1 chr17 42153069 42153069 1 + G A rs529935686 42153069 + 42153049 42153089 41 TCCATCAGCCTAGCCTTCAAGTGGTGTGAGCGGCCTGAGTG TCCATCAGCCTAGCCTTCAAATGGTGTGAGCGGCCTGAGTG Direct Loss 1 0.823661994501833 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42153069 chr17:42153069 synonymous SNV . 0 21 hm7G_associated_SNPs_5 0 0 1 0 1 G6PC3 chr17:42153048 3'AG 42153048 Downstream 22bp 2 chr17 48823124 48823124 1 + G A rs146274793 48823124 + 48823104 48823144 41 AGAACCTGATCGTGATGAGCGTCTAAAAAAGGAGAAGCAAG AGAACCTGATCGTGATGAGCATCTAAAAAAGGAGAAGCAAG Direct Loss 1 0.842168927842519 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48823124 chr17:48823124 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_6 0 0 1 0 1 LUC7L3 chr17:48823081 3'AG 48823081 Downstream 44bp 3 chr19 45397229 45397229 1 + G A rs1160983 45397229 + 45397209 45397249 41 TCTCCACAGACCCAGCAGTCGAAGTTTGTGAACTGGCAGGT TCTCCACAGACCCAGCAGTCAAAGTTTGTGAACTGGCAGGT Direct Loss 1 0.69111161360206 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control TOMM40 ENSG00000130204 CDS Human protein_coding chr19:45397229 chr19:45397229 synonymous SNV . 0 21 hm7G_associated_SNPs_8 0 0 1 0 2 TOMM40 chr19:45397218 3'AG 45397218 Downstream 12bp 4 chr19 45397229 45397229 1 + G A rs1160983 45397229 + 45397209 45397249 41 TCTCCACAGACCCAGCAGTCGAAGTTTGTGAACTGGCAGGT TCTCCACAGACCCAGCAGTCAAAGTTTGTGAACTGGCAGGT Direct Loss 1 0.69111161360206 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control TOMM40 ENSG00000130204 CDS Human protein_coding chr19:45397229 chr19:45397229 synonymous SNV . 0 21 hm7G_associated_SNPs_8 0 0 1 0 2 TOMM40 chr19:45397323 5'GT 45397323 Upstream 95bp 5 chr20 47841507 47841507 1 + G A rs368410954 47841507 + 47841487 47841527 41 CTCAAAGTAAAGGATCGGAAGAAGAAGAAGAAGAAAGGACA CTCAAAGTAAAGGATCGGAAAAAGAAGAAGAAGAAAGGACA Direct Loss 1 0.926134452590486 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47841507 chr20:47841507 synonymous SNV . 0 21 hm7G_associated_SNPs_9 0 0 1 0 2 DDX27 chr20:47841482 3'AG 47841482 Downstream 26bp 6 chr20 47841507 47841507 1 + G A rs368410954 47841507 + 47841487 47841527 41 CTCAAAGTAAAGGATCGGAAGAAGAAGAAGAAGAAAGGACA CTCAAAGTAAAGGATCGGAAAAAGAAGAAGAAGAAAGGACA Direct Loss 1 0.926134452590486 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DDX27 ENSG00000124228 CDS Human protein_coding chr20:47841507 chr20:47841507 synonymous SNV . 0 21 hm7G_associated_SNPs_9 0 0 1 0 2 DDX27 chr20:47841528 5'GT 47841528 Upstream 22bp 7 chrX 154004554 154004554 1 + G A rs3752356 154004554 + 154004534 154004574 41 AAGAAGAGTAAGAAGGACAAGAAGGCCAAAGCTGGTCTGGA AAGAAGAGTAAGAAGGACAAAAAGGCCAAAGCTGGTCTGGA Direct Loss 1 0.904957572528487 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment DKC1 ENSG00000130826 CDS Human protein_coding chrX:154004554 chrX:154004554 synonymous SNV . 0 21 hm7G_associated_SNPs_10 0 0 1 0 2 DKC1 chrX:154004462 3'AG 154004462 Downstream 93bp 8 chrX 154004554 154004554 1 + G A rs3752356 154004554 + 154004534 154004574 41 AAGAAGAGTAAGAAGGACAAGAAGGCCAAAGCTGGTCTGGA AAGAAGAGTAAGAAGGACAAAAAGGCCAAAGCTGGTCTGGA Direct Loss 1 0.904957572528487 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment DKC1 ENSG00000130826 CDS Human protein_coding chrX:154004554 chrX:154004554 synonymous SNV . 0 21 hm7G_associated_SNPs_10 0 0 1 0 2 DKC1 chrX:154004599 5'GT 154004599 Upstream 46bp 9 chr20 42089160 42089160 1 + G A BLCA 42089160 + 42089140 42089180 41 TTTTTCTCCTAATAGGTCTCGATCTAGAAGACGGTCACGAA TTTTTCTCCTAATAGGTCTCAATCTAGAAGACGGTCACGAA Direct Loss 1 0.905337018384895 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089160 chr20:42089160 nonsynonymous SNV 0.990 3 21 hm7G_associated_SNPs_11 0 0 1 0 2 SRSF6 chr20:42089155 3'AG 42089155 Downstream 6bp 10 chr20 42089160 42089160 1 + G A BLCA 42089160 + 42089140 42089180 41 TTTTTCTCCTAATAGGTCTCGATCTAGAAGACGGTCACGAA TTTTTCTCCTAATAGGTCTCAATCTAGAAGACGGTCACGAA Direct Loss 1 0.905337018384895 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089160 chr20:42089160 nonsynonymous SNV 0.990 3 21 hm7G_associated_SNPs_11 0 0 1 0 2 SRSF6 chr20:42089238 5'GT 42089238 Upstream 79bp 11 chr20 57484229 57484229 1 + G C BLCA 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAACATCGACGTGATCAAGCAGGC Direct Loss 1 0.746199363567965 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484229 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_12 0 0 1 0 2 GNAS chr20:57484217 3'AG 57484217 Downstream 13bp 12 chr20 57484229 57484229 1 + G C BLCA 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAACATCGACGTGATCAAGCAGGC Direct Loss 1 0.746199363567965 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484229 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_12 0 0 1 0 2 GNAS chr20:57484271 5'GT 57484271 Upstream 43bp 13 chr1 201843449 201843449 1 + G A BLCA 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACGAGCTCTCCAACATCATGGAGGCTAATGCCGCT Direct Loss 1 0.468708716308114 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843449 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_14 0 0 1 0 2 IPO9 chr1:201843378 3'AG 201843378 Downstream 72bp 14 chr1 201843449 201843449 1 + G A BLCA 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACGAGCTCTCCAACATCATGGAGGCTAATGCCGCT Direct Loss 1 0.468708716308114 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843449 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_14 0 0 1 0 2 IPO9 chr1:201843500 5'GT 201843500 Upstream 52bp 15 chr1 45242394 45242394 1 + G A BLCA 45242394 + 45242374 45242414 41 CGTGTGCGGGGAGGTAACAAGAAATACCGTGCCCTGAGGTT CGTGTGCGGGGAGGTAACAAAAAATACCGTGCCCTGAGGTT Direct Loss 1 0.881552510340011 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPS8 ENSG00000142937 CDS Human protein_coding chr1:45242394 chr1:45242394 synonymous SNV . 0 21 hm7G_associated_SNPs_15 0 0 1 0 1 RPS8 chr1:45242347 3'AG 45242347 Downstream 48bp 16 chr22 24129380 24129380 1 + G C BLCA 24129380 + 24129360 24129400 41 ATGATGATGGCGCTGAGCAAGACCTTCGGGCAGAAGCCCGT ATGATGATGGCGCTGAGCAACACCTTCGGGCAGAAGCCCGT Direct Loss 1 0.783657980231862 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCB1 ENSG00000099956 CDS Human protein_coding chr22:24129380 chr22:24129380 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_17 0 0 1 0 1 SMARCB1 chr22:24129449 5'GT 24129449 Upstream 70bp 17 chr7 30673444 30673444 1 + G C BLCA 30673444 + 30673424 30673464 41 ATCCTCTGTTTGAAGGGCAAGAGACTGGTAAAAAAGAGACA ATCCTCTGTTTGAAGGGCAACAGACTGGTAAAAAAGAGACA Direct Loss 1 0.861444554774406 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GARS ENSG00000106105 CDS Human protein_coding chr7:30673444 chr7:30673444 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_19 0 0 1 0 1 GARS chr7:30673351 3'AG 30673351 Downstream 94bp 18 chr19 39219705 39219705 1 + G A CESC 39219705 + 39219685 39219725 41 GCGGCCTTGTGACCTTCCAAGCCTTCATCGACTTCATGTCG GCGGCCTTGTGACCTTCCAAACCTTCATCGACTTCATGTCG Direct Loss 1 0.361777522102999 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219705 chr19:39219705 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_21 0 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 90bp 19 chrX 118604355 118604355 1 + G T CESC 118604355 + 118604335 118604375 41 GGAATGCTTCCGGATCCCAAGAACACTCACATCGTCATCAG GGAATGCTTCCGGATCCCAATAACACTCACATCGTCATCAG Direct Loss 1 0.819091057075739 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118604355 chrX:118604355 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_22 0 0 1 0 1 SLC25A5 chrX:118604336 3'AG 118604336 Downstream 20bp 20 chr19 5691566 5691566 1 + G A CESC 5691566 + 5691546 5691586 41 GGGACGCACATCCGCGCCAAGAGGAAGCGGGAGGAGCTGAG GGGACGCACATCCGCGCCAAAAGGAAGCGGGAGGAGCTGAG Direct Loss 1 0.951864395665143 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691566 chr19:5691566 synonymous SNV . 0 21 hm7G_associated_SNPs_23 0 0 1 0 1 RPL36 chr19:5691543 3'AG 5691543 Downstream 24bp 21 chr12 104337030 104337030 1 + G A COAD 104337030 + 104337010 104337050 41 TGAGAAAACTAAGGAGAGTCGTGAAGCAGTTGAGAAAGAAT TGAGAAAACTAAGGAGAGTCATGAAGCAGTTGAGAAAGAAT Direct Loss 1 0.761987964671535 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104337030 chr12:104337030 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_25 0 0 1 0 1 HSP90B1 chr12:104337097 5'GT 104337097 Upstream 68bp 22 chr11 57509654 57509654 1 + G C COAD 57509654 + 57509634 57509674 41 TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAG TCAAATTCCCTGAGCCTCAACAGGTGGTGGAAGAGTTGAAG Direct Loss 1 0.703612354599778 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SELENOH ENSG00000211450;ENSG00000254732 CDS Human protein_coding chr11:57509654 chr11:57509654 unknown 0.996 0 21 hm7G_associated_SNPs_26 0 0 1 0 2 SELENOH chr11:57509589 3'AG 57509589 Downstream 66bp 23 chr11 57509654 57509654 1 + G C COAD 57509654 + 57509634 57509674 41 TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAG TCAAATTCCCTGAGCCTCAACAGGTGGTGGAAGAGTTGAAG Direct Loss 1 0.703612354599778 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SELENOH ENSG00000211450;ENSG00000254732 CDS Human other chr11:57509654 chr11:57509654 unknown 0.996 0 21 hm7G_associated_SNPs_26 0 0 1 0 2 TMX2-CTNND1 chr11:57509719 5'GT 57509719 Upstream 66bp 24 chrX 153667407 153667407 1 + G A COAD 153667407 + 153667387 153667427 41 ACTCGCTACCTGGACTTCAAGGTGGTGGAGGGCAGCTTTGT ACTCGCTACCTGGACTTCAAAGTGGTGGAGGGCAGCTTTGT Direct Loss 1 0.944590900352136 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GDI1 ENSG00000203879 CDS Human protein_coding chrX:153667407 chrX:153667407 synonymous SNV . 0 21 hm7G_associated_SNPs_27 1 0 1 0 2 GDI1 chrX:153667352 3'AG 153667352 Downstream 56bp 25 chrX 153667407 153667407 1 + G A COAD 153667407 + 153667387 153667427 41 ACTCGCTACCTGGACTTCAAGGTGGTGGAGGGCAGCTTTGT ACTCGCTACCTGGACTTCAAAGTGGTGGAGGGCAGCTTTGT Direct Loss 1 0.944590900352136 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GDI1 ENSG00000203879 CDS Human protein_coding chrX:153667407 chrX:153667407 synonymous SNV . 0 21 hm7G_associated_SNPs_27 1 0 1 0 2 GDI1 chrX:153667486 5'GT 153667486 Upstream 80bp 26 chr3 40502923 40502923 1 + G A COAD 40502923 + 40502903 40502943 41 ACCAGAAGTATGTCCGACAAGCCTGGCAGAAGGCAGACATC ACCAGAAGTATGTCCGACAAACCTGGCAGAAGGCAGACATC Direct Loss 1 0.95291066500629 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL14 ENSG00000188846 CDS Human protein_coding chr3:40502923 chr3:40502923 nonsynonymous SNV 0.982 3 21 hm7G_associated_SNPs_28 0 0 1 0 1 RPL14 chr3:40502898 3'AG 40502898 Downstream 26bp 27 chr9 136217511 136217511 1 + G T COAD 136217511 + 136217491 136217531 41 GTCCCTTACTGCATTATCAAGGGAAAGGCAAGACTGGGACG GTCCCTTACTGCATTATCAATGGAAAGGCAAGACTGGGACG Direct Loss 1 0.912995929936907 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL7A ENSG00000148303 CDS Human protein_coding chr9:136217511 chr9:136217511 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_30 0 0 1 0 2 RPL7A chr9:136217452 3'AG 136217452 Downstream 60bp 28 chr9 136217511 136217511 1 + G T COAD 136217511 + 136217491 136217531 41 GTCCCTTACTGCATTATCAAGGGAAAGGCAAGACTGGGACG GTCCCTTACTGCATTATCAATGGAAAGGCAAGACTGGGACG Direct Loss 1 0.912995929936907 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL7A ENSG00000148303 CDS Human protein_coding chr9:136217511 chr9:136217511 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_30 0 0 1 0 2 RPL7A chr9:136217582 5'GT 136217582 Upstream 72bp 29 chr5 176733460 176733460 1 + G A ESCA 176733460 + 176733440 176733480 41 ACACTTGTTGAGACAGCCAAGGAAGCCAAGGAGAAGGCAAA ACACTTGTTGAGACAGCCAAAGAAGCCAAGGAGAAGGCAAA Direct Loss 1 0.959580220980205 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733460 chr5:176733460 synonymous SNV . 0 21 hm7G_associated_SNPs_31 0 0 1 0 2 PRELID1 chr5:176733423 3'AG 176733423 Downstream 38bp 30 chr5 176733460 176733460 1 + G A ESCA 176733460 + 176733440 176733480 41 ACACTTGTTGAGACAGCCAAGGAAGCCAAGGAGAAGGCAAA ACACTTGTTGAGACAGCCAAAGAAGCCAAGGAGAAGGCAAA Direct Loss 1 0.959580220980205 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733460 chr5:176733460 synonymous SNV . 0 21 hm7G_associated_SNPs_31 0 0 1 0 2 PRELID1 chr5:176733456 3'AG 176733456 Downstream 5bp 31 chr9 116038922 116038922 1 + G T ESCA 116038922 + 116038902 116038942 41 GGAAGAGAAGGAGAGGGAGCGTCTGGCCAAAGGAGAGTCTG GGAAGAGAAGGAGAGGGAGCTTCTGGCCAAAGGAGAGTCTG Direct Loss 1 0.817148836339342 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116038922 chr9:116038922 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_32 0 0 1 0 3 PRPF4 chr9:116038825 3'AG 116038825 Downstream 98bp 32 chr9 116038922 116038922 1 + G T ESCA 116038922 + 116038902 116038942 41 GGAAGAGAAGGAGAGGGAGCGTCTGGCCAAAGGAGAGTCTG GGAAGAGAAGGAGAGGGAGCTTCTGGCCAAAGGAGAGTCTG Direct Loss 1 0.817148836339342 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116038922 chr9:116038922 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_32 0 0 1 0 3 PRPF4 chr9:116038828 3'AG 116038828 Downstream 95bp 33 chr9 116038922 116038922 1 + G T ESCA 116038922 + 116038902 116038942 41 GGAAGAGAAGGAGAGGGAGCGTCTGGCCAAAGGAGAGTCTG GGAAGAGAAGGAGAGGGAGCTTCTGGCCAAAGGAGAGTCTG Direct Loss 1 0.817148836339342 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116038922 chr9:116038922 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_32 0 0 1 0 3 PRPF4 chr9:116039005 5'GT 116039005 Upstream 84bp 34 chr3 142772598 142772598 1 + G A GBM 142772598 + 142772578 142772618 41 GAATCTCGCTCCAAAGACAAGAAGGAAAAAGATGAGTGTAC GAATCTCGCTCCAAAGACAAAAAGGAAAAAGATGAGTGTAC Direct Loss 1 0.67027271848008 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment U2SURP ENSG00000163714 CDS Human protein_coding chr3:142772598 chr3:142772598 synonymous SNV . 0 21 hm7G_associated_SNPs_33 0 0 1 0 1 U2SURP chr3:142772518 3'AG 142772518 Downstream 81bp 35 chr1 112003559 112003559 1 + G A GBM 112003559 + 112003539 112003579 41 GAAAAGGAGACAATTGCCAAGTGCATTGCGGACCTAAAGCT GAAAAGGAGACAATTGCCAAATGCATTGCGGACCTAAAGCT Direct Loss 1 0.715729248838525 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ATP5F1 ENSG00000116459 CDS Human protein_coding chr1:112003559 chr1:112003559 synonymous SNV . 0 21 hm7G_associated_SNPs_34 0 0 1 1 1 ATP5F1 chr1:112003539 3'AG 112003539 Downstream 21bp 36 chr11 65827009 65827009 1 + G T HNSC 65827009 + 65826989 65827029 41 AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG AAGAAGCCAGAAGCCCCCAATCTGTCCAAGAAGAAGTTGCG Direct Loss 1 0.785187108120848 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827009 chr11:65827009 nonsynonymous SNV 0.980 4 21 hm7G_associated_SNPs_35 0 0 1 0 2 SF3B2 chr11:65826986 3'AG 65826986 Downstream 24bp 37 chr11 65827009 65827009 1 + G T HNSC 65827009 + 65826989 65827029 41 AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG AAGAAGCCAGAAGCCCCCAATCTGTCCAAGAAGAAGTTGCG Direct Loss 1 0.785187108120848 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827009 chr11:65827009 nonsynonymous SNV 0.980 4 21 hm7G_associated_SNPs_35 0 0 1 0 2 SF3B2 chr11:65827066 5'GT 65827066 Upstream 58bp 38 chr16 28994535 28994535 1 + G A LGG 28994535 + 28994515 28994555 41 CGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCC CGTGGTGATCCCTACCCGACACTCCACCGCCGAGGCCTTCC Direct Loss 1 0.770337987753295 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994535 chr16:28994535 nonsynonymous SNV 0.359 3 21 hm7G_associated_SNPs_37 0 0 0 0 2 SPNS1 chr16:28994513 3'AG 28994513 Downstream 23bp 39 chr16 28994535 28994535 1 + G A LGG 28994535 + 28994515 28994555 41 CGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCC CGTGGTGATCCCTACCCGACACTCCACCGCCGAGGCCTTCC Direct Loss 1 0.770337987753295 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994535 chr16:28994535 nonsynonymous SNV 0.359 3 21 hm7G_associated_SNPs_37 0 0 0 0 2 SPNS1 chr16:28994611 5'GT 28994611 Upstream 77bp 40 chr5 65473450 65473450 1 + G A LGG 65473450 + 65473430 65473470 41 AGTTCTAATGATAGAGATGGGAAGGAGAAGTTGGAGAAGAA AGTTCTAATGATAGAGATGGAAAGGAGAAGTTGGAGAAGAA Direct Loss 1 0.784088738834204 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SREK1 ENSG00000153914 CDS Human protein_coding chr5:65473450 chr5:65473450 synonymous SNV . 0 21 hm7G_associated_SNPs_38 0 0 1 0 1 SREK1 chr5:65473486 5'GT 65473486 Upstream 37bp 41 chr6 133138166 133138166 1 + G A LGG 133138166 + 133138146 133138186 41 TGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAGTT TGACAGAGAGGGGAAACCCCATAAAGTGGTTGGTTGCAGTT Direct Loss 1 0.877921004839634 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138166 chr6:133138166 nonsynonymous SNV 0.891 0 21 hm7G_associated_SNPs_39 0 0 1 0 2 RPS12 chr6:133138099 3'AG 133138099 Downstream 68bp 42 chr6 133138166 133138166 1 + G A LGG 133138166 + 133138146 133138186 41 TGACAGAGAGGGGAAACCCCGTAAAGTGGTTGGTTGCAGTT TGACAGAGAGGGGAAACCCCATAAAGTGGTTGGTTGCAGTT Direct Loss 1 0.877921004839634 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138166 chr6:133138166 nonsynonymous SNV 0.891 0 21 hm7G_associated_SNPs_39 0 0 1 0 2 RPS12 chr6:133138200 5'GT 133138200 Upstream 35bp 43 chr1 156107462 156107462 1 + G T LIHC 156107462 + 156107442 156107482 41 CAGGAAGTGGCCATGCGCAAGCTGGTGCGCTCAGTGACTGT CAGGAAGTGGCCATGCGCAATCTGGTGCGCTCAGTGACTGT Direct Loss 1 0.79382717531992 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156107462 chr1:156107462 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40 0 0 1 0 2 LMNA chr1:156107445 3'AG 156107445 Downstream 18bp 44 chr1 156107462 156107462 1 + G T LIHC 156107462 + 156107442 156107482 41 CAGGAAGTGGCCATGCGCAAGCTGGTGCGCTCAGTGACTGT CAGGAAGTGGCCATGCGCAATCTGGTGCGCTCAGTGACTGT Direct Loss 1 0.79382717531992 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156107462 chr1:156107462 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40 0 0 1 0 2 LMNA chr1:156107534 5'GT 156107534 Upstream 73bp 45 chr11 43465039 43465039 1 + G C LUAD 43465039 + 43465019 43465059 41 GGCGGCGTCTAGACTTACAAGGAATACGGGTGCTGAAGAAA GGCGGCGTCTAGACTTACAACGAATACGGGTGCTGAAGAAA Direct Loss 1 0.583975610855475 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465039 chr11:43465039 nonsynonymous SNV 0.967 4 21 hm7G_associated_SNPs_41 0 0 1 0 1 TTC17 chr11:43465134 5'GT 43465134 Upstream 96bp 46 chr4 56212671 56212671 1 + G A LUAD 56212671 + 56212651 56212691 41 ATCCGCTATGGGAAAACCAAGTGTGGGGAGCCGTCGCGCCC ATCCGCTATGGGAAAACCAAATGTGGGGAGCCGTCGCGCCC Direct Loss 1 0.762586684918612 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56212671 chr4:56212671 synonymous SNV . 0 21 hm7G_associated_SNPs_42 0 0 1 0 1 SRD5A3 chr4:56212724 5'GT 56212724 Upstream 54bp 47 chr1 156100417 156100417 1 + G A LUSC 156100417 + 156100397 156100437 41 CTCTTCTTTAGCAATACCAAGAAGGAGGGTGACCTGATAGC CTCTTCTTTAGCAATACCAAAAAGGAGGGTGACCTGATAGC Direct Loss 1 0.776040319195784 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment LMNA ENSG00000160789 CDS Human protein_coding chr1:156100417 chr1:156100417 synonymous SNV . 0 21 hm7G_associated_SNPs_44 0 0 1 0 1 LMNA chr1:156100408 3'AG 156100408 Downstream 10bp 48 chr7 149575803 149575803 1 + G A LUSC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTATTCGGGCCCCAGCTGAAGAA Direct Loss 1 0.76349083175711 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575803 synonymous SNV . 0 21 hm7G_associated_SNPs_45 0 0 1 0 3 ATP6V0E2 chr7:149575767 3'AG 149575767 Downstream 37bp 49 chr7 149575803 149575803 1 + G A LUSC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTATTCGGGCCCCAGCTGAAGAA Direct Loss 1 0.76349083175711 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575803 synonymous SNV . 0 21 hm7G_associated_SNPs_45 0 0 1 0 3 ATP6V0E2 chr7:149575835 5'GT 149575835 Upstream 33bp 50 chr7 149575803 149575803 1 + G A LUSC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTATTCGGGCCCCAGCTGAAGAA Direct Loss 1 0.76349083175711 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human antisense chr7:149575803 chr7:149575803 synonymous SNV . 0 21 hm7G_associated_SNPs_45 0 0 1 0 3 ATP6V0E2 chr7:149575879 5'GT 149575879 Upstream 77bp 51 chr2 220371039 220371039 1 + G T LUSC 220371039 + 220371019 220371059 41 CCGTGGGACGCTGGGCCCGCGTGGAGGGTACCCCCAGTGAC CCGTGGGACGCTGGGCCCGCTTGGAGGGTACCCCCAGTGAC Direct Loss 1 0.614808448152813 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371039 chr2:220371039 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_46 0 0 1 0 1 GMPPA chr2:220370976 3'AG 220370976 Downstream 64bp 52 chr19 5131093 5131093 1 + G A READ 5131093 + 5131073 5131113 41 TCCTCTTCCCACAGAGGACGGGAGGGGCAAGCTGCGGCCAA TCCTCTTCCCACAGAGGACGAGAGGGGCAAGCTGCGGCCAA Direct Loss 1 0.475440477524929 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5131093 chr19:5131093 nonsynonymous SNV 0.443 0 21 hm7G_associated_SNPs_47 0 0 1 0 1 KDM4B chr19:5131087 3'AG 5131087 Downstream 7bp 53 chr7 42976985 42976985 1 + G T SARC 42976985 + 42976965 42977005 41 ACATGTCCTTTGTGCCTACTGCTATGAAAAGGTGTGCAAGG ACATGTCCTTTGTGCCTACTTCTATGAAAAGGTGTGCAAGG Direct Loss 1 0.938936524256873 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MRPL32 ENSG00000106591 CDS Human protein_coding chr7:42976985 chr7:42976985 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_48 0 0 1 0 1 MRPL32 chr7:42976921 3'AG 42976921 Downstream 65bp 54 chr2 102459092 102459092 1 + G T SKCM 102459092 + 102459072 102459112 41 TGAAACTGAGTATGAGTACAGTGGGAGTGAGGAAGAAGAGG TGAAACTGAGTATGAGTACATTGGGAGTGAGGAAGAAGAGG Direct Loss 1 0.635354510992736 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102459092 chr2:102459092 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_50 0 0 1 0 2 MAP4K4 chr2:102459071 3'AG 102459071 Downstream 22bp 55 chr2 102459092 102459092 1 + G T SKCM 102459092 + 102459072 102459112 41 TGAAACTGAGTATGAGTACAGTGGGAGTGAGGAAGAAGAGG TGAAACTGAGTATGAGTACATTGGGAGTGAGGAAGAAGAGG Direct Loss 1 0.635354510992736 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102459092 chr2:102459092 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_50 0 0 1 0 2 MAP4K4 chr2:102459143 5'GT 102459143 Upstream 52bp 56 chr4 110743579 110743579 1 + G A SKCM 110743579 + 110743559 110743599 41 AGGTGAGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCC AGGTGAGAAAGGACCTCCAAAAGGTGGTGGCAGGGGAGGCC Direct Loss 1 0.907411812276559 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GAR1 ENSG00000109534 CDS Human protein_coding chr4:110743579 chr4:110743579 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_51 0 0 1 0 3 GAR1 chr4:110743503 3'AG 110743503 Downstream 77bp 57 chr4 110743579 110743579 1 + G A SKCM 110743579 + 110743559 110743599 41 AGGTGAGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCC AGGTGAGAAAGGACCTCCAAAAGGTGGTGGCAGGGGAGGCC Direct Loss 1 0.907411812276559 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GAR1 ENSG00000109534 CDS Human protein_coding chr4:110743579 chr4:110743579 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_51 0 0 1 0 3 GAR1 chr4:110743620 5'GT 110743620 Upstream 42bp 58 chr4 110743579 110743579 1 + G A SKCM 110743579 + 110743559 110743599 41 AGGTGAGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCC AGGTGAGAAAGGACCTCCAAAAGGTGGTGGCAGGGGAGGCC Direct Loss 1 0.907411812276559 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GAR1 ENSG00000109534 CDS Human protein_coding chr4:110743579 chr4:110743579 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_51 0 0 1 0 3 GAR1 chr4:110743644 5'GT 110743644 Upstream 66bp 59 chr11 34119268 34119268 1 + G A SKCM 34119268 + 34119248 34119288 41 GGATATCAGCAGAATTTCAAGCGAGGCTCTGGGCAGAGTGG GGATATCAGCAGAATTTCAAACGAGGCTCTGGGCAGAGTGG Direct Loss 1 0.741095010170605 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPRIN1 ENSG00000135387 CDS Human protein_coding chr11:34119268 chr11:34119268 synonymous SNV 1.000 0 21 hm7G_associated_SNPs_52 0 0 1 0 2 CAPRIN1 chr11:34119245 3'AG 34119245 Downstream 24bp 60 chr11 34119268 34119268 1 + G A SKCM 34119268 + 34119248 34119288 41 GGATATCAGCAGAATTTCAAGCGAGGCTCTGGGCAGAGTGG GGATATCAGCAGAATTTCAAACGAGGCTCTGGGCAGAGTGG Direct Loss 1 0.741095010170605 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPRIN1 ENSG00000135387 CDS Human protein_coding chr11:34119268 chr11:34119268 synonymous SNV 1.000 0 21 hm7G_associated_SNPs_52 0 0 1 0 2 CAPRIN1 chr11:34119308 5'GT 34119308 Upstream 41bp 61 chr7 2416644 2416644 1 + G A SKCM 2416644 + 2416624 2416664 41 CTCCTGCAGAAGAACAACAAGGACCGCTTCTGCCAGCTGCT CTCCTGCAGAAGAACAACAAAGACCGCTTCTGCCAGCTGCT Direct Loss 1 0.774004621568995 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2416644 chr7:2416644 synonymous SNV . 0 21 hm7G_associated_SNPs_54 0 0 1 0 2 EIF3B chr7:2416585 3'AG 2416585 Downstream 60bp 62 chr7 2416644 2416644 1 + G A SKCM 2416644 + 2416624 2416664 41 CTCCTGCAGAAGAACAACAAGGACCGCTTCTGCCAGCTGCT CTCCTGCAGAAGAACAACAAAGACCGCTTCTGCCAGCTGCT Direct Loss 1 0.774004621568995 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2416644 chr7:2416644 synonymous SNV . 0 21 hm7G_associated_SNPs_54 0 0 1 0 2 EIF3B chr7:2416710 5'GT 2416710 Upstream 67bp 63 chr17 78280117 78280117 1 + G A STAD 78280117 + 78280097 78280137 41 CATAGACGAGCCTCTCTTCCGGTCCTGGTTTAGTCTGCTAC CATAGACGAGCCTCTCTTCCAGTCCTGGTTTAGTCTGCTAC Direct Loss 1 0.198855173784912 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78280117 chr17:78280117 nonsynonymous SNV 0.474 2 21 hm7G_associated_SNPs_55 0 0 1 0 1 RNF213 chr17:78280052 3'AG 78280052 Downstream 66bp 64 chr3 50129595 50129595 1 + G A STAD 50129595 + 50129575 50129615 41 CAAAAGATCTAGTGATGATCGGAGGGGTGATAGATATGATG CAAAAGATCTAGTGATGATCAGAGGGGTGATAGATATGATG Direct Loss 1 0.65162775548696 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50129595 chr3:50129595 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_57 0 0 1 0 1 RBM5 chr3:50129641 5'GT 50129641 Upstream 47bp 65 chr6 30547740 30547740 1 + G T THCA 30547740 + 30547720 30547760 41 GAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAGGAAGA GAACAGCAGCCTGCACTCAATGGCAAAAAGGGAAAGGAAGA Direct Loss 1 0.598440181520788 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547740 chr6:30547740 nonsynonymous SNV 0.907 1 21 hm7G_associated_SNPs_58 0 0 1 0 2 ABCF1 chr6:30547708 3'AG 30547708 Downstream 33bp 66 chr6 30547740 30547740 1 + G T THCA 30547740 + 30547720 30547760 41 GAACAGCAGCCTGCACTCAAGGGCAAAAAGGGAAAGGAAGA GAACAGCAGCCTGCACTCAATGGCAAAAAGGGAAAGGAAGA Direct Loss 1 0.598440181520788 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30547740 chr6:30547740 nonsynonymous SNV 0.907 1 21 hm7G_associated_SNPs_58 0 0 1 0 2 ABCF1 chr6:30547782 5'GT 30547782 Upstream 43bp 67 chrX 16778399 16778399 1 + G T UCEC 16778399 + 16778379 16778419 41 AACTGCAGCAGGAACTTCAAGAATATGAAGTGGTGACAGAA AACTGCAGCAGGAACTTCAATAATATGAAGTGGTGACAGAA Direct Loss 1 0.916329650858254 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16778399 chrX:16778399 stopgain 1.000 1 21 hm7G_associated_SNPs_59 0 0 1 0 1 SYAP1 chrX:16778355 3'AG 16778355 Downstream 45bp 68 chr11 810306 810306 1 + G T UCEC 810306 + 810286 810326 41 CCCAGCGCCAAGGACATCAAGAAGATCTTGGACAGCGTGGG CCCAGCGCCAAGGACATCAATAAGATCTTGGACAGCGTGGG Direct Loss 1 0.898225693614698 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810306 chr11:810306 nonsynonymous SNV 0.967 4 21 hm7G_associated_SNPs_60 0 0 1 0 2 RPLP2 chr11:810234 3'AG 810234 Downstream 73bp 69 chr11 810306 810306 1 + G T UCEC 810306 + 810286 810326 41 CCCAGCGCCAAGGACATCAAGAAGATCTTGGACAGCGTGGG CCCAGCGCCAAGGACATCAATAAGATCTTGGACAGCGTGGG Direct Loss 1 0.898225693614698 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810306 chr11:810306 nonsynonymous SNV 0.967 4 21 hm7G_associated_SNPs_60 0 0 1 0 2 RPLP2 chr11:810357 5'GT 810357 Upstream 52bp 70 chr5 176860608 176860608 1 + G A UCEC 176860608 + 176860588 176860628 41 CTAGAGAAAAAGCGGATCAAGAAGCGGAAAGGGGAGGCCAT CTAGAGAAAAAGCGGATCAAAAAGCGGAAAGGGGAGGCCAT Direct Loss 1 0.950762196545424 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GRK6 ENSG00000198055 CDS Human protein_coding chr5:176860608 chr5:176860608 synonymous SNV . 0 21 hm7G_associated_SNPs_62 0 0 1 0 2 GRK6 chr5:176860537 3'AG 176860537 Downstream 72bp 71 chr5 176860608 176860608 1 + G A UCEC 176860608 + 176860588 176860628 41 CTAGAGAAAAAGCGGATCAAGAAGCGGAAAGGGGAGGCCAT CTAGAGAAAAAGCGGATCAAAAAGCGGAAAGGGGAGGCCAT Direct Loss 1 0.950762196545424 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GRK6 ENSG00000198055 CDS Human protein_coding chr5:176860608 chr5:176860608 synonymous SNV . 0 21 hm7G_associated_SNPs_62 0 0 1 0 2 GRK6 chr5:176860677 5'GT 176860677 Upstream 70bp 72 chr19 59059690 59059690 1 + G A UCEC 59059690 + 59059670 59059710 41 CAGCTGCACCGGGCCCTCAAGATGATTGTGGATCCCGTGGA CAGCTGCACCGGGCCCTCAAAATGATTGTGGATCCCGTGGA Direct Loss 1 0.822399537538611 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059690 chr19:59059690 synonymous SNV . 0 21 hm7G_associated_SNPs_63 0 0 1 0 1 TRIM28 chr19:59059775 5'GT 59059775 Upstream 86bp 73 chr1 93300349 93300349 1 + G A UCEC 93300349 + 93300329 93300369 41 ACTATAGATTGCTTATGCCCGTATAGAGGGGGATATGATAG ACTATAGATTGCTTATGCCCATATAGAGGGGGATATGATAG Direct Loss 1 0.91831716485491 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPL5 ENSG00000122406 CDS Human protein_coding chr1:93300349 chr1:93300349 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_64 0 0 1 0 1 RPL5 chr1:93300336 3'AG 93300336 Downstream 14bp 74 chr11 67379610 67379610 1 + G T UCEC 67379610 + 67379590 67379630 41 GGTGTGGACTGGATGAACAAGGTGATGGCACGTTTCGTGAG GGTGTGGACTGGATGAACAATGTGATGGCACGTTTCGTGAG Direct Loss 1 0.871881646369018 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67379610 chr11:67379610 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_65 0 0 1 0 1 NDUFV1 chr11:67379591 3'AG 67379591 Downstream 20bp 75 chr10 99212225 99212225 1 + G A UCEC 99212225 + 99212205 99212245 41 AAGAAGTGCATTTACCCCAAGCCAGCCCGAACACACCACTG AAGAAGTGCATTTACCCCAAACCAGCCCGAACACACCACTG Direct Loss 1 0.836632345251489 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99212225 chr10:99212225 synonymous SNV . 0 21 hm7G_associated_SNPs_67 0 0 1 0 2 ZDHHC16 chr10:99212172 3'AG 99212172 Downstream 54bp 76 chr10 99212225 99212225 1 + G A UCEC 99212225 + 99212205 99212245 41 AAGAAGTGCATTTACCCCAAGCCAGCCCGAACACACCACTG AAGAAGTGCATTTACCCCAAACCAGCCCGAACACACCACTG Direct Loss 1 0.836632345251489 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99212225 chr10:99212225 synonymous SNV . 0 21 hm7G_associated_SNPs_67 0 0 1 0 2 ZDHHC16 chr10:99212260 5'GT 99212260 Upstream 36bp 77 chr5 233631 233631 1 + G A UCEC 233631 + 233611 233651 41 TCTCATTACGGAAGGATGTCGTGGAGAGGGAGGCATTCTCA TCTCATTACGGAAGGATGTCATGGAGAGGGAGGCATTCTCA Direct Loss 1 0.822466129258169 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SDHA ENSG00000073578 CDS Human protein_coding chr5:233631 chr5:233631 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_69 0 0 0 0 1 SDHA chr5:233592 3'AG 233592 Downstream 40bp 78 chr12 58176927 58176927 1 + G T UCEC 58176927 + 58176907 58176947 41 GCGTCAGTCGCCCCAGCCAAGGCACACATTTTATGCTGGGC GCGTCAGTCGCCCCAGCCAATGCACACATTTTATGCTGGGC Direct Loss 1 0.705127706116134 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment TSFM ENSG00000123297;ENSG00000257921 CDS Human other chr12:58176927 chr12:58176927 nonsynonymous SNV 0.008 0 21 hm7G_associated_SNPs_70 0 0 1 0 1 TSFM chr12:58176893 3'AG 58176893 Downstream 35bp 79 chr19 50000495 50000495 1 + G A UCEC 50000495 + 50000475 50000515 41 CCGACCATCTTTCAAAACAAGAAGAGGGTCCTGCTGGGAGA CCGACCATCTTTCAAAACAAAAAGAGGGTCCTGCTGGGAGA Direct Loss 1 0.93661100449156 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPS11 ENSG00000142534 CDS Human protein_coding chr19:50000495 chr19:50000495 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_71 0 0 1 0 2 RPS11 chr19:50000451 3'AG 50000451 Downstream 45bp 80 chr19 50000495 50000495 1 + G A UCEC 50000495 + 50000475 50000515 41 CCGACCATCTTTCAAAACAAGAAGAGGGTCCTGCTGGGAGA CCGACCATCTTTCAAAACAAAAAGAGGGTCCTGCTGGGAGA Direct Loss 1 0.93661100449156 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPS11 ENSG00000142534 CDS Human protein_coding chr19:50000495 chr19:50000495 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_71 0 0 1 0 2 RPS11 chr19:50000582 5'GT 50000582 Upstream 88bp 81 chr17 49238592 49238592 1 + G A UCEC 49238592 + 49238572 49238612 41 ACCAACCCTGCAGACTCCAAGCCTGGGACCATCCGTGGAGA ACCAACCCTGCAGACTCCAAACCTGGGACCATCCGTGGAGA Direct Loss 1 0.84508266865456 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NME1;NME1-NME2 ENSG00000011052;ENSG00000239672;ENSG00000243678 CDS Human other chr17:49238592 chr17:49238592 synonymous SNV . 0 21 hm7G_associated_SNPs_72 0 0 1 0 2 NME1;NME1-NME2 chr17:49238521 3'AG 49238521 Downstream 72bp 82 chr17 49238592 49238592 1 + G A UCEC 49238592 + 49238572 49238612 41 ACCAACCCTGCAGACTCCAAGCCTGGGACCATCCGTGGAGA ACCAACCCTGCAGACTCCAAACCTGGGACCATCCGTGGAGA Direct Loss 1 0.84508266865456 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NME1;NME1-NME2 ENSG00000011052;ENSG00000239672;ENSG00000243678 CDS Human other chr17:49238592 chr17:49238592 synonymous SNV . 0 21 hm7G_associated_SNPs_72 0 0 1 0 2 NME1;NME1-NME2 chr17:49238633 5'GT 49238633 Upstream 42bp 83 chr6 133138113 133138113 1 + G T UCEC 133138113 + 133138093 133138133 41 CAATAGGTTGATGACAACAAGAAACTAGGAGAATGGGTAGG CAATAGGTTGATGACAACAATAAACTAGGAGAATGGGTAGG Direct Loss 1 0.93237071190779 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138113 chr6:133138113 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_73 0 0 1 1 2 RPS12 chr6:133138099 3'AG 133138099 Downstream 15bp 84 chr6 133138113 133138113 1 + G T UCEC 133138113 + 133138093 133138133 41 CAATAGGTTGATGACAACAAGAAACTAGGAGAATGGGTAGG CAATAGGTTGATGACAACAATAAACTAGGAGAATGGGTAGG Direct Loss 1 0.93237071190779 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPS12 ENSG00000112306 CDS Human protein_coding chr6:133138113 chr6:133138113 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_73 0 0 1 1 2 RPS12 chr6:133138200 5'GT 133138200 Upstream 88bp 85 chrX 118377118 118377118 1 + G A UCEC 118377118 + 118377098 118377138 41 TCTTCTCTACCTCCAGTCAAGTATCATCACGTGGGCAAACT TCTTCTCTACCTCCAGTCAAATATCATCACGTGGGCAAACT Direct Loss 1 0.896104876948872 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PGRMC1 ENSG00000101856 CDS Human protein_coding chrX:118377118 chrX:118377118 synonymous SNV . 0 21 hm7G_associated_SNPs_75 0 0 1 0 1 PGRMC1 chrX:118377114 3'AG 118377114 Downstream 5bp 86 chr1 223943216 223943216 1 + G T UCEC 223943216 + 223943196 223943236 41 AACCCTCAGTACCTGATCAAGCTGGAGGAGGAGGATGAGGA AACCCTCAGTACCTGATCAATCTGGAGGAGGAGGATGAGGA Direct Loss 1 0.889239944048919 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943216 chr1:223943216 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_76 0 0 1 0 1 CAPN2 chr1:223943182 3'AG 223943182 Downstream 35bp 87 chr7 100275850 100275850 1 + G C UCEC 100275850 + 100275830 100275870 41 GCCTGTGATGCCTCTATCAAGCTGTGGGACGTGCGGGATTC GCCTGTGATGCCTCTATCAACCTGTGGGACGTGCGGGATTC Direct Loss 1 0.870745731872375 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNB2 ENSG00000172354 CDS Human protein_coding chr7:100275850 chr7:100275850 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_77 0 0 1 0 1 GNB2 chr7:100275922 5'GT 100275922 Upstream 73bp 88 chr12 6979454 6979454 1 + G T UCEC 6979454 + 6979434 6979474 41 GTGACTGGGGCAACCTGCAAGGAGCTGGCCAGCCAGCCTGA GTGACTGGGGCAACCTGCAATGAGCTGGCCAGCCAGCCTGA Direct Loss 1 0.896713737851446 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TPI1 ENSG00000111669 CDS Human protein_coding chr12:6979454 chr12:6979454 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_78 0 0 1 0 1 TPI1 chr12:6979429 3'AG 6979429 Downstream 26bp 89 chr1 151237343 151237343 1 + G T UCEC 151237343 + 151237323 151237363 41 CGACAAGGCAAGAATCACAAGATGCGCATCATTGCCTTTGT CGACAAGGCAAGAATCACAATATGCGCATCATTGCCTTTGT Direct Loss 1 0.726418759904856 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237343 chr1:151237343 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_80 0 0 1 0 2 PSMD4 chr1:151237308 3'AG 151237308 Downstream 36bp 90 chr1 151237343 151237343 1 + G T UCEC 151237343 + 151237323 151237363 41 CGACAAGGCAAGAATCACAAGATGCGCATCATTGCCTTTGT CGACAAGGCAAGAATCACAATATGCGCATCATTGCCTTTGT Direct Loss 1 0.726418759904856 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237343 chr1:151237343 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_80 0 0 1 0 2 PSMD4 chr1:151237394 5'GT 151237394 Upstream 52bp 91 chr7 75689729 75689729 1 + G T UCEC 75689729 + 75689709 75689749 41 ATCACAGCAGAAGTTTTCAAGAAGCATGGAGTGTACAACCC ATCACAGCAGAAGTTTTCAATAAGCATGGAGTGTACAACCC Direct Loss 1 0.825910862369502 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment MDH2 ENSG00000146701 CDS Human protein_coding chr7:75689729 chr7:75689729 nonsynonymous SNV 0.987 5 21 hm7G_associated_SNPs_82 0 0 1 0 2 MDH2 chr7:75689691 3'AG 75689691 Downstream 39bp 92 chr7 75689729 75689729 1 + G T UCEC 75689729 + 75689709 75689749 41 ATCACAGCAGAAGTTTTCAAGAAGCATGGAGTGTACAACCC ATCACAGCAGAAGTTTTCAATAAGCATGGAGTGTACAACCC Direct Loss 1 0.825910862369502 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment MDH2 ENSG00000146701 CDS Human protein_coding chr7:75689729 chr7:75689729 nonsynonymous SNV 0.987 5 21 hm7G_associated_SNPs_82 0 0 1 0 2 MDH2 chr7:75689816 5'GT 75689816 Upstream 88bp 93 chr1 36766495 36766495 1 + G A UCEC 36766495 + 36766475 36766515 41 CTCTTTTCACAGGAAGCATCGGAGAGCAAGAGACAGGTCCA CTCTTTTCACAGGAAGCATCAGAGAGCAAGAGACAGGTCCA Direct Loss 1 0.900949238099297 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36766495 chr1:36766495 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_84 0 0 1 0 1 THRAP3 chr1:36766487 3'AG 36766487 Downstream 9bp 94 chr2 47698147 47698147 1 + G T UCEC 47698147 + 47698127 47698167 41 AGTATACCAAAAATAAAACAGAATATGAAGAAGCCCAGGAT AGTATACCAAAAATAAAACATAATATGAAGAAGCCCAGGAT Direct Loss 1 0.868964949145456 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MSH2 ENSG00000095002 CDS Human protein_coding chr2:47698147 chr2:47698147 stopgain 0.974 1 21 hm7G_associated_SNPs_85 0 0 1 1 2 MSH2 chr2:47698104 3'AG 47698104 Downstream 44bp 95 chr2 47698147 47698147 1 + G T UCEC 47698147 + 47698127 47698167 41 AGTATACCAAAAATAAAACAGAATATGAAGAAGCCCAGGAT AGTATACCAAAAATAAAACATAATATGAAGAAGCCCAGGAT Direct Loss 1 0.868964949145456 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MSH2 ENSG00000095002 CDS Human protein_coding chr2:47698147 chr2:47698147 stopgain 0.974 1 21 hm7G_associated_SNPs_85 0 0 1 1 2 MSH2 chr2:47698201 5'GT 47698201 Upstream 55bp 96 chrX 70517735 70517735 1 + G T UCEC 70517735 + 70517715 70517755 41 AAGAGATGCGGCGGCAGCAAGAAGAAATGATGCGGCGACAG AAGAGATGCGGCGGCAGCAATAAGAAATGATGCGGCGACAG Direct Loss 1 0.940760711615003 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment NONO ENSG00000147140 CDS Human protein_coding chrX:70517735 chrX:70517735 stopgain 0.952 1 21 hm7G_associated_SNPs_86 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 50bp 97 chrX 70517735 70517735 1 + G T UCEC 70517735 + 70517715 70517755 41 AAGAGATGCGGCGGCAGCAAGAAGAAATGATGCGGCGACAG AAGAGATGCGGCGGCAGCAATAAGAAATGATGCGGCGACAG Direct Loss 1 0.940760711615003 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment NONO ENSG00000147140 CDS Human protein_coding chrX:70517735 chrX:70517735 stopgain 0.952 1 21 hm7G_associated_SNPs_86 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 54bp 98 chr12 53345348 53345348 1 + G T UCEC 53345348 + 53345328 53345368 41 AAATCTCAGGACCTCGCCAAGATCATGGCAGACATCCGGGC AAATCTCAGGACCTCGCCAATATCATGGCAGACATCCGGGC Direct Loss 1 0.878876131608642 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53345348 chr12:53345348 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_88 0 0 1 0 2 KRT18 chr12:53345265 3'AG 53345265 Downstream 84bp 99 chr12 53345348 53345348 1 + G T UCEC 53345348 + 53345328 53345368 41 AAATCTCAGGACCTCGCCAAGATCATGGCAGACATCCGGGC AAATCTCAGGACCTCGCCAATATCATGGCAGACATCCGGGC Direct Loss 1 0.878876131608642 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control KRT18 ENSG00000111057 CDS Human protein_coding chr12:53345348 chr12:53345348 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_88 0 0 1 0 2 KRT18 chr12:53345429 5'GT 53345429 Upstream 82bp 100 chr20 39741481 39741481 1 + G T UCEC 39741481 + 39741461 39741501 41 CTGAAAAAATGTGTGGACAAGATCCGGAACCAGTATCGAGA CTGAAAAAATGTGTGGACAATATCCGGAACCAGTATCGAGA Direct Loss 1 0.824702710167751 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TOP1 ENSG00000198900 CDS Human protein_coding chr20:39741481 chr20:39741481 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_89 0 0 1 0 1 TOP1 chr20:39741565 5'GT 39741565 Upstream 85bp 101 chr4 54324870 54324870 1 + G A UCEC 54324870 + 54324850 54324890 41 TGCAGAAAGAGGTTATGAGCGTCACAGAGCAAGTCGAGAAA TGCAGAAAGAGGTTATGAGCATCACAGAGCAAGTCGAGAAA Direct Loss 1 0.507707960495244 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54324870 chr4:54324870 nonsynonymous SNV 0.982 3 21 hm7G_associated_SNPs_90 0 0 1 0 2 FIP1L1 chr4:54324820 3'AG 54324820 Downstream 51bp 102 chr4 54324870 54324870 1 + G A UCEC 54324870 + 54324850 54324890 41 TGCAGAAAGAGGTTATGAGCGTCACAGAGCAAGTCGAGAAA TGCAGAAAGAGGTTATGAGCATCACAGAGCAAGTCGAGAAA Direct Loss 1 0.507707960495244 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54324870 chr4:54324870 nonsynonymous SNV 0.982 3 21 hm7G_associated_SNPs_90 0 0 1 0 2 FIP1L1 chr4:54324957 5'GT 54324957 Upstream 88bp 103 chr10 7844286 7844286 1 + G T UCEC 7844286 + 7844266 7844306 41 ACGTGCTGCAAAATTACCAAGAATACAATCTGGCCAACATC ACGTGCTGCAAAATTACCAATAATACAATCTGGCCAACATC Direct Loss 1 0.829915528467881 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7844286 chr10:7844286 stopgain 0.994 1 21 hm7G_associated_SNPs_91 0 0 1 0 1 ATP5C1 chr10:7844233 3'AG 7844233 Downstream 54bp 104 chr19 50338272 50338272 1 + G A UCEC 50338272 + 50338252 50338292 41 GTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCGTGCT GTGCACTTCCCCCACACGGCACCCTGTGAGGTGCGCGTGCT Direct Loss 1 0.675644220521691 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338272 chr19:50338272 synonymous SNV . 0 21 hm7G_associated_SNPs_92 0 0 0 0 1 MED25 chr19:50338243 3'AG 50338243 Downstream 30bp 105 chr1 1407372 1407372 1 + T C rs188574574 1407371 + 1407351 1407391 41 CGAGGGCGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGC CGAGGGCGGCGGGGACCGCGGCTTGGGAGACCGGCCGGCGC < 41bp 1 0.632897875513399 NA NA experiment 0.734204248973201 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1407371 chr1:1407372 synonymous SNV . 0 22 hm7G_associated_SNPs_93 0 0 1 0 1 ATAD3B chr1:1407469 5'GT 1407469 Upstream 98bp 106 chr1 7831352 7831352 1 + C A rs72853889 7831351 + 7831331 7831371 41 TGACGTCTTTGCCCCGCGCCGCGCCGTCCCACCCATCTCCC TGACGTCTTTGCCCCGCGCCGAGCCGTCCCACCCATCTCCC < 41bp 1 0.420674439418529 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control VAMP3 ENSG00000049245 UTR5 Human protein_coding chr1:7831351 chr1:7831352 . . 0 22 hm7G_associated_SNPs_94 0 0 0 0 1 VAMP3 chr1:7831445 5'GT 7831445 Upstream 94bp 107 chr1 76253229 76253229 1 + T A rs3737573 76253211 + 76253191 76253231 41 CAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTT CAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACATT < 41bp 1 0.62344759920545 NA NA experiment 0.753104801589101 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253211 chr1:76253229 synonymous SNV . 0 39 hm7G_associated_SNPs_99 0 0 1 0 2 RABGGTB chr1:76253182 3'AG 76253182 Downstream 48bp 108 chr1 76253229 76253229 1 + T A rs3737573 76253211 + 76253191 76253231 41 CAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTT CAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACATT < 41bp 1 0.62344759920545 NA NA experiment 0.753104801589101 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253211 chr1:76253229 synonymous SNV . 0 39 hm7G_associated_SNPs_99 0 0 1 0 2 RABGGTB chr1:76253289 5'GT 76253289 Upstream 61bp 109 chr1 113162482 113162482 1 + G T rs113823236 113162466 + 113162446 113162486 41 GCTGGGCCAGAACAGCCCAAGATGGCCGACTTCGATGATCG GCTGGGCCAGAACAGCCCAAGATGGCCGACTTCGATTATCG < 41bp 1 0.777539888810145 NA NA experiment 0.444920222379709 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113162466 chr1:113162482 nonsynonymous SNV 1.000 4 37 hm7G_associated_SNPs_101 0 0 1 0 1 CAPZA1 chr1:113162505 5'GT 113162505 Upstream 24bp 110 chr1 113217311 113217311 1 + G C rs3748655 113217314 + 113217294 113217334 41 AAGAGTTAATGCGAAGAGGGGGAGGGGATAGGACGAAGAAA AAGAGTTAATGCGAAGACGGGGAGGGGATAGGACGAAGAAA < 41bp 1 0.751518132156098 NA NA experiment 0.496963735687804 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MOV10 ENSG00000155363 UTR5 Human protein_coding chr1:113217314 chr1:113217311 . . 0 18 hm7G_associated_SNPs_104 0 0 1 0 1 MOV10 chr1:113217351 5'GT 113217351 Upstream 41bp 111 chr1 113217311 113217311 1 + G C rs3748655 113217315 + 113217295 113217335 41 AGAGTTAATGCGAAGAGGGGGAGGGGATAGGACGAAGAAAC AGAGTTAATGCGAAGACGGGGAGGGGATAGGACGAAGAAAC < 41bp 1 0.40107845576581 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MOV10 ENSG00000155363 UTR5 Human protein_coding chr1:113217315 chr1:113217311 . . 0 17 hm7G_associated_SNPs_105 0 0 1 0 1 MOV10 chr1:113217351 5'GT 113217351 Upstream 41bp 112 chr1 120284469 120284469 1 + G A rs144484007 120284463 + 120284443 120284483 41 CTCCTGAAAGAGGCTTCCAAGCAGGCGGATGTGAACTTGGT CTCCTGAAAGAGGCTTCCAAGCAGGCAGATGTGAACTTGGT < 41bp 1 0.769417529484304 NA NA experiment 0.461164941031392 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PHGDH ENSG00000092621 CDS Human protein_coding chr1:120284463 chr1:120284469 synonymous SNV . 0 27 hm7G_associated_SNPs_106 1 0 1 0 2 PHGDH chr1:120284390 3'AG 120284390 Downstream 80bp 113 chr1 120284469 120284469 1 + G A rs144484007 120284463 + 120284443 120284483 41 CTCCTGAAAGAGGCTTCCAAGCAGGCGGATGTGAACTTGGT CTCCTGAAAGAGGCTTCCAAGCAGGCAGATGTGAACTTGGT < 41bp 1 0.769417529484304 NA NA experiment 0.461164941031392 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PHGDH ENSG00000092621 CDS Human protein_coding chr1:120284463 chr1:120284469 synonymous SNV . 0 27 hm7G_associated_SNPs_106 1 0 1 0 2 PHGDH chr1:120284520 5'GT 120284520 Upstream 52bp 114 chr1 156100408 156100408 1 + C T rs41313880 156100417 + 156100397 156100437 41 CTCTTCTTTAGCAATACCAAGAAGGAGGGTGACCTGATAGC CTCTTCTTTAGTAATACCAAGAAGGAGGGTGACCTGATAGC < 41bp 1 0.7823510302599 NA NA experiment 0.435297939480199 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment LMNA ENSG00000160789 CDS Human protein_coding chr1:156100417 chr1:156100408 synonymous SNV . 0 12 hm7G_associated_SNPs_109 6 0 1 0 1 LMNA chr1:156100408 3'AG 156100408 Downstream 1bp 115 chr1 207495781 207495781 1 + G A rs28371588 207495787 + 207495767 207495807 41 AGCTTTGGAAGGCCGTACAAGTTTTCCCGAGGATACTGTAA AGCTTTGGAAGGCCATACAAGTTTTCCCGAGGATACTGTAA < 41bp 1 0.690544294517313 NA NA experiment 0.618911410965375 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207495787 chr1:207495781 nonsynonymous SNV 0.000 0 15 hm7G_associated_SNPs_113 0 0 1 0 1 CD55 chr1:207495727 3'AG 207495727 Downstream 55bp 116 chr1 228270410 228270410 1 + G C rs187898639 228270415 + 228270395 228270435 41 ACGTGGCCGCCGTCAGAGCCGCCATCTTGTGGGAGCAAAAC ACGTGGCCGCCGTCACAGCCGCCATCTTGTGGGAGCAAAAC < 41bp 1 0.68614770110889 NA NA experiment 0.627704597782219 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ARF1 ENSG00000143761 UTR5 Human protein_coding chr1:228270415 chr1:228270410 . . 0 16 hm7G_associated_SNPs_114 0 0 1 0 1 ARF1 chr1:228270466 5'GT 228270466 Upstream 57bp 117 chr1 235530758 235530758 1 + T A rs114193373 235530755 + 235530735 235530775 41 ACTTCCGGCCAGAGCCTCAAGCTTCGCTGCTGGGCAGTTGG ACTTCCGGCCAGAGCCTCAAGCTACGCTGCTGGGCAGTTGG < 41bp 1 0.701255803824738 NA NA experiment 0.597488392350524 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment TBCE ENSG00000116957 UTR5 Human protein_coding chr1:235530755 chr1:235530758 . . 0 24 hm7G_associated_SNPs_116 1 0 1 0 1 TBCE chr1:235530819 5'GT 235530819 Upstream 62bp 118 chr2 216176791 216176791 1 + C G rs117281478 216176782 + 216176762 216176802 41 GCCCCCTCGCTTCCTGAGCCGCCACATCCCGGCAGCCCTCC GCCCCCTCGCTTCCTGAGCCGCCACATCCGGGCAGCCCTCC < 41bp 1 0.497721977702375 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATIC ENSG00000138363 UTR5 Human protein_coding chr2:216176782 chr2:216176791 . . 0 30 hm7G_associated_SNPs_127 0 0 0 0 1 ATIC chr2:216176884 5'GT 216176884 Upstream 94bp 119 chr2 219135254 219135254 1 + T C rs552943410 219135244 + 219135224 219135264 41 CGGGGAGCGCGGTGAAGCGGGGGTGGGATCTGAACATGGCG CGGGGAGCGCGGTGAAGCGGGGGTGGGATCCGAACATGGCG < 41bp 1 0.732261597285644 NA NA experiment 0.535476805428712 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PNKD ENSG00000127838 UTR5 Human protein_coding chr2:219135244 chr2:219135254 . . 0 31 hm7G_associated_SNPs_128 0 0 1 0 1 PNKD chr2:219135325 5'GT 219135325 Upstream 72bp 120 chr2 220371028 220371028 1 + G A rs568570865 220371039 + 220371019 220371059 41 CCGTGGGACGCTGGGCCCGCGTGGAGGGTACCCCCAGTGAC CCGTGGGACACTGGGCCCGCGTGGAGGGTACCCCCAGTGAC < 41bp 1 0.62837415782323 NA NA experiment 0.74325168435354 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371039 chr2:220371028 nonsynonymous SNV 0.999 2 10 hm7G_associated_SNPs_129 0 0 1 0 1 GMPPA chr2:220370976 3'AG 220370976 Downstream 53bp 121 chr2 220371035 220371035 1 + C G rs1046474 220371039 + 220371019 220371059 41 CCGTGGGACGCTGGGCCCGCGTGGAGGGTACCCCCAGTGAC CCGTGGGACGCTGGGCGCGCGTGGAGGGTACCCCCAGTGAC < 41bp 1 0.659403461578861 NA NA experiment 0.681193076842277 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371039 chr2:220371035 synonymous SNV . 0 17 hm7G_associated_SNPs_130 1 0 0 0 1 GMPPA chr2:220370976 3'AG 220370976 Downstream 60bp 122 chr3 23631323 23631323 1 + G A rs376236414 23631307 + 23631287 23631327 41 ATGGCCAGACAGTGGACCAAGCGGTACGCCACATAGGGGCC ATGGCCAGACAGTGGACCAAGCGGTACGCCACATAGAGGCC < 41bp 1 0.536445092425149 NA NA experiment 0.927109815149703 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MIR548AC ENSG00000182247 UTR3 Human protein_coding chr3:23631307 chr3:23631323 . . 0 37 hm7G_associated_SNPs_133 0 0 1 0 1 UBE2E2 chr3:23631225 3'AG 23631225 Downstream 99bp 123 chr3 23960854 23960854 1 + G A rs373573769 23960840 + 23960820 23960860 41 CCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAGATG CCCAGTGGATCACCAAACCAGTCCACAAGCACAGAGAGATG < 41bp 1 0.649298214769179 NA NA experiment 0.701403570461641 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960840 chr3:23960854 synonymous SNV . 0 35 hm7G_associated_SNPs_135 0 0 1 0 1 RPL15 chr3:23960841 3'AG 23960841 Downstream 14bp 124 chr3 49711776 49711776 1 + G T rs375714729 49711791 + 49711771 49711811 41 CCCCGGAAGCCTCACTTCCGGGCGCGAGCACGCCCCGCCTC CCCCGTAAGCCTCACTTCCGGGCGCGAGCACGCCCCGCCTC < 41bp 1 0.705038841599482 NA NA experiment 0.589922316801036 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control APEH ENSG00000164062 UTR5 Human protein_coding chr3:49711791 chr3:49711776 . . 0 6 hm7G_associated_SNPs_138 0 0 0 0 1 APEH chr3:49711846 5'GT 49711846 Upstream 71bp 125 chr3 50295858 50295858 1 + G A rs374572856 50295852 + 50295832 50295872 41 GAGGAAGATGGGGGCAAGAAGATCACGCTCCCCGCCTGTTC GAGGAAGATGGGGGCAAGAAGATCACACTCCCCGCCTGTTC < 41bp 1 0.485883971071874 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GNAI2 ENSG00000114353 UTR3 Human protein_coding chr3:50295852 chr3:50295858 . . 0 27 hm7G_associated_SNPs_139 0 0 1 0 1 GNAI2 chr3:50295800 3'AG 50295800 Downstream 59bp 126 chr3 142720443 142720443 1 + C G rs111340020 142720444 + 142720424 142720464 41 GACTCGCCCGTGCTGCTGCCGCCGCCGAAGGAGGGGCAAAG GACTCGCCCGTGCTGCTGCGGCCGCCGAAGGAGGGGCAAAG < 41bp 1 0.583187907419788 NA NA experiment 0.833624185160423 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control U2SURP ENSG00000163714 UTR5 Human protein_coding chr3:142720444 chr3:142720443 . . 0 20 hm7G_associated_SNPs_144 0 0 1 0 1 U2SURP chr3:142720515 5'GT 142720515 Upstream 73bp 127 chr3 183894823 183894823 1 + G A rs2231214 183894814 + 183894794 183894834 41 TTATTCATCTATAATCACAAGGGGGAGGTGCTCATCTCCCG TTATTCATCTATAATCACAAGGGGGAGGTACTCATCTCCCG < 41bp 1 0.736958807301053 NA NA experiment 0.526082385397895 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183894814 chr3:183894823 synonymous SNV . 0 30 hm7G_associated_SNPs_145 0 0 1 0 1 AP2M1 chr3:183894855 5'GT 183894855 Upstream 33bp 128 chr3 197682650 197682650 1 + C T rs116874993 197682637 + 197682617 197682657 41 GCAGATGCTGTACCCCTCAAGGATTTAAACTAACGAAAAAT GCAGATGCTGTACCCCTCAAGGATTTAAACTAATGAAAAAT < 41bp 1 0.689498649807054 NA NA experiment 0.621002700385892 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL35A ENSG00000182899 UTR3 Human protein_coding chr3:197682637 chr3:197682650 . . 0 34 hm7G_associated_SNPs_146 2 0 1 0 1 RPL35A chr3:197682621 3'AG 197682621 Downstream 30bp 129 chr5 176074643 176074643 1 + G A rs74793226 176074628 + 176074608 176074648 41 CCGCTCACCATGCCCGGCAAGCACCAGCATTTCCAGGAACC CCGCTCACCATGCCCGGCAAGCACCAGCATTTCCAAGAACC < 41bp 1 0.789492489453516 NA NA experiment 0.421015021092969 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176074628 chr5:176074643 synonymous SNV . 0 36 hm7G_associated_SNPs_151 0 0 1 0 1 TSPAN17 chr5:176074703 5'GT 176074703 Upstream 61bp 130 chr6 30545879 30545879 1 + A G rs113473909 30545885 + 30545865 30545905 41 CGAGATACCCGAAAAGGCAGGCGGAAGAAGGATGTGGATGA CGAGATACCCGAAAGGGCAGGCGGAAGAAGGATGTGGATGA < 41bp 1 0.486332839724676 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545885 chr6:30545879 synonymous SNV . 0 15 hm7G_associated_SNPs_156 0 0 1 0 2 ABCF1 chr6:30545850 3'AG 30545850 Downstream 30bp 131 chr6 30545879 30545879 1 + A G rs113473909 30545885 + 30545865 30545905 41 CGAGATACCCGAAAAGGCAGGCGGAAGAAGGATGTGGATGA CGAGATACCCGAAAGGGCAGGCGGAAGAAGGATGTGGATGA < 41bp 1 0.486332839724676 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545885 chr6:30545879 synonymous SNV . 0 15 hm7G_associated_SNPs_156 0 0 1 0 2 ABCF1 chr6:30545853 3'AG 30545853 Downstream 27bp 132 chr6 31637706 31637706 1 + C G rs370990220 31637691 + 31637671 31637711 41 AACTTCAAGAGCCCAGTCAAGACGATTCGCTGATTCCCTCC AACTTCAAGAGCCCAGTCAAGACGATTCGCTGATTGCCTCC < 41bp 1 0.320613481002915 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CSNK2B ENSG00000204435 UTR3 Human protein_coding chr6:31637691 chr6:31637706 . . 0 36 hm7G_associated_SNPs_157 0 0 1 1 1 CSNK2B chr6:31637613 3'AG 31637613 Downstream 94bp 133 chr6 33168667 33168667 1 + G A rs9469380 33168684 + 33168664 33168704 41 GGCGGGACTGCCACGTCCAAGCAAACCGGGAAAGGAGAGGA GGCAGGACTGCCACGTCCAAGCAAACCGGGAAAGGAGAGGA < 41bp 1 0.577430754623336 NA NA experiment 0.845138490753327 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33168684 chr6:33168667 synonymous SNV . 0 4 hm7G_associated_SNPs_161 0 0 1 0 1 SLC39A7 chr6:33168715 5'GT 33168715 Upstream 49bp 134 chr6 33168689 33168689 1 + C A rs370287977 33168684 + 33168664 33168704 41 GGCGGGACTGCCACGTCCAAGCAAACCGGGAAAGGAGAGGA GGCGGGACTGCCACGTCCAAGCAAAACGGGAAAGGAGAGGA < 41bp 1 0.607421969626552 NA NA experiment 0.785156060746897 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33168684 chr6:33168689 nonsynonymous SNV 0.998 0 26 hm7G_associated_SNPs_162 0 0 1 0 1 SLC39A7 chr6:33168715 5'GT 33168715 Upstream 27bp 135 chr6 43445328 43445328 1 + G A rs541458011 43445332 + 43445312 43445352 41 CCCGGCCTGCCCCGCGGCAAGATGGCGGCCTGAACGCAGCT CCCGGCCTGCCCCGCGACAAGATGGCGGCCTGAACGCAGCT < 41bp 1 0.453901129855981 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment TJAP1 ENSG00000137221 UTR5 Human protein_coding chr6:43445332 chr6:43445328 . . 0 17 hm7G_associated_SNPs_166 0 0 1 0 1 TJAP1 chr6:43445366 5'GT 43445366 Upstream 39bp 136 chr7 89976025 89976025 1 + C T rs17621789 89976031 + 89976011 89976051 41 GGCTTGTGCCGCTTCCGCAAGAAGGTTTCCTGGCCTGTTGC GGCTTGTGCCGCTTTCGCAAGAAGGTTTCCTGGCCTGTTGC < 41bp 1 0.692237035239102 NA NA experiment 0.615525929521796 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GTPBP10 ENSG00000105793 UTR5 Human protein_coding chr7:89976031 chr7:89976025 . . 0 15 hm7G_associated_SNPs_172 0 0 1 0 1 GTPBP10 chr7:89976088 5'GT 89976088 Upstream 64bp 137 chr7 89976051 89976051 1 + C G rs11563905 89976031 + 89976011 89976051 41 GGCTTGTGCCGCTTCCGCAAGAAGGTTTCCTGGCCTGTTGC GGCTTGTGCCGCTTCCGCAAGAAGGTTTCCTGGCCTGTTGG < 41bp 1 0.704798026310876 NA NA experiment 0.590403947378248 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GTPBP10 ENSG00000105793 UTR5 Human protein_coding chr7:89976031 chr7:89976051 . . 0 41 hm7G_associated_SNPs_173 0 0 1 0 1 GTPBP10 chr7:89976088 5'GT 89976088 Upstream 38bp 138 chr7 127341244 127341244 1 + T G rs144408630 127341254 + 127341234 127341274 41 TTTCAGAATGTGAAGAACAAGCAAAGGCAGCCAAGAAAGGG TTTCAGAATGGGAAGAACAAGCAAAGGCAGCCAAGAAAGGG < 41bp 1 0.686862637931492 NA NA experiment 0.626274724137015 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127341254 chr7:127341244 nonsynonymous SNV 1.000 2 11 hm7G_associated_SNPs_175 0 0 1 0 1 SND1 chr7:127341217 3'AG 127341217 Downstream 28bp 139 chr7 127341282 127341282 1 + G A rs148794287 127341268 + 127341248 127341288 41 GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAGTGAGGG GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAATGAGGG < 41bp 1 0.700016197565103 NA NA experiment 0.599967604869795 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127341268 chr7:127341282 nonsynonymous SNV 1.000 1 35 hm7G_associated_SNPs_176 0 0 1 0 2 SND1 chr7:127341217 3'AG 127341217 Downstream 66bp 140 chr7 127341282 127341282 1 + G A rs148794287 127341268 + 127341248 127341288 41 GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAGTGAGGG GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAATGAGGG < 41bp 1 0.700016197565103 NA NA experiment 0.599967604869795 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127341268 chr7:127341282 nonsynonymous SNV 1.000 1 35 hm7G_associated_SNPs_176 0 0 1 0 2 SND1 chr7:127341377 5'GT 127341377 Upstream 96bp 141 chr7 127721507 127721507 1 + T A rs322825 127721492 + 127721472 127721512 41 GAGCGATCTGCTAGCTACAAGCCCGTGTTTGTGACTGAGAT GAGCGATCTGCTAGCTACAAGCCCGTGTTTGTGACAGAGAT < 41bp 1 0.375765598010006 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127721492 chr7:127721507 synonymous SNV . 0 36 hm7G_associated_SNPs_177 0 0 1 0 2 SND1 chr7:127721412 3'AG 127721412 Downstream 96bp 142 chr7 127721507 127721507 1 + T A rs322825 127721492 + 127721472 127721512 41 GAGCGATCTGCTAGCTACAAGCCCGTGTTTGTGACTGAGAT GAGCGATCTGCTAGCTACAAGCCCGTGTTTGTGACAGAGAT < 41bp 1 0.375765598010006 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127721492 chr7:127721507 synonymous SNV . 0 36 hm7G_associated_SNPs_177 0 0 1 0 2 SND1 chr7:127721553 5'GT 127721553 Upstream 47bp 143 chr7 134618092 134618092 1 + A G rs578105555 134618072 + 134618052 134618092 41 AGGGATGCTGAAGAAAACAAGAAAGAAGACAAGGAAAAGGA AGGGATGCTGAAGAAAACAAGAAAGAAGACAAGGAAAAGGG < 41bp 1 0.765168276895302 NA NA experiment 0.469663446209397 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control CALD1 ENSG00000122786 CDS Human protein_coding chr7:134618072 chr7:134618092 nonsynonymous SNV 0.695 0 41 hm7G_associated_SNPs_179 0 0 1 0 1 CALD1 chr7:134618141 5'GT 134618141 Upstream 50bp 144 chr9 139305140 139305140 1 + C A rs149055087 139305120 + 139305100 139305140 41 GAAGCGGGGCGGAGACGCAAGATGGCGGCTGTGGTGCTGGC GAAGCGGGGCGGAGACGCAAGATGGCGGCTGTGGTGCTGGA < 41bp 1 0.593987670649718 NA NA experiment 0.812024658700564 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PMPCA ENSG00000165688 CDS Human protein_coding chr9:139305120 chr9:139305140 nonsynonymous SNV 0.004 1 41 hm7G_associated_SNPs_195 0 0 1 0 1 PMPCA chr9:139305191 5'GT 139305191 Upstream 52bp 145 chr9 139733481 139733481 1 + C A rs191514627 139733476 + 139733456 139733496 41 CAGGCCCCGTCCCCAGTCAAGACATCACTCTTTCGAGTGAG CAGGCCCCGTCCCCAGTCAAGACATAACTCTTTCGAGTGAG < 41bp 1 0.144485965071403 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABL6 ENSG00000196642 CDS Human protein_coding chr9:139733476 chr9:139733481 synonymous SNV . 0 26 hm7G_associated_SNPs_198 0 0 1 0 1 RABL6 chr9:139733573 5'GT 139733573 Upstream 93bp 146 chr9 139733490 139733490 1 + G A rs180688035 139733476 + 139733456 139733496 41 CAGGCCCCGTCCCCAGTCAAGACATCACTCTTTCGAGTGAG CAGGCCCCGTCCCCAGTCAAGACATCACTCTTTCAAGTGAG < 41bp 1 0.116144663547898 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABL6 ENSG00000196642 CDS Human protein_coding chr9:139733476 chr9:139733490 synonymous SNV . 0 35 hm7G_associated_SNPs_199 0 0 1 0 1 RABL6 chr9:139733573 5'GT 139733573 Upstream 84bp 147 chr9 139888279 139888279 1 + C T rs563750403 139888271 + 139888251 139888291 41 GACCTGAAGGTGCAGCACAAGCGTGGCCCCGCGGGGAGTCC GACCTGAAGGTGCAGCACAAGCGTGGCCTCGCGGGGAGTCC < 41bp 1 0.761461600817107 NA NA experiment 0.477076798365786 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment C9orf142 ENSG00000148362 UTR3 Human protein_coding chr9:139888271 chr9:139888279 . . 0 29 hm7G_associated_SNPs_200 0 0 1 0 1 C9orf142 chr9:139888218 3'AG 139888218 Downstream 62bp 148 chr9 139888280 139888280 1 + C T rs150079464 139888271 + 139888251 139888291 41 GACCTGAAGGTGCAGCACAAGCGTGGCCCCGCGGGGAGTCC GACCTGAAGGTGCAGCACAAGCGTGGCCCTGCGGGGAGTCC < 41bp 1 0.761193689684855 NA NA experiment 0.477612620630291 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment C9orf142 ENSG00000148362 UTR3 Human protein_coding chr9:139888271 chr9:139888280 . . 0 30 hm7G_associated_SNPs_201 0 0 1 0 1 C9orf142 chr9:139888218 3'AG 139888218 Downstream 63bp 149 chr10 46233438 46233438 1 + A G rs546907249 46233452 + 46233432 46233472 41 GTGTATATGATGAAGAAGTGGAGGAGCCAGTACTCAAGGCT GTGTATGTGATGAAGAAGTGGAGGAGCCAGTACTCAAGGCT < 41bp 1 0.41846543352574 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control WASHC2C ENSG00000172661 CDS Human protein_coding chr10:46233452 chr10:46233438 nonsynonymous SNV 0.369 4 7 hm7G_associated_SNPs_203 0 0 0 0 1 WASHC2C chr10:46233493 5'GT 46233493 Upstream 56bp 150 chr11 57509674 57509674 1 + G A rs190189307 57509654 + 57509634 57509674 41 TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAG TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAA < 41bp 1 0.717838467080405 NA NA experiment 0.564323065839189 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SELENOH ENSG00000211450;ENSG00000254732 CDS Human protein_coding chr11:57509654 chr11:57509674 unknown . 0 41 hm7G_associated_SNPs_211 0 0 1 0 2 SELENOH chr11:57509589 3'AG 57509589 Downstream 86bp 151 chr11 57509674 57509674 1 + G A rs190189307 57509654 + 57509634 57509674 41 TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAG TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAA < 41bp 1 0.717838467080405 NA NA experiment 0.564323065839189 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SELENOH ENSG00000211450;ENSG00000254732 CDS Human other chr11:57509654 chr11:57509674 unknown . 0 41 hm7G_associated_SNPs_211 0 0 1 0 2 TMX2-CTNND1 chr11:57509719 5'GT 57509719 Upstream 46bp 152 chr11 64974102 64974102 1 + G A rs529524929 64974095 + 64974075 64974115 41 TCCACCTTCGAGCCCAACAAGGAGGGCGACTTCGTGCTGCG TCCACCTTCGAGCCCAACAAGGAGGGCAACTTCGTGCTGCG < 41bp 1 0.73202325608137 NA NA experiment 0.53595348783726 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64974095 chr11:64974102 nonsynonymous SNV 0.986 3 28 hm7G_associated_SNPs_215 0 0 1 0 1 CAPN1 chr11:64974145 5'GT 64974145 Upstream 44bp 153 chr11 67375885 67375885 1 + T C rs374675316 67375878 + 67375858 67375898 41 TCTCCCTAGACAGCACCCAAGAAAACCTCATTTGGCTCGCT TCTCCCTAGACAGCACCCAAGAAAACCCCATTTGGCTCGCT < 41bp 1 0.653587764393464 NA NA experiment 0.692824471213073 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67375878 chr11:67375885 nonsynonymous SNV 0.998 0 28 hm7G_associated_SNPs_220 0 0 1 0 2 NDUFV1 chr11:67375867 3'AG 67375867 Downstream 19bp 154 chr11 67375885 67375885 1 + T C rs374675316 67375878 + 67375858 67375898 41 TCTCCCTAGACAGCACCCAAGAAAACCTCATTTGGCTCGCT TCTCCCTAGACAGCACCCAAGAAAACCCCATTTGGCTCGCT < 41bp 1 0.653587764393464 NA NA experiment 0.692824471213073 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67375878 chr11:67375885 nonsynonymous SNV 0.998 0 28 hm7G_associated_SNPs_220 0 0 1 0 2 NDUFV1 chr11:67375949 5'GT 67375949 Upstream 65bp 155 chr11 85339638 85339638 1 + C T rs577525231 85339634 + 85339614 85339654 41 GGGTCCCCGCCCACCGGCAAGTCACATGAGCCACCAAAATG GGGTCCCCGCCCACCGGCAAGTCATATGAGCCACCAAAATG < 41bp 1 0.377390634857552 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TMEM126B ENSG00000171204 UTR5 Human protein_coding chr11:85339634 chr11:85339638 . . 0 25 hm7G_associated_SNPs_221 0 0 1 0 1 TMEM126B chr11:85339732 5'GT 85339732 Upstream 95bp 156 chr12 7080186 7080186 1 + G A rs782495453 7080197 + 7080177 7080217 41 CGACTAGGGGCAGGAAACAAGATCGGAGGCCGTAGTTTATT CGACTAGGGACAGGAAACAAGATCGGAGGCCGTAGTTTATT < 41bp 1 0.794159129262507 NA NA experiment 0.411681741474987 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080197 chr12:7080186 nonsynonymous SNV 0.904 0 10 hm7G_associated_SNPs_226 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 68bp 157 chr12 7080187 7080187 1 + C G rs11064480 7080197 + 7080177 7080217 41 CGACTAGGGGCAGGAAACAAGATCGGAGGCCGTAGTTTATT CGACTAGGGGGAGGAAACAAGATCGGAGGCCGTAGTTTATT < 41bp 1 0.796497715879497 NA NA experiment 0.407004568241006 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080197 chr12:7080187 nonsynonymous SNV 0.934 0 11 hm7G_associated_SNPs_227 1 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 67bp 158 chr12 53689331 53689331 1 + C T rs111794761 53689341 + 53689321 53689361 41 ACTTCCTCTTCGTTAAGTCGGCCTTCCCAACATGGCGCAGT ACTTCCTCTTTGTTAAGTCGGCCTTCCCAACATGGCGCAGT < 41bp 1 0.434881798685426 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PFDN5 ENSG00000123349 UTR5 Human protein_coding chr12:53689341 chr12:53689331 . . 0 11 hm7G_associated_SNPs_230 0 0 1 0 1 PFDN5 chr12:53689423 5'GT 53689423 Upstream 93bp 159 chr12 57626018 57626018 1 + C G rs11557166 57626024 + 57626004 57626044 41 GGCTACATGTCTGACGTCAAGCGGATATCAGCCACGTCCAT GGCTACATGTCTGAGGTCAAGCGGATATCAGCCACGTCCAT < 41bp 1 0.728543645527474 NA NA experiment 0.542912708945052 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626024 chr12:57626018 nonsynonymous SNV 0.991 1 15 hm7G_associated_SNPs_231 0 0 1 0 2 SHMT2 chr12:57625994 3'AG 57625994 Downstream 25bp 160 chr12 57626018 57626018 1 + C G rs11557166 57626024 + 57626004 57626044 41 GGCTACATGTCTGACGTCAAGCGGATATCAGCCACGTCCAT GGCTACATGTCTGAGGTCAAGCGGATATCAGCCACGTCCAT < 41bp 1 0.728543645527474 NA NA experiment 0.542912708945052 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626024 chr12:57626018 nonsynonymous SNV 0.991 1 15 hm7G_associated_SNPs_231 0 0 1 0 2 SHMT2 chr12:57626075 5'GT 57626075 Upstream 58bp 161 chr12 69993684 69993684 1 + A G rs559620948 69993702 + 69993682 69993722 41 GTATAACAGAAAGTTTTCAAGTGAAGCGACAGGTTCTTCTG GTGTAACAGAAAGTTTTCAAGTGAAGCGACAGGTTCTTCTG < 41bp 1 0.74409070843983 NA NA experiment 0.511818583120339 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CCT2 ENSG00000166226 CDS Human protein_coding chr12:69993702 chr12:69993684 nonsynonymous SNV 0.989 1 3 hm7G_associated_SNPs_232 0 0 1 0 1 CCT2 chr12:69993643 3'AG 69993643 Downstream 42bp 162 chr12 110784091 110784091 1 + C T rs149024535 110784098 + 110784078 110784118 41 CTCATGGATGAGACGCTCAAGTTTGTGGCCCGCAACTACCT CTCATGGATGAGATGCTCAAGTTTGTGGCCCGCAACTACCT < 41bp 1 0.552023967122665 NA NA experiment 0.89595206575467 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110784098 chr12:110784091 nonsynonymous SNV 0.994 2 14 hm7G_associated_SNPs_233 1 0 1 0 1 ATP2A2 chr12:110784126 5'GT 110784126 Upstream 36bp 163 chr12 120884291 120884291 1 + C T rs17431446 120884273 + 120884253 120884293 41 GGGCGCACTGCGGGGGCCAAGGAAGGAAGAAATGTGGTCGC GGGCGCACTGCGGGGGCCAAGGAAGGAAGAAATGTGGTTGC < 41bp 1 0.620691342568104 NA NA experiment 0.758617314863792 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GATC ENSG00000257218 CDS Human protein_coding chr12:120884273 chr12:120884291 nonsynonymous SNV 0.121 1 39 hm7G_associated_SNPs_235 0 0 1 0 1 GATC chr12:120884364 5'GT 120884364 Upstream 74bp 164 chr13 28009031 28009031 1 + G A rs7323 28009047 + 28009027 28009067 41 GGATGTATGTCGCTGTCCAAGAGAAGGCTGTGGAAGAACCT GGATATATGTCGCTGTCCAAGAGAAGGCTGTGGAAGAACCT < 41bp 1 0.793445278117711 NA NA experiment 0.413109443764577 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GTF3A ENSG00000122034 CDS Human protein_coding chr13:28009047 chr13:28009031 nonsynonymous SNV 0.433 1 5 hm7G_associated_SNPs_237 0 1 1 0 1 GTF3A chr13:28008942 3'AG 28008942 Downstream 90bp 165 chr14 67827097 67827097 1 + G A rs533445951 67827108 + 67827088 67827128 41 GGCCGGTGAGGGGGAAGCAAGTCTGGTCTCTGTGATTGAAG GGCCGGTGAAGGGGAAGCAAGTCTGGTCTCTGTGATTGAAG < 41bp 1 0.633707259852177 NA NA experiment 0.732585480295646 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment EIF2S1 ENSG00000134001 UTR5 Human protein_coding chr14:67827108 chr14:67827097 . . 0 10 hm7G_associated_SNPs_239 0 0 1 0 1 EIF2S1 chr14:67827173 5'GT 67827173 Upstream 77bp 166 chr14 67827112 67827112 1 + G C rs187449539 67827108 + 67827088 67827128 41 GGCCGGTGAGGGGGAAGCAAGTCTGGTCTCTGTGATTGAAG GGCCGGTGAGGGGGAAGCAAGTCTCGTCTCTGTGATTGAAG < 41bp 1 0.611319852523206 NA NA experiment 0.777360294953588 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment EIF2S1 ENSG00000134001 UTR5 Human protein_coding chr14:67827108 chr14:67827112 . . 0 25 hm7G_associated_SNPs_240 0 0 1 0 1 EIF2S1 chr14:67827173 5'GT 67827173 Upstream 62bp 167 chr14 100706172 100706172 1 + C T rs541775580 100706167 + 100706147 100706187 41 GGGCCGGCGCGGCGGGCGGCGGCGGCGCCGACCCGGGCAAC GGGCCGGCGCGGCGGGCGGCGGCGGTGCCGACCCGGGCAAC < 41bp 1 0.708592226695629 NA NA experiment 0.582815546608742 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control YY1 ENSG00000100811 CDS Human protein_coding chr14:100706167 chr14:100706172 synonymous SNV . 0 26 hm7G_associated_SNPs_241 0 0 1 0 1 YY1 chr14:100706260 5'GT 100706260 Upstream 89bp 168 chr14 100706172 100706172 1 + C T rs541775580 100706168 + 100706148 100706188 41 GGCCGGCGCGGCGGGCGGCGGCGGCGCCGACCCGGGCAACA GGCCGGCGCGGCGGGCGGCGGCGGTGCCGACCCGGGCAACA < 41bp 1 0.709327191675493 NA NA experiment 0.581345616649014 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control YY1 ENSG00000100811 CDS Human protein_coding chr14:100706168 chr14:100706172 synonymous SNV . 0 25 hm7G_associated_SNPs_242 0 0 1 0 1 YY1 chr14:100706260 5'GT 100706260 Upstream 89bp 169 chr14 100706186 100706186 1 + A G rs371252181 100706167 + 100706147 100706187 41 GGGCCGGCGCGGCGGGCGGCGGCGGCGCCGACCCGGGCAAC GGGCCGGCGCGGCGGGCGGCGGCGGCGCCGACCCGGGCAGC < 41bp 1 0.739346432028451 NA NA experiment 0.521307135943099 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control YY1 ENSG00000100811 CDS Human protein_coding chr14:100706167 chr14:100706186 nonsynonymous SNV 0.984 0 40 hm7G_associated_SNPs_243 0 0 1 0 1 YY1 chr14:100706260 5'GT 100706260 Upstream 75bp 170 chr14 100706186 100706186 1 + A G rs371252181 100706168 + 100706148 100706188 41 GGCCGGCGCGGCGGGCGGCGGCGGCGCCGACCCGGGCAACA GGCCGGCGCGGCGGGCGGCGGCGGCGCCGACCCGGGCAGCA < 41bp 1 0.757809249142146 NA NA experiment 0.484381501715709 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control YY1 ENSG00000100811 CDS Human protein_coding chr14:100706168 chr14:100706186 nonsynonymous SNV 0.984 0 39 hm7G_associated_SNPs_244 0 0 1 0 1 YY1 chr14:100706260 5'GT 100706260 Upstream 75bp 171 chr14 105169682 105169682 1 + C T rs150714865 105169684 + 105169664 105169704 41 TGTCATGAACGAGCTCTCCGGCAGCGACAACGTGCCCTACG TGTCATGAACGAGCTCTCTGGCAGCGACAACGTGCCCTACG < 41bp 1 0.27326721456812 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105169684 chr14:105169682 synonymous SNV . 0 19 hm7G_associated_SNPs_245 0 0 0 0 1 INF2 chr14:105169632 3'AG 105169632 Downstream 51bp 172 chr15 89858542 89858542 1 + C T rs34557339 89858560 + 89858540 89858580 41 AGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGA AGTACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGA < 41bp 1 0.717282496701845 NA NA experiment 0.56543500659631 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89858560 chr15:89858542 synonymous SNV . 0 3 hm7G_associated_SNPs_250 1 0 1 0 2 FANCI chr15:89858513 3'AG 89858513 Downstream 30bp 173 chr15 89858542 89858542 1 + C T rs34557339 89858560 + 89858540 89858580 41 AGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGA AGTACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGA < 41bp 1 0.717282496701845 NA NA experiment 0.56543500659631 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89858560 chr15:89858542 synonymous SNV . 0 3 hm7G_associated_SNPs_250 1 0 1 0 2 FANCI chr15:89858620 5'GT 89858620 Upstream 79bp 174 chr15 89858561 89858561 1 + A G rs114549781 89858560 + 89858540 89858580 41 AGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGA AGCACCTCACGAGACTTCAAGGTCAAAGGAAACATCCTAGA < 41bp 1 0.745883013095783 NA NA experiment 0.508233973808435 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89858560 chr15:89858561 nonsynonymous SNV 1.000 5 22 hm7G_associated_SNPs_251 0 0 1 0 2 FANCI chr15:89858513 3'AG 89858513 Downstream 49bp 175 chr15 89858561 89858561 1 + A G rs114549781 89858560 + 89858540 89858580 41 AGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGA AGCACCTCACGAGACTTCAAGGTCAAAGGAAACATCCTAGA < 41bp 1 0.745883013095783 NA NA experiment 0.508233973808435 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89858560 chr15:89858561 nonsynonymous SNV 1.000 5 22 hm7G_associated_SNPs_251 0 0 1 0 2 FANCI chr15:89858620 5'GT 89858620 Upstream 60bp 176 chr16 2213902 2213902 1 + C G rs374884281 2213898 + 2213878 2213918 41 CCACAGGAGGTGCTTCCCAAGGACCGTAGATGCCTCTCTAG CCACAGGAGGTGCTTCCCAAGGACGGTAGATGCCTCTCTAG < 41bp 1 0.782437344040594 NA NA experiment 0.435125311918811 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment TRAF7 ENSG00000131653 UTR5 Human protein_coding chr16:2213898 chr16:2213902 . . 0 25 hm7G_associated_SNPs_255 0 0 1 0 1 TRAF7 chr16:2213884 3'AG 2213884 Downstream 19bp 177 chr16 2258797 2258797 1 + G A rs201873488 2258812 + 2258792 2258832 41 GTGGAGACTGGAGAGATCAAGAGAGAGTATGGCGGCCACCA GTGGAAACTGGAGAGATCAAGAGAGAGTATGGCGGCCACCA < 41bp 1 0.759288890480551 NA NA experiment 0.481422219038899 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258812 chr16:2258797 synonymous SNV . 0 6 hm7G_associated_SNPs_256 0 0 1 0 1 MLST8 chr16:2258760 3'AG 2258760 Downstream 38bp 178 chr16 2564116 2564116 1 + C A rs558602394 2564119 + 2564099 2564139 41 GCAGACATGTCCGAGTCCAAGAGCGGCCCCGAGTATGCTTC GCAGACATGTCCGAGTCAAAGAGCGGCCCCGAGTATGCTTC < 41bp 1 0.562032009765684 NA NA experiment 0.875935980468632 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ATP6V0C ENSG00000185883;ENSG00000259784 CDS Human other chr16:2564119 chr16:2564116 synonymous SNV . 0 18 hm7G_associated_SNPs_257 0 0 1 0 2 ATP6V0C chr16:2564081 3'AG 2564081 Downstream 36bp 179 chr16 2564116 2564116 1 + C A rs558602394 2564119 + 2564099 2564139 41 GCAGACATGTCCGAGTCCAAGAGCGGCCCCGAGTATGCTTC GCAGACATGTCCGAGTCAAAGAGCGGCCCCGAGTATGCTTC < 41bp 1 0.562032009765684 NA NA experiment 0.875935980468632 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ATP6V0C ENSG00000185883;ENSG00000259784 CDS Human other chr16:2564119 chr16:2564116 synonymous SNV . 0 18 hm7G_associated_SNPs_257 0 0 1 0 2 ATP6V0C chr16:2564183 5'GT 2564183 Upstream 68bp 180 chr16 28994515 28994515 1 + C T rs201354349 28994535 + 28994515 28994555 41 CGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCC TGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCC < 41bp 1 0.795160897849705 NA NA experiment 0.40967820430059 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994535 chr16:28994515 synonymous SNV . 0 1 hm7G_associated_SNPs_259 0 0 0 0 2 SPNS1 chr16:28994513 3'AG 28994513 Downstream 3bp 181 chr16 28994515 28994515 1 + C T rs201354349 28994535 + 28994515 28994555 41 CGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCC TGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCC < 41bp 1 0.795160897849705 NA NA experiment 0.40967820430059 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994535 chr16:28994515 synonymous SNV . 0 1 hm7G_associated_SNPs_259 0 0 0 0 2 SPNS1 chr16:28994611 5'GT 28994611 Upstream 97bp 182 chr16 29994922 29994922 1 + C T rs3814883 29994923 + 29994903 29994943 41 CCACTTCCACCACCTCTTCCGCCCGCCGCCGGGCCTACTGC CCACTTCCACCACCTCTTCTGCCCGCCGCCGGGCCTACTGC < 41bp 1 0.696697508160716 NA NA experiment 0.606604983678568 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994923 chr16:29994922 synonymous SNV . 0 20 hm7G_associated_SNPs_260 0 1 1 0 2 TAOK2 chr16:29994824 3'AG 29994824 Downstream 99bp 183 chr16 29994922 29994922 1 + C T rs3814883 29994923 + 29994903 29994943 41 CCACTTCCACCACCTCTTCCGCCCGCCGCCGGGCCTACTGC CCACTTCCACCACCTCTTCTGCCCGCCGCCGGGCCTACTGC < 41bp 1 0.696697508160716 NA NA experiment 0.606604983678568 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994923 chr16:29994922 synonymous SNV . 0 20 hm7G_associated_SNPs_260 0 1 1 0 2 TAOK2 chr16:29994985 5'GT 29994985 Upstream 64bp 184 chr16 56764084 56764084 1 + C G rs8064120 56764087 + 56764067 56764107 41 AGCGGCGGCCGCGTCCTCAAGCCGGCACCTGAGCGGCGGAG AGCGGCGGCCGCGTCCTGAAGCCGGCACCTGAGCGGCGGAG < 41bp 1 0.454742278866917 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NUP93 ENSG00000102900 UTR5 Human protein_coding chr16:56764087 chr16:56764084 . . 0 18 hm7G_associated_SNPs_262 0 0 1 0 1 NUP93 chr16:56764123 5'GT 56764123 Upstream 40bp 185 chr16 56973993 56973993 1 + T C rs75439444 56974000 + 56973980 56974020 41 ATTTGCGGATGAATGCACAAGGTGGCCCTATTGTGGAAGAA ATTTGCGGATGAACGCACAAGGTGGCCCTATTGTGGAAGAA < 41bp 1 0.783078300736688 NA NA experiment 0.433843398526624 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56974000 chr16:56973993 synonymous SNV . 0 14 hm7G_associated_SNPs_263 0 0 1 0 1 HERPUD1 chr16:56974000 5'GT 56974000 Upstream 8bp 186 chr16 57484957 57484957 1 + C G rs140264612 57484969 + 57484949 57484989 41 CAGTGGCCCGTTGCCGACAAGCCCTGGTGCCGCGTGCCTTC CAGTGGCCGGTTGCCGACAAGCCCTGGTGCCGCGTGCCTTC < 41bp 1 0.707185064448167 NA NA experiment 0.585629871103666 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment COQ9 ENSG00000088682 CDS Human protein_coding chr16:57484969 chr16:57484957 nonsynonymous SNV 0.809 2 9 hm7G_associated_SNPs_264 1 0 1 0 1 COQ9 chr16:57484952 3'AG 57484952 Downstream 6bp 187 chr16 57484980 57484980 1 + G A rs223864 57484969 + 57484949 57484989 41 CAGTGGCCCGTTGCCGACAAGCCCTGGTGCCGCGTGCCTTC CAGTGGCCCGTTGCCGACAAGCCCTGGTGCCACGTGCCTTC < 41bp 1 0.642400676730438 NA NA experiment 0.715198646539125 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment COQ9 ENSG00000088682 CDS Human protein_coding chr16:57484969 chr16:57484980 synonymous SNV . 0 32 hm7G_associated_SNPs_265 2 0 1 0 1 COQ9 chr16:57484952 3'AG 57484952 Downstream 29bp 188 chr16 77756430 77756430 1 + G A rs370686788 77756422 + 77756402 77756442 41 CCCAGAGCTGCTCTGCGCAAGCGCGACCGACCGAGCAGCTC CCCAGAGCTGCTCTGCGCAAGCGCGACCAACCGAGCAGCTC < 41bp 1 0.711742878823727 NA NA experiment 0.576514242352546 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment NUDT7 ENSG00000140876 UTR5 Human protein_coding chr16:77756422 chr16:77756430 . . 0 29 hm7G_associated_SNPs_268 0 0 0 0 1 NUDT7 chr16:77756514 5'GT 77756514 Upstream 85bp 189 chr16 77756433 77756433 1 + C A rs114814225 77756422 + 77756402 77756442 41 CCCAGAGCTGCTCTGCGCAAGCGCGACCGACCGAGCAGCTC CCCAGAGCTGCTCTGCGCAAGCGCGACCGACAGAGCAGCTC < 41bp 1 0.735170755024102 NA NA experiment 0.529658489951796 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment NUDT7 ENSG00000140876 UTR5 Human protein_coding chr16:77756422 chr16:77756433 . . 0 32 hm7G_associated_SNPs_269 0 0 1 0 1 NUDT7 chr16:77756514 5'GT 77756514 Upstream 82bp 190 chr16 89753080 89753080 1 + C A rs191685085 89753096 + 89753076 89753116 41 GCGTCTGCGCCTGCGCGCAAGAGAGGCGGGGCCAGCGCTCG GCGTATGCGCCTGCGCGCAAGAGAGGCGGGGCCAGCGCTCG < 41bp 1 0.715457184814919 NA NA experiment 0.569085630370161 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CDK10 ENSG00000185324 UTR5 Human protein_coding chr16:89753096 chr16:89753080 . . 0 5 hm7G_associated_SNPs_270 0 0 1 0 1 CDK10 chr16:89753167 5'GT 89753167 Upstream 88bp 191 chr16 89753099 89753099 1 + A C rs543938798 89753096 + 89753076 89753116 41 GCGTCTGCGCCTGCGCGCAAGAGAGGCGGGGCCAGCGCTCG GCGTCTGCGCCTGCGCGCAAGAGCGGCGGGGCCAGCGCTCG < 41bp 1 0.708838120436054 NA NA experiment 0.582323759127891 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CDK10 ENSG00000185324 UTR5 Human protein_coding chr16:89753096 chr16:89753099 . . 0 24 hm7G_associated_SNPs_271 0 0 0 0 1 CDK10 chr16:89753167 5'GT 89753167 Upstream 69bp 192 chr17 6919824 6919824 1 + A G rs550676046 6919844 + 6919824 6919864 41 AAGGCCACTGTGAAACGCAAGGTATATGAAGATTCTGGCAT GAGGCCACTGTGAAACGCAAGGTATATGAAGATTCTGGCAT < 41bp 1 0.789124394369966 NA NA experiment 0.421751211260068 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment C17orf49 ENSG00000161939;ENSG00000258315 CDS Human other chr17:6919844 chr17:6919824 nonsynonymous SNV 1.000 4 1 hm7G_associated_SNPs_276 0 0 1 0 1 C17orf49 chr17:6919814 3'AG 6919814 Downstream 11bp 193 chr17 7851530 7851530 1 + G A rs140013111 7851513 + 7851493 7851533 41 CTTGGGAGGAAGCCCCTCAAGTGCCACGTATTCCACCGCCT CTTGGGAGGAAGCCCCTCAAGTGCCACGTATTCCACCACCT < 41bp 1 0.372179336729093 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CNTROB ENSG00000170037 CDS Human protein_coding chr17:7851513 chr17:7851530 synonymous SNV . 0 38 hm7G_associated_SNPs_277 0 0 1 0 1 CNTROB chr17:7851475 3'AG 7851475 Downstream 56bp 194 chr17 49238593 49238593 1 + C T rs137925518 49238592 + 49238572 49238612 41 ACCAACCCTGCAGACTCCAAGCCTGGGACCATCCGTGGAGA ACCAACCCTGCAGACTCCAAGTCTGGGACCATCCGTGGAGA < 41bp 1 0.759833315797247 NA NA experiment 0.480333368405507 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NME1;NME1-NME2 ENSG00000011052;ENSG00000239672;ENSG00000243678 CDS Human other chr17:49238592 chr17:49238593 nonsynonymous SNV 0.999 3 22 hm7G_associated_SNPs_280 0 0 1 0 2 NME1;NME1-NME2 chr17:49238521 3'AG 49238521 Downstream 73bp 195 chr17 49238593 49238593 1 + C T rs137925518 49238592 + 49238572 49238612 41 ACCAACCCTGCAGACTCCAAGCCTGGGACCATCCGTGGAGA ACCAACCCTGCAGACTCCAAGTCTGGGACCATCCGTGGAGA < 41bp 1 0.759833315797247 NA NA experiment 0.480333368405507 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NME1;NME1-NME2 ENSG00000011052;ENSG00000239672;ENSG00000243678 CDS Human other chr17:49238592 chr17:49238593 nonsynonymous SNV 0.999 3 22 hm7G_associated_SNPs_280 0 0 1 0 2 NME1;NME1-NME2 chr17:49238633 5'GT 49238633 Upstream 41bp 196 chr17 72200304 72200304 1 + C T rs149248512 72200292 + 72200272 72200312 41 CGGAAAATTGAGGAAATCAAGGACTTCCTGCTCACAGCCCG CGGAAAATTGAGGAAATCAAGGACTTCCTGCTTACAGCCCG < 41bp 1 0.761879111678234 NA NA experiment 0.476241776643533 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72200292 chr17:72200304 synonymous SNV . 0 33 hm7G_associated_SNPs_282 0 0 1 0 2 RPL38 chr17:72200269 3'AG 72200269 Downstream 36bp 197 chr17 72200304 72200304 1 + C T rs149248512 72200292 + 72200272 72200312 41 CGGAAAATTGAGGAAATCAAGGACTTCCTGCTCACAGCCCG CGGAAAATTGAGGAAATCAAGGACTTCCTGCTTACAGCCCG < 41bp 1 0.761879111678234 NA NA experiment 0.476241776643533 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72200292 chr17:72200304 synonymous SNV . 0 33 hm7G_associated_SNPs_282 0 0 1 0 2 RPL38 chr17:72200329 5'GT 72200329 Upstream 26bp 198 chr17 79634813 79634813 1 + T C rs11546632 79634829 + 79634809 79634849 41 AGATTCCTTTCCGGCTCCGGGAGATTATGAGGAGCCGCCAA AGATCCCTTTCCGGCTCCGGGAGATTATGAGGAGCCGCCAA < 41bp 1 0.63144147678476 NA NA experiment 0.737117046430479 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79634829 chr17:79634813 synonymous SNV . 0 5 hm7G_associated_SNPs_285 0 0 1 0 2 CCDC137 chr17:79634759 3'AG 79634759 Downstream 55bp 199 chr17 79634813 79634813 1 + T C rs11546632 79634829 + 79634809 79634849 41 AGATTCCTTTCCGGCTCCGGGAGATTATGAGGAGCCGCCAA AGATCCCTTTCCGGCTCCGGGAGATTATGAGGAGCCGCCAA < 41bp 1 0.63144147678476 NA NA experiment 0.737117046430479 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79634829 chr17:79634813 synonymous SNV . 0 5 hm7G_associated_SNPs_285 0 0 1 0 2 CCDC137 chr17:79634892 5'GT 79634892 Upstream 80bp 200 chr19 1106585 1106585 1 + T C rs371481974 1106580 + 1106560 1106600 41 CACTATTTCTAGCTCCACAAGTGTGTGGCCCCGCCCGAGCC CACTATTTCTAGCTCCACAAGTGTGCGGCCCCGCCCGAGCC < 41bp 1 0.712346216327486 NA NA experiment 0.575307567345028 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GPX4 ENSG00000167468 CDS Human protein_coding chr19:1106580 chr19:1106585 nonsynonymous SNV . 0 26 hm7G_associated_SNPs_289 0 0 1 0 1 GPX4 chr19:1106539 3'AG 1106539 Downstream 47bp 201 chr19 5131091 5131091 1 + C T rs115799672 5131093 + 5131073 5131113 41 TCCTCTTCCCACAGAGGACGGGAGGGGCAAGCTGCGGCCAA TCCTCTTCCCACAGAGGATGGGAGGGGCAAGCTGCGGCCAA < 41bp 1 0.410481248870578 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5131093 chr19:5131091 synonymous SNV . 0 19 hm7G_associated_SNPs_296 0 0 1 0 1 KDM4B chr19:5131087 3'AG 5131087 Downstream 5bp 202 chr19 10367404 10367404 1 + G A rs143363894 10367401 + 10367381 10367421 41 CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGCGGGG CAGAGCTATGCCAAGACCAAGACAAGAGCCGAGGTGCGGGG < 41bp 1 0.77459563405264 NA NA experiment 0.450808731894719 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367401 chr19:10367404 synonymous SNV . 0 24 hm7G_associated_SNPs_298 0 0 1 0 2 MRPL4 chr19:10367384 3'AG 10367384 Downstream 21bp 203 chr19 10367404 10367404 1 + G A rs143363894 10367401 + 10367381 10367421 41 CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGCGGGG CAGAGCTATGCCAAGACCAAGACAAGAGCCGAGGTGCGGGG < 41bp 1 0.77459563405264 NA NA experiment 0.450808731894719 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367401 chr19:10367404 synonymous SNV . 0 24 hm7G_associated_SNPs_298 0 0 1 0 2 MRPL4 chr19:10367501 5'GT 10367501 Upstream 98bp 204 chr19 13885484 13885484 1 + A G rs10104 13885485 + 13885465 13885505 41 GGTCGTGTTATCGCTCCCAAGAAGGCGCGCGTCGTGCAGCA GGTCGTGTTATCGCTCCCAGGAAGGCGCGCGTCGTGCAGCA < 41bp 1 0.668898756323377 NA NA experiment 0.662202487353246 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13885485 chr19:13885484 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_300 0 0 1 0 2 C19orf53 chr19:13885466 3'AG 13885466 Downstream 19bp 205 chr19 13885484 13885484 1 + A G rs10104 13885485 + 13885465 13885505 41 GGTCGTGTTATCGCTCCCAAGAAGGCGCGCGTCGTGCAGCA GGTCGTGTTATCGCTCCCAGGAAGGCGCGCGTCGTGCAGCA < 41bp 1 0.668898756323377 NA NA experiment 0.662202487353246 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13885485 chr19:13885484 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_300 0 0 1 0 2 C19orf53 chr19:13885521 5'GT 13885521 Upstream 38bp 206 chr19 18288721 18288721 1 + A G rs191513645 18288718 + 18288698 18288738 41 CTCAGGAGTGTTTGCTTCAAGTGATGGCCGGTGAGCTGCGG CTCAGGAGTGTTTGCTTCAAGTGGTGGCCGGTGAGCTGCGG < 41bp 1 0.686248772624615 NA NA experiment 0.62750245475077 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control IFI30 ENSG00000216490 CDS Human protein_coding chr19:18288718 chr19:18288721 stoploss 0.010 0 24 hm7G_associated_SNPs_301 0 0 1 0 1 IFI30 chr19:18288659 3'AG 18288659 Downstream 63bp 207 chr19 18288727 18288727 1 + G A rs551748369 18288718 + 18288698 18288738 41 CTCAGGAGTGTTTGCTTCAAGTGATGGCCGGTGAGCTGCGG CTCAGGAGTGTTTGCTTCAAGTGATGGCCAGTGAGCTGCGG < 41bp 1 0.652685349221693 NA NA experiment 0.694629301556613 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control IFI30 ENSG00000216490;ENSG00000268173 UTR3 Human protein_coding chr19:18288718 chr19:18288727 . . 0 30 hm7G_associated_SNPs_302 0 0 1 0 1 IFI30 chr19:18288659 3'AG 18288659 Downstream 69bp 208 chr19 18288737 18288737 1 + G A rs571503439 18288718 + 18288698 18288738 41 CTCAGGAGTGTTTGCTTCAAGTGATGGCCGGTGAGCTGCGG CTCAGGAGTGTTTGCTTCAAGTGATGGCCGGTGAGCTGCAG < 41bp 1 0.676814927971727 NA NA experiment 0.646370144056546 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control IFI30 ENSG00000216490;ENSG00000268173 UTR3 Human protein_coding chr19:18288718 chr19:18288737 . . 0 40 hm7G_associated_SNPs_303 0 0 1 0 1 IFI30 chr19:18288659 3'AG 18288659 Downstream 79bp 209 chr19 33078211 33078211 1 + C T rs185754385 33078214 + 33078194 33078234 41 TGACGATTATTGAACTACAAGTGCTCACAGACTAGAACTTA TGACGATTATTGAACTATAAGTGCTCACAGACTAGAACTTA < 41bp 1 0.41738404071548 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PDCD5 ENSG00000105185 UTR3 Human protein_coding chr19:33078214 chr19:33078211 . . 0 18 hm7G_associated_SNPs_310 0 0 1 0 1 PDCD5 chr19:33078159 3'AG 33078159 Downstream 53bp 210 chr19 36142187 36142187 1 + C T rs7991 36142184 + 36142164 36142204 41 ACCAAAATCAAGAACTACAAGACCGCCCCTTTTGACAGCCG ACCAAAATCAAGAACTACAAGACTGCCCCTTTTGACAGCCG < 41bp 1 0.783493263122358 NA NA experiment 0.433013473755283 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142184 chr19:36142187 nonsynonymous SNV . 0 24 hm7G_associated_SNPs_312 2 0 1 0 2 COX6B1 chr19:36142135 3'AG 36142135 Downstream 53bp 211 chr19 36142187 36142187 1 + C T rs7991 36142184 + 36142164 36142204 41 ACCAAAATCAAGAACTACAAGACCGCCCCTTTTGACAGCCG ACCAAAATCAAGAACTACAAGACTGCCCCTTTTGACAGCCG < 41bp 1 0.783493263122358 NA NA experiment 0.433013473755283 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142184 chr19:36142187 nonsynonymous SNV . 0 24 hm7G_associated_SNPs_312 2 0 1 0 2 COX6B1 chr19:36142251 5'GT 36142251 Upstream 65bp 212 chr19 39219707 39219707 1 + C T rs374021622 39219705 + 39219685 39219725 41 GCGGCCTTGTGACCTTCCAAGCCTTCATCGACTTCATGTCG GCGGCCTTGTGACCTTCCAAGCTTTCATCGACTTCATGTCG < 41bp 1 0.435882044042327 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219705 chr19:39219707 synonymous SNV . 0 23 hm7G_associated_SNPs_313 0 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 88bp 213 chr19 41903747 41903747 1 + C A rs17173144 41903732 + 41903712 41903752 41 GCTGAGTGGTTGTTAGCCAAGATGGCGGTAGCGATCGCTGC GCTGAGTGGTTGTTAGCCAAGATGGCGGTAGCGATAGCTGC < 41bp 1 0.596376900466765 NA NA experiment 0.807246199066471 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment BCKDHA ENSG00000248098 CDS Human protein_coding chr19:41903732 chr19:41903747 synonymous SNV . 0 36 hm7G_associated_SNPs_318 0 0 1 0 1 BCKDHA chr19:41903840 5'GT 41903840 Upstream 94bp 214 chr19 48254308 48254308 1 + A G rs146968654 48254302 + 48254282 48254322 41 CCTCAACCCTTCTGCAACAAGGGCCAAGCCCGGGCCCCAGG CCTCAACCCTTCTGCAACAAGGGCCAGGCCCGGGCCCCAGG < 41bp 1 0.727902279236879 NA NA experiment 0.544195441526243 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254302 chr19:48254308 nonsynonymous SNV 0.026 1 27 hm7G_associated_SNPs_320 0 0 1 0 1 NOP53 chr19:48254364 5'GT 48254364 Upstream 57bp 215 chr19 48254308 48254308 1 + A G rs146968654 48254309 + 48254289 48254329 41 CCTTCTGCAACAAGGGCCAAGCCCGGGCCCCAGGACACCGT CCTTCTGCAACAAGGGCCAGGCCCGGGCCCCAGGACACCGT < 41bp 1 0.440788599839163 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254309 chr19:48254308 nonsynonymous SNV 0.026 1 20 hm7G_associated_SNPs_321 0 0 1 0 1 NOP53 chr19:48254364 5'GT 48254364 Upstream 57bp 216 chr19 49507542 49507542 1 + A G rs11558800 49507543 + 49507523 49507563 41 CCCACCCACAGGCTTCGCAAGGCATGGTGGGTCAGCTGGCG CCCACCCACAGGCTTCGCAGGGCATGGTGGGTCAGCTGGCG < 41bp 1 0.789118476079406 NA NA experiment 0.421763047841188 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49507543 chr19:49507542 synonymous SNV . 0 20 hm7G_associated_SNPs_322 0 0 1 0 2 RUVBL2 chr19:49507464 3'AG 49507464 Downstream 79bp 217 chr19 49507542 49507542 1 + A G rs11558800 49507543 + 49507523 49507563 41 CCCACCCACAGGCTTCGCAAGGCATGGTGGGTCAGCTGGCG CCCACCCACAGGCTTCGCAGGGCATGGTGGGTCAGCTGGCG < 41bp 1 0.789118476079406 NA NA experiment 0.421763047841188 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49507543 chr19:49507542 synonymous SNV . 0 20 hm7G_associated_SNPs_322 0 0 1 0 2 RUVBL2 chr19:49507534 3'AG 49507534 Downstream 9bp 218 chr19 50432622 50432622 1 - G A rs11083991 50432641 - 50432621 50432661 41 TCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTCG TCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTTG < 41bp 1 0.79314778321781 NA NA experiment 0.41370443356438 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ATF5;IL4I1;NUP62 ENSG00000104951;ENSG00000169136;ENSG00000213024 UTR5 Human other chr19:50432641 chr19:50432622 . . 0 40 hm7G_associated_SNPs_323 0 0 1 0 2 ATF5;IL4I1;NUP62 chr19:50432583 5'GT 50432583 Upstream 40bp 219 chr19 50432622 50432622 1 - G A rs11083991 50432641 - 50432621 50432661 41 TCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTCG TCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTTG < 41bp 1 0.79314778321781 NA NA experiment 0.41370443356438 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ATF5;IL4I1;NUP62 ENSG00000104951;ENSG00000169136;ENSG00000213024 UTR5 Human other chr19:50432641 chr19:50432622 . . 0 40 hm7G_associated_SNPs_323 0 0 1 0 2 ATF5;IL4I1;NUP62 chr19:50432607 5'GT 50432607 Upstream 16bp 220 chr19 55899362 55899362 1 + C T rs114248857 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTTAG < 41bp 1 0.730788420866805 NA NA experiment 0.53842315826639 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899362 nonsynonymous SNV 0.769 0 39 hm7G_associated_SNPs_325 0 0 1 1 2 RPL28 chr19:55899298 3'AG 55899298 Downstream 65bp 221 chr19 55899362 55899362 1 + C T rs114248857 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTTAG < 41bp 1 0.730788420866805 NA NA experiment 0.53842315826639 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899362 nonsynonymous SNV 0.769 0 39 hm7G_associated_SNPs_325 0 0 1 1 2 RPL28 chr19:55899416 5'GT 55899416 Upstream 55bp 222 chr19 56172525 56172525 1 + C T rs73936310 56172511 + 56172491 56172531 41 GGAGCCAGATGACCAGACAAGCCCGGCGCCTCTACGTGGGC GGAGCCAGATGACCAGACAAGCCCGGCGCCTCTATGTGGGC < 41bp 1 0.604648948653534 NA NA experiment 0.790702102692932 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172511 chr19:56172525 synonymous SNV . 0 35 hm7G_associated_SNPs_326 0 0 1 0 1 U2AF2 chr19:56172555 5'GT 56172555 Upstream 31bp 223 chr19 56172528 56172528 1 + G T rs73936311 56172511 + 56172491 56172531 41 GGAGCCAGATGACCAGACAAGCCCGGCGCCTCTACGTGGGC GGAGCCAGATGACCAGACAAGCCCGGCGCCTCTACGTTGGC < 41bp 1 0.597773429184197 NA NA experiment 0.804453141631605 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172511 chr19:56172528 synonymous SNV . 0 38 hm7G_associated_SNPs_327 0 0 1 0 1 U2AF2 chr19:56172555 5'GT 56172555 Upstream 28bp 224 chr19 58817459 58817459 1 + A G rs1133822 58817469 + 58817449 58817489 41 TCCAGAAGCAACCGTGACAAGTGGTGCCCGACCAGGGACCT TCCAGAAGCAGCCGTGACAAGTGGTGCCCGACCAGGGACCT < 41bp 1 0.498731705962305 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ERVK3-1;ZNF8-ERVK3-1 ENSG00000142396 ncRNA_exonic Human protein_coding chr19:58817469 chr19:58817459 . . 0 11 hm7G_associated_SNPs_328 0 0 1 0 1 ERVK3-1;ZNF8-ERVK3-1 chr19:58817454 3'AG 58817454 Downstream 6bp 225 chr19 58817484 58817484 1 + G A rs111549114 58817469 + 58817449 58817489 41 TCCAGAAGCAACCGTGACAAGTGGTGCCCGACCAGGGACCT TCCAGAAGCAACCGTGACAAGTGGTGCCCGACCAGAGACCT < 41bp 1 0.434290992511854 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ERVK3-1;ZNF8-ERVK3-1 ENSG00000142396 ncRNA_exonic Human protein_coding chr19:58817469 chr19:58817484 . . 0 36 hm7G_associated_SNPs_329 0 0 1 0 2 ERVK3-1;ZNF8-ERVK3-1 chr19:58817454 3'AG 58817454 Downstream 31bp 226 chr19 58817484 58817484 1 + G A rs111549114 58817469 + 58817449 58817489 41 TCCAGAAGCAACCGTGACAAGTGGTGCCCGACCAGGGACCT TCCAGAAGCAACCGTGACAAGTGGTGCCCGACCAGAGACCT < 41bp 1 0.434290992511854 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ERVK3-1;ZNF8-ERVK3-1 ENSG00000142396 ncRNA_exonic Human protein_coding chr19:58817469 chr19:58817484 . . 0 36 hm7G_associated_SNPs_329 0 0 1 0 2 ERVK3-1;ZNF8-ERVK3-1 chr19:58817582 5'GT 58817582 Upstream 99bp 227 chr19 59056805 59056805 1 + C G rs75494560 59056814 + 59056794 59056834 41 GTGGACTGTCCCGTGTGCAAGCAACAGTGCTTCTCCAAAGA GTGGACTGTCCGGTGTGCAAGCAACAGTGCTTCTCCAAAGA < 41bp 1 0.61333932942302 NA NA experiment 0.773321341153959 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59056814 chr19:59056805 synonymous SNV . 0 12 hm7G_associated_SNPs_330 0 0 1 0 2 TRIM28 chr19:59056792 3'AG 59056792 Downstream 14bp 228 chr19 59056805 59056805 1 + C G rs75494560 59056814 + 59056794 59056834 41 GTGGACTGTCCCGTGTGCAAGCAACAGTGCTTCTCCAAAGA GTGGACTGTCCGGTGTGCAAGCAACAGTGCTTCTCCAAAGA < 41bp 1 0.61333932942302 NA NA experiment 0.773321341153959 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59056814 chr19:59056805 synonymous SNV . 0 12 hm7G_associated_SNPs_330 0 0 1 0 2 TRIM28 chr19:59056904 5'GT 59056904 Upstream 100bp 229 chr20 1145000 1145000 1 + C A rs114332593 1145012 + 1144992 1145032 41 CCTGAGATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCT CCTGAGATATGGCTTCCCAAGAGCACTTATTGACCCTTCCT < 41bp 1 0.572653124484955 NA NA experiment 0.854693751030091 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1145012 chr20:1145000 nonsynonymous SNV 0.999 4 9 hm7G_associated_SNPs_331 0 0 1 0 1 PSMF1 chr20:1144962 3'AG 1144962 Downstream 39bp 230 chr20 44527028 44527028 1 + C A rs149971062 44527035 + 44527015 44527055 41 CACATGGTTCCCACCGACAAGCCCCTCGCTGCCTTCACCAT CACATGGTTCCCAACGACAAGCCCCTCGCTGCCTTCACCAT < 41bp 1 0.792253571120618 NA NA experiment 0.415492857758765 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44527035 chr20:44527028 nonsynonymous SNV 0.996 2 14 hm7G_associated_SNPs_333 0 0 1 0 1 CTSA chr20:44527006 3'AG 44527006 Downstream 23bp 231 chr20 57484241 57484241 1 + C T rs8620 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAAGATCGACGTGATTAAGCAGGC < 41bp 1 0.726834623246146 NA NA experiment 0.546330753507708 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484241 synonymous SNV . 0 33 hm7G_associated_SNPs_334 0 0 1 0 2 GNAS chr20:57484217 3'AG 57484217 Downstream 25bp 232 chr20 57484241 57484241 1 + C T rs8620 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAAGATCGACGTGATTAAGCAGGC < 41bp 1 0.726834623246146 NA NA experiment 0.546330753507708 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484241 synonymous SNV . 0 33 hm7G_associated_SNPs_334 0 0 1 0 2 GNAS chr20:57484271 5'GT 57484271 Upstream 31bp 233 chr22 31302259 31302259 1 + T C rs200895779 31302266 + 31302246 31302286 41 GAGATGGCCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAA GAGATGGCCTGTGCGTACAAGGGCGGCTACTGGGAGGCCAA < 41bp 1 0.696619971015758 NA NA experiment 0.606760057968485 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31302266 chr22:31302259 nonsynonymous SNV 0.995 0 14 hm7G_associated_SNPs_340 0 0 1 0 2 OSBP2 chr22:31302181 3'AG 31302181 Downstream 79bp 234 chr22 31302259 31302259 1 + T C rs200895779 31302266 + 31302246 31302286 41 GAGATGGCCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAA GAGATGGCCTGTGCGTACAAGGGCGGCTACTGGGAGGCCAA < 41bp 1 0.696619971015758 NA NA experiment 0.606760057968485 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31302266 chr22:31302259 nonsynonymous SNV 0.995 0 14 hm7G_associated_SNPs_340 0 0 1 0 2 OSBP2 chr22:31302184 3'AG 31302184 Downstream 76bp 235 chr22 41914532 41914532 1 + C T rs150129663 41914513 + 41914493 41914533 41 AATCTAGCTGATGAATTCAAGGATCACTTGGTGCCTGACCC AATCTAGCTGATGAATTCAAGGATCACTTGGTGCCTGACTC < 41bp 1 0.686445197922089 NA NA experiment 0.627109604155822 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ACO2 ENSG00000100412 CDS Human protein_coding chr22:41914513 chr22:41914532 nonsynonymous SNV 0.994 0 40 hm7G_associated_SNPs_343 0 0 1 0 2 ACO2 chr22:41914485 3'AG 41914485 Downstream 48bp 236 chr22 41914532 41914532 1 + C T rs150129663 41914513 + 41914493 41914533 41 AATCTAGCTGATGAATTCAAGGATCACTTGGTGCCTGACCC AATCTAGCTGATGAATTCAAGGATCACTTGGTGCCTGACTC < 41bp 1 0.686445197922089 NA NA experiment 0.627109604155822 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ACO2 ENSG00000100412 CDS Human protein_coding chr22:41914513 chr22:41914532 nonsynonymous SNV 0.994 0 40 hm7G_associated_SNPs_343 0 0 1 0 2 ACO2 chr22:41914576 5'GT 41914576 Upstream 45bp 237 chr22 50874851 50874851 1 + G A rs78837601 50874834 + 50874814 50874854 41 GTGGCCGCTGGGAGAGCTTCGTGGAGGAGACGCTGACGGAG GTGGCCGCTGGGAGAGCTTCGTGGAGGAGACGCTGACAGAG < 41bp 1 0.526337157126538 NA NA experiment 0.947325685746925 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50874834 chr22:50874851 synonymous SNV . 0 38 hm7G_associated_SNPs_344 0 0 1 0 2 PPP6R2 chr22:50874796 3'AG 50874796 Downstream 56bp 238 chr22 50874851 50874851 1 + G A rs78837601 50874834 + 50874814 50874854 41 GTGGCCGCTGGGAGAGCTTCGTGGAGGAGACGCTGACGGAG GTGGCCGCTGGGAGAGCTTCGTGGAGGAGACGCTGACAGAG < 41bp 1 0.526337157126538 NA NA experiment 0.947325685746925 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50874834 chr22:50874851 synonymous SNV . 0 38 hm7G_associated_SNPs_344 0 0 1 0 2 PPP6R2 chr22:50874881 5'GT 50874881 Upstream 31bp 239 chr17 36912138 36912138 1 + C T ACC 36912151 + 36912131 36912171 41 CTCAGTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGA CTCAGTGTCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGA < 41bp 1 0.771976254155517 NA NA experiment 0.456047491688967 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMB3 ENSG00000108294 CDS Human other chr17:36912151 chr17:36912138 nonsynonymous SNV 0.888 1 8 hm7G_associated_SNPs_346 0 0 1 0 1 PSMB3 chr17:36912136 3'AG 36912136 Downstream 3bp 240 chr16 2564109 2564109 1 + C G ACC 2564119 + 2564099 2564139 41 GCAGACATGTCCGAGTCCAAGAGCGGCCCCGAGTATGCTTC GCAGACATGTGCGAGTCCAAGAGCGGCCCCGAGTATGCTTC < 41bp 1 0.580522878650033 NA NA experiment 0.838954242699934 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ATP6V0C ENSG00000185883;ENSG00000259784 CDS Human other chr16:2564119 chr16:2564109 nonsynonymous SNV 0.234 0 11 hm7G_associated_SNPs_347 0 0 1 0 2 ATP6V0C chr16:2564081 3'AG 2564081 Downstream 29bp 241 chr16 2564109 2564109 1 + C G ACC 2564119 + 2564099 2564139 41 GCAGACATGTCCGAGTCCAAGAGCGGCCCCGAGTATGCTTC GCAGACATGTGCGAGTCCAAGAGCGGCCCCGAGTATGCTTC < 41bp 1 0.580522878650033 NA NA experiment 0.838954242699934 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ATP6V0C ENSG00000185883;ENSG00000259784 CDS Human other chr16:2564119 chr16:2564109 nonsynonymous SNV 0.234 0 11 hm7G_associated_SNPs_347 0 0 1 0 2 ATP6V0C chr16:2564183 5'GT 2564183 Upstream 75bp 242 chr5 172315747 172315747 1 + G A ACC 172315729 + 172315709 172315749 41 ATCTACAGGAAGGTGCCCAAGGACCTTACGCAGCCAACGTA ATCTACAGGAAGGTGCCCAAGGACCTTACGCAGCCAACATA < 41bp 1 0.35740102236463 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315729 chr5:172315747 synonymous SNV . 0 39 hm7G_associated_SNPs_348 0 0 1 0 2 ERGIC1 chr5:172315702 3'AG 172315702 Downstream 46bp 243 chr5 172315747 172315747 1 + G A ACC 172315729 + 172315709 172315749 41 ATCTACAGGAAGGTGCCCAAGGACCTTACGCAGCCAACGTA ATCTACAGGAAGGTGCCCAAGGACCTTACGCAGCCAACATA < 41bp 1 0.35740102236463 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315729 chr5:172315747 synonymous SNV . 0 39 hm7G_associated_SNPs_348 0 0 1 0 2 ERGIC1 chr5:172315763 5'GT 172315763 Upstream 17bp 244 chr20 44567879 44567879 1 + G A BLCA 44567862 + 44567842 44567882 41 GCCTGTTTGCAGAGGAGCTGGTGCATGCAGGCTGGGAGAAG GCCTGTTTGCAGAGGAGCTGGTGCATGCAGGCTGGGAAAAG < 41bp 1 0.480750674746931 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44567862 chr20:44567879 synonymous SNV . 0 38 hm7G_associated_SNPs_350 0 0 0 0 2 PCIF1 chr20:44567854 3'AG 44567854 Downstream 26bp 245 chr20 44567879 44567879 1 + G A BLCA 44567862 + 44567842 44567882 41 GCCTGTTTGCAGAGGAGCTGGTGCATGCAGGCTGGGAGAAG GCCTGTTTGCAGAGGAGCTGGTGCATGCAGGCTGGGAAAAG < 41bp 1 0.480750674746931 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44567862 chr20:44567879 synonymous SNV . 0 38 hm7G_associated_SNPs_350 0 0 0 0 2 PCIF1 chr20:44567978 5'GT 44567978 Upstream 100bp 246 chr2 27448053 27448053 1 + G A BLCA 27448067 + 27448047 27448087 41 CTGCCAGAATGGCAGAGATCGGAGAGCATGTGGCCCCGAGC CTGCCAAAATGGCAGAGATCGGAGAGCATGTGGCCCCGAGC < 41bp 1 0.653230702864028 NA NA experiment 0.693538594271944 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448067 chr2:27448053 nonsynonymous SNV 0.766 2 7 hm7G_associated_SNPs_351 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 59bp 247 chr2 27448053 27448053 1 + G A BLCA 27448068 + 27448048 27448088 41 TGCCAGAATGGCAGAGATCGGAGAGCATGTGGCCCCGAGCG TGCCAAAATGGCAGAGATCGGAGAGCATGTGGCCCCGAGCG < 41bp 1 0.55519147027397 NA NA experiment 0.88961705945206 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448068 chr2:27448053 nonsynonymous SNV 0.766 2 6 hm7G_associated_SNPs_352 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 59bp 248 chr1 155279912 155279912 1 + G T BLCA 155279892 + 155279872 155279912 41 ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAG ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAT < 41bp 1 0.738639541626925 NA NA experiment 0.52272091674615 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FDPS ENSG00000160752 CDS Human protein_coding chr1:155279892 chr1:155279912 nonsynonymous SNV 0.989 0 41 hm7G_associated_SNPs_353 0 0 1 0 3 FDPS chr1:155279834 3'AG 155279834 Downstream 79bp 249 chr1 155279912 155279912 1 + G T BLCA 155279892 + 155279872 155279912 41 ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAG ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAT < 41bp 1 0.738639541626925 NA NA experiment 0.52272091674615 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FDPS ENSG00000160752 CDS Human protein_coding chr1:155279892 chr1:155279912 nonsynonymous SNV 0.989 0 41 hm7G_associated_SNPs_353 0 0 1 0 3 FDPS chr1:155279855 3'AG 155279855 Downstream 58bp 250 chr1 155279912 155279912 1 + G T BLCA 155279892 + 155279872 155279912 41 ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAG ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAT < 41bp 1 0.738639541626925 NA NA experiment 0.52272091674615 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FDPS ENSG00000160752 CDS Human protein_coding chr1:155279892 chr1:155279912 nonsynonymous SNV 0.989 0 41 hm7G_associated_SNPs_353 0 0 1 0 3 FDPS chr1:155279996 5'GT 155279996 Upstream 85bp 251 chr6 33170401 33170401 1 + G C BLCA 33170388 + 33170368 33170408 41 GGAAGAAGAAAAGGAAACAAGAGGGGTTCAGAAGAGGCGAG GGAAGAAGAAAAGGAAACAAGAGGGGTTCAGAACAGGCGAG < 41bp 1 0.580430710491631 NA NA experiment 0.839138579016739 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33170388 chr6:33170401 nonsynonymous SNV 0.760 1 34 hm7G_associated_SNPs_354 0 0 1 0 2 SLC39A7 chr6:33170337 3'AG 33170337 Downstream 65bp 252 chr6 33170401 33170401 1 + G C BLCA 33170388 + 33170368 33170408 41 GGAAGAAGAAAAGGAAACAAGAGGGGTTCAGAAGAGGCGAG GGAAGAAGAAAAGGAAACAAGAGGGGTTCAGAACAGGCGAG < 41bp 1 0.580430710491631 NA NA experiment 0.839138579016739 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33170388 chr6:33170401 nonsynonymous SNV 0.760 1 34 hm7G_associated_SNPs_354 0 0 1 0 2 SLC39A7 chr6:33170477 5'GT 33170477 Upstream 77bp 253 chr19 13885491 13885491 1 + G T BLCA 13885485 + 13885465 13885505 41 GGTCGTGTTATCGCTCCCAAGAAGGCGCGCGTCGTGCAGCA GGTCGTGTTATCGCTCCCAAGAAGGCTCGCGTCGTGCAGCA < 41bp 1 0.770523219004547 NA NA experiment 0.458953561990907 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13885485 chr19:13885491 nonsynonymous SNV . 0 27 hm7G_associated_SNPs_355 0 0 1 0 2 C19orf53 chr19:13885466 3'AG 13885466 Downstream 26bp 254 chr19 13885491 13885491 1 + G T BLCA 13885485 + 13885465 13885505 41 GGTCGTGTTATCGCTCCCAAGAAGGCGCGCGTCGTGCAGCA GGTCGTGTTATCGCTCCCAAGAAGGCTCGCGTCGTGCAGCA < 41bp 1 0.770523219004547 NA NA experiment 0.458953561990907 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13885485 chr19:13885491 nonsynonymous SNV . 0 27 hm7G_associated_SNPs_355 0 0 1 0 2 C19orf53 chr19:13885521 5'GT 13885521 Upstream 31bp 255 chr19 10793285 10793285 1 + G A BLCA 10793266 + 10793246 10793286 41 GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGA GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGAA < 41bp 1 0.710499105982564 NA NA experiment 0.579001788034872 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793266 chr19:10793285 nonsynonymous SNV 0.016 1 40 hm7G_associated_SNPs_356 0 0 1 0 2 ILF3 chr19:10793213 3'AG 10793213 Downstream 73bp 256 chr19 10793285 10793285 1 + G A BLCA 10793266 + 10793246 10793286 41 GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGA GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGAA < 41bp 1 0.710499105982564 NA NA experiment 0.579001788034872 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793266 chr19:10793285 nonsynonymous SNV 0.016 1 40 hm7G_associated_SNPs_356 0 0 1 0 2 ILF3 chr19:10793380 5'GT 10793380 Upstream 96bp 257 chr19 10793282 10793282 1 + G A BLCA 10793266 + 10793246 10793286 41 GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGA GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTAAGGA < 41bp 1 0.695298669212794 NA NA experiment 0.609402661574412 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793266 chr19:10793282 nonsynonymous SNV 0.017 1 37 hm7G_associated_SNPs_357 0 0 1 0 2 ILF3 chr19:10793213 3'AG 10793213 Downstream 70bp 258 chr19 10793282 10793282 1 + G A BLCA 10793266 + 10793246 10793286 41 GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGA GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTAAGGA < 41bp 1 0.695298669212794 NA NA experiment 0.609402661574412 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793266 chr19:10793282 nonsynonymous SNV 0.017 1 37 hm7G_associated_SNPs_357 0 0 1 0 2 ILF3 chr19:10793380 5'GT 10793380 Upstream 99bp 259 chr6 32945996 32945996 1 + C A BLCA 32945998 + 32945978 32946018 41 AAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGG AAAGAGAAAAAGAAGAAAAGGAAGGCAGAGAAGCATCGAGG < 41bp 1 0.537970515360963 NA NA experiment 0.924058969278073 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32945998 chr6:32945996 synonymous SNV . 0 19 hm7G_associated_SNPs_361 0 0 1 0 1 BRD2 chr6:32945903 3'AG 32945903 Downstream 94bp 260 chr12 110784080 110784080 1 + C T BLCA 110784098 + 110784078 110784118 41 CTCATGGATGAGACGCTCAAGTTTGTGGCCCGCAACTACCT CTTATGGATGAGACGCTCAAGTTTGTGGCCCGCAACTACCT < 41bp 1 0.533125869597861 NA NA experiment 0.933748260804279 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110784098 chr12:110784080 synonymous SNV . 0 3 hm7G_associated_SNPs_365 0 0 1 0 1 ATP2A2 chr12:110784126 5'GT 110784126 Upstream 47bp 261 chr11 57509671 57509671 1 + G C BLCA 57509654 + 57509634 57509674 41 TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAG TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTCAAG < 41bp 1 0.70604422182745 NA NA experiment 0.587911556345099 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SELENOH ENSG00000211450;ENSG00000254732 CDS Human protein_coding chr11:57509654 chr11:57509671 unknown 0.998 3 38 hm7G_associated_SNPs_366 0 0 1 0 2 SELENOH chr11:57509589 3'AG 57509589 Downstream 83bp 262 chr11 57509671 57509671 1 + G C BLCA 57509654 + 57509634 57509674 41 TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAG TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTCAAG < 41bp 1 0.70604422182745 NA NA experiment 0.587911556345099 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SELENOH ENSG00000211450;ENSG00000254732 CDS Human other chr11:57509654 chr11:57509671 unknown 0.998 3 38 hm7G_associated_SNPs_366 0 0 1 0 2 TMX2-CTNND1 chr11:57509719 5'GT 57509719 Upstream 49bp 263 chr11 1973375 1973375 1 + C T BLCA 1973365 + 1973345 1973385 41 CTTCGCCTCCAGAATGACAAGGGTGGACCTCAGGAATTACC CTTCGCCTCCAGAATGACAAGGGTGGACCTTAGGAATTACC < 41bp 1 0.721245234147326 NA NA experiment 0.557509531705348 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973365 chr11:1973375 synonymous SNV . 0 31 hm7G_associated_SNPs_367 0 0 1 0 2 MRPL23 chr11:1973357 3'AG 1973357 Downstream 19bp 264 chr11 1973375 1973375 1 + C T BLCA 1973365 + 1973345 1973385 41 CTTCGCCTCCAGAATGACAAGGGTGGACCTCAGGAATTACC CTTCGCCTCCAGAATGACAAGGGTGGACCTTAGGAATTACC < 41bp 1 0.721245234147326 NA NA experiment 0.557509531705348 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973365 chr11:1973375 synonymous SNV . 0 31 hm7G_associated_SNPs_367 0 0 1 0 2 MRPL23 chr11:1973439 5'GT 1973439 Upstream 65bp 265 chr21 45161560 45161560 1 + G A BLCA 45161571 + 45161551 45161591 41 ATGCCCACTGGAAGGGCCAAGTGCTGAATTCAGATGAGCTC ATGCCCACTAGAAGGGCCAAGTGCTGAATTCAGATGAGCTC < 41bp 1 0.343604093869693 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45161571 chr21:45161560 stopgain 0.998 1 10 hm7G_associated_SNPs_368 0 0 1 0 2 PDXK chr21:45161548 3'AG 45161548 Downstream 13bp 266 chr21 45161560 45161560 1 + G A BLCA 45161571 + 45161551 45161591 41 ATGCCCACTGGAAGGGCCAAGTGCTGAATTCAGATGAGCTC ATGCCCACTAGAAGGGCCAAGTGCTGAATTCAGATGAGCTC < 41bp 1 0.343604093869693 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45161571 chr21:45161560 stopgain 0.998 1 10 hm7G_associated_SNPs_368 0 0 1 0 2 PDXK chr21:45161652 5'GT 45161652 Upstream 93bp 267 chr19 1978449 1978449 1 + C T BLCA 1978452 + 1978432 1978472 41 TGCCCCCAGGAGCCGATCAAGTCCCGGGCCCCGCAGCTGCA TGCCCCCAGGAGCCGATTAAGTCCCGGGCCCCGCAGCTGCA < 41bp 1 0.686694893908629 NA NA experiment 0.626610212182743 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978452 chr19:1978449 synonymous SNV . 0 18 hm7G_associated_SNPs_369 0 0 1 0 2 CSNK1G2 chr19:1978441 3'AG 1978441 Downstream 9bp 268 chr19 1978449 1978449 1 + C T BLCA 1978452 + 1978432 1978472 41 TGCCCCCAGGAGCCGATCAAGTCCCGGGCCCCGCAGCTGCA TGCCCCCAGGAGCCGATTAAGTCCCGGGCCCCGCAGCTGCA < 41bp 1 0.686694893908629 NA NA experiment 0.626610212182743 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978452 chr19:1978449 synonymous SNV . 0 18 hm7G_associated_SNPs_369 0 0 1 0 2 CSNK1G2 chr19:1978510 5'GT 1978510 Upstream 62bp 269 chr1 201843465 201843465 1 + C T BLCA 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGTCGCT < 41bp 1 0.388698705080855 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843465 nonsynonymous SNV 0.989 1 37 hm7G_associated_SNPs_370 0 0 1 0 2 IPO9 chr1:201843378 3'AG 201843378 Downstream 88bp 270 chr1 201843465 201843465 1 + C T BLCA 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGTCGCT < 41bp 1 0.388698705080855 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843465 nonsynonymous SNV 0.989 1 37 hm7G_associated_SNPs_370 0 0 1 0 2 IPO9 chr1:201843500 5'GT 201843500 Upstream 36bp 271 chr17 78280110 78280110 1 + C G BLCA 78280117 + 78280097 78280137 41 CATAGACGAGCCTCTCTTCCGGTCCTGGTTTAGTCTGCTAC CATAGACGAGCCTGTCTTCCGGTCCTGGTTTAGTCTGCTAC < 41bp 1 0.227047093726419 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78280117 chr17:78280110 nonsynonymous SNV 0.190 4 14 hm7G_associated_SNPs_371 0 0 1 0 1 RNF213 chr17:78280052 3'AG 78280052 Downstream 59bp 272 chr20 57485051 57485051 1 + T C BLCA 57485045 + 57485025 57485065 41 GTGATCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAA GTGATCCTGTTCCTCAACAAGCAAGACCTGCTCGCTGAGAA < 41bp 1 0.638367147227134 NA NA experiment 0.723265705545732 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485045 chr20:57485051 synonymous SNV . 0 27 hm7G_associated_SNPs_373 0 0 1 4 2 GNAS chr20:57485006 3'AG 57485006 Downstream 46bp 273 chr20 57485051 57485051 1 + T C BLCA 57485045 + 57485025 57485065 41 GTGATCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAA GTGATCCTGTTCCTCAACAAGCAAGACCTGCTCGCTGAGAA < 41bp 1 0.638367147227134 NA NA experiment 0.723265705545732 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485045 chr20:57485051 synonymous SNV . 0 27 hm7G_associated_SNPs_373 0 0 1 4 2 GNAS chr20:57485136 5'GT 57485136 Upstream 86bp 274 chr20 57485051 57485051 1 + T C BLCA 57485049 + 57485029 57485069 41 TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAAGTC TCCTGTTCCTCAACAAGCAAGACCTGCTCGCTGAGAAAGTC < 41bp 1 0.477234911651163 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485049 chr20:57485051 synonymous SNV . 0 23 hm7G_associated_SNPs_374 0 0 1 4 2 GNAS chr20:57485006 3'AG 57485006 Downstream 46bp 275 chr20 57485051 57485051 1 + T C BLCA 57485049 + 57485029 57485069 41 TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAAGTC TCCTGTTCCTCAACAAGCAAGACCTGCTCGCTGAGAAAGTC < 41bp 1 0.477234911651163 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485049 chr20:57485051 synonymous SNV . 0 23 hm7G_associated_SNPs_374 0 0 1 4 2 GNAS chr20:57485136 5'GT 57485136 Upstream 86bp 276 chr7 149575806 149575806 1 + C A BLCA 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTGTTAGGGCCCCAGCTGAAGAA < 41bp 1 0.768613104283605 NA NA experiment 0.46277379143279 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575806 nonsynonymous SNV 0.988 0 24 hm7G_associated_SNPs_375 0 0 1 0 3 ATP6V0E2 chr7:149575767 3'AG 149575767 Downstream 40bp 277 chr7 149575806 149575806 1 + C A BLCA 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTGTTAGGGCCCCAGCTGAAGAA < 41bp 1 0.768613104283605 NA NA experiment 0.46277379143279 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575806 nonsynonymous SNV 0.988 0 24 hm7G_associated_SNPs_375 0 0 1 0 3 ATP6V0E2 chr7:149575835 5'GT 149575835 Upstream 30bp 278 chr7 149575806 149575806 1 + C A BLCA 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTGTTAGGGCCCCAGCTGAAGAA < 41bp 1 0.768613104283605 NA NA experiment 0.46277379143279 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human antisense chr7:149575803 chr7:149575806 nonsynonymous SNV 0.988 0 24 hm7G_associated_SNPs_375 0 0 1 0 3 ATP6V0E2 chr7:149575879 5'GT 149575879 Upstream 74bp 279 chr19 47646815 47646815 1 + C T BLCA 47646811 + 47646791 47646831 41 CTTGGGGCTGAAATTGCCAAGAATCTCATCTTGGCAGGAGT CTTGGGGCTGAAATTGCCAAGAATTTCATCTTGGCAGGAGT < 41bp 1 0.579551028704626 NA NA experiment 0.840897942590747 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646811 chr19:47646815 nonsynonymous SNV 1.000 4 25 hm7G_associated_SNPs_376 0 0 1 0 2 SAE1 chr19:47646751 3'AG 47646751 Downstream 65bp 280 chr19 47646815 47646815 1 + C T BLCA 47646811 + 47646791 47646831 41 CTTGGGGCTGAAATTGCCAAGAATCTCATCTTGGCAGGAGT CTTGGGGCTGAAATTGCCAAGAATTTCATCTTGGCAGGAGT < 41bp 1 0.579551028704626 NA NA experiment 0.840897942590747 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646811 chr19:47646815 nonsynonymous SNV 1.000 4 25 hm7G_associated_SNPs_376 0 0 1 0 2 SAE1 chr19:47646862 5'GT 47646862 Upstream 48bp 281 chr22 24129392 24129392 1 + G A BLCA 24129380 + 24129360 24129400 41 ATGATGATGGCGCTGAGCAAGACCTTCGGGCAGAAGCCCGT ATGATGATGGCGCTGAGCAAGACCTTCGGGCAAAAGCCCGT < 41bp 1 0.754820492652238 NA NA experiment 0.490359014695523 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCB1 ENSG00000099956 CDS Human protein_coding chr22:24129380 chr22:24129392 synonymous SNV . 0 33 hm7G_associated_SNPs_377 0 0 1 0 1 SMARCB1 chr22:24129449 5'GT 24129449 Upstream 58bp 282 chr12 56618691 56618691 1 + G T BLCA 56618685 + 56618665 56618705 41 GATATCAAGCCTGGGCTCAAGAATCTGAACCTTATCTTCAT GATATCAAGCCTGGGCTCAAGAATCTTAACCTTATCTTCAT < 41bp 1 0.593296284924353 NA NA experiment 0.813407430151293 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NABP2 ENSG00000139579 CDS Human protein_coding chr12:56618685 chr12:56618691 synonymous SNV . 0 27 hm7G_associated_SNPs_379 0 0 1 0 2 NABP2 chr12:56618618 3'AG 56618618 Downstream 74bp 283 chr12 56618691 56618691 1 + G T BLCA 56618685 + 56618665 56618705 41 GATATCAAGCCTGGGCTCAAGAATCTGAACCTTATCTTCAT GATATCAAGCCTGGGCTCAAGAATCTTAACCTTATCTTCAT < 41bp 1 0.593296284924353 NA NA experiment 0.813407430151293 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NABP2 ENSG00000139579 CDS Human protein_coding chr12:56618685 chr12:56618691 synonymous SNV . 0 27 hm7G_associated_SNPs_379 0 0 1 0 2 NABP2 chr12:56618719 5'GT 56618719 Upstream 29bp 284 chr20 57484238 57484238 1 + G A BLCA 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAAGATCGACGTAATCAAGCAGGC < 41bp 1 0.72040588021537 NA NA experiment 0.559188239569259 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484238 synonymous SNV . 0 30 hm7G_associated_SNPs_380 0 0 1 0 2 GNAS chr20:57484217 3'AG 57484217 Downstream 22bp 285 chr20 57484238 57484238 1 + G A BLCA 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAAGATCGACGTAATCAAGCAGGC < 41bp 1 0.72040588021537 NA NA experiment 0.559188239569259 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484238 synonymous SNV . 0 30 hm7G_associated_SNPs_380 0 0 1 0 2 GNAS chr20:57484271 5'GT 57484271 Upstream 34bp 286 chr4 54324885 54324885 1 + G A BLCA 54324870 + 54324850 54324890 41 TGCAGAAAGAGGTTATGAGCGTCACAGAGCAAGTCGAGAAA TGCAGAAAGAGGTTATGAGCGTCACAGAGCAAGTCAAGAAA < 41bp 1 0.455184408765109 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54324870 chr4:54324885 nonsynonymous SNV 0.691 3 36 hm7G_associated_SNPs_384 0 0 1 0 2 FIP1L1 chr4:54324820 3'AG 54324820 Downstream 66bp 287 chr4 54324885 54324885 1 + G A BLCA 54324870 + 54324850 54324890 41 TGCAGAAAGAGGTTATGAGCGTCACAGAGCAAGTCGAGAAA TGCAGAAAGAGGTTATGAGCGTCACAGAGCAAGTCAAGAAA < 41bp 1 0.455184408765109 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54324870 chr4:54324885 nonsynonymous SNV 0.691 3 36 hm7G_associated_SNPs_384 0 0 1 0 2 FIP1L1 chr4:54324957 5'GT 54324957 Upstream 73bp 288 chr6 33243640 33243640 1 + G A BLCA 33243633 + 33243613 33243653 41 GCAGACATTGACCTCACCAAGAGGGCGGGAGAACTCACTGA GCAGACATTGACCTCACCAAGAGGGCGAGAGAACTCACTGA < 41bp 1 0.76920005849098 NA NA experiment 0.46159988301804 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243633 chr6:33243640 nonsynonymous SNV 0.998 3 28 hm7G_associated_SNPs_385 0 0 1 0 1 RPS18 chr6:33243660 5'GT 33243660 Upstream 21bp 289 chr1 26795418 26795418 1 + G C BLCA 26795415 + 26795395 26795435 41 GACATGTATGCAGAGGAGCGGAAGAGGCAGCAGCTGGAGAG GACATGTATGCAGAGGAGCGGAACAGGCAGCAGCTGGAGAG < 41bp 1 0.787799098229146 NA NA experiment 0.424401803541708 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26795415 chr1:26795418 nonsynonymous SNV 1.000 0 24 hm7G_associated_SNPs_387 0 0 1 0 2 DHDDS chr1:26795383 3'AG 26795383 Downstream 36bp 290 chr1 26795418 26795418 1 + G C BLCA 26795415 + 26795395 26795435 41 GACATGTATGCAGAGGAGCGGAAGAGGCAGCAGCTGGAGAG GACATGTATGCAGAGGAGCGGAACAGGCAGCAGCTGGAGAG < 41bp 1 0.787799098229146 NA NA experiment 0.424401803541708 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26795415 chr1:26795418 nonsynonymous SNV 1.000 0 24 hm7G_associated_SNPs_387 0 0 1 0 2 DHDDS chr1:26795386 3'AG 26795386 Downstream 33bp 291 chr5 134679035 134679035 1 - G C BLCA 134679048 - 134679028 134679068 41 CCAGTTTGGGGTGCAGACAAGTGTGAAGAACTTCTGGAAAA CCAGTTTGGGGTGCAGACAAGTGTGAAGAACTTGTGGAAAA < 41bp 1 0.796876108376649 NA NA experiment 0.406247783246702 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment C5orf66;H2AFY ENSG00000113648;ENSG00000224186 CDS Human other chr5:134679048 chr5:134679035 nonsynonymous SNV 1.000 4 34 hm7G_associated_SNPs_388 0 0 1 0 2 C5orf66;H2AFY chr5:134678950 5'GT 134678950 Upstream 86bp 292 chr5 134679035 134679035 1 - G C BLCA 134679048 - 134679028 134679068 41 CCAGTTTGGGGTGCAGACAAGTGTGAAGAACTTCTGGAAAA CCAGTTTGGGGTGCAGACAAGTGTGAAGAACTTGTGGAAAA < 41bp 1 0.796876108376649 NA NA experiment 0.406247783246702 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment C5orf66;H2AFY ENSG00000113648;ENSG00000224186 CDS Human other chr5:134679048 chr5:134679035 nonsynonymous SNV 1.000 4 34 hm7G_associated_SNPs_388 0 0 1 0 2 C5orf66;H2AFY chr5:134679124 3'AG 134679124 Downstream 90bp 293 chr19 17692013 17692013 1 + C G BLCA 17691998 + 17691978 17692018 41 CCCCCCAGGTCCGAGTACAAGGCCCACTTCTCCCTCCGCAA CCCCCCAGGTCCGAGTACAAGGCCCACTTCTCCCTGCGCAA < 41bp 1 0.634039373913908 NA NA experiment 0.731921252172185 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17691998 chr19:17692013 synonymous SNV . 0 36 hm7G_associated_SNPs_389 0 0 1 0 1 COLGALT1 chr19:17691986 3'AG 17691986 Downstream 28bp 294 chr11 61912705 61912705 1 + G A BLCA 61912702 + 61912682 61912722 41 AGCGGGTGGAGCAGATGAAGGAGGAGAAGAAGAAGCAGATT AGCGGGTGGAGCAGATGAAGGAGAAGAAGAAGAAGCAGATT < 41bp 1 0.742286349083111 NA NA experiment 0.515427301833778 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61912702 chr11:61912705 nonsynonymous SNV 0.998 4 24 hm7G_associated_SNPs_390 0 0 1 0 2 INCENP chr11:61912641 3'AG 61912641 Downstream 65bp 295 chr11 61912705 61912705 1 + G A BLCA 61912702 + 61912682 61912722 41 AGCGGGTGGAGCAGATGAAGGAGGAGAAGAAGAAGCAGATT AGCGGGTGGAGCAGATGAAGGAGAAGAAGAAGAAGCAGATT < 41bp 1 0.742286349083111 NA NA experiment 0.515427301833778 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control INCENP ENSG00000149503 CDS Human protein_coding chr11:61912702 chr11:61912705 nonsynonymous SNV 0.998 4 24 hm7G_associated_SNPs_390 0 0 1 0 2 INCENP chr11:61912761 5'GT 61912761 Upstream 57bp 296 chr11 70265929 70265929 1 + C G BLCA 70265914 + 70265894 70265934 41 ACAAAGTGGATAAGAGCGCCGTTGGCTTTGAGTATCAAGGC ACAAAGTGGATAAGAGCGCCGTTGGCTTTGAGTATGAAGGC < 41bp 1 0.757034492505194 NA NA experiment 0.485931014989611 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70265914 chr11:70265929 nonsynonymous SNV 0.900 3 36 hm7G_associated_SNPs_391 0 0 1 0 2 CTTN chr11:70265852 3'AG 70265852 Downstream 78bp 297 chr11 70265929 70265929 1 + C G BLCA 70265914 + 70265894 70265934 41 ACAAAGTGGATAAGAGCGCCGTTGGCTTTGAGTATCAAGGC ACAAAGTGGATAAGAGCGCCGTTGGCTTTGAGTATGAAGGC < 41bp 1 0.757034492505194 NA NA experiment 0.485931014989611 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70265914 chr11:70265929 nonsynonymous SNV 0.900 3 36 hm7G_associated_SNPs_391 0 0 1 0 2 CTTN chr11:70265962 5'GT 70265962 Upstream 34bp 298 chr19 56206575 56206575 1 + C T BLCA 56206572 + 56206552 56206592 41 CAGCCCGCGCCTCCCGCGACGCTCACCCTGAACCAGCTCCG CAGCCCGCGCCTCCCGCGACGCTTACCCTGAACCAGCTCCG < 41bp 1 0.555916158206884 NA NA experiment 0.888167683586233 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206572 chr19:56206575 synonymous SNV . 0 24 hm7G_associated_SNPs_395 0 0 1 0 1 EPN1 chr19:56206514 3'AG 56206514 Downstream 62bp 299 chr11 43465053 43465053 1 + G A BLCA 43465039 + 43465019 43465059 41 GGCGGCGTCTAGACTTACAAGGAATACGGGTGCTGAAGAAA GGCGGCGTCTAGACTTACAAGGAATACGGGTGCTAAAGAAA < 41bp 1 0.541337165779886 NA NA experiment 0.917325668440228 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465039 chr11:43465053 synonymous SNV . 0 35 hm7G_associated_SNPs_396 0 0 1 0 1 TTC17 chr11:43465134 5'GT 43465134 Upstream 82bp 300 chr20 57480468 57480468 1 + G C BLCA 57480458 + 57480438 57480478 41 GAATTCTATGAGCATGCCAAGGCTCTGTGGGAGGATGAAGG GAATTCTATGAGCATGCCAAGGCTCTGTGGCAGGATGAAGG < 41bp 1 0.673264077647084 NA NA experiment 0.653471844705831 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57480458 chr20:57480468 nonsynonymous SNV 1.000 1 31 hm7G_associated_SNPs_397 0 0 1 0 2 GNAS chr20:57480438 3'AG 57480438 Downstream 31bp 301 chr20 57480468 57480468 1 + G C BLCA 57480458 + 57480438 57480478 41 GAATTCTATGAGCATGCCAAGGCTCTGTGGGAGGATGAAGG GAATTCTATGAGCATGCCAAGGCTCTGTGGCAGGATGAAGG < 41bp 1 0.673264077647084 NA NA experiment 0.653471844705831 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57480458 chr20:57480468 nonsynonymous SNV 1.000 1 31 hm7G_associated_SNPs_397 0 0 1 0 2 GNAS chr20:57480535 5'GT 57480535 Upstream 68bp 302 chr16 30780218 30780218 1 + G C BLCA 30780205 + 30780185 30780225 41 GGAATTGGAGGAGAGGGATCGAAGGGAGAGCAAGAAGATCG GGAATTGGAGGAGAGGGATCGAAGGGAGAGCAACAAGATCG < 41bp 1 0.769277774975104 NA NA experiment 0.461444450049793 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30780205 chr16:30780218 nonsynonymous SNV 0.998 4 34 hm7G_associated_SNPs_398 0 0 1 0 2 RNF40 chr16:30780159 3'AG 30780159 Downstream 60bp 303 chr16 30780218 30780218 1 + G C BLCA 30780205 + 30780185 30780225 41 GGAATTGGAGGAGAGGGATCGAAGGGAGAGCAAGAAGATCG GGAATTGGAGGAGAGGGATCGAAGGGAGAGCAACAAGATCG < 41bp 1 0.769277774975104 NA NA experiment 0.461444450049793 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30780205 chr16:30780218 nonsynonymous SNV 0.998 4 34 hm7G_associated_SNPs_398 0 0 1 0 2 RNF40 chr16:30780308 5'GT 30780308 Upstream 91bp 304 chr17 5324736 5324736 1 + G A BLCA 5324721 + 5324701 5324741 41 AGAACAGCTTTCTAGTTCAAGAGGTGATGGAAGAAGAGTGG AGAACAGCTTTCTAGTTCAAGAGGTGATGGAAGAAAAGTGG < 41bp 1 0.675652182331058 NA NA experiment 0.648695635337884 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPAIN ENSG00000129197 CDS Human protein_coding chr17:5324721 chr17:5324736 nonsynonymous SNV 1.000 4 36 hm7G_associated_SNPs_399 0 0 1 0 1 RPAIN chr17:5324786 5'GT 5324786 Upstream 51bp 305 chr16 30744638 30744638 1 + C G BLCA 30744641 + 30744621 30744661 41 GTGCTGTTGCGGCAGCTCAAGGCAGAGGGCCACCGAGTGCT GTGCTGTTGCGGCAGCTGAAGGCAGAGGGCCACCGAGTGCT < 41bp 1 0.585180434883461 NA NA experiment 0.829639130233079 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SRCAP ENSG00000080603 CDS Human protein_coding chr16:30744641 chr16:30744638 synonymous SNV . 0 18 hm7G_associated_SNPs_400 0 0 1 0 1 SRCAP chr16:30744601 3'AG 30744601 Downstream 38bp 306 chr22 45970446 45970446 1 + G A BLCA 45970430 + 45970410 45970450 41 GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACGATGT GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACAATGT < 41bp 1 0.342577357039825 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45970430 chr22:45970446 nonsynonymous SNV 0.776 1 37 hm7G_associated_SNPs_402 0 0 0 0 2 FBLN1 chr22:45970391 3'AG 45970391 Downstream 56bp 307 chr22 45970446 45970446 1 + G A BLCA 45970430 + 45970410 45970450 41 GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACGATGT GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACAATGT < 41bp 1 0.342577357039825 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45970430 chr22:45970446 nonsynonymous SNV 0.776 1 37 hm7G_associated_SNPs_402 0 0 0 0 2 FBLN1 chr22:45970533 5'GT 45970533 Upstream 88bp 308 chr19 1978471 1978471 1 + C T BLCA 1978452 + 1978432 1978472 41 TGCCCCCAGGAGCCGATCAAGTCCCGGGCCCCGCAGCTGCA TGCCCCCAGGAGCCGATCAAGTCCCGGGCCCCGCAGCTGTA < 41bp 1 0.654274749378996 NA NA experiment 0.691450501242008 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978452 chr19:1978471 nonsynonymous SNV 0.999 1 40 hm7G_associated_SNPs_403 0 0 1 0 2 CSNK1G2 chr19:1978441 3'AG 1978441 Downstream 31bp 309 chr19 1978471 1978471 1 + C T BLCA 1978452 + 1978432 1978472 41 TGCCCCCAGGAGCCGATCAAGTCCCGGGCCCCGCAGCTGCA TGCCCCCAGGAGCCGATCAAGTCCCGGGCCCCGCAGCTGTA < 41bp 1 0.654274749378996 NA NA experiment 0.691450501242008 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978452 chr19:1978471 nonsynonymous SNV 0.999 1 40 hm7G_associated_SNPs_403 0 0 1 0 2 CSNK1G2 chr19:1978510 5'GT 1978510 Upstream 40bp 310 chr20 62660773 62660773 1 + G C BLCA 62660785 + 62660765 62660805 41 AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAA AGGCCCCACAGGAGGACCAAGAGCGTGGATGCCCTGAAGAA < 41bp 1 0.774795368974047 NA NA experiment 0.450409262051905 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62660785 chr20:62660773 nonsynonymous SNV 1.000 1 9 hm7G_associated_SNPs_404 0 0 1 0 2 PRPF6 chr20:62660730 3'AG 62660730 Downstream 44bp 311 chr20 62660773 62660773 1 + G C BLCA 62660785 + 62660765 62660805 41 AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAA AGGCCCCACAGGAGGACCAAGAGCGTGGATGCCCTGAAGAA < 41bp 1 0.774795368974047 NA NA experiment 0.450409262051905 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62660785 chr20:62660773 nonsynonymous SNV 1.000 1 9 hm7G_associated_SNPs_404 0 0 1 0 2 PRPF6 chr20:62660844 5'GT 62660844 Upstream 72bp 312 chr2 220099551 220099551 1 + C T BLCA 220099559 + 220099539 220099579 41 TTTCCCTAGGTTCAGGGTCGGAGGGAGAAGATGGCTTTCAG TTTCCCTAGGTTTAGGGTCGGAGGGAGAAGATGGCTTTCAG < 41bp 1 0.685879685570637 NA NA experiment 0.628240628858726 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220099559 chr2:220099551 nonsynonymous SNV 0.795 0 13 hm7G_associated_SNPs_405 0 0 1 1 1 ANKZF1 chr2:220099548 3'AG 220099548 Downstream 4bp 313 chr9 139733489 139733489 1 + C G BLCA 139733476 + 139733456 139733496 41 CAGGCCCCGTCCCCAGTCAAGACATCACTCTTTCGAGTGAG CAGGCCCCGTCCCCAGTCAAGACATCACTCTTTGGAGTGAG < 41bp 1 0.152629419904336 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABL6 ENSG00000196642 CDS Human protein_coding chr9:139733476 chr9:139733489 nonsynonymous SNV 0.287 3 34 hm7G_associated_SNPs_406 0 0 1 0 1 RABL6 chr9:139733573 5'GT 139733573 Upstream 85bp 314 chr16 30095063 30095063 1 + G A BLCA 30095051 + 30095031 30095071 41 GGACAATCGACCGAAAGCAAGAGGTGCCTCATGATGGGCCC GGACAATCGACCGAAAGCAAGAGGTGCCTCATAATGGGCCC < 41bp 1 0.731643143010518 NA NA experiment 0.536713713978964 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095051 chr16:30095063 nonsynonymous SNV 0.977 2 33 hm7G_associated_SNPs_407 0 0 1 1 2 PPP4C chr16:30094976 3'AG 30094976 Downstream 88bp 315 chr16 30095063 30095063 1 + G A BLCA 30095051 + 30095031 30095071 41 GGACAATCGACCGAAAGCAAGAGGTGCCTCATGATGGGCCC GGACAATCGACCGAAAGCAAGAGGTGCCTCATAATGGGCCC < 41bp 1 0.731643143010518 NA NA experiment 0.536713713978964 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095051 chr16:30095063 nonsynonymous SNV 0.977 2 33 hm7G_associated_SNPs_407 0 0 1 1 2 PPP4C chr16:30095102 5'GT 30095102 Upstream 40bp 316 chr17 80422187 80422187 1 + G A BLCA 80422195 + 80422175 80422215 41 CACAAGTTGGCTGATGCCAAGATATTTTTGAGCGACTGCCT CACAAGTTGGCTAATGCCAAGATATTTTTGAGCGACTGCCT < 41bp 1 0.778588405760687 NA NA experiment 0.442823188478626 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment NARF ENSG00000141562 CDS Human protein_coding chr17:80422195 chr17:80422187 nonsynonymous SNV 1.000 0 13 hm7G_associated_SNPs_408 0 0 1 0 1 NARF chr17:80422163 3'AG 80422163 Downstream 25bp 317 chrX 114856614 114856614 1 + G C BLCA 114856610 + 114856590 114856630 41 GAACTTCATGAGCTCTTCAAGGAAGCTAATATGCCATTACC GAACTTCATGAGCTCTTCAAGGAACCTAATATGCCATTACC < 41bp 1 0.558730479875037 NA NA experiment 0.882539040249926 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856610 chrX:114856614 nonsynonymous SNV 0.995 2 25 hm7G_associated_SNPs_410 0 0 1 1 2 PLS3 chrX:114856558 3'AG 114856558 Downstream 57bp 318 chrX 114856614 114856614 1 + G C BLCA 114856610 + 114856590 114856630 41 GAACTTCATGAGCTCTTCAAGGAAGCTAATATGCCATTACC GAACTTCATGAGCTCTTCAAGGAACCTAATATGCCATTACC < 41bp 1 0.558730479875037 NA NA experiment 0.882539040249926 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856610 chrX:114856614 nonsynonymous SNV 0.995 2 25 hm7G_associated_SNPs_410 0 0 1 1 2 PLS3 chrX:114856640 5'GT 114856640 Upstream 27bp 319 chr19 50302103 50302103 1 + G T BRCA 50302114 + 50302094 50302134 41 CTGGAGACTGTGCTCAACAAGGCCCAGGAGCCCCCCAAATC CTGGAGACTTTGCTCAACAAGGCCCAGGAGCCCCCCAAATC < 41bp 1 0.527492134803729 NA NA experiment 0.945015730392543 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302114 chr19:50302103 nonsynonymous SNV 1.000 2 10 hm7G_associated_SNPs_412 0 0 1 0 1 AP2A1 chr19:50302059 3'AG 50302059 Downstream 45bp 320 chr19 41903744 41903744 1 + G A BRCA 41903732 + 41903712 41903752 41 GCTGAGTGGTTGTTAGCCAAGATGGCGGTAGCGATCGCTGC GCTGAGTGGTTGTTAGCCAAGATGGCGGTAGCAATCGCTGC < 41bp 1 0.604839526451155 NA NA experiment 0.79032094709769 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment BCKDHA ENSG00000248098 CDS Human protein_coding chr19:41903732 chr19:41903744 synonymous SNV . 0 33 hm7G_associated_SNPs_413 0 0 1 0 1 BCKDHA chr19:41903840 5'GT 41903840 Upstream 97bp 321 chr17 79634810 79634810 1 + G C BRCA 79634829 + 79634809 79634849 41 AGATTCCTTTCCGGCTCCGGGAGATTATGAGGAGCCGCCAA ACATTCCTTTCCGGCTCCGGGAGATTATGAGGAGCCGCCAA < 41bp 1 0.706326402268539 NA NA experiment 0.587347195462921 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79634829 chr17:79634810 nonsynonymous SNV 0.997 5 2 hm7G_associated_SNPs_414 0 0 1 0 2 CCDC137 chr17:79634759 3'AG 79634759 Downstream 52bp 322 chr17 79634810 79634810 1 + G C BRCA 79634829 + 79634809 79634849 41 AGATTCCTTTCCGGCTCCGGGAGATTATGAGGAGCCGCCAA ACATTCCTTTCCGGCTCCGGGAGATTATGAGGAGCCGCCAA < 41bp 1 0.706326402268539 NA NA experiment 0.587347195462921 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79634829 chr17:79634810 nonsynonymous SNV 0.997 5 2 hm7G_associated_SNPs_414 0 0 1 0 2 CCDC137 chr17:79634892 5'GT 79634892 Upstream 83bp 323 chr1 109445764 109445764 1 + G A BRCA 109445759 + 109445739 109445779 41 ACGTTTTAGAATTGGTGAAGGAAGAGCATGTTGGAGCTTAG ACGTTTTAGAATTGGTGAAGGAAGAACATGTTGGAGCTTAG < 41bp 1 0.747398220355541 NA NA experiment 0.505203559288919 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109445759 chr1:109445764 nonsynonymous SNV 0.999 2 26 hm7G_associated_SNPs_416 0 0 1 0 2 GPSM2 chr1:109445748 3'AG 109445748 Downstream 17bp 324 chr1 109445764 109445764 1 + G A BRCA 109445759 + 109445739 109445779 41 ACGTTTTAGAATTGGTGAAGGAAGAGCATGTTGGAGCTTAG ACGTTTTAGAATTGGTGAAGGAAGAACATGTTGGAGCTTAG < 41bp 1 0.747398220355541 NA NA experiment 0.505203559288919 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109445759 chr1:109445764 nonsynonymous SNV 0.999 2 26 hm7G_associated_SNPs_416 0 0 1 0 2 GPSM2 chr1:109445856 5'GT 109445856 Upstream 93bp 325 chr1 220307827 220307827 1 + G T BRCA 220307822 + 220307802 220307842 41 TCAGTCATCCTTATTAACAAGTGTGGCAGCAAGGAAGAGAG TCAGTCATCCTTATTAACAAGTGTGTCAGCAAGGAAGAGAG < 41bp 1 0.725383757111754 NA NA experiment 0.549232485776491 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment IARS2 ENSG00000067704 CDS Human protein_coding chr1:220307822 chr1:220307827 nonsynonymous SNV 0.802 3 26 hm7G_associated_SNPs_417 0 0 1 0 2 IARS2 chr1:220307744 3'AG 220307744 Downstream 84bp 326 chr1 220307827 220307827 1 + G T BRCA 220307822 + 220307802 220307842 41 TCAGTCATCCTTATTAACAAGTGTGGCAGCAAGGAAGAGAG TCAGTCATCCTTATTAACAAGTGTGTCAGCAAGGAAGAGAG < 41bp 1 0.725383757111754 NA NA experiment 0.549232485776491 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment IARS2 ENSG00000067704 CDS Human protein_coding chr1:220307822 chr1:220307827 nonsynonymous SNV 0.802 3 26 hm7G_associated_SNPs_417 0 0 1 0 2 IARS2 chr1:220307852 5'GT 220307852 Upstream 26bp 327 chr1 220307827 220307827 1 + G T BRCA 220307834 + 220307814 220307854 41 ATTAACAAGTGTGGCAGCAAGGAAGAGAGCACCTTATAAGT ATTAACAAGTGTGTCAGCAAGGAAGAGAGCACCTTATAAGT < 41bp 1 0.774293454532822 NA NA experiment 0.451413090934357 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment IARS2 ENSG00000067704 CDS Human protein_coding chr1:220307834 chr1:220307827 nonsynonymous SNV 0.802 3 14 hm7G_associated_SNPs_418 0 0 1 0 2 IARS2 chr1:220307744 3'AG 220307744 Downstream 84bp 328 chr1 220307827 220307827 1 + G T BRCA 220307834 + 220307814 220307854 41 ATTAACAAGTGTGGCAGCAAGGAAGAGAGCACCTTATAAGT ATTAACAAGTGTGTCAGCAAGGAAGAGAGCACCTTATAAGT < 41bp 1 0.774293454532822 NA NA experiment 0.451413090934357 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment IARS2 ENSG00000067704 CDS Human protein_coding chr1:220307834 chr1:220307827 nonsynonymous SNV 0.802 3 14 hm7G_associated_SNPs_418 0 0 1 0 2 IARS2 chr1:220307852 5'GT 220307852 Upstream 26bp 329 chr22 31289855 31289855 1 + G A BRCA 31289836 + 31289816 31289856 41 GTGAGTGACAGCCAGGGCAAGGCCCATTACGTGCTGTCCGG GTGAGTGACAGCCAGGGCAAGGCCCATTACGTGCTGTCCAG < 41bp 1 0.489816552454564 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31289836 chr22:31289855 nonsynonymous SNV 0.980 5 40 hm7G_associated_SNPs_420 0 0 1 0 1 OSBP2 chr22:31289804 3'AG 31289804 Downstream 52bp 330 chr22 31302270 31302270 1 + G A BRCA 31302266 + 31302246 31302286 41 GAGATGGCCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAA GAGATGGCCTGTGTGTACAAGGGCAGCTACTGGGAGGCCAA < 41bp 1 0.718652550545515 NA NA experiment 0.562694898908969 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31302266 chr22:31302270 nonsynonymous SNV 1.000 2 25 hm7G_associated_SNPs_421 0 0 0 0 2 OSBP2 chr22:31302181 3'AG 31302181 Downstream 90bp 331 chr22 31302270 31302270 1 + G A BRCA 31302266 + 31302246 31302286 41 GAGATGGCCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAA GAGATGGCCTGTGTGTACAAGGGCAGCTACTGGGAGGCCAA < 41bp 1 0.718652550545515 NA NA experiment 0.562694898908969 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31302266 chr22:31302270 nonsynonymous SNV 1.000 2 25 hm7G_associated_SNPs_421 0 0 0 0 2 OSBP2 chr22:31302184 3'AG 31302184 Downstream 87bp 332 chr10 75530080 75530080 1 + C T BRCA 75530096 + 75530076 75530116 41 AGTTCGAGCCTCTGAAGAGCGTCTAAGCAATGGGGATATAT AGTTTGAGCCTCTGAAGAGCGTCTAAGCAATGGGGATATAT < 41bp 1 0.67684745380574 NA NA experiment 0.646305092388519 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75530096 chr10:75530080 stopgain 1.000 1 5 hm7G_associated_SNPs_423 0 0 1 0 1 SEC24C chr10:75530038 3'AG 75530038 Downstream 43bp 333 chr19 11129678 11129678 1 + C G BRCA 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCGGTGGTGAA < 41bp 1 0.35815079634014 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129678 synonymous SNV . 0 33 hm7G_associated_SNPs_424 0 0 1 0 2 SMARCA4 chr19:11129633 3'AG 11129633 Downstream 46bp 334 chr19 11129678 11129678 1 + C G BRCA 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCGGTGGTGAA < 41bp 1 0.35815079634014 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129678 synonymous SNV . 0 33 hm7G_associated_SNPs_424 0 0 1 0 2 SMARCA4 chr19:11129699 5'GT 11129699 Upstream 22bp 335 chr11 63965415 63965415 1 + G A BRCA 63965398 + 63965378 63965418 41 GCCATCCATTTCTATAACAAGTCTCTGGCAGAGCACCGAAC GCCATCCATTTCTATAACAAGTCTCTGGCAGAGCACCAAAC < 41bp 1 0.752853561133859 NA NA experiment 0.494292877732282 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965398 chr11:63965415 nonsynonymous SNV 0.998 4 38 hm7G_associated_SNPs_425 0 0 1 0 2 STIP1 chr11:63965326 3'AG 63965326 Downstream 90bp 336 chr11 63965415 63965415 1 + G A BRCA 63965398 + 63965378 63965418 41 GCCATCCATTTCTATAACAAGTCTCTGGCAGAGCACCGAAC GCCATCCATTTCTATAACAAGTCTCTGGCAGAGCACCAAAC < 41bp 1 0.752853561133859 NA NA experiment 0.494292877732282 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965398 chr11:63965415 nonsynonymous SNV 0.998 4 38 hm7G_associated_SNPs_425 0 0 1 0 2 STIP1 chr11:63965446 5'GT 63965446 Upstream 32bp 337 chr5 94027876 94027876 1 + C T CESC 94027883 + 94027863 94027903 41 AGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCCTTTG AGGTAGATCTGCTTACTCAAGTGGACGGGGTGACTCCTTTG < 41bp 1 0.789408649775844 NA NA experiment 0.421182700448312 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SLF1 ENSG00000133302 CDS Human protein_coding chr5:94027883 chr5:94027876 synonymous SNV . 0 14 hm7G_associated_SNPs_426 0 0 1 0 2 SLF1 chr5:94027779 3'AG 94027779 Downstream 98bp 338 chr5 94027876 94027876 1 + C T CESC 94027883 + 94027863 94027903 41 AGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCCTTTG AGGTAGATCTGCTTACTCAAGTGGACGGGGTGACTCCTTTG < 41bp 1 0.789408649775844 NA NA experiment 0.421182700448312 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SLF1 ENSG00000133302 CDS Human protein_coding chr5:94027883 chr5:94027876 synonymous SNV . 0 14 hm7G_associated_SNPs_426 0 0 1 0 2 SLF1 chr5:94027961 5'GT 94027961 Upstream 86bp 339 chr19 47646817 47646817 1 + C T CESC 47646811 + 47646791 47646831 41 CTTGGGGCTGAAATTGCCAAGAATCTCATCTTGGCAGGAGT CTTGGGGCTGAAATTGCCAAGAATCTTATCTTGGCAGGAGT < 41bp 1 0.602133834404019 NA NA experiment 0.795732331191961 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646811 chr19:47646817 synonymous SNV . 0 27 hm7G_associated_SNPs_427 0 0 1 0 2 SAE1 chr19:47646751 3'AG 47646751 Downstream 67bp 340 chr19 47646817 47646817 1 + C T CESC 47646811 + 47646791 47646831 41 CTTGGGGCTGAAATTGCCAAGAATCTCATCTTGGCAGGAGT CTTGGGGCTGAAATTGCCAAGAATCTTATCTTGGCAGGAGT < 41bp 1 0.602133834404019 NA NA experiment 0.795732331191961 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646811 chr19:47646817 synonymous SNV . 0 27 hm7G_associated_SNPs_427 0 0 1 0 2 SAE1 chr19:47646862 5'GT 47646862 Upstream 46bp 341 chr7 74005302 74005302 1 + G A CESC 74005287 + 74005267 74005307 41 AACACGTACGACATCCACCGGCTGGAGAAGATCCTGAAGGC AACACGTACGACATCCACCGGCTGGAGAAGATCCTAAAGGC < 41bp 1 0.552765203757566 NA NA experiment 0.894469592484869 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74005287 chr7:74005302 synonymous SNV . 0 36 hm7G_associated_SNPs_428 0 0 1 0 1 GTF2IRD1 chr7:74005346 5'GT 74005346 Upstream 45bp 342 chr19 50302134 50302134 1 + C G CESC 50302114 + 50302094 50302134 41 CTGGAGACTGTGCTCAACAAGGCCCAGGAGCCCCCCAAATC CTGGAGACTGTGCTCAACAAGGCCCAGGAGCCCCCCAAATG < 41bp 1 0.545772649199901 NA NA experiment 0.908454701600197 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302114 chr19:50302134 nonsynonymous SNV 1.000 4 41 hm7G_associated_SNPs_429 0 0 1 0 2 AP2A1 chr19:50302059 3'AG 50302059 Downstream 76bp 343 chr19 50302134 50302134 1 + C G CESC 50302114 + 50302094 50302134 41 CTGGAGACTGTGCTCAACAAGGCCCAGGAGCCCCCCAAATC CTGGAGACTGTGCTCAACAAGGCCCAGGAGCCCCCCAAATG < 41bp 1 0.545772649199901 NA NA experiment 0.908454701600197 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302114 chr19:50302134 nonsynonymous SNV 1.000 4 41 hm7G_associated_SNPs_429 0 0 1 0 2 AP2A1 chr19:50302209 5'GT 50302209 Upstream 76bp 344 chr19 39219706 39219706 1 + C T CESC 39219705 + 39219685 39219725 41 GCGGCCTTGTGACCTTCCAAGCCTTCATCGACTTCATGTCG GCGGCCTTGTGACCTTCCAAGTCTTCATCGACTTCATGTCG < 41bp 1 0.247372733310548 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219705 chr19:39219706 nonsynonymous SNV 1.000 3 22 hm7G_associated_SNPs_430 0 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 89bp 345 chr5 175923546 175923546 1 + C T CESC 175923543 + 175923523 175923563 41 TGGCCATGATTATGCTGAAGGATCGAAGGATGACTGTGGTG TGGCCATGATTATGCTGAAGGATTGAAGGATGACTGTGGTG < 41bp 1 0.728095900056723 NA NA experiment 0.543808199886555 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175923543 chr5:175923546 stopgain 0.987 1 24 hm7G_associated_SNPs_432 0 0 1 0 1 FAF2 chr5:175923487 3'AG 175923487 Downstream 60bp 346 chr19 54609282 54609282 1 + G A CESC 54609275 + 54609255 54609295 41 CCATTGAGCCCCTACTTCAAGTACTCCGTCATGATCAACAA CCATTGAGCCCCTACTTCAAGTACTCCATCATGATCAACAA < 41bp 1 0.694522393520099 NA NA experiment 0.610955212959802 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609275 chr19:54609282 nonsynonymous SNV 0.000 0 28 hm7G_associated_SNPs_433 0 0 1 0 2 NDUFA3 chr19:54609241 3'AG 54609241 Downstream 42bp 347 chr19 54609282 54609282 1 + G A CESC 54609275 + 54609255 54609295 41 CCATTGAGCCCCTACTTCAAGTACTCCGTCATGATCAACAA CCATTGAGCCCCTACTTCAAGTACTCCATCATGATCAACAA < 41bp 1 0.694522393520099 NA NA experiment 0.610955212959802 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609275 chr19:54609282 nonsynonymous SNV 0.000 0 28 hm7G_associated_SNPs_433 0 0 1 0 2 NDUFA3 chr19:54609318 5'GT 54609318 Upstream 37bp 348 chr7 73105265 73105265 1 + C T CESC 73105282 + 73105262 73105302 41 TGGCTCTGTAATGCTAACAAGAAGTCTGAAAACCCTGCCAA TGGTTCTGTAATGCTAACAAGAAGTCTGAAAACCCTGCCAA < 41bp 1 0.57432268939835 NA NA experiment 0.851354621203301 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control BUD23 ENSG00000071462 CDS Human protein_coding chr7:73105282 chr7:73105265 nonsynonymous SNV 1.000 4 4 hm7G_associated_SNPs_434 0 0 1 0 2 BUD23 chr7:73105246 3'AG 73105246 Downstream 20bp 349 chr7 73105265 73105265 1 + C T CESC 73105282 + 73105262 73105302 41 TGGCTCTGTAATGCTAACAAGAAGTCTGAAAACCCTGCCAA TGGTTCTGTAATGCTAACAAGAAGTCTGAAAACCCTGCCAA < 41bp 1 0.57432268939835 NA NA experiment 0.851354621203301 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control BUD23 ENSG00000071462 CDS Human protein_coding chr7:73105282 chr7:73105265 nonsynonymous SNV 1.000 4 4 hm7G_associated_SNPs_434 0 0 1 0 2 BUD23 chr7:73105342 5'GT 73105342 Upstream 78bp 350 chr12 6646123 6646123 1 + G A CESC 6646107 + 6646087 6646127 41 CGAGATCCCTCCAAAATCAAGTGGGGCGATGCTGGCGCTGA CGAGATCCCTCCAAAATCAAGTGGGGCGATGCTGGCACTGA < 41bp 1 0.796998896050477 NA NA experiment 0.406002207899046 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646107 chr12:6646123 nonsynonymous SNV 0.524 1 37 hm7G_associated_SNPs_435 0 0 1 0 2 GAPDH chr12:6646086 3'AG 6646086 Downstream 38bp 351 chr12 6646123 6646123 1 + G A CESC 6646107 + 6646087 6646127 41 CGAGATCCCTCCAAAATCAAGTGGGGCGATGCTGGCGCTGA CGAGATCCCTCCAAAATCAAGTGGGGCGATGCTGGCACTGA < 41bp 1 0.796998896050477 NA NA experiment 0.406002207899046 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646107 chr12:6646123 nonsynonymous SNV 0.524 1 37 hm7G_associated_SNPs_435 0 0 1 0 2 GAPDH chr12:6646176 5'GT 6646176 Upstream 54bp 352 chr20 54972865 54972865 1 + C T CESC 54972853 + 54972833 54972873 41 ATTATACTCTTAAATTATTTGATTATTCCAAACCATCAGCA ATTATACTCTTAAATTATTTGATTATTCCAAATCATCAGCA < 41bp 1 0.79038060391502 NA NA experiment 0.419238792169961 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54972853 chr20:54972865 nonsynonymous SNV 0.994 1 33 hm7G_associated_SNPs_436 0 0 1 0 1 CSTF1 chr20:54972897 5'GT 54972897 Upstream 33bp 353 chr2 73474937 73474937 1 + C T CESC 73474922 + 73474902 73474942 41 GTAGCTGGTGTTGCATTCAAGAAGACTTTCTCTTACGCTGG GTAGCTGGTGTTGCATTCAAGAAGACTTTCTCTTATGCTGG < 41bp 1 0.56151526299988 NA NA experiment 0.876969474000239 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CCT7 ENSG00000135624 CDS Human protein_coding chr2:73474922 chr2:73474937 synonymous SNV . 0 36 hm7G_associated_SNPs_437 0 0 1 0 1 CCT7 chr2:73474890 3'AG 73474890 Downstream 48bp 354 chr7 127721503 127721503 1 + T G CESC 127721492 + 127721472 127721512 41 GAGCGATCTGCTAGCTACAAGCCCGTGTTTGTGACTGAGAT GAGCGATCTGCTAGCTACAAGCCCGTGTTTGGGACTGAGAT < 41bp 1 0.476979786006867 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127721492 chr7:127721503 nonsynonymous SNV 0.971 4 32 hm7G_associated_SNPs_438 0 0 1 0 2 SND1 chr7:127721412 3'AG 127721412 Downstream 92bp 355 chr7 127721503 127721503 1 + T G CESC 127721492 + 127721472 127721512 41 GAGCGATCTGCTAGCTACAAGCCCGTGTTTGTGACTGAGAT GAGCGATCTGCTAGCTACAAGCCCGTGTTTGGGACTGAGAT < 41bp 1 0.476979786006867 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127721492 chr7:127721503 nonsynonymous SNV 0.971 4 32 hm7G_associated_SNPs_438 0 0 1 0 2 SND1 chr7:127721553 5'GT 127721553 Upstream 51bp 356 chr14 105169679 105169679 1 + C A CESC 105169684 + 105169664 105169704 41 TGTCATGAACGAGCTCTCCGGCAGCGACAACGTGCCCTACG TGTCATGAACGAGCTATCCGGCAGCGACAACGTGCCCTACG < 41bp 1 0.333205377423577 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105169684 chr14:105169679 synonymous SNV . 0 16 hm7G_associated_SNPs_439 0 0 1 0 1 INF2 chr14:105169632 3'AG 105169632 Downstream 48bp 357 chr1 156028130 156028130 1 + G A CESC 156028148 + 156028128 156028168 41 TGGAGGAGCCCCTCACCCAAGTGGCGGCATCTTAACGGCAT TGAAGGAGCCCCTCACCCAAGTGGCGGCATCTTAACGGCAT < 41bp 1 0.702392070042776 NA NA experiment 0.595215859914448 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156028148 chr1:156028130 nonsynonymous SNV 0.999 0 3 hm7G_associated_SNPs_442 0 0 1 0 1 LAMTOR2 chr1:156028106 3'AG 156028106 Downstream 25bp 358 chr1 116929996 116929996 1 + C T CESC 116929999 + 116929979 116930019 41 ACTACTCCTGAATGGATCAAGTTTTGTCGGCAGCTCTTTGG ACTACTCCTGAATGGATTAAGTTTTGTCGGCAGCTCTTTGG < 41bp 1 0.498112330587997 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116929999 chr1:116929996 synonymous SNV . 0 18 hm7G_associated_SNPs_443 0 0 1 0 1 ATP1A1 chr1:116929910 3'AG 116929910 Downstream 87bp 359 chr5 154330430 154330430 1 + C T CESC 154330410 + 154330390 154330430 41 TCAATCATATATCCACACAAGTGCTTCTCTTGACATTTCTC TCAATCATATATCCACACAAGTGCTTCTCTTGACATTTCTT < 41bp 1 0.313909961378066 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330410 chr5:154330430 stopgain 0.997 0 41 hm7G_associated_SNPs_446 0 0 1 0 1 MRPL22 chr5:154330498 5'GT 154330498 Upstream 69bp 360 chr17 8192310 8192310 1 + C T CESC 8192302 + 8192282 8192322 41 GACCGGTCCCGGACAATCAAGAAGTTTTCTGCCATCCCGTG GACCGGTCCCGGACAATCAAGAAGTTTTTTGCCATCCCGTG < 41bp 1 0.544667854261329 NA NA experiment 0.910664291477341 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192302 chr17:8192310 synonymous SNV . 0 29 hm7G_associated_SNPs_447 0 0 1 0 2 RANGRF chr17:8192274 3'AG 8192274 Downstream 37bp 361 chr17 8192310 8192310 1 + C T CESC 8192302 + 8192282 8192322 41 GACCGGTCCCGGACAATCAAGAAGTTTTCTGCCATCCCGTG GACCGGTCCCGGACAATCAAGAAGTTTTTTGCCATCCCGTG < 41bp 1 0.544667854261329 NA NA experiment 0.910664291477341 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192302 chr17:8192310 synonymous SNV . 0 29 hm7G_associated_SNPs_447 0 0 1 0 2 RANGRF chr17:8192390 5'GT 8192390 Upstream 81bp 362 chr16 712707 712707 1 + C T CESC 712710 + 712690 712730 41 TGGAACACGAGCTGGTGCTGGACGGGGCTGTGGTGAGTGCC TGGAACACGAGCTGGTGTTGGACGGGGCTGTGGTGAGTGCC < 41bp 1 0.333951615243362 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712710 chr16:712707 synonymous SNV . 0 18 hm7G_associated_SNPs_448 0 0 1 0 2 WDR90 chr16:712673 3'AG 712673 Downstream 35bp 363 chr16 712707 712707 1 + C T CESC 712710 + 712690 712730 41 TGGAACACGAGCTGGTGCTGGACGGGGCTGTGGTGAGTGCC TGGAACACGAGCTGGTGTTGGACGGGGCTGTGGTGAGTGCC < 41bp 1 0.333951615243362 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712710 chr16:712707 synonymous SNV . 0 18 hm7G_associated_SNPs_448 0 0 1 0 2 WDR90 chr16:712679 3'AG 712679 Downstream 29bp 364 chr22 44359204 44359204 1 + A G CESC 44359188 + 44359168 44359208 41 TTTGGAGCCTCTTCCATCAAGTGGACCTGATTTTGGAGGAT TTTGGAGCCTCTTCCATCAAGTGGACCTGATTTTGGGGGAT < 41bp 1 0.405234913093965 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44359188 chr22:44359204 synonymous SNV . 0 37 hm7G_associated_SNPs_449 0 0 1 0 1 SAMM50 chr22:44359276 5'GT 44359276 Upstream 73bp 365 chr19 39219710 39219710 1 + C T CESC 39219705 + 39219685 39219725 41 GCGGCCTTGTGACCTTCCAAGCCTTCATCGACTTCATGTCG GCGGCCTTGTGACCTTCCAAGCCTTTATCGACTTCATGTCG < 41bp 1 0.337838175794481 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219705 chr19:39219710 synonymous SNV . 0 26 hm7G_associated_SNPs_450 0 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 85bp 366 chr19 11129654 11129654 1 + C A CESC 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGGCGTAAGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA < 41bp 1 0.2920099203284 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129654 stopgain 0.916 1 9 hm7G_associated_SNPs_451 0 0 1 0 2 SMARCA4 chr19:11129633 3'AG 11129633 Downstream 22bp 367 chr19 11129654 11129654 1 + C A CESC 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGGCGTAAGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA < 41bp 1 0.2920099203284 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129654 stopgain 0.916 1 9 hm7G_associated_SNPs_451 0 0 1 0 2 SMARCA4 chr19:11129699 5'GT 11129699 Upstream 46bp 368 chr19 39219713 39219713 1 + C T CESC 39219705 + 39219685 39219725 41 GCGGCCTTGTGACCTTCCAAGCCTTCATCGACTTCATGTCG GCGGCCTTGTGACCTTCCAAGCCTTCATTGACTTCATGTCG < 41bp 1 0.367392570672347 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219705 chr19:39219713 synonymous SNV . 0 29 hm7G_associated_SNPs_452 0 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 82bp 369 chr1 201843430 201843430 1 + C T CESC 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TTATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT < 41bp 1 0.437622689051314 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843430 synonymous SNV . 0 2 hm7G_associated_SNPs_453 0 0 1 0 2 IPO9 chr1:201843378 3'AG 201843378 Downstream 53bp 370 chr1 201843430 201843430 1 + C T CESC 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TTATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT < 41bp 1 0.437622689051314 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843430 synonymous SNV . 0 2 hm7G_associated_SNPs_453 0 0 1 0 2 IPO9 chr1:201843500 5'GT 201843500 Upstream 71bp 371 chr19 56172526 56172526 1 + G A CESC 56172511 + 56172491 56172531 41 GGAGCCAGATGACCAGACAAGCCCGGCGCCTCTACGTGGGC GGAGCCAGATGACCAGACAAGCCCGGCGCCTCTACATGGGC < 41bp 1 0.561002998409347 NA NA experiment 0.877994003181306 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172511 chr19:56172526 nonsynonymous SNV 1.000 3 36 hm7G_associated_SNPs_454 0 0 1 0 1 U2AF2 chr19:56172555 5'GT 56172555 Upstream 30bp 372 chr1 32497157 32497157 1 + A G CESC 32497158 + 32497138 32497178 41 GGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTG GGAAGATTCTTGGACCACAGGGGAATACAATCAAAAGACTG < 41bp 1 0.491693193206072 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32497158 chr1:32497157 synonymous SNV . 0 20 hm7G_associated_SNPs_455 0 0 1 0 2 KHDRBS1 chr1:32497125 3'AG 32497125 Downstream 33bp 373 chr1 32497157 32497157 1 + A G CESC 32497158 + 32497138 32497178 41 GGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTG GGAAGATTCTTGGACCACAGGGGAATACAATCAAAAGACTG < 41bp 1 0.491693193206072 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32497158 chr1:32497157 synonymous SNV . 0 20 hm7G_associated_SNPs_455 0 0 1 0 2 KHDRBS1 chr1:32497241 5'GT 32497241 Upstream 85bp 374 chr20 62660803 62660803 1 + G C CESC 62660785 + 62660765 62660805 41 AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAA AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAACAA < 41bp 1 0.748581935978817 NA NA experiment 0.502836128042366 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62660785 chr20:62660803 nonsynonymous SNV 1.000 1 39 hm7G_associated_SNPs_457 0 0 1 0 2 PRPF6 chr20:62660730 3'AG 62660730 Downstream 74bp 375 chr20 62660803 62660803 1 + G C CESC 62660785 + 62660765 62660805 41 AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAA AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAACAA < 41bp 1 0.748581935978817 NA NA experiment 0.502836128042366 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62660785 chr20:62660803 nonsynonymous SNV 1.000 1 39 hm7G_associated_SNPs_457 0 0 1 0 2 PRPF6 chr20:62660844 5'GT 62660844 Upstream 42bp 376 chrX 47084097 47084097 1 + C T CESC 47084109 + 47084089 47084129 41 AATAGCCCCATCTTTGACAAGCCCCTCAGCCGCCGCCTCCG AATAGCCCTATCTTTGACAAGCCCCTCAGCCGCCGCCTCCG < 41bp 1 0.674450067744251 NA NA experiment 0.651099864511498 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CDK16 ENSG00000102225 CDS Human protein_coding chrX:47084109 chrX:47084097 synonymous SNV . 0 9 hm7G_associated_SNPs_458 0 0 1 0 2 CDK16 chrX:47084017 3'AG 47084017 Downstream 81bp 377 chrX 47084097 47084097 1 + C T CESC 47084109 + 47084089 47084129 41 AATAGCCCCATCTTTGACAAGCCCCTCAGCCGCCGCCTCCG AATAGCCCTATCTTTGACAAGCCCCTCAGCCGCCGCCTCCG < 41bp 1 0.674450067744251 NA NA experiment 0.651099864511498 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CDK16 ENSG00000102225 CDS Human protein_coding chrX:47084109 chrX:47084097 synonymous SNV . 0 9 hm7G_associated_SNPs_458 0 0 1 0 2 CDK16 chrX:47084142 5'GT 47084142 Upstream 46bp 378 chr7 74005296 74005296 1 + G T CESC 74005287 + 74005267 74005307 41 AACACGTACGACATCCACCGGCTGGAGAAGATCCTGAAGGC AACACGTACGACATCCACCGGCTGGAGAATATCCTGAAGGC < 41bp 1 0.553867778743576 NA NA experiment 0.892264442512848 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74005287 chr7:74005296 nonsynonymous SNV 1.000 3 30 hm7G_associated_SNPs_459 0 0 1 0 1 GTF2IRD1 chr7:74005346 5'GT 74005346 Upstream 51bp 379 chr17 900554 900554 1 + G A CESC 900537 + 900517 900557 41 GAGCCTGGGCGGGATCCCAAGTCCAGCCAAGAGTGAGGAGC GAGCCTGGGCGGGATCCCAAGTCCAGCCAAGAGTGAGAAGC < 41bp 1 0.780874105853716 NA NA experiment 0.438251788292567 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment TIMM22 ENSG00000177370 CDS Human protein_coding chr17:900537 chr17:900554 nonsynonymous SNV 1.000 2 38 hm7G_associated_SNPs_460 0 0 1 0 1 TIMM22 chr17:900620 5'GT 900620 Upstream 67bp 380 chr19 11106940 11106940 1 + C T CESC 11106939 + 11106919 11106959 41 ATCGACCAGAAGAAGGACAAGCGCCTGGCCTACCTCTTGCA ATCGACCAGAAGAAGGACAAGTGCCTGGCCTACCTCTTGCA < 41bp 1 0.375944708844516 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11106939 chr19:11106940 nonsynonymous SNV 1.000 4 22 hm7G_associated_SNPs_461 0 0 1 0 1 SMARCA4 chr19:11106889 3'AG 11106889 Downstream 52bp 381 chr10 75530081 75530081 1 + G A CESC 75530096 + 75530076 75530116 41 AGTTCGAGCCTCTGAAGAGCGTCTAAGCAATGGGGATATAT AGTTCAAGCCTCTGAAGAGCGTCTAAGCAATGGGGATATAT < 41bp 1 0.650333244558688 NA NA experiment 0.699333510882625 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75530096 chr10:75530081 nonsynonymous SNV 1.000 4 6 hm7G_associated_SNPs_462 0 0 1 0 1 SEC24C chr10:75530038 3'AG 75530038 Downstream 44bp 382 chr19 39219695 39219695 1 + G A CESC 39219705 + 39219685 39219725 41 GCGGCCTTGTGACCTTCCAAGCCTTCATCGACTTCATGTCG GCGGCCTTGTAACCTTCCAAGCCTTCATCGACTTCATGTCG < 41bp 1 0.327211638769594 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219705 chr19:39219695 synonymous SNV . 0 11 hm7G_associated_SNPs_463 0 0 0 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 100bp 383 chr12 131359155 131359155 1 + G A CESC 131359140 + 131359120 131359160 41 ACATCGAGAGTTACTTACAAGAATGTGCCTAACTGGCATAG ACATCGAGAGTTACTTACAAGAATGTGCCTAACTGACATAG < 41bp 1 0.789438781814639 NA NA experiment 0.421122436370723 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control RAN ENSG00000132341 CDS Human protein_coding chr12:131359140 chr12:131359155 stopgain 1.000 1 36 hm7G_associated_SNPs_464 0 0 1 0 1 RAN chr12:131359091 3'AG 131359091 Downstream 65bp 384 chr12 57626004 57626004 1 + G A COAD 57626024 + 57626004 57626044 41 GGCTACATGTCTGACGTCAAGCGGATATCAGCCACGTCCAT AGCTACATGTCTGACGTCAAGCGGATATCAGCCACGTCCAT < 41bp 1 0.752108757404018 NA NA experiment 0.495782485191964 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626024 chr12:57626004 nonsynonymous SNV 0.990 4 1 hm7G_associated_SNPs_465 0 0 1 0 2 SHMT2 chr12:57625994 3'AG 57625994 Downstream 11bp 385 chr12 57626004 57626004 1 + G A COAD 57626024 + 57626004 57626044 41 GGCTACATGTCTGACGTCAAGCGGATATCAGCCACGTCCAT AGCTACATGTCTGACGTCAAGCGGATATCAGCCACGTCCAT < 41bp 1 0.752108757404018 NA NA experiment 0.495782485191964 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626024 chr12:57626004 nonsynonymous SNV 0.990 4 1 hm7G_associated_SNPs_465 0 0 1 0 2 SHMT2 chr12:57626075 5'GT 57626075 Upstream 72bp 386 chr7 149575815 149575815 1 + G T COAD 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCATCTGAAGAA < 41bp 1 0.686750468401513 NA NA experiment 0.626499063196974 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575815 nonsynonymous SNV 0.996 1 33 hm7G_associated_SNPs_466 0 0 1 0 3 ATP6V0E2 chr7:149575767 3'AG 149575767 Downstream 49bp 387 chr7 149575815 149575815 1 + G T COAD 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCATCTGAAGAA < 41bp 1 0.686750468401513 NA NA experiment 0.626499063196974 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575815 nonsynonymous SNV 0.996 1 33 hm7G_associated_SNPs_466 0 0 1 0 3 ATP6V0E2 chr7:149575835 5'GT 149575835 Upstream 21bp 388 chr7 149575815 149575815 1 + G T COAD 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCATCTGAAGAA < 41bp 1 0.686750468401513 NA NA experiment 0.626499063196974 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human antisense chr7:149575803 chr7:149575815 nonsynonymous SNV 0.996 1 33 hm7G_associated_SNPs_466 0 0 1 0 3 ATP6V0E2 chr7:149575879 5'GT 149575879 Upstream 65bp 389 chr5 170814959 170814959 1 + G T COAD 170814974 + 170814954 170814994 41 TGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCC TGGAATATTCGATGGACATGGACATGAGCCCCCTGAGGCCC < 41bp 1 0.63556298908485 NA NA experiment 0.7288740218303 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NPM1 ENSG00000181163 CDS Human protein_coding chr5:170814974 chr5:170814959 nonsynonymous SNV 0.999 3 6 hm7G_associated_SNPs_467 0 0 1 0 1 NPM1 chr5:170815010 5'GT 170815010 Upstream 52bp 390 chr5 177636358 177636358 1 + G T COAD 177636342 + 177636322 177636362 41 GACTTTTAGTGTGAGATCAAGGTGGCCCAGCCCAAAGAAGT GACTTTTAGTGTGAGATCAAGGTGGCCCAGCCCAAATAAGT < 41bp 1 0.797876827070832 NA NA experiment 0.404246345858337 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment HNRNPAB ENSG00000197451 CDS Human protein_coding chr5:177636342 chr5:177636358 stopgain 0.999 1 37 hm7G_associated_SNPs_469 0 0 1 0 1 HNRNPAB chr5:177636448 5'GT 177636448 Upstream 91bp 391 chr15 45008529 45008529 1 + C T COAD 45008526 + 45008506 45008546 41 TCTCCACTGTCTTTTTCATAGATCGAGACATGTAAGCAGCA TCTCCACTGTCTTTTTCATAGATTGAGACATGTAAGCAGCA < 41bp 1 0.59045763847631 NA NA experiment 0.819084723047379 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control B2M ENSG00000166710 CDS Human protein_coding chr15:45008526 chr15:45008529 stopgain 0.061 0 24 hm7G_associated_SNPs_471 0 0 1 0 1 B2M chr15:45008527 3'AG 45008527 Downstream 3bp 392 chr7 2416659 2416659 1 + G C COAD 2416644 + 2416624 2416664 41 CTCCTGCAGAAGAACAACAAGGACCGCTTCTGCCAGCTGCT CTCCTGCAGAAGAACAACAAGGACCGCTTCTGCCACCTGCT < 41bp 1 0.776702274583409 NA NA experiment 0.446595450833181 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2416644 chr7:2416659 nonsynonymous SNV 1.000 2 36 hm7G_associated_SNPs_473 0 0 1 0 2 EIF3B chr7:2416585 3'AG 2416585 Downstream 75bp 393 chr7 2416659 2416659 1 + G C COAD 2416644 + 2416624 2416664 41 CTCCTGCAGAAGAACAACAAGGACCGCTTCTGCCAGCTGCT CTCCTGCAGAAGAACAACAAGGACCGCTTCTGCCACCTGCT < 41bp 1 0.776702274583409 NA NA experiment 0.446595450833181 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2416644 chr7:2416659 nonsynonymous SNV 1.000 2 36 hm7G_associated_SNPs_473 0 0 1 0 2 EIF3B chr7:2416710 5'GT 2416710 Upstream 52bp 394 chr12 1346029 1346029 1 + C T COAD 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGCGCGATGACGGGAGGACAATCTCA < 41bp 1 0.67209133917586 NA NA experiment 0.65581732164828 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346029 stopgain 0.237 1 23 hm7G_associated_SNPs_474 0 0 1 0 2 ERC1 chr12:1345935 3'AG 1345935 Downstream 95bp 395 chr12 1346029 1346029 1 + C T COAD 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGCGCGATGACGGGAGGACAATCTCA < 41bp 1 0.67209133917586 NA NA experiment 0.65581732164828 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346029 stopgain 0.237 1 23 hm7G_associated_SNPs_474 0 0 1 0 2 ERC1 chr12:1346070 5'GT 1346070 Upstream 42bp 396 chr7 74005273 74005273 1 + T C COAD 74005287 + 74005267 74005307 41 AACACGTACGACATCCACCGGCTGGAGAAGATCCTGAAGGC AACACGCACGACATCCACCGGCTGGAGAAGATCCTGAAGGC < 41bp 1 0.610719970694408 NA NA experiment 0.778560058611184 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74005287 chr7:74005273 nonsynonymous SNV 0.127 4 7 hm7G_associated_SNPs_475 0 0 1 0 1 GTF2IRD1 chr7:74005346 5'GT 74005346 Upstream 74bp 397 chr16 28994545 28994545 1 + C T COAD 28994535 + 28994515 28994555 41 CGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCC CGTGGTGATCCCTACCCGACGCTCCACCGCTGAGGCCTTCC < 41bp 1 0.754208755142112 NA NA experiment 0.491582489715777 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994535 chr16:28994545 synonymous SNV . 0 31 hm7G_associated_SNPs_476 0 0 1 0 2 SPNS1 chr16:28994513 3'AG 28994513 Downstream 33bp 398 chr16 28994545 28994545 1 + C T COAD 28994535 + 28994515 28994555 41 CGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCC CGTGGTGATCCCTACCCGACGCTCCACCGCTGAGGCCTTCC < 41bp 1 0.754208755142112 NA NA experiment 0.491582489715777 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994535 chr16:28994545 synonymous SNV . 0 31 hm7G_associated_SNPs_476 0 0 1 0 2 SPNS1 chr16:28994611 5'GT 28994611 Upstream 67bp 399 chr3 4712493 4712493 1 + A G COAD 4712483 + 4712463 4712503 41 ATGCTCTGGAGGCAGGAGAAGACGAGGAAGAGGTGTGGCTG ATGCTCTGGAGGCAGGAGAAGACGAGGAAGGGGTGTGGCTG < 41bp 1 0.592290819216575 NA NA experiment 0.81541836156685 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4712483 chr3:4712493 nonsynonymous SNV 0.978 5 31 hm7G_associated_SNPs_477 0 0 1 0 1 ITPR1 chr3:4712413 3'AG 4712413 Downstream 81bp 400 chr15 45008538 45008538 1 + T C COAD 45008526 + 45008506 45008546 41 TCTCCACTGTCTTTTTCATAGATCGAGACATGTAAGCAGCA TCTCCACTGTCTTTTTCATAGATCGAGACATGCAAGCAGCA < 41bp 1 0.634381114141298 NA NA experiment 0.731237771717403 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control B2M ENSG00000166710 CDS Human protein_coding chr15:45008526 chr15:45008538 stoploss 0.008 0 33 hm7G_associated_SNPs_478 0 0 1 0 1 B2M chr15:45008527 3'AG 45008527 Downstream 12bp 401 chr9 36199024 36199024 1 + C T COAD 36199018 + 36198998 36199038 41 GTTATGCAGCTATTTCACAAGTGGATCGATTGCAGTCAGAG GTTATGCAGCTATTTCACAAGTGGATTGATTGCAGTCAGAG < 41bp 1 0.680911722698054 NA NA experiment 0.638176554603892 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CLTA ENSG00000122705 CDS Human protein_coding chr9:36199018 chr9:36199024 stopgain 1.000 1 27 hm7G_associated_SNPs_479 0 0 1 1 2 CLTA chr9:36198976 3'AG 36198976 Downstream 49bp 402 chr9 36199024 36199024 1 + C T COAD 36199018 + 36198998 36199038 41 GTTATGCAGCTATTTCACAAGTGGATCGATTGCAGTCAGAG GTTATGCAGCTATTTCACAAGTGGATTGATTGCAGTCAGAG < 41bp 1 0.680911722698054 NA NA experiment 0.638176554603892 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CLTA ENSG00000122705 CDS Human protein_coding chr9:36199018 chr9:36199024 stopgain 1.000 1 27 hm7G_associated_SNPs_479 0 0 1 1 2 CLTA chr9:36199093 5'GT 36199093 Upstream 70bp 403 chr9 131388869 131388869 1 + G A COAD 131388873 + 131388853 131388893 41 CTGGCCGAGCTGGACCGCCAGATCAAGAGCTTCCGCGTAGC CTGGCCGAGCTGGACCACCAGATCAAGAGCTTCCGCGTAGC < 41bp 1 0.568071469087908 NA NA experiment 0.863857061824183 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131388873 chr9:131388869 nonsynonymous SNV 1.000 0 17 hm7G_associated_SNPs_481 0 0 1 0 1 SPTAN1 chr9:131388966 5'GT 131388966 Upstream 98bp 404 chr19 50270425 50270425 1 + G A COAD 50270408 + 50270388 50270428 41 ATCATGCCGGCCGTGTCCAAGGGCGATGGGATGCGGGGGCT ATCATGCCGGCCGTGTCCAAGGGCGATGGGATGCGGGAGCT < 41bp 1 0.78646521284459 NA NA experiment 0.42706957431082 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50270408 chr19:50270425 nonsynonymous SNV 0.994 2 38 hm7G_associated_SNPs_482 0 0 1 0 1 AP2A1 chr19:50270457 5'GT 50270457 Upstream 33bp 405 chr19 56206567 56206567 1 + G A COAD 56206572 + 56206552 56206592 41 CAGCCCGCGCCTCCCGCGACGCTCACCCTGAACCAGCTCCG CAGCCCGCGCCTCCCACGACGCTCACCCTGAACCAGCTCCG < 41bp 1 0.503559850284863 NA NA experiment 0.992880299430273 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206572 chr19:56206567 nonsynonymous SNV 0.278 1 16 hm7G_associated_SNPs_484 0 0 1 0 1 EPN1 chr19:56206514 3'AG 56206514 Downstream 54bp 406 chr9 36199025 36199025 1 + G A COAD 36199018 + 36198998 36199038 41 GTTATGCAGCTATTTCACAAGTGGATCGATTGCAGTCAGAG GTTATGCAGCTATTTCACAAGTGGATCAATTGCAGTCAGAG < 41bp 1 0.655269130942466 NA NA experiment 0.689461738115069 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CLTA ENSG00000122705 CDS Human protein_coding chr9:36199018 chr9:36199025 nonsynonymous SNV 1.000 1 28 hm7G_associated_SNPs_485 0 0 1 1 2 CLTA chr9:36198976 3'AG 36198976 Downstream 50bp 407 chr9 36199025 36199025 1 + G A COAD 36199018 + 36198998 36199038 41 GTTATGCAGCTATTTCACAAGTGGATCGATTGCAGTCAGAG GTTATGCAGCTATTTCACAAGTGGATCAATTGCAGTCAGAG < 41bp 1 0.655269130942466 NA NA experiment 0.689461738115069 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CLTA ENSG00000122705 CDS Human protein_coding chr9:36199018 chr9:36199025 nonsynonymous SNV 1.000 1 28 hm7G_associated_SNPs_485 0 0 1 1 2 CLTA chr9:36199093 5'GT 36199093 Upstream 69bp 408 chr10 79795341 79795341 1 + T A COAD 79795346 + 79795326 79795366 41 AAACTAGCCAAAATGTACAAGACCACACCGGATGTCATCTT AAACTAGCCAAAATGAACAAGACCACACCGGATGTCATCTT < 41bp 1 0.750292840271556 NA NA experiment 0.499414319456888 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPS24 ENSG00000138326 CDS Human protein_coding chr10:79795346 chr10:79795341 nonsynonymous SNV 1.000 4 16 hm7G_associated_SNPs_486 0 0 1 0 1 RPS24 chr10:79795269 3'AG 79795269 Downstream 73bp 409 chr19 39219724 39219724 1 + C T COAD 39219705 + 39219685 39219725 41 GCGGCCTTGTGACCTTCCAAGCCTTCATCGACTTCATGTCG GCGGCCTTGTGACCTTCCAAGCCTTCATCGACTTCATGTTG < 41bp 1 0.334560989112814 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39219705 chr19:39219724 nonsynonymous SNV 0.983 3 40 hm7G_associated_SNPs_487 0 0 1 0 1 ACTN4 chr19:39219794 5'GT 39219794 Upstream 71bp 410 chr11 64127720 64127720 1 + G A COAD 64127738 + 64127718 64127758 41 GCGCTGGTGCAGCGCGCCAAGACGCAAGAGCACACGCGCAC GCACTGGTGCAGCGCGCCAAGACGCAAGAGCACACGCGCAC < 41bp 1 0.74080422931741 NA NA experiment 0.51839154136518 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64127738 chr11:64127720 synonymous SNV . 0 3 hm7G_associated_SNPs_489 0 0 1 0 1 RPS6KA4 chr11:64127635 3'AG 64127635 Downstream 86bp 411 chr7 2416637 2416637 1 + A G COAD 2416644 + 2416624 2416664 41 CTCCTGCAGAAGAACAACAAGGACCGCTTCTGCCAGCTGCT CTCCTGCAGAAGAGCAACAAGGACCGCTTCTGCCAGCTGCT < 41bp 1 0.769250883060879 NA NA experiment 0.461498233878243 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2416644 chr7:2416637 nonsynonymous SNV 0.997 1 14 hm7G_associated_SNPs_490 0 0 1 0 2 EIF3B chr7:2416585 3'AG 2416585 Downstream 53bp 412 chr7 2416637 2416637 1 + A G COAD 2416644 + 2416624 2416664 41 CTCCTGCAGAAGAACAACAAGGACCGCTTCTGCCAGCTGCT CTCCTGCAGAAGAGCAACAAGGACCGCTTCTGCCAGCTGCT < 41bp 1 0.769250883060879 NA NA experiment 0.461498233878243 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control EIF3B ENSG00000106263 CDS Human protein_coding chr7:2416644 chr7:2416637 nonsynonymous SNV 0.997 1 14 hm7G_associated_SNPs_490 0 0 1 0 2 EIF3B chr7:2416710 5'GT 2416710 Upstream 74bp 413 chr19 54631479 54631479 1 + G A COAD 54631492 + 54631472 54631512 41 ATCGAGCGCAAATTCGACAAGTGGCAGGAGCCGCCGCCTGT ATCGAGCACAAATTCGACAAGTGGCAGGAGCCGCCGCCTGT < 41bp 1 0.79088883168769 NA NA experiment 0.41822233662462 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631492 chr19:54631479 nonsynonymous SNV 0.990 2 8 hm7G_associated_SNPs_491 0 0 1 0 2 PRPF31 chr19:54631448 3'AG 54631448 Downstream 32bp 414 chr19 54631479 54631479 1 + G A COAD 54631492 + 54631472 54631512 41 ATCGAGCGCAAATTCGACAAGTGGCAGGAGCCGCCGCCTGT ATCGAGCACAAATTCGACAAGTGGCAGGAGCCGCCGCCTGT < 41bp 1 0.79088883168769 NA NA experiment 0.41822233662462 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54631492 chr19:54631479 nonsynonymous SNV 0.990 2 8 hm7G_associated_SNPs_491 0 0 1 0 2 PRPF31 chr19:54631575 5'GT 54631575 Upstream 97bp 415 chr12 6973264 6973264 1 + A C COAD 6973265 + 6973245 6973285 41 TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCTC TAGTGGGCCGGGCTCCACACGCGCAGCAGCCGACCCCCCTC < 41bp 1 0.708285206737013 NA NA experiment 0.583429586525975 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment USP5 ENSG00000111667 CDS Human protein_coding chr12:6973265 chr12:6973264 nonsynonymous SNV 0.575 1 20 hm7G_associated_SNPs_492 0 0 1 0 2 USP5 chr12:6973214 3'AG 6973214 Downstream 51bp 416 chr12 6973264 6973264 1 + A C COAD 6973265 + 6973245 6973285 41 TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCTC TAGTGGGCCGGGCTCCACACGCGCAGCAGCCGACCCCCCTC < 41bp 1 0.708285206737013 NA NA experiment 0.583429586525975 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment USP5 ENSG00000111667 CDS Human protein_coding chr12:6973265 chr12:6973264 nonsynonymous SNV 0.575 1 20 hm7G_associated_SNPs_492 0 0 1 0 2 USP5 chr12:6973359 5'GT 6973359 Upstream 96bp 417 chr3 4712501 4712501 1 + C T COAD 4712483 + 4712463 4712503 41 ATGCTCTGGAGGCAGGAGAAGACGAGGAAGAGGTGTGGCTG ATGCTCTGGAGGCAGGAGAAGACGAGGAAGAGGTGTGGTTG < 41bp 1 0.547194405535301 NA NA experiment 0.905611188929398 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4712483 chr3:4712501 synonymous SNV . 0 39 hm7G_associated_SNPs_493 0 0 1 0 1 ITPR1 chr3:4712413 3'AG 4712413 Downstream 89bp 418 chr12 53427775 53427775 1 + C T COAD 53427763 + 53427743 53427783 41 AACGGCTACAGAAGGAACAAGAGAAGTTGCAGCGTCAGCTG AACGGCTACAGAAGGAACAAGAGAAGTTGCAGTGTCAGCTG < 41bp 1 0.796132744413962 NA NA experiment 0.407734511172076 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control EIF4B ENSG00000063046 CDS Human protein_coding chr12:53427763 chr12:53427775 nonsynonymous SNV 0.994 2 33 hm7G_associated_SNPs_494 0 0 1 0 1 EIF4B chr12:53427818 5'GT 53427818 Upstream 44bp 419 chr19 1978445 1978445 1 + C T COAD 1978452 + 1978432 1978472 41 TGCCCCCAGGAGCCGATCAAGTCCCGGGCCCCGCAGCTGCA TGCCCCCAGGAGCTGATCAAGTCCCGGGCCCCGCAGCTGCA < 41bp 1 0.695391205983345 NA NA experiment 0.609217588033311 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978452 chr19:1978445 nonsynonymous SNV 0.966 2 14 hm7G_associated_SNPs_495 0 0 1 0 2 CSNK1G2 chr19:1978441 3'AG 1978441 Downstream 5bp 420 chr19 1978445 1978445 1 + C T COAD 1978452 + 1978432 1978472 41 TGCCCCCAGGAGCCGATCAAGTCCCGGGCCCCGCAGCTGCA TGCCCCCAGGAGCTGATCAAGTCCCGGGCCCCGCAGCTGCA < 41bp 1 0.695391205983345 NA NA experiment 0.609217588033311 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978452 chr19:1978445 nonsynonymous SNV 0.966 2 14 hm7G_associated_SNPs_495 0 0 1 0 2 CSNK1G2 chr19:1978510 5'GT 1978510 Upstream 66bp 421 chr17 26671489 26671489 1 + C T COAD 26671473 + 26671453 26671493 41 CGCGTCCCCGACAACTCCTTGTTGGAGGCCACAAGCCGTAG CGCGTCCCCGACAACTCCTTGTTGGAGGCCACAAGCTGTAG < 41bp 1 0.761195728445881 NA NA experiment 0.477608543108238 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control TNFAIP1 ENSG00000109079 CDS Human protein_coding chr17:26671473 chr17:26671489 nonsynonymous SNV 1.000 2 37 hm7G_associated_SNPs_496 0 0 1 0 1 TNFAIP1 chr17:26671390 3'AG 26671390 Downstream 100bp 422 chr19 11145689 11145689 1 + G A COAD 11145685 + 11145665 11145705 41 CTCCCCTCGTGGATCATCAAGGACGACGCGGAGGTGGAGCG CTCCCCTCGTGGATCATCAAGGACAACGCGGAGGTGGAGCG < 41bp 1 0.616806344471074 NA NA experiment 0.766387311057853 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145685 chr19:11145689 nonsynonymous SNV 0.464 4 25 hm7G_associated_SNPs_497 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 100bp 423 chr2 3627776 3627776 1 + C T COAD 3627769 + 3627749 3627789 41 CCAAGCGAAATTGTGGGCAAGAGAATCCGCGTCAAACTAGA CCAAGCGAAATTGTGGGCAAGAGAATCTGCGTCAAACTAGA < 41bp 1 0.726001848117642 NA NA experiment 0.547996303764715 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627769 chr2:3627776 nonsynonymous SNV 0.985 4 28 hm7G_associated_SNPs_498 0 0 1 0 2 RPS7 chr2:3627700 3'AG 3627700 Downstream 77bp 424 chr2 3627776 3627776 1 + C T COAD 3627769 + 3627749 3627789 41 CCAAGCGAAATTGTGGGCAAGAGAATCCGCGTCAAACTAGA CCAAGCGAAATTGTGGGCAAGAGAATCTGCGTCAAACTAGA < 41bp 1 0.726001848117642 NA NA experiment 0.547996303764715 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627769 chr2:3627776 nonsynonymous SNV 0.985 4 28 hm7G_associated_SNPs_498 0 0 1 0 2 RPS7 chr2:3627850 5'GT 3627850 Upstream 75bp 425 chr9 139734849 139734849 1 + C T COAD 139734839 + 139734819 139734859 41 AAGGACAAGGAGGAGGGCAAGGAGGAGCGGCGACGGCGGCA AAGGACAAGGAGGAGGGCAAGGAGGAGCGGTGACGGCGGCA < 41bp 1 0.791478285159247 NA NA experiment 0.417043429681505 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABL6 ENSG00000196642 CDS Human protein_coding chr9:139734839 chr9:139734849 stopgain 0.011 0 31 hm7G_associated_SNPs_499 0 0 1 0 1 RABL6 chr9:139734774 3'AG 139734774 Downstream 76bp 426 chr3 128990664 128990664 1 + C T COAD 128990659 + 128990639 128990679 41 GGTCTTGGGCCCCTCTTCAAGTCCTCGCCTGAGCCCGTGGC GGTCTTGGGCCCCTCTTCAAGTCCTTGCCTGAGCCCGTGGC < 41bp 1 0.603220636819631 NA NA experiment 0.793558726360739 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment COPG1 ENSG00000181789 CDS Human protein_coding chr3:128990659 chr3:128990664 nonsynonymous SNV 0.918 4 26 hm7G_associated_SNPs_500 0 0 1 0 2 COPG1 chr3:128990610 3'AG 128990610 Downstream 55bp 427 chr3 128990664 128990664 1 + C T COAD 128990659 + 128990639 128990679 41 GGTCTTGGGCCCCTCTTCAAGTCCTCGCCTGAGCCCGTGGC GGTCTTGGGCCCCTCTTCAAGTCCTTGCCTGAGCCCGTGGC < 41bp 1 0.603220636819631 NA NA experiment 0.793558726360739 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment COPG1 ENSG00000181789 CDS Human protein_coding chr3:128990659 chr3:128990664 nonsynonymous SNV 0.918 4 26 hm7G_associated_SNPs_500 0 0 1 0 2 COPG1 chr3:128990752 5'GT 128990752 Upstream 89bp 428 chr22 24135750 24135750 1 + C T COAD 24135752 + 24135732 24135772 41 TTTGTCTGTTACAGATCACGGATACACGACTCTAGCCACCA TTTGTCTGTTACAGATCATGGATACACGACTCTAGCCACCA < 41bp 1 0.486274602400807 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SMARCB1 ENSG00000099956 CDS Human protein_coding chr22:24135752 chr22:24135750 synonymous SNV . 0 19 hm7G_associated_SNPs_501 2 0 1 0 1 SMARCB1 chr22:24135746 3'AG 24135746 Downstream 5bp 429 chr1 120284473 120284473 1 + G A COAD 120284463 + 120284443 120284483 41 CTCCTGAAAGAGGCTTCCAAGCAGGCGGATGTGAACTTGGT CTCCTGAAAGAGGCTTCCAAGCAGGCGGATATGAACTTGGT < 41bp 1 0.785763829888467 NA NA experiment 0.428472340223066 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PHGDH ENSG00000092621 CDS Human protein_coding chr1:120284463 chr1:120284473 nonsynonymous SNV 0.719 1 31 hm7G_associated_SNPs_502 0 0 1 0 2 PHGDH chr1:120284390 3'AG 120284390 Downstream 84bp 430 chr1 120284473 120284473 1 + G A COAD 120284463 + 120284443 120284483 41 CTCCTGAAAGAGGCTTCCAAGCAGGCGGATGTGAACTTGGT CTCCTGAAAGAGGCTTCCAAGCAGGCGGATATGAACTTGGT < 41bp 1 0.785763829888467 NA NA experiment 0.428472340223066 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PHGDH ENSG00000092621 CDS Human protein_coding chr1:120284463 chr1:120284473 nonsynonymous SNV 0.719 1 31 hm7G_associated_SNPs_502 0 0 1 0 2 PHGDH chr1:120284520 5'GT 120284520 Upstream 48bp 431 chr22 24135751 24135751 1 + G A COAD 24135752 + 24135732 24135772 41 TTTGTCTGTTACAGATCACGGATACACGACTCTAGCCACCA TTTGTCTGTTACAGATCACAGATACACGACTCTAGCCACCA < 41bp 1 0.73790845038971 NA NA experiment 0.52418309922058 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SMARCB1 ENSG00000099956 CDS Human protein_coding chr22:24135752 chr22:24135751 nonsynonymous SNV 0.415 4 20 hm7G_associated_SNPs_503 0 0 1 0 1 SMARCB1 chr22:24135746 3'AG 24135746 Downstream 6bp 432 chr17 76210435 76210435 1 + T C COAD 76210442 + 76210422 76210462 41 GCCTGGCAGCCCTTTCTCAAGGACCACCGCATCTCTACATT GCCTGGCAGCCCTCTCTCAAGGACCACCGCATCTCTACATT < 41bp 1 0.571800242734894 NA NA experiment 0.856399514530212 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment BIRC5 ENSG00000089685 CDS Human protein_coding chr17:76210442 chr17:76210435 nonsynonymous SNV 0.736 0 14 hm7G_associated_SNPs_505 0 0 1 0 1 BIRC5 chr17:76210508 5'GT 76210508 Upstream 74bp 433 chr1 46083204 46083204 1 + G A COAD 46083189 + 46083169 46083209 41 ATGCAAAGAAAGCCAAACAAGAGCCGGAGGTGAACGGAGGC ATGCAAAGAAAGCCAAACAAGAGCCGGAGGTGAACAGAGGC < 41bp 1 0.746021553464637 NA NA experiment 0.507956893070725 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NASP ENSG00000132780 CDS Human protein_coding chr1:46083189 chr1:46083204 nonsynonymous SNV 1.000 3 36 hm7G_associated_SNPs_506 0 0 1 0 2 NASP chr1:46083135 3'AG 46083135 Downstream 70bp 434 chr1 46083204 46083204 1 + G A COAD 46083189 + 46083169 46083209 41 ATGCAAAGAAAGCCAAACAAGAGCCGGAGGTGAACGGAGGC ATGCAAAGAAAGCCAAACAAGAGCCGGAGGTGAACAGAGGC < 41bp 1 0.746021553464637 NA NA experiment 0.507956893070725 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NASP ENSG00000132780 CDS Human protein_coding chr1:46083189 chr1:46083204 nonsynonymous SNV 1.000 3 36 hm7G_associated_SNPs_506 0 0 1 0 2 NASP chr1:46083263 5'GT 46083263 Upstream 60bp 435 chr16 57484954 57484954 1 + G A COAD 57484969 + 57484949 57484989 41 CAGTGGCCCGTTGCCGACAAGCCCTGGTGCCGCGTGCCTTC CAGTGACCCGTTGCCGACAAGCCCTGGTGCCGCGTGCCTTC < 41bp 1 0.719963252222381 NA NA experiment 0.560073495555238 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment COQ9 ENSG00000088682 CDS Human protein_coding chr16:57484969 chr16:57484954 nonsynonymous SNV 0.810 0 6 hm7G_associated_SNPs_507 0 0 1 0 1 COQ9 chr16:57484952 3'AG 57484952 Downstream 3bp 436 chr19 4501278 4501278 1 + G A COAD 4501264 + 4501244 4501284 41 GGGGAGAGCGCAGAGGACAAGGAGCACGAGGAGGGTCGGGA GGGGAGAGCGCAGAGGACAAGGAGCACGAGGAGGATCGGGA < 41bp 1 0.773152992261379 NA NA experiment 0.453694015477243 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4501264 chr19:4501278 nonsynonymous SNV 0.034 0 35 hm7G_associated_SNPs_508 0 0 1 0 2 HDGFL2 chr19:4501203 3'AG 4501203 Downstream 76bp 437 chr19 4501278 4501278 1 + G A COAD 4501264 + 4501244 4501284 41 GGGGAGAGCGCAGAGGACAAGGAGCACGAGGAGGGTCGGGA GGGGAGAGCGCAGAGGACAAGGAGCACGAGGAGGATCGGGA < 41bp 1 0.773152992261379 NA NA experiment 0.453694015477243 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4501264 chr19:4501278 nonsynonymous SNV 0.034 0 35 hm7G_associated_SNPs_508 0 0 1 0 2 HDGFL2 chr19:4501329 5'GT 4501329 Upstream 52bp 438 chr16 2026250 2026250 1 + C T COAD 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT CGTATCTGGAGAATGAACAAGGCTGGTCAGGTGATGTGCGT < 41bp 1 0.567425696581765 NA NA experiment 0.86514860683647 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026250 synonymous SNV . 0 27 hm7G_associated_SNPs_509 0 0 1 0 3 TBL3 chr16:2026212 3'AG 2026212 Downstream 39bp 439 chr16 2026250 2026250 1 + C T COAD 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT CGTATCTGGAGAATGAACAAGGCTGGTCAGGTGATGTGCGT < 41bp 1 0.567425696581765 NA NA experiment 0.86514860683647 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026250 synonymous SNV . 0 27 hm7G_associated_SNPs_509 0 0 1 0 3 TBL3 chr16:2026258 5'GT 2026258 Upstream 9bp 440 chr16 2026250 2026250 1 + C T COAD 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT CGTATCTGGAGAATGAACAAGGCTGGTCAGGTGATGTGCGT < 41bp 1 0.567425696581765 NA NA experiment 0.86514860683647 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026250 synonymous SNV . 0 27 hm7G_associated_SNPs_509 0 0 1 0 3 TBL3 chr16:2026315 5'GT 2026315 Upstream 66bp 441 chr14 105169688 105169688 1 + C T COAD 105169684 + 105169664 105169704 41 TGTCATGAACGAGCTCTCCGGCAGCGACAACGTGCCCTACG TGTCATGAACGAGCTCTCCGGCAGTGACAACGTGCCCTACG < 41bp 1 0.292306201871371 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105169684 chr14:105169688 synonymous SNV . 0 25 hm7G_associated_SNPs_511 0 0 0 0 1 INF2 chr14:105169632 3'AG 105169632 Downstream 57bp 442 chr10 7838094 7838094 1 + C T COAD 7838091 + 7838071 7838111 41 CTTTTATCCTCAGGATTCAAGTTCGAAATATGGCAACTTTG CTTTTATCCTCAGGATTCAAGTTTGAAATATGGCAACTTTG < 41bp 1 0.684576799230164 NA NA experiment 0.630846401539673 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7838091 chr10:7838094 stopgain 0.998 1 24 hm7G_associated_SNPs_512 0 0 1 0 2 ATP5C1 chr10:7838084 3'AG 7838084 Downstream 11bp 443 chr10 7838094 7838094 1 + C T COAD 7838091 + 7838071 7838111 41 CTTTTATCCTCAGGATTCAAGTTCGAAATATGGCAACTTTG CTTTTATCCTCAGGATTCAAGTTTGAAATATGGCAACTTTG < 41bp 1 0.684576799230164 NA NA experiment 0.630846401539673 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7838091 chr10:7838094 stopgain 0.998 1 24 hm7G_associated_SNPs_512 0 0 1 0 2 ATP5C1 chr10:7838118 5'GT 7838118 Upstream 25bp 444 chr19 50338288 50338288 1 + G A COAD 50338272 + 50338252 50338292 41 GTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCGTGCT GTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCATGCT < 41bp 1 0.647123295802449 NA NA experiment 0.705753408395102 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338272 chr19:50338288 nonsynonymous SNV 0.817 4 37 hm7G_associated_SNPs_513 0 0 0 0 1 MED25 chr19:50338243 3'AG 50338243 Downstream 46bp 445 chr3 4712494 4712494 1 + G T COAD 4712483 + 4712463 4712503 41 ATGCTCTGGAGGCAGGAGAAGACGAGGAAGAGGTGTGGCTG ATGCTCTGGAGGCAGGAGAAGACGAGGAAGATGTGTGGCTG < 41bp 1 0.472488575689335 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4712483 chr3:4712494 nonsynonymous SNV 0.979 4 32 hm7G_associated_SNPs_514 0 0 1 0 1 ITPR1 chr3:4712413 3'AG 4712413 Downstream 82bp 446 chr7 74005276 74005276 1 + G A COAD 74005287 + 74005267 74005307 41 AACACGTACGACATCCACCGGCTGGAGAAGATCCTGAAGGC AACACGTACAACATCCACCGGCTGGAGAAGATCCTGAAGGC < 41bp 1 0.627780110164914 NA NA experiment 0.744439779670173 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74005287 chr7:74005276 nonsynonymous SNV 0.678 4 10 hm7G_associated_SNPs_515 0 0 1 0 1 GTF2IRD1 chr7:74005346 5'GT 74005346 Upstream 71bp 447 chr1 228284826 228284826 1 + T G COAD 228284845 + 228284825 228284865 41 ATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGA AGCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGA < 41bp 1 0.65417030160555 NA NA experiment 0.691659396788901 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228284845 chr1:228284826 nonsynonymous SNV 1.000 1 2 hm7G_associated_SNPs_516 0 0 1 0 1 ARF1 chr1:228284779 3'AG 228284779 Downstream 48bp 448 chr17 80443410 80443410 1 + G A COAD 80443411 + 80443391 80443431 41 GGTCACCCTTGAGAAGAACGGAGAGGTGGTGTTACGCTTTG GGTCACCCTTGAGAAGAACAGAGAGGTGGTGTTACGCTTTG < 41bp 1 0.537034795956378 NA NA experiment 0.925930408087244 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80443411 chr17:80443410 nonsynonymous SNV 0.207 4 20 hm7G_associated_SNPs_517 0 0 1 0 1 NARF chr17:80443373 3'AG 80443373 Downstream 38bp 449 chr1 32497155 32497155 1 + C A COAD 32497158 + 32497138 32497178 41 GGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTG GGAAGATTCTTGGACCAAAAGGGAATACAATCAAAAGACTG < 41bp 1 0.683435628461732 NA NA experiment 0.633128743076536 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32497158 chr1:32497155 nonsynonymous SNV 0.999 1 18 hm7G_associated_SNPs_518 0 0 1 0 2 KHDRBS1 chr1:32497125 3'AG 32497125 Downstream 31bp 450 chr1 32497155 32497155 1 + C A COAD 32497158 + 32497138 32497178 41 GGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTG GGAAGATTCTTGGACCAAAAGGGAATACAATCAAAAGACTG < 41bp 1 0.683435628461732 NA NA experiment 0.633128743076536 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32497158 chr1:32497155 nonsynonymous SNV 0.999 1 18 hm7G_associated_SNPs_518 0 0 1 0 2 KHDRBS1 chr1:32497241 5'GT 32497241 Upstream 87bp 451 chr7 127721475 127721475 1 + C T COAD 127721492 + 127721472 127721512 41 GAGCGATCTGCTAGCTACAAGCCCGTGTTTGTGACTGAGAT GAGTGATCTGCTAGCTACAAGCCCGTGTTTGTGACTGAGAT < 41bp 1 0.394618949934248 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127721492 chr7:127721475 stopgain 0.988 1 4 hm7G_associated_SNPs_519 0 0 1 0 2 SND1 chr7:127721412 3'AG 127721412 Downstream 64bp 452 chr7 127721475 127721475 1 + C T COAD 127721492 + 127721472 127721512 41 GAGCGATCTGCTAGCTACAAGCCCGTGTTTGTGACTGAGAT GAGTGATCTGCTAGCTACAAGCCCGTGTTTGTGACTGAGAT < 41bp 1 0.394618949934248 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127721492 chr7:127721475 stopgain 0.988 1 4 hm7G_associated_SNPs_519 0 0 1 0 2 SND1 chr7:127721553 5'GT 127721553 Upstream 79bp 453 chr19 805080 805080 1 + G A COAD 805072 + 805052 805092 41 CTGCGCATCGACTTTTCCAAGCTCACCAGCCTCAACGTCAA CTGCGCATCGACTTTTCCAAGCTCACCAACCTCAACGTCAA < 41bp 1 0.729414491059508 NA NA experiment 0.541171017880984 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PTBP1 ENSG00000011304 CDS Human protein_coding chr19:805072 chr19:805080 nonsynonymous SNV 0.997 0 29 hm7G_associated_SNPs_520 0 0 1 2 1 PTBP1 chr19:805013 3'AG 805013 Downstream 68bp 454 chr1 156028163 156028163 1 + C T COAD 156028148 + 156028128 156028168 41 TGGAGGAGCCCCTCACCCAAGTGGCGGCATCTTAACGGCAT TGGAGGAGCCCCTCACCCAAGTGGCGGCATCTTAATGGCAT < 41bp 1 0.651682917474782 NA NA experiment 0.696634165050436 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156028148 chr1:156028163 nonsynonymous SNV 0.046 1 36 hm7G_associated_SNPs_521 0 0 1 0 1 LAMTOR2 chr1:156028106 3'AG 156028106 Downstream 58bp 455 chr22 45970414 45970414 1 + C T COAD 45970430 + 45970410 45970450 41 GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACGATGT GACATGGTCCGCTGCATCAAGTCCTGCCGCCCCAACGATGT < 41bp 1 0.396928571140969 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45970430 chr22:45970414 nonsynonymous SNV 0.571 4 5 hm7G_associated_SNPs_522 0 0 0 0 1 FBLN1 chr22:45970391 3'AG 45970391 Downstream 24bp 456 chr19 55899331 55899331 1 + C A COAD 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGAACACCATCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.77053855975608 NA NA experiment 0.45892288048784 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899331 nonsynonymous SNV 0.998 1 8 hm7G_associated_SNPs_523 0 0 0 0 2 RPL28 chr19:55899298 3'AG 55899298 Downstream 34bp 457 chr19 55899331 55899331 1 + C A COAD 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGAACACCATCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.77053855975608 NA NA experiment 0.45892288048784 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899331 nonsynonymous SNV 0.998 1 8 hm7G_associated_SNPs_523 0 0 0 0 2 RPL28 chr19:55899416 5'GT 55899416 Upstream 86bp 458 chr17 7496107 7496107 1 - C T COAD 7496116 - 7496096 7496136 41 TGGGGAACCCCCCCCAGCAAGTGCCAGGCGCCGCCGCTCCC TGGGGAACCCCCCCCAGCAAGTGCCAGGCACCGCCGCTCCC < 41bp 1 0.661216059358577 NA NA experiment 0.677567881282847 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FXR2 ENSG00000129245 CDS Human protein_coding chr17:7496116 chr17:7496107 nonsynonymous SNV 0.992 4 30 hm7G_associated_SNPs_524 0 0 1 0 1 FXR2 chr17:7496012 5'GT 7496012 Upstream 96bp 459 chr3 23960845 23960845 1 + C T COAD 23960840 + 23960820 23960860 41 CCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAGATG CCCAGTGGATCACCAAACCAGTCCATAAGCACAGGGAGATG < 41bp 1 0.650200797226929 NA NA experiment 0.699598405546141 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960840 chr3:23960845 synonymous SNV . 0 26 hm7G_associated_SNPs_525 0 0 1 0 1 RPL15 chr3:23960841 3'AG 23960841 Downstream 5bp 460 chr19 10368918 10368918 1 + C T COAD 10368931 + 10368911 10368951 41 TGGCCCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA TGGCCCCTGGGGCCCCACAAGTTACTACTACATGCTGCCCA < 41bp 1 0.538808993207853 NA NA experiment 0.922382013584293 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368931 chr19:10368918 nonsynonymous SNV 0.997 4 8 hm7G_associated_SNPs_527 0 0 1 0 2 MRPL4 chr19:10368898 3'AG 10368898 Downstream 21bp 461 chr19 10368918 10368918 1 + C T COAD 10368931 + 10368911 10368951 41 TGGCCCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA TGGCCCCTGGGGCCCCACAAGTTACTACTACATGCTGCCCA < 41bp 1 0.538808993207853 NA NA experiment 0.922382013584293 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368931 chr19:10368918 nonsynonymous SNV 0.997 4 8 hm7G_associated_SNPs_527 0 0 1 0 2 MRPL4 chr19:10369004 5'GT 10369004 Upstream 87bp 462 chr19 56172518 56172518 1 + G A COAD 56172511 + 56172491 56172531 41 GGAGCCAGATGACCAGACAAGCCCGGCGCCTCTACGTGGGC GGAGCCAGATGACCAGACAAGCCCGGCACCTCTACGTGGGC < 41bp 1 0.592229367263725 NA NA experiment 0.815541265472551 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56172511 chr19:56172518 nonsynonymous SNV 0.998 3 28 hm7G_associated_SNPs_528 0 0 1 0 1 U2AF2 chr19:56172555 5'GT 56172555 Upstream 38bp 463 chr16 2807894 2807894 1 + C T COAD 2807898 + 2807878 2807918 41 CTCTTTTGATCCTCAGCGTCGTGCCCGAGAAGCTAAACAAC CTCTTTTGATCCTCAGTGTCGTGCCCGAGAAGCTAAACAAC < 41bp 1 0.484813251325182 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2807898 chr16:2807894 nonsynonymous SNV 0.993 3 17 hm7G_associated_SNPs_529 0 0 1 0 1 SRRM2 chr16:2807946 5'GT 2807946 Upstream 53bp 464 chr1 46081033 46081033 1 + G T COAD 46081029 + 46081009 46081049 41 GGATCGTCTGCTGAATACAAGAAAGAAATTGAGGAACTAAA GGATCGTCTGCTGAATACAAGAAATAAATTGAGGAACTAAA < 41bp 1 0.660487378603348 NA NA experiment 0.679025242793303 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46081029 chr1:46081033 stopgain 1.000 1 25 hm7G_associated_SNPs_530 0 0 1 0 1 NASP chr1:46080977 3'AG 46080977 Downstream 57bp 465 chr12 1346024 1346024 1 + C T COAD 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGTGCGACGACGGGAGGACAATCTCA < 41bp 1 0.62540777802305 NA NA experiment 0.7491844439539 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346024 nonsynonymous SNV 0.621 3 18 hm7G_associated_SNPs_531 0 0 1 0 2 ERC1 chr12:1345935 3'AG 1345935 Downstream 90bp 466 chr12 1346024 1346024 1 + C T COAD 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGTGCGACGACGGGAGGACAATCTCA < 41bp 1 0.62540777802305 NA NA experiment 0.7491844439539 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346024 nonsynonymous SNV 0.621 3 18 hm7G_associated_SNPs_531 0 0 1 0 2 ERC1 chr12:1346070 5'GT 1346070 Upstream 47bp 467 chr1 201843448 201843448 1 + C T COAD 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACGAGCTCTCCAATGTCATGGAGGCTAATGCCGCT < 41bp 1 0.659896974240174 NA NA experiment 0.680206051519651 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843448 synonymous SNV . 0 20 hm7G_associated_SNPs_532 0 0 1 0 2 IPO9 chr1:201843378 3'AG 201843378 Downstream 71bp 468 chr1 201843448 201843448 1 + C T COAD 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACGAGCTCTCCAATGTCATGGAGGCTAATGCCGCT < 41bp 1 0.659896974240174 NA NA experiment 0.680206051519651 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843448 synonymous SNV . 0 20 hm7G_associated_SNPs_532 0 0 1 0 2 IPO9 chr1:201843500 5'GT 201843500 Upstream 53bp 469 chr1 46081009 46081009 1 + G A COAD 46081029 + 46081009 46081049 41 GGATCGTCTGCTGAATACAAGAAAGAAATTGAGGAACTAAA AGATCGTCTGCTGAATACAAGAAAGAAATTGAGGAACTAAA < 41bp 1 0.716939815089079 NA NA experiment 0.566120369821842 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46081029 chr1:46081009 nonsynonymous SNV 0.970 2 1 hm7G_associated_SNPs_534 0 0 1 0 1 NASP chr1:46080977 3'AG 46080977 Downstream 33bp 470 chr1 155282123 155282123 1 + G A COAD 155282128 + 155282108 155282148 41 CCGGGAGCTGGTGGAGCCAAGGAAACAGGATGCTGATAGTC CCGGGAGCTGGTGGAACCAAGGAAACAGGATGCTGATAGTC < 41bp 1 0.78543711263006 NA NA experiment 0.42912577473988 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FDPS ENSG00000160752 CDS Human protein_coding chr1:155282128 chr1:155282123 synonymous SNV . 0 16 hm7G_associated_SNPs_536 0 0 1 0 2 FDPS chr1:155282046 3'AG 155282046 Downstream 78bp 471 chr1 155282123 155282123 1 + G A COAD 155282128 + 155282108 155282148 41 CCGGGAGCTGGTGGAGCCAAGGAAACAGGATGCTGATAGTC CCGGGAGCTGGTGGAACCAAGGAAACAGGATGCTGATAGTC < 41bp 1 0.78543711263006 NA NA experiment 0.42912577473988 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FDPS ENSG00000160752 CDS Human protein_coding chr1:155282128 chr1:155282123 synonymous SNV . 0 16 hm7G_associated_SNPs_536 0 0 1 0 2 FDPS chr1:155282186 5'GT 155282186 Upstream 64bp 472 chr17 80422207 80422207 1 + C T COAD 80422195 + 80422175 80422215 41 CACAAGTTGGCTGATGCCAAGATATTTTTGAGCGACTGCCT CACAAGTTGGCTGATGCCAAGATATTTTTGAGTGACTGCCT < 41bp 1 0.780040081289671 NA NA experiment 0.439919837420658 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment NARF ENSG00000141562 CDS Human protein_coding chr17:80422195 chr17:80422207 synonymous SNV . 0 33 hm7G_associated_SNPs_537 0 0 1 0 2 NARF chr17:80422163 3'AG 80422163 Downstream 45bp 473 chr17 80422207 80422207 1 + C T COAD 80422195 + 80422175 80422215 41 CACAAGTTGGCTGATGCCAAGATATTTTTGAGCGACTGCCT CACAAGTTGGCTGATGCCAAGATATTTTTGAGTGACTGCCT < 41bp 1 0.780040081289671 NA NA experiment 0.439919837420658 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment NARF ENSG00000141562 CDS Human protein_coding chr17:80422195 chr17:80422207 synonymous SNV . 0 33 hm7G_associated_SNPs_537 0 0 1 0 2 NARF chr17:80422306 5'GT 80422306 Upstream 100bp 474 chr7 143002055 143002055 1 + G A COAD 143002056 + 143002036 143002076 41 AACGCACTTATCAAGGATCGGGAAGGTTATGCTCCTGGCAC AACGCACTTATCAAGGATCAGGAAGGTTATGCTCCTGGCAC < 41bp 1 0.782680437156098 NA NA experiment 0.434639125687803 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CASP2 ENSG00000106144 CDS Human protein_coding chr7:143002056 chr7:143002055 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_540 0 0 1 0 1 CASP2 chr7:143002033 3'AG 143002033 Downstream 23bp 475 chr15 78566575 78566575 1 + C T COAD 78566562 + 78566542 78566582 41 TTGGTGGGAAGAAGGGATCGGTGGAGAAGTGCCCGCTGTGC TTGGTGGGAAGAAGGGATCGGTGGAGAAGTGCCTGCTGTGC < 41bp 1 0.692664098971719 NA NA experiment 0.614671802056562 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78566562 chr15:78566575 nonsynonymous SNV 0.946 1 34 hm7G_associated_SNPs_541 0 0 0 0 1 DNAJA4 chr15:78566539 3'AG 78566539 Downstream 37bp 476 chr17 72205348 72205348 1 + G A COAD 72205333 + 72205313 72205353 41 TGGTCTCCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAA TGGTCTCCGGTAGCTGTCAAGATCAAGAAAAATAAAGACAA < 41bp 1 0.692364840438144 NA NA experiment 0.615270319123712 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72205333 chr17:72205348 synonymous SNV . 0 36 hm7G_associated_SNPs_543 0 0 1 0 1 RPL38 chr17:72205326 3'AG 72205326 Downstream 23bp 477 chr17 72205348 72205348 1 + G A COAD 72205339 + 72205319 72205359 41 CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGTGAA CCGGTAGCTGTCAAGATCAAGAAAAATAAAGACAACGTGAA < 41bp 1 0.733085834842595 NA NA experiment 0.533828330314809 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72205339 chr17:72205348 synonymous SNV . 0 30 hm7G_associated_SNPs_544 0 0 1 0 1 RPL38 chr17:72205326 3'AG 72205326 Downstream 23bp 478 chr6 31637663 31637663 1 + C T COAD 31637662 + 31637642 31637682 41 CCTACCAGCTGCAGCTCCAAGCCGCCAGCAACTTCAAGAGC CCTACCAGCTGCAGCTCCAAGTCGCCAGCAACTTCAAGAGC < 41bp 1 0.221838864038759 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CSNK2B ENSG00000204435 CDS Human protein_coding chr6:31637662 chr6:31637663 nonsynonymous SNV 0.998 0 22 hm7G_associated_SNPs_545 0 0 1 0 1 CSNK2B chr6:31637613 3'AG 31637613 Downstream 51bp 479 chr6 31637663 31637663 1 + C T COAD 31637679 + 31637659 31637699 41 CAAGCCGCCAGCAACTTCAAGAGCCCAGTCAAGACGATTCG CAAGTCGCCAGCAACTTCAAGAGCCCAGTCAAGACGATTCG < 41bp 1 0.384035522505247 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CSNK2B ENSG00000204435 CDS Human protein_coding chr6:31637679 chr6:31637663 nonsynonymous SNV 0.998 0 5 hm7G_associated_SNPs_546 0 0 1 0 1 CSNK2B chr6:31637613 3'AG 31637613 Downstream 51bp 480 chr16 2026262 2026262 1 + C T COAD 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGTGT < 41bp 1 0.551667166055767 NA NA experiment 0.896665667888466 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026262 synonymous SNV . 0 39 hm7G_associated_SNPs_547 0 0 1 0 2 TBL3 chr16:2026212 3'AG 2026212 Downstream 51bp 481 chr16 2026262 2026262 1 + C T COAD 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGTGT < 41bp 1 0.551667166055767 NA NA experiment 0.896665667888466 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026262 synonymous SNV . 0 39 hm7G_associated_SNPs_547 0 0 1 0 2 TBL3 chr16:2026315 5'GT 2026315 Upstream 54bp 482 chr3 197678057 197678057 1 + C T DLBC 197678042 + 197678022 197678062 41 TGTCTTAGGCTGTGGTCCAAGGCCATTTTTGCTGGCTATAA TGTCTTAGGCTGTGGTCCAAGGCCATTTTTGCTGGTTATAA < 41bp 1 0.677018632244797 NA NA experiment 0.645962735510406 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL35A ENSG00000182899 CDS Human protein_coding chr3:197678042 chr3:197678057 synonymous SNV . 0 36 hm7G_associated_SNPs_548 0 0 1 0 1 RPL35A chr3:197678030 3'AG 197678030 Downstream 28bp 483 chr19 2247610 2247610 1 + C T DLBC 2247616 + 2247596 2247636 41 CCGAGCAGAGAGATCGACAAGGCGGAGGGCAAGTTCTGGAC CCGAGCAGAGAGATTGACAAGGCGGAGGGCAAGTTCTGGAC < 41bp 1 0.792423101421725 NA NA experiment 0.41515379715655 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2247616 chr19:2247610 synonymous SNV . 0 15 hm7G_associated_SNPs_549 0 0 1 0 2 SF3A2 chr19:2247593 3'AG 2247593 Downstream 18bp 484 chr19 2247610 2247610 1 + C T DLBC 2247616 + 2247596 2247636 41 CCGAGCAGAGAGATCGACAAGGCGGAGGGCAAGTTCTGGAC CCGAGCAGAGAGATTGACAAGGCGGAGGGCAAGTTCTGGAC < 41bp 1 0.792423101421725 NA NA experiment 0.41515379715655 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2247616 chr19:2247610 synonymous SNV . 0 15 hm7G_associated_SNPs_549 0 0 1 0 2 SF3A2 chr19:2247661 5'GT 2247661 Upstream 52bp 485 chr19 2247610 2247610 1 + C T DLBC 2247628 + 2247608 2247648 41 ATCGACAAGGCGGAGGGCAAGTTCTGGACACACTGGAACCG ATTGACAAGGCGGAGGGCAAGTTCTGGACACACTGGAACCG < 41bp 1 0.772468095367923 NA NA experiment 0.455063809264153 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2247628 chr19:2247610 synonymous SNV . 0 3 hm7G_associated_SNPs_550 0 0 1 0 2 SF3A2 chr19:2247593 3'AG 2247593 Downstream 18bp 486 chr19 2247610 2247610 1 + C T DLBC 2247628 + 2247608 2247648 41 ATCGACAAGGCGGAGGGCAAGTTCTGGACACACTGGAACCG ATTGACAAGGCGGAGGGCAAGTTCTGGACACACTGGAACCG < 41bp 1 0.772468095367923 NA NA experiment 0.455063809264153 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SF3A2 ENSG00000104897 CDS Human protein_coding chr19:2247628 chr19:2247610 synonymous SNV . 0 3 hm7G_associated_SNPs_550 0 0 1 0 2 SF3A2 chr19:2247661 5'GT 2247661 Upstream 52bp 487 chr20 60878686 60878686 1 + A G DLBC 60878687 + 60878667 60878707 41 TCTCGGGGCGCCTCCAACAAGTACTTGGTGGAGTTTCGGGC TCTCGGGGCGCCTCCAACAGGTACTTGGTGGAGTTTCGGGC < 41bp 1 0.622401450643363 NA NA experiment 0.755197098713273 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60878687 chr20:60878686 nonsynonymous SNV 0.798 2 20 hm7G_associated_SNPs_551 0 0 1 0 1 ADRM1 chr20:60878624 3'AG 60878624 Downstream 63bp 488 chr3 142772588 142772588 1 + C G ESCA 142772598 + 142772578 142772618 41 GAATCTCGCTCCAAAGACAAGAAGGAAAAAGATGAGTGTAC GAATCTCGCTGCAAAGACAAGAAGGAAAAAGATGAGTGTAC < 41bp 1 0.699660883006568 NA NA experiment 0.600678233986863 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment U2SURP ENSG00000163714 CDS Human protein_coding chr3:142772598 chr3:142772588 nonsynonymous SNV 1.000 1 11 hm7G_associated_SNPs_552 0 0 1 0 1 U2SURP chr3:142772518 3'AG 142772518 Downstream 71bp 489 chr17 39976531 39976531 1 + C T ESCA 39976528 + 39976508 39976548 41 ATTCTGGCCTCAGGAGACAAGATCCCTGGCTCTGCCGTGCT ATTCTGGCCTCAGGAGACAAGATTCCTGGCTCTGCCGTGCT < 41bp 1 0.779083751280838 NA NA experiment 0.441832497438325 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39976528 chr17:39976531 synonymous SNV . 0 24 hm7G_associated_SNPs_553 0 0 1 0 1 FKBP10 chr17:39976521 3'AG 39976521 Downstream 11bp 490 chr17 39976533 39976533 1 + C A ESCA 39976528 + 39976508 39976548 41 ATTCTGGCCTCAGGAGACAAGATCCCTGGCTCTGCCGTGCT ATTCTGGCCTCAGGAGACAAGATCCATGGCTCTGCCGTGCT < 41bp 1 0.798078532893129 NA NA experiment 0.403842934213743 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39976528 chr17:39976533 nonsynonymous SNV 0.995 5 26 hm7G_associated_SNPs_554 0 0 1 0 1 FKBP10 chr17:39976521 3'AG 39976521 Downstream 13bp 491 chr17 39976532 39976532 1 + C T ESCA 39976528 + 39976508 39976548 41 ATTCTGGCCTCAGGAGACAAGATCCCTGGCTCTGCCGTGCT ATTCTGGCCTCAGGAGACAAGATCTCTGGCTCTGCCGTGCT < 41bp 1 0.753139500685321 NA NA experiment 0.493720998629358 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39976528 chr17:39976532 nonsynonymous SNV 0.997 5 25 hm7G_associated_SNPs_555 0 0 1 0 1 FKBP10 chr17:39976521 3'AG 39976521 Downstream 12bp 492 chr21 34787211 34787211 1 + G T ESCA 34787194 + 34787174 34787214 41 TTTTTCTCTGTCCCCCTCAAGACCCTCTTTCCCAGCTGCCC TTTTTCTCTGTCCCCCTCAAGACCCTCTTTCCCAGCTTCCC < 41bp 1 0.267876041458739 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787194 chr21:34787211 synonymous SNV . 0 38 hm7G_associated_SNPs_556 0 0 1 0 1 IFNGR2 chr21:34787195 3'AG 34787195 Downstream 17bp 493 chr20 57485067 57485067 1 + G T ESCA 57485049 + 57485029 57485069 41 TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAAGTC TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAATTC < 41bp 1 0.500944645244773 NA NA experiment 0.998110709510454 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485049 chr20:57485067 nonsynonymous SNV 1.000 5 39 hm7G_associated_SNPs_557 0 0 1 1 2 GNAS chr20:57485006 3'AG 57485006 Downstream 62bp 494 chr20 57485067 57485067 1 + G T ESCA 57485049 + 57485029 57485069 41 TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAAGTC TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAATTC < 41bp 1 0.500944645244773 NA NA experiment 0.998110709510454 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485049 chr20:57485067 nonsynonymous SNV 1.000 5 39 hm7G_associated_SNPs_557 0 0 1 1 2 GNAS chr20:57485136 5'GT 57485136 Upstream 70bp 495 chr19 5131108 5131108 1 + G A ESCA 5131093 + 5131073 5131113 41 TCCTCTTCCCACAGAGGACGGGAGGGGCAAGCTGCGGCCAA TCCTCTTCCCACAGAGGACGGGAGGGGCAAGCTGCAGCCAA < 41bp 1 0.411116638687932 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5131093 chr19:5131108 nonsynonymous SNV 0.023 2 36 hm7G_associated_SNPs_559 0 0 1 0 1 KDM4B chr19:5131087 3'AG 5131087 Downstream 22bp 496 chr19 14578588 14578588 1 + C A ESCA 14578569 + 14578549 14578589 41 CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCCG CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCAG < 41bp 1 0.715860001963323 NA NA experiment 0.568279996073354 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578569 chr19:14578588 synonymous SNV . 0 40 hm7G_associated_SNPs_560 0 0 1 0 2 PKN1 chr19:14578530 3'AG 14578530 Downstream 59bp 497 chr19 14578588 14578588 1 + C A ESCA 14578569 + 14578549 14578589 41 CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCCG CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCAG < 41bp 1 0.715860001963323 NA NA experiment 0.568279996073354 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578569 chr19:14578588 synonymous SNV . 0 40 hm7G_associated_SNPs_560 0 0 1 0 2 PKN1 chr19:14578605 5'GT 14578605 Upstream 18bp 498 chr12 6973255 6973255 1 + G T ESCA 6973265 + 6973245 6973285 41 TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCTC TAGTGGGCCGTGCTCCACAAGCGCAGCAGCCGACCCCCCTC < 41bp 1 0.746295081311452 NA NA experiment 0.507409837377096 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment USP5 ENSG00000111667 CDS Human protein_coding chr12:6973265 chr12:6973255 nonsynonymous SNV 0.759 4 11 hm7G_associated_SNPs_561 0 0 1 0 1 USP5 chr12:6973214 3'AG 6973214 Downstream 42bp 499 chr17 80443401 80443401 1 + G C ESCA 80443411 + 80443391 80443431 41 GGTCACCCTTGAGAAGAACGGAGAGGTGGTGTTACGCTTTG GGTCACCCTTCAGAAGAACGGAGAGGTGGTGTTACGCTTTG < 41bp 1 0.330463622985483 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80443411 chr17:80443401 nonsynonymous SNV 0.980 3 11 hm7G_associated_SNPs_562 0 0 1 0 1 NARF chr17:80443373 3'AG 80443373 Downstream 29bp 500 chr5 154330416 154330416 1 + C A ESCA 154330410 + 154330390 154330430 41 TCAATCATATATCCACACAAGTGCTTCTCTTGACATTTCTC TCAATCATATATCCACACAAGTGCTTATCTTGACATTTCTC < 41bp 1 0.350874463312779 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330410 chr5:154330416 nonsynonymous SNV 0.987 1 27 hm7G_associated_SNPs_565 0 0 1 0 1 MRPL22 chr5:154330498 5'GT 154330498 Upstream 83bp 501 chr7 74005272 74005272 1 + G A ESCA 74005287 + 74005267 74005307 41 AACACGTACGACATCCACCGGCTGGAGAAGATCCTGAAGGC AACACATACGACATCCACCGGCTGGAGAAGATCCTGAAGGC < 41bp 1 0.61156175410896 NA NA experiment 0.776876491782079 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74005287 chr7:74005272 synonymous SNV . 0 6 hm7G_associated_SNPs_566 0 0 1 0 1 GTF2IRD1 chr7:74005346 5'GT 74005346 Upstream 75bp 502 chr1 10464257 10464257 1 + G T ESCA 10464244 + 10464224 10464264 41 TGCCGAGACCTCAAGGCCAAGGGAATTTTATTTGTGGGGAG TGCCGAGACCTCAAGGCCAAGGGAATTTTATTTTTGGGGAG < 41bp 1 0.622549151353155 NA NA experiment 0.75490169729369 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10464244 chr1:10464257 nonsynonymous SNV 0.996 2 34 hm7G_associated_SNPs_567 0 0 1 0 2 PGD chr1:10464218 3'AG 10464218 Downstream 40bp 503 chr1 10464257 10464257 1 + G T ESCA 10464244 + 10464224 10464264 41 TGCCGAGACCTCAAGGCCAAGGGAATTTTATTTGTGGGGAG TGCCGAGACCTCAAGGCCAAGGGAATTTTATTTTTGGGGAG < 41bp 1 0.622549151353155 NA NA experiment 0.75490169729369 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10464244 chr1:10464257 nonsynonymous SNV 0.996 2 34 hm7G_associated_SNPs_567 0 0 1 0 2 PGD chr1:10464336 5'GT 10464336 Upstream 80bp 504 chr17 78280097 78280097 1 + C T GBM 78280117 + 78280097 78280137 41 CATAGACGAGCCTCTCTTCCGGTCCTGGTTTAGTCTGCTAC TATAGACGAGCCTCTCTTCCGGTCCTGGTTTAGTCTGCTAC < 41bp 1 0.208799480763587 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RNF213 ENSG00000173821 CDS Human protein_coding chr17:78280117 chr17:78280097 synonymous SNV . 0 1 hm7G_associated_SNPs_569 0 0 1 0 1 RNF213 chr17:78280052 3'AG 78280052 Downstream 46bp 505 chr22 38274115 38274115 1 + C T GBM 38274104 + 38274084 38274124 41 AACACAAGATGAAGAACCTCGTGTGGACCAGCGGTATCTCA AACACAAGATGAAGAACCTCGTGTGGACCAGTGGTATCTCA < 41bp 1 0.573327265344787 NA NA experiment 0.853345469310426 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38274104 chr22:38274115 synonymous SNV . 0 32 hm7G_associated_SNPs_570 0 0 1 0 1 EIF3L chr22:38274178 5'GT 38274178 Upstream 64bp 506 chr19 10367410 10367410 1 + C T GBM 10367401 + 10367381 10367421 41 CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGCGGGG CAGAGCTATGCCAAGACCAAGACGAGAGCTGAGGTGCGGGG < 41bp 1 0.776210550028602 NA NA experiment 0.447578899942796 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367401 chr19:10367410 synonymous SNV . 0 30 hm7G_associated_SNPs_571 0 0 1 0 2 MRPL4 chr19:10367384 3'AG 10367384 Downstream 27bp 507 chr19 10367410 10367410 1 + C T GBM 10367401 + 10367381 10367421 41 CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGCGGGG CAGAGCTATGCCAAGACCAAGACGAGAGCTGAGGTGCGGGG < 41bp 1 0.776210550028602 NA NA experiment 0.447578899942796 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367401 chr19:10367410 synonymous SNV . 0 30 hm7G_associated_SNPs_571 0 0 1 0 2 MRPL4 chr19:10367501 5'GT 10367501 Upstream 92bp 508 chr19 49518864 49518864 1 + C A GBM 49518858 + 49518838 49518878 41 GTGCAGGTGGATGACATCAAGCGGGTCTACTCACTCTTCCT GTGCAGGTGGATGACATCAAGCGGGTATACTCACTCTTCCT < 41bp 1 0.678426970010457 NA NA experiment 0.643146059979086 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49518858 chr19:49518864 nonsynonymous SNV 0.982 0 27 hm7G_associated_SNPs_572 0 0 1 1 1 RUVBL2 chr19:49518943 5'GT 49518943 Upstream 80bp 509 chr6 30545865 30545865 1 + C T GBM 30545885 + 30545865 30545905 41 CGAGATACCCGAAAAGGCAGGCGGAAGAAGGATGTGGATGA TGAGATACCCGAAAAGGCAGGCGGAAGAAGGATGTGGATGA < 41bp 1 0.539479102268967 NA NA experiment 0.921041795462067 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545885 chr6:30545865 stopgain 0.998 0 1 hm7G_associated_SNPs_573 0 0 1 0 2 ABCF1 chr6:30545850 3'AG 30545850 Downstream 16bp 510 chr6 30545865 30545865 1 + C T GBM 30545885 + 30545865 30545905 41 CGAGATACCCGAAAAGGCAGGCGGAAGAAGGATGTGGATGA TGAGATACCCGAAAAGGCAGGCGGAAGAAGGATGTGGATGA < 41bp 1 0.539479102268967 NA NA experiment 0.921041795462067 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABCF1 ENSG00000204574 CDS Human protein_coding chr6:30545885 chr6:30545865 stopgain 0.998 0 1 hm7G_associated_SNPs_573 0 0 1 0 2 ABCF1 chr6:30545853 3'AG 30545853 Downstream 13bp 511 chr14 23235897 23235897 1 + C A GBM 23235894 + 23235874 23235914 41 CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCGGGCAAAATGG CTGCGCAGGCGCAAAAGCAAGTCATCTTCCGGGCAAAATGG < 41bp 1 0.324528759727007 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235894 chr14:23235897 nonsynonymous SNV 0.737 1 24 hm7G_associated_SNPs_574 0 0 1 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 77bp 512 chr19 54609280 54609280 1 + C T GBM 54609275 + 54609255 54609295 41 CCATTGAGCCCCTACTTCAAGTACTCCGTCATGATCAACAA CCATTGAGCCCCTACTTCAAGTACTTCGTCATGATCAACAA < 41bp 1 0.689585479344945 NA NA experiment 0.62082904131011 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609275 chr19:54609280 nonsynonymous SNV 0.001 1 26 hm7G_associated_SNPs_576 0 0 1 0 2 NDUFA3 chr19:54609241 3'AG 54609241 Downstream 40bp 513 chr19 54609280 54609280 1 + C T GBM 54609275 + 54609255 54609295 41 CCATTGAGCCCCTACTTCAAGTACTCCGTCATGATCAACAA CCATTGAGCCCCTACTTCAAGTACTTCGTCATGATCAACAA < 41bp 1 0.689585479344945 NA NA experiment 0.62082904131011 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609275 chr19:54609280 nonsynonymous SNV 0.001 1 26 hm7G_associated_SNPs_576 0 0 1 0 2 NDUFA3 chr19:54609318 5'GT 54609318 Upstream 39bp 514 chr19 39944022 39944022 1 + G A GBM 39944009 + 39943989 39944029 41 CCTGTAGGTAGACGAAGAGCGGCGGAGTGCAGCGGGCAGTG CCTGTAGGTAGACGAAGAGCGGCGGAGTGCAGCAGGCAGTG < 41bp 1 0.660286538884233 NA NA experiment 0.679426922231534 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944009 chr19:39944022 synonymous SNV . 0 34 hm7G_associated_SNPs_577 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 27bp 515 chr19 39944022 39944022 1 + G A GBM 39944010 + 39943990 39944030 41 CTGTAGGTAGACGAAGAGCGGCGGAGTGCAGCGGGCAGTGA CTGTAGGTAGACGAAGAGCGGCGGAGTGCAGCAGGCAGTGA < 41bp 1 0.629866988191824 NA NA experiment 0.740266023616352 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944010 chr19:39944022 synonymous SNV . 0 33 hm7G_associated_SNPs_578 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 27bp 516 chr17 79990839 79990839 1 + G A GBM 79990822 + 79990802 79990842 41 AGGTCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTT AGGTCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTACTT < 41bp 1 0.385483755591874 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990822 chr17:79990839 nonsynonymous SNV 1.000 4 38 hm7G_associated_SNPs_579 0 0 1 0 2 RAC3 chr17:79990823 3'AG 79990823 Downstream 17bp 517 chr17 79990839 79990839 1 + G A GBM 79990822 + 79990802 79990842 41 AGGTCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTGCTT AGGTCCCACCTTTTTCCCAAGGACGTCTTTCTGATCTACTT < 41bp 1 0.385483755591874 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990822 chr17:79990839 nonsynonymous SNV 1.000 4 38 hm7G_associated_SNPs_579 0 0 1 0 2 RAC3 chr17:79990885 5'GT 79990885 Upstream 47bp 518 chr19 50270423 50270423 1 + G A GBM 50270408 + 50270388 50270428 41 ATCATGCCGGCCGTGTCCAAGGGCGATGGGATGCGGGGGCT ATCATGCCGGCCGTGTCCAAGGGCGATGGGATGCGAGGGCT < 41bp 1 0.765351758996017 NA NA experiment 0.469296482007965 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50270408 chr19:50270423 synonymous SNV . 0 36 hm7G_associated_SNPs_580 0 0 1 0 1 AP2A1 chr19:50270457 5'GT 50270457 Upstream 35bp 519 chr19 50338286 50338286 1 + G A GBM 50338272 + 50338252 50338292 41 GTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCGTGCT GTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCACGTGCT < 41bp 1 0.644926932042763 NA NA experiment 0.710146135914473 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338272 chr19:50338286 nonsynonymous SNV 0.802 5 35 hm7G_associated_SNPs_581 0 0 0 0 1 MED25 chr19:50338243 3'AG 50338243 Downstream 44bp 520 chr16 2258825 2258825 1 + G A GBM 2258812 + 2258792 2258832 41 GTGGAGACTGGAGAGATCAAGAGAGAGTATGGCGGCCACCA GTGGAGACTGGAGAGATCAAGAGAGAGTATGGCAGCCACCA < 41bp 1 0.723774502261077 NA NA experiment 0.552450995477846 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258812 chr16:2258825 nonsynonymous SNV 0.995 3 34 hm7G_associated_SNPs_582 0 0 1 0 1 MLST8 chr16:2258760 3'AG 2258760 Downstream 66bp 521 chr4 54324856 54324856 1 + A C GBM 54324870 + 54324850 54324890 41 TGCAGAAAGAGGTTATGAGCGTCACAGAGCAAGTCGAGAAA TGCAGACAGAGGTTATGAGCGTCACAGAGCAAGTCGAGAAA < 41bp 1 0.496276227405917 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FIP1L1 ENSG00000145216 CDS Human protein_coding chr4:54324870 chr4:54324856 nonsynonymous SNV 0.989 0 7 hm7G_associated_SNPs_584 0 0 1 1 1 FIP1L1 chr4:54324820 3'AG 54324820 Downstream 37bp 522 chr17 45741578 45741578 1 + A G GBM 45741573 + 45741553 45741593 41 TTGATGAGGTGGCTTTACAAGGGATAGAATTCTGGTCCAAT TTGATGAGGTGGCTTTACAAGGGATGGAATTCTGGTCCAAT < 41bp 1 0.66851981343406 NA NA experiment 0.66296037313188 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45741573 chr17:45741578 nonsynonymous SNV 1.000 1 26 hm7G_associated_SNPs_586 0 0 1 0 2 KPNB1 chr17:45741525 3'AG 45741525 Downstream 54bp 523 chr17 45741578 45741578 1 + A G GBM 45741573 + 45741553 45741593 41 TTGATGAGGTGGCTTTACAAGGGATAGAATTCTGGTCCAAT TTGATGAGGTGGCTTTACAAGGGATGGAATTCTGGTCCAAT < 41bp 1 0.66851981343406 NA NA experiment 0.66296037313188 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45741573 chr17:45741578 nonsynonymous SNV 1.000 1 26 hm7G_associated_SNPs_586 0 0 1 0 2 KPNB1 chr17:45741635 5'GT 45741635 Upstream 58bp 524 chr19 19431858 19431858 1 + G A HNSC 19431842 + 19431822 19431862 41 CAGGCCGTGTTCCCCTTCAAGCCGCCGCAGCGCATCGAGGC CAGGCCGTGTTCCCCTTCAAGCCGCCGCAGCGCATCAAGGC < 41bp 1 0.505260253033823 NA NA experiment 0.989479493932354 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MAU2 ENSG00000129933 CDS Human protein_coding chr19:19431842 chr19:19431858 nonsynonymous SNV 1.000 2 37 hm7G_associated_SNPs_589 0 0 1 0 1 MAU2 chr19:19431944 5'GT 19431944 Upstream 87bp 525 chr1 76253192 76253192 1 + A G HNSC 76253211 + 76253191 76253231 41 CAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTT CGGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTT < 41bp 1 0.57717007951776 NA NA experiment 0.84565984096448 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253211 chr1:76253192 nonsynonymous SNV 0.936 1 2 hm7G_associated_SNPs_592 0 0 1 0 2 RABGGTB chr1:76253182 3'AG 76253182 Downstream 11bp 526 chr1 76253192 76253192 1 + A G HNSC 76253211 + 76253191 76253231 41 CAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTT CGGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTT < 41bp 1 0.57717007951776 NA NA experiment 0.84565984096448 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253211 chr1:76253192 nonsynonymous SNV 0.936 1 2 hm7G_associated_SNPs_592 0 0 1 0 2 RABGGTB chr1:76253289 5'GT 76253289 Upstream 98bp 527 chr22 24135759 24135759 1 + G T HNSC 24135752 + 24135732 24135772 41 TTTGTCTGTTACAGATCACGGATACACGACTCTAGCCACCA TTTGTCTGTTACAGATCACGGATACACTACTCTAGCCACCA < 41bp 1 0.45153493412671 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SMARCB1 ENSG00000099956 CDS Human protein_coding chr22:24135752 chr22:24135759 synonymous SNV . 0 28 hm7G_associated_SNPs_594 0 0 1 0 1 SMARCB1 chr22:24135746 3'AG 24135746 Downstream 14bp 528 chr1 151237331 151237331 1 + C T HNSC 151237343 + 151237323 151237363 41 CGACAAGGCAAGAATCACAAGATGCGCATCATTGCCTTTGT CGACAAGGTAAGAATCACAAGATGCGCATCATTGCCTTTGT < 41bp 1 0.696828086570517 NA NA experiment 0.606343826858966 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237343 chr1:151237331 synonymous SNV . 0 9 hm7G_associated_SNPs_595 0 0 1 0 2 PSMD4 chr1:151237308 3'AG 151237308 Downstream 24bp 529 chr1 151237331 151237331 1 + C T HNSC 151237343 + 151237323 151237363 41 CGACAAGGCAAGAATCACAAGATGCGCATCATTGCCTTTGT CGACAAGGTAAGAATCACAAGATGCGCATCATTGCCTTTGT < 41bp 1 0.696828086570517 NA NA experiment 0.606343826858966 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237343 chr1:151237331 synonymous SNV . 0 9 hm7G_associated_SNPs_595 0 0 1 0 2 PSMD4 chr1:151237394 5'GT 151237394 Upstream 64bp 530 chr1 156100425 156100425 1 + G C HNSC 156100417 + 156100397 156100437 41 CTCTTCTTTAGCAATACCAAGAAGGAGGGTGACCTGATAGC CTCTTCTTTAGCAATACCAAGAAGGAGGCTGACCTGATAGC < 41bp 1 0.731299987263877 NA NA experiment 0.537400025472247 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment LMNA ENSG00000160789 CDS Human protein_coding chr1:156100417 chr1:156100425 nonsynonymous SNV 0.853 2 29 hm7G_associated_SNPs_596 0 0 1 0 1 LMNA chr1:156100408 3'AG 156100408 Downstream 18bp 531 chr16 29994909 29994909 1 + C T HNSC 29994923 + 29994903 29994943 41 CCACTTCCACCACCTCTTCCGCCCGCCGCCGGGCCTACTGC CCACTTTCACCACCTCTTCCGCCCGCCGCCGGGCCTACTGC < 41bp 1 0.490215673942318 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994923 chr16:29994909 nonsynonymous SNV 0.545 1 7 hm7G_associated_SNPs_597 0 0 1 0 2 TAOK2 chr16:29994824 3'AG 29994824 Downstream 86bp 532 chr16 29994909 29994909 1 + C T HNSC 29994923 + 29994903 29994943 41 CCACTTCCACCACCTCTTCCGCCCGCCGCCGGGCCTACTGC CCACTTTCACCACCTCTTCCGCCCGCCGCCGGGCCTACTGC < 41bp 1 0.490215673942318 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994923 chr16:29994909 nonsynonymous SNV 0.545 1 7 hm7G_associated_SNPs_597 0 0 1 0 2 TAOK2 chr16:29994985 5'GT 29994985 Upstream 77bp 533 chr6 29693278 29693278 1 + T C HNSC 29693262 + 29693242 29693282 41 CCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTT CCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGCCCTT < 41bp 1 0.207840521910661 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HLA-F ENSG00000204642 CDS Human protein_coding chr6:29693262 chr6:29693278 nonsynonymous SNV 0.003 1 37 hm7G_associated_SNPs_598 0 0 1 0 2 HLA-F chr6:29693224 3'AG 29693224 Downstream 55bp 534 chr6 29693278 29693278 1 + T C HNSC 29693262 + 29693242 29693282 41 CCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTT CCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGCCCTT < 41bp 1 0.207840521910661 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HLA-F ENSG00000204642 CDS Human protein_coding chr6:29693262 chr6:29693278 nonsynonymous SNV 0.003 1 37 hm7G_associated_SNPs_598 0 0 1 0 2 HLA-F chr6:29693340 5'GT 29693340 Upstream 63bp 535 chr17 36912171 36912171 1 + A T HNSC 36912151 + 36912131 36912171 41 CTCAGTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGA CTCAGTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGT < 41bp 1 0.721775926327726 NA NA experiment 0.556448147344548 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMB3 ENSG00000108294 CDS Human other chr17:36912151 chr17:36912171 nonsynonymous SNV 0.995 1 41 hm7G_associated_SNPs_599 0 0 1 0 2 PSMB3 chr17:36912136 3'AG 36912136 Downstream 36bp 536 chr17 36912171 36912171 1 + A T HNSC 36912151 + 36912131 36912171 41 CTCAGTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGA CTCAGTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGT < 41bp 1 0.721775926327726 NA NA experiment 0.556448147344548 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMB3 ENSG00000108294 CDS Human other chr17:36912151 chr17:36912171 nonsynonymous SNV 0.995 1 41 hm7G_associated_SNPs_599 0 0 1 0 2 PSMB3 chr17:36912243 5'GT 36912243 Upstream 73bp 537 chr6 33170386 33170386 1 + A G HNSC 33170388 + 33170368 33170408 41 GGAAGAAGAAAAGGAAACAAGAGGGGTTCAGAAGAGGCGAG GGAAGAAGAAAAGGAAACGAGAGGGGTTCAGAAGAGGCGAG < 41bp 1 0.589681809559907 NA NA experiment 0.820636380880185 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33170388 chr6:33170386 synonymous SNV . 0 19 hm7G_associated_SNPs_600 0 0 1 0 2 SLC39A7 chr6:33170337 3'AG 33170337 Downstream 50bp 538 chr6 33170386 33170386 1 + A G HNSC 33170388 + 33170368 33170408 41 GGAAGAAGAAAAGGAAACAAGAGGGGTTCAGAAGAGGCGAG GGAAGAAGAAAAGGAAACGAGAGGGGTTCAGAAGAGGCGAG < 41bp 1 0.589681809559907 NA NA experiment 0.820636380880185 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33170388 chr6:33170386 synonymous SNV . 0 19 hm7G_associated_SNPs_600 0 0 1 0 2 SLC39A7 chr6:33170477 5'GT 33170477 Upstream 92bp 539 chr14 23235906 23235906 1 + G A HNSC 23235894 + 23235874 23235914 41 CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCGGGCAAAATGG CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCGGACAAAATGG < 41bp 1 0.273570909697264 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235894 chr14:23235906 nonsynonymous SNV 0.836 0 33 hm7G_associated_SNPs_601 0 0 1 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 68bp 540 chr11 63965417 63965417 1 + A G HNSC 63965398 + 63965378 63965418 41 GCCATCCATTTCTATAACAAGTCTCTGGCAGAGCACCGAAC GCCATCCATTTCTATAACAAGTCTCTGGCAGAGCACCGAGC < 41bp 1 0.793986900744749 NA NA experiment 0.412026198510501 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965398 chr11:63965417 nonsynonymous SNV 1.000 3 40 hm7G_associated_SNPs_602 0 0 1 0 2 STIP1 chr11:63965326 3'AG 63965326 Downstream 92bp 541 chr11 63965417 63965417 1 + A G HNSC 63965398 + 63965378 63965418 41 GCCATCCATTTCTATAACAAGTCTCTGGCAGAGCACCGAAC GCCATCCATTTCTATAACAAGTCTCTGGCAGAGCACCGAGC < 41bp 1 0.793986900744749 NA NA experiment 0.412026198510501 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965398 chr11:63965417 nonsynonymous SNV 1.000 3 40 hm7G_associated_SNPs_602 0 0 1 0 2 STIP1 chr11:63965446 5'GT 63965446 Upstream 30bp 542 chr1 151238835 151238835 1 + G A HNSC 151238825 + 151238805 151238845 41 AGATGACCATCAGCCAGCAAGAGTTTGGCCGCACTGGGCTT AGATGACCATCAGCCAGCAAGAGTTTGGCCACACTGGGCTT < 41bp 1 0.772455391705739 NA NA experiment 0.455089216588521 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151238825 chr1:151238835 nonsynonymous SNV 0.962 0 31 hm7G_associated_SNPs_603 0 0 1 0 2 PSMD4 chr1:151238784 3'AG 151238784 Downstream 52bp 543 chr1 151238835 151238835 1 + G A HNSC 151238825 + 151238805 151238845 41 AGATGACCATCAGCCAGCAAGAGTTTGGCCGCACTGGGCTT AGATGACCATCAGCCAGCAAGAGTTTGGCCACACTGGGCTT < 41bp 1 0.772455391705739 NA NA experiment 0.455089216588521 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151238825 chr1:151238835 nonsynonymous SNV 0.962 0 31 hm7G_associated_SNPs_603 0 0 1 0 2 PSMD4 chr1:151238915 5'GT 151238915 Upstream 81bp 544 chr19 59061843 59061843 1 + G C HNSC 59061824 + 59061804 59061844 41 GAGGCCTTCGGTGACACCAAGTTCTCTGCTGTGCTGGTGGA GAGGCCTTCGGTGACACCAAGTTCTCTGCTGTGCTGGTGCA < 41bp 1 0.752100340883154 NA NA experiment 0.495799318233693 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59061824 chr19:59061843 nonsynonymous SNV 0.863 4 40 hm7G_associated_SNPs_604 0 0 1 0 1 TRIM28 chr19:59061744 3'AG 59061744 Downstream 100bp 545 chr6 43096755 43096755 1 + C T HNSC 43096743 + 43096723 43096763 41 ACAGCCATTGTCTTCATCAAGCAGCCGTCCTCCCAGGATGC ACAGCCATTGTCTTCATCAAGCAGCCGTCCTCTCAGGATGC < 41bp 1 0.506434772786821 NA NA experiment 0.987130454426357 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096743 chr6:43096755 synonymous SNV . 0 33 hm7G_associated_SNPs_606 0 0 1 0 1 PTK7 chr6:43096715 3'AG 43096715 Downstream 41bp 546 chr22 42477982 42477982 1 + C T HNSC 42478000 + 42477980 42478020 41 GTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGA GTTGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGA < 41bp 1 0.659883554557288 NA NA experiment 0.680232890885423 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMDT1 ENSG00000183172 CDS Human protein_coding chr22:42478000 chr22:42477982 synonymous SNV . 0 3 hm7G_associated_SNPs_607 0 0 1 0 2 SMDT1 chr22:42477929 3'AG 42477929 Downstream 54bp 547 chr22 42477982 42477982 1 + C T HNSC 42478000 + 42477980 42478020 41 GTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGA GTTGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGA < 41bp 1 0.659883554557288 NA NA experiment 0.680232890885423 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMDT1 ENSG00000183172 CDS Human protein_coding chr22:42478000 chr22:42477982 synonymous SNV . 0 3 hm7G_associated_SNPs_607 0 0 1 0 2 SMDT1 chr22:42478069 5'GT 42478069 Upstream 88bp 548 chr12 104337038 104337038 1 + G T HNSC 104337030 + 104337010 104337050 41 TGAGAAAACTAAGGAGAGTCGTGAAGCAGTTGAGAAAGAAT TGAGAAAACTAAGGAGAGTCGTGAAGCATTTGAGAAAGAAT < 41bp 1 0.714424655523114 NA NA experiment 0.571150688953772 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104337030 chr12:104337038 nonsynonymous SNV 0.952 1 29 hm7G_associated_SNPs_608 0 0 1 0 1 HSP90B1 chr12:104337097 5'GT 104337097 Upstream 60bp 549 chr9 131388879 131388879 1 + G C HNSC 131388873 + 131388853 131388893 41 CTGGCCGAGCTGGACCGCCAGATCAAGAGCTTCCGCGTAGC CTGGCCGAGCTGGACCGCCAGATCAACAGCTTCCGCGTAGC < 41bp 1 0.478046416054908 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131388873 chr9:131388879 nonsynonymous SNV 1.000 4 27 hm7G_associated_SNPs_609 0 0 1 0 1 SPTAN1 chr9:131388966 5'GT 131388966 Upstream 88bp 550 chr2 27448088 27448088 1 + G A HNSC 27448068 + 27448048 27448088 41 TGCCAGAATGGCAGAGATCGGAGAGCATGTGGCCCCGAGCG TGCCAGAATGGCAGAGATCGGAGAGCATGTGGCCCCGAGCA < 41bp 1 0.568718966125909 NA NA experiment 0.862562067748181 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448068 chr2:27448088 nonsynonymous SNV 0.971 2 41 hm7G_associated_SNPs_611 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 24bp 551 chr17 79658578 79658578 1 + G A HNSC 79658568 + 79658548 79658588 41 TGGCATCGAGAAGGAGGTGCGCGTGTGTGAGCCCTGCTACG TGGCATCGAGAAGGAGGTGCGCGTGTGTGAACCCTGCTACG < 41bp 1 0.773780600509101 NA NA experiment 0.452438798981799 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79658568 chr17:79658578 synonymous SNV . 0 31 hm7G_associated_SNPs_613 0 0 1 0 1 HGS chr17:79658601 5'GT 79658601 Upstream 24bp 552 chr10 17277252 17277252 1 + C T HNSC 17277237 + 17277217 17277257 41 TTGAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAG TTGAAGCTGCTAACTACCAAGACACTATTGGCCGCTTGCAG < 41bp 1 0.737654458729829 NA NA experiment 0.524691082540342 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment VIM ENSG00000026025 CDS Human protein_coding chr10:17277237 chr10:17277252 synonymous SNV . 0 36 hm7G_associated_SNPs_615 0 0 1 1 1 VIM chr10:17277168 3'AG 17277168 Downstream 85bp 553 chr11 65827009 65827009 1 + G T HNSC 65827018 + 65826998 65827038 41 GAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCGCCGAATGAA GAAGCCCCCAATCTGTCCAAGAAGAAGTTGCGCCGAATGAA < 41bp 1 0.777786272496304 NA NA experiment 0.444427455007393 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827018 chr11:65827009 nonsynonymous SNV 0.980 4 12 hm7G_associated_SNPs_616 0 0 1 0 2 SF3B2 chr11:65826986 3'AG 65826986 Downstream 24bp 554 chr11 65827009 65827009 1 + G T HNSC 65827018 + 65826998 65827038 41 GAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCGCCGAATGAA GAAGCCCCCAATCTGTCCAAGAAGAAGTTGCGCCGAATGAA < 41bp 1 0.777786272496304 NA NA experiment 0.444427455007393 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827018 chr11:65827009 nonsynonymous SNV 0.980 4 12 hm7G_associated_SNPs_616 0 0 1 0 2 SF3B2 chr11:65827066 5'GT 65827066 Upstream 58bp 555 chr17 7851510 7851510 1 + C T HNSC 7851513 + 7851493 7851533 41 CTTGGGAGGAAGCCCCTCAAGTGCCACGTATTCCACCGCCT CTTGGGAGGAAGCCCCTTAAGTGCCACGTATTCCACCGCCT < 41bp 1 0.414660959103667 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CNTROB ENSG00000170037 CDS Human protein_coding chr17:7851513 chr17:7851510 stopgain 0.995 0 18 hm7G_associated_SNPs_617 0 0 1 0 1 CNTROB chr17:7851475 3'AG 7851475 Downstream 36bp 556 chr10 75530092 75530092 1 + G A HNSC 75530096 + 75530076 75530116 41 AGTTCGAGCCTCTGAAGAGCGTCTAAGCAATGGGGATATAT AGTTCGAGCCTCTGAAAAGCGTCTAAGCAATGGGGATATAT < 41bp 1 0.629387002228604 NA NA experiment 0.741225995542791 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75530096 chr10:75530092 nonsynonymous SNV 1.000 2 17 hm7G_associated_SNPs_618 0 0 1 0 1 SEC24C chr10:75530038 3'AG 75530038 Downstream 55bp 557 chr14 23235899 23235899 1 + C T HNSC 23235894 + 23235874 23235914 41 CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCGGGCAAAATGG CTGCGCAGGCGCAAAAGCAAGTCCTTTTCCGGGCAAAATGG < 41bp 1 0.281597398528183 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235894 chr14:23235899 nonsynonymous SNV 0.826 1 26 hm7G_associated_SNPs_619 0 0 1 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 75bp 558 chr20 57485057 57485057 1 + C T KIRC 57485045 + 57485025 57485065 41 GTGATCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAA GTGATCCTGTTCCTCAACAAGCAAGATCTGCTTGCTGAGAA < 41bp 1 0.611503109139878 NA NA experiment 0.776993781720244 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485045 chr20:57485057 synonymous SNV . 0 33 hm7G_associated_SNPs_621 0 0 1 4 2 GNAS chr20:57485006 3'AG 57485006 Downstream 52bp 559 chr20 57485057 57485057 1 + C T KIRC 57485045 + 57485025 57485065 41 GTGATCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAA GTGATCCTGTTCCTCAACAAGCAAGATCTGCTTGCTGAGAA < 41bp 1 0.611503109139878 NA NA experiment 0.776993781720244 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485045 chr20:57485057 synonymous SNV . 0 33 hm7G_associated_SNPs_621 0 0 1 4 2 GNAS chr20:57485136 5'GT 57485136 Upstream 80bp 560 chr20 57485057 57485057 1 + C T KIRC 57485049 + 57485029 57485069 41 TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAAGTC TCCTGTTCCTCAACAAGCAAGATCTGCTTGCTGAGAAAGTC < 41bp 1 0.575005359117826 NA NA experiment 0.849989281764348 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485049 chr20:57485057 synonymous SNV . 0 29 hm7G_associated_SNPs_622 0 0 1 4 2 GNAS chr20:57485006 3'AG 57485006 Downstream 52bp 561 chr20 57485057 57485057 1 + C T KIRC 57485049 + 57485029 57485069 41 TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAAGTC TCCTGTTCCTCAACAAGCAAGATCTGCTTGCTGAGAAAGTC < 41bp 1 0.575005359117826 NA NA experiment 0.849989281764348 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485049 chr20:57485057 synonymous SNV . 0 29 hm7G_associated_SNPs_622 0 0 1 4 2 GNAS chr20:57485136 5'GT 57485136 Upstream 80bp 562 chr22 41914522 41914522 1 + G A KIRC 41914513 + 41914493 41914533 41 AATCTAGCTGATGAATTCAAGGATCACTTGGTGCCTGACCC AATCTAGCTGATGAATTCAAGGATCACTTAGTGCCTGACCC < 41bp 1 0.691621587765392 NA NA experiment 0.616756824469216 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ACO2 ENSG00000100412 CDS Human protein_coding chr22:41914513 chr22:41914522 synonymous SNV . 0 30 hm7G_associated_SNPs_623 0 0 1 0 2 ACO2 chr22:41914485 3'AG 41914485 Downstream 38bp 563 chr22 41914522 41914522 1 + G A KIRC 41914513 + 41914493 41914533 41 AATCTAGCTGATGAATTCAAGGATCACTTGGTGCCTGACCC AATCTAGCTGATGAATTCAAGGATCACTTAGTGCCTGACCC < 41bp 1 0.691621587765392 NA NA experiment 0.616756824469216 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ACO2 ENSG00000100412 CDS Human protein_coding chr22:41914513 chr22:41914522 synonymous SNV . 0 30 hm7G_associated_SNPs_623 0 0 1 0 2 ACO2 chr22:41914576 5'GT 41914576 Upstream 55bp 564 chr2 204267389 204267389 1 + C A KIRC 204267380 + 204267360 204267400 41 AGGGGGCTCGTTGCCCTATAGACGCCCTCCTTCCATTACTT AGGGGGCTCGTTGCCCTATAGACGCCCTCATTCCATTACTT < 41bp 1 0.287437496810012 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204267380 chr2:204267389 nonsynonymous SNV 1.000 4 30 hm7G_associated_SNPs_624 0 0 1 0 2 ABI2 chr2:204267299 3'AG 204267299 Downstream 91bp 565 chr2 204267389 204267389 1 + C A KIRC 204267380 + 204267360 204267400 41 AGGGGGCTCGTTGCCCTATAGACGCCCTCCTTCCATTACTT AGGGGGCTCGTTGCCCTATAGACGCCCTCATTCCATTACTT < 41bp 1 0.287437496810012 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204267380 chr2:204267389 nonsynonymous SNV 1.000 4 30 hm7G_associated_SNPs_624 0 0 1 0 2 ABI2 chr2:204267457 5'GT 204267457 Upstream 69bp 566 chr5 154330404 154330404 1 + A T KIRC 154330410 + 154330390 154330430 41 TCAATCATATATCCACACAAGTGCTTCTCTTGACATTTCTC TCAATCATATATCCTCACAAGTGCTTCTCTTGACATTTCTC < 41bp 1 0.253013064215661 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154330410 chr5:154330404 nonsynonymous SNV 0.771 1 15 hm7G_associated_SNPs_625 0 0 1 0 1 MRPL22 chr5:154330498 5'GT 154330498 Upstream 95bp 567 chr20 35832332 35832332 1 + C G KIRC 35832349 + 35832329 35832369 41 AGGCTGACCTGAGGAGCATCGTGGAGGAGATTGAGGTGTGA AGGGTGACCTGAGGAGCATCGTGGAGGAGATTGAGGTGTGA < 41bp 1 0.726439049197804 NA NA experiment 0.547121901604392 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35832349 chr20:35832332 nonsynonymous SNV 1.000 3 4 hm7G_associated_SNPs_626 0 0 1 0 2 RPN2 chr20:35832288 3'AG 35832288 Downstream 45bp 568 chr20 35832332 35832332 1 + C G KIRC 35832349 + 35832329 35832369 41 AGGCTGACCTGAGGAGCATCGTGGAGGAGATTGAGGTGTGA AGGGTGACCTGAGGAGCATCGTGGAGGAGATTGAGGTGTGA < 41bp 1 0.726439049197804 NA NA experiment 0.547121901604392 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35832349 chr20:35832332 nonsynonymous SNV 1.000 3 4 hm7G_associated_SNPs_626 0 0 1 0 2 RPN2 chr20:35832363 5'GT 35832363 Upstream 32bp 569 chr1 228285075 228285075 1 + A C KIRC 228285071 + 228285051 228285091 41 GTGGAAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTG GTGGAAACCGTGGAGTACAAGAACCTCAGCTTCACTGTGTG < 41bp 1 0.664095327740732 NA NA experiment 0.671809344518535 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228285071 chr1:228285075 nonsynonymous SNV 0.999 2 25 hm7G_associated_SNPs_627 0 0 1 0 1 ARF1 chr1:228285153 5'GT 228285153 Upstream 79bp 570 chr20 1144992 1144992 1 + C T KIRC 1145012 + 1144992 1145032 41 CCTGAGATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCT TCTGAGATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCT < 41bp 1 0.610902860854117 NA NA experiment 0.778194278291765 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1145012 chr20:1144992 synonymous SNV . 0 1 hm7G_associated_SNPs_628 0 0 1 0 1 PSMF1 chr20:1144962 3'AG 1144962 Downstream 31bp 571 chr19 50881832 50881832 1 + G C KIRC 50881828 + 50881808 50881848 41 AAGAAGATTCGGAAACAGCAGCAGGAGTCACAGTCACAGTC AAGAAGATTCGGAAACAGCAGCAGCAGTCACAGTCACAGTC < 41bp 1 0.66492711253128 NA NA experiment 0.670145774937441 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881828 chr19:50881832 nonsynonymous SNV 0.550 1 25 hm7G_associated_SNPs_629 0 0 1 0 1 NR1H2 chr19:50881779 3'AG 50881779 Downstream 54bp 572 chr22 38274117 38274117 1 + G T KIRC 38274104 + 38274084 38274124 41 AACACAAGATGAAGAACCTCGTGTGGACCAGCGGTATCTCA AACACAAGATGAAGAACCTCGTGTGGACCAGCGTTATCTCA < 41bp 1 0.553734348068655 NA NA experiment 0.892531303862689 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38274104 chr22:38274117 nonsynonymous SNV 0.685 4 34 hm7G_associated_SNPs_631 0 0 1 0 1 EIF3L chr22:38274178 5'GT 38274178 Upstream 62bp 573 chr16 712719 712719 1 + G T KIRC 712710 + 712690 712730 41 TGGAACACGAGCTGGTGCTGGACGGGGCTGTGGTGAGTGCC TGGAACACGAGCTGGTGCTGGACGGGGCTTTGGTGAGTGCC < 41bp 1 0.266411633379636 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712710 chr16:712719 nonsynonymous SNV 0.002 1 30 hm7G_associated_SNPs_632 0 0 1 0 2 WDR90 chr16:712673 3'AG 712673 Downstream 47bp 574 chr16 712719 712719 1 + G T KIRC 712710 + 712690 712730 41 TGGAACACGAGCTGGTGCTGGACGGGGCTGTGGTGAGTGCC TGGAACACGAGCTGGTGCTGGACGGGGCTTTGGTGAGTGCC < 41bp 1 0.266411633379636 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712710 chr16:712719 nonsynonymous SNV 0.002 1 30 hm7G_associated_SNPs_632 0 0 1 0 2 WDR90 chr16:712679 3'AG 712679 Downstream 41bp 575 chr1 76253203 76253203 1 + A G KIRP 76253211 + 76253191 76253231 41 CAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTT CAGAAGGATGTTGTTATCAAGTCAGATGCACCGGACACTTT < 41bp 1 0.63484723592099 NA NA experiment 0.730305528158019 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253211 chr1:76253203 nonsynonymous SNV 0.927 0 13 hm7G_associated_SNPs_633 0 0 1 0 2 RABGGTB chr1:76253182 3'AG 76253182 Downstream 22bp 576 chr1 76253203 76253203 1 + A G KIRP 76253211 + 76253191 76253231 41 CAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTT CAGAAGGATGTTGTTATCAAGTCAGATGCACCGGACACTTT < 41bp 1 0.63484723592099 NA NA experiment 0.730305528158019 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253211 chr1:76253203 nonsynonymous SNV 0.927 0 13 hm7G_associated_SNPs_633 0 0 1 0 2 RABGGTB chr1:76253289 5'GT 76253289 Upstream 87bp 577 chr19 11129655 11129655 1 + G A KIRP 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGGCGTACAAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA < 41bp 1 0.306875233094675 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129655 nonsynonymous SNV 0.928 5 10 hm7G_associated_SNPs_634 0 0 1 0 2 SMARCA4 chr19:11129633 3'AG 11129633 Downstream 23bp 578 chr19 11129655 11129655 1 + G A KIRP 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGGCGTACAAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA < 41bp 1 0.306875233094675 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129655 nonsynonymous SNV 0.928 5 10 hm7G_associated_SNPs_634 0 0 1 0 2 SMARCA4 chr19:11129699 5'GT 11129699 Upstream 45bp 579 chr1 156107474 156107474 1 + A C KIRP 156107462 + 156107442 156107482 41 CAGGAAGTGGCCATGCGCAAGCTGGTGCGCTCAGTGACTGT CAGGAAGTGGCCATGCGCAAGCTGGTGCGCTCCGTGACTGT < 41bp 1 0.774560992659586 NA NA experiment 0.450878014680829 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156107462 chr1:156107474 synonymous SNV . 0 33 hm7G_associated_SNPs_635 0 0 1 0 2 LMNA chr1:156107445 3'AG 156107445 Downstream 30bp 580 chr1 156107474 156107474 1 + A C KIRP 156107462 + 156107442 156107482 41 CAGGAAGTGGCCATGCGCAAGCTGGTGCGCTCAGTGACTGT CAGGAAGTGGCCATGCGCAAGCTGGTGCGCTCCGTGACTGT < 41bp 1 0.774560992659586 NA NA experiment 0.450878014680829 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156107462 chr1:156107474 synonymous SNV . 0 33 hm7G_associated_SNPs_635 0 0 1 0 2 LMNA chr1:156107534 5'GT 156107534 Upstream 61bp 581 chr16 2258824 2258824 1 + C T LGG 2258812 + 2258792 2258832 41 GTGGAGACTGGAGAGATCAAGAGAGAGTATGGCGGCCACCA GTGGAGACTGGAGAGATCAAGAGAGAGTATGGTGGCCACCA < 41bp 1 0.737442568527007 NA NA experiment 0.525114862945987 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258812 chr16:2258824 synonymous SNV . 0 33 hm7G_associated_SNPs_637 0 0 1 0 1 MLST8 chr16:2258760 3'AG 2258760 Downstream 65bp 582 chr2 217525369 217525369 1 + C T LGG 217525383 + 217525363 217525403 41 GCTGGCCGGAAGCCCCTCAAGTCGGGTATGAAGGAGCTGGC GCTGGCTGGAAGCCCCTCAAGTCGGGTATGAAGGAGCTGGC < 41bp 1 0.749460187554874 NA NA experiment 0.501079624890253 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment IGFBP2 ENSG00000115457 CDS Human protein_coding chr2:217525383 chr2:217525369 nonsynonymous SNV 0.868 3 7 hm7G_associated_SNPs_638 0 0 1 0 1 IGFBP2 chr2:217525280 3'AG 217525280 Downstream 90bp 583 chr3 39437925 39437925 1 + C T LGG 39437905 + 39437885 39437925 41 ATAGGACTATGGACTACGTGGCTTCTTCCAAGGTGGCATCC ATAGGACTATGGACTACGTGGCTTCTTCCAAGGTGGCATCT < 41bp 1 0.61645378514406 NA NA experiment 0.767092429711881 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39437905 chr3:39437925 nonsynonymous SNV 0.763 5 41 hm7G_associated_SNPs_639 0 0 1 0 1 SLC25A38 chr3:39437889 3'AG 39437889 Downstream 37bp 584 chr19 36631958 36631958 1 + C G LGG 36631963 + 36631943 36631983 41 CGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCCTGGGTGGGG CGGCGGCGGCGGCGGGGGGGGAGGCGGGGGCCTGGGTGGGG < 41bp 1 0.785644389968391 NA NA experiment 0.428711220063218 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36631963 chr19:36631958 synonymous SNV . 0 16 hm7G_associated_SNPs_641 0 0 1 0 2 CAPNS1 chr19:36631899 3'AG 36631899 Downstream 60bp 585 chr19 36631958 36631958 1 + C G LGG 36631963 + 36631943 36631983 41 CGGCGGCGGCGGCGGCGGGGGAGGCGGGGGCCTGGGTGGGG CGGCGGCGGCGGCGGGGGGGGAGGCGGGGGCCTGGGTGGGG < 41bp 1 0.785644389968391 NA NA experiment 0.428711220063218 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CAPNS1 ENSG00000126247 CDS Human protein_coding chr19:36631963 chr19:36631958 synonymous SNV . 0 16 hm7G_associated_SNPs_641 0 0 1 0 2 CAPNS1 chr19:36631902 3'AG 36631902 Downstream 57bp 586 chr3 184042726 184042726 1 + C T LGG 184042746 + 184042726 184042766 41 CGCTCTTTAGGGAATATCAAGTTTATTGGAGAGTTGTTCAA TGCTCTTTAGGGAATATCAAGTTTATTGGAGAGTTGTTCAA < 41bp 1 0.583245778862903 NA NA experiment 0.833508442274194 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042746 chr3:184042726 nonsynonymous SNV 1.000 2 1 hm7G_associated_SNPs_642 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 61bp 587 chr3 142720480 142720480 1 + A G LGG 142720470 + 142720450 142720490 41 GAAGGAGGGGCAAAGCTCAAGATGGCGGACAAAACGCCAGG GAAGGAGGGGCAAAGCTCAAGATGGCGGACGAAACGCCAGG < 41bp 1 0.711892090030368 NA NA experiment 0.576215819939264 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment U2SURP ENSG00000163714 CDS Human protein_coding chr3:142720470 chr3:142720480 nonsynonymous SNV 1.000 2 31 hm7G_associated_SNPs_643 0 0 1 0 1 U2SURP chr3:142720515 5'GT 142720515 Upstream 36bp 588 chr17 36912146 36912146 1 + C T LGG 36912151 + 36912131 36912171 41 CTCAGTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGA CTCAGTGCCCAGCGCTTCAAGTTCCGGCTGAACCTGTATGA < 41bp 1 0.724725956488565 NA NA experiment 0.550548087022871 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMB3 ENSG00000108294 CDS Human other chr17:36912151 chr17:36912146 nonsynonymous SNV 0.997 3 16 hm7G_associated_SNPs_644 0 0 1 0 2 PSMB3 chr17:36912136 3'AG 36912136 Downstream 11bp 589 chr17 36912146 36912146 1 + C T LGG 36912151 + 36912131 36912171 41 CTCAGTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGA CTCAGTGCCCAGCGCTTCAAGTTCCGGCTGAACCTGTATGA < 41bp 1 0.724725956488565 NA NA experiment 0.550548087022871 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMB3 ENSG00000108294 CDS Human other chr17:36912151 chr17:36912146 nonsynonymous SNV 0.997 3 16 hm7G_associated_SNPs_644 0 0 1 0 2 PSMB3 chr17:36912243 5'GT 36912243 Upstream 98bp 590 chr2 207027218 207027218 1 + G A LGG 207027232 + 207027212 207027252 41 GAACCTGCACTTGTTGCCAAGTCTTCCATCTTACTAGATGT GAACCTACACTTGTTGCCAAGTCTTCCATCTTACTAGATGT < 41bp 1 0.442244513579006 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207027232 chr2:207027218 nonsynonymous SNV 0.995 1 7 hm7G_associated_SNPs_645 0 0 1 0 1 EEF1B2 chr2:207027213 3'AG 207027213 Downstream 6bp 591 chr19 10782100 10782100 1 + G T LGG 10782115 + 10782095 10782135 41 GCAAAGGGCCTCCTACTCAAGGGGGACTTGGATCTGGAGCT GCAAATGGCCTCCTACTCAAGGGGGACTTGGATCTGGAGCT < 41bp 1 0.482237458343678 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10782115 chr19:10782100 nonsynonymous SNV 0.890 4 6 hm7G_associated_SNPs_646 0 0 1 0 1 ILF3 chr19:10782034 3'AG 10782034 Downstream 67bp 592 chr1 228284846 228284846 1 + G A LGG 228284845 + 228284825 228284865 41 ATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGA ATCTTCGCCAACCTCTTCAAGAGCCTTTTTGGCAAAAAAGA < 41bp 1 0.631303049942167 NA NA experiment 0.737393900115667 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228284845 chr1:228284846 nonsynonymous SNV 1.000 1 22 hm7G_associated_SNPs_647 0 0 1 0 1 ARF1 chr1:228284779 3'AG 228284779 Downstream 68bp 593 chr19 11145688 11145688 1 + C T LGG 11145685 + 11145665 11145705 41 CTCCCCTCGTGGATCATCAAGGACGACGCGGAGGTGGAGCG CTCCCCTCGTGGATCATCAAGGATGACGCGGAGGTGGAGCG < 41bp 1 0.615401055957217 NA NA experiment 0.769197888085566 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145685 chr19:11145688 synonymous SNV . 0 24 hm7G_associated_SNPs_649 1 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 99bp 594 chr11 43465045 43465045 1 + C T LGG 43465039 + 43465019 43465059 41 GGCGGCGTCTAGACTTACAAGGAATACGGGTGCTGAAGAAA GGCGGCGTCTAGACTTACAAGGAATATGGGTGCTGAAGAAA < 41bp 1 0.571815869949925 NA NA experiment 0.856368260100151 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465039 chr11:43465045 nonsynonymous SNV 0.941 4 27 hm7G_associated_SNPs_650 0 0 1 0 1 TTC17 chr11:43465134 5'GT 43465134 Upstream 90bp 595 chr3 184042736 184042736 1 + G A LGG 184042746 + 184042726 184042766 41 CGCTCTTTAGGGAATATCAAGTTTATTGGAGAGTTGTTCAA CGCTCTTTAGAGAATATCAAGTTTATTGGAGAGTTGTTCAA < 41bp 1 0.529696600908539 NA NA experiment 0.940606798182922 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184042746 chr3:184042736 nonsynonymous SNV 1.000 4 11 hm7G_associated_SNPs_651 0 0 1 0 1 EIF4G1 chr3:184042666 3'AG 184042666 Downstream 71bp 596 chr12 131359156 131359156 1 + C T LIHC 131359140 + 131359120 131359160 41 ACATCGAGAGTTACTTACAAGAATGTGCCTAACTGGCATAG ACATCGAGAGTTACTTACAAGAATGTGCCTAACTGGTATAG < 41bp 1 0.775533543484696 NA NA experiment 0.448932913030607 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control RAN ENSG00000132341 CDS Human protein_coding chr12:131359140 chr12:131359156 nonsynonymous SNV 1.000 1 37 hm7G_associated_SNPs_653 0 0 1 0 1 RAN chr12:131359091 3'AG 131359091 Downstream 66bp 597 chr22 45970437 45970437 1 + C T LIHC 45970430 + 45970410 45970450 41 GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACGATGT GACACGGTCCGCTGCATCAAGTCCTGCTGCCCCAACGATGT < 41bp 1 0.352510291145794 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45970430 chr22:45970437 nonsynonymous SNV 0.992 1 28 hm7G_associated_SNPs_654 0 0 0 0 2 FBLN1 chr22:45970391 3'AG 45970391 Downstream 47bp 598 chr22 45970437 45970437 1 + C T LIHC 45970430 + 45970410 45970450 41 GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACGATGT GACACGGTCCGCTGCATCAAGTCCTGCTGCCCCAACGATGT < 41bp 1 0.352510291145794 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45970430 chr22:45970437 nonsynonymous SNV 0.992 1 28 hm7G_associated_SNPs_654 0 0 0 0 2 FBLN1 chr22:45970533 5'GT 45970533 Upstream 97bp 599 chr1 46083194 46083194 1 + G A LIHC 46083189 + 46083169 46083209 41 ATGCAAAGAAAGCCAAACAAGAGCCGGAGGTGAACGGAGGC ATGCAAAGAAAGCCAAACAAGAGCCAGAGGTGAACGGAGGC < 41bp 1 0.766161022822835 NA NA experiment 0.467677954354329 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NASP ENSG00000132780 CDS Human protein_coding chr1:46083189 chr1:46083194 synonymous SNV . 0 26 hm7G_associated_SNPs_655 0 0 1 0 2 NASP chr1:46083135 3'AG 46083135 Downstream 60bp 600 chr1 46083194 46083194 1 + G A LIHC 46083189 + 46083169 46083209 41 ATGCAAAGAAAGCCAAACAAGAGCCGGAGGTGAACGGAGGC ATGCAAAGAAAGCCAAACAAGAGCCAGAGGTGAACGGAGGC < 41bp 1 0.766161022822835 NA NA experiment 0.467677954354329 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NASP ENSG00000132780 CDS Human protein_coding chr1:46083189 chr1:46083194 synonymous SNV . 0 26 hm7G_associated_SNPs_655 0 0 1 0 2 NASP chr1:46083263 5'GT 46083263 Upstream 70bp 601 chr1 28856384 28856384 1 + A G LIHC 28856390 + 28856370 28856410 41 GACAGGAAGATGTCACCCAAGCGCATAGCTAAAAGAAGGTC GACAGGAAGATGTCGCCCAAGCGCATAGCTAAAAGAAGGTC < 41bp 1 0.736344792372839 NA NA experiment 0.527310415254322 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RCC1 ENSG00000180198 CDS Human protein_coding chr1:28856390 chr1:28856384 synonymous SNV . 0 15 hm7G_associated_SNPs_656 0 0 1 0 1 RCC1 chr1:28856370 3'AG 28856370 Downstream 15bp 602 chr17 57808810 57808810 1 + G T LIHC 57808790 + 57808770 57808810 41 TTGCTGTATTAGCTCCTCAAGAGTTACTGATCTATGAAATG TTGCTGTATTAGCTCCTCAAGAGTTACTGATCTATGAAATT < 41bp 1 0.663589582200751 NA NA experiment 0.672820835598498 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment VMP1 ENSG00000062716 CDS Human protein_coding chr17:57808790 chr17:57808810 nonsynonymous SNV 1.000 4 41 hm7G_associated_SNPs_658 0 0 1 0 2 VMP1 chr17:57808782 3'AG 57808782 Downstream 29bp 603 chr17 57808810 57808810 1 + G T LIHC 57808790 + 57808770 57808810 41 TTGCTGTATTAGCTCCTCAAGAGTTACTGATCTATGAAATG TTGCTGTATTAGCTCCTCAAGAGTTACTGATCTATGAAATT < 41bp 1 0.663589582200751 NA NA experiment 0.672820835598498 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment VMP1 ENSG00000062716 CDS Human protein_coding chr17:57808790 chr17:57808810 nonsynonymous SNV 1.000 4 41 hm7G_associated_SNPs_658 0 0 1 0 2 VMP1 chr17:57808883 5'GT 57808883 Upstream 74bp 604 chr19 50881825 50881825 1 + G A LIHC 50881828 + 50881808 50881848 41 AAGAAGATTCGGAAACAGCAGCAGGAGTCACAGTCACAGTC AAGAAGATTCGGAAACAACAGCAGGAGTCACAGTCACAGTC < 41bp 1 0.670925125117123 NA NA experiment 0.658149749765754 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NR1H2 ENSG00000131408 CDS Human protein_coding chr19:50881828 chr19:50881825 nonsynonymous SNV . 0 18 hm7G_associated_SNPs_661 0 0 1 0 1 NR1H2 chr19:50881779 3'AG 50881779 Downstream 47bp 605 chr12 6973284 6973284 1 + T G LIHC 6973265 + 6973245 6973285 41 TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCTC TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCGC < 41bp 1 0.786005205597651 NA NA experiment 0.427989588804699 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment USP5 ENSG00000111667 CDS Human protein_coding chr12:6973265 chr12:6973284 synonymous SNV . 0 40 hm7G_associated_SNPs_662 0 0 1 0 2 USP5 chr12:6973214 3'AG 6973214 Downstream 71bp 606 chr12 6973284 6973284 1 + T G LIHC 6973265 + 6973245 6973285 41 TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCTC TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCGC < 41bp 1 0.786005205597651 NA NA experiment 0.427989588804699 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment USP5 ENSG00000111667 CDS Human protein_coding chr12:6973265 chr12:6973284 synonymous SNV . 0 40 hm7G_associated_SNPs_662 0 0 1 0 2 USP5 chr12:6973359 5'GT 6973359 Upstream 76bp 607 chr16 70595533 70595533 1 + G A LIHC 70595549 + 70595529 70595569 41 TCAGGTATTGGCCATGTCAAGCCGCTCATGGTTGAGCTATT TCAGATATTGGCCATGTCAAGCCGCTCATGGTTGAGCTATT < 41bp 1 0.654338528277323 NA NA experiment 0.691322943445354 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70595549 chr16:70595533 nonsynonymous SNV 0.782 1 5 hm7G_associated_SNPs_664 0 0 1 0 1 SF3B3 chr16:70595533 3'AG 70595533 Downstream 1bp 608 chr17 72200308 72200308 1 + G T LIHC 72200292 + 72200272 72200312 41 CGGAAAATTGAGGAAATCAAGGACTTCCTGCTCACAGCCCG CGGAAAATTGAGGAAATCAAGGACTTCCTGCTCACATCCCG < 41bp 1 0.710363778769221 NA NA experiment 0.579272442461558 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72200292 chr17:72200308 nonsynonymous SNV 0.961 1 37 hm7G_associated_SNPs_666 0 0 1 0 2 RPL38 chr17:72200269 3'AG 72200269 Downstream 40bp 609 chr17 72200308 72200308 1 + G T LIHC 72200292 + 72200272 72200312 41 CGGAAAATTGAGGAAATCAAGGACTTCCTGCTCACAGCCCG CGGAAAATTGAGGAAATCAAGGACTTCCTGCTCACATCCCG < 41bp 1 0.710363778769221 NA NA experiment 0.579272442461558 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72200292 chr17:72200308 nonsynonymous SNV 0.961 1 37 hm7G_associated_SNPs_666 0 0 1 0 2 RPL38 chr17:72200329 5'GT 72200329 Upstream 22bp 610 chr17 7124266 7124266 1 + T C LIHC 7124263 + 7124243 7124283 41 GAAGTGAACGATCCCGCCAAGAATGACGCTCTGGAGATGGT GAAGTGAACGATCCCGCCAAGAACGACGCTCTGGAGATGGT < 41bp 1 0.774341576680472 NA NA experiment 0.451316846639056 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ACADVL ENSG00000072778 CDS Human protein_coding chr17:7124263 chr17:7124266 synonymous SNV . 0 24 hm7G_associated_SNPs_667 0 0 1 0 1 ACADVL chr17:7124243 3'AG 7124243 Downstream 24bp 611 chr19 36142167 36142167 1 + A G LIHC 36142184 + 36142164 36142204 41 ACCAAAATCAAGAACTACAAGACCGCCCCTTTTGACAGCCG ACCGAAATCAAGAACTACAAGACCGCCCCTTTTGACAGCCG < 41bp 1 0.776391512103933 NA NA experiment 0.447216975792133 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142184 chr19:36142167 nonsynonymous SNV 0.902 3 4 hm7G_associated_SNPs_669 0 0 1 0 2 COX6B1 chr19:36142135 3'AG 36142135 Downstream 33bp 612 chr19 36142167 36142167 1 + A G LIHC 36142184 + 36142164 36142204 41 ACCAAAATCAAGAACTACAAGACCGCCCCTTTTGACAGCCG ACCGAAATCAAGAACTACAAGACCGCCCCTTTTGACAGCCG < 41bp 1 0.776391512103933 NA NA experiment 0.447216975792133 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142184 chr19:36142167 nonsynonymous SNV 0.902 3 4 hm7G_associated_SNPs_669 0 0 1 0 2 COX6B1 chr19:36142251 5'GT 36142251 Upstream 85bp 613 chr14 23235884 23235884 1 + G A LUAD 23235894 + 23235874 23235914 41 CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCGGGCAAAATGG CTGCGCAGGCACAAAAGCAAGTCCTCTTCCGGGCAAAATGG < 41bp 1 0.285076730200112 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235894 chr14:23235884 nonsynonymous SNV 0.069 2 11 hm7G_associated_SNPs_670 0 0 0 1 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 90bp 614 chr3 4712497 4712497 1 + G A LUAD 4712483 + 4712463 4712503 41 ATGCTCTGGAGGCAGGAGAAGACGAGGAAGAGGTGTGGCTG ATGCTCTGGAGGCAGGAGAAGACGAGGAAGAGGTATGGCTG < 41bp 1 0.519279449681791 NA NA experiment 0.961441100636419 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ITPR1 ENSG00000150995 CDS Human protein_coding chr3:4712483 chr3:4712497 synonymous SNV . 0 35 hm7G_associated_SNPs_671 0 0 1 0 1 ITPR1 chr3:4712413 3'AG 4712413 Downstream 85bp 615 chr22 38274119 38274119 1 + A G LUAD 38274104 + 38274084 38274124 41 AACACAAGATGAAGAACCTCGTGTGGACCAGCGGTATCTCA AACACAAGATGAAGAACCTCGTGTGGACCAGCGGTGTCTCA < 41bp 1 0.659470063474603 NA NA experiment 0.681059873050795 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control EIF3L ENSG00000100129 CDS Human protein_coding chr22:38274104 chr22:38274119 nonsynonymous SNV 0.780 0 36 hm7G_associated_SNPs_674 0 0 1 0 1 EIF3L chr22:38274178 5'GT 38274178 Upstream 60bp 616 chr16 712698 712698 1 + G A LUAD 712710 + 712690 712730 41 TGGAACACGAGCTGGTGCTGGACGGGGCTGTGGTGAGTGCC TGGAACACAAGCTGGTGCTGGACGGGGCTGTGGTGAGTGCC < 41bp 1 0.319648845686866 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712710 chr16:712698 nonsynonymous SNV 0.014 3 9 hm7G_associated_SNPs_675 0 0 1 0 2 WDR90 chr16:712673 3'AG 712673 Downstream 26bp 617 chr16 712698 712698 1 + G A LUAD 712710 + 712690 712730 41 TGGAACACGAGCTGGTGCTGGACGGGGCTGTGGTGAGTGCC TGGAACACAAGCTGGTGCTGGACGGGGCTGTGGTGAGTGCC < 41bp 1 0.319648845686866 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control WDR90 ENSG00000161996 CDS Human protein_coding chr16:712710 chr16:712698 nonsynonymous SNV 0.014 3 9 hm7G_associated_SNPs_675 0 0 1 0 2 WDR90 chr16:712679 3'AG 712679 Downstream 20bp 618 chr13 111077165 111077165 1 + G A LUAD 111077170 + 111077150 111077190 41 CAGGGACGTAAAGGAGACAAGGGTGAAAGGGGAGCCCCCGG CAGGGACGTAAAGGAAACAAGGGTGAAAGGGGAGCCCCCGG < 41bp 1 0.782834975560321 NA NA experiment 0.434330048879357 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111077170 chr13:111077165 nonsynonymous SNV 0.998 3 16 hm7G_associated_SNPs_677 0 0 1 0 1 COL4A2 chr13:111077215 5'GT 111077215 Upstream 51bp 619 chr17 48823140 48823140 1 + G T LUAD 48823124 + 48823104 48823144 41 AGAACCTGATCGTGATGAGCGTCTAAAAAAGGAGAAGCAAG AGAACCTGATCGTGATGAGCGTCTAAAAAAGGAGAATCAAG < 41bp 1 0.783744520242595 NA NA experiment 0.432510959514809 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48823124 chr17:48823140 nonsynonymous SNV 1.000 2 37 hm7G_associated_SNPs_678 0 0 1 0 1 LUC7L3 chr17:48823081 3'AG 48823081 Downstream 60bp 620 chr1 76253196 76253196 1 + G A LUAD 76253211 + 76253191 76253231 41 CAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTT CAGAAAGATGTTATTATCAAGTCAGATGCACCGGACACTTT < 41bp 1 0.616301837918716 NA NA experiment 0.767396324162568 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253211 chr1:76253196 synonymous SNV . 0 6 hm7G_associated_SNPs_679 0 0 1 0 2 RABGGTB chr1:76253182 3'AG 76253182 Downstream 15bp 621 chr1 76253196 76253196 1 + G A LUAD 76253211 + 76253191 76253231 41 CAGAAGGATGTTATTATCAAGTCAGATGCACCGGACACTTT CAGAAAGATGTTATTATCAAGTCAGATGCACCGGACACTTT < 41bp 1 0.616301837918716 NA NA experiment 0.767396324162568 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76253211 chr1:76253196 synonymous SNV . 0 6 hm7G_associated_SNPs_679 0 0 1 0 2 RABGGTB chr1:76253289 5'GT 76253289 Upstream 94bp 622 chr7 127729676 127729676 1 + G T LUAD 127729666 + 127729646 127729686 41 CTGCAGTTTGCAGATTCCAAGGGCGATGTGGGGCTGGGCTT CTGCAGTTTGCAGATTCCAAGGGCGATGTGTGGCTGGGCTT < 41bp 1 0.47997118913802 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127729666 chr7:127729676 nonsynonymous SNV 0.999 4 31 hm7G_associated_SNPs_680 0 0 1 0 1 SND1 chr7:127729744 5'GT 127729744 Upstream 69bp 623 chr7 149575787 149575787 1 + C T LUAD 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGTGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA < 41bp 1 0.788778772998255 NA NA experiment 0.42244245400349 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575787 nonsynonymous SNV 0.993 1 5 hm7G_associated_SNPs_681 0 0 1 0 3 ATP6V0E2 chr7:149575767 3'AG 149575767 Downstream 21bp 624 chr7 149575787 149575787 1 + C T LUAD 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGTGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA < 41bp 1 0.788778772998255 NA NA experiment 0.42244245400349 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575787 nonsynonymous SNV 0.993 1 5 hm7G_associated_SNPs_681 0 0 1 0 3 ATP6V0E2 chr7:149575835 5'GT 149575835 Upstream 49bp 625 chr7 149575787 149575787 1 + C T LUAD 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGTGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA < 41bp 1 0.788778772998255 NA NA experiment 0.42244245400349 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human antisense chr7:149575803 chr7:149575787 nonsynonymous SNV 0.993 1 5 hm7G_associated_SNPs_681 0 0 1 0 3 ATP6V0E2 chr7:149575879 5'GT 149575879 Upstream 93bp 626 chr17 7496106 7496106 1 - G C LUAD 7496116 - 7496096 7496136 41 TGGGGAACCCCCCCCAGCAAGTGCCAGGCGCCGCCGCTCCC TGGGGAACCCCCCCCAGCAAGTGCCAGGCGGCGCCGCTCCC < 41bp 1 0.7373400621941 NA NA experiment 0.5253198756118 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FXR2 ENSG00000129245 CDS Human protein_coding chr17:7496116 chr17:7496106 synonymous SNV . 0 31 hm7G_associated_SNPs_682 0 0 1 0 1 FXR2 chr17:7496012 5'GT 7496012 Upstream 95bp 627 chr19 11129651 11129651 1 + G A LUAD 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGGCATACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA < 41bp 1 0.293574750588902 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129651 synonymous SNV . 0 6 hm7G_associated_SNPs_683 0 0 1 0 2 SMARCA4 chr19:11129633 3'AG 11129633 Downstream 19bp 628 chr19 11129651 11129651 1 + G A LUAD 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGGCATACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA < 41bp 1 0.293574750588902 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129651 synonymous SNV . 0 6 hm7G_associated_SNPs_683 0 0 1 0 2 SMARCA4 chr19:11129699 5'GT 11129699 Upstream 49bp 629 chr20 57485035 57485035 1 + T C LUAD 57485045 + 57485025 57485065 41 GTGATCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAA GTGATCCTGTCCCTCAACAAGCAAGATCTGCTCGCTGAGAA < 41bp 1 0.62895559856252 NA NA experiment 0.74208880287496 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485045 chr20:57485035 nonsynonymous SNV 0.997 5 11 hm7G_associated_SNPs_684 0 0 1 0 1 GNAS chr20:57485006 3'AG 57485006 Downstream 30bp 630 chr20 57485035 57485035 1 + T C LUAD 57485049 + 57485029 57485069 41 TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAAGTC TCCTGTCCCTCAACAAGCAAGATCTGCTCGCTGAGAAAGTC < 41bp 1 0.549352450503757 NA NA experiment 0.901295098992485 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485049 chr20:57485035 nonsynonymous SNV 0.997 5 7 hm7G_associated_SNPs_685 0 0 1 0 1 GNAS chr20:57485006 3'AG 57485006 Downstream 30bp 631 chr1 151237694 151237694 1 + T G LUAD 151237705 + 151237685 151237725 41 TTGACATTATCAATTTTGGGGAAGAGGTGAGTAGGGACTGA TTGACATTAGCAATTTTGGGGAAGAGGTGAGTAGGGACTGA < 41bp 1 0.783068727648072 NA NA experiment 0.433862544703855 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237705 chr1:151237694 nonsynonymous SNV 1.000 4 10 hm7G_associated_SNPs_686 0 0 1 0 2 PSMD4 chr1:151237642 3'AG 151237642 Downstream 53bp 632 chr1 151237694 151237694 1 + T G LUAD 151237705 + 151237685 151237725 41 TTGACATTATCAATTTTGGGGAAGAGGTGAGTAGGGACTGA TTGACATTAGCAATTTTGGGGAAGAGGTGAGTAGGGACTGA < 41bp 1 0.783068727648072 NA NA experiment 0.433862544703855 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237705 chr1:151237694 nonsynonymous SNV 1.000 4 10 hm7G_associated_SNPs_686 0 0 1 0 2 PSMD4 chr1:151237710 5'GT 151237710 Upstream 17bp 633 chr1 228335203 228335203 1 + G T LUAD 228335188 + 228335168 228335208 41 CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCGGCCCAT CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCGTCCCAT < 41bp 1 0.755259569411909 NA NA experiment 0.489480861176183 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335188 chr1:228335203 synonymous SNV . 0 36 hm7G_associated_SNPs_687 0 0 1 0 2 GUK1 chr1:228335107 3'AG 228335107 Downstream 97bp 634 chr1 228335203 228335203 1 + G T LUAD 228335188 + 228335168 228335208 41 CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCGGCCCAT CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCGTCCCAT < 41bp 1 0.755259569411909 NA NA experiment 0.489480861176183 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335188 chr1:228335203 synonymous SNV . 0 36 hm7G_associated_SNPs_687 0 0 1 0 2 GUK1 chr1:228335245 5'GT 228335245 Upstream 43bp 635 chr12 110784087 110784087 1 + G A LUAD 110784098 + 110784078 110784118 41 CTCATGGATGAGACGCTCAAGTTTGTGGCCCGCAACTACCT CTCATGGATAAGACGCTCAAGTTTGTGGCCCGCAACTACCT < 41bp 1 0.541856569507763 NA NA experiment 0.916286860984474 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110784098 chr12:110784087 nonsynonymous SNV 0.989 5 10 hm7G_associated_SNPs_688 0 0 1 0 1 ATP2A2 chr12:110784126 5'GT 110784126 Upstream 40bp 636 chr12 58176936 58176936 1 + T A LUAD 58176927 + 58176907 58176947 41 GCGTCAGTCGCCCCAGCCAAGGCACACATTTTATGCTGGGC GCGTCAGTCGCCCCAGCCAAGGCACACATATTATGCTGGGC < 41bp 1 0.727386693748212 NA NA experiment 0.545226612503577 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment TSFM ENSG00000123297;ENSG00000257921 CDS Human other chr12:58176927 chr12:58176936 nonsynonymous SNV 0.026 0 30 hm7G_associated_SNPs_690 0 0 1 0 1 TSFM chr12:58176893 3'AG 58176893 Downstream 44bp 637 chr12 69993722 69993722 1 + G C LUAD 69993702 + 69993682 69993722 41 GTATAACAGAAAGTTTTCAAGTGAAGCGACAGGTTCTTCTG GTATAACAGAAAGTTTTCAAGTGAAGCGACAGGTTCTTCTC < 41bp 1 0.745393595385658 NA NA experiment 0.509212809228683 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CCT2 ENSG00000166226 CDS Human protein_coding chr12:69993702 chr12:69993722 synonymous SNV . 0 41 hm7G_associated_SNPs_692 0 0 1 3 2 CCT2 chr12:69993643 3'AG 69993643 Downstream 80bp 638 chr12 69993722 69993722 1 + G C LUAD 69993702 + 69993682 69993722 41 GTATAACAGAAAGTTTTCAAGTGAAGCGACAGGTTCTTCTG GTATAACAGAAAGTTTTCAAGTGAAGCGACAGGTTCTTCTC < 41bp 1 0.745393595385658 NA NA experiment 0.509212809228683 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CCT2 ENSG00000166226 CDS Human protein_coding chr12:69993702 chr12:69993722 synonymous SNV . 0 41 hm7G_associated_SNPs_692 0 0 1 3 2 CCT2 chr12:69993784 5'GT 69993784 Upstream 63bp 639 chr19 10782177 10782177 1 + A T LUAD 10782181 + 10782161 10782201 41 ACAACCGCCCTCCTGGACAAGGTGGCCGACAACCTGGCCAT ACAACCGCCCTCCTGGTCAAGGTGGCCGACAACCTGGCCAT < 41bp 1 0.533549935901234 NA NA experiment 0.932900128197532 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10782181 chr19:10782177 nonsynonymous SNV 0.996 1 17 hm7G_associated_SNPs_693 0 0 1 0 1 ILF3 chr19:10782211 5'GT 10782211 Upstream 35bp 640 chr19 11106926 11106926 1 + A C LUAD 11106939 + 11106919 11106959 41 ATCGACCAGAAGAAGGACAAGCGCCTGGCCTACCTCTTGCA ATCGACCCGAAGAAGGACAAGCGCCTGGCCTACCTCTTGCA < 41bp 1 0.459397180019867 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11106939 chr19:11106926 nonsynonymous SNV 1.000 4 8 hm7G_associated_SNPs_695 0 0 1 0 1 SMARCA4 chr19:11106889 3'AG 11106889 Downstream 38bp 641 chr1 156100423 156100423 1 + G A LUAD 156100417 + 156100397 156100437 41 CTCTTCTTTAGCAATACCAAGAAGGAGGGTGACCTGATAGC CTCTTCTTTAGCAATACCAAGAAGGAAGGTGACCTGATAGC < 41bp 1 0.748883970237829 NA NA experiment 0.502232059524341 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment LMNA ENSG00000160789 CDS Human protein_coding chr1:156100417 chr1:156100423 synonymous SNV . 0 27 hm7G_associated_SNPs_696 0 0 1 0 1 LMNA chr1:156100408 3'AG 156100408 Downstream 16bp 642 chr19 49518853 49518853 1 + A G LUAD 49518858 + 49518838 49518878 41 GTGCAGGTGGATGACATCAAGCGGGTCTACTCACTCTTCCT GTGCAGGTGGATGACGTCAAGCGGGTCTACTCACTCTTCCT < 41bp 1 0.672371638198831 NA NA experiment 0.655256723602338 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49518858 chr19:49518853 nonsynonymous SNV 0.999 1 16 hm7G_associated_SNPs_697 0 0 1 1 1 RUVBL2 chr19:49518943 5'GT 49518943 Upstream 91bp 643 chr7 127341287 127341287 1 + G T LUAD 127341268 + 127341248 127341288 41 GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAGTGAGGG GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAGTGAGTG < 41bp 1 0.706726884721838 NA NA experiment 0.586546230556325 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127341268 chr7:127341287 nonsynonymous SNV 0.999 3 40 hm7G_associated_SNPs_698 0 0 1 0 2 SND1 chr7:127341217 3'AG 127341217 Downstream 71bp 644 chr7 127341287 127341287 1 + G T LUAD 127341268 + 127341248 127341288 41 GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAGTGAGGG GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAGTGAGTG < 41bp 1 0.706726884721838 NA NA experiment 0.586546230556325 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127341268 chr7:127341287 nonsynonymous SNV 0.999 3 40 hm7G_associated_SNPs_698 0 0 1 0 2 SND1 chr7:127341377 5'GT 127341377 Upstream 91bp 645 chr7 127341286 127341286 1 + G T LUAD 127341268 + 127341248 127341288 41 GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAGTGAGGG GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAGTGATGG < 41bp 1 0.686193147331623 NA NA experiment 0.627613705336754 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127341268 chr7:127341286 nonsynonymous SNV 0.999 1 39 hm7G_associated_SNPs_699 0 0 1 0 2 SND1 chr7:127341217 3'AG 127341217 Downstream 70bp 646 chr7 127341286 127341286 1 + G T LUAD 127341268 + 127341248 127341288 41 GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAGTGAGGG GAACAAGCAAAGGCAGCCAAGAAAGGGATGTGGAGTGATGG < 41bp 1 0.686193147331623 NA NA experiment 0.627613705336754 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127341268 chr7:127341286 nonsynonymous SNV 0.999 1 39 hm7G_associated_SNPs_699 0 0 1 0 2 SND1 chr7:127341377 5'GT 127341377 Upstream 92bp 647 chrX 153628874 153628874 1 + A G LUAD 153628875 + 153628855 153628895 41 CCAGGGTTCACATTGGCCAAGTTATCATGTCCATCCGCACC CCAGGGTTCACATTGGCCAGGTTATCATGTCCATCCGCACC < 41bp 1 0.554143969418665 NA NA experiment 0.89171206116267 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628875 chrX:153628874 synonymous SNV . 0 20 hm7G_associated_SNPs_700 0 0 0 0 2 RPL10 chrX:153628805 3'AG 153628805 Downstream 70bp 648 chrX 153628874 153628874 1 + A G LUAD 153628875 + 153628855 153628895 41 CCAGGGTTCACATTGGCCAAGTTATCATGTCCATCCGCACC CCAGGGTTCACATTGGCCAGGTTATCATGTCCATCCGCACC < 41bp 1 0.554143969418665 NA NA experiment 0.89171206116267 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628875 chrX:153628874 synonymous SNV . 0 20 hm7G_associated_SNPs_700 0 0 0 0 2 RPL10 chrX:153628967 5'GT 153628967 Upstream 94bp 649 chr16 2807886 2807886 1 + A T LUAD 2807898 + 2807878 2807918 41 CTCTTTTGATCCTCAGCGTCGTGCCCGAGAAGCTAAACAAC CTCTTTTGTTCCTCAGCGTCGTGCCCGAGAAGCTAAACAAC < 41bp 1 0.443381569334629 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2807898 chr16:2807886 nonsynonymous SNV 1.000 3 9 hm7G_associated_SNPs_702 0 0 1 0 1 SRRM2 chr16:2807946 5'GT 2807946 Upstream 61bp 650 chr16 30744621 30744621 1 + G T LUAD 30744641 + 30744621 30744661 41 GTGCTGTTGCGGCAGCTCAAGGCAGAGGGCCACCGAGTGCT TTGCTGTTGCGGCAGCTCAAGGCAGAGGGCCACCGAGTGCT < 41bp 1 0.6106645951965 NA NA experiment 0.778670809607 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SRCAP ENSG00000080603 CDS Human protein_coding chr16:30744641 chr16:30744621 nonsynonymous SNV 1.000 0 1 hm7G_associated_SNPs_705 0 0 1 0 1 SRCAP chr16:30744601 3'AG 30744601 Downstream 21bp 651 chr8 145151255 145151255 1 + G A LUAD 145151252 + 145151232 145151272 41 GGTGGCAGGTGGAGGTTCAAGACGGCCCCAATGAAGATGGG GGTGGCAGGTGGAGGTTCAAGACAGCCCCAATGAAGATGGG < 41bp 1 0.660823213341603 NA NA experiment 0.678353573316794 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151252 chr8:145151255 nonsynonymous SNV 0.894 4 24 hm7G_associated_SNPs_706 0 0 1 0 1 CYC1 chr8:145151240 3'AG 145151240 Downstream 16bp 652 chr3 142772595 142772595 1 + C T LUAD 142772598 + 142772578 142772618 41 GAATCTCGCTCCAAAGACAAGAAGGAAAAAGATGAGTGTAC GAATCTCGCTCCAAAGATAAGAAGGAAAAAGATGAGTGTAC < 41bp 1 0.694224957658216 NA NA experiment 0.611550084683569 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment U2SURP ENSG00000163714 CDS Human protein_coding chr3:142772598 chr3:142772595 synonymous SNV . 0 18 hm7G_associated_SNPs_707 0 0 1 0 1 U2SURP chr3:142772518 3'AG 142772518 Downstream 78bp 653 chr1 53480639 53480639 1 + G T LUAD 53480621 + 53480601 53480641 41 GGGAAGCCGGAAAGAGGCAAGTTCCTGGTGCAAAGGTGGCT GGGAAGCCGGAAAGAGGCAAGTTCCTGGTGCAAAGGTGTCT < 41bp 1 0.717285887203486 NA NA experiment 0.565428225593029 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment SCP2 ENSG00000116171 CDS Human protein_coding chr1:53480621 chr1:53480639 nonsynonymous SNV 0.999 4 39 hm7G_associated_SNPs_708 0 0 1 0 1 SCP2 chr1:53480715 5'GT 53480715 Upstream 77bp 654 chr1 228335185 228335185 1 + C A LUAD 228335188 + 228335168 228335208 41 CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCGGCCCAT CAGGGTGTGCGGAACATAAAGGCCACCGATCTGCGGCCCAT < 41bp 1 0.792840516923787 NA NA experiment 0.414318966152426 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335188 chr1:228335185 synonymous SNV . 0 18 hm7G_associated_SNPs_709 0 0 1 0 2 GUK1 chr1:228335107 3'AG 228335107 Downstream 79bp 655 chr1 228335185 228335185 1 + C A LUAD 228335188 + 228335168 228335208 41 CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCGGCCCAT CAGGGTGTGCGGAACATAAAGGCCACCGATCTGCGGCCCAT < 41bp 1 0.792840516923787 NA NA experiment 0.414318966152426 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335188 chr1:228335185 synonymous SNV . 0 18 hm7G_associated_SNPs_709 0 0 1 0 2 GUK1 chr1:228335245 5'GT 228335245 Upstream 61bp 656 chr16 23700048 23700048 1 + T G LUAD 23700035 + 23700015 23700055 41 CCCATCTTCTGGGTCAGCAAGTGGGTGGACTATTCGGACAA CCCATCTTCTGGGTCAGCAAGTGGGTGGACTATGCGGACAA < 41bp 1 0.786854733078533 NA NA experiment 0.426290533842935 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700035 chr16:23700048 nonsynonymous SNV 1.000 4 34 hm7G_associated_SNPs_711 0 0 1 0 2 PLK1 chr16:23699989 3'AG 23699989 Downstream 60bp 657 chr16 23700048 23700048 1 + T G LUAD 23700035 + 23700015 23700055 41 CCCATCTTCTGGGTCAGCAAGTGGGTGGACTATTCGGACAA CCCATCTTCTGGGTCAGCAAGTGGGTGGACTATGCGGACAA < 41bp 1 0.786854733078533 NA NA experiment 0.426290533842935 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700035 chr16:23700048 nonsynonymous SNV 1.000 4 34 hm7G_associated_SNPs_711 0 0 1 0 2 PLK1 chr16:23700066 5'GT 23700066 Upstream 19bp 658 chr1 120284452 120284452 1 + G C LUAD 120284463 + 120284443 120284483 41 CTCCTGAAAGAGGCTTCCAAGCAGGCGGATGTGAACTTGGT CTCCTGAAACAGGCTTCCAAGCAGGCGGATGTGAACTTGGT < 41bp 1 0.790401106851291 NA NA experiment 0.419197786297417 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PHGDH ENSG00000092621 CDS Human protein_coding chr1:120284463 chr1:120284452 nonsynonymous SNV 0.279 1 10 hm7G_associated_SNPs_714 0 0 1 0 2 PHGDH chr1:120284390 3'AG 120284390 Downstream 63bp 659 chr1 120284452 120284452 1 + G C LUAD 120284463 + 120284443 120284483 41 CTCCTGAAAGAGGCTTCCAAGCAGGCGGATGTGAACTTGGT CTCCTGAAACAGGCTTCCAAGCAGGCGGATGTGAACTTGGT < 41bp 1 0.790401106851291 NA NA experiment 0.419197786297417 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PHGDH ENSG00000092621 CDS Human protein_coding chr1:120284463 chr1:120284452 nonsynonymous SNV 0.279 1 10 hm7G_associated_SNPs_714 0 0 1 0 2 PHGDH chr1:120284520 5'GT 120284520 Upstream 69bp 660 chrX 114856611 114856611 1 + G C LUAD 114856610 + 114856590 114856630 41 GAACTTCATGAGCTCTTCAAGGAAGCTAATATGCCATTACC GAACTTCATGAGCTCTTCAAGCAAGCTAATATGCCATTACC < 41bp 1 0.577060390433528 NA NA experiment 0.845879219132945 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856610 chrX:114856611 nonsynonymous SNV 1.000 1 22 hm7G_associated_SNPs_715 0 0 1 1 2 PLS3 chrX:114856558 3'AG 114856558 Downstream 54bp 661 chrX 114856611 114856611 1 + G C LUAD 114856610 + 114856590 114856630 41 GAACTTCATGAGCTCTTCAAGGAAGCTAATATGCCATTACC GAACTTCATGAGCTCTTCAAGCAAGCTAATATGCCATTACC < 41bp 1 0.577060390433528 NA NA experiment 0.845879219132945 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856610 chrX:114856611 nonsynonymous SNV 1.000 1 22 hm7G_associated_SNPs_715 0 0 1 1 2 PLS3 chrX:114856640 5'GT 114856640 Upstream 30bp 662 chr5 170814964 170814964 1 + G C LUAD 170814974 + 170814954 170814994 41 TGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCC TGGAAGATTCCATGGACATGGACATGAGCCCCCTGAGGCCC < 41bp 1 0.610418848303334 NA NA experiment 0.779162303393331 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NPM1 ENSG00000181163 CDS Human protein_coding chr5:170814974 chr5:170814964 synonymous SNV . 0 11 hm7G_associated_SNPs_716 0 0 1 0 1 NPM1 chr5:170815010 5'GT 170815010 Upstream 47bp 663 chr19 9958744 9958744 1 + G A LUAD 9958725 + 9958705 9958745 41 GGCTACATCCAGAAGATCAAGTCGGGAGAGGAGGACTTTGA GGCTACATCCAGAAGATCAAGTCGGGAGAGGAGGACTTTAA < 41bp 1 0.758422599919407 NA NA experiment 0.483154800161187 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PIN1 ENSG00000127445 CDS Human protein_coding chr19:9958725 chr19:9958744 nonsynonymous SNV 0.996 1 40 hm7G_associated_SNPs_717 0 0 1 0 2 PIN1 chr19:9958706 3'AG 9958706 Downstream 39bp 664 chr19 9958744 9958744 1 + G A LUAD 9958725 + 9958705 9958745 41 GGCTACATCCAGAAGATCAAGTCGGGAGAGGAGGACTTTGA GGCTACATCCAGAAGATCAAGTCGGGAGAGGAGGACTTTAA < 41bp 1 0.758422599919407 NA NA experiment 0.483154800161187 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PIN1 ENSG00000127445 CDS Human protein_coding chr19:9958725 chr19:9958744 nonsynonymous SNV 0.996 1 40 hm7G_associated_SNPs_717 0 0 1 0 2 PIN1 chr19:9958816 5'GT 9958816 Upstream 73bp 665 chr14 35780014 35780014 1 + G C LUAD 35780004 + 35779984 35780024 41 GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTCCTGT GCAGCTAACTGGAAATACAAGTATGGCTATCAGATTCCTGT < 41bp 1 0.670400316549668 NA NA experiment 0.659199366900663 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35780004 chr14:35780014 nonsynonymous SNV 1.000 1 31 hm7G_associated_SNPs_718 0 0 1 0 2 PSMA6 chr14:35779946 3'AG 35779946 Downstream 69bp 666 chr14 35780014 35780014 1 + G C LUAD 35780004 + 35779984 35780024 41 GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTCCTGT GCAGCTAACTGGAAATACAAGTATGGCTATCAGATTCCTGT < 41bp 1 0.670400316549668 NA NA experiment 0.659199366900663 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35780004 chr14:35780014 nonsynonymous SNV 1.000 1 31 hm7G_associated_SNPs_718 0 0 1 0 2 PSMA6 chr14:35780101 5'GT 35780101 Upstream 88bp 667 chr19 55899329 55899329 1 + G T LUAD 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGTACCACCATCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.763841989076462 NA NA experiment 0.472316021847077 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899329 nonsynonymous SNV 0.997 0 6 hm7G_associated_SNPs_719 0 0 0 0 2 RPL28 chr19:55899298 3'AG 55899298 Downstream 32bp 668 chr19 55899329 55899329 1 + G T LUAD 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGTACCACCATCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.763841989076462 NA NA experiment 0.472316021847077 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899329 nonsynonymous SNV 0.997 0 6 hm7G_associated_SNPs_719 0 0 0 0 2 RPL28 chr19:55899416 5'GT 55899416 Upstream 88bp 669 chr20 44527020 44527020 1 + G T LUAD 44527035 + 44527015 44527055 41 CACATGGTTCCCACCGACAAGCCCCTCGCTGCCTTCACCAT CACATTGTTCCCACCGACAAGCCCCTCGCTGCCTTCACCAT < 41bp 1 0.781153028257835 NA NA experiment 0.437693943484329 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control CTSA ENSG00000064601 CDS Human protein_coding chr20:44527035 chr20:44527020 nonsynonymous SNV 1.000 5 6 hm7G_associated_SNPs_720 0 0 1 0 1 CTSA chr20:44527006 3'AG 44527006 Downstream 15bp 670 chr2 220371037 220371037 1 + G C LUAD 220371039 + 220371019 220371059 41 CCGTGGGACGCTGGGCCCGCGTGGAGGGTACCCCCAGTGAC CCGTGGGACGCTGGGCCCCCGTGGAGGGTACCCCCAGTGAC < 41bp 1 0.660170542050433 NA NA experiment 0.679658915899134 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371039 chr2:220371037 nonsynonymous SNV 0.992 4 19 hm7G_associated_SNPs_721 0 0 0 0 1 GMPPA chr2:220370976 3'AG 220370976 Downstream 62bp 671 chr6 43096737 43096737 1 + C A LUAD 43096743 + 43096723 43096763 41 ACAGCCATTGTCTTCATCAAGCAGCCGTCCTCCCAGGATGC ACAGCCATTGTCTTAATCAAGCAGCCGTCCTCCCAGGATGC < 41bp 1 0.545930980783561 NA NA experiment 0.908138038432878 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096743 chr6:43096737 nonsynonymous SNV 0.985 3 15 hm7G_associated_SNPs_722 0 0 1 0 1 PTK7 chr6:43096715 3'AG 43096715 Downstream 23bp 672 chr16 2258828 2258828 1 + C T LUAD 2258812 + 2258792 2258832 41 GTGGAGACTGGAGAGATCAAGAGAGAGTATGGCGGCCACCA GTGGAGACTGGAGAGATCAAGAGAGAGTATGGCGGCTACCA < 41bp 1 0.713381831136389 NA NA experiment 0.573236337727221 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258812 chr16:2258828 nonsynonymous SNV 0.998 3 37 hm7G_associated_SNPs_723 0 0 1 0 1 MLST8 chr16:2258760 3'AG 2258760 Downstream 69bp 673 chr19 17533169 17533169 1 + G T LUAD 17533157 + 17533137 17533177 41 CCAGAGGCCTCTGTGTCCAAGAAGAAACGCATGTGTGTGAA CCAGAGGCCTCTGTGTCCAAGAAGAAACGCATTTGTGTGAA < 41bp 1 0.793059727574585 NA NA experiment 0.41388054485083 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MVB12A ENSG00000141971 CDS Human protein_coding chr19:17533157 chr19:17533169 nonsynonymous SNV 1.000 0 33 hm7G_associated_SNPs_724 0 0 1 0 1 MVB12A chr19:17533141 3'AG 17533141 Downstream 29bp 674 chr17 5324728 5324728 1 + T A LUAD 5324721 + 5324701 5324741 41 AGAACAGCTTTCTAGTTCAAGAGGTGATGGAAGAAGAGTGG AGAACAGCTTTCTAGTTCAAGAGGTGAAGGAAGAAGAGTGG < 41bp 1 0.762738272365845 NA NA experiment 0.474523455268309 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPAIN ENSG00000129197 CDS Human protein_coding chr17:5324721 chr17:5324728 nonsynonymous SNV 1.000 4 28 hm7G_associated_SNPs_727 0 0 1 0 1 RPAIN chr17:5324786 5'GT 5324786 Upstream 59bp 675 chr16 4911085 4911085 1 + C T LUAD 4911086 + 4911066 4911106 41 CAGCACCCCTGGAGAAGCGCGTTAAGGAGCTGGCTCAGGTA CAGCACCCCTGGAGAAGCGTGTTAAGGAGCTGGCTCAGGTA < 41bp 1 0.712910309447722 NA NA experiment 0.574179381104555 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control UBN1 ENSG00000118900 CDS Human protein_coding chr16:4911086 chr16:4911085 synonymous SNV . 0 20 hm7G_associated_SNPs_728 0 0 1 0 1 UBN1 chr16:4911103 5'GT 4911103 Upstream 19bp 676 chr16 29994920 29994920 1 + T C LUAD 29994923 + 29994903 29994943 41 CCACTTCCACCACCTCTTCCGCCCGCCGCCGGGCCTACTGC CCACTTCCACCACCTCTCCCGCCCGCCGCCGGGCCTACTGC < 41bp 1 0.490485071740923 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994923 chr16:29994920 nonsynonymous SNV 0.456 1 18 hm7G_associated_SNPs_729 0 0 1 0 2 TAOK2 chr16:29994824 3'AG 29994824 Downstream 97bp 677 chr16 29994920 29994920 1 + T C LUAD 29994923 + 29994903 29994943 41 CCACTTCCACCACCTCTTCCGCCCGCCGCCGGGCCTACTGC CCACTTCCACCACCTCTCCCGCCCGCCGCCGGGCCTACTGC < 41bp 1 0.490485071740923 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29994923 chr16:29994920 nonsynonymous SNV 0.456 1 18 hm7G_associated_SNPs_729 0 0 1 0 2 TAOK2 chr16:29994985 5'GT 29994985 Upstream 66bp 678 chr21 45738376 45738376 1 + G A LUAD 45738361 + 45738341 45738381 41 CCTTCCCCACAGAGCAGCAAGATGGGCATGGAGGCGGTGAT CCTTCCCCACAGAGCAGCAAGATGGGCATGGAGGCAGTGAT < 41bp 1 0.630604475176785 NA NA experiment 0.73879104964643 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PFKL ENSG00000141959 CDS Human protein_coding chr21:45738361 chr21:45738376 synonymous SNV . 0 36 hm7G_associated_SNPs_730 0 0 1 0 1 PFKL chr21:45738353 3'AG 45738353 Downstream 24bp 679 chr11 65826990 65826990 1 + A G LUAD 65827009 + 65826989 65827029 41 AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG AGGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG < 41bp 1 0.765886694954927 NA NA experiment 0.468226610090146 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827009 chr11:65826990 nonsynonymous SNV 1.000 0 2 hm7G_associated_SNPs_731 0 0 1 0 2 SF3B2 chr11:65826986 3'AG 65826986 Downstream 5bp 680 chr11 65826990 65826990 1 + A G LUAD 65827009 + 65826989 65827029 41 AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG AGGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG < 41bp 1 0.765886694954927 NA NA experiment 0.468226610090146 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827009 chr11:65826990 nonsynonymous SNV 1.000 0 2 hm7G_associated_SNPs_731 0 0 1 0 2 SF3B2 chr11:65827066 5'GT 65827066 Upstream 77bp 681 chr5 175923528 175923528 1 + A G LUAD 175923543 + 175923523 175923563 41 TGGCCATGATTATGCTGAAGGATCGAAGGATGACTGTGGTG TGGCCGTGATTATGCTGAAGGATCGAAGGATGACTGTGGTG < 41bp 1 0.721836804312901 NA NA experiment 0.556326391374198 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FAF2 ENSG00000113194 CDS Human protein_coding chr5:175923543 chr5:175923528 nonsynonymous SNV 1.000 1 6 hm7G_associated_SNPs_732 0 0 1 0 1 FAF2 chr5:175923487 3'AG 175923487 Downstream 42bp 682 chr6 32945987 32945987 1 + A G LUSC 32945998 + 32945978 32946018 41 AAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGG AAAGAGAAAGAGAAGAAACGGAAGGCAGAGAAGCATCGAGG < 41bp 1 0.515619937951754 NA NA experiment 0.968760124096493 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32945998 chr6:32945987 nonsynonymous SNV 1.000 1 10 hm7G_associated_SNPs_733 0 0 1 0 1 BRD2 chr6:32945903 3'AG 32945903 Downstream 85bp 683 chr2 102459081 102459081 1 + G A LUSC 102459092 + 102459072 102459112 41 TGAAACTGAGTATGAGTACAGTGGGAGTGAGGAAGAAGAGG TGAAACTGAATATGAGTACAGTGGGAGTGAGGAAGAAGAGG < 41bp 1 0.654307500598946 NA NA experiment 0.691384998802109 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102459092 chr2:102459081 synonymous SNV . 0 10 hm7G_associated_SNPs_734 0 0 1 0 2 MAP4K4 chr2:102459071 3'AG 102459071 Downstream 11bp 684 chr2 102459081 102459081 1 + G A LUSC 102459092 + 102459072 102459112 41 TGAAACTGAGTATGAGTACAGTGGGAGTGAGGAAGAAGAGG TGAAACTGAATATGAGTACAGTGGGAGTGAGGAAGAAGAGG < 41bp 1 0.654307500598946 NA NA experiment 0.691384998802109 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102459092 chr2:102459081 synonymous SNV . 0 10 hm7G_associated_SNPs_734 0 0 1 0 2 MAP4K4 chr2:102459143 5'GT 102459143 Upstream 63bp 685 chr7 150767109 150767109 1 + C G LUSC 150767122 + 150767102 150767142 41 GTCATCTCTGACCAGATCAAGGCCGAGGACAGGGCCAACGT GTCATCTGTGACCAGATCAAGGCCGAGGACAGGGCCAACGT < 41bp 1 0.797702599947123 NA NA experiment 0.404594800105753 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150767122 chr7:150767109 nonsynonymous SNV 0.999 4 8 hm7G_associated_SNPs_736 0 0 1 0 2 SLC4A2 chr7:150767034 3'AG 150767034 Downstream 76bp 686 chr7 150767109 150767109 1 + C G LUSC 150767122 + 150767102 150767142 41 GTCATCTCTGACCAGATCAAGGCCGAGGACAGGGCCAACGT GTCATCTGTGACCAGATCAAGGCCGAGGACAGGGCCAACGT < 41bp 1 0.797702599947123 NA NA experiment 0.404594800105753 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150767122 chr7:150767109 nonsynonymous SNV 0.999 4 8 hm7G_associated_SNPs_736 0 0 1 0 2 SLC4A2 chr7:150767169 5'GT 150767169 Upstream 61bp 687 chr19 10367406 10367406 1 + G A LUSC 10367401 + 10367381 10367421 41 CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGCGGGG CAGAGCTATGCCAAGACCAAGACGAAAGCCGAGGTGCGGGG < 41bp 1 0.774301159642986 NA NA experiment 0.451397680714028 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367401 chr19:10367406 nonsynonymous SNV 0.530 1 26 hm7G_associated_SNPs_739 0 0 1 0 2 MRPL4 chr19:10367384 3'AG 10367384 Downstream 23bp 688 chr19 10367406 10367406 1 + G A LUSC 10367401 + 10367381 10367421 41 CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGCGGGG CAGAGCTATGCCAAGACCAAGACGAAAGCCGAGGTGCGGGG < 41bp 1 0.774301159642986 NA NA experiment 0.451397680714028 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367401 chr19:10367406 nonsynonymous SNV 0.530 1 26 hm7G_associated_SNPs_739 0 0 1 0 2 MRPL4 chr19:10367501 5'GT 10367501 Upstream 96bp 689 chr17 76210454 76210454 1 + C T LUSC 76210442 + 76210422 76210462 41 GCCTGGCAGCCCTTTCTCAAGGACCACCGCATCTCTACATT GCCTGGCAGCCCTTTCTCAAGGACCACCGCATTTCTACATT < 41bp 1 0.557339447945407 NA NA experiment 0.885321104109185 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment BIRC5 ENSG00000089685 CDS Human protein_coding chr17:76210442 chr17:76210454 synonymous SNV . 0 33 hm7G_associated_SNPs_740 0 0 1 0 1 BIRC5 chr17:76210508 5'GT 76210508 Upstream 55bp 690 chr17 74732326 74732326 1 - C G LUSC 74732318 - 74732298 74732338 41 AGTCCTCCCCCAGTGTCCAAGAGGGAATCCAAATCCAGGTC AGTCCTCCCCCACTGTCCAAGAGGGAATCCAAATCCAGGTC < 41bp 1 0.705755813831543 NA NA experiment 0.588488372336913 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment SRSF2 ENSG00000161547 CDS Human protein_coding chr17:74732318 chr17:74732326 nonsynonymous SNV 0.912 0 13 hm7G_associated_SNPs_741 0 0 1 0 1 SRSF2 chr17:74732236 5'GT 74732236 Upstream 91bp 691 chr19 54609269 54609269 1 + C T LUSC 54609275 + 54609255 54609295 41 CCATTGAGCCCCTACTTCAAGTACTCCGTCATGATCAACAA CCATTGAGCCCCTATTTCAAGTACTCCGTCATGATCAACAA < 41bp 1 0.6892392743361 NA NA experiment 0.621521451327799 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609275 chr19:54609269 nonsynonymous SNV 0.022 0 15 hm7G_associated_SNPs_744 0 0 1 0 2 NDUFA3 chr19:54609241 3'AG 54609241 Downstream 29bp 692 chr19 54609269 54609269 1 + C T LUSC 54609275 + 54609255 54609295 41 CCATTGAGCCCCTACTTCAAGTACTCCGTCATGATCAACAA CCATTGAGCCCCTATTTCAAGTACTCCGTCATGATCAACAA < 41bp 1 0.6892392743361 NA NA experiment 0.621521451327799 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609275 chr19:54609269 nonsynonymous SNV 0.022 0 15 hm7G_associated_SNPs_744 0 0 1 0 2 NDUFA3 chr19:54609318 5'GT 54609318 Upstream 50bp 693 chrX 153628196 153628196 1 + C T LUSC 153628182 + 153628162 153628202 41 TTTGTGCCAATAAGTACATGGTAAAAAGTTGTGGCAAAGAT TTTGTGCCAATAAGTACATGGTAAAAAGTTGTGGTAAAGAT < 41bp 1 0.701977734854072 NA NA experiment 0.596044530291856 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628182 chrX:153628196 synonymous SNV . 0 35 hm7G_associated_SNPs_745 0 0 0 0 1 RPL10 chrX:153628282 5'GT 153628282 Upstream 87bp 694 chr10 7838085 7838085 1 + A G LUSC 7838091 + 7838071 7838111 41 CTTTTATCCTCAGGATTCAAGTTCGAAATATGGCAACTTTG CTTTTATCCTCAGGGTTCAAGTTCGAAATATGGCAACTTTG < 41bp 1 0.641699567663699 NA NA experiment 0.716600864672602 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7838091 chr10:7838085 nonsynonymous SNV 0.993 0 15 hm7G_associated_SNPs_746 0 0 1 0 2 ATP5C1 chr10:7838084 3'AG 7838084 Downstream 2bp 695 chr10 7838085 7838085 1 + A G LUSC 7838091 + 7838071 7838111 41 CTTTTATCCTCAGGATTCAAGTTCGAAATATGGCAACTTTG CTTTTATCCTCAGGGTTCAAGTTCGAAATATGGCAACTTTG < 41bp 1 0.641699567663699 NA NA experiment 0.716600864672602 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7838091 chr10:7838085 nonsynonymous SNV 0.993 0 15 hm7G_associated_SNPs_746 0 0 1 0 2 ATP5C1 chr10:7838118 5'GT 7838118 Upstream 34bp 696 chr21 45161591 45161591 1 + C G LUSC 45161571 + 45161551 45161591 41 ATGCCCACTGGAAGGGCCAAGTGCTGAATTCAGATGAGCTC ATGCCCACTGGAAGGGCCAAGTGCTGAATTCAGATGAGCTG < 41bp 1 0.328354575447623 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45161571 chr21:45161591 synonymous SNV . 0 41 hm7G_associated_SNPs_747 0 0 1 0 2 PDXK chr21:45161548 3'AG 45161548 Downstream 44bp 697 chr21 45161591 45161591 1 + C G LUSC 45161571 + 45161551 45161591 41 ATGCCCACTGGAAGGGCCAAGTGCTGAATTCAGATGAGCTC ATGCCCACTGGAAGGGCCAAGTGCTGAATTCAGATGAGCTG < 41bp 1 0.328354575447623 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PDXK ENSG00000160209 CDS Human protein_coding chr21:45161571 chr21:45161591 synonymous SNV . 0 41 hm7G_associated_SNPs_747 0 0 1 0 2 PDXK chr21:45161652 5'GT 45161652 Upstream 62bp 698 chr3 142720486 142720486 1 + C T LUSC 142720470 + 142720450 142720490 41 GAAGGAGGGGCAAAGCTCAAGATGGCGGACAAAACGCCAGG GAAGGAGGGGCAAAGCTCAAGATGGCGGACAAAACGTCAGG < 41bp 1 0.643585346166928 NA NA experiment 0.712829307666144 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment U2SURP ENSG00000163714 CDS Human protein_coding chr3:142720470 chr3:142720486 nonsynonymous SNV 1.000 2 37 hm7G_associated_SNPs_748 0 0 1 0 1 U2SURP chr3:142720515 5'GT 142720515 Upstream 30bp 699 chr10 85901279 85901279 1 + G T LUSC 85901270 + 85901250 85901290 41 CACCACCATGTTGGCTGCAAGGCTGGTGTGTCTCCGGACAC CACCACCATGTTGGCTGCAAGGCTGGTGTTTCTCCGGACAC < 41bp 1 0.74773814878713 NA NA experiment 0.50452370242574 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GHITM ENSG00000165678 CDS Human protein_coding chr10:85901270 chr10:85901279 nonsynonymous SNV 0.999 4 30 hm7G_associated_SNPs_749 0 0 1 0 1 GHITM chr10:85901218 3'AG 85901218 Downstream 62bp 700 chr12 7080195 7080195 1 + A G LUSC 7080197 + 7080177 7080217 41 CGACTAGGGGCAGGAAACAAGATCGGAGGCCGTAGTTTATT CGACTAGGGGCAGGAAACGAGATCGGAGGCCGTAGTTTATT < 41bp 1 0.763565293685076 NA NA experiment 0.472869412629849 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080197 chr12:7080195 nonsynonymous SNV 0.996 0 19 hm7G_associated_SNPs_752 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 59bp 701 chr12 6647303 6647303 1 + G A LUSC 6647313 + 6647293 6647333 41 ACAGGGTGGTGGACCTCATGGCCCACATGGCCTCCAAGGAG ACAGGGTGGTAGACCTCATGGCCCACATGGCCTCCAAGGAG < 41bp 1 0.577294596827476 NA NA experiment 0.845410806345049 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647313 chr12:6647303 synonymous SNV . 0 11 hm7G_associated_SNPs_754 0 0 1 0 1 GAPDH chr12:6647267 3'AG 6647267 Downstream 37bp 702 chr2 54036372 54036372 1 + G T LUSC 54036357 + 54036337 54036377 41 TTCTTTTTTTTTAGGGTGTCGGTTGGTGGAAATATGAATTC TTCTTTTTTTTTAGGGTGTCGGTTGGTGGAAATATTAATTC < 41bp 1 0.773295954950648 NA NA experiment 0.453408090098705 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERLEC1 ENSG00000068912 CDS Human protein_coding chr2:54036357 chr2:54036372 stopgain 1.000 1 36 hm7G_associated_SNPs_755 0 0 1 0 1 ERLEC1 chr2:54036410 5'GT 54036410 Upstream 39bp 703 chr1 156100434 156100434 1 + T A LUSC 156100417 + 156100397 156100437 41 CTCTTCTTTAGCAATACCAAGAAGGAGGGTGACCTGATAGC CTCTTCTTTAGCAATACCAAGAAGGAGGGTGACCTGAAAGC < 41bp 1 0.761604981246713 NA NA experiment 0.476790037506574 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment LMNA ENSG00000160789 CDS Human protein_coding chr1:156100417 chr1:156100434 nonsynonymous SNV 0.299 0 38 hm7G_associated_SNPs_757 0 0 1 0 1 LMNA chr1:156100408 3'AG 156100408 Downstream 27bp 704 chr7 149575792 149575792 1 + C T LUSC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGTTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA < 41bp 1 0.756683210609824 NA NA experiment 0.486633578780352 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575792 synonymous SNV . 0 10 hm7G_associated_SNPs_758 0 0 1 0 3 ATP6V0E2 chr7:149575767 3'AG 149575767 Downstream 26bp 705 chr7 149575792 149575792 1 + C T LUSC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGTTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA < 41bp 1 0.756683210609824 NA NA experiment 0.486633578780352 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575792 synonymous SNV . 0 10 hm7G_associated_SNPs_758 0 0 1 0 3 ATP6V0E2 chr7:149575835 5'GT 149575835 Upstream 44bp 706 chr7 149575792 149575792 1 + C T LUSC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGTTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA < 41bp 1 0.756683210609824 NA NA experiment 0.486633578780352 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human antisense chr7:149575803 chr7:149575792 synonymous SNV . 0 10 hm7G_associated_SNPs_758 0 0 1 0 3 ATP6V0E2 chr7:149575879 5'GT 149575879 Upstream 88bp 707 chr19 52705205 52705205 1 + C T LUSC 52705217 + 52705197 52705237 41 CTTCGCCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT CTTCGCCTTAACAGCATCAAGAAGCTGTCCACCATCGCCTT < 41bp 1 0.684454686395999 NA NA experiment 0.631090627208002 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705217 chr19:52705205 nonsynonymous SNV . 0 9 hm7G_associated_SNPs_759 0 0 1 0 2 PPP2R1A chr19:52705197 3'AG 52705197 Downstream 9bp 708 chr19 52705205 52705205 1 + C T LUSC 52705217 + 52705197 52705237 41 CTTCGCCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT CTTCGCCTTAACAGCATCAAGAAGCTGTCCACCATCGCCTT < 41bp 1 0.684454686395999 NA NA experiment 0.631090627208002 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705217 chr19:52705205 nonsynonymous SNV . 0 9 hm7G_associated_SNPs_759 0 0 1 0 2 PPP2R1A chr19:52705287 5'GT 52705287 Upstream 83bp 709 chr17 79658588 79658588 1 + G C LUSC 79658568 + 79658548 79658588 41 TGGCATCGAGAAGGAGGTGCGCGTGTGTGAGCCCTGCTACG TGGCATCGAGAAGGAGGTGCGCGTGTGTGAGCCCTGCTACC < 41bp 1 0.7825087335433 NA NA experiment 0.434982532913401 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HGS ENSG00000185359 CDS Human protein_coding chr17:79658568 chr17:79658588 nonsynonymous SNV 0.979 4 41 hm7G_associated_SNPs_761 0 0 1 0 1 HGS chr17:79658601 5'GT 79658601 Upstream 14bp 710 chr19 18288713 18288713 1 + T C LUSC 18288718 + 18288698 18288738 41 CTCAGGAGTGTTTGCTTCAAGTGATGGCCGGTGAGCTGCGG CTCAGGAGTGTTTGCCTCAAGTGATGGCCGGTGAGCTGCGG < 41bp 1 0.682117190587894 NA NA experiment 0.635765618824212 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control IFI30 ENSG00000216490 CDS Human protein_coding chr19:18288718 chr19:18288713 nonsynonymous SNV 0.007 0 16 hm7G_associated_SNPs_762 0 0 1 0 1 IFI30 chr19:18288659 3'AG 18288659 Downstream 55bp 711 chr1 228284831 228284831 1 + G A LUSC 228284845 + 228284825 228284865 41 ATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGA ATCTTCACCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGA < 41bp 1 0.673774085192366 NA NA experiment 0.652451829615267 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228284845 chr1:228284831 nonsynonymous SNV 0.989 1 7 hm7G_associated_SNPs_763 0 0 1 0 1 ARF1 chr1:228284779 3'AG 228284779 Downstream 53bp 712 chr3 128990648 128990648 1 + C T LUSC 128990659 + 128990639 128990679 41 GGTCTTGGGCCCCTCTTCAAGTCCTCGCCTGAGCCCGTGGC GGTCTTGGGTCCCTCTTCAAGTCCTCGCCTGAGCCCGTGGC < 41bp 1 0.624577712496266 NA NA experiment 0.750844575007467 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment COPG1 ENSG00000181789 CDS Human protein_coding chr3:128990659 chr3:128990648 nonsynonymous SNV 0.939 1 10 hm7G_associated_SNPs_764 0 0 1 0 1 COPG1 chr3:128990610 3'AG 128990610 Downstream 39bp 713 chr12 110784109 110784109 1 + G A LUSC 110784098 + 110784078 110784118 41 CTCATGGATGAGACGCTCAAGTTTGTGGCCCGCAACTACCT CTCATGGATGAGACGCTCAAGTTTGTGGCCCACAACTACCT < 41bp 1 0.451621465852189 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110784098 chr12:110784109 nonsynonymous SNV 1.000 5 32 hm7G_associated_SNPs_765 0 0 1 2 1 ATP2A2 chr12:110784126 5'GT 110784126 Upstream 18bp 714 chr19 55899336 55899336 1 + A G LUSC 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACCACCGTCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.761346171548459 NA NA experiment 0.477307656903083 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899336 nonsynonymous SNV 0.997 1 13 hm7G_associated_SNPs_767 0 0 0 0 2 RPL28 chr19:55899298 3'AG 55899298 Downstream 39bp 715 chr19 55899336 55899336 1 + A G LUSC 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACCACCGTCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.761346171548459 NA NA experiment 0.477307656903083 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899336 nonsynonymous SNV 0.997 1 13 hm7G_associated_SNPs_767 0 0 0 0 2 RPL28 chr19:55899416 5'GT 55899416 Upstream 81bp 716 chrX 153627841 153627841 1 + C A LUSC 153627835 + 153627815 153627855 41 CCAATCCTTTTAGATGCCAAGATTCGCATTTTTGACCTGGG CCAATCCTTTTAGATGCCAAGATTCGAATTTTTGACCTGGG < 41bp 1 0.773051383761606 NA NA experiment 0.453897232476788 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627835 chrX:153627841 synonymous SNV . 0 27 hm7G_associated_SNPs_771 0 0 1 0 2 RPL10 chrX:153627828 3'AG 153627828 Downstream 14bp 717 chrX 153627841 153627841 1 + C A LUSC 153627835 + 153627815 153627855 41 CCAATCCTTTTAGATGCCAAGATTCGCATTTTTGACCTGGG CCAATCCTTTTAGATGCCAAGATTCGAATTTTTGACCTGGG < 41bp 1 0.773051383761606 NA NA experiment 0.453897232476788 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627835 chrX:153627841 synonymous SNV . 0 27 hm7G_associated_SNPs_771 0 0 1 0 2 RPL10 chrX:153627935 5'GT 153627935 Upstream 95bp 718 chr20 62660797 62660797 1 + C T LUSC 62660785 + 62660765 62660805 41 AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAA AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCTCTGAAGAA < 41bp 1 0.754359158037278 NA NA experiment 0.491281683925445 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62660785 chr20:62660797 synonymous SNV . 0 33 hm7G_associated_SNPs_772 0 0 1 0 2 PRPF6 chr20:62660730 3'AG 62660730 Downstream 68bp 719 chr20 62660797 62660797 1 + C T LUSC 62660785 + 62660765 62660805 41 AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAA AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCTCTGAAGAA < 41bp 1 0.754359158037278 NA NA experiment 0.491281683925445 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62660785 chr20:62660797 synonymous SNV . 0 33 hm7G_associated_SNPs_772 0 0 1 0 2 PRPF6 chr20:62660844 5'GT 62660844 Upstream 48bp 720 chr19 11129660 11129660 1 + T C LUSC 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGGCGTACGAGTTCGACAAGTGGGCCCCCTCCGTGGTGAA < 41bp 1 0.318846676329653 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129660 synonymous SNV . 0 15 hm7G_associated_SNPs_773 0 0 1 0 2 SMARCA4 chr19:11129633 3'AG 11129633 Downstream 28bp 721 chr19 11129660 11129660 1 + T C LUSC 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGGCGTACGAGTTCGACAAGTGGGCCCCCTCCGTGGTGAA < 41bp 1 0.318846676329653 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129660 synonymous SNV . 0 15 hm7G_associated_SNPs_773 0 0 1 0 2 SMARCA4 chr19:11129699 5'GT 11129699 Upstream 40bp 722 chr1 228284827 228284827 1 + C G LUSC 228284845 + 228284825 228284865 41 ATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGA ATGTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGA < 41bp 1 0.666176438297812 NA NA experiment 0.667647123404377 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228284845 chr1:228284827 nonsynonymous SNV 0.999 1 3 hm7G_associated_SNPs_774 0 0 1 0 1 ARF1 chr1:228284779 3'AG 228284779 Downstream 49bp 723 chr9 116038927 116038927 1 + G T LUSC 116038922 + 116038902 116038942 41 GGAAGAGAAGGAGAGGGAGCGTCTGGCCAAAGGAGAGTCTG GGAAGAGAAGGAGAGGGAGCGTCTGTCCAAAGGAGAGTCTG < 41bp 1 0.770060355064836 NA NA experiment 0.459879289870327 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116038922 chr9:116038927 nonsynonymous SNV 1.000 0 26 hm7G_associated_SNPs_775 0 0 1 0 2 PRPF4 chr9:116038828 3'AG 116038828 Downstream 100bp 724 chr9 116038927 116038927 1 + G T LUSC 116038922 + 116038902 116038942 41 GGAAGAGAAGGAGAGGGAGCGTCTGGCCAAAGGAGAGTCTG GGAAGAGAAGGAGAGGGAGCGTCTGTCCAAAGGAGAGTCTG < 41bp 1 0.770060355064836 NA NA experiment 0.459879289870327 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116038922 chr9:116038927 nonsynonymous SNV 1.000 0 26 hm7G_associated_SNPs_775 0 0 1 0 2 PRPF4 chr9:116039005 5'GT 116039005 Upstream 79bp 725 chr19 17531169 17531169 1 + C T LUSC 17531163 + 17531143 17531183 41 GCACCCGCCAGCTTTGGCAAGAGCTTCGCGCAGAAATCTGG GCACCCGCCAGCTTTGGCAAGAGCTTTGCGCAGAAATCTGG < 41bp 1 0.663382635684532 NA NA experiment 0.673234728630935 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment MVB12A ENSG00000141971 CDS Human protein_coding chr19:17531163 chr19:17531169 synonymous SNV . 0 27 hm7G_associated_SNPs_776 0 0 1 0 2 MVB12A chr19:17531122 3'AG 17531122 Downstream 48bp 726 chr19 17531169 17531169 1 + C T LUSC 17531163 + 17531143 17531183 41 GCACCCGCCAGCTTTGGCAAGAGCTTCGCGCAGAAATCTGG GCACCCGCCAGCTTTGGCAAGAGCTTTGCGCAGAAATCTGG < 41bp 1 0.663382635684532 NA NA experiment 0.673234728630935 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment MVB12A ENSG00000141971 CDS Human protein_coding chr19:17531163 chr19:17531169 synonymous SNV . 0 27 hm7G_associated_SNPs_776 0 0 1 0 2 MVB12A chr19:17531220 5'GT 17531220 Upstream 52bp 727 chr1 228285083 228285083 1 + C T LUSC 228285071 + 228285051 228285091 41 GTGGAAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTG GTGGAAACCGTGGAGTACAAGAACATCAGCTTTACTGTGTG < 41bp 1 0.655902880094894 NA NA experiment 0.688194239810212 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228285071 chr1:228285083 synonymous SNV . 0 33 hm7G_associated_SNPs_777 0 0 1 0 1 ARF1 chr1:228285153 5'GT 228285153 Upstream 71bp 728 chr19 55899328 55899328 1 + G T LUSC 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCTGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.780778397235227 NA NA experiment 0.438443205529545 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899328 stopgain 0.997 1 5 hm7G_associated_SNPs_778 0 0 0 0 2 RPL28 chr19:55899298 3'AG 55899298 Downstream 31bp 729 chr19 55899328 55899328 1 + G T LUSC 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCTGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.780778397235227 NA NA experiment 0.438443205529545 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899328 stopgain 0.997 1 5 hm7G_associated_SNPs_778 0 0 0 0 2 RPL28 chr19:55899416 5'GT 55899416 Upstream 89bp 730 chr4 56212685 56212685 1 + C T LUSC 56212671 + 56212651 56212691 41 ATCCGCTATGGGAAAACCAAGTGTGGGGAGCCGTCGCGCCC ATCCGCTATGGGAAAACCAAGTGTGGGGAGCCGTTGCGCCC < 41bp 1 0.755622220725496 NA NA experiment 0.488755558549007 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56212671 chr4:56212685 nonsynonymous SNV 0.137 0 35 hm7G_associated_SNPs_779 0 0 1 0 1 SRD5A3 chr4:56212724 5'GT 56212724 Upstream 40bp 731 chr19 59061834 59061834 1 + G T LUSC 59061824 + 59061804 59061844 41 GAGGCCTTCGGTGACACCAAGTTCTCTGCTGTGCTGGTGGA GAGGCCTTCGGTGACACCAAGTTCTCTGCTTTGCTGGTGGA < 41bp 1 0.687735876284204 NA NA experiment 0.624528247431591 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59061824 chr19:59061834 nonsynonymous SNV 0.999 0 31 hm7G_associated_SNPs_780 0 0 1 0 1 TRIM28 chr19:59061744 3'AG 59061744 Downstream 91bp 732 chr17 27935921 27935921 1 + C T LUSC 27935923 + 27935903 27935943 41 CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTAGACA CTACAAAGTGTGGAAGAGTGGCCAGAACCTGAGGGTAGACA < 41bp 1 0.628572750546218 NA NA experiment 0.742854498907564 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935923 chr17:27935921 synonymous SNV . 0 19 hm7G_associated_SNPs_782 0 0 0 1 2 ANKRD13B chr17:27935869 3'AG 27935869 Downstream 53bp 733 chr17 27935921 27935921 1 + C T LUSC 27935923 + 27935903 27935943 41 CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTAGACA CTACAAAGTGTGGAAGAGTGGCCAGAACCTGAGGGTAGACA < 41bp 1 0.628572750546218 NA NA experiment 0.742854498907564 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935923 chr17:27935921 synonymous SNV . 0 19 hm7G_associated_SNPs_782 0 0 0 1 2 ANKRD13B chr17:27936012 5'GT 27936012 Upstream 92bp 734 chr11 111896384 111896384 1 + C T LUSC 111896387 + 111896367 111896407 41 ACTGTGCGGCTGGACCCCCAGTTCTGGGGCCACGCCGCGGA ACTGTGCGGCTGGACCCTCAGTTCTGGGGCCACGCCGCGGA < 41bp 1 0.62647554131615 NA NA experiment 0.747048917367699 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DLAT ENSG00000150768 CDS Human protein_coding chr11:111896387 chr11:111896384 nonsynonymous SNV 0.023 0 18 hm7G_associated_SNPs_783 0 0 1 0 2 DLAT chr11:111896348 3'AG 111896348 Downstream 37bp 735 chr11 111896384 111896384 1 + C T LUSC 111896387 + 111896367 111896407 41 ACTGTGCGGCTGGACCCCCAGTTCTGGGGCCACGCCGCGGA ACTGTGCGGCTGGACCCTCAGTTCTGGGGCCACGCCGCGGA < 41bp 1 0.62647554131615 NA NA experiment 0.747048917367699 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DLAT ENSG00000150768 CDS Human protein_coding chr11:111896387 chr11:111896384 nonsynonymous SNV 0.023 0 18 hm7G_associated_SNPs_783 0 0 1 0 2 DLAT chr11:111896475 5'GT 111896475 Upstream 92bp 736 chr3 128990639 128990639 1 + G T LUSC 128990659 + 128990639 128990679 41 GGTCTTGGGCCCCTCTTCAAGTCCTCGCCTGAGCCCGTGGC TGTCTTGGGCCCCTCTTCAAGTCCTCGCCTGAGCCCGTGGC < 41bp 1 0.657191454107511 NA NA experiment 0.685617091784977 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment COPG1 ENSG00000181789 CDS Human protein_coding chr3:128990659 chr3:128990639 nonsynonymous SNV 0.136 2 1 hm7G_associated_SNPs_784 0 0 1 0 1 COPG1 chr3:128990610 3'AG 128990610 Downstream 30bp 737 chr7 73105283 73105283 1 + A T LUSC 73105282 + 73105262 73105302 41 TGGCTCTGTAATGCTAACAAGAAGTCTGAAAACCCTGCCAA TGGCTCTGTAATGCTAACAAGTAGTCTGAAAACCCTGCCAA < 41bp 1 0.456140867668284 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control BUD23 ENSG00000071462 CDS Human protein_coding chr7:73105282 chr7:73105283 stopgain 0.994 1 22 hm7G_associated_SNPs_785 0 0 1 0 2 BUD23 chr7:73105246 3'AG 73105246 Downstream 38bp 738 chr7 73105283 73105283 1 + A T LUSC 73105282 + 73105262 73105302 41 TGGCTCTGTAATGCTAACAAGAAGTCTGAAAACCCTGCCAA TGGCTCTGTAATGCTAACAAGTAGTCTGAAAACCCTGCCAA < 41bp 1 0.456140867668284 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control BUD23 ENSG00000071462 CDS Human protein_coding chr7:73105282 chr7:73105283 stopgain 0.994 1 22 hm7G_associated_SNPs_785 0 0 1 0 2 BUD23 chr7:73105342 5'GT 73105342 Upstream 60bp 739 chr12 53689355 53689355 1 + G T LUSC 53689341 + 53689321 53689361 41 ACTTCCTCTTCGTTAAGTCGGCCTTCCCAACATGGCGCAGT ACTTCCTCTTCGTTAAGTCGGCCTTCCCAACATGTCGCAGT < 41bp 1 0.367040264487192 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PFDN5 ENSG00000123349 CDS Human protein_coding chr12:53689341 chr12:53689355 nonsynonymous SNV 1.000 3 35 hm7G_associated_SNPs_787 0 0 1 0 1 PFDN5 chr12:53689423 5'GT 53689423 Upstream 69bp 740 chr3 33155645 33155645 1 + G A MESO 33155634 + 33155614 33155654 41 GTGCGTGGCCTGCGCGCTGCGCGCCGGGCGCGCCCAATACG GTGCGTGGCCTGCGCGCTGCGCGCCGGGCGCACCCAATACG < 41bp 1 0.395052469690006 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CRTAP ENSG00000170275 CDS Human protein_coding chr3:33155634 chr3:33155645 nonsynonymous SNV 0.924 2 32 hm7G_associated_SNPs_788 0 0 1 0 1 CRTAP chr3:33155703 5'GT 33155703 Upstream 59bp 741 chr3 183894819 183894819 1 + A G MESO 183894814 + 183894794 183894834 41 TTATTCATCTATAATCACAAGGGGGAGGTGCTCATCTCCCG TTATTCATCTATAATCACAAGGGGGGGGTGCTCATCTCCCG < 41bp 1 0.782109266253068 NA NA experiment 0.435781467493865 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183894814 chr3:183894819 nonsynonymous SNV 1.000 4 26 hm7G_associated_SNPs_789 0 0 1 0 1 AP2M1 chr3:183894855 5'GT 183894855 Upstream 37bp 742 chr14 23235904 23235904 1 + G A OV 23235894 + 23235874 23235914 41 CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCGGGCAAAATGG CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCAGGCAAAATGG < 41bp 1 0.309835541772513 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235894 chr14:23235904 synonymous SNV . 0 31 hm7G_associated_SNPs_790 0 0 1 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 70bp 743 chr2 220099548 220099548 1 + G A OV 220099559 + 220099539 220099579 41 TTTCCCTAGGTTCAGGGTCGGAGGGAGAAGATGGCTTTCAG TTTCCCTAGATTCAGGGTCGGAGGGAGAAGATGGCTTTCAG < 41bp 1 0.694746671001126 NA NA experiment 0.610506657997748 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKZF1 ENSG00000163516 CDS Human protein_coding chr2:220099559 chr2:220099548 nonsynonymous SNV 0.832 1 10 hm7G_associated_SNPs_791 0 0 1 1 1 ANKZF1 chr2:220099548 3'AG 220099548 Downstream 1bp 744 chr2 136528209 136528209 1 + A G OV 136528210 + 136528190 136528230 41 TGGATTATAAAAGAAAACAAGAAGAAGAATTAACAAAAAGA TGGATTATAAAAGAAAACAGGAAGAAGAATTAACAAAAAGA < 41bp 1 0.769833347137289 NA NA experiment 0.460333305725422 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136528210 chr2:136528209 synonymous SNV . 0 20 hm7G_associated_SNPs_792 0 0 1 0 2 UBXN4 chr2:136528141 3'AG 136528141 Downstream 69bp 745 chr2 136528209 136528209 1 + A G OV 136528210 + 136528190 136528230 41 TGGATTATAAAAGAAAACAAGAAGAAGAATTAACAAAAAGA TGGATTATAAAAGAAAACAGGAAGAAGAATTAACAAAAAGA < 41bp 1 0.769833347137289 NA NA experiment 0.460333305725422 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136528210 chr2:136528209 synonymous SNV . 0 20 hm7G_associated_SNPs_792 0 0 1 0 2 UBXN4 chr2:136528305 5'GT 136528305 Upstream 97bp 746 chr12 132414548 132414548 1 + C T OV 132414532 + 132414512 132414552 41 CCGGAGGTCCTGCAGCGGCCGGGCCGGGGGCGACCGCGTCT CCGGAGGTCCTGCAGCGGCCGGGCCGGGGGCGACCGTGTCT < 41bp 1 0.652774645049445 NA NA experiment 0.694450709901111 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PUS1 ENSG00000177192 CDS Human protein_coding chr12:132414532 chr12:132414548 synonymous SNV . 0 37 hm7G_associated_SNPs_793 0 0 1 0 1 PUS1 chr12:132414452 3'AG 132414452 Downstream 97bp 747 chr11 64974077 64974077 1 + C A OV 64974095 + 64974075 64974115 41 TCCACCTTCGAGCCCAACAAGGAGGGCGACTTCGTGCTGCG TCAACCTTCGAGCCCAACAAGGAGGGCGACTTCGTGCTGCG < 41bp 1 0.750538805027611 NA NA experiment 0.498922389944779 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64974095 chr11:64974077 synonymous SNV . 0 3 hm7G_associated_SNPs_795 0 0 1 0 1 CAPN1 chr11:64974145 5'GT 64974145 Upstream 69bp 748 chr3 184052592 184052592 1 + A G OV 184052597 + 184052577 184052617 41 TACAGTTGGGAGAGTAGCAAGGACCCCGCTGAGCAGCAGGG TACAGTTGGGAGAGTGGCAAGGACCCCGCTGAGCAGCAGGG < 41bp 1 0.726898523735057 NA NA experiment 0.546202952529887 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184052597 chr3:184052592 nonsynonymous SNV 1.000 3 16 hm7G_associated_SNPs_796 0 0 1 0 1 EIF4G1 chr3:184052515 3'AG 184052515 Downstream 78bp 749 chr7 99688054 99688054 1 + G T OV 99688038 + 99688018 99688058 41 CTAGTTAAACAGGTGTTCAAGGAGCTGGAGTTTCTGGGTTG CTAGTTAAACAGGTGTTCAAGGAGCTGGAGTTTCTGTGTTG < 41bp 1 0.785962503016314 NA NA experiment 0.428074993967372 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688038 chr7:99688054 nonsynonymous SNV 1.000 4 37 hm7G_associated_SNPs_799 0 0 1 0 2 COPS6 chr7:99688022 3'AG 99688022 Downstream 33bp 750 chr7 99688054 99688054 1 + G T OV 99688038 + 99688018 99688058 41 CTAGTTAAACAGGTGTTCAAGGAGCTGGAGTTTCTGGGTTG CTAGTTAAACAGGTGTTCAAGGAGCTGGAGTTTCTGTGTTG < 41bp 1 0.785962503016314 NA NA experiment 0.428074993967372 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688038 chr7:99688054 nonsynonymous SNV 1.000 4 37 hm7G_associated_SNPs_799 0 0 1 0 2 COPS6 chr7:99688110 5'GT 99688110 Upstream 57bp 751 chr1 46081049 46081049 1 + A G OV 46081029 + 46081009 46081049 41 GGATCGTCTGCTGAATACAAGAAAGAAATTGAGGAACTAAA GGATCGTCTGCTGAATACAAGAAAGAAATTGAGGAACTAAG < 41bp 1 0.690181081752068 NA NA experiment 0.619637836495864 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46081029 chr1:46081049 nonsynonymous SNV 0.996 4 41 hm7G_associated_SNPs_800 0 0 1 0 1 NASP chr1:46080977 3'AG 46080977 Downstream 73bp 752 chr10 17277250 17277250 1 + G T OV 17277237 + 17277217 17277257 41 TTGAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAG TTGAAGCTGCTAACTACCAAGACACTATTGGCCTCCTGCAG < 41bp 1 0.741004029085689 NA NA experiment 0.517991941828623 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment VIM ENSG00000026025 CDS Human protein_coding chr10:17277237 chr10:17277250 nonsynonymous SNV 1.000 4 34 hm7G_associated_SNPs_801 0 0 1 1 1 VIM chr10:17277168 3'AG 17277168 Downstream 83bp 753 chr1 23357064 23357064 1 + C A OV 23357082 + 23357062 23357102 41 TTCCCCCACCACCCCCTCAAGCCCCACCTGAGGAAGAAAAT TTACCCCACCACCCCCTCAAGCCCCACCTGAGGAAGAAAAT < 41bp 1 0.733874617801861 NA NA experiment 0.532250764396279 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control KDM1A ENSG00000004487 CDS Human protein_coding chr1:23357082 chr1:23357064 nonsynonymous SNV 0.999 2 3 hm7G_associated_SNPs_802 0 0 1 0 1 KDM1A chr1:23357127 5'GT 23357127 Upstream 64bp 754 chr1 46083181 46083181 1 + C T OV 46083189 + 46083169 46083209 41 ATGCAAAGAAAGCCAAACAAGAGCCGGAGGTGAACGGAGGC ATGCAAAGAAAGTCAAACAAGAGCCGGAGGTGAACGGAGGC < 41bp 1 0.797613309291934 NA NA experiment 0.404773381416132 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NASP ENSG00000132780 CDS Human protein_coding chr1:46083189 chr1:46083181 nonsynonymous SNV 1.000 1 13 hm7G_associated_SNPs_803 0 0 1 0 2 NASP chr1:46083135 3'AG 46083135 Downstream 47bp 755 chr1 46083181 46083181 1 + C T OV 46083189 + 46083169 46083209 41 ATGCAAAGAAAGCCAAACAAGAGCCGGAGGTGAACGGAGGC ATGCAAAGAAAGTCAAACAAGAGCCGGAGGTGAACGGAGGC < 41bp 1 0.797613309291934 NA NA experiment 0.404773381416132 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NASP ENSG00000132780 CDS Human protein_coding chr1:46083189 chr1:46083181 nonsynonymous SNV 1.000 1 13 hm7G_associated_SNPs_803 0 0 1 0 2 NASP chr1:46083263 5'GT 46083263 Upstream 83bp 756 chr17 39974695 39974695 1 + G T OV 39974688 + 39974668 39974708 41 GGCTCTGGTTGGCTGATCAAGGGCATGGACCAGGGGCTGCT GGCTCTGGTTGGCTGATCAAGGGCATGTACCAGGGGCTGCT < 41bp 1 0.751335137443173 NA NA experiment 0.497329725113655 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974688 chr17:39974695 nonsynonymous SNV 1.000 4 28 hm7G_associated_SNPs_804 0 0 1 0 2 FKBP10 chr17:39974634 3'AG 39974634 Downstream 62bp 757 chr17 39974695 39974695 1 + G T OV 39974688 + 39974668 39974708 41 GGCTCTGGTTGGCTGATCAAGGGCATGGACCAGGGGCTGCT GGCTCTGGTTGGCTGATCAAGGGCATGTACCAGGGGCTGCT < 41bp 1 0.751335137443173 NA NA experiment 0.497329725113655 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974688 chr17:39974695 nonsynonymous SNV 1.000 4 28 hm7G_associated_SNPs_804 0 0 1 0 2 FKBP10 chr17:39974779 5'GT 39974779 Upstream 85bp 758 chr12 12967074 12967074 1 + G T OV 12967064 + 12967044 12967084 41 TATATTTTTCTGAATTCCAAGGGTGTGACAGATGTGTTGTG TATATTTTTCTGAATTCCAAGGGTGTGACATATGTGTTGTG < 41bp 1 0.419945577537154 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control DDX47 ENSG00000213782 CDS Human protein_coding chr12:12967064 chr12:12967074 nonsynonymous SNV 0.995 2 31 hm7G_associated_SNPs_805 0 0 1 0 1 DDX47 chr12:12967158 5'GT 12967158 Upstream 85bp 759 chr1 46081037 46081037 1 + T C OV 46081029 + 46081009 46081049 41 GGATCGTCTGCTGAATACAAGAAAGAAATTGAGGAACTAAA GGATCGTCTGCTGAATACAAGAAAGAAACTGAGGAACTAAA < 41bp 1 0.700254441550767 NA NA experiment 0.599491116898466 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46081029 chr1:46081037 nonsynonymous SNV 0.997 3 29 hm7G_associated_SNPs_806 0 0 1 0 1 NASP chr1:46080977 3'AG 46080977 Downstream 61bp 760 chrX 153627833 153627833 1 + A T OV 153627835 + 153627815 153627855 41 CCAATCCTTTTAGATGCCAAGATTCGCATTTTTGACCTGGG CCAATCCTTTTAGATGCCTAGATTCGCATTTTTGACCTGGG < 41bp 1 0.683966876548684 NA NA experiment 0.632066246902631 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627835 chrX:153627833 stopgain 0.993 0 19 hm7G_associated_SNPs_807 0 0 1 0 1 RPL10 chrX:153627828 3'AG 153627828 Downstream 6bp 761 chr19 10792757 10792757 1 + G A OV 10792745 + 10792725 10792765 41 AAGCCAGGGCTGCAGTACAAGCTGGTGTCCCAGACTGGGCC AAGCCAGGGCTGCAGTACAAGCTGGTGTCCCAAACTGGGCC < 41bp 1 0.584601634198279 NA NA experiment 0.830796731603441 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10792745 chr19:10792757 synonymous SNV . 0 33 hm7G_associated_SNPs_809 0 0 1 0 1 ILF3 chr19:10792669 3'AG 10792669 Downstream 89bp 762 chr1 32768246 32768246 1 + G C OV 32768251 + 32768231 32768271 41 GAAATTACTATTATGGACAAGGCCACCCAATGAAGCCTCAC GAAATTACTATTATGCACAAGGCCACCCAATGAAGCCTCAC < 41bp 1 0.683348586202569 NA NA experiment 0.633302827594862 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32768251 chr1:32768246 nonsynonymous SNV 1.000 4 16 hm7G_associated_SNPs_810 0 0 1 0 2 HDAC1 chr1:32768222 3'AG 32768222 Downstream 25bp 763 chr1 32768246 32768246 1 + G C OV 32768251 + 32768231 32768271 41 GAAATTACTATTATGGACAAGGCCACCCAATGAAGCCTCAC GAAATTACTATTATGCACAAGGCCACCCAATGAAGCCTCAC < 41bp 1 0.683348586202569 NA NA experiment 0.633302827594862 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32768251 chr1:32768246 nonsynonymous SNV 1.000 4 16 hm7G_associated_SNPs_810 0 0 1 0 2 HDAC1 chr1:32768334 5'GT 32768334 Upstream 89bp 764 chr19 39944005 39944005 1 + G T OV 39944009 + 39943989 39944029 41 CCTGTAGGTAGACGAAGAGCGGCGGAGTGCAGCGGGCAGTG CCTGTAGGTAGACGAATAGCGGCGGAGTGCAGCGGGCAGTG < 41bp 1 0.65527856994764 NA NA experiment 0.689442860104719 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944009 chr19:39944005 stopgain 0.945 0 17 hm7G_associated_SNPs_811 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 10bp 765 chr19 39944005 39944005 1 + G T OV 39944010 + 39943990 39944030 41 CTGTAGGTAGACGAAGAGCGGCGGAGTGCAGCGGGCAGTGA CTGTAGGTAGACGAATAGCGGCGGAGTGCAGCGGGCAGTGA < 41bp 1 0.606183658709063 NA NA experiment 0.787632682581873 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944010 chr19:39944005 stopgain 0.945 0 16 hm7G_associated_SNPs_812 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 10bp 766 chr16 2258832 2258832 1 + A G OV 2258812 + 2258792 2258832 41 GTGGAGACTGGAGAGATCAAGAGAGAGTATGGCGGCCACCA GTGGAGACTGGAGAGATCAAGAGAGAGTATGGCGGCCACCG < 41bp 1 0.735844567408302 NA NA experiment 0.528310865183396 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258812 chr16:2258832 nonsynonymous SNV 0.995 1 41 hm7G_associated_SNPs_813 0 0 1 0 1 MLST8 chr16:2258760 3'AG 2258760 Downstream 73bp 767 chr20 57484236 57484236 1 + G A PAAD 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAAGATCGACATGATCAAGCAGGC < 41bp 1 0.717929181727614 NA NA experiment 0.564141636544772 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484236 nonsynonymous SNV 0.990 3 28 hm7G_associated_SNPs_814 0 0 1 0 2 GNAS chr20:57484217 3'AG 57484217 Downstream 20bp 768 chr20 57484236 57484236 1 + G A PAAD 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAAGATCGACATGATCAAGCAGGC < 41bp 1 0.717929181727614 NA NA experiment 0.564141636544772 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484236 nonsynonymous SNV 0.990 3 28 hm7G_associated_SNPs_814 0 0 1 0 2 GNAS chr20:57484271 5'GT 57484271 Upstream 36bp 769 chr4 109546294 109546294 1 + G A PAAD 109546290 + 109546270 109546310 41 ATTTTCCTTTCTAGGATCAAGCGTGCTTTCCTTATCGAGGA ATTTTCCTTTCTAGGATCAAGCGTACTTTCCTTATCGAGGA < 41bp 1 0.76808591578441 NA NA experiment 0.463828168431181 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL34 ENSG00000109475 CDS Human protein_coding chr4:109546290 chr4:109546294 nonsynonymous SNV 1.000 4 25 hm7G_associated_SNPs_815 0 0 1 0 1 RPL34 chr4:109546284 3'AG 109546284 Downstream 11bp 770 chr16 3071282 3071282 1 + C T PAAD 3071265 + 3071245 3071285 41 TGGAGCGCGGACCTGGACAAGTGCATGGACTGCGCGTCTTG TGGAGCGCGGACCTGGACAAGTGCATGGACTGCGCGTTTTG < 41bp 1 0.494330990356328 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control TNFRSF12A ENSG00000006327 CDS Human protein_coding chr16:3071265 chr16:3071282 nonsynonymous SNV 0.947 1 38 hm7G_associated_SNPs_816 0 0 1 0 2 TNFRSF12A chr16:3071216 3'AG 3071216 Downstream 67bp 771 chr16 3071282 3071282 1 + C T PAAD 3071265 + 3071245 3071285 41 TGGAGCGCGGACCTGGACAAGTGCATGGACTGCGCGTCTTG TGGAGCGCGGACCTGGACAAGTGCATGGACTGCGCGTTTTG < 41bp 1 0.494330990356328 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control TNFRSF12A ENSG00000006327 CDS Human protein_coding chr16:3071265 chr16:3071282 nonsynonymous SNV 0.947 1 38 hm7G_associated_SNPs_816 0 0 1 0 2 TNFRSF12A chr16:3071320 5'GT 3071320 Upstream 39bp 772 chr18 46145986 46145986 1 + G A PAAD 46146000 + 46145980 46146020 41 GCAGCCGCTCCCAGGAGATCGAGGAGCTGGAGCGCTTCATC GCAGCCACTCCCAGGAGATCGAGGAGCTGGAGCGCTTCATC < 41bp 1 0.197203711599864 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46146000 chr18:46145986 nonsynonymous SNV 0.997 3 7 hm7G_associated_SNPs_817 0 0 1 0 1 CTIF chr18:46145909 3'AG 46145909 Downstream 78bp 773 chr6 33170375 33170375 1 + G T PAAD 33170388 + 33170368 33170408 41 GGAAGAAGAAAAGGAAACAAGAGGGGTTCAGAAGAGGCGAG GGAAGAATAAAAGGAAACAAGAGGGGTTCAGAAGAGGCGAG < 41bp 1 0.631779843964937 NA NA experiment 0.736440312070126 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SLC39A7 ENSG00000112473 CDS Human protein_coding chr6:33170388 chr6:33170375 stopgain 1.000 0 8 hm7G_associated_SNPs_819 0 0 1 0 1 SLC39A7 chr6:33170337 3'AG 33170337 Downstream 39bp 774 chr16 31200485 31200485 1 + C T PAAD 31200482 + 31200462 31200502 41 ACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACA ACAACACCATCTTTGTGCAAGGCTTGGGTGAGAATGTTACA < 41bp 1 0.779922574399638 NA NA experiment 0.440154851200724 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FUS ENSG00000089280 CDS Human protein_coding chr16:31200482 chr16:31200485 synonymous SNV . 0 24 hm7G_associated_SNPs_820 0 0 1 0 2 FUS chr16:31200444 3'AG 31200444 Downstream 42bp 775 chr16 31200485 31200485 1 + C T PAAD 31200482 + 31200462 31200502 41 ACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACA ACAACACCATCTTTGTGCAAGGCTTGGGTGAGAATGTTACA < 41bp 1 0.779922574399638 NA NA experiment 0.440154851200724 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FUS ENSG00000089280 CDS Human protein_coding chr16:31200482 chr16:31200485 synonymous SNV . 0 24 hm7G_associated_SNPs_820 0 0 1 0 2 FUS chr16:31200547 5'GT 31200547 Upstream 63bp 776 chr19 55899358 55899358 1 + C T PAAD 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACCACCATCAACAAGAATGCTCGCGCCATGCTCAG < 41bp 1 0.744157346658014 NA NA experiment 0.511685306683971 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899358 nonsynonymous SNV 0.726 2 35 hm7G_associated_SNPs_821 0 0 1 0 2 RPL28 chr19:55899298 3'AG 55899298 Downstream 61bp 777 chr19 55899358 55899358 1 + C T PAAD 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACCACCATCAACAAGAATGCTCGCGCCATGCTCAG < 41bp 1 0.744157346658014 NA NA experiment 0.511685306683971 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899358 nonsynonymous SNV 0.726 2 35 hm7G_associated_SNPs_821 0 0 1 0 2 RPL28 chr19:55899416 5'GT 55899416 Upstream 59bp 778 chr7 143002066 143002066 1 + G T PAAD 143002056 + 143002036 143002076 41 AACGCACTTATCAAGGATCGGGAAGGTTATGCTCCTGGCAC AACGCACTTATCAAGGATCGGGAAGGTTATTCTCCTGGCAC < 41bp 1 0.52642292895552 NA NA experiment 0.947154142088959 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CASP2 ENSG00000106144 CDS Human protein_coding chr7:143002056 chr7:143002066 nonsynonymous SNV 0.986 2 31 hm7G_associated_SNPs_822 0 0 1 0 1 CASP2 chr7:143002033 3'AG 143002033 Downstream 34bp 779 chr1 113162485 113162485 1 + C T PAAD 113162466 + 113162446 113162486 41 GCTGGGCCAGAACAGCCCAAGATGGCCGACTTCGATGATCG GCTGGGCCAGAACAGCCCAAGATGGCCGACTTCGATGATTG < 41bp 1 0.795193308481629 NA NA experiment 0.409613383036743 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113162466 chr1:113162485 nonsynonymous SNV 1.000 3 40 hm7G_associated_SNPs_823 0 0 1 0 1 CAPZA1 chr1:113162505 5'GT 113162505 Upstream 21bp 780 chr1 113162484 113162484 1 + T A PAAD 113162466 + 113162446 113162486 41 GCTGGGCCAGAACAGCCCAAGATGGCCGACTTCGATGATCG GCTGGGCCAGAACAGCCCAAGATGGCCGACTTCGATGAACG < 41bp 1 0.794670024015319 NA NA experiment 0.410659951969362 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113162466 chr1:113162484 nonsynonymous SNV 1.000 1 39 hm7G_associated_SNPs_824 0 0 1 0 1 CAPZA1 chr1:113162505 5'GT 113162505 Upstream 22bp 781 chr11 64974115 64974115 1 + G A PRAD 64974095 + 64974075 64974115 41 TCCACCTTCGAGCCCAACAAGGAGGGCGACTTCGTGCTGCG TCCACCTTCGAGCCCAACAAGGAGGGCGACTTCGTGCTGCA < 41bp 1 0.77005856657528 NA NA experiment 0.45988286684944 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64974095 chr11:64974115 nonsynonymous SNV 0.990 5 41 hm7G_associated_SNPs_825 0 0 1 0 1 CAPN1 chr11:64974145 5'GT 64974145 Upstream 31bp 782 chr5 140032579 140032579 1 + G A PRAD 140032574 + 140032554 140032594 41 GGTCACAGTTATTATGCCAAGCTACGCCAACAAGAAATTGA GGTCACAGTTATTATGCCAAGCTACACCAACAAGAAATTGA < 41bp 1 0.743764004354059 NA NA experiment 0.512471991291882 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment IK ENSG00000113141 CDS Human protein_coding chr5:140032574 chr5:140032579 nonsynonymous SNV 0.994 3 26 hm7G_associated_SNPs_826 0 0 1 0 1 IK chr5:140032562 3'AG 140032562 Downstream 18bp 783 chr16 30744630 30744630 1 + C T PRAD 30744641 + 30744621 30744661 41 GTGCTGTTGCGGCAGCTCAAGGCAGAGGGCCACCGAGTGCT GTGCTGTTGTGGCAGCTCAAGGCAGAGGGCCACCGAGTGCT < 41bp 1 0.575822075467729 NA NA experiment 0.848355849064542 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SRCAP ENSG00000080603 CDS Human protein_coding chr16:30744641 chr16:30744630 nonsynonymous SNV 0.992 4 10 hm7G_associated_SNPs_827 0 0 1 0 1 SRCAP chr16:30744601 3'AG 30744601 Downstream 30bp 784 chr1 228284842 228284842 1 + C T PRAD 228284845 + 228284825 228284865 41 ATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGA ATCTTCGCCAACCTCTTTAAGGGCCTTTTTGGCAAAAAAGA < 41bp 1 0.682285020639388 NA NA experiment 0.635429958721223 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228284845 chr1:228284842 synonymous SNV . 0 18 hm7G_associated_SNPs_828 0 0 1 0 1 ARF1 chr1:228284779 3'AG 228284779 Downstream 64bp 785 chr5 94027888 94027888 1 + C T PRAD 94027883 + 94027863 94027903 41 AGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCCTTTG AGGTAGATCTGCTCACTCAAGTGGATGGGGTGACTCCTTTG < 41bp 1 0.758543538740472 NA NA experiment 0.482912922519057 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SLF1 ENSG00000133302 CDS Human protein_coding chr5:94027883 chr5:94027888 synonymous SNV . 0 26 hm7G_associated_SNPs_829 0 0 1 0 1 SLF1 chr5:94027961 5'GT 94027961 Upstream 74bp 786 chr14 23235889 23235889 1 + A T PRAD 23235894 + 23235874 23235914 41 CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCGGGCAAAATGG CTGCGCAGGCGCAAATGCAAGTCCTCTTCCGGGCAAAATGG < 41bp 1 0.309936053833946 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235894 chr14:23235889 nonsynonymous SNV 0.001 0 16 hm7G_associated_SNPs_831 0 0 0 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 85bp 787 chr1 32768264 32768264 1 + A C READ 32768251 + 32768231 32768271 41 GAAATTACTATTATGGACAAGGCCACCCAATGAAGCCTCAC GAAATTACTATTATGGACAAGGCCACCCAATGACGCCTCAC < 41bp 1 0.734819835524816 NA NA experiment 0.530360328950368 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32768251 chr1:32768264 nonsynonymous SNV 1.000 4 34 hm7G_associated_SNPs_834 0 0 1 0 2 HDAC1 chr1:32768222 3'AG 32768222 Downstream 43bp 788 chr1 32768264 32768264 1 + A C READ 32768251 + 32768231 32768271 41 GAAATTACTATTATGGACAAGGCCACCCAATGAAGCCTCAC GAAATTACTATTATGGACAAGGCCACCCAATGACGCCTCAC < 41bp 1 0.734819835524816 NA NA experiment 0.530360328950368 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32768251 chr1:32768264 nonsynonymous SNV 1.000 4 34 hm7G_associated_SNPs_834 0 0 1 0 2 HDAC1 chr1:32768334 5'GT 32768334 Upstream 71bp 789 chr1 32794696 32794696 1 + T G READ 32794692 + 32794672 32794712 41 ATCGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCC ATCGGGGCTGGCAAAGGCAAGTATGATGCTGTTAACTACCC < 41bp 1 0.546207693718636 NA NA experiment 0.907584612562729 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32794692 chr1:32794696 nonsynonymous SNV 1.000 4 25 hm7G_associated_SNPs_835 0 0 1 0 2 HDAC1 chr1:32794669 3'AG 32794669 Downstream 28bp 790 chr1 32794696 32794696 1 + T G READ 32794692 + 32794672 32794712 41 ATCGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCC ATCGGGGCTGGCAAAGGCAAGTATGATGCTGTTAACTACCC < 41bp 1 0.546207693718636 NA NA experiment 0.907584612562729 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32794692 chr1:32794696 nonsynonymous SNV 1.000 4 25 hm7G_associated_SNPs_835 0 0 1 0 2 HDAC1 chr1:32794761 5'GT 32794761 Upstream 66bp 791 chr19 10221444 10221444 1 + C A READ 10221447 + 10221427 10221467 41 GGCCTCTGGGATCCCTTCAAGGACGGCGAGCCTGGAGTTGG GGCCTCTGGGATCCCTTAAAGGACGGCGAGCCTGGAGTTGG < 41bp 1 0.767150345021726 NA NA experiment 0.465699309956549 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10221447 chr19:10221444 stopgain 0.002 0 18 hm7G_associated_SNPs_836 0 0 1 0 1 PPAN;PPAN-P2RY11 chr19:10221373 3'AG 10221373 Downstream 72bp 792 chr19 52705202 52705202 1 + C T READ 52705217 + 52705197 52705237 41 CTTCGCCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT CTTCGTCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT < 41bp 1 0.718553286672391 NA NA experiment 0.562893426655217 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705217 chr19:52705202 nonsynonymous SNV . 0 6 hm7G_associated_SNPs_837 0 0 1 0 2 PPP2R1A chr19:52705197 3'AG 52705197 Downstream 6bp 793 chr19 52705202 52705202 1 + C T READ 52705217 + 52705197 52705237 41 CTTCGCCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT CTTCGTCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT < 41bp 1 0.718553286672391 NA NA experiment 0.562893426655217 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705217 chr19:52705202 nonsynonymous SNV . 0 6 hm7G_associated_SNPs_837 0 0 1 0 2 PPP2R1A chr19:52705287 5'GT 52705287 Upstream 86bp 794 chr19 10367393 10367393 1 + A G SARC 10367401 + 10367381 10367421 41 CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGCGGGG CAGAGCTATGCCGAGACCAAGACGAGAGCCGAGGTGCGGGG < 41bp 1 0.791778359501039 NA NA experiment 0.416443280997922 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367401 chr19:10367393 nonsynonymous SNV 0.999 1 13 hm7G_associated_SNPs_838 0 0 1 0 1 MRPL4 chr19:10367384 3'AG 10367384 Downstream 10bp 795 chr14 77935472 77935472 1 + G T SARC 77935462 + 77935442 77935482 41 GACCTTCATCGACAAGAACGGAGAGACTGAGCTGTGCATGG GACCTTCATCGACAAGAACGGAGAGACTGATCTGTGCATGG < 41bp 1 0.704475567899828 NA NA experiment 0.591048864200344 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77935462 chr14:77935472 nonsynonymous SNV 0.999 3 31 hm7G_associated_SNPs_839 0 0 1 0 1 AHSA1 chr14:77935420 3'AG 77935420 Downstream 53bp 796 chr17 80422184 80422184 1 + G T SARC 80422195 + 80422175 80422215 41 CACAAGTTGGCTGATGCCAAGATATTTTTGAGCGACTGCCT CACAAGTTGTCTGATGCCAAGATATTTTTGAGCGACTGCCT < 41bp 1 0.780362447527411 NA NA experiment 0.439275104945178 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment NARF ENSG00000141562 CDS Human protein_coding chr17:80422195 chr17:80422184 nonsynonymous SNV 1.000 1 10 hm7G_associated_SNPs_840 0 0 1 0 1 NARF chr17:80422163 3'AG 80422163 Downstream 22bp 797 chr19 11106941 11106941 1 + G T SARC 11106939 + 11106919 11106959 41 ATCGACCAGAAGAAGGACAAGCGCCTGGCCTACCTCTTGCA ATCGACCAGAAGAAGGACAAGCTCCTGGCCTACCTCTTGCA < 41bp 1 0.584187218382148 NA NA experiment 0.831625563235703 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11106939 chr19:11106941 nonsynonymous SNV 0.999 4 23 hm7G_associated_SNPs_841 0 0 1 0 1 SMARCA4 chr19:11106889 3'AG 11106889 Downstream 53bp 798 chr12 110784105 110784105 1 + G T SARC 110784098 + 110784078 110784118 41 CTCATGGATGAGACGCTCAAGTTTGTGGCCCGCAACTACCT CTCATGGATGAGACGCTCAAGTTTGTGTCCCGCAACTACCT < 41bp 1 0.43378389045904 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110784098 chr12:110784105 nonsynonymous SNV 1.000 2 28 hm7G_associated_SNPs_842 0 0 1 2 1 ATP2A2 chr12:110784126 5'GT 110784126 Upstream 22bp 799 chr1 228285079 228285079 1 + G T SARC 228285071 + 228285051 228285091 41 GTGGAAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTG GTGGAAACCGTGGAGTACAAGAACATCATCTTCACTGTGTG < 41bp 1 0.63081687206035 NA NA experiment 0.7383662558793 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228285071 chr1:228285079 nonsynonymous SNV 1.000 2 29 hm7G_associated_SNPs_845 0 0 1 0 1 ARF1 chr1:228285153 5'GT 228285153 Upstream 75bp 800 chr4 186066920 186066920 1 + G T SARC 186066932 + 186066912 186066952 41 GGGATGCTGCCTGACCCCAAGAACGTGCACATTTTTGTGAG GGGATGCTTCCTGACCCCAAGAACGTGCACATTTTTGTGAG < 41bp 1 0.77233366971717 NA NA experiment 0.45533266056566 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment SLC25A4 ENSG00000151729 CDS Human protein_coding chr4:186066932 chr4:186066920 synonymous SNV . 0 9 hm7G_associated_SNPs_846 0 0 1 0 1 SLC25A4 chr4:186066913 3'AG 186066913 Downstream 8bp 801 chr11 43465050 43465050 1 + G T SARC 43465039 + 43465019 43465059 41 GGCGGCGTCTAGACTTACAAGGAATACGGGTGCTGAAGAAA GGCGGCGTCTAGACTTACAAGGAATACGGGTTCTGAAGAAA < 41bp 1 0.472425640164778 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465039 chr11:43465050 synonymous SNV . 0 32 hm7G_associated_SNPs_847 0 0 1 0 1 TTC17 chr11:43465134 5'GT 43465134 Upstream 85bp 802 chr19 11129649 11129649 1 + G T SARC 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGTCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA < 41bp 1 0.296243723182877 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129649 nonsynonymous SNV 0.975 2 4 hm7G_associated_SNPs_848 0 0 1 0 2 SMARCA4 chr19:11129633 3'AG 11129633 Downstream 17bp 803 chr19 11129649 11129649 1 + G T SARC 11129666 + 11129646 11129686 41 TGGGCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA TGGTCGTACGAGTTTGACAAGTGGGCCCCCTCCGTGGTGAA < 41bp 1 0.296243723182877 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11129666 chr19:11129649 nonsynonymous SNV 0.975 2 4 hm7G_associated_SNPs_848 0 0 1 0 2 SMARCA4 chr19:11129699 5'GT 11129699 Upstream 51bp 804 chr19 14578576 14578576 1 + G T SARC 14578569 + 14578549 14578589 41 CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCCG CTGACCCTCGAAGATTTCAAGTTCCTGTCGGTGCTGGGCCG < 41bp 1 0.65034336579681 NA NA experiment 0.699313268406379 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578569 chr19:14578576 nonsynonymous SNV 0.998 0 28 hm7G_associated_SNPs_849 0 0 1 0 2 PKN1 chr19:14578530 3'AG 14578530 Downstream 47bp 805 chr19 14578576 14578576 1 + G T SARC 14578569 + 14578549 14578589 41 CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCCG CTGACCCTCGAAGATTTCAAGTTCCTGTCGGTGCTGGGCCG < 41bp 1 0.65034336579681 NA NA experiment 0.699313268406379 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578569 chr19:14578576 nonsynonymous SNV 0.998 0 28 hm7G_associated_SNPs_849 0 0 1 0 2 PKN1 chr19:14578605 5'GT 14578605 Upstream 30bp 806 chr12 6647317 6647317 1 + A C SARC 6647313 + 6647293 6647333 41 ACAGGGTGGTGGACCTCATGGCCCACATGGCCTCCAAGGAG ACAGGGTGGTGGACCTCATGGCCCCCATGGCCTCCAAGGAG < 41bp 1 0.570126941998558 NA NA experiment 0.859746116002885 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647313 chr12:6647317 nonsynonymous SNV 0.976 4 25 hm7G_associated_SNPs_854 0 0 1 0 1 GAPDH chr12:6647267 3'AG 6647267 Downstream 51bp 807 chr12 6647317 6647317 1 + A C SARC 6647333 + 6647313 6647353 41 GCCCACATGGCCTCCAAGGAGTAAGACCCCTGGACCACCAG GCCCCCATGGCCTCCAAGGAGTAAGACCCCTGGACCACCAG < 41bp 1 0.772397754865611 NA NA experiment 0.455204490268778 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GAPDH ENSG00000111640 CDS Human protein_coding chr12:6647333 chr12:6647317 nonsynonymous SNV 0.976 4 5 hm7G_associated_SNPs_855 0 0 1 0 1 GAPDH chr12:6647267 3'AG 6647267 Downstream 51bp 808 chr16 70595541 70595541 1 + C G SARC 70595549 + 70595529 70595569 41 TCAGGTATTGGCCATGTCAAGCCGCTCATGGTTGAGCTATT TCAGGTATTGGCGATGTCAAGCCGCTCATGGTTGAGCTATT < 41bp 1 0.66572983839846 NA NA experiment 0.668540323203081 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70595549 chr16:70595541 synonymous SNV . 0 13 hm7G_associated_SNPs_856 0 0 1 0 1 SF3B3 chr16:70595533 3'AG 70595533 Downstream 9bp 809 chr7 73105274 73105274 1 + G A SARC 73105282 + 73105262 73105302 41 TGGCTCTGTAATGCTAACAAGAAGTCTGAAAACCCTGCCAA TGGCTCTGTAATACTAACAAGAAGTCTGAAAACCCTGCCAA < 41bp 1 0.540110893926471 NA NA experiment 0.919778212147059 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control BUD23 ENSG00000071462 CDS Human protein_coding chr7:73105282 chr7:73105274 nonsynonymous SNV 0.998 4 13 hm7G_associated_SNPs_857 0 0 1 0 2 BUD23 chr7:73105246 3'AG 73105246 Downstream 29bp 810 chr7 73105274 73105274 1 + G A SARC 73105282 + 73105262 73105302 41 TGGCTCTGTAATGCTAACAAGAAGTCTGAAAACCCTGCCAA TGGCTCTGTAATACTAACAAGAAGTCTGAAAACCCTGCCAA < 41bp 1 0.540110893926471 NA NA experiment 0.919778212147059 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control BUD23 ENSG00000071462 CDS Human protein_coding chr7:73105282 chr7:73105274 nonsynonymous SNV 0.998 4 13 hm7G_associated_SNPs_857 0 0 1 0 2 BUD23 chr7:73105342 5'GT 73105342 Upstream 69bp 811 chrX 114856623 114856623 1 + C T SARC 114856610 + 114856590 114856630 41 GAACTTCATGAGCTCTTCAAGGAAGCTAATATGCCATTACC GAACTTCATGAGCTCTTCAAGGAAGCTAATATGTCATTACC < 41bp 1 0.570501393544626 NA NA experiment 0.858997212910747 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856610 chrX:114856623 nonsynonymous SNV 1.000 1 34 hm7G_associated_SNPs_858 0 0 1 1 3 PLS3 chrX:114856558 3'AG 114856558 Downstream 66bp 812 chrX 114856623 114856623 1 + C T SARC 114856610 + 114856590 114856630 41 GAACTTCATGAGCTCTTCAAGGAAGCTAATATGCCATTACC GAACTTCATGAGCTCTTCAAGGAAGCTAATATGTCATTACC < 41bp 1 0.570501393544626 NA NA experiment 0.858997212910747 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856610 chrX:114856623 nonsynonymous SNV 1.000 1 34 hm7G_associated_SNPs_858 0 0 1 1 3 PLS3 chrX:114856640 5'GT 114856640 Upstream 18bp 813 chrX 114856623 114856623 1 + C T SARC 114856610 + 114856590 114856630 41 GAACTTCATGAGCTCTTCAAGGAAGCTAATATGCCATTACC GAACTTCATGAGCTCTTCAAGGAAGCTAATATGTCATTACC < 41bp 1 0.570501393544626 NA NA experiment 0.858997212910747 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLS3 ENSG00000102024 CDS Human protein_coding chrX:114856610 chrX:114856623 nonsynonymous SNV 1.000 1 34 hm7G_associated_SNPs_858 0 0 1 1 3 PLS3 chrX:114856721 5'GT 114856721 Upstream 99bp 814 chr19 52719809 52719809 1 + G A SARC 52719814 + 52719794 52719834 41 GATGCCAACCAACATGTCAAGTCTGCCCTGGCCTCAGTCAT GATGCCAACCAACATATCAAGTCTGCCCTGGCCTCAGTCAT < 41bp 1 0.439335184269806 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52719814 chr19:52719809 nonsynonymous SNV 0.999 4 16 hm7G_associated_SNPs_859 0 0 1 0 1 PPP2R1A chr19:52719782 3'AG 52719782 Downstream 28bp 815 chr6 29693266 29693266 1 + C T SARC 29693262 + 29693242 29693282 41 CCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTT CCATCCCCATCGTGGGCATCGTTGTTGGCCTTGTTGTCCTT < 41bp 1 0.15857831835041 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HLA-F ENSG00000204642 CDS Human protein_coding chr6:29693262 chr6:29693266 nonsynonymous SNV 0.035 0 25 hm7G_associated_SNPs_860 0 0 1 0 2 HLA-F chr6:29693224 3'AG 29693224 Downstream 43bp 816 chr6 29693266 29693266 1 + C T SARC 29693262 + 29693242 29693282 41 CCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTT CCATCCCCATCGTGGGCATCGTTGTTGGCCTTGTTGTCCTT < 41bp 1 0.15857831835041 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HLA-F ENSG00000204642 CDS Human protein_coding chr6:29693262 chr6:29693266 nonsynonymous SNV 0.035 0 25 hm7G_associated_SNPs_860 0 0 1 0 2 HLA-F chr6:29693340 5'GT 29693340 Upstream 75bp 817 chr1 10464264 10464264 1 + G T SARC 10464244 + 10464224 10464264 41 TGCCGAGACCTCAAGGCCAAGGGAATTTTATTTGTGGGGAG TGCCGAGACCTCAAGGCCAAGGGAATTTTATTTGTGGGGAT < 41bp 1 0.674032819854111 NA NA experiment 0.651934360291778 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10464244 chr1:10464264 nonsynonymous SNV 0.981 4 41 hm7G_associated_SNPs_861 0 0 1 0 2 PGD chr1:10464218 3'AG 10464218 Downstream 47bp 818 chr1 10464264 10464264 1 + G T SARC 10464244 + 10464224 10464264 41 TGCCGAGACCTCAAGGCCAAGGGAATTTTATTTGTGGGGAG TGCCGAGACCTCAAGGCCAAGGGAATTTTATTTGTGGGGAT < 41bp 1 0.674032819854111 NA NA experiment 0.651934360291778 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10464244 chr1:10464264 nonsynonymous SNV 0.981 4 41 hm7G_associated_SNPs_861 0 0 1 0 2 PGD chr1:10464336 5'GT 10464336 Upstream 73bp 819 chr5 134099710 134099710 1 + G T SARC 134099717 + 134099697 134099737 41 AGAAGTAGAGATAGAGATAGGAGGAGAGAGAGGTCTCGTAG AGAAGTAGAGATATAGATAGGAGGAGAGAGAGGTCTCGTAG < 41bp 1 0.79433865013376 NA NA experiment 0.41132269973248 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DDX46 ENSG00000145833 CDS Human protein_coding chr5:134099717 chr5:134099710 nonsynonymous SNV 1.000 3 14 hm7G_associated_SNPs_862 0 0 1 0 1 DDX46 chr5:134099782 5'GT 134099782 Upstream 73bp 820 chr20 35832344 35832344 1 + G T SARC 35832349 + 35832329 35832369 41 AGGCTGACCTGAGGAGCATCGTGGAGGAGATTGAGGTGTGA AGGCTGACCTGAGGATCATCGTGGAGGAGATTGAGGTGTGA < 41bp 1 0.645683621468724 NA NA experiment 0.708632757062552 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35832349 chr20:35832344 nonsynonymous SNV 0.997 0 16 hm7G_associated_SNPs_864 0 0 1 0 2 RPN2 chr20:35832288 3'AG 35832288 Downstream 57bp 821 chr20 35832344 35832344 1 + G T SARC 35832349 + 35832329 35832369 41 AGGCTGACCTGAGGAGCATCGTGGAGGAGATTGAGGTGTGA AGGCTGACCTGAGGATCATCGTGGAGGAGATTGAGGTGTGA < 41bp 1 0.645683621468724 NA NA experiment 0.708632757062552 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPN2 ENSG00000118705 CDS Human protein_coding chr20:35832349 chr20:35832344 nonsynonymous SNV 0.997 0 16 hm7G_associated_SNPs_864 0 0 1 0 2 RPN2 chr20:35832363 5'GT 35832363 Upstream 20bp 822 chr19 10793271 10793271 1 + A G SKCM 10793266 + 10793246 10793286 41 GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGA GAAGGCAGGGACTCGAGCAAGGGGGGGGACTCGGCTGAGGA < 41bp 1 0.726560450523815 NA NA experiment 0.54687909895237 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793266 chr19:10793271 nonsynonymous SNV 0.511 1 26 hm7G_associated_SNPs_868 0 0 1 0 1 ILF3 chr19:10793213 3'AG 10793213 Downstream 59bp 823 chr20 35812599 35812599 1 + C T SKCM 35812582 + 35812562 35812602 41 GAATGGTTGTTTCCCCCCAAGGTTCAAGCACTGTCTTCCTG GAATGGTTGTTTCCCCCCAAGGTTCAAGCACTGTCTTTCTG < 41bp 1 0.477865760583266 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPN2 ENSG00000118705 CDS Human protein_coding chr20:35812582 chr20:35812599 synonymous SNV . 0 38 hm7G_associated_SNPs_869 0 0 1 0 1 RPN2 chr20:35812583 3'AG 35812583 Downstream 17bp 824 chr20 35812599 35812599 1 + C T SKCM 35812589 + 35812569 35812609 41 TGTTTCCCCCCAAGGTTCAAGCACTGTCTTCCTGTTGGCCC TGTTTCCCCCCAAGGTTCAAGCACTGTCTTTCTGTTGGCCC < 41bp 1 0.531604426214317 NA NA experiment 0.936791147571366 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPN2 ENSG00000118705 CDS Human protein_coding chr20:35812589 chr20:35812599 synonymous SNV . 0 31 hm7G_associated_SNPs_870 0 0 1 0 1 RPN2 chr20:35812583 3'AG 35812583 Downstream 17bp 825 chr1 155279906 155279906 1 + C T SKCM 155279892 + 155279872 155279912 41 ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAG ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTTGTTCAG < 41bp 1 0.720178820457112 NA NA experiment 0.559642359085776 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FDPS ENSG00000160752 CDS Human protein_coding chr1:155279892 chr1:155279906 synonymous SNV . 0 35 hm7G_associated_SNPs_871 0 0 1 0 3 FDPS chr1:155279834 3'AG 155279834 Downstream 73bp 826 chr1 155279906 155279906 1 + C T SKCM 155279892 + 155279872 155279912 41 ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAG ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTTGTTCAG < 41bp 1 0.720178820457112 NA NA experiment 0.559642359085776 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FDPS ENSG00000160752 CDS Human protein_coding chr1:155279892 chr1:155279906 synonymous SNV . 0 35 hm7G_associated_SNPs_871 0 0 1 0 3 FDPS chr1:155279855 3'AG 155279855 Downstream 52bp 827 chr1 155279906 155279906 1 + C T SKCM 155279892 + 155279872 155279912 41 ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAG ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTTGTTCAG < 41bp 1 0.720178820457112 NA NA experiment 0.559642359085776 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FDPS ENSG00000160752 CDS Human protein_coding chr1:155279892 chr1:155279906 synonymous SNV . 0 35 hm7G_associated_SNPs_871 0 0 1 0 3 FDPS chr1:155279996 5'GT 155279996 Upstream 91bp 828 chr4 109546299 109546299 1 + C T SKCM 109546290 + 109546270 109546310 41 ATTTTCCTTTCTAGGATCAAGCGTGCTTTCCTTATCGAGGA ATTTTCCTTTCTAGGATCAAGCGTGCTTTTCTTATCGAGGA < 41bp 1 0.753392460281351 NA NA experiment 0.493215079437298 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL34 ENSG00000109475 CDS Human protein_coding chr4:109546290 chr4:109546299 synonymous SNV . 0 30 hm7G_associated_SNPs_872 0 0 1 0 1 RPL34 chr4:109546284 3'AG 109546284 Downstream 16bp 829 chr19 10221439 10221439 1 + C T SKCM 10221447 + 10221427 10221467 41 GGCCTCTGGGATCCCTTCAAGGACGGCGAGCCTGGAGTTGG GGCCTCTGGGATTCCTTCAAGGACGGCGAGCCTGGAGTTGG < 41bp 1 0.779508112765726 NA NA experiment 0.440983774468549 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10221447 chr19:10221439 synonymous SNV . 0 13 hm7G_associated_SNPs_874 0 0 1 0 1 PPAN;PPAN-P2RY11 chr19:10221373 3'AG 10221373 Downstream 67bp 830 chr2 10263534 10263534 1 + C T SKCM 10263536 + 10263516 10263556 41 AACTAAAGCAGCTGCCCCCGGCGTGGAGGATGAGCCGCTGC AACTAAAGCAGCTGCCCCTGGCGTGGAGGATGAGCCGCTGC < 41bp 1 0.770446291925217 NA NA experiment 0.459107416149566 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RRM2 ENSG00000171848 CDS Human protein_coding chr2:10263536 chr2:10263534 synonymous SNV . 0 19 hm7G_associated_SNPs_875 0 0 1 0 1 RRM2 chr2:10263514 3'AG 10263514 Downstream 21bp 831 chr14 23235902 23235902 1 + C T SKCM 23235894 + 23235874 23235914 41 CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCGGGCAAAATGG CTGCGCAGGCGCAAAAGCAAGTCCTCTTTCGGGCAAAATGG < 41bp 1 0.311943962145968 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235894 chr14:23235902 nonsynonymous SNV 0.854 0 29 hm7G_associated_SNPs_877 0 0 1 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 72bp 832 chr1 36643493 36643493 1 + C T SKCM 36643486 + 36643466 36643506 41 TCTCTTAGCCCCAAATCCAAGGCCAGGCCATCCTCTCCCTC TCTCTTAGCCCCAAATCCAAGGCCAGGTCATCCTCTCCCTC < 41bp 1 0.666599480023784 NA NA experiment 0.666801039952433 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36643486 chr1:36643493 nonsynonymous SNV 0.999 3 28 hm7G_associated_SNPs_878 0 0 1 0 1 MAP7D1 chr1:36643474 3'AG 36643474 Downstream 20bp 833 chr2 220371034 220371034 1 + C T SKCM 220371039 + 220371019 220371059 41 CCGTGGGACGCTGGGCCCGCGTGGAGGGTACCCCCAGTGAC CCGTGGGACGCTGGGTCCGCGTGGAGGGTACCCCCAGTGAC < 41bp 1 0.605628044815242 NA NA experiment 0.788743910369516 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371039 chr2:220371034 nonsynonymous SNV 0.999 2 16 hm7G_associated_SNPs_879 0 0 0 0 1 GMPPA chr2:220370976 3'AG 220370976 Downstream 59bp 834 chr16 28994525 28994525 1 + C T SKCM 28994535 + 28994515 28994555 41 CGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCC CGTGGTGATCTCTACCCGACGCTCCACCGCCGAGGCCTTCC < 41bp 1 0.764561003515972 NA NA experiment 0.470877992968057 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994535 chr16:28994525 nonsynonymous SNV 0.876 4 11 hm7G_associated_SNPs_881 0 0 0 0 2 SPNS1 chr16:28994513 3'AG 28994513 Downstream 13bp 835 chr16 28994525 28994525 1 + C T SKCM 28994535 + 28994515 28994555 41 CGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCC CGTGGTGATCTCTACCCGACGCTCCACCGCCGAGGCCTTCC < 41bp 1 0.764561003515972 NA NA experiment 0.470877992968057 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPNS1 ENSG00000169682 CDS Human protein_coding chr16:28994535 chr16:28994525 nonsynonymous SNV 0.876 4 11 hm7G_associated_SNPs_881 0 0 0 0 2 SPNS1 chr16:28994611 5'GT 28994611 Upstream 87bp 836 chr5 94027899 94027899 1 + C T SKCM 94027883 + 94027863 94027903 41 AGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCCTTTG AGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCTTTTG < 41bp 1 0.719589476569284 NA NA experiment 0.560821046861432 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SLF1 ENSG00000133302 CDS Human protein_coding chr5:94027883 chr5:94027899 nonsynonymous SNV 1.000 4 37 hm7G_associated_SNPs_882 0 0 1 0 1 SLF1 chr5:94027961 5'GT 94027961 Upstream 63bp 837 chr5 94027898 94027898 1 + C G SKCM 94027883 + 94027863 94027903 41 AGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCCTTTG AGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTGCTTTG < 41bp 1 0.776508656216275 NA NA experiment 0.44698268756745 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SLF1 ENSG00000133302 CDS Human protein_coding chr5:94027883 chr5:94027898 nonsynonymous SNV 1.000 3 36 hm7G_associated_SNPs_883 0 0 1 0 1 SLF1 chr5:94027961 5'GT 94027961 Upstream 64bp 838 chr11 57509641 57509641 1 + C T SKCM 57509654 + 57509634 57509674 41 TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAG TCAAATTTCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAG < 41bp 1 0.742722926524021 NA NA experiment 0.514554146951957 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SELENOH ENSG00000211450;ENSG00000254732 CDS Human protein_coding chr11:57509654 chr11:57509641 unknown . 0 8 hm7G_associated_SNPs_885 0 0 1 0 2 SELENOH chr11:57509589 3'AG 57509589 Downstream 53bp 839 chr11 57509641 57509641 1 + C T SKCM 57509654 + 57509634 57509674 41 TCAAATTCCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAG TCAAATTTCCTGAGCCTCAAGAGGTGGTGGAAGAGTTGAAG < 41bp 1 0.742722926524021 NA NA experiment 0.514554146951957 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SELENOH ENSG00000211450;ENSG00000254732 CDS Human other chr11:57509654 chr11:57509641 unknown . 0 8 hm7G_associated_SNPs_885 0 0 1 0 2 TMX2-CTNND1 chr11:57509719 5'GT 57509719 Upstream 79bp 840 chr16 31200472 31200472 1 + C T SKCM 31200482 + 31200462 31200502 41 ACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACA ACAACACCATTTTTGTGCAAGGCCTGGGTGAGAATGTTACA < 41bp 1 0.779776365477855 NA NA experiment 0.440447269044289 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FUS ENSG00000089280 CDS Human protein_coding chr16:31200482 chr16:31200472 synonymous SNV . 0 11 hm7G_associated_SNPs_886 0 0 1 0 2 FUS chr16:31200444 3'AG 31200444 Downstream 29bp 841 chr16 31200472 31200472 1 + C T SKCM 31200482 + 31200462 31200502 41 ACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACA ACAACACCATTTTTGTGCAAGGCCTGGGTGAGAATGTTACA < 41bp 1 0.779776365477855 NA NA experiment 0.440447269044289 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FUS ENSG00000089280 CDS Human protein_coding chr16:31200482 chr16:31200472 synonymous SNV . 0 11 hm7G_associated_SNPs_886 0 0 1 0 2 FUS chr16:31200547 5'GT 31200547 Upstream 76bp 842 chr12 6973281 6973281 1 + C T SKCM 6973265 + 6973245 6973285 41 TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCTC TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCTCCTC < 41bp 1 0.707731934710554 NA NA experiment 0.584536130578893 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment USP5 ENSG00000111667 CDS Human protein_coding chr12:6973265 chr12:6973281 synonymous SNV . 0 37 hm7G_associated_SNPs_888 0 0 1 0 2 USP5 chr12:6973214 3'AG 6973214 Downstream 68bp 843 chr12 6973281 6973281 1 + C T SKCM 6973265 + 6973245 6973285 41 TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCTC TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCTCCTC < 41bp 1 0.707731934710554 NA NA experiment 0.584536130578893 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment USP5 ENSG00000111667 CDS Human protein_coding chr12:6973265 chr12:6973281 synonymous SNV . 0 37 hm7G_associated_SNPs_888 0 0 1 0 2 USP5 chr12:6973359 5'GT 6973359 Upstream 79bp 844 chr16 31200468 31200468 1 + C T SKCM 31200482 + 31200462 31200502 41 ACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACA ACAACATCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACA < 41bp 1 0.777689271946821 NA NA experiment 0.444621456106357 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FUS ENSG00000089280 CDS Human protein_coding chr16:31200482 chr16:31200468 nonsynonymous SNV 0.993 4 7 hm7G_associated_SNPs_889 0 0 1 0 2 FUS chr16:31200444 3'AG 31200444 Downstream 25bp 845 chr16 31200468 31200468 1 + C T SKCM 31200482 + 31200462 31200502 41 ACAACACCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACA ACAACATCATCTTTGTGCAAGGCCTGGGTGAGAATGTTACA < 41bp 1 0.777689271946821 NA NA experiment 0.444621456106357 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FUS ENSG00000089280 CDS Human protein_coding chr16:31200482 chr16:31200468 nonsynonymous SNV 0.993 4 7 hm7G_associated_SNPs_889 0 0 1 0 2 FUS chr16:31200547 5'GT 31200547 Upstream 80bp 846 chr17 74732309 74732309 1 - G A SKCM 74732318 - 74732298 74732338 41 AGTCCTCCCCCAGTGTCCAAGAGGGAATCCAAATCCAGGTC AGTCCTCCCCCAGTGTCCAAGAGGGAATCTAAATCCAGGTC < 41bp 1 0.720284738722344 NA NA experiment 0.559430522555312 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment SRSF2 ENSG00000161547 CDS Human protein_coding chr17:74732318 chr17:74732309 synonymous SNV . 0 30 hm7G_associated_SNPs_890 0 0 1 0 1 SRSF2 chr17:74732236 5'GT 74732236 Upstream 74bp 847 chr17 74732310 74732310 1 - G A SKCM 74732318 - 74732298 74732338 41 AGTCCTCCCCCAGTGTCCAAGAGGGAATCCAAATCCAGGTC AGTCCTCCCCCAGTGTCCAAGAGGGAATTCAAATCCAGGTC < 41bp 1 0.733322025405334 NA NA experiment 0.533355949189331 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment SRSF2 ENSG00000161547 CDS Human protein_coding chr17:74732318 chr17:74732310 nonsynonymous SNV 1.000 4 29 hm7G_associated_SNPs_891 0 0 1 0 1 SRSF2 chr17:74732236 5'GT 74732236 Upstream 75bp 848 chr19 56206590 56206590 1 + C A SKCM 56206572 + 56206552 56206592 41 CAGCCCGCGCCTCCCGCGACGCTCACCCTGAACCAGCTCCG CAGCCCGCGCCTCCCGCGACGCTCACCCTGAACCAGCTACG < 41bp 1 0.526230375937051 NA NA experiment 0.947539248125897 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206572 chr19:56206590 synonymous SNV . 0 39 hm7G_associated_SNPs_892 0 0 1 0 1 EPN1 chr19:56206514 3'AG 56206514 Downstream 77bp 849 chr19 56206591 56206591 1 + C T SKCM 56206572 + 56206552 56206592 41 CAGCCCGCGCCTCCCGCGACGCTCACCCTGAACCAGCTCCG CAGCCCGCGCCTCCCGCGACGCTCACCCTGAACCAGCTCTG < 41bp 1 0.536011500262065 NA NA experiment 0.92797699947587 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206572 chr19:56206591 nonsynonymous SNV 0.666 3 40 hm7G_associated_SNPs_893 0 0 1 0 1 EPN1 chr19:56206514 3'AG 56206514 Downstream 78bp 850 chr14 35780021 35780021 1 + C T SKCM 35780004 + 35779984 35780024 41 GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTCCTGT GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTCTTGT < 41bp 1 0.71252430806813 NA NA experiment 0.574951383863741 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35780004 chr14:35780021 nonsynonymous SNV 1.000 3 38 hm7G_associated_SNPs_895 0 0 1 0 2 PSMA6 chr14:35779946 3'AG 35779946 Downstream 76bp 851 chr14 35780021 35780021 1 + C T SKCM 35780004 + 35779984 35780024 41 GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTCCTGT GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTCTTGT < 41bp 1 0.71252430806813 NA NA experiment 0.574951383863741 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35780004 chr14:35780021 nonsynonymous SNV 1.000 3 38 hm7G_associated_SNPs_895 0 0 1 0 2 PSMA6 chr14:35780101 5'GT 35780101 Upstream 81bp 852 chr14 35780020 35780020 1 + C T SKCM 35780004 + 35779984 35780024 41 GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTCCTGT GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTTCTGT < 41bp 1 0.672578657183907 NA NA experiment 0.654842685632187 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35780004 chr14:35780020 nonsynonymous SNV 1.000 1 37 hm7G_associated_SNPs_896 0 0 1 0 2 PSMA6 chr14:35779946 3'AG 35779946 Downstream 75bp 853 chr14 35780020 35780020 1 + C T SKCM 35780004 + 35779984 35780024 41 GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTCCTGT GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTTCTGT < 41bp 1 0.672578657183907 NA NA experiment 0.654842685632187 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35780004 chr14:35780020 nonsynonymous SNV 1.000 1 37 hm7G_associated_SNPs_896 0 0 1 0 2 PSMA6 chr14:35780101 5'GT 35780101 Upstream 82bp 854 chr20 57484232 57484232 1 + C T SKCM 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAAGATTGACGTGATCAAGCAGGC < 41bp 1 0.742037871027845 NA NA experiment 0.515924257944311 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484232 synonymous SNV . 0 24 hm7G_associated_SNPs_898 0 0 1 0 2 GNAS chr20:57484217 3'AG 57484217 Downstream 16bp 855 chr20 57484232 57484232 1 + C T SKCM 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAAGATTGACGTGATCAAGCAGGC < 41bp 1 0.742037871027845 NA NA experiment 0.515924257944311 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484232 synonymous SNV . 0 24 hm7G_associated_SNPs_898 0 0 1 0 2 GNAS chr20:57484271 5'GT 57484271 Upstream 40bp 856 chr3 142772593 142772593 1 + G T SKCM 142772598 + 142772578 142772618 41 GAATCTCGCTCCAAAGACAAGAAGGAAAAAGATGAGTGTAC GAATCTCGCTCCAAATACAAGAAGGAAAAAGATGAGTGTAC < 41bp 1 0.601679351521214 NA NA experiment 0.796641296957571 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment U2SURP ENSG00000163714 CDS Human protein_coding chr3:142772598 chr3:142772593 nonsynonymous SNV 1.000 2 16 hm7G_associated_SNPs_899 0 0 1 0 1 U2SURP chr3:142772518 3'AG 142772518 Downstream 76bp 857 chr19 59058766 59058766 1 + G A SKCM 59058753 + 59058733 59058773 41 CACTCCCCAGGGCCAGCCAAGTCTCGGGATGGTGAACGTAC CACTCCCCAGGGCCAGCCAAGTCTCGGGATGGTAAACGTAC < 41bp 1 0.682436386017485 NA NA experiment 0.63512722796503 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59058753 chr19:59058766 nonsynonymous SNV 0.991 3 34 hm7G_associated_SNPs_900 0 0 1 0 1 TRIM28 chr19:59058743 3'AG 59058743 Downstream 24bp 858 chr17 41346379 41346379 1 + C T SKCM 41346382 + 41346362 41346402 41 TATAGGAAACTTTTCTTCTGGCTAAAGAAGAAAGACAGCTT TATAGGAAACTTTTCTTTTGGCTAAAGAAGAAAGACAGCTT < 41bp 1 0.683966441571512 NA NA experiment 0.632067116856975 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41346382 chr17:41346379 synonymous SNV . 0 18 hm7G_associated_SNPs_901 0 0 1 0 1 NBR1 chr17:41346367 3'AG 41346367 Downstream 13bp 859 chr19 47646800 47646800 1 + G A SKCM 47646811 + 47646791 47646831 41 CTTGGGGCTGAAATTGCCAAGAATCTCATCTTGGCAGGAGT CTTGGGGCTAAAATTGCCAAGAATCTCATCTTGGCAGGAGT < 41bp 1 0.639106774334246 NA NA experiment 0.721786451331508 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646811 chr19:47646800 nonsynonymous SNV 1.000 4 10 hm7G_associated_SNPs_902 0 0 1 1 2 SAE1 chr19:47646751 3'AG 47646751 Downstream 50bp 860 chr19 47646800 47646800 1 + G A SKCM 47646811 + 47646791 47646831 41 CTTGGGGCTGAAATTGCCAAGAATCTCATCTTGGCAGGAGT CTTGGGGCTAAAATTGCCAAGAATCTCATCTTGGCAGGAGT < 41bp 1 0.639106774334246 NA NA experiment 0.721786451331508 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646811 chr19:47646800 nonsynonymous SNV 1.000 4 10 hm7G_associated_SNPs_902 0 0 1 1 2 SAE1 chr19:47646862 5'GT 47646862 Upstream 63bp 861 chr18 46146020 46146020 1 + C T SKCM 46146000 + 46145980 46146020 41 GCAGCCGCTCCCAGGAGATCGAGGAGCTGGAGCGCTTCATC GCAGCCGCTCCCAGGAGATCGAGGAGCTGGAGCGCTTCATT < 41bp 1 0.197182226295696 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46146000 chr18:46146020 synonymous SNV . 0 41 hm7G_associated_SNPs_905 0 0 0 0 1 CTIF chr18:46146116 5'GT 46146116 Upstream 97bp 862 chr19 10792729 10792729 1 + C T SKCM 10792745 + 10792725 10792765 41 AAGCCAGGGCTGCAGTACAAGCTGGTGTCCCAGACTGGGCC AAGCTAGGGCTGCAGTACAAGCTGGTGTCCCAGACTGGGCC < 41bp 1 0.667987789249909 NA NA experiment 0.664024421500182 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10792745 chr19:10792729 nonsynonymous SNV 0.991 2 5 hm7G_associated_SNPs_906 0 0 1 0 1 ILF3 chr19:10792669 3'AG 10792669 Downstream 61bp 863 chr19 10792728 10792728 1 + C T SKCM 10792745 + 10792725 10792765 41 AAGCCAGGGCTGCAGTACAAGCTGGTGTCCCAGACTGGGCC AAGTCAGGGCTGCAGTACAAGCTGGTGTCCCAGACTGGGCC < 41bp 1 0.645920650117178 NA NA experiment 0.708158699765644 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10792745 chr19:10792728 nonsynonymous SNV 0.995 4 4 hm7G_associated_SNPs_907 0 0 1 0 1 ILF3 chr19:10792669 3'AG 10792669 Downstream 60bp 864 chr6 33243639 33243639 1 + G A SKCM 33243633 + 33243613 33243653 41 GCAGACATTGACCTCACCAAGAGGGCGGGAGAACTCACTGA GCAGACATTGACCTCACCAAGAGGGCAGGAGAACTCACTGA < 41bp 1 0.776690104173029 NA NA experiment 0.446619791653941 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243633 chr6:33243639 synonymous SNV . 0 27 hm7G_associated_SNPs_908 0 0 1 0 1 RPS18 chr6:33243660 5'GT 33243660 Upstream 22bp 865 chr3 9506282 9506282 1 + G T SKCM 9506274 + 9506254 9506294 41 TCACCCAGGAGAAGAGGAGTGTCGAAATGGATACAGCCTCA TCACCCAGGAGAAGAGGAGTGTCGAAATTGATACAGCCTCA < 41bp 1 0.793251914806372 NA NA experiment 0.413496170387256 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SETD5 ENSG00000168137 CDS Human protein_coding chr3:9506274 chr3:9506282 stopgain 1.000 1 29 hm7G_associated_SNPs_909 0 0 1 0 1 SETD5 chr3:9506356 5'GT 9506356 Upstream 75bp 866 chr14 35779998 35779998 1 + A T SKCM 35780004 + 35779984 35780024 41 GCAGCTAACTGGAAATACAAGTATGGCTATGAGATTCCTGT GCAGCTAACTGGAATTACAAGTATGGCTATGAGATTCCTGT < 41bp 1 0.68608201817618 NA NA experiment 0.627835963647639 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PSMA6 ENSG00000100902 CDS Human protein_coding chr14:35780004 chr14:35779998 nonsynonymous SNV 1.000 2 15 hm7G_associated_SNPs_910 0 0 1 0 1 PSMA6 chr14:35779946 3'AG 35779946 Downstream 53bp 867 chr14 105169699 105169699 1 + C T SKCM 105169684 + 105169664 105169704 41 TGTCATGAACGAGCTCTCCGGCAGCGACAACGTGCCCTACG TGTCATGAACGAGCTCTCCGGCAGCGACAACGTGCTCTACG < 41bp 1 0.279118411470449 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105169684 chr14:105169699 nonsynonymous SNV 0.979 4 36 hm7G_associated_SNPs_912 0 0 0 0 2 INF2 chr14:105169632 3'AG 105169632 Downstream 68bp 868 chr14 105169699 105169699 1 + C T SKCM 105169684 + 105169664 105169704 41 TGTCATGAACGAGCTCTCCGGCAGCGACAACGTGCCCTACG TGTCATGAACGAGCTCTCCGGCAGCGACAACGTGCTCTACG < 41bp 1 0.279118411470449 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control INF2 ENSG00000203485 CDS Human protein_coding chr14:105169684 chr14:105169699 nonsynonymous SNV 0.979 4 36 hm7G_associated_SNPs_912 0 0 0 0 2 INF2 chr14:105169791 5'GT 105169791 Upstream 93bp 869 chr11 63756173 63756173 1 + C T SKCM 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCGGTTCTATACAAGGAGTATGCTGAAGATGACAA < 41bp 1 0.783417867660855 NA NA experiment 0.433164264678291 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756173 nonsynonymous SNV . 0 12 hm7G_associated_SNPs_914 0 0 1 0 3 OTUB1 chr11:63756099 3'AG 63756099 Downstream 75bp 870 chr11 63756173 63756173 1 + C T SKCM 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCGGTTCTATACAAGGAGTATGCTGAAGATGACAA < 41bp 1 0.783417867660855 NA NA experiment 0.433164264678291 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756173 nonsynonymous SNV . 0 12 hm7G_associated_SNPs_914 0 0 1 0 3 OTUB1 chr11:63756126 3'AG 63756126 Downstream 48bp 871 chr11 63756173 63756173 1 + C T SKCM 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCGGTTCTATACAAGGAGTATGCTGAAGATGACAA < 41bp 1 0.783417867660855 NA NA experiment 0.433164264678291 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756173 nonsynonymous SNV . 0 12 hm7G_associated_SNPs_914 0 0 1 0 3 OTUB1 chr11:63756224 5'GT 63756224 Upstream 52bp 872 chr11 63756174 63756174 1 + C T SKCM 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCGGTCTTATACAAGGAGTATGCTGAAGATGACAA < 41bp 1 0.789553306199992 NA NA experiment 0.420893387600015 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756174 synonymous SNV . 0 13 hm7G_associated_SNPs_915 0 0 1 0 3 OTUB1 chr11:63756099 3'AG 63756099 Downstream 76bp 873 chr11 63756174 63756174 1 + C T SKCM 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCGGTCTTATACAAGGAGTATGCTGAAGATGACAA < 41bp 1 0.789553306199992 NA NA experiment 0.420893387600015 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756174 synonymous SNV . 0 13 hm7G_associated_SNPs_915 0 0 1 0 3 OTUB1 chr11:63756126 3'AG 63756126 Downstream 49bp 874 chr11 63756174 63756174 1 + C T SKCM 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCGGTCTTATACAAGGAGTATGCTGAAGATGACAA < 41bp 1 0.789553306199992 NA NA experiment 0.420893387600015 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756174 synonymous SNV . 0 13 hm7G_associated_SNPs_915 0 0 1 0 3 OTUB1 chr11:63756224 5'GT 63756224 Upstream 51bp 875 chrX 114863527 114863527 1 + A C SKCM 114863519 + 114863499 114863539 41 TTAATTAATAGATTTTTCAAGAGGTAAAAAGTAGTGATATT TTAATTAATAGATTTTTCAAGAGGTAAACAGTAGTGATATT < 41bp 1 0.510223721235737 NA NA experiment 0.979552557528525 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PLS3 ENSG00000102024 CDS Human protein_coding chrX:114863519 chrX:114863527 nonsynonymous SNV 0.998 2 29 hm7G_associated_SNPs_916 0 0 1 1 1 PLS3 chrX:114863510 3'AG 114863510 Downstream 18bp 876 chr19 14578572 14578572 1 + C T SKCM 14578569 + 14578549 14578589 41 CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCCG CTGACCCTCGAAGATTTCAAGTTTCTGGCGGTGCTGGGCCG < 41bp 1 0.723280037060292 NA NA experiment 0.553439925879416 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578569 chr19:14578572 synonymous SNV . 0 24 hm7G_associated_SNPs_918 0 0 1 0 2 PKN1 chr19:14578530 3'AG 14578530 Downstream 43bp 877 chr19 14578572 14578572 1 + C T SKCM 14578569 + 14578549 14578589 41 CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCCG CTGACCCTCGAAGATTTCAAGTTTCTGGCGGTGCTGGGCCG < 41bp 1 0.723280037060292 NA NA experiment 0.553439925879416 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578569 chr19:14578572 synonymous SNV . 0 24 hm7G_associated_SNPs_918 0 0 1 0 2 PKN1 chr19:14578605 5'GT 14578605 Upstream 34bp 878 chr1 156028139 156028139 1 + C T SKCM 156028148 + 156028128 156028168 41 TGGAGGAGCCCCTCACCCAAGTGGCGGCATCTTAACGGCAT TGGAGGAGCCCTTCACCCAAGTGGCGGCATCTTAACGGCAT < 41bp 1 0.707061168003388 NA NA experiment 0.585877663993223 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156028148 chr1:156028139 nonsynonymous SNV 0.999 2 12 hm7G_associated_SNPs_919 0 0 1 0 1 LAMTOR2 chr1:156028106 3'AG 156028106 Downstream 34bp 879 chr19 55899332 55899332 1 + C T SKCM 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACTACCATCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.731764361805166 NA NA experiment 0.536471276389668 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899332 nonsynonymous SNV 0.997 0 9 hm7G_associated_SNPs_920 0 0 0 0 2 RPL28 chr19:55899298 3'AG 55899298 Downstream 35bp 880 chr19 55899332 55899332 1 + C T SKCM 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACTACCATCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.731764361805166 NA NA experiment 0.536471276389668 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899332 nonsynonymous SNV 0.997 0 9 hm7G_associated_SNPs_920 0 0 0 0 2 RPL28 chr19:55899416 5'GT 55899416 Upstream 85bp 881 chr20 35812661 35812661 1 + A G SKCM 35812662 + 35812642 35812682 41 CCCACTCACTACCTCACCAAGCATGACGTGGAGAGACTAAA CCCACTCACTACCTCACCAGGCATGACGTGGAGAGACTAAA < 41bp 1 0.729301606852536 NA NA experiment 0.541396786294928 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPN2 ENSG00000118705 CDS Human protein_coding chr20:35812662 chr20:35812661 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_922 0 0 1 0 1 RPN2 chr20:35812583 3'AG 35812583 Downstream 79bp 882 chr17 80443419 80443419 1 + G T SKCM 80443411 + 80443391 80443431 41 GGTCACCCTTGAGAAGAACGGAGAGGTGGTGTTACGCTTTG GGTCACCCTTGAGAAGAACGGAGAGGTGTTGTTACGCTTTG < 41bp 1 0.27911286882492 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80443411 chr17:80443419 nonsynonymous SNV 0.016 0 29 hm7G_associated_SNPs_923 0 0 1 1 1 NARF chr17:80443373 3'AG 80443373 Downstream 47bp 883 chr14 23235881 23235881 1 + G A SKCM 23235894 + 23235874 23235914 41 CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCGGGCAAAATGG CTGCGCAAGCGCAAAAGCAAGTCCTCTTCCGGGCAAAATGG < 41bp 1 0.302660150482195 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235894 chr14:23235881 nonsynonymous SNV 0.063 0 8 hm7G_associated_SNPs_924 0 0 0 1 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 93bp 884 chr20 35812603 35812603 1 + T C SKCM 35812589 + 35812569 35812609 41 TGTTTCCCCCCAAGGTTCAAGCACTGTCTTCCTGTTGGCCC TGTTTCCCCCCAAGGTTCAAGCACTGTCTTCCTGCTGGCCC < 41bp 1 0.559438725605832 NA NA experiment 0.881122548788337 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPN2 ENSG00000118705 CDS Human protein_coding chr20:35812589 chr20:35812603 synonymous SNV . 0 35 hm7G_associated_SNPs_925 0 0 1 0 1 RPN2 chr20:35812583 3'AG 35812583 Downstream 21bp 885 chr2 102459096 102459096 1 + G T SKCM 102459092 + 102459072 102459112 41 TGAAACTGAGTATGAGTACAGTGGGAGTGAGGAAGAAGAGG TGAAACTGAGTATGAGTACAGTGGTAGTGAGGAAGAAGAGG < 41bp 1 0.571373236271708 NA NA experiment 0.857253527456583 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102459092 chr2:102459096 synonymous SNV . 0 25 hm7G_associated_SNPs_927 0 0 1 0 2 MAP4K4 chr2:102459071 3'AG 102459071 Downstream 26bp 886 chr2 102459096 102459096 1 + G T SKCM 102459092 + 102459072 102459112 41 TGAAACTGAGTATGAGTACAGTGGGAGTGAGGAAGAAGAGG TGAAACTGAGTATGAGTACAGTGGTAGTGAGGAAGAAGAGG < 41bp 1 0.571373236271708 NA NA experiment 0.857253527456583 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102459092 chr2:102459096 synonymous SNV . 0 25 hm7G_associated_SNPs_927 0 0 1 0 2 MAP4K4 chr2:102459143 5'GT 102459143 Upstream 48bp 887 chr14 23235903 23235903 1 + C T SKCM 23235894 + 23235874 23235914 41 CTGCGCAGGCGCAAAAGCAAGTCCTCTTCCGGGCAAAATGG CTGCGCAGGCGCAAAAGCAAGTCCTCTTCTGGGCAAAATGG < 41bp 1 0.306412962663117 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235894 chr14:23235903 nonsynonymous SNV 0.843 1 30 hm7G_associated_SNPs_929 0 0 1 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 71bp 888 chr19 11145668 11145668 1 + C T SKCM 11145685 + 11145665 11145705 41 CTCCCCTCGTGGATCATCAAGGACGACGCGGAGGTGGAGCG CTCTCCTCGTGGATCATCAAGGACGACGCGGAGGTGGAGCG < 41bp 1 0.6338736859049 NA NA experiment 0.732252628190199 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11145685 chr19:11145668 nonsynonymous SNV 0.260 5 4 hm7G_associated_SNPs_931 0 0 1 0 1 SMARCA4 chr19:11145590 3'AG 11145590 Downstream 79bp 889 chr5 170814963 170814963 1 + C T SKCM 170814974 + 170814954 170814994 41 TGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCC TGGAAGATTTGATGGACATGGACATGAGCCCCCTGAGGCCC < 41bp 1 0.634696727799251 NA NA experiment 0.730606544401497 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NPM1 ENSG00000181163 CDS Human protein_coding chr5:170814974 chr5:170814963 nonsynonymous SNV 1.000 0 10 hm7G_associated_SNPs_932 0 0 1 0 1 NPM1 chr5:170815010 5'GT 170815010 Upstream 48bp 890 chr1 23357066 23357066 1 + C T SKCM 23357082 + 23357062 23357102 41 TTCCCCCACCACCCCCTCAAGCCCCACCTGAGGAAGAAAAT TTCCTCCACCACCCCCTCAAGCCCCACCTGAGGAAGAAAAT < 41bp 1 0.75232752957662 NA NA experiment 0.495344940846761 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control KDM1A ENSG00000004487 CDS Human protein_coding chr1:23357082 chr1:23357066 synonymous SNV . 0 5 hm7G_associated_SNPs_933 0 0 1 0 1 KDM1A chr1:23357127 5'GT 23357127 Upstream 62bp 891 chr6 32946001 32946001 1 + G A SKCM 32945998 + 32945978 32946018 41 AAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGG AAAGAGAAAAAGAAGAAACGGAAAGCAGAGAAGCATCGAGG < 41bp 1 0.508537693537576 NA NA experiment 0.982924612924848 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control BRD2 ENSG00000204256 CDS Human protein_coding chr6:32945998 chr6:32946001 synonymous SNV . 0 24 hm7G_associated_SNPs_934 0 0 1 0 1 BRD2 chr6:32945903 3'AG 32945903 Downstream 99bp 892 chr1 10464254 10464254 1 + T G SKCM 10464244 + 10464224 10464264 41 TGCCGAGACCTCAAGGCCAAGGGAATTTTATTTGTGGGGAG TGCCGAGACCTCAAGGCCAAGGGAATTTTAGTTGTGGGGAG < 41bp 1 0.741266103888564 NA NA experiment 0.517467792222873 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10464244 chr1:10464254 nonsynonymous SNV 0.995 4 31 hm7G_associated_SNPs_935 0 0 1 0 2 PGD chr1:10464218 3'AG 10464218 Downstream 37bp 893 chr1 10464254 10464254 1 + T G SKCM 10464244 + 10464224 10464264 41 TGCCGAGACCTCAAGGCCAAGGGAATTTTATTTGTGGGGAG TGCCGAGACCTCAAGGCCAAGGGAATTTTAGTTGTGGGGAG < 41bp 1 0.741266103888564 NA NA experiment 0.517467792222873 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control PGD ENSG00000142657 CDS Human protein_coding chr1:10464244 chr1:10464254 nonsynonymous SNV 0.995 4 31 hm7G_associated_SNPs_935 0 0 1 0 2 PGD chr1:10464336 5'GT 10464336 Upstream 83bp 894 chr19 10368915 10368915 1 + C T SKCM 10368931 + 10368911 10368951 41 TGGCCCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA TGGCTCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA < 41bp 1 0.511996755317004 NA NA experiment 0.976006489365993 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368931 chr19:10368915 nonsynonymous SNV 0.990 4 5 hm7G_associated_SNPs_942 0 0 1 0 2 MRPL4 chr19:10368898 3'AG 10368898 Downstream 18bp 895 chr19 10368915 10368915 1 + C T SKCM 10368931 + 10368911 10368951 41 TGGCCCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA TGGCTCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA < 41bp 1 0.511996755317004 NA NA experiment 0.976006489365993 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368931 chr19:10368915 nonsynonymous SNV 0.990 4 5 hm7G_associated_SNPs_942 0 0 1 0 2 MRPL4 chr19:10369004 5'GT 10369004 Upstream 90bp 896 chr1 220307845 220307845 1 + C T SKCM 220307834 + 220307814 220307854 41 ATTAACAAGTGTGGCAGCAAGGAAGAGAGCACCTTATAAGT ATTAACAAGTGTGGCAGCAAGGAAGAGAGCATCTTATAAGT < 41bp 1 0.773776448978733 NA NA experiment 0.452447102042533 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment IARS2 ENSG00000067704 CDS Human protein_coding chr1:220307834 chr1:220307845 nonsynonymous SNV 0.988 3 32 hm7G_associated_SNPs_945 0 0 1 0 1 IARS2 chr1:220307852 5'GT 220307852 Upstream 8bp 897 chr22 19506390 19506390 1 + C T SKCM 19506392 + 19506372 19506412 41 GAGCTGAAAGCTGAGGATCGGAGCAAGTTTCTGGACGCACT GAGCTGAAAGCTGAGGATTGGAGCAAGTTTCTGGACGCACT < 41bp 1 0.764030550916764 NA NA experiment 0.471938898166472 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CDC45 ENSG00000093009 CDS Human protein_coding chr22:19506392 chr22:19506390 nonsynonymous SNV 0.984 4 19 hm7G_associated_SNPs_946 1 0 1 0 1 CDC45 chr22:19506367 3'AG 19506367 Downstream 24bp 898 chr18 46145989 46145989 1 + C T SKCM 46146000 + 46145980 46146020 41 GCAGCCGCTCCCAGGAGATCGAGGAGCTGGAGCGCTTCATC GCAGCCGCTTCCAGGAGATCGAGGAGCTGGAGCGCTTCATC < 41bp 1 0.19458279741387 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46146000 chr18:46145989 nonsynonymous SNV 1.000 3 10 hm7G_associated_SNPs_947 0 0 1 0 1 CTIF chr18:46145909 3'AG 46145909 Downstream 81bp 899 chr19 10368916 10368916 1 + C T SKCM 10368931 + 10368911 10368951 41 TGGCCCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA TGGCCTCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA < 41bp 1 0.510512349353154 NA NA experiment 0.978975301293692 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368931 chr19:10368916 nonsynonymous SNV 0.995 4 6 hm7G_associated_SNPs_948 0 0 1 0 2 MRPL4 chr19:10368898 3'AG 10368898 Downstream 19bp 900 chr19 10368916 10368916 1 + C T SKCM 10368931 + 10368911 10368951 41 TGGCCCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA TGGCCTCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA < 41bp 1 0.510512349353154 NA NA experiment 0.978975301293692 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368931 chr19:10368916 nonsynonymous SNV 0.995 4 6 hm7G_associated_SNPs_948 0 0 1 0 2 MRPL4 chr19:10369004 5'GT 10369004 Upstream 89bp 901 chr10 103897786 103897786 1 + C T SKCM 103897772 + 103897752 103897792 41 CCTCCCTTATCTCCCTCATTGAGGATTTTGGGAGCCTTGGA CCTCCCTTATCTCCCTCATTGAGGATTTTGGGAGTCTTGGA < 41bp 1 0.666023979659495 NA NA experiment 0.66795204068101 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103897772 chr10:103897786 synonymous SNV . 0 35 hm7G_associated_SNPs_949 0 0 1 0 1 PPRC1 chr10:103897795 5'GT 103897795 Upstream 10bp 902 chr13 111077171 111077171 1 + G A SKCM 111077170 + 111077150 111077190 41 CAGGGACGTAAAGGAGACAAGGGTGAAAGGGGAGCCCCCGG CAGGGACGTAAAGGAGACAAGAGTGAAAGGGGAGCCCCCGG < 41bp 1 0.79572004967961 NA NA experiment 0.40855990064078 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment COL4A2 ENSG00000134871 CDS Human protein_coding chr13:111077170 chr13:111077171 nonsynonymous SNV 0.940 5 22 hm7G_associated_SNPs_950 0 0 1 0 1 COL4A2 chr13:111077215 5'GT 111077215 Upstream 45bp 903 chr19 36142191 36142191 1 + C T SKCM 36142184 + 36142164 36142204 41 ACCAAAATCAAGAACTACAAGACCGCCCCTTTTGACAGCCG ACCAAAATCAAGAACTACAAGACCGCCTCTTTTGACAGCCG < 41bp 1 0.766131731071214 NA NA experiment 0.467736537857572 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142184 chr19:36142191 nonsynonymous SNV 1.000 4 28 hm7G_associated_SNPs_951 0 0 1 0 2 COX6B1 chr19:36142135 3'AG 36142135 Downstream 57bp 904 chr19 36142191 36142191 1 + C T SKCM 36142184 + 36142164 36142204 41 ACCAAAATCAAGAACTACAAGACCGCCCCTTTTGACAGCCG ACCAAAATCAAGAACTACAAGACCGCCTCTTTTGACAGCCG < 41bp 1 0.766131731071214 NA NA experiment 0.467736537857572 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36142184 chr19:36142191 nonsynonymous SNV 1.000 4 28 hm7G_associated_SNPs_951 0 0 1 0 2 COX6B1 chr19:36142251 5'GT 36142251 Upstream 61bp 905 chr19 10367417 10367417 1 + C A SKCM 10367401 + 10367381 10367421 41 CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGCGGGG CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGAGGGG < 41bp 1 0.781629289409449 NA NA experiment 0.436741421181102 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367401 chr19:10367417 synonymous SNV . 0 37 hm7G_associated_SNPs_955 0 0 1 0 2 MRPL4 chr19:10367384 3'AG 10367384 Downstream 34bp 906 chr19 10367417 10367417 1 + C A SKCM 10367401 + 10367381 10367421 41 CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGCGGGG CAGAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGAGGGG < 41bp 1 0.781629289409449 NA NA experiment 0.436741421181102 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10367401 chr19:10367417 synonymous SNV . 0 37 hm7G_associated_SNPs_955 0 0 1 0 2 MRPL4 chr19:10367501 5'GT 10367501 Upstream 85bp 907 chr16 30095042 30095042 1 + C A SKCM 30095051 + 30095031 30095071 41 GGACAATCGACCGAAAGCAAGAGGTGCCTCATGATGGGCCC GGACAATCGACAGAAAGCAAGAGGTGCCTCATGATGGGCCC < 41bp 1 0.760613666291665 NA NA experiment 0.478772667416669 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095051 chr16:30095042 synonymous SNV . 0 12 hm7G_associated_SNPs_956 0 0 1 0 2 PPP4C chr16:30094976 3'AG 30094976 Downstream 67bp 908 chr16 30095042 30095042 1 + C A SKCM 30095051 + 30095031 30095071 41 GGACAATCGACCGAAAGCAAGAGGTGCCTCATGATGGGCCC GGACAATCGACAGAAAGCAAGAGGTGCCTCATGATGGGCCC < 41bp 1 0.760613666291665 NA NA experiment 0.478772667416669 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095051 chr16:30095042 synonymous SNV . 0 12 hm7G_associated_SNPs_956 0 0 1 0 2 PPP4C chr16:30095102 5'GT 30095102 Upstream 61bp 909 chr19 52705232 52705232 1 + C T STAD 52705217 + 52705197 52705237 41 CTTCGCCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT CTTCGCCTCAACAGCATCAAGAAGCTGTCCACCATTGCCTT < 41bp 1 0.66153502191844 NA NA experiment 0.67692995616312 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705217 chr19:52705232 nonsynonymous SNV . 0 36 hm7G_associated_SNPs_957 0 0 1 0 2 PPP2R1A chr19:52705197 3'AG 52705197 Downstream 36bp 910 chr19 52705232 52705232 1 + C T STAD 52705217 + 52705197 52705237 41 CTTCGCCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT CTTCGCCTCAACAGCATCAAGAAGCTGTCCACCATTGCCTT < 41bp 1 0.66153502191844 NA NA experiment 0.67692995616312 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705217 chr19:52705232 nonsynonymous SNV . 0 36 hm7G_associated_SNPs_957 0 0 1 0 2 PPP2R1A chr19:52705287 5'GT 52705287 Upstream 56bp 911 chr7 127729669 127729669 1 + C T STAD 127729666 + 127729646 127729686 41 CTGCAGTTTGCAGATTCCAAGGGCGATGTGGGGCTGGGCTT CTGCAGTTTGCAGATTCCAAGGGTGATGTGGGGCTGGGCTT < 41bp 1 0.565912102871416 NA NA experiment 0.868175794257167 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127729666 chr7:127729669 synonymous SNV . 0 24 hm7G_associated_SNPs_958 0 0 1 0 1 SND1 chr7:127729744 5'GT 127729744 Upstream 76bp 912 chr15 89858575 89858575 1 + C T STAD 89858560 + 89858540 89858580 41 AGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGA AGCACCTCACGAGACTTCAAGATCAAAGGAAACATTCTAGA < 41bp 1 0.660644096213718 NA NA experiment 0.678711807572565 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89858560 chr15:89858575 synonymous SNV . 0 36 hm7G_associated_SNPs_959 0 0 1 0 2 FANCI chr15:89858513 3'AG 89858513 Downstream 63bp 913 chr15 89858575 89858575 1 + C T STAD 89858560 + 89858540 89858580 41 AGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGA AGCACCTCACGAGACTTCAAGATCAAAGGAAACATTCTAGA < 41bp 1 0.660644096213718 NA NA experiment 0.678711807572565 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89858560 chr15:89858575 synonymous SNV . 0 36 hm7G_associated_SNPs_959 0 0 1 0 2 FANCI chr15:89858620 5'GT 89858620 Upstream 46bp 914 chr12 1346032 1346032 1 + C T STAD 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGCGCGACGATGGGAGGACAATCTCA < 41bp 1 0.574654588357557 NA NA experiment 0.850690823284886 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346032 nonsynonymous SNV 0.626 4 26 hm7G_associated_SNPs_961 0 0 1 0 2 ERC1 chr12:1345935 3'AG 1345935 Downstream 98bp 915 chr12 1346032 1346032 1 + C T STAD 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGCGCGACGATGGGAGGACAATCTCA < 41bp 1 0.574654588357557 NA NA experiment 0.850690823284886 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346032 nonsynonymous SNV 0.626 4 26 hm7G_associated_SNPs_961 0 0 1 0 2 ERC1 chr12:1346070 5'GT 1346070 Upstream 39bp 916 chr1 228335202 228335202 1 + G A STAD 228335188 + 228335168 228335208 41 CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCGGCCCAT CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCAGCCCAT < 41bp 1 0.773734620396053 NA NA experiment 0.452530759207894 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335188 chr1:228335202 nonsynonymous SNV 0.545 0 35 hm7G_associated_SNPs_962 0 0 1 0 2 GUK1 chr1:228335107 3'AG 228335107 Downstream 96bp 917 chr1 228335202 228335202 1 + G A STAD 228335188 + 228335168 228335208 41 CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCGGCCCAT CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCAGCCCAT < 41bp 1 0.773734620396053 NA NA experiment 0.452530759207894 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335188 chr1:228335202 nonsynonymous SNV 0.545 0 35 hm7G_associated_SNPs_962 0 0 1 0 2 GUK1 chr1:228335245 5'GT 228335245 Upstream 44bp 918 chr9 131388887 131388887 1 + G A STAD 131388873 + 131388853 131388893 41 CTGGCCGAGCTGGACCGCCAGATCAAGAGCTTCCGCGTAGC CTGGCCGAGCTGGACCGCCAGATCAAGAGCTTCCACGTAGC < 41bp 1 0.538893348328568 NA NA experiment 0.922213303342863 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131388873 chr9:131388887 nonsynonymous SNV 0.996 1 35 hm7G_associated_SNPs_963 0 0 1 0 1 SPTAN1 chr9:131388966 5'GT 131388966 Upstream 80bp 919 chr10 85901266 85901266 1 + G A STAD 85901270 + 85901250 85901290 41 CACCACCATGTTGGCTGCAAGGCTGGTGTGTCTCCGGACAC CACCACCATGTTGGCTACAAGGCTGGTGTGTCTCCGGACAC < 41bp 1 0.776867447406046 NA NA experiment 0.446265105187908 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GHITM ENSG00000165678 CDS Human protein_coding chr10:85901270 chr10:85901266 nonsynonymous SNV 0.982 2 17 hm7G_associated_SNPs_964 0 0 1 0 1 GHITM chr10:85901218 3'AG 85901218 Downstream 49bp 920 chr6 43096749 43096749 1 + G A STAD 43096743 + 43096723 43096763 41 ACAGCCATTGTCTTCATCAAGCAGCCGTCCTCCCAGGATGC ACAGCCATTGTCTTCATCAAGCAGCCATCCTCCCAGGATGC < 41bp 1 0.496992515817522 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096743 chr6:43096749 synonymous SNV . 0 27 hm7G_associated_SNPs_970 0 0 1 0 1 PTK7 chr6:43096715 3'AG 43096715 Downstream 35bp 921 chr12 12967079 12967079 1 + G C STAD 12967064 + 12967044 12967084 41 TATATTTTTCTGAATTCCAAGGGTGTGACAGATGTGTTGTG TATATTTTTCTGAATTCCAAGGGTGTGACAGATGTCTTGTG < 41bp 1 0.496398389370185 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control DDX47 ENSG00000213782 CDS Human protein_coding chr12:12967064 chr12:12967079 synonymous SNV . 0 36 hm7G_associated_SNPs_971 0 0 1 0 1 DDX47 chr12:12967158 5'GT 12967158 Upstream 80bp 922 chr1 228335194 228335194 1 + C T STAD 228335188 + 228335168 228335208 41 CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCGGCCCAT CAGGGTGTGCGGAACATCAAGGCCACTGATCTGCGGCCCAT < 41bp 1 0.782191050302995 NA NA experiment 0.435617899394011 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335188 chr1:228335194 synonymous SNV . 0 27 hm7G_associated_SNPs_972 0 0 1 0 2 GUK1 chr1:228335107 3'AG 228335107 Downstream 88bp 923 chr1 228335194 228335194 1 + C T STAD 228335188 + 228335168 228335208 41 CAGGGTGTGCGGAACATCAAGGCCACCGATCTGCGGCCCAT CAGGGTGTGCGGAACATCAAGGCCACTGATCTGCGGCCCAT < 41bp 1 0.782191050302995 NA NA experiment 0.435617899394011 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GUK1 ENSG00000143774 CDS Human protein_coding chr1:228335188 chr1:228335194 synonymous SNV . 0 27 hm7G_associated_SNPs_972 0 0 1 0 2 GUK1 chr1:228335245 5'GT 228335245 Upstream 52bp 924 chr7 143002038 143002038 1 + C T STAD 143002056 + 143002036 143002076 41 AACGCACTTATCAAGGATCGGGAAGGTTATGCTCCTGGCAC AATGCACTTATCAAGGATCGGGAAGGTTATGCTCCTGGCAC < 41bp 1 0.621982973833197 NA NA experiment 0.756034052333605 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CASP2 ENSG00000106144 CDS Human protein_coding chr7:143002056 chr7:143002038 synonymous SNV . 0 3 hm7G_associated_SNPs_973 0 0 1 4 1 CASP2 chr7:143002033 3'AG 143002033 Downstream 6bp 925 chr17 36912143 36912143 1 + C T STAD 36912151 + 36912131 36912171 41 CTCAGTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGA CTCAGTGCCCAGTGCCTCAAGTTCCGGCTGAACCTGTATGA < 41bp 1 0.753383539304447 NA NA experiment 0.493232921391106 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMB3 ENSG00000108294 CDS Human other chr17:36912151 chr17:36912143 nonsynonymous SNV 0.994 0 13 hm7G_associated_SNPs_974 0 0 1 0 1 PSMB3 chr17:36912136 3'AG 36912136 Downstream 8bp 926 chr19 52719794 52719794 1 + G A STAD 52719814 + 52719794 52719834 41 GATGCCAACCAACATGTCAAGTCTGCCCTGGCCTCAGTCAT AATGCCAACCAACATGTCAAGTCTGCCCTGGCCTCAGTCAT < 41bp 1 0.510859192797034 NA NA experiment 0.978281614405932 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52719814 chr19:52719794 nonsynonymous SNV 0.999 4 1 hm7G_associated_SNPs_975 0 0 1 0 1 PPP2R1A chr19:52719782 3'AG 52719782 Downstream 13bp 927 chr22 31302253 31302253 1 + C T STAD 31302266 + 31302246 31302286 41 GAGATGGCCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAA GAGATGGTCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAA < 41bp 1 0.752135322774283 NA NA experiment 0.495729354451435 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31302266 chr22:31302253 nonsynonymous SNV 0.999 0 8 hm7G_associated_SNPs_976 0 0 1 0 2 OSBP2 chr22:31302181 3'AG 31302181 Downstream 73bp 928 chr22 31302253 31302253 1 + C T STAD 31302266 + 31302246 31302286 41 GAGATGGCCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAA GAGATGGTCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAA < 41bp 1 0.752135322774283 NA NA experiment 0.495729354451435 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31302266 chr22:31302253 nonsynonymous SNV 0.999 0 8 hm7G_associated_SNPs_976 0 0 1 0 2 OSBP2 chr22:31302184 3'AG 31302184 Downstream 70bp 929 chr19 805056 805056 1 + G A STAD 805072 + 805052 805092 41 CTGCGCATCGACTTTTCCAAGCTCACCAGCCTCAACGTCAA CTGCACATCGACTTTTCCAAGCTCACCAGCCTCAACGTCAA < 41bp 1 0.773843534826184 NA NA experiment 0.452312930347632 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PTBP1 ENSG00000011304 CDS Human protein_coding chr19:805072 chr19:805056 nonsynonymous SNV 0.992 0 5 hm7G_associated_SNPs_977 0 0 1 0 1 PTBP1 chr19:805013 3'AG 805013 Downstream 44bp 930 chr19 49993758 49993758 1 + C T STAD 49993757 + 49993737 49993777 41 TACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTC TACCTGGCTTTCCTCCGCAAGTGGATGAACACCAACCCTTC < 41bp 1 0.765493190429543 NA NA experiment 0.469013619140913 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993757 chr19:49993758 nonsynonymous SNV 1.000 1 22 hm7G_associated_SNPs_978 0 0 1 0 2 RPL13A chr19:49993732 3'AG 49993732 Downstream 27bp 931 chr19 49993758 49993758 1 + C T STAD 49993757 + 49993737 49993777 41 TACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTC TACCTGGCTTTCCTCCGCAAGTGGATGAACACCAACCCTTC < 41bp 1 0.765493190429543 NA NA experiment 0.469013619140913 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL13A ENSG00000142541 CDS Human protein_coding chr19:49993757 chr19:49993758 nonsynonymous SNV 1.000 1 22 hm7G_associated_SNPs_978 0 0 1 0 2 RPL13A chr19:49993833 5'GT 49993833 Upstream 76bp 932 chr1 156100427 156100427 1 + G A STAD 156100417 + 156100397 156100437 41 CTCTTCTTTAGCAATACCAAGAAGGAGGGTGACCTGATAGC CTCTTCTTTAGCAATACCAAGAAGGAGGGTAACCTGATAGC < 41bp 1 0.767391473557374 NA NA experiment 0.465217052885251 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment LMNA ENSG00000160789 CDS Human protein_coding chr1:156100417 chr1:156100427 nonsynonymous SNV 0.644 4 31 hm7G_associated_SNPs_980 0 0 1 0 1 LMNA chr1:156100408 3'AG 156100408 Downstream 20bp 933 chr1 116930005 116930005 1 + T G STAD 116929999 + 116929979 116930019 41 ACTACTCCTGAATGGATCAAGTTTTGTCGGCAGCTCTTTGG ACTACTCCTGAATGGATCAAGTTTTGGCGGCAGCTCTTTGG < 41bp 1 0.591940114422416 NA NA experiment 0.816119771155168 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116929999 chr1:116930005 nonsynonymous SNV 0.997 4 27 hm7G_associated_SNPs_981 0 0 1 0 1 ATP1A1 chr1:116929910 3'AG 116929910 Downstream 96bp 934 chr9 125863928 125863928 1 + T A STAD 125863922 + 125863902 125863942 41 AAAGGCATAAGCTCAACCAAGGAGGTTTTAGATGAGGACAC AAAGGCATAAGCTCAACCAAGGAGGTATTAGATGAGGACAC < 41bp 1 0.654090696378135 NA NA experiment 0.691818607243731 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125863922 chr9:125863928 synonymous SNV . 0 27 hm7G_associated_SNPs_983 0 0 1 0 1 RABGAP1 chr9:125863845 3'AG 125863845 Downstream 84bp 935 chr19 10221461 10221461 1 + G T STAD 10221447 + 10221427 10221467 41 GGCCTCTGGGATCCCTTCAAGGACGGCGAGCCTGGAGTTGG GGCCTCTGGGATCCCTTCAAGGACGGCGAGCCTGTAGTTGG < 41bp 1 0.707239047989372 NA NA experiment 0.585521904021257 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10221447 chr19:10221461 stopgain 0.000 0 35 hm7G_associated_SNPs_984 0 0 1 0 1 PPAN;PPAN-P2RY11 chr19:10221373 3'AG 10221373 Downstream 89bp 936 chr16 732036 732036 1 + A C STAD 732025 + 732005 732045 41 CTCAACTCTTCACAGGACAAGTACATGGCGGACATGGACGA CTCAACTCTTCACAGGACAAGTACATGGCGGCCATGGACGA < 41bp 1 0.738699887939993 NA NA experiment 0.522600224120014 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment STUB1 ENSG00000103266 CDS Human protein_coding chr16:732025 chr16:732036 nonsynonymous SNV 0.970 1 32 hm7G_associated_SNPs_985 0 0 1 0 2 STUB1 chr16:732020 3'AG 732020 Downstream 17bp 937 chr16 732036 732036 1 + A C STAD 732025 + 732005 732045 41 CTCAACTCTTCACAGGACAAGTACATGGCGGACATGGACGA CTCAACTCTTCACAGGACAAGTACATGGCGGCCATGGACGA < 41bp 1 0.738699887939993 NA NA experiment 0.522600224120014 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment STUB1 ENSG00000103266 CDS Human protein_coding chr16:732025 chr16:732036 nonsynonymous SNV 0.970 1 32 hm7G_associated_SNPs_985 0 0 1 0 2 STUB1 chr16:732076 5'GT 732076 Upstream 41bp 938 chr1 28856393 28856393 1 + C T STAD 28856390 + 28856370 28856410 41 GACAGGAAGATGTCACCCAAGCGCATAGCTAAAAGAAGGTC GACAGGAAGATGTCACCCAAGCGTATAGCTAAAAGAAGGTC < 41bp 1 0.764940166715079 NA NA experiment 0.470119666569842 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RCC1 ENSG00000180198 CDS Human protein_coding chr1:28856390 chr1:28856393 synonymous SNV . 0 24 hm7G_associated_SNPs_988 0 0 1 0 1 RCC1 chr1:28856370 3'AG 28856370 Downstream 24bp 939 chr17 72205355 72205355 1 + G A STAD 72205339 + 72205319 72205359 41 CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGTGAA CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACATGAA < 41bp 1 0.738139697000413 NA NA experiment 0.523720605999173 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72205339 chr17:72205355 nonsynonymous SNV 1.000 2 37 hm7G_associated_SNPs_989 0 0 1 0 2 RPL38 chr17:72205326 3'AG 72205326 Downstream 30bp 940 chr17 72205355 72205355 1 + G A STAD 72205339 + 72205319 72205359 41 CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGTGAA CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACATGAA < 41bp 1 0.738139697000413 NA NA experiment 0.523720605999173 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72205339 chr17:72205355 nonsynonymous SNV 1.000 2 37 hm7G_associated_SNPs_989 0 0 1 0 2 RPL38 chr17:72205448 5'GT 72205448 Upstream 94bp 941 chr1 228285066 228285066 1 + T C STAD 228285071 + 228285051 228285091 41 GTGGAAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTG GTGGAAACCGTGGAGCACAAGAACATCAGCTTCACTGTGTG < 41bp 1 0.694350511039388 NA NA experiment 0.611298977921225 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228285071 chr1:228285066 nonsynonymous SNV 0.990 3 16 hm7G_associated_SNPs_990 0 0 1 0 1 ARF1 chr1:228285153 5'GT 228285153 Upstream 88bp 942 chr1 40535894 40535894 1 + A T STAD 40535902 + 40535882 40535922 41 CAGGTGGCTTACATATACAAGTGTGTCAACACGACATTGCA CAGGTGGCTTACTTATACAAGTGTGTCAACACGACATTGCA < 41bp 1 0.524651094713182 NA NA experiment 0.950697810573636 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAP1 ENSG00000131236 CDS Human protein_coding chr1:40535902 chr1:40535894 nonsynonymous SNV 1.000 2 13 hm7G_associated_SNPs_992 0 0 1 0 2 CAP1 chr1:40535831 3'AG 40535831 Downstream 64bp 943 chr1 40535894 40535894 1 + A T STAD 40535902 + 40535882 40535922 41 CAGGTGGCTTACATATACAAGTGTGTCAACACGACATTGCA CAGGTGGCTTACTTATACAAGTGTGTCAACACGACATTGCA < 41bp 1 0.524651094713182 NA NA experiment 0.950697810573636 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAP1 ENSG00000131236 CDS Human protein_coding chr1:40535902 chr1:40535894 nonsynonymous SNV 1.000 2 13 hm7G_associated_SNPs_992 0 0 1 0 2 CAP1 chr1:40535954 5'GT 40535954 Upstream 61bp 944 chr17 45741591 45741591 1 + A G STAD 45741573 + 45741553 45741593 41 TTGATGAGGTGGCTTTACAAGGGATAGAATTCTGGTCCAAT TTGATGAGGTGGCTTTACAAGGGATAGAATTCTGGTCCGAT < 41bp 1 0.70567437455107 NA NA experiment 0.588651250897861 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45741573 chr17:45741591 nonsynonymous SNV 1.000 2 39 hm7G_associated_SNPs_993 0 0 1 0 2 KPNB1 chr17:45741525 3'AG 45741525 Downstream 67bp 945 chr17 45741591 45741591 1 + A G STAD 45741573 + 45741553 45741593 41 TTGATGAGGTGGCTTTACAAGGGATAGAATTCTGGTCCAAT TTGATGAGGTGGCTTTACAAGGGATAGAATTCTGGTCCGAT < 41bp 1 0.70567437455107 NA NA experiment 0.588651250897861 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45741573 chr17:45741591 nonsynonymous SNV 1.000 2 39 hm7G_associated_SNPs_993 0 0 1 0 2 KPNB1 chr17:45741635 5'GT 45741635 Upstream 45bp 946 chr2 204267383 204267383 1 + G A STAD 204267380 + 204267360 204267400 41 AGGGGGCTCGTTGCCCTATAGACGCCCTCCTTCCATTACTT AGGGGGCTCGTTGCCCTATAGACACCCTCCTTCCATTACTT < 41bp 1 0.257832092453058 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204267380 chr2:204267383 nonsynonymous SNV 0.996 4 24 hm7G_associated_SNPs_994 0 0 1 0 2 ABI2 chr2:204267299 3'AG 204267299 Downstream 85bp 947 chr2 204267383 204267383 1 + G A STAD 204267380 + 204267360 204267400 41 AGGGGGCTCGTTGCCCTATAGACGCCCTCCTTCCATTACTT AGGGGGCTCGTTGCCCTATAGACACCCTCCTTCCATTACTT < 41bp 1 0.257832092453058 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204267380 chr2:204267383 nonsynonymous SNV 0.996 4 24 hm7G_associated_SNPs_994 0 0 1 0 2 ABI2 chr2:204267457 5'GT 204267457 Upstream 75bp 948 chr7 74005281 74005281 1 + C T STAD 74005287 + 74005267 74005307 41 AACACGTACGACATCCACCGGCTGGAGAAGATCCTGAAGGC AACACGTACGACATTCACCGGCTGGAGAAGATCCTGAAGGC < 41bp 1 0.575360992903016 NA NA experiment 0.849278014193968 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74005287 chr7:74005281 synonymous SNV . 0 15 hm7G_associated_SNPs_995 0 0 1 0 1 GTF2IRD1 chr7:74005346 5'GT 74005346 Upstream 66bp 949 chr12 104337021 104337021 1 + A C STAD 104337030 + 104337010 104337050 41 TGAGAAAACTAAGGAGAGTCGTGAAGCAGTTGAGAAAGAAT TGAGAAAACTACGGAGAGTCGTGAAGCAGTTGAGAAAGAAT < 41bp 1 0.759426713368943 NA NA experiment 0.481146573262113 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104337030 chr12:104337021 nonsynonymous SNV 0.998 4 12 hm7G_associated_SNPs_996 0 0 1 0 1 HSP90B1 chr12:104337097 5'GT 104337097 Upstream 77bp 950 chrX 153628866 153628866 1 + A G STAD 153628875 + 153628855 153628895 41 CCAGGGTTCACATTGGCCAAGTTATCATGTCCATCCGCACC CCAGGGTTCACGTTGGCCAAGTTATCATGTCCATCCGCACC < 41bp 1 0.752618203899813 NA NA experiment 0.494763592200373 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628875 chrX:153628866 nonsynonymous SNV 1.000 1 12 hm7G_associated_SNPs_997 0 0 0 0 1 RPL10 chrX:153628805 3'AG 153628805 Downstream 62bp 951 chr16 56643249 56643249 1 + T C STAD 56643248 + 56643228 56643268 41 TGCAAAGGGGCGTCGGACAAGTGCAGCTGCTGCGCCTGATG TGCAAAGGGGCGTCGGACAAGCGCAGCTGCTGCGCCTGATG < 41bp 1 0.761112886716629 NA NA experiment 0.477774226566743 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control MT2A ENSG00000125148 CDS Human protein_coding chr16:56643248 chr16:56643249 nonsynonymous SNV 0.999 3 22 hm7G_associated_SNPs_998 0 0 1 0 1 MT2A chr16:56643175 3'AG 56643175 Downstream 75bp 952 chr21 45163612 45163612 1 + G A STAD 45163621 + 45163601 45163641 41 AAAGGTTATACGAGGGACAAGTCGTTCCTGGCCATGGTGGT AAAGGTTATACAAGGGACAAGTCGTTCCTGGCCATGGTGGT < 41bp 1 0.305715279593723 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PDXK ENSG00000160209 CDS Human protein_coding chr21:45163621 chr21:45163612 synonymous SNV . 0 12 hm7G_associated_SNPs_999 0 0 1 0 2 PDXK chr21:45163605 3'AG 45163605 Downstream 8bp 953 chr21 45163612 45163612 1 + G A STAD 45163621 + 45163601 45163641 41 AAAGGTTATACGAGGGACAAGTCGTTCCTGGCCATGGTGGT AAAGGTTATACAAGGGACAAGTCGTTCCTGGCCATGGTGGT < 41bp 1 0.305715279593723 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PDXK ENSG00000160209 CDS Human protein_coding chr21:45163621 chr21:45163612 synonymous SNV . 0 12 hm7G_associated_SNPs_999 0 0 1 0 2 PDXK chr21:45163688 5'GT 45163688 Upstream 77bp 954 chr1 26795419 26795419 1 + A C STAD 26795415 + 26795395 26795435 41 GACATGTATGCAGAGGAGCGGAAGAGGCAGCAGCTGGAGAG GACATGTATGCAGAGGAGCGGAAGCGGCAGCAGCTGGAGAG < 41bp 1 0.780260053080972 NA NA experiment 0.439479893838056 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26795415 chr1:26795419 synonymous SNV . 0 25 hm7G_associated_SNPs_1001 0 0 1 0 2 DHDDS chr1:26795383 3'AG 26795383 Downstream 37bp 955 chr1 26795419 26795419 1 + A C STAD 26795415 + 26795395 26795435 41 GACATGTATGCAGAGGAGCGGAAGAGGCAGCAGCTGGAGAG GACATGTATGCAGAGGAGCGGAAGCGGCAGCAGCTGGAGAG < 41bp 1 0.780260053080972 NA NA experiment 0.439479893838056 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DHDDS ENSG00000117682 CDS Human protein_coding chr1:26795415 chr1:26795419 synonymous SNV . 0 25 hm7G_associated_SNPs_1001 0 0 1 0 2 DHDDS chr1:26795386 3'AG 26795386 Downstream 34bp 956 chr16 23700042 23700042 1 + G A STAD 23700035 + 23700015 23700055 41 CCCATCTTCTGGGTCAGCAAGTGGGTGGACTATTCGGACAA CCCATCTTCTGGGTCAGCAAGTGGGTGAACTATTCGGACAA < 41bp 1 0.715292397335614 NA NA experiment 0.569415205328773 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700035 chr16:23700042 nonsynonymous SNV 1.000 4 28 hm7G_associated_SNPs_1004 0 0 1 0 2 PLK1 chr16:23699989 3'AG 23699989 Downstream 54bp 957 chr16 23700042 23700042 1 + G A STAD 23700035 + 23700015 23700055 41 CCCATCTTCTGGGTCAGCAAGTGGGTGGACTATTCGGACAA CCCATCTTCTGGGTCAGCAAGTGGGTGAACTATTCGGACAA < 41bp 1 0.715292397335614 NA NA experiment 0.569415205328773 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700035 chr16:23700042 nonsynonymous SNV 1.000 4 28 hm7G_associated_SNPs_1004 0 0 1 0 2 PLK1 chr16:23700066 5'GT 23700066 Upstream 25bp 958 chr19 6366288 6366288 1 + C T STAD 6366275 + 6366255 6366295 41 TGGACGTCCCTCAGGGCCAAGCCACAGACATTGCCATCCAG TGGACGTCCCTCAGGGCCAAGCCACAGACATTGTCATCCAG < 41bp 1 0.726618746427166 NA NA experiment 0.546762507145668 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CLPP ENSG00000125656 CDS Human protein_coding chr19:6366275 chr19:6366288 nonsynonymous SNV 1.000 1 34 hm7G_associated_SNPs_1005 0 0 1 0 2 CLPP chr19:6366269 3'AG 6366269 Downstream 20bp 959 chr19 6366288 6366288 1 + C T STAD 6366275 + 6366255 6366295 41 TGGACGTCCCTCAGGGCCAAGCCACAGACATTGCCATCCAG TGGACGTCCCTCAGGGCCAAGCCACAGACATTGTCATCCAG < 41bp 1 0.726618746427166 NA NA experiment 0.546762507145668 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CLPP ENSG00000125656 CDS Human protein_coding chr19:6366275 chr19:6366288 nonsynonymous SNV 1.000 1 34 hm7G_associated_SNPs_1005 0 0 1 0 2 CLPP chr19:6366374 5'GT 6366374 Upstream 87bp 960 chr5 172315710 172315710 1 + T G STAD 172315729 + 172315709 172315749 41 ATCTACAGGAAGGTGCCCAAGGACCTTACGCAGCCAACGTA AGCTACAGGAAGGTGCCCAAGGACCTTACGCAGCCAACGTA < 41bp 1 0.368990036510878 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315729 chr5:172315710 nonsynonymous SNV 1.000 4 2 hm7G_associated_SNPs_1008 0 0 1 0 2 ERGIC1 chr5:172315702 3'AG 172315702 Downstream 9bp 961 chr5 172315710 172315710 1 + T G STAD 172315729 + 172315709 172315749 41 ATCTACAGGAAGGTGCCCAAGGACCTTACGCAGCCAACGTA AGCTACAGGAAGGTGCCCAAGGACCTTACGCAGCCAACGTA < 41bp 1 0.368990036510878 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172315729 chr5:172315710 nonsynonymous SNV 1.000 4 2 hm7G_associated_SNPs_1008 0 0 1 0 2 ERGIC1 chr5:172315763 5'GT 172315763 Upstream 54bp 962 chr17 39976544 39976544 1 + G A STAD 39976528 + 39976508 39976548 41 ATTCTGGCCTCAGGAGACAAGATCCCTGGCTCTGCCGTGCT ATTCTGGCCTCAGGAGACAAGATCCCTGGCTCTGCCATGCT < 41bp 1 0.762056983093087 NA NA experiment 0.475886033813826 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39976528 chr17:39976544 nonsynonymous SNV 0.257 5 37 hm7G_associated_SNPs_1009 0 0 1 0 1 FKBP10 chr17:39976521 3'AG 39976521 Downstream 24bp 963 chr16 2258808 2258808 1 + T A STAD 2258812 + 2258792 2258832 41 GTGGAGACTGGAGAGATCAAGAGAGAGTATGGCGGCCACCA GTGGAGACTGGAGAGAACAAGAGAGAGTATGGCGGCCACCA < 41bp 1 0.778711016756848 NA NA experiment 0.442577966486304 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MLST8 ENSG00000167965 CDS Human protein_coding chr16:2258812 chr16:2258808 nonsynonymous SNV 0.998 1 17 hm7G_associated_SNPs_1011 0 0 1 0 1 MLST8 chr16:2258760 3'AG 2258760 Downstream 49bp 964 chr2 181846772 181846772 1 + G A STAD 181846753 + 181846733 181846773 41 TCTCTTTAAAAGTTTTCCAAGAGATAACTTCACCAAGATGT TCTCTTTAAAAGTTTTCCAAGAGATAACTTCACCAAGATAT < 41bp 1 0.769293652715771 NA NA experiment 0.461412694568459 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181846753 chr2:181846772 nonsynonymous SNV 1.000 2 40 hm7G_associated_SNPs_1014 0 0 1 0 1 UBE2E3 chr2:181846745 3'AG 181846745 Downstream 28bp 965 chr19 50338287 50338287 1 + C T STAD 50338272 + 50338252 50338292 41 GTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCGTGCT GTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGTGTGCT < 41bp 1 0.617398333664207 NA NA experiment 0.765203332671585 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338272 chr19:50338287 synonymous SNV . 0 36 hm7G_associated_SNPs_1015 0 0 0 0 1 MED25 chr19:50338243 3'AG 50338243 Downstream 45bp 966 chr19 55899351 55899351 1 + C T STAD 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACCACCATCAACAAGAATGCTTGCGCCACGCTCAG < 41bp 1 0.738679423824434 NA NA experiment 0.522641152351132 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899351 nonsynonymous SNV 0.479 1 28 hm7G_associated_SNPs_1021 0 0 1 0 2 RPL28 chr19:55899298 3'AG 55899298 Downstream 54bp 967 chr19 55899351 55899351 1 + C T STAD 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACCACCATCAACAAGAATGCTTGCGCCACGCTCAG < 41bp 1 0.738679423824434 NA NA experiment 0.522641152351132 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899351 nonsynonymous SNV 0.479 1 28 hm7G_associated_SNPs_1021 0 0 1 0 2 RPL28 chr19:55899416 5'GT 55899416 Upstream 66bp 968 chr9 131388890 131388890 1 + T C STAD 131388873 + 131388853 131388893 41 CTGGCCGAGCTGGACCGCCAGATCAAGAGCTTCCGCGTAGC CTGGCCGAGCTGGACCGCCAGATCAAGAGCTTCCGCGCAGC < 41bp 1 0.593086893259156 NA NA experiment 0.813826213481687 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131388873 chr9:131388890 nonsynonymous SNV 0.998 4 38 hm7G_associated_SNPs_1022 0 0 1 0 1 SPTAN1 chr9:131388966 5'GT 131388966 Upstream 77bp 969 chr19 805052 805052 1 + C T STAD 805072 + 805052 805092 41 CTGCGCATCGACTTTTCCAAGCTCACCAGCCTCAACGTCAA TTGCGCATCGACTTTTCCAAGCTCACCAGCCTCAACGTCAA < 41bp 1 0.781377313286269 NA NA experiment 0.437245373427462 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PTBP1 ENSG00000011304 CDS Human protein_coding chr19:805072 chr19:805052 synonymous SNV . 0 1 hm7G_associated_SNPs_1023 0 0 1 0 1 PTBP1 chr19:805013 3'AG 805013 Downstream 40bp 970 chr3 50129595 50129595 1 + G A STAD 50129596 + 50129576 50129616 41 AAAAGATCTAGTGATGATCGGAGGGGTGATAGATATGATGA AAAAGATCTAGTGATGATCAGAGGGGTGATAGATATGATGA < 41bp 1 0.798346256995003 NA NA experiment 0.403307486009994 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RBM5 ENSG00000003756 CDS Human protein_coding chr3:50129596 chr3:50129595 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_1024 0 0 1 0 1 RBM5 chr3:50129641 5'GT 50129641 Upstream 47bp 971 chr19 50270389 50270389 1 + T G STAD 50270408 + 50270388 50270428 41 ATCATGCCGGCCGTGTCCAAGGGCGATGGGATGCGGGGGCT AGCATGCCGGCCGTGTCCAAGGGCGATGGGATGCGGGGGCT < 41bp 1 0.793655305343568 NA NA experiment 0.412689389312863 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control AP2A1 ENSG00000196961 UTR5 Human protein_coding chr19:50270408 chr19:50270389 . . 0 2 hm7G_associated_SNPs_1025 0 0 1 0 1 AP2A1 chr19:50270457 5'GT 50270457 Upstream 69bp 972 chr2 204267367 204267367 1 + T A STAD 204267380 + 204267360 204267400 41 AGGGGGCTCGTTGCCCTATAGACGCCCTCCTTCCATTACTT AGGGGGCACGTTGCCCTATAGACGCCCTCCTTCCATTACTT < 41bp 1 0.252056733640301 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204267380 chr2:204267367 nonsynonymous SNV 0.981 3 8 hm7G_associated_SNPs_1026 0 0 0 0 2 ABI2 chr2:204267299 3'AG 204267299 Downstream 69bp 973 chr2 204267367 204267367 1 + T A STAD 204267380 + 204267360 204267400 41 AGGGGGCTCGTTGCCCTATAGACGCCCTCCTTCCATTACTT AGGGGGCACGTTGCCCTATAGACGCCCTCCTTCCATTACTT < 41bp 1 0.252056733640301 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204267380 chr2:204267367 nonsynonymous SNV 0.981 3 8 hm7G_associated_SNPs_1026 0 0 0 0 2 ABI2 chr2:204267457 5'GT 204267457 Upstream 91bp 974 chr9 131388889 131388889 1 + G A STAD 131388873 + 131388853 131388893 41 CTGGCCGAGCTGGACCGCCAGATCAAGAGCTTCCGCGTAGC CTGGCCGAGCTGGACCGCCAGATCAAGAGCTTCCGCATAGC < 41bp 1 0.56183564248956 NA NA experiment 0.87632871502088 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131388873 chr9:131388889 nonsynonymous SNV 0.996 4 37 hm7G_associated_SNPs_1027 0 0 1 0 1 SPTAN1 chr9:131388966 5'GT 131388966 Upstream 78bp 975 chr16 31199678 31199678 1 + G A STAD 31199660 + 31199640 31199680 41 CTAAAGGCCCTCGGGACCAAGGATCACGTCATGACTCCGGT CTAAAGGCCCTCGGGACCAAGGATCACGTCATGACTCCAGT < 41bp 1 0.706792580776595 NA NA experiment 0.58641483844681 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FUS ENSG00000089280 CDS Human protein_coding chr16:31199660 chr16:31199678 nonsynonymous SNV 0.914 2 39 hm7G_associated_SNPs_1028 0 0 1 0 1 FUS chr16:31199678 5'GT 31199678 Upstream 1bp 976 chr20 57485046 57485046 1 + C G TGCT 57485045 + 57485025 57485065 41 GTGATCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAA GTGATCCTGTTCCTCAACAAGGAAGATCTGCTCGCTGAGAA < 41bp 1 0.634173173440482 NA NA experiment 0.731653653119037 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485045 chr20:57485046 nonsynonymous SNV 1.000 5 22 hm7G_associated_SNPs_1029 0 0 1 3 2 GNAS chr20:57485006 3'AG 57485006 Downstream 41bp 977 chr20 57485046 57485046 1 + C G TGCT 57485045 + 57485025 57485065 41 GTGATCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAA GTGATCCTGTTCCTCAACAAGGAAGATCTGCTCGCTGAGAA < 41bp 1 0.634173173440482 NA NA experiment 0.731653653119037 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485045 chr20:57485046 nonsynonymous SNV 1.000 5 22 hm7G_associated_SNPs_1029 0 0 1 3 2 GNAS chr20:57485136 5'GT 57485136 Upstream 91bp 978 chr20 57485046 57485046 1 + C G TGCT 57485049 + 57485029 57485069 41 TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAAGTC TCCTGTTCCTCAACAAGGAAGATCTGCTCGCTGAGAAAGTC < 41bp 1 0.552524500796739 NA NA experiment 0.894950998406522 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485049 chr20:57485046 nonsynonymous SNV 1.000 5 18 hm7G_associated_SNPs_1030 0 0 1 3 2 GNAS chr20:57485006 3'AG 57485006 Downstream 41bp 979 chr20 57485046 57485046 1 + C G TGCT 57485049 + 57485029 57485069 41 TCCTGTTCCTCAACAAGCAAGATCTGCTCGCTGAGAAAGTC TCCTGTTCCTCAACAAGGAAGATCTGCTCGCTGAGAAAGTC < 41bp 1 0.552524500796739 NA NA experiment 0.894950998406522 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57485049 chr20:57485046 nonsynonymous SNV 1.000 5 18 hm7G_associated_SNPs_1030 0 0 1 3 2 GNAS chr20:57485136 5'GT 57485136 Upstream 91bp 980 chr1 207495794 207495794 1 + C A THCA 207495787 + 207495767 207495807 41 AGCTTTGGAAGGCCGTACAAGTTTTCCCGAGGATACTGTAA AGCTTTGGAAGGCCGTACAAGTTTTCCAGAGGATACTGTAA < 41bp 1 0.690982802630647 NA NA experiment 0.618034394738705 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control CD55 ENSG00000196352 CDS Human protein_coding chr1:207495787 chr1:207495794 synonymous SNV . 0 28 hm7G_associated_SNPs_1031 0 0 1 1 1 CD55 chr1:207495727 3'AG 207495727 Downstream 68bp 981 chr10 7838095 7838095 1 + G A UCEC 7838091 + 7838071 7838111 41 CTTTTATCCTCAGGATTCAAGTTCGAAATATGGCAACTTTG CTTTTATCCTCAGGATTCAAGTTCAAAATATGGCAACTTTG < 41bp 1 0.687911832220856 NA NA experiment 0.624176335558289 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7838091 chr10:7838095 nonsynonymous SNV 1.000 2 25 hm7G_associated_SNPs_1035 0 0 1 0 2 ATP5C1 chr10:7838084 3'AG 7838084 Downstream 12bp 982 chr10 7838095 7838095 1 + G A UCEC 7838091 + 7838071 7838111 41 CTTTTATCCTCAGGATTCAAGTTCGAAATATGGCAACTTTG CTTTTATCCTCAGGATTCAAGTTCAAAATATGGCAACTTTG < 41bp 1 0.687911832220856 NA NA experiment 0.624176335558289 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7838091 chr10:7838095 nonsynonymous SNV 1.000 2 25 hm7G_associated_SNPs_1035 0 0 1 0 2 ATP5C1 chr10:7838118 5'GT 7838118 Upstream 24bp 983 chr17 33925291 33925291 1 + A C UCEC 33925305 + 33925285 33925325 41 AAAAGAAAGAAAAGAGAAAGGAGGCTGTGAAGAAAGTGATT AAAAGACAGAAAAGAGAAAGGAGGCTGTGAAGAAAGTGATT < 41bp 1 0.726508017246544 NA NA experiment 0.546983965506912 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33925305 chr17:33925291 nonsynonymous SNV 1.000 1 7 hm7G_associated_SNPs_1036 0 0 1 0 2 AP2B1 chr17:33925249 3'AG 33925249 Downstream 43bp 984 chr17 33925291 33925291 1 + A C UCEC 33925305 + 33925285 33925325 41 AAAAGAAAGAAAAGAGAAAGGAGGCTGTGAAGAAAGTGATT AAAAGACAGAAAAGAGAAAGGAGGCTGTGAAGAAAGTGATT < 41bp 1 0.726508017246544 NA NA experiment 0.546983965506912 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33925305 chr17:33925291 nonsynonymous SNV 1.000 1 7 hm7G_associated_SNPs_1036 0 0 1 0 2 AP2B1 chr17:33925354 5'GT 33925354 Upstream 64bp 985 chr1 46080977 46080977 1 + C T UCEC 46080979 + 46080959 46080999 41 TCACTTTATTCTTTTTAGCTGTACTAAACGAGCAGGTGAAG TCACTTTATTCTTTTTAGTTGTACTAAACGAGCAGGTGAAG < 41bp 1 0.653694337257752 NA NA experiment 0.692611325484495 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46080979 chr1:46080977 nonsynonymous SNV 0.092 0 19 hm7G_associated_SNPs_1039 0 0 1 0 1 NASP chr1:46080977 3'AG 46080977 Downstream 1bp 986 chr12 110784092 110784092 1 + G A UCEC 110784098 + 110784078 110784118 41 CTCATGGATGAGACGCTCAAGTTTGTGGCCCGCAACTACCT CTCATGGATGAGACACTCAAGTTTGTGGCCCGCAACTACCT < 41bp 1 0.560761268279941 NA NA experiment 0.878477463440118 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110784098 chr12:110784092 synonymous SNV . 0 15 hm7G_associated_SNPs_1041 0 0 1 0 1 ATP2A2 chr12:110784126 5'GT 110784126 Upstream 35bp 987 chr11 18418394 18418394 1 + C G UCEC 18418383 + 18418363 18418403 41 TAGATTCCTTTTGGTTCCAAGTCCAATATGGCAACTCTAAA TAGATTCCTTTTGGTTCCAAGTCCAATATGGGAACTCTAAA < 41bp 1 0.647236935889178 NA NA experiment 0.705526128221644 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment LDHA ENSG00000134333 CDS Human protein_coding chr11:18418383 chr11:18418394 nonsynonymous SNV 0.936 1 32 hm7G_associated_SNPs_1042 0 0 1 0 1 LDHA chr11:18418366 3'AG 18418366 Downstream 29bp 988 chr17 80443395 80443395 1 + A G UCEC 80443411 + 80443391 80443431 41 GGTCACCCTTGAGAAGAACGGAGAGGTGGTGTTACGCTTTG GGTCGCCCTTGAGAAGAACGGAGAGGTGGTGTTACGCTTTG < 41bp 1 0.312159570257968 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80443411 chr17:80443395 nonsynonymous SNV 0.997 1 5 hm7G_associated_SNPs_1043 0 0 1 0 1 NARF chr17:80443373 3'AG 80443373 Downstream 23bp 989 chr12 1346030 1346030 1 + G A UCEC 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGCGCGACAACGGGAGGACAATCTCA < 41bp 1 0.591576102471624 NA NA experiment 0.816847795056751 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346030 nonsynonymous SNV 0.380 1 24 hm7G_associated_SNPs_1044 0 0 1 0 2 ERC1 chr12:1345935 3'AG 1345935 Downstream 96bp 990 chr12 1346030 1346030 1 + G A UCEC 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGCGCGACAACGGGAGGACAATCTCA < 41bp 1 0.591576102471624 NA NA experiment 0.816847795056751 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346030 nonsynonymous SNV 0.380 1 24 hm7G_associated_SNPs_1044 0 0 1 0 2 ERC1 chr12:1346070 5'GT 1346070 Upstream 41bp 991 chr12 53859733 53859733 1 + A G UCEC 53859731 + 53859711 53859751 41 TGTAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAG TGTAGGCCTATACCATTCAAGGGCAGTATGCCATTCCACAG < 41bp 1 0.566496881900068 NA NA experiment 0.867006236199864 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53859731 chr12:53859733 synonymous SNV . 0 23 hm7G_associated_SNPs_1046 0 0 1 0 2 PCBP2 chr12:53859716 3'AG 53859716 Downstream 18bp 992 chr12 53859733 53859733 1 + A G UCEC 53859731 + 53859711 53859751 41 TGTAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAG TGTAGGCCTATACCATTCAAGGGCAGTATGCCATTCCACAG < 41bp 1 0.566496881900068 NA NA experiment 0.867006236199864 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PCBP2 ENSG00000197111 CDS Human protein_coding chr12:53859731 chr12:53859733 synonymous SNV . 0 23 hm7G_associated_SNPs_1046 0 0 1 0 2 PCBP2 chr12:53859757 5'GT 53859757 Upstream 25bp 993 chr1 32768231 32768231 1 + G A UCEC 32768251 + 32768231 32768271 41 GAAATTACTATTATGGACAAGGCCACCCAATGAAGCCTCAC AAAATTACTATTATGGACAAGGCCACCCAATGAAGCCTCAC < 41bp 1 0.754914877896381 NA NA experiment 0.490170244207238 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32768251 chr1:32768231 nonsynonymous SNV 1.000 4 1 hm7G_associated_SNPs_1047 0 0 1 0 1 HDAC1 chr1:32768222 3'AG 32768222 Downstream 10bp 994 chr10 46233465 46233465 1 + T A UCEC 46233452 + 46233432 46233472 41 GTGTATATGATGAAGAAGTGGAGGAGCCAGTACTCAAGGCT GTGTATATGATGAAGAAGTGGAGGAGCCAGTACACAAGGCT < 41bp 1 0.437908014292968 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control WASHC2C ENSG00000172661 CDS Human protein_coding chr10:46233452 chr10:46233465 nonsynonymous SNV 0.568 2 34 hm7G_associated_SNPs_1048 0 0 0 0 1 WASHC2C chr10:46233493 5'GT 46233493 Upstream 29bp 995 chr18 46146002 46146002 1 + G A UCEC 46146000 + 46145980 46146020 41 GCAGCCGCTCCCAGGAGATCGAGGAGCTGGAGCGCTTCATC GCAGCCGCTCCCAGGAGATCGAAGAGCTGGAGCGCTTCATC < 41bp 1 0.23673539313117 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46146000 chr18:46146002 synonymous SNV . 0 23 hm7G_associated_SNPs_1049 0 0 0 0 1 CTIF chr18:46145909 3'AG 46145909 Downstream 94bp 996 chr3 58156390 58156390 1 + C T UCEC 58156408 + 58156388 58156428 41 AACGTCACATACGTCGTCAAGGAGAGGGGCGATTATGTGCT AATGTCACATACGTCGTCAAGGAGAGGGGCGATTATGTGCT < 41bp 1 0.74204517914695 NA NA experiment 0.5159096417061 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FLNB ENSG00000136068 CDS Human protein_coding chr3:58156408 chr3:58156390 synonymous SNV . 0 3 hm7G_associated_SNPs_1050 0 0 0 0 1 FLNB chr3:58156302 3'AG 58156302 Downstream 89bp 997 chr7 149575821 149575821 1 + G T UCEC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAATAA < 41bp 1 0.724226519069747 NA NA experiment 0.551546961860507 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575821 nonsynonymous SNV 0.998 0 39 hm7G_associated_SNPs_1053 0 0 1 0 3 ATP6V0E2 chr7:149575767 3'AG 149575767 Downstream 55bp 998 chr7 149575821 149575821 1 + G T UCEC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAATAA < 41bp 1 0.724226519069747 NA NA experiment 0.551546961860507 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575821 nonsynonymous SNV 0.998 0 39 hm7G_associated_SNPs_1053 0 0 1 0 3 ATP6V0E2 chr7:149575835 5'GT 149575835 Upstream 15bp 999 chr7 149575821 149575821 1 + G T UCEC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAATAA < 41bp 1 0.724226519069747 NA NA experiment 0.551546961860507 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human antisense chr7:149575803 chr7:149575821 nonsynonymous SNV 0.998 0 39 hm7G_associated_SNPs_1053 0 0 1 0 3 ATP6V0E2 chr7:149575879 5'GT 149575879 Upstream 59bp 1000 chr12 6973276 6973276 1 + G A UCEC 6973265 + 6973245 6973285 41 TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCTC TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCAACCCCCCTC < 41bp 1 0.696402362343644 NA NA experiment 0.607195275312711 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment USP5 ENSG00000111667 CDS Human protein_coding chr12:6973265 chr12:6973276 nonsynonymous SNV 0.398 1 32 hm7G_associated_SNPs_1055 0 0 1 0 2 USP5 chr12:6973214 3'AG 6973214 Downstream 63bp 1001 chr12 6973276 6973276 1 + G A UCEC 6973265 + 6973245 6973285 41 TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCGACCCCCCTC TAGTGGGCCGGGCTCCACAAGCGCAGCAGCCAACCCCCCTC < 41bp 1 0.696402362343644 NA NA experiment 0.607195275312711 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment USP5 ENSG00000111667 CDS Human protein_coding chr12:6973265 chr12:6973276 nonsynonymous SNV 0.398 1 32 hm7G_associated_SNPs_1055 0 0 1 0 2 USP5 chr12:6973359 5'GT 6973359 Upstream 84bp 1002 chr17 27935918 27935918 1 + G T UCEC 27935923 + 27935903 27935943 41 CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTAGACA CTACAAAGTGTGGAATAGCGGCCAGAACCTGAGGGTAGACA < 41bp 1 0.633285171472334 NA NA experiment 0.733429657055332 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935923 chr17:27935918 nonsynonymous SNV 1.000 4 16 hm7G_associated_SNPs_1056 0 0 0 1 2 ANKRD13B chr17:27935869 3'AG 27935869 Downstream 50bp 1003 chr17 27935918 27935918 1 + G T UCEC 27935923 + 27935903 27935943 41 CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTAGACA CTACAAAGTGTGGAATAGCGGCCAGAACCTGAGGGTAGACA < 41bp 1 0.633285171472334 NA NA experiment 0.733429657055332 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935923 chr17:27935918 nonsynonymous SNV 1.000 4 16 hm7G_associated_SNPs_1056 0 0 0 1 2 ANKRD13B chr17:27936012 5'GT 27936012 Upstream 95bp 1004 chr7 127729662 127729662 1 + C T UCEC 127729666 + 127729646 127729686 41 CTGCAGTTTGCAGATTCCAAGGGCGATGTGGGGCTGGGCTT CTGCAGTTTGCAGATTTCAAGGGCGATGTGGGGCTGGGCTT < 41bp 1 0.573636177262029 NA NA experiment 0.852727645475943 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SND1 ENSG00000197157 CDS Human protein_coding chr7:127729666 chr7:127729662 nonsynonymous SNV 0.997 2 17 hm7G_associated_SNPs_1061 0 0 1 0 1 SND1 chr7:127729744 5'GT 127729744 Upstream 83bp 1005 chr20 62660775 62660775 1 + G T UCEC 62660785 + 62660765 62660805 41 AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAA AGGCCCCAGATGAGGACCAAGAGCGTGGATGCCCTGAAGAA < 41bp 1 0.757177422717729 NA NA experiment 0.485645154564543 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62660785 chr20:62660775 nonsynonymous SNV 1.000 4 11 hm7G_associated_SNPs_1062 0 0 1 0 2 PRPF6 chr20:62660730 3'AG 62660730 Downstream 46bp 1006 chr20 62660775 62660775 1 + G T UCEC 62660785 + 62660765 62660805 41 AGGCCCCAGAGGAGGACCAAGAGCGTGGATGCCCTGAAGAA AGGCCCCAGATGAGGACCAAGAGCGTGGATGCCCTGAAGAA < 41bp 1 0.757177422717729 NA NA experiment 0.485645154564543 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62660785 chr20:62660775 nonsynonymous SNV 1.000 4 11 hm7G_associated_SNPs_1062 0 0 1 0 2 PRPF6 chr20:62660844 5'GT 62660844 Upstream 70bp 1007 chr11 63756185 63756185 1 + G A UCEC 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCGGTCCTATACAAGGAATATGCTGAAGATGACAA < 41bp 1 0.773688661997379 NA NA experiment 0.452622676005243 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756185 nonsynonymous SNV . 0 24 hm7G_associated_SNPs_1063 0 0 1 0 3 OTUB1 chr11:63756099 3'AG 63756099 Downstream 87bp 1008 chr11 63756185 63756185 1 + G A UCEC 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCGGTCCTATACAAGGAATATGCTGAAGATGACAA < 41bp 1 0.773688661997379 NA NA experiment 0.452622676005243 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756185 nonsynonymous SNV . 0 24 hm7G_associated_SNPs_1063 0 0 1 0 3 OTUB1 chr11:63756126 3'AG 63756126 Downstream 60bp 1009 chr11 63756185 63756185 1 + G A UCEC 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCGGTCCTATACAAGGAATATGCTGAAGATGACAA < 41bp 1 0.773688661997379 NA NA experiment 0.452622676005243 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756185 nonsynonymous SNV . 0 24 hm7G_associated_SNPs_1063 0 0 1 0 3 OTUB1 chr11:63756224 5'GT 63756224 Upstream 40bp 1010 chr14 77935473 77935473 1 + C T UCEC 77935462 + 77935442 77935482 41 GACCTTCATCGACAAGAACGGAGAGACTGAGCTGTGCATGG GACCTTCATCGACAAGAACGGAGAGACTGAGTTGTGCATGG < 41bp 1 0.739511820393661 NA NA experiment 0.520976359212678 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77935462 chr14:77935473 synonymous SNV . 0 32 hm7G_associated_SNPs_1064 0 0 1 0 1 AHSA1 chr14:77935420 3'AG 77935420 Downstream 54bp 1011 chr12 123889486 123889486 1 + G A UCEC 123889475 + 123889455 123889495 41 AGGGGTGTGATTGCCACCAAGCAGTTCTCCCGGGGTGACTT AGGGGTGTGATTGCCACCAAGCAGTTCTCCCAGGGTGACTT < 41bp 1 0.799475312650863 NA NA experiment 0.401049374698274 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KMT5A ENSG00000183955 CDS Human protein_coding chr12:123889475 chr12:123889486 nonsynonymous SNV 0.996 3 32 hm7G_associated_SNPs_1066 0 0 1 0 1 KMT5A chr12:123889431 3'AG 123889431 Downstream 56bp 1012 chr17 7496101 7496101 1 - C T UCEC 7496116 - 7496096 7496136 41 TGGGGAACCCCCCCCAGCAAGTGCCAGGCGCCGCCGCTCCC TGGGGAACCCCCCCCAGCAAGTGCCAGGCGCCGCCACTCCC < 41bp 1 0.634861841621238 NA NA experiment 0.730276316757524 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FXR2 ENSG00000129245 CDS Human protein_coding chr17:7496116 chr17:7496101 nonsynonymous SNV 0.996 4 36 hm7G_associated_SNPs_1067 0 0 1 0 1 FXR2 chr17:7496012 5'GT 7496012 Upstream 90bp 1013 chr3 183894829 183894829 1 + C T UCEC 183894814 + 183894794 183894834 41 TTATTCATCTATAATCACAAGGGGGAGGTGCTCATCTCCCG TTATTCATCTATAATCACAAGGGGGAGGTGCTCATTTCCCG < 41bp 1 0.723053828112894 NA NA experiment 0.553892343774211 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183894814 chr3:183894829 synonymous SNV . 0 36 hm7G_associated_SNPs_1068 0 0 1 0 1 AP2M1 chr3:183894855 5'GT 183894855 Upstream 27bp 1014 chr1 151237347 151237347 1 + C T UCEC 151237343 + 151237323 151237363 41 CGACAAGGCAAGAATCACAAGATGCGCATCATTGCCTTTGT CGACAAGGCAAGAATCACAAGATGTGCATCATTGCCTTTGT < 41bp 1 0.68822304755483 NA NA experiment 0.623553904890339 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237343 chr1:151237347 nonsynonymous SNV 1.000 4 25 hm7G_associated_SNPs_1069 0 0 1 0 2 PSMD4 chr1:151237308 3'AG 151237308 Downstream 40bp 1015 chr1 151237347 151237347 1 + C T UCEC 151237343 + 151237323 151237363 41 CGACAAGGCAAGAATCACAAGATGCGCATCATTGCCTTTGT CGACAAGGCAAGAATCACAAGATGTGCATCATTGCCTTTGT < 41bp 1 0.68822304755483 NA NA experiment 0.623553904890339 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237343 chr1:151237347 nonsynonymous SNV 1.000 4 25 hm7G_associated_SNPs_1069 0 0 1 0 2 PSMD4 chr1:151237394 5'GT 151237394 Upstream 48bp 1016 chr17 27935930 27935930 1 + C T UCEC 27935923 + 27935903 27935943 41 CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTAGACA CTACAAAGTGTGGAAGAGCGGCCAGAATCTGAGGGTAGACA < 41bp 1 0.672139381926614 NA NA experiment 0.655721236146773 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935923 chr17:27935930 synonymous SNV . 0 28 hm7G_associated_SNPs_1070 0 0 0 0 2 ANKRD13B chr17:27935869 3'AG 27935869 Downstream 62bp 1017 chr17 27935930 27935930 1 + C T UCEC 27935923 + 27935903 27935943 41 CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTAGACA CTACAAAGTGTGGAAGAGCGGCCAGAATCTGAGGGTAGACA < 41bp 1 0.672139381926614 NA NA experiment 0.655721236146773 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935923 chr17:27935930 synonymous SNV . 0 28 hm7G_associated_SNPs_1070 0 0 0 0 2 ANKRD13B chr17:27936012 5'GT 27936012 Upstream 83bp 1018 chr15 45008530 45008530 1 + G A UCEC 45008526 + 45008506 45008546 41 TCTCCACTGTCTTTTTCATAGATCGAGACATGTAAGCAGCA TCTCCACTGTCTTTTTCATAGATCAAGACATGTAAGCAGCA < 41bp 1 0.611942026401096 NA NA experiment 0.776115947197808 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control B2M ENSG00000166710 CDS Human protein_coding chr15:45008526 chr15:45008530 nonsynonymous SNV 0.054 0 25 hm7G_associated_SNPs_1071 0 0 1 0 1 B2M chr15:45008527 3'AG 45008527 Downstream 4bp 1019 chr10 103897755 103897755 1 + C G UCEC 103897772 + 103897752 103897792 41 CCTCCCTTATCTCCCTCATTGAGGATTTTGGGAGCCTTGGA CCTGCCTTATCTCCCTCATTGAGGATTTTGGGAGCCTTGGA < 41bp 1 0.699646095842064 NA NA experiment 0.600707808315871 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103897772 chr10:103897755 nonsynonymous SNV 0.998 3 4 hm7G_associated_SNPs_1073 0 0 1 0 1 PPRC1 chr10:103897795 5'GT 103897795 Upstream 41bp 1020 chr22 41914500 41914500 1 + C A UCEC 41914513 + 41914493 41914533 41 AATCTAGCTGATGAATTCAAGGATCACTTGGTGCCTGACCC AATCTAGATGATGAATTCAAGGATCACTTGGTGCCTGACCC < 41bp 1 0.740563395649874 NA NA experiment 0.518873208700252 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ACO2 ENSG00000100412 CDS Human protein_coding chr22:41914513 chr22:41914500 nonsynonymous SNV 0.999 4 8 hm7G_associated_SNPs_1076 0 0 1 0 2 ACO2 chr22:41914485 3'AG 41914485 Downstream 16bp 1021 chr22 41914500 41914500 1 + C A UCEC 41914513 + 41914493 41914533 41 AATCTAGCTGATGAATTCAAGGATCACTTGGTGCCTGACCC AATCTAGATGATGAATTCAAGGATCACTTGGTGCCTGACCC < 41bp 1 0.740563395649874 NA NA experiment 0.518873208700252 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ACO2 ENSG00000100412 CDS Human protein_coding chr22:41914513 chr22:41914500 nonsynonymous SNV 0.999 4 8 hm7G_associated_SNPs_1076 0 0 1 0 2 ACO2 chr22:41914576 5'GT 41914576 Upstream 77bp 1022 chr17 36912144 36912144 1 + G A UCEC 36912151 + 36912131 36912171 41 CTCAGTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGA CTCAGTGCCCAGCACCTCAAGTTCCGGCTGAACCTGTATGA < 41bp 1 0.731933621642522 NA NA experiment 0.536132756714955 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMB3 ENSG00000108294 CDS Human other chr17:36912151 chr17:36912144 nonsynonymous SNV 0.995 0 14 hm7G_associated_SNPs_1077 0 0 1 0 2 PSMB3 chr17:36912136 3'AG 36912136 Downstream 9bp 1023 chr17 36912144 36912144 1 + G A UCEC 36912151 + 36912131 36912171 41 CTCAGTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGA CTCAGTGCCCAGCACCTCAAGTTCCGGCTGAACCTGTATGA < 41bp 1 0.731933621642522 NA NA experiment 0.536132756714955 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMB3 ENSG00000108294 CDS Human other chr17:36912151 chr17:36912144 nonsynonymous SNV 0.995 0 14 hm7G_associated_SNPs_1077 0 0 1 0 2 PSMB3 chr17:36912243 5'GT 36912243 Upstream 100bp 1024 chr12 1346026 1346026 1 + C T UCEC 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGCGTGACGACGGGAGGACAATCTCA < 41bp 1 0.768289065043667 NA NA experiment 0.463421869912666 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346026 stopgain 0.220 1 20 hm7G_associated_SNPs_1078 0 0 1 0 2 ERC1 chr12:1345935 3'AG 1345935 Downstream 92bp 1025 chr12 1346026 1346026 1 + C T UCEC 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGCGTGACGACGGGAGGACAATCTCA < 41bp 1 0.768289065043667 NA NA experiment 0.463421869912666 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346026 stopgain 0.220 1 20 hm7G_associated_SNPs_1078 0 0 1 0 2 ERC1 chr12:1346070 5'GT 1346070 Upstream 45bp 1026 chr7 143002040 143002040 1 + C T UCEC 143002056 + 143002036 143002076 41 AACGCACTTATCAAGGATCGGGAAGGTTATGCTCCTGGCAC AACGTACTTATCAAGGATCGGGAAGGTTATGCTCCTGGCAC < 41bp 1 0.64338972752226 NA NA experiment 0.71322054495548 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CASP2 ENSG00000106144 CDS Human protein_coding chr7:143002056 chr7:143002040 nonsynonymous SNV 0.993 0 5 hm7G_associated_SNPs_1079 0 0 1 4 1 CASP2 chr7:143002033 3'AG 143002033 Downstream 8bp 1027 chr19 39944012 39944012 1 + G A UCEC 39944009 + 39943989 39944029 41 CCTGTAGGTAGACGAAGAGCGGCGGAGTGCAGCGGGCAGTG CCTGTAGGTAGACGAAGAGCGGCAGAGTGCAGCGGGCAGTG < 41bp 1 0.686967056928338 NA NA experiment 0.626065886143324 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944009 chr19:39944012 nonsynonymous SNV 0.827 1 24 hm7G_associated_SNPs_1080 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 17bp 1028 chr19 39944012 39944012 1 + G A UCEC 39944010 + 39943990 39944030 41 CTGTAGGTAGACGAAGAGCGGCGGAGTGCAGCGGGCAGTGA CTGTAGGTAGACGAAGAGCGGCAGAGTGCAGCGGGCAGTGA < 41bp 1 0.728464637611349 NA NA experiment 0.543070724777302 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944010 chr19:39944012 nonsynonymous SNV 0.827 1 23 hm7G_associated_SNPs_1081 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 17bp 1029 chr21 45163632 45163632 1 + C T UCEC 45163621 + 45163601 45163641 41 AAAGGTTATACGAGGGACAAGTCGTTCCTGGCCATGGTGGT AAAGGTTATACGAGGGACAAGTCGTTCCTGGTCATGGTGGT < 41bp 1 0.296364321459318 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PDXK ENSG00000160209 CDS Human protein_coding chr21:45163621 chr21:45163632 nonsynonymous SNV 0.987 0 32 hm7G_associated_SNPs_1086 0 0 1 0 2 PDXK chr21:45163605 3'AG 45163605 Downstream 28bp 1030 chr21 45163632 45163632 1 + C T UCEC 45163621 + 45163601 45163641 41 AAAGGTTATACGAGGGACAAGTCGTTCCTGGCCATGGTGGT AAAGGTTATACGAGGGACAAGTCGTTCCTGGTCATGGTGGT < 41bp 1 0.296364321459318 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PDXK ENSG00000160209 CDS Human protein_coding chr21:45163621 chr21:45163632 nonsynonymous SNV 0.987 0 32 hm7G_associated_SNPs_1086 0 0 1 0 2 PDXK chr21:45163688 5'GT 45163688 Upstream 57bp 1031 chr19 4501270 4501270 1 + C T UCEC 4501264 + 4501244 4501284 41 GGGGAGAGCGCAGAGGACAAGGAGCACGAGGAGGGTCGGGA GGGGAGAGCGCAGAGGACAAGGAGCATGAGGAGGGTCGGGA < 41bp 1 0.787630057268094 NA NA experiment 0.424739885463813 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4501264 chr19:4501270 synonymous SNV . 0 27 hm7G_associated_SNPs_1087 0 0 1 0 2 HDGFL2 chr19:4501203 3'AG 4501203 Downstream 68bp 1032 chr19 4501270 4501270 1 + C T UCEC 4501264 + 4501244 4501284 41 GGGGAGAGCGCAGAGGACAAGGAGCACGAGGAGGGTCGGGA GGGGAGAGCGCAGAGGACAAGGAGCATGAGGAGGGTCGGGA < 41bp 1 0.787630057268094 NA NA experiment 0.424739885463813 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4501264 chr19:4501270 synonymous SNV . 0 27 hm7G_associated_SNPs_1087 0 0 1 0 2 HDGFL2 chr19:4501329 5'GT 4501329 Upstream 60bp 1033 chr2 220371038 220371038 1 + C T UCEC 220371039 + 220371019 220371059 41 CCGTGGGACGCTGGGCCCGCGTGGAGGGTACCCCCAGTGAC CCGTGGGACGCTGGGCCCGTGTGGAGGGTACCCCCAGTGAC < 41bp 1 0.781468305439277 NA NA experiment 0.437063389121446 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GMPPA ENSG00000144591 CDS Human protein_coding chr2:220371039 chr2:220371038 synonymous SNV . 0 20 hm7G_associated_SNPs_1088 0 0 0 0 1 GMPPA chr2:220370976 3'AG 220370976 Downstream 63bp 1034 chr16 56643241 56643241 1 + C T UCEC 56643248 + 56643228 56643268 41 TGCAAAGGGGCGTCGGACAAGTGCAGCTGCTGCGCCTGATG TGCAAAGGGGCGTTGGACAAGTGCAGCTGCTGCGCCTGATG < 41bp 1 0.670006317687134 NA NA experiment 0.659987364625733 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control MT2A ENSG00000125148 CDS Human protein_coding chr16:56643248 chr16:56643241 nonsynonymous SNV 0.521 0 14 hm7G_associated_SNPs_1089 0 0 1 0 1 MT2A chr16:56643175 3'AG 56643175 Downstream 67bp 1035 chr19 48254313 48254313 1 + G A UCEC 48254302 + 48254282 48254322 41 CCTCAACCCTTCTGCAACAAGGGCCAAGCCCGGGCCCCAGG CCTCAACCCTTCTGCAACAAGGGCCAAGCCCAGGCCCCAGG < 41bp 1 0.61667945367044 NA NA experiment 0.766641092659121 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254302 chr19:48254313 nonsynonymous SNV 0.000 1 32 hm7G_associated_SNPs_1090 0 0 1 0 1 NOP53 chr19:48254364 5'GT 48254364 Upstream 52bp 1036 chr19 48254313 48254313 1 + G A UCEC 48254309 + 48254289 48254329 41 CCTTCTGCAACAAGGGCCAAGCCCGGGCCCCAGGACACCGT CCTTCTGCAACAAGGGCCAAGCCCAGGCCCCAGGACACCGT < 41bp 1 0.689066044341003 NA NA experiment 0.621867911317994 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254309 chr19:48254313 nonsynonymous SNV 0.000 1 25 hm7G_associated_SNPs_1091 0 0 1 0 1 NOP53 chr19:48254364 5'GT 48254364 Upstream 52bp 1037 chr1 156104618 156104618 1 + G A UCEC 156104613 + 156104593 156104633 41 CAGGAGCTGCGTGAGACCAAGCGCCGTCATGAGACCCGACT CAGGAGCTGCGTGAGACCAAGCGCCATCATGAGACCCGACT < 41bp 1 0.685572349349874 NA NA experiment 0.628855301300252 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156104613 chr1:156104618 nonsynonymous SNV 0.853 5 26 hm7G_associated_SNPs_1092 0 0 1 0 1 LMNA chr1:156104596 3'AG 156104596 Downstream 23bp 1038 chr17 41346376 41346376 1 + C A UCEC 41346382 + 41346362 41346402 41 TATAGGAAACTTTTCTTCTGGCTAAAGAAGAAAGACAGCTT TATAGGAAACTTTTATTCTGGCTAAAGAAGAAAGACAGCTT < 41bp 1 0.687567873822393 NA NA experiment 0.624864252355214 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NBR1 ENSG00000188554 CDS Human protein_coding chr17:41346382 chr17:41346376 nonsynonymous SNV 1.000 0 15 hm7G_associated_SNPs_1094 0 0 1 0 1 NBR1 chr17:41346367 3'AG 41346367 Downstream 10bp 1039 chr19 7696385 7696385 1 + G T UCEC 7696365 + 7696345 7696385 41 TTCTCCACCCCTAGCTTCAAGAGATAGAGGAATTCAAAGAG TTCTCCACCCCTAGCTTCAAGAGATAGAGGAATTCAAAGAT < 41bp 1 0.786096318058799 NA NA experiment 0.427807363882401 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PET100 ENSG00000229833 CDS Human protein_coding chr19:7696365 chr19:7696385 nonsynonymous SNV 0.993 0 41 hm7G_associated_SNPs_1096 0 0 1 0 1 PET100 chr19:7696359 3'AG 7696359 Downstream 27bp 1040 chr11 43465046 43465046 1 + G A UCEC 43465039 + 43465019 43465059 41 GGCGGCGTCTAGACTTACAAGGAATACGGGTGCTGAAGAAA GGCGGCGTCTAGACTTACAAGGAATACAGGTGCTGAAGAAA < 41bp 1 0.546284495401443 NA NA experiment 0.907431009197113 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465039 chr11:43465046 nonsynonymous SNV 0.936 3 28 hm7G_associated_SNPs_1097 0 0 1 0 1 TTC17 chr11:43465134 5'GT 43465134 Upstream 89bp 1041 chr11 65826991 65826991 1 + G T UCEC 65827009 + 65826989 65827029 41 AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG AATAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG < 41bp 1 0.794729882152808 NA NA experiment 0.410540235694383 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827009 chr11:65826991 nonsynonymous SNV 1.000 0 3 hm7G_associated_SNPs_1098 0 0 1 0 2 SF3B2 chr11:65826986 3'AG 65826986 Downstream 6bp 1042 chr11 65826991 65826991 1 + G T UCEC 65827009 + 65826989 65827029 41 AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG AATAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG < 41bp 1 0.794729882152808 NA NA experiment 0.410540235694383 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827009 chr11:65826991 nonsynonymous SNV 1.000 0 3 hm7G_associated_SNPs_1098 0 0 1 0 2 SF3B2 chr11:65827066 5'GT 65827066 Upstream 76bp 1043 chr11 64974101 64974101 1 + C T UCEC 64974095 + 64974075 64974115 41 TCCACCTTCGAGCCCAACAAGGAGGGCGACTTCGTGCTGCG TCCACCTTCGAGCCCAACAAGGAGGGTGACTTCGTGCTGCG < 41bp 1 0.742164904500118 NA NA experiment 0.515670190999765 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64974095 chr11:64974101 synonymous SNV . 0 27 hm7G_associated_SNPs_1099 0 0 1 0 1 CAPN1 chr11:64974145 5'GT 64974145 Upstream 45bp 1044 chr22 45970448 45970448 1 + T C UCEC 45970430 + 45970410 45970450 41 GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACGATGT GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACGACGT < 41bp 1 0.394091590837259 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45970430 chr22:45970448 synonymous SNV . 0 39 hm7G_associated_SNPs_1100 0 0 0 0 2 FBLN1 chr22:45970391 3'AG 45970391 Downstream 58bp 1045 chr22 45970448 45970448 1 + T C UCEC 45970430 + 45970410 45970450 41 GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACGATGT GACACGGTCCGCTGCATCAAGTCCTGCCGCCCCAACGACGT < 41bp 1 0.394091590837259 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45970430 chr22:45970448 synonymous SNV . 0 39 hm7G_associated_SNPs_1100 0 0 0 0 2 FBLN1 chr22:45970533 5'GT 45970533 Upstream 86bp 1046 chrX 118604368 118604368 1 + G A UCEC 118604355 + 118604335 118604375 41 GGAATGCTTCCGGATCCCAAGAACACTCACATCGTCATCAG GGAATGCTTCCGGATCCCAAGAACACTCACATCATCATCAG < 41bp 1 0.793590660677364 NA NA experiment 0.412818678645273 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118604355 chrX:118604368 nonsynonymous SNV 0.537 0 34 hm7G_associated_SNPs_1101 0 0 1 0 1 SLC25A5 chrX:118604336 3'AG 118604336 Downstream 33bp 1047 chr2 3627755 3627755 1 + G A UCEC 3627769 + 3627749 3627789 41 CCAAGCGAAATTGTGGGCAAGAGAATCCGCGTCAAACTAGA CCAAGCAAAATTGTGGGCAAGAGAATCCGCGTCAAACTAGA < 41bp 1 0.752053162027431 NA NA experiment 0.495893675945137 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627769 chr2:3627755 nonsynonymous SNV 0.987 4 7 hm7G_associated_SNPs_1102 0 0 1 0 2 RPS7 chr2:3627700 3'AG 3627700 Downstream 56bp 1048 chr2 3627755 3627755 1 + G A UCEC 3627769 + 3627749 3627789 41 CCAAGCGAAATTGTGGGCAAGAGAATCCGCGTCAAACTAGA CCAAGCAAAATTGTGGGCAAGAGAATCCGCGTCAAACTAGA < 41bp 1 0.752053162027431 NA NA experiment 0.495893675945137 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627769 chr2:3627755 nonsynonymous SNV 0.987 4 7 hm7G_associated_SNPs_1102 0 0 1 0 2 RPS7 chr2:3627850 5'GT 3627850 Upstream 96bp 1049 chr17 27935940 27935940 1 + G T UCEC 27935923 + 27935903 27935943 41 CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTAGACA CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTATACA < 41bp 1 0.676406547277429 NA NA experiment 0.647186905445142 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935923 chr17:27935940 nonsynonymous SNV 1.000 5 38 hm7G_associated_SNPs_1103 0 0 0 1 2 ANKRD13B chr17:27935869 3'AG 27935869 Downstream 72bp 1050 chr17 27935940 27935940 1 + G T UCEC 27935923 + 27935903 27935943 41 CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTAGACA CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTATACA < 41bp 1 0.676406547277429 NA NA experiment 0.647186905445142 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935923 chr17:27935940 nonsynonymous SNV 1.000 5 38 hm7G_associated_SNPs_1103 0 0 0 1 2 ANKRD13B chr17:27936012 5'GT 27936012 Upstream 73bp 1051 chrX 153628886 153628886 1 + C T UCEC 153628875 + 153628855 153628895 41 CCAGGGTTCACATTGGCCAAGTTATCATGTCCATCCGCACC CCAGGGTTCACATTGGCCAAGTTATCATGTCTATCCGCACC < 41bp 1 0.721799470182453 NA NA experiment 0.556401059635093 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628875 chrX:153628886 synonymous SNV . 0 32 hm7G_associated_SNPs_1104 0 0 0 1 2 RPL10 chrX:153628805 3'AG 153628805 Downstream 82bp 1052 chrX 153628886 153628886 1 + C T UCEC 153628875 + 153628855 153628895 41 CCAGGGTTCACATTGGCCAAGTTATCATGTCCATCCGCACC CCAGGGTTCACATTGGCCAAGTTATCATGTCTATCCGCACC < 41bp 1 0.721799470182453 NA NA experiment 0.556401059635093 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628875 chrX:153628886 synonymous SNV . 0 32 hm7G_associated_SNPs_1104 0 0 0 1 2 RPL10 chrX:153628967 5'GT 153628967 Upstream 82bp 1053 chr15 78566581 78566581 1 + G A UCEC 78566562 + 78566542 78566582 41 TTGGTGGGAAGAAGGGATCGGTGGAGAAGTGCCCGCTGTGC TTGGTGGGAAGAAGGGATCGGTGGAGAAGTGCCCGCTGTAC < 41bp 1 0.683184675974624 NA NA experiment 0.633630648050752 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78566562 chr15:78566581 nonsynonymous SNV 0.989 4 40 hm7G_associated_SNPs_1105 0 0 0 0 1 DNAJA4 chr15:78566539 3'AG 78566539 Downstream 43bp 1054 chr16 2807889 2807889 1 + C A UCEC 2807898 + 2807878 2807918 41 CTCTTTTGATCCTCAGCGTCGTGCCCGAGAAGCTAAACAAC CTCTTTTGATCATCAGCGTCGTGCCCGAGAAGCTAAACAAC < 41bp 1 0.4783111806449 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2807898 chr16:2807889 nonsynonymous SNV 1.000 3 12 hm7G_associated_SNPs_1106 0 0 1 0 1 SRRM2 chr16:2807946 5'GT 2807946 Upstream 58bp 1055 chr19 55899352 55899352 1 + G A UCEC 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACCACCATCAACAAGAATGCTCACGCCACGCTCAG < 41bp 1 0.73132811062292 NA NA experiment 0.53734377875416 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899352 nonsynonymous SNV 0.525 3 29 hm7G_associated_SNPs_1107 0 0 1 0 2 RPL28 chr19:55899298 3'AG 55899298 Downstream 55bp 1056 chr19 55899352 55899352 1 + G A UCEC 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GTGCGGACCACCATCAACAAGAATGCTCACGCCACGCTCAG < 41bp 1 0.73132811062292 NA NA experiment 0.53734377875416 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899352 nonsynonymous SNV 0.525 3 29 hm7G_associated_SNPs_1107 0 0 1 0 2 RPL28 chr19:55899416 5'GT 55899416 Upstream 65bp 1057 chr17 33925289 33925289 1 + G A UCEC 33925305 + 33925285 33925325 41 AAAAGAAAGAAAAGAGAAAGGAGGCTGTGAAGAAAGTGATT AAAAAAAAGAAAAGAGAAAGGAGGCTGTGAAGAAAGTGATT < 41bp 1 0.733830088023832 NA NA experiment 0.532339823952335 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33925305 chr17:33925289 synonymous SNV . 0 5 hm7G_associated_SNPs_1108 0 0 1 0 2 AP2B1 chr17:33925249 3'AG 33925249 Downstream 41bp 1058 chr17 33925289 33925289 1 + G A UCEC 33925305 + 33925285 33925325 41 AAAAGAAAGAAAAGAGAAAGGAGGCTGTGAAGAAAGTGATT AAAAAAAAGAAAAGAGAAAGGAGGCTGTGAAGAAAGTGATT < 41bp 1 0.733830088023832 NA NA experiment 0.532339823952335 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33925305 chr17:33925289 synonymous SNV . 0 5 hm7G_associated_SNPs_1108 0 0 1 0 2 AP2B1 chr17:33925354 5'GT 33925354 Upstream 66bp 1059 chr1 40535914 40535914 1 + G A UCEC 40535902 + 40535882 40535922 41 CAGGTGGCTTACATATACAAGTGTGTCAACACGACATTGCA CAGGTGGCTTACATATACAAGTGTGTCAACACAACATTGCA < 41bp 1 0.46860566056031 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAP1 ENSG00000131236 CDS Human protein_coding chr1:40535902 chr1:40535914 synonymous SNV . 0 33 hm7G_associated_SNPs_1109 0 0 1 0 2 CAP1 chr1:40535831 3'AG 40535831 Downstream 84bp 1060 chr1 40535914 40535914 1 + G A UCEC 40535902 + 40535882 40535922 41 CAGGTGGCTTACATATACAAGTGTGTCAACACGACATTGCA CAGGTGGCTTACATATACAAGTGTGTCAACACAACATTGCA < 41bp 1 0.46860566056031 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAP1 ENSG00000131236 CDS Human protein_coding chr1:40535902 chr1:40535914 synonymous SNV . 0 33 hm7G_associated_SNPs_1109 0 0 1 0 2 CAP1 chr1:40535954 5'GT 40535954 Upstream 41bp 1061 chr19 49518862 49518862 1 + G A UCEC 49518858 + 49518838 49518878 41 GTGCAGGTGGATGACATCAAGCGGGTCTACTCACTCTTCCT GTGCAGGTGGATGACATCAAGCGGATCTACTCACTCTTCCT < 41bp 1 0.640535073486087 NA NA experiment 0.718929853027826 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49518858 chr19:49518862 nonsynonymous SNV 0.988 1 25 hm7G_associated_SNPs_1110 0 0 1 1 1 RUVBL2 chr19:49518943 5'GT 49518943 Upstream 82bp 1062 chr7 74005275 74005275 1 + C T UCEC 74005287 + 74005267 74005307 41 AACACGTACGACATCCACCGGCTGGAGAAGATCCTGAAGGC AACACGTATGACATCCACCGGCTGGAGAAGATCCTGAAGGC < 41bp 1 0.580846650880163 NA NA experiment 0.838306698239675 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:74005287 chr7:74005275 synonymous SNV . 0 9 hm7G_associated_SNPs_1111 0 0 1 0 1 GTF2IRD1 chr7:74005346 5'GT 74005346 Upstream 72bp 1063 chr19 49518846 49518846 1 + G T UCEC 49518858 + 49518838 49518878 41 GTGCAGGTGGATGACATCAAGCGGGTCTACTCACTCTTCCT GTGCAGGTTGATGACATCAAGCGGGTCTACTCACTCTTCCT < 41bp 1 0.605369833016483 NA NA experiment 0.789260333967033 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49518858 chr19:49518846 nonsynonymous SNV 0.954 0 9 hm7G_associated_SNPs_1113 0 0 0 0 1 RUVBL2 chr19:49518943 5'GT 49518943 Upstream 98bp 1064 chr12 7080190 7080190 1 + G A UCEC 7080197 + 7080177 7080217 41 CGACTAGGGGCAGGAAACAAGATCGGAGGCCGTAGTTTATT CGACTAGGGGCAGAAAACAAGATCGGAGGCCGTAGTTTATT < 41bp 1 0.784082148613878 NA NA experiment 0.431835702772244 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment EMG1 ENSG00000126749 CDS Human protein_coding chr12:7080197 chr12:7080190 nonsynonymous SNV 0.974 0 14 hm7G_associated_SNPs_1114 0 0 1 0 1 EMG1 chr12:7080253 5'GT 7080253 Upstream 64bp 1065 chr6 29693261 29693261 1 + C T UCEC 29693262 + 29693242 29693282 41 CCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTT CCATCCCCATCGTGGGCATTGTTGCTGGCCTTGTTGTCCTT < 41bp 1 0.286230916917647 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HLA-F ENSG00000204642 CDS Human protein_coding chr6:29693262 chr6:29693261 synonymous SNV . 0 20 hm7G_associated_SNPs_1115 0 0 1 0 2 HLA-F chr6:29693224 3'AG 29693224 Downstream 38bp 1066 chr6 29693261 29693261 1 + C T UCEC 29693262 + 29693242 29693282 41 CCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTT CCATCCCCATCGTGGGCATTGTTGCTGGCCTTGTTGTCCTT < 41bp 1 0.286230916917647 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HLA-F ENSG00000204642 CDS Human protein_coding chr6:29693262 chr6:29693261 synonymous SNV . 0 20 hm7G_associated_SNPs_1115 0 0 1 0 2 HLA-F chr6:29693340 5'GT 29693340 Upstream 80bp 1067 chr16 31199677 31199677 1 + C T UCEC 31199660 + 31199640 31199680 41 CTAAAGGCCCTCGGGACCAAGGATCACGTCATGACTCCGGT CTAAAGGCCCTCGGGACCAAGGATCACGTCATGACTCTGGT < 41bp 1 0.729720728760619 NA NA experiment 0.540558542478762 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FUS ENSG00000089280 CDS Human protein_coding chr16:31199660 chr16:31199677 synonymous SNV . 0 38 hm7G_associated_SNPs_1116 0 0 1 0 1 FUS chr16:31199678 5'GT 31199678 Upstream 2bp 1068 chr6 31637658 31637658 1 + C T UCEC 31637662 + 31637642 31637682 41 CCTACCAGCTGCAGCTCCAAGCCGCCAGCAACTTCAAGAGC CCTACCAGCTGCAGCTTCAAGCCGCCAGCAACTTCAAGAGC < 41bp 1 0.322344974675441 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CSNK2B ENSG00000204435 CDS Human protein_coding chr6:31637662 chr6:31637658 synonymous SNV . 0 17 hm7G_associated_SNPs_1118 0 0 1 0 1 CSNK2B chr6:31637613 3'AG 31637613 Downstream 46bp 1069 chr21 34787198 34787198 1 + C A UCEC 34787194 + 34787174 34787214 41 TTTTTCTCTGTCCCCCTCAAGACCCTCTTTCCCAGCTGCCC TTTTTCTCTGTCCCCCTCAAGACCATCTTTCCCAGCTGCCC < 41bp 1 0.298451326394722 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment IFNGR2 ENSG00000159128 CDS Human protein_coding chr21:34787194 chr21:34787198 nonsynonymous SNV 0.218 1 25 hm7G_associated_SNPs_1119 0 0 1 0 1 IFNGR2 chr21:34787195 3'AG 34787195 Downstream 4bp 1070 chr1 151238834 151238834 1 + C T UCEC 151238825 + 151238805 151238845 41 AGATGACCATCAGCCAGCAAGAGTTTGGCCGCACTGGGCTT AGATGACCATCAGCCAGCAAGAGTTTGGCTGCACTGGGCTT < 41bp 1 0.786017959765474 NA NA experiment 0.427964080469052 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151238825 chr1:151238834 nonsynonymous SNV 0.981 1 30 hm7G_associated_SNPs_1120 0 0 1 0 2 PSMD4 chr1:151238784 3'AG 151238784 Downstream 51bp 1071 chr1 151238834 151238834 1 + C T UCEC 151238825 + 151238805 151238845 41 AGATGACCATCAGCCAGCAAGAGTTTGGCCGCACTGGGCTT AGATGACCATCAGCCAGCAAGAGTTTGGCTGCACTGGGCTT < 41bp 1 0.786017959765474 NA NA experiment 0.427964080469052 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151238825 chr1:151238834 nonsynonymous SNV 0.981 1 30 hm7G_associated_SNPs_1120 0 0 1 0 2 PSMD4 chr1:151238915 5'GT 151238915 Upstream 82bp 1072 chr16 57484976 57484976 1 + T C UCEC 57484969 + 57484949 57484989 41 CAGTGGCCCGTTGCCGACAAGCCCTGGTGCCGCGTGCCTTC CAGTGGCCCGTTGCCGACAAGCCCTGGCGCCGCGTGCCTTC < 41bp 1 0.727869572358179 NA NA experiment 0.544260855283643 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment COQ9 ENSG00000088682 CDS Human protein_coding chr16:57484969 chr16:57484976 nonsynonymous SNV 0.416 0 28 hm7G_associated_SNPs_1121 0 0 1 0 1 COQ9 chr16:57484952 3'AG 57484952 Downstream 25bp 1073 chr11 63965394 63965394 1 + A G UCEC 63965398 + 63965378 63965418 41 GCCATCCATTTCTATAACAAGTCTCTGGCAGAGCACCGAAC GCCATCCATTTCTATAGCAAGTCTCTGGCAGAGCACCGAAC < 41bp 1 0.796601820827291 NA NA experiment 0.406796358345419 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965398 chr11:63965394 nonsynonymous SNV 1.000 1 17 hm7G_associated_SNPs_1122 0 0 1 0 2 STIP1 chr11:63965326 3'AG 63965326 Downstream 69bp 1074 chr11 63965394 63965394 1 + A G UCEC 63965398 + 63965378 63965418 41 GCCATCCATTTCTATAACAAGTCTCTGGCAGAGCACCGAAC GCCATCCATTTCTATAGCAAGTCTCTGGCAGAGCACCGAAC < 41bp 1 0.796601820827291 NA NA experiment 0.406796358345419 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965398 chr11:63965394 nonsynonymous SNV 1.000 1 17 hm7G_associated_SNPs_1122 0 0 1 0 2 STIP1 chr11:63965446 5'GT 63965446 Upstream 53bp 1075 chr6 31637698 31637698 1 + C T UCEC 31637679 + 31637659 31637699 41 CAAGCCGCCAGCAACTTCAAGAGCCCAGTCAAGACGATTCG CAAGCCGCCAGCAACTTCAAGAGCCCAGTCAAGACGATTTG < 41bp 1 0.327977390037273 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CSNK2B ENSG00000204435 CDS Human protein_coding chr6:31637679 chr6:31637698 nonsynonymous SNV 0.999 3 40 hm7G_associated_SNPs_1123 0 0 1 0 1 CSNK2B chr6:31637613 3'AG 31637613 Downstream 86bp 1076 chr6 31637698 31637698 1 + C T UCEC 31637691 + 31637671 31637711 41 AACTTCAAGAGCCCAGTCAAGACGATTCGCTGATTCCCTCC AACTTCAAGAGCCCAGTCAAGACGATTTGCTGATTCCCTCC < 41bp 1 0.299923194191488 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CSNK2B ENSG00000204435 CDS Human protein_coding chr6:31637691 chr6:31637698 nonsynonymous SNV 0.999 3 28 hm7G_associated_SNPs_1124 0 0 1 0 1 CSNK2B chr6:31637613 3'AG 31637613 Downstream 86bp 1077 chr19 10793279 10793279 1 + G A UCEC 10793266 + 10793246 10793286 41 GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGA GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGACTGAGGA < 41bp 1 0.678537073693645 NA NA experiment 0.642925852612711 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793266 chr19:10793279 nonsynonymous SNV 0.011 0 34 hm7G_associated_SNPs_1125 0 0 1 0 1 ILF3 chr19:10793213 3'AG 10793213 Downstream 67bp 1078 chr15 89858578 89858578 1 + A G UCEC 89858560 + 89858540 89858580 41 AGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGA AGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTGGA < 41bp 1 0.760157924096808 NA NA experiment 0.479684151806383 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89858560 chr15:89858578 synonymous SNV . 0 39 hm7G_associated_SNPs_1126 0 0 1 0 2 FANCI chr15:89858513 3'AG 89858513 Downstream 66bp 1079 chr15 89858578 89858578 1 + A G UCEC 89858560 + 89858540 89858580 41 AGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGA AGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTGGA < 41bp 1 0.760157924096808 NA NA experiment 0.479684151806383 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control FANCI ENSG00000140525 CDS Human protein_coding chr15:89858560 chr15:89858578 synonymous SNV . 0 39 hm7G_associated_SNPs_1126 0 0 1 0 2 FANCI chr15:89858620 5'GT 89858620 Upstream 43bp 1080 chrX 153674022 153674022 1 + G A UCEC 153674010 + 153673990 153674030 41 ATGAAATCCAACATTGACAAGAAGTTCTCTGCGCACTACGA ATGAAATCCAACATTGACAAGAAGTTCTCTGCACACTACGA < 41bp 1 0.756746120648839 NA NA experiment 0.486507758702322 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FAM50A ENSG00000071859 CDS Human protein_coding chrX:153674010 chrX:153674022 synonymous SNV . 0 33 hm7G_associated_SNPs_1127 0 0 1 0 2 FAM50A chrX:153673981 3'AG 153673981 Downstream 42bp 1081 chrX 153674022 153674022 1 + G A UCEC 153674010 + 153673990 153674030 41 ATGAAATCCAACATTGACAAGAAGTTCTCTGCGCACTACGA ATGAAATCCAACATTGACAAGAAGTTCTCTGCACACTACGA < 41bp 1 0.756746120648839 NA NA experiment 0.486507758702322 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FAM50A ENSG00000071859 CDS Human protein_coding chrX:153674010 chrX:153674022 synonymous SNV . 0 33 hm7G_associated_SNPs_1127 0 0 1 0 2 FAM50A chrX:153674065 5'GT 153674065 Upstream 44bp 1082 chr19 55899325 55899325 1 + T C UCEC 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GCGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.76955228023879 NA NA experiment 0.46089543952242 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899325 nonsynonymous SNV 0.995 0 2 hm7G_associated_SNPs_1128 0 0 1 0 2 RPL28 chr19:55899298 3'AG 55899298 Downstream 28bp 1083 chr19 55899325 55899325 1 + T C UCEC 55899344 + 55899324 55899364 41 GTGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG GCGCGGACCACCATCAACAAGAATGCTCGCGCCACGCTCAG < 41bp 1 0.76955228023879 NA NA experiment 0.46089543952242 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899344 chr19:55899325 nonsynonymous SNV 0.995 0 2 hm7G_associated_SNPs_1128 0 0 1 0 2 RPL28 chr19:55899416 5'GT 55899416 Upstream 92bp 1084 chr22 42478007 42478007 1 + G A UCEC 42478000 + 42477980 42478020 41 GTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGA GTCGGGACACTCATTAGCAAGAACTTTACTGCTCTACTTGA < 41bp 1 0.62574234814052 NA NA experiment 0.74851530371896 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMDT1 ENSG00000183172 CDS Human protein_coding chr22:42478000 chr22:42478007 nonsynonymous SNV 0.999 4 28 hm7G_associated_SNPs_1129 0 0 1 0 2 SMDT1 chr22:42477929 3'AG 42477929 Downstream 79bp 1085 chr22 42478007 42478007 1 + G A UCEC 42478000 + 42477980 42478020 41 GTCGGGACACTCATTAGCAAGAACTTTGCTGCTCTACTTGA GTCGGGACACTCATTAGCAAGAACTTTACTGCTCTACTTGA < 41bp 1 0.62574234814052 NA NA experiment 0.74851530371896 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SMDT1 ENSG00000183172 CDS Human protein_coding chr22:42478000 chr22:42478007 nonsynonymous SNV 0.999 4 28 hm7G_associated_SNPs_1129 0 0 1 0 2 SMDT1 chr22:42478069 5'GT 42478069 Upstream 63bp 1086 chrX 153629127 153629127 1 + G T UCEC 153629144 + 153629124 153629164 41 CCAGATGGCTGTGGGGTCAAGTACATCCCCAATCGTGGCCC CCATATGGCTGTGGGGTCAAGTACATCCCCAATCGTGGCCC < 41bp 1 0.717065414377983 NA NA experiment 0.565869171244033 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL10 ENSG00000147403 CDS Human protein_coding chrX:153629144 chrX:153629127 nonsynonymous SNV 0.996 3 4 hm7G_associated_SNPs_1130 0 0 1 0 1 RPL10 chrX:153629043 3'AG 153629043 Downstream 85bp 1087 chr2 3627771 3627771 1 + G T UCEC 3627753 + 3627733 3627773 41 TGAGGACTTGGTCTTCCCAAGCGAAATTGTGGGCAAGAGAA TGAGGACTTGGTCTTCCCAAGCGAAATTGTGGGCAAGATAA < 41bp 1 0.788101522278619 NA NA experiment 0.423796955442762 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627753 chr2:3627771 nonsynonymous SNV 0.997 4 39 hm7G_associated_SNPs_1131 0 0 1 0 2 RPS7 chr2:3627700 3'AG 3627700 Downstream 72bp 1088 chr2 3627771 3627771 1 + G T UCEC 3627753 + 3627733 3627773 41 TGAGGACTTGGTCTTCCCAAGCGAAATTGTGGGCAAGAGAA TGAGGACTTGGTCTTCCCAAGCGAAATTGTGGGCAAGATAA < 41bp 1 0.788101522278619 NA NA experiment 0.423796955442762 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPS7 ENSG00000171863 CDS Human protein_coding chr2:3627753 chr2:3627771 nonsynonymous SNV 0.997 4 39 hm7G_associated_SNPs_1131 0 0 1 0 2 RPS7 chr2:3627850 5'GT 3627850 Upstream 80bp 1089 chr4 109546306 109546306 1 + G A UCEC 109546290 + 109546270 109546310 41 ATTTTCCTTTCTAGGATCAAGCGTGCTTTCCTTATCGAGGA ATTTTCCTTTCTAGGATCAAGCGTGCTTTCCTTATCAAGGA < 41bp 1 0.726205849362987 NA NA experiment 0.547588301274026 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL34 ENSG00000109475 CDS Human protein_coding chr4:109546290 chr4:109546306 nonsynonymous SNV 0.996 2 37 hm7G_associated_SNPs_1132 0 0 1 0 1 RPL34 chr4:109546284 3'AG 109546284 Downstream 23bp 1090 chr5 140081619 140081619 1 + G A UCEC 140081613 + 140081593 140081633 41 AAACCAGTGCAGCCTGTCAAGCGAGAGCTTTTACGGCATAG AAACCAGTGCAGCCTGTCAAGCGAGAACTTTTACGGCATAG < 41bp 1 0.782622314115838 NA NA experiment 0.434755371768323 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140081613 chr5:140081619 synonymous SNV . 0 27 hm7G_associated_SNPs_1133 0 0 1 0 1 ZMAT2 chr5:140081591 3'AG 140081591 Downstream 29bp 1091 chr22 31302254 31302254 1 + C A UCEC 31302266 + 31302246 31302286 41 GAGATGGCCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAA GAGATGGCATGTGTGTACAAGGGCGGCTACTGGGAGGCCAA < 41bp 1 0.714729109669958 NA NA experiment 0.570541780660083 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31302266 chr22:31302254 synonymous SNV . 0 9 hm7G_associated_SNPs_1136 0 0 1 0 2 OSBP2 chr22:31302181 3'AG 31302181 Downstream 74bp 1092 chr22 31302254 31302254 1 + C A UCEC 31302266 + 31302246 31302286 41 GAGATGGCCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAA GAGATGGCATGTGTGTACAAGGGCGGCTACTGGGAGGCCAA < 41bp 1 0.714729109669958 NA NA experiment 0.570541780660083 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control OSBP2 ENSG00000184792 CDS Human protein_coding chr22:31302266 chr22:31302254 synonymous SNV . 0 9 hm7G_associated_SNPs_1136 0 0 1 0 2 OSBP2 chr22:31302184 3'AG 31302184 Downstream 71bp 1093 chr12 98991655 98991655 1 + G A UCEC 98991654 + 98991634 98991674 41 GTGGACCCCCAAAAGTACAAGGGCATATTTAACGGATTCTC GTGGACCCCCAAAAGTACAAGAGCATATTTAACGGATTCTC < 41bp 1 0.482374698966853 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98991654 chr12:98991655 nonsynonymous SNV 0.999 0 22 hm7G_associated_SNPs_1138 0 0 1 0 1 SLC25A3 chr12:98991634 3'AG 98991634 Downstream 22bp 1094 chr17 72205356 72205356 1 + T C UCEC 72205339 + 72205319 72205359 41 CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGTGAA CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGCGAA < 41bp 1 0.781847159205139 NA NA experiment 0.436305681589722 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72205339 chr17:72205356 nonsynonymous SNV 1.000 2 38 hm7G_associated_SNPs_1139 0 0 1 0 2 RPL38 chr17:72205326 3'AG 72205326 Downstream 31bp 1095 chr17 72205356 72205356 1 + T C UCEC 72205339 + 72205319 72205359 41 CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGTGAA CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGCGAA < 41bp 1 0.781847159205139 NA NA experiment 0.436305681589722 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72205339 chr17:72205356 nonsynonymous SNV 1.000 2 38 hm7G_associated_SNPs_1139 0 0 1 0 2 RPL38 chr17:72205448 5'GT 72205448 Upstream 93bp 1096 chr19 14578561 14578561 1 + G T UCEC 14578569 + 14578549 14578589 41 CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCCG CTGACCCTCGAATATTTCAAGTTCCTGGCGGTGCTGGGCCG < 41bp 1 0.720725080044644 NA NA experiment 0.558549839910711 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578569 chr19:14578561 nonsynonymous SNV 0.978 3 13 hm7G_associated_SNPs_1140 0 0 1 0 2 PKN1 chr19:14578530 3'AG 14578530 Downstream 32bp 1097 chr19 14578561 14578561 1 + G T UCEC 14578569 + 14578549 14578589 41 CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCCG CTGACCCTCGAATATTTCAAGTTCCTGGCGGTGCTGGGCCG < 41bp 1 0.720725080044644 NA NA experiment 0.558549839910711 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578569 chr19:14578561 nonsynonymous SNV 0.978 3 13 hm7G_associated_SNPs_1140 0 0 1 0 2 PKN1 chr19:14578605 5'GT 14578605 Upstream 45bp 1098 chr19 10793256 10793256 1 + A G UCEC 10793266 + 10793246 10793286 41 GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGA GAAGGCAGGGGCTCGAGCAAGGGGGAGGACTCGGCTGAGGA < 41bp 1 0.742522976473019 NA NA experiment 0.514954047053963 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793266 chr19:10793256 nonsynonymous SNV 0.695 0 11 hm7G_associated_SNPs_1142 0 0 1 0 1 ILF3 chr19:10793213 3'AG 10793213 Downstream 44bp 1099 chr16 30095043 30095043 1 + G A UCEC 30095051 + 30095031 30095071 41 GGACAATCGACCGAAAGCAAGAGGTGCCTCATGATGGGCCC GGACAATCGACCAAAAGCAAGAGGTGCCTCATGATGGGCCC < 41bp 1 0.749158425751818 NA NA experiment 0.501683148496363 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095051 chr16:30095043 nonsynonymous SNV 0.999 3 13 hm7G_associated_SNPs_1143 0 0 1 0 2 PPP4C chr16:30094976 3'AG 30094976 Downstream 68bp 1100 chr16 30095043 30095043 1 + G A UCEC 30095051 + 30095031 30095071 41 GGACAATCGACCGAAAGCAAGAGGTGCCTCATGATGGGCCC GGACAATCGACCAAAAGCAAGAGGTGCCTCATGATGGGCCC < 41bp 1 0.749158425751818 NA NA experiment 0.501683148496363 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095051 chr16:30095043 nonsynonymous SNV 0.999 3 13 hm7G_associated_SNPs_1143 0 0 1 0 2 PPP4C chr16:30095102 5'GT 30095102 Upstream 60bp 1101 chr19 39944008 39944008 1 + C T UCEC 39944010 + 39943990 39944030 41 CTGTAGGTAGACGAAGAGCGGCGGAGTGCAGCGGGCAGTGA CTGTAGGTAGACGAAGAGTGGCGGAGTGCAGCGGGCAGTGA < 41bp 1 0.610917682555179 NA NA experiment 0.778164634889642 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39944010 chr19:39944008 nonsynonymous SNV 0.771 2 19 hm7G_associated_SNPs_1144 0 0 1 0 1 SUPT5H chr19:39943996 3'AG 39943996 Downstream 13bp 1102 chr3 58156391 58156391 1 + G A UCEC 58156408 + 58156388 58156428 41 AACGTCACATACGTCGTCAAGGAGAGGGGCGATTATGTGCT AACATCACATACGTCGTCAAGGAGAGGGGCGATTATGTGCT < 41bp 1 0.732006550756772 NA NA experiment 0.535986898486457 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment FLNB ENSG00000136068 CDS Human protein_coding chr3:58156408 chr3:58156391 nonsynonymous SNV 0.986 3 4 hm7G_associated_SNPs_1147 0 0 0 0 1 FLNB chr3:58156302 3'AG 58156302 Downstream 90bp 1103 chr22 42032574 42032574 1 + G A UCEC 42032582 + 42032562 42032602 41 AGGGACAAAAACGTTTCCAAGACATGATGGGCCACGGATCT AGGGACAAAAACATTTCCAAGACATGATGGGCCACGGATCT < 41bp 1 0.673164023070572 NA NA experiment 0.653671953858856 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42032582 chr22:42032574 nonsynonymous SNV 0.259 0 13 hm7G_associated_SNPs_1149 0 0 1 0 1 XRCC6 chr22:42032520 3'AG 42032520 Downstream 55bp 1104 chr2 217525367 217525367 1 + G A UCEC 217525383 + 217525363 217525403 41 GCTGGCCGGAAGCCCCTCAAGTCGGGTATGAAGGAGCTGGC GCTGACCGGAAGCCCCTCAAGTCGGGTATGAAGGAGCTGGC < 41bp 1 0.778057469717829 NA NA experiment 0.443885060564342 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment IGFBP2 ENSG00000115457 CDS Human protein_coding chr2:217525383 chr2:217525367 nonsynonymous SNV 0.730 1 5 hm7G_associated_SNPs_1150 0 0 1 0 1 IGFBP2 chr2:217525280 3'AG 217525280 Downstream 88bp 1105 chr17 900528 900528 1 + G A UCEC 900537 + 900517 900557 41 GAGCCTGGGCGGGATCCCAAGTCCAGCCAAGAGTGAGGAGC GAGCCTGGGCGAGATCCCAAGTCCAGCCAAGAGTGAGGAGC < 41bp 1 0.794664044822884 NA NA experiment 0.410671910354232 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment TIMM22 ENSG00000177370 CDS Human protein_coding chr17:900537 chr17:900528 nonsynonymous SNV 0.993 3 12 hm7G_associated_SNPs_1151 0 0 1 0 1 TIMM22 chr17:900620 5'GT 900620 Upstream 93bp 1106 chr12 12967065 12967065 1 + G T UCEC 12967064 + 12967044 12967084 41 TATATTTTTCTGAATTCCAAGGGTGTGACAGATGTGTTGTG TATATTTTTCTGAATTCCAAGTGTGTGACAGATGTGTTGTG < 41bp 1 0.356041882707747 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control DDX47 ENSG00000213782 CDS Human protein_coding chr12:12967064 chr12:12967065 nonsynonymous SNV 0.991 4 22 hm7G_associated_SNPs_1153 0 0 1 0 2 DDX47 chr12:12967065 5'GT 12967065 Upstream 1bp 1107 chr12 12967065 12967065 1 + G T UCEC 12967064 + 12967044 12967084 41 TATATTTTTCTGAATTCCAAGGGTGTGACAGATGTGTTGTG TATATTTTTCTGAATTCCAAGTGTGTGACAGATGTGTTGTG < 41bp 1 0.356041882707747 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control DDX47 ENSG00000213782 CDS Human protein_coding chr12:12967064 chr12:12967065 nonsynonymous SNV 0.991 4 22 hm7G_associated_SNPs_1153 0 0 1 0 2 DDX47 chr12:12967158 5'GT 12967158 Upstream 94bp 1108 chr3 39437923 39437923 1 + T C UCEC 39437905 + 39437885 39437925 41 ATAGGACTATGGACTACGTGGCTTCTTCCAAGGTGGCATCC ATAGGACTATGGACTACGTGGCTTCTTCCAAGGTGGCACCC < 41bp 1 0.624205577386176 NA NA experiment 0.751588845227649 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39437905 chr3:39437923 nonsynonymous SNV 0.472 2 39 hm7G_associated_SNPs_1154 0 0 1 0 1 SLC25A38 chr3:39437889 3'AG 39437889 Downstream 35bp 1109 chr1 46080992 46080992 1 + A G UCEC 46080979 + 46080959 46080999 41 TCACTTTATTCTTTTTAGCTGTACTAAACGAGCAGGTGAAG TCACTTTATTCTTTTTAGCTGTACTAAACGAGCGGGTGAAG < 41bp 1 0.736364489579059 NA NA experiment 0.527271020841882 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NASP ENSG00000132780 CDS Human protein_coding chr1:46080979 chr1:46080992 nonsynonymous SNV 0.881 0 34 hm7G_associated_SNPs_1155 0 0 1 0 1 NASP chr1:46080977 3'AG 46080977 Downstream 16bp 1110 chr2 27448062 27448062 1 + A G UCEC 27448067 + 27448047 27448087 41 CTGCCAGAATGGCAGAGATCGGAGAGCATGTGGCCCCGAGC CTGCCAGAATGGCAGGGATCGGAGAGCATGTGGCCCCGAGC < 41bp 1 0.680159865828585 NA NA experiment 0.639680268342831 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448067 chr2:27448062 nonsynonymous SNV 0.994 3 16 hm7G_associated_SNPs_1156 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 50bp 1111 chr2 27448062 27448062 1 + A G UCEC 27448068 + 27448048 27448088 41 TGCCAGAATGGCAGAGATCGGAGAGCATGTGGCCCCGAGCG TGCCAGAATGGCAGGGATCGGAGAGCATGTGGCCCCGAGCG < 41bp 1 0.513560152310383 NA NA experiment 0.972879695379234 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CAD ENSG00000084774 CDS Human protein_coding chr2:27448068 chr2:27448062 nonsynonymous SNV 0.994 3 15 hm7G_associated_SNPs_1157 0 0 1 0 1 CAD chr2:27448111 5'GT 27448111 Upstream 50bp 1112 chr19 3573726 3573726 1 + C T UCEC 3573744 + 3573724 3573764 41 GGCTTCGTGGTGACTGTCAAGCAAGAGCGCGGCGAGGGTCC GGTTTCGTGGTGACTGTCAAGCAAGAGCGCGGCGAGGGTCC < 41bp 1 0.730681981228106 NA NA experiment 0.538636037543789 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control HMG20B ENSG00000064961 CDS Human protein_coding chr19:3573744 chr19:3573726 synonymous SNV . 0 3 hm7G_associated_SNPs_1158 0 0 1 0 2 HMG20B chr19:3573690 3'AG 3573690 Downstream 37bp 1113 chr19 3573726 3573726 1 + C T UCEC 3573744 + 3573724 3573764 41 GGCTTCGTGGTGACTGTCAAGCAAGAGCGCGGCGAGGGTCC GGTTTCGTGGTGACTGTCAAGCAAGAGCGCGGCGAGGGTCC < 41bp 1 0.730681981228106 NA NA experiment 0.538636037543789 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control HMG20B ENSG00000064961 CDS Human protein_coding chr19:3573744 chr19:3573726 synonymous SNV . 0 3 hm7G_associated_SNPs_1158 0 0 1 0 2 HMG20B chr19:3573798 5'GT 3573798 Upstream 73bp 1114 chr7 134618079 134618079 1 + G T UCEC 134618072 + 134618052 134618092 41 AGGGATGCTGAAGAAAACAAGAAAGAAGACAAGGAAAAGGA AGGGATGCTGAAGAAAACAAGAAAGAATACAAGGAAAAGGA < 41bp 1 0.693459457907831 NA NA experiment 0.613081084184338 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control CALD1 ENSG00000122786 CDS Human protein_coding chr7:134618072 chr7:134618079 nonsynonymous SNV 0.521 1 28 hm7G_associated_SNPs_1159 0 0 1 0 1 CALD1 chr7:134618141 5'GT 134618141 Upstream 63bp 1115 chr17 27935931 27935931 1 + C A UCEC 27935923 + 27935903 27935943 41 CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTAGACA CTACAAAGTGTGGAAGAGCGGCCAGAACATGAGGGTAGACA < 41bp 1 0.719972565171474 NA NA experiment 0.560054869657052 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935923 chr17:27935931 nonsynonymous SNV 1.000 4 29 hm7G_associated_SNPs_1160 0 0 1 0 2 ANKRD13B chr17:27935869 3'AG 27935869 Downstream 63bp 1116 chr17 27935931 27935931 1 + C A UCEC 27935923 + 27935903 27935943 41 CTACAAAGTGTGGAAGAGCGGCCAGAACCTGAGGGTAGACA CTACAAAGTGTGGAAGAGCGGCCAGAACATGAGGGTAGACA < 41bp 1 0.719972565171474 NA NA experiment 0.560054869657052 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ANKRD13B ENSG00000198720 CDS Human protein_coding chr17:27935923 chr17:27935931 nonsynonymous SNV 1.000 4 29 hm7G_associated_SNPs_1160 0 0 1 0 2 ANKRD13B chr17:27936012 5'GT 27936012 Upstream 82bp 1117 chr2 73474927 73474927 1 + C T UCEC 73474922 + 73474902 73474942 41 GTAGCTGGTGTTGCATTCAAGAAGACTTTCTCTTACGCTGG GTAGCTGGTGTTGCATTCAAGAAGATTTTCTCTTACGCTGG < 41bp 1 0.586107245543635 NA NA experiment 0.827785508912731 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CCT7 ENSG00000135624 CDS Human protein_coding chr2:73474922 chr2:73474927 nonsynonymous SNV 1.000 4 26 hm7G_associated_SNPs_1161 0 0 1 0 1 CCT7 chr2:73474890 3'AG 73474890 Downstream 38bp 1118 chr19 59060243 59060243 1 + T A UCEC 59060247 + 59060227 59060267 41 AGGAGATGATCCCTACTCAAGTGCAGAGCCCCATGTGTCAG AGGAGATGATCCCTACACAAGTGCAGAGCCCCATGTGTCAG < 41bp 1 0.553908486575479 NA NA experiment 0.892183026849042 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060247 chr19:59060243 nonsynonymous SNV 0.966 0 17 hm7G_associated_SNPs_1162 0 0 1 0 2 TRIM28 chr19:59060229 3'AG 59060229 Downstream 15bp 1119 chr19 59060243 59060243 1 + T A UCEC 59060247 + 59060227 59060267 41 AGGAGATGATCCCTACTCAAGTGCAGAGCCCCATGTGTCAG AGGAGATGATCCCTACACAAGTGCAGAGCCCCATGTGTCAG < 41bp 1 0.553908486575479 NA NA experiment 0.892183026849042 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060247 chr19:59060243 nonsynonymous SNV 0.966 0 17 hm7G_associated_SNPs_1162 0 0 1 0 2 TRIM28 chr19:59060277 5'GT 59060277 Upstream 35bp 1120 chr1 156028153 156028153 1 + G A UCEC 156028148 + 156028128 156028168 41 TGGAGGAGCCCCTCACCCAAGTGGCGGCATCTTAACGGCAT TGGAGGAGCCCCTCACCCAAGTGGCAGCATCTTAACGGCAT < 41bp 1 0.692103476527033 NA NA experiment 0.615793046945933 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156028148 chr1:156028153 nonsynonymous SNV 0.917 1 26 hm7G_associated_SNPs_1163 0 0 1 0 1 LAMTOR2 chr1:156028106 3'AG 156028106 Downstream 48bp 1121 chr1 201843466 201843466 1 + C A UCEC 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCAGCT < 41bp 1 0.42754370831189 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843466 synonymous SNV . 0 38 hm7G_associated_SNPs_1164 0 0 1 0 2 IPO9 chr1:201843378 3'AG 201843378 Downstream 89bp 1122 chr1 201843466 201843466 1 + C A UCEC 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCAGCT < 41bp 1 0.42754370831189 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843466 synonymous SNV . 0 38 hm7G_associated_SNPs_1164 0 0 1 0 2 IPO9 chr1:201843500 5'GT 201843500 Upstream 35bp 1123 chrX 114863533 114863533 1 + T C UCEC 114863519 + 114863499 114863539 41 TTAATTAATAGATTTTTCAAGAGGTAAAAAGTAGTGATATT TTAATTAATAGATTTTTCAAGAGGTAAAAAGTAGCGATATT < 41bp 1 0.559403815766506 NA NA experiment 0.881192368466988 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PLS3 ENSG00000102024 CDS Human protein_coding chrX:114863519 chrX:114863533 synonymous SNV . 0 35 hm7G_associated_SNPs_1166 0 0 1 1 1 PLS3 chrX:114863510 3'AG 114863510 Downstream 24bp 1124 chr19 52705200 52705200 1 + C T UCEC 52705217 + 52705197 52705237 41 CTTCGCCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT CTTTGCCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT < 41bp 1 0.721332416806458 NA NA experiment 0.557335166387083 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705217 chr19:52705200 nonsynonymous SNV 0.996 3 4 hm7G_associated_SNPs_1167 0 0 1 0 2 PPP2R1A chr19:52705197 3'AG 52705197 Downstream 4bp 1125 chr19 52705200 52705200 1 + C T UCEC 52705217 + 52705197 52705237 41 CTTCGCCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT CTTTGCCTCAACAGCATCAAGAAGCTGTCCACCATCGCCTT < 41bp 1 0.721332416806458 NA NA experiment 0.557335166387083 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52705217 chr19:52705200 nonsynonymous SNV 0.996 3 4 hm7G_associated_SNPs_1167 0 0 1 0 2 PPP2R1A chr19:52705287 5'GT 52705287 Upstream 88bp 1126 chr1 155279872 155279872 1 + A T UCEC 155279892 + 155279872 155279912 41 ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAG TTTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAG < 41bp 1 0.740504471078141 NA NA experiment 0.518991057843718 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FDPS ENSG00000160752 CDS Human protein_coding chr1:155279892 chr1:155279872 nonsynonymous SNV 0.990 1 1 hm7G_associated_SNPs_1169 0 0 1 0 2 FDPS chr1:155279834 3'AG 155279834 Downstream 39bp 1127 chr1 155279872 155279872 1 + A T UCEC 155279892 + 155279872 155279912 41 ATTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAG TTTCAGATGTTTATGCCCAAGAAAAGCAGGATTTCGTTCAG < 41bp 1 0.740504471078141 NA NA experiment 0.518991057843718 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment FDPS ENSG00000160752 CDS Human protein_coding chr1:155279892 chr1:155279872 nonsynonymous SNV 0.990 1 1 hm7G_associated_SNPs_1169 0 0 1 0 2 FDPS chr1:155279855 3'AG 155279855 Downstream 18bp 1128 chr12 112230517 112230517 1 + G C UCEC 112230535 + 112230515 112230555 41 CGGAGCGTTGCCCGGGCCAAGTCTCGGGTGGTCGGGAACCC CGCAGCGTTGCCCGGGCCAAGTCTCGGGTGGTCGGGAACCC < 41bp 1 0.789852821510993 NA NA experiment 0.420294356978014 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112230535 chr12:112230517 synonymous SNV . 0 3 hm7G_associated_SNPs_1170 0 0 1 0 1 ALDH2 chr12:112230586 5'GT 112230586 Upstream 70bp 1129 chr5 65473445 65473445 1 + G A UCEC 65473450 + 65473430 65473470 41 AGTTCTAATGATAGAGATGGGAAGGAGAAGTTGGAGAAGAA AGTTCTAATGATAGAAATGGGAAGGAGAAGTTGGAGAAGAA < 41bp 1 0.752316982179125 NA NA experiment 0.49536603564175 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SREK1 ENSG00000153914 CDS Human protein_coding chr5:65473450 chr5:65473445 nonsynonymous SNV 0.998 1 16 hm7G_associated_SNPs_1171 0 0 1 0 1 SREK1 chr5:65473486 5'GT 65473486 Upstream 42bp 1130 chr2 73474911 73474911 1 + G A UCEC 73474922 + 73474902 73474942 41 GTAGCTGGTGTTGCATTCAAGAAGACTTTCTCTTACGCTGG GTAGCTGGTATTGCATTCAAGAAGACTTTCTCTTACGCTGG < 41bp 1 0.637844858218528 NA NA experiment 0.724310283562943 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CCT7 ENSG00000135624 CDS Human protein_coding chr2:73474922 chr2:73474911 nonsynonymous SNV 0.996 3 10 hm7G_associated_SNPs_1172 0 0 1 0 1 CCT7 chr2:73474890 3'AG 73474890 Downstream 22bp 1131 chr2 204267369 204267369 1 + G A UCEC 204267380 + 204267360 204267400 41 AGGGGGCTCGTTGCCCTATAGACGCCCTCCTTCCATTACTT AGGGGGCTCATTGCCCTATAGACGCCCTCCTTCCATTACTT < 41bp 1 0.2816374049509 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204267380 chr2:204267369 synonymous SNV . 0 10 hm7G_associated_SNPs_1173 0 0 0 0 2 ABI2 chr2:204267299 3'AG 204267299 Downstream 71bp 1132 chr2 204267369 204267369 1 + G A UCEC 204267380 + 204267360 204267400 41 AGGGGGCTCGTTGCCCTATAGACGCCCTCCTTCCATTACTT AGGGGGCTCATTGCCCTATAGACGCCCTCCTTCCATTACTT < 41bp 1 0.2816374049509 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ABI2 ENSG00000138443 CDS Human protein_coding chr2:204267380 chr2:204267369 synonymous SNV . 0 10 hm7G_associated_SNPs_1173 0 0 0 0 2 ABI2 chr2:204267457 5'GT 204267457 Upstream 89bp 1133 chr1 32497169 32497169 1 + C G UCEC 32497158 + 32497138 32497178 41 GGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTG GGAAGATTCTTGGACCACAAGGGAATACAATGAAAAGACTG < 41bp 1 0.745036934441229 NA NA experiment 0.509926131117542 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32497158 chr1:32497169 nonsynonymous SNV 1.000 1 32 hm7G_associated_SNPs_1174 0 0 1 0 2 KHDRBS1 chr1:32497125 3'AG 32497125 Downstream 45bp 1134 chr1 32497169 32497169 1 + C G UCEC 32497158 + 32497138 32497178 41 GGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTG GGAAGATTCTTGGACCACAAGGGAATACAATGAAAAGACTG < 41bp 1 0.745036934441229 NA NA experiment 0.509926131117542 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32497158 chr1:32497169 nonsynonymous SNV 1.000 1 32 hm7G_associated_SNPs_1174 0 0 1 0 2 KHDRBS1 chr1:32497241 5'GT 32497241 Upstream 73bp 1135 chr11 118518698 118518698 1 + G A UCEC 118518690 + 118518670 118518710 41 CAGGCCCTGGAGGAGGAGCGGCGGAGGCGTGAGCAGGTAGA CAGGCCCTGGAGGAGGAGCGGCGGAGGCATGAGCAGGTAGA < 41bp 1 0.696613345783304 NA NA experiment 0.606773308433393 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118518690 chr11:118518698 nonsynonymous SNV 0.980 4 29 hm7G_associated_SNPs_1175 0 0 1 0 2 PHLDB1 chr11:118518646 3'AG 118518646 Downstream 53bp 1136 chr11 118518698 118518698 1 + G A UCEC 118518690 + 118518670 118518710 41 CAGGCCCTGGAGGAGGAGCGGCGGAGGCGTGAGCAGGTAGA CAGGCCCTGGAGGAGGAGCGGCGGAGGCATGAGCAGGTAGA < 41bp 1 0.696613345783304 NA NA experiment 0.606773308433393 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118518690 chr11:118518698 nonsynonymous SNV 0.980 4 29 hm7G_associated_SNPs_1175 0 0 1 0 2 PHLDB1 chr11:118518792 5'GT 118518792 Upstream 95bp 1137 chr1 201843437 201843437 1 + G A UCEC 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACAAGCTCTCCAACGTCATGGAGGCTAATGCCGCT < 41bp 1 0.457821978885947 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843437 nonsynonymous SNV 0.999 4 9 hm7G_associated_SNPs_1176 0 0 1 0 2 IPO9 chr1:201843378 3'AG 201843378 Downstream 60bp 1138 chr1 201843437 201843437 1 + G A UCEC 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACAAGCTCTCCAACGTCATGGAGGCTAATGCCGCT < 41bp 1 0.457821978885947 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843437 nonsynonymous SNV 0.999 4 9 hm7G_associated_SNPs_1176 0 0 1 0 2 IPO9 chr1:201843500 5'GT 201843500 Upstream 64bp 1139 chr12 112230521 112230521 1 + G A UCEC 112230535 + 112230515 112230555 41 CGGAGCGTTGCCCGGGCCAAGTCTCGGGTGGTCGGGAACCC CGGAGCATTGCCCGGGCCAAGTCTCGGGTGGTCGGGAACCC < 41bp 1 0.78951311509089 NA NA experiment 0.420973769818221 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112230535 chr12:112230521 nonsynonymous SNV 0.524 0 7 hm7G_associated_SNPs_1177 0 0 1 0 1 ALDH2 chr12:112230586 5'GT 112230586 Upstream 66bp 1140 chr10 75530113 75530113 1 + A G UCEC 75530096 + 75530076 75530116 41 AGTTCGAGCCTCTGAAGAGCGTCTAAGCAATGGGGATATAT AGTTCGAGCCTCTGAAGAGCGTCTAAGCAATGGGGATGTAT < 41bp 1 0.67393819606027 NA NA experiment 0.652123607879459 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SEC24C ENSG00000176986 CDS Human protein_coding chr10:75530096 chr10:75530113 nonsynonymous SNV 0.995 0 38 hm7G_associated_SNPs_1178 0 0 1 0 1 SEC24C chr10:75530038 3'AG 75530038 Downstream 76bp 1141 chr7 150767102 150767102 1 + G A UCEC 150767122 + 150767102 150767142 41 GTCATCTCTGACCAGATCAAGGCCGAGGACAGGGCCAACGT ATCATCTCTGACCAGATCAAGGCCGAGGACAGGGCCAACGT < 41bp 1 0.787896036061846 NA NA experiment 0.424207927876307 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150767122 chr7:150767102 nonsynonymous SNV 1.000 1 1 hm7G_associated_SNPs_1179 0 0 1 0 2 SLC4A2 chr7:150767034 3'AG 150767034 Downstream 69bp 1142 chr7 150767102 150767102 1 + G A UCEC 150767122 + 150767102 150767142 41 GTCATCTCTGACCAGATCAAGGCCGAGGACAGGGCCAACGT ATCATCTCTGACCAGATCAAGGCCGAGGACAGGGCCAACGT < 41bp 1 0.787896036061846 NA NA experiment 0.424207927876307 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150767122 chr7:150767102 nonsynonymous SNV 1.000 1 1 hm7G_associated_SNPs_1179 0 0 1 0 2 SLC4A2 chr7:150767169 5'GT 150767169 Upstream 68bp 1143 chr1 153617620 153617620 1 + C T UCEC 153617637 + 153617617 153617657 41 GCTCGCCCTGTATTGACCAAGGAGCAGCTGGACAACCAATT GCTTGCCCTGTATTGACCAAGGAGCAGCTGGACAACCAATT < 41bp 1 0.777059155713737 NA NA experiment 0.445881688572526 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617637 chr1:153617620 nonsynonymous SNV 0.995 3 4 hm7G_associated_SNPs_1180 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 81bp 1144 chr3 23960844 23960844 1 + A G UCEC 23960840 + 23960820 23960860 41 CCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAGATG CCCAGTGGATCACCAAACCAGTCCGCAAGCACAGGGAGATG < 41bp 1 0.674369383611535 NA NA experiment 0.651261232776929 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RPL15 ENSG00000174748 CDS Human protein_coding chr3:23960840 chr3:23960844 nonsynonymous SNV 1.000 1 25 hm7G_associated_SNPs_1181 0 0 1 0 1 RPL15 chr3:23960841 3'AG 23960841 Downstream 4bp 1145 chr1 32794674 32794674 1 + C T UCEC 32794692 + 32794672 32794712 41 ATCGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCC ATTGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCC < 41bp 1 0.521472872997807 NA NA experiment 0.957054254004386 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32794692 chr1:32794674 synonymous SNV . 0 3 hm7G_associated_SNPs_1183 0 0 1 0 2 HDAC1 chr1:32794669 3'AG 32794669 Downstream 6bp 1146 chr1 32794674 32794674 1 + C T UCEC 32794692 + 32794672 32794712 41 ATCGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCC ATTGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCC < 41bp 1 0.521472872997807 NA NA experiment 0.957054254004386 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment HDAC1 ENSG00000116478 CDS Human protein_coding chr1:32794692 chr1:32794674 synonymous SNV . 0 3 hm7G_associated_SNPs_1183 0 0 1 0 2 HDAC1 chr1:32794761 5'GT 32794761 Upstream 88bp 1147 chr6 33243614 33243614 1 + C T UCEC 33243633 + 33243613 33243653 41 GCAGACATTGACCTCACCAAGAGGGCGGGAGAACTCACTGA GTAGACATTGACCTCACCAAGAGGGCGGGAGAACTCACTGA < 41bp 1 0.779544656264264 NA NA experiment 0.440910687471472 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243633 chr6:33243614 nonsynonymous SNV 1.000 2 2 hm7G_associated_SNPs_1184 0 0 1 1 1 RPS18 chr6:33243660 5'GT 33243660 Upstream 47bp 1148 chr11 18422425 18422425 1 + G A UCEC 18422409 + 18422389 18422429 41 AATGTAACTGCAAACTCCAAGCTGGTCATTATCACGGCTGG AATGTAACTGCAAACTCCAAGCTGGTCATTATCACGACTGG < 41bp 1 0.712734347778226 NA NA experiment 0.574531304443547 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment LDHA ENSG00000134333 CDS Human protein_coding chr11:18422409 chr11:18422425 nonsynonymous SNV 0.676 4 37 hm7G_associated_SNPs_1185 0 0 1 0 1 LDHA chr11:18422384 3'AG 18422384 Downstream 42bp 1149 chr20 57480446 57480446 1 + T C UCEC 57480458 + 57480438 57480478 41 GAATTCTATGAGCATGCCAAGGCTCTGTGGGAGGATGAAGG GAATTCTACGAGCATGCCAAGGCTCTGTGGGAGGATGAAGG < 41bp 1 0.757424092221328 NA NA experiment 0.485151815557344 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57480458 chr20:57480446 synonymous SNV . 0 9 hm7G_associated_SNPs_1186 0 0 1 2 2 GNAS chr20:57480438 3'AG 57480438 Downstream 9bp 1150 chr20 57480446 57480446 1 + T C UCEC 57480458 + 57480438 57480478 41 GAATTCTATGAGCATGCCAAGGCTCTGTGGGAGGATGAAGG GAATTCTACGAGCATGCCAAGGCTCTGTGGGAGGATGAAGG < 41bp 1 0.757424092221328 NA NA experiment 0.485151815557344 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57480458 chr20:57480446 synonymous SNV . 0 9 hm7G_associated_SNPs_1186 0 0 1 2 2 GNAS chr20:57480535 5'GT 57480535 Upstream 90bp 1151 chr1 153617622 153617622 1 + C T UCEC 153617637 + 153617617 153617657 41 GCTCGCCCTGTATTGACCAAGGAGCAGCTGGACAACCAATT GCTCGTCCTGTATTGACCAAGGAGCAGCTGGACAACCAATT < 41bp 1 0.785658969433799 NA NA experiment 0.428682061132402 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CHTOP ENSG00000160679 CDS Human protein_coding chr1:153617637 chr1:153617622 synonymous SNV . 0 6 hm7G_associated_SNPs_1187 0 0 1 0 1 CHTOP chr1:153617540 3'AG 153617540 Downstream 83bp 1152 chr9 131388868 131388868 1 + C T UCEC 131388873 + 131388853 131388893 41 CTGGCCGAGCTGGACCGCCAGATCAAGAGCTTCCGCGTAGC CTGGCCGAGCTGGACTGCCAGATCAAGAGCTTCCGCGTAGC < 41bp 1 0.558115116056183 NA NA experiment 0.883769767887633 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131388873 chr9:131388868 nonsynonymous SNV 1.000 3 16 hm7G_associated_SNPs_1189 1 0 1 0 1 SPTAN1 chr9:131388966 5'GT 131388966 Upstream 99bp 1153 chr19 17531144 17531144 1 + C A UCEC 17531163 + 17531143 17531183 41 GCACCCGCCAGCTTTGGCAAGAGCTTCGCGCAGAAATCTGG GAACCCGCCAGCTTTGGCAAGAGCTTCGCGCAGAAATCTGG < 41bp 1 0.665266008219728 NA NA experiment 0.669467983560543 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment MVB12A ENSG00000141971 CDS Human protein_coding chr19:17531163 chr19:17531144 nonsynonymous SNV 0.500 0 2 hm7G_associated_SNPs_1190 0 0 1 0 2 MVB12A chr19:17531122 3'AG 17531122 Downstream 23bp 1154 chr19 17531144 17531144 1 + C A UCEC 17531163 + 17531143 17531183 41 GCACCCGCCAGCTTTGGCAAGAGCTTCGCGCAGAAATCTGG GAACCCGCCAGCTTTGGCAAGAGCTTCGCGCAGAAATCTGG < 41bp 1 0.665266008219728 NA NA experiment 0.669467983560543 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment MVB12A ENSG00000141971 CDS Human protein_coding chr19:17531163 chr19:17531144 nonsynonymous SNV 0.500 0 2 hm7G_associated_SNPs_1190 0 0 1 0 2 MVB12A chr19:17531220 5'GT 17531220 Upstream 77bp 1155 chr19 50338285 50338285 1 + C T UCEC 50338272 + 50338252 50338292 41 GTGCACTTCCCCCACACGGCGCCCTGTGAGGTGCGCGTGCT GTGCACTTCCCCCACACGGCGCCCTGTGAGGTGTGCGTGCT < 41bp 1 0.673648249537121 NA NA experiment 0.652703500925757 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MED25 ENSG00000104973 CDS Human protein_coding chr19:50338272 chr19:50338285 nonsynonymous SNV 0.898 5 34 hm7G_associated_SNPs_1191 0 0 0 0 1 MED25 chr19:50338243 3'AG 50338243 Downstream 43bp 1156 chr19 56206560 56206560 1 + G T UCEC 56206572 + 56206552 56206592 41 CAGCCCGCGCCTCCCGCGACGCTCACCCTGAACCAGCTCCG CAGCCCGCTCCTCCCGCGACGCTCACCCTGAACCAGCTCCG < 41bp 1 0.549011960432725 NA NA experiment 0.901976079134549 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control EPN1 ENSG00000063245 CDS Human protein_coding chr19:56206572 chr19:56206560 synonymous SNV . 0 9 hm7G_associated_SNPs_1195 0 0 1 0 1 EPN1 chr19:56206514 3'AG 56206514 Downstream 47bp 1157 chr10 17277219 17277219 1 + G A UCEC 17277237 + 17277217 17277257 41 TTGAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAG TTAAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAG < 41bp 1 0.786436422689637 NA NA experiment 0.427127154620725 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment VIM ENSG00000026025 CDS Human protein_coding chr10:17277237 chr10:17277219 nonsynonymous SNV 0.982 4 3 hm7G_associated_SNPs_1196 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 52bp 1158 chr5 65473459 65473459 1 + G A UCEC 65473450 + 65473430 65473470 41 AGTTCTAATGATAGAGATGGGAAGGAGAAGTTGGAGAAGAA AGTTCTAATGATAGAGATGGGAAGGAGAAATTGGAGAAGAA < 41bp 1 0.759670053219375 NA NA experiment 0.480659893561251 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SREK1 ENSG00000153914 CDS Human protein_coding chr5:65473450 chr5:65473459 synonymous SNV . 0 30 hm7G_associated_SNPs_1199 0 0 1 0 1 SREK1 chr5:65473486 5'GT 65473486 Upstream 28bp 1159 chr12 69993708 69993708 1 + C T UCEC 69993702 + 69993682 69993722 41 GTATAACAGAAAGTTTTCAAGTGAAGCGACAGGTTCTTCTG GTATAACAGAAAGTTTTCAAGTGAAGTGACAGGTTCTTCTG < 41bp 1 0.745561627572822 NA NA experiment 0.508876744854357 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CCT2 ENSG00000166226 CDS Human protein_coding chr12:69993702 chr12:69993708 stopgain 0.998 1 27 hm7G_associated_SNPs_1201 0 0 1 0 2 CCT2 chr12:69993643 3'AG 69993643 Downstream 66bp 1160 chr12 69993708 69993708 1 + C T UCEC 69993702 + 69993682 69993722 41 GTATAACAGAAAGTTTTCAAGTGAAGCGACAGGTTCTTCTG GTATAACAGAAAGTTTTCAAGTGAAGTGACAGGTTCTTCTG < 41bp 1 0.745561627572822 NA NA experiment 0.508876744854357 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment CCT2 ENSG00000166226 CDS Human protein_coding chr12:69993702 chr12:69993708 stopgain 0.998 1 27 hm7G_associated_SNPs_1201 0 0 1 0 2 CCT2 chr12:69993784 5'GT 69993784 Upstream 77bp 1161 chr16 30780224 30780224 1 + C T UCEC 30780205 + 30780185 30780225 41 GGAATTGGAGGAGAGGGATCGAAGGGAGAGCAAGAAGATCG GGAATTGGAGGAGAGGGATCGAAGGGAGAGCAAGAAGATTG < 41bp 1 0.788195645279637 NA NA experiment 0.423608709440727 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30780205 chr16:30780224 synonymous SNV . 0 40 hm7G_associated_SNPs_1202 0 0 1 0 2 RNF40 chr16:30780159 3'AG 30780159 Downstream 66bp 1162 chr16 30780224 30780224 1 + C T UCEC 30780205 + 30780185 30780225 41 GGAATTGGAGGAGAGGGATCGAAGGGAGAGCAAGAAGATCG GGAATTGGAGGAGAGGGATCGAAGGGAGAGCAAGAAGATTG < 41bp 1 0.788195645279637 NA NA experiment 0.423608709440727 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control RNF40 ENSG00000103549 CDS Human protein_coding chr16:30780205 chr16:30780224 synonymous SNV . 0 40 hm7G_associated_SNPs_1202 0 0 1 0 2 RNF40 chr16:30780308 5'GT 30780308 Upstream 85bp 1163 chr16 30744624 30744624 1 + C A UCEC 30744641 + 30744621 30744661 41 GTGCTGTTGCGGCAGCTCAAGGCAGAGGGCCACCGAGTGCT GTGATGTTGCGGCAGCTCAAGGCAGAGGGCCACCGAGTGCT < 41bp 1 0.588094749492372 NA NA experiment 0.823810501015256 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SRCAP ENSG00000080603 CDS Human protein_coding chr16:30744641 chr16:30744624 nonsynonymous SNV 1.000 4 4 hm7G_associated_SNPs_1203 0 0 1 0 1 SRCAP chr16:30744601 3'AG 30744601 Downstream 24bp 1164 chr1 112003549 112003549 1 + C T UCEC 112003559 + 112003539 112003579 41 GAAAAGGAGACAATTGCCAAGTGCATTGCGGACCTAAAGCT GAAAAGGAGATAATTGCCAAGTGCATTGCGGACCTAAAGCT < 41bp 1 0.709135365824733 NA NA experiment 0.581729268350534 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ATP5F1 ENSG00000116459 CDS Human protein_coding chr1:112003559 chr1:112003549 nonsynonymous SNV 0.994 1 11 hm7G_associated_SNPs_1204 0 0 1 2 1 ATP5F1 chr1:112003539 3'AG 112003539 Downstream 11bp 1165 chr12 1346033 1346033 1 + G A UCEC 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGCGCGACGACAGGAGGACAATCTCA < 41bp 1 0.563576148816426 NA NA experiment 0.872847702367148 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346033 nonsynonymous SNV 0.864 4 27 hm7G_associated_SNPs_1208 0 0 1 0 2 ERC1 chr12:1345935 3'AG 1345935 Downstream 99bp 1166 chr12 1346033 1346033 1 + G A UCEC 1346027 + 1346007 1346047 41 ACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCA ACAAATGTTAGAGGAGGCGCGACGACAGGAGGACAATCTCA < 41bp 1 0.563576148816426 NA NA experiment 0.872847702367148 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ERC1 ENSG00000082805 CDS Human protein_coding chr12:1346027 chr12:1346033 nonsynonymous SNV 0.864 4 27 hm7G_associated_SNPs_1208 0 0 1 0 2 ERC1 chr12:1346070 5'GT 1346070 Upstream 38bp 1167 chr11 65827028 65827028 1 + C T UCEC 65827009 + 65826989 65827029 41 AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGTG < 41bp 1 0.765354709391192 NA NA experiment 0.469290581217617 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827009 chr11:65827028 nonsynonymous SNV 1.000 4 40 hm7G_associated_SNPs_1209 0 0 1 0 2 SF3B2 chr11:65826986 3'AG 65826986 Downstream 43bp 1168 chr11 65827028 65827028 1 + C T UCEC 65827009 + 65826989 65827029 41 AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGTG < 41bp 1 0.765354709391192 NA NA experiment 0.469290581217617 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827009 chr11:65827028 nonsynonymous SNV 1.000 4 40 hm7G_associated_SNPs_1209 0 0 1 0 2 SF3B2 chr11:65827066 5'GT 65827066 Upstream 39bp 1169 chr11 65827028 65827028 1 + C T UCEC 65827018 + 65826998 65827038 41 GAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCGCCGAATGAA GAAGCCCCCAAGCTGTCCAAGAAGAAGTTGTGCCGAATGAA < 41bp 1 0.768168317491582 NA NA experiment 0.463663365016836 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827018 chr11:65827028 nonsynonymous SNV 1.000 4 31 hm7G_associated_SNPs_1210 0 0 1 0 2 SF3B2 chr11:65826986 3'AG 65826986 Downstream 43bp 1170 chr11 65827028 65827028 1 + C T UCEC 65827018 + 65826998 65827038 41 GAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCGCCGAATGAA GAAGCCCCCAAGCTGTCCAAGAAGAAGTTGTGCCGAATGAA < 41bp 1 0.768168317491582 NA NA experiment 0.463663365016836 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827018 chr11:65827028 nonsynonymous SNV 1.000 4 31 hm7G_associated_SNPs_1210 0 0 1 0 2 SF3B2 chr11:65827066 5'GT 65827066 Upstream 39bp 1171 chr20 57480443 57480443 1 + C A UCEC 57480458 + 57480438 57480478 41 GAATTCTATGAGCATGCCAAGGCTCTGTGGGAGGATGAAGG GAATTATATGAGCATGCCAAGGCTCTGTGGGAGGATGAAGG < 41bp 1 0.755145544852471 NA NA experiment 0.489708910295058 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57480458 chr20:57480443 nonsynonymous SNV 0.992 4 6 hm7G_associated_SNPs_1213 0 0 1 2 2 GNAS chr20:57480438 3'AG 57480438 Downstream 6bp 1172 chr20 57480443 57480443 1 + C A UCEC 57480458 + 57480438 57480478 41 GAATTCTATGAGCATGCCAAGGCTCTGTGGGAGGATGAAGG GAATTATATGAGCATGCCAAGGCTCTGTGGGAGGATGAAGG < 41bp 1 0.755145544852471 NA NA experiment 0.489708910295058 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57480458 chr20:57480443 nonsynonymous SNV 0.992 4 6 hm7G_associated_SNPs_1213 0 0 1 2 2 GNAS chr20:57480535 5'GT 57480535 Upstream 93bp 1173 chr12 104337047 104337047 1 + G T UCEC 104337030 + 104337010 104337050 41 TGAGAAAACTAAGGAGAGTCGTGAAGCAGTTGAGAAAGAAT TGAGAAAACTAAGGAGAGTCGTGAAGCAGTTGAGAAATAAT < 41bp 1 0.736097955559909 NA NA experiment 0.527804088880182 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104337030 chr12:104337047 stopgain 0.994 1 38 hm7G_associated_SNPs_1214 0 0 1 0 1 HSP90B1 chr12:104337097 5'GT 104337097 Upstream 51bp 1174 chr20 57484249 57484249 1 + C T UCEC 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGT < 41bp 1 0.767385497843651 NA NA experiment 0.465229004312697 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484249 nonsynonymous SNV 0.959 1 41 hm7G_associated_SNPs_1215 0 0 1 0 2 GNAS chr20:57484217 3'AG 57484217 Downstream 33bp 1175 chr20 57484249 57484249 1 + C T UCEC 57484229 + 57484209 57484249 41 TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGC TCTCCCAGCTTCCTGGACAAGATCGACGTGATCAAGCAGGT < 41bp 1 0.767385497843651 NA NA experiment 0.465229004312697 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment |31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment GNAS ENSG00000087460 CDS Human protein_coding chr20:57484229 chr20:57484249 nonsynonymous SNV 0.959 1 41 hm7G_associated_SNPs_1215 0 0 1 0 2 GNAS chr20:57484271 5'GT 57484271 Upstream 23bp 1176 chr19 33078197 33078197 1 + C T UCEC 33078214 + 33078194 33078234 41 TGACGATTATTGAACTACAAGTGCTCACAGACTAGAACTTA TGATGATTATTGAACTACAAGTGCTCACAGACTAGAACTTA < 41bp 1 0.421827869924415 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PDCD5 ENSG00000105185 CDS Human protein_coding chr19:33078214 chr19:33078197 synonymous SNV . 0 4 hm7G_associated_SNPs_1216 0 0 1 0 1 PDCD5 chr19:33078159 3'AG 33078159 Downstream 39bp 1177 chr1 201843467 201843467 1 + G A UCEC 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCACT < 41bp 1 0.40194381008972 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843467 nonsynonymous SNV 0.992 1 39 hm7G_associated_SNPs_1217 0 0 1 0 2 IPO9 chr1:201843378 3'AG 201843378 Downstream 90bp 1178 chr1 201843467 201843467 1 + G A UCEC 201843449 + 201843429 201843469 41 TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCGCT TCATCAACGAGCTCTCCAACGTCATGGAGGCTAATGCCACT < 41bp 1 0.40194381008972 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control IPO9 ENSG00000198700 CDS Human protein_coding chr1:201843449 chr1:201843467 nonsynonymous SNV 0.992 1 39 hm7G_associated_SNPs_1217 0 0 1 0 2 IPO9 chr1:201843500 5'GT 201843500 Upstream 34bp 1179 chr1 156104602 156104602 1 + C T UCEC 156104613 + 156104593 156104633 41 CAGGAGCTGCGTGAGACCAAGCGCCGTCATGAGACCCGACT CAGGAGCTGTGTGAGACCAAGCGCCGTCATGAGACCCGACT < 41bp 1 0.681920939122149 NA NA experiment 0.636158121755702 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156104613 chr1:156104602 nonsynonymous SNV 0.992 5 10 hm7G_associated_SNPs_1218 3 0 1 0 1 LMNA chr1:156104596 3'AG 156104596 Downstream 7bp 1180 chr20 1144997 1144997 1 + G A UCEC 1145012 + 1144992 1145032 41 CCTGAGATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCT CCTGAAATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCT < 41bp 1 0.580189957757746 NA NA experiment 0.839620084484509 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1145012 chr20:1144997 nonsynonymous SNV 1.000 3 6 hm7G_associated_SNPs_1219 0 0 1 0 1 PSMF1 chr20:1144962 3'AG 1144962 Downstream 36bp 1181 chr17 4443163 4443163 1 - C T UCEC 4443151 - 4443131 4443171 41 CCAGAGACGAAGAAGCGCAAGAAACGCAAGTCAGAGGATGG CCAGAGACAAAGAAGCGCAAGAAACGCAAGTCAGAGGATGG < 41bp 1 0.781987986365795 NA NA experiment 0.436024027268411 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MYBBP1A ENSG00000132382 CDS Human protein_coding chr17:4443151 chr17:4443163 synonymous SNV . 0 9 hm7G_associated_SNPs_1221 0 0 1 0 1 MYBBP1A chr17:4443262 3'AG 4443262 Downstream 100bp 1182 chr17 80443408 80443408 1 + A G UCEC 80443411 + 80443391 80443431 41 GGTCACCCTTGAGAAGAACGGAGAGGTGGTGTTACGCTTTG GGTCACCCTTGAGAAGAGCGGAGAGGTGGTGTTACGCTTTG < 41bp 1 0.343535183139923 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control NARF ENSG00000141562 CDS Human protein_coding chr17:80443411 chr17:80443408 nonsynonymous SNV 0.366 0 18 hm7G_associated_SNPs_1222 0 0 1 0 1 NARF chr17:80443373 3'AG 80443373 Downstream 36bp 1183 chr19 10368928 10368928 1 + C T UCEC 10368931 + 10368911 10368951 41 TGGCCCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA TGGCCCCCGGGGCCCCATAAGTTACTACTACATGCTGCCCA < 41bp 1 0.484999281125177 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368931 chr19:10368928 stopgain 0.975 2 18 hm7G_associated_SNPs_1223 0 0 1 0 2 MRPL4 chr19:10368898 3'AG 10368898 Downstream 31bp 1184 chr19 10368928 10368928 1 + C T UCEC 10368931 + 10368911 10368951 41 TGGCCCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCA TGGCCCCCGGGGCCCCATAAGTTACTACTACATGCTGCCCA < 41bp 1 0.484999281125177 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment MRPL4 ENSG00000105364 CDS Human protein_coding chr19:10368931 chr19:10368928 stopgain 0.975 2 18 hm7G_associated_SNPs_1223 0 0 1 0 2 MRPL4 chr19:10369004 5'GT 10369004 Upstream 77bp 1185 chr11 64974107 64974107 1 + C T UCEC 64974095 + 64974075 64974115 41 TCCACCTTCGAGCCCAACAAGGAGGGCGACTTCGTGCTGCG TCCACCTTCGAGCCCAACAAGGAGGGCGACTTTGTGCTGCG < 41bp 1 0.72787221614473 NA NA experiment 0.544255567710539 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64974095 chr11:64974107 synonymous SNV . 0 33 hm7G_associated_SNPs_1224 0 0 1 0 1 CAPN1 chr11:64974145 5'GT 64974145 Upstream 39bp 1186 chr1 116930006 116930006 1 + C T UCEC 116929999 + 116929979 116930019 41 ACTACTCCTGAATGGATCAAGTTTTGTCGGCAGCTCTTTGG ACTACTCCTGAATGGATCAAGTTTTGTTGGCAGCTCTTTGG < 41bp 1 0.464339555941472 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116929999 chr1:116930006 nonsynonymous SNV 0.998 3 28 hm7G_associated_SNPs_1225 0 0 1 0 1 ATP1A1 chr1:116929910 3'AG 116929910 Downstream 97bp 1187 chr22 24236756 24236756 1 + G A UCEC 24236760 + 24236740 24236780 41 CTGGCGCAGGCCACCGGCAAGCCCCCCCAGGTTTGCCGGGA CTGGCGCAGGCCACCGACAAGCCCCCCCAGGTTTGCCGGGA < 41bp 1 0.794898262293341 NA NA experiment 0.410203475413319 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control MIF ENSG00000240972 CDS Human protein_coding chr22:24236760 chr22:24236756 nonsynonymous SNV 0.996 1 17 hm7G_associated_SNPs_1226 0 0 1 0 1 MIF chr22:24236769 5'GT 24236769 Upstream 14bp 1188 chr11 63756170 63756170 1 + G A UCEC 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCAGTCCTATACAAGGAGTATGCTGAAGATGACAA < 41bp 1 0.77618893062965 NA NA experiment 0.447622138740701 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756170 nonsynonymous SNV . 0 9 hm7G_associated_SNPs_1227 0 0 1 0 3 OTUB1 chr11:63756099 3'AG 63756099 Downstream 72bp 1189 chr11 63756170 63756170 1 + G A UCEC 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCAGTCCTATACAAGGAGTATGCTGAAGATGACAA < 41bp 1 0.77618893062965 NA NA experiment 0.447622138740701 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756170 nonsynonymous SNV . 0 9 hm7G_associated_SNPs_1227 0 0 1 0 3 OTUB1 chr11:63756126 3'AG 63756126 Downstream 45bp 1190 chr11 63756170 63756170 1 + G A UCEC 63756182 + 63756162 63756202 41 GAGCTCTCGGTCCTATACAAGGAGTATGCTGAAGATGACAA GAGCTCTCAGTCCTATACAAGGAGTATGCTGAAGATGACAA < 41bp 1 0.77618893062965 NA NA experiment 0.447622138740701 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63756182 chr11:63756170 nonsynonymous SNV . 0 9 hm7G_associated_SNPs_1227 0 0 1 0 3 OTUB1 chr11:63756224 5'GT 63756224 Upstream 55bp 1191 chr16 56643238 56643238 1 + C T UCEC 56643248 + 56643228 56643268 41 TGCAAAGGGGCGTCGGACAAGTGCAGCTGCTGCGCCTGATG TGCAAAGGGGTGTCGGACAAGTGCAGCTGCTGCGCCTGATG < 41bp 1 0.636179471648333 NA NA experiment 0.727641056703334 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control MT2A ENSG00000125148 CDS Human protein_coding chr16:56643248 chr16:56643238 nonsynonymous SNV 0.693 1 11 hm7G_associated_SNPs_1228 0 0 1 0 1 MT2A chr16:56643175 3'AG 56643175 Downstream 64bp 1192 chr7 135322747 135322747 1 + C T UCEC 135322745 + 135322725 135322765 41 TGCGTCAGTTTAAATTTCAAGACGATAATGTGGAGGGAGAT TGCGTCAGTTTAAATTTCAAGATGATAATGTGGAGGGAGAT < 41bp 1 0.759953994528727 NA NA experiment 0.480092010942546 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135322745 chr7:135322747 synonymous SNV . 0 23 hm7G_associated_SNPs_1229 0 0 1 1 2 NUP205 chr7:135322679 3'AG 135322679 Downstream 69bp 1193 chr7 135322747 135322747 1 + C T UCEC 135322745 + 135322725 135322765 41 TGCGTCAGTTTAAATTTCAAGACGATAATGTGGAGGGAGAT TGCGTCAGTTTAAATTTCAAGATGATAATGTGGAGGGAGAT < 41bp 1 0.759953994528727 NA NA experiment 0.480092010942546 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135322745 chr7:135322747 synonymous SNV . 0 23 hm7G_associated_SNPs_1229 0 0 1 1 2 NUP205 chr7:135322807 5'GT 135322807 Upstream 61bp 1194 chr16 2026246 2026246 1 + C T UCEC 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT CGTATCTGGAGAATGAACAAGGTTGGCCAGGTGATGTGCGT < 41bp 1 0.633427934618693 NA NA experiment 0.733144130762613 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026246 nonsynonymous SNV 1.000 0 23 hm7G_associated_SNPs_1230 0 0 1 0 3 TBL3 chr16:2026212 3'AG 2026212 Downstream 35bp 1195 chr16 2026246 2026246 1 + C T UCEC 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT CGTATCTGGAGAATGAACAAGGTTGGCCAGGTGATGTGCGT < 41bp 1 0.633427934618693 NA NA experiment 0.733144130762613 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026246 nonsynonymous SNV 1.000 0 23 hm7G_associated_SNPs_1230 0 0 1 0 3 TBL3 chr16:2026258 5'GT 2026258 Upstream 13bp 1196 chr16 2026246 2026246 1 + C T UCEC 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT CGTATCTGGAGAATGAACAAGGTTGGCCAGGTGATGTGCGT < 41bp 1 0.633427934618693 NA NA experiment 0.733144130762613 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026246 nonsynonymous SNV 1.000 0 23 hm7G_associated_SNPs_1230 0 0 1 0 3 TBL3 chr16:2026315 5'GT 2026315 Upstream 70bp 1197 chr7 149575795 149575795 1 + A G UCEC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGGACCCCCTGTTCGGGCCCCAGCTGAAGAA < 41bp 1 0.775419722424124 NA NA experiment 0.449160555151752 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575795 nonsynonymous SNV 0.999 3 13 hm7G_associated_SNPs_1231 0 0 1 0 3 ATP6V0E2 chr7:149575767 3'AG 149575767 Downstream 29bp 1198 chr7 149575795 149575795 1 + A G UCEC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGGACCCCCTGTTCGGGCCCCAGCTGAAGAA < 41bp 1 0.775419722424124 NA NA experiment 0.449160555151752 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575803 chr7:149575795 nonsynonymous SNV 0.999 3 13 hm7G_associated_SNPs_1231 0 0 1 0 3 ATP6V0E2 chr7:149575835 5'GT 149575835 Upstream 41bp 1199 chr7 149575795 149575795 1 + A G UCEC 149575803 + 149575783 149575823 41 CTGGCGCAGCTGAACCCCCTGTTCGGGCCCCAGCTGAAGAA CTGGCGCAGCTGGACCCCCTGTTCGGGCCCCAGCTGAAGAA < 41bp 1 0.775419722424124 NA NA experiment 0.449160555151752 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control ATP6V0E2 ENSG00000171130 CDS Human antisense chr7:149575803 chr7:149575795 nonsynonymous SNV 0.999 3 13 hm7G_associated_SNPs_1231 0 0 1 0 3 ATP6V0E2 chr7:149575879 5'GT 149575879 Upstream 85bp 1200 chr17 74732278 74732278 1 - T C UCEC 74732276 - 74732256 74732296 41 CGATCGAAGAGTCCCCCCAAGTCTCCTGAAGAGGAAGGAGC CGATCGAAGAGTCCCCCCGAGTCTCCTGAAGAGGAAGGAGC < 41bp 1 0.777767566233209 NA NA experiment 0.444464867533582 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control SRSF2 ENSG00000161547 CDS Human protein_coding chr17:74732276 chr17:74732278 nonsynonymous SNV 0.811 3 19 hm7G_associated_SNPs_1232 0 0 1 0 1 SRSF2 chr17:74732236 5'GT 74732236 Upstream 43bp 1201 chr1 156104615 156104615 1 + G A UCEC 156104613 + 156104593 156104633 41 CAGGAGCTGCGTGAGACCAAGCGCCGTCATGAGACCCGACT CAGGAGCTGCGTGAGACCAAGCACCGTCATGAGACCCGACT < 41bp 1 0.746287725026407 NA NA experiment 0.507424549947186 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control LMNA ENSG00000160789 CDS Human protein_coding chr1:156104613 chr1:156104615 nonsynonymous SNV 0.973 5 23 hm7G_associated_SNPs_1233 0 0 1 0 1 LMNA chr1:156104596 3'AG 156104596 Downstream 20bp 1202 chr12 98991667 98991667 1 + G A UCEC 98991654 + 98991634 98991674 41 GTGGACCCCCAAAAGTACAAGGGCATATTTAACGGATTCTC GTGGACCCCCAAAAGTACAAGGGCATATTTAACAGATTCTC < 41bp 1 0.479877868563692 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98991654 chr12:98991667 nonsynonymous SNV 0.998 4 34 hm7G_associated_SNPs_1234 0 0 1 0 1 SLC25A3 chr12:98991634 3'AG 98991634 Downstream 34bp 1203 chr16 2026224 2026224 1 + C T UCEC 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT TGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT < 41bp 1 0.590250074199264 NA NA experiment 0.819499851601472 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026224 nonsynonymous SNV 0.094 0 1 hm7G_associated_SNPs_1236 0 0 1 0 3 TBL3 chr16:2026212 3'AG 2026212 Downstream 13bp 1204 chr16 2026224 2026224 1 + C T UCEC 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT TGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT < 41bp 1 0.590250074199264 NA NA experiment 0.819499851601472 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026224 nonsynonymous SNV 0.094 0 1 hm7G_associated_SNPs_1236 0 0 1 0 3 TBL3 chr16:2026258 5'GT 2026258 Upstream 35bp 1205 chr16 2026224 2026224 1 + C T UCEC 2026244 + 2026224 2026264 41 CGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT TGTATCTGGAGAATGAACAAGGCTGGCCAGGTGATGTGCGT < 41bp 1 0.590250074199264 NA NA experiment 0.819499851601472 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TBL3 ENSG00000183751 CDS Human protein_coding chr16:2026244 chr16:2026224 nonsynonymous SNV 0.094 0 1 hm7G_associated_SNPs_1236 0 0 1 0 3 TBL3 chr16:2026315 5'GT 2026315 Upstream 92bp 1206 chr11 70265910 70265910 1 + C T UCEC 70265914 + 70265894 70265934 41 ACAAAGTGGATAAGAGCGCCGTTGGCTTTGAGTATCAAGGC ACAAAGTGGATAAGAGTGCCGTTGGCTTTGAGTATCAAGGC < 41bp 1 0.75829162614913 NA NA experiment 0.48341674770174 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70265914 chr11:70265910 synonymous SNV . 0 17 hm7G_associated_SNPs_1238 0 0 1 0 2 CTTN chr11:70265852 3'AG 70265852 Downstream 59bp 1207 chr11 70265910 70265910 1 + C T UCEC 70265914 + 70265894 70265934 41 ACAAAGTGGATAAGAGCGCCGTTGGCTTTGAGTATCAAGGC ACAAAGTGGATAAGAGTGCCGTTGGCTTTGAGTATCAAGGC < 41bp 1 0.75829162614913 NA NA experiment 0.48341674770174 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CTTN ENSG00000085733 CDS Human protein_coding chr11:70265914 chr11:70265910 synonymous SNV . 0 17 hm7G_associated_SNPs_1238 0 0 1 0 2 CTTN chr11:70265962 5'GT 70265962 Upstream 53bp 1208 chr11 65827010 65827010 1 + C T UCEC 65827009 + 65826989 65827029 41 AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG AAGAAGCCAGAAGCCCCCAAGTTGTCCAAGAAGAAGTTGCG < 41bp 1 0.672948067819206 NA NA experiment 0.654103864361588 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827009 chr11:65827010 synonymous SNV . 0 22 hm7G_associated_SNPs_1239 0 0 1 0 2 SF3B2 chr11:65826986 3'AG 65826986 Downstream 25bp 1209 chr11 65827010 65827010 1 + C T UCEC 65827009 + 65826989 65827029 41 AAGAAGCCAGAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCG AAGAAGCCAGAAGCCCCCAAGTTGTCCAAGAAGAAGTTGCG < 41bp 1 0.672948067819206 NA NA experiment 0.654103864361588 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827009 chr11:65827010 synonymous SNV . 0 22 hm7G_associated_SNPs_1239 0 0 1 0 2 SF3B2 chr11:65827066 5'GT 65827066 Upstream 57bp 1210 chr11 65827010 65827010 1 + C T UCEC 65827018 + 65826998 65827038 41 GAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCGCCGAATGAA GAAGCCCCCAAGTTGTCCAAGAAGAAGTTGCGCCGAATGAA < 41bp 1 0.79699206030586 NA NA experiment 0.406015879388279 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827018 chr11:65827010 synonymous SNV . 0 13 hm7G_associated_SNPs_1240 0 0 1 0 2 SF3B2 chr11:65826986 3'AG 65826986 Downstream 25bp 1211 chr11 65827010 65827010 1 + C T UCEC 65827018 + 65826998 65827038 41 GAAGCCCCCAAGCTGTCCAAGAAGAAGTTGCGCCGAATGAA GAAGCCCCCAAGTTGTCCAAGAAGAAGTTGCGCCGAATGAA < 41bp 1 0.79699206030586 NA NA experiment 0.406015879388279 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827018 chr11:65827010 synonymous SNV . 0 13 hm7G_associated_SNPs_1240 0 0 1 0 2 SF3B2 chr11:65827066 5'GT 65827066 Upstream 57bp 1212 chr11 111896368 111896368 1 + C T UCEC 111896387 + 111896367 111896407 41 ACTGTGCGGCTGGACCCCCAGTTCTGGGGCCACGCCGCGGA ATTGTGCGGCTGGACCCCCAGTTCTGGGGCCACGCCGCGGA < 41bp 1 0.581709481714499 NA NA experiment 0.836581036571002 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control DLAT ENSG00000150768 CDS Human protein_coding chr11:111896387 chr11:111896368 synonymous SNV . 0 2 hm7G_associated_SNPs_1241 0 0 1 0 1 DLAT chr11:111896348 3'AG 111896348 Downstream 21bp 1213 chr11 64085790 64085790 1 + G A UCEC 64085779 + 64085759 64085799 41 GTCTGCGGCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGT GTCTGCGGCAGCGGCAGCAAGACGGTACAGTAAAGGAGAGT < 41bp 1 0.786810670651261 NA NA experiment 0.426378658697478 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64085779 chr11:64085790 nonsynonymous SNV 0.003 0 32 hm7G_associated_SNPs_1242 0 0 1 0 1 PRDX5 chr11:64085858 5'GT 64085858 Upstream 69bp 1214 chr18 46145987 46145987 1 + C T UCEC 46146000 + 46145980 46146020 41 GCAGCCGCTCCCAGGAGATCGAGGAGCTGGAGCGCTTCATC GCAGCCGTTCCCAGGAGATCGAGGAGCTGGAGCGCTTCATC < 41bp 1 0.225277810517476 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control CTIF ENSG00000134030 CDS Human protein_coding chr18:46146000 chr18:46145987 synonymous SNV . 0 8 hm7G_associated_SNPs_1243 0 0 1 0 1 CTIF chr18:46145909 3'AG 46145909 Downstream 79bp 1215 chr19 50000791 50000791 1 + C T UCEC 50000803 + 50000783 50000823 41 GAGGGCACCTACATTGACAAGAAATGCCCCTTCACTGGTAA GAGGGCACTTACATTGACAAGAAATGCCCCTTCACTGGTAA < 41bp 1 0.633615731463611 NA NA experiment 0.732768537072778 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPS11 ENSG00000142534 CDS Human protein_coding chr19:50000803 chr19:50000791 nonsynonymous SNV . 0 9 hm7G_associated_SNPs_1244 0 0 1 0 2 RPS11 chr19:50000777 3'AG 50000777 Downstream 15bp 1216 chr19 50000791 50000791 1 + C T UCEC 50000803 + 50000783 50000823 41 GAGGGCACCTACATTGACAAGAAATGCCCCTTCACTGGTAA GAGGGCACTTACATTGACAAGAAATGCCCCTTCACTGGTAA < 41bp 1 0.633615731463611 NA NA experiment 0.732768537072778 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPS11 ENSG00000142534 CDS Human protein_coding chr19:50000803 chr19:50000791 nonsynonymous SNV . 0 9 hm7G_associated_SNPs_1244 0 0 1 0 2 RPS11 chr19:50000852 5'GT 50000852 Upstream 62bp 1217 chr11 118518706 118518706 1 + G A UCEC 118518690 + 118518670 118518710 41 CAGGCCCTGGAGGAGGAGCGGCGGAGGCGTGAGCAGGTAGA CAGGCCCTGGAGGAGGAGCGGCGGAGGCGTGAGCAGATAGA < 41bp 1 0.691355499856093 NA NA experiment 0.617289000287813 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118518690 chr11:118518706 nonsynonymous SNV 0.998 0 37 hm7G_associated_SNPs_1245 0 0 1 0 2 PHLDB1 chr11:118518646 3'AG 118518646 Downstream 61bp 1218 chr11 118518706 118518706 1 + G A UCEC 118518690 + 118518670 118518710 41 CAGGCCCTGGAGGAGGAGCGGCGGAGGCGTGAGCAGGTAGA CAGGCCCTGGAGGAGGAGCGGCGGAGGCGTGAGCAGATAGA < 41bp 1 0.691355499856093 NA NA experiment 0.617289000287813 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control PHLDB1 ENSG00000019144 CDS Human protein_coding chr11:118518690 chr11:118518706 nonsynonymous SNV 0.998 0 37 hm7G_associated_SNPs_1245 0 0 1 0 2 PHLDB1 chr11:118518792 5'GT 118518792 Upstream 87bp 1219 chr19 59056833 59056833 1 + G T UCEC 59056814 + 59056794 59056834 41 GTGGACTGTCCCGTGTGCAAGCAACAGTGCTTCTCCAAAGA GTGGACTGTCCCGTGTGCAAGCAACAGTGCTTCTCCAAATA < 41bp 1 0.570777221459735 NA NA experiment 0.858445557080531 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59056814 chr19:59056833 nonsynonymous SNV 0.999 1 40 hm7G_associated_SNPs_1246 0 0 1 0 2 TRIM28 chr19:59056792 3'AG 59056792 Downstream 42bp 1220 chr19 59056833 59056833 1 + G T UCEC 59056814 + 59056794 59056834 41 GTGGACTGTCCCGTGTGCAAGCAACAGTGCTTCTCCAAAGA GTGGACTGTCCCGTGTGCAAGCAACAGTGCTTCTCCAAATA < 41bp 1 0.570777221459735 NA NA experiment 0.858445557080531 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59056814 chr19:59056833 nonsynonymous SNV 0.999 1 40 hm7G_associated_SNPs_1246 0 0 1 0 2 TRIM28 chr19:59056904 5'GT 59056904 Upstream 72bp 1221 chr1 32497146 32497146 1 + C A UCEC 32497158 + 32497138 32497178 41 GGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTG GGAAGATTATTGGACCACAAGGGAATACAATCAAAAGACTG < 41bp 1 0.68638033556134 NA NA experiment 0.627239328877319 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32497158 chr1:32497146 nonsynonymous SNV 1.000 4 9 hm7G_associated_SNPs_1247 0 0 1 0 2 KHDRBS1 chr1:32497125 3'AG 32497125 Downstream 22bp 1222 chr1 32497146 32497146 1 + C A UCEC 32497158 + 32497138 32497178 41 GGAAGATTCTTGGACCACAAGGGAATACAATCAAAAGACTG GGAAGATTATTGGACCACAAGGGAATACAATCAAAAGACTG < 41bp 1 0.68638033556134 NA NA experiment 0.627239328877319 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32497158 chr1:32497146 nonsynonymous SNV 1.000 4 9 hm7G_associated_SNPs_1247 0 0 1 0 2 KHDRBS1 chr1:32497241 5'GT 32497241 Upstream 96bp 1223 chr15 64448304 64448304 1 - C T UCEC 64448315 - 64448295 64448335 41 CGGAAGGTGGAGAGCACCAAGACAGACAGCCGGGATAAACC CGGAAGGTGGAGAGCACCAAGACAGACAGCCAGGATAAACC < 41bp 1 0.658347946483483 NA NA experiment 0.683304107033035 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PPIB ENSG00000166794 CDS Human protein_coding chr15:64448315 chr15:64448304 nonsynonymous SNV 0.991 2 32 hm7G_associated_SNPs_1249 1 0 1 0 1 PPIB chr15:64448344 3'AG 64448344 Downstream 41bp 1224 chr7 135322737 135322737 1 + A C UCEC 135322745 + 135322725 135322765 41 TGCGTCAGTTTAAATTTCAAGACGATAATGTGGAGGGAGAT TGCGTCAGTTTACATTTCAAGACGATAATGTGGAGGGAGAT < 41bp 1 0.677849264324183 NA NA experiment 0.644301471351635 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135322745 chr7:135322737 nonsynonymous SNV 1.000 1 13 hm7G_associated_SNPs_1250 0 0 1 1 2 NUP205 chr7:135322679 3'AG 135322679 Downstream 59bp 1225 chr7 135322737 135322737 1 + A C UCEC 135322745 + 135322725 135322765 41 TGCGTCAGTTTAAATTTCAAGACGATAATGTGGAGGGAGAT TGCGTCAGTTTACATTTCAAGACGATAATGTGGAGGGAGAT < 41bp 1 0.677849264324183 NA NA experiment 0.644301471351635 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control NUP205 ENSG00000155561 CDS Human protein_coding chr7:135322745 chr7:135322737 nonsynonymous SNV 1.000 1 13 hm7G_associated_SNPs_1250 0 0 1 1 2 NUP205 chr7:135322807 5'GT 135322807 Upstream 71bp 1226 chr3 23631289 23631289 1 + G T UCEC 23631307 + 23631287 23631327 41 ATGGCCAGACAGTGGACCAAGCGGTACGCCACATAGGGGCC ATTGCCAGACAGTGGACCAAGCGGTACGCCACATAGGGGCC < 41bp 1 0.574053929586078 NA NA experiment 0.851892140827845 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment UBE2E2 ENSG00000182247 CDS Human protein_coding chr3:23631307 chr3:23631289 nonsynonymous SNV 1.000 1 3 hm7G_associated_SNPs_1251 0 0 1 2 1 UBE2E2 chr3:23631225 3'AG 23631225 Downstream 65bp 1227 chr19 54609272 54609272 1 + C T UCEC 54609275 + 54609255 54609295 41 CCATTGAGCCCCTACTTCAAGTACTCCGTCATGATCAACAA CCATTGAGCCCCTACTTTAAGTACTCCGTCATGATCAACAA < 41bp 1 0.721997724366906 NA NA experiment 0.556004551266187 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609275 chr19:54609272 stopgain 0.007 0 18 hm7G_associated_SNPs_1252 0 0 1 0 2 NDUFA3 chr19:54609241 3'AG 54609241 Downstream 32bp 1228 chr19 54609272 54609272 1 + C T UCEC 54609275 + 54609255 54609295 41 CCATTGAGCCCCTACTTCAAGTACTCCGTCATGATCAACAA CCATTGAGCCCCTACTTTAAGTACTCCGTCATGATCAACAA < 41bp 1 0.721997724366906 NA NA experiment 0.556004551266187 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NDUFA3 ENSG00000170906 CDS Human protein_coding chr19:54609275 chr19:54609272 stopgain 0.007 0 18 hm7G_associated_SNPs_1252 0 0 1 0 2 NDUFA3 chr19:54609318 5'GT 54609318 Upstream 47bp 1229 chr1 228284851 228284851 1 + T C UCEC 228284845 + 228284825 228284865 41 ATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGA ATCTTCGCCAACCTCTTCAAGGGCCTCTTTGGCAAAAAAGA < 41bp 1 0.682582075530817 NA NA experiment 0.634835848938365 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228284845 chr1:228284851 synonymous SNV . 0 27 hm7G_associated_SNPs_1253 0 0 1 0 1 ARF1 chr1:228284779 3'AG 228284779 Downstream 73bp 1230 chr4 109546291 109546291 1 + C T UCEC 109546290 + 109546270 109546310 41 ATTTTCCTTTCTAGGATCAAGCGTGCTTTCCTTATCGAGGA ATTTTCCTTTCTAGGATCAAGTGTGCTTTCCTTATCGAGGA < 41bp 1 0.631636832313873 NA NA experiment 0.736726335372254 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL34 ENSG00000109475 CDS Human protein_coding chr4:109546290 chr4:109546291 nonsynonymous SNV 1.000 0 22 hm7G_associated_SNPs_1255 0 0 1 0 1 RPL34 chr4:109546284 3'AG 109546284 Downstream 8bp 1231 chr17 72205359 72205359 1 + A C UCS 72205339 + 72205319 72205359 41 CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGTGAA CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGTGAC < 41bp 1 0.750323926359695 NA NA experiment 0.49935214728061 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72205339 chr17:72205359 nonsynonymous SNV 1.000 4 41 hm7G_associated_SNPs_1256 0 0 1 0 2 RPL38 chr17:72205326 3'AG 72205326 Downstream 34bp 1232 chr17 72205359 72205359 1 + A C UCS 72205339 + 72205319 72205359 41 CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGTGAA CCGGTAGCTGTCAAGATCAAGAAAAATAAGGACAACGTGAC < 41bp 1 0.750323926359695 NA NA experiment 0.49935214728061 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPL38 ENSG00000172809 CDS Human protein_coding chr17:72205339 chr17:72205359 nonsynonymous SNV 1.000 4 41 hm7G_associated_SNPs_1256 0 0 1 0 2 RPL38 chr17:72205448 5'GT 72205448 Upstream 90bp 1233 chr7 127721495 127721495 1 + C T UCS 127721492 + 127721472 127721512 41 GAGCGATCTGCTAGCTACAAGCCCGTGTTTGTGACTGAGAT GAGCGATCTGCTAGCTACAAGCCTGTGTTTGTGACTGAGAT < 41bp 1 0.381588492633804 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127721492 chr7:127721495 synonymous SNV . 0 24 hm7G_associated_SNPs_1258 0 0 1 0 2 SND1 chr7:127721412 3'AG 127721412 Downstream 84bp 1234 chr7 127721495 127721495 1 + C T UCS 127721492 + 127721472 127721512 41 GAGCGATCTGCTAGCTACAAGCCCGTGTTTGTGACTGAGAT GAGCGATCTGCTAGCTACAAGCCTGTGTTTGTGACTGAGAT < 41bp 1 0.381588492633804 NA NA experiment 1 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment SND1 ENSG00000197157 CDS Human protein_coding chr7:127721492 chr7:127721495 synonymous SNV . 0 24 hm7G_associated_SNPs_1258 0 0 1 0 2 SND1 chr7:127721553 5'GT 127721553 Upstream 59bp 1235 chr19 14578566 14578566 1 + C G UCS 14578569 + 14578549 14578589 41 CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCCG CTGACCCTCGAAGATTTGAAGTTCCTGGCGGTGCTGGGCCG < 41bp 1 0.726881144538302 NA NA experiment 0.546237710923396 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578569 chr19:14578566 nonsynonymous SNV 0.998 3 18 hm7G_associated_SNPs_1259 0 0 1 0 2 PKN1 chr19:14578530 3'AG 14578530 Downstream 37bp 1236 chr19 14578566 14578566 1 + C G UCS 14578569 + 14578549 14578589 41 CTGACCCTCGAAGATTTCAAGTTCCTGGCGGTGCTGGGCCG CTGACCCTCGAAGATTTGAAGTTCCTGGCGGTGCTGGGCCG < 41bp 1 0.726881144538302 NA NA experiment 0.546237710923396 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment PKN1 ENSG00000123143 CDS Human protein_coding chr19:14578569 chr19:14578566 nonsynonymous SNV 0.998 3 18 hm7G_associated_SNPs_1259 0 0 1 0 2 PKN1 chr19:14578605 5'GT 14578605 Upstream 40bp 1237 chr19 17691986 17691986 1 + G A UCS 17691998 + 17691978 17692018 41 CCCCCCAGGTCCGAGTACAAGGCCCACTTCTCCCTCCGCAA CCCCCCAGATCCGAGTACAAGGCCCACTTCTCCCTCCGCAA < 41bp 1 0.639609715427686 NA NA experiment 0.720780569144628 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17691998 chr19:17691986 synonymous SNV . 0 9 hm7G_associated_SNPs_1260 0 0 1 0 1 COLGALT1 chr19:17691986 3'AG 17691986 Downstream 1bp 1238 chr19 5131092 5131092 1 + G A UCS 5131093 + 5131073 5131113 41 TCCTCTTCCCACAGAGGACGGGAGGGGCAAGCTGCGGCCAA TCCTCTTCCCACAGAGGACAGGAGGGGCAAGCTGCGGCCAA < 41bp 1 0.690098277614542 NA NA experiment 0.619803444770915 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control KDM4B ENSG00000127663 CDS Human protein_coding chr19:5131093 chr19:5131092 nonsynonymous SNV 0.462 1 20 hm7G_associated_SNPs_1261 0 0 1 0 1 KDM4B chr19:5131087 3'AG 5131087 Downstream 6bp 1239 chr19 10793251 10793251 1 + C T LAML 10793266 + 10793246 10793286 41 GAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGA GAAGGTAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGA < 41bp 1 0.748868149858913 NA NA experiment 0.502263700282173 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793266 chr19:10793251 synonymous SNV . 0 6 hm7G_associated_SNPs_1263 0 0 1 0 1 ILF3 chr19:10793213 3'AG 10793213 Downstream 39bp 1240 chr16 2807901 2807901 1 + C T LAML 2807898 + 2807878 2807918 41 CTCTTTTGATCCTCAGCGTCGTGCCCGAGAAGCTAAACAAC CTCTTTTGATCCTCAGCGTCGTGTCCGAGAAGCTAAACAAC < 41bp 1 0.478794377918638 NA NA experiment 1 Functional Loss 31031084;GSE112276;m7G-seq;HeLa;Control|31031084;GSE112276;m7G-seq;HepG2;Control SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2807898 chr16:2807901 nonsynonymous SNV 1.000 1 24 hm7G_associated_SNPs_1264 0 0 1 0 1 SRRM2 chr16:2807946 5'GT 2807946 Upstream 46bp 1241 chr1 228285059 228285059 1 + C T LAML 228285071 + 228285051 228285091 41 GTGGAAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTG GTGGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTGTG < 41bp 1 0.653174371407764 NA NA experiment 0.693651257184473 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment ARF1 ENSG00000143761 CDS Human protein_coding chr1:228285071 chr1:228285059 synonymous SNV . 0 9 hm7G_associated_SNPs_1265 0 0 1 0 1 ARF1 chr1:228285153 5'GT 228285153 Upstream 95bp 1242 chr3 184044396 184044396 1 + G A LAML 184044377 + 184044357 184044397 41 GGGCGACTGAGCTGGGGCAAGGGCAGCAGCGGAGGCTCAGG GGGCGACTGAGCTGGGGCAAGGGCAGCAGCGGAGGCTCAAG < 41bp 1 0.785795354337313 NA NA experiment 0.428409291325374 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184044377 chr3:184044396 nonsynonymous SNV 0.997 3 40 hm7G_associated_SNPs_1266 0 0 1 0 2 EIF4G1 chr3:184044315 3'AG 184044315 Downstream 82bp 1243 chr3 184044396 184044396 1 + G A LAML 184044377 + 184044357 184044397 41 GGGCGACTGAGCTGGGGCAAGGGCAGCAGCGGAGGCTCAGG GGGCGACTGAGCTGGGGCAAGGGCAGCAGCGGAGGCTCAAG < 41bp 1 0.785795354337313 NA NA experiment 0.428409291325374 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment EIF4G1 ENSG00000114867 CDS Human protein_coding chr3:184044377 chr3:184044396 nonsynonymous SNV 0.997 3 40 hm7G_associated_SNPs_1266 0 0 1 0 2 EIF4G1 chr3:184044417 5'GT 184044417 Upstream 22bp 1244 chr6 33243626 33243626 1 + T C LAML 33243633 + 33243613 33243653 41 GCAGACATTGACCTCACCAAGAGGGCGGGAGAACTCACTGA GCAGACATTGACCCCACCAAGAGGGCGGGAGAACTCACTGA < 41bp 1 0.788753588647896 NA NA experiment 0.422492822704209 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPS18 ENSG00000231500 CDS Human protein_coding chr6:33243633 chr6:33243626 nonsynonymous SNV 0.998 1 14 hm7G_associated_SNPs_1267 0 0 1 0 1 RPS18 chr6:33243660 5'GT 33243660 Upstream 35bp 1245 chr10 94452165 94452165 1 + G A HNSC 94452165 + 94452145 94452185 41 CCCTTCTTGCAGAGGCCTCTGCATAAAAGGAAAGGCGGCCA CCCTTCTTGCAGAGGCCTCTACATAAAAGGAAAGGCGGCCA Direct Loss 0.990043311193145 0 NA NA prediction 0.980086622386289 Functional Loss - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452165 chr10:94452165 synonymous SNV . 0 21 hm7G_associated_SNPs_1268 0 0 1 0 1 HHEX chr10:94452125 3'AG 94452125 Downstream 41bp 1246 chr16 56704858 56704858 1 + G A UCEC 56704858 + 56704838 56704878 41 TGCCAAGTGTGCCCAGGGCTGCATCTGCAAAGGGGCGTCAG TGCCAAGTGTGCCCAGGGCTACATCTGCAAAGGGGCGTCAG Direct Loss 0.989639084544724 0 NA NA prediction 0.979278169089447 Functional Loss - MT1H ENSG00000205358 CDS Human protein_coding chr16:56704858 chr16:56704858 nonsynonymous SNV 0.048 1 21 hm7G_associated_SNPs_1269 0 0 0 0 1 MT1H chr16:56704810 3'AG 56704810 Downstream 49bp 1247 chr16 23768600 23768600 1 + G A HNSC 23768600 + 23768580 23768620 41 ACCGCACGGTGCAGGAGGCTGATGAAGATGGGGATGGGGCT ACCGCACGGTGCAGGAGGCTAATGAAGATGGGGATGGGGCT Direct Loss 0.989011124844584 0 NA NA prediction 0.978022249689168 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23768600 chr16:23768600 nonsynonymous SNV 0.878 3 21 hm7G_associated_SNPs_1270 0 0 0 0 2 CHP2 chr16:23768522 3'AG 23768522 Downstream 79bp 1248 chr16 23768600 23768600 1 + G A HNSC 23768600 + 23768580 23768620 41 ACCGCACGGTGCAGGAGGCTGATGAAGATGGGGATGGGGCT ACCGCACGGTGCAGGAGGCTAATGAAGATGGGGATGGGGCT Direct Loss 0.989011124844584 0 NA NA prediction 0.978022249689168 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23768600 chr16:23768600 nonsynonymous SNV 0.878 3 21 hm7G_associated_SNPs_1270 0 0 0 0 2 CHP2 chr16:23768644 5'GT 23768644 Upstream 45bp 1249 chrX 153678577 153678577 1 + G A UCEC 153678577 + 153678557 153678597 41 TCCCATGCAGGCAAGGTGGTGCTGAGGAGCTGGTACGAGAA TCCCATGCAGGCAAGGTGGTACTGAGGAGCTGGTACGAGAA Direct Loss 0.985919542917026 0 NA NA prediction 0.971839085834052 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678577 chrX:153678577 synonymous SNV . 0 21 hm7G_associated_SNPs_1272 0 0 1 0 2 FAM50A chrX:153678557 3'AG 153678557 Downstream 21bp 1250 chrX 153678577 153678577 1 + G A UCEC 153678577 + 153678557 153678597 41 TCCCATGCAGGCAAGGTGGTGCTGAGGAGCTGGTACGAGAA TCCCATGCAGGCAAGGTGGTACTGAGGAGCTGGTACGAGAA Direct Loss 0.985919542917026 0 NA NA prediction 0.971839085834052 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678577 chrX:153678577 synonymous SNV . 0 21 hm7G_associated_SNPs_1272 0 0 1 0 2 FAM50A chrX:153678667 5'GT 153678667 Upstream 91bp 1251 chr17 73015827 73015827 1 + G A rs147649597 73015827 + 73015807 73015847 41 TATCTTATTGTCGGAGTAGTGGTCCTGGGGGGCAGAATGTG TATCTTATTGTCGGAGTAGTAGTCCTGGGGGGCAGAATGTG Direct Loss 0.984345492597467 0 NA NA prediction 0.968690985194935 Functional Loss - MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73015827 chr17:73015827 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1274 0 0 1 0 2 MRPL58 chr17:73015795 3'AG 73015795 Downstream 33bp 1252 chr17 73015827 73015827 1 + G A rs147649597 73015827 + 73015807 73015847 41 TATCTTATTGTCGGAGTAGTGGTCCTGGGGGGCAGAATGTG TATCTTATTGTCGGAGTAGTAGTCCTGGGGGGCAGAATGTG Direct Loss 0.984345492597467 0 NA NA prediction 0.968690985194935 Functional Loss - MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73015827 chr17:73015827 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1274 0 0 1 0 2 MRPL58 chr17:73015854 5'GT 73015854 Upstream 28bp 1253 chr2 174229648 174229648 1 + G A ACC 174229648 + 174229628 174229668 41 TCCCTTGACGCTCTACCCATGGAGGAGGAGGAGGAAGAGGA TCCCTTGACGCTCTACCCATAGAGGAGGAGGAGGAAGAGGA Direct Loss 0.98428936698935 0 NA NA prediction 0.9685787339787 Functional Loss - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174229648 chr2:174229648 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_1275 0 0 1 0 1 CDCA7 chr2:174229717 5'GT 174229717 Upstream 70bp 1254 chr2 7023635 7023635 1 + G A SKCM 7023635 + 7023615 7023655 41 ATCGTGAGCAATGGAAGCCTGATCCGGGAGAGGTGGTTCCA ATCGTGAGCAATGGAAGCCTAATCCGGGAGAGGTGGTTCCA Direct Loss 0.984266481329239 0 NA NA prediction 0.968532962658478 Functional Loss - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7023635 chr2:7023635 synonymous SNV . 0 21 hm7G_associated_SNPs_1276 0 0 0 0 1 RSAD2 chr2:7023663 5'GT 7023663 Upstream 29bp 1255 chr1 26801102 26801102 1 + G C CESC 26801102 + 26801082 26801122 41 AAGGGAAAAAGGGAAAAGCTGATGCTGGCAAGGAGGGGAAT AAGGGAAAAAGGGAAAAGCTCATGCTGGCAAGGAGGGGAAT Direct Loss 0.984071933110586 0 NA NA prediction 0.968143866221171 Functional Loss - HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26801102 chr1:26801102 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1277 0 0 1 0 2 HMGN2 chr1:26801063 3'AG 26801063 Downstream 40bp 1256 chr1 26801102 26801102 1 + G C CESC 26801102 + 26801082 26801122 41 AAGGGAAAAAGGGAAAAGCTGATGCTGGCAAGGAGGGGAAT AAGGGAAAAAGGGAAAAGCTCATGCTGGCAAGGAGGGGAAT Direct Loss 0.984071933110586 0 NA NA prediction 0.968143866221171 Functional Loss - HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26801102 chr1:26801102 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1277 0 0 1 0 2 HMGN2 chr1:26801158 5'GT 26801158 Upstream 57bp 1257 chr12 56511287 56511287 1 + G T UCEC 56511287 + 56511267 56511307 41 CTGAAGCGCAAAAGAAGAAAGATGAGGCAGAGGTCCAAGTA CTGAAGCGCAAAAGAAGAAATATGAGGCAGAGGTCCAAGTA Direct Loss 0.98373897415119 0 NA NA prediction 0.96747794830238 Functional Loss - RPL41 ENSG00000229117 CDS Human protein_coding chr12:56511287 chr12:56511287 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1281 0 0 1 0 1 RPL41 chr12:56511266 3'AG 56511266 Downstream 22bp 1258 chr15 74180017 74180017 1 + G A UCEC 74180017 + 74179997 74180037 41 GTGCTGGTGGCCTACAGCATGCTGCAGATGGTGCGGGAGCA GTGCTGGTGGCCTACAGCATACTGCAGATGGTGCGGGAGCA Direct Loss 0.983603196365421 0 NA NA prediction 0.967206392730843 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74180017 chr15:74180017 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_1283 0 0 0 0 2 TBC1D21 chr15:74179961 3'AG 74179961 Downstream 57bp 1259 chr15 74180017 74180017 1 + G A UCEC 74180017 + 74179997 74180037 41 GTGCTGGTGGCCTACAGCATGCTGCAGATGGTGCGGGAGCA GTGCTGGTGGCCTACAGCATACTGCAGATGGTGCGGGAGCA Direct Loss 0.983603196365421 0 NA NA prediction 0.967206392730843 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74180017 chr15:74180017 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_1283 0 0 0 0 2 TBC1D21 chr15:74180077 5'GT 74180077 Upstream 61bp 1260 chr20 2320589 2320589 1 + G T LUAD 2320589 + 2320569 2320609 41 CCGGTGAGGGACTGCGTGCTGATGGTGGAGGGAAGCGGCCT CCGGTGAGGGACTGCGTGCTTATGGTGGAGGGAAGCGGCCT Direct Loss 0.983384607896503 0 NA NA prediction 0.966769215793006 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2320589 chr20:2320589 synonymous SNV . 0 21 hm7G_associated_SNPs_1284 0 0 0 0 2 TGM3 chr20:2320500 3'AG 2320500 Downstream 90bp 1261 chr20 2320589 2320589 1 + G T LUAD 2320589 + 2320569 2320609 41 CCGGTGAGGGACTGCGTGCTGATGGTGGAGGGAAGCGGCCT CCGGTGAGGGACTGCGTGCTTATGGTGGAGGGAAGCGGCCT Direct Loss 0.983384607896503 0 NA NA prediction 0.966769215793006 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2320589 chr20:2320589 synonymous SNV . 0 21 hm7G_associated_SNPs_1284 0 0 0 0 2 TGM3 chr20:2320633 5'GT 2320633 Upstream 45bp 1262 chr9 135464654 135464654 1 + G T SARC 135464654 + 135464634 135464674 41 ACGGCCGTCGGGTTGGAGCTGCTGGCGGAGGCAGGCAATTA ACGGCCGTCGGGTTGGAGCTTCTGGCGGAGGCAGGCAATTA Direct Loss 0.983002295552293 0 NA NA prediction 0.966004591104586 Functional Loss - BARHL1 ENSG00000125492 CDS Human protein_coding chr9:135464654 chr9:135464654 synonymous SNV . 0 21 hm7G_associated_SNPs_1287 0 0 0 0 1 BARHL1 chr9:135464615 3'AG 135464615 Downstream 40bp 1263 chr7 55493015 55493015 1 + G T SARC 55493015 + 55492995 55493035 41 GTGATTTGGCAGCGAGGTTTGCTGCGGAAGGGCTACGGGAT GTGATTTGGCAGCGAGGTTTTCTGCGGAAGGGCTACGGGAT Direct Loss 0.982730142875629 0 NA NA prediction 0.965460285751259 Functional Loss - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55493015 chr7:55493015 nonsynonymous SNV 0.634 4 21 hm7G_associated_SNPs_1291 0 0 1 0 1 LANCL2 chr7:55492947 3'AG 55492947 Downstream 69bp 1264 chr12 6879342 6879342 1 + G T COAD 6879342 + 6879322 6879362 41 GATGAGGAAGAAGAAGAAGAGGATGATGAAGGGCCCGCGCT GATGAGGAAGAAGAAGAAGATGATGATGAAGGGCCCGCGCT Direct Loss 0.982483114064921 0 NA NA prediction 0.964966228129841 Functional Loss - PTMS ENSG00000159335 CDS Human protein_coding chr12:6879342 chr12:6879342 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_1294 0 0 1 1 2 PTMS chr12:6879323 3'AG 6879323 Downstream 20bp 1265 chr12 6879342 6879342 1 + G T COAD 6879342 + 6879322 6879362 41 GATGAGGAAGAAGAAGAAGAGGATGATGAAGGGCCCGCGCT GATGAGGAAGAAGAAGAAGATGATGATGAAGGGCCCGCGCT Direct Loss 0.982483114064921 0 NA NA prediction 0.964966228129841 Functional Loss - PTMS ENSG00000159335 CDS Human protein_coding chr12:6879342 chr12:6879342 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_1294 0 0 1 1 2 PTMS chr12:6879384 5'GT 6879384 Upstream 43bp 1266 chr4 190878601 190878601 1 + G A SKCM 190878601 + 190878581 190878621 41 GCTGCTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCA GCTGCTTTATTAGATGCAATAAAGCAGGGGACATAGAAGCA Direct Loss 0.982426277444505 0 NA NA prediction 0.964852554889011 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878601 chr4:190878601 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_1295 0 0 0 0 2 FRG1 chr4:190878553 3'AG 190878553 Downstream 49bp 1267 chr4 190878601 190878601 1 + G A SKCM 190878601 + 190878581 190878621 41 GCTGCTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCA GCTGCTTTATTAGATGCAATAAAGCAGGGGACATAGAAGCA Direct Loss 0.982426277444505 0 NA NA prediction 0.964852554889011 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878601 chr4:190878601 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_1295 0 0 0 0 2 FRG1 chr4:190878657 5'GT 190878657 Upstream 57bp 1268 chrX 118377142 118377142 1 + G A SKCM 118377142 + 118377122 118377162 41 CATCACGTGGGCAAACTGCTGAAGGAGGGGGAGGAGCCCAC CATCACGTGGGCAAACTGCTAAAGGAGGGGGAGGAGCCCAC Direct Loss 0.982291047131158 0 NA NA prediction 0.964582094262315 Functional Loss - PGRMC1 ENSG00000101856 CDS Human protein_coding chrX:118377142 chrX:118377142 synonymous SNV . 0 21 hm7G_associated_SNPs_1296 0 0 1 0 1 PGRMC1 chrX:118377114 3'AG 118377114 Downstream 29bp 1269 chr4 190878596 190878596 1 + G A COAD 190878596 + 190878576 190878616 41 AAATAGCTGCTTTATTAGATGCAATGAAGCAGGGGACATAG AAATAGCTGCTTTATTAGATACAATGAAGCAGGGGACATAG Direct Loss 0.981790315502797 0 NA NA prediction 0.963580631005593 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878596 chr4:190878596 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_1297 0 0 0 0 2 FRG1 chr4:190878553 3'AG 190878553 Downstream 44bp 1270 chr4 190878596 190878596 1 + G A COAD 190878596 + 190878576 190878616 41 AAATAGCTGCTTTATTAGATGCAATGAAGCAGGGGACATAG AAATAGCTGCTTTATTAGATACAATGAAGCAGGGGACATAG Direct Loss 0.981790315502797 0 NA NA prediction 0.963580631005593 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878596 chr4:190878596 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_1297 0 0 0 0 2 FRG1 chr4:190878657 5'GT 190878657 Upstream 62bp 1271 chr6 109764033 109764033 1 + G C rs527587528 109764033 + 109764013 109764053 41 GAAGACCTGGGCTGCTGCCTGCTGAAGGAGTGGACAGGGCT GAAGACCTGGGCTGCTGCCTCCTGAAGGAGTGGACAGGGCT Direct Loss 0.981632058679898 0 NA NA prediction 0.963264117359795 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109764033 chr6:109764033 synonymous SNV . 0 21 hm7G_associated_SNPs_1298 0 0 0 0 2 SMPD2 chr6:109763955 3'AG 109763955 Downstream 79bp 1272 chr6 109764033 109764033 1 + G C rs527587528 109764033 + 109764013 109764053 41 GAAGACCTGGGCTGCTGCCTGCTGAAGGAGTGGACAGGGCT GAAGACCTGGGCTGCTGCCTCCTGAAGGAGTGGACAGGGCT Direct Loss 0.981632058679898 0 NA NA prediction 0.963264117359795 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109764033 chr6:109764033 synonymous SNV . 0 21 hm7G_associated_SNPs_1298 0 0 0 0 2 SMPD2 chr6:109764087 5'GT 109764087 Upstream 55bp 1273 chr20 16730565 16730565 1 + G T LUAD 16730565 + 16730545 16730585 41 TAGGTTTATGGTGATGGCCAGGACGAGATGGGAGTCGTGGG TAGGTTTATGGTGATGGCCATGACGAGATGGGAGTCGTGGG Direct Loss 0.981581961172128 0 NA NA prediction 0.963163922344257 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730565 chr20:16730565 nonsynonymous SNV 0.970 0 21 hm7G_associated_SNPs_1299 0 0 0 0 2 OTOR chr20:16730548 3'AG 16730548 Downstream 18bp 1274 chr20 16730565 16730565 1 + G T LUAD 16730565 + 16730545 16730585 41 TAGGTTTATGGTGATGGCCAGGACGAGATGGGAGTCGTGGG TAGGTTTATGGTGATGGCCATGACGAGATGGGAGTCGTGGG Direct Loss 0.981581961172128 0 NA NA prediction 0.963163922344257 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730565 chr20:16730565 nonsynonymous SNV 0.970 0 21 hm7G_associated_SNPs_1299 0 0 0 0 2 OTOR chr20:16730655 5'GT 16730655 Upstream 91bp 1275 chr5 115238605 115238605 1 + G A PAAD 115238605 + 115238585 115238625 41 CACAATATTCTTGCAGAAATGGTGATGGGGGGAATGGTATT CACAATATTCTTGCAGAAATAGTGATGGGGGGAATGGTATT Direct Loss 0.981524941566272 0 NA NA prediction 0.963049883132544 Functional Loss - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115238605 chr5:115238605 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1300 0 0 1 0 2 AP3S1 chr5:115238582 3'AG 115238582 Downstream 24bp 1276 chr5 115238605 115238605 1 + G A PAAD 115238605 + 115238585 115238625 41 CACAATATTCTTGCAGAAATGGTGATGGGGGGAATGGTATT CACAATATTCTTGCAGAAATAGTGATGGGGGGAATGGTATT Direct Loss 0.981524941566272 0 NA NA prediction 0.963049883132544 Functional Loss - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115238605 chr5:115238605 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1300 0 0 1 0 2 AP3S1 chr5:115238689 5'GT 115238689 Upstream 85bp 1277 chr9 140446562 140446562 1 + G A BLCA 140446562 + 140446542 140446582 41 CCTGGCCGCAGCGGCGCGCTGCCTGGTCCGGGGTGCGGACC CCTGGCCGCAGCGGCGCGCTACCTGGTCCGGGGTGCGGACC Direct Loss 0.981423393002634 0 NA NA prediction 0.962846786005268 Functional Loss - MRPL41 ENSG00000182154 CDS Human protein_coding chr9:140446562 chr9:140446562 nonsynonymous SNV 0.002 1 21 hm7G_associated_SNPs_1301 0 0 1 0 1 MRPL41 chr9:140446526 3'AG 140446526 Downstream 37bp 1278 chr2 98264496 98264496 1 + G A LGG 98264496 + 98264476 98264516 41 AGCGTCGTCTGGTTTTGGCTGCACAAAGGCGAGGCCCAGCG AGCGTCGTCTGGTTTTGGCTACACAAAGGCGAGGCCCAGCG Direct Loss 0.981289847699139 0 NA NA prediction 0.962579695398278 Functional Loss - COX5B ENSG00000135940 CDS Human protein_coding chr2:98264496 chr2:98264496 synonymous SNV . 0 21 hm7G_associated_SNPs_1302 0 0 1 0 1 COX5B chr2:98264459 3'AG 98264459 Downstream 38bp 1279 chr13 113783880 113783880 1 + G A UCEC 113783880 + 113783860 113783900 41 AGAGTGCATGGAAGAGACCTGCTCATACGAAGAGGCCCGCG AGAGTGCATGGAAGAGACCTACTCATACGAAGAGGCCCGCG Direct Loss 0.980891274093589 0 NA NA prediction 0.961782548187178 Functional Loss - F10 ENSG00000126218 CDS Human protein_coding chr13:113783880 chr13:113783880 nonsynonymous SNV 0.002 5 21 hm7G_associated_SNPs_1303 0 0 1 0 1 F10 chr13:113783926 5'GT 113783926 Upstream 47bp 1280 chr3 136728989 136728989 1 + G A UCEC 136728989 + 136728969 136729009 41 ACCCCAGAAGTTAATCAGCTGCAGAAGGGAGGAGGTGGATG ACCCCAGAAGTTAATCAGCTACAGAAGGGAGGAGGTGGATG Direct Loss 0.980818864608095 0 NA NA prediction 0.96163772921619 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136728989 chr3:136728989 nonsynonymous SNV 0.954 0 21 hm7G_associated_SNPs_1305 0 0 0 0 1 IL20RB chr3:136728955 3'AG 136728955 Downstream 35bp 1281 chr12 9161635 9161635 1 + G A SKCM 9161635 + 9161615 9161655 41 TCTGAGGAACAATTCTGGCTGGAGGTGGGAAGATGGATCAC TCTGAGGAACAATTCTGGCTAGAGGTGGGAAGATGGATCAC Direct Loss 0.980514556447364 0 NA NA prediction 0.961029112894727 Functional Loss - KLRG1 ENSG00000139187 CDS Human protein_coding chr12:9161635 chr12:9161635 stopgain 0.911 1 21 hm7G_associated_SNPs_1307 0 0 1 0 2 KLRG1 chr12:9161571 3'AG 9161571 Downstream 65bp 1282 chr12 9161635 9161635 1 + G A SKCM 9161635 + 9161615 9161655 41 TCTGAGGAACAATTCTGGCTGGAGGTGGGAAGATGGATCAC TCTGAGGAACAATTCTGGCTAGAGGTGGGAAGATGGATCAC Direct Loss 0.980514556447364 0 NA NA prediction 0.961029112894727 Functional Loss - KLRG1 ENSG00000139187 CDS Human protein_coding chr12:9161635 chr12:9161635 stopgain 0.911 1 21 hm7G_associated_SNPs_1307 0 0 1 0 2 KLRG1 chr12:9161671 5'GT 9161671 Upstream 37bp 1283 chrX 119007305 119007305 1 + G C rs140064980 119007305 + 119007285 119007325 41 TTTGGGTATCACTGGAGTCTGATGGAAAGAGATAGGCGCAT TTTGGGTATCACTGGAGTCTCATGGAAAGAGATAGGCGCAT Direct Loss 0.980186396007725 0 NA NA prediction 0.960372792015449 Functional Loss - NDUFA1 ENSG00000125356 CDS Human protein_coding chrX:119007305 chrX:119007305 synonymous SNV . 0 21 hm7G_associated_SNPs_1309 1 0 1 0 2 NDUFA1 chrX:119007267 3'AG 119007267 Downstream 39bp 1284 chrX 119007305 119007305 1 + G C rs140064980 119007305 + 119007285 119007325 41 TTTGGGTATCACTGGAGTCTGATGGAAAGAGATAGGCGCAT TTTGGGTATCACTGGAGTCTCATGGAAAGAGATAGGCGCAT Direct Loss 0.980186396007725 0 NA NA prediction 0.960372792015449 Functional Loss - NDUFA1 ENSG00000125356 CDS Human protein_coding chrX:119007305 chrX:119007305 synonymous SNV . 0 21 hm7G_associated_SNPs_1309 1 0 1 0 2 NDUFA1 chrX:119007356 5'GT 119007356 Upstream 52bp 1285 chr19 16296498 16296498 1 + G T UCEC 16296498 + 16296478 16296518 41 GCAATGGGAACGAGCAAAAAGAACGAGGAGGAGAAGCGGCG GCAATGGGAACGAGCAAAAATAACGAGGAGGAGAAGCGGCG Direct Loss 0.980146722433539 0 NA NA prediction 0.960293444867078 Functional Loss - FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296498 chr19:16296498 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1310 0 0 1 0 2 FAM32A chr19:16296435 3'AG 16296435 Downstream 64bp 1286 chr19 16296498 16296498 1 + G T UCEC 16296498 + 16296478 16296518 41 GCAATGGGAACGAGCAAAAAGAACGAGGAGGAGAAGCGGCG GCAATGGGAACGAGCAAAAATAACGAGGAGGAGAAGCGGCG Direct Loss 0.980146722433539 0 NA NA prediction 0.960293444867078 Functional Loss - FAM32A ENSG00000105058 CDS Human protein_coding chr19:16296498 chr19:16296498 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1310 0 0 1 0 2 FAM32A chr19:16296576 5'GT 16296576 Upstream 79bp 1287 chr12 102590466 102590466 1 - C T LUSC 102590466 - 102590446 102590486 41 CCTTCAGTGCTCAGATGTATGCTGGGAAGAGTCTACCGACC CCTTCAGTGCTCAGATGTATACTGGGAAGAGTCTACCGACC Direct Loss 0.980074069921255 0 NA NA prediction 0.96014813984251 Functional Loss - PMCH ENSG00000183395 CDS Human protein_coding chr12:102590466 chr12:102590466 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1312 0 0 0 0 1 PMCH chr12:102590479 3'AG 102590479 Downstream 14bp 1288 chr22 38870625 38870625 1 + G T SARC 38870625 + 38870605 38870645 41 TCCATCTACAACACAGTAATGAAGGTGAGGGGCTGGGTGAT TCCATCTACAACACAGTAATTAAGGTGAGGGGCTGGGTGAT Direct Loss 0.979849249975234 0 NA NA prediction 0.959698499950468 Functional Loss - KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38870625 chr22:38870625 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_1313 0 0 0 0 2 KDELR3 chr22:38870528 3'AG 38870528 Downstream 98bp 1289 chr22 38870625 38870625 1 + G T SARC 38870625 + 38870605 38870645 41 TCCATCTACAACACAGTAATGAAGGTGAGGGGCTGGGTGAT TCCATCTACAACACAGTAATTAAGGTGAGGGGCTGGGTGAT Direct Loss 0.979849249975234 0 NA NA prediction 0.959698499950468 Functional Loss - KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38870625 chr22:38870625 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_1313 0 0 0 0 2 KDELR3 chr22:38870628 5'GT 38870628 Upstream 4bp 1290 chr15 44093758 44093758 1 + G A rs77134226 44093758 + 44093738 44093778 41 ACTATCAAGAAGGAAGATCTGGAGCTAATAGTGAGTGGTAG ACTATCAAGAAGGAAGATCTAGAGCTAATAGTGAGTGGTAG Direct Loss 0.97970780635806 0 NA NA prediction 0.959415612716121 Functional Loss - HYPK ENSG00000140264;ENSG00000242028 CDS Human other chr15:44093758 chr15:44093758 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_1314 0 0 1 0 2 HYPK chr15:44093716 3'AG 44093716 Downstream 43bp 1291 chr15 44093758 44093758 1 + G A rs77134226 44093758 + 44093738 44093778 41 ACTATCAAGAAGGAAGATCTGGAGCTAATAGTGAGTGGTAG ACTATCAAGAAGGAAGATCTAGAGCTAATAGTGAGTGGTAG Direct Loss 0.97970780635806 0 NA NA prediction 0.959415612716121 Functional Loss - HYPK ENSG00000140264;ENSG00000242028 CDS Human other chr15:44093758 chr15:44093758 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_1314 0 0 1 0 2 HYPK chr15:44093767 5'GT 44093767 Upstream 10bp 1292 chr17 37822059 37822059 1 + G C LUAD 37822059 + 37822039 37822079 41 GTGCAGCGCTCGCCCTGGCTGATGATGCGGATGGGCATCCT GTGCAGCGCTCGCCCTGGCTCATGATGCGGATGGGCATCCT Direct Loss 0.979678370504883 0 NA NA prediction 0.959356741009765 Functional Loss - TCAP ENSG00000173991 CDS Human protein_coding chr17:37822059 chr17:37822059 synonymous SNV . 0 21 hm7G_associated_SNPs_1315 0 0 0 0 1 TCAP chr17:37821969 3'AG 37821969 Downstream 91bp 1293 chr19 49447646 49447646 1 + G T STAD 49447646 + 49447626 49447666 41 TGCTGGTGCCCGACCGAGCTGGTGGTGAAGGGGGAGCATAA TGCTGGTGCCCGACCGAGCTTGTGGTGAAGGGGGAGCATAA Direct Loss 0.979563218733335 0 NA NA prediction 0.95912643746667 Functional Loss - DHDH ENSG00000104808 CDS Human protein_coding chr19:49447646 chr19:49447646 synonymous SNV . 0 21 hm7G_associated_SNPs_1318 0 0 0 0 1 DHDH chr19:49447614 3'AG 49447614 Downstream 33bp 1294 chr12 110345418 110345418 1 + G T COAD 110345418 + 110345398 110345438 41 CGCTAGAAAGGATGAAAGCTGAAGAGGAGAGGAGGCAGCTG CGCTAGAAAGGATGAAAGCTTAAGAGGAGAGGAGGCAGCTG Direct Loss 0.979372897231861 0 NA NA prediction 0.958745794463723 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110345418 chr12:110345418 stopgain 0.364 1 21 hm7G_associated_SNPs_1320 0 0 1 0 2 TCHP chr12:110345331 3'AG 110345331 Downstream 88bp 1295 chr12 110345418 110345418 1 + G T COAD 110345418 + 110345398 110345438 41 CGCTAGAAAGGATGAAAGCTGAAGAGGAGAGGAGGCAGCTG CGCTAGAAAGGATGAAAGCTTAAGAGGAGAGGAGGCAGCTG Direct Loss 0.979372897231861 0 NA NA prediction 0.958745794463723 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110345418 chr12:110345418 stopgain 0.364 1 21 hm7G_associated_SNPs_1320 0 0 1 0 2 TCHP chr12:110345504 5'GT 110345504 Upstream 87bp 1296 chrX 15809081 15809081 1 + G A BLCA 15809081 + 15809061 15809101 41 AAAAAGTACAGGGCCGCCCTGAAGAAGGAGAAACGAAAGAA AAAAAGTACAGGGCCGCCCTAAAGAAGGAGAAACGAAAGAA Direct Loss 0.979339277487535 0 NA NA prediction 0.95867855497507 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15809081 chrX:15809081 synonymous SNV . 0 21 hm7G_associated_SNPs_1321 0 0 0 0 2 ZRSR2 chrX:15809057 3'AG 15809057 Downstream 25bp 1297 chrX 15809081 15809081 1 + G A BLCA 15809081 + 15809061 15809101 41 AAAAAGTACAGGGCCGCCCTGAAGAAGGAGAAACGAAAGAA AAAAAGTACAGGGCCGCCCTAAAGAAGGAGAAACGAAAGAA Direct Loss 0.979339277487535 0 NA NA prediction 0.95867855497507 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15809081 chrX:15809081 synonymous SNV . 0 21 hm7G_associated_SNPs_1321 0 0 0 0 2 ZRSR2 chrX:15809136 5'GT 15809136 Upstream 56bp 1298 chr2 207027266 207027266 1 + G A LUAD 207027266 + 207027246 207027286 41 TAGATGTGAAACCTTGGGATGATGAGACAGATATGGCGAAA TAGATGTGAAACCTTGGGATAATGAGACAGATATGGCGAAA Direct Loss 0.979237503015383 0 NA NA prediction 0.958475006030766 Functional Loss - EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207027266 chr2:207027266 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_1322 0 0 1 0 2 EEF1B2 chr2:207027213 3'AG 207027213 Downstream 54bp 1299 chr2 207027266 207027266 1 + G A LUAD 207027266 + 207027246 207027286 41 TAGATGTGAAACCTTGGGATGATGAGACAGATATGGCGAAA TAGATGTGAAACCTTGGGATAATGAGACAGATATGGCGAAA Direct Loss 0.979237503015383 0 NA NA prediction 0.958475006030766 Functional Loss - EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207027266 chr2:207027266 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_1322 0 0 1 0 2 EEF1B2 chr2:207027338 5'GT 207027338 Upstream 73bp 1300 chr11 65417944 65417944 1 + G A UCEC 65417944 + 65417924 65417964 41 AGGAAGCTGCAGGAGGACCTGCAGAAGGTGAGGGGTGGGCT AGGAAGCTGCAGGAGGACCTACAGAAGGTGAGGGGTGGGCT Direct Loss 0.979008006435915 0 NA NA prediction 0.95801601287183 Functional Loss - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65417944 chr11:65417944 synonymous SNV . 0 21 hm7G_associated_SNPs_1324 0 0 1 0 2 SIPA1 chr11:65417872 3'AG 65417872 Downstream 73bp 1301 chr11 65417944 65417944 1 + G A UCEC 65417944 + 65417924 65417964 41 AGGAAGCTGCAGGAGGACCTGCAGAAGGTGAGGGGTGGGCT AGGAAGCTGCAGGAGGACCTACAGAAGGTGAGGGGTGGGCT Direct Loss 0.979008006435915 0 NA NA prediction 0.95801601287183 Functional Loss - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65417944 chr11:65417944 synonymous SNV . 0 21 hm7G_associated_SNPs_1324 0 0 1 0 2 SIPA1 chr11:65417950 5'GT 65417950 Upstream 7bp 1302 chr1 46033762 46033762 1 + G A rs146714966 46033762 + 46033742 46033782 41 GCACTGGTGGCTAAGGGGCTGGTGCAGGCGCTGGGCCTGTC GCACTGGTGGCTAAGGGGCTAGTGCAGGCGCTGGGCCTGTC Direct Loss 0.97900137680805 0 NA NA prediction 0.958002753616099 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033762 chr1:46033762 synonymous SNV . 0 21 hm7G_associated_SNPs_1325 0 0 1 0 1 AKR1A1 chr1:46033849 5'GT 46033849 Upstream 88bp 1303 chr2 232576627 232576627 1 + G C CESC 232576627 + 232576607 232576647 41 AAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAA AAAATGGGGAGCAGGAGGCTCACAATGAGGTAGACGAAGAA Direct Loss 0.978995382426443 0 NA NA prediction 0.957990764852886 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576627 chr2:232576627 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1326 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 31bp 1304 chr2 232576627 232576627 1 + G C CESC 232576627 + 232576607 232576647 41 AAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAA AAAATGGGGAGCAGGAGGCTCACAATGAGGTAGACGAAGAA Direct Loss 0.978995382426443 0 NA NA prediction 0.957990764852886 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576627 chr2:232576627 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1326 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 28bp 1305 chr2 232576627 232576627 1 + G C CESC 232576627 + 232576607 232576647 41 AAAATGGGGAGCAGGAGGCTGACAATGAGGTAGACGAAGAA AAAATGGGGAGCAGGAGGCTCACAATGAGGTAGACGAAGAA Direct Loss 0.978995382426443 0 NA NA prediction 0.957990764852886 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576627 chr2:232576627 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1326 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 67bp 1306 chr3 100148647 100148647 1 + G T LUSC 100148647 + 100148627 100148667 41 CAGCTTCTGGGGCCACAGCTGGAGAGAGGAGGATCAGAGAG CAGCTTCTGGGGCCACAGCTTGAGAGAGGAGGATCAGAGAG Direct Loss 0.978790861695431 0 NA NA prediction 0.957581723390861 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148647 chr3:100148647 nonsynonymous SNV 0.883 0 21 hm7G_associated_SNPs_1327 0 0 1 0 1 LNP1 chr3:100148729 5'GT 100148729 Upstream 83bp 1307 chr9 100773606 100773606 1 + G A COAD 100773606 + 100773586 100773626 41 ATGGTGAAGAAGAGGAGTTTGATGAAGAAGATGATGAAGAT ATGGTGAAGAAGAGGAGTTTAATGAAGAAGATGATGAAGAT Direct Loss 0.97878451530037 0 NA NA prediction 0.95756903060074 Functional Loss - ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773606 chr9:100773606 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_1328 0 0 1 0 2 ANP32B chr9:100773553 3'AG 100773553 Downstream 54bp 1308 chr9 100773606 100773606 1 + G A COAD 100773606 + 100773586 100773626 41 ATGGTGAAGAAGAGGAGTTTGATGAAGAAGATGATGAAGAT ATGGTGAAGAAGAGGAGTTTAATGAAGAAGATGATGAAGAT Direct Loss 0.97878451530037 0 NA NA prediction 0.95756903060074 Functional Loss - ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773606 chr9:100773606 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_1328 0 0 1 0 2 ANP32B chr9:100773671 5'GT 100773671 Upstream 66bp 1309 chr1 24082841 24082841 1 + G A COAD 24082841 + 24082821 24082861 41 GGAGGAGGCAGGAAAAGTTTGGAACGGGAGGAGCAGCTGTC GGAGGAGGCAGGAAAAGTTTAGAACGGGAGGAGCAGCTGTC Direct Loss 0.97873217833788 0 NA NA prediction 0.957464356675759 Functional Loss - ELOA ENSG00000011007 CDS Human protein_coding chr1:24082841 chr1:24082841 nonsynonymous SNV 0.989 4 21 hm7G_associated_SNPs_1329 0 0 1 0 2 ELOA chr1:24082764 3'AG 24082764 Downstream 78bp 1310 chr1 24082841 24082841 1 + G A COAD 24082841 + 24082821 24082861 41 GGAGGAGGCAGGAAAAGTTTGGAACGGGAGGAGCAGCTGTC GGAGGAGGCAGGAAAAGTTTAGAACGGGAGGAGCAGCTGTC Direct Loss 0.97873217833788 0 NA NA prediction 0.957464356675759 Functional Loss - ELOA ENSG00000011007 CDS Human protein_coding chr1:24082841 chr1:24082841 nonsynonymous SNV 0.989 4 21 hm7G_associated_SNPs_1329 0 0 1 0 2 ELOA chr1:24082875 5'GT 24082875 Upstream 35bp 1311 chr19 13888907 13888907 1 + G A BRCA 13888907 + 13888887 13888927 41 AAGAAGATCGAACATGACGTGGTGATGAAAGCCAGCAGCAG AAGAAGATCGAACATGACGTAGTGATGAAAGCCAGCAGCAG Direct Loss 0.978641618386988 0 NA NA prediction 0.957283236773976 Functional Loss - C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13888907 chr19:13888907 synonymous SNV . 0 21 hm7G_associated_SNPs_1330 0 0 1 0 1 C19orf53 chr19:13888866 3'AG 13888866 Downstream 42bp 1312 chr4 110743587 110743587 1 + G T LUAD 110743587 + 110743567 110743607 41 AAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGA AAGGACCTCCAAGAGGTGGTTGCAGGGGAGGCCGAGGAGGA Direct Loss 0.978491107747942 0 NA NA prediction 0.956982215495884 Functional Loss - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110743587 chr4:110743587 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1334 0 0 1 0 3 GAR1 chr4:110743503 3'AG 110743503 Downstream 85bp 1313 chr4 110743587 110743587 1 + G T LUAD 110743587 + 110743567 110743607 41 AAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGA AAGGACCTCCAAGAGGTGGTTGCAGGGGAGGCCGAGGAGGA Direct Loss 0.978491107747942 0 NA NA prediction 0.956982215495884 Functional Loss - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110743587 chr4:110743587 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1334 0 0 1 0 3 GAR1 chr4:110743620 5'GT 110743620 Upstream 34bp 1314 chr4 110743587 110743587 1 + G T LUAD 110743587 + 110743567 110743607 41 AAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGA AAGGACCTCCAAGAGGTGGTTGCAGGGGAGGCCGAGGAGGA Direct Loss 0.978491107747942 0 NA NA prediction 0.956982215495884 Functional Loss - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110743587 chr4:110743587 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1334 0 0 1 0 3 GAR1 chr4:110743644 5'GT 110743644 Upstream 58bp 1315 chr13 41639317 41639317 1 + G A CESC 41639317 + 41639297 41639337 41 TAGATTAAACAGAAAAGCCTGGATAAGGCAAAGGAAGAAGA TAGATTAAACAGAAAAGCCTAGATAAGGCAAAGGAAGAAGA Direct Loss 0.978069379793263 0 NA NA prediction 0.956138759586525 Functional Loss - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41639317 chr13:41639317 synonymous SNV . 0 21 hm7G_associated_SNPs_1337 0 0 1 0 1 WBP4 chr13:41639300 3'AG 41639300 Downstream 18bp 1316 chr20 4680221 4680221 1 + G A LUAD 4680221 + 4680201 4680241 41 TGGCTGGTGCTGCAGCAGCTGGGGCAGTGGTGGGGGGCCTT TGGCTGGTGCTGCAGCAGCTAGGGCAGTGGTGGGGGGCCTT Direct Loss 0.977818544059878 0 NA NA prediction 0.955637088119755 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680221 chr20:4680221 nonsynonymous SNV 0.814 4 21 hm7G_associated_SNPs_1338 0 0 1 0 1 PRNP chr20:4680216 3'AG 4680216 Downstream 6bp 1317 chr12 56511283 56511283 1 + G A CESC 56511283 + 56511263 56511303 41 CAGGCTGAAGCGCAAAAGAAGAAAGATGAGGCAGAGGTCCA CAGGCTGAAGCGCAAAAGAAAAAAGATGAGGCAGAGGTCCA Direct Loss 0.97774275946507 0 NA NA prediction 0.95548551893014 Functional Loss - RPL41 ENSG00000229117 CDS Human protein_coding chr12:56511283 chr12:56511283 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1340 0 0 1 0 1 RPL41 chr12:56511266 3'AG 56511266 Downstream 18bp 1318 chr1 163044127 163044127 1 + G A GBM 163044127 + 163044107 163044147 41 TCAGGTGAACCTGGATTCTTGCACCAGGGAAGAGACAAGCC TCAGGTGAACCTGGATTCTTACACCAGGGAAGAGACAAGCC Direct Loss 0.977727193824832 0 NA NA prediction 0.955454387649664 Functional Loss - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163044127 chr1:163044127 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_1341 0 0 0 0 1 RGS4 chr1:163044111 3'AG 163044111 Downstream 17bp 1319 chr12 2968732 2968732 1 + G A LUSC 2968732 + 2968712 2968752 41 CCTCCTTGATAGTCTGAACTGGAAGCAAAGGAGAAAACCCT CCTCCTTGATAGTCTGAACTAGAAGCAAAGGAGAAAACCCT Direct Loss 0.977603192570576 0 NA NA prediction 0.955206385141151 Functional Loss - FOXM1 ENSG00000111206 CDS Human protein_coding chr12:2968732 chr12:2968732 nonsynonymous SNV 0.876 3 21 hm7G_associated_SNPs_1344 0 0 1 0 1 FOXM1 chr12:2968700 3'AG 2968700 Downstream 33bp 1320 chr19 10221394 10221394 1 + G A HNSC 10221394 + 10221374 10221414 41 AAGAAGAGCCTGGAGGGCATGAAGAAGGCACGGGTCGGGGG AAGAAGAGCCTGGAGGGCATAAAGAAGGCACGGGTCGGGGG Direct Loss 0.977477770110596 0 NA NA prediction 0.954955540221192 Functional Loss - PPAN;PPAN-P2RY11 ENSG00000130810;ENSG00000243207 CDS Human other chr19:10221394 chr19:10221394 nonsynonymous SNV 0.859 0 21 hm7G_associated_SNPs_1345 0 0 1 0 1 PPAN;PPAN-P2RY11 chr19:10221373 3'AG 10221373 Downstream 22bp 1321 chr1 38027327 38027327 1 + G A LIHC 38027327 + 38027307 38027347 41 GAGCAGGGGAAGTCAGACATGGAGAGGAAAGTGAGTGGGGT GAGCAGGGGAAGTCAGACATAGAGAGGAAAGTGAGTGGGGT Direct Loss 0.977427329020159 0 NA NA prediction 0.954854658040317 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027327 chr1:38027327 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1347 0 0 0 0 1 DNALI1 chr1:38027336 5'GT 38027336 Upstream 10bp 1322 chr9 36211652 36211652 1 + G A BLCA 36211652 + 36211632 36211672 41 ACGAGTCGTCCCCAGGCACTGAGTGGGAACGGGTGGCCCGG ACGAGTCGTCCCCAGGCACTAAGTGGGAACGGGTGGCCCGG Direct Loss 0.977375368987927 0 NA NA prediction 0.954750737975855 Functional Loss - CLTA ENSG00000122705 CDS Human other chr9:36211652 chr9:36211652 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1348 0 0 1 0 2 CLTA chr9:36211600 3'AG 36211600 Downstream 53bp 1323 chr9 36211652 36211652 1 + G A BLCA 36211652 + 36211632 36211672 41 ACGAGTCGTCCCCAGGCACTGAGTGGGAACGGGTGGCCCGG ACGAGTCGTCCCCAGGCACTAAGTGGGAACGGGTGGCCCGG Direct Loss 0.977375368987927 0 NA NA prediction 0.954750737975855 Functional Loss - CLTA ENSG00000122705 CDS Human protein_coding chr9:36211652 chr9:36211652 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1348 0 0 1 0 2 CLTA chr9:36211605 3'AG 36211605 Downstream 48bp 1324 chr17 46058604 46058604 1 + G C BLCA 46058604 + 46058584 46058624 41 CTGGCTTTGAAGAAAGAGCTGATGGTGCAGAAGCAGCAGGA CTGGCTTTGAAGAAAGAGCTCATGGTGCAGAAGCAGCAGGA Direct Loss 0.977185751185567 0 NA NA prediction 0.954371502371133 Functional Loss - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46058604 chr17:46058604 synonymous SNV . 0 21 hm7G_associated_SNPs_1350 0 0 0 0 2 CDK5RAP3 chr17:46058529 3'AG 46058529 Downstream 76bp 1325 chr17 46058604 46058604 1 + G C BLCA 46058604 + 46058584 46058624 41 CTGGCTTTGAAGAAAGAGCTGATGGTGCAGAAGCAGCAGGA CTGGCTTTGAAGAAAGAGCTCATGGTGCAGAAGCAGCAGGA Direct Loss 0.977185751185567 0 NA NA prediction 0.954371502371133 Functional Loss - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46058604 chr17:46058604 synonymous SNV . 0 21 hm7G_associated_SNPs_1350 0 0 0 0 2 CDK5RAP3 chr17:46058700 5'GT 46058700 Upstream 97bp 1326 chr5 72800195 72800195 1 + G C LUAD 72800195 + 72800175 72800215 41 TGGATGGAAAAGCACCACTTGCTACTGGAGAGGATGATGAT TGGATGGAAAAGCACCACTTCCTACTGGAGAGGATGATGAT Direct Loss 0.977164906305202 0 NA NA prediction 0.954329812610404 Functional Loss - BTF3 ENSG00000145741 CDS Human protein_coding chr5:72800195 chr5:72800195 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1352 0 0 1 1 2 BTF3 chr5:72800172 3'AG 72800172 Downstream 24bp 1327 chr5 72800195 72800195 1 + G C LUAD 72800195 + 72800175 72800215 41 TGGATGGAAAAGCACCACTTGCTACTGGAGAGGATGATGAT TGGATGGAAAAGCACCACTTCCTACTGGAGAGGATGATGAT Direct Loss 0.977164906305202 0 NA NA prediction 0.954329812610404 Functional Loss - BTF3 ENSG00000145741 CDS Human protein_coding chr5:72800195 chr5:72800195 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1352 0 0 1 1 2 BTF3 chr5:72800228 5'GT 72800228 Upstream 34bp 1328 chr15 38776458 38776458 1 + G T KIRC 38776458 + 38776438 38776478 41 AAATGTTTCTTCACACAGGTGCTGATGGGAAGGGTGCCTGA AAATGTTTCTTCACACAGGTTCTGATGGGAAGGGTGCCTGA Direct Loss 0.977155497664816 0 NA NA prediction 0.954310995329633 Functional Loss - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38776458 chr15:38776458 synonymous SNV . 0 21 hm7G_associated_SNPs_1353 0 0 1 0 1 FAM98B chr15:38776456 3'AG 38776456 Downstream 3bp 1329 chr16 69374142 69374142 1 + G A HNSC 69374142 + 69374122 69374162 41 AATATTTCCGGGGACAAGCTGGTGTCGCTGGGGACCTGCTT AATATTTCCGGGGACAAGCTAGTGTCGCTGGGGACCTGCTT Direct Loss 0.977080337164743 0 NA NA prediction 0.954160674329487 Functional Loss - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69374142 chr16:69374142 synonymous SNV . 0 21 hm7G_associated_SNPs_1354 0 0 1 0 2 NIP7 chr16:69374097 3'AG 69374097 Downstream 46bp 1330 chr16 69374142 69374142 1 + G A HNSC 69374142 + 69374122 69374162 41 AATATTTCCGGGGACAAGCTGGTGTCGCTGGGGACCTGCTT AATATTTCCGGGGACAAGCTAGTGTCGCTGGGGACCTGCTT Direct Loss 0.977080337164743 0 NA NA prediction 0.954160674329487 Functional Loss - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69374142 chr16:69374142 synonymous SNV . 0 21 hm7G_associated_SNPs_1354 0 0 1 0 2 NIP7 chr16:69374235 5'GT 69374235 Upstream 94bp 1331 chr1 150960593 150960593 1 + G A rs149528939 150960593 + 150960573 150960613 41 ATCAGTACCAGCGGAGCACTGGGCAAGAGCTGGAGGAGGCT ATCAGTACCAGCGGAGCACTAGGCAAGAGCTGGAGGAGGCT Direct Loss 0.977075178825888 0 NA NA prediction 0.954150357651775 Functional Loss - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150960593 chr1:150960593 nonsynonymous SNV 0.007 3 21 hm7G_associated_SNPs_1355 0 0 0 0 1 ANXA9 chr1:150960662 5'GT 150960662 Upstream 70bp 1332 chr20 10036182 10036182 1 + G A SKCM 10036182 + 10036162 10036202 41 GAAGCCACAACAGCAGAGCTGATCAGGAAGAGGGAACTACG GAAGCCACAACAGCAGAGCTAATCAGGAAGAGGGAACTACG Direct Loss 0.976990656796901 0 NA NA prediction 0.953981313593802 Functional Loss - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10036182 chr20:10036182 synonymous SNV . 0 21 hm7G_associated_SNPs_1356 0 0 0 0 1 ANKEF1 chr20:10036150 3'AG 10036150 Downstream 33bp 1333 chr5 179153701 179153701 1 + G A SARC 179153701 + 179153681 179153721 41 AAGAGAAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACT AAGAGAAACAGAAAAGTGATACTGAAGAAGATGGTGGCACT Direct Loss 0.976974938630697 0 NA NA prediction 0.953949877261393 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179153701 chr5:179153701 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1357 0 0 1 0 2 CANX chr5:179153681 3'AG 179153681 Downstream 21bp 1334 chr5 179153701 179153701 1 + G A SARC 179153701 + 179153681 179153721 41 AAGAGAAACAGAAAAGTGATGCTGAAGAAGATGGTGGCACT AAGAGAAACAGAAAAGTGATACTGAAGAAGATGGTGGCACT Direct Loss 0.976974938630697 0 NA NA prediction 0.953949877261393 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179153701 chr5:179153701 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1357 0 0 1 0 2 CANX chr5:179153760 5'GT 179153760 Upstream 60bp 1335 chr2 71190301 71190301 1 + G C BLCA 71190301 + 71190281 71190321 41 GGATATTGCAGGTCTCTGCTGCTAGAGAGGAGGTGCCTGGG GGATATTGCAGGTCTCTGCTCCTAGAGAGGAGGTGCCTGGG Direct Loss 0.976832478899911 0 NA NA prediction 0.953664957799823 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190301 chr2:71190301 nonsynonymous SNV 0.958 4 21 hm7G_associated_SNPs_1358 0 0 0 6 1 ATP6V1B1 chr2:71190292 3'AG 71190292 Downstream 10bp 1336 chr21 45563123 45563123 1 + G C LUAD 45563123 + 45563103 45563143 41 CCTGTCCTCGCGGCCAAGGTGCTCAGAGGCGTCGAGGTGAC CCTGTCCTCGCGGCCAAGGTCCTCAGAGGCGTCGAGGTGAC Direct Loss 0.976813874798531 0 NA NA prediction 0.953627749597062 Functional Loss - C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45563123 chr21:45563123 synonymous SNV . 0 21 hm7G_associated_SNPs_1359 0 0 1 0 1 C21orf33 chr21:45563087 3'AG 45563087 Downstream 37bp 1337 chr12 102590817 102590817 1 - C A UCEC 102590817 - 102590797 102590837 41 AGAATACTGAATCAACACAAGAAAAGAGAGAAATTGGGGAT AGAATACTGAATCAACACAATAAAAGAGAGAAATTGGGGAT Direct Loss 0.976779868354683 0 NA NA prediction 0.953559736709366 Functional Loss - PMCH ENSG00000183395 CDS Human protein_coding chr12:102590817 chr12:102590817 stopgain 1.000 1 21 hm7G_associated_SNPs_1360 0 0 0 0 1 PMCH chr12:102590751 5'GT 102590751 Upstream 67bp 1338 chr1 8030977 8030977 1 + G A CESC 8030977 + 8030957 8030997 41 GCTGCTGTGAAGGAGATACTGAAGGAGCAGGAAAACCGGAA GCTGCTGTGAAGGAGATACTAAAGGAGCAGGAAAACCGGAA Direct Loss 0.976716357703576 0 NA NA prediction 0.953432715407152 Functional Loss - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030977 chr1:8030977 synonymous SNV . 0 21 hm7G_associated_SNPs_1361 0 0 1 0 2 PARK7 chr1:8030954 3'AG 8030954 Downstream 24bp 1339 chr1 8030977 8030977 1 + G A CESC 8030977 + 8030957 8030997 41 GCTGCTGTGAAGGAGATACTGAAGGAGCAGGAAAACCGGAA GCTGCTGTGAAGGAGATACTAAAGGAGCAGGAAAACCGGAA Direct Loss 0.976716357703576 0 NA NA prediction 0.953432715407152 Functional Loss - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8030977 chr1:8030977 synonymous SNV . 0 21 hm7G_associated_SNPs_1361 0 0 1 0 2 PARK7 chr1:8031023 5'GT 8031023 Upstream 47bp 1340 chr6 44218061 44218061 1 + G A PRAD 44218061 + 44218041 44218081 41 GAGAGAAGGAAATTAGTGATGATGAGGCAGAGGAAGAGAAA GAGAGAAGGAAATTAGTGATAATGAGGCAGAGGAAGAGAAA Direct Loss 0.976388143917345 0 NA NA prediction 0.95277628783469 Functional Loss - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218061 chr6:44218061 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1363 0 0 1 0 1 HSP90AB1 chr6:44218028 3'AG 44218028 Downstream 34bp 1341 chr17 34951410 34951410 1 + G T LUSC 34951410 + 34951390 34951430 41 GGGTTTCATAGGAGCTGGCTGCTGAATGTAAGAGTGCAGGC GGGTTTCATAGGAGCTGGCTTCTGAATGTAAGAGTGCAGGC Direct Loss 0.976348861117035 0 NA NA prediction 0.952697722234069 Functional Loss - DHRS11 ENSG00000108272 CDS Human other chr17:34951410 chr17:34951410 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_1364 0 0 1 0 1 DHRS11 chr17:34951401 3'AG 34951401 Downstream 10bp 1342 chr11 114320644 114320644 1 + G T LGG 114320644 + 114320624 114320664 41 TCTTCAAGAAAAAAATAGATGAAAAGAAGAGGAAAATTATA TCTTCAAGAAAAAAATAGATTAAAAGAAGAGGAAAATTATA Direct Loss 0.976283176767669 0 NA NA prediction 0.952566353535337 Functional Loss - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114320644 chr11:114320644 stopgain 0.999 0 21 hm7G_associated_SNPs_1365 0 0 1 3 1 REXO2 chr11:114320568 3'AG 114320568 Downstream 77bp 1343 chr9 139744496 139744496 1 + G A CESC 139744496 + 139744476 139744516 41 GACAAAGTGTCGGGCGACATGCAGAAGCAAGGCTGCGACTG GACAAAGTGTCGGGCGACATACAGAAGCAAGGCTGCGACTG Direct Loss 0.976146258503861 0 NA NA prediction 0.952292517007722 Functional Loss - PHPT1 ENSG00000054148 CDS Human protein_coding chr9:139744496 chr9:139744496 nonsynonymous SNV 0.641 0 21 hm7G_associated_SNPs_1368 0 0 1 0 2 PHPT1 chr9:139744465 3'AG 139744465 Downstream 32bp 1344 chr9 139744496 139744496 1 + G A CESC 139744496 + 139744476 139744516 41 GACAAAGTGTCGGGCGACATGCAGAAGCAAGGCTGCGACTG GACAAAGTGTCGGGCGACATACAGAAGCAAGGCTGCGACTG Direct Loss 0.976146258503861 0 NA NA prediction 0.952292517007722 Functional Loss - PHPT1 ENSG00000054148 CDS Human protein_coding chr9:139744496 chr9:139744496 nonsynonymous SNV 0.641 0 21 hm7G_associated_SNPs_1368 0 0 1 0 2 PHPT1 chr9:139744589 5'GT 139744589 Upstream 94bp 1345 chr22 45691457 45691457 1 + G C CESC 45691457 + 45691437 45691477 41 ACAGGGACATGGGGAGTTCTGATGGGGAAACGACTCACGAC ACAGGGACATGGGGAGTTCTCATGGGGAAACGACTCACGAC Direct Loss 0.975973200890527 0 NA NA prediction 0.951946401781053 Functional Loss - UPK3A ENSG00000100373 CDS Human protein_coding chr22:45691457 chr22:45691457 nonsynonymous SNV 0.768 3 21 hm7G_associated_SNPs_1371 0 0 0 0 1 UPK3A chr22:45691441 3'AG 45691441 Downstream 17bp 1346 chr10 96702020 96702020 1 + G A SKCM 96702020 + 96702000 96702040 41 TCATGACGCTGCGGAATTTTGGGATGGGGAAGAGGAGCATT TCATGACGCTGCGGAATTTTAGGATGGGGAAGAGGAGCATT Direct Loss 0.975913173049066 0 NA NA prediction 0.951826346098132 Functional Loss - CYP2C9 ENSG00000138109 CDS Human protein_coding chr10:96702020 chr10:96702020 nonsynonymous SNV 0.167 3 21 hm7G_associated_SNPs_1372 0 0 0 0 1 CYP2C9 chr10:96701949 3'AG 96701949 Downstream 72bp 1347 chr3 45049009 45049009 1 + G A rs145100368 45049009 + 45048989 45049029 41 CAGCAAGGGAGTTGTGACGTGCATGAGGAAAGTGGGGAAGG CAGCAAGGGAGTTGTGACGTACATGAGGAAAGTGGGGAAGG Direct Loss 0.975806290122533 0 NA NA prediction 0.951612580245066 Functional Loss - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45049009 chr3:45049009 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_1375 0 0 1 0 2 EXOSC7 chr3:45048912 3'AG 45048912 Downstream 98bp 1348 chr3 45049009 45049009 1 + G A rs145100368 45049009 + 45048989 45049029 41 CAGCAAGGGAGTTGTGACGTGCATGAGGAAAGTGGGGAAGG CAGCAAGGGAGTTGTGACGTACATGAGGAAAGTGGGGAAGG Direct Loss 0.975806290122533 0 NA NA prediction 0.951612580245066 Functional Loss - EXOSC7 ENSG00000075914 CDS Human protein_coding chr3:45049009 chr3:45049009 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_1375 0 0 1 0 2 EXOSC7 chr3:45049067 5'GT 45049067 Upstream 59bp 1349 chr7 127230147 127230147 1 + G T LUSC 127230147 + 127230127 127230167 41 TCTTTGTGGTGGACAGTAATGACCGGGAGCGGGTCCAAGAA TCTTTGTGGTGGACAGTAATTACCGGGAGCGGGTCCAAGAA Direct Loss 0.975766653573201 0 NA NA prediction 0.951533307146403 Functional Loss - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127230147 chr7:127230147 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_1376 0 0 1 0 1 ARF5 chr7:127230120 3'AG 127230120 Downstream 28bp 1350 chr19 56185344 56185344 1 + G A HNSC 56185344 + 56185324 56185364 41 TTTGACTGCCAGAAAGCCATGCAGGGCCTGACGGGCCGCAA TTTGACTGCCAGAAAGCCATACAGGGCCTGACGGGCCGCAA Direct Loss 0.97567287173193 0 NA NA prediction 0.95134574346386 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56185344 chr19:56185344 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1380 0 0 1 0 1 U2AF2 chr19:56185300 3'AG 56185300 Downstream 45bp 1351 chrX 102864028 102864028 1 + G A UCEC 102864028 + 102864008 102864048 41 AATAAAAATGAAGGAAACCTGGAAAACGAGGGAAAGCCAGA AATAAAAATGAAGGAAACCTAGAAAACGAGGGAAAGCCAGA Direct Loss 0.975636371472011 0 NA NA prediction 0.951272742944023 Functional Loss - TCEAL3 ENSG00000196507 CDS Human protein_coding chrX:102864028 chrX:102864028 synonymous SNV . 0 21 hm7G_associated_SNPs_1381 0 0 0 0 1 TCEAL3 chrX:102863966 3'AG 102863966 Downstream 63bp 1352 chr2 98351872 98351872 1 + G A SKCM 98351872 + 98351852 98351892 41 GAGGCCCTCATGCTGGTCATGGAGATGGCTGGGGGCGGGCC GAGGCCCTCATGCTGGTCATAGAGATGGCTGGGGGCGGGCC Direct Loss 0.975634866091948 0 NA NA prediction 0.951269732183896 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98351872 chr2:98351872 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1382 0 0 0 0 1 ZAP70 chr2:98351919 5'GT 98351919 Upstream 48bp 1353 chr3 127340586 127340586 1 + G A CESC 127340586 + 127340566 127340606 41 AACAAGTTCAGCCACGACCTGAAAAGGAAAATGATCCTGCA AACAAGTTCAGCCACGACCTAAAAAGGAAAATGATCCTGCA Direct Loss 0.975553493703716 0 NA NA prediction 0.951106987407431 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127340586 chr3:127340586 synonymous SNV . 0 21 hm7G_associated_SNPs_1383 0 0 1 0 1 MCM2 chr3:127340506 3'AG 127340506 Downstream 81bp 1354 chr5 115238620 115238620 1 + G T UCEC 115238620 + 115238600 115238640 41 GAAATGGTGATGGGGGGAATGGTATTGGAGACAAATATGAA GAAATGGTGATGGGGGGAATTGTATTGGAGACAAATATGAA Direct Loss 0.975543400249953 0 NA NA prediction 0.951086800499906 Functional Loss - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115238620 chr5:115238620 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1385 0 0 1 0 2 AP3S1 chr5:115238582 3'AG 115238582 Downstream 39bp 1355 chr5 115238620 115238620 1 + G T UCEC 115238620 + 115238600 115238640 41 GAAATGGTGATGGGGGGAATGGTATTGGAGACAAATATGAA GAAATGGTGATGGGGGGAATTGTATTGGAGACAAATATGAA Direct Loss 0.975543400249953 0 NA NA prediction 0.951086800499906 Functional Loss - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115238620 chr5:115238620 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1385 0 0 1 0 2 AP3S1 chr5:115238689 5'GT 115238689 Upstream 70bp 1356 chr16 58552688 58552688 1 + G A UCEC 58552688 + 58552668 58552708 41 ACCAGGATGGAGGGGGAGATGATAAAAGGGAAGAGGGCAGC ACCAGGATGGAGGGGGAGATAATAAAAGGGAAGAGGGCAGC Direct Loss 0.975530548628502 0 NA NA prediction 0.951061097257005 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58552688 chr16:58552688 nonsynonymous SNV 0.119 0 21 hm7G_associated_SNPs_1386 0 0 0 2 1 SETD6 chr16:58552628 3'AG 58552628 Downstream 61bp 1357 chr2 74717809 74717809 1 + G A rs561098173 74717809 + 74717789 74717829 41 AATCGCCTGGCTGAGGAGCTGGTGGCTGAGGAGGAGCGCAT AATCGCCTGGCTGAGGAGCTAGTGGCTGAGGAGGAGCGCAT Direct Loss 0.975482812161008 0 NA NA prediction 0.950965624322016 Functional Loss - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74717809 chr2:74717809 synonymous SNV . 0 21 hm7G_associated_SNPs_1387 0 0 1 0 2 TTC31 chr2:74717783 3'AG 74717783 Downstream 27bp 1358 chr2 74717809 74717809 1 + G A rs561098173 74717809 + 74717789 74717829 41 AATCGCCTGGCTGAGGAGCTGGTGGCTGAGGAGGAGCGCAT AATCGCCTGGCTGAGGAGCTAGTGGCTGAGGAGGAGCGCAT Direct Loss 0.975482812161008 0 NA NA prediction 0.950965624322016 Functional Loss - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74717809 chr2:74717809 synonymous SNV . 0 21 hm7G_associated_SNPs_1387 0 0 1 0 2 TTC31 chr2:74717866 5'GT 74717866 Upstream 58bp 1359 chr14 77929038 77929038 1 + G T UCEC 77929038 + 77929018 77929058 41 ACAAATCTCGTGGCCTTAATGAAGGAAGAAGGGGTGAAACT ACAAATCTCGTGGCCTTAATTAAGGAAGAAGGGGTGAAACT Direct Loss 0.975385112569395 0 NA NA prediction 0.95077022513879 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77929038 chr14:77929038 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1389 0 0 1 0 2 AHSA1 chr14:77928985 3'AG 77928985 Downstream 54bp 1360 chr14 77929038 77929038 1 + G T UCEC 77929038 + 77929018 77929058 41 ACAAATCTCGTGGCCTTAATGAAGGAAGAAGGGGTGAAACT ACAAATCTCGTGGCCTTAATTAAGGAAGAAGGGGTGAAACT Direct Loss 0.975385112569395 0 NA NA prediction 0.95077022513879 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77929038 chr14:77929038 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1389 0 0 1 0 2 AHSA1 chr14:77929102 5'GT 77929102 Upstream 65bp 1361 chr10 88676951 88676951 1 + G C LUSC 88676951 + 88676931 88676971 41 AAGTTGGTAAAGGCCGATATGGAGAAGTATGGATGGGCAAA AAGTTGGTAAAGGCCGATATCGAGAAGTATGGATGGGCAAA Direct Loss 0.975256466837839 0 NA NA prediction 0.950512933675677 Functional Loss - BMPR1A ENSG00000107779 CDS Human protein_coding chr10:88676951 chr10:88676951 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_1390 0 0 0 0 1 BMPR1A chr10:88676891 3'AG 88676891 Downstream 61bp 1362 chrX 55784734 55784734 1 + G C BLCA 55784734 + 55784714 55784754 41 AGGAAACACTTTGAAAAGCTGGAAAGAGTGGATGGACCAAA AGGAAACACTTTGAAAAGCTCGAAAGAGTGGATGGACCAAA Direct Loss 0.975188072291353 0 NA NA prediction 0.950376144582707 Functional Loss - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55784734 chrX:55784734 synonymous SNV . 0 21 hm7G_associated_SNPs_1392 0 0 1 0 1 RRAGB chrX:55784679 3'AG 55784679 Downstream 56bp 1363 chr5 52942189 52942189 1 + G A BLCA 52942189 + 52942169 52942209 41 AGAAATGGAAGATGGAGTTTGATACCAGAGAGCGATGGGAA AGAAATGGAAGATGGAGTTTAATACCAGAGAGCGATGGGAA Direct Loss 0.975164669491668 0 NA NA prediction 0.950329338983336 Functional Loss - NDUFS4 ENSG00000164258 CDS Human protein_coding chr5:52942189 chr5:52942189 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1393 0 0 1 0 1 NDUFS4 chr5:52942235 5'GT 52942235 Upstream 47bp 1364 chr20 1106170 1106170 1 + G A UCEC 1106170 + 1106150 1106190 41 AATGATAAGAAGTCAGAACTGCTGCCAGCTGGGTGGAACAA AATGATAAGAAGTCAGAACTACTGCCAGCTGGGTGGAACAA Direct Loss 0.975106811692762 0 NA NA prediction 0.950213623385525 Functional Loss - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1106170 chr20:1106170 synonymous SNV . 0 21 hm7G_associated_SNPs_1394 0 0 1 0 1 PSMF1 chr20:1106141 3'AG 1106141 Downstream 30bp 1365 chr7 44042241 44042241 1 + G T UCEC 44042241 + 44042221 44042261 41 TCCTTTTGCTGGAAAAGGAAGATGGAGTGGTGGGACAAATC TCCTTTTGCTGGAAAAGGAATATGGAGTGGTGGGACAAATC Direct Loss 0.975079308498787 0 NA NA prediction 0.950158616997574 Functional Loss - SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44042241 chr7:44042241 nonsynonymous SNV 0.024 3 21 hm7G_associated_SNPs_1395 0 0 0 0 1 SPDYE1 chr7:44042189 3'AG 44042189 Downstream 53bp 1366 chr5 140080048 140080048 1 + G A SKCM 140080048 + 140080028 140080068 41 ATTCACTTCGCTGTGAAGATGGCGTCGGGCAGCGGGGTAGG ATTCACTTCGCTGTGAAGATAGCGTCGGGCAGCGGGGTAGG Direct Loss 0.975048523573262 0 NA NA prediction 0.950097047146524 Functional Loss - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140080048 chr5:140080048 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1396 0 0 1 0 1 ZMAT2 chr5:140080063 5'GT 140080063 Upstream 16bp 1367 chr13 28367764 28367764 1 + G A UCEC 28367764 + 28367744 28367784 41 ACGGCTTTCACCAGCACGCAGCTGCTAGAGCTGGAGCGCGA ACGGCTTTCACCAGCACGCAACTGCTAGAGCTGGAGCGCGA Direct Loss 0.974960592856301 0 NA NA prediction 0.949921185712603 Functional Loss - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367764 chr13:28367764 synonymous SNV . 0 21 hm7G_associated_SNPs_1397 0 0 0 0 1 GSX1 chr13:28367703 3'AG 28367703 Downstream 62bp 1368 chr1 151141526 151141526 1 + G A BLCA 151141526 + 151141506 151141546 41 AAAATGTTGAGTTTGACTCTGATGAGGAGGAACCACCTGAT AAAATGTTGAGTTTGACTCTAATGAGGAGGAACCACCTGAT Direct Loss 0.9749054953955 0 NA NA prediction 0.949810990791 Functional Loss - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151141526 chr1:151141526 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1398 0 0 1 2 1 SCNM1;TNFAIP8L2-SCNM1 chr1:151141462 3'AG 151141462 Downstream 65bp 1369 chr2 187373328 187373328 1 + G T ACC 187373328 + 187373308 187373348 41 AATGGTGAAAGAAGTGACTTGGAAGAGGACAACGAGAGGGA AATGGTGAAAGAAGTGACTTTGAAGAGGACAACGAGAGGGA Direct Loss 0.974791393680259 0 NA NA prediction 0.949582787360518 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187373328 chr2:187373328 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_1400 0 0 1 0 1 ZC3H15 chr2:187373270 3'AG 187373270 Downstream 59bp 1370 chr17 79673992 79673992 1 + G C BLCA 79673992 + 79673972 79674012 41 ACACATTTCACCGTCCGCCTGACCGAGGCGAAGCCCGTGGA ACACATTTCACCGTCCGCCTCACCGAGGCGAAGCCCGTGGA Direct Loss 0.974686213967552 0 NA NA prediction 0.949372427935104 Functional Loss - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79673992 chr17:79673992 synonymous SNV . 0 21 hm7G_associated_SNPs_1404 0 0 1 0 2 MRPL12 chr17:79673936 3'AG 79673936 Downstream 57bp 1371 chr17 79673992 79673992 1 + G C BLCA 79673992 + 79673972 79674012 41 ACACATTTCACCGTCCGCCTGACCGAGGCGAAGCCCGTGGA ACACATTTCACCGTCCGCCTCACCGAGGCGAAGCCCGTGGA Direct Loss 0.974686213967552 0 NA NA prediction 0.949372427935104 Functional Loss - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79673992 chr17:79673992 synonymous SNV . 0 21 hm7G_associated_SNPs_1404 0 0 1 0 2 MRPL12 chr17:79674070 5'GT 79674070 Upstream 79bp 1372 chr1 38027204 38027204 1 + G A OV 38027204 + 38027184 38027224 41 AACTGTGCGGAGAGGGGGCTGCTGCTGCTGCGAGTCCGGGA AACTGTGCGGAGAGGGGGCTACTGCTGCTGCGAGTCCGGGA Direct Loss 0.974660189729017 0 NA NA prediction 0.949320379458033 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027204 chr1:38027204 synonymous SNV . 0 21 hm7G_associated_SNPs_1406 0 0 0 0 1 DNALI1 chr1:38027158 3'AG 38027158 Downstream 47bp 1373 chr18 641454 641454 1 + G C rs147972292 641454 + 641434 641474 41 TTGGAGGACACCGCCTATCTGGTGGAGAAGATGAGAGGGCA TTGGAGGACACCGCCTATCTCGTGGAGAAGATGAGAGGGCA Direct Loss 0.974633368384524 0 NA NA prediction 0.949266736769047 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641454 chr18:641454 synonymous SNV . 0 21 hm7G_associated_SNPs_1408 0 0 0 0 1 CLUL1 chr18:641541 5'GT 641541 Upstream 88bp 1374 chr4 81207563 81207563 1 + G A SKCM 81207563 + 81207543 81207583 41 CCTCAGCAATACATAGAACTGAAAAAACAGGGCGGGAGTGG CCTCAGCAATACATAGAACTAAAAAAACAGGGCGGGAGTGG Direct Loss 0.9745541276174 0 NA NA prediction 0.949108255234801 Functional Loss - FGF5 ENSG00000138675 CDS Human protein_coding chr4:81207563 chr4:81207563 nonsynonymous SNV 0.108 1 21 hm7G_associated_SNPs_1409 0 0 0 0 1 FGF5 chr4:81207479 3'AG 81207479 Downstream 85bp 1375 chr3 128993768 128993768 1 + G A BLCA 128993768 + 128993748 128993788 41 CCTGGGATGAGGTAGGGGATGAATTTGAGAAGGAGGAAACG CCTGGGATGAGGTAGGGGATAAATTTGAGAAGGAGGAAACG Direct Loss 0.974494474655992 0 NA NA prediction 0.948988949311984 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128993768 chr3:128993768 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1410 0 0 1 0 2 COPG1 chr3:128993681 3'AG 128993681 Downstream 88bp 1376 chr3 128993768 128993768 1 + G A BLCA 128993768 + 128993748 128993788 41 CCTGGGATGAGGTAGGGGATGAATTTGAGAAGGAGGAAACG CCTGGGATGAGGTAGGGGATAAATTTGAGAAGGAGGAAACG Direct Loss 0.974494474655992 0 NA NA prediction 0.948988949311984 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128993768 chr3:128993768 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1410 0 0 1 0 2 COPG1 chr3:128993819 5'GT 128993819 Upstream 52bp 1377 chr7 825194 825194 1 + G A rs114907681 825194 + 825174 825214 41 GGGCTGTTCCCAGATCTCCTGGTGAGGGAGACGGAGGCCGT GGGCTGTTCCCAGATCTCCTAGTGAGGGAGACGGAGGCCGT Direct Loss 0.974487262244551 0 NA NA prediction 0.948974524489103 Functional Loss - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:825194 chr7:825194 synonymous SNV . 0 21 hm7G_associated_SNPs_1411 0 0 1 0 1 DNAAF5 chr7:825154 3'AG 825154 Downstream 41bp 1378 chr19 36164441 36164441 1 + G T UCEC 36164441 + 36164421 36164461 41 CGCCTCTGGGACCGCGTCATGATTGAGGTGGGCGGGGTGGA CGCCTCTGGGACCGCGTCATTATTGAGGTGGGCGGGGTGGA Direct Loss 0.974469472348716 0 NA NA prediction 0.948938944697432 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36164441 chr19:36164441 nonsynonymous SNV 0.989 5 21 hm7G_associated_SNPs_1413 0 0 0 0 1 UPK1A chr19:36164447 5'GT 36164447 Upstream 7bp 1379 chr3 50614997 50614997 1 + G T LUSC 50614997 + 50614977 50615017 41 TCTCTCTGACCCATGAGAATGCTCAGAGGTAGGTGGGGGAG TCTCTCTGACCCATGAGAATTCTCAGAGGTAGGTGGGGGAG Direct Loss 0.974338003921851 0 NA NA prediction 0.948676007843703 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614997 chr3:50614997 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_1415 0 0 1 0 2 HEMK1 chr3:50614940 3'AG 50614940 Downstream 58bp 1380 chr3 50614997 50614997 1 + G T LUSC 50614997 + 50614977 50615017 41 TCTCTCTGACCCATGAGAATGCTCAGAGGTAGGTGGGGGAG TCTCTCTGACCCATGAGAATTCTCAGAGGTAGGTGGGGGAG Direct Loss 0.974338003921851 0 NA NA prediction 0.948676007843703 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614997 chr3:50614997 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_1415 0 0 1 0 2 HEMK1 chr3:50615004 5'GT 50615004 Upstream 8bp 1381 chr11 1862108 1862108 1 + G A SKCM 1862108 + 1862088 1862128 41 GAAGAGGAGAAGTACGACATGGAGGTGAGGGTGCAGAAGAC GAAGAGGAGAAGTACGACATAGAGGTGAGGGTGCAGAAGAC Direct Loss 0.97430706037439 0 NA NA prediction 0.948614120748779 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862108 chr11:1862108 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_1417 0 0 0 0 2 TNNI2 chr11:1862049 3'AG 1862049 Downstream 60bp 1382 chr11 1862108 1862108 1 + G A SKCM 1862108 + 1862088 1862128 41 GAAGAGGAGAAGTACGACATGGAGGTGAGGGTGCAGAAGAC GAAGAGGAGAAGTACGACATAGAGGTGAGGGTGCAGAAGAC Direct Loss 0.97430706037439 0 NA NA prediction 0.948614120748779 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862108 chr11:1862108 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_1417 0 0 0 0 2 TNNI2 chr11:1862138 5'GT 1862138 Upstream 31bp 1383 chr1 40432287 40432287 1 + G C LUSC 40432287 + 40432267 40432307 41 TTATAGCAAAAGGCATACCTGCTGGCAGCGGGGGTCATTGT TTATAGCAAAAGGCATACCTCCTGGCAGCGGGGGTCATTGT Direct Loss 0.974275176112286 0 NA NA prediction 0.948550352224572 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432287 chr1:40432287 synonymous SNV . 0 21 hm7G_associated_SNPs_1418 0 0 0 1 3 MFSD2A chr1:40432273 3'AG 40432273 Downstream 15bp 1384 chr1 40432287 40432287 1 + G C LUSC 40432287 + 40432267 40432307 41 TTATAGCAAAAGGCATACCTGCTGGCAGCGGGGGTCATTGT TTATAGCAAAAGGCATACCTCCTGGCAGCGGGGGTCATTGT Direct Loss 0.974275176112286 0 NA NA prediction 0.948550352224572 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432287 chr1:40432287 synonymous SNV . 0 21 hm7G_associated_SNPs_1418 0 0 0 1 3 MFSD2A chr1:40432279 3'AG 40432279 Downstream 9bp 1385 chr1 40432287 40432287 1 + G C LUSC 40432287 + 40432267 40432307 41 TTATAGCAAAAGGCATACCTGCTGGCAGCGGGGGTCATTGT TTATAGCAAAAGGCATACCTCCTGGCAGCGGGGGTCATTGT Direct Loss 0.974275176112286 0 NA NA prediction 0.948550352224572 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432287 chr1:40432287 synonymous SNV . 0 21 hm7G_associated_SNPs_1418 0 0 0 1 3 MFSD2A chr1:40432363 5'GT 40432363 Upstream 77bp 1386 chr17 36909435 36909435 1 + G T LUSC 36909435 + 36909415 36909455 41 TATAACGGAGGGGCCGTCATGGCCATGAAGGGGAAGAACTG TATAACGGAGGGGCCGTCATTGCCATGAAGGGGAAGAACTG Direct Loss 0.974205195447216 0 NA NA prediction 0.948410390894431 Functional Loss - PSMB3 ENSG00000108294 CDS Human other chr17:36909435 chr17:36909435 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1419 0 0 1 0 1 PSMB3 chr17:36909403 3'AG 36909403 Downstream 33bp 1387 chr1 155279943 155279943 1 + G A HNSC 155279943 + 155279923 155279963 41 AGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCA AGATCGTTAGGGTGCTGACTAAGGATGAGATGGGGCACCCA Direct Loss 0.974106631039117 0 NA NA prediction 0.948213262078234 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155279943 chr1:155279943 nonsynonymous SNV 0.988 0 21 hm7G_associated_SNPs_1424 0 0 1 0 2 FDPS chr1:155279855 3'AG 155279855 Downstream 89bp 1388 chr1 155279943 155279943 1 + G A HNSC 155279943 + 155279923 155279963 41 AGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCA AGATCGTTAGGGTGCTGACTAAGGATGAGATGGGGCACCCA Direct Loss 0.974106631039117 0 NA NA prediction 0.948213262078234 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155279943 chr1:155279943 nonsynonymous SNV 0.988 0 21 hm7G_associated_SNPs_1424 0 0 1 0 2 FDPS chr1:155279996 5'GT 155279996 Upstream 54bp 1389 chr2 232576674 232576674 1 + G T UCEC 232576674 + 232576654 232576694 41 GAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGG GAAGGTGGGGAGGAAGAGGATGAGGAAGAAGAAGGTGATGG Direct Loss 0.974091791022616 0 NA NA prediction 0.948183582045232 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576674 chr2:232576674 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_1426 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 78bp 1390 chr2 232576674 232576674 1 + G T UCEC 232576674 + 232576654 232576694 41 GAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGG GAAGGTGGGGAGGAAGAGGATGAGGAAGAAGAAGGTGATGG Direct Loss 0.974091791022616 0 NA NA prediction 0.948183582045232 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576674 chr2:232576674 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_1426 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 75bp 1391 chr2 232576674 232576674 1 + G T UCEC 232576674 + 232576654 232576694 41 GAAGGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGG GAAGGTGGGGAGGAAGAGGATGAGGAAGAAGAAGGTGATGG Direct Loss 0.974091791022616 0 NA NA prediction 0.948183582045232 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576674 chr2:232576674 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_1426 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 20bp 1392 chr11 61957800 61957800 1 + G A UCEC 61957800 + 61957780 61957820 41 GCTGCTCACGCTGGCCCTTTGCTGCTACCGGGGTGAGTACA GCTGCTCACGCTGGCCCTTTACTGCTACCGGGGTGAGTACA Direct Loss 0.974023482111771 0 NA NA prediction 0.948046964223541 Functional Loss - SCGB1D1 ENSG00000168515 CDS Human protein_coding chr11:61957800 chr11:61957800 nonsynonymous SNV 0.953 1 21 hm7G_associated_SNPs_1428 0 0 0 0 1 SCGB1D1 chr11:61957811 5'GT 61957811 Upstream 12bp 1393 chr12 6878829 6878829 1 + G A UCEC 6878829 + 6878809 6878849 41 GCCGGAAAGAGCGAAAGAAAGAAGTGGTGGAGGTGTGGAGG GCCGGAAAGAGCGAAAGAAAAAAGTGGTGGAGGTGTGGAGG Direct Loss 0.973958904907006 0 NA NA prediction 0.947917809814012 Functional Loss - PTMS ENSG00000159335 CDS Human protein_coding chr12:6878829 chr12:6878829 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1429 0 0 1 0 2 PTMS chr12:6878769 3'AG 6878769 Downstream 61bp 1394 chr12 6878829 6878829 1 + G A UCEC 6878829 + 6878809 6878849 41 GCCGGAAAGAGCGAAAGAAAGAAGTGGTGGAGGTGTGGAGG GCCGGAAAGAGCGAAAGAAAAAAGTGGTGGAGGTGTGGAGG Direct Loss 0.973958904907006 0 NA NA prediction 0.947917809814012 Functional Loss - PTMS ENSG00000159335 CDS Human protein_coding chr12:6878829 chr12:6878829 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1429 0 0 1 0 2 PTMS chr12:6878840 5'GT 6878840 Upstream 12bp 1395 chr7 100803826 100803826 1 + G A LUSC 100803826 + 100803806 100803846 41 GAGTCGCCACGGAGTGTGCTGGAGGAGATGGGTTTGGCATA GAGTCGCCACGGAGTGTGCTAGAGGAGATGGGTTTGGCATA Direct Loss 0.97392624915445 0 NA NA prediction 0.947852498308901 Functional Loss - AP1S1 ENSG00000106367 CDS Human protein_coding chr7:100803826 chr7:100803826 synonymous SNV . 0 21 hm7G_associated_SNPs_1431 0 0 1 0 1 AP1S1 chr7:100803800 3'AG 100803800 Downstream 27bp 1396 chr2 233409265 233409265 1 + G A LUSC 233409265 + 233409245 233409285 41 CAGTGGCAGCGGCAAGGGCTGGTGGCGGCAGCGCTGGAGAA CAGTGGCAGCGGCAAGGGCTAGTGGCGGCAGCGCTGGAGAA Direct Loss 0.973908110184935 0 NA NA prediction 0.94781622036987 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233409265 chr2:233409265 synonymous SNV . 0 21 hm7G_associated_SNPs_1432 0 0 0 0 1 CHRNG chr2:233409290 5'GT 233409290 Upstream 26bp 1397 chr8 80577108 80577108 1 + G A BLCA 80577108 + 80577088 80577128 41 CCAGGTTGAACTGTCTGGCTGAAGCAAGGGAGGGTCTGGCA CCAGGTTGAACTGTCTGGCTAAAGCAAGGGAGGGTCTGGCA Direct Loss 0.97384957173273 0 NA NA prediction 0.94769914346546 Functional Loss - STMN2 ENSG00000104435 CDS Human protein_coding chr8:80577108 chr8:80577108 synonymous SNV . 0 21 hm7G_associated_SNPs_1433 0 0 0 0 1 STMN2 chr8:80577050 3'AG 80577050 Downstream 59bp 1398 chr11 73681024 73681024 1 + G A COAD 73681024 + 73681004 73681044 41 AGCCCCAAATACTTCAAGAAGGTGCCAGGGGAGGGGATGCC AGCCCCAAATACTTCAAGAAAGTGCCAGGGGAGGGGATGCC Direct Loss 0.97383443781795 0 NA NA prediction 0.9476688756359 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73681024 chr11:73681024 synonymous SNV . 0 21 hm7G_associated_SNPs_1434 0 0 0 0 1 DNAJB13 chr11:73681006 3'AG 73681006 Downstream 19bp 1399 chr12 13208570 13208570 1 + G A LUAD 13208570 + 13208550 13208590 41 GACGATCTGGTGCTTAACCTGCAGAAGAATGGAGGGGTCAA GACGATCTGGTGCTTAACCTACAGAAGAATGGAGGGGTCAA Direct Loss 0.973768416679595 0 NA NA prediction 0.947536833359189 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13208570 chr12:13208570 synonymous SNV . 0 21 hm7G_associated_SNPs_1435 0 0 1 1 1 FAM234B chr12:13208485 3'AG 13208485 Downstream 86bp 1400 chr12 64891772 64891772 1 + G T STAD 64891772 + 64891752 64891792 41 AAGAAATTAAAGGAAGAGATGGAAGGGGTGGTTAAAGAACT AAGAAATTAAAGGAAGAGATTGAAGGGGTGGTTAAAGAACT Direct Loss 0.973611473057394 0 NA NA prediction 0.947222946114789 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64891772 chr12:64891772 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_1436 0 0 1 0 2 TBK1 chr12:64891748 3'AG 64891748 Downstream 25bp 1401 chr12 64891772 64891772 1 + G T STAD 64891772 + 64891752 64891792 41 AAGAAATTAAAGGAAGAGATGGAAGGGGTGGTTAAAGAACT AAGAAATTAAAGGAAGAGATTGAAGGGGTGGTTAAAGAACT Direct Loss 0.973611473057394 0 NA NA prediction 0.947222946114789 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64891772 chr12:64891772 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_1436 0 0 1 0 2 TBK1 chr12:64891819 5'GT 64891819 Upstream 48bp 1402 chr11 71821194 71821194 1 - C T STAD 71821194 - 71821174 71821214 41 TCAGAGGATGATGAGGATATGCAGGACATGGACGAGATGAA TCAGAGGATGATGAGGATATACAGGACATGGACGAGATGAA Direct Loss 0.973597598380809 0 NA NA prediction 0.947195196761617 Functional Loss - ANAPC15 ENSG00000110200 CDS Human protein_coding chr11:71821194 chr11:71821194 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1437 0 0 1 0 2 ANAPC15 chr11:71821134 5'GT 71821134 Upstream 61bp 1403 chr11 71821194 71821194 1 - C T STAD 71821194 - 71821174 71821214 41 TCAGAGGATGATGAGGATATGCAGGACATGGACGAGATGAA TCAGAGGATGATGAGGATATACAGGACATGGACGAGATGAA Direct Loss 0.973597598380809 0 NA NA prediction 0.947195196761617 Functional Loss - ANAPC15 ENSG00000110200 CDS Human protein_coding chr11:71821194 chr11:71821194 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1437 0 0 1 0 2 ANAPC15 chr11:71821271 3'AG 71821271 Downstream 78bp 1404 chr3 9979312 9979312 1 + G T SARC 9979312 + 9979292 9979332 41 GACTTCGAGTGCCACCGCCTGCTGGAGCTGAGTGAGGAGCT GACTTCGAGTGCCACCGCCTTCTGGAGCTGAGTGAGGAGCT Direct Loss 0.973596611203149 0 NA NA prediction 0.947193222406297 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9979312 chr3:9979312 synonymous SNV . 0 21 hm7G_associated_SNPs_1438 0 0 1 0 2 CRELD1 chr3:9979246 3'AG 9979246 Downstream 67bp 1405 chr3 9979312 9979312 1 + G T SARC 9979312 + 9979292 9979332 41 GACTTCGAGTGCCACCGCCTGCTGGAGCTGAGTGAGGAGCT GACTTCGAGTGCCACCGCCTTCTGGAGCTGAGTGAGGAGCT Direct Loss 0.973596611203149 0 NA NA prediction 0.947193222406297 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9979312 chr3:9979312 synonymous SNV . 0 21 hm7G_associated_SNPs_1438 0 0 1 0 2 CRELD1 chr3:9979356 5'GT 9979356 Upstream 45bp 1406 chr10 70100979 70100979 1 + G A BLCA 70100979 + 70100959 70100999 41 TTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAA TTCATATTGATATTGGAGCTAATGGCAGAGCCACAGGAGAA Direct Loss 0.973595568384112 0 NA NA prediction 0.947191136768224 Functional Loss - HNRNPH3 ENSG00000096746;ENSG00000204130 CDS Human other chr10:70100979 chr10:70100979 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1439 0 0 1 0 2 HNRNPH3 chr10:70100931 3'AG 70100931 Downstream 49bp 1407 chr10 70100979 70100979 1 + G A BLCA 70100979 + 70100959 70100999 41 TTCATATTGATATTGGAGCTGATGGCAGAGCCACAGGAGAA TTCATATTGATATTGGAGCTAATGGCAGAGCCACAGGAGAA Direct Loss 0.973595568384112 0 NA NA prediction 0.947191136768224 Functional Loss - HNRNPH3 ENSG00000096746;ENSG00000204130 CDS Human protein_coding chr10:70100979 chr10:70100979 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1439 0 0 1 0 2 HNRNPH3 chr10:70101066 5'GT 70101066 Upstream 88bp 1408 chr3 10219607 10219607 1 + G T SARC 10219607 + 10219587 10219627 41 GTGAGCATCACGCGGGAGCTGCTGTGGTGGTGGGGCATGCG GTGAGCATCACGCGGGAGCTTCTGTGGTGGTGGGGCATGCG Direct Loss 0.973586797331823 0 NA NA prediction 0.947173594663645 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10219607 chr3:10219607 synonymous SNV . 0 21 hm7G_associated_SNPs_1440 0 0 1 0 2 IRAK2 chr3:10219522 3'AG 10219522 Downstream 86bp 1409 chr3 10219607 10219607 1 + G T SARC 10219607 + 10219587 10219627 41 GTGAGCATCACGCGGGAGCTGCTGTGGTGGTGGGGCATGCG GTGAGCATCACGCGGGAGCTTCTGTGGTGGTGGGGCATGCG Direct Loss 0.973586797331823 0 NA NA prediction 0.947173594663645 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10219607 chr3:10219607 synonymous SNV . 0 21 hm7G_associated_SNPs_1440 0 0 1 0 2 IRAK2 chr3:10219704 5'GT 10219704 Upstream 98bp 1410 chr1 110555016 110555016 1 + G A COAD 110555016 + 110554996 110555036 41 TGATTTCACTCAGGAAACGTGCTCAGGGGGAGAAGCCCTTG TGATTTCACTCAGGAAACGTACTCAGGGGGAGAAGCCCTTG Direct Loss 0.973502832581914 0 NA NA prediction 0.947005665163828 Functional Loss - AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110555016 chr1:110555016 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1441 0 0 1 0 2 AHCYL1 chr1:110554984 3'AG 110554984 Downstream 33bp 1411 chr1 110555016 110555016 1 + G A COAD 110555016 + 110554996 110555036 41 TGATTTCACTCAGGAAACGTGCTCAGGGGGAGAAGCCCTTG TGATTTCACTCAGGAAACGTACTCAGGGGGAGAAGCCCTTG Direct Loss 0.973502832581914 0 NA NA prediction 0.947005665163828 Functional Loss - AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110555016 chr1:110555016 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1441 0 0 1 0 2 AHCYL1 chr1:110555084 5'GT 110555084 Upstream 69bp 1412 chr7 100484463 100484463 1 + G A SKCM 100484463 + 100484443 100484483 41 AAGAATATCACCGACTACCTGATCGAGGAAGTAAGCGCCGA AAGAATATCACCGACTACCTAATCGAGGAAGTAAGCGCCGA Direct Loss 0.973465296787823 0 NA NA prediction 0.946930593575646 Functional Loss - SRRT ENSG00000087087 CDS Human protein_coding chr7:100484463 chr7:100484463 synonymous SNV . 0 21 hm7G_associated_SNPs_1442 0 0 1 0 1 SRRT chr7:100484416 3'AG 100484416 Downstream 48bp 1413 chr14 57863520 57863520 1 + G A UCEC 57863520 + 57863500 57863540 41 ATCGTTTGCAAGTTGGATATGCACAAAAAGATGTTCCGCAG ATCGTTTGCAAGTTGGATATACACAAAAAGATGTTCCGCAG Direct Loss 0.973435223911118 0 NA NA prediction 0.946870447822237 Functional Loss - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57863520 chr14:57863520 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1444 0 0 1 1 2 NAA30 chr14:57863470 3'AG 57863470 Downstream 51bp 1414 chr14 57863520 57863520 1 + G A UCEC 57863520 + 57863500 57863540 41 ATCGTTTGCAAGTTGGATATGCACAAAAAGATGTTCCGCAG ATCGTTTGCAAGTTGGATATACACAAAAAGATGTTCCGCAG Direct Loss 0.973435223911118 0 NA NA prediction 0.946870447822237 Functional Loss - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57863520 chr14:57863520 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1444 0 0 1 1 2 NAA30 chr14:57863593 5'GT 57863593 Upstream 74bp 1415 chr19 51226868 51226868 1 + G T COAD 51226868 + 51226848 51226888 41 TCGGGGAGCAGAGAGGGAGTGGGAGGGAGGCTGGGGAGGTG TCGGGGAGCAGAGAGGGAGTTGGAGGGAGGCTGGGGAGGTG Direct Loss 0.973422109247614 0 NA NA prediction 0.946844218495227 Functional Loss - CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51226868 chr19:51226868 nonsynonymous SNV 0.955 1 21 hm7G_associated_SNPs_1445 0 0 1 0 1 CLEC11A chr19:51226929 5'GT 51226929 Upstream 62bp 1416 chr1 156563870 156563870 1 + G A UCEC 156563870 + 156563850 156563890 41 ACCGAGTGTGTCTATCGTCTGCAGTGAGGGAAGGTGGGTGG ACCGAGTGTGTCTATCGTCTACAGTGAGGGAAGGTGGGTGG Direct Loss 0.973379701155338 0 NA NA prediction 0.946759402310676 Functional Loss - NAXE ENSG00000163382 CDS Human protein_coding chr1:156563870 chr1:156563870 synonymous SNV . 0 21 hm7G_associated_SNPs_1446 0 0 1 0 1 NAXE chr1:156563882 5'GT 156563882 Upstream 13bp 1417 chr17 4619861 4619861 1 + G A rs188652308 4619861 + 4619841 4619881 41 ACCCGCCTGCAGGACCGGCTGCTGAGGAAGCTGGGCCAGCA ACCCGCCTGCAGGACCGGCTACTGAGGAAGCTGGGCCAGCA Direct Loss 0.973368671585423 0 NA NA prediction 0.946737343170845 Functional Loss - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4619861 chr17:4619861 synonymous SNV . 0 21 hm7G_associated_SNPs_1447 0 0 1 0 1 ARRB2 chr17:4619903 5'GT 4619903 Upstream 43bp 1418 chr16 84199429 84199429 1 + G A BRCA 84199429 + 84199409 84199449 41 CTAGGGGAGGGTACGCAGCTGAAAAGGAGGAGAGACAGCAG CTAGGGGAGGGTACGCAGCTAAAAAGGAGGAGAGACAGCAG Direct Loss 0.973312504058774 0 NA NA prediction 0.946625008117548 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84199429 chr16:84199429 nonsynonymous SNV 0.367 4 21 hm7G_associated_SNPs_1448 0 0 0 0 1 DNAAF1 chr16:84199389 3'AG 84199389 Downstream 41bp 1419 chr4 110745141 110745141 1 + G T STAD 110745141 + 110745121 110745161 41 GTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTC GTGGTTTTAGAGGTGGAAGATGAGGTGGAGGTGGGGGCTTC Direct Loss 0.973307656700739 0 NA NA prediction 0.946615313401479 Functional Loss - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110745141 chr4:110745141 stopgain 1.000 1 21 hm7G_associated_SNPs_1449 0 0 1 0 2 GAR1 chr4:110745121 3'AG 110745121 Downstream 21bp 1420 chr4 110745141 110745141 1 + G T STAD 110745141 + 110745121 110745161 41 GTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTC GTGGTTTTAGAGGTGGAAGATGAGGTGGAGGTGGGGGCTTC Direct Loss 0.973307656700739 0 NA NA prediction 0.946615313401479 Functional Loss - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110745141 chr4:110745141 stopgain 1.000 1 21 hm7G_associated_SNPs_1449 0 0 1 0 2 GAR1 chr4:110745189 5'GT 110745189 Upstream 49bp 1421 chr3 157155390 157155390 1 + G T LUSC 157155390 + 157155370 157155410 41 CAGATGAGAGAGCGCATGCTGCTGCAAGCCACGGACGACGT CAGATGAGAGAGCGCATGCTTCTGCAAGCCACGGACGACGT Direct Loss 0.973295434422592 0 NA NA prediction 0.946590868845184 Functional Loss - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157155390 chr3:157155390 synonymous SNV . 0 21 hm7G_associated_SNPs_1450 0 0 0 0 1 PTX3 chr3:157155302 3'AG 157155302 Downstream 89bp 1422 chr6 57037579 57037579 1 + G T SARC 57037579 + 57037559 57037599 41 GCTGACCGCTCCAGCCGCCTGCTGGAGAGCCTGGACCAGCT GCTGACCGCTCCAGCCGCCTTCTGGAGAGCCTGGACCAGCT Direct Loss 0.973278658211454 0 NA NA prediction 0.946557316422909 Functional Loss - BAG2 ENSG00000112208 CDS Human protein_coding chr6:57037579 chr6:57037579 synonymous SNV . 0 21 hm7G_associated_SNPs_1452 0 0 1 0 1 BAG2 chr6:57037608 5'GT 57037608 Upstream 30bp 1423 chr17 3397712 3397712 1 + G A rs149842031 3397712 + 3397692 3397732 41 AAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCT AAGTTGATTACCCCCGGGATAAAAATGGAGAAATTGCTGCT Direct Loss 0.973219419443245 0 NA NA prediction 0.94643883888649 Functional Loss - ASPA ENSG00000108381 CDS Human protein_coding chr17:3397712 chr17:3397712 nonsynonymous SNV 0.985 1 21 hm7G_associated_SNPs_1453 0 0 0 0 2 ASPA chr17:3397644 3'AG 3397644 Downstream 69bp 1424 chr17 3397712 3397712 1 + G A rs149842031 3397712 + 3397692 3397732 41 AAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCT AAGTTGATTACCCCCGGGATAAAAATGGAGAAATTGCTGCT Direct Loss 0.973219419443245 0 NA NA prediction 0.94643883888649 Functional Loss - ASPA ENSG00000108381 CDS Human protein_coding chr17:3397712 chr17:3397712 nonsynonymous SNV 0.985 1 21 hm7G_associated_SNPs_1453 0 0 0 0 2 ASPA chr17:3397753 5'GT 3397753 Upstream 42bp 1425 chr19 8386854 8386854 1 + G A BLCA 8386854 + 8386834 8386874 41 TAGGTGCGCGTGGAATTCATGGACGACACGAGCCGATCCAT TAGGTGCGCGTGGAATTCATAGACGACACGAGCCGATCCAT Direct Loss 0.973209771982206 0 NA NA prediction 0.946419543964413 Functional Loss - RPS28 ENSG00000233927 CDS Human protein_coding chr19:8386854 chr19:8386854 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1454 0 0 1 0 1 RPS28 chr19:8386837 3'AG 8386837 Downstream 18bp 1426 chr17 73016687 73016687 1 + G A BLCA 73016687 + 73016667 73016707 41 CTGCAGAAAATTCGAGACATGATCACTGAGGCCAGCCAGAC CTGCAGAAAATTCGAGACATAATCACTGAGGCCAGCCAGAC Direct Loss 0.97319086174369 0 NA NA prediction 0.94638172348738 Functional Loss - MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73016687 chr17:73016687 nonsynonymous SNV 0.948 0 21 hm7G_associated_SNPs_1457 0 0 1 0 1 MRPL58 chr17:73016752 5'GT 73016752 Upstream 66bp 1427 chrX 15822263 15822263 1 + G C BLCA 15822263 + 15822243 15822283 41 AAGGAACAATGGGAAGAACAGCAGAGGAAAGAGAGAGAAGA AAGGAACAATGGGAAGAACACCAGAGGAAAGAGAGAGAAGA Direct Loss 0.973177493117155 0 NA NA prediction 0.946354986234309 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15822263 chrX:15822263 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_1459 0 0 1 0 2 ZRSR2 chrX:15822234 3'AG 15822234 Downstream 30bp 1428 chrX 15822263 15822263 1 + G C BLCA 15822263 + 15822243 15822283 41 AAGGAACAATGGGAAGAACAGCAGAGGAAAGAGAGAGAAGA AAGGAACAATGGGAAGAACACCAGAGGAAAGAGAGAGAAGA Direct Loss 0.973177493117155 0 NA NA prediction 0.946354986234309 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15822263 chrX:15822263 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_1459 0 0 1 0 2 ZRSR2 chrX:15822320 5'GT 15822320 Upstream 58bp 1429 chr2 64109731 64109731 1 + G A LUSC 64109731 + 64109711 64109751 41 TGCAAAGGCCCTAAAAGTCTGATTGGTGTGAGGAATGAGAA TGCAAAGGCCCTAAAAGTCTAATTGGTGTGAGGAATGAGAA Direct Loss 0.973161181925421 0 NA NA prediction 0.946322363850841 Functional Loss - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64109731 chr2:64109731 synonymous SNV . 0 21 hm7G_associated_SNPs_1460 0 0 1 0 1 UGP2 chr2:64109785 5'GT 64109785 Upstream 55bp 1430 chr1 55273258 55273258 1 + G A CESC 55273258 + 55273238 55273278 41 TGCTTCAGCAAGAAGAAGCTGATGAAGGAGGTGGACACAGG TGCTTCAGCAAGAAGAAGCTAATGAAGGAGGTGGACACAGG Direct Loss 0.973158519608168 0 NA NA prediction 0.946317039216336 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55273258 chr1:55273258 synonymous SNV . 0 21 hm7G_associated_SNPs_1461 0 0 0 0 1 LEXM chr1:55273199 3'AG 55273199 Downstream 60bp 1431 chr6 24515458 24515458 1 + G T SARC 24515458 + 24515438 24515478 41 TTCCCTGTTCTCGAAAGAATGCCAAGGAAGTAGGGGAGGCA TTCCCTGTTCTCGAAAGAATTCCAAGGAAGTAGGGGAGGCA Direct Loss 0.972909390758109 0 NA NA prediction 0.945818781516219 Functional Loss - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24515458 chr6:24515458 nonsynonymous SNV 0.969 2 21 hm7G_associated_SNPs_1465 0 0 1 0 2 ALDH5A1 chr6:24515395 3'AG 24515395 Downstream 64bp 1432 chr6 24515458 24515458 1 + G T SARC 24515458 + 24515438 24515478 41 TTCCCTGTTCTCGAAAGAATGCCAAGGAAGTAGGGGAGGCA TTCCCTGTTCTCGAAAGAATTCCAAGGAAGTAGGGGAGGCA Direct Loss 0.972909390758109 0 NA NA prediction 0.945818781516219 Functional Loss - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24515458 chr6:24515458 nonsynonymous SNV 0.969 2 21 hm7G_associated_SNPs_1465 0 0 1 0 2 ALDH5A1 chr6:24515538 5'GT 24515538 Upstream 81bp 1433 chr20 42979392 42979392 1 + G A STAD 42979392 + 42979372 42979412 41 CAGCTGCAATAGCAACATGTGCTTCAAGGGGCTGAAATCCA CAGCTGCAATAGCAACATGTACTTCAAGGGGCTGAAATCCA Direct Loss 0.972851033078927 0 NA NA prediction 0.945702066157854 Functional Loss - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42979392 chr20:42979392 nonsynonymous SNV 0.106 4 21 hm7G_associated_SNPs_1466 0 0 0 0 1 R3HDML chr20:42979300 3'AG 42979300 Downstream 93bp 1434 chr4 122735121 122735121 1 + G A BLCA 122735121 + 122735101 122735141 41 ACTCTGAGAAGGAAGATGATGAAGGCGGTGGTGATCAAGCT ACTCTGAGAAGGAAGATGATAAAGGCGGTGGTGATCAAGCT Direct Loss 0.97283385750043 0 NA NA prediction 0.945667715000859 Functional Loss - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122735121 chr4:122735121 nonsynonymous SNV 0.797 0 21 hm7G_associated_SNPs_1467 0 0 1 2 1 EXOSC9 chr4:122735202 5'GT 122735202 Upstream 82bp 1435 chr15 76222276 76222276 1 + G A UCEC 76222276 + 76222256 76222296 41 CCTTGTCTTTGGTTATAATTGCTGTAAGGTGGGAGCCAGTA CCTTGTCTTTGGTTATAATTACTGTAAGGTGGGAGCCAGTA Direct Loss 0.972779937465757 0 NA NA prediction 0.945559874931514 Functional Loss - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76222276 chr15:76222276 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1469 0 0 1 0 1 FBXO22 chr15:76222225 3'AG 76222225 Downstream 52bp 1436 chr5 76259212 76259212 1 + G A LGG 76259212 + 76259192 76259232 41 ATAGGAGACTTTGTGGAGCTGCTGGGAGGAACTGGATTGGA ATAGGAGACTTTGTGGAGCTACTGGGAGGAACTGGATTGGA Direct Loss 0.97273722220919 0 NA NA prediction 0.945474444418381 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76259212 chr5:76259212 synonymous SNV . 0 21 hm7G_associated_SNPs_1470 0 0 0 0 2 CRHBP chr5:76259168 3'AG 76259168 Downstream 45bp 1437 chr5 76259212 76259212 1 + G A LGG 76259212 + 76259192 76259232 41 ATAGGAGACTTTGTGGAGCTGCTGGGAGGAACTGGATTGGA ATAGGAGACTTTGTGGAGCTACTGGGAGGAACTGGATTGGA Direct Loss 0.97273722220919 0 NA NA prediction 0.945474444418381 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76259212 chr5:76259212 synonymous SNV . 0 21 hm7G_associated_SNPs_1470 0 0 0 0 2 CRHBP chr5:76259285 5'GT 76259285 Upstream 74bp 1438 chr20 44433951 44433951 1 + G T UCEC 44433951 + 44433931 44433971 41 CTTTTACTTTTCAGAGCCCTGGGGATGGGGGGCACCAGAGG CTTTTACTTTTCAGAGCCCTTGGGATGGGGGGCACCAGAGG Direct Loss 0.972679831704461 0 NA NA prediction 0.945359663408923 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44433951 chr20:44433951 synonymous SNV . 0 21 hm7G_associated_SNPs_1471 0 0 1 0 2 DNTTIP1 chr20:44433945 3'AG 44433945 Downstream 7bp 1439 chr20 44433951 44433951 1 + G T UCEC 44433951 + 44433931 44433971 41 CTTTTACTTTTCAGAGCCCTGGGGATGGGGGGCACCAGAGG CTTTTACTTTTCAGAGCCCTTGGGATGGGGGGCACCAGAGG Direct Loss 0.972679831704461 0 NA NA prediction 0.945359663408923 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44433951 chr20:44433951 synonymous SNV . 0 21 hm7G_associated_SNPs_1471 0 0 1 0 2 DNTTIP1 chr20:44434005 5'GT 44434005 Upstream 55bp 1440 chr7 2418774 2418774 1 + G C OV 2418774 + 2418754 2418794 41 CAACCTCATGCATAGGAATTGGTGGAGAGAAGGCGCACCAT CAACCTCATGCATAGGAATTCGTGGAGAGAAGGCGCACCAT Direct Loss 0.972670949552529 0 NA NA prediction 0.945341899105058 Functional Loss - EIF3B ENSG00000106263 CDS Human protein_coding chr7:2418774 chr7:2418774 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_1472 0 0 1 0 1 EIF3B chr7:2418769 3'AG 2418769 Downstream 6bp 1441 chr10 105139422 105139422 1 + G T HNSC 105139422 + 105139402 105139442 41 TACCTTTGGATGACGAGGATGAAGAGGGAGAAAATGAAGAA TACCTTTGGATGACGAGGATTAAGAGGGAGAAAATGAAGAA Direct Loss 0.972589111509959 0 NA NA prediction 0.945178223019918 Functional Loss - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105139422 chr10:105139422 stopgain 1.000 1 21 hm7G_associated_SNPs_1474 0 0 1 0 1 TAF5 chr10:105139365 3'AG 105139365 Downstream 58bp 1442 chr20 44567887 44567887 1 + G T LUAD 44567887 + 44567867 44567907 41 TGCAGGCTGGGAGAAGTGCTGGAGCCGGAGGGAGAATCGTC TGCAGGCTGGGAGAAGTGCTTGAGCCGGAGGGAGAATCGTC Direct Loss 0.972554952321011 0 NA NA prediction 0.945109904642023 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44567887 chr20:44567887 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_1477 0 0 0 0 2 PCIF1 chr20:44567854 3'AG 44567854 Downstream 34bp 1443 chr20 44567887 44567887 1 + G T LUAD 44567887 + 44567867 44567907 41 TGCAGGCTGGGAGAAGTGCTGGAGCCGGAGGGAGAATCGTC TGCAGGCTGGGAGAAGTGCTTGAGCCGGAGGGAGAATCGTC Direct Loss 0.972554952321011 0 NA NA prediction 0.945109904642023 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44567887 chr20:44567887 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_1477 0 0 0 0 2 PCIF1 chr20:44567978 5'GT 44567978 Upstream 92bp 1444 chr12 120876032 120876032 1 + G T COAD 120876032 + 120876012 120876052 41 CCCATGGCGAAGAGGGCTCAGGTACTGGGGCCGGGGTCGAC CCCATGGCGAAGAGGGCTCATGTACTGGGGCCGGGGTCGAC Direct Loss 0.972525170544088 0 NA NA prediction 0.945050341088176 Functional Loss - COX6A1 ENSG00000111775;ENSG00000111780 CDS Human other chr12:120876032 chr12:120876032 nonsynonymous SNV 0.984 1 21 hm7G_associated_SNPs_1479 0 0 1 0 1 COX6A1 chr12:120876032 5'GT 120876032 Upstream 1bp 1445 chr3 101311529 101311529 1 + G A BLCA 101311529 + 101311509 101311549 41 AAGGAAAGCATGGGTTTTCTGATAACCAGAAGCTGTGGGAG AAGGAAAGCATGGGTTTTCTAATAACCAGAAGCTGTGGGAG Direct Loss 0.972469279078145 0 NA NA prediction 0.94493855815629 Functional Loss - PCNP ENSG00000081154 CDS Human protein_coding chr3:101311529 chr3:101311529 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1481 0 0 1 1 1 PCNP chr3:101311471 3'AG 101311471 Downstream 59bp 1446 chr5 135394834 135394834 1 + G T HNSC 135394834 + 135394814 135394854 41 CACATTGGTGATGAAATCCTGGTTAGCGGAGGCATCGGGGC CACATTGGTGATGAAATCCTTGTTAGCGGAGGCATCGGGGC Direct Loss 0.972431662167941 0 NA NA prediction 0.944863324335883 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135394834 chr5:135394834 synonymous SNV . 0 21 hm7G_associated_SNPs_1482 0 0 1 0 2 TGFBI chr5:135394779 3'AG 135394779 Downstream 56bp 1447 chr5 135394834 135394834 1 + G T HNSC 135394834 + 135394814 135394854 41 CACATTGGTGATGAAATCCTGGTTAGCGGAGGCATCGGGGC CACATTGGTGATGAAATCCTTGTTAGCGGAGGCATCGGGGC Direct Loss 0.972431662167941 0 NA NA prediction 0.944863324335883 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135394834 chr5:135394834 synonymous SNV . 0 21 hm7G_associated_SNPs_1482 0 0 1 0 2 TGFBI chr5:135394903 5'GT 135394903 Upstream 70bp 1448 chr10 85912074 85912074 1 + G A COAD 85912074 + 85912054 85912094 41 TTTATGCGAGTTGCAACTATGCTGGCAACTGGAGGCAACAG TTTATGCGAGTTGCAACTATACTGGCAACTGGAGGCAACAG Direct Loss 0.972402115058017 0 NA NA prediction 0.944804230116034 Functional Loss - GHITM ENSG00000165678 CDS Human protein_coding chr10:85912074 chr10:85912074 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_1483 0 0 1 0 1 GHITM chr10:85912020 3'AG 85912020 Downstream 55bp 1449 chr9 135933278 135933278 1 + G T HNSC 135933278 + 135933258 135933298 41 CTGGGGAAGACGAGGAGGATGAGGAGGAGGAGGAAGAGGAG CTGGGGAAGACGAGGAGGATTAGGAGGAGGAGGAAGAGGAG Direct Loss 0.972396998647343 0 NA NA prediction 0.944793997294686 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135933278 chr9:135933278 stopgain 0.185 0 21 hm7G_associated_SNPs_1484 0 0 1 0 1 GTF3C5 chr9:135933201 3'AG 135933201 Downstream 78bp 1450 chr20 31436496 31436496 1 + G A LUAD 31436496 + 31436476 31436516 41 AGGAAGGCTTTGTGATACCTGATGAAGGGGGCCCACAGGAG AGGAAGGCTTTGTGATACCTAATGAAGGGGGCCCACAGGAG Direct Loss 0.972388755680016 0 NA NA prediction 0.944777511360031 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31436496 chr20:31436496 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1485 0 0 1 0 1 MAPRE1 chr20:31436478 3'AG 31436478 Downstream 19bp 1451 chr7 56128520 56128520 1 + G T LUSC 56128520 + 56128500 56128540 41 GCTGTGTGGTTCCAGGTGCTGGTGCCGTGGAAGTGGCAATG GCTGTGTGGTTCCAGGTGCTTGTGCCGTGGAAGTGGCAATG Direct Loss 0.972324113313724 0 NA NA prediction 0.944648226627449 Functional Loss - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56128520 chr7:56128520 nonsynonymous SNV 0.991 5 21 hm7G_associated_SNPs_1486 0 0 1 0 1 CCT6A chr7:56128500 3'AG 56128500 Downstream 21bp 1452 chrX 128922505 128922505 1 + G C UCEC 128922505 + 128922485 128922525 41 GCAGTGATTTCCCGAACCATGAACAGGAAGATGGGCAAGAT GCAGTGATTTCCCGAACCATCAACAGGAAGATGGGCAAGAT Direct Loss 0.972323037919584 0 NA NA prediction 0.944646075839168 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128922505 chrX:128922505 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1487 0 0 0 0 2 SASH3 chrX:128922407 3'AG 128922407 Downstream 99bp 1453 chrX 128922505 128922505 1 + G C UCEC 128922505 + 128922485 128922525 41 GCAGTGATTTCCCGAACCATGAACAGGAAGATGGGCAAGAT GCAGTGATTTCCCGAACCATCAACAGGAAGATGGGCAAGAT Direct Loss 0.972323037919584 0 NA NA prediction 0.944646075839168 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128922505 chrX:128922505 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1487 0 0 0 0 2 SASH3 chrX:128922553 5'GT 128922553 Upstream 49bp 1454 chr8 72755880 72755880 1 - C T LUSC 72755880 - 72755860 72755900 41 TACGTGCACCCAGTGAACCTGGTAGGGGCGCGGCGCGCAAG TACGTGCACCCAGTGAACCTAGTAGGGGCGCGGCGCGCAAG Direct Loss 0.972314555291933 0 NA NA prediction 0.944629110583866 Functional Loss - MSC ENSG00000178860;ENSG00000235531 CDS Human other chr8:72755880 chr8:72755880 stopgain . 0 21 hm7G_associated_SNPs_1488 0 0 0 0 1 MSC chr8:72755880 5'GT 72755880 Upstream 1bp 1455 chr9 100777666 100777666 1 + G T UCEC 100777666 + 100777646 100777686 41 AGGAGGAAGAAGGTGGGAAAGGTGAAAAGAGGAAGAGAGAA AGGAGGAAGAAGGTGGGAAATGTGAAAAGAGGAAGAGAGAA Direct Loss 0.972268278773524 0 NA NA prediction 0.944536557547048 Functional Loss - ANP32B ENSG00000136938 CDS Human protein_coding chr9:100777666 chr9:100777666 nonsynonymous SNV 0.832 4 21 hm7G_associated_SNPs_1491 0 0 1 0 1 ANP32B chr9:100777646 3'AG 100777646 Downstream 21bp 1456 chr12 120650198 120650198 1 + G C HNSC 120650198 + 120650178 120650218 41 GTGCCCTTGTTGAGCTGCTTGAGGCAGAAGGCACAGACGAA GTGCCCTTGTTGAGCTGCTTCAGGCAGAAGGCACAGACGAA Direct Loss 0.972258879021522 0 NA NA prediction 0.944517758043045 Functional Loss - PXN ENSG00000089159 CDS Human protein_coding chr12:120650198 chr12:120650198 synonymous SNV . 0 21 hm7G_associated_SNPs_1492 0 0 1 0 1 PXN chr12:120650178 3'AG 120650178 Downstream 21bp 1457 chr10 101502959 101502959 1 + G T ESCA 101502959 + 101502939 101502979 41 CAGATCCCAGTTTTTGTGATGATTCGGCCACGGGGAGGTGA CAGATCCCAGTTTTTGTGATTATTCGGCCACGGGGAGGTGA Direct Loss 0.972252234099481 0 NA NA prediction 0.944504468198962 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101502959 chr10:101502959 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_1493 0 0 1 0 1 CUTC chr10:101502910 3'AG 101502910 Downstream 50bp 1458 chr7 128845123 128845123 1 + G T THYM 128845123 + 128845103 128845143 41 GACAGACAACCCCAAGAGCTGGTACGAGGACGTGGAGGGCT GACAGACAACCCCAAGAGCTTGTACGAGGACGTGGAGGGCT Direct Loss 0.972229191071025 0 NA NA prediction 0.94445838214205 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128845123 chr7:128845123 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1494 0 0 1 0 1 SMO chr7:128845044 3'AG 128845044 Downstream 80bp 1459 chr5 134345111 134345111 1 + G A COAD 134345111 + 134345091 134345131 41 ATGTTGGAGCAGCAGGAGATGCTCATGGGAGAGAAGCAGGT ATGTTGGAGCAGCAGGAGATACTCATGGGAGAGAAGCAGGT Direct Loss 0.972226804218782 0 NA NA prediction 0.944453608437564 Functional Loss - CATSPER3 ENSG00000152705 CDS Human protein_coding chr5:134345111 chr5:134345111 nonsynonymous SNV 0.007 1 21 hm7G_associated_SNPs_1495 0 0 0 0 2 CATSPER3 chr5:134345061 3'AG 134345061 Downstream 51bp 1460 chr5 134345111 134345111 1 + G A COAD 134345111 + 134345091 134345131 41 ATGTTGGAGCAGCAGGAGATGCTCATGGGAGAGAAGCAGGT ATGTTGGAGCAGCAGGAGATACTCATGGGAGAGAAGCAGGT Direct Loss 0.972226804218782 0 NA NA prediction 0.944453608437564 Functional Loss - CATSPER3 ENSG00000152705 CDS Human protein_coding chr5:134345111 chr5:134345111 nonsynonymous SNV 0.007 1 21 hm7G_associated_SNPs_1495 0 0 0 0 2 CATSPER3 chr5:134345180 5'GT 134345180 Upstream 70bp 1461 chr5 64872720 64872720 1 + G A UCEC 64872720 + 64872700 64872740 41 TCCTAGATGTTTACTGAACTGCAACAGATGAGGCAACAGTT TCCTAGATGTTTACTGAACTACAACAGATGAGGCAACAGTT Direct Loss 0.972166828239295 0 NA NA prediction 0.94433365647859 Functional Loss - PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64872720 chr5:64872720 synonymous SNV . 0 21 hm7G_associated_SNPs_1497 0 0 1 0 1 PPWD1 chr5:64872706 3'AG 64872706 Downstream 15bp 1462 chr20 44574444 44574444 1 + G C BLCA 44574444 + 44574424 44574464 41 CCCATGCCCAGCGTGGAGATGCACATGGAGAACAACGTGGT CCCATGCCCAGCGTGGAGATCCACATGGAGAACAACGTGGT Direct Loss 0.972157040852339 0 NA NA prediction 0.944314081704678 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44574444 chr20:44574444 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1498 0 0 0 0 2 PCIF1 chr20:44574350 3'AG 44574350 Downstream 95bp 1463 chr20 44574444 44574444 1 + G C BLCA 44574444 + 44574424 44574464 41 CCCATGCCCAGCGTGGAGATGCACATGGAGAACAACGTGGT CCCATGCCCAGCGTGGAGATCCACATGGAGAACAACGTGGT Direct Loss 0.972157040852339 0 NA NA prediction 0.944314081704678 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44574444 chr20:44574444 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1498 0 0 0 0 2 PCIF1 chr20:44574522 5'GT 44574522 Upstream 79bp 1464 chr12 56364906 56364906 1 + G T UCEC 56364906 + 56364886 56364926 41 TTCGGACTCTGGGGACCCCAGATGAGGTGGTGTGGCCAGGA TTCGGACTCTGGGGACCCCATATGAGGTGGTGTGGCCAGGA Direct Loss 0.972132859149725 0 NA NA prediction 0.944265718299451 Functional Loss - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56364906 chr12:56364906 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1499 0 0 1 0 1 CDK2 chr12:56364828 3'AG 56364828 Downstream 79bp 1465 chr1 16693726 16693726 1 + G A rs572864283 16693726 + 16693706 16693746 41 CGCAGGCGCGGGGAGGGGGTGGGGGAGGAGGGAAAGCGGCG CGCAGGCGCGGGGAGGGGGTAGGGGAGGAGGGAAAGCGGCG Direct Loss 0.972118987775142 0 NA NA prediction 0.944237975550284 Functional Loss - SZRD1 ENSG00000055070 UTR5 Human protein_coding chr1:16693726 chr1:16693726 . . 0 21 hm7G_associated_SNPs_1500 0 0 1 0 1 SZRD1 chr1:16693803 5'GT 16693803 Upstream 78bp 1466 chr17 38126810 38126810 1 + G A SKCM 38126810 + 38126790 38126830 41 CTGTATGTGGTGATGGAGGTGGTGGAGACGGTGCAGGAGGT CTGTATGTGGTGATGGAGGTAGTGGAGACGGTGCAGGAGGT Direct Loss 0.972111268189307 0 NA NA prediction 0.944222536378615 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38126810 chr17:38126810 synonymous SNV . 0 21 hm7G_associated_SNPs_1501 0 0 0 0 2 GSDMA chr17:38126735 3'AG 38126735 Downstream 76bp 1467 chr17 38126810 38126810 1 + G A SKCM 38126810 + 38126790 38126830 41 CTGTATGTGGTGATGGAGGTGGTGGAGACGGTGCAGGAGGT CTGTATGTGGTGATGGAGGTAGTGGAGACGGTGCAGGAGGT Direct Loss 0.972111268189307 0 NA NA prediction 0.944222536378615 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38126810 chr17:38126810 synonymous SNV . 0 21 hm7G_associated_SNPs_1501 0 0 0 0 2 GSDMA chr17:38126900 5'GT 38126900 Upstream 91bp 1468 chr1 17607195 17607195 1 + G T SARC 17607195 + 17607175 17607215 41 GACTGGAACCGTGAGGTGCTGAAGCGGGAGCTGGGCCTGGC GACTGGAACCGTGAGGTGCTTAAGCGGGAGCTGGGCCTGGC Direct Loss 0.972053877354195 0 NA NA prediction 0.944107754708391 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17607195 chr1:17607195 synonymous SNV . 0 21 hm7G_associated_SNPs_1503 0 0 0 0 2 PADI3 chr1:17607166 3'AG 17607166 Downstream 30bp 1469 chr1 17607195 17607195 1 + G T SARC 17607195 + 17607175 17607215 41 GACTGGAACCGTGAGGTGCTGAAGCGGGAGCTGGGCCTGGC GACTGGAACCGTGAGGTGCTTAAGCGGGAGCTGGGCCTGGC Direct Loss 0.972053877354195 0 NA NA prediction 0.944107754708391 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17607195 chr1:17607195 synonymous SNV . 0 21 hm7G_associated_SNPs_1503 0 0 0 0 2 PADI3 chr1:17607291 5'GT 17607291 Upstream 97bp 1470 chr11 66813240 66813240 1 + G T KIRC 66813240 + 66813220 66813260 41 TTCGTCAAGGTGTACCTGCTGCAGGATGGGAGGAAGATGAG TTCGTCAAGGTGTACCTGCTTCAGGATGGGAGGAAGATGAG Direct Loss 0.972028810384272 0 NA NA prediction 0.944057620768544 Functional Loss - SYT12 ENSG00000173227 CDS Human protein_coding chr11:66813240 chr11:66813240 synonymous SNV . 0 21 hm7G_associated_SNPs_1504 0 0 1 0 1 SYT12 chr11:66813215 3'AG 66813215 Downstream 26bp 1471 chr4 146563573 146563573 1 + G T ACC 146563573 + 146563553 146563593 41 ATAGAATATTTTGGAAAAATGCTTACTGAGAGAGGGCACAA ATAGAATATTTTGGAAAAATTCTTACTGAGAGAGGGCACAA Direct Loss 0.972024001645877 0 NA NA prediction 0.944048003291754 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146563573 chr4:146563573 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1505 0 0 0 3 2 MMAA chr4:146563515 3'AG 146563515 Downstream 59bp 1472 chr4 146563573 146563573 1 + G T ACC 146563573 + 146563553 146563593 41 ATAGAATATTTTGGAAAAATGCTTACTGAGAGAGGGCACAA ATAGAATATTTTGGAAAAATTCTTACTGAGAGAGGGCACAA Direct Loss 0.972024001645877 0 NA NA prediction 0.944048003291754 Functional Loss - MMAA ENSG00000151611 CDS Human protein_coding chr4:146563573 chr4:146563573 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1505 0 0 0 3 2 MMAA chr4:146563637 5'GT 146563637 Upstream 65bp 1473 chr11 64699068 64699068 1 + G C LIHC 64699068 + 64699048 64699088 41 CAAATACTGGCCAAAAACCTGCACCCAGAAGGAGGTATGAA CAAATACTGGCCAAAAACCTCCACCCAGAAGGAGGTATGAA Direct Loss 0.971980132497034 0 NA NA prediction 0.943960264994067 Functional Loss - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64699068 chr11:64699068 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1507 0 0 0 0 2 PPP2R5B chr11:64699031 3'AG 64699031 Downstream 38bp 1474 chr11 64699068 64699068 1 + G C LIHC 64699068 + 64699048 64699088 41 CAAATACTGGCCAAAAACCTGCACCCAGAAGGAGGTATGAA CAAATACTGGCCAAAAACCTCCACCCAGAAGGAGGTATGAA Direct Loss 0.971980132497034 0 NA NA prediction 0.943960264994067 Functional Loss - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64699068 chr11:64699068 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1507 0 0 0 0 2 PPP2R5B chr11:64699081 5'GT 64699081 Upstream 14bp 1475 chr19 13888913 13888913 1 + G A BLCA 13888913 + 13888893 13888933 41 ATCGAACATGACGTGGTGATGAAAGCCAGCAGCAGCCTGCC ATCGAACATGACGTGGTGATAAAAGCCAGCAGCAGCCTGCC Direct Loss 0.971950875296768 0 NA NA prediction 0.943901750593537 Functional Loss - C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13888913 chr19:13888913 nonsynonymous SNV 0.710 1 21 hm7G_associated_SNPs_1508 0 0 1 0 1 C19orf53 chr19:13888866 3'AG 13888866 Downstream 48bp 1476 chr19 50185172 50185172 1 + G T BLCA 50185172 + 50185152 50185192 41 CCATTCTTGCCCTAGGAGATGCTGAAGGACGAGGTGCGCAC CCATTCTTGCCCTAGGAGATTCTGAAGGACGAGGTGCGCAC Direct Loss 0.971936065360107 0 NA NA prediction 0.943872130720213 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50185172 chr19:50185172 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_1509 0 0 1 0 1 PRMT1 chr19:50185167 3'AG 50185167 Downstream 6bp 1477 chr6 35716402 35716402 1 + G T UCEC 35716402 + 35716382 35716422 41 TGTTTGCTGAGCGGCTGAGTGAGGGCCGGAACGCACCCCAC TGTTTGCTGAGCGGCTGAGTTAGGGCCGGAACGCACCCCAC Direct Loss 0.971932617392926 0 NA NA prediction 0.943865234785852 Functional Loss - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35716402 chr6:35716402 stopgain 0.895 1 21 hm7G_associated_SNPs_1510 0 0 0 0 2 ARMC12 chr6:35716315 3'AG 35716315 Downstream 88bp 1478 chr6 35716402 35716402 1 + G T UCEC 35716402 + 35716382 35716422 41 TGTTTGCTGAGCGGCTGAGTGAGGGCCGGAACGCACCCCAC TGTTTGCTGAGCGGCTGAGTTAGGGCCGGAACGCACCCCAC Direct Loss 0.971932617392926 0 NA NA prediction 0.943865234785852 Functional Loss - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35716402 chr6:35716402 stopgain 0.895 1 21 hm7G_associated_SNPs_1510 0 0 0 0 2 ARMC12 chr6:35716345 3'AG 35716345 Downstream 58bp 1479 chr19 54710154 54710154 1 + G C rs112444181 54710154 + 54710134 54710174 41 CTCTTCCCAGGCAACGCCCTGCTGCGGCGGCTGGTCCGCAT CTCTTCCCAGGCAACGCCCTCCTGCGGCGGCTGGTCCGCAT Direct Loss 0.971804672803236 0 NA NA prediction 0.943609345606472 Functional Loss - RPS9 ENSG00000170889 CDS Human protein_coding chr19:54710154 chr19:54710154 synonymous SNV . 0 21 hm7G_associated_SNPs_1513 0 0 1 0 1 RPS9 chr19:54710144 3'AG 54710144 Downstream 11bp 1480 chr1 166810229 166810229 1 + G A CESC 166810229 + 166810209 166810249 41 TACCCTCTCAATTTGAGCCTGAAAGAAGAGGAAGAGGAAGA TACCCTCTCAATTTGAGCCTAAAAGAAGAGGAAGAGGAAGA Direct Loss 0.971755857082519 0 NA NA prediction 0.943511714165038 Functional Loss - POGK ENSG00000143157 CDS Human protein_coding chr1:166810229 chr1:166810229 synonymous SNV . 0 21 hm7G_associated_SNPs_1516 0 0 1 0 2 POGK chr1:166810192 3'AG 166810192 Downstream 38bp 1481 chr1 166810229 166810229 1 + G A CESC 166810229 + 166810209 166810249 41 TACCCTCTCAATTTGAGCCTGAAAGAAGAGGAAGAGGAAGA TACCCTCTCAATTTGAGCCTAAAAGAAGAGGAAGAGGAAGA Direct Loss 0.971755857082519 0 NA NA prediction 0.943511714165038 Functional Loss - POGK ENSG00000143157 CDS Human protein_coding chr1:166810229 chr1:166810229 synonymous SNV . 0 21 hm7G_associated_SNPs_1516 0 0 1 0 2 POGK chr1:166810325 5'GT 166810325 Upstream 97bp 1482 chr12 54382990 54382990 1 + G A LIHC 54382990 + 54382970 54383010 41 AACACCACAGGAAATTGGCTGACAGCAAAGAGCGGAAGGAA AACACCACAGGAAATTGGCTAACAGCAAAGAGCGGAAGGAA Direct Loss 0.971746020816526 0 NA NA prediction 0.943492041633052 Functional Loss - HOXC10 ENSG00000180818 CDS Human protein_coding chr12:54382990 chr12:54382990 synonymous SNV . 0 21 hm7G_associated_SNPs_1517 0 0 1 0 1 HOXC10 chr12:54382953 3'AG 54382953 Downstream 38bp 1483 chr5 36679789 36679789 1 + G C LUSC 36679789 + 36679769 36679809 41 ATTGTGGAGATGGAAGACATGGGTGTGATTGGGGGGCAGCT ATTGTGGAGATGGAAGACATCGGTGTGATTGGGGGGCAGCT Direct Loss 0.971695449853608 0 NA NA prediction 0.943390899707216 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36679789 chr5:36679789 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_1520 0 0 1 0 1 SLC1A3 chr5:36679729 3'AG 36679729 Downstream 61bp 1484 chr12 58009631 58009631 1 + G T BLCA 58009631 + 58009611 58009651 41 CCAATTCAGGTGAGCTGCCTGGGACTGGAGGGGAACCTCCA CCAATTCAGGTGAGCTGCCTTGGACTGGAGGGGAACCTCCA Direct Loss 0.971661326168524 0 NA NA prediction 0.943322652337047 Functional Loss - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58009631 chr12:58009631 synonymous SNV . 0 21 hm7G_associated_SNPs_1521 0 0 1 0 1 ARHGEF25 chr12:58009620 3'AG 58009620 Downstream 12bp 1485 chr3 101293108 101293108 1 + G C rs200604475 101293108 + 101293088 101293128 41 AGCCTGAAAAGTCGCAGCGAGCTGGAGCCGCCGGAGGTGAA AGCCTGAAAAGTCGCAGCGACCTGGAGCCGCCGGAGGTGAA Direct Loss 0.971646830224577 0 NA NA prediction 0.943293660449153 Functional Loss - PCNP ENSG00000081154 CDS Human protein_coding chr3:101293108 chr3:101293108 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1522 0 0 1 0 1 PCNP chr3:101293123 5'GT 101293123 Upstream 16bp 1486 chr19 49422337 49422337 1 + G T LUSC 49422337 + 49422317 49422357 41 GAGGACGACATGCGGGAGATGGAGGAGGAGCGACTGCGCAT GAGGACGACATGCGGGAGATTGAGGAGGAGCGACTGCGCAT Direct Loss 0.971625268328958 0 NA NA prediction 0.943250536657916 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422337 chr19:49422337 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_1523 0 0 1 0 2 NUCB1 chr19:49422287 3'AG 49422287 Downstream 51bp 1487 chr19 49422337 49422337 1 + G T LUSC 49422337 + 49422317 49422357 41 GAGGACGACATGCGGGAGATGGAGGAGGAGCGACTGCGCAT GAGGACGACATGCGGGAGATTGAGGAGGAGCGACTGCGCAT Direct Loss 0.971625268328958 0 NA NA prediction 0.943250536657916 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422337 chr19:49422337 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_1523 0 0 1 0 2 NUCB1 chr19:49422379 5'GT 49422379 Upstream 43bp 1488 chr2 27669194 27669194 1 + G C LUAD 27669194 + 27669174 27669214 41 GCTGGGTGTGACGCAAGAGTGAAACAGAAAGCCTGGCAGCC GCTGGGTGTGACGCAAGAGTCAAACAGAAAGCCTGGCAGCC Direct Loss 0.971586605684141 0 NA NA prediction 0.943173211368281 Functional Loss - IFT172 ENSG00000138002 CDS Human protein_coding chr2:27669194 chr2:27669194 stopgain 0.903 1 21 hm7G_associated_SNPs_1525 0 0 0 0 1 IFT172 chr2:27669168 3'AG 27669168 Downstream 27bp 1489 chr22 35782716 35782716 1 + G A UCEC 35782716 + 35782696 35782736 41 TACCACATCTATGTGGCCCTGGAGGAGGAGATTGAGCGCAA TACCACATCTATGTGGCCCTAGAGGAGGAGATTGAGCGCAA Direct Loss 0.971544189972725 0 NA NA prediction 0.94308837994545 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35782716 chr22:35782716 synonymous SNV . 0 21 hm7G_associated_SNPs_1526 0 0 1 0 1 HMOX1 chr22:35782678 3'AG 35782678 Downstream 39bp 1490 chr19 49422373 49422373 1 + G A BLCA 49422373 + 49422353 49422393 41 CGCATGCGGGAGCATGTGATGAAGAATGTGAGGTGGGGGCC CGCATGCGGGAGCATGTGATAAAGAATGTGAGGTGGGGGCC Direct Loss 0.971514858017377 0 NA NA prediction 0.943029716034755 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422373 chr19:49422373 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1527 0 0 1 0 2 NUCB1 chr19:49422287 3'AG 49422287 Downstream 87bp 1491 chr19 49422373 49422373 1 + G A BLCA 49422373 + 49422353 49422393 41 CGCATGCGGGAGCATGTGATGAAGAATGTGAGGTGGGGGCC CGCATGCGGGAGCATGTGATAAAGAATGTGAGGTGGGGGCC Direct Loss 0.971514858017377 0 NA NA prediction 0.943029716034755 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422373 chr19:49422373 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1527 0 0 1 0 2 NUCB1 chr19:49422379 5'GT 49422379 Upstream 7bp 1492 chr14 20978672 20978672 1 + G T SARC 20978672 + 20978652 20978692 41 ATCTTTTTCATGTTGCTGATGCTGCTGCTGGGCCTGGGGAT ATCTTTTTCATGTTGCTGATTCTGCTGCTGGGCCTGGGGAT Direct Loss 0.971510963279363 0 NA NA prediction 0.943021926558725 Functional Loss - RNASE10 ENSG00000182545 CDS Human protein_coding chr14:20978672 chr14:20978672 nonsynonymous SNV 0.875 1 21 hm7G_associated_SNPs_1528 0 0 0 0 1 RNASE10 chr14:20978626 3'AG 20978626 Downstream 47bp 1493 chr15 44058127 44058127 1 + G T OV 44058127 + 44058107 44058147 41 ACAGAAGACAATAAAGATTTGATACAGGGCAAGGACTTACT ACAGAAGACAATAAAGATTTTATACAGGGCAAGGACTTACT Direct Loss 0.971475944605178 0 NA NA prediction 0.942951889210357 Functional Loss - PDIA3 ENSG00000167004 CDS Human protein_coding chr15:44058127 chr15:44058127 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1529 0 0 0 0 2 PDIA3 chr15:44058085 3'AG 44058085 Downstream 43bp 1494 chr15 44058127 44058127 1 + G T OV 44058127 + 44058107 44058147 41 ACAGAAGACAATAAAGATTTGATACAGGGCAAGGACTTACT ACAGAAGACAATAAAGATTTTATACAGGGCAAGGACTTACT Direct Loss 0.971475944605178 0 NA NA prediction 0.942951889210357 Functional Loss - PDIA3 ENSG00000167004 CDS Human protein_coding chr15:44058127 chr15:44058127 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1529 0 0 0 0 2 PDIA3 chr15:44058210 5'GT 44058210 Upstream 84bp 1495 chr18 8624996 8624996 1 + G T UCEC 8624996 + 8624976 8625016 41 GAAAATTAGATTACAGATCTGGTAAGTGGGAGAGTGTGCAC GAAAATTAGATTACAGATCTTGTAAGTGGGAGAGTGTGCAC Direct Loss 0.971345398739591 0 NA NA prediction 0.942690797479183 Functional Loss - RAB12 ENSG00000206418 CDS Human protein_coding chr18:8624996 chr18:8624996 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_1533 0 0 1 0 2 RAB12 chr18:8624936 3'AG 8624936 Downstream 61bp 1496 chr18 8624996 8624996 1 + G T UCEC 8624996 + 8624976 8625016 41 GAAAATTAGATTACAGATCTGGTAAGTGGGAGAGTGTGCAC GAAAATTAGATTACAGATCTTGTAAGTGGGAGAGTGTGCAC Direct Loss 0.971345398739591 0 NA NA prediction 0.942690797479183 Functional Loss - RAB12 ENSG00000206418 CDS Human protein_coding chr18:8624996 chr18:8624996 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_1533 0 0 1 0 2 RAB12 chr18:8624996 5'GT 8624996 Upstream 1bp 1497 chr22 29695623 29695623 1 + G A COAD 29695623 + 29695603 29695643 41 AGAGGTGGCCCTGGTGGCATGCGGGGAGGAAGAGGTGGCCT AGAGGTGGCCCTGGTGGCATACGGGGAGGAAGAGGTGGCCT Direct Loss 0.97124848124708 0 NA NA prediction 0.94249696249416 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695623 chr22:29695623 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1535 0 0 1 0 1 EWSR1 chr22:29695589 3'AG 29695589 Downstream 35bp 1498 chrX 75397483 75397483 1 + G A UCEC 75397483 + 75397463 75397503 41 AATTCTTTGCCATTGAAATTGCTCGGAACCGGGAAGGCTAT AATTCTTTGCCATTGAAATTACTCGGAACCGGGAAGGCTAT Direct Loss 0.971232375056543 0 NA NA prediction 0.942464750113087 Functional Loss - PBDC1 ENSG00000102390 CDS Human protein_coding chrX:75397483 chrX:75397483 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1536 0 0 1 0 1 PBDC1 chrX:75397451 3'AG 75397451 Downstream 33bp 1499 chr5 145719138 145719138 1 + G C BLCA 145719138 + 145719118 145719158 41 GTAATATATTTGGAAGCTTTGATGAGAGCCTGCTGGCACGC GTAATATATTTGGAAGCTTTCATGAGAGCCTGCTGGCACGC Direct Loss 0.971230448392453 0 NA NA prediction 0.942460896784906 Functional Loss - POU4F3 ENSG00000091010 CDS Human protein_coding chr5:145719138 chr5:145719138 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1537 0 0 0 0 1 POU4F3 chr5:145719111 3'AG 145719111 Downstream 28bp 1500 chr16 89259990 89259990 1 + G A UCEC 89259990 + 89259970 89260010 41 AATGTCCTCAACTACGATGAGCAAGGAGGCGGGGAGGAGGA AATGTCCTCAACTACGATGAACAAGGAGGCGGGGAGGAGGA Direct Loss 0.971167654525295 0 NA NA prediction 0.94233530905059 Functional Loss - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89259990 chr16:89259990 synonymous SNV . 0 21 hm7G_associated_SNPs_1538 0 0 0 0 1 CDH15 chr16:89260014 5'GT 89260014 Upstream 25bp 1501 chr19 33072194 33072194 1 + G A BLCA 33072194 + 33072174 33072214 41 GACGAGGAGCTTGAGGCGCTGAGGAGACAGAGGCTGGCCGA GACGAGGAGCTTGAGGCGCTAAGGAGACAGAGGCTGGCCGA Direct Loss 0.971162447986993 0 NA NA prediction 0.942324895973986 Functional Loss - PDCD5 ENSG00000105185 CDS Human protein_coding chr19:33072194 chr19:33072194 synonymous SNV . 0 21 hm7G_associated_SNPs_1539 0 0 1 0 1 PDCD5 chr19:33072233 5'GT 33072233 Upstream 40bp 1502 chr8 144642854 144642854 1 + G A rs11551202 144642854 + 144642834 144642874 41 TACGTGGTGACTGAGGTGCTGCAGACACAGAAGGAGGTGGA TACGTGGTGACTGAGGTGCTACAGACACAGAAGGAGGTGGA Direct Loss 0.971145512321724 0 NA NA prediction 0.942291024643448 Functional Loss - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144642854 chr8:144642854 synonymous SNV . 0 21 hm7G_associated_SNPs_1540 0 0 1 0 2 GSDMD chr8:144642773 3'AG 144642773 Downstream 82bp 1503 chr8 144642854 144642854 1 + G A rs11551202 144642854 + 144642834 144642874 41 TACGTGGTGACTGAGGTGCTGCAGACACAGAAGGAGGTGGA TACGTGGTGACTGAGGTGCTACAGACACAGAAGGAGGTGGA Direct Loss 0.971145512321724 0 NA NA prediction 0.942291024643448 Functional Loss - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144642854 chr8:144642854 synonymous SNV . 0 21 hm7G_associated_SNPs_1540 0 0 1 0 2 GSDMD chr8:144642941 5'GT 144642941 Upstream 88bp 1504 chr1 46725664 46725664 1 + G C BLCA 46725664 + 46725644 46725684 41 GGCTCTCGAGCATTGGGCCTGAAAAGGGCTGGGGTCCGCCG GGCTCTCGAGCATTGGGCCTCAAAAGGGCTGGGGTCCGCCG Direct Loss 0.9711330499472 0 NA NA prediction 0.942266099894399 Functional Loss - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46725664 chr1:46725664 synonymous SNV . 0 21 hm7G_associated_SNPs_1541 0 0 1 0 1 RAD54L chr1:46725636 3'AG 46725636 Downstream 29bp 1505 chrX 100666979 100666979 1 + G T UCEC 100666979 + 100666959 100666999 41 AAGAGCCCAACAATCACCATGATGCTGAGCACGGAAGGCAG AAGAGCCCAACAATCACCATTATGCTGAGCACGGAAGGCAG Direct Loss 0.971118710541555 0 NA NA prediction 0.942237421083111 Functional Loss - HNRNPH2;RPL36A-HNRNPH2 ENSG00000126945;ENSG00000257529 CDS Human protein_coding chrX:100666979 chrX:100666979 stoploss 0.996 2 21 hm7G_associated_SNPs_1543 0 0 1 0 1 RPL36A-HNRNPH2 chrX:100666924 3'AG 100666924 Downstream 56bp 1506 chr12 120502608 120502608 1 + G T SARC 120502608 + 120502588 120502628 41 ACTTTAGAGGAAAATGACCTGCTCCAAGGGACCGTGGAGGA ACTTTAGAGGAAAATGACCTTCTCCAAGGGACCGTGGAGGA Direct Loss 0.971043634046471 0 NA NA prediction 0.942087268092942 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120502608 chr12:120502608 synonymous SNV . 0 21 hm7G_associated_SNPs_1545 0 0 0 0 2 BICDL1 chr12:120502537 3'AG 120502537 Downstream 72bp 1507 chr12 120502608 120502608 1 + G T SARC 120502608 + 120502588 120502628 41 ACTTTAGAGGAAAATGACCTGCTCCAAGGGACCGTGGAGGA ACTTTAGAGGAAAATGACCTTCTCCAAGGGACCGTGGAGGA Direct Loss 0.971043634046471 0 NA NA prediction 0.942087268092942 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120502608 chr12:120502608 synonymous SNV . 0 21 hm7G_associated_SNPs_1545 0 0 0 0 2 BICDL1 chr12:120502683 5'GT 120502683 Upstream 76bp 1508 chr22 41615452 41615452 1 + G T UCEC 41615452 + 41615432 41615472 41 TATGACCAGTGGGAGGATGTGATGAAAGGGATGAAGGTGGA TATGACCAGTGGGAGGATGTTATGAAAGGGATGAAGGTGGA Direct Loss 0.970988807396249 0 NA NA prediction 0.941977614792498 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41615452 chr22:41615452 synonymous SNV . 0 21 hm7G_associated_SNPs_1546 0 0 1 3 2 L3MBTL2 chr22:41615423 3'AG 41615423 Downstream 30bp 1509 chr22 41615452 41615452 1 + G T UCEC 41615452 + 41615432 41615472 41 TATGACCAGTGGGAGGATGTGATGAAAGGGATGAAGGTGGA TATGACCAGTGGGAGGATGTTATGAAAGGGATGAAGGTGGA Direct Loss 0.970988807396249 0 NA NA prediction 0.941977614792498 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41615452 chr22:41615452 synonymous SNV . 0 21 hm7G_associated_SNPs_1546 0 0 1 3 2 L3MBTL2 chr22:41615540 5'GT 41615540 Upstream 89bp 1510 chr17 42426574 42426574 1 + G A rs111435385 42426574 + 42426554 42426594 41 GTGGCCTTAACAGCAGGGCTGGTGGCTGGAACGCGGTGCCC GTGGCCTTAACAGCAGGGCTAGTGGCTGGAACGCGGTGCCC Direct Loss 0.970983513881271 0 NA NA prediction 0.941967027762542 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42426574 chr17:42426574 synonymous SNV . 0 21 hm7G_associated_SNPs_1547 0 0 1 0 1 GRN chr17:42426670 5'GT 42426670 Upstream 97bp 1511 chr19 42384803 42384803 1 + G T DLBC 42384803 + 42384783 42384823 41 ATGAAGATGAAAACCTTTATGAAGTGAGTGAAGGGTGGGGA ATGAAGATGAAAACCTTTATTAAGTGAGTGAAGGGTGGGGA Direct Loss 0.970917901595653 0 NA NA prediction 0.941835803191306 Functional Loss - CD79A ENSG00000105369 CDS Human protein_coding chr19:42384803 chr19:42384803 stopgain 0.261 0 21 hm7G_associated_SNPs_1548 0 0 0 0 2 CD79A chr19:42384737 3'AG 42384737 Downstream 67bp 1512 chr19 42384803 42384803 1 + G T DLBC 42384803 + 42384783 42384823 41 ATGAAGATGAAAACCTTTATGAAGTGAGTGAAGGGTGGGGA ATGAAGATGAAAACCTTTATTAAGTGAGTGAAGGGTGGGGA Direct Loss 0.970917901595653 0 NA NA prediction 0.941835803191306 Functional Loss - CD79A ENSG00000105369 CDS Human protein_coding chr19:42384803 chr19:42384803 stopgain 0.261 0 21 hm7G_associated_SNPs_1548 0 0 0 0 2 CD79A chr19:42384805 5'GT 42384805 Upstream 3bp 1513 chr19 8548056 8548056 1 + G A UCEC 8548056 + 8548036 8548076 41 CCTTAGAAATCCTAAGTAATGCACTGAAGAGAGGAGAGATC CCTTAGAAATCCTAAGTAATACACTGAAGAGAGGAGAGATC Direct Loss 0.97091066931278 0 NA NA prediction 0.941821338625561 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8548056 chr19:8548056 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1549 0 0 1 0 2 HNRNPM chr19:8548042 3'AG 8548042 Downstream 15bp 1514 chr19 8548056 8548056 1 + G A UCEC 8548056 + 8548036 8548076 41 CCTTAGAAATCCTAAGTAATGCACTGAAGAGAGGAGAGATC CCTTAGAAATCCTAAGTAATACACTGAAGAGAGGAGAGATC Direct Loss 0.97091066931278 0 NA NA prediction 0.941821338625561 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8548056 chr19:8548056 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1549 0 0 1 0 2 HNRNPM chr19:8548095 5'GT 8548095 Upstream 40bp 1515 chr12 108959109 108959109 1 + G A LUAD 108959109 + 108959089 108959129 41 TTTTCTAGATTCAAGTGGATGAAAAGGGGAAGATTGTGGAT TTTTCTAGATTCAAGTGGATAAAAAGGGGAAGATTGTGGAT Direct Loss 0.970826482851718 0 NA NA prediction 0.941652965703437 Functional Loss - ISCU ENSG00000136003 CDS Human protein_coding chr12:108959109 chr12:108959109 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_1552 0 0 1 0 2 ISCU chr12:108959097 3'AG 108959097 Downstream 13bp 1516 chr12 108959109 108959109 1 + G A LUAD 108959109 + 108959089 108959129 41 TTTTCTAGATTCAAGTGGATGAAAAGGGGAAGATTGTGGAT TTTTCTAGATTCAAGTGGATAAAAAGGGGAAGATTGTGGAT Direct Loss 0.970826482851718 0 NA NA prediction 0.941652965703437 Functional Loss - ISCU ENSG00000136003 CDS Human protein_coding chr12:108959109 chr12:108959109 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_1552 0 0 1 0 2 ISCU chr12:108959207 5'GT 108959207 Upstream 99bp 1517 chr1 54683907 54683907 1 + G T UCEC 54683907 + 54683887 54683927 41 AAGTTTTTAGCTCTATATTTGCATGGTGCTGCGTGAGCGGA AAGTTTTTAGCTCTATATTTTCATGGTGCTGCGTGAGCGGA Direct Loss 0.97081784823567 0 NA NA prediction 0.941635696471341 Functional Loss - MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54683907 chr1:54683907 nonsynonymous SNV 0.922 3 21 hm7G_associated_SNPs_1553 0 0 1 3 1 MRPL37 chr1:54683845 3'AG 54683845 Downstream 63bp 1518 chr2 219266367 219266367 1 + G A BLCA 219266367 + 219266347 219266387 41 TCTGCTGTGTCTGCCGGGATGATGGGGAGGCCCTGCCTGCT TCTGCTGTGTCTGCCGGGATAATGGGGAGGCCCTGCCTGCT Direct Loss 0.970681841410267 0 NA NA prediction 0.941363682820534 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219266367 chr2:219266367 nonsynonymous SNV 0.976 1 21 hm7G_associated_SNPs_1556 0 0 1 0 2 CTDSP1 chr2:219266287 3'AG 219266287 Downstream 81bp 1519 chr2 219266367 219266367 1 + G A BLCA 219266367 + 219266347 219266387 41 TCTGCTGTGTCTGCCGGGATGATGGGGAGGCCCTGCCTGCT TCTGCTGTGTCTGCCGGGATAATGGGGAGGCCCTGCCTGCT Direct Loss 0.970681841410267 0 NA NA prediction 0.941363682820534 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219266367 chr2:219266367 nonsynonymous SNV 0.976 1 21 hm7G_associated_SNPs_1556 0 0 1 0 2 CTDSP1 chr2:219266435 5'GT 219266435 Upstream 69bp 1520 chr6 144181578 144181578 1 + G A LUAD 144181578 + 144181558 144181598 41 TCAAGTTTTATGAGCAATATGATGATGATGAAATTGGAGCT TCAAGTTTTATGAGCAATATAATGATGATGAAATTGGAGCT Direct Loss 0.970621993978391 0 NA NA prediction 0.941243987956783 Functional Loss - LTV1 ENSG00000135521 CDS Human protein_coding chr6:144181578 chr6:144181578 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1558 0 0 1 0 1 LTV1 chr6:144181563 3'AG 144181563 Downstream 16bp 1521 chr5 78416233 78416233 1 + G A COAD 78416233 + 78416213 78416253 41 AAGTGGCTGATGAAGGAGATGCTTTGGTAGCAGGAGGAGTG AAGTGGCTGATGAAGGAGATACTTTGGTAGCAGGAGGAGTG Direct Loss 0.970598650278326 0 NA NA prediction 0.941197300556652 Functional Loss - BHMT ENSG00000145692 CDS Human protein_coding chr5:78416233 chr5:78416233 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_1559 0 0 0 0 1 BHMT chr5:78416173 3'AG 78416173 Downstream 61bp 1522 chr14 23945265 23945265 1 + G A HNSC 23945265 + 23945245 23945285 41 CTGAGGATGAGGAGGAAGATGAAGCAGAAGATGACCAGTCT CTGAGGATGAGGAGGAAGATAAAGCAGAAGATGACCAGTCT Direct Loss 0.970590951167077 0 NA NA prediction 0.941181902334153 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23945265 chr14:23945265 nonsynonymous SNV 0.360 1 21 hm7G_associated_SNPs_1560 0 0 1 0 2 NGDN chr14:23945238 3'AG 23945238 Downstream 28bp 1523 chr14 23945265 23945265 1 + G A HNSC 23945265 + 23945245 23945285 41 CTGAGGATGAGGAGGAAGATGAAGCAGAAGATGACCAGTCT CTGAGGATGAGGAGGAAGATAAAGCAGAAGATGACCAGTCT Direct Loss 0.970590951167077 0 NA NA prediction 0.941181902334153 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23945265 chr14:23945265 nonsynonymous SNV 0.360 1 21 hm7G_associated_SNPs_1560 0 0 1 0 2 NGDN chr14:23945361 5'GT 23945361 Upstream 97bp 1524 chr17 73261875 73261875 1 + G A BLCA 73261875 + 73261855 73261895 41 AAAAAGCACCAGCGGACACTGATGCCGGAGAAGCTGTCACA AAAAAGCACCAGCGGACACTAATGCCGGAGAAGCTGTCACA Direct Loss 0.970579915578979 0 NA NA prediction 0.941159831157959 Functional Loss - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73261875 chr17:73261875 synonymous SNV . 0 21 hm7G_associated_SNPs_1562 0 0 1 0 1 MRPS7 chr17:73261783 3'AG 73261783 Downstream 93bp 1525 chr7 142962178 142962178 1 + G A BLCA 142962178 + 142962158 142962198 41 GGAGCTGTGGATGCGCGTCTGGTCAAGGGTGAGTGTGGGGC GGAGCTGTGGATGCGCGTCTAGTCAAGGGTGAGTGTGGGGC Direct Loss 0.970561346236622 0 NA NA prediction 0.941122692473244 Functional Loss - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962178 chr7:142962178 stopgain 0.458 1 21 hm7G_associated_SNPs_1564 0 0 1 0 1 GSTK1 chr7:142962085 3'AG 142962085 Downstream 94bp 1526 chr15 75122507 75122507 1 + G A LUSC 75122507 + 75122487 75122527 41 GCCAGATCCAGATGGCAGGTGGAGACGTGGAGCTGCCCCGG GCCAGATCCAGATGGCAGGTAGAGACGTGGAGCTGCCCCGG Direct Loss 0.970556504271495 0 NA NA prediction 0.94111300854299 Functional Loss - CPLX3 ENSG00000213578 CDS Human protein_coding chr15:75122507 chr15:75122507 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_1565 0 0 0 0 1 CPLX3 chr15:75122471 3'AG 75122471 Downstream 37bp 1527 chr22 27026312 27026312 1 + G A UCEC 27026312 + 27026292 27026332 41 TCTCTTTTCCAGCTGGGTTTGCTCCCAGTTTCCGGGCTACC TCTCTTTTCCAGCTGGGTTTACTCCCAGTTTCCGGGCTACC Direct Loss 0.970494801109663 0 NA NA prediction 0.940989602219326 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27026312 chr22:27026312 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_1566 0 0 0 0 1 CRYBA4 chr22:27026304 3'AG 27026304 Downstream 9bp 1528 chr6 112421958 112421958 1 + G A LAML 112421958 + 112421938 112421978 41 CAACAACGAGAAAGCCACCTGCACAAAGCAGCAAGGAAATG CAACAACGAGAAAGCCACCTACACAAAGCAGCAAGGAAATG Direct Loss 0.970431988906975 0 NA NA prediction 0.94086397781395 Functional Loss - FAM229B ENSG00000203778 CDS Human protein_coding chr6:112421958 chr6:112421958 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1567 0 0 0 0 1 FAM229B chr6:112421873 3'AG 112421873 Downstream 86bp 1529 chrX 151817776 151817776 1 + G A SARC 151817776 + 151817756 151817796 41 CCCTATGGACAAGCAGGCCTGCAACCTGGTGGTAGAGAGCT CCCTATGGACAAGCAGGCCTACAACCTGGTGGTAGAGAGCT Direct Loss 0.970429496929141 0 NA NA prediction 0.940858993858281 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151817776 chrX:151817776 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_1568 0 0 0 0 2 GABRQ chrX:151817714 3'AG 151817714 Downstream 63bp 1530 chrX 151817776 151817776 1 + G A SARC 151817776 + 151817756 151817796 41 CCCTATGGACAAGCAGGCCTGCAACCTGGTGGTAGAGAGCT CCCTATGGACAAGCAGGCCTACAACCTGGTGGTAGAGAGCT Direct Loss 0.970429496929141 0 NA NA prediction 0.940858993858281 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151817776 chrX:151817776 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_1568 0 0 0 0 2 GABRQ chrX:151817796 5'GT 151817796 Upstream 21bp 1531 chr2 187370515 187370515 1 + G A BRCA 187370515 + 187370495 187370535 41 GTCCTGAACTGGTCAATGATGATGATGAGGAAGCAGATGAT GTCCTGAACTGGTCAATGATAATGATGAGGAAGCAGATGAT Direct Loss 0.97039059937945 0 NA NA prediction 0.940781198758901 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370515 chr2:187370515 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1569 0 0 1 0 2 ZC3H15 chr2:187370467 3'AG 187370467 Downstream 49bp 1532 chr2 187370515 187370515 1 + G A BRCA 187370515 + 187370495 187370535 41 GTCCTGAACTGGTCAATGATGATGATGAGGAAGCAGATGAT GTCCTGAACTGGTCAATGATAATGATGAGGAAGCAGATGAT Direct Loss 0.97039059937945 0 NA NA prediction 0.940781198758901 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370515 chr2:187370515 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1569 0 0 1 0 2 ZC3H15 chr2:187370568 5'GT 187370568 Upstream 54bp 1533 chr17 28507994 28507994 1 + G T SARC 28507994 + 28507974 28508014 41 ACCTATTAAATCAAGCAGTTGGTGAAGAGGAAGTACCTAAA ACCTATTAAATCAAGCAGTTTGTGAAGAGGAAGTACCTAAA Direct Loss 0.970363243493968 0 NA NA prediction 0.940726486987936 Functional Loss - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28507994 chr17:28507994 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1570 0 0 1 0 2 NSRP1 chr17:28507926 3'AG 28507926 Downstream 69bp 1534 chr17 28507994 28507994 1 + G T SARC 28507994 + 28507974 28508014 41 ACCTATTAAATCAAGCAGTTGGTGAAGAGGAAGTACCTAAA ACCTATTAAATCAAGCAGTTTGTGAAGAGGAAGTACCTAAA Direct Loss 0.970363243493968 0 NA NA prediction 0.940726486987936 Functional Loss - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28507994 chr17:28507994 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1570 0 0 1 0 2 NSRP1 chr17:28508034 5'GT 28508034 Upstream 41bp 1535 chr20 42233658 42233658 1 + G T rs200560199 42233658 + 42233638 42233678 41 CAAGGGAAATTAGCCGAGCTGCAGGAAAGGCTGTGCCTGGG CAAGGGAAATTAGCCGAGCTTCAGGAAAGGCTGTGCCTGGG Direct Loss 0.970344736045064 0 NA NA prediction 0.940689472090127 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42233658 chr20:42233658 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1572 0 0 1 0 2 IFT52 chr20:42233642 3'AG 42233642 Downstream 17bp 1536 chr20 42233658 42233658 1 + G T rs200560199 42233658 + 42233638 42233678 41 CAAGGGAAATTAGCCGAGCTGCAGGAAAGGCTGTGCCTGGG CAAGGGAAATTAGCCGAGCTTCAGGAAAGGCTGTGCCTGGG Direct Loss 0.970344736045064 0 NA NA prediction 0.940689472090127 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42233658 chr20:42233658 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1572 0 0 1 0 2 IFT52 chr20:42233713 5'GT 42233713 Upstream 56bp 1537 chr8 33354239 33354239 1 + G A BLCA 33354239 + 33354219 33354259 41 CAGATACTGAGGAAAAAGATGATGATGATGATGATGAGGAA CAGATACTGAGGAAAAAGATAATGATGATGATGATGAGGAA Direct Loss 0.970241716344169 0 NA NA prediction 0.940483432688339 Functional Loss - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33354239 chr8:33354239 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_1573 0 0 1 0 2 MAK16 chr8:33354143 3'AG 33354143 Downstream 97bp 1538 chr8 33354239 33354239 1 + G A BLCA 33354239 + 33354219 33354259 41 CAGATACTGAGGAAAAAGATGATGATGATGATGATGAGGAA CAGATACTGAGGAAAAAGATAATGATGATGATGATGAGGAA Direct Loss 0.970241716344169 0 NA NA prediction 0.940483432688339 Functional Loss - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33354239 chr8:33354239 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_1573 0 0 1 0 2 MAK16 chr8:33354259 5'GT 33354259 Upstream 21bp 1539 chr4 190864386 190864386 1 + G T COAD 190864386 + 190864366 190864406 41 AAAGAGCAAAGATAAGAAAAGAAAAAGAGAAGAAGATGAAG AAAGAGCAAAGATAAGAAAATAAAAAGAGAAGAAGATGAAG Direct Loss 0.97018749557612 0 NA NA prediction 0.94037499115224 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190864386 chr4:190864386 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_1574 0 0 1 0 2 FRG1 chr4:190864357 3'AG 190864357 Downstream 30bp 1540 chr4 190864386 190864386 1 + G T COAD 190864386 + 190864366 190864406 41 AAAGAGCAAAGATAAGAAAAGAAAAAGAGAAGAAGATGAAG AAAGAGCAAAGATAAGAAAATAAAAAGAGAAGAAGATGAAG Direct Loss 0.97018749557612 0 NA NA prediction 0.94037499115224 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190864386 chr4:190864386 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_1574 0 0 1 0 2 FRG1 chr4:190864427 5'GT 190864427 Upstream 42bp 1541 chrX 77369643 77369643 1 + G A UCEC 77369643 + 77369623 77369663 41 AAGAAGGGAAGGGAAAAGATGCTTCTGGGAACAAGGTAGGA AAGAAGGGAAGGGAAAAGATACTTCTGGGAACAAGGTAGGA Direct Loss 0.970164881359118 0 NA NA prediction 0.940329762718237 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77369643 chrX:77369643 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1575 0 0 1 0 1 PGK1 chrX:77369657 5'GT 77369657 Upstream 15bp 1542 chr1 54683911 54683911 1 + G T LUAD 54683911 + 54683891 54683931 41 TTTTAGCTCTATATTTGCATGGTGCTGCGTGAGCGGAGGAC TTTTAGCTCTATATTTGCATTGTGCTGCGTGAGCGGAGGAC Direct Loss 0.970154308309871 0 NA NA prediction 0.940308616619742 Functional Loss - MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54683911 chr1:54683911 nonsynonymous SNV 0.820 4 21 hm7G_associated_SNPs_1576 0 0 1 3 1 MRPL37 chr1:54683845 3'AG 54683845 Downstream 67bp 1543 chr15 38776549 38776549 1 + G A UCEC 38776549 + 38776529 38776569 41 CTTGGCAAAAGAGACAAGAAGGCGGCGGTGGAAGGGGTGGT CTTGGCAAAAGAGACAAGAAAGCGGCGGTGGAAGGGGTGGT Direct Loss 0.97012114416356 0 NA NA prediction 0.94024228832712 Functional Loss - FAM98B ENSG00000171262 CDS Human protein_coding chr15:38776549 chr15:38776549 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_1577 0 0 0 0 1 FAM98B chr15:38776456 3'AG 38776456 Downstream 94bp 1544 chr20 16712882 16712882 1 + G A LUSC 16712882 + 16712862 16712902 41 ATTGTGGCTTTAAAGACCATGAAGATGAGGGGGCAGGCCTT ATTGTGGCTTTAAAGACCATAAAGATGAGGGGGCAGGCCTT Direct Loss 0.970099786774219 0 NA NA prediction 0.940199573548437 Functional Loss - SNRPB2 ENSG00000125870 CDS Human protein_coding chr20:16712882 chr20:16712882 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1578 0 0 1 0 2 SNRPB2 chr20:16712809 3'AG 16712809 Downstream 74bp 1545 chr20 16712882 16712882 1 + G A LUSC 16712882 + 16712862 16712902 41 ATTGTGGCTTTAAAGACCATGAAGATGAGGGGGCAGGCCTT ATTGTGGCTTTAAAGACCATAAAGATGAGGGGGCAGGCCTT Direct Loss 0.970099786774219 0 NA NA prediction 0.940199573548437 Functional Loss - SNRPB2 ENSG00000125870 CDS Human protein_coding chr20:16712882 chr20:16712882 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1578 0 0 1 0 2 SNRPB2 chr20:16712981 5'GT 16712981 Upstream 100bp 1546 chr5 176733460 176733460 1 + G A ESCA 176733460 + 176733440 176733480 41 ACACTTGTTGAGACAGCCAAGGAAGCCAAGGAGAAGGCAAA ACACTTGTTGAGACAGCCAAAGAAGCCAAGGAGAAGGCAAA Direct Loss 0.970086651808106 0 NA NA prediction 0.940173303616211 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733460 chr5:176733460 synonymous SNV . 0 21 hm7G_associated_SNPs_1581 0 0 4 0 2 PRELID1 chr5:176733423 3'AG 176733423 Downstream 38bp 1547 chr5 176733460 176733460 1 + G A ESCA 176733460 + 176733440 176733480 41 ACACTTGTTGAGACAGCCAAGGAAGCCAAGGAGAAGGCAAA ACACTTGTTGAGACAGCCAAAGAAGCCAAGGAGAAGGCAAA Direct Loss 0.970086651808106 0 NA NA prediction 0.940173303616211 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733460 chr5:176733460 synonymous SNV . 0 21 hm7G_associated_SNPs_1581 0 0 4 0 2 PRELID1 chr5:176733456 3'AG 176733456 Downstream 5bp 1548 chr5 1802444 1802444 1 + G T COAD 1802444 + 1802424 1802464 41 TTTTTTTCCAGGTTTATGATGATAAAGACTACAGGAGAATT TTTTTTTCCAGGTTTATGATTATAAAGACTACAGGAGAATT Direct Loss 0.970071403322487 0 NA NA prediction 0.940142806644973 Functional Loss - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1802444 chr5:1802444 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_1582 0 0 1 0 2 NDUFS6 chr5:1802435 3'AG 1802435 Downstream 10bp 1549 chr5 1802444 1802444 1 + G T COAD 1802444 + 1802424 1802464 41 TTTTTTTCCAGGTTTATGATGATAAAGACTACAGGAGAATT TTTTTTTCCAGGTTTATGATTATAAAGACTACAGGAGAATT Direct Loss 0.970071403322487 0 NA NA prediction 0.940142806644973 Functional Loss - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1802444 chr5:1802444 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_1582 0 0 1 0 2 NDUFS6 chr5:1802488 5'GT 1802488 Upstream 45bp 1550 chr14 89041109 89041109 1 + G T HNSC 89041109 + 89041089 89041129 41 TAAAAAAATTCAATCATGATGGAGAAGAGGAGGAAGAAGAT TAAAAAAATTCAATCATGATTGAGAAGAGGAGGAAGAAGAT Direct Loss 0.970069648468348 0 NA NA prediction 0.940139296936695 Functional Loss - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89041109 chr14:89041109 stopgain 1.000 1 21 hm7G_associated_SNPs_1583 0 0 1 0 2 ZC3H14 chr14:89041037 3'AG 89041037 Downstream 73bp 1551 chr14 89041109 89041109 1 + G T HNSC 89041109 + 89041089 89041129 41 TAAAAAAATTCAATCATGATGGAGAAGAGGAGGAAGAAGAT TAAAAAAATTCAATCATGATTGAGAAGAGGAGGAAGAAGAT Direct Loss 0.970069648468348 0 NA NA prediction 0.940139296936695 Functional Loss - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89041109 chr14:89041109 stopgain 1.000 1 21 hm7G_associated_SNPs_1583 0 0 1 0 2 ZC3H14 chr14:89041197 5'GT 89041197 Upstream 89bp 1552 chr1 47610078 47610078 1 + G A SKCM 47610078 + 47610058 47610098 41 CTACAGAAGGAGGGGGAGCTGGAGAAGATCAAGAGGAAGAG CTACAGAAGGAGGGGGAGCTAGAGAAGATCAAGAGGAAGAG Direct Loss 0.970047482576644 0 NA NA prediction 0.940094965153287 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610078 chr1:47610078 nonsynonymous SNV 0.185 0 21 hm7G_associated_SNPs_1584 0 0 0 0 2 CYP4A22 chr1:47610029 3'AG 47610029 Downstream 50bp 1553 chr1 47610078 47610078 1 + G A SKCM 47610078 + 47610058 47610098 41 CTACAGAAGGAGGGGGAGCTGGAGAAGATCAAGAGGAAGAG CTACAGAAGGAGGGGGAGCTAGAGAAGATCAAGAGGAAGAG Direct Loss 0.970047482576644 0 NA NA prediction 0.940094965153287 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610078 chr1:47610078 nonsynonymous SNV 0.185 0 21 hm7G_associated_SNPs_1584 0 0 0 0 2 CYP4A22 chr1:47610135 5'GT 47610135 Upstream 58bp 1554 chr11 125780309 125780309 1 + G T LUSC 125780309 + 125780289 125780329 41 GCTCTGCAAACTGGCCGTGTGGTTGAGCAGATGGGAAAATT GCTCTGCAAACTGGCCGTGTTGTTGAGCAGATGGGAAAATT Direct Loss 0.970015452645445 0 NA NA prediction 0.94003090529089 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125780309 chr11:125780309 synonymous SNV . 0 21 hm7G_associated_SNPs_1586 0 0 1 0 2 DDX25 chr11:125780259 3'AG 125780259 Downstream 51bp 1555 chr11 125780309 125780309 1 + G T LUSC 125780309 + 125780289 125780329 41 GCTCTGCAAACTGGCCGTGTGGTTGAGCAGATGGGAAAATT GCTCTGCAAACTGGCCGTGTTGTTGAGCAGATGGGAAAATT Direct Loss 0.970015452645445 0 NA NA prediction 0.94003090529089 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125780309 chr11:125780309 synonymous SNV . 0 21 hm7G_associated_SNPs_1586 0 0 1 0 2 DDX25 chr11:125780373 5'GT 125780373 Upstream 65bp 1556 chr7 134215482 134215482 1 + G T LUAD 134215482 + 134215462 134215502 41 GTGCCTATGTCTATCAGAATGAACATGAAGTGGGGGAAGCC GTGCCTATGTCTATCAGAATTAACATGAAGTGGGGGAAGCC Direct Loss 0.97000197796766 0 NA NA prediction 0.94000395593532 Functional Loss - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215482 chr7:134215482 stopgain 0.471 1 21 hm7G_associated_SNPs_1587 0 0 1 0 2 AKR1B10 chr7:134215395 3'AG 134215395 Downstream 88bp 1557 chr7 134215482 134215482 1 + G T LUAD 134215482 + 134215462 134215502 41 GTGCCTATGTCTATCAGAATGAACATGAAGTGGGGGAAGCC GTGCCTATGTCTATCAGAATTAACATGAAGTGGGGGAAGCC Direct Loss 0.97000197796766 0 NA NA prediction 0.94000395593532 Functional Loss - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134215482 chr7:134215482 stopgain 0.471 1 21 hm7G_associated_SNPs_1587 0 0 1 0 2 AKR1B10 chr7:134215562 5'GT 134215562 Upstream 81bp 1558 chr19 6743530 6743530 1 + G A STAD 6743530 + 6743510 6743550 41 GCGTAAATTTGAGCGGGACTGCCGGGAGGCAGAGAAGGCAG GCGTAAATTTGAGCGGGACTACCGGGAGGCAGAGAAGGCAG Direct Loss 0.96992082203728 0 NA NA prediction 0.93984164407456 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6743530 chr19:6743530 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_1588 0 0 1 0 1 TRIP10 chr19:6743609 5'GT 6743609 Upstream 80bp 1559 chr12 4873146 4873146 1 + G C LUAD 4873146 + 4873126 4873166 41 CCTATTGGATGAAAATGTCTGCTTGGATCAGGGACCCGTTC CCTATTGGATGAAAATGTCTCCTTGGATCAGGGACCCGTTC Direct Loss 0.969914597125011 0 NA NA prediction 0.939829194250022 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4873146 chr12:4873146 nonsynonymous SNV 0.371 4 21 hm7G_associated_SNPs_1589 0 0 0 0 2 GALNT8 chr12:4873118 3'AG 4873118 Downstream 29bp 1560 chr12 4873146 4873146 1 + G C LUAD 4873146 + 4873126 4873166 41 CCTATTGGATGAAAATGTCTGCTTGGATCAGGGACCCGTTC CCTATTGGATGAAAATGTCTCCTTGGATCAGGGACCCGTTC Direct Loss 0.969914597125011 0 NA NA prediction 0.939829194250022 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4873146 chr12:4873146 nonsynonymous SNV 0.371 4 21 hm7G_associated_SNPs_1589 0 0 0 0 2 GALNT8 chr12:4873213 5'GT 4873213 Upstream 68bp 1561 chr4 49046859 49046859 1 + G A SKCM 49046859 + 49046839 49046879 41 TACATTATGTATCGAGGGCTGATCAGGTGAGCACAGGGGTT TACATTATGTATCGAGGGCTAATCAGGTGAGCACAGGGGTT Direct Loss 0.969880680606752 0 NA NA prediction 0.939761361213504 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49046859 chr4:49046859 synonymous SNV . 0 21 hm7G_associated_SNPs_1590 0 0 0 0 2 CWH43 chr4:49046803 3'AG 49046803 Downstream 57bp 1562 chr4 49046859 49046859 1 + G A SKCM 49046859 + 49046839 49046879 41 TACATTATGTATCGAGGGCTGATCAGGTGAGCACAGGGGTT TACATTATGTATCGAGGGCTAATCAGGTGAGCACAGGGGTT Direct Loss 0.969880680606752 0 NA NA prediction 0.939761361213504 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49046859 chr4:49046859 synonymous SNV . 0 21 hm7G_associated_SNPs_1590 0 0 0 0 2 CWH43 chr4:49046864 5'GT 49046864 Upstream 6bp 1563 chr7 56126160 56126160 1 + G T SARC 56126160 + 56126140 56126180 41 GTTAAAAAAATAATAGAACTGAAAAGGAAAGTCTGTGGCGA GTTAAAAAAATAATAGAACTTAAAAGGAAAGTCTGTGGCGA Direct Loss 0.969861762433 0 NA NA prediction 0.939723524866001 Functional Loss - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56126160 chr7:56126160 synonymous SNV . 0 21 hm7G_associated_SNPs_1591 0 0 1 0 1 CCT6A chr7:56126214 5'GT 56126214 Upstream 55bp 1564 chr9 136516836 136516836 1 + G A SKCM 136516836 + 136516816 136516856 41 AGAAAGGTGGTCACAGTGCTGGTCCGGGACGGCCGGGAGTG AGAAAGGTGGTCACAGTGCTAGTCCGGGACGGCCGGGAGTG Direct Loss 0.969791002590892 0 NA NA prediction 0.939582005181784 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516836 chr9:136516836 synonymous SNV . 0 21 hm7G_associated_SNPs_1593 0 0 0 0 2 DBH chr9:136516756 3'AG 136516756 Downstream 81bp 1565 chr9 136516836 136516836 1 + G A SKCM 136516836 + 136516816 136516856 41 AGAAAGGTGGTCACAGTGCTGGTCCGGGACGGCCGGGAGTG AGAAAGGTGGTCACAGTGCTAGTCCGGGACGGCCGGGAGTG Direct Loss 0.969791002590892 0 NA NA prediction 0.939582005181784 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136516836 chr9:136516836 synonymous SNV . 0 21 hm7G_associated_SNPs_1593 0 0 0 0 2 DBH chr9:136516899 5'GT 136516899 Upstream 64bp 1566 chr20 30231313 30231313 1 + G A LAML 30231313 + 30231293 30231333 41 TTCATTGGATTCGCAGCTCTGGTGATTTGGTGGCAGCGGGT TTCATTGGATTCGCAGCTCTAGTGATTTGGTGGCAGCGGGT Direct Loss 0.969788708198221 0 NA NA prediction 0.939577416396443 Functional Loss - COX4I2 ENSG00000131055 CDS Human protein_coding chr20:30231313 chr20:30231313 synonymous SNV . 0 21 hm7G_associated_SNPs_1594 0 0 0 0 1 COX4I2 chr20:30231338 5'GT 30231338 Upstream 26bp 1567 chr10 76990703 76990703 1 + G T LUAD 76990703 + 76990683 76990723 41 TAGATGGGAAGAGCATTAATGCTGGAGGCCACAAGGTTGGG TAGATGGGAAGAGCATTAATTCTGGAGGCCACAAGGTTGGG Direct Loss 0.969785628299731 0 NA NA prediction 0.939571256599462 Functional Loss - VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76990703 chr10:76990703 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1595 0 0 1 0 1 VDAC2 chr10:76990656 3'AG 76990656 Downstream 48bp 1568 chr19 16198869 16198869 1 + G T SARC 16198869 + 16198849 16198889 41 CTGGTCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGAGCG CTGGTCATCCTGGAGGGTGATCTGGAGAGGGCAGAGGAGCG Direct Loss 0.969744180780797 0 NA NA prediction 0.939488361561595 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16198869 chr19:16198869 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_1596 0 0 1 0 2 TPM4 chr19:16198837 3'AG 16198837 Downstream 33bp 1569 chr19 16198869 16198869 1 + G T SARC 16198869 + 16198849 16198889 41 CTGGTCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGAGCG CTGGTCATCCTGGAGGGTGATCTGGAGAGGGCAGAGGAGCG Direct Loss 0.969744180780797 0 NA NA prediction 0.939488361561595 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16198869 chr19:16198869 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_1596 0 0 1 0 2 TPM4 chr19:16198907 5'GT 16198907 Upstream 39bp 1570 chr6 43488442 43488442 1 + G A STAD 43488442 + 43488422 43488462 41 ATCACCCTGCTTGAGCCCGTGGAAGGGGAGGCAGCTGAGGA ATCACCCTGCTTGAGCCCGTAGAAGGGGAGGCAGCTGAGGA Direct Loss 0.969731978601664 0 NA NA prediction 0.939463957203327 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488442 chr6:43488442 synonymous SNV . 0 21 hm7G_associated_SNPs_1597 0 0 1 0 2 POLR1C chr6:43488363 3'AG 43488363 Downstream 80bp 1571 chr6 43488442 43488442 1 + G A STAD 43488442 + 43488422 43488462 41 ATCACCCTGCTTGAGCCCGTGGAAGGGGAGGCAGCTGAGGA ATCACCCTGCTTGAGCCCGTAGAAGGGGAGGCAGCTGAGGA Direct Loss 0.969731978601664 0 NA NA prediction 0.939463957203327 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488442 chr6:43488442 synonymous SNV . 0 21 hm7G_associated_SNPs_1597 0 0 1 0 2 POLR1C chr6:43488512 5'GT 43488512 Upstream 71bp 1572 chr3 195955025 195955025 1 + G A SKCM 195955025 + 195955005 195955045 41 TACCTGCTGATGCTGGTCATGGTGGAAGGCTTTGGGGGGAA TACCTGCTGATGCTGGTCATAGTGGAAGGCTTTGGGGGGAA Direct Loss 0.969700856316676 0 NA NA prediction 0.939401712633353 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955025 chr3:195955025 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1598 0 0 0 0 1 SLC51A chr3:195954986 3'AG 195954986 Downstream 40bp 1573 chr4 70160343 70160343 1 + G A rs72552705 70160343 + 70160323 70160363 41 CTGGATTGAATTTGTGATGTGCCACAAAGGAGCCAAACACC CTGGATTGAATTTGTGATGTACCACAAAGGAGCCAAACACC Direct Loss 0.969698416730105 0 NA NA prediction 0.939396833460211 Functional Loss - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70160343 chr4:70160343 nonsynonymous SNV 0.257 1 21 hm7G_associated_SNPs_1599 0 0 0 0 1 UGT2B28 chr4:70160248 3'AG 70160248 Downstream 96bp 1574 chr11 118828856 118828856 1 + G A SKCM 118828856 + 118828836 118828876 41 ATGGCCCGCACAGGGGGCATGGTGGTCATCACGGTGCTGCT ATGGCCCGCACAGGGGGCATAGTGGTCATCACGGTGCTGCT Direct Loss 0.969672535689334 0 NA NA prediction 0.939345071378669 Functional Loss - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118828856 chr11:118828856 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1600 0 0 0 0 1 UPK2 chr11:118828807 3'AG 118828807 Downstream 50bp 1575 chr17 74261643 74261643 1 + G A LUSC 74261643 + 74261623 74261663 41 ATGATCAACCAGTTCGTGCTGGCCGCGGGCTGCGCGGCCGA ATGATCAACCAGTTCGTGCTAGCCGCGGGCTGCGCGGCCGA Direct Loss 0.969633982530984 0 NA NA prediction 0.939267965061968 Functional Loss - UBALD2 ENSG00000185262 CDS Human protein_coding chr17:74261643 chr17:74261643 synonymous SNV . 0 21 hm7G_associated_SNPs_1601 0 0 1 0 1 UBALD2 chr17:74261706 5'GT 74261706 Upstream 64bp 1576 chr17 73269676 73269676 1 - C T rs4789164 73269676 - 73269656 73269696 41 GACTGTGCCAAGCAGGTGCTGCAAAAGGAAGGCGCCCTGGG GACTGTGCCAAGCAGGTGCTACAAAAGGAAGGCGCCCTGGG Direct Loss 0.969548625381964 0 NA NA prediction 0.939097250763927 Functional Loss - SLC25A19 ENSG00000125454 CDS Human protein_coding chr17:73269676 chr17:73269676 synonymous SNV . 0 21 hm7G_associated_SNPs_1604 2 0 1 0 1 SLC25A19 chr17:73269720 3'AG 73269720 Downstream 45bp 1577 chr10 126517989 126517989 1 + G A rs2303611 126517989 + 126517969 126518009 41 TTTTTTGACAAGGATGGAGTGATGAAAGACATCAGGGCGAT TTTTTTGACAAGGATGGAGTAATGAAAGACATCAGGGCGAT Direct Loss 0.96954203589229 0 NA NA prediction 0.93908407178458 Functional Loss - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126517989 chr10:126517989 synonymous SNV . 0 21 hm7G_associated_SNPs_1607 0 0 0 0 2 ABRAXAS2 chr10:126517962 3'AG 126517962 Downstream 28bp 1578 chr10 126517989 126517989 1 + G A rs2303611 126517989 + 126517969 126518009 41 TTTTTTGACAAGGATGGAGTGATGAAAGACATCAGGGCGAT TTTTTTGACAAGGATGGAGTAATGAAAGACATCAGGGCGAT Direct Loss 0.96954203589229 0 NA NA prediction 0.93908407178458 Functional Loss - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126517989 chr10:126517989 synonymous SNV . 0 21 hm7G_associated_SNPs_1607 0 0 0 0 2 ABRAXAS2 chr10:126518046 5'GT 126518046 Upstream 58bp 1579 chr19 8467047 8467047 1 + G A ESCA 8467047 + 8467027 8467067 41 CTATGAGAACGTGGAGCGCTGGCTGAAGGAGCTGCGGGACC CTATGAGAACGTGGAGCGCTAGCTGAAGGAGCTGCGGGACC Direct Loss 0.969461025889865 0 NA NA prediction 0.93892205177973 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8467047 chr19:8467047 stopgain 1.000 1 21 hm7G_associated_SNPs_1608 0 0 1 0 1 RAB11B chr19:8466970 3'AG 8466970 Downstream 78bp 1580 chr9 132565661 132565661 1 + G C CESC 132565661 + 132565641 132565681 41 CTGCCGCTTCGCCGAGTGCTGCCGCGAGGAGCGGCCGCTCA CTGCCGCTTCGCCGAGTGCTCCCGCGAGGAGCGGCCGCTCA Direct Loss 0.969387387294934 0 NA NA prediction 0.938774774589868 Functional Loss - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132565661 chr9:132565661 nonsynonymous SNV 0.803 4 21 hm7G_associated_SNPs_1611 0 0 1 0 1 TOR1B chr9:132565690 5'GT 132565690 Upstream 30bp 1581 chr2 27898484 27898484 1 + G A BLCA 27898484 + 27898464 27898504 41 TTTCTTGATAGGACTGGCCTGATTGAGAAGAAGCGTCTGAA TTTCTTGATAGGACTGGCCTAATTGAGAAGAAGCGTCTGAA Direct Loss 0.969375452398611 0 NA NA prediction 0.938750904797221 Functional Loss - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27898484 chr2:27898484 synonymous SNV . 0 21 hm7G_associated_SNPs_1612 0 0 1 0 1 SLC4A1AP chr2:27898399 3'AG 27898399 Downstream 86bp 1582 chr1 173446551 173446551 1 + G T SARC 173446551 + 173446531 173446571 41 GTCGCCATGCCCGGAGGTCTGCTTCTCGGGGACGTGGCTCC GTCGCCATGCCCGGAGGTCTTCTTCTCGGGGACGTGGCTCC Direct Loss 0.969335923295132 0 NA NA prediction 0.938671846590264 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173446551 chr1:173446551 synonymous SNV . 0 21 hm7G_associated_SNPs_1613 0 0 1 0 1 PRDX6 chr1:173446631 5'GT 173446631 Upstream 81bp 1583 chr1 156764468 156764468 1 + G A PRAD 156764468 + 156764448 156764488 41 CTTTTCCAGTTTAAGCGGCTGCAGGGCAAGAGGAACCGAGG CTTTTCCAGTTTAAGCGGCTACAGGGCAAGAGGAACCGAGG Direct Loss 0.96930154710035 0 NA NA prediction 0.938603094200699 Functional Loss - PRCC ENSG00000143294 CDS Human protein_coding chr1:156764468 chr1:156764468 synonymous SNV . 0 21 hm7G_associated_SNPs_1614 0 0 1 0 1 PRCC chr1:156764457 3'AG 156764457 Downstream 12bp 1584 chr9 34656750 34656750 1 + G A MESO 34656750 + 34656730 34656770 41 TTCCAGGGACCCAGTGTCCTGGTTTCGGGATGGGGAGCCAA TTCCAGGGACCCAGTGTCCTAGTTTCGGGATGGGGAGCCAA Direct Loss 0.969284577071481 0 NA NA prediction 0.938569154142962 Functional Loss - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34656750 chr9:34656750 stopgain 1.000 1 21 hm7G_associated_SNPs_1615 0 0 0 0 1 IL11RA chr9:34656736 3'AG 34656736 Downstream 15bp 1585 chr5 137521210 137521210 1 + G A CESC 137521210 + 137521190 137521230 41 TTCCCTCTTAGGAGCGGGATGAAAAGATTGAAGAGCTAGAA TTCCCTCTTAGGAGCGGGATAAAAAGATTGAAGAGCTAGAA Direct Loss 0.969184916285 0 NA NA prediction 0.93836983257 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137521210 chr5:137521210 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1617 0 0 1 0 1 KIF20A chr5:137521201 3'AG 137521201 Downstream 10bp 1586 chrX 150154608 150154608 1 + G T LUAD 150154608 + 150154588 150154628 41 ATCGGGAAATGAAGGATTATGGACCAGCTAAGGGAGGCAAG ATCGGGAAATGAAGGATTATTGACCAGCTAAGGGAGGCAAG Direct Loss 0.969180383244522 0 NA NA prediction 0.938360766489044 Functional Loss - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150154608 chrX:150154608 stopgain 1.000 0 21 hm7G_associated_SNPs_1618 0 0 1 0 2 HMGB3 chrX:150154524 3'AG 150154524 Downstream 85bp 1587 chrX 150154608 150154608 1 + G T LUAD 150154608 + 150154588 150154628 41 ATCGGGAAATGAAGGATTATGGACCAGCTAAGGGAGGCAAG ATCGGGAAATGAAGGATTATTGACCAGCTAAGGGAGGCAAG Direct Loss 0.969180383244522 0 NA NA prediction 0.938360766489044 Functional Loss - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150154608 chrX:150154608 stopgain 1.000 0 21 hm7G_associated_SNPs_1618 0 0 1 0 2 HMGB3 chrX:150154663 5'GT 150154663 Upstream 56bp 1588 chr10 43870975 43870975 1 + G T LUAD 43870975 + 43870955 43870995 41 AACCTGCAGCTGAGCGGACTGATCTGCGGAGGGCTCCTGGC AACCTGCAGCTGAGCGGACTTATCTGCGGAGGGCTCCTGGC Direct Loss 0.969177608546623 0 NA NA prediction 0.938355217093246 Functional Loss - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43870975 chr10:43870975 synonymous SNV . 0 21 hm7G_associated_SNPs_1619 0 0 0 0 2 FXYD4 chr10:43870947 3'AG 43870947 Downstream 29bp 1589 chr10 43870975 43870975 1 + G T LUAD 43870975 + 43870955 43870995 41 AACCTGCAGCTGAGCGGACTGATCTGCGGAGGGCTCCTGGC AACCTGCAGCTGAGCGGACTTATCTGCGGAGGGCTCCTGGC Direct Loss 0.969177608546623 0 NA NA prediction 0.938355217093246 Functional Loss - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43870975 chr10:43870975 synonymous SNV . 0 21 hm7G_associated_SNPs_1619 0 0 0 0 2 FXYD4 chr10:43871021 5'GT 43871021 Upstream 47bp 1590 chr1 32669888 32669888 1 + G A PAAD 32669888 + 32669868 32669908 41 TGTGTGGGGAGGAGGAGGACGATGAAGAGGAAGAGGATGGG TGTGTGGGGAGGAGGAGGACAATGAAGAGGAAGAGGATGGG Direct Loss 0.96917006979379 0 NA NA prediction 0.938340139587581 Functional Loss - CCDC28B ENSG00000160050 CDS Human protein_coding chr1:32669888 chr1:32669888 nonsynonymous SNV 0.489 0 21 hm7G_associated_SNPs_1620 0 0 1 0 1 CCDC28B chr1:32669980 5'GT 32669980 Upstream 93bp 1591 chr5 78415161 78415161 1 + G A UCEC 78415161 + 78415141 78415181 41 TTCTATGCGAGTGAAGACAAGCTGGAGAACAGGGGCAACTA TTCTATGCGAGTGAAGACAAACTGGAGAACAGGGGCAACTA Direct Loss 0.969166939098075 0 NA NA prediction 0.93833387819615 Functional Loss - BHMT ENSG00000145692 CDS Human protein_coding chr5:78415161 chr5:78415161 synonymous SNV . 0 21 hm7G_associated_SNPs_1621 0 0 0 0 2 BHMT chr5:78415082 3'AG 78415082 Downstream 80bp 1592 chr5 78415161 78415161 1 + G A UCEC 78415161 + 78415141 78415181 41 TTCTATGCGAGTGAAGACAAGCTGGAGAACAGGGGCAACTA TTCTATGCGAGTGAAGACAAACTGGAGAACAGGGGCAACTA Direct Loss 0.969166939098075 0 NA NA prediction 0.93833387819615 Functional Loss - BHMT ENSG00000145692 CDS Human protein_coding chr5:78415161 chr5:78415161 synonymous SNV . 0 21 hm7G_associated_SNPs_1621 0 0 0 0 2 BHMT chr5:78415200 5'GT 78415200 Upstream 40bp 1593 chr1 220936323 220936323 1 + G A SKCM 220936323 + 220936303 220936343 41 GTAGATTTGAATACCAGGATGGAGAAGAAAATGAAAATGGA GTAGATTTGAATACCAGGATAGAGAAGAAAATGAAAATGGA Direct Loss 0.969161006873303 0 NA NA prediction 0.938322013746605 Functional Loss - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220936323 chr1:220936323 nonsynonymous SNV 0.861 0 21 hm7G_associated_SNPs_1622 0 0 1 0 2 MARC2 chr1:220936252 3'AG 220936252 Downstream 72bp 1594 chr1 220936323 220936323 1 + G A SKCM 220936323 + 220936303 220936343 41 GTAGATTTGAATACCAGGATGGAGAAGAAAATGAAAATGGA GTAGATTTGAATACCAGGATAGAGAAGAAAATGAAAATGGA Direct Loss 0.969161006873303 0 NA NA prediction 0.938322013746605 Functional Loss - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220936323 chr1:220936323 nonsynonymous SNV 0.861 0 21 hm7G_associated_SNPs_1622 0 0 1 0 2 MARC2 chr1:220936392 5'GT 220936392 Upstream 70bp 1595 chr5 64881878 64881878 1 + G A UCEC 64881878 + 64881858 64881898 41 TACTGGTATGGGAGGAGAAAGCATATGGGGAGGAGAATTTG TACTGGTATGGGAGGAGAAAACATATGGGGAGGAGAATTTG Direct Loss 0.969155975874839 0 NA NA prediction 0.938311951749678 Functional Loss - PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64881878 chr5:64881878 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1623 0 0 1 0 1 PPWD1 chr5:64881826 3'AG 64881826 Downstream 53bp 1596 chr7 98254307 98254307 1 + G T OV 98254307 + 98254287 98254327 41 ACAAACTACCTATACGGCAAGATCAAGAAGACGCTGCCTGA ACAAACTACCTATACGGCAATATCAAGAAGACGCTGCCTGA Direct Loss 0.969150265501231 0 NA NA prediction 0.938300531002462 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98254307 chr7:98254307 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1624 0 0 1 0 1 NPTX2 chr7:98254234 3'AG 98254234 Downstream 74bp 1597 chrX 152958543 152958543 1 + G A UCEC 152958543 + 152958523 152958563 41 TACGTGGTCCTGGTCGTGCTGCTGGTGCGTGGAGTGCTGCT TACGTGGTCCTGGTCGTGCTACTGGTGCGTGGAGTGCTGCT Direct Loss 0.969137378879641 0 NA NA prediction 0.938274757759281 Functional Loss - SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958543 chrX:152958543 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_1625 0 0 1 0 2 SLC6A8 chrX:152958496 3'AG 152958496 Downstream 48bp 1598 chrX 152958543 152958543 1 + G A UCEC 152958543 + 152958523 152958563 41 TACGTGGTCCTGGTCGTGCTGCTGGTGCGTGGAGTGCTGCT TACGTGGTCCTGGTCGTGCTACTGGTGCGTGGAGTGCTGCT Direct Loss 0.969137378879641 0 NA NA prediction 0.938274757759281 Functional Loss - SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958543 chrX:152958543 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_1625 0 0 1 0 2 SLC6A8 chrX:152958630 5'GT 152958630 Upstream 88bp 1599 chr5 170819936 170819936 1 + G T SARC 170819936 + 170819916 170819956 41 AGAAAAAAGTAAAACTTGCTGCTGATGAAGATGATGACGAT AGAAAAAAGTAAAACTTGCTTCTGATGAAGATGATGACGAT Direct Loss 0.969124913452089 0 NA NA prediction 0.938249826904177 Functional Loss - NPM1 ENSG00000181163 CDS Human protein_coding chr5:170819936 chr5:170819936 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_1626 0 0 0 0 1 NPM1 chr5:170819918 3'AG 170819918 Downstream 19bp 1600 chr20 42233700 42233700 1 + G A SKCM 42233700 + 42233680 42233720 41 TCATTGATGAGGAAAGCAGTGGAAACAATGCCCAGTGAGTG TCATTGATGAGGAAAGCAGTAGAAACAATGCCCAGTGAGTG Direct Loss 0.96912382944508 0 NA NA prediction 0.93824765889016 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42233700 chr20:42233700 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1627 0 0 1 0 2 IFT52 chr20:42233642 3'AG 42233642 Downstream 59bp 1601 chr20 42233700 42233700 1 + G A SKCM 42233700 + 42233680 42233720 41 TCATTGATGAGGAAAGCAGTGGAAACAATGCCCAGTGAGTG TCATTGATGAGGAAAGCAGTAGAAACAATGCCCAGTGAGTG Direct Loss 0.96912382944508 0 NA NA prediction 0.93824765889016 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42233700 chr20:42233700 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1627 0 0 1 0 2 IFT52 chr20:42233713 5'GT 42233713 Upstream 14bp 1602 chr17 15638665 15638665 1 + G A SKCM 15638665 + 15638645 15638685 41 ATGACTTTGTCTTGCAGGATGGAGATGGATGGGGACCCGTA ATGACTTTGTCTTGCAGGATAGAGATGGATGGGGACCCGTA Direct Loss 0.969061958210003 0 NA NA prediction 0.938123916420005 Functional Loss - TBC1D26 ENSG00000214946 CDS Human antisense chr17:15638665 chr17:15638665 nonsynonymous SNV 0.190 2 21 hm7G_associated_SNPs_1628 0 0 0 0 2 TBC1D26 chr17:15638662 3'AG 15638662 Downstream 4bp 1603 chr17 15638665 15638665 1 + G A SKCM 15638665 + 15638645 15638685 41 ATGACTTTGTCTTGCAGGATGGAGATGGATGGGGACCCGTA ATGACTTTGTCTTGCAGGATAGAGATGGATGGGGACCCGTA Direct Loss 0.969061958210003 0 NA NA prediction 0.938123916420005 Functional Loss - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15638665 chr17:15638665 nonsynonymous SNV 0.190 2 21 hm7G_associated_SNPs_1628 0 0 0 0 2 TBC1D26 chr17:15638737 5'GT 15638737 Upstream 73bp 1604 chr3 8787268 8787268 1 + G A rs61147808 8787268 + 8787248 8787288 41 ACCTACAGCTTTGACGGCGTGTGGAAGGTGAGCTACACCAC ACCTACAGCTTTGACGGCGTATGGAAGGTGAGCTACACCAC Direct Loss 0.969031980218583 0 NA NA prediction 0.938063960437165 Functional Loss - CAV3 ENSG00000182533 CDS Human protein_coding chr3:8787268 chr3:8787268 synonymous SNV . 0 21 hm7G_associated_SNPs_1630 8 0 0 0 1 CAV3 chr3:8787212 3'AG 8787212 Downstream 57bp 1605 chr1 1455564 1455564 1 + G A rs138007437 1455564 + 1455544 1455584 41 CTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGC CTGCGGCACAAGAATGAGATACTGCGAGTGGAGGCCGAGGC Direct Loss 0.969030145084561 0 NA NA prediction 0.938060290169123 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1455564 chr1:1455564 nonsynonymous SNV 0.042 0 21 hm7G_associated_SNPs_1631 0 0 1 0 1 ATAD3A chr1:1455521 3'AG 1455521 Downstream 44bp 1606 chr12 124069327 124069327 1 + G A rs142186488 124069327 + 124069307 124069347 41 AAGATGGGCCTCATCTTCGAGGTGGCGGAGGGCGGCTTCCT AAGATGGGCCTCATCTTCGAAGTGGCGGAGGGCGGCTTCCT Direct Loss 0.968865757934292 0 NA NA prediction 0.937731515868584 Functional Loss - TMED2 ENSG00000086598 CDS Human protein_coding chr12:124069327 chr12:124069327 synonymous SNV . 0 21 hm7G_associated_SNPs_1635 0 0 1 0 1 TMED2 chr12:124069363 5'GT 124069363 Upstream 37bp 1607 chr1 41481853 41481853 1 - C T HNSC 41481853 - 41481833 41481873 41 GAAGAGAAGATGAAGGCGCTGATGATGGAGAAGGAGCAGCT GAAGAGAAGATGAAGGCGCTAATGATGGAGAAGGAGCAGCT Direct Loss 0.968843728717959 0 NA NA prediction 0.937687457435919 Functional Loss - SLFNL1 ENSG00000171790 CDS Human protein_coding chr1:41481853 chr1:41481853 synonymous SNV . 0 21 hm7G_associated_SNPs_1636 0 0 0 0 1 SLFNL1 chr1:41481900 3'AG 41481900 Downstream 48bp 1608 chr2 85818874 85818874 1 + G C LUAD 85818874 + 85818854 85818894 41 ATAGAGTTGGAGCGGTGCCAGCAGCAGGCGAACGAGGTGAC ATAGAGTTGGAGCGGTGCCACCAGCAGGCGAACGAGGTGAC Direct Loss 0.968748672173199 0 NA NA prediction 0.937497344346399 Functional Loss - VAMP5 ENSG00000168899 CDS Human protein_coding chr2:85818874 chr2:85818874 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_1637 0 0 0 0 1 VAMP5 chr2:85818848 3'AG 85818848 Downstream 27bp 1609 chr11 550143 550143 1 + G T LUSC 550143 + 550123 550163 41 CTGGAACAATTGGAGGTGCTGGACCTGGAGGGCAACAGCGT CTGGAACAATTGGAGGTGCTTGACCTGGAGGGCAACAGCGT Direct Loss 0.968689804370488 0 NA NA prediction 0.937379608740977 Functional Loss - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:550143 chr11:550143 synonymous SNV . 0 21 hm7G_associated_SNPs_1638 0 0 0 0 1 LRRC56 chr11:550072 3'AG 550072 Downstream 72bp 1610 chr2 47612338 47612338 1 + G A LUSC 47612338 + 47612318 47612358 41 AGAAGAGAATGGCAAAGTATGAGAAGGCTGAGGTAAATGGA AGAAGAGAATGGCAAAGTATAAGAAGGCTGAGGTAAATGGA Direct Loss 0.968656712469062 0 NA NA prediction 0.937313424938125 Functional Loss - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47612338 chr2:47612338 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_1640 0 0 1 0 2 EPCAM chr2:47612305 3'AG 47612305 Downstream 34bp 1611 chr2 47612338 47612338 1 + G A LUSC 47612338 + 47612318 47612358 41 AGAAGAGAATGGCAAAGTATGAGAAGGCTGAGGTAAATGGA AGAAGAGAATGGCAAAGTATAAGAAGGCTGAGGTAAATGGA Direct Loss 0.968656712469062 0 NA NA prediction 0.937313424938125 Functional Loss - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47612338 chr2:47612338 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_1640 0 0 1 0 2 EPCAM chr2:47612349 5'GT 47612349 Upstream 12bp 1612 chr11 65770766 65770766 1 + G T LUAD 65770766 + 65770746 65770786 41 GACTTCGTGGCAGAGCCCATGGGGGAGAAGCCAGTGGGGAG GACTTCGTGGCAGAGCCCATTGGGGAGAAGCCAGTGGGGAG Direct Loss 0.968641892484349 0 NA NA prediction 0.937283784968697 Functional Loss - BANF1 ENSG00000175334 CDS Human protein_coding chr11:65770766 chr11:65770766 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1641 0 0 1 0 2 BANF1 chr11:65770706 3'AG 65770706 Downstream 61bp 1613 chr11 65770766 65770766 1 + G T LUAD 65770766 + 65770746 65770786 41 GACTTCGTGGCAGAGCCCATGGGGGAGAAGCCAGTGGGGAG GACTTCGTGGCAGAGCCCATTGGGGAGAAGCCAGTGGGGAG Direct Loss 0.968641892484349 0 NA NA prediction 0.937283784968697 Functional Loss - BANF1 ENSG00000175334 CDS Human protein_coding chr11:65770766 chr11:65770766 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1641 0 0 1 0 2 BANF1 chr11:65770844 5'GT 65770844 Upstream 79bp 1614 chr12 69991012 69991012 1 + G T BLCA 69991012 + 69990992 69991032 41 AAACTTATCGAGGAAGTCATGATTGGAGAAGACAAACTCAT AAACTTATCGAGGAAGTCATTATTGGAGAAGACAAACTCAT Direct Loss 0.968629067378869 0 NA NA prediction 0.937258134757738 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991012 chr12:69991012 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1642 0 0 1 0 2 CCT2 chr12:69990936 3'AG 69990936 Downstream 77bp 1615 chr12 69991012 69991012 1 + G T BLCA 69991012 + 69990992 69991032 41 AAACTTATCGAGGAAGTCATGATTGGAGAAGACAAACTCAT AAACTTATCGAGGAAGTCATTATTGGAGAAGACAAACTCAT Direct Loss 0.968629067378869 0 NA NA prediction 0.937258134757738 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991012 chr12:69991012 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1642 0 0 1 0 2 CCT2 chr12:69991055 5'GT 69991055 Upstream 44bp 1616 chr2 233546354 233546354 1 + G T UCEC 233546354 + 233546334 233546374 41 TTGAAAGCTGAGCAAGATGAGCGGAAGCGGGAGGAGGAGGA TTGAAAGCTGAGCAAGATGATCGGAAGCGGGAGGAGGAGGA Direct Loss 0.968594898417872 0 NA NA prediction 0.937189796835744 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233546354 chr2:233546354 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1643 0 0 0 0 1 EFHD1 chr2:233546295 3'AG 233546295 Downstream 60bp 1617 chr2 234255520 234255520 1 + G A CESC 234255520 + 234255500 234255540 41 TGAAAGATGCAGGAGAAGCTGAGGAGGGGAAGAGAGACAAG TGAAAGATGCAGGAGAAGCTAAGGAGGGGAAGAGAGACAAG Direct Loss 0.96858280191363 0 NA NA prediction 0.93716560382726 Functional Loss - SAG ENSG00000130561 CDS Human protein_coding chr2:234255520 chr2:234255520 nonsynonymous SNV 0.074 1 21 hm7G_associated_SNPs_1644 0 0 0 0 1 SAG chr2:234255453 3'AG 234255453 Downstream 68bp 1618 chr13 111980602 111980602 1 + G A SKCM 111980602 + 111980582 111980622 41 ATGCCAGGAGCTCGGGTGCTGCTTCTACGAAGGCGTCTGCT ATGCCAGGAGCTCGGGTGCTACTTCTACGAAGGCGTCTGCT Direct Loss 0.968501504761897 0 NA NA prediction 0.937003009523794 Functional Loss - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111980602 chr13:111980602 nonsynonymous SNV 0.446 3 21 hm7G_associated_SNPs_1645 0 0 0 0 1 TEX29 chr13:111980640 5'GT 111980640 Upstream 39bp 1619 chr11 125478177 125478177 1 + G T LUAD 125478177 + 125478157 125478197 41 ACCGTGGGAGCTCTCCTCATGCTGACAGGTAGGGAAGGCTC ACCGTGGGAGCTCTCCTCATTCTGACAGGTAGGGAAGGCTC Direct Loss 0.968493789406349 0 NA NA prediction 0.936987578812698 Functional Loss - STT3A ENSG00000134910 CDS Human protein_coding chr11:125478177 chr11:125478177 nonsynonymous SNV 0.880 1 21 hm7G_associated_SNPs_1646 0 0 1 0 1 STT3A chr11:125478184 5'GT 125478184 Upstream 8bp 1620 chr20 16730560 16730560 1 + G T COAD 16730560 + 16730540 16730580 41 GCACTTAGGTTTATGGTGATGGCCAGGACGAGATGGGAGTC GCACTTAGGTTTATGGTGATTGCCAGGACGAGATGGGAGTC Direct Loss 0.968441872638164 0 NA NA prediction 0.936883745276328 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730560 chr20:16730560 nonsynonymous SNV 0.253 0 21 hm7G_associated_SNPs_1648 0 0 0 0 2 OTOR chr20:16730548 3'AG 16730548 Downstream 13bp 1621 chr20 16730560 16730560 1 + G T COAD 16730560 + 16730540 16730580 41 GCACTTAGGTTTATGGTGATGGCCAGGACGAGATGGGAGTC GCACTTAGGTTTATGGTGATTGCCAGGACGAGATGGGAGTC Direct Loss 0.968441872638164 0 NA NA prediction 0.936883745276328 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730560 chr20:16730560 nonsynonymous SNV 0.253 0 21 hm7G_associated_SNPs_1648 0 0 0 0 2 OTOR chr20:16730655 5'GT 16730655 Upstream 96bp 1622 chr13 48615188 48615188 1 + G A UCEC 48615188 + 48615168 48615208 41 CATTATGTTACTATATTAATGAAAGGAGAAGTGGATGTGAC CATTATGTTACTATATTAATAAAAGGAGAAGTGGATGTGAC Direct Loss 0.968427718875294 0 NA NA prediction 0.936855437750587 Functional Loss - NUDT15 ENSG00000136159 CDS Human protein_coding chr13:48615188 chr13:48615188 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1649 0 0 1 0 1 NUDT15 chr13:48615252 5'GT 48615252 Upstream 65bp 1623 chr10 70101407 70101407 1 + G A SKCM 70101407 + 70101387 70101427 41 GCTCTGGCATGGGAGGTTCTGGAATGGGAGGCTACGGAAGA GCTCTGGCATGGGAGGTTCTAGAATGGGAGGCTACGGAAGA Direct Loss 0.968405361452213 0 NA NA prediction 0.936810722904426 Functional Loss - HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70101407 chr10:70101407 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1650 0 0 1 0 2 HNRNPH3 chr10:70101342 3'AG 70101342 Downstream 66bp 1624 chr10 70101407 70101407 1 + G A SKCM 70101407 + 70101387 70101427 41 GCTCTGGCATGGGAGGTTCTGGAATGGGAGGCTACGGAAGA GCTCTGGCATGGGAGGTTCTAGAATGGGAGGCTACGGAAGA Direct Loss 0.968405361452213 0 NA NA prediction 0.936810722904426 Functional Loss - HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70101407 chr10:70101407 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1650 0 0 1 0 2 HNRNPH3 chr10:70101437 5'GT 70101437 Upstream 31bp 1625 chr5 50685702 50685702 1 + G C LUSC 50685702 + 50685682 50685722 41 CTGGTTTCAAAACAAGCGGTGCAAGGACAAGAAGCGAAGCA CTGGTTTCAAAACAAGCGGTCCAAGGACAAGAAGCGAAGCA Direct Loss 0.968403878152978 0 NA NA prediction 0.936807756305957 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685702 chr5:50685702 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_1651 0 0 0 0 1 ISL1 chr5:50685766 5'GT 50685766 Upstream 65bp 1626 chr3 149216599 149216599 1 + G A SKCM 149216599 + 149216579 149216619 41 ACCCTCTTCTCCATCCTGCTGGTCGTAGGAGGAATCCAGAT ACCCTCTTCTCCATCCTGCTAGTCGTAGGAGGAATCCAGAT Direct Loss 0.968395186147326 0 NA NA prediction 0.936790372294653 Functional Loss - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149216599 chr3:149216599 synonymous SNV . 0 21 hm7G_associated_SNPs_1652 0 0 0 0 2 TM4SF4 chr3:149216509 3'AG 149216509 Downstream 91bp 1627 chr3 149216599 149216599 1 + G A SKCM 149216599 + 149216579 149216619 41 ACCCTCTTCTCCATCCTGCTGGTCGTAGGAGGAATCCAGAT ACCCTCTTCTCCATCCTGCTAGTCGTAGGAGGAATCCAGAT Direct Loss 0.968395186147326 0 NA NA prediction 0.936790372294653 Functional Loss - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149216599 chr3:149216599 synonymous SNV . 0 21 hm7G_associated_SNPs_1652 0 0 0 0 2 TM4SF4 chr3:149216698 5'GT 149216698 Upstream 100bp 1628 chr2 219232241 219232241 1 + G T SKCM 219232241 + 219232221 219232261 41 TCGAAGTTCCTGGACCGGAAGGTGAGGGGAGGCTCCACCAG TCGAAGTTCCTGGACCGGAATGTGAGGGGAGGCTCCACCAG Direct Loss 0.968377270359473 0 NA NA prediction 0.936754540718945 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219232241 chr2:219232241 nonsynonymous SNV 0.943 4 21 hm7G_associated_SNPs_1653 0 0 0 0 2 CATIP chr2:219232153 3'AG 219232153 Downstream 89bp 1629 chr2 219232241 219232241 1 + G T SKCM 219232241 + 219232221 219232261 41 TCGAAGTTCCTGGACCGGAAGGTGAGGGGAGGCTCCACCAG TCGAAGTTCCTGGACCGGAATGTGAGGGGAGGCTCCACCAG Direct Loss 0.968377270359473 0 NA NA prediction 0.936754540718945 Functional Loss - CATIP ENSG00000158428 CDS Human protein_coding chr2:219232241 chr2:219232241 nonsynonymous SNV 0.943 4 21 hm7G_associated_SNPs_1653 0 0 0 0 2 CATIP chr2:219232241 5'GT 219232241 Upstream 1bp 1630 chr9 140083594 140083594 1 + G A BLCA 140083594 + 140083574 140083614 41 GAGGACGAGAAGCAGCGGCTGCAGAATGAGGTGAGGCAGCT GAGGACGAGAAGCAGCGGCTACAGAATGAGGTGAGGCAGCT Direct Loss 0.968364249302288 0 NA NA prediction 0.936728498604576 Functional Loss - SSNA1 ENSG00000176101 CDS Human protein_coding chr9:140083594 chr9:140083594 synonymous SNV . 0 21 hm7G_associated_SNPs_1654 0 0 1 0 1 SSNA1 chr9:140083518 3'AG 140083518 Downstream 77bp 1631 chr8 37914630 37914630 1 + G C LUSC 37914630 + 37914610 37914650 41 ATCTATGACCGGAAATTCCTGATGGAGTGTCGGAACTCACC ATCTATGACCGGAAATTCCTCATGGAGTGTCGGAACTCACC Direct Loss 0.968356478639658 0 NA NA prediction 0.936712957279317 Functional Loss - EIF4EBP1 ENSG00000187840 CDS Human protein_coding chr8:37914630 chr8:37914630 synonymous SNV . 0 21 hm7G_associated_SNPs_1655 0 0 1 0 1 EIF4EBP1 chr8:37914599 3'AG 37914599 Downstream 32bp 1632 chr3 111732266 111732266 1 + G A COAD 111732266 + 111732246 111732286 41 TCCTTGTCCAGGAAAGCCCAGCAGAATCGGAGAGGCTTTTC TCCTTGTCCAGGAAAGCCCAACAGAATCGGAGAGGCTTTTC Direct Loss 0.968342184265503 0 NA NA prediction 0.936684368531006 Functional Loss - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111732266 chr3:111732266 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1656 0 0 0 0 1 TAGLN3 chr3:111732257 3'AG 111732257 Downstream 10bp 1633 chr9 104319831 104319831 1 + G T UCEC 104319831 + 104319811 104319851 41 AGATCCATAAGTTGCTTAAAGAAGAGAAGGAGGAGCTGGCA AGATCCATAAGTTGCTTAAATAAGAGAAGGAGGAGCTGGCA Direct Loss 0.968321485383999 0 NA NA prediction 0.936642970767999 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104319831 chr9:104319831 stopgain 1.000 1 21 hm7G_associated_SNPs_1657 0 0 1 0 1 RNF20 chr9:104319878 5'GT 104319878 Upstream 48bp 1634 chr1 36054073 36054073 1 + G T THYM 36054073 + 36054053 36054093 41 AGCTCAACGTCCAAGTACAAGGTGACGGTGGGGGAGGTGCA AGCTCAACGTCCAAGTACAATGTGACGGTGGGGGAGGTGCA Direct Loss 0.968212245607729 0 NA NA prediction 0.936424491215458 Functional Loss - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36054073 chr1:36054073 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1659 0 0 0 0 1 TFAP2E chr1:36054153 5'GT 36054153 Upstream 81bp 1635 chr9 117396113 117396113 1 + G A UCEC 117396113 + 117396093 117396133 41 CTCCTGAGACACCGGGTGCTGCTGGGGGTGACAGACACAGT CTCCTGAGACACCGGGTGCTACTGGGGGTGACAGACACAGT Direct Loss 0.968198131882074 0 NA NA prediction 0.936396263764147 Functional Loss - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117396113 chr9:117396113 synonymous SNV . 0 21 hm7G_associated_SNPs_1660 0 0 0 0 2 TMEM268 chr9:117396048 3'AG 117396048 Downstream 66bp 1636 chr9 117396113 117396113 1 + G A UCEC 117396113 + 117396093 117396133 41 CTCCTGAGACACCGGGTGCTGCTGGGGGTGACAGACACAGT CTCCTGAGACACCGGGTGCTACTGGGGGTGACAGACACAGT Direct Loss 0.968198131882074 0 NA NA prediction 0.936396263764147 Functional Loss - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117396113 chr9:117396113 synonymous SNV . 0 21 hm7G_associated_SNPs_1660 0 0 0 0 2 TMEM268 chr9:117396158 5'GT 117396158 Upstream 46bp 1637 chr19 49703689 49703689 1 + G A COAD 49703689 + 49703669 49703709 41 ATCGTCATCGTGAGCAAGATGGTGAGGCAGGGGCGGGGCCA ATCGTCATCGTGAGCAAGATAGTGAGGCAGGGGCGGGGCCA Direct Loss 0.96818980985801 0 NA NA prediction 0.936379619716019 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49703689 chr19:49703689 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_1661 0 0 0 0 1 TRPM4 chr19:49703689 5'GT 49703689 Upstream 1bp 1638 chr19 15124540 15124540 1 + G A CESC 15124540 + 15124520 15124560 41 AAAGAGGAGCTGAAAAGCATGAAGAGGAAAATGGAGAGAGA AAAGAGGAGCTGAAAAGCATAAAGAGGAAAATGGAGAGAGA Direct Loss 0.968168292010104 0 NA NA prediction 0.936336584020209 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15124540 chr19:15124540 nonsynonymous SNV 0.956 0 21 hm7G_associated_SNPs_1662 0 0 0 0 2 CCDC105 chr19:15124484 3'AG 15124484 Downstream 57bp 1639 chr19 15124540 15124540 1 + G A CESC 15124540 + 15124520 15124560 41 AAAGAGGAGCTGAAAAGCATGAAGAGGAAAATGGAGAGAGA AAAGAGGAGCTGAAAAGCATAAAGAGGAAAATGGAGAGAGA Direct Loss 0.968168292010104 0 NA NA prediction 0.936336584020209 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15124540 chr19:15124540 nonsynonymous SNV 0.956 0 21 hm7G_associated_SNPs_1662 0 0 0 0 2 CCDC105 chr19:15124588 5'GT 15124588 Upstream 49bp 1640 chr2 73478365 73478365 1 + G A STAD 73478365 + 73478345 73478385 41 TCTCTGCAGAATGATTCAGTGGTGGCTGGTGGCGGGGCCAT TCTCTGCAGAATGATTCAGTAGTGGCTGGTGGCGGGGCCAT Direct Loss 0.968138376740058 0 NA NA prediction 0.936276753480116 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73478365 chr2:73478365 synonymous SNV . 0 21 hm7G_associated_SNPs_1663 0 0 1 0 1 CCT7 chr2:73478354 3'AG 73478354 Downstream 12bp 1641 chr1 28086093 28086093 1 + G A BLCA 28086093 + 28086073 28086113 41 TCGCAGATGAGAGCCAAAATGAACCAGATGGAGAAAACCCA TCGCAGATGAGAGCCAAAATAAACCAGATGGAGAAAACCCA Direct Loss 0.968117408291953 0 NA NA prediction 0.936234816583906 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28086093 chr1:28086093 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1664 0 0 1 0 2 FAM76A chr1:28086037 3'AG 28086037 Downstream 57bp 1642 chr1 28086093 28086093 1 + G A BLCA 28086093 + 28086073 28086113 41 TCGCAGATGAGAGCCAAAATGAACCAGATGGAGAAAACCCA TCGCAGATGAGAGCCAAAATAAACCAGATGGAGAAAACCCA Direct Loss 0.968117408291953 0 NA NA prediction 0.936234816583906 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28086093 chr1:28086093 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1664 0 0 1 0 2 FAM76A chr1:28086138 5'GT 28086138 Upstream 46bp 1643 chr1 46743557 46743557 1 + G A SKCM 46743557 + 46743537 46743577 41 GCACTGAGCAGCTGTGTGGTGGATGAGGAGCAGGATGTAGA GCACTGAGCAGCTGTGTGGTAGATGAGGAGCAGGATGTAGA Direct Loss 0.968107748426396 0 NA NA prediction 0.936215496852792 Functional Loss - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46743557 chr1:46743557 synonymous SNV . 0 21 hm7G_associated_SNPs_1665 0 0 1 0 2 RAD54L chr1:46743489 3'AG 46743489 Downstream 69bp 1644 chr1 46743557 46743557 1 + G A SKCM 46743557 + 46743537 46743577 41 GCACTGAGCAGCTGTGTGGTGGATGAGGAGCAGGATGTAGA GCACTGAGCAGCTGTGTGGTAGATGAGGAGCAGGATGTAGA Direct Loss 0.968107748426396 0 NA NA prediction 0.936215496852792 Functional Loss - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46743557 chr1:46743557 synonymous SNV . 0 21 hm7G_associated_SNPs_1665 0 0 1 0 2 RAD54L chr1:46743652 5'GT 46743652 Upstream 96bp 1645 chr19 13051415 13051415 1 + G A BLCA 13051415 + 13051395 13051435 41 AGAAGCCCGAGGACTGGGATGAAGAGATGGACGGAGAGTGG AGAAGCCCGAGGACTGGGATAAAGAGATGGACGGAGAGTGG Direct Loss 0.968029448538474 0 NA NA prediction 0.936058897076947 Functional Loss - CALR ENSG00000179218 CDS Human protein_coding chr19:13051415 chr19:13051415 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1667 0 0 1 0 2 CALR chr19:13051355 3'AG 13051355 Downstream 61bp 1646 chr19 13051415 13051415 1 + G A BLCA 13051415 + 13051395 13051435 41 AGAAGCCCGAGGACTGGGATGAAGAGATGGACGGAGAGTGG AGAAGCCCGAGGACTGGGATAAAGAGATGGACGGAGAGTGG Direct Loss 0.968029448538474 0 NA NA prediction 0.936058897076947 Functional Loss - CALR ENSG00000179218 CDS Human protein_coding chr19:13051415 chr19:13051415 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1667 0 0 1 0 2 CALR chr19:13051468 5'GT 13051468 Upstream 54bp 1647 chr2 98349602 98349602 1 + G T BLCA 98349602 + 98349582 98349622 41 CTGCAGCTGGTGGAGTATCTGAAGCTGAAGGCGGACGGGCT CTGCAGCTGGTGGAGTATCTTAAGCTGAAGGCGGACGGGCT Direct Loss 0.967991010631327 0 NA NA prediction 0.935982021262654 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98349602 chr2:98349602 synonymous SNV . 0 21 hm7G_associated_SNPs_1668 0 0 0 0 2 ZAP70 chr2:98349588 3'AG 98349588 Downstream 15bp 1648 chr2 98349602 98349602 1 + G T BLCA 98349602 + 98349582 98349622 41 CTGCAGCTGGTGGAGTATCTGAAGCTGAAGGCGGACGGGCT CTGCAGCTGGTGGAGTATCTTAAGCTGAAGGCGGACGGGCT Direct Loss 0.967991010631327 0 NA NA prediction 0.935982021262654 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98349602 chr2:98349602 synonymous SNV . 0 21 hm7G_associated_SNPs_1668 0 0 0 0 2 ZAP70 chr2:98349675 5'GT 98349675 Upstream 74bp 1649 chr11 47605878 47605878 1 + G A LAML 47605878 + 47605858 47605898 41 TCCTGCAGTTACGTTATGATGATGAAGTGAAGCGGGTGGTG TCCTGCAGTTACGTTATGATAATGAAGTGAAGCGGGTGGTG Direct Loss 0.967983263759156 0 NA NA prediction 0.935966527518312 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47605878 chr11:47605878 nonsynonymous SNV 0.291 3 21 hm7G_associated_SNPs_1669 0 0 1 0 1 NDUFS3 chr11:47605866 3'AG 47605866 Downstream 13bp 1650 chr3 9726918 9726918 1 + G A rs115607360 9726918 + 9726898 9726938 41 CATGTTGGTAGATCGGCTCAGCAAAGGGGAGGAGGTGAGTA CATGTTGGTAGATCGGCTCAACAAAGGGGAGGAGGTGAGTA Direct Loss 0.967962662266018 0 NA NA prediction 0.935925324532037 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9726918 chr3:9726918 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1670 1 0 1 0 2 MTMR14 chr3:9726895 3'AG 9726895 Downstream 24bp 1651 chr3 9726918 9726918 1 + G A rs115607360 9726918 + 9726898 9726938 41 CATGTTGGTAGATCGGCTCAGCAAAGGGGAGGAGGTGAGTA CATGTTGGTAGATCGGCTCAACAAAGGGGAGGAGGTGAGTA Direct Loss 0.967962662266018 0 NA NA prediction 0.935925324532037 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9726918 chr3:9726918 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1670 1 0 1 0 2 MTMR14 chr3:9726931 5'GT 9726931 Upstream 14bp 1652 chr11 8707314 8707314 1 + G C UCEC 8707314 + 8707294 8707334 41 AGCAGAAGAGCTGAGGAGAAGATTAAGAGTGTTGGGGGGGC AGCAGAAGAGCTGAGGAGAACATTAAGAGTGTTGGGGGGGC Direct Loss 0.967943393988852 0 NA NA prediction 0.935886787977705 Functional Loss - RPL27A ENSG00000166441 CDS Human protein_coding chr11:8707314 chr11:8707314 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1671 0 0 1 0 1 RPL27A chr11:8707225 3'AG 8707225 Downstream 90bp 1653 chr12 25398285 25398285 1 - C A BLCA 25398285 - 25398265 25398305 41 AACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCC AACTTGTGGTAGTTGGAGCTTGTGGCGTAGGCAAGAGTGCC Direct Loss 0.967823781350953 0 NA NA prediction 0.935647562701907 Functional Loss - KRAS ENSG00000133703 CDS Human protein_coding chr12:25398285 chr12:25398285 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1674 7 0 1 0 2 KRAS chr12:25398208 5'GT 25398208 Upstream 78bp 1654 chr12 25398285 25398285 1 - C A BLCA 25398285 - 25398265 25398305 41 AACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCC AACTTGTGGTAGTTGGAGCTTGTGGCGTAGGCAAGAGTGCC Direct Loss 0.967823781350953 0 NA NA prediction 0.935647562701907 Functional Loss - KRAS ENSG00000133703 CDS Human protein_coding chr12:25398285 chr12:25398285 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1674 7 0 1 0 2 KRAS chr12:25398329 3'AG 25398329 Downstream 45bp 1655 chr10 96447958 96447958 1 + G A GBM 96447958 + 96447938 96447978 41 ACTCTGCGGAATTTTGGGATGGGGAAGAGGAGCATCGAGGA ACTCTGCGGAATTTTGGGATAGGGAAGAGGAGCATCGAGGA Direct Loss 0.967806536817965 0 NA NA prediction 0.935613073635931 Functional Loss - CYP2C18 ENSG00000108242 CDS Human protein_coding chr10:96447958 chr10:96447958 nonsynonymous SNV 0.961 1 21 hm7G_associated_SNPs_1675 0 0 0 0 1 CYP2C18 chr10:96448031 5'GT 96448031 Upstream 74bp 1656 chr2 46707879 46707879 1 + G A UCEC 46707879 + 46707859 46707899 41 GAGGTGGTGATGGAGCAGCTGCAGCAAGAGGCGGCGCCCCG GAGGTGGTGATGGAGCAGCTACAGCAAGAGGCGGCGCCCCG Direct Loss 0.967796161191754 0 NA NA prediction 0.935592322383507 Functional Loss - TMEM247 ENSG00000187600 CDS Human protein_coding chr2:46707879 chr2:46707879 synonymous SNV . 0 21 hm7G_associated_SNPs_1676 0 0 0 0 1 TMEM247 chr2:46707903 5'GT 46707903 Upstream 25bp 1657 chr12 110029114 110029114 1 + G A LUAD 110029114 + 110029094 110029134 41 CTGGAGTGTGAGCGCGTGCTGGGAGAGATGGGGGAAGCCCC CTGGAGTGTGAGCGCGTGCTAGGAGAGATGGGGGAAGCCCC Direct Loss 0.967779775110462 0 NA NA prediction 0.935559550220925 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110029114 chr12:110029114 synonymous SNV . 0 21 hm7G_associated_SNPs_1678 0 0 1 0 2 MVK chr12:110029046 3'AG 110029046 Downstream 69bp 1658 chr12 110029114 110029114 1 + G A LUAD 110029114 + 110029094 110029134 41 CTGGAGTGTGAGCGCGTGCTGGGAGAGATGGGGGAAGCCCC CTGGAGTGTGAGCGCGTGCTAGGAGAGATGGGGGAAGCCCC Direct Loss 0.967779775110462 0 NA NA prediction 0.935559550220925 Functional Loss - MVK ENSG00000110921 CDS Human protein_coding chr12:110029114 chr12:110029114 synonymous SNV . 0 21 hm7G_associated_SNPs_1678 0 0 1 0 2 MVK chr12:110029162 5'GT 110029162 Upstream 49bp 1659 chr4 142154894 142154894 1 + G A CESC 142154894 + 142154874 142154914 41 TCCCTGAAATTTGGCAGGCAGACTGGAGGTGAAGAGGGAGA TCCCTGAAATTTGGCAGGCAAACTGGAGGTGAAGAGGGAGA Direct Loss 0.967745757852979 0 NA NA prediction 0.935491515705957 Functional Loss - ZNF330 ENSG00000109445 CDS Human protein_coding chr4:142154894 chr4:142154894 synonymous SNV . 0 21 hm7G_associated_SNPs_1680 0 0 1 0 1 ZNF330 chr4:142154869 3'AG 142154869 Downstream 26bp 1660 chr5 134113305 134113305 1 + G T UCEC 134113305 + 134113285 134113325 41 AAGCTGAAAAGGAGGGAAATGAAATGGAGGGTGAGGAGTTA AAGCTGAAAAGGAGGGAAATTAAATGGAGGGTGAGGAGTTA Direct Loss 0.967738242239929 0 NA NA prediction 0.935476484479858 Functional Loss - DDX46 ENSG00000145833 CDS Human protein_coding chr5:134113305 chr5:134113305 stopgain 1.000 1 21 hm7G_associated_SNPs_1681 0 0 1 1 1 DDX46 chr5:134113264 3'AG 134113264 Downstream 42bp 1661 chr16 29830884 29830884 1 + G T UCEC 29830884 + 29830864 29830904 41 CCTCTTCTCCAGGAAGCTCAGCCCGGAGCCAGAAACGGGAG CCTCTTCTCCAGGAAGCTCATCCCGGAGCCAGAAACGGGAG Direct Loss 0.9676668517048 0 NA NA prediction 0.9353337034096 Functional Loss - PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29830884 chr16:29830884 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_1682 0 0 1 0 1 PAGR1 chr16:29830876 3'AG 29830876 Downstream 9bp 1662 chr9 140150515 140150515 1 + G A LUAD 140150515 + 140150495 140150535 41 TCGCTTCGGAGGGGAAGGCTGAGGAAAGGTGGGTCAGCGGG TCGCTTCGGAGGGGAAGGCTAAGGAAAGGTGGGTCAGCGGG Direct Loss 0.967649258585995 0 NA NA prediction 0.93529851717199 Functional Loss - NELFB ENSG00000188986 CDS Human protein_coding chr9:140150515 chr9:140150515 nonsynonymous SNV 0.982 1 21 hm7G_associated_SNPs_1683 0 0 1 0 1 NELFB chr9:140150522 5'GT 140150522 Upstream 8bp 1663 chr19 13063580 13063580 1 + G T SKCM 13063580 + 13063560 13063600 41 CTGGCGGACATCTCAGATGTGGAGGGGGAGGTGGGCGCCAT CTGGCGGACATCTCAGATGTTGAGGGGGAGGTGGGCGCCAT Direct Loss 0.967597793894433 0 NA NA prediction 0.935195587788866 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13063580 chr19:13063580 synonymous SNV . 0 21 hm7G_associated_SNPs_1685 0 0 1 0 1 RAD23A chr19:13063503 3'AG 13063503 Downstream 78bp 1664 chr5 68491566 68491566 1 + G C LUAD 68491566 + 68491546 68491586 41 AAATTGAAGACCTGGAAAATGAAATTGAAGAGGTAAAAGTT AAATTGAAGACCTGGAAAATCAAATTGAAGAGGTAAAAGTT Direct Loss 0.96743383812764 0 NA NA prediction 0.934867676255279 Functional Loss - CENPH ENSG00000153044 CDS Human protein_coding chr5:68491566 chr5:68491566 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_1687 0 0 1 0 2 CENPH chr5:68491544 3'AG 68491544 Downstream 23bp 1665 chr5 68491566 68491566 1 + G C LUAD 68491566 + 68491546 68491586 41 AAATTGAAGACCTGGAAAATGAAATTGAAGAGGTAAAAGTT AAATTGAAGACCTGGAAAATCAAATTGAAGAGGTAAAAGTT Direct Loss 0.96743383812764 0 NA NA prediction 0.934867676255279 Functional Loss - CENPH ENSG00000153044 CDS Human protein_coding chr5:68491566 chr5:68491566 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_1687 0 0 1 0 2 CENPH chr5:68491618 5'GT 68491618 Upstream 53bp 1666 chr3 53226165 53226165 1 + G A CESC 53226165 + 53226145 53226185 41 AACTTTGACCAGGAGTTCCTGAACGAGAAGGCGCGCCTCTC AACTTTGACCAGGAGTTCCTAAACGAGAAGGCGCGCCTCTC Direct Loss 0.967399093907122 0 NA NA prediction 0.934798187814243 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53226165 chr3:53226165 synonymous SNV . 0 21 hm7G_associated_SNPs_1689 0 0 1 0 1 PRKCD chr3:53226124 3'AG 53226124 Downstream 42bp 1667 chr16 67702161 67702161 1 + G A ESCA 67702161 + 67702141 67702181 41 AACTATTGCAACCCTGAGCTGAACCAGGCAGGGAAGGGGGA AACTATTGCAACCCTGAGCTAAACCAGGCAGGGAAGGGGGA Direct Loss 0.967295003312027 0 NA NA prediction 0.934590006624054 Functional Loss - C16orf86 ENSG00000159761 CDS Human protein_coding chr16:67702161 chr16:67702161 synonymous SNV . 0 21 hm7G_associated_SNPs_1690 0 0 0 0 1 C16orf86 chr16:67702103 3'AG 67702103 Downstream 59bp 1668 chr1 26515291 26515291 1 + G A SKCM 26515291 + 26515271 26515311 41 GAAGAGGCACTGGAAGGAATGGTACGGGGGCTGAGGCAGGG GAAGAGGCACTGGAAGGAATAGTACGGGGGCTGAGGCAGGG Direct Loss 0.967271713164966 0 NA NA prediction 0.934543426329932 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26515291 chr1:26515291 nonsynonymous SNV 0.964 2 21 hm7G_associated_SNPs_1691 0 0 0 0 1 CNKSR1 chr1:26515263 3'AG 26515263 Downstream 29bp 1669 chr16 85936699 85936699 1 + G A SKCM 85936699 + 85936679 85936719 41 AGTAGCATGTATCCAGGACTGATTTGGGAGAATGAGGAGAA AGTAGCATGTATCCAGGACTAATTTGGGAGAATGAGGAGAA Direct Loss 0.967260300821024 0 NA NA prediction 0.934520601642049 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85936699 chr16:85936699 synonymous SNV . 0 21 hm7G_associated_SNPs_1692 0 0 0 0 2 IRF8 chr16:85936621 3'AG 85936621 Downstream 79bp 1670 chr16 85936699 85936699 1 + G A SKCM 85936699 + 85936679 85936719 41 AGTAGCATGTATCCAGGACTGATTTGGGAGAATGAGGAGAA AGTAGCATGTATCCAGGACTAATTTGGGAGAATGAGGAGAA Direct Loss 0.967260300821024 0 NA NA prediction 0.934520601642049 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85936699 chr16:85936699 synonymous SNV . 0 21 hm7G_associated_SNPs_1692 0 0 0 0 2 IRF8 chr16:85936795 5'GT 85936795 Upstream 97bp 1671 chr1 11810178 11810178 1 + G C UCEC 11810178 + 11810158 11810198 41 GTAGTGCCTACCAGACGATTGACTCAGCAGAGGCGCCCGCA GTAGTGCCTACCAGACGATTCACTCAGCAGAGGCGCCCGCA Direct Loss 0.967219846390112 0 NA NA prediction 0.934439692780224 Functional Loss - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11810178 chr1:11810178 nonsynonymous SNV 0.904 3 21 hm7G_associated_SNPs_1695 0 0 1 2 1 AGTRAP chr1:11810134 3'AG 11810134 Downstream 45bp 1672 chr16 67915891 67915891 1 + G A STAD 67915891 + 67915871 67915911 41 CGAGCACTGGCTGAGGGGCAGCAGCGGGGAGGGCAGCTGCA CGAGCACTGGCTGAGGGGCAACAGCGGGGAGGGCAGCTGCA Direct Loss 0.967148223450296 0 NA NA prediction 0.934296446900593 Functional Loss - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915891 chr16:67915891 synonymous SNV . 0 21 hm7G_associated_SNPs_1699 0 0 1 0 1 EDC4 chr16:67915857 3'AG 67915857 Downstream 35bp 1673 chr1 161128232 161128232 1 + G C UCEC 161128232 + 161128212 161128252 41 GGCTGGCAGTGGAAATCCCTGATCTGATTCAGAAGGGCGTC GGCTGGCAGTGGAAATCCCTCATCTGATTCAGAAGGGCGTC Direct Loss 0.967134469257667 0 NA NA prediction 0.934268938515335 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161128232 chr1:161128232 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1701 0 0 1 0 1 UFC1 chr1:161128202 3'AG 161128202 Downstream 31bp 1674 chrX 47270116 47270116 1 + G C BRCA 47270116 + 47270096 47270136 41 CCAGAGATGATCTTCAAGTTGGAGCGAGGAGAAGAGCTGTG CCAGAGATGATCTTCAAGTTCGAGCGAGGAGAAGAGCTGTG Direct Loss 0.967104550873732 0 NA NA prediction 0.934209101747465 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47270116 chrX:47270116 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1702 0 0 0 0 2 ZNF157 chrX:47270079 3'AG 47270079 Downstream 38bp 1675 chrX 47270116 47270116 1 + G C BRCA 47270116 + 47270096 47270136 41 CCAGAGATGATCTTCAAGTTGGAGCGAGGAGAAGAGCTGTG CCAGAGATGATCTTCAAGTTCGAGCGAGGAGAAGAGCTGTG Direct Loss 0.967104550873732 0 NA NA prediction 0.934209101747465 Functional Loss - ZNF157 ENSG00000147117 CDS Human protein_coding chrX:47270116 chrX:47270116 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1702 0 0 0 0 2 ZNF157 chrX:47270174 5'GT 47270174 Upstream 59bp 1676 chr10 26998618 26998618 1 + G T LUSC 26998618 + 26998598 26998638 41 AAATGTCTGAGTACTACTTTGATGGGAAAGGGAAAGCCTTT AAATGTCTGAGTACTACTTTTATGGGAAAGGGAAAGCCTTT Direct Loss 0.967101848156557 0 NA NA prediction 0.934203696313114 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26998618 chr10:26998618 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1703 0 0 1 0 2 PDSS1 chr10:26998567 3'AG 26998567 Downstream 52bp 1677 chr10 26998618 26998618 1 + G T LUSC 26998618 + 26998598 26998638 41 AAATGTCTGAGTACTACTTTGATGGGAAAGGGAAAGCCTTT AAATGTCTGAGTACTACTTTTATGGGAAAGGGAAAGCCTTT Direct Loss 0.967101848156557 0 NA NA prediction 0.934203696313114 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26998618 chr10:26998618 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1703 0 0 1 0 2 PDSS1 chr10:26998697 5'GT 26998697 Upstream 80bp 1678 chr17 27068449 27068449 1 + G C BRCA 27068449 + 27068429 27068469 41 AGAGAGCGAAGTGTACTCTTGGGGCAAAGGGGCGCGAGGTC AGAGAGCGAAGTGTACTCTTCGGGCAAAGGGGCGCGAGGTC Direct Loss 0.967094776089838 0 NA NA prediction 0.934189552179675 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068449 chr17:27068449 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_1704 0 0 1 0 1 NEK8 chr17:27068431 3'AG 27068431 Downstream 19bp 1679 chr12 53421858 53421858 1 + G A CESC 53421858 + 53421838 53421878 41 GCAGTGGGTATCGCAGGGATGATGACTACAGAGGAGGCGGG GCAGTGGGTATCGCAGGGATAATGACTACAGAGGAGGCGGG Direct Loss 0.967074679510213 0 NA NA prediction 0.934149359020425 Functional Loss - EIF4B ENSG00000063046 CDS Human protein_coding chr12:53421858 chr12:53421858 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_1705 0 0 1 0 1 EIF4B chr12:53421799 3'AG 53421799 Downstream 60bp 1680 chr3 119531652 119531652 1 + G A UCEC 119531652 + 119531632 119531672 41 TGCTCTTTGAAGGTCTCTCTGCAGCTGCGGGGGGAGGATGG TGCTCTTTGAAGGTCTCTCTACAGCTGCGGGGGGAGGATGG Direct Loss 0.967058403059794 0 NA NA prediction 0.934116806119588 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119531652 chr3:119531652 synonymous SNV . 0 21 hm7G_associated_SNPs_1706 0 0 0 0 1 NR1I2 chr3:119531644 3'AG 119531644 Downstream 9bp 1681 chr7 26246012 26246012 1 + G A SKCM 26246012 + 26245992 26246032 41 AAATGGGAAAAAAACAGAATGGAAAGAGTAAAAAAGTTGAA AAATGGGAAAAAAACAGAATAGAAAGAGTAAAAAAGTTGAA Direct Loss 0.967024071644632 0 NA NA prediction 0.934048143289264 Functional Loss - CBX3 ENSG00000122565 CDS Human protein_coding chr7:26246012 chr7:26246012 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1707 0 0 1 0 1 CBX3 chr7:26245988 3'AG 26245988 Downstream 25bp 1682 chr1 28893865 28893865 1 + G A UCEC 28893865 + 28893845 28893885 41 GAAGCGAGCCCTGACGGAGTGCCAGGGAGCAGTGGGACTGG GAAGCGAGCCCTGACGGAGTACCAGGGAGCAGTGGGACTGG Direct Loss 0.96700268476111 0 NA NA prediction 0.934005369522219 Functional Loss - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28893865 chr1:28893865 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1709 0 0 1 0 1 TRNAU1AP chr1:28893806 3'AG 28893806 Downstream 60bp 1683 chr14 39646875 39646875 1 + G A BLCA 39646875 + 39646855 39646895 41 TCCAGGATCAAAATATGGATGAAAAGGGAAAGCAAAGGTAT TCCAGGATCAAAATATGGATAAAAAGGGAAAGCAAAGGTAT Direct Loss 0.966968279082362 0 NA NA prediction 0.933936558164725 Functional Loss - PNN ENSG00000100941 CDS Human protein_coding chr14:39646875 chr14:39646875 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1711 0 0 1 0 2 PNN chr14:39646797 3'AG 39646797 Downstream 79bp 1684 chr14 39646875 39646875 1 + G A BLCA 39646875 + 39646855 39646895 41 TCCAGGATCAAAATATGGATGAAAAGGGAAAGCAAAGGTAT TCCAGGATCAAAATATGGATAAAAAGGGAAAGCAAAGGTAT Direct Loss 0.966968279082362 0 NA NA prediction 0.933936558164725 Functional Loss - PNN ENSG00000100941 CDS Human protein_coding chr14:39646875 chr14:39646875 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1711 0 0 1 0 2 PNN chr14:39646891 5'GT 39646891 Upstream 17bp 1685 chr2 172945083 172945083 1 + G T rs16859967 172945083 + 172945063 172945103 41 CAGTTCGAGCACACGGTTCTGATCACGTCGAGGGGCGCGCA CAGTTCGAGCACACGGTTCTTATCACGTCGAGGGGCGCGCA Direct Loss 0.966959727306982 0 NA NA prediction 0.933919454613964 Functional Loss - METAP1D ENSG00000172878 CDS Human protein_coding chr2:172945083 chr2:172945083 synonymous SNV . 0 21 hm7G_associated_SNPs_1712 0 0 0 0 1 METAP1D chr2:172945056 3'AG 172945056 Downstream 28bp 1686 chr7 140125719 140125719 1 + G T LUAD 140125719 + 140125699 140125739 41 TGGGAAAAGCGGCACGTCCTGTTCGAGGATGCCTGCACACT TGGGAAAAGCGGCACGTCCTTTTCGAGGATGCCTGCACACT Direct Loss 0.966954466781921 0 NA NA prediction 0.933908933563843 Functional Loss - RAB19 ENSG00000146955 CDS Human protein_coding chr7:140125719 chr7:140125719 synonymous SNV . 0 21 hm7G_associated_SNPs_1713 0 0 0 0 1 RAB19 chr7:140125682 3'AG 140125682 Downstream 38bp 1687 chr2 71305464 71305464 1 + G A LUSC 71305464 + 71305444 71305484 41 CCAGGTTTTCTTCTGGCGCTGACCCAGGGCAGAGAGATCCA CCAGGTTTTCTTCTGGCGCTAACCCAGGGCAGAGAGATCCA Direct Loss 0.966942563180273 0 NA NA prediction 0.933885126360546 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71305464 chr2:71305464 synonymous SNV . 0 21 hm7G_associated_SNPs_1715 0 0 1 0 1 NAGK chr2:71305448 3'AG 71305448 Downstream 17bp 1688 chr10 82330026 82330026 1 + G T GBM 82330026 + 82330006 82330046 41 AGATCTCTGAGGAGCTGATTGCAGAGAGGGCGCGGCTGCAG AGATCTCTGAGGAGCTGATTTCAGAGAGGGCGCGGCTGCAG Direct Loss 0.96690243577056 0 NA NA prediction 0.93380487154112 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82330026 chr10:82330026 nonsynonymous SNV 0.950 1 21 hm7G_associated_SNPs_1717 0 0 0 0 1 SH2D4B chr10:82330072 5'GT 82330072 Upstream 47bp 1689 chr10 81904035 81904035 1 + G C ACC 81904035 + 81904015 81904055 41 GTGAAAGGCCTGCTGGGCCTGCTGGAGGAGCTGGCCTGGAA GTGAAAGGCCTGCTGGGCCTCCTGGAGGAGCTGGCCTGGAA Direct Loss 0.966889839353641 0 NA NA prediction 0.933779678707281 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904035 chr10:81904035 synonymous SNV . 0 21 hm7G_associated_SNPs_1718 0 0 0 0 2 PLAC9 chr10:81903979 3'AG 81903979 Downstream 57bp 1690 chr10 81904035 81904035 1 + G C ACC 81904035 + 81904015 81904055 41 GTGAAAGGCCTGCTGGGCCTGCTGGAGGAGCTGGCCTGGAA GTGAAAGGCCTGCTGGGCCTCCTGGAGGAGCTGGCCTGGAA Direct Loss 0.966889839353641 0 NA NA prediction 0.933779678707281 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904035 chr10:81904035 synonymous SNV . 0 21 hm7G_associated_SNPs_1718 0 0 0 0 2 PLAC9 chr10:81904099 5'GT 81904099 Upstream 65bp 1691 chr17 2227841 2227841 1 - C G CESC 2227841 - 2227821 2227861 41 TGGTTTAAACCAGTGGAACTGAGAACGAAGTGGGGCCGGAG TGGTTTAAACCAGTGGAACTCAGAACGAAGTGGGGCCGGAG Direct Loss 0.966843663031855 0 NA NA prediction 0.93368732606371 Functional Loss - TSR1 ENSG00000167721 CDS Human protein_coding chr17:2227841 chr17:2227841 synonymous SNV . 0 21 hm7G_associated_SNPs_1720 0 0 1 0 2 TSR1 chr17:2227798 5'GT 2227798 Upstream 44bp 1692 chr17 2227841 2227841 1 - C G CESC 2227841 - 2227821 2227861 41 TGGTTTAAACCAGTGGAACTGAGAACGAAGTGGGGCCGGAG TGGTTTAAACCAGTGGAACTCAGAACGAAGTGGGGCCGGAG Direct Loss 0.966843663031855 0 NA NA prediction 0.93368732606371 Functional Loss - TSR1 ENSG00000167721 CDS Human protein_coding chr17:2227841 chr17:2227841 synonymous SNV . 0 21 hm7G_associated_SNPs_1720 0 0 1 0 2 TSR1 chr17:2227872 3'AG 2227872 Downstream 32bp 1693 chr11 44941462 44941462 1 + G A UCEC 44941462 + 44941442 44941482 41 TGAAGAGGTGCCGGAGGCCTGCTGCCGGAGGGAACCCCAAA TGAAGAGGTGCCGGAGGCCTACTGCCGGAGGGAACCCCAAA Direct Loss 0.966808729227144 0 NA NA prediction 0.933617458454289 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44941462 chr11:44941462 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_1723 0 0 0 0 2 TSPAN18 chr11:44941368 3'AG 44941368 Downstream 95bp 1694 chr11 44941462 44941462 1 + G A UCEC 44941462 + 44941442 44941482 41 TGAAGAGGTGCCGGAGGCCTGCTGCCGGAGGGAACCCCAAA TGAAGAGGTGCCGGAGGCCTACTGCCGGAGGGAACCCCAAA Direct Loss 0.966808729227144 0 NA NA prediction 0.933617458454289 Functional Loss - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44941462 chr11:44941462 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_1723 0 0 0 0 2 TSPAN18 chr11:44941550 5'GT 44941550 Upstream 89bp 1695 chr12 81111244 81111244 1 + G T LUSC 81111244 + 81111224 81111264 41 ATCCGCTACATCGAGAGCCTGCAGGAGTTGCTGAGAGAGCA ATCCGCTACATCGAGAGCCTTCAGGAGTTGCTGAGAGAGCA Direct Loss 0.966804286118784 0 NA NA prediction 0.933608572237568 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111244 chr12:81111244 synonymous SNV . 0 21 hm7G_associated_SNPs_1724 0 0 0 0 1 MYF5 chr12:81111343 5'GT 81111343 Upstream 100bp 1696 chr1 175097173 175097173 1 + G A COAD 175097173 + 175097153 175097193 41 TCCCTTGTTTGGTAGGAGATGCAGCTGGGACGGGAAGACCA TCCCTTGTTTGGTAGGAGATACAGCTGGGACGGGAAGACCA Direct Loss 0.966802933632775 0 NA NA prediction 0.933605867265549 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175097173 chr1:175097173 nonsynonymous SNV 0.078 0 21 hm7G_associated_SNPs_1725 0 0 0 0 1 TNN chr1:175097168 3'AG 175097168 Downstream 6bp 1697 chr14 23778060 23778060 1 + G T LUAD 23778060 + 23778040 23778080 41 CTATACGGGGACGGGGCCCTGGAGGAGGCGCGGCGTCTGCG CTATACGGGGACGGGGCCCTTGAGGAGGCGCGGCGTCTGCG Direct Loss 0.966765983059555 0 NA NA prediction 0.93353196611911 Functional Loss - BCL2L2 ENSG00000129473 CDS Human protein_coding chr14:23778060 chr14:23778060 synonymous SNV . 0 21 hm7G_associated_SNPs_1726 0 0 1 0 1 BCL2L2 chr14:23778025 3'AG 23778025 Downstream 36bp 1698 chr1 25812215 25812215 1 + G A UCEC 25812215 + 25812195 25812235 41 TTTGTAGAGAAACAGTTAATGGAAGAGAAAAAGAGGAAGAA TTTGTAGAGAAACAGTTAATAGAAGAGAAAAAGAGGAAGAA Direct Loss 0.966763411716079 0 NA NA prediction 0.933526823432157 Functional Loss - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25812215 chr1:25812215 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1727 0 0 1 0 1 TMEM57 chr1:25812286 5'GT 25812286 Upstream 72bp 1699 chr19 36029248 36029248 1 + G A LAML 36029248 + 36029228 36029268 41 CTGGTCCTGCGCGCCTGCATGGAGAAGGGTGTTAAGGTGGT CTGGTCCTGCGCGCCTGCATAGAGAAGGGTGTTAAGGTGGT Direct Loss 0.966747369787739 0 NA NA prediction 0.933494739575478 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36029248 chr19:36029248 stopgain 0.997 0 21 hm7G_associated_SNPs_1728 0 0 0 0 2 GAPDHS chr19:36029209 3'AG 36029209 Downstream 40bp 1700 chr19 36029248 36029248 1 + G A LAML 36029248 + 36029228 36029268 41 CTGGTCCTGCGCGCCTGCATGGAGAAGGGTGTTAAGGTGGT CTGGTCCTGCGCGCCTGCATAGAGAAGGGTGTTAAGGTGGT Direct Loss 0.966747369787739 0 NA NA prediction 0.933494739575478 Functional Loss - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36029248 chr19:36029248 stopgain 0.997 0 21 hm7G_associated_SNPs_1728 0 0 0 0 2 GAPDHS chr19:36029305 5'GT 36029305 Upstream 58bp 1701 chr11 114168808 114168808 1 + G T LUAD 114168808 + 114168788 114168828 41 CCTGCAGGAGCTGGAGAAGTGGCTGAAGAAAGAGCCAGAGG CCTGCAGGAGCTGGAGAAGTTGCTGAAGAAAGAGCCAGAGG Direct Loss 0.966733860876226 0 NA NA prediction 0.933467721752452 Functional Loss - NNMT ENSG00000166741 CDS Human protein_coding chr11:114168808 chr11:114168808 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_1730 0 0 0 0 1 NNMT chr11:114168880 5'GT 114168880 Upstream 73bp 1702 chr6 41011326 41011326 1 + G C BLCA 41011326 + 41011306 41011346 41 TACCTGGTGTGGAAGGACCTGGGAGGGGGCTTGGGGTGGCC TACCTGGTGTGGAAGGACCTCGGAGGGGGCTTGGGGTGGCC Direct Loss 0.966716818473571 0 NA NA prediction 0.933433636947143 Functional Loss - TSPO2 ENSG00000112212 CDS Human protein_coding chr6:41011326 chr6:41011326 synonymous SNV . 0 21 hm7G_associated_SNPs_1731 0 0 0 0 1 TSPO2 chr6:41011296 3'AG 41011296 Downstream 31bp 1703 chr17 18111551 18111551 1 + G T STAD 18111551 + 18111531 18111571 41 AGGCCACGGATCCTGGAGATGGACAAGGAAGAGAACCGGCG AGGCCACGGATCCTGGAGATTGACAAGGAAGAGAACCGGCG Direct Loss 0.966671148192915 0 NA NA prediction 0.93334229638583 Functional Loss - ALKBH5 ENSG00000091542 CDS Human protein_coding chr17:18111551 chr17:18111551 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1732 0 0 1 0 1 ALKBH5 chr17:18111533 3'AG 18111533 Downstream 19bp 1704 chr10 75676214 75676214 1 + G T COAD 75676214 + 75676194 75676234 41 TTTGACTGGAATTGTGAGCTGGGGCCGTGGATGTGCCCTGA TTTGACTGGAATTGTGAGCTTGGGCCGTGGATGTGCCCTGA Direct Loss 0.966661588831986 0 NA NA prediction 0.933323177663973 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75676214 chr10:75676214 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_1734 0 0 0 0 1 PLAU chr10:75676147 3'AG 75676147 Downstream 68bp 1705 chr17 72308204 72308204 1 + G A CESC 72308204 + 72308184 72308224 41 AGGCACCGGGAGATGCGGCTGAAGGAGAAGGGTAAGGCGGA AGGCACCGGGAGATGCGGCTAAAGGAGAAGGGTAAGGCGGA Direct Loss 0.966651130520021 0 NA NA prediction 0.933302261040042 Functional Loss - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72308204 chr17:72308204 synonymous SNV . 0 21 hm7G_associated_SNPs_1735 0 0 0 0 1 DNAI2 chr17:72308142 3'AG 72308142 Downstream 63bp 1706 chr1 12067114 12067114 1 + G T OV 12067114 + 12067094 12067134 41 ACCATGTGCTCTGCAGGTGTGGAAGGCAGTGGGCTGGCGGC ACCATGTGCTCTGCAGGTGTTGAAGGCAGTGGGCTGGCGGC Direct Loss 0.966633307580609 0 NA NA prediction 0.933266615161217 Functional Loss - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12067114 chr1:12067114 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_1736 0 0 1 0 1 MFN2 chr1:12067110 3'AG 12067110 Downstream 5bp 1707 chr2 74742912 74742912 1 + G A COAD 74742912 + 74742892 74742932 41 GCCAGAAGTACCTGGCCTCTGCGGAGAGGGCGGCGCTGGCC GCCAGAAGTACCTGGCCTCTACGGAGAGGGCGGCGCTGGCC Direct Loss 0.966622906470013 0 NA NA prediction 0.933245812940026 Functional Loss - TLX2 ENSG00000115297 CDS Human protein_coding chr2:74742912 chr2:74742912 nonsynonymous SNV 0.604 2 21 hm7G_associated_SNPs_1737 0 0 0 0 1 TLX2 chr2:74742997 5'GT 74742997 Upstream 86bp 1708 chr10 95287764 95287764 1 + G A BLCA 95287764 + 95287744 95287784 41 TCACTTTCCAAGGAGAGACTGAAAACAGAGAAAAAGTTGCC TCACTTTCCAAGGAGAGACTAAAAACAGAGAAAAAGTTGCC Direct Loss 0.966622627031319 0 NA NA prediction 0.933245254062638 Functional Loss - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95287764 chr10:95287764 nonsynonymous SNV 0.640 0 21 hm7G_associated_SNPs_1738 0 0 1 0 1 CEP55 chr10:95287707 3'AG 95287707 Downstream 58bp 1709 chr17 26652576 26652576 1 + G T SARC 26652576 + 26652556 26652596 41 AAGGAGTTCAAAGACCCACTGCTACAGGAGCCCCCAGCCTG AAGGAGTTCAAAGACCCACTTCTACAGGAGCCCCCAGCCTG Direct Loss 0.96660732943148 0 NA NA prediction 0.93321465886296 Functional Loss - TMEM97 ENSG00000109084 CDS Human protein_coding chr17:26652576 chr17:26652576 synonymous SNV . 0 21 hm7G_associated_SNPs_1739 0 0 1 0 2 TMEM97 chr17:26652529 3'AG 26652529 Downstream 48bp 1710 chr17 26652576 26652576 1 + G T SARC 26652576 + 26652556 26652596 41 AAGGAGTTCAAAGACCCACTGCTACAGGAGCCCCCAGCCTG AAGGAGTTCAAAGACCCACTTCTACAGGAGCCCCCAGCCTG Direct Loss 0.96660732943148 0 NA NA prediction 0.93321465886296 Functional Loss - TMEM97 ENSG00000109084 CDS Human protein_coding chr17:26652576 chr17:26652576 synonymous SNV . 0 21 hm7G_associated_SNPs_1739 0 0 1 0 2 TMEM97 chr17:26652673 5'GT 26652673 Upstream 98bp 1711 chr18 9134233 9134233 1 + G C CESC 9134233 + 9134213 9134253 41 GAGGTCTTACCTCTTTGACTGAACCACCCAAGGGACCTGGA GAGGTCTTACCTCTTTGACTCAACCACCCAAGGGACCTGGA Direct Loss 0.966597016156032 0 NA NA prediction 0.933194032312063 Functional Loss - NDUFV2 ENSG00000178127 CDS Human protein_coding chr18:9134233 chr18:9134233 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1740 0 0 1 0 1 NDUFV2 chr18:9134184 3'AG 9134184 Downstream 50bp 1712 chr12 86276043 86276043 1 + G T COAD 86276043 + 86276023 86276063 41 ATACTGGAAATGACAAAAATGGAAAGGAAGAAGTCATAAAG ATACTGGAAATGACAAAAATTGAAAGGAAGAAGTCATAAAG Direct Loss 0.96654597239647 0 NA NA prediction 0.933091944792939 Functional Loss - NTS ENSG00000133636 CDS Human protein_coding chr12:86276043 chr12:86276043 stopgain 0.820 1 21 hm7G_associated_SNPs_1742 0 0 0 0 1 NTS chr12:86276001 3'AG 86276001 Downstream 43bp 1713 chr16 67919721 67919721 1 + G A LGG 67919721 + 67919701 67919741 41 TCTCATCCGCTTGGGGGACAGCATGGGCCGCGGAGGCGAGC TCTCATCCGCTTGGGGGACAACATGGGCCGCGGAGGCGAGC Direct Loss 0.966537434943658 0 NA NA prediction 0.933074869887317 Functional Loss - NRN1L ENSG00000188038 CDS Human protein_coding chr16:67919721 chr16:67919721 nonsynonymous SNV 0.840 0 21 hm7G_associated_SNPs_1743 0 0 1 0 2 NRN1L chr16:67919625 3'AG 67919625 Downstream 97bp 1714 chr16 67919721 67919721 1 + G A LGG 67919721 + 67919701 67919741 41 TCTCATCCGCTTGGGGGACAGCATGGGCCGCGGAGGCGAGC TCTCATCCGCTTGGGGGACAACATGGGCCGCGGAGGCGAGC Direct Loss 0.966537434943658 0 NA NA prediction 0.933074869887317 Functional Loss - NRN1L ENSG00000188038 CDS Human protein_coding chr16:67919721 chr16:67919721 nonsynonymous SNV 0.840 0 21 hm7G_associated_SNPs_1743 0 0 1 0 2 NRN1L chr16:67919757 5'GT 67919757 Upstream 37bp 1715 chr20 29628275 29628275 1 + G A SKCM 29628275 + 29628255 29628295 41 GCTGCTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCA GCTGCTTTATTAGATGCAATAAAGCAGGGGACATAGAAGCA Direct Loss 0.966508734938847 0 NA NA prediction 0.933017469877694 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628275 chr20:29628275 nonsynonymous SNV 0.986 1 21 hm7G_associated_SNPs_1744 0 0 0 0 2 FRG1BP;FRG1DP chr20:29628227 3'AG 29628227 Downstream 49bp 1716 chr20 29628275 29628275 1 + G A SKCM 29628275 + 29628255 29628295 41 GCTGCTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCA GCTGCTTTATTAGATGCAATAAAGCAGGGGACATAGAAGCA Direct Loss 0.966508734938847 0 NA NA prediction 0.933017469877694 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628275 chr20:29628275 nonsynonymous SNV 0.986 1 21 hm7G_associated_SNPs_1744 0 0 0 0 2 FRG1BP;FRG1DP chr20:29628331 5'GT 29628331 Upstream 57bp 1717 chr11 62533156 62533156 1 + G A STAD 62533156 + 62533136 62533176 41 TCAGCAGGACGATGAGATCCGCTTAAAGATTGTGGGGACCC TCAGCAGGACGATGAGATCCACTTAAAGATTGTGGGGACCC Direct Loss 0.966502151382173 0 NA NA prediction 0.933004302764346 Functional Loss - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62533156 chr11:62533156 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1745 0 0 1 0 2 POLR2G chr11:62533125 3'AG 62533125 Downstream 32bp 1718 chr11 62533156 62533156 1 + G A STAD 62533156 + 62533136 62533176 41 TCAGCAGGACGATGAGATCCGCTTAAAGATTGTGGGGACCC TCAGCAGGACGATGAGATCCACTTAAAGATTGTGGGGACCC Direct Loss 0.966502151382173 0 NA NA prediction 0.933004302764346 Functional Loss - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62533156 chr11:62533156 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1745 0 0 1 0 2 POLR2G chr11:62533196 5'GT 62533196 Upstream 41bp 1719 chr1 228285332 228285332 1 + G A rs147354087 228285332 + 228285312 228285352 41 AGCAATGACAGAGAGCGTGTGAACGAGGCCCGTGAGGAGCT AGCAATGACAGAGAGCGTGTAAACGAGGCCCGTGAGGAGCT Direct Loss 0.966496211433741 0 NA NA prediction 0.932992422867483 Functional Loss - ARF1 ENSG00000143761 CDS Human protein_coding chr1:228285332 chr1:228285332 synonymous SNV . 0 21 hm7G_associated_SNPs_1746 0 0 1 0 2 ARF1 chr1:228285292 3'AG 228285292 Downstream 41bp 1720 chr1 228285332 228285332 1 + G A rs147354087 228285332 + 228285312 228285352 41 AGCAATGACAGAGAGCGTGTGAACGAGGCCCGTGAGGAGCT AGCAATGACAGAGAGCGTGTAAACGAGGCCCGTGAGGAGCT Direct Loss 0.966496211433741 0 NA NA prediction 0.932992422867483 Functional Loss - ARF1 ENSG00000143761 CDS Human protein_coding chr1:228285332 chr1:228285332 synonymous SNV . 0 21 hm7G_associated_SNPs_1746 0 0 1 0 2 ARF1 chr1:228285416 5'GT 228285416 Upstream 85bp 1721 chr17 41165610 41165610 1 + G A rs202144105 41165610 + 41165590 41165630 41 TCTTTGGCAAGACTAGGAACGGAGGTGGCGATGTGGACGTT TCTTTGGCAAGACTAGGAACAGAGGTGGCGATGTGGACGTT Direct Loss 0.966481031548553 0 NA NA prediction 0.932962063097106 Functional Loss - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165610 chr17:41165610 nonsynonymous SNV 0.466 4 21 hm7G_associated_SNPs_1747 0 0 1 0 1 IFI35 chr17:41165679 5'GT 41165679 Upstream 70bp 1722 chr7 56123409 56123409 1 + G T SARC 56123409 + 56123389 56123429 41 GTCAAAGTAAGCAGAGAGATGGACAGGGAAACACTTATAGA GTCAAAGTAAGCAGAGAGATTGACAGGGAAACACTTATAGA Direct Loss 0.966441238252468 0 NA NA prediction 0.932882476504936 Functional Loss - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56123409 chr7:56123409 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_1748 0 0 1 0 2 CCT6A chr7:56123317 3'AG 56123317 Downstream 93bp 1723 chr7 56123409 56123409 1 + G T SARC 56123409 + 56123389 56123429 41 GTCAAAGTAAGCAGAGAGATGGACAGGGAAACACTTATAGA GTCAAAGTAAGCAGAGAGATTGACAGGGAAACACTTATAGA Direct Loss 0.966441238252468 0 NA NA prediction 0.932882476504936 Functional Loss - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56123409 chr7:56123409 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_1748 0 0 1 0 2 CCT6A chr7:56123490 5'GT 56123490 Upstream 82bp 1724 chr1 26801616 26801616 1 + G A HNSC 26801616 + 26801596 26801636 41 TCTTTTAGGCACAGAAAGCTGAAGGTGCTGGAGATGCCAAG TCTTTTAGGCACAGAAAGCTAAAGGTGCTGGAGATGCCAAG Direct Loss 0.966421402717097 0 NA NA prediction 0.932842805434193 Functional Loss - HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26801616 chr1:26801616 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1749 0 0 1 0 1 HMGN2 chr1:26801604 3'AG 26801604 Downstream 13bp 1725 chr14 93282695 93282695 1 + G T CESC 93282695 + 93282675 93282715 41 AGCTGGAAGAACTTCGGCATGAGAAAGAGATGCAGAGGGAG AGCTGGAAGAACTTCGGCATTAGAAAGAGATGCAGAGGGAG Direct Loss 0.966278196102612 0 NA NA prediction 0.932556392205224 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93282695 chr14:93282695 stopgain 0.995 1 21 hm7G_associated_SNPs_1752 0 0 1 0 2 GOLGA5 chr14:93282596 3'AG 93282596 Downstream 100bp 1726 chr14 93282695 93282695 1 + G T CESC 93282695 + 93282675 93282715 41 AGCTGGAAGAACTTCGGCATGAGAAAGAGATGCAGAGGGAG AGCTGGAAGAACTTCGGCATTAGAAAGAGATGCAGAGGGAG Direct Loss 0.966278196102612 0 NA NA prediction 0.932556392205224 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93282695 chr14:93282695 stopgain 0.995 1 21 hm7G_associated_SNPs_1752 0 0 1 0 2 GOLGA5 chr14:93282766 5'GT 93282766 Upstream 72bp 1727 chr17 18286823 18286823 1 + G A SKCM 18286823 + 18286803 18286843 41 CAGGCCCACCAGGAGGCCCTGAAGATGGAGTGGCAGAACTT CAGGCCCACCAGGAGGCCCTAAAGATGGAGTGGCAGAACTT Direct Loss 0.966265683755428 0 NA NA prediction 0.932531367510856 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18286823 chr17:18286823 synonymous SNV . 0 21 hm7G_associated_SNPs_1753 0 0 0 0 2 EVPLL chr17:18286806 3'AG 18286806 Downstream 18bp 1728 chr17 18286823 18286823 1 + G A SKCM 18286823 + 18286803 18286843 41 CAGGCCCACCAGGAGGCCCTGAAGATGGAGTGGCAGAACTT CAGGCCCACCAGGAGGCCCTAAAGATGGAGTGGCAGAACTT Direct Loss 0.966265683755428 0 NA NA prediction 0.932531367510856 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18286823 chr17:18286823 synonymous SNV . 0 21 hm7G_associated_SNPs_1753 0 0 0 0 2 EVPLL chr17:18286901 5'GT 18286901 Upstream 79bp 1729 chr1 53073995 53073995 1 + G T ESCA 53073995 + 53073975 53074015 41 CTAGTAGCCCCAGATGGAAAGGTGGTAGGGGCTTGGGACCC CTAGTAGCCCCAGATGGAAATGTGGTAGGGGCTTGGGACCC Direct Loss 0.966211242341168 0 NA NA prediction 0.932422484682336 Functional Loss - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53073995 chr1:53073995 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_1756 0 0 0 0 1 GPX7 chr1:53073934 3'AG 53073934 Downstream 62bp 1730 chr16 78062080 78062080 1 + G T LUSC 78062080 + 78062060 78062100 41 TTGAAGGAAATTCAAGCCCTGCAGACAGGTAAGGTGCAGAC TTGAAGGAAATTCAAGCCCTTCAGACAGGTAAGGTGCAGAC Direct Loss 0.966165037782357 0 NA NA prediction 0.932330075564713 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78062080 chr16:78062080 synonymous SNV . 0 21 hm7G_associated_SNPs_1757 0 0 0 0 2 CLEC3A chr16:78062004 3'AG 78062004 Downstream 77bp 1731 chr16 78062080 78062080 1 + G T LUSC 78062080 + 78062060 78062100 41 TTGAAGGAAATTCAAGCCCTGCAGACAGGTAAGGTGCAGAC TTGAAGGAAATTCAAGCCCTTCAGACAGGTAAGGTGCAGAC Direct Loss 0.966165037782357 0 NA NA prediction 0.932330075564713 Functional Loss - CLEC3A ENSG00000166509 CDS Human protein_coding chr16:78062080 chr16:78062080 synonymous SNV . 0 21 hm7G_associated_SNPs_1757 0 0 0 0 2 CLEC3A chr16:78062087 5'GT 78062087 Upstream 8bp 1732 chr1 210411403 210411403 1 + G A LUAD 210411403 + 210411383 210411423 41 AACACTATGGGAGGCTGACAGCTACGGAGGCCCAAGCCCCC AACACTATGGGAGGCTGACAACTACGGAGGCCCAAGCCCCC Direct Loss 0.966140317333229 0 NA NA prediction 0.932280634666457 Functional Loss - SERTAD4 ENSG00000082497 CDS Human protein_coding chr1:210411403 chr1:210411403 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1758 0 0 1 0 1 SERTAD4 chr1:210411480 5'GT 210411480 Upstream 78bp 1733 chr19 4318422 4318422 1 + G T COAD 4318422 + 4318402 4318442 41 TCCGTGGAGTGGGACGCTATGGGCGGGAAGGTGCAGGATAT TCCGTGGAGTGGGACGCTATTGGCGGGAAGGTGCAGGATAT Direct Loss 0.966116683990723 0 NA NA prediction 0.932233367981447 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4318422 chr19:4318422 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1759 0 0 0 0 1 FSD1 chr19:4318502 5'GT 4318502 Upstream 81bp 1734 chr6 110112691 110112691 1 + G C HNSC 110112691 + 110112671 110112711 41 CTGAGGATGACTCTGGGACTGATCGGGAAGAAGAGGGCTCT CTGAGGATGACTCTGGGACTCATCGGGAAGAAGAGGGCTCT Direct Loss 0.966108547536324 0 NA NA prediction 0.932217095072649 Functional Loss - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110112691 chr6:110112691 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_1760 0 0 1 0 1 FIG4 chr6:110112774 5'GT 110112774 Upstream 84bp 1735 chr4 186274681 186274681 1 + G A SARC 186274681 + 186274661 186274701 41 ACCTGTCAGATTATGGTGATGATGTGGATGGGAGGAAAGAC ACCTGTCAGATTATGGTGATAATGTGGATGGGAGGAAAGAC Direct Loss 0.966080057741255 0 NA NA prediction 0.932160115482511 Functional Loss - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186274681 chr4:186274681 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1761 0 0 1 0 2 SNX25 chr4:186274639 3'AG 186274639 Downstream 43bp 1736 chr4 186274681 186274681 1 + G A SARC 186274681 + 186274661 186274701 41 ACCTGTCAGATTATGGTGATGATGTGGATGGGAGGAAAGAC ACCTGTCAGATTATGGTGATAATGTGGATGGGAGGAAAGAC Direct Loss 0.966080057741255 0 NA NA prediction 0.932160115482511 Functional Loss - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186274681 chr4:186274681 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1761 0 0 1 0 2 SNX25 chr4:186274756 5'GT 186274756 Upstream 76bp 1737 chr2 219266385 219266385 1 + G A rs2227249 219266385 + 219266365 219266405 41 ATGATGGGGAGGCCCTGCCTGCTCACAGCGGGGCGCCCCTG ATGATGGGGAGGCCCTGCCTACTCACAGCGGGGCGCCCCTG Direct Loss 0.966030609985744 0 NA NA prediction 0.932061219971488 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219266385 chr2:219266385 nonsynonymous SNV 0.032 0 21 hm7G_associated_SNPs_1762 0 0 1 0 2 CTDSP1 chr2:219266287 3'AG 219266287 Downstream 99bp 1738 chr2 219266385 219266385 1 + G A rs2227249 219266385 + 219266365 219266405 41 ATGATGGGGAGGCCCTGCCTGCTCACAGCGGGGCGCCCCTG ATGATGGGGAGGCCCTGCCTACTCACAGCGGGGCGCCCCTG Direct Loss 0.966030609985744 0 NA NA prediction 0.932061219971488 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219266385 chr2:219266385 nonsynonymous SNV 0.032 0 21 hm7G_associated_SNPs_1762 0 0 1 0 2 CTDSP1 chr2:219266435 5'GT 219266435 Upstream 51bp 1739 chr7 98249017 98249017 1 + G T STAD 98249017 + 98248997 98249037 41 GACTTCCGCGAGGTGCTCCAGCAGCGGCTGGGGGAGCTGGA GACTTCCGCGAGGTGCTCCATCAGCGGCTGGGGGAGCTGGA Direct Loss 0.9660095236975 0 NA NA prediction 0.932019047394999 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98249017 chr7:98249017 nonsynonymous SNV 0.973 2 21 hm7G_associated_SNPs_1765 0 0 1 0 1 NPTX2 chr7:98248955 3'AG 98248955 Downstream 63bp 1740 chr20 18118638 18118638 1 + G A UCEC 18118638 + 18118618 18118658 41 GTGGTGCTGGGCCTCTCGGTGCTGCTGACGGCGGCCACAGT GTGGTGCTGGGCCTCTCGGTACTGCTGACGGCGGCCACAGT Direct Loss 0.965995883663149 0 NA NA prediction 0.931991767326299 Functional Loss - PET117 ENSG00000232838 CDS Human protein_coding chr20:18118638 chr20:18118638 synonymous SNV . 0 21 hm7G_associated_SNPs_1766 0 0 1 0 1 PET117 chr20:18118695 5'GT 18118695 Upstream 58bp 1741 chr9 95840246 95840246 1 + G A SKCM 95840246 + 95840226 95840266 41 TGCTGCCTCCTCAAGTGCGTGAAGAAGAGCAAGCGGCGGCG TGCTGCCTCCTCAAGTGCGTAAAGAAGAGCAAGCGGCGGCG Direct Loss 0.965971277827099 0 NA NA prediction 0.931942555654199 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95840246 chr9:95840246 synonymous SNV . 0 21 hm7G_associated_SNPs_1768 0 0 0 0 1 SUSD3 chr9:95840275 5'GT 95840275 Upstream 30bp 1742 chr19 16791370 16791370 1 + G A BLCA 16791370 + 16791350 16791390 41 CACCACGGGTGGTTCGTCATGATTGCAACTGGGTGGGTCAA CACCACGGGTGGTTCGTCATAATTGCAACTGGGTGGGTCAA Direct Loss 0.965959182877098 0 NA NA prediction 0.931918365754197 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16791370 chr19:16791370 nonsynonymous SNV 0.983 4 21 hm7G_associated_SNPs_1769 0 0 1 0 1 TMEM38A chr19:16791392 5'GT 16791392 Upstream 23bp 1743 chr1 228285296 228285296 1 + G A BLCA 228285296 + 228285276 228285316 41 ACTGGCTGCCCGGCAGGCCTGATCTTCGTGGTGGACAGCAA ACTGGCTGCCCGGCAGGCCTAATCTTCGTGGTGGACAGCAA Direct Loss 0.965946649881366 0 NA NA prediction 0.931893299762732 Functional Loss - ARF1 ENSG00000143761 CDS Human protein_coding chr1:228285296 chr1:228285296 synonymous SNV . 0 21 hm7G_associated_SNPs_1770 0 0 1 0 1 ARF1 chr1:228285292 3'AG 228285292 Downstream 5bp 1744 chr2 120125782 120125782 1 + G T LUSC 120125782 + 120125762 120125802 41 AGGCTGAGTTTGAGAAAGCTGCAGAGGAGGTTAGGCACCTT AGGCTGAGTTTGAGAAAGCTTCAGAGGAGGTTAGGCACCTT Direct Loss 0.96593610620952 0 NA NA prediction 0.931872212419041 Functional Loss - DBI ENSG00000155368 CDS Human protein_coding chr2:120125782 chr2:120125782 nonsynonymous SNV 0.958 4 21 hm7G_associated_SNPs_1771 0 0 1 2 2 DBI chr2:120125764 3'AG 120125764 Downstream 19bp 1745 chr2 120125782 120125782 1 + G T LUSC 120125782 + 120125762 120125802 41 AGGCTGAGTTTGAGAAAGCTGCAGAGGAGGTTAGGCACCTT AGGCTGAGTTTGAGAAAGCTTCAGAGGAGGTTAGGCACCTT Direct Loss 0.96593610620952 0 NA NA prediction 0.931872212419041 Functional Loss - DBI ENSG00000155368 CDS Human protein_coding chr2:120125782 chr2:120125782 nonsynonymous SNV 0.958 4 21 hm7G_associated_SNPs_1771 0 0 1 2 2 DBI chr2:120125881 5'GT 120125881 Upstream 100bp 1746 chr13 114435952 114435952 1 + G A UCEC 114435952 + 114435932 114435972 41 AAGGACTTCTGCGAGGCGCTGCTGGAGAAGGACCCGGAGAA AAGGACTTCTGCGAGGCGCTACTGGAGAAGGACCCGGAGAA Direct Loss 0.965932797370524 0 NA NA prediction 0.931865594741048 Functional Loss - GRK1 ENSG00000185974 CDS Human protein_coding chr13:114435952 chr13:114435952 synonymous SNV . 0 21 hm7G_associated_SNPs_1772 0 0 0 0 1 GRK1 chr13:114435857 3'AG 114435857 Downstream 96bp 1747 chr12 56733621 56733621 1 + G T KIRC 56733621 + 56733601 56733641 41 GGCCTCAGCCAACTCCTGCAGGTATGAAGTAGGGGCGTGGA GGCCTCAGCCAACTCCTGCATGTATGAAGTAGGGGCGTGGA Direct Loss 0.965912574857581 0 NA NA prediction 0.931825149715162 Functional Loss - IL23A ENSG00000110944 CDS Human protein_coding chr12:56733621 chr12:56733621 nonsynonymous SNV 0.985 1 21 hm7G_associated_SNPs_1775 0 0 1 0 1 IL23A chr12:56733621 5'GT 56733621 Upstream 1bp 1748 chr8 145161786 145161786 1 + G C LUAD 145161786 + 145161766 145161806 41 GGCAACGAGCTGGACATGGAGCTGGGGGAGGAGGAGGTGGA GGCAACGAGCTGGACATGGACCTGGGGGAGGAGGAGGTGGA Direct Loss 0.965906951968674 0 NA NA prediction 0.931813903937347 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161786 chr8:145161786 nonsynonymous SNV 0.931 0 21 hm7G_associated_SNPs_1776 0 0 1 0 2 MAF1 chr8:145161738 3'AG 145161738 Downstream 49bp 1749 chr8 145161786 145161786 1 + G C LUAD 145161786 + 145161766 145161806 41 GGCAACGAGCTGGACATGGAGCTGGGGGAGGAGGAGGTGGA GGCAACGAGCTGGACATGGACCTGGGGGAGGAGGAGGTGGA Direct Loss 0.965906951968674 0 NA NA prediction 0.931813903937347 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161786 chr8:145161786 nonsynonymous SNV 0.931 0 21 hm7G_associated_SNPs_1776 0 0 1 0 2 MAF1 chr8:145161866 5'GT 145161866 Upstream 81bp 1750 chr17 28506276 28506276 1 + G A LUAD 28506276 + 28506256 28506296 41 AAAAACTGCAAGAGAGAGCTGAAGAAGAAGAAAGAGAAAAG AAAAACTGCAAGAGAGAGCTAAAGAAGAAGAAAGAGAAAAG Direct Loss 0.965900665875784 0 NA NA prediction 0.931801331751568 Functional Loss - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28506276 chr17:28506276 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1777 0 0 1 0 1 NSRP1 chr17:28506315 5'GT 28506315 Upstream 40bp 1751 chr17 42426621 42426621 1 + G A LUSC 42426621 + 42426601 42426641 41 TCAGTTCTGCCCTGTGGCCTGCTGCCTGGACCCCGGAGGAG TCAGTTCTGCCCTGTGGCCTACTGCCTGGACCCCGGAGGAG Direct Loss 0.965850901214218 0 NA NA prediction 0.931701802428435 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42426621 chr17:42426621 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1778 0 0 1 0 1 GRN chr17:42426670 5'GT 42426670 Upstream 50bp 1752 chr19 13879780 13879780 1 + G A rs114003575 13879780 + 13879760 13879800 41 TCTTCATGTGACCTCCGTCTGGAGACCGGCAAGGAGATCAT TCTTCATGTGACCTCCGTCTAGAGACCGGCAAGGAGATCAT Direct Loss 0.965824450840691 0 NA NA prediction 0.931648901681383 Functional Loss - MRI1 ENSG00000037757 CDS Human protein_coding chr19:13879780 chr19:13879780 synonymous SNV . 0 21 hm7G_associated_SNPs_1780 0 0 1 0 1 MRI1 chr19:13879862 5'GT 13879862 Upstream 83bp 1753 chr1 1848419 1848419 1 + G A COAD 1848419 + 1848399 1848439 41 GCCAGGCCCCGTAGGTACGTGCTAATGAACGCAGGGGAGCC GCCAGGCCCCGTAGGTACGTACTAATGAACGCAGGGGAGCC Direct Loss 0.965804925138817 0 NA NA prediction 0.931609850277635 Functional Loss - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848419 chr1:1848419 synonymous SNV . 0 21 hm7G_associated_SNPs_1781 0 0 0 0 1 CALML6 chr1:1848413 3'AG 1848413 Downstream 7bp 1754 chr19 36168793 36168793 1 + G A SKCM 36168793 + 36168773 36168813 41 TGGGTTTGCCATCCTGATGTGGACGGTGAGAGGCGGGGAGC TGGGTTTGCCATCCTGATGTAGACGGTGAGAGGCGGGGAGC Direct Loss 0.965784077225194 0 NA NA prediction 0.931568154450389 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36168793 chr19:36168793 stopgain 0.998 0 21 hm7G_associated_SNPs_1782 0 0 0 1 2 UPK1A chr19:36168714 3'AG 36168714 Downstream 80bp 1755 chr19 36168793 36168793 1 + G A SKCM 36168793 + 36168773 36168813 41 TGGGTTTGCCATCCTGATGTGGACGGTGAGAGGCGGGGAGC TGGGTTTGCCATCCTGATGTAGACGGTGAGAGGCGGGGAGC Direct Loss 0.965784077225194 0 NA NA prediction 0.931568154450389 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36168793 chr19:36168793 stopgain 0.998 0 21 hm7G_associated_SNPs_1782 0 0 0 1 2 UPK1A chr19:36168797 5'GT 36168797 Upstream 5bp 1756 chr8 105361543 105361543 1 + G C OV 105361543 + 105361523 105361563 41 CCAGACAATTTGTTCAGTTTGATGAAAGGGAGAGACATCAA CCAGACAATTTGTTCAGTTTCATGAAAGGGAGAGACATCAA Direct Loss 0.965780244060771 0 NA NA prediction 0.931560488121542 Functional Loss - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361543 chr8:105361543 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_1783 0 0 0 0 1 DCSTAMP chr8:105361607 5'GT 105361607 Upstream 65bp 1757 chr15 78566581 78566581 1 + G A UCEC 78566581 + 78566561 78566601 41 GGTGGAGAAGTGCCCGCTGTGCAAGGGGCGGGGGATGCAGA GGTGGAGAAGTGCCCGCTGTACAAGGGGCGGGGGATGCAGA Direct Loss 0.965733926885851 0 NA NA prediction 0.931467853771703 Functional Loss - DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78566581 chr15:78566581 nonsynonymous SNV 0.989 4 21 hm7G_associated_SNPs_1784 0 0 0 0 1 DNAJA4 chr15:78566539 3'AG 78566539 Downstream 43bp 1758 chr17 76396854 76396854 1 + G A UCEC 76396854 + 76396834 76396874 41 GACTTCTTCACGGAGCTGGTGGACGCGGTGGGGGATGTGTC GACTTCTTCACGGAGCTGGTAGACGCGGTGGGGGATGTGTC Direct Loss 0.965715092591719 0 NA NA prediction 0.931430185183437 Functional Loss - PGS1 ENSG00000087157 CDS Human protein_coding chr17:76396854 chr17:76396854 synonymous SNV . 0 21 hm7G_associated_SNPs_1785 0 0 1 0 2 PGS1 chr17:76396758 3'AG 76396758 Downstream 97bp 1759 chr17 76396854 76396854 1 + G A UCEC 76396854 + 76396834 76396874 41 GACTTCTTCACGGAGCTGGTGGACGCGGTGGGGGATGTGTC GACTTCTTCACGGAGCTGGTAGACGCGGTGGGGGATGTGTC Direct Loss 0.965715092591719 0 NA NA prediction 0.931430185183437 Functional Loss - PGS1 ENSG00000087157 CDS Human protein_coding chr17:76396854 chr17:76396854 synonymous SNV . 0 21 hm7G_associated_SNPs_1785 0 0 1 0 2 PGS1 chr17:76396936 5'GT 76396936 Upstream 83bp 1760 chr16 23691419 23691419 1 + G T LUAD 23691419 + 23691399 23691439 41 CCACAGTCTCTCCTGGAGCTGCACAAGAGGAGGAAAGCCCT CCACAGTCTCTCCTGGAGCTTCACAAGAGGAGGAAAGCCCT Direct Loss 0.965710316562461 0 NA NA prediction 0.931420633124922 Functional Loss - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23691419 chr16:23691419 synonymous SNV . 0 21 hm7G_associated_SNPs_1786 0 0 1 0 1 PLK1 chr16:23691405 3'AG 23691405 Downstream 15bp 1761 chr13 73649879 73649879 1 + G A LAML 73649879 + 73649859 73649899 41 CAAGTGTACCTGGGAAGGCTGCGACTGGAGGTTCGCGCGAT CAAGTGTACCTGGGAAGGCTACGACTGGAGGTTCGCGCGAT Direct Loss 0.965704602007582 0 NA NA prediction 0.931409204015163 Functional Loss - KLF5 ENSG00000102554 CDS Human protein_coding chr13:73649879 chr13:73649879 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_1787 0 0 1 0 1 KLF5 chr13:73649846 3'AG 73649846 Downstream 34bp 1762 chr2 101619185 101619185 1 + G T TGCT 101619185 + 101619165 101619205 41 TGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAAAAGGGCCGT TGGCTCCCGCAAAGAAGGGTTGCGAGAAGAAAAAGGGCCGT Direct Loss 0.965666581762901 0 NA NA prediction 0.931333163525803 Functional Loss - RPL31 ENSG00000071082 CDS Human protein_coding chr2:101619185 chr2:101619185 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1788 0 0 1 0 1 RPL31 chr2:101619164 3'AG 101619164 Downstream 22bp 1763 chr19 54139854 54139854 1 + G T SKCM 54139854 + 54139834 54139874 41 TCTCTCTTCCCTTCAGGTCTGGTTCAAGAATCACAGAGCAA TCTCTCTTCCCTTCAGGTCTTGTTCAAGAATCACAGAGCAA Direct Loss 0.965647866372327 0 NA NA prediction 0.931295732744654 Functional Loss - DPRX ENSG00000204595 CDS Human protein_coding chr19:54139854 chr19:54139854 nonsynonymous SNV 0.964 2 21 hm7G_associated_SNPs_1790 0 0 0 0 1 DPRX chr19:54139850 3'AG 54139850 Downstream 5bp 1764 chr20 31427576 31427576 1 + G A rs374092179 31427576 + 31427556 31427596 41 TCTCAACACAGAGAACCGCTGCGGCTCCTAAGGCTGGCCCT TCTCAACACAGAGAACCGCTACGGCTCCTAAGGCTGGCCCT Direct Loss 0.965615620436315 0 NA NA prediction 0.93123124087263 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31427576 chr20:31427576 nonsynonymous SNV 0.787 0 21 hm7G_associated_SNPs_1791 0 0 1 0 2 MAPRE1 chr20:31427541 3'AG 31427541 Downstream 36bp 1765 chr20 31427576 31427576 1 + G A rs374092179 31427576 + 31427556 31427596 41 TCTCAACACAGAGAACCGCTGCGGCTCCTAAGGCTGGCCCT TCTCAACACAGAGAACCGCTACGGCTCCTAAGGCTGGCCCT Direct Loss 0.965615620436315 0 NA NA prediction 0.93123124087263 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31427576 chr20:31427576 nonsynonymous SNV 0.787 0 21 hm7G_associated_SNPs_1791 0 0 1 0 2 MAPRE1 chr20:31427662 5'GT 31427662 Upstream 87bp 1766 chr22 21138315 21138315 1 + G A BLCA 21138315 + 21138295 21138335 41 CACAACCACAACTTCCGGCTGAATGAGAGAGAGGTAGTTAA CACAACCACAACTTCCGGCTAAATGAGAGAGAGGTAGTTAA Direct Loss 0.96557745618831 0 NA NA prediction 0.931154912376621 Functional Loss - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21138315 chr22:21138315 synonymous SNV . 0 21 hm7G_associated_SNPs_1795 0 0 1 0 1 SERPIND1 chr22:21138260 3'AG 21138260 Downstream 56bp 1767 chr12 12788786 12788786 1 + G T KIRC 12788786 + 12788766 12788806 41 TTGACTTGAAAGCAAAACTTGAGAGGAGCCGGCAGAGTGCA TTGACTTGAAAGCAAAACTTTAGAGGAGCCGGCAGAGTGCA Direct Loss 0.965527991402934 0 NA NA prediction 0.931055982805867 Functional Loss - CREBL2 ENSG00000111269 CDS Human protein_coding chr12:12788786 chr12:12788786 stopgain 0.999 1 21 hm7G_associated_SNPs_1796 0 0 1 0 1 CREBL2 chr12:12788711 3'AG 12788711 Downstream 76bp 1768 chr1 28863285 28863285 1 + G A THCA 28863285 + 28863265 28863305 41 CATACAGCCTGGGCCGGGCTGAGTATGGGCGGCTGGGCCTT CATACAGCCTGGGCCGGGCTAAGTATGGGCGGCTGGGCCTT Direct Loss 0.965509220258582 0 NA NA prediction 0.931018440517165 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28863285 chr1:28863285 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1797 0 0 1 0 1 RCC1 chr1:28863259 3'AG 28863259 Downstream 27bp 1769 chr2 108999960 108999960 1 + G A SKCM 108999960 + 108999940 108999980 41 TATCTCTTCTATGAGGACATGAAGAAGGTGAGCACAGTGCC TATCTCTTCTATGAGGACATAAAGAAGGTGAGCACAGTGCC Direct Loss 0.965500241220728 0 NA NA prediction 0.931000482441457 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108999960 chr2:108999960 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_1798 0 0 1 1 1 SULT1C4 chr2:108999966 5'GT 108999966 Upstream 7bp 1770 chr11 134131010 134131010 1 + G C LUAD 134131010 + 134130990 134131030 41 TCCCTGTGGCCAACAGAATTGGGAGCGAGGGGCAGGGCTTC TCCCTGTGGCCAACAGAATTCGGAGCGAGGGGCAGGGCTTC Direct Loss 0.965479478014166 0 NA NA prediction 0.930958956028332 Functional Loss - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131010 chr11:134131010 nonsynonymous SNV 0.955 5 21 hm7G_associated_SNPs_1799 0 0 1 1 1 ACAD8 chr11:134130938 3'AG 134130938 Downstream 73bp 1771 chr12 64199137 64199137 1 + G C LUSC 64199137 + 64199117 64199157 41 CAGGCACTAATGAACATTTTGAAAAAAGATGGGAACGATAA CAGGCACTAATGAACATTTTCAAAAAAGATGGGAACGATAA Direct Loss 0.965470475976236 0 NA NA prediction 0.930940951952472 Functional Loss - TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64199137 chr12:64199137 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1800 0 0 1 0 1 TMEM5 chr12:64199184 5'GT 64199184 Upstream 48bp 1772 chr9 135933286 135933286 1 + G A LUAD 135933286 + 135933266 135933306 41 GACGAGGAGGATGAGGAGGAGGAGGAAGAGGAGGAGGAGGA GACGAGGAGGATGAGGAGGAAGAGGAAGAGGAGGAGGAGGA Direct Loss 0.965436029407253 0 NA NA prediction 0.930872058814507 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135933286 chr9:135933286 synonymous SNV . 0 21 hm7G_associated_SNPs_1801 0 0 1 0 1 GTF3C5 chr9:135933201 3'AG 135933201 Downstream 86bp 1773 chr12 49691238 49691238 1 + G T LUSC 49691238 + 49691218 49691258 41 GCGCGGCTCGAGGAGGAGCTGCGACAGCTAAAAGAGGAGAT GCGCGGCTCGAGGAGGAGCTTCGACAGCTAAAAGAGGAGAT Direct Loss 0.965420183183328 0 NA NA prediction 0.930840366366656 Functional Loss - PRPH ENSG00000135406 CDS Human protein_coding chr12:49691238 chr12:49691238 synonymous SNV . 0 21 hm7G_associated_SNPs_1803 0 0 0 0 1 PRPH chr12:49691140 3'AG 49691140 Downstream 99bp 1774 chr7 56122166 56122166 1 + G A SARC 56122166 + 56122146 56122186 41 GTCCTAATCATTGGAGAGCTGCTGAAACAGGCGGATCTCTA GTCCTAATCATTGGAGAGCTACTGAAACAGGCGGATCTCTA Direct Loss 0.965395252697821 0 NA NA prediction 0.930790505395643 Functional Loss - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56122166 chr7:56122166 synonymous SNV . 0 21 hm7G_associated_SNPs_1805 0 0 1 0 1 CCT6A chr7:56122196 5'GT 56122196 Upstream 31bp 1775 chr17 38416822 38416822 1 + G T LUAD 38416822 + 38416802 38416842 41 CCCAAGCTGAGTAGAGATGAGCAGCGGGGTCGAGGCGCCCT CCCAAGCTGAGTAGAGATGATCAGCGGGGTCGAGGCGCCCT Direct Loss 0.96535991106041 0 NA NA prediction 0.93071982212082 Functional Loss - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38416822 chr17:38416822 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1807 0 0 1 0 2 WIPF2 chr17:38416787 3'AG 38416787 Downstream 36bp 1776 chr17 38416822 38416822 1 + G T LUAD 38416822 + 38416802 38416842 41 CCCAAGCTGAGTAGAGATGAGCAGCGGGGTCGAGGCGCCCT CCCAAGCTGAGTAGAGATGATCAGCGGGGTCGAGGCGCCCT Direct Loss 0.96535991106041 0 NA NA prediction 0.93071982212082 Functional Loss - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38416822 chr17:38416822 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1807 0 0 1 0 2 WIPF2 chr17:38416879 5'GT 38416879 Upstream 58bp 1777 chr10 23408303 23408303 1 + G C BLCA 23408303 + 23408283 23408323 41 CTCATGGTACGTCTGGCTCTGATGAAAGCCACACAGGGATC CTCATGGTACGTCTGGCTCTCATGAAAGCCACACAGGGATC Direct Loss 0.965355606670078 0 NA NA prediction 0.930711213340156 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23408303 chr10:23408303 nonsynonymous SNV 0.977 4 21 hm7G_associated_SNPs_1808 0 0 1 0 2 MSRB2 chr10:23408233 3'AG 23408233 Downstream 71bp 1778 chr10 23408303 23408303 1 + G C BLCA 23408303 + 23408283 23408323 41 CTCATGGTACGTCTGGCTCTGATGAAAGCCACACAGGGATC CTCATGGTACGTCTGGCTCTCATGAAAGCCACACAGGGATC Direct Loss 0.965355606670078 0 NA NA prediction 0.930711213340156 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23408303 chr10:23408303 nonsynonymous SNV 0.977 4 21 hm7G_associated_SNPs_1808 0 0 1 0 2 MSRB2 chr10:23408380 5'GT 23408380 Upstream 78bp 1779 chr20 31607556 31607556 1 + G T LUSC 31607556 + 31607536 31607576 41 TCCCTCTTCTCCCTGGATGTGGTGAGTGCGGTGGGGCTGGT TCCCTCTTCTCCCTGGATGTTGTGAGTGCGGTGGGGCTGGT Direct Loss 0.965339898200266 0 NA NA prediction 0.930679796400532 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31607556 chr20:31607556 synonymous SNV . 0 21 hm7G_associated_SNPs_1809 0 0 1 0 1 BPIFB2 chr20:31607556 5'GT 31607556 Upstream 1bp 1780 chr17 4910771 4910771 1 + G A UCEC 4910771 + 4910751 4910791 41 TCTGCCCACAGAGAAGCATTGCTGGCTGAGATGGGGGTGGC TCTGCCCACAGAGAAGCATTACTGGCTGAGATGGGGGTGGC Direct Loss 0.965329439741027 0 NA NA prediction 0.930658879482055 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4910771 chr17:4910771 synonymous SNV . 0 21 hm7G_associated_SNPs_1811 0 0 1 0 2 KIF1C chr17:4910762 3'AG 4910762 Downstream 10bp 1781 chr17 4910771 4910771 1 + G A UCEC 4910771 + 4910751 4910791 41 TCTGCCCACAGAGAAGCATTGCTGGCTGAGATGGGGGTGGC TCTGCCCACAGAGAAGCATTACTGGCTGAGATGGGGGTGGC Direct Loss 0.965329439741027 0 NA NA prediction 0.930658879482055 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4910771 chr17:4910771 synonymous SNV . 0 21 hm7G_associated_SNPs_1811 0 0 1 0 2 KIF1C chr17:4910837 5'GT 4910837 Upstream 67bp 1782 chr1 7837252 7837252 1 + G A SKCM 7837252 + 7837232 7837272 41 ATGCGAGTTAACGTGGACAAGGTTCTGGAAAGAGACCAGAA ATGCGAGTTAACGTGGACAAAGTTCTGGAAAGAGACCAGAA Direct Loss 0.965294834400252 0 NA NA prediction 0.930589668800505 Functional Loss - VAMP3 ENSG00000049245 CDS Human protein_coding chr1:7837252 chr1:7837252 synonymous SNV . 0 21 hm7G_associated_SNPs_1813 0 0 1 0 1 VAMP3 chr1:7837220 3'AG 7837220 Downstream 33bp 1783 chr6 167708013 167708013 1 + G A rs142311851 167708013 + 167707993 167708033 41 TTGTTCCCACAGAGCAGCCTGTACAGCGAGGAGGGCCTGGG TTGTTCCCACAGAGCAGCCTATACAGCGAGGAGGGCCTGGG Direct Loss 0.965291513760089 0 NA NA prediction 0.930583027520179 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708013 chr6:167708013 synonymous SNV . 0 21 hm7G_associated_SNPs_1814 0 0 1 0 1 UNC93A chr6:167708005 3'AG 167708005 Downstream 9bp 1784 chr16 56624758 56624758 1 + G A UCEC 56624758 + 56624738 56624778 41 CATTTTATCTGCAGGCTGCTGCTCCTGCTGCCCTGCGGAGT CATTTTATCTGCAGGCTGCTACTCCTGCTGCCCTGCGGAGT Direct Loss 0.965270948726414 0 NA NA prediction 0.930541897452828 Functional Loss - MT3 ENSG00000087250 CDS Human protein_coding chr16:56624758 chr16:56624758 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1815 0 0 0 1 1 MT3 chr16:56624752 3'AG 56624752 Downstream 7bp 1785 chr2 16085629 16085629 1 + G A KIRC 16085629 + 16085609 16085649 41 TCTCAGATGATGAAGATGATGAAGAGGAAGATGAAGAGGAA TCTCAGATGATGAAGATGATAAAGAGGAAGATGAAGAGGAA Direct Loss 0.965245241140982 0 NA NA prediction 0.930490482281963 Functional Loss - MYCN ENSG00000134323 CDS Human protein_coding chr2:16085629 chr2:16085629 nonsynonymous SNV 0.976 2 21 hm7G_associated_SNPs_1816 0 0 0 0 1 MYCN chr2:16085615 3'AG 16085615 Downstream 15bp 1786 chr11 67250680 67250680 1 + G A BLCA 67250680 + 67250660 67250700 41 GACGGGATCCAAAAACGTGTGATACAGGAAGGCCGAGGAGA GACGGGATCCAAAAACGTGTAATACAGGAAGGCCGAGGAGA Direct Loss 0.965237062681717 0 NA NA prediction 0.930474125363434 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67250680 chr11:67250680 synonymous SNV . 0 21 hm7G_associated_SNPs_1817 0 0 1 0 1 AIP chr11:67250728 5'GT 67250728 Upstream 49bp 1787 chr19 13988525 13988525 1 + G A BLCA 13988525 + 13988505 13988545 41 GCAAGAAGCTGGTCCGGCCTGACAAGGCGAAGACACAGGAC GCAAGAAGCTGGTCCGGCCTAACAAGGCGAAGACACAGGAC Direct Loss 0.965199167946476 0 NA NA prediction 0.930398335892951 Functional Loss - NANOS3 ENSG00000187556 CDS Human protein_coding chr19:13988525 chr19:13988525 nonsynonymous SNV 0.965 1 21 hm7G_associated_SNPs_1819 0 0 0 0 1 NANOS3 chr19:13988579 5'GT 13988579 Upstream 55bp 1788 chr11 2417938 2417938 1 + G T LIHC 2417938 + 2417918 2417958 41 GCTGCCATCGTGGTCGCTGTGATCATGGTGAGCGGGCGGGG GCTGCCATCGTGGTCGCTGTTATCATGGTGAGCGGGCGGGG Direct Loss 0.965189235017192 0 NA NA prediction 0.930378470034384 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417938 chr11:2417938 synonymous SNV . 0 21 hm7G_associated_SNPs_1820 0 0 1 1 2 CD81 chr11:2417858 3'AG 2417858 Downstream 81bp 1789 chr11 2417938 2417938 1 + G T LIHC 2417938 + 2417918 2417958 41 GCTGCCATCGTGGTCGCTGTGATCATGGTGAGCGGGCGGGG GCTGCCATCGTGGTCGCTGTTATCATGGTGAGCGGGCGGGG Direct Loss 0.965189235017192 0 NA NA prediction 0.930378470034384 Functional Loss - CD81 ENSG00000110651 CDS Human protein_coding chr11:2417938 chr11:2417938 synonymous SNV . 0 21 hm7G_associated_SNPs_1820 0 0 1 1 2 CD81 chr11:2417944 5'GT 2417944 Upstream 7bp 1790 chr10 135368927 135368927 1 - C G LUAD 135368927 - 135368907 135368947 41 TCCAGGCTGAAGGAAGAGCTGGAAAAGCATGGAATGCAAGT TCCAGGCTGAAGGAAGAGCTCGAAAAGCATGGAATGCAAGT Direct Loss 0.965166231150363 0 NA NA prediction 0.930332462300726 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135368927 chr10:135368927 synonymous SNV . 0 21 hm7G_associated_SNPs_1822 0 0 0 0 2 SYCE1 chr10:135368855 5'GT 135368855 Upstream 73bp 1791 chr10 135368927 135368927 1 - C G LUAD 135368927 - 135368907 135368947 41 TCCAGGCTGAAGGAAGAGCTGGAAAAGCATGGAATGCAAGT TCCAGGCTGAAGGAAGAGCTCGAAAAGCATGGAATGCAAGT Direct Loss 0.965166231150363 0 NA NA prediction 0.930332462300726 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135368927 chr10:135368927 synonymous SNV . 0 21 hm7G_associated_SNPs_1822 0 0 0 0 2 SYCE1 chr10:135368942 3'AG 135368942 Downstream 16bp 1792 chr4 52948614 52948614 1 + G A STAD 52948614 + 52948594 52948634 41 TCCTCTATCACGTGTGGCCTGCTCTCATGGAGAATGACTGT TCCTCTATCACGTGTGGCCTACTCTCATGGAGAATGACTGT Direct Loss 0.96515998952021 0 NA NA prediction 0.93031997904042 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52948614 chr4:52948614 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1823 0 0 0 0 2 SPATA18 chr4:52948553 3'AG 52948553 Downstream 62bp 1793 chr4 52948614 52948614 1 + G A STAD 52948614 + 52948594 52948634 41 TCCTCTATCACGTGTGGCCTGCTCTCATGGAGAATGACTGT TCCTCTATCACGTGTGGCCTACTCTCATGGAGAATGACTGT Direct Loss 0.96515998952021 0 NA NA prediction 0.93031997904042 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52948614 chr4:52948614 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1823 0 0 0 0 2 SPATA18 chr4:52948676 5'GT 52948676 Upstream 63bp 1794 chr17 36912175 36912175 1 + G T BLCA 36912175 + 36912155 36912195 41 CGGCTGAACCTGTATGAGTTGAAGGAAGGTCGGCAGATCAA CGGCTGAACCTGTATGAGTTTAAGGAAGGTCGGCAGATCAA Direct Loss 0.965145773216343 0 NA NA prediction 0.930291546432685 Functional Loss - PSMB3 ENSG00000108294 CDS Human other chr17:36912175 chr17:36912175 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_1825 0 0 1 0 2 PSMB3 chr17:36912136 3'AG 36912136 Downstream 40bp 1795 chr17 36912175 36912175 1 + G T BLCA 36912175 + 36912155 36912195 41 CGGCTGAACCTGTATGAGTTGAAGGAAGGTCGGCAGATCAA CGGCTGAACCTGTATGAGTTTAAGGAAGGTCGGCAGATCAA Direct Loss 0.965145773216343 0 NA NA prediction 0.930291546432685 Functional Loss - PSMB3 ENSG00000108294 CDS Human other chr17:36912175 chr17:36912175 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_1825 0 0 1 0 2 PSMB3 chr17:36912243 5'GT 36912243 Upstream 69bp 1796 chr9 133574728 133574728 1 + G T LAML 133574728 + 133574708 133574748 41 TATTTCAGAGGAGAAGATCTGCAGAAGATGAGCTTGCAATG TATTTCAGAGGAGAAGATCTTCAGAAGATGAGCTTGCAATG Direct Loss 0.965108766136791 0 NA NA prediction 0.930217532273582 Functional Loss - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133574728 chr9:133574728 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1827 0 0 1 1 1 EXOSC2 chr9:133574716 3'AG 133574716 Downstream 13bp 1797 chr4 155490739 155490739 1 + G T UCEC 155490739 + 155490719 155490759 41 ACAGAACTTTTGATAGAAATGGAGGACTGGAAAGGAGACAA ACAGAACTTTTGATAGAAATTGAGGACTGGAAAGGAGACAA Direct Loss 0.965106925747148 0 NA NA prediction 0.930213851494295 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155490739 chr4:155490739 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1828 0 0 1 0 1 FGB chr4:155490666 3'AG 155490666 Downstream 74bp 1798 chr19 57746297 57746297 1 + G A PRAD 57746297 + 57746277 57746317 41 GACTACTTGCCGCCAGAAATGATTGAGGGGAGAACATATGA GACTACTTGCCGCCAGAAATAATTGAGGGGAGAACATATGA Direct Loss 0.965066436568111 0 NA NA prediction 0.930132873136221 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57746297 chr19:57746297 nonsynonymous SNV 0.869 1 21 hm7G_associated_SNPs_1831 0 0 0 0 1 AURKC chr19:57746252 3'AG 57746252 Downstream 46bp 1799 chr4 140624680 140624680 1 + G A UCEC 140624680 + 140624660 140624700 41 TCTGGGGATATTCAGAAGCTGCTAAAAAACGGTAAGGAGAA TCTGGGGATATTCAGAAGCTACTAAAAAACGGTAAGGAGAA Direct Loss 0.964997695900258 0 NA NA prediction 0.929995391800516 Functional Loss - MGST2 ENSG00000085871 CDS Human protein_coding chr4:140624680 chr4:140624680 nonsynonymous SNV 0.992 0 21 hm7G_associated_SNPs_1834 0 0 1 7 2 MGST2 chr4:140624609 3'AG 140624609 Downstream 72bp 1800 chr4 140624680 140624680 1 + G A UCEC 140624680 + 140624660 140624700 41 TCTGGGGATATTCAGAAGCTGCTAAAAAACGGTAAGGAGAA TCTGGGGATATTCAGAAGCTACTAAAAAACGGTAAGGAGAA Direct Loss 0.964997695900258 0 NA NA prediction 0.929995391800516 Functional Loss - MGST2 ENSG00000085871 CDS Human protein_coding chr4:140624680 chr4:140624680 nonsynonymous SNV 0.992 0 21 hm7G_associated_SNPs_1834 0 0 1 7 2 MGST2 chr4:140624690 5'GT 140624690 Upstream 11bp 1801 chr19 11553282 11553282 1 + G C BLCA 11553282 + 11553262 11553302 41 GGACAGTGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCC GGACAGTGAAGGAGGAAGCTCAGAAGCCAGAGAGAGAGGCC Direct Loss 0.964978801087266 0 NA NA prediction 0.929957602174533 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553282 chr19:11553282 nonsynonymous SNV 0.906 3 21 hm7G_associated_SNPs_1835 0 0 1 0 2 PRKCSH chr19:11553201 3'AG 11553201 Downstream 82bp 1802 chr19 11553282 11553282 1 + G C BLCA 11553282 + 11553262 11553302 41 GGACAGTGAAGGAGGAAGCTGAGAAGCCAGAGAGAGAGGCC GGACAGTGAAGGAGGAAGCTCAGAAGCCAGAGAGAGAGGCC Direct Loss 0.964978801087266 0 NA NA prediction 0.929957602174533 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553282 chr19:11553282 nonsynonymous SNV 0.906 3 21 hm7G_associated_SNPs_1835 0 0 1 0 2 PRKCSH chr19:11553330 5'GT 11553330 Upstream 49bp 1803 chr4 134076121 134076121 1 + G C LUSC 134076121 + 134076101 134076141 41 GCTCTAAGGACAGTGGTCATGGAGACAGTGAACAGGGAGAT GCTCTAAGGACAGTGGTCATCGAGACAGTGAACAGGGAGAT Direct Loss 0.964943293341377 0 NA NA prediction 0.929886586682754 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134076121 chr4:134076121 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_1836 0 0 1 0 2 PCDH10 chr4:134076072 3'AG 134076072 Downstream 50bp 1804 chr4 134076121 134076121 1 + G C LUSC 134076121 + 134076101 134076141 41 GCTCTAAGGACAGTGGTCATGGAGACAGTGAACAGGGAGAT GCTCTAAGGACAGTGGTCATCGAGACAGTGAACAGGGAGAT Direct Loss 0.964943293341377 0 NA NA prediction 0.929886586682754 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134076121 chr4:134076121 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_1836 0 0 1 0 2 PCDH10 chr4:134076178 5'GT 134076178 Upstream 58bp 1805 chr11 46760630 46760630 1 + G T SARC 46760630 + 46760610 46760650 41 ATGAAGGGAAACGAGGGGATGCCTGTGAAGGTGACAGTGGG ATGAAGGGAAACGAGGGGATTCCTGTGAAGGTGACAGTGGG Direct Loss 0.964926910053031 0 NA NA prediction 0.929853820106062 Functional Loss - F2 ENSG00000180210 CDS Human protein_coding chr11:46760630 chr11:46760630 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1837 0 0 1 0 2 F2 chr11:46760598 3'AG 46760598 Downstream 33bp 1806 chr11 46760630 46760630 1 + G T SARC 46760630 + 46760610 46760650 41 ATGAAGGGAAACGAGGGGATGCCTGTGAAGGTGACAGTGGG ATGAAGGGAAACGAGGGGATTCCTGTGAAGGTGACAGTGGG Direct Loss 0.964926910053031 0 NA NA prediction 0.929853820106062 Functional Loss - F2 ENSG00000180210 CDS Human protein_coding chr11:46760630 chr11:46760630 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1837 0 0 1 0 2 F2 chr11:46760668 5'GT 46760668 Upstream 39bp 1807 chr13 77657234 77657234 1 + G A UCEC 77657234 + 77657214 77657254 41 AAGGTCTGAGATGGTCTGCAGCAAGCGGTGAAAGGTGTGTG AAGGTCTGAGATGGTCTGCAACAAGCGGTGAAAGGTGTGTG Direct Loss 0.964917815260886 0 NA NA prediction 0.929835630521773 Functional Loss - MYCBP2 ENSG00000005810 CDS Human processed_transcript chr13:77657234 chr13:77657234 synonymous SNV . 0 21 hm7G_associated_SNPs_1838 0 0 0 0 2 MYCBP2-AS1 chr13:77657145 3'AG 77657145 Downstream 90bp 1808 chr13 77657234 77657234 1 + G A UCEC 77657234 + 77657214 77657254 41 AAGGTCTGAGATGGTCTGCAGCAAGCGGTGAAAGGTGTGTG AAGGTCTGAGATGGTCTGCAACAAGCGGTGAAAGGTGTGTG Direct Loss 0.964917815260886 0 NA NA prediction 0.929835630521773 Functional Loss - MYCBP2 ENSG00000005810 CDS Human protein_coding chr13:77657234 chr13:77657234 synonymous SNV . 0 21 hm7G_associated_SNPs_1838 0 0 0 0 2 MYCBP2 chr13:77657247 5'GT 77657247 Upstream 14bp 1809 chr7 98254433 98254433 1 + G A SKCM 98254433 + 98254413 98254453 41 CAGGCCAACGAGATCGTGCTGATCGAGTGGGGCAACAACCC CAGGCCAACGAGATCGTGCTAATCGAGTGGGGCAACAACCC Direct Loss 0.964909719520406 0 NA NA prediction 0.929819439040811 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98254433 chr7:98254433 synonymous SNV . 0 21 hm7G_associated_SNPs_1839 0 0 0 0 1 NPTX2 chr7:98254478 5'GT 98254478 Upstream 46bp 1810 chr2 55462068 55462068 1 + G T UCEC 55462068 + 55462048 55462088 41 AATAAGCACAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAA AATAAGCACAAGAGAAAGAATGTTAAGCTGGCTGTCCTGAA Direct Loss 0.964861505485856 0 NA NA prediction 0.929723010971711 Functional Loss - RPS27A ENSG00000143947 CDS Human protein_coding chr2:55462068 chr2:55462068 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_1843 0 0 1 0 1 RPS27A chr2:55462098 5'GT 55462098 Upstream 31bp 1811 chr13 41639360 41639360 1 + G T COAD 41639360 + 41639340 41639380 41 AGGCATCAAAGGAGTTTGCTGCAATGGAGGCAGCTGCCCTG AGGCATCAAAGGAGTTTGCTTCAATGGAGGCAGCTGCCCTG Direct Loss 0.964852529244022 0 NA NA prediction 0.929705058488043 Functional Loss - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41639360 chr13:41639360 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1844 0 0 1 0 2 WBP4 chr13:41639300 3'AG 41639300 Downstream 61bp 1812 chr13 41639360 41639360 1 + G T COAD 41639360 + 41639340 41639380 41 AGGCATCAAAGGAGTTTGCTGCAATGGAGGCAGCTGCCCTG AGGCATCAAAGGAGTTTGCTTCAATGGAGGCAGCTGCCCTG Direct Loss 0.964852529244022 0 NA NA prediction 0.929705058488043 Functional Loss - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41639360 chr13:41639360 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1844 0 0 1 0 2 WBP4 chr13:41639423 5'GT 41639423 Upstream 64bp 1813 chr17 27381679 27381679 1 + G A CESC 27381679 + 27381659 27381699 41 CCCCACCACATCTACGGACTGCCCACAGGAGAGTACCCAGG CCCCACCACATCTACGGACTACCCACAGGAGAGTACCCAGG Direct Loss 0.964844198804957 0 NA NA prediction 0.929688397609914 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27381679 chr17:27381679 synonymous SNV . 0 21 hm7G_associated_SNPs_1845 0 0 1 0 1 PIPOX chr17:27381709 5'GT 27381709 Upstream 31bp 1814 chr16 28506059 28506059 1 + G A OV 28506059 + 28506039 28506079 41 CAGGCCTTGAGGGGGGCACTGGTGAGAAGGGCAGACAGCTG CAGGCCTTGAGGGGGGCACTAGTGAGAAGGGCAGACAGCTG Direct Loss 0.964813789798885 0 NA NA prediction 0.92962757959777 Functional Loss - APOBR ENSG00000184730 CDS Human protein_coding chr16:28506059 chr16:28506059 synonymous SNV . 0 21 hm7G_associated_SNPs_1847 0 0 0 0 1 APOBR chr16:28506059 5'GT 28506059 Upstream 1bp 1815 chr3 141499269 141499269 1 + G A rs147462832 141499269 + 141499249 141499289 41 ATGTATGCCTGTAAGAAACTGGACAAGAAGCGGCTGAAGAA ATGTATGCCTGTAAGAAACTAGACAAGAAGCGGCTGAAGAA Direct Loss 0.964810176191769 0 NA NA prediction 0.929620352383539 Functional Loss - GRK7 ENSG00000114124 CDS Human protein_coding chr3:141499269 chr3:141499269 synonymous SNV . 0 21 hm7G_associated_SNPs_1848 0 0 0 0 1 GRK7 chr3:141499216 3'AG 141499216 Downstream 54bp 1816 chr1 64034059 64034059 1 + G A rs74078273 64034059 + 64034039 64034079 41 TCCATATGGAGGCATGTAGTGGACAACTTGAGAAGGCCATT TCCATATGGAGGCATGTAGTAGACAACTTGAGAAGGCCATT Direct Loss 0.964769558563086 0 NA NA prediction 0.929539117126173 Functional Loss - EFCAB7 ENSG00000203965 CDS Human protein_coding chr1:64034059 chr1:64034059 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_1849 0 0 0 0 1 EFCAB7 chr1:64033981 3'AG 64033981 Downstream 79bp 1817 chr8 41387758 41387758 1 + G A LUAD 41387758 + 41387738 41387778 41 ATTTCCTGGGACAGGACTCTGATGGGGGTAGTGAGGAAGTG ATTTCCTGGGACAGGACTCTAATGGGGGTAGTGAGGAAGTG Direct Loss 0.964752819200257 0 NA NA prediction 0.929505638400514 Functional Loss - GINS4 ENSG00000147536 CDS Human protein_coding chr8:41387758 chr8:41387758 nonsynonymous SNV 0.925 0 21 hm7G_associated_SNPs_1851 0 0 1 0 2 GINS4 chr8:41387703 3'AG 41387703 Downstream 56bp 1818 chr8 41387758 41387758 1 + G A LUAD 41387758 + 41387738 41387778 41 ATTTCCTGGGACAGGACTCTGATGGGGGTAGTGAGGAAGTG ATTTCCTGGGACAGGACTCTAATGGGGGTAGTGAGGAAGTG Direct Loss 0.964752819200257 0 NA NA prediction 0.929505638400514 Functional Loss - GINS4 ENSG00000147536 CDS Human protein_coding chr8:41387758 chr8:41387758 nonsynonymous SNV 0.925 0 21 hm7G_associated_SNPs_1851 0 0 1 0 2 GINS4 chr8:41387817 5'GT 41387817 Upstream 60bp 1819 chr1 32658299 32658299 1 + G A BLCA 32658299 + 32658279 32658319 41 TCCCAGAGGATGTGTGAGCTGATGAAGCAGCAAGAGACCCA TCCCAGAGGATGTGTGAGCTAATGAAGCAGCAAGAGACCCA Direct Loss 0.964749766625189 0 NA NA prediction 0.929499533250377 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32658299 chr1:32658299 synonymous SNV . 0 21 hm7G_associated_SNPs_1853 0 0 1 0 2 TXLNA chr1:32658258 3'AG 32658258 Downstream 42bp 1820 chr1 32658299 32658299 1 + G A BLCA 32658299 + 32658279 32658319 41 TCCCAGAGGATGTGTGAGCTGATGAAGCAGCAAGAGACCCA TCCCAGAGGATGTGTGAGCTAATGAAGCAGCAAGAGACCCA Direct Loss 0.964749766625189 0 NA NA prediction 0.929499533250377 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32658299 chr1:32658299 synonymous SNV . 0 21 hm7G_associated_SNPs_1853 0 0 1 0 2 TXLNA chr1:32658332 5'GT 32658332 Upstream 34bp 1821 chr17 26449651 26449651 1 + G T CESC 26449651 + 26449631 26449671 41 CAGTAACAGATCCAAGAGATGGAAAGAGAGTAGCGCTCAAA CAGTAACAGATCCAAGAGATTGAAAGAGAGTAGCGCTCAAA Direct Loss 0.964734878364962 0 NA NA prediction 0.929469756729923 Functional Loss - NLK ENSG00000087095 CDS Human protein_coding chr17:26449651 chr17:26449651 stopgain 1.000 1 21 hm7G_associated_SNPs_1855 0 0 1 0 1 NLK chr17:26449629 3'AG 26449629 Downstream 23bp 1822 chr3 186299790 186299790 1 + G C STAD 186299790 + 186299770 186299810 41 TCTCTTTACCTCAGACTAGTGAATGAAGAACGAACGCTGGA TCTCTTTACCTCAGACTAGTCAATGAAGAACGAACGCTGGA Direct Loss 0.964719090661956 0 NA NA prediction 0.929438181323912 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186299790 chr3:186299790 synonymous SNV . 0 21 hm7G_associated_SNPs_1856 0 0 1 0 2 DNAJB11 chr3:186299784 3'AG 186299784 Downstream 7bp 1823 chr3 186299790 186299790 1 + G C STAD 186299790 + 186299770 186299810 41 TCTCTTTACCTCAGACTAGTGAATGAAGAACGAACGCTGGA TCTCTTTACCTCAGACTAGTCAATGAAGAACGAACGCTGGA Direct Loss 0.964719090661956 0 NA NA prediction 0.929438181323912 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186299790 chr3:186299790 synonymous SNV . 0 21 hm7G_associated_SNPs_1856 0 0 1 0 2 DNAJB11 chr3:186299866 5'GT 186299866 Upstream 77bp 1824 chr12 6575088 6575088 1 - C T BLCA 6575088 - 6575068 6575108 41 CAGAGCTGGATGACCGAGCTGATGCCTTGCAGGCAGGAGCA CAGAGCTGGATGACCGAGCTAATGCCTTGCAGGCAGGAGCA Direct Loss 0.964709901113514 0 NA NA prediction 0.929419802227028 Functional Loss - VAMP1 ENSG00000139190 CDS Human protein_coding chr12:6575088 chr12:6575088 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_1857 0 0 1 0 2 VAMP1 chr12:6575008 5'GT 6575008 Upstream 81bp 1825 chr12 6575088 6575088 1 - C T BLCA 6575088 - 6575068 6575108 41 CAGAGCTGGATGACCGAGCTGATGCCTTGCAGGCAGGAGCA CAGAGCTGGATGACCGAGCTAATGCCTTGCAGGCAGGAGCA Direct Loss 0.964709901113514 0 NA NA prediction 0.929419802227028 Functional Loss - VAMP1 ENSG00000139190 CDS Human protein_coding chr12:6575088 chr12:6575088 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_1857 0 0 1 0 2 VAMP1 chr12:6575166 3'AG 6575166 Downstream 79bp 1826 chr1 1848599 1848599 1 + G A SKCM 1848599 + 1848579 1848619 41 TTCCCAGAGTTTGTGGCCATGATGACGGGGGAGTCCTTCAA TTCCCAGAGTTTGTGGCCATAATGACGGGGGAGTCCTTCAA Direct Loss 0.964702368593409 0 NA NA prediction 0.929404737186817 Functional Loss - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848599 chr1:1848599 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1858 0 0 0 0 1 CALML6 chr1:1848513 3'AG 1848513 Downstream 87bp 1827 chr11 18472599 18472599 1 + G A LUAD 18472599 + 18472579 18472619 41 GATGTTGTGAAAATTAACTTGAATTCTGAGGAGGAGGCCCT GATGTTGTGAAAATTAACTTAAATTCTGAGGAGGAGGCCCT Direct Loss 0.964690652881915 0 NA NA prediction 0.92938130576383 Functional Loss - LDHC ENSG00000166796 CDS Human protein_coding chr11:18472599 chr11:18472599 synonymous SNV . 0 21 hm7G_associated_SNPs_1859 0 0 0 3 1 LDHC chr11:18472510 3'AG 18472510 Downstream 90bp 1828 chr10 81904026 81904026 1 + G C KIRC 81904026 + 81904006 81904046 41 GGGACAGAGGTGAAAGGCCTGCTGGGCCTGCTGGAGGAGCT GGGACAGAGGTGAAAGGCCTCCTGGGCCTGCTGGAGGAGCT Direct Loss 0.964669197788763 0 NA NA prediction 0.929338395577526 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904026 chr10:81904026 synonymous SNV . 0 21 hm7G_associated_SNPs_1860 0 0 0 0 2 PLAC9 chr10:81903979 3'AG 81903979 Downstream 48bp 1829 chr10 81904026 81904026 1 + G C KIRC 81904026 + 81904006 81904046 41 GGGACAGAGGTGAAAGGCCTGCTGGGCCTGCTGGAGGAGCT GGGACAGAGGTGAAAGGCCTCCTGGGCCTGCTGGAGGAGCT Direct Loss 0.964669197788763 0 NA NA prediction 0.929338395577526 Functional Loss - PLAC9 ENSG00000189129 CDS Human protein_coding chr10:81904026 chr10:81904026 synonymous SNV . 0 21 hm7G_associated_SNPs_1860 0 0 0 0 2 PLAC9 chr10:81904099 5'GT 81904099 Upstream 74bp 1830 chr8 20074782 20074782 1 + G T LIHC 20074782 + 20074762 20074802 41 TATCACGGTTAATGAAGTCTGCTATTGGAGAAGGGATGACC TATCACGGTTAATGAAGTCTTCTATTGGAGAAGGGATGACC Direct Loss 0.964659201631572 0 NA NA prediction 0.929318403263145 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20074782 chr8:20074782 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1861 0 0 1 0 2 ATP6V1B2 chr8:20074731 3'AG 20074731 Downstream 52bp 1831 chr8 20074782 20074782 1 + G T LIHC 20074782 + 20074762 20074802 41 TATCACGGTTAATGAAGTCTGCTATTGGAGAAGGGATGACC TATCACGGTTAATGAAGTCTTCTATTGGAGAAGGGATGACC Direct Loss 0.964659201631572 0 NA NA prediction 0.929318403263145 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20074782 chr8:20074782 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1861 0 0 1 0 2 ATP6V1B2 chr8:20074835 5'GT 20074835 Upstream 54bp 1832 chr11 75507433 75507433 1 + G A LAML 75507433 + 75507413 75507453 41 TCTTTGGATACCACCCCCATGGTATCATGGGCCTGGGTGCC TCTTTGGATACCACCCCCATAGTATCATGGGCCTGGGTGCC Direct Loss 0.96457315088505 0 NA NA prediction 0.929146301770101 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75507433 chr11:75507433 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1865 0 0 0 0 1 DGAT2 chr11:75507373 3'AG 75507373 Downstream 61bp 1833 chr8 42919285 42919285 1 + G C LUAD 42919285 + 42919265 42919305 41 TCCGAGCTGTCCTGCAGCGTGATGAAAGAAGTGAACGAGCT TCCGAGCTGTCCTGCAGCGTCATGAAAGAAGTGAACGAGCT Direct Loss 0.964562342685457 0 NA NA prediction 0.929124685370915 Functional Loss - FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42919285 chr8:42919285 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_1867 0 0 1 0 2 FNTA chr8:42919244 3'AG 42919244 Downstream 42bp 1834 chr8 42919285 42919285 1 + G C LUAD 42919285 + 42919265 42919305 41 TCCGAGCTGTCCTGCAGCGTGATGAAAGAAGTGAACGAGCT TCCGAGCTGTCCTGCAGCGTCATGAAAGAAGTGAACGAGCT Direct Loss 0.964562342685457 0 NA NA prediction 0.929124685370915 Functional Loss - FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42919285 chr8:42919285 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_1867 0 0 1 0 2 FNTA chr8:42919358 5'GT 42919358 Upstream 74bp 1835 chr14 75936049 75936049 1 + G A rs145604845 75936049 + 75936029 75936069 41 AAGACCCAGATTGAGGAGCTGAAGCAGGAGCGGCAGCAGCT AAGACCCAGATTGAGGAGCTAAAGCAGGAGCGGCAGCAGCT Direct Loss 0.964558742780021 0 NA NA prediction 0.929117485560042 Functional Loss - JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936049 chr14:75936049 synonymous SNV . 0 21 hm7G_associated_SNPs_1868 0 0 0 0 1 JDP2 chr14:75935993 3'AG 75935993 Downstream 57bp 1836 chr19 4352926 4352926 1 + G A LGG 4352926 + 4352906 4352946 41 GAAGGGGAGGAGGAGGAGTTGCTGATGGAAGAGGAGGAGGA GAAGGGGAGGAGGAGGAGTTACTGATGGAAGAGGAGGAGGA Direct Loss 0.964545032807777 0 NA NA prediction 0.929090065615554 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4352926 chr19:4352926 synonymous SNV . 0 21 hm7G_associated_SNPs_1869 0 0 0 0 1 MPND chr19:4352894 3'AG 4352894 Downstream 33bp 1837 chr10 103354462 103354462 1 + G C LUSC 103354462 + 103354442 103354482 41 CAGACGGCAAGGAAATGGCTGAAGAATATGACGAGAAGACG CAGACGGCAAGGAAATGGCTCAAGAATATGACGAGAAGACG Direct Loss 0.964544284989232 0 NA NA prediction 0.929088569978464 Functional Loss - DPCD ENSG00000166171 CDS Human protein_coding chr10:103354462 chr10:103354462 nonsynonymous SNV 0.984 4 21 hm7G_associated_SNPs_1871 0 0 1 0 2 DPCD chr10:103354415 3'AG 103354415 Downstream 48bp 1838 chr10 103354462 103354462 1 + G C LUSC 103354462 + 103354442 103354482 41 CAGACGGCAAGGAAATGGCTGAAGAATATGACGAGAAGACG CAGACGGCAAGGAAATGGCTCAAGAATATGACGAGAAGACG Direct Loss 0.964544284989232 0 NA NA prediction 0.929088569978464 Functional Loss - DPCD ENSG00000166171 CDS Human protein_coding chr10:103354462 chr10:103354462 nonsynonymous SNV 0.984 4 21 hm7G_associated_SNPs_1871 0 0 1 0 2 DPCD chr10:103354495 5'GT 103354495 Upstream 34bp 1839 chr10 82348405 82348405 1 + G T UCEC 82348405 + 82348385 82348425 41 GAGGAAAGAGGAAGAGGAGAGGAAGCGAGGAGAAGAGCAGA GAGGAAAGAGGAAGAGGAGATGAAGCGAGGAGAAGAGCAGA Direct Loss 0.964531777878732 0 NA NA prediction 0.929063555757465 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82348405 chr10:82348405 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_1872 0 0 0 0 1 SH2D4B chr10:82348386 3'AG 82348386 Downstream 20bp 1840 chr4 164436521 164436521 1 + G T UCEC 164436521 + 164436501 164436541 41 TGAGTTACATAACAGTATCAGGGACAGGCAGGGGAGGCGGC TGAGTTACATAACAGTATCATGGACAGGCAGGGGAGGCGGC Direct Loss 0.964457215591863 0 NA NA prediction 0.928914431183727 Functional Loss - TMA16 ENSG00000198498 CDS Human protein_coding chr4:164436521 chr4:164436521 nonsynonymous SNV 0.959 2 21 hm7G_associated_SNPs_1873 0 0 1 0 2 TMA16 chr4:164436465 3'AG 164436465 Downstream 57bp 1841 chr4 164436521 164436521 1 + G T UCEC 164436521 + 164436501 164436541 41 TGAGTTACATAACAGTATCAGGGACAGGCAGGGGAGGCGGC TGAGTTACATAACAGTATCATGGACAGGCAGGGGAGGCGGC Direct Loss 0.964457215591863 0 NA NA prediction 0.928914431183727 Functional Loss - TMA16 ENSG00000198498 CDS Human protein_coding chr4:164436521 chr4:164436521 nonsynonymous SNV 0.959 2 21 hm7G_associated_SNPs_1873 0 0 1 0 2 TMA16 chr4:164436613 5'GT 164436613 Upstream 93bp 1842 chr4 166218794 166218794 1 + G T STAD 166218794 + 166218774 166218814 41 TAATAGCATGGGTGAACCATGACAAGGATGTGAGGCAAGAG TAATAGCATGGGTGAACCATTACAAGGATGTGAGGCAAGAG Direct Loss 0.964451233970518 0 NA NA prediction 0.928902467941036 Functional Loss - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166218794 chr4:166218794 nonsynonymous SNV 0.980 4 21 hm7G_associated_SNPs_1874 0 0 1 0 2 KLHL2 chr4:166218761 3'AG 166218761 Downstream 34bp 1843 chr4 166218794 166218794 1 + G T STAD 166218794 + 166218774 166218814 41 TAATAGCATGGGTGAACCATGACAAGGATGTGAGGCAAGAG TAATAGCATGGGTGAACCATTACAAGGATGTGAGGCAAGAG Direct Loss 0.964451233970518 0 NA NA prediction 0.928902467941036 Functional Loss - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166218794 chr4:166218794 nonsynonymous SNV 0.980 4 21 hm7G_associated_SNPs_1874 0 0 1 0 2 KLHL2 chr4:166218877 5'GT 166218877 Upstream 84bp 1844 chr7 7622753 7622753 1 + G C LUAD 7622753 + 7622733 7622773 41 TGTTTTCTGTTTTTAGGAATGGTGGAAAGCAGCAGACATAA TGTTTTCTGTTTTTAGGAATCGTGGAAAGCAGCAGACATAA Direct Loss 0.964447177758265 0 NA NA prediction 0.92889435551653 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7622753 chr7:7622753 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1875 0 0 1 0 1 MIOS chr7:7622749 3'AG 7622749 Downstream 5bp 1845 chr20 44637694 44637694 1 + G C LUAD 44637694 + 44637674 44637714 41 ACCAATCTCACCGACAGGCAGCTGGCAGAGGTGGGCAAACA ACCAATCTCACCGACAGGCACCTGGCAGAGGTGGGCAAACA Direct Loss 0.964334849547036 0 NA NA prediction 0.928669699094071 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44637694 chr20:44637694 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_1880 0 0 0 0 1 MMP9 chr20:44637703 5'GT 44637703 Upstream 10bp 1846 chr13 53250409 53250409 1 + G A rs74088624 53250409 + 53250389 53250429 41 GAGGCTGTGAGATGGGAAAAGCTAGAGGGGCAAGGAGATGT GAGGCTGTGAGATGGGAAAAACTAGAGGGGCAAGGAGATGT Direct Loss 0.964329639352733 0 NA NA prediction 0.928659278705465 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53250409 chr13:53250409 synonymous SNV . 0 21 hm7G_associated_SNPs_1881 0 0 1 0 2 SUGT1 chr13:53250365 3'AG 53250365 Downstream 45bp 1847 chr13 53250409 53250409 1 + G A rs74088624 53250409 + 53250389 53250429 41 GAGGCTGTGAGATGGGAAAAGCTAGAGGGGCAAGGAGATGT GAGGCTGTGAGATGGGAAAAACTAGAGGGGCAAGGAGATGT Direct Loss 0.964329639352733 0 NA NA prediction 0.928659278705465 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53250409 chr13:53250409 synonymous SNV . 0 21 hm7G_associated_SNPs_1881 0 0 1 0 2 SUGT1 chr13:53250455 5'GT 53250455 Upstream 47bp 1848 chr12 7947082 7947082 1 + G A SKCM 7947082 + 7947062 7947102 41 TGGTTCCAGAACCAGAGAATGAAATCTAAGAGGTGGCAGAA TGGTTCCAGAACCAGAGAATAAAATCTAAGAGGTGGCAGAA Direct Loss 0.964307742092145 0 NA NA prediction 0.92861548418429 Functional Loss - NANOG ENSG00000111704 CDS Human protein_coding chr12:7947082 chr12:7947082 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_1885 0 0 0 0 2 NANOG chr12:7947053 3'AG 7947053 Downstream 30bp 1849 chr12 7947082 7947082 1 + G A SKCM 7947082 + 7947062 7947102 41 TGGTTCCAGAACCAGAGAATGAAATCTAAGAGGTGGCAGAA TGGTTCCAGAACCAGAGAATAAAATCTAAGAGGTGGCAGAA Direct Loss 0.964307742092145 0 NA NA prediction 0.92861548418429 Functional Loss - NANOG ENSG00000111704 CDS Human protein_coding chr12:7947082 chr12:7947082 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_1885 0 0 0 0 2 NANOG chr12:7947139 5'GT 7947139 Upstream 58bp 1850 chr3 193854818 193854818 1 + G A OV 193854818 + 193854798 193854838 41 GTGAAGCACCTCCGGAACCTGCAGCGGGCGCAGATGACGGG GTGAAGCACCTCCGGAACCTACAGCGGGCGCAGATGACGGG Direct Loss 0.964244632160675 0 NA NA prediction 0.928489264321351 Functional Loss - HES1 ENSG00000114315 CDS Human protein_coding chr3:193854818 chr3:193854818 synonymous SNV . 0 21 hm7G_associated_SNPs_1888 0 0 1 0 2 HES1 chr3:193854750 3'AG 193854750 Downstream 69bp 1851 chr3 193854818 193854818 1 + G A OV 193854818 + 193854798 193854838 41 GTGAAGCACCTCCGGAACCTGCAGCGGGCGCAGATGACGGG GTGAAGCACCTCCGGAACCTACAGCGGGCGCAGATGACGGG Direct Loss 0.964244632160675 0 NA NA prediction 0.928489264321351 Functional Loss - HES1 ENSG00000114315 CDS Human protein_coding chr3:193854818 chr3:193854818 synonymous SNV . 0 21 hm7G_associated_SNPs_1888 0 0 1 0 2 HES1 chr3:193854837 5'GT 193854837 Upstream 20bp 1852 chr16 67042970 67042970 1 + G T SARC 67042970 + 67042950 67042990 41 ACCACAAGAGTGGGCATGAAGCTCAAGGAGAAGAAGATGGC ACCACAAGAGTGGGCATGAATCTCAAGGAGAAGAAGATGGC Direct Loss 0.964231660525754 0 NA NA prediction 0.928463321051509 Functional Loss - CES4A ENSG00000172824 CDS Human protein_coding chr16:67042970 chr16:67042970 nonsynonymous SNV 0.686 1 21 hm7G_associated_SNPs_1889 0 0 0 0 1 CES4A chr16:67042877 3'AG 67042877 Downstream 94bp 1853 chr19 39978750 39978750 1 + G T LUAD 39978750 + 39978730 39978770 41 TCGAGTAGTAGTTGTGGACTGCAAGAAGGAAGCCTTCCGCC TCGAGTAGTAGTTGTGGACTTCAAGAAGGAAGCCTTCCGCC Direct Loss 0.964061882962576 0 NA NA prediction 0.928123765925152 Functional Loss - TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39978750 chr19:39978750 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_1890 0 0 1 0 1 TIMM50 chr19:39978701 3'AG 39978701 Downstream 50bp 1854 chr9 131115780 131115780 1 + G T LUAD 131115780 + 131115760 131115800 41 AACGAGGACACCATGGAGCTGATCCGGGGGCCCGACGGCGT AACGAGGACACCATGGAGCTTATCCGGGGGCCCGACGGCGT Direct Loss 0.964024119252164 0 NA NA prediction 0.928048238504328 Functional Loss - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131115780 chr9:131115780 synonymous SNV . 0 21 hm7G_associated_SNPs_1892 0 0 1 0 2 SLC27A4 chr9:131115694 3'AG 131115694 Downstream 87bp 1855 chr9 131115780 131115780 1 + G T LUAD 131115780 + 131115760 131115800 41 AACGAGGACACCATGGAGCTGATCCGGGGGCCCGACGGCGT AACGAGGACACCATGGAGCTTATCCGGGGGCCCGACGGCGT Direct Loss 0.964024119252164 0 NA NA prediction 0.928048238504328 Functional Loss - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131115780 chr9:131115780 synonymous SNV . 0 21 hm7G_associated_SNPs_1892 0 0 1 0 2 SLC27A4 chr9:131115820 5'GT 131115820 Upstream 41bp 1856 chr15 41059498 41059498 1 + G T STAD 41059498 + 41059478 41059518 41 CAGGGGCTTCCGTGTGCTGAGCATGACGGGGGTGGGCCAGA CAGGGGCTTCCGTGTGCTGATCATGACGGGGGTGGGCCAGA Direct Loss 0.964013675442471 0 NA NA prediction 0.928027350884941 Functional Loss - GCHFR ENSG00000137880 CDS Human protein_coding chr15:41059498 chr15:41059498 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_1893 0 0 1 0 1 GCHFR chr15:41059424 3'AG 41059424 Downstream 75bp 1857 chr6 71298350 71298350 1 + G C BLCA 71298350 + 71298330 71298370 41 ATGTTAATCCAGTGACCAAAGAAAAAGGTGGACCCAGGGGC ATGTTAATCCAGTGACCAAACAAAAAGGTGGACCCAGGGGC Direct Loss 0.96398919852553 0 NA NA prediction 0.927978397051059 Functional Loss - SDHAF4 ENSG00000154079 CDS Human protein_coding chr6:71298350 chr6:71298350 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1894 0 0 1 0 1 SDHAF4 chr6:71298318 3'AG 71298318 Downstream 33bp 1858 chr1 46976927 46976927 1 + G T BRCA 46976927 + 46976907 46976947 41 GGGGCTGACAGCAAGGGGCTGGGCTGCAAGAGGGGCAGCCC GGGGCTGACAGCAAGGGGCTTGGCTGCAAGAGGGGCAGCCC Direct Loss 0.963986315765551 0 NA NA prediction 0.927972631531101 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976927 chr1:46976927 synonymous SNV . 0 21 hm7G_associated_SNPs_1895 0 0 0 0 1 DMBX1 chr1:46976955 5'GT 46976955 Upstream 29bp 1859 chr8 145617706 145617706 1 + G A rs187052232 145617706 + 145617686 145617726 41 ATGCAGCGCCCCGTGCGCCTGGGGCAGCTGTGGGGCTCGCA ATGCAGCGCCCCGTGCGCCTAGGGCAGCTGTGGGGCTCGCA Direct Loss 0.963973807157833 0 NA NA prediction 0.927947614315665 Functional Loss - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145617706 chr8:145617706 synonymous SNV . 0 21 hm7G_associated_SNPs_1896 0 0 0 0 1 ADCK5 chr8:145617660 3'AG 145617660 Downstream 47bp 1860 chr1 197898176 197898176 1 + G T SARC 197898176 + 197898156 197898196 41 AAATTCAGAAGGAACCTTTTGCGGCAGGAGAATGGGGGTGT AAATTCAGAAGGAACCTTTTTCGGCAGGAGAATGGGGGTGT Direct Loss 0.963967559670268 0 NA NA prediction 0.927935119340537 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197898176 chr1:197898176 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_1897 0 0 1 0 1 LHX9 chr1:197898132 3'AG 197898132 Downstream 45bp 1861 chr6 2779665 2779665 1 + G A LUSC 2779665 + 2779645 2779685 41 TATTCTCCCAGTAGAGTTCTGATCACAGAGAATGACGTGAA TATTCTCCCAGTAGAGTTCTAATCACAGAGAATGACGTGAA Direct Loss 0.963948328371536 0 NA NA prediction 0.927896656743071 Functional Loss - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2779665 chr6:2779665 synonymous SNV . 0 21 hm7G_associated_SNPs_1899 0 0 1 0 1 WRNIP1 chr6:2779726 5'GT 2779726 Upstream 62bp 1862 chr19 49416330 49416330 1 + G A STAD 49416330 + 49416310 49416350 41 GAGTTCAAGCGCTACGAGATGCTTAAGGAACACGAGAGACG GAGTTCAAGCGCTACGAGATACTTAAGGAACACGAGAGACG Direct Loss 0.963908183524676 0 NA NA prediction 0.927816367049351 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49416330 chr19:49416330 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_1902 0 0 1 0 1 NUCB1 chr19:49416268 3'AG 49416268 Downstream 63bp 1863 chr10 88718517 88718517 1 + G T UCEC 88718517 + 88718497 88718537 41 GTGGTGGGTGCGGTGGAAAAGACCAAGCAGGGGGTGACGGA GTGGTGGGTGCGGTGGAAAATACCAAGCAGGGGGTGACGGA Direct Loss 0.9638961581248 0 NA NA prediction 0.9277923162496 Functional Loss - SNCG ENSG00000173267 CDS Human protein_coding chr10:88718517 chr10:88718517 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_1903 0 0 1 0 1 SNCG chr10:88718575 5'GT 88718575 Upstream 59bp 1864 chr1 171227332 171227332 1 + G T COAD 171227332 + 171227312 171227352 41 CCTGCTTTGAGAGGAGCGATGACCTTGGGGGGCTGTGGAGA CCTGCTTTGAGAGGAGCGATTACCTTGGGGGGCTGTGGAGA Direct Loss 0.963888596453289 0 NA NA prediction 0.927777192906578 Functional Loss - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171227332 chr1:171227332 nonsynonymous SNV 0.047 3 21 hm7G_associated_SNPs_1904 0 0 0 0 1 FMO1 chr1:171227358 5'GT 171227358 Upstream 27bp 1865 chr1 156562240 156562240 1 + G C BRCA 156562240 + 156562220 156562260 41 AATAATGGAGGAGATGGTCTGGTCTGTGCTCGACACCTCAA AATAATGGAGGAGATGGTCTCGTCTGTGCTCGACACCTCAA Direct Loss 0.96388458171442 0 NA NA prediction 0.92776916342884 Functional Loss - NAXE ENSG00000163382 CDS Human protein_coding chr1:156562240 chr1:156562240 synonymous SNV . 0 21 hm7G_associated_SNPs_1905 0 0 1 0 2 NAXE chr1:156562157 3'AG 156562157 Downstream 84bp 1866 chr1 156562240 156562240 1 + G C BRCA 156562240 + 156562220 156562260 41 AATAATGGAGGAGATGGTCTGGTCTGTGCTCGACACCTCAA AATAATGGAGGAGATGGTCTCGTCTGTGCTCGACACCTCAA Direct Loss 0.96388458171442 0 NA NA prediction 0.92776916342884 Functional Loss - NAXE ENSG00000163382 CDS Human protein_coding chr1:156562240 chr1:156562240 synonymous SNV . 0 21 hm7G_associated_SNPs_1905 0 0 1 0 2 NAXE chr1:156562267 5'GT 156562267 Upstream 28bp 1867 chr1 155106009 155106009 1 + G A HNSC 155106009 + 155105989 155106029 41 CCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGTGACTG CCACCAGCATGAAGACCGCTACTTGAGGTTGAAGGTGACTG Direct Loss 0.963884193662041 0 NA NA prediction 0.927768387324082 Functional Loss - EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106009 chr1:155106009 nonsynonymous SNV 0.967 5 21 hm7G_associated_SNPs_1906 0 0 1 0 2 EFNA1 chr1:155105979 3'AG 155105979 Downstream 31bp 1868 chr1 155106009 155106009 1 + G A HNSC 155106009 + 155105989 155106029 41 CCACCAGCATGAAGACCGCTGCTTGAGGTTGAAGGTGACTG CCACCAGCATGAAGACCGCTACTTGAGGTTGAAGGTGACTG Direct Loss 0.963884193662041 0 NA NA prediction 0.927768387324082 Functional Loss - EFNA1 ENSG00000169242 CDS Human protein_coding chr1:155106009 chr1:155106009 nonsynonymous SNV 0.967 5 21 hm7G_associated_SNPs_1906 0 0 1 0 2 EFNA1 chr1:155106044 5'GT 155106044 Upstream 36bp 1869 chr15 27182432 27182432 1 + G A LUSC 27182432 + 27182412 27182452 41 AGACTGAACCAGTACCACCTGATGGGGCAGACGGTGGGCAC AGACTGAACCAGTACCACCTAATGGGGCAGACGGTGGGCAC Direct Loss 0.963836583081338 0 NA NA prediction 0.927673166162676 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27182432 chr15:27182432 synonymous SNV . 0 21 hm7G_associated_SNPs_1908 0 0 0 0 1 GABRA5 chr15:27182475 5'GT 27182475 Upstream 44bp 1870 chr16 81301520 81301520 1 + G T UCEC 81301520 + 81301500 81301540 41 TTTGTCTTGCTAGAGGGCAAGAAGCAGGGGAAGAGCCCCTG TTTGTCTTGCTAGAGGGCAATAAGCAGGGGAAGAGCCCCTG Direct Loss 0.963822496782348 0 NA NA prediction 0.927644993564697 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81301520 chr16:81301520 nonsynonymous SNV 0.074 1 21 hm7G_associated_SNPs_1909 0 0 0 0 1 BCO1 chr16:81301513 3'AG 81301513 Downstream 8bp 1871 chr17 16285314 16285314 1 + G T UCEC 16285314 + 16285294 16285334 41 AATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCC AATGTGAAGGCCAAGATCCATGATAAGGAAGGCATTCCCCC Direct Loss 0.963789888903 0 NA NA prediction 0.927579777806 Functional Loss - UBB ENSG00000170315 CDS Human protein_coding chr17:16285314 chr17:16285314 nonsynonymous SNV 0.818 0 21 hm7G_associated_SNPs_1911 0 0 1 0 1 UBB chr17:16285216 3'AG 16285216 Downstream 99bp 1872 chr15 43641146 43641146 1 + G A LUSC 43641146 + 43641126 43641166 41 ACACAAATACTCCTGGATCTGCTTCCTGACAGAATCGGGCA ACACAAATACTCCTGGATCTACTTCCTGACAGAATCGGGCA Direct Loss 0.963766400975853 0 NA NA prediction 0.927532801951707 Functional Loss - ADAL ENSG00000168803 CDS Human protein_coding chr15:43641146 chr15:43641146 synonymous SNV . 0 21 hm7G_associated_SNPs_1912 0 0 0 0 2 ADAL chr15:43641105 3'AG 43641105 Downstream 42bp 1873 chr15 43641146 43641146 1 + G A LUSC 43641146 + 43641126 43641166 41 ACACAAATACTCCTGGATCTGCTTCCTGACAGAATCGGGCA ACACAAATACTCCTGGATCTACTTCCTGACAGAATCGGGCA Direct Loss 0.963766400975853 0 NA NA prediction 0.927532801951707 Functional Loss - ADAL ENSG00000168803 CDS Human protein_coding chr15:43641146 chr15:43641146 synonymous SNV . 0 21 hm7G_associated_SNPs_1912 0 0 0 0 2 ADAL chr15:43641243 5'GT 43641243 Upstream 98bp 1874 chr3 52570891 52570891 1 + G A UCEC 52570891 + 52570871 52570911 41 GGAACGATGGAGTGGATCATGATTAAAGTGCGCGTGGGCCA GGAACGATGGAGTGGATCATAATTAAAGTGCGCGTGGGCCA Direct Loss 0.963715207537656 0 NA NA prediction 0.927430415075311 Functional Loss - SMIM4 ENSG00000168273 CDS Human protein_coding chr3:52570891 chr3:52570891 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1914 0 0 1 0 1 SMIM4 chr3:52570922 5'GT 52570922 Upstream 32bp 1875 chr6 35716380 35716380 1 + G A LAML 35716380 + 35716360 35716400 41 AGTCTCCTGTATGAGGTACTGGTGTTTGCTGAGCGGCTGAG AGTCTCCTGTATGAGGTACTAGTGTTTGCTGAGCGGCTGAG Direct Loss 0.963699742610482 0 NA NA prediction 0.927399485220963 Functional Loss - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35716380 chr6:35716380 synonymous SNV . 0 21 hm7G_associated_SNPs_1915 0 0 0 0 2 ARMC12 chr6:35716315 3'AG 35716315 Downstream 66bp 1876 chr6 35716380 35716380 1 + G A LAML 35716380 + 35716360 35716400 41 AGTCTCCTGTATGAGGTACTGGTGTTTGCTGAGCGGCTGAG AGTCTCCTGTATGAGGTACTAGTGTTTGCTGAGCGGCTGAG Direct Loss 0.963699742610482 0 NA NA prediction 0.927399485220963 Functional Loss - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35716380 chr6:35716380 synonymous SNV . 0 21 hm7G_associated_SNPs_1915 0 0 0 0 2 ARMC12 chr6:35716345 3'AG 35716345 Downstream 36bp 1877 chr11 117117608 117117608 1 + G T SARC 117117608 + 117117588 117117628 41 AAAGAGAAGAAGGAGTTTTTGCAGAAGGAGCAGGATCTGAA AAAGAGAAGAAGGAGTTTTTTCAGAAGGAGCAGGATCTGAA Direct Loss 0.963691259592093 0 NA NA prediction 0.927382519184187 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117117608 chr11:117117608 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1916 0 0 1 0 2 RNF214 chr11:117117525 3'AG 117117525 Downstream 84bp 1878 chr11 117117608 117117608 1 + G T SARC 117117608 + 117117588 117117628 41 AAAGAGAAGAAGGAGTTTTTGCAGAAGGAGCAGGATCTGAA AAAGAGAAGAAGGAGTTTTTTCAGAAGGAGCAGGATCTGAA Direct Loss 0.963691259592093 0 NA NA prediction 0.927382519184187 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117117608 chr11:117117608 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1916 0 0 1 0 2 RNF214 chr11:117117664 5'GT 117117664 Upstream 57bp 1879 chr2 101185427 101185427 1 + G T LUSC 101185427 + 101185407 101185447 41 GATATGACTTTGGAAGAGCTGGAGGATCATGAAGACGAGTT GATATGACTTTGGAAGAGCTTGAGGATCATGAAGACGAGTT Direct Loss 0.963682176585008 0 NA NA prediction 0.927364353170015 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101185427 chr2:101185427 synonymous SNV . 0 21 hm7G_associated_SNPs_1917 0 0 1 0 2 PDCL3 chr2:101185393 3'AG 101185393 Downstream 35bp 1880 chr2 101185427 101185427 1 + G T LUSC 101185427 + 101185407 101185447 41 GATATGACTTTGGAAGAGCTGGAGGATCATGAAGACGAGTT GATATGACTTTGGAAGAGCTTGAGGATCATGAAGACGAGTT Direct Loss 0.963682176585008 0 NA NA prediction 0.927364353170015 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101185427 chr2:101185427 synonymous SNV . 0 21 hm7G_associated_SNPs_1917 0 0 1 0 2 PDCL3 chr2:101185483 5'GT 101185483 Upstream 57bp 1881 chr12 96259814 96259814 1 + G A LIHC 96259814 + 96259794 96259834 41 TCCTTTATATCAGAGGTGTGGAAGAAGAGGAAGAAGATGGG TCCTTTATATCAGAGGTGTGAAAGAAGAGGAAGAAGATGGG Direct Loss 0.963656338999419 0 NA NA prediction 0.927312677998838 Functional Loss - SNRPF ENSG00000139343 CDS Human protein_coding chr12:96259814 chr12:96259814 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1919 0 0 1 0 1 SNRPF chr12:96259783 3'AG 96259783 Downstream 32bp 1882 chr1 41461722 41461722 1 + G T LUAD 41461722 + 41461702 41461742 41 AAGAAAAATGCTGATGAAATGGAAAGAGATGGCTGACAGGT AAGAAAAATGCTGATGAAATTGAAAGAGATGGCTGACAGGT Direct Loss 0.9636414798645 0 NA NA prediction 0.927282959729 Functional Loss - CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41461722 chr1:41461722 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1920 0 0 1 0 1 CTPS1 chr1:41461740 5'GT 41461740 Upstream 19bp 1883 chr1 154295829 154295829 1 + G T SKCM 154295829 + 154295809 154295849 41 TCCCTGAACAATGGCTTCCTGGATCAGGTAAGTGTGAGGGG TCCCTGAACAATGGCTTCCTTGATCAGGTAAGTGTGAGGGG Direct Loss 0.963632968500873 0 NA NA prediction 0.927265937001745 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295829 chr1:154295829 synonymous SNV . 0 21 hm7G_associated_SNPs_1921 0 0 0 0 1 AQP10 chr1:154295835 5'GT 154295835 Upstream 7bp 1884 chr11 102076754 102076754 1 + G A UCEC 102076754 + 102076734 102076774 41 CAGATGCGACTGCAGCAACTGCAGATGGAGAAGGAGAGGCT CAGATGCGACTGCAGCAACTACAGATGGAGAAGGAGAGGCT Direct Loss 0.963631231280948 0 NA NA prediction 0.927262462561896 Functional Loss - YAP1 ENSG00000137693 CDS Human protein_coding chr11:102076754 chr11:102076754 synonymous SNV . 0 21 hm7G_associated_SNPs_1922 0 0 1 0 2 YAP1 chr11:102076805 5'GT 102076805 Upstream 52bp 1885 chr11 102076754 102076754 1 + G A UCEC 102076754 + 102076734 102076774 41 CAGATGCGACTGCAGCAACTGCAGATGGAGAAGGAGAGGCT CAGATGCGACTGCAGCAACTACAGATGGAGAAGGAGAGGCT Direct Loss 0.963631231280948 0 NA NA prediction 0.927262462561896 Functional Loss - YAP1 ENSG00000137693 CDS Human protein_coding chr11:102076754 chr11:102076754 synonymous SNV . 0 21 hm7G_associated_SNPs_1922 0 0 1 0 2 YAP1 chr11:102076817 5'GT 102076817 Upstream 64bp 1886 chr5 23524559 23524559 1 + G T SARC 23524559 + 23524539 23524579 41 AGGCTGTGAACTGCTGGTCTGGTATGGGGATGAATACGGCC AGGCTGTGAACTGCTGGTCTTGTATGGGGATGAATACGGCC Direct Loss 0.963591456862655 0 NA NA prediction 0.927182913725309 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524559 chr5:23524559 nonsynonymous SNV 0.989 3 21 hm7G_associated_SNPs_1923 0 0 0 0 1 PRDM9 chr5:23524636 5'GT 23524636 Upstream 78bp 1887 chr8 48955640 48955640 1 + G T SKCM 48955640 + 48955620 48955660 41 TGTTGGAAGAACTTGAAGAAGGACAAAAAGGAGTAGGCGAC TGTTGGAAGAACTTGAAGAATGACAAAAAGGAGTAGGCGAC Direct Loss 0.963574310987896 0 NA NA prediction 0.927148621975792 Functional Loss - UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48955640 chr8:48955640 stopgain 1.000 1 21 hm7G_associated_SNPs_1924 0 0 1 0 1 UBE2V2 chr8:48955593 3'AG 48955593 Downstream 48bp 1888 chr11 93088609 93088609 1 + G A HNSC 93088609 + 93088589 93088629 41 ATGGTAAGCAACAAGAAAATGGATTGGGAAAGAAAGATGCG ATGGTAAGCAACAAGAAAATAGATTGGGAAAGAAAGATGCG Direct Loss 0.963550314144931 0 NA NA prediction 0.927100628289862 Functional Loss - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93088609 chr11:93088609 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_1926 0 0 0 0 2 DEUP1 chr11:93088537 3'AG 93088537 Downstream 73bp 1889 chr11 93088609 93088609 1 + G A HNSC 93088609 + 93088589 93088629 41 ATGGTAAGCAACAAGAAAATGGATTGGGAAAGAAAGATGCG ATGGTAAGCAACAAGAAAATAGATTGGGAAAGAAAGATGCG Direct Loss 0.963550314144931 0 NA NA prediction 0.927100628289862 Functional Loss - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93088609 chr11:93088609 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_1926 0 0 0 0 2 DEUP1 chr11:93088708 5'GT 93088708 Upstream 100bp 1890 chr6 43488984 43488984 1 + G A BLCA 43488984 + 43488964 43489004 41 AGTGAAGCCATCAAAGTACTGATGGGGAAGTGCCGGCGCTT AGTGAAGCCATCAAAGTACTAATGGGGAAGTGCCGGCGCTT Direct Loss 0.9635272808212 0 NA NA prediction 0.9270545616424 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488984 chr6:43488984 synonymous SNV . 0 21 hm7G_associated_SNPs_1927 0 0 1 0 1 POLR1C chr6:43488920 3'AG 43488920 Downstream 65bp 1891 chr17 4923965 4923965 1 + G T HNSC 4923965 + 4923945 4923985 41 ATCGACATAAAGCTGGAAATGGAGAAGAGGTGCGAGGGGGT ATCGACATAAAGCTGGAAATTGAGAAGAGGTGCGAGGGGGT Direct Loss 0.963509268134231 0 NA NA prediction 0.927018536268463 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923965 chr17:4923965 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1928 0 0 1 0 1 KIF1C chr17:4923973 5'GT 4923973 Upstream 9bp 1892 chr9 100777690 100777690 1 + G T UCEC 100777690 + 100777670 100777710 41 AAAAGAGGAAGAGAGAAACAGATGATGAAGGAGAAGATGAT AAAAGAGGAAGAGAGAAACATATGATGAAGGAGAAGATGAT Direct Loss 0.963509117282003 0 NA NA prediction 0.927018234564006 Functional Loss - ANP32B ENSG00000136938 CDS Human protein_coding chr9:100777690 chr9:100777690 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1929 0 0 1 0 1 ANP32B chr9:100777646 3'AG 100777646 Downstream 45bp 1893 chr7 96636997 96636997 1 + G A BLCA 96636997 + 96636977 96637017 41 ACGGGGAAATCAGGTTCAATGGAAAAGGGAAAAAGATTCGG ACGGGGAAATCAGGTTCAATAGAAAAGGGAAAAAGATTCGG Direct Loss 0.963474977457679 0 NA NA prediction 0.926949954915359 Functional Loss - DLX6 ENSG00000006377 CDS Human protein_coding chr7:96636997 chr7:96636997 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_1932 0 0 0 0 1 DLX6 chr7:96636950 3'AG 96636950 Downstream 48bp 1894 chrX 69503406 69503406 1 + G A UCEC 69503406 + 69503386 69503426 41 GATAAGTGGGTAGAACACGTGCGAGCAGAAAGAGGTGACGA GATAAGTGGGTAGAACACGTACGAGCAGAAAGAGGTGACGA Direct Loss 0.963451466880433 0 NA NA prediction 0.926902933760866 Functional Loss - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69503406 chrX:69503406 synonymous SNV . 0 21 hm7G_associated_SNPs_1933 0 0 0 0 2 RAB41 chrX:69503363 3'AG 69503363 Downstream 44bp 1895 chrX 69503406 69503406 1 + G A UCEC 69503406 + 69503386 69503426 41 GATAAGTGGGTAGAACACGTGCGAGCAGAAAGAGGTGACGA GATAAGTGGGTAGAACACGTACGAGCAGAAAGAGGTGACGA Direct Loss 0.963451466880433 0 NA NA prediction 0.926902933760866 Functional Loss - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69503406 chrX:69503406 synonymous SNV . 0 21 hm7G_associated_SNPs_1933 0 0 0 0 2 RAB41 chrX:69503474 5'GT 69503474 Upstream 69bp 1896 chr10 94452173 94452173 1 + G T UCEC 94452173 + 94452153 94452193 41 GCAGAGGCCTCTGCATAAAAGGAAAGGCGGCCAGGTGAGAT GCAGAGGCCTCTGCATAAAATGAAAGGCGGCCAGGTGAGAT Direct Loss 0.963426217009516 0 NA NA prediction 0.926852434019033 Functional Loss - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452173 chr10:94452173 nonsynonymous SNV 0.368 5 21 hm7G_associated_SNPs_1936 0 0 1 0 1 HHEX chr10:94452125 3'AG 94452125 Downstream 49bp 1897 chrX 19377618 19377618 1 + G T SKCM 19377618 + 19377598 19377638 41 AATTTTTAGGAAATTGATGTGGAAGTGAGGAAGGAGATTGA AATTTTTAGGAAATTGATGTTGAAGTGAGGAAGGAGATTGA Direct Loss 0.963406182536569 0 NA NA prediction 0.926812365073138 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19377618 chrX:19377618 synonymous SNV . 0 21 hm7G_associated_SNPs_1937 0 0 1 0 1 PDHA1 chrX:19377607 3'AG 19377607 Downstream 12bp 1898 chr10 135053310 135053310 1 + G A OV 135053310 + 135053290 135053330 41 CCTCTGGAGCGGAAGAGGCTGGCCAGGGAGATGCAGCTCTC CCTCTGGAGCGGAAGAGGCTAGCCAGGGAGATGCAGCTCTC Direct Loss 0.963298659272341 0 NA NA prediction 0.926597318544683 Functional Loss - VENTX ENSG00000151650 CDS Human protein_coding chr10:135053310 chr10:135053310 synonymous SNV . 0 21 hm7G_associated_SNPs_1939 0 0 0 0 1 VENTX chr10:135053340 5'GT 135053340 Upstream 31bp 1899 chr9 103271362 103271362 1 + G A SARC 103271362 + 103271342 103271382 41 AATGCTTTCTCAGAAGGGCTGCTTGTAAGCACCAGAAAGAG AATGCTTTCTCAGAAGGGCTACTTGTAAGCACCAGAAAGAG Direct Loss 0.963295293136448 0 NA NA prediction 0.926590586272897 Functional Loss - MSANTD3-TMEFF1;TMEFF1 ENSG00000241697;ENSG00000251349 CDS Human other chr9:103271362 chr9:103271362 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1940 0 0 1 0 2 MSANTD3-TMEFF1;TMEFF1 chr9:103271287 3'AG 103271287 Downstream 76bp 1900 chr9 103271362 103271362 1 + G A SARC 103271362 + 103271342 103271382 41 AATGCTTTCTCAGAAGGGCTGCTTGTAAGCACCAGAAAGAG AATGCTTTCTCAGAAGGGCTACTTGTAAGCACCAGAAAGAG Direct Loss 0.963295293136448 0 NA NA prediction 0.926590586272897 Functional Loss - MSANTD3-TMEFF1;TMEFF1 ENSG00000241697;ENSG00000251349 CDS Human other chr9:103271362 chr9:103271362 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1940 0 0 1 0 2 MSANTD3-TMEFF1;TMEFF1 chr9:103271416 5'GT 103271416 Upstream 55bp 1901 chr4 88732565 88732565 1 + G A SKCM 88732565 + 88732545 88732585 41 AGAAGGAAAGTGATGAAGAAGAAGAGGAGGAAGAGGAAGGA AGAAGGAAAGTGATGAAGAAAAAGAGGAGGAAGAGGAAGGA Direct Loss 0.96329028519934 0 NA NA prediction 0.926580570398681 Functional Loss - IBSP ENSG00000029559 CDS Human protein_coding chr4:88732565 chr4:88732565 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_1941 0 0 0 0 1 IBSP chr4:88732514 3'AG 88732514 Downstream 52bp 1902 chr13 25272843 25272843 1 + G A SKCM 25272843 + 25272823 25272863 41 CACGGCAAGCGCTTCCTCATGGTGATGAAGGGGGCCCCTGA CACGGCAAGCGCTTCCTCATAGTGATGAAGGGGGCCCCTGA Direct Loss 0.963279538657556 0 NA NA prediction 0.926559077315112 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25272843 chr13:25272843 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_1942 0 0 0 0 1 ATP12A chr13:25272796 3'AG 25272796 Downstream 48bp 1903 chr7 102112937 102112937 1 + G T KIRC 102112937 + 102112917 102112957 41 CCTGGGCACCATCTGCCTGTGGAGCTGGAGGCAGACGTGGG CCTGGGCACCATCTGCCTGTTGAGCTGGAGGCAGACGTGGG Direct Loss 0.9632757279758 0 NA NA prediction 0.926551455951601 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102112937 chr7:102112937 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1943 0 0 1 0 1 LRWD1 chr7:102112901 3'AG 102112901 Downstream 37bp 1904 chr11 57115696 57115696 1 + G A SKCM 57115696 + 57115676 57115716 41 TCTGTGCTCCGGACCTGTGAGATCCAGGGCTGGTGCCCCAC TCTGTGCTCCGGACCTGTGAAATCCAGGGCTGGTGCCCCAC Direct Loss 0.963234760352748 0 NA NA prediction 0.926469520705497 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57115696 chr11:57115696 synonymous SNV . 0 21 hm7G_associated_SNPs_1946 0 0 0 0 2 P2RX3 chr11:57115644 3'AG 57115644 Downstream 53bp 1905 chr11 57115696 57115696 1 + G A SKCM 57115696 + 57115676 57115716 41 TCTGTGCTCCGGACCTGTGAGATCCAGGGCTGGTGCCCCAC TCTGTGCTCCGGACCTGTGAAATCCAGGGCTGGTGCCCCAC Direct Loss 0.963234760352748 0 NA NA prediction 0.926469520705497 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57115696 chr11:57115696 synonymous SNV . 0 21 hm7G_associated_SNPs_1946 0 0 0 0 2 P2RX3 chr11:57115737 5'GT 57115737 Upstream 42bp 1906 chr8 82196159 82196159 1 + G A SKCM 82196159 + 82196139 82196179 41 TTCAGCATCAGGAGTGGGATGGGAAGGAAAGCACAATAACA TTCAGCATCAGGAGTGGGATAGGAAGGAAAGCACAATAACA Direct Loss 0.963229983234865 0 NA NA prediction 0.92645996646973 Functional Loss - FABP5 ENSG00000164687 CDS Human protein_coding chr8:82196159 chr8:82196159 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1947 0 0 0 0 2 FABP5 chr8:82196108 3'AG 82196108 Downstream 52bp 1907 chr8 82196159 82196159 1 + G A SKCM 82196159 + 82196139 82196179 41 TTCAGCATCAGGAGTGGGATGGGAAGGAAAGCACAATAACA TTCAGCATCAGGAGTGGGATAGGAAGGAAAGCACAATAACA Direct Loss 0.963229983234865 0 NA NA prediction 0.92645996646973 Functional Loss - FABP5 ENSG00000164687 CDS Human protein_coding chr8:82196159 chr8:82196159 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_1947 0 0 0 0 2 FABP5 chr8:82196209 5'GT 82196209 Upstream 51bp 1908 chr12 27944681 27944681 1 + G T LUAD 27944681 + 27944661 27944701 41 CTGTTAATTCAAAACTCTATGCCATCGGAGGGCAGGCCGTT CTGTTAATTCAAAACTCTATTCCATCGGAGGGCAGGCCGTT Direct Loss 0.963211164375201 0 NA NA prediction 0.926422328750403 Functional Loss - KLHL42 ENSG00000087448 CDS Human protein_coding chr12:27944681 chr12:27944681 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_1948 0 0 1 0 1 KLHL42 chr12:27944641 3'AG 27944641 Downstream 41bp 1909 chrX 18912363 18912363 1 + G T LUAD 18912363 + 18912343 18912383 41 ACTGGCCATCTGCACGATCTGGTCCACGTGGATGATGCCCC ACTGGCCATCTGCACGATCTTGTCCACGTGGATGATGCCCC Direct Loss 0.963205986438285 0 NA NA prediction 0.926411972876569 Functional Loss - PHKA2 ENSG00000044446 CDS Human antisense chrX:18912363 chrX:18912363 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1949 0 0 0 0 1 PHKA2-AS1 chrX:18912265 3'AG 18912265 Downstream 99bp 1910 chr13 99852952 99852952 1 - C A rs7331894 99852952 - 99852932 99852972 41 TCCTGCCGGGGAAGGGAAGTGCGTCGGTAGGGGAGGGCTCA TCCTGCCGGGGAAGGGAAGTTCGTCGGTAGGGGAGGGCTCA Direct Loss 0.963200793824448 0 NA NA prediction 0.926401587648895 Functional Loss - UBAC2-AS1 ENSG00000228889 ncRNA_exonic Human lincRNA chr13:99852952 chr13:99852952 . . 0 21 hm7G_associated_SNPs_1950 0 0 0 0 1 UBAC2-AS1 chr13:99852892 5'GT 99852892 Upstream 61bp 1911 chr1 230903311 230903311 1 + G A LUSC 230903311 + 230903291 230903331 41 AATGGGAGCTATGAAGCTCTGAAGGGAGGCAGCGCCATCGA AATGGGAGCTATGAAGCTCTAAAGGGAGGCAGCGCCATCGA Direct Loss 0.963196083604709 0 NA NA prediction 0.926392167209419 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230903311 chr1:230903311 synonymous SNV . 0 21 hm7G_associated_SNPs_1951 0 0 0 0 1 CAPN9 chr1:230903287 3'AG 230903287 Downstream 25bp 1912 chr17 7249762 7249762 1 + G T LUAD 7249762 + 7249742 7249782 41 TCTCTGCACAGTGAAACTCTGCCCTGACTCAGAAAGGCGGT TCTCTGCACAGTGAAACTCTTCCCTGACTCAGAAAGGCGGT Direct Loss 0.963194817007244 0 NA NA prediction 0.926389634014487 Functional Loss - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7249762 chr17:7249762 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_1952 0 0 0 0 2 ACAP1 chr17:7249710 3'AG 7249710 Downstream 53bp 1913 chr17 7249762 7249762 1 + G T LUAD 7249762 + 7249742 7249782 41 TCTCTGCACAGTGAAACTCTGCCCTGACTCAGAAAGGCGGT TCTCTGCACAGTGAAACTCTTCCCTGACTCAGAAAGGCGGT Direct Loss 0.963194817007244 0 NA NA prediction 0.926389634014487 Functional Loss - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7249762 chr17:7249762 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_1952 0 0 0 0 2 ACAP1 chr17:7249810 5'GT 7249810 Upstream 49bp 1914 chr10 95418703 95418703 1 + G A rs150112560 95418703 + 95418683 95418723 41 GTTGATGCCTGTGAACAAATGCAAACGGAAGAAGAAGCCAT GTTGATGCCTGTGAACAAATACAAACGGAAGAAGAAGCCAT Direct Loss 0.963178976390313 0 NA NA prediction 0.926357952780627 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95418703 chr10:95418703 nonsynonymous SNV 0.709 1 21 hm7G_associated_SNPs_1954 2 0 0 0 2 PDE6C chr10:95418658 3'AG 95418658 Downstream 46bp 1915 chr10 95418703 95418703 1 + G A rs150112560 95418703 + 95418683 95418723 41 GTTGATGCCTGTGAACAAATGCAAACGGAAGAAGAAGCCAT GTTGATGCCTGTGAACAAATACAAACGGAAGAAGAAGCCAT Direct Loss 0.963178976390313 0 NA NA prediction 0.926357952780627 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95418703 chr10:95418703 nonsynonymous SNV 0.709 1 21 hm7G_associated_SNPs_1954 2 0 0 0 2 PDE6C chr10:95418765 5'GT 95418765 Upstream 63bp 1916 chr7 95726867 95726867 1 + G A SKCM 95726867 + 95726847 95726887 41 AAATTCGTGCTAACAGAGCTGATAGCGAGGAGGAAGGCACT AAATTCGTGCTAACAGAGCTAATAGCGAGGAGGAAGGCACT Direct Loss 0.963166475110044 0 NA NA prediction 0.926332950220089 Functional Loss - DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95726867 chr7:95726867 nonsynonymous SNV 0.989 2 21 hm7G_associated_SNPs_1955 0 0 0 0 1 DYNC1I1 chr7:95726795 3'AG 95726795 Downstream 73bp 1917 chr17 61908904 61908904 1 + G A BLCA 61908904 + 61908884 61908924 41 AAGATTCATTCTCGGAAGATGAACCTGACCCGGGGGATCAA AAGATTCATTCTCGGAAGATAAACCTGACCCGGGGGATCAA Direct Loss 0.963153466565608 0 NA NA prediction 0.926306933131215 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908904 chr17:61908904 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1958 0 0 1 0 2 PSMC5 chr17:61908866 3'AG 61908866 Downstream 39bp 1918 chr17 61908904 61908904 1 + G A BLCA 61908904 + 61908884 61908924 41 AAGATTCATTCTCGGAAGATGAACCTGACCCGGGGGATCAA AAGATTCATTCTCGGAAGATAAACCTGACCCGGGGGATCAA Direct Loss 0.963153466565608 0 NA NA prediction 0.926306933131215 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908904 chr17:61908904 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1958 0 0 1 0 2 PSMC5 chr17:61908976 5'GT 61908976 Upstream 73bp 1919 chr20 49434759 49434759 1 + G A SKCM 49434759 + 49434739 49434779 41 CTTTTTCAGGCGAAGGAGGTGGAGGAGACCATCGAGGGCAT CTTTTTCAGGCGAAGGAGGTAGAGGAGACCATCGAGGGCAT Direct Loss 0.963149476866901 0 NA NA prediction 0.926298953733802 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49434759 chr20:49434759 synonymous SNV . 0 21 hm7G_associated_SNPs_1960 0 0 0 0 2 BCAS4 chr20:49434748 3'AG 49434748 Downstream 12bp 1920 chr20 49434759 49434759 1 + G A SKCM 49434759 + 49434739 49434779 41 CTTTTTCAGGCGAAGGAGGTGGAGGAGACCATCGAGGGCAT CTTTTTCAGGCGAAGGAGGTAGAGGAGACCATCGAGGGCAT Direct Loss 0.963149476866901 0 NA NA prediction 0.926298953733802 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49434759 chr20:49434759 synonymous SNV . 0 21 hm7G_associated_SNPs_1960 0 0 0 0 2 BCAS4 chr20:49434819 5'GT 49434819 Upstream 61bp 1921 chr17 27898952 27898952 1 + G T OV 27898952 + 27898932 27898972 41 TGGGCTGCCCACTGGCTGATGAGGAGGCGGAGGAGGAAGCA TGGGCTGCCCACTGGCTGATTAGGAGGCGGAGGAGGAAGCA Direct Loss 0.963109655467493 0 NA NA prediction 0.926219310934987 Functional Loss - TP53I13 ENSG00000167543 CDS Human protein_coding chr17:27898952 chr17:27898952 nonsynonymous SNV 0.692 0 21 hm7G_associated_SNPs_1962 0 0 1 0 1 TP53I13 chr17:27898875 3'AG 27898875 Downstream 78bp 1922 chrX 15822290 15822290 1 + G T UCEC 15822290 + 15822270 15822310 41 AAAGAGAGAGAAGAGGAGGAGCAGAAACGACAGGAGAAGAA AAAGAGAGAGAAGAGGAGGATCAGAAACGACAGGAGAAGAA Direct Loss 0.963050890671593 0 NA NA prediction 0.926101781343185 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15822290 chrX:15822290 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_1965 0 0 1 0 2 ZRSR2 chrX:15822234 3'AG 15822234 Downstream 57bp 1923 chrX 15822290 15822290 1 + G T UCEC 15822290 + 15822270 15822310 41 AAAGAGAGAGAAGAGGAGGAGCAGAAACGACAGGAGAAGAA AAAGAGAGAGAAGAGGAGGATCAGAAACGACAGGAGAAGAA Direct Loss 0.963050890671593 0 NA NA prediction 0.926101781343185 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15822290 chrX:15822290 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_1965 0 0 1 0 2 ZRSR2 chrX:15822320 5'GT 15822320 Upstream 31bp 1924 chr17 42978433 42978433 1 + G A LUAD 42978433 + 42978413 42978453 41 TGCAGGCTGCACTCACTGCTGATGAGAAGTACAAACGGGAG TGCAGGCTGCACTCACTGCTAATGAGAAGTACAAACGGGAG Direct Loss 0.963042934675164 0 NA NA prediction 0.926085869350329 Functional Loss - CCDC103 ENSG00000167131 CDS Human other chr17:42978433 chr17:42978433 nonsynonymous SNV 0.929 4 21 hm7G_associated_SNPs_1966 0 0 0 0 2 CCDC103 chr17:42978358 3'AG 42978358 Downstream 76bp 1925 chr17 42978433 42978433 1 + G A LUAD 42978433 + 42978413 42978453 41 TGCAGGCTGCACTCACTGCTGATGAGAAGTACAAACGGGAG TGCAGGCTGCACTCACTGCTAATGAGAAGTACAAACGGGAG Direct Loss 0.963042934675164 0 NA NA prediction 0.926085869350329 Functional Loss - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42978433 chr17:42978433 nonsynonymous SNV 0.929 4 21 hm7G_associated_SNPs_1966 0 0 0 0 2 CCDC103 chr17:42978509 5'GT 42978509 Upstream 77bp 1926 chr1 230915972 230915972 1 + G A SKCM 230915972 + 230915952 230915992 41 AATTGTCTCTGACTGAGAAAGATGAGGGGCAGGAGGAGTGT AATTGTCTCTGACTGAGAAAAATGAGGGGCAGGAGGAGTGT Direct Loss 0.963042384160328 0 NA NA prediction 0.926084768320656 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230915972 chr1:230915972 nonsynonymous SNV 0.777 4 21 hm7G_associated_SNPs_1967 0 0 0 0 1 CAPN9 chr1:230915925 3'AG 230915925 Downstream 48bp 1927 chr14 23946430 23946430 1 + G A BLCA 23946430 + 23946410 23946450 41 ATTAACTATGAGGAGAGCATGATGGTGCGTTTGAGCGTCAG ATTAACTATGAGGAGAGCATAATGGTGCGTTTGAGCGTCAG Direct Loss 0.963024601007907 0 NA NA prediction 0.926049202015814 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946430 chr14:23946430 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_1968 0 0 1 1 1 NGDN chr14:23946409 3'AG 23946409 Downstream 22bp 1928 chr2 232577179 232577179 1 + G T LUAD 232577179 + 232577159 232577199 41 AAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACG AAGAGGATGGAGATGAAGATTAGGAAGCTGAGTCAGCTACG Direct Loss 0.963021800171852 0 NA NA prediction 0.926043600343703 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232577179 chr2:232577179 stopgain 1.000 0 21 hm7G_associated_SNPs_1969 0 0 1 0 2 PTMA chr2:232577153 3'AG 232577153 Downstream 27bp 1929 chr2 232577179 232577179 1 + G T LUAD 232577179 + 232577159 232577199 41 AAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACG AAGAGGATGGAGATGAAGATTAGGAAGCTGAGTCAGCTACG Direct Loss 0.963021800171852 0 NA NA prediction 0.926043600343703 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232577179 chr2:232577179 stopgain 1.000 0 21 hm7G_associated_SNPs_1969 0 0 1 0 2 PTMA chr2:232577226 5'GT 232577226 Upstream 48bp 1930 chr7 129946636 129946636 1 + G C LUAD 129946636 + 129946616 129946656 41 TCTCTGCTTAGATTGTATCTGATTACCAGAGGGATCCAGCT TCTCTGCTTAGATTGTATCTCATTACCAGAGGGATCCAGCT Direct Loss 0.963020415951729 0 NA NA prediction 0.926040831903458 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946636 chr7:129946636 nonsynonymous SNV 0.990 4 21 hm7G_associated_SNPs_1970 0 0 1 0 1 CPA4 chr7:129946627 3'AG 129946627 Downstream 10bp 1931 chr16 1033788 1033788 1 + G A UCEC 1033788 + 1033768 1033808 41 GCAGAGCGCCTTCGCGTGCAGCACAAGAAGGACCACCCCGA GCAGAGCGCCTTCGCGTGCAACACAAGAAGGACCACCCCGA Direct Loss 0.963012835046547 0 NA NA prediction 0.926025670093093 Functional Loss - SOX8 ENSG00000005513 CDS Human protein_coding chr16:1033788 chr16:1033788 synonymous SNV . 0 21 hm7G_associated_SNPs_1971 0 0 0 0 1 SOX8 chr16:1033728 3'AG 1033728 Downstream 61bp 1932 chr15 45007740 45007740 1 + G T STAD 45007740 + 45007720 45007760 41 AAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTG AAGTTGACTTACTGAAGAATTGAGAGAGAATTGAAAAAGTG Direct Loss 0.962990868097529 0 NA NA prediction 0.925981736195057 Functional Loss - B2M ENSG00000166710 CDS Human protein_coding chr15:45007740 chr15:45007740 stopgain 0.638 1 21 hm7G_associated_SNPs_1973 0 0 1 0 1 B2M chr15:45007757 5'GT 45007757 Upstream 18bp 1933 chr12 112229927 112229927 1 + G T READ 112229927 + 112229907 112229947 41 AAGAGAGTGACCTTGGAGCTGGGGGGGAAGAGCCCCAACAT AAGAGAGTGACCTTGGAGCTTGGGGGGAAGAGCCCCAACAT Direct Loss 0.962964063547202 0 NA NA prediction 0.925928127094404 Functional Loss - ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112229927 chr12:112229927 synonymous SNV . 0 21 hm7G_associated_SNPs_1974 0 0 1 0 2 ALDH2 chr12:112229865 3'AG 112229865 Downstream 63bp 1934 chr12 112229927 112229927 1 + G T READ 112229927 + 112229907 112229947 41 AAGAGAGTGACCTTGGAGCTGGGGGGGAAGAGCCCCAACAT AAGAGAGTGACCTTGGAGCTTGGGGGGAAGAGCCCCAACAT Direct Loss 0.962964063547202 0 NA NA prediction 0.925928127094404 Functional Loss - ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112229927 chr12:112229927 synonymous SNV . 0 21 hm7G_associated_SNPs_1974 0 0 1 0 2 ALDH2 chr12:112229967 5'GT 112229967 Upstream 41bp 1935 chr4 177241368 177241368 1 + G C LUAD 177241368 + 177241348 177241388 41 CTGCACGTCTCGCGGATCATGCTGTGAGTGAGGCCGGGCCG CTGCACGTCTCGCGGATCATCCTGTGAGTGAGGCCGGGCCG Direct Loss 0.96294930818053 0 NA NA prediction 0.92589861636106 Functional Loss - SPCS3 ENSG00000129128 CDS Human protein_coding chr4:177241368 chr4:177241368 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1975 0 0 1 0 1 SPCS3 chr4:177241370 5'GT 177241370 Upstream 3bp 1936 chr10 114046095 114046095 1 + G A KIRC 114046095 + 114046075 114046115 41 AGAGTGGCCACTGTTCACGTGAAGAACGGGAGCATGGGCAC AGAGTGGCCACTGTTCACGTAAAGAACGGGAGCATGGGCAC Direct Loss 0.962929463526315 0 NA NA prediction 0.92585892705263 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114046095 chr10:114046095 synonymous SNV . 0 21 hm7G_associated_SNPs_1976 0 0 0 0 1 TECTB chr10:114046149 5'GT 114046149 Upstream 55bp 1937 chr9 71152367 71152367 1 - C A LUSC 71152367 - 71152347 71152387 41 TATGAAGAGAGCCTTGAGGTGGAAAAGCAGAGCTGTCCTGC TATGAAGAGAGCCTTGAGGTTGAAAAGCAGAGCTGTCCTGC Direct Loss 0.962916647628883 0 NA NA prediction 0.925833295257766 Functional Loss - TMEM252 ENSG00000181778 CDS Human protein_coding chr9:71152367 chr9:71152367 synonymous SNV . 0 21 hm7G_associated_SNPs_1977 0 0 0 0 1 TMEM252 chr9:71152409 3'AG 71152409 Downstream 43bp 1938 chrX 64957138 64957138 1 + G A BRCA 64957138 + 64957118 64957158 41 CCAAGGAGCGTCAAGAAGCTGAAGAGGCCAAGGAGGCCTTG CCAAGGAGCGTCAAGAAGCTAAAGAGGCCAAGGAGGCCTTG Direct Loss 0.962857730139738 0 NA NA prediction 0.925715460279476 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64957138 chrX:64957138 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_1979 0 0 1 0 2 MSN chrX:64957040 3'AG 64957040 Downstream 99bp 1939 chrX 64957138 64957138 1 + G A BRCA 64957138 + 64957118 64957158 41 CCAAGGAGCGTCAAGAAGCTGAAGAGGCCAAGGAGGCCTTG CCAAGGAGCGTCAAGAAGCTAAAGAGGCCAAGGAGGCCTTG Direct Loss 0.962857730139738 0 NA NA prediction 0.925715460279476 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64957138 chrX:64957138 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_1979 0 0 1 0 2 MSN chrX:64957200 5'GT 64957200 Upstream 63bp 1940 chr1 110456967 110456967 1 + G A BLCA 110456967 + 110456947 110456987 41 TCGGAGTACTGTAGCCACATGATTGGGAGTGGACACCTGCA TCGGAGTACTGTAGCCACATAATTGGGAGTGGACACCTGCA Direct Loss 0.962815800067725 0 NA NA prediction 0.92563160013545 Functional Loss - CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456967 chr1:110456967 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1980 0 0 1 0 2 CSF1 chr1:110456881 3'AG 110456881 Downstream 87bp 1941 chr1 110456967 110456967 1 + G A BLCA 110456967 + 110456947 110456987 41 TCGGAGTACTGTAGCCACATGATTGGGAGTGGACACCTGCA TCGGAGTACTGTAGCCACATAATTGGGAGTGGACACCTGCA Direct Loss 0.962815800067725 0 NA NA prediction 0.92563160013545 Functional Loss - CSF1 ENSG00000184371 CDS Human protein_coding chr1:110456967 chr1:110456967 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1980 0 0 1 0 2 CSF1 chr1:110457003 5'GT 110457003 Upstream 37bp 1942 chr1 1848044 1848044 1 + G A SKCM 1848044 + 1848024 1848064 41 GCCTCAATGGCCAAGGATGTGGACAGAGACAGTGAGCTCAT GCCTCAATGGCCAAGGATGTAGACAGAGACAGTGAGCTCAT Direct Loss 0.962801853584686 0 NA NA prediction 0.925603707169373 Functional Loss - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848044 chr1:1848044 synonymous SNV . 0 21 hm7G_associated_SNPs_1981 0 0 0 0 1 CALML6 chr1:1848054 5'GT 1848054 Upstream 11bp 1943 chrX 115586557 115586557 1 + G T UCEC 115586557 + 115586537 115586577 41 ATTGAGGATACAGAAATGATGATTGGAGCAAAGAGGTGGAT ATTGAGGATACAGAAATGATTATTGGAGCAAAGAGGTGGAT Direct Loss 0.962789491926793 0 NA NA prediction 0.925578983853585 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115586557 chrX:115586557 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1982 0 0 1 0 2 SLC6A14 chrX:115586523 3'AG 115586523 Downstream 35bp 1944 chrX 115586557 115586557 1 + G T UCEC 115586557 + 115586537 115586577 41 ATTGAGGATACAGAAATGATGATTGGAGCAAAGAGGTGGAT ATTGAGGATACAGAAATGATTATTGGAGCAAAGAGGTGGAT Direct Loss 0.962789491926793 0 NA NA prediction 0.925578983853585 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115586557 chrX:115586557 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_1982 0 0 1 0 2 SLC6A14 chrX:115586632 5'GT 115586632 Upstream 76bp 1945 chr2 108999900 108999900 1 + G A LIHC 108999900 + 108999880 108999920 41 GGCTCCTGGCATGAACATGTGAAAGGATGGTGGGAAGCCAA GGCTCCTGGCATGAACATGTAAAAGGATGGTGGGAAGCCAA Direct Loss 0.962778363498477 0 NA NA prediction 0.925556726996954 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108999900 chr2:108999900 synonymous SNV . 0 21 hm7G_associated_SNPs_1984 0 0 0 0 1 SULT1C4 chr2:108999966 5'GT 108999966 Upstream 67bp 1946 chr5 148727875 148727875 1 + G A UCEC 148727875 + 148727855 148727895 41 GCACTGCCACCCAGAGAACTGCTGGTGAGGACTGCCGTTCT GCACTGCCACCCAGAGAACTACTGGTGAGGACTGCCGTTCT Direct Loss 0.962775122392359 0 NA NA prediction 0.925550244784717 Functional Loss - GRPEL2 ENSG00000164284 CDS Human protein_coding chr5:148727875 chr5:148727875 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1985 0 0 1 0 1 GRPEL2 chr5:148727835 3'AG 148727835 Downstream 41bp 1947 chr1 100152712 100152712 1 + G A CESC 100152712 + 100152692 100152732 41 GGTTAAGGAAGGAGATAAATGAAGAAAAAGAAGATGATGAA GGTTAAGGAAGGAGATAAATAAAGAAAAAGAAGATGATGAA Direct Loss 0.962759176047956 0 NA NA prediction 0.925518352095912 Functional Loss - PALMD ENSG00000099260 CDS Human protein_coding chr1:100152712 chr1:100152712 nonsynonymous SNV 0.984 0 21 hm7G_associated_SNPs_1986 0 0 0 0 1 PALMD chr1:100152745 5'GT 100152745 Upstream 34bp 1948 chr3 14223144 14223144 1 + G A SKCM 14223144 + 14223124 14223164 41 TTTATGTGAAAATGAGAAATGACCGAGAGCTTCGAGGCAGA TTTATGTGAAAATGAGAAATAACCGAGAGCTTCGAGGCAGA Direct Loss 0.962749519678911 0 NA NA prediction 0.925499039357823 Functional Loss - LSM3 ENSG00000170860 CDS Human protein_coding chr3:14223144 chr3:14223144 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1988 0 0 1 0 2 LSM3 chr3:14223060 3'AG 14223060 Downstream 85bp 1949 chr3 14223144 14223144 1 + G A SKCM 14223144 + 14223124 14223164 41 TTTATGTGAAAATGAGAAATGACCGAGAGCTTCGAGGCAGA TTTATGTGAAAATGAGAAATAACCGAGAGCTTCGAGGCAGA Direct Loss 0.962749519678911 0 NA NA prediction 0.925499039357823 Functional Loss - LSM3 ENSG00000170860 CDS Human protein_coding chr3:14223144 chr3:14223144 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_1988 0 0 1 0 2 LSM3 chr3:14223170 5'GT 14223170 Upstream 27bp 1950 chr4 22737615 22737615 1 + G A LUAD 22737615 + 22737595 22737635 41 TTTTCTCAGGAGGCTGGGATGCAGATGGAAAAGGCCCTTGT TTTTCTCAGGAGGCTGGGATACAGATGGAAAAGGCCCTTGT Direct Loss 0.962743162322794 0 NA NA prediction 0.925486324645588 Functional Loss - GBA3 ENSG00000249948 CDS Human polymorphic_pseudogene chr4:22737615 chr4:22737615 unknown 1.000 0 21 hm7G_associated_SNPs_1989 0 0 0 0 1 GBA3 chr4:22737604 3'AG 22737604 Downstream 12bp 1951 chr19 4352929 4352929 1 + G C BLCA 4352929 + 4352909 4352949 41 GGGGAGGAGGAGGAGTTGCTGATGGAAGAGGAGGAGGAGGA GGGGAGGAGGAGGAGTTGCTCATGGAAGAGGAGGAGGAGGA Direct Loss 0.962732331338279 0 NA NA prediction 0.925464662676559 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4352929 chr19:4352929 synonymous SNV . 0 21 hm7G_associated_SNPs_1990 0 0 0 0 2 MPND chr19:4352894 3'AG 4352894 Downstream 36bp 1952 chr19 4352929 4352929 1 + G C BLCA 4352929 + 4352909 4352949 41 GGGGAGGAGGAGGAGTTGCTGATGGAAGAGGAGGAGGAGGA GGGGAGGAGGAGGAGTTGCTCATGGAAGAGGAGGAGGAGGA Direct Loss 0.962732331338279 0 NA NA prediction 0.925464662676559 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4352929 chr19:4352929 synonymous SNV . 0 21 hm7G_associated_SNPs_1990 0 0 0 0 2 MPND chr19:4353026 5'GT 4353026 Upstream 98bp 1953 chr3 138091773 138091773 1 + G T LUSC 138091773 + 138091753 138091793 41 AACCTCCCCACATACAAGCTGGTGGTGGTGGGGGATGGGGG AACCTCCCCACATACAAGCTTGTGGTGGTGGGGGATGGGGG Direct Loss 0.962717521659897 0 NA NA prediction 0.925435043319794 Functional Loss - MRAS ENSG00000158186 CDS Human protein_coding chr3:138091773 chr3:138091773 synonymous SNV . 0 21 hm7G_associated_SNPs_1991 0 0 0 0 1 MRAS chr3:138091708 3'AG 138091708 Downstream 66bp 1954 chr17 46973071 46973071 1 + G A rs13905 46973071 + 46973051 46973091 41 GCCATTCTTGGCTTTGCCCTGTCTGAGGCCATGGGGCTTTT GCCATTCTTGGCTTTGCCCTATCTGAGGCCATGGGGCTTTT Direct Loss 0.96269574443401 0 NA NA prediction 0.925391488868021 Functional Loss - ATP5G1 ENSG00000159199 CDS Human protein_coding chr17:46973071 chr17:46973071 synonymous SNV . 0 21 hm7G_associated_SNPs_1993 0 0 1 0 1 ATP5G1 chr17:46973017 3'AG 46973017 Downstream 55bp 1955 chr19 38899467 38899467 1 + G A UCEC 38899467 + 38899447 38899487 41 CATGCCCACCTGGAGGAGCCGAAGAGAGGATGGAGGCCCCC CATGCCCACCTGGAGGAGCCAAAGAGAGGATGGAGGCCCCC Direct Loss 0.962665219545462 0 NA NA prediction 0.925330439090924 Functional Loss - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38899467 chr19:38899467 nonsynonymous SNV 0.315 3 21 hm7G_associated_SNPs_1994 0 0 1 0 1 FAM98C chr19:38899391 3'AG 38899391 Downstream 77bp 1956 chr1 43162869 43162869 1 + G A GBM 43162869 + 43162849 43162889 41 AGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCA AGGGTGCTGACAACCAGGGTACAGGAGAACAAGGTAGACCA Direct Loss 0.962601804356618 0 NA NA prediction 0.925203608713236 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43162869 chr1:43162869 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_1998 0 0 1 0 1 YBX1 chr1:43162933 5'GT 43162933 Upstream 65bp 1957 chr2 171716242 171716242 1 + G A SKCM 171716242 + 171716222 171716262 41 GCTCCAAAAATCAAAGCCCTGATGATGGAGTCAGGTACGAC GCTCCAAAAATCAAAGCCCTAATGATGGAGTCAGGTACGAC Direct Loss 0.962585329180944 0 NA NA prediction 0.925170658361888 Functional Loss - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171716242 chr2:171716242 synonymous SNV . 0 21 hm7G_associated_SNPs_1999 0 0 0 0 1 GAD1 chr2:171716219 3'AG 171716219 Downstream 24bp 1958 chr9 133542091 133542091 1 + G T UCEC 133542091 + 133542071 133542111 41 CGGCATCTTCTCCAAGACGTGGATCAAGGCGGGAACCGAGA CGGCATCTTCTCCAAGACGTTGATCAAGGCGGGAACCGAGA Direct Loss 0.962550849179113 0 NA NA prediction 0.925101698358227 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133542091 chr9:133542091 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2000 0 0 0 0 2 PRDM12 chr9:133541995 3'AG 133541995 Downstream 97bp 1959 chr9 133542091 133542091 1 + G T UCEC 133542091 + 133542071 133542111 41 CGGCATCTTCTCCAAGACGTGGATCAAGGCGGGAACCGAGA CGGCATCTTCTCCAAGACGTTGATCAAGGCGGGAACCGAGA Direct Loss 0.962550849179113 0 NA NA prediction 0.925101698358227 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133542091 chr9:133542091 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2000 0 0 0 0 2 PRDM12 chr9:133542185 5'GT 133542185 Upstream 95bp 1960 chr2 88383861 88383861 1 + G A LUSC 88383861 + 88383841 88383881 41 TAATTTTGTGTGCCACACCTGCTTCAAGAGGCAGGAGAAGC TAATTTTGTGTGCCACACCTACTTCAAGAGGCAGGAGAAGC Direct Loss 0.96253610866516 0 NA NA prediction 0.925072217330321 Functional Loss - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88383861 chr2:88383861 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2001 0 0 0 0 1 SMYD1 chr2:88383835 3'AG 88383835 Downstream 27bp 1961 chr1 9642424 9642424 1 + G C rs61741102 9642424 + 9642404 9642444 41 TTTGTCCAGACGGCGCGCCTGGTGTTCCGGGAAGAAGGCTA TTTGTCCAGACGGCGCGCCTCGTGTTCCGGGAAGAAGGCTA Direct Loss 0.962529052987444 0 NA NA prediction 0.925058105974889 Functional Loss - SLC25A33 ENSG00000171612 CDS Human protein_coding chr1:9642424 chr1:9642424 synonymous SNV . 0 21 hm7G_associated_SNPs_2002 0 0 1 0 1 SLC25A33 chr1:9642357 3'AG 9642357 Downstream 68bp 1962 chr9 77752481 77752481 1 + G T LUSC 77752481 + 77752461 77752501 41 TGGGAGATACAGCTTTGCATGCTGCTGCCTGGAAGGGTTAT TGGGAGATACAGCTTTGCATTCTGCTGCCTGGAAGGGTTAT Direct Loss 0.962522324792475 0 NA NA prediction 0.92504464958495 Functional Loss - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77752481 chr9:77752481 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_2004 0 0 1 0 2 OSTF1 chr9:77752454 3'AG 77752454 Downstream 28bp 1963 chr9 77752481 77752481 1 + G T LUSC 77752481 + 77752461 77752501 41 TGGGAGATACAGCTTTGCATGCTGCTGCCTGGAAGGGTTAT TGGGAGATACAGCTTTGCATTCTGCTGCCTGGAAGGGTTAT Direct Loss 0.962522324792475 0 NA NA prediction 0.92504464958495 Functional Loss - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77752481 chr9:77752481 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_2004 0 0 1 0 2 OSTF1 chr9:77752532 5'GT 77752532 Upstream 52bp 1964 chrX 102864065 102864065 1 + G A LUSC 102864065 + 102864045 102864085 41 CAGAAGATGAAGTAGAGCCTGATGATGAAGGAAAGTCAGAC CAGAAGATGAAGTAGAGCCTAATGATGAAGGAAAGTCAGAC Direct Loss 0.962498986732957 0 NA NA prediction 0.924997973465913 Functional Loss - TCEAL3 ENSG00000196507 CDS Human protein_coding chrX:102864065 chrX:102864065 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_2007 0 0 0 0 1 TCEAL3 chrX:102863966 3'AG 102863966 Downstream 100bp 1965 chr7 99917201 99917201 1 + G T UCEC 99917201 + 99917181 99917221 41 TCCTCAGCTATCTGGCCAATGACATGGAGGAGGACGACGAG TCCTCAGCTATCTGGCCAATTACATGGAGGAGGACGACGAG Direct Loss 0.962470366818298 0 NA NA prediction 0.924940733636596 Functional Loss - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99917201 chr7:99917201 nonsynonymous SNV 0.282 2 21 hm7G_associated_SNPs_2008 0 0 0 0 1 SPDYE3 chr7:99917188 3'AG 99917188 Downstream 14bp 1966 chr7 102113165 102113165 1 + G A BLCA 102113165 + 102113145 102113185 41 GGATTGTGCTCTGTGGGGATGAGGAGGGCAACGTGTGGCTC GGATTGTGCTCTGTGGGGATAAGGAGGGCAACGTGTGGCTC Direct Loss 0.962452859284687 0 NA NA prediction 0.924905718569373 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102113165 chr7:102113165 nonsynonymous SNV 0.800 4 21 hm7G_associated_SNPs_2009 0 0 1 0 2 LRWD1 chr7:102113139 3'AG 102113139 Downstream 27bp 1967 chr7 102113165 102113165 1 + G A BLCA 102113165 + 102113145 102113185 41 GGATTGTGCTCTGTGGGGATGAGGAGGGCAACGTGTGGCTC GGATTGTGCTCTGTGGGGATAAGGAGGGCAACGTGTGGCTC Direct Loss 0.962452859284687 0 NA NA prediction 0.924905718569373 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102113165 chr7:102113165 nonsynonymous SNV 0.800 4 21 hm7G_associated_SNPs_2009 0 0 1 0 2 LRWD1 chr7:102113251 5'GT 102113251 Upstream 87bp 1968 chr12 6973028 6973028 1 + G A LUSC 6973028 + 6973008 6973048 41 GAATCAGTCATCATCCAGCTGGTGGAGATGGGATTCCCTAT GAATCAGTCATCATCCAGCTAGTGGAGATGGGATTCCCTAT Direct Loss 0.962450962620243 0 NA NA prediction 0.924901925240486 Functional Loss - USP5 ENSG00000111667 CDS Human protein_coding chr12:6973028 chr12:6973028 synonymous SNV . 0 21 hm7G_associated_SNPs_2010 0 0 1 0 1 USP5 chr12:6972994 3'AG 6972994 Downstream 35bp 1969 chr7 45931652 45931652 1 + G A SKCM 45931652 + 45931632 45931672 41 CAAGAATGGATTTTATCACAGCAGACAGGTAGGTGGCCTTG CAAGAATGGATTTTATCACAACAGACAGGTAGGTGGCCTTG Direct Loss 0.96243557416819 0 NA NA prediction 0.924871148336379 Functional Loss - IGFBP1 ENSG00000146678 CDS Human protein_coding chr7:45931652 chr7:45931652 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_2011 0 0 1 0 1 IGFBP1 chr7:45931659 5'GT 45931659 Upstream 8bp 1970 chr3 53213609 53213609 1 + G A COAD 53213609 + 53213589 53213629 41 GCAGAGCGTGGGAAAACACTGGTGCAGAAGAAGCCGACCAT GCAGAGCGTGGGAAAACACTAGTGCAGAAGAAGCCGACCAT Direct Loss 0.962373543564208 0 NA NA prediction 0.924747087128415 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53213609 chr3:53213609 synonymous SNV . 0 21 hm7G_associated_SNPs_2012 0 0 1 0 1 PRKCD chr3:53213593 3'AG 53213593 Downstream 17bp 1971 chr2 71148259 71148259 1 + G A rs200929150 71148259 + 71148239 71148279 41 ACAATTCGGGAAATTGTCCTGCCTAAGGGCCTGGACCTGGA ACAATTCGGGAAATTGTCCTACCTAAGGGCCTGGACCTGGA Direct Loss 0.962368254400495 0 NA NA prediction 0.92473650880099 Functional Loss - VAX2 ENSG00000116035 CDS Human protein_coding chr2:71148259 chr2:71148259 synonymous SNV . 0 21 hm7G_associated_SNPs_2013 0 0 0 0 1 VAX2 chr2:71148228 3'AG 71148228 Downstream 32bp 1972 chr16 67261781 67261781 1 + G C GBM 67261781 + 67261761 67261801 41 GAGGGAAGAAGCAGATATTTGAAGAGAACAGAGAGACTCTG GAGGGAAGAAGCAGATATTTCAAGAGAACAGAGAGACTCTG Direct Loss 0.962353769705718 0 NA NA prediction 0.924707539411436 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67261781 chr16:67261781 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2014 0 0 1 0 2 TMEM208 chr16:67261739 3'AG 67261739 Downstream 43bp 1973 chr16 67261781 67261781 1 + G C GBM 67261781 + 67261761 67261801 41 GAGGGAAGAAGCAGATATTTGAAGAGAACAGAGAGACTCTG GAGGGAAGAAGCAGATATTTCAAGAGAACAGAGAGACTCTG Direct Loss 0.962353769705718 0 NA NA prediction 0.924707539411436 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67261781 chr16:67261781 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2014 0 0 1 0 2 TMEM208 chr16:67261834 5'GT 67261834 Upstream 54bp 1974 chr14 51094844 51094844 1 + G T BLCA 51094844 + 51094824 51094864 41 GTGAAGCTATTCCGAGGGGTGAAGAAGATGGGTGGGGAAGA GTGAAGCTATTCCGAGGGGTTAAGAAGATGGGTGGGGAAGA Direct Loss 0.962344281479095 0 NA NA prediction 0.924688562958189 Functional Loss - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51094844 chr14:51094844 synonymous SNV . 0 21 hm7G_associated_SNPs_2015 0 0 0 0 1 ATL1 chr14:51094749 3'AG 51094749 Downstream 96bp 1975 chr5 170232728 170232728 1 + G A SKCM 170232728 + 170232708 170232748 41 TTTATTTGCCAGGGGGCTATGATGGAAATGATGTGGAGTTC TTTATTTGCCAGGGGGCTATAATGGAAATGATGTGGAGTTC Direct Loss 0.962306575291328 0 NA NA prediction 0.924613150582656 Functional Loss - GABRP ENSG00000094755 CDS Human protein_coding chr5:170232728 chr5:170232728 nonsynonymous SNV 0.902 1 21 hm7G_associated_SNPs_2016 0 0 0 0 1 GABRP chr5:170232720 3'AG 170232720 Downstream 9bp 1976 chr19 1219356 1219356 1 + G T LUAD 1219356 + 1219336 1219376 41 GAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGACAGCGT GAGTACTGCGTGTGTGGCATTCAGGAAATGCTGGACAGCGT Direct Loss 0.962286172166204 0 NA NA prediction 0.924572344332408 Functional Loss - STK11 ENSG00000118046 CDS Human protein_coding chr19:1219356 chr19:1219356 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_2018 0 0 1 0 1 STK11 chr19:1219412 5'GT 1219412 Upstream 57bp 1977 chr20 29628270 29628270 1 + G A rs545391756 29628270 + 29628250 29628290 41 AAATAGCTGCTTTATTAGATGCAATGAAGCAGGGGACATAG AAATAGCTGCTTTATTAGATACAATGAAGCAGGGGACATAG Direct Loss 0.9622248721237 0 NA NA prediction 0.9244497442474 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628270 chr20:29628270 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_2019 0 0 0 0 2 FRG1BP;FRG1DP chr20:29628227 3'AG 29628227 Downstream 44bp 1978 chr20 29628270 29628270 1 + G A rs545391756 29628270 + 29628250 29628290 41 AAATAGCTGCTTTATTAGATGCAATGAAGCAGGGGACATAG AAATAGCTGCTTTATTAGATACAATGAAGCAGGGGACATAG Direct Loss 0.9622248721237 0 NA NA prediction 0.9244497442474 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628270 chr20:29628270 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_2019 0 0 0 0 2 FRG1BP;FRG1DP chr20:29628331 5'GT 29628331 Upstream 62bp 1979 chr17 21208386 21208386 1 + G A SKCM 21208386 + 21208366 21208406 41 GAGAGGATCAACCCAGAGCTGAACCAGAAGGGCTACAATGT GAGAGGATCAACCCAGAGCTAAACCAGAAGGGCTACAATGT Direct Loss 0.962195248401697 0 NA NA prediction 0.924390496803393 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21208386 chr17:21208386 synonymous SNV . 0 21 hm7G_associated_SNPs_2020 0 0 1 0 2 MAP2K3 chr17:21208363 3'AG 21208363 Downstream 24bp 1980 chr17 21208386 21208386 1 + G A SKCM 21208386 + 21208366 21208406 41 GAGAGGATCAACCCAGAGCTGAACCAGAAGGGCTACAATGT GAGAGGATCAACCCAGAGCTAAACCAGAAGGGCTACAATGT Direct Loss 0.962195248401697 0 NA NA prediction 0.924390496803393 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21208386 chr17:21208386 synonymous SNV . 0 21 hm7G_associated_SNPs_2020 0 0 1 0 2 MAP2K3 chr17:21208440 5'GT 21208440 Upstream 55bp 1981 chrX 76709728 76709728 1 + G T BLCA 76709728 + 76709708 76709748 41 GCCTGTACCTAGGAATGAATGAGCGAGGAGAACTCTATGGG GCCTGTACCTAGGAATGAATTAGCGAGGAGAACTCTATGGG Direct Loss 0.9621820657255 0 NA NA prediction 0.924364131451 Functional Loss - FGF16 ENSG00000196468 CDS Human protein_coding chrX:76709728 chrX:76709728 unknown 0.997 0 21 hm7G_associated_SNPs_2021 0 0 0 0 1 FGF16 chrX:76709751 5'GT 76709751 Upstream 24bp 1982 chr1 156038071 156038071 1 + G T LUSC 156038071 + 156038051 156038091 41 TCCCACCCAGGTACTATCGTGGTGCAGTGGGGGCCCTCCTG TCCCACCCAGGTACTATCGTTGTGCAGTGGGGGCCCTCCTG Direct Loss 0.962178484437211 0 NA NA prediction 0.924356968874423 Functional Loss - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156038071 chr1:156038071 nonsynonymous SNV 0.972 5 21 hm7G_associated_SNPs_2022 0 0 0 0 1 RAB25 chr1:156038061 3'AG 156038061 Downstream 11bp 1983 chr1 160171102 160171102 1 + G A UCEC 160171102 + 160171082 160171122 41 TGCTGAGGAGCTGGAGGACTGGCTGGAGGATGTCCTGGAGG TGCTGAGGAGCTGGAGGACTAGCTGGAGGATGTCCTGGAGG Direct Loss 0.962156659338173 0 NA NA prediction 0.924313318676345 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160171102 chr1:160171102 stopgain 1.000 1 21 hm7G_associated_SNPs_2023 0 0 0 0 1 CASQ1 chr1:160171035 3'AG 160171035 Downstream 68bp 1984 chr2 98354002 98354002 1 + G A SKCM 98354002 + 98353982 98354022 41 TCCATGGGGATGAAGTACCTGGAGGAGAAGAACTTTGTGCA TCCATGGGGATGAAGTACCTAGAGGAGAAGAACTTTGTGCA Direct Loss 0.962139562542934 0 NA NA prediction 0.924279125085867 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98354002 chr2:98354002 synonymous SNV . 0 21 hm7G_associated_SNPs_2024 0 0 1 0 1 ZAP70 chr2:98353936 3'AG 98353936 Downstream 67bp 1985 chr1 55282703 55282703 1 + G A SKCM 55282703 + 55282683 55282723 41 TACCTCAACACCTGGCTGATGGAGACAAAGGACAGGCGGCA TACCTCAACACCTGGCTGATAGAGACAAAGGACAGGCGGCA Direct Loss 0.962110792596182 0 NA NA prediction 0.924221585192364 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55282703 chr1:55282703 nonsynonymous SNV 0.795 0 21 hm7G_associated_SNPs_2025 0 0 0 0 2 LEXM chr1:55282662 3'AG 55282662 Downstream 42bp 1986 chr1 55282703 55282703 1 + G A SKCM 55282703 + 55282683 55282723 41 TACCTCAACACCTGGCTGATGGAGACAAAGGACAGGCGGCA TACCTCAACACCTGGCTGATAGAGACAAAGGACAGGCGGCA Direct Loss 0.962110792596182 0 NA NA prediction 0.924221585192364 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55282703 chr1:55282703 nonsynonymous SNV 0.795 0 21 hm7G_associated_SNPs_2025 0 0 0 0 2 LEXM chr1:55282795 5'GT 55282795 Upstream 93bp 1987 chr17 33486462 33486462 1 + G A OV 33486462 + 33486442 33486482 41 TAGTCAGCAAGAAGGTGTCTGGCCAGGGCAGGGATCAGGCG TAGTCAGCAAGAAGGTGTCTAGCCAGGGCAGGGATCAGGCG Direct Loss 0.962107842236541 0 NA NA prediction 0.924215684473082 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33486462 chr17:33486462 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2026 0 0 0 0 1 UNC45B chr17:33486394 3'AG 33486394 Downstream 69bp 1988 chr9 135863848 135863848 1 + G T rs527297896 135863848 + 135863828 135863868 41 TGCGTACCACTGTGTGAAGTGCAACAAGGTGGGCAGCGGGG TGCGTACCACTGTGTGAAGTTCAACAAGGTGGGCAGCGGGG Direct Loss 0.962104716432524 0 NA NA prediction 0.924209432865049 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135863848 chr9:135863848 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_2028 0 0 0 0 1 GFI1B chr9:135863855 5'GT 135863855 Upstream 8bp 1989 chr18 163432 163432 1 + G A UCEC 163432 + 163412 163452 41 CCTGCCAGACAGAAAGTTATGGTGAAAGGAGGAACGCTAAA CCTGCCAGACAGAAAGTTATAGTGAAAGGAGGAACGCTAAA Direct Loss 0.962075281146479 0 NA NA prediction 0.924150562292958 Functional Loss - USP14 ENSG00000101557 CDS Human protein_coding chr18:163432 chr18:163432 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2029 0 0 1 0 1 USP14 chr18:163453 5'GT 163453 Upstream 22bp 1990 chr2 31489099 31489099 1 + G T STAD 31489099 + 31489079 31489119 41 CCGCTGAAGAGCAAGCTGCTGGAGGTAGTGGACGACATGCT CCGCTGAAGAGCAAGCTGCTTGAGGTAGTGGACGACATGCT Direct Loss 0.962042760710433 0 NA NA prediction 0.924085521420867 Functional Loss - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489099 chr2:31489099 synonymous SNV . 0 21 hm7G_associated_SNPs_2032 0 0 0 0 1 EHD3 chr2:31489043 3'AG 31489043 Downstream 57bp 1991 chr19 48833607 48833607 1 + G A COAD 48833607 + 48833587 48833627 41 TATGCCATTCACGCCGAGGAGATCCTGGAGAAGCACCCGCG TATGCCATTCACGCCGAGGAAATCCTGGAGAAGCACCCGCG Direct Loss 0.962027816673299 0 NA NA prediction 0.924055633346599 Functional Loss - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48833607 chr19:48833607 nonsynonymous SNV 0.970 0 21 hm7G_associated_SNPs_2034 0 0 1 0 1 EMP3 chr19:48833558 3'AG 48833558 Downstream 50bp 1992 chr6 16247183 16247183 1 + G A BLCA 16247183 + 16247163 16247203 41 ACGTTTGAGATGGCAGCCGTGATGTCACAGGTGAGGCGGTA ACGTTTGAGATGGCAGCCGTAATGTCACAGGTGAGGCGGTA Direct Loss 0.962004567280609 0 NA NA prediction 0.924009134561219 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16247183 chr6:16247183 synonymous SNV . 0 21 hm7G_associated_SNPs_2035 0 0 0 0 1 GMPR chr6:16247192 5'GT 16247192 Upstream 10bp 1993 chr3 121647331 121647331 1 + G A HNSC 121647331 + 121647311 121647351 41 AAGTCTTGAATCTGGCAGATGATGAGGTGAAGGTGACAGTG AAGTCTTGAATCTGGCAGATAATGAGGTGAAGGTGACAGTG Direct Loss 0.961994930120605 0 NA NA prediction 0.92398986024121 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121647331 chr3:121647331 nonsynonymous SNV 0.841 0 21 hm7G_associated_SNPs_2036 0 0 0 0 2 SLC15A2 chr3:121647268 3'AG 121647268 Downstream 64bp 1994 chr3 121647331 121647331 1 + G A HNSC 121647331 + 121647311 121647351 41 AAGTCTTGAATCTGGCAGATGATGAGGTGAAGGTGACAGTG AAGTCTTGAATCTGGCAGATAATGAGGTGAAGGTGACAGTG Direct Loss 0.961994930120605 0 NA NA prediction 0.92398986024121 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121647331 chr3:121647331 nonsynonymous SNV 0.841 0 21 hm7G_associated_SNPs_2036 0 0 0 0 2 SLC15A2 chr3:121647402 5'GT 121647402 Upstream 72bp 1995 chr4 166418700 166418700 1 + G T UCEC 166418700 + 166418680 166418720 41 AGTCATTTTCTGAAAGGAAAGAAGAGGAGAAGGAAGAATTG AGTCATTTTCTGAAAGGAAATAAGAGGAGAAGGAAGAATTG Direct Loss 0.961993893423498 0 NA NA prediction 0.923987786846996 Functional Loss - CPE ENSG00000109472 CDS Human protein_coding chr4:166418700 chr4:166418700 stopgain 0.979 1 21 hm7G_associated_SNPs_2037 0 0 1 0 1 CPE chr4:166418664 3'AG 166418664 Downstream 37bp 1996 chr22 19748729 19748729 1 + G T COAD 19748729 + 19748709 19748749 41 AAGGTGGCCGGTGTGAGCGTGCAGCTAGAGATGAAGGCGCT AAGGTGGCCGGTGTGAGCGTTCAGCTAGAGATGAAGGCGCT Direct Loss 0.96199111540819 0 NA NA prediction 0.923982230816379 Functional Loss - TBX1 ENSG00000184058 CDS Human protein_coding chr22:19748729 chr22:19748729 synonymous SNV . 0 21 hm7G_associated_SNPs_2038 0 0 1 0 1 TBX1 chr22:19748803 5'GT 19748803 Upstream 75bp 1997 chr1 154296762 154296762 1 + G A LUAD 154296762 + 154296742 154296782 41 TGTCCTTCTTTTGCAGTGCTGGTAATGGCTGGTGGTGGGTG TGTCCTTCTTTTGCAGTGCTAGTAATGGCTGGTGGTGGGTG Direct Loss 0.961973036016012 0 NA NA prediction 0.923946072032023 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296762 chr1:154296762 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2040 0 0 1 0 1 AQP10 chr1:154296758 3'AG 154296758 Downstream 5bp 1998 chr16 21261062 21261062 1 + G A SKCM 21261062 + 21261042 21261082 41 TCTCTTCTAGAGGGGACCCTGATAGGTGTGACATCTGGGGA TCTCTTCTAGAGGGGACCCTAATAGGTGTGACATCTGGGGA Direct Loss 0.96193728195874 0 NA NA prediction 0.923874563917479 Functional Loss - ANKS4B ENSG00000175311 CDS Human protein_coding chr16:21261062 chr16:21261062 nonsynonymous SNV 0.953 0 21 hm7G_associated_SNPs_2041 0 0 0 0 1 ANKS4B chr16:21261052 3'AG 21261052 Downstream 11bp 1999 chr5 50687144 50687144 1 + G T HNSC 50687144 + 50687124 50687164 41 CAGGAACTCCCATGGTGGCTGCCAGTCCAGAGAGACACGAC CAGGAACTCCCATGGTGGCTTCCAGTCCAGAGAGACACGAC Direct Loss 0.961928095669102 0 NA NA prediction 0.923856191338203 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50687144 chr5:50687144 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2042 0 0 0 0 1 ISL1 chr5:50687108 3'AG 50687108 Downstream 37bp 2000 chr20 4680122 4680122 1 + G A SKCM 4680122 + 4680102 4680142 41 GTGGCTGGGGACAGCCTCATGGTGGTGGCTGGGGTCAAGGA GTGGCTGGGGACAGCCTCATAGTGGTGGCTGGGGTCAAGGA Direct Loss 0.961925388356494 0 NA NA prediction 0.923850776712988 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680122 chr20:4680122 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_2043 0 0 1 0 1 PRNP chr20:4680125 5'GT 4680125 Upstream 4bp 2001 chr9 90342604 90342604 1 + G A UCEC 90342604 + 90342584 90342624 41 TCACAGTTTAGAGGCACAGTGGACCAAGTGGAAGGCGATGC TCACAGTTTAGAGGCACAGTAGACCAAGTGGAAGGCGATGC Direct Loss 0.961922415989826 0 NA NA prediction 0.923844831979653 Functional Loss - CTSL ENSG00000135047 CDS Human protein_coding chr9:90342604 chr9:90342604 stopgain 0.008 1 21 hm7G_associated_SNPs_2044 0 0 1 0 2 CTSL chr9:90342509 3'AG 90342509 Downstream 96bp 2002 chr9 90342604 90342604 1 + G A UCEC 90342604 + 90342584 90342624 41 TCACAGTTTAGAGGCACAGTGGACCAAGTGGAAGGCGATGC TCACAGTTTAGAGGCACAGTAGACCAAGTGGAAGGCGATGC Direct Loss 0.961922415989826 0 NA NA prediction 0.923844831979653 Functional Loss - CTSL ENSG00000135047 CDS Human protein_coding chr9:90342604 chr9:90342604 stopgain 0.008 1 21 hm7G_associated_SNPs_2044 0 0 1 0 2 CTSL chr9:90342644 5'GT 90342644 Upstream 41bp 2003 chr5 125801134 125801134 1 + G A OV 125801134 + 125801114 125801154 41 TCAGCTCAGAGGCTGAGAATGGTGTGGAGGAGAAAAAGAAA TCAGCTCAGAGGCTGAGAATAGTGTGGAGGAGAAAAAGAAA Direct Loss 0.961892593121193 0 NA NA prediction 0.923785186242385 Functional Loss - GRAMD2B ENSG00000155324 CDS Human antisense chr5:125801134 chr5:125801134 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2046 0 0 0 0 2 GRAMD2B chr5:125801069 3'AG 125801069 Downstream 66bp 2004 chr5 125801134 125801134 1 + G A OV 125801134 + 125801114 125801154 41 TCAGCTCAGAGGCTGAGAATGGTGTGGAGGAGAAAAAGAAA TCAGCTCAGAGGCTGAGAATAGTGTGGAGGAGAAAAAGAAA Direct Loss 0.961892593121193 0 NA NA prediction 0.923785186242385 Functional Loss - GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125801134 chr5:125801134 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2046 0 0 0 0 2 GRAMD2B chr5:125801118 3'AG 125801118 Downstream 17bp 2005 chr8 59490703 59490703 1 + G C CESC 59490703 + 59490683 59490723 41 ACTGTGCAGGATGGAGCTCTGATAAAGCGCACAAGGTGCTC ACTGTGCAGGATGGAGCTCTCATAAAGCGCACAAGGTGCTC Direct Loss 0.961891759750245 0 NA NA prediction 0.923783519500491 Functional Loss - SDCBP ENSG00000137575 CDS Human protein_coding chr8:59490703 chr8:59490703 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_2047 0 0 1 0 2 SDCBP chr8:59490607 3'AG 59490607 Downstream 97bp 2006 chr8 59490703 59490703 1 + G C CESC 59490703 + 59490683 59490723 41 ACTGTGCAGGATGGAGCTCTGATAAAGCGCACAAGGTGCTC ACTGTGCAGGATGGAGCTCTCATAAAGCGCACAAGGTGCTC Direct Loss 0.961891759750245 0 NA NA prediction 0.923783519500491 Functional Loss - SDCBP ENSG00000137575 CDS Human protein_coding chr8:59490703 chr8:59490703 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_2047 0 0 1 0 2 SDCBP chr8:59490767 5'GT 59490767 Upstream 65bp 2007 chr17 41154751 41154751 1 + G T UCEC 41154751 + 41154731 41154771 41 AGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGA AGGATGTCTTCAGAGATCCTTCTCTTAAACGCAAGGCCCGA Direct Loss 0.961874360391505 0 NA NA prediction 0.92374872078301 Functional Loss - RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154751 chr17:41154751 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_2048 0 0 1 0 2 RPL27 chr17:41154690 3'AG 41154690 Downstream 62bp 2008 chr17 41154751 41154751 1 + G T UCEC 41154751 + 41154731 41154771 41 AGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGA AGGATGTCTTCAGAGATCCTTCTCTTAAACGCAAGGCCCGA Direct Loss 0.961874360391505 0 NA NA prediction 0.92374872078301 Functional Loss - RPL27 ENSG00000131469 CDS Human protein_coding chr17:41154751 chr17:41154751 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_2048 0 0 1 0 2 RPL27 chr17:41154800 5'GT 41154800 Upstream 50bp 2009 chr19 54621686 54621686 1 + G A LUSC 54621686 + 54621666 54621706 41 TGGCAGATGAGCTCTTAGCTGATCTCGAAGAGGCAGCAGAA TGGCAGATGAGCTCTTAGCTAATCTCGAAGAGGCAGCAGAA Direct Loss 0.961811995659095 0 NA NA prediction 0.923623991318191 Functional Loss - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54621686 chr19:54621686 nonsynonymous SNV 0.994 5 21 hm7G_associated_SNPs_2051 0 0 1 0 1 PRPF31 chr19:54621651 3'AG 54621651 Downstream 36bp 2010 chr11 58379117 58379117 1 + G C BLCA 58379117 + 58379097 58379137 41 GAAAATCAGGGAAGGTAAAAGAAGAGAAGGAGAAGAAGGAA GAAAATCAGGGAAGGTAAAACAAGAGAAGGAGAAGAAGGAA Direct Loss 0.961809402417119 0 NA NA prediction 0.923618804834239 Functional Loss - ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379117 chr11:58379117 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2052 0 0 1 0 2 ZFP91 chr11:58379077 3'AG 58379077 Downstream 41bp 2011 chr11 58379117 58379117 1 + G C BLCA 58379117 + 58379097 58379137 41 GAAAATCAGGGAAGGTAAAAGAAGAGAAGGAGAAGAAGGAA GAAAATCAGGGAAGGTAAAACAAGAGAAGGAGAAGAAGGAA Direct Loss 0.961809402417119 0 NA NA prediction 0.923618804834239 Functional Loss - ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379117 chr11:58379117 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2052 0 0 1 0 2 ZFP91 chr11:58379211 5'GT 58379211 Upstream 95bp 2012 chr5 132440003 132440003 1 + G A UCEC 132440003 + 132439983 132440023 41 CAAAAGAGGAACAAAAAAATGCAGAGCAGAATGGACCAGTG CAAAAGAGGAACAAAAAAATACAGAGCAGAATGGACCAGTG Direct Loss 0.961809106933761 0 NA NA prediction 0.923618213867522 Functional Loss - HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132440003 chr5:132440003 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_2053 0 0 1 0 1 HSPA4 chr5:132439925 3'AG 132439925 Downstream 79bp 2013 chr2 191231492 191231492 1 + G T STAD 191231492 + 191231472 191231512 41 TTCTTAGCAAAGTCCTCAATGGTAACAAGGTGGCATCTGAA TTCTTAGCAAAGTCCTCAATTGTAACAAGGTGGCATCTGAA Direct Loss 0.961725359921974 0 NA NA prediction 0.923450719843947 Functional Loss - INPP1 ENSG00000151689 CDS Human protein_coding chr2:191231492 chr2:191231492 nonsynonymous SNV 0.980 3 21 hm7G_associated_SNPs_2055 0 0 0 0 1 INPP1 chr2:191231421 3'AG 191231421 Downstream 72bp 2014 chr11 65113198 65113198 1 + G A KIRP 65113198 + 65113178 65113218 41 CACTATGCCCACTCCCACTTGGCTGAGGAGGAGGGCGAGGA CACTATGCCCACTCCCACTTAGCTGAGGAGGAGGGCGAGGA Direct Loss 0.961717990690529 0 NA NA prediction 0.923435981381058 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113198 chr11:65113198 synonymous SNV . 0 21 hm7G_associated_SNPs_2057 0 0 1 0 2 DPF2 chr11:65113137 3'AG 65113137 Downstream 62bp 2015 chr11 65113198 65113198 1 + G A KIRP 65113198 + 65113178 65113218 41 CACTATGCCCACTCCCACTTGGCTGAGGAGGAGGGCGAGGA CACTATGCCCACTCCCACTTAGCTGAGGAGGAGGGCGAGGA Direct Loss 0.961717990690529 0 NA NA prediction 0.923435981381058 Functional Loss - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113198 chr11:65113198 synonymous SNV . 0 21 hm7G_associated_SNPs_2057 0 0 1 0 2 DPF2 chr11:65113274 5'GT 65113274 Upstream 77bp 2016 chr8 145151144 145151144 1 + G C rs35973351 145151144 + 145151124 145151164 41 GAGGATGAAGCTAAGGAGCTGGCTGCGGAGGTGTGGGGTCT GAGGATGAAGCTAAGGAGCTCGCTGCGGAGGTGTGGGGTCT Direct Loss 0.961717284986478 0 NA NA prediction 0.923434569972956 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151144 chr8:145151144 synonymous SNV . 0 21 hm7G_associated_SNPs_2058 1 0 1 0 1 CYC1 chr8:145151153 5'GT 145151153 Upstream 10bp 2017 chr6 150464597 150464597 1 + G A SKCM 150464597 + 150464577 150464617 41 GCGGCTGGTGCTGGAGGAATGGATCGTGGAGCAGCTGGGTC GCGGCTGGTGCTGGAGGAATAGATCGTGGAGCAGCTGGGTC Direct Loss 0.961700481311807 0 NA NA prediction 0.923400962623615 Functional Loss - PPP1R14C ENSG00000198729 CDS Human protein_coding chr6:150464597 chr6:150464597 stopgain 0.999 1 21 hm7G_associated_SNPs_2059 0 0 1 0 1 PPP1R14C chr6:150464634 5'GT 150464634 Upstream 38bp 2018 chr3 52023001 52023001 1 + G A UCEC 52023001 + 52022981 52023021 41 CACGACCACGATGAACGGCTGCATGAGGCTGTGTTCCTCCG CACGACCACGATGAACGGCTACATGAGGCTGTGTTCCTCCG Direct Loss 0.961695322431052 0 NA NA prediction 0.923390644862104 Functional Loss - ABHD14A-ACY1;ACY1 ENSG00000114786;ENSG00000243989 CDS Human other chr3:52023001 chr3:52023001 synonymous SNV . 0 21 hm7G_associated_SNPs_2060 0 0 1 0 1 ABHD14A-ACY1;ACY1 chr3:52022927 3'AG 52022927 Downstream 75bp 2019 chr11 63276452 63276452 1 + G A HNSC 63276452 + 63276432 63276472 41 TCCTCTTTCTCTTCGGGAATGAGGAAGTGAAGGTGAAGGAA TCCTCTTTCTCTTCGGGAATAAGGAAGTGAAGGTGAAGGAA Direct Loss 0.961659043435608 0 NA NA prediction 0.923318086871216 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276452 chr11:63276452 nonsynonymous SNV 0.785 3 21 hm7G_associated_SNPs_2061 0 0 0 0 1 LGALS12 chr11:63276463 5'GT 63276463 Upstream 12bp 2020 chr10 114181785 114181785 1 + G A SKCM 114181785 + 114181765 114181805 41 ACTACTTTACAGTGAATAATGAAGGAGAGGTGGGTAGGTCA ACTACTTTACAGTGAATAATAAAGGAGAGGTGGGTAGGTCA Direct Loss 0.961612083786032 0 NA NA prediction 0.923224167572064 Functional Loss - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114181785 chr10:114181785 nonsynonymous SNV 0.955 2 21 hm7G_associated_SNPs_2062 0 0 1 0 2 ACSL5 chr10:114181705 3'AG 114181705 Downstream 81bp 2021 chr10 114181785 114181785 1 + G A SKCM 114181785 + 114181765 114181805 41 ACTACTTTACAGTGAATAATGAAGGAGAGGTGGGTAGGTCA ACTACTTTACAGTGAATAATAAAGGAGAGGTGGGTAGGTCA Direct Loss 0.961612083786032 0 NA NA prediction 0.923224167572064 Functional Loss - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114181785 chr10:114181785 nonsynonymous SNV 0.955 2 21 hm7G_associated_SNPs_2062 0 0 1 0 2 ACSL5 chr10:114181793 5'GT 114181793 Upstream 9bp 2022 chr12 6645907 6645907 1 + G A LUSC 6645907 + 6645887 6645927 41 TCCATGGCACCGTCAAGGCTGAGAACGGGAAGCTTGTCATC TCCATGGCACCGTCAAGGCTAAGAACGGGAAGCTTGTCATC Direct Loss 0.961609538401919 0 NA NA prediction 0.923219076803837 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6645907 chr12:6645907 nonsynonymous SNV 0.985 1 21 hm7G_associated_SNPs_2063 0 0 1 0 2 GAPDH chr12:6645850 3'AG 6645850 Downstream 58bp 2023 chr12 6645907 6645907 1 + G A LUSC 6645907 + 6645887 6645927 41 TCCATGGCACCGTCAAGGCTGAGAACGGGAAGCTTGTCATC TCCATGGCACCGTCAAGGCTAAGAACGGGAAGCTTGTCATC Direct Loss 0.961609538401919 0 NA NA prediction 0.923219076803837 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6645907 chr12:6645907 nonsynonymous SNV 0.985 1 21 hm7G_associated_SNPs_2063 0 0 1 0 2 GAPDH chr12:6645956 5'GT 6645956 Upstream 50bp 2024 chr15 34517759 34517759 1 + G T STAD 34517759 + 34517739 34517779 41 GTCGAAGTGACCGGGGCAGTGGCCAGGGAGACTCGCTCTAC GTCGAAGTGACCGGGGCAGTTGCCAGGGAGACTCGCTCTAC Direct Loss 0.961605212729196 0 NA NA prediction 0.923210425458391 Functional Loss - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517759 chr15:34517759 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2064 0 0 1 1 2 EMC4 chr15:34517737 3'AG 34517737 Downstream 23bp 2025 chr15 34517759 34517759 1 + G T STAD 34517759 + 34517739 34517779 41 GTCGAAGTGACCGGGGCAGTGGCCAGGGAGACTCGCTCTAC GTCGAAGTGACCGGGGCAGTTGCCAGGGAGACTCGCTCTAC Direct Loss 0.961605212729196 0 NA NA prediction 0.923210425458391 Functional Loss - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517759 chr15:34517759 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2064 0 0 1 1 2 EMC4 chr15:34517851 5'GT 34517851 Upstream 93bp 2026 chr19 36363479 36363479 1 + G A SKCM 36363479 + 36363459 36363499 41 GGGTTCCTGAGGGCCAAGATGGACCTGGAGGAGCGTAGGAT GGGTTCCTGAGGGCCAAGATAGACCTGGAGGAGCGTAGGAT Direct Loss 0.961601918877582 0 NA NA prediction 0.923203837755164 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36363479 chr19:36363479 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2065 0 0 0 0 2 APLP1 chr19:36363385 3'AG 36363385 Downstream 95bp 2027 chr19 36363479 36363479 1 + G A SKCM 36363479 + 36363459 36363499 41 GGGTTCCTGAGGGCCAAGATGGACCTGGAGGAGCGTAGGAT GGGTTCCTGAGGGCCAAGATAGACCTGGAGGAGCGTAGGAT Direct Loss 0.961601918877582 0 NA NA prediction 0.923203837755164 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36363479 chr19:36363479 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2065 0 0 0 0 2 APLP1 chr19:36363515 5'GT 36363515 Upstream 37bp 2028 chr22 50927873 50927873 1 + G A BLCA 50927873 + 50927853 50927893 41 ACAAGTTCTCACTGCCCCCTGAGGTAGGTGGGGGGAGGGGC ACAAGTTCTCACTGCCCCCTAAGGTAGGTGGGGGGAGGGGC Direct Loss 0.961597595078798 0 NA NA prediction 0.923195190157595 Functional Loss - MIOX ENSG00000100253 CDS Human protein_coding chr22:50927873 chr22:50927873 nonsynonymous SNV 0.604 1 21 hm7G_associated_SNPs_2067 0 0 0 0 1 MIOX chr22:50927875 5'GT 50927875 Upstream 3bp 2029 chr2 27522159 27522159 1 + G A LUAD 27522159 + 27522139 27522179 41 ACCTCATGTGCGAGGAGCATGAAGAAGAGAAGATCAATATT ACCTCATGTGCGAGGAGCATAAAGAAGAGAAGATCAATATT Direct Loss 0.961585093763126 0 NA NA prediction 0.923170187526252 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27522159 chr2:27522159 nonsynonymous SNV 0.800 1 21 hm7G_associated_SNPs_2068 0 0 0 0 1 TRIM54 chr2:27522113 3'AG 27522113 Downstream 47bp 2030 chr21 46380037 46380037 1 + G A rs554932563 46380037 + 46380017 46380057 41 GCAGAGGCCAAGACCGTTTTGCCCAAGAAGGAGAAAATGAA GCAGAGGCCAAGACCGTTTTACCCAAGAAGGAGAAAATGAA Direct Loss 0.961580648741794 0 NA NA prediction 0.923161297483589 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46380037 chr21:46380037 synonymous SNV . 0 21 hm7G_associated_SNPs_2069 0 0 0 0 1 FAM207A chr21:46380015 3'AG 46380015 Downstream 23bp 2031 chr2 233546356 233546356 1 + G A UCEC 233546356 + 233546336 233546376 41 GAAAGCTGAGCAAGATGAGCGGAAGCGGGAGGAGGAGGAGA GAAAGCTGAGCAAGATGAGCAGAAGCGGGAGGAGGAGGAGA Direct Loss 0.96157657226662 0 NA NA prediction 0.92315314453324 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233546356 chr2:233546356 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_2071 0 0 0 0 1 EFHD1 chr2:233546295 3'AG 233546295 Downstream 62bp 2032 chr17 37358661 37358661 1 + G A UCEC 37358661 + 37358641 37358681 41 CGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCA CGATGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCA Direct Loss 0.96157088762365 0 NA NA prediction 0.923141775247299 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358661 chr17:37358661 synonymous SNV . 0 21 hm7G_associated_SNPs_2072 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 92bp 2033 chr17 37358661 37358661 1 + G A UCEC 37358661 + 37358641 37358681 41 CGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCA CGATGCCGGAAAAACACCTTAGCCCGCCGGAAGGGCAGGCA Direct Loss 0.96157088762365 0 NA NA prediction 0.923141775247299 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358661 chr17:37358661 synonymous SNV . 0 21 hm7G_associated_SNPs_2072 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 32bp 2034 chr1 220978449 220978449 1 + G T HNSC 220978449 + 220978429 220978469 41 ACTGAAAAGGGTGATGGCTTGTTCCAGGTAAGGTGCTTTCC ACTGAAAAGGGTGATGGCTTTTTCCAGGTAAGGTGCTTTCC Direct Loss 0.961562481371527 0 NA NA prediction 0.923124962743054 Functional Loss - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220978449 chr1:220978449 nonsynonymous SNV 0.989 3 21 hm7G_associated_SNPs_2073 0 0 1 0 2 MARC1 chr1:220978394 3'AG 220978394 Downstream 56bp 2035 chr1 220978449 220978449 1 + G T HNSC 220978449 + 220978429 220978469 41 ACTGAAAAGGGTGATGGCTTGTTCCAGGTAAGGTGCTTTCC ACTGAAAAGGGTGATGGCTTTTTCCAGGTAAGGTGCTTTCC Direct Loss 0.961562481371527 0 NA NA prediction 0.923124962743054 Functional Loss - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220978449 chr1:220978449 nonsynonymous SNV 0.989 3 21 hm7G_associated_SNPs_2073 0 0 1 0 2 MARC1 chr1:220978455 5'GT 220978455 Upstream 7bp 2036 chr1 38166136 38166136 1 + G T OV 38166136 + 38166116 38166156 41 GTAATACAGGTAGATGAAATGATAGTGGAAGAGGAAGAAGA GTAATACAGGTAGATGAAATTATAGTGGAAGAGGAAGAAGA Direct Loss 0.961560026056951 0 NA NA prediction 0.923120052113902 Functional Loss - CDCA8 ENSG00000134690 CDS Human protein_coding chr1:38166136 chr1:38166136 nonsynonymous SNV 0.981 0 21 hm7G_associated_SNPs_2074 0 0 1 0 1 CDCA8 chr1:38166108 3'AG 38166108 Downstream 29bp 2037 chr16 31500473 31500473 1 + G A rs568091500 31500473 + 31500453 31500493 41 TGGGGACTCATCGGGGGCCTGCTGATGGGCCTGGCACGCCT TGGGGACTCATCGGGGGCCTACTGATGGGCCTGGCACGCCT Direct Loss 0.961551705876309 0 NA NA prediction 0.923103411752619 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500473 chr16:31500473 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_2075 0 0 0 1 1 SLC5A2 chr16:31500444 3'AG 31500444 Downstream 30bp 2038 chr2 106694266 106694266 1 + G T OV 106694266 + 106694246 106694286 41 GGCTTAACAGAGATCGAAATGGACATGAATACTATGGCGAT GGCTTAACAGAGATCGAAATTGACATGAATACTATGGCGAT Direct Loss 0.961471048529007 0 NA NA prediction 0.922942097058013 Functional Loss - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106694266 chr2:106694266 stopgain 0.897 1 21 hm7G_associated_SNPs_2078 0 0 0 0 1 C2orf40 chr2:106694221 3'AG 106694221 Downstream 46bp 2039 chr4 17524572 17524572 1 + G T ACC 17524572 + 17524552 17524592 41 CTGGCCTTGGCCCTGGCTCTGGTCAGCATGGGCTTTGCCAT CTGGCCTTGGCCCTGGCTCTTGTCAGCATGGGCTTTGCCAT Direct Loss 0.961456955921381 0 NA NA prediction 0.922913911842763 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524572 chr4:17524572 synonymous SNV . 0 21 hm7G_associated_SNPs_2079 0 0 0 0 2 CLRN2 chr4:17524487 3'AG 17524487 Downstream 86bp 2040 chr4 17524572 17524572 1 + G T ACC 17524572 + 17524552 17524592 41 CTGGCCTTGGCCCTGGCTCTGGTCAGCATGGGCTTTGCCAT CTGGCCTTGGCCCTGGCTCTTGTCAGCATGGGCTTTGCCAT Direct Loss 0.961456955921381 0 NA NA prediction 0.922913911842763 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524572 chr4:17524572 synonymous SNV . 0 21 hm7G_associated_SNPs_2079 0 0 0 0 2 CLRN2 chr4:17524666 5'GT 17524666 Upstream 95bp 2041 chr6 37138592 37138592 1 + G A DLBC 37138592 + 37138572 37138612 41 TCGCAGTACCAGGTGGGCCCGCTACTGGGCAGCGGCGGCTT TCGCAGTACCAGGTGGGCCCACTACTGGGCAGCGGCGGCTT Direct Loss 0.961431553880422 0 NA NA prediction 0.922863107760844 Functional Loss - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138592 chr6:37138592 synonymous SNV . 0 21 hm7G_associated_SNPs_2080 0 0 1 0 2 PIM1 chr6:37138549 3'AG 37138549 Downstream 44bp 2042 chr6 37138592 37138592 1 + G A DLBC 37138592 + 37138572 37138612 41 TCGCAGTACCAGGTGGGCCCGCTACTGGGCAGCGGCGGCTT TCGCAGTACCAGGTGGGCCCACTACTGGGCAGCGGCGGCTT Direct Loss 0.961431553880422 0 NA NA prediction 0.922863107760844 Functional Loss - PIM1 ENSG00000137193 CDS Human protein_coding chr6:37138592 chr6:37138592 synonymous SNV . 0 21 hm7G_associated_SNPs_2080 0 0 1 0 2 PIM1 chr6:37138655 5'GT 37138655 Upstream 64bp 2043 chr5 137271509 137271509 1 + G A HNSC 137271509 + 137271489 137271529 41 ATTCAAAACGCAGAGCAGATGAAAAAATGGAAAGAGAGGCT ATTCAAAACGCAGAGCAGATAAAAAAATGGAAAGAGAGGCT Direct Loss 0.961419730754598 0 NA NA prediction 0.922839461509196 Functional Loss - PKD2L2 ENSG00000078795 CDS Human protein_coding chr5:137271509 chr5:137271509 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2081 0 0 0 0 1 PKD2L2 chr5:137271486 3'AG 137271486 Downstream 24bp 2044 chr20 126110 126110 1 + G A LGG 126110 + 126090 126130 41 TGGAATTTGCAAGAAGAAGTGCAAACCTGAAGAGATGCATG TGGAATTTGCAAGAAGAAGTACAAACCTGAAGAGATGCATG Direct Loss 0.961401714260209 0 NA NA prediction 0.922803428520419 Functional Loss - DEFB126 ENSG00000125788 CDS Human protein_coding chr20:126110 chr20:126110 nonsynonymous SNV 0.025 5 21 hm7G_associated_SNPs_2082 0 0 0 0 1 DEFB126 chr20:126056 3'AG 126056 Downstream 55bp 2045 chr6 33382131 33382131 1 + G T SARC 33382131 + 33382111 33382151 41 TCTGAGAATTGGGACAGTTTGCTCCTGGGGGAGGTAAGGGG TCTGAGAATTGGGACAGTTTTCTCCTGGGGGAGGTAAGGGG Direct Loss 0.961382709237175 0 NA NA prediction 0.922765418474349 Functional Loss - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33382131 chr6:33382131 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_2084 0 0 1 0 1 PHF1 chr6:33382143 5'GT 33382143 Upstream 13bp 2046 chr12 6575146 6575146 1 - C G BLCA 6575146 - 6575126 6575166 41 GTGGTGGACATCATACGTGTGAACGTGGACAAGGTCCTGGA GTGGTGGACATCATACGTGTCAACGTGGACAAGGTCCTGGA Direct Loss 0.961378760651931 0 NA NA prediction 0.922757521303861 Functional Loss - VAMP1 ENSG00000139190 CDS Human protein_coding chr12:6575146 chr12:6575146 synonymous SNV . 0 21 hm7G_associated_SNPs_2085 0 0 1 0 1 VAMP1 chr12:6575166 3'AG 6575166 Downstream 21bp 2047 chr1 153631943 153631943 1 + G A rs8532 153631943 + 153631923 153631963 41 GAACTGTGCCGCATAAATGAGGATCAGAAGGTGGCCCTGGA GAACTGTGCCGCATAAATGAAGATCAGAAGGTGGCCCTGGA Direct Loss 0.961378408572539 0 NA NA prediction 0.922756817145078 Functional Loss - SNAPIN ENSG00000143553 CDS Human protein_coding chr1:153631943 chr1:153631943 synonymous SNV . 0 21 hm7G_associated_SNPs_2086 0 0 1 0 2 SNAPIN chr1:153631924 3'AG 153631924 Downstream 20bp 2048 chr1 153631943 153631943 1 + G A rs8532 153631943 + 153631923 153631963 41 GAACTGTGCCGCATAAATGAGGATCAGAAGGTGGCCCTGGA GAACTGTGCCGCATAAATGAAGATCAGAAGGTGGCCCTGGA Direct Loss 0.961378408572539 0 NA NA prediction 0.922756817145078 Functional Loss - SNAPIN ENSG00000143553 CDS Human protein_coding chr1:153631943 chr1:153631943 synonymous SNV . 0 21 hm7G_associated_SNPs_2086 0 0 1 0 2 SNAPIN chr1:153632042 5'GT 153632042 Upstream 100bp 2049 chr19 56180472 56180472 1 + G A SARC 56180472 + 56180452 56180492 41 ATTGCGGGGCTGAACGGCATGCAGCTGGGGGATAAGAAGCT ATTGCGGGGCTGAACGGCATACAGCTGGGGGATAAGAAGCT Direct Loss 0.961377460281354 0 NA NA prediction 0.922754920562708 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56180472 chr19:56180472 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2087 0 0 1 0 2 U2AF2 chr19:56180449 3'AG 56180449 Downstream 24bp 2050 chr19 56180472 56180472 1 + G A SARC 56180472 + 56180452 56180492 41 ATTGCGGGGCTGAACGGCATGCAGCTGGGGGATAAGAAGCT ATTGCGGGGCTGAACGGCATACAGCTGGGGGATAAGAAGCT Direct Loss 0.961377460281354 0 NA NA prediction 0.922754920562708 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56180472 chr19:56180472 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2087 0 0 1 0 2 U2AF2 chr19:56180535 5'GT 56180535 Upstream 64bp 2051 chr1 36552864 36552864 1 + G T HNSC 36552864 + 36552844 36552884 41 TTTGCCTTCAGGAAGCGGCTGCGGGAGATGGAGAAAGTGTA TTTGCCTTCAGGAAGCGGCTTCGGGAGATGGAGAAAGTGTA Direct Loss 0.961365965909306 0 NA NA prediction 0.922731931818611 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552864 chr1:36552864 synonymous SNV . 0 21 hm7G_associated_SNPs_2089 0 0 0 0 2 TEKT2 chr1:36552805 3'AG 36552805 Downstream 60bp 2052 chr1 36552864 36552864 1 + G T HNSC 36552864 + 36552844 36552884 41 TTTGCCTTCAGGAAGCGGCTGCGGGAGATGGAGAAAGTGTA TTTGCCTTCAGGAAGCGGCTTCGGGAGATGGAGAAAGTGTA Direct Loss 0.961365965909306 0 NA NA prediction 0.922731931818611 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552864 chr1:36552864 synonymous SNV . 0 21 hm7G_associated_SNPs_2089 0 0 0 0 2 TEKT2 chr1:36552912 5'GT 36552912 Upstream 49bp 2053 chr3 179294032 179294032 1 + G A BLCA 179294032 + 179294012 179294052 41 AATGGTCGTTCTACTGGGCTGATTTTGGACAGTGGAGCCAC AATGGTCGTTCTACTGGGCTAATTTTGGACAGTGGAGCCAC Direct Loss 0.961340858437699 0 NA NA prediction 0.922681716875399 Functional Loss - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179294032 chr3:179294032 synonymous SNV . 0 21 hm7G_associated_SNPs_2090 0 0 1 0 2 ACTL6A chr3:179294005 3'AG 179294005 Downstream 28bp 2054 chr3 179294032 179294032 1 + G A BLCA 179294032 + 179294012 179294052 41 AATGGTCGTTCTACTGGGCTGATTTTGGACAGTGGAGCCAC AATGGTCGTTCTACTGGGCTAATTTTGGACAGTGGAGCCAC Direct Loss 0.961340858437699 0 NA NA prediction 0.922681716875399 Functional Loss - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179294032 chr3:179294032 synonymous SNV . 0 21 hm7G_associated_SNPs_2090 0 0 1 0 2 ACTL6A chr3:179294099 5'GT 179294099 Upstream 68bp 2055 chr22 27018595 27018595 1 + G A SKCM 27018595 + 27018575 27018615 41 CACAAAGTCAGCGGGACCCTGGAAGGTAGGAAGAGGCATGG CACAAAGTCAGCGGGACCCTAGAAGGTAGGAAGAGGCATGG Direct Loss 0.961339516552408 0 NA NA prediction 0.922679033104816 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27018595 chr22:27018595 stopgain 1.000 1 21 hm7G_associated_SNPs_2091 0 0 0 0 2 CRYBA4 chr22:27018549 3'AG 27018549 Downstream 47bp 2056 chr22 27018595 27018595 1 + G A SKCM 27018595 + 27018575 27018615 41 CACAAAGTCAGCGGGACCCTGGAAGGTAGGAAGAGGCATGG CACAAAGTCAGCGGGACCCTAGAAGGTAGGAAGAGGCATGG Direct Loss 0.961339516552408 0 NA NA prediction 0.922679033104816 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27018595 chr22:27018595 stopgain 1.000 1 21 hm7G_associated_SNPs_2091 0 0 0 0 2 CRYBA4 chr22:27018599 5'GT 27018599 Upstream 5bp 2057 chr2 27907997 27907997 1 + G A LUAD 27907997 + 27907977 27908017 41 AGGAGGAAGAGGAAGAGGAAGAAGAGAAAGAAAAGGAGGAG AGGAGGAAGAGGAAGAGGAAAAAGAGAAAGAAAAGGAGGAG Direct Loss 0.961327846537797 0 NA NA prediction 0.922655693075593 Functional Loss - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27907997 chr2:27907997 nonsynonymous SNV 0.955 0 21 hm7G_associated_SNPs_2092 0 0 0 0 1 SLC4A1AP chr2:27907904 3'AG 27907904 Downstream 94bp 2058 chr17 76166923 76166923 1 + G A UCEC 76166923 + 76166903 76166943 41 CGCCTTGATCGTGTTCTCCTGCATCTATGGTGAGGGCTACA CGCCTTGATCGTGTTCTCCTACATCTATGGTGAGGGCTACA Direct Loss 0.961312457073728 0 NA NA prediction 0.922624914147456 Functional Loss - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76166923 chr17:76166923 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_2093 0 0 1 0 1 SYNGR2 chr17:76166898 3'AG 76166898 Downstream 26bp 2059 chr14 24631404 24631404 1 + G A rs34348617 24631404 + 24631384 24631424 41 AAACTCCGGAACTGGGTGGTGGAGCAAGTGGAGAGTGGGCA AAACTCCGGAACTGGGTGGTAGAGCAAGTGGAGAGTGGGCA Direct Loss 0.961285429531225 0 NA NA prediction 0.92257085906245 Functional Loss - IRF9 ENSG00000213928 CDS Human other chr14:24631404 chr14:24631404 synonymous SNV . 0 21 hm7G_associated_SNPs_2094 0 0 1 0 1 IRF9 chr14:24631353 3'AG 24631353 Downstream 52bp 2060 chr21 41300911 41300911 1 + G A SKCM 41300911 + 41300891 41300931 41 GTGTTTGTCTTGCTACAGATGGACAGAAGAAAGTTCAAGAA GTGTTTGTCTTGCTACAGATAGACAGAAGAAAGTTCAAGAA Direct Loss 0.961279383179913 0 NA NA prediction 0.922558766359826 Functional Loss - PCP4 ENSG00000183036 CDS Human protein_coding chr21:41300911 chr21:41300911 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_2095 0 0 0 0 1 PCP4 chr21:41300909 3'AG 41300909 Downstream 3bp 2061 chr11 6631242 6631242 1 + G C LUAD 6631242 + 6631222 6631262 41 AATGTCCTGGTCGCATGTATGCACCTGCCTGGGTAGCCCCC AATGTCCTGGTCGCATGTATCCACCTGCCTGGGTAGCCCCC Direct Loss 0.9612769346911 0 NA NA prediction 0.9225538693822 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6631242 chr11:6631242 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2096 0 0 1 0 2 ILK chr11:6631167 3'AG 6631167 Downstream 76bp 2062 chr11 6631242 6631242 1 + G C LUAD 6631242 + 6631222 6631262 41 AATGTCCTGGTCGCATGTATGCACCTGCCTGGGTAGCCCCC AATGTCCTGGTCGCATGTATCCACCTGCCTGGGTAGCCCCC Direct Loss 0.9612769346911 0 NA NA prediction 0.9225538693822 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6631242 chr11:6631242 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2096 0 0 1 0 2 ILK chr11:6631266 5'GT 6631266 Upstream 25bp 2063 chr2 85824039 85824039 1 + G A rs1127974 85824039 + 85824019 85824059 41 TTCCATTCCAGCTGCATTCTGCCCTGGCTAAGCAAGGTACT TTCCATTCCAGCTGCATTCTACCCTGGCTAAGCAAGGTACT Direct Loss 0.961252263695287 0 NA NA prediction 0.922504527390574 Functional Loss - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85824039 chr2:85824039 synonymous SNV . 0 21 hm7G_associated_SNPs_2097 0 0 1 0 2 RNF181 chr2:85823945 3'AG 85823945 Downstream 95bp 2064 chr2 85824039 85824039 1 + G A rs1127974 85824039 + 85824019 85824059 41 TTCCATTCCAGCTGCATTCTGCCCTGGCTAAGCAAGGTACT TTCCATTCCAGCTGCATTCTACCCTGGCTAAGCAAGGTACT Direct Loss 0.961252263695287 0 NA NA prediction 0.922504527390574 Functional Loss - RNF181 ENSG00000168894 CDS Human protein_coding chr2:85824039 chr2:85824039 synonymous SNV . 0 21 hm7G_associated_SNPs_2097 0 0 1 0 2 RNF181 chr2:85824054 5'GT 85824054 Upstream 16bp 2065 chr1 226252098 226252098 1 + G T BLCA 226252098 + 226252078 226252118 41 GCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCT GCAAATCGACCGGTGGTAAATCACCCAGGAAGCAACTGGCT Direct Loss 0.961250928145826 0 NA NA prediction 0.922501856291652 Functional Loss - H3F3A ENSG00000163041 CDS Human protein_coding chr1:226252098 chr1:226252098 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2098 0 0 0 0 2 H3F3AP4 chr1:226252030 3'AG 226252030 Downstream 69bp 2066 chr1 226252098 226252098 1 + G T BLCA 226252098 + 226252078 226252118 41 GCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCT GCAAATCGACCGGTGGTAAATCACCCAGGAAGCAACTGGCT Direct Loss 0.961250928145826 0 NA NA prediction 0.922501856291652 Functional Loss - H3F3A ENSG00000163041 CDS Human protein_coding chr1:226252098 chr1:226252098 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2098 0 0 0 0 2 H3F3A chr1:226252180 5'GT 226252180 Upstream 83bp 2067 chr20 42344627 42344627 1 + G T LUAD 42344627 + 42344607 42344647 41 TGCCTGGAAGACGGTGGCCTGCGGGGGGACCAGGGACCAGC TGCCTGGAAGACGGTGGCCTTCGGGGGGACCAGGGACCAGC Direct Loss 0.961240935259312 0 NA NA prediction 0.922481870518624 Functional Loss - MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42344627 chr20:42344627 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2100 0 0 1 0 1 MYBL2 chr20:42344599 3'AG 42344599 Downstream 29bp 2068 chr16 2489814 2489814 1 + G T SARC 2489814 + 2489794 2489834 41 GGACTACGCTGCCAAAGGCTGCTGGGAAGCGCAGGTGAGGT GGACTACGCTGCCAAAGGCTTCTGGGAAGCGCAGGTGAGGT Direct Loss 0.961238139229441 0 NA NA prediction 0.922476278458882 Functional Loss - CCNF ENSG00000162063 CDS Human protein_coding chr16:2489814 chr16:2489814 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2101 0 0 1 0 2 CCNF chr16:2489750 3'AG 2489750 Downstream 65bp 2069 chr16 2489814 2489814 1 + G T SARC 2489814 + 2489794 2489834 41 GGACTACGCTGCCAAAGGCTGCTGGGAAGCGCAGGTGAGGT GGACTACGCTGCCAAAGGCTTCTGGGAAGCGCAGGTGAGGT Direct Loss 0.961238139229441 0 NA NA prediction 0.922476278458882 Functional Loss - CCNF ENSG00000162063 CDS Human protein_coding chr16:2489814 chr16:2489814 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2101 0 0 1 0 2 CCNF chr16:2489827 5'GT 2489827 Upstream 14bp 2070 chr5 172395551 172395551 1 + G T UCEC 172395551 + 172395531 172395571 41 ATCTACATCGAGCGGGTGCAGCGTGAGAAGGCCAACGGCAC ATCTACATCGAGCGGGTGCATCGTGAGAAGGCCAACGGCAC Direct Loss 0.961210638809133 0 NA NA prediction 0.922421277618266 Functional Loss - RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172395551 chr5:172395551 nonsynonymous SNV 0.979 0 21 hm7G_associated_SNPs_2102 0 0 1 0 2 RPL26L1 chr5:172395462 3'AG 172395462 Downstream 90bp 2071 chr5 172395551 172395551 1 + G T UCEC 172395551 + 172395531 172395571 41 ATCTACATCGAGCGGGTGCAGCGTGAGAAGGCCAACGGCAC ATCTACATCGAGCGGGTGCATCGTGAGAAGGCCAACGGCAC Direct Loss 0.961210638809133 0 NA NA prediction 0.922421277618266 Functional Loss - RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172395551 chr5:172395551 nonsynonymous SNV 0.979 0 21 hm7G_associated_SNPs_2102 0 0 1 0 2 RPL26L1 chr5:172395602 5'GT 172395602 Upstream 52bp 2072 chr3 197562589 197562589 1 + G A STAD 197562589 + 197562569 197562609 41 ACTACATAGACAGCTGCACCGCAGAGGAAGAGGAGGCCGAG ACTACATAGACAGCTGCACCACAGAGGAAGAGGAGGCCGAG Direct Loss 0.961206992207506 0 NA NA prediction 0.922413984415012 Functional Loss - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197562589 chr3:197562589 nonsynonymous SNV 0.409 0 21 hm7G_associated_SNPs_2103 0 0 1 0 2 LRCH3 chr3:197562545 3'AG 197562545 Downstream 45bp 2073 chr3 197562589 197562589 1 + G A STAD 197562589 + 197562569 197562609 41 ACTACATAGACAGCTGCACCGCAGAGGAAGAGGAGGCCGAG ACTACATAGACAGCTGCACCACAGAGGAAGAGGAGGCCGAG Direct Loss 0.961206992207506 0 NA NA prediction 0.922413984415012 Functional Loss - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197562589 chr3:197562589 nonsynonymous SNV 0.409 0 21 hm7G_associated_SNPs_2103 0 0 1 0 2 LRCH3 chr3:197562609 5'GT 197562609 Upstream 21bp 2074 chr9 2186186 2186186 1 + G A HNSC 2186186 + 2186166 2186206 41 AGAGTGAGGATGAAAGCAATGAAGAGGAGGAAGAGGAAGAT AGAGTGAGGATGAAAGCAATAAAGAGGAGGAAGAGGAAGAT Direct Loss 0.961147591970693 0 NA NA prediction 0.922295183941387 Functional Loss - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2186186 chr9:2186186 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_2105 0 0 1 0 1 SMARCA2 chr9:2186096 3'AG 2186096 Downstream 91bp 2075 chr7 2632707 2632707 1 + G A rs199837712 2632707 + 2632687 2632727 41 GCCGACCTGGAGAAGGAGCTGGAGTGCGCGAGGGAGGGCGA GCCGACCTGGAGAAGGAGCTAGAGTGCGCGAGGGAGGGCGA Direct Loss 0.961146620886027 0 NA NA prediction 0.922293241772055 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2632707 chr7:2632707 synonymous SNV . 0 21 hm7G_associated_SNPs_2106 0 0 0 0 2 IQCE chr7:2632656 3'AG 2632656 Downstream 52bp 2076 chr7 2632707 2632707 1 + G A rs199837712 2632707 + 2632687 2632727 41 GCCGACCTGGAGAAGGAGCTGGAGTGCGCGAGGGAGGGCGA GCCGACCTGGAGAAGGAGCTAGAGTGCGCGAGGGAGGGCGA Direct Loss 0.961146620886027 0 NA NA prediction 0.922293241772055 Functional Loss - IQCE ENSG00000106012 CDS Human protein_coding chr7:2632707 chr7:2632707 synonymous SNV . 0 21 hm7G_associated_SNPs_2106 0 0 0 0 2 IQCE chr7:2632760 5'GT 2632760 Upstream 54bp 2077 chr5 140083567 140083567 1 + G C LUSC 140083567 + 140083547 140083587 41 ACTTTCTGGATCACATTAATGGAAAGAAACGTAAGGCTTGG ACTTTCTGGATCACATTAATCGAAAGAAACGTAAGGCTTGG Direct Loss 0.961083770336627 0 NA NA prediction 0.922167540673255 Functional Loss - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140083567 chr5:140083567 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2107 0 0 1 0 2 ZMAT2 chr5:140083503 3'AG 140083503 Downstream 65bp 2078 chr5 140083567 140083567 1 + G C LUSC 140083567 + 140083547 140083587 41 ACTTTCTGGATCACATTAATGGAAAGAAACGTAAGGCTTGG ACTTTCTGGATCACATTAATCGAAAGAAACGTAAGGCTTGG Direct Loss 0.961083770336627 0 NA NA prediction 0.922167540673255 Functional Loss - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140083567 chr5:140083567 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2107 0 0 1 0 2 ZMAT2 chr5:140083576 5'GT 140083576 Upstream 10bp 2079 chr6 44107279 44107279 1 + G T LUAD 44107279 + 44107259 44107299 41 CAGCGGCACATCATCGGGCTGCTGGTGGTTGTGGGCGTCCT CAGCGGCACATCATCGGGCTTCTGGTGGTTGTGGGCGTCCT Direct Loss 0.961073568515443 0 NA NA prediction 0.922147137030886 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107279 chr6:44107279 synonymous SNV . 0 21 hm7G_associated_SNPs_2108 0 0 1 0 2 TMEM63B chr6:44107204 3'AG 44107204 Downstream 76bp 2080 chr6 44107279 44107279 1 + G T LUAD 44107279 + 44107259 44107299 41 CAGCGGCACATCATCGGGCTGCTGGTGGTTGTGGGCGTCCT CAGCGGCACATCATCGGGCTTCTGGTGGTTGTGGGCGTCCT Direct Loss 0.961073568515443 0 NA NA prediction 0.922147137030886 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107279 chr6:44107279 synonymous SNV . 0 21 hm7G_associated_SNPs_2108 0 0 1 0 2 TMEM63B chr6:44107346 5'GT 44107346 Upstream 68bp 2081 chr5 176860608 176860608 1 + G A UCEC 176860608 + 176860588 176860628 41 CTAGAGAAAAAGCGGATCAAGAAGCGGAAAGGGGAGGCCAT CTAGAGAAAAAGCGGATCAAAAAGCGGAAAGGGGAGGCCAT Direct Loss 0.961041905683601 0 NA NA prediction 0.922083811367202 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GRK6 ENSG00000198055 CDS Human protein_coding chr5:176860608 chr5:176860608 synonymous SNV . 0 21 hm7G_associated_SNPs_2111 0 0 7 0 2 GRK6 chr5:176860537 3'AG 176860537 Downstream 72bp 2082 chr5 176860608 176860608 1 + G A UCEC 176860608 + 176860588 176860628 41 CTAGAGAAAAAGCGGATCAAGAAGCGGAAAGGGGAGGCCAT CTAGAGAAAAAGCGGATCAAAAAGCGGAAAGGGGAGGCCAT Direct Loss 0.961041905683601 0 NA NA prediction 0.922083811367202 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GRK6 ENSG00000198055 CDS Human protein_coding chr5:176860608 chr5:176860608 synonymous SNV . 0 21 hm7G_associated_SNPs_2111 0 0 7 0 2 GRK6 chr5:176860677 5'GT 176860677 Upstream 70bp 2083 chr6 25701497 25701497 1 + G A SKCM 25701497 + 25701477 25701517 41 CTCCTGCGTCACTGCGACGTGAACAAGGATGGAAAAATTCA CTCCTGCGTCACTGCGACGTAAACAAGGATGGAAAAATTCA Direct Loss 0.960997392908551 0 NA NA prediction 0.921994785817102 Functional Loss - SCGN ENSG00000079689 CDS Human protein_coding chr6:25701497 chr6:25701497 synonymous SNV . 0 21 hm7G_associated_SNPs_2113 0 0 0 0 1 SCGN chr6:25701435 3'AG 25701435 Downstream 63bp 2084 chr20 32441333 32441333 1 + G C PRAD 32441333 + 32441313 32441353 41 GAAGAGGAGGACGACGACATGAAGGAATTGGAGAACTGGGC GAAGAGGAGGACGACGACATCAAGGAATTGGAGAACTGGGC Direct Loss 0.960985146149847 0 NA NA prediction 0.921970292299694 Functional Loss - CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32441333 chr20:32441333 nonsynonymous SNV 0.927 1 21 hm7G_associated_SNPs_2114 0 0 1 0 1 CHMP4B chr20:32441302 3'AG 32441302 Downstream 32bp 2085 chr20 55093163 55093163 1 + G T UCEC 55093163 + 55093143 55093183 41 CAATGAATGAGAGCTCTTCTGGAAAAGCTGGGAAGCCTCCG CAATGAATGAGAGCTCTTCTTGAAAAGCTGGGAAGCCTCCG Direct Loss 0.960977615674035 0 NA NA prediction 0.92195523134807 Functional Loss - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55093163 chr20:55093163 stopgain 0.040 1 21 hm7G_associated_SNPs_2115 0 0 1 0 1 RTFDC1 chr20:55093143 3'AG 55093143 Downstream 21bp 2086 chr20 54970674 54970674 1 + G A LUSC 54970674 + 54970654 54970694 41 AAGCTGATCATTAGCCAGCTGCTATATGACGGCTACATCAG AAGCTGATCATTAGCCAGCTACTATATGACGGCTACATCAG Direct Loss 0.960971197303693 0 NA NA prediction 0.921942394607387 Functional Loss - CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54970674 chr20:54970674 synonymous SNV . 0 21 hm7G_associated_SNPs_2116 0 0 1 0 1 CSTF1 chr20:54970577 3'AG 54970577 Downstream 98bp 2087 chr16 56492471 56492471 1 + G C HNSC 56492471 + 56492451 56492491 41 ATGATCAAGTCTGATGATTTGAAGAAGAGAAGAGAGCCTCA ATGATCAAGTCTGATGATTTCAAGAAGAGAAGAGAGCCTCA Direct Loss 0.960942832556537 0 NA NA prediction 0.921885665113074 Functional Loss - OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56492471 chr16:56492471 stoploss 1.000 2 21 hm7G_associated_SNPs_2119 0 0 1 0 2 OGFOD1 chr16:56492460 3'AG 56492460 Downstream 12bp 2088 chr16 56492471 56492471 1 + G C HNSC 56492471 + 56492451 56492491 41 ATGATCAAGTCTGATGATTTGAAGAAGAGAAGAGAGCCTCA ATGATCAAGTCTGATGATTTCAAGAAGAGAAGAGAGCCTCA Direct Loss 0.960942832556537 0 NA NA prediction 0.921885665113074 Functional Loss - OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56492471 chr16:56492471 stoploss 1.000 2 21 hm7G_associated_SNPs_2119 0 0 1 0 2 OGFOD1 chr16:56492506 5'GT 56492506 Upstream 36bp 2089 chr1 179521777 179521777 1 - C G LUAD 179521777 - 179521757 179521797 41 GCTGGGCTTCAGCACTCACTGGCTGTGGAGGCTGAAGCGCA GCTGGGCTTCAGCACTCACTCGCTGTGGAGGCTGAAGCGCA Direct Loss 0.960914428486614 0 NA NA prediction 0.921828856973228 Functional Loss - NPHS2 ENSG00000116218 CDS Human protein_coding chr1:179521777 chr1:179521777 synonymous SNV . 0 21 hm7G_associated_SNPs_2120 0 0 0 0 2 NPHS2 chr1:179521738 5'GT 179521738 Upstream 40bp 2090 chr1 179521777 179521777 1 - C G LUAD 179521777 - 179521757 179521797 41 GCTGGGCTTCAGCACTCACTGGCTGTGGAGGCTGAAGCGCA GCTGGGCTTCAGCACTCACTCGCTGTGGAGGCTGAAGCGCA Direct Loss 0.960914428486614 0 NA NA prediction 0.921828856973228 Functional Loss - NPHS2 ENSG00000116218 CDS Human protein_coding chr1:179521777 chr1:179521777 synonymous SNV . 0 21 hm7G_associated_SNPs_2120 0 0 0 0 2 NPHS2 chr1:179521816 3'AG 179521816 Downstream 40bp 2091 chr2 233546349 233546349 1 + G A SKCM 233546349 + 233546329 233546369 41 CAGAGTTGAAAGCTGAGCAAGATGAGCGGAAGCGGGAGGAG CAGAGTTGAAAGCTGAGCAAAATGAGCGGAAGCGGGAGGAG Direct Loss 0.960882338799954 0 NA NA prediction 0.921764677599908 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233546349 chr2:233546349 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2121 0 0 0 0 1 EFHD1 chr2:233546295 3'AG 233546295 Downstream 55bp 2092 chr19 33465049 33465049 1 + G A PRAD 33465049 + 33465029 33465069 41 GCCCTACAGAAGTTTACTGTGCTGGACCTTGGAATGGTGCT GCCCTACAGAAGTTTACTGTACTGGACCTTGGAATGGTGCT Direct Loss 0.960863395163695 0 NA NA prediction 0.92172679032739 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465049 chr19:33465049 synonymous SNV . 0 21 hm7G_associated_SNPs_2122 0 0 1 0 2 FAAP24 chr19:33464966 3'AG 33464966 Downstream 84bp 2093 chr19 33465049 33465049 1 + G A PRAD 33465049 + 33465029 33465069 41 GCCCTACAGAAGTTTACTGTGCTGGACCTTGGAATGGTGCT GCCCTACAGAAGTTTACTGTACTGGACCTTGGAATGGTGCT Direct Loss 0.960863395163695 0 NA NA prediction 0.92172679032739 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465049 chr19:33465049 synonymous SNV . 0 21 hm7G_associated_SNPs_2122 0 0 1 0 2 FAAP24 chr19:33465118 5'GT 33465118 Upstream 70bp 2094 chr16 25186283 25186283 1 + G A CESC 25186283 + 25186263 25186303 41 AATCACTTGAATTCCTGGATGAAATGGAGCTGCTGGAGCAG AATCACTTGAATTCCTGGATAAAATGGAGCTGCTGGAGCAG Direct Loss 0.960852600890895 0 NA NA prediction 0.921705201781791 Functional Loss - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25186283 chr16:25186283 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2125 0 0 1 0 2 LCMT1 chr16:25186258 3'AG 25186258 Downstream 26bp 2095 chr16 25186283 25186283 1 + G A CESC 25186283 + 25186263 25186303 41 AATCACTTGAATTCCTGGATGAAATGGAGCTGCTGGAGCAG AATCACTTGAATTCCTGGATAAAATGGAGCTGCTGGAGCAG Direct Loss 0.960852600890895 0 NA NA prediction 0.921705201781791 Functional Loss - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25186283 chr16:25186283 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2125 0 0 1 0 2 LCMT1 chr16:25186355 5'GT 25186355 Upstream 73bp 2096 chr22 37273713 37273713 1 + G A COAD 37273713 + 37273693 37273733 41 TAGCTCTGAATTACCGGGACGCTGAGGGGGATCTGGTTCGG TAGCTCTGAATTACCGGGACACTGAGGGGGATCTGGTTCGG Direct Loss 0.960844679522764 0 NA NA prediction 0.921689359045527 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37273713 chr22:37273713 nonsynonymous SNV 0.229 0 21 hm7G_associated_SNPs_2126 0 0 0 0 1 NCF4 chr22:37273670 3'AG 37273670 Downstream 44bp 2097 chr6 42995130 42995130 1 + G A rs143502470 42995130 + 42995110 42995150 41 ATGGCACAGCAGGAACGAAAGCAACAGCAGGAGCTGCACCT ATGGCACAGCAGGAACGAAAACAACAGCAGGAGCTGCACCT Direct Loss 0.960806246298968 0 NA NA prediction 0.921612492597936 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42995130 chr6:42995130 synonymous SNV . 0 21 hm7G_associated_SNPs_2127 0 0 1 0 2 RRP36 chr6:42995098 3'AG 42995098 Downstream 33bp 2098 chr6 42995130 42995130 1 + G A rs143502470 42995130 + 42995110 42995150 41 ATGGCACAGCAGGAACGAAAGCAACAGCAGGAGCTGCACCT ATGGCACAGCAGGAACGAAAACAACAGCAGGAGCTGCACCT Direct Loss 0.960806246298968 0 NA NA prediction 0.921612492597936 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42995130 chr6:42995130 synonymous SNV . 0 21 hm7G_associated_SNPs_2127 0 0 1 0 2 RRP36 chr6:42995215 5'GT 42995215 Upstream 86bp 2099 chr5 226082 226082 1 + G A LUSC 226082 + 226062 226102 41 GTGGACAGAGCCTCAAGTTTGGAAAGGGCGGGCAGGCCCAT GTGGACAGAGCCTCAAGTTTAGAAAGGGCGGGCAGGCCCAT Direct Loss 0.96079614119827 0 NA NA prediction 0.92159228239654 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:226082 chr5:226082 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2128 0 0 1 0 1 SDHA chr5:225998 3'AG 225998 Downstream 85bp 2100 chr13 41943315 41943315 1 + G A UCEC 41943315 + 41943295 41943335 41 TAGAAGAAGAAAGAAAGCATGCAGAAAGAGAACGTCAACAG TAGAAGAAGAAAGAAAGCATACAGAAAGAGAACGTCAACAG Direct Loss 0.960781539426526 0 NA NA prediction 0.921563078853051 Functional Loss - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41943315 chr13:41943315 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_2129 0 0 1 1 1 NAA16 chr13:41943226 3'AG 41943226 Downstream 90bp 2101 chr3 186503753 186503753 1 + G A BLCA 186503753 + 186503733 186503773 41 GTGGAACAAATGTTCGAAATGAAATGCAAAAACTGCAGGCT GTGGAACAAATGTTCGAAATAAAATGCAAAAACTGCAGGCT Direct Loss 0.960761673338345 0 NA NA prediction 0.921523346676689 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186503753 chr3:186503753 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2130 0 0 1 1 1 EIF4A2 chr3:186503840 5'GT 186503840 Upstream 88bp 2102 chr11 837554 837554 1 + G A LUSC 837554 + 837534 837574 41 CCGTGTGGTCCCAGACAGCTGCTGCAAGACGGTGGTGGCTC CCGTGTGGTCCCAGACAGCTACTGCAAGACGGTGGTGGCTC Direct Loss 0.960708468296098 0 NA NA prediction 0.921416936592195 Functional Loss - CD151 ENSG00000177697 CDS Human protein_coding chr11:837554 chr11:837554 nonsynonymous SNV 0.800 5 21 hm7G_associated_SNPs_2132 0 0 1 1 2 CD151 chr11:837460 3'AG 837460 Downstream 95bp 2103 chr11 837554 837554 1 + G A LUSC 837554 + 837534 837574 41 CCGTGTGGTCCCAGACAGCTGCTGCAAGACGGTGGTGGCTC CCGTGTGGTCCCAGACAGCTACTGCAAGACGGTGGTGGCTC Direct Loss 0.960708468296098 0 NA NA prediction 0.921416936592195 Functional Loss - CD151 ENSG00000177697 CDS Human protein_coding chr11:837554 chr11:837554 nonsynonymous SNV 0.800 5 21 hm7G_associated_SNPs_2132 0 0 1 1 2 CD151 chr11:837618 5'GT 837618 Upstream 65bp 2104 chr14 21511199 21511199 1 + G T LUAD 21511199 + 21511179 21511219 41 CCCCTTCTGCTGCTTCTGCTGCTGGGGCTGTGGGTGGCAGA CCCCTTCTGCTGCTTCTGCTTCTGGGGCTGTGGGTGGCAGA Direct Loss 0.960702497884852 0 NA NA prediction 0.921404995769704 Functional Loss - RNASE7 ENSG00000165799 CDS Human protein_coding chr14:21511199 chr14:21511199 synonymous SNV . 0 21 hm7G_associated_SNPs_2133 0 0 0 0 1 RNASE7 chr14:21511112 3'AG 21511112 Downstream 88bp 2105 chr4 39465185 39465185 1 + G T LUSC 39465185 + 39465165 39465205 41 TCCCAATATTGGAGAGTGTTGGGGAGGTGGAGAATATGCCA TCCCAATATTGGAGAGTGTTTGGGAGGTGGAGAATATGCCA Direct Loss 0.960695012260142 0 NA NA prediction 0.921390024520284 Functional Loss - LIAS ENSG00000121897 CDS Human protein_coding chr4:39465185 chr4:39465185 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2135 0 0 1 0 2 LIAS chr4:39465145 3'AG 39465145 Downstream 41bp 2106 chr4 39465185 39465185 1 + G T LUSC 39465185 + 39465165 39465205 41 TCCCAATATTGGAGAGTGTTGGGGAGGTGGAGAATATGCCA TCCCAATATTGGAGAGTGTTTGGGAGGTGGAGAATATGCCA Direct Loss 0.960695012260142 0 NA NA prediction 0.921390024520284 Functional Loss - LIAS ENSG00000121897 CDS Human protein_coding chr4:39465185 chr4:39465185 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2135 0 0 1 0 2 LIAS chr4:39465225 5'GT 39465225 Upstream 41bp 2107 chr3 114026796 114026796 1 + G A ESCA 114026796 + 114026776 114026816 41 ACCTCAGGAGAAAATCAGCTGGACAGGAGGAATGGAGCCCC ACCTCAGGAGAAAATCAGCTAGACAGGAGGAATGGAGCCCC Direct Loss 0.960692710697122 0 NA NA prediction 0.921385421394244 Functional Loss - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114026796 chr3:114026796 nonsynonymous SNV 0.003 0 21 hm7G_associated_SNPs_2136 0 0 0 0 1 TIGIT chr3:114026742 3'AG 114026742 Downstream 55bp 2108 chr12 4870257 4870257 1 + G A SKCM 4870257 + 4870237 4870277 41 TCTGCGAGTGGCCGAAATCTGGATGGATGAGCACAAACACA TCTGCGAGTGGCCGAAATCTAGATGGATGAGCACAAACACA Direct Loss 0.960676452994371 0 NA NA prediction 0.921352905988743 Functional Loss - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4870257 chr12:4870257 stopgain 0.913 1 21 hm7G_associated_SNPs_2137 0 0 0 0 1 GALNT8 chr12:4870309 5'GT 4870309 Upstream 53bp 2109 chrX 48549530 48549530 1 + G T UCEC 48549530 + 48549510 48549550 41 ACCAGGCTGGCGATGAAGATGAAGATGATGAATGGGATGAC ACCAGGCTGGCGATGAAGATTAAGATGATGAATGGGATGAC Direct Loss 0.960675162720739 0 NA NA prediction 0.921350325441477 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48549530 chrX:48549530 stopgain 0.964 0 21 hm7G_associated_SNPs_2138 0 0 0 0 1 WAS chrX:48549498 3'AG 48549498 Downstream 33bp 2110 chr19 5691566 5691566 1 + G A CESC 5691566 + 5691546 5691586 41 GGGACGCACATCCGCGCCAAGAGGAAGCGGGAGGAGCTGAG GGGACGCACATCCGCGCCAAAAGGAAGCGGGAGGAGCTGAG Direct Loss 0.960675056051332 0 NA NA prediction 0.921350112102665 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;Hela;Control|31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691566 chr19:5691566 synonymous SNV . 0 21 hm7G_associated_SNPs_2139 0 0 45 0 1 RPL36 chr19:5691543 3'AG 5691543 Downstream 24bp 2111 chrX 130220591 130220591 1 + G A ESCA 130220591 + 130220571 130220611 41 CTGATCCAGTGGAAACCTCTGCTGAAGCCCGGGCTGCTGTC CTGATCCAGTGGAAACCTCTACTGAAGCCCGGGCTGCTGTC Direct Loss 0.960655715400932 0 NA NA prediction 0.921311430801864 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220591 chrX:130220591 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_2140 0 0 0 0 2 ARHGAP36 chrX:130220533 3'AG 130220533 Downstream 59bp 2112 chrX 130220591 130220591 1 + G A ESCA 130220591 + 130220571 130220611 41 CTGATCCAGTGGAAACCTCTGCTGAAGCCCGGGCTGCTGTC CTGATCCAGTGGAAACCTCTACTGAAGCCCGGGCTGCTGTC Direct Loss 0.960655715400932 0 NA NA prediction 0.921311430801864 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220591 chrX:130220591 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_2140 0 0 0 0 2 ARHGAP36 chrX:130220639 5'GT 130220639 Upstream 49bp 2113 chr20 42203604 42203604 1 + G T STAD 42203604 + 42203584 42203624 41 TGATCGAGCAGTGGACTGGTGGTGCTTGGGGGCAGTCCTCT TGATCGAGCAGTGGACTGGTTGTGCTTGGGGGCAGTCCTCT Direct Loss 0.96064689095663 0 NA NA prediction 0.921293781913261 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42203604 chr20:42203604 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2141 0 0 1 3 2 SGK2 chr20:42203549 3'AG 42203549 Downstream 56bp 2114 chr20 42203604 42203604 1 + G T STAD 42203604 + 42203584 42203624 41 TGATCGAGCAGTGGACTGGTGGTGCTTGGGGGCAGTCCTCT TGATCGAGCAGTGGACTGGTTGTGCTTGGGGGCAGTCCTCT Direct Loss 0.96064689095663 0 NA NA prediction 0.921293781913261 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42203604 chr20:42203604 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2141 0 0 1 3 2 SGK2 chr20:42203644 5'GT 42203644 Upstream 41bp 2115 chr8 145066883 145066883 1 + G A BRCA 145066883 + 145066863 145066903 41 CTCGCAGTGGACACCCAGCTGCTACTGGGGAACAAGCAGCT CTCGCAGTGGACACCCAGCTACTACTGGGGAACAAGCAGCT Direct Loss 0.960642101175155 0 NA NA prediction 0.92128420235031 Functional Loss - GRINA ENSG00000178719 CDS Human protein_coding chr8:145066883 chr8:145066883 synonymous SNV . 0 21 hm7G_associated_SNPs_2142 0 0 1 0 1 GRINA chr8:145066860 3'AG 145066860 Downstream 24bp 2116 chr19 48879425 48879425 1 + G A LIHC 48879425 + 48879405 48879445 41 TTCCTGGATGAGGGTGGCATGGTGCTGACCACCCTCCCCTT TTCCTGGATGAGGGTGGCATAGTGCTGACCACCCTCCCCTT Direct Loss 0.960636337461694 0 NA NA prediction 0.921272674923388 Functional Loss - SYNGR4 ENSG00000105467 CDS Human protein_coding chr19:48879425 chr19:48879425 nonsynonymous SNV 0.799 1 21 hm7G_associated_SNPs_2143 0 0 0 0 1 SYNGR4 chr19:48879342 3'AG 48879342 Downstream 84bp 2117 chr8 145161115 145161115 1 + G C LUAD 145161115 + 145161095 145161135 41 TCAGCACAGCCCGCAGCCATGAGTTCAGCCGGGAGCCCAGC TCAGCACAGCCCGCAGCCATCAGTTCAGCCGGGAGCCCAGC Direct Loss 0.960631117875789 0 NA NA prediction 0.921262235751579 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145161115 chr8:145161115 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_2144 0 0 1 0 1 MAF1 chr8:145161144 5'GT 145161144 Upstream 30bp 2118 chr5 175306002 175306002 1 + G A LUAD 175306002 + 175305982 175306022 41 GAGGAGCGGCAGGAGGCGCTGCGGCAGCAGGAGGAGGAGCG GAGGAGCGGCAGGAGGCGCTACGGCAGCAGGAGGAGGAGCG Direct Loss 0.960532260061882 0 NA NA prediction 0.921064520123763 Functional Loss - CPLX2 ENSG00000145920 CDS Human protein_coding chr5:175306002 chr5:175306002 synonymous SNV . 0 21 hm7G_associated_SNPs_2148 0 0 1 0 2 CPLX2 chr5:175305911 3'AG 175305911 Downstream 92bp 2119 chr5 175306002 175306002 1 + G A LUAD 175306002 + 175305982 175306022 41 GAGGAGCGGCAGGAGGCGCTGCGGCAGCAGGAGGAGGAGCG GAGGAGCGGCAGGAGGCGCTACGGCAGCAGGAGGAGGAGCG Direct Loss 0.960532260061882 0 NA NA prediction 0.921064520123763 Functional Loss - CPLX2 ENSG00000145920 CDS Human protein_coding chr5:175306002 chr5:175306002 synonymous SNV . 0 21 hm7G_associated_SNPs_2148 0 0 1 0 2 CPLX2 chr5:175306086 5'GT 175306086 Upstream 85bp 2120 chr7 99036768 99036768 1 + G A LUSC 99036768 + 99036748 99036788 41 TTGGAGATCGCGGTGGAGCAGCAGCTGGGGGCGCAGCCGCT TTGGAGATCGCGGTGGAGCAACAGCTGGGGGCGCAGCCGCT Direct Loss 0.960527554200064 0 NA NA prediction 0.921055108400127 Functional Loss - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99036768 chr7:99036768 synonymous SNV . 0 21 hm7G_associated_SNPs_2149 0 0 1 0 1 CPSF4 chr7:99036808 5'GT 99036808 Upstream 41bp 2121 chr5 170818327 170818327 1 + G T LUAD 170818327 + 170818307 170818347 41 AGGTCAGTTTAGGGGCTGGTGCAAAGGATGAGTTGCACATT AGGTCAGTTTAGGGGCTGGTTCAAAGGATGAGTTGCACATT Direct Loss 0.960526001513439 0 NA NA prediction 0.921052003026877 Functional Loss - NPM1 ENSG00000181163 CDS Human protein_coding chr5:170818327 chr5:170818327 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_2150 0 0 1 0 1 NPM1 chr5:170818309 3'AG 170818309 Downstream 19bp 2122 chr4 69968552 69968552 1 + G A SKCM 69968552 + 69968532 69968572 41 AAGACTTTGTACAGAGCTCTGGAGAAAATGGTGTTGTGGTG AAGACTTTGTACAGAGCTCTAGAGAAAATGGTGTTGTGGTG Direct Loss 0.960509849883378 0 NA NA prediction 0.921019699766757 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69968552 chr4:69968552 nonsynonymous SNV 0.864 3 21 hm7G_associated_SNPs_2151 0 0 0 0 1 UGT2B7 chr4:69968525 3'AG 69968525 Downstream 28bp 2123 chr14 90735757 90735757 1 + G A STAD 90735757 + 90735737 90735777 41 AAAGATATGACTCCAATTCTGGTGGTGAGAGAGAAATTCAG AAAGATATGACTCCAATTCTAGTGGTGAGAGAGAAATTCAG Direct Loss 0.96050922572916 0 NA NA prediction 0.92101845145832 Functional Loss - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90735757 chr14:90735757 nonsynonymous SNV 0.992 2 21 hm7G_associated_SNPs_2152 0 0 0 0 1 PSMC1 chr14:90735741 3'AG 90735741 Downstream 17bp 2124 chr2 37321291 37321291 1 + G A STAD 37321291 + 37321271 37321311 41 AGGAGACTGAAGAAGATGAAGAAGAAAAAGAACAGGATGAA AGGAGACTGAAGAAGATGAAAAAGAAAAAGAACAGGATGAA Direct Loss 0.960492156214636 0 NA NA prediction 0.920984312429272 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37321291 chr2:37321291 nonsynonymous SNV 0.962 0 21 hm7G_associated_SNPs_2153 0 0 1 0 1 GPATCH11 chr2:37321225 3'AG 37321225 Downstream 67bp 2125 chrX 3021805 3021805 1 + G A DLBC 3021805 + 3021785 3021825 41 AATTGCATTGTCTTATAGGTGGAAAAGGCATGGGGGGCTGG AATTGCATTGTCTTATAGGTAGAAAAGGCATGGGGGGCTGG Direct Loss 0.960476261605671 0 NA NA prediction 0.920952523211342 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3021805 chrX:3021805 nonsynonymous SNV 0.898 4 21 hm7G_associated_SNPs_2155 0 0 0 0 1 ARSF chrX:3021803 3'AG 3021803 Downstream 3bp 2126 chr1 75609535 75609535 1 + G T SARC 75609535 + 75609515 75609555 41 GTTTTTTAAATGCAGGGAATGGGATTAGTGTGGAAGGTGCC GTTTTTTAAATGCAGGGAATTGGATTAGTGTGGAAGGTGCC Direct Loss 0.960451334807903 0 NA NA prediction 0.920902669615807 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75609535 chr1:75609535 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2157 0 0 0 0 2 LHX8 chr1:75609530 3'AG 75609530 Downstream 6bp 2127 chr1 75609535 75609535 1 + G T SARC 75609535 + 75609515 75609555 41 GTTTTTTAAATGCAGGGAATGGGATTAGTGTGGAAGGTGCC GTTTTTTAAATGCAGGGAATTGGATTAGTGTGGAAGGTGCC Direct Loss 0.960451334807903 0 NA NA prediction 0.920902669615807 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75609535 chr1:75609535 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2157 0 0 0 0 2 LHX8 chr1:75609633 5'GT 75609633 Upstream 99bp 2128 chr1 174977786 174977786 1 + G A BRCA 174977786 + 174977766 174977806 41 ATATTGTGTAGAAAGAAAGTGGAAAACACAAGGTGGGATTA ATATTGTGTAGAAAGAAAGTAGAAAACACAAGGTGGGATTA Direct Loss 0.960449186458268 0 NA NA prediction 0.920898372916536 Functional Loss - CACYBP ENSG00000116161 CDS Human protein_coding chr1:174977786 chr1:174977786 synonymous SNV . 0 21 hm7G_associated_SNPs_2158 0 0 1 0 1 CACYBP chr1:174977745 3'AG 174977745 Downstream 42bp 2129 chr2 73118555 73118555 1 + G A CESC 73118555 + 73118535 73118575 41 CGAAAAGGGCTGCAGGAGCTGAAGGCAAAGGGGAAGCTGGT CGAAAAGGGCTGCAGGAGCTAAAGGCAAAGGGGAAGCTGGT Direct Loss 0.960448946403462 0 NA NA prediction 0.920897892806924 Functional Loss - SPR ENSG00000116096 CDS Human protein_coding chr2:73118555 chr2:73118555 synonymous SNV . 0 21 hm7G_associated_SNPs_2159 0 0 1 0 1 SPR chr2:73118476 3'AG 73118476 Downstream 80bp 2130 chr2 232576677 232576677 1 + G A UCEC 232576677 + 232576657 232576697 41 GGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGA GGTGGGGAGGAAGAGGAGGAAGAAGAAGAAGGTGATGGTGA Direct Loss 0.96044471768894 0 NA NA prediction 0.92088943537788 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576677 chr2:232576677 synonymous SNV . 0 21 hm7G_associated_SNPs_2160 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 81bp 2131 chr2 232576677 232576677 1 + G A UCEC 232576677 + 232576657 232576697 41 GGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGA GGTGGGGAGGAAGAGGAGGAAGAAGAAGAAGGTGATGGTGA Direct Loss 0.96044471768894 0 NA NA prediction 0.92088943537788 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576677 chr2:232576677 synonymous SNV . 0 21 hm7G_associated_SNPs_2160 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 78bp 2132 chr2 232576677 232576677 1 + G A UCEC 232576677 + 232576657 232576697 41 GGTGGGGAGGAAGAGGAGGAGGAAGAAGAAGGTGATGGTGA GGTGGGGAGGAAGAGGAGGAAGAAGAAGAAGGTGATGGTGA Direct Loss 0.96044471768894 0 NA NA prediction 0.92088943537788 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576677 chr2:232576677 synonymous SNV . 0 21 hm7G_associated_SNPs_2160 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 17bp 2133 chr3 186302269 186302269 1 + G C LUSC 186302269 + 186302249 186302289 41 CCAGGAGCGAAGCTATGGAAGAAAGGGGAAGGGCTCCCCAA CCAGGAGCGAAGCTATGGAACAAAGGGGAAGGGCTCCCCAA Direct Loss 0.960411816623094 0 NA NA prediction 0.920823633246189 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302269 chr3:186302269 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2162 0 0 1 0 1 DNAJB11 chr3:186302219 3'AG 186302219 Downstream 51bp 2134 chr20 35238065 35238065 1 + G A CESC 35238065 + 35238045 35238085 41 GCAATTACCTACAGATTGATGAGGAAGAATATGGTGGCACG GCAATTACCTACAGATTGATAAGGAAGAATATGGTGGCACG Direct Loss 0.960394583039871 0 NA NA prediction 0.920789166079743 Functional Loss - C20orf24;TGIF2-C20orf24 ENSG00000101084;ENSG00000259399 CDS Human other chr20:35238065 chr20:35238065 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_2163 0 0 1 0 3 C20orf24;TGIF2-C20orf24 chr20:35238004 3'AG 35238004 Downstream 62bp 2135 chr20 35238065 35238065 1 + G A CESC 35238065 + 35238045 35238085 41 GCAATTACCTACAGATTGATGAGGAAGAATATGGTGGCACG GCAATTACCTACAGATTGATAAGGAAGAATATGGTGGCACG Direct Loss 0.960394583039871 0 NA NA prediction 0.920789166079743 Functional Loss - C20orf24;TGIF2-C20orf24 ENSG00000101084;ENSG00000259399 CDS Human other chr20:35238065 chr20:35238065 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_2163 0 0 1 0 3 C20orf24;TGIF2-C20orf24 chr20:35238133 5'GT 35238133 Upstream 69bp 2136 chr20 35238065 35238065 1 + G A CESC 35238065 + 35238045 35238085 41 GCAATTACCTACAGATTGATGAGGAAGAATATGGTGGCACG GCAATTACCTACAGATTGATAAGGAAGAATATGGTGGCACG Direct Loss 0.960394583039871 0 NA NA prediction 0.920789166079743 Functional Loss - C20orf24;TGIF2-C20orf24 ENSG00000101084;ENSG00000259399 CDS Human protein_coding chr20:35238065 chr20:35238065 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_2163 0 0 1 0 3 C20orf24 chr20:35238161 5'GT 35238161 Upstream 97bp 2137 chr20 20013817 20013817 1 + G C BRCA 20013817 + 20013797 20013837 41 TACCTCATCCTGTGAGGCCTGAAGACATTGAATAACCCTGG TACCTCATCCTGTGAGGCCTCAAGACATTGAATAACCCTGG Direct Loss 0.96038656654124 0 NA NA prediction 0.92077313308248 Functional Loss - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20013817 chr20:20013817 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2165 0 0 1 0 1 NAA20 chr20:20013746 3'AG 20013746 Downstream 72bp 2138 chr1 28601455 28601455 1 + G A UCEC 28601455 + 28601435 28601475 41 ACCTACAATACCATCGCCATGCACAGTGGTGTGGACACCTC ACCTACAATACCATCGCCATACACAGTGGTGTGGACACCTC Direct Loss 0.960377854909713 0 NA NA prediction 0.920755709819425 Functional Loss - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28601455 chr1:28601455 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_2166 0 0 1 0 1 SESN2 chr1:28601526 5'GT 28601526 Upstream 72bp 2139 chr4 53731537 53731537 1 + G T GBM 53731537 + 53731517 53731557 41 CTGAGCTGCAGTGAACAGCTGAATAGGTGCATTCGCTGGGC CTGAGCTGCAGTGAACAGCTTAATAGGTGCATTCGCTGGGC Direct Loss 0.96029477002669 0 NA NA prediction 0.920589540053381 Functional Loss - RASL11B ENSG00000128045 CDS Human protein_coding chr4:53731537 chr4:53731537 synonymous SNV . 0 21 hm7G_associated_SNPs_2173 0 0 0 0 1 RASL11B chr4:53731502 3'AG 53731502 Downstream 36bp 2140 chr22 41918884 41918884 1 + G T HNSC 41918884 + 41918864 41918904 41 ATGAAGATATGGGGCGCTCAGCAGCTGTGGCCAAGCAGGCA ATGAAGATATGGGGCGCTCATCAGCTGTGGCCAAGCAGGCA Direct Loss 0.960275985780155 0 NA NA prediction 0.920551971560311 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41918884 chr22:41918884 nonsynonymous SNV 0.983 5 21 hm7G_associated_SNPs_2174 0 0 1 0 1 ACO2 chr22:41918834 3'AG 41918834 Downstream 51bp 2141 chr16 72055201 72055201 1 + G A rs545513947 72055201 + 72055181 72055221 41 AAGGCCGAGCTGCGCCGCCTGCTGACCAAGGTGGGCAGCTG AAGGCCGAGCTGCGCCGCCTACTGACCAAGGTGGGCAGCTG Direct Loss 0.960263765906193 0 NA NA prediction 0.920527531812385 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72055201 chr16:72055201 synonymous SNV . 0 21 hm7G_associated_SNPs_2175 0 0 0 0 1 DHODH chr16:72055210 5'GT 72055210 Upstream 10bp 2142 chr11 73677249 73677249 1 + G A UCEC 73677249 + 73677229 73677269 41 TGACCATTGATGTGAAGCCCGGTTGGAGGCAGGGCACACGC TGACCATTGATGTGAAGCCCAGTTGGAGGCAGGGCACACGC Direct Loss 0.960253596967509 0 NA NA prediction 0.920507193935019 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73677249 chr11:73677249 nonsynonymous SNV 0.900 5 21 hm7G_associated_SNPs_2176 0 0 0 0 2 DNAJB13 chr11:73677183 3'AG 73677183 Downstream 67bp 2143 chr11 73677249 73677249 1 + G A UCEC 73677249 + 73677229 73677269 41 TGACCATTGATGTGAAGCCCGGTTGGAGGCAGGGCACACGC TGACCATTGATGTGAAGCCCAGTTGGAGGCAGGGCACACGC Direct Loss 0.960253596967509 0 NA NA prediction 0.920507193935019 Functional Loss - DNAJB13 ENSG00000187726 CDS Human protein_coding chr11:73677249 chr11:73677249 nonsynonymous SNV 0.900 5 21 hm7G_associated_SNPs_2176 0 0 0 0 2 DNAJB13 chr11:73677296 5'GT 73677296 Upstream 48bp 2144 chr7 99008806 99008806 1 + G A SKCM 99008806 + 99008786 99008826 41 AATTAGATCAAAAGATGAGAGAAGGTGAGTAGGGGAGTTCC AATTAGATCAAAAGATGAGAAAAGGTGAGTAGGGGAGTTCC Direct Loss 0.960246720648631 0 NA NA prediction 0.920493441297263 Functional Loss - BUD31 ENSG00000106245 CDS Human protein_coding chr7:99008806 chr7:99008806 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2178 0 0 1 0 1 BUD31 chr7:99008809 5'GT 99008809 Upstream 4bp 2145 chr1 203832818 203832818 1 + G A BLCA 203832818 + 203832798 203832838 41 GGATTCAGGTGTGGCTCTATGAGCAAGTGAATATGCGGATA GGATTCAGGTGTGGCTCTATAAGCAAGTGAATATGCGGATA Direct Loss 0.960231497046939 0 NA NA prediction 0.920462994093879 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203832818 chr1:203832818 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_2179 0 0 1 3 2 SNRPE chr1:203832791 3'AG 203832791 Downstream 28bp 2146 chr1 203832818 203832818 1 + G A BLCA 203832818 + 203832798 203832838 41 GGATTCAGGTGTGGCTCTATGAGCAAGTGAATATGCGGATA GGATTCAGGTGTGGCTCTATAAGCAAGTGAATATGCGGATA Direct Loss 0.960231497046939 0 NA NA prediction 0.920462994093879 Functional Loss - SNRPE ENSG00000182004 CDS Human protein_coding chr1:203832818 chr1:203832818 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_2179 0 0 1 3 2 SNRPE chr1:203832853 5'GT 203832853 Upstream 36bp 2147 chr19 55855096 55855096 1 + G A rs200495666 55855096 + 55855076 55855116 41 GTGGGCTGCATTGCAGAGCTGCGGGAGGCAGATGAGGGGCT GTGGGCTGCATTGCAGAGCTACGGGAGGCAGATGAGGGGCT Direct Loss 0.96021666220185 0 NA NA prediction 0.9204333244037 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55855096 chr19:55855096 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_2181 0 0 1 0 1 KMT5C chr19:55855048 3'AG 55855048 Downstream 49bp 2148 chr21 15954528 15954528 1 + G A rs2822785 15954528 + 15954508 15954548 41 GCGAATACAAGAGGAGCAGTGGTCCCAGGGTCCAACTTGTG GCGAATACAAGAGGAGCAGTAGTCCCAGGGTCCAACTTGTG Direct Loss 0.960194372795098 0 NA NA prediction 0.920388745590196 Functional Loss - SAMSN1 ENSG00000155307 CDS Human protein_coding chr21:15954528 chr21:15954528 nonsynonymous SNV 0.002 1 21 hm7G_associated_SNPs_2182 0 0 0 0 1 SAMSN1 chr21:15954612 5'GT 15954612 Upstream 85bp 2149 chr7 142637485 142637485 1 + G A SKCM 142637485 + 142637465 142637505 41 CACTTTGTGGCCTCCTCAGTGGGTGAGATGTGGCAGGTGGT CACTTTGTGGCCTCCTCAGTAGGTGAGATGTGGCAGGTGGT Direct Loss 0.960161317417392 0 NA NA prediction 0.920322634834784 Functional Loss - C7orf34 ENSG00000165131 CDS Human protein_coding chr7:142637485 chr7:142637485 synonymous SNV . 0 21 hm7G_associated_SNPs_2184 0 0 0 0 1 C7orf34 chr7:142637439 3'AG 142637439 Downstream 47bp 2150 chr6 168434587 168434587 1 + G A BLCA 168434587 + 168434567 168434607 41 ATGTTTGTGTTATGGCGTATGGACAGACGGGCAGCGGAAAG ATGTTTGTGTTATGGCGTATAGACAGACGGGCAGCGGAAAG Direct Loss 0.960158250749909 0 NA NA prediction 0.920316501499818 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168434587 chr6:168434587 nonsynonymous SNV 0.164 5 21 hm7G_associated_SNPs_2185 0 0 1 0 1 KIF25 chr6:168434562 3'AG 168434562 Downstream 26bp 2151 chr3 9989230 9989230 1 + G A COAD 9989230 + 9989210 9989250 41 AAGCAGCAAGGGGAAGGGCAGGTTGTAGAGCACCAGGCCCC AAGCAGCAAGGGGAAGGGCAAGTTGTAGAGCACCAGGCCCC Direct Loss 0.960151282462371 0 NA NA prediction 0.920302564924742 Functional Loss - PRRT3 ENSG00000163704 CDS Human protein_coding chr3:9989230 chr3:9989230 synonymous SNV . 0 21 hm7G_associated_SNPs_2186 0 0 1 0 1 PRRT3 chr3:9989288 5'GT 9989288 Upstream 59bp 2152 chr16 8738480 8738480 1 + G A UCEC 8738480 + 8738460 8738500 41 GATCACTTCCGCTCCTGCCTGCACGCGCTGGAGCAGCTCGC GATCACTTCCGCTCCTGCCTACACGCGCTGGAGCAGCTCGC Direct Loss 0.960123459838345 0 NA NA prediction 0.920246919676689 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8738480 chr16:8738480 synonymous SNV . 0 21 hm7G_associated_SNPs_2187 0 0 1 0 1 METTL22 chr16:8738414 3'AG 8738414 Downstream 67bp 2153 chr16 89977541 89977541 1 + G C CESC 89977541 + 89977521 89977561 41 CTGAACCGCAACCAGGGCCTGAACAGGCTGATGCTGGCTGT CTGAACCGCAACCAGGGCCTCAACAGGCTGATGCTGGCTGT Direct Loss 0.960118163698522 0 NA NA prediction 0.920236327397045 Functional Loss - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89977541 chr16:89977541 nonsynonymous SNV 0.986 1 21 hm7G_associated_SNPs_2188 0 0 1 0 1 TCF25 chr16:89977488 3'AG 89977488 Downstream 54bp 2154 chr1 32742380 32742380 1 + G A SKCM 32742380 + 32742360 32742400 41 TACATCATCACTGAATACATGGAGAATGGTGGGTGCTACCC TACATCATCACTGAATACATAGAGAATGGTGGGTGCTACCC Direct Loss 0.960110123997285 0 NA NA prediction 0.920220247994571 Functional Loss - LCK ENSG00000182866 CDS Human protein_coding chr1:32742380 chr1:32742380 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2190 0 0 0 0 1 LCK chr1:32742387 5'GT 32742387 Upstream 8bp 2155 chrX 54470855 54470855 1 + G A UCEC 54470855 + 54470835 54470875 41 AATCTCCCCTCCAGGTCACAGCTACGAATGATGGGGCTGCT AATCTCCCCTCCAGGTCACAACTACGAATGATGGGGCTGCT Direct Loss 0.960098100854598 0 NA NA prediction 0.920196201709196 Functional Loss - TSR2 ENSG00000158526 CDS Human protein_coding chrX:54470855 chrX:54470855 nonsynonymous SNV 0.988 0 21 hm7G_associated_SNPs_2191 0 0 1 0 1 TSR2 chrX:54470849 3'AG 54470849 Downstream 7bp 2156 chr3 120315332 120315332 1 + G A PAAD 120315332 + 120315312 120315352 41 CGGTTGGCCATAAGAGCCCAGCTGAAACGAGAGTACCTGCT CGGTTGGCCATAAGAGCCCAACTGAAACGAGAGTACCTGCT Direct Loss 0.960093441800548 0 NA NA prediction 0.920186883601097 Functional Loss - NDUFB4 ENSG00000065518 CDS Human protein_coding chr3:120315332 chr3:120315332 synonymous SNV . 0 21 hm7G_associated_SNPs_2192 0 0 1 0 1 NDUFB4 chr3:120315386 5'GT 120315386 Upstream 55bp 2157 chr5 23509628 23509628 1 + G A rs186504490 23509628 + 23509608 23509648 41 ATACTTCACCAAGGAAGAATGGGCAGAGATGGGAGACTGGG ATACTTCACCAAGGAAGAATAGGCAGAGATGGGAGACTGGG Direct Loss 0.960082723208241 0 NA NA prediction 0.920165446416482 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509628 chr5:23509628 stopgain 0.999 0 21 hm7G_associated_SNPs_2193 0 0 0 0 2 PRDM9 chr5:23509579 3'AG 23509579 Downstream 50bp 2158 chr5 23509628 23509628 1 + G A rs186504490 23509628 + 23509608 23509648 41 ATACTTCACCAAGGAAGAATGGGCAGAGATGGGAGACTGGG ATACTTCACCAAGGAAGAATAGGCAGAGATGGGAGACTGGG Direct Loss 0.960082723208241 0 NA NA prediction 0.920165446416482 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509628 chr5:23509628 stopgain 0.999 0 21 hm7G_associated_SNPs_2193 0 0 0 0 2 PRDM9 chr5:23509702 5'GT 23509702 Upstream 75bp 2159 chr2 233546325 233546325 1 + G A SKCM 233546325 + 233546305 233546345 41 TGTCATCGGCCAGTAAGTTTGAAGCAGAGTTGAAAGCTGAG TGTCATCGGCCAGTAAGTTTAAAGCAGAGTTGAAAGCTGAG Direct Loss 0.960042661294083 0 NA NA prediction 0.920085322588166 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233546325 chr2:233546325 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2198 0 0 1 0 1 EFHD1 chr2:233546295 3'AG 233546295 Downstream 31bp 2160 chr3 9982847 9982847 1 + G T HNSC 9982847 + 9982827 9982867 41 CCTGAGGAATCAAACTGTTTGCAATGCAAGAAGGGCTGGGC CCTGAGGAATCAAACTGTTTTCAATGCAAGAAGGGCTGGGC Direct Loss 0.960024094810478 0 NA NA prediction 0.920048189620956 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9982847 chr3:9982847 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_2199 0 0 1 3 2 CRELD1 chr3:9982795 3'AG 9982795 Downstream 53bp 2161 chr3 9982847 9982847 1 + G T HNSC 9982847 + 9982827 9982867 41 CCTGAGGAATCAAACTGTTTGCAATGCAAGAAGGGCTGGGC CCTGAGGAATCAAACTGTTTTCAATGCAAGAAGGGCTGGGC Direct Loss 0.960024094810478 0 NA NA prediction 0.920048189620956 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9982847 chr3:9982847 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_2199 0 0 1 3 2 CRELD1 chr3:9982890 5'GT 9982890 Upstream 44bp 2162 chr7 5923591 5923591 1 + G A LUSC 5923591 + 5923571 5923611 41 AAACCAAGTCCTTGATGGCTGCGGCGGATAATGATGGAGAT AAACCAAGTCCTTGATGGCTACGGCGGATAATGATGGAGAT Direct Loss 0.960008090100032 0 NA NA prediction 0.920016180200065 Functional Loss - OCM ENSG00000122543 CDS Human protein_coding chr7:5923591 chr7:5923591 nonsynonymous SNV 0.532 4 21 hm7G_associated_SNPs_2200 0 0 0 0 1 OCM chr7:5923521 3'AG 5923521 Downstream 71bp 2163 chr16 29830913 29830913 1 + G A GBM 29830913 + 29830893 29830933 41 CAGAAACGGGAGGCCCGCCTGGACAAGGTGCTGTCGGACAT CAGAAACGGGAGGCCCGCCTAGACAAGGTGCTGTCGGACAT Direct Loss 0.959992710306514 0 NA NA prediction 0.919985420613028 Functional Loss - PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29830913 chr16:29830913 synonymous SNV . 0 21 hm7G_associated_SNPs_2202 0 0 1 0 1 PAGR1 chr16:29830876 3'AG 29830876 Downstream 38bp 2164 chr18 10550097 10550097 1 + G C LUSC 10550097 + 10550077 10550117 41 GCTAAGCTGGGCCTGAGTTTGGTGGTTCCAGGAGGGGGAAT GCTAAGCTGGGCCTGAGTTTCGTGGTTCCAGGAGGGGGAAT Direct Loss 0.959989850949034 0 NA NA prediction 0.919979701898068 Functional Loss - NAPG ENSG00000134265 CDS Human protein_coding chr18:10550097 chr18:10550097 nonsynonymous SNV 0.981 4 21 hm7G_associated_SNPs_2203 0 0 1 0 1 NAPG chr18:10550074 3'AG 10550074 Downstream 24bp 2165 chr6 24784350 24784350 1 + G C BLCA 24784350 + 24784330 24784370 41 AGTATTGGAAGGAAGTGGCAGAAAAACGGAGAAAGGCGCTG AGTATTGGAAGGAAGTGGCACAAAAACGGAGAAAGGCGCTG Direct Loss 0.959970204536918 0 NA NA prediction 0.919940409073837 Functional Loss - GMNN ENSG00000112312 CDS Human protein_coding chr6:24784350 chr6:24784350 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_2204 0 0 1 0 2 GMNN chr6:24784315 3'AG 24784315 Downstream 36bp 2166 chr6 24784350 24784350 1 + G C BLCA 24784350 + 24784330 24784370 41 AGTATTGGAAGGAAGTGGCAGAAAAACGGAGAAAGGCGCTG AGTATTGGAAGGAAGTGGCACAAAAACGGAGAAAGGCGCTG Direct Loss 0.959970204536918 0 NA NA prediction 0.919940409073837 Functional Loss - GMNN ENSG00000112312 CDS Human protein_coding chr6:24784350 chr6:24784350 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_2204 0 0 1 0 2 GMNN chr6:24784397 5'GT 24784397 Upstream 48bp 2167 chr1 64125301 64125301 1 + G T UCEC 64125301 + 64125281 64125321 41 ATTGCTCTGAAAGTGTCCCAGCTGCAGGAGAGGACGGGACG ATTGCTCTGAAAGTGTCCCATCTGCAGGAGAGGACGGGACG Direct Loss 0.959964574940075 0 NA NA prediction 0.919929149880151 Functional Loss - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64125301 chr1:64125301 nonsynonymous SNV 0.856 2 21 hm7G_associated_SNPs_2205 0 0 0 0 1 PGM1 chr1:64125257 3'AG 64125257 Downstream 45bp 2168 chr10 95400276 95400276 1 + G A UCEC 95400276 + 95400256 95400296 41 CTTACCACAATTGGCGGCATGGGTTCAACGTGGGGCAGACC CTTACCACAATTGGCGGCATAGGTTCAACGTGGGGCAGACC Direct Loss 0.959964083967401 0 NA NA prediction 0.919928167934801 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400276 chr10:95400276 nonsynonymous SNV 0.961 4 21 hm7G_associated_SNPs_2206 0 0 0 0 2 PDE6C chr10:95400207 3'AG 95400207 Downstream 70bp 2169 chr10 95400276 95400276 1 + G A UCEC 95400276 + 95400256 95400296 41 CTTACCACAATTGGCGGCATGGGTTCAACGTGGGGCAGACC CTTACCACAATTGGCGGCATAGGTTCAACGTGGGGCAGACC Direct Loss 0.959964083967401 0 NA NA prediction 0.919928167934801 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400276 chr10:95400276 nonsynonymous SNV 0.961 4 21 hm7G_associated_SNPs_2206 0 0 0 0 2 PDE6C chr10:95400314 5'GT 95400314 Upstream 39bp 2170 chr12 52312836 52312836 1 + G C LUSC 52312836 + 52312816 52312856 41 GACCCCAGCTTTGAGGACATGAAGAAGGTGGTGTGTGTGGA GACCCCAGCTTTGAGGACATCAAGAAGGTGGTGTGTGTGGA Direct Loss 0.959955608747511 0 NA NA prediction 0.919911217495022 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52312836 chr12:52312836 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2208 0 0 0 0 2 ACVRL1 chr12:52312769 3'AG 52312769 Downstream 68bp 2171 chr12 52312836 52312836 1 + G C LUSC 52312836 + 52312816 52312856 41 GACCCCAGCTTTGAGGACATGAAGAAGGTGGTGTGTGTGGA GACCCCAGCTTTGAGGACATCAAGAAGGTGGTGTGTGTGGA Direct Loss 0.959955608747511 0 NA NA prediction 0.919911217495022 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52312836 chr12:52312836 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2208 0 0 0 0 2 ACVRL1 chr12:52312899 5'GT 52312899 Upstream 64bp 2172 chr19 39123290 39123290 1 + G A THYM 39123290 + 39123270 39123310 41 CAGCACATTGACCGCTGGCTGCTGGCCGAGATGCTCGGGGA CAGCACATTGACCGCTGGCTACTGGCCGAGATGCTCGGGGA Direct Loss 0.959917191189557 0 NA NA prediction 0.919834382379115 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39123290 chr19:39123290 synonymous SNV . 0 21 hm7G_associated_SNPs_2210 0 0 1 0 2 EIF3K chr19:39123241 3'AG 39123241 Downstream 50bp 2173 chr19 39123290 39123290 1 + G A THYM 39123290 + 39123270 39123310 41 CAGCACATTGACCGCTGGCTGCTGGCCGAGATGCTCGGGGA CAGCACATTGACCGCTGGCTACTGGCCGAGATGCTCGGGGA Direct Loss 0.959917191189557 0 NA NA prediction 0.919834382379115 Functional Loss - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39123290 chr19:39123290 synonymous SNV . 0 21 hm7G_associated_SNPs_2210 0 0 1 0 2 EIF3K chr19:39123318 5'GT 39123318 Upstream 29bp 2174 chr19 51919315 51919315 1 + G A UCEC 51919315 + 51919295 51919335 41 ACTCTGTTCTGCAGGACCCAGCTCAGTGTGGCAGGGGGCTG ACTCTGTTCTGCAGGACCCAACTCAGTGTGGCAGGGGGCTG Direct Loss 0.959916870961908 0 NA NA prediction 0.919833741923816 Functional Loss - LOC100129083;SIGLEC10 ENSG00000142512 CDS Human protein_coding chr19:51919315 chr19:51919315 synonymous SNV . 0 21 hm7G_associated_SNPs_2211 0 0 0 0 1 LOC100129083;SIGLEC10 chr19:51919386 5'GT 51919386 Upstream 72bp 2175 chr5 128442668 128442668 1 + G T LUAD 128442668 + 128442648 128442688 41 TGCATCCAACAAACTGCCCTGGAGCTAGTTGGCCGAGGAGT TGCATCCAACAAACTGCCCTTGAGCTAGTTGGCCGAGGAGT Direct Loss 0.959900413993092 0 NA NA prediction 0.919800827986184 Functional Loss - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128442668 chr5:128442668 synonymous SNV . 0 21 hm7G_associated_SNPs_2212 0 0 1 0 2 ISOC1 chr5:128442639 3'AG 128442639 Downstream 30bp 2176 chr5 128442668 128442668 1 + G T LUAD 128442668 + 128442648 128442688 41 TGCATCCAACAAACTGCCCTGGAGCTAGTTGGCCGAGGAGT TGCATCCAACAAACTGCCCTTGAGCTAGTTGGCCGAGGAGT Direct Loss 0.959900413993092 0 NA NA prediction 0.919800827986184 Functional Loss - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128442668 chr5:128442668 synonymous SNV . 0 21 hm7G_associated_SNPs_2212 0 0 1 0 2 ISOC1 chr5:128442755 5'GT 128442755 Upstream 88bp 2177 chr17 4722785 4722785 1 + G A rs1052751 4722785 + 4722765 4722805 41 GACAGTGAGCTGGCCGTGCTGATCGAGGACACAGAGACGGA GACAGTGAGCTGGCCGTGCTAATCGAGGACACAGAGACGGA Direct Loss 0.959880566618541 0 NA NA prediction 0.919761133237083 Functional Loss - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4722785 chr17:4722785 synonymous SNV . 0 21 hm7G_associated_SNPs_2213 0 0 1 0 3 PLD2 chr17:4722724 3'AG 4722724 Downstream 62bp 2178 chr17 4722785 4722785 1 + G A rs1052751 4722785 + 4722765 4722805 41 GACAGTGAGCTGGCCGTGCTGATCGAGGACACAGAGACGGA GACAGTGAGCTGGCCGTGCTAATCGAGGACACAGAGACGGA Direct Loss 0.959880566618541 0 NA NA prediction 0.919761133237083 Functional Loss - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4722785 chr17:4722785 synonymous SNV . 0 21 hm7G_associated_SNPs_2213 0 0 1 0 3 PLD2 chr17:4722844 5'GT 4722844 Upstream 60bp 2179 chr17 4722785 4722785 1 + G A rs1052751 4722785 + 4722765 4722805 41 GACAGTGAGCTGGCCGTGCTGATCGAGGACACAGAGACGGA GACAGTGAGCTGGCCGTGCTAATCGAGGACACAGAGACGGA Direct Loss 0.959880566618541 0 NA NA prediction 0.919761133237083 Functional Loss - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4722785 chr17:4722785 synonymous SNV . 0 21 hm7G_associated_SNPs_2213 0 0 1 0 3 PLD2 chr17:4722877 5'GT 4722877 Upstream 93bp 2180 chr16 56693039 56693039 1 + G A SARC 56693039 + 56693019 56693059 41 GTGTGCCCAGGGCTGTGTTTGCAAAGGGGCGTCAGAGAAGT GTGTGCCCAGGGCTGTGTTTACAAAGGGGCGTCAGAGAAGT Direct Loss 0.959865569606071 0 NA NA prediction 0.919731139212143 Functional Loss - MT1F ENSG00000198417 CDS Human protein_coding chr16:56693039 chr16:56693039 nonsynonymous SNV 0.009 1 21 hm7G_associated_SNPs_2214 0 0 1 0 1 MT1F chr16:56692985 3'AG 56692985 Downstream 55bp 2181 chr16 336885 336885 1 + G A SKCM 336885 + 336865 336905 41 GAGACTTTCTCCAAGTTCCTGGACAACGGGGGCGTGCTGCC GAGACTTTCTCCAAGTTCCTAGACAACGGGGGCGTGCTGCC Direct Loss 0.959854919992889 0 NA NA prediction 0.919709839985778 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336885 chr16:336885 synonymous SNV . 0 21 hm7G_associated_SNPs_2215 0 0 0 0 2 PDIA2 chr16:336835 3'AG 336835 Downstream 51bp 2182 chr16 336885 336885 1 + G A SKCM 336885 + 336865 336905 41 GAGACTTTCTCCAAGTTCCTGGACAACGGGGGCGTGCTGCC GAGACTTTCTCCAAGTTCCTAGACAACGGGGGCGTGCTGCC Direct Loss 0.959854919992889 0 NA NA prediction 0.919709839985778 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336885 chr16:336885 synonymous SNV . 0 21 hm7G_associated_SNPs_2215 0 0 0 0 2 PDIA2 chr16:336945 5'GT 336945 Upstream 61bp 2183 chr7 55492997 55492997 1 + G T READ 55492997 + 55492977 55493017 41 GCCATGGAGTGTAGCGATGTGATTTGGCAGCGAGGTTTGCT GCCATGGAGTGTAGCGATGTTATTTGGCAGCGAGGTTTGCT Direct Loss 0.959850758617651 0 NA NA prediction 0.919701517235302 Functional Loss - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55492997 chr7:55492997 synonymous SNV . 0 21 hm7G_associated_SNPs_2216 0 0 1 0 1 LANCL2 chr7:55492947 3'AG 55492947 Downstream 51bp 2184 chr14 21571307 21571307 1 + G A SARC 21571307 + 21571287 21571327 41 CTGGTTTTCAGGGCTTCTCTGAGTTGGAAGAGGTTCCTGGT CTGGTTTTCAGGGCTTCTCTAAGTTGGAAGAGGTTCCTGGT Direct Loss 0.959840370315019 0 NA NA prediction 0.919680740630039 Functional Loss - TMEM253 ENSG00000232070 CDS Human protein_coding chr14:21571307 chr14:21571307 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_2218 0 0 0 0 1 TMEM253 chr14:21571298 3'AG 21571298 Downstream 10bp 2185 chr5 147594478 147594478 1 + G A LUSC 147594478 + 147594458 147594498 41 TTTTTTGTAGGAAAAGTGGTGGAAAGATTAGCCTAAAGCAT TTTTTTGTAGGAAAAGTGGTAGAAAGATTAGCCTAAAGCAT Direct Loss 0.959840084267488 0 NA NA prediction 0.919680168534976 Functional Loss - SPINK6 ENSG00000178172 CDS Human protein_coding chr5:147594478 chr5:147594478 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_2219 0 0 0 0 1 SPINK6 chr5:147594468 3'AG 147594468 Downstream 11bp 2186 chr5 157178442 157178442 1 + G A BLCA 157178442 + 157178422 157178462 41 AACTCCATCGCTGTATCCGTGAGGGGGTGAAGGTGAATGTT AACTCCATCGCTGTATCCGTAAGGGGGTGAAGGTGAATGTT Direct Loss 0.959837973373715 0 NA NA prediction 0.919675946747429 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178442 chr5:157178442 nonsynonymous SNV 0.966 3 21 hm7G_associated_SNPs_2220 0 0 1 0 2 LSM11 chr5:157178398 3'AG 157178398 Downstream 45bp 2187 chr5 157178442 157178442 1 + G A BLCA 157178442 + 157178422 157178462 41 AACTCCATCGCTGTATCCGTGAGGGGGTGAAGGTGAATGTT AACTCCATCGCTGTATCCGTAAGGGGGTGAAGGTGAATGTT Direct Loss 0.959837973373715 0 NA NA prediction 0.919675946747429 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178442 chr5:157178442 nonsynonymous SNV 0.966 3 21 hm7G_associated_SNPs_2220 0 0 1 0 2 LSM11 chr5:157178537 5'GT 157178537 Upstream 96bp 2188 chr17 70118866 70118866 1 + G A CESC 70118866 + 70118846 70118886 41 CCCGCCCCGAGCAGACTTCTGAACGAGAGCGAGAAGCGGCC CCCGCCCCGAGCAGACTTCTAAACGAGAGCGAGAAGCGGCC Direct Loss 0.959837689341898 0 NA NA prediction 0.919675378683796 Functional Loss - SOX9 ENSG00000125398 CDS Human protein_coding chr17:70118866 chr17:70118866 synonymous SNV . 0 21 hm7G_associated_SNPs_2221 0 0 1 0 1 SOX9 chr17:70118860 3'AG 70118860 Downstream 7bp 2189 chr19 52723042 52723042 1 + G T LUSC 52723042 + 52723022 52723062 41 TCCCTGCTCCCTGCCATTGTGGAGCTGGCTGAGGACGCCAA TCCCTGCTCCCTGCCATTGTTGAGCTGGCTGAGGACGCCAA Direct Loss 0.959835425341312 0 NA NA prediction 0.919670850682623 Functional Loss - PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52723042 chr19:52723042 synonymous SNV . 0 21 hm7G_associated_SNPs_2222 0 0 1 0 2 PPP2R1A chr19:52722944 3'AG 52722944 Downstream 99bp 2190 chr19 52723042 52723042 1 + G T LUSC 52723042 + 52723022 52723062 41 TCCCTGCTCCCTGCCATTGTGGAGCTGGCTGAGGACGCCAA TCCCTGCTCCCTGCCATTGTTGAGCTGGCTGAGGACGCCAA Direct Loss 0.959835425341312 0 NA NA prediction 0.919670850682623 Functional Loss - PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52723042 chr19:52723042 synonymous SNV . 0 21 hm7G_associated_SNPs_2222 0 0 1 0 2 PPP2R1A chr19:52723117 5'GT 52723117 Upstream 76bp 2191 chr12 56495375 56495375 1 + G A BLCA 56495375 + 56495355 56495395 41 TCAGTTCTGTCCTGGGTACTGAAGAAGAAGATGAAGATGAG TCAGTTCTGTCCTGGGTACTAAAGAAGAAGATGAAGATGAG Direct Loss 0.959826742337657 0 NA NA prediction 0.919653484675314 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56495375 chr12:56495375 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2223 0 0 0 0 1 ERBB3 chr12:56495313 3'AG 56495313 Downstream 63bp 2192 chr19 3586531 3586531 1 + G T PRAD 3586531 + 3586511 3586551 41 AACAGCCACAAAGTGGACATGCAGAAGCTCCTGGGGGGTCA AACAGCCACAAAGTGGACATTCAGAAGCTCCTGGGGGGTCA Direct Loss 0.959817224364529 0 NA NA prediction 0.919634448729058 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3586531 chr19:3586531 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_2224 0 0 0 0 1 GIPC3 chr19:3586493 3'AG 3586493 Downstream 39bp 2193 chr2 101619209 101619209 1 + G A LAML 101619209 + 101619189 101619229 41 AGAAGAAAAAGGGCCGTTCTGCCATCAACGAAGTGGTAACC AGAAGAAAAAGGGCCGTTCTACCATCAACGAAGTGGTAACC Direct Loss 0.959806215358266 0 NA NA prediction 0.919612430716533 Functional Loss - RPL31 ENSG00000071082 CDS Human protein_coding chr2:101619209 chr2:101619209 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2226 0 0 1 0 1 RPL31 chr2:101619164 3'AG 101619164 Downstream 46bp 2194 chr1 207041890 207041890 1 + G A UCEC 207041890 + 207041870 207041910 41 ACTAGACATTCTTCTGCAATGGATGGAGGAGACAGAATAGG ACTAGACATTCTTCTGCAATAGATGGAGGAGACAGAATAGG Direct Loss 0.95980573461338 0 NA NA prediction 0.919611469226761 Functional Loss - IL20 ENSG00000162891 CDS Human protein_coding chr1:207041890 chr1:207041890 stopgain 0.999 1 21 hm7G_associated_SNPs_2227 0 0 0 0 1 IL20 chr1:207041832 3'AG 207041832 Downstream 59bp 2195 chr12 15132137 15132137 1 + G A COAD 15132137 + 15132117 15132157 41 GGAGATGACATTCCAGGAATGGAGGGGCTAGGAACAGGTAA GGAGATGACATTCCAGGAATAGAGGGGCTAGGAACAGGTAA Direct Loss 0.959788530123451 0 NA NA prediction 0.919577060246901 Functional Loss - PDE6H ENSG00000139053 CDS Human protein_coding chr12:15132137 chr12:15132137 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2228 0 0 0 0 2 PDE6H chr12:15132113 3'AG 15132113 Downstream 25bp 2196 chr12 15132137 15132137 1 + G A COAD 15132137 + 15132117 15132157 41 GGAGATGACATTCCAGGAATGGAGGGGCTAGGAACAGGTAA GGAGATGACATTCCAGGAATAGAGGGGCTAGGAACAGGTAA Direct Loss 0.959788530123451 0 NA NA prediction 0.919577060246901 Functional Loss - PDE6H ENSG00000139053 CDS Human protein_coding chr12:15132137 chr12:15132137 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2228 0 0 0 0 2 PDE6H chr12:15132153 5'GT 15132153 Upstream 17bp 2197 chr1 156594414 156594414 1 + G A BLCA 156594414 + 156594394 156594434 41 TTGGACCGAGGGTCTGGACTGGTGTAACGCGGGCTGGCTGC TTGGACCGAGGGTCTGGACTAGTGTAACGCGGGCTGGCTGC Direct Loss 0.959785886309082 0 NA NA prediction 0.919571772618164 Functional Loss - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594414 chr1:156594414 stopgain 0.851 1 21 hm7G_associated_SNPs_2229 0 0 1 0 1 HAPLN2 chr1:156594393 3'AG 156594393 Downstream 22bp 2198 chr9 32784212 32784212 1 + G T LIHC 32784212 + 32784192 32784232 41 ATGACATTAACCCGAGGACTGGGCTGGTGGTGGCCCTGGTC ATGACATTAACCCGAGGACTTGGCTGGTGGTGGCCCTGGTC Direct Loss 0.959762025813073 0 NA NA prediction 0.919524051626146 Functional Loss - TMEM215 ENSG00000188133 CDS Human protein_coding chr9:32784212 chr9:32784212 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2230 0 0 0 0 1 TMEM215 chr9:32784124 3'AG 32784124 Downstream 89bp 2199 chr3 128993751 128993751 1 + G A GBM 128993751 + 128993731 128993771 41 ACTGAACTTCGAAGCAGCCTGGGATGAGGTAGGGGATGAAT ACTGAACTTCGAAGCAGCCTAGGATGAGGTAGGGGATGAAT Direct Loss 0.959756514442136 0 NA NA prediction 0.919513028884271 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128993751 chr3:128993751 stopgain 1.000 1 21 hm7G_associated_SNPs_2231 0 0 1 0 2 COPG1 chr3:128993681 3'AG 128993681 Downstream 71bp 2200 chr3 128993751 128993751 1 + G A GBM 128993751 + 128993731 128993771 41 ACTGAACTTCGAAGCAGCCTGGGATGAGGTAGGGGATGAAT ACTGAACTTCGAAGCAGCCTAGGATGAGGTAGGGGATGAAT Direct Loss 0.959756514442136 0 NA NA prediction 0.919513028884271 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128993751 chr3:128993751 stopgain 1.000 1 21 hm7G_associated_SNPs_2231 0 0 1 0 2 COPG1 chr3:128993819 5'GT 128993819 Upstream 69bp 2201 chr1 173454617 173454617 1 + G A BLCA 173454617 + 173454597 173454637 41 TGGATCCAGCAGAGAAGGATGAAAAGGGCATGCCTGTGACA TGGATCCAGCAGAGAAGGATAAAAAGGGCATGCCTGTGACA Direct Loss 0.959753516367959 0 NA NA prediction 0.919507032735917 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454617 chr1:173454617 nonsynonymous SNV 0.948 1 21 hm7G_associated_SNPs_2232 0 0 1 0 1 PRDX6 chr1:173454646 5'GT 173454646 Upstream 30bp 2202 chrX 13612981 13612981 1 + G T LIHC 13612981 + 13612961 13613001 41 GCGAACCTGGATGTAAGTTTGGTGAGTGCGTGGGACCAAAC GCGAACCTGGATGTAAGTTTTGTGAGTGCGTGGGACCAAAC Direct Loss 0.959732937208317 0 NA NA prediction 0.919465874416634 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13612981 chrX:13612981 nonsynonymous SNV 0.994 5 21 hm7G_associated_SNPs_2233 0 0 0 0 2 EGFL6 chrX:13612955 3'AG 13612955 Downstream 27bp 2203 chrX 13612981 13612981 1 + G T LIHC 13612981 + 13612961 13613001 41 GCGAACCTGGATGTAAGTTTGGTGAGTGCGTGGGACCAAAC GCGAACCTGGATGTAAGTTTTGTGAGTGCGTGGGACCAAAC Direct Loss 0.959732937208317 0 NA NA prediction 0.919465874416634 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13612981 chrX:13612981 nonsynonymous SNV 0.994 5 21 hm7G_associated_SNPs_2233 0 0 0 0 2 EGFL6 chrX:13613047 5'GT 13613047 Upstream 67bp 2204 chr16 3569995 3569995 1 + G A CESC 3569995 + 3569975 3570015 41 GAAAAGAGAAAATTAGAACTGGAAAGAAATCGGAAGCGACT GAAAAGAGAAAATTAGAACTAGAAAGAAATCGGAAGCGACT Direct Loss 0.959704813048544 0 NA NA prediction 0.919409626097089 Functional Loss - CLUAP1 ENSG00000103351 CDS Human protein_coding chr16:3569995 chr16:3569995 synonymous SNV . 0 21 hm7G_associated_SNPs_2234 0 0 0 0 1 CLUAP1 chr16:3570036 5'GT 3570036 Upstream 42bp 2205 chr7 103008365 103008365 1 + G A UCEC 103008365 + 103008345 103008385 41 TGCTGAGATTAGAAGCGTCTGCACAGAGGCTGGTATGTTTG TGCTGAGATTAGAAGCGTCTACACAGAGGCTGGTATGTTTG Direct Loss 0.959703593741121 0 NA NA prediction 0.919407187482242 Functional Loss - PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103008365 chr7:103008365 nonsynonymous SNV 0.989 5 21 hm7G_associated_SNPs_2235 0 0 1 0 1 PSMC2 chr7:103008344 3'AG 103008344 Downstream 22bp 2206 chr20 61428574 61428574 1 + G T HNSC 61428574 + 61428554 61428594 41 CTGAGCACCATGTACGACATGCAGGCGCTGGTGAGCCCAAC CTGAGCACCATGTACGACATTCAGGCGCTGGTGAGCCCAAC Direct Loss 0.959690978750225 0 NA NA prediction 0.919381957500449 Functional Loss - MRGBP ENSG00000101189 CDS Human protein_coding chr20:61428574 chr20:61428574 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2236 0 0 1 0 1 MRGBP chr20:61428583 5'GT 61428583 Upstream 10bp 2207 chr3 190967857 190967857 1 + G T SARC 190967857 + 190967837 190967877 41 ATCATCCAAAAAGGCGATTTGGTATCCCCATGGATCGGATT ATCATCCAAAAAGGCGATTTTGTATCCCCATGGATCGGATT Direct Loss 0.959690056196563 0 NA NA prediction 0.919380112393126 Functional Loss - OSTN ENSG00000188729 CDS Human protein_coding chr3:190967857 chr3:190967857 nonsynonymous SNV 0.926 4 21 hm7G_associated_SNPs_2237 0 0 1 0 1 OSTN chr3:190967826 3'AG 190967826 Downstream 32bp 2208 chr5 170883549 170883549 1 + G A LUAD 170883549 + 170883529 170883569 41 TCTCTCCCCTGCAGCCCGATGGCACCAGCAAGGAGTGTGTG TCTCTCCCCTGCAGCCCGATAGCACCAGCAAGGAGTGTGTG Direct Loss 0.959687855995684 0 NA NA prediction 0.919375711991368 Functional Loss - FGF18 ENSG00000156427 CDS Human protein_coding chr5:170883549 chr5:170883549 nonsynonymous SNV 0.973 2 21 hm7G_associated_SNPs_2238 0 0 0 0 1 FGF18 chr5:170883543 3'AG 170883543 Downstream 7bp 2209 chr1 16778338 16778338 1 + G A GBM 16778338 + 16778318 16778358 41 CTCTTCCCTCTTTAGAACATGAAGAAGAAGGAAGGAGCAGC CTCTTCCCTCTTTAGAACATAAAGAAGAAGGAAGGAGCAGC Direct Loss 0.95964718166887 0 NA NA prediction 0.91929436333774 Functional Loss - NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778338 chr1:16778338 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_2239 0 0 1 0 1 NECAP2 chr1:16778333 3'AG 16778333 Downstream 6bp 2210 chr7 129948157 129948157 1 + G A COAD 129948157 + 129948137 129948177 41 GCTTTTTCAGAACCGATTATGGAGGAAGACGCGGTCCCGAA GCTTTTTCAGAACCGATTATAGAGGAAGACGCGGTCCCGAA Direct Loss 0.959627745140595 0 NA NA prediction 0.91925549028119 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948157 chr7:129948157 stopgain 0.991 1 21 hm7G_associated_SNPs_2240 0 0 0 0 2 CPA4 chr7:129948147 3'AG 129948147 Downstream 11bp 2211 chr7 129948157 129948157 1 + G A COAD 129948157 + 129948137 129948177 41 GCTTTTTCAGAACCGATTATGGAGGAAGACGCGGTCCCGAA GCTTTTTCAGAACCGATTATAGAGGAAGACGCGGTCCCGAA Direct Loss 0.959627745140595 0 NA NA prediction 0.91925549028119 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948157 chr7:129948157 stopgain 0.991 1 21 hm7G_associated_SNPs_2240 0 0 0 0 2 CPA4 chr7:129948237 5'GT 129948237 Upstream 81bp 2212 chr10 64893233 64893233 1 + G A UCEC 64893233 + 64893213 64893253 41 CCGCTTACCCCGGGGTCTATGGAAGTAATGGAAGGACCCCT CCGCTTACCCCGGGGTCTATAGAAGTAATGGAAGGACCCCT Direct Loss 0.959616914065085 0 NA NA prediction 0.919233828130171 Functional Loss - NRBF2 ENSG00000148572 CDS Human protein_coding chr10:64893233 chr10:64893233 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2241 0 0 1 0 1 NRBF2 chr10:64893260 5'GT 64893260 Upstream 28bp 2213 chr11 126201343 126201343 1 + G A CESC 126201343 + 126201323 126201363 41 CCTGCCACAGAGAAACACCTGCAGAAGTACCTGCGCCAGGA CCTGCCACAGAGAAACACCTACAGAAGTACCTGCGCCAGGA Direct Loss 0.959611853923403 0 NA NA prediction 0.919223707846806 Functional Loss - DCPS ENSG00000110063 CDS Human protein_coding chr11:126201343 chr11:126201343 synonymous SNV . 0 21 hm7G_associated_SNPs_2242 0 0 0 0 1 DCPS chr11:126201300 3'AG 126201300 Downstream 44bp 2214 chr6 160218374 160218374 1 + G T UCEC 160218374 + 160218354 160218394 41 CACTTGTGGAGCATCAGAATGGCAAGGTTGTGGTTTCGGCC CACTTGTGGAGCATCAGAATTGCAAGGTTGTGGTTTCGGCC Direct Loss 0.959597486459266 0 NA NA prediction 0.919194972918533 Functional Loss - MRPL18 ENSG00000112110 CDS Human protein_coding chr6:160218374 chr6:160218374 nonsynonymous SNV 0.608 4 21 hm7G_associated_SNPs_2243 0 0 1 0 1 MRPL18 chr6:160218319 3'AG 160218319 Downstream 56bp 2215 chr4 184366790 184366790 1 + G A HNSC 184366790 + 184366770 184366810 41 GATGAACTGGTTGCCAAGGTGAAGAAAAGAGGGATATCGAG GATGAACTGGTTGCCAAGGTAAAGAAAAGAGGGATATCGAG Direct Loss 0.959566120475423 0 NA NA prediction 0.919132240950846 Functional Loss - CDKN2AIP ENSG00000168564 CDS Human protein_coding chr4:184366790 chr4:184366790 synonymous SNV . 0 21 hm7G_associated_SNPs_2244 0 0 0 0 1 CDKN2AIP chr4:184366818 5'GT 184366818 Upstream 29bp 2216 chr2 71376999 71376999 1 + G A rs6574 71376999 + 71376979 71377019 41 GGTGTTTTTAATTGCAGGATGAAGGTAAAGACAAGGCCTTA GGTGTTTTTAATTGCAGGATAAAGGTAAAGACAAGGCCTTA Direct Loss 0.959558259021377 0 NA NA prediction 0.919116518042754 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71376999 chr2:71376999 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2245 0 0 1 0 1 MPHOSPH10 chr2:71376996 3'AG 71376996 Downstream 4bp 2217 chr16 90103657 90103657 1 + G A BLCA 90103657 + 90103637 90103677 41 CAGGAGCAGATGGAGGACATGCGGAAGAAGGAGGACCACCT CAGGAGCAGATGGAGGACATACGGAAGAAGGAGGACCACCT Direct Loss 0.959550684619588 0 NA NA prediction 0.919101369239176 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90103657 chr16:90103657 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2246 0 0 1 0 1 GAS8 chr16:90103640 3'AG 90103640 Downstream 18bp 2218 chr1 160100050 160100050 1 + G A SKCM 160100050 + 160100030 160100070 41 GCCTTTCAAAATGCCTACATGGAGCTGGGGGGACTTGGGGA GCCTTTCAAAATGCCTACATAGAGCTGGGGGGACTTGGGGA Direct Loss 0.959541560995581 0 NA NA prediction 0.919083121991161 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160100050 chr1:160100050 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2247 0 0 0 0 1 ATP1A2 chr1:160100081 5'GT 160100081 Upstream 32bp 2219 chrX 100666999 100666999 1 + G A CESC 100666999 + 100666979 100667019 41 GATGCTGAGCACGGAAGGCAGGGAGGGGTTCGTGGTGAAGG GATGCTGAGCACGGAAGGCAAGGAGGGGTTCGTGGTGAAGG Direct Loss 0.959539179766689 0 NA NA prediction 0.919078359533378 Functional Loss - HNRNPH2 ENSG00000126945 CDS Human protein_coding chrX:100666999 chrX:100666999 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2248 0 0 1 0 1 RPL36A-HNRNPH2 chrX:100666924 3'AG 100666924 Downstream 76bp 2220 chr1 54371889 54371889 1 + G A rs201420507 54371889 + 54371869 54371909 41 CCTGTGGTGGTGGACACCATGCAGAACCAGAGCAGCCAGCT CCTGTGGTGGTGGACACCATACAGAACCAGAGCAGCCAGCT Direct Loss 0.959488496344028 0 NA NA prediction 0.918976992688056 Functional Loss - DIO1 ENSG00000211452 CDS Human protein_coding chr1:54371889 chr1:54371889 nonsynonymous SNV 0.954 4 21 hm7G_associated_SNPs_2250 0 0 0 2 1 DIO1 chr1:54371967 5'GT 54371967 Upstream 79bp 2221 chr5 140084144 140084144 1 + G A READ 140084144 + 140084124 140084164 41 TTTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGT TTTGAGGAAAGGATGAAGGAACTCAGAGAAGAGGTAAGGGT Direct Loss 0.959475094632768 0 NA NA prediction 0.918950189265535 Functional Loss - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084144 chr5:140084144 synonymous SNV . 0 21 hm7G_associated_SNPs_2251 0 0 1 0 1 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 13bp 2222 chrX 72674286 72674286 1 + G A rs762696148 72674286 + 72674266 72674306 41 AAGAAAATCTCCCAGTTTGAGAATAGTGGAGGCTCGGTGCA AAGAAAATCTCCCAGTTTGAAAATAGTGGAGGCTCGGTGCA Direct Loss 0.959419541175529 0 NA NA prediction 0.918839082351057 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72674286 chrX:72674286 synonymous SNV . 0 21 hm7G_associated_SNPs_2252 0 0 0 0 1 CDX4 chrX:72674215 3'AG 72674215 Downstream 72bp 2223 chr9 80919757 80919757 1 + G T LUAD 80919757 + 80919737 80919777 41 TGAAAGCAGGAAGGTGTGCTGACTATGTGGTGACAGGAGCT TGAAAGCAGGAAGGTGTGCTTACTATGTGGTGACAGGAGCT Direct Loss 0.959408584202718 0 NA NA prediction 0.918817168405437 Functional Loss - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80919757 chr9:80919757 nonsynonymous SNV 0.890 5 21 hm7G_associated_SNPs_2254 0 0 1 0 1 PSAT1 chr9:80919856 5'GT 80919856 Upstream 100bp 2224 chr4 109543328 109543328 1 + G A KIRC 109543328 + 109543308 109543348 41 TTGGGAAAGCACCAAAATCTGCATGTGGTGTGTGCCCAGGC TTGGGAAAGCACCAAAATCTACATGTGGTGTGTGCCCAGGC Direct Loss 0.959404624032621 0 NA NA prediction 0.918809248065243 Functional Loss - RPL34 ENSG00000109475 CDS Human protein_coding chr4:109543328 chr4:109543328 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_2255 0 0 1 0 2 RPL34 chr4:109543261 3'AG 109543261 Downstream 68bp 2225 chr4 109543328 109543328 1 + G A KIRC 109543328 + 109543308 109543348 41 TTGGGAAAGCACCAAAATCTGCATGTGGTGTGTGCCCAGGC TTGGGAAAGCACCAAAATCTACATGTGGTGTGTGCCCAGGC Direct Loss 0.959404624032621 0 NA NA prediction 0.918809248065243 Functional Loss - RPL34 ENSG00000109475 CDS Human protein_coding chr4:109543328 chr4:109543328 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_2255 0 0 1 0 2 RPL34 chr4:109543360 5'GT 109543360 Upstream 33bp 2226 chr1 172634827 172634827 1 + G C LUAD 172634827 + 172634807 172634847 41 ATGGAATTGTCCTGCTTTCTGGAGTGAAGTATAAGAAGGGT ATGGAATTGTCCTGCTTTCTCGAGTGAAGTATAAGAAGGGT Direct Loss 0.959400806290113 0 NA NA prediction 0.918801612580227 Functional Loss - FASLG ENSG00000117560 CDS Human protein_coding chr1:172634827 chr1:172634827 nonsynonymous SNV 0.986 5 21 hm7G_associated_SNPs_2256 0 0 0 0 1 FASLG chr1:172634762 3'AG 172634762 Downstream 66bp 2227 chr2 169940033 169940033 1 + G A STAD 169940033 + 169940013 169940053 41 CCAGTGTTGGAGGTCGCCTTGCAATCGTTGGAGGGGGCTAT CCAGTGTTGGAGGTCGCCTTACAATCGTTGGAGGGGGCTAT Direct Loss 0.959398325598289 0 NA NA prediction 0.918796651196578 Functional Loss - DHRS9 ENSG00000073737 CDS Human protein_coding chr2:169940033 chr2:169940033 nonsynonymous SNV 0.976 2 21 hm7G_associated_SNPs_2257 0 0 0 0 1 DHRS9 chr2:169940097 5'GT 169940097 Upstream 65bp 2228 chr14 77935506 77935506 1 + G C LUAD 77935506 + 77935486 77935526 41 GTCGAGGCATCCCTGCTCCTGAGGAAGAGCGGACGCGACAG GTCGAGGCATCCCTGCTCCTCAGGAAGAGCGGACGCGACAG Direct Loss 0.959393189630368 0 NA NA prediction 0.918786379260736 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77935506 chr14:77935506 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_2259 0 0 1 0 1 AHSA1 chr14:77935420 3'AG 77935420 Downstream 87bp 2229 chr5 1814479 1814479 1 + G A PRAD 1814479 + 1814459 1814499 41 GAAAACTTTGCCATTGATTTGATAGCAGAGCAGCCCGTGAG GAAAACTTTGCCATTGATTTAATAGCAGAGCAGCCCGTGAG Direct Loss 0.959376924598904 0 NA NA prediction 0.918753849197807 Functional Loss - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1814479 chr5:1814479 synonymous SNV . 0 21 hm7G_associated_SNPs_2261 0 0 1 0 2 NDUFS6 chr5:1814453 3'AG 1814453 Downstream 27bp 2230 chr5 1814479 1814479 1 + G A PRAD 1814479 + 1814459 1814499 41 GAAAACTTTGCCATTGATTTGATAGCAGAGCAGCCCGTGAG GAAAACTTTGCCATTGATTTAATAGCAGAGCAGCCCGTGAG Direct Loss 0.959376924598904 0 NA NA prediction 0.918753849197807 Functional Loss - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1814479 chr5:1814479 synonymous SNV . 0 21 hm7G_associated_SNPs_2261 0 0 1 0 2 NDUFS6 chr5:1814575 5'GT 1814575 Upstream 97bp 2231 chr19 4317224 4317224 1 + G A LUSC 4317224 + 4317204 4317244 41 GAACTTCCGTGTGAAGGCCTGTAACAAGGCAGTTGCAGGAG GAACTTCCGTGTGAAGGCCTATAACAAGGCAGTTGCAGGAG Direct Loss 0.959366293880887 0 NA NA prediction 0.918732587761775 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4317224 chr19:4317224 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2262 0 0 0 0 2 FSD1 chr19:4317179 3'AG 4317179 Downstream 46bp 2232 chr19 4317224 4317224 1 + G A LUSC 4317224 + 4317204 4317244 41 GAACTTCCGTGTGAAGGCCTGTAACAAGGCAGTTGCAGGAG GAACTTCCGTGTGAAGGCCTATAACAAGGCAGTTGCAGGAG Direct Loss 0.959366293880887 0 NA NA prediction 0.918732587761775 Functional Loss - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4317224 chr19:4317224 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2262 0 0 0 0 2 FSD1 chr19:4317277 5'GT 4317277 Upstream 54bp 2233 chr9 133370318 133370318 1 + G A SKCM 133370318 + 133370298 133370338 41 GCCAAGTCCCAGGAGCGAGTGGAAGGGAAAGTGCAGGTGTC GCCAAGTCCCAGGAGCGAGTAGAAGGGAAAGTGCAGGTGTC Direct Loss 0.959358140204187 0 NA NA prediction 0.918716280408375 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133370318 chr9:133370318 synonymous SNV . 0 21 hm7G_associated_SNPs_2264 0 0 0 0 2 ASS1 chr9:133370254 3'AG 133370254 Downstream 65bp 2234 chr9 133370318 133370318 1 + G A SKCM 133370318 + 133370298 133370338 41 GCCAAGTCCCAGGAGCGAGTGGAAGGGAAAGTGCAGGTGTC GCCAAGTCCCAGGAGCGAGTAGAAGGGAAAGTGCAGGTGTC Direct Loss 0.959358140204187 0 NA NA prediction 0.918716280408375 Functional Loss - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133370318 chr9:133370318 synonymous SNV . 0 21 hm7G_associated_SNPs_2264 0 0 0 0 2 ASS1 chr9:133370410 5'GT 133370410 Upstream 93bp 2235 chr14 100742831 100742831 1 + G T SARC 100742831 + 100742811 100742851 41 CTTTCTCTGTTTTAAGGGCTGCACAAAGATGTTCAGGGATA CTTTCTCTGTTTTAAGGGCTTCACAAAGATGTTCAGGGATA Direct Loss 0.959328645734988 0 NA NA prediction 0.918657291469976 Functional Loss - YY1 ENSG00000100811 CDS Human protein_coding chr14:100742831 chr14:100742831 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2267 0 0 1 0 1 YY1 chr14:100742827 3'AG 100742827 Downstream 5bp 2236 chr1 47282755 47282755 1 + G C rs59694031 47282755 + 47282735 47282775 41 AATGACTTATCTGACCATGTGCATCAAGGAGAGCTTCCGCC AATGACTTATCTGACCATGTCCATCAAGGAGAGCTTCCGCC Direct Loss 0.959315407820503 0 NA NA prediction 0.918630815641005 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47282755 chr1:47282755 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_2270 0 0 0 0 2 CYP4B1 chr1:47282720 3'AG 47282720 Downstream 36bp 2237 chr1 47282755 47282755 1 + G C rs59694031 47282755 + 47282735 47282775 41 AATGACTTATCTGACCATGTGCATCAAGGAGAGCTTCCGCC AATGACTTATCTGACCATGTCCATCAAGGAGAGCTTCCGCC Direct Loss 0.959315407820503 0 NA NA prediction 0.918630815641005 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47282755 chr1:47282755 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_2270 0 0 0 0 2 CYP4B1 chr1:47282853 5'GT 47282853 Upstream 99bp 2238 chr10 96701966 96701966 1 + G A SKCM 96701966 + 96701946 96701986 41 TAGGAATTGTTTTCAGCAATGGAAAGAAATGGAAGGAGATC TAGGAATTGTTTTCAGCAATAGAAAGAAATGGAAGGAGATC Direct Loss 0.959293508418168 0 NA NA prediction 0.918587016836335 Functional Loss - CYP2C9 ENSG00000138109 CDS Human protein_coding chr10:96701966 chr10:96701966 nonsynonymous SNV 0.194 3 21 hm7G_associated_SNPs_2271 0 0 0 0 1 CYP2C9 chr10:96701949 3'AG 96701949 Downstream 18bp 2239 chr17 29283435 29283435 1 + G A SKCM 29283435 + 29283415 29283455 41 AAGGAACAGCAGGAATGGCTGGAAAGTTTGCGGGGTGTCCT AAGGAACAGCAGGAATGGCTAGAAAGTTTGCGGGGTGTCCT Direct Loss 0.959284495492577 0 NA NA prediction 0.918568990985154 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29283435 chr17:29283435 synonymous SNV . 0 21 hm7G_associated_SNPs_2272 0 0 0 0 1 ADAP2 chr17:29283487 5'GT 29283487 Upstream 53bp 2240 chr19 57744009 57744009 1 + G A rs55710619 57744009 + 57743989 57744029 41 GGTGAGCTCTACAAGGAGCTGCAGAAAAGCGAGAAATTAGA GGTGAGCTCTACAAGGAGCTACAGAAAAGCGAGAAATTAGA Direct Loss 0.959279941196758 0 NA NA prediction 0.918559882393515 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57744009 chr19:57744009 synonymous SNV . 0 21 hm7G_associated_SNPs_2273 1 0 1 0 2 AURKC chr19:57743910 3'AG 57743910 Downstream 100bp 2241 chr19 57744009 57744009 1 + G A rs55710619 57744009 + 57743989 57744029 41 GGTGAGCTCTACAAGGAGCTGCAGAAAAGCGAGAAATTAGA GGTGAGCTCTACAAGGAGCTACAGAAAAGCGAGAAATTAGA Direct Loss 0.959279941196758 0 NA NA prediction 0.918559882393515 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57744009 chr19:57744009 synonymous SNV . 0 21 hm7G_associated_SNPs_2273 1 0 1 0 2 AURKC chr19:57744048 5'GT 57744048 Upstream 40bp 2242 chr9 101608327 101608327 1 + G T LUSC 101608327 + 101608307 101608347 41 CCTGAGGGCTGCATTGCTGTGGAAGCAGGAATGGATACCCT CCTGAGGGCTGCATTGCTGTTGAAGCAGGAATGGATACCCT Direct Loss 0.959271909747714 0 NA NA prediction 0.918543819495428 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101608327 chr9:101608327 synonymous SNV . 0 21 hm7G_associated_SNPs_2274 0 0 0 0 2 GALNT12 chr9:101608259 3'AG 101608259 Downstream 69bp 2243 chr9 101608327 101608327 1 + G T LUSC 101608327 + 101608307 101608347 41 CCTGAGGGCTGCATTGCTGTGGAAGCAGGAATGGATACCCT CCTGAGGGCTGCATTGCTGTTGAAGCAGGAATGGATACCCT Direct Loss 0.959271909747714 0 NA NA prediction 0.918543819495428 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101608327 chr9:101608327 synonymous SNV . 0 21 hm7G_associated_SNPs_2274 0 0 0 0 2 GALNT12 chr9:101608405 5'GT 101608405 Upstream 79bp 2244 chr3 111799834 111799834 1 + G A OV 111799834 + 111799814 111799854 41 TTTGACTGGCATTGTTAGCTGGGGACATGGAAGTGGACGAC TTTGACTGGCATTGTTAGCTAGGGACATGGAAGTGGACGAC Direct Loss 0.959260318021418 0 NA NA prediction 0.918520636042836 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111799834 chr3:111799834 stopgain 1.000 1 21 hm7G_associated_SNPs_2275 0 0 0 0 1 TMPRSS7 chr3:111799761 3'AG 111799761 Downstream 74bp 2245 chr15 34517842 34517842 1 + G C rs79609466 34517842 + 34517822 34517862 41 CAAGAGACAGACCGGATCCTGGTGGAGAAGGTACAGAGGTA CAAGAGACAGACCGGATCCTCGTGGAGAAGGTACAGAGGTA Direct Loss 0.959241589211503 0 NA NA prediction 0.918483178423006 Functional Loss - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517842 chr15:34517842 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_2276 0 0 1 0 1 EMC4 chr15:34517851 5'GT 34517851 Upstream 10bp 2246 chr15 101438341 101438341 1 + G A GBM 101438341 + 101438321 101438361 41 AGCAATCTGAAGCGGGTGACGCTGGAGCTGGGGGGGAAGAA AGCAATCTGAAGCGGGTGACACTGGAGCTGGGGGGGAAGAA Direct Loss 0.959225952507136 0 NA NA prediction 0.918451905014272 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101438341 chr15:101438341 synonymous SNV . 0 21 hm7G_associated_SNPs_2279 0 0 0 0 2 ALDH1A3 chr15:101438288 3'AG 101438288 Downstream 54bp 2247 chr15 101438341 101438341 1 + G A GBM 101438341 + 101438321 101438361 41 AGCAATCTGAAGCGGGTGACGCTGGAGCTGGGGGGGAAGAA AGCAATCTGAAGCGGGTGACACTGGAGCTGGGGGGGAAGAA Direct Loss 0.959225952507136 0 NA NA prediction 0.918451905014272 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101438341 chr15:101438341 synonymous SNV . 0 21 hm7G_associated_SNPs_2279 0 0 0 0 2 ALDH1A3 chr15:101438390 5'GT 101438390 Upstream 50bp 2248 chr6 108496068 108496068 1 + G T COAD 108496068 + 108496048 108496088 41 TCCGGTGGACAAGACGCACAGAAACCAGTGCAGGGCGTGTC TCCGGTGGACAAGACGCACATAAACCAGTGCAGGGCGTGTC Direct Loss 0.959190838776242 0 NA NA prediction 0.918381677552484 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108496068 chr6:108496068 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_2281 0 0 0 0 2 NR2E1 chr6:108496040 3'AG 108496040 Downstream 29bp 2249 chr6 108496068 108496068 1 + G T COAD 108496068 + 108496048 108496088 41 TCCGGTGGACAAGACGCACAGAAACCAGTGCAGGGCGTGTC TCCGGTGGACAAGACGCACATAAACCAGTGCAGGGCGTGTC Direct Loss 0.959190838776242 0 NA NA prediction 0.918381677552484 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108496068 chr6:108496068 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_2281 0 0 0 0 2 NR2E1 chr6:108496127 5'GT 108496127 Upstream 60bp 2250 chr20 18462382 18462382 1 + G T UCEC 18462382 + 18462362 18462402 41 GGCAGTGTAGATGGACACATGAAACTGTACAGGGCAGTCAA GGCAGTGTAGATGGACACATTAAACTGTACAGGGCAGTCAA Direct Loss 0.959187892014844 0 NA NA prediction 0.918375784029687 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462382 chr20:18462382 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_2282 0 0 1 2 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 73bp 2251 chr1 231406515 231406515 1 + G A BRCA 231406515 + 231406495 231406535 41 TGTGTGTAGATAATAAACCTGCTGAAGAAGTTGTCCCGGCC TGTGTGTAGATAATAAACCTACTGAAGAAGTTGTCCCGGCC Direct Loss 0.95918602245918 0 NA NA prediction 0.918372044918361 Functional Loss - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231406515 chr1:231406515 nonsynonymous SNV 0.519 0 21 hm7G_associated_SNPs_2283 0 0 1 0 1 GNPAT chr1:231406504 3'AG 231406504 Downstream 12bp 2252 chr5 68513659 68513659 1 + G T UCEC 68513659 + 68513639 68513679 41 TGCCCCTTCTCGGGGGTCATGATGGGCAGCAAGATGGCGTC TGCCCCTTCTCGGGGGTCATTATGGGCAGCAAGATGGCGTC Direct Loss 0.959181151410094 0 NA NA prediction 0.918362302820188 Functional Loss - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68513659 chr5:68513659 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_2285 0 0 1 0 1 MRPS36 chr5:68513698 5'GT 68513698 Upstream 40bp 2253 chr14 51347198 51347198 1 + G A UCEC 51347198 + 51347178 51347218 41 TCCCCAGCTGCCGGGGGGAAGATGCCAAGGGGAAGGACTGT TCCCCAGCTGCCGGGGGGAAAATGCCAAGGGGAAGGACTGT Direct Loss 0.959155114910043 0 NA NA prediction 0.918310229820085 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51347198 chr14:51347198 nonsynonymous SNV 0.043 0 21 hm7G_associated_SNPs_2286 0 0 0 1 2 ABHD12B chr14:51347170 3'AG 51347170 Downstream 29bp 2254 chr14 51347198 51347198 1 + G A UCEC 51347198 + 51347178 51347218 41 TCCCCAGCTGCCGGGGGGAAGATGCCAAGGGGAAGGACTGT TCCCCAGCTGCCGGGGGGAAAATGCCAAGGGGAAGGACTGT Direct Loss 0.959155114910043 0 NA NA prediction 0.918310229820085 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51347198 chr14:51347198 nonsynonymous SNV 0.043 0 21 hm7G_associated_SNPs_2286 0 0 0 1 2 ABHD12B chr14:51347289 5'GT 51347289 Upstream 92bp 2255 chr1 163318841 163318841 1 + G T LUAD 163318841 + 163318821 163318861 41 GAATTCAACAACTAAAAGATGCTGCTGAAAGGGAGAAACTG GAATTCAACAACTAAAAGATTCTGCTGAAAGGGAGAAACTG Direct Loss 0.959119654739664 0 NA NA prediction 0.918239309479327 Functional Loss - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163318841 chr1:163318841 nonsynonymous SNV 0.885 0 21 hm7G_associated_SNPs_2289 0 0 1 0 1 NUF2 chr1:163318870 5'GT 163318870 Upstream 30bp 2256 chr11 5013214 5013214 1 + G A LUAD 5013214 + 5013194 5013234 41 GATATAATCTGTTCCTGGTTGCAACTCATGAGATTGGGCAT GATATAATCTGTTCCTGGTTACAACTCATGAGATTGGGCAT Direct Loss 0.959115789315443 0 NA NA prediction 0.918231578630885 Functional Loss - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5013214 chr11:5013214 nonsynonymous SNV 0.858 4 21 hm7G_associated_SNPs_2290 0 0 0 0 1 MMP26 chr11:5013194 3'AG 5013194 Downstream 21bp 2257 chr11 117153890 117153890 1 + G A rs146262838 117153890 + 117153870 117153910 41 CTCGTCCAGCCCAGTGAGCTGCATCCAATGGCGTGTACCCA CTCGTCCAGCCCAGTGAGCTACATCCAATGGCGTGTACCCA Direct Loss 0.959105221473622 0 NA NA prediction 0.918210442947244 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117153890 chr11:117153890 synonymous SNV . 0 21 hm7G_associated_SNPs_2291 0 0 1 0 2 RNF214 chr11:117153831 3'AG 117153831 Downstream 60bp 2258 chr11 117153890 117153890 1 + G A rs146262838 117153890 + 117153870 117153910 41 CTCGTCCAGCCCAGTGAGCTGCATCCAATGGCGTGTACCCA CTCGTCCAGCCCAGTGAGCTACATCCAATGGCGTGTACCCA Direct Loss 0.959105221473622 0 NA NA prediction 0.918210442947244 Functional Loss - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117153890 chr11:117153890 synonymous SNV . 0 21 hm7G_associated_SNPs_2291 0 0 1 0 2 RNF214 chr11:117153926 5'GT 117153926 Upstream 37bp 2259 chr19 36245194 36245194 1 + G A UCEC 36245194 + 36245174 36245214 41 ACACTCATCTATCGCAACATGCAGCGCTGGAAACGCATCCG ACACTCATCTATCGCAACATACAGCGCTGGAAACGCATCCG Direct Loss 0.959085377436048 0 NA NA prediction 0.918170754872097 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36245194 chr19:36245194 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2293 0 0 1 0 2 LIN37 chr19:36245147 3'AG 36245147 Downstream 48bp 2260 chr19 36245194 36245194 1 + G A UCEC 36245194 + 36245174 36245214 41 ACACTCATCTATCGCAACATGCAGCGCTGGAAACGCATCCG ACACTCATCTATCGCAACATACAGCGCTGGAAACGCATCCG Direct Loss 0.959085377436048 0 NA NA prediction 0.918170754872097 Functional Loss - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36245194 chr19:36245194 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2293 0 0 1 0 2 LIN37 chr19:36245220 5'GT 36245220 Upstream 27bp 2261 chr21 40871755 40871755 1 + G T COAD 40871755 + 40871735 40871775 41 TCCTTTATGACCAGGGATCAGAGAAGGCTGAAGAAGGTGGA TCCTTTATGACCAGGGATCATAGAAGGCTGAAGAAGGTGGA Direct Loss 0.959058889382107 0 NA NA prediction 0.918117778764213 Functional Loss - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40871755 chr21:40871755 stopgain 0.995 0 21 hm7G_associated_SNPs_2294 0 0 1 0 2 SH3BGR;WRB-SH3BGR chr21:40871749 3'AG 40871749 Downstream 7bp 2262 chr21 40871755 40871755 1 + G T COAD 40871755 + 40871735 40871775 41 TCCTTTATGACCAGGGATCAGAGAAGGCTGAAGAAGGTGGA TCCTTTATGACCAGGGATCATAGAAGGCTGAAGAAGGTGGA Direct Loss 0.959058889382107 0 NA NA prediction 0.918117778764213 Functional Loss - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40871755 chr21:40871755 stopgain 0.995 0 21 hm7G_associated_SNPs_2294 0 0 1 0 2 SH3BGR;WRB-SH3BGR chr21:40871841 5'GT 40871841 Upstream 87bp 2263 chr19 12920908 12920908 1 + G A THYM 12920908 + 12920888 12920928 41 TTCGTGGACACCGTAGGGATGCCAGAGACATACCAGGCGCG TTCGTGGACACCGTAGGGATACCAGAGACATACCAGGCGCG Direct Loss 0.959046355468748 0 NA NA prediction 0.918092710937496 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12920908 chr19:12920908 nonsynonymous SNV 0.367 1 21 hm7G_associated_SNPs_2296 0 0 1 0 1 RNASEH2A chr19:12920885 3'AG 12920885 Downstream 24bp 2264 chr11 6631766 6631766 1 + G A UCEC 6631766 + 6631746 6631786 41 GTGTAAGCTCATGAAGATCTGCATGAATGAAGACCCTGCAA GTGTAAGCTCATGAAGATCTACATGAATGAAGACCCTGCAA Direct Loss 0.959011169417853 0 NA NA prediction 0.918022338835707 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6631766 chr11:6631766 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_2297 0 0 1 0 1 ILK chr11:6631693 3'AG 6631693 Downstream 74bp 2265 chr6 71298356 71298356 1 + G T LUAD 71298356 + 71298336 71298376 41 ATCCAGTGACCAAAGAAAAAGGTGGACCCAGGGGCCCAGAA ATCCAGTGACCAAAGAAAAATGTGGACCCAGGGGCCCAGAA Direct Loss 0.959002907241636 0 NA NA prediction 0.918005814483271 Functional Loss - SDHAF4 ENSG00000154079 CDS Human protein_coding chr6:71298356 chr6:71298356 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2299 0 0 1 0 1 SDHAF4 chr6:71298318 3'AG 71298318 Downstream 39bp 2266 chr2 220286073 220286073 1 + G A LUSC 220286073 + 220286053 220286093 41 CTCCTGCAGAACGATTCCCTGATGAGGCAGATGCGGGAATT CTCCTGCAGAACGATTCCCTAATGAGGCAGATGCGGGAATT Direct Loss 0.958997430475966 0 NA NA prediction 0.917994860951932 Functional Loss - DES ENSG00000175084 CDS Human protein_coding chr2:220286073 chr2:220286073 synonymous SNV . 0 21 hm7G_associated_SNPs_2300 0 0 0 0 1 DES chr2:220286062 3'AG 220286062 Downstream 12bp 2267 chr19 16339013 16339013 1 + G C LUAD 16339013 + 16338993 16339033 41 CACAGCCGCATCGAGTACATGATCAAGGTGCGTGGGCCGAG CACAGCCGCATCGAGTACATCATCAAGGTGCGTGGGCCGAG Direct Loss 0.958985190052297 0 NA NA prediction 0.917970380104594 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339013 chr19:16339013 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_2303 0 0 1 0 2 AP1M1 chr19:16338948 3'AG 16338948 Downstream 66bp 2268 chr19 16339013 16339013 1 + G C LUAD 16339013 + 16338993 16339033 41 CACAGCCGCATCGAGTACATGATCAAGGTGCGTGGGCCGAG CACAGCCGCATCGAGTACATCATCAAGGTGCGTGGGCCGAG Direct Loss 0.958985190052297 0 NA NA prediction 0.917970380104594 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339013 chr19:16339013 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_2303 0 0 1 0 2 AP1M1 chr19:16339019 5'GT 16339019 Upstream 7bp 2269 chr11 65562600 65562600 1 + G A SKCM 65562600 + 65562580 65562620 41 CTCACCTCAAGAAGATCCATGGTGTGCAGCAGAAGTACGCG CTCACCTCAAGAAGATCCATAGTGTGCAGCAGAAGTACGCG Direct Loss 0.958977664989114 0 NA NA prediction 0.917955329978227 Functional Loss - OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65562600 chr11:65562600 nonsynonymous SNV 0.032 1 21 hm7G_associated_SNPs_2304 0 0 0 0 1 OVOL1 chr11:65562517 3'AG 65562517 Downstream 84bp 2270 chr10 70520899 70520899 1 + G C BLCA 70520899 + 70520879 70520919 41 AGAAGGAGTTAGAGAAATCTGAAAAAGAAGAGGATGAGGAT AGAAGGAGTTAGAGAAATCTCAAAAAGAAGAGGATGAGGAT Direct Loss 0.95897698725153 0 NA NA prediction 0.917953974503059 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70520899 chr10:70520899 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_2305 0 0 1 0 1 CCAR1 chr10:70520949 5'GT 70520949 Upstream 51bp 2271 chr13 49795297 49795297 1 + G A SKCM 49795297 + 49795277 49795317 41 GCTCATCGGGCGGGAGCTGTGGAGCAGCCGGCGGCCGCTGC GCTCATCGGGCGGGAGCTGTAGAGCAGCCGGCGGCCGCTGC Direct Loss 0.958970284365298 0 NA NA prediction 0.917940568730596 Functional Loss - MLNR ENSG00000102539 CDS Human protein_coding chr13:49795297 chr13:49795297 stopgain 0.219 0 21 hm7G_associated_SNPs_2306 0 0 0 0 1 MLNR chr13:49795374 5'GT 49795374 Upstream 78bp 2272 chr14 74707946 74707946 1 + G A SARC 74707946 + 74707926 74707966 41 TCTGCTTTAAACCAGACCAAGAAACGGAAGAAGCGGCGACA TCTGCTTTAAACCAGACCAAAAAACGGAAGAAGCGGCGACA Direct Loss 0.95896633642497 0 NA NA prediction 0.917932672849939 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74707946 chr14:74707946 synonymous SNV . 0 21 hm7G_associated_SNPs_2307 0 0 0 0 2 VSX2 chr14:74707885 3'AG 74707885 Downstream 62bp 2273 chr14 74707946 74707946 1 + G A SARC 74707946 + 74707926 74707966 41 TCTGCTTTAAACCAGACCAAGAAACGGAAGAAGCGGCGACA TCTGCTTTAAACCAGACCAAAAAACGGAAGAAGCGGCGACA Direct Loss 0.95896633642497 0 NA NA prediction 0.917932672849939 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74707946 chr14:74707946 synonymous SNV . 0 21 hm7G_associated_SNPs_2307 0 0 0 0 2 VSX2 chr14:74707969 5'GT 74707969 Upstream 24bp 2274 chr5 137519714 137519714 1 + G A BLCA 137519714 + 137519694 137519734 41 CAGAAGAGTGGTGAACGGTTGAAGGAAGCAGGAAACATTAA CAGAAGAGTGGTGAACGGTTAAAGGAAGCAGGAAACATTAA Direct Loss 0.958950259345564 0 NA NA prediction 0.917900518691127 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137519714 chr5:137519714 synonymous SNV . 0 21 hm7G_associated_SNPs_2309 0 0 1 0 2 KIF20A chr5:137519651 3'AG 137519651 Downstream 64bp 2275 chr5 137519714 137519714 1 + G A BLCA 137519714 + 137519694 137519734 41 CAGAAGAGTGGTGAACGGTTGAAGGAAGCAGGAAACATTAA CAGAAGAGTGGTGAACGGTTAAAGGAAGCAGGAAACATTAA Direct Loss 0.958950259345564 0 NA NA prediction 0.917900518691127 Functional Loss - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137519714 chr5:137519714 synonymous SNV . 0 21 hm7G_associated_SNPs_2309 0 0 1 0 2 KIF20A chr5:137519794 5'GT 137519794 Upstream 81bp 2276 chr3 73114268 73114268 1 + G C BRCA 73114268 + 73114248 73114288 41 ACTGTACAGAAGAGGATGAAGAAGAGGATGAAGAGGAAGAA ACTGTACAGAAGAGGATGAACAAGAGGATGAAGAGGAAGAA Direct Loss 0.958941943814264 0 NA NA prediction 0.917883887628529 Functional Loss - PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73114268 chr3:73114268 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_2310 0 0 1 0 1 PPP4R2 chr3:73114292 5'GT 73114292 Upstream 25bp 2277 chr5 64084809 64084809 1 + G A PAAD 64084809 + 64084789 64084829 41 TACTTTCATTTGGAGAGGAAGCTGAGGAAGAAGAGGAGGAA TACTTTCATTTGGAGAGGAAACTGAGGAAGAAGAGGAGGAA Direct Loss 0.958939868955732 0 NA NA prediction 0.917879737911463 Functional Loss - CWC27 ENSG00000153015 CDS Human protein_coding chr5:64084809 chr5:64084809 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2312 0 0 1 0 2 CWC27 chr5:64084778 3'AG 64084778 Downstream 32bp 2278 chr5 64084809 64084809 1 + G A PAAD 64084809 + 64084789 64084829 41 TACTTTCATTTGGAGAGGAAGCTGAGGAAGAAGAGGAGGAA TACTTTCATTTGGAGAGGAAACTGAGGAAGAAGAGGAGGAA Direct Loss 0.958939868955732 0 NA NA prediction 0.917879737911463 Functional Loss - CWC27 ENSG00000153015 CDS Human protein_coding chr5:64084809 chr5:64084809 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2312 0 0 1 0 2 CWC27 chr5:64084847 5'GT 64084847 Upstream 39bp 2279 chr1 113212210 113212210 1 + G A UCEC 113212210 + 113212190 113212230 41 TTATTAAAATCATAGAGAATGCAGAAAATGAGTATCAGGTA TTATTAAAATCATAGAGAATACAGAAAATGAGTATCAGGTA Direct Loss 0.95892095744034 0 NA NA prediction 0.91784191488068 Functional Loss - CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113212210 chr1:113212210 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2313 0 0 0 0 2 CAPZA1 chr1:113212165 3'AG 113212165 Downstream 46bp 2280 chr1 113212210 113212210 1 + G A UCEC 113212210 + 113212190 113212230 41 TTATTAAAATCATAGAGAATGCAGAAAATGAGTATCAGGTA TTATTAAAATCATAGAGAATACAGAAAATGAGTATCAGGTA Direct Loss 0.95892095744034 0 NA NA prediction 0.91784191488068 Functional Loss - CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113212210 chr1:113212210 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2313 0 0 0 0 2 CAPZA1 chr1:113212227 5'GT 113212227 Upstream 18bp 2281 chr17 16336928 16336928 1 + G T LUSC 16336928 + 16336908 16336948 41 GATGGAGAATGGCTATTGGTGGTGCAGGAAGAAGCAGCGGG GATGGAGAATGGCTATTGGTTGTGCAGGAAGAAGCAGCGGG Direct Loss 0.958903004458133 0 NA NA prediction 0.917806008916267 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16336928 chr17:16336928 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_2314 0 0 0 0 2 TRPV2 chr17:16336888 3'AG 16336888 Downstream 41bp 2282 chr17 16336928 16336928 1 + G T LUSC 16336928 + 16336908 16336948 41 GATGGAGAATGGCTATTGGTGGTGCAGGAAGAAGCAGCGGG GATGGAGAATGGCTATTGGTTGTGCAGGAAGAAGCAGCGGG Direct Loss 0.958903004458133 0 NA NA prediction 0.917806008916267 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16336928 chr17:16336928 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_2314 0 0 0 0 2 TRPV2 chr17:16337012 5'GT 16337012 Upstream 85bp 2283 chr1 233807111 233807111 1 + G A SKCM 233807111 + 233807091 233807131 41 TTCAGAAAAATGTTCTATGTGAAGAAGGACAAGGACGAGGA TTCAGAAAAATGTTCTATGTAAAGAAGGACAAGGACGAGGA Direct Loss 0.958901898266903 0 NA NA prediction 0.917803796533806 Functional Loss - KCNK1 ENSG00000135750 CDS Human protein_coding chr1:233807111 chr1:233807111 synonymous SNV . 0 21 hm7G_associated_SNPs_2315 0 0 1 3 1 KCNK1 chr1:233807017 3'AG 233807017 Downstream 95bp 2284 chr10 74886466 74886466 1 + G A UCEC 74886466 + 74886446 74886486 41 AGACCATCCGCCGAGAAGTTGCAGAAGAGGTGGGATTGGAG AGACCATCCGCCGAGAAGTTACAGAAGAGGTGGGATTGGAG Direct Loss 0.958883204556788 0 NA NA prediction 0.917766409113576 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74886466 chr10:74886466 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2318 0 0 1 1 2 NUDT13 chr10:74886393 3'AG 74886393 Downstream 74bp 2285 chr10 74886466 74886466 1 + G A UCEC 74886466 + 74886446 74886486 41 AGACCATCCGCCGAGAAGTTGCAGAAGAGGTGGGATTGGAG AGACCATCCGCCGAGAAGTTACAGAAGAGGTGGGATTGGAG Direct Loss 0.958883204556788 0 NA NA prediction 0.917766409113576 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74886466 chr10:74886466 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2318 0 0 1 1 2 NUDT13 chr10:74886431 3'AG 74886431 Downstream 36bp 2286 chr17 27370279 27370279 1 + G A BLCA 27370279 + 27370259 27370299 41 GATCTCTGGGACGCCATTGTGATTGGGGCGGGGATCCAGGG GATCTCTGGGACGCCATTGTAATTGGGGCGGGGATCCAGGG Direct Loss 0.958845977661418 0 NA NA prediction 0.917691955322836 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27370279 chr17:27370279 synonymous SNV . 0 21 hm7G_associated_SNPs_2320 0 0 1 0 1 PIPOX chr17:27370357 5'GT 27370357 Upstream 79bp 2287 chr17 73515090 73515090 1 + G A BLCA 73515090 + 73515070 73515110 41 TTTGAGGTCTTCAGCCACCTGAAGAGGTTGGGTTATGTGGT TTTGAGGTCTTCAGCCACCTAAAGAGGTTGGGTTATGTGGT Direct Loss 0.95883849551593 0 NA NA prediction 0.91767699103186 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73515090 chr17:73515090 synonymous SNV . 0 21 hm7G_associated_SNPs_2321 0 0 1 0 3 TSEN54 chr17:73515076 3'AG 73515076 Downstream 15bp 2288 chr17 73515090 73515090 1 + G A BLCA 73515090 + 73515070 73515110 41 TTTGAGGTCTTCAGCCACCTGAAGAGGTTGGGTTATGTGGT TTTGAGGTCTTCAGCCACCTAAAGAGGTTGGGTTATGTGGT Direct Loss 0.95883849551593 0 NA NA prediction 0.91767699103186 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73515090 chr17:73515090 synonymous SNV . 0 21 hm7G_associated_SNPs_2321 0 0 1 0 3 TSEN54 chr17:73515084 3'AG 73515084 Downstream 7bp 2289 chr17 73515090 73515090 1 + G A BLCA 73515090 + 73515070 73515110 41 TTTGAGGTCTTCAGCCACCTGAAGAGGTTGGGTTATGTGGT TTTGAGGTCTTCAGCCACCTAAAGAGGTTGGGTTATGTGGT Direct Loss 0.95883849551593 0 NA NA prediction 0.91767699103186 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73515090 chr17:73515090 synonymous SNV . 0 21 hm7G_associated_SNPs_2321 0 0 1 0 3 TSEN54 chr17:73515128 5'GT 73515128 Upstream 39bp 2290 chr14 93686658 93686658 1 + G T UCEC 93686658 + 93686638 93686678 41 ACGACACAGTTCTGGCTTATGAAAACAAAGGGAAGATTGCC ACGACACAGTTCTGGCTTATTAAAACAAAGGGAAGATTGCC Direct Loss 0.958838180322661 0 NA NA prediction 0.917676360645323 Functional Loss - UBR7 ENSG00000012963 CDS Human protein_coding chr14:93686658 chr14:93686658 stopgain 0.998 1 21 hm7G_associated_SNPs_2322 0 0 1 0 2 UBR7 chr14:93686595 3'AG 93686595 Downstream 64bp 2291 chr14 93686658 93686658 1 + G T UCEC 93686658 + 93686638 93686678 41 ACGACACAGTTCTGGCTTATGAAAACAAAGGGAAGATTGCC ACGACACAGTTCTGGCTTATTAAAACAAAGGGAAGATTGCC Direct Loss 0.958838180322661 0 NA NA prediction 0.917676360645323 Functional Loss - UBR7 ENSG00000012963 CDS Human protein_coding chr14:93686658 chr14:93686658 stopgain 0.998 1 21 hm7G_associated_SNPs_2322 0 0 1 0 2 UBR7 chr14:93686757 5'GT 93686757 Upstream 100bp 2292 chr19 36128429 36128429 1 + G A UCEC 36128429 + 36128409 36128449 41 GTGGTCCGCAAGAAGCAGAAGGAAAAGAAGAAGCTGGGCCT GTGGTCCGCAAGAAGCAGAAAGAAAAGAAGAAGCTGGGCCT Direct Loss 0.958819987739751 0 NA NA prediction 0.917639975479501 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128429 chr19:36128429 synonymous SNV . 0 21 hm7G_associated_SNPs_2323 0 0 1 0 1 RBM42 chr19:36128344 3'AG 36128344 Downstream 86bp 2293 chr19 49422352 49422352 1 + G A LGG 49422352 + 49422332 49422372 41 GAGATGGAGGAGGAGCGACTGCGCATGCGGGAGCATGTGAT GAGATGGAGGAGGAGCGACTACGCATGCGGGAGCATGTGAT Direct Loss 0.958808692925474 0 NA NA prediction 0.917617385850949 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422352 chr19:49422352 synonymous SNV . 0 21 hm7G_associated_SNPs_2325 0 0 1 0 2 NUCB1 chr19:49422287 3'AG 49422287 Downstream 66bp 2294 chr19 49422352 49422352 1 + G A LGG 49422352 + 49422332 49422372 41 GAGATGGAGGAGGAGCGACTGCGCATGCGGGAGCATGTGAT GAGATGGAGGAGGAGCGACTACGCATGCGGGAGCATGTGAT Direct Loss 0.958808692925474 0 NA NA prediction 0.917617385850949 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422352 chr19:49422352 synonymous SNV . 0 21 hm7G_associated_SNPs_2325 0 0 1 0 2 NUCB1 chr19:49422379 5'GT 49422379 Upstream 28bp 2295 chr12 113866227 113866227 1 + G A LUSC 113866227 + 113866207 113866247 41 CATTCCTTCTCTTCCCAGATGGCCAAGAAGGGATGCAGACA CATTCCTTCTCTTCCCAGATAGCCAAGAAGGGATGCAGACA Direct Loss 0.958784351798337 0 NA NA prediction 0.917568703596674 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113866227 chr12:113866227 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_2326 0 0 0 0 2 SDSL chr12:113866225 3'AG 113866225 Downstream 3bp 2296 chr12 113866227 113866227 1 + G A LUSC 113866227 + 113866207 113866247 41 CATTCCTTCTCTTCCCAGATGGCCAAGAAGGGATGCAGACA CATTCCTTCTCTTCCCAGATAGCCAAGAAGGGATGCAGACA Direct Loss 0.958784351798337 0 NA NA prediction 0.917568703596674 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113866227 chr12:113866227 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_2326 0 0 0 0 2 SDSL chr12:113866264 5'GT 113866264 Upstream 38bp 2297 chr8 27657189 27657189 1 + G T LUSC 27657189 + 27657169 27657209 41 AGAATCTGGGTTTTCAGACTGAAGAGAAGAAAGCGCATTGC AGAATCTGGGTTTTCAGACTTAAGAGAAGAAAGCGCATTGC Direct Loss 0.958769168846552 0 NA NA prediction 0.917538337693104 Functional Loss - ESCO2 ENSG00000171320 CDS Human protein_coding chr8:27657189 chr8:27657189 synonymous SNV . 0 21 hm7G_associated_SNPs_2327 0 0 1 2 1 ESCO2 chr8:27657233 5'GT 27657233 Upstream 45bp 2298 chr10 18957556 18957556 1 + G A HNSC 18957556 + 18957536 18957576 41 TTCTTATGTGGGATATTGGTGGTCAGGAGTCTCTGCGATCA TTCTTATGTGGGATATTGGTAGTCAGGAGTCTCTGCGATCA Direct Loss 0.958762787879677 0 NA NA prediction 0.917525575759354 Functional Loss - ARL5B ENSG00000165997 CDS Human protein_coding chr10:18957556 chr10:18957556 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_2328 0 0 1 0 2 ARL5B chr10:18957459 3'AG 18957459 Downstream 98bp 2299 chr10 18957556 18957556 1 + G A HNSC 18957556 + 18957536 18957576 41 TTCTTATGTGGGATATTGGTGGTCAGGAGTCTCTGCGATCA TTCTTATGTGGGATATTGGTAGTCAGGAGTCTCTGCGATCA Direct Loss 0.958762787879677 0 NA NA prediction 0.917525575759354 Functional Loss - ARL5B ENSG00000165997 CDS Human protein_coding chr10:18957556 chr10:18957556 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_2328 0 0 1 0 2 ARL5B chr10:18957606 5'GT 18957606 Upstream 51bp 2300 chr20 29847314 29847314 1 + G C rs115431286 29847314 + 29847294 29847334 41 TGGCAGATGCAGGAAATCATGCAAAGAAATTGAGAGGAAGA TGGCAGATGCAGGAAATCATCCAAAGAAATTGAGAGGAAGA Direct Loss 0.958743359202183 0 NA NA prediction 0.917486718404367 Functional Loss - DEFB115 ENSG00000215547 CDS Human protein_coding chr20:29847314 chr20:29847314 nonsynonymous SNV 0.304 3 21 hm7G_associated_SNPs_2329 0 0 0 0 1 DEFB115 chr20:29847263 3'AG 29847263 Downstream 52bp 2301 chr15 38229091 38229091 1 + G A HNSC 38229091 + 38229071 38229111 41 CGCGGGGCCTGGTGGAAGATGAAGAGTGGGAGAAGGAGAAC CGCGGGGCCTGGTGGAAGATAAAGAGTGGGAGAAGGAGAAC Direct Loss 0.958727488578524 0 NA NA prediction 0.917454977157049 Functional Loss - TMCO5A ENSG00000166069 CDS Human protein_coding chr15:38229091 chr15:38229091 nonsynonymous SNV 0.694 3 21 hm7G_associated_SNPs_2331 0 0 0 0 2 TMCO5A chr15:38229048 3'AG 38229048 Downstream 44bp 2302 chr15 38229091 38229091 1 + G A HNSC 38229091 + 38229071 38229111 41 CGCGGGGCCTGGTGGAAGATGAAGAGTGGGAGAAGGAGAAC CGCGGGGCCTGGTGGAAGATAAAGAGTGGGAGAAGGAGAAC Direct Loss 0.958727488578524 0 NA NA prediction 0.917454977157049 Functional Loss - TMCO5A ENSG00000166069 CDS Human protein_coding chr15:38229091 chr15:38229091 nonsynonymous SNV 0.694 3 21 hm7G_associated_SNPs_2331 0 0 0 0 2 TMCO5A chr15:38229171 5'GT 38229171 Upstream 81bp 2303 chr17 15902870 15902870 1 - C G BLCA 15902870 - 15902850 15902890 41 GCGGTTGTGGAGGAGCTCCTGAGCGAGATGGCGGCGGCGGT GCGGTTGTGGAGGAGCTCCTCAGCGAGATGGCGGCGGCGGT Direct Loss 0.958723802716636 0 NA NA prediction 0.917447605433273 Functional Loss - ZSWIM7 ENSG00000011295;ENSG00000214941 CDS Human other chr17:15902870 chr17:15902870 stopgain . 0 21 hm7G_associated_SNPs_2333 0 0 1 0 2 TTC19 chr17:15902820 5'GT 15902820 Upstream 51bp 2304 chr17 15902870 15902870 1 - C G BLCA 15902870 - 15902850 15902890 41 GCGGTTGTGGAGGAGCTCCTGAGCGAGATGGCGGCGGCGGT GCGGTTGTGGAGGAGCTCCTCAGCGAGATGGCGGCGGCGGT Direct Loss 0.958723802716636 0 NA NA prediction 0.917447605433273 Functional Loss - ZSWIM7 ENSG00000011295;ENSG00000214941 CDS Human other chr17:15902870 chr17:15902870 stopgain . 0 21 hm7G_associated_SNPs_2333 0 0 1 0 2 ZSWIM7 chr17:15902833 5'GT 15902833 Upstream 38bp 2305 chr12 110348999 110348999 1 + G A LUSC 110348999 + 110348979 110349019 41 GCCATTGAGGAGCAGCTGCAGCTGGAGCGGGCGCGGGAGGC GCCATTGAGGAGCAGCTGCAACTGGAGCGGGCGCGGGAGGC Direct Loss 0.95871325572347 0 NA NA prediction 0.917426511446941 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110348999 chr12:110348999 synonymous SNV . 0 21 hm7G_associated_SNPs_2334 0 0 0 0 1 TCHP chr12:110349040 5'GT 110349040 Upstream 42bp 2306 chr3 9979755 9979755 1 + G A LUAD 9979755 + 9979735 9979775 41 CTCAGATTCCCTGAAGCTCTGCTGCCCCGCAGGCACCTTCG CTCAGATTCCCTGAAGCTCTACTGCCCCGCAGGCACCTTCG Direct Loss 0.958708669397583 0 NA NA prediction 0.917417338795165 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9979755 chr3:9979755 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2336 0 0 1 0 2 CRELD1 chr3:9979699 3'AG 9979699 Downstream 57bp 2307 chr3 9979755 9979755 1 + G A LUAD 9979755 + 9979735 9979775 41 CTCAGATTCCCTGAAGCTCTGCTGCCCCGCAGGCACCTTCG CTCAGATTCCCTGAAGCTCTACTGCCCCGCAGGCACCTTCG Direct Loss 0.958708669397583 0 NA NA prediction 0.917417338795165 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9979755 chr3:9979755 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2336 0 0 1 0 2 CRELD1 chr3:9979790 5'GT 9979790 Upstream 36bp 2308 chr17 38230744 38230744 1 + G A GBM 38230744 + 38230724 38230764 41 TGGATGGAATTGAAGTGAATGGAACAGAAGCCAAGCAAGGT TGGATGGAATTGAAGTGAATAGAACAGAAGCCAAGCAAGGT Direct Loss 0.958701952252805 0 NA NA prediction 0.91740390450561 Functional Loss - THRA ENSG00000126351 CDS Human protein_coding chr17:38230744 chr17:38230744 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2338 0 0 1 0 1 THRA chr17:38230794 5'GT 38230794 Upstream 51bp 2309 chr8 144459586 144459586 1 + G T HNSC 144459586 + 144459566 144459606 41 CCCATGATCCCCCTGGGCCTGAAGGAGACCAAGGAGCTGGA CCCATGATCCCCCTGGGCCTTAAGGAGACCAAGGAGCTGGA Direct Loss 0.958682351003825 0 NA NA prediction 0.917364702007649 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144459586 chr8:144459586 synonymous SNV . 0 21 hm7G_associated_SNPs_2341 0 0 1 0 2 RHPN1 chr8:144459550 3'AG 144459550 Downstream 37bp 2310 chr8 144459586 144459586 1 + G T HNSC 144459586 + 144459566 144459606 41 CCCATGATCCCCCTGGGCCTGAAGGAGACCAAGGAGCTGGA CCCATGATCCCCCTGGGCCTTAAGGAGACCAAGGAGCTGGA Direct Loss 0.958682351003825 0 NA NA prediction 0.917364702007649 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144459586 chr8:144459586 synonymous SNV . 0 21 hm7G_associated_SNPs_2341 0 0 1 0 2 RHPN1 chr8:144459625 5'GT 144459625 Upstream 40bp 2311 chr14 94505361 94505361 1 + G T SARC 94505361 + 94505341 94505381 41 GACCAAAGGGGATGGGAACTGCTTCTACAGGGCCTTGGGCT GACCAAAGGGGATGGGAACTTCTTCTACAGGGCCTTGGGCT Direct Loss 0.958671797710971 0 NA NA prediction 0.917343595421942 Functional Loss - OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94505361 chr14:94505361 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_2342 0 0 0 0 2 OTUB2 chr14:94505309 3'AG 94505309 Downstream 53bp 2312 chr14 94505361 94505361 1 + G T SARC 94505361 + 94505341 94505381 41 GACCAAAGGGGATGGGAACTGCTTCTACAGGGCCTTGGGCT GACCAAAGGGGATGGGAACTTCTTCTACAGGGCCTTGGGCT Direct Loss 0.958671797710971 0 NA NA prediction 0.917343595421942 Functional Loss - OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94505361 chr14:94505361 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_2342 0 0 0 0 2 OTUB2 chr14:94505427 5'GT 94505427 Upstream 67bp 2313 chr7 139229046 139229046 1 + G C BLCA 139229046 + 139229026 139229066 41 CTGGTGTCGACGGAGTGTCTGATGACCCGGCCCTGGGTGTG CTGGTGTCGACGGAGTGTCTCATGACCCGGCCCTGGGTGTG Direct Loss 0.958659427950968 0 NA NA prediction 0.917318855901936 Functional Loss - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139229046 chr7:139229046 synonymous SNV . 0 21 hm7G_associated_SNPs_2343 0 0 0 0 1 CLEC2L chr7:139228977 3'AG 139228977 Downstream 70bp 2314 chr1 151089885 151089885 1 + G C rs62621412 151089885 + 151089865 151089905 41 TAGTTCTAACTGTACCTGCTGGTAAGGTTGCAGAGGAGACT TAGTTCTAACTGTACCTGCTCGTAAGGTTGCAGAGGAGACT Direct Loss 0.958642437582029 0 NA NA prediction 0.917284875164059 Functional Loss - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151089885 chr1:151089885 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2345 0 0 0 0 1 GABPB2 chr1:151089868 3'AG 151089868 Downstream 18bp 2315 chr16 55362679 55362679 1 + G A LGG 55362679 + 55362659 55362699 41 GAAGACCTGGAGGAAGAGGAGGAGGAGGAGGAGGAAGCTGA GAAGACCTGGAGGAAGAGGAAGAGGAGGAGGAGGAAGCTGA Direct Loss 0.958617342546116 0 NA NA prediction 0.917234685092231 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55362679 chr16:55362679 synonymous SNV . 0 21 hm7G_associated_SNPs_2346 0 0 0 0 1 IRX6 chr16:55362612 3'AG 55362612 Downstream 68bp 2316 chr17 42084743 42084743 1 + G A SKCM 42084743 + 42084723 42084763 41 ATGCTACGGGTGCGCAGCCTGGACAAGCTGGACCAGGGCCG ATGCTACGGGTGCGCAGCCTAGACAAGCTGGACCAGGGCCG Direct Loss 0.95859840848955 0 NA NA prediction 0.917196816979101 Functional Loss - NAGS ENSG00000161653 CDS Human protein_coding chr17:42084743 chr17:42084743 synonymous SNV . 0 21 hm7G_associated_SNPs_2347 0 0 1 0 1 NAGS chr17:42084691 3'AG 42084691 Downstream 53bp 2317 chr3 15262445 15262445 1 + G A UCEC 15262445 + 15262425 15262465 41 TAAGTCCTCAGTCATGTGATGCACAAGGACAGAGATACACA TAAGTCCTCAGTCATGTGATACACAAGGACAGAGATACACA Direct Loss 0.958578769267752 0 NA NA prediction 0.917157538535504 Functional Loss - CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15262445 chr3:15262445 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_2348 0 0 1 0 1 CAPN7 chr3:15262488 5'GT 15262488 Upstream 44bp 2318 chr11 65726408 65726408 1 + G A rs568120263 65726408 + 65726388 65726428 41 GCGGAGCTGCAAGGCATCCAGCACAGGGTGCAGGCCCGGCC GCGGAGCTGCAAGGCATCCAACACAGGGTGCAGGCCCGGCC Direct Loss 0.958578594147808 0 NA NA prediction 0.917157188295616 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65726408 chr11:65726408 unknown . 0 21 hm7G_associated_SNPs_2349 0 0 0 0 2 TSGA10IP chr11:65726354 3'AG 65726354 Downstream 55bp 2319 chr11 65726408 65726408 1 + G A rs568120263 65726408 + 65726388 65726428 41 GCGGAGCTGCAAGGCATCCAGCACAGGGTGCAGGCCCGGCC GCGGAGCTGCAAGGCATCCAACACAGGGTGCAGGCCCGGCC Direct Loss 0.958578594147808 0 NA NA prediction 0.917157188295616 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65726408 chr11:65726408 unknown . 0 21 hm7G_associated_SNPs_2349 0 0 0 0 2 TSGA10IP chr11:65726453 5'GT 65726453 Upstream 46bp 2320 chr20 4680478 4680478 1 + G T UCEC 4680478 + 4680458 4680498 41 TTCACCGAGACCGACGTTAAGATGATGGAGCGCGTGGTTGA TTCACCGAGACCGACGTTAATATGATGGAGCGCGTGGTTGA Direct Loss 0.958549215933288 0 NA NA prediction 0.917098431866576 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680478 chr20:4680478 nonsynonymous SNV 0.990 5 21 hm7G_associated_SNPs_2351 0 0 1 0 1 PRNP chr20:4680516 5'GT 4680516 Upstream 39bp 2321 chr21 46386972 46386972 1 + G C HNSC 46386972 + 46386952 46386992 41 TCGAAGCCATAAAACTGGCTGAGCAGAAGCACAGGGAGGAG TCGAAGCCATAAAACTGGCTCAGCAGAAGCACAGGGAGGAG Direct Loss 0.958545461086733 0 NA NA prediction 0.917090922173466 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46386972 chr21:46386972 nonsynonymous SNV 0.979 2 21 hm7G_associated_SNPs_2352 0 0 0 0 1 FAM207A chr21:46386949 3'AG 46386949 Downstream 24bp 2322 chr12 57994205 57994205 1 + G T UCEC 57994205 + 57994185 57994225 41 AAAATATTTCTGGAGAAGCTGAAGAGAGATGTGGAGGTGAT AAAATATTTCTGGAGAAGCTTAAGAGAGATGTGGAGGTGAT Direct Loss 0.958538997172876 0 NA NA prediction 0.917077994345752 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57994205 chr12:57994205 synonymous SNV . 0 21 hm7G_associated_SNPs_2353 0 0 1 0 2 PIP4K2C chr12:57994107 3'AG 57994107 Downstream 99bp 2323 chr12 57994205 57994205 1 + G T UCEC 57994205 + 57994185 57994225 41 AAAATATTTCTGGAGAAGCTGAAGAGAGATGTGGAGGTGAT AAAATATTTCTGGAGAAGCTTAAGAGAGATGTGGAGGTGAT Direct Loss 0.958538997172876 0 NA NA prediction 0.917077994345752 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57994205 chr12:57994205 synonymous SNV . 0 21 hm7G_associated_SNPs_2353 0 0 1 0 2 PIP4K2C chr12:57994220 5'GT 57994220 Upstream 16bp 2324 chr7 56049217 56049217 1 + G T LIHC 56049217 + 56049197 56049237 41 AAACACTACCCTTGTACTTTGGTGGGGACTTGGAACACGTG AAACACTACCCTTGTACTTTTGTGGGGACTTGGAACACGTG Direct Loss 0.958507016083897 0 NA NA prediction 0.917014032167794 Functional Loss - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56049217 chr7:56049217 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2357 0 0 1 0 2 NIPSNAP2 chr7:56049166 3'AG 56049166 Downstream 52bp 2325 chr7 56049217 56049217 1 + G T LIHC 56049217 + 56049197 56049237 41 AAACACTACCCTTGTACTTTGGTGGGGACTTGGAACACGTG AAACACTACCCTTGTACTTTTGTGGGGACTTGGAACACGTG Direct Loss 0.958507016083897 0 NA NA prediction 0.917014032167794 Functional Loss - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56049217 chr7:56049217 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2357 0 0 1 0 2 NIPSNAP2 chr7:56049260 5'GT 56049260 Upstream 44bp 2326 chr12 123888168 123888168 1 + G A CESC 123888168 + 123888148 123888188 41 TGATTGAAAGTGGGAAGGAAGAAGGAATGAAGGTAAGGGGC TGATTGAAAGTGGGAAGGAAAAAGGAATGAAGGTAAGGGGC Direct Loss 0.958506970334742 0 NA NA prediction 0.917013940669484 Functional Loss - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123888168 chr12:123888168 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2358 0 0 1 0 2 KMT5A chr12:123888120 3'AG 123888120 Downstream 49bp 2327 chr12 123888168 123888168 1 + G A CESC 123888168 + 123888148 123888188 41 TGATTGAAAGTGGGAAGGAAGAAGGAATGAAGGTAAGGGGC TGATTGAAAGTGGGAAGGAAAAAGGAATGAAGGTAAGGGGC Direct Loss 0.958506970334742 0 NA NA prediction 0.917013940669484 Functional Loss - KMT5A ENSG00000183955 CDS Human protein_coding chr12:123888168 chr12:123888168 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2358 0 0 1 0 2 KMT5A chr12:123888179 5'GT 123888179 Upstream 12bp 2328 chr5 52781806 52781806 1 + G T UCEC 52781806 + 52781786 52781826 41 TCGGAAGACACCGAGGAAGAGGAGGAAGATGAAGACCAGGA TCGGAAGACACCGAGGAAGATGAGGAAGATGAAGACCAGGA Direct Loss 0.958473410301977 0 NA NA prediction 0.916946820603953 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52781806 chr5:52781806 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2361 0 0 1 0 1 FST chr5:52781781 3'AG 52781781 Downstream 26bp 2329 chr1 228033709 228033709 1 + G A SKCM 228033709 + 228033689 228033729 41 ACCGCAGCTGGTTGCAGATTGGAATTGTGAGCTGGGGCCGA ACCGCAGCTGGTTGCAGATTAGAATTGTGAGCTGGGGCCGA Direct Loss 0.958458601173286 0 NA NA prediction 0.916917202346573 Functional Loss - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228033709 chr1:228033709 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2363 0 0 0 0 1 PRSS38 chr1:228033655 3'AG 228033655 Downstream 55bp 2330 chr8 144799903 144799903 1 + G A rs45495391 144799903 + 144799883 144799923 41 AGGCAGTGGACCGGAGGACTGGTGAGGTCGTGGCCATCAAG AGGCAGTGGACCGGAGGACTAGTGAGGTCGTGGCCATCAAG Direct Loss 0.958445345825062 0 NA NA prediction 0.916890691650124 Functional Loss - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144799903 chr8:144799903 nonsynonymous SNV 0.966 3 21 hm7G_associated_SNPs_2364 0 0 1 0 2 MAPK15 chr8:144799864 3'AG 144799864 Downstream 40bp 2331 chr8 144799903 144799903 1 + G A rs45495391 144799903 + 144799883 144799923 41 AGGCAGTGGACCGGAGGACTGGTGAGGTCGTGGCCATCAAG AGGCAGTGGACCGGAGGACTAGTGAGGTCGTGGCCATCAAG Direct Loss 0.958445345825062 0 NA NA prediction 0.916890691650124 Functional Loss - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144799903 chr8:144799903 nonsynonymous SNV 0.966 3 21 hm7G_associated_SNPs_2364 0 0 1 0 2 MAPK15 chr8:144799962 5'GT 144799962 Upstream 60bp 2332 chr1 160168515 160168515 1 + G A SKCM 160168515 + 160168495 160168535 41 TGGCCTTCGCAGAGGAAGCTGATCCTGGTGAGGGAGGAATA TGGCCTTCGCAGAGGAAGCTAATCCTGGTGAGGGAGGAATA Direct Loss 0.958413952449443 0 NA NA prediction 0.916827904898885 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160168515 chr1:160168515 nonsynonymous SNV 0.899 4 21 hm7G_associated_SNPs_2365 0 0 0 0 2 CASQ1 chr1:160168467 3'AG 160168467 Downstream 49bp 2333 chr1 160168515 160168515 1 + G A SKCM 160168515 + 160168495 160168535 41 TGGCCTTCGCAGAGGAAGCTGATCCTGGTGAGGGAGGAATA TGGCCTTCGCAGAGGAAGCTAATCCTGGTGAGGGAGGAATA Direct Loss 0.958413952449443 0 NA NA prediction 0.916827904898885 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160168515 chr1:160168515 nonsynonymous SNV 0.899 4 21 hm7G_associated_SNPs_2365 0 0 0 0 2 CASQ1 chr1:160168521 5'GT 160168521 Upstream 7bp 2334 chr1 78408152 78408152 1 + G T GBM 78408152 + 78408132 78408172 41 TTATTTTAATACAGAAAAGAGAAGAGGAGGAGGAGGAAGAA TTATTTTAATACAGAAAAGATAAGAGGAGGAGGAGGAAGAA Direct Loss 0.958412581121224 0 NA NA prediction 0.916825162242448 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78408152 chr1:78408152 stopgain 0.999 0 21 hm7G_associated_SNPs_2366 0 0 0 0 1 NEXN chr1:78408146 3'AG 78408146 Downstream 7bp 2335 chrX 1761731 1761731 1 + G A SKCM 1761731 + 1761711 1761751 41 TAATTGAAAGCCTCCTGGATGAAGACAGGCGAGGTCCTCTG TAATTGAAAGCCTCCTGGATAAAGACAGGCGAGGTCCTCTG Direct Loss 0.958409377635306 0 NA NA prediction 0.916818755270613 Functional Loss - ASMT ENSG00000196433 CDS Human protein_coding chrX:1761731 chrX:1761731 nonsynonymous SNV 0.145 0 21 hm7G_associated_SNPs_2367 0 0 0 0 1 ASMT chrX:1761696 3'AG 1761696 Downstream 36bp 2336 chr11 65780335 65780335 1 + G A SKCM 65780335 + 65780315 65780355 41 TACTTCCTGACGATGGAGATGGGGAGCACAGACTGCCGCAA TACTTCCTGACGATGGAGATAGGGAGCACAGACTGCCGCAA Direct Loss 0.958391813832655 0 NA NA prediction 0.916783627665309 Functional Loss - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780335 chr11:65780335 nonsynonymous SNV 0.062 0 21 hm7G_associated_SNPs_2370 0 0 0 0 2 CST6 chr11:65780297 3'AG 65780297 Downstream 39bp 2337 chr11 65780335 65780335 1 + G A SKCM 65780335 + 65780315 65780355 41 TACTTCCTGACGATGGAGATGGGGAGCACAGACTGCCGCAA TACTTCCTGACGATGGAGATAGGGAGCACAGACTGCCGCAA Direct Loss 0.958391813832655 0 NA NA prediction 0.916783627665309 Functional Loss - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780335 chr11:65780335 nonsynonymous SNV 0.062 0 21 hm7G_associated_SNPs_2370 0 0 0 0 2 CST6 chr11:65780422 5'GT 65780422 Upstream 88bp 2338 chrX 118604894 118604894 1 + G A UCEC 118604894 + 118604874 118604914 41 GTACACAGGCACGCTTGACTGCTGGCGGAAGATTGCTCGTG GTACACAGGCACGCTTGACTACTGGCGGAAGATTGCTCGTG Direct Loss 0.958390645519186 0 NA NA prediction 0.916781291038372 Functional Loss - SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118604894 chrX:118604894 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2371 0 0 1 0 1 SLC25A5 chrX:118604864 3'AG 118604864 Downstream 31bp 2339 chr1 32502597 32502597 1 + G T LUSC 32502597 + 32502577 32502617 41 CCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGC CCCTCTCGTGGACGTGGGGTTCCAGTGAGAGGCCGGGGAGC Direct Loss 0.958385735832836 0 NA NA prediction 0.916771471665672 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502597 chr1:32502597 synonymous SNV . 0 21 hm7G_associated_SNPs_2372 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 87bp 2340 chr1 32502597 32502597 1 + G T LUSC 32502597 + 32502577 32502617 41 CCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGGAGC CCCTCTCGTGGACGTGGGGTTCCAGTGAGAGGCCGGGGAGC Direct Loss 0.958385735832836 0 NA NA prediction 0.916771471665672 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502597 chr1:32502597 synonymous SNV . 0 21 hm7G_associated_SNPs_2372 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 48bp 2341 chr13 61084796 61084796 1 + G C LUSC 61084796 + 61084776 61084816 41 GCAGGGGGCGAATAAGATCTGAAGATGAAGAGGACCTGGGA GCAGGGGGCGAATAAGATCTCAAGATGAAGAGGACCTGGGA Direct Loss 0.958380781363988 0 NA NA prediction 0.916761562727976 Functional Loss - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61084796 chr13:61084796 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_2373 0 0 1 0 2 TDRD3 chr13:61084764 3'AG 61084764 Downstream 33bp 2342 chr13 61084796 61084796 1 + G C LUSC 61084796 + 61084776 61084816 41 GCAGGGGGCGAATAAGATCTGAAGATGAAGAGGACCTGGGA GCAGGGGGCGAATAAGATCTCAAGATGAAGAGGACCTGGGA Direct Loss 0.958380781363988 0 NA NA prediction 0.916761562727976 Functional Loss - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61084796 chr13:61084796 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_2373 0 0 1 0 2 TDRD3 chr13:61084889 5'GT 61084889 Upstream 94bp 2343 chr6 160227065 160227065 1 + G T UCEC 160227065 + 160227045 160227085 41 GATTGACGAAGTGACGCGGTGGCTGGAGCTGGCCAAGGAAG GATTGACGAAGTGACGCGGTTGCTGGAGCTGGCCAAGGAAG Direct Loss 0.958372829443596 0 NA NA prediction 0.916745658887191 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160227065 chr6:160227065 nonsynonymous SNV 0.833 4 21 hm7G_associated_SNPs_2374 0 0 0 0 2 PNLDC1 chr6:160227015 3'AG 160227015 Downstream 51bp 2344 chr6 160227065 160227065 1 + G T UCEC 160227065 + 160227045 160227085 41 GATTGACGAAGTGACGCGGTGGCTGGAGCTGGCCAAGGAAG GATTGACGAAGTGACGCGGTTGCTGGAGCTGGCCAAGGAAG Direct Loss 0.958372829443596 0 NA NA prediction 0.916745658887191 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160227065 chr6:160227065 nonsynonymous SNV 0.833 4 21 hm7G_associated_SNPs_2374 0 0 0 0 2 PNLDC1 chr6:160227115 5'GT 160227115 Upstream 51bp 2345 chr22 29695615 29695615 1 + G T LUAD 29695615 + 29695595 29695635 41 ATCGTGGCAGAGGTGGCCCTGGTGGCATGCGGGGAGGAAGA ATCGTGGCAGAGGTGGCCCTTGTGGCATGCGGGGAGGAAGA Direct Loss 0.958369807989767 0 NA NA prediction 0.916739615979533 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695615 chr22:29695615 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2375 0 0 1 0 1 EWSR1 chr22:29695589 3'AG 29695589 Downstream 27bp 2346 chr20 31427653 31427653 1 + G T THCA 31427653 + 31427633 31427673 41 GACGACGAGGCAGCTGAGTTGATGCAGCAGGTGGGCACCCC GACGACGAGGCAGCTGAGTTTATGCAGCAGGTGGGCACCCC Direct Loss 0.958367728050726 0 NA NA prediction 0.916735456101453 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31427653 chr20:31427653 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2376 0 0 1 0 1 MAPRE1 chr20:31427662 5'GT 31427662 Upstream 10bp 2347 chr11 34160786 34160786 1 + G A BLCA 34160786 + 34160766 34160806 41 TCATGCTGAAGACGCTCACTGATGAGGATGAGGCTGACCAG TCATGCTGAAGACGCTCACTAATGAGGATGAGGCTGACCAG Direct Loss 0.958329244711391 0 NA NA prediction 0.916658489422782 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34160786 chr11:34160786 nonsynonymous SNV 0.008 0 21 hm7G_associated_SNPs_2380 0 0 0 0 2 NAT10 chr11:34160738 3'AG 34160738 Downstream 49bp 2348 chr11 34160786 34160786 1 + G A BLCA 34160786 + 34160766 34160806 41 TCATGCTGAAGACGCTCACTGATGAGGATGAGGCTGACCAG TCATGCTGAAGACGCTCACTAATGAGGATGAGGCTGACCAG Direct Loss 0.958329244711391 0 NA NA prediction 0.916658489422782 Functional Loss - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34160786 chr11:34160786 nonsynonymous SNV 0.008 0 21 hm7G_associated_SNPs_2380 0 0 0 0 2 NAT10 chr11:34160834 5'GT 34160834 Upstream 49bp 2349 chr9 131747195 131747195 1 + G A UCEC 131747195 + 131747175 131747215 41 CCAGTGCGGAAGGGATGAATGCTGGAGGGTACGGAAACCTC CCAGTGCGGAAGGGATGAATACTGGAGGGTACGGAAACCTC Direct Loss 0.958315692014255 0 NA NA prediction 0.91663138402851 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131747195 chr9:131747195 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_2382 0 0 1 0 1 NUP188 chr9:131747293 5'GT 131747293 Upstream 99bp 2350 chr16 90110950 90110950 1 - C T rs1048149 90110950 - 90110930 90110970 41 CTTCGACACTGAGGGCTACTGGAGGAAGAGGGGGCAGGAAA CTTCGACACTGAGGGCTACTAGAGGAAGAGGGGGCAGGAAA Direct Loss 0.958288263988429 0 NA NA prediction 0.916576527976859 Functional Loss - URAHP ENSG00000222019 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:90110950 chr16:90110950 . . 0 21 hm7G_associated_SNPs_2383 0 1 0 0 2 URAHP chr16:90110910 5'GT 90110910 Upstream 41bp 2351 chr16 90110950 90110950 1 - C T rs1048149 90110950 - 90110930 90110970 41 CTTCGACACTGAGGGCTACTGGAGGAAGAGGGGGCAGGAAA CTTCGACACTGAGGGCTACTAGAGGAAGAGGGGGCAGGAAA Direct Loss 0.958288263988429 0 NA NA prediction 0.916576527976859 Functional Loss - URAHP ENSG00000222019 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:90110950 chr16:90110950 . . 0 21 hm7G_associated_SNPs_2383 0 1 0 0 2 URAHP chr16:90111031 3'AG 90111031 Downstream 82bp 2352 chr9 99220728 99220728 1 + G A OV 99220728 + 99220708 99220748 41 AGCCGTGGGCCGGAGGGGATGCTCGAAAGAGCTGAGCGGAG AGCCGTGGGCCGGAGGGGATACTCGAAAGAGCTGAGCGGAG Direct Loss 0.958258295603589 0 NA NA prediction 0.916516591207177 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99220728 chr9:99220728 nonsynonymous SNV 0.009 0 21 hm7G_associated_SNPs_2387 0 0 1 0 2 HABP4 chr9:99220661 3'AG 99220661 Downstream 68bp 2353 chr9 99220728 99220728 1 + G A OV 99220728 + 99220708 99220748 41 AGCCGTGGGCCGGAGGGGATGCTCGAAAGAGCTGAGCGGAG AGCCGTGGGCCGGAGGGGATACTCGAAAGAGCTGAGCGGAG Direct Loss 0.958258295603589 0 NA NA prediction 0.916516591207177 Functional Loss - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99220728 chr9:99220728 nonsynonymous SNV 0.009 0 21 hm7G_associated_SNPs_2387 0 0 1 0 2 HABP4 chr9:99220823 5'GT 99220823 Upstream 96bp 2354 chr2 54014422 54014422 1 + G A SKCM 54014422 + 54014402 54014442 41 CTGGTCCTCTGCGGCCTCCTGGAGGCGTCCGGCGGCGGCCG CTGGTCCTCTGCGGCCTCCTAGAGGCGTCCGGCGGCGGCCG Direct Loss 0.958255954131552 0 NA NA prediction 0.916511908263104 Functional Loss - ERLEC1 ENSG00000068912 CDS Human protein_coding chr2:54014422 chr2:54014422 synonymous SNV . 0 21 hm7G_associated_SNPs_2388 0 0 1 0 1 ERLEC1 chr2:54014509 5'GT 54014509 Upstream 88bp 2355 chr2 170382147 170382147 1 + G T BRCA 170382147 + 170382127 170382167 41 TGTTGAAGGAAATACGTTATGCTTCAGGAGCTAGTTGCCTA TGTTGAAGGAAATACGTTATTCTTCAGGAGCTAGTTGCCTA Direct Loss 0.958251809929074 0 NA NA prediction 0.916503619858148 Functional Loss - KLHL41 ENSG00000163093;ENSG00000239474;ENSG00000251569 CDS Human other chr2:170382147 chr2:170382147 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2389 0 0 0 0 1 KLHL41 chr2:170382095 3'AG 170382095 Downstream 53bp 2356 chr6 34208621 34208621 1 + G C BLCA 34208621 + 34208601 34208641 41 AGCAGGAAAAGGACGGCACTGAGAAGCGGGGCCGGGGCAGG AGCAGGAAAAGGACGGCACTCAGAAGCGGGGCCGGGGCAGG Direct Loss 0.958251216891325 0 NA NA prediction 0.916502433782649 Functional Loss - HMGA1 ENSG00000137309 CDS Human protein_coding chr6:34208621 chr6:34208621 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_2390 0 0 1 0 2 HMGA1 chr6:34208659 5'GT 34208659 Upstream 39bp 2357 chr6 34208621 34208621 1 + G C BLCA 34208621 + 34208601 34208641 41 AGCAGGAAAAGGACGGCACTGAGAAGCGGGGCCGGGGCAGG AGCAGGAAAAGGACGGCACTCAGAAGCGGGGCCGGGGCAGG Direct Loss 0.958251216891325 0 NA NA prediction 0.916502433782649 Functional Loss - HMGA1 ENSG00000137309 CDS Human protein_coding chr6:34208621 chr6:34208621 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_2390 0 0 1 0 2 HMGA1 chr6:34208692 5'GT 34208692 Upstream 72bp 2358 chr20 9496689 9496689 1 + G A BLCA 9496689 + 9496669 9496709 41 TCGCATTGACCCGGGGAGCTGAGGTGAAGGGCCGCTGTGGC TCGCATTGACCCGGGGAGCTAAGGTGAAGGGCCGCTGTGGC Direct Loss 0.958228398398218 0 NA NA prediction 0.916456796796436 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496689 chr20:9496689 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2392 0 0 0 0 2 LAMP5 chr20:9496647 3'AG 9496647 Downstream 43bp 2359 chr20 9496689 9496689 1 + G A BLCA 9496689 + 9496669 9496709 41 TCGCATTGACCCGGGGAGCTGAGGTGAAGGGCCGCTGTGGC TCGCATTGACCCGGGGAGCTAAGGTGAAGGGCCGCTGTGGC Direct Loss 0.958228398398218 0 NA NA prediction 0.916456796796436 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496689 chr20:9496689 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2392 0 0 0 0 2 LAMP5 chr20:9496778 5'GT 9496778 Upstream 90bp 2360 chr2 122485422 122485422 1 - C T CESC 122485422 - 122485402 122485442 41 CTCAAGTGGCTGAACTGAATGATGATGATAAAGATGATGAA CTCAAGTGGCTGAACTGAATAATGATGATAAAGATGATGAA Direct Loss 0.958223468840762 0 NA NA prediction 0.916446937681525 Functional Loss - NIFK ENSG00000155438 CDS Human protein_coding chr2:122485422 chr2:122485422 nonsynonymous SNV 0.165 1 21 hm7G_associated_SNPs_2393 0 0 1 0 1 NIFK chr2:122485488 3'AG 122485488 Downstream 67bp 2361 chr14 24773757 24773757 1 + G A BLCA 24773757 + 24773737 24773777 41 CCGTGTGCTAGATGCCATCTGGAGTGGAGCAGCCTTGAGGG CCGTGTGCTAGATGCCATCTAGAGTGGAGCAGCCTTGAGGG Direct Loss 0.958220552034778 0 NA NA prediction 0.916441104069556 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24773757 chr14:24773757 stopgain 0.998 1 21 hm7G_associated_SNPs_2394 0 0 1 0 2 NOP9 chr14:24773699 3'AG 24773699 Downstream 59bp 2362 chr14 24773757 24773757 1 + G A BLCA 24773757 + 24773737 24773777 41 CCGTGTGCTAGATGCCATCTGGAGTGGAGCAGCCTTGAGGG CCGTGTGCTAGATGCCATCTAGAGTGGAGCAGCCTTGAGGG Direct Loss 0.958220552034778 0 NA NA prediction 0.916441104069556 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24773757 chr14:24773757 stopgain 0.998 1 21 hm7G_associated_SNPs_2394 0 0 1 0 2 NOP9 chr14:24773804 5'GT 24773804 Upstream 48bp 2363 chr10 70696752 70696752 1 + G A LUSC 70696752 + 70696732 70696772 41 CGACCATCAGCTCAGAGACTGATAGAAGAGAAAGGTGCAGT CGACCATCAGCTCAGAGACTAATAGAAGAGAAAGGTGCAGT Direct Loss 0.958206003517492 0 NA NA prediction 0.916412007034983 Functional Loss - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70696752 chr10:70696752 synonymous SNV . 0 21 hm7G_associated_SNPs_2397 0 0 1 0 2 DDX50 chr10:70696692 3'AG 70696692 Downstream 61bp 2364 chr10 70696752 70696752 1 + G A LUSC 70696752 + 70696732 70696772 41 CGACCATCAGCTCAGAGACTGATAGAAGAGAAAGGTGCAGT CGACCATCAGCTCAGAGACTAATAGAAGAGAAAGGTGCAGT Direct Loss 0.958206003517492 0 NA NA prediction 0.916412007034983 Functional Loss - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70696752 chr10:70696752 synonymous SNV . 0 21 hm7G_associated_SNPs_2397 0 0 1 0 2 DDX50 chr10:70696851 5'GT 70696851 Upstream 100bp 2365 chr12 96653599 96653599 1 + G A HNSC 96653599 + 96653579 96653619 41 CAGTTGCTCCGCTGAGTCCTGCCAGGCTGCAAGGGCCAAGC CAGTTGCTCCGCTGAGTCCTACCAGGCTGCAAGGGCCAAGC Direct Loss 0.958143654956857 0 NA NA prediction 0.916287309913715 Functional Loss - ELK3 ENSG00000111145 CDS Human protein_coding chr12:96653599 chr12:96653599 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2401 0 0 0 0 2 ELK3 chr12:96653509 3'AG 96653509 Downstream 91bp 2366 chr12 96653599 96653599 1 + G A HNSC 96653599 + 96653579 96653619 41 CAGTTGCTCCGCTGAGTCCTGCCAGGCTGCAAGGGCCAAGC CAGTTGCTCCGCTGAGTCCTACCAGGCTGCAAGGGCCAAGC Direct Loss 0.958143654956857 0 NA NA prediction 0.916287309913715 Functional Loss - ELK3 ENSG00000111145 CDS Human protein_coding chr12:96653599 chr12:96653599 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2401 0 0 0 0 2 ELK3 chr12:96653631 5'GT 96653631 Upstream 33bp 2367 chr15 78633401 78633401 1 + G A SKCM 78633401 + 78633381 78633421 41 GCAGGTGTGAACGCCATGCTGAGGAAAGTGGCCGTAGCGGC GCAGGTGTGAACGCCATGCTAAGGAAAGTGGCCGTAGCGGC Direct Loss 0.958126791469659 0 NA NA prediction 0.916253582939319 Functional Loss - CRABP1 ENSG00000166426 CDS Human protein_coding chr15:78633401 chr15:78633401 synonymous SNV . 0 21 hm7G_associated_SNPs_2404 0 0 0 0 1 CRABP1 chr15:78633385 3'AG 78633385 Downstream 17bp 2368 chr3 8787229 8787229 1 + G A BRCA 8787229 + 8787209 8787249 41 CAGGTGGATTTTGAAGACGTGATCGCAGAGCCTGTGGGCAC CAGGTGGATTTTGAAGACGTAATCGCAGAGCCTGTGGGCAC Direct Loss 0.958115667522014 0 NA NA prediction 0.916231335044028 Functional Loss - CAV3 ENSG00000182533 CDS Human protein_coding chr3:8787229 chr3:8787229 synonymous SNV . 0 21 hm7G_associated_SNPs_2405 0 0 0 0 1 CAV3 chr3:8787212 3'AG 8787212 Downstream 18bp 2369 chr3 40502923 40502923 1 + G A COAD 40502923 + 40502903 40502943 41 ACCAGAAGTATGTCCGACAAGCCTGGCAGAAGGCAGACATC ACCAGAAGTATGTCCGACAAACCTGGCAGAAGGCAGACATC Direct Loss 0.95809383083846 0 NA NA prediction 0.91618766167692 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;TAP treatment RPL14 ENSG00000188846 CDS Human protein_coding chr3:40502923 chr3:40502923 nonsynonymous SNV 0.982 3 21 hm7G_associated_SNPs_2406 0 0 19 0 1 RPL14 chr3:40502898 3'AG 40502898 Downstream 26bp 2370 chrX 69502178 69502178 1 + G T HNSC 69502178 + 69502158 69502198 41 AAATCTAAACTCTTATTCCTGGGAGAGCAGAGCGGTGTGGG AAATCTAAACTCTTATTCCTTGGAGAGCAGAGCGGTGTGGG Direct Loss 0.958082016308332 0 NA NA prediction 0.916164032616663 Functional Loss - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69502178 chrX:69502178 synonymous SNV . 0 21 hm7G_associated_SNPs_2407 0 0 0 0 1 RAB41 chrX:69502191 5'GT 69502191 Upstream 14bp 2371 chr7 24329163 24329163 1 + G A LGG 24329163 + 24329143 24329183 41 ACACTGATTTCAGACCTCTTGATGAGAGAAAGCACAGAAAA ACACTGATTTCAGACCTCTTAATGAGAGAAAGCACAGAAAA Direct Loss 0.958080084976072 0 NA NA prediction 0.916160169952143 Functional Loss - NPY ENSG00000122585 CDS Human protein_coding chr7:24329163 chr7:24329163 synonymous SNV . 0 21 hm7G_associated_SNPs_2408 0 0 0 0 2 NPY chr7:24329118 3'AG 24329118 Downstream 46bp 2372 chr7 24329163 24329163 1 + G A LGG 24329163 + 24329143 24329183 41 ACACTGATTTCAGACCTCTTGATGAGAGAAAGCACAGAAAA ACACTGATTTCAGACCTCTTAATGAGAGAAAGCACAGAAAA Direct Loss 0.958080084976072 0 NA NA prediction 0.916160169952143 Functional Loss - NPY ENSG00000122585 CDS Human protein_coding chr7:24329163 chr7:24329163 synonymous SNV . 0 21 hm7G_associated_SNPs_2408 0 0 0 0 2 NPY chr7:24329198 5'GT 24329198 Upstream 36bp 2373 chr10 74034535 74034535 1 + G A PRAD 74034535 + 74034515 74034555 41 GAACACTTGTGTGCCAACCTGATGCAGCTGCTGCAGGAGAG GAACACTTGTGTGCCAACCTAATGCAGCTGCTGCAGGAGAG Direct Loss 0.958064947350652 0 NA NA prediction 0.916129894701304 Functional Loss - DDIT4 ENSG00000168209 CDS Human protein_coding chr10:74034535 chr10:74034535 synonymous SNV . 0 21 hm7G_associated_SNPs_2410 0 0 1 0 1 DDIT4 chr10:74034453 3'AG 74034453 Downstream 83bp 2374 chr6 27806760 27806760 1 + G A GBM 27806760 + 27806740 27806780 41 CTGCTGCTGCCAGGGGAGCTGGCCAAGCACGCGGTGTCGGA CTGCTGCTGCCAGGGGAGCTAGCCAAGCACGCGGTGTCGGA Direct Loss 0.958008079646349 0 NA NA prediction 0.916016159292697 Functional Loss - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806760 chr6:27806760 synonymous SNV . 0 21 hm7G_associated_SNPs_2411 0 0 1 0 2 HIST1H2BN chr6:27806816 5'GT 27806816 Upstream 57bp 2375 chr6 27806760 27806760 1 + G A GBM 27806760 + 27806740 27806780 41 CTGCTGCTGCCAGGGGAGCTGGCCAAGCACGCGGTGTCGGA CTGCTGCTGCCAGGGGAGCTAGCCAAGCACGCGGTGTCGGA Direct Loss 0.958008079646349 0 NA NA prediction 0.916016159292697 Functional Loss - HIST1H2BN ENSG00000233822 CDS Human protein_coding chr6:27806760 chr6:27806760 synonymous SNV . 0 21 hm7G_associated_SNPs_2411 0 0 1 0 2 HIST1H2BN chr6:27806843 5'GT 27806843 Upstream 84bp 2376 chr20 1223278 1223278 1 + G A SARC 1223278 + 1223258 1223298 41 TTTAGACATTGCTGAGAAAAGGAAAGGCAAAAAGAGGAGAT TTTAGACATTGCTGAGAAAAAGAAAGGCAAAAAGAGGAGAT Direct Loss 0.958000812213723 0 NA NA prediction 0.916001624427446 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1223278 chr20:1223278 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_2412 0 0 0 0 1 RAD21L1 chr20:1223263 3'AG 1223263 Downstream 16bp 2377 chr11 117075006 117075006 1 + G A HNSC 117075006 + 117074986 117075026 41 CATGTCATTGGCCTTCAGATGGGCAGCAACAGAGGGGCCTC CATGTCATTGGCCTTCAGATAGGCAGCAACAGAGGGGCCTC Direct Loss 0.957984824562659 0 NA NA prediction 0.915969649125317 Functional Loss - TAGLN ENSG00000149591 CDS Human protein_coding chr11:117075006 chr11:117075006 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2413 0 0 1 0 1 TAGLN chr11:117074931 3'AG 117074931 Downstream 76bp 2378 chr7 142637512 142637512 1 + G A HNSC 142637512 + 142637492 142637532 41 ATGTGGCAGGTGGTGGACATGGCCCAGCAGGAAGAAGACCA ATGTGGCAGGTGGTGGACATAGCCCAGCAGGAAGAAGACCA Direct Loss 0.957953454953618 0 NA NA prediction 0.915906909907237 Functional Loss - C7orf34 ENSG00000165131 CDS Human protein_coding chr7:142637512 chr7:142637512 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_2414 0 0 0 0 1 C7orf34 chr7:142637439 3'AG 142637439 Downstream 74bp 2379 chr2 131103191 131103191 1 + G A LUSC 131103191 + 131103171 131103211 41 GAATGAACCGAGGTCGACATGAAGTGGGGGCACTGGTGCGA GAATGAACCGAGGTCGACATAAAGTGGGGGCACTGGTGCGA Direct Loss 0.9579404939676 0 NA NA prediction 0.915880987935201 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103191 chr2:131103191 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_2415 0 0 1 0 2 IMP4 chr2:131103140 3'AG 131103140 Downstream 52bp 2380 chr2 131103191 131103191 1 + G A LUSC 131103191 + 131103171 131103211 41 GAATGAACCGAGGTCGACATGAAGTGGGGGCACTGGTGCGA GAATGAACCGAGGTCGACATAAAGTGGGGGCACTGGTGCGA Direct Loss 0.9579404939676 0 NA NA prediction 0.915880987935201 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103191 chr2:131103191 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_2415 0 0 1 0 2 IMP4 chr2:131103272 5'GT 131103272 Upstream 82bp 2381 chr22 38352802 38352802 1 + G A HNSC 38352802 + 38352782 38352822 41 TTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGG TTGATGGCGACGACTTTGATAATGTGGAGGAGGATGAAGGG Direct Loss 0.957939698835432 0 NA NA prediction 0.915879397670863 Functional Loss - POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352802 chr22:38352802 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2416 0 0 1 0 2 POLR2F chr22:38352780 3'AG 38352780 Downstream 23bp 2382 chr22 38352802 38352802 1 + G A HNSC 38352802 + 38352782 38352822 41 TTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGG TTGATGGCGACGACTTTGATAATGTGGAGGAGGATGAAGGG Direct Loss 0.957939698835432 0 NA NA prediction 0.915879397670863 Functional Loss - POLR2F ENSG00000100142 CDS Human protein_coding chr22:38352802 chr22:38352802 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2416 0 0 1 0 2 POLR2F chr22:38352849 5'GT 38352849 Upstream 48bp 2383 chr16 56704816 56704816 1 + G A LUSC 56704816 + 56704796 56704836 41 CCCTTTTTCCCCAGGCTGCTGCTCCTGTTGCCCCCTGGGCT CCCTTTTTCCCCAGGCTGCTACTCCTGTTGCCCCCTGGGCT Direct Loss 0.957933859694658 0 NA NA prediction 0.915867719389316 Functional Loss - MT1H ENSG00000205358 CDS Human protein_coding chr16:56704816 chr16:56704816 nonsynonymous SNV 0.034 3 21 hm7G_associated_SNPs_2417 0 0 0 0 1 MT1H chr16:56704810 3'AG 56704810 Downstream 7bp 2384 chr1 12806478 12806478 1 + G T rs186035456 12806478 + 12806458 12806498 41 TCACTGGAAATTGGATGGAAGAGAGGAGAAAGGTAAGGAAA TCACTGGAAATTGGATGGAATAGAGGAGAAAGGTAAGGAAA Direct Loss 0.957922995846639 0 NA NA prediction 0.915845991693278 Functional Loss - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12806478 chr1:12806478 stopgain 1.000 1 21 hm7G_associated_SNPs_2418 0 0 0 0 1 C1orf158 chr1:12806489 5'GT 12806489 Upstream 12bp 2385 chr17 4648584 4648584 1 + G T UCEC 4648584 + 4648564 4648604 41 GACGGCCAGACCATGGCGGTGGCCACTGGAGGGGGCACCAG GACGGCCAGACCATGGCGGTTGCCACTGGAGGGGGCACCAG Direct Loss 0.957920967783038 0 NA NA prediction 0.915841935566075 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648584 chr17:4648584 synonymous SNV . 0 21 hm7G_associated_SNPs_2419 0 0 0 0 2 ZMYND15 chr17:4648510 3'AG 4648510 Downstream 75bp 2386 chr17 4648584 4648584 1 + G T UCEC 4648584 + 4648564 4648604 41 GACGGCCAGACCATGGCGGTGGCCACTGGAGGGGGCACCAG GACGGCCAGACCATGGCGGTTGCCACTGGAGGGGGCACCAG Direct Loss 0.957920967783038 0 NA NA prediction 0.915841935566075 Functional Loss - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648584 chr17:4648584 synonymous SNV . 0 21 hm7G_associated_SNPs_2419 0 0 0 0 2 ZMYND15 chr17:4648670 5'GT 4648670 Upstream 87bp 2387 chr19 36236834 36236834 1 + G A BLCA 36236834 + 36236814 36236854 41 CCCGGCCCCAGCGCAGCTATGAACCTGGAGCGAGTGTCCAA CCCGGCCCCAGCGCAGCTATAAACCTGGAGCGAGTGTCCAA Direct Loss 0.957889842712054 0 NA NA prediction 0.915779685424109 Functional Loss - PSENEN ENSG00000188223;ENSG00000205155 CDS Human other chr19:36236834 chr19:36236834 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2420 0 0 1 0 3 PSENEN chr19:36236736 3'AG 36236736 Downstream 99bp 2388 chr19 36236834 36236834 1 + G A BLCA 36236834 + 36236814 36236854 41 CCCGGCCCCAGCGCAGCTATGAACCTGGAGCGAGTGTCCAA CCCGGCCCCAGCGCAGCTATAAACCTGGAGCGAGTGTCCAA Direct Loss 0.957889842712054 0 NA NA prediction 0.915779685424109 Functional Loss - PSENEN ENSG00000188223;ENSG00000205155 CDS Human other chr19:36236834 chr19:36236834 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2420 0 0 1 0 3 PSENEN chr19:36236774 3'AG 36236774 Downstream 61bp 2389 chr19 36236834 36236834 1 + G A BLCA 36236834 + 36236814 36236854 41 CCCGGCCCCAGCGCAGCTATGAACCTGGAGCGAGTGTCCAA CCCGGCCCCAGCGCAGCTATAAACCTGGAGCGAGTGTCCAA Direct Loss 0.957889842712054 0 NA NA prediction 0.915779685424109 Functional Loss - PSENEN ENSG00000188223;ENSG00000205155 CDS Human other chr19:36236834 chr19:36236834 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2420 0 0 1 0 3 PSENEN chr19:36236892 5'GT 36236892 Upstream 59bp 2390 chr17 40948596 40948596 1 + G A HNSC 40948596 + 40948576 40948616 41 GCCGGGGATGTTGGCAGGATGGTGAGGGCGGGCCCAAGGGA GCCGGGGATGTTGGCAGGATAGTGAGGGCGGGCCCAAGGGA Direct Loss 0.957877178422191 0 NA NA prediction 0.915754356844383 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40948596 chr17:40948596 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2421 0 0 1 0 2 WNK4 chr17:40948499 3'AG 40948499 Downstream 98bp 2391 chr17 40948596 40948596 1 + G A HNSC 40948596 + 40948576 40948616 41 GCCGGGGATGTTGGCAGGATGGTGAGGGCGGGCCCAAGGGA GCCGGGGATGTTGGCAGGATAGTGAGGGCGGGCCCAAGGGA Direct Loss 0.957877178422191 0 NA NA prediction 0.915754356844383 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40948596 chr17:40948596 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2421 0 0 1 0 2 WNK4 chr17:40948596 5'GT 40948596 Upstream 1bp 2392 chr8 92090667 92090667 1 + G T UCEC 92090667 + 92090647 92090687 41 TTAACAGGAGCCAGACATATGGAAAGTGAGAAACTTGCTCA TTAACAGGAGCCAGACATATTGAAAGTGAGAAACTTGCTCA Direct Loss 0.957865685260726 0 NA NA prediction 0.915731370521452 Functional Loss - OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92090667 chr8:92090667 nonsynonymous SNV 0.771 0 21 hm7G_associated_SNPs_2422 0 0 1 0 1 OTUD6B chr8:92090584 3'AG 92090584 Downstream 84bp 2393 chr1 222920005 222920005 1 + G T UCEC 222920005 + 222919985 222920025 41 TCATGGAAGAATATAGCACAGAGGAGGAGGAGGAAGAGGAA TCATGGAAGAATATAGCACATAGGAGGAGGAGGAAGAGGAA Direct Loss 0.957853568075509 0 NA NA prediction 0.915707136151019 Functional Loss - FAM177B ENSG00000197520 CDS Human protein_coding chr1:222920005 chr1:222920005 stopgain 0.928 0 21 hm7G_associated_SNPs_2423 0 0 0 0 1 FAM177B chr1:222920061 5'GT 222920061 Upstream 57bp 2394 chr12 50349277 50349277 1 + G A rs143104356 50349277 + 50349257 50349297 41 AAGAGCCTGTCGGAGCGCCTGGCAGTGCTGAAGGGCCTGGA AAGAGCCTGTCGGAGCGCCTAGCAGTGCTGAAGGGCCTGGA Direct Loss 0.957837001408217 0 NA NA prediction 0.915674002816434 Functional Loss - AQP2 ENSG00000167580 CDS Human protein_coding chr12:50349277 chr12:50349277 synonymous SNV . 0 21 hm7G_associated_SNPs_2427 0 0 0 0 1 AQP2 chr12:50349182 3'AG 50349182 Downstream 96bp 2395 chr2 119739007 119739007 1 + G A SKCM 119739007 + 119738987 119739027 41 AGCAAAGGGGACAGGGGCATGAAAGGAGATGCAGGGGTCAT AGCAAAGGGGACAGGGGCATAAAAGGAGATGCAGGGGTCAT Direct Loss 0.957835969458109 0 NA NA prediction 0.915671938916219 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739007 chr2:119739007 nonsynonymous SNV 0.630 0 21 hm7G_associated_SNPs_2428 0 0 0 0 2 MARCO chr2:119738985 3'AG 119738985 Downstream 23bp 2396 chr2 119739007 119739007 1 + G A SKCM 119739007 + 119738987 119739027 41 AGCAAAGGGGACAGGGGCATGAAAGGAGATGCAGGGGTCAT AGCAAAGGGGACAGGGGCATAAAAGGAGATGCAGGGGTCAT Direct Loss 0.957835969458109 0 NA NA prediction 0.915671938916219 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739007 chr2:119739007 nonsynonymous SNV 0.630 0 21 hm7G_associated_SNPs_2428 0 0 0 0 2 MARCO chr2:119739083 5'GT 119739083 Upstream 77bp 2397 chrX 38546915 38546915 1 + G A LGG 38546915 + 38546895 38546935 41 ACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGGTAGGTG ACGGCCAATCAGTATGAGATAGTGTAAGGAGAAGGTAGGTG Direct Loss 0.957814157966607 0 NA NA prediction 0.915628315933214 Functional Loss - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38546915 chrX:38546915 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2429 0 0 1 0 2 TSPAN7 chrX:38546853 3'AG 38546853 Downstream 63bp 2398 chrX 38546915 38546915 1 + G A LGG 38546915 + 38546895 38546935 41 ACGGCCAATCAGTATGAGATGGTGTAAGGAGAAGGTAGGTG ACGGCCAATCAGTATGAGATAGTGTAAGGAGAAGGTAGGTG Direct Loss 0.957814157966607 0 NA NA prediction 0.915628315933214 Functional Loss - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38546915 chrX:38546915 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2429 0 0 1 0 2 TSPAN7 chrX:38546928 5'GT 38546928 Upstream 14bp 2399 chr20 36560175 36560175 1 + G A SKCM 36560175 + 36560155 36560195 41 TGTACGGAGCCACCGGGACTGGACCGACAAGCAGGCGTGGG TGTACGGAGCCACCGGGACTAGACCGACAAGCAGGCGTGGG Direct Loss 0.957796236676776 0 NA NA prediction 0.915592473353552 Functional Loss - VSTM2L ENSG00000132821 CDS Human protein_coding chr20:36560175 chr20:36560175 stopgain 1.000 1 21 hm7G_associated_SNPs_2431 0 0 0 0 1 VSTM2L chr20:36560206 5'GT 36560206 Upstream 32bp 2400 chr11 65829180 65829180 1 + G A BLCA 65829180 + 65829160 65829200 41 AAGGAGTTCGAGACACGACTGAAGGAGAAGAAGCCAGGAGA AAGGAGTTCGAGACACGACTAAAGGAGAAGAAGCCAGGAGA Direct Loss 0.957776196389934 0 NA NA prediction 0.915552392779869 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829180 chr11:65829180 synonymous SNV . 0 21 hm7G_associated_SNPs_2433 0 0 1 0 2 SF3B2 chr11:65829157 3'AG 65829157 Downstream 24bp 2401 chr11 65829180 65829180 1 + G A BLCA 65829180 + 65829160 65829200 41 AAGGAGTTCGAGACACGACTGAAGGAGAAGAAGCCAGGAGA AAGGAGTTCGAGACACGACTAAAGGAGAAGAAGCCAGGAGA Direct Loss 0.957776196389934 0 NA NA prediction 0.915552392779869 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65829180 chr11:65829180 synonymous SNV . 0 21 hm7G_associated_SNPs_2433 0 0 1 0 2 SF3B2 chr11:65829246 5'GT 65829246 Upstream 67bp 2402 chr11 66813260 66813260 1 + G A UCEC 66813260 + 66813240 66813280 41 GCAGGATGGGAGGAAGATGAGCAAAAAGAAGACAGCCGTGA GCAGGATGGGAGGAAGATGAACAAAAAGAAGACAGCCGTGA Direct Loss 0.957769165688559 0 NA NA prediction 0.915538331377119 Functional Loss - SYT12 ENSG00000173227 CDS Human protein_coding chr11:66813260 chr11:66813260 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2434 0 0 1 0 2 SYT12 chr11:66813215 3'AG 66813215 Downstream 46bp 2403 chr11 66813260 66813260 1 + G A UCEC 66813260 + 66813240 66813280 41 GCAGGATGGGAGGAAGATGAGCAAAAAGAAGACAGCCGTGA GCAGGATGGGAGGAAGATGAACAAAAAGAAGACAGCCGTGA Direct Loss 0.957769165688559 0 NA NA prediction 0.915538331377119 Functional Loss - SYT12 ENSG00000173227 CDS Human protein_coding chr11:66813260 chr11:66813260 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2434 0 0 1 0 2 SYT12 chr11:66813348 5'GT 66813348 Upstream 89bp 2404 chr1 173726252 173726252 1 + G A GBM 173726252 + 173726232 173726272 41 TTCTTGATGATCTGTTATATGCAGTAGGAGGCCATGATGGA TTCTTGATGATCTGTTATATACAGTAGGAGGCCATGATGGA Direct Loss 0.95776758710733 0 NA NA prediction 0.915535174214659 Functional Loss - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173726252 chr1:173726252 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2435 0 0 1 0 1 KLHL20 chr1:173726298 5'GT 173726298 Upstream 47bp 2405 chr7 134928104 134928104 1 + G A LIHC 134928104 + 134928084 134928124 41 TCAACCTGGAAGATGGGCATGCAAGCAGCTTAGAGGAGGTC TCAACCTGGAAGATGGGCATACAAGCAGCTTAGAGGAGGTC Direct Loss 0.957760610803736 0 NA NA prediction 0.915521221607472 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134928104 chr7:134928104 nonsynonymous SNV 0.974 0 21 hm7G_associated_SNPs_2436 0 0 0 0 2 STRA8 chr7:134928078 3'AG 134928078 Downstream 27bp 2406 chr7 134928104 134928104 1 + G A LIHC 134928104 + 134928084 134928124 41 TCAACCTGGAAGATGGGCATGCAAGCAGCTTAGAGGAGGTC TCAACCTGGAAGATGGGCATACAAGCAGCTTAGAGGAGGTC Direct Loss 0.957760610803736 0 NA NA prediction 0.915521221607472 Functional Loss - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134928104 chr7:134928104 nonsynonymous SNV 0.974 0 21 hm7G_associated_SNPs_2436 0 0 0 0 2 STRA8 chr7:134928162 5'GT 134928162 Upstream 59bp 2407 chr19 50947029 50947029 1 + G A SARC 50947029 + 50947009 50947049 41 GTGTTTGTGGGTGACCGGGTGGAAATGGCAGTGGAGGTGTC GTGTTTGTGGGTGACCGGGTAGAAATGGCAGTGGAGGTGTC Direct Loss 0.957746999789275 0 NA NA prediction 0.91549399957855 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50947029 chr19:50947029 synonymous SNV . 0 21 hm7G_associated_SNPs_2437 0 0 0 0 2 MYBPC2 chr19:50946968 3'AG 50946968 Downstream 62bp 2408 chr19 50947029 50947029 1 + G A SARC 50947029 + 50947009 50947049 41 GTGTTTGTGGGTGACCGGGTGGAAATGGCAGTGGAGGTGTC GTGTTTGTGGGTGACCGGGTAGAAATGGCAGTGGAGGTGTC Direct Loss 0.957746999789275 0 NA NA prediction 0.91549399957855 Functional Loss - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50947029 chr19:50947029 synonymous SNV . 0 21 hm7G_associated_SNPs_2437 0 0 0 0 2 MYBPC2 chr19:50947073 5'GT 50947073 Upstream 45bp 2409 chr10 99343414 99343414 1 + G A BLCA 99343414 + 99343394 99343434 41 AGCATCCTGAGCCGGGGGCTGAGCATAACGGGCTGGAGGGG AGCATCCTGAGCCGGGGGCTAAGCATAACGGGCTGGAGGGG Direct Loss 0.957707540587197 0 NA NA prediction 0.915415081174393 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99343414 chr10:99343414 nonsynonymous SNV 0.047 0 21 hm7G_associated_SNPs_2439 0 0 0 0 1 ANKRD2 chr10:99343333 3'AG 99343333 Downstream 82bp 2410 chr1 45224937 45224937 1 + G A rs139373762 45224937 + 45224917 45224957 41 CTGGAGGACGGCAAGCAACAGGTGCAAGTGGTGGGGCTGCA CTGGAGGACGGCAAGCAACAAGTGCAAGTGGTGGGGCTGCA Direct Loss 0.957696136643836 0 NA NA prediction 0.915392273287672 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45224937 chr1:45224937 synonymous SNV . 0 21 hm7G_associated_SNPs_2440 0 0 1 0 2 KIF2C chr1:45224878 3'AG 45224878 Downstream 60bp 2411 chr1 45224937 45224937 1 + G A rs139373762 45224937 + 45224917 45224957 41 CTGGAGGACGGCAAGCAACAGGTGCAAGTGGTGGGGCTGCA CTGGAGGACGGCAAGCAACAAGTGCAAGTGGTGGGGCTGCA Direct Loss 0.957696136643836 0 NA NA prediction 0.915392273287672 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45224937 chr1:45224937 synonymous SNV . 0 21 hm7G_associated_SNPs_2440 0 0 1 0 2 KIF2C chr1:45225020 5'GT 45225020 Upstream 84bp 2412 chr2 176965308 176965308 1 + G A STAD 176965308 + 176965288 176965328 41 AAGCGGAAACCCTACACGAAGCAGCAGATTGCGGAGTTGGA AAGCGGAAACCCTACACGAAACAGCAGATTGCGGAGTTGGA Direct Loss 0.957690076420146 0 NA NA prediction 0.915380152840292 Functional Loss - HOXD12 ENSG00000170178 CDS Human protein_coding chr2:176965308 chr2:176965308 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2441 0 0 0 0 1 HOXD12 chr2:176965250 3'AG 176965250 Downstream 59bp 2413 chr1 153615780 153615780 1 + G T LUAD 153615780 + 153615760 153615800 41 GTGGTGTTCGAGGTCGTGGAGGTCCTGGGAGAGGGGGCCTA GTGGTGTTCGAGGTCGTGGATGTCCTGGGAGAGGGGGCCTA Direct Loss 0.957652828723615 0 NA NA prediction 0.91530565744723 Functional Loss - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153615780 chr1:153615780 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2444 0 0 1 0 2 CHTOP chr1:153615703 3'AG 153615703 Downstream 78bp 2414 chr1 153615780 153615780 1 + G T LUAD 153615780 + 153615760 153615800 41 GTGGTGTTCGAGGTCGTGGAGGTCCTGGGAGAGGGGGCCTA GTGGTGTTCGAGGTCGTGGATGTCCTGGGAGAGGGGGCCTA Direct Loss 0.957652828723615 0 NA NA prediction 0.91530565744723 Functional Loss - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153615780 chr1:153615780 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2444 0 0 1 0 2 CHTOP chr1:153615840 5'GT 153615840 Upstream 61bp 2415 chr14 24909989 24909989 1 - C A STAD 24909989 - 24909969 24910009 41 GCCAGGTGGTGGTGCGCTCAGGTGAGAAACGGGCCTGGGTA GCCAGGTGGTGGTGCGCTCATGTGAGAAACGGGCCTGGGTA Direct Loss 0.957645498483313 0 NA NA prediction 0.915290996966627 Functional Loss - SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24909989 chr14:24909989 nonsynonymous SNV 0.337 4 21 hm7G_associated_SNPs_2445 0 0 1 0 1 SDR39U1 chr14:24909989 5'GT 24909989 Upstream 1bp 2416 chr2 101619193 101619193 1 + G T CESC 101619193 + 101619173 101619213 41 GCAAAGAAGGGTGGCGAGAAGAAAAAGGGCCGTTCTGCCAT GCAAAGAAGGGTGGCGAGAATAAAAAGGGCCGTTCTGCCAT Direct Loss 0.957643433424861 0 NA NA prediction 0.915286866849723 Functional Loss - RPL31 ENSG00000071082 CDS Human protein_coding chr2:101619193 chr2:101619193 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2446 0 0 1 0 1 RPL31 chr2:101619164 3'AG 101619164 Downstream 30bp 2417 chr17 48823140 48823140 1 + G T LUAD 48823140 + 48823120 48823160 41 GAGCGTCTAAAAAAGGAGAAGCAAGAAAGAGAAGAAAGAGA GAGCGTCTAAAAAAGGAGAATCAAGAAAGAGAAGAAAGAGA Direct Loss 0.957640678355865 0 NA NA prediction 0.91528135671173 Functional Loss - LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48823140 chr17:48823140 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2447 0 0 1 0 1 LUC7L3 chr17:48823081 3'AG 48823081 Downstream 60bp 2418 chr11 66043605 66043605 1 + G T HNSC 66043605 + 66043585 66043625 41 CGTTCATGACCATGGCTGCTGAAATCAAAAAGCGGATGGGG CGTTCATGACCATGGCTGCTTAAATCAAAAAGCGGATGGGG Direct Loss 0.957614002036675 0 NA NA prediction 0.91522800407335 Functional Loss - RAB1B ENSG00000174903 CDS Human protein_coding chr11:66043605 chr11:66043605 stopgain 0.993 1 21 hm7G_associated_SNPs_2448 0 0 1 0 1 RAB1B chr11:66043515 3'AG 66043515 Downstream 91bp 2419 chrX 69503810 69503810 1 + G T THYM 69503810 + 69503790 69503830 41 ATTCGTCCAGACAAGTCACTGCAGAACAGGGTGAAGAAAAA ATTCGTCCAGACAAGTCACTTCAGAACAGGGTGAAGAAAAA Direct Loss 0.957610593567378 0 NA NA prediction 0.915221187134755 Functional Loss - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69503810 chrX:69503810 nonsynonymous SNV 0.099 0 21 hm7G_associated_SNPs_2449 0 0 0 0 2 RAB41 chrX:69503800 3'AG 69503800 Downstream 11bp 2420 chrX 69503810 69503810 1 + G T THYM 69503810 + 69503790 69503830 41 ATTCGTCCAGACAAGTCACTGCAGAACAGGGTGAAGAAAAA ATTCGTCCAGACAAGTCACTTCAGAACAGGGTGAAGAAAAA Direct Loss 0.957610593567378 0 NA NA prediction 0.915221187134755 Functional Loss - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69503810 chrX:69503810 nonsynonymous SNV 0.099 0 21 hm7G_associated_SNPs_2449 0 0 0 0 2 RAB41 chrX:69503893 5'GT 69503893 Upstream 84bp 2421 chr1 201924657 201924657 1 + G A SKCM 201924657 + 201924637 201924677 41 CGCGGCATTGGAGTCAAGATGGAGGAGTACGCGCGAGAGCC CGCGGCATTGGAGTCAAGATAGAGGAGTACGCGCGAGAGCC Direct Loss 0.957607774220652 0 NA NA prediction 0.915215548441304 Functional Loss - TIMM17A ENSG00000134375 CDS Human protein_coding chr1:201924657 chr1:201924657 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2450 0 0 1 0 1 TIMM17A chr1:201924680 5'GT 201924680 Upstream 24bp 2422 chr22 27024347 27024347 1 + G C HNSC 27024347 + 27024327 27024367 41 TATCCTTCCCTCCAGGCCATGGGATGGGAAGGCAATGAAGT TATCCTTCCCTCCAGGCCATCGGATGGGAAGGCAATGAAGT Direct Loss 0.957593999297815 0 NA NA prediction 0.91518799859563 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27024347 chr22:27024347 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2452 0 0 0 0 2 CRYBA4 chr22:27024252 3'AG 27024252 Downstream 96bp 2423 chr22 27024347 27024347 1 + G C HNSC 27024347 + 27024327 27024367 41 TATCCTTCCCTCCAGGCCATGGGATGGGAAGGCAATGAAGT TATCCTTCCCTCCAGGCCATCGGATGGGAAGGCAATGAAGT Direct Loss 0.957593999297815 0 NA NA prediction 0.91518799859563 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27024347 chr22:27024347 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2452 0 0 0 0 2 CRYBA4 chr22:27024394 5'GT 27024394 Upstream 48bp 2424 chr11 65123330 65123330 1 + G A SKCM 65123330 + 65123310 65123350 41 GCCCTGTCCCTGGCCGAGAAGATCCAGGTGCTGGAACTCCT GCCCTGTCCCTGGCCGAGAAAATCCAGGTGCTGGAACTCCT Direct Loss 0.957591842898296 0 NA NA prediction 0.915183685796591 Functional Loss - TIGD3 ENSG00000173825 CDS Human protein_coding chr11:65123330 chr11:65123330 synonymous SNV . 0 21 hm7G_associated_SNPs_2453 0 0 0 0 1 TIGD3 chr11:65123264 3'AG 65123264 Downstream 67bp 2425 chr20 61594063 61594063 1 + G T LUSC 61594063 + 61594043 61594083 41 TTCTCCGGCGGCCTCACCTTGCTTTGGGTGTGGTACGTGTA TTCTCCGGCGGCCTCACCTTTCTTTGGGTGTGGTACGTGTA Direct Loss 0.957583122718853 0 NA NA prediction 0.915166245437707 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594063 chr20:61594063 nonsynonymous SNV 0.967 1 21 hm7G_associated_SNPs_2455 0 0 1 0 2 SLC17A9 chr20:61593976 3'AG 61593976 Downstream 88bp 2426 chr20 61594063 61594063 1 + G T LUSC 61594063 + 61594043 61594083 41 TTCTCCGGCGGCCTCACCTTGCTTTGGGTGTGGTACGTGTA TTCTCCGGCGGCCTCACCTTTCTTTGGGTGTGGTACGTGTA Direct Loss 0.957583122718853 0 NA NA prediction 0.915166245437707 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594063 chr20:61594063 nonsynonymous SNV 0.967 1 21 hm7G_associated_SNPs_2455 0 0 1 0 2 SLC17A9 chr20:61594106 5'GT 61594106 Upstream 44bp 2427 chr14 70477625 70477625 1 + G C LUAD 70477625 + 70477605 70477645 41 GGCTACTGCTGGTGTGTGCTGGTGGACACAGGGCGCCCGCT GGCTACTGCTGGTGTGTGCTCGTGGACACAGGGCGCCCGCT Direct Loss 0.95753523982547 0 NA NA prediction 0.915070479650941 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70477625 chr14:70477625 synonymous SNV . 0 21 hm7G_associated_SNPs_2458 0 0 1 0 1 SMOC1 chr14:70477663 5'GT 70477663 Upstream 39bp 2428 chr1 46775859 46775859 1 + G A BLCA 46775859 + 46775839 46775879 41 ACAGTGAGAGAGCAATGCGAGCAGTTGGAGAAATGTGTAAA ACAGTGAGAGAGCAATGCGAACAGTTGGAGAAATGTGTAAA Direct Loss 0.957521185540506 0 NA NA prediction 0.915042371081012 Functional Loss - UQCRH ENSG00000173660 CDS Human protein_coding chr1:46775859 chr1:46775859 synonymous SNV . 0 21 hm7G_associated_SNPs_2461 0 0 1 0 1 UQCRH chr1:46775827 3'AG 46775827 Downstream 33bp 2429 chr17 48458180 48458180 1 + G A rs34543262 48458180 + 48458160 48458200 41 AATTTGCTCGCAGACATACAGGTGCGCCGTGGGGAAGGTGT AATTTGCTCGCAGACATACAAGTGCGCCGTGGGGAAGGTGT Direct Loss 0.957520255869561 0 NA NA prediction 0.915040511739123 Functional Loss - EME1 ENSG00000154920 CDS Human protein_coding chr17:48458180 chr17:48458180 synonymous SNV . 0 21 hm7G_associated_SNPs_2462 0 0 1 0 1 EME1 chr17:48458124 3'AG 48458124 Downstream 57bp 2430 chr3 69151017 69151017 1 + G A COAD 69151017 + 69150997 69151037 41 AGTCCCTTCAACATGATCCTGGGAGGAATCGTGGTGGTGCT AGTCCCTTCAACATGATCCTAGGAGGAATCGTGGTGGTGCT Direct Loss 0.957494033127229 0 NA NA prediction 0.914988066254458 Functional Loss - ARL6IP5 ENSG00000144746 CDS Human protein_coding chr3:69151017 chr3:69151017 synonymous SNV . 0 21 hm7G_associated_SNPs_2466 0 0 1 0 1 ARL6IP5 chr3:69150990 3'AG 69150990 Downstream 28bp 2431 chr2 101188250 101188250 1 + G A SARC 101188250 + 101188230 101188270 41 GTGTTTGGCGGCATGAACCTGACAAGAGATGGTAAGGGCTC GTGTTTGGCGGCATGAACCTAACAAGAGATGGTAAGGGCTC Direct Loss 0.957480956461026 0 NA NA prediction 0.914961912922053 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101188250 chr2:101188250 synonymous SNV . 0 21 hm7G_associated_SNPs_2467 0 0 1 0 1 PDCL3 chr2:101188260 5'GT 101188260 Upstream 11bp 2432 chr1 99470195 99470195 1 + G A LUSC 99470195 + 99470175 99470215 41 ACCATCTGGAAATAGAGCATGCTGCTGGTGAGCGCCGCGGG ACCATCTGGAAATAGAGCATACTGCTGGTGAGCGCCGCGGG Direct Loss 0.957479398196873 0 NA NA prediction 0.914958796393747 Functional Loss - PLPPR5 ENSG00000117598 CDS Human protein_coding chr1:99470195 chr1:99470195 synonymous SNV . 0 21 hm7G_associated_SNPs_2469 0 0 0 6 1 PLPPR5 chr1:99470201 5'GT 99470201 Upstream 7bp 2433 chr18 21098907 21098907 1 + G A LUSC 21098907 + 21098887 21098927 41 TCATTCTCGGACCTCCAACAGCACAGGAGCGGAGGTGGTCC TCATTCTCGGACCTCCAACAACACAGGAGCGGAGGTGGTCC Direct Loss 0.957474332563287 0 NA NA prediction 0.914948665126574 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21098907 chr18:21098907 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_2470 0 0 0 0 2 C18orf8 chr18:21098854 3'AG 21098854 Downstream 54bp 2434 chr18 21098907 21098907 1 + G A LUSC 21098907 + 21098887 21098927 41 TCATTCTCGGACCTCCAACAGCACAGGAGCGGAGGTGGTCC TCATTCTCGGACCTCCAACAACACAGGAGCGGAGGTGGTCC Direct Loss 0.957474332563287 0 NA NA prediction 0.914948665126574 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21098907 chr18:21098907 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_2470 0 0 0 0 2 C18orf8 chr18:21098943 5'GT 21098943 Upstream 37bp 2435 chr16 28963519 28963519 1 + G A LAML 28963519 + 28963499 28963539 41 AACTCTACCCTCCAGGGGATGAGGAAGGTAAGGGAGGGCCT AACTCTACCCTCCAGGGGATAAGGAAGGTAAGGGAGGGCCT Direct Loss 0.9574451653959 0 NA NA prediction 0.9148903307918 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28963519 chr16:28963519 nonsynonymous SNV 0.810 3 21 hm7G_associated_SNPs_2471 0 0 1 0 2 NFATC2IP chr16:28963453 3'AG 28963453 Downstream 67bp 2436 chr16 28963519 28963519 1 + G A LAML 28963519 + 28963499 28963539 41 AACTCTACCCTCCAGGGGATGAGGAAGGTAAGGGAGGGCCT AACTCTACCCTCCAGGGGATAAGGAAGGTAAGGGAGGGCCT Direct Loss 0.9574451653959 0 NA NA prediction 0.9148903307918 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28963519 chr16:28963519 nonsynonymous SNV 0.810 3 21 hm7G_associated_SNPs_2471 0 0 1 0 2 NFATC2IP chr16:28963525 5'GT 28963525 Upstream 7bp 2437 chr12 6566693 6566693 1 + G A UCEC 6566693 + 6566673 6566713 41 ATCAGTGTGGAGTGGCGACTGCAGCACAAGGGCAGGGGTCA ATCAGTGTGGAGTGGCGACTACAGCACAAGGGCAGGGGTCA Direct Loss 0.957434853966715 0 NA NA prediction 0.914869707933429 Functional Loss - TAPBPL ENSG00000139192 CDS Human protein_coding chr12:6566693 chr12:6566693 synonymous SNV . 0 21 hm7G_associated_SNPs_2474 0 0 1 0 1 TAPBPL chr12:6566709 5'GT 6566709 Upstream 17bp 2438 chr18 12718545 12718545 1 + G T UCEC 12718545 + 12718525 12718565 41 AAGCCATTCTGTGAAAAACTGCTTTCCTGGGTGAAAAGCAG AAGCCATTCTGTGAAAAACTTCTTTCCTGGGTGAAAAGCAG Direct Loss 0.95741650526835 0 NA NA prediction 0.9148330105367 Functional Loss - PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718545 chr18:12718545 synonymous SNV . 0 21 hm7G_associated_SNPs_2475 0 0 1 0 2 PSMG2 chr18:12718516 3'AG 12718516 Downstream 30bp 2439 chr18 12718545 12718545 1 + G T UCEC 12718545 + 12718525 12718565 41 AAGCCATTCTGTGAAAAACTGCTTTCCTGGGTGAAAAGCAG AAGCCATTCTGTGAAAAACTTCTTTCCTGGGTGAAAAGCAG Direct Loss 0.95741650526835 0 NA NA prediction 0.9148330105367 Functional Loss - PSMG2 ENSG00000128789 CDS Human protein_coding chr18:12718545 chr18:12718545 synonymous SNV . 0 21 hm7G_associated_SNPs_2475 0 0 1 0 2 PSMG2 chr18:12718634 5'GT 12718634 Upstream 90bp 2440 chr1 212788505 212788505 1 + G A PRAD 212788505 + 212788485 212788525 41 TCAAGGAAGAGCTGAGGTTTGCCATCCAGAACAAGCACCTC TCAAGGAAGAGCTGAGGTTTACCATCCAGAACAAGCACCTC Direct Loss 0.95739620749935 0 NA NA prediction 0.9147924149987 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788505 chr1:212788505 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_2476 0 0 1 0 3 ATF3 chr1:212788408 3'AG 212788408 Downstream 98bp 2441 chr1 212788505 212788505 1 + G A PRAD 212788505 + 212788485 212788525 41 TCAAGGAAGAGCTGAGGTTTGCCATCCAGAACAAGCACCTC TCAAGGAAGAGCTGAGGTTTACCATCCAGAACAAGCACCTC Direct Loss 0.95739620749935 0 NA NA prediction 0.9147924149987 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788505 chr1:212788505 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_2476 0 0 1 0 3 ATF3 chr1:212788490 3'AG 212788490 Downstream 16bp 2442 chr1 212788505 212788505 1 + G A PRAD 212788505 + 212788485 212788525 41 TCAAGGAAGAGCTGAGGTTTGCCATCCAGAACAAGCACCTC TCAAGGAAGAGCTGAGGTTTACCATCCAGAACAAGCACCTC Direct Loss 0.95739620749935 0 NA NA prediction 0.9147924149987 Functional Loss - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788505 chr1:212788505 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_2476 0 0 1 0 3 ATF3 chr1:212788603 5'GT 212788603 Upstream 99bp 2443 chr16 30419416 30419416 1 + G T UCEC 30419416 + 30419396 30419436 41 GAGGAAGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCT GAGGAAGAGGAGGAGGAAGATATGCAGGAGGAGATGGTGCT Direct Loss 0.957373840890673 0 NA NA prediction 0.914747681781346 Functional Loss - ZNF771 ENSG00000179965 CDS Human protein_coding chr16:30419416 chr16:30419416 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2479 0 0 1 0 3 ZNF771 chr16:30419353 3'AG 30419353 Downstream 64bp 2444 chr16 30419416 30419416 1 + G T UCEC 30419416 + 30419396 30419436 41 GAGGAAGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCT GAGGAAGAGGAGGAGGAAGATATGCAGGAGGAGATGGTGCT Direct Loss 0.957373840890673 0 NA NA prediction 0.914747681781346 Functional Loss - ZNF771 ENSG00000179965 CDS Human protein_coding chr16:30419416 chr16:30419416 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2479 0 0 1 0 3 ZNF771 chr16:30419366 3'AG 30419366 Downstream 51bp 2445 chr16 30419416 30419416 1 + G T UCEC 30419416 + 30419396 30419436 41 GAGGAAGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCT GAGGAAGAGGAGGAGGAAGATATGCAGGAGGAGATGGTGCT Direct Loss 0.957373840890673 0 NA NA prediction 0.914747681781346 Functional Loss - ZNF771 ENSG00000179965 CDS Human protein_coding chr16:30419416 chr16:30419416 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2479 0 0 1 0 3 ZNF771 chr16:30419515 5'GT 30419515 Upstream 100bp 2446 chr20 35177542 35177542 1 + G A CESC 35177542 + 35177522 35177562 41 TGGGTGACCGCTTCACAGATGAGGAAGTGGACGAGATGTAC TGGGTGACCGCTTCACAGATAAGGAAGTGGACGAGATGTAC Direct Loss 0.957344844568 0 NA NA prediction 0.914689689136 Functional Loss - MYL9 ENSG00000101335 CDS Human protein_coding chr20:35177542 chr20:35177542 nonsynonymous SNV 0.818 4 21 hm7G_associated_SNPs_2480 0 0 0 0 1 MYL9 chr20:35177480 3'AG 35177480 Downstream 63bp 2447 chr12 54676365 54676365 1 + G T OV 54676365 + 54676345 54676385 41 TCATGTCTTAAGGTCGAAGTGGTTCTGGAAACTTTGGTGGT TCATGTCTTAAGGTCGAAGTTGTTCTGGAAACTTTGGTGGT Direct Loss 0.957328846415499 0 NA NA prediction 0.914657692830998 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54676365 chr12:54676365 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2482 0 0 1 0 3 HNRNPA1 chr12:54676357 3'AG 54676357 Downstream 9bp 2448 chr12 54676365 54676365 1 + G T OV 54676365 + 54676345 54676385 41 TCATGTCTTAAGGTCGAAGTGGTTCTGGAAACTTTGGTGGT TCATGTCTTAAGGTCGAAGTTGTTCTGGAAACTTTGGTGGT Direct Loss 0.957328846415499 0 NA NA prediction 0.914657692830998 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54676365 chr12:54676365 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2482 0 0 1 0 3 HNRNPA1 chr12:54676380 5'GT 54676380 Upstream 16bp 2449 chr12 54676365 54676365 1 + G T OV 54676365 + 54676345 54676385 41 TCATGTCTTAAGGTCGAAGTGGTTCTGGAAACTTTGGTGGT TCATGTCTTAAGGTCGAAGTTGTTCTGGAAACTTTGGTGGT Direct Loss 0.957328846415499 0 NA NA prediction 0.914657692830998 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54676365 chr12:54676365 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2482 0 0 1 0 3 HNRNPA1 chr12:54676449 5'GT 54676449 Upstream 85bp 2450 chr4 166418720 166418720 1 + G A SKCM 166418720 + 166418700 166418740 41 GAAGAGGAGAAGGAAGAATTGATGGAATGGTGGAAAATGAT GAAGAGGAGAAGGAAGAATTAATGGAATGGTGGAAAATGAT Direct Loss 0.95732236659126 0 NA NA prediction 0.914644733182521 Functional Loss - CPE ENSG00000109472 CDS Human protein_coding chr4:166418720 chr4:166418720 synonymous SNV . 0 21 hm7G_associated_SNPs_2483 0 0 1 0 1 CPE chr4:166418664 3'AG 166418664 Downstream 57bp 2451 chr21 45542081 45542081 1 + G C BRCA 45542081 + 45542061 45542101 41 TGGCTGTGACTTTTCGCCCTGATGGTGCGGAGCTGGCTGTG TGGCTGTGACTTTTCGCCCTCATGGTGCGGAGCTGGCTGTG Direct Loss 0.957322137302615 0 NA NA prediction 0.914644274605229 Functional Loss - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45542081 chr21:45542081 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_2484 0 0 1 0 1 PWP2 chr21:45542058 3'AG 45542058 Downstream 24bp 2452 chr19 15124507 15124507 1 + G A UCEC 15124507 + 15124487 15124527 41 CCTGACAAAGCTGACAGTATGCTTACATGGGAGAAAGAGGA CCTGACAAAGCTGACAGTATACTTACATGGGAGAAAGAGGA Direct Loss 0.957320488855805 0 NA NA prediction 0.91464097771161 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15124507 chr19:15124507 nonsynonymous SNV 0.667 1 21 hm7G_associated_SNPs_2485 0 0 0 0 2 CCDC105 chr19:15124484 3'AG 15124484 Downstream 24bp 2453 chr19 15124507 15124507 1 + G A UCEC 15124507 + 15124487 15124527 41 CCTGACAAAGCTGACAGTATGCTTACATGGGAGAAAGAGGA CCTGACAAAGCTGACAGTATACTTACATGGGAGAAAGAGGA Direct Loss 0.957320488855805 0 NA NA prediction 0.91464097771161 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15124507 chr19:15124507 nonsynonymous SNV 0.667 1 21 hm7G_associated_SNPs_2485 0 0 0 0 2 CCDC105 chr19:15124588 5'GT 15124588 Upstream 82bp 2454 chr15 41853775 41853775 1 + G A GBM 41853775 + 41853755 41853795 41 CTCTGACGCCGGCCGGTACTGGTGCCAGGTGGAGGATGGGG CTCTGACGCCGGCCGGTACTAGTGCCAGGTGGAGGATGGGG Direct Loss 0.95729906500444 0 NA NA prediction 0.91459813000888 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41853775 chr15:41853775 stopgain 0.994 0 21 hm7G_associated_SNPs_2487 0 0 1 0 2 TYRO3 chr15:41853737 3'AG 41853737 Downstream 39bp 2455 chr15 41853775 41853775 1 + G A GBM 41853775 + 41853755 41853795 41 CTCTGACGCCGGCCGGTACTGGTGCCAGGTGGAGGATGGGG CTCTGACGCCGGCCGGTACTAGTGCCAGGTGGAGGATGGGG Direct Loss 0.95729906500444 0 NA NA prediction 0.91459813000888 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41853775 chr15:41853775 stopgain 0.994 0 21 hm7G_associated_SNPs_2487 0 0 1 0 2 TYRO3 chr15:41853837 5'GT 41853837 Upstream 63bp 2456 chr12 49937975 49937975 1 + G T LGG 49937975 + 49937955 49937995 41 CAGTACTTCGGGGCCCATCTGCTGAAGACGGTGCGCCTGCT CAGTACTTCGGGGCCCATCTTCTGAAGACGGTGCGCCTGCT Direct Loss 0.957274372740471 0 NA NA prediction 0.914548745480941 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49937975 chr12:49937975 synonymous SNV . 0 21 hm7G_associated_SNPs_2490 0 0 0 0 1 KCNH3 chr12:49937958 3'AG 49937958 Downstream 18bp 2457 chr20 56735774 56735774 1 + G T COAD 56735774 + 56735754 56735794 41 GCTTCATCGGCTGGAGATCTGCAGTGCCAGGCCTGAACAAG GCTTCATCGGCTGGAGATCTTCAGTGCCAGGCCTGAACAAG Direct Loss 0.957264796450124 0 NA NA prediction 0.914529592900248 Functional Loss - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56735774 chr20:56735774 nonsynonymous SNV 0.117 0 21 hm7G_associated_SNPs_2491 0 0 0 0 1 C20orf85 chr20:56735717 3'AG 56735717 Downstream 58bp 2458 chr6 134301357 134301357 1 + G T SARC 134301357 + 134301337 134301377 41 ATTTAAACTTAAGGAAGATTGCTTTGGAAGGAGCAAATGTA ATTTAAACTTAAGGAAGATTTCTTTGGAAGGAGCAAATGTA Direct Loss 0.957253987280781 0 NA NA prediction 0.914507974561563 Functional Loss - TBPL1 ENSG00000028839 CDS Human protein_coding chr6:134301357 chr6:134301357 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2492 0 0 1 0 1 TBPL1 chr6:134301398 5'GT 134301398 Upstream 42bp 2459 chr2 54531833 54531833 1 + G T LIHC 54531833 + 54531813 54531853 41 GTTTTTTTATAGGAAGTCCTGGCTGAGCAAGGTTGGAAGCC GTTTTTTTATAGGAAGTCCTTGCTGAGCAAGGTTGGAAGCC Direct Loss 0.957244144215403 0 NA NA prediction 0.914488288430806 Functional Loss - ACYP2 ENSG00000170634 CDS Human protein_coding chr2:54531833 chr2:54531833 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2493 0 0 0 0 1 ACYP2 chr2:54531825 3'AG 54531825 Downstream 9bp 2460 chr11 47605943 47605943 1 + G A BLCA 47605943 + 47605923 47605963 41 GAGTTCCGCAAATTTGACCTGAACAGCCCCTGGGAGGCTTT GAGTTCCGCAAATTTGACCTAAACAGCCCCTGGGAGGCTTT Direct Loss 0.957240790745441 0 NA NA prediction 0.914481581490883 Functional Loss - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47605943 chr11:47605943 synonymous SNV . 0 21 hm7G_associated_SNPs_2494 0 0 1 0 1 NDUFS3 chr11:47605866 3'AG 47605866 Downstream 78bp 2461 chr19 34710646 34710646 1 + G A HNSC 34710646 + 34710626 34710666 41 AACAGGAGAAGCCTGTAAATGGTGAAGATAAAGGAGACTCA AACAGGAGAAGCCTGTAAATAGTGAAGATAAAGGAGACTCA Direct Loss 0.957239250054622 0 NA NA prediction 0.914478500109243 Functional Loss - LSM14A ENSG00000257103 CDS Human protein_coding chr19:34710646 chr19:34710646 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2495 0 0 1 0 1 LSM14A chr19:34710611 3'AG 34710611 Downstream 36bp 2462 chr6 139097273 139097273 1 + G T UCEC 139097273 + 139097253 139097293 41 AAACAATGGAAGAGCGGAAAGTGAAGAGGAGGAGTCCTAAG AAACAATGGAAGAGCGGAAATTGAAGAGGAGGAGTCCTAAG Direct Loss 0.957211906009681 0 NA NA prediction 0.914423812019361 Functional Loss - CCDC28A ENSG00000024862 CDS Human protein_coding chr6:139097273 chr6:139097273 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_2497 0 0 1 0 1 CCDC28A chr6:139097216 3'AG 139097216 Downstream 58bp 2463 chr8 33354780 33354780 1 + G T STAD 33354780 + 33354760 33354800 41 AAAGAGAATTTGTCGAAGATGGTGAGGTAGATGAGAGTGAC AAAGAGAATTTGTCGAAGATTGTGAGGTAGATGAGAGTGAC Direct Loss 0.957193427597282 0 NA NA prediction 0.914386855194563 Functional Loss - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33354780 chr8:33354780 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_2499 0 0 1 0 2 MAK16 chr8:33354750 3'AG 33354750 Downstream 31bp 2464 chr8 33354780 33354780 1 + G T STAD 33354780 + 33354760 33354800 41 AAAGAGAATTTGTCGAAGATGGTGAGGTAGATGAGAGTGAC AAAGAGAATTTGTCGAAGATTGTGAGGTAGATGAGAGTGAC Direct Loss 0.957193427597282 0 NA NA prediction 0.914386855194563 Functional Loss - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33354780 chr8:33354780 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_2499 0 0 1 0 2 MAK16 chr8:33354815 5'GT 33354815 Upstream 36bp 2465 chr10 112641116 112641116 1 + G A STAD 112641116 + 112641096 112641136 41 TTAACGAAGCTAGAATTAATGCCAAGGCAAAAAGGCGACTA TTAACGAAGCTAGAATTAATACCAAGGCAAAAAGGCGACTA Direct Loss 0.957178000823058 0 NA NA prediction 0.914356001646116 Functional Loss - PDCD4 ENSG00000150593 CDS Human protein_coding chr10:112641116 chr10:112641116 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2501 0 0 1 0 1 PDCD4 chr10:112641033 3'AG 112641033 Downstream 84bp 2466 chr19 38873943 38873943 1 + G A STAD 38873943 + 38873923 38873963 41 TACAGTTTTGCCAGCCAGCAGCAGAAGCCGGAAGACACCAC TACAGTTTTGCCAGCCAGCAACAGAAGCCGGAAGACACCAC Direct Loss 0.957161243566223 0 NA NA prediction 0.914322487132446 Functional Loss - PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38873943 chr19:38873943 synonymous SNV . 0 21 hm7G_associated_SNPs_2502 0 0 1 0 1 PSMD8 chr19:38873893 3'AG 38873893 Downstream 51bp 2467 chr1 161185114 161185114 1 + G A LUSC 161185114 + 161185094 161185134 41 GCCGATCTCCAGCCCAAGATGATTCCAGCAGTGGTCTTGCT GCCGATCTCCAGCCCAAGATAATTCCAGCAGTGGTCTTGCT Direct Loss 0.957152791371972 0 NA NA prediction 0.914305582743943 Functional Loss - FCER1G ENSG00000158869 CDS Human protein_coding chr1:161185114 chr1:161185114 nonsynonymous SNV 0.982 0 21 hm7G_associated_SNPs_2503 0 0 1 0 1 FCER1G chr1:161185160 5'GT 161185160 Upstream 47bp 2468 chr6 44219926 44219926 1 + G A rs35518699 44219926 + 44219906 44219946 41 GAGGATGAGGAGGAGAAGAAGAAGATGGAAGAGAGCAAGGC GAGGATGAGGAGGAGAAGAAAAAGATGGAAGAGAGCAAGGC Direct Loss 0.95713406045919 0 NA NA prediction 0.914268120918379 Functional Loss - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219926 chr6:44219926 synonymous SNV . 0 21 hm7G_associated_SNPs_2504 0 0 1 0 1 HSP90AB1 chr6:44220004 5'GT 44220004 Upstream 79bp 2469 chr12 96259806 96259806 1 + G C ESCA 96259806 + 96259786 96259826 41 TAATAATGTCCTTTATATCAGAGGTGTGGAAGAAGAGGAAG TAATAATGTCCTTTATATCACAGGTGTGGAAGAAGAGGAAG Direct Loss 0.957129618528044 0 NA NA prediction 0.914259237056088 Functional Loss - SNRPF ENSG00000139343 CDS Human protein_coding chr12:96259806 chr12:96259806 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2505 0 0 1 0 1 SNRPF chr12:96259783 3'AG 96259783 Downstream 24bp 2470 chr8 39771493 39771493 1 + G T SARC 39771493 + 39771473 39771513 41 TCAGTAAAGAGTACCATATTGATGAAGAAGTGGGCTTTGCT TCAGTAAAGAGTACCATATTTATGAAGAAGTGGGCTTTGCT Direct Loss 0.957122109420057 0 NA NA prediction 0.914244218840114 Functional Loss - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39771493 chr8:39771493 nonsynonymous SNV 0.604 2 21 hm7G_associated_SNPs_2507 0 0 0 0 1 IDO1 chr8:39771528 5'GT 39771528 Upstream 36bp 2471 chr19 54444782 54444782 1 + G T LUAD 54444782 + 54444762 54444802 41 AGCATCAACGACGAGGTCATGAACAGGCCCAGCAGCTCTGA AGCATCAACGACGAGGTCATTAACAGGCCCAGCAGCTCTGA Direct Loss 0.957109544243107 0 NA NA prediction 0.914219088486213 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54444782 chr19:54444782 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2508 0 0 0 0 2 CACNG7 chr19:54444724 3'AG 54444724 Downstream 59bp 2472 chr19 54444782 54444782 1 + G T LUAD 54444782 + 54444762 54444802 41 AGCATCAACGACGAGGTCATGAACAGGCCCAGCAGCTCTGA AGCATCAACGACGAGGTCATTAACAGGCCCAGCAGCTCTGA Direct Loss 0.957109544243107 0 NA NA prediction 0.914219088486213 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54444782 chr19:54444782 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2508 0 0 0 0 2 CACNG7 chr19:54444869 5'GT 54444869 Upstream 88bp 2473 chr19 51361819 51361819 1 + G A LIHC 51361819 + 51361799 51361839 41 CCAAGTTCATGCTGTGTGCTGGACGCTGGACAGGGGGCAAA CCAAGTTCATGCTGTGTGCTAGACGCTGGACAGGGGGCAAA Direct Loss 0.957104147051282 0 NA NA prediction 0.914208294102564 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361819 chr19:51361819 nonsynonymous SNV 0.161 4 21 hm7G_associated_SNPs_2509 0 0 0 0 1 KLK3 chr19:51361851 5'GT 51361851 Upstream 33bp 2474 chrX 153421999 153421999 1 + G A DLBC 153421999 + 153421979 153422019 41 CCCGTTATCTATGTCTTTATGAACCGGCAGGTAAGCAACAC CCCGTTATCTATGTCTTTATAAACCGGCAGGTAAGCAACAC Direct Loss 0.957070761228341 0 NA NA prediction 0.914141522456683 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153421999 chrX:153421999 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2510 0 0 0 0 1 OPN1LW chrX:153422008 5'GT 153422008 Upstream 10bp 2475 chr20 17587741 17587741 1 + G A LUSC 17587741 + 17587721 17587761 41 TCAATCGGGCTTGTATTGCTGAAAAGTTAGGTGGATCCTTA TCAATCGGGCTTGTATTGCTAAAAAGTTAGGTGGATCCTTA Direct Loss 0.957061969876441 0 NA NA prediction 0.914123939752883 Functional Loss - DSTN ENSG00000125868 CDS Human protein_coding chr20:17587741 chr20:17587741 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_2511 0 0 1 0 1 DSTN chr20:17587682 3'AG 17587682 Downstream 60bp 2476 chr7 6630079 6630079 1 + G A BLCA 6630079 + 6630059 6630099 41 GAGGAGTTCGTGTTCCAGGTGCCCAAGGAGCGCAGCGCGCA GAGGAGTTCGTGTTCCAGGTACCCAAGGAGCGCAGCGCGCA Direct Loss 0.957028141244535 0 NA NA prediction 0.914056282489071 Functional Loss - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6630079 chr7:6630079 synonymous SNV . 0 21 hm7G_associated_SNPs_2512 0 0 1 0 1 C7orf26 chr7:6630106 5'GT 6630106 Upstream 28bp 2477 chr9 90387856 90387856 1 + G T UCEC 90387856 + 90387836 90387876 41 ATGATTGAGCAGCACAATCAGGAATACAGGGAAGGGAAACA ATGATTGAGCAGCACAATCATGAATACAGGGAAGGGAAACA Direct Loss 0.957015631640186 0 NA NA prediction 0.914031263280372 Functional Loss - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90387856 chr9:90387856 . . 0 21 hm7G_associated_SNPs_2513 0 0 0 0 1 CTSL3P chr9:90387913 5'GT 90387913 Upstream 58bp 2478 chr3 148563270 148563270 1 + G T BLCA 148563270 + 148563250 148563290 41 GTGGACCTGCCGCAGAGTCTGAAAAGGAGACCAAGGCCCTG GTGGACCTGCCGCAGAGTCTTAAAAGGAGACCAAGGCCCTG Direct Loss 0.9570086033902 0 NA NA prediction 0.9140172067804 Functional Loss - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148563270 chr3:148563270 stopgain 0.965 1 21 hm7G_associated_SNPs_2515 0 0 0 0 1 CPB1 chr3:148563211 3'AG 148563211 Downstream 60bp 2479 chr1 153604192 153604192 1 + G T SARC 153604192 + 153604172 153604212 41 AGGCCCAGAAGGATGTGGATGCTGTGGACAAGGTGATGAAG AGGCCCAGAAGGATGTGGATTCTGTGGACAAGGTGATGAAG Direct Loss 0.957007196960315 0 NA NA prediction 0.91401439392063 Functional Loss - S100A1 ENSG00000160678 CDS Human protein_coding chr1:153604192 chr1:153604192 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2516 0 0 1 0 1 S100A1 chr1:153604174 3'AG 153604174 Downstream 19bp 2480 chr1 154295835 154295835 1 + G C LUAD 154295835 + 154295815 154295855 41 AACAATGGCTTCCTGGATCAGGTAAGTGTGAGGGGGAGACC AACAATGGCTTCCTGGATCACGTAAGTGTGAGGGGGAGACC Direct Loss 0.95699533365107 0 NA NA prediction 0.91399066730214 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295835 chr1:154295835 nonsynonymous SNV 0.961 4 21 hm7G_associated_SNPs_2518 0 0 0 0 1 AQP10 chr1:154295835 5'GT 154295835 Upstream 1bp 2481 chr11 93170762 93170762 1 + G A SKCM 93170762 + 93170742 93170782 41 GCTGCACAGCATTTCCTTCTGGAAGAAGAGAAACGAGCAAA GCTGCACAGCATTTCCTTCTAGAAGAAGAGAAACGAGCAAA Direct Loss 0.956986359460337 0 NA NA prediction 0.913972718920674 Functional Loss - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93170762 chr11:93170762 synonymous SNV . 0 21 hm7G_associated_SNPs_2520 0 0 0 0 1 DEUP1 chr11:93170709 3'AG 93170709 Downstream 54bp 2482 chr1 19923518 19923518 1 + G A UCEC 19923518 + 19923498 19923538 41 GGGGGCCGGCCGAGAGGAAAGCTGGAGGCGCGGGTGGGGAA GGGGGCCGGCCGAGAGGAAAACTGGAGGCGCGGGTGGGGAA Direct Loss 0.956978288540483 0 NA NA prediction 0.913956577080965 Functional Loss - MINOS1;MINOS1-NBL1 ENSG00000173436;ENSG00000270136 UTR5 Human other chr1:19923518 chr1:19923518 . . 0 21 hm7G_associated_SNPs_2521 0 0 1 0 1 MINOS1 chr1:19923603 5'GT 19923603 Upstream 86bp 2483 chr11 62496335 62496335 1 + G A LUSC 62496335 + 62496315 62496355 41 ACAGTTATGGAGAAGCGTCTGCAGGAGGCTCAGCTGTACAA ACAGTTATGGAGAAGCGTCTACAGGAGGCTCAGCTGTACAA Direct Loss 0.956976392243438 0 NA NA prediction 0.913952784486876 Functional Loss - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62496335 chr11:62496335 synonymous SNV . 0 21 hm7G_associated_SNPs_2522 0 0 1 0 1 TTC9C chr11:62496295 3'AG 62496295 Downstream 41bp 2484 chr16 84797748 84797748 1 + G T UCEC 84797748 + 84797728 84797768 41 TCAATGAAGAAGAGCAGGAAGAACAAGGTGAAGGAAGCGAG TCAATGAAGAAGAGCAGGAATAACAAGGTGAAGGAAGCGAG Direct Loss 0.956960381849398 0 NA NA prediction 0.913920763698796 Functional Loss - USP10 ENSG00000103194 CDS Human protein_coding chr16:84797748 chr16:84797748 stopgain 0.327 0 21 hm7G_associated_SNPs_2523 0 0 1 0 1 USP10 chr16:84797692 3'AG 84797692 Downstream 57bp 2485 chr12 95877020 95877020 1 + G A OV 95877020 + 95877000 95877040 41 GCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAAAGAAG GCGATGGAGATGGAGCAACTAGAAAGAAGAAGAAAAAGAAG Direct Loss 0.95695547076639 0 NA NA prediction 0.91391094153278 Functional Loss - METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877020 chr12:95877020 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2524 0 0 1 1 2 METAP2 chr12:95876991 3'AG 95876991 Downstream 30bp 2486 chr12 95877020 95877020 1 + G A OV 95877020 + 95877000 95877040 41 GCGATGGAGATGGAGCAACTGGAAAGAAGAAGAAAAAGAAG GCGATGGAGATGGAGCAACTAGAAAGAAGAAGAAAAAGAAG Direct Loss 0.95695547076639 0 NA NA prediction 0.91391094153278 Functional Loss - METAP2 ENSG00000111142 CDS Human protein_coding chr12:95877020 chr12:95877020 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2524 0 0 1 1 2 METAP2 chr12:95877056 5'GT 95877056 Upstream 37bp 2487 chr5 76249428 76249428 1 + G A READ 76249428 + 76249408 76249448 41 ACCTATGTTTCTTGCCAGCTGAGGGAAGCGGCGGACTACGA ACCTATGTTTCTTGCCAGCTAAGGGAAGCGGCGGACTACGA Direct Loss 0.956930077305694 0 NA NA prediction 0.913860154611388 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249428 chr5:76249428 synonymous SNV . 0 21 hm7G_associated_SNPs_2526 0 0 0 0 2 CRHBP chr5:76249426 3'AG 76249426 Downstream 3bp 2488 chr5 76249428 76249428 1 + G A READ 76249428 + 76249408 76249448 41 ACCTATGTTTCTTGCCAGCTGAGGGAAGCGGCGGACTACGA ACCTATGTTTCTTGCCAGCTAAGGGAAGCGGCGGACTACGA Direct Loss 0.956930077305694 0 NA NA prediction 0.913860154611388 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249428 chr5:76249428 synonymous SNV . 0 21 hm7G_associated_SNPs_2526 0 0 0 0 2 CRHBP chr5:76249519 5'GT 76249519 Upstream 92bp 2489 chr3 140419756 140419756 1 + G T ESCA 140419756 + 140419736 140419776 41 ACACCAGATGGACATGGGAAGAACCGAGCTAAGTGGGGCCT ACACCAGATGGACATGGGAATAACCGAGCTAAGTGGGGCCT Direct Loss 0.956926552433812 0 NA NA prediction 0.913853104867624 Functional Loss - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140419756 chr3:140419756 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2528 0 0 0 0 1 TRIM42 chr3:140419730 3'AG 140419730 Downstream 27bp 2490 chr16 53488647 53488647 1 + G T SARC 53488647 + 53488627 53488667 41 GGATATTTCTTGGAGAGGATGCTGAGGAGGAAATTGGGACT GGATATTTCTTGGAGAGGATTCTGAGGAGGAAATTGGGACT Direct Loss 0.956888227033447 0 NA NA prediction 0.913776454066893 Functional Loss - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53488647 chr16:53488647 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_2531 0 0 1 0 1 RBL2 chr16:53488568 3'AG 53488568 Downstream 80bp 2491 chr4 130023943 130023943 1 + G A HNSC 130023943 + 130023923 130023963 41 TCAATGAACTGTGGGATTATGAAGGTAAGTGGAAGTACTGT TCAATGAACTGTGGGATTATAAAGGTAAGTGGAAGTACTGT Direct Loss 0.956874849344932 0 NA NA prediction 0.913749698689864 Functional Loss - C4orf33 ENSG00000151470 CDS Human protein_coding chr4:130023943 chr4:130023943 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2532 0 0 1 0 1 C4orf33 chr4:130023946 5'GT 130023946 Upstream 4bp 2492 chr16 31141434 31141434 1 + G C CESC 31141434 + 31141414 31141454 41 TCGTCTTTTACATCCTGACTGAGGTGGACCGGCAGGGGGCC TCGTCTTTTACATCCTGACTCAGGTGGACCGGCAGGGGGCC Direct Loss 0.956833827554711 0 NA NA prediction 0.913667655109423 Functional Loss - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31141434 chr16:31141434 nonsynonymous SNV 0.984 4 21 hm7G_associated_SNPs_2534 0 0 1 0 2 KAT8 chr16:31141338 3'AG 31141338 Downstream 97bp 2493 chr16 31141434 31141434 1 + G C CESC 31141434 + 31141414 31141454 41 TCGTCTTTTACATCCTGACTGAGGTGGACCGGCAGGGGGCC TCGTCTTTTACATCCTGACTCAGGTGGACCGGCAGGGGGCC Direct Loss 0.956833827554711 0 NA NA prediction 0.913667655109423 Functional Loss - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31141434 chr16:31141434 nonsynonymous SNV 0.984 4 21 hm7G_associated_SNPs_2534 0 0 1 0 2 KAT8 chr16:31141478 5'GT 31141478 Upstream 45bp 2494 chr16 56693060 56693060 1 + G A GBM 56693060 + 56693040 56693080 41 CAAAGGGGCGTCAGAGAAGTGCAGCTGCTGCGACTGATGCC CAAAGGGGCGTCAGAGAAGTACAGCTGCTGCGACTGATGCC Direct Loss 0.956833781855438 0 NA NA prediction 0.913667563710875 Functional Loss - MT1F ENSG00000198417 CDS Human protein_coding chr16:56693060 chr16:56693060 nonsynonymous SNV 0.039 3 21 hm7G_associated_SNPs_2535 0 0 1 0 1 MT1F chr16:56692985 3'AG 56692985 Downstream 76bp 2495 chr19 4442280 4442280 1 + G A rs140147311 4442280 + 4442260 4442300 41 GACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGAGGA GACGGCTTCCAGGCAGACACAGAGGAGGAGGAAGAGGAGGA Direct Loss 0.956831238951416 0 NA NA prediction 0.913662477902832 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442280 chr19:4442280 synonymous SNV . 0 21 hm7G_associated_SNPs_2536 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 39bp 2496 chr19 4442280 4442280 1 + G A rs140147311 4442280 + 4442260 4442300 41 GACGGCTTCCAGGCAGACACGGAGGAGGAGGAAGAGGAGGA GACGGCTTCCAGGCAGACACAGAGGAGGAGGAAGAGGAGGA Direct Loss 0.956831238951416 0 NA NA prediction 0.913662477902832 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442280 chr19:4442280 synonymous SNV . 0 21 hm7G_associated_SNPs_2536 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 59bp 2497 chr12 54741787 54741787 1 + G A THCA 54741787 + 54741767 54741807 41 CTTCTTTGTTTTTGCAGGGTGATCCTAGAGAGTGATCCCCA CTTCTTTGTTTTTGCAGGGTAATCCTAGAGAGTGATCCCCA Direct Loss 0.956818501182941 0 NA NA prediction 0.913637002365881 Functional Loss - COPZ1 ENSG00000111481 CDS Human protein_coding chr12:54741787 chr12:54741787 synonymous SNV . 0 21 hm7G_associated_SNPs_2537 0 0 1 0 1 COPZ1 chr12:54741823 5'GT 54741823 Upstream 37bp 2498 chr3 44906570 44906570 1 + G A UCEC 44906570 + 44906550 44906590 41 CTGTATGGAGAGTGCCAGGAGGTCTTGTGGTGGGGAGGAGT CTGTATGGAGAGTGCCAGGAAGTCTTGTGGTGGGGAGGAGT Direct Loss 0.956807083624286 0 NA NA prediction 0.913614167248572 Functional Loss - TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44906570 chr3:44906570 synonymous SNV . 0 21 hm7G_associated_SNPs_2539 0 0 1 0 1 TMEM42 chr3:44906532 3'AG 44906532 Downstream 39bp 2499 chr4 1746259 1746259 1 + G A BLCA 1746259 + 1746239 1746279 41 TCCTAGAACGAAGAGTCACTGAAGAAGTGCGTGGAGGATTA TCCTAGAACGAAGAGTCACTAAAGAAGTGCGTGGAGGATTA Direct Loss 0.956781334348286 0 NA NA prediction 0.913562668696572 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1746259 chr4:1746259 synonymous SNV . 0 21 hm7G_associated_SNPs_2540 0 0 1 0 2 TACC3 chr4:1746245 3'AG 1746245 Downstream 15bp 2500 chr4 1746259 1746259 1 + G A BLCA 1746259 + 1746239 1746279 41 TCCTAGAACGAAGAGTCACTGAAGAAGTGCGTGGAGGATTA TCCTAGAACGAAGAGTCACTAAAGAAGTGCGTGGAGGATTA Direct Loss 0.956781334348286 0 NA NA prediction 0.913562668696572 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1746259 chr4:1746259 synonymous SNV . 0 21 hm7G_associated_SNPs_2540 0 0 1 0 2 TACC3 chr4:1746351 5'GT 1746351 Upstream 93bp 2501 chr7 33014277 33014277 1 + G A LUAD 33014277 + 33014257 33014297 41 TTTGTGGGAAAAGGACAGCTGATCACAGGGATGGACCAGGC TTTGTGGGAAAAGGACAGCTAATCACAGGGATGGACCAGGC Direct Loss 0.956779562848879 0 NA NA prediction 0.913559125697757 Functional Loss - FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014277 chr7:33014277 synonymous SNV . 0 21 hm7G_associated_SNPs_2541 0 0 1 0 2 FKBP9 chr7:33014229 3'AG 33014229 Downstream 49bp 2502 chr7 33014277 33014277 1 + G A LUAD 33014277 + 33014257 33014297 41 TTTGTGGGAAAAGGACAGCTGATCACAGGGATGGACCAGGC TTTGTGGGAAAAGGACAGCTAATCACAGGGATGGACCAGGC Direct Loss 0.956779562848879 0 NA NA prediction 0.913559125697757 Functional Loss - FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014277 chr7:33014277 synonymous SNV . 0 21 hm7G_associated_SNPs_2541 0 0 1 0 2 FKBP9 chr7:33014374 5'GT 33014374 Upstream 98bp 2503 chr2 27907975 27907975 1 + G A rs147641311 27907975 + 27907955 27907995 41 GATGAGCCTGAAGTAGAAGAGGAGGAGGAAGAGGAAGAGGA GATGAGCCTGAAGTAGAAGAAGAGGAGGAAGAGGAAGAGGA Direct Loss 0.956769469851649 0 NA NA prediction 0.913538939703298 Functional Loss - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27907975 chr2:27907975 synonymous SNV . 0 21 hm7G_associated_SNPs_2543 0 0 0 0 1 SLC4A1AP chr2:27907904 3'AG 27907904 Downstream 72bp 2504 chr11 1862066 1862066 1 + G A HNSC 1862066 + 1862046 1862086 41 TAGGAGCTCTGCAAACAGCTGCACGCCAAGATCGATGCGGC TAGGAGCTCTGCAAACAGCTACACGCCAAGATCGATGCGGC Direct Loss 0.956756532924491 0 NA NA prediction 0.913513065848981 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862066 chr11:1862066 synonymous SNV . 0 21 hm7G_associated_SNPs_2544 0 0 0 0 2 TNNI2 chr11:1862049 3'AG 1862049 Downstream 18bp 2505 chr11 1862066 1862066 1 + G A HNSC 1862066 + 1862046 1862086 41 TAGGAGCTCTGCAAACAGCTGCACGCCAAGATCGATGCGGC TAGGAGCTCTGCAAACAGCTACACGCCAAGATCGATGCGGC Direct Loss 0.956756532924491 0 NA NA prediction 0.913513065848981 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862066 chr11:1862066 synonymous SNV . 0 21 hm7G_associated_SNPs_2544 0 0 0 0 2 TNNI2 chr11:1862138 5'GT 1862138 Upstream 73bp 2506 chr2 70043261 70043261 1 + G T LUSC 70043261 + 70043241 70043281 41 TGAGGCTGGAGAGAAGAAATGGGGGACAGATGAGGTGAAAT TGAGGCTGGAGAGAAGAAATTGGGGACAGATGAGGTGAAAT Direct Loss 0.956752462511796 0 NA NA prediction 0.913504925023593 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70043261 chr2:70043261 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2545 0 0 1 0 2 ANXA4 chr2:70043233 3'AG 70043233 Downstream 29bp 2507 chr2 70043261 70043261 1 + G T LUSC 70043261 + 70043241 70043281 41 TGAGGCTGGAGAGAAGAAATGGGGGACAGATGAGGTGAAAT TGAGGCTGGAGAGAAGAAATTGGGGACAGATGAGGTGAAAT Direct Loss 0.956752462511796 0 NA NA prediction 0.913504925023593 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70043261 chr2:70043261 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2545 0 0 1 0 2 ANXA4 chr2:70043326 5'GT 70043326 Upstream 66bp 2508 chr6 24533787 24533787 1 + G A HNSC 24533787 + 24533767 24533807 41 TGGAGAGTGGCAGAGCAGCTGGAAGTGGGCATGGTTGGCGT TGGAGAGTGGCAGAGCAGCTAGAAGTGGGCATGGTTGGCGT Direct Loss 0.956741135852963 0 NA NA prediction 0.913482271705927 Functional Loss - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24533787 chr6:24533787 synonymous SNV . 0 21 hm7G_associated_SNPs_2546 0 0 1 0 1 ALDH5A1 chr6:24533735 3'AG 24533735 Downstream 53bp 2509 chr18 72186206 72186206 1 + G C BLCA 72186206 + 72186186 72186226 41 TTTGGTGTTGAGCCAGACTTGACCAGGGAAGGCGGCAGTAT TTTGGTGTTGAGCCAGACTTCACCAGGGAAGGCGGCAGTAT Direct Loss 0.956736888062322 0 NA NA prediction 0.913473776124645 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72186206 chr18:72186206 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2547 0 0 1 0 1 CNDP2 chr18:72186184 3'AG 72186184 Downstream 23bp 2510 chr4 78830473 78830473 1 + G C ESCA 78830473 + 78830453 78830493 41 AATTATTTAAAAATGGACATGAAATTAAGGTAGATGAAGAA AATTATTTAAAAATGGACATCAAATTAAGGTAGATGAAGAA Direct Loss 0.956719931850145 0 NA NA prediction 0.91343986370029 Functional Loss - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78830473 chr4:78830473 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_2548 0 0 0 0 2 MRPL1 chr4:78830420 3'AG 78830420 Downstream 54bp 2511 chr4 78830473 78830473 1 + G C ESCA 78830473 + 78830453 78830493 41 AATTATTTAAAAATGGACATGAAATTAAGGTAGATGAAGAA AATTATTTAAAAATGGACATCAAATTAAGGTAGATGAAGAA Direct Loss 0.956719931850145 0 NA NA prediction 0.91343986370029 Functional Loss - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78830473 chr4:78830473 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_2548 0 0 0 0 2 MRPL1 chr4:78830526 5'GT 78830526 Upstream 54bp 2512 chr6 55216093 55216093 1 + G T LUAD 55216093 + 55216073 55216113 41 TTTGGAAGTGGCAGAGGCATGTGTAGGGGATGTGGTCTGTA TTTGGAAGTGGCAGAGGCATTTGTAGGGGATGTGGTCTGTA Direct Loss 0.956711944120422 0 NA NA prediction 0.913423888240845 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55216093 chr6:55216093 nonsynonymous SNV 0.995 5 21 hm7G_associated_SNPs_2549 0 0 0 0 1 GFRAL chr6:55216051 3'AG 55216051 Downstream 43bp 2513 chr20 5897558 5897558 1 + G A HNSC 5897558 + 5897538 5897578 41 CCTGAGTGCCGCCAAGTCCTGAAGACGAGTAAGTGTCCCAC CCTGAGTGCCGCCAAGTCCTAAAGACGAGTAAGTGTCCCAC Direct Loss 0.956705794509222 0 NA NA prediction 0.913411589018444 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897558 chr20:5897558 synonymous SNV . 0 21 hm7G_associated_SNPs_2550 0 0 0 0 2 CHGB chr20:5897472 3'AG 5897472 Downstream 87bp 2514 chr20 5897558 5897558 1 + G A HNSC 5897558 + 5897538 5897578 41 CCTGAGTGCCGCCAAGTCCTGAAGACGAGTAAGTGTCCCAC CCTGAGTGCCGCCAAGTCCTAAAGACGAGTAAGTGTCCCAC Direct Loss 0.956705794509222 0 NA NA prediction 0.913411589018444 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897558 chr20:5897558 synonymous SNV . 0 21 hm7G_associated_SNPs_2550 0 0 0 0 2 CHGB chr20:5897565 5'GT 5897565 Upstream 8bp 2515 chr13 73312139 73312139 1 + G T OV 73312139 + 73312119 73312159 41 TCGTACCCTCTCCTTGGACTGATCATGAAGGGAAACAGCTT TCGTACCCTCTCCTTGGACTTATCATGAAGGGAAACAGCTT Direct Loss 0.956684941656583 0 NA NA prediction 0.913369883313166 Functional Loss - BORA ENSG00000136122 CDS Human protein_coding chr13:73312139 chr13:73312139 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2551 0 0 1 0 2 BORA chr13:73312100 3'AG 73312100 Downstream 40bp 2516 chr13 73312139 73312139 1 + G T OV 73312139 + 73312119 73312159 41 TCGTACCCTCTCCTTGGACTGATCATGAAGGGAAACAGCTT TCGTACCCTCTCCTTGGACTTATCATGAAGGGAAACAGCTT Direct Loss 0.956684941656583 0 NA NA prediction 0.913369883313166 Functional Loss - BORA ENSG00000136122 CDS Human protein_coding chr13:73312139 chr13:73312139 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2551 0 0 1 0 2 BORA chr13:73312181 5'GT 73312181 Upstream 43bp 2517 chr5 89802378 89802378 1 + G A CESC 89802378 + 89802358 89802398 41 GAGGTGATGGTGAAAAATCAGATGAGGAAAATGAAGAGAAA GAGGTGATGGTGAAAAATCAAATGAGGAAAATGAAGAGAAA Direct Loss 0.956670814597959 0 NA NA prediction 0.913341629195918 Functional Loss - POLR3G ENSG00000113356 CDS Human protein_coding chr5:89802378 chr5:89802378 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2553 0 0 0 0 1 POLR3G chr5:89802345 3'AG 89802345 Downstream 34bp 2518 chrX 49028382 49028382 1 + G A UCEC 49028382 + 49028362 49028402 41 GCGCCTCTCGGCTCCTGGCTGCTGGGCCGCCTGCACCAACT GCGCCTCTCGGCTCCTGGCTACTGGGCCGCCTGCACCAACT Direct Loss 0.956639235617152 0 NA NA prediction 0.913278471234305 Functional Loss - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49028382 chrX:49028382 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_2559 0 0 1 0 1 PLP2 chrX:49028443 5'GT 49028443 Upstream 62bp 2519 chr1 43162857 43162857 1 + G C OV 43162857 + 43162837 43162877 41 ATTGTCTTTTTCAGGGTGCTGACAACCAGGGTGCAGGAGAA ATTGTCTTTTTCAGGGTGCTCACAACCAGGGTGCAGGAGAA Direct Loss 0.956633259289054 0 NA NA prediction 0.913266518578107 Functional Loss - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43162857 chr1:43162857 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2560 0 0 1 0 1 YBX1 chr1:43162933 5'GT 43162933 Upstream 77bp 2520 chr6 43484868 43484868 1 + G A SKCM 43484868 + 43484848 43484888 41 ATGGCGGCTTCTCAGGCGGTGGAGGAAATGCGGAGCCGCGT ATGGCGGCTTCTCAGGCGGTAGAGGAAATGCGGAGCCGCGT Direct Loss 0.956633043589273 0 NA NA prediction 0.913266087178546 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43484868 chr6:43484868 synonymous SNV . 0 21 hm7G_associated_SNPs_2561 0 0 1 0 1 POLR1C chr6:43484916 5'GT 43484916 Upstream 49bp 2521 chr3 183777831 183777831 1 + G T LUAD 183777831 + 183777811 183777851 41 TCACCCTCACCCACCTGCCTGGTGAGGGAAGCCAGCACTGT TCACCCTCACCCACCTGCCTTGTGAGGGAAGCCAGCACTGT Direct Loss 0.956611276283824 0 NA NA prediction 0.913222552567648 Functional Loss - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183777831 chr3:183777831 nonsynonymous SNV 0.532 3 21 hm7G_associated_SNPs_2562 0 0 0 0 1 HTR3C chr3:183777831 5'GT 183777831 Upstream 1bp 2522 chr19 11558346 11558346 1 + G A rs543211095 11558346 + 11558326 11558366 41 CCCTCGTCGCCCACAGAGGAGGAGGAGGAGGAGGAGGAGGA CCCTCGTCGCCCACAGAGGAAGAGGAGGAGGAGGAGGAGGA Direct Loss 0.956577898883695 0 NA NA prediction 0.91315579776739 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558346 chr19:11558346 synonymous SNV . 0 21 hm7G_associated_SNPs_2565 0 0 1 0 2 PRKCSH chr19:11558254 3'AG 11558254 Downstream 93bp 2523 chr19 11558346 11558346 1 + G A rs543211095 11558346 + 11558326 11558366 41 CCCTCGTCGCCCACAGAGGAGGAGGAGGAGGAGGAGGAGGA CCCTCGTCGCCCACAGAGGAAGAGGAGGAGGAGGAGGAGGA Direct Loss 0.956577898883695 0 NA NA prediction 0.91315579776739 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558346 chr19:11558346 synonymous SNV . 0 21 hm7G_associated_SNPs_2565 0 0 1 0 2 PRKCSH chr19:11558433 5'GT 11558433 Upstream 88bp 2524 chr14 95056583 95056583 1 + G A rs141064706 95056583 + 95056563 95056603 41 CTCCCCAGTGAGGGAAAGATGCAGCAGGTGGAGAATGGACT CTCCCCAGTGAGGGAAAGATACAGCAGGTGGAGAATGGACT Direct Loss 0.956562621887378 0 NA NA prediction 0.913125243774757 Functional Loss - SERPINA5 ENSG00000188488 CDS Human protein_coding chr14:95056583 chr14:95056583 nonsynonymous SNV 0.210 4 21 hm7G_associated_SNPs_2568 0 0 1 0 1 SERPINA5 chr14:95056648 5'GT 95056648 Upstream 66bp 2525 chr14 36337144 36337144 1 + G A UCEC 36337144 + 36337124 36337164 41 TGGAAAAACATCTGCACAGTGCTAGATCTGAAGAGGGAAGA TGGAAAAACATCTGCACAGTACTAGATCTGAAGAGGGAAGA Direct Loss 0.956558446779827 0 NA NA prediction 0.913116893559655 Functional Loss - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36337144 chr14:36337144 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2569 0 0 1 0 2 BRMS1L chr14:36337112 3'AG 36337112 Downstream 33bp 2526 chr14 36337144 36337144 1 + G A UCEC 36337144 + 36337124 36337164 41 TGGAAAAACATCTGCACAGTGCTAGATCTGAAGAGGGAAGA TGGAAAAACATCTGCACAGTACTAGATCTGAAGAGGGAAGA Direct Loss 0.956558446779827 0 NA NA prediction 0.913116893559655 Functional Loss - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36337144 chr14:36337144 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2569 0 0 1 0 2 BRMS1L chr14:36337238 5'GT 36337238 Upstream 95bp 2527 chr3 52281706 52281706 1 + G A UCEC 52281706 + 52281686 52281726 41 GGTTTTCCCCAGGATGAGGTGATCGGGCGGGAGCTGGAGGC GGTTTTCCCCAGGATGAGGTAATCGGGCGGGAGCTGGAGGC Direct Loss 0.956540844317555 0 NA NA prediction 0.913081688635111 Functional Loss - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281706 chr3:52281706 synonymous SNV . 0 21 hm7G_associated_SNPs_2571 0 0 0 0 1 PPM1M chr3:52281698 3'AG 52281698 Downstream 9bp 2528 chr9 35809214 35809214 1 + G T THCA 35809214 + 35809194 35809234 41 GATGAGCTAGGATGCTTCCAGCTAGAGCTTCGGGGGGATGT GATGAGCTAGGATGCTTCCATCTAGAGCTTCGGGGGGATGT Direct Loss 0.956522972377282 0 NA NA prediction 0.913045944754564 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35809214 chr9:35809214 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2572 1 0 0 0 2 NPR2 chr9:35809153 3'AG 35809153 Downstream 62bp 2529 chr9 35809214 35809214 1 + G T THCA 35809214 + 35809194 35809234 41 GATGAGCTAGGATGCTTCCAGCTAGAGCTTCGGGGGGATGT GATGAGCTAGGATGCTTCCATCTAGAGCTTCGGGGGGATGT Direct Loss 0.956522972377282 0 NA NA prediction 0.913045944754564 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35809214 chr9:35809214 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2572 1 0 0 0 2 NPR2 chr9:35809244 5'GT 35809244 Upstream 31bp 2530 chr11 67352655 67352655 1 + G T SARC 67352655 + 67352635 67352675 41 GCAGCCCTGGTGGACATGGTGAATGACGGCGTGGAGGACCT GCAGCCCTGGTGGACATGGTTAATGACGGCGTGGAGGACCT Direct Loss 0.956517126020554 0 NA NA prediction 0.913034252041108 Functional Loss - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352655 chr11:67352655 synonymous SNV . 0 21 hm7G_associated_SNPs_2573 0 0 1 0 2 GSTP1 chr11:67352609 3'AG 67352609 Downstream 47bp 2531 chr11 67352655 67352655 1 + G T SARC 67352655 + 67352635 67352675 41 GCAGCCCTGGTGGACATGGTGAATGACGGCGTGGAGGACCT GCAGCCCTGGTGGACATGGTTAATGACGGCGTGGAGGACCT Direct Loss 0.956517126020554 0 NA NA prediction 0.913034252041108 Functional Loss - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67352655 chr11:67352655 synonymous SNV . 0 21 hm7G_associated_SNPs_2573 0 0 1 0 2 GSTP1 chr11:67352712 5'GT 67352712 Upstream 58bp 2532 chr1 171755056 171755056 1 + G A SKCM 171755056 + 171755036 171755076 41 ACCGAGTGGCTCTTTGGCATGGATGAGGGCCGGAAACAGCT ACCGAGTGGCTCTTTGGCATAGATGAGGGCCGGAAACAGCT Direct Loss 0.956485893397418 0 NA NA prediction 0.912971786794836 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755056 chr1:171755056 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2575 0 0 1 0 2 METTL13 chr1:171755019 3'AG 171755019 Downstream 38bp 2533 chr1 171755056 171755056 1 + G A SKCM 171755056 + 171755036 171755076 41 ACCGAGTGGCTCTTTGGCATGGATGAGGGCCGGAAACAGCT ACCGAGTGGCTCTTTGGCATAGATGAGGGCCGGAAACAGCT Direct Loss 0.956485893397418 0 NA NA prediction 0.912971786794836 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755056 chr1:171755056 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2575 0 0 1 0 2 METTL13 chr1:171755027 3'AG 171755027 Downstream 30bp 2534 chr1 84948646 84948646 1 + G A HNSC 84948646 + 84948626 84948666 41 TTGACAACCAGCGAGTGTATGATGAAACCACAGTAGACCCT TTGACAACCAGCGAGTGTATAATGAAACCACAGTAGACCCT Direct Loss 0.95648574306903 0 NA NA prediction 0.91297148613806 Functional Loss - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84948646 chr1:84948646 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_2576 0 0 1 0 2 RPF1 chr1:84948598 3'AG 84948598 Downstream 49bp 2535 chr1 84948646 84948646 1 + G A HNSC 84948646 + 84948626 84948666 41 TTGACAACCAGCGAGTGTATGATGAAACCACAGTAGACCCT TTGACAACCAGCGAGTGTATAATGAAACCACAGTAGACCCT Direct Loss 0.95648574306903 0 NA NA prediction 0.91297148613806 Functional Loss - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84948646 chr1:84948646 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_2576 0 0 1 0 2 RPF1 chr1:84948678 5'GT 84948678 Upstream 33bp 2536 chr13 29242705 29242705 1 + G T LGG 29242705 + 29242685 29242725 41 CAGATGGAATTCAAGGCAGTGCAGCAGGTGAGTTGATGGAT CAGATGGAATTCAAGGCAGTTCAGCAGGTGAGTTGATGGAT Direct Loss 0.956435741343332 0 NA NA prediction 0.912871482686665 Functional Loss - POMP ENSG00000132963 CDS Human protein_coding chr13:29242705 chr13:29242705 synonymous SNV . 0 21 hm7G_associated_SNPs_2579 0 0 1 0 2 POMP chr13:29242610 3'AG 29242610 Downstream 96bp 2537 chr13 29242705 29242705 1 + G T LGG 29242705 + 29242685 29242725 41 CAGATGGAATTCAAGGCAGTGCAGCAGGTGAGTTGATGGAT CAGATGGAATTCAAGGCAGTTCAGCAGGTGAGTTGATGGAT Direct Loss 0.956435741343332 0 NA NA prediction 0.912871482686665 Functional Loss - POMP ENSG00000132963 CDS Human protein_coding chr13:29242705 chr13:29242705 synonymous SNV . 0 21 hm7G_associated_SNPs_2579 0 0 1 0 2 POMP chr13:29242711 5'GT 29242711 Upstream 7bp 2538 chr22 35782729 35782729 1 + G C CESC 35782729 + 35782709 35782749 41 TGGCCCTGGAGGAGGAGATTGAGCGCAACAAGGAGAGCCCA TGGCCCTGGAGGAGGAGATTCAGCGCAACAAGGAGAGCCCA Direct Loss 0.956431356215132 0 NA NA prediction 0.912862712430265 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35782729 chr22:35782729 nonsynonymous SNV 0.955 3 21 hm7G_associated_SNPs_2580 0 0 1 0 1 HMOX1 chr22:35782678 3'AG 35782678 Downstream 52bp 2539 chr2 96076621 96076621 1 + G A UCEC 96076621 + 96076601 96076641 41 TGCCCCCATAGGCCACAGATGCTATGGCCCACGTGGCCGGC TGCCCCCATAGGCCACAGATACTATGGCCCACGTGGCCGGC Direct Loss 0.956430153663827 0 NA NA prediction 0.912860307327653 Functional Loss - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96076621 chr2:96076621 nonsynonymous SNV 0.958 5 21 hm7G_associated_SNPs_2581 0 0 0 0 1 FAHD2A chr2:96076612 3'AG 96076612 Downstream 10bp 2540 chr6 3129313 3129313 1 + G A UCEC 3129313 + 3129293 3129333 41 GAAGGTTTCTCTGCTGGGGTGGAGTGATGGGGGCATAACCG GAAGGTTTCTCTGCTGGGGTAGAGTGATGGGGGCATAACCG Direct Loss 0.956421078617125 0 NA NA prediction 0.91284215723425 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3129313 chr6:3129313 stopgain 0.999 1 21 hm7G_associated_SNPs_2582 0 0 1 0 1 BPHL chr6:3129279 3'AG 3129279 Downstream 35bp 2541 chr22 20094161 20094161 1 + G T LUAD 20094161 + 20094141 20094181 41 TCAAGTTTGAAGTGGTTCCTGGGAAAAACCAGAAGAGTGAA TCAAGTTTGAAGTGGTTCCTTGGAAAAACCAGAAGAGTGAA Direct Loss 0.956420070900024 0 NA NA prediction 0.912840141800048 Functional Loss - DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20094161 chr22:20094161 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2583 0 0 1 0 2 DGCR8 chr22:20094115 3'AG 20094115 Downstream 47bp 2542 chr22 20094161 20094161 1 + G T LUAD 20094161 + 20094141 20094181 41 TCAAGTTTGAAGTGGTTCCTGGGAAAAACCAGAAGAGTGAA TCAAGTTTGAAGTGGTTCCTTGGAAAAACCAGAAGAGTGAA Direct Loss 0.956420070900024 0 NA NA prediction 0.912840141800048 Functional Loss - DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20094161 chr22:20094161 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2583 0 0 1 0 2 DGCR8 chr22:20094221 5'GT 20094221 Upstream 61bp 2543 chr12 57969470 57969470 1 + G T UCEC 57969470 + 57969450 57969490 41 GAATACATGCAGAGCGTGGAGCTAAAGAAGCGGCACCTGGA GAATACATGCAGAGCGTGGATCTAAAGAAGCGGCACCTGGA Direct Loss 0.956398994334097 0 NA NA prediction 0.912797988668194 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57969470 chr12:57969470 nonsynonymous SNV 0.943 2 21 hm7G_associated_SNPs_2584 0 0 0 0 1 KIF5A chr12:57969423 3'AG 57969423 Downstream 48bp 2544 chr14 74522323 74522323 1 + G T UCEC 74522323 + 74522303 74522343 41 AATGTGGATATTGGAGATTTGACCTGGGAGCAGAAGGAAAA AATGTGGATATTGGAGATTTTACCTGGGAGCAGAAGGAAAA Direct Loss 0.956396430323443 0 NA NA prediction 0.912792860646887 Functional Loss - BBOF1 ENSG00000119636 CDS Human protein_coding chr14:74522323 chr14:74522323 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2585 0 0 0 0 2 BBOF1 chr14:74522287 3'AG 74522287 Downstream 37bp 2545 chr14 74522323 74522323 1 + G T UCEC 74522323 + 74522303 74522343 41 AATGTGGATATTGGAGATTTGACCTGGGAGCAGAAGGAAAA AATGTGGATATTGGAGATTTTACCTGGGAGCAGAAGGAAAA Direct Loss 0.956396430323443 0 NA NA prediction 0.912792860646887 Functional Loss - BBOF1 ENSG00000119636 CDS Human protein_coding chr14:74522323 chr14:74522323 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2585 0 0 0 0 2 BBOF1 chr14:74522388 5'GT 74522388 Upstream 66bp 2546 chr17 18285931 18285931 1 + G T SARC 18285931 + 18285911 18285951 41 ATCAACGACCAAGGAGAGCAGCTGCGGAGCCTGGTGGGGCC ATCAACGACCAAGGAGAGCATCTGCGGAGCCTGGTGGGGCC Direct Loss 0.956396118832606 0 NA NA prediction 0.912792237665212 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18285931 chr17:18285931 nonsynonymous SNV 0.599 3 21 hm7G_associated_SNPs_2586 0 0 0 0 1 EVPLL chr17:18285952 5'GT 18285952 Upstream 22bp 2547 chr1 104160219 104160219 1 + G C PAAD 104160219 + 104160199 104160239 41 ATTTAGCTCCGAAGGGATTTGGAGGGGTTCAGGTGGGTATG ATTTAGCTCCGAAGGGATTTCGAGGGGTTCAGGTGGGTATG Direct Loss 0.95639072914042 0 NA NA prediction 0.912781458280839 Functional Loss - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104160219 chr1:104160219 nonsynonymous SNV 0.681 5 21 hm7G_associated_SNPs_2587 0 0 0 0 1 AMY2A chr1:104160230 5'GT 104160230 Upstream 12bp 2548 chr19 33638570 33638570 1 + G T OV 33638570 + 33638550 33638590 41 GAGTCATTGCCGCATCCTATGATAAGACAGTGAGGGCCTGG GAGTCATTGCCGCATCCTATTATAAGACAGTGAGGGCCTGG Direct Loss 0.956374643207855 0 NA NA prediction 0.91274928641571 Functional Loss - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33638570 chr19:33638570 stoploss 0.019 4 21 hm7G_associated_SNPs_2590 0 0 0 0 1 WDR88 chr19:33638614 5'GT 33638614 Upstream 45bp 2549 chr12 85694954 85694954 1 + G T UCEC 85694954 + 85694934 85694974 41 TTCAGAACAATTTGTGGGCAGGAAATGCAAGTGGTGGTTCT TTCAGAACAATTTGTGGGCATGAAATGCAAGTGGTGGTTCT Direct Loss 0.956373618246646 0 NA NA prediction 0.912747236493293 Functional Loss - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85694954 chr12:85694954 stopgain 1.000 1 21 hm7G_associated_SNPs_2591 0 0 1 0 1 ALX1 chr12:85694933 3'AG 85694933 Downstream 22bp 2550 chr20 36361311 36361311 1 + G T UCEC 36361311 + 36361291 36361331 41 GCACAAAACGTCCCCGGGATGATGAAGAGGAGGAGCAGAAG GCACAAAACGTCCCCGGGATTATGAAGAGGAGGAGCAGAAG Direct Loss 0.9563152629562 0 NA NA prediction 0.9126305259124 Functional Loss - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36361311 chr20:36361311 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2595 0 0 1 0 1 CTNNBL1 chr20:36361281 3'AG 36361281 Downstream 31bp 2551 chr14 74387808 74387808 1 + G A UCEC 74387808 + 74387788 74387828 41 GTCAAGAGCAGGAGCAAACTGGTGAGGAGGGTGGGCATAGT GTCAAGAGCAGGAGCAAACTAGTGAGGAGGGTGGGCATAGT Direct Loss 0.956312047918199 0 NA NA prediction 0.912624095836398 Functional Loss - ZNF410 ENSG00000119725 CDS Human protein_coding chr14:74387808 chr14:74387808 nonsynonymous SNV 0.958 1 21 hm7G_associated_SNPs_2596 0 0 0 6 2 ZNF410 chr14:74387799 3'AG 74387799 Downstream 10bp 2552 chr14 74387808 74387808 1 + G A UCEC 74387808 + 74387788 74387828 41 GTCAAGAGCAGGAGCAAACTGGTGAGGAGGGTGGGCATAGT GTCAAGAGCAGGAGCAAACTAGTGAGGAGGGTGGGCATAGT Direct Loss 0.956312047918199 0 NA NA prediction 0.912624095836398 Functional Loss - ZNF410 ENSG00000119725 CDS Human protein_coding chr14:74387808 chr14:74387808 nonsynonymous SNV 0.958 1 21 hm7G_associated_SNPs_2596 0 0 0 6 2 ZNF410 chr14:74387808 5'GT 74387808 Upstream 1bp 2553 chr3 53222763 53222763 1 + G A SKCM 53222763 + 53222743 53222783 41 AAACTGGACAATGTGCTGCTGGACCGGGATGGCCACATCAA AAACTGGACAATGTGCTGCTAGACCGGGATGGCCACATCAA Direct Loss 0.956307826239451 0 NA NA prediction 0.912615652478902 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53222763 chr3:53222763 synonymous SNV . 0 21 hm7G_associated_SNPs_2597 0 0 0 0 1 PRKCD chr3:53222736 3'AG 53222736 Downstream 28bp 2554 chr12 57994170 57994170 1 + G A UCEC 57994170 + 57994150 57994190 41 AGAACCAGAAAGTATATATTGGTGAAGAGGAGAAGAAAATA AGAACCAGAAAGTATATATTAGTGAAGAGGAGAAGAAAATA Direct Loss 0.956300630411863 0 NA NA prediction 0.912601260823725 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57994170 chr12:57994170 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2598 0 0 1 0 2 PIP4K2C chr12:57994107 3'AG 57994107 Downstream 64bp 2555 chr12 57994170 57994170 1 + G A UCEC 57994170 + 57994150 57994190 41 AGAACCAGAAAGTATATATTGGTGAAGAGGAGAAGAAAATA AGAACCAGAAAGTATATATTAGTGAAGAGGAGAAGAAAATA Direct Loss 0.956300630411863 0 NA NA prediction 0.912601260823725 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57994170 chr12:57994170 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2598 0 0 1 0 2 PIP4K2C chr12:57994220 5'GT 57994220 Upstream 51bp 2556 chr4 142153763 142153763 1 + G T GBM 142153763 + 142153743 142153783 41 CTTGTCCTAAATGTGGGCATGAAACTCAGGAGACTAAGGAC CTTGTCCTAAATGTGGGCATTAAACTCAGGAGACTAAGGAC Direct Loss 0.956299295082032 0 NA NA prediction 0.912598590164064 Functional Loss - ZNF330 ENSG00000109445 CDS Human protein_coding chr4:142153763 chr4:142153763 stopgain 1.000 1 21 hm7G_associated_SNPs_2599 0 0 1 0 2 ZNF330 chr4:142153679 3'AG 142153679 Downstream 85bp 2557 chr4 142153763 142153763 1 + G T GBM 142153763 + 142153743 142153783 41 CTTGTCCTAAATGTGGGCATGAAACTCAGGAGACTAAGGAC CTTGTCCTAAATGTGGGCATTAAACTCAGGAGACTAAGGAC Direct Loss 0.956299295082032 0 NA NA prediction 0.912598590164064 Functional Loss - ZNF330 ENSG00000109445 CDS Human protein_coding chr4:142153763 chr4:142153763 stopgain 1.000 1 21 hm7G_associated_SNPs_2599 0 0 1 0 2 ZNF330 chr4:142153796 5'GT 142153796 Upstream 34bp 2558 chr16 57786463 57786463 1 + G A rs188281175 57786463 + 57786443 57786483 41 ACAATCCGCTTCTGGGACCTGGAGAAGTTCCAGGTGGTGAG ACAATCCGCTTCTGGGACCTAGAGAAGTTCCAGGTGGTGAG Direct Loss 0.956294238869299 0 NA NA prediction 0.912588477738597 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786463 chr16:57786463 synonymous SNV . 0 21 hm7G_associated_SNPs_2600 1 0 1 0 2 KATNB1 chr16:57786442 3'AG 57786442 Downstream 22bp 2559 chr16 57786463 57786463 1 + G A rs188281175 57786463 + 57786443 57786483 41 ACAATCCGCTTCTGGGACCTGGAGAAGTTCCAGGTGGTGAG ACAATCCGCTTCTGGGACCTAGAGAAGTTCCAGGTGGTGAG Direct Loss 0.956294238869299 0 NA NA prediction 0.912588477738597 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786463 chr16:57786463 synonymous SNV . 0 21 hm7G_associated_SNPs_2600 1 0 1 0 2 KATNB1 chr16:57786513 5'GT 57786513 Upstream 51bp 2560 chr4 1746695 1746695 1 + G T BLCA 1746695 + 1746675 1746715 41 ACTAAAGAGAACGAGGAGCTGACCAGGATCTGCGACGACCT ACTAAAGAGAACGAGGAGCTTACCAGGATCTGCGACGACCT Direct Loss 0.956287809453212 0 NA NA prediction 0.912575618906425 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1746695 chr4:1746695 synonymous SNV . 0 21 hm7G_associated_SNPs_2601 0 0 1 0 1 TACC3 chr4:1746675 3'AG 1746675 Downstream 21bp 2561 chrX 133609233 133609233 1 + G A UCEC 133609233 + 133609213 133609253 41 CTGAACGTCTTGCTCGAGATGTGATGAAGGAGATGGGAGGC CTGAACGTCTTGCTCGAGATATGATGAAGGAGATGGGAGGC Direct Loss 0.956276693255322 0 NA NA prediction 0.912553386510644 Functional Loss - HPRT1 ENSG00000165704 CDS Human protein_coding chrX:133609233 chrX:133609233 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2603 0 0 1 1 1 HPRT1 chrX:133609211 3'AG 133609211 Downstream 23bp 2562 chr11 61205277 61205277 1 + G A HNSC 61205277 + 61205257 61205297 41 AAAGAGCCCGCCTGCTCTATGAGAGCAGAAAGAGGGGAATG AAAGAGCCCGCCTGCTCTATAAGAGCAGAAAGAGGGGAATG Direct Loss 0.956276401172555 0 NA NA prediction 0.91255280234511 Functional Loss - SDHAF2 ENSG00000167985;ENSG00000256591 CDS Human other chr11:61205277 chr11:61205277 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2604 0 0 1 0 1 SDHAF2 chr11:61205320 5'GT 61205320 Upstream 44bp 2563 chr11 64940071 64940071 1 + G A CESC 64940071 + 64940051 64940091 41 TTGTGAGCCGCCAGTGCTGTGAGGAGGTGAGGCTGGGAGGC TTGTGAGCCGCCAGTGCTGTAAGGAGGTGAGGCTGGGAGGC Direct Loss 0.956273199625867 0 NA NA prediction 0.912546399251734 Functional Loss - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64940071 chr11:64940071 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_2605 0 0 0 0 1 SPDYC chr11:64940076 5'GT 64940076 Upstream 6bp 2564 chr20 44642168 44642168 1 + G T UCEC 44642168 + 44642148 44642188 41 AACCAGCTGTATTTGTTCAAGGATGGGTGAGGAGGCGGGGT AACCAGCTGTATTTGTTCAATGATGGGTGAGGAGGCGGGGT Direct Loss 0.956270660805737 0 NA NA prediction 0.912541321611474 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642168 chr20:44642168 nonsynonymous SNV 0.979 4 21 hm7G_associated_SNPs_2606 0 0 0 0 1 MMP9 chr20:44642173 5'GT 44642173 Upstream 6bp 2565 chr1 244868937 244868937 1 + G T UCEC 244868937 + 244868917 244868957 41 TATACCCTTTCTACAGAGTTGCCTCCCGAAGGAGTGGCTCA TATACCCTTTCTACAGAGTTTCCTCCCGAAGGAGTGGCTCA Direct Loss 0.956268803035853 0 NA NA prediction 0.912537606071707 Functional Loss - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244868937 chr1:244868937 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_2608 0 0 1 0 1 DESI2 chr1:244868858 3'AG 244868858 Downstream 80bp 2566 chr19 6928165 6928165 1 + G A BLCA 6928165 + 6928145 6928185 41 TCTCTCCACAGCTGCTGGCTGAATACAGAGACAGGGTTCAT TCTCTCCACAGCTGCTGGCTAAATACAGAGACAGGGTTCAT Direct Loss 0.956268234372696 0 NA NA prediction 0.912536468745392 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6928165 chr19:6928165 synonymous SNV . 0 21 hm7G_associated_SNPs_2609 0 0 0 0 2 ADGRE1 chr19:6928156 3'AG 6928156 Downstream 10bp 2567 chr19 6928165 6928165 1 + G A BLCA 6928165 + 6928145 6928185 41 TCTCTCCACAGCTGCTGGCTGAATACAGAGACAGGGTTCAT TCTCTCCACAGCTGCTGGCTAAATACAGAGACAGGGTTCAT Direct Loss 0.956268234372696 0 NA NA prediction 0.912536468745392 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6928165 chr19:6928165 synonymous SNV . 0 21 hm7G_associated_SNPs_2609 0 0 0 0 2 ADGRE1 chr19:6928222 5'GT 6928222 Upstream 58bp 2568 chr12 123466335 123466335 1 + G T UCEC 123466335 + 123466315 123466355 41 AAGCTGAAGAAGAAGGGCAAGGAGAAGGCGGAAGCACAGCA AAGCTGAAGAAGAAGGGCAATGAGAAGGCGGAAGCACAGCA Direct Loss 0.956192727044343 0 NA NA prediction 0.912385454088685 Functional Loss - ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123466335 chr12:123466335 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_2613 0 0 1 0 2 ARL6IP4 chr12:123466356 5'GT 123466356 Upstream 22bp 2569 chr12 123466335 123466335 1 + G T UCEC 123466335 + 123466315 123466355 41 AAGCTGAAGAAGAAGGGCAAGGAGAAGGCGGAAGCACAGCA AAGCTGAAGAAGAAGGGCAATGAGAAGGCGGAAGCACAGCA Direct Loss 0.956192727044343 0 NA NA prediction 0.912385454088685 Functional Loss - ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123466335 chr12:123466335 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_2613 0 0 1 0 2 ARL6IP4 chr12:123466426 5'GT 123466426 Upstream 92bp 2570 chr11 130341245 130341245 1 + G T STAD 130341245 + 130341225 130341265 41 TGGGGGAGACAATAAGAGCTGCAAGAAGGTGACTGGACTCT TGGGGGAGACAATAAGAGCTTCAAGAAGGTGACTGGACTCT Direct Loss 0.956177934066885 0 NA NA prediction 0.912355868133769 Functional Loss - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130341245 chr11:130341245 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2614 0 0 0 0 1 ADAMTS15 chr11:130341278 5'GT 130341278 Upstream 34bp 2571 chr7 99688874 99688874 1 + G T COAD 99688874 + 99688854 99688894 41 CTTGCAGTGGCTGAACACCTGATAGCACAGCACAGCGCCAT CTTGCAGTGGCTGAACACCTTATAGCACAGCACAGCGCCAT Direct Loss 0.956137848035438 0 NA NA prediction 0.912275696070876 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688874 chr7:99688874 synonymous SNV . 0 21 hm7G_associated_SNPs_2616 0 0 1 0 2 COPS6 chr7:99688861 3'AG 99688861 Downstream 14bp 2572 chr7 99688874 99688874 1 + G T COAD 99688874 + 99688854 99688894 41 CTTGCAGTGGCTGAACACCTGATAGCACAGCACAGCGCCAT CTTGCAGTGGCTGAACACCTTATAGCACAGCACAGCGCCAT Direct Loss 0.956137848035438 0 NA NA prediction 0.912275696070876 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688874 chr7:99688874 synonymous SNV . 0 21 hm7G_associated_SNPs_2616 0 0 1 0 2 COPS6 chr7:99688953 5'GT 99688953 Upstream 80bp 2573 chr17 27068130 27068130 1 + G C COAD 27068130 + 27068110 27068150 41 TACACTTTTGGCAGCAATCAGCACGGACAGTTGGGCACCAA TACACTTTTGGCAGCAATCACCACGGACAGTTGGGCACCAA Direct Loss 0.956123199825921 0 NA NA prediction 0.912246399651843 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068130 chr17:27068130 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_2619 0 0 1 0 1 NEK8 chr17:27068096 3'AG 27068096 Downstream 35bp 2574 chr3 42733392 42733392 1 + G T UCEC 42733392 + 42733372 42733412 41 AGGTATAACGAGGAGGAGAAGAAATGGGAGGGTGTCCTGCG AGGTATAACGAGGAGGAGAATAAATGGGAGGGTGTCCTGCG Direct Loss 0.956119694483701 0 NA NA prediction 0.912239388967402 Functional Loss - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42733392 chr3:42733392 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_2620 0 0 0 0 1 KLHL40 chr3:42733374 3'AG 42733374 Downstream 19bp 2575 chr16 23695356 23695356 1 + G T LUAD 23695356 + 23695336 23695376 41 TTCCACCAAGGTTTTCGATTGCTCCCAGCAGCCTGGACCCC TTCCACCAAGGTTTTCGATTTCTCCCAGCAGCCTGGACCCC Direct Loss 0.956097601848241 0 NA NA prediction 0.912195203696482 Functional Loss - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23695356 chr16:23695356 nonsynonymous SNV 0.962 1 21 hm7G_associated_SNPs_2621 0 0 1 0 1 PLK1 chr16:23695410 5'GT 23695410 Upstream 55bp 2576 chr2 242648716 242648716 1 + G T HNSC 242648716 + 242648696 242648736 41 GACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTA GACCAGCGCGTGGAGCGCCTTCAGAAGATCCAGAACGCCTA Direct Loss 0.956070215493115 0 NA NA prediction 0.91214043098623 Functional Loss - ING5 ENSG00000168395 CDS Human protein_coding chr2:242648716 chr2:242648716 synonymous SNV . 0 21 hm7G_associated_SNPs_2623 0 0 1 0 2 ING5 chr2:242648631 3'AG 242648631 Downstream 86bp 2577 chr2 242648716 242648716 1 + G T HNSC 242648716 + 242648696 242648736 41 GACCAGCGCGTGGAGCGCCTGCAGAAGATCCAGAACGCCTA GACCAGCGCGTGGAGCGCCTTCAGAAGATCCAGAACGCCTA Direct Loss 0.956070215493115 0 NA NA prediction 0.91214043098623 Functional Loss - ING5 ENSG00000168395 CDS Human protein_coding chr2:242648716 chr2:242648716 synonymous SNV . 0 21 hm7G_associated_SNPs_2623 0 0 1 0 2 ING5 chr2:242648797 5'GT 242648797 Upstream 82bp 2578 chr2 74173878 74173878 1 + G A CESC 74173878 + 74173858 74173898 41 CAAAGTCTTGGAAACTTGCTGGATATGATGTACCGGGAGCC CAAAGTCTTGGAAACTTGCTAGATATGATGTACCGGGAGCC Direct Loss 0.956059789296657 0 NA NA prediction 0.912119578593314 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74173878 chr2:74173878 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_2624 0 0 1 1 1 DGUOK chr2:74173846 3'AG 74173846 Downstream 33bp 2579 chr7 56049250 56049250 1 + G T LUAD 56049250 + 56049230 56049270 41 AACACGTGGTATGGCGAGCAGGACCAAGCTGGTAGGAAGCG AACACGTGGTATGGCGAGCATGACCAAGCTGGTAGGAAGCG Direct Loss 0.95604637231684 0 NA NA prediction 0.91209274463368 Functional Loss - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56049250 chr7:56049250 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2625 0 0 1 0 2 NIPSNAP2 chr7:56049166 3'AG 56049166 Downstream 85bp 2580 chr7 56049250 56049250 1 + G T LUAD 56049250 + 56049230 56049270 41 AACACGTGGTATGGCGAGCAGGACCAAGCTGGTAGGAAGCG AACACGTGGTATGGCGAGCATGACCAAGCTGGTAGGAAGCG Direct Loss 0.95604637231684 0 NA NA prediction 0.91209274463368 Functional Loss - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56049250 chr7:56049250 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2625 0 0 1 0 2 NIPSNAP2 chr7:56049260 5'GT 56049260 Upstream 11bp 2581 chr11 75511484 75511484 1 + G A OV 75511484 + 75511464 75511504 41 ACCATGTACATGGAGGCCCTGGTGAAGCTCTTCGACAAGCA ACCATGTACATGGAGGCCCTAGTGAAGCTCTTCGACAAGCA Direct Loss 0.956045339189891 0 NA NA prediction 0.912090678379782 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75511484 chr11:75511484 synonymous SNV . 0 21 hm7G_associated_SNPs_2627 0 0 0 0 1 DGAT2 chr11:75511399 3'AG 75511399 Downstream 86bp 2582 chr15 45007752 45007752 1 + G T COAD 45007752 + 45007732 45007772 41 TGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGAC TGAAGAATGGAGAGAGAATTTAAAAAGTGGAGCATTCAGAC Direct Loss 0.956029098940736 0 NA NA prediction 0.912058197881473 Functional Loss - B2M ENSG00000166710 CDS Human protein_coding chr15:45007752 chr15:45007752 stopgain 0.000 0 21 hm7G_associated_SNPs_2628 0 0 1 0 1 B2M chr15:45007757 5'GT 45007757 Upstream 6bp 2583 chr5 145719165 145719165 1 + G A BRCA 145719165 + 145719145 145719185 41 GCCTGCTGGCACGCGCCGAAGCTCTGGCGGCGGTGGATATC GCCTGCTGGCACGCGCCGAAACTCTGGCGGCGGTGGATATC Direct Loss 0.956016344537942 0 NA NA prediction 0.912032689075885 Functional Loss - POU4F3 ENSG00000091010 CDS Human protein_coding chr5:145719165 chr5:145719165 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2629 0 0 0 0 1 POU4F3 chr5:145719111 3'AG 145719111 Downstream 55bp 2584 chr12 7019068 7019068 1 + G A UCEC 7019068 + 7019048 7019088 41 GTCTAGGCCCAAAACATGCTGAAGAAGGTGGAAGGCTTGGA GTCTAGGCCCAAAACATGCTAAAGAAGGTGGAAGGCTTGGA Direct Loss 0.956010293795136 0 NA NA prediction 0.912020587590271 Functional Loss - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7019068 chr12:7019068 synonymous SNV . 0 21 hm7G_associated_SNPs_2630 0 0 0 0 1 LRRC23 chr12:7019054 3'AG 7019054 Downstream 15bp 2585 chr12 8196601 8196601 1 + G T LIHC 8196601 + 8196581 8196621 41 AGAGCCCACGGGGAGGCGTTGCAGGGAGTGGAGAAGCCTCA AGAGCCCACGGGGAGGCGTTTCAGGGAGTGGAGAAGCCTCA Direct Loss 0.95600440693199 0 NA NA prediction 0.912008813863979 Functional Loss - FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196601 chr12:8196601 nonsynonymous SNV 0.959 1 21 hm7G_associated_SNPs_2631 0 0 0 0 2 FOXJ2 chr12:8196547 3'AG 8196547 Downstream 55bp 2586 chr12 8196601 8196601 1 + G T LIHC 8196601 + 8196581 8196621 41 AGAGCCCACGGGGAGGCGTTGCAGGGAGTGGAGAAGCCTCA AGAGCCCACGGGGAGGCGTTTCAGGGAGTGGAGAAGCCTCA Direct Loss 0.95600440693199 0 NA NA prediction 0.912008813863979 Functional Loss - FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196601 chr12:8196601 nonsynonymous SNV 0.959 1 21 hm7G_associated_SNPs_2631 0 0 0 0 2 FOXJ2 chr12:8196687 5'GT 8196687 Upstream 87bp 2587 chr5 173491276 173491276 1 + G T GBM 173491276 + 173491256 173491296 41 GAATATCAGCCGGAACAGAAGAACAAAGGGAAGTTCCGGGT GAATATCAGCCGGAACAGAATAACAAAGGGAAGTTCCGGGT Direct Loss 0.955996459300762 0 NA NA prediction 0.911992918601524 Functional Loss - HMP19 ENSG00000170091 CDS Human protein_coding chr5:173491276 chr5:173491276 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2632 0 0 0 0 2 HMP19 chr5:173491235 3'AG 173491235 Downstream 42bp 2588 chr5 173491276 173491276 1 + G T GBM 173491276 + 173491256 173491296 41 GAATATCAGCCGGAACAGAAGAACAAAGGGAAGTTCCGGGT GAATATCAGCCGGAACAGAATAACAAAGGGAAGTTCCGGGT Direct Loss 0.955996459300762 0 NA NA prediction 0.911992918601524 Functional Loss - HMP19 ENSG00000170091 CDS Human protein_coding chr5:173491276 chr5:173491276 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2632 0 0 0 0 2 HMP19 chr5:173491318 5'GT 173491318 Upstream 43bp 2589 chr18 22020483 22020483 1 + G A HNSC 22020483 + 22020463 22020503 41 CAGATGTAAAGAAGAAAACTGAAGAGGAAGATGTTGAATGT CAGATGTAAAGAAGAAAACTAAAGAGGAAGATGTTGAATGT Direct Loss 0.955994454473502 0 NA NA prediction 0.911988908947003 Functional Loss - IMPACT ENSG00000154059 CDS Human protein_coding chr18:22020483 chr18:22020483 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_2633 0 0 1 0 2 IMPACT chr18:22020460 3'AG 22020460 Downstream 24bp 2590 chr18 22020483 22020483 1 + G A HNSC 22020483 + 22020463 22020503 41 CAGATGTAAAGAAGAAAACTGAAGAGGAAGATGTTGAATGT CAGATGTAAAGAAGAAAACTAAAGAGGAAGATGTTGAATGT Direct Loss 0.955994454473502 0 NA NA prediction 0.911988908947003 Functional Loss - IMPACT ENSG00000154059 CDS Human protein_coding chr18:22020483 chr18:22020483 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_2633 0 0 1 0 2 IMPACT chr18:22020582 5'GT 22020582 Upstream 100bp 2591 chr21 35497685 35497685 1 + G T COAD 35497685 + 35497665 35497705 41 CGTACGATAGAGGCCCTGATGGACAGAGGAGCAATAGTGAG CGTACGATAGAGGCCCTGATTGACAGAGGAGCAATAGTGAG Direct Loss 0.955992908840486 0 NA NA prediction 0.911985817680972 Functional Loss - MRPS6 ENSG00000243927 CDS Human protein_coding chr21:35497685 chr21:35497685 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2634 0 0 1 0 2 MRPS6 chr21:35497641 3'AG 35497641 Downstream 45bp 2592 chr21 35497685 35497685 1 + G T COAD 35497685 + 35497665 35497705 41 CGTACGATAGAGGCCCTGATGGACAGAGGAGCAATAGTGAG CGTACGATAGAGGCCCTGATTGACAGAGGAGCAATAGTGAG Direct Loss 0.955992908840486 0 NA NA prediction 0.911985817680972 Functional Loss - MRPS6 ENSG00000243927 CDS Human protein_coding chr21:35497685 chr21:35497685 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2634 0 0 1 0 2 MRPS6 chr21:35497780 5'GT 35497780 Upstream 96bp 2593 chr16 72046011 72046011 1 + G A OV 72046011 + 72045991 72046031 41 CTTCTCTTCGCCTCCTACCTGATGGCCACGGGAGATGAGCG CTTCTCTTCGCCTCCTACCTAATGGCCACGGGAGATGAGCG Direct Loss 0.955988443723963 0 NA NA prediction 0.911976887447927 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72046011 chr16:72046011 synonymous SNV . 0 21 hm7G_associated_SNPs_2635 0 0 1 0 1 DHODH chr16:72045949 3'AG 72045949 Downstream 63bp 2594 chr7 1275509 1275509 1 + G T BLCA 1275509 + 1275489 1275529 41 GCCAAGTGGAGGAAGAAGGAGAACACGAAAAAGGGCCCGGG GCCAAGTGGAGGAAGAAGGATAACACGAAAAAGGGCCCGGG Direct Loss 0.955954745663734 0 NA NA prediction 0.911909491327467 Functional Loss - UNCX ENSG00000164853 CDS Human protein_coding chr7:1275509 chr7:1275509 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2639 0 0 0 0 1 UNCX chr7:1275468 3'AG 1275468 Downstream 42bp 2595 chr14 23945242 23945242 1 + G A UCEC 23945242 + 23945222 23945262 41 ATTGTTTCTTTTGTAGTTGAGCTCTGAGGATGAGGAGGAAG ATTGTTTCTTTTGTAGTTGAACTCTGAGGATGAGGAGGAAG Direct Loss 0.955942463574063 0 NA NA prediction 0.911884927148126 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23945242 chr14:23945242 nonsynonymous SNV 0.965 1 21 hm7G_associated_SNPs_2640 0 0 1 0 1 NGDN chr14:23945238 3'AG 23945238 Downstream 5bp 2596 chr10 90438254 90438254 1 + G A KIRC 90438254 + 90438234 90438274 41 GAATGTACCAATTGCAGTGTGGAACGGTGGCAAGGACCTGT GAATGTACCAATTGCAGTGTAGAACGGTGGCAAGGACCTGT Direct Loss 0.955942051211706 0 NA NA prediction 0.911884102423411 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90438254 chr10:90438254 stopgain 0.964 1 21 hm7G_associated_SNPs_2641 0 0 0 0 1 LIPF chr10:90438202 3'AG 90438202 Downstream 53bp 2597 chr19 42821926 42821926 1 + G A COAD 42821926 + 42821906 42821946 41 GGCTACGGGCTCATTGGACTGCAGGTGGCGGCCTACGTGTG GGCTACGGGCTCATTGGACTACAGGTGGCGGCCTACGTGTG Direct Loss 0.955926512601261 0 NA NA prediction 0.911853025202521 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42821926 chr19:42821926 synonymous SNV . 0 21 hm7G_associated_SNPs_2643 0 0 0 0 1 TMEM145 chr19:42821861 3'AG 42821861 Downstream 66bp 2598 chr15 51980540 51980540 1 + G C BLCA 51980540 + 51980520 51980560 41 AAATCGCTGCCAGGATTTATGAAGAAAATGACAGAGCCGTG AAATCGCTGCCAGGATTTATCAAGAAAATGACAGAGCCGTG Direct Loss 0.955894594456307 0 NA NA prediction 0.911789188912613 Functional Loss - SCG3 ENSG00000104112 CDS Human protein_coding chr15:51980540 chr15:51980540 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2645 0 0 0 0 2 SCG3 chr15:51980457 3'AG 51980457 Downstream 84bp 2599 chr15 51980540 51980540 1 + G C BLCA 51980540 + 51980520 51980560 41 AAATCGCTGCCAGGATTTATGAAGAAAATGACAGAGCCGTG AAATCGCTGCCAGGATTTATCAAGAAAATGACAGAGCCGTG Direct Loss 0.955894594456307 0 NA NA prediction 0.911789188912613 Functional Loss - SCG3 ENSG00000104112 CDS Human protein_coding chr15:51980540 chr15:51980540 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2645 0 0 0 0 2 SCG3 chr15:51980599 5'GT 51980599 Upstream 60bp 2600 chr14 36304068 36304068 1 + G T KIRC 36304068 + 36304048 36304088 41 AGGAATCTATAGAGAGCTCTGCTTAGAATCTGTAAAGAACA AGGAATCTATAGAGAGCTCTTCTTAGAATCTGTAAAGAACA Direct Loss 0.955879569425719 0 NA NA prediction 0.911759138851438 Functional Loss - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36304068 chr14:36304068 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2647 0 0 1 0 2 BRMS1L chr14:36304050 3'AG 36304050 Downstream 19bp 2601 chr14 36304068 36304068 1 + G T KIRC 36304068 + 36304048 36304088 41 AGGAATCTATAGAGAGCTCTGCTTAGAATCTGTAAAGAACA AGGAATCTATAGAGAGCTCTTCTTAGAATCTGTAAAGAACA Direct Loss 0.955879569425719 0 NA NA prediction 0.911759138851438 Functional Loss - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36304068 chr14:36304068 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2647 0 0 1 0 2 BRMS1L chr14:36304129 5'GT 36304129 Upstream 62bp 2602 chr3 50231210 50231210 1 + G A STAD 50231210 + 50231190 50231230 41 CTCTCCGACCTGGAGCGCCTGGTAACCCCGGGCTACGTGCC CTCTCCGACCTGGAGCGCCTAGTAACCCCGGGCTACGTGCC Direct Loss 0.955870410114753 0 NA NA prediction 0.911740820229507 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231210 chr3:50231210 synonymous SNV . 0 21 hm7G_associated_SNPs_2648 0 0 0 0 1 GNAT1 chr3:50231186 3'AG 50231186 Downstream 25bp 2603 chr17 4846555 4846555 1 + G T STAD 4846555 + 4846535 4846575 41 ACAGGGATTGTGGGACTGCTGGTTTTGGCCATGGGAGCAGT ACAGGGATTGTGGGACTGCTTGTTTTGGCCATGGGAGCAGT Direct Loss 0.955866230465216 0 NA NA prediction 0.911732460930433 Functional Loss - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846555 chr17:4846555 synonymous SNV . 0 21 hm7G_associated_SNPs_2649 0 0 1 0 2 RNF167 chr17:4846474 3'AG 4846474 Downstream 82bp 2604 chr17 4846555 4846555 1 + G T STAD 4846555 + 4846535 4846575 41 ACAGGGATTGTGGGACTGCTGGTTTTGGCCATGGGAGCAGT ACAGGGATTGTGGGACTGCTTGTTTTGGCCATGGGAGCAGT Direct Loss 0.955866230465216 0 NA NA prediction 0.911732460930433 Functional Loss - RNF167 ENSG00000108523 CDS Human protein_coding chr17:4846555 chr17:4846555 synonymous SNV . 0 21 hm7G_associated_SNPs_2649 0 0 1 0 2 RNF167 chr17:4846579 5'GT 4846579 Upstream 25bp 2605 chr2 99992890 99992890 1 + G A UCEC 99992890 + 99992870 99992910 41 AAGAAGAGGAAGAAGAAGATGAAGAAAGTGAAGAAGAGGAG AAGAAGAGGAAGAAGAAGATAAAGAAAGTGAAGAAGAGGAG Direct Loss 0.955844016640482 0 NA NA prediction 0.911688033280964 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99992890 chr2:99992890 nonsynonymous SNV 0.988 0 21 hm7G_associated_SNPs_2650 0 0 1 0 1 EIF5B chr2:99992810 3'AG 99992810 Downstream 81bp 2606 chr20 44421333 44421333 1 + G A BLCA 44421333 + 44421313 44421353 41 CAGAACCCTTGGAACATAATGATAAAGCACCGGCAGGTGCA CAGAACCCTTGGAACATAATAATAAAGCACCGGCAGGTGCA Direct Loss 0.955825115336895 0 NA NA prediction 0.91165023067379 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44421333 chr20:44421333 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2651 0 0 0 0 2 DNTTIP1 chr20:44421316 3'AG 44421316 Downstream 18bp 2607 chr20 44421333 44421333 1 + G A BLCA 44421333 + 44421313 44421353 41 CAGAACCCTTGGAACATAATGATAAAGCACCGGCAGGTGCA CAGAACCCTTGGAACATAATAATAAAGCACCGGCAGGTGCA Direct Loss 0.955825115336895 0 NA NA prediction 0.91165023067379 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44421333 chr20:44421333 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2651 0 0 0 0 2 DNTTIP1 chr20:44421386 5'GT 44421386 Upstream 54bp 2608 chr5 154254918 154254918 1 + G C rs34488733 154254918 + 154254898 154254938 41 TATGGCTTAGGCACAGGAGTGGCCCAGAAGCAGAATGAGGA TATGGCTTAGGCACAGGAGTCGCCCAGAAGCAGAATGAGGA Direct Loss 0.955795085038019 0 NA NA prediction 0.911590170076038 Functional Loss - CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154254918 chr5:154254918 synonymous SNV . 0 21 hm7G_associated_SNPs_2652 0 0 1 0 1 CNOT8 chr5:154254850 3'AG 154254850 Downstream 69bp 2609 chr7 142637500 142637500 1 + G A SKCM 142637500 + 142637480 142637520 41 TCAGTGGGTGAGATGTGGCAGGTGGTGGACATGGCCCAGCA TCAGTGGGTGAGATGTGGCAAGTGGTGGACATGGCCCAGCA Direct Loss 0.955794504848084 0 NA NA prediction 0.911589009696169 Functional Loss - C7orf34 ENSG00000165131 CDS Human protein_coding chr7:142637500 chr7:142637500 synonymous SNV . 0 21 hm7G_associated_SNPs_2653 0 0 0 0 1 C7orf34 chr7:142637439 3'AG 142637439 Downstream 62bp 2610 chr4 109546294 109546294 1 + G A PAAD 109546294 + 109546274 109546314 41 TCCTTTCTAGGATCAAGCGTGCTTTCCTTATCGAGGAGCAG TCCTTTCTAGGATCAAGCGTACTTTCCTTATCGAGGAGCAG Direct Loss 0.955783204887074 0 NA NA prediction 0.911566409774148 Functional Loss - RPL34 ENSG00000109475 CDS Human protein_coding chr4:109546294 chr4:109546294 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2654 0 0 1 0 1 RPL34 chr4:109546284 3'AG 109546284 Downstream 11bp 2611 chr8 134237635 134237635 1 + G A rs35513885 134237635 + 134237615 134237655 41 TCTGTTCCCCACACACAGATGCTGTGGGTGAGGTGGAGGCA TCTGTTCCCCACACACAGATACTGTGGGTGAGGTGGAGGCA Direct Loss 0.955782636985182 0 NA NA prediction 0.911565273970364 Functional Loss - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134237635 chr8:134237635 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_2655 0 0 1 0 1 WISP1 chr8:134237633 3'AG 134237633 Downstream 3bp 2612 chr11 125792753 125792753 1 + G A LUSC 125792753 + 125792733 125792773 41 TCAACGCTGAAGACATGGATGAAATTGAAAAGATTGACTAT TCAACGCTGAAGACATGGATAAAATTGAAAAGATTGACTAT Direct Loss 0.955777572890651 0 NA NA prediction 0.911555145781302 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125792753 chr11:125792753 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2656 0 0 1 0 1 DDX25 chr11:125792715 3'AG 125792715 Downstream 39bp 2613 chr21 43963555 43963555 1 + G C BLCA 43963555 + 43963535 43963575 41 TTGTGCTGCAGGAGAGGTTTGATTATGGGGGTCTGGAACTC TTGTGCTGCAGGAGAGGTTTCATTATGGGGGTCTGGAACTC Direct Loss 0.955763905983994 0 NA NA prediction 0.911527811967988 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43963555 chr21:43963555 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_2659 0 0 0 0 1 SLC37A1 chr21:43963546 3'AG 43963546 Downstream 10bp 2614 chr11 6232180 6232180 1 + G A SARC 6232180 + 6232160 6232200 41 CCCGCAGCCCTCCACCAGGAGCCCAGGGTGGGGGCCCCAGG CCCGCAGCCCTCCACCAGGAACCCAGGGTGGGGGCCCCAGG Direct Loss 0.955720678894138 0 NA NA prediction 0.911441357788277 Functional Loss - C11orf42 ENSG00000180878 CDS Human protein_coding chr11:6232180 chr11:6232180 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_2661 0 0 0 0 1 C11orf42 chr11:6232142 3'AG 6232142 Downstream 39bp 2615 chr16 84230520 84230520 1 + G A SKCM 84230520 + 84230500 84230540 41 AGGCAGCTGTCTCTCCTCCTGGACCAGCAGGGCCTGGGGGC AGGCAGCTGTCTCTCCTCCTAGACCAGCAGGGCCTGGGGGC Direct Loss 0.955715293321064 0 NA NA prediction 0.911430586642128 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230520 chr16:84230520 synonymous SNV . 0 21 hm7G_associated_SNPs_2662 0 0 0 0 1 ADAD2 chr16:84230476 3'AG 84230476 Downstream 45bp 2616 chr8 82665442 82665442 1 + G A UCEC 82665442 + 82665422 82665462 41 TGTTGAGGAACATGGGCTTTGCAGCAAAAGCGATGAAATCT TGTTGAGGAACATGGGCTTTACAGCAAAAGCGATGAAATCT Direct Loss 0.95571308171908 0 NA NA prediction 0.911426163438159 Functional Loss - CHMP4C ENSG00000164695 CDS Human protein_coding chr8:82665442 chr8:82665442 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_2663 0 0 1 0 1 CHMP4C chr8:82665476 5'GT 82665476 Upstream 35bp 2617 chr22 18066213 18066213 1 + G A UCEC 18066213 + 18066193 18066233 41 ACCTGAAGATGGAGATGCTTGCCGGGTGTGGGGCTGGGATG ACCTGAAGATGGAGATGCTTACCGGGTGTGGGGCTGGGATG Direct Loss 0.955681975806699 0 NA NA prediction 0.911363951613399 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18066213 chr22:18066213 nonsynonymous SNV 0.561 5 21 hm7G_associated_SNPs_2664 0 0 0 0 2 SLC25A18 chr22:18066182 3'AG 18066182 Downstream 32bp 2618 chr22 18066213 18066213 1 + G A UCEC 18066213 + 18066193 18066233 41 ACCTGAAGATGGAGATGCTTGCCGGGTGTGGGGCTGGGATG ACCTGAAGATGGAGATGCTTACCGGGTGTGGGGCTGGGATG Direct Loss 0.955681975806699 0 NA NA prediction 0.911363951613399 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18066213 chr22:18066213 nonsynonymous SNV 0.561 5 21 hm7G_associated_SNPs_2664 0 0 0 0 2 SLC25A18 chr22:18066300 5'GT 18066300 Upstream 88bp 2619 chr5 175305951 175305951 1 + G A rs188817237 175305951 + 175305931 175305971 41 AAGATGCTGGGGGGAGAGGAGGAGAAGGACCCCGACGCGCA AAGATGCTGGGGGGAGAGGAAGAGAAGGACCCCGACGCGCA Direct Loss 0.955673893306625 0 NA NA prediction 0.91134778661325 Functional Loss - CPLX2 ENSG00000145920 CDS Human protein_coding chr5:175305951 chr5:175305951 synonymous SNV . 0 21 hm7G_associated_SNPs_2666 0 0 1 0 1 CPLX2 chr5:175305911 3'AG 175305911 Downstream 41bp 2620 chr10 17702489 17702489 1 + G C LUAD 17702489 + 17702469 17702509 41 CAACCAGCGAGATGAATACTGCTGAGGACTGGGGCCTCATT CAACCAGCGAGATGAATACTCCTGAGGACTGGGGCCTCATT Direct Loss 0.955668361159995 0 NA NA prediction 0.911336722319991 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17702489 chr10:17702489 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2668 0 0 1 0 2 STAM chr10:17702463 3'AG 17702463 Downstream 27bp 2621 chr10 17702489 17702489 1 + G C LUAD 17702489 + 17702469 17702509 41 CAACCAGCGAGATGAATACTGCTGAGGACTGGGGCCTCATT CAACCAGCGAGATGAATACTCCTGAGGACTGGGGCCTCATT Direct Loss 0.955668361159995 0 NA NA prediction 0.911336722319991 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17702489 chr10:17702489 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2668 0 0 1 0 2 STAM chr10:17702547 5'GT 17702547 Upstream 59bp 2622 chr5 177019607 177019607 1 + G T SARC 177019607 + 177019587 177019627 41 ACGCAGCTGTATGACAAGCAGCGGGAGGAGTACCAGCCGGC ACGCAGCTGTATGACAAGCATCGGGAGGAGTACCAGCCGGC Direct Loss 0.955667051071738 0 NA NA prediction 0.911334102143477 Functional Loss - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019607 chr5:177019607 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2669 0 0 1 0 2 TMED9 chr5:177019576 3'AG 177019576 Downstream 32bp 2623 chr5 177019607 177019607 1 + G T SARC 177019607 + 177019587 177019627 41 ACGCAGCTGTATGACAAGCAGCGGGAGGAGTACCAGCCGGC ACGCAGCTGTATGACAAGCATCGGGAGGAGTACCAGCCGGC Direct Loss 0.955667051071738 0 NA NA prediction 0.911334102143477 Functional Loss - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177019607 chr5:177019607 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2669 0 0 1 0 2 TMED9 chr5:177019676 5'GT 177019676 Upstream 70bp 2624 chr1 78383864 78383864 1 + G T GBM 78383864 + 78383844 78383884 41 ACAAAGACAAGAGGAACAAAGGAAGAGAACGGAGGAGGAAC ACAAAGACAAGAGGAACAAATGAAGAGAACGGAGGAGGAAC Direct Loss 0.955650550137913 0 NA NA prediction 0.911301100275826 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78383864 chr1:78383864 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2671 0 0 0 0 1 NEXN chr1:78383958 5'GT 78383958 Upstream 95bp 2625 chr5 54320498 54320498 1 + G A SKCM 54320498 + 54320478 54320518 41 ACTTTTGTAGGTTTCAATATGGAAATTATTGGAGGGAAAGA ACTTTTGTAGGTTTCAATATAGAAATTATTGGAGGGAAAGA Direct Loss 0.955649715506402 0 NA NA prediction 0.911299431012803 Functional Loss - GZMK ENSG00000113088 CDS Human protein_coding chr5:54320498 chr5:54320498 nonsynonymous SNV 0.885 1 21 hm7G_associated_SNPs_2672 0 0 0 0 1 GZMK chr5:54320488 3'AG 54320488 Downstream 11bp 2626 chr1 32669812 32669812 1 + G A UCEC 32669812 + 32669792 32669832 41 GAATGCTCCTTTGAGCAGCTGGAGCACGTTCGGGAGATGCA GAATGCTCCTTTGAGCAGCTAGAGCACGTTCGGGAGATGCA Direct Loss 0.955643416096041 0 NA NA prediction 0.911286832192083 Functional Loss - CCDC28B ENSG00000160050 CDS Human protein_coding chr1:32669812 chr1:32669812 synonymous SNV . 0 21 hm7G_associated_SNPs_2673 0 0 1 0 1 CCDC28B chr1:32669787 3'AG 32669787 Downstream 26bp 2627 chr12 69981998 69981998 1 + G A READ 69981998 + 69981978 69982018 41 GCGGGTTGGAGAGAAGCCACGAAGGCTGCAAGAGAGGCGCT GCGGGTTGGAGAGAAGCCACAAAGGCTGCAAGAGAGGCGCT Direct Loss 0.955640209325857 0 NA NA prediction 0.911280418651713 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69981998 chr12:69981998 synonymous SNV . 0 21 hm7G_associated_SNPs_2674 0 0 1 0 2 CCT2 chr12:69981930 3'AG 69981930 Downstream 69bp 2628 chr12 69981998 69981998 1 + G A READ 69981998 + 69981978 69982018 41 GCGGGTTGGAGAGAAGCCACGAAGGCTGCAAGAGAGGCGCT GCGGGTTGGAGAGAAGCCACAAAGGCTGCAAGAGAGGCGCT Direct Loss 0.955640209325857 0 NA NA prediction 0.911280418651713 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69981998 chr12:69981998 synonymous SNV . 0 21 hm7G_associated_SNPs_2674 0 0 1 0 2 CCT2 chr12:69982042 5'GT 69982042 Upstream 45bp 2629 chr5 177035571 177035571 1 + G A SKCM 177035571 + 177035551 177035591 41 GTCCAACCGCTTCTGGGGCTGGGGCCGCGAGGACGACGAGT GTCCAACCGCTTCTGGGGCTAGGGCCGCGAGGACGACGAGT Direct Loss 0.95563320809117 0 NA NA prediction 0.911266416182339 Functional Loss - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177035571 chr5:177035571 stopgain 1.000 1 21 hm7G_associated_SNPs_2675 0 0 1 0 2 B4GALT7 chr5:177035540 3'AG 177035540 Downstream 32bp 2630 chr5 177035571 177035571 1 + G A SKCM 177035571 + 177035551 177035591 41 GTCCAACCGCTTCTGGGGCTGGGGCCGCGAGGACGACGAGT GTCCAACCGCTTCTGGGGCTAGGGCCGCGAGGACGACGAGT Direct Loss 0.95563320809117 0 NA NA prediction 0.911266416182339 Functional Loss - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177035571 chr5:177035571 stopgain 1.000 1 21 hm7G_associated_SNPs_2675 0 0 1 0 2 B4GALT7 chr5:177035623 5'GT 177035623 Upstream 53bp 2631 chrX 12809685 12809685 1 + G A LUSC 12809685 + 12809665 12809705 41 CAGCGCGTGGCCGACCGCCTGGGCCTGGAGCTGGGCAAGGT CAGCGCGTGGCCGACCGCCTAGGCCTGGAGCTGGGCAAGGT Direct Loss 0.955632720219184 0 NA NA prediction 0.911265440438369 Functional Loss - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12809685 chrX:12809685 synonymous SNV . 0 21 hm7G_associated_SNPs_2676 0 0 1 0 1 PRPS2 chrX:12809738 5'GT 12809738 Upstream 54bp 2632 chr15 40710403 40710403 1 + G T HNSC 40710403 + 40710383 40710423 41 AGCTGTATGAGATAGGGGCTGGGACCAGCGAGGTGAGGCGG AGCTGTATGAGATAGGGGCTTGGACCAGCGAGGTGAGGCGG Direct Loss 0.955629741618338 0 NA NA prediction 0.911259483236676 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40710403 chr15:40710403 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_2677 0 0 1 0 1 IVD chr15:40710329 3'AG 40710329 Downstream 75bp 2633 chr4 88732568 88732568 1 + G C LUSC 88732568 + 88732548 88732588 41 AGGAAAGTGATGAAGAAGAAGAGGAGGAAGAGGAAGGAAAT AGGAAAGTGATGAAGAAGAACAGGAGGAAGAGGAAGGAAAT Direct Loss 0.955627115585405 0 NA NA prediction 0.91125423117081 Functional Loss - IBSP ENSG00000029559 CDS Human protein_coding chr4:88732568 chr4:88732568 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_2679 0 0 0 0 1 IBSP chr4:88732514 3'AG 88732514 Downstream 55bp 2634 chr10 26822428 26822428 1 + G A COAD 26822428 + 26822408 26822448 41 AAACTAATGAGAAAATGAATGCTAAGAACAAGGAATCCTTA AAACTAATGAGAAAATGAATACTAAGAACAAGGAATCCTTA Direct Loss 0.95562504754245 0 NA NA prediction 0.911250095084899 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26822428 chr10:26822428 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2680 0 0 0 0 2 APBB1IP chr10:26822368 3'AG 26822368 Downstream 61bp 2635 chr10 26822428 26822428 1 + G A COAD 26822428 + 26822408 26822448 41 AAACTAATGAGAAAATGAATGCTAAGAACAAGGAATCCTTA AAACTAATGAGAAAATGAATACTAAGAACAAGGAATCCTTA Direct Loss 0.95562504754245 0 NA NA prediction 0.911250095084899 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26822428 chr10:26822428 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2680 0 0 0 0 2 APBB1IP chr10:26822454 5'GT 26822454 Upstream 27bp 2636 chr11 69462905 69462905 1 + G A LUSC 69462905 + 69462885 69462925 41 TCTCCAGAGTGATCAAGTGTGACCCGGTAAGTGAGGGTGAT TCTCCAGAGTGATCAAGTGTAACCCGGTAAGTGAGGGTGAT Direct Loss 0.955617617018761 0 NA NA prediction 0.911235234037522 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69462905 chr11:69462905 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_2681 0 0 1 0 1 CCND1 chr11:69462910 5'GT 69462910 Upstream 6bp 2637 chr3 190936662 190936662 1 + G C BLCA 190936662 + 190936642 190936682 41 CCCTAGAAAATGATGTGATTGAGACAAAGAAGAAAAGGAGT CCCTAGAAAATGATGTGATTCAGACAAAGAAGAAAAGGAGT Direct Loss 0.955602618697688 0 NA NA prediction 0.911205237395375 Functional Loss - OSTN ENSG00000188729 CDS Human protein_coding chr3:190936662 chr3:190936662 nonsynonymous SNV 0.885 4 21 hm7G_associated_SNPs_2682 0 0 0 0 1 OSTN chr3:190936750 5'GT 190936750 Upstream 89bp 2638 chr4 113184195 113184195 1 + G A PRAD 113184195 + 113184175 113184215 41 AAGAAGAAGCTTTATACGCTGCACAGCGTGAAGCAGCCAGG AAGAAGAAGCTTTATACGCTACACAGCGTGAAGCAGCCAGG Direct Loss 0.955596199139735 0 NA NA prediction 0.91119239827947 Functional Loss - AP1AR ENSG00000138660 CDS Human protein_coding chr4:113184195 chr4:113184195 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2683 0 0 1 0 2 AP1AR chr4:113184144 3'AG 113184144 Downstream 52bp 2639 chr4 113184195 113184195 1 + G A PRAD 113184195 + 113184175 113184215 41 AAGAAGAAGCTTTATACGCTGCACAGCGTGAAGCAGCCAGG AAGAAGAAGCTTTATACGCTACACAGCGTGAAGCAGCCAGG Direct Loss 0.955596199139735 0 NA NA prediction 0.91119239827947 Functional Loss - AP1AR ENSG00000138660 CDS Human protein_coding chr4:113184195 chr4:113184195 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2683 0 0 1 0 2 AP1AR chr4:113184242 5'GT 113184242 Upstream 48bp 2640 chr22 19423194 19423194 1 + G T UCEC 19423194 + 19423174 19423214 41 GTGGAGCTCACCTTTGAGGAGACTGAGAGGAGAGCTCTGCT GTGGAGCTCACCTTTGAGGATACTGAGAGGAGAGCTCTGCT Direct Loss 0.955562241943967 0 NA NA prediction 0.911124483887934 Functional Loss - MRPL40 ENSG00000185608 CDS Human protein_coding chr22:19423194 chr22:19423194 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_2684 0 0 1 0 1 MRPL40 chr22:19423161 3'AG 19423161 Downstream 34bp 2641 chr10 103587693 103587693 1 - C T LGG 103587693 - 103587673 103587713 41 TGGGCAAGTACACGTACCCTGCACTCCGGGAGGAGGCCCCA TGGGCAAGTACACGTACCCTACACTCCGGGAGGAGGCCCCA Direct Loss 0.955527396589983 0 NA NA prediction 0.911054793179965 Functional Loss - KCNIP2 ENSG00000120049 CDS Human protein_coding chr10:103587693 chr10:103587693 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_2685 0 0 1 0 2 KCNIP2 chr10:103587646 5'GT 103587646 Upstream 48bp 2642 chr10 103587693 103587693 1 - C T LGG 103587693 - 103587673 103587713 41 TGGGCAAGTACACGTACCCTGCACTCCGGGAGGAGGCCCCA TGGGCAAGTACACGTACCCTACACTCCGGGAGGAGGCCCCA Direct Loss 0.955527396589983 0 NA NA prediction 0.911054793179965 Functional Loss - KCNIP2 ENSG00000120049 CDS Human protein_coding chr10:103587693 chr10:103587693 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_2685 0 0 1 0 2 KCNIP2 chr10:103587750 3'AG 103587750 Downstream 58bp 2643 chr3 123348452 123348452 1 + G A rs367656778 123348452 + 123348432 123348472 41 TCGTTATCGTTGTCTCCCATGAAGGGGGAAAGGCCACTGAC TCGTTATCGTTGTCTCCCATAAAGGGGGAAAGGCCACTGAC Direct Loss 0.955522921395025 0 NA NA prediction 0.911045842790049 Functional Loss - MYLK ENSG00000065534 CDS Human antisense chr3:123348452 chr3:123348452 synonymous SNV . 0 21 hm7G_associated_SNPs_2686 0 0 1 0 1 MYLK-AS1 chr3:123348528 5'GT 123348528 Upstream 77bp 2644 chr17 38318315 38318315 1 + G T UCEC 38318315 + 38318295 38318335 41 GCCCTAAGCATTTGGATGATGATGAAGATCGGAAGAATCCA GCCCTAAGCATTTGGATGATTATGAAGATCGGAAGAATCCA Direct Loss 0.955506315633199 0 NA NA prediction 0.911012631266397 Functional Loss - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318315 chr17:38318315 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2687 0 0 1 0 2 CASC3 chr17:38318255 3'AG 38318255 Downstream 61bp 2645 chr17 38318315 38318315 1 + G T UCEC 38318315 + 38318295 38318335 41 GCCCTAAGCATTTGGATGATGATGAAGATCGGAAGAATCCA GCCCTAAGCATTTGGATGATTATGAAGATCGGAAGAATCCA Direct Loss 0.955506315633199 0 NA NA prediction 0.911012631266397 Functional Loss - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38318315 chr17:38318315 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2687 0 0 1 0 2 CASC3 chr17:38318406 5'GT 38318406 Upstream 92bp 2646 chr20 55204644 55204644 1 + G C LUAD 55204644 + 55204624 55204664 41 TGTCAAGTACGAAGAGGACTGCGAGGTGAGCTGGGGCTCCG TGTCAAGTACGAAGAGGACTCCGAGGTGAGCTGGGGCTCCG Direct Loss 0.955505734002908 0 NA NA prediction 0.911011468005815 Functional Loss - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55204644 chr20:55204644 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_2688 0 0 0 0 1 TFAP2C chr20:55204648 5'GT 55204648 Upstream 5bp 2647 chr10 71392599 71392599 1 + G A COAD 71392599 + 71392579 71392619 41 GGGGGTCCTGGCCCCCGCCAGCAGCAGGCAGGTGCCAGGCT GGGGGTCCTGGCCCCCGCCAACAGCAGGCAGGTGCCAGGCT Direct Loss 0.955495495749579 0 NA NA prediction 0.910990991499157 Functional Loss - C10orf35 ENSG00000171224 CDS Human protein_coding chr10:71392599 chr10:71392599 synonymous SNV . 0 21 hm7G_associated_SNPs_2689 0 0 0 0 1 C10orf35 chr10:71392546 3'AG 71392546 Downstream 54bp 2648 chr6 16254845 16254845 1 + G A PRAD 16254845 + 16254825 16254865 41 TGATCTGGAAAAGATGACCAGCATCCTGGAAGCTGTGCCAC TGATCTGGAAAAGATGACCAACATCCTGGAAGCTGTGCCAC Direct Loss 0.95548795966027 0 NA NA prediction 0.910975919320541 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16254845 chr6:16254845 nonsynonymous SNV 0.869 0 21 hm7G_associated_SNPs_2690 0 0 1 0 1 GMPR chr6:16254793 3'AG 16254793 Downstream 53bp 2649 chrX 100240874 100240874 1 + G A UCEC 100240874 + 100240854 100240894 41 TCTTAACACATCTGCTGTCCGATAAAAGAGTGGCAGGGAAA TCTTAACACATCTGCTGTCCAATAAAAGAGTGGCAGGGAAA Direct Loss 0.955456942039186 0 NA NA prediction 0.910913884078372 Functional Loss - ARL13A ENSG00000174225 CDS Human protein_coding chrX:100240874 chrX:100240874 nonsynonymous SNV 0.161 1 21 hm7G_associated_SNPs_2693 0 0 0 0 1 ARL13A chrX:100240905 5'GT 100240905 Upstream 32bp 2650 chr9 125054075 125054075 1 + G C LUSC 125054075 + 125054055 125054095 41 AGAGAAAGTGGAATGAATCTGAACCCAGAAGTGGAAGGGAC AGAGAAAGTGGAATGAATCTCAACCCAGAAGTGGAAGGGAC Direct Loss 0.955439535829968 0 NA NA prediction 0.910879071659935 Functional Loss - MRRF ENSG00000148187 CDS Human protein_coding chr9:125054075 chr9:125054075 synonymous SNV . 0 21 hm7G_associated_SNPs_2694 0 0 1 0 1 MRRF chr9:125054119 5'GT 125054119 Upstream 45bp 2651 chr12 110780168 110780168 1 + G T SARC 110780168 + 110780148 110780188 41 ACTTCTCCACCATTGTGGCTGCCGTTGAGGAGGGGCGGGCA ACTTCTCCACCATTGTGGCTTCCGTTGAGGAGGGGCGGGCA Direct Loss 0.955375393561839 0 NA NA prediction 0.910750787123677 Functional Loss - ATP2A2 ENSG00000174437 CDS Human protein_coding chr12:110780168 chr12:110780168 nonsynonymous SNV 0.920 5 21 hm7G_associated_SNPs_2698 0 0 1 0 1 ATP2A2 chr12:110780253 5'GT 110780253 Upstream 86bp 2652 chr2 28002382 28002382 1 + G T HNSC 28002382 + 28002362 28002402 41 AAATGACTTTGATTTATAAAGAGAAGACTGAGGGCGGGGAT AAATGACTTTGATTTATAAATAGAAGACTGAGGGCGGGGAT Direct Loss 0.955373117789469 0 NA NA prediction 0.910746235578937 Functional Loss - MRPL33 ENSG00000243147 CDS Human protein_coding chr2:28002382 chr2:28002382 stopgain 0.996 0 21 hm7G_associated_SNPs_2699 0 0 1 0 1 MRPL33 chr2:28002300 3'AG 28002300 Downstream 83bp 2653 chr19 49378910 49378910 1 + G C OV 49378910 + 49378890 49378930 41 TCACTGTCCATTTCCTGGCTGTCTGGGCAGGGCCGGCCCAG TCACTGTCCATTTCCTGGCTCTCTGGGCAGGGCCGGCCCAG Direct Loss 0.955368913784404 0 NA NA prediction 0.910737827568808 Functional Loss - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49378910 chr19:49378910 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_2700 0 0 1 0 1 PPP1R15A chr19:49378871 3'AG 49378871 Downstream 40bp 2654 chr2 73475028 73475028 1 + G T SARC 73475028 + 73475008 73475048 41 TGAAAGCTGAGAAAGACAATGCTGAGATAAGAGTCCACACA TGAAAGCTGAGAAAGACAATTCTGAGATAAGAGTCCACACA Direct Loss 0.955362058680895 0 NA NA prediction 0.91072411736179 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73475028 chr2:73475028 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_2701 0 0 1 0 1 CCT7 chr2:73475054 5'GT 73475054 Upstream 27bp 2655 chr8 145151105 145151105 1 + G A STAD 145151105 + 145151085 145151125 41 TTCGTGGCCTACCGCCACCTGGTGGGCGTGTGCTACACGGA TTCGTGGCCTACCGCCACCTAGTGGGCGTGTGCTACACGGA Direct Loss 0.955341011837119 0 NA NA prediction 0.910682023674238 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151105 chr8:145151105 synonymous SNV . 0 21 hm7G_associated_SNPs_2703 0 0 1 0 2 CYC1 chr8:145151027 3'AG 145151027 Downstream 79bp 2656 chr8 145151105 145151105 1 + G A STAD 145151105 + 145151085 145151125 41 TTCGTGGCCTACCGCCACCTGGTGGGCGTGTGCTACACGGA TTCGTGGCCTACCGCCACCTAGTGGGCGTGTGCTACACGGA Direct Loss 0.955341011837119 0 NA NA prediction 0.910682023674238 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151105 chr8:145151105 synonymous SNV . 0 21 hm7G_associated_SNPs_2703 0 0 1 0 2 CYC1 chr8:145151153 5'GT 145151153 Upstream 49bp 2657 chr19 49510586 49510586 1 + G A CESC 49510586 + 49510566 49510606 41 ACGGAGATCATCGAAGGGGAGGTGGTGGAGATCCAGATTGA ACGGAGATCATCGAAGGGGAAGTGGTGGAGATCCAGATTGA Direct Loss 0.955311760141631 0 NA NA prediction 0.910623520283262 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49510586 chr19:49510586 synonymous SNV . 0 21 hm7G_associated_SNPs_2705 0 0 1 0 2 RUVBL2 chr19:49510559 3'AG 49510559 Downstream 28bp 2658 chr19 49510586 49510586 1 + G A CESC 49510586 + 49510566 49510606 41 ACGGAGATCATCGAAGGGGAGGTGGTGGAGATCCAGATTGA ACGGAGATCATCGAAGGGGAAGTGGTGGAGATCCAGATTGA Direct Loss 0.955311760141631 0 NA NA prediction 0.910623520283262 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49510586 chr19:49510586 synonymous SNV . 0 21 hm7G_associated_SNPs_2705 0 0 1 0 2 RUVBL2 chr19:49510625 5'GT 49510625 Upstream 40bp 2659 chr2 224828559 224828559 1 + G A UCEC 224828559 + 224828539 224828579 41 GGGCTATTGGTAGAAGAACTGAAGAAAAGGAATGTTTCAGC GGGCTATTGGTAGAAGAACTAAAGAAAAGGAATGTTTCAGC Direct Loss 0.955300339979534 0 NA NA prediction 0.910600679959068 Functional Loss - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224828559 chr2:224828559 synonymous SNV . 0 21 hm7G_associated_SNPs_2708 0 0 1 0 2 MRPL44 chr2:224828473 3'AG 224828473 Downstream 87bp 2660 chr2 224828559 224828559 1 + G A UCEC 224828559 + 224828539 224828579 41 GGGCTATTGGTAGAAGAACTGAAGAAAAGGAATGTTTCAGC GGGCTATTGGTAGAAGAACTAAAGAAAAGGAATGTTTCAGC Direct Loss 0.955300339979534 0 NA NA prediction 0.910600679959068 Functional Loss - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224828559 chr2:224828559 synonymous SNV . 0 21 hm7G_associated_SNPs_2708 0 0 1 0 2 MRPL44 chr2:224828651 5'GT 224828651 Upstream 93bp 2661 chr11 65780329 65780329 1 + G A SKCM 65780329 + 65780309 65780349 41 ATCAAGTACTTCCTGACGATGGAGATGGGGAGCACAGACTG ATCAAGTACTTCCTGACGATAGAGATGGGGAGCACAGACTG Direct Loss 0.955279741798657 0 NA NA prediction 0.910559483597313 Functional Loss - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780329 chr11:65780329 nonsynonymous SNV 0.003 0 21 hm7G_associated_SNPs_2709 0 0 0 0 2 CST6 chr11:65780297 3'AG 65780297 Downstream 33bp 2662 chr11 65780329 65780329 1 + G A SKCM 65780329 + 65780309 65780349 41 ATCAAGTACTTCCTGACGATGGAGATGGGGAGCACAGACTG ATCAAGTACTTCCTGACGATAGAGATGGGGAGCACAGACTG Direct Loss 0.955279741798657 0 NA NA prediction 0.910559483597313 Functional Loss - CST6 ENSG00000175315 CDS Human protein_coding chr11:65780329 chr11:65780329 nonsynonymous SNV 0.003 0 21 hm7G_associated_SNPs_2709 0 0 0 0 2 CST6 chr11:65780422 5'GT 65780422 Upstream 94bp 2663 chr2 27669181 27669181 1 + G C UCEC 27669181 + 27669161 27669201 41 TCTACAGGTAGTAGCTGGGTGTGACGCAAGAGTGAAACAGA TCTACAGGTAGTAGCTGGGTCTGACGCAAGAGTGAAACAGA Direct Loss 0.955266219448988 0 NA NA prediction 0.910532438897977 Functional Loss - IFT172 ENSG00000138002 CDS Human protein_coding chr2:27669181 chr2:27669181 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2710 0 0 0 0 1 IFT172 chr2:27669168 3'AG 27669168 Downstream 14bp 2664 chr5 172581411 172581411 1 + G T LUAD 172581411 + 172581391 172581431 41 GAGAATCACAAAAAGCAGATGCTCAGGTAGGCAGGGCCTGC GAGAATCACAAAAAGCAGATTCTCAGGTAGGCAGGGCCTGC Direct Loss 0.955264640664094 0 NA NA prediction 0.910529281328187 Functional Loss - BNIP1 ENSG00000113734 CDS Human protein_coding chr5:172581411 chr5:172581411 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2711 0 0 0 0 2 BNIP1 chr5:172581325 3'AG 172581325 Downstream 87bp 2665 chr5 172581411 172581411 1 + G T LUAD 172581411 + 172581391 172581431 41 GAGAATCACAAAAAGCAGATGCTCAGGTAGGCAGGGCCTGC GAGAATCACAAAAAGCAGATTCTCAGGTAGGCAGGGCCTGC Direct Loss 0.955264640664094 0 NA NA prediction 0.910529281328187 Functional Loss - BNIP1 ENSG00000113734 CDS Human protein_coding chr5:172581411 chr5:172581411 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2711 0 0 0 0 2 BNIP1 chr5:172581416 5'GT 172581416 Upstream 6bp 2666 chr12 120650200 120650200 1 + G T UCEC 120650200 + 120650180 120650220 41 GCCCTTGTTGAGCTGCTTGAGGCAGAAGGCACAGACGAAGT GCCCTTGTTGAGCTGCTTGATGCAGAAGGCACAGACGAAGT Direct Loss 0.95526101042392 0 NA NA prediction 0.91052202084784 Functional Loss - PXN ENSG00000089159 CDS Human protein_coding chr12:120650200 chr12:120650200 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2712 0 0 0 0 1 PXN chr12:120650178 3'AG 120650178 Downstream 23bp 2667 chr17 79674211 79674211 1 + G A HNSC 79674211 + 79674191 79674231 41 AAGCCAATGTCGCCAAAGCTGAGGCGGAGAAGATCAAGGCG AAGCCAATGTCGCCAAAGCTAAGGCGGAGAAGATCAAGGCG Direct Loss 0.955246740280086 0 NA NA prediction 0.910493480560172 Functional Loss - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79674211 chr17:79674211 nonsynonymous SNV 0.723 3 21 hm7G_associated_SNPs_2713 0 0 1 0 2 MRPL12 chr17:79674154 3'AG 79674154 Downstream 58bp 2668 chr17 79674211 79674211 1 + G A HNSC 79674211 + 79674191 79674231 41 AAGCCAATGTCGCCAAAGCTGAGGCGGAGAAGATCAAGGCG AAGCCAATGTCGCCAAAGCTAAGGCGGAGAAGATCAAGGCG Direct Loss 0.955246740280086 0 NA NA prediction 0.910493480560172 Functional Loss - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79674211 chr17:79674211 nonsynonymous SNV 0.723 3 21 hm7G_associated_SNPs_2713 0 0 1 0 2 MRPL12 chr17:79674243 5'GT 79674243 Upstream 33bp 2669 chr5 161117321 161117321 1 + G A SKCM 161117321 + 161117301 161117341 41 TCTTTCCCAGGTGTCTTTCTGGATTAATAAGGAGTCCGTCC TCTTTCCCAGGTGTCTTTCTAGATTAATAAGGAGTCCGTCC Direct Loss 0.955242535838183 0 NA NA prediction 0.910485071676365 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161117321 chr5:161117321 stopgain 1.000 1 21 hm7G_associated_SNPs_2715 0 0 0 0 1 GABRA6 chr5:161117359 5'GT 161117359 Upstream 39bp 2670 chr19 11559946 11559946 1 + G A HNSC 11559946 + 11559926 11559966 41 AGTTCAGTGCCATGAAGTATGAGCAAGGCACGGGCTGCTGG AGTTCAGTGCCATGAAGTATAAGCAAGGCACGGGCTGCTGG Direct Loss 0.955231896166342 0 NA NA prediction 0.910463792332683 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559946 chr19:11559946 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_2716 0 0 1 0 2 PRKCSH chr19:11559891 3'AG 11559891 Downstream 56bp 2671 chr19 11559946 11559946 1 + G A HNSC 11559946 + 11559926 11559966 41 AGTTCAGTGCCATGAAGTATGAGCAAGGCACGGGCTGCTGG AGTTCAGTGCCATGAAGTATAAGCAAGGCACGGGCTGCTGG Direct Loss 0.955231896166342 0 NA NA prediction 0.910463792332683 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559946 chr19:11559946 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_2716 0 0 1 0 2 PRKCSH chr19:11559990 5'GT 11559990 Upstream 45bp 2672 chrX 12837716 12837716 1 + G A LUSC 12837716 + 12837696 12837736 41 GAAGTGGACCGGATGGTCCTGGTGGGCGACGTGAAGGACCG GAAGTGGACCGGATGGTCCTAGTGGGCGACGTGAAGGACCG Direct Loss 0.955229083436553 0 NA NA prediction 0.910458166873106 Functional Loss - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12837716 chrX:12837716 synonymous SNV . 0 21 hm7G_associated_SNPs_2717 0 0 0 0 1 PRPS2 chrX:12837799 5'GT 12837799 Upstream 84bp 2673 chr10 102893963 102893963 1 + G A rs7090185 102893963 + 102893943 102893983 41 CAGAACCGGACGCCCCCCAAGAAGAAGAAGCCGCGCACGTC CAGAACCGGACGCCCCCCAAAAAGAAGAAGCCGCGCACGTC Direct Loss 0.955211944412908 0 NA NA prediction 0.910423888825815 Functional Loss - TLX1 ENSG00000107807 CDS Human protein_coding chr10:102893963 chr10:102893963 synonymous SNV . 0 21 hm7G_associated_SNPs_2718 0 0 0 0 1 TLX1 chr10:102893932 3'AG 102893932 Downstream 32bp 2674 chr14 23945268 23945268 1 + G A HNSC 23945268 + 23945248 23945288 41 AGGATGAGGAGGAAGATGAAGCAGAAGATGACCAGTCTGAG AGGATGAGGAGGAAGATGAAACAGAAGATGACCAGTCTGAG Direct Loss 0.955201775472552 0 NA NA prediction 0.910403550945104 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23945268 chr14:23945268 nonsynonymous SNV 0.300 0 21 hm7G_associated_SNPs_2719 0 0 1 0 2 NGDN chr14:23945238 3'AG 23945238 Downstream 31bp 2675 chr14 23945268 23945268 1 + G A HNSC 23945268 + 23945248 23945288 41 AGGATGAGGAGGAAGATGAAGCAGAAGATGACCAGTCTGAG AGGATGAGGAGGAAGATGAAACAGAAGATGACCAGTCTGAG Direct Loss 0.955201775472552 0 NA NA prediction 0.910403550945104 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23945268 chr14:23945268 nonsynonymous SNV 0.300 0 21 hm7G_associated_SNPs_2719 0 0 1 0 2 NGDN chr14:23945361 5'GT 23945361 Upstream 94bp 2676 chr5 156898710 156898710 1 + G T LUAD 156898710 + 156898690 156898730 41 AGGGAGAGTCTGAACCTGCTGGGGAAGCTGGGCTGTGTGAT AGGGAGAGTCTGAACCTGCTTGGGAAGCTGGGCTGTGTGAT Direct Loss 0.955192500901433 0 NA NA prediction 0.910385001802867 Functional Loss - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156898710 chr5:156898710 synonymous SNV . 0 21 hm7G_associated_SNPs_2720 0 0 0 0 1 NIPAL4 chr5:156898665 3'AG 156898665 Downstream 46bp 2677 chr19 57743473 57743473 1 + G A SKCM 57743473 + 57743453 57743493 41 AAATTTGGGAATGTGTACCTGGCTCGGCTCAAGGAAAGCCA AAATTTGGGAATGTGTACCTAGCTCGGCTCAAGGAAAGCCA Direct Loss 0.955178559999592 0 NA NA prediction 0.910357119999184 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743473 chr19:57743473 synonymous SNV . 0 21 hm7G_associated_SNPs_2721 0 0 0 0 1 AURKC chr19:57743401 3'AG 57743401 Downstream 73bp 2678 chr1 36557223 36557223 1 + G A UCEC 36557223 + 36557203 36557243 41 CCCTTCTGTTCCCTAGATTTGCTCAGGAGTACAAGAAAGAC CCCTTCTGTTCCCTAGATTTACTCAGGAGTACAAGAAAGAC Direct Loss 0.95514011789195 0 NA NA prediction 0.9102802357839 Functional Loss - ADPRHL2 ENSG00000116863 CDS Human protein_coding chr1:36557223 chr1:36557223 nonsynonymous SNV 0.987 1 21 hm7G_associated_SNPs_2722 0 0 1 0 1 ADPRHL2 chr1:36557219 3'AG 36557219 Downstream 5bp 2679 chr7 99912223 99912223 1 + G A SKCM 99912223 + 99912203 99912243 41 GGAAGAGGGAGTGTTTGGATGAATCTGATGATGAGCCAGAG GGAAGAGGGAGTGTTTGGATAAATCTGATGATGAGCCAGAG Direct Loss 0.95513216799218 0 NA NA prediction 0.910264335984361 Functional Loss - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99912223 chr7:99912223 nonsynonymous SNV . 1 21 hm7G_associated_SNPs_2723 0 0 0 0 1 SPDYE3 chr7:99912155 3'AG 99912155 Downstream 69bp 2680 chr9 104307056 104307056 1 + G C LUSC 104307056 + 104307036 104307076 41 TCTTCTTCCCCAGATAATCTGATAGTGGAGGAAGCAGTGCA TCTTCTTCCCCAGATAATCTCATAGTGGAGGAAGCAGTGCA Direct Loss 0.955128982130297 0 NA NA prediction 0.910257964260594 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307056 chr9:104307056 synonymous SNV . 0 21 hm7G_associated_SNPs_2724 0 0 0 0 1 RNF20 chr9:104307049 3'AG 104307049 Downstream 8bp 2681 chr2 68385178 68385178 1 + G A UCEC 68385178 + 68385158 68385198 41 AGGCTGAACAGCTGTCCGCAGCAGGAGAGGGCGGGGATGCG AGGCTGAACAGCTGTCCGCAACAGGAGAGGGCGGGGATGCG Direct Loss 0.955105612042984 0 NA NA prediction 0.910211224085969 Functional Loss - PNO1 ENSG00000115946;ENSG00000273398 CDS Human protein_coding chr2:68385178 chr2:68385178 nonsynonymous SNV 0.018 0 21 hm7G_associated_SNPs_2725 0 0 1 0 1 PNO1 chr2:68385273 5'GT 68385273 Upstream 96bp 2682 chr1 52878207 52878207 1 + G T SARC 52878207 + 52878187 52878227 41 AACGCTATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGA AACGCTATGTATTAGAGGAATCTGAGCAACTGGAGCCTCGA Direct Loss 0.955100899160923 0 NA NA prediction 0.910201798321847 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52878207 chr1:52878207 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2726 0 0 1 0 2 PRPF38A chr1:52878186 3'AG 52878186 Downstream 22bp 2683 chr1 52878207 52878207 1 + G T SARC 52878207 + 52878187 52878227 41 AACGCTATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGA AACGCTATGTATTAGAGGAATCTGAGCAACTGGAGCCTCGA Direct Loss 0.955100899160923 0 NA NA prediction 0.910201798321847 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52878207 chr1:52878207 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2726 0 0 1 0 2 PRPF38A chr1:52878296 5'GT 52878296 Upstream 90bp 2684 chr19 3733831 3733831 1 + G A rs34564453 3733831 + 3733811 3733851 41 TCAGAAGGGAAGCTAAGCCTGCTGGTGCTGAGAGATCGTGG TCAGAAGGGAAGCTAAGCCTACTGGTGCTGAGAGATCGTGG Direct Loss 0.955095703187785 0 NA NA prediction 0.910191406375569 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3733831 chr19:3733831 synonymous SNV . 0 21 hm7G_associated_SNPs_2727 0 0 0 0 1 TJP3 chr19:3733751 3'AG 3733751 Downstream 81bp 2685 chr1 154245849 154245849 1 + G A LUSC 154245849 + 154245829 154245869 41 TTGGAGGGATGACTCGAGATGAAGATGATGATGAGGAAGAA TTGGAGGGATGACTCGAGATAAAGATGATGATGAGGAAGAA Direct Loss 0.95505597921288 0 NA NA prediction 0.91011195842576 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154245849 chr1:154245849 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_2729 0 0 1 0 1 HAX1 chr1:154245812 3'AG 154245812 Downstream 38bp 2686 chr21 33039599 33039599 1 + G A UCEC 33039599 + 33039579 33039619 41 GAGACTTGGGCAATGTGACTGCTGACAAAGATGGTGTGGCC GAGACTTGGGCAATGTGACTACTGACAAAGATGGTGTGGCC Direct Loss 0.955045686401449 0 NA NA prediction 0.910091372802897 Functional Loss - SOD1 ENSG00000142168 CDS Human protein_coding chr21:33039599 chr21:33039599 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_2730 0 0 1 1 2 SOD1 chr21:33039571 3'AG 33039571 Downstream 29bp 2687 chr21 33039599 33039599 1 + G A UCEC 33039599 + 33039579 33039619 41 GAGACTTGGGCAATGTGACTGCTGACAAAGATGGTGTGGCC GAGACTTGGGCAATGTGACTACTGACAAAGATGGTGTGGCC Direct Loss 0.955045686401449 0 NA NA prediction 0.910091372802897 Functional Loss - SOD1 ENSG00000142168 CDS Human protein_coding chr21:33039599 chr21:33039599 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_2730 0 0 1 1 2 SOD1 chr21:33039688 5'GT 33039688 Upstream 90bp 2688 chr7 75689816 75689816 1 + G A rs142812282 75689816 + 75689796 75689836 41 ACCTTTGTTGCAGAGCTGAAGGTAAGGGCGGCGTGGGTGTT ACCTTTGTTGCAGAGCTGAAAGTAAGGGCGGCGTGGGTGTT Direct Loss 0.955043606662745 0 NA NA prediction 0.91008721332549 Functional Loss - MDH2 ENSG00000146701 CDS Human protein_coding chr7:75689816 chr7:75689816 synonymous SNV . 0 21 hm7G_associated_SNPs_2731 0 0 1 0 1 MDH2 chr7:75689816 5'GT 75689816 Upstream 1bp 2689 chr2 242650848 242650848 1 + G A LUAD 242650848 + 242650828 242650868 41 GCGCGCTTTGAAGCAGATCTGAAGGACAAGATGGAGGGCAG GCGCGCTTTGAAGCAGATCTAAAGGACAAGATGGAGGGCAG Direct Loss 0.955037439444237 0 NA NA prediction 0.910074878888474 Functional Loss - ING5 ENSG00000168395 CDS Human protein_coding chr2:242650848 chr2:242650848 synonymous SNV . 0 21 hm7G_associated_SNPs_2732 0 0 1 0 1 ING5 chr2:242650792 3'AG 242650792 Downstream 57bp 2690 chr6 3850105 3850105 1 + G T SARC 3850105 + 3850085 3850125 41 GCCATGCACCTCCTCAAGAAGCGCGAAAGGCAGCGGGAGCA GCCATGCACCTCCTCAAGAATCGCGAAAGGCAGCGGGAGCA Direct Loss 0.955028814841954 0 NA NA prediction 0.910057629683908 Functional Loss - FAM50B ENSG00000145945 CDS Human sense_overlapping chr6:3850105 chr6:3850105 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_2735 0 0 0 0 1 FAM50B chr6:3850023 3'AG 3850023 Downstream 83bp 2691 chr16 5038194 5038194 1 + G A PRAD 5038194 + 5038174 5038214 41 TTCGTGCAGACAAACATCTTGAACTGGAAGGAGAGGACGCT TTCGTGCAGACAAACATCTTAAACTGGAAGGAGAGGACGCT Direct Loss 0.955017989805903 0 NA NA prediction 0.910035979611807 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5038194 chr16:5038194 synonymous SNV . 0 21 hm7G_associated_SNPs_2736 0 0 0 0 2 SEC14L5 chr16:5038150 3'AG 5038150 Downstream 45bp 2692 chr16 5038194 5038194 1 + G A PRAD 5038194 + 5038174 5038214 41 TTCGTGCAGACAAACATCTTGAACTGGAAGGAGAGGACGCT TTCGTGCAGACAAACATCTTAAACTGGAAGGAGAGGACGCT Direct Loss 0.955017989805903 0 NA NA prediction 0.910035979611807 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5038194 chr16:5038194 synonymous SNV . 0 21 hm7G_associated_SNPs_2736 0 0 0 0 2 SEC14L5 chr16:5038281 5'GT 5038281 Upstream 88bp 2693 chr5 162943714 162943714 1 + G A UCEC 162943714 + 162943694 162943734 41 CAGCTAGCAGAGAAGAGAATGCTGGTAAGAAGGATTCCTGA CAGCTAGCAGAGAAGAGAATACTGGTAAGAAGGATTCCTGA Direct Loss 0.955007919129269 0 NA NA prediction 0.910015838258539 Functional Loss - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162943714 chr5:162943714 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2738 0 0 1 0 1 MAT2B chr5:162943717 5'GT 162943717 Upstream 4bp 2694 chr2 37475346 37475346 1 + G A BLCA 37475346 + 37475326 37475366 41 CAAGGATATGATATGTTAATGAATCCAAAGAAGATGGGAGA CAAGGATATGATATGTTAATAAATCCAAAGAAGATGGGAGA Direct Loss 0.95499395684926 0 NA NA prediction 0.909987913698521 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475346 chr2:37475346 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2740 0 0 1 2 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 69bp 2695 chr15 75122558 75122558 1 + G A SKCM 75122558 + 75122538 75122578 41 AGATGATCGAGGAGGACACAGAGGAGGAGGAGGAGAAGGCC AGATGATCGAGGAGGACACAAAGGAGGAGGAGGAGAAGGCC Direct Loss 0.95497633531496 0 NA NA prediction 0.90995267062992 Functional Loss - CPLX3 ENSG00000213578 CDS Human protein_coding chr15:75122558 chr15:75122558 nonsynonymous SNV 0.990 0 21 hm7G_associated_SNPs_2742 0 0 0 0 1 CPLX3 chr15:75122471 3'AG 75122471 Downstream 88bp 2696 chr12 96360210 96360210 1 + G A UCEC 96360210 + 96360190 96360230 41 CCACCATCAATGCAGCTTATGCACTGGGAAAGTCTCACACA CCACCATCAATGCAGCTTATACACTGGGAAAGTCTCACACA Direct Loss 0.954962229201647 0 NA NA prediction 0.909924458403294 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96360210 chr12:96360210 nonsynonymous SNV 0.980 4 21 hm7G_associated_SNPs_2743 0 0 0 0 2 AMDHD1 chr12:96360126 3'AG 96360126 Downstream 85bp 2697 chr12 96360210 96360210 1 + G A UCEC 96360210 + 96360190 96360230 41 CCACCATCAATGCAGCTTATGCACTGGGAAAGTCTCACACA CCACCATCAATGCAGCTTATACACTGGGAAAGTCTCACACA Direct Loss 0.954962229201647 0 NA NA prediction 0.909924458403294 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96360210 chr12:96360210 nonsynonymous SNV 0.980 4 21 hm7G_associated_SNPs_2743 0 0 0 0 2 AMDHD1 chr12:96360286 5'GT 96360286 Upstream 77bp 2698 chr19 4954417 4954417 1 + G A UCEC 4954417 + 4954397 4954437 41 AGAGCGAGAGAAGGAGAACAGCAAGAGGGAGGAGGAGGAGC AGAGCGAGAGAAGGAGAACAACAAGAGGGAGGAGGAGGAGC Direct Loss 0.954953517589561 0 NA NA prediction 0.909907035179123 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954417 chr19:4954417 . 0.012 0 21 hm7G_associated_SNPs_2745 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 56bp 2699 chr19 4954417 4954417 1 + G A UCEC 4954417 + 4954397 4954437 41 AGAGCGAGAGAAGGAGAACAGCAAGAGGGAGGAGGAGGAGC AGAGCGAGAGAAGGAGAACAACAAGAGGGAGGAGGAGGAGC Direct Loss 0.954953517589561 0 NA NA prediction 0.909907035179123 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954417 chr19:4954417 . 0.012 0 21 hm7G_associated_SNPs_2745 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 84bp 2700 chr1 151239669 151239669 1 + G C BLCA 151239669 + 151239649 151239689 41 GAGGAGGATGATTACGACGTGATGCAGGACCCCGAGTTCCT GAGGAGGATGATTACGACGTCATGCAGGACCCCGAGTTCCT Direct Loss 0.95495291871428 0 NA NA prediction 0.909905837428561 Functional Loss - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151239669 chr1:151239669 synonymous SNV . 0 21 hm7G_associated_SNPs_2746 0 0 1 0 1 PSMD4 chr1:151239649 3'AG 151239649 Downstream 21bp 2701 chr19 45561081 45561081 1 + G A SARC 45561081 + 45561061 45561101 41 CCAAGGTAGAGAAGGCGGCAGAAAAGCCAGAGGAGGAGGAG CCAAGGTAGAGAAGGCGGCAAAAAAGCCAGAGGAGGAGGAG Direct Loss 0.954933934864823 0 NA NA prediction 0.909867869729647 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561081 chr19:45561081 nonsynonymous SNV 0.593 0 21 hm7G_associated_SNPs_2748 0 0 1 0 3 CLASRP chr19:45561008 3'AG 45561008 Downstream 74bp 2702 chr19 45561081 45561081 1 + G A SARC 45561081 + 45561061 45561101 41 CCAAGGTAGAGAAGGCGGCAGAAAAGCCAGAGGAGGAGGAG CCAAGGTAGAGAAGGCGGCAAAAAAGCCAGAGGAGGAGGAG Direct Loss 0.954933934864823 0 NA NA prediction 0.909867869729647 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561081 chr19:45561081 nonsynonymous SNV 0.593 0 21 hm7G_associated_SNPs_2748 0 0 1 0 3 CLASRP chr19:45561140 5'GT 45561140 Upstream 60bp 2703 chr19 45561081 45561081 1 + G A SARC 45561081 + 45561061 45561101 41 CCAAGGTAGAGAAGGCGGCAGAAAAGCCAGAGGAGGAGGAG CCAAGGTAGAGAAGGCGGCAAAAAAGCCAGAGGAGGAGGAG Direct Loss 0.954933934864823 0 NA NA prediction 0.909867869729647 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561081 chr19:45561081 nonsynonymous SNV 0.593 0 21 hm7G_associated_SNPs_2748 0 0 1 0 3 CLASRP chr19:45561156 5'GT 45561156 Upstream 76bp 2704 chr17 4684105 4684105 1 + G T SARC 4684105 + 4684085 4684125 41 TACTGTGTCCGGGGATTGCAGCCGTTCGGGCAGGGGGCAAG TACTGTGTCCGGGGATTGCATCCGTTCGGGCAGGGGGCAAG Direct Loss 0.954932987510157 0 NA NA prediction 0.909865975020314 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4684105 chr17:4684105 nonsynonymous SNV 0.061 4 21 hm7G_associated_SNPs_2749 0 0 1 0 1 TM4SF5 chr17:4684084 3'AG 4684084 Downstream 22bp 2705 chr2 74717217 74717217 1 + G A UCEC 74717217 + 74717197 74717237 41 GGCCTGCACCGGATCCATGTGGATGGGAGCAGCGGGCGGCT GGCCTGCACCGGATCCATGTAGATGGGAGCAGCGGGCGGCT Direct Loss 0.954910390621948 0 NA NA prediction 0.909820781243896 Functional Loss - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74717217 chr2:74717217 synonymous SNV . 0 21 hm7G_associated_SNPs_2751 0 0 1 0 2 TTC31 chr2:74717152 3'AG 74717152 Downstream 66bp 2706 chr2 74717217 74717217 1 + G A UCEC 74717217 + 74717197 74717237 41 GGCCTGCACCGGATCCATGTGGATGGGAGCAGCGGGCGGCT GGCCTGCACCGGATCCATGTAGATGGGAGCAGCGGGCGGCT Direct Loss 0.954910390621948 0 NA NA prediction 0.909820781243896 Functional Loss - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74717217 chr2:74717217 synonymous SNV . 0 21 hm7G_associated_SNPs_2751 0 0 1 0 2 TTC31 chr2:74717254 5'GT 74717254 Upstream 38bp 2707 chrX 2945371 2945371 1 + G C LUAD 2945371 + 2945351 2945391 41 TAGGTGGCAAAGGAATGGGAGGATGGGAAGGAGGTATCCGT TAGGTGGCAAAGGAATGGGACGATGGGAAGGAGGTATCCGT Direct Loss 0.954893782671361 0 NA NA prediction 0.909787565342721 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2945371 chrX:2945371 nonsynonymous SNV 0.982 4 21 hm7G_associated_SNPs_2754 0 0 0 0 1 ARSH chrX:2945354 3'AG 2945354 Downstream 18bp 2708 chr14 24706288 24706288 1 + G T LIHC 24706288 + 24706268 24706308 41 CTGTCTCAGGCAGGGAATGTGGTAACAGGAGAGATGGTAGA CTGTCTCAGGCAGGGAATGTTGTAACAGGAGAGATGGTAGA Direct Loss 0.954891207395516 0 NA NA prediction 0.909782414791032 Functional Loss - GMPR2 ENSG00000100938 CDS Human protein_coding chr14:24706288 chr14:24706288 synonymous SNV . 0 21 hm7G_associated_SNPs_2756 0 0 1 0 3 GMPR2 chr14:24706248 3'AG 24706248 Downstream 41bp 2709 chr14 24706288 24706288 1 + G T LIHC 24706288 + 24706268 24706308 41 CTGTCTCAGGCAGGGAATGTGGTAACAGGAGAGATGGTAGA CTGTCTCAGGCAGGGAATGTTGTAACAGGAGAGATGGTAGA Direct Loss 0.954891207395516 0 NA NA prediction 0.909782414791032 Functional Loss - GMPR2 ENSG00000100938 CDS Human protein_coding chr14:24706288 chr14:24706288 synonymous SNV . 0 21 hm7G_associated_SNPs_2756 0 0 1 0 3 GMPR2 chr14:24706277 3'AG 24706277 Downstream 12bp 2710 chr14 24706288 24706288 1 + G T LIHC 24706288 + 24706268 24706308 41 CTGTCTCAGGCAGGGAATGTGGTAACAGGAGAGATGGTAGA CTGTCTCAGGCAGGGAATGTTGTAACAGGAGAGATGGTAGA Direct Loss 0.954891207395516 0 NA NA prediction 0.909782414791032 Functional Loss - GMPR2 ENSG00000100938 CDS Human protein_coding chr14:24706288 chr14:24706288 synonymous SNV . 0 21 hm7G_associated_SNPs_2756 0 0 1 0 3 GMPR2 chr14:24706358 5'GT 24706358 Upstream 71bp 2711 chr8 125555397 125555397 1 + G A HNSC 125555397 + 125555377 125555417 41 CATAAGAATGAAAAGGATATGGCGAAGGCCACCCAGCTGCT CATAAGAATGAAAAGGATATAGCGAAGGCCACCCAGCTGCT Direct Loss 0.954885467619773 0 NA NA prediction 0.909770935239546 Functional Loss - NDUFB9 ENSG00000147684 CDS Human protein_coding chr8:125555397 chr8:125555397 nonsynonymous SNV 0.941 1 21 hm7G_associated_SNPs_2758 0 0 1 0 1 NDUFB9;NDUFB9 chr8:125555328 3'AG 125555328 Downstream 70bp 2712 chr5 78423758 78423758 1 + G A STAD 78423758 + 78423738 78423778 41 AGCTTCAGAAAAACATGGCAGCTGGGGAAGTGGTTTGGACA AGCTTCAGAAAAACATGGCAACTGGGGAAGTGGTTTGGACA Direct Loss 0.954872522149999 0 NA NA prediction 0.909745044299998 Functional Loss - BHMT ENSG00000145692 CDS Human protein_coding chr5:78423758 chr5:78423758 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2760 0 0 0 0 1 BHMT chr5:78423806 5'GT 78423806 Upstream 49bp 2713 chrX 118604382 118604382 1 + G A BLCA 118604382 + 118604362 118604402 41 CACATCGTCATCAGCTGGATGATCGCACAGACTGTCACTGC CACATCGTCATCAGCTGGATAATCGCACAGACTGTCACTGC Direct Loss 0.954834182827222 0 NA NA prediction 0.909668365654444 Functional Loss - SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118604382 chrX:118604382 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_2761 0 0 1 0 2 SLC25A5 chrX:118604336 3'AG 118604336 Downstream 47bp 2714 chrX 118604382 118604382 1 + G A BLCA 118604382 + 118604362 118604402 41 CACATCGTCATCAGCTGGATGATCGCACAGACTGTCACTGC CACATCGTCATCAGCTGGATAATCGCACAGACTGTCACTGC Direct Loss 0.954834182827222 0 NA NA prediction 0.909668365654444 Functional Loss - SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118604382 chrX:118604382 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_2761 0 0 1 0 2 SLC25A5 chrX:118604476 5'GT 118604476 Upstream 95bp 2715 chr4 55602936 55602936 1 + G A LUSC 55602936 + 55602916 55602956 41 GATTCTAAGTTCTACAAGATGATCAAGGAAGGCTTCCGGAT GATTCTAAGTTCTACAAGATAATCAAGGAAGGCTTCCGGAT Direct Loss 0.954825659353918 0 NA NA prediction 0.909651318707835 Functional Loss - KIT ENSG00000157404 CDS Human protein_coding chr4:55602936 chr4:55602936 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2762 0 0 0 0 2 KIT chr4:55602887 3'AG 55602887 Downstream 50bp 2716 chr4 55602936 55602936 1 + G A LUSC 55602936 + 55602916 55602956 41 GATTCTAAGTTCTACAAGATGATCAAGGAAGGCTTCCGGAT GATTCTAAGTTCTACAAGATAATCAAGGAAGGCTTCCGGAT Direct Loss 0.954825659353918 0 NA NA prediction 0.909651318707835 Functional Loss - KIT ENSG00000157404 CDS Human protein_coding chr4:55602936 chr4:55602936 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2762 0 0 0 0 2 KIT chr4:55602986 5'GT 55602986 Upstream 51bp 2717 chr16 29811305 29811305 1 + G A HNSC 29811305 + 29811285 29811325 41 CAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGGGAGC CAAAGAGAGCCCGAGGCCCTAAGGAAGAGGAGATCGGGAGC Direct Loss 0.954810436145797 0 NA NA prediction 0.909620872291594 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811305 chr16:29811305 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_2765 0 0 1 0 2 KIF22 chr16:29811234 3'AG 29811234 Downstream 72bp 2718 chr16 29811305 29811305 1 + G A HNSC 29811305 + 29811285 29811325 41 CAAAGAGAGCCCGAGGCCCTGAGGAAGAGGAGATCGGGAGC CAAAGAGAGCCCGAGGCCCTAAGGAAGAGGAGATCGGGAGC Direct Loss 0.954810436145797 0 NA NA prediction 0.909620872291594 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29811305 chr16:29811305 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_2765 0 0 1 0 2 KIF22 chr16:29811369 5'GT 29811369 Upstream 65bp 2719 chr7 54617593 54617593 1 + G A SKCM 54617593 + 54617573 54617613 41 CCAAAGTGAGGAAAAAGGATGAAGGCTTATATGAGTGCAGG CCAAAGTGAGGAAAAAGGATAAAGGCTTATATGAGTGCAGG Direct Loss 0.954744905578429 0 NA NA prediction 0.909489811156859 Functional Loss - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54617593 chr7:54617593 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_2770 0 0 0 0 1 VSTM2A chr7:54617527 3'AG 54617527 Downstream 67bp 2720 chr1 45243437 45243437 1 + G T OV 45243437 + 45243417 45243457 41 TCCCACTATGCGCTGCCCCTGGGCCGCAAGAAGGGAGCCAA TCCCACTATGCGCTGCCCCTTGGCCGCAAGAAGGGAGCCAA Direct Loss 0.954738533221146 0 NA NA prediction 0.909477066442293 Functional Loss - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243437 chr1:45243437 synonymous SNV . 0 21 hm7G_associated_SNPs_2771 0 0 1 0 1 RPS8 chr1:45243461 5'GT 45243461 Upstream 25bp 2721 chr1 178489512 178489512 1 + G A UCEC 178489512 + 178489492 178489532 41 AATTCTCTCTCGAAGGAAATGCAGAAAGATATGGATGAGAA AATTCTCTCTCGAAGGAAATACAGAAAGATATGGATGAGAA Direct Loss 0.954702294352216 0 NA NA prediction 0.909404588704431 Functional Loss - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178489512 chr1:178489512 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2773 0 0 0 0 2 TEX35 chr1:178489507 3'AG 178489507 Downstream 6bp 2722 chr1 178489512 178489512 1 + G A UCEC 178489512 + 178489492 178489532 41 AATTCTCTCTCGAAGGAAATGCAGAAAGATATGGATGAGAA AATTCTCTCTCGAAGGAAATACAGAAAGATATGGATGAGAA Direct Loss 0.954702294352216 0 NA NA prediction 0.909404588704431 Functional Loss - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178489512 chr1:178489512 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2773 0 0 0 0 2 TEX35 chr1:178489571 5'GT 178489571 Upstream 60bp 2723 chr12 112891129 112891129 1 + G A COAD 112891129 + 112891109 112891149 41 TTCTTTCTGTGCGCACTGGTGATGACAAAGGGGAGAGCAAT TTCTTTCTGTGCGCACTGGTAATGACAAAGGGGAGAGCAAT Direct Loss 0.954696535430965 0 NA NA prediction 0.90939307086193 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112891129 chr12:112891129 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_2774 0 0 1 0 1 PTPN11 chr12:112891191 5'GT 112891191 Upstream 63bp 2724 chr16 28975070 28975070 1 + G T LUAD 28975070 + 28975050 28975090 41 TCCCACTATGAGGAGGCCATGGGACTGTCGGGACGGAAGCT TCCCACTATGAGGAGGCCATTGGACTGTCGGGACGGAAGCT Direct Loss 0.954692867887728 0 NA NA prediction 0.909385735775456 Functional Loss - NFATC2IP ENSG00000176953 CDS Human protein_coding chr16:28975070 chr16:28975070 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2775 0 0 1 0 1 NFATC2IP chr16:28975026 3'AG 28975026 Downstream 45bp 2725 chr13 32332508 32332508 1 + G T OV 32332508 + 32332488 32332528 41 TTCACTGTGATGGCAAGGATGACTGTGGGAACGGGGCGGAC TTCACTGTGATGGCAAGGATTACTGTGGGAACGGGGCGGAC Direct Loss 0.954691838118945 0 NA NA prediction 0.90938367623789 Functional Loss - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32332508 chr13:32332508 nonsynonymous SNV 0.930 5 21 hm7G_associated_SNPs_2776 0 0 0 0 1 RXFP2 chr13:32332541 5'GT 32332541 Upstream 34bp 2726 chr11 70052283 70052283 1 + G C COAD 70052283 + 70052263 70052303 41 TATGTGATAATGTGGGGAAAGATTGGAGAAGGCTGGCTCGT TATGTGATAATGTGGGGAAACATTGGAGAAGGCTGGCTCGT Direct Loss 0.954666466510751 0 NA NA prediction 0.909332933021503 Functional Loss - FADD ENSG00000168040 CDS Human protein_coding chr11:70052283 chr11:70052283 nonsynonymous SNV 0.036 4 21 hm7G_associated_SNPs_2778 0 0 1 0 1 FADD chr11:70052239 3'AG 70052239 Downstream 45bp 2727 chr1 84880268 84880268 1 + G A LUSC 84880268 + 84880248 84880288 41 ACACTTGTTAACAGAAACCTGGCAGCGAAAAAGACAAGAGC ACACTTGTTAACAGAAACCTAGCAGCGAAAAAGACAAGAGC Direct Loss 0.954646297720268 0 NA NA prediction 0.909292595440536 Functional Loss - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84880268 chr1:84880268 stopgain 0.996 1 21 hm7G_associated_SNPs_2779 0 0 0 0 1 DNASE2B chr1:84880211 3'AG 84880211 Downstream 58bp 2728 chr10 103908981 103908981 1 + G A COAD 103908981 + 103908961 103909001 41 GCTATGCTGAGGAGGCATTTGCAGCCATTGAGAGTGGCCAC GCTATGCTGAGGAGGCATTTACAGCCATTGAGAGTGGCCAC Direct Loss 0.954644301960059 0 NA NA prediction 0.909288603920118 Functional Loss - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103908981 chr10:103908981 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2780 0 0 1 0 1 PPRC1 chr10:103908935 3'AG 103908935 Downstream 47bp 2729 chr18 61232681 61232681 1 + G A SKCM 61232681 + 61232661 61232701 41 TACCTTGACTACTACAGAATGAAAACAAGAGTGTGAAGATG TACCTTGACTACTACAGAATAAAAACAAGAGTGTGAAGATG Direct Loss 0.954597168094634 0 NA NA prediction 0.909194336189268 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61232681 chr18:61232681 nonsynonymous SNV 0.981 3 21 hm7G_associated_SNPs_2781 0 0 0 0 1 SERPINB12 chr18:61232678 3'AG 61232678 Downstream 4bp 2730 chr8 145533181 145533181 1 + G A rs199606239 145533181 + 145533161 145533201 41 CACATCGAGCAGGGCGGCCTGGTCAAGCCAGAGAGAGACGA CACATCGAGCAGGGCGGCCTAGTCAAGCCAGAGAGAGACGA Direct Loss 0.954577100571723 0 NA NA prediction 0.909154201143447 Functional Loss - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145533181 chr8:145533181 synonymous SNV . 0 21 hm7G_associated_SNPs_2783 0 0 1 0 1 HSF1 chr8:145533141 3'AG 145533141 Downstream 41bp 2731 chr13 25433214 25433214 1 + G A SKCM 25433214 + 25433194 25433234 41 TCTTTTGGAGCCTTATTTCTGGAAAAAAGGAGAAGCATGTG TCTTTTGGAGCCTTATTTCTAGAAAAAAGGAGAAGCATGTG Direct Loss 0.954559079514618 0 NA NA prediction 0.909118159029235 Functional Loss - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25433214 chr13:25433214 stopgain 1.000 1 21 hm7G_associated_SNPs_2785 0 0 0 0 1 RNF17 chr13:25433139 3'AG 25433139 Downstream 76bp 2732 chr4 107246190 107246190 1 + G C rs11544777 107246190 + 107246170 107246210 41 GCAAATAATGATGCTGTTCTGAAGAGACTGGAGCAGAAGGG GCAAATAATGATGCTGTTCTCAAGAGACTGGAGCAGAAGGG Direct Loss 0.954553854914588 0 NA NA prediction 0.909107709829175 Functional Loss - AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107246190 chr4:107246190 synonymous SNV . 0 21 hm7G_associated_SNPs_2787 0 0 1 0 2 AIMP1 chr4:107246142 3'AG 107246142 Downstream 49bp 2733 chr4 107246190 107246190 1 + G C rs11544777 107246190 + 107246170 107246210 41 GCAAATAATGATGCTGTTCTGAAGAGACTGGAGCAGAAGGG GCAAATAATGATGCTGTTCTCAAGAGACTGGAGCAGAAGGG Direct Loss 0.954553854914588 0 NA NA prediction 0.909107709829175 Functional Loss - AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107246190 chr4:107246190 synonymous SNV . 0 21 hm7G_associated_SNPs_2787 0 0 1 0 2 AIMP1 chr4:107246275 5'GT 107246275 Upstream 86bp 2734 chr4 74285343 74285343 1 + G A OV 74285343 + 74285323 74285363 41 GGCTGACGATAAGGAGACCTGCTTTGCCGAGGAGGTACTAC GGCTGACGATAAGGAGACCTACTTTGCCGAGGAGGTACTAC Direct Loss 0.954536332867767 0 NA NA prediction 0.909072665735535 Functional Loss - ALB ENSG00000163631 CDS Human protein_coding chr4:74285343 chr4:74285343 nonsynonymous SNV 0.122 5 21 hm7G_associated_SNPs_2789 0 0 1 0 1 ALB chr4:74285356 5'GT 74285356 Upstream 14bp 2735 chr8 2057224 2057224 1 + G A SKCM 2057224 + 2057204 2057244 41 AATTAGCTTATGAGATTTTTGATAAGGGGCGGGTTCGCTTC AATTAGCTTATGAGATTTTTAATAAGGGGCGGGTTCGCTTC Direct Loss 0.954532315504672 0 NA NA prediction 0.909064631009344 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2057224 chr8:2057224 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2790 0 0 0 0 2 MYOM2 chr8:2057186 3'AG 2057186 Downstream 39bp 2736 chr8 2057224 2057224 1 + G A SKCM 2057224 + 2057204 2057244 41 AATTAGCTTATGAGATTTTTGATAAGGGGCGGGTTCGCTTC AATTAGCTTATGAGATTTTTAATAAGGGGCGGGTTCGCTTC Direct Loss 0.954532315504672 0 NA NA prediction 0.909064631009344 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2057224 chr8:2057224 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2790 0 0 0 0 2 MYOM2 chr8:2057322 5'GT 2057322 Upstream 99bp 2737 chr15 68121540 68121540 1 + G A GBM 68121540 + 68121520 68121560 41 TTCGCGCCCGAGAGGGATGAGCACGTGAAGAGCGCGGCGGT TTCGCGCCCGAGAGGGATGAACACGTGAAGAGCGCGGCGGT Direct Loss 0.954525357379161 0 NA NA prediction 0.909050714758322 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68121540 chr15:68121540 synonymous SNV . 0 21 hm7G_associated_SNPs_2791 0 0 0 0 2 SKOR1 chr15:68121517 3'AG 68121517 Downstream 24bp 2738 chr15 68121540 68121540 1 + G A GBM 68121540 + 68121520 68121560 41 TTCGCGCCCGAGAGGGATGAGCACGTGAAGAGCGCGGCGGT TTCGCGCCCGAGAGGGATGAACACGTGAAGAGCGCGGCGGT Direct Loss 0.954525357379161 0 NA NA prediction 0.909050714758322 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68121540 chr15:68121540 synonymous SNV . 0 21 hm7G_associated_SNPs_2791 0 0 0 0 2 SKOR1 chr15:68121607 5'GT 68121607 Upstream 68bp 2739 chr3 178938934 178938934 1 + G A BLCA 178938934 + 178938914 178938954 41 TCAAACAGGAGAAGAAGGATGAAACACAAAAGGTGTGTGAC TCAAACAGGAGAAGAAGGATAAAACACAAAAGGTGTGTGAC Direct Loss 0.954520476662657 0 NA NA prediction 0.909040953325315 Functional Loss - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178938934 chr3:178938934 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_2793 9 0 0 0 1 PIK3CA chr3:178938945 5'GT 178938945 Upstream 12bp 2740 chr7 90006865 90006865 1 + G T PAAD 90006865 + 90006845 90006885 41 TTAATAGAAGGAGCACATATGAACAAAGGAATGGGCCACAA TTAATAGAAGGAGCACATATTAACAAAGGAATGGGCCACAA Direct Loss 0.954516431416582 0 NA NA prediction 0.909032862833163 Functional Loss - GTPBP10 ENSG00000105793 CDS Human protein_coding chr7:90006865 chr7:90006865 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2794 0 0 1 0 1 GTPBP10 chr7:90006821 3'AG 90006821 Downstream 45bp 2741 chr19 57743539 57743539 1 + G A SKCM 57743539 + 57743519 57743559 41 TTCAAGTCGCAGATAGAGAAGGAAGGACTGGAGCACCAGCT TTCAAGTCGCAGATAGAGAAAGAAGGACTGGAGCACCAGCT Direct Loss 0.95451421960092 0 NA NA prediction 0.909028439201839 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743539 chr19:57743539 synonymous SNV . 0 21 hm7G_associated_SNPs_2795 0 0 0 0 1 AURKC chr19:57743592 5'GT 57743592 Upstream 54bp 2742 chr17 48824016 48824016 1 + G T HNSC 48824016 + 48823996 48824036 41 TCGAAAGTCATATAAGCACAGGAGCAAAAGTCGGGACAGAG TCGAAAGTCATATAAGCACATGAGCAAAAGTCGGGACAGAG Direct Loss 0.954502383534858 0 NA NA prediction 0.909004767069716 Functional Loss - LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48824016 chr17:48824016 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2796 0 0 1 0 1 LUC7L3 chr17:48824063 5'GT 48824063 Upstream 48bp 2743 chrX 135586542 135586542 1 + G A LUAD 135586542 + 135586522 135586562 41 GGCAGTTGGATTGGAGACCTGAGAGGCGAGCCGGACCATCC GGCAGTTGGATTGGAGACCTAAGAGGCGAGCCGGACCATCC Direct Loss 0.954469200114897 0 NA NA prediction 0.908938400229793 Functional Loss - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135586542 chrX:135586542 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2797 0 0 1 0 2 HTATSF1 chrX:135586523 3'AG 135586523 Downstream 20bp 2744 chrX 135586542 135586542 1 + G A LUAD 135586542 + 135586522 135586562 41 GGCAGTTGGATTGGAGACCTGAGAGGCGAGCCGGACCATCC GGCAGTTGGATTGGAGACCTAAGAGGCGAGCCGGACCATCC Direct Loss 0.954469200114897 0 NA NA prediction 0.908938400229793 Functional Loss - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135586542 chrX:135586542 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2797 0 0 1 0 2 HTATSF1 chrX:135586622 5'GT 135586622 Upstream 81bp 2745 chr19 41313417 41313417 1 + G A STAD 41313417 + 41313397 41313437 41 TCACTGTCTGGTATTTTGATGCCAAGGAGCGGGCAGCAGCC TCACTGTCTGGTATTTTGATACCAAGGAGCGGGCAGCAGCC Direct Loss 0.954467604511354 0 NA NA prediction 0.908935209022709 Functional Loss - EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41313417 chr19:41313417 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2798 0 0 1 0 2 EGLN2 chr19:41313389 3'AG 41313389 Downstream 29bp 2746 chr19 41313417 41313417 1 + G A STAD 41313417 + 41313397 41313437 41 TCACTGTCTGGTATTTTGATGCCAAGGAGCGGGCAGCAGCC TCACTGTCTGGTATTTTGATACCAAGGAGCGGGCAGCAGCC Direct Loss 0.954467604511354 0 NA NA prediction 0.908935209022709 Functional Loss - EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41313417 chr19:41313417 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2798 0 0 1 0 2 EGLN2 chr19:41313456 5'GT 41313456 Upstream 40bp 2747 chr17 79991414 79991414 1 + G T SARC 79991414 + 79991394 79991434 41 AAGGACACCATTGAGCGGCTGCGGGACAAGAAGCTGGCACC AAGGACACCATTGAGCGGCTTCGGGACAAGAAGCTGGCACC Direct Loss 0.95444161917589 0 NA NA prediction 0.90888323835178 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79991414 chr17:79991414 synonymous SNV . 0 21 hm7G_associated_SNPs_2800 0 0 1 0 2 RAC3 chr17:79991316 3'AG 79991316 Downstream 99bp 2748 chr17 79991414 79991414 1 + G T SARC 79991414 + 79991394 79991434 41 AAGGACACCATTGAGCGGCTGCGGGACAAGAAGCTGGCACC AAGGACACCATTGAGCGGCTTCGGGACAAGAAGCTGGCACC Direct Loss 0.95444161917589 0 NA NA prediction 0.90888323835178 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79991414 chr17:79991414 synonymous SNV . 0 21 hm7G_associated_SNPs_2800 0 0 1 0 2 RAC3 chr17:79991475 5'GT 79991475 Upstream 62bp 2749 chr1 57347200 57347200 1 + G C BLCA 57347200 + 57347180 57347220 41 AGTGTGAGACGGTATACAATGGGGAATGGAGGGAGCTTCGA AGTGTGAGACGGTATACAATCGGGAATGGAGGGAGCTTCGA Direct Loss 0.954427694316905 0 NA NA prediction 0.90885538863381 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57347200 chr1:57347200 nonsynonymous SNV 0.973 4 21 hm7G_associated_SNPs_2802 0 0 1 0 1 C8A chr1:57347118 3'AG 57347118 Downstream 83bp 2750 chr7 55990947 55990947 1 + G C LUAD 55990947 + 55990927 55990967 41 AAGAACCTCTATCGAGACGTGATGCTGGAGAACTACAGGAA AAGAACCTCTATCGAGACGTCATGCTGGAGAACTACAGGAA Direct Loss 0.954420789034642 0 NA NA prediction 0.908841578069283 Functional Loss - ZNF713 ENSG00000178665;ENSG00000249773 CDS Human other chr7:55990947 chr7:55990947 synonymous SNV . 0 21 hm7G_associated_SNPs_2803 0 0 0 0 2 ZNF713 chr7:55990855 3'AG 55990855 Downstream 93bp 2751 chr7 55990947 55990947 1 + G C LUAD 55990947 + 55990927 55990967 41 AAGAACCTCTATCGAGACGTGATGCTGGAGAACTACAGGAA AAGAACCTCTATCGAGACGTCATGCTGGAGAACTACAGGAA Direct Loss 0.954420789034642 0 NA NA prediction 0.908841578069283 Functional Loss - ZNF713 ENSG00000178665;ENSG00000249773 CDS Human other chr7:55990947 chr7:55990947 synonymous SNV . 0 21 hm7G_associated_SNPs_2803 0 0 0 0 2 ZNF713 chr7:55990981 5'GT 55990981 Upstream 35bp 2752 chr4 190878604 190878604 1 + G A GBM 190878604 + 190878584 190878624 41 GCTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAA GCTTTATTAGATGCAATGAAACAGGGGACATAGAAGCAAAA Direct Loss 0.954409506249168 0 NA NA prediction 0.908819012498337 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878604 chr4:190878604 nonsynonymous SNV 0.941 1 21 hm7G_associated_SNPs_2804 0 0 0 0 2 FRG1 chr4:190878553 3'AG 190878553 Downstream 52bp 2753 chr4 190878604 190878604 1 + G A GBM 190878604 + 190878584 190878624 41 GCTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAAA GCTTTATTAGATGCAATGAAACAGGGGACATAGAAGCAAAA Direct Loss 0.954409506249168 0 NA NA prediction 0.908819012498337 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878604 chr4:190878604 nonsynonymous SNV 0.941 1 21 hm7G_associated_SNPs_2804 0 0 0 0 2 FRG1 chr4:190878657 5'GT 190878657 Upstream 54bp 2754 chr1 31821768 31821768 1 + G A rs148958979 31821768 + 31821748 31821788 41 AAAAGGAAGAGGCAAAGTCAGCAGAGTTTGAGAAGCCTGAC AAAAGGAAGAGGCAAAGTCAACAGAGTTTGAGAAGCCTGAC Direct Loss 0.954405098422671 0 NA NA prediction 0.908810196845341 Functional Loss - ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31821768 chr1:31821768 nonsynonymous SNV 0.990 0 21 hm7G_associated_SNPs_2806 0 0 1 0 2 ZCCHC17 chr1:31821676 3'AG 31821676 Downstream 93bp 2755 chr1 31821768 31821768 1 + G A rs148958979 31821768 + 31821748 31821788 41 AAAAGGAAGAGGCAAAGTCAGCAGAGTTTGAGAAGCCTGAC AAAAGGAAGAGGCAAAGTCAACAGAGTTTGAGAAGCCTGAC Direct Loss 0.954405098422671 0 NA NA prediction 0.908810196845341 Functional Loss - ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31821768 chr1:31821768 nonsynonymous SNV 0.990 0 21 hm7G_associated_SNPs_2806 0 0 1 0 2 ZCCHC17 chr1:31821821 5'GT 31821821 Upstream 54bp 2756 chr1 233105702 233105702 1 + G T UCEC 233105702 + 233105682 233105722 41 AGAGTGTGCGTCATCGATGAGATTGGGAAGATGGAGCTCTT AGAGTGTGCGTCATCGATGATATTGGGAAGATGGAGCTCTT Direct Loss 0.954400097979857 0 NA NA prediction 0.908800195959714 Functional Loss - NTPCR ENSG00000135778 CDS Human protein_coding chr1:233105702 chr1:233105702 nonsynonymous SNV 0.989 4 21 hm7G_associated_SNPs_2807 0 0 1 0 1 NTPCR chr1:233105655 3'AG 233105655 Downstream 48bp 2757 chr2 73453017 73453017 1 + G A UCEC 73453017 + 73452997 73453037 41 GAGGAAGAGGAAGAGGAGGAGGAGGAGGAAGGAGAGCCAGA GAGGAAGAGGAAGAGGAGGAAGAGGAGGAAGGAGAGCCAGA Direct Loss 0.954398253948001 0 NA NA prediction 0.908796507896001 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73453017 chr2:73453017 synonymous SNV . 0 21 hm7G_associated_SNPs_2808 0 0 1 1 1 SMYD5 chr2:73452924 3'AG 73452924 Downstream 94bp 2758 chrX 69670506 69670506 1 + G A UCEC 69670506 + 69670486 69670526 41 TAGGTGAACAACACCAATCTGCAGGATGTGAGGCACGAGGA TAGGTGAACAACACCAATCTACAGGATGTGAGGCACGAGGA Direct Loss 0.954388418273022 0 NA NA prediction 0.908776836546044 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69670506 chrX:69670506 synonymous SNV . 0 21 hm7G_associated_SNPs_2810 0 0 0 0 1 DLG3 chrX:69670489 3'AG 69670489 Downstream 18bp 2759 chr2 29011567 29011567 1 + G A UCEC 29011567 + 29011547 29011587 41 TCTGATCCAGATAAGGATGTGCAAGGCTGGGGAGAAAATGA TCTGATCCAGATAAGGATGTACAAGGCTGGGGAGAAAATGA Direct Loss 0.954385918413748 0 NA NA prediction 0.908771836827496 Functional Loss - PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29011567 chr2:29011567 synonymous SNV . 0 21 hm7G_associated_SNPs_2811 0 0 1 0 1 PPP1CB chr2:29011524 3'AG 29011524 Downstream 44bp 2760 chr9 35042915 35042915 1 + G A LUSC 35042915 + 35042895 35042935 41 ACCTGTGTAAGCAGAAATCAGAAGTGGAGGAAGAAGGGGAA ACCTGTGTAAGCAGAAATCAAAAGTGGAGGAAGAAGGGGAA Direct Loss 0.954378337367713 0 NA NA prediction 0.908756674735427 Functional Loss - C9orf131 ENSG00000174038 CDS Human protein_coding chr9:35042915 chr9:35042915 nonsynonymous SNV 0.832 0 21 hm7G_associated_SNPs_2812 0 0 0 0 1 C9orf131 chr9:35042858 3'AG 35042858 Downstream 58bp 2761 chr7 100484493 100484493 1 + G T UCEC 100484493 + 100484473 100484513 41 GTAAGCGCCGAGGAGGAGGAGCTGCTGGGGAGCAGCGGGGG GTAAGCGCCGAGGAGGAGGATCTGCTGGGGAGCAGCGGGGG Direct Loss 0.954344552699406 0 NA NA prediction 0.908689105398813 Functional Loss - SRRT ENSG00000087087 CDS Human protein_coding chr7:100484493 chr7:100484493 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2815 0 0 1 0 2 SRRT chr7:100484416 3'AG 100484416 Downstream 78bp 2762 chr7 100484493 100484493 1 + G T UCEC 100484493 + 100484473 100484513 41 GTAAGCGCCGAGGAGGAGGAGCTGCTGGGGAGCAGCGGGGG GTAAGCGCCGAGGAGGAGGATCTGCTGGGGAGCAGCGGGGG Direct Loss 0.954344552699406 0 NA NA prediction 0.908689105398813 Functional Loss - SRRT ENSG00000087087 CDS Human protein_coding chr7:100484493 chr7:100484493 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2815 0 0 1 0 2 SRRT chr7:100484589 5'GT 100484589 Upstream 97bp 2763 chr19 41281569 41281569 1 + G A UCEC 41281569 + 41281549 41281589 41 GCTGTGTGCGGACCAGGAGTGCAGCCGTAAGAATGGGGAGG GCTGTGTGCGGACCAGGAGTACAGCCGTAAGAATGGGGAGG Direct Loss 0.95434033837734 0 NA NA prediction 0.90868067675468 Functional Loss - MIA ENSG00000261857;ENSG00000268975 CDS Human other chr19:41281569 chr19:41281569 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_2816 0 0 0 0 1 MIA chr19:41281574 5'GT 41281574 Upstream 6bp 2764 chr18 61558735 61558735 1 + G T LUSC 61558735 + 61558715 61558755 41 CTCAATTTATTCAAGCATCTGGCAAAAGCAAGCCCCACCCA CTCAATTTATTCAAGCATCTTGCAAAAGCAAGCCCCACCCA Direct Loss 0.954339172768332 0 NA NA prediction 0.908678345536664 Functional Loss - SERPINB2 ENSG00000197632 CDS Human protein_coding chr18:61558735 chr18:61558735 synonymous SNV . 0 21 hm7G_associated_SNPs_2817 0 0 1 0 1 SERPINB2 chr18:61558670 3'AG 61558670 Downstream 66bp 2765 chr17 61684713 61684713 1 + G T UCEC 61684713 + 61684693 61684733 41 GTGATTGTGGTTGAAGTGGAGGACAGAGAGAAGAAGGCTGT GTGATTGTGGTTGAAGTGGATGACAGAGAGAAGAAGGCTGT Direct Loss 0.954306009382326 0 NA NA prediction 0.908612018764653 Functional Loss - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61684713 chr17:61684713 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_2821 0 0 1 0 1 TACO1 chr17:61684647 3'AG 61684647 Downstream 67bp 2766 chr16 66886730 66886730 1 + G A SKCM 66886730 + 66886710 66886750 41 ACTCAGTGAGAGTGTCACCTGGATTGTGCTCCGGGAGCCCA ACTCAGTGAGAGTGTCACCTAGATTGTGCTCCGGGAGCCCA Direct Loss 0.954287948768322 0 NA NA prediction 0.908575897536645 Functional Loss - CA7 ENSG00000168748 CDS Human protein_coding chr16:66886730 chr16:66886730 stopgain 1.000 1 21 hm7G_associated_SNPs_2823 0 0 0 0 1 CA7 chr16:66886770 5'GT 66886770 Upstream 41bp 2767 chrX 83141586 83141586 1 + G T STAD 83141586 + 83141566 83141606 41 GCACCGTGGATTCATAAGCTGCTTTAAAGAACAACTGAGCA GCACCGTGGATTCATAAGCTTCTTTAAAGAACAACTGAGCA Direct Loss 0.954287393243305 0 NA NA prediction 0.908574786486609 Functional Loss - CYLC1 ENSG00000183035 CDS Human protein_coding chrX:83141586 chrX:83141586 synonymous SNV . 0 21 hm7G_associated_SNPs_2824 0 0 0 0 1 CYLC1 chrX:83141560 3'AG 83141560 Downstream 27bp 2768 chr2 7030343 7030343 1 + G A SKCM 7030343 + 7030323 7030363 41 TAATTGAGGGTGAGAATTGTGGAGAAGATGCTCTAAGAGAA TAATTGAGGGTGAGAATTGTAGAGAAGATGCTCTAAGAGAA Direct Loss 0.954267893052269 0 NA NA prediction 0.908535786104538 Functional Loss - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7030343 chr2:7030343 nonsynonymous SNV 0.320 5 21 hm7G_associated_SNPs_2826 0 0 0 0 1 RSAD2 chr2:7030307 3'AG 7030307 Downstream 37bp 2769 chr12 69743898 69743898 1 + G T LUSC 69743898 + 69743878 69743918 41 TTCTTTTCAGGGATGTGTTTGGCCAAATGGGAGAGTGGTTA TTCTTTTCAGGGATGTGTTTTGCCAAATGGGAGAGTGGTTA Direct Loss 0.954219868493456 0 NA NA prediction 0.908439736986912 Functional Loss - LYZ ENSG00000090382 CDS Human protein_coding chr12:69743898 chr12:69743898 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2827 0 0 1 0 1 LYZ chr12:69743888 3'AG 69743888 Downstream 11bp 2770 chr3 49452290 49452290 1 + G T GBM 49452290 + 49452270 49452310 41 AACCTCTCAAAACCCACAGAGAATAAGGGAAGGCAGCAGAG AACCTCTCAAAACCCACAGATAATAAGGGAAGGCAGCAGAG Direct Loss 0.954214153576528 0 NA NA prediction 0.908428307153056 Functional Loss - TCTA ENSG00000145022 CDS Human protein_coding chr3:49452290 chr3:49452290 stopgain 1.000 1 21 hm7G_associated_SNPs_2829 0 0 1 0 1 TCTA chr3:49452253 3'AG 49452253 Downstream 38bp 2771 chr1 180240974 180240974 1 + G A SKCM 180240974 + 180240954 180240994 41 TGTGCTTGTGTGGCAGGTTTGGTTTCAGAACAGAAGGGCCA TGTGCTTGTGTGGCAGGTTTAGTTTCAGAACAGAAGGGCCA Direct Loss 0.95421058227125 0 NA NA prediction 0.908421164542499 Functional Loss - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180240974 chr1:180240974 stopgain 1.000 1 21 hm7G_associated_SNPs_2830 0 0 0 0 1 LHX4 chr1:180240970 3'AG 180240970 Downstream 5bp 2772 chr3 63817416 63817416 1 + G A CESC 63817416 + 63817396 63817436 41 AGCTACTGGCCCAAAGACATGCTGAGCTTCAACAGTGTGAG AGCTACTGGCCCAAAGACATACTGAGCTTCAACAGTGTGAG Direct Loss 0.954200172042292 0 NA NA prediction 0.908400344084585 Functional Loss - C3orf49 ENSG00000163632 CDS Human protein_coding chr3:63817416 chr3:63817416 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_2831 0 0 0 0 1 C3orf49 chr3:63817356 3'AG 63817356 Downstream 61bp 2773 chr19 47111779 47111779 1 + G T STAD 47111779 + 47111759 47111799 41 CCGGAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACAC CCGGAGTTCCTGACCATGATTGCCAGAAAGATGAAGGACAC Direct Loss 0.954198858853625 0 NA NA prediction 0.90839771770725 Functional Loss - CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111779 chr19:47111779 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2832 0 0 1 0 2 CALM3 chr19:47111739 3'AG 47111739 Downstream 41bp 2774 chr19 47111779 47111779 1 + G T STAD 47111779 + 47111759 47111799 41 CCGGAGTTCCTGACCATGATGGCCAGAAAGATGAAGGACAC CCGGAGTTCCTGACCATGATTGCCAGAAAGATGAAGGACAC Direct Loss 0.954198858853625 0 NA NA prediction 0.90839771770725 Functional Loss - CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111779 chr19:47111779 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2832 0 0 1 0 2 CALM3 chr19:47111845 5'GT 47111845 Upstream 67bp 2775 chr1 11728998 11728998 1 + G T BLCA 11728998 + 11728978 11729018 41 TCCTGCGCAACCCGTGTGCTGAAGGTGGCATGGGGGCAGGG TCCTGCGCAACCCGTGTGCTTAAGGTGGCATGGGGGCAGGG Direct Loss 0.954179930922388 0 NA NA prediction 0.908359861844776 Functional Loss - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11728998 chr1:11728998 stopgain 0.899 1 21 hm7G_associated_SNPs_2833 0 0 1 0 1 FBXO6 chr1:11729001 5'GT 11729001 Upstream 4bp 2776 chr2 101183040 101183040 1 + G T UCEC 101183040 + 101183020 101183060 41 CCCCCAAGGAAAGTCTGAAAGAATTGGAAGAGGAGGCAGAA CCCCCAAGGAAAGTCTGAAATAATTGGAAGAGGAGGCAGAA Direct Loss 0.9541749057318 0 NA NA prediction 0.908349811463599 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101183040 chr2:101183040 stopgain 0.615 0 21 hm7G_associated_SNPs_2835 0 0 0 0 2 PDCL3 chr2:101182965 3'AG 101182965 Downstream 76bp 2777 chr2 101183040 101183040 1 + G T UCEC 101183040 + 101183020 101183060 41 CCCCCAAGGAAAGTCTGAAAGAATTGGAAGAGGAGGCAGAA CCCCCAAGGAAAGTCTGAAATAATTGGAAGAGGAGGCAGAA Direct Loss 0.9541749057318 0 NA NA prediction 0.908349811463599 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101183040 chr2:101183040 stopgain 0.615 0 21 hm7G_associated_SNPs_2835 0 0 0 0 2 PDCL3 chr2:101183091 5'GT 101183091 Upstream 52bp 2778 chr5 54327274 54327274 1 + G A UCEC 54327274 + 54327254 54327294 41 TCTTAGATCTGGAACCAAATGCAAGGTTACTGGCTGGGGAG TCTTAGATCTGGAACCAAATACAAGGTTACTGGCTGGGGAG Direct Loss 0.95416211512271 0 NA NA prediction 0.908324230245421 Functional Loss - GZMK ENSG00000113088 CDS Human protein_coding chr5:54327274 chr5:54327274 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_2836 0 0 0 0 1 GZMK chr5:54327192 3'AG 54327192 Downstream 83bp 2779 chr1 110211579 110211579 1 + G T UCEC 110211579 + 110211559 110211599 41 ACAGAAGCCAGTGGCTGAATGAAAAATTCAAGCTGGGCCTG ACAGAAGCCAGTGGCTGAATTAAAAATTCAAGCTGGGCCTG Direct Loss 0.954154052201656 0 NA NA prediction 0.908308104403313 Functional Loss - GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110211579 chr1:110211579 stopgain 0.978 0 21 hm7G_associated_SNPs_2837 0 0 0 0 2 GSTM2 chr1:110211547 3'AG 110211547 Downstream 33bp 2780 chr1 110211579 110211579 1 + G T UCEC 110211579 + 110211559 110211599 41 ACAGAAGCCAGTGGCTGAATGAAAAATTCAAGCTGGGCCTG ACAGAAGCCAGTGGCTGAATTAAAAATTCAAGCTGGGCCTG Direct Loss 0.954154052201656 0 NA NA prediction 0.908308104403313 Functional Loss - GSTM2 ENSG00000213366 CDS Human protein_coding chr1:110211579 chr1:110211579 stopgain 0.978 0 21 hm7G_associated_SNPs_2837 0 0 0 0 2 GSTM2 chr1:110211611 5'GT 110211611 Upstream 33bp 2781 chr19 54445332 54445332 1 + G A COAD 54445332 + 54445312 54445352 41 ACCTGTTCACCAAGCGCTACGCGGAGGAGGAGATGTACCGT ACCTGTTCACCAAGCGCTACACGGAGGAGGAGATGTACCGT Direct Loss 0.954147079970109 0 NA NA prediction 0.908294159940218 Functional Loss - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54445332 chr19:54445332 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_2838 0 0 0 0 1 CACNG7 chr19:54445290 3'AG 54445290 Downstream 43bp 2782 chrX 154299885 154299885 1 + G A UCEC 154299885 + 154299865 154299905 41 TTGTCTCAACCACGCTCTGAGCACAGAGAAGGAGGAAGTAA TTGTCTCAACCACGCTCTGAACACAGAGAAGGAGGAAGTAA Direct Loss 0.954144369725125 0 NA NA prediction 0.908288739450251 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154299885 chrX:154299885 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2839 0 0 1 0 1 BRCC3 chrX:154299925 5'GT 154299925 Upstream 41bp 2783 chr7 129853326 129853326 1 + G A LUAD 129853326 + 129853306 129853346 41 TGTTTCTGAAACAGATGTCTGAGGATAAAAAGGATGAAGGC TGTTTCTGAAACAGATGTCTAAGGATAAAAAGGATGAAGGC Direct Loss 0.954132432962911 0 NA NA prediction 0.908264865925822 Functional Loss - SSMEM1 ENSG00000165120 CDS Human protein_coding chr7:129853326 chr7:129853326 nonsynonymous SNV 0.680 1 21 hm7G_associated_SNPs_2842 0 0 0 0 2 SSMEM1 chr7:129853320 3'AG 129853320 Downstream 7bp 2784 chr7 129853326 129853326 1 + G A LUAD 129853326 + 129853306 129853346 41 TGTTTCTGAAACAGATGTCTGAGGATAAAAAGGATGAAGGC TGTTTCTGAAACAGATGTCTAAGGATAAAAAGGATGAAGGC Direct Loss 0.954132432962911 0 NA NA prediction 0.908264865925822 Functional Loss - SSMEM1 ENSG00000165120 CDS Human protein_coding chr7:129853326 chr7:129853326 nonsynonymous SNV 0.680 1 21 hm7G_associated_SNPs_2842 0 0 0 0 2 SSMEM1 chr7:129853374 5'GT 129853374 Upstream 49bp 2785 chr1 47610350 47610350 1 + G A SKCM 47610350 + 47610330 47610370 41 GCTCTGGCCACACACCCCAAGCATCAGGAGAGGTGCCGGGA GCTCTGGCCACACACCCCAAACATCAGGAGAGGTGCCGGGA Direct Loss 0.954114416223912 0 NA NA prediction 0.908228832447823 Functional Loss - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610350 chr1:47610350 synonymous SNV . 0 21 hm7G_associated_SNPs_2843 0 0 0 0 1 CYP4A22 chr1:47610412 5'GT 47610412 Upstream 63bp 2786 chr1 1847940 1847940 1 + G A UCEC 1847940 + 1847920 1847960 41 GAGTCTTTGAGATGTTCGACGAAGAGGGCAACGGGGAGGTG GAGTCTTTGAGATGTTCGACAAAGAGGGCAACGGGGAGGTG Direct Loss 0.954104478643649 0 NA NA prediction 0.908208957287298 Functional Loss - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1847940 chr1:1847940 nonsynonymous SNV 0.032 2 21 hm7G_associated_SNPs_2844 0 0 0 0 1 CALML6 chr1:1847880 3'AG 1847880 Downstream 61bp 2787 chr6 43488123 43488123 1 + G T UCEC 43488123 + 43488103 43488143 41 TCATCGCTCAGCTGCGGCCTGGCCAAGAAATTGACCTGCTC TCATCGCTCAGCTGCGGCCTTGCCAAGAAATTGACCTGCTC Direct Loss 0.954098246610862 0 NA NA prediction 0.908196493221724 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488123 chr6:43488123 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2845 0 0 1 0 1 POLR1C chr6:43488165 5'GT 43488165 Upstream 43bp 2788 chr2 61413604 61413604 1 + G A UCEC 61413604 + 61413584 61413624 41 ACAAATAAGAAGATCATCATGAAATGGAGATGTGGGAACTG ACAAATAAGAAGATCATCATAAAATGGAGATGTGGGAACTG Direct Loss 0.954072021352549 0 NA NA prediction 0.908144042705098 Functional Loss - AHSA2 ENSG00000173209 CDS Human protein_coding chr2:61413604 chr2:61413604 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2847 0 0 1 2 2 AHSA2 chr2:61413581 3'AG 61413581 Downstream 24bp 2789 chr2 61413604 61413604 1 + G A UCEC 61413604 + 61413584 61413624 41 ACAAATAAGAAGATCATCATGAAATGGAGATGTGGGAACTG ACAAATAAGAAGATCATCATAAAATGGAGATGTGGGAACTG Direct Loss 0.954072021352549 0 NA NA prediction 0.908144042705098 Functional Loss - AHSA2 ENSG00000173209 CDS Human protein_coding chr2:61413604 chr2:61413604 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2847 0 0 1 2 2 AHSA2 chr2:61413632 5'GT 61413632 Upstream 29bp 2790 chr17 37790215 37790215 1 + G T SARC 37790215 + 37790195 37790235 41 GCCTCAGAGGAGGAGGATGAGCTGGGGGAGCTTCGGGAGCT GCCTCAGAGGAGGAGGATGATCTGGGGGAGCTTCGGGAGCT Direct Loss 0.954057831288024 0 NA NA prediction 0.908115662576048 Functional Loss - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37790215 chr17:37790215 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2849 0 0 0 0 1 PPP1R1B chr17:37790136 3'AG 37790136 Downstream 80bp 2791 chr17 4389539 4389539 1 + G C CESC 4389539 + 4389519 4389559 41 GCAGTCTGTGGTGGTGCCCAGATGCCGGGGGACGGCAGAGG GCAGTCTGTGGTGGTGCCCACATGCCGGGGGACGGCAGAGG Direct Loss 0.954057477365668 0 NA NA prediction 0.908114954731337 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4389539 chr17:4389539 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_2850 0 0 0 0 2 SPNS3 chr17:4389523 3'AG 4389523 Downstream 17bp 2792 chr17 4389539 4389539 1 + G C CESC 4389539 + 4389519 4389559 41 GCAGTCTGTGGTGGTGCCCAGATGCCGGGGGACGGCAGAGG GCAGTCTGTGGTGGTGCCCACATGCCGGGGGACGGCAGAGG Direct Loss 0.954057477365668 0 NA NA prediction 0.908114954731337 Functional Loss - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4389539 chr17:4389539 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_2850 0 0 0 0 2 SPNS3 chr17:4389621 5'GT 4389621 Upstream 83bp 2793 chr20 57561169 57561169 1 + G T STAD 57561169 + 57561149 57561189 41 AGGAGGATGATTCTGGAGAAGGAGAGGATGATGCGGAGGTT AGGAGGATGATTCTGGAGAATGAGAGGATGATGCGGAGGTT Direct Loss 0.954056153265662 0 NA NA prediction 0.908112306531323 Functional Loss - NELFCD ENSG00000101158 CDS Human protein_coding chr20:57561169 chr20:57561169 stopgain 0.995 1 21 hm7G_associated_SNPs_2851 0 0 1 0 2 NELFCD chr20:57561148 3'AG 57561148 Downstream 22bp 2794 chr20 57561169 57561169 1 + G T STAD 57561169 + 57561149 57561189 41 AGGAGGATGATTCTGGAGAAGGAGAGGATGATGCGGAGGTT AGGAGGATGATTCTGGAGAATGAGAGGATGATGCGGAGGTT Direct Loss 0.954056153265662 0 NA NA prediction 0.908112306531323 Functional Loss - NELFCD ENSG00000101158 CDS Human protein_coding chr20:57561169 chr20:57561169 stopgain 0.995 1 21 hm7G_associated_SNPs_2851 0 0 1 0 2 NELFCD chr20:57561263 5'GT 57561263 Upstream 95bp 2795 chr2 187373311 187373311 1 + G T LIHC 187373311 + 187373291 187373331 41 CTGGAGGTAGGGCTGAAAATGGTGAAAGAAGTGACTTGGAA CTGGAGGTAGGGCTGAAAATTGTGAAAGAAGTGACTTGGAA Direct Loss 0.953983157266445 0 NA NA prediction 0.907966314532889 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187373311 chr2:187373311 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2856 0 0 1 0 1 ZC3H15 chr2:187373270 3'AG 187373270 Downstream 42bp 2796 chr19 581392 581392 1 + G C ESCA 581392 + 581372 581412 41 GAGCTACACATTGAGAACCTGAACATGGAGGCCGACCCCGG GAGCTACACATTGAGAACCTCAACATGGAGGCCGACCCCGG Direct Loss 0.953982311831931 0 NA NA prediction 0.907964623663862 Functional Loss - BSG ENSG00000172270 CDS Human protein_coding chr19:581392 chr19:581392 synonymous SNV . 0 21 hm7G_associated_SNPs_2857 0 0 1 0 1 BSG chr19:581315 3'AG 581315 Downstream 78bp 2797 chrX 68058466 68058466 1 + G A HNSC 68058466 + 68058446 68058486 41 TTCCTTCTGGGCAGGTTCCTGAGTGGGAAGGGCTTGGTGAT TTCCTTCTGGGCAGGTTCCTAAGTGGGAAGGGCTTGGTGAT Direct Loss 0.953980521178442 0 NA NA prediction 0.907961042356884 Functional Loss - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68058466 chrX:68058466 synonymous SNV . 0 21 hm7G_associated_SNPs_2858 0 0 0 0 1 EFNB1 chrX:68058460 3'AG 68058460 Downstream 7bp 2798 chr2 219679681 219679681 1 + G T LUSC 219679681 + 219679661 219679701 41 GCCCCGGAGACGGGGGAGTTGAAGAGTGTGGCCCGCATTGT GCCCCGGAGACGGGGGAGTTTAAGAGTGTGGCCCGCATTGT Direct Loss 0.95397232753339 0 NA NA prediction 0.90794465506678 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219679681 chr2:219679681 nonsynonymous SNV 0.630 1 21 hm7G_associated_SNPs_2859 0 0 1 0 1 CYP27A1 chr2:219679634 3'AG 219679634 Downstream 48bp 2799 chr19 9949317 9949317 1 + G C UCEC 9949317 + 9949297 9949337 41 AAGGAGGAGGCCCTGGAGCTGATCAACGGTGAGCAGGGCGA AAGGAGGAGGCCCTGGAGCTCATCAACGGTGAGCAGGGCGA Direct Loss 0.953959339292739 0 NA NA prediction 0.907918678585477 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9949317 chr19:9949317 synonymous SNV . 0 21 hm7G_associated_SNPs_2860 0 0 1 0 1 PIN1 chr19:9949324 5'GT 9949324 Upstream 8bp 2800 chr1 11718921 11718921 1 + G T LUAD 11718921 + 11718901 11718941 41 GCAGAAGAGCGATGCCAAGTGGAGGGAGGTGCGTGGGCCTG GCAGAAGAGCGATGCCAAGTTGAGGGAGGTGCGTGGGCCTG Direct Loss 0.95395915103672 0 NA NA prediction 0.90791830207344 Functional Loss - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718921 chr1:11718921 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2861 0 0 1 0 1 FBXO44 chr1:11718928 5'GT 11718928 Upstream 8bp 2801 chr4 41263801 41263801 1 + G T SARC 41263801 + 41263781 41263821 41 CCCTGAAGACAGAGCAAAATGCTTTGAAAAGAATGAGGTAA CCCTGAAGACAGAGCAAAATTCTTTGAAAAGAATGAGGTAA Direct Loss 0.953955349603421 0 NA NA prediction 0.907910699206842 Functional Loss - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41263801 chr4:41263801 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_2862 0 0 1 0 2 UCHL1 chr4:41263732 3'AG 41263732 Downstream 70bp 2802 chr4 41263801 41263801 1 + G T SARC 41263801 + 41263781 41263821 41 CCCTGAAGACAGAGCAAAATGCTTTGAAAAGAATGAGGTAA CCCTGAAGACAGAGCAAAATTCTTTGAAAAGAATGAGGTAA Direct Loss 0.953955349603421 0 NA NA prediction 0.907910699206842 Functional Loss - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41263801 chr4:41263801 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_2862 0 0 1 0 2 UCHL1 chr4:41263817 5'GT 41263817 Upstream 17bp 2803 chr3 133191275 133191275 1 + G A SKCM 133191275 + 133191255 133191295 41 GGCGCTGTGGTCGGCCGGCTGGAGGCGGAGCTCAGGGAAAT GGCGCTGTGGTCGGCCGGCTAGAGGCGGAGCTCAGGGAAAT Direct Loss 0.953949356083457 0 NA NA prediction 0.907898712166914 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133191275 chr3:133191275 synonymous SNV . 0 21 hm7G_associated_SNPs_2863 0 0 0 0 1 BFSP2 chr3:133191189 3'AG 133191189 Downstream 87bp 2804 chr14 74727339 74727339 1 + G T UCEC 74727339 + 74727319 74727359 41 GGCAGCAGCCGAGTCGGGGAGGAAGCCCGAGGGGGAACGCC GGCAGCAGCCGAGTCGGGGATGAAGCCCGAGGGGGAACGCC Direct Loss 0.953947118484143 0 NA NA prediction 0.907894236968287 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74727339 chr14:74727339 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2864 0 0 0 0 1 VSX2 chr14:74727297 3'AG 74727297 Downstream 43bp 2805 chr3 119306404 119306404 1 + G T BLCA 119306404 + 119306384 119306424 41 TTCCCTGAGTCTTTCGGTGTGAAGGAGAGGGATCAGTTCTA TTCCCTGAGTCTTTCGGTGTTAAGGAGAGGGATCAGTTCTA Direct Loss 0.953941625165769 0 NA NA prediction 0.907883250331539 Functional Loss - ADPRH ENSG00000144843 CDS Human protein_coding chr3:119306404 chr3:119306404 synonymous SNV . 0 21 hm7G_associated_SNPs_2865 0 0 0 0 1 ADPRH chr3:119306311 3'AG 119306311 Downstream 94bp 2806 chr19 13888902 13888902 1 + G A GBM 13888902 + 13888882 13888922 41 TCCGGAAGAAGATCGAACATGACGTGGTGATGAAAGCCAGC TCCGGAAGAAGATCGAACATAACGTGGTGATGAAAGCCAGC Direct Loss 0.95392336977289 0 NA NA prediction 0.907846739545779 Functional Loss - C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13888902 chr19:13888902 nonsynonymous SNV 0.809 1 21 hm7G_associated_SNPs_2867 0 0 1 0 1 C19orf53 chr19:13888866 3'AG 13888866 Downstream 37bp 2807 chr19 33464996 33464996 1 + G C LUAD 33464996 + 33464976 33465016 41 TTAAAGGAATTGTAGTCGTTGAAAAAACCCGGATGAGTGAA TTAAAGGAATTGTAGTCGTTCAAAAAACCCGGATGAGTGAA Direct Loss 0.953921115533893 0 NA NA prediction 0.907842231067786 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33464996 chr19:33464996 nonsynonymous SNV 0.728 3 21 hm7G_associated_SNPs_2868 0 0 1 0 1 FAAP24 chr19:33464966 3'AG 33464966 Downstream 31bp 2808 chr17 38122577 38122577 1 + G T LUAD 38122577 + 38122557 38122597 41 ACCCGAGTGGAGGGAGATGTGGATGTACCAAAGACGGTGAA ACCCGAGTGGAGGGAGATGTTGATGTACCAAAGACGGTGAA Direct Loss 0.953902276655917 0 NA NA prediction 0.907804553311834 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38122577 chr17:38122577 synonymous SNV . 0 21 hm7G_associated_SNPs_2869 0 0 0 0 1 GSDMA chr17:38122513 3'AG 38122513 Downstream 65bp 2809 chrX 153678411 153678411 1 + G A UCEC 153678411 + 153678391 153678431 41 TTTGATGTTCATGACGATGTGCGGTTGCTCAGTGACGCCAC TTTGATGTTCATGACGATGTACGGTTGCTCAGTGACGCCAC Direct Loss 0.953899327965657 0 NA NA prediction 0.907798655931314 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678411 chrX:153678411 synonymous SNV . 0 21 hm7G_associated_SNPs_2870 0 0 1 0 2 FAM50A chrX:153678377 3'AG 153678377 Downstream 35bp 2810 chrX 153678411 153678411 1 + G A UCEC 153678411 + 153678391 153678431 41 TTTGATGTTCATGACGATGTGCGGTTGCTCAGTGACGCCAC TTTGATGTTCATGACGATGTACGGTTGCTCAGTGACGCCAC Direct Loss 0.953899327965657 0 NA NA prediction 0.907798655931314 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153678411 chrX:153678411 synonymous SNV . 0 21 hm7G_associated_SNPs_2870 0 0 1 0 2 FAM50A chrX:153678447 5'GT 153678447 Upstream 37bp 2811 chr9 1052075 1052075 1 + G T rs372312394 1052075 + 1052055 1052095 41 CAGTGCGCCAACTGCCTGCTGGTGGTGGAGCGGCAGCGCGT CAGTGCGCCAACTGCCTGCTTGTGGTGGAGCGGCAGCGCGT Direct Loss 0.953887344676194 0 NA NA prediction 0.907774689352388 Functional Loss - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1052075 chr9:1052075 synonymous SNV . 0 21 hm7G_associated_SNPs_2872 0 0 0 0 1 DMRT2 chr9:1052138 5'GT 1052138 Upstream 64bp 2812 chr6 7862565 7862565 1 + G T LUSC 7862565 + 7862545 7862585 41 CACCCCCGAGCCGCAGGCCTGGTGGGCAGAGACGGCCCTTA CACCCCCGAGCCGCAGGCCTTGTGGGCAGAGACGGCCCTTA Direct Loss 0.953853934081218 0 NA NA prediction 0.907707868162436 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862565 chr6:7862565 synonymous SNV . 0 21 hm7G_associated_SNPs_2873 0 0 0 0 1 BMP6 chr6:7862534 3'AG 7862534 Downstream 32bp 2813 chr11 46749582 46749582 1 + G T COAD 46749582 + 46749562 46749602 41 CGGAAGAGTCCCCAGGAGCTGCTGTGTGGGGCCAGCCTCAT CGGAAGAGTCCCCAGGAGCTTCTGTGTGGGGCCAGCCTCAT Direct Loss 0.953850314126773 0 NA NA prediction 0.907700628253546 Functional Loss - F2 ENSG00000180210 CDS Human protein_coding chr11:46749582 chr11:46749582 synonymous SNV . 0 21 hm7G_associated_SNPs_2874 0 0 1 1 1 F2 chr11:46749546 3'AG 46749546 Downstream 37bp 2814 chr2 170488410 170488410 1 + G A LGG 170488410 + 170488390 170488430 41 TAAAGCTGATGAGAAGGAAAGGAAAAACAGAGAGAGAGAAA TAAAGCTGATGAGAAGGAAAAGAAAAACAGAGAGAGAGAAA Direct Loss 0.95382424170071 0 NA NA prediction 0.90764848340142 Functional Loss - PPIG ENSG00000138398 CDS Human protein_coding chr2:170488410 chr2:170488410 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_2875 0 0 1 0 1 PPIG chr2:170488443 5'GT 170488443 Upstream 34bp 2815 chr1 27618778 27618778 1 + G T LUSC 27618778 + 27618758 27618798 41 ACAGAGTACTGTGGCCAGCTGGTGGAGGCCAAGTGCCTCAC ACAGAGTACTGTGGCCAGCTTGTGGAGGCCAAGTGCCTCAC Direct Loss 0.953820653572979 0 NA NA prediction 0.907641307145958 Functional Loss - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27618778 chr1:27618778 synonymous SNV . 0 21 hm7G_associated_SNPs_2876 0 0 1 0 1 WDTC1 chr1:27618706 3'AG 27618706 Downstream 73bp 2816 chrX 12994912 12994912 1 + G A DLBC 12994912 + 12994892 12994932 41 ACAGCGATTGAACAGGAGAAGCAAGCAGGCGAATCGTAATG ACAGCGATTGAACAGGAGAAACAAGCAGGCGAATCGTAATG Direct Loss 0.953793303358313 0 NA NA prediction 0.907586606716625 Functional Loss - TMSB4X ENSG00000205542 CDS Human protein_coding chrX:12994912 chrX:12994912 synonymous SNV . 0 21 hm7G_associated_SNPs_2879 0 0 1 0 1 TMSB4X chrX:12994896 3'AG 12994896 Downstream 17bp 2817 chr10 112269781 112269781 1 + G A UCEC 112269781 + 112269761 112269801 41 TCTTTTCTTCCTTCCAGACTGTGTCAGGGAAAAGGGAGGCA TCTTTTCTTCCTTCCAGACTATGTCAGGGAAAAGGGAGGCA Direct Loss 0.953771715069131 0 NA NA prediction 0.907543430138263 Functional Loss - DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112269781 chr10:112269781 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2880 0 0 0 0 1 DUSP5 chr10:112269778 3'AG 112269778 Downstream 4bp 2818 chr8 145139196 145139196 1 + G T STAD 145139196 + 145139176 145139216 41 CAATCTCTTCCAGACCTTCTGCCAGAAAGGGGGCCTGTTGT CAATCTCTTCCAGACCTTCTTCCAGAAAGGGGGCCTGTTGT Direct Loss 0.953768331706698 0 NA NA prediction 0.907536663413396 Functional Loss - GPAA1 ENSG00000197858 CDS Human protein_coding chr8:145139196 chr8:145139196 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_2881 0 0 1 0 1 GPAA1 chr8:145139233 5'GT 145139233 Upstream 38bp 2819 chr5 176733449 176733449 1 + G T CESC 176733449 + 176733429 176733469 41 CCCCTTCCAAAACACTTGTTGAGACAGCCAAGGAAGCCAAG CCCCTTCCAAAACACTTGTTTAGACAGCCAAGGAAGCCAAG Direct Loss 0.953767192470199 0 NA NA prediction 0.907534384940398 Functional Loss - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733449 chr5:176733449 stopgain 1.000 1 21 hm7G_associated_SNPs_2882 0 0 1 0 1 PRELID1 chr5:176733423 3'AG 176733423 Downstream 27bp 2820 chr20 60883492 60883492 1 + G A LUSC 60883492 + 60883472 60883512 41 CTCATGTGCCAGTTCGGTCTGCCTGCAGAGGCTGTGGAGGC CTCATGTGCCAGTTCGGTCTACCTGCAGAGGCTGTGGAGGC Direct Loss 0.953756374658181 0 NA NA prediction 0.907512749316361 Functional Loss - ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60883492 chr20:60883492 synonymous SNV . 0 21 hm7G_associated_SNPs_2883 0 0 1 0 2 ADRM1 chr20:60883424 3'AG 60883424 Downstream 69bp 2821 chr20 60883492 60883492 1 + G A LUSC 60883492 + 60883472 60883512 41 CTCATGTGCCAGTTCGGTCTGCCTGCAGAGGCTGTGGAGGC CTCATGTGCCAGTTCGGTCTACCTGCAGAGGCTGTGGAGGC Direct Loss 0.953756374658181 0 NA NA prediction 0.907512749316361 Functional Loss - ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60883492 chr20:60883492 synonymous SNV . 0 21 hm7G_associated_SNPs_2883 0 0 1 0 2 ADRM1 chr20:60883526 5'GT 60883526 Upstream 35bp 2822 chr19 15654785 15654785 1 + G A SKCM 15654785 + 15654765 15654805 41 TCTACTGCCCATTCCAGGATGAAGATGGAAAGGAACTGTCA TCTACTGCCCATTCCAGGATAAAGATGGAAAGGAACTGTCA Direct Loss 0.953748915819617 0 NA NA prediction 0.907497831639234 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15654785 chr19:15654785 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_2884 0 0 0 0 1 CYP4F22 chr19:15654782 3'AG 15654782 Downstream 4bp 2823 chrX 102864047 102864047 1 + G C KIRC 102864047 + 102864027 102864067 41 TGGAAAACGAGGGAAAGCCAGAAGATGAAGTAGAGCCTGAT TGGAAAACGAGGGAAAGCCACAAGATGAAGTAGAGCCTGAT Direct Loss 0.95374437673603 0 NA NA prediction 0.907488753472061 Functional Loss - TCEAL3 ENSG00000196507 CDS Human protein_coding chrX:102864047 chrX:102864047 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2886 0 0 0 0 1 TCEAL3 chrX:102863966 3'AG 102863966 Downstream 82bp 2824 chr18 61166520 61166520 1 + G A SKCM 61166520 + 61166500 61166540 41 GAGTCCACAGGCTTGGAGAAGGTAAGGAGAAGGCAGGTGCT GAGTCCACAGGCTTGGAGAAAGTAAGGAGAAGGCAGGTGCT Direct Loss 0.953727465341189 0 NA NA prediction 0.907454930682378 Functional Loss - SERPINB5 ENSG00000206075 CDS Human protein_coding chr18:61166520 chr18:61166520 synonymous SNV . 0 21 hm7G_associated_SNPs_2887 0 0 0 0 1 SERPINB5 chr18:61166520 5'GT 61166520 Upstream 1bp 2825 chrX 151815504 151815504 1 + G A SARC 151815504 + 151815484 151815524 41 TTGACCCTGGACTATCGGATGCATGAGAAGTTGTGGGTCCC TTGACCCTGGACTATCGGATACATGAGAAGTTGTGGGTCCC Direct Loss 0.953720801065124 0 NA NA prediction 0.907441602130248 Functional Loss - GABRQ ENSG00000147402 CDS Human other chrX:151815504 chrX:151815504 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_2889 0 0 0 0 1 GABRQ chrX:151815409 3'AG 151815409 Downstream 96bp 2826 chr9 100843178 100843178 1 + G A rs374656906 100843178 + 100843158 100843198 41 GCGATATCTGTGGCCGCAGTGGCTCTGGGGGCCAAGGTGTT GCGATATCTGTGGCCGCAGTAGCTCTGGGGGCCAAGGTGTT Direct Loss 0.9537141004986 0 NA NA prediction 0.9074282009972 Functional Loss - NANS ENSG00000095380 CDS Human protein_coding chr9:100843178 chr9:100843178 synonymous SNV . 0 21 hm7G_associated_SNPs_2890 0 0 1 0 1 NANS chr9:100843098 3'AG 100843098 Downstream 81bp 2827 chr17 4510689 4510689 1 + G A rs34935540 4510689 + 4510669 4510709 41 TGTGAGCGCCTCATCGAAGTGGAGGACATGATGGTGATGGG TGTGAGCGCCTCATCGAAGTAGAGGACATGATGGTGATGGG Direct Loss 0.953711474069262 0 NA NA prediction 0.907422948138525 Functional Loss - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4510689 chr17:4510689 synonymous SNV . 0 21 hm7G_associated_SNPs_2891 0 0 0 0 1 SMTNL2 chr17:4510656 3'AG 4510656 Downstream 34bp 2828 chrX 119500515 119500515 1 + G A SKCM 119500515 + 119500495 119500535 41 AAGAAGAGGAGGAAGAGGAGGAAAAGGAGGAGGAAGAGGGT AAGAAGAGGAGGAAGAGGAGAAAAAGGAGGAGGAAGAGGGT Direct Loss 0.95369302260881 0 NA NA prediction 0.907386045217619 Functional Loss - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119500515 chrX:119500515 nonsynonymous SNV 0.924 0 21 hm7G_associated_SNPs_2893 0 0 0 0 1 ATP1B4 chrX:119500539 5'GT 119500539 Upstream 25bp 2829 chr4 57377377 57377377 1 + G A rs61732641 57377377 + 57377357 57377397 41 AACAAGCAAATCCTAGTGCTGGGCCTGGATGGAGCAGGAAA AACAAGCAAATCCTAGTGCTAGGCCTGGATGGAGCAGGAAA Direct Loss 0.953692501234856 0 NA NA prediction 0.907385002469712 Functional Loss - ARL9 ENSG00000196503 UTR5 Human protein_coding chr4:57377377 chr4:57377377 . . 0 21 hm7G_associated_SNPs_2894 0 0 1 0 1 ARL9 chr4:57377351 3'AG 57377351 Downstream 27bp 2830 chr5 33461793 33461793 1 + G T UCEC 33461793 + 33461773 33461813 41 AACTTGAAAACAGTCTGAATGAATTTGGTGAAAAGTGGGAG AACTTGAAAACAGTCTGAATTAATTTGGTGAAAAGTGGGAG Direct Loss 0.953687795732802 0 NA NA prediction 0.907375591465603 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33461793 chr5:33461793 stopgain 1.000 1 21 hm7G_associated_SNPs_2896 0 0 1 0 2 TARS chr5:33461772 3'AG 33461772 Downstream 22bp 2831 chr5 33461793 33461793 1 + G T UCEC 33461793 + 33461773 33461813 41 AACTTGAAAACAGTCTGAATGAATTTGGTGAAAAGTGGGAG AACTTGAAAACAGTCTGAATTAATTTGGTGAAAAGTGGGAG Direct Loss 0.953687795732802 0 NA NA prediction 0.907375591465603 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33461793 chr5:33461793 stopgain 1.000 1 21 hm7G_associated_SNPs_2896 0 0 1 0 2 TARS chr5:33461849 5'GT 33461849 Upstream 57bp 2832 chr11 64126908 64126908 1 + G T SARC 64126908 + 64126888 64126928 41 AACTTCGAGCTGCTCAAGGTGCTGGGCACGGGAGGTGAGGA AACTTCGAGCTGCTCAAGGTTCTGGGCACGGGAGGTGAGGA Direct Loss 0.953678805505934 0 NA NA prediction 0.907357611011869 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64126908 chr11:64126908 synonymous SNV . 0 21 hm7G_associated_SNPs_2897 0 0 1 0 2 RPS6KA4 chr11:64126850 3'AG 64126850 Downstream 59bp 2833 chr11 64126908 64126908 1 + G T SARC 64126908 + 64126888 64126928 41 AACTTCGAGCTGCTCAAGGTGCTGGGCACGGGAGGTGAGGA AACTTCGAGCTGCTCAAGGTTCTGGGCACGGGAGGTGAGGA Direct Loss 0.953678805505934 0 NA NA prediction 0.907357611011869 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64126908 chr11:64126908 synonymous SNV . 0 21 hm7G_associated_SNPs_2897 0 0 1 0 2 RPS6KA4 chr11:64126921 5'GT 64126921 Upstream 14bp 2834 chr18 3255823 3255823 1 + G A STAD 3255823 + 3255803 3255843 41 GATGAGGAAGTGGATGAGCTGTACAGAGAAGCACCTATTGA GATGAGGAAGTGGATGAGCTATACAGAGAAGCACCTATTGA Direct Loss 0.953672330246242 0 NA NA prediction 0.907344660492483 Functional Loss - MYL12A ENSG00000101608 CDS Human protein_coding chr18:3255823 chr18:3255823 synonymous SNV . 0 21 hm7G_associated_SNPs_2898 0 0 1 0 1 MYL12A chr18:3255744 3'AG 3255744 Downstream 80bp 2835 chr20 43936847 43936847 1 + G A OV 43936847 + 43936827 43936867 41 GACAGATCAGAGATGCAGCTGCAGAGCGAAGCCGACAGGCG GACAGATCAGAGATGCAGCTACAGAGCGAAGCCGACAGGCG Direct Loss 0.953669645530724 0 NA NA prediction 0.907339291061449 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936847 chr20:43936847 synonymous SNV . 0 21 hm7G_associated_SNPs_2899 0 0 0 0 2 RBPJL chr20:43936783 3'AG 43936783 Downstream 65bp 2836 chr20 43936847 43936847 1 + G A OV 43936847 + 43936827 43936867 41 GACAGATCAGAGATGCAGCTGCAGAGCGAAGCCGACAGGCG GACAGATCAGAGATGCAGCTACAGAGCGAAGCCGACAGGCG Direct Loss 0.953669645530724 0 NA NA prediction 0.907339291061449 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936847 chr20:43936847 synonymous SNV . 0 21 hm7G_associated_SNPs_2899 0 0 0 0 2 RBPJL chr20:43936891 5'GT 43936891 Upstream 45bp 2837 chr1 154295556 154295556 1 + G T SARC 154295556 + 154295536 154295576 41 TCTTGGTGCAGTTGCTGTCTGCTTTCTGTGCTTCGGGAGCC TCTTGGTGCAGTTGCTGTCTTCTTTCTGTGCTTCGGGAGCC Direct Loss 0.953666774920529 0 NA NA prediction 0.907333549841058 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295556 chr1:154295556 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_2900 0 0 0 0 2 AQP10 chr1:154295458 3'AG 154295458 Downstream 99bp 2838 chr1 154295556 154295556 1 + G T SARC 154295556 + 154295536 154295576 41 TCTTGGTGCAGTTGCTGTCTGCTTTCTGTGCTTCGGGAGCC TCTTGGTGCAGTTGCTGTCTTCTTTCTGTGCTTCGGGAGCC Direct Loss 0.953666774920529 0 NA NA prediction 0.907333549841058 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295556 chr1:154295556 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_2900 0 0 0 0 2 AQP10 chr1:154295595 5'GT 154295595 Upstream 40bp 2839 chrX 49173707 49173707 1 + G T LUSC 49173707 + 49173687 49173727 41 CTGGGTGTGAGTGTGGAGATGGTCCTGATGGCCAGGAGATG CTGGGTGTGAGTGTGGAGATTGTCCTGATGGCCAGGAGATG Direct Loss 0.953665034111351 0 NA NA prediction 0.907330068222701 Functional Loss - GAGE10 ENSG00000215274 CDS Human protein_coding chrX:49173707 chrX:49173707 nonsynonymous SNV 0.063 3 21 hm7G_associated_SNPs_2901 0 0 0 0 1 GAGE10 chrX:49173767 5'GT 49173767 Upstream 61bp 2840 chr11 63965439 63965439 1 + G A STAD 63965439 + 63965419 63965459 41 CCCAGATGTGCTCAAGAAATGCCAGCAGGTGCGTAGGAAAA CCCAGATGTGCTCAAGAAATACCAGCAGGTGCGTAGGAAAA Direct Loss 0.953661001426722 0 NA NA prediction 0.907322002853444 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965439 chr11:63965439 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2902 0 0 1 0 1 STIP1 chr11:63965446 5'GT 63965446 Upstream 8bp 2841 chr16 28948597 28948597 1 + G T UCS 28948597 + 28948577 28948617 41 TCCCCAAACCCCCAGGCCCAGAAGAAGAGGAAGGGGAGGGC TCCCCAAACCCCCAGGCCCATAAGAAGAGGAAGGGGAGGGC Direct Loss 0.953647982007495 0 NA NA prediction 0.907295964014991 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28948597 chr16:28948597 stopgain 0.614 0 21 hm7G_associated_SNPs_2904 0 0 0 0 1 CD19 chr16:28948592 3'AG 28948592 Downstream 6bp 2842 chr6 43613024 43613024 1 + G C BLCA 43613024 + 43613004 43613044 41 TACTACATCGCGCAGGGCCTGAGTGAGGACCAGCTCGCACC TACTACATCGCGCAGGGCCTCAGTGAGGACCAGCTCGCACC Direct Loss 0.953647891684901 0 NA NA prediction 0.907295783369803 Functional Loss - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43613024 chr6:43613024 synonymous SNV . 0 21 hm7G_associated_SNPs_2905 0 0 0 0 1 RSPH9 chr6:43613062 5'GT 43613062 Upstream 39bp 2843 chr5 78379064 78379064 1 + G A rs61058144 78379064 + 78379044 78379084 41 TTTGGGCCCGACACCAGCTTGAAGACGATGGAGCTCATGAA TTTGGGCCCGACACCAGCTTAAAGACGATGGAGCTCATGAA Direct Loss 0.953647081834685 0 NA NA prediction 0.907294163669369 Functional Loss - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78379064 chr5:78379064 synonymous SNV . 0 21 hm7G_associated_SNPs_2906 0 0 0 0 1 BHMT2 chr5:78379015 3'AG 78379015 Downstream 50bp 2844 chr2 174229684 174229684 1 + G A BLCA 174229684 + 174229664 174229704 41 GAGGATAAGTACATGTTGGTGAGAAAGAGGAAGACCGTGGA GAGGATAAGTACATGTTGGTAAGAAAGAGGAAGACCGTGGA Direct Loss 0.953616279408068 0 NA NA prediction 0.907232558816136 Functional Loss - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174229684 chr2:174229684 synonymous SNV . 0 21 hm7G_associated_SNPs_2907 0 0 1 0 1 CDCA7 chr2:174229717 5'GT 174229717 Upstream 34bp 2845 chr12 104324296 104324296 1 + G A CESC 104324296 + 104324276 104324316 41 ACTCACCGGCCGCACGCCATGAGGGCCCTGTGGGTGCTGGG ACTCACCGGCCGCACGCCATAAGGGCCCTGTGGGTGCTGGG Direct Loss 0.953613271251821 0 NA NA prediction 0.907226542503641 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104324296 chr12:104324296 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2908 0 0 1 0 1 HSP90B1 chr12:104324342 5'GT 104324342 Upstream 47bp 2846 chr20 43535062 43535062 1 + G A BLCA 43535062 + 43535042 43535082 41 AGGGAGACGAAGGAGACGCTGGGGAGGGAGAGAACTAATGT AGGGAGACGAAGGAGACGCTAGGGAGGGAGAGAACTAATGT Direct Loss 0.953608978105007 0 NA NA prediction 0.907217956210014 Functional Loss - YWHAB ENSG00000166913 CDS Human protein_coding chr20:43535062 chr20:43535062 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_2911 0 0 1 0 1 YWHAB chr20:43535023 3'AG 43535023 Downstream 40bp 2847 chr16 28601721 28601721 1 + G A UCEC 28601721 + 28601701 28601741 41 CGTGGATGGGGACGAGCAGTGGATCCTGGCCGAGGTGGTCA CGTGGATGGGGACGAGCAGTAGATCCTGGCCGAGGTGGTCA Direct Loss 0.95360443855337 0 NA NA prediction 0.907208877106741 Functional Loss - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28601721 chr16:28601721 stopgain 0.981 1 21 hm7G_associated_SNPs_2913 0 0 0 0 1 SGF29 chr16:28601763 5'GT 28601763 Upstream 43bp 2848 chr7 45216990 45216990 1 + G A SKCM 45216990 + 45216970 45217010 41 GGGAAGGCTTTCGCAGACATGATGGGCAAGGTGGACGTCTG GGGAAGGCTTTCGCAGACATAATGGGCAAGGTGGACGTCTG Direct Loss 0.953583655568588 0 NA NA prediction 0.907167311137177 Functional Loss - RAMP3 ENSG00000122679 CDS Human protein_coding chr7:45216990 chr7:45216990 nonsynonymous SNV 0.886 0 21 hm7G_associated_SNPs_2914 0 0 0 0 2 RAMP3 chr7:45216908 3'AG 45216908 Downstream 83bp 2849 chr7 45216990 45216990 1 + G A SKCM 45216990 + 45216970 45217010 41 GGGAAGGCTTTCGCAGACATGATGGGCAAGGTGGACGTCTG GGGAAGGCTTTCGCAGACATAATGGGCAAGGTGGACGTCTG Direct Loss 0.953583655568588 0 NA NA prediction 0.907167311137177 Functional Loss - RAMP3 ENSG00000122679 CDS Human protein_coding chr7:45216990 chr7:45216990 nonsynonymous SNV 0.886 0 21 hm7G_associated_SNPs_2914 0 0 0 0 2 RAMP3 chr7:45217040 5'GT 45217040 Upstream 51bp 2850 chr16 105857 105857 1 + G A CESC 105857 + 105837 105877 41 TGCAGCTCAAGCAGGAGCGTGAAGGGGGCATTCAGCACATC TGCAGCTCAAGCAGGAGCGTAAAGGGGGCATTCAGCACATC Direct Loss 0.95357736614448 0 NA NA prediction 0.907154732288959 Functional Loss - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:105857 chr16:105857 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_2915 0 0 1 0 2 SNRNP25 chr16:105777 3'AG 105777 Downstream 81bp 2851 chr16 105857 105857 1 + G A CESC 105857 + 105837 105877 41 TGCAGCTCAAGCAGGAGCGTGAAGGGGGCATTCAGCACATC TGCAGCTCAAGCAGGAGCGTAAAGGGGGCATTCAGCACATC Direct Loss 0.95357736614448 0 NA NA prediction 0.907154732288959 Functional Loss - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:105857 chr16:105857 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_2915 0 0 1 0 2 SNRNP25 chr16:105882 5'GT 105882 Upstream 26bp 2852 chr11 65732888 65732888 1 + G A rs191909806 65732888 + 65732868 65732908 41 ATCGAGAGGAGCCGGCAGCTGCAGAAGGAGAAGGACCTGGC ATCGAGAGGAGCCGGCAGCTACAGAAGGAGAAGGACCTGGC Direct Loss 0.953562790121459 0 NA NA prediction 0.907125580242919 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65732888 chr11:65732888 synonymous SNV . 0 21 hm7G_associated_SNPs_2917 0 0 1 0 1 SART1 chr11:65732813 3'AG 65732813 Downstream 76bp 2853 chr7 102016699 102016699 1 + G A rs113586670 102016699 + 102016679 102016719 41 AAACATCATCATGGAGTGGAGGTGAAGGAAGTGGAGCAGGG AAACATCATCATGGAGTGGAAGTGAAGGAAGTGGAGCAGGG Direct Loss 0.953552275175419 0 NA NA prediction 0.907104550350837 Functional Loss - LOC100289561 ENSG00000239969 ncRNA_exonic Human protein_coding chr7:102016699 chr7:102016699 . . 0 21 hm7G_associated_SNPs_2918 0 0 0 0 1 LOC100289561 chr7:102016769 5'GT 102016769 Upstream 71bp 2854 chr18 905390 905390 1 + G T COAD 905390 + 905370 905410 41 TTTCCCATCCTGCGCAGAATGACCATGTGTAGCGGAGCGAG TTTCCCATCCTGCGCAGAATTACCATGTGTAGCGGAGCGAG Direct Loss 0.953532333717263 0 NA NA prediction 0.907064667434525 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human processed_transcript chr18:905390 chr18:905390 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2920 0 0 0 0 1 ADCYAP1 chr18:905387 3'AG 905387 Downstream 4bp 2855 chr10 15014541 15014541 1 + G A BLCA 15014541 + 15014521 15014561 41 TGGCCGGAGACAGGATATGTGAAGAAACTTCAGAGAAGGGA TGGCCGGAGACAGGATATGTAAAGAAACTTCAGAGAAGGGA Direct Loss 0.953529621248503 0 NA NA prediction 0.907059242497005 Functional Loss - MEIG1 ENSG00000197889 CDS Human protein_coding chr10:15014541 chr10:15014541 synonymous SNV . 0 21 hm7G_associated_SNPs_2921 0 0 0 0 1 MEIG1 chr10:15014512 3'AG 15014512 Downstream 30bp 2856 chr2 27908000 27908000 1 + G T BLCA 27908000 + 27907980 27908020 41 AGGAAGAGGAAGAGGAAGAAGAGAAAGAAAAGGAGGAGCAT AGGAAGAGGAAGAGGAAGAATAGAAAGAAAAGGAGGAGCAT Direct Loss 0.953497881351388 0 NA NA prediction 0.906995762702776 Functional Loss - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27908000 chr2:27908000 stopgain 0.934 0 21 hm7G_associated_SNPs_2923 0 0 0 0 1 SLC4A1AP chr2:27907904 3'AG 27907904 Downstream 97bp 2857 chr7 97362008 97362008 1 + G A BLCA 97362008 + 97361988 97362028 41 ATAGGAGCCAATGATGATCTGAATTACTGGTCCGACTGGTA ATAGGAGCCAATGATGATCTAAATTACTGGTCCGACTGGTA Direct Loss 0.953477601746928 0 NA NA prediction 0.906955203493855 Functional Loss - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97362008 chr7:97362008 synonymous SNV . 0 21 hm7G_associated_SNPs_2924 0 0 0 0 2 TAC1 chr7:97361916 3'AG 97361916 Downstream 93bp 2858 chr7 97362008 97362008 1 + G A BLCA 97362008 + 97361988 97362028 41 ATAGGAGCCAATGATGATCTGAATTACTGGTCCGACTGGTA ATAGGAGCCAATGATGATCTAAATTACTGGTCCGACTGGTA Direct Loss 0.953477601746928 0 NA NA prediction 0.906955203493855 Functional Loss - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97362008 chr7:97362008 synonymous SNV . 0 21 hm7G_associated_SNPs_2924 0 0 0 0 2 TAC1 chr7:97362047 5'GT 97362047 Upstream 40bp 2859 chr22 39078050 39078050 1 + G T UCEC 39078050 + 39078030 39078070 41 CGGACGAATTGCTCCCGAAAGGCGACGCGGAGAAGCCTGAG CGGACGAATTGCTCCCGAAATGCGACGCGGAGAAGCCTGAG Direct Loss 0.953466565696339 0 NA NA prediction 0.906933131392678 Functional Loss - TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078050 chr22:39078050 nonsynonymous SNV 0.963 2 21 hm7G_associated_SNPs_2926 0 0 1 0 1 TOMM22 chr22:39078100 5'GT 39078100 Upstream 51bp 2860 chr8 109462671 109462671 1 + G A BRCA 109462671 + 109462651 109462691 41 ATCTAGTTTGGATCATATATGAACAGGTGATGATTGCAGCA ATCTAGTTTGGATCATATATAAACAGGTGATGATTGCAGCA Direct Loss 0.953463959813943 0 NA NA prediction 0.906927919627886 Functional Loss - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109462671 chr8:109462671 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2927 0 0 1 0 2 EMC2 chr8:109462657 3'AG 109462657 Downstream 15bp 2861 chr8 109462671 109462671 1 + G A BRCA 109462671 + 109462651 109462691 41 ATCTAGTTTGGATCATATATGAACAGGTGATGATTGCAGCA ATCTAGTTTGGATCATATATAAACAGGTGATGATTGCAGCA Direct Loss 0.953463959813943 0 NA NA prediction 0.906927919627886 Functional Loss - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109462671 chr8:109462671 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2927 0 0 1 0 2 EMC2 chr8:109462721 5'GT 109462721 Upstream 51bp 2862 chr9 12698537 12698537 1 + G C PAAD 12698537 + 12698517 12698557 41 GATATCTGCACGGATGACTTGATGGGATCCAGAAGCAACTT GATATCTGCACGGATGACTTCATGGGATCCAGAAGCAACTT Direct Loss 0.953454306858224 0 NA NA prediction 0.906908613716448 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12698537 chr9:12698537 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2928 0 0 0 0 1 TYRP1 chr9:12698451 3'AG 12698451 Downstream 87bp 2863 chr2 234094518 234094518 1 + G A SKCM 234094518 + 234094498 234094538 41 AGAGTCAGGAAGGAGAAAATGAAGAAGGAAGTGAGGGGGAG AGAGTCAGGAAGGAGAAAATAAAGAAGGAAGTGAGGGGGAG Direct Loss 0.953452294576191 0 NA NA prediction 0.906904589152382 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234094518 chr2:234094518 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2929 0 0 1 0 2 INPP5D chr2:234094489 3'AG 234094489 Downstream 30bp 2864 chr2 234094518 234094518 1 + G A SKCM 234094518 + 234094498 234094538 41 AGAGTCAGGAAGGAGAAAATGAAGAAGGAAGTGAGGGGGAG AGAGTCAGGAAGGAGAAAATAAAGAAGGAAGTGAGGGGGAG Direct Loss 0.953452294576191 0 NA NA prediction 0.906904589152382 Functional Loss - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234094518 chr2:234094518 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2929 0 0 1 0 2 INPP5D chr2:234094571 5'GT 234094571 Upstream 54bp 2865 chr4 57366814 57366814 1 + G C LUAD 57366814 + 57366794 57366834 41 AAGGGTAAAAAGAAGGATCAGATTGGAAAAGGGACCCAGGG AAGGGTAAAAAGAAGGATCACATTGGAAAAGGGACCCAGGG Direct Loss 0.95342777361843 0 NA NA prediction 0.906855547236859 Functional Loss - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57366814 chr4:57366814 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_2932 0 0 1 2 1 SRP72 chr4:57366861 5'GT 57366861 Upstream 48bp 2866 chr4 174294599 174294599 1 + G A BLCA 174294599 + 174294579 174294619 41 AATTCAGAGTGTTCGAAACAGAAGAAAGAGAAAAGGGAGTG AATTCAGAGTGTTCGAAACAAAAGAAAGAGAAAAGGGAGTG Direct Loss 0.953407180701512 0 NA NA prediction 0.906814361403024 Functional Loss - SAP30 ENSG00000164105 CDS Human protein_coding chr4:174294599 chr4:174294599 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2933 0 0 1 0 2 SAP30 chr4:174294541 3'AG 174294541 Downstream 59bp 2867 chr4 174294599 174294599 1 + G A BLCA 174294599 + 174294579 174294619 41 AATTCAGAGTGTTCGAAACAGAAGAAAGAGAAAAGGGAGTG AATTCAGAGTGTTCGAAACAAAAGAAAGAGAAAAGGGAGTG Direct Loss 0.953407180701512 0 NA NA prediction 0.906814361403024 Functional Loss - SAP30 ENSG00000164105 CDS Human protein_coding chr4:174294599 chr4:174294599 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2933 0 0 1 0 2 SAP30 chr4:174294666 5'GT 174294666 Upstream 68bp 2868 chrX 150154623 150154623 1 + G T THYM 150154623 + 150154603 150154643 41 ATTATGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCT ATTATGGACCAGCTAAGGGATGCAAGAAGAAGAAGGATCCT Direct Loss 0.953404329066785 0 NA NA prediction 0.906808658133571 Functional Loss - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150154623 chrX:150154623 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2934 0 0 1 0 2 HMGB3 chrX:150154524 3'AG 150154524 Downstream 100bp 2869 chrX 150154623 150154623 1 + G T THYM 150154623 + 150154603 150154643 41 ATTATGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCT ATTATGGACCAGCTAAGGGATGCAAGAAGAAGAAGGATCCT Direct Loss 0.953404329066785 0 NA NA prediction 0.906808658133571 Functional Loss - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150154623 chrX:150154623 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2934 0 0 1 0 2 HMGB3 chrX:150154663 5'GT 150154663 Upstream 41bp 2870 chr1 86047927 86047927 1 + G A BLCA 86047927 + 86047907 86047947 41 TTGACGAGAAACAATGAATTGATTGCAGTTGGAAAAGGCAG TTGACGAGAAACAATGAATTAATTGCAGTTGGAAAAGGCAG Direct Loss 0.953401813024034 0 NA NA prediction 0.906803626048069 Functional Loss - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86047927 chr1:86047927 synonymous SNV . 0 21 hm7G_associated_SNPs_2935 0 0 1 0 1 CYR61 chr1:86047967 5'GT 86047967 Upstream 41bp 2871 chr1 46871118 46871118 1 + G A UCEC 46871118 + 46871098 46871138 41 GACAGCGTAGTGGTGCATGTGCTGAAGCTGCAGGGTGCCGT GACAGCGTAGTGGTGCATGTACTGAAGCTGCAGGGTGCCGT Direct Loss 0.953385202370389 0 NA NA prediction 0.906770404740777 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871118 chr1:46871118 synonymous SNV . 0 21 hm7G_associated_SNPs_2936 0 0 0 0 2 FAAH chr1:46871044 3'AG 46871044 Downstream 75bp 2872 chr1 46871118 46871118 1 + G A UCEC 46871118 + 46871098 46871138 41 GACAGCGTAGTGGTGCATGTGCTGAAGCTGCAGGGTGCCGT GACAGCGTAGTGGTGCATGTACTGAAGCTGCAGGGTGCCGT Direct Loss 0.953385202370389 0 NA NA prediction 0.906770404740777 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871118 chr1:46871118 synonymous SNV . 0 21 hm7G_associated_SNPs_2936 0 0 0 0 2 FAAH chr1:46871177 5'GT 46871177 Upstream 60bp 2873 chr2 108910720 108910720 1 + G C BLCA 108910720 + 108910700 108910740 41 AGGAAATTGTGGATATGATTGAACAGAATGGGGACGTGGAG AGGAAATTGTGGATATGATTCAACAGAATGGGGACGTGGAG Direct Loss 0.95338198771383 0 NA NA prediction 0.90676397542766 Functional Loss - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910720 chr2:108910720 nonsynonymous SNV 0.992 0 21 hm7G_associated_SNPs_2937 0 0 0 0 2 SULT1C2 chr2:108910685 3'AG 108910685 Downstream 36bp 2874 chr2 108910720 108910720 1 + G C BLCA 108910720 + 108910700 108910740 41 AGGAAATTGTGGATATGATTGAACAGAATGGGGACGTGGAG AGGAAATTGTGGATATGATTCAACAGAATGGGGACGTGGAG Direct Loss 0.95338198771383 0 NA NA prediction 0.90676397542766 Functional Loss - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910720 chr2:108910720 nonsynonymous SNV 0.992 0 21 hm7G_associated_SNPs_2937 0 0 0 0 2 SULT1C2 chr2:108910810 5'GT 108910810 Upstream 91bp 2875 chr5 148695757 148695757 1 + G C LUSC 148695757 + 148695737 148695777 41 GCAGAACTGAAGGGCTCAATGAGCAGGGCTGCGGGCCGCAA GCAGAACTGAAGGGCTCAATCAGCAGGGCTGCGGGCCGCAA Direct Loss 0.953364791715643 0 NA NA prediction 0.906729583431286 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695757 chr5:148695757 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_2938 0 0 1 0 1 AFAP1L1 chr5:148695714 3'AG 148695714 Downstream 44bp 2876 chr2 97462825 97462825 1 + G A SKCM 97462825 + 97462805 97462845 41 TTCTACGAGGTCCTGGGCCTGGTCACCCTGGAGGACGTGAT TTCTACGAGGTCCTGGGCCTAGTCACCCTGGAGGACGTGAT Direct Loss 0.953343998205127 0 NA NA prediction 0.906687996410254 Functional Loss - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97462825 chr2:97462825 synonymous SNV . 0 21 hm7G_associated_SNPs_2939 0 0 1 0 2 CNNM4 chr2:97462749 3'AG 97462749 Downstream 77bp 2877 chr2 97462825 97462825 1 + G A SKCM 97462825 + 97462805 97462845 41 TTCTACGAGGTCCTGGGCCTGGTCACCCTGGAGGACGTGAT TTCTACGAGGTCCTGGGCCTAGTCACCCTGGAGGACGTGAT Direct Loss 0.953343998205127 0 NA NA prediction 0.906687996410254 Functional Loss - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97462825 chr2:97462825 synonymous SNV . 0 21 hm7G_associated_SNPs_2939 0 0 1 0 2 CNNM4 chr2:97462892 5'GT 97462892 Upstream 68bp 2878 chr3 125690939 125690939 1 + G A SKCM 125690939 + 125690919 125690959 41 ACATGCATCCCGCCGGAGCTGCCGAAAATGCTGAAGGAGTT ACATGCATCCCGCCGGAGCTACCGAAAATGCTGAAGGAGTT Direct Loss 0.95333510091695 0 NA NA prediction 0.906670201833901 Functional Loss - ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125690939 chr3:125690939 synonymous SNV . 0 21 hm7G_associated_SNPs_2940 0 0 0 0 2 ROPN1B chr3:125690886 3'AG 125690886 Downstream 54bp 2879 chr3 125690939 125690939 1 + G A SKCM 125690939 + 125690919 125690959 41 ACATGCATCCCGCCGGAGCTGCCGAAAATGCTGAAGGAGTT ACATGCATCCCGCCGGAGCTACCGAAAATGCTGAAGGAGTT Direct Loss 0.95333510091695 0 NA NA prediction 0.906670201833901 Functional Loss - ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125690939 chr3:125690939 synonymous SNV . 0 21 hm7G_associated_SNPs_2940 0 0 0 0 2 ROPN1B chr3:125691013 5'GT 125691013 Upstream 75bp 2880 chr20 53092512 53092512 1 + G A GBM 53092512 + 53092492 53092532 41 TCCAATTTTAATGACATAGTGAAGCAAGGGTACGTGAGGAT TCCAATTTTAATGACATAGTAAAGCAAGGGTACGTGAGGAT Direct Loss 0.953330420633633 0 NA NA prediction 0.906660841267267 Functional Loss - DOK5 ENSG00000101134 CDS Human protein_coding chr20:53092512 chr20:53092512 synonymous SNV . 0 21 hm7G_associated_SNPs_2941 0 0 0 0 1 DOK5 chr20:53092551 5'GT 53092551 Upstream 40bp 2881 chr12 50030561 50030561 1 + G C HNSC 50030561 + 50030541 50030581 41 TCCGAGCTTTGGAGAGGGAAGAGGAGGAGGAACGGGAGCGG TCCGAGCTTTGGAGAGGGAACAGGAGGAGGAACGGGAGCGG Direct Loss 0.953310937968526 0 NA NA prediction 0.906621875937053 Functional Loss - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50030561 chr12:50030561 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2942 0 0 0 0 2 PRPF40B chr12:50030499 3'AG 50030499 Downstream 63bp 2882 chr12 50030561 50030561 1 + G C HNSC 50030561 + 50030541 50030581 41 TCCGAGCTTTGGAGAGGGAAGAGGAGGAGGAACGGGAGCGG TCCGAGCTTTGGAGAGGGAACAGGAGGAGGAACGGGAGCGG Direct Loss 0.953310937968526 0 NA NA prediction 0.906621875937053 Functional Loss - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50030561 chr12:50030561 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2942 0 0 0 0 2 PRPF40B chr12:50030632 5'GT 50030632 Upstream 72bp 2883 chr17 37790282 37790282 1 + G C BLCA 37790282 + 37790262 37790302 41 AGGAAGAGGAGGATGATGAAGAAGAGGAAGAAGAAGAGGAC AGGAAGAGGAGGATGATGAACAAGAGGAAGAAGAAGAGGAC Direct Loss 0.953307605367682 0 NA NA prediction 0.906615210735364 Functional Loss - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37790282 chr17:37790282 nonsynonymous SNV 0.940 1 21 hm7G_associated_SNPs_2943 0 0 0 0 1 PPP1R1B chr17:37790339 5'GT 37790339 Upstream 58bp 2884 chr12 122460019 122460019 1 + G A LUSC 122460019 + 122459999 122460039 41 TGTCGGGCAGGTCGGTTCGAGCCGAGACGAGGAGCCGGGCC TGTCGGGCAGGTCGGTTCGAACCGAGACGAGGAGCCGGGCC Direct Loss 0.953301678057185 0 NA NA prediction 0.906603356114369 Functional Loss - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122460019 chr12:122460019 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2944 0 0 1 0 1 BCL7A chr12:122460089 5'GT 122460089 Upstream 71bp 2885 chr3 184024587 184024587 1 + G A LAML 184024587 + 184024567 184024607 41 TTGCTATGGGGGAGGAGATTGGTGCAGAGATGGCATTACGA TTGCTATGGGGGAGGAGATTAGTGCAGAGATGGCATTACGA Direct Loss 0.953299144976971 0 NA NA prediction 0.906598289953942 Functional Loss - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184024587 chr3:184024587 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2945 0 0 1 0 2 PSMD2 chr3:184024539 3'AG 184024539 Downstream 49bp 2886 chr3 184024587 184024587 1 + G A LAML 184024587 + 184024567 184024607 41 TTGCTATGGGGGAGGAGATTGGTGCAGAGATGGCATTACGA TTGCTATGGGGGAGGAGATTAGTGCAGAGATGGCATTACGA Direct Loss 0.953299144976971 0 NA NA prediction 0.906598289953942 Functional Loss - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184024587 chr3:184024587 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2945 0 0 1 0 2 PSMD2 chr3:184024622 5'GT 184024622 Upstream 36bp 2887 chr1 32650191 32650191 1 + G C OV 32650191 + 32650171 32650211 41 CCCCAGAGGAGAAGCTGGCTGCTCTGTGCAAGAAGTATGCT CCCCAGAGGAGAAGCTGGCTCCTCTGTGCAAGAAGTATGCT Direct Loss 0.95328881605365 0 NA NA prediction 0.906577632107301 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32650191 chr1:32650191 nonsynonymous SNV 0.953 4 21 hm7G_associated_SNPs_2946 0 0 1 0 2 TXLNA chr1:32650126 3'AG 32650126 Downstream 66bp 2888 chr1 32650191 32650191 1 + G C OV 32650191 + 32650171 32650211 41 CCCCAGAGGAGAAGCTGGCTGCTCTGTGCAAGAAGTATGCT CCCCAGAGGAGAAGCTGGCTCCTCTGTGCAAGAAGTATGCT Direct Loss 0.95328881605365 0 NA NA prediction 0.906577632107301 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32650191 chr1:32650191 nonsynonymous SNV 0.953 4 21 hm7G_associated_SNPs_2946 0 0 1 0 2 TXLNA chr1:32650217 5'GT 32650217 Upstream 27bp 2889 chr1 6270935 6270935 1 + G C CESC 6270935 + 6270915 6270955 41 TCCTCACTGCCACAGGAGCTGATGGAGAGGCTGCAGGGCAT TCCTCACTGCCACAGGAGCTCATGGAGAGGCTGCAGGGCAT Direct Loss 0.953273716880365 0 NA NA prediction 0.90654743376073 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6270935 chr1:6270935 synonymous SNV . 0 21 hm7G_associated_SNPs_2948 0 0 1 1 2 RNF207 chr1:6270930 3'AG 6270930 Downstream 6bp 2890 chr1 6270935 6270935 1 + G C CESC 6270935 + 6270915 6270955 41 TCCTCACTGCCACAGGAGCTGATGGAGAGGCTGCAGGGCAT TCCTCACTGCCACAGGAGCTCATGGAGAGGCTGCAGGGCAT Direct Loss 0.953273716880365 0 NA NA prediction 0.90654743376073 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6270935 chr1:6270935 synonymous SNV . 0 21 hm7G_associated_SNPs_2948 0 0 1 1 2 RNF207 chr1:6270998 5'GT 6270998 Upstream 64bp 2891 chr2 71365676 71365676 1 + G A rs357756 71365676 + 71365656 71365696 41 TTAGAAAAAAAGCCGTGGCAGCTTCAGGGGGAAGTGACAGC TTAGAAAAAAAGCCGTGGCAACTTCAGGGGGAAGTGACAGC Direct Loss 0.953265193091366 0 NA NA prediction 0.906530386182733 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71365676 chr2:71365676 synonymous SNV . 0 21 hm7G_associated_SNPs_2950 0 0 1 0 2 MPHOSPH10 chr2:71365620 3'AG 71365620 Downstream 57bp 2892 chr2 71365676 71365676 1 + G A rs357756 71365676 + 71365656 71365696 41 TTAGAAAAAAAGCCGTGGCAGCTTCAGGGGGAAGTGACAGC TTAGAAAAAAAGCCGTGGCAACTTCAGGGGGAAGTGACAGC Direct Loss 0.953265193091366 0 NA NA prediction 0.906530386182733 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71365676 chr2:71365676 synonymous SNV . 0 21 hm7G_associated_SNPs_2950 0 0 1 0 2 MPHOSPH10 chr2:71365761 5'GT 71365761 Upstream 86bp 2893 chr16 15501889 15501889 1 + G A LUSC 15501889 + 15501869 15501909 41 TCTGTTTTTCCCAGCAGAGTGGTGACGGCACATTCAAGTCA TCTGTTTTTCCCAGCAGAGTAGTGACGGCACATTCAAGTCA Direct Loss 0.953263803254646 0 NA NA prediction 0.906527606509292 Functional Loss - MPV17L ENSG00000156968 CDS Human protein_coding chr16:15501889 chr16:15501889 stopgain 0.763 2 21 hm7G_associated_SNPs_2951 0 0 0 0 1 MPV17L chr16:15501790 3'AG 15501790 Downstream 100bp 2894 chr3 136667180 136667180 1 + G A UCEC 136667180 + 136667160 136667200 41 ACTAAAAGAGACTGTCTACTGCATTGGGCAGCGTAAATTCA ACTAAAAGAGACTGTCTACTACATTGGGCAGCGTAAATTCA Direct Loss 0.953257607435158 0 NA NA prediction 0.906515214870315 Functional Loss - NCK1 ENSG00000158092 CDS Human protein_coding chr3:136667180 chr3:136667180 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_2952 0 0 1 0 1 NCK1 chr3:136667101 3'AG 136667101 Downstream 80bp 2895 chr3 11078599 11078599 1 + G A SKCM 11078599 + 11078579 11078619 41 ACATCGTTCGCCCAGAGAATGGTCCTGAGCAGCCCCAGGCG ACATCGTTCGCCCAGAGAATAGTCCTGAGCAGCCCCAGGCG Direct Loss 0.953257585935595 0 NA NA prediction 0.90651517187119 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11078599 chr3:11078599 nonsynonymous SNV 0.863 1 21 hm7G_associated_SNPs_2953 0 0 1 0 1 SLC6A1 chr3:11078548 3'AG 11078548 Downstream 52bp 2896 chr8 104340586 104340586 1 + G T COAD 104340586 + 104340566 104340606 41 TCTCTGCTGTCTTCTGGGTTGGAAGCAAAAAGACATGCACA TCTCTGCTGTCTTCTGGGTTTGAAGCAAAAAGACATGCACA Direct Loss 0.953255715450962 0 NA NA prediction 0.906511430901925 Functional Loss - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104340586 chr8:104340586 stopgain 1.000 1 21 hm7G_associated_SNPs_2954 0 0 1 0 1 FZD6 chr8:104340496 3'AG 104340496 Downstream 91bp 2897 chr16 20787204 20787204 1 + G T UCEC 20787204 + 20787184 20787224 41 AGCCTTCTGGTGGATCAACAGAAATGGAGAAGAGATGCGAT AGCCTTCTGGTGGATCAACATAAATGGAGAAGAGATGCGAT Direct Loss 0.953247198995705 0 NA NA prediction 0.90649439799141 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20787204 chr16:20787204 nonsynonymous SNV 0.966 1 21 hm7G_associated_SNPs_2955 0 0 1 0 1 ACSM3 chr16:20787161 3'AG 20787161 Downstream 44bp 2898 chr2 26663323 26663323 1 + G C CESC 26663323 + 26663303 26663343 41 TTAGAGTACAACTTGCAGGTGCTGAAGAAGAGAGATGAAGA TTAGAGTACAACTTGCAGGTCCTGAAGAAGAGAGATGAAGA Direct Loss 0.953238888552702 0 NA NA prediction 0.906477777105403 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26663323 chr2:26663323 synonymous SNV . 0 21 hm7G_associated_SNPs_2956 0 0 0 0 2 DRC1 chr2:26663246 3'AG 26663246 Downstream 78bp 2899 chr2 26663323 26663323 1 + G C CESC 26663323 + 26663303 26663343 41 TTAGAGTACAACTTGCAGGTGCTGAAGAAGAGAGATGAAGA TTAGAGTACAACTTGCAGGTCCTGAAGAAGAGAGATGAAGA Direct Loss 0.953238888552702 0 NA NA prediction 0.906477777105403 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26663323 chr2:26663323 synonymous SNV . 0 21 hm7G_associated_SNPs_2956 0 0 0 0 2 DRC1 chr2:26663385 5'GT 26663385 Upstream 63bp 2900 chrX 37665699 37665699 1 + G A STAD 37665699 + 37665679 37665719 41 GAGTGGTTTGCAGATCTGCTGCAACTGCTGGAGAGCCAGAT GAGTGGTTTGCAGATCTGCTACAACTGCTGGAGAGCCAGAT Direct Loss 0.953230693297163 0 NA NA prediction 0.906461386594326 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37665699 chrX:37665699 synonymous SNV . 0 21 hm7G_associated_SNPs_2957 0 0 0 0 2 CYBB chrX:37665640 3'AG 37665640 Downstream 60bp 2901 chrX 37665699 37665699 1 + G A STAD 37665699 + 37665679 37665719 41 GAGTGGTTTGCAGATCTGCTGCAACTGCTGGAGAGCCAGAT GAGTGGTTTGCAGATCTGCTACAACTGCTGGAGAGCCAGAT Direct Loss 0.953230693297163 0 NA NA prediction 0.906461386594326 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37665699 chrX:37665699 synonymous SNV . 0 21 hm7G_associated_SNPs_2957 0 0 0 0 2 CYBB chrX:37665786 5'GT 37665786 Upstream 88bp 2902 chr11 33079605 33079605 1 + G A CESC 33079605 + 33079585 33079625 41 GCAGAATTCATTATTGGCATGATGGGGACACTGTGTGCACC GCAGAATTCATTATTGGCATAATGGGGACACTGTGTGCACC Direct Loss 0.953220168671317 0 NA NA prediction 0.906440337342634 Functional Loss - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33079605 chr11:33079605 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_2959 0 0 1 0 1 TCP11L1 chr11:33079685 5'GT 33079685 Upstream 81bp 2903 chr5 150407039 150407039 1 + G C BLCA 150407039 + 150407019 150407059 41 TCCCTAATTTCCAGCTCTTTGAGAAAGGGGATGTCAATGGA TCCCTAATTTCCAGCTCTTTCAGAAAGGGGATGTCAATGGA Direct Loss 0.953219869442032 0 NA NA prediction 0.906439738884065 Functional Loss - GPX3 ENSG00000211445 CDS Human protein_coding chr5:150407039 chr5:150407039 unknown 1.000 1 21 hm7G_associated_SNPs_2960 0 0 1 1 2 GPX3 chr5:150406993 3'AG 150406993 Downstream 47bp 2904 chr5 150407039 150407039 1 + G C BLCA 150407039 + 150407019 150407059 41 TCCCTAATTTCCAGCTCTTTGAGAAAGGGGATGTCAATGGA TCCCTAATTTCCAGCTCTTTCAGAAAGGGGATGTCAATGGA Direct Loss 0.953219869442032 0 NA NA prediction 0.906439738884065 Functional Loss - GPX3 ENSG00000211445 CDS Human protein_coding chr5:150407039 chr5:150407039 unknown 1.000 1 21 hm7G_associated_SNPs_2960 0 0 1 1 2 GPX3 chr5:150407092 5'GT 150407092 Upstream 54bp 2905 chr15 44085183 44085183 1 + G T SARC 44085183 + 44085163 44085203 41 CTTTCCTTAGGCGGTAACCAGCGTGAGCTCGCCCGCCAGAA CTTTCCTTAGGCGGTAACCATCGTGAGCTCGCCCGCCAGAA Direct Loss 0.953213971558528 0 NA NA prediction 0.906427943117056 Functional Loss - SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085183 chr15:44085183 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2961 0 0 1 0 2 SERF2 chr15:44085173 3'AG 44085173 Downstream 11bp 2906 chr15 44085183 44085183 1 + G T SARC 44085183 + 44085163 44085203 41 CTTTCCTTAGGCGGTAACCAGCGTGAGCTCGCCCGCCAGAA CTTTCCTTAGGCGGTAACCATCGTGAGCTCGCCCGCCAGAA Direct Loss 0.953213971558528 0 NA NA prediction 0.906427943117056 Functional Loss - SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085183 chr15:44085183 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_2961 0 0 1 0 2 SERF2 chr15:44085281 5'GT 44085281 Upstream 99bp 2907 chr1 152671385 152671385 1 + G A rs80271068 152671385 + 152671365 152671405 41 AAGTCGCACTGAGATGTCCTGCCAGCAAAACCAGCAGCAGT AAGTCGCACTGAGATGTCCTACCAGCAAAACCAGCAGCAGT Direct Loss 0.953209071466259 0 NA NA prediction 0.906418142932518 Functional Loss - LCE2A ENSG00000187173 CDS Human protein_coding chr1:152671385 chr1:152671385 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_2962 0 0 0 0 1 LCE2A chr1:152671358 3'AG 152671358 Downstream 28bp 2908 chr7 24329122 24329122 1 + G A SKCM 24329122 + 24329102 24329142 41 ACTTTTTTTTTTCCAGATATGGAAAACGATCCAGCCCAGAG ACTTTTTTTTTTCCAGATATAGAAAACGATCCAGCCCAGAG Direct Loss 0.953199454419764 0 NA NA prediction 0.906398908839527 Functional Loss - NPY ENSG00000122585 CDS Human protein_coding chr7:24329122 chr7:24329122 nonsynonymous SNV 0.765 4 21 hm7G_associated_SNPs_2963 0 0 0 0 2 NPY chr7:24329118 3'AG 24329118 Downstream 5bp 2909 chr7 24329122 24329122 1 + G A SKCM 24329122 + 24329102 24329142 41 ACTTTTTTTTTTCCAGATATGGAAAACGATCCAGCCCAGAG ACTTTTTTTTTTCCAGATATAGAAAACGATCCAGCCCAGAG Direct Loss 0.953199454419764 0 NA NA prediction 0.906398908839527 Functional Loss - NPY ENSG00000122585 CDS Human protein_coding chr7:24329122 chr7:24329122 nonsynonymous SNV 0.765 4 21 hm7G_associated_SNPs_2963 0 0 0 0 2 NPY chr7:24329198 5'GT 24329198 Upstream 77bp 2910 chr17 74733003 74733003 1 - C G LUAD 74733003 - 74732983 74733023 41 GCCATGGACGGGGCCGTGCTGGACGGCCGCGAGCTGCGGGT GCCATGGACGGGGCCGTGCTCGACGGCCGCGAGCTGCGGGT Direct Loss 0.953186871169899 0 NA NA prediction 0.906373742339799 Functional Loss - SRSF2 ENSG00000161547 CDS Human protein_coding chr17:74733003 chr17:74733003 synonymous SNV . 0 21 hm7G_associated_SNPs_2964 0 0 1 0 1 SRSF2 chr17:74732917 5'GT 74732917 Upstream 87bp 2911 chr19 12800031 12800031 1 - C T CESC 12800031 - 12800011 12800051 41 GGTCTGGAGGCTGCAGGCCTGAGCAGGTGGGCGTGGATGTG GGTCTGGAGGCTGCAGGCCTAAGCAGGTGGGCGTGGATGTG Direct Loss 0.953185723587322 0 NA NA prediction 0.906371447174644 Functional Loss - FBXW9 ENSG00000132004 CDS Human protein_coding chr19:12800031 chr19:12800031 synonymous SNV . 0 21 hm7G_associated_SNPs_2965 0 0 1 0 1 FBXW9 chr19:12800104 3'AG 12800104 Downstream 74bp 2912 chr15 52497133 52497133 1 + G A SKCM 52497133 + 52497113 52497153 41 CTGTTCAGCGTGACCGCCCCGATCAAGAAGAAGAGCTGCTT CTGTTCAGCGTGACCGCCCCAATCAAGAAGAAGAGCTGCTT Direct Loss 0.953174865160815 0 NA NA prediction 0.906349730321631 Functional Loss - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497133 chr15:52497133 synonymous SNV . 0 21 hm7G_associated_SNPs_2966 0 0 0 0 1 MYO5C chr15:52497086 3'AG 52497086 Downstream 48bp 2913 chr11 66838917 66838917 1 + G T GBM 66838917 + 66838897 66838937 41 TCCCTCTAGGGCCAGGAGATGGCGAGGTCCGTGGGCGCGGT TCCCTCTAGGGCCAGGAGATTGCGAGGTCCGTGGGCGCGGT Direct Loss 0.953161634392416 0 NA NA prediction 0.906323268784832 Functional Loss - RHOD ENSG00000173156 CDS Human protein_coding chr11:66838917 chr11:66838917 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_2969 0 0 0 0 1 RHOD chr11:66838906 3'AG 66838906 Downstream 12bp 2914 chr19 42406443 42406443 1 + G A rs35481465 42406443 + 42406423 42406463 41 GCCCTGTTCCTCGATCGCCTGATGAAGCGGAGGCAGGAGAG GCCCTGTTCCTCGATCGCCTAATGAAGCGGAGGCAGGAGAG Direct Loss 0.953156345601713 0 NA NA prediction 0.906312691203427 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406443 chr19:42406443 synonymous SNV . 0 21 hm7G_associated_SNPs_2971 0 0 1 0 2 ARHGEF1 chr19:42406424 3'AG 42406424 Downstream 20bp 2915 chr19 42406443 42406443 1 + G A rs35481465 42406443 + 42406423 42406463 41 GCCCTGTTCCTCGATCGCCTGATGAAGCGGAGGCAGGAGAG GCCCTGTTCCTCGATCGCCTAATGAAGCGGAGGCAGGAGAG Direct Loss 0.953156345601713 0 NA NA prediction 0.906312691203427 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42406443 chr19:42406443 synonymous SNV . 0 21 hm7G_associated_SNPs_2971 0 0 1 0 2 ARHGEF1 chr19:42406506 5'GT 42406506 Upstream 64bp 2916 chr10 88728331 88728331 1 + G T LGG 88728331 + 88728311 88728351 41 AAGGGCTTGCAGGACCTGAAGCAACAGGTGGAGGGGACCGC AAGGGCTTGCAGGACCTGAATCAACAGGTGGAGGGGACCGC Direct Loss 0.953155172727133 0 NA NA prediction 0.906310345454266 Functional Loss - ADIRF ENSG00000148671 CDS Human protein_coding chr10:88728331 chr10:88728331 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_2972 0 0 0 0 1 ADIRF chr10:88728362 5'GT 88728362 Upstream 32bp 2917 chr1 39494450 39494450 1 + G C HNSC 39494450 + 39494430 39494470 41 CTTAACATAGATCGATGGTTGACAATCCAGAGTGGTGAACA CTTAACATAGATCGATGGTTCACAATCCAGAGTGGTGAACA Direct Loss 0.953139931984418 0 NA NA prediction 0.906279863968836 Functional Loss - NDUFS5 ENSG00000168653 CDS Human protein_coding chr1:39494450 chr1:39494450 nonsynonymous SNV 0.010 0 21 hm7G_associated_SNPs_2973 0 0 1 0 1 NDUFS5 chr1:39494395 3'AG 39494395 Downstream 56bp 2918 chr1 152944426 152944426 1 + G T LIHC 152944426 + 152944406 152944446 41 CCACCCCAGAGGGCCCAGCAGCAGCAAGTGAAGCAGCCTTG CCACCCCAGAGGGCCCAGCATCAGCAAGTGAAGCAGCCTTG Direct Loss 0.953133737888788 0 NA NA prediction 0.906267475777576 Functional Loss - SPRR4 ENSG00000184148 CDS Human protein_coding chr1:152944426 chr1:152944426 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_2974 0 0 0 0 1 SPRR4 chr1:152944347 3'AG 152944347 Downstream 80bp 2919 chr15 72958220 72958220 1 + G A SKCM 72958220 + 72958200 72958240 41 CTGGCCCAGAAGGAGGAGGAGATGAAGGTAGGGCGTGCAAC CTGGCCCAGAAGGAGGAGGAAATGAAGGTAGGGCGTGCAAC Direct Loss 0.953124984596389 0 NA NA prediction 0.906249969192778 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72958220 chr15:72958220 synonymous SNV . 0 21 hm7G_associated_SNPs_2975 0 0 0 0 2 GOLGA6B chr15:72958123 3'AG 72958123 Downstream 98bp 2920 chr15 72958220 72958220 1 + G A SKCM 72958220 + 72958200 72958240 41 CTGGCCCAGAAGGAGGAGGAGATGAAGGTAGGGCGTGCAAC CTGGCCCAGAAGGAGGAGGAAATGAAGGTAGGGCGTGCAAC Direct Loss 0.953124984596389 0 NA NA prediction 0.906249969192778 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72958220 chr15:72958220 synonymous SNV . 0 21 hm7G_associated_SNPs_2975 0 0 0 0 2 GOLGA6B chr15:72958226 5'GT 72958226 Upstream 7bp 2921 chr17 73016694 73016694 1 + G A BLCA 73016694 + 73016674 73016714 41 AAATTCGAGACATGATCACTGAGGCCAGCCAGACACCGAAG AAATTCGAGACATGATCACTAAGGCCAGCCAGACACCGAAG Direct Loss 0.953123401587265 0 NA NA prediction 0.906246803174531 Functional Loss - MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73016694 chr17:73016694 nonsynonymous SNV 0.656 0 21 hm7G_associated_SNPs_2976 0 0 1 0 1 MRPL58 chr17:73016752 5'GT 73016752 Upstream 59bp 2922 chr10 94452486 94452486 1 + G A UCEC 94452486 + 94452466 94452506 41 CCTGGTTTCAGAATCGACGCGCTAAATGGAGGAGACTAAAA CCTGGTTTCAGAATCGACGCACTAAATGGAGGAGACTAAAA Direct Loss 0.953101974091176 0 NA NA prediction 0.906203948182352 Functional Loss - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452486 chr10:94452486 nonsynonymous SNV 0.990 5 21 hm7G_associated_SNPs_2979 0 0 1 0 2 HHEX chr10:94452459 3'AG 94452459 Downstream 28bp 2923 chr10 94452486 94452486 1 + G A UCEC 94452486 + 94452466 94452506 41 CCTGGTTTCAGAATCGACGCGCTAAATGGAGGAGACTAAAA CCTGGTTTCAGAATCGACGCACTAAATGGAGGAGACTAAAA Direct Loss 0.953101974091176 0 NA NA prediction 0.906203948182352 Functional Loss - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452486 chr10:94452486 nonsynonymous SNV 0.990 5 21 hm7G_associated_SNPs_2979 0 0 1 0 2 HHEX chr10:94452509 5'GT 94452509 Upstream 24bp 2924 chr2 37474691 37474691 1 + G T COAD 37474691 + 37474671 37474711 41 TTCAGTTATTTGCGAAGAATGGCACAGGGAAAAGTAGCCTC TTCAGTTATTTGCGAAGAATTGCACAGGGAAAAGTAGCCTC Direct Loss 0.953090732015835 0 NA NA prediction 0.90618146403167 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37474691 chr2:37474691 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_2981 0 0 1 1 1 NDUFAF7 chr2:37474599 3'AG 37474599 Downstream 93bp 2925 chr2 70033579 70033579 1 + G T ESCA 70033579 + 70033559 70033599 41 GAGCAGGTGATTGTGGGGATGATGACGCCCACGGTGCTGTA GAGCAGGTGATTGTGGGGATTATGACGCCCACGGTGCTGTA Direct Loss 0.953086732231278 0 NA NA prediction 0.906173464462556 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70033579 chr2:70033579 nonsynonymous SNV 0.987 2 21 hm7G_associated_SNPs_2983 0 0 1 0 2 ANXA4 chr2:70033517 3'AG 70033517 Downstream 63bp 2926 chr2 70033579 70033579 1 + G T ESCA 70033579 + 70033559 70033599 41 GAGCAGGTGATTGTGGGGATGATGACGCCCACGGTGCTGTA GAGCAGGTGATTGTGGGGATTATGACGCCCACGGTGCTGTA Direct Loss 0.953086732231278 0 NA NA prediction 0.906173464462556 Functional Loss - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70033579 chr2:70033579 nonsynonymous SNV 0.987 2 21 hm7G_associated_SNPs_2983 0 0 1 0 2 ANXA4 chr2:70033630 5'GT 70033630 Upstream 52bp 2927 chr5 169535345 169535345 1 + G T LUAD 169535345 + 169535325 169535365 41 TCCTCTATGACAGCCTATGTGAGCGGGGGGAGCCCCACGAG TCCTCTATGACAGCCTATGTTAGCGGGGGGAGCCCCACGAG Direct Loss 0.95308361720769 0 NA NA prediction 0.906167234415381 Functional Loss - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535345 chr5:169535345 synonymous SNV . 0 21 hm7G_associated_SNPs_2984 0 0 0 0 1 FOXI1 chr5:169535338 3'AG 169535338 Downstream 8bp 2928 chr11 94039857 94039857 1 + G A PRAD 94039857 + 94039837 94039877 41 CTCCCCAAACCTGGGGCCCTGGATCCAGCCAGTGGGAAGCC CTCCCCAAACCTGGGGCCCTAGATCCAGCCAGTGGGAAGCC Direct Loss 0.953076198706871 0 NA NA prediction 0.906152397413743 Functional Loss - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94039857 chr11:94039857 stopgain 0.993 1 21 hm7G_associated_SNPs_2985 0 0 0 0 1 IZUMO1R chr11:94039888 5'GT 94039888 Upstream 32bp 2929 chr19 52327032 52327032 1 + G A HNSC 52327032 + 52327012 52327052 41 ACTTCTCCATTCCTCTGAATGAAACTGAGGAGGTGCTCCCT ACTTCTCCATTCCTCTGAATAAAACTGAGGAGGTGCTCCCT Direct Loss 0.953075024318264 0 NA NA prediction 0.906150048636527 Functional Loss - FPR3 ENSG00000187474 CDS Human protein_coding chr19:52327032 chr19:52327032 nonsynonymous SNV 0.144 0 21 hm7G_associated_SNPs_2986 0 0 0 0 1 FPR3 chr19:52326992 3'AG 52326992 Downstream 41bp 2930 chr3 111730620 111730620 1 + G A BLCA 111730620 + 111730600 111730640 41 TGGCTTCCAGGGAAGGACATGGCAGCTGTGCAGAGGACCCT TGGCTTCCAGGGAAGGACATAGCAGCTGTGCAGAGGACCCT Direct Loss 0.953038963543485 0 NA NA prediction 0.906077927086971 Functional Loss - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111730620 chr3:111730620 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2987 0 0 0 0 2 TAGLN3 chr3:111730610 3'AG 111730610 Downstream 11bp 2931 chr3 111730620 111730620 1 + G A BLCA 111730620 + 111730600 111730640 41 TGGCTTCCAGGGAAGGACATGGCAGCTGTGCAGAGGACCCT TGGCTTCCAGGGAAGGACATAGCAGCTGTGCAGAGGACCCT Direct Loss 0.953038963543485 0 NA NA prediction 0.906077927086971 Functional Loss - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111730620 chr3:111730620 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_2987 0 0 0 0 2 TAGLN3 chr3:111730712 5'GT 111730712 Upstream 93bp 2932 chr15 63889848 63889848 1 + G A UCEC 63889848 + 63889828 63889868 41 CTCCAGCCGCGTGCAGGTGTGCAGCATTGAGGACTGGCTCA CTCCAGCCGCGTGCAGGTGTACAGCATTGAGGACTGGCTCA Direct Loss 0.95303219054799 0 NA NA prediction 0.906064381095981 Functional Loss - FBXL22 ENSG00000197361 CDS Human protein_coding chr15:63889848 chr15:63889848 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_2988 0 0 0 0 1 FBXL22 chr15:63889944 5'GT 63889944 Upstream 97bp 2933 chr10 26792173 26792173 1 + G A SKCM 26792173 + 26792153 26792193 41 GATAAAATTAAGCTGGCGCTGGAAAAACTGAAGGAGGCCAA GATAAAATTAAGCTGGCGCTAGAAAAACTGAAGGAGGCCAA Direct Loss 0.952991621837258 0 NA NA prediction 0.905983243674517 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26792173 chr10:26792173 synonymous SNV . 0 21 hm7G_associated_SNPs_2993 0 0 0 0 2 APBB1IP chr10:26792126 3'AG 26792126 Downstream 48bp 2934 chr10 26792173 26792173 1 + G A SKCM 26792173 + 26792153 26792193 41 GATAAAATTAAGCTGGCGCTGGAAAAACTGAAGGAGGCCAA GATAAAATTAAGCTGGCGCTAGAAAAACTGAAGGAGGCCAA Direct Loss 0.952991621837258 0 NA NA prediction 0.905983243674517 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26792173 chr10:26792173 synonymous SNV . 0 21 hm7G_associated_SNPs_2993 0 0 0 0 2 APBB1IP chr10:26792203 5'GT 26792203 Upstream 31bp 2935 chr15 90274768 90274768 1 + G A COAD 90274768 + 90274748 90274788 41 CTGGCCTGCGAGGATGGTGTGCTCACGCTGTGGGACCTGGC CTGGCCTGCGAGGATGGTGTACTCACGCTGTGGGACCTGGC Direct Loss 0.952956373194137 0 NA NA prediction 0.905912746388275 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90274768 chr15:90274768 synonymous SNV . 0 21 hm7G_associated_SNPs_2994 0 0 0 0 2 WDR93 chr15:90274674 3'AG 90274674 Downstream 95bp 2936 chr15 90274768 90274768 1 + G A COAD 90274768 + 90274748 90274788 41 CTGGCCTGCGAGGATGGTGTGCTCACGCTGTGGGACCTGGC CTGGCCTGCGAGGATGGTGTACTCACGCTGTGGGACCTGGC Direct Loss 0.952956373194137 0 NA NA prediction 0.905912746388275 Functional Loss - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90274768 chr15:90274768 synonymous SNV . 0 21 hm7G_associated_SNPs_2994 0 0 0 0 2 WDR93 chr15:90274793 5'GT 90274793 Upstream 26bp 2937 chr19 12923911 12923911 1 + G T SARC 12923911 + 12923891 12923931 41 CCCCAGATCCCAAGACAAAAGCGTGGTTGAAGGAGCACGTG CCCCAGATCCCAAGACAAAATCGTGGTTGAAGGAGCACGTG Direct Loss 0.952953966377658 0 NA NA prediction 0.905907932755315 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12923911 chr19:12923911 nonsynonymous SNV 0.905 1 21 hm7G_associated_SNPs_2995 0 0 1 0 1 RNASEH2A chr19:12923897 3'AG 12923897 Downstream 15bp 2938 chr7 154875947 154875947 1 + G T LUSC 154875947 + 154875927 154875967 41 CCAGCCAGAAGGGGACACGTGGCGGGAGCAGAAGGAGCAGC CCAGCCAGAAGGGGACACGTTGCGGGAGCAGAAGGAGCAGC Direct Loss 0.952940860006177 0 NA NA prediction 0.905881720012354 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154875947 chr7:154875947 nonsynonymous SNV 0.900 0 21 hm7G_associated_SNPs_2996 0 0 0 0 1 HTR5A chr7:154875865 3'AG 154875865 Downstream 83bp 2939 chr1 75614290 75614290 1 + G T SARC 75614290 + 75614270 75614310 41 AGGTTATGCAAGCACAATTTGCTCAGGACAACAACCCAGAT AGGTTATGCAAGCACAATTTTCTCAGGACAACAACCCAGAT Direct Loss 0.952940559885246 0 NA NA prediction 0.905881119770493 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75614290 chr1:75614290 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2997 0 0 1 0 2 LHX8 chr1:75614272 3'AG 75614272 Downstream 19bp 2940 chr1 75614290 75614290 1 + G T SARC 75614290 + 75614270 75614310 41 AGGTTATGCAAGCACAATTTGCTCAGGACAACAACCCAGAT AGGTTATGCAAGCACAATTTTCTCAGGACAACAACCCAGAT Direct Loss 0.952940559885246 0 NA NA prediction 0.905881119770493 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75614290 chr1:75614290 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_2997 0 0 1 0 2 LHX8 chr1:75614367 5'GT 75614367 Upstream 78bp 2941 chr8 37996551 37996551 1 + G A BRCA 37996551 + 37996531 37996571 41 TCTTGTATCACGTGGAGACAGAAGTGGATGGGAGGCGCAGT TCTTGTATCACGTGGAGACAAAAGTGGATGGGAGGCGCAGT Direct Loss 0.952938269657224 0 NA NA prediction 0.905876539314449 Functional Loss - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37996551 chr8:37996551 nonsynonymous SNV 0.964 1 21 hm7G_associated_SNPs_2998 0 0 1 0 1 ASH2L chr8:37996482 3'AG 37996482 Downstream 70bp 2942 chr14 68112513 68112513 1 + G T UCEC 68112513 + 68112493 68112533 41 TTTCTCCTCAGAGAACTACAGGATAAGGTCAGTGGGCCAAA TTTCTCCTCAGAGAACTACATGATAAGGTCAGTGGGCCAAA Direct Loss 0.952932752121619 0 NA NA prediction 0.905865504243239 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68112513 chr14:68112513 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_2999 0 0 1 0 1 ARG2 chr14:68112519 5'GT 68112519 Upstream 7bp 2943 chr2 74141919 74141919 1 + G A UCEC 74141919 + 74141899 74141939 41 TCCCTGGAGAAGAGCTATGAGCTGCCAGATGGGCAGGTTAT TCCCTGGAGAAGAGCTATGAACTGCCAGATGGGCAGGTTAT Direct Loss 0.952923466402407 0 NA NA prediction 0.905846932804813 Functional Loss - ACTG2 ENSG00000163017 CDS Human protein_coding chr2:74141919 chr2:74141919 synonymous SNV . 0 21 hm7G_associated_SNPs_3001 0 0 0 0 1 ACTG2 chr2:74141998 5'GT 74141998 Upstream 80bp 2944 chr6 112421937 112421937 1 + G A rs587759646 112421937 + 112421917 112421957 41 ATGTTCCCGTCACTGTTTATGCAACAACGAGAAAGCCACCT ATGTTCCCGTCACTGTTTATACAACAACGAGAAAGCCACCT Direct Loss 0.952915244922378 0 NA NA prediction 0.905830489844756 Functional Loss - FAM229B ENSG00000203778 CDS Human protein_coding chr6:112421937 chr6:112421937 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3002 0 0 1 0 1 FAM229B chr6:112421873 3'AG 112421873 Downstream 65bp 2945 chr11 66373005 66373005 1 + G T BRCA 66373005 + 66372985 66373025 41 TGATTATTGATGAGGGAGAAGATGACCTGGGCCGGGGAGGC TGATTATTGATGAGGGAGAATATGACCTGGGCCGGGGAGGC Direct Loss 0.952887444588297 0 NA NA prediction 0.905774889176594 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66373005 chr11:66373005 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3004 0 0 1 0 2 CCS chr11:66372960 3'AG 66372960 Downstream 46bp 2946 chr11 66373005 66373005 1 + G T BRCA 66373005 + 66372985 66373025 41 TGATTATTGATGAGGGAGAAGATGACCTGGGCCGGGGAGGC TGATTATTGATGAGGGAGAATATGACCTGGGCCGGGGAGGC Direct Loss 0.952887444588297 0 NA NA prediction 0.905774889176594 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66373005 chr11:66373005 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3004 0 0 1 0 2 CCS chr11:66373063 5'GT 66373063 Upstream 59bp 2947 chr6 35436624 35436624 1 + G A rs376795337 35436624 + 35436604 35436644 41 GAGGCGGTGCGGGAAGTCCTGCACGGGAACCAGCGCAAGCG GAGGCGGTGCGGGAAGTCCTACACGGGAACCAGCGCAAGCG Direct Loss 0.952881445928974 0 NA NA prediction 0.905762891857948 Functional Loss - RPL10A ENSG00000198755 CDS Human protein_coding chr6:35436624 chr6:35436624 synonymous SNV . 0 21 hm7G_associated_SNPs_3005 0 0 1 0 1 RPL10A chr6:35436650 5'GT 35436650 Upstream 27bp 2948 chr17 46058084 46058084 1 + G A rs370631756 46058084 + 46058064 46058104 41 AAAGAGAAGATGGTTACCATGGTGTCAGTGCTGGAGGATCT AAAGAGAAGATGGTTACCATAGTGTCAGTGCTGGAGGATCT Direct Loss 0.952873349792818 0 NA NA prediction 0.905746699585635 Functional Loss - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46058084 chr17:46058084 nonsynonymous SNV 0.957 2 21 hm7G_associated_SNPs_3007 0 0 1 0 1 CDK5RAP3 chr17:46058164 5'GT 46058164 Upstream 81bp 2949 chr11 9749698 9749698 1 + G C HNSC 9749698 + 9749678 9749718 41 TACTATGTGAGTGAGGATCTGAAGGATAAGAAAGGAGACAT TACTATGTGAGTGAGGATCTCAAGGATAAGAAAGGAGACAT Direct Loss 0.952871076288367 0 NA NA prediction 0.905742152576734 Functional Loss - SWAP70 ENSG00000133789 CDS Human protein_coding chr11:9749698 chr11:9749698 synonymous SNV . 0 21 hm7G_associated_SNPs_3008 0 0 1 0 1 SWAP70 chr11:9749746 5'GT 9749746 Upstream 49bp 2950 chrX 11316680 11316680 1 + G A SKCM 11316680 + 11316660 11316700 41 CTCACCAGTACCCTTCCTATGGTTACGAGCCCATGGGTGGA CTCACCAGTACCCTTCCTATAGTTACGAGCCCATGGGTGGA Direct Loss 0.952862925596824 0 NA NA prediction 0.905725851193648 Functional Loss - AMELX ENSG00000125363 CDS Human protein_coding chrX:11316680 chrX:11316680 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3009 0 0 0 0 1 AMELX chrX:11316668 3'AG 11316668 Downstream 13bp 2951 chr5 52779380 52779380 1 + G A SKCM 52779380 + 52779360 52779400 41 CCTGGGAAAAAATGCCGAATGAACAAGAAGAACAAACCCCG CCTGGGAAAAAATGCCGAATAAACAAGAAGAACAAACCCCG Direct Loss 0.952837898284697 0 NA NA prediction 0.905675796569395 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52779380 chr5:52779380 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3013 0 0 0 0 1 FST chr5:52779334 3'AG 52779334 Downstream 47bp 2952 chr11 65836165 65836165 1 + G T SARC 65836165 + 65836145 65836185 41 CAAAAAAAACGGAAAGCTCAGCCCCAGGACAGCCGTGGGGG CAAAAAAAACGGAAAGCTCATCCCCAGGACAGCCGTGGGGG Direct Loss 0.952833837401738 0 NA NA prediction 0.905667674803477 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65836165 chr11:65836165 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3014 0 0 1 0 1 SF3B2 chr11:65836145 3'AG 65836145 Downstream 21bp 2953 chr16 57003334 57003334 1 + G A SKCM 57003334 + 57003314 57003354 41 TTGTCCATCGCCAGCAGCCAGGTGGAGCTGGTGGAAGCCAA TTGTCCATCGCCAGCAGCCAAGTGGAGCTGGTGGAAGCCAA Direct Loss 0.952796429172623 0 NA NA prediction 0.905592858345246 Functional Loss - CETP ENSG00000087237 CDS Human protein_coding chr16:57003334 chr16:57003334 synonymous SNV . 0 21 hm7G_associated_SNPs_3016 0 0 0 0 2 CETP chr16:57003298 3'AG 57003298 Downstream 37bp 2954 chr16 57003334 57003334 1 + G A SKCM 57003334 + 57003314 57003354 41 TTGTCCATCGCCAGCAGCCAGGTGGAGCTGGTGGAAGCCAA TTGTCCATCGCCAGCAGCCAAGTGGAGCTGGTGGAAGCCAA Direct Loss 0.952796429172623 0 NA NA prediction 0.905592858345246 Functional Loss - CETP ENSG00000087237 CDS Human protein_coding chr16:57003334 chr16:57003334 synonymous SNV . 0 21 hm7G_associated_SNPs_3016 0 0 0 0 2 CETP chr16:57003432 5'GT 57003432 Upstream 99bp 2955 chr7 97362003 97362003 1 + G T LUSC 97362003 + 97361983 97362023 41 AAGAAATAGGAGCCAATGATGATCTGAATTACTGGTCCGAC AAGAAATAGGAGCCAATGATTATCTGAATTACTGGTCCGAC Direct Loss 0.952792832683368 0 NA NA prediction 0.905585665366736 Functional Loss - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97362003 chr7:97362003 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_3017 0 0 0 0 2 TAC1 chr7:97361916 3'AG 97361916 Downstream 88bp 2956 chr7 97362003 97362003 1 + G T LUSC 97362003 + 97361983 97362023 41 AAGAAATAGGAGCCAATGATGATCTGAATTACTGGTCCGAC AAGAAATAGGAGCCAATGATTATCTGAATTACTGGTCCGAC Direct Loss 0.952792832683368 0 NA NA prediction 0.905585665366736 Functional Loss - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97362003 chr7:97362003 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_3017 0 0 0 0 2 TAC1 chr7:97362047 5'GT 97362047 Upstream 45bp 2957 chr12 112235947 112235947 1 + G T UCEC 112235947 + 112235927 112235967 41 GGGAAGCAAGAGGGGGCGAAGCTGCTGTGTGGTGGGGGCAT GGGAAGCAAGAGGGGGCGAATCTGCTGTGTGGTGGGGGCAT Direct Loss 0.952787443473999 0 NA NA prediction 0.905574886947998 Functional Loss - ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112235947 chr12:112235947 nonsynonymous SNV 0.984 2 21 hm7G_associated_SNPs_3018 0 0 1 0 2 ALDH2 chr12:112235882 3'AG 112235882 Downstream 66bp 2958 chr12 112235947 112235947 1 + G T UCEC 112235947 + 112235927 112235967 41 GGGAAGCAAGAGGGGGCGAAGCTGCTGTGTGGTGGGGGCAT GGGAAGCAAGAGGGGGCGAATCTGCTGTGTGGTGGGGGCAT Direct Loss 0.952787443473999 0 NA NA prediction 0.905574886947998 Functional Loss - ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112235947 chr12:112235947 nonsynonymous SNV 0.984 2 21 hm7G_associated_SNPs_3018 0 0 1 0 2 ALDH2 chr12:112236046 5'GT 112236046 Upstream 100bp 2959 chr12 56862935 56862935 1 + G T UCEC 56862935 + 56862915 56862955 41 GAGCCCACCAAGGTGGCCTTGAATGTGGAGCGCTTCCGGGA GAGCCCACCAAGGTGGCCTTTAATGTGGAGCGCTTCCGGGA Direct Loss 0.95277371605436 0 NA NA prediction 0.905547432108721 Functional Loss - SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56862935 chr12:56862935 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_3020 0 0 1 0 1 SPRYD4 chr12:56862955 5'GT 56862955 Upstream 21bp 2960 chr2 27522284 27522284 1 + G A UCEC 27522284 + 27522264 27522304 41 ACCATTTACAAACGCCAGAAGGTATCAAACAGGGGAGGGAG ACCATTTACAAACGCCAGAAAGTATCAAACAGGGGAGGGAG Direct Loss 0.952764707972458 0 NA NA prediction 0.905529415944915 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27522284 chr2:27522284 synonymous SNV . 0 21 hm7G_associated_SNPs_3022 0 0 0 0 1 TRIM54 chr2:27522284 5'GT 27522284 Upstream 1bp 2961 chr6 131900261 131900261 1 + G A SKCM 131900261 + 131900241 131900281 41 TTAATTTTAGAGTGTGATGTGAAGGATTATGGGGACCTGCC TTAATTTTAGAGTGTGATGTAAAGGATTATGGGGACCTGCC Direct Loss 0.952763360919743 0 NA NA prediction 0.905526721839486 Functional Loss - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900261 chr6:131900261 synonymous SNV . 0 21 hm7G_associated_SNPs_3023 0 0 0 0 2 ARG1 chr6:131900227 3'AG 131900227 Downstream 35bp 2962 chr6 131900261 131900261 1 + G A SKCM 131900261 + 131900241 131900281 41 TTAATTTTAGAGTGTGATGTGAAGGATTATGGGGACCTGCC TTAATTTTAGAGTGTGATGTAAAGGATTATGGGGACCTGCC Direct Loss 0.952763360919743 0 NA NA prediction 0.905526721839486 Functional Loss - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900261 chr6:131900261 synonymous SNV . 0 21 hm7G_associated_SNPs_3023 0 0 0 0 2 ARG1 chr6:131900251 3'AG 131900251 Downstream 11bp 2963 chr2 55747049 55747049 1 + G A HNSC 55747049 + 55747029 55747069 41 ACTTTGTGGAACAGAAATGTGAAGGTAAAAACCAGAGCCCG ACTTTGTGGAACAGAAATGTAAAGGTAAAAACCAGAGCCCG Direct Loss 0.952760357011571 0 NA NA prediction 0.905520714023142 Functional Loss - CFAP36 ENSG00000163001 CDS Human protein_coding chr2:55747049 chr2:55747049 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_3024 0 0 0 0 1 CFAP36 chr2:55747052 5'GT 55747052 Upstream 4bp 2964 chr19 3918841 3918841 1 + G C HNSC 3918841 + 3918821 3918861 41 AGTTTGTGCTGCCCAGGTCTGAAGAGAAGCCAGAGGTGGCA AGTTTGTGCTGCCCAGGTCTCAAGAGAAGCCAGAGGTGGCA Direct Loss 0.952746341350399 0 NA NA prediction 0.905492682700797 Functional Loss - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3918841 chr19:3918841 nonsynonymous SNV 0.451 0 21 hm7G_associated_SNPs_3026 0 0 0 0 2 ATCAY chr19:3918804 3'AG 3918804 Downstream 38bp 2965 chr19 3918841 3918841 1 + G C HNSC 3918841 + 3918821 3918861 41 AGTTTGTGCTGCCCAGGTCTGAAGAGAAGCCAGAGGTGGCA AGTTTGTGCTGCCCAGGTCTCAAGAGAAGCCAGAGGTGGCA Direct Loss 0.952746341350399 0 NA NA prediction 0.905492682700797 Functional Loss - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3918841 chr19:3918841 nonsynonymous SNV 0.451 0 21 hm7G_associated_SNPs_3026 0 0 0 0 2 ATCAY chr19:3918875 5'GT 3918875 Upstream 35bp 2966 chr9 80923345 80923345 1 + G T GBM 80923345 + 80923325 80923365 41 TTAAGTTTGGTGTGATTTTTGCTGGTGCCCAGAAGAATGTT TTAAGTTTGGTGTGATTTTTTCTGGTGCCCAGAAGAATGTT Direct Loss 0.952744607994147 0 NA NA prediction 0.905489215988295 Functional Loss - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80923345 chr9:80923345 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3027 0 0 1 0 1 PSAT1 chr9:80923330 3'AG 80923330 Downstream 16bp 2967 chr20 9497008 9497008 1 + G T UCEC 9497008 + 9496988 9497028 41 ACTTCAAAGACGCAGTCAGTGGTGAGTGGAGGCTGGCATGG ACTTCAAAGACGCAGTCAGTTGTGAGTGGAGGCTGGCATGG Direct Loss 0.952741064475518 0 NA NA prediction 0.905482128951035 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9497008 chr20:9497008 nonsynonymous SNV 0.908 0 21 hm7G_associated_SNPs_3028 0 0 0 0 1 LAMP5 chr20:9497008 5'GT 9497008 Upstream 1bp 2968 chr3 119445142 119445142 1 + G T LUAD 119445142 + 119445122 119445162 41 TTTGAGAAGAGGAGGAAAATGATGAATGAAATGGAGAGGAA TTTGAGAAGAGGAGGAAAATTATGAATGAAATGGAGAGGAA Direct Loss 0.952736062027294 0 NA NA prediction 0.905472124054588 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119445142 chr3:119445142 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_3029 0 0 0 0 1 MAATS1 chr3:119445195 5'GT 119445195 Upstream 54bp 2969 chr17 64873552 64873552 1 + G A rs11652480 64873552 + 64873532 64873572 41 GTCAGCACCGACTACTGGCTGTACCTGGAGGAGGGTGTGAT GTCAGCACCGACTACTGGCTATACCTGGAGGAGGGTGTGAT Direct Loss 0.952733311472935 0 NA NA prediction 0.905466622945871 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64873552 chr17:64873552 synonymous SNV . 0 21 hm7G_associated_SNPs_3030 0 0 0 0 1 CACNG5 chr17:64873646 5'GT 64873646 Upstream 95bp 2970 chr13 103326745 103326745 1 + G A SARC 103326745 + 103326725 103326765 41 ACGGAGCCATTTCCACTGATGCAGAAGGAAAGGAGGAGGAA ACGGAGCCATTTCCACTGATACAGAAGGAAAGGAGGAGGAA Direct Loss 0.952730069539707 0 NA NA prediction 0.905460139079415 Functional Loss - TPP2 ENSG00000134900 CDS Human protein_coding chr13:103326745 chr13:103326745 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_3031 0 0 1 0 1 TPP2 chr13:103326840 5'GT 103326840 Upstream 96bp 2971 chr1 26513716 26513716 1 + G A HNSC 26513716 + 26513696 26513736 41 ATAGTCTGGAAAGTGGACATGATCAGAAGAAGAAATAGTTA ATAGTCTGGAAAGTGGACATAATCAGAAGAAGAAATAGTTA Direct Loss 0.952713138442626 0 NA NA prediction 0.905426276885251 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26513716 chr1:26513716 nonsynonymous SNV 0.983 2 21 hm7G_associated_SNPs_3032 0 0 0 0 2 CNKSR1 chr1:26513659 3'AG 26513659 Downstream 58bp 2972 chr1 26513716 26513716 1 + G A HNSC 26513716 + 26513696 26513736 41 ATAGTCTGGAAAGTGGACATGATCAGAAGAAGAAATAGTTA ATAGTCTGGAAAGTGGACATAATCAGAAGAAGAAATAGTTA Direct Loss 0.952713138442626 0 NA NA prediction 0.905426276885251 Functional Loss - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26513716 chr1:26513716 nonsynonymous SNV 0.983 2 21 hm7G_associated_SNPs_3032 0 0 0 0 2 CNKSR1 chr1:26513732 5'GT 26513732 Upstream 17bp 2973 chr2 189859285 189859285 1 + G T LUSC 189859285 + 189859265 189859305 41 AGGGTGAGCCTGGTAAGAATGGTGCCAAAGGAGAGCCCGGA AGGGTGAGCCTGGTAAGAATTGTGCCAAAGGAGAGCCCGGA Direct Loss 0.952710488818178 0 NA NA prediction 0.905420977636356 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189859285 chr2:189859285 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3033 0 0 0 0 1 COL3A1 chr2:189859320 5'GT 189859320 Upstream 36bp 2974 chr1 26595017 26595017 1 + G A UCEC 26595017 + 26594997 26595037 41 CAATAATTTGAAAAAGAAATGCCAGAAGGAATCAGAGCAGA CAATAATTTGAAAAAGAAATACCAGAAGGAATCAGAGCAGA Direct Loss 0.952678043756163 0 NA NA prediction 0.905356087512326 Functional Loss - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26595017 chr1:26595017 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3037 0 0 1 0 1 CEP85 chr1:26594974 3'AG 26594974 Downstream 44bp 2975 chr2 96071345 96071345 1 + G T SARC 96071345 + 96071325 96071365 41 AGAAGGTTACTCACAGTTCTGCTGCAGGCTCAGAAGTGGCC AGAAGGTTACTCACAGTTCTTCTGCAGGCTCAGAAGTGGCC Direct Loss 0.952677007861234 0 NA NA prediction 0.905354015722467 Functional Loss - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96071345 chr2:96071345 synonymous SNV . 0 21 hm7G_associated_SNPs_3038 0 0 1 0 1 FAHD2A chr2:96071301 3'AG 96071301 Downstream 45bp 2976 chr22 24964111 24964111 1 + G T LUAD 24964111 + 24964091 24964131 41 AAAACCAAGGCTCAGGGGCTGGCCGAGGAAAAGCTGCTATT AAAACCAAGGCTCAGGGGCTTGCCGAGGAAAAGCTGCTATT Direct Loss 0.952654518421558 0 NA NA prediction 0.905309036843115 Functional Loss - SNRPD3 ENSG00000100028 CDS Human protein_coding chr22:24964111 chr22:24964111 nonsynonymous SNV 0.984 2 21 hm7G_associated_SNPs_3040 0 0 1 0 1 SNRPD3 chr22:24964144 5'GT 24964144 Upstream 34bp 2977 chr16 57486729 57486729 1 + G A COAD 57486729 + 57486709 57486749 41 TCAGGTATACAGACCAGGGCGGCGAGGAGGAGGAGGACTAT TCAGGTATACAGACCAGGGCAGCGAGGAGGAGGAGGACTAT Direct Loss 0.952650294691139 0 NA NA prediction 0.905300589382278 Functional Loss - COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486729 chr16:57486729 nonsynonymous SNV 0.012 3 21 hm7G_associated_SNPs_3041 0 0 1 0 1 COQ9 chr16:57486713 3'AG 57486713 Downstream 17bp 2978 chr12 6965536 6965536 1 + G A ESCA 6965536 + 6965516 6965556 41 CAAGCAGGAGGTGCAGGCATGGGATGGGGAAGTACGGCAGG CAAGCAGGAGGTGCAGGCATAGGATGGGGAAGTACGGCAGG Direct Loss 0.952639712878455 0 NA NA prediction 0.90527942575691 Functional Loss - USP5 ENSG00000111667 CDS Human protein_coding chr12:6965536 chr12:6965536 stopgain 0.995 1 21 hm7G_associated_SNPs_3042 0 0 1 0 2 USP5 chr12:6965469 3'AG 6965469 Downstream 68bp 2979 chr12 6965536 6965536 1 + G A ESCA 6965536 + 6965516 6965556 41 CAAGCAGGAGGTGCAGGCATGGGATGGGGAAGTACGGCAGG CAAGCAGGAGGTGCAGGCATAGGATGGGGAAGTACGGCAGG Direct Loss 0.952639712878455 0 NA NA prediction 0.90527942575691 Functional Loss - USP5 ENSG00000111667 CDS Human protein_coding chr12:6965536 chr12:6965536 stopgain 0.995 1 21 hm7G_associated_SNPs_3042 0 0 1 0 2 USP5 chr12:6965614 5'GT 6965614 Upstream 79bp 2980 chr2 135616917 135616917 1 + G A SKCM 135616917 + 135616897 135616937 41 GAAGTTCGTATTAGAGAAATGGACCAAAAAGGTACGATGAG GAAGTTCGTATTAGAGAAATAGACCAAAAAGGTACGATGAG Direct Loss 0.952635822917265 0 NA NA prediction 0.905271645834531 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135616917 chr2:135616917 stopgain 1.000 4 21 hm7G_associated_SNPs_3044 0 0 0 0 2 ACMSD chr2:135616831 3'AG 135616831 Downstream 87bp 2981 chr2 135616917 135616917 1 + G A SKCM 135616917 + 135616897 135616937 41 GAAGTTCGTATTAGAGAAATGGACCAAAAAGGTACGATGAG GAAGTTCGTATTAGAGAAATAGACCAAAAAGGTACGATGAG Direct Loss 0.952635822917265 0 NA NA prediction 0.905271645834531 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135616917 chr2:135616917 stopgain 1.000 4 21 hm7G_associated_SNPs_3044 0 0 0 0 2 ACMSD chr2:135616927 5'GT 135616927 Upstream 11bp 2982 chr17 34171540 34171540 1 + G A LUAD 34171540 + 34171520 34171560 41 GAGGTCGTGGGGGCAGAGGTGGAGACCGAGGCGGCTATGGT GAGGTCGTGGGGGCAGAGGTAGAGACCGAGGCGGCTATGGT Direct Loss 0.952633877057625 0 NA NA prediction 0.90526775411525 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34171540 chr17:34171540 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3045 0 0 1 0 1 TAF15 chr17:34171481 3'AG 34171481 Downstream 60bp 2983 chr4 110354973 110354973 1 - C A rs72896632 110354973 - 110354953 110354993 41 AGGGAGGTGGGCGGAGGGAAGGGAAGGCGGGGCCGGAGAGG AGGGAGGTGGGCGGAGGGAATGGAAGGCGGGGCCGGAGAGG Direct Loss 0.95262796129859 0 NA NA prediction 0.905255922597181 Functional Loss - SEC24B-AS1 ENSG00000247950 ncRNA_exonic Human antisense chr4:110354973 chr4:110354973 . . 0 21 hm7G_associated_SNPs_3046 0 0 0 0 1 SEC24B-AS1 chr4:110354890 5'GT 110354890 Upstream 84bp 2984 chr19 3589536 3589536 1 + G T LUAD 3589536 + 3589516 3589556 41 GGCTTCGTTCTGGGGGGGCTGCCACAGTGGAGGAAGCGGTG GGCTTCGTTCTGGGGGGGCTTCCACAGTGGAGGAAGCGGTG Direct Loss 0.952621621273456 0 NA NA prediction 0.905243242546912 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589536 chr19:3589536 nonsynonymous SNV 0.970 5 21 hm7G_associated_SNPs_3047 0 0 0 0 2 GIPC3 chr19:3589441 3'AG 3589441 Downstream 96bp 2985 chr19 3589536 3589536 1 + G T LUAD 3589536 + 3589516 3589556 41 GGCTTCGTTCTGGGGGGGCTGCCACAGTGGAGGAAGCGGTG GGCTTCGTTCTGGGGGGGCTTCCACAGTGGAGGAAGCGGTG Direct Loss 0.952621621273456 0 NA NA prediction 0.905243242546912 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589536 chr19:3589536 nonsynonymous SNV 0.970 5 21 hm7G_associated_SNPs_3047 0 0 0 0 2 GIPC3 chr19:3589553 5'GT 3589553 Upstream 18bp 2986 chr2 223791856 223791856 1 + G T LUSC 223791856 + 223791836 223791876 41 TCTGTTTCTGCTGTCCTGTTGGTCAGGGATACGGGCTCACT TCTGTTTCTGCTGTCCTGTTTGTCAGGGATACGGGCTCACT Direct Loss 0.952577062639368 0 NA NA prediction 0.905154125278737 Functional Loss - ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223791856 chr2:223791856 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3049 0 0 1 0 1 ACSL3 chr2:223791907 5'GT 223791907 Upstream 52bp 2987 chr11 62502931 62502931 1 + G C LUAD 62502931 + 62502911 62502951 41 AAGTCCTGGAACGACAGCCTGATAATGCCAAGGCCTTGTAT AAGTCCTGGAACGACAGCCTCATAATGCCAAGGCCTTGTAT Direct Loss 0.952575604092318 0 NA NA prediction 0.905151208184636 Functional Loss - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62502931 chr11:62502931 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_3050 0 0 1 0 1 TTC9C chr11:62502854 3'AG 62502854 Downstream 78bp 2988 chr2 101188229 101188229 1 + G A HNSC 101188229 + 101188209 101188249 41 GCTCAGTTTATTGGTCCTCTGGTGTTTGGCGGCATGAACCT GCTCAGTTTATTGGTCCTCTAGTGTTTGGCGGCATGAACCT Direct Loss 0.952568012834321 0 NA NA prediction 0.905136025668642 Functional Loss - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101188229 chr2:101188229 synonymous SNV . 0 21 hm7G_associated_SNPs_3052 0 0 1 0 1 PDCL3 chr2:101188260 5'GT 101188260 Upstream 32bp 2989 chr20 31825520 31825520 1 + G A UCEC 31825520 + 31825500 31825540 41 CAGATACTAAGAGCAAAGATGTTTCAAACTGGGGGCCTCAT CAGATACTAAGAGCAAAGATATTTCAAACTGGGGGCCTCAT Direct Loss 0.952566195472047 0 NA NA prediction 0.905132390944094 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825520 chr20:31825520 nonsynonymous SNV 0.387 2 21 hm7G_associated_SNPs_3053 0 0 0 0 1 BPIFA1 chr20:31825503 3'AG 31825503 Downstream 18bp 2990 chr11 65746121 65746121 1 + G T BRCA 65746121 + 65746101 65746141 41 GGCAAGGGCTCAGGCAAGATGAAGACAGAGCGGCGGATGAA GGCAAGGGCTCAGGCAAGATTAAGACAGAGCGGCGGATGAA Direct Loss 0.952561428109507 0 NA NA prediction 0.905122856219013 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65746121 chr11:65746121 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3054 0 0 1 0 2 SART1 chr11:65746071 3'AG 65746071 Downstream 51bp 2991 chr11 65746121 65746121 1 + G T BRCA 65746121 + 65746101 65746141 41 GGCAAGGGCTCAGGCAAGATGAAGACAGAGCGGCGGATGAA GGCAAGGGCTCAGGCAAGATTAAGACAGAGCGGCGGATGAA Direct Loss 0.952561428109507 0 NA NA prediction 0.905122856219013 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65746121 chr11:65746121 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3054 0 0 1 0 2 SART1 chr11:65746160 5'GT 65746160 Upstream 40bp 2992 chr20 18163771 18163771 1 + G A LUSC 18163771 + 18163751 18163791 41 TTCTGTGGTACCGGAGGCGTGATTATGAAACAAAGCCACCC TTCTGTGGTACCGGAGGCGTAATTATGAAACAAAGCCACCC Direct Loss 0.952549394702877 0 NA NA prediction 0.905098789405753 Functional Loss - KAT14 ENSG00000149474 CDS Human protein_coding chr20:18163771 chr20:18163771 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3058 0 0 1 0 1 KAT14 chr20:18163767 3'AG 18163767 Downstream 5bp 2993 chr11 64087239 64087239 1 + G A BRCA 64087239 + 64087219 64087259 41 TCCCAGCAGTGGAGGTGTTTGAAGGGGAGCCAGGGAACAAG TCCCAGCAGTGGAGGTGTTTAAAGGGGAGCCAGGGAACAAG Direct Loss 0.952547384937367 0 NA NA prediction 0.905094769874734 Functional Loss - PRDX5 ENSG00000126432 CDS Human protein_coding chr11:64087239 chr11:64087239 nonsynonymous SNV 0.990 4 21 hm7G_associated_SNPs_3059 0 0 1 1 1 PRDX5 chr11:64087206 3'AG 64087206 Downstream 34bp 2994 chr5 178996330 178996330 1 + G A BLCA 178996330 + 178996310 178996350 41 TATGAGCCTGAGGCTTTAATGATGGAGGAAGAAGGGATGGT TATGAGCCTGAGGCTTTAATAATGGAGGAAGAAGGGATGGT Direct Loss 0.952545176387452 0 NA NA prediction 0.905090352774904 Functional Loss - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178996330 chr5:178996330 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3060 0 0 1 0 2 RUFY1 chr5:178996303 3'AG 178996303 Downstream 28bp 2995 chr5 178996330 178996330 1 + G A BLCA 178996330 + 178996310 178996350 41 TATGAGCCTGAGGCTTTAATGATGGAGGAAGAAGGGATGGT TATGAGCCTGAGGCTTTAATAATGGAGGAAGAAGGGATGGT Direct Loss 0.952545176387452 0 NA NA prediction 0.905090352774904 Functional Loss - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178996330 chr5:178996330 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3060 0 0 1 0 2 RUFY1 chr5:178996426 5'GT 178996426 Upstream 97bp 2996 chr9 135413078 135413078 1 + G A SKCM 135413078 + 135413058 135413098 41 ACCCAGAAAGCCATCAAACTGGAGAAGAAGCAGAAGGTAAA ACCCAGAAAGCCATCAAACTAGAGAAGAAGCAGAAGGTAAA Direct Loss 0.952524127710522 0 NA NA prediction 0.905048255421044 Functional Loss - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135413078 chr9:135413078 synonymous SNV . 0 21 hm7G_associated_SNPs_3062 0 0 0 0 2 CFAP77 chr9:135412988 3'AG 135412988 Downstream 91bp 2997 chr9 135413078 135413078 1 + G A SKCM 135413078 + 135413058 135413098 41 ACCCAGAAAGCCATCAAACTGGAGAAGAAGCAGAAGGTAAA ACCCAGAAAGCCATCAAACTAGAGAAGAAGCAGAAGGTAAA Direct Loss 0.952524127710522 0 NA NA prediction 0.905048255421044 Functional Loss - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135413078 chr9:135413078 synonymous SNV . 0 21 hm7G_associated_SNPs_3062 0 0 0 0 2 CFAP77 chr9:135413093 5'GT 135413093 Upstream 16bp 2998 chr3 93813015 93813015 1 + G C CESC 93813015 + 93812995 93813035 41 TGTAATGAATATGATAGTCTGAGATTGAGGTGGCTAAGGCA TGTAATGAATATGATAGTCTCAGATTGAGGTGGCTAAGGCA Direct Loss 0.9525234658448 0 NA NA prediction 0.905046931689599 Functional Loss - NSUN3 ENSG00000178694 CDS Human protein_coding chr3:93813015 chr3:93813015 synonymous SNV . 0 21 hm7G_associated_SNPs_3063 0 0 1 0 1 NSUN3 chr3:93812984 3'AG 93812984 Downstream 32bp 2999 chr3 137748713 137748713 1 + G T OV 137748713 + 137748693 137748733 41 AATTGGGGGTGTGATGATGTGCATCGCCTGCCGGGGCCTGG AATTGGGGGTGTGATGATGTTCATCGCCTGCCGGGGCCTGG Direct Loss 0.95251833568111 0 NA NA prediction 0.90503667136222 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137748713 chr3:137748713 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3064 0 0 0 0 2 CLDN18 chr3:137748639 3'AG 137748639 Downstream 75bp 3000 chr3 137748713 137748713 1 + G T OV 137748713 + 137748693 137748733 41 AATTGGGGGTGTGATGATGTGCATCGCCTGCCGGGGCCTGG AATTGGGGGTGTGATGATGTTCATCGCCTGCCGGGGCCTGG Direct Loss 0.95251833568111 0 NA NA prediction 0.90503667136222 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137748713 chr3:137748713 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3064 0 0 0 0 2 CLDN18 chr3:137748749 5'GT 137748749 Upstream 37bp 3001 chr20 36561955 36561955 1 + G A rs147470276 36561955 + 36561935 36561975 41 CAACAGCTAAAAGCATCTCAGCAGGAAGACGCAGGGAAGGA CAACAGCTAAAAGCATCTCAACAGGAAGACGCAGGGAAGGA Direct Loss 0.952512862029249 0 NA NA prediction 0.905025724058497 Functional Loss - VSTM2L ENSG00000132821 CDS Human protein_coding chr20:36561955 chr20:36561955 synonymous SNV . 0 21 hm7G_associated_SNPs_3065 0 0 0 0 1 VSTM2L chr20:36561941 3'AG 36561941 Downstream 15bp 3002 chr12 69742245 69742245 1 + G T STAD 69742245 + 69742225 69742265 41 TCTGTTACGGTCCAGGGCAAGGTCTTTGAAAGGTGTGAGTT TCTGTTACGGTCCAGGGCAATGTCTTTGAAAGGTGTGAGTT Direct Loss 0.95248716168653 0 NA NA prediction 0.90497432337306 Functional Loss - LYZ ENSG00000090382 CDS Human protein_coding chr12:69742245 chr12:69742245 nonsynonymous SNV 0.345 5 21 hm7G_associated_SNPs_3067 0 0 1 0 1 LYZ chr12:69742324 5'GT 69742324 Upstream 80bp 3003 chr8 8875866 8875866 1 + G A BLCA 8875866 + 8875846 8875886 41 AAAAAAGTAATTGACTGGATGAAATTGAAGGAATTAGGAAC AAAAAAGTAATTGACTGGATAAAATTGAAGGAATTAGGAAC Direct Loss 0.952473446478885 0 NA NA prediction 0.90494689295777 Functional Loss - ERI1 ENSG00000104626 CDS Human protein_coding chr8:8875866 chr8:8875866 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3068 0 0 1 0 2 ERI1 chr8:8875807 3'AG 8875807 Downstream 60bp 3004 chr8 8875866 8875866 1 + G A BLCA 8875866 + 8875846 8875886 41 AAAAAAGTAATTGACTGGATGAAATTGAAGGAATTAGGAAC AAAAAAGTAATTGACTGGATAAAATTGAAGGAATTAGGAAC Direct Loss 0.952473446478885 0 NA NA prediction 0.90494689295777 Functional Loss - ERI1 ENSG00000104626 CDS Human protein_coding chr8:8875866 chr8:8875866 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3068 0 0 1 0 2 ERI1 chr8:8875916 5'GT 8875916 Upstream 51bp 3005 chr5 7897251 7897251 1 + G T LUSC 7897251 + 7897231 7897271 41 CCTTCTCAAGAGATGCTCCTGTTGGGGAGGAGGAAGCCCCA CCTTCTCAAGAGATGCTCCTTTTGGGGAGGAGGAAGCCCCA Direct Loss 0.952461554308353 0 NA NA prediction 0.904923108616706 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7897251 chr5:7897251 nonsynonymous SNV 0.001 1 21 hm7G_associated_SNPs_3069 0 0 1 0 1 MTRR chr5:7897178 3'AG 7897178 Downstream 74bp 3006 chr5 41934243 41934243 1 + G A HNSC 41934243 + 41934223 41934263 41 TTTTTTTTCTAGAAAGGAAAGAGATAGAGCAAGGGAAGAGC TTTTTTTTCTAGAAAGGAAAAAGATAGAGCAAGGGAAGAGC Direct Loss 0.952458408017114 0 NA NA prediction 0.904916816034228 Functional Loss - FBXO4 ENSG00000151876 CDS Human protein_coding chr5:41934243 chr5:41934243 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3071 0 0 0 0 1 FBXO4 chr5:41934235 3'AG 41934235 Downstream 9bp 3007 chr15 41762577 41762577 1 + G T HNSC 41762577 + 41762557 41762597 41 CATCACGAACATCATCGTCTGATGAAGAAGAGGAGTAAGCT CATCACGAACATCATCGTCTTATGAAGAAGAGGAGTAAGCT Direct Loss 0.952441114398053 0 NA NA prediction 0.904882228796106 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41762577 chr15:41762577 nonsynonymous SNV 0.963 4 21 hm7G_associated_SNPs_3072 0 0 1 0 1 RTF1 chr15:41762590 5'GT 41762590 Upstream 14bp 3008 chr7 54617605 54617605 1 + G C LUAD 54617605 + 54617585 54617625 41 AAAAGGATGAAGGCTTATATGAGTGCAGGGTGACTGATGCC AAAAGGATGAAGGCTTATATCAGTGCAGGGTGACTGATGCC Direct Loss 0.952435114115277 0 NA NA prediction 0.904870228230553 Functional Loss - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54617605 chr7:54617605 nonsynonymous SNV 0.975 4 21 hm7G_associated_SNPs_3074 0 0 0 0 1 VSTM2A chr7:54617527 3'AG 54617527 Downstream 79bp 3009 chr18 3255818 3255818 1 + G A BLCA 3255818 + 3255798 3255838 41 TTACAGATGAGGAAGTGGATGAGCTGTACAGAGAAGCACCT TTACAGATGAGGAAGTGGATAAGCTGTACAGAGAAGCACCT Direct Loss 0.952425106893598 0 NA NA prediction 0.904850213787196 Functional Loss - MYL12A ENSG00000101608 CDS Human protein_coding chr18:3255818 chr18:3255818 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_3075 0 0 1 0 1 MYL12A chr18:3255744 3'AG 3255744 Downstream 75bp 3010 chr14 39602874 39602874 1 + G A rs530274234 39602874 + 39602854 39602894 41 TTTTTTTTTAGGATAGCAAAGATGATGAGAGGGTTCCTGCT TTTTTTTTTAGGATAGCAAAAATGATGAGAGGGTTCCTGCT Direct Loss 0.95241363185488 0 NA NA prediction 0.90482726370976 Functional Loss - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39602874 chr14:39602874 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3076 0 0 0 1 2 GEMIN2 chr14:39602865 3'AG 39602865 Downstream 10bp 3011 chr14 39602874 39602874 1 + G A rs530274234 39602874 + 39602854 39602894 41 TTTTTTTTTAGGATAGCAAAGATGATGAGAGGGTTCCTGCT TTTTTTTTTAGGATAGCAAAAATGATGAGAGGGTTCCTGCT Direct Loss 0.95241363185488 0 NA NA prediction 0.90482726370976 Functional Loss - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39602874 chr14:39602874 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3076 0 0 0 1 2 GEMIN2 chr14:39602923 5'GT 39602923 Upstream 50bp 3012 chr7 139094363 139094363 1 + G T COAD 139094363 + 139094343 139094383 41 AGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGAGAAGAA AGGAACGGCTGAAACGAAGATAAGAGAGAGAGAGAGAAGAA Direct Loss 0.95239991035062 0 NA NA prediction 0.904799820701241 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094363 chr7:139094363 stopgain 1.000 1 21 hm7G_associated_SNPs_3078 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 55bp 3013 chr7 139094363 139094363 1 + G T COAD 139094363 + 139094343 139094383 41 AGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGAGAAGAA AGGAACGGCTGAAACGAAGATAAGAGAGAGAGAGAGAAGAA Direct Loss 0.95239991035062 0 NA NA prediction 0.904799820701241 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094363 chr7:139094363 stopgain 1.000 1 21 hm7G_associated_SNPs_3078 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 38bp 3014 chr7 121944099 121944099 1 - C G HNSC 121944099 - 121944079 121944119 41 CTGAGTCTCAAGGGCGACCTGGCCCGCGACGCGCTGCCGCT CTGAGTCTCAAGGGCGACCTCGCCCGCGACGCGCTGCCGCT Direct Loss 0.952390478515496 0 NA NA prediction 0.904780957030991 Functional Loss - FEZF1 ENSG00000128610 CDS Human protein_coding chr7:121944099 chr7:121944099 synonymous SNV . 0 21 hm7G_associated_SNPs_3079 0 0 0 0 1 FEZF1 chr7:121944063 5'GT 121944063 Upstream 37bp 3015 chr12 110352427 110352427 1 + G A LUSC 110352427 + 110352407 110352447 41 CCAGGAAGCAGGAGCTGGAAGCCCAGGTAGGGCTGAGCCCA CCAGGAAGCAGGAGCTGGAAACCCAGGTAGGGCTGAGCCCA Direct Loss 0.952386042113761 0 NA NA prediction 0.904772084227521 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110352427 chr12:110352427 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_3080 0 0 1 0 1 TCHP chr12:110352432 5'GT 110352432 Upstream 6bp 3016 chr10 1063062 1063062 1 + G T READ 1063062 + 1063042 1063082 41 AAGAATGCTCAGAAGAAGATGAATCGGTTGGGGAAGAAAGG AAGAATGCTCAGAAGAAGATTAATCGGTTGGGGAAGAAAGG Direct Loss 0.952373906230176 0 NA NA prediction 0.904747812460351 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1063062 chr10:1063062 nonsynonymous SNV 0.971 1 21 hm7G_associated_SNPs_3082 0 0 1 0 1 GTPBP4 chr10:1063015 3'AG 1063015 Downstream 48bp 3017 chr11 314932 314932 1 + G A STAD 314932 + 314912 314952 41 TCTCCCCCAGTCTAGGGACAGGAAGATGGTTGGCGACGTGA TCTCCCCCAGTCTAGGGACAAGAAGATGGTTGGCGACGTGA Direct Loss 0.952349391231844 0 NA NA prediction 0.904698782463689 Functional Loss - IFITM1 ENSG00000185201;ENSG00000185885 CDS Human other chr11:314932 chr11:314932 nonsynonymous SNV 0.934 2 21 hm7G_associated_SNPs_3083 0 0 0 0 1 IFITM1 chr11:314922 3'AG 314922 Downstream 11bp 3018 chrX 153496064 153496064 1 + G A BLCA 153496064 + 153496044 153496084 41 TCCACCCAGAAGGCAGAGAAGGAAGTGACGCGCATGGTGGT TCCACCCAGAAGGCAGAGAAAGAAGTGACGCGCATGGTGGT Direct Loss 0.952339808173245 0 NA NA prediction 0.904679616346489 Functional Loss - OPN1MW;OPN1MW2;OPN1MW3 ENSG00000166160 CDS Human protein_coding chrX:153496064 chrX:153496064 synonymous SNV . 0 21 hm7G_associated_SNPs_3084 0 0 0 0 1 OPN1MW;OPN1MW2;OPN1MW3 chrX:153496017 3'AG 153496017 Downstream 48bp 3019 chr10 82122230 82122230 1 + G T LUAD 82122230 + 82122210 82122250 41 ACTACCTGAAGAGGTGCTTTGGAAATTGCCTGGCCCAGGCA ACTACCTGAAGAGGTGCTTTTGAAATTGCCTGGCCCAGGCA Direct Loss 0.952333074958625 0 NA NA prediction 0.904666149917251 Functional Loss - DYDC2 ENSG00000133665 CDS Human protein_coding chr10:82122230 chr10:82122230 stopgain 0.991 1 21 hm7G_associated_SNPs_3085 0 0 0 0 1 DYDC2 chr10:82122191 3'AG 82122191 Downstream 40bp 3020 chr11 70281216 70281216 1 + G C HNSC 70281216 + 70281196 70281236 41 CGGCTGGTGGCGCGGGGTGTGCAAGGGCCGGTACGGGCTCT CGGCTGGTGGCGCGGGGTGTCCAAGGGCCGGTACGGGCTCT Direct Loss 0.95232428231088 0 NA NA prediction 0.904648564621759 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281216 chr11:70281216 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3087 0 0 1 0 2 CTTN chr11:70281132 3'AG 70281132 Downstream 85bp 3021 chr11 70281216 70281216 1 + G C HNSC 70281216 + 70281196 70281236 41 CGGCTGGTGGCGCGGGGTGTGCAAGGGCCGGTACGGGCTCT CGGCTGGTGGCGCGGGGTGTCCAAGGGCCGGTACGGGCTCT Direct Loss 0.95232428231088 0 NA NA prediction 0.904648564621759 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70281216 chr11:70281216 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3087 0 0 1 0 2 CTTN chr11:70281225 5'GT 70281225 Upstream 10bp 3022 chr12 49373305 49373305 1 + G A rs181106181 49373305 + 49373285 49373325 41 CTTACAGACTCCAAGAGTCTGCAACTGGTACTCGAGCCCAG CTTACAGACTCCAAGAGTCTACAACTGGTACTCGAGCCCAG Direct Loss 0.952322427607523 0 NA NA prediction 0.904644855215045 Functional Loss - WNT1 ENSG00000125084 CDS Human protein_coding chr12:49373305 chr12:49373305 synonymous SNV . 0 21 hm7G_associated_SNPs_3088 0 0 0 0 1 WNT1 chr12:49373251 3'AG 49373251 Downstream 55bp 3023 chr17 18682425 18682425 1 + G C BLCA 18682425 + 18682405 18682445 41 TTCGTGCTGTTGACCGTGAAGGAGGAGAAGGAGCACCAGGA TTCGTGCTGTTGACCGTGAACGAGGAGAAGGAGCACCAGGA Direct Loss 0.952317694377705 0 NA NA prediction 0.90463538875541 Functional Loss - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18682425 chr17:18682425 nonsynonymous SNV 0.679 3 21 hm7G_associated_SNPs_3089 0 0 0 0 1 FBXW10 chr17:18682392 3'AG 18682392 Downstream 34bp 3024 chr20 47855574 47855574 1 + G A UCEC 47855574 + 47855554 47855594 41 GAGGCGGAGGAAAAAGAGATGCAGCAGTCAGAAGCCCAGGT GAGGCGGAGGAAAAAGAGATACAGCAGTCAGAAGCCCAGGT Direct Loss 0.952307883216535 0 NA NA prediction 0.904615766433069 Functional Loss - DDX27 ENSG00000124201;ENSG00000124228 CDS Human other chr20:47855574 chr20:47855574 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3090 0 0 1 0 2 DDX27 chr20:47855486 3'AG 47855486 Downstream 89bp 3025 chr20 47855574 47855574 1 + G A UCEC 47855574 + 47855554 47855594 41 GAGGCGGAGGAAAAAGAGATGCAGCAGTCAGAAGCCCAGGT GAGGCGGAGGAAAAAGAGATACAGCAGTCAGAAGCCCAGGT Direct Loss 0.952307883216535 0 NA NA prediction 0.904615766433069 Functional Loss - DDX27 ENSG00000124201;ENSG00000124228 CDS Human other chr20:47855574 chr20:47855574 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3090 0 0 1 0 2 DDX27 chr20:47855592 5'GT 47855592 Upstream 19bp 3026 chr18 61620716 61620716 1 + G T LUAD 61620716 + 61620696 61620736 41 ATATCATCAGCCTTGGCCATGGTTTTCATGGGGGCAAAGGG ATATCATCAGCCTTGGCCATTGTTTTCATGGGGGCAAAGGG Direct Loss 0.952279688528673 0 NA NA prediction 0.904559377057346 Functional Loss - HMSD ENSG00000221887 CDS Human protein_coding chr18:61620716 chr18:61620716 nonsynonymous SNV 0.125 4 21 hm7G_associated_SNPs_3091 0 0 0 0 1 HMSD chr18:61620761 5'GT 61620761 Upstream 46bp 3027 chr3 151542539 151542539 1 + G A LAML 151542539 + 151542519 151542559 41 TCTTACGTAAAAAAGTTCTTGCAAAATATGGTGTGAACCCT TCTTACGTAAAAAAGTTCTTACAAAATATGGTGTGAACCCT Direct Loss 0.952271377425813 0 NA NA prediction 0.904542754851625 Functional Loss - AADAC ENSG00000114771 CDS Human protein_coding chr3:151542539 chr3:151542539 nonsynonymous SNV 0.047 0 21 hm7G_associated_SNPs_3093 0 0 0 0 2 AADAC chr3:151542451 3'AG 151542451 Downstream 89bp 3028 chr3 151542539 151542539 1 + G A LAML 151542539 + 151542519 151542559 41 TCTTACGTAAAAAAGTTCTTGCAAAATATGGTGTGAACCCT TCTTACGTAAAAAAGTTCTTACAAAATATGGTGTGAACCCT Direct Loss 0.952271377425813 0 NA NA prediction 0.904542754851625 Functional Loss - AADAC ENSG00000114771 CDS Human protein_coding chr3:151542539 chr3:151542539 nonsynonymous SNV 0.047 0 21 hm7G_associated_SNPs_3093 0 0 0 0 2 AADAC chr3:151542622 5'GT 151542622 Upstream 84bp 3029 chr22 35812706 35812706 1 + G C LIHC 35812706 + 35812686 35812726 41 CAGTGTTCGGCCGCTGGGATGAGACGAAGGGGGAGGACAAC CAGTGTTCGGCCGCTGGGATCAGACGAAGGGGGAGGACAAC Direct Loss 0.952261031239277 0 NA NA prediction 0.904522062478553 Functional Loss - MCM5 ENSG00000100297 CDS Human protein_coding chr22:35812706 chr22:35812706 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3094 0 0 1 0 1 MCM5 chr22:35812631 3'AG 35812631 Downstream 76bp 3030 chr12 49308208 49308208 1 + G A SKCM 49308208 + 49308188 49308228 41 CTTTAGCTAAAGACCTGTCCGAAGCCGAGGAGCAGTACGCC CTTTAGCTAAAGACCTGTCCAAAGCCGAGGAGCAGTACGCC Direct Loss 0.952252921461117 0 NA NA prediction 0.904505842922234 Functional Loss - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49308208 chr12:49308208 nonsynonymous SNV 0.853 3 21 hm7G_associated_SNPs_3096 0 0 0 0 1 CCDC65 chr12:49308187 3'AG 49308187 Downstream 22bp 3031 chr17 29261276 29261276 1 + G A LGG 29261276 + 29261256 29261296 41 AGAAGGAAGTTTGTACTTCTGGCAAGAGAAGGCCTCCTGAA AGAAGGAAGTTTGTACTTCTAGCAAGAGAAGGCCTCCTGAA Direct Loss 0.952249517191216 0 NA NA prediction 0.904499034382431 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29261276 chr17:29261276 synonymous SNV . 0 21 hm7G_associated_SNPs_3098 0 0 0 0 2 ADAP2 chr17:29261203 3'AG 29261203 Downstream 74bp 3032 chr17 29261276 29261276 1 + G A LGG 29261276 + 29261256 29261296 41 AGAAGGAAGTTTGTACTTCTGGCAAGAGAAGGCCTCCTGAA AGAAGGAAGTTTGTACTTCTAGCAAGAGAAGGCCTCCTGAA Direct Loss 0.952249517191216 0 NA NA prediction 0.904499034382431 Functional Loss - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29261276 chr17:29261276 synonymous SNV . 0 21 hm7G_associated_SNPs_3098 0 0 0 0 2 ADAP2 chr17:29261315 5'GT 29261315 Upstream 40bp 3033 chr9 88590033 88590033 1 + G A LGG 88590033 + 88590013 88590053 41 TTGTTTCTTTTTCTAGGCATGCTAAAAGATGTGGAGGATGA TTGTTTCTTTTTCTAGGCATACTAAAAGATGTGGAGGATGA Direct Loss 0.952246907809498 0 NA NA prediction 0.904493815618996 Functional Loss - NAA35 ENSG00000135040 CDS Human protein_coding chr9:88590033 chr9:88590033 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3099 0 0 1 0 2 NAA35 chr9:88590029 3'AG 88590029 Downstream 5bp 3034 chr9 88590033 88590033 1 + G A LGG 88590033 + 88590013 88590053 41 TTGTTTCTTTTTCTAGGCATGCTAAAAGATGTGGAGGATGA TTGTTTCTTTTTCTAGGCATACTAAAAGATGTGGAGGATGA Direct Loss 0.952246907809498 0 NA NA prediction 0.904493815618996 Functional Loss - NAA35 ENSG00000135040 CDS Human protein_coding chr9:88590033 chr9:88590033 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3099 0 0 1 0 2 NAA35 chr9:88590072 5'GT 88590072 Upstream 40bp 3035 chr16 56686510 56686510 1 + G C rs61744104 56686510 + 56686490 56686530 41 CTGTGCCTGCGCCGGCTCCTGCAAGTGCAAAGAGTGCAAAT CTGTGCCTGCGCCGGCTCCTCCAAGTGCAAAGAGTGCAAAT Direct Loss 0.952237571544864 0 NA NA prediction 0.904475143089728 Functional Loss - MT1B ENSG00000169688 CDS Human protein_coding chr16:56686510 chr16:56686510 nonsynonymous SNV 0.157 3 21 hm7G_associated_SNPs_3102 0 0 0 0 1 MT1B chr16:56686483 3'AG 56686483 Downstream 28bp 3036 chr1 36558026 36558026 1 + G T LUSC 36558026 + 36558006 36558046 41 TCTCCCCTAAACCACAGGTTGGGCATGGAGGAGCGTCCATA TCTCCCCTAAACCACAGGTTTGGCATGGAGGAGCGTCCATA Direct Loss 0.952215672001261 0 NA NA prediction 0.904431344002521 Functional Loss - ADPRHL2 ENSG00000116863 CDS Human protein_coding chr1:36558026 chr1:36558026 nonsynonymous SNV 0.917 1 21 hm7G_associated_SNPs_3103 0 0 1 0 2 ADPRHL2 chr1:36558023 3'AG 36558023 Downstream 4bp 3037 chr1 36558026 36558026 1 + G T LUSC 36558026 + 36558006 36558046 41 TCTCCCCTAAACCACAGGTTGGGCATGGAGGAGCGTCCATA TCTCCCCTAAACCACAGGTTTGGCATGGAGGAGCGTCCATA Direct Loss 0.952215672001261 0 NA NA prediction 0.904431344002521 Functional Loss - ADPRHL2 ENSG00000116863 CDS Human protein_coding chr1:36558026 chr1:36558026 nonsynonymous SNV 0.917 1 21 hm7G_associated_SNPs_3103 0 0 1 0 2 ADPRHL2 chr1:36558123 5'GT 36558123 Upstream 98bp 3038 chr1 162737140 162737140 1 + G A LIHC 162737140 + 162737120 162737160 41 AGGCAGTTCTGGCAGAAAATGCTGGAGAAGGTGAGGAGGTG AGGCAGTTCTGGCAGAAAATACTGGAGAAGGTGAGGAGGTG Direct Loss 0.952210329116877 0 NA NA prediction 0.904420658233755 Functional Loss - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162737140 chr1:162737140 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3104 0 0 0 0 1 DDR2 chr1:162737149 5'GT 162737149 Upstream 10bp 3039 chr22 21327621 21327621 1 + G A COAD 21327621 + 21327601 21327641 41 CTCAAGATCGAGGTGGTGCTGCCTGAGAAGGAGCGAGGCAA CTCAAGATCGAGGTGGTGCTACCTGAGAAGGAGCGAGGCAA Direct Loss 0.952203087618989 0 NA NA prediction 0.904406175237978 Functional Loss - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21327621 chr22:21327621 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_3106 0 0 1 0 2 AIFM3 chr22:21327578 3'AG 21327578 Downstream 44bp 3040 chr22 21327621 21327621 1 + G A COAD 21327621 + 21327601 21327641 41 CTCAAGATCGAGGTGGTGCTGCCTGAGAAGGAGCGAGGCAA CTCAAGATCGAGGTGGTGCTACCTGAGAAGGAGCGAGGCAA Direct Loss 0.952203087618989 0 NA NA prediction 0.904406175237978 Functional Loss - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21327621 chr22:21327621 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_3106 0 0 1 0 2 AIFM3 chr22:21327596 3'AG 21327596 Downstream 26bp 3041 chr1 44137241 44137241 1 + G A UCEC 44137241 + 44137221 44137261 41 TCAAACTAGAAGAGGAGGATGAGGAGGAAGAACAAGCAGCA TCAAACTAGAAGAGGAGGATAAGGAGGAAGAACAAGCAGCA Direct Loss 0.952155747014837 0 NA NA prediction 0.904311494029673 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44137241 chr1:44137241 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_3111 0 0 1 0 1 KDM4A chr1:44137176 3'AG 44137176 Downstream 66bp 3042 chr8 48874738 48874738 1 + G T rs569961103 48874738 + 48874718 48874758 41 AGAGGCCTGACCTGGGCTCTGCACAGAAGGGCCTGCAAGTG AGAGGCCTGACCTGGGCTCTTCACAGAAGGGCCTGCAAGTG Direct Loss 0.952142742433425 0 NA NA prediction 0.90428548486685 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874738 chr8:48874738 nonsynonymous SNV 0.772 1 21 hm7G_associated_SNPs_3112 0 0 1 0 3 MCM4 chr8:48874676 3'AG 48874676 Downstream 63bp 3043 chr8 48874738 48874738 1 + G T rs569961103 48874738 + 48874718 48874758 41 AGAGGCCTGACCTGGGCTCTGCACAGAAGGGCCTGCAAGTG AGAGGCCTGACCTGGGCTCTTCACAGAAGGGCCTGCAAGTG Direct Loss 0.952142742433425 0 NA NA prediction 0.90428548486685 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874738 chr8:48874738 nonsynonymous SNV 0.772 1 21 hm7G_associated_SNPs_3112 0 0 1 0 3 MCM4 chr8:48874722 3'AG 48874722 Downstream 17bp 3044 chr8 48874738 48874738 1 + G T rs569961103 48874738 + 48874718 48874758 41 AGAGGCCTGACCTGGGCTCTGCACAGAAGGGCCTGCAAGTG AGAGGCCTGACCTGGGCTCTTCACAGAAGGGCCTGCAAGTG Direct Loss 0.952142742433425 0 NA NA prediction 0.90428548486685 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48874738 chr8:48874738 nonsynonymous SNV 0.772 1 21 hm7G_associated_SNPs_3112 0 0 1 0 3 MCM4 chr8:48874776 5'GT 48874776 Upstream 39bp 3045 chr1 43618567 43618567 1 + G A OV 43618567 + 43618547 43618587 41 AGTACCCAGAGACACAGACTGAAAACCAGGAAGTTGGATGG AGTACCCAGAGACACAGACTAAAAACCAGGAAGTTGGATGG Direct Loss 0.952108708808715 0 NA NA prediction 0.904217417617431 Functional Loss - FAM183A ENSG00000186973 CDS Human protein_coding chr1:43618567 chr1:43618567 nonsynonymous SNV 0.011 4 21 hm7G_associated_SNPs_3116 0 0 0 0 2 FAM183A chr1:43618499 3'AG 43618499 Downstream 69bp 3046 chr1 43618567 43618567 1 + G A OV 43618567 + 43618547 43618587 41 AGTACCCAGAGACACAGACTGAAAACCAGGAAGTTGGATGG AGTACCCAGAGACACAGACTAAAAACCAGGAAGTTGGATGG Direct Loss 0.952108708808715 0 NA NA prediction 0.904217417617431 Functional Loss - FAM183A ENSG00000186973 CDS Human protein_coding chr1:43618567 chr1:43618567 nonsynonymous SNV 0.011 4 21 hm7G_associated_SNPs_3116 0 0 0 0 2 FAM183A chr1:43618602 5'GT 43618602 Upstream 36bp 3047 chr2 27907958 27907958 1 + G A HNSC 27907958 + 27907938 27907978 41 CTCTAATGAGAATGAAAGATGAGCCTGAAGTAGAAGAGGAG CTCTAATGAGAATGAAAGATAAGCCTGAAGTAGAAGAGGAG Direct Loss 0.952108096524755 0 NA NA prediction 0.90421619304951 Functional Loss - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27907958 chr2:27907958 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3117 0 0 0 0 1 SLC4A1AP chr2:27907904 3'AG 27907904 Downstream 55bp 3048 chr17 15604510 15604510 1 + G A COAD 15604510 + 15604490 15604530 41 ATTTCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCT ATTTCCAAGAGAAGAGCACAAAAGAGGGAGAAGTGGCTGCT Direct Loss 0.952102109899542 0 NA NA prediction 0.904204219799084 Functional Loss - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15604510 chr17:15604510 nonsynonymous SNV 0.962 0 21 hm7G_associated_SNPs_3119 0 0 1 0 2 ZNF286A chr17:15604466 3'AG 15604466 Downstream 45bp 3049 chr17 15604510 15604510 1 + G A COAD 15604510 + 15604490 15604530 41 ATTTCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTGCT ATTTCCAAGAGAAGAGCACAAAAGAGGGAGAAGTGGCTGCT Direct Loss 0.952102109899542 0 NA NA prediction 0.904204219799084 Functional Loss - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15604510 chr17:15604510 nonsynonymous SNV 0.962 0 21 hm7G_associated_SNPs_3119 0 0 1 0 2 ZNF286A chr17:15604554 5'GT 15604554 Upstream 45bp 3050 chr12 75763878 75763878 1 + G T LIHC 75763878 + 75763858 75763898 41 TTGACAGAAAATCCATTTCTGAAGCCAACGGGGAGAGCACC TTGACAGAAAATCCATTTCTTAAGCCAACGGGGAGAGCACC Direct Loss 0.952093214789632 0 NA NA prediction 0.904186429579263 Functional Loss - GLIPR1L1 ENSG00000173401 CDS Human protein_coding chr12:75763878 chr12:75763878 synonymous SNV 0.007 0 21 hm7G_associated_SNPs_3120 0 0 0 0 1 GLIPR1L1 chr12:75763865 3'AG 75763865 Downstream 14bp 3051 chr5 132087756 132087756 1 + G A UCEC 132087756 + 132087736 132087776 41 TCCCTGACCAGGCAGCTGCAGCACTGTATGGCGGGCCACCA TCCCTGACCAGGCAGCTGCAACACTGTATGGCGGGCCACCA Direct Loss 0.952090395138368 0 NA NA prediction 0.904180790276736 Functional Loss - CCNI2;SEPT8 ENSG00000164402;ENSG00000205089 CDS Human protein_coding chr5:132087756 chr5:132087756 synonymous SNV . 0 21 hm7G_associated_SNPs_3121 0 0 0 0 1 CCNI2 chr5:132087658 3'AG 132087658 Downstream 99bp 3052 chr3 126382316 126382316 1 + G A SKCM 126382316 + 126382296 126382336 41 TCTGGGCTTGTGCAGGTGGTGGATGCAGAGACTGGCAAGGT TCTGGGCTTGTGCAGGTGGTAGATGCAGAGACTGGCAAGGT Direct Loss 0.95208324916327 0 NA NA prediction 0.904166498326539 Functional Loss - NUP210P1 ENSG00000198284 ncRNA_exonic Human transcribed_processed_pseudogene chr3:126382316 chr3:126382316 . . 0 21 hm7G_associated_SNPs_3122 0 0 0 0 1 NUP210P1 chr3:126382352 5'GT 126382352 Upstream 37bp 3053 chr1 158325717 158325717 1 + G A LUAD 158325717 + 158325697 158325737 41 TACCCAAAGCCCGTGTGGGTGATGTGGATGCGGGGTGAGCA TACCCAAAGCCCGTGTGGGTAATGTGGATGCGGGGTGAGCA Direct Loss 0.952063752941093 0 NA NA prediction 0.904127505882185 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325717 chr1:158325717 synonymous SNV . 0 21 hm7G_associated_SNPs_3123 0 0 0 0 2 CD1E chr1:158325730 5'GT 158325730 Upstream 14bp 3054 chr1 158325717 158325717 1 + G A LUAD 158325717 + 158325697 158325737 41 TACCCAAAGCCCGTGTGGGTGATGTGGATGCGGGGTGAGCA TACCCAAAGCCCGTGTGGGTAATGTGGATGCGGGGTGAGCA Direct Loss 0.952063752941093 0 NA NA prediction 0.904127505882185 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325717 chr1:158325717 synonymous SNV . 0 21 hm7G_associated_SNPs_3123 0 0 0 0 2 CD1E chr1:158325791 5'GT 158325791 Upstream 75bp 3055 chrX 129055245 129055245 1 + G T UCEC 129055245 + 129055225 129055265 41 TCCAGGTAGCCTCTGAGAGTGAGGAAGAGGAGGGAGGCACA TCCAGGTAGCCTCTGAGAGTTAGGAAGAGGAGGGAGGCACA Direct Loss 0.952056820069432 0 NA NA prediction 0.904113640138864 Functional Loss - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129055245 chrX:129055245 stopgain 0.797 1 21 hm7G_associated_SNPs_3124 0 0 1 0 1 UTP14A chrX:129055170 3'AG 129055170 Downstream 76bp 3056 chr2 27522155 27522155 1 + G C rs144534850 27522155 + 27522135 27522175 41 CAGCACCTCATGTGCGAGGAGCATGAAGAAGAGAAGATCAA CAGCACCTCATGTGCGAGGACCATGAAGAAGAGAAGATCAA Direct Loss 0.952054302629208 0 NA NA prediction 0.904108605258416 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27522155 chr2:27522155 nonsynonymous SNV 0.890 1 21 hm7G_associated_SNPs_3125 0 0 0 0 1 TRIM54 chr2:27522113 3'AG 27522113 Downstream 43bp 3057 chr22 40415270 40415270 1 + G A SKCM 40415270 + 40415250 40415290 41 GTCCCAGTGTACATCATCCTGGACGAGGCAGGAGTGAAGTA GTCCCAGTGTACATCATCCTAGACGAGGCAGGAGTGAAGTA Direct Loss 0.952040610048883 0 NA NA prediction 0.904081220097766 Functional Loss - FAM83F ENSG00000133477 CDS Human protein_coding chr22:40415270 chr22:40415270 synonymous SNV . 0 21 hm7G_associated_SNPs_3128 0 0 0 0 2 FAM83F chr22:40415172 3'AG 40415172 Downstream 99bp 3058 chr22 40415270 40415270 1 + G A SKCM 40415270 + 40415250 40415290 41 GTCCCAGTGTACATCATCCTGGACGAGGCAGGAGTGAAGTA GTCCCAGTGTACATCATCCTAGACGAGGCAGGAGTGAAGTA Direct Loss 0.952040610048883 0 NA NA prediction 0.904081220097766 Functional Loss - FAM83F ENSG00000133477 CDS Human protein_coding chr22:40415270 chr22:40415270 synonymous SNV . 0 21 hm7G_associated_SNPs_3128 0 0 0 0 2 FAM83F chr22:40415339 5'GT 40415339 Upstream 70bp 3059 chr19 4430573 4430573 1 + G A CESC 4430573 + 4430553 4430593 41 ATGACGACATGGGAGAGGATGAAGATGAGGACGATGGTTTC ATGACGACATGGGAGAGGATAAAGATGAGGACGATGGTTTC Direct Loss 0.952040144183681 0 NA NA prediction 0.904080288367362 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4430573 chr19:4430573 nonsynonymous SNV 0.740 2 21 hm7G_associated_SNPs_3129 0 0 1 0 2 CHAF1A chr19:4430546 3'AG 4430546 Downstream 28bp 3060 chr19 4430573 4430573 1 + G A CESC 4430573 + 4430553 4430593 41 ATGACGACATGGGAGAGGATGAAGATGAGGACGATGGTTTC ATGACGACATGGGAGAGGATAAAGATGAGGACGATGGTTTC Direct Loss 0.952040144183681 0 NA NA prediction 0.904080288367362 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4430573 chr19:4430573 nonsynonymous SNV 0.740 2 21 hm7G_associated_SNPs_3129 0 0 1 0 2 CHAF1A chr19:4430638 5'GT 4430638 Upstream 66bp 3061 chr3 52836721 52836721 1 + G A UCEC 52836721 + 52836701 52836741 41 TTCACAGAGGAGGTGGACATGAAGGAGATGGAGAAGGCCCT TTCACAGAGGAGGTGGACATAAAGGAGATGGAGAAGGCCCT Direct Loss 0.95203089123615 0 NA NA prediction 0.9040617824723 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836721 chr3:52836721 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3132 0 0 1 0 1 ITIH3 chr3:52836683 3'AG 52836683 Downstream 39bp 3062 chr4 40337870 40337870 1 + G A UCEC 40337870 + 40337850 40337890 41 AGACGGCAGATGGAAAATATGCTCAGAAGTTGTTTAATGAC AGACGGCAGATGGAAAATATACTCAGAAGTTGTTTAATGAC Direct Loss 0.952021642970134 0 NA NA prediction 0.904043285940268 Functional Loss - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40337870 chr4:40337870 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3133 0 0 0 0 1 CHRNA9 chr4:40337844 3'AG 40337844 Downstream 27bp 3063 chr11 60615459 60615459 1 + G A UCEC 60615459 + 60615439 60615479 41 GCAGCGGAAGATGAAGGAACGACAGGAGAGGAAGCTGGCCA GCAGCGGAAGATGAAGGAACAACAGGAGAGGAAGCTGGCCA Direct Loss 0.952007185476674 0 NA NA prediction 0.904014370953348 Functional Loss - CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60615459 chr11:60615459 nonsynonymous SNV 0.978 4 21 hm7G_associated_SNPs_3135 0 0 1 0 2 CCDC86 chr11:60615397 3'AG 60615397 Downstream 63bp 3064 chr11 60615459 60615459 1 + G A UCEC 60615459 + 60615439 60615479 41 GCAGCGGAAGATGAAGGAACGACAGGAGAGGAAGCTGGCCA GCAGCGGAAGATGAAGGAACAACAGGAGAGGAAGCTGGCCA Direct Loss 0.952007185476674 0 NA NA prediction 0.904014370953348 Functional Loss - CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60615459 chr11:60615459 nonsynonymous SNV 0.978 4 21 hm7G_associated_SNPs_3135 0 0 1 0 2 CCDC86 chr11:60615526 5'GT 60615526 Upstream 68bp 3065 chr8 136657330 136657330 1 + G C GBM 136657330 + 136657310 136657350 41 ATTACTATGATTACGGACATGGACTCAGTGAGGAGACTTAT ATTACTATGATTACGGACATCGACTCAGTGAGGAGACTTAT Direct Loss 0.95200417627533 0 NA NA prediction 0.904008352550659 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136657330 chr8:136657330 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3136 0 0 1 0 2 KHDRBS3 chr8:136657302 3'AG 136657302 Downstream 29bp 3066 chr8 136657330 136657330 1 + G C GBM 136657330 + 136657310 136657350 41 ATTACTATGATTACGGACATGGACTCAGTGAGGAGACTTAT ATTACTATGATTACGGACATCGACTCAGTGAGGAGACTTAT Direct Loss 0.95200417627533 0 NA NA prediction 0.904008352550659 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136657330 chr8:136657330 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3136 0 0 1 0 2 KHDRBS3 chr8:136657360 5'GT 136657360 Upstream 31bp 3067 chr1 153603081 153603081 1 + G T UCEC 153603081 + 153603061 153603101 41 AAAGAGGGGGACAAGTACAAGCTGAGCAAGAAGGAGCTGAA AAAGAGGGGGACAAGTACAATCTGAGCAAGAAGGAGCTGAA Direct Loss 0.952000597269544 0 NA NA prediction 0.904001194539088 Functional Loss - S100A1 ENSG00000160678 CDS Human protein_coding chr1:153603081 chr1:153603081 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3137 0 0 1 0 2 S100A1 chr1:153602985 3'AG 153602985 Downstream 97bp 3068 chr1 153603081 153603081 1 + G T UCEC 153603081 + 153603061 153603101 41 AAAGAGGGGGACAAGTACAAGCTGAGCAAGAAGGAGCTGAA AAAGAGGGGGACAAGTACAATCTGAGCAAGAAGGAGCTGAA Direct Loss 0.952000597269544 0 NA NA prediction 0.904001194539088 Functional Loss - S100A1 ENSG00000160678 CDS Human protein_coding chr1:153603081 chr1:153603081 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3137 0 0 1 0 2 S100A1 chr1:153603138 5'GT 153603138 Upstream 58bp 3069 chr2 85818955 85818955 1 + G A HNSC 85818955 + 85818935 85818975 41 GGTGTGAAGCTGGCCGAACTGCAGCAGCGTTCAGACCAACT GGTGTGAAGCTGGCCGAACTACAGCAGCGTTCAGACCAACT Direct Loss 0.951996796106618 0 NA NA prediction 0.903993592213237 Functional Loss - VAMP5 ENSG00000168899 CDS Human protein_coding chr2:85818955 chr2:85818955 synonymous SNV . 0 21 hm7G_associated_SNPs_3139 0 0 0 0 1 VAMP5 chr2:85818985 5'GT 85818985 Upstream 31bp 3070 chrX 77380850 77380850 1 + G A OV 77380850 + 77380830 77380870 41 GAGACACTGCCACTTGCTGTGCCAAATGGAACACGGAGGAT GAGACACTGCCACTTGCTGTACCAAATGGAACACGGAGGAT Direct Loss 0.951992543289549 0 NA NA prediction 0.903985086579097 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77380850 chrX:77380850 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3140 0 0 1 2 2 PGK1 chrX:77380824 3'AG 77380824 Downstream 27bp 3071 chrX 77380850 77380850 1 + G A OV 77380850 + 77380830 77380870 41 GAGACACTGCCACTTGCTGTGCCAAATGGAACACGGAGGAT GAGACACTGCCACTTGCTGTACCAAATGGAACACGGAGGAT Direct Loss 0.951992543289549 0 NA NA prediction 0.903985086579097 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77380850 chrX:77380850 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3140 0 0 1 2 2 PGK1 chrX:77380922 5'GT 77380922 Upstream 73bp 3072 chr6 35715382 35715382 1 + G T LUAD 35715382 + 35715362 35715402 41 GTACGACTGCTGAGCTACCTGGCACAGAAGAATGACCTTCT GTACGACTGCTGAGCTACCTTGCACAGAAGAATGACCTTCT Direct Loss 0.951982842367343 0 NA NA prediction 0.903965684734687 Functional Loss - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715382 chr6:35715382 synonymous SNV . 0 21 hm7G_associated_SNPs_3143 0 0 0 0 2 ARMC12 chr6:35715353 3'AG 35715353 Downstream 30bp 3073 chr6 35715382 35715382 1 + G T LUAD 35715382 + 35715362 35715402 41 GTACGACTGCTGAGCTACCTGGCACAGAAGAATGACCTTCT GTACGACTGCTGAGCTACCTTGCACAGAAGAATGACCTTCT Direct Loss 0.951982842367343 0 NA NA prediction 0.903965684734687 Functional Loss - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715382 chr6:35715382 synonymous SNV . 0 21 hm7G_associated_SNPs_3143 0 0 0 0 2 ARMC12 chr6:35715424 5'GT 35715424 Upstream 43bp 3074 chrX 37664306 37664306 1 + G T COAD 37664306 + 37664286 37664326 41 TGCCAGTGAAGATGTGTTCAGCTATGAGGTGGTGATGTTAG TGCCAGTGAAGATGTGTTCATCTATGAGGTGGTGATGTTAG Direct Loss 0.951979563152064 0 NA NA prediction 0.903959126304128 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37664306 chrX:37664306 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3144 0 0 0 0 1 CYBB chrX:37664259 3'AG 37664259 Downstream 48bp 3075 chr15 33023158 33023158 1 + G A LGG 33023158 + 33023138 33023178 41 GTGACGGAGCGCAAATACCTGAAGCGAGACTGGTGCAAAAC GTGACGGAGCGCAAATACCTAAAGCGAGACTGGTGCAAAAC Direct Loss 0.95197921631901 0 NA NA prediction 0.903958432638019 Functional Loss - GREM1 ENSG00000166923 CDS Human protein_coding chr15:33023158 chr15:33023158 synonymous SNV . 0 21 hm7G_associated_SNPs_3145 0 0 0 0 1 GREM1 chr15:33023129 3'AG 33023129 Downstream 30bp 3076 chr2 27660137 27660137 1 + G A COAD 27660137 + 27660117 27660157 41 TCCTCACTGAAGATGGCAGTGCTGGAGATTCAGGGCAATGG TCCTCACTGAAGATGGCAGTACTGGAGATTCAGGGCAATGG Direct Loss 0.951977285587475 0 NA NA prediction 0.90395457117495 Functional Loss - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27660137 chr2:27660137 synonymous SNV . 0 21 hm7G_associated_SNPs_3146 0 0 1 0 1 NRBP1 chr2:27660129 3'AG 27660129 Downstream 9bp 3077 chr21 41300949 41300949 1 + G A SKCM 41300949 + 41300929 41300969 41 GAAGAATTTGACATTGACATGGATGCACCAGAGACAGAACG GAAGAATTTGACATTGACATAGATGCACCAGAGACAGAACG Direct Loss 0.951977143291759 0 NA NA prediction 0.903954286583517 Functional Loss - PCP4 ENSG00000183036 CDS Human protein_coding chr21:41300949 chr21:41300949 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3147 0 0 0 0 1 PCP4 chr21:41300909 3'AG 41300909 Downstream 41bp 3078 chr20 2411632 2411632 1 + G T LUAD 2411632 + 2411612 2411652 41 GTGAAGGACTGTGCGCTGATGGTGGAGGGCAGCGGCCTTCT GTGAAGGACTGTGCGCTGATTGTGGAGGGCAGCGGCCTTCT Direct Loss 0.951957184389369 0 NA NA prediction 0.903914368778738 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2411632 chr20:2411632 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_3150 0 0 0 0 2 TGM6 chr20:2411540 3'AG 2411540 Downstream 93bp 3079 chr20 2411632 2411632 1 + G T LUAD 2411632 + 2411612 2411652 41 GTGAAGGACTGTGCGCTGATGGTGGAGGGCAGCGGCCTTCT GTGAAGGACTGTGCGCTGATTGTGGAGGGCAGCGGCCTTCT Direct Loss 0.951957184389369 0 NA NA prediction 0.903914368778738 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2411632 chr20:2411632 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_3150 0 0 0 0 2 TGM6 chr20:2411673 5'GT 2411673 Upstream 42bp 3080 chr1 26751934 26751934 1 + G A LGG 26751934 + 26751914 26751954 41 TGTATTGGGAGTGAGAGGCGGCCAAAAGGAAAGAGCATGCA TGTATTGGGAGTGAGAGGCGACCAAAAGGAAAGAGCATGCA Direct Loss 0.951943241477156 0 NA NA prediction 0.903886482954313 Functional Loss - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26751934 chr1:26751934 synonymous SNV . 0 21 hm7G_associated_SNPs_3151 0 0 0 0 1 LIN28A chr1:26751978 5'GT 26751978 Upstream 45bp 3081 chr3 167512470 167512470 1 + G A LUSC 167512470 + 167512450 167512490 41 AAGTCCTAGAAATACCATATGAAGGAGATGAAATAAGCATG AAGTCCTAGAAATACCATATAAAGGAGATGAAATAAGCATG Direct Loss 0.951941061276102 0 NA NA prediction 0.903882122552204 Functional Loss - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167512470 chr3:167512470 nonsynonymous SNV 0.750 4 21 hm7G_associated_SNPs_3152 0 0 0 0 1 SERPINI1 chr3:167512408 3'AG 167512408 Downstream 63bp 3082 chr17 37360844 37360844 1 + G A THCA 37360844 + 37360824 37360864 41 CGCCGTGAAGAGCGCCTCCAGGCCAAGAAGGAGGAGATCAT CGCCGTGAAGAGCGCCTCCAAGCCAAGAAGGAGGAGATCAT Direct Loss 0.951935295414861 0 NA NA prediction 0.903870590829721 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37360844 chr17:37360844 synonymous SNV . 0 21 hm7G_associated_SNPs_3153 0 0 1 0 1 RPL19 chr17:37360778 3'AG 37360778 Downstream 67bp 3083 chr8 120101930 120101930 1 + G A SKCM 120101930 + 120101910 120101950 41 TTTCAAAAGGAGATGATGGTGAAAAAGGAGATCCAGGAGAA TTTCAAAAGGAGATGATGGTAAAAAAGGAGATCCAGGAGAA Direct Loss 0.95193438812745 0 NA NA prediction 0.9038687762549 Functional Loss - COLEC10 ENSG00000184374 CDS Human protein_coding chr8:120101930 chr8:120101930 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_3154 0 0 0 0 2 COLEC10 chr8:120101919 3'AG 120101919 Downstream 12bp 3084 chr8 120101930 120101930 1 + G A SKCM 120101930 + 120101910 120101950 41 TTTCAAAAGGAGATGATGGTGAAAAAGGAGATCCAGGAGAA TTTCAAAAGGAGATGATGGTAAAAAAGGAGATCCAGGAGAA Direct Loss 0.95193438812745 0 NA NA prediction 0.9038687762549 Functional Loss - COLEC10 ENSG00000184374 CDS Human protein_coding chr8:120101930 chr8:120101930 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_3154 0 0 0 0 2 COLEC10 chr8:120101990 5'GT 120101990 Upstream 61bp 3085 chr19 16199925 16199925 1 + G A LUSC 16199925 + 16199905 16199945 41 AATCTCTGGAGGCTGCATCTGAAAAGGTAGGTGGTTGGCTT AATCTCTGGAGGCTGCATCTAAAAAGGTAGGTGGTTGGCTT Direct Loss 0.951929615972032 0 NA NA prediction 0.903859231944063 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16199925 chr19:16199925 nonsynonymous SNV 0.955 2 21 hm7G_associated_SNPs_3155 0 0 1 0 2 TPM4 chr19:16199855 3'AG 16199855 Downstream 71bp 3086 chr19 16199925 16199925 1 + G A LUSC 16199925 + 16199905 16199945 41 AATCTCTGGAGGCTGCATCTGAAAAGGTAGGTGGTTGGCTT AATCTCTGGAGGCTGCATCTAAAAAGGTAGGTGGTTGGCTT Direct Loss 0.951929615972032 0 NA NA prediction 0.903859231944063 Functional Loss - TPM4 ENSG00000167460 CDS Human protein_coding chr19:16199925 chr19:16199925 nonsynonymous SNV 0.955 2 21 hm7G_associated_SNPs_3155 0 0 1 0 2 TPM4 chr19:16199930 5'GT 16199930 Upstream 6bp 3087 chr1 150280534 150280534 1 + G T BLCA 150280534 + 150280514 150280554 41 TTAAGCATCGGCGGTATTATGAGAAGCCATGCCGCCGGCGA TTAAGCATCGGCGGTATTATTAGAAGCCATGCCGCCGGCGA Direct Loss 0.951911071178439 0 NA NA prediction 0.903822142356878 Functional Loss - MRPS21 ENSG00000187145 CDS Human other chr1:150280534 chr1:150280534 stopgain 0.999 0 21 hm7G_associated_SNPs_3156 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 53bp 3088 chr15 44085281 44085281 1 + G T LUSC 44085281 + 44085261 44085301 41 TGCTGCCGCCCGCAAGCAGAGGTAGCCCCAGGGAGGGGAGG TGCTGCCGCCCGCAAGCAGATGTAGCCCCAGGGAGGGGAGG Direct Loss 0.951903031868152 0 NA NA prediction 0.903806063736303 Functional Loss - SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085281 chr15:44085281 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3157 0 0 1 0 1 SERF2 chr15:44085281 5'GT 44085281 Upstream 1bp 3089 chr2 27247054 27247054 1 + G C HNSC 27247054 + 27247034 27247074 41 AATTCTTTGACGCAAACTATGATGGAAAGGATTACAACCCT AATTCTTTGACGCAAACTATCATGGAAAGGATTACAACCCT Direct Loss 0.951891132134541 0 NA NA prediction 0.903782264269082 Functional Loss - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27247054 chr2:27247054 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_3159 0 0 1 0 1 MAPRE3 chr2:27246964 3'AG 27246964 Downstream 91bp 3090 chr12 56511292 56511292 1 + G C BRCA 56511292 + 56511272 56511312 41 GCGCAAAAGAAGAAAGATGAGGCAGAGGTCCAAGTAAACCG GCGCAAAAGAAGAAAGATGACGCAGAGGTCCAAGTAAACCG Direct Loss 0.951890969423427 0 NA NA prediction 0.903781938846855 Functional Loss - RPL41 ENSG00000229117 CDS Human protein_coding chr12:56511292 chr12:56511292 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3160 0 0 1 0 1 RPL41 chr12:56511266 3'AG 56511266 Downstream 27bp 3091 chr19 804306 804306 1 + G T SARC 804306 + 804286 804326 41 CAACAGGCCTTCATCGAGATGAACACGGAGGAGGCTGCCAA CAACAGGCCTTCATCGAGATTAACACGGAGGAGGCTGCCAA Direct Loss 0.951884648388716 0 NA NA prediction 0.903769296777433 Functional Loss - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804306 chr19:804306 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_3162 0 0 1 0 1 PTBP1 chr19:804292 3'AG 804292 Downstream 15bp 3092 chr11 69465973 69465973 1 + G T LUAD 69465973 + 69465953 69465993 41 AGAACATGGACCCCAAGGCCGCCGAGGAGGAGGAAGAGGAG AGAACATGGACCCCAAGGCCTCCGAGGAGGAGGAAGAGGAG Direct Loss 0.951878952202212 0 NA NA prediction 0.903757904404424 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69465973 chr11:69465973 nonsynonymous SNV 0.136 0 21 hm7G_associated_SNPs_3165 0 0 1 0 1 CCND1 chr11:69465886 3'AG 69465886 Downstream 88bp 3093 chr19 30303902 30303902 1 + G T LUSC 30303902 + 30303882 30303922 41 CAGGATCCAGATGAAGAAATGGCCAAAATCGACAGGACGGC CAGGATCCAGATGAAGAAATTGCCAAAATCGACAGGACGGC Direct Loss 0.95187849951079 0 NA NA prediction 0.90375699902158 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30303902 chr19:30303902 nonsynonymous SNV 0.991 0 21 hm7G_associated_SNPs_3166 0 0 1 0 2 CCNE1 chr19:30303876 3'AG 30303876 Downstream 27bp 3094 chr19 30303902 30303902 1 + G T LUSC 30303902 + 30303882 30303922 41 CAGGATCCAGATGAAGAAATGGCCAAAATCGACAGGACGGC CAGGATCCAGATGAAGAAATTGCCAAAATCGACAGGACGGC Direct Loss 0.95187849951079 0 NA NA prediction 0.90375699902158 Functional Loss - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30303902 chr19:30303902 nonsynonymous SNV 0.991 0 21 hm7G_associated_SNPs_3166 0 0 1 0 2 CCNE1 chr19:30303944 5'GT 30303944 Upstream 43bp 3095 chr1 151016195 151016195 1 + G A SKCM 151016195 + 151016175 151016215 41 CGTCAGTGTTACCGTACCCTGGATCGGCGGTGAGACCTGGG CGTCAGTGTTACCGTACCCTAGATCGGCGGTGAGACCTGGG Direct Loss 0.951872186873198 0 NA NA prediction 0.903744373746397 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151016195 chr1:151016195 synonymous SNV . 0 21 hm7G_associated_SNPs_3167 0 0 0 0 1 BNIPL chr1:151016203 5'GT 151016203 Upstream 9bp 3096 chr1 27179263 27179263 1 + G T GBM 27179263 + 27179243 27179283 41 GATCAAAGGCTCGTGGTCCAGCAAGAGGGGCGGTGAGGCCT GATCAAAGGCTCGTGGTCCATCAAGAGGGGCGGTGAGGCCT Direct Loss 0.951861091695977 0 NA NA prediction 0.903722183391954 Functional Loss - ZDHHC18 ENSG00000204160 CDS Human protein_coding chr1:27179263 chr1:27179263 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3168 0 0 1 0 2 ZDHHC18 chr1:27179244 3'AG 27179244 Downstream 20bp 3097 chr1 27179263 27179263 1 + G T GBM 27179263 + 27179243 27179283 41 GATCAAAGGCTCGTGGTCCAGCAAGAGGGGCGGTGAGGCCT GATCAAAGGCTCGTGGTCCATCAAGAGGGGCGGTGAGGCCT Direct Loss 0.951861091695977 0 NA NA prediction 0.903722183391954 Functional Loss - ZDHHC18 ENSG00000204160 CDS Human protein_coding chr1:27179263 chr1:27179263 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3168 0 0 1 0 2 ZDHHC18 chr1:27179356 5'GT 27179356 Upstream 94bp 3098 chr1 161197766 161197766 1 + G A CESC 161197766 + 161197746 161197786 41 ACCCTAGGAAATCCTGACCTGATTGGGGAGTCGGGTGAGGA ACCCTAGGAAATCCTGACCTAATTGGGGAGTCGGGTGAGGA Direct Loss 0.951805061401105 0 NA NA prediction 0.90361012280221 Functional Loss - TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161197766 chr1:161197766 synonymous SNV . 0 21 hm7G_associated_SNPs_3170 0 0 1 1 1 TOMM40L chr1:161197674 3'AG 161197674 Downstream 93bp 3099 chr2 233546345 233546345 1 + G T STAD 233546345 + 233546325 233546365 41 GAAGCAGAGTTGAAAGCTGAGCAAGATGAGCGGAAGCGGGA GAAGCAGAGTTGAAAGCTGATCAAGATGAGCGGAAGCGGGA Direct Loss 0.951794669328053 0 NA NA prediction 0.903589338656106 Functional Loss - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233546345 chr2:233546345 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3171 0 0 0 0 1 EFHD1 chr2:233546295 3'AG 233546295 Downstream 51bp 3100 chr7 75612892 75612892 1 + G A BLCA 75612892 + 75612872 75612912 41 GTCACCACCAACCGGAAGCTGAACCAGGGAACCGAGCGCCA GTCACCACCAACCGGAAGCTAAACCAGGGAACCGAGCGCCA Direct Loss 0.9517900852401 0 NA NA prediction 0.903580170480201 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75612892 chr7:75612892 synonymous SNV . 0 21 hm7G_associated_SNPs_3172 0 0 1 0 2 POR chr7:75612838 3'AG 75612838 Downstream 55bp 3101 chr7 75612892 75612892 1 + G A BLCA 75612892 + 75612872 75612912 41 GTCACCACCAACCGGAAGCTGAACCAGGGAACCGAGCGCCA GTCACCACCAACCGGAAGCTAAACCAGGGAACCGAGCGCCA Direct Loss 0.9517900852401 0 NA NA prediction 0.903580170480201 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75612892 chr7:75612892 synonymous SNV . 0 21 hm7G_associated_SNPs_3172 0 0 1 0 2 POR chr7:75612954 5'GT 75612954 Upstream 63bp 3102 chr6 84563428 84563428 1 + G A CESC 84563428 + 84563408 84563448 41 CCGCAGATACGCAGGCTTCTGGAGACCCTGGGTGGACGCCG CCGCAGATACGCAGGCTTCTAGAGACCCTGGGTGGACGCCG Direct Loss 0.951768093990585 0 NA NA prediction 0.90353618798117 Functional Loss - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563428 chr6:84563428 stopgain 0.996 0 21 hm7G_associated_SNPs_3173 0 0 0 0 2 RIPPLY2 chr6:84563414 3'AG 84563414 Downstream 15bp 3103 chr6 84563428 84563428 1 + G A CESC 84563428 + 84563408 84563448 41 CCGCAGATACGCAGGCTTCTGGAGACCCTGGGTGGACGCCG CCGCAGATACGCAGGCTTCTAGAGACCCTGGGTGGACGCCG Direct Loss 0.951768093990585 0 NA NA prediction 0.90353618798117 Functional Loss - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84563428 chr6:84563428 stopgain 0.996 0 21 hm7G_associated_SNPs_3173 0 0 0 0 2 RIPPLY2 chr6:84563492 5'GT 84563492 Upstream 65bp 3104 chr3 122811274 122811274 1 + G T COAD 122811274 + 122811254 122811294 41 GAAAGGACAAGGGACCATCTGCTGGGTGGACTGTGGGTATG GAAAGGACAAGGGACCATCTTCTGGGTGGACTGTGGGTATG Direct Loss 0.951744538868785 0 NA NA prediction 0.90348907773757 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122811274 chr3:122811274 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3177 0 0 1 1 2 PDIA5 chr3:122811202 3'AG 122811202 Downstream 73bp 3105 chr3 122811274 122811274 1 + G T COAD 122811274 + 122811254 122811294 41 GAAAGGACAAGGGACCATCTGCTGGGTGGACTGTGGGTATG GAAAGGACAAGGGACCATCTTCTGGGTGGACTGTGGGTATG Direct Loss 0.951744538868785 0 NA NA prediction 0.90348907773757 Functional Loss - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122811274 chr3:122811274 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3177 0 0 1 1 2 PDIA5 chr3:122811289 5'GT 122811289 Upstream 16bp 3106 chr7 65338472 65338472 1 + G A BLCA 65338472 + 65338452 65338492 41 TACGCCTACCACGTGGAGCGGGAGAAGGAGCGGGACCCCGA TACGCCTACCACGTGGAGCGAGAGAAGGAGCGGGACCCCGA Direct Loss 0.951743303420144 0 NA NA prediction 0.903486606840288 Functional Loss - VKORC1L1 ENSG00000196715 CDS Human protein_coding chr7:65338472 chr7:65338472 synonymous SNV . 0 21 hm7G_associated_SNPs_3178 0 0 1 0 1 VKORC1L1 chr7:65338552 5'GT 65338552 Upstream 81bp 3107 chr2 238475676 238475676 1 + G C LUSC 238475676 + 238475656 238475696 41 CCCTGACATCAATCCTGCCTGGTACGCCAGTCGCGGGATCA CCCTGACATCAATCCTGCCTCGTACGCCAGTCGCGGGATCA Direct Loss 0.951731593547863 0 NA NA prediction 0.903463187095727 Functional Loss - PRLH ENSG00000071677 CDS Human protein_coding chr2:238475676 chr2:238475676 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_3180 0 0 0 0 1 PRLH chr2:238475655 3'AG 238475655 Downstream 22bp 3108 chr6 35438389 35438389 1 + G A BLCA 35438389 + 35438369 35438409 41 GCTGTAGCTGTTGGTCACGTGAAGATGACAGACGATGAGCT GCTGTAGCTGTTGGTCACGTAAAGATGACAGACGATGAGCT Direct Loss 0.951721268838302 0 NA NA prediction 0.903442537676605 Functional Loss - RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438389 chr6:35438389 synonymous SNV . 0 21 hm7G_associated_SNPs_3181 0 0 1 0 1 RPL10A chr6:35438357 3'AG 35438357 Downstream 33bp 3109 chr3 52836730 52836730 1 + G A SKCM 52836730 + 52836710 52836750 41 GAGGTGGACATGAAGGAGATGGAGAAGGCCCTGCAGGAGCG GAGGTGGACATGAAGGAGATAGAGAAGGCCCTGCAGGAGCG Direct Loss 0.951707644254587 0 NA NA prediction 0.903415288509174 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836730 chr3:52836730 nonsynonymous SNV 0.978 0 21 hm7G_associated_SNPs_3183 0 0 1 0 2 ITIH3 chr3:52836683 3'AG 52836683 Downstream 48bp 3110 chr3 52836730 52836730 1 + G A SKCM 52836730 + 52836710 52836750 41 GAGGTGGACATGAAGGAGATGGAGAAGGCCCTGCAGGAGCG GAGGTGGACATGAAGGAGATAGAGAAGGCCCTGCAGGAGCG Direct Loss 0.951707644254587 0 NA NA prediction 0.903415288509174 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836730 chr3:52836730 nonsynonymous SNV 0.978 0 21 hm7G_associated_SNPs_3183 0 0 1 0 2 ITIH3 chr3:52836822 5'GT 52836822 Upstream 93bp 3111 chrX 153421822 153421822 1 + G A LUSC 153421822 + 153421802 153421842 41 CAGAAGGCAGAGAAGGAAGTGACGCGCATGGTGGTGGTGAT CAGAAGGCAGAGAAGGAAGTAACGCGCATGGTGGTGGTGAT Direct Loss 0.951705411030966 0 NA NA prediction 0.903410822061931 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153421822 chrX:153421822 synonymous SNV . 0 21 hm7G_associated_SNPs_3184 0 0 0 0 1 OPN1LW chrX:153421769 3'AG 153421769 Downstream 54bp 3112 chr1 228285603 228285603 1 + G A CESC 228285603 + 228285583 228285623 41 ATCACAGACAAGCTGGGGCTGCACTCACTACGCCACAGGAA ATCACAGACAAGCTGGGGCTACACTCACTACGCCACAGGAA Direct Loss 0.951694470451165 0 NA NA prediction 0.903388940902331 Functional Loss - ARF1 ENSG00000143761 CDS Human protein_coding chr1:228285603 chr1:228285603 synonymous SNV . 0 21 hm7G_associated_SNPs_3185 0 0 1 1 1 ARF1 chr1:228285553 3'AG 228285553 Downstream 51bp 3113 chr15 41022087 41022087 1 + G T UCEC 41022087 + 41022067 41022107 41 TAATCACTAATCAGGTGGTAGCTCAAGTGGATGGAGCAGCG TAATCACTAATCAGGTGGTATCTCAAGTGGATGGAGCAGCG Direct Loss 0.951682737008831 0 NA NA prediction 0.903365474017661 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41022087 chr15:41022087 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3186 0 0 1 3 2 RAD51 chr15:41022051 3'AG 41022051 Downstream 37bp 3114 chr15 41022087 41022087 1 + G T UCEC 41022087 + 41022067 41022107 41 TAATCACTAATCAGGTGGTAGCTCAAGTGGATGGAGCAGCG TAATCACTAATCAGGTGGTATCTCAAGTGGATGGAGCAGCG Direct Loss 0.951682737008831 0 NA NA prediction 0.903365474017661 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41022087 chr15:41022087 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3186 0 0 1 3 2 RAD51 chr15:41022172 5'GT 41022172 Upstream 86bp 3115 chr1 28862414 28862414 1 + G A HNSC 28862414 + 28862394 28862434 41 GTCCCCAAGTGTGTGATGCTGAAATCCAGGGGAAGCCGGGG GTCCCCAAGTGTGTGATGCTAAAATCCAGGGGAAGCCGGGG Direct Loss 0.951680347554009 0 NA NA prediction 0.903360695108019 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28862414 chr1:28862414 synonymous SNV . 0 21 hm7G_associated_SNPs_3187 0 0 1 0 1 RCC1 chr1:28862383 3'AG 28862383 Downstream 32bp 3116 chr14 75469769 75469769 1 + G A rs141355163 75469769 + 75469749 75469789 41 TGGAGACCCTGAAGCGGGGTGGTGGGCCGCGCAGCTCCGAG TGGAGACCCTGAAGCGGGGTAGTGGGCCGCGCAGCTCCGAG Direct Loss 0.951669790379176 0 NA NA prediction 0.903339580758352 Functional Loss - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75469769 chr14:75469769 nonsynonymous SNV 0.271 2 21 hm7G_associated_SNPs_3189 0 0 1 0 1 EIF2B2 chr14:75469856 5'GT 75469856 Upstream 88bp 3117 chr5 157159978 157159978 1 + G A LUSC 157159978 + 157159958 157159998 41 GAAGAACTAGAGGATATTGTGATCGCGTATGGACAGAGTGA GAAGAACTAGAGGATATTGTAATCGCGTATGGACAGAGTGA Direct Loss 0.951655776556456 0 NA NA prediction 0.903311553112911 Functional Loss - THG1L ENSG00000113272 CDS Human protein_coding chr5:157159978 chr5:157159978 synonymous SNV . 0 21 hm7G_associated_SNPs_3191 0 0 1 0 1 THG1L chr5:157160052 5'GT 157160052 Upstream 75bp 3118 chr4 41263914 41263914 1 + G T LUSC 41263914 + 41263894 41263934 41 CCATACAGGCAGCCCATGATGCCGTGGCACAGGAAGGCCAA CCATACAGGCAGCCCATGATTCCGTGGCACAGGAAGGCCAA Direct Loss 0.951648285164261 0 NA NA prediction 0.903296570328523 Functional Loss - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41263914 chr4:41263914 nonsynonymous SNV 0.856 0 21 hm7G_associated_SNPs_3192 0 0 1 0 2 UCHL1 chr4:41263893 3'AG 41263893 Downstream 22bp 3119 chr4 41263914 41263914 1 + G T LUSC 41263914 + 41263894 41263934 41 CCATACAGGCAGCCCATGATGCCGTGGCACAGGAAGGCCAA CCATACAGGCAGCCCATGATTCCGTGGCACAGGAAGGCCAA Direct Loss 0.951648285164261 0 NA NA prediction 0.903296570328523 Functional Loss - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41263914 chr4:41263914 nonsynonymous SNV 0.856 0 21 hm7G_associated_SNPs_3192 0 0 1 0 2 UCHL1 chr4:41263940 5'GT 41263940 Upstream 27bp 3120 chr7 107234402 107234402 1 + G T SARC 107234402 + 107234382 107234422 41 TCTTTTGTTCTGTAATAGATGCTGTGAGAGAAGTAAGGAAA TCTTTTGTTCTGTAATAGATTCTGTGAGAGAAGTAAGGAAA Direct Loss 0.951641923972143 0 NA NA prediction 0.903283847944285 Functional Loss - BCAP29 ENSG00000075790 CDS Human protein_coding chr7:107234402 chr7:107234402 nonsynonymous SNV 0.990 3 21 hm7G_associated_SNPs_3193 0 0 1 0 1 BCAP29 chr7:107234400 3'AG 107234400 Downstream 3bp 3121 chrX 23701803 23701803 1 + G T LIHC 23701803 + 23701783 23701823 41 TTTAGTCTGCCCTGCTGGCTGGAAACCTGGTAGTGAAACAG TTTAGTCTGCCCTGCTGGCTTGAAACCTGGTAGTGAAACAG Direct Loss 0.951636332515742 0 NA NA prediction 0.903272665031485 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23701803 chrX:23701803 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3194 0 0 1 0 2 PRDX4 chrX:23701788 3'AG 23701788 Downstream 16bp 3122 chrX 23701803 23701803 1 + G T LIHC 23701803 + 23701783 23701823 41 TTTAGTCTGCCCTGCTGGCTGGAAACCTGGTAGTGAAACAG TTTAGTCTGCCCTGCTGGCTTGAAACCTGGTAGTGAAACAG Direct Loss 0.951636332515742 0 NA NA prediction 0.903272665031485 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23701803 chrX:23701803 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3194 0 0 1 0 2 PRDX4 chrX:23701822 5'GT 23701822 Upstream 20bp 3123 chr15 75335866 75335866 1 + G A CESC 75335866 + 75335846 75335886 41 TCACCCTCTACAGCGACGCTGATGAATGGGAGGTCAGTGCT TCACCCTCTACAGCGACGCTAATGAATGGGAGGTCAGTGCT Direct Loss 0.951587624269438 0 NA NA prediction 0.903175248538876 Functional Loss - PPCDC ENSG00000138621 CDS Human protein_coding chr15:75335866 chr15:75335866 nonsynonymous SNV 0.984 1 21 hm7G_associated_SNPs_3197 0 0 0 0 2 PPCDC chr15:75335782 3'AG 75335782 Downstream 85bp 3124 chr15 75335866 75335866 1 + G A CESC 75335866 + 75335846 75335886 41 TCACCCTCTACAGCGACGCTGATGAATGGGAGGTCAGTGCT TCACCCTCTACAGCGACGCTAATGAATGGGAGGTCAGTGCT Direct Loss 0.951587624269438 0 NA NA prediction 0.903175248538876 Functional Loss - PPCDC ENSG00000138621 CDS Human protein_coding chr15:75335866 chr15:75335866 nonsynonymous SNV 0.984 1 21 hm7G_associated_SNPs_3197 0 0 0 0 2 PPCDC chr15:75335877 5'GT 75335877 Upstream 12bp 3125 chr3 41277900 41277900 1 + G C STAD 41277900 + 41277880 41277920 41 CAGGGGTCCTCTGTGAACTTGCTCAGGACAAGGAAGCTGCA CAGGGGTCCTCTGTGAACTTCCTCAGGACAAGGAAGCTGCA Direct Loss 0.951586781514581 0 NA NA prediction 0.903173563029162 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41277900 chr3:41277900 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3198 0 0 1 0 2 CTNNB1 chr3:41277840 3'AG 41277840 Downstream 61bp 3126 chr3 41277900 41277900 1 + G C STAD 41277900 + 41277880 41277920 41 CAGGGGTCCTCTGTGAACTTGCTCAGGACAAGGAAGCTGCA CAGGGGTCCTCTGTGAACTTCCTCAGGACAAGGAAGCTGCA Direct Loss 0.951586781514581 0 NA NA prediction 0.903173563029162 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41277900 chr3:41277900 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3198 0 0 1 0 2 CTNNB1 chr3:41277990 5'GT 41277990 Upstream 91bp 3127 chr5 140034120 140034120 1 + G A LGG 140034120 + 140034100 140034140 41 GGTACGAGCTGAGATTGCCAGCAAAGAGAAAGAGGAAGAGG GGTACGAGCTGAGATTGCCAACAAAGAGAAAGAGGAAGAGG Direct Loss 0.951585280164008 0 NA NA prediction 0.903170560328015 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140034120 chr5:140034120 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3199 0 0 1 0 2 IK chr5:140034101 3'AG 140034101 Downstream 20bp 3128 chr5 140034120 140034120 1 + G A LGG 140034120 + 140034100 140034140 41 GGTACGAGCTGAGATTGCCAGCAAAGAGAAAGAGGAAGAGG GGTACGAGCTGAGATTGCCAACAAAGAGAAAGAGGAAGAGG Direct Loss 0.951585280164008 0 NA NA prediction 0.903170560328015 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140034120 chr5:140034120 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3199 0 0 1 0 2 IK chr5:140034171 5'GT 140034171 Upstream 52bp 3129 chr9 116116549 116116549 1 + G T TGCT 116116549 + 116116529 116116569 41 GTGGACCAGTGTGAGAGGCTGCAGTTACAGAGTGCTGCCAT GTGGACCAGTGTGAGAGGCTTCAGTTACAGAGTGCTGCCAT Direct Loss 0.951575273194586 0 NA NA prediction 0.903150546389172 Functional Loss - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116116549 chr9:116116549 synonymous SNV . 0 21 hm7G_associated_SNPs_3200 0 0 1 0 2 BSPRY chr9:116116520 3'AG 116116520 Downstream 30bp 3130 chr9 116116549 116116549 1 + G T TGCT 116116549 + 116116529 116116569 41 GTGGACCAGTGTGAGAGGCTGCAGTTACAGAGTGCTGCCAT GTGGACCAGTGTGAGAGGCTTCAGTTACAGAGTGCTGCCAT Direct Loss 0.951575273194586 0 NA NA prediction 0.903150546389172 Functional Loss - BSPRY ENSG00000119411 CDS Human protein_coding chr9:116116549 chr9:116116549 synonymous SNV . 0 21 hm7G_associated_SNPs_3200 0 0 1 0 2 BSPRY chr9:116116618 5'GT 116116618 Upstream 70bp 3131 chr21 38098506 38098506 1 + G T UCEC 38098506 + 38098486 38098526 41 TGCTACCAGATTGTGGGGCTGGTGGCCGTGGGCCAGTCGCT TGCTACCAGATTGTGGGGCTTGTGGCCGTGGGCCAGTCGCT Direct Loss 0.951556406102596 0 NA NA prediction 0.903112812205192 Functional Loss - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38098506 chr21:38098506 synonymous SNV . 0 21 hm7G_associated_SNPs_3201 0 0 1 0 1 SIM2 chr21:38098420 3'AG 38098420 Downstream 87bp 3132 chr12 56505000 56505000 1 + G A STAD 56505000 + 56504980 56505020 41 CAGTTTAAATTTACAGTTCTGCTCATGCCCAATGGCCCCAT CAGTTTAAATTTACAGTTCTACTCATGCCCAATGGCCCCAT Direct Loss 0.951551986653528 0 NA NA prediction 0.903103973307055 Functional Loss - PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56505000 chr12:56505000 synonymous SNV . 0 21 hm7G_associated_SNPs_3203 0 0 1 0 2 PA2G4 chr12:56504966 3'AG 56504966 Downstream 35bp 3133 chr12 56505000 56505000 1 + G A STAD 56505000 + 56504980 56505020 41 CAGTTTAAATTTACAGTTCTGCTCATGCCCAATGGCCCCAT CAGTTTAAATTTACAGTTCTACTCATGCCCAATGGCCCCAT Direct Loss 0.951551986653528 0 NA NA prediction 0.903103973307055 Functional Loss - PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56505000 chr12:56505000 synonymous SNV . 0 21 hm7G_associated_SNPs_3203 0 0 1 0 2 PA2G4 chr12:56505093 5'GT 56505093 Upstream 94bp 3134 chr18 12277206 12277206 1 + G A SKCM 12277206 + 12277186 12277226 41 ACATACATGCTCCGGGTGCTGGATGACAAGGAAGAGCGGCC ACATACATGCTCCGGGTGCTAGATGACAAGGAAGAGCGGCC Direct Loss 0.951545702720432 0 NA NA prediction 0.903091405440865 Functional Loss - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12277206 chr18:12277206 synonymous SNV . 0 21 hm7G_associated_SNPs_3204 0 0 0 0 1 CIDEA chr18:12277122 3'AG 12277122 Downstream 85bp 3135 chr12 54970479 54970479 1 + G A UCEC 54970479 + 54970459 54970499 41 AGAAATGGAAGGAACGGGCAGCAAGTGGTGGGTACCATGGC AGAAATGGAAGGAACGGGCAACAAGTGGTGGGTACCATGGC Direct Loss 0.951526596100165 0 NA NA prediction 0.90305319220033 Functional Loss - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54970479 chr12:54970479 nonsynonymous SNV 0.793 1 21 hm7G_associated_SNPs_3206 0 0 0 0 1 PDE1B chr12:54970485 5'GT 54970485 Upstream 7bp 3136 chr5 33462211 33462211 1 + G T rs112666038 33462211 + 33462191 33462231 41 TTTTTCTTTATAGCCATGATGGTGATGATAAGAAAAGGCCA TTTTTCTTTATAGCCATGATTGTGATGATAAGAAAAGGCCA Direct Loss 0.951526077580522 0 NA NA prediction 0.903052155161044 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33462211 chr5:33462211 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3208 0 0 1 0 2 TARS chr5:33462204 3'AG 33462204 Downstream 8bp 3137 chr5 33462211 33462211 1 + G T rs112666038 33462211 + 33462191 33462231 41 TTTTTCTTTATAGCCATGATGGTGATGATAAGAAAAGGCCA TTTTTCTTTATAGCCATGATTGTGATGATAAGAAAAGGCCA Direct Loss 0.951526077580522 0 NA NA prediction 0.903052155161044 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33462211 chr5:33462211 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3208 0 0 1 0 2 TARS chr5:33462308 5'GT 33462308 Upstream 98bp 3138 chr16 105814 105814 1 + G A rs79411281 105814 + 105794 105834 41 AGTGCCACAGTCCTGGACCTGAAGAAGGCCATCCAGAGATA AGTGCCACAGTCCTGGACCTAAAGAAGGCCATCCAGAGATA Direct Loss 0.951512250147987 0 NA NA prediction 0.903024500295975 Functional Loss - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:105814 chr16:105814 synonymous SNV . 0 21 hm7G_associated_SNPs_3211 0 0 1 0 2 SNRNP25 chr16:105777 3'AG 105777 Downstream 38bp 3139 chr16 105814 105814 1 + G A rs79411281 105814 + 105794 105834 41 AGTGCCACAGTCCTGGACCTGAAGAAGGCCATCCAGAGATA AGTGCCACAGTCCTGGACCTAAAGAAGGCCATCCAGAGATA Direct Loss 0.951512250147987 0 NA NA prediction 0.903024500295975 Functional Loss - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:105814 chr16:105814 synonymous SNV . 0 21 hm7G_associated_SNPs_3211 0 0 1 0 2 SNRNP25 chr16:105882 5'GT 105882 Upstream 69bp 3140 chr10 135122932 135122932 1 + G T LUAD 135122932 + 135122912 135122952 41 CACCTCTACCTCCAGGACGTGATCATGCAGGTGGCCGACGT CACCTCTACCTCCAGGACGTTATCATGCAGGTGGCCGACGT Direct Loss 0.951502735680384 0 NA NA prediction 0.903005471360768 Functional Loss - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135122932 chr10:135122932 synonymous SNV . 0 21 hm7G_associated_SNPs_3212 0 0 1 0 1 ZNF511 chr10:135122967 5'GT 135122967 Upstream 36bp 3141 chr10 96535218 96535218 1 + G T LUSC 96535218 + 96535198 96535238 41 TCATGACGCTGCGGAATTTTGGGATGGGGAAGAGGAGCATT TCATGACGCTGCGGAATTTTTGGATGGGGAAGAGGAGCATT Direct Loss 0.951493718964831 0 NA NA prediction 0.902987437929663 Functional Loss - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96535218 chr10:96535218 nonsynonymous SNV 0.847 3 21 hm7G_associated_SNPs_3213 0 0 0 0 1 CYP2C19 chr10:96535147 3'AG 96535147 Downstream 72bp 3142 chr6 112382402 112382402 1 + G A OV 112382402 + 112382382 112382422 41 CAAGCAACCAGGGGAAATCTGCAATGAAGCTGACCTCTGTG CAAGCAACCAGGGGAAATCTACAATGAAGCTGACCTCTGTG Direct Loss 0.951472538838117 0 NA NA prediction 0.902945077676234 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112382402 chr6:112382402 nonsynonymous SNV 0.947 5 21 hm7G_associated_SNPs_3216 0 0 0 2 1 WISP3 chr6:112382491 5'GT 112382491 Upstream 90bp 3143 chr11 113265802 113265802 1 + G A UCEC 113265802 + 113265782 113265822 41 ACCTAAATATGATGTGTACAGGTGAGAAGGAGGCCTGGCGT ACCTAAATATGATGTGTACAAGTGAGAAGGAGGCCTGGCGT Direct Loss 0.951459254588572 0 NA NA prediction 0.902918509177144 Functional Loss - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113265802 chr11:113265802 nonsynonymous SNV 0.545 3 21 hm7G_associated_SNPs_3218 0 0 0 0 1 ANKK1 chr11:113265802 5'GT 113265802 Upstream 1bp 3144 chr10 95275195 95275195 1 + G A BLCA 95275195 + 95275175 95275215 41 ATCAGCAGTGGCTCGTGTATGATCAGCAGCGGGAAGTCTAT ATCAGCAGTGGCTCGTGTATAATCAGCAGCGGGAAGTCTAT Direct Loss 0.951455884167709 0 NA NA prediction 0.902911768335418 Functional Loss - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95275195 chr10:95275195 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3219 0 0 1 0 1 CEP55 chr10:95275162 3'AG 95275162 Downstream 34bp 3145 chr5 901523 901523 1 + G A SKCM 901523 + 901503 901543 41 CAACAGCAACCTCATCACCTGGAACCGGGTGGTGCTGCTCC CAACAGCAACCTCATCACCTAGAACCGGGTGGTGCTGCTCC Direct Loss 0.95143442844897 0 NA NA prediction 0.902868856897939 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:901523 chr5:901523 stopgain 0.997 1 21 hm7G_associated_SNPs_3220 0 0 1 0 2 TRIP13 chr5:901456 3'AG 901456 Downstream 68bp 3146 chr5 901523 901523 1 + G A SKCM 901523 + 901503 901543 41 CAACAGCAACCTCATCACCTGGAACCGGGTGGTGCTGCTCC CAACAGCAACCTCATCACCTAGAACCGGGTGGTGCTGCTCC Direct Loss 0.95143442844897 0 NA NA prediction 0.902868856897939 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:901523 chr5:901523 stopgain 0.997 1 21 hm7G_associated_SNPs_3220 0 0 1 0 2 TRIP13 chr5:901546 5'GT 901546 Upstream 24bp 3147 chr8 56866538 56866538 1 + G A SKCM 56866538 + 56866518 56866558 41 TGGGCAGTTTGGGGAAGTCTGGATGGGTAAGTGTGCGGCTC TGGGCAGTTTGGGGAAGTCTAGATGGGTAAGTGTGCGGCTC Direct Loss 0.951434140766179 0 NA NA prediction 0.902868281532359 Functional Loss - LYN ENSG00000254087 CDS Human protein_coding chr8:56866538 chr8:56866538 stopgain 1.000 1 21 hm7G_associated_SNPs_3221 0 0 1 0 1 LYN chr8:56866543 5'GT 56866543 Upstream 6bp 3148 chr9 35800738 35800738 1 + G C BLCA 35800738 + 35800718 35800758 41 TACTCGGGAGCTGAGAAGCAGATTTGGTGGACGGGACGGCC TACTCGGGAGCTGAGAAGCACATTTGGTGGACGGGACGGCC Direct Loss 0.951430332825352 0 NA NA prediction 0.902860665650703 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35800738 chr9:35800738 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3222 0 0 0 0 1 NPR2 chr9:35800706 3'AG 35800706 Downstream 33bp 3149 chr3 132390646 132390646 1 + G A COAD 132390646 + 132390626 132390666 41 TAATGAACTTGGACAAACATGGATGGAATCTGGGGTCAGTG TAATGAACTTGGACAAACATAGATGGAATCTGGGGTCAGTG Direct Loss 0.951411014564889 0 NA NA prediction 0.902822029129778 Functional Loss - UBA5 ENSG00000081307 CDS Human protein_coding chr3:132390646 chr3:132390646 stopgain 1.000 1 21 hm7G_associated_SNPs_3223 0 0 1 0 2 UBA5 chr3:132390621 3'AG 132390621 Downstream 26bp 3150 chr3 132390646 132390646 1 + G A COAD 132390646 + 132390626 132390666 41 TAATGAACTTGGACAAACATGGATGGAATCTGGGGTCAGTG TAATGAACTTGGACAAACATAGATGGAATCTGGGGTCAGTG Direct Loss 0.951411014564889 0 NA NA prediction 0.902822029129778 Functional Loss - UBA5 ENSG00000081307 CDS Human protein_coding chr3:132390646 chr3:132390646 stopgain 1.000 1 21 hm7G_associated_SNPs_3223 0 0 1 0 2 UBA5 chr3:132390725 5'GT 132390725 Upstream 80bp 3151 chr6 36106666 36106666 1 + G T SARC 36106666 + 36106646 36106686 41 GCCCCTGCAGCTGCGGACCTGCTGGAGAAGATGCTGGAGCT GCCCCTGCAGCTGCGGACCTTCTGGAGAAGATGCTGGAGCT Direct Loss 0.951410390230883 0 NA NA prediction 0.902820780461765 Functional Loss - MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36106666 chr6:36106666 nonsynonymous SNV 0.976 1 21 hm7G_associated_SNPs_3224 0 0 1 1 1 MAPK13 chr6:36106656 3'AG 36106656 Downstream 11bp 3152 chr1 48701540 48701540 1 + G A BLCA 48701540 + 48701520 48701560 41 TCAACAGAGCAGGAGCTGATGGTGGTGGGCAGGTGCGCCGG TCAACAGAGCAGGAGCTGATAGTGGTGGGCAGGTGCGCCGG Direct Loss 0.951405567913948 0 NA NA prediction 0.902811135827897 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48701540 chr1:48701540 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3225 0 0 1 0 1 SLC5A9 chr1:48701551 5'GT 48701551 Upstream 12bp 3153 chr11 6631001 6631001 1 + G A BRCA 6631001 + 6630981 6631021 41 GTGAAGTTTGCTTTGGACATGGCAAGGGGCATGGCCTTCCT GTGAAGTTTGCTTTGGACATAGCAAGGGGCATGGCCTTCCT Direct Loss 0.951397040780804 0 NA NA prediction 0.902794081561608 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6631001 chr11:6631001 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3226 0 0 1 0 2 ILK chr11:6630955 3'AG 6630955 Downstream 47bp 3154 chr11 6631001 6631001 1 + G A BRCA 6631001 + 6630981 6631021 41 GTGAAGTTTGCTTTGGACATGGCAAGGGGCATGGCCTTCCT GTGAAGTTTGCTTTGGACATAGCAAGGGGCATGGCCTTCCT Direct Loss 0.951397040780804 0 NA NA prediction 0.902794081561608 Functional Loss - ILK ENSG00000166333 CDS Human protein_coding chr11:6631001 chr11:6631001 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3226 0 0 1 0 2 ILK chr11:6631076 5'GT 6631076 Upstream 76bp 3155 chr20 56136647 56136647 1 + G A SKCM 56136647 + 56136627 56136667 41 GGGCGGCTTCTGGGCCAGATGGAGGAAGAGGGCATCCTCAG GGGCGGCTTCTGGGCCAGATAGAGGAAGAGGGCATCCTCAG Direct Loss 0.951381863037671 0 NA NA prediction 0.902763726075342 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56136647 chr20:56136647 nonsynonymous SNV 0.105 2 21 hm7G_associated_SNPs_3227 0 0 1 0 1 PCK1 chr20:56136691 5'GT 56136691 Upstream 45bp 3156 chr17 33456653 33456653 1 + G A SKCM 33456653 + 33456633 33456673 41 GCAGCCAACACAGCTGGGGTGGGGAAGTGGTGCAAGCCCTA GCAGCCAACACAGCTGGGGTAGGGAAGTGGTGCAAGCCCTA Direct Loss 0.951374131862758 0 NA NA prediction 0.902748263725516 Functional Loss - FNDC8 ENSG00000073598 CDS Human protein_coding chr17:33456653 chr17:33456653 synonymous SNV . 0 21 hm7G_associated_SNPs_3229 0 0 0 0 1 FNDC8 chr17:33456677 5'GT 33456677 Upstream 25bp 3157 chr19 2098087 2098087 1 + G A PAAD 2098087 + 2098067 2098107 41 GACCATCTCCTGCAACAACTGCACAGACTCGCACGTCGCCT GACCATCTCCTGCAACAACTACACAGACTCGCACGTCGCCT Direct Loss 0.951366765046661 0 NA NA prediction 0.902733530093322 Functional Loss - IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2098087 chr19:2098087 nonsynonymous SNV 0.989 3 21 hm7G_associated_SNPs_3230 0 0 1 0 2 IZUMO4 chr19:2098051 3'AG 2098051 Downstream 37bp 3158 chr19 2098087 2098087 1 + G A PAAD 2098087 + 2098067 2098107 41 GACCATCTCCTGCAACAACTGCACAGACTCGCACGTCGCCT GACCATCTCCTGCAACAACTACACAGACTCGCACGTCGCCT Direct Loss 0.951366765046661 0 NA NA prediction 0.902733530093322 Functional Loss - IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2098087 chr19:2098087 nonsynonymous SNV 0.989 3 21 hm7G_associated_SNPs_3230 0 0 1 0 2 IZUMO4 chr19:2098126 5'GT 2098126 Upstream 40bp 3159 chr10 17278348 17278348 1 + G A HNSC 17278348 + 17278328 17278368 41 CACTCAAAAAGGACACTTCTGATTAAGACGGTTGAAACTAG CACTCAAAAAGGACACTTCTAATTAAGACGGTTGAAACTAG Direct Loss 0.951355560534599 0 NA NA prediction 0.902711121069198 Functional Loss - VIM ENSG00000026025 CDS Human protein_coding chr10:17278348 chr10:17278348 synonymous SNV . 0 21 hm7G_associated_SNPs_3231 0 0 1 1 2 VIM chr10:17278293 3'AG 17278293 Downstream 56bp 3160 chr10 17278348 17278348 1 + G A HNSC 17278348 + 17278328 17278368 41 CACTCAAAAAGGACACTTCTGATTAAGACGGTTGAAACTAG CACTCAAAAAGGACACTTCTAATTAAGACGGTTGAAACTAG Direct Loss 0.951355560534599 0 NA NA prediction 0.902711121069198 Functional Loss - VIM ENSG00000026025 CDS Human protein_coding chr10:17278348 chr10:17278348 synonymous SNV . 0 21 hm7G_associated_SNPs_3231 0 0 1 1 2 VIM chr10:17278378 5'GT 17278378 Upstream 31bp 3161 chrX 48652266 48652266 1 + G T UCEC 48652266 + 48652246 48652286 41 ACCGCAAGGCATCTGGAAAAGGGAAAAAGAAACGGGGCTCC ACCGCAAGGCATCTGGAAAATGGAAAAAGAAACGGGGCTCC Direct Loss 0.951348452625731 0 NA NA prediction 0.902696905251461 Functional Loss - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48652266 chrX:48652266 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3232 0 0 0 0 1 GATA1 chrX:48652200 3'AG 48652200 Downstream 67bp 3162 chr17 46627737 46627737 1 + G A CESC 46627737 + 46627717 46627757 41 CGCTTCTTGGATTCTACCCTGAGGAGGAGGCGCGTGGTGAG CGCTTCTTGGATTCTACCCTAAGGAGGAGGCGCGTGGTGAG Direct Loss 0.951328219022525 0 NA NA prediction 0.90265643804505 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46627737 chr17:46627737 stopgain 1.000 1 21 hm7G_associated_SNPs_3233 0 0 1 0 2 HOXB3 chr17:46627702 3'AG 46627702 Downstream 36bp 3163 chr17 46627737 46627737 1 + G A CESC 46627737 + 46627717 46627757 41 CGCTTCTTGGATTCTACCCTGAGGAGGAGGCGCGTGGTGAG CGCTTCTTGGATTCTACCCTAAGGAGGAGGCGCGTGGTGAG Direct Loss 0.951328219022525 0 NA NA prediction 0.90265643804505 Functional Loss - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46627737 chr17:46627737 stopgain 1.000 1 21 hm7G_associated_SNPs_3233 0 0 1 0 2 HOXB3 chr17:46627764 5'GT 46627764 Upstream 28bp 3164 chr6 127476502 127476502 1 + G A SKCM 127476502 + 127476482 127476522 41 AAATAATACAGCATCCTTCAGCAAAGGGTAACCTGTGTCCC AAATAATACAGCATCCTTCAACAAAGGGTAACCTGTGTCCC Direct Loss 0.951325255538016 0 NA NA prediction 0.902650511076032 Functional Loss - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127476502 chr6:127476502 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_3234 0 0 0 0 1 RSPO3 chr6:127476583 5'GT 127476583 Upstream 82bp 3165 chr10 104620104 104620104 1 + G A GBM 104620104 + 104620084 104620124 41 TCCAGCTGCTAGGTCAGGCAGCTCGAAACATGGTACTCCAG TCCAGCTGCTAGGTCAGGCAACTCGAAACATGGTACTCCAG Direct Loss 0.951317096161618 0 NA NA prediction 0.902634192323237 Functional Loss - BORCS7 ENSG00000166275;ENSG00000270316 CDS Human other chr10:104620104 chr10:104620104 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3235 0 0 1 0 2 BORCS7 chr10:104620089 3'AG 104620089 Downstream 16bp 3166 chr10 104620104 104620104 1 + G A GBM 104620104 + 104620084 104620124 41 TCCAGCTGCTAGGTCAGGCAGCTCGAAACATGGTACTCCAG TCCAGCTGCTAGGTCAGGCAACTCGAAACATGGTACTCCAG Direct Loss 0.951317096161618 0 NA NA prediction 0.902634192323237 Functional Loss - BORCS7 ENSG00000166275;ENSG00000270316 CDS Human other chr10:104620104 chr10:104620104 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3235 0 0 1 0 2 BORCS7 chr10:104620151 5'GT 104620151 Upstream 48bp 3167 chr2 96933387 96933387 1 + G A SKCM 96933387 + 96933367 96933407 41 TAACCACTCTCGAGGGCCATGAAAATGAGGTCAAGTCAGTG TAACCACTCTCGAGGGCCATAAAAATGAGGTCAAGTCAGTG Direct Loss 0.951307265949458 0 NA NA prediction 0.902614531898916 Functional Loss - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933387 chr2:96933387 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3237 0 0 1 0 1 CIAO1 chr2:96933474 5'GT 96933474 Upstream 88bp 3168 chr13 53254191 53254191 1 + G T BLCA 53254191 + 53254171 53254211 41 GAGATCAAAGAAGAAGAAAAGAATGAAAAGTTGGAGGGAGA GAGATCAAAGAAGAAGAAAATAATGAAAAGTTGGAGGGAGA Direct Loss 0.951300200727605 0 NA NA prediction 0.90260040145521 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53254191 chr13:53254191 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3239 0 0 1 0 2 SUGT1 chr13:53254109 3'AG 53254109 Downstream 83bp 3169 chr13 53254191 53254191 1 + G T BLCA 53254191 + 53254171 53254211 41 GAGATCAAAGAAGAAGAAAAGAATGAAAAGTTGGAGGGAGA GAGATCAAAGAAGAAGAAAATAATGAAAAGTTGGAGGGAGA Direct Loss 0.951300200727605 0 NA NA prediction 0.90260040145521 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53254191 chr13:53254191 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3239 0 0 1 0 2 SUGT1 chr13:53254290 5'GT 53254290 Upstream 100bp 3170 chrX 153994631 153994631 1 + G A UCEC 153994631 + 153994611 153994651 41 GACTGGTTGTTTAATCGTGTGCATAGAACGAGCCACTCGCT GACTGGTTGTTTAATCGTGTACATAGAACGAGCCACTCGCT Direct Loss 0.951289664326648 0 NA NA prediction 0.902579328653295 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:153994631 chrX:153994631 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3240 0 0 1 0 1 DKC1 chrX:153994675 5'GT 153994675 Upstream 45bp 3171 chr19 47112165 47112165 1 + G A LUAD 47112165 + 47112145 47112185 41 ATGACGAACCTGGGGGAGAAGCTGACCGATGAGGAGGTGGA ATGACGAACCTGGGGGAGAAACTGACCGATGAGGAGGTGGA Direct Loss 0.951264060378671 0 NA NA prediction 0.902528120757342 Functional Loss - CALM3 ENSG00000160014 CDS Human protein_coding chr19:47112165 chr19:47112165 synonymous SNV . 0 21 hm7G_associated_SNPs_3243 0 0 1 0 2 CALM3 chr19:47112103 3'AG 47112103 Downstream 63bp 3172 chr19 47112165 47112165 1 + G A LUAD 47112165 + 47112145 47112185 41 ATGACGAACCTGGGGGAGAAGCTGACCGATGAGGAGGTGGA ATGACGAACCTGGGGGAGAAACTGACCGATGAGGAGGTGGA Direct Loss 0.951264060378671 0 NA NA prediction 0.902528120757342 Functional Loss - CALM3 ENSG00000160014 CDS Human protein_coding chr19:47112165 chr19:47112165 synonymous SNV . 0 21 hm7G_associated_SNPs_3243 0 0 1 0 2 CALM3 chr19:47112238 5'GT 47112238 Upstream 74bp 3173 chr16 82069287 82069287 1 + G A LUSC 82069287 + 82069267 82069307 41 GTGGATCAGAAGGCAGTCCTGGTGACAGGTAAGCAGACGGT GTGGATCAGAAGGCAGTCCTAGTGACAGGTAAGCAGACGGT Direct Loss 0.951262131148006 0 NA NA prediction 0.902524262296011 Functional Loss - HSD17B2 ENSG00000086696 CDS Human protein_coding chr16:82069287 chr16:82069287 synonymous SNV . 0 21 hm7G_associated_SNPs_3245 0 0 1 0 1 HSD17B2 chr16:82069294 5'GT 82069294 Upstream 8bp 3174 chr19 15655085 15655085 1 + G A SKCM 15655085 + 15655065 15655105 41 GGCCGGGAGCTGGAGGAGCTGGAGTGGTGAGTGTGGGGTCA GGCCGGGAGCTGGAGGAGCTAGAGTGGTGAGTGTGGGGTCA Direct Loss 0.951255984722922 0 NA NA prediction 0.902511969445844 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15655085 chr19:15655085 synonymous SNV . 0 21 hm7G_associated_SNPs_3246 0 0 0 0 1 CYP4F22 chr19:15655090 5'GT 15655090 Upstream 6bp 3175 chr22 26886054 26886054 1 + G T GBM 26886054 + 26886034 26886074 41 GAGCCTACCATCTTTTACATGCTCCATTGTGGGACGGCCTT GAGCCTACCATCTTTTACATTCTCCATTGTGGGACGGCCTT Direct Loss 0.951251880921354 0 NA NA prediction 0.902503761842709 Functional Loss - SRRD ENSG00000100104 CDS Human protein_coding chr22:26886054 chr22:26886054 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_3248 0 0 1 0 1 SRRD chr22:26886010 3'AG 26886010 Downstream 45bp 3176 chr8 145152203 145152203 1 + G A LUSC 145152203 + 145152183 145152223 41 CGGCACAAGTGGTCAGTCCTGAAGAGTCGGAAGCTGGCATA CGGCACAAGTGGTCAGTCCTAAAGAGTCGGAAGCTGGCATA Direct Loss 0.951251344901604 0 NA NA prediction 0.902502689803208 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145152203 chr8:145152203 synonymous SNV . 0 21 hm7G_associated_SNPs_3249 0 0 1 0 1 CYC1 chr8:145152135 3'AG 145152135 Downstream 69bp 3177 chr5 6749723 6749723 1 + G T LUSC 6749723 + 6749703 6749743 41 GGTGATTGACTACCGGAGGTGGATCAAAGAGAAGTGGGGCA GGTGATTGACTACCGGAGGTTGATCAAAGAGAAGTGGGGCA Direct Loss 0.951248900045936 0 NA NA prediction 0.902497800091873 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6749723 chr5:6749723 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3250 0 0 1 0 2 PAPD7 chr5:6749670 3'AG 6749670 Downstream 54bp 3178 chr5 6749723 6749723 1 + G T LUSC 6749723 + 6749703 6749743 41 GGTGATTGACTACCGGAGGTGGATCAAAGAGAAGTGGGGCA GGTGATTGACTACCGGAGGTTGATCAAAGAGAAGTGGGGCA Direct Loss 0.951248900045936 0 NA NA prediction 0.902497800091873 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6749723 chr5:6749723 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3250 0 0 1 0 2 PAPD7 chr5:6749770 5'GT 6749770 Upstream 48bp 3179 chrX 153667407 153667407 1 + G A COAD 153667407 + 153667387 153667427 41 ACTCGCTACCTGGACTTCAAGGTGGTGGAGGGCAGCTTTGT ACTCGCTACCTGGACTTCAAAGTGGTGGAGGGCAGCTTTGT Direct Loss 0.951227239019339 0 NA NA prediction 0.902454478038679 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GDI1 ENSG00000203879 CDS Human protein_coding chrX:153667407 chrX:153667407 synonymous SNV . 0 21 hm7G_associated_SNPs_3251 1 0 10 0 2 GDI1 chrX:153667352 3'AG 153667352 Downstream 56bp 3180 chrX 153667407 153667407 1 + G A COAD 153667407 + 153667387 153667427 41 ACTCGCTACCTGGACTTCAAGGTGGTGGAGGGCAGCTTTGT ACTCGCTACCTGGACTTCAAAGTGGTGGAGGGCAGCTTTGT Direct Loss 0.951227239019339 0 NA NA prediction 0.902454478038679 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment GDI1 ENSG00000203879 CDS Human protein_coding chrX:153667407 chrX:153667407 synonymous SNV . 0 21 hm7G_associated_SNPs_3251 1 0 10 0 2 GDI1 chrX:153667486 5'GT 153667486 Upstream 80bp 3181 chr2 55771494 55771494 1 + G A LUSC 55771494 + 55771474 55771514 41 AGCAGAAAGGAAAACCCACTGGGGAGGTAGAGGTATGGCTA AGCAGAAAGGAAAACCCACTAGGGAGGTAGAGGTATGGCTA Direct Loss 0.951226867869213 0 NA NA prediction 0.902453735738426 Functional Loss - CFAP36 ENSG00000163001 CDS Human protein_coding chr2:55771494 chr2:55771494 nonsynonymous SNV 0.936 0 21 hm7G_associated_SNPs_3252 0 0 1 0 1 CFAP36 chr2:55771505 5'GT 55771505 Upstream 12bp 3182 chr11 47377022 47377022 1 - C A HNSC 47377022 - 47377002 47377042 41 CGACATGAAGGACAGCATCTGGTGGGTGGACAAGGACAAGG CGACATGAAGGACAGCATCTTGTGGGTGGACAAGGACAAGG Direct Loss 0.951225351228424 0 NA NA prediction 0.902450702456847 Functional Loss - SPI1 ENSG00000066336 CDS Human protein_coding chr11:47377022 chr11:47377022 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3253 0 0 1 0 1 SPI1 chr11:47377097 3'AG 47377097 Downstream 76bp 3183 chr4 2464569 2464569 1 + G A rs549426580 2464569 + 2464549 2464589 41 GCGCAGCACTGGCTGGAGCTGGAGCGGAGCCGCGAGCGCAG GCGCAGCACTGGCTGGAGCTAGAGCGGAGCCGCGAGCGCAG Direct Loss 0.951211829662813 0 NA NA prediction 0.902423659325625 Functional Loss - CFAP99 ENSG00000249428 CDS Human other chr4:2464569 chr4:2464569 synonymous SNV . 0 21 hm7G_associated_SNPs_3255 0 0 0 0 1 CFAP99 chr4:2464537 3'AG 2464537 Downstream 33bp 3184 chr22 44592087 44592087 1 + G T THYM 44592087 + 44592067 44592107 41 CCGGAGAAAGTGAACGCAGTGAAAGAGGTAGGAGAGATCAA CCGGAGAAAGTGAACGCAGTTAAAGAGGTAGGAGAGATCAA Direct Loss 0.951210964166537 0 NA NA prediction 0.902421928333074 Functional Loss - PARVG ENSG00000138964 CDS Human other chr22:44592087 chr22:44592087 synonymous SNV . 0 21 hm7G_associated_SNPs_3256 0 0 0 0 3 PARVG chr22:44592035 3'AG 44592035 Downstream 53bp 3185 chr22 44592087 44592087 1 + G T THYM 44592087 + 44592067 44592107 41 CCGGAGAAAGTGAACGCAGTGAAAGAGGTAGGAGAGATCAA CCGGAGAAAGTGAACGCAGTTAAAGAGGTAGGAGAGATCAA Direct Loss 0.951210964166537 0 NA NA prediction 0.902421928333074 Functional Loss - PARVG ENSG00000138964 CDS Human protein_coding chr22:44592087 chr22:44592087 synonymous SNV . 0 21 hm7G_associated_SNPs_3256 0 0 0 0 3 PARVG chr22:44592037 3'AG 44592037 Downstream 51bp 3186 chr22 44592087 44592087 1 + G T THYM 44592087 + 44592067 44592107 41 CCGGAGAAAGTGAACGCAGTGAAAGAGGTAGGAGAGATCAA CCGGAGAAAGTGAACGCAGTTAAAGAGGTAGGAGAGATCAA Direct Loss 0.951210964166537 0 NA NA prediction 0.902421928333074 Functional Loss - PARVG ENSG00000138964 CDS Human protein_coding chr22:44592087 chr22:44592087 synonymous SNV . 0 21 hm7G_associated_SNPs_3256 0 0 0 0 3 PARVG chr22:44592093 5'GT 44592093 Upstream 7bp 3187 chr19 6466548 6466548 1 + G C LUAD 6466548 + 6466528 6466568 41 TTGCTCCTGGCTGTGGGGCTGGCACTGTTGGTGCGGAAGCT TTGCTCCTGGCTGTGGGGCTCGCACTGTTGGTGCGGAAGCT Direct Loss 0.951209542041964 0 NA NA prediction 0.902419084083929 Functional Loss - CRB3 ENSG00000130545 CDS Human protein_coding chr19:6466548 chr19:6466548 synonymous SNV . 0 21 hm7G_associated_SNPs_3257 0 0 0 0 1 CRB3 chr19:6466620 5'GT 6466620 Upstream 73bp 3188 chr14 67849272 67849272 1 + G C BLCA 67849272 + 67849252 67849292 41 CTGTTATCAAAGAGAAGATTGAGGAAAAGAGGGGTGTGTTC CTGTTATCAAAGAGAAGATTCAGGAAAAGAGGGGTGTGTTC Direct Loss 0.951207104290575 0 NA NA prediction 0.90241420858115 Functional Loss - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67849272 chr14:67849272 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3258 0 0 1 0 1 EIF2S1 chr14:67849307 5'GT 67849307 Upstream 36bp 3189 chr2 74717816 74717816 1 + G T BLCA 74717816 + 74717796 74717836 41 TGGCTGAGGAGCTGGTGGCTGAGGAGGAGCGCATGAAACAG TGGCTGAGGAGCTGGTGGCTTAGGAGGAGCGCATGAAACAG Direct Loss 0.951185689378632 0 NA NA prediction 0.902371378757265 Functional Loss - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74717816 chr2:74717816 stopgain 1.000 0 21 hm7G_associated_SNPs_3259 0 0 1 0 2 TTC31 chr2:74717783 3'AG 74717783 Downstream 34bp 3190 chr2 74717816 74717816 1 + G T BLCA 74717816 + 74717796 74717836 41 TGGCTGAGGAGCTGGTGGCTGAGGAGGAGCGCATGAAACAG TGGCTGAGGAGCTGGTGGCTTAGGAGGAGCGCATGAAACAG Direct Loss 0.951185689378632 0 NA NA prediction 0.902371378757265 Functional Loss - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74717816 chr2:74717816 stopgain 1.000 0 21 hm7G_associated_SNPs_3259 0 0 1 0 2 TTC31 chr2:74717866 5'GT 74717866 Upstream 51bp 3191 chr13 39613332 39613332 1 + G T BLCA 39613332 + 39613312 39613352 41 GAGAAAATTCTTTACCGGCTGGATGTGGGTTGGCCTAAGCA GAGAAAATTCTTTACCGGCTTGATGTGGGTTGGCCTAAGCA Direct Loss 0.951174977492656 0 NA NA prediction 0.902349954985311 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39613332 chr13:39613332 synonymous SNV . 0 21 hm7G_associated_SNPs_3262 0 0 1 0 2 NHLRC3 chr13:39613273 3'AG 39613273 Downstream 60bp 3192 chr13 39613332 39613332 1 + G T BLCA 39613332 + 39613312 39613352 41 GAGAAAATTCTTTACCGGCTGGATGTGGGTTGGCCTAAGCA GAGAAAATTCTTTACCGGCTTGATGTGGGTTGGCCTAAGCA Direct Loss 0.951174977492656 0 NA NA prediction 0.902349954985311 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39613332 chr13:39613332 synonymous SNV . 0 21 hm7G_associated_SNPs_3262 0 0 1 0 2 NHLRC3 chr13:39613425 5'GT 39613425 Upstream 94bp 3193 chr20 30363692 30363692 1 + G T PRAD 30363692 + 30363672 30363712 41 AGAAGTTTCTAAAAAGTACTGAGGAGCAAGAGCTGGAGAAG AGAAGTTTCTAAAAAGTACTTAGGAGCAAGAGCTGGAGAAG Direct Loss 0.951169219491672 0 NA NA prediction 0.902338438983344 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30363692 chr20:30363692 stopgain 1.000 1 21 hm7G_associated_SNPs_3263 0 0 1 0 2 TPX2 chr20:30363670 3'AG 30363670 Downstream 23bp 3194 chr20 30363692 30363692 1 + G T PRAD 30363692 + 30363672 30363712 41 AGAAGTTTCTAAAAAGTACTGAGGAGCAAGAGCTGGAGAAG AGAAGTTTCTAAAAAGTACTTAGGAGCAAGAGCTGGAGAAG Direct Loss 0.951169219491672 0 NA NA prediction 0.902338438983344 Functional Loss - TPX2 ENSG00000088325 CDS Human protein_coding chr20:30363692 chr20:30363692 stopgain 1.000 1 21 hm7G_associated_SNPs_3263 0 0 1 0 2 TPX2 chr20:30363791 5'GT 30363791 Upstream 100bp 3195 chr16 29127479 29127479 1 + G A UCEC 29127479 + 29127459 29127499 41 TTCCATCAACCAGACAATCTGCTTGCGGTTGGATAGCATTG TTCCATCAACCAGACAATCTACTTGCGGTTGGATAGCATTG Direct Loss 0.9511585628805 0 NA NA prediction 0.902317125761001 Functional Loss - RRN3P2 ENSG00000103472;ENSG00000260517 ncRNA_exonic Human other chr16:29127479 chr16:29127479 . . 0 21 hm7G_associated_SNPs_3264 0 0 0 0 1 RRN3P2 chr16:29127448 3'AG 29127448 Downstream 32bp 3196 chr12 102122937 102122937 1 - C T LUAD 102122937 - 102122917 102122957 41 TACTTACTGGTGCACAAAATGAATTTAAAAAAGAAATGGCT TACTTACTGGTGCACAAAATAAATTTAAAAAAGAAATGGCT Direct Loss 0.951145098865142 0 NA NA prediction 0.902290197730285 Functional Loss - SYCP3 ENSG00000139351 CDS Human protein_coding chr12:102122937 chr12:102122937 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3265 0 0 0 0 1 SYCP3 chr12:102122887 5'GT 102122887 Upstream 51bp 3197 chr4 17524602 17524602 1 + G A SKCM 17524602 + 17524582 17524622 41 GGCTTTGCCATTCTTAACATGATCCAGGTCCCGTACCGGGC GGCTTTGCCATTCTTAACATAATCCAGGTCCCGTACCGGGC Direct Loss 0.95114334654668 0 NA NA prediction 0.90228669309336 Functional Loss - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524602 chr4:17524602 nonsynonymous SNV 0.759 0 21 hm7G_associated_SNPs_3267 0 0 0 0 1 CLRN2 chr4:17524666 5'GT 17524666 Upstream 65bp 3198 chr15 63351850 63351850 1 + G C BRCA 63351850 + 63351830 63351870 41 TGAAAGAGGCCAAGCACATTGCTGAAGATGCCGACCGCAAA TGAAAGAGGCCAAGCACATTCCTGAAGATGCCGACCGCAAA Direct Loss 0.9511401414875 0 NA NA prediction 0.902280282975 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63351850 chr15:63351850 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3268 0 0 1 0 2 TPM1 chr15:63351762 3'AG 63351762 Downstream 89bp 3199 chr15 63351850 63351850 1 + G C BRCA 63351850 + 63351830 63351870 41 TGAAAGAGGCCAAGCACATTGCTGAAGATGCCGACCGCAAA TGAAAGAGGCCAAGCACATTCCTGAAGATGCCGACCGCAAA Direct Loss 0.9511401414875 0 NA NA prediction 0.902280282975 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63351850 chr15:63351850 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3268 0 0 1 0 2 TPM1 chr15:63351879 5'GT 63351879 Upstream 30bp 3200 chr2 207027515 207027515 1 + G A LUAD 207027515 + 207027495 207027535 41 TACAGTGTGTAGTTGAAGATGATAAAGTTGGAACAGATATG TACAGTGTGTAGTTGAAGATAATAAAGTTGGAACAGATATG Direct Loss 0.951135641846049 0 NA NA prediction 0.902271283692099 Functional Loss - EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207027515 chr2:207027515 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_3269 0 0 0 0 1 EEF1B2 chr2:207027453 3'AG 207027453 Downstream 63bp 3201 chr14 23302689 23302689 1 + G T GBM 23302689 + 23302669 23302709 41 AAGCTGAAAGGGAGACGTTTGCAGTGAGTGGTTAGAGCAAC AAGCTGAAAGGGAGACGTTTTCAGTGAGTGGTTAGAGCAAC Direct Loss 0.951132026185134 0 NA NA prediction 0.902264052370268 Functional Loss - MRPL52 ENSG00000172590 CDS Human protein_coding chr14:23302689 chr14:23302689 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3270 0 0 1 0 2 MRPL52 chr14:23302627 3'AG 23302627 Downstream 63bp 3202 chr14 23302689 23302689 1 + G T GBM 23302689 + 23302669 23302709 41 AAGCTGAAAGGGAGACGTTTGCAGTGAGTGGTTAGAGCAAC AAGCTGAAAGGGAGACGTTTTCAGTGAGTGGTTAGAGCAAC Direct Loss 0.951132026185134 0 NA NA prediction 0.902264052370268 Functional Loss - MRPL52 ENSG00000172590 CDS Human protein_coding chr14:23302689 chr14:23302689 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3270 0 0 1 0 2 MRPL52 chr14:23302691 5'GT 23302691 Upstream 3bp 3203 chr20 30689151 30689151 1 + G A OV 30689151 + 30689131 30689171 41 CCTGAAGTGATCCGAGCTCTGGAGCGTGGATACCGGATGCC CCTGAAGTGATCCGAGCTCTAGAGCGTGGATACCGGATGCC Direct Loss 0.95113135641847 0 NA NA prediction 0.90226271283694 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30689151 chr20:30689151 synonymous SNV . 0 21 hm7G_associated_SNPs_3271 0 0 0 0 1 HCK chr20:30689120 3'AG 30689120 Downstream 32bp 3204 chr19 36128426 36128426 1 + G T UCEC 36128426 + 36128406 36128446 41 GACGTGGTCCGCAAGAAGCAGAAGGAAAAGAAGAAGCTGGG GACGTGGTCCGCAAGAAGCATAAGGAAAAGAAGAAGCTGGG Direct Loss 0.951130364296431 0 NA NA prediction 0.902260728592863 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36128426 chr19:36128426 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3273 0 0 1 0 1 RBM42 chr19:36128344 3'AG 36128344 Downstream 83bp 3205 chr9 138439057 138439057 1 + G A SKCM 138439057 + 138439037 138439077 41 TGCATCCAGAAGAAAATCCTGATGCGGAAGACGGAGGAGCC TGCATCCAGAAGAAAATCCTAATGCGGAAGACGGAGGAGCC Direct Loss 0.951119562271314 0 NA NA prediction 0.902239124542627 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439057 chr9:138439057 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_3274 0 0 0 0 2 OBP2A chr9:138439024 3'AG 138439024 Downstream 34bp 3206 chr9 138439057 138439057 1 + G A SKCM 138439057 + 138439037 138439077 41 TGCATCCAGAAGAAAATCCTGATGCGGAAGACGGAGGAGCC TGCATCCAGAAGAAAATCCTAATGCGGAAGACGGAGGAGCC Direct Loss 0.951119562271314 0 NA NA prediction 0.902239124542627 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439057 chr9:138439057 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_3274 0 0 0 0 2 OBP2A chr9:138439094 5'GT 138439094 Upstream 38bp 3207 chr3 3170763 3170763 1 + G A LUSC 3170763 + 3170743 3170783 41 CATTGGCACAGGCCAGTGCTGAACCGTAGGTGGAGTAGGCT CATTGGCACAGGCCAGTGCTAAACCGTAGGTGGAGTAGGCT Direct Loss 0.951109172895478 0 NA NA prediction 0.902218345790955 Functional Loss - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3170763 chr3:3170763 synonymous SNV . 0 21 hm7G_associated_SNPs_3275 0 0 1 0 1 TRNT1 chr3:3170698 3'AG 3170698 Downstream 66bp 3208 chr12 53800431 53800431 1 + G T UCEC 53800431 + 53800411 53800451 41 ATGGAATACATGATGACACAGCAGGTGGAGAGGAAGGAGAA ATGGAATACATGATGACACATCAGGTGGAGAGGAAGGAGAA Direct Loss 0.951096749398188 0 NA NA prediction 0.902193498796376 Functional Loss - SP1 ENSG00000185591 CDS Human protein_coding chr12:53800431 chr12:53800431 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3276 0 0 1 0 1 SP1 chr12:53800369 3'AG 53800369 Downstream 63bp 3209 chr1 150316917 150316917 1 + G A LUAD 150316917 + 150316897 150316937 41 CCTGTCACGACAGAGCGCATGAAGAGGCCAACGCTGCCCGA CCTGTCACGACAGAGCGCATAAAGAGGCCAACGCTGCCCGA Direct Loss 0.951068230888384 0 NA NA prediction 0.902136461776768 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150316917 chr1:150316917 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3278 0 0 1 3 2 PRPF3 chr1:150316852 3'AG 150316852 Downstream 66bp 3210 chr1 150316917 150316917 1 + G A LUAD 150316917 + 150316897 150316937 41 CCTGTCACGACAGAGCGCATGAAGAGGCCAACGCTGCCCGA CCTGTCACGACAGAGCGCATAAAGAGGCCAACGCTGCCCGA Direct Loss 0.951068230888384 0 NA NA prediction 0.902136461776768 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150316917 chr1:150316917 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3278 0 0 1 3 2 PRPF3 chr1:150316910 3'AG 150316910 Downstream 8bp 3211 chr12 7069996 7069996 1 + G A UCEC 7069996 + 7069976 7070016 41 GAGGATGTGTATGAGAACCTGCACACTAAGAACAAGAGGGA GAGGATGTGTATGAGAACCTACACACTAAGAACAAGAGGGA Direct Loss 0.951063071175697 0 NA NA prediction 0.902126142351394 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7069996 chr12:7069996 nonsynonymous SNV 0.613 1 21 hm7G_associated_SNPs_3280 0 0 0 0 1 PTPN6 chr12:7069969 3'AG 7069969 Downstream 28bp 3212 chr3 142403123 142403123 1 + G T TGCT 142403123 + 142403103 142403143 41 GCATTGTTAAATGAAGGTGAGGAACTAGAGGAGCTGATGAA GCATTGTTAAATGAAGGTGATGAACTAGAGGAGCTGATGAA Direct Loss 0.95104583666569 0 NA NA prediction 0.90209167333138 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142403123 chr3:142403123 nonsynonymous SNV 0.957 3 21 hm7G_associated_SNPs_3281 0 0 1 0 1 PLS1 chr3:142403095 3'AG 142403095 Downstream 29bp 3213 chr8 110348368 110348368 1 + G A HNSC 110348368 + 110348348 110348388 41 GATGTCCAGGTTAGCAAGATGAACAAAGATGCGCAGATGAG GATGTCCAGGTTAGCAAGATAAACAAAGATGCGCAGATGAG Direct Loss 0.951045425459634 0 NA NA prediction 0.902090850919268 Functional Loss - ENY2 ENSG00000120533 CDS Human protein_coding chr8:110348368 chr8:110348368 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3282 0 0 1 0 2 ENY2 chr8:110348357 3'AG 110348357 Downstream 12bp 3214 chr8 110348368 110348368 1 + G A HNSC 110348368 + 110348348 110348388 41 GATGTCCAGGTTAGCAAGATGAACAAAGATGCGCAGATGAG GATGTCCAGGTTAGCAAGATAAACAAAGATGCGCAGATGAG Direct Loss 0.951045425459634 0 NA NA prediction 0.902090850919268 Functional Loss - ENY2 ENSG00000120533 CDS Human protein_coding chr8:110348368 chr8:110348368 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3282 0 0 1 0 2 ENY2 chr8:110348433 5'GT 110348433 Upstream 66bp 3215 chr12 2912353 2912353 1 + G A STAD 2912353 + 2912333 2912373 41 CCTCAGGAGACCATCCCACTGACACAGAGATGAAGGAGGAG CCTCAGGAGACCATCCCACTAACACAGAGATGAAGGAGGAG Direct Loss 0.951044052398242 0 NA NA prediction 0.902088104796484 Functional Loss - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2912353 chr12:2912353 nonsynonymous SNV 0.216 0 21 hm7G_associated_SNPs_3283 0 0 1 0 1 FKBP4 chr12:2912317 3'AG 2912317 Downstream 37bp 3216 chr6 47775959 47775959 1 + G C LUAD 47775959 + 47775939 47775979 41 CAGTGGTGTCTGTGTGGTCAGCTTTTGGAAGGCCAGACTCC CAGTGGTGTCTGTGTGGTCACCTTTTGGAAGGCCAGACTCC Direct Loss 0.951037206503924 0 NA NA prediction 0.902074413007847 Functional Loss - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47775959 chr6:47775959 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3284 0 0 0 0 1 OPN5 chr6:47775890 3'AG 47775890 Downstream 70bp 3217 chr11 62475843 62475843 1 + G T KIRC 62475843 + 62475823 62475863 41 TGGTGGAACAGCTTAAGATTGAAGCCAGCTTGTGTCGGATA TGGTGGAACAGCTTAAGATTTAAGCCAGCTTGTGTCGGATA Direct Loss 0.951029643840057 0 NA NA prediction 0.902059287680113 Functional Loss - GNG3 ENSG00000162188 CDS Human protein_coding chr11:62475843 chr11:62475843 stopgain 1.000 1 21 hm7G_associated_SNPs_3285 0 0 0 0 2 HNRNPUL2-BSCL2 chr11:62475767 3'AG 62475767 Downstream 77bp 3218 chr11 62475843 62475843 1 + G T KIRC 62475843 + 62475823 62475863 41 TGGTGGAACAGCTTAAGATTGAAGCCAGCTTGTGTCGGATA TGGTGGAACAGCTTAAGATTTAAGCCAGCTTGTGTCGGATA Direct Loss 0.951029643840057 0 NA NA prediction 0.902059287680113 Functional Loss - GNG3 ENSG00000162188 CDS Human protein_coding chr11:62475843 chr11:62475843 stopgain 1.000 1 21 hm7G_associated_SNPs_3285 0 0 0 0 2 GNG3 chr11:62475866 5'GT 62475866 Upstream 24bp 3219 chrX 84525120 84525120 1 + G C LUAD 84525120 + 84525100 84525140 41 TAAACAAAAAGCCAAAAAGAGGAGAAGGGGAGAAACCAGGC TAAACAAAAAGCCAAAAAGACGAGAAGGGGAGAAACCAGGC Direct Loss 0.951013215315565 0 NA NA prediction 0.902026430631131 Functional Loss - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84525120 chrX:84525120 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3288 0 0 1 0 1 ZNF711 chrX:84525152 5'GT 84525152 Upstream 33bp 3220 chr12 8205396 8205396 1 + G A SARC 8205396 + 8205376 8205416 41 GGCCATCAGTGCCACCTCCTGGTGCCAATGAGGAGATCCCT GGCCATCAGTGCCACCTCCTAGTGCCAATGAGGAGATCCCT Direct Loss 0.951000517585699 0 NA NA prediction 0.902001035171398 Functional Loss - FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8205396 chr12:8205396 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3289 0 0 0 0 1 FOXJ2 chr12:8205358 3'AG 8205358 Downstream 39bp 3221 chr9 90387832 90387832 1 + G T UCEC 90387832 + 90387812 90387852 41 AGAGCAGTGTGGCAGAACATGAAGATGATTGAGCAGCACAA AGAGCAGTGTGGCAGAACATTAAGATGATTGAGCAGCACAA Direct Loss 0.950981192246092 0 NA NA prediction 0.901962384492184 Functional Loss - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90387832 chr9:90387832 . . 0 21 hm7G_associated_SNPs_3291 0 0 0 0 1 CTSL3P chr9:90387913 5'GT 90387913 Upstream 82bp 3222 chr20 30667655 30667655 1 + G T LUSC 30667655 + 30667635 30667675 41 AACATGCTGGGCTCCTTCATGATCCGGGATAGCGAGACCAC AACATGCTGGGCTCCTTCATTATCCGGGATAGCGAGACCAC Direct Loss 0.950967850471237 0 NA NA prediction 0.901935700942474 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30667655 chr20:30667655 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3294 0 0 0 0 2 HCK chr20:30667577 3'AG 30667577 Downstream 79bp 3223 chr20 30667655 30667655 1 + G T LUSC 30667655 + 30667635 30667675 41 AACATGCTGGGCTCCTTCATGATCCGGGATAGCGAGACCAC AACATGCTGGGCTCCTTCATTATCCGGGATAGCGAGACCAC Direct Loss 0.950967850471237 0 NA NA prediction 0.901935700942474 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30667655 chr20:30667655 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3294 0 0 0 0 2 HCK chr20:30667680 5'GT 30667680 Upstream 26bp 3224 chr4 128814717 128814717 1 + G A LUAD 128814717 + 128814697 128814737 41 CATAATTTCAGAAGAGGAAAGGAAAACTAGGAGTGCTCCCT CATAATTTCAGAAGAGGAAAAGAAAACTAGGAGTGCTCCCT Direct Loss 0.950952899223375 0 NA NA prediction 0.90190579844675 Functional Loss - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128814717 chr4:128814717 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_3295 0 0 1 0 1 PLK4 chr4:128814759 5'GT 128814759 Upstream 43bp 3225 chr3 119445149 119445149 1 + G T LUSC 119445149 + 119445129 119445169 41 AGAGGAGGAAAATGATGAATGAAATGGAGAGGAAGGAGTGG AGAGGAGGAAAATGATGAATTAAATGGAGAGGAAGGAGTGG Direct Loss 0.950929122154219 0 NA NA prediction 0.901858244308438 Functional Loss - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119445149 chr3:119445149 stopgain 0.982 0 21 hm7G_associated_SNPs_3297 0 0 0 0 1 MAATS1 chr3:119445195 5'GT 119445195 Upstream 47bp 3226 chr15 68122534 68122534 1 + G C CESC 68122534 + 68122514 68122554 41 TTTGTTGCCTTCAAGAGCCAGATAAGGAAGACAATCACTCG TTTGTTGCCTTCAAGAGCCACATAAGGAAGACAATCACTCG Direct Loss 0.950928407557585 0 NA NA prediction 0.901856815115169 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68122534 chr15:68122534 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_3298 0 0 0 0 1 SKOR1 chr15:68122529 3'AG 68122529 Downstream 6bp 3227 chr11 46760858 46760858 1 + G A SKCM 46760858 + 46760838 46760878 41 TCAAATGGGCATCGTCTCATGGGGTGAAGGCTGTGACCGGG TCAAATGGGCATCGTCTCATAGGGTGAAGGCTGTGACCGGG Direct Loss 0.950919715645164 0 NA NA prediction 0.901839431290329 Functional Loss - F2 ENSG00000180210 CDS Human protein_coding chr11:46760858 chr11:46760858 stopgain 0.996 1 21 hm7G_associated_SNPs_3299 0 0 1 0 1 F2 chr11:46760815 3'AG 46760815 Downstream 44bp 3228 chr20 4679913 4679913 1 + G C LUSC 4679913 + 4679893 4679933 41 GGTTCTCTTTGTGGCCACATGGAGTGACCTGGGCCTCTGCA GGTTCTCTTTGTGGCCACATCGAGTGACCTGGGCCTCTGCA Direct Loss 0.950913538034295 0 NA NA prediction 0.901827076068591 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4679913 chr20:4679913 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_3300 0 0 1 0 1 PRNP chr20:4679862 3'AG 4679862 Downstream 52bp 3229 chr19 36164163 36164163 1 - C A LUAD 36164163 - 36164143 36164183 41 ATGCAGGAGGCGCACTCGAAGATGTAGACGATGAGCATGAG ATGCAGGAGGCGCACTCGAATATGTAGACGATGAGCATGAG Direct Loss 0.950907205274427 0 NA NA prediction 0.901814410548855 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36164163 chr19:36164163 synonymous SNV . 0 21 hm7G_associated_SNPs_3301 0 0 0 0 1 UPK1A chr19:36164137 5'GT 36164137 Upstream 27bp 3230 chr5 53839058 53839058 1 + G C BLCA 53839058 + 53839038 53839078 41 CGACACGTGGAGGAAGGGAAGATGGAGGTGCAGAAGGCTGA CGACACGTGGAGGAAGGGAACATGGAGGTGCAGAAGGCTGA Direct Loss 0.950889727261928 0 NA NA prediction 0.901779454523855 Functional Loss - SNX18 ENSG00000178996 CDS Human protein_coding chr5:53839058 chr5:53839058 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3302 0 0 1 0 1 SNX18 chr5:53839009 3'AG 53839009 Downstream 50bp 3231 chrX 153609143 153609143 1 + G A LUSC 153609143 + 153609123 153609163 41 ACGATCTTTTGTCTTCTTCTGAAGAGGAGTGCAAGGATAGG ACGATCTTTTGTCTTCTTCTAAAGAGGAGTGCAAGGATAGG Direct Loss 0.950888256872628 0 NA NA prediction 0.901776513745255 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153609143 chrX:153609143 nonsynonymous SNV 0.978 1 21 hm7G_associated_SNPs_3303 0 0 1 0 2 EMD chrX:153609113 3'AG 153609113 Downstream 31bp 3232 chrX 153609143 153609143 1 + G A LUSC 153609143 + 153609123 153609163 41 ACGATCTTTTGTCTTCTTCTGAAGAGGAGTGCAAGGATAGG ACGATCTTTTGTCTTCTTCTAAAGAGGAGTGCAAGGATAGG Direct Loss 0.950888256872628 0 NA NA prediction 0.901776513745255 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153609143 chrX:153609143 nonsynonymous SNV 0.978 1 21 hm7G_associated_SNPs_3303 0 0 1 0 2 EMD chrX:153609162 5'GT 153609162 Upstream 20bp 3233 chr12 2922011 2922011 1 + G C HNSC 2922011 + 2921991 2922031 41 CAATCTGCCTCGGAGACGTTGATAACGATACGGTAGGTGCA CAATCTGCCTCGGAGACGTTCATAACGATACGGTAGGTGCA Direct Loss 0.950879379749098 0 NA NA prediction 0.901758759498196 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2922011 chr12:2922011 nonsynonymous SNV 0.813 4 21 hm7G_associated_SNPs_3304 0 0 1 0 1 ITFG2 chr12:2922022 5'GT 2922022 Upstream 12bp 3234 chr2 208440037 208440037 1 + G A SKCM 208440037 + 208440017 208440057 41 CAATACAGCTGGCTAACAATGGTACCGATGGGGTACAGGGC CAATACAGCTGGCTAACAATAGTACCGATGGGGTACAGGGC Direct Loss 0.950879089078841 0 NA NA prediction 0.901758178157682 Functional Loss - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208440037 chr2:208440037 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3305 0 0 1 0 1 CREB1 chr2:208439996 3'AG 208439996 Downstream 42bp 3235 chr1 119923803 119923803 1 + G A STAD 119923803 + 119923783 119923823 41 TGAAGGTGGAGCAGATGACAGCATCACGCGGGATGACAACA TGAAGGTGGAGCAGATGACAACATCACGCGGGATGACAACA Direct Loss 0.950877197141606 0 NA NA prediction 0.901754394283211 Functional Loss - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119923803 chr1:119923803 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_3306 0 0 0 0 1 HAO2 chr1:119923839 5'GT 119923839 Upstream 37bp 3236 chr1 150256268 150256268 1 + G A SKCM 150256268 + 150256248 150256288 41 ACAGACCTACTCAATGGGCTGAAGATGGGTCGTTTTGAGAG ACAGACCTACTCAATGGGCTAAAGATGGGTCGTTTTGAGAG Direct Loss 0.950864804758414 0 NA NA prediction 0.901729609516827 Functional Loss - CIART ENSG00000159208 CDS Human protein_coding chr1:150256268 chr1:150256268 synonymous SNV . 0 21 hm7G_associated_SNPs_3308 0 0 0 0 1 CIART chr1:150256290 5'GT 150256290 Upstream 23bp 3237 chr12 81102718 81102718 1 + G A LUAD 81102718 + 81102698 81102738 41 GAACGCAAACTCCCCTGCGTGGAGGAAGTGGTGGAGAAGTA GAACGCAAACTCCCCTGCGTAGAGGAAGTGGTGGAGAAGTA Direct Loss 0.950852091949754 0 NA NA prediction 0.901704183899508 Functional Loss - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102718 chr12:81102718 synonymous SNV . 0 21 hm7G_associated_SNPs_3310 0 0 0 0 1 MYF6 chr12:81102621 3'AG 81102621 Downstream 98bp 3238 chr17 9739711 9739711 1 + G T COAD 9739711 + 9739691 9739731 41 TATTTTGTAACGGGACATTTGATCAGTACGTGTGTTGGCCT TATTTTGTAACGGGACATTTTATCAGTACGTGTGTTGGCCT Direct Loss 0.950845296541728 0 NA NA prediction 0.901690593083456 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9739711 chr17:9739711 nonsynonymous SNV 0.330 3 21 hm7G_associated_SNPs_3311 0 0 0 1 2 GLP2R chr17:9739688 3'AG 9739688 Downstream 24bp 3239 chr17 9739711 9739711 1 + G T COAD 9739711 + 9739691 9739731 41 TATTTTGTAACGGGACATTTGATCAGTACGTGTGTTGGCCT TATTTTGTAACGGGACATTTTATCAGTACGTGTGTTGGCCT Direct Loss 0.950845296541728 0 NA NA prediction 0.901690593083456 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9739711 chr17:9739711 nonsynonymous SNV 0.330 3 21 hm7G_associated_SNPs_3311 0 0 0 1 2 GLP2R chr17:9739792 5'GT 9739792 Upstream 82bp 3240 chr3 51981796 51981796 1 + G A BLCA 51981796 + 51981776 51981816 41 GCCCACCATGTCGGCTACATGTTCCTGGGTGAGGTGGCCCT GCCCACCATGTCGGCTACATATTCCTGGGTGAGGTGGCCCT Direct Loss 0.950840866770206 0 NA NA prediction 0.901681733540412 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981796 chr3:51981796 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_3312 0 0 0 0 1 PARP3 chr3:51981756 3'AG 51981756 Downstream 41bp 3241 chr10 6156054 6156054 1 + G A CESC 6156054 + 6156034 6156074 41 TGGATGAAGACTTGGAAGTTGAAACCAAGGAAGAATGTGAA TGGATGAAGACTTGGAAGTTAAAACCAAGGAAGAATGTGAA Direct Loss 0.950834379357156 0 NA NA prediction 0.901668758714313 Functional Loss - RBM17 ENSG00000134453 CDS Human protein_coding chr10:6156054 chr10:6156054 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_3313 0 0 1 0 2 RBM17 chr10:6156012 3'AG 6156012 Downstream 43bp 3242 chr10 6156054 6156054 1 + G A CESC 6156054 + 6156034 6156074 41 TGGATGAAGACTTGGAAGTTGAAACCAAGGAAGAATGTGAA TGGATGAAGACTTGGAAGTTAAAACCAAGGAAGAATGTGAA Direct Loss 0.950834379357156 0 NA NA prediction 0.901668758714313 Functional Loss - RBM17 ENSG00000134453 CDS Human protein_coding chr10:6156054 chr10:6156054 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_3313 0 0 1 0 2 RBM17 chr10:6156110 5'GT 6156110 Upstream 57bp 3243 chr22 19422339 19422339 1 + G A UCEC 19422339 + 19422319 19422359 41 GCGCTTGAAAAGGAAGATCCGAAAACTGGAAAAGGCTACTC GCGCTTGAAAAGGAAGATCCAAAAACTGGAAAAGGCTACTC Direct Loss 0.950824738365768 0 NA NA prediction 0.901649476731535 Functional Loss - MRPL40 ENSG00000185608 CDS Human protein_coding chr22:19422339 chr22:19422339 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3315 0 0 1 0 2 MRPL40 chr22:19422259 3'AG 19422259 Downstream 81bp 3244 chr22 19422339 19422339 1 + G A UCEC 19422339 + 19422319 19422359 41 GCGCTTGAAAAGGAAGATCCGAAAACTGGAAAAGGCTACTC GCGCTTGAAAAGGAAGATCCAAAAACTGGAAAAGGCTACTC Direct Loss 0.950824738365768 0 NA NA prediction 0.901649476731535 Functional Loss - MRPL40 ENSG00000185608 CDS Human protein_coding chr22:19422339 chr22:19422339 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3315 0 0 1 0 2 MRPL40 chr22:19422417 5'GT 19422417 Upstream 79bp 3245 chr1 110993901 110993901 1 + G A OV 110993901 + 110993881 110993921 41 ACTGTGTCTGACTGTGCTGTGATCACAGGGGTAAGTCGCCT ACTGTGTCTGACTGTGCTGTAATCACAGGGGTAAGTCGCCT Direct Loss 0.950812141984474 0 NA NA prediction 0.901624283968948 Functional Loss - PROK1 ENSG00000143125 CDS Human protein_coding chr1:110993901 chr1:110993901 synonymous SNV . 0 21 hm7G_associated_SNPs_3318 0 0 0 0 1 PROK1 chr1:110993910 5'GT 110993910 Upstream 10bp 3246 chr16 67262467 67262467 1 + G T SARC 67262467 + 67262447 67262487 41 TGAGCTCGATGGCACGAGCAGCGTTCTCTGAGGATGGGGCC TGAGCTCGATGGCACGAGCATCGTTCTCTGAGGATGGGGCC Direct Loss 0.950811330783567 0 NA NA prediction 0.901622661567135 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262467 chr16:67262467 nonsynonymous SNV 0.971 0 21 hm7G_associated_SNPs_3319 0 0 1 0 2 TMEM208 chr16:67262398 3'AG 67262398 Downstream 70bp 3247 chr16 67262467 67262467 1 + G T SARC 67262467 + 67262447 67262487 41 TGAGCTCGATGGCACGAGCAGCGTTCTCTGAGGATGGGGCC TGAGCTCGATGGCACGAGCATCGTTCTCTGAGGATGGGGCC Direct Loss 0.950811330783567 0 NA NA prediction 0.901622661567135 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262467 chr16:67262467 nonsynonymous SNV 0.971 0 21 hm7G_associated_SNPs_3319 0 0 1 0 2 TMEM208 chr16:67262560 5'GT 67262560 Upstream 94bp 3248 chr1 28562944 28562944 1 + G A CESC 28562944 + 28562924 28562964 41 TCGGAAAGAGAGAGCAGGCTGAAGAGGAACGATATTTCCGG TCGGAAAGAGAGAGCAGGCTAAAGAGGAACGATATTTCCGG Direct Loss 0.950799539131398 0 NA NA prediction 0.901599078262796 Functional Loss - ATPIF1 ENSG00000130770 CDS Human protein_coding chr1:28562944 chr1:28562944 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_3321 0 0 1 0 2 ATPIF1 chr1:28562872 3'AG 28562872 Downstream 73bp 3249 chr1 28562944 28562944 1 + G A CESC 28562944 + 28562924 28562964 41 TCGGAAAGAGAGAGCAGGCTGAAGAGGAACGATATTTCCGG TCGGAAAGAGAGAGCAGGCTAAAGAGGAACGATATTTCCGG Direct Loss 0.950799539131398 0 NA NA prediction 0.901599078262796 Functional Loss - ATPIF1 ENSG00000130770 CDS Human protein_coding chr1:28562944 chr1:28562944 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_3321 0 0 1 0 2 ATPIF1 chr1:28562963 5'GT 28562963 Upstream 20bp 3250 chr8 24773144 24773144 1 + G T SARC 24773144 + 24773124 24773164 41 ATCCAGCAGCTGGAAAATGAGCTTCGGGGCACAAAGTGGGA ATCCAGCAGCTGGAAAATGATCTTCGGGGCACAAAGTGGGA Direct Loss 0.950798681850005 0 NA NA prediction 0.90159736370001 Functional Loss - NEFM ENSG00000104722 CDS Human protein_coding chr8:24773144 chr8:24773144 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3322 0 0 0 0 2 NEFM chr8:24773118 3'AG 24773118 Downstream 27bp 3251 chr8 24773144 24773144 1 + G T SARC 24773144 + 24773124 24773164 41 ATCCAGCAGCTGGAAAATGAGCTTCGGGGCACAAAGTGGGA ATCCAGCAGCTGGAAAATGATCTTCGGGGCACAAAGTGGGA Direct Loss 0.950798681850005 0 NA NA prediction 0.90159736370001 Functional Loss - NEFM ENSG00000104722 CDS Human protein_coding chr8:24773144 chr8:24773144 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3322 0 0 0 0 2 NEFM chr8:24773242 5'GT 24773242 Upstream 99bp 3252 chr17 7910415 7910415 1 + G T LUSC 7910415 + 7910395 7910435 41 GTCTTTCTTGGCTTCCTCCTGGTGGTTGGGATGGGGCTGGC GTCTTTCTTGGCTTCCTCCTTGTGGTTGGGATGGGGCTGGC Direct Loss 0.950795698308341 0 NA NA prediction 0.901591396616682 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7910415 chr17:7910415 synonymous SNV . 0 21 hm7G_associated_SNPs_3324 0 0 0 0 2 GUCY2D chr17:7910378 3'AG 7910378 Downstream 38bp 3253 chr17 7910415 7910415 1 + G T LUSC 7910415 + 7910395 7910435 41 GTCTTTCTTGGCTTCCTCCTGGTGGTTGGGATGGGGCTGGC GTCTTTCTTGGCTTCCTCCTTGTGGTTGGGATGGGGCTGGC Direct Loss 0.950795698308341 0 NA NA prediction 0.901591396616682 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7910415 chr17:7910415 synonymous SNV . 0 21 hm7G_associated_SNPs_3324 0 0 0 0 2 GUCY2D chr17:7910462 5'GT 7910462 Upstream 48bp 3254 chr22 42205902 42205902 1 + G A CESC 42205902 + 42205882 42205922 41 GACAAGAAGATGTTTGAGGTGAAGCGGCGGGAGCAGCTGTT GACAAGAAGATGTTTGAGGTAAAGCGGCGGGAGCAGCTGTT Direct Loss 0.950791114039339 0 NA NA prediction 0.901582228078679 Functional Loss - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42205902 chr22:42205902 synonymous SNV . 0 21 hm7G_associated_SNPs_3325 0 0 1 0 1 CCDC134 chr22:42205883 3'AG 42205883 Downstream 20bp 3255 chr9 104309797 104309797 1 + G A BLCA 104309797 + 104309777 104309817 41 ACTACACAAAATGAAAAGCTGAAGGTAGGAACGCATCCCTG ACTACACAAAATGAAAAGCTAAAGGTAGGAACGCATCCCTG Direct Loss 0.950790285194743 0 NA NA prediction 0.901580570389485 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104309797 chr9:104309797 synonymous SNV . 0 21 hm7G_associated_SNPs_3326 0 0 1 0 1 RNF20 chr9:104309800 5'GT 104309800 Upstream 4bp 3256 chr15 66615076 66615076 1 + G C BLCA 66615076 + 66615056 66615096 41 GTCCCTGGAAGGTGAGTCCTGAAGAGGAACAAAAACGTAAA GTCCCTGGAAGGTGAGTCCTCAAGAGGAACAAAAACGTAAA Direct Loss 0.950785515220887 0 NA NA prediction 0.901571030441775 Functional Loss - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66615076 chr15:66615076 nonsynonymous SNV 0.842 0 21 hm7G_associated_SNPs_3327 0 0 0 0 1 DIS3L chr15:66615025 3'AG 66615025 Downstream 52bp 3257 chr22 18644647 18644647 1 + G A SKCM 18644647 + 18644627 18644667 41 AAGATGCAGGACAGCCGGCAGAAAGCAGTGCGGCCCCTGGA AAGATGCAGGACAGCCGGCAAAAAGCAGTGCGGCCCCTGGA Direct Loss 0.950762798570317 0 NA NA prediction 0.901525597140635 Functional Loss - USP18 ENSG00000184979 CDS Human protein_coding chr22:18644647 chr22:18644647 synonymous SNV . 0 21 hm7G_associated_SNPs_3332 0 0 1 0 2 USP18 chr22:18644557 3'AG 18644557 Downstream 91bp 3258 chr22 18644647 18644647 1 + G A SKCM 18644647 + 18644627 18644667 41 AAGATGCAGGACAGCCGGCAGAAAGCAGTGCGGCCCCTGGA AAGATGCAGGACAGCCGGCAAAAAGCAGTGCGGCCCCTGGA Direct Loss 0.950762798570317 0 NA NA prediction 0.901525597140635 Functional Loss - USP18 ENSG00000184979 CDS Human protein_coding chr22:18644647 chr22:18644647 synonymous SNV . 0 21 hm7G_associated_SNPs_3332 0 0 1 0 2 USP18 chr22:18644702 5'GT 18644702 Upstream 56bp 3259 chr1 212981080 212981080 1 + G A UCEC 212981080 + 212981060 212981100 41 ATCTTTCATTTTTGAAAGGTGCTGAGAAGGTACTGCTGCAT ATCTTTCATTTTTGAAAGGTACTGAGAAGGTACTGCTGCAT Direct Loss 0.950745458689611 0 NA NA prediction 0.901490917379222 Functional Loss - TATDN3 ENSG00000203705 CDS Human protein_coding chr1:212981080 chr1:212981080 nonsynonymous SNV 0.472 2 21 hm7G_associated_SNPs_3334 0 0 1 0 1 TATDN3 chr1:212981078 3'AG 212981078 Downstream 3bp 3260 chr14 93276689 93276689 1 + G C SKCM 93276689 + 93276669 93276709 41 CATGAAGCGGATGCCACTCTGAAGAGAGAGCAGGAGAGCTA CATGAAGCGGATGCCACTCTCAAGAGAGAGCAGGAGAGCTA Direct Loss 0.950733440721726 0 NA NA prediction 0.901466881443453 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93276689 chr14:93276689 synonymous SNV . 0 21 hm7G_associated_SNPs_3336 0 0 1 0 2 GOLGA5 chr14:93276599 3'AG 93276599 Downstream 91bp 3261 chr14 93276689 93276689 1 + G C SKCM 93276689 + 93276669 93276709 41 CATGAAGCGGATGCCACTCTGAAGAGAGAGCAGGAGAGCTA CATGAAGCGGATGCCACTCTCAAGAGAGAGCAGGAGAGCTA Direct Loss 0.950733440721726 0 NA NA prediction 0.901466881443453 Functional Loss - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93276689 chr14:93276689 synonymous SNV . 0 21 hm7G_associated_SNPs_3336 0 0 1 0 2 GOLGA5 chr14:93276722 5'GT 93276722 Upstream 34bp 3262 chr12 112589631 112589631 1 + G A UCEC 112589631 + 112589611 112589651 41 TGTCTTCTGGTTACCTGGATGATACTAAGCAGGAAACAGCT TGTCTTCTGGTTACCTGGATAATACTAAGCAGGAAACAGCT Direct Loss 0.950720245259468 0 NA NA prediction 0.901440490518935 Functional Loss - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112589631 chr12:112589631 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3339 0 0 1 0 1 TRAFD1 chr12:112589605 3'AG 112589605 Downstream 27bp 3263 chr6 44219803 44219803 1 + G A rs324134 44219803 + 44219783 44219823 41 CGGAAACGGGGCTTCGAGGTGGTATATATGACCGAGCCCAT CGGAAACGGGGCTTCGAGGTAGTATATATGACCGAGCCCAT Direct Loss 0.950717693774356 0 NA NA prediction 0.901435387548713 Functional Loss - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44219803 chr6:44219803 synonymous SNV . 0 21 hm7G_associated_SNPs_3340 0 0 1 0 1 HSP90AB1 chr6:44219736 3'AG 44219736 Downstream 68bp 3264 chrX 47101047 47101047 1 + G A UCEC 47101047 + 47101027 47101067 41 CATGAGGACCTTAATCGGGTGAAGAAGAAGGAGTATGTGGA CATGAGGACCTTAATCGGGTAAAGAAGAAGGAGTATGTGGA Direct Loss 0.950708009236308 0 NA NA prediction 0.901416018472617 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101047 chrX:47101047 synonymous SNV . 0 21 hm7G_associated_SNPs_3341 0 0 1 0 1 USP11 chrX:47101098 5'GT 47101098 Upstream 52bp 3265 chr1 27660545 27660545 1 + G A KIRC 27660545 + 27660525 27660565 41 GAGGAGTACAAGCACCGCATGGTAGGTGGGCCAGGGCGGCA GAGGAGTACAAGCACCGCATAGTAGGTGGGCCAGGGCGGCA Direct Loss 0.95070382858033 0 NA NA prediction 0.90140765716066 Functional Loss - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27660545 chr1:27660545 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3342 0 0 0 0 2 TMEM222 chr1:27660449 3'AG 27660449 Downstream 97bp 3266 chr1 27660545 27660545 1 + G A KIRC 27660545 + 27660525 27660565 41 GAGGAGTACAAGCACCGCATGGTAGGTGGGCCAGGGCGGCA GAGGAGTACAAGCACCGCATAGTAGGTGGGCCAGGGCGGCA Direct Loss 0.95070382858033 0 NA NA prediction 0.90140765716066 Functional Loss - TMEM222 ENSG00000186501 CDS Human protein_coding chr1:27660545 chr1:27660545 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3342 0 0 0 0 2 TMEM222 chr1:27660545 5'GT 27660545 Upstream 1bp 3267 chr5 139197084 139197084 1 + G A SKCM 139197084 + 139197064 139197104 41 AGCAACGAGTTTAGCAGGCTGGTGGCCGGGGAGTACCTCAG AGCAACGAGTTTAGCAGGCTAGTGGCCGGGGAGTACCTCAG Direct Loss 0.950702013943296 0 NA NA prediction 0.901404027886592 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139197084 chr5:139197084 synonymous SNV . 0 21 hm7G_associated_SNPs_3343 0 0 0 0 2 PSD2 chr5:139197066 3'AG 139197066 Downstream 19bp 3268 chr5 139197084 139197084 1 + G A SKCM 139197084 + 139197064 139197104 41 AGCAACGAGTTTAGCAGGCTGGTGGCCGGGGAGTACCTCAG AGCAACGAGTTTAGCAGGCTAGTGGCCGGGGAGTACCTCAG Direct Loss 0.950702013943296 0 NA NA prediction 0.901404027886592 Functional Loss - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139197084 chr5:139197084 synonymous SNV . 0 21 hm7G_associated_SNPs_3343 0 0 0 0 2 PSD2 chr5:139197146 5'GT 139197146 Upstream 63bp 3269 chr22 50636272 50636272 1 + G A BLCA 50636272 + 50636252 50636292 41 CAAGGATGACGTGGAACGCTGCAAGCAGAAGGACCTACTGG CAAGGATGACGTGGAACGCTACAAGCAGAAGGACCTACTGG Direct Loss 0.950694165254069 0 NA NA prediction 0.901388330508137 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50636272 chr22:50636272 nonsynonymous SNV 0.870 1 21 hm7G_associated_SNPs_3344 0 0 1 0 1 TRABD chr22:50636252 3'AG 50636252 Downstream 21bp 3270 chr12 82824729 82824729 1 + G A rs76974407 82824729 + 82824709 82824749 41 CTATTTAAAGGAAGAGAGATGGTGCTGTGGTCGTAATGCCA CTATTTAAAGGAAGAGAGATAGTGCTGTGGTCGTAATGCCA Direct Loss 0.950684205325378 0 NA NA prediction 0.901368410650757 Functional Loss - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82824729 chr12:82824729 stopgain 1.000 1 21 hm7G_associated_SNPs_3345 0 0 1 0 2 METTL25 chr12:82824672 3'AG 82824672 Downstream 58bp 3271 chr12 82824729 82824729 1 + G A rs76974407 82824729 + 82824709 82824749 41 CTATTTAAAGGAAGAGAGATGGTGCTGTGGTCGTAATGCCA CTATTTAAAGGAAGAGAGATAGTGCTGTGGTCGTAATGCCA Direct Loss 0.950684205325378 0 NA NA prediction 0.901368410650757 Functional Loss - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82824729 chr12:82824729 stopgain 1.000 1 21 hm7G_associated_SNPs_3345 0 0 1 0 2 METTL25 chr12:82824766 5'GT 82824766 Upstream 38bp 3272 chr8 39782881 39782881 1 + G A UCEC 39782881 + 39782861 39782901 41 TGCTGGGCATCCAGCAGACTGCTGGTGGAGGTGAGTGGAAA TGCTGGGCATCCAGCAGACTACTGGTGGAGGTGAGTGGAAA Direct Loss 0.950665907435802 0 NA NA prediction 0.901331814871605 Functional Loss - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39782881 chr8:39782881 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_3347 0 0 0 4 1 IDO1 chr8:39782890 5'GT 39782890 Upstream 10bp 3273 chr8 104388097 104388097 1 + G A BLCA 104388097 + 104388077 104388117 41 GGAGAAAAGGGGGAATGTCTGAGGGAAAGCTTTGAGGAGTC GGAGAAAAGGGGGAATGTCTAAGGGAAAGCTTTGAGGAGTC Direct Loss 0.95066287106637 0 NA NA prediction 0.901325742132739 Functional Loss - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104388097 chr8:104388097 synonymous SNV . 0 21 hm7G_associated_SNPs_3348 0 0 0 0 1 CTHRC1 chr8:104388187 5'GT 104388187 Upstream 91bp 3274 chr16 31500252 31500252 1 + G A LUSC 31500252 + 31500232 31500272 41 GTGGCCTGGCTTCCCGTGGTGCAGGCGGCACAGGGCGGGCA GTGGCCTGGCTTCCCGTGGTACAGGCGGCACAGGGCGGGCA Direct Loss 0.950658750706067 0 NA NA prediction 0.901317501412133 Functional Loss - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500252 chr16:31500252 synonymous SNV . 0 21 hm7G_associated_SNPs_3349 0 0 0 0 1 SLC5A2 chr16:31500201 3'AG 31500201 Downstream 52bp 3275 chr8 104388110 104388110 1 + G C BLCA 104388110 + 104388090 104388130 41 AATGTCTGAGGGAAAGCTTTGAGGAGTCCTGGACACCCAAC AATGTCTGAGGGAAAGCTTTCAGGAGTCCTGGACACCCAAC Direct Loss 0.950617756224606 0 NA NA prediction 0.901235512449213 Functional Loss - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104388110 chr8:104388110 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3351 0 0 0 0 1 CTHRC1 chr8:104388187 5'GT 104388187 Upstream 78bp 3276 chr9 32408557 32408557 1 + G A LUSC 32408557 + 32408537 32408577 41 GCTGCAATGCGTGATGCTGTGAAAAAGTTAGGAGGAGATCC GCTGCAATGCGTGATGCTGTAAAAAAGTTAGGAGGAGATCC Direct Loss 0.950615481618089 0 NA NA prediction 0.901230963236177 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32408557 chr9:32408557 synonymous SNV . 0 21 hm7G_associated_SNPs_3352 0 0 1 0 2 ACO1 chr9:32408512 3'AG 32408512 Downstream 46bp 3277 chr9 32408557 32408557 1 + G A LUSC 32408557 + 32408537 32408577 41 GCTGCAATGCGTGATGCTGTGAAAAAGTTAGGAGGAGATCC GCTGCAATGCGTGATGCTGTAAAAAAGTTAGGAGGAGATCC Direct Loss 0.950615481618089 0 NA NA prediction 0.901230963236177 Functional Loss - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32408557 chr9:32408557 synonymous SNV . 0 21 hm7G_associated_SNPs_3352 0 0 1 0 2 ACO1 chr9:32408649 5'GT 32408649 Upstream 93bp 3278 chr8 105361587 105361587 1 + G A SKCM 105361587 + 105361567 105361607 41 AGGCCCTGTGTGCTCCCGCTGAATAAGGAGGAAAGGAGGAA AGGCCCTGTGTGCTCCCGCTAAATAAGGAGGAAAGGAGGAA Direct Loss 0.950586064343548 0 NA NA prediction 0.901172128687096 Functional Loss - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361587 chr8:105361587 synonymous SNV . 0 21 hm7G_associated_SNPs_3354 0 0 0 0 1 DCSTAMP chr8:105361607 5'GT 105361607 Upstream 21bp 3279 chr6 37344705 37344705 1 + G C LUSC 37344705 + 37344685 37344725 41 GATTGTGTGTCTTGCAGGAAGAGAAGGAGAAGATGCAAGCA GATTGTGTGTCTTGCAGGAACAGAAGGAGAAGATGCAAGCA Direct Loss 0.950577433921135 0 NA NA prediction 0.90115486784227 Functional Loss - RNF8 ENSG00000112130 CDS Human protein_coding chr6:37344705 chr6:37344705 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_3356 0 0 1 0 1 RNF8 chr6:37344702 3'AG 37344702 Downstream 4bp 3280 chr7 75611590 75611590 1 + G A COAD 75611590 + 75611570 75611610 41 ACCGACATAGATGCGGCCAAGGTGTACATGGGGGAGATGGG ACCGACATAGATGCGGCCAAAGTGTACATGGGGGAGATGGG Direct Loss 0.950569209286989 0 NA NA prediction 0.901138418573979 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75611590 chr7:75611590 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_3357 0 0 1 0 2 POR chr7:75611542 3'AG 75611542 Downstream 49bp 3281 chr7 75611590 75611590 1 + G A COAD 75611590 + 75611570 75611610 41 ACCGACATAGATGCGGCCAAGGTGTACATGGGGGAGATGGG ACCGACATAGATGCGGCCAAAGTGTACATGGGGGAGATGGG Direct Loss 0.950569209286989 0 NA NA prediction 0.901138418573979 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75611590 chr7:75611590 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_3357 0 0 1 0 2 POR chr7:75611640 5'GT 75611640 Upstream 51bp 3282 chr1 170129751 170129751 1 + G T UCEC 170129751 + 170129731 170129771 41 ACCAAGAAGTACCAGCCACAGAAGAGGGTATGATGGGAAAT ACCAAGAAGTACCAGCCACATAAGAGGGTATGATGGGAAAT Direct Loss 0.95056316087858 0 NA NA prediction 0.901126321757161 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170129751 chr1:170129751 stopgain 0.998 1 21 hm7G_associated_SNPs_3359 0 0 0 0 2 METTL11B chr1:170129659 3'AG 170129659 Downstream 93bp 3283 chr1 170129751 170129751 1 + G T UCEC 170129751 + 170129731 170129771 41 ACCAAGAAGTACCAGCCACAGAAGAGGGTATGATGGGAAAT ACCAAGAAGTACCAGCCACATAAGAGGGTATGATGGGAAAT Direct Loss 0.95056316087858 0 NA NA prediction 0.901126321757161 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170129751 chr1:170129751 stopgain 0.998 1 21 hm7G_associated_SNPs_3359 0 0 0 0 2 METTL11B chr1:170129834 5'GT 170129834 Upstream 84bp 3284 chr21 43999880 43999880 1 + G A UCEC 43999880 + 43999860 43999900 41 CATACACAAGGAGCTGAGCTGCCCAGGGTCAGCTACGGGGG CATACACAAGGAGCTGAGCTACCCAGGGTCAGCTACGGGGG Direct Loss 0.950559744594854 0 NA NA prediction 0.901119489189708 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43999880 chr21:43999880 nonsynonymous SNV 0.666 1 21 hm7G_associated_SNPs_3361 0 0 0 0 2 SLC37A1 chr21:43999846 3'AG 43999846 Downstream 35bp 3285 chr21 43999880 43999880 1 + G A UCEC 43999880 + 43999860 43999900 41 CATACACAAGGAGCTGAGCTGCCCAGGGTCAGCTACGGGGG CATACACAAGGAGCTGAGCTACCCAGGGTCAGCTACGGGGG Direct Loss 0.950559744594854 0 NA NA prediction 0.901119489189708 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43999880 chr21:43999880 nonsynonymous SNV 0.666 1 21 hm7G_associated_SNPs_3361 0 0 0 0 2 SLC37A1 chr21:43999910 5'GT 43999910 Upstream 31bp 3286 chr14 24545757 24545757 1 + G A LUSC 24545757 + 24545737 24545777 41 ACTTTGACCCGGAAAATCCTGAATGTGAAGGTAAAAGGGGA ACTTTGACCCGGAAAATCCTAAATGTGAAGGTAAAAGGGGA Direct Loss 0.950558965201728 0 NA NA prediction 0.901117930403456 Functional Loss - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24545757 chr14:24545757 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3363 0 0 0 0 2 CPNE6 chr14:24545715 3'AG 24545715 Downstream 43bp 3287 chr14 24545757 24545757 1 + G A LUSC 24545757 + 24545737 24545777 41 ACTTTGACCCGGAAAATCCTGAATGTGAAGGTAAAAGGGGA ACTTTGACCCGGAAAATCCTAAATGTGAAGGTAAAAGGGGA Direct Loss 0.950558965201728 0 NA NA prediction 0.901117930403456 Functional Loss - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24545757 chr14:24545757 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3363 0 0 0 0 2 CPNE6 chr14:24545766 5'GT 24545766 Upstream 10bp 3288 chr10 99995908 99995908 1 + G T rs182012480 99995908 + 99995888 99995928 41 GAAGCAGAGCTCAAGAAACTGCAAGAAGCCAGAGGTGAGCT GAAGCAGAGCTCAAGAAACTTCAAGAAGCCAGAGGTGAGCT Direct Loss 0.950554396209403 0 NA NA prediction 0.901108792418805 Functional Loss - R3HCC1L ENSG00000166024 CDS Human protein_coding chr10:99995908 chr10:99995908 synonymous SNV . 0 21 hm7G_associated_SNPs_3367 0 0 1 0 1 R3HCC1L chr10:99995921 5'GT 99995921 Upstream 14bp 3289 chr15 77241444 77241444 1 + G T LIHC 77241444 + 77241424 77241464 41 TTGATGAAATGGATTTGAATGGTGACAAAAAGCTCTCTGAA TTGATGAAATGGATTTGAATTGTGACAAAAAGCTCTCTGAA Direct Loss 0.950537393286521 0 NA NA prediction 0.901074786573042 Functional Loss - RCN2 ENSG00000117906 CDS Human protein_coding chr15:77241444 chr15:77241444 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_3369 0 0 1 0 1 RCN2 chr15:77241411 3'AG 77241411 Downstream 34bp 3290 chr19 59061149 59061149 1 + G T LGG 59061149 + 59061129 59061169 41 CATGTGCTCCCTGACCTGAAGGAGGAGGATGGCAGCCTCAG CATGTGCTCCCTGACCTGAATGAGGAGGATGGCAGCCTCAG Direct Loss 0.950537216346611 0 NA NA prediction 0.901074432693223 Functional Loss - TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59061149 chr19:59061149 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3370 0 0 1 0 2 TRIM28 chr19:59061104 3'AG 59061104 Downstream 46bp 3291 chr19 59061149 59061149 1 + G T LGG 59061149 + 59061129 59061169 41 CATGTGCTCCCTGACCTGAAGGAGGAGGATGGCAGCCTCAG CATGTGCTCCCTGACCTGAATGAGGAGGATGGCAGCCTCAG Direct Loss 0.950537216346611 0 NA NA prediction 0.901074432693223 Functional Loss - TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59061149 chr19:59061149 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3370 0 0 1 0 2 TRIM28 chr19:59061227 5'GT 59061227 Upstream 79bp 3292 chr1 28863401 28863401 1 + G A BLCA 28863401 + 28863381 28863421 41 GCCTCTGTGGGGTATGCTGTGACCAAGGATGGTGAGTGGGG GCCTCTGTGGGGTATGCTGTAACCAAGGATGGTGAGTGGGG Direct Loss 0.950535014811284 0 NA NA prediction 0.901070029622568 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28863401 chr1:28863401 synonymous SNV . 0 21 hm7G_associated_SNPs_3372 0 0 1 0 1 RCC1 chr1:28863411 5'GT 28863411 Upstream 11bp 3293 chrY 22930714 22930714 1 + G A HNSC 22930714 + 22930694 22930734 41 AAGTTGTGCAAAGTGAGGAAGATTACTGTGGGGACAAAGGG AAGTTGTGCAAAGTGAGGAAAATTACTGTGGGGACAAAGGG Direct Loss 0.950511904810185 0 NA NA prediction 0.90102380962037 Functional Loss - RPS4Y2 ENSG00000157828 CDS Human other chrY:22930714 chrY:22930714 synonymous SNV . 0 21 hm7G_associated_SNPs_3375 0 0 0 0 1 RPS4Y2 chrY:22930691 3'AG 22930691 Downstream 24bp 3294 chr4 122735115 122735115 1 + G A UCEC 122735115 + 122735095 122735135 41 TTGAAGACTCTGAGAAGGAAGATGATGAAGGCGGTGGTGAT TTGAAGACTCTGAGAAGGAAAATGATGAAGGCGGTGGTGAT Direct Loss 0.950495624190437 0 NA NA prediction 0.900991248380873 Functional Loss - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122735115 chr4:122735115 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_3378 0 0 1 2 2 EXOSC9 chr4:122735021 3'AG 122735021 Downstream 95bp 3295 chr4 122735115 122735115 1 + G A UCEC 122735115 + 122735095 122735135 41 TTGAAGACTCTGAGAAGGAAGATGATGAAGGCGGTGGTGAT TTGAAGACTCTGAGAAGGAAAATGATGAAGGCGGTGGTGAT Direct Loss 0.950495624190437 0 NA NA prediction 0.900991248380873 Functional Loss - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122735115 chr4:122735115 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_3378 0 0 1 2 2 EXOSC9 chr4:122735202 5'GT 122735202 Upstream 88bp 3296 chr2 71304738 71304738 1 + G A rs1043701 71304738 + 71304718 71304758 41 ATCCTGTGCGTGGGCTCTGTGTGGAAGAGCTGGGAGCTGCT ATCCTGTGCGTGGGCTCTGTATGGAAGAGCTGGGAGCTGCT Direct Loss 0.950492704936889 0 NA NA prediction 0.900985409873778 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71304738 chr2:71304738 synonymous SNV . 0 21 hm7G_associated_SNPs_3380 0 0 1 0 2 NAGK chr2:71304688 3'AG 71304688 Downstream 51bp 3297 chr2 71304738 71304738 1 + G A rs1043701 71304738 + 71304718 71304758 41 ATCCTGTGCGTGGGCTCTGTGTGGAAGAGCTGGGAGCTGCT ATCCTGTGCGTGGGCTCTGTATGGAAGAGCTGGGAGCTGCT Direct Loss 0.950492704936889 0 NA NA prediction 0.900985409873778 Functional Loss - NAGK ENSG00000124357 CDS Human protein_coding chr2:71304738 chr2:71304738 synonymous SNV . 0 21 hm7G_associated_SNPs_3380 0 0 1 0 2 NAGK chr2:71304766 5'GT 71304766 Upstream 29bp 3298 chr1 10460560 10460560 1 + G A LUSC 10460560 + 10460540 10460580 41 AAAGAGATGGTCTCCAAGCTGAAGAAGCCCCGGCGGATCAT AAAGAGATGGTCTCCAAGCTAAAGAAGCCCCGGCGGATCAT Direct Loss 0.950482671013077 0 NA NA prediction 0.900965342026155 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10460560 chr1:10460560 synonymous SNV . 0 21 hm7G_associated_SNPs_3381 0 0 1 0 1 PGD chr1:10460629 5'GT 10460629 Upstream 70bp 3299 chr8 118543004 118543004 1 + G A STAD 118543004 + 118542984 118543024 41 AAGATGGCTCAAAGAATGATGATCGGGCTGGCCCACCTCGT AAGATGGCTCAAAGAATGATAATCGGGCTGGCCCACCTCGT Direct Loss 0.950479534433968 0 NA NA prediction 0.900959068867936 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118543004 chr8:118543004 nonsynonymous SNV 0.872 0 21 hm7G_associated_SNPs_3383 0 0 1 0 2 MED30 chr8:118542962 3'AG 118542962 Downstream 43bp 3300 chr8 118543004 118543004 1 + G A STAD 118543004 + 118542984 118543024 41 AAGATGGCTCAAAGAATGATGATCGGGCTGGCCCACCTCGT AAGATGGCTCAAAGAATGATAATCGGGCTGGCCCACCTCGT Direct Loss 0.950479534433968 0 NA NA prediction 0.900959068867936 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118543004 chr8:118543004 nonsynonymous SNV 0.872 0 21 hm7G_associated_SNPs_3383 0 0 1 0 2 MED30 chr8:118543066 5'GT 118543066 Upstream 63bp 3301 chr7 150711000 150711000 1 + G T SARC 150711000 + 150710980 150711020 41 GCCGGCGACGTCATCGGCGTGCTGCGGGTGCGGAGGGGCGG GCCGGCGACGTCATCGGCGTTCTGCGGGTGCGGAGGGGCGG Direct Loss 0.950473275514863 0 NA NA prediction 0.900946551029727 Functional Loss - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150711000 chr7:150711000 synonymous SNV . 0 21 hm7G_associated_SNPs_3384 0 0 0 0 1 NOS3 chr7:150711006 5'GT 150711006 Upstream 7bp 3302 chr5 76259180 76259180 1 + G T CESC 76259180 + 76259160 76259200 41 TCCCTTAGAAATCCTCAGCAGGTTGCGAGGGAATAGGAGAC TCCCTTAGAAATCCTCAGCATGTTGCGAGGGAATAGGAGAC Direct Loss 0.950469112849158 0 NA NA prediction 0.900938225698317 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76259180 chr5:76259180 nonsynonymous SNV 0.339 4 21 hm7G_associated_SNPs_3385 0 0 0 0 1 CRHBP chr5:76259168 3'AG 76259168 Downstream 13bp 3303 chr12 53433969 53433969 1 + G A HNSC 53433969 + 53433949 53433989 41 ATGCTGCTCTCTCTGTTGATGGTGAAGATGAAAATGAGGGA ATGCTGCTCTCTCTGTTGATAGTGAAGATGAAAATGAGGGA Direct Loss 0.950467334332906 0 NA NA prediction 0.900934668665812 Functional Loss - EIF4B ENSG00000063046 CDS Human protein_coding chr12:53433969 chr12:53433969 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3386 0 0 0 0 1 EIF4B chr12:53433927 3'AG 53433927 Downstream 43bp 3304 chr19 45296769 45296769 1 + G A BLCA 45296769 + 45296749 45296789 41 TGCCCCTTCTGCCGCTGCGAGATCAAGGGCTGGGAGGCCGT TGCCCCTTCTGCCGCTGCGAAATCAAGGGCTGGGAGGCCGT Direct Loss 0.950429100739126 0 NA NA prediction 0.900858201478252 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45296769 chr19:45296769 synonymous SNV . 0 21 hm7G_associated_SNPs_3389 0 0 0 0 1 CBLC chr19:45296731 3'AG 45296731 Downstream 39bp 3305 chr1 151742718 151742718 1 + G A UCEC 151742718 + 151742698 151742738 41 TGTTTGTGAACTTCCAGAATGATCGGAACGACAGAGGTGGG TGTTTGTGAACTTCCAGAATAATCGGAACGACAGAGGTGGG Direct Loss 0.950422841658041 0 NA NA prediction 0.900845683316082 Functional Loss - OAZ3 ENSG00000143450 CDS Human protein_coding chr1:151742718 chr1:151742718 nonsynonymous SNV 0.709 0 21 hm7G_associated_SNPs_3390 0 0 0 0 2 OAZ3 chr1:151742648 3'AG 151742648 Downstream 71bp 3306 chr1 151742718 151742718 1 + G A UCEC 151742718 + 151742698 151742738 41 TGTTTGTGAACTTCCAGAATGATCGGAACGACAGAGGTGGG TGTTTGTGAACTTCCAGAATAATCGGAACGACAGAGGTGGG Direct Loss 0.950422841658041 0 NA NA prediction 0.900845683316082 Functional Loss - OAZ3 ENSG00000143450 CDS Human protein_coding chr1:151742718 chr1:151742718 nonsynonymous SNV 0.709 0 21 hm7G_associated_SNPs_3390 0 0 0 0 2 OAZ3 chr1:151742733 5'GT 151742733 Upstream 16bp 3307 chr18 12955549 12955549 1 + G A UCEC 12955549 + 12955529 12955569 41 GTTCTTTTGACCGAACAGCTGCTGTATGGGAAGAAATAGTA GTTCTTTTGACCGAACAGCTACTGTATGGGAAGAAATAGTA Direct Loss 0.95040141907908 0 NA NA prediction 0.900802838158159 Functional Loss - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12955549 chr18:12955549 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_3392 0 0 1 0 2 SEH1L chr18:12955462 3'AG 12955462 Downstream 88bp 3308 chr18 12955549 12955549 1 + G A UCEC 12955549 + 12955529 12955569 41 GTTCTTTTGACCGAACAGCTGCTGTATGGGAAGAAATAGTA GTTCTTTTGACCGAACAGCTACTGTATGGGAAGAAATAGTA Direct Loss 0.95040141907908 0 NA NA prediction 0.900802838158159 Functional Loss - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12955549 chr18:12955549 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_3392 0 0 1 0 2 SEH1L chr18:12955608 5'GT 12955608 Upstream 60bp 3309 chr1 53073967 53073967 1 + G T BRCA 53073967 + 53073947 53073987 41 GGAGCCCACCTGGAACTTCTGGAAGTACCTAGTAGCCCCAG GGAGCCCACCTGGAACTTCTTGAAGTACCTAGTAGCCCCAG Direct Loss 0.950394025298457 0 NA NA prediction 0.900788050596914 Functional Loss - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53073967 chr1:53073967 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3394 0 0 0 0 1 GPX7 chr1:53073934 3'AG 53073934 Downstream 34bp 3310 chr12 100795563 100795563 1 + G A rs572054805 100795563 + 100795543 100795583 41 TTCTTGTTCCAGGTTCCTATGCAGGGGCAGTGGTTGCCATG TTCTTGTTCCAGGTTCCTATACAGGGGCAGTGGTTGCCATG Direct Loss 0.950390658757146 0 NA NA prediction 0.900781317514292 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100795563 chr12:100795563 nonsynonymous SNV 0.890 4 21 hm7G_associated_SNPs_3395 0 0 0 0 2 SLC17A8 chr12:100795555 3'AG 100795555 Downstream 9bp 3311 chr12 100795563 100795563 1 + G A rs572054805 100795563 + 100795543 100795583 41 TTCTTGTTCCAGGTTCCTATGCAGGGGCAGTGGTTGCCATG TTCTTGTTCCAGGTTCCTATACAGGGGCAGTGGTTGCCATG Direct Loss 0.950390658757146 0 NA NA prediction 0.900781317514292 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100795563 chr12:100795563 nonsynonymous SNV 0.890 4 21 hm7G_associated_SNPs_3395 0 0 0 0 2 SLC17A8 chr12:100795641 5'GT 100795641 Upstream 79bp 3312 chr19 39973556 39973556 1 + G A BRCA 39973556 + 39973536 39973576 41 GTGGACGAAAATGGTGCCAAGGTGAGGGGGAAAGAGACCGA GTGGACGAAAATGGTGCCAAAGTGAGGGGGAAAGAGACCGA Direct Loss 0.950382878683161 0 NA NA prediction 0.900765757366323 Functional Loss - TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39973556 chr19:39973556 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_3396 0 0 1 2 2 TIMM50 chr19:39973525 3'AG 39973525 Downstream 32bp 3313 chr19 39973556 39973556 1 + G A BRCA 39973556 + 39973536 39973576 41 GTGGACGAAAATGGTGCCAAGGTGAGGGGGAAAGAGACCGA GTGGACGAAAATGGTGCCAAAGTGAGGGGGAAAGAGACCGA Direct Loss 0.950382878683161 0 NA NA prediction 0.900765757366323 Functional Loss - TIMM50 ENSG00000105197 CDS Human protein_coding chr19:39973556 chr19:39973556 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_3396 0 0 1 2 2 TIMM50 chr19:39973556 5'GT 39973556 Upstream 1bp 3314 chrX 153996657 153996657 1 + G A LAML 153996657 + 153996637 153996677 41 GTTTGTTATTGGGAGTTGGTGGTCAGATGCAGGAGCTTCGG GTTTGTTATTGGGAGTTGGTAGTCAGATGCAGGAGCTTCGG Direct Loss 0.950371062161929 0 NA NA prediction 0.900742124323859 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:153996657 chrX:153996657 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_3397 0 0 1 0 2 DKC1 chrX:153996577 3'AG 153996577 Downstream 81bp 3315 chrX 153996657 153996657 1 + G A LAML 153996657 + 153996637 153996677 41 GTTTGTTATTGGGAGTTGGTGGTCAGATGCAGGAGCTTCGG GTTTGTTATTGGGAGTTGGTAGTCAGATGCAGGAGCTTCGG Direct Loss 0.950371062161929 0 NA NA prediction 0.900742124323859 Functional Loss - DKC1 ENSG00000130826 CDS Human protein_coding chrX:153996657 chrX:153996657 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_3397 0 0 1 0 2 DKC1 chrX:153996707 5'GT 153996707 Upstream 51bp 3316 chr1 228879035 228879035 1 + G A SKCM 228879035 + 228879015 228879055 41 ACTTTGCTTGGTTGCAGGATGAATTTGACAAGCTGAGGCCT ACTTTGCTTGGTTGCAGGATAAATTTGACAAGCTGAGGCCT Direct Loss 0.950353051046492 0 NA NA prediction 0.900706102092985 Functional Loss - RHOU ENSG00000116574 CDS Human protein_coding chr1:228879035 chr1:228879035 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_3399 0 0 0 0 1 RHOU chr1:228879032 3'AG 228879032 Downstream 4bp 3317 chr6 74072885 74072885 1 + G T LIHC 74072885 + 74072865 74072905 41 TTGATTCACGTGAATCGATTGGACCCTAACGGCGAGGCTGA TTGATTCACGTGAATCGATTTGACCCTAACGGCGAGGCTGA Direct Loss 0.950342733334783 0 NA NA prediction 0.900685466669566 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072885 chr6:74072885 nonsynonymous SNV 0.015 0 21 hm7G_associated_SNPs_3400 0 0 0 0 1 KHDC3L chr6:74072818 3'AG 74072818 Downstream 68bp 3318 chr7 28220125 28220125 1 + G A SKCM 28220125 + 28220105 28220145 41 TCGATGAGGTCGGCCAGGGTGGGGAAGTGGAGTCCGCAGCC TCGATGAGGTCGGCCAGGGTAGGGAAGTGGAGTCCGCAGCC Direct Loss 0.950331027154117 0 NA NA prediction 0.900662054308234 Functional Loss - JAZF1 ENSG00000153814 CDS Human protein_coding chr7:28220125 chr7:28220125 synonymous SNV . 0 21 hm7G_associated_SNPs_3401 0 0 0 0 1 JAZF1 chr7:28220158 5'GT 28220158 Upstream 34bp 3319 chr7 48080963 48080963 1 + G A HNSC 48080963 + 48080943 48080983 41 ACGTCCCAGTGAAGCGCTCTGAGAAGGCCGTGGATGCCCCA ACGTCCCAGTGAAGCGCTCTAAGAAGGCCGTGGATGCCCCA Direct Loss 0.95032202211268 0 NA NA prediction 0.90064404422536 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48080963 chr7:48080963 nonsynonymous SNV 0.719 2 21 hm7G_associated_SNPs_3403 0 0 0 0 1 C7orf57 chr7:48080931 3'AG 48080931 Downstream 33bp 3320 chr2 181846866 181846866 1 + G A BLCA 181846866 + 181846846 181846886 41 ACCCAGCCGCTCCAGAGCCTGAAGAACAAGAGGAAAGAAAA ACCCAGCCGCTCCAGAGCCTAAAGAACAAGAGGAAAGAAAA Direct Loss 0.950308534014845 0 NA NA prediction 0.900617068029691 Functional Loss - UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181846866 chr2:181846866 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_3404 0 0 0 0 1 UBE2E3 chr2:181846963 5'GT 181846963 Upstream 98bp 3321 chr20 13782296 13782296 1 + G T SARC 13782296 + 13782276 13782316 41 GTCAATGACCTGGGACATCTGCTTGGGAGAGCTGGCTTTAA GTCAATGACCTGGGACATCTTCTTGGGAGAGCTGGCTTTAA Direct Loss 0.950288716724342 0 NA NA prediction 0.900577433448684 Functional Loss - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13782296 chr20:13782296 synonymous SNV . 0 21 hm7G_associated_SNPs_3406 0 0 1 1 1 NDUFAF5 chr20:13782329 5'GT 13782329 Upstream 34bp 3322 chr17 27066202 27066202 1 + G A SKCM 27066202 + 27066182 27066222 41 TGAGCGAGAACTATTTGCCTGGGGCCGTGGAGACAGCGGTA TGAGCGAGAACTATTTGCCTAGGGCCGTGGAGACAGCGGTA Direct Loss 0.950273930872021 0 NA NA prediction 0.900547861744041 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27066202 chr17:27066202 stopgain 0.998 1 21 hm7G_associated_SNPs_3407 0 0 1 0 1 NEK8 chr17:27066219 5'GT 27066219 Upstream 18bp 3323 chr3 10861408 10861408 1 + G A UCEC 10861408 + 10861388 10861428 41 TCCTTTCAGGCATTGGCTATGCAACACAGGTGATTGAGGCC TCCTTTCAGGCATTGGCTATACAACACAGGTGATTGAGGCC Direct Loss 0.950268065129464 0 NA NA prediction 0.900536130258929 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10861408 chr3:10861408 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_3408 0 0 0 0 1 SLC6A11 chr3:10861397 3'AG 10861397 Downstream 12bp 3324 chr17 35299535 35299535 1 + G A BLCA 35299535 + 35299515 35299555 41 CGCTCCAAGGAGCGGAGGATGAAGCAGCTGAGCGCCCTGGG CGCTCCAAGGAGCGGAGGATAAAGCAGCTGAGCGCCCTGGG Direct Loss 0.950261357851651 0 NA NA prediction 0.900522715703302 Functional Loss - LHX1 ENSG00000132130 CDS Human other chr17:35299535 chr17:35299535 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3409 0 0 0 0 1 LHX1 chr17:35299497 3'AG 35299497 Downstream 39bp 3325 chr11 66372840 66372840 1 + G C LUSC 66372840 + 66372820 66372860 41 ACCTGGGCAATGTCCGTGCTGATGCTGACGGCCGCGCCATC ACCTGGGCAATGTCCGTGCTCATGCTGACGGCCGCGCCATC Direct Loss 0.950249683391749 0 NA NA prediction 0.900499366783498 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66372840 chr11:66372840 nonsynonymous SNV 0.432 3 21 hm7G_associated_SNPs_3410 0 0 1 0 2 CCS chr11:66372810 3'AG 66372810 Downstream 31bp 3326 chr11 66372840 66372840 1 + G C LUSC 66372840 + 66372820 66372860 41 ACCTGGGCAATGTCCGTGCTGATGCTGACGGCCGCGCCATC ACCTGGGCAATGTCCGTGCTCATGCTGACGGCCGCGCCATC Direct Loss 0.950249683391749 0 NA NA prediction 0.900499366783498 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66372840 chr11:66372840 nonsynonymous SNV 0.432 3 21 hm7G_associated_SNPs_3410 0 0 1 0 2 CCS chr11:66372887 5'GT 66372887 Upstream 48bp 3327 chr11 60234505 60234505 1 + G A HNSC 60234505 + 60234485 60234525 41 TGGCATCGTTGAGAATGAATGGAAAAGAACGTGCTCCAGAC TGGCATCGTTGAGAATGAATAGAAAAGAACGTGCTCCAGAC Direct Loss 0.950240389013744 0 NA NA prediction 0.900480778027489 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60234505 chr11:60234505 stopgain 0.962 0 21 hm7G_associated_SNPs_3411 0 0 0 0 3 MS4A1 chr11:60234432 3'AG 60234432 Downstream 74bp 3328 chr11 60234505 60234505 1 + G A HNSC 60234505 + 60234485 60234525 41 TGGCATCGTTGAGAATGAATGGAAAAGAACGTGCTCCAGAC TGGCATCGTTGAGAATGAATAGAAAAGAACGTGCTCCAGAC Direct Loss 0.950240389013744 0 NA NA prediction 0.900480778027489 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60234505 chr11:60234505 stopgain 0.962 0 21 hm7G_associated_SNPs_3411 0 0 0 0 3 MS4A1 chr11:60234471 3'AG 60234471 Downstream 35bp 3329 chr11 60234505 60234505 1 + G A HNSC 60234505 + 60234485 60234525 41 TGGCATCGTTGAGAATGAATGGAAAAGAACGTGCTCCAGAC TGGCATCGTTGAGAATGAATAGAAAAGAACGTGCTCCAGAC Direct Loss 0.950240389013744 0 NA NA prediction 0.900480778027489 Functional Loss - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60234505 chr11:60234505 stopgain 0.962 0 21 hm7G_associated_SNPs_3411 0 0 0 0 3 MS4A1 chr11:60234533 5'GT 60234533 Upstream 29bp 3330 chr6 42995121 42995121 1 + G T UCEC 42995121 + 42995101 42995141 41 CAGCAAGAAATGGCACAGCAGGAACGAAAGCAACAGCAGGA CAGCAAGAAATGGCACAGCATGAACGAAAGCAACAGCAGGA Direct Loss 0.950234069760649 0 NA NA prediction 0.900468139521298 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42995121 chr6:42995121 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_3412 0 0 1 0 2 RRP36 chr6:42995098 3'AG 42995098 Downstream 24bp 3331 chr6 42995121 42995121 1 + G T UCEC 42995121 + 42995101 42995141 41 CAGCAAGAAATGGCACAGCAGGAACGAAAGCAACAGCAGGA CAGCAAGAAATGGCACAGCATGAACGAAAGCAACAGCAGGA Direct Loss 0.950234069760649 0 NA NA prediction 0.900468139521298 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42995121 chr6:42995121 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_3412 0 0 1 0 2 RRP36 chr6:42995215 5'GT 42995215 Upstream 95bp 3332 chr14 89038457 89038457 1 + G T LUAD 89038457 + 89038437 89038477 41 GCAATTTCAGTCGGGGAGATGAGAGGAGGCATGAAGCTGCA GCAATTTCAGTCGGGGAGATTAGAGGAGGCATGAAGCTGCA Direct Loss 0.950231355357582 0 NA NA prediction 0.900462710715164 Functional Loss - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89038457 chr14:89038457 stopgain 1.000 1 21 hm7G_associated_SNPs_3413 0 0 1 0 1 ZC3H14 chr14:89038374 3'AG 89038374 Downstream 84bp 3333 chr9 131046878 131046878 1 + G A UCEC 131046878 + 131046858 131046898 41 CTGAAGGAGAAGAGGGACATGCTGGACAAGGAGATCTCCCA CTGAAGGAGAAGAGGGACATACTGGACAAGGAGATCTCCCA Direct Loss 0.95022911048275 0 NA NA prediction 0.900458220965501 Functional Loss - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131046878 chr9:131046878 nonsynonymous SNV 0.971 0 21 hm7G_associated_SNPs_3414 0 0 1 0 2 SWI5 chr9:131046789 3'AG 131046789 Downstream 90bp 3334 chr9 131046878 131046878 1 + G A UCEC 131046878 + 131046858 131046898 41 CTGAAGGAGAAGAGGGACATGCTGGACAAGGAGATCTCCCA CTGAAGGAGAAGAGGGACATACTGGACAAGGAGATCTCCCA Direct Loss 0.95022911048275 0 NA NA prediction 0.900458220965501 Functional Loss - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131046878 chr9:131046878 nonsynonymous SNV 0.971 0 21 hm7G_associated_SNPs_3414 0 0 1 0 2 SWI5 chr9:131046910 5'GT 131046910 Upstream 33bp 3335 chr4 184431485 184431485 1 + G A BLCA 184431485 + 184431465 184431505 41 AAAAATATAAGAAAGAAGATGATTTAAACCAGAAGAAACGT AAAAATATAAGAAAGAAGATAATTTAAACCAGAAGAAACGT Direct Loss 0.950205110520171 0 NA NA prediction 0.900410221040343 Functional Loss - ING2 ENSG00000168556 CDS Human protein_coding chr4:184431485 chr4:184431485 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3416 0 0 1 0 1 ING2 chr4:184431435 3'AG 184431435 Downstream 51bp 3336 chr11 47259728 47259728 1 + G A rs143049891 47259728 + 47259708 47259748 41 TGGGGGACACGCTGGCCTCTGCAATGGGTGAGTAGGAGGAG TGGGGGACACGCTGGCCTCTACAATGGGTGAGTAGGAGGAG Direct Loss 0.950188329026751 0 NA NA prediction 0.900376658053502 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259728 chr11:47259728 nonsynonymous SNV 0.990 0 21 hm7G_associated_SNPs_3417 1 0 1 0 2 DDB2 chr11:47259689 3'AG 47259689 Downstream 40bp 3337 chr11 47259728 47259728 1 + G A rs143049891 47259728 + 47259708 47259748 41 TGGGGGACACGCTGGCCTCTGCAATGGGTGAGTAGGAGGAG TGGGGGACACGCTGGCCTCTACAATGGGTGAGTAGGAGGAG Direct Loss 0.950188329026751 0 NA NA prediction 0.900376658053502 Functional Loss - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47259728 chr11:47259728 nonsynonymous SNV 0.990 0 21 hm7G_associated_SNPs_3417 1 0 1 0 2 DDB2 chr11:47259734 5'GT 47259734 Upstream 7bp 3338 chr2 73476281 73476281 1 + G C BLCA 73476281 + 73476261 73476301 41 TCTGTGCTGGCCGAGTACCTGAGGAGGATCTGAAGAGGACA TCTGTGCTGGCCGAGTACCTCAGGAGGATCTGAAGAGGACA Direct Loss 0.950172856922577 0 NA NA prediction 0.900345713845153 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73476281 chr2:73476281 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3418 0 0 1 0 1 CCT7 chr2:73476307 5'GT 73476307 Upstream 27bp 3339 chr22 41916229 41916229 1 + G A BLCA 41916229 + 41916209 41916249 41 ACCTGGCTCACCCTGTGGCAGAAGTGGGCAAGGTGGCAGAG ACCTGGCTCACCCTGTGGCAAAAGTGGGCAAGGTGGCAGAG Direct Loss 0.950150493235186 0 NA NA prediction 0.900300986470371 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41916229 chr22:41916229 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_3419 0 0 0 0 2 ACO2 chr22:41916175 3'AG 41916175 Downstream 55bp 3340 chr22 41916229 41916229 1 + G A BLCA 41916229 + 41916209 41916249 41 ACCTGGCTCACCCTGTGGCAGAAGTGGGCAAGGTGGCAGAG ACCTGGCTCACCCTGTGGCAAAAGTGGGCAAGGTGGCAGAG Direct Loss 0.950150493235186 0 NA NA prediction 0.900300986470371 Functional Loss - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41916229 chr22:41916229 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_3419 0 0 0 0 2 ACO2 chr22:41916280 5'GT 41916280 Upstream 52bp 3341 chr18 23772330 23772330 1 + G T UCEC 23772330 + 23772310 23772350 41 TATGTAACTGAAATAGAAAAGGAAAAGGAAGAAGCAGAGAA TATGTAACTGAAATAGAAAATGAAAAGGAAGAAGCAGAGAA Direct Loss 0.950141562454656 0 NA NA prediction 0.900283124909312 Functional Loss - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23772330 chr18:23772330 nonsynonymous SNV 0.982 1 21 hm7G_associated_SNPs_3420 0 0 0 0 1 PSMA8 chr18:23772283 3'AG 23772283 Downstream 48bp 3342 chr15 48634228 48634228 1 + G A BLCA 48634228 + 48634208 48634248 41 CTATCTTTCAGGCCTTGGATGACACCGAAAGGGGTTCAGGA CTATCTTTCAGGCCTTGGATAACACCGAAAGGGGTTCAGGA Direct Loss 0.950138914088174 0 NA NA prediction 0.900277828176349 Functional Loss - DUT ENSG00000128951 CDS Human protein_coding chr15:48634228 chr15:48634228 nonsynonymous SNV 0.939 0 21 hm7G_associated_SNPs_3421 0 0 1 0 1 DUT chr15:48634219 3'AG 48634219 Downstream 10bp 3343 chr7 75933361 75933361 1 + G A CESC 75933361 + 75933341 75933381 41 CTGTCCCCTGAGGGCACACTGACCGTGGAGGCCCCCATGCC CTGTCCCCTGAGGGCACACTAACCGTGGAGGCCCCCATGCC Direct Loss 0.95013421997301 0 NA NA prediction 0.900268439946019 Functional Loss - HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933361 chr7:75933361 synonymous SNV . 0 21 hm7G_associated_SNPs_3422 0 0 1 0 1 HSPB1 chr7:75933301 3'AG 75933301 Downstream 61bp 3344 chr17 4717793 4717793 1 + G T OV 4717793 + 4717773 4717813 41 GGAGATTTTCATCACAGACTGGTGGTGAGTGGGAAAAGGCC GGAGATTTTCATCACAGACTTGTGGTGAGTGGGAAAAGGCC Direct Loss 0.950134045576989 0 NA NA prediction 0.900268091153978 Functional Loss - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4717793 chr17:4717793 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3423 0 0 1 0 2 PLD2 chr17:4717713 3'AG 4717713 Downstream 81bp 3345 chr17 4717793 4717793 1 + G T OV 4717793 + 4717773 4717813 41 GGAGATTTTCATCACAGACTGGTGGTGAGTGGGAAAAGGCC GGAGATTTTCATCACAGACTTGTGGTGAGTGGGAAAAGGCC Direct Loss 0.950134045576989 0 NA NA prediction 0.900268091153978 Functional Loss - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4717793 chr17:4717793 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3423 0 0 1 0 2 PLD2 chr17:4717796 5'GT 4717796 Upstream 4bp 3346 chr19 12918291 12918291 1 + G A UCEC 12918291 + 12918271 12918311 41 CCACTGGGCTTATACAGTATGCATTGGACCAGGGCGTGAAC CCACTGGGCTTATACAGTATACATTGGACCAGGGCGTGAAC Direct Loss 0.950133667699898 0 NA NA prediction 0.900267335399795 Functional Loss - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12918291 chr19:12918291 nonsynonymous SNV 0.613 2 21 hm7G_associated_SNPs_3424 0 0 1 0 1 RNASEH2A chr19:12918320 5'GT 12918320 Upstream 30bp 3347 chr9 100773575 100773575 1 + G A rs61757703 100773575 + 100773555 100773595 41 GGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGA GGAGAAGATGAGGAAGACGAAGACGATGAGGATGGTGAAGA Direct Loss 0.95013342707616 0 NA NA prediction 0.900266854152319 Functional Loss - ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773575 chr9:100773575 synonymous SNV . 0 21 hm7G_associated_SNPs_3425 0 0 1 0 2 ANP32B chr9:100773553 3'AG 100773553 Downstream 23bp 3348 chr9 100773575 100773575 1 + G A rs61757703 100773575 + 100773555 100773595 41 GGAGAAGATGAGGAAGACGAGGACGATGAGGATGGTGAAGA GGAGAAGATGAGGAAGACGAAGACGATGAGGATGGTGAAGA Direct Loss 0.95013342707616 0 NA NA prediction 0.900266854152319 Functional Loss - ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773575 chr9:100773575 synonymous SNV . 0 21 hm7G_associated_SNPs_3425 0 0 1 0 2 ANP32B chr9:100773671 5'GT 100773671 Upstream 97bp 3349 chr12 104332181 104332181 1 + G T BLCA 104332181 + 104332161 104332201 41 AAGAAGAGAAAGAAGAATCTGATGATGAAGCTGCAGTAGAG AAGAAGAGAAAGAAGAATCTTATGATGAAGCTGCAGTAGAG Direct Loss 0.950127024462206 0 NA NA prediction 0.900254048924412 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332181 chr12:104332181 nonsynonymous SNV 0.988 3 21 hm7G_associated_SNPs_3426 0 0 1 0 4 HSP90B1 chr12:104332118 3'AG 104332118 Downstream 64bp 3350 chr12 104332181 104332181 1 + G T BLCA 104332181 + 104332161 104332201 41 AAGAAGAGAAAGAAGAATCTGATGATGAAGCTGCAGTAGAG AAGAAGAGAAAGAAGAATCTTATGATGAAGCTGCAGTAGAG Direct Loss 0.950127024462206 0 NA NA prediction 0.900254048924412 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332181 chr12:104332181 nonsynonymous SNV 0.988 3 21 hm7G_associated_SNPs_3426 0 0 1 0 4 HSP90B1 chr12:104332155 3'AG 104332155 Downstream 27bp 3351 chr12 104332181 104332181 1 + G T BLCA 104332181 + 104332161 104332201 41 AAGAAGAGAAAGAAGAATCTGATGATGAAGCTGCAGTAGAG AAGAAGAGAAAGAAGAATCTTATGATGAAGCTGCAGTAGAG Direct Loss 0.950127024462206 0 NA NA prediction 0.900254048924412 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332181 chr12:104332181 nonsynonymous SNV 0.988 3 21 hm7G_associated_SNPs_3426 0 0 1 0 4 HSP90B1 chr12:104332195 5'GT 104332195 Upstream 15bp 3352 chr12 104332181 104332181 1 + G T BLCA 104332181 + 104332161 104332201 41 AAGAAGAGAAAGAAGAATCTGATGATGAAGCTGCAGTAGAG AAGAAGAGAAAGAAGAATCTTATGATGAAGCTGCAGTAGAG Direct Loss 0.950127024462206 0 NA NA prediction 0.900254048924412 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104332181 chr12:104332181 nonsynonymous SNV 0.988 3 21 hm7G_associated_SNPs_3426 0 0 1 0 4 HSP90B1 chr12:104332237 5'GT 104332237 Upstream 57bp 3353 chr6 10725233 10725233 1 + G T LUSC 10725233 + 10725213 10725253 41 GGCTTTGGCTACGCAGCACTGGTTGCTTCTGGTGGGATCAT GGCTTTGGCTACGCAGCACTTGTTGCTTCTGGTGGGATCAT Direct Loss 0.950126836286213 0 NA NA prediction 0.900253672572426 Functional Loss - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10725233 chr6:10725233 synonymous SNV . 0 21 hm7G_associated_SNPs_3427 0 0 1 0 1 TMEM14C chr6:10725270 5'GT 10725270 Upstream 38bp 3354 chr16 27230329 27230329 1 + G A rs148131512 27230329 + 27230309 27230349 41 ATCCCCGACTACTGCAGCCTGGGCGATGGGGAGGAGGAGGA ATCCCCGACTACTGCAGCCTAGGCGATGGGGAGGAGGAGGA Direct Loss 0.950115969472152 0 NA NA prediction 0.900231938944304 Functional Loss - KDM8 ENSG00000155666 CDS Human protein_coding chr16:27230329 chr16:27230329 synonymous SNV . 0 21 hm7G_associated_SNPs_3430 0 0 0 0 2 KDM8 chr16:27230282 3'AG 27230282 Downstream 48bp 3355 chr16 27230329 27230329 1 + G A rs148131512 27230329 + 27230309 27230349 41 ATCCCCGACTACTGCAGCCTGGGCGATGGGGAGGAGGAGGA ATCCCCGACTACTGCAGCCTAGGCGATGGGGAGGAGGAGGA Direct Loss 0.950115969472152 0 NA NA prediction 0.900231938944304 Functional Loss - KDM8 ENSG00000155666 CDS Human protein_coding chr16:27230329 chr16:27230329 synonymous SNV . 0 21 hm7G_associated_SNPs_3430 0 0 0 0 2 KDM8 chr16:27230367 5'GT 27230367 Upstream 39bp 3356 chr20 37353670 37353670 1 + G T UCEC 37353670 + 37353650 37353690 41 CCCTCCGGCTCCAAGGACCAGGTGGGAGGTGGTGGCGAATT CCCTCCGGCTCCAAGGACCATGTGGGAGGTGGTGGCGAATT Direct Loss 0.950086797312544 0 NA NA prediction 0.900173594625088 Functional Loss - SLC32A1 ENSG00000101438 CDS Human protein_coding chr20:37353670 chr20:37353670 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_3432 0 0 0 0 1 SLC32A1 chr20:37353757 5'GT 37353757 Upstream 88bp 3357 chr5 140037204 140037204 1 + G T BRCA 140037204 + 140037184 140037224 41 ACCCAGATCCTTTCATACCTGAGGCAGGGAACCCGTAACAA ACCCAGATCCTTTCATACCTTAGGCAGGGAACCCGTAACAA Direct Loss 0.950065256495236 0 NA NA prediction 0.900130512990472 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140037204 chr5:140037204 synonymous SNV . 0 21 hm7G_associated_SNPs_3434 0 0 1 0 2 IK chr5:140037139 3'AG 140037139 Downstream 66bp 3358 chr5 140037204 140037204 1 + G T BRCA 140037204 + 140037184 140037224 41 ACCCAGATCCTTTCATACCTGAGGCAGGGAACCCGTAACAA ACCCAGATCCTTTCATACCTTAGGCAGGGAACCCGTAACAA Direct Loss 0.950065256495236 0 NA NA prediction 0.900130512990472 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140037204 chr5:140037204 synonymous SNV . 0 21 hm7G_associated_SNPs_3434 0 0 1 0 2 IK chr5:140037247 5'GT 140037247 Upstream 44bp 3359 chr18 56390314 56390314 1 + G T BLCA 56390314 + 56390294 56390334 41 GCCCTTTTGATAGGAAATATGAATTACCGGGAGCACCCCAA GCCCTTTTGATAGGAAATATTAATTACCGGGAGCACCCCAA Direct Loss 0.950050734410487 0 NA NA prediction 0.900101468820974 Functional Loss - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56390314 chr18:56390314 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3435 0 0 1 0 1 MALT1 chr18:56390280 3'AG 56390280 Downstream 35bp 3360 chr9 135919143 135919143 1 + G A STAD 135919143 + 135919123 135919163 41 GACTTCCAGTACTTGGCTGTGCATACGGAAGCAGGCGGCAA GACTTCCAGTACTTGGCTGTACATACGGAAGCAGGCGGCAA Direct Loss 0.950010348964551 0 NA NA prediction 0.900020697929102 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919143 chr9:135919143 synonymous SNV . 0 21 hm7G_associated_SNPs_3436 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 29bp 3361 chr3 14964645 14964645 1 + G A SKCM 14964645 + 14964625 14964665 41 GACGGCTGCTTCGGGGAGCTGAAGAAGCGGGGCAGGGCTGT GACGGCTGCTTCGGGGAGCTAAAGAAGCGGGGCAGGGCTGT Direct Loss 0.950006984243714 0 NA NA prediction 0.900013968487428 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14964645 chr3:14964645 synonymous SNV . 0 21 hm7G_associated_SNPs_3437 0 0 0 0 2 FGD5 chr3:14964553 3'AG 14964553 Downstream 93bp 3362 chr3 14964645 14964645 1 + G A SKCM 14964645 + 14964625 14964665 41 GACGGCTGCTTCGGGGAGCTGAAGAAGCGGGGCAGGGCTGT GACGGCTGCTTCGGGGAGCTAAAGAAGCGGGGCAGGGCTGT Direct Loss 0.950006984243714 0 NA NA prediction 0.900013968487428 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14964645 chr3:14964645 synonymous SNV . 0 21 hm7G_associated_SNPs_3437 0 0 0 0 2 FGD5 chr3:14964682 5'GT 14964682 Upstream 38bp 3363 chr20 42265860 42265860 1 + G T LUAD 42265860 + 42265840 42265880 41 TAGATGAAACGTTCTCCTCTGAGAAGGCACGGCTGGCTCAG TAGATGAAACGTTCTCCTCTTAGAAGGCACGGCTGGCTCAG Direct Loss 0.949997290325879 0 NA NA prediction 0.899994580651757 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42265860 chr20:42265860 stopgain 0.991 1 21 hm7G_associated_SNPs_3439 0 0 1 0 1 IFT52 chr20:42265785 3'AG 42265785 Downstream 76bp 3364 chr11 94040602 94040602 1 + G T STAD 94040602 + 94040582 94040622 41 CCCTGCAGGGAAGAACCGCTGCCCCAAAGGGGCCCAGTGCC CCCTGCAGGGAAGAACCGCTTCCCCAAAGGGGCCCAGTGCC Direct Loss 0.949997169293302 0 NA NA prediction 0.899994338586603 Functional Loss - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94040602 chr11:94040602 nonsynonymous SNV 0.105 5 21 hm7G_associated_SNPs_3440 0 0 0 0 1 IZUMO1R chr11:94040590 3'AG 94040590 Downstream 13bp 3365 chr20 32848259 32848259 1 + G A LUAD 32848259 + 32848239 32848279 41 CCAACAGCCACCTGCCACCTGAGGAGAAGCTCCGAGATGAC CCAACAGCCACCTGCCACCTAAGGAGAAGCTCCGAGATGAC Direct Loss 0.949981309335166 0 NA NA prediction 0.899962618670332 Functional Loss - ASIP ENSG00000101440 CDS Human protein_coding chr20:32848259 chr20:32848259 nonsynonymous SNV 0.659 1 21 hm7G_associated_SNPs_3441 0 0 0 0 1 ASIP chr20:32848340 5'GT 32848340 Upstream 82bp 3366 chr18 72185799 72185799 1 + G A LUSC 72185799 + 72185779 72185819 41 AATGAGTTCAAGGTGTACATGGGCCACGGTGGGAAGCCCTG AATGAGTTCAAGGTGTACATAGGCCACGGTGGGAAGCCCTG Direct Loss 0.949962685509013 0 NA NA prediction 0.899925371018026 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72185799 chr18:72185799 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_3442 0 0 0 0 2 CNDP2 chr18:72185734 3'AG 72185734 Downstream 66bp 3367 chr18 72185799 72185799 1 + G A LUSC 72185799 + 72185779 72185819 41 AATGAGTTCAAGGTGTACATGGGCCACGGTGGGAAGCCCTG AATGAGTTCAAGGTGTACATAGGCCACGGTGGGAAGCCCTG Direct Loss 0.949962685509013 0 NA NA prediction 0.899925371018026 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72185799 chr18:72185799 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_3442 0 0 0 0 2 CNDP2 chr18:72185875 5'GT 72185875 Upstream 77bp 3368 chr2 37594486 37594486 1 + G A UCEC 37594486 + 37594466 37594506 41 TCTATGGGTCTCGACACTTAGCTGCAAAGATGGCATCGACC TCTATGGGTCTCGACACTTAACTGCAAAGATGGCATCGACC Direct Loss 0.949954327286104 0 NA NA prediction 0.899908654572207 Functional Loss - QPCT ENSG00000115828 CDS Human protein_coding chr2:37594486 chr2:37594486 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_3443 0 0 1 0 1 QPCT chr2:37594551 5'GT 37594551 Upstream 66bp 3369 chr5 50683505 50683505 1 + G A LUAD 50683505 + 50683485 50683525 41 TCTTCTGCCGAGCAGACCACGATGTGGTGGAGAGGGCCAGT TCTTCTGCCGAGCAGACCACAATGTGGTGGAGAGGGCCAGT Direct Loss 0.949934712156535 0 NA NA prediction 0.89986942431307 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683505 chr5:50683505 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_3444 0 0 1 0 1 ISL1 chr5:50683583 5'GT 50683583 Upstream 79bp 3370 chr15 78572680 78572680 1 + G A GBM 78572680 + 78572660 78572700 41 AGAAAGTGAGGATTACAGATGACATGGATCAGGTGGAGCTG AGAAAGTGAGGATTACAGATAACATGGATCAGGTGGAGCTG Direct Loss 0.949934425213647 0 NA NA prediction 0.899868850427295 Functional Loss - DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78572680 chr15:78572680 nonsynonymous SNV 0.876 1 21 hm7G_associated_SNPs_3445 0 0 0 0 1 DNAJA4 chr15:78572587 3'AG 78572587 Downstream 94bp 3371 chr21 34649001 34649001 1 + G A BLCA 34649001 + 34648981 34649021 41 ACACCTTGAGAGTCAGGGCTGAATTTGCAGATGAGCATTCA ACACCTTGAGAGTCAGGGCTAAATTTGCAGATGAGCATTCA Direct Loss 0.949933415990894 0 NA NA prediction 0.899866831981789 Functional Loss - IL10RB ENSG00000243646;ENSG00000249624 CDS Human other chr21:34649001 chr21:34649001 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3446 0 0 1 0 1 IL10RB chr21:34649058 5'GT 34649058 Upstream 58bp 3372 chr11 134114938 134114938 1 + G C rs149896543 134114938 + 134114918 134114958 41 TATTACCTCAACCTGGTGCTGATAGACGAGGAGGAGCGGCG TATTACCTCAACCTGGTGCTCATAGACGAGGAGGAGCGGCG Direct Loss 0.949932497500616 0 NA NA prediction 0.899864995001233 Functional Loss - VPS26B ENSG00000151502 CDS Human protein_coding chr11:134114938 chr11:134114938 synonymous SNV . 0 21 hm7G_associated_SNPs_3448 0 0 1 0 1 VPS26B chr11:134114974 5'GT 134114974 Upstream 37bp 3373 chr8 23198552 23198552 1 + G T SARC 23198552 + 23198532 23198572 41 TCCCCAGGGAAGCCAAACATGCCGCAGACCACGCGGGAATT TCCCCAGGGAAGCCAAACATTCCGCAGACCACGCGGGAATT Direct Loss 0.949924787106108 0 NA NA prediction 0.899849574212216 Functional Loss - LOXL2 ENSG00000134013 CDS Human protein_coding chr8:23198552 chr8:23198552 synonymous SNV . 0 21 hm7G_associated_SNPs_3449 0 0 0 0 1 LOXL2 chr8:23198539 3'AG 23198539 Downstream 14bp 3374 chr11 18387353 18387353 1 + G A BRCA 18387353 + 18387333 18387373 41 GTAAGTCACATAGAAGAGATGCTCCAGACAGCCTACAACAA GTAAGTCACATAGAAGAGATACTCCAGACAGCCTACAACAA Direct Loss 0.949913255296759 0 NA NA prediction 0.899826510593518 Functional Loss - GTF2H1 ENSG00000110768 CDS Human protein_coding chr11:18387353 chr11:18387353 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_3450 0 0 0 0 1 GTF2H1 chr11:18387330 3'AG 18387330 Downstream 24bp 3375 chr2 73452787 73452787 1 + G A rs562039812 73452787 + 73452767 73452807 41 TATCAGCTACTTGGACTGCTGTCAGCGGGAGCGCAGCCGCC TATCAGCTACTTGGACTGCTATCAGCGGGAGCGCAGCCGCC Direct Loss 0.949888266479594 0 NA NA prediction 0.899776532959187 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452787 chr2:73452787 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3452 0 0 1 0 2 SMYD5 chr2:73452759 3'AG 73452759 Downstream 29bp 3376 chr2 73452787 73452787 1 + G A rs562039812 73452787 + 73452767 73452807 41 TATCAGCTACTTGGACTGCTGTCAGCGGGAGCGCAGCCGCC TATCAGCTACTTGGACTGCTATCAGCGGGAGCGCAGCCGCC Direct Loss 0.949888266479594 0 NA NA prediction 0.899776532959187 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73452787 chr2:73452787 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3452 0 0 1 0 2 SMYD5 chr2:73452829 5'GT 73452829 Upstream 43bp 3377 chrX 153627737 153627737 1 + G A LUAD 153627737 + 153627717 153627757 41 GCTTCTGCCGAGGTGTCCCTGGTAAGTAGTGGAAGAGCCCC GCTTCTGCCGAGGTGTCCCTAGTAAGTAGTGGAAGAGCCCC Direct Loss 0.949882720822092 0 NA NA prediction 0.899765441644184 Functional Loss - RPL10 ENSG00000147403 CDS Human protein_coding chrX:153627737 chrX:153627737 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_3453 0 0 1 0 1 RPL10 chrX:153627737 5'GT 153627737 Upstream 1bp 3378 chr17 4701409 4701409 1 + G A SARC 4701409 + 4701389 4701429 41 TTGATGCTACCTACCGGGAAGGCATGACCAAGGAAGAGTGT TTGATGCTACCTACCGGGAAAGCATGACCAAGGAAGAGTGT Direct Loss 0.949881753255345 0 NA NA prediction 0.899763506510689 Functional Loss - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701409 chr17:4701409 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3454 0 0 1 0 1 PSMB6 chr17:4701448 5'GT 4701448 Upstream 40bp 3379 chrX 30236791 30236791 1 + G A LUAD 30236791 + 30236771 30236811 41 TCAATGTTCCTCAGGTCACTGAAGCAGAGGAAGAAGAGGCC TCAATGTTCCTCAGGTCACTAAAGCAGAGGAAGAAGAGGCC Direct Loss 0.949881642141685 0 NA NA prediction 0.899763284283369 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236791 chrX:30236791 nonsynonymous SNV 0.028 1 21 hm7G_associated_SNPs_3455 0 0 0 0 1 MAGEB2 chrX:30236693 3'AG 30236693 Downstream 99bp 3380 chr1 109241802 109241802 1 + G A BLCA 109241802 + 109241782 109241822 41 AGGTCTCCAAGGAGATCTCTGAGTCCACGGAGGTCCCCAAG AGGTCTCCAAGGAGATCTCTAAGTCCACGGAGGTCCCCAAG Direct Loss 0.949869069787766 0 NA NA prediction 0.899738139575532 Functional Loss - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109241802 chr1:109241802 synonymous SNV . 0 21 hm7G_associated_SNPs_3456 0 0 1 0 1 PRPF38B chr1:109241784 3'AG 109241784 Downstream 19bp 3381 chr15 68124994 68124994 1 + G T LUAD 68124994 + 68124974 68125014 41 TTGGCTTATCGAGAAGAAATGGTGCAACAGCTGCAAATTGT TTGGCTTATCGAGAAGAAATTGTGCAACAGCTGCAAATTGT Direct Loss 0.949868547670246 0 NA NA prediction 0.899737095340492 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68124994 chr15:68124994 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3457 0 0 0 0 2 SKOR1 chr15:68124945 3'AG 68124945 Downstream 50bp 3382 chr15 68124994 68124994 1 + G T LUAD 68124994 + 68124974 68125014 41 TTGGCTTATCGAGAAGAAATGGTGCAACAGCTGCAAATTGT TTGGCTTATCGAGAAGAAATTGTGCAACAGCTGCAAATTGT Direct Loss 0.949868547670246 0 NA NA prediction 0.899737095340492 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68124994 chr15:68124994 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3457 0 0 0 0 2 SKOR1 chr15:68125019 5'GT 68125019 Upstream 26bp 3383 chr1 150248191 150248191 1 + G C BLCA 150248191 + 150248171 150248211 41 CCATTGATTACTCCATATTTGAGTCAGAGGACAGGCTGGTG CCATTGATTACTCCATATTTCAGTCAGAGGACAGGCTGGTG Direct Loss 0.949854483107273 0 NA NA prediction 0.899708966214545 Functional Loss - C1orf54 ENSG00000118292 CDS Human protein_coding chr1:150248191 chr1:150248191 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3458 0 0 0 0 2 C1orf54 chr1:150248150 3'AG 150248150 Downstream 42bp 3384 chr1 150248191 150248191 1 + G C BLCA 150248191 + 150248171 150248211 41 CCATTGATTACTCCATATTTGAGTCAGAGGACAGGCTGGTG CCATTGATTACTCCATATTTCAGTCAGAGGACAGGCTGGTG Direct Loss 0.949854483107273 0 NA NA prediction 0.899708966214545 Functional Loss - C1orf54 ENSG00000118292 CDS Human protein_coding chr1:150248191 chr1:150248191 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3458 0 0 0 0 2 C1orf54 chr1:150248208 5'GT 150248208 Upstream 18bp 3385 chr7 56123350 56123350 1 + G A SKCM 56123350 + 56123330 56123370 41 GAATAATCACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCC GAATAATCACTGAAGGATTTAAAGCTGCAAAGGAAAAGGCC Direct Loss 0.949845510731186 0 NA NA prediction 0.899691021462371 Functional Loss - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56123350 chr7:56123350 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3459 0 0 1 0 1 CCT6A chr7:56123317 3'AG 56123317 Downstream 34bp 3386 chr1 150460400 150460400 1 + G T SARC 150460400 + 150460380 150460420 41 TTTTTGAGGAGCTGTGGGCTGCTCAGGTAAAGAGATTAGCA TTTTTGAGGAGCTGTGGGCTTCTCAGGTAAAGAGATTAGCA Direct Loss 0.949825278375698 0 NA NA prediction 0.899650556751395 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150460400 chr1:150460400 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_3461 0 0 1 1 1 TARS2 chr1:150460334 3'AG 150460334 Downstream 67bp 3387 chr16 57005005 57005005 1 + G A LUAD 57005005 + 57004985 57005025 41 TTCACCCTGAAGCTGGTCCTGAAGGGACAGGTGAGTGAGGC TTCACCCTGAAGCTGGTCCTAAAGGGACAGGTGAGTGAGGC Direct Loss 0.949808575193785 0 NA NA prediction 0.899617150387569 Functional Loss - CETP ENSG00000087237 CDS Human protein_coding chr16:57005005 chr16:57005005 synonymous SNV . 0 21 hm7G_associated_SNPs_3463 0 0 0 0 2 CETP chr16:57004945 3'AG 57004945 Downstream 61bp 3388 chr16 57005005 57005005 1 + G A LUAD 57005005 + 57004985 57005025 41 TTCACCCTGAAGCTGGTCCTGAAGGGACAGGTGAGTGAGGC TTCACCCTGAAGCTGGTCCTAAAGGGACAGGTGAGTGAGGC Direct Loss 0.949808575193785 0 NA NA prediction 0.899617150387569 Functional Loss - CETP ENSG00000087237 CDS Human protein_coding chr16:57005005 chr16:57005005 synonymous SNV . 0 21 hm7G_associated_SNPs_3463 0 0 0 0 2 CETP chr16:57005014 5'GT 57005014 Upstream 10bp 3389 chr18 28966700 28966700 1 + G C BLCA 28966700 + 28966680 28966720 41 TACAAAATGGCAAACAGTCAGAAGACAAAAGCGGGAGTGGA TACAAAATGGCAAACAGTCACAAGACAAAAGCGGGAGTGGA Direct Loss 0.949808302749524 0 NA NA prediction 0.899616605499048 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28966700 chr18:28966700 nonsynonymous SNV 0.991 2 21 hm7G_associated_SNPs_3464 0 0 0 0 2 DSG4 chr18:28966651 3'AG 28966651 Downstream 50bp 3390 chr18 28966700 28966700 1 + G C BLCA 28966700 + 28966680 28966720 41 TACAAAATGGCAAACAGTCAGAAGACAAAAGCGGGAGTGGA TACAAAATGGCAAACAGTCACAAGACAAAAGCGGGAGTGGA Direct Loss 0.949808302749524 0 NA NA prediction 0.899616605499048 Functional Loss - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28966700 chr18:28966700 nonsynonymous SNV 0.991 2 21 hm7G_associated_SNPs_3464 0 0 0 0 2 DSG4 chr18:28966782 5'GT 28966782 Upstream 83bp 3391 chr3 121605194 121605194 1 + G T UCEC 121605194 + 121605174 121605214 41 TCTTTCTTATTTTAGGAAATGATTTGCAGCTGAGTGAATCA TCTTTCTTATTTTAGGAAATTATTTGCAGCTGAGTGAATCA Direct Loss 0.949801518596473 0 NA NA prediction 0.899603037192945 Functional Loss - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121605194 chr3:121605194 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3465 0 0 0 0 1 EAF2 chr3:121605189 3'AG 121605189 Downstream 6bp 3392 chr14 50249093 50249093 1 + G C TGCT 50249093 + 50249073 50249113 41 TTGTTTTAAATGCAGGTTATGGCACACAGCTTGTGCCAGCG TTGTTTTAAATGCAGGTTATCGCACACAGCTTGTGCCAGCG Direct Loss 0.949780085349955 0 NA NA prediction 0.89956017069991 Functional Loss - KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50249093 chr14:50249093 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3467 0 0 1 0 2 KLHDC2 chr14:50249088 3'AG 50249088 Downstream 6bp 3393 chr14 50249093 50249093 1 + G C TGCT 50249093 + 50249073 50249113 41 TTGTTTTAAATGCAGGTTATGGCACACAGCTTGTGCCAGCG TTGTTTTAAATGCAGGTTATCGCACACAGCTTGTGCCAGCG Direct Loss 0.949780085349955 0 NA NA prediction 0.89956017069991 Functional Loss - KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50249093 chr14:50249093 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3467 0 0 1 0 2 KLHDC2 chr14:50249175 5'GT 50249175 Upstream 83bp 3394 chr12 81101966 81101966 1 + G A ESCA 81101966 + 81101946 81101986 41 CGGCTGGATCAGCAGGAGAAGATGCAGGAGCTGGGGGTGGA CGGCTGGATCAGCAGGAGAAAATGCAGGAGCTGGGGGTGGA Direct Loss 0.949771122732185 0 NA NA prediction 0.89954224546437 Functional Loss - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81101966 chr12:81101966 synonymous SNV . 0 21 hm7G_associated_SNPs_3468 0 0 0 0 1 MYF6 chr12:81102017 5'GT 81102017 Upstream 52bp 3395 chr14 39648361 39648361 1 + G A UCEC 39648361 + 39648341 39648381 41 AAGAAGAGAGAAAGCAGGTTGAAAATGAAAGGAGAGAACTG AAGAAGAGAGAAAGCAGGTTAAAAATGAAAGGAGAGAACTG Direct Loss 0.9497574254222 0 NA NA prediction 0.8995148508444 Functional Loss - PNN ENSG00000100941 CDS Human protein_coding chr14:39648361 chr14:39648361 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3469 0 0 1 0 2 PNN chr14:39648295 3'AG 39648295 Downstream 67bp 3396 chr14 39648361 39648361 1 + G A UCEC 39648361 + 39648341 39648381 41 AAGAAGAGAGAAAGCAGGTTGAAAATGAAAGGAGAGAACTG AAGAAGAGAGAAAGCAGGTTAAAAATGAAAGGAGAGAACTG Direct Loss 0.9497574254222 0 NA NA prediction 0.8995148508444 Functional Loss - PNN ENSG00000100941 CDS Human protein_coding chr14:39648361 chr14:39648361 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3469 0 0 1 0 2 PNN chr14:39648450 5'GT 39648450 Upstream 90bp 3397 chr13 39621219 39621219 1 + G T DLBC 39621219 + 39621199 39621239 41 ATAAAAGAATCCAAGTATTTGATAAAGACACTGGGGAGTGG ATAAAAGAATCCAAGTATTTTATAAAGACACTGGGGAGTGG Direct Loss 0.949753363958079 0 NA NA prediction 0.899506727916159 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39621219 chr13:39621219 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3470 0 0 1 0 2 NHLRC3 chr13:39621177 3'AG 39621177 Downstream 43bp 3398 chr13 39621219 39621219 1 + G T DLBC 39621219 + 39621199 39621239 41 ATAAAAGAATCCAAGTATTTGATAAAGACACTGGGGAGTGG ATAAAAGAATCCAAGTATTTTATAAAGACACTGGGGAGTGG Direct Loss 0.949753363958079 0 NA NA prediction 0.899506727916159 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39621219 chr13:39621219 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3470 0 0 1 0 2 NHLRC3 chr13:39621289 5'GT 39621289 Upstream 71bp 3399 chr3 184086000 184086000 1 + G A SKCM 184086000 + 184085980 184086020 41 CTATGGGGGCCTGCTCATGAGGCTGCAGGGGGATGCCAACA CTATGGGGGCCTGCTCATGAAGCTGCAGGGGGATGCCAACA Direct Loss 0.949724461587913 0 NA NA prediction 0.899448923175826 Functional Loss - POLR2H ENSG00000163882 CDS Human protein_coding chr3:184086000 chr3:184086000 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3475 0 0 1 1 1 POLR2H chr3:184085965 3'AG 184085965 Downstream 36bp 3400 chr1 12009852 12009852 1 + G T LUSC 12009852 + 12009832 12009872 41 GCTTGGCCTAGGGGAGGACTGGAATGTGGAGAAGGGGACGT GCTTGGCCTAGGGGAGGACTTGAATGTGGAGAAGGGGACGT Direct Loss 0.94971891062817 0 NA NA prediction 0.899437821256339 Functional Loss - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12009852 chr1:12009852 nonsynonymous SNV 0.891 4 21 hm7G_associated_SNPs_3476 0 0 1 0 1 PLOD1 chr1:12009830 3'AG 12009830 Downstream 23bp 3401 chr1 159275846 159275846 1 + G A GBM 159275846 + 159275826 159275866 41 CCCTCTTCCTCAGGTGCCATGGTTGGAGGAACTGGGATGTG CCCTCTTCCTCAGGTGCCATAGTTGGAGGAACTGGGATGTG Direct Loss 0.949706492427403 0 NA NA prediction 0.899412984854805 Functional Loss - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159275846 chr1:159275846 nonsynonymous SNV 0.098 0 21 hm7G_associated_SNPs_3477 0 0 0 0 1 FCER1A chr1:159275778 3'AG 159275778 Downstream 69bp 3402 chr17 18668067 18668067 1 + G T BLCA 18668067 + 18668047 18668087 41 TCCTGCAGATACTGGGATCTGAAAAGTGGGGTTTGCACACG TCCTGCAGATACTGGGATCTTAAAAGTGGGGTTTGCACACG Direct Loss 0.949698853855322 0 NA NA prediction 0.899397707710644 Functional Loss - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18668067 chr17:18668067 synonymous SNV . 0 21 hm7G_associated_SNPs_3478 0 0 0 0 1 FBXW10 chr17:18668055 3'AG 18668055 Downstream 13bp 3403 chr20 16730569 16730569 1 + G T UCEC 16730569 + 16730549 16730589 41 TTTATGGTGATGGCCAGGACGAGATGGGAGTCGTGGGTTAT TTTATGGTGATGGCCAGGACTAGATGGGAGTCGTGGGTTAT Direct Loss 0.949690033650594 0 NA NA prediction 0.899380067301188 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730569 chr20:16730569 stopgain 0.990 0 21 hm7G_associated_SNPs_3479 0 0 0 0 2 OTOR chr20:16730548 3'AG 16730548 Downstream 22bp 3404 chr20 16730569 16730569 1 + G T UCEC 16730569 + 16730549 16730589 41 TTTATGGTGATGGCCAGGACGAGATGGGAGTCGTGGGTTAT TTTATGGTGATGGCCAGGACTAGATGGGAGTCGTGGGTTAT Direct Loss 0.949690033650594 0 NA NA prediction 0.899380067301188 Functional Loss - OTOR ENSG00000125879 CDS Human protein_coding chr20:16730569 chr20:16730569 stopgain 0.990 0 21 hm7G_associated_SNPs_3479 0 0 0 0 2 OTOR chr20:16730655 5'GT 16730655 Upstream 87bp 3405 chr7 129910562 129910562 1 + G T SARC 129910562 + 129910542 129910582 41 GACAAAGAGAATGAAGAAATGCTTTTTAATAGGAGAAGAGA GACAAAGAGAATGAAGAAATTCTTTTTAATAGGAGAAGAGA Direct Loss 0.949682962222943 0 NA NA prediction 0.899365924445886 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129910562 chr7:129910562 nonsynonymous SNV 0.897 1 21 hm7G_associated_SNPs_3480 0 0 0 0 2 CPA2 chr7:129910533 3'AG 129910533 Downstream 30bp 3406 chr7 129910562 129910562 1 + G T SARC 129910562 + 129910542 129910582 41 GACAAAGAGAATGAAGAAATGCTTTTTAATAGGAGAAGAGA GACAAAGAGAATGAAGAAATTCTTTTTAATAGGAGAAGAGA Direct Loss 0.949682962222943 0 NA NA prediction 0.899365924445886 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129910562 chr7:129910562 nonsynonymous SNV 0.897 1 21 hm7G_associated_SNPs_3480 0 0 0 0 2 CPA2 chr7:129910628 5'GT 129910628 Upstream 67bp 3407 chr14 20923852 20923852 1 + G T SARC 20923852 + 20923832 20923872 41 GTGGCGGAAGACGGGGATGAGCTCAGGACAGGTAAGGGAAT GTGGCGGAAGACGGGGATGATCTCAGGACAGGTAAGGGAAT Direct Loss 0.949678608551624 0 NA NA prediction 0.899357217103247 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20923852 chr14:20923852 nonsynonymous SNV 0.023 0 21 hm7G_associated_SNPs_3481 0 0 1 0 1 APEX1 chr14:20923862 5'GT 20923862 Upstream 11bp 3408 chr1 52878212 52878212 1 + G A UCEC 52878212 + 52878192 52878232 41 TATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGAGTTAG TATGTATTAGAGGAAGCTGAACAACTGGAGCCTCGAGTTAG Direct Loss 0.949670171264425 0 NA NA prediction 0.89934034252885 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52878212 chr1:52878212 synonymous SNV . 0 21 hm7G_associated_SNPs_3483 0 0 1 0 2 PRPF38A chr1:52878186 3'AG 52878186 Downstream 27bp 3409 chr1 52878212 52878212 1 + G A UCEC 52878212 + 52878192 52878232 41 TATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGAGTTAG TATGTATTAGAGGAAGCTGAACAACTGGAGCCTCGAGTTAG Direct Loss 0.949670171264425 0 NA NA prediction 0.89934034252885 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52878212 chr1:52878212 synonymous SNV . 0 21 hm7G_associated_SNPs_3483 0 0 1 0 2 PRPF38A chr1:52878296 5'GT 52878296 Upstream 85bp 3410 chr12 125626689 125626689 1 + G T LUAD 125626689 + 125626669 125626709 41 CCGTCAAACAGATCATCGCTGGAAAAGCCGTGGAGCAAGGA CCGTCAAACAGATCATCGCTTGAAAAGCCGTGGAGCAAGGA Direct Loss 0.949668919061566 0 NA NA prediction 0.899337838123132 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125626689 chr12:125626689 stopgain 0.019 1 21 hm7G_associated_SNPs_3484 0 0 1 0 1 AACS chr12:125626638 3'AG 125626638 Downstream 52bp 3411 chr5 54404187 54404187 1 + G T LUAD 54404187 + 54404167 54404207 41 TTGGAATGAATATGGTTTGTGCTGGAAGCCTCCGAGGTGGA TTGGAATGAATATGGTTTGTTCTGGAAGCCTCCGAGGTGGA Direct Loss 0.949665980217372 0 NA NA prediction 0.899331960434744 Functional Loss - GZMA ENSG00000145649 CDS Human protein_coding chr5:54404187 chr5:54404187 nonsynonymous SNV 0.737 5 21 hm7G_associated_SNPs_3485 0 0 0 0 1 GZMA chr5:54404222 5'GT 54404222 Upstream 36bp 3412 chr1 92508453 92508453 1 + G T STAD 92508453 + 92508433 92508473 41 CACTGGATTTGAGAGGTTATGGAGAAACAGATGCTCCCATT CACTGGATTTGAGAGGTTATTGAGAAACAGATGCTCCCATT Direct Loss 0.949652258419168 0 NA NA prediction 0.899304516838336 Functional Loss - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92508453 chr1:92508453 stopgain 1.000 1 21 hm7G_associated_SNPs_3488 0 0 0 0 2 EPHX4 chr1:92508380 3'AG 92508380 Downstream 74bp 3413 chr1 92508453 92508453 1 + G T STAD 92508453 + 92508433 92508473 41 CACTGGATTTGAGAGGTTATGGAGAAACAGATGCTCCCATT CACTGGATTTGAGAGGTTATTGAGAAACAGATGCTCCCATT Direct Loss 0.949652258419168 0 NA NA prediction 0.899304516838336 Functional Loss - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92508453 chr1:92508453 stopgain 1.000 1 21 hm7G_associated_SNPs_3488 0 0 0 0 2 EPHX4 chr1:92508537 5'GT 92508537 Upstream 85bp 3414 chr12 7175059 7175059 1 + G A SARC 7175059 + 7175039 7175079 41 GAGGAGCCATATTACTACATGGAAAATGGAGGAGGTGGTAG GAGGAGCCATATTACTACATAGAAAATGGAGGAGGTGGTAG Direct Loss 0.949651075876483 0 NA NA prediction 0.899302151752966 Functional Loss - C1S ENSG00000182326 CDS Human protein_coding chr12:7175059 chr12:7175059 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_3489 0 0 1 0 1 C1S chr12:7175075 5'GT 7175075 Upstream 17bp 3415 chr16 4492299 4492299 1 + G A STAD 4492299 + 4492279 4492319 41 AGTTGACATTCAATCAAGCTGCAAAGGGGGTCAACAAGGAG AGTTGACATTCAATCAAGCTACAAAGGGGGTCAACAAGGAG Direct Loss 0.949640866256115 0 NA NA prediction 0.89928173251223 Functional Loss - DNAJA3 ENSG00000103423 CDS Human protein_coding chr16:4492299 chr16:4492299 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_3490 0 0 1 0 1 DNAJA3 chr16:4492269 3'AG 4492269 Downstream 31bp 3416 chr11 71850518 71850518 1 + G A LUSC 71850518 + 71850498 71850538 41 CTGGCACAAAGGCTGGAATTGGACCTCAGGTGAGGACCTGA CTGGCACAAAGGCTGGAATTAGACCTCAGGTGAGGACCTGA Direct Loss 0.949633523223206 0 NA NA prediction 0.899267046446412 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71850518 chr11:71850518 stopgain 0.372 0 21 hm7G_associated_SNPs_3491 0 0 0 0 1 FOLR3 chr11:71850526 5'GT 71850526 Upstream 9bp 3417 chr11 130068311 130068311 1 + G T UCEC 130068311 + 130068291 130068331 41 CAACAGCGACGAGCAGGGGTGCAGTGAGTGCTGGGGAGGGG CAACAGCGACGAGCAGGGGTTCAGTGAGTGCTGGGGAGGGG Direct Loss 0.949632400443096 0 NA NA prediction 0.899264800886193 Functional Loss - ST14 ENSG00000149418 CDS Human protein_coding chr11:130068311 chr11:130068311 nonsynonymous SNV 0.775 5 21 hm7G_associated_SNPs_3492 0 0 0 0 1 ST14 chr11:130068313 5'GT 130068313 Upstream 3bp 3418 chrX 12838909 12838909 1 + G C LIHC 12838909 + 12838889 12838929 41 AGAGGACAAAATGAAACACTGCACCAAGATTCAGGTACTGT AGAGGACAAAATGAAACACTCCACCAAGATTCAGGTACTGT Direct Loss 0.949627910619023 0 NA NA prediction 0.899255821238045 Functional Loss - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12838909 chrX:12838909 nonsynonymous SNV 0.973 1 21 hm7G_associated_SNPs_3494 0 0 1 0 1 PRPS2 chrX:12838922 5'GT 12838922 Upstream 14bp 3419 chr8 33355977 33355977 1 + G T COAD 33355977 + 33355957 33355997 41 ATAAACTGGATGCCAGCAGTGATGAAGATCAGGATGGTAAA ATAAACTGGATGCCAGCAGTTATGAAGATCAGGATGGTAAA Direct Loss 0.94961256914272 0 NA NA prediction 0.89922513828544 Functional Loss - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33355977 chr8:33355977 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_3499 0 0 1 0 1 MAK16 chr8:33355950 3'AG 33355950 Downstream 28bp 3420 chr16 20788869 20788869 1 + G C MESO 20788869 + 20788849 20788889 41 GATTGTATCAGAGAACTCCAGAGAGGGGTGGGGGAACCTCA GATTGTATCAGAGAACTCCACAGAGGGGTGGGGGAACCTCA Direct Loss 0.94959993435178 0 NA NA prediction 0.89919986870356 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20788869 chr16:20788869 nonsynonymous SNV 0.989 3 21 hm7G_associated_SNPs_3501 0 0 1 0 1 ACSM3 chr16:20788902 5'GT 20788902 Upstream 34bp 3421 chr8 145151130 145151130 1 + G T BLCA 145151130 + 145151110 145151150 41 GCGTGTGCTACACGGAGGATGAAGCTAAGGAGCTGGCTGCG GCGTGTGCTACACGGAGGATTAAGCTAAGGAGCTGGCTGCG Direct Loss 0.949584688900801 0 NA NA prediction 0.899169377801602 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145151130 chr8:145151130 stopgain 0.839 1 21 hm7G_associated_SNPs_3505 0 0 1 0 1 CYC1 chr8:145151153 5'GT 145151153 Upstream 24bp 3422 chr4 141445376 141445376 1 + G C rs536562609 141445376 + 141445356 141445396 41 CGTCGTTTCCGTTGCCGGCTGTTTGCAGTGGGGAAACCGAG CGTCGTTTCCGTTGCCGGCTCTTTGCAGTGGGGAAACCGAG Direct Loss 0.949574639358566 0 NA NA prediction 0.899149278717131 Functional Loss - ELMOD2 ENSG00000179387 UTR5 Human protein_coding chr4:141445376 chr4:141445376 . . 0 21 hm7G_associated_SNPs_3506 0 0 1 0 1 ELMOD2 chr4:141445434 5'GT 141445434 Upstream 59bp 3423 chr7 43846592 43846592 1 + G A LUSC 43846592 + 43846572 43846612 41 GCAGTCCACTGTCATGGATTGAAGAAAAAGGACCTGGTCTA GCAGTCCACTGTCATGGATTAAAGAAAAAGGACCTGGTCTA Direct Loss 0.949573733340673 0 NA NA prediction 0.899147466681345 Functional Loss - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43846592 chr7:43846592 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3507 0 0 1 0 1 BLVRA chr7:43846576 3'AG 43846576 Downstream 17bp 3424 chr3 93783283 93783283 1 + G C BRCA 93783283 + 93783263 93783303 41 TTTTTCTTATCGTCATAGCTGAAAGCAAAATCAGAGGGGAA TTTTTCTTATCGTCATAGCTCAAAGCAAAATCAGAGGGGAA Direct Loss 0.949567982471888 0 NA NA prediction 0.899135964943775 Functional Loss - NSUN3 ENSG00000178694 CDS Human protein_coding chr3:93783283 chr3:93783283 synonymous SNV . 0 21 hm7G_associated_SNPs_3508 0 0 0 0 1 NSUN3 chr3:93783281 3'AG 93783281 Downstream 3bp 3425 chr14 23793464 23793464 1 + G A OV 23793464 + 23793444 23793484 41 CCCGCTCTCGATTCTACAGTGGTTTTAACAGCAGGCCCCGG CCCGCTCTCGATTCTACAGTAGTTTTAACAGCAGGCCCCGG Direct Loss 0.949562815237992 0 NA NA prediction 0.899125630475984 Functional Loss - BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23793464 chr14:23793464 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3509 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23793498 5'GT 23793498 Upstream 35bp 3426 chr8 55049108 55049108 1 + G A BRCA 55049108 + 55049088 55049128 41 TCGGAGAAGAGGTAGAAAATGTGGCAGAGGCCATAAAGGAG TCGGAGAAGAGGTAGAAAATATGGCAGAGGCCATAAAGGAG Direct Loss 0.949556149095303 0 NA NA prediction 0.899112298190605 Functional Loss - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55049108 chr8:55049108 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3510 0 0 1 0 1 MRPL15 chr8:55049071 3'AG 55049071 Downstream 38bp 3427 chr15 45437155 45437155 1 + G A LUSC 45437155 + 45437135 45437175 41 GAAAATCTCCGGGGAGCTCTGAAGGAGAGCGGGTTGAGCAT GAAAATCTCCGGGGAGCTCTAAAGGAGAGCGGGTTGAGCAT Direct Loss 0.949537821939794 0 NA NA prediction 0.899075643879589 Functional Loss - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45437155 chr15:45437155 synonymous SNV . 0 21 hm7G_associated_SNPs_3511 0 0 0 0 1 DUOX1 chr15:45437093 3'AG 45437093 Downstream 63bp 3428 chr2 172822934 172822934 1 + G C HNSC 172822934 + 172822914 172822954 41 TCTGTTTTATCTGCAGATTTGAGAAGTATAATAAGGATGGA TCTGTTTTATCTGCAGATTTCAGAAGTATAATAAGGATGGA Direct Loss 0.949536730758298 0 NA NA prediction 0.899073461516596 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172822934 chr2:172822934 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3512 0 0 1 0 1 HAT1 chr2:172822930 3'AG 172822930 Downstream 5bp 3429 chr20 54941178 54941178 1 + G A COAD 54941178 + 54941158 54941198 41 CTCGGATTTAAAGAGTCCCTGGTACAGTCAAAAATGGCAGC CTCGGATTTAAAGAGTCCCTAGTACAGTCAAAAATGGCAGC Direct Loss 0.949503199403781 0 NA NA prediction 0.899006398807561 Functional Loss - FAM210B ENSG00000124098 CDS Human protein_coding chr20:54941178 chr20:54941178 synonymous SNV . 0 21 hm7G_associated_SNPs_3514 0 0 0 0 1 FAM210B chr20:54941127 3'AG 54941127 Downstream 52bp 3430 chr4 185940564 185940564 1 + G C LUSC 185940564 + 185940544 185940584 41 ACCCCCGTTTCTCATAAAGTGATAGAAAAGCGGAGGAGGGA ACCCCCGTTTCTCATAAAGTCATAGAAAAGCGGAGGAGGGA Direct Loss 0.949497151479873 0 NA NA prediction 0.898994302959746 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185940564 chr4:185940564 synonymous SNV . 0 21 hm7G_associated_SNPs_3515 0 0 0 0 2 HELT chr4:185940541 3'AG 185940541 Downstream 24bp 3431 chr4 185940564 185940564 1 + G C LUSC 185940564 + 185940544 185940584 41 ACCCCCGTTTCTCATAAAGTGATAGAAAAGCGGAGGAGGGA ACCCCCGTTTCTCATAAAGTCATAGAAAAGCGGAGGAGGGA Direct Loss 0.949497151479873 0 NA NA prediction 0.898994302959746 Functional Loss - HELT ENSG00000187821 CDS Human protein_coding chr4:185940564 chr4:185940564 synonymous SNV . 0 21 hm7G_associated_SNPs_3515 0 0 0 0 2 HELT chr4:185940645 5'GT 185940645 Upstream 82bp 3432 chr16 56686913 56686913 1 + G C rs142263549 56686913 + 56686893 56686933 41 CTCTTGCTGCCCCGTGGGCTGTGCCAAGTGTGCCCAGGGCT CTCTTGCTGCCCCGTGGGCTCTGCCAAGTGTGCCCAGGGCT Direct Loss 0.949492158958444 0 NA NA prediction 0.898984317916888 Functional Loss - MT1B ENSG00000169688 CDS Human protein_coding chr16:56686913 chr16:56686913 nonsynonymous SNV 0.985 1 21 hm7G_associated_SNPs_3516 0 0 0 0 1 MT1B chr16:56686886 3'AG 56686886 Downstream 28bp 3433 chr5 150405020 150405020 1 + G A UCS 150405020 + 150405000 150405040 41 TACGTCCTCTTTGTCAACGTGGCCAGCTACTGAGGCCTGAC TACGTCCTCTTTGTCAACGTAGCCAGCTACTGAGGCCTGAC Direct Loss 0.949490361135993 0 NA NA prediction 0.898980722271987 Functional Loss - GPX3 ENSG00000211445 CDS Human protein_coding chr5:150405020 chr5:150405020 unknown . 0 21 hm7G_associated_SNPs_3519 0 0 1 1 1 GPX3 chr5:150405054 5'GT 150405054 Upstream 35bp 3434 chrX 49105132 49105132 1 + G T LIHC 49105132 + 49105112 49105152 41 CTGGCAGAGATCCAAGAACTGCACCAGAGTGTCCGGGCGGC CTGGCAGAGATCCAAGAACTTCACCAGAGTGTCCGGGCGGC Direct Loss 0.949486206662903 0 NA NA prediction 0.898972413325806 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105132 chrX:49105132 synonymous SNV . 0 21 hm7G_associated_SNPs_3521 0 0 1 0 2 CCDC22 chrX:49105094 3'AG 49105094 Downstream 39bp 3435 chrX 49105132 49105132 1 + G T LIHC 49105132 + 49105112 49105152 41 CTGGCAGAGATCCAAGAACTGCACCAGAGTGTCCGGGCGGC CTGGCAGAGATCCAAGAACTTCACCAGAGTGTCCGGGCGGC Direct Loss 0.949486206662903 0 NA NA prediction 0.898972413325806 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105132 chrX:49105132 synonymous SNV . 0 21 hm7G_associated_SNPs_3521 0 0 1 0 2 CCDC22 chrX:49105195 5'GT 49105195 Upstream 64bp 3436 chr1 46650034 46650034 1 + G T THYM 46650034 + 46650014 46650054 41 TTGGTTTCCTGGGCTGCTATGGTGCTAAGACTGAGAGCAAG TTGGTTTCCTGGGCTGCTATTGTGCTAAGACTGAGAGCAAG Direct Loss 0.949460853405382 0 NA NA prediction 0.898921706810764 Functional Loss - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46650034 chr1:46650034 nonsynonymous SNV 0.985 5 21 hm7G_associated_SNPs_3522 0 0 0 0 1 TSPAN1 chr1:46650069 5'GT 46650069 Upstream 36bp 3437 chr15 41105568 41105568 1 + G A BRCA 41105568 + 41105548 41105588 41 ACTATCGCCTCCCAGACAGTGATGACGACGAGGATGAGGAG ACTATCGCCTCCCAGACAGTAATGACGACGAGGATGAGGAG Direct Loss 0.949458738566302 0 NA NA prediction 0.898917477132603 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105568 chr15:41105568 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_3523 0 0 0 0 2 ZFYVE19 chr15:41105536 3'AG 41105536 Downstream 33bp 3438 chr15 41105568 41105568 1 + G A BRCA 41105568 + 41105548 41105588 41 ACTATCGCCTCCCAGACAGTGATGACGACGAGGATGAGGAG ACTATCGCCTCCCAGACAGTAATGACGACGAGGATGAGGAG Direct Loss 0.949458738566302 0 NA NA prediction 0.898917477132603 Functional Loss - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105568 chr15:41105568 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_3523 0 0 0 0 2 ZFYVE19 chr15:41105615 5'GT 41105615 Upstream 48bp 3439 chr19 33076796 33076796 1 + G A BLCA 33076796 + 33076776 33076816 41 TTATACAGATGGCAAGATATGGACAACTAAGTGAGAAGGTA TTATACAGATGGCAAGATATAGACAACTAAGTGAGAAGGTA Direct Loss 0.949458565518369 0 NA NA prediction 0.898917131036738 Functional Loss - PDCD5 ENSG00000105185 CDS Human protein_coding chr19:33076796 chr19:33076796 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_3524 0 0 1 0 2 PDCD5 chr19:33076722 3'AG 33076722 Downstream 75bp 3440 chr19 33076796 33076796 1 + G A BLCA 33076796 + 33076776 33076816 41 TTATACAGATGGCAAGATATGGACAACTAAGTGAGAAGGTA TTATACAGATGGCAAGATATAGACAACTAAGTGAGAAGGTA Direct Loss 0.949458565518369 0 NA NA prediction 0.898917131036738 Functional Loss - PDCD5 ENSG00000105185 CDS Human protein_coding chr19:33076796 chr19:33076796 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_3524 0 0 1 0 2 PDCD5 chr19:33076813 5'GT 33076813 Upstream 18bp 3441 chr7 117864981 117864981 1 + G C ESCA 117864981 + 117864961 117865001 41 TAAAGAAACTTCACAGAGCTGCTTCAGTCGGGGATTTGAAG TAAAGAAACTTCACAGAGCTCCTTCAGTCGGGGATTTGAAG Direct Loss 0.949453319239082 0 NA NA prediction 0.898906638478165 Functional Loss - ANKRD7 ENSG00000106013 CDS Human protein_coding chr7:117864981 chr7:117864981 nonsynonymous SNV 0.365 2 21 hm7G_associated_SNPs_3525 0 0 0 0 1 ANKRD7 chr7:117865063 5'GT 117865063 Upstream 83bp 3442 chr2 203147126 203147126 1 + G A CESC 203147126 + 203147106 203147146 41 AAGCAGCTGAAAAAAGTTCTGAAGAAAATAGTAAAAGAAGC AAGCAGCTGAAAAAAGTTCTAAAGAAAATAGTAAAAGAAGC Direct Loss 0.949452886350958 0 NA NA prediction 0.898905772701917 Functional Loss - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203147126 chr2:203147126 synonymous SNV . 0 21 hm7G_associated_SNPs_3526 0 0 1 0 2 NOP58 chr2:203147074 3'AG 203147074 Downstream 53bp 3443 chr2 203147126 203147126 1 + G A CESC 203147126 + 203147106 203147146 41 AAGCAGCTGAAAAAAGTTCTGAAGAAAATAGTAAAAGAAGC AAGCAGCTGAAAAAAGTTCTAAAGAAAATAGTAAAAGAAGC Direct Loss 0.949452886350958 0 NA NA prediction 0.898905772701917 Functional Loss - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203147126 chr2:203147126 synonymous SNV . 0 21 hm7G_associated_SNPs_3526 0 0 1 0 2 NOP58 chr2:203147195 5'GT 203147195 Upstream 70bp 3444 chr20 61575032 61575032 1 + G A UCEC 61575032 + 61575012 61575052 41 GGAGACCTCCTCCACACCATGCAGAGGCAGAAGGTGGGGCC GGAGACCTCCTCCACACCATACAGAGGCAGAAGGTGGGGCC Direct Loss 0.949446890484113 0 NA NA prediction 0.898893780968226 Functional Loss - GID8 ENSG00000101193 CDS Human protein_coding chr20:61575032 chr20:61575032 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_3529 0 0 1 0 1 GID8 chr20:61575044 5'GT 61575044 Upstream 13bp 3445 chr19 54650346 54650346 1 + G C BLCA 54650346 + 54650326 54650366 41 CCCTACCTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGA CCCTACCTCAGGAAAACTCTCAAGATGATAAGAAGAGGGGA Direct Loss 0.949432790405092 0 NA NA prediction 0.898865580810185 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54650346 chr19:54650346 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3531 0 0 1 0 2 CNOT3 chr19:54650337 3'AG 54650337 Downstream 10bp 3446 chr19 54650346 54650346 1 + G C BLCA 54650346 + 54650326 54650366 41 CCCTACCTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGA CCCTACCTCAGGAAAACTCTCAAGATGATAAGAAGAGGGGA Direct Loss 0.949432790405092 0 NA NA prediction 0.898865580810185 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54650346 chr19:54650346 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3531 0 0 1 0 2 CNOT3 chr19:54650393 5'GT 54650393 Upstream 48bp 3447 chr3 195955032 195955032 1 + G T READ 195955032 + 195955012 195955052 41 TGATGCTGGTCATGGTGGAAGGCTTTGGGGGGAAGGAGGCA TGATGCTGGTCATGGTGGAATGCTTTGGGGGGAAGGAGGCA Direct Loss 0.949428064545601 0 NA NA prediction 0.898856129091203 Functional Loss - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955032 chr3:195955032 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3533 0 0 0 0 1 SLC51A chr3:195954986 3'AG 195954986 Downstream 47bp 3448 chr19 10943800 10943800 1 - C T STAD 10943800 - 10943780 10943820 41 GAGGCACGTGACCGCAACCTGCAAGAGGGCAACTTGGAGCG GAGGCACGTGACCGCAACCTACAAGAGGGCAACTTGGAGCG Direct Loss 0.949425363504851 0 NA NA prediction 0.898850727009702 Functional Loss - TMED1 ENSG00000079805;ENSG00000099203 CDS Human other chr19:10943800 chr19:10943800 nonsynonymous SNV 0.991 0 21 hm7G_associated_SNPs_3534 0 0 1 0 1 TMED1 chr19:10943889 3'AG 10943889 Downstream 90bp 3449 chr9 132985014 132985014 1 + G T LUAD 132985014 + 132984994 132985034 41 GTGGATGCCATTTACCAGATGGTGGTGAGAAGCCGGGTCTC GTGGATGCCATTTACCAGATTGTGGTGAGAAGCCGGGTCTC Direct Loss 0.949422176580859 0 NA NA prediction 0.898844353161718 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132985014 chr9:132985014 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3535 0 0 0 0 2 NCS1 chr9:132984929 3'AG 132984929 Downstream 86bp 3450 chr9 132985014 132985014 1 + G T LUAD 132985014 + 132984994 132985034 41 GTGGATGCCATTTACCAGATGGTGGTGAGAAGCCGGGTCTC GTGGATGCCATTTACCAGATTGTGGTGAGAAGCCGGGTCTC Direct Loss 0.949422176580859 0 NA NA prediction 0.898844353161718 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132985014 chr9:132985014 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3535 0 0 0 0 2 NCS1 chr9:132985017 5'GT 132985017 Upstream 4bp 3451 chr22 33245467 33245467 1 + G A BRCA 33245467 + 33245447 33245487 41 GCCAAGGTGGTGGGGAAGAAGCTGGTAAAGGAGGGGCCCTT GCCAAGGTGGTGGGGAAGAAACTGGTAAAGGAGGGGCCCTT Direct Loss 0.949414704654248 0 NA NA prediction 0.898829409308496 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33245467 chr22:33245467 synonymous SNV . 0 21 hm7G_associated_SNPs_3536 0 0 1 0 2 TIMP3 chr22:33245439 3'AG 33245439 Downstream 29bp 3452 chr22 33245467 33245467 1 + G A BRCA 33245467 + 33245447 33245487 41 GCCAAGGTGGTGGGGAAGAAGCTGGTAAAGGAGGGGCCCTT GCCAAGGTGGTGGGGAAGAAACTGGTAAAGGAGGGGCCCTT Direct Loss 0.949414704654248 0 NA NA prediction 0.898829409308496 Functional Loss - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33245467 chr22:33245467 synonymous SNV . 0 21 hm7G_associated_SNPs_3536 0 0 1 0 2 TIMP3 chr22:33245521 5'GT 33245521 Upstream 55bp 3453 chr12 7069291 7069291 1 + G T GBM 7069291 + 7069271 7069311 41 ATCCAGAAGACCATCCAGATGGTGCGGGCGCAGCGCTCGGG ATCCAGAAGACCATCCAGATTGTGCGGGCGCAGCGCTCGGG Direct Loss 0.949411102129508 0 NA NA prediction 0.898822204259017 Functional Loss - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7069291 chr12:7069291 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_3537 0 0 0 0 1 PTPN6 chr12:7069251 3'AG 7069251 Downstream 41bp 3454 chr12 22218129 22218129 1 + G T STAD 22218129 + 22218109 22218149 41 CTGCTGATGCCTGTTCTACTGCCCAGAAGGCTGTTGGATAC CTGCTGATGCCTGTTCTACTTCCCAGAAGGCTGTTGGATAC Direct Loss 0.94940602103749 0 NA NA prediction 0.898812042074981 Functional Loss - CMAS ENSG00000111726 CDS Human protein_coding chr12:22218129 chr12:22218129 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_3538 0 0 1 0 1 CMAS chr12:22218055 3'AG 22218055 Downstream 75bp 3455 chr8 41394712 41394712 1 + G T UCEC 41394712 + 41394692 41394732 41 TTAATAGGAAGAAAATCTCAGGAGAGCCAAAAGGGAGGACC TTAATAGGAAGAAAATCTCATGAGAGCCAAAAGGGAGGACC Direct Loss 0.949394308821779 0 NA NA prediction 0.898788617643558 Functional Loss - GINS4 ENSG00000147536 CDS Human protein_coding chr8:41394712 chr8:41394712 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_3541 0 0 1 0 1 GINS4 chr8:41394699 3'AG 41394699 Downstream 14bp 3456 chr17 18002385 18002385 1 + G A LUAD 18002385 + 18002365 18002405 41 CTGGAATCATTGAAGGCGCAGCCCAAGGTGGGAGGCAGGGC CTGGAATCATTGAAGGCGCAACCCAAGGTGGGAGGCAGGGC Direct Loss 0.94939060157646 0 NA NA prediction 0.89878120315292 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18002385 chr17:18002385 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3542 0 0 1 0 3 DRG2 chr17:18002331 3'AG 18002331 Downstream 55bp 3457 chr17 18002385 18002385 1 + G A LUAD 18002385 + 18002365 18002405 41 CTGGAATCATTGAAGGCGCAGCCCAAGGTGGGAGGCAGGGC CTGGAATCATTGAAGGCGCAACCCAAGGTGGGAGGCAGGGC Direct Loss 0.94939060157646 0 NA NA prediction 0.89878120315292 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18002385 chr17:18002385 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3542 0 0 1 0 3 DRG2 chr17:18002391 5'GT 18002391 Upstream 7bp 3458 chr17 18002385 18002385 1 + G A LUAD 18002385 + 18002365 18002405 41 CTGGAATCATTGAAGGCGCAGCCCAAGGTGGGAGGCAGGGC CTGGAATCATTGAAGGCGCAACCCAAGGTGGGAGGCAGGGC Direct Loss 0.94939060157646 0 NA NA prediction 0.89878120315292 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18002385 chr17:18002385 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3542 0 0 1 0 3 DRG2 chr17:18002407 5'GT 18002407 Upstream 23bp 3459 chr17 6350821 6350821 1 + G A SKCM 6350821 + 6350801 6350841 41 CAAAGTGGCACCAAGTGGCTGGTGGAGACCCAGGTGAAGGC CAAAGTGGCACCAAGTGGCTAGTGGAGACCCAGGTGAAGGC Direct Loss 0.949390466813129 0 NA NA prediction 0.898780933626258 Functional Loss - PIMREG ENSG00000129195 CDS Human protein_coding chr17:6350821 chr17:6350821 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_3543 0 0 0 0 1 PIMREG chr17:6350783 3'AG 6350783 Downstream 39bp 3460 chr12 22814042 22814042 1 + G T LIHC 22814042 + 22814022 22814062 41 CAGATTCTCCAGGAAGAGATGACTTGGATGAAGGAGATTCT CAGATTCTCCAGGAAGAGATTACTTGGATGAAGGAGATTCT Direct Loss 0.949390262588748 0 NA NA prediction 0.898780525177497 Functional Loss - ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22814042 chr12:22814042 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3544 0 0 1 0 2 ETNK1 chr12:22813997 3'AG 22813997 Downstream 46bp 3461 chr12 22814042 22814042 1 + G T LIHC 22814042 + 22814022 22814062 41 CAGATTCTCCAGGAAGAGATGACTTGGATGAAGGAGATTCT CAGATTCTCCAGGAAGAGATTACTTGGATGAAGGAGATTCT Direct Loss 0.949390262588748 0 NA NA prediction 0.898780525177497 Functional Loss - ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22814042 chr12:22814042 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3544 0 0 1 0 2 ETNK1 chr12:22814139 5'GT 22814139 Upstream 98bp 3462 chr6 150464589 150464589 1 + G A GBM 150464589 + 150464569 150464609 41 CTTCGGAAGCGGCTGGTGCTGGAGGAATGGATCGTGGAGCA CTTCGGAAGCGGCTGGTGCTAGAGGAATGGATCGTGGAGCA Direct Loss 0.949385535855102 0 NA NA prediction 0.898771071710204 Functional Loss - PPP1R14C ENSG00000198729 CDS Human protein_coding chr6:150464589 chr6:150464589 synonymous SNV . 0 21 hm7G_associated_SNPs_3545 0 0 1 0 1 PPP1R14C chr6:150464634 5'GT 150464634 Upstream 46bp 3463 chr19 33465052 33465052 1 + G A rs148951579 33465052 + 33465032 33465072 41 CTACAGAAGTTTACTGTGCTGGACCTTGGAATGGTGCTGCT CTACAGAAGTTTACTGTGCTAGACCTTGGAATGGTGCTGCT Direct Loss 0.949373631571896 0 NA NA prediction 0.898747263143792 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465052 chr19:33465052 synonymous SNV . 0 21 hm7G_associated_SNPs_3547 0 0 1 0 2 FAAP24 chr19:33464966 3'AG 33464966 Downstream 87bp 3464 chr19 33465052 33465052 1 + G A rs148951579 33465052 + 33465032 33465072 41 CTACAGAAGTTTACTGTGCTGGACCTTGGAATGGTGCTGCT CTACAGAAGTTTACTGTGCTAGACCTTGGAATGGTGCTGCT Direct Loss 0.949373631571896 0 NA NA prediction 0.898747263143792 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465052 chr19:33465052 synonymous SNV . 0 21 hm7G_associated_SNPs_3547 0 0 1 0 2 FAAP24 chr19:33465118 5'GT 33465118 Upstream 67bp 3465 chr2 232576100 232576100 1 + G A LUAD 232576100 + 232576080 232576120 41 TTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAAC TTGTGGAAGAGGCAGAAAATAGAAGAGACGCCCCTGCTAAC Direct Loss 0.949357139031431 0 NA NA prediction 0.898714278062863 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576100 chr2:232576100 stopgain 1.000 2 21 hm7G_associated_SNPs_3549 0 0 1 0 2 PTMA chr2:232576058 3'AG 232576058 Downstream 43bp 3466 chr2 232576100 232576100 1 + G A LUAD 232576100 + 232576080 232576120 41 TTGTGGAAGAGGCAGAAAATGGAAGAGACGCCCCTGCTAAC TTGTGGAAGAGGCAGAAAATAGAAGAGACGCCCCTGCTAAC Direct Loss 0.949357139031431 0 NA NA prediction 0.898714278062863 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576100 chr2:232576100 stopgain 1.000 2 21 hm7G_associated_SNPs_3549 0 0 1 0 2 PTMA chr2:232576129 5'GT 232576129 Upstream 30bp 3467 chr17 33477122 33477122 1 + G T UCEC 33477122 + 33477102 33477142 41 TATCGGCGATGCCAGGCACTGGAGCACCTGGGGAAGCTGGA TATCGGCGATGCCAGGCACTTGAGCACCTGGGGAAGCTGGA Direct Loss 0.949355938902806 0 NA NA prediction 0.898711877805612 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33477122 chr17:33477122 synonymous SNV . 0 21 hm7G_associated_SNPs_3550 0 0 0 0 1 UNC45B chr17:33477067 3'AG 33477067 Downstream 56bp 3468 chr2 219559278 219559278 1 + G T OV 219559278 + 219559258 219559298 41 CCTGTCTATTGGGACAGCTTGGTCAGCAAGGGGTGACCTTT CCTGTCTATTGGGACAGCTTTGTCAGCAAGGGGTGACCTTT Direct Loss 0.949354616380158 0 NA NA prediction 0.898709232760316 Functional Loss - STK36 ENSG00000163482 CDS Human protein_coding chr2:219559278 chr2:219559278 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_3551 0 0 1 0 1 STK36 chr2:219559358 5'GT 219559358 Upstream 81bp 3469 chr12 27628591 27628591 1 + G T UCEC 27628591 + 27628571 27628611 41 AGGTGAAAGAACTTGGAGCTGATTACATAGACGGAACGGAG AGGTGAAAGAACTTGGAGCTTATTACATAGACGGAACGGAG Direct Loss 0.949350557866947 0 NA NA prediction 0.898701115733895 Functional Loss - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27628591 chr12:27628591 nonsynonymous SNV 0.334 3 21 hm7G_associated_SNPs_3552 0 0 0 0 2 SMCO2 chr12:27628515 3'AG 27628515 Downstream 77bp 3470 chr12 27628591 27628591 1 + G T UCEC 27628591 + 27628571 27628611 41 AGGTGAAAGAACTTGGAGCTGATTACATAGACGGAACGGAG AGGTGAAAGAACTTGGAGCTTATTACATAGACGGAACGGAG Direct Loss 0.949350557866947 0 NA NA prediction 0.898701115733895 Functional Loss - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27628591 chr12:27628591 nonsynonymous SNV 0.334 3 21 hm7G_associated_SNPs_3552 0 0 0 0 2 SMCO2 chr12:27628664 5'GT 27628664 Upstream 74bp 3471 chr1 32696724 32696724 1 + G T SARC 32696724 + 32696704 32696744 41 ATCTTTTTCCAGCTACAGCAGCGGCGGCGAAGATGGTTACG ATCTTTTTCCAGCTACAGCATCGGCGGCGAAGATGGTTACG Direct Loss 0.949343917754042 0 NA NA prediction 0.898687835508084 Functional Loss - EIF3I ENSG00000084623 CDS Human protein_coding chr1:32696724 chr1:32696724 nonsynonymous SNV 0.719 4 21 hm7G_associated_SNPs_3553 0 0 1 0 1 EIF3I chr1:32696716 3'AG 32696716 Downstream 9bp 3472 chr2 85818940 85818940 1 + G C BLCA 85818940 + 85818920 85818960 41 AAGGTCCTGGAGCGTGGTGTGAAGCTGGCCGAACTGCAGCA AAGGTCCTGGAGCGTGGTGTCAAGCTGGCCGAACTGCAGCA Direct Loss 0.949324203588292 0 NA NA prediction 0.898648407176584 Functional Loss - VAMP5 ENSG00000168899 CDS Human protein_coding chr2:85818940 chr2:85818940 synonymous SNV . 0 21 hm7G_associated_SNPs_3555 0 0 0 0 2 VAMP5 chr2:85818848 3'AG 85818848 Downstream 93bp 3473 chr2 85818940 85818940 1 + G C BLCA 85818940 + 85818920 85818960 41 AAGGTCCTGGAGCGTGGTGTGAAGCTGGCCGAACTGCAGCA AAGGTCCTGGAGCGTGGTGTCAAGCTGGCCGAACTGCAGCA Direct Loss 0.949324203588292 0 NA NA prediction 0.898648407176584 Functional Loss - VAMP5 ENSG00000168899 CDS Human protein_coding chr2:85818940 chr2:85818940 synonymous SNV . 0 21 hm7G_associated_SNPs_3555 0 0 0 0 2 VAMP5 chr2:85818985 5'GT 85818985 Upstream 46bp 3474 chr2 108998265 108998265 1 + G A SKCM 108998265 + 108998245 108998285 41 AATTAATACAAAATGAAGGTGATGTGGAGAAAAGTAAACGG AATTAATACAAAATGAAGGTAATGTGGAGAAAAGTAAACGG Direct Loss 0.949296226105624 0 NA NA prediction 0.898592452211249 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108998265 chr2:108998265 nonsynonymous SNV 0.068 1 21 hm7G_associated_SNPs_3557 0 0 1 0 2 SULT1C4 chr2:108998218 3'AG 108998218 Downstream 48bp 3475 chr2 108998265 108998265 1 + G A SKCM 108998265 + 108998245 108998285 41 AATTAATACAAAATGAAGGTGATGTGGAGAAAAGTAAACGG AATTAATACAAAATGAAGGTAATGTGGAGAAAAGTAAACGG Direct Loss 0.949296226105624 0 NA NA prediction 0.898592452211249 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108998265 chr2:108998265 nonsynonymous SNV 0.068 1 21 hm7G_associated_SNPs_3557 0 0 1 0 2 SULT1C4 chr2:108998343 5'GT 108998343 Upstream 79bp 3476 chr6 43618120 43618120 1 + G A UCEC 43618120 + 43618100 43618140 41 TATTGTTGGCAGCCTGAACTGCACAGAGTGGAGCCTCTTGC TATTGTTGGCAGCCTGAACTACACAGAGTGGAGCCTCTTGC Direct Loss 0.949280461336448 0 NA NA prediction 0.898560922672897 Functional Loss - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43618120 chr6:43618120 nonsynonymous SNV 0.954 2 21 hm7G_associated_SNPs_3559 0 0 0 0 1 RSPH9 chr6:43618112 3'AG 43618112 Downstream 9bp 3477 chr1 111781407 111781407 1 + G T UCEC 111781407 + 111781387 111781427 41 TACTGGATACATAAGGGAATGCCATCAGAGAAGGTGGTCAT TACTGGATACATAAGGGAATTCCATCAGAGAAGGTGGTCAT Direct Loss 0.94927501779382 0 NA NA prediction 0.898550035587641 Functional Loss - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781407 chr1:111781407 nonsynonymous SNV 0.673 2 21 hm7G_associated_SNPs_3560 0 0 0 0 1 CHI3L2 chr1:111781372 3'AG 111781372 Downstream 36bp 3478 chr1 24861651 24861651 1 + G A CESC 24861651 + 24861631 24861671 41 TGGTTCATGTCTGTGAAAGTGAAACTGAAGAGGAAGAAGAG TGGTTCATGTCTGTGAAAGTAAAACTGAAGAGGAAGAAGAG Direct Loss 0.949269748962708 0 NA NA prediction 0.898539497925417 Functional Loss - RCAN3 ENSG00000117602 CDS Human protein_coding chr1:24861651 chr1:24861651 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3561 0 0 1 0 1 RCAN3 chr1:24861583 3'AG 24861583 Downstream 69bp 3479 chr17 42266673 42266673 1 + G A CESC 42266673 + 42266653 42266693 41 CCCATCCATCAGAGGGTAATGATGAGAAGGCTGAAGAGGCG CCCATCCATCAGAGGGTAATAATGAGAAGGCTGAAGAGGCG Direct Loss 0.949267533237205 0 NA NA prediction 0.898535066474409 Functional Loss - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42266673 chr17:42266673 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3563 0 0 1 0 1 TMUB2 chr17:42266667 3'AG 42266667 Downstream 7bp 3480 chr11 61253294 61253294 1 + G A rs148713373 61253294 + 61253274 61253314 41 TCTTGCAGAAGAAATCGATCGGCGCAAAGGAGGGGAGTGGC TCTTGCAGAAGAAATCGATCAGCGCAAAGGAGGGGAGTGGC Direct Loss 0.949264342387254 0 NA NA prediction 0.898528684774508 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61253294 chr11:61253294 nonsynonymous SNV 0.035 3 21 hm7G_associated_SNPs_3564 0 0 0 0 2 PPP1R32 chr11:61253271 3'AG 61253271 Downstream 24bp 3481 chr11 61253294 61253294 1 + G A rs148713373 61253294 + 61253274 61253314 41 TCTTGCAGAAGAAATCGATCGGCGCAAAGGAGGGGAGTGGC TCTTGCAGAAGAAATCGATCAGCGCAAAGGAGGGGAGTGGC Direct Loss 0.949264342387254 0 NA NA prediction 0.898528684774508 Functional Loss - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61253294 chr11:61253294 nonsynonymous SNV 0.035 3 21 hm7G_associated_SNPs_3564 0 0 0 0 2 PPP1R32 chr11:61253383 5'GT 61253383 Upstream 90bp 3482 chr15 41793734 41793734 1 + G A LUSC 41793734 + 41793714 41793754 41 TTTCAAGAAGCGCTACGCCTGGGTGCAGCTGGCAGGGCACA TTTCAAGAAGCGCTACGCCTAGGTGCAGCTGGCAGGGCACA Direct Loss 0.949257672655121 0 NA NA prediction 0.898515345310241 Functional Loss - ITPKA ENSG00000137825 CDS Human protein_coding chr15:41793734 chr15:41793734 stopgain 0.999 1 21 hm7G_associated_SNPs_3565 0 0 0 0 2 ITPKA chr15:41793661 3'AG 41793661 Downstream 74bp 3483 chr15 41793734 41793734 1 + G A LUSC 41793734 + 41793714 41793754 41 TTTCAAGAAGCGCTACGCCTGGGTGCAGCTGGCAGGGCACA TTTCAAGAAGCGCTACGCCTAGGTGCAGCTGGCAGGGCACA Direct Loss 0.949257672655121 0 NA NA prediction 0.898515345310241 Functional Loss - ITPKA ENSG00000137825 CDS Human protein_coding chr15:41793734 chr15:41793734 stopgain 0.999 1 21 hm7G_associated_SNPs_3565 0 0 0 0 2 ITPKA chr15:41793757 5'GT 41793757 Upstream 24bp 3484 chrX 118604457 118604457 1 + G A UCEC 118604457 + 118604437 118604477 41 GTTCGCCGCCGCATGATGATGCAGTCAGGGCGCAAAGGAAG GTTCGCCGCCGCATGATGATACAGTCAGGGCGCAAAGGAAG Direct Loss 0.949241009992807 0 NA NA prediction 0.898482019985614 Functional Loss - SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118604457 chrX:118604457 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3567 0 0 1 0 1 SLC25A5 chrX:118604476 5'GT 118604476 Upstream 20bp 3485 chr3 183855975 183855975 1 + G A BRCA 183855975 + 183855955 183855995 41 GCCTGTTTCAGGGCAGTAGTGATGGAGTGGAGGTTCGATAT GCCTGTTTCAGGGCAGTAGTAATGGAGTGGAGGTTCGATAT Direct Loss 0.949233332147698 0 NA NA prediction 0.898466664295396 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855975 chr3:183855975 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_3568 0 0 1 0 2 EIF2B5 chr3:183855954 3'AG 183855954 Downstream 22bp 3486 chr3 183855975 183855975 1 + G A BRCA 183855975 + 183855955 183855995 41 GCCTGTTTCAGGGCAGTAGTGATGGAGTGGAGGTTCGATAT GCCTGTTTCAGGGCAGTAGTAATGGAGTGGAGGTTCGATAT Direct Loss 0.949233332147698 0 NA NA prediction 0.898466664295396 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183855975 chr3:183855975 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_3568 0 0 1 0 2 EIF2B5 chr3:183856034 5'GT 183856034 Upstream 60bp 3487 chr1 109270522 109270522 1 + G A SKCM 109270522 + 109270502 109270542 41 TCCGTGGTGCCGAACTGTATGAAACCAAGGCTGTAGATGGG TCCGTGGTGCCGAACTGTATAAAACCAAGGCTGTAGATGGG Direct Loss 0.949230150066005 0 NA NA prediction 0.898460300132011 Functional Loss - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109270522 chr1:109270522 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3569 0 0 0 0 1 FNDC7 chr1:109270430 3'AG 109270430 Downstream 93bp 3488 chr10 82331232 82331232 1 + G A COAD 82331232 + 82331212 82331252 41 AAGAAGTTCCGGGATGCTCTGGCCAATGAGAAAGCCCGGAT AAGAAGTTCCGGGATGCTCTAGCCAATGAGAAAGCCCGGAT Direct Loss 0.949228039917724 0 NA NA prediction 0.898456079835449 Functional Loss - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331232 chr10:82331232 synonymous SNV . 0 21 hm7G_associated_SNPs_3570 0 0 0 0 1 SH2D4B chr10:82331187 3'AG 82331187 Downstream 46bp 3489 chr6 84650271 84650271 1 + G T LUSC 84650271 + 84650251 84650291 41 TCTTCAATAAAACAGAAGATGATATAATTTGGAGAAGCCAA TCTTCAATAAAACAGAAGATTATATAATTTGGAGAAGCCAA Direct Loss 0.949224226815866 0 NA NA prediction 0.898448453631733 Functional Loss - CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84650271 chr6:84650271 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_3571 0 0 0 0 2 CYB5R4 chr6:84650234 3'AG 84650234 Downstream 38bp 3490 chr6 84650271 84650271 1 + G T LUSC 84650271 + 84650251 84650291 41 TCTTCAATAAAACAGAAGATGATATAATTTGGAGAAGCCAA TCTTCAATAAAACAGAAGATTATATAATTTGGAGAAGCCAA Direct Loss 0.949224226815866 0 NA NA prediction 0.898448453631733 Functional Loss - CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84650271 chr6:84650271 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_3571 0 0 0 0 2 CYB5R4 chr6:84650320 5'GT 84650320 Upstream 50bp 3491 chr17 55187513 55187513 1 + G A UCEC 55187513 + 55187493 55187533 41 ATCATCTGGGAGATCGAGGTGCCAAAGGTAGGGGCGGAGTC ATCATCTGGGAGATCGAGGTACCAAAGGTAGGGGCGGAGTC Direct Loss 0.949217641371461 0 NA NA prediction 0.898435282742921 Functional Loss - AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55187513 chr17:55187513 synonymous SNV . 0 21 hm7G_associated_SNPs_3573 0 0 1 14 1 AKAP1 chr17:55187519 5'GT 55187519 Upstream 7bp 3492 chr15 44085229 44085229 1 + G C STAD 44085229 + 44085209 44085249 41 TGAAAAAGCAGAGCGACTCGGTTAAGGGAAAGCGCCGAGAT TGAAAAAGCAGAGCGACTCGCTTAAGGGAAAGCGCCGAGAT Direct Loss 0.949211257897419 0 NA NA prediction 0.898422515794838 Functional Loss - SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085229 chr15:44085229 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3575 0 0 1 0 2 SERF2 chr15:44085173 3'AG 44085173 Downstream 57bp 3493 chr15 44085229 44085229 1 + G C STAD 44085229 + 44085209 44085249 41 TGAAAAAGCAGAGCGACTCGGTTAAGGGAAAGCGCCGAGAT TGAAAAAGCAGAGCGACTCGCTTAAGGGAAAGCGCCGAGAT Direct Loss 0.949211257897419 0 NA NA prediction 0.898422515794838 Functional Loss - SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085229 chr15:44085229 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3575 0 0 1 0 2 SERF2 chr15:44085281 5'GT 44085281 Upstream 53bp 3494 chr10 35896602 35896602 1 + G A UCEC 35896602 + 35896582 35896622 41 CGAGCAGGAGAGGTTTGTCTGCAACACGCTGCAGCCGGGAT CGAGCAGGAGAGGTTTGTCTACAACACGCTGCAGCCGGGAT Direct Loss 0.949179474952957 0 NA NA prediction 0.898358949905913 Functional Loss - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35896602 chr10:35896602 nonsynonymous SNV 0.186 5 21 hm7G_associated_SNPs_3576 0 0 0 0 1 GJD4 chr10:35896506 3'AG 35896506 Downstream 97bp 3495 chr17 38289356 38289356 1 + G T PAAD 38289356 + 38289336 38289376 41 GGAGCTGGATGAGAAGAGAAGGAAAAGGTGAGGCCAGAGAT GGAGCTGGATGAGAAGAGAATGAAAAGGTGAGGCCAGAGAT Direct Loss 0.949179124938836 0 NA NA prediction 0.898358249877673 Functional Loss - MSL1 ENSG00000188895 CDS Human protein_coding chr17:38289356 chr17:38289356 nonsynonymous SNV 0.990 2 21 hm7G_associated_SNPs_3577 0 0 1 0 2 MSL1 chr17:38289295 3'AG 38289295 Downstream 62bp 3496 chr17 38289356 38289356 1 + G T PAAD 38289356 + 38289336 38289376 41 GGAGCTGGATGAGAAGAGAAGGAAAAGGTGAGGCCAGAGAT GGAGCTGGATGAGAAGAGAATGAAAAGGTGAGGCCAGAGAT Direct Loss 0.949179124938836 0 NA NA prediction 0.898358249877673 Functional Loss - MSL1 ENSG00000188895 CDS Human protein_coding chr17:38289356 chr17:38289356 nonsynonymous SNV 0.990 2 21 hm7G_associated_SNPs_3577 0 0 1 0 2 MSL1 chr17:38289362 5'GT 38289362 Upstream 7bp 3497 chr10 27012990 27012990 1 + G C BLCA 27012990 + 27012970 27013010 41 AAAATGAGAATGAAAGATTTGCACACTACCTTGAGAAGACA AAAATGAGAATGAAAGATTTCCACACTACCTTGAGAAGACA Direct Loss 0.949173460978645 0 NA NA prediction 0.89834692195729 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:27012990 chr10:27012990 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3579 0 0 1 0 3 PDSS1 chr10:27012943 3'AG 27012943 Downstream 48bp 3498 chr10 27012990 27012990 1 + G C BLCA 27012990 + 27012970 27013010 41 AAAATGAGAATGAAAGATTTGCACACTACCTTGAGAAGACA AAAATGAGAATGAAAGATTTCCACACTACCTTGAGAAGACA Direct Loss 0.949173460978645 0 NA NA prediction 0.89834692195729 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:27012990 chr10:27012990 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3579 0 0 1 0 3 PDSS1 chr10:27013052 5'GT 27013052 Upstream 63bp 3499 chr10 27012990 27012990 1 + G C BLCA 27012990 + 27012970 27013010 41 AAAATGAGAATGAAAGATTTGCACACTACCTTGAGAAGACA AAAATGAGAATGAAAGATTTCCACACTACCTTGAGAAGACA Direct Loss 0.949173460978645 0 NA NA prediction 0.89834692195729 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:27012990 chr10:27012990 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3579 0 0 1 0 3 PDSS1 chr10:27013056 5'GT 27013056 Upstream 67bp 3500 chr20 9498791 9498791 1 + G A SKCM 9498791 + 9498771 9498811 41 CCATTTCACTGGCCTCTAGTGATCCGCAGAAGACGGTCACC CCATTTCACTGGCCTCTAGTAATCCGCAGAAGACGGTCACC Direct Loss 0.949171607849515 0 NA NA prediction 0.898343215699029 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9498791 chr20:9498791 nonsynonymous SNV 0.721 3 21 hm7G_associated_SNPs_3580 0 0 0 0 1 LAMP5 chr20:9498875 5'GT 9498875 Upstream 85bp 3501 chr10 13251236 13251236 1 + G T LUSC 13251236 + 13251216 13251256 41 CATTTTTCTAGGAAAAGACTGGTCCAAAGATAGGAGGAGAA CATTTTTCTAGGAAAAGACTTGTCCAAAGATAGGAGGAGAA Direct Loss 0.949169955642101 0 NA NA prediction 0.898339911284201 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13251236 chr10:13251236 nonsynonymous SNV 0.952 4 21 hm7G_associated_SNPs_3581 0 0 1 0 1 MCM10 chr10:13251227 3'AG 13251227 Downstream 10bp 3502 chr2 187370271 187370271 1 + G C ESCA 187370271 + 187370251 187370291 41 AAGAAAAGATTGATAAACTTGAACAAGATATGGAAAGAAGG AAGAAAAGATTGATAAACTTCAACAAGATATGGAAAGAAGG Direct Loss 0.949167213082831 0 NA NA prediction 0.898334426165662 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370271 chr2:187370271 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3582 0 0 1 0 1 ZC3H15 chr2:187370324 5'GT 187370324 Upstream 54bp 3503 chr4 190884260 190884260 1 + G A BLCA 190884260 + 190884240 190884280 41 TTAAACAGGAGAGCCAAATTGAAAGCCGACAGATACTGCAA TTAAACAGGAGAGCCAAATTAAAAGCCGACAGATACTGCAA Direct Loss 0.949158319803233 0 NA NA prediction 0.898316639606465 Functional Loss - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190884260 chr4:190884260 synonymous SNV . 0 21 hm7G_associated_SNPs_3583 0 0 1 0 1 FRG1 chr4:190884248 3'AG 190884248 Downstream 13bp 3504 chr20 17585240 17585240 1 + G A STAD 17585240 + 17585220 17585260 41 TGAAAAGTAAAATGATCTATGCAAGCTCCAAGGATGCAATT TGAAAAGTAAAATGATCTATACAAGCTCCAAGGATGCAATT Direct Loss 0.949155698075445 0 NA NA prediction 0.898311396150891 Functional Loss - DSTN ENSG00000125868 CDS Human protein_coding chr20:17585240 chr20:17585240 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3584 0 0 1 0 2 DSTN chr20:17585200 3'AG 17585200 Downstream 41bp 3505 chr20 17585240 17585240 1 + G A STAD 17585240 + 17585220 17585260 41 TGAAAAGTAAAATGATCTATGCAAGCTCCAAGGATGCAATT TGAAAAGTAAAATGATCTATACAAGCTCCAAGGATGCAATT Direct Loss 0.949155698075445 0 NA NA prediction 0.898311396150891 Functional Loss - DSTN ENSG00000125868 CDS Human protein_coding chr20:17585240 chr20:17585240 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3584 0 0 1 0 2 DSTN chr20:17585276 5'GT 17585276 Upstream 37bp 3506 chr11 66373260 66373260 1 + G A SKCM 66373260 + 66373240 66373280 41 GATGGCCTCACCATCTGGGAGGAGCGAGGCCGGCCCATCGC GATGGCCTCACCATCTGGGAAGAGCGAGGCCGGCCCATCGC Direct Loss 0.949132112041592 0 NA NA prediction 0.898264224083185 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66373260 chr11:66373260 synonymous SNV . 0 21 hm7G_associated_SNPs_3587 0 0 1 0 1 CCS chr11:66373173 3'AG 66373173 Downstream 88bp 3507 chr1 158325810 158325810 1 + G A SKCM 158325810 + 158325790 158325830 41 TGGTATCTCCGAGCAACCCTGGATGTGGCGGCTGGGGAGGC TGGTATCTCCGAGCAACCCTAGATGTGGCGGCTGGGGAGGC Direct Loss 0.949125759312566 0 NA NA prediction 0.898251518625132 Functional Loss - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325810 chr1:158325810 synonymous SNV . 0 21 hm7G_associated_SNPs_3588 0 0 0 0 1 CD1E chr1:158325895 5'GT 158325895 Upstream 86bp 3508 chr9 131456028 131456028 1 + G T SARC 131456028 + 131456008 131456048 41 ACCATTCTGATGCAGGTGCTGATGAGTTAGGAGAGGTCATC ACCATTCTGATGCAGGTGCTTATGAGTTAGGAGAGGTCATC Direct Loss 0.949104711526872 0 NA NA prediction 0.898209423053743 Functional Loss - SET ENSG00000119335 CDS Human protein_coding chr9:131456028 chr9:131456028 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3589 0 0 1 1 1 SET chr9:131456087 5'GT 131456087 Upstream 60bp 3509 chr9 132984984 132984984 1 + G A UCEC 132984984 + 132984964 132985004 41 TACATCACCAGGAATGAGATGCTGGACATTGTGGATGCCAT TACATCACCAGGAATGAGATACTGGACATTGTGGATGCCAT Direct Loss 0.949086517005063 0 NA NA prediction 0.898173034010125 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132984984 chr9:132984984 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_3591 0 0 1 0 2 NCS1 chr9:132984929 3'AG 132984929 Downstream 56bp 3510 chr9 132984984 132984984 1 + G A UCEC 132984984 + 132984964 132985004 41 TACATCACCAGGAATGAGATGCTGGACATTGTGGATGCCAT TACATCACCAGGAATGAGATACTGGACATTGTGGATGCCAT Direct Loss 0.949086517005063 0 NA NA prediction 0.898173034010125 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132984984 chr9:132984984 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_3591 0 0 1 0 2 NCS1 chr9:132985017 5'GT 132985017 Upstream 34bp 3511 chr13 39621231 39621231 1 + G A UCEC 39621231 + 39621211 39621251 41 AAGTATTTGATAAAGACACTGGGGAGTGGTTAGGAGCATGG AAGTATTTGATAAAGACACTAGGGAGTGGTTAGGAGCATGG Direct Loss 0.949085122775852 0 NA NA prediction 0.898170245551704 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39621231 chr13:39621231 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3592 0 0 1 0 2 NHLRC3 chr13:39621177 3'AG 39621177 Downstream 55bp 3512 chr13 39621231 39621231 1 + G A UCEC 39621231 + 39621211 39621251 41 AAGTATTTGATAAAGACACTGGGGAGTGGTTAGGAGCATGG AAGTATTTGATAAAGACACTAGGGAGTGGTTAGGAGCATGG Direct Loss 0.949085122775852 0 NA NA prediction 0.898170245551704 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39621231 chr13:39621231 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3592 0 0 1 0 2 NHLRC3 chr13:39621289 5'GT 39621289 Upstream 59bp 3513 chr17 18284926 18284926 1 + G A STAD 18284926 + 18284906 18284946 41 CTTCTTGACAGCATCGAGCAGCTGCACGAGCGGGTGACCCA CTTCTTGACAGCATCGAGCAACTGCACGAGCGGGTGACCCA Direct Loss 0.949083069275362 0 NA NA prediction 0.898166138550724 Functional Loss - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18284926 chr17:18284926 synonymous SNV . 0 21 hm7G_associated_SNPs_3593 0 0 0 0 1 EVPLL chr17:18284917 3'AG 18284917 Downstream 10bp 3514 chr8 86392938 86392938 1 + G A SKCM 86392938 + 86392918 86392958 41 TTAACTTCAATGGGGAGGGTGAACCCGAAGAACTGATGGTG TTAACTTCAATGGGGAGGGTAAACCCGAAGAACTGATGGTG Direct Loss 0.949066407435172 0 NA NA prediction 0.898132814870344 Functional Loss - CA2 ENSG00000104267 CDS Human protein_coding chr8:86392938 chr8:86392938 nonsynonymous SNV 0.954 2 21 hm7G_associated_SNPs_3595 0 0 1 0 1 CA2 chr8:86392899 3'AG 86392899 Downstream 40bp 3515 chrX 153677073 153677073 1 + G C ESCA 153677073 + 153677053 153677093 41 CTTCGGGAAGAGCTGCGGCAGGAGTGGGAAGCCAAGCAGGA CTTCGGGAAGAGCTGCGGCACGAGTGGGAAGCCAAGCAGGA Direct Loss 0.949061464665239 0 NA NA prediction 0.898122929330479 Functional Loss - FAM50A ENSG00000071859 CDS Human protein_coding chrX:153677073 chrX:153677073 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3597 0 0 1 0 1 FAM50A chrX:153677038 3'AG 153677038 Downstream 36bp 3516 chr19 1270978 1270978 1 + G A THYM 1270978 + 1270958 1270998 41 TTGTTGGAGGGCTGAGTTTTGACACCAATGAGCAGTCGCTG TTGTTGGAGGGCTGAGTTTTAACACCAATGAGCAGTCGCTG Direct Loss 0.949038414404396 0 NA NA prediction 0.898076828808793 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1270978 chr19:1270978 nonsynonymous SNV 0.922 0 21 hm7G_associated_SNPs_3600 0 0 1 0 2 CIRBP chr19:1270927 3'AG 1270927 Downstream 52bp 3517 chr19 1270978 1270978 1 + G A THYM 1270978 + 1270958 1270998 41 TTGTTGGAGGGCTGAGTTTTGACACCAATGAGCAGTCGCTG TTGTTGGAGGGCTGAGTTTTAACACCAATGAGCAGTCGCTG Direct Loss 0.949038414404396 0 NA NA prediction 0.898076828808793 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1270978 chr19:1270978 nonsynonymous SNV 0.922 0 21 hm7G_associated_SNPs_3600 0 0 1 0 2 CIRBP chr19:1271035 5'GT 1271035 Upstream 58bp 3518 chr20 35236192 35236192 1 + G T SARC 35236192 + 35236172 35236212 41 GGTGTCATTTGGGGAGTTTTGCCATTACGAGGGTTCTTGGG GGTGTCATTTGGGGAGTTTTTCCATTACGAGGGTTCTTGGG Direct Loss 0.948999698341603 0 NA NA prediction 0.897999396683206 Functional Loss - C20orf24;TGIF2-C20orf24 ENSG00000101084;ENSG00000259399 CDS Human other chr20:35236192 chr20:35236192 nonsynonymous SNV 0.965 1 21 hm7G_associated_SNPs_3601 0 0 1 2 1 C20orf24;TGIF2-C20orf24 chr20:35236118 3'AG 35236118 Downstream 75bp 3519 chr6 42978916 42978916 1 + G A UCEC 42978916 + 42978896 42978936 41 GACATCAAGAAGGAGAAAGTGCTGCTGCGGAGGAAGTCGGA GACATCAAGAAGGAGAAAGTACTGCTGCGGAGGAAGTCGGA Direct Loss 0.948991121847125 0 NA NA prediction 0.89798224369425 Functional Loss - PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42978916 chr6:42978916 synonymous SNV . 0 21 hm7G_associated_SNPs_3602 0 0 1 0 1 PPP2R5D chr6:42978887 3'AG 42978887 Downstream 30bp 3520 chr16 89922583 89922583 1 + G C rs201073030 89922583 + 89922563 89922603 41 TCCCTGCATGAGAAGATCCTGGAGGAGATCAAGCAGGAGCG TCCCTGCATGAGAAGATCCTCGAGGAGATCAAGCAGGAGCG Direct Loss 0.948976835632156 0 NA NA prediction 0.897953671264312 Functional Loss - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89922583 chr16:89922583 synonymous SNV . 0 21 hm7G_associated_SNPs_3604 0 0 1 0 2 SPIRE2 chr16:89922521 3'AG 89922521 Downstream 63bp 3521 chr16 89922583 89922583 1 + G C rs201073030 89922583 + 89922563 89922603 41 TCCCTGCATGAGAAGATCCTGGAGGAGATCAAGCAGGAGCG TCCCTGCATGAGAAGATCCTCGAGGAGATCAAGCAGGAGCG Direct Loss 0.948976835632156 0 NA NA prediction 0.897953671264312 Functional Loss - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89922583 chr16:89922583 synonymous SNV . 0 21 hm7G_associated_SNPs_3604 0 0 1 0 2 SPIRE2 chr16:89922644 5'GT 89922644 Upstream 62bp 3522 chr12 69096532 69096532 1 + G T COAD 69096532 + 69096512 69096552 41 CCAGAGACAGAATACAGTCTGCATTAGAAGAGGAAAGTGTA CCAGAGACAGAATACAGTCTTCATTAGAAGAGGAAAGTGTA Direct Loss 0.948965456589378 0 NA NA prediction 0.897930913178757 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69096532 chr12:69096532 nonsynonymous SNV 0.966 0 21 hm7G_associated_SNPs_3608 0 0 1 0 2 NUP107 chr12:69096516 3'AG 69096516 Downstream 17bp 3523 chr12 69096532 69096532 1 + G T COAD 69096532 + 69096512 69096552 41 CCAGAGACAGAATACAGTCTGCATTAGAAGAGGAAAGTGTA CCAGAGACAGAATACAGTCTTCATTAGAAGAGGAAAGTGTA Direct Loss 0.948965456589378 0 NA NA prediction 0.897930913178757 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69096532 chr12:69096532 nonsynonymous SNV 0.966 0 21 hm7G_associated_SNPs_3608 0 0 1 0 2 NUP107 chr12:69096564 5'GT 69096564 Upstream 33bp 3524 chr15 41194909 41194909 1 + G T KIRC 41194909 + 41194889 41194929 41 AAGATCGCACGGCACGTGGTGCAGGAAGAGGAAGATGTACA AAGATCGCACGGCACGTGGTTCAGGAAGAGGAAGATGTACA Direct Loss 0.948957895675767 0 NA NA prediction 0.897915791351534 Functional Loss - VPS18 ENSG00000104142 CDS Human protein_coding chr15:41194909 chr15:41194909 synonymous SNV . 0 21 hm7G_associated_SNPs_3609 0 0 0 0 1 VPS18 chr15:41194814 3'AG 41194814 Downstream 96bp 3525 chr22 35779147 35779147 1 + G A UCEC 35779147 + 35779127 35779167 41 AAGGAGGCCACCAAGGAGGTGCACACCCAGGCAGAGAATGC AAGGAGGCCACCAAGGAGGTACACACCCAGGCAGAGAATGC Direct Loss 0.948956626915564 0 NA NA prediction 0.897913253831129 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35779147 chr22:35779147 synonymous SNV . 0 21 hm7G_associated_SNPs_3610 0 0 1 0 2 HMOX1 chr22:35779099 3'AG 35779099 Downstream 49bp 3526 chr22 35779147 35779147 1 + G A UCEC 35779147 + 35779127 35779167 41 AAGGAGGCCACCAAGGAGGTGCACACCCAGGCAGAGAATGC AAGGAGGCCACCAAGGAGGTACACACCCAGGCAGAGAATGC Direct Loss 0.948956626915564 0 NA NA prediction 0.897913253831129 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35779147 chr22:35779147 synonymous SNV . 0 21 hm7G_associated_SNPs_3610 0 0 1 0 2 HMOX1 chr22:35779219 5'GT 35779219 Upstream 73bp 3527 chr9 33265135 33265135 1 + G A PRAD 33265135 + 33265115 33265155 41 GCCGCCCAGCCTGACTGACTGCATTGGCACGGTGGGCATTT GCCGCCCAGCCTGACTGACTACATTGGCACGGTGGGCATTT Direct Loss 0.948938676900791 0 NA NA prediction 0.897877353801583 Functional Loss - CHMP5 ENSG00000086065 CDS Human protein_coding chr9:33265135 chr9:33265135 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3611 0 0 1 0 1 CHMP5 chr9:33265145 5'GT 33265145 Upstream 11bp 3528 chr18 619245 619245 1 + G A UCEC 619245 + 619225 619265 41 TGGGGGAGATAGATGCAGATGAAGAGGTGAAGAAGGCTTTG TGGGGGAGATAGATGCAGATAAAGAGGTGAAGAAGGCTTTG Direct Loss 0.948935139084362 0 NA NA prediction 0.897870278168723 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:619245 chr18:619245 nonsynonymous SNV 0.901 3 21 hm7G_associated_SNPs_3612 0 0 1 0 1 CLUL1 chr18:619213 3'AG 619213 Downstream 33bp 3529 chr6 74191937 74191937 1 + G A BLCA 74191937 + 74191917 74191957 41 TCCGTTTGTCACTGCGCCCTGATAATGCTGACAGCCGGCTC TCCGTTTGTCACTGCGCCCTAATAATGCTGACAGCCGGCTC Direct Loss 0.94892558521966 0 NA NA prediction 0.897851170439321 Functional Loss - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74191937 chr6:74191937 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_3614 0 0 1 0 1 MTO1 chr6:74191967 5'GT 74191967 Upstream 31bp 3530 chr2 75113635 75113635 1 + G T LIHC 75113635 + 75113615 75113655 41 AGGCACGGGCAGCAATGCCTGCTACATGGAGGAGATGCGCA AGGCACGGGCAGCAATGCCTTCTACATGGAGGAGATGCGCA Direct Loss 0.948922245326437 0 NA NA prediction 0.897844490652874 Functional Loss - HK2 ENSG00000159399 CDS Human protein_coding chr2:75113635 chr2:75113635 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3615 0 0 1 0 1 HK2 chr2:75113617 3'AG 75113617 Downstream 19bp 3531 chr15 72958208 72958208 1 + G A SKCM 72958208 + 72958188 72958228 41 GATGTCATCAGGCTGGCCCAGAAGGAGGAGGAGATGAAGGT GATGTCATCAGGCTGGCCCAAAAGGAGGAGGAGATGAAGGT Direct Loss 0.9488963148221 0 NA NA prediction 0.897792629644201 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72958208 chr15:72958208 synonymous SNV . 0 21 hm7G_associated_SNPs_3617 0 0 0 0 2 GOLGA6B chr15:72958123 3'AG 72958123 Downstream 86bp 3532 chr15 72958208 72958208 1 + G A SKCM 72958208 + 72958188 72958228 41 GATGTCATCAGGCTGGCCCAGAAGGAGGAGGAGATGAAGGT GATGTCATCAGGCTGGCCCAAAAGGAGGAGGAGATGAAGGT Direct Loss 0.9488963148221 0 NA NA prediction 0.897792629644201 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72958208 chr15:72958208 synonymous SNV . 0 21 hm7G_associated_SNPs_3617 0 0 0 0 2 GOLGA6B chr15:72958226 5'GT 72958226 Upstream 19bp 3533 chr12 6341850 6341850 1 + G A rs114003206 6341850 + 6341830 6341870 41 ATGATGCTGGTGGGCTTCCTGGGCTGCTGCGGGGCTGTGCA ATGATGCTGGTGGGCTTCCTAGGCTGCTGCGGGGCTGTGCA Direct Loss 0.948873776649571 0 NA NA prediction 0.897747553299142 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6341850 chr12:6341850 synonymous SNV . 0 21 hm7G_associated_SNPs_3620 0 0 1 0 2 CD9 chr12:6341798 3'AG 6341798 Downstream 53bp 3534 chr12 6341850 6341850 1 + G A rs114003206 6341850 + 6341830 6341870 41 ATGATGCTGGTGGGCTTCCTGGGCTGCTGCGGGGCTGTGCA ATGATGCTGGTGGGCTTCCTAGGCTGCTGCGGGGCTGTGCA Direct Loss 0.948873776649571 0 NA NA prediction 0.897747553299142 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6341850 chr12:6341850 synonymous SNV . 0 21 hm7G_associated_SNPs_3620 0 0 1 0 2 CD9 chr12:6341895 5'GT 6341895 Upstream 46bp 3535 chr19 48523048 48523048 1 + G T LUAD 48523048 + 48523028 48523068 41 AAATAATGTGGTCTCTGATTGCATGGAGGATGAAAGCAACA AAATAATGTGGTCTCTGATTTCATGGAGGATGAAAGCAACA Direct Loss 0.948843068970572 0 NA NA prediction 0.897686137941144 Functional Loss - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48523048 chr19:48523048 nonsynonymous SNV 0.036 5 21 hm7G_associated_SNPs_3621 0 0 0 0 1 ELSPBP1 chr19:48523134 5'GT 48523134 Upstream 87bp 3536 chrX 47030564 47030564 1 + G A STAD 47030564 + 47030544 47030584 41 TATCGGACCGAGCAAGGGGAGGAGGAGGAGGAGGAGGAGGA TATCGGACCGAGCAAGGGGAAGAGGAGGAGGAGGAGGAGGA Direct Loss 0.948838437163452 0 NA NA prediction 0.897676874326903 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030564 chrX:47030564 synonymous SNV . 0 21 hm7G_associated_SNPs_3622 0 0 1 0 2 RBM10 chrX:47030509 3'AG 47030509 Downstream 56bp 3537 chrX 47030564 47030564 1 + G A STAD 47030564 + 47030544 47030584 41 TATCGGACCGAGCAAGGGGAGGAGGAGGAGGAGGAGGAGGA TATCGGACCGAGCAAGGGGAAGAGGAGGAGGAGGAGGAGGA Direct Loss 0.948838437163452 0 NA NA prediction 0.897676874326903 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030564 chrX:47030564 synonymous SNV . 0 21 hm7G_associated_SNPs_3622 0 0 1 0 2 RBM10 chrX:47030657 5'GT 47030657 Upstream 94bp 3538 chr7 150748943 150748943 1 + G A HNSC 150748943 + 150748923 150748963 41 TCTTTGAGGCCCTCAACTATGAGACCGTGGAGCAGAAGAAG TCTTTGAGGCCCTCAACTATAAGACCGTGGAGCAGAAGAAG Direct Loss 0.94883482643866 0 NA NA prediction 0.897669652877319 Functional Loss - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150748943 chr7:150748943 nonsynonymous SNV 0.972 2 21 hm7G_associated_SNPs_3623 0 0 1 0 2 ASIC3 chr7:150748897 3'AG 150748897 Downstream 47bp 3539 chr7 150748943 150748943 1 + G A HNSC 150748943 + 150748923 150748963 41 TCTTTGAGGCCCTCAACTATGAGACCGTGGAGCAGAAGAAG TCTTTGAGGCCCTCAACTATAAGACCGTGGAGCAGAAGAAG Direct Loss 0.94883482643866 0 NA NA prediction 0.897669652877319 Functional Loss - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150748943 chr7:150748943 nonsynonymous SNV 0.972 2 21 hm7G_associated_SNPs_3623 0 0 1 0 2 ASIC3 chr7:150748988 5'GT 150748988 Upstream 46bp 3540 chr11 77553649 77553649 1 + G A COAD 77553649 + 77553629 77553669 41 GCCAGGGGGTAGTCGGACTTGGGATTGGAGAGAAACAGGAA GCCAGGGGGTAGTCGGACTTAGGATTGGAGAGAAACAGGAA Direct Loss 0.948824841299546 0 NA NA prediction 0.897649682599092 Functional Loss - AAMDC ENSG00000087884 CDS Human protein_coding chr11:77553649 chr11:77553649 stopgain 1.000 1 21 hm7G_associated_SNPs_3624 0 0 1 0 1 AAMDC chr11:77553674 5'GT 77553674 Upstream 26bp 3541 chr2 108881765 108881765 1 + G A LIHC 108881765 + 108881745 108881785 41 TTTGACAAGGACTACCAGAAGAAGATGGCAGGAAGCACCCT TTTGACAAGGACTACCAGAAAAAGATGGCAGGAAGCACCCT Direct Loss 0.948816067350539 0 NA NA prediction 0.897632134701078 Functional Loss - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108881765 chr2:108881765 synonymous SNV . 0 21 hm7G_associated_SNPs_3625 0 0 0 0 1 SULT1C3 chr2:108881695 3'AG 108881695 Downstream 71bp 3542 chr1 151010106 151010106 1 + G A UCEC 151010106 + 151010086 151010126 41 AGACATGGGGAGTTGGAGCTGAAGGAGGAATGGCAGGATGA AGACATGGGGAGTTGGAGCTAAAGGAGGAATGGCAGGATGA Direct Loss 0.94881351970755 0 NA NA prediction 0.8976270394151 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151010106 chr1:151010106 synonymous SNV . 0 21 hm7G_associated_SNPs_3626 0 0 0 0 2 BNIPL chr1:151010043 3'AG 151010043 Downstream 64bp 3543 chr1 151010106 151010106 1 + G A UCEC 151010106 + 151010086 151010126 41 AGACATGGGGAGTTGGAGCTGAAGGAGGAATGGCAGGATGA AGACATGGGGAGTTGGAGCTAAAGGAGGAATGGCAGGATGA Direct Loss 0.94881351970755 0 NA NA prediction 0.8976270394151 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151010106 chr1:151010106 synonymous SNV . 0 21 hm7G_associated_SNPs_3626 0 0 0 0 2 BNIPL chr1:151010138 5'GT 151010138 Upstream 33bp 3544 chrX 153608306 153608306 1 + G C HNSC 153608306 + 153608286 153608326 41 CCTCCTTTCAATCCAGACTTGAATTCGACTAGAGGGGATGC CCTCCTTTCAATCCAGACTTCAATTCGACTAGAGGGGATGC Direct Loss 0.948812113911503 0 NA NA prediction 0.897624227823006 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153608306 chrX:153608306 nonsynonymous SNV 0.048 1 21 hm7G_associated_SNPs_3627 0 0 1 0 1 EMD chrX:153608302 3'AG 153608302 Downstream 5bp 3545 chr8 118552148 118552148 1 + G A HNSC 118552148 + 118552128 118552168 41 AAACAGAAGAATCAACAGCTGAAACAAATTATGGATCAATT AAACAGAAGAATCAACAGCTAAAACAAATTATGGATCAATT Direct Loss 0.948778359901444 0 NA NA prediction 0.897556719802888 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118552148 chr8:118552148 synonymous SNV . 0 21 hm7G_associated_SNPs_3629 0 0 0 0 1 MED30 chr8:118552122 3'AG 118552122 Downstream 27bp 3546 chr9 75780054 75780054 1 + G A SKCM 75780054 + 75780034 75780074 41 CTTGTATGAAGCAGGAGAAAGGAGAAAGGGGACAGACGTAA CTTGTATGAAGCAGGAGAAAAGAGAAAGGGGACAGACGTAA Direct Loss 0.94877529893688 0 NA NA prediction 0.89755059787376 Functional Loss - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75780054 chr9:75780054 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3630 0 0 1 0 2 ANXA1 chr9:75780032 3'AG 75780032 Downstream 23bp 3547 chr9 75780054 75780054 1 + G A SKCM 75780054 + 75780034 75780074 41 CTTGTATGAAGCAGGAGAAAGGAGAAAGGGGACAGACGTAA CTTGTATGAAGCAGGAGAAAAGAGAAAGGGGACAGACGTAA Direct Loss 0.94877529893688 0 NA NA prediction 0.89755059787376 Functional Loss - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75780054 chr9:75780054 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3630 0 0 1 0 2 ANXA1 chr9:75780125 5'GT 75780125 Upstream 72bp 3548 chr16 25186294 25186294 1 + G T ESCA 25186294 + 25186274 25186314 41 TTCCTGGATGAAATGGAGCTGCTGGAGCAGCTCATGCGGCA TTCCTGGATGAAATGGAGCTTCTGGAGCAGCTCATGCGGCA Direct Loss 0.948775229472615 0 NA NA prediction 0.89755045894523 Functional Loss - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25186294 chr16:25186294 synonymous SNV . 0 21 hm7G_associated_SNPs_3631 0 0 1 0 2 LCMT1 chr16:25186258 3'AG 25186258 Downstream 37bp 3549 chr16 25186294 25186294 1 + G T ESCA 25186294 + 25186274 25186314 41 TTCCTGGATGAAATGGAGCTGCTGGAGCAGCTCATGCGGCA TTCCTGGATGAAATGGAGCTTCTGGAGCAGCTCATGCGGCA Direct Loss 0.948775229472615 0 NA NA prediction 0.89755045894523 Functional Loss - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25186294 chr16:25186294 synonymous SNV . 0 21 hm7G_associated_SNPs_3631 0 0 1 0 2 LCMT1 chr16:25186355 5'GT 25186355 Upstream 62bp 3550 chr7 140380925 140380925 1 + G A UCEC 140380925 + 140380905 140380945 41 GCACGGCTGGGGATCAACATGCTCCTGAAGATGGTGAGCTC GCACGGCTGGGGATCAACATACTCCTGAAGATGGTGAGCTC Direct Loss 0.948757456565939 0 NA NA prediction 0.897514913131878 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380925 chr7:140380925 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_3634 0 0 1 0 2 ADCK2 chr7:140380842 3'AG 140380842 Downstream 84bp 3551 chr7 140380925 140380925 1 + G A UCEC 140380925 + 140380905 140380945 41 GCACGGCTGGGGATCAACATGCTCCTGAAGATGGTGAGCTC GCACGGCTGGGGATCAACATACTCCTGAAGATGGTGAGCTC Direct Loss 0.948757456565939 0 NA NA prediction 0.897514913131878 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380925 chr7:140380925 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_3634 0 0 1 0 2 ADCK2 chr7:140380937 5'GT 140380937 Upstream 13bp 3552 chr11 67377010 67377010 1 + G A STAD 67377010 + 67376990 67377030 41 CGCCATGATCCTCACAAGCTGCTGGAAGGCTGCCTGGTGGG CGCCATGATCCTCACAAGCTACTGGAAGGCTGCCTGGTGGG Direct Loss 0.948752717809501 0 NA NA prediction 0.897505435619002 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67377010 chr11:67377010 synonymous SNV . 0 21 hm7G_associated_SNPs_3635 0 0 1 0 2 NDUFV1 chr11:67376923 3'AG 67376923 Downstream 88bp 3553 chr11 67377010 67377010 1 + G A STAD 67377010 + 67376990 67377030 41 CGCCATGATCCTCACAAGCTGCTGGAAGGCTGCCTGGTGGG CGCCATGATCCTCACAAGCTACTGGAAGGCTGCCTGGTGGG Direct Loss 0.948752717809501 0 NA NA prediction 0.897505435619002 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67377010 chr11:67377010 synonymous SNV . 0 21 hm7G_associated_SNPs_3635 0 0 1 0 2 NDUFV1 chr11:67377106 5'GT 67377106 Upstream 97bp 3554 chr7 100473224 100473224 1 + G A BLCA 100473224 + 100473204 100473244 41 ACCGTGCCATGGGTGACAGTGATGACGAGTACGATCGAAGG ACCGTGCCATGGGTGACAGTAATGACGAGTACGATCGAAGG Direct Loss 0.948751358715806 0 NA NA prediction 0.897502717431612 Functional Loss - SRRT ENSG00000087087 CDS Human protein_coding chr7:100473224 chr7:100473224 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_3636 0 0 1 0 1 SRRT chr7:100473194 3'AG 100473194 Downstream 31bp 3555 chr19 11558391 11558391 1 + G A PRAD 11558391 + 11558371 11558411 41 GAAGAAGAGGCTGAAGAAGAGGAGGAGGAGGAGGATTCCGA GAAGAAGAGGCTGAAGAAGAAGAGGAGGAGGAGGATTCCGA Direct Loss 0.948730481099421 0 NA NA prediction 0.897460962198843 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558391 chr19:11558391 synonymous SNV . 0 21 hm7G_associated_SNPs_3638 0 0 1 0 1 PRKCSH chr19:11558433 5'GT 11558433 Upstream 43bp 3556 chr1 147380085 147380085 1 + G A LUSC 147380085 + 147380065 147380105 41 TCTTCAGGTGGGTGAGAAATGGGCGACTGGAGTTTCCTGGG TCTTCAGGTGGGTGAGAAATAGGCGACTGGAGTTTCCTGGG Direct Loss 0.948717299439344 0 NA NA prediction 0.897434598878688 Functional Loss - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147380085 chr1:147380085 nonsynonymous SNV 0.994 5 21 hm7G_associated_SNPs_3639 0 0 0 0 1 GJA8 chr1:147380072 3'AG 147380072 Downstream 14bp 3557 chr9 130430401 130430401 1 + G A LUSC 130430401 + 130430381 130430421 41 GAGGCACGGGTGAAGGAGGTGCTCCTGGACGAGGACGACGA GAGGCACGGGTGAAGGAGGTACTCCTGGACGAGGACGACGA Direct Loss 0.948704866677154 0 NA NA prediction 0.897409733354308 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130430401 chr9:130430401 synonymous SNV . 0 21 hm7G_associated_SNPs_3640 0 0 1 0 2 STXBP1 chr9:130430359 3'AG 130430359 Downstream 43bp 3558 chr9 130430401 130430401 1 + G A LUSC 130430401 + 130430381 130430421 41 GAGGCACGGGTGAAGGAGGTGCTCCTGGACGAGGACGACGA GAGGCACGGGTGAAGGAGGTACTCCTGGACGAGGACGACGA Direct Loss 0.948704866677154 0 NA NA prediction 0.897409733354308 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130430401 chr9:130430401 synonymous SNV . 0 21 hm7G_associated_SNPs_3640 0 0 1 0 2 STXBP1 chr9:130430466 5'GT 130430466 Upstream 66bp 3559 chr16 29791477 29791477 1 + G A rs143733290 29791477 + 29791457 29791497 41 ACTATGTGGGTGGTCGCAACGGAGACCTGGAGGAGATCTTT ACTATGTGGGTGGTCGCAACAGAGACCTGGAGGAGATCTTT Direct Loss 0.948692678754192 0 NA NA prediction 0.897385357508384 Functional Loss - ZG16 ENSG00000174992 CDS Human protein_coding chr16:29791477 chr16:29791477 nonsynonymous SNV 0.264 4 21 hm7G_associated_SNPs_3641 0 0 0 0 1 ZG16 chr16:29791425 3'AG 29791425 Downstream 53bp 3560 chr16 89611126 89611126 1 + G A LUAD 89611126 + 89611106 89611146 41 GACATTTTGGACGGTGCTCTGATGAGGCCAGGCCGACTGGA GACATTTTGGACGGTGCTCTAATGAGGCCAGGCCGACTGGA Direct Loss 0.948690777872492 0 NA NA prediction 0.897381555744984 Functional Loss - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89611126 chr16:89611126 synonymous SNV . 0 21 hm7G_associated_SNPs_3642 0 0 1 2 2 SPG7 chr16:89611056 3'AG 89611056 Downstream 71bp 3561 chr16 89611126 89611126 1 + G A LUAD 89611126 + 89611106 89611146 41 GACATTTTGGACGGTGCTCTGATGAGGCCAGGCCGACTGGA GACATTTTGGACGGTGCTCTAATGAGGCCAGGCCGACTGGA Direct Loss 0.948690777872492 0 NA NA prediction 0.897381555744984 Functional Loss - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89611126 chr16:89611126 synonymous SNV . 0 21 hm7G_associated_SNPs_3642 0 0 1 2 2 SPG7 chr16:89611180 5'GT 89611180 Upstream 55bp 3562 chr15 41863316 41863316 1 + G T STAD 41863316 + 41863296 41863336 41 TGGCTGTGAAGATGCTGAAAGGTGAGTGGGGGATAGCTGTA TGGCTGTGAAGATGCTGAAATGTGAGTGGGGGATAGCTGTA Direct Loss 0.948690068531619 0 NA NA prediction 0.897380137063238 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41863316 chr15:41863316 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3643 0 0 1 0 2 TYRO3 chr15:41863236 3'AG 41863236 Downstream 81bp 3563 chr15 41863316 41863316 1 + G T STAD 41863316 + 41863296 41863336 41 TGGCTGTGAAGATGCTGAAAGGTGAGTGGGGGATAGCTGTA TGGCTGTGAAGATGCTGAAATGTGAGTGGGGGATAGCTGTA Direct Loss 0.948690068531619 0 NA NA prediction 0.897380137063238 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41863316 chr15:41863316 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3643 0 0 1 0 2 TYRO3 chr15:41863316 5'GT 41863316 Upstream 1bp 3564 chr16 30387496 30387496 1 + G A SKCM 30387496 + 30387476 30387516 41 TGATCGACCAGAACCGTGATGGTATTATAGACAAGGAGGAC TGATCGACCAGAACCGTGATAGTATTATAGACAAGGAGGAC Direct Loss 0.948684511039179 0 NA NA prediction 0.897369022078358 Functional Loss - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387496 chr16:30387496 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3644 0 0 0 0 2 MYLPF chr16:30387466 3'AG 30387466 Downstream 31bp 3565 chr16 30387496 30387496 1 + G A SKCM 30387496 + 30387476 30387516 41 TGATCGACCAGAACCGTGATGGTATTATAGACAAGGAGGAC TGATCGACCAGAACCGTGATAGTATTATAGACAAGGAGGAC Direct Loss 0.948684511039179 0 NA NA prediction 0.897369022078358 Functional Loss - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387496 chr16:30387496 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3644 0 0 0 0 2 MYLPF chr16:30387541 5'GT 30387541 Upstream 46bp 3566 chr12 58120775 58120775 1 + G C rs34772922 58120775 + 58120755 58120795 41 ACCCACAGCAGCAGTTGCGTGATGACGACGTGGGCGAGCTC ACCCACAGCAGCAGTTGCGTCATGACGACGTGGGCGAGCTC Direct Loss 0.948682437496992 0 NA NA prediction 0.897364874993985 Functional Loss - AGAP2 ENSG00000135439 CDS Human antisense chr12:58120775 chr12:58120775 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_3645 0 0 0 0 1 AGAP2-AS1 chr12:58120748 3'AG 58120748 Downstream 28bp 3567 chr2 97464819 97464819 1 + G A LUSC 97464819 + 97464799 97464839 41 TCTCAGTTTAGCCCCTCCCTGATATCAGAGAAGATCCTGCT TCTCAGTTTAGCCCCTCCCTAATATCAGAGAAGATCCTGCT Direct Loss 0.948675502354619 0 NA NA prediction 0.897351004709237 Functional Loss - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97464819 chr2:97464819 synonymous SNV . 0 21 hm7G_associated_SNPs_3646 0 0 0 0 1 CNNM4 chr2:97464794 3'AG 97464794 Downstream 26bp 3568 chr11 125780355 125780355 1 + G A SARC 125780355 + 125780335 125780375 41 TGGATGTTCAAGTGATGTATGCCATTCGAGGGAATCGAAGT TGGATGTTCAAGTGATGTATACCATTCGAGGGAATCGAAGT Direct Loss 0.9486703636771 0 NA NA prediction 0.897340727354201 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125780355 chr11:125780355 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3648 0 0 0 0 2 DDX25 chr11:125780259 3'AG 125780259 Downstream 97bp 3569 chr11 125780355 125780355 1 + G A SARC 125780355 + 125780335 125780375 41 TGGATGTTCAAGTGATGTATGCCATTCGAGGGAATCGAAGT TGGATGTTCAAGTGATGTATACCATTCGAGGGAATCGAAGT Direct Loss 0.9486703636771 0 NA NA prediction 0.897340727354201 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125780355 chr11:125780355 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3648 0 0 0 0 2 DDX25 chr11:125780373 5'GT 125780373 Upstream 19bp 3570 chr2 109092009 109092009 1 + G A COAD 109092009 + 109091989 109092029 41 AGAAAATCTGGAAAAAGAATGCAAAGAAAAGGAGGAGAAAA AGAAAATCTGGAAAAAGAATACAAAGAAAAGGAGGAGAAAA Direct Loss 0.948662228726605 0 NA NA prediction 0.89732445745321 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109092009 chr2:109092009 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_3649 0 0 1 0 2 GCC2 chr2:109091991 3'AG 109091991 Downstream 19bp 3571 chr2 109092009 109092009 1 + G A COAD 109092009 + 109091989 109092029 41 AGAAAATCTGGAAAAAGAATGCAAAGAAAAGGAGGAGAAAA AGAAAATCTGGAAAAAGAATACAAAGAAAAGGAGGAGAAAA Direct Loss 0.948662228726605 0 NA NA prediction 0.89732445745321 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109092009 chr2:109092009 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_3649 0 0 1 0 2 GCC2 chr2:109092091 5'GT 109092091 Upstream 83bp 3572 chr13 41636824 41636824 1 + G A LUAD 41636824 + 41636804 41636844 41 AAAGAAATTCTGTGATTACTGCAAGTGCTGGATAGCAGACA AAAGAAATTCTGTGATTACTACAAGTGCTGGATAGCAGACA Direct Loss 0.948647733052324 0 NA NA prediction 0.897295466104648 Functional Loss - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41636824 chr13:41636824 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3651 0 0 1 0 2 WBP4 chr13:41636780 3'AG 41636780 Downstream 45bp 3573 chr13 41636824 41636824 1 + G A LUAD 41636824 + 41636804 41636844 41 AAAGAAATTCTGTGATTACTGCAAGTGCTGGATAGCAGACA AAAGAAATTCTGTGATTACTACAAGTGCTGGATAGCAGACA Direct Loss 0.948647733052324 0 NA NA prediction 0.897295466104648 Functional Loss - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41636824 chr13:41636824 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3651 0 0 1 0 2 WBP4 chr13:41636852 5'GT 41636852 Upstream 29bp 3574 chr3 193854767 193854767 1 + G A UCEC 193854767 + 193854747 193854787 41 CAGAGCTCGCGGCATTCCAAGCTGGAGAAGGCGGACATTCT CAGAGCTCGCGGCATTCCAAACTGGAGAAGGCGGACATTCT Direct Loss 0.948645944949258 0 NA NA prediction 0.897291889898517 Functional Loss - HES1 ENSG00000114315 CDS Human protein_coding chr3:193854767 chr3:193854767 synonymous SNV . 0 21 hm7G_associated_SNPs_3652 0 0 1 0 2 HES1 chr3:193854750 3'AG 193854750 Downstream 18bp 3575 chr3 193854767 193854767 1 + G A UCEC 193854767 + 193854747 193854787 41 CAGAGCTCGCGGCATTCCAAGCTGGAGAAGGCGGACATTCT CAGAGCTCGCGGCATTCCAAACTGGAGAAGGCGGACATTCT Direct Loss 0.948645944949258 0 NA NA prediction 0.897291889898517 Functional Loss - HES1 ENSG00000114315 CDS Human protein_coding chr3:193854767 chr3:193854767 synonymous SNV . 0 21 hm7G_associated_SNPs_3652 0 0 1 0 2 HES1 chr3:193854837 5'GT 193854837 Upstream 71bp 3576 chr5 54456893 54456893 1 + G A SKCM 54456893 + 54456873 54456913 41 TACTTAGGGCTGAAGGAACTGCACAAAGAGTTTGGACCATC TACTTAGGGCTGAAGGAACTACACAAAGAGTTTGGACCATC Direct Loss 0.948636311834458 0 NA NA prediction 0.897272623668915 Functional Loss - GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456893 chr5:54456893 synonymous SNV . 0 21 hm7G_associated_SNPs_3653 0 0 1 0 1 GPX8 chr5:54456822 3'AG 54456822 Downstream 72bp 3577 chrX 50654065 50654065 1 + G A HNSC 50654065 + 50654045 50654085 41 CGCACCATTGGGGCCACCATGGTGAGGCTGGTGAAGCCCTT CGCACCATTGGGGCCACCATAGTGAGGCTGGTGAAGCCCTT Direct Loss 0.948635613945408 0 NA NA prediction 0.897271227890815 Functional Loss - BMP15 ENSG00000130385 CDS Human protein_coding chrX:50654065 chrX:50654065 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3654 0 0 0 0 1 BMP15 chrX:50654111 5'GT 50654111 Upstream 47bp 3578 chr2 187370533 187370533 1 + G C CESC 187370533 + 187370513 187370553 41 ATGATGATGAGGAAGCAGATGATACCCGCTACACCCAGGGA ATGATGATGAGGAAGCAGATCATACCCGCTACACCCAGGGA Direct Loss 0.948626718353412 0 NA NA prediction 0.897253436706824 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370533 chr2:187370533 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3655 0 0 1 0 2 ZC3H15 chr2:187370467 3'AG 187370467 Downstream 67bp 3579 chr2 187370533 187370533 1 + G C CESC 187370533 + 187370513 187370553 41 ATGATGATGAGGAAGCAGATGATACCCGCTACACCCAGGGA ATGATGATGAGGAAGCAGATCATACCCGCTACACCCAGGGA Direct Loss 0.948626718353412 0 NA NA prediction 0.897253436706824 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370533 chr2:187370533 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3655 0 0 1 0 2 ZC3H15 chr2:187370568 5'GT 187370568 Upstream 36bp 3580 chr4 100208034 100208034 1 - C T LUSC 100208034 - 100208014 100208054 41 CCGGCATCGTGGAGAGTGTTGGAGAAGGGGTGACTACAGTC CCGGCATCGTGGAGAGTGTTAGAGAAGGGGTGACTACAGTC Direct Loss 0.948624673872479 0 NA NA prediction 0.897249347744959 Functional Loss - ADH1A ENSG00000187758 CDS Human protein_coding chr4:100208034 chr4:100208034 nonsynonymous SNV 0.803 4 21 hm7G_associated_SNPs_3656 0 0 0 0 1 ADH1A chr4:100208007 5'GT 100208007 Upstream 28bp 3581 chrX 69458099 69458099 1 + G C LUSC 69458099 + 69458079 69458119 41 CAGCCAGCCATCAACTATCTGCTGAGCCATGGCACTGGCAA CAGCCAGCCATCAACTATCTCCTGAGCCATGGCACTGGCAA Direct Loss 0.948616318640821 0 NA NA prediction 0.897232637281641 Functional Loss - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69458099 chrX:69458099 synonymous SNV . 0 21 hm7G_associated_SNPs_3657 0 0 0 0 1 AWAT1 chrX:69458062 3'AG 69458062 Downstream 38bp 3582 chr7 16815950 16815950 1 + G T SARC 16815950 + 16815930 16815970 41 GCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGA GCATCTTCTTGTTCCTGATTTCTTTAGTGGGTCTGATTGGA Direct Loss 0.948603048520735 0 NA NA prediction 0.89720609704147 Functional Loss - TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16815950 chr7:16815950 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_3659 0 0 1 0 1 TSPAN13 chr7:16816003 5'GT 16816003 Upstream 54bp 3583 chrX 135618380 135618380 1 + G C HNSC 135618380 + 135618360 135618400 41 TCGAGTCAGAGTGAAGGTGTGATGCTGAAAAACGGTGAGCA TCGAGTCAGAGTGAAGGTGTCATGCTGAAAAACGGTGAGCA Direct Loss 0.948596076469718 0 NA NA prediction 0.897192152939436 Functional Loss - VGLL1 ENSG00000102243 CDS Human protein_coding chrX:135618380 chrX:135618380 synonymous SNV . 0 21 hm7G_associated_SNPs_3663 0 0 0 0 1 VGLL1 chrX:135618393 5'GT 135618393 Upstream 14bp 3584 chr9 135933244 135933244 1 + G T LUSC 135933244 + 135933224 135933264 41 GCTGATGGCGGAAAAGAGCAGCTGACGTACGAGTCTGGGGA GCTGATGGCGGAAAAGAGCATCTGACGTACGAGTCTGGGGA Direct Loss 0.948595909714102 0 NA NA prediction 0.897191819428204 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135933244 chr9:135933244 nonsynonymous SNV 0.639 1 21 hm7G_associated_SNPs_3664 0 0 1 0 1 GTF3C5 chr9:135933201 3'AG 135933201 Downstream 44bp 3585 chr12 16052888 16052888 1 + G C HNSC 16052888 + 16052868 16052908 41 ACTGTGTGAGATTTAGTCCTGATGGAGAACTCTATGCCAGT ACTGTGTGAGATTTAGTCCTCATGGAGAACTCTATGCCAGT Direct Loss 0.948595505137436 0 NA NA prediction 0.897191010274871 Functional Loss - STRAP ENSG00000023734 CDS Human protein_coding chr12:16052888 chr12:16052888 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3665 0 0 1 0 2 STRAP chr12:16052838 3'AG 16052838 Downstream 51bp 3586 chr12 16052888 16052888 1 + G C HNSC 16052888 + 16052868 16052908 41 ACTGTGTGAGATTTAGTCCTGATGGAGAACTCTATGCCAGT ACTGTGTGAGATTTAGTCCTCATGGAGAACTCTATGCCAGT Direct Loss 0.948595505137436 0 NA NA prediction 0.897191010274871 Functional Loss - STRAP ENSG00000023734 CDS Human protein_coding chr12:16052888 chr12:16052888 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3665 0 0 1 0 2 STRAP chr12:16052987 5'GT 16052987 Upstream 100bp 3587 chr11 460247 460247 1 + G A rs150683859 460247 + 460227 460267 41 ACGCTTGGCTATGTGACGCTGCTGGAGGAAACACCTCAGGA ACGCTTGGCTATGTGACGCTACTGGAGGAAACACCTCAGGA Direct Loss 0.948593289414592 0 NA NA prediction 0.897186578829184 Functional Loss - PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:460247 chr11:460247 synonymous SNV . 0 21 hm7G_associated_SNPs_3666 0 0 1 0 2 PTDSS2 chr11:460187 3'AG 460187 Downstream 61bp 3588 chr11 460247 460247 1 + G A rs150683859 460247 + 460227 460267 41 ACGCTTGGCTATGTGACGCTGCTGGAGGAAACACCTCAGGA ACGCTTGGCTATGTGACGCTACTGGAGGAAACACCTCAGGA Direct Loss 0.948593289414592 0 NA NA prediction 0.897186578829184 Functional Loss - PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:460247 chr11:460247 synonymous SNV . 0 21 hm7G_associated_SNPs_3666 0 0 1 0 2 PTDSS2 chr11:460288 5'GT 460288 Upstream 42bp 3589 chr1 12089197 12089197 1 + G A SKCM 12089197 + 12089177 12089217 41 AGTGTATCTGCAGCCATCCTGAGTGAGCAGGGGCGGGCGAG AGTGTATCTGCAGCCATCCTAAGTGAGCAGGGGCGGGCGAG Direct Loss 0.948585156867675 0 NA NA prediction 0.89717031373535 Functional Loss - MIIP ENSG00000116691 CDS Human protein_coding chr1:12089197 chr1:12089197 nonsynonymous SNV 0.043 2 21 hm7G_associated_SNPs_3667 0 0 1 0 1 MIIP chr1:12089198 5'GT 12089198 Upstream 2bp 3590 chr7 30961695 30961695 1 + G A SKCM 30961695 + 30961675 30961715 41 CTGCAGCTGGCTGATGGTGTGAACTCGGGCCAGGGCCTGGG CTGCAGCTGGCTGATGGTGTAAACTCGGGCCAGGGCCTGGG Direct Loss 0.948582817328272 0 NA NA prediction 0.897165634656543 Functional Loss - AQP1 ENSG00000240583;ENSG00000250424 CDS Human other chr7:30961695 chr7:30961695 synonymous SNV . 0 21 hm7G_associated_SNPs_3668 0 0 0 0 1 AQP1 chr7:30961681 3'AG 30961681 Downstream 15bp 3591 chr17 4926781 4926781 1 + G A LUSC 4926781 + 4926761 4926801 41 AGGATCATGAGGATGAGAATGAAGAAGGTGGTGAGGTCCCC AGGATCATGAGGATGAGAATAAAGAAGGTGGTGAGGTCCCC Direct Loss 0.948575791165867 0 NA NA prediction 0.897151582331734 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4926781 chr17:4926781 nonsynonymous SNV 0.533 0 21 hm7G_associated_SNPs_3669 0 0 1 0 1 KIF1C chr17:4926763 3'AG 4926763 Downstream 19bp 3592 chr17 43138751 43138751 1 + G A UCEC 43138751 + 43138731 43138771 41 CCGGCACCTCCGCTGCCGCAGATGATGGAAGGGAACGGGAA CCGGCACCTCCGCTGCCGCAAATGATGGAAGGGAACGGGAA Direct Loss 0.948562211983489 0 NA NA prediction 0.897124423966977 Functional Loss - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43138751 chr17:43138751 synonymous SNV . 0 21 hm7G_associated_SNPs_3670 0 0 1 0 1 NMT1 chr17:43138828 5'GT 43138828 Upstream 78bp 3593 chr5 225549 225549 1 + G T LUSC 225549 + 225529 225569 41 TCCAGGGAGGAATCAATGCTGCTCTGGGGAACATGGAGGAG TCCAGGGAGGAATCAATGCTTCTCTGGGGAACATGGAGGAG Direct Loss 0.948555865311889 0 NA NA prediction 0.897111730623777 Functional Loss - SDHA ENSG00000073578 CDS Human protein_coding chr5:225549 chr5:225549 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3671 0 0 0 0 1 SDHA chr5:225534 3'AG 225534 Downstream 16bp 3594 chr19 14569148 14569148 1 + G C LUAD 14569148 + 14569128 14569168 41 GACAATGAGAGGCATGAGGTGCAGCTGGACATGGAACCCCA GACAATGAGAGGCATGAGGTCCAGCTGGACATGGAACCCCA Direct Loss 0.948547099071892 0 NA NA prediction 0.897094198143784 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14569148 chr19:14569148 synonymous SNV . 0 21 hm7G_associated_SNPs_3673 0 0 1 0 1 PKN1 chr19:14569187 5'GT 14569187 Upstream 40bp 3595 chr13 28367727 28367727 1 + G A CESC 28367727 + 28367707 28367747 41 CAGCTCTAACCAGCTGCCCAGCAGCAAGAGGATGCGCACGG CAGCTCTAACCAGCTGCCCAACAGCAAGAGGATGCGCACGG Direct Loss 0.948518882828388 0 NA NA prediction 0.897037765656777 Functional Loss - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367727 chr13:28367727 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3675 0 0 0 0 1 GSX1 chr13:28367703 3'AG 28367703 Downstream 25bp 3596 chr7 43843411 43843411 1 + G T LUAD 43843411 + 43843391 43843431 41 CGAAAGGAAGATCAGTATATGAAAATGACAGTGTGTCTGGA CGAAAGGAAGATCAGTATATTAAAATGACAGTGTGTCTGGA Direct Loss 0.948511437294774 0 NA NA prediction 0.897022874589548 Functional Loss - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43843411 chr7:43843411 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_3676 0 0 1 0 1 BLVRA chr7:43843446 5'GT 43843446 Upstream 36bp 3597 chr21 34655489 34655489 1 + G C LUAD 34655489 + 34655469 34655509 41 AAGTTCGAGGGTTTCTTCCTGATCGGAACAAAGCTGGGGAA AAGTTCGAGGGTTTCTTCCTCATCGGAACAAAGCTGGGGAA Direct Loss 0.948502365703594 0 NA NA prediction 0.897004731407189 Functional Loss - IL10RB ENSG00000243646;ENSG00000249624 CDS Human other chr21:34655489 chr21:34655489 nonsynonymous SNV 0.576 2 21 hm7G_associated_SNPs_3677 0 0 1 0 1 IL10RB chr21:34655399 3'AG 34655399 Downstream 91bp 3598 chr16 55730222 55730222 1 + G A HNSC 55730222 + 55730202 55730242 41 GCTGTTGTGTTTTTCGTCATGCTCCTGGCGCTGGGCCTTGA GCTGTTGTGTTTTTCGTCATACTCCTGGCGCTGGGCCTTGA Direct Loss 0.948501866266032 0 NA NA prediction 0.897003732532064 Functional Loss - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55730222 chr16:55730222 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3678 0 0 0 0 2 SLC6A2 chr16:55730137 3'AG 55730137 Downstream 86bp 3599 chr16 55730222 55730222 1 + G A HNSC 55730222 + 55730202 55730242 41 GCTGTTGTGTTTTTCGTCATGCTCCTGGCGCTGGGCCTTGA GCTGTTGTGTTTTTCGTCATACTCCTGGCGCTGGGCCTTGA Direct Loss 0.948501866266032 0 NA NA prediction 0.897003732532064 Functional Loss - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55730222 chr16:55730222 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3678 0 0 0 0 2 SLC6A2 chr16:55730249 5'GT 55730249 Upstream 28bp 3600 chr10 26507976 26507976 1 + G T LUAD 26507976 + 26507956 26507996 41 TAATTTCATTCTTTAGACCTGCTGCCGGCGTGTGATGGAGA TAATTTCATTCTTTAGACCTTCTGCCGGCGTGTGATGGAGA Direct Loss 0.948500134463188 0 NA NA prediction 0.897000268926376 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26507976 chr10:26507976 synonymous SNV . 0 21 hm7G_associated_SNPs_3679 0 0 0 0 1 GAD2 chr10:26507972 3'AG 26507972 Downstream 5bp 3601 chr5 110092444 110092444 1 + G A UCEC 110092444 + 110092424 110092464 41 CCTTTTTATTCAGCAAGTCTGATTGAAACAGTGCAGGTGAG CCTTTTTATTCAGCAAGTCTAATTGAAACAGTGCAGGTGAG Direct Loss 0.948488597597418 0 NA NA prediction 0.896977195194836 Functional Loss - SLC25A46 ENSG00000164209 CDS Human protein_coding chr5:110092444 chr5:110092444 synonymous SNV . 0 21 hm7G_associated_SNPs_3680 0 0 0 0 2 SLC25A46 chr5:110092402 3'AG 110092402 Downstream 43bp 3602 chr5 110092444 110092444 1 + G A UCEC 110092444 + 110092424 110092464 41 CCTTTTTATTCAGCAAGTCTGATTGAAACAGTGCAGGTGAG CCTTTTTATTCAGCAAGTCTAATTGAAACAGTGCAGGTGAG Direct Loss 0.948488597597418 0 NA NA prediction 0.896977195194836 Functional Loss - SLC25A46 ENSG00000164209 CDS Human protein_coding chr5:110092444 chr5:110092444 synonymous SNV . 0 21 hm7G_associated_SNPs_3680 0 0 0 0 2 SLC25A46 chr5:110092459 5'GT 110092459 Upstream 16bp 3603 chr1 28863318 28863318 1 + G A LIHC 28863318 + 28863298 28863338 41 TGGGCCTTGGAGAGGGTGCTGAGGAGAAGAGCATACCCACC TGGGCCTTGGAGAGGGTGCTAAGGAGAAGAGCATACCCACC Direct Loss 0.948485300463051 0 NA NA prediction 0.896970600926102 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28863318 chr1:28863318 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3681 0 0 1 0 2 RCC1 chr1:28863259 3'AG 28863259 Downstream 60bp 3604 chr1 28863318 28863318 1 + G A LIHC 28863318 + 28863298 28863338 41 TGGGCCTTGGAGAGGGTGCTGAGGAGAAGAGCATACCCACC TGGGCCTTGGAGAGGGTGCTAAGGAGAAGAGCATACCCACC Direct Loss 0.948485300463051 0 NA NA prediction 0.896970600926102 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28863318 chr1:28863318 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3681 0 0 1 0 2 RCC1 chr1:28863411 5'GT 28863411 Upstream 94bp 3605 chr9 4841274 4841274 1 + G T BRCA 4841274 + 4841254 4841294 41 CAGATGGCGAACCGGATTGTGGATTCTGCAAGGAGCATCCT CAGATGGCGAACCGGATTGTTGATTCTGCAAGGAGCATCCT Direct Loss 0.948479951530238 0 NA NA prediction 0.896959903060477 Functional Loss - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4841274 chr9:4841274 synonymous SNV . 0 21 hm7G_associated_SNPs_3682 0 0 1 0 3 RCL1 chr9:4841202 3'AG 4841202 Downstream 73bp 3606 chr9 4841274 4841274 1 + G T BRCA 4841274 + 4841254 4841294 41 CAGATGGCGAACCGGATTGTGGATTCTGCAAGGAGCATCCT CAGATGGCGAACCGGATTGTTGATTCTGCAAGGAGCATCCT Direct Loss 0.948479951530238 0 NA NA prediction 0.896959903060477 Functional Loss - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4841274 chr9:4841274 synonymous SNV . 0 21 hm7G_associated_SNPs_3682 0 0 1 0 3 RCL1 chr9:4841232 3'AG 4841232 Downstream 43bp 3607 chr9 4841274 4841274 1 + G T BRCA 4841274 + 4841254 4841294 41 CAGATGGCGAACCGGATTGTGGATTCTGCAAGGAGCATCCT CAGATGGCGAACCGGATTGTTGATTCTGCAAGGAGCATCCT Direct Loss 0.948479951530238 0 NA NA prediction 0.896959903060477 Functional Loss - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4841274 chr9:4841274 synonymous SNV . 0 21 hm7G_associated_SNPs_3682 0 0 1 0 3 RCL1 chr9:4841357 5'GT 4841357 Upstream 84bp 3608 chr19 12866985 12866985 1 + G C GBM 12866985 + 12866965 12867005 41 TGGCAGTGGACGAGATGTATGATGACCTGGCTGTGCTGGAG TGGCAGTGGACGAGATGTATCATGACCTGGCTGTGCTGGAG Direct Loss 0.94847395503099 0 NA NA prediction 0.896947910061981 Functional Loss - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12866985 chr19:12866985 nonsynonymous SNV 0.988 1 21 hm7G_associated_SNPs_3684 0 0 0 0 1 BEST2 chr19:12866955 3'AG 12866955 Downstream 31bp 3609 chr18 43685253 43685253 1 + G A BLCA 43685253 + 43685233 43685273 41 AGATTTTACATCACCTTTCAGAACGCAACAGGGTCCGGGAC AGATTTTACATCACCTTTCAAAACGCAACAGGGTCCGGGAC Direct Loss 0.948454719087278 0 NA NA prediction 0.896909438174556 Functional Loss - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43685253 chr18:43685253 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_3685 0 0 0 0 2 HAUS1 chr18:43685160 3'AG 43685160 Downstream 94bp 3610 chr18 43685253 43685253 1 + G A BLCA 43685253 + 43685233 43685273 41 AGATTTTACATCACCTTTCAGAACGCAACAGGGTCCGGGAC AGATTTTACATCACCTTTCAAAACGCAACAGGGTCCGGGAC Direct Loss 0.948454719087278 0 NA NA prediction 0.896909438174556 Functional Loss - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43685253 chr18:43685253 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_3685 0 0 0 0 2 HAUS1 chr18:43685334 5'GT 43685334 Upstream 82bp 3611 chr11 63742188 63742188 1 + G C CESC 63742188 + 63742168 63742208 41 CCGCTGCTGCTGCGGGGCTTGACAGGCTCGGCCCGGCGGCT CCGCTGCTGCTGCGGGGCTTCACAGGCTCGGCCCGGCGGCT Direct Loss 0.948453963437452 0 NA NA prediction 0.896907926874904 Functional Loss - COX8A ENSG00000176340;ENSG00000256100 CDS Human other chr11:63742188 chr11:63742188 nonsynonymous SNV 0.905 3 21 hm7G_associated_SNPs_3686 0 0 1 0 1 COX8A chr11:63742266 5'GT 63742266 Upstream 79bp 3612 chr19 39689855 39689855 1 + G A COAD 39689855 + 39689835 39689875 41 GACCTTCTGGCCGAGGGCCTGTGGGAGGAGCTGCTGGATGA GACCTTCTGGCCGAGGGCCTATGGGAGGAGCTGCTGGATGA Direct Loss 0.948452040850461 0 NA NA prediction 0.896904081700922 Functional Loss - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39689855 chr19:39689855 synonymous SNV . 0 21 hm7G_associated_SNPs_3687 0 0 0 0 2 NCCRP1 chr19:39689810 3'AG 39689810 Downstream 46bp 3613 chr19 39689855 39689855 1 + G A COAD 39689855 + 39689835 39689875 41 GACCTTCTGGCCGAGGGCCTGTGGGAGGAGCTGCTGGATGA GACCTTCTGGCCGAGGGCCTATGGGAGGAGCTGCTGGATGA Direct Loss 0.948452040850461 0 NA NA prediction 0.896904081700922 Functional Loss - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39689855 chr19:39689855 synonymous SNV . 0 21 hm7G_associated_SNPs_3687 0 0 0 0 2 NCCRP1 chr19:39689905 5'GT 39689905 Upstream 51bp 3614 chr6 131900354 131900354 1 + G A rs571619062 131900354 + 131900334 131900374 41 TCTGTGGGAAAAGCAAGCGAGCAGCTGGCTGGCAAGGTGGC TCTGTGGGAAAAGCAAGCGAACAGCTGGCTGGCAAGGTGGC Direct Loss 0.948439247891412 0 NA NA prediction 0.896878495782824 Functional Loss - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131900354 chr6:131900354 synonymous SNV . 0 21 hm7G_associated_SNPs_3688 0 0 0 0 1 ARG1 chr6:131900425 5'GT 131900425 Upstream 72bp 3615 chr7 123599635 123599635 1 + G A UCEC 123599635 + 123599615 123599655 41 AATGTGTAGCCAAGTGCTTTGCCAGGAGCAAGGAGTGTGTA AATGTGTAGCCAAGTGCTTTACCAGGAGCAAGGAGTGTGTA Direct Loss 0.948417267900747 0 NA NA prediction 0.896834535801494 Functional Loss - SPAM1 ENSG00000106304 CDS Human protein_coding chr7:123599635 chr7:123599635 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_3690 0 0 0 0 1 SPAM1 chr7:123599538 3'AG 123599538 Downstream 98bp 3616 chr12 58140501 58140501 1 + G T HNSC 58140501 + 58140481 58140521 41 AAGATTATGATTTCTGCACTGCAGTGAGTGTGTTGGGGGTG AAGATTATGATTTCTGCACTTCAGTGAGTGTGTTGGGGGTG Direct Loss 0.948403269759386 0 NA NA prediction 0.896806539518771 Functional Loss - TSPAN31 ENSG00000135452 CDS Human protein_coding chr12:58140501 chr12:58140501 nonsynonymous SNV 0.979 2 21 hm7G_associated_SNPs_3691 0 0 1 0 1 TSPAN31 chr12:58140503 5'GT 58140503 Upstream 3bp 3617 chr9 100745867 100745867 1 + G T SARC 100745867 + 100745847 100745887 41 AAGAGGAGGATCCACCTGGAGCTGAGGAACCGGACCCCGGC AAGAGGAGGATCCACCTGGATCTGAGGAACCGGACCCCGGC Direct Loss 0.94839900694204 0 NA NA prediction 0.896798013884081 Functional Loss - ANP32B ENSG00000136938 CDS Human protein_coding chr9:100745867 chr9:100745867 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_3693 0 0 1 0 1 ANP32B chr9:100745891 5'GT 100745891 Upstream 25bp 3618 chr1 75614339 75614339 1 + G A SKCM 75614339 + 75614319 75614359 41 ACTCCAGAAATTGGCAGAAAGGACAGGCTTGAGCAGACGTG ACTCCAGAAATTGGCAGAAAAGACAGGCTTGAGCAGACGTG Direct Loss 0.948395799347427 0 NA NA prediction 0.896791598694854 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75614339 chr1:75614339 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3694 0 0 0 0 2 LHX8 chr1:75614272 3'AG 75614272 Downstream 68bp 3619 chr1 75614339 75614339 1 + G A SKCM 75614339 + 75614319 75614359 41 ACTCCAGAAATTGGCAGAAAGGACAGGCTTGAGCAGACGTG ACTCCAGAAATTGGCAGAAAAGACAGGCTTGAGCAGACGTG Direct Loss 0.948395799347427 0 NA NA prediction 0.896791598694854 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75614339 chr1:75614339 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3694 0 0 0 0 2 LHX8 chr1:75614367 5'GT 75614367 Upstream 29bp 3620 chrX 71416737 71416737 1 + G C CESC 71416737 + 71416717 71416757 41 TGGCCGCACAGTATAGTGAAGATAAAGCCAGGCAAGGGGTA TGGCCGCACAGTATAGTGAACATAAAGCCAGGCAAGGGGTA Direct Loss 0.948384152520833 0 NA NA prediction 0.896768305041667 Functional Loss - PIN4 ENSG00000102309 CDS Human protein_coding chrX:71416737 chrX:71416737 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3695 0 0 1 0 1 PIN4 chrX:71416754 5'GT 71416754 Upstream 18bp 3621 chr16 83940597 83940597 1 + G A BRCA 83940597 + 83940577 83940617 41 TCTTCTCCTTTTCAGGAAATGAATGGGGTGCTGAAAGGAAT TCTTCTCCTTTTCAGGAAATAAATGGGGTGCTGAAAGGAAT Direct Loss 0.948376283765581 0 NA NA prediction 0.896752567531162 Functional Loss - MLYCD ENSG00000103150 CDS Human protein_coding chr16:83940597 chr16:83940597 nonsynonymous SNV 0.581 3 21 hm7G_associated_SNPs_3696 0 0 1 0 1 MLYCD chr16:83940592 3'AG 83940592 Downstream 6bp 3622 chr2 131100742 131100742 1 + G A rs547873913 131100742 + 131100722 131100762 41 CGCTCAGCCCAGGAGAGGAAGGAGCGGCTGCGGCGCGCGCT CGCTCAGCCCAGGAGAGGAAAGAGCGGCTGCGGCGCGCGCT Direct Loss 0.948371023962181 0 NA NA prediction 0.896742047924362 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131100742 chr2:131100742 synonymous SNV . 0 21 hm7G_associated_SNPs_3697 0 0 1 0 2 IMP4 chr2:131100659 3'AG 131100659 Downstream 84bp 3623 chr2 131100742 131100742 1 + G A rs547873913 131100742 + 131100722 131100762 41 CGCTCAGCCCAGGAGAGGAAGGAGCGGCTGCGGCGCGCGCT CGCTCAGCCCAGGAGAGGAAAGAGCGGCTGCGGCGCGCGCT Direct Loss 0.948371023962181 0 NA NA prediction 0.896742047924362 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131100742 chr2:131100742 synonymous SNV . 0 21 hm7G_associated_SNPs_3697 0 0 1 0 2 IMP4 chr2:131100767 5'GT 131100767 Upstream 26bp 3624 chr11 561798 561798 1 + G A rs143459467 561798 + 561778 561818 41 GGACTGGCGGCCATGGAGCTGAAGGTGTGGGTGGATGGCAT GGACTGGCGGCCATGGAGCTAAAGGTGTGGGTGGATGGCAT Direct Loss 0.948352098408883 0 NA NA prediction 0.896704196817766 Functional Loss - RASSF7 ENSG00000099849 CDS Human protein_coding chr11:561798 chr11:561798 synonymous SNV . 0 21 hm7G_associated_SNPs_3699 0 0 1 0 2 RASSF7 chr11:561762 3'AG 561762 Downstream 37bp 3625 chr11 561798 561798 1 + G A rs143459467 561798 + 561778 561818 41 GGACTGGCGGCCATGGAGCTGAAGGTGTGGGTGGATGGCAT GGACTGGCGGCCATGGAGCTAAAGGTGTGGGTGGATGGCAT Direct Loss 0.948352098408883 0 NA NA prediction 0.896704196817766 Functional Loss - RASSF7 ENSG00000099849 CDS Human protein_coding chr11:561798 chr11:561798 synonymous SNV . 0 21 hm7G_associated_SNPs_3699 0 0 1 0 2 RASSF7 chr11:561892 5'GT 561892 Upstream 95bp 3626 chr12 58002908 58002908 1 + G C BLCA 58002908 + 58002888 58002928 41 ACCCGGGTGCAAGAGGAGCTGAGAGCGAAGGGTATCACAGA ACCCGGGTGCAAGAGGAGCTCAGAGCGAAGGGTATCACAGA Direct Loss 0.948350563328758 0 NA NA prediction 0.896701126657517 Functional Loss - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002908 chr12:58002908 synonymous SNV . 0 21 hm7G_associated_SNPs_3700 0 0 1 0 1 DTX3 chr12:58002860 3'AG 58002860 Downstream 49bp 3627 chr5 1814522 1814522 1 + G A UCEC 1814522 + 1814502 1814542 41 AGGTGGAGACTCGGGTGATAGCGTGCGATGGCGGCGGGGGA AGGTGGAGACTCGGGTGATAACGTGCGATGGCGGCGGGGGA Direct Loss 0.948344711520034 0 NA NA prediction 0.896689423040068 Functional Loss - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1814522 chr5:1814522 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_3701 0 0 1 0 2 NDUFS6 chr5:1814453 3'AG 1814453 Downstream 70bp 3628 chr5 1814522 1814522 1 + G A UCEC 1814522 + 1814502 1814542 41 AGGTGGAGACTCGGGTGATAGCGTGCGATGGCGGCGGGGGA AGGTGGAGACTCGGGTGATAACGTGCGATGGCGGCGGGGGA Direct Loss 0.948344711520034 0 NA NA prediction 0.896689423040068 Functional Loss - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1814522 chr5:1814522 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_3701 0 0 1 0 2 NDUFS6 chr5:1814575 5'GT 1814575 Upstream 54bp 3629 chr2 219677693 219677693 1 + G A UCEC 219677693 + 219677673 219677713 41 GAAGATATGGAGGCCCAACTGCAGGCAGCAGGGCCAGATGG GAAGATATGGAGGCCCAACTACAGGCAGCAGGGCCAGATGG Direct Loss 0.948311737824388 0 NA NA prediction 0.896623475648775 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677693 chr2:219677693 synonymous SNV . 0 21 hm7G_associated_SNPs_3705 0 0 1 0 1 CYP27A1 chr2:219677647 3'AG 219677647 Downstream 47bp 3630 chr2 201683504 201683504 1 + G A LGG 201683504 + 201683484 201683524 41 TTATATGTCAAGGAGGAGATGAAAAAAAACAACATCCCAGA TTATATGTCAAGGAGGAGATAAAAAAAAACAACATCCCAGA Direct Loss 0.948308440437144 0 NA NA prediction 0.896616880874287 Functional Loss - BZW1 ENSG00000082153 CDS Human protein_coding chr2:201683504 chr2:201683504 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3706 0 0 0 0 1 BZW1 chr2:201683478 3'AG 201683478 Downstream 27bp 3631 chr17 37790294 37790294 1 + G T UCEC 37790294 + 37790274 37790314 41 ATGATGAAGAAGAGGAAGAAGAAGAGGACAGCCAGGCTGAA ATGATGAAGAAGAGGAAGAATAAGAGGACAGCCAGGCTGAA Direct Loss 0.948293575982896 0 NA NA prediction 0.896587151965793 Functional Loss - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37790294 chr17:37790294 stopgain 0.994 0 21 hm7G_associated_SNPs_3708 0 0 0 0 1 PPP1R1B chr17:37790339 5'GT 37790339 Upstream 46bp 3632 chr19 47539224 47539224 1 + G A LUSC 47539224 + 47539204 47539244 41 CCCCTCCTTCGCCGGCAGGTGGAGATGACGGGCAGCAGCGT CCCCTCCTTCGCCGGCAGGTAGAGATGACGGGCAGCAGCGT Direct Loss 0.948268918617068 0 NA NA prediction 0.896537837234135 Functional Loss - NPAS1 ENSG00000130751 CDS Human protein_coding chr19:47539224 chr19:47539224 synonymous SNV . 0 21 hm7G_associated_SNPs_3709 0 0 1 0 1 NPAS1 chr19:47539222 3'AG 47539222 Downstream 3bp 3633 chr19 39214657 39214657 1 + G A COAD 39214657 + 39214637 39214677 41 GCCCCCTTCAACAACTGGATGGAGAGCGCCATGGAGGACCT GCCCCCTTCAACAACTGGATAGAGAGCGCCATGGAGGACCT Direct Loss 0.94826601005361 0 NA NA prediction 0.896532020107219 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39214657 chr19:39214657 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3710 0 0 0 0 2 ACTN4 chr19:39214577 3'AG 39214577 Downstream 81bp 3634 chr19 39214657 39214657 1 + G A COAD 39214657 + 39214637 39214677 41 GCCCCCTTCAACAACTGGATGGAGAGCGCCATGGAGGACCT GCCCCCTTCAACAACTGGATAGAGAGCGCCATGGAGGACCT Direct Loss 0.94826601005361 0 NA NA prediction 0.896532020107219 Functional Loss - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39214657 chr19:39214657 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3710 0 0 0 0 2 ACTN4 chr19:39214717 5'GT 39214717 Upstream 61bp 3635 chr18 43685319 43685319 1 + G T UCEC 43685319 + 43685299 43685339 41 ACTTGAAGCAGAAAGCAAGTGAATACGAGTCAGAAGGTGAG ACTTGAAGCAGAAAGCAAGTTAATACGAGTCAGAAGGTGAG Direct Loss 0.948259578341391 0 NA NA prediction 0.896519156682781 Functional Loss - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43685319 chr18:43685319 stopgain 0.978 1 21 hm7G_associated_SNPs_3711 0 0 1 0 2 HAUS1 chr18:43685334 5'GT 43685334 Upstream 16bp 3636 chr18 43685319 43685319 1 + G T UCEC 43685319 + 43685299 43685339 41 ACTTGAAGCAGAAAGCAAGTGAATACGAGTCAGAAGGTGAG ACTTGAAGCAGAAAGCAAGTTAATACGAGTCAGAAGGTGAG Direct Loss 0.948259578341391 0 NA NA prediction 0.896519156682781 Functional Loss - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43685319 chr18:43685319 stopgain 0.978 1 21 hm7G_associated_SNPs_3711 0 0 1 0 2 HAUS1 chr18:43685374 5'GT 43685374 Upstream 56bp 3637 chr5 176867988 176867988 1 + G T LUAD 176867988 + 176867968 176868008 41 GGCTCAGTTCCCCCAGACCTGGACTGGAAGGGCCAGCCACC GGCTCAGTTCCCCCAGACCTTGACTGGAAGGGCCAGCCACC Direct Loss 0.948250929432391 0 NA NA prediction 0.896501858864782 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176867988 chr5:176867988 synonymous SNV . 0 21 hm7G_associated_SNPs_3712 0 0 1 0 1 GRK6 chr5:176867920 3'AG 176867920 Downstream 69bp 3638 chr17 8248706 8248706 1 + G A GBM 8248706 + 8248686 8248726 41 GCTATTCCCCATTAACATCTGGATCTTCGAGTTGGAAAGGA GCTATTCCCCATTAACATCTAGATCTTCGAGTTGGAAAGGA Direct Loss 0.948241874042134 0 NA NA prediction 0.896483748084267 Functional Loss - ODF4 ENSG00000184650 CDS Human protein_coding chr17:8248706 chr17:8248706 stopgain 0.996 0 21 hm7G_associated_SNPs_3713 0 0 0 0 2 ODF4 chr17:8248661 3'AG 8248661 Downstream 46bp 3639 chr17 8248706 8248706 1 + G A GBM 8248706 + 8248686 8248726 41 GCTATTCCCCATTAACATCTGGATCTTCGAGTTGGAAAGGA GCTATTCCCCATTAACATCTAGATCTTCGAGTTGGAAAGGA Direct Loss 0.948241874042134 0 NA NA prediction 0.896483748084267 Functional Loss - ODF4 ENSG00000184650 CDS Human protein_coding chr17:8248706 chr17:8248706 stopgain 0.996 0 21 hm7G_associated_SNPs_3713 0 0 0 0 2 ODF4 chr17:8248795 5'GT 8248795 Upstream 90bp 3640 chr1 155015923 155015923 1 + G A BLCA 155015923 + 155015903 155015943 41 TACCGCCAGGAGGCCCGGCTGGAGTGGGCCCTGGGGCTGCT TACCGCCAGGAGGCCCGGCTAGAGTGGGCCCTGGGGCTGCT Direct Loss 0.948239253699861 0 NA NA prediction 0.896478507399723 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155015923 chr1:155015923 synonymous SNV . 0 21 hm7G_associated_SNPs_3714 0 0 0 0 2 DCST1 chr1:155015828 3'AG 155015828 Downstream 96bp 3641 chr1 155015923 155015923 1 + G A BLCA 155015923 + 155015903 155015943 41 TACCGCCAGGAGGCCCGGCTGGAGTGGGCCCTGGGGCTGCT TACCGCCAGGAGGCCCGGCTAGAGTGGGCCCTGGGGCTGCT Direct Loss 0.948239253699861 0 NA NA prediction 0.896478507399723 Functional Loss - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155015923 chr1:155015923 synonymous SNV . 0 21 hm7G_associated_SNPs_3714 0 0 0 0 2 DCST1 chr1:155015985 5'GT 155015985 Upstream 63bp 3642 chr17 33319639 33319639 1 + G A rs3135988 33319639 + 33319619 33319659 41 CTTCACAACGCGCAGGAGGTGGAGAAGGAGCCGGGCCAGAG CTTCACAACGCGCAGGAGGTAGAGAAGGAGCCGGGCCAGAG Direct Loss 0.948235597720368 0 NA NA prediction 0.896471195440736 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33319639 chr17:33319639 synonymous SNV . 0 21 hm7G_associated_SNPs_3715 0 0 1 0 2 LIG3 chr17:33319543 3'AG 33319543 Downstream 97bp 3643 chr17 33319639 33319639 1 + G A rs3135988 33319639 + 33319619 33319659 41 CTTCACAACGCGCAGGAGGTGGAGAAGGAGCCGGGCCAGAG CTTCACAACGCGCAGGAGGTAGAGAAGGAGCCGGGCCAGAG Direct Loss 0.948235597720368 0 NA NA prediction 0.896471195440736 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33319639 chr17:33319639 synonymous SNV . 0 21 hm7G_associated_SNPs_3715 0 0 1 0 2 LIG3 chr17:33319711 5'GT 33319711 Upstream 73bp 3644 chr5 50685758 50685758 1 + G C COAD 50685758 + 50685738 50685778 41 TCCAGCAGCAGCAGCCCAATGACAAAACTGTGAGTGGCTCT TCCAGCAGCAGCAGCCCAATCACAAAACTGTGAGTGGCTCT Direct Loss 0.948224420181702 0 NA NA prediction 0.896448840363405 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685758 chr5:50685758 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3717 0 0 0 0 1 ISL1 chr5:50685766 5'GT 50685766 Upstream 9bp 3645 chr2 9463340 9463340 1 + G T SKCM 9463340 + 9463320 9463360 41 GCGGAAATTGCCGAAGAGATGGAAAAGGAGAGGCGCTTCTT GCGGAAATTGCCGAAGAGATTGAAAAGGAGAGGCGCTTCTT Direct Loss 0.948219462070509 0 NA NA prediction 0.896438924141017 Functional Loss - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9463340 chr2:9463340 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_3718 0 0 0 0 2 ASAP2 chr2:9463250 3'AG 9463250 Downstream 91bp 3646 chr2 9463340 9463340 1 + G T SKCM 9463340 + 9463320 9463360 41 GCGGAAATTGCCGAAGAGATGGAAAAGGAGAGGCGCTTCTT GCGGAAATTGCCGAAGAGATTGAAAAGGAGAGGCGCTTCTT Direct Loss 0.948219462070509 0 NA NA prediction 0.896438924141017 Functional Loss - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9463340 chr2:9463340 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_3718 0 0 0 0 2 ASAP2 chr2:9463379 5'GT 9463379 Upstream 40bp 3647 chr15 74002006 74002006 1 + G A rs3825859 74002006 + 74001986 74002026 41 CAGGAGCTGAGGACCAGGATGGGGAGGGAGAAGGCTCCAAG CAGGAGCTGAGGACCAGGATAGGGAGGGAGAAGGCTCCAAG Direct Loss 0.948217854015763 0 NA NA prediction 0.896435708031526 Functional Loss - CD276 ENSG00000103855 CDS Human protein_coding chr15:74002006 chr15:74002006 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_3720 0 0 1 0 2 CD276 chr15:74001989 3'AG 74001989 Downstream 18bp 3648 chr15 74002006 74002006 1 + G A rs3825859 74002006 + 74001986 74002026 41 CAGGAGCTGAGGACCAGGATGGGGAGGGAGAAGGCTCCAAG CAGGAGCTGAGGACCAGGATAGGGAGGGAGAAGGCTCCAAG Direct Loss 0.948217854015763 0 NA NA prediction 0.896435708031526 Functional Loss - CD276 ENSG00000103855 CDS Human protein_coding chr15:74002006 chr15:74002006 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_3720 0 0 1 0 2 CD276 chr15:74002030 5'GT 74002030 Upstream 25bp 3649 chr16 71417890 71417890 1 + G C HNSC 71417890 + 71417870 71417910 41 CAGCTACGGATGTTTGACTTGAACGGGGATGGCAAATTGGG CAGCTACGGATGTTTGACTTCAACGGGGATGGCAAATTGGG Direct Loss 0.948210131173681 0 NA NA prediction 0.896420262347362 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417890 chr16:71417890 nonsynonymous SNV 0.963 1 21 hm7G_associated_SNPs_3721 0 0 0 0 2 CALB2 chr16:71417873 3'AG 71417873 Downstream 18bp 3650 chr16 71417890 71417890 1 + G C HNSC 71417890 + 71417870 71417910 41 CAGCTACGGATGTTTGACTTGAACGGGGATGGCAAATTGGG CAGCTACGGATGTTTGACTTCAACGGGGATGGCAAATTGGG Direct Loss 0.948210131173681 0 NA NA prediction 0.896420262347362 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71417890 chr16:71417890 nonsynonymous SNV 0.963 1 21 hm7G_associated_SNPs_3721 0 0 0 0 2 CALB2 chr16:71417928 5'GT 71417928 Upstream 39bp 3651 chrX 13588035 13588035 1 + G T UCEC 13588035 + 13588015 13588055 41 TGCTCTCCTGGGTGGCAGGTGGTTTCGGGAACGCGGCCAGG TGCTCTCCTGGGTGGCAGGTTGTTTCGGGAACGCGGCCAGG Direct Loss 0.948205373689659 0 NA NA prediction 0.896410747379318 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13588035 chrX:13588035 nonsynonymous SNV 0.935 2 21 hm7G_associated_SNPs_3722 0 0 0 0 1 EGFL6 chrX:13588054 5'GT 13588054 Upstream 20bp 3652 chr8 27373843 27373843 1 + G T LUSC 27373843 + 27373823 27373863 41 TGTTTGTTTTCTAGATCCCTGCTCTGGCCCAGGCAGGTTAC TGTTTGTTTTCTAGATCCCTTCTCTGGCCCAGGCAGGTTAC Direct Loss 0.948203306323509 0 NA NA prediction 0.896406612647019 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27373843 chr8:27373843 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3724 0 0 1 0 2 EPHX2 chr8:27373837 3'AG 27373837 Downstream 7bp 3653 chr8 27373843 27373843 1 + G T LUSC 27373843 + 27373823 27373863 41 TGTTTGTTTTCTAGATCCCTGCTCTGGCCCAGGCAGGTTAC TGTTTGTTTTCTAGATCCCTTCTCTGGCCCAGGCAGGTTAC Direct Loss 0.948203306323509 0 NA NA prediction 0.896406612647019 Functional Loss - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27373843 chr8:27373843 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3724 0 0 1 0 2 EPHX2 chr8:27373915 5'GT 27373915 Upstream 73bp 3654 chr1 156038184 156038184 1 + G A BRCA 156038184 + 156038164 156038204 41 GAAGCCACGATCGTCGTCATGCTCGTGGGTAACAAAAGTGA GAAGCCACGATCGTCGTCATACTCGTGGGTAACAAAAGTGA Direct Loss 0.948202999714576 0 NA NA prediction 0.896405999429151 Functional Loss - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156038184 chr1:156038184 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_3725 0 0 0 0 1 RAB25 chr1:156038254 5'GT 156038254 Upstream 71bp 3655 chr1 150256897 150256897 1 + G A UCEC 150256897 + 150256877 150256917 41 CAGCGTATTGTAGGTGTTTTGCAGAAGCCACAGATGGGGTA CAGCGTATTGTAGGTGTTTTACAGAAGCCACAGATGGGGTA Direct Loss 0.948200599829669 0 NA NA prediction 0.896401199659338 Functional Loss - CIART ENSG00000159208 CDS Human protein_coding chr1:150256897 chr1:150256897 synonymous SNV . 0 21 hm7G_associated_SNPs_3726 0 0 0 0 2 CIART chr1:150256836 3'AG 150256836 Downstream 62bp 3656 chr1 150256897 150256897 1 + G A UCEC 150256897 + 150256877 150256917 41 CAGCGTATTGTAGGTGTTTTGCAGAAGCCACAGATGGGGTA CAGCGTATTGTAGGTGTTTTACAGAAGCCACAGATGGGGTA Direct Loss 0.948200599829669 0 NA NA prediction 0.896401199659338 Functional Loss - CIART ENSG00000159208 CDS Human protein_coding chr1:150256897 chr1:150256897 synonymous SNV . 0 21 hm7G_associated_SNPs_3726 0 0 0 0 2 CIART chr1:150256914 5'GT 150256914 Upstream 18bp 3657 chr1 101194910 101194910 1 + G A SKCM 101194910 + 101194890 101194930 41 ACTTGTGGACATAAGAAACTGGAAAAGGGAATCCAGGTGGA ACTTGTGGACATAAGAAACTAGAAAAGGGAATCCAGGTGGA Direct Loss 0.948192404704775 0 NA NA prediction 0.89638480940955 Functional Loss - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101194910 chr1:101194910 synonymous SNV . 0 21 hm7G_associated_SNPs_3727 0 0 0 0 1 VCAM1 chr1:101194938 5'GT 101194938 Upstream 29bp 3658 chr15 45408927 45408927 1 + G A BLCA 45408927 + 45408907 45408947 41 CTACGCCTCGGCCACGCTATGGTAAGTGCTGGAGGGAAGGC CTACGCCTCGGCCACGCTATAGTAAGTGCTGGAGGGAAGGC Direct Loss 0.948190522298497 0 NA NA prediction 0.896381044596994 Functional Loss - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45408927 chr15:45408927 stopgain 0.964 1 21 hm7G_associated_SNPs_3728 0 0 0 0 1 DUOXA2 chr15:45408927 5'GT 45408927 Upstream 1bp 3659 chr7 123264718 123264718 1 + G T LUAD 123264718 + 123264698 123264738 41 AGCGATGGTCAGCAATGCATGAAGCAGCCAAGCAAGGCCGA AGCGATGGTCAGCAATGCATTAAGCAGCCAAGCAAGGCCGA Direct Loss 0.948179394932603 0 NA NA prediction 0.896358789865205 Functional Loss - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123264718 chr7:123264718 stopgain 0.966 1 21 hm7G_associated_SNPs_3729 0 0 0 0 1 ASB15 chr7:123264623 3'AG 123264623 Downstream 96bp 3660 chr11 720172 720172 1 + G A UCEC 720172 + 720152 720192 41 AAGATCTGGACCCAGGAGATGCTGCTGCAGGTGAACGACCA AAGATCTGGACCCAGGAGATACTGCTGCAGGTGAACGACCA Direct Loss 0.948171639426739 0 NA NA prediction 0.896343278853478 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:720172 chr11:720172 nonsynonymous SNV 0.947 2 21 hm7G_associated_SNPs_3730 0 0 1 0 1 EPS8L2 chr11:720223 5'GT 720223 Upstream 52bp 3661 chr11 119059190 119059190 1 + G T UCEC 119059190 + 119059170 119059210 41 CCATGAGGAGACAGTGTCCAGGATCCAGGGGCAGGGCTCCT CCATGAGGAGACAGTGTCCATGATCCAGGGGCAGGGCTCCT Direct Loss 0.948169411673914 0 NA NA prediction 0.896338823347828 Functional Loss - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119059190 chr11:119059190 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_3731 0 0 0 0 1 PDZD3 chr11:119059260 5'GT 119059260 Upstream 71bp 3662 chr20 30676390 30676390 1 + G A BLCA 30676390 + 30676370 30676410 41 GGAAGCTTGCTGGACTTTCTGAAAAGTGATGAGGGCAGCAA GGAAGCTTGCTGGACTTTCTAAAAAGTGATGAGGGCAGCAA Direct Loss 0.948160219970102 0 NA NA prediction 0.896320439940204 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30676390 chr20:30676390 synonymous SNV . 0 21 hm7G_associated_SNPs_3732 0 0 0 0 2 HCK chr20:30676371 3'AG 30676371 Downstream 20bp 3663 chr20 30676390 30676390 1 + G A BLCA 30676390 + 30676370 30676410 41 GGAAGCTTGCTGGACTTTCTGAAAAGTGATGAGGGCAGCAA GGAAGCTTGCTGGACTTTCTAAAAAGTGATGAGGGCAGCAA Direct Loss 0.948160219970102 0 NA NA prediction 0.896320439940204 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30676390 chr20:30676390 synonymous SNV . 0 21 hm7G_associated_SNPs_3732 0 0 0 0 2 HCK chr20:30676447 5'GT 30676447 Upstream 58bp 3664 chr20 25264817 25264817 1 + G A UCEC 25264817 + 25264797 25264837 41 CCCTCCTCCATGTTCGATGTGCATGTGAAGAGGATCCACGA CCCTCCTCCATGTTCGATGTACATGTGAAGAGGATCCACGA Direct Loss 0.948140716630479 0 NA NA prediction 0.896281433260958 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25264817 chr20:25264817 synonymous SNV . 0 21 hm7G_associated_SNPs_3734 0 0 0 0 2 PYGB chr20:25264740 3'AG 25264740 Downstream 78bp 3665 chr20 25264817 25264817 1 + G A UCEC 25264817 + 25264797 25264837 41 CCCTCCTCCATGTTCGATGTGCATGTGAAGAGGATCCACGA CCCTCCTCCATGTTCGATGTACATGTGAAGAGGATCCACGA Direct Loss 0.948140716630479 0 NA NA prediction 0.896281433260958 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25264817 chr20:25264817 synonymous SNV . 0 21 hm7G_associated_SNPs_3734 0 0 0 0 2 PYGB chr20:25264887 5'GT 25264887 Upstream 71bp 3666 chr1 26751920 26751920 1 + G A SKCM 26751920 + 26751900 26751940 41 CTGGTGGAGTATTCTGTATTGGGAGTGAGAGGCGGCCAAAA CTGGTGGAGTATTCTGTATTAGGAGTGAGAGGCGGCCAAAA Direct Loss 0.948108498092897 0 NA NA prediction 0.896216996185794 Functional Loss - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26751920 chr1:26751920 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_3736 0 0 0 1 1 LIN28A chr1:26751978 5'GT 26751978 Upstream 59bp 3667 chr5 131714085 131714085 1 + G C CESC 131714085 + 131714065 131714105 41 TGCAGTGGAACCTGGTGTGTGAGGACGACTGGAAGGCCCCA TGCAGTGGAACCTGGTGTGTCAGGACGACTGGAAGGCCCCA Direct Loss 0.94806528442478 0 NA NA prediction 0.896130568849561 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131714085 chr5:131714085 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3739 0 0 1 0 2 SLC22A5 chr5:131714070 3'AG 131714070 Downstream 16bp 3668 chr5 131714085 131714085 1 + G C CESC 131714085 + 131714065 131714105 41 TGCAGTGGAACCTGGTGTGTGAGGACGACTGGAAGGCCCCA TGCAGTGGAACCTGGTGTGTCAGGACGACTGGAAGGCCCCA Direct Loss 0.94806528442478 0 NA NA prediction 0.896130568849561 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131714085 chr5:131714085 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3739 0 0 1 0 2 SLC22A5 chr5:131714173 5'GT 131714173 Upstream 89bp 3669 chr2 113819796 113819796 1 + G A LUAD 113819796 + 113819776 113819816 41 GAAGCCAGTGCCTGTCATGTGGGGTGGGGCAGGAGCCGACT GAAGCCAGTGCCTGTCATGTAGGGTGGGGCAGGAGCCGACT Direct Loss 0.948056180371629 0 NA NA prediction 0.896112360743258 Functional Loss - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113819796 chr2:113819796 nonsynonymous SNV 0.421 2 21 hm7G_associated_SNPs_3740 0 0 0 0 2 IL36RN chr2:113819701 3'AG 113819701 Downstream 96bp 3670 chr2 113819796 113819796 1 + G A LUAD 113819796 + 113819776 113819816 41 GAAGCCAGTGCCTGTCATGTGGGGTGGGGCAGGAGCCGACT GAAGCCAGTGCCTGTCATGTAGGGTGGGGCAGGAGCCGACT Direct Loss 0.948056180371629 0 NA NA prediction 0.896112360743258 Functional Loss - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113819796 chr2:113819796 nonsynonymous SNV 0.421 2 21 hm7G_associated_SNPs_3740 0 0 0 0 2 IL36RN chr2:113819828 5'GT 113819828 Upstream 33bp 3671 chr11 65338121 65338121 1 + G A UCEC 65338121 + 65338101 65338141 41 CCGACTGAGGCGGAGACGAAGGTGCTGCAGGCGCGACGGGA CCGACTGAGGCGGAGACGAAAGTGCTGCAGGCGCGACGGGA Direct Loss 0.948042119498938 0 NA NA prediction 0.896084238997876 Functional Loss - SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338121 chr11:65338121 synonymous SNV . 0 21 hm7G_associated_SNPs_3743 0 0 1 0 1 SSSCA1 chr11:65338075 3'AG 65338075 Downstream 47bp 3672 chr10 71868904 71868904 1 + G A UCEC 71868904 + 71868884 71868924 41 GAGACCATCAAAAACTGCCTGTCAGCGGCGGAGGACAAGAA GAGACCATCAAAAACTGCCTATCAGCGGCGGAGGACAAGAA Direct Loss 0.948034421397855 0 NA NA prediction 0.89606884279571 Functional Loss - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71868904 chr10:71868904 synonymous SNV . 0 21 hm7G_associated_SNPs_3744 0 0 1 0 1 H2AFY2 chr10:71868963 5'GT 71868963 Upstream 60bp 3673 chr5 52978959 52978959 1 + G C LUSC 52978959 + 52978939 52978979 41 TCCTCCTAGGATGGAGCTATGACATTGAAGAGAGGAAGGTT TCCTCCTAGGATGGAGCTATCACATTGAAGAGAGGAAGGTT Direct Loss 0.948026077340455 0 NA NA prediction 0.89605215468091 Functional Loss - NDUFS4 ENSG00000164258 CDS Human protein_coding chr5:52978959 chr5:52978959 stoploss 0.922 2 21 hm7G_associated_SNPs_3746 0 0 1 0 1 NDUFS4 chr5:52978948 3'AG 52978948 Downstream 12bp 3674 chr19 47111527 47111527 1 + G A UCEC 47111527 + 47111507 47111547 41 ACCAAGGAGTTGGGGACAGTGATGAGATCCCTGGGACAGAA ACCAAGGAGTTGGGGACAGTAATGAGATCCCTGGGACAGAA Direct Loss 0.948023662679708 0 NA NA prediction 0.896047325359417 Functional Loss - CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111527 chr19:47111527 synonymous SNV . 0 21 hm7G_associated_SNPs_3747 0 0 1 0 1 CALM3 chr19:47111597 5'GT 47111597 Upstream 71bp 3675 chr2 46608739 46608739 1 + G A PAAD 46608739 + 46608719 46608759 41 CTCTCGGGCTTGGCAGGTCTGCAAAGGGTTTTGGGGCTCGA CTCTCGGGCTTGGCAGGTCTACAAAGGGTTTTGGGGCTCGA Direct Loss 0.948012876868726 0 NA NA prediction 0.896025753737451 Functional Loss - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608739 chr2:46608739 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_3748 0 0 1 0 1 EPAS1 chr2:46608735 3'AG 46608735 Downstream 5bp 3676 chr3 129007700 129007700 1 + G A COAD 129007700 + 129007680 129007720 41 TCTTCTCTCCGTGGCAGGATGCAGACTCATCTGAGCGTATC TCTTCTCTCCGTGGCAGGATACAGACTCATCTGAGCGTATC Direct Loss 0.94800181345685 0 NA NA prediction 0.896003626913701 Functional Loss - HMCES ENSG00000183624 CDS Human protein_coding chr3:129007700 chr3:129007700 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_3749 0 0 1 0 1 HMCES chr3:129007697 3'AG 129007697 Downstream 4bp 3677 chr19 52716222 52716222 1 + G A COAD 52716222 + 52716202 52716242 41 CCCTAGGACTCGGTGCGGCTGCTGGCGGTGGAGGCGTGCGT CCCTAGGACTCGGTGCGGCTACTGGCGGTGGAGGCGTGCGT Direct Loss 0.947994594101038 0 NA NA prediction 0.895989188202076 Functional Loss - PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52716222 chr19:52716222 synonymous SNV . 0 21 hm7G_associated_SNPs_3750 0 0 1 0 1 PPP2R1A chr19:52716208 3'AG 52716208 Downstream 15bp 3678 chr1 161182270 161182270 1 + G A UCEC 161182270 + 161182250 161182290 41 CCTAAGCGAGCAGAGATGAAGGTTGGCTGCAGGGAGGGGGA CCTAAGCGAGCAGAGATGAAAGTTGGCTGCAGGGAGGGGGA Direct Loss 0.947988705665996 0 NA NA prediction 0.895977411331991 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161182270 chr1:161182270 synonymous SNV . 0 21 hm7G_associated_SNPs_3752 0 0 1 0 1 NDUFS2 chr1:161182270 5'GT 161182270 Upstream 1bp 3679 chr20 62187046 62187046 1 + G C SKCM 62187046 + 62187026 62187066 41 CATGTGGCAGGCCTGGGCCTGGACAAGATGAAGCTGGGCAA CATGTGGCAGGCCTGGGCCTCGACAAGATGAAGCTGGGCAA Direct Loss 0.947984432891354 0 NA NA prediction 0.895968865782709 Functional Loss - FNDC11 ENSG00000125531 CDS Human protein_coding chr20:62187046 chr20:62187046 synonymous SNV . 0 21 hm7G_associated_SNPs_3753 0 0 0 0 1 FNDC11 chr20:62187007 3'AG 62187007 Downstream 40bp 3680 chr19 48250281 48250281 1 + G T COAD 48250281 + 48250261 48250301 41 TTCGTGGACACTGGCTCCAAGGAAAAAGGTGAGGAGAGGCT TTCGTGGACACTGGCTCCAATGAAAAAGGTGAGGAGAGGCT Direct Loss 0.947982921786072 0 NA NA prediction 0.895965843572144 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48250281 chr19:48250281 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_3754 0 0 1 0 2 NOP53 chr19:48250224 3'AG 48250224 Downstream 58bp 3681 chr19 48250281 48250281 1 + G T COAD 48250281 + 48250261 48250301 41 TTCGTGGACACTGGCTCCAAGGAAAAAGGTGAGGAGAGGCT TTCGTGGACACTGGCTCCAATGAAAAAGGTGAGGAGAGGCT Direct Loss 0.947982921786072 0 NA NA prediction 0.895965843572144 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48250281 chr19:48250281 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_3754 0 0 1 0 2 NOP53 chr19:48250288 5'GT 48250288 Upstream 8bp 3682 chr11 130068463 130068463 1 + G A COAD 130068463 + 130068443 130068483 41 CCTCTCGAAAAGCCAGCAGTGCAATGGGAAGGACGACTGTG CCTCTCGAAAAGCCAGCAGTACAATGGGAAGGACGACTGTG Direct Loss 0.94798270516291 0 NA NA prediction 0.89596541032582 Functional Loss - ST14 ENSG00000149418 CDS Human protein_coding chr11:130068463 chr11:130068463 nonsynonymous SNV 0.780 5 21 hm7G_associated_SNPs_3755 0 0 0 0 1 ST14 chr11:130068403 3'AG 130068403 Downstream 61bp 3683 chr19 52722988 52722988 1 + G A HNSC 52722988 + 52722968 52723008 41 ATCTCTAACCTGGACTGTGTGAACGAGGTGATTGGCATCCG ATCTCTAACCTGGACTGTGTAAACGAGGTGATTGGCATCCG Direct Loss 0.947952250884867 0 NA NA prediction 0.895904501769733 Functional Loss - PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52722988 chr19:52722988 synonymous SNV . 0 21 hm7G_associated_SNPs_3757 0 0 1 0 1 PPP2R1A chr19:52722944 3'AG 52722944 Downstream 45bp 3684 chr3 46751076 46751076 1 + G T KIRC 46751076 + 46751056 46751096 41 CCCTGCCCCACAGAGGATAAGAAGAAGAAGAAGAAGAAGAA CCCTGCCCCACAGAGGATAATAAGAAGAAGAAGAAGAAGAA Direct Loss 0.947925390005907 0 NA NA prediction 0.895850780011814 Functional Loss - TMIE ENSG00000181585 CDS Human protein_coding chr3:46751076 chr3:46751076 nonsynonymous SNV 0.699 1 21 hm7G_associated_SNPs_3759 0 0 0 0 2 TMIE chr3:46751069 3'AG 46751069 Downstream 8bp 3685 chr3 46751076 46751076 1 + G T KIRC 46751076 + 46751056 46751096 41 CCCTGCCCCACAGAGGATAAGAAGAAGAAGAAGAAGAAGAA CCCTGCCCCACAGAGGATAATAAGAAGAAGAAGAAGAAGAA Direct Loss 0.947925390005907 0 NA NA prediction 0.895850780011814 Functional Loss - TMIE ENSG00000181585 CDS Human protein_coding chr3:46751076 chr3:46751076 nonsynonymous SNV 0.699 1 21 hm7G_associated_SNPs_3759 0 0 0 0 2 TMIE chr3:46751071 3'AG 46751071 Downstream 6bp 3686 chr8 42012412 42012412 1 + G T LUAD 42012412 + 42012392 42012432 41 AAGATCTTTTTTGTGGCCGTGATCCAGACGGAGGTCCCCCC AAGATCTTTTTTGTGGCCGTTATCCAGACGGAGGTCCCCCC Direct Loss 0.94790445331154 0 NA NA prediction 0.895808906623081 Functional Loss - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42012412 chr8:42012412 synonymous SNV . 0 21 hm7G_associated_SNPs_3760 0 0 1 0 1 AP3M2 chr8:42012478 5'GT 42012478 Upstream 67bp 3687 chr12 125603198 125603198 1 + G T UCEC 125603198 + 125603178 125603218 41 TCTTTGCAGGTCGGCTGGATGATGTGGAACTGGATGGTGTC TCTTTGCAGGTCGGCTGGATTATGTGGAACTGGATGGTGTC Direct Loss 0.947904212362049 0 NA NA prediction 0.895808424724099 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125603198 chr12:125603198 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3761 0 0 0 0 1 AACS chr12:125603187 3'AG 125603187 Downstream 12bp 3688 chr14 58863044 58863044 1 + G A LUAD 58863044 + 58863024 58863064 41 GCAGAGCCTCAAAAGGCTGAGGAGCAGGGCACGCAGGTGCA GCAGAGCCTCAAAAGGCTGAAGAGCAGGGCACGCAGGTGCA Direct Loss 0.947897456140333 0 NA NA prediction 0.895794912280667 Functional Loss - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58863044 chr14:58863044 synonymous SNV . 0 21 hm7G_associated_SNPs_3763 0 0 0 1 2 TOMM20L chr14:58863016 3'AG 58863016 Downstream 29bp 3689 chr14 58863044 58863044 1 + G A LUAD 58863044 + 58863024 58863064 41 GCAGAGCCTCAAAAGGCTGAGGAGCAGGGCACGCAGGTGCA GCAGAGCCTCAAAAGGCTGAAGAGCAGGGCACGCAGGTGCA Direct Loss 0.947897456140333 0 NA NA prediction 0.895794912280667 Functional Loss - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58863044 chr14:58863044 synonymous SNV . 0 21 hm7G_associated_SNPs_3763 0 0 0 1 2 TOMM20L chr14:58863059 5'GT 58863059 Upstream 16bp 3690 chr19 17339699 17339699 1 + G A rs116707975 17339699 + 17339679 17339719 41 CTCAGATCCAGAAATTCGATGACCAAGGAGACAGCGAGGGC CTCAGATCCAGAAATTCGATAACCAAGGAGACAGCGAGGGC Direct Loss 0.947896317048384 0 NA NA prediction 0.895792634096768 Functional Loss - OCEL1 ENSG00000099330 CDS Human protein_coding chr19:17339699 chr19:17339699 nonsynonymous SNV 0.026 1 21 hm7G_associated_SNPs_3764 0 0 0 0 1 OCEL1 chr19:17339612 3'AG 17339612 Downstream 88bp 3691 chr3 170015134 170015134 1 + G C BRCA 170015134 + 170015114 170015154 41 GTCATCCTCAAACAGGATTTGCTGATATTCAGGGACACCCG GTCATCCTCAAACAGGATTTCCTGATATTCAGGGACACCCG Direct Loss 0.947871385643331 0 NA NA prediction 0.895742771286661 Functional Loss - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170015134 chr3:170015134 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3766 0 0 0 0 2 PRKCI chr3:170015092 3'AG 170015092 Downstream 43bp 3692 chr3 170015134 170015134 1 + G C BRCA 170015134 + 170015114 170015154 41 GTCATCCTCAAACAGGATTTGCTGATATTCAGGGACACCCG GTCATCCTCAAACAGGATTTCCTGATATTCAGGGACACCCG Direct Loss 0.947871385643331 0 NA NA prediction 0.895742771286661 Functional Loss - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170015134 chr3:170015134 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3766 0 0 0 0 2 PRKCI chr3:170015181 5'GT 170015181 Upstream 48bp 3693 chr1 89844102 89844102 1 + G A SKCM 89844102 + 89844082 89844122 41 ACAGTACGGGATTTCACTCTGGAGCTGAAGTTGAACGGTCA ACAGTACGGGATTTCACTCTAGAGCTGAAGTTGAACGGTCA Direct Loss 0.947871348123822 0 NA NA prediction 0.895742696247644 Functional Loss - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89844102 chr1:89844102 synonymous SNV . 0 21 hm7G_associated_SNPs_3767 0 0 0 0 1 GBP6 chr1:89844172 5'GT 89844172 Upstream 71bp 3694 chr11 112087006 112087006 1 + G C HNSC 112087006 + 112086986 112087026 41 TTCCAGCACCAGGAACCAATGAAGAAGATGGTGGGGTTATT TTCCAGCACCAGGAACCAATCAAGAAGATGGTGGGGTTATT Direct Loss 0.94785935746365 0 NA NA prediction 0.8957187149273 Functional Loss - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112087006 chr11:112087006 nonsynonymous SNV 0.726 2 21 hm7G_associated_SNPs_3768 0 0 0 0 2 BCO2 chr11:112086943 3'AG 112086943 Downstream 64bp 3695 chr11 112087006 112087006 1 + G C HNSC 112087006 + 112086986 112087026 41 TTCCAGCACCAGGAACCAATGAAGAAGATGGTGGGGTTATT TTCCAGCACCAGGAACCAATCAAGAAGATGGTGGGGTTATT Direct Loss 0.94785935746365 0 NA NA prediction 0.8957187149273 Functional Loss - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112087006 chr11:112087006 nonsynonymous SNV 0.726 2 21 hm7G_associated_SNPs_3768 0 0 0 0 2 BCO2 chr11:112087053 5'GT 112087053 Upstream 48bp 3696 chr4 186350589 186350589 1 + G A rs565293335 186350589 + 186350569 186350609 41 CCTGCGGAAGGAGGAAAAACGGACATGGAAAGGATTGGCCT CCTGCGGAAGGAGGAAAAACAGACATGGAAAGGATTGGCCT Direct Loss 0.947852523114122 0 NA NA prediction 0.895705046228244 Functional Loss - C4orf47 ENSG00000205129 CDS Human protein_coding chr4:186350589 chr4:186350589 synonymous SNV . 0 21 hm7G_associated_SNPs_3769 0 0 0 0 1 C4orf47 chr4:186350665 5'GT 186350665 Upstream 77bp 3697 chr5 76259219 76259219 1 + G A SKCM 76259219 + 76259199 76259239 41 ACTTTGTGGAGCTGCTGGGAGGAACTGGATTGGACCCTTCC ACTTTGTGGAGCTGCTGGGAAGAACTGGATTGGACCCTTCC Direct Loss 0.9478499498013 0 NA NA prediction 0.895699899602599 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76259219 chr5:76259219 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3770 0 0 0 0 2 CRHBP chr5:76259168 3'AG 76259168 Downstream 52bp 3698 chr5 76259219 76259219 1 + G A SKCM 76259219 + 76259199 76259239 41 ACTTTGTGGAGCTGCTGGGAGGAACTGGATTGGACCCTTCC ACTTTGTGGAGCTGCTGGGAAGAACTGGATTGGACCCTTCC Direct Loss 0.9478499498013 0 NA NA prediction 0.895699899602599 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76259219 chr5:76259219 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3770 0 0 0 0 2 CRHBP chr5:76259285 5'GT 76259285 Upstream 67bp 3699 chrX 154444805 154444805 1 + G T UCEC 154444805 + 154444785 154444825 41 GCAAAGGAGAAATGGCCACAGGGAATGGGCGGCGGCTCCAC GCAAAGGAGAAATGGCCACATGGAATGGGCGGCGGCTCCAC Direct Loss 0.947845560033137 0 NA NA prediction 0.895691120066274 Functional Loss - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154444805 chrX:154444805 nonsynonymous SNV 0.496 2 21 hm7G_associated_SNPs_3771 0 0 1 0 1 VBP1 chrX:154444852 5'GT 154444852 Upstream 48bp 3700 chr16 29815362 29815362 1 + G A STAD 29815362 + 29815342 29815382 41 AATGCCGAGATCCACATCCTGAAGAATAAAGGCCGGAAGAG AATGCCGAGATCCACATCCTAAAGAATAAAGGCCGGAAGAG Direct Loss 0.947804581582663 0 NA NA prediction 0.895609163165326 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29815362 chr16:29815362 synonymous SNV . 0 21 hm7G_associated_SNPs_3776 0 0 1 0 2 KIF22 chr16:29815319 3'AG 29815319 Downstream 44bp 3701 chr16 29815362 29815362 1 + G A STAD 29815362 + 29815342 29815382 41 AATGCCGAGATCCACATCCTGAAGAATAAAGGCCGGAAGAG AATGCCGAGATCCACATCCTAAAGAATAAAGGCCGGAAGAG Direct Loss 0.947804581582663 0 NA NA prediction 0.895609163165326 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29815362 chr16:29815362 synonymous SNV . 0 21 hm7G_associated_SNPs_3776 0 0 1 0 2 KIF22 chr16:29815386 5'GT 29815386 Upstream 25bp 3702 chr19 18724826 18724826 1 + G C KIRC 18724826 + 18724806 18724846 41 CCCAAACTGAGTGTGAAGCAGGTGAGGGCCCGCCGGCAGGG CCCAAACTGAGTGTGAAGCACGTGAGGGCCCGCCGGCAGGG Direct Loss 0.947800030395769 0 NA NA prediction 0.895600060791539 Functional Loss - TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18724826 chr19:18724826 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_3778 0 0 0 0 1 TMEM59L chr19:18724826 5'GT 18724826 Upstream 1bp 3703 chr15 101445785 101445785 1 + G A STAD 101445785 + 101445765 101445805 41 TCGAGAGTGGGAAGAAGGAAGGGGCCAAGCTGGAATGCGGG TCGAGAGTGGGAAGAAGGAAAGGGCCAAGCTGGAATGCGGG Direct Loss 0.947792556075398 0 NA NA prediction 0.895585112150797 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101445785 chr15:101445785 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3779 0 0 0 0 1 ALDH1A3 chr15:101445728 3'AG 101445728 Downstream 58bp 3704 chr4 95200108 95200108 1 + G C BLCA 95200108 + 95200088 95200128 41 ACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAAATGGC ACAGAAATGTGCAATGTCATCATGCAGTTGAGGAAAATGGC Direct Loss 0.947784269672687 0 NA NA prediction 0.895568539345374 Functional Loss - SMARCAD1 ENSG00000163104 CDS Human protein_coding chr4:95200108 chr4:95200108 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3780 0 0 1 0 3 SMARCAD1 chr4:95200074 3'AG 95200074 Downstream 35bp 3705 chr4 95200108 95200108 1 + G C BLCA 95200108 + 95200088 95200128 41 ACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAAATGGC ACAGAAATGTGCAATGTCATCATGCAGTTGAGGAAAATGGC Direct Loss 0.947784269672687 0 NA NA prediction 0.895568539345374 Functional Loss - SMARCAD1 ENSG00000163104 CDS Human protein_coding chr4:95200108 chr4:95200108 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3780 0 0 1 0 3 SMARCAD1 chr4:95200080 3'AG 95200080 Downstream 29bp 3706 chr4 95200108 95200108 1 + G C BLCA 95200108 + 95200088 95200128 41 ACAGAAATGTGCAATGTCATGATGCAGTTGAGGAAAATGGC ACAGAAATGTGCAATGTCATCATGCAGTTGAGGAAAATGGC Direct Loss 0.947784269672687 0 NA NA prediction 0.895568539345374 Functional Loss - SMARCAD1 ENSG00000163104 CDS Human protein_coding chr4:95200108 chr4:95200108 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3780 0 0 1 0 3 SMARCAD1 chr4:95200201 5'GT 95200201 Upstream 94bp 3707 chr17 33457354 33457354 1 + G A SKCM 33457354 + 33457334 33457374 41 CCTGAGAACTACCCCATCCAGATCACCGTGCGGCGCAAGGA CCTGAGAACTACCCCATCCAAATCACCGTGCGGCGCAAGGA Direct Loss 0.947772006040473 0 NA NA prediction 0.895544012080945 Functional Loss - FNDC8 ENSG00000073598 CDS Human protein_coding chr17:33457354 chr17:33457354 synonymous SNV . 0 21 hm7G_associated_SNPs_3781 0 0 0 0 1 FNDC8 chr17:33457301 3'AG 33457301 Downstream 54bp 3708 chr2 143718226 143718226 1 + G A SKCM 143718226 + 143718206 143718246 41 TAAGAATAGAGGATATCCTTGAAGTAATTGAGAAGGAAGGA TAAGAATAGAGGATATCCTTAAAGTAATTGAGAAGGAAGGA Direct Loss 0.947755052689651 0 NA NA prediction 0.895510105379302 Functional Loss - KYNU ENSG00000115919 CDS Human protein_coding chr2:143718226 chr2:143718226 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_3785 0 0 1 0 1 KYNU chr2:143718193 3'AG 143718193 Downstream 34bp 3709 chr10 85903753 85903753 1 + G A BLCA 85903753 + 85903733 85903773 41 TCCTTCTGTGTTCTGCAGTTGATCAGATGGGAAGATGGTTT TCCTTCTGTGTTCTGCAGTTAATCAGATGGGAAGATGGTTT Direct Loss 0.947742833308564 0 NA NA prediction 0.895485666617128 Functional Loss - GHITM ENSG00000165678 CDS Human protein_coding chr10:85903753 chr10:85903753 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3786 0 0 1 0 1 GHITM chr10:85903751 3'AG 85903751 Downstream 3bp 3710 chr2 148672841 148672841 1 + G A LIHC 148672841 + 148672821 148672861 41 TGAAAGCAAGGGGAAGATTTGGTTGTGTCTGGAAAGCCCAG TGAAAGCAAGGGGAAGATTTAGTTGTGTCTGGAAAGCCCAG Direct Loss 0.947736769782778 0 NA NA prediction 0.895473539565556 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148672841 chr2:148672841 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3787 0 0 1 0 2 ACVR2A chr2:148672760 3'AG 148672760 Downstream 82bp 3711 chr2 148672841 148672841 1 + G A LIHC 148672841 + 148672821 148672861 41 TGAAAGCAAGGGGAAGATTTGGTTGTGTCTGGAAAGCCCAG TGAAAGCAAGGGGAAGATTTAGTTGTGTCTGGAAAGCCCAG Direct Loss 0.947736769782778 0 NA NA prediction 0.895473539565556 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148672841 chr2:148672841 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3787 0 0 1 0 2 ACVR2A chr2:148672903 5'GT 148672903 Upstream 63bp 3712 chr8 87163722 87163722 1 + G C UCEC 87163722 + 87163702 87163742 41 AACCTTTATTTGAAGCTGTAGGTGGCAGTGGGGGAAAGACA AACCTTTATTTGAAGCTGTACGTGGCAGTGGGGGAAAGACA Direct Loss 0.947733906333864 0 NA NA prediction 0.895467812667728 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87163722 chr8:87163722 nonsynonymous SNV 0.987 2 21 hm7G_associated_SNPs_3788 0 0 0 0 2 ATP6V0D2 chr8:87163695 3'AG 87163695 Downstream 28bp 3713 chr8 87163722 87163722 1 + G C UCEC 87163722 + 87163702 87163742 41 AACCTTTATTTGAAGCTGTAGGTGGCAGTGGGGGAAAGACA AACCTTTATTTGAAGCTGTACGTGGCAGTGGGGGAAAGACA Direct Loss 0.947733906333864 0 NA NA prediction 0.895467812667728 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87163722 chr8:87163722 nonsynonymous SNV 0.987 2 21 hm7G_associated_SNPs_3788 0 0 0 0 2 ATP6V0D2 chr8:87163769 5'GT 87163769 Upstream 48bp 3714 chrX 118717138 118717138 1 + G T LUAD 118717138 + 118717118 118717158 41 GTCCAGCAAACAGCCAGGCTGCTCAGCTGTACCAGGAGAAC GTCCAGCAAACAGCCAGGCTTCTCAGCTGTACCAGGAGAAC Direct Loss 0.947718302051842 0 NA NA prediction 0.895436604103684 Functional Loss - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118717138 chrX:118717138 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3789 0 0 1 1 1 UBE2A chrX:118717090 3'AG 118717090 Downstream 49bp 3715 chr15 45898642 45898642 1 + G C SARC 45898642 + 45898622 45898662 41 GCAAAAAGAAGAGTTGGAAAGGGAGCAGCAACGAGAGAAGG GCAAAAAGAAGAGTTGGAAACGGAGCAGCAACGAGAGAAGG Direct Loss 0.947718253930723 0 NA NA prediction 0.895436507861445 Functional Loss - BLOC1S6 ENSG00000104164 CDS Human protein_coding chr15:45898642 chr15:45898642 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3790 0 0 1 2 1 BLOC1S6 chr15:45898593 3'AG 45898593 Downstream 50bp 3716 chr19 4258313 4258313 1 + G C rs201053207 4258313 + 4258293 4258333 41 CTCCAGGAGCTGAAAGACCTGAACCAGCGGCAGGCGCACGT CTCCAGGAGCTGAAAGACCTCAACCAGCGGCAGGCGCACGT Direct Loss 0.947717078023845 0 NA NA prediction 0.895434156047689 Functional Loss - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4258313 chr19:4258313 synonymous SNV . 0 21 hm7G_associated_SNPs_3791 0 0 0 0 1 CCDC94 chr19:4258239 3'AG 4258239 Downstream 75bp 3717 chr14 23792231 23792231 1 + G A BLCA 23792231 + 23792211 23792251 41 GCCCGGTGATCATGTCCATTGAGGAGAAGATGGAGGCTGAT GCCCGGTGATCATGTCCATTAAGGAGAAGATGGAGGCTGAT Direct Loss 0.947715876331789 0 NA NA prediction 0.895431752663578 Functional Loss - BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23792231 chr14:23792231 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3792 0 0 1 0 2 BCL2L2-PABPN1;PABPN1 chr14:23792208 3'AG 23792208 Downstream 24bp 3718 chr14 23792231 23792231 1 + G A BLCA 23792231 + 23792211 23792251 41 GCCCGGTGATCATGTCCATTGAGGAGAAGATGGAGGCTGAT GCCCGGTGATCATGTCCATTAAGGAGAAGATGGAGGCTGAT Direct Loss 0.947715876331789 0 NA NA prediction 0.895431752663578 Functional Loss - BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23792231 chr14:23792231 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3792 0 0 1 0 2 BCL2L2-PABPN1;PABPN1 chr14:23792275 5'GT 23792275 Upstream 45bp 3719 chr2 55746969 55746969 1 + G T PRAD 55746969 + 55746949 55746989 41 AGAAGAAGACGAGGTGGAGTGGGTAGTGGAGAGCATCGCGG AGAAGAAGACGAGGTGGAGTTGGTAGTGGAGAGCATCGCGG Direct Loss 0.94770844317304 0 NA NA prediction 0.895416886346081 Functional Loss - CFAP36 ENSG00000163001 CDS Human protein_coding chr2:55746969 chr2:55746969 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_3794 0 0 1 0 1 CFAP36 chr2:55747052 5'GT 55747052 Upstream 84bp 3720 chr11 70269080 70269080 1 + G A rs35955195 70269080 + 70269060 70269100 41 TTCGGCGGGAAGTATGGGGTGCAGAAGGATCGGATGGATAA TTCGGCGGGAAGTATGGGGTACAGAAGGATCGGATGGATAA Direct Loss 0.947707017872932 0 NA NA prediction 0.895414035745863 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70269080 chr11:70269080 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_3795 0 0 1 0 2 CTTN chr11:70269046 3'AG 70269046 Downstream 35bp 3721 chr11 70269080 70269080 1 + G A rs35955195 70269080 + 70269060 70269100 41 TTCGGCGGGAAGTATGGGGTGCAGAAGGATCGGATGGATAA TTCGGCGGGAAGTATGGGGTACAGAAGGATCGGATGGATAA Direct Loss 0.947707017872932 0 NA NA prediction 0.895414035745863 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70269080 chr11:70269080 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_3795 0 0 1 0 2 CTTN chr11:70269101 5'GT 70269101 Upstream 22bp 3722 chr1 44680075 44680075 1 + G A HNSC 44680075 + 44680055 44680095 41 TTCAAGAGGCCCGAGGGCATGCACCGGGAAGTCTATGCCTT TTCAAGAGGCCCGAGGGCATACACCGGGAAGTCTATGCCTT Direct Loss 0.947702698129958 0 NA NA prediction 0.895405396259916 Functional Loss - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44680075 chr1:44680075 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_3796 0 0 1 0 1 DMAP1 chr1:44680022 3'AG 44680022 Downstream 54bp 3723 chr7 150416138 150416138 1 + G A SKCM 150416138 + 150416118 150416158 41 GGACTCTTCCAGGTAAGCATGGGAGGAAGGAAGATGGCGAC GGACTCTTCCAGGTAAGCATAGGAGGAAGGAAGATGGCGAC Direct Loss 0.947701020051403 0 NA NA prediction 0.895402040102806 Functional Loss - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150416138 chr7:150416138 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_3797 0 0 0 0 2 GIMAP1;GIMAP1-GIMAP5 chr7:150416130 3'AG 150416130 Downstream 9bp 3724 chr7 150416138 150416138 1 + G A SKCM 150416138 + 150416118 150416158 41 GGACTCTTCCAGGTAAGCATGGGAGGAAGGAAGATGGCGAC GGACTCTTCCAGGTAAGCATAGGAGGAAGGAAGATGGCGAC Direct Loss 0.947701020051403 0 NA NA prediction 0.895402040102806 Functional Loss - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150416138 chr7:150416138 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_3797 0 0 0 0 2 GIMAP1;GIMAP1-GIMAP5 chr7:150416178 5'GT 150416178 Upstream 41bp 3725 chr10 135369516 135369516 1 - C T LUAD 135369516 - 135369496 135369536 41 GCAAAGGAGATTTGTGCCCTGGACAGCAGCAAGGAGCAGCT GCAAAGGAGATTTGTGCCCTAGACAGCAGCAAGGAGCAGCT Direct Loss 0.94767022404558 0 NA NA prediction 0.895340448091161 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135369516 chr10:135369516 synonymous SNV . 0 21 hm7G_associated_SNPs_3800 0 0 0 0 2 SYCE1 chr10:135369485 5'GT 135369485 Upstream 32bp 3726 chr10 135369516 135369516 1 - C T LUAD 135369516 - 135369496 135369536 41 GCAAAGGAGATTTGTGCCCTGGACAGCAGCAAGGAGCAGCT GCAAAGGAGATTTGTGCCCTAGACAGCAGCAAGGAGCAGCT Direct Loss 0.94767022404558 0 NA NA prediction 0.895340448091161 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135369516 chr10:135369516 synonymous SNV . 0 21 hm7G_associated_SNPs_3800 0 0 0 0 2 SYCE1 chr10:135369551 3'AG 135369551 Downstream 36bp 3727 chr19 48239787 48239787 1 + G A UCEC 48239787 + 48239767 48239807 41 TTTCCTGATTGCCAGAAAATGCAGGTGGGAAGCTGCCCAGG TTTCCTGATTGCCAGAAAATACAGGTGGGAAGCTGCCCAGG Direct Loss 0.947661998130917 0 NA NA prediction 0.895323996261835 Functional Loss - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48239787 chr19:48239787 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_3802 0 0 0 0 1 EHD2 chr19:48239790 5'GT 48239790 Upstream 4bp 3728 chr9 131186797 131186797 1 + G A CESC 131186797 + 131186777 131186817 41 TCCTTGCATCCCTGCGGGCTGAAGGGGCAGACCAGCTTGCT TCCTTGCATCCCTGCGGGCTAAAGGGGCAGACCAGCTTGCT Direct Loss 0.947661001511917 0 NA NA prediction 0.895322003023833 Functional Loss - CERCAM ENSG00000167123 CDS Human protein_coding chr9:131186797 chr9:131186797 nonsynonymous SNV 0.166 0 21 hm7G_associated_SNPs_3803 0 0 1 0 1 CERCAM chr9:131186893 5'GT 131186893 Upstream 97bp 3729 chrX 128881662 128881662 1 + G T ESCA 128881662 + 128881642 128881682 41 ACAACCAATCTTGTGGACCTGGTATGGGGATCAGAGAGGCC ACAACCAATCTTGTGGACCTTGTATGGGGATCAGAGAGGCC Direct Loss 0.947655786372816 0 NA NA prediction 0.895311572745632 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128881662 chrX:128881662 synonymous SNV . 0 21 hm7G_associated_SNPs_3805 0 0 0 0 2 XPNPEP2 chrX:128881583 3'AG 128881583 Downstream 80bp 3730 chrX 128881662 128881662 1 + G T ESCA 128881662 + 128881642 128881682 41 ACAACCAATCTTGTGGACCTGGTATGGGGATCAGAGAGGCC ACAACCAATCTTGTGGACCTTGTATGGGGATCAGAGAGGCC Direct Loss 0.947655786372816 0 NA NA prediction 0.895311572745632 Functional Loss - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128881662 chrX:128881662 synonymous SNV . 0 21 hm7G_associated_SNPs_3805 0 0 0 0 2 XPNPEP2 chrX:128881729 5'GT 128881729 Upstream 68bp 3731 chr11 129312799 129312799 1 + G A BLCA 129312799 + 129312779 129312819 41 TGGTATCAGAATCGCAGGATGAAATGGAAGAAAATGGTAAG TGGTATCAGAATCGCAGGATAAAATGGAAGAAAATGGTAAG Direct Loss 0.9476534229039 0 NA NA prediction 0.8953068458078 Functional Loss - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129312799 chr11:129312799 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3806 0 0 0 0 2 BARX2 chr11:129312730 3'AG 129312730 Downstream 70bp 3732 chr11 129312799 129312799 1 + G A BLCA 129312799 + 129312779 129312819 41 TGGTATCAGAATCGCAGGATGAAATGGAAGAAAATGGTAAG TGGTATCAGAATCGCAGGATAAAATGGAAGAAAATGGTAAG Direct Loss 0.9476534229039 0 NA NA prediction 0.8953068458078 Functional Loss - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129312799 chr11:129312799 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3806 0 0 0 0 2 BARX2 chr11:129312814 5'GT 129312814 Upstream 16bp 3733 chr1 230827187 230827187 1 + G A LUSC 230827187 + 230827167 230827207 41 AAGAAGATGGAAGAGAGCCTGAAAAGGCTGAAACAAGCCAG AAGAAGATGGAAGAGAGCCTAAAAAGGCTGAAACAAGCCAG Direct Loss 0.947650150141849 0 NA NA prediction 0.895300300283698 Functional Loss - COG2 ENSG00000135775 CDS Human protein_coding chr1:230827187 chr1:230827187 synonymous SNV . 0 21 hm7G_associated_SNPs_3807 0 0 1 0 1 COG2 chr1:230827130 3'AG 230827130 Downstream 58bp 3734 chr5 150856317 150856317 1 + G T LIHC 150856317 + 150856297 150856337 41 CCTCAACCTGCCCAACTGCTGGTACGTGGAGGGAGGATGGA CCTCAACCTGCCCAACTGCTTGTACGTGGAGGGAGGATGGA Direct Loss 0.947641792527847 0 NA NA prediction 0.895283585055693 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150856317 chr5:150856317 nonsynonymous SNV 0.985 3 21 hm7G_associated_SNPs_3809 0 0 0 0 1 SLC36A1 chr5:150856317 5'GT 150856317 Upstream 1bp 3735 chr3 138347957 138347957 1 + G A rs641320 138347957 + 138347937 138347977 41 TTACCTTTACAGAAAAAGATGCTATGGACGTATGGTGCAAT TTACCTTTACAGAAAAAGATACTATGGACGTATGGTGCAAT Direct Loss 0.947637184377071 0 NA NA prediction 0.895274368754142 Functional Loss - FAIM ENSG00000158234 CDS Human protein_coding chr3:138347957 chr3:138347957 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_3812 0 1 1 0 2 FAIM chr3:138347949 3'AG 138347949 Downstream 9bp 3736 chr3 138347957 138347957 1 + G A rs641320 138347957 + 138347937 138347977 41 TTACCTTTACAGAAAAAGATGCTATGGACGTATGGTGCAAT TTACCTTTACAGAAAAAGATACTATGGACGTATGGTGCAAT Direct Loss 0.947637184377071 0 NA NA prediction 0.895274368754142 Functional Loss - FAIM ENSG00000158234 CDS Human protein_coding chr3:138347957 chr3:138347957 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_3812 0 1 1 0 2 FAIM chr3:138347998 5'GT 138347998 Upstream 42bp 3737 chr12 6344439 6344439 1 + G T SARC 6344439 + 6344419 6344459 41 TACAAGGACACCTACAACAAGCTGAAAACCAAGGATGAGCC TACAAGGACACCTACAACAATCTGAAAACCAAGGATGAGCC Direct Loss 0.947633932971905 0 NA NA prediction 0.89526786594381 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6344439 chr12:6344439 nonsynonymous SNV 0.765 1 21 hm7G_associated_SNPs_3813 0 0 1 0 2 CD9 chr12:6344395 3'AG 6344395 Downstream 45bp 3738 chr12 6344439 6344439 1 + G T SARC 6344439 + 6344419 6344459 41 TACAAGGACACCTACAACAAGCTGAAAACCAAGGATGAGCC TACAAGGACACCTACAACAATCTGAAAACCAAGGATGAGCC Direct Loss 0.947633932971905 0 NA NA prediction 0.89526786594381 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6344439 chr12:6344439 nonsynonymous SNV 0.765 1 21 hm7G_associated_SNPs_3813 0 0 1 0 2 CD9 chr12:6344493 5'GT 6344493 Upstream 55bp 3739 chr3 133293922 133293922 1 + G C BLCA 133293922 + 133293902 133293942 41 AATTGGAGCAAAAAGAGGTTGATTACAGCGGCCTCAGGGTT AATTGGAGCAAAAAGAGGTTCATTACAGCGGCCTCAGGGTT Direct Loss 0.947617031285105 0 NA NA prediction 0.895234062570209 Functional Loss - CDV3 ENSG00000091527 CDS Human protein_coding chr3:133293922 chr3:133293922 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3816 0 0 1 0 2 CDV3 chr3:133293883 3'AG 133293883 Downstream 40bp 3740 chr3 133293922 133293922 1 + G C BLCA 133293922 + 133293902 133293942 41 AATTGGAGCAAAAAGAGGTTGATTACAGCGGCCTCAGGGTT AATTGGAGCAAAAAGAGGTTCATTACAGCGGCCTCAGGGTT Direct Loss 0.947617031285105 0 NA NA prediction 0.895234062570209 Functional Loss - CDV3 ENSG00000091527 CDS Human protein_coding chr3:133293922 chr3:133293922 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3816 0 0 1 0 2 CDV3 chr3:133293959 5'GT 133293959 Upstream 38bp 3741 chr3 49450021 49450021 1 + G C rs140484970 49450021 + 49450001 49450041 41 TTAAGTCTCCTGGGCATCCAGCTGGCGTGGGGGTTCTACGG TTAAGTCTCCTGGGCATCCACCTGGCGTGGGGGTTCTACGG Direct Loss 0.947612327170266 0 NA NA prediction 0.895224654340531 Functional Loss - TCTA ENSG00000145022 CDS Human protein_coding chr3:49450021 chr3:49450021 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3817 0 0 1 0 1 TCTA chr3:49450073 5'GT 49450073 Upstream 53bp 3742 chr11 73627688 73627688 1 + G A BLCA 73627688 + 73627668 73627708 41 GATGGAAACATTTATCAGCTGGATGTGAGGAGTCCAAGGTG GATGGAAACATTTATCAGCTAGATGTGAGGAGTCCAAGGTG Direct Loss 0.947608541202872 0 NA NA prediction 0.895217082405744 Functional Loss - PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73627688 chr11:73627688 synonymous SNV . 0 21 hm7G_associated_SNPs_3818 0 0 1 0 2 PAAF1 chr11:73627590 3'AG 73627590 Downstream 99bp 3743 chr11 73627688 73627688 1 + G A BLCA 73627688 + 73627668 73627708 41 GATGGAAACATTTATCAGCTGGATGTGAGGAGTCCAAGGTG GATGGAAACATTTATCAGCTAGATGTGAGGAGTCCAAGGTG Direct Loss 0.947608541202872 0 NA NA prediction 0.895217082405744 Functional Loss - PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73627688 chr11:73627688 synonymous SNV . 0 21 hm7G_associated_SNPs_3818 0 0 1 0 2 PAAF1 chr11:73627705 5'GT 73627705 Upstream 18bp 3744 chr17 73258723 73258723 1 + G C LUAD 73258723 + 73258703 73258743 41 AGACTCAGCTCATCAAAGCTGCTCCAGCAGGGAAAACAAGT AGACTCAGCTCATCAAAGCTCCTCCAGCAGGGAAAACAAGT Direct Loss 0.947606026929984 0 NA NA prediction 0.895212053859969 Functional Loss - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73258723 chr17:73258723 nonsynonymous SNV 0.964 1 21 hm7G_associated_SNPs_3819 0 0 1 0 1 MRPS7 chr17:73258769 5'GT 73258769 Upstream 47bp 3745 chr20 62505056 62505056 1 + G T LUSC 62505056 + 62505036 62505076 41 GTCACTCTGCGCCAGGTCCTGGCAGCCAAGGAGAGGCACTG GTCACTCTGCGCCAGGTCCTTGCAGCCAAGGAGAGGCACTG Direct Loss 0.94759644386151 0 NA NA prediction 0.89519288772302 Functional Loss - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505056 chr20:62505056 synonymous SNV . 0 21 hm7G_associated_SNPs_3820 0 0 1 0 1 TPD52L2 chr20:62505021 3'AG 62505021 Downstream 36bp 3746 chr17 38451705 38451705 1 + G A LUSC 38451705 + 38451685 38451725 41 TCGCAAAGCACTGGATGTTTGCAGGTGAGTTACGGCTCTGT TCGCAAAGCACTGGATGTTTACAGGTGAGTTACGGCTCTGT Direct Loss 0.947582430711679 0 NA NA prediction 0.895164861423358 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38451705 chr17:38451705 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3823 0 0 1 0 2 CDC6 chr17:38451608 3'AG 38451608 Downstream 98bp 3747 chr17 38451705 38451705 1 + G A LUSC 38451705 + 38451685 38451725 41 TCGCAAAGCACTGGATGTTTGCAGGTGAGTTACGGCTCTGT TCGCAAAGCACTGGATGTTTACAGGTGAGTTACGGCTCTGT Direct Loss 0.947582430711679 0 NA NA prediction 0.895164861423358 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38451705 chr17:38451705 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3823 0 0 1 0 2 CDC6 chr17:38451708 5'GT 38451708 Upstream 4bp 3748 chr3 119325742 119325742 1 + G C LUSC 119325742 + 119325722 119325762 41 TCGAATCCTAGCTGTGGGCAGCTAGTAGAAGGAAGCAGTGA TCGAATCCTAGCTGTGGGCACCTAGTAGAAGGAAGCAGTGA Direct Loss 0.947572961324681 0 NA NA prediction 0.895145922649361 Functional Loss - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119325742 chr3:119325742 nonsynonymous SNV 0.934 2 21 hm7G_associated_SNPs_3825 0 0 0 1 1 PLA1A chr3:119325822 5'GT 119325822 Upstream 81bp 3749 chr2 113404708 113404708 1 + G A rs4849091 113404708 + 113404688 113404728 41 TACAACTCGACTCAAGGGCTGCTGATGGCCGGCTCAGTCAG TACAACTCGACTCAAGGGCTACTGATGGCCGGCTCAGTCAG Direct Loss 0.94757028217289 0 NA NA prediction 0.895140564345781 Functional Loss - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113404708 chr2:113404708 synonymous SNV . 0 21 hm7G_associated_SNPs_3826 0 0 1 0 1 SLC20A1 chr2:113404739 5'GT 113404739 Upstream 32bp 3750 chr2 27529205 27529205 1 + G A COAD 27529205 + 27529185 27529225 41 GGACCATCGACTTCCAGCCAGGTGAAGGAGGTGGCCGAGGG GGACCATCGACTTCCAGCCAAGTGAAGGAGGTGGCCGAGGG Direct Loss 0.947564914121537 0 NA NA prediction 0.895129828243075 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27529205 chr2:27529205 nonsynonymous SNV 0.918 2 21 hm7G_associated_SNPs_3827 0 0 0 0 1 TRIM54 chr2:27529205 5'GT 27529205 Upstream 1bp 3751 chr4 166220763 166220763 1 + G T BLCA 166220763 + 166220743 166220783 41 ACAGAGCAGCGTATATTAATGAAGAGTGTCCGGACCCGGCT ACAGAGCAGCGTATATTAATTAAGAGTGTCCGGACCCGGCT Direct Loss 0.947561413753587 0 NA NA prediction 0.895122827507175 Functional Loss - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166220763 chr4:166220763 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_3828 0 0 0 0 1 KLHL2 chr4:166220808 5'GT 166220808 Upstream 46bp 3752 chr10 90695041 90695041 1 - C T SKCM 90695041 - 90695021 90695061 41 GTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAATACG GTCCACCTTCCAGCAGATGTAGATCAGCAAACAGGAATACG Direct Loss 0.947555190770782 0 NA NA prediction 0.895110381541564 Functional Loss - ACTA2 ENSG00000107796 CDS Human protein_coding chr10:90695041 chr10:90695041 stopgain 1.000 1 21 hm7G_associated_SNPs_3829 0 0 0 0 1 ACTA2 chr10:90695123 3'AG 90695123 Downstream 83bp 3753 chr3 42733389 42733389 1 + G T UCEC 42733389 + 42733369 42733409 41 CCCAGGTATAACGAGGAGGAGAAGAAATGGGAGGGTGTCCT CCCAGGTATAACGAGGAGGATAAGAAATGGGAGGGTGTCCT Direct Loss 0.947554119890968 0 NA NA prediction 0.895108239781936 Functional Loss - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42733389 chr3:42733389 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_3830 0 0 0 0 1 KLHL40 chr3:42733374 3'AG 42733374 Downstream 16bp 3754 chr22 21330826 21330826 1 + G C KIRP 21330826 + 21330806 21330846 41 GTCGTGGGAGCCGGCTTCCTGGGTGAGAGGTAGTGGGCAGT GTCGTGGGAGCCGGCTTCCTCGGTGAGAGGTAGTGGGCAGT Direct Loss 0.947552108289858 0 NA NA prediction 0.895104216579716 Functional Loss - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21330826 chr22:21330826 synonymous SNV . 0 21 hm7G_associated_SNPs_3831 0 0 1 0 1 AIFM3 chr22:21330827 5'GT 21330827 Upstream 2bp 3755 chr8 118543034 118543034 1 + G T SKCM 118543034 + 118543014 118543054 41 GCCCACCTCGTTTTGCTAGTGAAGAGAGGCGAGAAATTGCT GCCCACCTCGTTTTGCTAGTTAAGAGAGGCGAGAAATTGCT Direct Loss 0.947549341523781 0 NA NA prediction 0.895098683047561 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118543034 chr8:118543034 stopgain 0.998 1 21 hm7G_associated_SNPs_3832 0 0 1 0 2 MED30 chr8:118542962 3'AG 118542962 Downstream 73bp 3756 chr8 118543034 118543034 1 + G T SKCM 118543034 + 118543014 118543054 41 GCCCACCTCGTTTTGCTAGTGAAGAGAGGCGAGAAATTGCT GCCCACCTCGTTTTGCTAGTTAAGAGAGGCGAGAAATTGCT Direct Loss 0.947549341523781 0 NA NA prediction 0.895098683047561 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118543034 chr8:118543034 stopgain 0.998 1 21 hm7G_associated_SNPs_3832 0 0 1 0 2 MED30 chr8:118543066 5'GT 118543066 Upstream 33bp 3757 chr19 54406402 54406402 1 + G T UCEC 54406402 + 54406382 54406422 41 TGCTGTATGAGATGTTGGCAGGACAGGTAAGGGAAGGTGGG TGCTGTATGAGATGTTGGCATGACAGGTAAGGGAAGGTGGG Direct Loss 0.947536103134567 0 NA NA prediction 0.895072206269135 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54406402 chr19:54406402 stopgain 1.000 0 21 hm7G_associated_SNPs_3833 0 0 0 0 2 PRKCG chr19:54406327 3'AG 54406327 Downstream 76bp 3758 chr19 54406402 54406402 1 + G T UCEC 54406402 + 54406382 54406422 41 TGCTGTATGAGATGTTGGCAGGACAGGTAAGGGAAGGTGGG TGCTGTATGAGATGTTGGCATGACAGGTAAGGGAAGGTGGG Direct Loss 0.947536103134567 0 NA NA prediction 0.895072206269135 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54406402 chr19:54406402 stopgain 1.000 0 21 hm7G_associated_SNPs_3833 0 0 0 0 2 PRKCG chr19:54406407 5'GT 54406407 Upstream 6bp 3759 chr2 119748178 119748178 1 + G A SKCM 119748178 + 119748158 119748198 41 ATCTTAGGACTTCAAGGACAGCAAGGAAGAAAAGGAGAATC ATCTTAGGACTTCAAGGACAACAAGGAAGAAAAGGAGAATC Direct Loss 0.947533906381234 0 NA NA prediction 0.895067812762468 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119748178 chr2:119748178 synonymous SNV . 0 21 hm7G_associated_SNPs_3834 0 0 0 0 2 MARCO chr2:119748165 3'AG 119748165 Downstream 14bp 3760 chr2 119748178 119748178 1 + G A SKCM 119748178 + 119748158 119748198 41 ATCTTAGGACTTCAAGGACAGCAAGGAAGAAAAGGAGAATC ATCTTAGGACTTCAAGGACAACAAGGAAGAAAAGGAGAATC Direct Loss 0.947533906381234 0 NA NA prediction 0.895067812762468 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119748178 chr2:119748178 synonymous SNV . 0 21 hm7G_associated_SNPs_3834 0 0 0 0 2 MARCO chr2:119748209 5'GT 119748209 Upstream 32bp 3761 chr12 6978451 6978451 1 + G C LUSC 6978451 + 6978431 6978471 41 CAGAAAGTGGCCCATGCTCTGGCAGAGGGACTCGGAGTAAT CAGAAAGTGGCCCATGCTCTCGCAGAGGGACTCGGAGTAAT Direct Loss 0.947530719786534 0 NA NA prediction 0.895061439573068 Functional Loss - TPI1 ENSG00000111669 CDS Human protein_coding chr12:6978451 chr12:6978451 synonymous SNV . 0 21 hm7G_associated_SNPs_3835 0 0 1 0 1 TPI1 chr12:6978422 3'AG 6978422 Downstream 30bp 3762 chrX 15554480 15554480 1 + G A SKCM 15554480 + 15554460 15554500 41 GCTGATTCCATTGCAGGCATGATCACACGGCTCCGCCACCC GCTGATTCCATTGCAGGCATAATCACACGGCTCCGCCACCC Direct Loss 0.947470903730821 0 NA NA prediction 0.894941807461642 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15554480 chrX:15554480 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3840 0 0 0 0 2 BMX chrX:15554476 3'AG 15554476 Downstream 5bp 3763 chrX 15554480 15554480 1 + G A SKCM 15554480 + 15554460 15554500 41 GCTGATTCCATTGCAGGCATGATCACACGGCTCCGCCACCC GCTGATTCCATTGCAGGCATAATCACACGGCTCCGCCACCC Direct Loss 0.947470903730821 0 NA NA prediction 0.894941807461642 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15554480 chrX:15554480 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3840 0 0 0 0 2 BMX chrX:15554550 5'GT 15554550 Upstream 71bp 3764 chr20 1223271 1223271 1 + G T CESC 1223271 + 1223251 1223291 41 TCTTATATTTAGACATTGCTGAGAAAAGGAAAGGCAAAAAG TCTTATATTTAGACATTGCTTAGAAAAGGAAAGGCAAAAAG Direct Loss 0.947458403160837 0 NA NA prediction 0.894916806321673 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1223271 chr20:1223271 stopgain 0.998 0 21 hm7G_associated_SNPs_3841 0 0 0 0 1 RAD21L1 chr20:1223263 3'AG 1223263 Downstream 9bp 3765 chr17 41577371 41577371 1 + G A rs531749873 41577371 + 41577351 41577391 41 GCAATGATGCAGAGTGCCTTGGCCAAAGAAAGGCGGGAACT GCAATGATGCAGAGTGCCTTAGCCAAAGAAAGGCGGGAACT Direct Loss 0.947442107090058 0 NA NA prediction 0.894884214180116 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41577371 chr17:41577371 synonymous SNV . 0 21 hm7G_associated_SNPs_3843 0 0 1 0 1 DHX8 chr17:41577324 3'AG 41577324 Downstream 48bp 3766 chr22 37699437 37699437 1 + G T SARC 37699437 + 37699417 37699457 41 AGCGACCTGCCCGAGGACCAGCTGCGGGTGAGAGAGGCGCA AGCGACCTGCCCGAGGACCATCTGCGGGTGAGAGAGGCGCA Direct Loss 0.947434362786016 0 NA NA prediction 0.894868725572032 Functional Loss - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37699437 chr22:37699437 nonsynonymous SNV 0.523 2 21 hm7G_associated_SNPs_3844 0 0 0 0 1 CYTH4 chr22:37699443 5'GT 37699443 Upstream 7bp 3767 chr1 151015476 151015476 1 + G A BLCA 151015476 + 151015456 151015496 41 TGGGCACCAGTGAGACAGCTGAAAGGCTGGGCCGAGGTTGT TGGGCACCAGTGAGACAGCTAAAAGGCTGGGCCGAGGTTGT Direct Loss 0.947421303313488 0 NA NA prediction 0.894842606626975 Functional Loss - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015476 chr1:151015476 nonsynonymous SNV 0.978 0 21 hm7G_associated_SNPs_3847 0 0 0 0 1 BNIPL chr1:151015432 3'AG 151015432 Downstream 45bp 3768 chr1 120050171 120050171 1 + G A LUSC 120050171 + 120050151 120050191 41 AGGATCATCCGCCTCTTGGTGAAGGAGAAGGAGCTGAAGGA AGGATCATCCGCCTCTTGGTAAAGGAGAAGGAGCTGAAGGA Direct Loss 0.947420574595456 0 NA NA prediction 0.894841149190911 Functional Loss - HSD3B1 ENSG00000203857 CDS Human protein_coding chr1:120050171 chr1:120050171 synonymous SNV . 0 21 hm7G_associated_SNPs_3848 0 0 0 0 1 HSD3B1 chr1:120050244 5'GT 120050244 Upstream 74bp 3769 chr4 110743627 110743627 1 + G A LUAD 110743627 + 110743607 110743647 41 AGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTA AGGAAGAGGAGGAGGTGGCAAAGGTGGTGGCAGAGGCGGTA Direct Loss 0.947415454516849 0 NA NA prediction 0.894830909033699 Functional Loss - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110743627 chr4:110743627 nonsynonymous SNV 0.991 0 21 hm7G_associated_SNPs_3849 0 0 1 0 1 GAR1 chr4:110743644 5'GT 110743644 Upstream 18bp 3770 chr22 35480397 35480397 1 + G T COAD 35480397 + 35480377 35480417 41 TCTGGTTCCAGAATCAGCGAGCCAAGTGGCGGAAGCAGGAG TCTGGTTCCAGAATCAGCGATCCAAGTGGCGGAAGCAGGAG Direct Loss 0.947408289999815 0 NA NA prediction 0.894816579999629 Functional Loss - ISX ENSG00000175329 CDS Human protein_coding chr22:35480397 chr22:35480397 nonsynonymous SNV 0.453 5 21 hm7G_associated_SNPs_3850 0 0 0 0 2 ISX chr22:35480376 3'AG 35480376 Downstream 22bp 3771 chr22 35480397 35480397 1 + G T COAD 35480397 + 35480377 35480417 41 TCTGGTTCCAGAATCAGCGAGCCAAGTGGCGGAAGCAGGAG TCTGGTTCCAGAATCAGCGATCCAAGTGGCGGAAGCAGGAG Direct Loss 0.947408289999815 0 NA NA prediction 0.894816579999629 Functional Loss - ISX ENSG00000175329 CDS Human protein_coding chr22:35480397 chr22:35480397 nonsynonymous SNV 0.453 5 21 hm7G_associated_SNPs_3850 0 0 0 0 2 ISX chr22:35480492 5'GT 35480492 Upstream 96bp 3772 chr22 43557148 43557148 1 + G T BLCA 43557148 + 43557128 43557168 41 TACACTGGGCAGCTGGCCCTGAACTGGGCATGGCCCCCCAT TACACTGGGCAGCTGGCCCTTAACTGGGCATGGCCCCCCAT Direct Loss 0.947406017079383 0 NA NA prediction 0.894812034158766 Functional Loss - TSPO ENSG00000100300 CDS Human protein_coding chr22:43557148 chr22:43557148 synonymous SNV . 0 21 hm7G_associated_SNPs_3851 0 0 1 0 2 TSPO chr22:43557058 3'AG 43557058 Downstream 91bp 3773 chr22 43557148 43557148 1 + G T BLCA 43557148 + 43557128 43557168 41 TACACTGGGCAGCTGGCCCTGAACTGGGCATGGCCCCCCAT TACACTGGGCAGCTGGCCCTTAACTGGGCATGGCCCCCCAT Direct Loss 0.947406017079383 0 NA NA prediction 0.894812034158766 Functional Loss - TSPO ENSG00000100300 CDS Human protein_coding chr22:43557148 chr22:43557148 synonymous SNV . 0 21 hm7G_associated_SNPs_3851 0 0 1 0 2 TSPO chr22:43557196 5'GT 43557196 Upstream 49bp 3774 chr9 34976576 34976576 1 + G A UCEC 34976576 + 34976556 34976596 41 TTCTGCGTTACCGCCACCAAGCAGCCAAGCGGGGGGACCGT TTCTGCGTTACCGCCACCAAACAGCCAAGCGGGGGGACCGT Direct Loss 0.947404756289692 0 NA NA prediction 0.894809512579383 Functional Loss - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34976576 chr9:34976576 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_3852 0 0 0 0 1 PHF24 chr9:34976532 3'AG 34976532 Downstream 45bp 3775 chr19 41622398 41622398 1 + G T SKCM 41622398 + 41622378 41622418 41 TCCATGTACACAGTGCACCTGGGACCCAGGCGGGTGGTGGT TCCATGTACACAGTGCACCTTGGACCCAGGCGGGTGGTGGT Direct Loss 0.947392555190877 0 NA NA prediction 0.894785110381753 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622398 chr19:41622398 synonymous SNV . 0 21 hm7G_associated_SNPs_3854 0 0 0 0 1 CYP2F1 chr19:41622360 3'AG 41622360 Downstream 39bp 3776 chr11 120097542 120097542 1 + G A LUAD 120097542 + 120097522 120097562 41 CAGAAAAATCCCCGGGCAGTGCGGCAGGCGGAGGAGGTTCG CAGAAAAATCCCCGGGCAGTACGGCAGGCGGAGGAGGTTCG Direct Loss 0.947381081270149 0 NA NA prediction 0.894762162540298 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120097542 chr11:120097542 synonymous SNV . 0 21 hm7G_associated_SNPs_3855 0 0 1 0 1 OAF chr11:120097525 3'AG 120097525 Downstream 18bp 3777 chr19 12781545 12781545 1 + G A UCEC 12781545 + 12781525 12781565 41 TATCCGCTGTTGGGATTGCCGCTCACGGAGGCCTGAGCCAG TATCCGCTGTTGGGATTGCCACTCACGGAGGCCTGAGCCAG Direct Loss 0.947372494105307 0 NA NA prediction 0.894744988210614 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12781545 chr19:12781545 nonsynonymous SNV 0.938 5 21 hm7G_associated_SNPs_3857 0 0 1 1 1 WDR83 chr19:12781509 3'AG 12781509 Downstream 37bp 3778 chr11 67353898 67353898 1 + G T OV 67353898 + 67353878 67353918 41 AACCTGCTGGACTTGCTGCTGATCCATGAGGTCCTAGCCCC AACCTGCTGGACTTGCTGCTTATCCATGAGGTCCTAGCCCC Direct Loss 0.947371142690217 0 NA NA prediction 0.894742285380434 Functional Loss - GSTP1 ENSG00000084207 CDS Human protein_coding chr11:67353898 chr11:67353898 synonymous SNV 0.988 0 21 hm7G_associated_SNPs_3858 0 0 1 0 1 GSTP1 chr11:67353860 3'AG 67353860 Downstream 39bp 3779 chr7 31736665 31736665 1 + G C LUSC 31736665 + 31736645 31736685 41 TCCCTGTTCTTCATAACACTGACCTGGAACAGAAAAAGCCA TCCCTGTTCTTCATAACACTCACCTGGAACAGAAAAAGCCA Direct Loss 0.947356190401542 0 NA NA prediction 0.894712380803083 Functional Loss - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31736665 chr7:31736665 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3860 0 0 0 0 2 PPP1R17 chr7:31736579 3'AG 31736579 Downstream 87bp 3780 chr7 31736665 31736665 1 + G C LUSC 31736665 + 31736645 31736685 41 TCCCTGTTCTTCATAACACTGACCTGGAACAGAAAAAGCCA TCCCTGTTCTTCATAACACTCACCTGGAACAGAAAAAGCCA Direct Loss 0.947356190401542 0 NA NA prediction 0.894712380803083 Functional Loss - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31736665 chr7:31736665 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3860 0 0 0 0 2 PPP1R17 chr7:31736731 5'GT 31736731 Upstream 67bp 3781 chr12 123237453 123237453 1 + G T rs148561884 123237453 + 123237433 123237473 41 CATGTGTTGGTTCAGCTGGCGATAGCGGCGGGAGCGGAGCC CATGTGTTGGTTCAGCTGGCTATAGCGGCGGGAGCGGAGCC Direct Loss 0.947352799369314 0 NA NA prediction 0.894705598738627 Functional Loss - DENR ENSG00000139726 UTR5 Human protein_coding chr12:123237453 chr12:123237453 . . 0 21 hm7G_associated_SNPs_3861 0 0 1 0 1 DENR chr12:123237497 5'GT 123237497 Upstream 45bp 3782 chr9 33270625 33270625 1 + G T LUAD 33270625 + 33270605 33270645 41 AATTGACTCTAAAAAGGTATGAGCAGCAGCGGGACAATCTT AATTGACTCTAAAAAGGTATTAGCAGCAGCGGGACAATCTT Direct Loss 0.947336414957959 0 NA NA prediction 0.894672829915919 Functional Loss - CHMP5 ENSG00000086065 CDS Human protein_coding chr9:33270625 chr9:33270625 stopgain 1.000 1 21 hm7G_associated_SNPs_3862 0 0 1 0 2 CHMP5 chr9:33270621 3'AG 33270621 Downstream 5bp 3783 chr9 33270625 33270625 1 + G T LUAD 33270625 + 33270605 33270645 41 AATTGACTCTAAAAAGGTATGAGCAGCAGCGGGACAATCTT AATTGACTCTAAAAAGGTATTAGCAGCAGCGGGACAATCTT Direct Loss 0.947336414957959 0 NA NA prediction 0.894672829915919 Functional Loss - CHMP5 ENSG00000086065 CDS Human protein_coding chr9:33270625 chr9:33270625 stopgain 1.000 1 21 hm7G_associated_SNPs_3862 0 0 1 0 2 CHMP5 chr9:33270714 5'GT 33270714 Upstream 90bp 3784 chr10 7759679 7759679 1 + G A rs35076349 7759679 + 7759659 7759699 41 GAACTTCACTACCAGGAGGTGAAGTGGAGGAAGCTGGGCTC GAACTTCACTACCAGGAGGTAAAGTGGAGGAAGCTGGGCTC Direct Loss 0.947325985277782 0 NA NA prediction 0.894651970555564 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7759679 chr10:7759679 synonymous SNV . 0 21 hm7G_associated_SNPs_3864 0 0 1 0 2 ITIH2 chr10:7759589 3'AG 7759589 Downstream 91bp 3785 chr10 7759679 7759679 1 + G A rs35076349 7759679 + 7759659 7759699 41 GAACTTCACTACCAGGAGGTGAAGTGGAGGAAGCTGGGCTC GAACTTCACTACCAGGAGGTAAAGTGGAGGAAGCTGGGCTC Direct Loss 0.947325985277782 0 NA NA prediction 0.894651970555564 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7759679 chr10:7759679 synonymous SNV . 0 21 hm7G_associated_SNPs_3864 0 0 1 0 2 ITIH2 chr10:7759751 5'GT 7759751 Upstream 73bp 3786 chr11 122738263 122738263 1 + G C LUAD 122738263 + 122738243 122738283 41 CACATGTGATATGGAAGAAAGGTCAGTGGGCAGGGAACCTG CACATGTGATATGGAAGAAACGTCAGTGGGCAGGGAACCTG Direct Loss 0.947293885379763 0 NA NA prediction 0.894587770759526 Functional Loss - CRTAM ENSG00000109943 CDS Human protein_coding chr11:122738263 chr11:122738263 nonsynonymous SNV 0.259 4 21 hm7G_associated_SNPs_3867 0 0 0 0 1 CRTAM chr11:122738263 5'GT 122738263 Upstream 1bp 3787 chr2 46706748 46706748 1 + G A rs148922746 46706748 + 46706728 46706768 41 GCAGCAGAGGACAGGGAGATGATGGAAGCCCGGGGTGCGGG GCAGCAGAGGACAGGGAGATAATGGAAGCCCGGGGTGCGGG Direct Loss 0.947289597133123 0 NA NA prediction 0.894579194266245 Functional Loss - TMEM247 ENSG00000187600 CDS Human protein_coding chr2:46706748 chr2:46706748 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_3868 0 0 0 0 1 TMEM247 chr2:46706841 5'GT 46706841 Upstream 94bp 3788 chr1 161127443 161127443 1 + G A COAD 161127443 + 161127423 161127463 41 CTACTACTGCCCCAGAAATTGCAGTTCCTGAGCTGGATGGA CTACTACTGCCCCAGAAATTACAGTTCCTGAGCTGGATGGA Direct Loss 0.947275453570316 0 NA NA prediction 0.894550907140632 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127443 chr1:161127443 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3869 0 0 1 0 2 UFC1 chr1:161127407 3'AG 161127407 Downstream 37bp 3789 chr1 161127443 161127443 1 + G A COAD 161127443 + 161127423 161127463 41 CTACTACTGCCCCAGAAATTGCAGTTCCTGAGCTGGATGGA CTACTACTGCCCCAGAAATTACAGTTCCTGAGCTGGATGGA Direct Loss 0.947275453570316 0 NA NA prediction 0.894550907140632 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127443 chr1:161127443 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3869 0 0 1 0 2 UFC1 chr1:161127483 5'GT 161127483 Upstream 41bp 3790 chr14 24648811 24648811 1 + G A LUAD 24648811 + 24648791 24648831 41 GTCCTCCTAGGGCCTGGCCTGAGGTGGAGGCGCCAGAAGCT GTCCTCCTAGGGCCTGGCCTAAGGTGGAGGCGCCAGAAGCT Direct Loss 0.947262525176266 0 NA NA prediction 0.894525050352532 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24648811 chr14:24648811 nonsynonymous SNV 0.354 2 21 hm7G_associated_SNPs_3870 0 0 0 0 1 REC8 chr14:24648801 3'AG 24648801 Downstream 11bp 3791 chr2 74141917 74141917 1 + G C HNSC 74141917 + 74141897 74141937 41 CCTCCCTGGAGAAGAGCTATGAGCTGCCAGATGGGCAGGTT CCTCCCTGGAGAAGAGCTATCAGCTGCCAGATGGGCAGGTT Direct Loss 0.947256835230951 0 NA NA prediction 0.894513670461902 Functional Loss - ACTG2 ENSG00000163017 CDS Human protein_coding chr2:74141917 chr2:74141917 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3871 0 0 0 0 1 ACTG2 chr2:74141998 5'GT 74141998 Upstream 82bp 3792 chr2 219674398 219674398 1 + G T THYM 219674398 + 219674378 219674418 41 CCGCTCTTGGAGCAAGTGATGCGGCAAGAGGGCAAGTACCC CCGCTCTTGGAGCAAGTGATTCGGCAAGAGGGCAAGTACCC Direct Loss 0.947239202533363 0 NA NA prediction 0.894478405066725 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219674398 chr2:219674398 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3874 0 0 1 0 2 CYP27A1 chr2:219674300 3'AG 219674300 Downstream 99bp 3793 chr2 219674398 219674398 1 + G T THYM 219674398 + 219674378 219674418 41 CCGCTCTTGGAGCAAGTGATGCGGCAAGAGGGCAAGTACCC CCGCTCTTGGAGCAAGTGATTCGGCAAGAGGGCAAGTACCC Direct Loss 0.947239202533363 0 NA NA prediction 0.894478405066725 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219674398 chr2:219674398 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3874 0 0 1 0 2 CYP27A1 chr2:219674490 5'GT 219674490 Upstream 93bp 3794 chr21 37444808 37444808 1 + G A rs149755706 37444808 + 37444788 37444828 41 AAAAGCTGCAGCCCAGAGCTGCAGCAGAAGTTCCGCAGTGA AAAAGCTGCAGCCCAGAGCTACAGCAGAAGTTCCGCAGTGA Direct Loss 0.947230718097482 0 NA NA prediction 0.894461436194964 Functional Loss - CBR1 ENSG00000159228 CDS Human protein_coding chr21:37444808 chr21:37444808 synonymous SNV . 0 21 hm7G_associated_SNPs_3875 0 0 0 0 1 CBR1 chr21:37444744 3'AG 37444744 Downstream 65bp 3795 chr17 72308219 72308219 1 + G A rs2279122 72308219 + 72308199 72308239 41 CGGCTGAAGGAGAAGGGTAAGGCGGAGGGCAGGGATGAGGA CGGCTGAAGGAGAAGGGTAAAGCGGAGGGCAGGGATGAGGA Direct Loss 0.94722973522288 0 NA NA prediction 0.894459470445759 Functional Loss - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72308219 chr17:72308219 synonymous SNV . 0 21 hm7G_associated_SNPs_3876 2 0 0 0 2 DNAI2 chr17:72308142 3'AG 72308142 Downstream 78bp 3796 chr17 72308219 72308219 1 + G A rs2279122 72308219 + 72308199 72308239 41 CGGCTGAAGGAGAAGGGTAAGGCGGAGGGCAGGGATGAGGA CGGCTGAAGGAGAAGGGTAAAGCGGAGGGCAGGGATGAGGA Direct Loss 0.94722973522288 0 NA NA prediction 0.894459470445759 Functional Loss - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72308219 chr17:72308219 synonymous SNV . 0 21 hm7G_associated_SNPs_3876 2 0 0 0 2 DNAI2 chr17:72308214 3'AG 72308214 Downstream 6bp 3797 chr7 73609082 73609082 1 + G C LUSC 73609082 + 73609062 73609102 41 CTTCCTCAGGCTTCAGGGATGACTTCTTAGGGGGCAGGGGA CTTCCTCAGGCTTCAGGGATCACTTCTTAGGGGGCAGGGGA Direct Loss 0.947224444368556 0 NA NA prediction 0.894448888737112 Functional Loss - EIF4H ENSG00000106682 CDS Human protein_coding chr7:73609082 chr7:73609082 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3877 0 0 1 0 1 EIF4H chr7:73609071 3'AG 73609071 Downstream 12bp 3798 chr14 74711898 74711898 1 + G A UCEC 74711898 + 74711878 74711918 41 ACCTCCTACCAGCTAGAGGAGCTGGAGAAGGCATTCAACGA ACCTCCTACCAGCTAGAGGAACTGGAGAAGGCATTCAACGA Direct Loss 0.947200411671575 0 NA NA prediction 0.894400823343149 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74711898 chr14:74711898 synonymous SNV . 0 21 hm7G_associated_SNPs_3879 0 0 0 0 2 VSX2 chr14:74711868 3'AG 74711868 Downstream 31bp 3799 chr14 74711898 74711898 1 + G A UCEC 74711898 + 74711878 74711918 41 ACCTCCTACCAGCTAGAGGAGCTGGAGAAGGCATTCAACGA ACCTCCTACCAGCTAGAGGAACTGGAGAAGGCATTCAACGA Direct Loss 0.947200411671575 0 NA NA prediction 0.894400823343149 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74711898 chr14:74711898 synonymous SNV . 0 21 hm7G_associated_SNPs_3879 0 0 0 0 2 VSX2 chr14:74711991 5'GT 74711991 Upstream 94bp 3800 chr3 141327491 141327491 1 + G C LUAD 141327491 + 141327471 141327511 41 TCTGAACGGAAATTGGCTCTGCTGTCAGGAGACTGGTGAAA TCTGAACGGAAATTGGCTCTCCTGTCAGGAGACTGGTGAAA Direct Loss 0.947193702930368 0 NA NA prediction 0.894387405860736 Functional Loss - RASA2 ENSG00000155903 CDS Human protein_coding chr3:141327491 chr3:141327491 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_3880 0 0 1 0 1 RASA2 chr3:141327539 5'GT 141327539 Upstream 49bp 3801 chr16 29790864 29790864 1 + G A rs235636 29790864 + 29790844 29790884 41 CCTATAGTGGAGAGTATGGAGGTGGTGGTGGAAAGCGATTC CCTATAGTGGAGAGTATGGAAGTGGTGGTGGAAAGCGATTC Direct Loss 0.947192479213575 0 NA NA prediction 0.89438495842715 Functional Loss - ZG16 ENSG00000174992 CDS Human protein_coding chr16:29790864 chr16:29790864 nonsynonymous SNV 0.975 0 21 hm7G_associated_SNPs_3881 0 0 0 0 1 ZG16 chr16:29790826 3'AG 29790826 Downstream 39bp 3802 chr10 114044372 114044372 1 + G T SARC 114044372 + 114044352 114044392 41 TATGGATGGGAAGTTCATCAGCTGGCCCTCGGAGGGCTGTG TATGGATGGGAAGTTCATCATCTGGCCCTCGGAGGGCTGTG Direct Loss 0.947186471446016 0 NA NA prediction 0.894372942892032 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114044372 chr10:114044372 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_3882 0 0 0 0 1 TECTB chr10:114044293 3'AG 114044293 Downstream 80bp 3803 chr3 184026274 184026274 1 + G A LUAD 184026274 + 184026254 184026294 41 CACTATGTATTGTATGGGCTGGTGGCTGCCATGCAGCCCCG CACTATGTATTGTATGGGCTAGTGGCTGCCATGCAGCCCCG Direct Loss 0.947172446330747 0 NA NA prediction 0.894344892661494 Functional Loss - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184026274 chr3:184026274 synonymous SNV . 0 21 hm7G_associated_SNPs_3884 0 0 1 0 2 PSMD2 chr3:184026237 3'AG 184026237 Downstream 38bp 3804 chr3 184026274 184026274 1 + G A LUAD 184026274 + 184026254 184026294 41 CACTATGTATTGTATGGGCTGGTGGCTGCCATGCAGCCCCG CACTATGTATTGTATGGGCTAGTGGCTGCCATGCAGCCCCG Direct Loss 0.947172446330747 0 NA NA prediction 0.894344892661494 Functional Loss - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184026274 chr3:184026274 synonymous SNV . 0 21 hm7G_associated_SNPs_3884 0 0 1 0 2 PSMD2 chr3:184026355 5'GT 184026355 Upstream 82bp 3805 chrX 51644724 51644724 1 + G T SARC 51644724 + 51644704 51644744 41 AGGCCTTGGATGCTCTGGATGCTGCTGCAGCTGAGGCCGAA AGGCCTTGGATGCTCTGGATTCTGCTGCAGCTGAGGCCGAA Direct Loss 0.947165529635532 0 NA NA prediction 0.894331059271064 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51644724 chrX:51644724 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3886 0 0 1 0 1 MAGED1 chrX:51644649 3'AG 51644649 Downstream 76bp 3806 chr3 129266436 129266436 1 + G A CESC 129266436 + 129266416 129266456 41 CTCCGCTTCAAGTACCTGCTGAAGCAGGCGCTGGCCACTGG CTCCGCTTCAAGTACCTGCTAAAGCAGGCGCTGGCCACTGG Direct Loss 0.947127928439774 0 NA NA prediction 0.894255856879548 Functional Loss - H1FOO ENSG00000178804 CDS Human protein_coding chr3:129266436 chr3:129266436 synonymous SNV . 0 21 hm7G_associated_SNPs_3896 0 0 0 0 1 H1FOO chr3:129266523 5'GT 129266523 Upstream 88bp 3807 chr17 4685899 4685899 1 + G A UCEC 4685899 + 4685879 4685919 41 AATGGACCCAGATGCTTAATGAACGGCGAGTGGGGCTACCA AATGGACCCAGATGCTTAATAAACGGCGAGTGGGGCTACCA Direct Loss 0.947127413229552 0 NA NA prediction 0.894254826459105 Functional Loss - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685899 chr17:4685899 nonsynonymous SNV 0.002 0 21 hm7G_associated_SNPs_3897 0 0 1 0 1 TM4SF5 chr17:4685934 5'GT 4685934 Upstream 36bp 3808 chrX 72673362 72673362 1 + G A UCEC 72673362 + 72673342 72673382 41 TCTCCTAACAGGGAAAACCAGGACAAAAGAAAAGTATCGTG TCTCCTAACAGGGAAAACCAAGACAAAAGAAAAGTATCGTG Direct Loss 0.947125490127039 0 NA NA prediction 0.894250980254077 Functional Loss - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72673362 chrX:72673362 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3899 0 0 0 0 1 CDX4 chrX:72673353 3'AG 72673353 Downstream 10bp 3809 chr19 54650352 54650352 1 + G C BRCA 54650352 + 54650332 54650372 41 CTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCC CTCAGGAAAACTCTGAAGATCATAAGAAGAGGGGACGTTCC Direct Loss 0.947105787951374 0 NA NA prediction 0.894211575902748 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54650352 chr19:54650352 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3900 0 0 1 0 2 CNOT3 chr19:54650337 3'AG 54650337 Downstream 16bp 3810 chr19 54650352 54650352 1 + G C BRCA 54650352 + 54650332 54650372 41 CTCAGGAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCC CTCAGGAAAACTCTGAAGATCATAAGAAGAGGGGACGTTCC Direct Loss 0.947105787951374 0 NA NA prediction 0.894211575902748 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54650352 chr19:54650352 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3900 0 0 1 0 2 CNOT3 chr19:54650393 5'GT 54650393 Upstream 42bp 3811 chr2 26654775 26654775 1 + G A OV 26654775 + 26654755 26654795 41 GAGTATCTTAACAACCGCATGAAGAAAGTAGAGGACTATGA GAGTATCTTAACAACCGCATAAAGAAAGTAGAGGACTATGA Direct Loss 0.947081639087129 0 NA NA prediction 0.894163278174258 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26654775 chr2:26654775 nonsynonymous SNV 0.925 0 21 hm7G_associated_SNPs_3902 0 0 0 0 2 DRC1 chr2:26654752 3'AG 26654752 Downstream 24bp 3812 chr2 26654775 26654775 1 + G A OV 26654775 + 26654755 26654795 41 GAGTATCTTAACAACCGCATGAAGAAAGTAGAGGACTATGA GAGTATCTTAACAACCGCATAAAGAAAGTAGAGGACTATGA Direct Loss 0.947081639087129 0 NA NA prediction 0.894163278174258 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26654775 chr2:26654775 nonsynonymous SNV 0.925 0 21 hm7G_associated_SNPs_3902 0 0 0 0 2 DRC1 chr2:26654874 5'GT 26654874 Upstream 100bp 3813 chr17 28506198 28506198 1 + G C HNSC 28506198 + 28506178 28506218 41 AGAAAATACAGAGAGAACGAGAAATGGAAAAGGGGGAGTTT AGAAAATACAGAGAGAACGACAAATGGAAAAGGGGGAGTTT Direct Loss 0.947064458528878 0 NA NA prediction 0.894128917057756 Functional Loss - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28506198 chr17:28506198 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3903 0 0 1 0 1 NSRP1 chr17:28506108 3'AG 28506108 Downstream 91bp 3814 chr19 6836572 6836572 1 + G A BLCA 6836572 + 6836552 6836592 41 GGCTGAGGCTGAACAGAACTGGTGGGAGGTACAGGCTGGGG GGCTGAGGCTGAACAGAACTAGTGGGAGGTACAGGCTGGGG Direct Loss 0.947052525040861 0 NA NA prediction 0.894105050081722 Functional Loss - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6836572 chr19:6836572 stopgain 1.000 1 21 hm7G_associated_SNPs_3905 0 0 1 0 1 VAV1 chr19:6836579 5'GT 6836579 Upstream 8bp 3815 chr2 29368134 29368134 1 + G A COAD 29368134 + 29368114 29368154 41 TTTGTGGAACAACTGAATTTGCAAGTGGGCAGTGGGCTGGC TTTGTGGAACAACTGAATTTACAAGTGGGCAGTGGGCTGGC Direct Loss 0.947036649388089 0 NA NA prediction 0.894073298776177 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29368134 chr2:29368134 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3907 0 0 1 0 2 CLIP4 chr2:29368098 3'AG 29368098 Downstream 37bp 3816 chr2 29368134 29368134 1 + G A COAD 29368134 + 29368114 29368154 41 TTTGTGGAACAACTGAATTTGCAAGTGGGCAGTGGGCTGGC TTTGTGGAACAACTGAATTTACAAGTGGGCAGTGGGCTGGC Direct Loss 0.947036649388089 0 NA NA prediction 0.894073298776177 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29368134 chr2:29368134 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_3907 0 0 1 0 2 CLIP4 chr2:29368233 5'GT 29368233 Upstream 100bp 3817 chr1 6305225 6305225 1 + G A rs371128617 6305225 + 6305205 6305245 41 TCGGGCTTCCGCAGCTGCCTGCCCGGCGTGAGCCAGCTCCT TCGGGCTTCCGCAGCTGCCTACCCGGCGTGAGCCAGCTCCT Direct Loss 0.9470199719352 0 NA NA prediction 0.8940399438704 Functional Loss - HES3 ENSG00000173673 CDS Human protein_coding chr1:6305225 chr1:6305225 synonymous SNV . 0 21 hm7G_associated_SNPs_3909 0 0 0 0 1 HES3 chr1:6305170 3'AG 6305170 Downstream 56bp 3818 chr1 62913026 62913026 1 + G A UCEC 62913026 + 62913006 62913046 41 TTTTAGGTGAAGAACAAATTGGTTTTGAGCTAGTGGAGAAA TTTTAGGTGAAGAACAAATTAGTTTTGAGCTAGTGGAGAAA Direct Loss 0.947019376623704 0 NA NA prediction 0.894038753247408 Functional Loss - USP1 ENSG00000162607 CDS Human protein_coding chr1:62913026 chr1:62913026 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_3910 0 0 1 0 1 USP1 chr1:62913012 3'AG 62913012 Downstream 15bp 3819 chr22 40757346 40757346 1 + G A GBM 40757346 + 40757326 40757366 41 CCTTTGAAAAACAGCAGATTGGTGAGTGCTGTGTAGAGACC CCTTTGAAAAACAGCAGATTAGTGAGTGCTGTGTAGAGACC Direct Loss 0.947013633697489 0 NA NA prediction 0.894027267394977 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40757346 chr22:40757346 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_3911 0 0 1 0 2 ADSL chr22:40757277 3'AG 40757277 Downstream 70bp 3820 chr22 40757346 40757346 1 + G A GBM 40757346 + 40757326 40757366 41 CCTTTGAAAAACAGCAGATTGGTGAGTGCTGTGTAGAGACC CCTTTGAAAAACAGCAGATTAGTGAGTGCTGTGTAGAGACC Direct Loss 0.947013633697489 0 NA NA prediction 0.894027267394977 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40757346 chr22:40757346 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_3911 0 0 1 0 2 ADSL chr22:40757346 5'GT 40757346 Upstream 1bp 3821 chr19 33585099 33585099 1 + G T SARC 33585099 + 33585079 33585119 41 TTATCTGTTGGTTTCGAATTGCTAAGAAAAATGGGTTGGAA TTATCTGTTGGTTTCGAATTTCTAAGAAAAATGGGTTGGAA Direct Loss 0.947005309477881 0 NA NA prediction 0.894010618955763 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33585099 chr19:33585099 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3913 0 0 0 0 2 GPATCH1 chr19:33585078 3'AG 33585078 Downstream 22bp 3822 chr19 33585099 33585099 1 + G T SARC 33585099 + 33585079 33585119 41 TTATCTGTTGGTTTCGAATTGCTAAGAAAAATGGGTTGGAA TTATCTGTTGGTTTCGAATTTCTAAGAAAAATGGGTTGGAA Direct Loss 0.947005309477881 0 NA NA prediction 0.894010618955763 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33585099 chr19:33585099 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3913 0 0 0 0 2 GPATCH1 chr19:33585175 5'GT 33585175 Upstream 77bp 3823 chr21 47421294 47421294 1 + G A rs375448277 47421294 + 47421274 47421314 41 CGGCTGAGCCGGGACGAGCTGGTCAAGGTGAGGCCTCGCCC CGGCTGAGCCGGGACGAGCTAGTCAAGGTGAGGCCTCGCCC Direct Loss 0.947004316759989 0 NA NA prediction 0.894008633519979 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47421294 chr21:47421294 synonymous SNV . 0 21 hm7G_associated_SNPs_3914 0 0 1 0 1 COL6A1 chr21:47421300 5'GT 47421300 Upstream 7bp 3824 chr2 170462551 170462551 1 + G T DLBC 170462551 + 170462531 170462571 41 ATTTTTTTATCTCTATAGGTGAAAAGGGGACCGGGAAATCA ATTTTTTTATCTCTATAGGTTAAAAGGGGACCGGGAAATCA Direct Loss 0.946994907777148 0 NA NA prediction 0.893989815554296 Functional Loss - PPIG ENSG00000138398 CDS Human protein_coding chr2:170462551 chr2:170462551 stopgain 0.992 1 21 hm7G_associated_SNPs_3915 0 0 1 0 1 PPIG chr2:170462549 3'AG 170462549 Downstream 3bp 3825 chr10 5495482 5495482 1 + G A BRCA 5495482 + 5495462 5495502 41 TAGGAGAAGCAACCAAGCCTGATGGAACAGTGGAGCAGATT TAGGAGAAGCAACCAAGCCTAATGGAACAGTGGAGCAGATT Direct Loss 0.946971338659498 0 NA NA prediction 0.893942677318996 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5495482 chr10:5495482 nonsynonymous SNV 0.955 0 21 hm7G_associated_SNPs_3917 0 0 1 0 2 NET1 chr10:5495447 3'AG 5495447 Downstream 36bp 3826 chr10 5495482 5495482 1 + G A BRCA 5495482 + 5495462 5495502 41 TAGGAGAAGCAACCAAGCCTGATGGAACAGTGGAGCAGATT TAGGAGAAGCAACCAAGCCTAATGGAACAGTGGAGCAGATT Direct Loss 0.946971338659498 0 NA NA prediction 0.893942677318996 Functional Loss - NET1 ENSG00000173848 CDS Human protein_coding chr10:5495482 chr10:5495482 nonsynonymous SNV 0.955 0 21 hm7G_associated_SNPs_3917 0 0 1 0 2 NET1 chr10:5495523 5'GT 5495523 Upstream 42bp 3827 chr11 67378662 67378662 1 + G C BLCA 67378662 + 67378642 67378682 41 TCTGTGCCCTTGAAAGAACTGATTGAGAAGCATGCTGGTAA TCTGTGCCCTTGAAAGAACTCATTGAGAAGCATGCTGGTAA Direct Loss 0.946966862380688 0 NA NA prediction 0.893933724761376 Functional Loss - NDUFV1 ENSG00000167792 CDS Human protein_coding chr11:67378662 chr11:67378662 synonymous SNV . 0 21 hm7G_associated_SNPs_3918 0 0 1 0 1 NDUFV1 chr11:67378678 5'GT 67378678 Upstream 17bp 3828 chr1 29030747 29030747 1 + G A COAD 29030747 + 29030727 29030767 41 GGAATAGCTGATGTAGGGCTGATGGAAGAGGTTGTCTGCAA GGAATAGCTGATGTAGGGCTAATGGAAGAGGTTGTCTGCAA Direct Loss 0.946958152297233 0 NA NA prediction 0.893916304594466 Functional Loss - GMEB1 ENSG00000162419 CDS Human protein_coding chr1:29030747 chr1:29030747 synonymous SNV . 0 21 hm7G_associated_SNPs_3919 0 0 1 0 2 GMEB1 chr1:29030704 3'AG 29030704 Downstream 44bp 3829 chr1 29030747 29030747 1 + G A COAD 29030747 + 29030727 29030767 41 GGAATAGCTGATGTAGGGCTGATGGAAGAGGTTGTCTGCAA GGAATAGCTGATGTAGGGCTAATGGAAGAGGTTGTCTGCAA Direct Loss 0.946958152297233 0 NA NA prediction 0.893916304594466 Functional Loss - GMEB1 ENSG00000162419 CDS Human protein_coding chr1:29030747 chr1:29030747 synonymous SNV . 0 21 hm7G_associated_SNPs_3919 0 0 1 0 2 GMEB1 chr1:29030841 5'GT 29030841 Upstream 95bp 3830 chr2 131127704 131127704 1 + G T rs150954637 131127704 + 131127684 131127724 41 CCTGACCACATGCTCGCCATGGTGGAGGAAGCCCGTCGCCT CCTGACCACATGCTCGCCATTGTGGAGGAAGCCCGTCGCCT Direct Loss 0.946940068815056 0 NA NA prediction 0.893880137630113 Functional Loss - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131127704 chr2:131127704 nonsynonymous SNV 0.958 3 21 hm7G_associated_SNPs_3923 0 0 1 0 2 PTPN18 chr2:131127621 3'AG 131127621 Downstream 84bp 3831 chr2 131127704 131127704 1 + G T rs150954637 131127704 + 131127684 131127724 41 CCTGACCACATGCTCGCCATGGTGGAGGAAGCCCGTCGCCT CCTGACCACATGCTCGCCATTGTGGAGGAAGCCCGTCGCCT Direct Loss 0.946940068815056 0 NA NA prediction 0.893880137630113 Functional Loss - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131127704 chr2:131127704 nonsynonymous SNV 0.958 3 21 hm7G_associated_SNPs_3923 0 0 1 0 2 PTPN18 chr2:131127763 5'GT 131127763 Upstream 60bp 3832 chr19 4154994 4154994 1 + G A SKCM 4154994 + 4154974 4155014 41 ATCCTGAGACACGTGGAGCTGGGCGAGGGCTGGGGTCACGT ATCCTGAGACACGTGGAGCTAGGCGAGGGCTGGGGTCACGT Direct Loss 0.94693629154726 0 NA NA prediction 0.89387258309452 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4154994 chr19:4154994 synonymous SNV . 0 21 hm7G_associated_SNPs_3924 0 0 1 0 2 CREB3L3 chr19:4154896 3'AG 4154896 Downstream 99bp 3833 chr19 4154994 4154994 1 + G A SKCM 4154994 + 4154974 4155014 41 ATCCTGAGACACGTGGAGCTGGGCGAGGGCTGGGGTCACGT ATCCTGAGACACGTGGAGCTAGGCGAGGGCTGGGGTCACGT Direct Loss 0.94693629154726 0 NA NA prediction 0.89387258309452 Functional Loss - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4154994 chr19:4154994 synonymous SNV . 0 21 hm7G_associated_SNPs_3924 0 0 1 0 2 CREB3L3 chr19:4155024 5'GT 4155024 Upstream 31bp 3834 chr10 70760225 70760225 1 + G A UCEC 70760225 + 70760205 70760245 41 AAAGAGAAGAAATTGAAACTGCACAGGCTTACCTAGAGTCA AAAGAGAAGAAATTGAAACTACACAGGCTTACCTAGAGTCA Direct Loss 0.946933553097824 0 NA NA prediction 0.893867106195649 Functional Loss - KIF1BP ENSG00000198954 CDS Human protein_coding chr10:70760225 chr10:70760225 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3925 0 0 1 0 2 KIF1BP chr10:70760180 3'AG 70760180 Downstream 46bp 3835 chr10 70760225 70760225 1 + G A UCEC 70760225 + 70760205 70760245 41 AAAGAGAAGAAATTGAAACTGCACAGGCTTACCTAGAGTCA AAAGAGAAGAAATTGAAACTACACAGGCTTACCTAGAGTCA Direct Loss 0.946933553097824 0 NA NA prediction 0.893867106195649 Functional Loss - KIF1BP ENSG00000198954 CDS Human protein_coding chr10:70760225 chr10:70760225 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3925 0 0 1 0 2 KIF1BP chr10:70760278 5'GT 70760278 Upstream 54bp 3836 chr20 32438855 32438855 1 + G C LUSC 32438855 + 32438835 32438875 41 TTTCGAAACCTGTAGGGTTTGGAGAAGAGTTTGACGAGGTG TTTCGAAACCTGTAGGGTTTCGAGAAGAGTTTGACGAGGTG Direct Loss 0.946922411443118 0 NA NA prediction 0.893844822886235 Functional Loss - CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32438855 chr20:32438855 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3926 0 0 1 0 2 CHMP4B chr20:32438758 3'AG 32438758 Downstream 98bp 3837 chr20 32438855 32438855 1 + G C LUSC 32438855 + 32438835 32438875 41 TTTCGAAACCTGTAGGGTTTGGAGAAGAGTTTGACGAGGTG TTTCGAAACCTGTAGGGTTTCGAGAAGAGTTTGACGAGGTG Direct Loss 0.946922411443118 0 NA NA prediction 0.893844822886235 Functional Loss - CHMP4B ENSG00000101421 CDS Human protein_coding chr20:32438855 chr20:32438855 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3926 0 0 1 0 2 CHMP4B chr20:32438872 5'GT 32438872 Upstream 18bp 3838 chr10 45430156 45430156 1 + G T UCEC 45430156 + 45430136 45430176 41 TTCCTTCTGAGCAAGCGGAAGAAGAGGAAAGCTGCCCCCGA TTCCTTCTGAGCAAGCGGAATAAGAGGAAAGCTGCCCCCGA Direct Loss 0.946912503681611 0 NA NA prediction 0.893825007363222 Functional Loss - TMEM72 ENSG00000187783 CDS Human protein_coding chr10:45430156 chr10:45430156 nonsynonymous SNV 0.657 1 21 hm7G_associated_SNPs_3927 0 0 0 0 1 TMEM72 chr10:45430104 3'AG 45430104 Downstream 53bp 3839 chr5 140077653 140077653 1 + G A UCEC 140077653 + 140077633 140077673 41 CAAGATCCGTTCAGTGGCCAGCAGAGAGGAGGTGAGTGGCG CAAGATCCGTTCAGTGGCCAACAGAGAGGAGGTGAGTGGCG Direct Loss 0.946909346964081 0 NA NA prediction 0.893818693928162 Functional Loss - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140077653 chr5:140077653 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3928 0 0 1 0 1 HARS2 chr5:140077663 5'GT 140077663 Upstream 11bp 3840 chr4 71503549 71503549 1 + G A SKCM 71503549 + 71503529 71503569 41 GACGCCCACCAATCAGCAATGAAGAAGGGGGGGTAAGTACA GACGCCCACCAATCAGCAATAAAGAAGGGGGGGTAAGTACA Direct Loss 0.946903898303624 0 NA NA prediction 0.893807796607248 Functional Loss - ENAM ENSG00000132464 CDS Human protein_coding chr4:71503549 chr4:71503549 nonsynonymous SNV 0.958 4 21 hm7G_associated_SNPs_3929 0 0 0 0 2 ENAM chr4:71503507 3'AG 71503507 Downstream 43bp 3841 chr4 71503549 71503549 1 + G A SKCM 71503549 + 71503529 71503569 41 GACGCCCACCAATCAGCAATGAAGAAGGGGGGGTAAGTACA GACGCCCACCAATCAGCAATAAAGAAGGGGGGGTAAGTACA Direct Loss 0.946903898303624 0 NA NA prediction 0.893807796607248 Functional Loss - ENAM ENSG00000132464 CDS Human protein_coding chr4:71503549 chr4:71503549 nonsynonymous SNV 0.958 4 21 hm7G_associated_SNPs_3929 0 0 0 0 2 ENAM chr4:71503560 5'GT 71503560 Upstream 12bp 3842 chr2 178981066 178981066 1 + G A LUAD 178981066 + 178981046 178981086 41 CTTACAAGAATCTTTGTTATGATACCAAAGTCCTACACAGA CTTACAAGAATCTTTGTTATAATACCAAAGTCCTACACAGA Direct Loss 0.946900040053951 0 NA NA prediction 0.893800080107902 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178981066 chr2:178981066 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_3930 0 0 1 0 2 RBM45 chr2:178980989 3'AG 178980989 Downstream 78bp 3843 chr2 178981066 178981066 1 + G A LUAD 178981066 + 178981046 178981086 41 CTTACAAGAATCTTTGTTATGATACCAAAGTCCTACACAGA CTTACAAGAATCTTTGTTATAATACCAAAGTCCTACACAGA Direct Loss 0.946900040053951 0 NA NA prediction 0.893800080107902 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178981066 chr2:178981066 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_3930 0 0 1 0 2 RBM45 chr2:178981111 5'GT 178981111 Upstream 46bp 3844 chr11 124564208 124564208 1 + G A BLCA 124564208 + 124564188 124564228 41 TTTCGATGAAGGACTCTTCTGAGGAAGATAAGGAAAAAGAA TTTCGATGAAGGACTCTTCTAAGGAAGATAAGGAAAAAGAA Direct Loss 0.946897675322431 0 NA NA prediction 0.893795350644863 Functional Loss - SPA17 ENSG00000064199 CDS Human protein_coding chr11:124564208 chr11:124564208 nonsynonymous SNV 0.831 0 21 hm7G_associated_SNPs_3931 0 0 0 0 1 SPA17 chr11:124564199 3'AG 124564199 Downstream 10bp 3845 chr1 78481784 78481784 1 + G T UCEC 78481784 + 78481764 78481804 41 GATATTGTGAAACCCGGAATGAGGAGAAGAATTATTGGATA GATATTGTGAAACCCGGAATTAGGAGAAGAATTATTGGATA Direct Loss 0.946882681242646 0 NA NA prediction 0.893765362485292 Functional Loss - DNAJB4 ENSG00000162616 CDS Human protein_coding chr1:78481784 chr1:78481784 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3936 0 0 1 0 1 DNAJB4 chr1:78481698 3'AG 78481698 Downstream 87bp 3846 chr1 1847952 1847952 1 + G A rs140177117 1847952 + 1847932 1847972 41 TGTTCGACGAAGAGGGCAACGGGGAGGTGAAGACGGGGGAG TGTTCGACGAAGAGGGCAACAGGGAGGTGAAGACGGGGGAG Direct Loss 0.946855816226007 0 NA NA prediction 0.893711632452013 Functional Loss - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1847952 chr1:1847952 nonsynonymous SNV 0.123 3 21 hm7G_associated_SNPs_3937 0 0 0 0 1 CALML6 chr1:1847880 3'AG 1847880 Downstream 73bp 3847 chrX 54585000 54585000 1 + G A UCEC 54585000 + 54584980 54585020 41 GTGGACCGCCGCTCAGTGCTGCAGAGGATCATGGAGACGGA GTGGACCGCCGCTCAGTGCTACAGAGGATCATGGAGACGGA Direct Loss 0.946834625889499 0 NA NA prediction 0.893669251778998 Functional Loss - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54585000 chrX:54585000 synonymous SNV . 0 21 hm7G_associated_SNPs_3940 0 0 1 0 1 GNL3L chrX:54585088 5'GT 54585088 Upstream 89bp 3848 chr19 34991053 34991053 1 + G T PAAD 34991053 + 34991033 34991073 41 GGACTGCGGGCTGCAGCTGAGCGGGGAGGAGGGACGCCGTT GGACTGCGGGCTGCAGCTGATCGGGGAGGAGGGACGCCGTT Direct Loss 0.946831209434367 0 NA NA prediction 0.893662418868734 Functional Loss - WTIP ENSG00000142279 CDS Human protein_coding chr19:34991053 chr19:34991053 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_3942 0 0 1 0 1 WTIP chr19:34991034 3'AG 34991034 Downstream 20bp 3849 chr2 223797991 223797991 1 + G T LUAD 223797991 + 223797971 223798011 41 TAGATAACATTTGTGCATATGCAAACAGGTAAGAACGTGGA TAGATAACATTTGTGCATATTCAAACAGGTAAGAACGTGGA Direct Loss 0.946814702606491 0 NA NA prediction 0.893629405212983 Functional Loss - ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223797991 chr2:223797991 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_3943 0 0 1 0 1 ACSL3 chr2:223797998 5'GT 223797998 Upstream 8bp 3850 chr11 44640219 44640219 1 + G A UCEC 44640219 + 44640199 44640239 41 GAGAAGGTGCAGGCGTGGCTGCAGGAGAACCTGGGCATCAT GAGAAGGTGCAGGCGTGGCTACAGGAGAACCTGGGCATCAT Direct Loss 0.946787779354542 0 NA NA prediction 0.893575558709084 Functional Loss - CD82 ENSG00000085117 CDS Human protein_coding chr11:44640219 chr11:44640219 synonymous SNV . 0 21 hm7G_associated_SNPs_3944 0 0 0 0 2 CD82 chr11:44640190 3'AG 44640190 Downstream 30bp 3851 chr11 44640219 44640219 1 + G A UCEC 44640219 + 44640199 44640239 41 GAGAAGGTGCAGGCGTGGCTGCAGGAGAACCTGGGCATCAT GAGAAGGTGCAGGCGTGGCTACAGGAGAACCTGGGCATCAT Direct Loss 0.946787779354542 0 NA NA prediction 0.893575558709084 Functional Loss - CD82 ENSG00000085117 CDS Human protein_coding chr11:44640219 chr11:44640219 synonymous SNV . 0 21 hm7G_associated_SNPs_3944 0 0 0 0 2 CD82 chr11:44640273 5'GT 44640273 Upstream 55bp 3852 chr15 45545416 45545416 1 + G A SKCM 45545416 + 45545396 45545436 41 AGTTGAGGAGAACAGGAGATGGAGAAAGCAAGTGGAAGACA AGTTGAGGAGAACAGGAGATAGAGAAAGCAAGTGGAAGACA Direct Loss 0.946786130732808 0 NA NA prediction 0.893572261465615 Functional Loss - SLC28A2 ENSG00000137860 CDS Human antisense chr15:45545416 chr15:45545416 nonsynonymous SNV 0.901 1 21 hm7G_associated_SNPs_3945 0 0 0 0 2 LOC101928414 chr15:45545398 3'AG 45545398 Downstream 19bp 3853 chr15 45545416 45545416 1 + G A SKCM 45545416 + 45545396 45545436 41 AGTTGAGGAGAACAGGAGATGGAGAAAGCAAGTGGAAGACA AGTTGAGGAGAACAGGAGATAGAGAAAGCAAGTGGAAGACA Direct Loss 0.946786130732808 0 NA NA prediction 0.893572261465615 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45545416 chr15:45545416 nonsynonymous SNV 0.901 1 21 hm7G_associated_SNPs_3945 0 0 0 0 2 SLC28A2 chr15:45545494 5'GT 45545494 Upstream 79bp 3854 chr16 2028390 2028390 1 + G T SKCM 2028390 + 2028370 2028410 41 GCCCAGGCCGTGCTGGGTGTGCTCTTGAGGCGAGAGGCCCC GCCCAGGCCGTGCTGGGTGTTCTCTTGAGGCGAGAGGCCCC Direct Loss 0.946763377704682 0 NA NA prediction 0.893526755409365 Functional Loss - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2028390 chr16:2028390 synonymous SNV . 0 21 hm7G_associated_SNPs_3946 0 0 1 1 3 TBL3 chr16:2028314 3'AG 2028314 Downstream 77bp 3855 chr16 2028390 2028390 1 + G T SKCM 2028390 + 2028370 2028410 41 GCCCAGGCCGTGCTGGGTGTGCTCTTGAGGCGAGAGGCCCC GCCCAGGCCGTGCTGGGTGTTCTCTTGAGGCGAGAGGCCCC Direct Loss 0.946763377704682 0 NA NA prediction 0.893526755409365 Functional Loss - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2028390 chr16:2028390 synonymous SNV . 0 21 hm7G_associated_SNPs_3946 0 0 1 1 3 TBL3 chr16:2028316 3'AG 2028316 Downstream 75bp 3856 chr16 2028390 2028390 1 + G T SKCM 2028390 + 2028370 2028410 41 GCCCAGGCCGTGCTGGGTGTGCTCTTGAGGCGAGAGGCCCC GCCCAGGCCGTGCTGGGTGTTCTCTTGAGGCGAGAGGCCCC Direct Loss 0.946763377704682 0 NA NA prediction 0.893526755409365 Functional Loss - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2028390 chr16:2028390 synonymous SNV . 0 21 hm7G_associated_SNPs_3946 0 0 1 1 3 TBL3 chr16:2028472 5'GT 2028472 Upstream 83bp 3857 chr12 27116335 27116335 1 + G A CESC 27116335 + 27116315 27116355 41 CAGTAATGAGGAAAGCCATTGAAATTGACGAGCAACAGGGT CAGTAATGAGGAAAGCCATTAAAATTGACGAGCAACAGGGT Direct Loss 0.946762418007384 0 NA NA prediction 0.893524836014767 Functional Loss - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27116335 chr12:27116335 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3947 0 0 1 0 2 FGFR1OP2 chr12:27116275 3'AG 27116275 Downstream 61bp 3858 chr12 27116335 27116335 1 + G A CESC 27116335 + 27116315 27116355 41 CAGTAATGAGGAAAGCCATTGAAATTGACGAGCAACAGGGT CAGTAATGAGGAAAGCCATTAAAATTGACGAGCAACAGGGT Direct Loss 0.946762418007384 0 NA NA prediction 0.893524836014767 Functional Loss - FGFR1OP2 ENSG00000111790 CDS Human protein_coding chr12:27116335 chr12:27116335 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3947 0 0 1 0 2 FGFR1OP2 chr12:27116388 5'GT 27116388 Upstream 54bp 3859 chr15 63594572 63594572 1 + G A UCEC 63594572 + 63594552 63594592 41 ACGCTGGTCATTATCTTGCTGCATGTATTCTGGGGCATTGT ACGCTGGTCATTATCTTGCTACATGTATTCTGGGGCATTGT Direct Loss 0.946750092863341 0 NA NA prediction 0.893500185726683 Functional Loss - APH1B ENSG00000138613 CDS Human protein_coding chr15:63594572 chr15:63594572 synonymous SNV . 0 21 hm7G_associated_SNPs_3949 0 0 0 0 2 APH1B chr15:63594544 3'AG 63594544 Downstream 29bp 3860 chr15 63594572 63594572 1 + G A UCEC 63594572 + 63594552 63594592 41 ACGCTGGTCATTATCTTGCTGCATGTATTCTGGGGCATTGT ACGCTGGTCATTATCTTGCTACATGTATTCTGGGGCATTGT Direct Loss 0.946750092863341 0 NA NA prediction 0.893500185726683 Functional Loss - APH1B ENSG00000138613 CDS Human protein_coding chr15:63594572 chr15:63594572 synonymous SNV . 0 21 hm7G_associated_SNPs_3949 0 0 0 0 2 APH1B chr15:63594671 5'GT 63594671 Upstream 100bp 3861 chr12 67703715 67703715 1 + G A BLCA 67703715 + 67703695 67703735 41 ACTTTGGAAGACCCAGATTTGAATGTGAGAAGAGTAGCCTT ACTTTGGAAGACCCAGATTTAAATGTGAGAAGAGTAGCCTT Direct Loss 0.946735057474944 0 NA NA prediction 0.893470114949888 Functional Loss - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67703715 chr12:67703715 synonymous SNV . 0 21 hm7G_associated_SNPs_3950 0 0 1 0 1 CAND1 chr12:67703681 3'AG 67703681 Downstream 35bp 3862 chr14 24114410 24114410 1 + G T UCEC 24114410 + 24114390 24114430 41 CCTGTGCTCTCCAGATGCCAGCTACGTCAACGGGGAGAACA CCTGTGCTCTCCAGATGCCATCTACGTCAACGGGGAGAACA Direct Loss 0.946728588208321 0 NA NA prediction 0.893457176416641 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24114410 chr14:24114410 nonsynonymous SNV 0.938 2 21 hm7G_associated_SNPs_3951 0 0 1 0 1 DHRS2 chr14:24114351 3'AG 24114351 Downstream 60bp 3863 chr5 170876194 170876194 1 + G T CESC 170876194 + 170876174 170876214 41 ACCTTCGGTAGTCAAGTCCGGATCAAGGGCAAGGAGACGGA ACCTTCGGTAGTCAAGTCCGTATCAAGGGCAAGGAGACGGA Direct Loss 0.946717007771006 0 NA NA prediction 0.893434015542013 Functional Loss - FGF18 ENSG00000156427 CDS Human protein_coding chr5:170876194 chr5:170876194 synonymous SNV . 0 21 hm7G_associated_SNPs_3952 0 0 0 0 2 FGF18 chr5:170876151 3'AG 170876151 Downstream 44bp 3864 chr5 170876194 170876194 1 + G T CESC 170876194 + 170876174 170876214 41 ACCTTCGGTAGTCAAGTCCGGATCAAGGGCAAGGAGACGGA ACCTTCGGTAGTCAAGTCCGTATCAAGGGCAAGGAGACGGA Direct Loss 0.946717007771006 0 NA NA prediction 0.893434015542013 Functional Loss - FGF18 ENSG00000156427 CDS Human protein_coding chr5:170876194 chr5:170876194 synonymous SNV . 0 21 hm7G_associated_SNPs_3952 0 0 0 0 2 FGF18 chr5:170876257 5'GT 170876257 Upstream 64bp 3865 chr7 98256591 98256591 1 + G T STAD 98256591 + 98256571 98256611 41 ACGGAGAGAAGCTGGGCACTGGGGAGAACCTGGCCCCCTGG ACGGAGAGAAGCTGGGCACTTGGGAGAACCTGGCCCCCTGG Direct Loss 0.94671379942772 0 NA NA prediction 0.893427598855441 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98256591 chr7:98256591 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3953 0 0 0 0 1 NPTX2 chr7:98256656 5'GT 98256656 Upstream 66bp 3866 chr3 183778026 183778026 1 + G A HNSC 183778026 + 183778006 183778046 41 TCAGGATGGACAAAGACCCAGCTAATGGAGCTGTGGGTGCA TCAGGATGGACAAAGACCCAACTAATGGAGCTGTGGGTGCA Direct Loss 0.946710507671514 0 NA NA prediction 0.893421015343028 Functional Loss - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183778026 chr3:183778026 synonymous SNV . 0 21 hm7G_associated_SNPs_3954 0 0 0 0 1 HTR3C chr3:183777938 3'AG 183777938 Downstream 89bp 3867 chr20 60738605 60738605 1 + G A LUAD 60738605 + 60738585 60738625 41 GGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCAGGG GGCCAGTCGTCCATCGCCATAATGGGGCAGGGCAGCCAGGG Direct Loss 0.946709243209369 0 NA NA prediction 0.893418486418739 Functional Loss - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60738605 chr20:60738605 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3955 0 0 1 0 2 SS18L1 chr20:60738514 3'AG 60738514 Downstream 92bp 3868 chr20 60738605 60738605 1 + G A LUAD 60738605 + 60738585 60738625 41 GGCCAGTCGTCCATCGCCATGATGGGGCAGGGCAGCCAGGG GGCCAGTCGTCCATCGCCATAATGGGGCAGGGCAGCCAGGG Direct Loss 0.946709243209369 0 NA NA prediction 0.893418486418739 Functional Loss - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60738605 chr20:60738605 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3955 0 0 1 0 2 SS18L1 chr20:60738678 5'GT 60738678 Upstream 74bp 3869 chr2 118846061 118846061 1 + G A rs556613630 118846061 + 118846041 118846081 41 GGCGGAGTTGTGGGAGTGGAGGAGGAAGAGGCGGTAGGGGG GGCGGAGTTGTGGGAGTGGAAGAGGAAGAGGCGGTAGGGGG Direct Loss 0.946695532459619 0 NA NA prediction 0.893391064919238 Functional Loss - INSIG2 ENSG00000125629 UTR5 Human protein_coding chr2:118846061 chr2:118846061 . . 0 21 hm7G_associated_SNPs_3956 0 0 1 0 1 INSIG2 chr2:118846117 5'GT 118846117 Upstream 57bp 3870 chr14 24772360 24772360 1 + G T LUSC 24772360 + 24772340 24772380 41 CCAGGGGTAGTCATTGCCCTGGTGGGGGCCTGTCGCAGAGT CCAGGGGTAGTCATTGCCCTTGTGGGGGCCTGTCGCAGAGT Direct Loss 0.946687583186953 0 NA NA prediction 0.893375166373905 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772360 chr14:24772360 synonymous SNV . 0 21 hm7G_associated_SNPs_3957 0 0 1 0 2 NOP9 chr14:24772280 3'AG 24772280 Downstream 81bp 3871 chr14 24772360 24772360 1 + G T LUSC 24772360 + 24772340 24772380 41 CCAGGGGTAGTCATTGCCCTGGTGGGGGCCTGTCGCAGAGT CCAGGGGTAGTCATTGCCCTTGTGGGGGCCTGTCGCAGAGT Direct Loss 0.946687583186953 0 NA NA prediction 0.893375166373905 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772360 chr14:24772360 synonymous SNV . 0 21 hm7G_associated_SNPs_3957 0 0 1 0 2 NOP9 chr14:24772420 5'GT 24772420 Upstream 61bp 3872 chr1 70899534 70899534 1 + G T UCEC 70899534 + 70899514 70899554 41 TGCCCTCTCATCCACAGCATGAGTTGGTGAAGCGTCAGTGT TGCCCTCTCATCCACAGCATTAGTTGGTGAAGCGTCAGTGT Direct Loss 0.946686529484655 0 NA NA prediction 0.893373058969311 Functional Loss - CTH ENSG00000116761 CDS Human protein_coding chr1:70899534 chr1:70899534 stopgain 0.997 0 21 hm7G_associated_SNPs_3958 0 0 1 0 2 CTH chr1:70899511 3'AG 70899511 Downstream 24bp 3873 chr1 70899534 70899534 1 + G T UCEC 70899534 + 70899514 70899554 41 TGCCCTCTCATCCACAGCATGAGTTGGTGAAGCGTCAGTGT TGCCCTCTCATCCACAGCATTAGTTGGTGAAGCGTCAGTGT Direct Loss 0.946686529484655 0 NA NA prediction 0.893373058969311 Functional Loss - CTH ENSG00000116761 CDS Human protein_coding chr1:70899534 chr1:70899534 stopgain 0.997 0 21 hm7G_associated_SNPs_3958 0 0 1 0 2 CTH chr1:70899632 5'GT 70899632 Upstream 99bp 3874 chr15 44853225 44853225 1 + G T STAD 44853225 + 44853205 44853245 41 TTCATCTTTAGCAAAGCAAAGCCAAAAAGAAGAAGAAAGGT TTCATCTTTAGCAAAGCAAATCCAAAAAGAAGAAGAAAGGT Direct Loss 0.946678419958245 0 NA NA prediction 0.89335683991649 Functional Loss - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44853225 chr15:44853225 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3959 0 0 1 0 1 EIF3J chr15:44853216 3'AG 44853216 Downstream 10bp 3875 chr17 10608795 10608795 1 + G T BLCA 10608795 + 10608775 10608815 41 CCAAAATACGAGCAGTGTATGAAGATATTGAGGGAGCACAA CCAAAATACGAGCAGTGTATTAAGATATTGAGGGAGCACAA Direct Loss 0.946666945370684 0 NA NA prediction 0.893333890741367 Functional Loss - ADPRM ENSG00000170222 CDS Human protein_coding chr17:10608795 chr17:10608795 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3960 0 0 1 0 1 ADPRM chr17:10608844 5'GT 10608844 Upstream 50bp 3876 chr11 63276375 63276375 1 + G A SKCM 63276375 + 63276355 63276395 41 CACCCTGCATGGTGGACGCTGGCAAAGGGAGGCCCGGTGGC CACCCTGCATGGTGGACGCTAGCAAAGGGAGGCCCGGTGGC Direct Loss 0.946663235945887 0 NA NA prediction 0.893326471891774 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276375 chr11:63276375 stopgain 0.142 0 21 hm7G_associated_SNPs_3962 0 0 0 0 1 LGALS12 chr11:63276463 5'GT 63276463 Upstream 89bp 3877 chr19 49671542 49671542 1 + G T UCS 49671542 + 49671522 49671562 41 TGGATTGTCACTGGGGGTCTGCACACGGGCATCGGCCGGCA TGGATTGTCACTGGGGGTCTTCACACGGGCATCGGCCGGCA Direct Loss 0.946662848254386 0 NA NA prediction 0.893325696508772 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671542 chr19:49671542 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_3963 0 0 1 0 1 TRPM4 chr19:49671517 3'AG 49671517 Downstream 26bp 3878 chr19 36109867 36109867 1 + G A LIHC 36109867 + 36109847 36109887 41 CACGATCAGAGCCAGGAGCTGCAGGATGCAGCTGGGCATCG CACGATCAGAGCCAGGAGCTACAGGATGCAGCTGGGCATCG Direct Loss 0.946658265100444 0 NA NA prediction 0.893316530200889 Functional Loss - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36109867 chr19:36109867 synonymous SNV . 0 21 hm7G_associated_SNPs_3964 0 0 1 0 2 HAUS5 chr19:36109789 3'AG 36109789 Downstream 79bp 3879 chr19 36109867 36109867 1 + G A LIHC 36109867 + 36109847 36109887 41 CACGATCAGAGCCAGGAGCTGCAGGATGCAGCTGGGCATCG CACGATCAGAGCCAGGAGCTACAGGATGCAGCTGGGCATCG Direct Loss 0.946658265100444 0 NA NA prediction 0.893316530200889 Functional Loss - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36109867 chr19:36109867 synonymous SNV . 0 21 hm7G_associated_SNPs_3964 0 0 1 0 2 HAUS5 chr19:36109951 5'GT 36109951 Upstream 85bp 3880 chr16 67262728 67262728 1 + G T UCEC 67262728 + 67262708 67262748 41 AGGATGTGATCCTACTGACAGCCATCGTGCAGGTGCTCAGC AGGATGTGATCCTACTGACATCCATCGTGCAGGTGCTCAGC Direct Loss 0.946654375136889 0 NA NA prediction 0.893308750273779 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262728 chr16:67262728 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3965 0 0 1 0 2 TMEM208 chr16:67262700 3'AG 67262700 Downstream 29bp 3881 chr16 67262728 67262728 1 + G T UCEC 67262728 + 67262708 67262748 41 AGGATGTGATCCTACTGACAGCCATCGTGCAGGTGCTCAGC AGGATGTGATCCTACTGACATCCATCGTGCAGGTGCTCAGC Direct Loss 0.946654375136889 0 NA NA prediction 0.893308750273779 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262728 chr16:67262728 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_3965 0 0 1 0 2 TMEM208 chr16:67262784 5'GT 67262784 Upstream 57bp 3882 chr10 64906008 64906008 1 + G A UCEC 64906008 + 64905988 64906028 41 GAGCAGACCGTTTATTAGCTGCAGGCAAATACGAAGAGGCT GAGCAGACCGTTTATTAGCTACAGGCAAATACGAAGAGGCT Direct Loss 0.946653461772343 0 NA NA prediction 0.893306923544685 Functional Loss - NRBF2 ENSG00000148572 CDS Human protein_coding chr10:64906008 chr10:64906008 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_3966 0 0 0 0 2 NRBF2 chr10:64905969 3'AG 64905969 Downstream 40bp 3883 chr10 64906008 64906008 1 + G A UCEC 64906008 + 64905988 64906028 41 GAGCAGACCGTTTATTAGCTGCAGGCAAATACGAAGAGGCT GAGCAGACCGTTTATTAGCTACAGGCAAATACGAAGAGGCT Direct Loss 0.946653461772343 0 NA NA prediction 0.893306923544685 Functional Loss - NRBF2 ENSG00000148572 CDS Human protein_coding chr10:64906008 chr10:64906008 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_3966 0 0 0 0 2 NRBF2 chr10:64906053 5'GT 64906053 Upstream 46bp 3884 chr16 70349951 70349951 1 + G A UCEC 70349951 + 70349931 70349971 41 ACAAACCAAGTGGAAGTCCTGCAGCGGGATCCAAACTCCCC ACAAACCAAGTGGAAGTCCTACAGCGGGATCCAAACTCCCC Direct Loss 0.946650134325898 0 NA NA prediction 0.893300268651797 Functional Loss - DDX19B ENSG00000157349;ENSG00000260537 CDS Human other chr16:70349951 chr16:70349951 synonymous SNV . 0 21 hm7G_associated_SNPs_3967 0 0 1 0 2 DDX19B chr16:70349872 3'AG 70349872 Downstream 80bp 3885 chr16 70349951 70349951 1 + G A UCEC 70349951 + 70349931 70349971 41 ACAAACCAAGTGGAAGTCCTGCAGCGGGATCCAAACTCCCC ACAAACCAAGTGGAAGTCCTACAGCGGGATCCAAACTCCCC Direct Loss 0.946650134325898 0 NA NA prediction 0.893300268651797 Functional Loss - DDX19B ENSG00000157349;ENSG00000260537 CDS Human other chr16:70349951 chr16:70349951 synonymous SNV . 0 21 hm7G_associated_SNPs_3967 0 0 1 0 2 DDX19B chr16:70350007 5'GT 70350007 Upstream 57bp 3886 chr4 70160338 70160338 1 + G C rs72552703 70160338 + 70160318 70160358 41 GTCTTCTGGATTGAATTTGTGATGTGCCACAAAGGAGCCAA GTCTTCTGGATTGAATTTGTCATGTGCCACAAAGGAGCCAA Direct Loss 0.946646419638739 0 NA NA prediction 0.893292839277479 Functional Loss - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70160338 chr4:70160338 synonymous SNV . 0 21 hm7G_associated_SNPs_3968 0 0 0 0 1 UGT2B28 chr4:70160248 3'AG 70160248 Downstream 91bp 3887 chr7 87370820 87370820 1 + G T SARC 87370820 + 87370800 87370840 41 TTTCTATTGTCTTAGTTTCTGCCTAAAGGGAGAGGGGCTGG TTTCTATTGTCTTAGTTTCTTCCTAAAGGGAGAGGGGCTGG Direct Loss 0.946625697838057 0 NA NA prediction 0.893251395676115 Functional Loss - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87370820 chr7:87370820 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3970 0 0 0 0 2 RUNDC3B chr7:87370815 3'AG 87370815 Downstream 6bp 3888 chr7 87370820 87370820 1 + G T SARC 87370820 + 87370800 87370840 41 TTTCTATTGTCTTAGTTTCTGCCTAAAGGGAGAGGGGCTGG TTTCTATTGTCTTAGTTTCTTCCTAAAGGGAGAGGGGCTGG Direct Loss 0.946625697838057 0 NA NA prediction 0.893251395676115 Functional Loss - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87370820 chr7:87370820 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3970 0 0 0 0 2 RUNDC3B chr7:87370895 5'GT 87370895 Upstream 76bp 3889 chr6 167447400 167447400 1 + G A CHOL 167447400 + 167447380 167447420 41 AGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGAC AGAAAAGTGAGATAAGTATTAGTGAAGAGATAGAAGAAGAC Direct Loss 0.946624529248051 0 NA NA prediction 0.893249058496102 Functional Loss - FGFR1OP ENSG00000213066 CDS Human protein_coding chr6:167447400 chr6:167447400 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_3971 0 0 1 0 2 FGFR1OP chr6:167447363 3'AG 167447363 Downstream 38bp 3890 chr6 167447400 167447400 1 + G A CHOL 167447400 + 167447380 167447420 41 AGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGAC AGAAAAGTGAGATAAGTATTAGTGAAGAGATAGAAGAAGAC Direct Loss 0.946624529248051 0 NA NA prediction 0.893249058496102 Functional Loss - FGFR1OP ENSG00000213066 CDS Human protein_coding chr6:167447400 chr6:167447400 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_3971 0 0 1 0 2 FGFR1OP chr6:167447459 5'GT 167447459 Upstream 60bp 3891 chrX 11316688 11316688 1 + G A LAML 11316688 + 11316668 11316708 41 TACCCTTCCTATGGTTACGAGCCCATGGGTGGATGGCTGCA TACCCTTCCTATGGTTACGAACCCATGGGTGGATGGCTGCA Direct Loss 0.946607513466742 0 NA NA prediction 0.893215026933485 Functional Loss - AMELX ENSG00000125363 CDS Human protein_coding chrX:11316688 chrX:11316688 synonymous SNV . 0 21 hm7G_associated_SNPs_3973 0 0 0 0 1 AMELX chrX:11316668 3'AG 11316668 Downstream 21bp 3892 chr1 76259838 76259838 1 + G T LUSC 76259838 + 76259818 76259858 41 TTGGAAGACTTCATTGGATTGATAGAGAGAAACTGCGTAAT TTGGAAGACTTCATTGGATTTATAGAGAGAAACTGCGTAAT Direct Loss 0.94660665756805 0 NA NA prediction 0.893213315136099 Functional Loss - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76259838 chr1:76259838 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_3974 0 0 1 0 1 RABGGTB chr1:76259769 3'AG 76259769 Downstream 70bp 3893 chr22 45726490 45726490 1 + G C HNSC 45726490 + 45726470 45726510 41 TTGATGTTTGGTAGGTCCTTGAATGGGCAAGAGGGCACATG TTGATGTTTGGTAGGTCCTTCAATGGGCAAGAGGGCACATG Direct Loss 0.946600719869759 0 NA NA prediction 0.893201439739519 Functional Loss - FAM118A ENSG00000100376 CDS Human protein_coding chr22:45726490 chr22:45726490 nonsynonymous SNV 0.934 0 21 hm7G_associated_SNPs_3975 0 0 1 0 1 FAM118A chr22:45726484 3'AG 45726484 Downstream 7bp 3894 chr18 2616457 2616457 1 + G C rs9051 2616457 + 2616437 2616477 41 AACATCTTGAGGAGCAGATTGCTAAAGTTGATAGAGAATAT AACATCTTGAGGAGCAGATTCCTAAAGTTGATAGAGAATAT Direct Loss 0.94655793124784 0 NA NA prediction 0.893115862495681 Functional Loss - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2616457 chr18:2616457 nonsynonymous SNV 0.850 0 21 hm7G_associated_SNPs_3982 0 0 1 0 1 NDC80 chr18:2616436 3'AG 2616436 Downstream 22bp 3895 chr16 75688199 75688199 1 + G T SARC 75688199 + 75688179 75688219 41 AATAAGAGAACTCCAGATTTGCCTGAAGAAGAGTATGTGAA AATAAGAGAACTCCAGATTTTCCTGAAGAAGAGTATGTGAA Direct Loss 0.946538916307528 0 NA NA prediction 0.893077832615055 Functional Loss - TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75688199 chr16:75688199 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_3983 0 0 1 0 2 TERF2IP chr16:75688171 3'AG 75688171 Downstream 29bp 3896 chr16 75688199 75688199 1 + G T SARC 75688199 + 75688179 75688219 41 AATAAGAGAACTCCAGATTTGCCTGAAGAAGAGTATGTGAA AATAAGAGAACTCCAGATTTTCCTGAAGAAGAGTATGTGAA Direct Loss 0.946538916307528 0 NA NA prediction 0.893077832615055 Functional Loss - TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75688199 chr16:75688199 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_3983 0 0 1 0 2 TERF2IP chr16:75688295 5'GT 75688295 Upstream 97bp 3897 chr19 40478368 40478368 1 + G A UCEC 40478368 + 40478348 40478388 41 AAGGAATTTCTCCATGCCCAGGAGGAGGTGAAGCGAATCCA AAGGAATTTCTCCATGCCCAAGAGGAGGTGAAGCGAATCCA Direct Loss 0.946533042361679 0 NA NA prediction 0.893066084723357 Functional Loss - PSMC4;PSMC4 ENSG00000013275;ENSG00000013275 exonic;splicing Human protein_coding chr19:40478368 chr19:40478368 synonymous SNV 1.000 0 21 hm7G_associated_SNPs_3984 0 0 1 0 2 PSMC4 chr19:40478276 3'AG 40478276 Downstream 93bp 3898 chr19 40478368 40478368 1 + G A UCEC 40478368 + 40478348 40478388 41 AAGGAATTTCTCCATGCCCAGGAGGAGGTGAAGCGAATCCA AAGGAATTTCTCCATGCCCAAGAGGAGGTGAAGCGAATCCA Direct Loss 0.946533042361679 0 NA NA prediction 0.893066084723357 Functional Loss - PSMC4;PSMC4 ENSG00000013275;ENSG00000013275 exonic;splicing Human protein_coding chr19:40478368 chr19:40478368 synonymous SNV 1.000 0 21 hm7G_associated_SNPs_3984 0 0 1 0 2 PSMC4 chr19:40478462 5'GT 40478462 Upstream 95bp 3899 chr7 130021969 130021969 1 + G T LUAD 130021969 + 130021949 130021989 41 ATCTATGACTTCCTGGACCTGCTGGTGGCGGAGAACCCGCA ATCTATGACTTCCTGGACCTTCTGGTGGCGGAGAACCCGCA Direct Loss 0.946530545141928 0 NA NA prediction 0.893061090283857 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021969 chr7:130021969 synonymous SNV . 0 21 hm7G_associated_SNPs_3985 0 0 0 0 2 CPA1 chr7:130021949 3'AG 130021949 Downstream 21bp 3900 chr7 130021969 130021969 1 + G T LUAD 130021969 + 130021949 130021989 41 ATCTATGACTTCCTGGACCTGCTGGTGGCGGAGAACCCGCA ATCTATGACTTCCTGGACCTTCTGGTGGCGGAGAACCCGCA Direct Loss 0.946530545141928 0 NA NA prediction 0.893061090283857 Functional Loss - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021969 chr7:130021969 synonymous SNV . 0 21 hm7G_associated_SNPs_3985 0 0 0 0 2 CPA1 chr7:130022050 5'GT 130022050 Upstream 82bp 3901 chr7 134632475 134632475 1 + G A STAD 134632475 + 134632455 134632495 41 AAGGTCCTGGAGGAGGAAGAGCAGAGGAGGAAGCAGGAGGA AAGGTCCTGGAGGAGGAAGAACAGAGGAGGAAGCAGGAGGA Direct Loss 0.946513386498116 0 NA NA prediction 0.893026772996232 Functional Loss - CALD1 ENSG00000122786 CDS Human protein_coding chr7:134632475 chr7:134632475 synonymous SNV . 0 21 hm7G_associated_SNPs_3987 0 0 1 0 1 CALD1 chr7:134632520 5'GT 134632520 Upstream 46bp 3902 chr20 44421354 44421354 1 + G T SARC 44421354 + 44421334 44421374 41 ATAAAGCACCGGCAGGTGCAGCGGAGGGGCCGCCGCTCACA ATAAAGCACCGGCAGGTGCATCGGAGGGGCCGCCGCTCACA Direct Loss 0.946496261972047 0 NA NA prediction 0.892992523944094 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44421354 chr20:44421354 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3989 0 0 1 0 2 DNTTIP1 chr20:44421316 3'AG 44421316 Downstream 39bp 3903 chr20 44421354 44421354 1 + G T SARC 44421354 + 44421334 44421374 41 ATAAAGCACCGGCAGGTGCAGCGGAGGGGCCGCCGCTCACA ATAAAGCACCGGCAGGTGCATCGGAGGGGCCGCCGCTCACA Direct Loss 0.946496261972047 0 NA NA prediction 0.892992523944094 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44421354 chr20:44421354 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_3989 0 0 1 0 2 DNTTIP1 chr20:44421386 5'GT 44421386 Upstream 33bp 3904 chr15 79178490 79178490 1 + G A BLCA 79178490 + 79178470 79178510 41 TCCTCTTTTTCAGTTGGGATGAATGGGTTCCGGAGAGCAGA TCCTCTTTTTCAGTTGGGATAAATGGGTTCCGGAGAGCAGA Direct Loss 0.946486891372437 0 NA NA prediction 0.892973782744875 Functional Loss - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79178490 chr15:79178490 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3991 0 0 1 0 2 MORF4L1 chr15:79178483 3'AG 79178483 Downstream 8bp 3905 chr15 79178490 79178490 1 + G A BLCA 79178490 + 79178470 79178510 41 TCCTCTTTTTCAGTTGGGATGAATGGGTTCCGGAGAGCAGA TCCTCTTTTTCAGTTGGGATAAATGGGTTCCGGAGAGCAGA Direct Loss 0.946486891372437 0 NA NA prediction 0.892973782744875 Functional Loss - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79178490 chr15:79178490 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3991 0 0 1 0 2 MORF4L1 chr15:79178569 5'GT 79178569 Upstream 80bp 3906 chr6 35280539 35280539 1 + G T SARC 35280539 + 35280519 35280559 41 TATCCCGCTGGATGCACACTGCTGCGTGGAGGTGAGGGGCA TATCCCGCTGGATGCACACTTCTGCGTGGAGGTGAGGGGCA Direct Loss 0.946482915264851 0 NA NA prediction 0.892965830529702 Functional Loss - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35280539 chr6:35280539 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_3992 0 0 1 0 1 DEF6 chr6:35280549 5'GT 35280549 Upstream 11bp 3907 chr1 151060740 151060740 1 + G T LUSC 151060740 + 151060720 151060760 41 GATGATGAAGTGAGAACGTTGATGGCAAATGGCGCCCCATT GATGATGAAGTGAGAACGTTTATGGCAAATGGCGCCCCATT Direct Loss 0.946478709413511 0 NA NA prediction 0.892957418827023 Functional Loss - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151060740 chr1:151060740 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3993 0 0 1 0 2 GABPB2 chr1:151060666 3'AG 151060666 Downstream 75bp 3908 chr1 151060740 151060740 1 + G T LUSC 151060740 + 151060720 151060760 41 GATGATGAAGTGAGAACGTTGATGGCAAATGGCGCCCCATT GATGATGAAGTGAGAACGTTTATGGCAAATGGCGCCCCATT Direct Loss 0.946478709413511 0 NA NA prediction 0.892957418827023 Functional Loss - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151060740 chr1:151060740 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_3993 0 0 1 0 2 GABPB2 chr1:151060773 5'GT 151060773 Upstream 34bp 3909 chr11 94040391 94040391 1 + G A LIHC 94040391 + 94040371 94040411 41 CGCTGTGCCAGGAGGACTGTGAGGAGTGGTGGGAAGACTGT CGCTGTGCCAGGAGGACTGTAAGGAGTGGTGGGAAGACTGT Direct Loss 0.946470770652596 0 NA NA prediction 0.892941541305192 Functional Loss - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94040391 chr11:94040391 nonsynonymous SNV 0.353 0 21 hm7G_associated_SNPs_3995 0 0 0 0 1 IZUMO1R chr11:94040331 3'AG 94040331 Downstream 61bp 3910 chr14 20813569 20813569 1 + G C CESC 20813569 + 20813549 20813589 41 TCAGAATCTGTGAAGGCCTTGCTGTTAAAGGGCAAAGCTCC TCAGAATCTGTGAAGGCCTTCCTGTTAAAGGGCAAAGCTCC Direct Loss 0.94646539730615 0 NA NA prediction 0.892930794612299 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20813569 chr14:20813569 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_3996 0 0 1 0 2 PARP2 chr14:20813553 3'AG 20813553 Downstream 17bp 3911 chr14 20813569 20813569 1 + G C CESC 20813569 + 20813549 20813589 41 TCAGAATCTGTGAAGGCCTTGCTGTTAAAGGGCAAAGCTCC TCAGAATCTGTGAAGGCCTTCCTGTTAAAGGGCAAAGCTCC Direct Loss 0.94646539730615 0 NA NA prediction 0.892930794612299 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20813569 chr14:20813569 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_3996 0 0 1 0 2 PARP2 chr14:20813623 5'GT 20813623 Upstream 55bp 3912 chr2 37321272 37321272 1 + G T UCEC 37321272 + 37321252 37321292 41 TACTGGTTGAGGCTTGAAGAGGAGACTGAAGAAGATGAAGA TACTGGTTGAGGCTTGAAGATGAGACTGAAGAAGATGAAGA Direct Loss 0.94646191805845 0 NA NA prediction 0.892923836116901 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37321272 chr2:37321272 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_3997 0 0 1 0 1 GPATCH11 chr2:37321225 3'AG 37321225 Downstream 48bp 3913 chr19 17671238 17671238 1 + G T HNSC 17671238 + 17671218 17671258 41 AAGTTGCGCCAGGCAGCCCTGAAATCAGCTCGAGACATGTG AAGTTGCGCCAGGCAGCCCTTAAATCAGCTCGAGACATGTG Direct Loss 0.946449102310803 0 NA NA prediction 0.892898204621605 Functional Loss - COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17671238 chr19:17671238 synonymous SNV . 0 21 hm7G_associated_SNPs_3999 0 0 1 0 2 COLGALT1 chr19:17671157 3'AG 17671157 Downstream 82bp 3914 chr19 17671238 17671238 1 + G T HNSC 17671238 + 17671218 17671258 41 AAGTTGCGCCAGGCAGCCCTGAAATCAGCTCGAGACATGTG AAGTTGCGCCAGGCAGCCCTTAAATCAGCTCGAGACATGTG Direct Loss 0.946449102310803 0 NA NA prediction 0.892898204621605 Functional Loss - COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17671238 chr19:17671238 synonymous SNV . 0 21 hm7G_associated_SNPs_3999 0 0 1 0 2 COLGALT1 chr19:17671274 5'GT 17671274 Upstream 37bp 3915 chr1 63284942 63284942 1 + G T UCEC 63284942 + 63284922 63284962 41 TACATCAACTAATAGAATATGGAAAGAAGTCTGGGAAAAAA TACATCAACTAATAGAATATTGAAAGAAGTCTGGGAAAAAA Direct Loss 0.946448203207273 0 NA NA prediction 0.892896406414547 Functional Loss - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63284942 chr1:63284942 stopgain 1.000 1 21 hm7G_associated_SNPs_4000 0 0 1 0 1 ATG4C chr1:63285006 5'GT 63285006 Upstream 65bp 3916 chr16 68714912 68714912 1 + G T rs148535251 68714912 + 68714892 68714932 41 ACCATCCAGGCCACAGACATGGATGGGGACGGCTCCACCAC ACCATCCAGGCCACAGACATTGATGGGGACGGCTCCACCAC Direct Loss 0.946445406176822 0 NA NA prediction 0.892890812353644 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68714912 chr16:68714912 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4001 0 0 0 0 2 CDH3 chr16:68714871 3'AG 68714871 Downstream 42bp 3917 chr16 68714912 68714912 1 + G T rs148535251 68714912 + 68714892 68714932 41 ACCATCCAGGCCACAGACATGGATGGGGACGGCTCCACCAC ACCATCCAGGCCACAGACATTGATGGGGACGGCTCCACCAC Direct Loss 0.946445406176822 0 NA NA prediction 0.892890812353644 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68714912 chr16:68714912 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4001 0 0 0 0 2 CDH3 chr16:68714999 5'GT 68714999 Upstream 88bp 3918 chr7 129330380 129330380 1 + G T UCEC 129330380 + 129330360 129330400 41 CCAGTCTCTGTGGACAAAATGACCCAGGTGAGGGGTGGGAG CCAGTCTCTGTGGACAAAATTACCCAGGTGAGGGGTGGGAG Direct Loss 0.94643055165175 0 NA NA prediction 0.8928611033035 Functional Loss - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129330380 chr7:129330380 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4002 0 0 0 0 1 NRF1 chr7:129330386 5'GT 129330386 Upstream 7bp 3919 chr13 26927991 26927991 1 + G T SARC 26927991 + 26927971 26928011 41 ATGGTATTCACTACCTGCATGCTAACTGGGTGTTGCACAGA ATGGTATTCACTACCTGCATTCTAACTGGGTGTTGCACAGA Direct Loss 0.946407718979266 0 NA NA prediction 0.892815437958532 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927991 chr13:26927991 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4004 0 0 1 0 1 CDK8 chr13:26928017 5'GT 26928017 Upstream 27bp 3920 chr12 102122982 102122982 1 - C T BLCA 102122982 - 102122962 102123002 41 TGTGTTTTTAGAGTATGGAAGAGTTGGAGAAGAATCATGAT TGTGTTTTTAGAGTATGGAAAAGTTGGAGAAGAATCATGAT Direct Loss 0.946407296154219 0 NA NA prediction 0.892814592308438 Functional Loss - SYCP3 ENSG00000139351 CDS Human protein_coding chr12:102122982 chr12:102122982 nonsynonymous SNV 0.721 1 21 hm7G_associated_SNPs_4005 0 0 0 0 1 SYCP3 chr12:102122887 5'GT 102122887 Upstream 96bp 3921 chr6 72006064 72006064 1 + G A SKCM 72006064 + 72006044 72006084 41 GTAAATGGAAAGGAGATTATGAAAAACTGGAGCACAACCAC GTAAATGGAAAGGAGATTATAAAAAACTGGAGCACAACCAC Direct Loss 0.946403617667518 0 NA NA prediction 0.892807235335036 Functional Loss - OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72006064 chr6:72006064 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4006 0 0 0 0 2 OGFRL1 chr6:72006020 3'AG 72006020 Downstream 45bp 3922 chr6 72006064 72006064 1 + G A SKCM 72006064 + 72006044 72006084 41 GTAAATGGAAAGGAGATTATGAAAAACTGGAGCACAACCAC GTAAATGGAAAGGAGATTATAAAAAACTGGAGCACAACCAC Direct Loss 0.946403617667518 0 NA NA prediction 0.892807235335036 Functional Loss - OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72006064 chr6:72006064 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4006 0 0 0 0 2 OGFRL1 chr6:72006098 5'GT 72006098 Upstream 35bp 3923 chrX 54470611 54470611 1 + G C LGG 54470611 + 54470591 54470631 41 GATGTGGACAGTGTGGAAGAGATGGAGGTGAAGTGGGTGCC GATGTGGACAGTGTGGAAGACATGGAGGTGAAGTGGGTGCC Direct Loss 0.94640289360473 0 NA NA prediction 0.892805787209461 Functional Loss - TSR2 ENSG00000158526 CDS Human protein_coding chrX:54470611 chrX:54470611 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_4007 0 0 1 0 1 TSR2 chrX:54470617 5'GT 54470617 Upstream 7bp 3924 chr17 30815316 30815316 1 + G A STAD 30815316 + 30815296 30815336 41 CACGAGCTCCAGGCCGTCCTGCTGACATGCCTGTACCTCTC CACGAGCTCCAGGCCGTCCTACTGACATGCCTGTACCTCTC Direct Loss 0.946402478136083 0 NA NA prediction 0.892804956272166 Functional Loss - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30815316 chr17:30815316 synonymous SNV . 0 21 hm7G_associated_SNPs_4008 0 0 0 0 1 CDK5R1 chr17:30815265 3'AG 30815265 Downstream 52bp 3925 chr1 153604222 153604222 1 + G A SKCM 153604222 + 153604202 153604242 41 AGGTGATGAAGGAGCTAGACGAGAATGGAGACGGGGAGGTG AGGTGATGAAGGAGCTAGACAAGAATGGAGACGGGGAGGTG Direct Loss 0.946400955067817 0 NA NA prediction 0.892801910135634 Functional Loss - S100A1 ENSG00000160678 CDS Human protein_coding chr1:153604222 chr1:153604222 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4009 0 0 1 1 1 S100A1 chr1:153604174 3'AG 153604174 Downstream 49bp 3926 chr17 38289346 38289346 1 + G A BLCA 38289346 + 38289326 38289366 41 ATGCAAAACTGGAGCTGGATGAGAAGAGAAGGAAAAGGTGA ATGCAAAACTGGAGCTGGATAAGAAGAGAAGGAAAAGGTGA Direct Loss 0.946380383021779 0 NA NA prediction 0.892760766043557 Functional Loss - MSL1 ENSG00000188895 CDS Human protein_coding chr17:38289346 chr17:38289346 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4010 0 0 1 0 2 MSL1 chr17:38289295 3'AG 38289295 Downstream 52bp 3927 chr17 38289346 38289346 1 + G A BLCA 38289346 + 38289326 38289366 41 ATGCAAAACTGGAGCTGGATGAGAAGAGAAGGAAAAGGTGA ATGCAAAACTGGAGCTGGATAAGAAGAGAAGGAAAAGGTGA Direct Loss 0.946380383021779 0 NA NA prediction 0.892760766043557 Functional Loss - MSL1 ENSG00000188895 CDS Human protein_coding chr17:38289346 chr17:38289346 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4010 0 0 1 0 2 MSL1 chr17:38289362 5'GT 38289362 Upstream 17bp 3928 chr19 19359655 19359655 1 + G T LUSC 19359655 + 19359635 19359675 41 CCATTCGATGCCGGAGCAATGGCAAGTGGGACAGGCCCCAA CCATTCGATGCCGGAGCAATTGCAAGTGGGACAGGCCCCAA Direct Loss 0.946377002854298 0 NA NA prediction 0.892754005708595 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19359655 chr19:19359655 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4011 0 0 0 0 1 NCAN chr19:19359691 5'GT 19359691 Upstream 37bp 3929 chr4 155491660 155491660 1 + G T UCEC 155491660 + 155491640 155491680 41 TGCAGCCAATCCAAACGGCAGATACTACTGGGGTGGACAGT TGCAGCCAATCCAAACGGCATATACTACTGGGGTGGACAGT Direct Loss 0.946374744769914 0 NA NA prediction 0.892749489539827 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155491660 chr4:155491660 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4012 0 0 1 0 1 FGB chr4:155491571 3'AG 155491571 Downstream 90bp 3930 chr1 183209264 183209264 1 + G A SKCM 183209264 + 183209244 183209284 41 GCCTCTCTGAAGAGTGAGATGAGGGAAGTGGAAGGAGAGCT GCCTCTCTGAAGAGTGAGATAAGGGAAGTGGAAGGAGAGCT Direct Loss 0.946374601568076 0 NA NA prediction 0.892749203136152 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183209264 chr1:183209264 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4013 0 0 0 0 2 LAMC2 chr1:183209175 3'AG 183209175 Downstream 90bp 3931 chr1 183209264 183209264 1 + G A SKCM 183209264 + 183209244 183209284 41 GCCTCTCTGAAGAGTGAGATGAGGGAAGTGGAAGGAGAGCT GCCTCTCTGAAGAGTGAGATAAGGGAAGTGGAAGGAGAGCT Direct Loss 0.946374601568076 0 NA NA prediction 0.892749203136152 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183209264 chr1:183209264 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4013 0 0 0 0 2 LAMC2 chr1:183209333 5'GT 183209333 Upstream 70bp 3932 chr12 110345367 110345367 1 + G A HNSC 110345367 + 110345347 110345387 41 AGCAAGAGAACAAACGGTATGAAAATGAATATGAAAGGGCC AGCAAGAGAACAAACGGTATAAAAATGAATATGAAAGGGCC Direct Loss 0.946367365679708 0 NA NA prediction 0.892734731359416 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110345367 chr12:110345367 nonsynonymous SNV 0.038 4 21 hm7G_associated_SNPs_4014 0 0 1 0 1 TCHP chr12:110345331 3'AG 110345331 Downstream 37bp 3933 chr16 29858617 29858617 1 + G A BLCA 29858617 + 29858597 29858637 41 GCAAGGCTCAGCAGCTGGCTGAGGTGGAGGTGAAGAAGTTC GCAAGGCTCAGCAGCTGGCTAAGGTGGAGGTGAAGAAGTTC Direct Loss 0.946356635562905 0 NA NA prediction 0.89271327112581 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29858617 chr16:29858617 nonsynonymous SNV 0.968 0 21 hm7G_associated_SNPs_4018 0 0 0 0 2 MVP chr16:29858518 3'AG 29858518 Downstream 100bp 3934 chr16 29858617 29858617 1 + G A BLCA 29858617 + 29858597 29858637 41 GCAAGGCTCAGCAGCTGGCTGAGGTGGAGGTGAAGAAGTTC GCAAGGCTCAGCAGCTGGCTAAGGTGGAGGTGAAGAAGTTC Direct Loss 0.946356635562905 0 NA NA prediction 0.89271327112581 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29858617 chr16:29858617 nonsynonymous SNV 0.968 0 21 hm7G_associated_SNPs_4018 0 0 0 0 2 MVP chr16:29858706 5'GT 29858706 Upstream 90bp 3935 chr1 8385384 8385384 1 + G A GBM 8385384 + 8385364 8385404 41 TACTGCAGCCTCTGTTGGGTGCTTGGAGTGACCGGTGTACC TACTGCAGCCTCTGTTGGGTACTTGGAGTGACCGGTGTACC Direct Loss 0.946346896785593 0 NA NA prediction 0.892693793571186 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8385384 chr1:8385384 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4020 0 0 0 0 2 SLC45A1 chr1:8385358 3'AG 8385358 Downstream 27bp 3936 chr1 8385384 8385384 1 + G A GBM 8385384 + 8385364 8385404 41 TACTGCAGCCTCTGTTGGGTGCTTGGAGTGACCGGTGTACC TACTGCAGCCTCTGTTGGGTACTTGGAGTGACCGGTGTACC Direct Loss 0.946346896785593 0 NA NA prediction 0.892693793571186 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8385384 chr1:8385384 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4020 0 0 0 0 2 SLC45A1 chr1:8385450 5'GT 8385450 Upstream 67bp 3937 chr3 137748708 137748708 1 + G A COAD 137748708 + 137748688 137748728 41 ACACTAATTGGGGGTGTGATGATGTGCATCGCCTGCCGGGG ACACTAATTGGGGGTGTGATAATGTGCATCGCCTGCCGGGG Direct Loss 0.946346715072261 0 NA NA prediction 0.892693430144522 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137748708 chr3:137748708 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4021 0 0 0 0 2 CLDN18 chr3:137748639 3'AG 137748639 Downstream 70bp 3938 chr3 137748708 137748708 1 + G A COAD 137748708 + 137748688 137748728 41 ACACTAATTGGGGGTGTGATGATGTGCATCGCCTGCCGGGG ACACTAATTGGGGGTGTGATAATGTGCATCGCCTGCCGGGG Direct Loss 0.946346715072261 0 NA NA prediction 0.892693430144522 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137748708 chr3:137748708 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4021 0 0 0 0 2 CLDN18 chr3:137748749 5'GT 137748749 Upstream 42bp 3939 chr5 150400254 150400254 1 + G C rs8177413 150400254 + 150400234 150400274 41 GCGTCCTGCCTGCTTTCCCTGCTCCTGGCCGGCTTCGTCTC GCGTCCTGCCTGCTTTCCCTCCTCCTGGCCGGCTTCGTCTC Direct Loss 0.946345526450197 0 NA NA prediction 0.892691052900393 Functional Loss - GPX3 ENSG00000211445 CDS Human protein_coding chr5:150400254 chr5:150400254 unknown . 0 21 hm7G_associated_SNPs_4022 0 0 1 0 1 GPX3 chr5:150400302 5'GT 150400302 Upstream 49bp 3940 chr7 99795746 99795746 1 + G A LUAD 99795746 + 99795726 99795766 41 TGGTCATGGACAGAGAGTATGATGTGGCAGTGGAGGCTGTC TGGTCATGGACAGAGAGTATAATGTGGCAGTGGAGGCTGTC Direct Loss 0.946322474093501 0 NA NA prediction 0.892644948187001 Functional Loss - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99795746 chr7:99795746 nonsynonymous SNV 0.964 1 21 hm7G_associated_SNPs_4024 0 0 0 0 2 STAG3 chr7:99795710 3'AG 99795710 Downstream 37bp 3941 chr7 99795746 99795746 1 + G A LUAD 99795746 + 99795726 99795766 41 TGGTCATGGACAGAGAGTATGATGTGGCAGTGGAGGCTGTC TGGTCATGGACAGAGAGTATAATGTGGCAGTGGAGGCTGTC Direct Loss 0.946322474093501 0 NA NA prediction 0.892644948187001 Functional Loss - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99795746 chr7:99795746 nonsynonymous SNV 0.964 1 21 hm7G_associated_SNPs_4024 0 0 0 0 2 STAG3 chr7:99795789 5'GT 99795789 Upstream 44bp 3942 chr15 52497171 52497171 1 + G A UCEC 52497171 + 52497151 52497191 41 CTTCACCGCCTGCCTCACAAGCTCGGGGTCCAGGCCGTTCT CTTCACCGCCTGCCTCACAAACTCGGGGTCCAGGCCGTTCT Direct Loss 0.946303819756675 0 NA NA prediction 0.892607639513349 Functional Loss - MYO5C ENSG00000128833 CDS Human protein_coding chr15:52497171 chr15:52497171 nonsynonymous SNV 0.582 2 21 hm7G_associated_SNPs_4025 0 0 0 0 1 MYO5C chr15:52497086 3'AG 52497086 Downstream 86bp 3943 chr22 45723878 45723878 1 + G C LUAD 45723878 + 45723858 45723898 41 ACCACCAACTATGACAACCTGCTGGAGGCCTTTGGCCGGCG ACCACCAACTATGACAACCTCCTGGAGGCCTTTGGCCGGCG Direct Loss 0.946293810653467 0 NA NA prediction 0.892587621306933 Functional Loss - FAM118A ENSG00000100376 CDS Human protein_coding chr22:45723878 chr22:45723878 synonymous SNV . 0 21 hm7G_associated_SNPs_4027 0 0 1 0 1 FAM118A chr22:45723944 5'GT 45723944 Upstream 67bp 3944 chr1 12026364 12026364 1 + G A UCEC 12026364 + 12026344 12026384 41 AAAGCCCTGGCAGGGAAGCTGGTGGAGACGGTAAGGGCCAT AAAGCCCTGGCAGGGAAGCTAGTGGAGACGGTAAGGGCCAT Direct Loss 0.946286714386487 0 NA NA prediction 0.892573428772974 Functional Loss - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12026364 chr1:12026364 synonymous SNV . 0 21 hm7G_associated_SNPs_4028 0 0 1 0 2 PLOD1 chr1:12026308 3'AG 12026308 Downstream 57bp 3945 chr1 12026364 12026364 1 + G A UCEC 12026364 + 12026344 12026384 41 AAAGCCCTGGCAGGGAAGCTGGTGGAGACGGTAAGGGCCAT AAAGCCCTGGCAGGGAAGCTAGTGGAGACGGTAAGGGCCAT Direct Loss 0.946286714386487 0 NA NA prediction 0.892573428772974 Functional Loss - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12026364 chr1:12026364 synonymous SNV . 0 21 hm7G_associated_SNPs_4028 0 0 1 0 2 PLOD1 chr1:12026373 5'GT 12026373 Upstream 10bp 3946 chr19 45488522 45488522 1 + G T LUAD 45488522 + 45488502 45488542 41 TTTCAGAAAACCAAGAACCTGCTGACAGGAGAGACAGAAGC TTTCAGAAAACCAAGAACCTTCTGACAGGAGAGACAGAAGC Direct Loss 0.946283096403014 0 NA NA prediction 0.892566192806027 Functional Loss - CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45488522 chr19:45488522 synonymous SNV . 0 21 hm7G_associated_SNPs_4029 0 0 1 0 2 CLPTM1 chr19:45488476 3'AG 45488476 Downstream 47bp 3947 chr19 45488522 45488522 1 + G T LUAD 45488522 + 45488502 45488542 41 TTTCAGAAAACCAAGAACCTGCTGACAGGAGAGACAGAAGC TTTCAGAAAACCAAGAACCTTCTGACAGGAGAGACAGAAGC Direct Loss 0.946283096403014 0 NA NA prediction 0.892566192806027 Functional Loss - CLPTM1 ENSG00000104853 CDS Human protein_coding chr19:45488522 chr19:45488522 synonymous SNV . 0 21 hm7G_associated_SNPs_4029 0 0 1 0 2 CLPTM1 chr19:45488561 5'GT 45488561 Upstream 40bp 3948 chr10 1053023 1053023 1 + G T LUSC 1053023 + 1053003 1053043 41 GGAAATAAAGTGAATGAGGTGCTGAATAGACTGCACCTGGC GGAAATAAAGTGAATGAGGTTCTGAATAGACTGCACCTGGC Direct Loss 0.946273760150143 0 NA NA prediction 0.892547520300286 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1053023 chr10:1053023 synonymous SNV . 0 21 hm7G_associated_SNPs_4031 0 0 1 1 2 GTPBP4 chr10:1052958 3'AG 1052958 Downstream 66bp 3949 chr10 1053023 1053023 1 + G T LUSC 1053023 + 1053003 1053043 41 GGAAATAAAGTGAATGAGGTGCTGAATAGACTGCACCTGGC GGAAATAAAGTGAATGAGGTTCTGAATAGACTGCACCTGGC Direct Loss 0.946273760150143 0 NA NA prediction 0.892547520300286 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1053023 chr10:1053023 synonymous SNV . 0 21 hm7G_associated_SNPs_4031 0 0 1 1 2 GTPBP4 chr10:1053068 5'GT 1053068 Upstream 46bp 3950 chrX 100088206 100088206 1 + G A UCEC 100088206 + 100088186 100088226 41 GGAATAGATGCACGAGGGATGGAGGCCCGAGCCATGGAGGC GGAATAGATGCACGAGGGATAGAGGCCCGAGCCATGGAGGC Direct Loss 0.946269105439482 0 NA NA prediction 0.892538210878965 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100088206 chrX:100088206 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_4034 0 0 0 0 1 CSTF2 chrX:100088169 3'AG 100088169 Downstream 38bp 3951 chr8 104427088 104427088 1 - C T ESCA 104427088 - 104427068 104427108 41 CACGTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGGCGG CACGTCCGGTATGAGAACCTAATAGCGGGCGTGAGCGGCGG Direct Loss 0.946259877423222 0 NA NA prediction 0.892519754846444 Functional Loss - SLC25A32 ENSG00000164933 CDS Human protein_coding chr8:104427088 chr8:104427088 synonymous SNV . 0 21 hm7G_associated_SNPs_4036 0 0 1 0 1 SLC25A32 chr8:104427012 5'GT 104427012 Upstream 77bp 3952 chr8 145160669 145160669 1 + G T LUAD 145160669 + 145160649 145160689 41 AGATGCCCACATCATTGGCAGGTGAGGCAGGCTGGGGGGGC AGATGCCCACATCATTGGCATGTGAGGCAGGCTGGGGGGGC Direct Loss 0.946256377197173 0 NA NA prediction 0.892512754394347 Functional Loss - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145160669 chr8:145160669 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4038 0 0 1 0 1 MAF1 chr8:145160669 5'GT 145160669 Upstream 1bp 3953 chr1 249210873 249210873 1 + G T LUAD 249210873 + 249210853 249210893 41 CTTGAGGTTCTGAATGCTATGGAGGAGGAAGAGTCCAACAA CTTGAGGTTCTGAATGCTATTGAGGAGGAAGAGTCCAACAA Direct Loss 0.946250152861799 0 NA NA prediction 0.892500305723597 Functional Loss - PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210873 chr1:249210873 nonsynonymous SNV 0.972 1 21 hm7G_associated_SNPs_4039 0 0 1 0 1 PGBD2 chr1:249210801 3'AG 249210801 Downstream 73bp 3954 chr6 43040600 43040600 1 + G T LIHC 43040600 + 43040580 43040620 41 CAGACGAAGGTGGCAGAGCTGCTTGGGGAGAGTGATGGTAG CAGACGAAGGTGGCAGAGCTTCTTGGGGAGAGTGATGGTAG Direct Loss 0.946241748720156 0 NA NA prediction 0.892483497440312 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43040600 chr6:43040600 synonymous SNV . 0 21 hm7G_associated_SNPs_4040 0 0 1 0 1 KLC4 chr6:43040562 3'AG 43040562 Downstream 39bp 3955 chr22 40755272 40755272 1 + G A BRCA 40755272 + 40755252 40755292 41 TTTCTTTCCAAGGTAGAGCAGCTTGACAAGATGGTGACAGA TTTCTTTCCAAGGTAGAGCAACTTGACAAGATGGTGACAGA Direct Loss 0.946232427202509 0 NA NA prediction 0.892464854405018 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40755272 chr22:40755272 synonymous SNV . 0 21 hm7G_associated_SNPs_4041 0 0 1 6 2 ADSL chr22:40755264 3'AG 40755264 Downstream 9bp 3956 chr22 40755272 40755272 1 + G A BRCA 40755272 + 40755252 40755292 41 TTTCTTTCCAAGGTAGAGCAGCTTGACAAGATGGTGACAGA TTTCTTTCCAAGGTAGAGCAACTTGACAAGATGGTGACAGA Direct Loss 0.946232427202509 0 NA NA prediction 0.892464854405018 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40755272 chr22:40755272 synonymous SNV . 0 21 hm7G_associated_SNPs_4041 0 0 1 6 2 ADSL chr22:40755310 5'GT 40755310 Upstream 39bp 3957 chr6 14131937 14131937 1 + G A UCEC 14131937 + 14131917 14131957 41 GCACTCTGCAGGACCCGGATGGGCAGAGAAACCTAAGTGGC GCACTCTGCAGGACCCGGATAGGCAGAGAAACCTAAGTGGC Direct Loss 0.946228194511189 0 NA NA prediction 0.892456389022378 Functional Loss - CD83 ENSG00000112149 CDS Human protein_coding chr6:14131937 chr6:14131937 nonsynonymous SNV 0.362 4 21 hm7G_associated_SNPs_4042 0 0 0 0 1 CD83 chr6:14131979 5'GT 14131979 Upstream 43bp 3958 chr2 109432538 109432538 1 + G A COAD 109432538 + 109432518 109432558 41 AATTTGCTTCCCAGAGAAATGATATTCAGGAGAAGTGTGTA AATTTGCTTCCCAGAGAAATAATATTCAGGAGAAGTGTGTA Direct Loss 0.946214169870504 0 NA NA prediction 0.892428339741008 Functional Loss - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109432538 chr2:109432538 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_4044 0 0 1 0 1 CCDC138 chr2:109432561 5'GT 109432561 Upstream 24bp 3959 chr1 161123883 161123883 1 + G A CESC 161123883 + 161123863 161123903 41 GAGTTGTGGGTGCAGCGACTGAAGGAGGAATATCAGTCCCT GAGTTGTGGGTGCAGCGACTAAAGGAGGAATATCAGTCCCT Direct Loss 0.946208958327657 0 NA NA prediction 0.892417916655315 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161123883 chr1:161123883 synonymous SNV . 0 21 hm7G_associated_SNPs_4046 0 0 1 0 1 UFC1 chr1:161123910 5'GT 161123910 Upstream 28bp 3960 chr5 68492913 68492913 1 + G A LUSC 68492913 + 68492893 68492933 41 ACTGCACTTAAAAAAAACCTGGAGAAAATTAGCAGACAGTC ACTGCACTTAAAAAAAACCTAGAGAAAATTAGCAGACAGTC Direct Loss 0.946208930772795 0 NA NA prediction 0.892417861545591 Functional Loss - CENPH ENSG00000153044 CDS Human protein_coding chr5:68492913 chr5:68492913 synonymous SNV . 0 21 hm7G_associated_SNPs_4047 0 0 1 0 2 CENPH chr5:68492880 3'AG 68492880 Downstream 34bp 3961 chr5 68492913 68492913 1 + G A LUSC 68492913 + 68492893 68492933 41 ACTGCACTTAAAAAAAACCTGGAGAAAATTAGCAGACAGTC ACTGCACTTAAAAAAAACCTAGAGAAAATTAGCAGACAGTC Direct Loss 0.946208930772795 0 NA NA prediction 0.892417861545591 Functional Loss - CENPH ENSG00000153044 CDS Human protein_coding chr5:68492913 chr5:68492913 synonymous SNV . 0 21 hm7G_associated_SNPs_4047 0 0 1 0 2 CENPH chr5:68492936 5'GT 68492936 Upstream 24bp 3962 chr2 70122304 70122304 1 + G A UCEC 70122304 + 70122284 70122324 41 CAGGTCTCGGGAGAGAGATCGGAGAAGGAGCCGCTCGCGAT CAGGTCTCGGGAGAGAGATCAGAGAAGGAGCCGCTCGCGAT Direct Loss 0.946205855766958 0 NA NA prediction 0.892411711533916 Functional Loss - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122304 chr2:70122304 nonsynonymous SNV 0.992 2 21 hm7G_associated_SNPs_4049 0 0 1 0 2 SNRNP27 chr2:70122226 3'AG 70122226 Downstream 79bp 3963 chr2 70122304 70122304 1 + G A UCEC 70122304 + 70122284 70122324 41 CAGGTCTCGGGAGAGAGATCGGAGAAGGAGCCGCTCGCGAT CAGGTCTCGGGAGAGAGATCAGAGAAGGAGCCGCTCGCGAT Direct Loss 0.946205855766958 0 NA NA prediction 0.892411711533916 Functional Loss - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70122304 chr2:70122304 nonsynonymous SNV 0.992 2 21 hm7G_associated_SNPs_4049 0 0 1 0 2 SNRNP27 chr2:70122346 5'GT 70122346 Upstream 43bp 3964 chr3 128755858 128755858 1 + G A HNSC 128755858 + 128755838 128755878 41 GTGGAAGAGAATGAGCACCTGAGGCTGGAGCTGCAGATGGT GTGGAAGAGAATGAGCACCTAAGGCTGGAGCTGCAGATGGT Direct Loss 0.946205384076979 0 NA NA prediction 0.892410768153959 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128755858 chr3:128755858 synonymous SNV . 0 21 hm7G_associated_SNPs_4050 0 0 0 0 1 EFCC1 chr3:128755820 3'AG 128755820 Downstream 39bp 3965 chr22 21334411 21334411 1 + G A BLCA 21334411 + 21334391 21334431 41 GCCATCCGGAAGCGGGAGGTGGAGTGAGTGTGGGTGTGGGA GCCATCCGGAAGCGGGAGGTAGAGTGAGTGTGGGTGTGGGA Direct Loss 0.946200514471017 0 NA NA prediction 0.892401028942035 Functional Loss - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21334411 chr22:21334411 synonymous SNV . 0 21 hm7G_associated_SNPs_4051 0 0 0 0 1 AIFM3 chr22:21334413 5'GT 21334413 Upstream 3bp 3966 chr19 57746292 57746292 1 + G A UCEC 57746292 + 57746272 57746312 41 CACTGGACTACTTGCCGCCAGAAATGATTGAGGGGAGAACA CACTGGACTACTTGCCGCCAAAAATGATTGAGGGGAGAACA Direct Loss 0.946156832977358 0 NA NA prediction 0.892313665954715 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57746292 chr19:57746292 nonsynonymous SNV 0.973 4 21 hm7G_associated_SNPs_4054 0 0 0 0 1 AURKC chr19:57746252 3'AG 57746252 Downstream 41bp 3967 chr3 12560662 12560662 1 + G T LUAD 12560662 + 12560642 12560682 41 TTTCGAAGCAAGGGCTGGGTGCCCAAAGTGGGACTCAAGTA TTTCGAAGCAAGGGCTGGGTTCCCAAAGTGGGACTCAAGTA Direct Loss 0.946138949960779 0 NA NA prediction 0.892277899921559 Functional Loss - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12560662 chr3:12560662 synonymous SNV . 0 21 hm7G_associated_SNPs_4060 0 0 1 0 1 TSEN2 chr3:12560696 5'GT 12560696 Upstream 35bp 3968 chr11 47433996 47433996 1 + G A ACC 47433996 + 47433976 47434016 41 GGAGAAGATGTTCCTGGACAGCAAGGAGGAGGGGACCAGCC GGAGAAGATGTTCCTGGACAACAAGGAGGAGGGGACCAGCC Direct Loss 0.946131526978851 0 NA NA prediction 0.892263053957702 Functional Loss - SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47433996 chr11:47433996 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_4061 0 0 1 0 2 SLC39A13 chr11:47433897 3'AG 47433897 Downstream 100bp 3969 chr11 47433996 47433996 1 + G A ACC 47433996 + 47433976 47434016 41 GGAGAAGATGTTCCTGGACAGCAAGGAGGAGGGGACCAGCC GGAGAAGATGTTCCTGGACAACAAGGAGGAGGGGACCAGCC Direct Loss 0.946131526978851 0 NA NA prediction 0.892263053957702 Functional Loss - SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47433996 chr11:47433996 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_4061 0 0 1 0 2 SLC39A13 chr11:47434018 5'GT 47434018 Upstream 23bp 3970 chr2 131103936 131103936 1 + G C LUSC 131103936 + 131103916 131103956 41 TCCCTGCCTGCAGTGTACATGATCCGTCTGGGCACGCTGGA TCCCTGCCTGCAGTGTACATCATCCGTCTGGGCACGCTGGA Direct Loss 0.946125249633554 0 NA NA prediction 0.892250499267108 Functional Loss - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103936 chr2:131103936 stoploss 0.913 1 21 hm7G_associated_SNPs_4063 0 0 1 0 1 IMP4 chr2:131103847 3'AG 131103847 Downstream 90bp 3971 chrX 118586052 118586052 1 + G A CESC 118586052 + 118586032 118586072 41 GACTGCTTCCGGCAGATAGTGAAGGCCCAGGGGGTCCTGGG GACTGCTTCCGGCAGATAGTAAAGGCCCAGGGGGTCCTGGG Direct Loss 0.946118546411871 0 NA NA prediction 0.892237092823742 Functional Loss - SLC25A43 ENSG00000077713 CDS Human protein_coding chrX:118586052 chrX:118586052 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_4065 0 0 0 0 1 SLC25A43 chrX:118585972 3'AG 118585972 Downstream 81bp 3972 chr19 18731229 18731229 1 + G A CESC 18731229 + 18731209 18731249 41 TTCCTGCAGCCTCTGACCCTGGAGCAGCACAAGGGCTTCAT TTCCTGCAGCCTCTGACCCTAGAGCAGCACAAGGGCTTCAT Direct Loss 0.946109332694538 0 NA NA prediction 0.892218665389077 Functional Loss - TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18731229 chr19:18731229 synonymous SNV . 0 21 hm7G_associated_SNPs_4066 0 0 1 0 1 TMEM59L chr19:18731218 3'AG 18731218 Downstream 12bp 3973 chr2 239306306 239306306 1 + G A MESO 239306306 + 239306286 239306326 41 AGGCAGCACGCCGAGGCCCTGCAGCAGGAGCAGAGGTGGGG AGGCAGCACGCCGAGGCCCTACAGCAGGAGCAGAGGTGGGG Direct Loss 0.946103849979772 0 NA NA prediction 0.892207699959543 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239306306 chr2:239306306 synonymous SNV . 0 21 hm7G_associated_SNPs_4067 0 0 0 0 1 TRAF3IP1 chr2:239306320 5'GT 239306320 Upstream 15bp 3974 chr11 66610645 66610645 1 + G C rs7570 66610645 + 66610625 66610665 41 CCCTTGTTCCCGCAGGACGTGCTGTGGCTGCAGGAGGTCTC CCCTTGTTCCCGCAGGACGTCCTGTGGCTGCAGGAGGTCTC Direct Loss 0.946099468588909 0 NA NA prediction 0.892198937177819 Functional Loss - C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66610645 chr11:66610645 synonymous SNV . 0 21 hm7G_associated_SNPs_4068 0 1 1 0 1 C11orf80 chr11:66610640 3'AG 66610640 Downstream 6bp 3975 chr1 12820749 12820749 1 + G A KIRC 12820749 + 12820729 12820769 41 GAGCAGCTCAAGCAGAGACAGCTCACACCCAAGGCTGGCCT GAGCAGCTCAAGCAGAGACAACTCACACCCAAGGCTGGCCT Direct Loss 0.946090865618277 0 NA NA prediction 0.892181731236554 Functional Loss - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12820749 chr1:12820749 synonymous SNV . 0 21 hm7G_associated_SNPs_4069 0 0 0 0 1 C1orf158 chr1:12820703 3'AG 12820703 Downstream 47bp 3976 chr7 1026358 1026358 1 + G A SKCM 1026358 + 1026338 1026378 41 GCCATTCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGT GCCATTCTGAGGACCCTCCTAGAGGCGCGGAGGCCCCACGT Direct Loss 0.94608823101891 0 NA NA prediction 0.892176462037819 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1026358 chr7:1026358 synonymous SNV . 0 21 hm7G_associated_SNPs_4070 0 0 1 0 2 CYP2W1 chr7:1026260 3'AG 1026260 Downstream 99bp 3977 chr7 1026358 1026358 1 + G A SKCM 1026358 + 1026338 1026378 41 GCCATTCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGT GCCATTCTGAGGACCCTCCTAGAGGCGCGGAGGCCCCACGT Direct Loss 0.94608823101891 0 NA NA prediction 0.892176462037819 Functional Loss - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1026358 chr7:1026358 synonymous SNV . 0 21 hm7G_associated_SNPs_4070 0 0 1 0 2 CYP2W1 chr7:1026433 5'GT 1026433 Upstream 76bp 3978 chr6 3019779 3019779 1 + G T rs144055532 3019779 + 3019759 3019799 41 TCAGCTTTGCTCCTGAAATTGCATCCGAAGAAGAAAGAAAG TCAGCTTTGCTCCTGAAATTTCATCCGAAGAAGAAAGAAAG Direct Loss 0.94607920626404 0 NA NA prediction 0.892158412528079 Functional Loss - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3019779 chr6:3019779 nonsynonymous SNV 0.008 0 21 hm7G_associated_SNPs_4072 0 0 1 0 1 NQO2 chr6:3019713 3'AG 3019713 Downstream 67bp 3979 chr16 15661873 15661873 1 + G A LGG 15661873 + 15661853 15661893 41 CAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCA CAGCTCTGCAAGGACATCATAGACTTGAAGCAGGAGCTGCA Direct Loss 0.946066524431103 0 NA NA prediction 0.892133048862206 Functional Loss - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15661873 chr16:15661873 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4077 0 0 1 0 2 C16orf45 chr16:15661840 3'AG 15661840 Downstream 34bp 3980 chr16 15661873 15661873 1 + G A LGG 15661873 + 15661853 15661893 41 CAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGCTGCA CAGCTCTGCAAGGACATCATAGACTTGAAGCAGGAGCTGCA Direct Loss 0.946066524431103 0 NA NA prediction 0.892133048862206 Functional Loss - C16orf45 ENSG00000166780 CDS Human protein_coding chr16:15661873 chr16:15661873 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4077 0 0 1 0 2 C16orf45 chr16:15661913 5'GT 15661913 Upstream 41bp 3981 chr17 9545044 9545044 1 + G T CESC 9545044 + 9545024 9545064 41 TCTTTCCTGAATTCCAGATTGCTTACTGGGAAGTATTTGAT TCTTTCCTGAATTCCAGATTTCTTACTGGGAAGTATTTGAT Direct Loss 0.946066058192807 0 NA NA prediction 0.892132116385613 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9545044 chr17:9545044 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4078 0 0 0 0 1 CFAP52 chr17:9545041 3'AG 9545041 Downstream 4bp 3982 chr10 22616899 22616899 1 + G C CESC 22616899 + 22616879 22616919 41 CTGCCAATGGCTCTAATGAAGATAGAGGAGAGGTTGCAGAT CTGCCAATGGCTCTAATGAACATAGAGGAGAGGTTGCAGAT Direct Loss 0.946058449474382 0 NA NA prediction 0.892116898948763 Functional Loss - BMI1;COMMD3-BMI1 ENSG00000168283;ENSG00000269897 CDS Human other chr10:22616899 chr10:22616899 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4080 0 0 1 0 2 BMI1;COMMD3-BMI1 chr10:22616879 3'AG 22616879 Downstream 21bp 3983 chr10 22616899 22616899 1 + G C CESC 22616899 + 22616879 22616919 41 CTGCCAATGGCTCTAATGAAGATAGAGGAGAGGTTGCAGAT CTGCCAATGGCTCTAATGAACATAGAGGAGAGGTTGCAGAT Direct Loss 0.946058449474382 0 NA NA prediction 0.892116898948763 Functional Loss - BMI1;COMMD3-BMI1 ENSG00000168283;ENSG00000269897 CDS Human other chr10:22616899 chr10:22616899 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4080 0 0 1 0 2 BMI1;COMMD3-BMI1 chr10:22616987 5'GT 22616987 Upstream 89bp 3984 chr17 33319597 33319597 1 + G A LUAD 33319597 + 33319577 33319617 41 TTCAAAGCCTCGCGCAACCTGCAGGATGTGGTGGAGCGGGT TTCAAAGCCTCGCGCAACCTACAGGATGTGGTGGAGCGGGT Direct Loss 0.94603254583217 0 NA NA prediction 0.89206509166434 Functional Loss - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33319597 chr17:33319597 synonymous SNV . 0 21 hm7G_associated_SNPs_4083 0 0 1 0 1 LIG3 chr17:33319543 3'AG 33319543 Downstream 55bp 3985 chr2 67637075 67637075 1 + G A BLCA 67637075 + 67637055 67637095 41 AAAATAGAAAGTGTTCTCCTGAAGAAATTCAGAGAAAAAGA AAAATAGAAAGTGTTCTCCTAAAGAAATTCAGAGAAAAAGA Direct Loss 0.946025443046962 0 NA NA prediction 0.892050886093924 Functional Loss - ETAA1 ENSG00000143971 CDS Human protein_coding chr2:67637075 chr2:67637075 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4085 0 0 1 0 1 ETAA1 chr2:67637043 3'AG 67637043 Downstream 33bp 3986 chr7 99013763 99013763 1 + G C CESC 99013763 + 99013743 99013783 41 CTCTTTGTTTCTCCCCAGCTGAAACAGAACCGCATGAGGGA CTCTTTGTTTCTCCCCAGCTCAAACAGAACCGCATGAGGGA Direct Loss 0.946022763185827 0 NA NA prediction 0.892045526371653 Functional Loss - BUD31 ENSG00000106245 CDS Human protein_coding chr7:99013763 chr7:99013763 nonsynonymous SNV 0.992 2 21 hm7G_associated_SNPs_4086 0 0 1 0 1 BUD31 chr7:99013761 3'AG 99013761 Downstream 3bp 3987 chr6 139101061 139101061 1 + G A BLCA 139101061 + 139101041 139101081 41 GATGTCTCAGATGTTCAGGAGATGGAGAGAGGGCTGCTCAG GATGTCTCAGATGTTCAGGAAATGGAGAGAGGGCTGCTCAG Direct Loss 0.946018884004767 0 NA NA prediction 0.892037768009533 Functional Loss - CCDC28A ENSG00000024862 CDS Human protein_coding chr6:139101061 chr6:139101061 synonymous SNV . 0 21 hm7G_associated_SNPs_4087 0 0 1 0 1 CCDC28A chr6:139101122 5'GT 139101122 Upstream 62bp 3988 chr20 44678342 44678342 1 + G A LUSC 44678342 + 44678322 44678362 41 CTCTCACTGACCTCCCAGCTGAAGGCGGGGAAGGGCCTGAC CTCTCACTGACCTCCCAGCTAAAGGCGGGGAAGGGCCTGAC Direct Loss 0.945998326615711 0 NA NA prediction 0.891996653231422 Functional Loss - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44678342 chr20:44678342 synonymous SNV . 0 21 hm7G_associated_SNPs_4088 0 0 0 0 1 SLC12A5 chr20:44678261 3'AG 44678261 Downstream 82bp 3989 chr3 14708357 14708357 1 + G C HNSC 14708357 + 14708337 14708377 41 ACCCTATTATCTGAAGATATGAGAAAAGAACTTCAGCGCCA ACCCTATTATCTGAAGATATCAGAAAAGAACTTCAGCGCCA Direct Loss 0.945978765681743 0 NA NA prediction 0.891957531363486 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708357 chr3:14708357 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4092 0 0 1 0 2 CCDC174 chr3:14708312 3'AG 14708312 Downstream 46bp 3990 chr3 14708357 14708357 1 + G C HNSC 14708357 + 14708337 14708377 41 ACCCTATTATCTGAAGATATGAGAAAAGAACTTCAGCGCCA ACCCTATTATCTGAAGATATCAGAAAAGAACTTCAGCGCCA Direct Loss 0.945978765681743 0 NA NA prediction 0.891957531363486 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708357 chr3:14708357 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4092 0 0 1 0 2 CCDC174 chr3:14708454 5'GT 14708454 Upstream 98bp 3991 chrX 9912854 9912854 1 + G A UCEC 9912854 + 9912834 9912874 41 CGGATGTTCATTGGAGACCTGGACAAAGTGGTGAACCTCCT CGGATGTTCATTGGAGACCTAGACAAAGTGGTGAACCTCCT Direct Loss 0.945977606704677 0 NA NA prediction 0.891955213409355 Functional Loss - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912854 chrX:9912854 synonymous SNV . 0 21 hm7G_associated_SNPs_4093 0 0 0 0 1 SHROOM2 chrX:9912953 5'GT 9912953 Upstream 100bp 3992 chr19 15164702 15164702 1 + G T BLCA 15164702 + 15164682 15164722 41 GAGAATCTCTTCGAGGCCCTGAACAACAAGAACTGCCAGGC GAGAATCTCTTCGAGGCCCTTAACAACAAGAACTGCCAGGC Direct Loss 0.945968424172234 0 NA NA prediction 0.891936848344467 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164702 chr19:15164702 synonymous SNV . 0 21 hm7G_associated_SNPs_4095 0 0 0 0 1 CASP14 chr19:15164769 5'GT 15164769 Upstream 68bp 3993 chr16 450236 450236 1 + G A HNSC 450236 + 450216 450256 41 CAGGAATGTCATCCACGCCAGCGACTCCGTGGAGGGGGCCC CAGGAATGTCATCCACGCCAACGACTCCGTGGAGGGGGCCC Direct Loss 0.945967865599635 0 NA NA prediction 0.891935731199269 Functional Loss - NME4 ENSG00000103202 CDS Human protein_coding chr16:450236 chr16:450236 nonsynonymous SNV 0.032 2 21 hm7G_associated_SNPs_4096 0 0 1 0 1 NME4 chr16:450219 3'AG 450219 Downstream 18bp 3994 chr17 3572438 3572438 1 + G T rs150979622 3572438 + 3572418 3572458 41 GAGGCCGAGCCCGGGCTGGTGCGATGGCCGCGGTGGTGGCC GAGGCCGAGCCCGGGCTGGTTCGATGGCCGCGGTGGTGGCC Direct Loss 0.945967702227942 0 NA NA prediction 0.891935404455884 Functional Loss - P2RX5-TAX1BP3 ENSG00000127774;ENSG00000257950 UTR5;UTR3 Human other chr17:3572438 chr17:3572438 . . 0 21 hm7G_associated_SNPs_4097 0 0 1 0 1 P2RX5-TAX1BP3 chr17:3572392 3'AG 3572392 Downstream 47bp 3995 chr5 150400293 150400293 1 + G T UCEC 150400293 + 150400273 150400313 41 TCGCAGAGCCGGGGACAAGAGAAGTCGAAGGTGAGTGAGCC TCGCAGAGCCGGGGACAAGATAAGTCGAAGGTGAGTGAGCC Direct Loss 0.945953776427483 0 NA NA prediction 0.891907552854966 Functional Loss - GPX3 ENSG00000211445 CDS Human protein_coding chr5:150400293 chr5:150400293 unknown 0.948 0 21 hm7G_associated_SNPs_4099 0 0 1 0 1 GPX3 chr5:150400302 5'GT 150400302 Upstream 10bp 3996 chr17 27380467 27380467 1 + G A SKCM 27380467 + 27380447 27380487 41 TAGGAGGCATAGTGCGTGACGGAGAGAAGGTGGTGGAGATA TAGGAGGCATAGTGCGTGACAGAGAGAAGGTGGTGGAGATA Direct Loss 0.9459467048605 0 NA NA prediction 0.891893409721001 Functional Loss - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27380467 chr17:27380467 nonsynonymous SNV 0.709 4 21 hm7G_associated_SNPs_4100 0 0 1 0 1 PIPOX chr17:27380431 3'AG 27380431 Downstream 37bp 3997 chr10 94835711 94835711 1 + G T UCEC 94835711 + 94835691 94835731 41 AAAGTGCGAGAAGAGCTGAAGAGTAAGGTAGGGAGACTGGG AAAGTGCGAGAAGAGCTGAATAGTAAGGTAGGGAGACTGGG Direct Loss 0.945942731370214 0 NA NA prediction 0.891885462740428 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94835711 chr10:94835711 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_4102 0 0 0 0 1 CYP26A1 chr10:94835717 5'GT 94835717 Upstream 7bp 3998 chr7 127240323 127240323 1 + G C BLCA 127240323 + 127240303 127240343 41 CAAGTTTGCCCTCAACTTCTGTATCGAGCTTCAGGGGAGCA CAAGTTTGCCCTCAACTTCTCTATCGAGCTTCAGGGGAGCA Direct Loss 0.945940276815608 0 NA NA prediction 0.891880553631217 Functional Loss - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127240323 chr7:127240323 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4103 0 0 0 0 2 FSCN3 chr7:127240248 3'AG 127240248 Downstream 76bp 3999 chr7 127240323 127240323 1 + G C BLCA 127240323 + 127240303 127240343 41 CAAGTTTGCCCTCAACTTCTGTATCGAGCTTCAGGGGAGCA CAAGTTTGCCCTCAACTTCTCTATCGAGCTTCAGGGGAGCA Direct Loss 0.945940276815608 0 NA NA prediction 0.891880553631217 Functional Loss - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127240323 chr7:127240323 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4103 0 0 0 0 2 FSCN3 chr7:127240253 3'AG 127240253 Downstream 71bp 4000 chr1 161254188 161254188 1 + G T UCEC 161254188 + 161254168 161254208 41 AGATTGACATTGATCTGACAGCACCAGAAACAGAGAAGGCT AGATTGACATTGATCTGACATCACCAGAAACAGAGAAGGCT Direct Loss 0.945914407608111 0 NA NA prediction 0.891828815216222 Functional Loss - PCP4L1 ENSG00000248485 CDS Human protein_coding chr1:161254188 chr1:161254188 nonsynonymous SNV 0.954 4 21 hm7G_associated_SNPs_4104 0 0 0 0 1 PCP4L1 chr1:161254129 3'AG 161254129 Downstream 60bp 4001 chr19 36370068 36370068 1 + G T LUSC 36370068 + 36370048 36370088 41 CTCATCGTCCTCTCCATGCTGCTCCTGCGCAGGAAGAAGCC CTCATCGTCCTCTCCATGCTTCTCCTGCGCAGGAAGAAGCC Direct Loss 0.94590941233467 0 NA NA prediction 0.89181882466934 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370068 chr19:36370068 synonymous SNV . 0 21 hm7G_associated_SNPs_4106 0 0 1 0 2 APLP1 chr19:36369976 3'AG 36369976 Downstream 93bp 4002 chr19 36370068 36370068 1 + G T LUSC 36370068 + 36370048 36370088 41 CTCATCGTCCTCTCCATGCTGCTCCTGCGCAGGAAGAAGCC CTCATCGTCCTCTCCATGCTTCTCCTGCGCAGGAAGAAGCC Direct Loss 0.94590941233467 0 NA NA prediction 0.89181882466934 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370068 chr19:36370068 synonymous SNV . 0 21 hm7G_associated_SNPs_4106 0 0 1 0 2 APLP1 chr19:36370119 5'GT 36370119 Upstream 52bp 4003 chr3 128984620 128984620 1 + G A LUAD 128984620 + 128984600 128984640 41 ACCGAGTGGTCTTGGAGCATGAGGAGGTCCGGGCAGGTAGG ACCGAGTGGTCTTGGAGCATAAGGAGGTCCGGGCAGGTAGG Direct Loss 0.945901970440418 0 NA NA prediction 0.891803940880835 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128984620 chr3:128984620 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_4107 0 0 1 0 1 COPG1 chr3:128984635 5'GT 128984635 Upstream 16bp 4004 chr14 35550261 35550261 1 + G A BLCA 35550261 + 35550241 35550281 41 AAGAAGAAAACAGGATGTCTGAAGAAGCAGAAAAACAATAT AAGAAGAAAACAGGATGTCTAAAGAAGCAGAAAAACAATAT Direct Loss 0.945873793117725 0 NA NA prediction 0.891747586235451 Functional Loss - FAM177A1 ENSG00000151327 CDS Human protein_coding chr14:35550261 chr14:35550261 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4111 0 0 1 0 1 FAM177A1 chr14:35550228 3'AG 35550228 Downstream 34bp 4005 chr13 111973249 111973249 1 + G T HNSC 111973249 + 111973229 111973269 41 GCTGCAGCAATGGAATACGTGCTGGAAGTGAAGAACTCTCC GCTGCAGCAATGGAATACGTTCTGGAAGTGAAGAACTCTCC Direct Loss 0.945870766584913 0 NA NA prediction 0.891741533169826 Functional Loss - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111973249 chr13:111973249 synonymous SNV . 0 21 hm7G_associated_SNPs_4112 0 0 0 0 2 TEX29 chr13:111973204 3'AG 111973204 Downstream 46bp 4006 chr13 111973249 111973249 1 + G T HNSC 111973249 + 111973229 111973269 41 GCTGCAGCAATGGAATACGTGCTGGAAGTGAAGAACTCTCC GCTGCAGCAATGGAATACGTTCTGGAAGTGAAGAACTCTCC Direct Loss 0.945870766584913 0 NA NA prediction 0.891741533169826 Functional Loss - TEX29 ENSG00000153495 CDS Human protein_coding chr13:111973249 chr13:111973249 synonymous SNV . 0 21 hm7G_associated_SNPs_4112 0 0 0 0 2 TEX29 chr13:111973295 5'GT 111973295 Upstream 47bp 4007 chr1 170705232 170705232 1 + G T SARC 170705232 + 170705212 170705252 41 CATGTGCCAACAATAGCCCTGCACAGGGCATCAACATGGCC CATGTGCCAACAATAGCCCTTCACAGGGCATCAACATGGCC Direct Loss 0.945822896760841 0 NA NA prediction 0.891645793521683 Functional Loss - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170705232 chr1:170705232 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4114 0 0 0 1 1 PRRX1 chr1:170705189 3'AG 170705189 Downstream 44bp 4008 chr2 220285561 220285561 1 + G A BLCA 220285561 + 220285541 220285581 41 TGCCCTTAGGTGTCAGACCTGACCCAGGCAGCCAACAAGAA TGCCCTTAGGTGTCAGACCTAACCCAGGCAGCCAACAAGAA Direct Loss 0.945818369791165 0 NA NA prediction 0.891636739582331 Functional Loss - DES ENSG00000175084 CDS Human protein_coding chr2:220285561 chr2:220285561 synonymous SNV . 0 21 hm7G_associated_SNPs_4115 0 0 0 0 1 DES chr2:220285550 3'AG 220285550 Downstream 12bp 4009 chr20 60738631 60738631 1 + G A OV 60738631 + 60738611 60738651 41 GCAGGGCAGCCAGGGGAGCAGCATGATGGGGCAGCGGCCCA GCAGGGCAGCCAGGGGAGCAACATGATGGGGCAGCGGCCCA Direct Loss 0.945817430681248 0 NA NA prediction 0.891634861362495 Functional Loss - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60738631 chr20:60738631 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4116 0 0 1 0 1 SS18L1 chr20:60738678 5'GT 60738678 Upstream 48bp 4010 chr13 31495209 31495209 1 + G A UCEC 31495209 + 31495189 31495229 41 AAGATAAGAAGACAGATAGAGCAAGGGATGGACATGGTCAT AAGATAAGAAGACAGATAGAACAAGGGATGGACATGGTCAT Direct Loss 0.945807904877654 0 NA NA prediction 0.891615809755309 Functional Loss - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31495209 chr13:31495209 synonymous SNV . 0 21 hm7G_associated_SNPs_4117 0 0 0 0 2 MEDAG chr13:31495151 3'AG 31495151 Downstream 59bp 4011 chr13 31495209 31495209 1 + G A UCEC 31495209 + 31495189 31495229 41 AAGATAAGAAGACAGATAGAGCAAGGGATGGACATGGTCAT AAGATAAGAAGACAGATAGAACAAGGGATGGACATGGTCAT Direct Loss 0.945807904877654 0 NA NA prediction 0.891615809755309 Functional Loss - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31495209 chr13:31495209 synonymous SNV . 0 21 hm7G_associated_SNPs_4117 0 0 0 0 2 MEDAG chr13:31495263 5'GT 31495263 Upstream 55bp 4012 chr5 50685565 50685565 1 + G C BLCA 50685565 + 50685545 50685585 41 ACCCGCGTGCGGACTGTGCTGAACGAGAAGCAGCTGCACAC ACCCGCGTGCGGACTGTGCTCAACGAGAAGCAGCTGCACAC Direct Loss 0.945805364241068 0 NA NA prediction 0.891610728482136 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685565 chr5:50685565 synonymous SNV . 0 21 hm7G_associated_SNPs_4119 0 0 0 0 1 ISL1 chr5:50685480 3'AG 50685480 Downstream 86bp 4013 chr10 105139437 105139437 1 + G T COAD 105139437 + 105139417 105139457 41 AGGATGAAGAGGGAGAAAATGAAGAAGGAAAACCTAAAAAG AGGATGAAGAGGGAGAAAATTAAGAAGGAAAACCTAAAAAG Direct Loss 0.945803808005551 0 NA NA prediction 0.891607616011102 Functional Loss - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105139437 chr10:105139437 stopgain 1.000 1 21 hm7G_associated_SNPs_4120 0 0 1 0 2 TAF5 chr10:105139365 3'AG 105139365 Downstream 73bp 4014 chr10 105139437 105139437 1 + G T COAD 105139437 + 105139417 105139457 41 AGGATGAAGAGGGAGAAAATGAAGAAGGAAAACCTAAAAAG AGGATGAAGAGGGAGAAAATTAAGAAGGAAAACCTAAAAAG Direct Loss 0.945803808005551 0 NA NA prediction 0.891607616011102 Functional Loss - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105139437 chr10:105139437 stopgain 1.000 1 21 hm7G_associated_SNPs_4120 0 0 1 0 2 TAF5 chr10:105139528 5'GT 105139528 Upstream 92bp 4015 chr5 40852313 40852313 1 + G C LUSC 40852313 + 40852293 40852333 41 AAAGATGTCCTGTTATGTTTGAACATGGATAGAAGCAGAAA AAAGATGTCCTGTTATGTTTCAACATGGATAGAAGCAGAAA Direct Loss 0.945802243581221 0 NA NA prediction 0.891604487162441 Functional Loss - CARD6 ENSG00000132357 CDS Human protein_coding chr5:40852313 chr5:40852313 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4121 0 0 1 0 1 CARD6 chr5:40852276 3'AG 40852276 Downstream 38bp 4016 chr2 108999892 108999892 1 + G A SKCM 108999892 + 108999872 108999912 41 TGTGCTGGGGCTCCTGGCATGAACATGTGAAAGGATGGTGG TGTGCTGGGGCTCCTGGCATAAACATGTGAAAGGATGGTGG Direct Loss 0.945795521306303 0 NA NA prediction 0.891591042612606 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108999892 chr2:108999892 nonsynonymous SNV 0.865 0 21 hm7G_associated_SNPs_4122 0 0 0 0 1 SULT1C4 chr2:108999966 5'GT 108999966 Upstream 75bp 4017 chr11 13399940 13399940 1 + G A BLCA 13399940 + 13399920 13399960 41 TTCCAGGGGGAACCCGGGCTGGGGCAGGAAAAATAGGCCGA TTCCAGGGGGAACCCGGGCTAGGGCAGGAAAAATAGGCCGA Direct Loss 0.945781254804767 0 NA NA prediction 0.891562509609533 Functional Loss - ARNTL ENSG00000133794 CDS Human protein_coding chr11:13399940 chr11:13399940 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4123 0 0 0 0 1 ARNTL chr11:13399884 3'AG 13399884 Downstream 57bp 4018 chr20 31756990 31756990 1 + G A LUSC 31756990 + 31756970 31757010 41 CTTGTTCTCCTGTGCGGCGTGCTCACTGGGACCTCAGAGTC CTTGTTCTCCTGTGCGGCGTACTCACTGGGACCTCAGAGTC Direct Loss 0.945733321056032 0 NA NA prediction 0.891466642112063 Functional Loss - BPIFA2 ENSG00000131050 CDS Human protein_coding chr20:31756990 chr20:31756990 synonymous SNV . 0 21 hm7G_associated_SNPs_4124 0 0 0 0 1 BPIFA2 chr20:31756937 3'AG 31756937 Downstream 54bp 4019 chr4 78808377 78808377 1 + G A GBM 78808377 + 78808357 78808397 41 TTATTGTGTTTTGGTAGAATGCATCAGAGGTCAAAATAGCG TTATTGTGTTTTGGTAGAATACATCAGAGGTCAAAATAGCG Direct Loss 0.945728636397566 0 NA NA prediction 0.891457272795133 Functional Loss - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78808377 chr4:78808377 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4125 0 0 1 0 2 MRPL1 chr4:78808374 3'AG 78808374 Downstream 4bp 4020 chr4 78808377 78808377 1 + G A GBM 78808377 + 78808357 78808397 41 TTATTGTGTTTTGGTAGAATGCATCAGAGGTCAAAATAGCG TTATTGTGTTTTGGTAGAATACATCAGAGGTCAAAATAGCG Direct Loss 0.945728636397566 0 NA NA prediction 0.891457272795133 Functional Loss - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78808377 chr4:78808377 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4125 0 0 1 0 2 MRPL1 chr4:78808445 5'GT 78808445 Upstream 69bp 4021 chr16 15771771 15771771 1 + G A CESC 15771771 + 15771751 15771791 41 CAGAAATACATCAGAGAGCTGGAGCAAGCAAATGACGACCT CAGAAATACATCAGAGAGCTAGAGCAAGCAAATGACGACCT Direct Loss 0.945728473756833 0 NA NA prediction 0.891456947513665 Functional Loss - NDE1 ENSG00000072864 CDS Human protein_coding chr16:15771771 chr16:15771771 synonymous SNV . 0 21 hm7G_associated_SNPs_4126 0 0 1 0 1 NDE1 chr16:15771806 5'GT 15771806 Upstream 36bp 4022 chr3 10264479 10264479 1 + G T SARC 10264479 + 10264459 10264499 41 GATTTCATCCGGGTGGGGCAGCTGACAAAGCGAGTGGACAT GATTTCATCCGGGTGGGGCATCTGACAAAGCGAGTGGACAT Direct Loss 0.945720130106423 0 NA NA prediction 0.891440260212846 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10264479 chr3:10264479 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_4128 0 0 0 0 1 IRAK2 chr3:10264515 5'GT 10264515 Upstream 37bp 4023 chr14 70477622 70477622 1 + G A UCEC 70477622 + 70477602 70477642 41 ACTGGCTACTGCTGGTGTGTGCTGGTGGACACAGGGCGCCC ACTGGCTACTGCTGGTGTGTACTGGTGGACACAGGGCGCCC Direct Loss 0.945716223324582 0 NA NA prediction 0.891432446649165 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70477622 chr14:70477622 synonymous SNV . 0 21 hm7G_associated_SNPs_4129 0 0 1 0 1 SMOC1 chr14:70477663 5'GT 70477663 Upstream 42bp 4024 chr14 59970589 59970589 1 + G A rs367737327 59970589 + 59970569 59970609 41 TAGAACTGCTATGATCTTCTGGTCAGAAAGAAAAGACTTAT TAGAACTGCTATGATCTTCTAGTCAGAAAGAAAAGACTTAT Direct Loss 0.945706437294128 0 NA NA prediction 0.891412874588257 Functional Loss - JKAMP ENSG00000050130 CDS Human protein_coding chr14:59970589 chr14:59970589 synonymous SNV . 0 21 hm7G_associated_SNPs_4130 0 0 0 0 1 JKAMP chr14:59970572 3'AG 59970572 Downstream 18bp 4025 chr1 193111113 193111113 1 + G T SARC 193111113 + 193111093 193111133 41 AACAGAGGAGTTTTGTGGATGCTGAGGTAGATGTGACCCGA AACAGAGGAGTTTTGTGGATTCTGAGGTAGATGTGACCCGA Direct Loss 0.945704607103364 0 NA NA prediction 0.891409214206728 Functional Loss - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193111113 chr1:193111113 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4131 0 0 1 0 1 CDC73 chr1:193111196 5'GT 193111196 Upstream 84bp 4026 chr15 41059517 41059517 1 + G C PCPG 41059517 + 41059497 41059537 41 AGCATGACGGGGGTGGGCCAGACGCTGGTGTGGTGTCTGCA AGCATGACGGGGGTGGGCCACACGCTGGTGTGGTGTCTGCA Direct Loss 0.945699581337264 0 NA NA prediction 0.891399162674528 Functional Loss - GCHFR ENSG00000137880 CDS Human protein_coding chr15:41059517 chr15:41059517 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4132 0 0 1 0 1 GCHFR chr15:41059424 3'AG 41059424 Downstream 94bp 4027 chr2 207026140 207026140 1 + G A STAD 207026140 + 207026120 207026160 41 AAGACACTACAGGAAGTGGAGCTACAGATAGTAAAGATGAT AAGACACTACAGGAAGTGGAACTACAGATAGTAAAGATGAT Direct Loss 0.945695952629734 0 NA NA prediction 0.891391905259468 Functional Loss - EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207026140 chr2:207026140 nonsynonymous SNV 0.817 0 21 hm7G_associated_SNPs_4134 0 0 1 0 2 EEF1B2 chr2:207026070 3'AG 207026070 Downstream 71bp 4028 chr2 207026140 207026140 1 + G A STAD 207026140 + 207026120 207026160 41 AAGACACTACAGGAAGTGGAGCTACAGATAGTAAAGATGAT AAGACACTACAGGAAGTGGAACTACAGATAGTAAAGATGAT Direct Loss 0.945695952629734 0 NA NA prediction 0.891391905259468 Functional Loss - EEF1B2 ENSG00000114942 CDS Human protein_coding chr2:207026140 chr2:207026140 nonsynonymous SNV 0.817 0 21 hm7G_associated_SNPs_4134 0 0 1 0 2 EEF1B2 chr2:207026196 5'GT 207026196 Upstream 57bp 4029 chr15 43677998 43677998 1 + G C BLCA 43677998 + 43677978 43678018 41 TCCTTGACTAGCGCCTGATTGAGGAAGAGAACATGCTGGCA TCCTTGACTAGCGCCTGATTCAGGAAGAGAACATGCTGGCA Direct Loss 0.945630159948172 0 NA NA prediction 0.891260319896344 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43677998 chr15:43677998 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_4138 0 0 1 1 1 TUBGCP4 chr15:43677989 3'AG 43677989 Downstream 10bp 4030 chr7 30668274 30668274 1 + G A LUAD 30668274 + 30668254 30668294 41 TCCATGTACGAGAAGGAGATGAACAGAGAACAGTAAGTTGT TCCATGTACGAGAAGGAGATAAACAGAGAACAGTAAGTTGT Direct Loss 0.945628944840652 0 NA NA prediction 0.891257889681305 Functional Loss - GARS ENSG00000106105 CDS Human protein_coding chr7:30668274 chr7:30668274 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4139 0 0 1 0 2 GARS chr7:30668176 3'AG 30668176 Downstream 99bp 4031 chr7 30668274 30668274 1 + G A LUAD 30668274 + 30668254 30668294 41 TCCATGTACGAGAAGGAGATGAACAGAGAACAGTAAGTTGT TCCATGTACGAGAAGGAGATAAACAGAGAACAGTAAGTTGT Direct Loss 0.945628944840652 0 NA NA prediction 0.891257889681305 Functional Loss - GARS ENSG00000106105 CDS Human protein_coding chr7:30668274 chr7:30668274 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4139 0 0 1 0 2 GARS chr7:30668285 5'GT 30668285 Upstream 12bp 4032 chrX 69652903 69652903 1 + G A rs35940902 69652903 + 69652883 69652923 41 GGCTTAGAAACAGCAGTGCTGCTGACAAGGATCAACAATTT GGCTTAGAAACAGCAGTGCTACTGACAAGGATCAACAATTT Direct Loss 0.945624786583145 0 NA NA prediction 0.891249573166291 Functional Loss - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69652903 chrX:69652903 synonymous SNV . 0 21 hm7G_associated_SNPs_4140 0 0 0 0 1 GDPD2 chrX:69652884 3'AG 69652884 Downstream 20bp 4033 chr14 67850119 67850119 1 + G C CESC 67850119 + 67850099 67850139 41 ATGCCGAAGTGGATGGAGATGATGATGCAGAAGAAATGGAA ATGCCGAAGTGGATGGAGATCATGATGCAGAAGAAATGGAA Direct Loss 0.945622070631755 0 NA NA prediction 0.891244141263511 Functional Loss - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67850119 chr14:67850119 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4142 0 0 1 0 1 EIF2S1 chr14:67850032 3'AG 67850032 Downstream 88bp 4034 chr6 13621044 13621044 1 + G A LIHC 13621044 + 13621024 13621064 41 CGGTGGATGGTCAGAAAGATGAAAACTAAGAAGTAAATCAA CGGTGGATGGTCAGAAAGATAAAAACTAAGAAGTAAATCAA Direct Loss 0.945619016785549 0 NA NA prediction 0.891238033571098 Functional Loss - NOL7 ENSG00000225921;ENSG00000268059 CDS Human other chr6:13621044 chr6:13621044 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4143 0 0 1 0 1 NOL7 chr6:13620986 3'AG 13620986 Downstream 59bp 4035 chr10 74671531 74671531 1 + G A SKCM 74671531 + 74671511 74671551 41 GCCACTCTTGCCTTGGATCTGAGAAAGGCTACCAGTGTGAA GCCACTCTTGCCTTGGATCTAAGAAAGGCTACCAGTGTGAA Direct Loss 0.945608595125853 0 NA NA prediction 0.891217190251706 Functional Loss - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74671531 chr10:74671531 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_4144 0 0 0 0 2 OIT3 chr10:74671475 3'AG 74671475 Downstream 57bp 4036 chr10 74671531 74671531 1 + G A SKCM 74671531 + 74671511 74671551 41 GCCACTCTTGCCTTGGATCTGAGAAAGGCTACCAGTGTGAA GCCACTCTTGCCTTGGATCTAAGAAAGGCTACCAGTGTGAA Direct Loss 0.945608595125853 0 NA NA prediction 0.891217190251706 Functional Loss - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74671531 chr10:74671531 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_4144 0 0 0 0 2 OIT3 chr10:74671597 5'GT 74671597 Upstream 67bp 4037 chr2 112942829 112942829 1 + G A LGG 112942829 + 112942809 112942849 41 GTGCCCCCAGGGGACCACATGCATCAACACCGGTGGAAGCT GTGCCCCCAGGGGACCACATACATCAACACCGGTGGAAGCT Direct Loss 0.945606877073634 0 NA NA prediction 0.891213754147267 Functional Loss - FBLN7 ENSG00000144152 CDS Human protein_coding chr2:112942829 chr2:112942829 nonsynonymous SNV 0.995 5 21 hm7G_associated_SNPs_4145 0 0 0 0 2 FBLN7 chr2:112942778 3'AG 112942778 Downstream 52bp 4038 chr2 112942829 112942829 1 + G A LGG 112942829 + 112942809 112942849 41 GTGCCCCCAGGGGACCACATGCATCAACACCGGTGGAAGCT GTGCCCCCAGGGGACCACATACATCAACACCGGTGGAAGCT Direct Loss 0.945606877073634 0 NA NA prediction 0.891213754147267 Functional Loss - FBLN7 ENSG00000144152 CDS Human protein_coding chr2:112942829 chr2:112942829 nonsynonymous SNV 0.995 5 21 hm7G_associated_SNPs_4145 0 0 0 0 2 FBLN7 chr2:112942916 5'GT 112942916 Upstream 88bp 4039 chr20 44567661 44567661 1 + G A UCEC 44567661 + 44567641 44567681 41 GGCCAATGAGAATCACGGCAGCCCCCGGGAGGAAGCGTCCC GGCCAATGAGAATCACGGCAACCCCCGGGAGGAAGCGTCCC Direct Loss 0.945521270339145 0 NA NA prediction 0.89104254067829 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44567661 chr20:44567661 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4151 0 0 1 0 1 PCIF1 chr20:44567620 3'AG 44567620 Downstream 42bp 4040 chr17 72281237 72281237 1 + G A SKCM 72281237 + 72281217 72281257 41 TAACCATGTCGAGGGGGGCTGGCCCAAGGACGTGAACCCCC TAACCATGTCGAGGGGGGCTAGCCCAAGGACGTGAACCCCC Direct Loss 0.945516453437104 0 NA NA prediction 0.891032906874207 Functional Loss - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72281237 chr17:72281237 stopgain 0.998 1 21 hm7G_associated_SNPs_4152 0 0 0 0 1 DNAI2 chr17:72281179 3'AG 72281179 Downstream 59bp 4041 chr4 1746548 1746548 1 + G A LGG 1746548 + 1746528 1746568 41 TCCAGTCGCTGGAGAAGACAGTGGAGCAGAAGGTGGGTGCG TCCAGTCGCTGGAGAAGACAATGGAGCAGAAGGTGGGTGCG Direct Loss 0.9455082303026 0 NA NA prediction 0.891016460605199 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1746548 chr4:1746548 nonsynonymous SNV 0.477 2 21 hm7G_associated_SNPs_4153 0 0 1 0 1 TACC3 chr4:1746559 5'GT 1746559 Upstream 12bp 4042 chr8 38835610 38835610 1 + G A CESC 38835610 + 38835590 38835630 41 CCAAACAGCGAGGGGGCAAAGAACTGGGGATGAAGGATTCA CCAAACAGCGAGGGGGCAAAAAACTGGGGATGAAGGATTCA Direct Loss 0.945506209828808 0 NA NA prediction 0.891012419657617 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38835610 chr8:38835610 nonsynonymous SNV 0.957 5 21 hm7G_associated_SNPs_4154 0 0 0 0 1 HTRA4 chr8:38835666 5'GT 38835666 Upstream 57bp 4043 chr4 147561043 147561043 1 + G T BLCA 147561043 + 147561023 147561063 41 ATATATTCGGCGGGCTGGATGAGAGTCTGCTGGCCCGCGCC ATATATTCGGCGGGCTGGATTAGAGTCTGCTGGCCCGCGCC Direct Loss 0.945503403020346 0 NA NA prediction 0.891006806040692 Functional Loss - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147561043 chr4:147561043 stopgain 1.000 1 21 hm7G_associated_SNPs_4155 0 0 0 0 1 POU4F2 chr4:147561019 3'AG 147561019 Downstream 25bp 4044 chr16 69481076 69481076 1 + G A rs181501333 69481076 + 69481056 69481096 41 CCTGGAGGAGAAGAGGTTCTGCTGGAACAAGCTGGTGTAGA CCTGGAGGAGAAGAGGTTCTACTGGAACAAGCTGGTGTAGA Direct Loss 0.945503054780741 0 NA NA prediction 0.891006109561482 Functional Loss - CYB5B ENSG00000103018 CDS Human protein_coding chr16:69481076 chr16:69481076 synonymous SNV . 0 21 hm7G_associated_SNPs_4156 0 0 1 0 1 CYB5B chr16:69481053 3'AG 69481053 Downstream 24bp 4045 chr2 178977522 178977522 1 + G A BLCA 178977522 + 178977502 178977542 41 TCACAGGCCTGCAGGGCCATGGAGGAGATGCATGGCCAGTG TCACAGGCCTGCAGGGCCATAGAGGAGATGCATGGCCAGTG Direct Loss 0.945502345357911 0 NA NA prediction 0.891004690715823 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178977522 chr2:178977522 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4157 0 0 1 0 1 RBM45 chr2:178977573 5'GT 178977573 Upstream 52bp 4046 chr3 129249750 129249750 1 + G A SKCM 129249750 + 129249730 129249770 41 CTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGT CTGTGGTCCTTGGTGGTCCTAGCCATCGAGCGGTACGTGGT Direct Loss 0.945492269832616 0 NA NA prediction 0.890984539665233 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129249750 chr3:129249750 synonymous SNV . 0 21 hm7G_associated_SNPs_4158 0 0 0 0 1 RHO chr3:129249719 3'AG 129249719 Downstream 32bp 4047 chr14 90738640 90738640 1 + G C CESC 90738640 + 90738620 90738660 41 ATCTGTACAGAAGCTGGTCTGATGGCCTTAAGAGAACGTAG ATCTGTACAGAAGCTGGTCTCATGGCCTTAAGAGAACGTAG Direct Loss 0.945488450367264 0 NA NA prediction 0.890976900734528 Functional Loss - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90738640 chr14:90738640 synonymous SNV . 0 21 hm7G_associated_SNPs_4161 0 0 0 0 1 PSMC1 chr14:90738617 3'AG 90738617 Downstream 24bp 4048 chr19 47769944 47769944 1 + G A UCEC 47769944 + 47769924 47769964 41 GGAGCGGTCGGAGTACCTGCGCTGGAAGCAGGAGAGGGAGA GGAGCGGTCGGAGTACCTGCACTGGAAGCAGGAGAGGGAGA Direct Loss 0.945487732882303 0 NA NA prediction 0.890975465764606 Functional Loss - CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47769944 chr19:47769944 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4162 0 0 1 0 1 CCDC9 chr19:47769868 3'AG 47769868 Downstream 77bp 4049 chr7 107531728 107531728 1 + G A UCEC 107531728 + 107531708 107531748 41 AGTCGTGTGTACTGCTCCTTGGCCAAGGTGAGGGCCGAGTA AGTCGTGTGTACTGCTCCTTAGCCAAGGTGAGGGCCGAGTA Direct Loss 0.945474550573388 0 NA NA prediction 0.890949101146776 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107531728 chr7:107531728 synonymous SNV . 0 21 hm7G_associated_SNPs_4163 0 0 1 2 1 DLD chr7:107531734 5'GT 107531734 Upstream 7bp 4050 chr1 7837362 7837362 1 + G A SKCM 7837362 + 7837342 7837382 41 CAAGTTGAAGAGGAAATATTGGTGGAAGAATTGCAAGGTAA CAAGTTGAAGAGGAAATATTAGTGGAAGAATTGCAAGGTAA Direct Loss 0.945471461147553 0 NA NA prediction 0.890942922295105 Functional Loss - VAMP3 ENSG00000049245 CDS Human protein_coding chr1:7837362 chr1:7837362 stopgain 0.999 1 21 hm7G_associated_SNPs_4165 0 0 1 0 1 VAMP3 chr1:7837378 5'GT 7837378 Upstream 17bp 4051 chr11 1955618 1955618 1 + G A LUSC 1955618 + 1955598 1955638 41 AGGAGGGCAGAGGACGACCTGAAGAAGAAGAAAGCTCTGTC AGGAGGGCAGAGGACGACCTAAAGAAGAAGAAAGCTCTGTC Direct Loss 0.945467301474278 0 NA NA prediction 0.890934602948556 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955618 chr11:1955618 synonymous SNV . 0 21 hm7G_associated_SNPs_4168 0 0 0 0 3 TNNT3 chr11:1955562 3'AG 1955562 Downstream 57bp 4052 chr11 1955618 1955618 1 + G A LUSC 1955618 + 1955598 1955638 41 AGGAGGGCAGAGGACGACCTGAAGAAGAAGAAAGCTCTGTC AGGAGGGCAGAGGACGACCTAAAGAAGAAGAAAGCTCTGTC Direct Loss 0.945467301474278 0 NA NA prediction 0.890934602948556 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955618 chr11:1955618 synonymous SNV . 0 21 hm7G_associated_SNPs_4168 0 0 0 0 3 TNNT3 chr11:1955608 3'AG 1955608 Downstream 11bp 4053 chr11 1955618 1955618 1 + G A LUSC 1955618 + 1955598 1955638 41 AGGAGGGCAGAGGACGACCTGAAGAAGAAGAAAGCTCTGTC AGGAGGGCAGAGGACGACCTAAAGAAGAAGAAAGCTCTGTC Direct Loss 0.945467301474278 0 NA NA prediction 0.890934602948556 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955618 chr11:1955618 synonymous SNV . 0 21 hm7G_associated_SNPs_4168 0 0 0 0 3 TNNT3 chr11:1955675 5'GT 1955675 Upstream 58bp 4054 chr17 36920378 36920378 1 + G A rs35705506 36920378 + 36920358 36920398 41 TTCTCCCTCTGCAGCGAGAAGGACAAAATCACCACCAGGAC TTCTCCCTCTGCAGCGAGAAAGACAAAATCACCACCAGGAC Direct Loss 0.945457616703768 0 NA NA prediction 0.890915233407535 Functional Loss - PSMB3 ENSG00000108294 CDS Human other chr17:36920378 chr17:36920378 synonymous SNV . 0 21 hm7G_associated_SNPs_4169 0 0 1 0 1 PSMB3 chr17:36920372 3'AG 36920372 Downstream 7bp 4055 chr18 72178086 72178086 1 + G A LUAD 72178086 + 72178066 72178106 41 CGATTCTGCCTCGAAGGCATGGAGGAGTCAGGCTCTGAGGG CGATTCTGCCTCGAAGGCATAGAGGAGTCAGGCTCTGAGGG Direct Loss 0.945455878459208 0 NA NA prediction 0.890911756918415 Functional Loss - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72178086 chr18:72178086 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4170 0 0 1 0 1 CNDP2 chr18:72178048 3'AG 72178048 Downstream 39bp 4056 chr12 110350823 110350823 1 + G T UCEC 110350823 + 110350803 110350843 41 GCCAAGGAGATGTGGGAAAAGAGAGAGGCAGAGTGGGCCCG GCCAAGGAGATGTGGGAAAATAGAGAGGCAGAGTGGGCCCG Direct Loss 0.94545345192738 0 NA NA prediction 0.89090690385476 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110350823 chr12:110350823 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4171 0 0 1 0 2 TCHP chr12:110350796 3'AG 110350796 Downstream 28bp 4057 chr12 110350823 110350823 1 + G T UCEC 110350823 + 110350803 110350843 41 GCCAAGGAGATGTGGGAAAAGAGAGAGGCAGAGTGGGCCCG GCCAAGGAGATGTGGGAAAATAGAGAGGCAGAGTGGGCCCG Direct Loss 0.94545345192738 0 NA NA prediction 0.89090690385476 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110350823 chr12:110350823 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4171 0 0 1 0 2 TCHP chr12:110350877 5'GT 110350877 Upstream 55bp 4058 chr2 101874356 101874356 1 + G A SKCM 101874356 + 101874336 101874376 41 ACGCCTCGCCAGATTGCACTGATGGACGTTGGAAACATGGG ACGCCTCGCCAGATTGCACTAATGGACGTTGGAAACATGGG Direct Loss 0.945433864840638 0 NA NA prediction 0.890867729681275 Functional Loss - CNOT11 ENSG00000158435 CDS Human protein_coding chr2:101874356 chr2:101874356 synonymous SNV . 0 21 hm7G_associated_SNPs_4173 0 0 1 0 1 CNOT11 chr2:101874417 5'GT 101874417 Upstream 62bp 4059 chr8 82670398 82670398 1 + G A SKCM 82670398 + 82670378 82670418 41 ATGAGTTGATGGCAGAACTTGAAGAATTGGAACAGGAGGAA ATGAGTTGATGGCAGAACTTAAAGAATTGGAACAGGAGGAA Direct Loss 0.945426443031046 0 NA NA prediction 0.890852886062091 Functional Loss - CHMP4C ENSG00000164695 CDS Human protein_coding chr8:82670398 chr8:82670398 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4175 0 0 1 0 1 CHMP4C chr8:82670377 3'AG 82670377 Downstream 22bp 4060 chr20 29847269 29847269 1 + G A SKCM 29847269 + 29847249 29847289 41 GCTTATTTTGATAGATGGATGGATCAGAAGGTGCTATTATG GCTTATTTTGATAGATGGATAGATCAGAAGGTGCTATTATG Direct Loss 0.945419619950066 0 NA NA prediction 0.890839239900132 Functional Loss - DEFB115 ENSG00000215547 CDS Human protein_coding chr20:29847269 chr20:29847269 stopgain 0.031 0 21 hm7G_associated_SNPs_4176 0 0 0 0 1 DEFB115 chr20:29847263 3'AG 29847263 Downstream 7bp 4061 chr17 66040016 66040016 1 + G A CESC 66040016 + 66039996 66040036 41 GATGAACAGACTCAGGTTGTGATTGATGCAGGAGCACTCGC GATGAACAGACTCAGGTTGTAATTGATGCAGGAGCACTCGC Direct Loss 0.945413525716077 0 NA NA prediction 0.890827051432155 Functional Loss - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66040016 chr17:66040016 synonymous SNV . 0 21 hm7G_associated_SNPs_4177 0 0 1 0 1 KPNA2 chr17:66039954 3'AG 66039954 Downstream 63bp 4062 chr1 2334515 2334515 1 + G A LUSC 2334515 + 2334495 2334535 41 ATCCCGTTCACACATGGGAAGAGAAGGTACAGAGGCAAGGA ATCCCGTTCACACATGGGAAAAGAAGGTACAGAGGCAAGGA Direct Loss 0.945412904036159 0 NA NA prediction 0.890825808072317 Functional Loss - RER1 ENSG00000157916 CDS Human protein_coding chr1:2334515 chr1:2334515 synonymous SNV . 0 21 hm7G_associated_SNPs_4178 0 0 1 0 1 RER1 chr1:2334474 3'AG 2334474 Downstream 42bp 4063 chr11 44072153 44072153 1 + G A LUSC 44072153 + 44072133 44072173 41 ACACCTTGCTTCAGTACCCTGATTGGAGAGGGCAGCCATTG ACACCTTGCTTCAGTACCCTAATTGGAGAGGGCAGCCATTG Direct Loss 0.945403121089038 0 NA NA prediction 0.890806242178077 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44072153 chr11:44072153 nonsynonymous SNV 0.009 2 21 hm7G_associated_SNPs_4179 0 0 0 0 2 ACCSL chr11:44072102 3'AG 44072102 Downstream 52bp 4064 chr11 44072153 44072153 1 + G A LUSC 44072153 + 44072133 44072173 41 ACACCTTGCTTCAGTACCCTGATTGGAGAGGGCAGCCATTG ACACCTTGCTTCAGTACCCTAATTGGAGAGGGCAGCCATTG Direct Loss 0.945403121089038 0 NA NA prediction 0.890806242178077 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44072153 chr11:44072153 nonsynonymous SNV 0.009 2 21 hm7G_associated_SNPs_4179 0 0 0 0 2 ACCSL chr11:44072172 5'GT 44072172 Upstream 20bp 4065 chr11 120180199 120180199 1 + G A STAD 120180199 + 120180179 120180219 41 TTGTCCATGGAGAAGGAGGTGGTGAGGGTCTGGTTCTGCAA TTGTCCATGGAGAAGGAGGTAGTGAGGGTCTGGTTCTGCAA Direct Loss 0.945399377382045 0 NA NA prediction 0.890798754764091 Functional Loss - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120180199 chr11:120180199 synonymous SNV . 0 21 hm7G_associated_SNPs_4180 0 0 0 0 2 POU2F3 chr11:120180134 3'AG 120180134 Downstream 66bp 4066 chr11 120180199 120180199 1 + G A STAD 120180199 + 120180179 120180219 41 TTGTCCATGGAGAAGGAGGTGGTGAGGGTCTGGTTCTGCAA TTGTCCATGGAGAAGGAGGTAGTGAGGGTCTGGTTCTGCAA Direct Loss 0.945399377382045 0 NA NA prediction 0.890798754764091 Functional Loss - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120180199 chr11:120180199 synonymous SNV . 0 21 hm7G_associated_SNPs_4180 0 0 0 0 2 POU2F3 chr11:120180295 5'GT 120180295 Upstream 97bp 4067 chr5 132085103 132085103 1 + G A SKCM 132085103 + 132085083 132085123 41 GGCTCGCTGCAAAAGTTAATGAAGAAGAGGAGGTATGCATC GGCTCGCTGCAAAAGTTAATAAAGAAGAGGAGGTATGCATC Direct Loss 0.945391420685474 0 NA NA prediction 0.890782841370947 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132085103 chr5:132085103 nonsynonymous SNV 0.109 4 21 hm7G_associated_SNPs_4182 0 0 0 0 2 CCNI2 chr5:132085040 3'AG 132085040 Downstream 64bp 4068 chr5 132085103 132085103 1 + G A SKCM 132085103 + 132085083 132085123 41 GGCTCGCTGCAAAAGTTAATGAAGAAGAGGAGGTATGCATC GGCTCGCTGCAAAAGTTAATAAAGAAGAGGAGGTATGCATC Direct Loss 0.945391420685474 0 NA NA prediction 0.890782841370947 Functional Loss - CCNI2 ENSG00000205089 CDS Human protein_coding chr5:132085103 chr5:132085103 nonsynonymous SNV 0.109 4 21 hm7G_associated_SNPs_4182 0 0 0 0 2 CCNI2 chr5:132085114 5'GT 132085114 Upstream 12bp 4069 chr17 46002810 46002810 1 + G A STAD 46002810 + 46002790 46002830 41 CTGCGTGCCCATGTGCGCCTGCACACTGGCGAGCGGCCCTT CTGCGTGCCCATGTGCGCCTACACACTGGCGAGCGGCCCTT Direct Loss 0.945381807771305 0 NA NA prediction 0.89076361554261 Functional Loss - SP2 ENSG00000167182 CDS Human protein_coding chr17:46002810 chr17:46002810 synonymous SNV . 0 21 hm7G_associated_SNPs_4183 0 0 1 0 2 SP2 chr17:46002714 3'AG 46002714 Downstream 97bp 4070 chr17 46002810 46002810 1 + G A STAD 46002810 + 46002790 46002830 41 CTGCGTGCCCATGTGCGCCTGCACACTGGCGAGCGGCCCTT CTGCGTGCCCATGTGCGCCTACACACTGGCGAGCGGCCCTT Direct Loss 0.945381807771305 0 NA NA prediction 0.89076361554261 Functional Loss - SP2 ENSG00000167182 CDS Human protein_coding chr17:46002810 chr17:46002810 synonymous SNV . 0 21 hm7G_associated_SNPs_4183 0 0 1 0 2 SP2 chr17:46002907 5'GT 46002907 Upstream 98bp 4071 chr2 106690412 106690412 1 + G A UCEC 106690412 + 106690392 106690432 41 GAATTCCTTGGCAGCCTGAAGCGCCAGAAGCGGCAGCTGTG GAATTCCTTGGCAGCCTGAAACGCCAGAAGCGGCAGCTGTG Direct Loss 0.945377559601078 0 NA NA prediction 0.890755119202155 Functional Loss - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690412 chr2:106690412 synonymous SNV . 0 21 hm7G_associated_SNPs_4184 0 0 0 0 2 C2orf40 chr2:106690342 3'AG 106690342 Downstream 71bp 4072 chr2 106690412 106690412 1 + G A UCEC 106690412 + 106690392 106690432 41 GAATTCCTTGGCAGCCTGAAGCGCCAGAAGCGGCAGCTGTG GAATTCCTTGGCAGCCTGAAACGCCAGAAGCGGCAGCTGTG Direct Loss 0.945377559601078 0 NA NA prediction 0.890755119202155 Functional Loss - C2orf40 ENSG00000119147 CDS Human protein_coding chr2:106690412 chr2:106690412 synonymous SNV . 0 21 hm7G_associated_SNPs_4184 0 0 0 0 2 C2orf40 chr2:106690499 5'GT 106690499 Upstream 88bp 4073 chr1 99127431 99127431 1 + G A rs547908660 99127431 + 99127411 99127451 41 CAGGCGGAGGTGCTGGATCTGGACGAGGACGAGGACGACCT CAGGCGGAGGTGCTGGATCTAGACGAGGACGAGGACGACCT Direct Loss 0.945370014272912 0 NA NA prediction 0.890740028545824 Functional Loss - SNX7 ENSG00000162627 CDS Human protein_coding chr1:99127431 chr1:99127431 synonymous SNV . 0 21 hm7G_associated_SNPs_4185 0 0 1 0 1 SNX7 chr1:99127467 5'GT 99127467 Upstream 37bp 4074 chr17 37790272 37790272 1 + G T rs144685420 37790272 + 37790252 37790292 41 GAAGATGAGGAGGAAGAGGAGGATGATGAAGAAGAGGAAGA GAAGATGAGGAGGAAGAGGATGATGATGAAGAAGAGGAAGA Direct Loss 0.945362130019062 0 NA NA prediction 0.890724260038124 Functional Loss - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37790272 chr17:37790272 nonsynonymous SNV 0.941 0 21 hm7G_associated_SNPs_4186 0 0 0 0 1 PPP1R1B chr17:37790339 5'GT 37790339 Upstream 68bp 4075 chr16 66885423 66885423 1 + G T COAD 66885423 + 66885403 66885443 41 CTTTTGGGGAGGCGGCCTCAGCACCTGATGGCCTGGCTGTG CTTTTGGGGAGGCGGCCTCATCACCTGATGGCCTGGCTGTG Direct Loss 0.945356135102697 0 NA NA prediction 0.890712270205395 Functional Loss - CA7 ENSG00000168748 CDS Human protein_coding chr16:66885423 chr16:66885423 nonsynonymous SNV 0.017 1 21 hm7G_associated_SNPs_4187 0 0 0 0 2 CA7 chr16:66885366 3'AG 66885366 Downstream 58bp 4076 chr16 66885423 66885423 1 + G T COAD 66885423 + 66885403 66885443 41 CTTTTGGGGAGGCGGCCTCAGCACCTGATGGCCTGGCTGTG CTTTTGGGGAGGCGGCCTCATCACCTGATGGCCTGGCTGTG Direct Loss 0.945356135102697 0 NA NA prediction 0.890712270205395 Functional Loss - CA7 ENSG00000168748 CDS Human protein_coding chr16:66885423 chr16:66885423 nonsynonymous SNV 0.017 1 21 hm7G_associated_SNPs_4187 0 0 0 0 2 CA7 chr16:66885461 5'GT 66885461 Upstream 39bp 4077 chr6 108840996 108840996 1 + G C BLCA 108840996 + 108840976 108841016 41 AAAGCAGAATACTGATGGATGATTTGGGGCTGAGCCAGGTA AAAGCAGAATACTGATGGATCATTTGGGGCTGAGCCAGGTA Direct Loss 0.945355364020967 0 NA NA prediction 0.890710728041934 Functional Loss - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108840996 chr6:108840996 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4188 0 0 0 0 2 AFG1L chr6:108840900 3'AG 108840900 Downstream 97bp 4078 chr6 108840996 108840996 1 + G C BLCA 108840996 + 108840976 108841016 41 AAAGCAGAATACTGATGGATGATTTGGGGCTGAGCCAGGTA AAAGCAGAATACTGATGGATCATTTGGGGCTGAGCCAGGTA Direct Loss 0.945355364020967 0 NA NA prediction 0.890710728041934 Functional Loss - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108840996 chr6:108840996 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4188 0 0 0 0 2 AFG1L chr6:108841013 5'GT 108841013 Upstream 18bp 4079 chr1 212220695 212220695 1 + G C rs114739826 212220695 + 212220675 212220715 41 GACGTAAAAGCTGGTGAGCTGATTGGAACATGCAAAGGTCA GACGTAAAAGCTGGTGAGCTCATTGGAACATGCAAAGGTCA Direct Loss 0.945336061705899 0 NA NA prediction 0.890672123411799 Functional Loss - DTL ENSG00000143476 CDS Human protein_coding chr1:212220695 chr1:212220695 synonymous SNV . 0 21 hm7G_associated_SNPs_4190 0 0 1 0 2 DTL chr1:212220639 3'AG 212220639 Downstream 57bp 4080 chr1 212220695 212220695 1 + G C rs114739826 212220695 + 212220675 212220715 41 GACGTAAAAGCTGGTGAGCTGATTGGAACATGCAAAGGTCA GACGTAAAAGCTGGTGAGCTCATTGGAACATGCAAAGGTCA Direct Loss 0.945336061705899 0 NA NA prediction 0.890672123411799 Functional Loss - DTL ENSG00000143476 CDS Human protein_coding chr1:212220695 chr1:212220695 synonymous SNV . 0 21 hm7G_associated_SNPs_4190 0 0 1 0 2 DTL chr1:212220759 5'GT 212220759 Upstream 65bp 4081 chr12 8248685 8248685 1 + G C BLCA 8248685 + 8248665 8248705 41 ATCCAACTGGGTCCAGTTCTGAATGGCATTGGCAGGACATT ATCCAACTGGGTCCAGTTCTCAATGGCATTGGCAGGACATT Direct Loss 0.945333090537684 0 NA NA prediction 0.890666181075368 Functional Loss - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8248685 chr12:8248685 stoploss 0.998 0 21 hm7G_associated_SNPs_4191 0 0 1 0 1 NECAP1 chr12:8248638 3'AG 8248638 Downstream 48bp 4082 chr3 14708387 14708387 1 + G A BRCA 14708387 + 14708367 14708407 41 CTTCAGCGCCAGCAATGGGAGGAAGAAGAAAGAGAGGCCCT CTTCAGCGCCAGCAATGGGAAGAAGAAGAAAGAGAGGCCCT Direct Loss 0.945328522726981 0 NA NA prediction 0.890657045453962 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708387 chr3:14708387 synonymous SNV . 0 21 hm7G_associated_SNPs_4193 0 0 1 0 2 CCDC174 chr3:14708312 3'AG 14708312 Downstream 76bp 4083 chr3 14708387 14708387 1 + G A BRCA 14708387 + 14708367 14708407 41 CTTCAGCGCCAGCAATGGGAGGAAGAAGAAAGAGAGGCCCT CTTCAGCGCCAGCAATGGGAAGAAGAAGAAAGAGAGGCCCT Direct Loss 0.945328522726981 0 NA NA prediction 0.890657045453962 Functional Loss - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14708387 chr3:14708387 synonymous SNV . 0 21 hm7G_associated_SNPs_4193 0 0 1 0 2 CCDC174 chr3:14708454 5'GT 14708454 Upstream 68bp 4084 chr17 36478041 36478041 1 + G C STAD 36478041 + 36478021 36478061 41 TATGACCGGTTTGGCCGGTTGATGTATGGACAGGAAGATGT TATGACCGGTTTGGCCGGTTCATGTATGGACAGGAAGATGT Direct Loss 0.945324010862418 0 NA NA prediction 0.890648021724836 Functional Loss - MRPL45 ENSG00000174100 CDS Human other chr17:36478041 chr17:36478041 nonsynonymous SNV 0.989 3 21 hm7G_associated_SNPs_4194 0 0 1 0 1 MRPL45 chr17:36478009 3'AG 36478009 Downstream 33bp 4085 chr14 68191250 68191250 1 + G A SKCM 68191250 + 68191230 68191270 41 CTTCCTGGCAAGGTAGTGGTGATCACTGGCGCCAACACGGG CTTCCTGGCAAGGTAGTGGTAATCACTGGCGCCAACACGGG Direct Loss 0.945320933414543 0 NA NA prediction 0.890641866829086 Functional Loss - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191250 chr14:68191250 synonymous SNV . 0 21 hm7G_associated_SNPs_4195 0 0 0 0 2 RDH12 chr14:68191190 3'AG 68191190 Downstream 61bp 4086 chr14 68191250 68191250 1 + G A SKCM 68191250 + 68191230 68191270 41 CTTCCTGGCAAGGTAGTGGTGATCACTGGCGCCAACACGGG CTTCCTGGCAAGGTAGTGGTAATCACTGGCGCCAACACGGG Direct Loss 0.945320933414543 0 NA NA prediction 0.890641866829086 Functional Loss - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191250 chr14:68191250 synonymous SNV . 0 21 hm7G_associated_SNPs_4195 0 0 0 0 2 RDH12 chr14:68191308 5'GT 68191308 Upstream 59bp 4087 chr2 242509595 242509595 1 + G A SKCM 242509595 + 242509575 242509615 41 GTGGCCGCGGGGCTGGCCGTGGACTGTGTGAGGCAGGCCCA GTGGCCGCGGGGCTGGCCGTAGACTGTGTGAGGCAGGCCCA Direct Loss 0.94531801980749 0 NA NA prediction 0.890636039614981 Functional Loss - BOK ENSG00000176720 CDS Human protein_coding chr2:242509595 chr2:242509595 synonymous SNV . 0 21 hm7G_associated_SNPs_4196 0 0 1 0 1 BOK chr2:242509540 3'AG 242509540 Downstream 56bp 4088 chr21 36081671 36081671 1 + G T SARC 36081671 + 36081651 36081691 41 TTAGTTCATGAAAAGAACCTGCTGAAGGCCCTGAGGAAGCT TTAGTTCATGAAAAGAACCTTCTGAAGGCCCTGAGGAAGCT Direct Loss 0.945313423217939 0 NA NA prediction 0.890626846435879 Functional Loss - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36081671 chr21:36081671 synonymous SNV . 0 21 hm7G_associated_SNPs_4198 0 0 0 0 1 CLIC6 chr21:36081655 3'AG 36081655 Downstream 17bp 4089 chr1 17594354 17594354 1 + G T LUSC 17594354 + 17594334 17594374 41 CTGGAAGACATGTCTGTCATGGTCCTGCGGACGCAGGGCCC CTGGAAGACATGTCTGTCATTGTCCTGCGGACGCAGGGCCC Direct Loss 0.945311408713228 0 NA NA prediction 0.890622817426457 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17594354 chr1:17594354 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_4199 0 0 0 0 1 PADI3 chr1:17594332 3'AG 17594332 Downstream 23bp 4090 chr7 103008346 103008346 1 + G A BLCA 103008346 + 103008326 103008366 41 TTTCTTTTTGTTTGAAAGGTGCTGAGATTAGAAGCGTCTGC TTTCTTTTTGTTTGAAAGGTACTGAGATTAGAAGCGTCTGC Direct Loss 0.945309642465086 0 NA NA prediction 0.890619284930173 Functional Loss - PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103008346 chr7:103008346 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_4200 0 0 1 0 1 PSMC2 chr7:103008344 3'AG 103008344 Downstream 3bp 4091 chr16 56642952 56642952 1 + G A LGG 56642952 + 56642932 56642972 41 CAAATGCAAAGAGTGCAAATGCACCTCCTGCAAGAAAAGTA CAAATGCAAAGAGTGCAAATACACCTCCTGCAAGAAAAGTA Direct Loss 0.945297617488371 0 NA NA prediction 0.890595234976742 Functional Loss - MT2A ENSG00000125148 CDS Human protein_coding chr16:56642952 chr16:56642952 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_4201 0 0 1 0 2 MT2A chr16:56642904 3'AG 56642904 Downstream 49bp 4092 chr16 56642952 56642952 1 + G A LGG 56642952 + 56642932 56642972 41 CAAATGCAAAGAGTGCAAATGCACCTCCTGCAAGAAAAGTA CAAATGCAAAGAGTGCAAATACACCTCCTGCAAGAAAAGTA Direct Loss 0.945297617488371 0 NA NA prediction 0.890595234976742 Functional Loss - MT2A ENSG00000125148 CDS Human protein_coding chr16:56642952 chr16:56642952 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_4201 0 0 1 0 2 MT2A chr16:56642969 5'GT 56642969 Upstream 18bp 4093 chr10 12191919 12191919 1 + G A SARC 12191919 + 12191899 12191939 41 CGGGGATGTATGGGGACCCTGCAGAAATGGGTGCCGGAATC CGGGGATGTATGGGGACCCTACAGAAATGGGTGCCGGAATC Direct Loss 0.945292979422029 0 NA NA prediction 0.890585958844058 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191919 chr10:12191919 nonsynonymous SNV 0.867 1 21 hm7G_associated_SNPs_4203 0 0 1 1 1 SEC61A2 chr10:12191960 5'GT 12191960 Upstream 42bp 4094 chr5 159661853 159661853 1 + G T UCEC 159661853 + 159661833 159661873 41 GTGCAGATGGAGGGCGGGAAGCTGGTGGTGAATTTCCCCAA GTGCAGATGGAGGGCGGGAATCTGGTGGTGAATTTCCCCAA Direct Loss 0.945283086478356 0 NA NA prediction 0.890566172956711 Functional Loss - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159661853 chr5:159661853 nonsynonymous SNV 0.590 4 21 hm7G_associated_SNPs_4205 0 0 0 0 2 FABP6 chr5:159661827 3'AG 159661827 Downstream 27bp 4095 chr5 159661853 159661853 1 + G T UCEC 159661853 + 159661833 159661873 41 GTGCAGATGGAGGGCGGGAAGCTGGTGGTGAATTTCCCCAA GTGCAGATGGAGGGCGGGAATCTGGTGGTGAATTTCCCCAA Direct Loss 0.945283086478356 0 NA NA prediction 0.890566172956711 Functional Loss - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159661853 chr5:159661853 nonsynonymous SNV 0.590 4 21 hm7G_associated_SNPs_4205 0 0 0 0 2 FABP6 chr5:159661916 5'GT 159661916 Upstream 64bp 4096 chr11 67254584 67254584 1 + G T SARC 67254584 + 67254564 67254604 41 ATCATTGGCAAGAAGTTCAAGCTGCCTGTGTGGGAGACCAT ATCATTGGCAAGAAGTTCAATCTGCCTGTGTGGGAGACCAT Direct Loss 0.945278141706383 0 NA NA prediction 0.890556283412766 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67254584 chr11:67254584 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_4206 0 0 1 0 1 AIP chr11:67254656 5'GT 67254656 Upstream 73bp 4097 chr15 59752207 59752207 1 + G T LUAD 59752207 + 59752187 59752227 41 TCTGTAAGCCTCGTGGAGCAGCTGGAAGACAGGATCCTCTG TCTGTAAGCCTCGTGGAGCATCTGGAAGACAGGATCCTCTG Direct Loss 0.945277672895161 0 NA NA prediction 0.890555345790322 Functional Loss - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59752207 chr15:59752207 nonsynonymous SNV 0.665 3 21 hm7G_associated_SNPs_4207 0 0 0 0 1 FAM81A chr15:59752132 3'AG 59752132 Downstream 76bp 4098 chrX 110406200 110406200 1 + G A SKCM 110406200 + 110406180 110406220 41 CTGTGTCTGAAGAAGAAGATGAAGAGGAAGAAGAAGAAGAA CTGTGTCTGAAGAAGAAGATAAAGAGGAAGAAGAAGAAGAA Direct Loss 0.945265032295984 0 NA NA prediction 0.890530064591968 Functional Loss - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110406200 chrX:110406200 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4208 0 0 0 0 1 PAK3 chrX:110406274 5'GT 110406274 Upstream 75bp 4099 chr1 47282724 47282724 1 + G A SKCM 47282724 + 47282704 47282744 41 GTTGTGTTGCTGGCAGGGATGATCTGGGCAAAATGACTTAT GTTGTGTTGCTGGCAGGGATAATCTGGGCAAAATGACTTAT Direct Loss 0.945260363596778 0 NA NA prediction 0.890520727193556 Functional Loss - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47282724 chr1:47282724 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_4209 0 0 0 0 1 CYP4B1 chr1:47282720 3'AG 47282720 Downstream 5bp 4100 chr16 49433105 49433105 1 + G C BLCA 49433105 + 49433085 49433125 41 TTGTGCAAGGATGCAGGAATGAATGTGGATATCCACCCCCA TTGTGCAAGGATGCAGGAATCAATGTGGATATCCACCCCCA Direct Loss 0.945259119559455 0 NA NA prediction 0.890518239118909 Functional Loss - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49433105 chr16:49433105 nonsynonymous SNV 0.579 0 21 hm7G_associated_SNPs_4210 0 0 0 0 1 C16orf78 chr16:49433042 3'AG 49433042 Downstream 64bp 4101 chr1 36644541 36644541 1 + G A UCEC 36644541 + 36644521 36644561 41 GAAAGAGGAGGCCGAAGCTCGGTCGCGGGAAGAGGCGGAGC GAAAGAGGAGGCCGAAGCTCAGTCGCGGGAAGAGGCGGAGC Direct Loss 0.945258765784633 0 NA NA prediction 0.890517531569265 Functional Loss - MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36644541 chr1:36644541 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4211 0 0 1 0 2 MAP7D1 chr1:36644522 3'AG 36644522 Downstream 20bp 4102 chr1 36644541 36644541 1 + G A UCEC 36644541 + 36644521 36644561 41 GAAAGAGGAGGCCGAAGCTCGGTCGCGGGAAGAGGCGGAGC GAAAGAGGAGGCCGAAGCTCAGTCGCGGGAAGAGGCGGAGC Direct Loss 0.945258765784633 0 NA NA prediction 0.890517531569265 Functional Loss - MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36644541 chr1:36644541 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4211 0 0 1 0 2 MAP7D1 chr1:36644626 5'GT 36644626 Upstream 86bp 4103 chrX 23689717 23689717 1 + G A rs144393327 23689717 + 23689697 23689737 41 TTAAGGAGCTGAAGTTAACTGATTATCGTGGGAAATACTTG TTAAGGAGCTGAAGTTAACTAATTATCGTGGGAAATACTTG Direct Loss 0.945255236869137 0 NA NA prediction 0.890510473738274 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23689717 chrX:23689717 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4212 0 0 1 0 2 PRDX4 chrX:23689646 3'AG 23689646 Downstream 72bp 4104 chrX 23689717 23689717 1 + G A rs144393327 23689717 + 23689697 23689737 41 TTAAGGAGCTGAAGTTAACTGATTATCGTGGGAAATACTTG TTAAGGAGCTGAAGTTAACTAATTATCGTGGGAAATACTTG Direct Loss 0.945255236869137 0 NA NA prediction 0.890510473738274 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23689717 chrX:23689717 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4212 0 0 1 0 2 PRDX4 chrX:23689763 5'GT 23689763 Upstream 47bp 4105 chr6 42906384 42906384 1 + G T rs9471969 42906384 + 42906364 42906404 41 GAAGTCCAAGAAGAAGAGCAGCAGGGCCAAGGCAGCAGGCG GAAGTCCAAGAAGAAGAGCATCAGGGCCAAGGCAGCAGGCG Direct Loss 0.945247600951735 0 NA NA prediction 0.89049520190347 Functional Loss - CNPY3 ENSG00000137161 CDS Human protein_coding chr6:42906384 chr6:42906384 nonsynonymous SNV 0.990 0 21 hm7G_associated_SNPs_4213 0 0 1 0 1 CNPY3 chr6:42906306 3'AG 42906306 Downstream 79bp 4106 chrX 17771434 17771434 1 + G A LUSC 17771434 + 17771414 17771454 41 GACGTGTTGCTGAAGCACTTGGGGGTGAAGCTGGGAACGGC GACGTGTTGCTGAAGCACTTAGGGGTGAAGCTGGGAACGGC Direct Loss 0.945232928319242 0 NA NA prediction 0.890465856638484 Functional Loss - SCML1 ENSG00000047634 CDS Human protein_coding chrX:17771434 chrX:17771434 synonymous SNV . 0 21 hm7G_associated_SNPs_4215 0 0 1 0 1 SCML1 chrX:17771378 3'AG 17771378 Downstream 57bp 4107 chr8 99169894 99169894 1 + G A BLCA 99169894 + 99169874 99169914 41 CCTGGTGTGGGCCCAGTTCTGAGGATAGTCGGGGAGGCCGG CCTGGTGTGGGCCCAGTTCTAAGGATAGTCGGGGAGGCCGG Direct Loss 0.945231365867245 0 NA NA prediction 0.890462731734491 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99169894 chr8:99169894 nonsynonymous SNV 0.032 0 21 hm7G_associated_SNPs_4216 0 0 1 0 1 POP1 chr8:99169845 3'AG 99169845 Downstream 50bp 4108 chr19 37967302 37967302 1 + G A KIRC 37967302 + 37967282 37967322 41 CAAGGAAAAGCACCCTGGATGGTGAAGAGAGAGCTGACAAA CAAGGAAAAGCACCCTGGATAGTGAAGAGAGAGCTGACAAA Direct Loss 0.945231131776968 0 NA NA prediction 0.890462263553936 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37967302 chr19:37967302 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_4217 0 0 1 0 3 ZNF570 chr19:37967241 3'AG 37967241 Downstream 62bp 4109 chr19 37967302 37967302 1 + G A KIRC 37967302 + 37967282 37967322 41 CAAGGAAAAGCACCCTGGATGGTGAAGAGAGAGCTGACAAA CAAGGAAAAGCACCCTGGATAGTGAAGAGAGAGCTGACAAA Direct Loss 0.945231131776968 0 NA NA prediction 0.890462263553936 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37967302 chr19:37967302 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_4217 0 0 1 0 3 ZNF570 chr19:37967336 5'GT 37967336 Upstream 35bp 4110 chr19 37967302 37967302 1 + G A KIRC 37967302 + 37967282 37967322 41 CAAGGAAAAGCACCCTGGATGGTGAAGAGAGAGCTGACAAA CAAGGAAAAGCACCCTGGATAGTGAAGAGAGAGCTGACAAA Direct Loss 0.945231131776968 0 NA NA prediction 0.890462263553936 Functional Loss - ZNF570 ENSG00000171827 CDS Human other chr19:37967302 chr19:37967302 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_4217 0 0 1 0 3 ZNF570 chr19:37967395 5'GT 37967395 Upstream 94bp 4111 chr2 232035319 232035319 1 + G A UCEC 232035319 + 232035299 232035339 41 TCATTCTGAAGGATACCAGTGAAGACATTGAGGAGCTGGTG TCATTCTGAAGGATACCAGTAAAGACATTGAGGAGCTGGTG Direct Loss 0.945228066724048 0 NA NA prediction 0.890456133448095 Functional Loss - PSMD1 ENSG00000173692 CDS Human protein_coding chr2:232035319 chr2:232035319 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_4218 0 0 1 0 1 PSMD1 chr2:232035280 3'AG 232035280 Downstream 40bp 4112 chr3 50683628 50683628 1 + G T STAD 50683628 + 50683608 50683648 41 CAGGCCATCTCCCCGGGGATGAAGAGGAGGATTCGCCTGGG CAGGCCATCTCCCCGGGGATTAAGAGGAGGATTCGCCTGGG Direct Loss 0.945227261362861 0 NA NA prediction 0.890454522725722 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683628 chr3:50683628 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4219 0 0 1 0 2 MAPKAPK3 chr3:50683571 3'AG 50683571 Downstream 58bp 4113 chr3 50683628 50683628 1 + G T STAD 50683628 + 50683608 50683648 41 CAGGCCATCTCCCCGGGGATGAAGAGGAGGATTCGCCTGGG CAGGCCATCTCCCCGGGGATTAAGAGGAGGATTCGCCTGGG Direct Loss 0.945227261362861 0 NA NA prediction 0.890454522725722 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683628 chr3:50683628 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4219 0 0 1 0 2 MAPKAPK3 chr3:50683695 5'GT 50683695 Upstream 68bp 4114 chr1 33149975 33149975 1 - C T ESCA 33149975 - 33149955 33149995 41 CATCTCATGCAGGAACAGCTGGAGGAAATGGAAGAACGCCA CATCTCATGCAGGAACAGCTAGAGGAAATGGAAGAACGCCA Direct Loss 0.945212353257095 0 NA NA prediction 0.89042470651419 Functional Loss - SYNC ENSG00000162520 CDS Human protein_coding chr1:33149975 chr1:33149975 synonymous SNV . 0 21 hm7G_associated_SNPs_4220 0 0 0 0 1 SYNC chr1:33149983 3'AG 33149983 Downstream 9bp 4115 chr1 160165806 160165806 1 + G A HNSC 160165806 + 160165786 160165826 41 GAGATTGTCAACTTCGTGGAGGAGCACAGGAGGTGGGGACC GAGATTGTCAACTTCGTGGAAGAGCACAGGAGGTGGGGACC Direct Loss 0.945211059202774 0 NA NA prediction 0.890422118405547 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160165806 chr1:160165806 synonymous SNV . 0 21 hm7G_associated_SNPs_4221 0 0 0 0 1 CASQ1 chr1:160165817 5'GT 160165817 Upstream 12bp 4116 chr9 100773654 100773654 1 + G A UCEC 100773654 + 100773634 100773674 41 TAGAAGGGGATGAGGACGACGATGAAGTCAGTGAGGAGGTC TAGAAGGGGATGAGGACGACAATGAAGTCAGTGAGGAGGTC Direct Loss 0.945210655753196 0 NA NA prediction 0.890421311506392 Functional Loss - ANP32B ENSG00000136938 CDS Human protein_coding chr9:100773654 chr9:100773654 nonsynonymous SNV 0.217 0 21 hm7G_associated_SNPs_4222 0 0 1 0 1 ANP32B chr9:100773671 5'GT 100773671 Upstream 18bp 4117 chr7 21516774 21516774 1 + G T HNSC 21516774 + 21516754 21516794 41 CTGTAGCAGTTGGAGGAATTGCTAATGCCACGATAGGTGCT CTGTAGCAGTTGGAGGAATTTCTAATGCCACGATAGGTGCT Direct Loss 0.945185613775125 0 NA NA prediction 0.890371227550249 Functional Loss - SP4 ENSG00000105866 CDS Human protein_coding chr7:21516774 chr7:21516774 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4224 0 0 0 0 1 SP4 chr7:21516697 3'AG 21516697 Downstream 78bp 4118 chr17 9745815 9745815 1 + G T SARC 9745815 + 9745795 9745835 41 GCTTTGTTTACTTTCAGAGAGCTCAGGAAGGGCCTACAGAC GCTTTGTTTACTTTCAGAGATCTCAGGAAGGGCCTACAGAC Direct Loss 0.945180750717067 0 NA NA prediction 0.890361501434134 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9745815 chr17:9745815 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_4225 0 0 0 1 1 GLP2R chr17:9745812 3'AG 9745812 Downstream 4bp 4119 chr9 97207332 97207332 1 + G A UCEC 97207332 + 97207312 97207352 41 TACGGAGACAGCCTCGTTGTGCTGGTGGCCACAGTGGTGGC TACGGAGACAGCCTCGTTGTACTGGTGGCCACAGTGGTGGC Direct Loss 0.9451618004365 0 NA NA prediction 0.890323600872999 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97207332 chr9:97207332 synonymous SNV . 0 21 hm7G_associated_SNPs_4227 0 0 1 0 1 MFSD14B chr9:97207246 3'AG 97207246 Downstream 87bp 4120 chr16 31202724 31202724 1 + G C BLCA 31202724 + 31202704 31202744 41 TTTTTTTTTTTTGCAGGGGTGAGCACAGACAGGATCGCAGG TTTTTTTTTTTTGCAGGGGTCAGCACAGACAGGATCGCAGG Direct Loss 0.945160874616222 0 NA NA prediction 0.890321749232444 Functional Loss - FUS ENSG00000089280 CDS Human protein_coding chr16:31202724 chr16:31202724 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4228 0 0 1 0 1 FUS chr16:31202720 3'AG 31202720 Downstream 5bp 4121 chr16 81279132 81279132 1 + G A BLCA 81279132 + 81279112 81279152 41 CTCCGCAATGGGCCTGGGATGCACACAGTTGGGGAGTCCAG CTCCGCAATGGGCCTGGGATACACACAGTTGGGGAGTCCAG Direct Loss 0.945154393221288 0 NA NA prediction 0.890308786442575 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81279132 chr16:81279132 nonsynonymous SNV 0.951 2 21 hm7G_associated_SNPs_4230 0 0 0 0 2 BCO1 chr16:81279080 3'AG 81279080 Downstream 53bp 4122 chr16 81279132 81279132 1 + G A BLCA 81279132 + 81279112 81279152 41 CTCCGCAATGGGCCTGGGATGCACACAGTTGGGGAGTCCAG CTCCGCAATGGGCCTGGGATACACACAGTTGGGGAGTCCAG Direct Loss 0.945154393221288 0 NA NA prediction 0.890308786442575 Functional Loss - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81279132 chr16:81279132 nonsynonymous SNV 0.951 2 21 hm7G_associated_SNPs_4230 0 0 0 0 2 BCO1 chr16:81279208 5'GT 81279208 Upstream 77bp 4123 chr9 135464627 135464627 1 + G C COAD 135464627 + 135464607 135464647 41 GCCCCCAGGACTAAATGGAAGCGACAGACGGCCGTCGGGTT GCCCCCAGGACTAAATGGAACCGACAGACGGCCGTCGGGTT Direct Loss 0.945150261785912 0 NA NA prediction 0.890300523571824 Functional Loss - BARHL1 ENSG00000125492 CDS Human protein_coding chr9:135464627 chr9:135464627 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_4231 0 0 0 0 1 BARHL1 chr9:135464615 3'AG 135464615 Downstream 13bp 4124 chr12 75893673 75893673 1 - C A UCEC 75893673 - 75893653 75893693 41 GAAAAGGTTAAGAAAGCAAAGAATAAGAAACTGGGAGCTCT GAAAAGGTTAAGAAAGCAAATAATAAGAAACTGGGAGCTCT Direct Loss 0.945146506028465 0 NA NA prediction 0.89029301205693 Functional Loss - KRR1 ENSG00000111615 CDS Human protein_coding chr12:75893673 chr12:75893673 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_4232 0 0 1 0 1 KRR1 chr12:75893731 3'AG 75893731 Downstream 59bp 4125 chr3 159711526 159711526 1 + G T OV 159711526 + 159711506 159711546 41 ATTTATGAAGACTTGAAGATGTACCAGGTGGAGTTCAAGAC ATTTATGAAGACTTGAAGATTTACCAGGTGGAGTTCAAGAC Direct Loss 0.945145722981711 0 NA NA prediction 0.890291445963422 Functional Loss - IL12A ENSG00000168811 CDS Human protein_coding chr3:159711526 chr3:159711526 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4233 0 0 0 0 1 IL12A chr3:159711488 3'AG 159711488 Downstream 39bp 4126 chr1 9780186 9780186 1 + G T LUAD 9780186 + 9780166 9780206 41 TCAGATGAGAAGGGCGAGCTGCTGAACCCCACGGGCACTGT TCAGATGAGAAGGGCGAGCTTCTGAACCCCACGGGCACTGT Direct Loss 0.945137100414021 0 NA NA prediction 0.890274200828043 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9780186 chr1:9780186 synonymous SNV . 0 21 hm7G_associated_SNPs_4234 0 0 1 0 1 PIK3CD chr1:9780170 3'AG 9780170 Downstream 17bp 4127 chr6 42996903 42996903 1 + G C LUAD 42996903 + 42996883 42996923 41 AAGAAATTGGAGAACTTCTTGAGTCGAAAGAGGCGACGAAA AAGAAATTGGAGAACTTCTTCAGTCGAAAGAGGCGACGAAA Direct Loss 0.945128166231621 0 NA NA prediction 0.890256332463242 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42996903 chr6:42996903 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4236 0 0 1 0 1 RRP36 chr6:42996830 3'AG 42996830 Downstream 74bp 4128 chr12 6970645 6970645 1 + G A UCEC 6970645 + 6970625 6970665 41 AGGAGAAGAAGCGGCAAGCCGAAGAGGAGAAGATGGCACTG AGGAGAAGAAGCGGCAAGCCAAAGAGGAGAAGATGGCACTG Direct Loss 0.945126304241673 0 NA NA prediction 0.890252608483346 Functional Loss - USP5 ENSG00000111667 CDS Human protein_coding chr12:6970645 chr12:6970645 nonsynonymous SNV 0.945 3 21 hm7G_associated_SNPs_4237 0 0 1 0 1 USP5 chr12:6970607 3'AG 6970607 Downstream 39bp 4129 chr8 86115410 86115410 1 + G A COAD 86115410 + 86115390 86115430 41 GAAATTGAAGATCTAGAACTGAAGGAAAGAGAACTTGATCA GAAATTGAAGATCTAGAACTAAAGGAAAGAGAACTTGATCA Direct Loss 0.945123421771702 0 NA NA prediction 0.890246843543403 Functional Loss - E2F5 ENSG00000133740 CDS Human protein_coding chr8:86115410 chr8:86115410 synonymous SNV . 0 21 hm7G_associated_SNPs_4238 0 0 0 0 1 E2F5 chr8:86115329 3'AG 86115329 Downstream 82bp 4130 chr1 168044653 168044653 1 + G A BLCA 168044653 + 168044633 168044673 41 AAGGCTCTGGTCAAGAGAATGAAAATGAGGATGAGGAATAA AAGGCTCTGGTCAAGAGAATAAAAATGAGGATGAGGAATAA Direct Loss 0.945115300726854 0 NA NA prediction 0.890230601453707 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168044653 chr1:168044653 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4240 0 0 1 0 1 DCAF6 chr1:168044609 3'AG 168044609 Downstream 45bp 4131 chr4 79518518 79518518 1 + G A SARC 79518518 + 79518498 79518538 41 CCAAAAGGACATTGTGGACAGCATAAAAGGAGAATTATCTG CCAAAAGGACATTGTGGACAACATAAAAGGAGAATTATCTG Direct Loss 0.945111484892871 0 NA NA prediction 0.890222969785741 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79518518 chr4:79518518 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4242 0 0 0 0 2 ANXA3 chr4:79518473 3'AG 79518473 Downstream 46bp 4132 chr4 79518518 79518518 1 + G A SARC 79518518 + 79518498 79518538 41 CCAAAAGGACATTGTGGACAGCATAAAAGGAGAATTATCTG CCAAAAGGACATTGTGGACAACATAAAAGGAGAATTATCTG Direct Loss 0.945111484892871 0 NA NA prediction 0.890222969785741 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79518518 chr4:79518518 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4242 0 0 0 0 2 ANXA3 chr4:79518568 5'GT 79518568 Upstream 51bp 4133 chr3 13538301 13538301 1 + G T SARC 13538301 + 13538281 13538321 41 TTCCTCCCCAACTTCCTTGTGCAGAGGAAGGTGCTGAGGCC TTCCTCCCCAACTTCCTTGTTCAGAGGAAGGTGCTGAGGCC Direct Loss 0.945106634010572 0 NA NA prediction 0.890213268021145 Functional Loss - HDAC11 ENSG00000163517 CDS Human protein_coding chr3:13538301 chr3:13538301 synonymous SNV . 0 21 hm7G_associated_SNPs_4243 0 0 1 0 2 HDAC11 chr3:13538236 3'AG 13538236 Downstream 66bp 4134 chr3 13538301 13538301 1 + G T SARC 13538301 + 13538281 13538321 41 TTCCTCCCCAACTTCCTTGTGCAGAGGAAGGTGCTGAGGCC TTCCTCCCCAACTTCCTTGTTCAGAGGAAGGTGCTGAGGCC Direct Loss 0.945106634010572 0 NA NA prediction 0.890213268021145 Functional Loss - HDAC11 ENSG00000163517 CDS Human protein_coding chr3:13538301 chr3:13538301 synonymous SNV . 0 21 hm7G_associated_SNPs_4243 0 0 1 0 2 HDAC11 chr3:13538352 5'GT 13538352 Upstream 52bp 4135 chr19 9489730 9489730 1 + G A rs150348399 9489730 + 9489710 9489750 41 AAAAATCTATACAAAGATGTGATGCTGGAGAACTTTAGGAA AAAAATCTATACAAAGATGTAATGCTGGAGAACTTTAGGAA Direct Loss 0.945099359870279 0 NA NA prediction 0.890198719740558 Functional Loss - ZNF177;ZNF559-ZNF177 ENSG00000188629;ENSG00000270011 CDS Human other chr19:9489730 chr19:9489730 synonymous SNV . 0 21 hm7G_associated_SNPs_4244 0 0 1 0 2 ZNF177;ZNF559-ZNF177 chr19:9489638 3'AG 9489638 Downstream 93bp 4136 chr19 9489730 9489730 1 + G A rs150348399 9489730 + 9489710 9489750 41 AAAAATCTATACAAAGATGTGATGCTGGAGAACTTTAGGAA AAAAATCTATACAAAGATGTAATGCTGGAGAACTTTAGGAA Direct Loss 0.945099359870279 0 NA NA prediction 0.890198719740558 Functional Loss - ZNF177;ZNF559-ZNF177 ENSG00000188629;ENSG00000270011 CDS Human other chr19:9489730 chr19:9489730 synonymous SNV . 0 21 hm7G_associated_SNPs_4244 0 0 1 0 2 ZNF177;ZNF559-ZNF177 chr19:9489764 5'GT 9489764 Upstream 35bp 4137 chr8 86357394 86357394 1 + G A LUAD 86357394 + 86357374 86357414 41 TTTTCTTACAGATAGGACATGAGAATGGCGAGTTCCAGATT TTTTCTTACAGATAGGACATAAGAATGGCGAGTTCCAGATT Direct Loss 0.945090162358244 0 NA NA prediction 0.890180324716487 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86357394 chr8:86357394 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4245 0 0 0 0 2 CA3 chr8:86357385 3'AG 86357385 Downstream 10bp 4138 chr8 86357394 86357394 1 + G A LUAD 86357394 + 86357374 86357414 41 TTTTCTTACAGATAGGACATGAGAATGGCGAGTTCCAGATT TTTTCTTACAGATAGGACATAAGAATGGCGAGTTCCAGATT Direct Loss 0.945090162358244 0 NA NA prediction 0.890180324716487 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86357394 chr8:86357394 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4245 0 0 0 0 2 CA3 chr8:86357447 5'GT 86357447 Upstream 54bp 4139 chr5 447731 447731 1 + G T GBM 447731 + 447711 447751 41 AATGACGTCAAAGACATCCAGCAGTCGCTGGCAGACGTCAG AATGACGTCAAAGACATCCATCAGTCGCTGGCAGACGTCAG Direct Loss 0.945082680419143 0 NA NA prediction 0.890165360838285 Functional Loss - EXOC3 ENSG00000180104 CDS Human protein_coding chr5:447731 chr5:447731 nonsynonymous SNV 0.640 2 21 hm7G_associated_SNPs_4246 0 0 1 0 1 EXOC3 chr5:447648 3'AG 447648 Downstream 84bp 4140 chr12 5541508 5541508 1 + G A COAD 5541508 + 5541488 5541528 41 GCCATGGTTACTTTTGCCACGGTAAGGGGAGGCGGCGGGCA GCCATGGTTACTTTTGCCACAGTAAGGGGAGGCGGCGGGCA Direct Loss 0.945081831147265 0 NA NA prediction 0.890163662294531 Functional Loss - NTF3 ENSG00000185652 CDS Human protein_coding chr12:5541508 chr12:5541508 synonymous SNV . 0 21 hm7G_associated_SNPs_4247 0 0 0 0 1 NTF3 chr12:5541508 5'GT 5541508 Upstream 1bp 4141 chr19 36364550 36364550 1 + G A SKCM 36364550 + 36364530 36364570 41 TCCCTATGCAGGTGATGCGTGAATGGGCCATGGCAGACAAC TCCCTATGCAGGTGATGCGTAAATGGGCCATGGCAGACAAC Direct Loss 0.945075921390315 0 NA NA prediction 0.890151842780629 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36364550 chr19:36364550 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4248 0 0 0 0 2 APLP1 chr19:36364541 3'AG 36364541 Downstream 10bp 4142 chr19 36364550 36364550 1 + G A SKCM 36364550 + 36364530 36364570 41 TCCCTATGCAGGTGATGCGTGAATGGGCCATGGCAGACAAC TCCCTATGCAGGTGATGCGTAAATGGGCCATGGCAGACAAC Direct Loss 0.945075921390315 0 NA NA prediction 0.890151842780629 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36364550 chr19:36364550 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4248 0 0 0 0 2 APLP1 chr19:36364615 5'GT 36364615 Upstream 66bp 4143 chrX 79281194 79281194 1 + G T HNSC 79281194 + 79281174 79281214 41 TGTTCACCCGGACTCACCCTGCTCGGGAGAGACCTGGATGC TGTTCACCCGGACTCACCCTTCTCGGGAGAGACCTGGATGC Direct Loss 0.945075092310278 0 NA NA prediction 0.890150184620557 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79281194 chrX:79281194 nonsynonymous SNV 0.821 4 21 hm7G_associated_SNPs_4249 0 0 0 0 2 TBX22 chrX:79281102 3'AG 79281102 Downstream 93bp 4144 chrX 79281194 79281194 1 + G T HNSC 79281194 + 79281174 79281214 41 TGTTCACCCGGACTCACCCTGCTCGGGAGAGACCTGGATGC TGTTCACCCGGACTCACCCTTCTCGGGAGAGACCTGGATGC Direct Loss 0.945075092310278 0 NA NA prediction 0.890150184620557 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79281194 chrX:79281194 nonsynonymous SNV 0.821 4 21 hm7G_associated_SNPs_4249 0 0 0 0 2 TBX22 chrX:79281276 5'GT 79281276 Upstream 83bp 4145 chr11 73101965 73101965 1 + G T HNSC 73101965 + 73101945 73101985 41 TCTGTGGAGACTGCTGGCCTGGGTAAGCCAAAGGGAGTGCG TCTGTGGAGACTGCTGGCCTTGGTAAGCCAAAGGGAGTGCG Direct Loss 0.945064615807285 0 NA NA prediction 0.89012923161457 Functional Loss - RELT ENSG00000054967 CDS Human protein_coding chr11:73101965 chr11:73101965 nonsynonymous SNV 0.888 5 21 hm7G_associated_SNPs_4250 0 0 1 0 1 RELT chr11:73101966 5'GT 73101966 Upstream 2bp 4146 chr13 113887572 113887572 1 + G A HNSC 113887572 + 113887552 113887592 41 ACCATTGATGGAATCCTACTGCTGATCGAGCGCGAGAGGAG ACCATTGATGGAATCCTACTACTGATCGAGCGCGAGAGGAG Direct Loss 0.945056115285852 0 NA NA prediction 0.890112230571704 Functional Loss - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113887572 chr13:113887572 synonymous SNV . 0 21 hm7G_associated_SNPs_4251 0 0 1 0 2 CUL4A chr13:113887491 3'AG 113887491 Downstream 82bp 4147 chr13 113887572 113887572 1 + G A HNSC 113887572 + 113887552 113887592 41 ACCATTGATGGAATCCTACTGCTGATCGAGCGCGAGAGGAG ACCATTGATGGAATCCTACTACTGATCGAGCGCGAGAGGAG Direct Loss 0.945056115285852 0 NA NA prediction 0.890112230571704 Functional Loss - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113887572 chr13:113887572 synonymous SNV . 0 21 hm7G_associated_SNPs_4251 0 0 1 0 2 CUL4A chr13:113887653 5'GT 113887653 Upstream 82bp 4148 chr1 172633494 172633494 1 + G A SKCM 172633494 + 172633474 172633514 41 GCCACCCCAGTCCACCCCCTGAAAAAAAGGAGCTGAGGAAA GCCACCCCAGTCCACCCCCTAAAAAAAAGGAGCTGAGGAAA Direct Loss 0.945052637594904 0 NA NA prediction 0.890105275189807 Functional Loss - FASLG ENSG00000117560 CDS Human protein_coding chr1:172633494 chr1:172633494 nonsynonymous SNV 0.948 0 21 hm7G_associated_SNPs_4252 0 0 0 0 2 FASLG chr1:172633474 3'AG 172633474 Downstream 21bp 4149 chr1 172633494 172633494 1 + G A SKCM 172633494 + 172633474 172633514 41 GCCACCCCAGTCCACCCCCTGAAAAAAAGGAGCTGAGGAAA GCCACCCCAGTCCACCCCCTAAAAAAAAGGAGCTGAGGAAA Direct Loss 0.945052637594904 0 NA NA prediction 0.890105275189807 Functional Loss - FASLG ENSG00000117560 CDS Human protein_coding chr1:172633494 chr1:172633494 nonsynonymous SNV 0.948 0 21 hm7G_associated_SNPs_4252 0 0 0 0 2 FASLG chr1:172633530 5'GT 172633530 Upstream 37bp 4150 chr19 16318955 16318955 1 + G A UCEC 16318955 + 16318935 16318975 41 ACCACCGACAGCAAGATCCTGCAGGAGTGAGTGGGCAGGGG ACCACCGACAGCAAGATCCTACAGGAGTGAGTGGGCAGGGG Direct Loss 0.945049726567213 0 NA NA prediction 0.890099453134427 Functional Loss - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16318955 chr19:16318955 synonymous SNV . 0 21 hm7G_associated_SNPs_4253 0 0 1 0 1 AP1M1 chr19:16318960 5'GT 16318960 Upstream 6bp 4151 chr20 55100028 55100028 1 + G T LUAD 55100028 + 55100008 55100048 41 ACCAGAGCACACCCAAGGCTGGCTTGGGAGCAAATGGCTCT ACCAGAGCACACCCAAGGCTTGCTTGGGAGCAAATGGCTCT Direct Loss 0.945040248907226 0 NA NA prediction 0.890080497814452 Functional Loss - FAM209A ENSG00000124103 CDS Human protein_coding chr20:55100028 chr20:55100028 nonsynonymous SNV 0.193 2 21 hm7G_associated_SNPs_4255 0 0 1 0 1 FAM209A chr20:55100113 5'GT 55100113 Upstream 86bp 4152 chr8 109462070 109462070 1 + G T OV 109462070 + 109462050 109462090 41 AGAAATGAGAGATAAAATGAGAAAATGGAGAGAAGAAAACT AGAAATGAGAGATAAAATGATAAAATGGAGAGAAGAAAACT Direct Loss 0.945035614978588 0 NA NA prediction 0.890071229957176 Functional Loss - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109462070 chr8:109462070 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4257 0 0 1 0 2 EMC2 chr8:109462052 3'AG 109462052 Downstream 19bp 4153 chr8 109462070 109462070 1 + G T OV 109462070 + 109462050 109462090 41 AGAAATGAGAGATAAAATGAGAAAATGGAGAGAAGAAAACT AGAAATGAGAGATAAAATGATAAAATGGAGAGAAGAAAACT Direct Loss 0.945035614978588 0 NA NA prediction 0.890071229957176 Functional Loss - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109462070 chr8:109462070 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4257 0 0 1 0 2 EMC2 chr8:109462165 5'GT 109462165 Upstream 96bp 4154 chr2 202340424 202340424 1 + G A STAD 202340424 + 202340404 202340444 41 AACATTCTCTTTGGAGCCGTGAGAGGGTTGAACTATCTGCA AACATTCTCTTTGGAGCCGTAAGAGGGTTGAACTATCTGCA Direct Loss 0.945035552114051 0 NA NA prediction 0.890071104228102 Functional Loss - STRADB ENSG00000082146 CDS Human protein_coding chr2:202340424 chr2:202340424 synonymous SNV . 0 21 hm7G_associated_SNPs_4258 0 0 1 0 2 STRADB chr2:202340342 3'AG 202340342 Downstream 83bp 4155 chr2 202340424 202340424 1 + G A STAD 202340424 + 202340404 202340444 41 AACATTCTCTTTGGAGCCGTGAGAGGGTTGAACTATCTGCA AACATTCTCTTTGGAGCCGTAAGAGGGTTGAACTATCTGCA Direct Loss 0.945035552114051 0 NA NA prediction 0.890071104228102 Functional Loss - STRADB ENSG00000082146 CDS Human protein_coding chr2:202340424 chr2:202340424 synonymous SNV . 0 21 hm7G_associated_SNPs_4258 0 0 1 0 2 STRADB chr2:202340465 5'GT 202340465 Upstream 42bp 4156 chr2 27322109 27322109 1 + G A STAD 27322109 + 27322089 27322129 41 AGCACTTGGGGTTCCAGTCAGCAGAGGAAGCCTTGAGGGGC AGCACTTGGGGTTCCAGTCAACAGAGGAAGCCTTGAGGGGC Direct Loss 0.945033240685604 0 NA NA prediction 0.890066481371207 Functional Loss - KHK ENSG00000138030 CDS Human protein_coding chr2:27322109 chr2:27322109 nonsynonymous SNV 0.343 3 21 hm7G_associated_SNPs_4259 0 0 1 0 1 KHK chr2:27322064 3'AG 27322064 Downstream 46bp 4157 chr19 54401792 54401792 1 + G C HNSC 54401792 + 54401772 54401812 41 GACGATGTGGACTGCACGCTGGTGGAGAAACGTGTGCTGGC GACGATGTGGACTGCACGCTCGTGGAGAAACGTGTGCTGGC Direct Loss 0.945015378734603 0 NA NA prediction 0.890030757469205 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401792 chr19:54401792 synonymous SNV . 0 21 hm7G_associated_SNPs_4261 0 0 0 0 1 PRKCG chr19:54401694 3'AG 54401694 Downstream 99bp 4158 chr3 38047317 38047317 1 + G A SKCM 38047317 + 38047297 38047337 41 TGGGGAAGCTGCAAGTGAGTGGAAGGAGGCGGTGGCCTGGG TGGGGAAGCTGCAAGTGAGTAGAAGGAGGCGGTGGCCTGGG Direct Loss 0.945008611500199 0 NA NA prediction 0.890017223000398 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38047317 chr3:38047317 stopgain 0.039 0 21 hm7G_associated_SNPs_4264 0 0 1 0 1 VILL chr3:38047283 3'AG 38047283 Downstream 35bp 4159 chr13 43659911 43659911 1 + G A STAD 43659911 + 43659891 43659931 41 TTTCTTTTTACAGCCCATCTGCTGGCAAGGCTAAGATTAGA TTTCTTTTTACAGCCCATCTACTGGCAAGGCTAAGATTAGA Direct Loss 0.944996047179673 0 NA NA prediction 0.889992094359347 Functional Loss - DNAJC15 ENSG00000120675 CDS Human protein_coding chr13:43659911 chr13:43659911 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4266 0 0 1 0 2 DNAJC15 chr13:43659904 3'AG 43659904 Downstream 8bp 4160 chr13 43659911 43659911 1 + G A STAD 43659911 + 43659891 43659931 41 TTTCTTTTTACAGCCCATCTGCTGGCAAGGCTAAGATTAGA TTTCTTTTTACAGCCCATCTACTGGCAAGGCTAAGATTAGA Direct Loss 0.944996047179673 0 NA NA prediction 0.889992094359347 Functional Loss - DNAJC15 ENSG00000120675 CDS Human protein_coding chr13:43659911 chr13:43659911 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4266 0 0 1 0 2 DNAJC15 chr13:43659974 5'GT 43659974 Upstream 64bp 4161 chr10 115338435 115338435 1 + G T UCEC 115338435 + 115338415 115338455 41 TACTCTTACCGAGGGAAAATGAATAGGACAGTCAACCAGCA TACTCTTACCGAGGGAAAATTAATAGGACAGTCAACCAGCA Direct Loss 0.944982264602336 0 NA NA prediction 0.889964529204672 Functional Loss - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115338435 chr10:115338435 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_4267 0 0 0 0 1 HABP2 chr10:115338386 3'AG 115338386 Downstream 50bp 4162 chr19 47111597 47111597 1 + G C LUSC 47111597 + 47111577 47111617 41 TCAATGAGGTGGATGCAGATGGTGAGCCCCACAGAGCGCGT TCAATGAGGTGGATGCAGATCGTGAGCCCCACAGAGCGCGT Direct Loss 0.944966655392585 0 NA NA prediction 0.88993331078517 Functional Loss - CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111597 chr19:47111597 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_4268 0 0 1 0 1 CALM3 chr19:47111597 5'GT 47111597 Upstream 1bp 4163 chr3 20187822 20187822 1 + G T DLBC 20187822 + 20187802 20187842 41 TTACAGATAATTAAAAAACTGATTGAAAGAAAACAGGCACA TTACAGATAATTAAAAAACTTATTGAAAGAAAACAGGCACA Direct Loss 0.944961029478498 0 NA NA prediction 0.889922058956996 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20187822 chr3:20187822 synonymous SNV . 0 21 hm7G_associated_SNPs_4269 0 0 0 0 1 KAT2B chr3:20187808 3'AG 20187808 Downstream 15bp 4164 chr8 97621683 97621683 1 + G C LUSC 97621683 + 97621663 97621703 41 CTGCTGTTGGTGTATCGCATGAGAAAGAAGGATGAAGGAAG CTGCTGTTGGTGTATCGCATCAGAAAGAAGGATGAAGGAAG Direct Loss 0.9449502248723 0 NA NA prediction 0.889900449744599 Functional Loss - SDC2 ENSG00000169439 CDS Human protein_coding chr8:97621683 chr8:97621683 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_4270 0 0 1 0 1 SDC2 chr8:97621613 3'AG 97621613 Downstream 71bp 4165 chr7 128452791 128452791 1 + G A UCEC 128452791 + 128452771 128452811 41 GAAATGGTTGTGAAAGTGCTGATCAAGCTGCAGGCGGTGCA GAAATGGTTGTGAAAGTGCTAATCAAGCTGCAGGCGGTGCA Direct Loss 0.944932478509299 0 NA NA prediction 0.889864957018597 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128452791 chr7:128452791 synonymous SNV . 0 21 hm7G_associated_SNPs_4276 0 0 0 0 1 CCDC136 chr7:128452762 3'AG 128452762 Downstream 30bp 4166 chr13 48651426 48651426 1 + G A SKCM 48651426 + 48651406 48651446 41 ACATGTCATTTGACTGCCATGGATACTGTGGAGCAAGGACA ACATGTCATTTGACTGCCATAGATACTGTGGAGCAAGGACA Direct Loss 0.944919585862084 0 NA NA prediction 0.889839171724168 Functional Loss - MED4 ENSG00000136146 CDS Human antisense chr13:48651426 chr13:48651426 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4277 0 0 0 0 1 MED4-AS1 chr13:48651487 5'GT 48651487 Upstream 62bp 4167 chr6 138726347 138726347 1 + G A ACC 138726347 + 138726327 138726367 41 AGCACGTCCGTGGAGTCTATGGACTGGGATTCAGCCATCCA AGCACGTCCGTGGAGTCTATAGACTGGGATTCAGCCATCCA Direct Loss 0.944914527133455 0 NA NA prediction 0.88982905426691 Functional Loss - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138726347 chr6:138726347 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4278 0 0 1 0 2 HEBP2 chr6:138726282 3'AG 138726282 Downstream 66bp 4168 chr6 138726347 138726347 1 + G A ACC 138726347 + 138726327 138726367 41 AGCACGTCCGTGGAGTCTATGGACTGGGATTCAGCCATCCA AGCACGTCCGTGGAGTCTATAGACTGGGATTCAGCCATCCA Direct Loss 0.944914527133455 0 NA NA prediction 0.88982905426691 Functional Loss - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138726347 chr6:138726347 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4278 0 0 1 0 2 HEBP2 chr6:138726417 5'GT 138726417 Upstream 71bp 4169 chr7 65552363 65552363 1 + G T LUAD 65552363 + 65552343 65552383 41 CTGGGTGTGGACCGAGAGCTGCTCCGAGCAGGTGAGACGTC CTGGGTGTGGACCGAGAGCTTCTCCGAGCAGGTGAGACGTC Direct Loss 0.944905633900051 0 NA NA prediction 0.889811267800102 Functional Loss - ASL ENSG00000126522 CDS Human protein_coding chr7:65552363 chr7:65552363 synonymous SNV . 0 21 hm7G_associated_SNPs_4279 0 0 1 0 2 ASL chr7:65552321 3'AG 65552321 Downstream 43bp 4170 chr7 65552363 65552363 1 + G T LUAD 65552363 + 65552343 65552383 41 CTGGGTGTGGACCGAGAGCTGCTCCGAGCAGGTGAGACGTC CTGGGTGTGGACCGAGAGCTTCTCCGAGCAGGTGAGACGTC Direct Loss 0.944905633900051 0 NA NA prediction 0.889811267800102 Functional Loss - ASL ENSG00000126522 CDS Human protein_coding chr7:65552363 chr7:65552363 synonymous SNV . 0 21 hm7G_associated_SNPs_4279 0 0 1 0 2 ASL chr7:65552373 5'GT 65552373 Upstream 11bp 4171 chr12 7947128 7947128 1 + G A SKCM 7947128 + 7947108 7947148 41 ACTGGCCGAAGAATAGCAATGGTGTGACGCAGGTAACAGGA ACTGGCCGAAGAATAGCAATAGTGTGACGCAGGTAACAGGA Direct Loss 0.944881221081338 0 NA NA prediction 0.889762442162676 Functional Loss - NANOG ENSG00000111704 CDS Human protein_coding chr12:7947128 chr12:7947128 nonsynonymous SNV 0.015 1 21 hm7G_associated_SNPs_4280 0 0 0 0 2 NANOG chr12:7947053 3'AG 7947053 Downstream 76bp 4172 chr12 7947128 7947128 1 + G A SKCM 7947128 + 7947108 7947148 41 ACTGGCCGAAGAATAGCAATGGTGTGACGCAGGTAACAGGA ACTGGCCGAAGAATAGCAATAGTGTGACGCAGGTAACAGGA Direct Loss 0.944881221081338 0 NA NA prediction 0.889762442162676 Functional Loss - NANOG ENSG00000111704 CDS Human protein_coding chr12:7947128 chr12:7947128 nonsynonymous SNV 0.015 1 21 hm7G_associated_SNPs_4280 0 0 0 0 2 NANOG chr12:7947139 5'GT 7947139 Upstream 12bp 4173 chr15 45408806 45408806 1 + G A PAAD 45408806 + 45408786 45408826 41 ACGCCGCGGAGTACGCGAACGCACTGGAGAAGGGGCTGCCG ACGCCGCGGAGTACGCGAACACACTGGAGAAGGGGCTGCCG Direct Loss 0.944879517442395 0 NA NA prediction 0.88975903488479 Functional Loss - DUOXA2 ENSG00000140274 CDS Human protein_coding chr15:45408806 chr15:45408806 nonsynonymous SNV 0.111 4 21 hm7G_associated_SNPs_4281 0 0 0 0 1 DUOXA2 chr15:45408714 3'AG 45408714 Downstream 93bp 4174 chr17 4923973 4923973 1 + G A LUAD 4923973 + 4923953 4923993 41 AAAGCTGGAAATGGAGAAGAGGTGCGAGGGGGTTACCCACG AAAGCTGGAAATGGAGAAGAAGTGCGAGGGGGTTACCCACG Direct Loss 0.944863720900161 0 NA NA prediction 0.889727441800321 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923973 chr17:4923973 nonsynonymous SNV 0.939 1 21 hm7G_associated_SNPs_4282 0 0 1 0 1 KIF1C chr17:4923973 5'GT 4923973 Upstream 1bp 4175 chr8 41399519 41399519 1 + G C UCEC 41399519 + 41399499 41399539 41 CTCTTTTTCAGGGACTACGTGATTGACCTGGAGAAGGGCTC CTCTTTTTCAGGGACTACGTCATTGACCTGGAGAAGGGCTC Direct Loss 0.944859911250338 0 NA NA prediction 0.889719822500675 Functional Loss - GINS4 ENSG00000147536 CDS Human protein_coding chr8:41399519 chr8:41399519 synonymous SNV . 0 21 hm7G_associated_SNPs_4283 0 0 1 0 1 GINS4 chr8:41399510 3'AG 41399510 Downstream 10bp 4176 chr19 40486011 40486011 1 + G A LIHC 40486011 + 40485991 40486031 41 CAGAGGATCCTGCTGGAGCTGCTGAATCAGATGGATGGATT CAGAGGATCCTGCTGGAGCTACTGAATCAGATGGATGGATT Direct Loss 0.944857970080408 0 NA NA prediction 0.889715940160817 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40486011 chr19:40486011 synonymous SNV . 0 21 hm7G_associated_SNPs_4284 0 0 1 0 2 PSMC4 chr19:40485977 3'AG 40485977 Downstream 35bp 4177 chr19 40486011 40486011 1 + G A LIHC 40486011 + 40485991 40486031 41 CAGAGGATCCTGCTGGAGCTGCTGAATCAGATGGATGGATT CAGAGGATCCTGCTGGAGCTACTGAATCAGATGGATGGATT Direct Loss 0.944857970080408 0 NA NA prediction 0.889715940160817 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40486011 chr19:40486011 synonymous SNV . 0 21 hm7G_associated_SNPs_4284 0 0 1 0 2 PSMC4 chr19:40486053 5'GT 40486053 Upstream 43bp 4178 chr1 156841494 156841494 1 + G A GBM 156841494 + 156841474 156841514 41 CAGGAAGAACGTGACGTGCTGGGCAGAGAACGATGTGGGCC CAGGAAGAACGTGACGTGCTAGGCAGAGAACGATGTGGGCC Direct Loss 0.944844315042054 0 NA NA prediction 0.889688630084109 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841494 chr1:156841494 stopgain 0.998 0 21 hm7G_associated_SNPs_4287 0 0 0 0 2 NTRK1 chr1:156841415 3'AG 156841415 Downstream 80bp 4179 chr1 156841494 156841494 1 + G A GBM 156841494 + 156841474 156841514 41 CAGGAAGAACGTGACGTGCTGGGCAGAGAACGATGTGGGCC CAGGAAGAACGTGACGTGCTAGGCAGAGAACGATGTGGGCC Direct Loss 0.944844315042054 0 NA NA prediction 0.889688630084109 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841494 chr1:156841494 stopgain 0.998 0 21 hm7G_associated_SNPs_4287 0 0 0 0 2 NTRK1 chr1:156841547 5'GT 156841547 Upstream 54bp 4180 chr20 56728619 56728619 1 + G T ESCA 56728619 + 56728599 56728639 41 GGAAATACCGTCTGAAGGCTGAATCGGAAGCACGGCAGAAC GGAAATACCGTCTGAAGGCTTAATCGGAAGCACGGCAGAAC Direct Loss 0.944834857103687 0 NA NA prediction 0.889669714207374 Functional Loss - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56728619 chr20:56728619 stopgain 0.904 1 21 hm7G_associated_SNPs_4288 0 0 0 0 2 C20orf85 chr20:56728600 3'AG 56728600 Downstream 20bp 4181 chr20 56728619 56728619 1 + G T ESCA 56728619 + 56728599 56728639 41 GGAAATACCGTCTGAAGGCTGAATCGGAAGCACGGCAGAAC GGAAATACCGTCTGAAGGCTTAATCGGAAGCACGGCAGAAC Direct Loss 0.944834857103687 0 NA NA prediction 0.889669714207374 Functional Loss - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56728619 chr20:56728619 stopgain 0.904 1 21 hm7G_associated_SNPs_4288 0 0 0 0 2 C20orf85 chr20:56728681 5'GT 56728681 Upstream 63bp 4182 chr12 131360460 131360460 1 + G A CESC 131360460 + 131360440 131360480 41 CTGCTCTCCCGGATGAGGATGATGACCTGTGAGAATGAAGC CTGCTCTCCCGGATGAGGATAATGACCTGTGAGAATGAAGC Direct Loss 0.944806215849464 0 NA NA prediction 0.889612431698928 Functional Loss - RAN ENSG00000132341 CDS Human protein_coding chr12:131360460 chr12:131360460 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4290 0 0 1 0 1 RAN chr12:131360427 3'AG 131360427 Downstream 34bp 4183 chrX 71416705 71416705 1 + G C CESC 71416705 + 71416685 71416725 41 AAAGTTAAAGTCTGGGATGAGATTCAATGAAGTGGCCGCAC AAAGTTAAAGTCTGGGATGACATTCAATGAAGTGGCCGCAC Direct Loss 0.944793284134755 0 NA NA prediction 0.889586568269511 Functional Loss - PIN4 ENSG00000102309 CDS Human protein_coding chrX:71416705 chrX:71416705 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4291 0 0 1 0 2 PIN4 chrX:71416635 3'AG 71416635 Downstream 71bp 4184 chrX 71416705 71416705 1 + G C CESC 71416705 + 71416685 71416725 41 AAAGTTAAAGTCTGGGATGAGATTCAATGAAGTGGCCGCAC AAAGTTAAAGTCTGGGATGACATTCAATGAAGTGGCCGCAC Direct Loss 0.944793284134755 0 NA NA prediction 0.889586568269511 Functional Loss - PIN4 ENSG00000102309 CDS Human protein_coding chrX:71416705 chrX:71416705 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4291 0 0 1 0 2 PIN4 chrX:71416754 5'GT 71416754 Upstream 50bp 4185 chr11 117060951 117060951 1 + G A PRAD 117060951 + 117060931 117060971 41 CTTTTCCTGCTCATCATCCTGCAACGGGAGATCAACCACAA CTTTTCCTGCTCATCATCCTACAACGGGAGATCAACCACAA Direct Loss 0.944792145188501 0 NA NA prediction 0.889584290377003 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117060951 chr11:117060951 synonymous SNV . 0 21 hm7G_associated_SNPs_4293 0 0 1 0 2 SIDT2 chr11:117060882 3'AG 117060882 Downstream 70bp 4186 chr11 117060951 117060951 1 + G A PRAD 117060951 + 117060931 117060971 41 CTTTTCCTGCTCATCATCCTGCAACGGGAGATCAACCACAA CTTTTCCTGCTCATCATCCTACAACGGGAGATCAACCACAA Direct Loss 0.944792145188501 0 NA NA prediction 0.889584290377003 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117060951 chr11:117060951 synonymous SNV . 0 21 hm7G_associated_SNPs_4293 0 0 1 0 2 SIDT2 chr11:117061005 5'GT 117061005 Upstream 55bp 4187 chr5 79368169 79368169 1 + G T STAD 79368169 + 79368149 79368189 41 AACGGGACAAGGATGGTGATGGTGTGGGGGATGCCTGTGAC AACGGGACAAGGATGGTGATTGTGTGGGGGATGCCTGTGAC Direct Loss 0.944790008592364 0 NA NA prediction 0.889580017184727 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79368169 chr5:79368169 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4294 0 0 0 0 2 THBS4 chr5:79368101 3'AG 79368101 Downstream 69bp 4188 chr5 79368169 79368169 1 + G T STAD 79368169 + 79368149 79368189 41 AACGGGACAAGGATGGTGATGGTGTGGGGGATGCCTGTGAC AACGGGACAAGGATGGTGATTGTGTGGGGGATGCCTGTGAC Direct Loss 0.944790008592364 0 NA NA prediction 0.889580017184727 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79368169 chr5:79368169 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4294 0 0 0 0 2 THBS4 chr5:79368219 5'GT 79368219 Upstream 51bp 4189 chr12 31819073 31819073 1 + G T LUSC 31819073 + 31819053 31819093 41 GAAAATCTGTATTAGATCTTGGGAGTGGATGTGGAGCTACA GAAAATCTGTATTAGATCTTTGGAGTGGATGTGGAGCTACA Direct Loss 0.944766069008454 0 NA NA prediction 0.889532138016908 Functional Loss - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31819073 chr12:31819073 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_4297 0 0 0 0 2 ETFBKMT chr12:31819021 3'AG 31819021 Downstream 53bp 4190 chr12 31819073 31819073 1 + G T LUSC 31819073 + 31819053 31819093 41 GAAAATCTGTATTAGATCTTGGGAGTGGATGTGGAGCTACA GAAAATCTGTATTAGATCTTTGGAGTGGATGTGGAGCTACA Direct Loss 0.944766069008454 0 NA NA prediction 0.889532138016908 Functional Loss - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31819073 chr12:31819073 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_4297 0 0 0 0 2 ETFBKMT chr12:31819151 5'GT 31819151 Upstream 79bp 4191 chr14 24543808 24543808 1 + G C rs2070343 24543808 + 24543788 24543828 41 GAGGACCAAAGTGATCAGCTGGTCTGGAGAACTGAGGTTGG GAGGACCAAAGTGATCAGCTCGTCTGGAGAACTGAGGTTGG Direct Loss 0.94476505052178 0 NA NA prediction 0.88953010104356 Functional Loss - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24543808 chr14:24543808 synonymous SNV . 0 21 hm7G_associated_SNPs_4298 0 0 0 0 2 CPNE6 chr14:24543740 3'AG 24543740 Downstream 69bp 4192 chr14 24543808 24543808 1 + G C rs2070343 24543808 + 24543788 24543828 41 GAGGACCAAAGTGATCAGCTGGTCTGGAGAACTGAGGTTGG GAGGACCAAAGTGATCAGCTCGTCTGGAGAACTGAGGTTGG Direct Loss 0.94476505052178 0 NA NA prediction 0.88953010104356 Functional Loss - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24543808 chr14:24543808 synonymous SNV . 0 21 hm7G_associated_SNPs_4298 0 0 0 0 2 CPNE6 chr14:24543823 5'GT 24543823 Upstream 16bp 4193 chr1 17609439 17609439 1 + G A UCEC 17609439 + 17609419 17609459 41 GAGGAGAAGGTGCGGTCCCTGCTGGAGCCGCTGGGCCTCCA GAGGAGAAGGTGCGGTCCCTACTGGAGCCGCTGGGCCTCCA Direct Loss 0.944748690961255 0 NA NA prediction 0.889497381922509 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17609439 chr1:17609439 synonymous SNV . 0 21 hm7G_associated_SNPs_4300 0 0 0 0 1 PADI3 chr1:17609341 3'AG 17609341 Downstream 99bp 4194 chr16 56601680 56601680 1 + G A BLCA 56601680 + 56601660 56601700 41 TAGGAGGAATCTGCATGTGTGGAGACAACTGCAAATGCACA TAGGAGGAATCTGCATGTGTAGAGACAACTGCAAATGCACA Direct Loss 0.944746547811425 0 NA NA prediction 0.88949309562285 Functional Loss - MT4 ENSG00000102891 CDS Human protein_coding chr16:56601680 chr16:56601680 nonsynonymous SNV 0.976 3 21 hm7G_associated_SNPs_4301 0 0 0 0 1 MT4 chr16:56601663 3'AG 56601663 Downstream 18bp 4195 chr19 55805759 55805759 1 + G A LAML 55805759 + 55805739 55805779 41 GGAGTCATCCTCTTCGCCCTGCTCGTGGTAAGGCGCCCTCA GGAGTCATCCTCTTCGCCCTACTCGTGGTAAGGCGCCCTCA Direct Loss 0.94474590110407 0 NA NA prediction 0.889491802208139 Functional Loss - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55805759 chr19:55805759 synonymous SNV . 0 21 hm7G_associated_SNPs_4302 0 0 0 0 2 BRSK1 chr19:55805697 3'AG 55805697 Downstream 63bp 4196 chr19 55805759 55805759 1 + G A LAML 55805759 + 55805739 55805779 41 GGAGTCATCCTCTTCGCCCTGCTCGTGGTAAGGCGCCCTCA GGAGTCATCCTCTTCGCCCTACTCGTGGTAAGGCGCCCTCA Direct Loss 0.94474590110407 0 NA NA prediction 0.889491802208139 Functional Loss - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55805759 chr19:55805759 synonymous SNV . 0 21 hm7G_associated_SNPs_4302 0 0 0 0 2 BRSK1 chr19:55805765 5'GT 55805765 Upstream 7bp 4197 chr11 119025267 119025267 1 + G A SKCM 119025267 + 119025247 119025287 41 CTGAAGCTGAGTGAGAAGCAGGAGGTGAAGAAGGAGCTGGT CTGAAGCTGAGTGAGAAGCAAGAGGTGAAGAAGGAGCTGGT Direct Loss 0.944735233959439 0 NA NA prediction 0.889470467918878 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025267 chr11:119025267 synonymous SNV . 0 21 hm7G_associated_SNPs_4304 0 0 0 0 2 ABCG4 chr11:119025235 3'AG 119025235 Downstream 33bp 4198 chr11 119025267 119025267 1 + G A SKCM 119025267 + 119025247 119025287 41 CTGAAGCTGAGTGAGAAGCAGGAGGTGAAGAAGGAGCTGGT CTGAAGCTGAGTGAGAAGCAAGAGGTGAAGAAGGAGCTGGT Direct Loss 0.944735233959439 0 NA NA prediction 0.889470467918878 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025267 chr11:119025267 synonymous SNV . 0 21 hm7G_associated_SNPs_4304 0 0 0 0 2 ABCG4 chr11:119025285 5'GT 119025285 Upstream 19bp 4199 chr11 118184528 118184528 1 + G T THYM 118184528 + 118184508 118184548 41 CTGGTTTACTACTGGAGCAAGAATAGAAAGGCCAAGGCCAA CTGGTTTACTACTGGAGCAATAATAGAAAGGCCAAGGCCAA Direct Loss 0.944734932001453 0 NA NA prediction 0.889469864002906 Functional Loss - CD3E ENSG00000198851 CDS Human protein_coding chr11:118184528 chr11:118184528 nonsynonymous SNV 0.976 4 21 hm7G_associated_SNPs_4305 0 0 0 0 1 CD3E chr11:118184589 5'GT 118184589 Upstream 62bp 4200 chr16 22336562 22336562 1 + G A UCEC 22336562 + 22336542 22336582 41 AATCTTGTAAAGGAAACCATGCCAAAGAAGCCGGATGCACA AATCTTGTAAAGGAAACCATACCAAAGAAGCCGGATGCACA Direct Loss 0.944707511587393 0 NA NA prediction 0.889415023174787 Functional Loss - POLR3E ENSG00000058600 CDS Human protein_coding chr16:22336562 chr16:22336562 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4307 0 0 1 0 2 POLR3E chr16:22336526 3'AG 22336526 Downstream 37bp 4201 chr16 22336562 22336562 1 + G A UCEC 22336562 + 22336542 22336582 41 AATCTTGTAAAGGAAACCATGCCAAAGAAGCCGGATGCACA AATCTTGTAAAGGAAACCATACCAAAGAAGCCGGATGCACA Direct Loss 0.944707511587393 0 NA NA prediction 0.889415023174787 Functional Loss - POLR3E ENSG00000058600 CDS Human protein_coding chr16:22336562 chr16:22336562 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4307 0 0 1 0 2 POLR3E chr16:22336587 5'GT 22336587 Upstream 26bp 4202 chr2 233428989 233428989 1 + G T KIRP 233428989 + 233428969 233429009 41 TGGAGGTTTTATAGCCACATGGTACGTCCTGGGGACCTGAC TGGAGGTTTTATAGCCACATTGTACGTCCTGGGGACCTGAC Direct Loss 0.94470657763509 0 NA NA prediction 0.889413155270181 Functional Loss - EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428989 chr2:233428989 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4309 0 0 1 0 2 EIF4E2 chr2:233428957 3'AG 233428957 Downstream 33bp 4203 chr2 233428989 233428989 1 + G T KIRP 233428989 + 233428969 233429009 41 TGGAGGTTTTATAGCCACATGGTACGTCCTGGGGACCTGAC TGGAGGTTTTATAGCCACATTGTACGTCCTGGGGACCTGAC Direct Loss 0.94470657763509 0 NA NA prediction 0.889413155270181 Functional Loss - EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428989 chr2:233428989 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4309 0 0 1 0 2 EIF4E2 chr2:233429061 5'GT 233429061 Upstream 73bp 4204 chr6 28265725 28265725 1 + G A LUAD 28265725 + 28265705 28265745 41 AAGCAAAGCAAGAAACTTCTGAAGAAATGGAACAAAGTGGA AAGCAAAGCAAGAAACTTCTAAAGAAATGGAACAAAGTGGA Direct Loss 0.944696388240824 0 NA NA prediction 0.889392776481648 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28265725 chr6:28265725 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_4311 0 0 1 0 2 PGBD1 chr6:28265672 3'AG 28265672 Downstream 54bp 4205 chr6 28265725 28265725 1 + G A LUAD 28265725 + 28265705 28265745 41 AAGCAAAGCAAGAAACTTCTGAAGAAATGGAACAAAGTGGA AAGCAAAGCAAGAAACTTCTAAAGAAATGGAACAAAGTGGA Direct Loss 0.944696388240824 0 NA NA prediction 0.889392776481648 Functional Loss - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28265725 chr6:28265725 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_4311 0 0 1 0 2 PGBD1 chr6:28265768 5'GT 28265768 Upstream 44bp 4206 chr8 118533219 118533219 1 + G A COAD 118533219 + 118533199 118533239 41 CAACACGGCGTCGCTGTGCCGCATCGGGCAGGAGACAGTGC CAACACGGCGTCGCTGTGCCACATCGGGCAGGAGACAGTGC Direct Loss 0.944685391154378 0 NA NA prediction 0.889370782308755 Functional Loss - MED30 ENSG00000164758 CDS Human protein_coding chr8:118533219 chr8:118533219 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_4312 0 0 1 0 1 MED30 chr8:118533292 5'GT 118533292 Upstream 74bp 4207 chr1 92613270 92613270 1 + G C LUSC 92613270 + 92613250 92613290 41 AAAGCATTTTGCAAGGTTTTGGTCTGAGAGAAGCTTTGCAA AAAGCATTTTGCAAGGTTTTCGTCTGAGAGAAGCTTTGCAA Direct Loss 0.944684166863913 0 NA NA prediction 0.889368333727825 Functional Loss - BTBD8 ENSG00000189195 CDS Human protein_coding chr1:92613270 chr1:92613270 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4313 0 0 0 0 1 BTBD8 chr1:92613241 3'AG 92613241 Downstream 30bp 4208 chr7 37934103 37934103 1 + G A SKCM 37934103 + 37934083 37934123 41 TAGTTAAGGAGGCTGGATTTGATCTGACACAGGTGAAGAAA TAGTTAAGGAGGCTGGATTTAATCTGACACAGGTGAAGAAA Direct Loss 0.944675995310359 0 NA NA prediction 0.889351990620718 Functional Loss - NME8 ENSG00000086288 CDS Human protein_coding chr7:37934103 chr7:37934103 nonsynonymous SNV 0.115 0 21 hm7G_associated_SNPs_4314 0 0 0 0 1 NME8 chr7:37934068 3'AG 37934068 Downstream 36bp 4209 chr12 109520488 109520488 1 + G C BLCA 109520488 + 109520468 109520508 41 ATTGAAGCCAAGGGAACGTTGAACGGGGAAAAGGTGGAACA ATTGAAGCCAAGGGAACGTTCAACGGGGAAAAGGTGGAACA Direct Loss 0.94467595038332 0 NA NA prediction 0.88935190076664 Functional Loss - USP30 ENSG00000135093 CDS Human protein_coding chr12:109520488 chr12:109520488 nonsynonymous SNV 0.143 0 21 hm7G_associated_SNPs_4315 0 0 1 0 2 USP30 chr12:109520468 3'AG 109520468 Downstream 21bp 4210 chr12 109520488 109520488 1 + G C BLCA 109520488 + 109520468 109520508 41 ATTGAAGCCAAGGGAACGTTGAACGGGGAAAAGGTGGAACA ATTGAAGCCAAGGGAACGTTCAACGGGGAAAAGGTGGAACA Direct Loss 0.94467595038332 0 NA NA prediction 0.88935190076664 Functional Loss - USP30 ENSG00000135093 CDS Human protein_coding chr12:109520488 chr12:109520488 nonsynonymous SNV 0.143 0 21 hm7G_associated_SNPs_4315 0 0 1 0 2 USP30 chr12:109520548 5'GT 109520548 Upstream 61bp 4211 chr13 48654059 48654059 1 - C A rs146587688 48654059 - 48654039 48654079 41 GAGATGAGAAGTGGGTTACTGGGTCAGATGAACAATCCTTC GAGATGAGAAGTGGGTTACTTGGTCAGATGAACAATCCTTC Direct Loss 0.944674518255944 0 NA NA prediction 0.889349036511888 Functional Loss - MED4 ENSG00000136146 CDS Human protein_coding chr13:48654059 chr13:48654059 synonymous SNV . 0 21 hm7G_associated_SNPs_4316 0 0 1 0 2 MED4 chr13:48653980 5'GT 48653980 Upstream 80bp 4212 chr13 48654059 48654059 1 - C A rs146587688 48654059 - 48654039 48654079 41 GAGATGAGAAGTGGGTTACTGGGTCAGATGAACAATCCTTC GAGATGAGAAGTGGGTTACTTGGTCAGATGAACAATCCTTC Direct Loss 0.944674518255944 0 NA NA prediction 0.889349036511888 Functional Loss - MED4 ENSG00000136146 CDS Human protein_coding chr13:48654059 chr13:48654059 synonymous SNV . 0 21 hm7G_associated_SNPs_4316 0 0 1 0 2 MED4 chr13:48654111 3'AG 48654111 Downstream 53bp 4213 chr9 104319714 104319714 1 + G A STAD 104319714 + 104319694 104319734 41 ATGTCACAGGCCAGGCCTTTGAAGACATGCAGGAGCAAAAT ATGTCACAGGCCAGGCCTTTAAAGACATGCAGGAGCAAAAT Direct Loss 0.944656738670021 0 NA NA prediction 0.889313477340042 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104319714 chr9:104319714 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4317 0 0 1 0 1 RNF20 chr9:104319666 3'AG 104319666 Downstream 49bp 4214 chr15 40475958 40475958 1 + G C BLCA 40475958 + 40475938 40475978 41 GGCAAACTCTGTTGGCACTTGAGAAAGAAGAAGAGGAGGAA GGCAAACTCTGTTGGCACTTCAGAAAGAAGAAGAGGAGGAA Direct Loss 0.944656305706063 0 NA NA prediction 0.889312611412125 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40475958 chr15:40475958 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_4318 0 0 1 0 1 BUB1B chr15:40475915 3'AG 40475915 Downstream 44bp 4215 chr16 50100171 50100171 1 + G C STAD 50100171 + 50100151 50100191 41 GACGGGCCGGCGGCGGAGCTGCTGGAAAAGGTGAGGCGAGG GACGGGCCGGCGGCGGAGCTCCTGGAAAAGGTGAGGCGAGG Direct Loss 0.944654872230477 0 NA NA prediction 0.889309744460953 Functional Loss - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50100171 chr16:50100171 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_4319 0 0 1 0 1 HEATR3 chr16:50100180 5'GT 50100180 Upstream 10bp 4216 chr14 23237257 23237257 1 + G A GBM 23237257 + 23237237 23237277 41 CTGCAGATGTAGTCCAAACTGCTGCAGAGCAGAGCTTCGCT CTGCAGATGTAGTCCAAACTACTGCAGAGCAGAGCTTCGCT Direct Loss 0.944652047997062 0 NA NA prediction 0.889304095994125 Functional Loss - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23237257 chr14:23237257 nonsynonymous SNV 0.977 1 21 hm7G_associated_SNPs_4321 0 0 1 0 1 OXA1L chr14:23237167 3'AG 23237167 Downstream 91bp 4217 chrX 77373618 77373618 1 + G A OV 77373618 + 77373598 77373638 41 AGAAGGAGCTGAACTACTTTGCAAAGGCCTTGGAGAGCCCA AGAAGGAGCTGAACTACTTTACAAAGGCCTTGGAGAGCCCA Direct Loss 0.944647741133566 0 NA NA prediction 0.889295482267133 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373618 chrX:77373618 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_4323 0 0 1 1 2 PGK1 chrX:77373548 3'AG 77373548 Downstream 71bp 4218 chrX 77373618 77373618 1 + G A OV 77373618 + 77373598 77373638 41 AGAAGGAGCTGAACTACTTTGCAAAGGCCTTGGAGAGCCCA AGAAGGAGCTGAACTACTTTACAAAGGCCTTGGAGAGCCCA Direct Loss 0.944647741133566 0 NA NA prediction 0.889295482267133 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373618 chrX:77373618 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_4323 0 0 1 1 2 PGK1 chrX:77373667 5'GT 77373667 Upstream 50bp 4219 chrY 2846100 2846100 1 + G A GBM 2846100 + 2846080 2846120 41 CAAAGAAAAAGAGAAGACCTGATTCCAGGCAGTACCAAACA CAAAGAAAAAGAGAAGACCTAATTCCAGGCAGTACCAAACA Direct Loss 0.944631082497801 0 NA NA prediction 0.889262164995601 Functional Loss - ZFY ENSG00000067646 CDS Human protein_coding chrY:2846100 chrY:2846100 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4327 0 0 0 0 1 ZFY chrY:2846121 5'GT 2846121 Upstream 22bp 4220 chr8 145537880 145537880 1 + G A BRCA 145537880 + 145537860 145537900 41 ACGACCTGCCGGTGCTGTTTGAGCTGGGAGAGGGCTCCTAC ACGACCTGCCGGTGCTGTTTAAGCTGGGAGAGGGCTCCTAC Direct Loss 0.944626362536999 0 NA NA prediction 0.889252725073998 Functional Loss - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145537880 chr8:145537880 nonsynonymous SNV 0.964 4 21 hm7G_associated_SNPs_4328 0 0 1 0 1 HSF1 chr8:145537788 3'AG 145537788 Downstream 93bp 4221 chr3 140406626 140406626 1 + G T LUAD 140406626 + 140406606 140406646 41 TAAAAAACAGCTTTAAAGCTGACAAGGAGGCAAAGCGAAAA TAAAAAACAGCTTTAAAGCTTACAAGGAGGCAAAGCGAAAA Direct Loss 0.944620828909204 0 NA NA prediction 0.889241657818409 Functional Loss - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140406626 chr3:140406626 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_4329 0 0 0 0 1 TRIM42 chr3:140406564 3'AG 140406564 Downstream 63bp 4222 chr14 97299827 97299827 1 + G A OV 97299827 + 97299807 97299847 41 AAATGCCTCGTGTAAAAGCAGCTCAAGCTGGAAGACAGAGC AAATGCCTCGTGTAAAAGCAACTCAAGCTGGAAGACAGAGC Direct Loss 0.944612307232756 0 NA NA prediction 0.889224614465513 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97299827 chr14:97299827 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_4330 0 0 0 0 1 VRK1 chr14:97299804 3'AG 97299804 Downstream 24bp 4223 chrX 47030582 47030582 1 + G T BLCA 47030582 + 47030562 47030602 41 GAGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAA GAGGAGGAGGAGGAGGAGGATGATGAGGAGGAGGAGGAGAA Direct Loss 0.944603493839899 0 NA NA prediction 0.889206987679798 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030582 chrX:47030582 nonsynonymous SNV 0.671 0 21 hm7G_associated_SNPs_4331 0 0 0 0 2 RBM10 chrX:47030509 3'AG 47030509 Downstream 74bp 4224 chrX 47030582 47030582 1 + G T BLCA 47030582 + 47030562 47030602 41 GAGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAA GAGGAGGAGGAGGAGGAGGATGATGAGGAGGAGGAGGAGAA Direct Loss 0.944603493839899 0 NA NA prediction 0.889206987679798 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030582 chrX:47030582 nonsynonymous SNV 0.671 0 21 hm7G_associated_SNPs_4331 0 0 0 0 2 RBM10 chrX:47030657 5'GT 47030657 Upstream 76bp 4225 chr8 22105503 22105503 1 + G A GBM 22105503 + 22105483 22105523 41 TCTTTGAGCAGGGCCCAGCTGAAATGATGAAGAAAAAAGGT TCTTTGAGCAGGGCCCAGCTAAAATGATGAAGAAAAAAGGT Direct Loss 0.94459786421178 0 NA NA prediction 0.88919572842356 Functional Loss - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22105503 chr8:22105503 nonsynonymous SNV 0.782 3 21 hm7G_associated_SNPs_4332 0 0 1 0 1 POLR3D chr8:22105521 5'GT 22105521 Upstream 19bp 4226 chr7 99720112 99720112 1 + G T UCEC 99720112 + 99720092 99720132 41 CTCTTTCCACAGAGAGACAAGGCTGGAAGAGGCCTTAGAGA CTCTTTCCACAGAGAGACAATGCTGGAAGAGGCCTTAGAGA Direct Loss 0.944547778193124 0 NA NA prediction 0.889095556386247 Functional Loss - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99720112 chr7:99720112 nonsynonymous SNV 0.756 4 21 hm7G_associated_SNPs_4334 0 0 1 0 2 CNPY4 chr7:99720104 3'AG 99720104 Downstream 9bp 4227 chr7 99720112 99720112 1 + G T UCEC 99720112 + 99720092 99720132 41 CTCTTTCCACAGAGAGACAAGGCTGGAAGAGGCCTTAGAGA CTCTTTCCACAGAGAGACAATGCTGGAAGAGGCCTTAGAGA Direct Loss 0.944547778193124 0 NA NA prediction 0.889095556386247 Functional Loss - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99720112 chr7:99720112 nonsynonymous SNV 0.756 4 21 hm7G_associated_SNPs_4334 0 0 1 0 2 CNPY4 chr7:99720200 5'GT 99720200 Upstream 89bp 4228 chr17 33454098 33454098 1 + G C BLCA 33454098 + 33454078 33454118 41 AGGATTCAGACTGCAGCTCTGATGAGACCAGCATCTCTGCC AGGATTCAGACTGCAGCTCTCATGAGACCAGCATCTCTGCC Direct Loss 0.944543741815212 0 NA NA prediction 0.889087483630424 Functional Loss - FNDC8 ENSG00000073598 CDS Human protein_coding chr17:33454098 chr17:33454098 nonsynonymous SNV 0.500 4 21 hm7G_associated_SNPs_4335 0 0 0 0 1 FNDC8 chr17:33454061 3'AG 33454061 Downstream 38bp 4229 chr12 22218072 22218072 1 + G T LUSC 22218072 + 22218052 22218092 41 TAGGAAATGAAGTGTCTGATGAAGAGTGCTTGAAGAGAGTG TAGGAAATGAAGTGTCTGATTAAGAGTGCTTGAAGAGAGTG Direct Loss 0.944539990931196 0 NA NA prediction 0.889079981862392 Functional Loss - CMAS ENSG00000111726 CDS Human protein_coding chr12:22218072 chr12:22218072 stopgain 1.000 1 21 hm7G_associated_SNPs_4336 0 0 1 0 1 CMAS chr12:22218055 3'AG 22218055 Downstream 18bp 4230 chr8 39550186 39550186 1 + G A UCEC 39550186 + 39550166 39550206 41 CTGTAATGCCACCACAAAATGCAAAGGGAAAGGGGTAAGTC CTGTAATGCCACCACAAAATACAAAGGGAAAGGGGTAAGTC Direct Loss 0.944536373758442 0 NA NA prediction 0.889072747516884 Functional Loss - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39550186 chr8:39550186 nonsynonymous SNV 0.982 5 21 hm7G_associated_SNPs_4338 0 0 0 2 2 ADAM18 chr8:39550119 3'AG 39550119 Downstream 68bp 4231 chr8 39550186 39550186 1 + G A UCEC 39550186 + 39550166 39550206 41 CTGTAATGCCACCACAAAATGCAAAGGGAAAGGGGTAAGTC CTGTAATGCCACCACAAAATACAAAGGGAAAGGGGTAAGTC Direct Loss 0.944536373758442 0 NA NA prediction 0.889072747516884 Functional Loss - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39550186 chr8:39550186 nonsynonymous SNV 0.982 5 21 hm7G_associated_SNPs_4338 0 0 0 2 2 ADAM18 chr8:39550199 5'GT 39550199 Upstream 14bp 4232 chr17 77710893 77710893 1 + G A OV 77710893 + 77710873 77710913 41 GGCTTTGACAACAAGGACATGGACATGAAGACCATCTTCCG GGCTTTGACAACAAGGACATAGACATGAAGACCATCTTCCG Direct Loss 0.944528246408703 0 NA NA prediction 0.889056492817406 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77710893 chr17:77710893 nonsynonymous SNV 0.469 1 21 hm7G_associated_SNPs_4340 0 0 0 0 1 ENPP7 chr17:77710840 3'AG 77710840 Downstream 54bp 4233 chr1 19923596 19923596 1 + G T STAD 19923596 + 19923576 19923616 41 TGTCTGGCGGATGCGGTCGTGAAGATAGGTAAGGGGCTTTT TGTCTGGCGGATGCGGTCGTTAAGATAGGTAAGGGGCTTTT Direct Loss 0.944528050529325 0 NA NA prediction 0.889056101058651 Functional Loss - MINOS1 ENSG00000173436;ENSG00000270136 CDS Human other chr1:19923596 chr1:19923596 synonymous SNV . 0 21 hm7G_associated_SNPs_4341 0 0 1 0 1 MINOS1 chr1:19923603 5'GT 19923603 Upstream 8bp 4234 chr17 38340572 38340572 1 + G C LUSC 38340572 + 38340552 38340592 41 CCTACCAGGGGCTGCTTCAAGAGGAAGAGGGGGCCGGCCAC CCTACCAGGGGCTGCTTCAACAGGAAGAGGGGGCCGGCCAC Direct Loss 0.944526266845282 0 NA NA prediction 0.889052533690564 Functional Loss - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38340572 chr17:38340572 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_4343 0 0 0 0 1 RAPGEFL1 chr17:38340601 5'GT 38340601 Upstream 30bp 4235 chr11 10795681 10795681 1 + G A STAD 10795681 + 10795661 10795701 41 GAACAAGAAGGTGAAGATGAGGAGGGTGGTGAGAGAAAGAA GAACAAGAAGGTGAAGATGAAGAGGGTGGTGAGAGAAAGAA Direct Loss 0.944516196021606 0 NA NA prediction 0.889032392043212 Functional Loss - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10795681 chr11:10795681 synonymous SNV . 0 21 hm7G_associated_SNPs_4345 0 0 1 0 1 CTR9 chr11:10795716 5'GT 10795716 Upstream 36bp 4236 chr9 75780047 75780047 1 + G A UCEC 75780047 + 75780027 75780067 41 GACAGGCCTTGTATGAAGCAGGAGAAAGGAGAAAGGGGACA GACAGGCCTTGTATGAAGCAAGAGAAAGGAGAAAGGGGACA Direct Loss 0.944514847777798 0 NA NA prediction 0.889029695555595 Functional Loss - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75780047 chr9:75780047 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_4346 0 0 1 0 2 ANXA1 chr9:75780032 3'AG 75780032 Downstream 16bp 4237 chr9 75780047 75780047 1 + G A UCEC 75780047 + 75780027 75780067 41 GACAGGCCTTGTATGAAGCAGGAGAAAGGAGAAAGGGGACA GACAGGCCTTGTATGAAGCAAGAGAAAGGAGAAAGGGGACA Direct Loss 0.944514847777798 0 NA NA prediction 0.889029695555595 Functional Loss - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75780047 chr9:75780047 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_4346 0 0 1 0 2 ANXA1 chr9:75780125 5'GT 75780125 Upstream 79bp 4238 chr1 84961948 84961948 1 + G A STAD 84961948 + 84961928 84961968 41 TACATATTCAGGAGTGAAAAGAAAGTGGGAATTCAGGAACT TACATATTCAGGAGTGAAAAAAAAGTGGGAATTCAGGAACT Direct Loss 0.944513625083864 0 NA NA prediction 0.889027250167728 Functional Loss - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84961948 chr1:84961948 synonymous SNV . 0 21 hm7G_associated_SNPs_4347 0 0 1 0 1 RPF1 chr1:84961927 3'AG 84961927 Downstream 22bp 4239 chr6 127911266 127911266 1 + G C BLCA 127911266 + 127911246 127911286 41 CTAAAGCAGAAGCGCATTTTGAGAGAAGTTGGGTACTGGCT CTAAAGCAGAAGCGCATTTTCAGAGAAGTTGGGTACTGGCT Direct Loss 0.944507382062033 0 NA NA prediction 0.889014764124065 Functional Loss - C6orf58 ENSG00000184530 CDS Human protein_coding chr6:127911266 chr6:127911266 nonsynonymous SNV 0.264 0 21 hm7G_associated_SNPs_4348 0 0 0 0 1 C6orf58 chr6:127911232 3'AG 127911232 Downstream 35bp 4240 chr7 98256578 98256578 1 + G T COAD 98256578 + 98256558 98256598 41 GAGGCATTCCAGGACGGAGAGAAGCTGGGCACTGGGGAGAA GAGGCATTCCAGGACGGAGATAAGCTGGGCACTGGGGAGAA Direct Loss 0.944482728437495 0 NA NA prediction 0.88896545687499 Functional Loss - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98256578 chr7:98256578 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_4349 0 0 0 0 1 NPTX2 chr7:98256656 5'GT 98256656 Upstream 79bp 4241 chrX 69421829 69421829 1 + G T LUAD 69421829 + 69421809 69421849 41 TTATTGTGGTGGGTGGAGCTGCTGAAGCTCTCTTGTGCCGA TTATTGTGGTGGGTGGAGCTTCTGAAGCTCTCTTGTGCCGA Direct Loss 0.944479743216999 0 NA NA prediction 0.888959486433999 Functional Loss - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69421829 chrX:69421829 nonsynonymous SNV 0.513 1 21 hm7G_associated_SNPs_4350 0 0 0 0 1 DGAT2L6 chrX:69421740 3'AG 69421740 Downstream 90bp 4242 chr10 124742891 124742891 1 + G A SKCM 124742891 + 124742871 124742911 41 CCTCCTGAGACCATCCACCTGATGGGAAGAAAGCTAGAAAA CCTCCTGAGACCATCCACCTAATGGGAAGAAAGCTAGAAAA Direct Loss 0.944473784677339 0 NA NA prediction 0.888947569354679 Functional Loss - PSTK ENSG00000179988 CDS Human protein_coding chr10:124742891 chr10:124742891 synonymous SNV . 0 21 hm7G_associated_SNPs_4351 0 0 0 0 1 PSTK chr10:124742986 5'GT 124742986 Upstream 96bp 4243 chr6 100056621 100056621 1 + G A UCEC 100056621 + 100056601 100056641 41 ACTGCTTGTGTTGCAGGTGCGCATGGTGAGAGGGGAGCTGG ACTGCTTGTGTTGCAGGTGCACATGGTGAGAGGGGAGCTGG Direct Loss 0.944472858747185 0 NA NA prediction 0.88894571749437 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056621 chr6:100056621 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4352 0 0 0 0 1 PRDM13 chr6:100056617 3'AG 100056617 Downstream 5bp 4244 chr10 105885303 105885303 1 + G T UCEC 105885303 + 105885283 105885323 41 CAGTTACAGTTGTTAATAAAGAAGTGGAGAAGCTGTAGCCA CAGTTACAGTTGTTAATAAATAAGTGGAGAAGCTGTAGCCA Direct Loss 0.94445460417706 0 NA NA prediction 0.888909208354119 Functional Loss - SFR1 ENSG00000156384 CDS Human protein_coding chr10:105885303 chr10:105885303 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4353 0 0 0 0 1 SFR1 chr10:105885271 3'AG 105885271 Downstream 33bp 4245 chr17 71165461 71165461 1 + G A UCEC 71165461 + 71165441 71165481 41 TAAGACTGAAAAGCAGCCATGGACATGGCGGATGAGCCACT TAAGACTGAAAAGCAGCCATAGACATGGCGGATGAGCCACT Direct Loss 0.944453509570098 0 NA NA prediction 0.888907019140196 Functional Loss - SSTR2 ENSG00000180616 CDS Human processed_transcript chr17:71165461 chr17:71165461 nonsynonymous SNV 0.060 0 21 hm7G_associated_SNPs_4354 0 0 0 0 1 SSTR2 chr17:71165367 3'AG 71165367 Downstream 95bp 4246 chr10 14944446 14944446 1 + G T SARC 14944446 + 14944426 14944466 41 ATTCTATTGACCACAGCCCAGCCAAAAAGAGGGTCAGAACA ATTCTATTGACCACAGCCCATCCAAAAAGAGGGTCAGAACA Direct Loss 0.944435751769047 0 NA NA prediction 0.888871503538094 Functional Loss - SUV39H2 ENSG00000152455 CDS Human protein_coding chr10:14944446 chr10:14944446 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_4356 0 0 1 0 1 SUV39H2 chr10:14944405 3'AG 14944405 Downstream 42bp 4247 chr19 17972276 17972276 1 + G T ESCA 17972276 + 17972256 17972296 41 CAGGGGAGATTGTCTACTGTGGGCAGGTATGGAGAGGCCGG CAGGGGAGATTGTCTACTGTTGGCAGGTATGGAGAGGCCGG Direct Loss 0.944431737306787 0 NA NA prediction 0.888863474613574 Functional Loss - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972276 chr19:17972276 nonsynonymous SNV 0.492 3 21 hm7G_associated_SNPs_4357 0 0 1 0 1 RPL18A chr19:17972281 5'GT 17972281 Upstream 6bp 4248 chr5 916028 916028 1 + G A SKCM 916028 + 916008 916048 41 TCTTTACACAGGAAGAGCGAGGGCCTCAGCGGCCGGGTCCT TCTTTACACAGGAAGAGCGAAGGCCTCAGCGGCCGGGTCCT Direct Loss 0.944428902572223 0 NA NA prediction 0.888857805144446 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:916028 chr5:916028 synonymous SNV . 0 21 hm7G_associated_SNPs_4358 0 0 1 0 2 TRIP13 chr5:916019 3'AG 916019 Downstream 10bp 4249 chr5 916028 916028 1 + G A SKCM 916028 + 916008 916048 41 TCTTTACACAGGAAGAGCGAGGGCCTCAGCGGCCGGGTCCT TCTTTACACAGGAAGAGCGAAGGCCTCAGCGGCCGGGTCCT Direct Loss 0.944428902572223 0 NA NA prediction 0.888857805144446 Functional Loss - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:916028 chr5:916028 synonymous SNV . 0 21 hm7G_associated_SNPs_4358 0 0 1 0 2 TRIP13 chr5:916088 5'GT 916088 Upstream 61bp 4250 chr11 65034085 65034085 1 + G T BLCA 65034085 + 65034065 65034105 41 GTGTTCAGTATGGACAGAATGAGGAGGGAATGGTAGGCGAG GTGTTCAGTATGGACAGAATTAGGAGGGAATGGTAGGCGAG Direct Loss 0.944384736036032 0 NA NA prediction 0.888769472072064 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65034085 chr11:65034085 stopgain 0.997 0 21 hm7G_associated_SNPs_4363 0 0 1 0 2 POLA2 chr11:65034053 3'AG 65034053 Downstream 33bp 4251 chr11 65034085 65034085 1 + G T BLCA 65034085 + 65034065 65034105 41 GTGTTCAGTATGGACAGAATGAGGAGGGAATGGTAGGCGAG GTGTTCAGTATGGACAGAATTAGGAGGGAATGGTAGGCGAG Direct Loss 0.944384736036032 0 NA NA prediction 0.888769472072064 Functional Loss - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65034085 chr11:65034085 stopgain 0.997 0 21 hm7G_associated_SNPs_4363 0 0 1 0 2 POLA2 chr11:65034177 5'GT 65034177 Upstream 93bp 4252 chr16 20430608 20430608 1 + G T THYM 20430608 + 20430588 20430628 41 AAGGACCTCAAGTACCGGCTGCAGGCGTCCAGGGCCAAGTC AAGGACCTCAAGTACCGGCTTCAGGCGTCCAGGGCCAAGTC Direct Loss 0.94437155418552 0 NA NA prediction 0.888743108371041 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20430608 chr16:20430608 synonymous SNV . 0 21 hm7G_associated_SNPs_4365 0 0 1 0 1 ACSM5 chr16:20430550 3'AG 20430550 Downstream 59bp 4253 chr14 74726354 74726354 1 + G A LUSC 74726354 + 74726334 74726374 41 GAGGAAGCGGGAGAAGTGCTGGGGCCGGAGCAGTGTCATGG GAGGAAGCGGGAGAAGTGCTAGGGCCGGAGCAGTGTCATGG Direct Loss 0.944370505163457 0 NA NA prediction 0.888741010326914 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74726354 chr14:74726354 stopgain 1.000 1 21 hm7G_associated_SNPs_4366 0 0 0 0 1 VSX2 chr14:74726305 3'AG 74726305 Downstream 50bp 4254 chr3 28361058 28361058 1 + G T UCEC 28361058 + 28361038 28361078 41 AATACCTGAAGGAAAGGGAAGAATTCAGAAAAACTGGAATT AATACCTGAAGGAAAGGGAATAATTCAGAAAAACTGGAATT Direct Loss 0.944325100606515 0 NA NA prediction 0.888650201213031 Functional Loss - CMC1 ENSG00000187118 CDS Human protein_coding chr3:28361058 chr3:28361058 stopgain 1.000 1 21 hm7G_associated_SNPs_4372 0 0 1 0 1 CMC1 chr3:28361000 3'AG 28361000 Downstream 59bp 4255 chr8 33356007 33356007 1 + G A BLCA 33356007 + 33355987 33356027 41 AGGATGGTAAATCCTCCAGTGAGGAGGAGGAAGAAAAGGCC AGGATGGTAAATCCTCCAGTAAGGAGGAGGAAGAAAAGGCC Direct Loss 0.944314205993343 0 NA NA prediction 0.888628411986685 Functional Loss - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33356007 chr8:33356007 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_4374 0 0 1 0 1 MAK16 chr8:33355950 3'AG 33355950 Downstream 58bp 4256 chr16 50136311 50136311 1 + G C BRCA 50136311 + 50136291 50136331 41 TTCAAATTAAATTATTATCTGCTCTGAAAGAATTCCAGCCG TTCAAATTAAATTATTATCTCCTCTGAAAGAATTCCAGCCG Direct Loss 0.944302914497642 0 NA NA prediction 0.888605828995284 Functional Loss - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50136311 chr16:50136311 nonsynonymous SNV 0.760 1 21 hm7G_associated_SNPs_4375 0 0 1 0 1 HEATR3 chr16:50136346 5'GT 50136346 Upstream 36bp 4257 chr4 155719995 155719995 1 + G T LUAD 155719995 + 155719975 155720015 41 GCTGACCCAGAGAAAGAGGTGGATGAGGAAACCATGCAGAG GCTGACCCAGAGAAAGAGGTTGATGAGGAAACCATGCAGAG Direct Loss 0.944302683291522 0 NA NA prediction 0.888605366583043 Functional Loss - RBM46 ENSG00000151962 CDS Human protein_coding chr4:155719995 chr4:155719995 synonymous SNV . 0 21 hm7G_associated_SNPs_4376 0 0 0 0 1 RBM46 chr4:155719934 3'AG 155719934 Downstream 62bp 4258 chr1 150258895 150258895 1 + G A STAD 150258895 + 150258875 150258915 41 TCCTCTCCTGCATCTCCTATGGAAAAGATGGACCAGACACA TCCTCTCCTGCATCTCCTATAGAAAAGATGGACCAGACACA Direct Loss 0.944294984694882 0 NA NA prediction 0.888589969389763 Functional Loss - CIART ENSG00000159208 CDS Human protein_coding chr1:150258895 chr1:150258895 nonsynonymous SNV 0.467 0 21 hm7G_associated_SNPs_4379 0 0 0 0 1 CIART chr1:150258842 3'AG 150258842 Downstream 54bp 4259 chr10 54074787 54074787 1 + G T SARC 54074787 + 54074767 54074807 41 ATCTGTCTCGCCTGCAGGAAGCGCCGAAAACGCTGCATGCG ATCTGTCTCGCCTGCAGGAATCGCCGAAAACGCTGCATGCG Direct Loss 0.944292548868065 0 NA NA prediction 0.88858509773613 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074787 chr10:54074787 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4380 0 0 1 0 1 DKK1 chr10:54074845 5'GT 54074845 Upstream 59bp 4260 chr12 56436330 56436330 1 + G T BLCA 56436330 + 56436310 56436350 41 CATTAAGAAATTCGTCATTCGAAACATAGTGGAGGCCGCAG CATTAAGAAATTCGTCATTCTAAACATAGTGGAGGCCGCAG Direct Loss 0.944284905905874 0 NA NA prediction 0.888569811811747 Functional Loss - RPS26 ENSG00000197728 CDS Human protein_coding chr12:56436330 chr12:56436330 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4383 0 0 1 0 1 RPS26 chr12:56436386 5'GT 56436386 Upstream 57bp 4261 chr12 122468617 122468617 1 + G T UCEC 122468617 + 122468597 122468637 41 CCTCCTCAGGGAGAAGAAATGGGTGACCGTTGGTGACACAT CCTCCTCAGGGAGAAGAAATTGGTGACCGTTGGTGACACAT Direct Loss 0.94428130249472 0 NA NA prediction 0.88856260498944 Functional Loss - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122468617 chr12:122468617 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_4384 0 0 1 0 2 BCL7A chr12:122468606 3'AG 122468606 Downstream 12bp 4262 chr12 122468617 122468617 1 + G T UCEC 122468617 + 122468597 122468637 41 CCTCCTCAGGGAGAAGAAATGGGTGACCGTTGGTGACACAT CCTCCTCAGGGAGAAGAAATTGGTGACCGTTGGTGACACAT Direct Loss 0.94428130249472 0 NA NA prediction 0.88856260498944 Functional Loss - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122468617 chr12:122468617 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_4384 0 0 1 0 2 BCL7A chr12:122468687 5'GT 122468687 Upstream 71bp 4263 chr2 46707598 46707598 1 + G T SARC 46707598 + 46707578 46707618 41 ACTACTTGGAAGAGATGGAAGCTTGTGAGGACGGAGGCTGC ACTACTTGGAAGAGATGGAATCTTGTGAGGACGGAGGCTGC Direct Loss 0.944266966983864 0 NA NA prediction 0.888533933967727 Functional Loss - TMEM247 ENSG00000187600 CDS Human protein_coding chr2:46707598 chr2:46707598 nonsynonymous SNV 0.025 0 21 hm7G_associated_SNPs_4387 0 0 0 0 1 TMEM247 chr2:46707544 3'AG 46707544 Downstream 55bp 4264 chr20 55043790 55043790 1 + G T COAD 55043790 + 55043770 55043810 41 GAACAATCCCCAAGAGGCATGAACTGGTGAAGGGGCCGAAG GAACAATCCCCAAGAGGCATTAACTGGTGAAGGGGCCGAAG Direct Loss 0.944266385745802 0 NA NA prediction 0.888532771491604 Functional Loss - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55043790 chr20:55043790 stopgain 1.000 1 21 hm7G_associated_SNPs_4388 0 0 1 0 1 RTFDC1 chr20:55043822 5'GT 55043822 Upstream 33bp 4265 chr2 27310214 27310214 1 + G T COAD 27310214 + 27310194 27310234 41 TACCCTAAGGAGGACTCGGAGATAAGGTAGGGGCGCCCAGG TACCCTAAGGAGGACTCGGATATAAGGTAGGGGCGCCCAGG Direct Loss 0.944264845147177 0 NA NA prediction 0.888529690294355 Functional Loss - KHK ENSG00000138030 CDS Human protein_coding chr2:27310214 chr2:27310214 nonsynonymous SNV 0.879 0 21 hm7G_associated_SNPs_4390 0 0 1 0 1 KHK chr2:27310219 5'GT 27310219 Upstream 6bp 4266 chr7 21516849 21516849 1 + G A LUAD 21516849 + 21516829 21516869 41 AGCAAGGCCAGCAGACTTCTGATCAAGAGGTACAACCTGGC AGCAAGGCCAGCAGACTTCTAATCAAGAGGTACAACCTGGC Direct Loss 0.944264259283279 0 NA NA prediction 0.888528518566557 Functional Loss - SP4 ENSG00000105866 CDS Human protein_coding chr7:21516849 chr7:21516849 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4391 0 0 1 0 1 SP4 chr7:21516925 5'GT 21516925 Upstream 77bp 4267 chr17 4923851 4923851 1 + G A rs78356534 4923851 + 4923831 4923871 41 CACCCGGAGCAGGCAAGGCTGGAACGGGAACGAGGGGTCCC CACCCGGAGCAGGCAAGGCTAGAACGGGAACGAGGGGTCCC Direct Loss 0.944255680337787 0 NA NA prediction 0.888511360675575 Functional Loss - KIF1C ENSG00000129250 CDS Human protein_coding chr17:4923851 chr17:4923851 synonymous SNV . 0 21 hm7G_associated_SNPs_4392 1 0 1 0 1 KIF1C chr17:4923787 3'AG 4923787 Downstream 65bp 4268 chr11 20409581 20409581 1 + G T LIHC 20409581 + 20409561 20409601 41 TTAGGCGGCCGGGGCGCTGTGGAGAATGAGGAGGACCTGCC TTAGGCGGCCGGGGCGCTGTTGAGAATGAGGAGGACCTGCC Direct Loss 0.944243929292199 0 NA NA prediction 0.888487858584398 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20409581 chr11:20409581 synonymous SNV . 0 21 hm7G_associated_SNPs_4394 0 0 1 0 1 PRMT3 chr11:20409565 3'AG 20409565 Downstream 17bp 4269 chr17 4498602 4498602 1 + G T LGG 4498602 + 4498582 4498622 41 GCATTGTTTGAGAAGTGGGAGCAGGAAACGGCGGCCGGCAA GCATTGTTTGAGAAGTGGGATCAGGAAACGGCGGCCGGCAA Direct Loss 0.944242559966749 0 NA NA prediction 0.888485119933497 Functional Loss - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4498602 chr17:4498602 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_4395 0 0 0 0 1 SMTNL2 chr17:4498622 5'GT 4498622 Upstream 21bp 4270 chr6 133135750 133135750 1 + G A rs539423662 133135750 + 133135730 133135770 41 TCGCGCGGAGGCGGAGGCTTGGGGTAAGTTGAGCGAGGCGG TCGCGCGGAGGCGGAGGCTTAGGGTAAGTTGAGCGAGGCGG Direct Loss 0.944242110792976 0 NA NA prediction 0.888484221585952 Functional Loss - RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135750 chr6:133135750 . . 0 21 hm7G_associated_SNPs_4396 0 0 1 0 1 RPS12 chr6:133135752 5'GT 133135752 Upstream 3bp 4271 chr11 5719631 5719631 1 + G A LGG 5719631 + 5719611 5719651 41 AATGAGGAGCAGAGAGAGCTGCAAAAGCTGGAGGAAGGTGA AATGAGGAGCAGAGAGAGCTACAAAAGCTGGAGGAAGGTGA Direct Loss 0.944225245672255 0 NA NA prediction 0.888450491344509 Functional Loss - TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5719631 chr11:5719631 synonymous SNV . 0 21 hm7G_associated_SNPs_4397 0 0 0 0 3 TRIM22 chr11:5719545 3'AG 5719545 Downstream 87bp 4272 chr11 5719631 5719631 1 + G A LGG 5719631 + 5719611 5719651 41 AATGAGGAGCAGAGAGAGCTGCAAAAGCTGGAGGAAGGTGA AATGAGGAGCAGAGAGAGCTACAAAAGCTGGAGGAAGGTGA Direct Loss 0.944225245672255 0 NA NA prediction 0.888450491344509 Functional Loss - TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5719631 chr11:5719631 synonymous SNV . 0 21 hm7G_associated_SNPs_4397 0 0 0 0 3 TRIM22 chr11:5719557 3'AG 5719557 Downstream 75bp 4273 chr11 5719631 5719631 1 + G A LGG 5719631 + 5719611 5719651 41 AATGAGGAGCAGAGAGAGCTGCAAAAGCTGGAGGAAGGTGA AATGAGGAGCAGAGAGAGCTACAAAAGCTGGAGGAAGGTGA Direct Loss 0.944225245672255 0 NA NA prediction 0.888450491344509 Functional Loss - TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5719631 chr11:5719631 synonymous SNV . 0 21 hm7G_associated_SNPs_4397 0 0 0 0 3 TRIM22 chr11:5719598 3'AG 5719598 Downstream 34bp 4274 chr11 63965428 63965428 1 + G T SARC 63965428 + 63965408 63965448 41 GAGCACCGAACCCCAGATGTGCTCAAGAAATGCCAGCAGGT GAGCACCGAACCCCAGATGTTCTCAAGAAATGCCAGCAGGT Direct Loss 0.944214301662657 0 NA NA prediction 0.888428603325314 Functional Loss - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63965428 chr11:63965428 synonymous SNV . 0 21 hm7G_associated_SNPs_4399 0 0 1 0 1 STIP1 chr11:63965446 5'GT 63965446 Upstream 19bp 4275 chr7 39606074 39606074 1 + G T rs7777434 39606074 + 39606054 39606094 41 CCTGGAGACAAAGGGGACGTGTTTGACGAAGAAGCAGACGA CCTGGAGACAAAGGGGACGTTTTTGACGAAGAAGCAGACGA Direct Loss 0.944213323803201 0 NA NA prediction 0.888426647606401 Functional Loss - YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39606074 chr7:39606074 synonymous SNV . 0 21 hm7G_associated_SNPs_4400 0 0 1 0 1 YAE1D1 chr7:39606146 5'GT 39606146 Upstream 73bp 4276 chr1 47512174 47512174 1 + G A STAD 47512174 + 47512154 47512194 41 GATGTCGTACACCACAATGTGCATCAAGGAGACGTGCCGAT GATGTCGTACACCACAATGTACATCAAGGAGACGTGCCGAT Direct Loss 0.944211017926265 0 NA NA prediction 0.88842203585253 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47512174 chr1:47512174 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4401 0 0 0 0 2 CYP4X1 chr1:47512139 3'AG 47512139 Downstream 36bp 4277 chr1 47512174 47512174 1 + G A STAD 47512174 + 47512154 47512194 41 GATGTCGTACACCACAATGTGCATCAAGGAGACGTGCCGAT GATGTCGTACACCACAATGTACATCAAGGAGACGTGCCGAT Direct Loss 0.944211017926265 0 NA NA prediction 0.88842203585253 Functional Loss - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47512174 chr1:47512174 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4401 0 0 0 0 2 CYP4X1 chr1:47512272 5'GT 47512272 Upstream 99bp 4278 chr11 64854200 64854200 1 + G A SKCM 64854200 + 64854180 64854220 41 TCCTTCCTCCAGATCGATGAGGTGGTGAGCCCAGAGCCCGA TCCTTCCTCCAGATCGATGAAGTGGTGAGCCCAGAGCCCGA Direct Loss 0.944208679309395 0 NA NA prediction 0.88841735861879 Functional Loss - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854200 chr11:64854200 synonymous SNV . 0 21 hm7G_associated_SNPs_4402 0 0 1 0 2 ZFPL1 chr11:64854192 3'AG 64854192 Downstream 9bp 4279 chr11 64854200 64854200 1 + G A SKCM 64854200 + 64854180 64854220 41 TCCTTCCTCCAGATCGATGAGGTGGTGAGCCCAGAGCCCGA TCCTTCCTCCAGATCGATGAAGTGGTGAGCCCAGAGCCCGA Direct Loss 0.944208679309395 0 NA NA prediction 0.88841735861879 Functional Loss - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854200 chr11:64854200 synonymous SNV . 0 21 hm7G_associated_SNPs_4402 0 0 1 0 2 ZFPL1 chr11:64854264 5'GT 64854264 Upstream 65bp 4280 chr19 6926469 6926469 1 + G A SKCM 6926469 + 6926449 6926489 41 GCTGTGATACTGTTCTTGATGGTCAGAAACCTGAAGGTGGT GCTGTGATACTGTTCTTGATAGTCAGAAACCTGAAGGTGGT Direct Loss 0.944208562000568 0 NA NA prediction 0.888417124001136 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6926469 chr19:6926469 nonsynonymous SNV 0.975 0 21 hm7G_associated_SNPs_4403 0 0 0 0 1 ADGRE1 chr19:6926377 3'AG 6926377 Downstream 93bp 4281 chr19 33202723 33202723 1 + G A CESC 33202723 + 33202703 33202743 41 TGTCTACTGAAAAAAAGACTGAGGAAATCATGAAGGAAGGC TGTCTACTGAAAAAAAGACTAAGGAAATCATGAAGGAAGGC Direct Loss 0.944201676565844 0 NA NA prediction 0.888403353131688 Functional Loss - NUDT19 ENSG00000213965 CDS Human protein_coding chr19:33202723 chr19:33202723 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_4404 0 0 1 0 1 NUDT19 chr19:33202658 3'AG 33202658 Downstream 66bp 4282 chr20 30674471 30674471 1 + G A GBM 30674471 + 30674451 30674491 41 AAGGTGGCAGTGAAGACGATGAAGCCAGGGAGCATGTCGGT AAGGTGGCAGTGAAGACGATAAAGCCAGGGAGCATGTCGGT Direct Loss 0.944197485046978 0 NA NA prediction 0.888394970093955 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30674471 chr20:30674471 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4405 0 0 0 0 1 HCK chr20:30674431 3'AG 30674431 Downstream 41bp 4283 chr21 37713740 37713740 1 + G A HNSC 37713740 + 37713720 37713760 41 ATTTTGAAAAGGATAAATATGATATCAGAATTCCCGAGGAT ATTTTGAAAAGGATAAATATAATATCAGAATTCCCGAGGAT Direct Loss 0.944197191723586 0 NA NA prediction 0.888394383447171 Functional Loss - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37713740 chr21:37713740 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_4406 0 0 1 0 1 MORC3 chr21:37713697 3'AG 37713697 Downstream 44bp 4284 chr13 23894810 23894810 1 + G A UCEC 23894810 + 23894790 23894830 41 CTCGGAGTCTAAGCATGGATGCCCCAAGGGGTGTGCATATT CTCGGAGTCTAAGCATGGATACCCCAAGGGGTGTGCATATT Direct Loss 0.944187543174412 0 NA NA prediction 0.888375086348823 Functional Loss - SGCG ENSG00000102683 CDS Human protein_coding chr13:23894810 chr13:23894810 nonsynonymous SNV 0.831 5 21 hm7G_associated_SNPs_4407 0 0 0 0 2 SGCG chr13:23894776 3'AG 23894776 Downstream 35bp 4285 chr13 23894810 23894810 1 + G A UCEC 23894810 + 23894790 23894830 41 CTCGGAGTCTAAGCATGGATGCCCCAAGGGGTGTGCATATT CTCGGAGTCTAAGCATGGATACCCCAAGGGGTGTGCATATT Direct Loss 0.944187543174412 0 NA NA prediction 0.888375086348823 Functional Loss - SGCG ENSG00000102683 CDS Human protein_coding chr13:23894810 chr13:23894810 nonsynonymous SNV 0.831 5 21 hm7G_associated_SNPs_4407 0 0 0 0 2 SGCG chr13:23894899 5'GT 23894899 Upstream 90bp 4286 chr11 65726735 65726735 1 + G A rs373566789 65726735 + 65726715 65726755 41 GGGCTGGATGAGGAGCAGCTGCTGTCTGAGGCAGGAAAGGT GGGCTGGATGAGGAGCAGCTACTGTCTGAGGCAGGAAAGGT Direct Loss 0.94415710258796 0 NA NA prediction 0.88831420517592 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65726735 chr11:65726735 unknown . 0 21 hm7G_associated_SNPs_4410 0 0 0 0 2 TSGA10IP chr11:65726661 3'AG 65726661 Downstream 75bp 4287 chr11 65726735 65726735 1 + G A rs373566789 65726735 + 65726715 65726755 41 GGGCTGGATGAGGAGCAGCTGCTGTCTGAGGCAGGAAAGGT GGGCTGGATGAGGAGCAGCTACTGTCTGAGGCAGGAAAGGT Direct Loss 0.94415710258796 0 NA NA prediction 0.88831420517592 Functional Loss - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65726735 chr11:65726735 unknown . 0 21 hm7G_associated_SNPs_4410 0 0 0 0 2 TSGA10IP chr11:65726785 5'GT 65726785 Upstream 51bp 4288 chr7 27187025 27187025 1 - C T GBM 27187025 - 27187005 27187045 41 GCAGCAGTACAAACCCGACAGCAGCAGCGGGCAGGGCAAAG GCAGCAGTACAAACCCGACAACAGCAGCGGGCAGGGCAAAG Direct Loss 0.9441429690469 0 NA NA prediction 0.8882859380938 Functional Loss - HOXA6 ENSG00000106006 CDS Human protein_coding chr7:27187025 chr7:27187025 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4411 0 0 1 0 2 HOXA6 chr7:27186927 5'GT 27186927 Upstream 99bp 4289 chr7 27187025 27187025 1 - C T GBM 27187025 - 27187005 27187045 41 GCAGCAGTACAAACCCGACAGCAGCAGCGGGCAGGGCAAAG GCAGCAGTACAAACCCGACAACAGCAGCGGGCAGGGCAAAG Direct Loss 0.9441429690469 0 NA NA prediction 0.8882859380938 Functional Loss - HOXA6 ENSG00000106006 CDS Human protein_coding chr7:27187025 chr7:27187025 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4411 0 0 1 0 2 HOXA6 chr7:27187041 3'AG 27187041 Downstream 17bp 4290 chr14 104563932 104563932 1 + G T rs1465163 104563932 + 104563912 104563952 41 AGCGACGGCCGTGAGAACCTGCTGGGGGCACTGCTCATGGC AGCGACGGCCGTGAGAACCTTCTGGGGGCACTGCTCATGGC Direct Loss 0.944137966229513 0 NA NA prediction 0.888275932459025 Functional Loss - ASPG ENSG00000166183 CDS Human protein_coding chr14:104563932 chr14:104563932 synonymous SNV . 0 21 hm7G_associated_SNPs_4413 0 0 0 0 2 ASPG chr14:104563891 3'AG 104563891 Downstream 42bp 4291 chr14 104563932 104563932 1 + G T rs1465163 104563932 + 104563912 104563952 41 AGCGACGGCCGTGAGAACCTGCTGGGGGCACTGCTCATGGC AGCGACGGCCGTGAGAACCTTCTGGGGGCACTGCTCATGGC Direct Loss 0.944137966229513 0 NA NA prediction 0.888275932459025 Functional Loss - ASPG ENSG00000166183 CDS Human protein_coding chr14:104563932 chr14:104563932 synonymous SNV . 0 21 hm7G_associated_SNPs_4413 0 0 0 0 2 ASPG chr14:104563974 5'GT 104563974 Upstream 43bp 4292 chr12 7031306 7031306 1 + G C rs190347711 7031306 + 7031286 7031326 41 ACATTCATTGCTGACCTGGTGGTGGGGCTGTGCACAGGCCA ACATTCATTGCTGACCTGGTCGTGGGGCTGTGCACAGGCCA Direct Loss 0.944137086011856 0 NA NA prediction 0.888274172023712 Functional Loss - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7031306 chr12:7031306 synonymous SNV . 0 21 hm7G_associated_SNPs_4414 0 0 1 0 2 ENO2 chr12:7031219 3'AG 7031219 Downstream 88bp 4293 chr12 7031306 7031306 1 + G C rs190347711 7031306 + 7031286 7031326 41 ACATTCATTGCTGACCTGGTGGTGGGGCTGTGCACAGGCCA ACATTCATTGCTGACCTGGTCGTGGGGCTGTGCACAGGCCA Direct Loss 0.944137086011856 0 NA NA prediction 0.888274172023712 Functional Loss - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7031306 chr12:7031306 synonymous SNV . 0 21 hm7G_associated_SNPs_4414 0 0 1 0 2 ENO2 chr12:7031327 5'GT 7031327 Upstream 22bp 4294 chr15 23261077 23261077 1 + G A HNSC 23261077 + 23261057 23261097 41 TCTAAAAGGAGAGAGGGCCCGGTGGCAGCAGAGGATGAGAA TCTAAAAGGAGAGAGGGCCCAGTGGCAGCAGAGGATGAGAA Direct Loss 0.944136158760526 0 NA NA prediction 0.888272317521052 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261077 chr15:23261077 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_4415 0 0 0 0 2 GOLGA8IP chr15:23261004 3'AG 23261004 Downstream 74bp 4295 chr15 23261077 23261077 1 + G A HNSC 23261077 + 23261057 23261097 41 TCTAAAAGGAGAGAGGGCCCGGTGGCAGCAGAGGATGAGAA TCTAAAAGGAGAGAGGGCCCAGTGGCAGCAGAGGATGAGAA Direct Loss 0.944136158760526 0 NA NA prediction 0.888272317521052 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261077 chr15:23261077 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_4415 0 0 0 0 2 GOLGA8IP chr15:23261111 5'GT 23261111 Upstream 35bp 4296 chr4 68449361 68449361 1 + G T UCEC 68449361 + 68449341 68449381 41 AACCCTTCTTTGGGAAATATGATCCTGAGGCCTGGTAGTGA AACCCTTCTTTGGGAAATATTATCCTGAGGCCTGGTAGTGA Direct Loss 0.944135896923585 0 NA NA prediction 0.88827179384717 Functional Loss - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68449361 chr4:68449361 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4416 0 0 0 0 1 STAP1 chr4:68449292 3'AG 68449292 Downstream 70bp 4297 chr19 10818000 10818000 1 + G A ESCA 10818000 + 10817980 10818020 41 TCGGACATCATCATGCAGCTGGACGACGTGGTTAGCAGTAC TCGGACATCATCATGCAGCTAGACGACGTGGTTAGCAGTAC Direct Loss 0.944133398359294 0 NA NA prediction 0.888266796718588 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10818000 chr19:10818000 synonymous SNV . 0 21 hm7G_associated_SNPs_4417 0 0 1 0 2 QTRT1 chr19:10817978 3'AG 10817978 Downstream 23bp 4298 chr19 10818000 10818000 1 + G A ESCA 10818000 + 10817980 10818020 41 TCGGACATCATCATGCAGCTGGACGACGTGGTTAGCAGTAC TCGGACATCATCATGCAGCTAGACGACGTGGTTAGCAGTAC Direct Loss 0.944133398359294 0 NA NA prediction 0.888266796718588 Functional Loss - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10818000 chr19:10818000 synonymous SNV . 0 21 hm7G_associated_SNPs_4417 0 0 1 0 2 QTRT1 chr19:10818056 5'GT 10818056 Upstream 57bp 4299 chr19 49513116 49513116 1 + G C HNSC 49513116 + 49513096 49513136 41 ACCAAGATGATTGAGTCCCTGACCAAGGACAAGGTCCAGGC ACCAAGATGATTGAGTCCCTCACCAAGGACAAGGTCCAGGC Direct Loss 0.944112272757376 0 NA NA prediction 0.888224545514751 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49513116 chr19:49513116 synonymous SNV . 0 21 hm7G_associated_SNPs_4419 0 0 1 0 3 RUVBL2 chr19:49513033 3'AG 49513033 Downstream 84bp 4300 chr19 49513116 49513116 1 + G C HNSC 49513116 + 49513096 49513136 41 ACCAAGATGATTGAGTCCCTGACCAAGGACAAGGTCCAGGC ACCAAGATGATTGAGTCCCTCACCAAGGACAAGGTCCAGGC Direct Loss 0.944112272757376 0 NA NA prediction 0.888224545514751 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49513116 chr19:49513116 synonymous SNV . 0 21 hm7G_associated_SNPs_4419 0 0 1 0 3 RUVBL2 chr19:49513128 5'GT 49513128 Upstream 13bp 4301 chr19 49513116 49513116 1 + G C HNSC 49513116 + 49513096 49513136 41 ACCAAGATGATTGAGTCCCTGACCAAGGACAAGGTCCAGGC ACCAAGATGATTGAGTCCCTCACCAAGGACAAGGTCCAGGC Direct Loss 0.944112272757376 0 NA NA prediction 0.888224545514751 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49513116 chr19:49513116 synonymous SNV . 0 21 hm7G_associated_SNPs_4419 0 0 1 0 3 RUVBL2 chr19:49513139 5'GT 49513139 Upstream 24bp 4302 chr1 75199007 75199007 1 + G T LUAD 75199007 + 75198987 75199027 41 TCAGCCGGAAGGGCAGTGTTGACGAGGATGTGGTAGAGCTT TCAGCCGGAAGGGCAGTGTTTACGAGGATGTGGTAGAGCTT Direct Loss 0.944097486129088 0 NA NA prediction 0.888194972258175 Functional Loss - TYW3 ENSG00000162623 CDS Human protein_coding chr1:75199007 chr1:75199007 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_4421 0 0 1 1 1 TYW3 chr1:75199102 5'GT 75199102 Upstream 96bp 4303 chr16 29816162 29816162 1 + G A BLCA 29816162 + 29816142 29816182 41 CCCTGGATGCCCTAGAGCCTGAGGAGAAGGCTGAGGACTGC CCCTGGATGCCCTAGAGCCTAAGGAGAAGGCTGAGGACTGC Direct Loss 0.944093106861459 0 NA NA prediction 0.888186213722918 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29816162 chr16:29816162 nonsynonymous SNV 0.538 0 21 hm7G_associated_SNPs_4422 0 0 1 0 1 KIF22 chr16:29816135 3'AG 29816135 Downstream 28bp 4304 chr1 147380093 147380093 1 + G A SKCM 147380093 + 147380073 147380113 41 TGGGTGAGAAATGGGCGACTGGAGTTTCCTGGGGAACATCT TGGGTGAGAAATGGGCGACTAGAGTTTCCTGGGGAACATCT Direct Loss 0.944081299872512 0 NA NA prediction 0.888162599745023 Functional Loss - GJA8 ENSG00000121634 CDS Human protein_coding chr1:147380093 chr1:147380093 stopgain 1.000 1 21 hm7G_associated_SNPs_4423 0 0 0 0 1 GJA8 chr1:147380072 3'AG 147380072 Downstream 22bp 4305 chr1 200868692 200868692 1 + G A SKCM 200868692 + 200868672 200868712 41 GCGAGGCTGGAGGCCTGCCTGGAGGAGCTGAGGAGACTCTG GCGAGGCTGGAGGCCTGCCTAGAGGAGCTGAGGAGACTCTG Direct Loss 0.944079166683525 0 NA NA prediction 0.888158333367051 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200868692 chr1:200868692 synonymous SNV . 0 21 hm7G_associated_SNPs_4424 0 0 1 0 2 C1orf106 chr1:200868601 3'AG 200868601 Downstream 92bp 4306 chr1 200868692 200868692 1 + G A SKCM 200868692 + 200868672 200868712 41 GCGAGGCTGGAGGCCTGCCTGGAGGAGCTGAGGAGACTCTG GCGAGGCTGGAGGCCTGCCTAGAGGAGCTGAGGAGACTCTG Direct Loss 0.944079166683525 0 NA NA prediction 0.888158333367051 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200868692 chr1:200868692 synonymous SNV . 0 21 hm7G_associated_SNPs_4424 0 0 1 0 2 C1orf106 chr1:200868725 5'GT 200868725 Upstream 34bp 4307 chr8 86385923 86385923 1 + G T UCEC 86385923 + 86385903 86385943 41 ATATATGTTTTAATTTTAGTGCTCAAGGGAGGACCCCTGGA ATATATGTTTTAATTTTAGTTCTCAAGGGAGGACCCCTGGA Direct Loss 0.944075484837896 0 NA NA prediction 0.888150969675792 Functional Loss - CA2 ENSG00000104267 CDS Human protein_coding chr8:86385923 chr8:86385923 synonymous SNV . 0 21 hm7G_associated_SNPs_4425 0 0 1 0 1 CA2 chr8:86385922 3'AG 86385922 Downstream 2bp 4308 chr15 67457371 67457371 1 + G A BLCA 67457371 + 67457351 67457391 41 TGTGAGTTCGCCTTCAATATGAAGAAGGACGAGGTCTGCGT TGTGAGTTCGCCTTCAATATAAAGAAGGACGAGGTCTGCGT Direct Loss 0.944074708568411 0 NA NA prediction 0.888149417136822 Functional Loss - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67457371 chr15:67457371 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4426 0 0 1 0 1 SMAD3 chr15:67457426 5'GT 67457426 Upstream 56bp 4309 chr15 40684206 40684206 1 + G A OV 40684206 + 40684186 40684226 41 TTTAACGAAACAGCCAAAAAGCAGATGGAGGAGTTACAGGT TTTAACGAAACAGCCAAAAAACAGATGGAGGAGTTACAGGT Direct Loss 0.944072325434147 0 NA NA prediction 0.888144650868294 Functional Loss - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40684206 chr15:40684206 synonymous SNV . 0 21 hm7G_associated_SNPs_4427 0 0 1 1 2 KNSTRN chr15:40684150 3'AG 40684150 Downstream 57bp 4310 chr15 40684206 40684206 1 + G A OV 40684206 + 40684186 40684226 41 TTTAACGAAACAGCCAAAAAGCAGATGGAGGAGTTACAGGT TTTAACGAAACAGCCAAAAAACAGATGGAGGAGTTACAGGT Direct Loss 0.944072325434147 0 NA NA prediction 0.888144650868294 Functional Loss - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40684206 chr15:40684206 synonymous SNV . 0 21 hm7G_associated_SNPs_4427 0 0 1 1 2 KNSTRN chr15:40684224 5'GT 40684224 Upstream 19bp 4311 chr10 99343356 99343356 1 + G C HNSC 99343356 + 99343336 99343376 41 GGAAAGACCCCGACGGACCTGGTGCAGCTCTGGCAGGCTGA GGAAAGACCCCGACGGACCTCGTGCAGCTCTGGCAGGCTGA Direct Loss 0.944060156469506 0 NA NA prediction 0.888120312939011 Functional Loss - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99343356 chr10:99343356 synonymous SNV . 0 21 hm7G_associated_SNPs_4428 0 0 0 0 1 ANKRD2 chr10:99343333 3'AG 99343333 Downstream 24bp 4312 chr15 23262319 23262319 1 + G A SKCM 23262319 + 23262299 23262339 41 CAGTTGGAGCAGCAAGTAAAGGAGCTACAGGAGAAGCTTGG CAGTTGGAGCAGCAAGTAAAAGAGCTACAGGAGAAGCTTGG Direct Loss 0.944059669361873 0 NA NA prediction 0.888119338723747 Functional Loss - GOLGA8IP ENSG00000153666 CDS Human other chr15:23262319 chr15:23262319 synonymous SNV . 0 21 hm7G_associated_SNPs_4429 0 0 0 0 1 GOLGA8IP chr15:23262275 3'AG 23262275 Downstream 45bp 4313 chr13 61068581 61068581 1 + G C LUSC 61068581 + 61068561 61068601 41 ATGTAAAGACCAAGACATTTGGAGGAGGTGGTGGTGGTGCT ATGTAAAGACCAAGACATTTCGAGGAGGTGGTGGTGGTGCT Direct Loss 0.944046833798137 0 NA NA prediction 0.888093667596273 Functional Loss - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61068581 chr13:61068581 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_4430 0 0 0 0 1 TDRD3 chr13:61068569 3'AG 61068569 Downstream 13bp 4314 chr3 100174643 100174643 1 + G T COAD 100174643 + 100174623 100174663 41 ACCTGAAAGCAGAAAGGAGAGAAATGAAAGAGAATGCCTGA ACCTGAAAGCAGAAAGGAGATAAATGAAAGAGAATGCCTGA Direct Loss 0.944036992924782 0 NA NA prediction 0.888073985849563 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100174643 chr3:100174643 nonsynonymous SNV 0.844 2 21 hm7G_associated_SNPs_4431 0 0 1 0 1 LNP1 chr3:100174621 3'AG 100174621 Downstream 23bp 4315 chrX 35969476 35969476 1 + G A SKCM 35969476 + 35969456 35969496 41 GATGCCGTGGGAGAAGAATTGGTAAGTAAGTGGTGCGACAG GATGCCGTGGGAGAAGAATTAGTAAGTAAGTGGTGCGACAG Direct Loss 0.944021621886811 0 NA NA prediction 0.888043243773622 Functional Loss - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35969476 chrX:35969476 synonymous SNV . 0 21 hm7G_associated_SNPs_4432 0 0 0 1 1 CFAP47 chrX:35969476 5'GT 35969476 Upstream 1bp 4316 chr1 28904058 28904058 1 + G T SARC 28904058 + 28904038 28904078 41 GAGGCCAACAAGGAGTTCATGGAACAGAGTGAGGAGCTGTA GAGGCCAACAAGGAGTTCATTGAACAGAGTGAGGAGCTGTA Direct Loss 0.944021294672539 0 NA NA prediction 0.888042589345078 Functional Loss - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28904058 chr1:28904058 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4433 0 0 1 0 1 TRNAU1AP chr1:28904012 3'AG 28904012 Downstream 47bp 4317 chr12 82824732 82824732 1 + G T LUAD 82824732 + 82824712 82824752 41 TTTAAAGGAAGAGAGATGGTGCTGTGGTCGTAATGCCAGAA TTTAAAGGAAGAGAGATGGTTCTGTGGTCGTAATGCCAGAA Direct Loss 0.943998671660154 0 NA NA prediction 0.887997343320308 Functional Loss - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82824732 chr12:82824732 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4436 0 0 1 0 2 METTL25 chr12:82824672 3'AG 82824672 Downstream 61bp 4318 chr12 82824732 82824732 1 + G T LUAD 82824732 + 82824712 82824752 41 TTTAAAGGAAGAGAGATGGTGCTGTGGTCGTAATGCCAGAA TTTAAAGGAAGAGAGATGGTTCTGTGGTCGTAATGCCAGAA Direct Loss 0.943998671660154 0 NA NA prediction 0.887997343320308 Functional Loss - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82824732 chr12:82824732 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4436 0 0 1 0 2 METTL25 chr12:82824766 5'GT 82824766 Upstream 35bp 4319 chr20 13269291 13269291 1 + G A BLCA 13269291 + 13269271 13269311 41 CTTGTGGCTACGCGTGCACTGCAACAGAATCGAGGACCTGT CTTGTGGCTACGCGTGCACTACAACAGAATCGAGGACCTGT Direct Loss 0.94399499971911 0 NA NA prediction 0.88798999943822 Functional Loss - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13269291 chr20:13269291 nonsynonymous SNV 0.802 4 21 hm7G_associated_SNPs_4437 0 0 0 0 1 ISM1 chr20:13269330 5'GT 13269330 Upstream 40bp 4320 chr6 74116144 74116144 1 + G T STAD 74116144 + 74116124 74116164 41 TTATAGGAGTAGCCCAGACTGGAACAGGAAAGACATTGTGT TTATAGGAGTAGCCCAGACTTGAACAGGAAAGACATTGTGT Direct Loss 0.943990840112386 0 NA NA prediction 0.887981680224771 Functional Loss - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74116144 chr6:74116144 stopgain 0.967 1 21 hm7G_associated_SNPs_4439 0 0 0 0 2 DDX43 chr6:74116087 3'AG 74116087 Downstream 58bp 4321 chr6 74116144 74116144 1 + G T STAD 74116144 + 74116124 74116164 41 TTATAGGAGTAGCCCAGACTGGAACAGGAAAGACATTGTGT TTATAGGAGTAGCCCAGACTTGAACAGGAAAGACATTGTGT Direct Loss 0.943990840112386 0 NA NA prediction 0.887981680224771 Functional Loss - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74116144 chr6:74116144 stopgain 0.967 1 21 hm7G_associated_SNPs_4439 0 0 0 0 2 DDX43 chr6:74116205 5'GT 74116205 Upstream 62bp 4322 chr17 31258549 31258549 1 + G T LIHC 31258549 + 31258529 31258569 41 CAGGAGCCCTCTGGAAGCATGGAGACTGTGGTGATTGTTGC CAGGAGCCCTCTGGAAGCATTGAGACTGTGGTGATTGTTGC Direct Loss 0.943979670033256 0 NA NA prediction 0.887959340066513 Functional Loss - TMEM98 ENSG00000006042 CDS Human protein_coding chr17:31258549 chr17:31258549 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4441 0 0 1 0 1 TMEM98 chr17:31258493 3'AG 31258493 Downstream 57bp 4323 chr19 56162797 56162797 1 + G T ESCA 56162797 + 56162777 56162817 41 GCCAGTGAGAGGAGGCGGCAGAAGCAGAAGGGAGGTGCTAG GCCAGTGAGAGGAGGCGGCATAAGCAGAAGGGAGGTGCTAG Direct Loss 0.943966266927745 0 NA NA prediction 0.88793253385549 Functional Loss - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56162797 chr19:56162797 nonsynonymous SNV 0.926 1 21 hm7G_associated_SNPs_4442 0 0 0 0 1 CCDC106 chr19:56162861 5'GT 56162861 Upstream 65bp 4324 chr9 33248468 33248468 1 + G A LUAD 33248468 + 33248448 33248488 41 CATGAAAGATGGCAAATGCTGATCCCACAGGAGCACCTCAA CATGAAAGATGGCAAATGCTAATCCCACAGGAGCACCTCAA Direct Loss 0.943959495252694 0 NA NA prediction 0.887918990505388 Functional Loss - SPINK4 ENSG00000122711 CDS Human protein_coding chr9:33248468 chr9:33248468 synonymous SNV . 0 21 hm7G_associated_SNPs_4445 0 0 0 0 1 SPINK4 chr9:33248424 3'AG 33248424 Downstream 45bp 4325 chr10 26513545 26513545 1 + G C LUSC 26513545 + 26513525 26513565 41 AATGAGAGAAATCATTGGCTGGCCAGGGGGCTCTGGCGATG AATGAGAGAAATCATTGGCTCGCCAGGGGGCTCTGGCGATG Direct Loss 0.943953542386725 0 NA NA prediction 0.887907084773451 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26513545 chr10:26513545 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4446 0 0 0 0 2 GAD2 chr10:26513468 3'AG 26513468 Downstream 78bp 4326 chr10 26513545 26513545 1 + G C LUSC 26513545 + 26513525 26513565 41 AATGAGAGAAATCATTGGCTGGCCAGGGGGCTCTGGCGATG AATGAGAGAAATCATTGGCTCGCCAGGGGGCTCTGGCGATG Direct Loss 0.943953542386725 0 NA NA prediction 0.887907084773451 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26513545 chr10:26513545 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4446 0 0 0 0 2 GAD2 chr10:26513580 5'GT 26513580 Upstream 36bp 4327 chr12 117448145 117448145 1 + G T LUSC 117448145 + 117448125 117448165 41 CAGATCCTGGTGTATAGCCTGGAAGCAGGACGCCGCCTCTT CAGATCCTGGTGTATAGCCTTGAAGCAGGACGCCGCCTCTT Direct Loss 0.943948291028366 0 NA NA prediction 0.887896582056733 Functional Loss - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117448145 chr12:117448145 synonymous SNV . 0 21 hm7G_associated_SNPs_4447 0 0 0 0 1 FBXW8 chr12:117448128 3'AG 117448128 Downstream 18bp 4328 chr5 3601109 3601109 1 + G A STAD 3601109 + 3601089 3601129 41 CCATGCAGCTCTCTGGCCCCGCAGGAGGGAACGCCGCGGAT CCATGCAGCTCTCTGGCCCCACAGGAGGGAACGCCGCGGAT Direct Loss 0.943947725026891 0 NA NA prediction 0.887895450053783 Functional Loss - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3601109 chr5:3601109 synonymous SNV . 0 21 hm7G_associated_SNPs_4448 0 0 0 0 1 IRX1 chr5:3601097 3'AG 3601097 Downstream 13bp 4329 chr15 34517318 34517318 1 + G T ACC 34517318 + 34517298 34517338 41 TAGGACGCAGCTGTTGCCATGACGGCCCAGGGGGGCCTGGT TAGGACGCAGCTGTTGCCATTACGGCCCAGGGGGGCCTGGT Direct Loss 0.94394600296717 0 NA NA prediction 0.88789200593434 Functional Loss - EMC4 ENSG00000128463 CDS Human protein_coding chr15:34517318 chr15:34517318 nonsynonymous SNV 0.983 2 21 hm7G_associated_SNPs_4449 0 0 1 0 1 EMC4 chr15:34517401 5'GT 34517401 Upstream 84bp 4330 chr20 31619489 31619489 1 + G A LIHC 31619489 + 31619469 31619509 41 TGCCTGGCACTCTGCAGCCTGCTGACTGGCACGCGAGCTGA TGCCTGGCACTCTGCAGCCTACTGACTGGCACGCGAGCTGA Direct Loss 0.943936482253791 0 NA NA prediction 0.887872964507582 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31619489 chr20:31619489 synonymous SNV . 0 21 hm7G_associated_SNPs_4452 0 0 0 0 2 BPIFB6 chr20:31619550 5'GT 31619550 Upstream 62bp 4331 chr20 31619489 31619489 1 + G A LIHC 31619489 + 31619469 31619509 41 TGCCTGGCACTCTGCAGCCTGCTGACTGGCACGCGAGCTGA TGCCTGGCACTCTGCAGCCTACTGACTGGCACGCGAGCTGA Direct Loss 0.943936482253791 0 NA NA prediction 0.887872964507582 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31619489 chr20:31619489 synonymous SNV . 0 21 hm7G_associated_SNPs_4452 0 0 0 0 2 BPIFB6 chr20:31619553 5'GT 31619553 Upstream 65bp 4332 chr18 44603773 44603773 1 + G T UCEC 44603773 + 44603753 44603793 41 ACAGAGTTACTGGTGCAGATGGATGGGCTGGCACGCTCAGA ACAGAGTTACTGGTGCAGATTGATGGGCTGGCACGCTCAGA Direct Loss 0.943919017443192 0 NA NA prediction 0.887838034886383 Functional Loss - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44603773 chr18:44603773 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_4454 0 0 0 0 2 KATNAL2 chr18:44603722 3'AG 44603722 Downstream 52bp 4333 chr18 44603773 44603773 1 + G T UCEC 44603773 + 44603753 44603793 41 ACAGAGTTACTGGTGCAGATGGATGGGCTGGCACGCTCAGA ACAGAGTTACTGGTGCAGATTGATGGGCTGGCACGCTCAGA Direct Loss 0.943919017443192 0 NA NA prediction 0.887838034886383 Functional Loss - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44603773 chr18:44603773 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_4454 0 0 0 0 2 KATNAL2 chr18:44603832 5'GT 44603832 Upstream 60bp 4334 chr8 144464073 144464073 1 + G A rs34746679 144464073 + 144464053 144464093 41 TGGTGACGGAGCTGAAGGCTGCGGGAGAGGCGGGCGCCAGC TGGTGACGGAGCTGAAGGCTACGGGAGAGGCGGGCGCCAGC Direct Loss 0.943917800405034 0 NA NA prediction 0.887835600810068 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144464073 chr8:144464073 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_4455 0 0 1 0 2 RHPN1 chr8:144463977 3'AG 144463977 Downstream 97bp 4335 chr8 144464073 144464073 1 + G A rs34746679 144464073 + 144464053 144464093 41 TGGTGACGGAGCTGAAGGCTGCGGGAGAGGCGGGCGCCAGC TGGTGACGGAGCTGAAGGCTACGGGAGAGGCGGGCGCCAGC Direct Loss 0.943917800405034 0 NA NA prediction 0.887835600810068 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144464073 chr8:144464073 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_4455 0 0 1 0 2 RHPN1 chr8:144464138 5'GT 144464138 Upstream 66bp 4336 chr12 57994217 57994217 1 + G T SARC 57994217 + 57994197 57994237 41 GAGAAGCTGAAGAGAGATGTGGAGGTGATGATTGGGTGCTC GAGAAGCTGAAGAGAGATGTTGAGGTGATGATTGGGTGCTC Direct Loss 0.943915407369303 0 NA NA prediction 0.887830814738605 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57994217 chr12:57994217 synonymous SNV . 0 21 hm7G_associated_SNPs_4456 0 0 0 0 1 PIP4K2C chr12:57994220 5'GT 57994220 Upstream 4bp 4337 chr7 150840832 150840832 1 + G T LUSC 150840832 + 150840812 150840852 41 TTTCTCCTACAGTACGGGGTGGACGTGAGGAGCCGGGACGC TTTCTCCTACAGTACGGGGTTGACGTGAGGAGCCGGGACGC Direct Loss 0.943906176739646 0 NA NA prediction 0.887812353479292 Functional Loss - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150840832 chr7:150840832 synonymous SNV . 0 21 hm7G_associated_SNPs_4457 0 0 1 0 1 AGAP3 chr7:150840824 3'AG 150840824 Downstream 9bp 4338 chr20 33114081 33114081 1 + G A BLCA 33114081 + 33114061 33114101 41 GTTTTCTGGCAGGCAGAGGTGGAGGAGACACTGAAGCGACT GTTTTCTGGCAGGCAGAGGTAGAGGAGACACTGAAGCGACT Direct Loss 0.943878325588589 0 NA NA prediction 0.887756651177179 Functional Loss - DYNLRB1 ENSG00000125971 CDS Human protein_coding chr20:33114081 chr20:33114081 synonymous SNV . 0 21 hm7G_associated_SNPs_4459 0 0 1 0 1 DYNLRB1 chr20:33114148 5'GT 33114148 Upstream 68bp 4339 chr12 53775499 53775499 1 + G T DLBC 53775499 + 53775479 53775519 41 TGAAAATTGAAAAAGGAGTTGGTGGCAATAATGGGGGCAAT TGAAAATTGAAAAAGGAGTTTGTGGCAATAATGGGGGCAAT Direct Loss 0.943869893781116 0 NA NA prediction 0.887739787562231 Functional Loss - SP1 ENSG00000185591 CDS Human protein_coding chr12:53775499 chr12:53775499 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4460 0 0 1 0 2 SP1 chr12:53775443 3'AG 53775443 Downstream 57bp 4340 chr12 53775499 53775499 1 + G T DLBC 53775499 + 53775479 53775519 41 TGAAAATTGAAAAAGGAGTTGGTGGCAATAATGGGGGCAAT TGAAAATTGAAAAAGGAGTTTGTGGCAATAATGGGGGCAAT Direct Loss 0.943869893781116 0 NA NA prediction 0.887739787562231 Functional Loss - SP1 ENSG00000185591 CDS Human protein_coding chr12:53775499 chr12:53775499 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4460 0 0 1 0 2 SP1 chr12:53775597 5'GT 53775597 Upstream 99bp 4341 chr10 86014178 86014178 1 + G T LUAD 86014178 + 86014158 86014198 41 AGTCTCATGGAGCAGAAACTGGGGAAGAGTGGCCATCTCCA AGTCTCATGGAGCAGAAACTTGGGAAGAGTGGCCATCTCCA Direct Loss 0.943866905707697 0 NA NA prediction 0.887733811415394 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86014178 chr10:86014178 synonymous SNV . 0 21 hm7G_associated_SNPs_4461 0 0 0 0 2 RGR chr10:86014082 3'AG 86014082 Downstream 97bp 4342 chr10 86014178 86014178 1 + G T LUAD 86014178 + 86014158 86014198 41 AGTCTCATGGAGCAGAAACTGGGGAAGAGTGGCCATCTCCA AGTCTCATGGAGCAGAAACTTGGGAAGAGTGGCCATCTCCA Direct Loss 0.943866905707697 0 NA NA prediction 0.887733811415394 Functional Loss - RGR ENSG00000148604 CDS Human protein_coding chr10:86014178 chr10:86014178 synonymous SNV . 0 21 hm7G_associated_SNPs_4461 0 0 0 0 2 RGR chr10:86014199 5'GT 86014199 Upstream 22bp 4343 chr3 186505290 186505290 1 + G A UCEC 186505290 + 186505270 186505310 41 TTATTAATTTGCAGCATGGTGACATGGACCAGAAGGAGAGA TTATTAATTTGCAGCATGGTAACATGGACCAGAAGGAGAGA Direct Loss 0.943848697883095 0 NA NA prediction 0.88769739576619 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505290 chr3:186505290 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4465 0 0 1 0 2 EIF4A2 chr3:186505284 3'AG 186505284 Downstream 7bp 4344 chr3 186505290 186505290 1 + G A UCEC 186505290 + 186505270 186505310 41 TTATTAATTTGCAGCATGGTGACATGGACCAGAAGGAGAGA TTATTAATTTGCAGCATGGTAACATGGACCAGAAGGAGAGA Direct Loss 0.943848697883095 0 NA NA prediction 0.88769739576619 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505290 chr3:186505290 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4465 0 0 1 0 2 EIF4A2 chr3:186505373 5'GT 186505373 Upstream 84bp 4345 chr18 20602106 20602106 1 + G T ACC 20602106 + 20602086 20602126 41 TATTAGTATTATGCAGATATGCCAGCAGAAGAAAGAGAAAA TATTAGTATTATGCAGATATTCCAGCAGAAGAAAGAGAAAA Direct Loss 0.943843646458898 0 NA NA prediction 0.887687292917796 Functional Loss - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20602106 chr18:20602106 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_4466 0 0 1 0 1 RBBP8 chr18:20602092 3'AG 20602092 Downstream 15bp 4346 chr6 126319271 126319271 1 + G A BLCA 126319271 + 126319251 126319291 41 TCTCTTAAAAACTACCCTGTGGAGAAGATGGTGCGTAGTAA TCTCTTAAAAACTACCCTGTAGAGAAGATGGTGCGTAGTAA Direct Loss 0.943831946752209 0 NA NA prediction 0.887663893504419 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126319271 chr6:126319271 synonymous SNV . 0 21 hm7G_associated_SNPs_4468 0 0 1 0 2 TRMT11 chr6:126319199 3'AG 126319199 Downstream 73bp 4347 chr6 126319271 126319271 1 + G A BLCA 126319271 + 126319251 126319291 41 TCTCTTAAAAACTACCCTGTGGAGAAGATGGTGCGTAGTAA TCTCTTAAAAACTACCCTGTAGAGAAGATGGTGCGTAGTAA Direct Loss 0.943831946752209 0 NA NA prediction 0.887663893504419 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126319271 chr6:126319271 synonymous SNV . 0 21 hm7G_associated_SNPs_4468 0 0 1 0 2 TRMT11 chr6:126319280 5'GT 126319280 Upstream 10bp 4348 chr11 74687942 74687942 1 + G A OV 74687942 + 74687922 74687962 41 TGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGG TGAAGCTGACCTTCATCAGTAGGAGAACAAAGCAGCAGCGG Direct Loss 0.94382558404322 0 NA NA prediction 0.887651168086441 Functional Loss - SPCS2 ENSG00000118363 CDS Human protein_coding chr11:74687942 chr11:74687942 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_4469 0 0 0 0 1 SPCS2 chr11:74687902 3'AG 74687902 Downstream 41bp 4349 chr12 7459171 7459171 1 + G A UCEC 7459171 + 7459151 7459191 41 CAGCCCTGTGGTGGGTGAATGGCAAAGGGGATGAGGTAAAA CAGCCCTGTGGTGGGTGAATAGCAAAGGGGATGAGGTAAAA Direct Loss 0.943817809255955 0 NA NA prediction 0.88763561851191 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7459171 chr12:7459171 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_4470 0 0 0 0 1 ACSM4 chr12:7459129 3'AG 7459129 Downstream 43bp 4350 chr18 21086941 21086941 1 + G A OV 21086941 + 21086921 21086961 41 TTTCTTCTTAAAGAATGGATGACAAAGGAGAAGTGAAGTGC TTTCTTCTTAAAGAATGGATAACAAAGGAGAAGTGAAGTGC Direct Loss 0.943796830398174 0 NA NA prediction 0.887593660796347 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21086941 chr18:21086941 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_4474 0 0 0 2 2 C18orf8 chr18:21086934 3'AG 21086934 Downstream 8bp 4351 chr18 21086941 21086941 1 + G A OV 21086941 + 21086921 21086961 41 TTTCTTCTTAAAGAATGGATGACAAAGGAGAAGTGAAGTGC TTTCTTCTTAAAGAATGGATAACAAAGGAGAAGTGAAGTGC Direct Loss 0.943796830398174 0 NA NA prediction 0.887593660796347 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21086941 chr18:21086941 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_4474 0 0 0 2 2 C18orf8 chr18:21087018 5'GT 21087018 Upstream 78bp 4352 chr5 64084814 64084814 1 + G T UCEC 64084814 + 64084794 64084834 41 TCATTTGGAGAGGAAGCTGAGGAAGAAGAGGAGGAAGTAAA TCATTTGGAGAGGAAGCTGATGAAGAAGAGGAGGAAGTAAA Direct Loss 0.943781033217452 0 NA NA prediction 0.887562066434904 Functional Loss - CWC27 ENSG00000153015 CDS Human protein_coding chr5:64084814 chr5:64084814 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4476 0 0 1 0 2 CWC27 chr5:64084778 3'AG 64084778 Downstream 37bp 4353 chr5 64084814 64084814 1 + G T UCEC 64084814 + 64084794 64084834 41 TCATTTGGAGAGGAAGCTGAGGAAGAAGAGGAGGAAGTAAA TCATTTGGAGAGGAAGCTGATGAAGAAGAGGAGGAAGTAAA Direct Loss 0.943781033217452 0 NA NA prediction 0.887562066434904 Functional Loss - CWC27 ENSG00000153015 CDS Human protein_coding chr5:64084814 chr5:64084814 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4476 0 0 1 0 2 CWC27 chr5:64084847 5'GT 64084847 Upstream 34bp 4354 chr20 18724849 18724849 1 + G A COAD 18724849 + 18724829 18724869 41 CCCGAAAAGAAGACCGCAGTGCCAGCAGCGGGGCTGAGGGC CCCGAAAAGAAGACCGCAGTACCAGCAGCGGGGCTGAGGGC Direct Loss 0.943776201238291 0 NA NA prediction 0.887552402476581 Functional Loss - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18724849 chr20:18724849 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4477 0 0 1 0 1 DTD1 chr20:18724915 5'GT 18724915 Upstream 67bp 4355 chr15 45723015 45723015 1 + G C BLCA 45723015 + 45722995 45723035 41 ATGAGCTTTTTCCAACTCCTGATGAAAAGGAAGGAAGTAAG ATGAGCTTTTTCCAACTCCTCATGAAAAGGAAGGAAGTAAG Direct Loss 0.943768877826521 0 NA NA prediction 0.887537755653041 Functional Loss - C15orf48 ENSG00000166920 CDS Human antisense chr15:45723015 chr15:45723015 synonymous SNV . 0 21 hm7G_associated_SNPs_4478 0 0 0 0 2 C15orf48 chr15:45722968 3'AG 45722968 Downstream 48bp 4356 chr15 45723015 45723015 1 + G C BLCA 45723015 + 45722995 45723035 41 ATGAGCTTTTTCCAACTCCTGATGAAAAGGAAGGAAGTAAG ATGAGCTTTTTCCAACTCCTCATGAAAAGGAAGGAAGTAAG Direct Loss 0.943768877826521 0 NA NA prediction 0.887537755653041 Functional Loss - C15orf48 ENSG00000166920 CDS Human protein_coding chr15:45723015 chr15:45723015 synonymous SNV . 0 21 hm7G_associated_SNPs_4478 0 0 0 0 2 C15orf48 chr15:45723030 5'GT 45723030 Upstream 16bp 4357 chr7 129908820 129908820 1 + G A LIHC 129908820 + 129908800 129908840 41 GAAGAACAAATTAAAAATCTGCTACAATTGGAGGCTCAAGA GAAGAACAAATTAAAAATCTACTACAATTGGAGGCTCAAGA Direct Loss 0.943762867810769 0 NA NA prediction 0.887525735621539 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129908820 chr7:129908820 synonymous SNV . 0 21 hm7G_associated_SNPs_4479 0 0 0 0 2 CPA2 chr7:129908769 3'AG 129908769 Downstream 52bp 4358 chr7 129908820 129908820 1 + G A LIHC 129908820 + 129908800 129908840 41 GAAGAACAAATTAAAAATCTGCTACAATTGGAGGCTCAAGA GAAGAACAAATTAAAAATCTACTACAATTGGAGGCTCAAGA Direct Loss 0.943762867810769 0 NA NA prediction 0.887525735621539 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129908820 chr7:129908820 synonymous SNV . 0 21 hm7G_associated_SNPs_4479 0 0 0 0 2 CPA2 chr7:129908850 5'GT 129908850 Upstream 31bp 4359 chr17 67513679 67513679 1 + G A SKCM 67513679 + 67513659 67513699 41 GATGACCTGGAGCCTATAATGGAACTGGGACGAGGTGCGTA GATGACCTGGAGCCTATAATAGAACTGGGACGAGGTGCGTA Direct Loss 0.943755694864345 0 NA NA prediction 0.887511389728691 Functional Loss - MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67513679 chr17:67513679 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_4480 0 0 1 0 2 MAP2K6 chr17:67513641 3'AG 67513641 Downstream 39bp 4360 chr17 67513679 67513679 1 + G A SKCM 67513679 + 67513659 67513699 41 GATGACCTGGAGCCTATAATGGAACTGGGACGAGGTGCGTA GATGACCTGGAGCCTATAATAGAACTGGGACGAGGTGCGTA Direct Loss 0.943755694864345 0 NA NA prediction 0.887511389728691 Functional Loss - MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67513679 chr17:67513679 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_4480 0 0 1 0 2 MAP2K6 chr17:67513754 5'GT 67513754 Upstream 76bp 4361 chr4 57384902 57384902 1 + G T SARC 57384902 + 57384882 57384922 41 TACCTATCCAAGGGATTGCTGCTGATCTTTGTGGTGGATTC TACCTATCCAAGGGATTGCTTCTGATCTTTGTGGTGGATTC Direct Loss 0.943752015896777 0 NA NA prediction 0.887504031793554 Functional Loss - ARL9 ENSG00000196503 CDS Human protein_coding chr4:57384902 chr4:57384902 synonymous SNV . 0 21 hm7G_associated_SNPs_4481 0 0 0 0 1 ARL9 chr4:57384844 3'AG 57384844 Downstream 59bp 4362 chr14 20923813 20923813 1 + G A STAD 20923813 + 20923793 20923833 41 TTCGTAACGGGAATGCCGAAGCGTGGGAAAAAGGGAGCGGT TTCGTAACGGGAATGCCGAAACGTGGGAAAAAGGGAGCGGT Direct Loss 0.943747358183743 0 NA NA prediction 0.887494716367485 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20923813 chr14:20923813 synonymous SNV . 0 21 hm7G_associated_SNPs_4482 0 0 1 0 2 APEX1 chr14:20923737 3'AG 20923737 Downstream 77bp 4363 chr14 20923813 20923813 1 + G A STAD 20923813 + 20923793 20923833 41 TTCGTAACGGGAATGCCGAAGCGTGGGAAAAAGGGAGCGGT TTCGTAACGGGAATGCCGAAACGTGGGAAAAAGGGAGCGGT Direct Loss 0.943747358183743 0 NA NA prediction 0.887494716367485 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20923813 chr14:20923813 synonymous SNV . 0 21 hm7G_associated_SNPs_4482 0 0 1 0 2 APEX1 chr14:20923862 5'GT 20923862 Upstream 50bp 4364 chr17 38126822 38126822 1 + G T LUAD 38126822 + 38126802 38126842 41 ATGGAGGTGGTGGAGACGGTGCAGGAGGTCACACTGGAGCG ATGGAGGTGGTGGAGACGGTTCAGGAGGTCACACTGGAGCG Direct Loss 0.943745807986983 0 NA NA prediction 0.887491615973966 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38126822 chr17:38126822 synonymous SNV . 0 21 hm7G_associated_SNPs_4483 0 0 0 0 2 GSDMA chr17:38126735 3'AG 38126735 Downstream 88bp 4365 chr17 38126822 38126822 1 + G T LUAD 38126822 + 38126802 38126842 41 ATGGAGGTGGTGGAGACGGTGCAGGAGGTCACACTGGAGCG ATGGAGGTGGTGGAGACGGTTCAGGAGGTCACACTGGAGCG Direct Loss 0.943745807986983 0 NA NA prediction 0.887491615973966 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38126822 chr17:38126822 synonymous SNV . 0 21 hm7G_associated_SNPs_4483 0 0 0 0 2 GSDMA chr17:38126900 5'GT 38126900 Upstream 79bp 4366 chr20 44576172 44576172 1 + G A UCEC 44576172 + 44576152 44576192 41 TTTGCCCGCAGGGAGGAAATGCACTACAAGGCCGTCCACAA TTTGCCCGCAGGGAGGAAATACACTACAAGGCCGTCCACAA Direct Loss 0.943744782713228 0 NA NA prediction 0.887489565426457 Functional Loss - PCIF1 ENSG00000100982 CDS Human protein_coding chr20:44576172 chr20:44576172 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4484 0 0 0 0 1 PCIF1 chr20:44576163 3'AG 44576163 Downstream 10bp 4367 chr17 40766958 40766958 1 + G C CESC 40766958 + 40766938 40766978 41 ACATGTTCAAGGACAACTTTGATGAGATGGACACATCCAGG ACATGTTCAAGGACAACTTTCATGAGATGGACACATCCAGG Direct Loss 0.943709936045945 0 NA NA prediction 0.88741987209189 Functional Loss - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40766958 chr17:40766958 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_4487 0 0 1 0 1 TUBG1 chr17:40766862 3'AG 40766862 Downstream 97bp 4368 chr7 123514860 123514860 1 + G A UCEC 123514860 + 123514840 123514880 41 AAAGTGCTGCCTTGGGAGCTGCAGGCATTGTTATTTGGGGA AAAGTGCTGCCTTGGGAGCTACAGGCATTGTTATTTGGGGA Direct Loss 0.943706745773454 0 NA NA prediction 0.887413491546908 Functional Loss - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123514860 chr7:123514860 nonsynonymous SNV 0.989 2 21 hm7G_associated_SNPs_4489 0 0 0 0 2 HYAL4 chr7:123514815 3'AG 123514815 Downstream 46bp 4369 chr7 123514860 123514860 1 + G A UCEC 123514860 + 123514840 123514880 41 AAAGTGCTGCCTTGGGAGCTGCAGGCATTGTTATTTGGGGA AAAGTGCTGCCTTGGGAGCTACAGGCATTGTTATTTGGGGA Direct Loss 0.943706745773454 0 NA NA prediction 0.887413491546908 Functional Loss - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123514860 chr7:123514860 nonsynonymous SNV 0.989 2 21 hm7G_associated_SNPs_4489 0 0 0 0 2 HYAL4 chr7:123514904 5'GT 123514904 Upstream 45bp 4370 chr11 63720240 63720240 1 + G A rs149157882 63720240 + 63720220 63720260 41 TCACCTAGCTATGAAGTGCAGTTGGAAAGCAAGGTGCGGCG TCACCTAGCTATGAAGTGCAATTGGAAAGCAAGGTGCGGCG Direct Loss 0.943687329852147 0 NA NA prediction 0.887374659704294 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63720240 chr11:63720240 synonymous SNV . 0 21 hm7G_associated_SNPs_4492 0 0 1 0 2 NAA40 chr11:63720228 3'AG 63720228 Downstream 13bp 4371 chr11 63720240 63720240 1 + G A rs149157882 63720240 + 63720220 63720260 41 TCACCTAGCTATGAAGTGCAGTTGGAAAGCAAGGTGCGGCG TCACCTAGCTATGAAGTGCAATTGGAAAGCAAGGTGCGGCG Direct Loss 0.943687329852147 0 NA NA prediction 0.887374659704294 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63720240 chr11:63720240 synonymous SNV . 0 21 hm7G_associated_SNPs_4492 0 0 1 0 2 NAA40 chr11:63720311 5'GT 63720311 Upstream 72bp 4372 chr7 128457885 128457885 1 + G T LUSC 128457885 + 128457865 128457905 41 GGTCATCTCGGCTTTGCTCTGGTGCTGGTGGGCTGAGACGT GGTCATCTCGGCTTTGCTCTTGTGCTGGTGGGCTGAGACGT Direct Loss 0.943687077607613 0 NA NA prediction 0.887374155215227 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128457885 chr7:128457885 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4493 0 0 1 0 2 CCDC136 chr7:128457812 3'AG 128457812 Downstream 74bp 4373 chr7 128457885 128457885 1 + G T LUSC 128457885 + 128457865 128457905 41 GGTCATCTCGGCTTTGCTCTGGTGCTGGTGGGCTGAGACGT GGTCATCTCGGCTTTGCTCTTGTGCTGGTGGGCTGAGACGT Direct Loss 0.943687077607613 0 NA NA prediction 0.887374155215227 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128457885 chr7:128457885 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4493 0 0 1 0 2 CCDC136 chr7:128457918 5'GT 128457918 Upstream 34bp 4374 chrX 155254749 155254749 1 + G A BLCA 155254749 + 155254729 155254769 41 TCGGATCTCTTCAACAAGCTGGTCATGAGGCGCAAGGGTAG TCGGATCTCTTCAACAAGCTAGTCATGAGGCGCAAGGGTAG Direct Loss 0.943677256267105 0 NA NA prediction 0.88735451253421 Functional Loss - DDX11L16 ENSG00000182484;ENSG00000270726 ncRNA_exonic Human other chrX:155254749 chrX:155254749 . . 0 21 hm7G_associated_SNPs_4497 0 0 1 0 1 DDX11L16 chrX:155254697 3'AG 155254697 Downstream 53bp 4375 chr19 4954409 4954409 1 + G A OV 4954409 + 4954389 4954429 41 GCCAACCGAGAGCGAGAGAAGGAGAACAGCAAGAGGGAGGA GCCAACCGAGAGCGAGAGAAAGAGAACAGCAAGAGGGAGGA Direct Loss 0.943665919213661 0 NA NA prediction 0.887331838427322 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954409 chr19:4954409 . . 0 21 hm7G_associated_SNPs_4499 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 48bp 4376 chr19 4954409 4954409 1 + G A OV 4954409 + 4954389 4954429 41 GCCAACCGAGAGCGAGAGAAGGAGAACAGCAAGAGGGAGGA GCCAACCGAGAGCGAGAGAAAGAGAACAGCAAGAGGGAGGA Direct Loss 0.943665919213661 0 NA NA prediction 0.887331838427322 Functional Loss - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954409 chr19:4954409 . . 0 21 hm7G_associated_SNPs_4499 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 92bp 4377 chr5 128440935 128440935 1 + G T STAD 128440935 + 128440915 128440955 41 TAACAGAACAATACCCTAAAGGTCTTGGGAGCACGGTTCAA TAACAGAACAATACCCTAAATGTCTTGGGAGCACGGTTCAA Direct Loss 0.943658443990139 0 NA NA prediction 0.887316887980279 Functional Loss - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440935 chr5:128440935 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4500 0 0 1 0 1 ISOC1 chr5:128440878 3'AG 128440878 Downstream 58bp 4378 chr4 2664878 2664878 1 + G T BLCA 2664878 + 2664858 2664898 41 GCAGTAGTTCCTCAGAAGCTGATGATGAAGAAGCGGACGGC GCAGTAGTTCCTCAGAAGCTTATGATGAAGAAGCGGACGGC Direct Loss 0.943650788324066 0 NA NA prediction 0.887301576648132 Functional Loss - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2664878 chr4:2664878 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_4503 0 0 1 0 1 FAM193A chr4:2664836 3'AG 2664836 Downstream 43bp 4379 chr16 84035925 84035925 1 + G C OV 84035925 + 84035905 84035945 41 GTGTCTCTCTCCTTTTAGCTGCTTGGTGCACGGTGGGACGG GTGTCTCTCTCCTTTTAGCTCCTTGGTGCACGGTGGGACGG Direct Loss 0.943629472023856 0 NA NA prediction 0.887258944047711 Functional Loss - NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84035925 chr16:84035925 nonsynonymous SNV 0.056 2 21 hm7G_associated_SNPs_4506 0 0 0 0 1 NECAB2 chr16:84035923 3'AG 84035923 Downstream 3bp 4380 chr10 74666461 74666461 1 + G A GBM 74666461 + 74666441 74666481 41 GCCGTGTGCTAAGAAGTGATGGCAAGACTTGTGAAGGTGAG GCCGTGTGCTAAGAAGTGATAGCAAGACTTGTGAAGGTGAG Direct Loss 0.94362594083444 0 NA NA prediction 0.887251881668881 Functional Loss - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74666461 chr10:74666461 nonsynonymous SNV 0.979 5 21 hm7G_associated_SNPs_4507 0 0 0 1 1 OIT3 chr10:74666476 5'GT 74666476 Upstream 16bp 4381 chr22 19422334 19422334 1 + G C TGCT 19422334 + 19422314 19422354 41 AAGGAGCGCTTGAAAAGGAAGATCCGAAAACTGGAAAAGGC AAGGAGCGCTTGAAAAGGAACATCCGAAAACTGGAAAAGGC Direct Loss 0.943619757620594 0 NA NA prediction 0.887239515241188 Functional Loss - MRPL40 ENSG00000185608 CDS Human protein_coding chr22:19422334 chr22:19422334 nonsynonymous SNV 0.990 2 21 hm7G_associated_SNPs_4508 0 0 1 0 2 MRPL40 chr22:19422259 3'AG 19422259 Downstream 76bp 4382 chr22 19422334 19422334 1 + G C TGCT 19422334 + 19422314 19422354 41 AAGGAGCGCTTGAAAAGGAAGATCCGAAAACTGGAAAAGGC AAGGAGCGCTTGAAAAGGAACATCCGAAAACTGGAAAAGGC Direct Loss 0.943619757620594 0 NA NA prediction 0.887239515241188 Functional Loss - MRPL40 ENSG00000185608 CDS Human protein_coding chr22:19422334 chr22:19422334 nonsynonymous SNV 0.990 2 21 hm7G_associated_SNPs_4508 0 0 1 0 2 MRPL40 chr22:19422417 5'GT 19422417 Upstream 84bp 4383 chr12 85680735 85680735 1 + G T SARC 85680735 + 85680715 85680755 41 ACCTATGATATATCAGTTTTGCCAAGGACTGACAGCTACCC ACCTATGATATATCAGTTTTTCCAAGGACTGACAGCTACCC Direct Loss 0.94361737663684 0 NA NA prediction 0.887234753273681 Functional Loss - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85680735 chr12:85680735 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_4509 0 0 1 0 1 ALX1 chr12:85680759 5'GT 85680759 Upstream 25bp 4384 chr3 128780669 128780669 1 + G A SKCM 128780669 + 128780649 128780689 41 CCATGTACCTGCCGCGCCCTGGAAACCATGGGGCTGTGGGT CCATGTACCTGCCGCGCCCTAGAAACCATGGGGCTGTGGGT Direct Loss 0.94361391169434 0 NA NA prediction 0.88722782338868 Functional Loss - GP9 ENSG00000169704 CDS Human protein_coding chr3:128780669 chr3:128780669 synonymous SNV . 0 21 hm7G_associated_SNPs_4510 0 0 0 0 1 GP9 chr3:128780571 3'AG 128780571 Downstream 99bp 4385 chr12 75804241 75804241 1 + G C OV 75804241 + 75804221 75804261 41 ATGTAGCTTTATCACGGACTGCTAGAGCATGGGGAAAAAAA ATGTAGCTTTATCACGGACTCCTAGAGCATGGGGAAAAAAA Direct Loss 0.943609432212499 0 NA NA prediction 0.887218864424998 Functional Loss - GLIPR1L2 ENSG00000180481 CDS Human protein_coding chr12:75804241 chr12:75804241 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4511 0 0 0 0 1 GLIPR1L2 chr12:75804214 3'AG 75804214 Downstream 28bp 4386 chr20 31604871 31604871 1 + G A SARC 31604871 + 31604851 31604891 41 TGCCTGAGCATCTCCAACCTGGTGCAGGGTGTCAATGTCCA TGCCTGAGCATCTCCAACCTAGTGCAGGGTGTCAATGTCCA Direct Loss 0.94360891554754 0 NA NA prediction 0.88721783109508 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31604871 chr20:31604871 synonymous SNV . 0 21 hm7G_associated_SNPs_4512 0 0 1 0 2 BPIFB2 chr20:31604848 3'AG 31604848 Downstream 24bp 4387 chr20 31604871 31604871 1 + G A SARC 31604871 + 31604851 31604891 41 TGCCTGAGCATCTCCAACCTGGTGCAGGGTGTCAATGTCCA TGCCTGAGCATCTCCAACCTAGTGCAGGGTGTCAATGTCCA Direct Loss 0.94360891554754 0 NA NA prediction 0.88721783109508 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31604871 chr20:31604871 synonymous SNV . 0 21 hm7G_associated_SNPs_4512 0 0 1 0 2 BPIFB2 chr20:31604908 5'GT 31604908 Upstream 38bp 4388 chr7 102105605 102105605 1 + G A COAD 102105605 + 102105585 102105625 41 CTGGGGAAGATCCGGAGTCTGGAGTAAGAGCCGGGCAGCGG CTGGGGAAGATCCGGAGTCTAGAGTAAGAGCCGGGCAGCGG Direct Loss 0.943606831720953 0 NA NA prediction 0.887213663441905 Functional Loss - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102105605 chr7:102105605 synonymous SNV . 0 21 hm7G_associated_SNPs_4513 0 0 1 0 1 LRWD1 chr7:102105607 5'GT 102105607 Upstream 3bp 4389 chr16 29816305 29816305 1 + G A rs2229347 29816305 + 29816285 29816325 41 ATTGGCCCGAAGAAGGCCCAGCTAATCGTGGGCTGGCGGGA ATTGGCCCGAAGAAGGCCCAACTAATCGTGGGCTGGCGGGA Direct Loss 0.943605737546529 0 NA NA prediction 0.887211475093059 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29816305 chr16:29816305 synonymous SNV . 0 21 hm7G_associated_SNPs_4514 0 0 1 0 1 KIF22 chr16:29816347 5'GT 29816347 Upstream 43bp 4390 chr16 84034390 84034390 1 + G C rs200448915 84034390 + 84034370 84034410 41 TCTATGAGTTCTGGGAGACAGAGGAGGCGTGGAAGAGGTGA TCTATGAGTTCTGGGAGACACAGGAGGCGTGGAAGAGGTGA Direct Loss 0.943599405033576 0 NA NA prediction 0.887198810067151 Functional Loss - NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84034390 chr16:84034390 nonsynonymous SNV 0.934 2 21 hm7G_associated_SNPs_4515 0 0 0 0 2 NECAB2 chr16:84034329 3'AG 84034329 Downstream 62bp 4391 chr16 84034390 84034390 1 + G C rs200448915 84034390 + 84034370 84034410 41 TCTATGAGTTCTGGGAGACAGAGGAGGCGTGGAAGAGGTGA TCTATGAGTTCTGGGAGACACAGGAGGCGTGGAAGAGGTGA Direct Loss 0.943599405033576 0 NA NA prediction 0.887198810067151 Functional Loss - NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84034390 chr16:84034390 nonsynonymous SNV 0.934 2 21 hm7G_associated_SNPs_4515 0 0 0 0 2 NECAB2 chr16:84034406 5'GT 84034406 Upstream 17bp 4392 chr10 115481528 115481528 1 + G A rs115421189 115481528 + 115481508 115481548 41 TGTGCCAAGATGCAAGATCTGCTTAAAAAAGGTGAGTGCTG TGTGCCAAGATGCAAGATCTACTTAAAAAAGGTGAGTGCTG Direct Loss 0.943588302400858 0 NA NA prediction 0.887176604801715 Functional Loss - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115481528 chr10:115481528 synonymous SNV . 0 21 hm7G_associated_SNPs_4516 0 0 0 0 1 CASP7 chr10:115481538 5'GT 115481538 Upstream 11bp 4393 chr11 488603 488603 1 + G A CHOL 488603 + 488583 488623 41 ACCCTTGAGTGGCTGTCCCTGAAGACGTACAAGTGGCAGGG ACCCTTGAGTGGCTGTCCCTAAAGACGTACAAGTGGCAGGG Direct Loss 0.943576693198527 0 NA NA prediction 0.887153386397055 Functional Loss - PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:488603 chr11:488603 synonymous SNV . 0 21 hm7G_associated_SNPs_4517 0 0 1 0 2 PTDSS2 chr11:488529 3'AG 488529 Downstream 75bp 4394 chr11 488603 488603 1 + G A CHOL 488603 + 488583 488623 41 ACCCTTGAGTGGCTGTCCCTGAAGACGTACAAGTGGCAGGG ACCCTTGAGTGGCTGTCCCTAAAGACGTACAAGTGGCAGGG Direct Loss 0.943576693198527 0 NA NA prediction 0.887153386397055 Functional Loss - PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:488603 chr11:488603 synonymous SNV . 0 21 hm7G_associated_SNPs_4517 0 0 1 0 2 PTDSS2 chr11:488647 5'GT 488647 Upstream 45bp 4395 chr18 619337 619337 1 + G C BLCA 619337 + 619317 619357 41 ACCAATCTAATGAGCACCCTGAAGAAATGCAGAGAAGAAAA ACCAATCTAATGAGCACCCTCAAGAAATGCAGAGAAGAAAA Direct Loss 0.943565264202388 0 NA NA prediction 0.887130528404777 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:619337 chr18:619337 synonymous SNV . 0 21 hm7G_associated_SNPs_4518 0 0 0 0 1 CLUL1 chr18:619361 5'GT 619361 Upstream 25bp 4396 chr3 128976426 128976426 1 + G A LUSC 128976426 + 128976406 128976446 41 TCTCCCTTTGCCTACTGCATGATGATCCGGGTGGCCAGCAA TCTCCCTTTGCCTACTGCATAATGATCCGGGTGGCCAGCAA Direct Loss 0.94354801002067 0 NA NA prediction 0.887096020041341 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128976426 chr3:128976426 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4521 0 0 1 0 1 COPG1 chr3:128976470 5'GT 128976470 Upstream 45bp 4397 chr2 172928475 172928475 1 + G C PCPG 172928475 + 172928455 172928495 41 ACTATGTGACGACAGGCATTGTACCAGACTGGGGAGACAGC ACTATGTGACGACAGGCATTCTACCAGACTGGGGAGACAGC Direct Loss 0.943542448319367 0 NA NA prediction 0.887084896638733 Functional Loss - METAP1D ENSG00000172878 CDS Human protein_coding chr2:172928475 chr2:172928475 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_4522 0 0 1 0 1 METAP1D chr2:172928439 3'AG 172928439 Downstream 37bp 4398 chr22 31816285 31816285 1 + G A BLCA 31816285 + 31816265 31816305 41 TTGATTGTTCTGGATGTCCTGAAACCTTTGGGACATAAGAA TTGATTGTTCTGGATGTCCTAAAACCTTTGGGACATAAGAA Direct Loss 0.943524846956134 0 NA NA prediction 0.887049693912268 Functional Loss - DRG1 ENSG00000185721 CDS Human protein_coding chr22:31816285 chr22:31816285 synonymous SNV . 0 21 hm7G_associated_SNPs_4523 0 0 1 0 1 DRG1 chr22:31816242 3'AG 31816242 Downstream 44bp 4399 chr5 7892921 7892921 1 + G T SARC 7892921 + 7892901 7892941 41 ACTGCCACAACAGAGGTTCTGCGGAAGGGAGTATGTACAGG ACTGCCACAACAGAGGTTCTTCGGAAGGGAGTATGTACAGG Direct Loss 0.943523139321164 0 NA NA prediction 0.887046278642327 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7892921 chr5:7892921 synonymous SNV . 0 21 hm7G_associated_SNPs_4524 0 0 1 1 1 MTRR chr5:7892840 3'AG 7892840 Downstream 82bp 4400 chr20 61588147 61588147 1 + G A SARC 61588147 + 61588127 61588167 41 CAGGCATGGACGGGGACGCTGCTGCTGGGCACATGCCTTCT CAGGCATGGACGGGGACGCTACTGCTGGGCACATGCCTTCT Direct Loss 0.943522217395544 0 NA NA prediction 0.887044434791088 Functional Loss - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61588147 chr20:61588147 synonymous SNV . 0 21 hm7G_associated_SNPs_4525 0 0 1 0 1 SLC17A9 chr20:61588117 3'AG 61588117 Downstream 31bp 4401 chr2 102644743 102644743 1 + G A SKCM 102644743 + 102644723 102644763 41 CCACTTTCACTGGCCTTCTTGGTTTTGGGGGGAATATGGAT CCACTTTCACTGGCCTTCTTAGTTTTGGGGGGAATATGGAT Direct Loss 0.943517588566602 0 NA NA prediction 0.887035177133204 Functional Loss - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102644743 chr2:102644743 synonymous SNV . 0 21 hm7G_associated_SNPs_4526 0 0 0 0 1 IL1R2 chr2:102644688 3'AG 102644688 Downstream 56bp 4402 chr9 103278966 103278966 1 + G T LUSC 103278966 + 103278946 103278986 41 TTTTTAAACAGAAGAGGAAGGGTCAGGGGCAGAAGTTCACA TTTTTAAACAGAAGAGGAAGTGTCAGGGGCAGAAGTTCACA Direct Loss 0.943504481235132 0 NA NA prediction 0.887008962470263 Functional Loss - MSANTD3-TMEFF1;TMEFF1 ENSG00000241697;ENSG00000251349 CDS Human other chr9:103278966 chr9:103278966 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_4528 0 0 1 0 2 MSANTD3-TMEFF1;TMEFF1 chr9:103278957 3'AG 103278957 Downstream 10bp 4403 chr9 103278966 103278966 1 + G T LUSC 103278966 + 103278946 103278986 41 TTTTTAAACAGAAGAGGAAGGGTCAGGGGCAGAAGTTCACA TTTTTAAACAGAAGAGGAAGTGTCAGGGGCAGAAGTTCACA Direct Loss 0.943504481235132 0 NA NA prediction 0.887008962470263 Functional Loss - MSANTD3-TMEFF1;TMEFF1 ENSG00000241697;ENSG00000251349 CDS Human other chr9:103278966 chr9:103278966 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_4528 0 0 1 0 2 MSANTD3-TMEFF1;TMEFF1 chr9:103279053 5'GT 103279053 Upstream 88bp 4404 chr16 75690203 75690203 1 + G A LUSC 75690203 + 75690183 75690223 41 GAAACACAGCCTGATGAGGAGGAAGAAGAAGAAGAAGAAAA GAAACACAGCCTGATGAGGAAGAAGAAGAAGAAGAAGAAAA Direct Loss 0.943502785473301 0 NA NA prediction 0.887005570946601 Functional Loss - TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75690203 chr16:75690203 synonymous SNV . 0 21 hm7G_associated_SNPs_4530 0 0 1 0 1 TERF2IP chr16:75690105 3'AG 75690105 Downstream 99bp 4405 chr6 35705949 35705949 1 + G A UCEC 35705949 + 35705929 35705969 41 GTGTACTTGCTGGAGGCTGAGGTAAGGGAAGCAGGAGGTCC GTGTACTTGCTGGAGGCTGAAGTAAGGGAAGCAGGAGGTCC Direct Loss 0.943489761699844 0 NA NA prediction 0.886979523399688 Functional Loss - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35705949 chr6:35705949 synonymous SNV . 0 21 hm7G_associated_SNPs_4531 0 0 0 0 1 ARMC12 chr6:35705949 5'GT 35705949 Upstream 1bp 4406 chr1 100756986 100756986 1 + G C BLCA 100756986 + 100756966 100757006 41 TTATTGTGAAGAAATCAGAAGATGAAGAAGACGCCGCTAAA TTATTGTGAAGAAATCAGAACATGAAGAAGACGCCGCTAAA Direct Loss 0.943487904547274 0 NA NA prediction 0.886975809094548 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100756986 chr1:100756986 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4532 0 0 1 0 1 RTCA chr1:100756959 3'AG 100756959 Downstream 28bp 4407 chr11 1955173 1955173 1 + G A KIRC 1955173 + 1955153 1955193 41 GGCTGCAGGAGAAGCGCCGTGCAGAGAGAGCGGAGCAGCAG GGCTGCAGGAGAAGCGCCGTACAGAGAGAGCGGAGCAGCAG Direct Loss 0.943474361805264 0 NA NA prediction 0.886948723610528 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955173 chr11:1955173 nonsynonymous SNV 0.495 2 21 hm7G_associated_SNPs_4535 0 0 0 0 2 TNNT3 chr11:1955161 3'AG 1955161 Downstream 13bp 4408 chr11 1955173 1955173 1 + G A KIRC 1955173 + 1955153 1955193 41 GGCTGCAGGAGAAGCGCCGTGCAGAGAGAGCGGAGCAGCAG GGCTGCAGGAGAAGCGCCGTACAGAGAGAGCGGAGCAGCAG Direct Loss 0.943474361805264 0 NA NA prediction 0.886948723610528 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955173 chr11:1955173 nonsynonymous SNV 0.495 2 21 hm7G_associated_SNPs_4535 0 0 0 0 2 TNNT3 chr11:1955238 5'GT 1955238 Upstream 66bp 4409 chr1 151509271 151509271 1 + G A rs77669070 151509271 + 151509251 151509291 41 GAAGAGGAAATTGAGCGACTGGACGGCCTGAGGAAGAAGGC GAAGAGGAAATTGAGCGACTAGACGGCCTGAGGAAGAAGGC Direct Loss 0.943442303440589 0 NA NA prediction 0.886884606881178 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151509271 chr1:151509271 synonymous SNV . 0 21 hm7G_associated_SNPs_4538 0 0 0 0 2 CGN chr1:151509206 3'AG 151509206 Downstream 66bp 4410 chr1 151509271 151509271 1 + G A rs77669070 151509271 + 151509251 151509291 41 GAAGAGGAAATTGAGCGACTGGACGGCCTGAGGAAGAAGGC GAAGAGGAAATTGAGCGACTAGACGGCCTGAGGAAGAAGGC Direct Loss 0.943442303440589 0 NA NA prediction 0.886884606881178 Functional Loss - CGN ENSG00000143375 CDS Human protein_coding chr1:151509271 chr1:151509271 synonymous SNV . 0 21 hm7G_associated_SNPs_4538 0 0 0 0 2 CGN chr1:151509369 5'GT 151509369 Upstream 99bp 4411 chr3 121591409 121591409 1 + G T COAD 121591409 + 121591389 121591429 41 AAGGCAGAAGCTAGTCTAATGGACCAGATGAGTAGTTGTGA AAGGCAGAAGCTAGTCTAATTGACCAGATGAGTAGTTGTGA Direct Loss 0.943439083631354 0 NA NA prediction 0.886878167262708 Functional Loss - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121591409 chr3:121591409 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4539 0 0 0 0 1 EAF2 chr3:121591384 3'AG 121591384 Downstream 26bp 4412 chr12 118829054 118829054 1 + G A STAD 118829054 + 118829034 118829074 41 AAGAAAAGAAGAAAATGATTGAAAATGAAAAGCTGACAATG AAGAAAAGAAGAAAATGATTAAAAATGAAAAGCTGACAATG Direct Loss 0.943431646873428 0 NA NA prediction 0.886863293746856 Functional Loss - SUDS3 ENSG00000111707 CDS Human protein_coding chr12:118829054 chr12:118829054 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_4541 0 0 1 0 1 SUDS3 chr12:118829087 5'GT 118829087 Upstream 34bp 4413 chr2 242644111 242644111 1 + G T BLCA 242644111 + 242644091 242644131 41 CTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAG CTTCAGAGGAACTTCCAGCTTATGCGAGAGCTGGACCAGAG Direct Loss 0.94342232700279 0 NA NA prediction 0.886844654005581 Functional Loss - ING5 ENSG00000168395 CDS Human protein_coding chr2:242644111 chr2:242644111 synonymous SNV . 0 21 hm7G_associated_SNPs_4542 0 0 1 0 2 ING5 chr2:242644068 3'AG 242644068 Downstream 44bp 4414 chr2 242644111 242644111 1 + G T BLCA 242644111 + 242644091 242644131 41 CTTCAGAGGAACTTCCAGCTGATGCGAGAGCTGGACCAGAG CTTCAGAGGAACTTCCAGCTTATGCGAGAGCTGGACCAGAG Direct Loss 0.94342232700279 0 NA NA prediction 0.886844654005581 Functional Loss - ING5 ENSG00000168395 CDS Human protein_coding chr2:242644111 chr2:242644111 synonymous SNV . 0 21 hm7G_associated_SNPs_4542 0 0 1 0 2 ING5 chr2:242644139 5'GT 242644139 Upstream 29bp 4415 chr15 75122542 75122542 1 + G A SKCM 75122542 + 75122522 75122562 41 CCCCGGGAGCTGGCCAAGATGATCGAGGAGGACACAGAGGA CCCCGGGAGCTGGCCAAGATAATCGAGGAGGACACAGAGGA Direct Loss 0.94342169520441 0 NA NA prediction 0.88684339040882 Functional Loss - CPLX3 ENSG00000213578 CDS Human protein_coding chr15:75122542 chr15:75122542 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4543 0 0 0 0 1 CPLX3 chr15:75122471 3'AG 75122471 Downstream 72bp 4416 chr1 215759998 215759998 1 + G T SKCM 215759998 + 215759978 215760018 41 GTAGCATCATCTTGTGGAGTGTTCAGGATGGGGGAAGTGGA GTAGCATCATCTTGTGGAGTTTTCAGGATGGGGGAAGTGGA Direct Loss 0.94341705708743 0 NA NA prediction 0.88683411417486 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215759998 chr1:215759998 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_4545 0 0 1 0 1 KCTD3 chr1:215760028 5'GT 215760028 Upstream 31bp 4417 chr15 78807408 78807408 1 + G T UCEC 78807408 + 78807388 78807428 41 TCAGCCCCCAGCTATTGTATGAAATTGGAAAACTAGCTGCC TCAGCCCCCAGCTATTGTATTAAATTGGAAAACTAGCTGCC Direct Loss 0.94340706289116 0 NA NA prediction 0.886814125782319 Functional Loss - HYKK ENSG00000188266 CDS Human protein_coding chr15:78807408 chr15:78807408 stopgain 0.014 0 21 hm7G_associated_SNPs_4546 0 0 0 0 2 HYKK chr15:78807310 3'AG 78807310 Downstream 99bp 4418 chr15 78807408 78807408 1 + G T UCEC 78807408 + 78807388 78807428 41 TCAGCCCCCAGCTATTGTATGAAATTGGAAAACTAGCTGCC TCAGCCCCCAGCTATTGTATTAAATTGGAAAACTAGCTGCC Direct Loss 0.94340706289116 0 NA NA prediction 0.886814125782319 Functional Loss - HYKK ENSG00000188266 CDS Human protein_coding chr15:78807408 chr15:78807408 stopgain 0.014 0 21 hm7G_associated_SNPs_4546 0 0 0 0 2 HYKK chr15:78807449 5'GT 78807449 Upstream 42bp 4419 chr5 3601189 3601189 1 + G A rs561749962 3601189 + 3601169 3601209 41 TTACTTTTGCGGGGGGGAGGGGGGAGGAGTTGGGGAGGGAG TTACTTTTGCGGGGGGGAGGAGGGAGGAGTTGGGGAGGGAG Direct Loss 0.943400637833967 0 NA NA prediction 0.886801275667933 Functional Loss - IRX1 ENSG00000170549 UTR3 Human protein_coding chr5:3601189 chr5:3601189 . . 0 21 hm7G_associated_SNPs_4548 0 0 0 0 1 IRX1 chr5:3601097 3'AG 3601097 Downstream 93bp 4420 chr19 14071180 14071180 1 + G C GBM 14071180 + 14071160 14071200 41 ACAGTCAGTGTAGGCGACCTGACTGAGGTCAAAGGGCAGAC ACAGTCAGTGTAGGCGACCTCACTGAGGTCAAAGGGCAGAC Direct Loss 0.943387280220929 0 NA NA prediction 0.886774560441859 Functional Loss - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14071180 chr19:14071180 synonymous SNV . 0 21 hm7G_associated_SNPs_4550 0 0 1 1 2 DCAF15 chr19:14071099 3'AG 14071099 Downstream 82bp 4421 chr19 14071180 14071180 1 + G C GBM 14071180 + 14071160 14071200 41 ACAGTCAGTGTAGGCGACCTGACTGAGGTCAAAGGGCAGAC ACAGTCAGTGTAGGCGACCTCACTGAGGTCAAAGGGCAGAC Direct Loss 0.943387280220929 0 NA NA prediction 0.886774560441859 Functional Loss - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14071180 chr19:14071180 synonymous SNV . 0 21 hm7G_associated_SNPs_4550 0 0 1 1 2 DCAF15 chr19:14071203 5'GT 14071203 Upstream 24bp 4422 chr10 121663686 121663686 1 + G A UCEC 121663686 + 121663666 121663706 41 AATAAGGAAGGCTGCCTACTGGGAAGAGGAGCCAGCCGAAG AATAAGGAAGGCTGCCTACTAGGAAGAGGAGCCAGCCGAAG Direct Loss 0.943386879326232 0 NA NA prediction 0.886773758652464 Functional Loss - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121663686 chr10:121663686 stopgain 0.986 1 21 hm7G_associated_SNPs_4551 0 0 1 0 1 SEC23IP chr10:121663596 3'AG 121663596 Downstream 91bp 4423 chr9 100315615 100315615 1 + G A CESC 100315615 + 100315595 100315635 41 GATCCTGTGCTGGAAAGTGTGACGCTGGAACCGGAGCTGGA GATCCTGTGCTGGAAAGTGTAACGCTGGAACCGGAGCTGGA Direct Loss 0.943382547540207 0 NA NA prediction 0.886765095080413 Functional Loss - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100315615 chr9:100315615 synonymous SNV . 0 21 hm7G_associated_SNPs_4552 0 0 1 0 2 TMOD1 chr9:100315563 3'AG 100315563 Downstream 53bp 4424 chr9 100315615 100315615 1 + G A CESC 100315615 + 100315595 100315635 41 GATCCTGTGCTGGAAAGTGTGACGCTGGAACCGGAGCTGGA GATCCTGTGCTGGAAAGTGTAACGCTGGAACCGGAGCTGGA Direct Loss 0.943382547540207 0 NA NA prediction 0.886765095080413 Functional Loss - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100315615 chr9:100315615 synonymous SNV . 0 21 hm7G_associated_SNPs_4552 0 0 1 0 2 TMOD1 chr9:100315682 5'GT 100315682 Upstream 68bp 4425 chr15 83658656 83658656 1 + G T UCEC 83658656 + 83658636 83658676 41 GCAAGACAACAGACAGTTCAGAGGCAGGGACAACAGATGGG GCAAGACAACAGACAGTTCATAGGCAGGGACAACAGATGGG Direct Loss 0.943381863087757 0 NA NA prediction 0.886763726175515 Functional Loss - FAM103A1 ENSG00000169612 CDS Human protein_coding chr15:83658656 chr15:83658656 nonsynonymous SNV 0.934 2 21 hm7G_associated_SNPs_4553 0 0 0 0 1 FAM103A1 chr15:83658633 3'AG 83658633 Downstream 24bp 4426 chrX 79277894 79277894 1 + G T UCEC 79277894 + 79277874 79277914 41 CGGGAGAAAAAGGGCGGAGAGGAAGAGGAGGAGAGAAGGAG CGGGAGAAAAAGGGCGGAGATGAAGAGGAGGAGAGAAGGAG Direct Loss 0.943381757618677 0 NA NA prediction 0.886763515237353 Functional Loss - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277894 chrX:79277894 nonsynonymous SNV 0.958 1 21 hm7G_associated_SNPs_4554 0 0 0 0 1 TBX22 chrX:79277943 5'GT 79277943 Upstream 50bp 4427 chr22 37272122 37272122 1 + G T STAD 37272122 + 37272102 37272142 41 ACTCCCCTATTGAAAGACCTGCTGGAGCTCACAAGGTGAGG ACTCCCCTATTGAAAGACCTTCTGGAGCTCACAAGGTGAGG Direct Loss 0.943353075483703 0 NA NA prediction 0.886706150967406 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37272122 chr22:37272122 synonymous SNV . 0 21 hm7G_associated_SNPs_4556 0 0 0 1 2 NCF4 chr22:37272071 3'AG 37272071 Downstream 52bp 4428 chr22 37272122 37272122 1 + G T STAD 37272122 + 37272102 37272142 41 ACTCCCCTATTGAAAGACCTGCTGGAGCTCACAAGGTGAGG ACTCCCCTATTGAAAGACCTTCTGGAGCTCACAAGGTGAGG Direct Loss 0.943353075483703 0 NA NA prediction 0.886706150967406 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37272122 chr22:37272122 synonymous SNV . 0 21 hm7G_associated_SNPs_4556 0 0 0 1 2 NCF4 chr22:37272136 5'GT 37272136 Upstream 15bp 4429 chr20 32251364 32251364 1 + G A SKCM 32251364 + 32251344 32251384 41 ATCGTGCTGATTCTCCCCCTGGACAAGCGGCAGCCGCTGGC ATCGTGCTGATTCTCCCCCTAGACAAGCGGCAGCCGCTGGC Direct Loss 0.943352650729867 0 NA NA prediction 0.886705301459734 Functional Loss - C20orf144 ENSG00000149609 CDS Human protein_coding chr20:32251364 chr20:32251364 synonymous SNV . 0 21 hm7G_associated_SNPs_4557 0 0 0 0 1 C20orf144 chr20:32251338 3'AG 32251338 Downstream 27bp 4430 chr1 100127916 100127916 1 + G A SKCM 100127916 + 100127896 100127936 41 GAAATCTCACAGAAGCGTCTGAAAATAGAGGAAGACAAACT GAAATCTCACAGAAGCGTCTAAAAATAGAGGAAGACAAACT Direct Loss 0.943352144873556 0 NA NA prediction 0.886704289747112 Functional Loss - PALMD ENSG00000099260 CDS Human protein_coding chr1:100127916 chr1:100127916 synonymous SNV . 0 21 hm7G_associated_SNPs_4558 0 0 0 0 2 PALMD chr1:100127875 3'AG 100127875 Downstream 42bp 4431 chr1 100127916 100127916 1 + G A SKCM 100127916 + 100127896 100127936 41 GAAATCTCACAGAAGCGTCTGAAAATAGAGGAAGACAAACT GAAATCTCACAGAAGCGTCTAAAAATAGAGGAAGACAAACT Direct Loss 0.943352144873556 0 NA NA prediction 0.886704289747112 Functional Loss - PALMD ENSG00000099260 CDS Human protein_coding chr1:100127916 chr1:100127916 synonymous SNV . 0 21 hm7G_associated_SNPs_4558 0 0 0 0 2 PALMD chr1:100127955 5'GT 100127955 Upstream 40bp 4432 chr7 16816732 16816732 1 + G T LUAD 16816732 + 16816712 16816752 41 TCTTGCGCTTGTTTAGCCCTGAACCAGGAGCAACAGGTAAG TCTTGCGCTTGTTTAGCCCTTAACCAGGAGCAACAGGTAAG Direct Loss 0.943336437671591 0 NA NA prediction 0.886672875343183 Functional Loss - TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16816732 chr7:16816732 synonymous SNV . 0 21 hm7G_associated_SNPs_4560 0 0 1 0 2 TSPAN13 chr7:16816667 3'AG 16816667 Downstream 66bp 4433 chr7 16816732 16816732 1 + G T LUAD 16816732 + 16816712 16816752 41 TCTTGCGCTTGTTTAGCCCTGAACCAGGAGCAACAGGTAAG TCTTGCGCTTGTTTAGCCCTTAACCAGGAGCAACAGGTAAG Direct Loss 0.943336437671591 0 NA NA prediction 0.886672875343183 Functional Loss - TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16816732 chr7:16816732 synonymous SNV . 0 21 hm7G_associated_SNPs_4560 0 0 1 0 2 TSPAN13 chr7:16816747 5'GT 16816747 Upstream 16bp 4434 chr2 37475355 37475355 1 + G T BLCA 37475355 + 37475335 37475375 41 GATATGTTAATGAATCCAAAGAAGATGGGAGAGAGATTTAA GATATGTTAATGAATCCAAATAAGATGGGAGAGAGATTTAA Direct Loss 0.943334534791076 0 NA NA prediction 0.886669069582152 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37475355 chr2:37475355 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_4561 0 0 1 3 1 NDUFAF7 chr2:37475278 3'AG 37475278 Downstream 78bp 4435 chr3 33161904 33161904 1 + G T UCEC 33161904 + 33161884 33161924 41 AAGCATCCTGATGACGAAATGATGAAGAGGAACATGGCATA AAGCATCCTGATGACGAAATTATGAAGAGGAACATGGCATA Direct Loss 0.943326808814256 0 NA NA prediction 0.886653617628512 Functional Loss - CRTAP ENSG00000170275 CDS Human protein_coding chr3:33161904 chr3:33161904 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_4562 0 0 1 0 2 CRTAP chr3:33161836 3'AG 33161836 Downstream 69bp 4436 chr3 33161904 33161904 1 + G T UCEC 33161904 + 33161884 33161924 41 AAGCATCCTGATGACGAAATGATGAAGAGGAACATGGCATA AAGCATCCTGATGACGAAATTATGAAGAGGAACATGGCATA Direct Loss 0.943326808814256 0 NA NA prediction 0.886653617628512 Functional Loss - CRTAP ENSG00000170275 CDS Human protein_coding chr3:33161904 chr3:33161904 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_4562 0 0 1 0 2 CRTAP chr3:33161985 5'GT 33161985 Upstream 82bp 4437 chr10 112262553 112262553 1 + G A UCEC 112262553 + 112262533 112262573 41 CCATTTCACAAGAGAAGATTGAGAGTGAGAGAGCCCTCATC CCATTTCACAAGAGAAGATTAAGAGTGAGAGAGCCCTCATC Direct Loss 0.943316821639678 0 NA NA prediction 0.886633643279357 Functional Loss - DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112262553 chr10:112262553 nonsynonymous SNV 0.680 1 21 hm7G_associated_SNPs_4563 0 0 1 0 2 DUSP5 chr10:112262479 3'AG 112262479 Downstream 75bp 4438 chr10 112262553 112262553 1 + G A UCEC 112262553 + 112262533 112262573 41 CCATTTCACAAGAGAAGATTGAGAGTGAGAGAGCCCTCATC CCATTTCACAAGAGAAGATTAAGAGTGAGAGAGCCCTCATC Direct Loss 0.943316821639678 0 NA NA prediction 0.886633643279357 Functional Loss - DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112262553 chr10:112262553 nonsynonymous SNV 0.680 1 21 hm7G_associated_SNPs_4563 0 0 1 0 2 DUSP5 chr10:112262627 5'GT 112262627 Upstream 75bp 4439 chr1 46035569 46035569 1 + G A GBM 46035569 + 46035549 46035589 41 GTCTCTCTTTCCAGGTGGATGGGAAGAGAGTCCCAAGGGAT GTCTCTCTTTCCAGGTGGATAGGAAGAGAGTCCCAAGGGAT Direct Loss 0.9433018899593 0 NA NA prediction 0.8866037799186 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46035569 chr1:46035569 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4564 0 0 1 0 1 AKR1A1 chr1:46035563 3'AG 46035563 Downstream 7bp 4440 chr18 61621669 61621669 1 + G A SKCM 61621669 + 61621649 61621689 41 GTTTTAGTAAAATCGGAGGTGAAGATGGAGATATTCATCGA GTTTTAGTAAAATCGGAGGTAAAGATGGAGATATTCATCGA Direct Loss 0.943299755165926 0 NA NA prediction 0.886599510331852 Functional Loss - HMSD ENSG00000221887 CDS Human protein_coding chr18:61621669 chr18:61621669 nonsynonymous SNV 0.012 1 21 hm7G_associated_SNPs_4565 0 0 0 0 1 HMSD chr18:61621642 3'AG 61621642 Downstream 28bp 4441 chr12 6424739 6424739 1 + G A COAD 6424739 + 6424719 6424759 41 GGAGATGAGCCAGGAGCTCTGCCACCAACAGGAGGCCCTGT GGAGATGAGCCAGGAGCTCTACCACCAACAGGAGGCCCTGT Direct Loss 0.943290490980153 0 NA NA prediction 0.886580981960305 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6424739 chr12:6424739 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_4567 0 0 0 0 2 PLEKHG6 chr12:6424720 3'AG 6424720 Downstream 20bp 4442 chr12 6424739 6424739 1 + G A COAD 6424739 + 6424719 6424759 41 GGAGATGAGCCAGGAGCTCTGCCACCAACAGGAGGCCCTGT GGAGATGAGCCAGGAGCTCTACCACCAACAGGAGGCCCTGT Direct Loss 0.943290490980153 0 NA NA prediction 0.886580981960305 Functional Loss - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6424739 chr12:6424739 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_4567 0 0 0 0 2 PLEKHG6 chr12:6424815 5'GT 6424815 Upstream 77bp 4443 chr6 52548949 52548949 1 + G C LGG 52548949 + 52548929 52548969 41 AAAATAATGCCTGCTGGTTTGGTTGCAGGTTTAAGGTAAGT AAAATAATGCCTGCTGGTTTCGTTGCAGGTTTAAGGTAAGT Direct Loss 0.943284252074458 0 NA NA prediction 0.886568504148917 Functional Loss - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52548949 chr6:52548949 nonsynonymous SNV 0.957 0 21 hm7G_associated_SNPs_4568 0 0 1 0 2 TMEM14A chr6:52548876 3'AG 52548876 Downstream 74bp 4444 chr6 52548949 52548949 1 + G C LGG 52548949 + 52548929 52548969 41 AAAATAATGCCTGCTGGTTTGGTTGCAGGTTTAAGGTAAGT AAAATAATGCCTGCTGGTTTCGTTGCAGGTTTAAGGTAAGT Direct Loss 0.943284252074458 0 NA NA prediction 0.886568504148917 Functional Loss - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52548949 chr6:52548949 nonsynonymous SNV 0.957 0 21 hm7G_associated_SNPs_4568 0 0 1 0 2 TMEM14A chr6:52548963 5'GT 52548963 Upstream 15bp 4445 chr17 40001900 40001900 1 + G A UCEC 40001900 + 40001880 40001920 41 GCTACGTGCGTCTAAACACTGCTGAACGTTATGAGCCAGAG GCTACGTGCGTCTAAACACTACTGAACGTTATGAGCCAGAG Direct Loss 0.943281243472975 0 NA NA prediction 0.886562486945949 Functional Loss - KLHL10 ENSG00000161594 CDS Human protein_coding chr17:40001900 chr17:40001900 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4569 0 0 0 0 1 KLHL10 chr17:40001995 5'GT 40001995 Upstream 96bp 4446 chr15 74623086 74623086 1 + G A LGG 74623086 + 74623066 74623106 41 CAGCATTTGCAGAATGAGCTGATTCGAGTGAGCTGGGGCTT CAGCATTTGCAGAATGAGCTAATTCGAGTGAGCTGGGGCTT Direct Loss 0.943278019598405 0 NA NA prediction 0.88655603919681 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74623086 chr15:74623086 synonymous SNV . 0 21 hm7G_associated_SNPs_4570 0 0 0 0 1 CCDC33 chr15:74623092 5'GT 74623092 Upstream 7bp 4447 chr9 35751361 35751361 1 + G C HNSC 35751361 + 35751341 35751381 41 AGAAAGATTCATGGCTAGCTGAGCTGGCTGGGGAACGCCTA AGAAAGATTCATGGCTAGCTCAGCTGGCTGGGGAACGCCTA Direct Loss 0.943274530674075 0 NA NA prediction 0.88654906134815 Functional Loss - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35751361 chr9:35751361 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_4571 0 0 1 0 2 RGP1 chr9:35751263 3'AG 35751263 Downstream 99bp 4448 chr9 35751361 35751361 1 + G C HNSC 35751361 + 35751341 35751381 41 AGAAAGATTCATGGCTAGCTGAGCTGGCTGGGGAACGCCTA AGAAAGATTCATGGCTAGCTCAGCTGGCTGGGGAACGCCTA Direct Loss 0.943274530674075 0 NA NA prediction 0.88654906134815 Functional Loss - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35751361 chr9:35751361 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_4571 0 0 1 0 2 RGP1 chr9:35751409 5'GT 35751409 Upstream 49bp 4449 chr2 24244608 24244608 1 + G T STAD 24244608 + 24244588 24244628 41 TAGGGGTGAAGGAGCGGCCAGGTATGGGGTTTGGTGAGGAG TAGGGGTGAAGGAGCGGCCATGTATGGGGTTTGGTGAGGAG Direct Loss 0.943264706839446 0 NA NA prediction 0.886529413678892 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24244608 chr2:24244608 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_4572 0 0 0 0 2 MFSD2B chr2:24244518 3'AG 24244518 Downstream 91bp 4450 chr2 24244608 24244608 1 + G T STAD 24244608 + 24244588 24244628 41 TAGGGGTGAAGGAGCGGCCAGGTATGGGGTTTGGTGAGGAG TAGGGGTGAAGGAGCGGCCATGTATGGGGTTTGGTGAGGAG Direct Loss 0.943264706839446 0 NA NA prediction 0.886529413678892 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24244608 chr2:24244608 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_4572 0 0 0 0 2 MFSD2B chr2:24244608 5'GT 24244608 Upstream 1bp 4451 chr15 101440908 101440908 1 + G A UCEC 101440908 + 101440888 101440928 41 TCAGGCGGAGCGTGGAGTATGCCAAGAAACGGCCCGTGGGA TCAGGCGGAGCGTGGAGTATACCAAGAAACGGCCCGTGGGA Direct Loss 0.943234826812235 0 NA NA prediction 0.886469653624469 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101440908 chr15:101440908 nonsynonymous SNV 0.534 3 21 hm7G_associated_SNPs_4574 0 0 0 0 1 ALDH1A3 chr15:101440964 5'GT 101440964 Upstream 57bp 4452 chr9 131048293 131048293 1 + G T UCEC 131048293 + 131048273 131048313 41 GACATCAAGGATGTGGGGCAGATGCTGATGGGCAAACTAGG GACATCAAGGATGTGGGGCATATGCTGATGGGCAAACTAGG Direct Loss 0.943226450466326 0 NA NA prediction 0.886452900932652 Functional Loss - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131048293 chr9:131048293 nonsynonymous SNV 0.975 4 21 hm7G_associated_SNPs_4576 0 0 1 0 2 SWI5 chr9:131048218 3'AG 131048218 Downstream 76bp 4453 chr9 131048293 131048293 1 + G T UCEC 131048293 + 131048273 131048313 41 GACATCAAGGATGTGGGGCAGATGCTGATGGGCAAACTAGG GACATCAAGGATGTGGGGCATATGCTGATGGGCAAACTAGG Direct Loss 0.943226450466326 0 NA NA prediction 0.886452900932652 Functional Loss - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131048293 chr9:131048293 nonsynonymous SNV 0.975 4 21 hm7G_associated_SNPs_4576 0 0 1 0 2 SWI5 chr9:131048312 5'GT 131048312 Upstream 20bp 4454 chr3 50229219 50229219 1 + G A SKCM 50229219 + 50229199 50229239 41 AGCTGGAAAAGAAGCTGAAAGAGGACGCTGAGAAGGATGCT AGCTGGAAAAGAAGCTGAAAAAGGACGCTGAGAAGGATGCT Direct Loss 0.943226248790563 0 NA NA prediction 0.886452497581126 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50229219 chr3:50229219 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_4577 0 0 0 0 1 GNAT1 chr3:50229264 5'GT 50229264 Upstream 46bp 4455 chr19 36365690 36365690 1 + G C CESC 36365690 + 36365670 36365710 41 CGCTACCTGCGTGCGGAGCAGAAGGAACAGAGGCACACGCT CGCTACCTGCGTGCGGAGCACAAGGAACAGAGGCACACGCT Direct Loss 0.943213387434851 0 NA NA prediction 0.886426774869701 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36365690 chr19:36365690 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_4578 0 0 0 0 2 APLP1 chr19:36365643 3'AG 36365643 Downstream 48bp 4456 chr19 36365690 36365690 1 + G C CESC 36365690 + 36365670 36365710 41 CGCTACCTGCGTGCGGAGCAGAAGGAACAGAGGCACACGCT CGCTACCTGCGTGCGGAGCACAAGGAACAGAGGCACACGCT Direct Loss 0.943213387434851 0 NA NA prediction 0.886426774869701 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36365690 chr19:36365690 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_4578 0 0 0 0 2 APLP1 chr19:36365771 5'GT 36365771 Upstream 82bp 4457 chr20 55059238 55059238 1 + G A STAD 55059238 + 55059218 55059258 41 AGAGATAAAAGCGGAAGTTTGCCACACGGTGAGTTCCTGAC AGAGATAAAAGCGGAAGTTTACCACACGGTGAGTTCCTGAC Direct Loss 0.943193667587661 0 NA NA prediction 0.886387335175322 Functional Loss - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55059238 chr20:55059238 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4581 0 0 1 0 2 RTFDC1 chr20:55059167 3'AG 55059167 Downstream 72bp 4458 chr20 55059238 55059238 1 + G A STAD 55059238 + 55059218 55059258 41 AGAGATAAAAGCGGAAGTTTGCCACACGGTGAGTTCCTGAC AGAGATAAAAGCGGAAGTTTACCACACGGTGAGTTCCTGAC Direct Loss 0.943193667587661 0 NA NA prediction 0.886387335175322 Functional Loss - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55059238 chr20:55059238 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4581 0 0 1 0 2 RTFDC1 chr20:55059245 5'GT 55059245 Upstream 8bp 4459 chr10 118318717 118318717 1 + G A OV 118318717 + 118318697 118318737 41 GCCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAA GCCCACAGATGGGTCACTATACTGATAGATATCCTGGGAAA Direct Loss 0.943191786497636 0 NA NA prediction 0.886383572995272 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318717 chr10:118318717 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_4582 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 52bp 4460 chr10 118318717 118318717 1 + G A OV 118318717 + 118318697 118318737 41 GCCCACAGATGGGTCACTATGCTGATAGATATCCTGGGAAA GCCCACAGATGGGTCACTATACTGATAGATATCCTGGGAAA Direct Loss 0.943191786497636 0 NA NA prediction 0.886383572995272 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318717 chr10:118318717 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_4582 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 79bp 4461 chr3 149375066 149375066 1 + G T SARC 149375066 + 149375046 149375086 41 TTGCTGCCCAGGCGGCGGGAGCGGAGGGGGCGCCGAGGCCG TTGCTGCCCAGGCGGCGGGATCGGAGGGGGCGCCGAGGCCG Direct Loss 0.943191581591865 0 NA NA prediction 0.88638316318373 Functional Loss - WWTR1 ENSG00000018408 CDS Human antisense chr3:149375066 chr3:149375066 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_4583 0 0 0 0 1 WWTR1 chr3:149375109 5'GT 149375109 Upstream 44bp 4462 chr4 164436591 164436591 1 + G A rs544371708 164436591 + 164436571 164436611 41 ACGATGGAGCGGGAGCGACAGCAGTTTGAGGGATATGGCCT ACGATGGAGCGGGAGCGACAACAGTTTGAGGGATATGGCCT Direct Loss 0.943180150536982 0 NA NA prediction 0.886360301073963 Functional Loss - TMA16 ENSG00000198498 CDS Human protein_coding chr4:164436591 chr4:164436591 synonymous SNV . 0 21 hm7G_associated_SNPs_4585 0 0 1 0 1 TMA16 chr4:164436613 5'GT 164436613 Upstream 23bp 4463 chr3 9803370 9803370 1 - C G CESC 9803370 - 9803350 9803390 41 TCCGACTTTGGCCTCTCCAAGATGGAGGACCCGGGCAGTGT TCCGACTTTGGCCTCTCCAACATGGAGGACCCGGGCAGTGT Direct Loss 0.943178380229913 0 NA NA prediction 0.886356760459825 Functional Loss - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803370 chr3:9803370 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4586 0 0 1 0 2 CAMK1 chr3:9803315 5'GT 9803315 Upstream 56bp 4464 chr3 9803370 9803370 1 - C G CESC 9803370 - 9803350 9803390 41 TCCGACTTTGGCCTCTCCAAGATGGAGGACCCGGGCAGTGT TCCGACTTTGGCCTCTCCAACATGGAGGACCCGGGCAGTGT Direct Loss 0.943178380229913 0 NA NA prediction 0.886356760459825 Functional Loss - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803370 chr3:9803370 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4586 0 0 1 0 2 CAMK1 chr3:9803441 3'AG 9803441 Downstream 72bp 4465 chr19 6743520 6743520 1 + G C CESC 6743520 + 6743500 6743540 41 CACAGAGTAAGCGTAAATTTGAGCGGGACTGCCGGGAGGCA CACAGAGTAAGCGTAAATTTCAGCGGGACTGCCGGGAGGCA Direct Loss 0.943169368342932 0 NA NA prediction 0.886338736685865 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6743520 chr19:6743520 nonsynonymous SNV 0.990 2 21 hm7G_associated_SNPs_4588 0 0 1 0 1 TRIP10 chr19:6743609 5'GT 6743609 Upstream 90bp 4466 chr16 28600485 28600485 1 + G C HNSC 28600485 + 28600465 28600505 41 TGTTGGAAGAGAGGCGGATTGGTGAGTGGGAGAGAACATGC TGTTGGAAGAGAGGCGGATTCGTGAGTGGGAGAGAACATGC Direct Loss 0.943169062058268 0 NA NA prediction 0.886338124116536 Functional Loss - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28600485 chr16:28600485 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_4589 0 0 0 0 2 SGF29 chr16:28600421 3'AG 28600421 Downstream 65bp 4467 chr16 28600485 28600485 1 + G C HNSC 28600485 + 28600465 28600505 41 TGTTGGAAGAGAGGCGGATTGGTGAGTGGGAGAGAACATGC TGTTGGAAGAGAGGCGGATTCGTGAGTGGGAGAGAACATGC Direct Loss 0.943169062058268 0 NA NA prediction 0.886338124116536 Functional Loss - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28600485 chr16:28600485 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_4589 0 0 0 0 2 SGF29 chr16:28600485 5'GT 28600485 Upstream 1bp 4468 chr1 150967131 150967131 1 + G C BLCA 150967131 + 150967111 150967151 41 ACCTTCTGAGTATCAGAGCTGAGTTCAGGAAGAAATTTGGG ACCTTCTGAGTATCAGAGCTCAGTTCAGGAAGAAATTTGGG Direct Loss 0.943159355524825 0 NA NA prediction 0.886318711049651 Functional Loss - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150967131 chr1:150967131 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_4591 0 0 0 0 2 ANXA9 chr1:150967053 3'AG 150967053 Downstream 79bp 4469 chr1 150967131 150967131 1 + G C BLCA 150967131 + 150967111 150967151 41 ACCTTCTGAGTATCAGAGCTGAGTTCAGGAAGAAATTTGGG ACCTTCTGAGTATCAGAGCTCAGTTCAGGAAGAAATTTGGG Direct Loss 0.943159355524825 0 NA NA prediction 0.886318711049651 Functional Loss - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150967131 chr1:150967131 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_4591 0 0 0 0 2 ANXA9 chr1:150967175 5'GT 150967175 Upstream 45bp 4470 chr12 69653262 69653262 1 + G T LUAD 69653262 + 69653242 69653282 41 GCTGAATTTGAAGAAATCATGAATAGAAATAGGGCAATCTC GCTGAATTTGAAGAAATCATTAATAGAAATAGGGCAATCTC Direct Loss 0.943146525227325 0 NA NA prediction 0.886293050454651 Functional Loss - CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69653262 chr12:69653262 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4592 0 0 1 0 2 CPSF6 chr12:69653208 3'AG 69653208 Downstream 55bp 4471 chr12 69653262 69653262 1 + G T LUAD 69653262 + 69653242 69653282 41 GCTGAATTTGAAGAAATCATGAATAGAAATAGGGCAATCTC GCTGAATTTGAAGAAATCATTAATAGAAATAGGGCAATCTC Direct Loss 0.943146525227325 0 NA NA prediction 0.886293050454651 Functional Loss - CPSF6 ENSG00000111605 CDS Human protein_coding chr12:69653262 chr12:69653262 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4592 0 0 1 0 2 CPSF6 chr12:69653323 5'GT 69653323 Upstream 62bp 4472 chr14 36300627 36300627 1 + G T UCEC 36300627 + 36300607 36300647 41 TATTAACAGAAATGGATGATGAAGACTGTGAAAGAAGAAGA TATTAACAGAAATGGATGATTAAGACTGTGAAAGAAGAAGA Direct Loss 0.943144707095475 0 NA NA prediction 0.88628941419095 Functional Loss - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36300627 chr14:36300627 stopgain 1.000 1 21 hm7G_associated_SNPs_4593 0 0 1 0 2 BRMS1L chr14:36300616 3'AG 36300616 Downstream 12bp 4473 chr14 36300627 36300627 1 + G T UCEC 36300627 + 36300607 36300647 41 TATTAACAGAAATGGATGATGAAGACTGTGAAAGAAGAAGA TATTAACAGAAATGGATGATTAAGACTGTGAAAGAAGAAGA Direct Loss 0.943144707095475 0 NA NA prediction 0.88628941419095 Functional Loss - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36300627 chr14:36300627 stopgain 1.000 1 21 hm7G_associated_SNPs_4593 0 0 1 0 2 BRMS1L chr14:36300706 5'GT 36300706 Upstream 80bp 4474 chr10 134016227 134016227 1 + G A rs148201353 134016227 + 134016207 134016247 41 ATAAGTCAGGGCCGAGTGGCGCTGGAGGACGGGAAGATGTT ATAAGTCAGGGCCGAGTGGCACTGGAGGACGGGAAGATGTT Direct Loss 0.943133666628923 0 NA NA prediction 0.886267333257846 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134016227 chr10:134016227 synonymous SNV . 0 21 hm7G_associated_SNPs_4594 0 0 0 0 1 DPYSL4 chr10:134016150 3'AG 134016150 Downstream 78bp 4475 chr12 21680107 21680107 1 + G T LUSC 21680107 + 21680087 21680127 41 AACTGGACTCCTCAAGCTATGCTCTACCTGAAAGGGGCACG AACTGGACTCCTCAAGCTATTCTCTACCTGAAAGGGGCACG Direct Loss 0.943119266654729 0 NA NA prediction 0.886238533309459 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680107 chr12:21680107 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_4595 0 0 0 0 2 SPX chr12:21680069 3'AG 21680069 Downstream 39bp 4476 chr12 21680107 21680107 1 + G T LUSC 21680107 + 21680087 21680127 41 AACTGGACTCCTCAAGCTATGCTCTACCTGAAAGGGGCACG AACTGGACTCCTCAAGCTATTCTCTACCTGAAAGGGGCACG Direct Loss 0.943119266654729 0 NA NA prediction 0.886238533309459 Functional Loss - SPX ENSG00000134548 CDS Human protein_coding chr12:21680107 chr12:21680107 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_4595 0 0 0 0 2 SPX chr12:21680126 5'GT 21680126 Upstream 20bp 4477 chr10 18276457 18276457 1 + G A STAD 18276457 + 18276437 18276477 41 CTTCTCACACTGGGCTCCATGCTGGGGACAGCGCTGGTCCT CTTCTCACACTGGGCTCCATACTGGGGACAGCGCTGGTCCT Direct Loss 0.943114362741644 0 NA NA prediction 0.886228725483289 Functional Loss - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18276457 chr10:18276457 nonsynonymous SNV 0.985 2 21 hm7G_associated_SNPs_4596 0 0 0 0 1 SLC39A12 chr10:18276408 3'AG 18276408 Downstream 50bp 4478 chr3 51426367 51426367 1 + G A BLCA 51426367 + 51426347 51426387 41 GACCTGAGCACAGTGGACCTGAAGAAGCTCCGAGTTAAAGA GACCTGAGCACAGTGGACCTAAAGAAGCTCCGAGTTAAAGA Direct Loss 0.943106653445832 0 NA NA prediction 0.886213306891665 Functional Loss - MANF ENSG00000145050 CDS Human protein_coding chr3:51426367 chr3:51426367 synonymous SNV . 0 21 hm7G_associated_SNPs_4598 0 0 1 0 1 MANF chr3:51426336 3'AG 51426336 Downstream 32bp 4479 chr7 12620732 12620732 1 + G A UCEC 12620732 + 12620712 12620752 41 CATGTTCTTACGAACGACCTGACAGCCAAGAGGCTCCTACA CATGTTCTTACGAACGACCTAACAGCCAAGAGGCTCCTACA Direct Loss 0.943105136907061 0 NA NA prediction 0.886210273814123 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12620732 chr7:12620732 synonymous SNV . 0 21 hm7G_associated_SNPs_4599 0 0 0 0 1 SCIN chr7:12620685 3'AG 12620685 Downstream 48bp 4480 chr16 1396022 1396022 1 + G T LUAD 1396022 + 1396002 1396042 41 ACCCTCTTCTATACGGAGCTGCTTCGGAAGAAGGTGGACAC ACCCTCTTCTATACGGAGCTTCTTCGGAAGAAGGTGGACAC Direct Loss 0.943103292479117 0 NA NA prediction 0.886206584958233 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1396022 chr16:1396022 synonymous SNV . 0 21 hm7G_associated_SNPs_4600 0 0 0 0 2 BAIAP3 chr16:1395987 3'AG 1395987 Downstream 36bp 4481 chr16 1396022 1396022 1 + G T LUAD 1396022 + 1396002 1396042 41 ACCCTCTTCTATACGGAGCTGCTTCGGAAGAAGGTGGACAC ACCCTCTTCTATACGGAGCTTCTTCGGAAGAAGGTGGACAC Direct Loss 0.943103292479117 0 NA NA prediction 0.886206584958233 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1396022 chr16:1396022 synonymous SNV . 0 21 hm7G_associated_SNPs_4600 0 0 0 0 2 BAIAP3 chr16:1396079 5'GT 1396079 Upstream 58bp 4482 chr18 905423 905423 1 + G C GBM 905423 + 905403 905443 41 GGAGCGAGGCTGGCCCTGCTGGTCTATGGGATAATCATGCA GGAGCGAGGCTGGCCCTGCTCGTCTATGGGATAATCATGCA Direct Loss 0.943103202245706 0 NA NA prediction 0.886206404491412 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human processed_transcript chr18:905423 chr18:905423 synonymous SNV . 0 21 hm7G_associated_SNPs_4601 0 0 0 0 2 ADCYAP1 chr18:905387 3'AG 905387 Downstream 37bp 4483 chr18 905423 905423 1 + G C GBM 905423 + 905403 905443 41 GGAGCGAGGCTGGCCCTGCTGGTCTATGGGATAATCATGCA GGAGCGAGGCTGGCCCTGCTCGTCTATGGGATAATCATGCA Direct Loss 0.943103202245706 0 NA NA prediction 0.886206404491412 Functional Loss - ADCYAP1 ENSG00000141433 CDS Human protein_coding chr18:905423 chr18:905423 synonymous SNV . 0 21 hm7G_associated_SNPs_4601 0 0 0 0 2 ADCYAP1 chr18:905497 5'GT 905497 Upstream 75bp 4484 chr12 124071360 124071360 1 + G T SARC 124071360 + 124071340 124071380 41 CCAGTGGGAAATACACATTTGCTGCTCACATGGATGGAACA CCAGTGGGAAATACACATTTTCTGCTCACATGGATGGAACA Direct Loss 0.943095587311172 0 NA NA prediction 0.886191174622344 Functional Loss - TMED2 ENSG00000086598 CDS Human protein_coding chr12:124071360 chr12:124071360 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4602 0 0 1 0 1 TMED2 chr12:124071294 3'AG 124071294 Downstream 67bp 4485 chr7 79828629 79828629 1 + G T LUAD 79828629 + 79828609 79828649 41 TGGAGTTATAAAGAGATTGTGGAAAGATAGTGGTGTACAAG TGGAGTTATAAAGAGATTGTTGAAAGATAGTGGTGTACAAG Direct Loss 0.943088721725776 0 NA NA prediction 0.886177443451553 Functional Loss - GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79828629 chr7:79828629 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4605 0 0 1 0 2 GNAI1 chr7:79828541 3'AG 79828541 Downstream 89bp 4486 chr7 79828629 79828629 1 + G T LUAD 79828629 + 79828609 79828649 41 TGGAGTTATAAAGAGATTGTGGAAAGATAGTGGTGTACAAG TGGAGTTATAAAGAGATTGTTGAAAGATAGTGGTGTACAAG Direct Loss 0.943088721725776 0 NA NA prediction 0.886177443451553 Functional Loss - GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79828629 chr7:79828629 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4605 0 0 1 0 2 GNAI1 chr7:79828698 5'GT 79828698 Upstream 70bp 4487 chr17 34954650 34954650 1 + G A rs143176286 34954650 + 34954630 34954670 41 CTACCAGTCCATGAAGGAGCGGAATGTGGACGATGGGCACA CTACCAGTCCATGAAGGAGCAGAATGTGGACGATGGGCACA Direct Loss 0.943082971292319 0 NA NA prediction 0.886165942584638 Functional Loss - DHRS11 ENSG00000108272 CDS Human other chr17:34954650 chr17:34954650 nonsynonymous SNV 0.986 2 21 hm7G_associated_SNPs_4606 0 0 0 0 2 DHRS11 chr17:34954592 3'AG 34954592 Downstream 59bp 4488 chr17 34954650 34954650 1 + G A rs143176286 34954650 + 34954630 34954670 41 CTACCAGTCCATGAAGGAGCGGAATGTGGACGATGGGCACA CTACCAGTCCATGAAGGAGCAGAATGTGGACGATGGGCACA Direct Loss 0.943082971292319 0 NA NA prediction 0.886165942584638 Functional Loss - DHRS11 ENSG00000108272 CDS Human other chr17:34954650 chr17:34954650 nonsynonymous SNV 0.986 2 21 hm7G_associated_SNPs_4606 0 0 0 0 2 DHRS11 chr17:34954686 5'GT 34954686 Upstream 37bp 4489 chr2 27259456 27259456 1 + G A BLCA 27259456 + 27259436 27259476 41 GCCAACCTCACCGAGGGACTGAAAGGTAACAGGGAAATAGG GCCAACCTCACCGAGGGACTAAAAGGTAACAGGGAAATAGG Direct Loss 0.9430665430164 0 NA NA prediction 0.8861330860328 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27259456 chr2:27259456 synonymous SNV . 0 21 hm7G_associated_SNPs_4608 0 0 1 0 1 TMEM214 chr2:27259460 5'GT 27259460 Upstream 5bp 4490 chr8 136533511 136533511 1 + G T LUAD 136533511 + 136533491 136533531 41 TTTCAAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATCGA TTTCAAAAAGGAGAAGGCAATGATGAAGAAAAGTACATCGA Direct Loss 0.943063369510894 0 NA NA prediction 0.886126739021788 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136533511 chr8:136533511 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4609 0 0 0 0 2 KHDRBS3 chr8:136533480 3'AG 136533480 Downstream 32bp 4491 chr8 136533511 136533511 1 + G T LUAD 136533511 + 136533491 136533531 41 TTTCAAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATCGA TTTCAAAAAGGAGAAGGCAATGATGAAGAAAAGTACATCGA Direct Loss 0.943063369510894 0 NA NA prediction 0.886126739021788 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136533511 chr8:136533511 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4609 0 0 0 0 2 KHDRBS3 chr8:136533598 5'GT 136533598 Upstream 88bp 4492 chr2 11304381 11304381 1 + G T LUAD 11304381 + 11304361 11304401 41 CAGAAGTGGATCATAGACCTGGCCATGGTAAGTATTATGCT CAGAAGTGGATCATAGACCTTGCCATGGTAAGTATTATGCT Direct Loss 0.943051290084461 0 NA NA prediction 0.886102580168922 Functional Loss - PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11304381 chr2:11304381 synonymous SNV . 0 21 hm7G_associated_SNPs_4613 0 0 0 0 2 PQLC3 chr2:11304330 3'AG 11304330 Downstream 52bp 4493 chr2 11304381 11304381 1 + G T LUAD 11304381 + 11304361 11304401 41 CAGAAGTGGATCATAGACCTGGCCATGGTAAGTATTATGCT CAGAAGTGGATCATAGACCTTGCCATGGTAAGTATTATGCT Direct Loss 0.943051290084461 0 NA NA prediction 0.886102580168922 Functional Loss - PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11304381 chr2:11304381 synonymous SNV . 0 21 hm7G_associated_SNPs_4613 0 0 0 0 2 PQLC3 chr2:11304387 5'GT 11304387 Upstream 7bp 4494 chr19 42827896 42827896 1 + G T UCEC 42827896 + 42827876 42827916 41 ACGTTTATCAGCGACTCGGTGCCCAACTTCACGGAGCTCTT ACGTTTATCAGCGACTCGGTTCCCAACTTCACGGAGCTCTT Direct Loss 0.943048088041362 0 NA NA prediction 0.886096176082724 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42827896 chr19:42827896 synonymous SNV . 0 21 hm7G_associated_SNPs_4615 0 0 0 0 1 TMEM145 chr19:42827941 5'GT 42827941 Upstream 46bp 4495 chr12 6964934 6964934 1 + G A UCEC 6964934 + 6964914 6964954 41 TACAGAAAGAGGAGGACCCTGCTACAGGCACTGGAGACCCA TACAGAAAGAGGAGGACCCTACTACAGGCACTGGAGACCCA Direct Loss 0.94301302661853 0 NA NA prediction 0.886026053237061 Functional Loss - USP5 ENSG00000111667 CDS Human protein_coding chr12:6964934 chr12:6964934 nonsynonymous SNV 0.020 0 21 hm7G_associated_SNPs_4619 0 0 0 0 2 USP5 chr12:6964919 3'AG 6964919 Downstream 16bp 4496 chr12 6964934 6964934 1 + G A UCEC 6964934 + 6964914 6964954 41 TACAGAAAGAGGAGGACCCTGCTACAGGCACTGGAGACCCA TACAGAAAGAGGAGGACCCTACTACAGGCACTGGAGACCCA Direct Loss 0.94301302661853 0 NA NA prediction 0.886026053237061 Functional Loss - USP5 ENSG00000111667 CDS Human protein_coding chr12:6964934 chr12:6964934 nonsynonymous SNV 0.020 0 21 hm7G_associated_SNPs_4619 0 0 0 0 2 USP5 chr12:6964985 5'GT 6964985 Upstream 52bp 4497 chr3 186302239 186302239 1 + G C BLCA 186302239 + 186302219 186302259 41 GTACATATTTCCCGGGATAAGATCACCAGGCCAGGAGCGAA GTACATATTTCCCGGGATAACATCACCAGGCCAGGAGCGAA Direct Loss 0.94301017211504 0 NA NA prediction 0.886020344230079 Functional Loss - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186302239 chr3:186302239 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4620 0 0 1 0 1 DNAJB11 chr3:186302219 3'AG 186302219 Downstream 21bp 4498 chr15 25222048 25222048 1 + G T LUAD 25222048 + 25222028 25222068 41 GCATTGCTCGGGTACCACTTGCTGGAGCTGCTGGAGGCCCT GCATTGCTCGGGTACCACTTTCTGGAGCTGCTGGAGGCCCT Direct Loss 0.94299731630777 0 NA NA prediction 0.885994632615541 Functional Loss - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222048 chr15:25222048 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_4623 0 0 1 0 1 SNRPN chr15:25222024 3'AG 25222024 Downstream 25bp 4499 chr19 6751164 6751164 1 + G A STAD 6751164 + 6751144 6751184 41 CGGCTGGACCCGGGTCAGGCGGAAAGAGGGAGGCGAGGGCT CGGCTGGACCCGGGTCAGGCAGAAAGAGGGAGGCGAGGGCT Direct Loss 0.942991025006194 0 NA NA prediction 0.885982050012389 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6751164 chr19:6751164 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_4625 0 0 1 0 1 TRIP10 chr19:6751074 3'AG 6751074 Downstream 91bp 4500 chr1 46774775 46774775 1 + G T LGG 46774775 + 46774755 46774795 41 TTTGTTTTCCTTTTGTAGGAGGAAGAGGAAGAGGAGGAATT TTTGTTTTCCTTTTGTAGGATGAAGAGGAAGAGGAGGAATT Direct Loss 0.942990520205263 0 NA NA prediction 0.885981040410527 Functional Loss - UQCRH ENSG00000173660 CDS Human protein_coding chr1:46774775 chr1:46774775 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_4626 0 0 1 0 2 UQCRH chr1:46774773 3'AG 46774773 Downstream 3bp 4501 chr1 46774775 46774775 1 + G T LGG 46774775 + 46774755 46774795 41 TTTGTTTTCCTTTTGTAGGAGGAAGAGGAAGAGGAGGAATT TTTGTTTTCCTTTTGTAGGATGAAGAGGAAGAGGAGGAATT Direct Loss 0.942990520205263 0 NA NA prediction 0.885981040410527 Functional Loss - UQCRH ENSG00000173660 CDS Human protein_coding chr1:46774775 chr1:46774775 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_4626 0 0 1 0 2 UQCRH chr1:46774799 5'GT 46774799 Upstream 25bp 4502 chr6 161152843 161152843 1 + G A COAD 161152843 + 161152823 161152863 41 CACTGTTACTGGGACGCCATGCCAGGACTGGGCTGCCCAGG CACTGTTACTGGGACGCCATACCAGGACTGGGCTGCCCAGG Direct Loss 0.942984787952051 0 NA NA prediction 0.885969575904102 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161152843 chr6:161152843 nonsynonymous SNV 0.261 4 21 hm7G_associated_SNPs_4627 0 0 0 0 2 PLG chr6:161152777 3'AG 161152777 Downstream 67bp 4503 chr6 161152843 161152843 1 + G A COAD 161152843 + 161152823 161152863 41 CACTGTTACTGGGACGCCATGCCAGGACTGGGCTGCCCAGG CACTGTTACTGGGACGCCATACCAGGACTGGGCTGCCCAGG Direct Loss 0.942984787952051 0 NA NA prediction 0.885969575904102 Functional Loss - PLG ENSG00000122194 CDS Human protein_coding chr6:161152843 chr6:161152843 nonsynonymous SNV 0.261 4 21 hm7G_associated_SNPs_4627 0 0 0 0 2 PLG chr6:161152925 5'GT 161152925 Upstream 83bp 4504 chr11 129312804 129312804 1 + G A SKCM 129312804 + 129312784 129312824 41 TCAGAATCGCAGGATGAAATGGAAGAAAATGGTAAGAAAGG TCAGAATCGCAGGATGAAATAGAAGAAAATGGTAAGAAAGG Direct Loss 0.942982329836189 0 NA NA prediction 0.885964659672377 Functional Loss - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129312804 chr11:129312804 stopgain 1.000 1 21 hm7G_associated_SNPs_4628 0 0 0 0 2 BARX2 chr11:129312730 3'AG 129312730 Downstream 75bp 4505 chr11 129312804 129312804 1 + G A SKCM 129312804 + 129312784 129312824 41 TCAGAATCGCAGGATGAAATGGAAGAAAATGGTAAGAAAGG TCAGAATCGCAGGATGAAATAGAAGAAAATGGTAAGAAAGG Direct Loss 0.942982329836189 0 NA NA prediction 0.885964659672377 Functional Loss - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129312804 chr11:129312804 stopgain 1.000 1 21 hm7G_associated_SNPs_4628 0 0 0 0 2 BARX2 chr11:129312814 5'GT 129312814 Upstream 11bp 4506 chr11 32610234 32610234 1 + G A CESC 32610234 + 32610214 32610254 41 GAAAGCCTATGTGAAAAGCTGGTCAAATTTCGCGAAGGTGA GAAAGCCTATGTGAAAAGCTAGTCAAATTTCGCGAAGGTGA Direct Loss 0.942978306667211 0 NA NA prediction 0.885956613334422 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32610234 chr11:32610234 synonymous SNV . 0 21 hm7G_associated_SNPs_4629 0 0 1 0 2 EIF3M chr11:32610140 3'AG 32610140 Downstream 95bp 4507 chr11 32610234 32610234 1 + G A CESC 32610234 + 32610214 32610254 41 GAAAGCCTATGTGAAAAGCTGGTCAAATTTCGCGAAGGTGA GAAAGCCTATGTGAAAAGCTAGTCAAATTTCGCGAAGGTGA Direct Loss 0.942978306667211 0 NA NA prediction 0.885956613334422 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32610234 chr11:32610234 synonymous SNV . 0 21 hm7G_associated_SNPs_4629 0 0 1 0 2 EIF3M chr11:32610278 5'GT 32610278 Upstream 45bp 4508 chr6 33382137 33382137 1 + G A OV 33382137 + 33382117 33382157 41 AATTGGGACAGTTTGCTCCTGGGGGAGGTAAGGGGTAGTGC AATTGGGACAGTTTGCTCCTAGGGGAGGTAAGGGGTAGTGC Direct Loss 0.942975778245115 0 NA NA prediction 0.88595155649023 Functional Loss - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33382137 chr6:33382137 synonymous SNV . 0 21 hm7G_associated_SNPs_4630 0 0 1 0 1 PHF1 chr6:33382143 5'GT 33382143 Upstream 7bp 4509 chr4 164436515 164436515 1 + G A rs76050545 164436515 + 164436495 164436535 41 GCAGATTGAGTTACATAACAGTATCAGGGACAGGCAGGGGA GCAGATTGAGTTACATAACAATATCAGGGACAGGCAGGGGA Direct Loss 0.942967109547924 0 NA NA prediction 0.885934219095848 Functional Loss - TMA16 ENSG00000198498 CDS Human protein_coding chr4:164436515 chr4:164436515 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4631 0 0 1 0 2 TMA16 chr4:164436465 3'AG 164436465 Downstream 51bp 4510 chr4 164436515 164436515 1 + G A rs76050545 164436515 + 164436495 164436535 41 GCAGATTGAGTTACATAACAGTATCAGGGACAGGCAGGGGA GCAGATTGAGTTACATAACAATATCAGGGACAGGCAGGGGA Direct Loss 0.942967109547924 0 NA NA prediction 0.885934219095848 Functional Loss - TMA16 ENSG00000198498 CDS Human protein_coding chr4:164436515 chr4:164436515 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4631 0 0 1 0 2 TMA16 chr4:164436613 5'GT 164436613 Upstream 99bp 4511 chr9 90388023 90388023 1 + G T UCEC 90388023 + 90388003 90388043 41 TTTCCTTGAAGACCAGTGAAGAATTCAGGCAGGTGGTGAAT TTTCCTTGAAGACCAGTGAATAATTCAGGCAGGTGGTGAAT Direct Loss 0.942965728275415 0 NA NA prediction 0.88593145655083 Functional Loss - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90388023 chr9:90388023 . . 0 21 hm7G_associated_SNPs_4632 0 0 0 0 1 CTSL3P chr9:90388014 3'AG 90388014 Downstream 10bp 4512 chr15 23609710 23609710 1 + G A rs150829726 23609710 + 23609690 23609730 41 TATCAGAACCAGGGGGCCGTGCCAAAGATGCGGCACTGGGA TATCAGAACCAGGGGGCCGTACCAAAGATGCGGCACTGGGA Direct Loss 0.942962879535527 0 NA NA prediction 0.885925759071055 Functional Loss - GOLGA8S ENSG00000261739 CDS Human protein_coding chr15:23609710 chr15:23609710 nonsynonymous SNV 0.000 1 21 hm7G_associated_SNPs_4633 0 0 0 0 1 GOLGA8S chr15:23609770 5'GT 23609770 Upstream 61bp 4513 chr19 33465059 33465059 1 + G A DLBC 33465059 + 33465039 33465079 41 AGTTTACTGTGCTGGACCTTGGAATGGTGCTGCTTCCAGTG AGTTTACTGTGCTGGACCTTAGAATGGTGCTGCTTCCAGTG Direct Loss 0.942942499101491 0 NA NA prediction 0.885884998202983 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465059 chr19:33465059 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_4638 0 0 1 0 2 FAAP24 chr19:33464966 3'AG 33464966 Downstream 94bp 4514 chr19 33465059 33465059 1 + G A DLBC 33465059 + 33465039 33465079 41 AGTTTACTGTGCTGGACCTTGGAATGGTGCTGCTTCCAGTG AGTTTACTGTGCTGGACCTTAGAATGGTGCTGCTTCCAGTG Direct Loss 0.942942499101491 0 NA NA prediction 0.885884998202983 Functional Loss - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465059 chr19:33465059 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_4638 0 0 1 0 2 FAAP24 chr19:33465118 5'GT 33465118 Upstream 60bp 4515 chr3 141464082 141464082 1 + G A DLBC 141464082 + 141464062 141464102 41 GAACAATCGCTGCCCTCTCTGCCAGCAGGACTGGGTGGTCC GAACAATCGCTGCCCTCTCTACCAGCAGGACTGGGTGGTCC Direct Loss 0.942926161917717 0 NA NA prediction 0.885852323835433 Functional Loss - RNF7 ENSG00000114125 CDS Human protein_coding chr3:141464082 chr3:141464082 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4639 0 0 1 1 1 RNF7 chr3:141464001 3'AG 141464001 Downstream 82bp 4516 chr19 41704778 41704778 1 + G T SARC 41704778 + 41704758 41704798 41 GACCTTGTCGATGCCTTCCTGCTGAAGATGGCACAGGTGTG GACCTTGTCGATGCCTTCCTTCTGAAGATGGCACAGGTGTG Direct Loss 0.942917849522565 0 NA NA prediction 0.88583569904513 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41704778 chr19:41704778 synonymous SNV . 0 21 hm7G_associated_SNPs_4640 0 0 0 0 1 CYP2S1 chr19:41704793 5'GT 41704793 Upstream 16bp 4517 chr8 99105523 99105523 1 + G T UCEC 99105523 + 99105503 99105543 41 GGGCTGAAACCAAAGAAGAAGAAACAGGAGAAGTGGTGGAC GGGCTGAAACCAAAGAAGAATAAACAGGAGAAGTGGTGGAC Direct Loss 0.942913352291286 0 NA NA prediction 0.885826704582572 Functional Loss - ERICH5 ENSG00000177459 CDS Human protein_coding chr8:99105523 chr8:99105523 stopgain 1.000 1 21 hm7G_associated_SNPs_4642 0 0 1 0 1 ERICH5 chr8:99105449 3'AG 99105449 Downstream 75bp 4518 chr17 58508587 58508587 1 + G T UCEC 58508587 + 58508567 58508607 41 ACCAAAACTCAAGAGGAAGAGGATAAAGGAAGCCCCAGAAA ACCAAAACTCAAGAGGAAGATGATAAAGGAAGCCCCAGAAA Direct Loss 0.942910410058829 0 NA NA prediction 0.885820820117658 Functional Loss - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58508587 chr17:58508587 nonsynonymous SNV 0.951 1 21 hm7G_associated_SNPs_4643 0 0 0 0 1 C17orf64 chr17:58508542 3'AG 58508542 Downstream 46bp 4519 chr9 95846867 95846867 1 + G A SKCM 95846867 + 95846847 95846887 41 GCCAGTGTGACCCGCAGCGTGGACAAGGACCCTGGGATCCC GCCAGTGTGACCCGCAGCGTAGACAAGGACCCTGGGATCCC Direct Loss 0.942905221934191 0 NA NA prediction 0.885810443868383 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95846867 chr9:95846867 synonymous SNV . 0 21 hm7G_associated_SNPs_4644 0 0 0 0 1 SUSD3 chr9:95846819 3'AG 95846819 Downstream 49bp 4520 chr1 154962840 154962840 1 + G C BLCA 154962840 + 154962820 154962860 41 ATCTGCAGATGTTGGAAGCTGAGGGCAGCATGAAGCAGGCC ATCTGCAGATGTTGGAAGCTCAGGGCAGCATGAAGCAGGCC Direct Loss 0.942901970011651 0 NA NA prediction 0.885803940023301 Functional Loss - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962840 chr1:154962840 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_4645 0 0 1 0 1 FLAD1 chr1:154962815 3'AG 154962815 Downstream 26bp 4521 chr1 150321635 150321635 1 + G A HNSC 150321635 + 150321615 150321655 41 ACAAGATTTCTCTTCCAGATGATGAGGAGTCTGATGAGGAA ACAAGATTTCTCTTCCAGATAATGAGGAGTCTGATGAGGAA Direct Loss 0.942889876193125 0 NA NA prediction 0.88577975238625 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150321635 chr1:150321635 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4646 0 0 1 0 2 PRPF3 chr1:150321633 3'AG 150321633 Downstream 3bp 4522 chr1 150321635 150321635 1 + G A HNSC 150321635 + 150321615 150321655 41 ACAAGATTTCTCTTCCAGATGATGAGGAGTCTGATGAGGAA ACAAGATTTCTCTTCCAGATAATGAGGAGTCTGATGAGGAA Direct Loss 0.942889876193125 0 NA NA prediction 0.88577975238625 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150321635 chr1:150321635 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4646 0 0 1 0 2 PRPF3 chr1:150321694 5'GT 150321694 Upstream 60bp 4523 chr1 99762345 99762345 1 + G C PAAD 99762345 + 99762325 99762365 41 GCCTCTCCAAAAGAAGAAATGGGGTCGGACTAGAGCCCAAC GCCTCTCCAAAAGAAGAAATCGGGTCGGACTAGAGCCCAAC Direct Loss 0.942889137803441 0 NA NA prediction 0.885778275606882 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99762345 chr1:99762345 nonsynonymous SNV 0.842 3 21 hm7G_associated_SNPs_4647 0 0 0 0 2 PLPPR4 chr1:99762294 3'AG 99762294 Downstream 52bp 4524 chr1 99762345 99762345 1 + G C PAAD 99762345 + 99762325 99762365 41 GCCTCTCCAAAAGAAGAAATGGGGTCGGACTAGAGCCCAAC GCCTCTCCAAAAGAAGAAATCGGGTCGGACTAGAGCCCAAC Direct Loss 0.942889137803441 0 NA NA prediction 0.885778275606882 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99762345 chr1:99762345 nonsynonymous SNV 0.842 3 21 hm7G_associated_SNPs_4647 0 0 0 0 2 PLPPR4 chr1:99762423 5'GT 99762423 Upstream 79bp 4525 chr17 41931212 41931212 1 + G T UCEC 41931212 + 41931192 41931232 41 CCGGCAGCCACCACAGCCAAGCAGGGGAAGACAGGGGCTGA CCGGCAGCCACCACAGCCAATCAGGGGAAGACAGGGGCTGA Direct Loss 0.942877749318877 0 NA NA prediction 0.885755498637754 Functional Loss - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41931212 chr17:41931212 nonsynonymous SNV 0.932 2 21 hm7G_associated_SNPs_4650 0 0 0 0 1 CD300LG chr17:41931175 3'AG 41931175 Downstream 38bp 4526 chr10 70721849 70721849 1 + G T THCA 70721849 + 70721829 70721869 41 ACTTGATAGGAAATACCTGTGGAACAAAAAGAAGGCGCTTT ACTTGATAGGAAATACCTGTTGAACAAAAAGAAGGCGCTTT Direct Loss 0.942872628479906 0 NA NA prediction 0.885745256959811 Functional Loss - DDX21 ENSG00000165732 CDS Human protein_coding chr10:70721849 chr10:70721849 synonymous SNV . 0 21 hm7G_associated_SNPs_4651 0 0 1 0 2 DDX21 chr10:70721838 3'AG 70721838 Downstream 12bp 4527 chr10 70721849 70721849 1 + G T THCA 70721849 + 70721829 70721869 41 ACTTGATAGGAAATACCTGTGGAACAAAAAGAAGGCGCTTT ACTTGATAGGAAATACCTGTTGAACAAAAAGAAGGCGCTTT Direct Loss 0.942872628479906 0 NA NA prediction 0.885745256959811 Functional Loss - DDX21 ENSG00000165732 CDS Human protein_coding chr10:70721849 chr10:70721849 synonymous SNV . 0 21 hm7G_associated_SNPs_4651 0 0 1 0 2 DDX21 chr10:70721913 5'GT 70721913 Upstream 65bp 4528 chr17 42426577 42426577 1 + G T CESC 42426577 + 42426557 42426597 41 GCCTTAACAGCAGGGCTGGTGGCTGGAACGCGGTGCCCAGA GCCTTAACAGCAGGGCTGGTTGCTGGAACGCGGTGCCCAGA Direct Loss 0.942843342483818 0 NA NA prediction 0.885686684967635 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42426577 chr17:42426577 synonymous SNV . 0 21 hm7G_associated_SNPs_4653 0 0 1 0 1 GRN chr17:42426670 5'GT 42426670 Upstream 94bp 4529 chr19 36369985 36369985 1 + G A rs144442676 36369985 + 36369965 36370005 41 TCTCCCTGCAGGCACCAGCTGGGACAGGGGTGTCCCGTGAG TCTCCCTGCAGGCACCAGCTAGGACAGGGGTGTCCCGTGAG Direct Loss 0.942839241068994 0 NA NA prediction 0.885678482137987 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36369985 chr19:36369985 nonsynonymous SNV 0.917 3 21 hm7G_associated_SNPs_4654 0 0 0 0 1 APLP1 chr19:36369976 3'AG 36369976 Downstream 10bp 4530 chr10 27448608 27448608 1 + G A LUAD 27448608 + 27448588 27448628 41 TACATATATATGGTTATTTTGATGAAGAGATGGCTGTGAAA TACATATATATGGTTATTTTAATGAAGAGATGGCTGTGAAA Direct Loss 0.942831082132733 0 NA NA prediction 0.885662164265465 Functional Loss - MASTL ENSG00000120539 CDS Human protein_coding chr10:27448608 chr10:27448608 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4655 0 0 1 0 2 MASTL chr10:27448548 3'AG 27448548 Downstream 61bp 4531 chr10 27448608 27448608 1 + G A LUAD 27448608 + 27448588 27448628 41 TACATATATATGGTTATTTTGATGAAGAGATGGCTGTGAAA TACATATATATGGTTATTTTAATGAAGAGATGGCTGTGAAA Direct Loss 0.942831082132733 0 NA NA prediction 0.885662164265465 Functional Loss - MASTL ENSG00000120539 CDS Human protein_coding chr10:27448608 chr10:27448608 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4655 0 0 1 0 2 MASTL chr10:27448687 5'GT 27448687 Upstream 80bp 4532 chr5 147821614 147821614 1 + G T SARC 147821614 + 147821594 147821634 41 GGAGAGGAAATTTCAGAGATGCGTCAGATGAAGAAGGGTGT GGAGAGGAAATTTCAGAGATTCGTCAGATGAAGAAGGGTGT Direct Loss 0.942813566017037 0 NA NA prediction 0.885627132034074 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147821614 chr5:147821614 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4657 0 0 1 0 1 FBXO38 chr5:147821532 3'AG 147821532 Downstream 83bp 4533 chr2 63824562 63824562 1 + G T SARC 63824562 + 63824542 63824582 41 CAACAGATAAAGAAGACGTTGCCTTCAAAGACCTGGATGTG CAACAGATAAAGAAGACGTTTCCTTCAAAGACCTGGATGTG Direct Loss 0.942812565272199 0 NA NA prediction 0.885625130544398 Functional Loss - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63824562 chr2:63824562 nonsynonymous SNV 0.986 3 21 hm7G_associated_SNPs_4658 0 0 1 0 1 MDH1 chr2:63824533 3'AG 63824533 Downstream 30bp 4534 chr1 154245861 154245861 1 + G A LUSC 154245861 + 154245841 154245881 41 CTCGAGATGAAGATGATGATGAGGAAGAAGAAGAAGAAGGG CTCGAGATGAAGATGATGATAAGGAAGAAGAAGAAGAAGGG Direct Loss 0.942808673161751 0 NA NA prediction 0.885617346323501 Functional Loss - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154245861 chr1:154245861 nonsynonymous SNV 0.675 1 21 hm7G_associated_SNPs_4660 0 0 1 0 1 HAX1 chr1:154245812 3'AG 154245812 Downstream 50bp 4535 chr17 45787869 45787869 1 + G C HNSC 45787869 + 45787849 45787889 41 CTTCTCTCTCGACAGTTGCTGATGGAGACGGTGGGCTCCGA CTTCTCTCTCGACAGTTGCTCATGGAGACGGTGGGCTCCGA Direct Loss 0.942807666071114 0 NA NA prediction 0.885615332142227 Functional Loss - TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45787869 chr17:45787869 synonymous SNV 0.997 0 21 hm7G_associated_SNPs_4661 0 0 0 0 1 TBKBP1 chr17:45787864 3'AG 45787864 Downstream 6bp 4536 chr3 133169277 133169277 1 + G A STAD 133169277 + 133169257 133169297 41 GAGAGATGTTGAAAAGAACCGGGTGGAGGCAGGAGCCCTGC GAGAGATGTTGAAAAGAACCAGGTGGAGGCAGGAGCCCTGC Direct Loss 0.942799472798626 0 NA NA prediction 0.885598945597251 Functional Loss - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133169277 chr3:133169277 nonsynonymous SNV 0.887 1 21 hm7G_associated_SNPs_4662 0 0 0 0 1 BFSP2 chr3:133169308 5'GT 133169308 Upstream 32bp 4537 chr20 31608357 31608357 1 + G C LUSC 31608357 + 31608337 31608377 41 TTCTCTTTCAGGGATGTCCAGCTCACGGTGGCCTCCTCCAA TTCTCTTTCAGGGATGTCCACCTCACGGTGGCCTCCTCCAA Direct Loss 0.942794790238948 0 NA NA prediction 0.885589580477895 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31608357 chr20:31608357 nonsynonymous SNV 0.093 1 21 hm7G_associated_SNPs_4663 0 0 1 0 2 BPIFB2 chr20:31608348 3'AG 31608348 Downstream 10bp 4538 chr20 31608357 31608357 1 + G C LUSC 31608357 + 31608337 31608377 41 TTCTCTTTCAGGGATGTCCAGCTCACGGTGGCCTCCTCCAA TTCTCTTTCAGGGATGTCCACCTCACGGTGGCCTCCTCCAA Direct Loss 0.942794790238948 0 NA NA prediction 0.885589580477895 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31608357 chr20:31608357 nonsynonymous SNV 0.093 1 21 hm7G_associated_SNPs_4663 0 0 1 0 2 BPIFB2 chr20:31608393 5'GT 31608393 Upstream 37bp 4539 chr2 220149542 220149542 1 + G A rs34127289 220149542 + 220149522 220149562 41 TGTCAGAGATGGAGGCAGCTGGGAAGAAACCCGCAGGTGGG TGTCAGAGATGGAGGCAGCTAGGAAGAAACCCGCAGGTGGG Direct Loss 0.942787548967996 0 NA NA prediction 0.885575097935992 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220149542 chr2:220149542 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4664 0 0 1 0 1 DNAJB2 chr2:220149557 5'GT 220149557 Upstream 16bp 4540 chr20 37570666 37570666 1 + G T SARC 37570666 + 37570646 37570686 41 CAGAGACCTGCAAGAAATATGCAGGAAACAGGGAGTTGCTG CAGAGACCTGCAAGAAATATTCAGGAAACAGGGAGTTGCTG Direct Loss 0.942786148500171 0 NA NA prediction 0.885572297000341 Functional Loss - FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570666 chr20:37570666 nonsynonymous SNV 0.984 2 21 hm7G_associated_SNPs_4665 0 0 1 0 1 FAM83D chr20:37570602 3'AG 37570602 Downstream 65bp 4541 chr4 155490877 155490877 1 + G A SKCM 155490877 + 155490857 155490897 41 ATGGATGGAGCATCTCAGCTGATGGGAGAAAACAGGACCAT ATGGATGGAGCATCTCAGCTAATGGGAGAAAACAGGACCAT Direct Loss 0.942785208279533 0 NA NA prediction 0.885570416559065 Functional Loss - FGB ENSG00000171564 CDS Human protein_coding chr4:155490877 chr4:155490877 synonymous SNV . 0 21 hm7G_associated_SNPs_4666 0 0 1 0 1 FGB chr4:155490951 5'GT 155490951 Upstream 75bp 4542 chr2 71191895 71191895 1 + G A COAD 71191895 + 71191875 71191915 41 TATGCCATCGGGAAGGACGTGCAGGCCATGAAGGCAGTAGT TATGCCATCGGGAAGGACGTACAGGCCATGAAGGCAGTAGT Direct Loss 0.942780175149283 0 NA NA prediction 0.885560350298566 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71191895 chr2:71191895 synonymous SNV . 0 21 hm7G_associated_SNPs_4667 0 0 0 0 1 ATP6V1B1 chr2:71191866 3'AG 71191866 Downstream 30bp 4543 chr16 88925126 88925126 1 + G A COAD 88925126 + 88925106 88925146 41 TGGTGGATGAGAAGATCTCCGCAATGGGGAAGGCCCTGGTC TGGTGGATGAGAAGATCTCCACAATGGGGAAGGCCCTGGTC Direct Loss 0.942775998141415 0 NA NA prediction 0.88555199628283 Functional Loss - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88925126 chr16:88925126 nonsynonymous SNV 0.540 1 21 hm7G_associated_SNPs_4669 0 0 1 0 3 TRAPPC2L chr16:88925027 3'AG 88925027 Downstream 100bp 4544 chr16 88925126 88925126 1 + G A COAD 88925126 + 88925106 88925146 41 TGGTGGATGAGAAGATCTCCGCAATGGGGAAGGCCCTGGTC TGGTGGATGAGAAGATCTCCACAATGGGGAAGGCCCTGGTC Direct Loss 0.942775998141415 0 NA NA prediction 0.88555199628283 Functional Loss - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88925126 chr16:88925126 nonsynonymous SNV 0.540 1 21 hm7G_associated_SNPs_4669 0 0 1 0 3 TRAPPC2L chr16:88925197 5'GT 88925197 Upstream 72bp 4545 chr16 88925126 88925126 1 + G A COAD 88925126 + 88925106 88925146 41 TGGTGGATGAGAAGATCTCCGCAATGGGGAAGGCCCTGGTC TGGTGGATGAGAAGATCTCCACAATGGGGAAGGCCCTGGTC Direct Loss 0.942775998141415 0 NA NA prediction 0.88555199628283 Functional Loss - TRAPPC2L ENSG00000167515 CDS Human other chr16:88925126 chr16:88925126 nonsynonymous SNV 0.540 1 21 hm7G_associated_SNPs_4669 0 0 1 0 3 TRAPPC2L;TRAPPC2L chr16:88925199 5'GT 88925199 Upstream 74bp 4546 chr2 163204108 163204108 1 + G T SARC 163204108 + 163204088 163204128 41 TTTGGAAATTTTAGCATTCAGGTGCCAGGAATGCAGATGGG TTTGGAAATTTTAGCATTCATGTGCCAGGAATGCAGATGGG Direct Loss 0.942769853551308 0 NA NA prediction 0.885539707102617 Functional Loss - GCA ENSG00000115271 CDS Human protein_coding chr2:163204108 chr2:163204108 nonsynonymous SNV 0.846 0 21 hm7G_associated_SNPs_4670 0 0 1 0 1 GCA chr2:163204088 3'AG 163204088 Downstream 21bp 4547 chr12 121154450 121154450 1 + G A LUSC 121154450 + 121154430 121154470 41 GACCAGGAGGAGGATGAGGAGGAGGGAGGTGGAGACGTGGA GACCAGGAGGAGGATGAGGAAGAGGGAGGTGGAGACGTGGA Direct Loss 0.942762095295569 0 NA NA prediction 0.885524190591137 Functional Loss - UNC119B ENSG00000175970 CDS Human protein_coding chr12:121154450 chr12:121154450 synonymous SNV . 0 21 hm7G_associated_SNPs_4671 0 0 1 0 2 UNC119B chr12:121154431 3'AG 121154431 Downstream 20bp 4548 chr12 121154450 121154450 1 + G A LUSC 121154450 + 121154430 121154470 41 GACCAGGAGGAGGATGAGGAGGAGGGAGGTGGAGACGTGGA GACCAGGAGGAGGATGAGGAAGAGGGAGGTGGAGACGTGGA Direct Loss 0.942762095295569 0 NA NA prediction 0.885524190591137 Functional Loss - UNC119B ENSG00000175970 CDS Human protein_coding chr12:121154450 chr12:121154450 synonymous SNV . 0 21 hm7G_associated_SNPs_4671 0 0 1 0 2 UNC119B chr12:121154542 5'GT 121154542 Upstream 93bp 4549 chr10 96534881 96534881 1 + G T LUAD 96534881 + 96534861 96534901 41 AACGCATGGTGGTGCTGCATGGATATGAAGTGGTGAAGGAA AACGCATGGTGGTGCTGCATTGATATGAAGTGGTGAAGGAA Direct Loss 0.942759802405908 0 NA NA prediction 0.885519604811815 Functional Loss - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96534881 chr10:96534881 stopgain 0.193 0 21 hm7G_associated_SNPs_4672 0 0 0 0 2 CYP2C19 chr10:96534815 3'AG 96534815 Downstream 67bp 4550 chr10 96534881 96534881 1 + G T LUAD 96534881 + 96534861 96534901 41 AACGCATGGTGGTGCTGCATGGATATGAAGTGGTGAAGGAA AACGCATGGTGGTGCTGCATTGATATGAAGTGGTGAAGGAA Direct Loss 0.942759802405908 0 NA NA prediction 0.885519604811815 Functional Loss - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96534881 chr10:96534881 stopgain 0.193 0 21 hm7G_associated_SNPs_4672 0 0 0 0 2 CYP2C19 chr10:96534977 5'GT 96534977 Upstream 97bp 4551 chr10 88780084 88780084 1 + G A UCEC 88780084 + 88780064 88780104 41 ACTGTCTGCTGCCACACGATGCTGGGAGGCCTGGGGAAGCT ACTGTCTGCTGCCACACGATACTGGGAGGCCTGGGGAAGCT Direct Loss 0.942755827860413 0 NA NA prediction 0.885511655720825 Functional Loss - FAM25A ENSG00000188100 CDS Human protein_coding chr10:88780084 chr10:88780084 nonsynonymous SNV 0.823 1 21 hm7G_associated_SNPs_4673 0 0 0 0 1 FAM25A chr10:88780154 5'GT 88780154 Upstream 71bp 4552 chr14 71134435 71134435 1 + G C BLCA 71134435 + 71134415 71134455 41 GACAAAGCACTCTACTACCTGAAAGAAGCAAGGACCCAACA GACAAAGCACTCTACTACCTCAAAGAAGCAAGGACCCAACA Direct Loss 0.942748135238521 0 NA NA prediction 0.885496270477042 Functional Loss - TTC9 ENSG00000133985 CDS Human protein_coding chr14:71134435 chr14:71134435 synonymous SNV . 0 21 hm7G_associated_SNPs_4676 0 0 0 0 1 TTC9 chr14:71134463 5'GT 71134463 Upstream 29bp 4553 chr20 36151112 36151112 1 + G A SKCM 36151112 + 36151092 36151132 41 GCTGGCATACACGGTGTCGCGGACCGGGCGGCAGGTGTTGG GCTGGCATACACGGTGTCGCAGACCGGGCGGCAGGTGTTGG Direct Loss 0.942739762294599 0 NA NA prediction 0.885479524589199 Functional Loss - NNAT ENSG00000053438 CDS Human protein_coding chr20:36151112 chr20:36151112 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_4678 0 0 0 0 1 NNAT chr20:36151069 3'AG 36151069 Downstream 44bp 4554 chr16 89757022 89757022 1 + G C CESC 89757022 + 89757002 89757042 41 AAGAAGGTGCGGATGGACAAGGAGAAGGATGGTGAGCAGGA AAGAAGGTGCGGATGGACAACGAGAAGGATGGTGAGCAGGA Direct Loss 0.942735117766139 0 NA NA prediction 0.885470235532278 Functional Loss - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89757022 chr16:89757022 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_4680 0 0 1 0 2 CDK10 chr16:89756961 3'AG 89756961 Downstream 62bp 4555 chr16 89757022 89757022 1 + G C CESC 89757022 + 89757002 89757042 41 AAGAAGGTGCGGATGGACAAGGAGAAGGATGGTGAGCAGGA AAGAAGGTGCGGATGGACAACGAGAAGGATGGTGAGCAGGA Direct Loss 0.942735117766139 0 NA NA prediction 0.885470235532278 Functional Loss - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89757022 chr16:89757022 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_4680 0 0 1 0 2 CDK10 chr16:89757032 5'GT 89757032 Upstream 11bp 4556 chrX 69498463 69498463 1 + G A UCEC 69498463 + 69498443 69498483 41 TGGATGGCAAACTTAAGCATGAAGATACCAACCTGGCCTCT TGGATGGCAAACTTAAGCATAAAGATACCAACCTGGCCTCT Direct Loss 0.942733805934434 0 NA NA prediction 0.885467611868869 Functional Loss - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69498463 chrX:69498463 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_4681 0 0 0 0 1 ARR3 chrX:69498491 5'GT 69498491 Upstream 29bp 4557 chr12 48537884 48537884 1 + G C BLCA 48537884 + 48537864 48537904 41 TCATTTTCAACCTGTACTCTGAGGAGGGGAAGGGCATCTTC TCATTTTCAACCTGTACTCTCAGGAGGGGAAGGGCATCTTC Direct Loss 0.942731337336345 0 NA NA prediction 0.885462674672689 Functional Loss - PFKM ENSG00000152556 CDS Human protein_coding chr12:48537884 chr12:48537884 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_4682 0 0 1 0 2 PFKM chr12:48537829 3'AG 48537829 Downstream 56bp 4558 chr12 48537884 48537884 1 + G C BLCA 48537884 + 48537864 48537904 41 TCATTTTCAACCTGTACTCTGAGGAGGGGAAGGGCATCTTC TCATTTTCAACCTGTACTCTCAGGAGGGGAAGGGCATCTTC Direct Loss 0.942731337336345 0 NA NA prediction 0.885462674672689 Functional Loss - PFKM ENSG00000152556 CDS Human protein_coding chr12:48537884 chr12:48537884 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_4682 0 0 1 0 2 PFKM chr12:48537940 5'GT 48537940 Upstream 57bp 4559 chr13 39618253 39618253 1 + G T UCEC 39618253 + 39618233 39618273 41 TGATCCTTTGGCTGCATGGAGAAAATGGGACAGGGCCTGCT TGATCCTTTGGCTGCATGGATAAAATGGGACAGGGCCTGCT Direct Loss 0.942726580635037 0 NA NA prediction 0.885453161270074 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39618253 chr13:39618253 stopgain 1.000 1 21 hm7G_associated_SNPs_4683 0 0 1 0 2 NHLRC3 chr13:39618227 3'AG 39618227 Downstream 27bp 4560 chr13 39618253 39618253 1 + G T UCEC 39618253 + 39618233 39618273 41 TGATCCTTTGGCTGCATGGAGAAAATGGGACAGGGCCTGCT TGATCCTTTGGCTGCATGGATAAAATGGGACAGGGCCTGCT Direct Loss 0.942726580635037 0 NA NA prediction 0.885453161270074 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39618253 chr13:39618253 stopgain 1.000 1 21 hm7G_associated_SNPs_4683 0 0 1 0 2 NHLRC3 chr13:39618318 5'GT 39618318 Upstream 66bp 4561 chr5 159437854 159437854 1 + G A BLCA 159437854 + 159437834 159437874 41 TGGAAAAAAACATGTCGGATGAAGAGAAACAGGTAAGTATT TGGAAAAAAACATGTCGGATAAAGAGAAACAGGTAAGTATT Direct Loss 0.942695369200455 0 NA NA prediction 0.88539073840091 Functional Loss - TTC1 ENSG00000113312 CDS Human protein_coding chr5:159437854 chr5:159437854 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_4686 0 0 1 0 1 TTC1 chr5:159437865 5'GT 159437865 Upstream 12bp 4562 chr17 40765019 40765019 1 + G A HNSC 40765019 + 40764999 40765039 41 TTTCCCAACCAGGACGAGATGAGCGATGTGGTGGTCCAGCC TTTCCCAACCAGGACGAGATAAGCGATGTGGTGGTCCAGCC Direct Loss 0.942662404891203 0 NA NA prediction 0.885324809782406 Functional Loss - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765019 chr17:40765019 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_4692 0 0 1 0 2 TUBG1 chr17:40764965 3'AG 40764965 Downstream 55bp 4563 chr17 40765019 40765019 1 + G A HNSC 40765019 + 40764999 40765039 41 TTTCCCAACCAGGACGAGATGAGCGATGTGGTGGTCCAGCC TTTCCCAACCAGGACGAGATAAGCGATGTGGTGGTCCAGCC Direct Loss 0.942662404891203 0 NA NA prediction 0.885324809782406 Functional Loss - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40765019 chr17:40765019 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_4692 0 0 1 0 2 TUBG1 chr17:40765091 5'GT 40765091 Upstream 73bp 4564 chr12 54971106 54971106 1 + G A KIRC 54971106 + 54971086 54971126 41 CACAACCAGAATGGGAATCTGGATTAGCCCTGGGGCTGGCC CACAACCAGAATGGGAATCTAGATTAGCCCTGGGGCTGGCC Direct Loss 0.942658044801869 0 NA NA prediction 0.885316089603739 Functional Loss - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54971106 chr12:54971106 synonymous SNV . 0 21 hm7G_associated_SNPs_4693 0 0 0 0 2 PDE1B chr12:54971009 3'AG 54971009 Downstream 98bp 4565 chr12 54971106 54971106 1 + G A KIRC 54971106 + 54971086 54971126 41 CACAACCAGAATGGGAATCTGGATTAGCCCTGGGGCTGGCC CACAACCAGAATGGGAATCTAGATTAGCCCTGGGGCTGGCC Direct Loss 0.942658044801869 0 NA NA prediction 0.885316089603739 Functional Loss - PDE1B ENSG00000123360 CDS Human other chr12:54971106 chr12:54971106 synonymous SNV . 0 21 hm7G_associated_SNPs_4693 0 0 0 0 2 PDE1B chr12:54971129 5'GT 54971129 Upstream 24bp 4566 chr11 94351185 94351185 1 + G A COAD 94351185 + 94351165 94351205 41 GGATAATTGTGTACCGTGCTGGTGTAGGGGATGGTCAGCTG GGATAATTGTGTACCGTGCTAGTGTAGGGGATGGTCAGCTG Direct Loss 0.942651122013967 0 NA NA prediction 0.885302244027934 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94351185 chr11:94351185 nonsynonymous SNV 0.068 5 21 hm7G_associated_SNPs_4694 0 0 0 0 1 PIWIL4 chr11:94351120 3'AG 94351120 Downstream 66bp 4567 chr16 29857244 29857244 1 + G C BLCA 29857244 + 29857224 29857264 41 CTTGAGCGGCAGAAGATCCTGGACCAGTCAGAAGCCGAGAA CTTGAGCGGCAGAAGATCCTCGACCAGTCAGAAGCCGAGAA Direct Loss 0.942643647075967 0 NA NA prediction 0.885287294151935 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29857244 chr16:29857244 synonymous SNV . 0 21 hm7G_associated_SNPs_4695 0 0 0 0 2 MVP chr16:29857184 3'AG 29857184 Downstream 61bp 4568 chr16 29857244 29857244 1 + G C BLCA 29857244 + 29857224 29857264 41 CTTGAGCGGCAGAAGATCCTGGACCAGTCAGAAGCCGAGAA CTTGAGCGGCAGAAGATCCTCGACCAGTCAGAAGCCGAGAA Direct Loss 0.942643647075967 0 NA NA prediction 0.885287294151935 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29857244 chr16:29857244 synonymous SNV . 0 21 hm7G_associated_SNPs_4695 0 0 0 0 2 MVP chr16:29857300 5'GT 29857300 Upstream 57bp 4569 chr9 95838125 95838125 1 + G A UCEC 95838125 + 95838105 95838145 41 TCCAAGTCCTTCGTGGCAATGGTGCTTCCGTGGGGACCGTG TCCAAGTCCTTCGTGGCAATAGTGCTTCCGTGGGGACCGTG Direct Loss 0.942640014419769 0 NA NA prediction 0.885280028839538 Functional Loss - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95838125 chr9:95838125 nonsynonymous SNV 0.089 4 21 hm7G_associated_SNPs_4696 0 0 0 0 1 SUSD3 chr9:95838066 3'AG 95838066 Downstream 60bp 4570 chr2 241500749 241500749 1 + G A BLCA 241500749 + 241500729 241500769 41 TACACTTCTTGTTTGCAGATGGTGAAGAGCGCTCGCCCGGT TACACTTCTTGTTTGCAGATAGTGAAGAGCGCTCGCCCGGT Direct Loss 0.942621675074915 0 NA NA prediction 0.88524335014983 Functional Loss - DUSP28 ENSG00000188542 CDS Human protein_coding chr2:241500749 chr2:241500749 nonsynonymous SNV 0.760 1 21 hm7G_associated_SNPs_4697 0 0 0 0 1 DUSP28 chr2:241500747 3'AG 241500747 Downstream 3bp 4571 chr13 24465585 24465585 1 - C T rs369434681 24465585 - 24465565 24465605 41 CACCAGAGATGCTTACGTGAGCTCTGAGGACCAGGCCTCTG CACCAGAGATGCTTACGTGAACTCTGAGGACCAGGCCTCTG Direct Loss 0.942618866968461 0 NA NA prediction 0.885237733936923 Functional Loss - C1QTNF9B;PCOTH ENSG00000205863 CDS Human protein_coding chr13:24465585 chr13:24465585 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_4698 0 0 0 0 1 C1QTNF9B chr13:24465650 3'AG 24465650 Downstream 66bp 4572 chr19 6374890 6374890 1 + G A rs7540 6374890 + 6374870 6374910 41 GTCCTTCTTTGGGGAACGCCGGATTCCCCGGGGCCGGCGCA GTCCTTCTTTGGGGAACGCCAGATTCCCCGGGGCCGGCGCA Direct Loss 0.942613053829702 0 NA NA prediction 0.885226107659404 Functional Loss - ALKBH7 ENSG00000125652 CDS Human protein_coding chr19:6374890 chr19:6374890 nonsynonymous SNV 0.560 0 21 hm7G_associated_SNPs_4699 0 0 1 0 1 ALKBH7 chr19:6374822 3'AG 6374822 Downstream 69bp 4573 chr19 17690296 17690296 1 + G A LGG 17690296 + 17690276 17690316 41 GGCTTCCTCCCTCAGGTGGTGGACCGGGGGCTGCAGAAATC GGCTTCCTCCCTCAGGTGGTAGACCGGGGGCTGCAGAAATC Direct Loss 0.942607752975847 0 NA NA prediction 0.885215505951693 Functional Loss - COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17690296 chr19:17690296 synonymous SNV . 0 21 hm7G_associated_SNPs_4700 0 0 1 0 1 COLGALT1 chr19:17690291 3'AG 17690291 Downstream 6bp 4574 chr20 44644942 44644942 1 + G A SKCM 44644942 + 44644922 44644962 41 GGCGCGTGAGTTCCCGGAGTGAGTTGAACCAGGTGGACCAA GGCGCGTGAGTTCCCGGAGTAAGTTGAACCAGGTGGACCAA Direct Loss 0.942603491584764 0 NA NA prediction 0.885206983169528 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44644942 chr20:44644942 nonsynonymous SNV 0.265 0 21 hm7G_associated_SNPs_4701 0 0 0 0 1 MMP9 chr20:44644889 3'AG 44644889 Downstream 54bp 4575 chr14 104136555 104136555 1 + G T HNSC 104136555 + 104136535 104136575 41 ATAACCTTGCAGTCCTTTATGGTAAAAGAGGGAAGTACAAA ATAACCTTGCAGTCCTTTATTGTAAAAGAGGGAAGTACAAA Direct Loss 0.942582793786719 0 NA NA prediction 0.885165587573438 Functional Loss - KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104136555 chr14:104136555 nonsynonymous SNV 0.981 5 21 hm7G_associated_SNPs_4705 0 0 1 0 2 KLC1 chr14:104136519 3'AG 104136519 Downstream 37bp 4576 chr14 104136555 104136555 1 + G T HNSC 104136555 + 104136535 104136575 41 ATAACCTTGCAGTCCTTTATGGTAAAAGAGGGAAGTACAAA ATAACCTTGCAGTCCTTTATTGTAAAAGAGGGAAGTACAAA Direct Loss 0.942582793786719 0 NA NA prediction 0.885165587573438 Functional Loss - KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104136555 chr14:104136555 nonsynonymous SNV 0.981 5 21 hm7G_associated_SNPs_4705 0 0 1 0 2 KLC1 chr14:104136620 5'GT 104136620 Upstream 66bp 4577 chr10 105727567 105727567 1 + G A CESC 105727567 + 105727547 105727587 41 AGAAGAAGAAGAAGCAGTACGAACACGTGAAGAGGGACCTG AGAAGAAGAAGAAGCAGTACAAACACGTGAAGAGGGACCTG Direct Loss 0.942575745262802 0 NA NA prediction 0.885151490525604 Functional Loss - SLK ENSG00000065613 CDS Human protein_coding chr10:105727567 chr10:105727567 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4706 0 0 1 0 1 SLK chr10:105727653 5'GT 105727653 Upstream 87bp 4578 chr11 124845006 124845006 1 + G A CESC 124845006 + 124844986 124845026 41 TGGCAGCTTAGTGAAACTATGAAACAGGCACGTCACCGGCT TGGCAGCTTAGTGAAACTATAAAACAGGCACGTCACCGGCT Direct Loss 0.94256072539867 0 NA NA prediction 0.885121450797339 Functional Loss - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124845006 chr11:124845006 nonsynonymous SNV 0.979 1 21 hm7G_associated_SNPs_4707 0 0 0 0 2 CCDC15 chr11:124844992 3'AG 124844992 Downstream 15bp 4579 chr11 124845006 124845006 1 + G A CESC 124845006 + 124844986 124845026 41 TGGCAGCTTAGTGAAACTATGAAACAGGCACGTCACCGGCT TGGCAGCTTAGTGAAACTATAAAACAGGCACGTCACCGGCT Direct Loss 0.94256072539867 0 NA NA prediction 0.885121450797339 Functional Loss - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124845006 chr11:124845006 nonsynonymous SNV 0.979 1 21 hm7G_associated_SNPs_4707 0 0 0 0 2 CCDC15 chr11:124845105 5'GT 124845105 Upstream 100bp 4580 chr1 203472086 203472086 1 + G A UCEC 203472086 + 203472066 203472106 41 TACCTGTCAGACAACCTGCTGGATTCTATCCCGGGGCCTTT TACCTGTCAGACAACCTGCTAGATTCTATCCCGGGGCCTTT Direct Loss 0.94255830122097 0 NA NA prediction 0.885116602441939 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472086 chr1:203472086 synonymous SNV . 0 21 hm7G_associated_SNPs_4710 0 0 0 0 2 OPTC chr1:203472042 3'AG 203472042 Downstream 45bp 4581 chr1 203472086 203472086 1 + G A UCEC 203472086 + 203472066 203472106 41 TACCTGTCAGACAACCTGCTGGATTCTATCCCGGGGCCTTT TACCTGTCAGACAACCTGCTAGATTCTATCCCGGGGCCTTT Direct Loss 0.94255830122097 0 NA NA prediction 0.885116602441939 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472086 chr1:203472086 synonymous SNV . 0 21 hm7G_associated_SNPs_4710 0 0 0 0 2 OPTC chr1:203472137 5'GT 203472137 Upstream 52bp 4582 chr7 97369194 97369194 1 + G A CESC 97369194 + 97369174 97369214 41 CTTTGTTTTCAGTGGCTTATGAAAGGAGTGCAATGCAGAAT CTTTGTTTTCAGTGGCTTATAAAAGGAGTGCAATGCAGAAT Direct Loss 0.942556030026462 0 NA NA prediction 0.885112060052925 Functional Loss - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97369194 chr7:97369194 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_4711 0 0 0 0 1 TAC1 chr7:97369186 3'AG 97369186 Downstream 9bp 4583 chr5 177020659 177020659 1 + G A LUAD 177020659 + 177020639 177020679 41 ACCTTCCTCCAGGTCATCCTGGCCCGGCAGTATGGCTCCGA ACCTTCCTCCAGGTCATCCTAGCCCGGCAGTATGGCTCCGA Direct Loss 0.942556006496173 0 NA NA prediction 0.885112012992346 Functional Loss - TMED9 ENSG00000184840 CDS Human protein_coding chr5:177020659 chr5:177020659 synonymous SNV . 0 21 hm7G_associated_SNPs_4712 0 0 1 0 1 TMED9 chr5:177020651 3'AG 177020651 Downstream 9bp 4584 chr9 111701683 111701683 1 + G C CESC 111701683 + 111701663 111701703 41 AGTTGTGTTAGAGGACGTTTGATGGAAGTGAATGAAAACAT AGTTGTGTTAGAGGACGTTTCATGGAAGTGAATGAAAACAT Direct Loss 0.942553615809956 0 NA NA prediction 0.885107231619912 Functional Loss - FAM206A ENSG00000119328 CDS Human protein_coding chr9:111701683 chr9:111701683 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4713 0 0 1 0 2 FAM206A chr9:111701665 3'AG 111701665 Downstream 19bp 4585 chr9 111701683 111701683 1 + G C CESC 111701683 + 111701663 111701703 41 AGTTGTGTTAGAGGACGTTTGATGGAAGTGAATGAAAACAT AGTTGTGTTAGAGGACGTTTCATGGAAGTGAATGAAAACAT Direct Loss 0.942553615809956 0 NA NA prediction 0.885107231619912 Functional Loss - FAM206A ENSG00000119328 CDS Human protein_coding chr9:111701683 chr9:111701683 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4713 0 0 1 0 2 FAM206A chr9:111701734 5'GT 111701734 Upstream 52bp 4586 chr1 162546611 162546611 1 + G T SARC 162546611 + 162546591 162546631 41 AAGTAGCAGTTCTTCTTCTAGCTGGTGGGCAGGGGACAAGA AAGTAGCAGTTCTTCTTCTATCTGGTGGGCAGGGGACAAGA Direct Loss 0.9425529326906 0 NA NA prediction 0.885105865381201 Functional Loss - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162546611 chr1:162546611 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4714 0 0 1 0 1 UAP1 chr1:162546567 3'AG 162546567 Downstream 45bp 4587 chr20 42199271 42199271 1 + G A STAD 42199271 + 42199251 42199291 41 CTCCAGCTCTTCTTCCACCTGCAGCGGGAGCGCCGGTTCCT CTCCAGCTCTTCTTCCACCTACAGCGGGAGCGCCGGTTCCT Direct Loss 0.942548324748493 0 NA NA prediction 0.885096649496986 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42199271 chr20:42199271 synonymous SNV . 0 21 hm7G_associated_SNPs_4715 0 0 0 0 2 SGK2 chr20:42199257 3'AG 42199257 Downstream 15bp 4588 chr20 42199271 42199271 1 + G A STAD 42199271 + 42199251 42199291 41 CTCCAGCTCTTCTTCCACCTGCAGCGGGAGCGCCGGTTCCT CTCCAGCTCTTCTTCCACCTACAGCGGGAGCGCCGGTTCCT Direct Loss 0.942548324748493 0 NA NA prediction 0.885096649496986 Functional Loss - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42199271 chr20:42199271 synonymous SNV . 0 21 hm7G_associated_SNPs_4715 0 0 0 0 2 SGK2 chr20:42199369 5'GT 42199369 Upstream 99bp 4589 chr16 727794 727794 1 + G A SKCM 727794 + 727774 727814 41 TCTGCAGTGAGCTCCGAGGTGGGCCGGGCCGTGTGGCTGCG TCTGCAGTGAGCTCCGAGGTAGGCCGGGCCGTGTGGCTGCG Direct Loss 0.942547126238514 0 NA NA prediction 0.885094252477028 Functional Loss - RHBDL1 ENSG00000103269 CDS Human protein_coding chr16:727794 chr16:727794 synonymous SNV . 0 21 hm7G_associated_SNPs_4716 0 0 1 0 1 RHBDL1 chr16:727781 3'AG 727781 Downstream 14bp 4590 chr6 16143360 16143360 1 + G T LUAD 16143360 + 16143340 16143380 41 ATGGCATAGAATGGCATTCTGTGCGGGATAGCGAAGGGCAG ATGGCATAGAATGGCATTCTTTGCGGGATAGCGAAGGGCAG Direct Loss 0.942545475536229 0 NA NA prediction 0.885090951072458 Functional Loss - MYLIP ENSG00000007944 CDS Human protein_coding chr6:16143360 chr6:16143360 nonsynonymous SNV 0.949 1 21 hm7G_associated_SNPs_4717 0 0 1 0 1 MYLIP chr6:16143448 5'GT 16143448 Upstream 89bp 4591 chr2 68389725 68389725 1 + G A LUAD 68389725 + 68389705 68389745 41 CCAGGGCAATAGGAAGAATCGCTGGCAAAGGAGGAAAAACC CCAGGGCAATAGGAAGAATCACTGGCAAAGGAGGAAAAACC Direct Loss 0.942528769935621 0 NA NA prediction 0.885057539871241 Functional Loss - PNO1 ENSG00000115946 CDS Human protein_coding chr2:68389725 chr2:68389725 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_4718 0 0 1 0 2 PNO1 chr2:68389678 3'AG 68389678 Downstream 48bp 4592 chr2 68389725 68389725 1 + G A LUAD 68389725 + 68389705 68389745 41 CCAGGGCAATAGGAAGAATCGCTGGCAAAGGAGGAAAAACC CCAGGGCAATAGGAAGAATCACTGGCAAAGGAGGAAAAACC Direct Loss 0.942528769935621 0 NA NA prediction 0.885057539871241 Functional Loss - PNO1 ENSG00000115946 CDS Human protein_coding chr2:68389725 chr2:68389725 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_4718 0 0 1 0 2 PNO1 chr2:68389795 5'GT 68389795 Upstream 71bp 4593 chr20 62891328 62891328 1 + G A UCEC 62891328 + 62891308 62891348 41 TAATCTTGAACATGGGCGGTGCTGTGAGTGCTGGTGAAGAC TAATCTTGAACATGGGCGGTACTGTGAGTGCTGGTGAAGAC Direct Loss 0.942524521161036 0 NA NA prediction 0.885049042322072 Functional Loss - PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62891328 chr20:62891328 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4720 0 0 1 0 1 PCMTD2 chr20:62891295 3'AG 62891295 Downstream 34bp 4594 chr15 74623038 74623038 1 + G A OV 74623038 + 74623018 74623058 41 AAACTGCTGCTGAGTGAGCTGGATATGAAGAAACTGAGGGA AAACTGCTGCTGAGTGAGCTAGATATGAAGAAACTGAGGGA Direct Loss 0.942522438441343 0 NA NA prediction 0.885044876882687 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74623038 chr15:74623038 synonymous SNV . 0 21 hm7G_associated_SNPs_4721 0 0 0 0 1 CCDC33 chr15:74623092 5'GT 74623092 Upstream 55bp 4595 chr6 133137625 133137625 1 + G T UCEC 133137625 + 133137605 133137645 41 AAGCCCATCTTTGTGTGCTTGCATCCAACTGTGATGAGCCT AAGCCCATCTTTGTGTGCTTTCATCCAACTGTGATGAGCCT Direct Loss 0.942521518491712 0 NA NA prediction 0.885043036983424 Functional Loss - RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137625 chr6:133137625 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4723 0 0 1 2 2 RPS12 chr6:133137600 3'AG 133137600 Downstream 26bp 4596 chr6 133137625 133137625 1 + G T UCEC 133137625 + 133137605 133137645 41 AAGCCCATCTTTGTGTGCTTGCATCCAACTGTGATGAGCCT AAGCCCATCTTTGTGTGCTTTCATCCAACTGTGATGAGCCT Direct Loss 0.942521518491712 0 NA NA prediction 0.885043036983424 Functional Loss - RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137625 chr6:133137625 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4723 0 0 1 2 2 RPS12 chr6:133137702 5'GT 133137702 Upstream 78bp 4597 chr19 36276343 36276343 1 + G A STAD 36276343 + 36276323 36276363 41 ACACCGTCACACTGAGATCTGCCAAGAGCGAGGAGTCTCTG ACACCGTCACACTGAGATCTACCAAGAGCGAGGAGTCTCTG Direct Loss 0.942510860068739 0 NA NA prediction 0.885021720137478 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276343 chr19:36276343 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4724 0 0 1 0 2 ARHGAP33 chr19:36276311 3'AG 36276311 Downstream 33bp 4598 chr19 36276343 36276343 1 + G A STAD 36276343 + 36276323 36276363 41 ACACCGTCACACTGAGATCTGCCAAGAGCGAGGAGTCTCTG ACACCGTCACACTGAGATCTACCAAGAGCGAGGAGTCTCTG Direct Loss 0.942510860068739 0 NA NA prediction 0.885021720137478 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276343 chr19:36276343 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4724 0 0 1 0 2 ARHGAP33 chr19:36276385 5'GT 36276385 Upstream 43bp 4599 chr9 139701494 139701494 1 + G C BLCA 139701494 + 139701474 139701514 41 ACAACACCAGGATCAGCTTTGAGAACCGGGAGGAGGATATG ACAACACCAGGATCAGCTTTCAGAACCGGGAGGAGGATATG Direct Loss 0.942510453036129 0 NA NA prediction 0.885020906072258 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139701494 chr9:139701494 nonsynonymous SNV 0.765 3 21 hm7G_associated_SNPs_4725 0 0 1 0 2 CCDC183 chr9:139701422 3'AG 139701422 Downstream 73bp 4600 chr9 139701494 139701494 1 + G C BLCA 139701494 + 139701474 139701514 41 ACAACACCAGGATCAGCTTTGAGAACCGGGAGGAGGATATG ACAACACCAGGATCAGCTTTCAGAACCGGGAGGAGGATATG Direct Loss 0.942510453036129 0 NA NA prediction 0.885020906072258 Functional Loss - CCDC183 ENSG00000213213 CDS Human protein_coding chr9:139701494 chr9:139701494 nonsynonymous SNV 0.765 3 21 hm7G_associated_SNPs_4725 0 0 1 0 2 CCDC183 chr9:139701518 5'GT 139701518 Upstream 25bp 4601 chr19 11658662 11658662 1 + G T SARC 11658662 + 11658642 11658682 41 GGAGTGAAGTACGCAGAGAAGCAGGAGCGGAAATTCGAGCC GGAGTGAAGTACGCAGAGAATCAGGAGCGGAAATTCGAGCC Direct Loss 0.942503030194485 0 NA NA prediction 0.885006060388969 Functional Loss - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11658662 chr19:11658662 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4726 0 0 0 0 2 CNN1 chr19:11658612 3'AG 11658612 Downstream 51bp 4602 chr19 11658662 11658662 1 + G T SARC 11658662 + 11658642 11658682 41 GGAGTGAAGTACGCAGAGAAGCAGGAGCGGAAATTCGAGCC GGAGTGAAGTACGCAGAGAATCAGGAGCGGAAATTCGAGCC Direct Loss 0.942503030194485 0 NA NA prediction 0.885006060388969 Functional Loss - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11658662 chr19:11658662 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4726 0 0 0 0 2 CNN1 chr19:11658722 5'GT 11658722 Upstream 61bp 4603 chr17 34956605 34956605 1 + G C BLCA 34956605 + 34956585 34956625 41 CCACAGATTGGAGACATCCAGATGAGGCCCACGGAGCAGGT CCACAGATTGGAGACATCCACATGAGGCCCACGGAGCAGGT Direct Loss 0.94249994753456 0 NA NA prediction 0.88499989506912 Functional Loss - DHRS11 ENSG00000108272 CDS Human other chr17:34956605 chr17:34956605 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4727 0 0 1 0 1 DHRS11 chr17:34956591 3'AG 34956591 Downstream 15bp 4604 chr17 4436619 4436619 1 + G A LUAD 4436619 + 4436599 4436639 41 GCCACGCGCTGGTGCCGCCTGAAGACCCAGCGGGCCGACCC GCCACGCGCTGGTGCCGCCTAAAGACCCAGCGGGCCGACCC Direct Loss 0.942499049349016 0 NA NA prediction 0.884998098698031 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4436619 chr17:4436619 synonymous SNV . 0 21 hm7G_associated_SNPs_4728 0 0 0 0 1 SPNS2 chr17:4436538 3'AG 4436538 Downstream 82bp 4605 chr5 33462217 33462217 1 + G T BLCA 33462217 + 33462197 33462237 41 TTTATAGCCATGATGGTGATGATAAGAAAAGGCCAGTGATT TTTATAGCCATGATGGTGATTATAAGAAAAGGCCAGTGATT Direct Loss 0.942493504995013 0 NA NA prediction 0.884987009990025 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33462217 chr5:33462217 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4730 0 0 1 0 2 TARS chr5:33462204 3'AG 33462204 Downstream 14bp 4606 chr5 33462217 33462217 1 + G T BLCA 33462217 + 33462197 33462237 41 TTTATAGCCATGATGGTGATGATAAGAAAAGGCCAGTGATT TTTATAGCCATGATGGTGATTATAAGAAAAGGCCAGTGATT Direct Loss 0.942493504995013 0 NA NA prediction 0.884987009990025 Functional Loss - TARS ENSG00000113407 CDS Human protein_coding chr5:33462217 chr5:33462217 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4730 0 0 1 0 2 TARS chr5:33462308 5'GT 33462308 Upstream 92bp 4607 chr7 99751528 99751528 1 + G T UCEC 99751528 + 99751508 99751548 41 CACTGCTGGTGACGGTGTCAGGACAGAGGGTGTTTGTGGTG CACTGCTGGTGACGGTGTCATGACAGAGGGTGTTTGTGGTG Direct Loss 0.94249263899058 0 NA NA prediction 0.88498527798116 Functional Loss - LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751528 chr7:99751528 stopgain 1.000 1 21 hm7G_associated_SNPs_4731 0 0 1 0 1 LAMTOR4 chr7:99751490 3'AG 99751490 Downstream 39bp 4608 chr11 107969140 107969140 1 + G T UCEC 107969140 + 107969120 107969160 41 ATTCTTTTTGTAGAAAAAATGCAAAGGTTCAGAAAAGGGGT ATTCTTTTTGTAGAAAAAATTCAAAGGTTCAGAAAAGGGGT Direct Loss 0.942489768948811 0 NA NA prediction 0.884979537897622 Functional Loss - CUL5 ENSG00000166266 CDS Human protein_coding chr11:107969140 chr11:107969140 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4732 0 0 0 2 1 CUL5 chr11:107969133 3'AG 107969133 Downstream 8bp 4609 chr1 229438656 229438656 1 + G A UCEC 229438656 + 229438636 229438676 41 CAGGTATTCAGTACGGAGATGCTGCCTTGAGACAGCTGAGG CAGGTATTCAGTACGGAGATACTGCCTTGAGACAGCTGAGG Direct Loss 0.942483244925472 0 NA NA prediction 0.884966489850944 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438656 chr1:229438656 nonsynonymous SNV 0.975 1 21 hm7G_associated_SNPs_4733 0 0 1 2 2 RAB4A chr1:229438609 3'AG 229438609 Downstream 48bp 4610 chr1 229438656 229438656 1 + G A UCEC 229438656 + 229438636 229438676 41 CAGGTATTCAGTACGGAGATGCTGCCTTGAGACAGCTGAGG CAGGTATTCAGTACGGAGATACTGCCTTGAGACAGCTGAGG Direct Loss 0.942483244925472 0 NA NA prediction 0.884966489850944 Functional Loss - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229438656 chr1:229438656 nonsynonymous SNV 0.975 1 21 hm7G_associated_SNPs_4733 0 0 1 2 2 RAB4A chr1:229438736 5'GT 229438736 Upstream 81bp 4611 chr2 162081199 162081199 1 + G A rs145996964 162081199 + 162081179 162081219 41 GAATTTCATAAAATATGCATGCTAGCAAAAGCACAGAAAGA GAATTTCATAAAATATGCATACTAGCAAAAGCACAGAAAGA Direct Loss 0.942470329977315 0 NA NA prediction 0.884940659954629 Functional Loss - TANK ENSG00000136560 CDS Human protein_coding chr2:162081199 chr2:162081199 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4736 0 0 1 0 2 TANK chr2:162081142 3'AG 162081142 Downstream 58bp 4612 chr2 162081199 162081199 1 + G A rs145996964 162081199 + 162081179 162081219 41 GAATTTCATAAAATATGCATGCTAGCAAAAGCACAGAAAGA GAATTTCATAAAATATGCATACTAGCAAAAGCACAGAAAGA Direct Loss 0.942470329977315 0 NA NA prediction 0.884940659954629 Functional Loss - TANK ENSG00000136560 CDS Human protein_coding chr2:162081199 chr2:162081199 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4736 0 0 1 0 2 TANK chr2:162081257 5'GT 162081257 Upstream 59bp 4613 chr4 1369191 1369191 1 + G A COAD 1369191 + 1369171 1369211 41 GAAAGACACAGTTGTGCGGTGCTTGCGGACGAGGACGAGGA GAAAGACACAGTTGTGCGGTACTTGCGGACGAGGACGAGGA Direct Loss 0.942465477221056 0 NA NA prediction 0.884930954442112 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1369191 chr4:1369191 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_4738 0 0 0 0 1 UVSSA chr4:1369152 3'AG 1369152 Downstream 40bp 4614 chr19 42819577 42819577 1 + G A UCEC 42819577 + 42819557 42819597 41 CTTATAAAATGTTCATGGCCGCAGCAGGAGTAGAGGGTGAG CTTATAAAATGTTCATGGCCACAGCAGGAGTAGAGGGTGAG Direct Loss 0.94246219067637 0 NA NA prediction 0.884924381352741 Functional Loss - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42819577 chr19:42819577 nonsynonymous SNV 0.986 3 21 hm7G_associated_SNPs_4739 0 0 1 0 1 TMEM145 chr19:42819524 3'AG 42819524 Downstream 54bp 4615 chr13 61060035 61060035 1 + G A KIRP 61060035 + 61060015 61060055 41 CAAATGATAATGATGAATTTGAAAAGCAAAGGACGGCTGCT CAAATGATAATGATGAATTTAAAAAGCAAAGGACGGCTGCT Direct Loss 0.942461354126789 0 NA NA prediction 0.884922708253577 Functional Loss - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61060035 chr13:61060035 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4740 0 0 0 0 2 TDRD3 chr13:61059936 3'AG 61059936 Downstream 100bp 4616 chr13 61060035 61060035 1 + G A KIRP 61060035 + 61060015 61060055 41 CAAATGATAATGATGAATTTGAAAAGCAAAGGACGGCTGCT CAAATGATAATGATGAATTTAAAAAGCAAAGGACGGCTGCT Direct Loss 0.942461354126789 0 NA NA prediction 0.884922708253577 Functional Loss - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61060035 chr13:61060035 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4740 0 0 0 0 2 TDRD3 chr13:61060082 5'GT 61060082 Upstream 48bp 4617 chr12 64868016 64868016 1 + G T LUAD 64868016 + 64867996 64868036 41 TTTTTTAATCTTAGCACCCTGATATGTATGAGAGAGCAGTG TTTTTTAATCTTAGCACCCTTATATGTATGAGAGAGCAGTG Direct Loss 0.942445280550118 0 NA NA prediction 0.884890561100236 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64868016 chr12:64868016 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_4741 0 0 1 0 1 TBK1 chr12:64868010 3'AG 64868010 Downstream 7bp 4618 chr11 1974029 1974029 1 + G A rs4930142 1974029 + 1974009 1974049 41 CAGGCTCTAACAAGAGAAGAGATCACAGAAACGTGAGGATC CAGGCTCTAACAAGAGAAGAAATCACAGAAACGTGAGGATC Direct Loss 0.94243856838596 0 NA NA prediction 0.884877136771921 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1974029 chr11:1974029 nonsynonymous SNV 0.080 0 21 hm7G_associated_SNPs_4743 0 0 1 0 2 MRPL23 chr11:1974012 3'AG 1974012 Downstream 18bp 4619 chr11 1974029 1974029 1 + G A rs4930142 1974029 + 1974009 1974049 41 CAGGCTCTAACAAGAGAAGAGATCACAGAAACGTGAGGATC CAGGCTCTAACAAGAGAAGAAATCACAGAAACGTGAGGATC Direct Loss 0.94243856838596 0 NA NA prediction 0.884877136771921 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1974029 chr11:1974029 nonsynonymous SNV 0.080 0 21 hm7G_associated_SNPs_4743 0 0 1 0 2 MRPL23 chr11:1974085 5'GT 1974085 Upstream 57bp 4620 chr17 21208440 21208440 1 + G A DLBC 21208440 + 21208420 21208460 41 TGGAGCCTGGGCATCACCATGGTACTGTGGGGGGCCAGGGC TGGAGCCTGGGCATCACCATAGTACTGTGGGGGGCCAGGGC Direct Loss 0.94243512120328 0 NA NA prediction 0.884870242406561 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21208440 chr17:21208440 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_4745 0 0 1 0 2 MAP2K3 chr17:21208363 3'AG 21208363 Downstream 78bp 4621 chr17 21208440 21208440 1 + G A DLBC 21208440 + 21208420 21208460 41 TGGAGCCTGGGCATCACCATGGTACTGTGGGGGGCCAGGGC TGGAGCCTGGGCATCACCATAGTACTGTGGGGGGCCAGGGC Direct Loss 0.94243512120328 0 NA NA prediction 0.884870242406561 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21208440 chr17:21208440 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_4745 0 0 1 0 2 MAP2K3 chr17:21208440 5'GT 21208440 Upstream 1bp 4622 chr20 42089428 42089428 1 + G T LUAD 42089428 + 42089408 42089448 41 GCAAATCTAAGCCCAAGTCTGATCGGGGCTCCCATTCACAT GCAAATCTAAGCCCAAGTCTTATCGGGGCTCCCATTCACAT Direct Loss 0.942429405908529 0 NA NA prediction 0.884858811817057 Functional Loss - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089428 chr20:42089428 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_4746 0 0 0 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 86bp 4623 chrX 13607758 13607758 1 + G A SKCM 13607758 + 13607738 13607778 41 ACTGGCCTGCTGCTACGGCTGGAGAAGAAACAGCAAGGGAG ACTGGCCTGCTGCTACGGCTAGAGAAGAAACAGCAAGGGAG Direct Loss 0.942422751918873 0 NA NA prediction 0.884845503837747 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607758 chrX:13607758 stopgain 1.000 1 21 hm7G_associated_SNPs_4748 0 0 0 0 3 EGFL6 chrX:13607675 3'AG 13607675 Downstream 84bp 4624 chrX 13607758 13607758 1 + G A SKCM 13607758 + 13607738 13607778 41 ACTGGCCTGCTGCTACGGCTGGAGAAGAAACAGCAAGGGAG ACTGGCCTGCTGCTACGGCTAGAGAAGAAACAGCAAGGGAG Direct Loss 0.942422751918873 0 NA NA prediction 0.884845503837747 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607758 chrX:13607758 stopgain 1.000 1 21 hm7G_associated_SNPs_4748 0 0 0 0 3 EGFL6 chrX:13607681 3'AG 13607681 Downstream 78bp 4625 chrX 13607758 13607758 1 + G A SKCM 13607758 + 13607738 13607778 41 ACTGGCCTGCTGCTACGGCTGGAGAAGAAACAGCAAGGGAG ACTGGCCTGCTGCTACGGCTAGAGAAGAAACAGCAAGGGAG Direct Loss 0.942422751918873 0 NA NA prediction 0.884845503837747 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607758 chrX:13607758 stopgain 1.000 1 21 hm7G_associated_SNPs_4748 0 0 0 0 3 EGFL6 chrX:13607787 5'GT 13607787 Upstream 30bp 4626 chr20 61428556 61428556 1 + G C BLCA 61428556 + 61428536 61428576 41 AAGGTCATCTGGGACCATCTGAGCACCATGTACGACATGCA AAGGTCATCTGGGACCATCTCAGCACCATGTACGACATGCA Direct Loss 0.942404826947 0 NA NA prediction 0.884809653893999 Functional Loss - MRGBP ENSG00000101189 CDS Human protein_coding chr20:61428556 chr20:61428556 synonymous SNV . 0 21 hm7G_associated_SNPs_4750 0 0 1 0 2 MRGBP chr20:61428462 3'AG 61428462 Downstream 95bp 4627 chr20 61428556 61428556 1 + G C BLCA 61428556 + 61428536 61428576 41 AAGGTCATCTGGGACCATCTGAGCACCATGTACGACATGCA AAGGTCATCTGGGACCATCTCAGCACCATGTACGACATGCA Direct Loss 0.942404826947 0 NA NA prediction 0.884809653893999 Functional Loss - MRGBP ENSG00000101189 CDS Human protein_coding chr20:61428556 chr20:61428556 synonymous SNV . 0 21 hm7G_associated_SNPs_4750 0 0 1 0 2 MRGBP chr20:61428583 5'GT 61428583 Upstream 28bp 4628 chr20 62374258 62374258 1 + G T SARC 62374258 + 62374238 62374278 41 CCGCGGCGACGCGAAGAAGTGCCGGAAGGTGTATGGCATGG CCGCGGCGACGCGAAGAAGTTCCGGAAGGTGTATGGCATGG Direct Loss 0.942400262877341 0 NA NA prediction 0.884800525754682 Functional Loss - SLC2A4RG ENSG00000125520 CDS Human protein_coding chr20:62374258 chr20:62374258 nonsynonymous SNV 0.979 2 21 hm7G_associated_SNPs_4751 0 0 1 0 1 SLC2A4RG chr20:62374232 3'AG 62374232 Downstream 27bp 4629 chr19 49102458 49102458 1 + G A COAD 49102458 + 49102438 49102478 41 AGCCTTCGATCGTGCCTACCGCAAGCAGATGCGGGGGATGC AGCCTTCGATCGTGCCTACCACAAGCAGATGCGGGGGATGC Direct Loss 0.942389585370797 0 NA NA prediction 0.884779170741594 Functional Loss - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49102458 chr19:49102458 nonsynonymous SNV 0.019 2 21 hm7G_associated_SNPs_4752 0 0 0 0 1 SULT2B1 chr19:49102392 3'AG 49102392 Downstream 67bp 4630 chr12 121098607 121098607 1 + G A SKCM 121098607 + 121098587 121098627 41 CTGGCAGAGACAGCAGATATGATTGGTGTAAAGGAACTGCG CTGGCAGAGACAGCAGATATAATTGGTGTAAAGGAACTGCG Direct Loss 0.94237361251144 0 NA NA prediction 0.884747225022881 Functional Loss - CABP1 ENSG00000157782 CDS Human protein_coding chr12:121098607 chr12:121098607 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4753 0 0 1 0 2 CABP1 chr12:121098534 3'AG 121098534 Downstream 74bp 4631 chr12 121098607 121098607 1 + G A SKCM 121098607 + 121098587 121098627 41 CTGGCAGAGACAGCAGATATGATTGGTGTAAAGGAACTGCG CTGGCAGAGACAGCAGATATAATTGGTGTAAAGGAACTGCG Direct Loss 0.94237361251144 0 NA NA prediction 0.884747225022881 Functional Loss - CABP1 ENSG00000157782 CDS Human protein_coding chr12:121098607 chr12:121098607 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4753 0 0 1 0 2 CABP1 chr12:121098643 5'GT 121098643 Upstream 37bp 4632 chr9 12821465 12821465 1 + G T LUAD 12821465 + 12821445 12821485 41 ATCGAGTCCATCAAGTGGATGATCGAAGAAAAAGCCACCAT ATCGAGTCCATCAAGTGGATTATCGAAGAAAAAGCCACCAT Direct Loss 0.942365676116968 0 NA NA prediction 0.884731352233936 Functional Loss - LURAP1L ENSG00000153714 CDS Human protein_coding chr9:12821465 chr9:12821465 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_4754 0 0 0 0 1 LURAP1L chr9:12821385 3'AG 12821385 Downstream 81bp 4633 chr12 57863310 57863310 1 + G T LUAD 57863310 + 57863290 57863330 41 ACAGTGGTGTGGAAATGACTGGCAATGCAGGGGGCAGCACT ACAGTGGTGTGGAAATGACTTGCAATGCAGGGGGCAGCACT Direct Loss 0.942355454600341 0 NA NA prediction 0.884710909200682 Functional Loss - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57863310 chr12:57863310 nonsynonymous SNV 0.544 3 21 hm7G_associated_SNPs_4755 0 0 0 0 1 GLI1 chr12:57863214 3'AG 57863214 Downstream 97bp 4634 chr19 8386554 8386554 1 + G C ACC 8386554 + 8386534 8386574 41 CTCCAGGTCACCAAGGTCCTGGGCAGGACCGGTTCTCAGGG CTCCAGGTCACCAAGGTCCTCGGCAGGACCGGTTCTCAGGG Direct Loss 0.94235371520314 0 NA NA prediction 0.884707430406281 Functional Loss - RPS28 ENSG00000233927 CDS Human protein_coding chr19:8386554 chr19:8386554 synonymous SNV . 0 21 hm7G_associated_SNPs_4756 0 0 1 0 2 RPS28 chr19:8386540 3'AG 8386540 Downstream 15bp 4635 chr19 8386554 8386554 1 + G C ACC 8386554 + 8386534 8386574 41 CTCCAGGTCACCAAGGTCCTGGGCAGGACCGGTTCTCAGGG CTCCAGGTCACCAAGGTCCTCGGCAGGACCGGTTCTCAGGG Direct Loss 0.94235371520314 0 NA NA prediction 0.884707430406281 Functional Loss - RPS28 ENSG00000233927 CDS Human protein_coding chr19:8386554 chr19:8386554 synonymous SNV . 0 21 hm7G_associated_SNPs_4756 0 0 1 0 2 RPS28 chr19:8386587 5'GT 8386587 Upstream 34bp 4636 chr6 42931107 42931107 1 + G A KIRC 42931107 + 42931087 42931127 41 ACAACATCAGTGCTGATAGTGAACAACAAGGCCCACATGGT ACAACATCAGTGCTGATAGTAAACAACAAGGCCCACATGGT Direct Loss 0.942343581955257 0 NA NA prediction 0.884687163910513 Functional Loss - CNPY3-GNMT;GNMT ENSG00000124713 CDS Human protein_coding chr6:42931107 chr6:42931107 synonymous SNV . 0 21 hm7G_associated_SNPs_4757 0 0 0 0 1 CNPY3-GNMT;GNMT chr6:42931187 5'GT 42931187 Upstream 81bp 4637 chrX 13635940 13635940 1 + G T BLCA 13635940 + 13635920 13635960 41 CTTGCTCACAAAAACAGCATGAAAAAGAAGGCAAAAATTAA CTTGCTCACAAAAACAGCATTAAAAAGAAGGCAAAAATTAA Direct Loss 0.942340275621075 0 NA NA prediction 0.88468055124215 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13635940 chrX:13635940 nonsynonymous SNV 0.864 0 21 hm7G_associated_SNPs_4758 0 0 0 0 1 EGFL6 chrX:13635849 3'AG 13635849 Downstream 92bp 4638 chr7 139094326 139094326 1 + G C BRCA 139094326 + 139094306 139094346 41 AAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAAACCAGGA AAGAGAGTCGTAGCTGAGAACCAGGAGAAAAGAAACCAGGA Direct Loss 0.94234002161648 0 NA NA prediction 0.88468004323296 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094326 chr7:139094326 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4759 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 18bp 4639 chr7 139094326 139094326 1 + G C BRCA 139094326 + 139094306 139094346 41 AAGAGAGTCGTAGCTGAGAAGCAGGAGAAAAGAAACCAGGA AAGAGAGTCGTAGCTGAGAACCAGGAGAAAAGAAACCAGGA Direct Loss 0.94234002161648 0 NA NA prediction 0.88468004323296 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094326 chr7:139094326 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4759 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 75bp 4640 chr15 25221503 25221503 1 + G T LIHC 25221503 + 25221483 25221523 41 GAAAAGCGGGTTTTGGGTCTGGTGTTGCTGCGTGGGGAGAA GAAAAGCGGGTTTTGGGTCTTGTGTTGCTGCGTGGGGAGAA Direct Loss 0.942335546127031 0 NA NA prediction 0.884671092254062 Functional Loss - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25221503 chr15:25221503 synonymous SNV . 0 21 hm7G_associated_SNPs_4760 0 0 1 0 2 SNRPN chr15:25221452 3'AG 25221452 Downstream 52bp 4641 chr15 25221503 25221503 1 + G T LIHC 25221503 + 25221483 25221523 41 GAAAAGCGGGTTTTGGGTCTGGTGTTGCTGCGTGGGGAGAA GAAAAGCGGGTTTTGGGTCTTGTGTTGCTGCGTGGGGAGAA Direct Loss 0.942335546127031 0 NA NA prediction 0.884671092254062 Functional Loss - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25221503 chr15:25221503 synonymous SNV . 0 21 hm7G_associated_SNPs_4760 0 0 1 0 2 SNRPN chr15:25221563 5'GT 25221563 Upstream 61bp 4642 chr19 3522996 3522996 1 + G A LIHC 3522996 + 3522976 3523016 41 CCCTGCCTCGCCATGGACCAGGACTATGAGCGGCGCCTGCT CCCTGCCTCGCCATGGACCAAGACTATGAGCGGCGCCTGCT Direct Loss 0.942329270964803 0 NA NA prediction 0.884658541929606 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3522996 chr19:3522996 synonymous SNV . 0 21 hm7G_associated_SNPs_4761 0 0 1 0 1 FZR1 chr19:3523056 5'GT 3523056 Upstream 61bp 4643 chr19 11558364 11558364 1 + G A UCEC 11558364 + 11558344 11558384 41 GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGCTGA GAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGAAGAGGCTGA Direct Loss 0.942328704957274 0 NA NA prediction 0.884657409914548 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11558364 chr19:11558364 synonymous SNV . 0 21 hm7G_associated_SNPs_4762 0 0 1 0 1 PRKCSH chr19:11558433 5'GT 11558433 Upstream 70bp 4644 chr11 62505762 62505762 1 + G A PRAD 62505762 + 62505742 62505782 41 TCTCCATCATCTTCCAAGATGCCAACGTCCGGCGGTACCTC TCTCCATCATCTTCCAAGATACCAACGTCCGGCGGTACCTC Direct Loss 0.942324765497841 0 NA NA prediction 0.884649530995682 Functional Loss - TTC9C ENSG00000162222 CDS Human protein_coding chr11:62505762 chr11:62505762 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_4763 0 0 1 0 1 TTC9C chr11:62505760 3'AG 62505760 Downstream 3bp 4645 chr1 153945541 153945541 1 + G C LUSC 153945541 + 153945521 153945561 41 GGAAGAAGGAGTACATTGATGGGCTGGAGAGCAGGTACGCC GGAAGAAGGAGTACATTGATCGGCTGGAGAGCAGGTACGCC Direct Loss 0.94232141291547 0 NA NA prediction 0.88464282583094 Functional Loss - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153945541 chr1:153945541 nonsynonymous SNV 0.981 3 21 hm7G_associated_SNPs_4764 0 0 0 0 2 CREB3L4 chr1:153945448 3'AG 153945448 Downstream 94bp 4646 chr1 153945541 153945541 1 + G C LUSC 153945541 + 153945521 153945561 41 GGAAGAAGGAGTACATTGATGGGCTGGAGAGCAGGTACGCC GGAAGAAGGAGTACATTGATCGGCTGGAGAGCAGGTACGCC Direct Loss 0.94232141291547 0 NA NA prediction 0.88464282583094 Functional Loss - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153945541 chr1:153945541 nonsynonymous SNV 0.981 3 21 hm7G_associated_SNPs_4764 0 0 0 0 2 CREB3L4 chr1:153945554 5'GT 153945554 Upstream 14bp 4647 chr1 111434048 111434048 1 + G A COAD 111434048 + 111434028 111434068 41 GGCATGGGCATGAGTAGCTTGAAACTGCTGAAGTATGTCCT GGCATGGGCATGAGTAGCTTAAAACTGCTGAAGTATGTCCT Direct Loss 0.94229150671984 0 NA NA prediction 0.88458301343968 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111434048 chr1:111434048 synonymous SNV . 0 21 hm7G_associated_SNPs_4768 0 0 0 0 2 CD53 chr1:111434014 3'AG 111434014 Downstream 35bp 4648 chr1 111434048 111434048 1 + G A COAD 111434048 + 111434028 111434068 41 GGCATGGGCATGAGTAGCTTGAAACTGCTGAAGTATGTCCT GGCATGGGCATGAGTAGCTTAAAACTGCTGAAGTATGTCCT Direct Loss 0.94229150671984 0 NA NA prediction 0.88458301343968 Functional Loss - CD53 ENSG00000143119 CDS Human protein_coding chr1:111434048 chr1:111434048 synonymous SNV . 0 21 hm7G_associated_SNPs_4768 0 0 0 0 2 CD53 chr1:111434093 5'GT 111434093 Upstream 46bp 4649 chr6 53660207 53660207 1 + G A STAD 53660207 + 53660187 53660227 41 GCCAACCAGCTCCGCGAGCTGCCCGAGGTAAGGGTCCGGCC GCCAACCAGCTCCGCGAGCTACCCGAGGTAAGGGTCCGGCC Direct Loss 0.94228957186928 0 NA NA prediction 0.88457914373856 Functional Loss - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53660207 chr6:53660207 synonymous SNV . 0 21 hm7G_associated_SNPs_4769 0 0 0 0 1 LRRC1 chr6:53660213 5'GT 53660213 Upstream 7bp 4650 chr7 128503072 128503072 1 + G T rs112994393 128503072 + 128503052 128503092 41 CGCCATCCCAATTTCCTGGTGGTGGAGAAGGATACAACCAT CGCCATCCCAATTTCCTGGTTGTGGAGAAGGATACAACCAT Direct Loss 0.94228944580282 0 NA NA prediction 0.884578891605639 Functional Loss - ATP6V1F ENSG00000128524 CDS Human protein_coding chr7:128503072 chr7:128503072 synonymous SNV . 0 21 hm7G_associated_SNPs_4770 0 0 1 0 1 ATP6V1F chr7:128503116 5'GT 128503116 Upstream 45bp 4651 chr22 41970815 41970815 1 + G T CHOL 41970815 + 41970795 41970835 41 ATCCCTCCCAAGAACCAGAAGTTCCAGGCCGTGGAGGTGGT ATCCCTCCCAAGAACCAGAATTTCCAGGCCGTGGAGGTGGT Direct Loss 0.942288893600944 0 NA NA prediction 0.884577787201887 Functional Loss - CSDC2 ENSG00000172346 CDS Human protein_coding chr22:41970815 chr22:41970815 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4771 0 0 0 0 1 CSDC2 chr22:41970737 3'AG 41970737 Downstream 79bp 4652 chr18 47917639 47917639 1 + G C CESC 47917639 + 47917619 47917659 41 ATCTCTATCACAGATTTATTGATGAAGAAACGAAGGATACC ATCTCTATCACAGATTTATTCATGAAGAAACGAAGGATACC Direct Loss 0.942272264437 0 NA NA prediction 0.884544528874001 Functional Loss - SKA1 ENSG00000154839 CDS Human protein_coding chr18:47917639 chr18:47917639 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_4772 0 0 1 0 1 SKA1 chr18:47917663 5'GT 47917663 Upstream 25bp 4653 chr12 81111256 81111256 1 + G C CESC 81111256 + 81111236 81111276 41 GAGAGCCTGCAGGAGTTGCTGAGAGAGCAGGTGGAGAACTA GAGAGCCTGCAGGAGTTGCTCAGAGAGCAGGTGGAGAACTA Direct Loss 0.942270615454323 0 NA NA prediction 0.884541230908645 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81111256 chr12:81111256 synonymous SNV . 0 21 hm7G_associated_SNPs_4773 0 0 0 0 1 MYF5 chr12:81111343 5'GT 81111343 Upstream 88bp 4654 chr7 75694175 75694175 1 + G T LUSC 75694175 + 75694155 75694195 41 CGCTTTGTCTTCTCCCTTGTGGATGCAATGAATGGAAAGGA CGCTTTGTCTTCTCCCTTGTTGATGCAATGAATGGAAAGGA Direct Loss 0.942268775825669 0 NA NA prediction 0.884537551651337 Functional Loss - MDH2 ENSG00000146701 CDS Human protein_coding chr7:75694175 chr7:75694175 synonymous SNV . 0 21 hm7G_associated_SNPs_4774 0 0 1 0 2 MDH2 chr7:75694120 3'AG 75694120 Downstream 56bp 4655 chr7 75694175 75694175 1 + G T LUSC 75694175 + 75694155 75694195 41 CGCTTTGTCTTCTCCCTTGTGGATGCAATGAATGGAAAGGA CGCTTTGTCTTCTCCCTTGTTGATGCAATGAATGGAAAGGA Direct Loss 0.942268775825669 0 NA NA prediction 0.884537551651337 Functional Loss - MDH2 ENSG00000146701 CDS Human protein_coding chr7:75694175 chr7:75694175 synonymous SNV . 0 21 hm7G_associated_SNPs_4774 0 0 1 0 2 MDH2 chr7:75694271 5'GT 75694271 Upstream 97bp 4656 chr6 110083342 110083342 1 + G T LIHC 110083342 + 110083322 110083362 41 AATGTGATTGCAGAAAGTGTGGTGAAGAAAACAGGTTTCTT AATGTGATTGCAGAAAGTGTTGTGAAGAAAACAGGTTTCTT Direct Loss 0.942266991087564 0 NA NA prediction 0.884533982175127 Functional Loss - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110083342 chr6:110083342 synonymous SNV . 0 21 hm7G_associated_SNPs_4775 0 0 1 0 2 FIG4 chr6:110083294 3'AG 110083294 Downstream 49bp 4657 chr6 110083342 110083342 1 + G T LIHC 110083342 + 110083322 110083362 41 AATGTGATTGCAGAAAGTGTGGTGAAGAAAACAGGTTTCTT AATGTGATTGCAGAAAGTGTTGTGAAGAAAACAGGTTTCTT Direct Loss 0.942266991087564 0 NA NA prediction 0.884533982175127 Functional Loss - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110083342 chr6:110083342 synonymous SNV . 0 21 hm7G_associated_SNPs_4775 0 0 1 0 2 FIG4 chr6:110083410 5'GT 110083410 Upstream 69bp 4658 chr12 121132746 121132746 1 + G A CESC 121132746 + 121132726 121132766 41 AGCATCAGAAAGGGGAAGCTGAGTGTCCAGGGGGAGGTGTC AGCATCAGAAAGGGGAAGCTAAGTGTCCAGGGGGAGGTGTC Direct Loss 0.942265736486259 0 NA NA prediction 0.884531472972518 Functional Loss - MLEC ENSG00000110917 CDS Human protein_coding chr12:121132746 chr12:121132746 synonymous SNV . 0 21 hm7G_associated_SNPs_4776 0 0 1 0 1 MLEC chr12:121132803 5'GT 121132803 Upstream 58bp 4659 chr19 34890150 34890150 1 + G A LUSC 34890150 + 34890130 34890170 41 TTGGCCCAGACAGAGGCCCTGATGAGGGGAAAATCGACGGA TTGGCCCAGACAGAGGCCCTAATGAGGGGAAAATCGACGGA Direct Loss 0.942254583684532 0 NA NA prediction 0.884509167369064 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34890150 chr19:34890150 synonymous SNV . 0 21 hm7G_associated_SNPs_4778 0 0 1 0 2 GPI chr19:34890112 3'AG 34890112 Downstream 39bp 4660 chr19 34890150 34890150 1 + G A LUSC 34890150 + 34890130 34890170 41 TTGGCCCAGACAGAGGCCCTGATGAGGGGAAAATCGACGGA TTGGCCCAGACAGAGGCCCTAATGAGGGGAAAATCGACGGA Direct Loss 0.942254583684532 0 NA NA prediction 0.884509167369064 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34890150 chr19:34890150 synonymous SNV . 0 21 hm7G_associated_SNPs_4778 0 0 1 0 2 GPI chr19:34890240 5'GT 34890240 Upstream 91bp 4661 chr21 45096684 45096684 1 + G A BLCA 45096684 + 45096664 45096704 41 ATCAGTCTCCTTTTGTGCCTGAAGAGACGATGGAGGAACAG ATCAGTCTCCTTTTGTGCCTAAAGAGACGATGGAGGAACAG Direct Loss 0.942245324359186 0 NA NA prediction 0.884490648718371 Functional Loss - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45096684 chr21:45096684 nonsynonymous SNV 0.251 2 21 hm7G_associated_SNPs_4780 0 0 1 0 1 RRP1B chr21:45096614 3'AG 45096614 Downstream 71bp 4662 chr8 87549859 87549859 1 + G T PAAD 87549859 + 87549839 87549879 41 TCTGATGGAAACTGGCTAATGGTTCATCGGACAGAGGTGAA TCTGATGGAAACTGGCTAATTGTTCATCGGACAGAGGTGAA Direct Loss 0.942244635964822 0 NA NA prediction 0.884489271929643 Functional Loss - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87549859 chr8:87549859 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4781 0 0 1 0 2 CPNE3 chr8:87549791 3'AG 87549791 Downstream 69bp 4663 chr8 87549859 87549859 1 + G T PAAD 87549859 + 87549839 87549879 41 TCTGATGGAAACTGGCTAATGGTTCATCGGACAGAGGTGAA TCTGATGGAAACTGGCTAATTGTTCATCGGACAGAGGTGAA Direct Loss 0.942244635964822 0 NA NA prediction 0.884489271929643 Functional Loss - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87549859 chr8:87549859 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4781 0 0 1 0 2 CPNE3 chr8:87549874 5'GT 87549874 Upstream 16bp 4664 chr1 110996666 110996666 1 + G A UCEC 110996666 + 110996646 110996686 41 GGGCTGCGGATGTGCACCCCGCTGGGGCGGGAAGGCGAGGA GGGCTGCGGATGTGCACCCCACTGGGGCGGGAAGGCGAGGA Direct Loss 0.942244566052023 0 NA NA prediction 0.884489132104047 Functional Loss - PROK1 ENSG00000143125 CDS Human protein_coding chr1:110996666 chr1:110996666 synonymous SNV . 0 21 hm7G_associated_SNPs_4782 0 0 0 0 2 PROK1 chr1:110996583 3'AG 110996583 Downstream 84bp 4665 chr1 110996666 110996666 1 + G A UCEC 110996666 + 110996646 110996686 41 GGGCTGCGGATGTGCACCCCGCTGGGGCGGGAAGGCGAGGA GGGCTGCGGATGTGCACCCCACTGGGGCGGGAAGGCGAGGA Direct Loss 0.942244566052023 0 NA NA prediction 0.884489132104047 Functional Loss - PROK1 ENSG00000143125 CDS Human protein_coding chr1:110996666 chr1:110996666 synonymous SNV . 0 21 hm7G_associated_SNPs_4782 0 0 0 0 2 PROK1 chr1:110996708 5'GT 110996708 Upstream 43bp 4666 chr1 32503449 32503449 1 + G T STAD 32503449 + 32503429 32503469 41 TTTGTAGGGGCCGTGGTGTTGGACCACCTCGGGGGGCTTTG TTTGTAGGGGCCGTGGTGTTTGACCACCTCGGGGGGCTTTG Direct Loss 0.942238796129768 0 NA NA prediction 0.884477592259536 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32503449 chr1:32503449 stopgain 1.000 0 21 hm7G_associated_SNPs_4783 0 0 1 0 1 KHDRBS1 chr1:32503436 3'AG 32503436 Downstream 14bp 4667 chr9 131296046 131296046 1 + G T COAD 131296046 + 131296026 131296066 41 CTCTATGTTCTCAGAAACAAGGCGAGGAGGAAGTGGCCTCT CTCTATGTTCTCAGAAACAATGCGAGGAGGAAGTGGCCTCT Direct Loss 0.942231262218161 0 NA NA prediction 0.884462524436322 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131296046 chr9:131296046 nonsynonymous SNV 0.961 4 21 hm7G_associated_SNPs_4784 0 0 1 0 1 GLE1 chr9:131296040 3'AG 131296040 Downstream 7bp 4668 chr3 183898974 183898974 1 + G A CESC 183898974 + 183898954 183898994 41 TGAATGACAAGATTGTTATTGAAAAGCAGGGCAAAGGCACA TGAATGACAAGATTGTTATTAAAAAGCAGGGCAAAGGCACA Direct Loss 0.942231214559951 0 NA NA prediction 0.884462429119902 Functional Loss - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183898974 chr3:183898974 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4785 0 0 1 0 1 AP2M1 chr3:183899014 5'GT 183899014 Upstream 41bp 4669 chr6 16290820 16290820 1 + G T UCEC 16290820 + 16290800 16290840 41 ATGAGCTCTGACACCGCCATGAACAAGCACGCAGGAGGAGT ATGAGCTCTGACACCGCCATTAACAAGCACGCAGGAGGAGT Direct Loss 0.942225554853431 0 NA NA prediction 0.884451109706863 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16290820 chr6:16290820 nonsynonymous SNV 0.969 3 21 hm7G_associated_SNPs_4786 0 0 1 0 1 GMPR chr6:16290852 5'GT 16290852 Upstream 33bp 4670 chr1 231402028 231402028 1 + G T SARC 231402028 + 231402008 231402048 41 TTATGGTACTATTAGGGGTTGCTGAAAGCCAGAAAGATTCT TTATGGTACTATTAGGGGTTTCTGAAAGCCAGAAAGATTCT Direct Loss 0.942218961768682 0 NA NA prediction 0.884437923537364 Functional Loss - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231402028 chr1:231402028 nonsynonymous SNV 0.801 4 21 hm7G_associated_SNPs_4787 0 0 1 0 1 GNPAT chr1:231402023 3'AG 231402023 Downstream 6bp 4671 chr17 21092067 21092067 1 + G T LAML 21092067 + 21092047 21092087 41 CAGGCTTTCTTTGACTGTCTGCGTGCCGAGATGGAACAGTA CAGGCTTTCTTTGACTGTCTTCGTGCCGAGATGGAACAGTA Direct Loss 0.942210845435687 0 NA NA prediction 0.884421690871373 Functional Loss - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21092067 chr17:21092067 synonymous SNV . 0 21 hm7G_associated_SNPs_4788 0 0 1 0 1 DHRS7B chr17:21092024 3'AG 21092024 Downstream 44bp 4672 chr5 52856492 52856492 1 + G A OV 52856492 + 52856472 52856512 41 CTGGCGTTTGCCTGCAGCAAGATGGCGGCGGTGTCAATGTC CTGGCGTTTGCCTGCAGCAAAATGGCGGCGGTGTCAATGTC Direct Loss 0.942203176225647 0 NA NA prediction 0.884406352451293 Functional Loss - NDUFS4 ENSG00000164258 UTR5 Human protein_coding chr5:52856492 chr5:52856492 . . 0 21 hm7G_associated_SNPs_4790 0 0 1 0 1 NDUFS4 chr5:52856590 5'GT 52856590 Upstream 99bp 4673 chr8 27297833 27297833 1 + G T THYM 27297833 + 27297813 27297853 41 AAGGATGTCATCGGGGTGCTGGAGAAAGGAGACCGGCTGCC AAGGATGTCATCGGGGTGCTTGAGAAAGGAGACCGGCTGCC Direct Loss 0.94219353077976 0 NA NA prediction 0.884387061559521 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27297833 chr8:27297833 synonymous SNV . 0 21 hm7G_associated_SNPs_4792 0 0 1 0 1 PTK2B chr8:27297754 3'AG 27297754 Downstream 80bp 4674 chrX 70516458 70516458 1 + G C CESC 70516458 + 70516438 70516478 41 AGCCCATGGACCAGTTAGATGATGAAGAGGGACTTCCAGAG AGCCCATGGACCAGTTAGATCATGAAGAGGGACTTCCAGAG Direct Loss 0.942188005504375 0 NA NA prediction 0.88437601100875 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70516458 chrX:70516458 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4793 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 44bp 4675 chrX 70516458 70516458 1 + G C CESC 70516458 + 70516438 70516478 41 AGCCCATGGACCAGTTAGATGATGAAGAGGGACTTCCAGAG AGCCCATGGACCAGTTAGATCATGAAGAGGGACTTCCAGAG Direct Loss 0.942188005504375 0 NA NA prediction 0.88437601100875 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70516458 chrX:70516458 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4793 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 53bp 4676 chr6 32609184 32609184 1 + G A SKCM 32609184 + 32609164 32609204 41 GGAGATGAGCAGTTCTACGTGGACCTGGAGAGGAAGGAGAC GGAGATGAGCAGTTCTACGTAGACCTGGAGAGGAAGGAGAC Direct Loss 0.94217029330669 0 NA NA prediction 0.884340586613379 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609184 chr6:32609184 synonymous SNV . 0 21 hm7G_associated_SNPs_4794 0 0 0 0 1 HLA-DQA1 chr6:32609087 3'AG 32609087 Downstream 98bp 4677 chr1 185067296 185067296 1 + G T LGG 185067296 + 185067276 185067316 41 CAGTAATGCATCCACACATAGCAATCAGGAAGCAGGCCCTA CAGTAATGCATCCACACATATCAATCAGGAAGCAGGCCCTA Direct Loss 0.942166009568597 0 NA NA prediction 0.884332019137194 Functional Loss - RNF2 ENSG00000121481 CDS Human protein_coding chr1:185067296 chr1:185067296 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_4797 0 0 1 0 1 RNF2 chr1:185067204 3'AG 185067204 Downstream 93bp 4678 chr5 71015259 71015259 1 + G A COAD 71015259 + 71015239 71015279 41 TCTACTCTGCCGTGGATGATGCCTCCCACGAGAAGGAGCTG TCTACTCTGCCGTGGATGATACCTCCCACGAGAAGGAGCTG Direct Loss 0.942163479745176 0 NA NA prediction 0.884326959490352 Functional Loss - CARTPT ENSG00000164326 CDS Human protein_coding chr5:71015259 chr5:71015259 nonsynonymous SNV 0.946 0 21 hm7G_associated_SNPs_4798 0 0 0 0 1 CARTPT chr5:71015279 5'GT 71015279 Upstream 21bp 4679 chr11 73589827 73589827 1 + G A SKCM 73589827 + 73589807 73589847 41 TTTGTCTTTCTTCGTAGGAAGGATGAAGGGGAGGCCTGGCT TTTGTCTTTCTTCGTAGGAAAGATGAAGGGGAGGCCTGGCT Direct Loss 0.942157061186536 0 NA NA prediction 0.884314122373073 Functional Loss - PAAF1;PAAF1 ENSG00000175575;ENSG00000175575 exonic;splicing Human protein_coding chr11:73589827 chr11:73589827 synonymous SNV . 0 21 hm7G_associated_SNPs_4799 0 0 1 0 2 PAAF1 chr11:73589824 3'AG 73589824 Downstream 4bp 4680 chr11 73589827 73589827 1 + G A SKCM 73589827 + 73589807 73589847 41 TTTGTCTTTCTTCGTAGGAAGGATGAAGGGGAGGCCTGGCT TTTGTCTTTCTTCGTAGGAAAGATGAAGGGGAGGCCTGGCT Direct Loss 0.942157061186536 0 NA NA prediction 0.884314122373073 Functional Loss - PAAF1;PAAF1 ENSG00000175575;ENSG00000175575 exonic;splicing Human protein_coding chr11:73589827 chr11:73589827 synonymous SNV . 0 21 hm7G_associated_SNPs_4799 0 0 1 0 2 PAAF1 chr11:73589864 5'GT 73589864 Upstream 38bp 4681 chrX 77373593 77373593 1 + G A CESC 77373593 + 77373573 77373613 41 CAGAAGGCTGGTGGGTTTTTGATGAAGAAGGAGCTGAACTA CAGAAGGCTGGTGGGTTTTTAATGAAGAAGGAGCTGAACTA Direct Loss 0.942137344424629 0 NA NA prediction 0.884274688849259 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373593 chrX:77373593 synonymous SNV . 0 21 hm7G_associated_SNPs_4801 0 0 1 0 2 PGK1 chrX:77373548 3'AG 77373548 Downstream 46bp 4682 chrX 77373593 77373593 1 + G A CESC 77373593 + 77373573 77373613 41 CAGAAGGCTGGTGGGTTTTTGATGAAGAAGGAGCTGAACTA CAGAAGGCTGGTGGGTTTTTAATGAAGAAGGAGCTGAACTA Direct Loss 0.942137344424629 0 NA NA prediction 0.884274688849259 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77373593 chrX:77373593 synonymous SNV . 0 21 hm7G_associated_SNPs_4801 0 0 1 0 2 PGK1 chrX:77373667 5'GT 77373667 Upstream 75bp 4683 chr2 28631654 28631654 1 + G A STAD 28631654 + 28631634 28631674 41 TGAAGAGGAGGAGAAGCGTCGCATCCGGCGGGAGAGGAACA TGAAGAGGAGGAGAAGCGTCACATCCGGCGGGAGAGGAACA Direct Loss 0.942118924622808 0 NA NA prediction 0.884237849245616 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28631654 chr2:28631654 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_4803 0 0 1 0 2 FOSL2 chr2:28631626 3'AG 28631626 Downstream 29bp 4684 chr2 28631654 28631654 1 + G A STAD 28631654 + 28631634 28631674 41 TGAAGAGGAGGAGAAGCGTCGCATCCGGCGGGAGAGGAACA TGAAGAGGAGGAGAAGCGTCACATCCGGCGGGAGAGGAACA Direct Loss 0.942118924622808 0 NA NA prediction 0.884237849245616 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28631654 chr2:28631654 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_4803 0 0 1 0 2 FOSL2 chr2:28631733 5'GT 28631733 Upstream 80bp 4685 chr14 24424358 24424358 1 + G A BLCA 24424358 + 24424338 24424378 41 ACGCTGCAGGGGGAGGGGCTGAGCGTGACGGGCACCGTGTG ACGCTGCAGGGGGAGGGGCTAAGCGTGACGGGCACCGTGTG Direct Loss 0.942117403221864 0 NA NA prediction 0.884234806443728 Functional Loss - DHRS4 ENSG00000157326 CDS Human protein_coding chr14:24424358 chr14:24424358 synonymous SNV . 0 21 hm7G_associated_SNPs_4804 0 0 1 0 1 DHRS4 chr14:24424421 5'GT 24424421 Upstream 64bp 4686 chr17 61681964 61681964 1 + G A STAD 61681964 + 61681944 61681984 41 GTGTGTCGCAGCAAACATATGCCCAAGTCAACGATTGAGAC GTGTGTCGCAGCAAACATATACCCAAGTCAACGATTGAGAC Direct Loss 0.942111848355902 0 NA NA prediction 0.884223696711803 Functional Loss - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61681964 chr17:61681964 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4805 0 0 1 0 2 TACO1 chr17:61681894 3'AG 61681894 Downstream 71bp 4687 chr17 61681964 61681964 1 + G A STAD 61681964 + 61681944 61681984 41 GTGTGTCGCAGCAAACATATGCCCAAGTCAACGATTGAGAC GTGTGTCGCAGCAAACATATACCCAAGTCAACGATTGAGAC Direct Loss 0.942111848355902 0 NA NA prediction 0.884223696711803 Functional Loss - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61681964 chr17:61681964 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4805 0 0 1 0 2 TACO1 chr17:61682000 5'GT 61682000 Upstream 37bp 4688 chr18 29121180 29121180 1 + G A UCEC 29121180 + 29121160 29121200 41 ACCACTTTTACTGCTGATGTGCCATTGCGGAAAGGGCGCCA ACCACTTTTACTGCTGATGTACCATTGCGGAAAGGGCGCCA Direct Loss 0.942109537856692 0 NA NA prediction 0.884219075713384 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29121180 chr18:29121180 nonsynonymous SNV 0.229 1 21 hm7G_associated_SNPs_4806 0 0 1 0 2 DSG2 chr18:29121156 3'AG 29121156 Downstream 25bp 4689 chr18 29121180 29121180 1 + G A UCEC 29121180 + 29121160 29121200 41 ACCACTTTTACTGCTGATGTGCCATTGCGGAAAGGGCGCCA ACCACTTTTACTGCTGATGTACCATTGCGGAAAGGGCGCCA Direct Loss 0.942109537856692 0 NA NA prediction 0.884219075713384 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29121180 chr18:29121180 nonsynonymous SNV 0.229 1 21 hm7G_associated_SNPs_4806 0 0 1 0 2 DSG2 chr18:29121277 5'GT 29121277 Upstream 98bp 4690 chr2 198400314 198400314 1 + G A LUAD 198400314 + 198400294 198400334 41 ACAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTGTG ACAAAATTCTTGAACCACCTAAAGGCCAAGATGAAGGTGTG Direct Loss 0.942107882775899 0 NA NA prediction 0.884215765551797 Functional Loss - HSPE1-MOB4;MOB4 ENSG00000115540;ENSG00000270757 CDS Human other chr2:198400314 chr2:198400314 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4807 0 0 1 0 3 HSPE1-MOB4;MOB4 chr2:198400254 3'AG 198400254 Downstream 61bp 4691 chr2 198400314 198400314 1 + G A LUAD 198400314 + 198400294 198400334 41 ACAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTGTG ACAAAATTCTTGAACCACCTAAAGGCCAAGATGAAGGTGTG Direct Loss 0.942107882775899 0 NA NA prediction 0.884215765551797 Functional Loss - HSPE1-MOB4;MOB4 ENSG00000115540;ENSG00000270757 CDS Human other chr2:198400314 chr2:198400314 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4807 0 0 1 0 3 HSPE1-MOB4;MOB4 chr2:198400329 5'GT 198400329 Upstream 16bp 4692 chr2 198400314 198400314 1 + G A LUAD 198400314 + 198400294 198400334 41 ACAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTGTG ACAAAATTCTTGAACCACCTAAAGGCCAAGATGAAGGTGTG Direct Loss 0.942107882775899 0 NA NA prediction 0.884215765551797 Functional Loss - HSPE1-MOB4;MOB4 ENSG00000115540;ENSG00000270757 CDS Human other chr2:198400314 chr2:198400314 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4807 0 0 1 0 3 HSPE1-MOB4;MOB4 chr2:198400354 5'GT 198400354 Upstream 41bp 4693 chr16 56624826 56624826 1 + G A SKCM 56624826 + 56624806 56624846 41 GCAAAGGCGGAGAGGCAGCTGAGGCAGAAGCAGAGAAGTGC GCAAAGGCGGAGAGGCAGCTAAGGCAGAAGCAGAGAAGTGC Direct Loss 0.942092674500974 0 NA NA prediction 0.884185349001948 Functional Loss - MT3 ENSG00000087250 CDS Human protein_coding chr16:56624826 chr16:56624826 nonsynonymous SNV 0.073 0 21 hm7G_associated_SNPs_4808 0 0 0 1 1 MT3 chr16:56624752 3'AG 56624752 Downstream 75bp 4694 chr14 100129272 100129272 1 + G A LUAD 100129272 + 100129252 100129292 41 GTGGCAGTACAGTGAGATCTGCATGGGCCACGGCCAGACCT GTGGCAGTACAGTGAGATCTACATGGGCCACGGCCAGACCT Direct Loss 0.942090897051549 0 NA NA prediction 0.884181794103097 Functional Loss - HHIPL1 ENSG00000182218 CDS Human protein_coding chr14:100129272 chr14:100129272 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4809 0 0 0 0 2 HHIPL1 chr14:100129213 3'AG 100129213 Downstream 60bp 4695 chr14 100129272 100129272 1 + G A LUAD 100129272 + 100129252 100129292 41 GTGGCAGTACAGTGAGATCTGCATGGGCCACGGCCAGACCT GTGGCAGTACAGTGAGATCTACATGGGCCACGGCCAGACCT Direct Loss 0.942090897051549 0 NA NA prediction 0.884181794103097 Functional Loss - HHIPL1 ENSG00000182218 CDS Human protein_coding chr14:100129272 chr14:100129272 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4809 0 0 0 0 2 HHIPL1 chr14:100129358 5'GT 100129358 Upstream 87bp 4696 chr1 113059994 113059994 1 + G A LAML 113059994 + 113059974 113060014 41 TCTCCAGATTACTGTGTCTTGGACAAGGCTGCAGGTGAGTA TCTCCAGATTACTGTGTCTTAGACAAGGCTGCAGGTGAGTA Direct Loss 0.942077341765286 0 NA NA prediction 0.884154683530572 Functional Loss - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113059994 chr1:113059994 synonymous SNV . 0 21 hm7G_associated_SNPs_4810 0 0 0 0 1 WNT2B chr1:113060007 5'GT 113060007 Upstream 14bp 4697 chr1 161180475 161180475 1 + G T LUAD 161180475 + 161180455 161180495 41 TTGAGTTTGATGTTCCTGTTGGTTCTCGAGGGGACTGCTAT TTGAGTTTGATGTTCCTGTTTGTTCTCGAGGGGACTGCTAT Direct Loss 0.942062701758819 0 NA NA prediction 0.884125403517638 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161180475 chr1:161180475 nonsynonymous SNV 0.940 5 21 hm7G_associated_SNPs_4812 0 0 1 0 2 NDUFS2 chr1:161180381 3'AG 161180381 Downstream 95bp 4698 chr1 161180475 161180475 1 + G T LUAD 161180475 + 161180455 161180495 41 TTGAGTTTGATGTTCCTGTTGGTTCTCGAGGGGACTGCTAT TTGAGTTTGATGTTCCTGTTTGTTCTCGAGGGGACTGCTAT Direct Loss 0.942062701758819 0 NA NA prediction 0.884125403517638 Functional Loss - NDUFS2 ENSG00000158864 CDS Human protein_coding chr1:161180475 chr1:161180475 nonsynonymous SNV 0.940 5 21 hm7G_associated_SNPs_4812 0 0 1 0 2 NDUFS2 chr1:161180500 5'GT 161180500 Upstream 26bp 4699 chr1 100598848 100598848 1 + G T SARC 100598848 + 100598828 100598868 41 CCGCAGGGAAAAGATTTTGTGGTGAACACGCTGGAGCCGCG CCGCAGGGAAAAGATTTTGTTGTGAACACGCTGGAGCCGCG Direct Loss 0.942057618130293 0 NA NA prediction 0.884115236260586 Functional Loss - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100598848 chr1:100598848 nonsynonymous SNV 0.971 4 21 hm7G_associated_SNPs_4813 0 0 1 2 1 TRMT13 chr1:100598871 5'GT 100598871 Upstream 24bp 4700 chr1 53068201 53068201 1 + G A rs139200335 53068201 + 53068181 53068221 41 CGGGGCAAACTGGTGTCGCTGGAGAAGTACCGCGGATCGGT CGGGGCAAACTGGTGTCGCTAGAGAAGTACCGCGGATCGGT Direct Loss 0.942053209723377 0 NA NA prediction 0.884106419446754 Functional Loss - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53068201 chr1:53068201 synonymous SNV . 0 21 hm7G_associated_SNPs_4814 0 0 0 0 1 GPX7 chr1:53068219 5'GT 53068219 Upstream 19bp 4701 chr2 71148277 71148277 1 + G A SKCM 71148277 + 71148257 71148297 41 CTGCCTAAGGGCCTGGACCTGGACCGGCCCAAGCGGACACG CTGCCTAAGGGCCTGGACCTAGACCGGCCCAAGCGGACACG Direct Loss 0.942052088660846 0 NA NA prediction 0.884104177321692 Functional Loss - VAX2 ENSG00000116035 CDS Human protein_coding chr2:71148277 chr2:71148277 synonymous SNV . 0 21 hm7G_associated_SNPs_4815 0 0 0 0 1 VAX2 chr2:71148228 3'AG 71148228 Downstream 50bp 4702 chr3 12618191 12618191 1 + G T UCEC 12618191 + 12618171 12618211 41 CAAGTGTGTATTGGGTGGAAGATCAGAATAAAAAGAACGAG CAAGTGTGTATTGGGTGGAATATCAGAATAAAAAGAACGAG Direct Loss 0.942044602757913 0 NA NA prediction 0.884089205515827 Functional Loss - MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12618191 chr3:12618191 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4817 0 0 1 0 2 MKRN2 chr3:12618130 3'AG 12618130 Downstream 62bp 4703 chr3 12618191 12618191 1 + G T UCEC 12618191 + 12618171 12618211 41 CAAGTGTGTATTGGGTGGAAGATCAGAATAAAAAGAACGAG CAAGTGTGTATTGGGTGGAATATCAGAATAAAAAGAACGAG Direct Loss 0.942044602757913 0 NA NA prediction 0.884089205515827 Functional Loss - MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12618191 chr3:12618191 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4817 0 0 1 0 2 MKRN2 chr3:12618240 5'GT 12618240 Upstream 50bp 4704 chr16 85952338 85952338 1 + G A COAD 85952338 + 85952318 85952358 41 CAGCGGCAACGCCGTGGTGTGCAAAGGCAGGCCCAACAAGC CAGCGGCAACGCCGTGGTGTACAAAGGCAGGCCCAACAAGC Direct Loss 0.942030436331678 0 NA NA prediction 0.884060872663355 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85952338 chr16:85952338 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_4819 0 0 0 0 1 IRF8 chr16:85952409 5'GT 85952409 Upstream 72bp 4705 chr2 27261400 27261400 1 + G T BLCA 27261400 + 27261380 27261420 41 TGGGAGCAGATTCCCAAGAAGGTGAGGAGCTGGGAGGACGT TGGGAGCAGATTCCCAAGAATGTGAGGAGCTGGGAGGACGT Direct Loss 0.942024849955241 0 NA NA prediction 0.884049699910481 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27261400 chr2:27261400 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4820 0 0 1 0 2 TMEM214 chr2:27261352 3'AG 27261352 Downstream 49bp 4706 chr2 27261400 27261400 1 + G T BLCA 27261400 + 27261380 27261420 41 TGGGAGCAGATTCCCAAGAAGGTGAGGAGCTGGGAGGACGT TGGGAGCAGATTCCCAAGAATGTGAGGAGCTGGGAGGACGT Direct Loss 0.942024849955241 0 NA NA prediction 0.884049699910481 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27261400 chr2:27261400 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4820 0 0 1 0 2 TMEM214 chr2:27261400 5'GT 27261400 Upstream 1bp 4707 chr6 34850791 34850791 1 - C T LUSC 34850791 - 34850771 34850811 41 ACTCATCATTACTTAATCCTGCAGCCAAAAAACTGAAAATA ACTCATCATTACTTAATCCTACAGCCAAAAAACTGAAAATA Direct Loss 0.94202176723498 0 NA NA prediction 0.88404353446996 Functional Loss - TAF11 ENSG00000064995 CDS Human protein_coding chr6:34850791 chr6:34850791 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4822 0 0 1 0 2 TAF11 chr6:34850709 5'GT 34850709 Upstream 83bp 4708 chr6 34850791 34850791 1 - C T LUSC 34850791 - 34850771 34850811 41 ACTCATCATTACTTAATCCTGCAGCCAAAAAACTGAAAATA ACTCATCATTACTTAATCCTACAGCCAAAAAACTGAAAATA Direct Loss 0.94202176723498 0 NA NA prediction 0.88404353446996 Functional Loss - TAF11 ENSG00000064995 CDS Human protein_coding chr6:34850791 chr6:34850791 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4822 0 0 1 0 2 TAF11 chr6:34850857 3'AG 34850857 Downstream 67bp 4709 chr20 56136617 56136617 1 + G A UCEC 56136617 + 56136597 56136637 41 CACATCTGTGACGGCTCTGAGGAGGAGAATGGGCGGCTTCT CACATCTGTGACGGCTCTGAAGAGGAGAATGGGCGGCTTCT Direct Loss 0.942010422084163 0 NA NA prediction 0.884020844168325 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56136617 chr20:56136617 synonymous SNV . 0 21 hm7G_associated_SNPs_4824 0 0 1 0 1 PCK1 chr20:56136691 5'GT 56136691 Upstream 75bp 4710 chr16 84024184 84024184 1 + G A UCEC 84024184 + 84024164 84024204 41 TCAGATCCAGTCGCTGCTGAGCTCAGTGGAGAGTGCGGTGG TCAGATCCAGTCGCTGCTGAACTCAGTGGAGAGTGCGGTGG Direct Loss 0.941996805762058 0 NA NA prediction 0.883993611524115 Functional Loss - NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84024184 chr16:84024184 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_4825 0 0 0 0 2 NECAB2 chr16:84024099 3'AG 84024099 Downstream 86bp 4711 chr16 84024184 84024184 1 + G A UCEC 84024184 + 84024164 84024204 41 TCAGATCCAGTCGCTGCTGAGCTCAGTGGAGAGTGCGGTGG TCAGATCCAGTCGCTGCTGAACTCAGTGGAGAGTGCGGTGG Direct Loss 0.941996805762058 0 NA NA prediction 0.883993611524115 Functional Loss - NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84024184 chr16:84024184 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_4825 0 0 0 0 2 NECAB2 chr16:84024235 5'GT 84024235 Upstream 52bp 4712 chr20 10036179 10036179 1 + G A SKCM 10036179 + 10036159 10036199 41 CCTGAAGCCACAACAGCAGAGCTGATCAGGAAGAGGGAACT CCTGAAGCCACAACAGCAGAACTGATCAGGAAGAGGGAACT Direct Loss 0.941978994386577 0 NA NA prediction 0.883957988773154 Functional Loss - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10036179 chr20:10036179 synonymous SNV . 0 21 hm7G_associated_SNPs_4829 0 0 0 0 1 ANKEF1 chr20:10036150 3'AG 10036150 Downstream 30bp 4713 chr19 45561090 45561090 1 + G A LUSC 45561090 + 45561070 45561110 41 AGAAGGCGGCAGAAAAGCCAGAGGAGGAGGAGTCAGCGGCC AGAAGGCGGCAGAAAAGCCAAAGGAGGAGGAGTCAGCGGCC Direct Loss 0.941953521522881 0 NA NA prediction 0.883907043045762 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561090 chr19:45561090 nonsynonymous SNV 0.891 0 21 hm7G_associated_SNPs_4831 0 0 1 0 3 CLASRP chr19:45561008 3'AG 45561008 Downstream 83bp 4714 chr19 45561090 45561090 1 + G A LUSC 45561090 + 45561070 45561110 41 AGAAGGCGGCAGAAAAGCCAGAGGAGGAGGAGTCAGCGGCC AGAAGGCGGCAGAAAAGCCAAAGGAGGAGGAGTCAGCGGCC Direct Loss 0.941953521522881 0 NA NA prediction 0.883907043045762 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561090 chr19:45561090 nonsynonymous SNV 0.891 0 21 hm7G_associated_SNPs_4831 0 0 1 0 3 CLASRP chr19:45561140 5'GT 45561140 Upstream 51bp 4715 chr19 45561090 45561090 1 + G A LUSC 45561090 + 45561070 45561110 41 AGAAGGCGGCAGAAAAGCCAGAGGAGGAGGAGTCAGCGGCC AGAAGGCGGCAGAAAAGCCAAAGGAGGAGGAGTCAGCGGCC Direct Loss 0.941953521522881 0 NA NA prediction 0.883907043045762 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561090 chr19:45561090 nonsynonymous SNV 0.891 0 21 hm7G_associated_SNPs_4831 0 0 1 0 3 CLASRP chr19:45561156 5'GT 45561156 Upstream 67bp 4716 chr19 13888962 13888962 1 + G A COAD 13888962 + 13888942 13888982 41 TGGCACTGCTGAAGGCCCCAGCCAAGAAGAAAGGGGCAGCT TGGCACTGCTGAAGGCCCCAACCAAGAAGAAAGGGGCAGCT Direct Loss 0.941941783400764 0 NA NA prediction 0.883883566801527 Functional Loss - C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13888962 chr19:13888962 nonsynonymous SNV 0.007 0 21 hm7G_associated_SNPs_4832 0 0 1 0 1 C19orf53 chr19:13888866 3'AG 13888866 Downstream 97bp 4717 chr12 6939088 6939088 1 + G C HNSC 6939088 + 6939068 6939108 41 GTAGCAAACCCCATGCACCTGCAGATGCGGGAGGACATGGC GTAGCAAACCCCATGCACCTCCAGATGCGGGAGGACATGGC Direct Loss 0.941939435702173 0 NA NA prediction 0.883878871404346 Functional Loss - P3H3 ENSG00000110811;ENSG00000250510 CDS Human other chr12:6939088 chr12:6939088 synonymous SNV . 0 21 hm7G_associated_SNPs_4833 0 0 1 0 1 P3H3 chr12:6939023 3'AG 6939023 Downstream 66bp 4718 chr8 57129959 57129959 1 + G C BLCA 57129959 + 57129939 57129979 41 CTACGGCAGCAGAAAGAGATGAAATCTTGAGAGCAGTGGGA CTACGGCAGCAGAAAGAGATCAAATCTTGAGAGCAGTGGGA Direct Loss 0.941938641758055 0 NA NA prediction 0.883877283516111 Functional Loss - CHCHD7 ENSG00000170791 CDS Human protein_coding chr8:57129959 chr8:57129959 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4834 0 0 1 1 1 CHCHD7 chr8:57129890 3'AG 57129890 Downstream 70bp 4719 chr19 38893808 38893808 1 + G A BLCA 38893808 + 38893788 38893828 41 ACTTTCATGGAGGCGGTGAAGGCGGAAGCGTGGGAGGGGGC ACTTTCATGGAGGCGGTGAAAGCGGAAGCGTGGGAGGGGGC Direct Loss 0.941926852505658 0 NA NA prediction 0.883853705011316 Functional Loss - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38893808 chr19:38893808 synonymous SNV . 0 21 hm7G_associated_SNPs_4836 0 0 0 0 1 FAM98C chr19:38893858 5'GT 38893858 Upstream 51bp 4720 chr4 88732573 88732573 1 + G A SKCM 88732573 + 88732553 88732593 41 AGTGATGAAGAAGAAGAGGAGGAAGAGGAAGGAAATGAAAA AGTGATGAAGAAGAAGAGGAAGAAGAGGAAGGAAATGAAAA Direct Loss 0.941922735184449 0 NA NA prediction 0.883845470368899 Functional Loss - IBSP ENSG00000029559 CDS Human protein_coding chr4:88732573 chr4:88732573 synonymous SNV . 0 21 hm7G_associated_SNPs_4837 0 0 0 0 1 IBSP chr4:88732514 3'AG 88732514 Downstream 60bp 4721 chr2 119748182 119748182 1 + G A SKCM 119748182 + 119748162 119748202 41 TAGGACTTCAAGGACAGCAAGGAAGAAAAGGAGAATCAGGA TAGGACTTCAAGGACAGCAAAGAAGAAAAGGAGAATCAGGA Direct Loss 0.941916274683784 0 NA NA prediction 0.883832549367569 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119748182 chr2:119748182 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_4838 0 0 0 0 2 MARCO chr2:119748165 3'AG 119748165 Downstream 18bp 4722 chr2 119748182 119748182 1 + G A SKCM 119748182 + 119748162 119748202 41 TAGGACTTCAAGGACAGCAAGGAAGAAAAGGAGAATCAGGA TAGGACTTCAAGGACAGCAAAGAAGAAAAGGAGAATCAGGA Direct Loss 0.941916274683784 0 NA NA prediction 0.883832549367569 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119748182 chr2:119748182 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_4838 0 0 0 0 2 MARCO chr2:119748209 5'GT 119748209 Upstream 28bp 4723 chr22 39483104 39483104 1 + G T BLCA 39483104 + 39483084 39483124 41 GATGAGCACAGCCAAGACCTGAGTGGGAGGCTGCGGGCCAT GATGAGCACAGCCAAGACCTTAGTGGGAGGCTGCGGGCCAT Direct Loss 0.94190140684249 0 NA NA prediction 0.88380281368498 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39483104 chr22:39483104 synonymous SNV . 0 21 hm7G_associated_SNPs_4841 0 0 0 0 2 APOBEC3G chr22:39483016 3'AG 39483016 Downstream 89bp 4724 chr22 39483104 39483104 1 + G T BLCA 39483104 + 39483084 39483124 41 GATGAGCACAGCCAAGACCTGAGTGGGAGGCTGCGGGCCAT GATGAGCACAGCCAAGACCTTAGTGGGAGGCTGCGGGCCAT Direct Loss 0.94190140684249 0 NA NA prediction 0.88380281368498 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39483104 chr22:39483104 synonymous SNV . 0 21 hm7G_associated_SNPs_4841 0 0 0 0 2 APOBEC3G chr22:39483131 5'GT 39483131 Upstream 28bp 4725 chr22 24917987 24917987 1 + G A COAD 24917987 + 24917967 24918007 41 ACGAGTTTACCTCGGGAGATGGAAAGAAAGGTATGTCCCAT ACGAGTTTACCTCGGGAGATAGAAAGAAAGGTATGTCCCAT Direct Loss 0.941858870478535 0 NA NA prediction 0.883717740957071 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24917987 chr22:24917987 nonsynonymous SNV 0.986 5 21 hm7G_associated_SNPs_4844 0 0 0 0 2 UPB1 chr22:24917954 3'AG 24917954 Downstream 34bp 4726 chr22 24917987 24917987 1 + G A COAD 24917987 + 24917967 24918007 41 ACGAGTTTACCTCGGGAGATGGAAAGAAAGGTATGTCCCAT ACGAGTTTACCTCGGGAGATAGAAAGAAAGGTATGTCCCAT Direct Loss 0.941858870478535 0 NA NA prediction 0.883717740957071 Functional Loss - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24917987 chr22:24917987 nonsynonymous SNV 0.986 5 21 hm7G_associated_SNPs_4844 0 0 0 0 2 UPB1 chr22:24917996 5'GT 24917996 Upstream 10bp 4727 chr17 35825576 35825576 1 + G T LUAD 35825576 + 35825556 35825596 41 AGGAGGTCCAGGACCTGTATGAAACAATGAGGCGATTTGCA AGGAGGTCCAGGACCTGTATTAAACAATGAGGCGATTTGCA Direct Loss 0.941838868281545 0 NA NA prediction 0.883677736563089 Functional Loss - TADA2A ENSG00000108264 CDS Human other chr17:35825576 chr17:35825576 stopgain 0.999 1 21 hm7G_associated_SNPs_4845 0 0 0 0 2 TADA2A chr17:35825535 3'AG 35825535 Downstream 42bp 4728 chr17 35825576 35825576 1 + G T LUAD 35825576 + 35825556 35825596 41 AGGAGGTCCAGGACCTGTATGAAACAATGAGGCGATTTGCA AGGAGGTCCAGGACCTGTATTAAACAATGAGGCGATTTGCA Direct Loss 0.941838868281545 0 NA NA prediction 0.883677736563089 Functional Loss - TADA2A ENSG00000108264 CDS Human other chr17:35825576 chr17:35825576 stopgain 0.999 1 21 hm7G_associated_SNPs_4845 0 0 0 0 2 TADA2A chr17:35825645 5'GT 35825645 Upstream 70bp 4729 chr11 94230054 94230054 1 + G T LUSC 94230054 + 94230034 94230074 41 AATGAAGAGTGGTATCGATTGCAAGAAAAAAAAATGGAAAA AATGAAGAGTGGTATCGATTTCAAGAAAAAAAAATGGAAAA Direct Loss 0.941834919919058 0 NA NA prediction 0.883669839838115 Functional Loss - ANKRD49 ENSG00000168876 CDS Human protein_coding chr11:94230054 chr11:94230054 nonsynonymous SNV 0.970 0 21 hm7G_associated_SNPs_4846 0 0 1 0 1 ANKRD49 chr11:94230117 5'GT 94230117 Upstream 64bp 4730 chr12 110352349 110352349 1 + G A SKCM 110352349 + 110352329 110352369 41 AGCAACTTATTCGAAATCTTGAGGAGGTGAGAGAGTTGGCT AGCAACTTATTCGAAATCTTAAGGAGGTGAGAGAGTTGGCT Direct Loss 0.941824252451419 0 NA NA prediction 0.883648504902839 Functional Loss - TCHP ENSG00000139437 CDS Human protein_coding chr12:110352349 chr12:110352349 nonsynonymous SNV 0.111 4 21 hm7G_associated_SNPs_4847 0 0 1 0 1 TCHP chr12:110352432 5'GT 110352432 Upstream 84bp 4731 chr2 47601119 47601119 1 + G A LUAD 47601119 + 47601099 47601139 41 ACCTCCATGTGCTGGTGTGTGAACACTGCTGGGGTCAGAAG ACCTCCATGTGCTGGTGTGTAAACACTGCTGGGGTCAGAAG Direct Loss 0.941823852479595 0 NA NA prediction 0.883647704959191 Functional Loss - EPCAM ENSG00000119888 CDS Human protein_coding chr2:47601119 chr2:47601119 synonymous SNV . 0 21 hm7G_associated_SNPs_4848 0 0 1 0 1 EPCAM chr2:47601187 5'GT 47601187 Upstream 69bp 4732 chr1 186280656 186280656 1 + G T LUAD 186280656 + 186280636 186280676 41 AAGGATTTGGAGGACTAACTGGACAAATAGTGGCAGCGCTT AAGGATTTGGAGGACTAACTTGACAAATAGTGGCAGCGCTT Direct Loss 0.941812227822469 0 NA NA prediction 0.883624455644938 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186280656 chr1:186280656 stopgain 0.979 1 21 hm7G_associated_SNPs_4849 0 0 0 1 2 PRG4 chr1:186280572 3'AG 186280572 Downstream 85bp 4733 chr1 186280656 186280656 1 + G T LUAD 186280656 + 186280636 186280676 41 AAGGATTTGGAGGACTAACTGGACAAATAGTGGCAGCGCTT AAGGATTTGGAGGACTAACTTGACAAATAGTGGCAGCGCTT Direct Loss 0.941812227822469 0 NA NA prediction 0.883624455644938 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186280656 chr1:186280656 stopgain 0.979 1 21 hm7G_associated_SNPs_4849 0 0 0 1 2 PRG4 chr1:186280728 5'GT 186280728 Upstream 73bp 4734 chr20 31692675 31692675 1 + G T UCEC 31692675 + 31692655 31692695 41 CTGGCATTCATGCCCGCAATGAACGGTGAGAGCGGGTGCCT CTGGCATTCATGCCCGCAATTAACGGTGAGAGCGGGTGCCT Direct Loss 0.941795966990236 0 NA NA prediction 0.883591933980472 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31692675 chr20:31692675 nonsynonymous SNV 0.939 1 21 hm7G_associated_SNPs_4851 0 0 0 0 2 BPIFB4 chr20:31692616 3'AG 31692616 Downstream 60bp 4735 chr20 31692675 31692675 1 + G T UCEC 31692675 + 31692655 31692695 41 CTGGCATTCATGCCCGCAATGAACGGTGAGAGCGGGTGCCT CTGGCATTCATGCCCGCAATTAACGGTGAGAGCGGGTGCCT Direct Loss 0.941795966990236 0 NA NA prediction 0.883591933980472 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31692675 chr20:31692675 nonsynonymous SNV 0.939 1 21 hm7G_associated_SNPs_4851 0 0 0 0 2 BPIFB4 chr20:31692679 5'GT 31692679 Upstream 5bp 4736 chr2 32312563 32312563 1 + G A BLCA 32312563 + 32312543 32312583 41 TAATTTTTTATTTTAAAGCAGGACAGAAGGAGCAAGCTGTG TAATTTTTTATTTTAAAGCAAGACAGAAGGAGCAAGCTGTG Direct Loss 0.94179343869095 0 NA NA prediction 0.883586877381899 Functional Loss - SPAST ENSG00000021574 CDS Human protein_coding chr2:32312563 chr2:32312563 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4852 0 0 1 0 2 SPAST chr2:32312561 3'AG 32312561 Downstream 3bp 4737 chr2 32312563 32312563 1 + G A BLCA 32312563 + 32312543 32312583 41 TAATTTTTTATTTTAAAGCAGGACAGAAGGAGCAAGCTGTG TAATTTTTTATTTTAAAGCAAGACAGAAGGAGCAAGCTGTG Direct Loss 0.94179343869095 0 NA NA prediction 0.883586877381899 Functional Loss - SPAST ENSG00000021574 CDS Human protein_coding chr2:32312563 chr2:32312563 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4852 0 0 1 0 2 SPAST chr2:32312647 5'GT 32312647 Upstream 85bp 4738 chr12 50498451 50498451 1 + G T STAD 50498451 + 50498431 50498471 41 GGGTATTTGAGGAAGACATTGGAGGCAAAAAGCTGACTGAG GGGTATTTGAGGAAGACATTTGAGGCAAAAAGCTGACTGAG Direct Loss 0.941790615151717 0 NA NA prediction 0.883581230303433 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50498451 chr12:50498451 stopgain 0.991 1 21 hm7G_associated_SNPs_4853 0 0 0 0 2 GPD1 chr12:50498357 3'AG 50498357 Downstream 95bp 4739 chr12 50498451 50498451 1 + G T STAD 50498451 + 50498431 50498471 41 GGGTATTTGAGGAAGACATTGGAGGCAAAAAGCTGACTGAG GGGTATTTGAGGAAGACATTTGAGGCAAAAAGCTGACTGAG Direct Loss 0.941790615151717 0 NA NA prediction 0.883581230303433 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50498451 chr12:50498451 stopgain 0.991 1 21 hm7G_associated_SNPs_4853 0 0 0 0 2 GPD1 chr12:50498534 5'GT 50498534 Upstream 84bp 4740 chr10 103368655 103368655 1 + G A UCEC 103368655 + 103368635 103368675 41 CTACCTCTGGATGACGCCTTGCTGAGCTTTGCCCACGCCAA CTACCTCTGGATGACGCCTTACTGAGCTTTGCCCACGCCAA Direct Loss 0.941789917194774 0 NA NA prediction 0.883579834389548 Functional Loss - DPCD ENSG00000166171 CDS Human protein_coding chr10:103368655 chr10:103368655 nonsynonymous SNV 0.041 1 21 hm7G_associated_SNPs_4854 0 0 1 0 2 DPCD chr10:103368592 3'AG 103368592 Downstream 64bp 4741 chr10 103368655 103368655 1 + G A UCEC 103368655 + 103368635 103368675 41 CTACCTCTGGATGACGCCTTGCTGAGCTTTGCCCACGCCAA CTACCTCTGGATGACGCCTTACTGAGCTTTGCCCACGCCAA Direct Loss 0.941789917194774 0 NA NA prediction 0.883579834389548 Functional Loss - DPCD ENSG00000166171 CDS Human protein_coding chr10:103368655 chr10:103368655 nonsynonymous SNV 0.041 1 21 hm7G_associated_SNPs_4854 0 0 1 0 2 DPCD chr10:103368694 5'GT 103368694 Upstream 40bp 4742 chr20 3052913 3052913 1 + G A OV 3052913 + 3052893 3052933 41 CTGCGCGGTCTTGGGCCTCTGCTGCAGCCCGGGTGAGCGGG CTGCGCGGTCTTGGGCCTCTACTGCAGCCCGGGTGAGCGGG Direct Loss 0.941787662569792 0 NA NA prediction 0.883575325139585 Functional Loss - OXT ENSG00000101405 CDS Human protein_coding chr20:3052913 chr20:3052913 nonsynonymous SNV 0.976 5 21 hm7G_associated_SNPs_4855 0 0 0 0 1 OXT chr20:3052924 5'GT 3052924 Upstream 12bp 4743 chr8 62412051 62412051 1 + G C BLCA 62412051 + 62412031 62412071 41 AAGCTGGGACCCTGAAACATGAGGAGAAGGGAGAGAATGAG AAGCTGGGACCCTGAAACATCAGGAGAAGGGAGAGAATGAG Direct Loss 0.941780120629502 0 NA NA prediction 0.883560241259004 Functional Loss - CLVS1 ENSG00000177182 CDS Human protein_coding chr8:62412051 chr8:62412051 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4858 0 0 0 0 1 CLVS1 chr8:62412014 3'AG 62412014 Downstream 38bp 4744 chr8 86358412 86358412 1 + G C LUSC 86358412 + 86358392 86358432 41 AAGTTTGACCCATCCTGCCTGTTCCCGGCATGCCGGGACTA AAGTTTGACCCATCCTGCCTCTTCCCGGCATGCCGGGACTA Direct Loss 0.94176912062648 0 NA NA prediction 0.883538241252959 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86358412 chr8:86358412 synonymous SNV . 0 21 hm7G_associated_SNPs_4859 0 0 0 0 1 CA3 chr8:86358371 3'AG 86358371 Downstream 42bp 4745 chr12 133294636 133294636 1 + G A UCEC 133294636 + 133294616 133294656 41 ACTACATCCACCGCGCAGATGCCAGGCAGGAGGAGGACAGT ACTACATCCACCGCGCAGATACCAGGCAGGAGGAGGACAGT Direct Loss 0.941764188018902 0 NA NA prediction 0.883528376037803 Functional Loss - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294636 chr12:133294636 nonsynonymous SNV 0.155 0 21 hm7G_associated_SNPs_4860 0 0 1 0 3 PGAM5 chr12:133294573 3'AG 133294573 Downstream 64bp 4746 chr12 133294636 133294636 1 + G A UCEC 133294636 + 133294616 133294656 41 ACTACATCCACCGCGCAGATGCCAGGCAGGAGGAGGACAGT ACTACATCCACCGCGCAGATACCAGGCAGGAGGAGGACAGT Direct Loss 0.941764188018902 0 NA NA prediction 0.883528376037803 Functional Loss - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294636 chr12:133294636 nonsynonymous SNV 0.155 0 21 hm7G_associated_SNPs_4860 0 0 1 0 3 PGAM5 chr12:133294576 3'AG 133294576 Downstream 61bp 4747 chr12 133294636 133294636 1 + G A UCEC 133294636 + 133294616 133294656 41 ACTACATCCACCGCGCAGATGCCAGGCAGGAGGAGGACAGT ACTACATCCACCGCGCAGATACCAGGCAGGAGGAGGACAGT Direct Loss 0.941764188018902 0 NA NA prediction 0.883528376037803 Functional Loss - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294636 chr12:133294636 nonsynonymous SNV 0.155 0 21 hm7G_associated_SNPs_4860 0 0 1 0 3 PGAM5 chr12:133294706 5'GT 133294706 Upstream 71bp 4748 chr8 38835492 38835492 1 + G A UCEC 38835492 + 38835472 38835512 41 GCTGAACTTCCTGTACTGATGCTGGGAAGATCATCTGACCT GCTGAACTTCCTGTACTGATACTGGGAAGATCATCTGACCT Direct Loss 0.941759284390584 0 NA NA prediction 0.883518568781168 Functional Loss - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38835492 chr8:38835492 nonsynonymous SNV 0.205 1 21 hm7G_associated_SNPs_4862 0 0 0 0 1 HTRA4 chr8:38835472 3'AG 38835472 Downstream 21bp 4749 chr15 42858841 42858841 1 + G C CESC 42858841 + 42858821 42858861 41 AGATGGATATATTGGTGACTGAGACAGAAGAACTGGCAGAG AGATGGATATATTGGTGACTCAGACAGAAGAACTGGCAGAG Direct Loss 0.941751079625131 0 NA NA prediction 0.883502159250262 Functional Loss - HAUS2 ENSG00000137814 CDS Human protein_coding chr15:42858841 chr15:42858841 nonsynonymous SNV 0.988 1 21 hm7G_associated_SNPs_4863 0 0 1 0 1 HAUS2 chr15:42858805 3'AG 42858805 Downstream 37bp 4750 chr21 47406534 47406534 1 + G T SARC 47406534 + 47406514 47406554 41 CCTGTGGGGGGCTGGAGGATGCTGTGAACGAGGCCAAGCAC CCTGTGGGGGGCTGGAGGATTCTGTGAACGAGGCCAAGCAC Direct Loss 0.941747994993073 0 NA NA prediction 0.883495989986146 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47406534 chr21:47406534 nonsynonymous SNV 0.173 4 21 hm7G_associated_SNPs_4865 0 0 1 0 2 COL6A1 chr21:47406440 3'AG 47406440 Downstream 95bp 4751 chr21 47406534 47406534 1 + G T SARC 47406534 + 47406514 47406554 41 CCTGTGGGGGGCTGGAGGATGCTGTGAACGAGGCCAAGCAC CCTGTGGGGGGCTGGAGGATTCTGTGAACGAGGCCAAGCAC Direct Loss 0.941747994993073 0 NA NA prediction 0.883495989986146 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47406534 chr21:47406534 nonsynonymous SNV 0.173 4 21 hm7G_associated_SNPs_4865 0 0 1 0 2 COL6A1 chr21:47406599 5'GT 47406599 Upstream 66bp 4752 chr19 5908904 5908904 1 + G A UCEC 5908904 + 5908884 5908924 41 CACAGCCTGCAGGCCACCGTGCACCAGAGGGACGAGCTCAT CACAGCCTGCAGGCCACCGTACACCAGAGGGACGAGCTCAT Direct Loss 0.941745736508626 0 NA NA prediction 0.883491473017252 Functional Loss - VMAC ENSG00000187650 CDS Human protein_coding chr19:5908904 chr19:5908904 synonymous SNV . 0 21 hm7G_associated_SNPs_4866 0 0 0 0 1 VMAC chr19:5908835 3'AG 5908835 Downstream 70bp 4753 chr16 30387757 30387757 1 + G A LUAD 30387757 + 30387737 30387777 41 CCTCCAGGCCGCCTCAATGTGAAGAATGAGGAGTTGGATGC CCTCCAGGCCGCCTCAATGTAAAGAATGAGGAGTTGGATGC Direct Loss 0.941738905985767 0 NA NA prediction 0.883477811971535 Functional Loss - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387757 chr16:30387757 synonymous SNV . 0 21 hm7G_associated_SNPs_4867 0 0 1 0 1 MYLPF chr16:30387744 3'AG 30387744 Downstream 14bp 4754 chr1 52882338 52882338 1 + G C CESC 52882338 + 52882318 52882358 41 AGGTCTAAGAAGAGCCACAAGAAGAGCCGGAGAGGGAATGA AGGTCTAAGAAGAGCCACAACAAGAGCCGGAGAGGGAATGA Direct Loss 0.941720642887301 0 NA NA prediction 0.883441285774602 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52882338 chr1:52882338 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4869 0 0 1 0 1 PRPF38A chr1:52882320 3'AG 52882320 Downstream 19bp 4755 chr11 113849989 113849989 1 + G T SARC 113849989 + 113849969 113850009 41 GGTGCTGACCACCTACATCTGGTACCGGCAGGTGAGCAGAC GGTGCTGACCACCTACATCTTGTACCGGCAGGTGAGCAGAC Direct Loss 0.941703579308961 0 NA NA prediction 0.883407158617922 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113849989 chr11:113849989 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4870 0 0 0 0 2 HTR3A chr11:113849955 3'AG 113849955 Downstream 35bp 4756 chr11 113849989 113849989 1 + G T SARC 113849989 + 113849969 113850009 41 GGTGCTGACCACCTACATCTGGTACCGGCAGGTGAGCAGAC GGTGCTGACCACCTACATCTTGTACCGGCAGGTGAGCAGAC Direct Loss 0.941703579308961 0 NA NA prediction 0.883407158617922 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113849989 chr11:113849989 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4870 0 0 0 0 2 HTR3A chr11:113849999 5'GT 113849999 Upstream 11bp 4757 chr1 27720315 27720315 1 + G A CESC 27720315 + 27720295 27720335 41 CAGGTACCATGATGTGGGGTGCAGGCAGCCCTCTGGCCTGG CAGGTACCATGATGTGGGGTACAGGCAGCCCTCTGGCCTGG Direct Loss 0.941687256818978 0 NA NA prediction 0.883374513637956 Functional Loss - GPR3 ENSG00000181773 CDS Human protein_coding chr1:27720315 chr1:27720315 nonsynonymous SNV 0.982 0 21 hm7G_associated_SNPs_4871 0 0 0 0 1 GPR3 chr1:27720298 3'AG 27720298 Downstream 18bp 4758 chrX 128926698 128926698 1 + G A SKCM 128926698 + 128926678 128926718 41 TCTTTCAAATTCATCTATGTGGATGTGCTGCCCGAGGAGGC TCTTTCAAATTCATCTATGTAGATGTGCTGCCCGAGGAGGC Direct Loss 0.941679502593139 0 NA NA prediction 0.883359005186278 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926698 chrX:128926698 synonymous SNV . 0 21 hm7G_associated_SNPs_4872 0 0 0 0 1 SASH3 chrX:128926603 3'AG 128926603 Downstream 96bp 4759 chr12 113873227 113873227 1 + G A GBM 113873227 + 113873207 113873247 41 GTTGGGGGTGGGGGTCTCCTGGCCGGGGTGGTGGCTGGCCT GTTGGGGGTGGGGGTCTCCTAGCCGGGGTGGTGGCTGGCCT Direct Loss 0.941675571743207 0 NA NA prediction 0.883351143486415 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113873227 chr12:113873227 synonymous SNV . 0 21 hm7G_associated_SNPs_4873 0 0 1 0 1 SDSL chr12:113873134 3'AG 113873134 Downstream 94bp 4760 chr2 178988935 178988935 1 + G A UCEC 178988935 + 178988915 178988955 41 CATGCAAAAAAAAAGCTCCTGCTGAAACTCCTGTGAAAGAA CATGCAAAAAAAAAGCTCCTACTGAAACTCCTGTGAAAGAA Direct Loss 0.941674735375025 0 NA NA prediction 0.883349470750049 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178988935 chr2:178988935 nonsynonymous SNV 0.982 1 21 hm7G_associated_SNPs_4874 0 0 1 0 2 RBM45 chr2:178988854 3'AG 178988854 Downstream 82bp 4761 chr2 178988935 178988935 1 + G A UCEC 178988935 + 178988915 178988955 41 CATGCAAAAAAAAAGCTCCTGCTGAAACTCCTGTGAAAGAA CATGCAAAAAAAAAGCTCCTACTGAAACTCCTGTGAAAGAA Direct Loss 0.941674735375025 0 NA NA prediction 0.883349470750049 Functional Loss - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178988935 chr2:178988935 nonsynonymous SNV 0.982 1 21 hm7G_associated_SNPs_4874 0 0 1 0 2 RBM45 chr2:178989017 5'GT 178989017 Upstream 83bp 4762 chr17 14095375 14095375 1 + G A BLCA 14095375 + 14095355 14095395 41 GCCATTCTGACCTTGGGGGTGAATCCACTCACAGGAGCCCT GCCATTCTGACCTTGGGGGTAAATCCACTCACAGGAGCCCT Direct Loss 0.941665946266295 0 NA NA prediction 0.88333189253259 Functional Loss - COX10 ENSG00000006695 CDS Human protein_coding chr17:14095375 chr17:14095375 synonymous SNV . 0 21 hm7G_associated_SNPs_4875 0 0 0 0 1 COX10 chr17:14095306 3'AG 14095306 Downstream 70bp 4763 chr10 76982014 76982014 1 + G A BLCA 76982014 + 76981994 76982034 41 TTAAAATATCTTATAGCAATGATGGGACAGAATTTGGAGGA TTAAAATATCTTATAGCAATAATGGGACAGAATTTGGAGGA Direct Loss 0.941644550250712 0 NA NA prediction 0.883289100501424 Functional Loss - VDAC2 ENSG00000165637 CDS Human protein_coding chr10:76982014 chr10:76982014 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_4876 0 0 1 0 1 VDAC2 chr10:76982010 3'AG 76982010 Downstream 5bp 4764 chr12 16050940 16050940 1 + G A GBM 16050940 + 16050920 16050960 41 ATAAGTATGATTATAATAGTGGAGAAGAATTAGGTGAGTTG ATAAGTATGATTATAATAGTAGAGAAGAATTAGGTGAGTTG Direct Loss 0.94164121838329 0 NA NA prediction 0.883282436766581 Functional Loss - STRAP ENSG00000023734 CDS Human protein_coding chr12:16050940 chr12:16050940 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4877 0 0 1 0 1 STRAP chr12:16050952 5'GT 16050952 Upstream 13bp 4765 chr6 139363874 139363874 1 + G T SARC 139363874 + 139363854 139363894 41 AGATGCTGATGGAAAGTTAAGCGTGAAATTTGGGGTCCTCT AGATGCTGATGGAAAGTTAATCGTGAAATTTGGGGTCCTCT Direct Loss 0.941632265897013 0 NA NA prediction 0.883264531794026 Functional Loss - ABRACL ENSG00000146386 CDS Human protein_coding chr6:139363874 chr6:139363874 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_4879 0 0 1 0 1 ABRACL chr6:139363856 3'AG 139363856 Downstream 19bp 4766 chr9 102606952 102606952 1 + G A UCEC 102606952 + 102606932 102606972 41 ACTGTCCCACTGACCAGGCTGCTGCAGGCACAGATGCTGAG ACTGTCCCACTGACCAGGCTACTGCAGGCACAGATGCTGAG Direct Loss 0.941619779549491 0 NA NA prediction 0.883239559098982 Functional Loss - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102606952 chr9:102606952 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_4880 0 0 0 0 1 NR4A3 chr9:102606931 3'AG 102606931 Downstream 22bp 4767 chr16 31196454 31196454 1 + G A LUAD 31196454 + 31196434 31196474 41 ACCGCAGCAGTGGTGGCTATGAACCCAGAGGTCGTGGAGGT ACCGCAGCAGTGGTGGCTATAAACCCAGAGGTCGTGGAGGT Direct Loss 0.941606346337203 0 NA NA prediction 0.883212692674406 Functional Loss - FUS ENSG00000089280 CDS Human protein_coding chr16:31196454 chr16:31196454 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4881 0 0 1 0 1 FUS chr16:31196500 5'GT 31196500 Upstream 47bp 4768 chr6 80745010 80745010 1 + G T COAD 80745010 + 80744990 80745030 41 ACGGACCAGTACATCTACATGGTAATGGAGTGTGGAAATAT ACGGACCAGTACATCTACATTGTAATGGAGTGTGGAAATAT Direct Loss 0.941605180926731 0 NA NA prediction 0.883210361853463 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80745010 chr6:80745010 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4882 0 0 1 0 1 TTK chr6:80744983 3'AG 80744983 Downstream 28bp 4769 chr6 108676907 108676907 1 + G T UCEC 108676907 + 108676887 108676927 41 TTTTATGCTTATGTGGAAATGAAGAGGAAAAAACGGGTTCA TTTTATGCTTATGTGGAAATTAAGAGGAAAAAACGGGTTCA Direct Loss 0.941603029339577 0 NA NA prediction 0.883206058679155 Functional Loss - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108676907 chr6:108676907 nonsynonymous SNV 0.984 0 21 hm7G_associated_SNPs_4883 0 0 1 0 2 AFG1L chr6:108676858 3'AG 108676858 Downstream 50bp 4770 chr6 108676907 108676907 1 + G T UCEC 108676907 + 108676887 108676927 41 TTTTATGCTTATGTGGAAATGAAGAGGAAAAAACGGGTTCA TTTTATGCTTATGTGGAAATTAAGAGGAAAAAACGGGTTCA Direct Loss 0.941603029339577 0 NA NA prediction 0.883206058679155 Functional Loss - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108676907 chr6:108676907 nonsynonymous SNV 0.984 0 21 hm7G_associated_SNPs_4883 0 0 1 0 2 AFG1L chr6:108676959 5'GT 108676959 Upstream 53bp 4771 chr19 44038580 44038580 1 + G T UCEC 44038580 + 44038560 44038600 41 TCCTGTGCCAGCAAGATGCTGGAGCGAGGCGCGGAGTCCGC TCCTGTGCCAGCAAGATGCTTGAGCGAGGCGCGGAGTCCGC Direct Loss 0.941600422332908 0 NA NA prediction 0.883200844665816 Functional Loss - ZNF575 ENSG00000176472 CDS Human protein_coding chr19:44038580 chr19:44038580 synonymous SNV . 0 21 hm7G_associated_SNPs_4886 0 0 0 0 2 ZNF575 chr19:44038489 3'AG 44038489 Downstream 92bp 4772 chr19 44038580 44038580 1 + G T UCEC 44038580 + 44038560 44038600 41 TCCTGTGCCAGCAAGATGCTGGAGCGAGGCGCGGAGTCCGC TCCTGTGCCAGCAAGATGCTTGAGCGAGGCGCGGAGTCCGC Direct Loss 0.941600422332908 0 NA NA prediction 0.883200844665816 Functional Loss - ZNF575 ENSG00000176472 CDS Human protein_coding chr19:44038580 chr19:44038580 synonymous SNV . 0 21 hm7G_associated_SNPs_4886 0 0 0 0 2 ZNF575 chr19:44038653 5'GT 44038653 Upstream 74bp 4773 chr1 1267054 1267054 1 + G C BLCA 1267054 + 1267034 1267074 41 CTGCTCTGGGCACTGGCCATGAAAATGGCCGTGGAGGAGAT CTGCTCTGGGCACTGGCCATCAAAATGGCCGTGGAGGAGAT Direct Loss 0.941593676025061 0 NA NA prediction 0.883187352050122 Functional Loss - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1267054 chr1:1267054 nonsynonymous SNV 0.607 2 21 hm7G_associated_SNPs_4887 0 0 0 0 1 TAS1R3 chr1:1267018 3'AG 1267018 Downstream 37bp 4774 chr8 41399411 41399411 1 + G A LUAD 41399411 + 41399391 41399431 41 TGGTAGAACCAGACACAGATGAGCAGAGGTGAGTGGCGTGC TGGTAGAACCAGACACAGATAAGCAGAGGTGAGTGGCGTGC Direct Loss 0.941577762049577 0 NA NA prediction 0.883155524099155 Functional Loss - GINS4 ENSG00000147536 CDS Human protein_coding chr8:41399411 chr8:41399411 nonsynonymous SNV 0.918 1 21 hm7G_associated_SNPs_4888 0 0 1 0 2 GINS4 chr8:41399328 3'AG 41399328 Downstream 84bp 4775 chr8 41399411 41399411 1 + G A LUAD 41399411 + 41399391 41399431 41 TGGTAGAACCAGACACAGATGAGCAGAGGTGAGTGGCGTGC TGGTAGAACCAGACACAGATAAGCAGAGGTGAGTGGCGTGC Direct Loss 0.941577762049577 0 NA NA prediction 0.883155524099155 Functional Loss - GINS4 ENSG00000147536 CDS Human protein_coding chr8:41399411 chr8:41399411 nonsynonymous SNV 0.918 1 21 hm7G_associated_SNPs_4888 0 0 1 0 2 GINS4 chr8:41399418 5'GT 41399418 Upstream 8bp 4776 chr17 45299052 45299052 1 + G A SKCM 45299052 + 45299032 45299072 41 CCCTGCCTGCCTGAAGAGATGAATGTCAAGATGCTGGACTT CCCTGCCTGCCTGAAGAGATAAATGTCAAGATGCTGGACTT Direct Loss 0.94155910670262 0 NA NA prediction 0.88311821340524 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299052 chr17:45299052 nonsynonymous SNV 0.937 3 21 hm7G_associated_SNPs_4890 0 0 0 0 1 MYL4 chr17:45299048 3'AG 45299048 Downstream 5bp 4777 chr20 31427602 31427602 1 + G A rs76177175 31427602 + 31427582 31427622 41 CCTAAGGCTGGCCCTGGTGTGGTGCGAAAGAACCCTGGTGT CCTAAGGCTGGCCCTGGTGTAGTGCGAAAGAACCCTGGTGT Direct Loss 0.941556663028689 0 NA NA prediction 0.883113326057379 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31427602 chr20:31427602 synonymous SNV . 0 21 hm7G_associated_SNPs_4892 0 0 1 0 2 MAPRE1 chr20:31427541 3'AG 31427541 Downstream 62bp 4778 chr20 31427602 31427602 1 + G A rs76177175 31427602 + 31427582 31427622 41 CCTAAGGCTGGCCCTGGTGTGGTGCGAAAGAACCCTGGTGT CCTAAGGCTGGCCCTGGTGTAGTGCGAAAGAACCCTGGTGT Direct Loss 0.941556663028689 0 NA NA prediction 0.883113326057379 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31427602 chr20:31427602 synonymous SNV . 0 21 hm7G_associated_SNPs_4892 0 0 1 0 2 MAPRE1 chr20:31427662 5'GT 31427662 Upstream 61bp 4779 chr8 66992776 66992776 1 + G A SKCM 66992776 + 66992756 66992796 41 GAGCAGATCAAGTCTGACATGGAAAAAGGTGGGGTAGGATG GAGCAGATCAAGTCTGACATAGAAAAAGGTGGGGTAGGATG Direct Loss 0.941550845133648 0 NA NA prediction 0.883101690267295 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66992776 chr8:66992776 nonsynonymous SNV 0.964 0 21 hm7G_associated_SNPs_4894 0 0 0 0 1 DNAJC5B chr8:66992783 5'GT 66992783 Upstream 8bp 4780 chr8 87165113 87165113 1 + G A STAD 87165113 + 87165093 87165133 41 TTTTATGCATATGTAAAGCTGAAGGAACAGGAAATTAGAAA TTTTATGCATATGTAAAGCTAAAGGAACAGGAAATTAGAAA Direct Loss 0.941538435743888 0 NA NA prediction 0.883076871487776 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87165113 chr8:87165113 synonymous SNV . 0 21 hm7G_associated_SNPs_4895 0 0 0 0 1 ATP6V0D2 chr8:87165045 3'AG 87165045 Downstream 69bp 4781 chr12 96259141 96259141 1 + G A LUSC 96259141 + 96259121 96259161 41 ACATAGATGGAGCTTTGTCTGGACATCTGGGTGAAGTTTTA ACATAGATGGAGCTTTGTCTAGACATCTGGGTGAAGTTTTA Direct Loss 0.941512191778439 0 NA NA prediction 0.883024383556878 Functional Loss - SNRPF ENSG00000139343 CDS Human protein_coding chr12:96259141 chr12:96259141 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4897 0 0 1 0 2 SNRPF chr12:96259102 3'AG 96259102 Downstream 40bp 4782 chr12 96259141 96259141 1 + G A LUSC 96259141 + 96259121 96259161 41 ACATAGATGGAGCTTTGTCTGGACATCTGGGTGAAGTTTTA ACATAGATGGAGCTTTGTCTAGACATCTGGGTGAAGTTTTA Direct Loss 0.941512191778439 0 NA NA prediction 0.883024383556878 Functional Loss - SNRPF ENSG00000139343 CDS Human protein_coding chr12:96259141 chr12:96259141 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4897 0 0 1 0 2 SNRPF chr12:96259166 5'GT 96259166 Upstream 26bp 4783 chr19 35524447 35524447 1 + G A UCEC 35524447 + 35524427 35524467 41 TTGCAGCTGGAGGAGGATGAGCGCTTCGAGGGCCGCGTGGT TTGCAGCTGGAGGAGGATGAACGCTTCGAGGGCCGCGTGGT Direct Loss 0.941506817922382 0 NA NA prediction 0.883013635844763 Functional Loss - SCN1B ENSG00000105711 CDS Human protein_coding chr19:35524447 chr19:35524447 synonymous SNV . 0 21 hm7G_associated_SNPs_4898 0 0 1 0 1 SCN1B chr19:35524403 3'AG 35524403 Downstream 45bp 4784 chr15 27128518 27128518 1 + G A COAD 27128518 + 27128498 27128538 41 CGTGTTTTTCCGACAAAGCTGGAAAGATGAAAGGCTTCGGT CGTGTTTTTCCGACAAAGCTAGAAAGATGAAAGGCTTCGGT Direct Loss 0.941499202684082 0 NA NA prediction 0.882998405368163 Functional Loss - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128518 chr15:27128518 stopgain 1.000 1 21 hm7G_associated_SNPs_4901 0 0 0 0 1 GABRA5 chr15:27128484 3'AG 27128484 Downstream 35bp 4785 chr14 68113731 68113731 1 + G A HNSC 68113731 + 68113711 68113751 41 ATGGAACGAACATTTGATCTGCTGATTGGCAAGTAAGTAAC ATGGAACGAACATTTGATCTACTGATTGGCAAGTAAGTAAC Direct Loss 0.941483848639405 0 NA NA prediction 0.88296769727881 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68113731 chr14:68113731 synonymous SNV . 0 21 hm7G_associated_SNPs_4903 0 0 0 0 2 ARG2 chr14:68113638 3'AG 68113638 Downstream 94bp 4786 chr14 68113731 68113731 1 + G A HNSC 68113731 + 68113711 68113751 41 ATGGAACGAACATTTGATCTGCTGATTGGCAAGTAAGTAAC ATGGAACGAACATTTGATCTACTGATTGGCAAGTAAGTAAC Direct Loss 0.941483848639405 0 NA NA prediction 0.88296769727881 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68113731 chr14:68113731 synonymous SNV . 0 21 hm7G_associated_SNPs_4903 0 0 0 0 2 ARG2 chr14:68113742 5'GT 68113742 Upstream 12bp 4787 chr17 61908968 61908968 1 + G A OV 61908968 + 61908948 61908988 41 TGCCAGGAGCATCAGGGGCTGAAGTGAAGGTAATTGGAGTA TGCCAGGAGCATCAGGGGCTAAAGTGAAGGTAATTGGAGTA Direct Loss 0.941475629810247 0 NA NA prediction 0.882951259620495 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908968 chr17:61908968 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_4904 0 0 1 0 1 PSMC5 chr17:61908976 5'GT 61908976 Upstream 9bp 4788 chr2 54365808 54365808 1 + G T LUAD 54365808 + 54365788 54365828 41 GAAGCTAGGAAAATAGGAGTGGTTGGCTGGGTGAAGAATAC GAAGCTAGGAAAATAGGAGTTGTTGGCTGGGTGAAGAATAC Direct Loss 0.941465311167964 0 NA NA prediction 0.882930622335928 Functional Loss - ACYP2 ENSG00000170634 CDS Human protein_coding chr2:54365808 chr2:54365808 synonymous SNV . 0 21 hm7G_associated_SNPs_4905 0 0 1 0 2 ACYP2 chr2:54365776 3'AG 54365776 Downstream 33bp 4789 chr2 54365808 54365808 1 + G T LUAD 54365808 + 54365788 54365828 41 GAAGCTAGGAAAATAGGAGTGGTTGGCTGGGTGAAGAATAC GAAGCTAGGAAAATAGGAGTTGTTGGCTGGGTGAAGAATAC Direct Loss 0.941465311167964 0 NA NA prediction 0.882930622335928 Functional Loss - ACYP2 ENSG00000170634 CDS Human protein_coding chr2:54365808 chr2:54365808 synonymous SNV . 0 21 hm7G_associated_SNPs_4905 0 0 1 0 2 ACYP2 chr2:54365885 5'GT 54365885 Upstream 78bp 4790 chr14 76488695 76488695 1 + G A HNSC 76488695 + 76488675 76488715 41 CTCTGCTAAATTACCTCGCTGCCGACAGGGAGGCTGGGCAG CTCTGCTAAATTACCTCGCTACCGACAGGGAGGCTGGGCAG Direct Loss 0.941461473029227 0 NA NA prediction 0.882922946058453 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76488695 chr14:76488695 nonsynonymous SNV 0.005 2 21 hm7G_associated_SNPs_4907 0 0 1 1 2 IFT43 chr14:76488670 3'AG 76488670 Downstream 26bp 4791 chr14 76488695 76488695 1 + G A HNSC 76488695 + 76488675 76488715 41 CTCTGCTAAATTACCTCGCTGCCGACAGGGAGGCTGGGCAG CTCTGCTAAATTACCTCGCTACCGACAGGGAGGCTGGGCAG Direct Loss 0.941461473029227 0 NA NA prediction 0.882922946058453 Functional Loss - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76488695 chr14:76488695 nonsynonymous SNV 0.005 2 21 hm7G_associated_SNPs_4907 0 0 1 1 2 IFT43 chr14:76488737 5'GT 76488737 Upstream 43bp 4792 chr14 89338020 89338020 1 + G A LUAD 89338020 + 89338000 89338040 41 CCCTTTCTTTGGCTGAAAATGAAGAAGAGGCAGCTGATGTC CCCTTTCTTTGGCTGAAAATAAAGAAGAGGCAGCTGATGTC Direct Loss 0.941460762417021 0 NA NA prediction 0.882921524834041 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89338020 chr14:89338020 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4908 0 0 1 0 1 TTC8 chr14:89338067 5'GT 89338067 Upstream 48bp 4793 chr10 99511211 99511211 1 + G T SARC 99511211 + 99511191 99511231 41 CAGATGAAGAGTTTAAAGATGCGATTGAGGTGGGTGGCCCT CAGATGAAGAGTTTAAAGATTCGATTGAGGTGGGTGGCCCT Direct Loss 0.941458197400447 0 NA NA prediction 0.882916394800895 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99511211 chr10:99511211 nonsynonymous SNV 0.988 3 21 hm7G_associated_SNPs_4909 0 0 1 0 2 ZFYVE27 chr10:99511148 3'AG 99511148 Downstream 64bp 4794 chr10 99511211 99511211 1 + G T SARC 99511211 + 99511191 99511231 41 CAGATGAAGAGTTTAAAGATGCGATTGAGGTGGGTGGCCCT CAGATGAAGAGTTTAAAGATTCGATTGAGGTGGGTGGCCCT Direct Loss 0.941458197400447 0 NA NA prediction 0.882916394800895 Functional Loss - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99511211 chr10:99511211 nonsynonymous SNV 0.988 3 21 hm7G_associated_SNPs_4909 0 0 1 0 2 ZFYVE27 chr10:99511219 5'GT 99511219 Upstream 9bp 4795 chr20 39974446 39974446 1 + G T COAD 39974446 + 39974426 39974466 41 TCTTTGCCAGCACCAGCCATGAACTACGTGGGGCAGCTGGC TCTTTGCCAGCACCAGCCATTAACTACGTGGGGCAGCTGGC Direct Loss 0.941448748748559 0 NA NA prediction 0.882897497497118 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974446 chr20:39974446 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_4910 0 0 1 0 1 LPIN3 chr20:39974436 3'AG 39974436 Downstream 11bp 4796 chr5 52778769 52778769 1 + G T BLCA 52778769 + 52778749 52778789 41 GCCAGGTCCTGTACAAGACCGAACTGAGCAAGGAGGAGTGC GCCAGGTCCTGTACAAGACCTAACTGAGCAAGGAGGAGTGC Direct Loss 0.941431022888704 0 NA NA prediction 0.882862045777408 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52778769 chr5:52778769 stopgain 0.998 1 21 hm7G_associated_SNPs_4911 0 0 1 0 1 FST chr5:52778710 3'AG 52778710 Downstream 60bp 4797 chr1 25810643 25810643 1 + G A rs570757847 25810643 + 25810623 25810663 41 AAAAAGTTAAAGGCTGACCTGCAAGCCAGCAGACAAGTGGA AAAAAGTTAAAGGCTGACCTACAAGCCAGCAGACAAGTGGA Direct Loss 0.941424476173733 0 NA NA prediction 0.882848952347467 Functional Loss - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25810643 chr1:25810643 synonymous SNV . 0 21 hm7G_associated_SNPs_4913 0 0 1 0 1 TMEM57 chr1:25810607 3'AG 25810607 Downstream 37bp 4798 chr6 16143386 16143386 1 + G T HNSC 16143386 + 16143366 16143406 41 GATAGCGAAGGGCAGAAACTGCTCATTGGGGTTGGACCTGA GATAGCGAAGGGCAGAAACTTCTCATTGGGGTTGGACCTGA Direct Loss 0.941411843613462 0 NA NA prediction 0.882823687226924 Functional Loss - MYLIP ENSG00000007944 CDS Human protein_coding chr6:16143386 chr6:16143386 synonymous SNV . 0 21 hm7G_associated_SNPs_4915 0 0 1 0 1 MYLIP chr6:16143448 5'GT 16143448 Upstream 63bp 4799 chr11 64802344 64802344 1 + G T UCEC 64802344 + 64802324 64802364 41 TTTGAAGCCTCAGTGATCGAGGAGCGGCGAAAGGGGGCAGA TTTGAAGCCTCAGTGATCGATGAGCGGCGAAAGGGGGCAGA Direct Loss 0.941399771866523 0 NA NA prediction 0.882799543733047 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802344 chr11:64802344 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4916 0 0 1 0 2 SNX15 chr11:64802319 3'AG 64802319 Downstream 26bp 4800 chr11 64802344 64802344 1 + G T UCEC 64802344 + 64802324 64802364 41 TTTGAAGCCTCAGTGATCGAGGAGCGGCGAAAGGGGGCAGA TTTGAAGCCTCAGTGATCGATGAGCGGCGAAAGGGGGCAGA Direct Loss 0.941399771866523 0 NA NA prediction 0.882799543733047 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64802344 chr11:64802344 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_4916 0 0 1 0 2 SNX15 chr11:64802434 5'GT 64802434 Upstream 91bp 4801 chr5 151176822 151176822 1 + G T SARC 151176822 + 151176802 151176842 41 AACATTTAGAGGAGCCTGTTGCTGAACCAGAGCCTGATCCT AACATTTAGAGGAGCCTGTTTCTGAACCAGAGCCTGATCCT Direct Loss 0.94139942001338 0 NA NA prediction 0.88279884002676 Functional Loss - G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151176822 chr5:151176822 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_4917 0 0 1 0 2 G3BP1 chr5:151176788 3'AG 151176788 Downstream 35bp 4802 chr5 151176822 151176822 1 + G T SARC 151176822 + 151176802 151176842 41 AACATTTAGAGGAGCCTGTTGCTGAACCAGAGCCTGATCCT AACATTTAGAGGAGCCTGTTTCTGAACCAGAGCCTGATCCT Direct Loss 0.94139942001338 0 NA NA prediction 0.88279884002676 Functional Loss - G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151176822 chr5:151176822 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_4917 0 0 1 0 2 G3BP1 chr5:151176899 5'GT 151176899 Upstream 78bp 4803 chr17 6690652 6690652 1 + G A BRCA 6690652 + 6690632 6690672 41 CAAACAGATATGAGACGAATGAAGAGGACAAGACCCTGCAG CAAACAGATATGAGACGAATAAAGAGGACAAGACCCTGCAG Direct Loss 0.941360031860926 0 NA NA prediction 0.882720063721853 Functional Loss - FBXO39 ENSG00000177294 CDS Human protein_coding chr17:6690652 chr17:6690652 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_4922 0 0 0 0 1 FBXO39 chr17:6690619 3'AG 6690619 Downstream 34bp 4804 chr1 78392509 78392509 1 + G A UCEC 78392509 + 78392489 78392529 41 AAGAAAACCGAAAGAAGCAAGCTGAAGAGGAAGCAAGAAAA AAGAAAACCGAAAGAAGCAAACTGAAGAGGAAGCAAGAAAA Direct Loss 0.941358376019694 0 NA NA prediction 0.882716752039388 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78392509 chr1:78392509 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4923 0 0 0 0 1 NEXN chr1:78392577 5'GT 78392577 Upstream 69bp 4805 chr17 7126044 7126044 1 + G C BLCA 7126044 + 7126024 7126064 41 ACACAGCAGAGGTGTTCTTTGATGGAGTACGGGTGCCATCG ACACAGCAGAGGTGTTCTTTCATGGAGTACGGGTGCCATCG Direct Loss 0.941340154964187 0 NA NA prediction 0.882680309928375 Functional Loss - ACADVL ENSG00000072778 CDS Human protein_coding chr17:7126044 chr17:7126044 nonsynonymous SNV 0.985 4 21 hm7G_associated_SNPs_4924 0 0 1 4 1 ACADVL chr17:7125986 3'AG 7125986 Downstream 59bp 4806 chr17 37359337 37359337 1 + G A LUSC 37359337 + 37359317 37359357 41 GGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGC GGCTGCTCAGAAGATACCGTAAATCTAAGAAGATCGATCGC Direct Loss 0.941338760977042 0 NA NA prediction 0.882677521954085 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359337 chr17:37359337 nonsynonymous SNV 0.444 2 21 hm7G_associated_SNPs_4925 0 0 1 0 2 RPL19 chr17:37359242 3'AG 37359242 Downstream 96bp 4807 chr17 37359337 37359337 1 + G A LUSC 37359337 + 37359317 37359357 41 GGCTGCTCAGAAGATACCGTGAATCTAAGAAGATCGATCGC GGCTGCTCAGAAGATACCGTAAATCTAAGAAGATCGATCGC Direct Loss 0.941338760977042 0 NA NA prediction 0.882677521954085 Functional Loss - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37359337 chr17:37359337 nonsynonymous SNV 0.444 2 21 hm7G_associated_SNPs_4925 0 0 1 0 2 RPL19 chr17:37359362 5'GT 37359362 Upstream 26bp 4808 chr11 63721519 63721519 1 + G A UCEC 63721519 + 63721499 63721539 41 CAGTTCTTCAGAGAAGCGTTGCAGTAAGGAGCTGGGTGTGG CAGTTCTTCAGAGAAGCGTTACAGTAAGGAGCTGGGTGTGG Direct Loss 0.941338709533483 0 NA NA prediction 0.882677419066966 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63721519 chr11:63721519 synonymous SNV . 0 21 hm7G_associated_SNPs_4926 0 0 1 1 2 NAA40 chr11:63721444 3'AG 63721444 Downstream 76bp 4809 chr11 63721519 63721519 1 + G A UCEC 63721519 + 63721499 63721539 41 CAGTTCTTCAGAGAAGCGTTGCAGTAAGGAGCTGGGTGTGG CAGTTCTTCAGAGAAGCGTTACAGTAAGGAGCTGGGTGTGG Direct Loss 0.941338709533483 0 NA NA prediction 0.882677419066966 Functional Loss - NAA40 ENSG00000110583 CDS Human protein_coding chr11:63721519 chr11:63721519 synonymous SNV . 0 21 hm7G_associated_SNPs_4926 0 0 1 1 2 NAA40 chr11:63721521 5'GT 63721521 Upstream 3bp 4810 chr12 53410310 53410310 1 + G T CESC 53410310 + 53410290 53410330 41 CCCTAACAGACTTTCTGGCTGAGGATGGGGGTACTGGTGGA CCCTAACAGACTTTCTGGCTTAGGATGGGGGTACTGGTGGA Direct Loss 0.941334665079436 0 NA NA prediction 0.882669330158872 Functional Loss - EIF4B ENSG00000063046 CDS Human protein_coding chr12:53410310 chr12:53410310 stopgain 1.000 1 21 hm7G_associated_SNPs_4927 0 0 0 0 2 EIF4B chr12:53410257 3'AG 53410257 Downstream 54bp 4811 chr12 53410310 53410310 1 + G T CESC 53410310 + 53410290 53410330 41 CCCTAACAGACTTTCTGGCTGAGGATGGGGGTACTGGTGGA CCCTAACAGACTTTCTGGCTTAGGATGGGGGTACTGGTGGA Direct Loss 0.941334665079436 0 NA NA prediction 0.882669330158872 Functional Loss - EIF4B ENSG00000063046 CDS Human protein_coding chr12:53410310 chr12:53410310 stopgain 1.000 1 21 hm7G_associated_SNPs_4927 0 0 0 0 2 EIF4B chr12:53410394 5'GT 53410394 Upstream 85bp 4812 chr12 118465780 118465780 1 + G A UCEC 118465780 + 118465760 118465800 41 ATTACAGAGTTGAAAACTCTGAAGGGGTTGGCACTGCATGA ATTACAGAGTTGAAAACTCTAAAGGGGTTGGCACTGCATGA Direct Loss 0.941307433000465 0 NA NA prediction 0.88261486600093 Functional Loss - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465780 chr12:118465780 synonymous SNV . 0 21 hm7G_associated_SNPs_4929 0 0 1 0 3 RFC5 chr12:118465758 3'AG 118465758 Downstream 23bp 4813 chr12 118465780 118465780 1 + G A UCEC 118465780 + 118465760 118465800 41 ATTACAGAGTTGAAAACTCTGAAGGGGTTGGCACTGCATGA ATTACAGAGTTGAAAACTCTAAAGGGGTTGGCACTGCATGA Direct Loss 0.941307433000465 0 NA NA prediction 0.88261486600093 Functional Loss - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465780 chr12:118465780 synonymous SNV . 0 21 hm7G_associated_SNPs_4929 0 0 1 0 3 RFC5 chr12:118465767 3'AG 118465767 Downstream 14bp 4814 chr12 118465780 118465780 1 + G A UCEC 118465780 + 118465760 118465800 41 ATTACAGAGTTGAAAACTCTGAAGGGGTTGGCACTGCATGA ATTACAGAGTTGAAAACTCTAAAGGGGTTGGCACTGCATGA Direct Loss 0.941307433000465 0 NA NA prediction 0.88261486600093 Functional Loss - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118465780 chr12:118465780 synonymous SNV . 0 21 hm7G_associated_SNPs_4929 0 0 1 0 3 RFC5 chr12:118465835 5'GT 118465835 Upstream 56bp 4815 chr17 56277680 56277680 1 + G A SKCM 56277680 + 56277660 56277700 41 GATGAGCTCCGGGACCGGCTGTTTCGGCAAGTGAGGAGGAT GATGAGCTCCGGGACCGGCTATTTCGGCAAGTGAGGAGGAT Direct Loss 0.941305565840419 0 NA NA prediction 0.882611131680838 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56277680 chr17:56277680 synonymous SNV . 0 21 hm7G_associated_SNPs_4930 0 0 0 0 2 EPX chr17:56277586 3'AG 56277586 Downstream 95bp 4816 chr17 56277680 56277680 1 + G A SKCM 56277680 + 56277660 56277700 41 GATGAGCTCCGGGACCGGCTGTTTCGGCAAGTGAGGAGGAT GATGAGCTCCGGGACCGGCTATTTCGGCAAGTGAGGAGGAT Direct Loss 0.941305565840419 0 NA NA prediction 0.882611131680838 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56277680 chr17:56277680 synonymous SNV . 0 21 hm7G_associated_SNPs_4930 0 0 0 0 2 EPX chr17:56277756 5'GT 56277756 Upstream 77bp 4817 chr11 1901341 1901341 1 + G T UCEC 1901341 + 1901321 1901361 41 ACTGCTCAGTGGAGCGTGGAGGACGAGGAGGAGGCCGTCCA ACTGCTCAGTGGAGCGTGGATGACGAGGAGGAGGCCGTCCA Direct Loss 0.941290334684405 0 NA NA prediction 0.882580669368811 Functional Loss - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1901341 chr11:1901341 nonsynonymous SNV 0.095 0 21 hm7G_associated_SNPs_4931 0 0 0 0 1 LSP1 chr11:1901317 3'AG 1901317 Downstream 25bp 4818 chr19 6750053 6750053 1 + G A SKCM 6750053 + 6750033 6750073 41 CTGAGCAACATTGAACGGCTGAAATTGGAAGTGCAGAAGTA CTGAGCAACATTGAACGGCTAAAATTGGAAGTGCAGAAGTA Direct Loss 0.941279060951813 0 NA NA prediction 0.882558121903626 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750053 chr19:6750053 synonymous SNV . 0 21 hm7G_associated_SNPs_4933 0 0 1 1 1 TRIP10 chr19:6750077 5'GT 6750077 Upstream 25bp 4819 chr20 18462374 18462374 1 + G A UCS 18462374 + 18462354 18462394 41 GCACAGTTGGCAGTGTAGATGGACACATGAAACTGTACAGG GCACAGTTGGCAGTGTAGATAGACACATGAAACTGTACAGG Direct Loss 0.94126838521014 0 NA NA prediction 0.88253677042028 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18462374 chr20:18462374 nonsynonymous SNV 0.977 2 21 hm7G_associated_SNPs_4934 0 0 1 1 1 POLR3F chr20:18462454 5'GT 18462454 Upstream 81bp 4820 chr2 184024345 184024345 1 + G A GBM 184024345 + 184024325 184024365 41 TTTCTACCATGAGACCTCTTGCTACAGCATACAAAGCCTCT TTTCTACCATGAGACCTCTTACTACAGCATACAAAGCCTCT Direct Loss 0.941260109959122 0 NA NA prediction 0.882520219918243 Functional Loss - NUP35 ENSG00000163002 CDS Human protein_coding chr2:184024345 chr2:184024345 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4936 0 0 1 0 1 NUP35 chr2:184024380 5'GT 184024380 Upstream 36bp 4821 chr16 56624781 56624781 1 + G A COAD 56624781 + 56624761 56624801 41 CCTGCTGCCCTGCGGAGTGTGAGAAGTGTGCCAAGGACTGT CCTGCTGCCCTGCGGAGTGTAAGAAGTGTGCCAAGGACTGT Direct Loss 0.941254925216631 0 NA NA prediction 0.882509850433262 Functional Loss - MT3 ENSG00000087250 CDS Human protein_coding chr16:56624781 chr16:56624781 nonsynonymous SNV 0.949 0 21 hm7G_associated_SNPs_4938 0 0 0 3 1 MT3 chr16:56624752 3'AG 56624752 Downstream 30bp 4822 chr6 134212865 134212865 1 + G T CESC 134212865 + 134212845 134212885 41 CCGCAGACGTGGCCCTTTATGGTGGCCGGGAAACCCGAGAG CCGCAGACGTGGCCCTTTATTGTGGCCGGGAAACCCGAGAG Direct Loss 0.941236597697396 0 NA NA prediction 0.882473195394792 Functional Loss - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134212865 chr6:134212865 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4941 0 0 0 0 2 TCF21 chr6:134212851 3'AG 134212851 Downstream 15bp 4823 chr6 134212865 134212865 1 + G T CESC 134212865 + 134212845 134212885 41 CCGCAGACGTGGCCCTTTATGGTGGCCGGGAAACCCGAGAG CCGCAGACGTGGCCCTTTATTGTGGCCGGGAAACCCGAGAG Direct Loss 0.941236597697396 0 NA NA prediction 0.882473195394792 Functional Loss - TCF21 ENSG00000118526 CDS Human antisense chr6:134212865 chr6:134212865 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4941 0 0 0 0 2 TCF21 chr6:134212948 5'GT 134212948 Upstream 84bp 4824 chr8 48878778 48878778 1 + G A rs138095027 48878778 + 48878758 48878798 41 CTCATCACCATCAGCGGCATGGTGATCAGGACATCCCAGCT CTCATCACCATCAGCGGCATAGTGATCAGGACATCCCAGCT Direct Loss 0.941228692122205 0 NA NA prediction 0.88245738424441 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48878778 chr8:48878778 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4943 0 0 1 0 1 MCM4 chr8:48878747 3'AG 48878747 Downstream 32bp 4825 chr20 31813000 31813000 1 + G A BLCA 31813000 + 31812980 31813020 41 TTTGGCCGGAGGGATCTGGTGATAGGCAAATGCGATGCAGA TTTGGCCGGAGGGATCTGGTAATAGGCAAATGCGATGCAGA Direct Loss 0.941213579267002 0 NA NA prediction 0.882427158534005 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31813000 chr20:31813000 synonymous SNV . 0 21 hm7G_associated_SNPs_4944 0 0 0 0 2 BPIFA3 chr20:31812904 3'AG 31812904 Downstream 97bp 4826 chr20 31813000 31813000 1 + G A BLCA 31813000 + 31812980 31813020 41 TTTGGCCGGAGGGATCTGGTGATAGGCAAATGCGATGCAGA TTTGGCCGGAGGGATCTGGTAATAGGCAAATGCGATGCAGA Direct Loss 0.941213579267002 0 NA NA prediction 0.882427158534005 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31813000 chr20:31813000 synonymous SNV . 0 21 hm7G_associated_SNPs_4944 0 0 0 0 2 BPIFA3 chr20:31813053 5'GT 31813053 Upstream 54bp 4827 chrX 52844169 52844169 1 + G T HNSC 52844169 + 52844149 52844189 41 CTCAGTCAAAGACTGGGGATGAATGCGGAGATAGTCCTGAT CTCAGTCAAAGACTGGGGATTAATGCGGAGATAGTCCTGAT Direct Loss 0.941208173431832 0 NA NA prediction 0.882416346863665 Functional Loss - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844169 chrX:52844169 stopgain 0.011 0 21 hm7G_associated_SNPs_4945 0 0 0 0 2 XAGE5 chrX:52844116 3'AG 52844116 Downstream 54bp 4828 chrX 52844169 52844169 1 + G T HNSC 52844169 + 52844149 52844189 41 CTCAGTCAAAGACTGGGGATGAATGCGGAGATAGTCCTGAT CTCAGTCAAAGACTGGGGATTAATGCGGAGATAGTCCTGAT Direct Loss 0.941208173431832 0 NA NA prediction 0.882416346863665 Functional Loss - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844169 chrX:52844169 stopgain 0.011 0 21 hm7G_associated_SNPs_4945 0 0 0 0 2 XAGE5 chrX:52844241 5'GT 52844241 Upstream 73bp 4829 chr1 38025027 38025027 1 + G A UCEC 38025027 + 38025007 38025047 41 CAGGAGCAGTTAGACTTAAAGCTGCAGCAGCGGCAGGCCAG CAGGAGCAGTTAGACTTAAAACTGCAGCAGCGGCAGGCCAG Direct Loss 0.941169309965251 0 NA NA prediction 0.882338619930502 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38025027 chr1:38025027 synonymous SNV . 0 21 hm7G_associated_SNPs_4949 0 0 0 0 2 DNALI1 chr1:38024928 3'AG 38024928 Downstream 100bp 4830 chr1 38025027 38025027 1 + G A UCEC 38025027 + 38025007 38025047 41 CAGGAGCAGTTAGACTTAAAGCTGCAGCAGCGGCAGGCCAG CAGGAGCAGTTAGACTTAAAACTGCAGCAGCGGCAGGCCAG Direct Loss 0.941169309965251 0 NA NA prediction 0.882338619930502 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38025027 chr1:38025027 synonymous SNV . 0 21 hm7G_associated_SNPs_4949 0 0 0 0 2 DNALI1 chr1:38025097 5'GT 38025097 Upstream 71bp 4831 chr9 88590057 88590057 1 + G A KIRC 88590057 + 88590037 88590077 41 AAAGATGTGGAGGATGACATGCAAAGAAGAGTAAAGGTATA AAAGATGTGGAGGATGACATACAAAGAAGAGTAAAGGTATA Direct Loss 0.941152522308022 0 NA NA prediction 0.882305044616045 Functional Loss - NAA35 ENSG00000135040 CDS Human protein_coding chr9:88590057 chr9:88590057 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_4950 0 0 1 0 2 NAA35 chr9:88590029 3'AG 88590029 Downstream 29bp 4832 chr9 88590057 88590057 1 + G A KIRC 88590057 + 88590037 88590077 41 AAAGATGTGGAGGATGACATGCAAAGAAGAGTAAAGGTATA AAAGATGTGGAGGATGACATACAAAGAAGAGTAAAGGTATA Direct Loss 0.941152522308022 0 NA NA prediction 0.882305044616045 Functional Loss - NAA35 ENSG00000135040 CDS Human protein_coding chr9:88590057 chr9:88590057 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_4950 0 0 1 0 2 NAA35 chr9:88590072 5'GT 88590072 Upstream 16bp 4833 chr15 98513134 98513134 1 + G T LUAD 98513134 + 98513114 98513154 41 TATACATTCACATTCCTGGTGCTAAAAAATTGATGCTCGAA TATACATTCACATTCCTGGTTCTAAAAAATTGATGCTCGAA Direct Loss 0.941152247771887 0 NA NA prediction 0.882304495543774 Functional Loss - ARRDC4 ENSG00000140450 CDS Human protein_coding chr15:98513134 chr15:98513134 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_4951 0 0 1 0 1 ARRDC4 chr15:98513113 3'AG 98513113 Downstream 22bp 4834 chr7 12665419 12665419 1 + G T UCEC 12665419 + 12665399 12665439 41 ATCCCCAAGAGAGGAAGGCTGCAATGAAGACAGCTGAAGAA ATCCCCAAGAGAGGAAGGCTTCAATGAAGACAGCTGAAGAA Direct Loss 0.941151549462919 0 NA NA prediction 0.882303098925838 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12665419 chr7:12665419 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4952 0 0 1 2 2 SCIN chr7:12665387 3'AG 12665387 Downstream 33bp 4835 chr7 12665419 12665419 1 + G T UCEC 12665419 + 12665399 12665439 41 ATCCCCAAGAGAGGAAGGCTGCAATGAAGACAGCTGAAGAA ATCCCCAAGAGAGGAAGGCTTCAATGAAGACAGCTGAAGAA Direct Loss 0.941151549462919 0 NA NA prediction 0.882303098925838 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12665419 chr7:12665419 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4952 0 0 1 2 2 SCIN chr7:12665475 5'GT 12665475 Upstream 57bp 4836 chr16 67262736 67262736 1 + G A UCEC 67262736 + 67262716 67262756 41 ATCCTACTGACAGCCATCGTGCAGGTGCTCAGCTGCTTCTC ATCCTACTGACAGCCATCGTACAGGTGCTCAGCTGCTTCTC Direct Loss 0.941149852588866 0 NA NA prediction 0.882299705177731 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262736 chr16:67262736 synonymous SNV . 0 21 hm7G_associated_SNPs_4954 0 0 1 0 2 TMEM208 chr16:67262700 3'AG 67262700 Downstream 37bp 4837 chr16 67262736 67262736 1 + G A UCEC 67262736 + 67262716 67262756 41 ATCCTACTGACAGCCATCGTGCAGGTGCTCAGCTGCTTCTC ATCCTACTGACAGCCATCGTACAGGTGCTCAGCTGCTTCTC Direct Loss 0.941149852588866 0 NA NA prediction 0.882299705177731 Functional Loss - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262736 chr16:67262736 synonymous SNV . 0 21 hm7G_associated_SNPs_4954 0 0 1 0 2 TMEM208 chr16:67262784 5'GT 67262784 Upstream 49bp 4838 chr19 52723052 52723052 1 + G A UCS 52723052 + 52723032 52723072 41 CTGCCATTGTGGAGCTGGCTGAGGACGCCAAGTGGCGGGTG CTGCCATTGTGGAGCTGGCTAAGGACGCCAAGTGGCGGGTG Direct Loss 0.941148667726933 0 NA NA prediction 0.882297335453867 Functional Loss - PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52723052 chr19:52723052 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_4955 0 0 1 0 1 PPP2R1A chr19:52723117 5'GT 52723117 Upstream 66bp 4839 chr6 132189172 132189172 1 + G C LUSC 132189172 + 132189152 132189192 41 TCTTAGGTCATCAAAGCCTTGCAGAGGGTTGATGGTATGGT TCTTAGGTCATCAAAGCCTTCCAGAGGGTTGATGGTATGGT Direct Loss 0.94113257454633 0 NA NA prediction 0.882265149092659 Functional Loss - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132189172 chr6:132189172 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4957 0 0 1 0 2 ENPP1 chr6:132189158 3'AG 132189158 Downstream 15bp 4840 chr6 132189172 132189172 1 + G C LUSC 132189172 + 132189152 132189192 41 TCTTAGGTCATCAAAGCCTTGCAGAGGGTTGATGGTATGGT TCTTAGGTCATCAAAGCCTTCCAGAGGGTTGATGGTATGGT Direct Loss 0.94113257454633 0 NA NA prediction 0.882265149092659 Functional Loss - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132189172 chr6:132189172 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4957 0 0 1 0 2 ENPP1 chr6:132189266 5'GT 132189266 Upstream 95bp 4841 chr3 185344103 185344103 1 + G C CESC 185344103 + 185344083 185344123 41 TAGGAGATTCCTCAACAGCTGAATGGGAGTGATTGTGGAAT TAGGAGATTCCTCAACAGCTCAATGGGAGTGATTGTGGAAT Direct Loss 0.941123418248977 0 NA NA prediction 0.882246836497954 Functional Loss - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185344103 chr3:185344103 synonymous SNV . 0 21 hm7G_associated_SNPs_4958 0 0 1 0 2 SENP2 chr3:185344086 3'AG 185344086 Downstream 18bp 4842 chr3 185344103 185344103 1 + G C CESC 185344103 + 185344083 185344123 41 TAGGAGATTCCTCAACAGCTGAATGGGAGTGATTGTGGAAT TAGGAGATTCCTCAACAGCTCAATGGGAGTGATTGTGGAAT Direct Loss 0.941123418248977 0 NA NA prediction 0.882246836497954 Functional Loss - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185344103 chr3:185344103 synonymous SNV . 0 21 hm7G_associated_SNPs_4958 0 0 1 0 2 SENP2 chr3:185344181 5'GT 185344181 Upstream 79bp 4843 chr10 104650361 104650361 1 + G A GBM 104650361 + 104650341 104650381 41 TCTTGAAGAATTCAAGATTTGCTCAAGATTTTCTGATCAGA TCTTGAAGAATTCAAGATTTACTCAAGATTTTCTGATCAGA Direct Loss 0.94112288543539 0 NA NA prediction 0.88224577087078 Functional Loss - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104650361 chr10:104650361 nonsynonymous SNV 0.939 1 21 hm7G_associated_SNPs_4959 0 0 1 0 2 AS3MT chr10:104650301 3'AG 104650301 Downstream 61bp 4844 chr10 104650361 104650361 1 + G A GBM 104650361 + 104650341 104650381 41 TCTTGAAGAATTCAAGATTTGCTCAAGATTTTCTGATCAGA TCTTGAAGAATTCAAGATTTACTCAAGATTTTCTGATCAGA Direct Loss 0.94112288543539 0 NA NA prediction 0.88224577087078 Functional Loss - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104650361 chr10:104650361 nonsynonymous SNV 0.939 1 21 hm7G_associated_SNPs_4959 0 0 1 0 2 AS3MT chr10:104650435 5'GT 104650435 Upstream 75bp 4845 chr20 62648154 62648154 1 + G C HNSC 62648154 + 62648134 62648174 41 CCGTGATTGGGATTGGGATTGAGGAGGAAGATCGGAAGCAT CCGTGATTGGGATTGGGATTCAGGAGGAAGATCGGAAGCAT Direct Loss 0.941105961889978 0 NA NA prediction 0.882211923779956 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62648154 chr20:62648154 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_4961 0 0 1 0 1 PRPF6 chr20:62648076 3'AG 62648076 Downstream 79bp 4846 chr12 119617428 119617428 1 + G T SARC 119617428 + 119617408 119617448 41 AGTGTGTGTGAATGTGCACAGCTTCAAGCCAGAGGAGTTGA AGTGTGTGTGAATGTGCACATCTTCAAGCCAGAGGAGTTGA Direct Loss 0.941093981964679 0 NA NA prediction 0.882187963929358 Functional Loss - HSPB8 ENSG00000152137 CDS Human protein_coding chr12:119617428 chr12:119617428 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4963 0 0 0 0 1 HSPB8 chr12:119617484 5'GT 119617484 Upstream 57bp 4847 chr8 55370926 55370926 1 + G A STAD 55370926 + 55370906 55370946 41 CGGCCGATGAACGCTTTCATGGTGTGGGCTAAGGACGAGCG CGGCCGATGAACGCTTTCATAGTGTGGGCTAAGGACGAGCG Direct Loss 0.941075373283838 0 NA NA prediction 0.882150746567675 Functional Loss - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55370926 chr8:55370926 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_4964 0 0 0 0 1 SOX17 chr8:55371005 5'GT 55371005 Upstream 80bp 4848 chr19 13063804 13063804 1 + G A BLCA 13063804 + 13063784 13063824 41 TCCAGGCCTATTTCGCGTGTGAAAAAAATGAGAACTTGGCT TCCAGGCCTATTTCGCGTGTAAAAAAAATGAGAACTTGGCT Direct Loss 0.941070204668108 0 NA NA prediction 0.882140409336217 Functional Loss - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13063804 chr19:13063804 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_4965 0 0 1 0 1 RAD23A chr19:13063750 3'AG 13063750 Downstream 55bp 4849 chr15 40702870 40702870 1 + G T LUAD 40702870 + 40702850 40702890 41 GGCTACCTGGAGCATGTGCTGGTGATGGAGGAGATATCCCG GGCTACCTGGAGCATGTGCTTGTGATGGAGGAGATATCCCG Direct Loss 0.94104208040264 0 NA NA prediction 0.88208416080528 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40702870 chr15:40702870 synonymous SNV . 0 21 hm7G_associated_SNPs_4968 0 0 1 0 1 IVD chr15:40702827 3'AG 40702827 Downstream 44bp 4850 chr20 35506344 35506344 1 + G A rs141563351 35506344 + 35506324 35506364 41 TGTCTGGGGAGGAGGGTAACGAAGAGGAAGAGGAGGAGGAG TGTCTGGGGAGGAGGGTAACAAAGAGGAAGAGGAGGAGGAG Direct Loss 0.941040260143702 0 NA NA prediction 0.882080520287405 Functional Loss - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35506344 chr20:35506344 nonsynonymous SNV 0.553 0 21 hm7G_associated_SNPs_4969 0 0 0 0 1 TLDC2 chr20:35506302 3'AG 35506302 Downstream 43bp 4851 chr4 186353342 186353342 1 + G T UCEC 186353342 + 186353322 186353362 41 AAGCATTCCTCCCTAGTAATGGAGAGAAAAAGCCGTAAGTG AAGCATTCCTCCCTAGTAATTGAGAGAAAAAGCCGTAAGTG Direct Loss 0.941037494200843 0 NA NA prediction 0.882074988401687 Functional Loss - C4orf47 ENSG00000205129 CDS Human protein_coding chr4:186353342 chr4:186353342 stopgain 0.932 1 21 hm7G_associated_SNPs_4970 0 0 0 0 1 C4orf47 chr4:186353355 5'GT 186353355 Upstream 14bp 4852 chr12 130842030 130842030 1 + G A SKCM 130842030 + 130842010 130842050 41 TGTACTTTCATTCTAGGATTGAAGTGGATGACAGAACTGAA TGTACTTTCATTCTAGGATTAAAGTGGATGACAGAACTGAA Direct Loss 0.941028099698061 0 NA NA prediction 0.882056199396121 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130842030 chr12:130842030 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_4972 0 0 0 0 2 PIWIL1 chr12:130842026 3'AG 130842026 Downstream 5bp 4853 chr12 130842030 130842030 1 + G A SKCM 130842030 + 130842010 130842050 41 TGTACTTTCATTCTAGGATTGAAGTGGATGACAGAACTGAA TGTACTTTCATTCTAGGATTAAAGTGGATGACAGAACTGAA Direct Loss 0.941028099698061 0 NA NA prediction 0.882056199396121 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130842030 chr12:130842030 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_4972 0 0 0 0 2 PIWIL1 chr12:130842098 5'GT 130842098 Upstream 69bp 4854 chr1 109756719 109756719 1 + G T SARC 109756719 + 109756699 109756739 41 GACCCGGGACTAGTGGACCAGCTGGTGAAGGCAGACAGCGA GACCCGGGACTAGTGGACCATCTGGTGAAGGCAGACAGCGA Direct Loss 0.941015180706792 0 NA NA prediction 0.882030361413584 Functional Loss - SARS ENSG00000031698 CDS Human protein_coding chr1:109756719 chr1:109756719 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_4976 0 0 1 0 1 SARS chr1:109756750 5'GT 109756750 Upstream 32bp 4855 chr5 23524554 23524554 1 + G T BLCA 23524554 + 23524534 23524574 41 AGGCCAGGCTGTGAACTGCTGGTCTGGTATGGGGATGAATA AGGCCAGGCTGTGAACTGCTTGTCTGGTATGGGGATGAATA Direct Loss 0.941008224390372 0 NA NA prediction 0.882016448780743 Functional Loss - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524554 chr5:23524554 synonymous SNV . 0 21 hm7G_associated_SNPs_4977 0 0 0 0 1 PRDM9 chr5:23524636 5'GT 23524636 Upstream 83bp 4856 chr3 180324113 180324113 1 + G T CESC 180324113 + 180324093 180324133 41 AATGAATACAATAAAGCTTTGGAAATAGACAAACAAAACGT AATGAATACAATAAAGCTTTTGAAATAGACAAACAAAACGT Direct Loss 0.941005806578187 0 NA NA prediction 0.882011613156374 Functional Loss - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180324113 chr3:180324113 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_4978 0 0 1 0 1 TTC14 chr3:180324160 5'GT 180324160 Upstream 48bp 4857 chr2 88405866 88405866 1 + G T SARC 88405866 + 88405846 88405886 41 TGTGAAATTATGCCGGGAGTGCCTGGAGAAGCAGGAGCCAG TGTGAAATTATGCCGGGAGTTCCTGGAGAAGCAGGAGCCAG Direct Loss 0.941001346748506 0 NA NA prediction 0.882002693497011 Functional Loss - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88405866 chr2:88405866 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_4979 0 0 0 0 1 SMYD1 chr2:88405844 3'AG 88405844 Downstream 23bp 4858 chr1 15953223 15953223 1 + G T SARC 15953223 + 15953203 15953243 41 TCATTGGCTTCTTATGGCTTGAAAGATGGGGACGTTGTGAT TCATTGGCTTCTTATGGCTTTAAAGATGGGGACGTTGTGAT Direct Loss 0.940999799603714 0 NA NA prediction 0.881999599207429 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15953223 chr1:15953223 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_4980 0 0 1 0 2 DDI2 chr1:15953164 3'AG 15953164 Downstream 60bp 4859 chr1 15953223 15953223 1 + G T SARC 15953223 + 15953203 15953243 41 TCATTGGCTTCTTATGGCTTGAAAGATGGGGACGTTGTGAT TCATTGGCTTCTTATGGCTTTAAAGATGGGGACGTTGTGAT Direct Loss 0.940999799603714 0 NA NA prediction 0.881999599207429 Functional Loss - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15953223 chr1:15953223 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_4980 0 0 1 0 2 DDI2 chr1:15953293 5'GT 15953293 Upstream 71bp 4860 chr9 6328912 6328912 1 + G T LUAD 6328912 + 6328892 6328932 41 CACCATGGGCACTCTCATCTGCAGGAAGCTTGGAGGCGTGA CACCATGGGCACTCTCATCTTCAGGAAGCTTGGAGGCGTGA Direct Loss 0.940990340603234 0 NA NA prediction 0.881980681206467 Functional Loss - TPD52L3 ENSG00000170777 CDS Human protein_coding chr9:6328912 chr9:6328912 nonsynonymous SNV 0.794 2 21 hm7G_associated_SNPs_4983 0 0 0 0 1 TPD52L3 chr9:6328962 5'GT 6328962 Upstream 51bp 4861 chr10 112343189 112343189 1 + G A CESC 112343189 + 112343169 112343209 41 AAAACAAAAATTTCAGCTATGAAAGAAGAAAAAGAACAGCT AAAACAAAAATTTCAGCTATAAAAGAAGAAAAAGAACAGCT Direct Loss 0.940985971072121 0 NA NA prediction 0.881971942144241 Functional Loss - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112343189 chr10:112343189 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_4985 0 0 1 0 1 SMC3 chr10:112343142 3'AG 112343142 Downstream 48bp 4862 chr20 17968832 17968832 1 + G T THCA 17968832 + 17968812 17968852 41 CAAGCTCTGTGTGATTGATTGGAAGACATCAGAGAAACCAA CAAGCTCTGTGTGATTGATTTGAAGACATCAGAGAAACCAA Direct Loss 0.940971715107144 0 NA NA prediction 0.881943430214288 Functional Loss - MGME1 ENSG00000125871 CDS Human protein_coding chr20:17968832 chr20:17968832 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_4989 0 0 1 0 1 MGME1 chr20:17968809 3'AG 17968809 Downstream 24bp 4863 chr16 4920909 4920909 1 + G T LUAD 4920909 + 4920889 4920929 41 GTTCGGATGAGGAAGAAGATGAAGAAAAAGGGGGCAGGAGG GTTCGGATGAGGAAGAAGATTAAGAAAAAGGGGGCAGGAGG Direct Loss 0.940957135040306 0 NA NA prediction 0.881914270080612 Functional Loss - UBN1 ENSG00000118900 CDS Human protein_coding chr16:4920909 chr16:4920909 stopgain 0.999 1 21 hm7G_associated_SNPs_4990 0 0 1 0 2 UBN1 chr16:4920845 3'AG 4920845 Downstream 65bp 4864 chr16 4920909 4920909 1 + G T LUAD 4920909 + 4920889 4920929 41 GTTCGGATGAGGAAGAAGATGAAGAAAAAGGGGGCAGGAGG GTTCGGATGAGGAAGAAGATTAAGAAAAAGGGGGCAGGAGG Direct Loss 0.940957135040306 0 NA NA prediction 0.881914270080612 Functional Loss - UBN1 ENSG00000118900 CDS Human protein_coding chr16:4920909 chr16:4920909 stopgain 0.999 1 21 hm7G_associated_SNPs_4990 0 0 1 0 2 UBN1 chr16:4920973 5'GT 4920973 Upstream 65bp 4865 chr1 156770171 156770171 1 + G A CESC 156770171 + 156770151 156770191 41 TCTTCCTTGCCACAGGCCAAGGAGCGGGAGCTGGAACTGAA TCTTCCTTGCCACAGGCCAAAGAGCGGGAGCTGGAACTGAA Direct Loss 0.940948615937198 0 NA NA prediction 0.881897231874396 Functional Loss - PRCC ENSG00000143294 CDS Human protein_coding chr1:156770171 chr1:156770171 synonymous SNV . 0 21 hm7G_associated_SNPs_4992 0 0 1 0 1 PRCC chr1:156770166 3'AG 156770166 Downstream 6bp 4866 chr4 946235 946235 1 + G C HNSC 946235 + 946215 946255 41 GTGATCGCCATTGGGGTCGTGCAGGTAGGGGGCCTGGGGGG GTGATCGCCATTGGGGTCGTCCAGGTAGGGGGCCTGGGGGG Direct Loss 0.940948399328373 0 NA NA prediction 0.881896798656745 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:946235 chr4:946235 synonymous SNV . 0 21 hm7G_associated_SNPs_4993 0 0 1 0 2 TMEM175 chr4:946155 3'AG 946155 Downstream 81bp 4867 chr4 946235 946235 1 + G C HNSC 946235 + 946215 946255 41 GTGATCGCCATTGGGGTCGTGCAGGTAGGGGGCCTGGGGGG GTGATCGCCATTGGGGTCGTCCAGGTAGGGGGCCTGGGGGG Direct Loss 0.940948399328373 0 NA NA prediction 0.881896798656745 Functional Loss - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:946235 chr4:946235 synonymous SNV . 0 21 hm7G_associated_SNPs_4993 0 0 1 0 2 TMEM175 chr4:946238 5'GT 946238 Upstream 4bp 4868 chr5 34867132 34867132 1 + G A HNSC 34867132 + 34867112 34867152 41 GAAGCTGCTCAGATAGAGCAGCTGAGGAGGAACCACAACCA GAAGCTGCTCAGATAGAGCAACTGAGGAGGAACCACAACCA Direct Loss 0.940930805876753 0 NA NA prediction 0.881861611753505 Functional Loss - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34867132 chr5:34867132 synonymous SNV . 0 21 hm7G_associated_SNPs_4996 0 0 0 0 1 TTC23L chr5:34867174 5'GT 34867174 Upstream 43bp 4869 chr8 56702809 56702809 1 + G C rs141918059 56702809 + 56702789 56702829 41 CCAGTGGTACTGATGGAGATGAAAGTGAGGAAGACCCACCT CCAGTGGTACTGATGGAGATCAAAGTGAGGAAGACCCACCT Direct Loss 0.940899544782618 0 NA NA prediction 0.881799089565236 Functional Loss - TGS1 ENSG00000137574 CDS Human protein_coding chr8:56702809 chr8:56702809 nonsynonymous SNV 0.986 2 21 hm7G_associated_SNPs_4999 0 0 1 0 2 TGS1 chr8:56702741 3'AG 56702741 Downstream 69bp 4870 chr8 56702809 56702809 1 + G C rs141918059 56702809 + 56702789 56702829 41 CCAGTGGTACTGATGGAGATGAAAGTGAGGAAGACCCACCT CCAGTGGTACTGATGGAGATCAAAGTGAGGAAGACCCACCT Direct Loss 0.940899544782618 0 NA NA prediction 0.881799089565236 Functional Loss - TGS1 ENSG00000137574 CDS Human protein_coding chr8:56702809 chr8:56702809 nonsynonymous SNV 0.986 2 21 hm7G_associated_SNPs_4999 0 0 1 0 2 TGS1 chr8:56702858 5'GT 56702858 Upstream 50bp 4871 chr2 27281371 27281371 1 + G A CESC 27281371 + 27281351 27281391 41 CCTTACTAATCTACGGGCCTGGATGCTGAAACATGTACGCA CCTTACTAATCTACGGGCCTAGATGCTGAAACATGTACGCA Direct Loss 0.940895490156331 0 NA NA prediction 0.881790980312662 Functional Loss - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27281371 chr2:27281371 stopgain 1.000 1 21 hm7G_associated_SNPs_5000 0 0 1 0 1 AGBL5 chr2:27281470 5'GT 27281470 Upstream 100bp 4872 chr1 160385889 160385889 1 + G T LUAD 160385889 + 160385869 160385909 41 ACCGCTCTAAGAGTCGAGATGGGGGCCGAGGGGACAAGTCG ACCGCTCTAAGAGTCGAGATTGGGGCCGAGGGGACAAGTCG Direct Loss 0.940895155668166 0 NA NA prediction 0.881790311336332 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385889 chr1:160385889 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_5001 0 0 0 0 2 VANGL2 chr1:160385852 3'AG 160385852 Downstream 38bp 4873 chr1 160385889 160385889 1 + G T LUAD 160385889 + 160385869 160385909 41 ACCGCTCTAAGAGTCGAGATGGGGGCCGAGGGGACAAGTCG ACCGCTCTAAGAGTCGAGATTGGGGCCGAGGGGACAAGTCG Direct Loss 0.940895155668166 0 NA NA prediction 0.881790311336332 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385889 chr1:160385889 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_5001 0 0 0 0 2 VANGL2 chr1:160385972 5'GT 160385972 Upstream 84bp 4874 chr3 183823729 183823729 1 + G T rs187832026 183823729 + 183823709 183823749 41 CTGCTCATGATGAGTGACTTGCTCCCCACCAGTGGCACCCC CTGCTCATGATGAGTGACTTTCTCCCCACCAGTGGCACCCC Direct Loss 0.940877909785543 0 NA NA prediction 0.881755819571086 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823729 chr3:183823729 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_5005 0 0 0 0 1 HTR3E chr3:183823757 5'GT 183823757 Upstream 29bp 4875 chr4 155718025 155718025 1 + G A SKCM 155718025 + 155718005 155718045 41 ACAACATGGTTCAGGAAAATGGACAAAGGAAATTTGGCGGT ACAACATGGTTCAGGAAAATAGACAAAGGAAATTTGGCGGT Direct Loss 0.940877594021879 0 NA NA prediction 0.881755188043759 Functional Loss - RBM46 ENSG00000151962 CDS Human protein_coding chr4:155718025 chr4:155718025 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5006 0 0 0 0 1 RBM46 chr4:155718055 5'GT 155718055 Upstream 31bp 4876 chr20 45801439 45801439 1 + G A SKCM 45801439 + 45801419 45801459 41 TCTGGCGTGCACGGCGGCGTGGACTGGATGAGGAAGCTGGC TCTGGCGTGCACGGCGGCGTAGACTGGATGAGGAAGCTGGC Direct Loss 0.940877117666264 0 NA NA prediction 0.881754235332527 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801439 chr20:45801439 synonymous SNV . 0 21 hm7G_associated_SNPs_5007 0 0 1 0 2 EYA2 chr20:45801355 3'AG 45801355 Downstream 85bp 4877 chr20 45801439 45801439 1 + G A SKCM 45801439 + 45801419 45801459 41 TCTGGCGTGCACGGCGGCGTGGACTGGATGAGGAAGCTGGC TCTGGCGTGCACGGCGGCGTAGACTGGATGAGGAAGCTGGC Direct Loss 0.940877117666264 0 NA NA prediction 0.881754235332527 Functional Loss - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801439 chr20:45801439 synonymous SNV . 0 21 hm7G_associated_SNPs_5007 0 0 1 0 2 EYA2 chr20:45801515 5'GT 45801515 Upstream 77bp 4878 chr3 115395442 115395442 1 + G A SKCM 115395442 + 115395422 115395462 41 AGACTGGGGAGAGCAGCCAAGCTGAAGAGAACATAGGTGAG AGACTGGGGAGAGCAGCCAAACTGAAGAGAACATAGGTGAG Direct Loss 0.940874764417027 0 NA NA prediction 0.881749528834055 Functional Loss - GAP43 ENSG00000172020 CDS Human protein_coding chr3:115395442 chr3:115395442 nonsynonymous SNV 0.866 0 21 hm7G_associated_SNPs_5008 0 0 0 0 1 GAP43 chr3:115395457 5'GT 115395457 Upstream 16bp 4879 chr19 4651929 4651929 1 + G T SARC 4651929 + 4651909 4651949 41 GCTCTGCAGGCGCAGAAGAAGCTCCTGAGTAAGATGGCGTC GCTCTGCAGGCGCAGAAGAATCTCCTGAGTAAGATGGCGTC Direct Loss 0.940874616890374 0 NA NA prediction 0.881749233780748 Functional Loss - TNFAIP8L1 ENSG00000185361 CDS Human protein_coding chr19:4651929 chr19:4651929 nonsynonymous SNV 0.667 1 21 hm7G_associated_SNPs_5009 0 0 1 0 1 TNFAIP8L1 chr19:4651879 3'AG 4651879 Downstream 51bp 4880 chr17 64875094 64875094 1 + G A SKCM 64875094 + 64875074 64875114 41 ATTCTTGTCTCCACAGGTGAGGAGCGGGGGCGTTGCTTCAC ATTCTTGTCTCCACAGGTGAAGAGCGGGGGCGTTGCTTCAC Direct Loss 0.940869802801324 0 NA NA prediction 0.881739605602648 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64875094 chr17:64875094 synonymous SNV . 0 21 hm7G_associated_SNPs_5011 0 0 0 0 2 CACNG5 chr17:64875090 3'AG 64875090 Downstream 5bp 4881 chr17 64875094 64875094 1 + G A SKCM 64875094 + 64875074 64875114 41 ATTCTTGTCTCCACAGGTGAGGAGCGGGGGCGTTGCTTCAC ATTCTTGTCTCCACAGGTGAAGAGCGGGGGCGTTGCTTCAC Direct Loss 0.940869802801324 0 NA NA prediction 0.881739605602648 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64875094 chr17:64875094 synonymous SNV . 0 21 hm7G_associated_SNPs_5011 0 0 0 0 2 CACNG5 chr17:64875176 5'GT 64875176 Upstream 83bp 4882 chrX 152772381 152772381 1 + G T COAD 152772381 + 152772361 152772401 41 TCGCTACTCCAAGCTGTACAGGTGAGGCCAGCAGGGCACCG TCGCTACTCCAAGCTGTACATGTGAGGCCAGCAGGGCACCG Direct Loss 0.940850117480452 0 NA NA prediction 0.881700234960904 Functional Loss - BGN ENSG00000182492 CDS Human protein_coding chrX:152772381 chrX:152772381 nonsynonymous SNV 0.951 3 21 hm7G_associated_SNPs_5012 0 0 0 1 2 BGN chrX:152772288 3'AG 152772288 Downstream 94bp 4883 chrX 152772381 152772381 1 + G T COAD 152772381 + 152772361 152772401 41 TCGCTACTCCAAGCTGTACAGGTGAGGCCAGCAGGGCACCG TCGCTACTCCAAGCTGTACATGTGAGGCCAGCAGGGCACCG Direct Loss 0.940850117480452 0 NA NA prediction 0.881700234960904 Functional Loss - BGN ENSG00000182492 CDS Human protein_coding chrX:152772381 chrX:152772381 nonsynonymous SNV 0.951 3 21 hm7G_associated_SNPs_5012 0 0 0 1 2 BGN chrX:152772381 5'GT 152772381 Upstream 1bp 4884 chr19 42814479 42814479 1 + G A LUSC 42814479 + 42814459 42814499 41 CCTTCTGGATTAATAGCCCTGATCAAGTCCCAGAGCAGGAG CCTTCTGGATTAATAGCCCTAATCAAGTCCCAGAGCAGGAG Direct Loss 0.940843195396222 0 NA NA prediction 0.881686390792445 Functional Loss - PRR19 ENSG00000188368 CDS Human protein_coding chr19:42814479 chr19:42814479 nonsynonymous SNV 0.003 0 21 hm7G_associated_SNPs_5013 0 0 0 4 1 PRR19 chr19:42814423 3'AG 42814423 Downstream 57bp 4885 chr19 8491561 8491561 1 + G C OV 8491561 + 8491541 8491581 41 CTTGCTGTCCCCGTGTGGCTGCACCGGCACGCTGGGTGCCG CTTGCTGTCCCCGTGTGGCTCCACCGGCACGCTGGGTGCCG Direct Loss 0.940817030924899 0 NA NA prediction 0.881634061849797 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8491561 chr19:8491561 nonsynonymous SNV 0.597 3 21 hm7G_associated_SNPs_5015 0 0 1 0 1 MARCH2 chr19:8491493 3'AG 8491493 Downstream 69bp 4886 chr13 103279418 103279418 1 + G A CESC 103279418 + 103279398 103279438 41 GACACTTTCCAGAAGAACCTGAACGGAATGGGGTAGCTCCT GACACTTTCCAGAAGAACCTAAACGGAATGGGGTAGCTCCT Direct Loss 0.940805981634508 0 NA NA prediction 0.881611963269016 Functional Loss - TPP2 ENSG00000134900 CDS Human protein_coding chr13:103279418 chr13:103279418 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_5017 0 0 1 0 2 TPP2 chr13:103279362 3'AG 103279362 Downstream 57bp 4887 chr13 103279418 103279418 1 + G A CESC 103279418 + 103279398 103279438 41 GACACTTTCCAGAAGAACCTGAACGGAATGGGGTAGCTCCT GACACTTTCCAGAAGAACCTAAACGGAATGGGGTAGCTCCT Direct Loss 0.940805981634508 0 NA NA prediction 0.881611963269016 Functional Loss - TPP2 ENSG00000134900 CDS Human protein_coding chr13:103279418 chr13:103279418 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_5017 0 0 1 0 2 TPP2 chr13:103279516 5'GT 103279516 Upstream 99bp 4888 chr12 124163804 124163804 1 + G A GBM 124163804 + 124163784 124163824 41 GTCCTTGTAATTTAACAGCTGGAGCCTGTGATGTTCGCTGC GTCCTTGTAATTTAACAGCTAGAGCCTGTGATGTTCGCTGC Direct Loss 0.940797334347307 0 NA NA prediction 0.881594668694614 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124163804 chr12:124163804 nonsynonymous SNV 0.565 2 21 hm7G_associated_SNPs_5019 0 0 0 0 2 TCTN2 chr12:124163736 3'AG 124163736 Downstream 69bp 4889 chr12 124163804 124163804 1 + G A GBM 124163804 + 124163784 124163824 41 GTCCTTGTAATTTAACAGCTGGAGCCTGTGATGTTCGCTGC GTCCTTGTAATTTAACAGCTAGAGCCTGTGATGTTCGCTGC Direct Loss 0.940797334347307 0 NA NA prediction 0.881594668694614 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124163804 chr12:124163804 nonsynonymous SNV 0.565 2 21 hm7G_associated_SNPs_5019 0 0 0 0 2 TCTN2 chr12:124163836 5'GT 124163836 Upstream 33bp 4890 chr11 119027683 119027683 1 + G A LUAD 119027683 + 119027663 119027703 41 CTGAGAAGAAGAGCAGCCCTGAGAAGAACGAGGTCCCTGCC CTGAGAAGAAGAGCAGCCCTAAGAAGAACGAGGTCCCTGCC Direct Loss 0.940792817735758 0 NA NA prediction 0.881585635471515 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027683 chr11:119027683 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_5020 0 0 0 0 1 ABCG4 chr11:119027724 5'GT 119027724 Upstream 42bp 4891 chr1 192613499 192613499 1 + G A UCEC 192613499 + 192613479 192613519 41 TTGTTGGATTTGTAAGATGTGCAGAGATGAATCTAAGAGGC TTGTTGGATTTGTAAGATGTACAGAGATGAATCTAAGAGGC Direct Loss 0.940789741465904 0 NA NA prediction 0.881579482931807 Functional Loss - RGS13 ENSG00000127074 CDS Human protein_coding chr1:192613499 chr1:192613499 nonsynonymous SNV 0.987 1 21 hm7G_associated_SNPs_5022 0 0 0 0 2 RGS13 chr1:192613461 3'AG 192613461 Downstream 39bp 4892 chr1 192613499 192613499 1 + G A UCEC 192613499 + 192613479 192613519 41 TTGTTGGATTTGTAAGATGTGCAGAGATGAATCTAAGAGGC TTGTTGGATTTGTAAGATGTACAGAGATGAATCTAAGAGGC Direct Loss 0.940789741465904 0 NA NA prediction 0.881579482931807 Functional Loss - RGS13 ENSG00000127074 CDS Human protein_coding chr1:192613499 chr1:192613499 nonsynonymous SNV 0.987 1 21 hm7G_associated_SNPs_5022 0 0 0 0 2 RGS13 chr1:192613529 5'GT 192613529 Upstream 31bp 4893 chr15 41861081 41861081 1 + G T COAD 41861081 + 41861061 41861101 41 TTTTCCTGGCTGCAGGATGAGCTGACAGTGGAGGGGACCAG TTTTCCTGGCTGCAGGATGATCTGACAGTGGAGGGGACCAG Direct Loss 0.940779678334289 0 NA NA prediction 0.881559356668578 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41861081 chr15:41861081 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_5023 0 0 0 0 1 TYRO3 chr15:41861076 3'AG 41861076 Downstream 6bp 4894 chr6 52053926 52053926 1 + G A PRAD 52053926 + 52053906 52053946 41 GCCACTTGGGCTGCATCAACGCTGATGGGAACGTGGACTAC GCCACTTGGGCTGCATCAACACTGATGGGAACGTGGACTAC Direct Loss 0.94076029428277 0 NA NA prediction 0.881520588565541 Functional Loss - IL17A ENSG00000112115 CDS Human protein_coding chr6:52053926 chr6:52053926 nonsynonymous SNV 0.005 1 21 hm7G_associated_SNPs_5027 0 0 0 0 1 IL17A chr6:52053853 3'AG 52053853 Downstream 74bp 4895 chr12 57974825 57974825 1 + G A HNSC 57974825 + 57974805 57974845 41 GCTGAGAGAGTTAAGGCCCTGGAGGGTGCACTGAAGGAGGC GCTGAGAGAGTTAAGGCCCTAGAGGGTGCACTGAAGGAGGC Direct Loss 0.940757933588054 0 NA NA prediction 0.881515867176109 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57974825 chr12:57974825 synonymous SNV . 0 21 hm7G_associated_SNPs_5028 0 0 1 0 1 KIF5A chr12:57974739 3'AG 57974739 Downstream 87bp 4896 chr14 21500121 21500121 1 + G A rs9624 21500121 + 21500101 21500141 41 CACCGGCACCCACAAGGAGCGCTTTGATGAGAGTGGCAAGG CACCGGCACCCACAAGGAGCACTTTGATGAGAGTGGCAAGG Direct Loss 0.940754880971328 0 NA NA prediction 0.881509761942656 Functional Loss - TPPP2 ENSG00000179636 CDS Human protein_coding chr14:21500121 chr14:21500121 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5031 0 0 0 0 1 TPPP2 chr14:21500051 3'AG 21500051 Downstream 71bp 4897 chrX 77380396 77380396 1 + G A KIRC 77380396 + 77380376 77380416 41 GGACTGTGGTCCTGAAAGCAGCAAGAAGTATGCTGAGGCTG GGACTGTGGTCCTGAAAGCAACAAGAAGTATGCTGAGGCTG Direct Loss 0.940749964683448 0 NA NA prediction 0.881499929366897 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77380396 chrX:77380396 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5032 0 0 1 0 1 PGK1 chrX:77380371 3'AG 77380371 Downstream 26bp 4898 chr16 20860751 20860751 1 + G C BLCA 20860751 + 20860731 20860771 41 TCACTCTCTGGTCTAGGACTGATGGGAATAAAAGAGGAAGA TCACTCTCTGGTCTAGGACTCATGGGAATAAAAGAGGAAGA Direct Loss 0.940747029933916 0 NA NA prediction 0.881494059867832 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20860751 chr16:20860751 synonymous SNV . 0 21 hm7G_associated_SNPs_5034 0 0 1 0 1 REXO5 chr16:20860721 3'AG 20860721 Downstream 31bp 4899 chr17 47246168 47246168 1 + G A UCEC 47246168 + 47246148 47246188 41 GATGGCTTCCCCAGCTGCGTGGTGACCAGTGGCGTGGTCAA GATGGCTTCCCCAGCTGCGTAGTGACCAGTGGCGTGGTCAA Direct Loss 0.940745803375758 0 NA NA prediction 0.881491606751515 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47246168 chr17:47246168 synonymous SNV . 0 21 hm7G_associated_SNPs_5035 0 0 0 0 1 B4GALNT2 chr17:47246262 5'GT 47246262 Upstream 95bp 4900 chr9 114691876 114691876 1 + G A UCEC 114691876 + 114691856 114691896 41 CTTGTTTAATGAGAAAAGATGTGTTGGATCAAGCAGGAGGA CTTGTTTAATGAGAAAAGATATGTTGGATCAAGCAGGAGGA Direct Loss 0.940737044356398 0 NA NA prediction 0.881474088712797 Functional Loss - UGCG ENSG00000148154 CDS Human protein_coding chr9:114691876 chr9:114691876 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_5037 0 0 1 0 2 UGCG chr9:114691780 3'AG 114691780 Downstream 97bp 4901 chr9 114691876 114691876 1 + G A UCEC 114691876 + 114691856 114691896 41 CTTGTTTAATGAGAAAAGATGTGTTGGATCAAGCAGGAGGA CTTGTTTAATGAGAAAAGATATGTTGGATCAAGCAGGAGGA Direct Loss 0.940737044356398 0 NA NA prediction 0.881474088712797 Functional Loss - UGCG ENSG00000148154 CDS Human protein_coding chr9:114691876 chr9:114691876 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_5037 0 0 1 0 2 UGCG chr9:114691958 5'GT 114691958 Upstream 83bp 4902 chr5 55110814 55110814 1 + G A SKCM 55110814 + 55110794 55110834 41 TTGTTGCTACTTCAGTAGCTGCCAGAGGGCTGGATATTGAA TTGTTGCTACTTCAGTAGCTACCAGAGGGCTGGATATTGAA Direct Loss 0.940728734299448 0 NA NA prediction 0.881457468598896 Functional Loss - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55110814 chr5:55110814 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5038 0 0 0 0 1 DDX4 chr5:55110729 3'AG 55110729 Downstream 86bp 4903 chr18 29790499 29790499 1 + G A SKCM 29790499 + 29790479 29790519 41 TGCATTTCGATAGCAGCTCTGTAAATGTGGGGGCCACAGCA TGCATTTCGATAGCAGCTCTATAAATGTGGGGGCCACAGCA Direct Loss 0.940715608288244 0 NA NA prediction 0.881431216576489 Functional Loss - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29790499 chr18:29790499 nonsynonymous SNV 0.022 2 21 hm7G_associated_SNPs_5039 0 0 1 0 1 MEP1B chr18:29790464 3'AG 29790464 Downstream 36bp 4904 chr2 61118847 61118847 1 + G T UCEC 61118847 + 61118827 61118867 41 ACCCGTATATAGAGATAATTGAACAACCCAGGCAGAGGGGA ACCCGTATATAGAGATAATTTAACAACCCAGGCAGAGGGGA Direct Loss 0.940697666552666 0 NA NA prediction 0.881395333105332 Functional Loss - REL ENSG00000162924 CDS Human protein_coding chr2:61118847 chr2:61118847 stopgain 0.999 1 21 hm7G_associated_SNPs_5040 0 0 1 0 1 REL chr2:61118818 3'AG 61118818 Downstream 30bp 4905 chr1 162536116 162536116 1 + G T SARC 162536116 + 162536096 162536136 41 GCTACAAGGGATCAAGATCAGCTCCAGGCCTGGGAAAGTGA GCTACAAGGGATCAAGATCATCTCCAGGCCTGGGAAAGTGA Direct Loss 0.940696701683939 0 NA NA prediction 0.881393403367879 Functional Loss - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162536116 chr1:162536116 nonsynonymous SNV 0.332 0 21 hm7G_associated_SNPs_5041 0 0 1 0 1 UAP1 chr1:162536138 5'GT 162536138 Upstream 23bp 4906 chr10 104160088 104160088 1 + G T STAD 104160088 + 104160068 104160108 41 ACGAGTGTGGTGAGCTTTCTGCTGCGGGTAGGTGCAGACCC ACGAGTGTGGTGAGCTTTCTTCTGCGGGTAGGTGCAGACCC Direct Loss 0.940695472232046 0 NA NA prediction 0.881390944464093 Functional Loss - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160088 chr10:104160088 synonymous SNV . 0 21 hm7G_associated_SNPs_5042 0 0 1 0 1 NFKB2 chr10:104160035 3'AG 104160035 Downstream 54bp 4907 chrX 119500416 119500416 1 + G A SKCM 119500416 + 119500396 119500436 41 CGAACCAGAACTACTTAGCAGATGAAGAGGAGGAAGCAGAA CGAACCAGAACTACTTAGCAAATGAAGAGGAGGAAGCAGAA Direct Loss 0.94067392558356 0 NA NA prediction 0.88134785116712 Functional Loss - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119500416 chrX:119500416 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5043 0 0 0 0 1 ATP1B4 chrX:119500380 3'AG 119500380 Downstream 37bp 4908 chr11 1862422 1862422 1 + G A rs147658888 1862422 + 1862402 1862442 41 AACCTGAAGCAGGTCAAGAAGGAGGACACAGAGAAGGTGCG AACCTGAAGCAGGTCAAGAAAGAGGACACAGAGAAGGTGCG Direct Loss 0.940656916270533 0 NA NA prediction 0.881313832541067 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862422 chr11:1862422 synonymous SNV . 0 21 hm7G_associated_SNPs_5045 0 0 0 0 1 TNNI2 chr11:1862437 5'GT 1862437 Upstream 16bp 4909 chr11 93837751 93837751 1 + G A UCEC 93837751 + 93837731 93837771 41 GCCGAAAAGGAGTCTTGAATGAAAAGGGAAGAAGAAGTGAC GCCGAAAAGGAGTCTTGAATAAAAAGGGAAGAAGAAGTGAC Direct Loss 0.940650722737446 0 NA NA prediction 0.881301445474892 Functional Loss - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93837751 chr11:93837751 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_5046 0 0 0 0 1 HEPHL1 chr11:93837694 3'AG 93837694 Downstream 58bp 4910 chr20 3729962 3729962 1 + G A GBM 3729962 + 3729942 3729982 41 AGCTGTGGGCAGAGATGCAAGCAGGTAGGGGGAAAGGGGGA AGCTGTGGGCAGAGATGCAAACAGGTAGGGGGAAAGGGGGA Direct Loss 0.94063940597799 0 NA NA prediction 0.881278811955981 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3729962 chr20:3729962 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_5048 0 0 0 0 2 HSPA12B chr20:3729879 3'AG 3729879 Downstream 84bp 4911 chr20 3729962 3729962 1 + G A GBM 3729962 + 3729942 3729982 41 AGCTGTGGGCAGAGATGCAAGCAGGTAGGGGGAAAGGGGGA AGCTGTGGGCAGAGATGCAAACAGGTAGGGGGAAAGGGGGA Direct Loss 0.94063940597799 0 NA NA prediction 0.881278811955981 Functional Loss - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3729962 chr20:3729962 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_5048 0 0 0 0 2 HSPA12B chr20:3729965 5'GT 3729965 Upstream 4bp 4912 chr1 205494317 205494317 1 + G A SKCM 205494317 + 205494297 205494337 41 TACGTGAAACTGGACAAACTGGGAGAGGTAAGACGCTGGGT TACGTGAAACTGGACAAACTAGGAGAGGTAAGACGCTGGGT Direct Loss 0.940633508367922 0 NA NA prediction 0.881267016735845 Functional Loss - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205494317 chr1:205494317 synonymous SNV . 0 21 hm7G_associated_SNPs_5050 0 0 1 0 2 CDK18 chr1:205494267 3'AG 205494267 Downstream 51bp 4913 chr1 205494317 205494317 1 + G A SKCM 205494317 + 205494297 205494337 41 TACGTGAAACTGGACAAACTGGGAGAGGTAAGACGCTGGGT TACGTGAAACTGGACAAACTAGGAGAGGTAAGACGCTGGGT Direct Loss 0.940633508367922 0 NA NA prediction 0.881267016735845 Functional Loss - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205494317 chr1:205494317 synonymous SNV . 0 21 hm7G_associated_SNPs_5050 0 0 1 0 2 CDK18 chr1:205494323 5'GT 205494323 Upstream 7bp 4914 chr1 12010430 12010430 1 + G A OV 12010430 + 12010410 12010450 41 ACAGCTATGACGTGCTGTTTGCATCGGGGCCCCGGGAGCTC ACAGCTATGACGTGCTGTTTACATCGGGGCCCCGGGAGCTC Direct Loss 0.94062651900966 0 NA NA prediction 0.88125303801932 Functional Loss - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12010430 chr1:12010430 nonsynonymous SNV 0.813 2 21 hm7G_associated_SNPs_5051 0 0 1 0 1 PLOD1 chr1:12010414 3'AG 12010414 Downstream 17bp 4915 chr14 23239049 23239049 1 + G C LUSC 23239049 + 23239029 23239069 41 CCTCTCATCGTGACGGGCCAGCGAGAGGCAGCCAGGATCCA CCTCTCATCGTGACGGGCCACCGAGAGGCAGCCAGGATCCA Direct Loss 0.940626419562703 0 NA NA prediction 0.881252839125405 Functional Loss - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239049 chr14:23239049 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5052 0 0 1 0 1 OXA1L chr14:23239000 3'AG 23239000 Downstream 50bp 4916 chr7 150698385 150698385 1 + G C BLCA 150698385 + 150698365 150698405 41 TCATGAAGCACCTGGAGAATGAGCAGAAGGCCAGGGGGGGC TCATGAAGCACCTGGAGAATCAGCAGAAGGCCAGGGGGGGC Direct Loss 0.940626098071264 0 NA NA prediction 0.881252196142527 Functional Loss - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150698385 chr7:150698385 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_5053 0 0 0 0 1 NOS3 chr7:150698319 3'AG 150698319 Downstream 67bp 4917 chr15 41863264 41863264 1 + G A UCEC 41863264 + 41863244 41863284 41 GGTTCAGTGCGGGAGGCCCAGCTGAAGCAAGAGGATGGCTC GGTTCAGTGCGGGAGGCCCAACTGAAGCAAGAGGATGGCTC Direct Loss 0.94062214686141 0 NA NA prediction 0.881244293722819 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41863264 chr15:41863264 synonymous SNV . 0 21 hm7G_associated_SNPs_5054 0 0 1 0 2 TYRO3 chr15:41863236 3'AG 41863236 Downstream 29bp 4918 chr15 41863264 41863264 1 + G A UCEC 41863264 + 41863244 41863284 41 GGTTCAGTGCGGGAGGCCCAGCTGAAGCAAGAGGATGGCTC GGTTCAGTGCGGGAGGCCCAACTGAAGCAAGAGGATGGCTC Direct Loss 0.94062214686141 0 NA NA prediction 0.881244293722819 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41863264 chr15:41863264 synonymous SNV . 0 21 hm7G_associated_SNPs_5054 0 0 1 0 2 TYRO3 chr15:41863316 5'GT 41863316 Upstream 53bp 4919 chr19 52856994 52856994 1 + G C HNSC 52856994 + 52856974 52857014 41 CAGGAGGAGTGGAAATCCCTGGACCCTGGACAGAGGGCTTT CAGGAGGAGTGGAAATCCCTCGACCCTGGACAGAGGGCTTT Direct Loss 0.940620520315017 0 NA NA prediction 0.881241040630033 Functional Loss - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856994 chr19:52856994 synonymous SNV . 0 21 hm7G_associated_SNPs_5055 0 0 0 0 2 ZNF610 chr19:52856935 3'AG 52856935 Downstream 60bp 4920 chr19 52856994 52856994 1 + G C HNSC 52856994 + 52856974 52857014 41 CAGGAGGAGTGGAAATCCCTGGACCCTGGACAGAGGGCTTT CAGGAGGAGTGGAAATCCCTCGACCCTGGACAGAGGGCTTT Direct Loss 0.940620520315017 0 NA NA prediction 0.881241040630033 Functional Loss - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856994 chr19:52856994 synonymous SNV . 0 21 hm7G_associated_SNPs_5055 0 0 0 0 2 ZNF610 chr19:52857061 5'GT 52857061 Upstream 68bp 4921 chr15 45706819 45706819 1 + G A CESC 45706819 + 45706799 45706839 41 GAATTTGTTAGAATGGGCCTGACACAACCAAAGGGAGTTCT GAATTTGTTAGAATGGGCCTAACACAACCAAAGGGAGTTCT Direct Loss 0.940611254494386 0 NA NA prediction 0.881222508988772 Functional Loss - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45706819 chr15:45706819 synonymous SNV . 0 21 hm7G_associated_SNPs_5057 0 0 1 4 1 SPATA5L1 chr15:45706769 3'AG 45706769 Downstream 51bp 4922 chr12 86276048 86276048 1 + G T UCEC 86276048 + 86276028 86276068 41 GGAAATGACAAAAATGGAAAGGAAGAAGTCATAAAGAGAAA GGAAATGACAAAAATGGAAATGAAGAAGTCATAAAGAGAAA Direct Loss 0.940587788277158 0 NA NA prediction 0.881175576554317 Functional Loss - NTS ENSG00000133636 CDS Human protein_coding chr12:86276048 chr12:86276048 nonsynonymous SNV 0.939 1 21 hm7G_associated_SNPs_5061 0 0 0 0 1 NTS chr12:86276001 3'AG 86276001 Downstream 48bp 4923 chr3 36485125 36485125 1 + G A SKCM 36485125 + 36485105 36485145 41 TGTGATGTCTGCAACCACATGATAGTGGGTAAGGCCTCCCA TGTGATGTCTGCAACCACATAATAGTGGGTAAGGCCTCCCA Direct Loss 0.940582378809377 0 NA NA prediction 0.881164757618753 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36485125 chr3:36485125 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5062 0 0 0 0 1 STAC chr3:36485132 5'GT 36485132 Upstream 8bp 4924 chr2 159651908 159651908 1 + G C SARC 159651908 + 159651888 159651928 41 GCAAATGAAGTGCAAGACCTGCTCTCCCCTCGGAAAGGGGG GCAAATGAAGTGCAAGACCTCCTCTCCCCTCGGAAAGGGGG Direct Loss 0.940579728070997 0 NA NA prediction 0.881159456141993 Functional Loss - DAPL1 ENSG00000163331 CDS Human protein_coding chr2:159651908 chr2:159651908 synonymous SNV . 0 21 hm7G_associated_SNPs_5063 0 0 0 0 1 DAPL1 chr2:159651942 5'GT 159651942 Upstream 35bp 4925 chr12 132335517 132335517 1 + G T LUAD 132335517 + 132335497 132335537 41 AGTACTGGAAAGTGCTGGATGGCGAGCTGGAGGTGGCACCC AGTACTGGAAAGTGCTGGATTGCGAGCTGGAGGTGGCACCC Direct Loss 0.940571313700109 0 NA NA prediction 0.881142627400219 Functional Loss - MMP17 ENSG00000198598 CDS Human protein_coding chr12:132335517 chr12:132335517 nonsynonymous SNV 0.987 4 21 hm7G_associated_SNPs_5064 0 0 0 0 1 MMP17 chr12:132335470 3'AG 132335470 Downstream 48bp 4926 chr11 85345230 85345230 1 + G A LUSC 85345230 + 85345210 85345250 41 GCTGCTTCAAGGTTAAACATGATGCTTTGAAGACATATGCA GCTGCTTCAAGGTTAAACATAATGCTTTGAAGACATATGCA Direct Loss 0.94056520942258 0 NA NA prediction 0.88113041884516 Functional Loss - TMEM126B ENSG00000171204 CDS Human protein_coding chr11:85345230 chr11:85345230 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_5065 0 0 1 0 1 TMEM126B chr11:85345323 5'GT 85345323 Upstream 94bp 4927 chrX 2947312 2947312 1 + G A rs61978611 2947312 + 2947292 2947332 41 ATTGACGGCCAGAACCTAATGCCCCTGCTGGAAGGAAGGGC ATTGACGGCCAGAACCTAATACCCCTGCTGGAAGGAAGGGC Direct Loss 0.940560546168816 0 NA NA prediction 0.881121092337631 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2947312 chrX:2947312 nonsynonymous SNV 0.978 1 21 hm7G_associated_SNPs_5066 0 0 0 0 1 ARSH chrX:2947409 5'GT 2947409 Upstream 98bp 4928 chr10 115661456 115661456 1 + G A STAD 115661456 + 115661436 115661476 41 AAGGAACCTGCCTTAGGTTTGCTGGAAGTGGAAATGAAGAG AAGGAACCTGCCTTAGGTTTACTGGAAGTGGAAATGAAGAG Direct Loss 0.94055869219753 0 NA NA prediction 0.88111738439506 Functional Loss - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115661456 chr10:115661456 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5067 0 0 1 1 1 NHLRC2 chr10:115661425 3'AG 115661425 Downstream 32bp 4929 chr12 133195507 133195507 1 + G A HNSC 133195507 + 133195487 133195527 41 GAGACGCCCAAGGTGATCGTGGTGAGGAACCGGCGCCTGGG GAGACGCCCAAGGTGATCGTAGTGAGGAACCGGCGCCTGGG Direct Loss 0.94054384905964 0 NA NA prediction 0.88108769811928 Functional Loss - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133195507 chr12:133195507 synonymous SNV . 0 21 hm7G_associated_SNPs_5068 0 0 0 0 2 P2RX2 chr12:133195507 5'GT 133195507 Upstream 1bp 4930 chr12 133195507 133195507 1 + G A HNSC 133195507 + 133195487 133195527 41 GAGACGCCCAAGGTGATCGTGGTGAGGAACCGGCGCCTGGG GAGACGCCCAAGGTGATCGTAGTGAGGAACCGGCGCCTGGG Direct Loss 0.94054384905964 0 NA NA prediction 0.88108769811928 Functional Loss - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133195507 chr12:133195507 synonymous SNV . 0 21 hm7G_associated_SNPs_5068 0 0 0 0 2 P2RX2 chr12:133195575 5'GT 133195575 Upstream 69bp 4931 chr15 72953615 72953615 1 + G A STAD 72953615 + 72953595 72953635 41 CACCATCCAGTCCTCGAGCTGCAGAGAAGCGGTCCTCCACC CACCATCCAGTCCTCGAGCTACAGAGAAGCGGTCCTCCACC Direct Loss 0.940536311134203 0 NA NA prediction 0.881072622268405 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72953615 chr15:72953615 nonsynonymous SNV 0.002 0 21 hm7G_associated_SNPs_5069 0 0 0 0 2 GOLGA6B chr15:72953605 3'AG 72953605 Downstream 11bp 4932 chr15 72953615 72953615 1 + G A STAD 72953615 + 72953595 72953635 41 CACCATCCAGTCCTCGAGCTGCAGAGAAGCGGTCCTCCACC CACCATCCAGTCCTCGAGCTACAGAGAAGCGGTCCTCCACC Direct Loss 0.940536311134203 0 NA NA prediction 0.881072622268405 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72953615 chr15:72953615 nonsynonymous SNV 0.002 0 21 hm7G_associated_SNPs_5069 0 0 0 0 2 GOLGA6B chr15:72953691 5'GT 72953691 Upstream 77bp 4933 chr19 14150715 14150715 1 + G A SKCM 14150715 + 14150695 14150735 41 AAGATGTCAGGAGGCGGCCTGGACCCTGGTGAGTGCTGGGG AAGATGTCAGGAGGCGGCCTAGACCCTGGTGAGTGCTGGGG Direct Loss 0.94053615088558 0 NA NA prediction 0.881072301771161 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150715 chr19:14150715 stopgain 0.817 1 21 hm7G_associated_SNPs_5070 0 0 0 0 1 IL27RA chr19:14150722 5'GT 14150722 Upstream 8bp 4934 chr3 32181797 32181797 1 + G A COAD 32181797 + 32181777 32181817 41 ATGGGTATTGACATCAGTGTGCTGATGGGAGCCAACATTGC ATGGGTATTGACATCAGTGTACTGATGGGAGCCAACATTGC Direct Loss 0.940531021881521 0 NA NA prediction 0.881062043763042 Functional Loss - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32181797 chr3:32181797 synonymous SNV . 0 21 hm7G_associated_SNPs_5071 0 0 0 0 2 GPD1L chr3:32181720 3'AG 32181720 Downstream 78bp 4935 chr3 32181797 32181797 1 + G A COAD 32181797 + 32181777 32181817 41 ATGGGTATTGACATCAGTGTGCTGATGGGAGCCAACATTGC ATGGGTATTGACATCAGTGTACTGATGGGAGCCAACATTGC Direct Loss 0.940531021881521 0 NA NA prediction 0.881062043763042 Functional Loss - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32181797 chr3:32181797 synonymous SNV . 0 21 hm7G_associated_SNPs_5071 0 0 0 0 2 GPD1L chr3:32181858 5'GT 32181858 Upstream 62bp 4936 chr20 44641162 44641162 1 + G T LUSC 44641162 + 44641142 44641182 41 GCTCATGTACCCTATGTACCGCTTCACTGAGGGGCCCCCCT GCTCATGTACCCTATGTACCTCTTCACTGAGGGGCCCCCCT Direct Loss 0.940527978232801 0 NA NA prediction 0.881055956465602 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641162 chr20:44641162 nonsynonymous SNV 0.792 0 21 hm7G_associated_SNPs_5072 0 0 0 0 2 MMP9 chr20:44641066 3'AG 44641066 Downstream 97bp 4937 chr20 44641162 44641162 1 + G T LUSC 44641162 + 44641142 44641182 41 GCTCATGTACCCTATGTACCGCTTCACTGAGGGGCCCCCCT GCTCATGTACCCTATGTACCTCTTCACTGAGGGGCCCCCCT Direct Loss 0.940527978232801 0 NA NA prediction 0.881055956465602 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641162 chr20:44641162 nonsynonymous SNV 0.792 0 21 hm7G_associated_SNPs_5072 0 0 0 0 2 MMP9 chr20:44641221 5'GT 44641221 Upstream 60bp 4938 chr5 52781804 52781804 1 + G A SKCM 52781804 + 52781784 52781824 41 TTTCGGAAGACACCGAGGAAGAGGAGGAAGATGAAGACCAG TTTCGGAAGACACCGAGGAAAAGGAGGAAGATGAAGACCAG Direct Loss 0.940526401161809 0 NA NA prediction 0.881052802323617 Functional Loss - FST ENSG00000134363 CDS Human protein_coding chr5:52781804 chr5:52781804 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5073 0 0 1 0 1 FST chr5:52781781 3'AG 52781781 Downstream 24bp 4939 chrX 48382367 48382367 1 + G T BRCA 48382367 + 48382347 48382387 41 GACTGTCCCTGTGCTGGTTTGCAGTGTGTGGGTTCATTCAC GACTGTCCCTGTGCTGGTTTTCAGTGTGTGGGTTCATTCAC Direct Loss 0.940522374400634 0 NA NA prediction 0.881044748801268 Functional Loss - EBP ENSG00000147155 CDS Human protein_coding chrX:48382367 chrX:48382367 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5075 0 0 1 0 1 EBP chrX:48382460 5'GT 48382460 Upstream 94bp 4940 chr19 48257810 48257810 1 + G A UCEC 48257810 + 48257790 48257830 41 CTCTCAGCGGCCCACGAGGTGGAGTTGCAGCGGCAGAAGGA CTCTCAGCGGCCCACGAGGTAGAGTTGCAGCGGCAGAAGGA Direct Loss 0.940513369679534 0 NA NA prediction 0.881026739359067 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48257810 chr19:48257810 synonymous SNV . 0 21 hm7G_associated_SNPs_5077 0 0 1 0 2 NOP53 chr19:48257784 3'AG 48257784 Downstream 27bp 4941 chr19 48257810 48257810 1 + G A UCEC 48257810 + 48257790 48257830 41 CTCTCAGCGGCCCACGAGGTGGAGTTGCAGCGGCAGAAGGA CTCTCAGCGGCCCACGAGGTAGAGTTGCAGCGGCAGAAGGA Direct Loss 0.940513369679534 0 NA NA prediction 0.881026739359067 Functional Loss - NOP53 ENSG00000105373 CDS Human protein_coding chr19:48257810 chr19:48257810 synonymous SNV . 0 21 hm7G_associated_SNPs_5077 0 0 1 0 2 NOP53 chr19:48257888 5'GT 48257888 Upstream 79bp 4942 chr1 112958850 112958850 1 + G A COAD 112958850 + 112958830 112958870 41 TTTAGTATTCTTGAAGGAGAGCTTGAAGCAAGGGACCTTGT TTTAGTATTCTTGAAGGAGAACTTGAAGCAAGGGACCTTGT Direct Loss 0.940501050715013 0 NA NA prediction 0.881002101430025 Functional Loss - CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112958850 chr1:112958850 synonymous SNV . 0 21 hm7G_associated_SNPs_5078 0 0 1 0 2 CTTNBP2NL chr1:112958779 3'AG 112958779 Downstream 72bp 4943 chr1 112958850 112958850 1 + G A COAD 112958850 + 112958830 112958870 41 TTTAGTATTCTTGAAGGAGAGCTTGAAGCAAGGGACCTTGT TTTAGTATTCTTGAAGGAGAACTTGAAGCAAGGGACCTTGT Direct Loss 0.940501050715013 0 NA NA prediction 0.881002101430025 Functional Loss - CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112958850 chr1:112958850 synonymous SNV . 0 21 hm7G_associated_SNPs_5078 0 0 1 0 2 CTTNBP2NL chr1:112958886 5'GT 112958886 Upstream 37bp 4944 chr14 74711961 74711961 1 + G A SKCM 74711961 + 74711941 74711981 41 GCCCGGGAGATGCTGGCCATGAAAACGGAGCTGCCGGAAGA GCCCGGGAGATGCTGGCCATAAAAACGGAGCTGCCGGAAGA Direct Loss 0.940495609831316 0 NA NA prediction 0.880991219662631 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74711961 chr14:74711961 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_5080 0 0 0 0 2 VSX2 chr14:74711868 3'AG 74711868 Downstream 94bp 4945 chr14 74711961 74711961 1 + G A SKCM 74711961 + 74711941 74711981 41 GCCCGGGAGATGCTGGCCATGAAAACGGAGCTGCCGGAAGA GCCCGGGAGATGCTGGCCATAAAAACGGAGCTGCCGGAAGA Direct Loss 0.940495609831316 0 NA NA prediction 0.880991219662631 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74711961 chr14:74711961 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_5080 0 0 0 0 2 VSX2 chr14:74711991 5'GT 74711991 Upstream 31bp 4946 chr1 160319357 160319357 1 + G A LUSC 160319357 + 160319337 160319377 41 AGGGATTTAATGGAGAAGCTGAAAGGGAGAACCAGCCGAAT AGGGATTTAATGGAGAAGCTAAAAGGGAGAACCAGCCGAAT Direct Loss 0.94049354639184 0 NA NA prediction 0.88098709278368 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160319357 chr1:160319357 synonymous SNV . 0 21 hm7G_associated_SNPs_5081 0 0 1 2 1 NCSTN chr1:160319339 3'AG 160319339 Downstream 19bp 4947 chr22 35783130 35783130 1 + G A LUSC 35783130 + 35783110 35783150 41 CCCGCAGTCAGGCAGAGGGTGATAGAAGAGGCCAAGACTGC CCCGCAGTCAGGCAGAGGGTAATAGAAGAGGCCAAGACTGC Direct Loss 0.940491466045835 0 NA NA prediction 0.880982932091669 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783130 chr22:35783130 synonymous SNV . 0 21 hm7G_associated_SNPs_5082 0 0 1 0 1 HMOX1 chr22:35783169 5'GT 35783169 Upstream 40bp 4948 chr17 48823148 48823148 1 + G C LUSC 48823148 + 48823128 48823168 41 AAAAAAGGAGAAGCAAGAAAGAGAAGAAAGAGAAAAAGAAC AAAAAAGGAGAAGCAAGAAACAGAAGAAAGAGAAAAAGAAC Direct Loss 0.940491213101669 0 NA NA prediction 0.880982426203339 Functional Loss - LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48823148 chr17:48823148 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5083 0 0 1 0 1 LUC7L3 chr17:48823081 3'AG 48823081 Downstream 68bp 4949 chrX 13636106 13636106 1 + G T COAD 13636106 + 13636086 13636126 41 TGAAAGAGGGGCTTGAGGATGAGAAAAGAGAAGAGAAAGCC TGAAAGAGGGGCTTGAGGATTAGAAAAGAGAAGAGAAAGCC Direct Loss 0.940487252557277 0 NA NA prediction 0.880974505114554 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13636106 chrX:13636106 stopgain 0.011 0 21 hm7G_associated_SNPs_5084 0 0 0 0 1 EGFL6 chrX:13636172 5'GT 13636172 Upstream 67bp 4950 chr6 39046148 39046148 1 + G A SKCM 39046148 + 39046128 39046168 41 GCATTGTCAAGTACCTCTATGAGGACGAGGGGTGAGTGTCC GCATTGTCAAGTACCTCTATAAGGACGAGGGGTGAGTGTCC Direct Loss 0.940483528689147 0 NA NA prediction 0.880967057378295 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39046148 chr6:39046148 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5085 0 0 0 3 2 GLP1R chr6:39046098 3'AG 39046098 Downstream 51bp 4951 chr6 39046148 39046148 1 + G A SKCM 39046148 + 39046128 39046168 41 GCATTGTCAAGTACCTCTATGAGGACGAGGGGTGAGTGTCC GCATTGTCAAGTACCTCTATAAGGACGAGGGGTGAGTGTCC Direct Loss 0.940483528689147 0 NA NA prediction 0.880967057378295 Functional Loss - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39046148 chr6:39046148 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5085 0 0 0 3 2 GLP1R chr6:39046158 5'GT 39046158 Upstream 11bp 4952 chr6 151936637 151936637 1 + G A LIHC 151936637 + 151936617 151936657 41 AACAAATCCAGAGACCAACTGGAGAAGATGAAGGAGAAAGC AACAAATCCAGAGACCAACTAGAGAAGATGAAGGAGAAAGC Direct Loss 0.940475466179204 0 NA NA prediction 0.880950932358407 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151936637 chr6:151936637 synonymous SNV . 0 21 hm7G_associated_SNPs_5086 0 0 0 0 1 CCDC170 chr6:151936578 3'AG 151936578 Downstream 60bp 4953 chr4 76442037 76442037 1 + G C STAD 76442037 + 76442017 76442057 41 TATTAGCAATGAAAAGACTTGATGTGAATGCAGCCGGCATT TATTAGCAATGAAAAGACTTCATGTGAATGCAGCCGGCATT Direct Loss 0.940466739124363 0 NA NA prediction 0.880933478248725 Functional Loss - THAP6 ENSG00000174796 CDS Human protein_coding chr4:76442037 chr4:76442037 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5087 0 0 1 5 1 THAP6 chr4:76441982 3'AG 76441982 Downstream 56bp 4954 chr19 16791255 16791255 1 + G A SARC 16791255 + 16791235 16791275 41 CCTCTTCTACAAGTGTGTCTGCTTCCTGCCTGTGAAACTCA CCTCTTCTACAAGTGTGTCTACTTCCTGCCTGTGAAACTCA Direct Loss 0.940459357044755 0 NA NA prediction 0.88091871408951 Functional Loss - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16791255 chr19:16791255 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5090 0 0 1 0 1 TMEM38A chr19:16791208 3'AG 16791208 Downstream 48bp 4955 chr7 39606107 39606107 1 + G A rs1051162 39606107 + 39606087 39606127 41 GCAGACGAGTCGCTCCTGGCGCAGCGGGAATGGCAGAGTAA GCAGACGAGTCGCTCCTGGCACAGCGGGAATGGCAGAGTAA Direct Loss 0.940454415984549 0 NA NA prediction 0.880908831969099 Functional Loss - YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39606107 chr7:39606107 synonymous SNV . 0 21 hm7G_associated_SNPs_5091 0 0 1 0 1 YAE1D1 chr7:39606146 5'GT 39606146 Upstream 40bp 4956 chr12 6493785 6493785 1 + G A SARC 6493785 + 6493765 6493805 41 TGCGTCGGAGAACCAGACCTGCAGGGACCAGGAAAAGGAAT TGCGTCGGAGAACCAGACCTACAGGGACCAGGAAAAGGAAT Direct Loss 0.940452917466133 0 NA NA prediction 0.880905834932267 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6493785 chr12:6493785 nonsynonymous SNV 0.936 5 21 hm7G_associated_SNPs_5092 0 0 1 0 2 LTBR chr12:6493754 3'AG 6493754 Downstream 32bp 4957 chr12 6493785 6493785 1 + G A SARC 6493785 + 6493765 6493805 41 TGCGTCGGAGAACCAGACCTGCAGGGACCAGGAAAAGGAAT TGCGTCGGAGAACCAGACCTACAGGGACCAGGAAAAGGAAT Direct Loss 0.940452917466133 0 NA NA prediction 0.880905834932267 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6493785 chr12:6493785 nonsynonymous SNV 0.936 5 21 hm7G_associated_SNPs_5092 0 0 1 0 2 LTBR chr12:6493850 5'GT 6493850 Upstream 66bp 4958 chr14 24606752 24606752 1 + G C HNSC 24606752 + 24606732 24606772 41 GAAGACAAGGATGAAAAGAAGAAGGGGGAGGATGAAGACAA GAAGACAAGGATGAAAAGAACAAGGGGGAGGATGAAGACAA Direct Loss 0.940448943987797 0 NA NA prediction 0.880897887975595 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24606752 chr14:24606752 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_5094 0 0 1 0 2 PSME1 chr14:24606729 3'AG 24606729 Downstream 24bp 4959 chr14 24606752 24606752 1 + G C HNSC 24606752 + 24606732 24606772 41 GAAGACAAGGATGAAAAGAAGAAGGGGGAGGATGAAGACAA GAAGACAAGGATGAAAAGAACAAGGGGGAGGATGAAGACAA Direct Loss 0.940448943987797 0 NA NA prediction 0.880897887975595 Functional Loss - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24606752 chr14:24606752 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_5094 0 0 1 0 2 PSME1 chr14:24606774 5'GT 24606774 Upstream 23bp 4960 chr3 44906567 44906567 1 + G A LIHC 44906567 + 44906547 44906587 41 GTGCTGTATGGAGAGTGCCAGGAGGTCTTGTGGTGGGGAGG GTGCTGTATGGAGAGTGCCAAGAGGTCTTGTGGTGGGGAGG Direct Loss 0.940446118837839 0 NA NA prediction 0.880892237675678 Functional Loss - TMEM42 ENSG00000169964 CDS Human protein_coding chr3:44906567 chr3:44906567 synonymous SNV . 0 21 hm7G_associated_SNPs_5095 0 0 1 0 1 TMEM42 chr3:44906532 3'AG 44906532 Downstream 36bp 4961 chr6 153076417 153076417 1 + G T OV 153076417 + 153076397 153076437 41 GTTTTAGAAATGCCAGGCATGCTGATGGAGTTTTCACCAGT GTTTTAGAAATGCCAGGCATTCTGATGGAGTTTTCACCAGT Direct Loss 0.940443241960191 0 NA NA prediction 0.880886483920381 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153076417 chr6:153076417 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5096 0 0 0 0 2 VIP chr6:153076404 3'AG 153076404 Downstream 14bp 4962 chr6 153076417 153076417 1 + G T OV 153076417 + 153076397 153076437 41 GTTTTAGAAATGCCAGGCATGCTGATGGAGTTTTCACCAGT GTTTTAGAAATGCCAGGCATTCTGATGGAGTTTTCACCAGT Direct Loss 0.940443241960191 0 NA NA prediction 0.880886483920381 Functional Loss - VIP ENSG00000146469 CDS Human protein_coding chr6:153076417 chr6:153076417 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5096 0 0 0 0 2 VIP chr6:153076508 5'GT 153076508 Upstream 92bp 4963 chr13 50204628 50204628 1 + G A rs141838885 50204628 + 50204608 50204648 41 CACAAGGCGGAAGCCCAGGTGGTGATGATGGGCCTGGACTC CACAAGGCGGAAGCCCAGGTAGTGATGATGGGCCTGGACTC Direct Loss 0.940437489277316 0 NA NA prediction 0.880874978554631 Functional Loss - ARL11 ENSG00000152213 CDS Human protein_coding chr13:50204628 chr13:50204628 synonymous SNV . 0 21 hm7G_associated_SNPs_5097 0 0 0 0 1 ARL11 chr13:50204566 3'AG 50204566 Downstream 63bp 4964 chr6 138734093 138734093 1 + G T SKCM 138734093 + 138734073 138734113 41 CAAGCATTTTAAGGGAAGATGGAAAAGTTTTCGATGAGAAG CAAGCATTTTAAGGGAAGATTGAAAAGTTTTCGATGAGAAG Direct Loss 0.940435492854921 0 NA NA prediction 0.880870985709842 Functional Loss - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138734093 chr6:138734093 stopgain 0.998 1 21 hm7G_associated_SNPs_5098 0 0 1 0 1 HEBP2 chr6:138734017 3'AG 138734017 Downstream 77bp 4965 chr1 100111888 100111888 1 + G T UCEC 100111888 + 100111868 100111908 41 TCTAGAATGGAAGAAGCTGAGCTGGTGAAGGGAAGACTCCA TCTAGAATGGAAGAAGCTGATCTGGTGAAGGGAAGACTCCA Direct Loss 0.940425197122687 0 NA NA prediction 0.880850394245375 Functional Loss - PALMD ENSG00000099260 CDS Human protein_coding chr1:100111888 chr1:100111888 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5101 0 0 1 0 1 PALMD chr1:100111918 5'GT 100111918 Upstream 31bp 4966 chr17 70117876 70117876 1 + G A COAD 70117876 + 70117856 70117896 41 CATGAACGCCTTCATGGTGTGGGCGCAGGCGGCGCGCAGGA CATGAACGCCTTCATGGTGTAGGCGCAGGCGGCGCGCAGGA Direct Loss 0.940419459773087 0 NA NA prediction 0.880838919546174 Functional Loss - SOX9 ENSG00000125398 CDS Human protein_coding chr17:70117876 chr17:70117876 stopgain 0.998 0 21 hm7G_associated_SNPs_5102 0 0 1 0 1 SOX9 chr17:70117963 5'GT 70117963 Upstream 88bp 4967 chr22 40757331 40757331 1 + G A GBM 40757331 + 40757311 40757351 41 AGGAGATGGAGGAACCCTTTGAAAAACAGCAGATTGGTGAG AGGAGATGGAGGAACCCTTTAAAAAACAGCAGATTGGTGAG Direct Loss 0.940408372934189 0 NA NA prediction 0.880816745868378 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40757331 chr22:40757331 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5103 0 0 1 0 2 ADSL chr22:40757277 3'AG 40757277 Downstream 55bp 4968 chr22 40757331 40757331 1 + G A GBM 40757331 + 40757311 40757351 41 AGGAGATGGAGGAACCCTTTGAAAAACAGCAGATTGGTGAG AGGAGATGGAGGAACCCTTTAAAAAACAGCAGATTGGTGAG Direct Loss 0.940408372934189 0 NA NA prediction 0.880816745868378 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40757331 chr22:40757331 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5103 0 0 1 0 2 ADSL chr22:40757346 5'GT 40757346 Upstream 16bp 4969 chr15 85431054 85431054 1 + G A SKCM 85431054 + 85431034 85431074 41 ACACCTGTGGCCAAGGGTCTGGAGAACATGGGGGCTGATTT ACACCTGTGGCCAAGGGTCTAGAGAACATGGGGGCTGATTT Direct Loss 0.940406896205445 0 NA NA prediction 0.880813792410891 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85431054 chr15:85431054 synonymous SNV . 0 21 hm7G_associated_SNPs_5104 0 0 1 0 2 SLC28A1 chr15:85430976 3'AG 85430976 Downstream 79bp 4970 chr15 85431054 85431054 1 + G A SKCM 85431054 + 85431034 85431074 41 ACACCTGTGGCCAAGGGTCTGGAGAACATGGGGGCTGATTT ACACCTGTGGCCAAGGGTCTAGAGAACATGGGGGCTGATTT Direct Loss 0.940406896205445 0 NA NA prediction 0.880813792410891 Functional Loss - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85431054 chr15:85431054 synonymous SNV . 0 21 hm7G_associated_SNPs_5104 0 0 1 0 2 SLC28A1 chr15:85431087 5'GT 85431087 Upstream 34bp 4971 chr7 123296211 123296211 1 + G A STAD 123296211 + 123296191 123296231 41 AACCCCCACAGGGACATTCAGCAGAGAGGCACTGATGGCCT AACCCCCACAGGGACATTCAACAGAGAGGCACTGATGGCCT Direct Loss 0.940400533943536 0 NA NA prediction 0.880801067887071 Functional Loss - LMOD2 ENSG00000170807 CDS Human protein_coding chr7:123296211 chr7:123296211 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_5106 0 0 0 0 1 LMOD2 chr7:123296290 5'GT 123296290 Upstream 80bp 4972 chr19 38782538 38782538 1 + G A SKCM 38782538 + 38782518 38782558 41 CTCTTCCTGGGAGCCTCCATGGTCTACCTGATCCGGGTGGC CTCTTCCTGGGAGCCTCCATAGTCTACCTGATCCGGGTGGC Direct Loss 0.940396329719203 0 NA NA prediction 0.880792659438405 Functional Loss - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38782538 chr19:38782538 nonsynonymous SNV 0.958 0 21 hm7G_associated_SNPs_5109 0 0 1 0 1 SPINT2 chr19:38782480 3'AG 38782480 Downstream 59bp 4973 chr11 118984862 118984862 1 + G A BLCA 118984862 + 118984842 118984882 41 TGGAAGCCTCAGTGCAGGATGATGCAGGGACCAGCGGAGGC TGGAAGCCTCAGTGCAGGATAATGCAGGGACCAGCGGAGGC Direct Loss 0.94038880075575 0 NA NA prediction 0.8807776015115 Functional Loss - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118984862 chr11:118984862 nonsynonymous SNV 0.980 0 21 hm7G_associated_SNPs_5111 0 0 0 0 1 C2CD2L chr11:118984790 3'AG 118984790 Downstream 73bp 4974 chr1 171227315 171227315 1 + G A LUSC 171227315 + 171227295 171227335 41 AGAAGGACTGGAGCCCACCTGCTTTGAGAGGAGCGATGACC AGAAGGACTGGAGCCCACCTACTTTGAGAGGAGCGATGACC Direct Loss 0.9403847567479 0 NA NA prediction 0.880769513495799 Functional Loss - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171227315 chr1:171227315 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_5112 0 0 0 0 2 FMO1 chr1:171227221 3'AG 171227221 Downstream 95bp 4975 chr1 171227315 171227315 1 + G A LUSC 171227315 + 171227295 171227335 41 AGAAGGACTGGAGCCCACCTGCTTTGAGAGGAGCGATGACC AGAAGGACTGGAGCCCACCTACTTTGAGAGGAGCGATGACC Direct Loss 0.9403847567479 0 NA NA prediction 0.880769513495799 Functional Loss - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171227315 chr1:171227315 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_5112 0 0 0 0 2 FMO1 chr1:171227358 5'GT 171227358 Upstream 44bp 4976 chr9 137777208 137777208 1 + G A SKCM 137777208 + 137777188 137777228 41 GGACACGGACGGAGGGGGCTGGACCGTGAGTGTGGGGCTGG GGACACGGACGGAGGGGGCTAGACCGTGAGTGTGGGGCTGG Direct Loss 0.940383542287532 0 NA NA prediction 0.880767084575064 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777208 chr9:137777208 stopgain 0.332 0 21 hm7G_associated_SNPs_5113 0 0 0 0 1 FCN2 chr9:137777212 5'GT 137777212 Upstream 5bp 4977 chr12 58010132 58010132 1 + G A rs79529064 58010132 + 58010112 58010152 41 ACAGCCTGGGGCGGCCAAGAGGGCCTGGAGTGGGGAGCCCT ACAGCCTGGGGCGGCCAAGAAGGCCTGGAGTGGGGAGCCCT Direct Loss 0.940374819298726 0 NA NA prediction 0.880749638597453 Functional Loss - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58010132 chr12:58010132 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_5114 0 0 1 0 1 ARHGEF25 chr12:58010067 3'AG 58010067 Downstream 66bp 4978 chr5 154339563 154339563 1 + G A rs199581413 154339563 + 154339543 154339583 41 CTCTTAGAAGCACAAGATATGGCAGTGAGAGACCATAACGT CTCTTAGAAGCACAAGATATAGCAGTGAGAGACCATAACGT Direct Loss 0.94036266232555 0 NA NA prediction 0.880725324651101 Functional Loss - MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154339563 chr5:154339563 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5116 0 0 1 0 2 MRPL22 chr5:154339540 3'AG 154339540 Downstream 24bp 4979 chr5 154339563 154339563 1 + G A rs199581413 154339563 + 154339543 154339583 41 CTCTTAGAAGCACAAGATATGGCAGTGAGAGACCATAACGT CTCTTAGAAGCACAAGATATAGCAGTGAGAGACCATAACGT Direct Loss 0.94036266232555 0 NA NA prediction 0.880725324651101 Functional Loss - MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154339563 chr5:154339563 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5116 0 0 1 0 2 MRPL22 chr5:154339609 5'GT 154339609 Upstream 47bp 4980 chr19 14141551 14141551 1 + G A BLCA 14141551 + 14141531 14141571 41 TCCCGGATGCAGATGCTGATGAAGACAGTCTGGCAGGCGAG TCCCGGATGCAGATGCTGATAAAGACAGTCTGGCAGGCGAG Direct Loss 0.940361734115152 0 NA NA prediction 0.880723468230304 Functional Loss - RLN3 ENSG00000171136 CDS Human protein_coding chr19:14141551 chr19:14141551 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_5117 0 0 0 0 1 RLN3 chr19:14141522 3'AG 14141522 Downstream 30bp 4981 chr17 8172162 8172162 1 + G T SARC 8172162 + 8172142 8172182 41 CCGTGCTGCCCGTGTGGAGTGCGCACGGGGAAGGTCAGGCC CCGTGCTGCCCGTGTGGAGTTCGCACGGGGAAGGTCAGGCC Direct Loss 0.940352280431921 0 NA NA prediction 0.880704560863843 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8172162 chr17:8172162 nonsynonymous SNV 0.170 1 21 hm7G_associated_SNPs_5118 0 0 1 0 1 PFAS chr17:8172174 5'GT 8172174 Upstream 13bp 4982 chr11 66410965 66410965 1 + G A STAD 66410965 + 66410945 66410985 41 CCACCAGCCGGCTTAGGACTGCGCCCGGGATGGGAGACCAG CCACCAGCCGGCTTAGGACTACGCCCGGGATGGGAGACCAG Direct Loss 0.940349183949999 0 NA NA prediction 0.880698367899999 Functional Loss - RBM14-RBM4;RBM4 ENSG00000173933;ENSG00000248643 CDS Human other chr11:66410965 chr11:66410965 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5119 0 0 1 0 1 RBM14-RBM4;RBM4 chr11:66410921 3'AG 66410921 Downstream 45bp 4983 chrX 103044289 103044289 1 + G A GBM 103044289 + 103044269 103044309 41 TGACCTTCCACCTGTTTATTGCTGCATTTGTGGGGGCTGCA TGACCTTCCACCTGTTTATTACTGCATTTGTGGGGGCTGCA Direct Loss 0.94033639616852 0 NA NA prediction 0.880672792337041 Functional Loss - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103044289 chrX:103044289 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5120 0 0 1 0 2 PLP1 chrX:103044262 3'AG 103044262 Downstream 28bp 4984 chrX 103044289 103044289 1 + G A GBM 103044289 + 103044269 103044309 41 TGACCTTCCACCTGTTTATTGCTGCATTTGTGGGGGCTGCA TGACCTTCCACCTGTTTATTACTGCATTTGTGGGGGCTGCA Direct Loss 0.94033639616852 0 NA NA prediction 0.880672792337041 Functional Loss - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103044289 chrX:103044289 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5120 0 0 1 0 2 PLP1 chrX:103044327 5'GT 103044327 Upstream 39bp 4985 chr6 112386122 112386122 1 + G A SKCM 112386122 + 112386102 112386142 41 ACTGCTCTGGAGCTAAAGGTGGAAAGAAGTCTGATCAGTCA ACTGCTCTGGAGCTAAAGGTAGAAAGAAGTCTGATCAGTCA Direct Loss 0.940328428299702 0 NA NA prediction 0.880656856599405 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112386122 chr6:112386122 nonsynonymous SNV 0.040 0 21 hm7G_associated_SNPs_5122 0 0 0 1 1 WISP3 chr6:112386200 5'GT 112386200 Upstream 79bp 4986 chr19 38899406 38899406 1 + G A STAD 38899406 + 38899386 38899426 41 CTCAGGTGCTTATGGGCAACGTTCCAGACCGGGGGGGCCGC CTCAGGTGCTTATGGGCAACATTCCAGACCGGGGGGGCCGC Direct Loss 0.940325112008759 0 NA NA prediction 0.880650224017519 Functional Loss - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38899406 chr19:38899406 nonsynonymous SNV 0.959 2 21 hm7G_associated_SNPs_5124 0 0 1 0 1 FAM98C chr19:38899391 3'AG 38899391 Downstream 16bp 4987 chr6 160227045 160227045 1 + G C KIRC 160227045 + 160227025 160227065 41 AAAGACCAAATCAAGGTGGTGATTGACGAAGTGACGCGGTG AAAGACCAAATCAAGGTGGTCATTGACGAAGTGACGCGGTG Direct Loss 0.94032189195526 0 NA NA prediction 0.880643783910519 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160227045 chr6:160227045 synonymous SNV . 0 21 hm7G_associated_SNPs_5125 0 0 0 0 2 PNLDC1 chr6:160227015 3'AG 160227015 Downstream 31bp 4988 chr6 160227045 160227045 1 + G C KIRC 160227045 + 160227025 160227065 41 AAAGACCAAATCAAGGTGGTGATTGACGAAGTGACGCGGTG AAAGACCAAATCAAGGTGGTCATTGACGAAGTGACGCGGTG Direct Loss 0.94032189195526 0 NA NA prediction 0.880643783910519 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160227045 chr6:160227045 synonymous SNV . 0 21 hm7G_associated_SNPs_5125 0 0 0 0 2 PNLDC1 chr6:160227115 5'GT 160227115 Upstream 71bp 4989 chr2 105954070 105954070 1 + G A UCEC 105954070 + 105954050 105954090 41 GGGGGATGTGGGCGGTCGCAGCTGCACGGACTCGGAACTGC GGGGGATGTGGGCGGTCGCAACTGCACGGACTCGGAACTGC Direct Loss 0.940317558243677 0 NA NA prediction 0.880635116487355 Functional Loss - C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105954070 chr2:105954070 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5127 0 0 1 0 1 C2orf49 chr2:105954143 5'GT 105954143 Upstream 74bp 4990 chr1 150048364 150048364 1 + G A HNSC 150048364 + 150048344 150048384 41 AGTCATTGGCTGAAGCTGATGAACAGGAAGTTGTGGCTGAG AGTCATTGGCTGAAGCTGATAAACAGGAAGTTGTGGCTGAG Direct Loss 0.940312794638304 0 NA NA prediction 0.880625589276608 Functional Loss - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150048364 chr1:150048364 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5128 0 0 1 0 2 VPS45 chr1:150048311 3'AG 150048311 Downstream 54bp 4991 chr1 150048364 150048364 1 + G A HNSC 150048364 + 150048344 150048384 41 AGTCATTGGCTGAAGCTGATGAACAGGAAGTTGTGGCTGAG AGTCATTGGCTGAAGCTGATAAACAGGAAGTTGTGGCTGAG Direct Loss 0.940312794638304 0 NA NA prediction 0.880625589276608 Functional Loss - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150048364 chr1:150048364 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5128 0 0 1 0 2 VPS45 chr1:150048390 5'GT 150048390 Upstream 27bp 4992 chr7 100482050 100482050 1 + G C rs80278106 100482050 + 100482030 100482070 41 ATCCTGGAGCAGGAGGAGGAGGAGGAGCAGGCAGGAAAGCC ATCCTGGAGCAGGAGGAGGACGAGGAGCAGGCAGGAAAGCC Direct Loss 0.94030887109311 0 NA NA prediction 0.88061774218622 Functional Loss - SRRT ENSG00000087087 CDS Human protein_coding chr7:100482050 chr7:100482050 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_5129 0 0 1 0 1 SRRT chr7:100481989 3'AG 100481989 Downstream 62bp 4993 chr19 48973647 48973647 1 + G A UCEC 48973647 + 48973627 48973667 41 CCGGAGGAGCGGATGGAGCTGGAGAACATCCGGCGGCGGAA CCGGAGGAGCGGATGGAGCTAGAGAACATCCGGCGGCGGAA Direct Loss 0.940304671402656 0 NA NA prediction 0.880609342805312 Functional Loss - CYTH2 ENSG00000105443;ENSG00000268465 CDS Human protein_coding chr19:48973647 chr19:48973647 synonymous SNV . 0 21 hm7G_associated_SNPs_5131 0 0 1 0 1 CYTH2 chr19:48973610 3'AG 48973610 Downstream 38bp 4994 chr12 31819079 31819079 1 + G T SKCM 31819079 + 31819059 31819099 41 CTGTATTAGATCTTGGGAGTGGATGTGGAGCTACAGCTATT CTGTATTAGATCTTGGGAGTTGATGTGGAGCTACAGCTATT Direct Loss 0.940287535717849 0 NA NA prediction 0.880575071435699 Functional Loss - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31819079 chr12:31819079 stopgain 1.000 1 21 hm7G_associated_SNPs_5132 0 0 0 0 2 ETFBKMT chr12:31819021 3'AG 31819021 Downstream 59bp 4995 chr12 31819079 31819079 1 + G T SKCM 31819079 + 31819059 31819099 41 CTGTATTAGATCTTGGGAGTGGATGTGGAGCTACAGCTATT CTGTATTAGATCTTGGGAGTTGATGTGGAGCTACAGCTATT Direct Loss 0.940287535717849 0 NA NA prediction 0.880575071435699 Functional Loss - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31819079 chr12:31819079 stopgain 1.000 1 21 hm7G_associated_SNPs_5132 0 0 0 0 2 ETFBKMT chr12:31819151 5'GT 31819151 Upstream 73bp 4996 chr20 25258975 25258975 1 + G A UCEC 25258975 + 25258955 25258995 41 TTCTTTGAGGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTT TTCTTTGAGGGGAAGGAGCTACGGCTGAAGCAGGAGTACTT Direct Loss 0.940281765522999 0 NA NA prediction 0.880563531045997 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25258975 chr20:25258975 synonymous SNV . 0 21 hm7G_associated_SNPs_5134 0 0 1 0 1 PYGB chr20:25258955 3'AG 25258955 Downstream 21bp 4997 chr15 41011012 41011012 1 + G A BLCA 41011012 + 41010992 41011032 41 GTTCTCTATAGCTTCCCATTGACCGGGGTGGAGGTGAAGGA GTTCTCTATAGCTTCCCATTAACCGGGGTGGAGGTGAAGGA Direct Loss 0.940279875123961 0 NA NA prediction 0.880559750247923 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41011012 chr15:41011012 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5136 0 0 1 0 1 RAD51 chr15:41011003 3'AG 41011003 Downstream 10bp 4998 chr13 77570191 77570191 1 + G T LUSC 77570191 + 77570171 77570211 41 GTGTAATCAAGGCGCTGCCTGCTTTTTTGAGGGAATTGATG GTGTAATCAAGGCGCTGCCTTCTTTTTTGAGGGAATTGATG Direct Loss 0.940250194330428 0 NA NA prediction 0.880500388660855 Functional Loss - CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570191 chr13:77570191 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5139 0 0 1 0 1 CLN5 chr13:77570262 5'GT 77570262 Upstream 72bp 4999 chr7 810223 810223 1 + G A OV 810223 + 810203 810243 41 TCCATCCTGTCCACCGTGCTGCTCAGAGCCACGGACACCAT TCCATCCTGTCCACCGTGCTACTCAGAGCCACGGACACCAT Direct Loss 0.9402401256889 0 NA NA prediction 0.8804802513778 Functional Loss - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:810223 chr7:810223 synonymous SNV . 0 21 hm7G_associated_SNPs_5140 0 0 1 0 1 DNAAF5 chr7:810255 5'GT 810255 Upstream 33bp 5000 chr19 3118943 3118943 1 + G T SKCM 3118943 + 3118923 3118963 41 ATGGTGGATGTGGGGGGCCAGCGGTCGGAGCGGAGGAAGTG ATGGTGGATGTGGGGGGCCATCGGTCGGAGCGGAGGAAGTG Direct Loss 0.940235151156842 0 NA NA prediction 0.880470302313683 Functional Loss - GNA11 ENSG00000088256 CDS Human protein_coding chr19:3118943 chr19:3118943 nonsynonymous SNV 0.387 2 21 hm7G_associated_SNPs_5141 0 0 1 0 1 GNA11 chr19:3118922 3'AG 3118922 Downstream 22bp 5001 chrX 99917318 99917318 1 + G A UCEC 99917318 + 99917298 99917338 41 TTGATTGGAAGGAGGTCGGTGCAATGCCTGCCAAGCCGTCG TTGATTGGAAGGAGGTCGGTACAATGCCTGCCAAGCCGTCG Direct Loss 0.940224593760497 0 NA NA prediction 0.880449187520995 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99917318 chrX:99917318 synonymous SNV . 0 21 hm7G_associated_SNPs_5142 0 0 1 0 1 SRPX2 chrX:99917364 5'GT 99917364 Upstream 47bp 5002 chr12 51207834 51207834 1 + G A BLCA 51207834 + 51207814 51207854 41 CCTTACAGTTGGCAAGTCCAGGCACAGATGGAGTACAGGGA CCTTACAGTTGGCAAGTCCAAGCACAGATGGAGTACAGGGA Direct Loss 0.940223650674402 0 NA NA prediction 0.880447301348804 Functional Loss - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51207834 chr12:51207834 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_5143 0 0 1 0 1 ATF1 chr12:51207793 3'AG 51207793 Downstream 42bp 5003 chr17 65026632 65026632 1 + G C BLCA 65026632 + 65026612 65026652 41 ACATTTCCAGCAACACAGGTGACCCGAGTGACAAGCGGGAC ACATTTCCAGCAACACAGGTCACCCGAGTGACAAGCGGGAC Direct Loss 0.940218499147302 0 NA NA prediction 0.880436998294605 Functional Loss - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65026632 chr17:65026632 nonsynonymous SNV 0.905 5 21 hm7G_associated_SNPs_5144 0 0 0 0 1 CACNG4 chr17:65026582 3'AG 65026582 Downstream 51bp 5004 chr10 114044355 114044355 1 + G A SKCM 114044355 + 114044335 114044375 41 AAATCCCCGAGTGTCCCTATGGATGGGAAGTTCATCAGCTG AAATCCCCGAGTGTCCCTATAGATGGGAAGTTCATCAGCTG Direct Loss 0.940214097645858 0 NA NA prediction 0.880428195291717 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114044355 chr10:114044355 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_5145 0 0 0 0 1 TECTB chr10:114044293 3'AG 114044293 Downstream 63bp 5005 chr10 114057858 114057858 1 + G T LUSC 114057858 + 114057838 114057878 41 ATGAAACCGTCCTCGTGCATGAGAATGGGAGAGATCACAGG ATGAAACCGTCCTCGTGCATTAGAATGGGAGAGATCACAGG Direct Loss 0.940208048877333 0 NA NA prediction 0.880416097754666 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114057858 chr10:114057858 stopgain 1.000 1 21 hm7G_associated_SNPs_5146 0 0 0 0 1 TECTB chr10:114057827 3'AG 114057827 Downstream 32bp 5006 chr11 82909600 82909600 1 + G T SARC 82909600 + 82909580 82909620 41 AAGCAGCTTTCAGAAATAGTGGTACGTGGAGCCAGCATTAA AAGCAGCTTTCAGAAATAGTTGTACGTGGAGCCAGCATTAA Direct Loss 0.940191736001054 0 NA NA prediction 0.880383472002108 Functional Loss - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82909600 chr11:82909600 synonymous SNV . 0 21 hm7G_associated_SNPs_5147 0 0 0 0 3 ANKRD42 chr11:82909521 3'AG 82909521 Downstream 80bp 5007 chr11 82909600 82909600 1 + G T SARC 82909600 + 82909580 82909620 41 AAGCAGCTTTCAGAAATAGTGGTACGTGGAGCCAGCATTAA AAGCAGCTTTCAGAAATAGTTGTACGTGGAGCCAGCATTAA Direct Loss 0.940191736001054 0 NA NA prediction 0.880383472002108 Functional Loss - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82909600 chr11:82909600 synonymous SNV . 0 21 hm7G_associated_SNPs_5147 0 0 0 0 3 ANKRD42 chr11:82909600 5'GT 82909600 Upstream 1bp 5008 chr11 82909600 82909600 1 + G T SARC 82909600 + 82909580 82909620 41 AAGCAGCTTTCAGAAATAGTGGTACGTGGAGCCAGCATTAA AAGCAGCTTTCAGAAATAGTTGTACGTGGAGCCAGCATTAA Direct Loss 0.940191736001054 0 NA NA prediction 0.880383472002108 Functional Loss - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82909600 chr11:82909600 synonymous SNV . 0 21 hm7G_associated_SNPs_5147 0 0 0 0 3 ANKRD42 chr11:82909684 5'GT 82909684 Upstream 85bp 5009 chr4 153809310 153809310 1 + G A SKCM 153809310 + 153809290 153809330 41 AATATGATGCATATCGCACTGATTTGGAAGAACTGAATCTT AATATGATGCATATCGCACTAATTTGGAAGAACTGAATCTT Direct Loss 0.940182983693999 0 NA NA prediction 0.880365967387998 Functional Loss - ARFIP1 ENSG00000164144 CDS Human protein_coding chr4:153809310 chr4:153809310 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5149 0 0 1 0 1 ARFIP1 chr4:153809285 3'AG 153809285 Downstream 26bp 5010 chr19 46177994 46177994 1 + G A BLCA 46177994 + 46177974 46178014 41 AACCTGTTCACGTCTTTCATGCTGCGAGCTGCGGCCATTCT AACCTGTTCACGTCTTTCATACTGCGAGCTGCGGCCATTCT Direct Loss 0.940180300563559 0 NA NA prediction 0.880360601127119 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46177994 chr19:46177994 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_5150 0 0 1 2 2 GIPR chr19:46177940 3'AG 46177940 Downstream 55bp 5011 chr19 46177994 46177994 1 + G A BLCA 46177994 + 46177974 46178014 41 AACCTGTTCACGTCTTTCATGCTGCGAGCTGCGGCCATTCT AACCTGTTCACGTCTTTCATACTGCGAGCTGCGGCCATTCT Direct Loss 0.940180300563559 0 NA NA prediction 0.880360601127119 Functional Loss - GIPR ENSG00000010310 CDS Human protein_coding chr19:46177994 chr19:46177994 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_5150 0 0 1 2 2 GIPR chr19:46178084 5'GT 46178084 Upstream 91bp 5012 chr2 15742715 15742715 1 + G T CESC 15742715 + 15742695 15742735 41 TGTCAAAGCAGAGAAGTAAAGGAATGGCATGGGTGTAGAGC TGTCAAAGCAGAGAAGTAAATGAATGGCATGGGTGTAGAGC Direct Loss 0.940179192497325 0 NA NA prediction 0.880358384994649 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15742715 chr2:15742715 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_5151 0 0 1 0 2 DDX1 chr2:15742672 3'AG 15742672 Downstream 44bp 5013 chr2 15742715 15742715 1 + G T CESC 15742715 + 15742695 15742735 41 TGTCAAAGCAGAGAAGTAAAGGAATGGCATGGGTGTAGAGC TGTCAAAGCAGAGAAGTAAATGAATGGCATGGGTGTAGAGC Direct Loss 0.940179192497325 0 NA NA prediction 0.880358384994649 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15742715 chr2:15742715 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_5151 0 0 1 0 2 DDX1 chr2:15742755 5'GT 15742755 Upstream 41bp 5014 chr16 58292308 58292308 1 + G T LGG 58292308 + 58292288 58292328 41 CTGAAATTCGATGGAGTGAAGTTTCGAGAGAAGTGCATGAG CTGAAATTCGATGGAGTGAATTTTCGAGAGAAGTGCATGAG Direct Loss 0.940175174271211 0 NA NA prediction 0.880350348542422 Functional Loss - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58292308 chr16:58292308 nonsynonymous SNV 0.288 3 21 hm7G_associated_SNPs_5152 0 0 1 0 1 CCDC113 chr16:58292272 3'AG 58292272 Downstream 37bp 5015 chr17 35834731 35834731 1 + G T UCEC 35834731 + 35834711 35834751 41 AAGCTGAATGAAAAAGAAAAGGAGGTAACAAAAGGGAGGGG AAGCTGAATGAAAAAGAAAATGAGGTAACAAAAGGGAGGGG Direct Loss 0.940174106411223 0 NA NA prediction 0.880348212822446 Functional Loss - TADA2A ENSG00000108264 CDS Human other chr17:35834731 chr17:35834731 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5153 0 0 0 0 2 TADA2A chr17:35834661 3'AG 35834661 Downstream 71bp 5016 chr17 35834731 35834731 1 + G T UCEC 35834731 + 35834711 35834751 41 AAGCTGAATGAAAAAGAAAAGGAGGTAACAAAAGGGAGGGG AAGCTGAATGAAAAAGAAAATGAGGTAACAAAAGGGAGGGG Direct Loss 0.940174106411223 0 NA NA prediction 0.880348212822446 Functional Loss - TADA2A ENSG00000108264 CDS Human other chr17:35834731 chr17:35834731 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5153 0 0 0 0 2 TADA2A chr17:35834734 5'GT 35834734 Upstream 4bp 5017 chrX 101381821 101381821 1 + G A CESC 101381821 + 101381801 101381841 41 ACATGGAAAAACTCTTCAATGAAAATGAAGGAATGCCTTCG ACATGGAAAAACTCTTCAATAAAAATGAAGGAATGCCTTCG Direct Loss 0.940169917605244 0 NA NA prediction 0.880339835210487 Functional Loss - TCEAL2 ENSG00000184905 CDS Human protein_coding chrX:101381821 chrX:101381821 nonsynonymous SNV 0.564 0 21 hm7G_associated_SNPs_5154 0 0 0 0 1 TCEAL2 chrX:101381776 3'AG 101381776 Downstream 46bp 5018 chr10 135122967 135122967 1 + G C rs533270851 135122967 + 135122947 135122987 41 CGACGTGCCTGAGAAGCCCAGGTAAGCGAATGGGCAGTGCC CGACGTGCCTGAGAAGCCCACGTAAGCGAATGGGCAGTGCC Direct Loss 0.940169777145175 0 NA NA prediction 0.88033955429035 Functional Loss - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135122967 chr10:135122967 nonsynonymous SNV 0.547 2 21 hm7G_associated_SNPs_5155 0 0 1 0 1 ZNF511 chr10:135122967 5'GT 135122967 Upstream 1bp 5019 chr5 72864343 72864343 1 + G A LUSC 72864343 + 72864323 72864363 41 TTTCGACAAGATGGTAGATTGCTTGTGGCTGGCAGTGAAGA TTTCGACAAGATGGTAGATTACTTGTGGCTGGCAGTGAAGA Direct Loss 0.940167184245815 0 NA NA prediction 0.88033436849163 Functional Loss - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72864343 chr5:72864343 synonymous SNV . 0 21 hm7G_associated_SNPs_5156 0 0 1 0 2 UTP15 chr5:72864245 3'AG 72864245 Downstream 99bp 5020 chr5 72864343 72864343 1 + G A LUSC 72864343 + 72864323 72864363 41 TTTCGACAAGATGGTAGATTGCTTGTGGCTGGCAGTGAAGA TTTCGACAAGATGGTAGATTACTTGTGGCTGGCAGTGAAGA Direct Loss 0.940167184245815 0 NA NA prediction 0.88033436849163 Functional Loss - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72864343 chr5:72864343 synonymous SNV . 0 21 hm7G_associated_SNPs_5156 0 0 1 0 2 UTP15 chr5:72864429 5'GT 72864429 Upstream 87bp 5021 chr2 202340442 202340442 1 + G A UCEC 202340442 + 202340422 202340462 41 GTGAGAGGGTTGAACTATCTGCACCAAAATGGCTGTATTCA GTGAGAGGGTTGAACTATCTACACCAAAATGGCTGTATTCA Direct Loss 0.940165204186764 0 NA NA prediction 0.880330408373527 Functional Loss - STRADB ENSG00000082146 CDS Human protein_coding chr2:202340442 chr2:202340442 synonymous SNV . 0 21 hm7G_associated_SNPs_5157 0 0 1 0 1 STRADB chr2:202340465 5'GT 202340465 Upstream 24bp 5022 chr12 57994202 57994202 1 + G A SARC 57994202 + 57994182 57994222 41 AAGAAAATATTTCTGGAGAAGCTGAAGAGAGATGTGGAGGT AAGAAAATATTTCTGGAGAAACTGAAGAGAGATGTGGAGGT Direct Loss 0.940165058778895 0 NA NA prediction 0.880330117557791 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57994202 chr12:57994202 synonymous SNV . 0 21 hm7G_associated_SNPs_5158 0 0 1 0 2 PIP4K2C chr12:57994107 3'AG 57994107 Downstream 96bp 5023 chr12 57994202 57994202 1 + G A SARC 57994202 + 57994182 57994222 41 AAGAAAATATTTCTGGAGAAGCTGAAGAGAGATGTGGAGGT AAGAAAATATTTCTGGAGAAACTGAAGAGAGATGTGGAGGT Direct Loss 0.940165058778895 0 NA NA prediction 0.880330117557791 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57994202 chr12:57994202 synonymous SNV . 0 21 hm7G_associated_SNPs_5158 0 0 1 0 2 PIP4K2C chr12:57994220 5'GT 57994220 Upstream 19bp 5024 chr1 184023924 184023924 1 + G T BRCA 184023924 + 184023904 184023944 41 TCCAGCTCATCTGCCTTGTTGGTACTGAGATAGAAGGGGAG TCCAGCTCATCTGCCTTGTTTGTACTGAGATAGAAGGGGAG Direct Loss 0.940161251547295 0 NA NA prediction 0.88032250309459 Functional Loss - TSEN15 ENSG00000198860 CDS Human protein_coding chr1:184023924 chr1:184023924 nonsynonymous SNV 0.980 4 21 hm7G_associated_SNPs_5159 0 0 1 0 2 TSEN15 chr1:184023862 3'AG 184023862 Downstream 63bp 5025 chr1 184023924 184023924 1 + G T BRCA 184023924 + 184023904 184023944 41 TCCAGCTCATCTGCCTTGTTGGTACTGAGATAGAAGGGGAG TCCAGCTCATCTGCCTTGTTTGTACTGAGATAGAAGGGGAG Direct Loss 0.940161251547295 0 NA NA prediction 0.88032250309459 Functional Loss - TSEN15 ENSG00000198860 CDS Human protein_coding chr1:184023924 chr1:184023924 nonsynonymous SNV 0.980 4 21 hm7G_associated_SNPs_5159 0 0 1 0 2 TSEN15 chr1:184023997 5'GT 184023997 Upstream 74bp 5026 chr13 26970436 26970436 1 + G T UCEC 26970436 + 26970416 26970456 41 TCACAGATAAAGATTGGGAAGATATAAAAAAGATGCCTGAA TCACAGATAAAGATTGGGAATATATAAAAAAGATGCCTGAA Direct Loss 0.940160478846878 0 NA NA prediction 0.880320957693755 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26970436 chr13:26970436 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5160 0 0 0 0 2 CDK8 chr13:26970422 3'AG 26970422 Downstream 15bp 5027 chr13 26970436 26970436 1 + G T UCEC 26970436 + 26970416 26970456 41 TCACAGATAAAGATTGGGAAGATATAAAAAAGATGCCTGAA TCACAGATAAAGATTGGGAATATATAAAAAAGATGCCTGAA Direct Loss 0.940160478846878 0 NA NA prediction 0.880320957693755 Functional Loss - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26970436 chr13:26970436 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5160 0 0 0 0 2 CDK8 chr13:26970491 5'GT 26970491 Upstream 56bp 5028 chr19 12779429 12779429 1 - C T BLCA 12779429 - 12779409 12779449 41 CCACTTACCTTTCCCTAGCTGAAGTGGTGTGCTTGGGTCGC CCACTTACCTTTCCCTAGCTAAAGTGGTGTGCTTGGGTCGC Direct Loss 0.940159696974978 0 NA NA prediction 0.880319393949955 Functional Loss - WDR83OS ENSG00000105583 CDS Human protein_coding chr19:12779429 chr19:12779429 synonymous SNV . 0 21 hm7G_associated_SNPs_5161 0 0 1 0 2 WDR83OS chr19:12779334 5'GT 12779334 Upstream 96bp 5029 chr19 12779429 12779429 1 - C T BLCA 12779429 - 12779409 12779449 41 CCACTTACCTTTCCCTAGCTGAAGTGGTGTGCTTGGGTCGC CCACTTACCTTTCCCTAGCTAAAGTGGTGTGCTTGGGTCGC Direct Loss 0.940159696974978 0 NA NA prediction 0.880319393949955 Functional Loss - WDR83OS ENSG00000105583 CDS Human protein_coding chr19:12779429 chr19:12779429 synonymous SNV . 0 21 hm7G_associated_SNPs_5161 0 0 1 0 2 WDR83OS chr19:12779431 3'AG 12779431 Downstream 3bp 5030 chr12 121134160 121134160 1 + G T UCEC 121134160 + 121134140 121134180 41 ATCCGGGATTGGAGAAGAAAGAAGAGGAAGAAGAAGAAGAA ATCCGGGATTGGAGAAGAAATAAGAGGAAGAAGAAGAAGAA Direct Loss 0.940154991266016 0 NA NA prediction 0.880309982532032 Functional Loss - MLEC ENSG00000110917 CDS Human protein_coding chr12:121134160 chr12:121134160 stopgain 1.000 1 21 hm7G_associated_SNPs_5162 0 0 1 0 1 MLEC chr12:121134119 3'AG 121134119 Downstream 42bp 5031 chr13 25264547 25264547 1 + G T LIHC 25264547 + 25264527 25264567 41 CTGGTGGTGGGGGACATTGTGGAGGTCAAAGGAGGAGACCA CTGGTGGTGGGGGACATTGTTGAGGTCAAAGGAGGAGACCA Direct Loss 0.940145646100354 0 NA NA prediction 0.880291292200708 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264547 chr13:25264547 synonymous SNV . 0 21 hm7G_associated_SNPs_5163 0 0 0 0 2 ATP12A chr13:25264476 3'AG 25264476 Downstream 72bp 5032 chr13 25264547 25264547 1 + G T LIHC 25264547 + 25264527 25264567 41 CTGGTGGTGGGGGACATTGTGGAGGTCAAAGGAGGAGACCA CTGGTGGTGGGGGACATTGTTGAGGTCAAAGGAGGAGACCA Direct Loss 0.940145646100354 0 NA NA prediction 0.880291292200708 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264547 chr13:25264547 synonymous SNV . 0 21 hm7G_associated_SNPs_5163 0 0 0 0 2 ATP12A chr13:25264610 5'GT 25264610 Upstream 64bp 5033 chr20 34022565 34022565 1 - C T HNSC 34022565 - 34022545 34022585 41 CTAGATGACCGAGGTCCCGTGGTCAGGAAGCAGAGGTACGT CTAGATGACCGAGGTCCCGTAGTCAGGAAGCAGAGGTACGT Direct Loss 0.940141028731006 0 NA NA prediction 0.880282057462012 Functional Loss - GDF5;GDF5OS ENSG00000125965;ENSG00000204183 CDS Human other chr20:34022565 chr20:34022565 synonymous SNV . 0 21 hm7G_associated_SNPs_5164 0 0 0 0 1 GDF5;GDF5OS chr20:34022581 3'AG 34022581 Downstream 17bp 5034 chr4 3251171 3251171 1 + G T LUSC 3251171 + 3251151 3251191 41 ACCAAGCGCAACGCCAAGGTGTACGAGAAGATGGCCAGCAA ACCAAGCGCAACGCCAAGGTTTACGAGAAGATGGCCAGCAA Direct Loss 0.940105723528211 0 NA NA prediction 0.880211447056422 Functional Loss - MSANTD1 ENSG00000188981 CDS Human protein_coding chr4:3251171 chr4:3251171 synonymous SNV . 0 21 hm7G_associated_SNPs_5170 0 0 0 0 1 MSANTD1 chr4:3251269 5'GT 3251269 Upstream 99bp 5035 chr12 22199458 22199458 1 + G C LGG 22199458 + 22199438 22199478 41 GGGGGTCCCGCTCATTGGCTGGGTCCTGCGTGCGGCCCTGG GGGGGTCCCGCTCATTGGCTCGGTCCTGCGTGCGGCCCTGG Direct Loss 0.94010180772177 0 NA NA prediction 0.88020361544354 Functional Loss - CMAS ENSG00000111726 CDS Human protein_coding chr12:22199458 chr12:22199458 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5171 0 0 1 0 1 CMAS chr12:22199497 5'GT 22199497 Upstream 40bp 5036 chr3 195410688 195410688 1 + G A STAD 195410688 + 195410668 195410708 41 CAGAAGAAGCCCTTTGAGGTGCACTGGAGGAAGCACACCCT CAGAAGAAGCCCTTTGAGGTACACTGGAGGAAGCACACCCT Direct Loss 0.940098363731296 0 NA NA prediction 0.880196727462591 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195410688 chr3:195410688 . . 0 21 hm7G_associated_SNPs_5172 0 0 1 0 2 SDHAP2 chr3:195410623 3'AG 195410623 Downstream 66bp 5037 chr3 195410688 195410688 1 + G A STAD 195410688 + 195410668 195410708 41 CAGAAGAAGCCCTTTGAGGTGCACTGGAGGAAGCACACCCT CAGAAGAAGCCCTTTGAGGTACACTGGAGGAAGCACACCCT Direct Loss 0.940098363731296 0 NA NA prediction 0.880196727462591 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195410688 chr3:195410688 . . 0 21 hm7G_associated_SNPs_5172 0 0 1 0 2 SDHAP2 chr3:195410736 5'GT 195410736 Upstream 49bp 5038 chr1 161647308 161647308 1 + G T OV 161647308 + 161647288 161647328 41 CACTTCTCATGCACCCGGATGCTCTGGAAGAGCCTGATGAC CACTTCTCATGCACCCGGATTCTCTGGAAGAGCCTGATGAC Direct Loss 0.940088893409411 0 NA NA prediction 0.880177786818823 Functional Loss - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161647308 chr1:161647308 nonsynonymous SNV 0.000 1 21 hm7G_associated_SNPs_5173 0 0 1 0 1 FCGR2B chr1:161647266 3'AG 161647266 Downstream 43bp 5039 chrX 47101705 47101705 1 + G T LUSC 47101705 + 47101685 47101725 41 CCGCGCCGCAAGCCAGAGCAGGTGTGGGGCAGTGGGGGCCT CCGCGCCGCAAGCCAGAGCATGTGTGGGGCAGTGGGGGCCT Direct Loss 0.940071876830417 0 NA NA prediction 0.880143753660835 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101705 chrX:47101705 nonsynonymous SNV 0.960 4 21 hm7G_associated_SNPs_5174 0 0 1 0 1 USP11 chrX:47101705 5'GT 47101705 Upstream 1bp 5040 chr11 69465985 69465985 1 + G T LUSC 69465985 + 69465965 69466005 41 CCAAGGCCGCCGAGGAGGAGGAAGAGGAGGAGGAGGAGGTG CCAAGGCCGCCGAGGAGGAGTAAGAGGAGGAGGAGGAGGTG Direct Loss 0.940070538894117 0 NA NA prediction 0.880141077788235 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69465985 chr11:69465985 stopgain 0.649 0 21 hm7G_associated_SNPs_5176 0 0 1 0 1 CCND1 chr11:69465886 3'AG 69465886 Downstream 100bp 5041 chr6 117023296 117023296 1 + G A CESC 117023296 + 117023276 117023316 41 AACTTCTTAATTCTGAACATGAAGATGTTCAGGAACAGGTA AACTTCTTAATTCTGAACATAAAGATGTTCAGGAACAGGTA Direct Loss 0.940062734732287 0 NA NA prediction 0.880125469464574 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117023296 chr6:117023296 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5177 0 0 1 0 1 KPNA5 chr6:117023313 5'GT 117023313 Upstream 18bp 5042 chr7 89791296 89791296 1 + G A LGG 89791296 + 89791276 89791316 41 ATGGAGATTTATGTGTCTCTGGGAATTGTGGGATTGGCAAT ATGGAGATTTATGTGTCTCTAGGAATTGTGGGATTGGCAAT Direct Loss 0.940047570517103 0 NA NA prediction 0.880095141034206 Functional Loss - STEAP1 ENSG00000164647 CDS Human protein_coding chr7:89791296 chr7:89791296 synonymous SNV . 0 21 hm7G_associated_SNPs_5179 0 0 0 0 2 STEAP1 chr7:89791228 3'AG 89791228 Downstream 69bp 5043 chr7 89791296 89791296 1 + G A LGG 89791296 + 89791276 89791316 41 ATGGAGATTTATGTGTCTCTGGGAATTGTGGGATTGGCAAT ATGGAGATTTATGTGTCTCTAGGAATTGTGGGATTGGCAAT Direct Loss 0.940047570517103 0 NA NA prediction 0.880095141034206 Functional Loss - STEAP1 ENSG00000164647 CDS Human protein_coding chr7:89791296 chr7:89791296 synonymous SNV . 0 21 hm7G_associated_SNPs_5179 0 0 0 0 2 STEAP1 chr7:89791392 5'GT 89791392 Upstream 97bp 5044 chr6 167592019 167592019 1 + G A LUSC 167592019 + 167591999 167592039 41 CAGAAAGACGGGAGGTGTCTGAAGACGGAAAGGTGACCTCG CAGAAAGACGGGAGGTGTCTAAAGACGGAAAGGTGACCTCG Direct Loss 0.94004421532771 0 NA NA prediction 0.880088430655421 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167592019 chr6:167592019 nonsynonymous SNV 0.003 1 21 hm7G_associated_SNPs_5180 0 0 0 0 1 TCP10L2 chr6:167592030 5'GT 167592030 Upstream 12bp 5045 chr22 29141963 29141963 1 + G T SARC 29141963 + 29141943 29141983 41 TCGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAA TCGCAGAAGCTGAAAGTGAATCTGCCATGAAAGAGATTGAA Direct Loss 0.94004202339552 0 NA NA prediction 0.88008404679104 Functional Loss - HSCB ENSG00000100209 CDS Human protein_coding chr22:29141963 chr22:29141963 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_5181 0 0 1 0 1 HSCB chr22:29141996 5'GT 29141996 Upstream 34bp 5046 chr19 38795571 38795571 1 + G A SKCM 38795571 + 38795551 38795591 41 AAGAAGGAGAAGGGCAAGAAGGAGAAGGGCAAGAAGAAGGA AAGAAGGAGAAGGGCAAGAAAGAGAAGGGCAAGAAGAAGGA Direct Loss 0.940028624881896 0 NA NA prediction 0.880057249763792 Functional Loss - C19orf33 ENSG00000167644 CDS Human other chr19:38795571 chr19:38795571 synonymous SNV . 0 21 hm7G_associated_SNPs_5186 0 0 0 0 1 C19orf33 chr19:38795485 3'AG 38795485 Downstream 87bp 5047 chr16 71411610 71411610 1 + G A OV 71411610 + 71411590 71411630 41 CGAAGAGAACTTCCTTCTGTGCTTCAGGCAGCACGTGGGCT CGAAGAGAACTTCCTTCTGTACTTCAGGCAGCACGTGGGCT Direct Loss 0.940027747007238 0 NA NA prediction 0.880055494014477 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71411610 chr16:71411610 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_5187 0 0 0 0 2 CALB2 chr16:71411570 3'AG 71411570 Downstream 41bp 5048 chr16 71411610 71411610 1 + G A OV 71411610 + 71411590 71411630 41 CGAAGAGAACTTCCTTCTGTGCTTCAGGCAGCACGTGGGCT CGAAGAGAACTTCCTTCTGTACTTCAGGCAGCACGTGGGCT Direct Loss 0.940027747007238 0 NA NA prediction 0.880055494014477 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71411610 chr16:71411610 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_5187 0 0 0 0 2 CALB2 chr16:71411650 5'GT 71411650 Upstream 41bp 5049 chr3 49059908 49059908 1 + G A BLCA 49059908 + 49059888 49059928 41 TACAACAGCCGCGGCTTCATGATAAACGGAAACCGCGTGCT TACAACAGCCGCGGCTTCATAATAAACGGAAACCGCGTGCT Direct Loss 0.940027363321609 0 NA NA prediction 0.880054726643217 Functional Loss - NDUFAF3 ENSG00000178057 CDS Human protein_coding chr3:49059908 chr3:49059908 nonsynonymous SNV 0.814 0 21 hm7G_associated_SNPs_5188 0 0 1 0 1 NDUFAF3 chr3:49059971 5'GT 49059971 Upstream 64bp 5050 chr5 68411962 68411962 1 + G T SARC 68411962 + 68411942 68411982 41 ACAGACCAGCTTCGGGCTATGAACAAAGCAGCACACCAGGA ACAGACCAGCTTCGGGCTATTAACAAAGCAGCACACCAGGA Direct Loss 0.940023839162322 0 NA NA prediction 0.880047678324644 Functional Loss - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68411962 chr5:68411962 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5190 0 0 1 0 1 SLC30A5 chr5:68412041 5'GT 68412041 Upstream 80bp 5051 chr17 38031608 38031608 1 + G T SARC 38031608 + 38031588 38031628 41 CATTTTGTGGACCACAGTTTGCAAGTAGTACGTCTGGATAG CATTTTGTGGACCACAGTTTTCAAGTAGTACGTCTGGATAG Direct Loss 0.9400195149631 0 NA NA prediction 0.8800390299262 Functional Loss - ZPBP2 ENSG00000186075 CDS Human protein_coding chr17:38031608 chr17:38031608 nonsynonymous SNV 0.985 0 21 hm7G_associated_SNPs_5192 0 0 0 0 1 ZPBP2 chr17:38031687 5'GT 38031687 Upstream 80bp 5052 chr17 37786228 37786228 1 + G A UCEC 37786228 + 37786208 37786248 41 GGCACTTCCCCTGGCAGAGAGCCTCAGGAGAGGGGCACCAT GGCACTTCCCCTGGCAGAGAACCTCAGGAGAGGGGCACCAT Direct Loss 0.940009764197262 0 NA NA prediction 0.880019528394525 Functional Loss - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37786228 chr17:37786228 nonsynonymous SNV 0.964 0 21 hm7G_associated_SNPs_5194 0 0 0 0 2 PPP1R1B chr17:37786225 3'AG 37786225 Downstream 4bp 5053 chr17 37786228 37786228 1 + G A UCEC 37786228 + 37786208 37786248 41 GGCACTTCCCCTGGCAGAGAGCCTCAGGAGAGGGGCACCAT GGCACTTCCCCTGGCAGAGAACCTCAGGAGAGGGGCACCAT Direct Loss 0.940009764197262 0 NA NA prediction 0.880019528394525 Functional Loss - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37786228 chr17:37786228 nonsynonymous SNV 0.964 0 21 hm7G_associated_SNPs_5194 0 0 0 0 2 PPP1R1B chr17:37786300 5'GT 37786300 Upstream 73bp 5054 chr3 50324542 50324542 1 + G A CESC 50324542 + 50324522 50324562 41 CATCCTGGCACACACGCTCCGCACGCAGGAGGAGACACTAC CATCCTGGCACACACGCTCCACACGCAGGAGGAGACACTAC Direct Loss 0.939980452916487 0 NA NA prediction 0.879960905832973 Functional Loss - LSMEM2 ENSG00000179564 CDS Human protein_coding chr3:50324542 chr3:50324542 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_5197 0 0 0 0 1 LSMEM2 chr3:50324500 3'AG 50324500 Downstream 43bp 5055 chr5 179151724 179151724 1 + G T UCEC 179151724 + 179151704 179151744 41 CGGATGTGAAGGAAGAGGAAGAAGAGAAGGAAGAGGAAAAG CGGATGTGAAGGAAGAGGAATAAGAGAAGGAAGAGGAAAAG Direct Loss 0.939977726095418 0 NA NA prediction 0.879955452190835 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179151724 chr5:179151724 stopgain 0.998 0 21 hm7G_associated_SNPs_5198 0 0 1 0 2 CANX chr5:179151658 3'AG 179151658 Downstream 67bp 5056 chr5 179151724 179151724 1 + G T UCEC 179151724 + 179151704 179151744 41 CGGATGTGAAGGAAGAGGAAGAAGAGAAGGAAGAGGAAAAG CGGATGTGAAGGAAGAGGAATAAGAGAAGGAAGAGGAAAAG Direct Loss 0.939977726095418 0 NA NA prediction 0.879955452190835 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179151724 chr5:179151724 stopgain 0.998 0 21 hm7G_associated_SNPs_5198 0 0 1 0 2 CANX chr5:179151784 5'GT 179151784 Upstream 61bp 5057 chr19 50189926 50189926 1 + G A BLCA 50189926 + 50189906 50189946 41 ATGGAGGACTACCTGACCGTGAAGACGGGCGAGGAGATCTT ATGGAGGACTACCTGACCGTAAAGACGGGCGAGGAGATCTT Direct Loss 0.939975762006664 0 NA NA prediction 0.879951524013327 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189926 chr19:50189926 synonymous SNV . 0 21 hm7G_associated_SNPs_5199 0 0 1 0 2 PRMT1 chr19:50189862 3'AG 50189862 Downstream 65bp 5058 chr19 50189926 50189926 1 + G A BLCA 50189926 + 50189906 50189946 41 ATGGAGGACTACCTGACCGTGAAGACGGGCGAGGAGATCTT ATGGAGGACTACCTGACCGTAAAGACGGGCGAGGAGATCTT Direct Loss 0.939975762006664 0 NA NA prediction 0.879951524013327 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50189926 chr19:50189926 synonymous SNV . 0 21 hm7G_associated_SNPs_5199 0 0 1 0 2 PRMT1 chr19:50189983 5'GT 50189983 Upstream 58bp 5059 chr4 184366773 184366773 1 + G A UCEC 184366773 + 184366753 184366793 41 CAACCTATACAACAAGAGATGAACTGGTTGCCAAGGTGAAG CAACCTATACAACAAGAGATAAACTGGTTGCCAAGGTGAAG Direct Loss 0.939972443687742 0 NA NA prediction 0.879944887375483 Functional Loss - CDKN2AIP ENSG00000168564 CDS Human protein_coding chr4:184366773 chr4:184366773 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5200 0 0 1 0 3 CDKN2AIP chr4:184366688 3'AG 184366688 Downstream 86bp 5060 chr4 184366773 184366773 1 + G A UCEC 184366773 + 184366753 184366793 41 CAACCTATACAACAAGAGATGAACTGGTTGCCAAGGTGAAG CAACCTATACAACAAGAGATAAACTGGTTGCCAAGGTGAAG Direct Loss 0.939972443687742 0 NA NA prediction 0.879944887375483 Functional Loss - CDKN2AIP ENSG00000168564 CDS Human protein_coding chr4:184366773 chr4:184366773 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5200 0 0 1 0 3 CDKN2AIP chr4:184366787 5'GT 184366787 Upstream 15bp 5061 chr4 184366773 184366773 1 + G A UCEC 184366773 + 184366753 184366793 41 CAACCTATACAACAAGAGATGAACTGGTTGCCAAGGTGAAG CAACCTATACAACAAGAGATAAACTGGTTGCCAAGGTGAAG Direct Loss 0.939972443687742 0 NA NA prediction 0.879944887375483 Functional Loss - CDKN2AIP ENSG00000168564 CDS Human protein_coding chr4:184366773 chr4:184366773 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5200 0 0 1 0 3 CDKN2AIP chr4:184366818 5'GT 184366818 Upstream 46bp 5062 chr3 169555363 169555363 1 + G T UCEC 169555363 + 169555343 169555383 41 AAGGAAAGACCTCTCCAAAAGATAAGAAAGGAAAGAAGGAT AAGGAAAGACCTCTCCAAAATATAAGAAAGGAAAGAAGGAT Direct Loss 0.939970917907303 0 NA NA prediction 0.879941835814605 Functional Loss - LRRIQ4 ENSG00000188306 CDS Human protein_coding chr3:169555363 chr3:169555363 nonsynonymous SNV 0.855 2 21 hm7G_associated_SNPs_5201 0 0 0 0 1 LRRIQ4 chr3:169555267 3'AG 169555267 Downstream 97bp 5063 chr18 61160209 61160209 1 + G A LAML 61160209 + 61160189 61160229 41 ACTTTGAGAACATTTTAGCTGACAACAGTGTGAACGACCAG ACTTTGAGAACATTTTAGCTAACAACAGTGTGAACGACCAG Direct Loss 0.939947931470357 0 NA NA prediction 0.879895862940713 Functional Loss - SERPINB5 ENSG00000206075 CDS Human protein_coding chr18:61160209 chr18:61160209 nonsynonymous SNV 0.556 0 21 hm7G_associated_SNPs_5203 0 0 0 0 1 SERPINB5 chr18:61160186 3'AG 61160186 Downstream 24bp 5064 chr8 66605960 66605960 1 + G T SARC 66605960 + 66605940 66605980 41 TTGCTGATGTTGGATGGGTAGCCAAAGAAGAAGGAGAGTGT TTGCTGATGTTGGATGGGTATCCAAAGAAGAAGGAGAGTGT Direct Loss 0.939947507388339 0 NA NA prediction 0.879895014776678 Functional Loss - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66605960 chr8:66605960 nonsynonymous SNV 0.983 3 21 hm7G_associated_SNPs_5204 0 0 1 0 2 MTFR1 chr8:66605879 3'AG 66605879 Downstream 82bp 5065 chr8 66605960 66605960 1 + G T SARC 66605960 + 66605940 66605980 41 TTGCTGATGTTGGATGGGTAGCCAAAGAAGAAGGAGAGTGT TTGCTGATGTTGGATGGGTATCCAAAGAAGAAGGAGAGTGT Direct Loss 0.939947507388339 0 NA NA prediction 0.879895014776678 Functional Loss - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66605960 chr8:66605960 nonsynonymous SNV 0.983 3 21 hm7G_associated_SNPs_5204 0 0 1 0 2 MTFR1 chr8:66605994 5'GT 66605994 Upstream 35bp 5066 chr12 21608979 21608979 1 + G A LUAD 21608979 + 21608959 21608999 41 AAGCAGATAATGTAGGAAGTGCATTGGGACCAGATTGGCAT AAGCAGATAATGTAGGAAGTACATTGGGACCAGATTGGCAT Direct Loss 0.939938592393158 0 NA NA prediction 0.879877184786317 Functional Loss - PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21608979 chr12:21608979 nonsynonymous SNV 0.044 4 21 hm7G_associated_SNPs_5206 0 0 1 0 2 PYROXD1 chr12:21608929 3'AG 21608929 Downstream 51bp 5067 chr12 21608979 21608979 1 + G A LUAD 21608979 + 21608959 21608999 41 AAGCAGATAATGTAGGAAGTGCATTGGGACCAGATTGGCAT AAGCAGATAATGTAGGAAGTACATTGGGACCAGATTGGCAT Direct Loss 0.939938592393158 0 NA NA prediction 0.879877184786317 Functional Loss - PYROXD1 ENSG00000121350 CDS Human protein_coding chr12:21608979 chr12:21608979 nonsynonymous SNV 0.044 4 21 hm7G_associated_SNPs_5206 0 0 1 0 2 PYROXD1 chr12:21609029 5'GT 21609029 Upstream 51bp 5068 chr3 118909895 118909895 1 + G A SKCM 118909895 + 118909875 118909915 41 ACAACAGCCCTCCAAACAATGATGACCAGTGGAAAAACAAT ACAACAGCCCTCCAAACAATAATGACCAGTGGAAAAACAAT Direct Loss 0.939910349607289 0 NA NA prediction 0.879820699214579 Functional Loss - UPK1B ENSG00000114638 CDS Human protein_coding chr3:118909895 chr3:118909895 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_5208 0 0 0 0 3 UPK1B chr3:118909829 3'AG 118909829 Downstream 67bp 5069 chr3 118909895 118909895 1 + G A SKCM 118909895 + 118909875 118909915 41 ACAACAGCCCTCCAAACAATGATGACCAGTGGAAAAACAAT ACAACAGCCCTCCAAACAATAATGACCAGTGGAAAAACAAT Direct Loss 0.939910349607289 0 NA NA prediction 0.879820699214579 Functional Loss - UPK1B ENSG00000114638 CDS Human protein_coding chr3:118909895 chr3:118909895 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_5208 0 0 0 0 3 UPK1B chr3:118909853 3'AG 118909853 Downstream 43bp 5070 chr3 118909895 118909895 1 + G A SKCM 118909895 + 118909875 118909915 41 ACAACAGCCCTCCAAACAATGATGACCAGTGGAAAAACAAT ACAACAGCCCTCCAAACAATAATGACCAGTGGAAAAACAAT Direct Loss 0.939910349607289 0 NA NA prediction 0.879820699214579 Functional Loss - UPK1B ENSG00000114638 CDS Human protein_coding chr3:118909895 chr3:118909895 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_5208 0 0 0 0 3 UPK1B chr3:118909951 5'GT 118909951 Upstream 57bp 5071 chr17 41008364 41008364 1 + G T SARC 41008364 + 41008344 41008384 41 ACATTCCTAACACAGTGACTGTGGGGAACGGCGTGGGCTTC ACATTCCTAACACAGTGACTTTGGGGAACGGCGTGGGCTTC Direct Loss 0.939896779180126 0 NA NA prediction 0.879793558360252 Functional Loss - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41008364 chr17:41008364 nonsynonymous SNV 0.949 1 21 hm7G_associated_SNPs_5209 0 0 0 0 1 AOC3 chr17:41008292 3'AG 41008292 Downstream 73bp 5072 chr16 56602756 56602756 1 + G A LUSC 56602756 + 56602736 56602776 41 TCTCCTGACTCTTTCAGGCTGCTGTCCCTGCTGCCCCCCGG TCTCCTGACTCTTTCAGGCTACTGTCCCTGCTGCCCCCCGG Direct Loss 0.939895920792709 0 NA NA prediction 0.879791841585417 Functional Loss - MT4 ENSG00000102891 CDS Human protein_coding chr16:56602756 chr16:56602756 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5210 0 0 0 0 1 MT4 chr16:56602753 3'AG 56602753 Downstream 4bp 5073 chr16 67860932 67860932 1 + G A SKCM 67860932 + 67860912 67860952 41 TGCTGAAGGAGATGACAAATGCTGACAGTCAGAACGAGGGG TGCTGAAGGAGATGACAAATACTGACAGTCAGAACGAGGGG Direct Loss 0.939887387687616 0 NA NA prediction 0.879774775375232 Functional Loss - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67860932 chr16:67860932 nonsynonymous SNV 0.688 1 21 hm7G_associated_SNPs_5211 0 0 0 0 2 TSNAXIP1 chr16:67860866 3'AG 67860866 Downstream 67bp 5074 chr16 67860932 67860932 1 + G A SKCM 67860932 + 67860912 67860952 41 TGCTGAAGGAGATGACAAATGCTGACAGTCAGAACGAGGGG TGCTGAAGGAGATGACAAATACTGACAGTCAGAACGAGGGG Direct Loss 0.939887387687616 0 NA NA prediction 0.879774775375232 Functional Loss - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67860932 chr16:67860932 nonsynonymous SNV 0.688 1 21 hm7G_associated_SNPs_5211 0 0 0 0 2 TSNAXIP1 chr16:67860975 5'GT 67860975 Upstream 44bp 5075 chr15 67813876 67813876 1 + G T UCEC 67813876 + 67813856 67813896 41 CCACTGCTCCAAGGCTCCCTGGCAGGACCTGGCCCGGCAGA CCACTGCTCCAAGGCTCCCTTGCAGGACCTGGCCCGGCAGA Direct Loss 0.939882362261186 0 NA NA prediction 0.879764724522372 Functional Loss - C15orf61 ENSG00000189227 CDS Human protein_coding chr15:67813876 chr15:67813876 nonsynonymous SNV 0.948 0 21 hm7G_associated_SNPs_5212 0 0 1 0 1 C15orf61 chr15:67813932 5'GT 67813932 Upstream 57bp 5076 chrX 134987437 134987437 1 + G A BLCA 134987437 + 134987417 134987457 41 CCATCGCTCACAATATCCGTGAAGAGAGGATGGAAAATGGC CCATCGCTCACAATATCCGTAAAGAGAGGATGGAAAATGGC Direct Loss 0.939880949220463 0 NA NA prediction 0.879761898440926 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134987437 chrX:134987437 nonsynonymous SNV 0.364 3 21 hm7G_associated_SNPs_5213 0 0 0 0 1 SAGE1 chrX:134987411 3'AG 134987411 Downstream 27bp 5077 chr1 179057054 179057054 1 + G A OV 179057054 + 179057034 179057074 41 TATCCCGTGCAGGAGCAGCTGATGAGCCAGATCCGGGAGAC TATCCCGTGCAGGAGCAGCTAATGAGCCAGATCCGGGAGAC Direct Loss 0.939877072712944 0 NA NA prediction 0.879754145425887 Functional Loss - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179057054 chr1:179057054 synonymous SNV . 0 21 hm7G_associated_SNPs_5215 0 0 1 0 1 TOR3A chr1:179057046 3'AG 179057046 Downstream 9bp 5078 chr7 150269582 150269582 1 + G A SKCM 150269582 + 150269562 150269602 41 AGAAGATCCTGAAAATGTTTGGAGAGAGGGCTAGAAGTTTC AGAAGATCCTGAAAATGTTTAGAGAGAGGGCTAGAAGTTTC Direct Loss 0.939874332933771 0 NA NA prediction 0.879748665867542 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150269582 chr7:150269582 nonsynonymous SNV 0.400 4 21 hm7G_associated_SNPs_5216 0 0 0 0 1 GIMAP4 chr7:150269567 3'AG 150269567 Downstream 16bp 5079 chr12 6497633 6497633 1 + G A UCEC 6497633 + 6497613 6497653 41 CCTTGCCACCGTCTTCTCCTGCATCTGGAAGAGCCACCCTT CCTTGCCACCGTCTTCTCCTACATCTGGAAGAGCCACCCTT Direct Loss 0.939874227672606 0 NA NA prediction 0.879748455345212 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6497633 chr12:6497633 nonsynonymous SNV 0.372 1 21 hm7G_associated_SNPs_5217 0 0 1 0 2 LTBR chr12:6497564 3'AG 6497564 Downstream 70bp 5080 chr12 6497633 6497633 1 + G A UCEC 6497633 + 6497613 6497653 41 CCTTGCCACCGTCTTCTCCTGCATCTGGAAGAGCCACCCTT CCTTGCCACCGTCTTCTCCTACATCTGGAAGAGCCACCCTT Direct Loss 0.939874227672606 0 NA NA prediction 0.879748455345212 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6497633 chr12:6497633 nonsynonymous SNV 0.372 1 21 hm7G_associated_SNPs_5217 0 0 1 0 2 LTBR chr12:6497671 5'GT 6497671 Upstream 39bp 5081 chr4 88732579 88732579 1 + G T UCEC 88732579 + 88732559 88732599 41 GAAGAAGAAGAGGAGGAAGAGGAAGGAAATGAAAACGAAGA GAAGAAGAAGAGGAGGAAGATGAAGGAAATGAAAACGAAGA Direct Loss 0.939873767638868 0 NA NA prediction 0.879747535277736 Functional Loss - IBSP ENSG00000029559 CDS Human protein_coding chr4:88732579 chr4:88732579 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_5218 0 0 0 0 1 IBSP chr4:88732514 3'AG 88732514 Downstream 66bp 5082 chr2 99232694 99232694 1 + G A ESCA 99232694 + 99232674 99232714 41 ATCTCTAACAAGTATTTAGTGAAACGACAGAGCAGAGACTA ATCTCTAACAAGTATTTAGTAAAACGACAGAGCAGAGACTA Direct Loss 0.939872510888114 0 NA NA prediction 0.879745021776227 Functional Loss - UNC50 ENSG00000115446 CDS Human protein_coding chr2:99232694 chr2:99232694 synonymous SNV . 0 21 hm7G_associated_SNPs_5219 0 0 1 0 1 UNC50 chr2:99232670 3'AG 99232670 Downstream 25bp 5083 chr14 75180199 75180199 1 + G T UCEC 75180199 + 75180179 75180219 41 TGTTTCAAGGGGAAGCAAAAGAAAACAAGGAAGTATGCGAC TGTTTCAAGGGGAAGCAAAATAAAACAAGGAAGTATGCGAC Direct Loss 0.939869807186356 0 NA NA prediction 0.879739614372712 Functional Loss - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75180199 chr14:75180199 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5220 0 0 0 0 3 FCF1 chr14:75180188 3'AG 75180188 Downstream 12bp 5084 chr14 75180199 75180199 1 + G T UCEC 75180199 + 75180179 75180219 41 TGTTTCAAGGGGAAGCAAAAGAAAACAAGGAAGTATGCGAC TGTTTCAAGGGGAAGCAAAATAAAACAAGGAAGTATGCGAC Direct Loss 0.939869807186356 0 NA NA prediction 0.879739614372712 Functional Loss - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75180199 chr14:75180199 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5220 0 0 0 0 3 FCF1 chr14:75180210 5'GT 75180210 Upstream 12bp 5085 chr14 75180199 75180199 1 + G T UCEC 75180199 + 75180179 75180219 41 TGTTTCAAGGGGAAGCAAAAGAAAACAAGGAAGTATGCGAC TGTTTCAAGGGGAAGCAAAATAAAACAAGGAAGTATGCGAC Direct Loss 0.939869807186356 0 NA NA prediction 0.879739614372712 Functional Loss - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75180199 chr14:75180199 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5220 0 0 0 0 3 FCF1 chr14:75180255 5'GT 75180255 Upstream 57bp 5086 chr19 45572367 45572367 1 + G T UCEC 45572367 + 45572347 45572387 41 CAAGAAAAGATGATCCAGCAGGAGCATGAGCGGCAGGTGAA CAAGAAAAGATGATCCAGCATGAGCATGAGCGGCAGGTGAA Direct Loss 0.939869142567601 0 NA NA prediction 0.879738285135201 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45572367 chr19:45572367 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5221 0 0 1 1 2 CLASRP chr19:45572324 3'AG 45572324 Downstream 44bp 5087 chr19 45572367 45572367 1 + G T UCEC 45572367 + 45572347 45572387 41 CAAGAAAAGATGATCCAGCAGGAGCATGAGCGGCAGGTGAA CAAGAAAAGATGATCCAGCATGAGCATGAGCGGCAGGTGAA Direct Loss 0.939869142567601 0 NA NA prediction 0.879738285135201 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45572367 chr19:45572367 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5221 0 0 1 1 2 CLASRP chr19:45572382 5'GT 45572382 Upstream 16bp 5088 chr12 130845883 130845883 1 + G A SKCM 130845883 + 130845863 130845903 41 ACAAAGATTGCCCTACAGATGAACTGCAAGATGGGAGGAGA ACAAAGATTGCCCTACAGATAAACTGCAAGATGGGAGGAGA Direct Loss 0.939866422478457 0 NA NA prediction 0.879732844956914 Functional Loss - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130845883 chr12:130845883 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_5222 0 0 0 0 1 PIWIL1 chr12:130845925 5'GT 130845925 Upstream 43bp 5089 chr2 79255386 79255386 1 + G T KIRC 79255386 + 79255366 79255406 41 TGCAAAGTTACCCTATGTCTGCAAGTTCAAGGACTAGGGCA TGCAAAGTTACCCTATGTCTTCAAGTTCAAGGACTAGGGCA Direct Loss 0.939859579418041 0 NA NA prediction 0.879719158836081 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255386 chr2:79255386 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5224 0 0 0 0 1 REG3G chr2:79255335 3'AG 79255335 Downstream 52bp 5090 chr9 36204067 36204067 1 + G T SARC 36204067 + 36204047 36204087 41 TCTTCTCTCCCTTCAAAGATGCCAATTCTCGGAAGCAAGAA TCTTCTCTCCCTTCAAAGATTCCAATTCTCGGAAGCAAGAA Direct Loss 0.939859183533206 0 NA NA prediction 0.879718367066412 Functional Loss - CLTA ENSG00000122705 CDS Human protein_coding chr9:36204067 chr9:36204067 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_5225 0 0 1 0 1 CLTA chr9:36204065 3'AG 36204065 Downstream 3bp 5091 chr11 65618239 65618239 1 + G A SKCM 65618239 + 65618219 65618259 41 CAGCTGAGTGTCCGGGGGAAGAACAGGAAGGAGCTCCTCGG CAGCTGAGTGTCCGGGGGAAAAACAGGAAGGAGCTCCTCGG Direct Loss 0.939856993880232 0 NA NA prediction 0.879713987760465 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65618239 chr11:65618239 synonymous SNV . 0 21 hm7G_associated_SNPs_5226 0 0 0 0 2 SNX32 chr11:65618222 3'AG 65618222 Downstream 18bp 5092 chr11 65618239 65618239 1 + G A SKCM 65618239 + 65618219 65618259 41 CAGCTGAGTGTCCGGGGGAAGAACAGGAAGGAGCTCCTCGG CAGCTGAGTGTCCGGGGGAAAAACAGGAAGGAGCTCCTCGG Direct Loss 0.939856993880232 0 NA NA prediction 0.879713987760465 Functional Loss - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65618239 chr11:65618239 synonymous SNV . 0 21 hm7G_associated_SNPs_5226 0 0 0 0 2 SNX32 chr11:65618326 5'GT 65618326 Upstream 88bp 5093 chr12 6309730 6309730 1 + G T OV 6309730 + 6309710 6309750 41 CGGATTTAACTTCATCTTCTGGGTGAGTGAGCGCGACTGCC CGGATTTAACTTCATCTTCTTGGTGAGTGAGCGCGACTGCC Direct Loss 0.939845975648412 0 NA NA prediction 0.879691951296825 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6309730 chr12:6309730 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_5227 0 0 0 0 1 CD9 chr12:6309731 5'GT 6309731 Upstream 2bp 5094 chr7 123296224 123296224 1 + G T LUSC 123296224 + 123296204 123296244 41 ACATTCAGCAGAGAGGCACTGATGGCCTATTGGGAAAAGGA ACATTCAGCAGAGAGGCACTTATGGCCTATTGGGAAAAGGA Direct Loss 0.939842331220082 0 NA NA prediction 0.879684662440164 Functional Loss - LMOD2 ENSG00000170807 CDS Human protein_coding chr7:123296224 chr7:123296224 synonymous SNV . 0 21 hm7G_associated_SNPs_5228 0 0 0 0 1 LMOD2 chr7:123296290 5'GT 123296290 Upstream 67bp 5095 chr11 111753281 111753281 1 + G A BRCA 111753281 + 111753261 111753301 41 ACTGGAACCAGGAAAGATATGACCTGAGGAATATCGTGCAG ACTGGAACCAGGAAAGATATAACCTGAGGAATATCGTGCAG Direct Loss 0.939838355796525 0 NA NA prediction 0.879676711593049 Functional Loss - C11orf1 ENSG00000137720 CDS Human protein_coding chr11:111753281 chr11:111753281 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5230 0 0 1 0 1 C11orf1 chr11:111753322 5'GT 111753322 Upstream 42bp 5096 chr16 29830888 29830888 1 + G A UCEC 29830888 + 29830868 29830908 41 TTCTCCAGGAAGCTCAGCCCGGAGCCAGAAACGGGAGGCCC TTCTCCAGGAAGCTCAGCCCAGAGCCAGAAACGGGAGGCCC Direct Loss 0.939833473028096 0 NA NA prediction 0.879666946056193 Functional Loss - PAGR1 ENSG00000185928;ENSG00000263136 CDS Human other chr16:29830888 chr16:29830888 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5231 0 0 1 0 1 PAGR1 chr16:29830876 3'AG 29830876 Downstream 13bp 5097 chr2 73453006 73453006 1 + G T LUSC 73453006 + 73452986 73453026 41 TGACCTCAGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAA TGACCTCAGAAGAGGAAGAGTAAGAGGAGGAGGAGGAGGAA Direct Loss 0.93983320312071 0 NA NA prediction 0.879666406241421 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73453006 chr2:73453006 stopgain 0.944 0 21 hm7G_associated_SNPs_5232 0 0 1 0 1 SMYD5 chr2:73452924 3'AG 73452924 Downstream 83bp 5098 chr11 124016027 124016027 1 + G A SKCM 124016027 + 124016007 124016047 41 GACTTGAAGTGTGAATGGGAGCTTCTGGAAAGGAAGGCCGT GACTTGAAGTGTGAATGGGAACTTCTGGAAAGGAAGGCCGT Direct Loss 0.939823389138237 0 NA NA prediction 0.879646778276475 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124016027 chr11:124016027 synonymous SNV . 0 21 hm7G_associated_SNPs_5233 0 0 0 0 2 VWA5A chr11:124015944 3'AG 124015944 Downstream 84bp 5099 chr11 124016027 124016027 1 + G A SKCM 124016027 + 124016007 124016047 41 GACTTGAAGTGTGAATGGGAGCTTCTGGAAAGGAAGGCCGT GACTTGAAGTGTGAATGGGAACTTCTGGAAAGGAAGGCCGT Direct Loss 0.939823389138237 0 NA NA prediction 0.879646778276475 Functional Loss - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124016027 chr11:124016027 synonymous SNV . 0 21 hm7G_associated_SNPs_5233 0 0 0 0 2 VWA5A chr11:124016070 5'GT 124016070 Upstream 44bp 5100 chr8 19190596 19190596 1 + G C BLCA 19190596 + 19190576 19190616 41 ATTGCTGAGAGGGCCCGGCTGAAAGCAGAACAGGAGGCAGA ATTGCTGAGAGGGCCCGGCTCAAAGCAGAACAGGAGGCAGA Direct Loss 0.939822321602206 0 NA NA prediction 0.879644643204412 Functional Loss - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19190596 chr8:19190596 synonymous SNV . 0 21 hm7G_associated_SNPs_5234 0 0 0 0 1 SH2D4A chr8:19190625 5'GT 19190625 Upstream 30bp 5101 chr6 160229840 160229840 1 + G A SKCM 160229840 + 160229820 160229860 41 ACATCTGGACGGTGCTGAAAGATGAGGGGGTGAGTTCTCAC ACATCTGGACGGTGCTGAAAAATGAGGGGGTGAGTTCTCAC Direct Loss 0.939819627875372 0 NA NA prediction 0.879639255750744 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160229840 chr6:160229840 nonsynonymous SNV 0.711 0 21 hm7G_associated_SNPs_5236 0 0 0 0 2 PNLDC1 chr6:160229772 3'AG 160229772 Downstream 69bp 5102 chr6 160229840 160229840 1 + G A SKCM 160229840 + 160229820 160229860 41 ACATCTGGACGGTGCTGAAAGATGAGGGGGTGAGTTCTCAC ACATCTGGACGGTGCTGAAAAATGAGGGGGTGAGTTCTCAC Direct Loss 0.939819627875372 0 NA NA prediction 0.879639255750744 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160229840 chr6:160229840 nonsynonymous SNV 0.711 0 21 hm7G_associated_SNPs_5236 0 0 0 0 2 PNLDC1 chr6:160229848 5'GT 160229848 Upstream 9bp 5103 chr17 31258670 31258670 1 + G A SKCM 31258670 + 31258650 31258690 41 GAGACCTGCTGCAGCGCTATGATTCTAAGTGAGTGAGCCTA GAGACCTGCTGCAGCGCTATAATTCTAAGTGAGTGAGCCTA Direct Loss 0.939817835108612 0 NA NA prediction 0.879635670217223 Functional Loss - TMEM98 ENSG00000006042 CDS Human protein_coding chr17:31258670 chr17:31258670 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5237 0 0 1 0 1 TMEM98 chr17:31258677 5'GT 31258677 Upstream 8bp 5104 chr11 64138829 64138829 1 + G A LUSC 64138829 + 64138809 64138849 41 CCCCTGGCCAAGCGGCGGAAGCAGAAGCTGCGGAGCGCCAC CCCCTGGCCAAGCGGCGGAAACAGAAGCTGCGGAGCGCCAC Direct Loss 0.939816249689616 0 NA NA prediction 0.879632499379233 Functional Loss - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64138829 chr11:64138829 synonymous SNV . 0 21 hm7G_associated_SNPs_5238 0 0 0 0 1 RPS6KA4 chr11:64138755 3'AG 64138755 Downstream 75bp 5105 chr19 19206931 19206931 1 + G T LIHC 19206931 + 19206911 19206951 41 CTGCCATTCCGAGCAGGCCTGGTATGGGTAATGGTGTGAAG CTGCCATTCCGAGCAGGCCTTGTATGGGTAATGGTGTGAAG Direct Loss 0.939809663122545 0 NA NA prediction 0.87961932624509 Functional Loss - SLC25A42 ENSG00000181035 UTR5 Human protein_coding chr19:19206931 chr19:19206931 . . 0 21 hm7G_associated_SNPs_5239 0 0 1 0 1 SLC25A42 chr19:19206900 3'AG 19206900 Downstream 32bp 5106 chr7 128366920 128366920 1 + G A UCEC 128366920 + 128366900 128366940 41 GGTGGAGACCAACAAGAACAGCTCAGGTAAGGGAGGGCACA GGTGGAGACCAACAAGAACAACTCAGGTAAGGGAGGGCACA Direct Loss 0.939792567052676 0 NA NA prediction 0.879585134105353 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128366920 chr7:128366920 nonsynonymous SNV 0.891 0 21 hm7G_associated_SNPs_5243 0 0 0 2 2 FAM71F1 chr7:128366882 3'AG 128366882 Downstream 39bp 5107 chr7 128366920 128366920 1 + G A UCEC 128366920 + 128366900 128366940 41 GGTGGAGACCAACAAGAACAGCTCAGGTAAGGGAGGGCACA GGTGGAGACCAACAAGAACAACTCAGGTAAGGGAGGGCACA Direct Loss 0.939792567052676 0 NA NA prediction 0.879585134105353 Functional Loss - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128366920 chr7:128366920 nonsynonymous SNV 0.891 0 21 hm7G_associated_SNPs_5243 0 0 0 2 2 FAM71F1 chr7:128366888 3'AG 128366888 Downstream 33bp 5108 chr1 28146214 28146214 1 + G A SARC 28146214 + 28146194 28146234 41 TGCACGTCGAAAGAGCCACTGAACAGTTACAGCGAGCTGCT TGCACGTCGAAAGAGCCACTAAACAGTTACAGCGAGCTGCT Direct Loss 0.939785063613638 0 NA NA prediction 0.879570127227275 Functional Loss - STX12 ENSG00000117758 CDS Human protein_coding chr1:28146214 chr1:28146214 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5244 0 0 0 0 2 STX12 chr1:28146161 3'AG 28146161 Downstream 54bp 5109 chr1 28146214 28146214 1 + G A SARC 28146214 + 28146194 28146234 41 TGCACGTCGAAAGAGCCACTGAACAGTTACAGCGAGCTGCT TGCACGTCGAAAGAGCCACTAAACAGTTACAGCGAGCTGCT Direct Loss 0.939785063613638 0 NA NA prediction 0.879570127227275 Functional Loss - STX12 ENSG00000117758 CDS Human protein_coding chr1:28146214 chr1:28146214 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5244 0 0 0 0 2 STX12 chr1:28146243 5'GT 28146243 Upstream 30bp 5110 chr11 112103951 112103951 1 + G T LIHC 112103951 + 112103931 112103971 41 GTGCCATACTTTGCAGATGTGGTGAGGTGGGTGGCACTGTA GTGCCATACTTTGCAGATGTTGTGAGGTGGGTGGCACTGTA Direct Loss 0.93978058596375 0 NA NA prediction 0.8795611719275 Functional Loss - PTS ENSG00000150787 CDS Human protein_coding chr11:112103951 chr11:112103951 synonymous SNV . 0 21 hm7G_associated_SNPs_5246 0 0 1 3 2 PTS chr11:112103886 3'AG 112103886 Downstream 66bp 5111 chr11 112103951 112103951 1 + G T LIHC 112103951 + 112103931 112103971 41 GTGCCATACTTTGCAGATGTGGTGAGGTGGGTGGCACTGTA GTGCCATACTTTGCAGATGTTGTGAGGTGGGTGGCACTGTA Direct Loss 0.93978058596375 0 NA NA prediction 0.8795611719275 Functional Loss - PTS ENSG00000150787 CDS Human protein_coding chr11:112103951 chr11:112103951 synonymous SNV . 0 21 hm7G_associated_SNPs_5246 0 0 1 3 2 PTS chr11:112103956 5'GT 112103956 Upstream 6bp 5112 chr1 171303868 171303868 1 + G T SARC 171303868 + 171303848 171303888 41 TCCATCTTATCAGGCACAGAGCTCCAAGCACGATGGGTCAC TCCATCTTATCAGGCACAGATCTCCAAGCACGATGGGTCAC Direct Loss 0.939780582158867 0 NA NA prediction 0.879561164317735 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171303868 chr1:171303868 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_5247 0 0 1 0 1 FMO4 chr1:171303902 5'GT 171303902 Upstream 35bp 5113 chr1 197887072 197887072 1 + G T PRAD 197887072 + 197887052 197887092 41 CATGGAGGAGATGGAGCGCAGATCCAAGACTGAGGCCCGTC CATGGAGGAGATGGAGCGCATATCCAAGACTGAGGCCCGTC Direct Loss 0.939768089165244 0 NA NA prediction 0.879536178330488 Functional Loss - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197887072 chr1:197887072 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5248 0 0 0 1 1 LHX9 chr1:197887009 3'AG 197887009 Downstream 64bp 5114 chr20 39802951 39802951 1 + G A UCEC 39802951 + 39802931 39802971 41 TTTTGACAGTCGAGAACGAAGGTGAGGAAGATGGAGGGGTG TTTTGACAGTCGAGAACGAAAGTGAGGAAGATGGAGGGGTG Direct Loss 0.939759437437758 0 NA NA prediction 0.879518874875517 Functional Loss - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39802951 chr20:39802951 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_5249 0 0 1 0 1 PLCG1 chr20:39802951 5'GT 39802951 Upstream 1bp 5115 chr8 144464066 144464066 1 + G C CESC 144464066 + 144464046 144464086 41 GCGGAGGTGGTGACGGAGCTGAAGGCTGCGGGAGAGGCGGG GCGGAGGTGGTGACGGAGCTCAAGGCTGCGGGAGAGGCGGG Direct Loss 0.939750055957967 0 NA NA prediction 0.879500111915935 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144464066 chr8:144464066 synonymous SNV . 0 21 hm7G_associated_SNPs_5251 0 0 1 0 2 RHPN1 chr8:144463977 3'AG 144463977 Downstream 90bp 5116 chr8 144464066 144464066 1 + G C CESC 144464066 + 144464046 144464086 41 GCGGAGGTGGTGACGGAGCTGAAGGCTGCGGGAGAGGCGGG GCGGAGGTGGTGACGGAGCTCAAGGCTGCGGGAGAGGCGGG Direct Loss 0.939750055957967 0 NA NA prediction 0.879500111915935 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144464066 chr8:144464066 synonymous SNV . 0 21 hm7G_associated_SNPs_5251 0 0 1 0 2 RHPN1 chr8:144464138 5'GT 144464138 Upstream 73bp 5117 chr15 42820509 42820509 1 + G A LUAD 42820509 + 42820489 42820529 41 ATAAGACAACATGGGGAGATGGTGGAGAAAACTCACCTTGC ATAAGACAACATGGGGAGATAGTGGAGAAAACTCACCTTGC Direct Loss 0.939736987548947 0 NA NA prediction 0.879473975097895 Functional Loss - SNAP23 ENSG00000092531 CDS Human protein_coding chr15:42820509 chr15:42820509 nonsynonymous SNV 0.814 0 21 hm7G_associated_SNPs_5252 0 0 1 0 1 SNAP23 chr15:42820460 3'AG 42820460 Downstream 50bp 5118 chr1 44442008 44442008 1 + G A STAD 44442008 + 44441988 44442028 41 CCGGCTCCTCCATCATTGGTGGAGGAGTGAAGGCCCCCAGG CCGGCTCCTCCATCATTGGTAGAGGAGTGAAGGCCCCCAGG Direct Loss 0.939728976449127 0 NA NA prediction 0.879457952898254 Functional Loss - ATP6V0B ENSG00000117410 CDS Human protein_coding chr1:44442008 chr1:44442008 nonsynonymous SNV 0.989 2 21 hm7G_associated_SNPs_5253 0 0 1 0 2 ATP6V0B chr1:44441974 3'AG 44441974 Downstream 35bp 5119 chr1 44442008 44442008 1 + G A STAD 44442008 + 44441988 44442028 41 CCGGCTCCTCCATCATTGGTGGAGGAGTGAAGGCCCCCAGG CCGGCTCCTCCATCATTGGTAGAGGAGTGAAGGCCCCCAGG Direct Loss 0.939728976449127 0 NA NA prediction 0.879457952898254 Functional Loss - ATP6V0B ENSG00000117410 CDS Human protein_coding chr1:44442008 chr1:44442008 nonsynonymous SNV 0.989 2 21 hm7G_associated_SNPs_5253 0 0 1 0 2 ATP6V0B chr1:44442051 5'GT 44442051 Upstream 44bp 5120 chr2 233404460 233404460 1 + G A THYM 233404460 + 233404440 233404480 41 GCAGAGAGCTGAGGCACCATGCATGGGGGCCAGGGGCCGCT GCAGAGAGCTGAGGCACCATACATGGGGGCCAGGGGCCGCT Direct Loss 0.939727961034208 0 NA NA prediction 0.879455922068417 Functional Loss - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404460 chr2:233404460 nonsynonymous SNV 0.049 1 21 hm7G_associated_SNPs_5254 0 0 0 0 1 CHRNG chr2:233404512 5'GT 233404512 Upstream 53bp 5121 chr1 100756989 100756989 1 + G A BLCA 100756989 + 100756969 100757009 41 TTGTGAAGAAATCAGAAGATGAAGAAGACGCCGCTAAAGAT TTGTGAAGAAATCAGAAGATAAAGAAGACGCCGCTAAAGAT Direct Loss 0.939725368621722 0 NA NA prediction 0.879450737243444 Functional Loss - RTCA ENSG00000137996 CDS Human protein_coding chr1:100756989 chr1:100756989 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_5255 0 0 1 0 1 RTCA chr1:100756959 3'AG 100756959 Downstream 31bp 5122 chr5 140085213 140085213 1 + G A STAD 140085213 + 140085193 140085233 41 TCCAGGAGGAAAAGGCCAAAGCGTACAAGAAAGAGAAACAG TCCAGGAGGAAAAGGCCAAAACGTACAAGAAAGAGAAACAG Direct Loss 0.93970144788217 0 NA NA prediction 0.87940289576434 Functional Loss - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140085213 chr5:140085213 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_5259 0 0 1 0 1 ZMAT2 chr5:140085198 3'AG 140085198 Downstream 16bp 5123 chr17 46022009 46022009 1 + G A LAML 46022009 + 46021989 46022029 41 AAACCCTCTGCTCGCATGTTGCTGCTGAAGGGCTTCGGGAA AAACCCTCTGCTCGCATGTTACTGCTGAAGGGCTTCGGGAA Direct Loss 0.939689150559241 0 NA NA prediction 0.879378301118481 Functional Loss - PNPO ENSG00000108439 CDS Human protein_coding chr17:46022009 chr17:46022009 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_5261 0 0 1 0 2 PNPO chr17:46021982 3'AG 46021982 Downstream 28bp 5124 chr17 46022009 46022009 1 + G A LAML 46022009 + 46021989 46022029 41 AAACCCTCTGCTCGCATGTTGCTGCTGAAGGGCTTCGGGAA AAACCCTCTGCTCGCATGTTACTGCTGAAGGGCTTCGGGAA Direct Loss 0.939689150559241 0 NA NA prediction 0.879378301118481 Functional Loss - PNPO ENSG00000108439 CDS Human protein_coding chr17:46022009 chr17:46022009 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_5261 0 0 1 0 2 PNPO chr17:46022081 5'GT 46022081 Upstream 73bp 5125 chr6 123377080 123377080 1 + G A LUAD 123377080 + 123377060 123377100 41 CAAGAACACTGCTAGACCATGAATATGACGATGACAGCGAG CAAGAACACTGCTAGACCATAAATATGACGATGACAGCGAG Direct Loss 0.939673695463028 0 NA NA prediction 0.879347390926056 Functional Loss - CLVS2 ENSG00000146352 CDS Human protein_coding chr6:123377080 chr6:123377080 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5263 0 0 0 0 1 CLVS2 chr6:123377171 5'GT 123377171 Upstream 92bp 5126 chr22 18066228 18066228 1 + G A SKCM 18066228 + 18066208 18066248 41 TGCTTGCCGGGTGTGGGGCTGGGATGTGCCAGGTCGTGGTG TGCTTGCCGGGTGTGGGGCTAGGATGTGCCAGGTCGTGGTG Direct Loss 0.93967085490866 0 NA NA prediction 0.87934170981732 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18066228 chr22:18066228 nonsynonymous SNV 0.884 5 21 hm7G_associated_SNPs_5264 0 0 0 0 2 SLC25A18 chr22:18066182 3'AG 18066182 Downstream 47bp 5127 chr22 18066228 18066228 1 + G A SKCM 18066228 + 18066208 18066248 41 TGCTTGCCGGGTGTGGGGCTGGGATGTGCCAGGTCGTGGTG TGCTTGCCGGGTGTGGGGCTAGGATGTGCCAGGTCGTGGTG Direct Loss 0.93967085490866 0 NA NA prediction 0.87934170981732 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18066228 chr22:18066228 nonsynonymous SNV 0.884 5 21 hm7G_associated_SNPs_5264 0 0 0 0 2 SLC25A18 chr22:18066300 5'GT 18066300 Upstream 73bp 5128 chr1 160394991 160394991 1 + G A BLCA 160394991 + 160394971 160395011 41 GCCAAACAGTGGACATTGGTGAGCGAGGAGCCGGTGACCAA GCCAAACAGTGGACATTGGTAAGCGAGGAGCCGGTGACCAA Direct Loss 0.939661794823562 0 NA NA prediction 0.879323589647123 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160394991 chr1:160394991 synonymous SNV . 0 21 hm7G_associated_SNPs_5265 0 0 0 0 1 VANGL2 chr1:160394908 3'AG 160394908 Downstream 84bp 5129 chr6 43269968 43269968 1 + G C BLCA 43269968 + 43269948 43269988 41 AACTTCTCCTATTACGGCCTGAGTCTGGATGTGTCGGGGCT AACTTCTCCTATTACGGCCTCAGTCTGGATGTGTCGGGGCT Direct Loss 0.939658157908658 0 NA NA prediction 0.879316315817315 Functional Loss - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43269968 chr6:43269968 synonymous SNV . 0 21 hm7G_associated_SNPs_5266 0 0 0 0 1 SLC22A7 chr6:43269938 3'AG 43269938 Downstream 31bp 5130 chr22 29176964 29176964 1 + G T BLCA 29176964 + 29176944 29176984 41 TAAGAAAGAAAAGGATAACTGAAGCAGAGCTCTGTGCTGGT TAAGAAAGAAAAGGATAACTTAAGCAGAGCTCTGTGCTGGT Direct Loss 0.939643879743289 0 NA NA prediction 0.879287759486579 Functional Loss - CCDC117 ENSG00000159873 CDS Human protein_coding chr22:29176964 chr22:29176964 stopgain 0.999 0 21 hm7G_associated_SNPs_5270 0 0 1 0 1 CCDC117 chr22:29176936 3'AG 29176936 Downstream 29bp 5131 chr1 160106489 160106489 1 + G A UCEC 160106489 + 160106469 160106509 41 CATGAATGATCTGGAGGACAGCTATGGACAGGAGTGGGTGA CATGAATGATCTGGAGGACAACTATGGACAGGAGTGGGTGA Direct Loss 0.939641287454614 0 NA NA prediction 0.879282574909229 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106489 chr1:160106489 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_5271 0 0 0 0 2 ATP1A2 chr1:160106411 3'AG 160106411 Downstream 79bp 5132 chr1 160106489 160106489 1 + G A UCEC 160106489 + 160106469 160106509 41 CATGAATGATCTGGAGGACAGCTATGGACAGGAGTGGGTGA CATGAATGATCTGGAGGACAACTATGGACAGGAGTGGGTGA Direct Loss 0.939641287454614 0 NA NA prediction 0.879282574909229 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106489 chr1:160106489 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_5271 0 0 0 0 2 ATP1A2 chr1:160106505 5'GT 160106505 Upstream 17bp 5133 chr12 49949466 49949466 1 + G C LUSC 49949466 + 49949446 49949486 41 CGCTGGAGGAGAAGGAGACAGATGGGGAGCAGGGCCCCACG CGCTGGAGGAGAAGGAGACACATGGGGAGCAGGGCCCCACG Direct Loss 0.939636020192084 0 NA NA prediction 0.879272040384168 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49949466 chr12:49949466 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_5272 0 0 0 0 1 KCNH3 chr12:49949403 3'AG 49949403 Downstream 64bp 5134 chr20 32336776 32336776 1 + G A rs185795862 32336776 + 32336756 32336796 41 TCCCCACTGATCCAGACCCTGGTGCAGGGGAACATCTTGGT TCCCCACTGATCCAGACCCTAGTGCAGGGGAACATCTTGGT Direct Loss 0.939634593135715 0 NA NA prediction 0.879269186271429 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32336776 chr20:32336776 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_5273 0 0 0 1 1 ZNF341 chr20:32336729 3'AG 32336729 Downstream 48bp 5135 chr11 121060482 121060482 1 + G T LUSC 121060482 + 121060462 121060502 41 CTCTTTTGTAGGGCTGGACTGGTGTGAGGACAATGGAGGGT CTCTTTTGTAGGGCTGGACTTGTGTGAGGACAATGGAGGGT Direct Loss 0.939629074294768 0 NA NA prediction 0.879258148589536 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:121060482 chr11:121060482 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5274 0 0 0 0 1 TECTA chr11:121060473 3'AG 121060473 Downstream 10bp 5136 chr11 63586118 63586118 1 + G C UCEC 63586118 + 63586098 63586138 41 TGACCAAAAACCTGGACCCTGACCCAGGTGAAGGGGAGGCC TGACCAAAAACCTGGACCCTCACCCAGGTGAAGGGGAGGCC Direct Loss 0.939626725421178 0 NA NA prediction 0.879253450842356 Functional Loss - C11orf84 ENSG00000168005 CDS Human protein_coding chr11:63586118 chr11:63586118 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5275 0 0 0 0 1 C11orf84 chr11:63586124 5'GT 63586124 Upstream 7bp 5137 chr19 4258349 4258349 1 + G T SARC 4258349 + 4258329 4258369 41 CACGTGGACTTCGAGGCTATGCTGAGGCAGCACCGCCTGTC CACGTGGACTTCGAGGCTATTCTGAGGCAGCACCGCCTGTC Direct Loss 0.939625392219522 0 NA NA prediction 0.879250784439044 Functional Loss - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4258349 chr19:4258349 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_5276 0 0 0 0 1 CCDC94 chr19:4258420 5'GT 4258420 Upstream 72bp 5138 chr14 21552920 21552920 1 + G T LUSC 21552920 + 21552900 21552940 41 TCCTTTCTCCAGATAGATCTGAAGGAGCAGGGACAGCTCTT TCCTTTCTCCAGATAGATCTTAAGGAGCAGGGACAGCTCTT Direct Loss 0.939623987127715 0 NA NA prediction 0.87924797425543 Functional Loss - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21552920 chr14:21552920 synonymous SNV . 0 21 hm7G_associated_SNPs_5277 0 0 0 0 1 ARHGEF40 chr14:21552912 3'AG 21552912 Downstream 9bp 5139 chr9 131467653 131467653 1 + G C PAAD 131467653 + 131467633 131467673 41 GCCATCCAGAAAGAGCTGAAGATCAAGGAGGGGGTGGAGAA GCCATCCAGAAAGAGCTGAACATCAAGGAGGGGGTGGAGAA Direct Loss 0.939614423280583 0 NA NA prediction 0.879228846561167 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131467653 chr9:131467653 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_5278 0 0 1 0 1 PKN3 chr9:131467582 3'AG 131467582 Downstream 72bp 5140 chr3 119305413 119305413 1 + G T UCEC 119305413 + 119305393 119305433 41 CACCCTTGCAGTGGGGAAAAGGACTGATGGAGCTGCTACCA CACCCTTGCAGTGGGGAAAATGACTGATGGAGCTGCTACCA Direct Loss 0.939608486990284 0 NA NA prediction 0.879216973980568 Functional Loss - ADPRH ENSG00000144843 CDS Human protein_coding chr3:119305413 chr3:119305413 stopgain 0.999 1 21 hm7G_associated_SNPs_5279 0 0 0 0 1 ADPRH chr3:119305492 5'GT 119305492 Upstream 80bp 5141 chr1 116670258 116670258 1 + G A UCEC 116670258 + 116670238 116670278 41 TTCCCAAGAGAGAGTGGAGTGCATCAAGGTATCAGTGGGCG TTCCCAAGAGAGAGTGGAGTACATCAAGGTATCAGTGGGCG Direct Loss 0.939606676104221 0 NA NA prediction 0.879213352208442 Functional Loss - MAB21L3 ENSG00000173212 CDS Human protein_coding chr1:116670258 chr1:116670258 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_5280 0 0 0 0 1 MAB21L3 chr1:116670265 5'GT 116670265 Upstream 8bp 5142 chr8 21891651 21891651 1 + G A UCEC 21891651 + 21891631 21891671 41 CTAACCTGGGAGGAGGAGGAGGAAGAAGAAGGGGAGGAGGA CTAACCTGGGAGGAGGAGGAAGAAGAAGAAGGGGAGGAGGA Direct Loss 0.939594438045029 0 NA NA prediction 0.879188876090057 Functional Loss - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21891651 chr8:21891651 synonymous SNV . 0 21 hm7G_associated_SNPs_5282 0 0 0 0 1 NPM2 chr8:21891620 3'AG 21891620 Downstream 32bp 5143 chr11 18723194 18723194 1 + G T UCEC 18723194 + 18723174 18723214 41 AGCCACTGGCTCTTCGGACAGGTCTGGTGATGGCAGCGCTG AGCCACTGGCTCTTCGGACATGTCTGGTGATGGCAGCGCTG Direct Loss 0.939592875571601 0 NA NA prediction 0.879185751143202 Functional Loss - TMEM86A ENSG00000151117 CDS Human protein_coding chr11:18723194 chr11:18723194 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5283 0 0 0 0 1 TMEM86A chr11:18723120 3'AG 18723120 Downstream 75bp 5144 chr10 45430144 45430144 1 + G C BLCA 45430144 + 45430124 45430164 41 GGCCTGGCCTACTTCCTTCTGAGCAAGCGGAAGAAGAGGAA GGCCTGGCCTACTTCCTTCTCAGCAAGCGGAAGAAGAGGAA Direct Loss 0.939592718253745 0 NA NA prediction 0.879185436507489 Functional Loss - TMEM72 ENSG00000187783 CDS Human protein_coding chr10:45430144 chr10:45430144 synonymous SNV . 0 21 hm7G_associated_SNPs_5284 0 0 0 0 1 TMEM72 chr10:45430104 3'AG 45430104 Downstream 41bp 5145 chr7 89791267 89791267 1 + G A LUSC 89791267 + 89791247 89791287 41 ATGCCTGGATTGAGCATGATGTTTGGAGAATGGAGATTTAT ATGCCTGGATTGAGCATGATATTTGGAGAATGGAGATTTAT Direct Loss 0.939582868249533 0 NA NA prediction 0.879165736499067 Functional Loss - STEAP1 ENSG00000164647 CDS Human protein_coding chr7:89791267 chr7:89791267 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_5285 0 0 0 0 1 STEAP1 chr7:89791228 3'AG 89791228 Downstream 40bp 5146 chr17 33507639 33507639 1 + G A SKCM 33507639 + 33507619 33507659 41 ACTACATGTTTGAGAATCATGATCAGCTGCGGCAGGCGGCC ACTACATGTTTGAGAATCATAATCAGCTGCGGCAGGCGGCC Direct Loss 0.939561434819765 0 NA NA prediction 0.879122869639529 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33507639 chr17:33507639 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_5288 0 0 0 0 2 UNC45B chr17:33507578 3'AG 33507578 Downstream 62bp 5147 chr17 33507639 33507639 1 + G A SKCM 33507639 + 33507619 33507659 41 ACTACATGTTTGAGAATCATGATCAGCTGCGGCAGGCGGCC ACTACATGTTTGAGAATCATAATCAGCTGCGGCAGGCGGCC Direct Loss 0.939561434819765 0 NA NA prediction 0.879122869639529 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33507639 chr17:33507639 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_5288 0 0 0 0 2 UNC45B chr17:33507695 5'GT 33507695 Upstream 57bp 5148 chr9 97321399 97321399 1 - C T SKCM 97321399 - 97321379 97321419 41 CACAGCTCCGGCTCCTGTATGAATGCAATCCCGTGGCCTAC CACAGCTCCGGCTCCTGTATAAATGCAATCCCGTGGCCTAC Direct Loss 0.939550218651483 0 NA NA prediction 0.879100437302966 Functional Loss - FBP2 ENSG00000130957 CDS Human protein_coding chr9:97321399 chr9:97321399 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_5289 0 0 0 0 1 FBP2 chr9:97321414 3'AG 97321414 Downstream 16bp 5149 chr22 29153094 29153094 1 + G C BLCA 29153094 + 29153074 29153114 41 GAAGAAGCCAAGGAAATTTTGACAAAGATGAGATACTTTTC GAAGAAGCCAAGGAAATTTTCACAAAGATGAGATACTTTTC Direct Loss 0.939544048493769 0 NA NA prediction 0.879088096987538 Functional Loss - HSCB ENSG00000100209 CDS Human protein_coding chr22:29153094 chr22:29153094 nonsynonymous SNV 0.984 3 21 hm7G_associated_SNPs_5291 0 0 1 0 1 HSCB chr22:29153066 3'AG 29153066 Downstream 29bp 5150 chr11 74336497 74336497 1 + G T GBM 74336497 + 74336477 74336517 41 CAGAACAAGCAGTGAAAGAAGAAAAAATAGTGGAGCAGCCT CAGAACAAGCAGTGAAAGAATAAAAAATAGTGGAGCAGCCT Direct Loss 0.939541928394827 0 NA NA prediction 0.879083856789654 Functional Loss - POLD3 ENSG00000077514 CDS Human protein_coding chr11:74336497 chr11:74336497 stopgain 1.000 0 21 hm7G_associated_SNPs_5293 0 0 1 0 1 POLD3 chr11:74336453 3'AG 74336453 Downstream 45bp 5151 chr12 123467037 123467037 1 + G A UCEC 123467037 + 123467017 123467057 41 CTTATTAAGGGAGATGGCGAGGTCCTAGAGGAAATCGTAAC CTTATTAAGGGAGATGGCGAAGTCCTAGAGGAAATCGTAAC Direct Loss 0.939539566937275 0 NA NA prediction 0.879079133874549 Functional Loss - ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123467037 chr12:123467037 synonymous SNV . 0 21 hm7G_associated_SNPs_5294 0 0 1 0 2 ARL6IP4 chr12:123467016 3'AG 123467016 Downstream 22bp 5152 chr12 123467037 123467037 1 + G A UCEC 123467037 + 123467017 123467057 41 CTTATTAAGGGAGATGGCGAGGTCCTAGAGGAAATCGTAAC CTTATTAAGGGAGATGGCGAAGTCCTAGAGGAAATCGTAAC Direct Loss 0.939539566937275 0 NA NA prediction 0.879079133874549 Functional Loss - ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123467037 chr12:123467037 synonymous SNV . 0 21 hm7G_associated_SNPs_5294 0 0 1 0 2 ARL6IP4 chr12:123467085 5'GT 123467085 Upstream 49bp 5153 chr1 155108799 155108799 1 + G A UCEC 155108799 + 155108779 155108819 41 GACCTCAGGCACATGCGAATGACCCGGAGTGTGGACAACGT GACCTCAGGCACATGCGAATAACCCGGAGTGTGGACAACGT Direct Loss 0.93953657200306 0 NA NA prediction 0.87907314400612 Functional Loss - SLC50A1 ENSG00000169241 CDS Human protein_coding chr1:155108799 chr1:155108799 nonsynonymous SNV 0.962 0 21 hm7G_associated_SNPs_5295 0 0 1 0 2 SLC50A1 chr1:155108775 3'AG 155108775 Downstream 25bp 5154 chr1 155108799 155108799 1 + G A UCEC 155108799 + 155108779 155108819 41 GACCTCAGGCACATGCGAATGACCCGGAGTGTGGACAACGT GACCTCAGGCACATGCGAATAACCCGGAGTGTGGACAACGT Direct Loss 0.93953657200306 0 NA NA prediction 0.87907314400612 Functional Loss - SLC50A1 ENSG00000169241 CDS Human protein_coding chr1:155108799 chr1:155108799 nonsynonymous SNV 0.962 0 21 hm7G_associated_SNPs_5295 0 0 1 0 2 SLC50A1 chr1:155108852 5'GT 155108852 Upstream 54bp 5155 chr21 37783792 37783792 1 + G A rs113388736 37783792 + 37783772 37783812 41 ATGAGTCTGCCCTACCGCCTGGTGTTTGCTGTGGCCTCGGA ATGAGTCTGCCCTACCGCCTAGTGTTTGCTGTGGCCTCGGA Direct Loss 0.939528335965222 0 NA NA prediction 0.879056671930444 Functional Loss - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37783792 chr21:37783792 synonymous SNV . 0 21 hm7G_associated_SNPs_5296 0 0 1 0 1 CHAF1B chr21:37783761 3'AG 37783761 Downstream 32bp 5156 chr16 67195783 67195783 1 + G C LUSC 67195783 + 67195763 67195803 41 TGCTGCCGCCGCCAGGGTCTGCAGGGCCTGGGCCGCCGCTG TGCTGCCGCCGCCAGGGTCTCCAGGGCCTGGGCCGCCGCTG Direct Loss 0.939522309498629 0 NA NA prediction 0.879044618997257 Functional Loss - FBXL8 ENSG00000135722 CDS Human protein_coding chr16:67195783 chr16:67195783 nonsynonymous SNV 0.985 4 21 hm7G_associated_SNPs_5297 0 0 1 0 1 FBXL8 chr16:67195840 5'GT 67195840 Upstream 58bp 5157 chr18 618036 618036 1 + G A rs35437309 618036 + 618016 618056 41 TTGGTGTTTATTGTGTGTCTGCTGTGGTTGAAAGACAGTCA TTGGTGTTTATTGTGTGTCTACTGTGGTTGAAAGACAGTCA Direct Loss 0.939511589542204 0 NA NA prediction 0.879023179084409 Functional Loss - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:618036 chr18:618036 synonymous SNV . 0 21 hm7G_associated_SNPs_5298 0 0 1 0 1 CLUL1 chr18:617988 3'AG 617988 Downstream 49bp 5158 chr22 40351845 40351845 1 + G A SKCM 40351845 + 40351825 40351865 41 TTTAAGTAACCAAGAGGAGTGGTTTAAGGCGGAGCTTGGGA TTTAAGTAACCAAGAGGAGTAGTTTAAGGCGGAGCTTGGGA Direct Loss 0.939489287341889 0 NA NA prediction 0.878978574683777 Functional Loss - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40351845 chr22:40351845 stopgain 0.999 1 21 hm7G_associated_SNPs_5302 0 0 1 0 2 GRAP2 chr22:40351823 3'AG 40351823 Downstream 23bp 5159 chr22 40351845 40351845 1 + G A SKCM 40351845 + 40351825 40351865 41 TTTAAGTAACCAAGAGGAGTGGTTTAAGGCGGAGCTTGGGA TTTAAGTAACCAAGAGGAGTAGTTTAAGGCGGAGCTTGGGA Direct Loss 0.939489287341889 0 NA NA prediction 0.878978574683777 Functional Loss - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40351845 chr22:40351845 stopgain 0.999 1 21 hm7G_associated_SNPs_5302 0 0 1 0 2 GRAP2 chr22:40351914 5'GT 40351914 Upstream 70bp 5160 chr8 67066507 67066507 1 + G T LUAD 67066507 + 67066487 67066527 41 AGGCAGAAGTGGCAGCAGCCGCAGCGAGTGAGAGGGCAGCT AGGCAGAAGTGGCAGCAGCCTCAGCGAGTGAGAGGGCAGCT Direct Loss 0.939483400658568 0 NA NA prediction 0.878966801317137 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67066507 chr8:67066507 nonsynonymous SNV 0.032 2 21 hm7G_associated_SNPs_5303 0 0 0 0 1 TRIM55 chr8:67066569 5'GT 67066569 Upstream 63bp 5161 chr1 197874983 197874983 1 + G A COAD 197874983 + 197874963 197875003 41 ATGTGGTGCTCACACAGATTGCCCACTTGCAAAGAGGTGAA ATGTGGTGCTCACACAGATTACCCACTTGCAAAGAGGTGAA Direct Loss 0.93948086959769 0 NA NA prediction 0.87896173919538 Functional Loss - C1orf53 ENSG00000203724 CDS Human protein_coding chr1:197874983 chr1:197874983 nonsynonymous SNV 0.577 2 21 hm7G_associated_SNPs_5305 0 0 1 0 2 C1orf53 chr1:197874926 3'AG 197874926 Downstream 58bp 5162 chr1 197874983 197874983 1 + G A COAD 197874983 + 197874963 197875003 41 ATGTGGTGCTCACACAGATTGCCCACTTGCAAAGAGGTGAA ATGTGGTGCTCACACAGATTACCCACTTGCAAAGAGGTGAA Direct Loss 0.93948086959769 0 NA NA prediction 0.87896173919538 Functional Loss - C1orf53 ENSG00000203724 CDS Human protein_coding chr1:197874983 chr1:197874983 nonsynonymous SNV 0.577 2 21 hm7G_associated_SNPs_5305 0 0 1 0 2 C1orf53 chr1:197875027 5'GT 197875027 Upstream 45bp 5163 chr22 18562697 18562697 1 + G A BRCA 18562697 + 18562677 18562717 41 ATCCAGGCCCTGGCAGAAATGGATCGGTGGCAAGAAGTCCT ATCCAGGCCCTGGCAGAAATAGATCGGTGGCAAGAAGTCCT Direct Loss 0.939469054124163 0 NA NA prediction 0.878938108248325 Functional Loss - PEX26 ENSG00000215193 CDS Human protein_coding chr22:18562697 chr22:18562697 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5307 0 0 1 0 2 PEX26 chr22:18562640 3'AG 18562640 Downstream 58bp 5164 chr22 18562697 18562697 1 + G A BRCA 18562697 + 18562677 18562717 41 ATCCAGGCCCTGGCAGAAATGGATCGGTGGCAAGAAGTCCT ATCCAGGCCCTGGCAGAAATAGATCGGTGGCAAGAAGTCCT Direct Loss 0.939469054124163 0 NA NA prediction 0.878938108248325 Functional Loss - PEX26 ENSG00000215193 CDS Human protein_coding chr22:18562697 chr22:18562697 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5307 0 0 1 0 2 PEX26 chr22:18562780 5'GT 18562780 Upstream 84bp 5165 chr11 22382474 22382474 1 + G A SKCM 22382474 + 22382454 22382494 41 CCCAGCATGTCATGGGATATGGAGCAAATGGGCCCCACCTC CCCAGCATGTCATGGGATATAGAGCAAATGGGCCCCACCTC Direct Loss 0.939467385061209 0 NA NA prediction 0.878934770122418 Functional Loss - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22382474 chr11:22382474 stopgain 1.000 1 21 hm7G_associated_SNPs_5308 0 0 0 0 1 SLC17A6 chr11:22382530 5'GT 22382530 Upstream 57bp 5166 chr11 61916008 61916008 1 + G T STAD 61916008 + 61915988 61916028 41 GAGCAGCTGCAGAGGGAACTGGAGGAGAAGAAGAAGAAGGT GAGCAGCTGCAGAGGGAACTTGAGGAGAAGAAGAAGAAGGT Direct Loss 0.939461412282126 0 NA NA prediction 0.878922824564253 Functional Loss - INCENP ENSG00000149503 CDS Human protein_coding chr11:61916008 chr11:61916008 synonymous SNV . 0 21 hm7G_associated_SNPs_5311 0 0 1 0 1 INCENP chr11:61915948 3'AG 61915948 Downstream 61bp 5167 chr19 10127761 10127761 1 + G C BLCA 10127761 + 10127741 10127781 41 ACCATGAGGGACCTGGGGAAGAAGGAGACACTGGAGGCAGC ACCATGAGGGACCTGGGGAACAAGGAGACACTGGAGGCAGC Direct Loss 0.939458447834776 0 NA NA prediction 0.878916895669552 Functional Loss - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10127761 chr19:10127761 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_5314 0 0 0 0 1 RDH8 chr19:10127733 3'AG 10127733 Downstream 29bp 5168 chr15 31664246 31664246 1 + G A PRAD 31664246 + 31664226 31664266 41 CGCCTGCAGCTGGCAGGACTGCAACAAGAAGTTCGCGCGCT CGCCTGCAGCTGGCAGGACTACAACAAGAAGTTCGCGCGCT Direct Loss 0.9394454838982 0 NA NA prediction 0.8788909677964 Functional Loss - KLF13 ENSG00000169926 CDS Human protein_coding chr15:31664246 chr15:31664246 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5316 0 0 0 0 1 KLF13 chr15:31664213 3'AG 31664213 Downstream 34bp 5169 chr1 116670903 116670903 1 + G A BLCA 116670903 + 116670883 116670923 41 TTTCAGGTCATGAGGCACCTGAAGGAGGACATCTGGTGCCC TTTCAGGTCATGAGGCACCTAAAGGAGGACATCTGGTGCCC Direct Loss 0.939439422353601 0 NA NA prediction 0.878878844707202 Functional Loss - MAB21L3 ENSG00000173212 CDS Human protein_coding chr1:116670903 chr1:116670903 synonymous SNV . 0 21 hm7G_associated_SNPs_5317 0 0 0 0 1 MAB21L3 chr1:116670960 5'GT 116670960 Upstream 58bp 5170 chr17 64880696 64880696 1 + G T LUAD 64880696 + 64880676 64880716 41 CAACGATGAGATGCTCAACAGGACCAAGGATGCAGAGACCT CAACGATGAGATGCTCAACATGACCAAGGATGCAGAGACCT Direct Loss 0.939437888116771 0 NA NA prediction 0.878875776233542 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64880696 chr17:64880696 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_5318 0 0 0 0 1 CACNG5 chr17:64880778 5'GT 64880778 Upstream 83bp 5171 chr19 49424449 49424449 1 + G A BRCA 49424449 + 49424429 49424469 41 GCCTACACCGAGGAAGAGCTGAGGCGCTTTGAAGAGGAGCT GCCTACACCGAGGAAGAGCTAAGGCGCTTTGAAGAGGAGCT Direct Loss 0.939432194470843 0 NA NA prediction 0.878864388941687 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49424449 chr19:49424449 synonymous SNV . 0 21 hm7G_associated_SNPs_5319 0 0 1 0 1 NUCB1 chr19:49424411 3'AG 49424411 Downstream 39bp 5172 chr11 62546432 62546432 1 + G A BLCA 62546432 + 62546412 62546452 41 GGGGATGATCCGCAACTGATGAAGGTGAGCGAGTGGGCCCA GGGGATGATCCGCAACTGATAAAGGTGAGCGAGTGGGCCCA Direct Loss 0.939430900457124 0 NA NA prediction 0.878861800914249 Functional Loss - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62546432 chr11:62546432 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5320 0 0 1 0 2 TAF6L chr11:62546341 3'AG 62546341 Downstream 92bp 5173 chr11 62546432 62546432 1 + G A BLCA 62546432 + 62546412 62546452 41 GGGGATGATCCGCAACTGATGAAGGTGAGCGAGTGGGCCCA GGGGATGATCCGCAACTGATAAAGGTGAGCGAGTGGGCCCA Direct Loss 0.939430900457124 0 NA NA prediction 0.878861800914249 Functional Loss - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62546432 chr11:62546432 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5320 0 0 1 0 2 TAF6L chr11:62546435 5'GT 62546435 Upstream 4bp 5174 chr6 116910104 116910104 1 + G A SKCM 116910104 + 116910084 116910124 41 AGATAAAAACTAGAAGAGAAGAAGAAAAGAAACAAAAAGAA AGATAAAAACTAGAAGAGAAAAAGAAAAGAAACAAAAAGAA Direct Loss 0.93942778548418 0 NA NA prediction 0.87885557096836 Functional Loss - RWDD1 ENSG00000111832 CDS Human protein_coding chr6:116910104 chr6:116910104 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_5321 0 0 1 0 2 RWDD1 chr6:116910005 3'AG 116910005 Downstream 100bp 5175 chr6 116910104 116910104 1 + G A SKCM 116910104 + 116910084 116910124 41 AGATAAAAACTAGAAGAGAAGAAGAAAAGAAACAAAAAGAA AGATAAAAACTAGAAGAGAAAAAGAAAAGAAACAAAAAGAA Direct Loss 0.93942778548418 0 NA NA prediction 0.87885557096836 Functional Loss - RWDD1 ENSG00000111832 CDS Human protein_coding chr6:116910104 chr6:116910104 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_5321 0 0 1 0 2 RWDD1 chr6:116910148 5'GT 116910148 Upstream 45bp 5176 chr4 110757312 110757312 1 + G A BLCA 110757312 + 110757292 110757332 41 CCATAAACTGGAGGAAAAATGATAGGTAAGAGACAAGTTTA CCATAAACTGGAGGAAAAATAATAGGTAAGAGACAAGTTTA Direct Loss 0.939420336038506 0 NA NA prediction 0.878840672077012 Functional Loss - RRH ENSG00000180245 CDS Human protein_coding chr4:110757312 chr4:110757312 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_5323 0 0 0 0 1 RRH chr4:110757316 5'GT 110757316 Upstream 5bp 5177 chr16 67580134 67580134 1 + G A GBM 67580134 + 67580114 67580154 41 GGCAAAGCCTACAGCAGTGTGGTGAGGCTGGGGGATGGAAG GGCAAAGCCTACAGCAGTGTAGTGAGGCTGGGGGATGGAAG Direct Loss 0.939419045050457 0 NA NA prediction 0.878838090100913 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67580134 chr16:67580134 nonsynonymous SNV 0.984 4 21 hm7G_associated_SNPs_5324 0 0 0 0 2 RIPOR1 chr16:67580044 3'AG 67580044 Downstream 91bp 5178 chr16 67580134 67580134 1 + G A GBM 67580134 + 67580114 67580154 41 GGCAAAGCCTACAGCAGTGTGGTGAGGCTGGGGGATGGAAG GGCAAAGCCTACAGCAGTGTAGTGAGGCTGGGGGATGGAAG Direct Loss 0.939419045050457 0 NA NA prediction 0.878838090100913 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67580134 chr16:67580134 nonsynonymous SNV 0.984 4 21 hm7G_associated_SNPs_5324 0 0 0 0 2 RIPOR1 chr16:67580134 5'GT 67580134 Upstream 1bp 5179 chr2 88482258 88482258 1 + G A rs35051888 88482258 + 88482238 88482278 41 ATAGGCCTGCCCATCCGTCTGGTCGTGGCAGTGAACCGCAA ATAGGCCTGCCCATCCGTCTAGTCGTGGCAGTGAACCGCAA Direct Loss 0.939413192616161 0 NA NA prediction 0.878826385232322 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482258 chr2:88482258 synonymous SNV . 0 21 hm7G_associated_SNPs_5325 0 0 0 0 1 THNSL2 chr2:88482218 3'AG 88482218 Downstream 41bp 5180 chr1 15783637 15783637 1 + G C HNSC 15783637 + 15783617 15783657 41 TGACTAGGGTGGTTGGCGGTGAAGAAGCGAGGCCCAACAGC TGACTAGGGTGGTTGGCGGTCAAGAAGCGAGGCCCAACAGC Direct Loss 0.939397695515377 0 NA NA prediction 0.878795391030754 Functional Loss - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15783637 chr1:15783637 nonsynonymous SNV 0.332 1 21 hm7G_associated_SNPs_5327 0 0 0 0 2 CELA2A chr1:15783581 3'AG 15783581 Downstream 57bp 5181 chr1 15783637 15783637 1 + G C HNSC 15783637 + 15783617 15783657 41 TGACTAGGGTGGTTGGCGGTGAAGAAGCGAGGCCCAACAGC TGACTAGGGTGGTTGGCGGTCAAGAAGCGAGGCCCAACAGC Direct Loss 0.939397695515377 0 NA NA prediction 0.878795391030754 Functional Loss - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15783637 chr1:15783637 nonsynonymous SNV 0.332 1 21 hm7G_associated_SNPs_5327 0 0 0 0 2 CELA2A chr1:15783669 5'GT 15783669 Upstream 33bp 5182 chr18 8633290 8633290 1 + G C BLCA 8633290 + 8633270 8633310 41 TCACTAAGAAGGAGACATTTGATGATTTGCCGAAATGGATG TCACTAAGAAGGAGACATTTCATGATTTGCCGAAATGGATG Direct Loss 0.93939205441873 0 NA NA prediction 0.87878410883746 Functional Loss - RAB12 ENSG00000206418 CDS Human protein_coding chr18:8633290 chr18:8633290 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_5329 0 0 1 0 1 RAB12 chr18:8633325 5'GT 8633325 Upstream 36bp 5183 chr1 231410987 231410987 1 + G C LUAD 231410987 + 231410967 231411007 41 ATAATTTGCAAGTACCTTTTGAGTGAAGAAGAGGACCACTT ATAATTTGCAAGTACCTTTTCAGTGAAGAAGAGGACCACTT Direct Loss 0.939382485493732 0 NA NA prediction 0.878764970987465 Functional Loss - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231410987 chr1:231410987 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_5331 0 0 1 0 2 GNPAT chr1:231410967 3'AG 231410967 Downstream 21bp 5184 chr1 231410987 231410987 1 + G C LUAD 231410987 + 231410967 231411007 41 ATAATTTGCAAGTACCTTTTGAGTGAAGAAGAGGACCACTT ATAATTTGCAAGTACCTTTTCAGTGAAGAAGAGGACCACTT Direct Loss 0.939382485493732 0 NA NA prediction 0.878764970987465 Functional Loss - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231410987 chr1:231410987 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_5331 0 0 1 0 2 GNPAT chr1:231411066 5'GT 231411066 Upstream 80bp 5185 chr20 30584369 30584369 1 + G A UCEC 30584369 + 30584349 30584389 41 CTGGCCTCCTACCAGAAGGTGCTGCGGGACTCGCGGGACGA CTGGCCTCCTACCAGAAGGTACTGCGGGACTCGCGGGACGA Direct Loss 0.939378689739788 0 NA NA prediction 0.878757379479576 Functional Loss - XKR7 ENSG00000260903 CDS Human protein_coding chr20:30584369 chr20:30584369 synonymous SNV . 0 21 hm7G_associated_SNPs_5332 0 0 0 0 1 XKR7 chr20:30584308 3'AG 30584308 Downstream 62bp 5186 chr10 111878371 111878371 1 + G T KIRP 111878371 + 111878351 111878391 41 GTCAATATAATAGGAGAAGTGGTTGACCAGGGAAGTACCAA GTCAATATAATAGGAGAAGTTGTTGACCAGGGAAGTACCAA Direct Loss 0.939376877383004 0 NA NA prediction 0.878753754766008 Functional Loss - ADD3 ENSG00000148700 CDS Human protein_coding chr10:111878371 chr10:111878371 synonymous SNV . 0 21 hm7G_associated_SNPs_5333 0 0 1 0 1 ADD3 chr10:111878345 3'AG 111878345 Downstream 27bp 5187 chr12 2933024 2933024 1 + G T LUAD 2933024 + 2933004 2933044 41 TATGTGTACTGGGAGGTGCAGCTGGAGCGGATGGAGTCTAC TATGTGTACTGGGAGGTGCATCTGGAGCGGATGGAGTCTAC Direct Loss 0.939371872224366 0 NA NA prediction 0.878743744448733 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2933024 chr12:2933024 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_5334 0 0 1 0 2 ITFG2 chr12:2932936 3'AG 2932936 Downstream 89bp 5188 chr12 2933024 2933024 1 + G T LUAD 2933024 + 2933004 2933044 41 TATGTGTACTGGGAGGTGCAGCTGGAGCGGATGGAGTCTAC TATGTGTACTGGGAGGTGCATCTGGAGCGGATGGAGTCTAC Direct Loss 0.939371872224366 0 NA NA prediction 0.878743744448733 Functional Loss - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2933024 chr12:2933024 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_5334 0 0 1 0 2 ITFG2 chr12:2933109 5'GT 2933109 Upstream 86bp 5189 chr4 74279198 74279198 1 + G T LIHC 74279198 + 74279178 74279218 41 CTCCAGTAAACTGAAGGAATGCTGTGAAAAACCTCTGTTGG CTCCAGTAAACTGAAGGAATTCTGTGAAAAACCTCTGTTGG Direct Loss 0.939366220125418 0 NA NA prediction 0.878732440250837 Functional Loss - ALB ENSG00000163631 CDS Human protein_coding chr4:74279198 chr4:74279198 nonsynonymous SNV 0.948 5 21 hm7G_associated_SNPs_5335 0 0 1 2 1 ALB chr4:74279137 3'AG 74279137 Downstream 62bp 5190 chr1 24932103 24932103 1 + G A BLCA 24932103 + 24932083 24932123 41 TTATCTCCCTACAGGAAAATGAGGACGAGGCGGGAACTAGA TTATCTCCCTACAGGAAAATAAGGACGAGGCGGGAACTAGA Direct Loss 0.939366041357938 0 NA NA prediction 0.878732082715876 Functional Loss - NCMAP ENSG00000184454 CDS Human protein_coding chr1:24932103 chr1:24932103 nonsynonymous SNV 0.927 3 21 hm7G_associated_SNPs_5336 0 0 0 0 1 NCMAP chr1:24932097 3'AG 24932097 Downstream 7bp 5191 chr14 68087661 68087661 1 + G A BRCA 68087661 + 68087641 68087681 41 GCCATAAGAGAAGCTGGCTTGATGAAAAGGCTCTCCAGTTT GCCATAAGAGAAGCTGGCTTAATGAAAAGGCTCTCCAGTTT Direct Loss 0.939360909060527 0 NA NA prediction 0.878721818121054 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68087661 chr14:68087661 synonymous SNV . 0 21 hm7G_associated_SNPs_5337 0 0 1 0 2 ARG2 chr14:68087611 3'AG 68087611 Downstream 51bp 5192 chr14 68087661 68087661 1 + G A BRCA 68087661 + 68087641 68087681 41 GCCATAAGAGAAGCTGGCTTGATGAAAAGGCTCTCCAGTTT GCCATAAGAGAAGCTGGCTTAATGAAAAGGCTCTCCAGTTT Direct Loss 0.939360909060527 0 NA NA prediction 0.878721818121054 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68087661 chr14:68087661 synonymous SNV . 0 21 hm7G_associated_SNPs_5337 0 0 1 0 2 ARG2 chr14:68087683 5'GT 68087683 Upstream 23bp 5193 chr3 50256083 50256083 1 + G T LUAD 50256083 + 50256063 50256103 41 GTGGACCCGTTTGACGTCCTGATCCTGTGTGTGCGCGTGGC GTGGACCCGTTTGACGTCCTTATCCTGTGTGTGCGCGTGGC Direct Loss 0.939359792720561 0 NA NA prediction 0.878719585441123 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50256083 chr3:50256083 . . 0 21 hm7G_associated_SNPs_5338 0 0 1 0 2 SLC38A3 chr3:50256025 3'AG 50256025 Downstream 59bp 5194 chr3 50256083 50256083 1 + G T LUAD 50256083 + 50256063 50256103 41 GTGGACCCGTTTGACGTCCTGATCCTGTGTGTGCGCGTGGC GTGGACCCGTTTGACGTCCTTATCCTGTGTGTGCGCGTGGC Direct Loss 0.939359792720561 0 NA NA prediction 0.878719585441123 Functional Loss - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50256083 chr3:50256083 . . 0 21 hm7G_associated_SNPs_5338 0 0 1 0 2 SLC38A3 chr3:50256149 5'GT 50256149 Upstream 67bp 5195 chr5 140084151 140084151 1 + G T UCEC 140084151 + 140084131 140084171 41 AAAGGATGAAGGAGCTCAGAGAAGAGGTAAGGGTCTCCTAT AAAGGATGAAGGAGCTCAGATAAGAGGTAAGGGTCTCCTAT Direct Loss 0.939347706758704 0 NA NA prediction 0.878695413517408 Functional Loss - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140084151 chr5:140084151 stopgain 0.999 1 21 hm7G_associated_SNPs_5339 0 0 1 0 1 ZMAT2 chr5:140084156 5'GT 140084156 Upstream 6bp 5196 chr19 12781580 12781580 1 + G A CESC 12781580 + 12781560 12781600 41 AGCCAGTGCAGACGCTGGATGAGGCCAGAGATGGCGTGTCC AGCCAGTGCAGACGCTGGATAAGGCCAGAGATGGCGTGTCC Direct Loss 0.939340580398817 0 NA NA prediction 0.878681160797634 Functional Loss - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12781580 chr19:12781580 nonsynonymous SNV 0.757 3 21 hm7G_associated_SNPs_5341 0 0 1 1 1 WDR83 chr19:12781509 3'AG 12781509 Downstream 72bp 5197 chr8 21931264 21931264 1 + G T UCEC 21931264 + 21931244 21931284 41 ACTTCCAACTTGGGAAAGATGATCTTGAAAGAAGAGATGGA ACTTCCAACTTGGGAAAGATTATCTTGAAAGAAGAGATGGA Direct Loss 0.939340199842011 0 NA NA prediction 0.878680399684022 Functional Loss - DMTN ENSG00000158856 CDS Human protein_coding chr8:21931264 chr8:21931264 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5342 0 0 1 0 2 DMTN chr8:21931241 3'AG 21931241 Downstream 24bp 5198 chr8 21931264 21931264 1 + G T UCEC 21931264 + 21931244 21931284 41 ACTTCCAACTTGGGAAAGATGATCTTGAAAGAAGAGATGGA ACTTCCAACTTGGGAAAGATTATCTTGAAAGAAGAGATGGA Direct Loss 0.939340199842011 0 NA NA prediction 0.878680399684022 Functional Loss - DMTN ENSG00000158856 CDS Human protein_coding chr8:21931264 chr8:21931264 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5342 0 0 1 0 2 DMTN chr8:21931346 5'GT 21931346 Upstream 83bp 5199 chr10 94828109 94828109 1 + G A LUAD 94828109 + 94828089 94828129 41 CCCAAGGGCTGGAGCGTGATGTATAGCATCCGGGACACGCA CCCAAGGGCTGGAGCGTGATATATAGCATCCGGGACACGCA Direct Loss 0.939339263056459 0 NA NA prediction 0.878678526112918 Functional Loss - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94828109 chr10:94828109 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5343 0 0 0 0 1 CYP26C1 chr10:94828077 3'AG 94828077 Downstream 33bp 5200 chrX 135288651 135288651 1 + G C HNSC 135288651 + 135288631 135288671 41 TTGCAGGGGAAGAAGTATGTGCAAAAGGATGGCCACCACTG TTGCAGGGGAAGAAGTATGTCCAAAAGGATGGCCACCACTG Direct Loss 0.939332129851327 0 NA NA prediction 0.878664259702654 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135288651 chrX:135288651 synonymous SNV . 0 21 hm7G_associated_SNPs_5345 0 0 1 0 3 FHL1 chrX:135288566 3'AG 135288566 Downstream 86bp 5201 chrX 135288651 135288651 1 + G C HNSC 135288651 + 135288631 135288671 41 TTGCAGGGGAAGAAGTATGTGCAAAAGGATGGCCACCACTG TTGCAGGGGAAGAAGTATGTCCAAAAGGATGGCCACCACTG Direct Loss 0.939332129851327 0 NA NA prediction 0.878664259702654 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135288651 chrX:135288651 synonymous SNV . 0 21 hm7G_associated_SNPs_5345 0 0 1 0 3 FHL1 chrX:135288692 5'GT 135288692 Upstream 42bp 5202 chrX 135288651 135288651 1 + G C HNSC 135288651 + 135288631 135288671 41 TTGCAGGGGAAGAAGTATGTGCAAAAGGATGGCCACCACTG TTGCAGGGGAAGAAGTATGTCCAAAAGGATGGCCACCACTG Direct Loss 0.939332129851327 0 NA NA prediction 0.878664259702654 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135288651 chrX:135288651 synonymous SNV . 0 21 hm7G_associated_SNPs_5345 0 0 1 0 3 FHL1 chrX:135288747 5'GT 135288747 Upstream 97bp 5203 chr8 145152143 145152143 1 + G C LUAD 145152143 + 145152123 145152163 41 CCTTGTCTGCAGATGTTGATGATGATGGCTCTGCTGGTGCC CCTTGTCTGCAGATGTTGATCATGATGGCTCTGCTGGTGCC Direct Loss 0.939309582584995 0 NA NA prediction 0.878619165169991 Functional Loss - CYC1 ENSG00000179091 CDS Human protein_coding chr8:145152143 chr8:145152143 nonsynonymous SNV 0.971 0 21 hm7G_associated_SNPs_5349 0 0 1 0 1 CYC1 chr8:145152135 3'AG 145152135 Downstream 9bp 5204 chr16 85942692 85942692 1 + G A DLBC 85942692 + 85942672 85942712 41 GTGCTTTGAATAAGAGCCCAGATTTTGAGGAAGTGACGGAC GTGCTTTGAATAAGAGCCCAAATTTTGAGGAAGTGACGGAC Direct Loss 0.93930732311846 0 NA NA prediction 0.87861464623692 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85942692 chr16:85942692 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5350 0 0 0 0 2 IRF8 chr16:85942596 3'AG 85942596 Downstream 97bp 5205 chr16 85942692 85942692 1 + G A DLBC 85942692 + 85942672 85942712 41 GTGCTTTGAATAAGAGCCCAGATTTTGAGGAAGTGACGGAC GTGCTTTGAATAAGAGCCCAAATTTTGAGGAAGTGACGGAC Direct Loss 0.93930732311846 0 NA NA prediction 0.87861464623692 Functional Loss - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85942692 chr16:85942692 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5350 0 0 0 0 2 IRF8 chr16:85942779 5'GT 85942779 Upstream 88bp 5206 chr5 154346277 154346277 1 + G A BLCA 154346277 + 154346257 154346297 41 TCAGGACGAGGCCAGTGCCTGAAACGCATCCGCTACCATGG TCAGGACGAGGCCAGTGCCTAAAACGCATCCGCTACCATGG Direct Loss 0.939302834566395 0 NA NA prediction 0.878605669132791 Functional Loss - MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154346277 chr5:154346277 synonymous SNV . 0 21 hm7G_associated_SNPs_5351 0 0 1 0 1 MRPL22 chr5:154346246 3'AG 154346246 Downstream 32bp 5207 chr19 47763903 47763903 1 + G T LUAD 47763903 + 47763883 47763923 41 CCCTCGGCCCCCAGGGGCCAGCAAGGGGGGCCGGACTCCTC CCCTCGGCCCCCAGGGGCCATCAAGGGGGGCCGGACTCCTC Direct Loss 0.939288322172574 0 NA NA prediction 0.878576644345149 Functional Loss - CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47763903 chr19:47763903 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_5352 0 0 1 0 1 CCDC9 chr19:47763845 3'AG 47763845 Downstream 59bp 5208 chr14 24601436 24601436 1 + G A GBM 24601436 + 24601416 24601456 41 ACAGAAAATTTGTGAATTCAGCCTGGGGCTGGACATGCACT ACAGAAAATTTGTGAATTCAACCTGGGGCTGGACATGCACT Direct Loss 0.939287064086995 0 NA NA prediction 0.87857412817399 Functional Loss - FITM1 ENSG00000139914 CDS Human protein_coding chr14:24601436 chr14:24601436 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5353 0 0 0 0 1 FITM1 chr14:24601420 3'AG 24601420 Downstream 17bp 5209 chr11 65650760 65650760 1 + G A LIHC 65650760 + 65650740 65650780 41 GTGGACCACTCTGTCCTGCTGGTGGGTTTTGGCAGCGTCAA GTGGACCACTCTGTCCTGCTAGTGGGTTTTGGCAGCGTCAA Direct Loss 0.939275149470489 0 NA NA prediction 0.878550298940978 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65650760 chr11:65650760 synonymous SNV . 0 21 hm7G_associated_SNPs_5355 0 0 0 0 1 CTSW chr11:65650686 3'AG 65650686 Downstream 75bp 5210 chr2 73479843 73479843 1 + G T SARC 73479843 + 73479823 73479863 41 AAGCTTTCGTGTGGGAGCCAGCTATGGTGCGGATCAATGCG AAGCTTTCGTGTGGGAGCCATCTATGGTGCGGATCAATGCG Direct Loss 0.939260318851597 0 NA NA prediction 0.878520637703194 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73479843 chr2:73479843 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5356 0 0 1 0 1 CCT7 chr2:73479768 3'AG 73479768 Downstream 76bp 5211 chr12 54350180 54350180 1 + G A rs144078525 54350180 + 54350160 54350200 41 CCTATTCGAAGTTGCAACTGGCAGAGCTGGAGGGCGAGTTT CCTATTCGAAGTTGCAACTGACAGAGCTGGAGGGCGAGTTT Direct Loss 0.939255310808607 0 NA NA prediction 0.878510621617214 Functional Loss - HOXC12 ENSG00000123407 CDS Human protein_coding chr12:54350180 chr12:54350180 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_5357 0 0 0 0 1 HOXC12 chr12:54350112 3'AG 54350112 Downstream 69bp 5212 chr1 170688940 170688940 1 + G T SARC 170688940 + 170688920 170688960 41 ACAACCTTCAATAGCAGCCAGCTGCAGGCTTTGGAGCGTGT ACAACCTTCAATAGCAGCCATCTGCAGGCTTTGGAGCGTGT Direct Loss 0.939253314594738 0 NA NA prediction 0.878506629189477 Functional Loss - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170688940 chr1:170688940 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_5358 0 0 0 0 1 PRRX1 chr1:170688867 3'AG 170688867 Downstream 74bp 5213 chr22 29141879 29141879 1 + G A HNSC 29141879 + 29141859 29141899 41 TCCATGGAATAGAGATTCCTGAAAGGACAGATTATGAAATG TCCATGGAATAGAGATTCCTAAAAGGACAGATTATGAAATG Direct Loss 0.939249861692124 0 NA NA prediction 0.878499723384247 Functional Loss - HSCB ENSG00000100209 CDS Human protein_coding chr22:29141879 chr22:29141879 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_5359 0 0 1 0 1 HSCB chr22:29141852 3'AG 29141852 Downstream 28bp 5214 chr2 119749415 119749415 1 + G A SKCM 119749415 + 119749395 119749435 41 CAGGTCCCAAGGGAGCCCCTGGACAAGCTGGCCAGAAGGGA CAGGTCCCAAGGGAGCCCCTAGACAAGCTGGCCAGAAGGGA Direct Loss 0.939249627514714 0 NA NA prediction 0.878499255029427 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119749415 chr2:119749415 nonsynonymous SNV 0.228 5 21 hm7G_associated_SNPs_5360 0 0 0 0 2 MARCO chr2:119749353 3'AG 119749353 Downstream 63bp 5215 chr2 119749415 119749415 1 + G A SKCM 119749415 + 119749395 119749435 41 CAGGTCCCAAGGGAGCCCCTGGACAAGCTGGCCAGAAGGGA CAGGTCCCAAGGGAGCCCCTAGACAAGCTGGCCAGAAGGGA Direct Loss 0.939249627514714 0 NA NA prediction 0.878499255029427 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119749415 chr2:119749415 nonsynonymous SNV 0.228 5 21 hm7G_associated_SNPs_5360 0 0 0 0 2 MARCO chr2:119749451 5'GT 119749451 Upstream 37bp 5216 chr19 40486330 40486330 1 + G T UCEC 40486330 + 40486310 40486350 41 TCCACTATCACTAGCAAGATGAACCTCTCTGAGGAGGTTGA TCCACTATCACTAGCAAGATTAACCTCTCTGAGGAGGTTGA Direct Loss 0.939240346851765 0 NA NA prediction 0.87848069370353 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40486330 chr19:40486330 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5363 0 0 1 0 1 PSMC4 chr19:40486361 5'GT 40486361 Upstream 32bp 5217 chr14 45369714 45369714 1 + G A rs148935076 45369714 + 45369694 45369734 41 ATCGATCATTTTGTAGGCCTGTTCTTCCTTGGGGGGGTGTT ATCGATCATTTTGTAGGCCTATTCTTCCTTGGGGGGGTGTT Direct Loss 0.939232992738442 0 NA NA prediction 0.878465985476884 Functional Loss - C14orf28 ENSG00000179476 CDS Human antisense chr14:45369714 chr14:45369714 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5364 0 0 1 0 1 LOC101927418 chr14:45369638 3'AG 45369638 Downstream 77bp 5218 chr15 74179999 74179999 1 + G T LUAD 74179999 + 74179979 74180019 41 CCCTGCAGGAACTTCCAGGTGCTGGTGGCCTACAGCATGCT CCCTGCAGGAACTTCCAGGTTCTGGTGGCCTACAGCATGCT Direct Loss 0.939227711306061 0 NA NA prediction 0.878455422612122 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74179999 chr15:74179999 synonymous SNV . 0 21 hm7G_associated_SNPs_5366 0 0 0 0 2 TBC1D21 chr15:74179961 3'AG 74179961 Downstream 39bp 5219 chr15 74179999 74179999 1 + G T LUAD 74179999 + 74179979 74180019 41 CCCTGCAGGAACTTCCAGGTGCTGGTGGCCTACAGCATGCT CCCTGCAGGAACTTCCAGGTTCTGGTGGCCTACAGCATGCT Direct Loss 0.939227711306061 0 NA NA prediction 0.878455422612122 Functional Loss - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74179999 chr15:74179999 synonymous SNV . 0 21 hm7G_associated_SNPs_5366 0 0 0 0 2 TBC1D21 chr15:74180077 5'GT 74180077 Upstream 79bp 5220 chr19 55899664 55899664 1 + G A CESC 55899664 + 55899644 55899684 41 AGCCAGAAGCCTGTGATGGTGAAGAGGAAGCGGACCCGCCC AGCCAGAAGCCTGTGATGGTAAAGAGGAAGCGGACCCGCCC Direct Loss 0.939224445720807 0 NA NA prediction 0.878448891441613 Functional Loss - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55899664 chr19:55899664 synonymous SNV . 0 21 hm7G_associated_SNPs_5367 0 0 1 0 1 RPL28 chr19:55899611 3'AG 55899611 Downstream 54bp 5221 chr22 46125462 46125462 1 + G A rs186780419 46125462 + 46125442 46125482 41 TGGCCTCTGAGGAGCCTCCTGATGATGAGGTAAGGGAGGCA TGGCCTCTGAGGAGCCTCCTAATGATGAGGTAAGGGAGGCA Direct Loss 0.939222706443343 0 NA NA prediction 0.878445412886686 Functional Loss - ATXN10 ENSG00000130638 CDS Human protein_coding chr22:46125462 chr22:46125462 nonsynonymous SNV 0.182 1 21 hm7G_associated_SNPs_5368 0 0 0 0 1 ATXN10 chr22:46125470 5'GT 46125470 Upstream 9bp 5222 chr17 42850673 42850673 1 + G A HNSC 42850673 + 42850653 42850693 41 CGCATCGTCCTGGTTGCCATGGAAACATGGGCAGATGGGGA CGCATCGTCCTGGTTGCCATAGAAACATGGGCAGATGGGGA Direct Loss 0.939201201901711 0 NA NA prediction 0.878402403803421 Functional Loss - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42850673 chr17:42850673 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5369 0 0 0 0 1 ADAM11 chr17:42850629 3'AG 42850629 Downstream 45bp 5223 chr19 34900108 34900108 1 + G A COAD 34900108 + 34900088 34900128 41 CTGAGGACTGGTGTGAAGGTGCTGATGACTGGGGAAGTGAT CTGAGGACTGGTGTGAAGGTACTGATGACTGGGGAAGTGAT Direct Loss 0.93919673667644 0 NA NA prediction 0.878393473352879 Functional Loss - PDCD2L ENSG00000126249;ENSG00000266953 CDS Human other chr19:34900108 chr19:34900108 nonsynonymous SNV 0.901 1 21 hm7G_associated_SNPs_5370 0 0 1 0 1 PDCD2L chr19:34900066 3'AG 34900066 Downstream 43bp 5224 chr6 80982857 80982857 1 + G C LUAD 80982857 + 80982837 80982877 41 TCTTTTCTCTTTCAGTCTGTGATCAAAACAGGGCGACTGCT TCTTTTCTCTTTCAGTCTGTCATCAAAACAGGGCGACTGCT Direct Loss 0.939193757400735 0 NA NA prediction 0.878387514801469 Functional Loss - BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80982857 chr6:80982857 synonymous SNV . 0 21 hm7G_associated_SNPs_5371 0 0 1 0 2 BCKDHB chr6:80982852 3'AG 80982852 Downstream 6bp 5225 chr6 80982857 80982857 1 + G C LUAD 80982857 + 80982837 80982877 41 TCTTTTCTCTTTCAGTCTGTGATCAAAACAGGGCGACTGCT TCTTTTCTCTTTCAGTCTGTCATCAAAACAGGGCGACTGCT Direct Loss 0.939193757400735 0 NA NA prediction 0.878387514801469 Functional Loss - BCKDHB ENSG00000083123 CDS Human protein_coding chr6:80982857 chr6:80982857 synonymous SNV . 0 21 hm7G_associated_SNPs_5371 0 0 1 0 2 BCKDHB chr6:80982938 5'GT 80982938 Upstream 82bp 5226 chr14 93652638 93652638 1 + G T SARC 93652638 + 93652618 93652658 41 AGAATGATGAACTTCCGTCAGCGGATGGGATGGATTGGAGT AGAATGATGAACTTCCGTCATCGGATGGGATGGATTGGAGT Direct Loss 0.93918885073878 0 NA NA prediction 0.87837770147756 Functional Loss - TMEM251 ENSG00000153485;ENSG00000259066 CDS Human protein_coding chr14:93652638 chr14:93652638 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5373 0 0 1 0 1 TMEM251 chr14:93652605 3'AG 93652605 Downstream 34bp 5227 chr6 49437896 49437896 1 + G T KIRC 49437896 + 49437876 49437916 41 GTGTTTAGATCAAGATGTCTGGTAAAGCAAATGCTTCCAAG GTGTTTAGATCAAGATGTCTTGTAAAGCAAATGCTTCCAAG Direct Loss 0.939171880366209 0 NA NA prediction 0.878343760732419 Functional Loss - CENPQ ENSG00000031691 CDS Human protein_coding chr6:49437896 chr6:49437896 nonsynonymous SNV 0.970 2 21 hm7G_associated_SNPs_5375 0 0 1 0 2 CENPQ chr6:49437872 3'AG 49437872 Downstream 25bp 5228 chr6 49437896 49437896 1 + G T KIRC 49437896 + 49437876 49437916 41 GTGTTTAGATCAAGATGTCTGGTAAAGCAAATGCTTCCAAG GTGTTTAGATCAAGATGTCTTGTAAAGCAAATGCTTCCAAG Direct Loss 0.939171880366209 0 NA NA prediction 0.878343760732419 Functional Loss - CENPQ ENSG00000031691 CDS Human protein_coding chr6:49437896 chr6:49437896 nonsynonymous SNV 0.970 2 21 hm7G_associated_SNPs_5375 0 0 1 0 2 CENPQ chr6:49437991 5'GT 49437991 Upstream 96bp 5229 chr16 58550743 58550743 1 + G A BLCA 58550743 + 58550723 58550763 41 CACTGGAGGAAGAAGAGGATGAAAAGGAGCCCAACTCCCCC CACTGGAGGAAGAAGAGGATAAAAAGGAGCCCAACTCCCCC Direct Loss 0.93917111925427 0 NA NA prediction 0.87834223850854 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550743 chr16:58550743 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_5376 0 0 1 0 2 SETD6 chr16:58550712 3'AG 58550712 Downstream 32bp 5230 chr16 58550743 58550743 1 + G A BLCA 58550743 + 58550723 58550763 41 CACTGGAGGAAGAAGAGGATGAAAAGGAGCCCAACTCCCCC CACTGGAGGAAGAAGAGGATAAAAAGGAGCCCAACTCCCCC Direct Loss 0.93917111925427 0 NA NA prediction 0.87834223850854 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58550743 chr16:58550743 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_5376 0 0 1 0 2 SETD6 chr16:58550832 5'GT 58550832 Upstream 90bp 5231 chr17 641131 641131 1 + G A BLCA 641131 + 641111 641151 41 TGGTTTCTGATTCCATACATGATCTATGACTCGTACGCCAT TGGTTTCTGATTCCATACATAATCTATGACTCGTACGCCAT Direct Loss 0.939151622577249 0 NA NA prediction 0.878303245154499 Functional Loss - FAM57A ENSG00000167695 CDS Human protein_coding chr17:641131 chr17:641131 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_5378 0 0 1 0 1 FAM57A chr17:641086 3'AG 641086 Downstream 46bp 5232 chr3 197574833 197574833 1 + G T BRCA 197574833 + 197574813 197574853 41 AGCTTGCTGCCCTGCAGTATGAGGAGGAGAAAATAAGGACC AGCTTGCTGCCCTGCAGTATTAGGAGGAGAAAATAAGGACC Direct Loss 0.939142672789363 0 NA NA prediction 0.878285345578726 Functional Loss - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197574833 chr3:197574833 stopgain 1.000 1 21 hm7G_associated_SNPs_5380 0 0 1 0 2 LRCH3 chr3:197574743 3'AG 197574743 Downstream 91bp 5233 chr3 197574833 197574833 1 + G T BRCA 197574833 + 197574813 197574853 41 AGCTTGCTGCCCTGCAGTATGAGGAGGAGAAAATAAGGACC AGCTTGCTGCCCTGCAGTATTAGGAGGAGAAAATAAGGACC Direct Loss 0.939142672789363 0 NA NA prediction 0.878285345578726 Functional Loss - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197574833 chr3:197574833 stopgain 1.000 1 21 hm7G_associated_SNPs_5380 0 0 1 0 2 LRCH3 chr3:197574892 5'GT 197574892 Upstream 60bp 5234 chr14 77926052 77926052 1 + G A UCEC 77926052 + 77926032 77926072 41 GAAGAAGGCAAGTGTGAGGTGACGGAAGTGAGTAAGCTTGA GAAGAAGGCAAGTGTGAGGTAACGGAAGTGAGTAAGCTTGA Direct Loss 0.939128711242111 0 NA NA prediction 0.878257422484223 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77926052 chr14:77926052 synonymous SNV . 0 21 hm7G_associated_SNPs_5384 0 0 1 0 2 AHSA1 chr14:77925959 3'AG 77925959 Downstream 94bp 5235 chr14 77926052 77926052 1 + G A UCEC 77926052 + 77926032 77926072 41 GAAGAAGGCAAGTGTGAGGTGACGGAAGTGAGTAAGCTTGA GAAGAAGGCAAGTGTGAGGTAACGGAAGTGAGTAAGCTTGA Direct Loss 0.939128711242111 0 NA NA prediction 0.878257422484223 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77926052 chr14:77926052 synonymous SNV . 0 21 hm7G_associated_SNPs_5384 0 0 1 0 2 AHSA1 chr14:77926149 5'GT 77926149 Upstream 98bp 5236 chr7 128315748 128315748 1 + G A UCEC 128315748 + 128315728 128315768 41 GGTCACTAAGCCCGGGAACTGGAGAGATGTCTGTGAAGGGT GGTCACTAAGCCCGGGAACTAGAGAGATGTCTGTGAAGGGT Direct Loss 0.939126249402871 0 NA NA prediction 0.878252498805741 Functional Loss - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128315748 chr7:128315748 stopgain 0.115 0 21 hm7G_associated_SNPs_5385 0 0 0 1 1 FAM71F2 chr7:128315729 3'AG 128315729 Downstream 20bp 5237 chr8 87151726 87151726 1 + G A UCEC 87151726 + 87151706 87151746 41 ATGTGATTCTGCTGATGAATGGTGCATTGCAGAAAAAATCT ATGTGATTCTGCTGATGAATAGTGCATTGCAGAAAAAATCT Direct Loss 0.939114772645971 0 NA NA prediction 0.878229545291942 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87151726 chr8:87151726 nonsynonymous SNV 0.981 4 21 hm7G_associated_SNPs_5387 0 0 0 0 1 ATP6V0D2 chr8:87151686 3'AG 87151686 Downstream 41bp 5238 chr16 29815386 29815386 1 + G A SKCM 29815386 + 29815366 29815406 41 AATAAAGGCCGGAAGAGAAAGGTGAAAGTAGCTGGGGGCTT AATAAAGGCCGGAAGAGAAAAGTGAAAGTAGCTGGGGGCTT Direct Loss 0.939111398299137 0 NA NA prediction 0.878222796598275 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29815386 chr16:29815386 synonymous SNV . 0 21 hm7G_associated_SNPs_5388 0 0 1 0 2 KIF22 chr16:29815319 3'AG 29815319 Downstream 68bp 5239 chr16 29815386 29815386 1 + G A SKCM 29815386 + 29815366 29815406 41 AATAAAGGCCGGAAGAGAAAGGTGAAAGTAGCTGGGGGCTT AATAAAGGCCGGAAGAGAAAAGTGAAAGTAGCTGGGGGCTT Direct Loss 0.939111398299137 0 NA NA prediction 0.878222796598275 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29815386 chr16:29815386 synonymous SNV . 0 21 hm7G_associated_SNPs_5388 0 0 1 0 2 KIF22 chr16:29815386 5'GT 29815386 Upstream 1bp 5240 chr17 45785787 45785787 1 + G T SARC 45785787 + 45785767 45785807 41 TTGGCGCTGGCCTACACCGAGCTGACGGAGGAGCTGGGCCG TTGGCGCTGGCCTACACCGATCTGACGGAGGAGCTGGGCCG Direct Loss 0.939110674851663 0 NA NA prediction 0.878221349703326 Functional Loss - TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45785787 chr17:45785787 nonsynonymous SNV 0.198 4 21 hm7G_associated_SNPs_5389 0 0 1 0 1 TBKBP1 chr17:45785878 5'GT 45785878 Upstream 92bp 5241 chr11 67164707 67164707 1 + G A SKCM 67164707 + 67164687 67164727 41 GACTCTTACATGATCGCCATGGAAACCACTATAGGCAATGA GACTCTTACATGATCGCCATAGAAACCACTATAGGCAATGA Direct Loss 0.939103452849302 0 NA NA prediction 0.878206905698605 Functional Loss - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67164707 chr11:67164707 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5390 0 0 1 0 1 RAD9A chr11:67164650 3'AG 67164650 Downstream 58bp 5242 chr10 114063043 114063043 1 + G A ESCA 114063043 + 114063023 114063063 41 GTTCTCCACCACCTCATCATGATGTTGGGGATTTGTGCCGT GTTCTCCACCACCTCATCATAATGTTGGGGATTTGTGCCGT Direct Loss 0.9391004227741 0 NA NA prediction 0.8782008455482 Functional Loss - TECTB ENSG00000119913 CDS Human protein_coding chr10:114063043 chr10:114063043 nonsynonymous SNV 0.980 0 21 hm7G_associated_SNPs_5391 0 0 0 0 1 TECTB chr10:114063021 3'AG 114063021 Downstream 23bp 5243 chr2 12863631 12863631 1 + G T LUSC 12863631 + 12863611 12863651 41 TGCCATGACGGGGGGCTGGTGCTGCGGGACCTCAAGCTGCG TGCCATGACGGGGGGCTGGTTCTGCGGGACCTCAAGCTGCG Direct Loss 0.939099583175588 0 NA NA prediction 0.878199166351176 Functional Loss - TRIB2 ENSG00000071575 CDS Human protein_coding chr2:12863631 chr2:12863631 synonymous SNV . 0 21 hm7G_associated_SNPs_5392 0 0 1 0 1 TRIB2 chr2:12863678 5'GT 12863678 Upstream 48bp 5244 chr12 2908316 2908316 1 + G T SARC 2908316 + 2908296 2908336 41 GGGAGCTCCGCTTTGAGATTGGCGAGGGGGAGAACCTGGAT GGGAGCTCCGCTTTGAGATTTGCGAGGGGGAGAACCTGGAT Direct Loss 0.939097364865544 0 NA NA prediction 0.878194729731087 Functional Loss - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2908316 chr12:2908316 nonsynonymous SNV 0.919 5 21 hm7G_associated_SNPs_5393 0 0 1 0 2 FKBP4 chr12:2908254 3'AG 2908254 Downstream 63bp 5245 chr12 2908316 2908316 1 + G T SARC 2908316 + 2908296 2908336 41 GGGAGCTCCGCTTTGAGATTGGCGAGGGGGAGAACCTGGAT GGGAGCTCCGCTTTGAGATTTGCGAGGGGGAGAACCTGGAT Direct Loss 0.939097364865544 0 NA NA prediction 0.878194729731087 Functional Loss - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2908316 chr12:2908316 nonsynonymous SNV 0.919 5 21 hm7G_associated_SNPs_5393 0 0 1 0 2 FKBP4 chr12:2908410 5'GT 2908410 Upstream 95bp 5246 chr20 2377257 2377257 1 + G A SKCM 2377257 + 2377237 2377277 41 GCACATACGAGCCCAGGGCTGGAACTACGGGCAGGTCTCCA GCACATACGAGCCCAGGGCTAGAACTACGGGCAGGTCTCCA Direct Loss 0.939094911087691 0 NA NA prediction 0.878189822175382 Functional Loss - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2377257 chr20:2377257 stopgain 1.000 1 21 hm7G_associated_SNPs_5394 0 0 0 0 1 TGM6 chr20:2377270 5'GT 2377270 Upstream 14bp 5247 chr13 29236562 29236562 1 + G T GBM 29236562 + 29236542 29236582 41 TGTAGAATGCCAGAGGACTTGGATCTGAGCTAAAGGACAGT TGTAGAATGCCAGAGGACTTTGATCTGAGCTAAAGGACAGT Direct Loss 0.939094793270501 0 NA NA prediction 0.878189586541002 Functional Loss - POMP ENSG00000132963 CDS Human protein_coding chr13:29236562 chr13:29236562 stopgain 0.990 1 21 hm7G_associated_SNPs_5395 0 0 1 0 1 POMP chr13:29236547 3'AG 29236547 Downstream 16bp 5248 chr5 132015431 132015431 1 + G A OV 132015431 + 132015411 132015451 41 AACTGAGAAGGAAACCTTCTGCAGGGCTGCGACTGTGCTCC AACTGAGAAGGAAACCTTCTACAGGGCTGCGACTGTGCTCC Direct Loss 0.939081435911373 0 NA NA prediction 0.878162871822747 Functional Loss - IL4 ENSG00000113520 CDS Human protein_coding chr5:132015431 chr5:132015431 nonsynonymous SNV 0.765 5 21 hm7G_associated_SNPs_5399 0 0 0 0 1 IL4 chr5:132015406 3'AG 132015406 Downstream 26bp 5249 chr3 112301521 112301521 1 + G A HNSC 112301521 + 112301501 112301541 41 TTCATGTTTCCTTTTAGGATGGAGAAGAACTAGAAAGACTT TTCATGTTTCCTTTTAGGATAGAGAAGAACTAGAAAGACTT Direct Loss 0.939067476264993 0 NA NA prediction 0.878134952529985 Functional Loss - SLC35A5 ENSG00000138459 CDS Human protein_coding chr3:112301521 chr3:112301521 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5401 0 0 0 0 1 SLC35A5 chr3:112301518 3'AG 112301518 Downstream 4bp 5250 chr22 37266489 37266489 1 + G T STAD 37266489 + 37266469 37266509 41 CTGCCGGTCTGGGTGCTGATGGATGAGGACGTCCGGATCTT CTGCCGGTCTGGGTGCTGATTGATGAGGACGTCCGGATCTT Direct Loss 0.939062826884419 0 NA NA prediction 0.878125653768838 Functional Loss - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37266489 chr22:37266489 nonsynonymous SNV 0.978 0 21 hm7G_associated_SNPs_5402 0 0 0 0 1 NCF4 chr22:37266457 3'AG 37266457 Downstream 33bp 5251 chr4 100756871 100756871 1 + G A SKCM 100756871 + 100756851 100756891 41 ACCTTCTGAGGGACAGCAATGAGACCACCGGGCTGTACTCT ACCTTCTGAGGGACAGCAATAAGACCACCGGGCTGTACTCT Direct Loss 0.939040204649338 0 NA NA prediction 0.878080409298675 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100756871 chr4:100756871 nonsynonymous SNV 0.814 1 21 hm7G_associated_SNPs_5406 0 0 0 0 2 DAPP1 chr4:100756780 3'AG 100756780 Downstream 92bp 5252 chr4 100756871 100756871 1 + G A SKCM 100756871 + 100756851 100756891 41 ACCTTCTGAGGGACAGCAATGAGACCACCGGGCTGTACTCT ACCTTCTGAGGGACAGCAATAAGACCACCGGGCTGTACTCT Direct Loss 0.939040204649338 0 NA NA prediction 0.878080409298675 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100756871 chr4:100756871 nonsynonymous SNV 0.814 1 21 hm7G_associated_SNPs_5406 0 0 0 0 2 DAPP1 chr4:100756902 5'GT 100756902 Upstream 32bp 5253 chr15 90617383 90617383 1 + G T THYM 90617383 + 90617363 90617403 41 TTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTGCA TTCAACCGCATGTACAACCTTCTGGGCCACATGCACCTGCA Direct Loss 0.939036866140451 0 NA NA prediction 0.878073732280902 Functional Loss - ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90617383 chr15:90617383 synonymous SNV . 0 21 hm7G_associated_SNPs_5407 0 0 0 0 1 ZNF710 chr15:90617348 3'AG 90617348 Downstream 36bp 5254 chrX 152771529 152771529 1 + G A COAD 152771529 + 152771509 152771549 41 CGGGCTCCGGAACATGAACTGCATCGGTGAGCTGAGGGCCT CGGGCTCCGGAACATGAACTACATCGGTGAGCTGAGGGCCT Direct Loss 0.939035871582111 0 NA NA prediction 0.878071743164223 Functional Loss - BGN ENSG00000182492 CDS Human protein_coding chrX:152771529 chrX:152771529 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5408 0 0 0 0 1 BGN chrX:152771534 5'GT 152771534 Upstream 6bp 5255 chr20 47855587 47855587 1 + G A STAD 47855587 + 47855567 47855607 41 AAGAGATGCAGCAGTCAGAAGCCCAGGTGAGGCTGCGAGGC AAGAGATGCAGCAGTCAGAAACCCAGGTGAGGCTGCGAGGC Direct Loss 0.93903254546236 0 NA NA prediction 0.878065090924719 Functional Loss - DDX27 ENSG00000124201;ENSG00000124228 CDS Human other chr20:47855587 chr20:47855587 nonsynonymous SNV 0.928 1 21 hm7G_associated_SNPs_5409 0 0 1 0 1 DDX27 chr20:47855592 5'GT 47855592 Upstream 6bp 5256 chr11 62533971 62533971 1 + G T LIHC 62533971 + 62533951 62533991 41 TTTCTGGTTTCGCAGGGCTTGTAAGCTGAGCCTGGTGGCCT TTTCTGGTTTCGCAGGGCTTTTAAGCTGAGCCTGGTGGCCT Direct Loss 0.939025217397615 0 NA NA prediction 0.87805043479523 Functional Loss - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62533971 chr11:62533971 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_5410 0 0 1 1 1 POLR2G chr11:62533966 3'AG 62533966 Downstream 6bp 5257 chr11 62529353 62529353 1 + G A LUAD 62529353 + 62529333 62529373 41 AAGCAGAAGCTCTTCACCGAGGTGGAGGGGACCTGCACAGG AAGCAGAAGCTCTTCACCGAAGTGGAGGGGACCTGCACAGG Direct Loss 0.939024985946338 0 NA NA prediction 0.878049971892676 Functional Loss - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62529353 chr11:62529353 synonymous SNV . 0 21 hm7G_associated_SNPs_5411 0 0 1 0 2 POLR2G chr11:62529267 3'AG 62529267 Downstream 87bp 5258 chr11 62529353 62529353 1 + G A LUAD 62529353 + 62529333 62529373 41 AAGCAGAAGCTCTTCACCGAGGTGGAGGGGACCTGCACAGG AAGCAGAAGCTCTTCACCGAAGTGGAGGGGACCTGCACAGG Direct Loss 0.939024985946338 0 NA NA prediction 0.878049971892676 Functional Loss - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62529353 chr11:62529353 synonymous SNV . 0 21 hm7G_associated_SNPs_5411 0 0 1 0 2 POLR2G chr11:62529376 5'GT 62529376 Upstream 24bp 5259 chr1 42922986 42922986 1 + G T GBM 42922986 + 42922966 42923006 41 TTCCTGTCTCTGAAATGCCTGAACACAAGATCCAGTCATCT TTCCTGTCTCTGAAATGCCTTAACACAAGATCCAGTCATCT Direct Loss 0.939019851821784 0 NA NA prediction 0.878039703643569 Functional Loss - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922986 chr1:42922986 stopgain 1.000 1 21 hm7G_associated_SNPs_5413 0 0 1 0 2 PPCS chr1:42922918 3'AG 42922918 Downstream 69bp 5260 chr1 42922986 42922986 1 + G T GBM 42922986 + 42922966 42923006 41 TTCCTGTCTCTGAAATGCCTGAACACAAGATCCAGTCATCT TTCCTGTCTCTGAAATGCCTTAACACAAGATCCAGTCATCT Direct Loss 0.939019851821784 0 NA NA prediction 0.878039703643569 Functional Loss - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922986 chr1:42922986 stopgain 1.000 1 21 hm7G_associated_SNPs_5413 0 0 1 0 2 PPCS chr1:42923021 5'GT 42923021 Upstream 36bp 5261 chr19 39665623 39665623 1 + G T SARC 39665623 + 39665603 39665643 41 TGTGGTGGAGATGTACAACAGCTACCTGGTGGGGGACGAGC TGTGGTGGAGATGTACAACATCTACCTGGTGGGGGACGAGC Direct Loss 0.939015272108057 0 NA NA prediction 0.878030544216115 Functional Loss - PAK4 ENSG00000130669 CDS Human protein_coding chr19:39665623 chr19:39665623 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5415 0 0 1 0 2 PAK4 chr19:39665571 3'AG 39665571 Downstream 53bp 5262 chr19 39665623 39665623 1 + G T SARC 39665623 + 39665603 39665643 41 TGTGGTGGAGATGTACAACAGCTACCTGGTGGGGGACGAGC TGTGGTGGAGATGTACAACATCTACCTGGTGGGGGACGAGC Direct Loss 0.939015272108057 0 NA NA prediction 0.878030544216115 Functional Loss - PAK4 ENSG00000130669 CDS Human protein_coding chr19:39665623 chr19:39665623 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5415 0 0 1 0 2 PAK4 chr19:39665704 5'GT 39665704 Upstream 82bp 5263 chr13 73327858 73327858 1 + G T STAD 73327858 + 73327838 73327878 41 GCTATAATACGCAGAATTGTGGAAGCAATATTATGGATACA GCTATAATACGCAGAATTGTTGAAGCAATATTATGGATACA Direct Loss 0.93901416048075 0 NA NA prediction 0.878028320961501 Functional Loss - BORA ENSG00000136122 CDS Human protein_coding chr13:73327858 chr13:73327858 stopgain 0.976 1 21 hm7G_associated_SNPs_5416 0 0 1 0 1 BORA chr13:73327828 3'AG 73327828 Downstream 31bp 5264 chr1 156025060 156025060 1 + G A BLCA 156025060 + 156025040 156025080 41 CCGCCCCTCACCAGGCTGCTGAATAACGAGGGATCACTGCT CCGCCCCTCACCAGGCTGCTAAATAACGAGGGATCACTGCT Direct Loss 0.939006957792112 0 NA NA prediction 0.878013915584223 Functional Loss - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156025060 chr1:156025060 synonymous SNV . 0 21 hm7G_associated_SNPs_5417 0 0 1 0 1 LAMTOR2 chr1:156025054 3'AG 156025054 Downstream 7bp 5265 chr3 167507093 167507093 1 + G C STAD 167507093 + 167507073 167507113 41 ATTGCTCTTGCAATGGGAATGATGGAACTTGGGGCCCAAGG ATTGCTCTTGCAATGGGAATCATGGAACTTGGGGCCCAAGG Direct Loss 0.938999006866581 0 NA NA prediction 0.877998013733162 Functional Loss - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167507093 chr3:167507093 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5418 0 0 0 0 1 SERPINI1 chr3:167507166 5'GT 167507166 Upstream 74bp 5266 chr11 64990058 64990058 1 + G A HNSC 64990058 + 64990038 64990078 41 AAGGAGGAAGGGGAAAGGCTGACCAAGGAGGTAAGCGAGCT AAGGAGGAAGGGGAAAGGCTAACCAAGGAGGTAAGCGAGCT Direct Loss 0.938998347971703 0 NA NA prediction 0.877996695943406 Functional Loss - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64990058 chr11:64990058 . . 0 21 hm7G_associated_SNPs_5419 0 0 0 0 1 SLC22A20 chr11:64990067 5'GT 64990067 Upstream 10bp 5267 chr8 124449560 124449560 1 + G A CESC 124449560 + 124449540 124449580 41 GCCTCCGCCGCCATATCCCTGCATTGAGACTGGAGGTGAGC GCCTCCGCCGCCATATCCCTACATTGAGACTGGAGGTGAGC Direct Loss 0.938996314302357 0 NA NA prediction 0.877992628604714 Functional Loss - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124449560 chr8:124449560 nonsynonymous SNV 0.954 4 21 hm7G_associated_SNPs_5420 0 0 1 0 1 WDYHV1 chr8:124449574 5'GT 124449574 Upstream 15bp 5268 chr16 29814234 29814234 1 + G A rs2450399 29814234 + 29814214 29814254 41 ATGGTGCTAATGAAGACAGTGGAAGAGAAGGACCTAGAGAT ATGGTGCTAATGAAGACAGTAGAAGAGAAGGACCTAGAGAT Direct Loss 0.93899545336357 0 NA NA prediction 0.877990906727141 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29814234 chr16:29814234 synonymous SNV . 0 21 hm7G_associated_SNPs_5421 0 0 1 0 1 KIF22 chr16:29814258 5'GT 29814258 Upstream 25bp 5269 chrX 71379777 71379777 1 + G A rs199620278 71379777 + 71379757 71379797 41 GGAAATTGCAGACGGGCTGCGCCTGGAGGTGGAAGGGAAGA GGAAATTGCAGACGGGCTGCACCTGGAGGTGGAAGGGAAGA Direct Loss 0.938982061580216 0 NA NA prediction 0.877964123160431 Functional Loss - FLJ44635 ENSG00000225471 ncRNA_exonic Human transcribed_processed_pseudogene chrX:71379777 chrX:71379777 . . 0 21 hm7G_associated_SNPs_5424 0 0 0 0 1 FLJ44635 chrX:71379687 3'AG 71379687 Downstream 91bp 5270 chr22 27019213 27019213 1 + G A CESC 27019213 + 27019193 27019233 41 CACAGATGGTGGTGTGGGATGAGGACGGCTTCCAGGGCCGG CACAGATGGTGGTGTGGGATAAGGACGGCTTCCAGGGCCGG Direct Loss 0.93897436266749 0 NA NA prediction 0.87794872533498 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27019213 chr22:27019213 nonsynonymous SNV 0.981 1 21 hm7G_associated_SNPs_5425 0 0 0 0 1 CRYBA4 chr22:27019198 3'AG 27019198 Downstream 16bp 5271 chr10 30748249 30748249 1 + G C LUAD 30748249 + 30748229 30748269 41 AGTCCAGGGATGAGAGAGCTGATAGAAGCTTCCCTGGAGAG AGTCCAGGGATGAGAGAGCTCATAGAAGCTTCCCTGGAGAG Direct Loss 0.938962103626874 0 NA NA prediction 0.877924207253748 Functional Loss - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30748249 chr10:30748249 synonymous SNV . 0 21 hm7G_associated_SNPs_5427 0 0 0 0 1 MAP3K8 chr10:30748184 3'AG 30748184 Downstream 66bp 5272 chr1 153177196 153177196 1 + G A SKCM 153177196 + 153177176 153177216 41 AAGAAACAATGTCGAGTGATGATAAAAGTAAATCAAATGAC AAGAAACAATGTCGAGTGATAATAAAAGTAAATCAAATGAC Direct Loss 0.938958917106551 0 NA NA prediction 0.877917834213102 Functional Loss - LELP1 ENSG00000203784 CDS Human protein_coding chr1:153177196 chr1:153177196 nonsynonymous SNV 0.788 1 21 hm7G_associated_SNPs_5428 0 0 0 0 1 LELP1 chr1:153177163 3'AG 153177163 Downstream 34bp 5273 chr4 651250 651250 1 + G A SKCM 651250 + 651230 651270 41 GACATGGTCCTTTACCACGTGAAGTGCGACAGGGACGAGAT GACATGGTCCTTTACCACGTAAAGTGCGACAGGGACGAGAT Direct Loss 0.938955315143168 0 NA NA prediction 0.877910630286337 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:651250 chr4:651250 synonymous SNV . 0 21 hm7G_associated_SNPs_5429 0 0 0 0 1 PDE6B chr4:651283 5'GT 651283 Upstream 34bp 5274 chr3 93813021 93813021 1 + G C CESC 93813021 + 93813001 93813041 41 GAATATGATAGTCTGAGATTGAGGTGGCTAAGGCAGACGTT GAATATGATAGTCTGAGATTCAGGTGGCTAAGGCAGACGTT Direct Loss 0.93895088282666 0 NA NA prediction 0.87790176565332 Functional Loss - NSUN3 ENSG00000178694 CDS Human protein_coding chr3:93813021 chr3:93813021 nonsynonymous SNV 0.226 0 21 hm7G_associated_SNPs_5430 0 0 1 0 1 NSUN3 chr3:93812984 3'AG 93812984 Downstream 38bp 5275 chr21 45096201 45096201 1 + G T SARC 45096201 + 45096181 45096221 41 TCGATCCATTCTGCAAAATTGCTGCGAAGACGAAGGAGTAA TCGATCCATTCTGCAAAATTTCTGCGAAGACGAAGGAGTAA Direct Loss 0.938950792549879 0 NA NA prediction 0.877901585099758 Functional Loss - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45096201 chr21:45096201 nonsynonymous SNV 0.775 2 21 hm7G_associated_SNPs_5431 0 0 1 0 2 RRP1B chr21:45096153 3'AG 45096153 Downstream 49bp 5276 chr21 45096201 45096201 1 + G T SARC 45096201 + 45096181 45096221 41 TCGATCCATTCTGCAAAATTGCTGCGAAGACGAAGGAGTAA TCGATCCATTCTGCAAAATTTCTGCGAAGACGAAGGAGTAA Direct Loss 0.938950792549879 0 NA NA prediction 0.877901585099758 Functional Loss - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45096201 chr21:45096201 nonsynonymous SNV 0.775 2 21 hm7G_associated_SNPs_5431 0 0 1 0 2 RRP1B chr21:45096217 5'GT 45096217 Upstream 17bp 5277 chr15 77756709 77756709 1 + G A UCEC 77756709 + 77756689 77756729 41 CAAATGCAGCAGAAGGCAATGAACAGAGGCATGAAGATGAG CAAATGCAGCAGAAGGCAATAAACAGAGGCATGAAGATGAG Direct Loss 0.93893808219635 0 NA NA prediction 0.877876164392699 Functional Loss - HMG20A ENSG00000140382 CDS Human protein_coding chr15:77756709 chr15:77756709 nonsynonymous SNV 0.844 3 21 hm7G_associated_SNPs_5433 0 0 1 0 1 HMG20A chr15:77756729 5'GT 77756729 Upstream 21bp 5278 chr1 70883708 70883708 1 + G T UCEC 70883708 + 70883688 70883728 41 ATTATTTGTATGGATGATGTGTATGGAGGTAGGTGACCCCT ATTATTTGTATGGATGATGTTTATGGAGGTAGGTGACCCCT Direct Loss 0.938934930051461 0 NA NA prediction 0.877869860102922 Functional Loss - CTH ENSG00000116761 CDS Human protein_coding chr1:70883708 chr1:70883708 synonymous SNV . 0 21 hm7G_associated_SNPs_5434 0 0 1 1 2 CTH chr1:70883620 3'AG 70883620 Downstream 89bp 5279 chr1 70883708 70883708 1 + G T UCEC 70883708 + 70883688 70883728 41 ATTATTTGTATGGATGATGTGTATGGAGGTAGGTGACCCCT ATTATTTGTATGGATGATGTTTATGGAGGTAGGTGACCCCT Direct Loss 0.938934930051461 0 NA NA prediction 0.877869860102922 Functional Loss - CTH ENSG00000116761 CDS Human protein_coding chr1:70883708 chr1:70883708 synonymous SNV . 0 21 hm7G_associated_SNPs_5434 0 0 1 1 2 CTH chr1:70883715 5'GT 70883715 Upstream 8bp 5280 chr14 96924468 96924468 1 + G C BLCA 96924468 + 96924448 96924488 41 GGGAAGGAGAAGAAGAAGTCGAAGAGGAAGAGGAGGAGGAG GGGAAGGAGAAGAAGAAGTCCAAGAGGAAGAGGAGGAGGAG Direct Loss 0.938934705407952 0 NA NA prediction 0.877869410815904 Functional Loss - AK7 ENSG00000140057 CDS Human protein_coding chr14:96924468 chr14:96924468 nonsynonymous SNV 0.168 1 21 hm7G_associated_SNPs_5435 0 0 0 0 2 AK7 chr14:96924420 3'AG 96924420 Downstream 49bp 5281 chr14 96924468 96924468 1 + G C BLCA 96924468 + 96924448 96924488 41 GGGAAGGAGAAGAAGAAGTCGAAGAGGAAGAGGAGGAGGAG GGGAAGGAGAAGAAGAAGTCCAAGAGGAAGAGGAGGAGGAG Direct Loss 0.938934705407952 0 NA NA prediction 0.877869410815904 Functional Loss - AK7 ENSG00000140057 CDS Human protein_coding chr14:96924468 chr14:96924468 nonsynonymous SNV 0.168 1 21 hm7G_associated_SNPs_5435 0 0 0 0 2 AK7 chr14:96924549 5'GT 96924549 Upstream 82bp 5282 chr8 117778967 117778967 1 + G A LGG 117778967 + 117778947 117778987 41 TCAGGCGGCGCTGCGGGGCCGCATCCAGCTGCGGGAGCAGC TCAGGCGGCGCTGCGGGGCCACATCCAGCTGCGGGAGCAGC Direct Loss 0.93892715182047 0 NA NA prediction 0.877854303640939 Functional Loss - UTP23 ENSG00000147679 CDS Human protein_coding chr8:117778967 chr8:117778967 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_5439 0 0 1 0 1 UTP23 chr8:117779030 5'GT 117779030 Upstream 64bp 5283 chr3 98507025 98507025 1 + G T CESC 98507025 + 98507005 98507045 41 TCACTGCTTTTAAGCCACATGATTTAAGGTGGCTGTTGGAA TCACTGCTTTTAAGCCACATTATTTAAGGTGGCTGTTGGAA Direct Loss 0.938923492674627 0 NA NA prediction 0.877846985349255 Functional Loss - ST3GAL6 ENSG00000064225 CDS Human protein_coding chr3:98507025 chr3:98507025 nonsynonymous SNV 0.941 4 21 hm7G_associated_SNPs_5440 0 0 1 0 1 ST3GAL6 chr3:98507066 5'GT 98507066 Upstream 42bp 5284 chr1 150246528 150246528 1 + G A BRCA 150246528 + 150246508 150246548 41 AAGAAAGACTGGGAGAGGATGAATATTATCAGGTGGTCTAT AAGAAAGACTGGGAGAGGATAAATATTATCAGGTGGTCTAT Direct Loss 0.938921877193052 0 NA NA prediction 0.877843754386105 Functional Loss - C1orf54 ENSG00000118292 CDS Human protein_coding chr1:150246528 chr1:150246528 nonsynonymous SNV 0.859 0 21 hm7G_associated_SNPs_5441 0 0 0 0 2 C1orf54 chr1:150246490 3'AG 150246490 Downstream 39bp 5285 chr1 150246528 150246528 1 + G A BRCA 150246528 + 150246508 150246548 41 AAGAAAGACTGGGAGAGGATGAATATTATCAGGTGGTCTAT AAGAAAGACTGGGAGAGGATAAATATTATCAGGTGGTCTAT Direct Loss 0.938921877193052 0 NA NA prediction 0.877843754386105 Functional Loss - C1orf54 ENSG00000118292 CDS Human protein_coding chr1:150246528 chr1:150246528 nonsynonymous SNV 0.859 0 21 hm7G_associated_SNPs_5441 0 0 0 0 2 C1orf54 chr1:150246573 5'GT 150246573 Upstream 46bp 5286 chr15 75189912 75189912 1 + G A BLCA 75189912 + 75189892 75189932 41 GACTCTGCCAGCATCCTCCTGATGGTACAGGGGACAGTAAT GACTCTGCCAGCATCCTCCTAATGGTACAGGGGACAGTAAT Direct Loss 0.938921110454237 0 NA NA prediction 0.877842220908474 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75189912 chr15:75189912 synonymous SNV . 0 21 hm7G_associated_SNPs_5442 0 0 1 2 1 MPI chr15:75189853 3'AG 75189853 Downstream 60bp 5287 chr11 71932021 71932021 1 + G A rs116699117 71932021 + 71932001 71932041 41 TGGGACCACTGCGGCAAGATGGAGCCCGCCTGCAAGCGCCA TGGGACCACTGCGGCAAGATAGAGCCCGCCTGCAAGCGCCA Direct Loss 0.938916074445994 0 NA NA prediction 0.877832148891988 Functional Loss - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71932021 chr11:71932021 nonsynonymous SNV 0.444 0 21 hm7G_associated_SNPs_5444 0 0 0 0 1 FOLR2 chr11:71932102 5'GT 71932102 Upstream 82bp 5288 chr7 39730117 39730117 1 + G A LUSC 39730117 + 39730097 39730137 41 AATTAGAGACAACTACTTCCGAAGTGGGGAGGGGTTCCTCT AATTAGAGACAACTACTTCCAAAGTGGGGAGGGGTTCCTCT Direct Loss 0.938915248652299 0 NA NA prediction 0.877830497304599 Functional Loss - RALA ENSG00000006451 CDS Human protein_coding chr7:39730117 chr7:39730117 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5445 0 0 1 0 1 RALA chr7:39730189 5'GT 39730189 Upstream 73bp 5289 chr10 104486511 104486511 1 + G A UCEC 104486511 + 104486491 104486531 41 CCCGCACTGTCTTTGTATCTGAGCGGGAGCTGGACTGGGCC CCCGCACTGTCTTTGTATCTAAGCGGGAGCTGGACTGGGCC Direct Loss 0.938914204578068 0 NA NA prediction 0.877828409156136 Functional Loss - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104486511 chr10:104486511 nonsynonymous SNV 0.105 1 21 hm7G_associated_SNPs_5446 0 0 1 0 1 SFXN2 chr10:104486554 5'GT 104486554 Upstream 44bp 5290 chr10 54074801 54074801 1 + G A PRAD 54074801 + 54074781 54074821 41 CAGGAAGCGCCGAAAACGCTGCATGCGTCACGCTATGTGCT CAGGAAGCGCCGAAAACGCTACATGCGTCACGCTATGTGCT Direct Loss 0.938903107949306 0 NA NA prediction 0.877806215898612 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074801 chr10:54074801 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5447 0 0 1 0 1 DKK1 chr10:54074845 5'GT 54074845 Upstream 45bp 5291 chr11 3657364 3657364 1 + G A rs142980476 3657364 + 3657344 3657384 41 CCAGGGCAGGGGCTGTGCCTGGGGAGGGAGAGCGTGGATCC CCAGGGCAGGGGCTGTGCCTAGGGAGGGAGAGCGTGGATCC Direct Loss 0.938891670973339 0 NA NA prediction 0.877783341946679 Functional Loss - TRPC2 ENSG00000182048 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3657364 chr11:3657364 . . 0 21 hm7G_associated_SNPs_5449 0 0 0 0 1 TRPC2 chr11:3657337 3'AG 3657337 Downstream 28bp 5292 chr13 48830448 48830448 1 + G A UCEC 48830448 + 48830428 48830468 41 TCTTTGAAGAAGAAGAAGTTGAATTTATCAGTGTGCCTGTC TCTTTGAAGAAGAAGAAGTTAAATTTATCAGTGTGCCTGTC Direct Loss 0.938874817436525 0 NA NA prediction 0.87774963487305 Functional Loss - ITM2B ENSG00000136156 CDS Human protein_coding chr13:48830448 chr13:48830448 nonsynonymous SNV 0.711 3 21 hm7G_associated_SNPs_5451 0 0 1 0 1 ITM2B chr13:48830519 5'GT 48830519 Upstream 72bp 5293 chr18 23731865 23731865 1 + G A SKCM 23731865 + 23731845 23731885 41 GTAATAAACAGAGCCCGTGTGGAGTGCCAGAGCCATAAGCT GTAATAAACAGAGCCCGTGTAGAGTGCCAGAGCCATAAGCT Direct Loss 0.938868822770426 0 NA NA prediction 0.877737645540851 Functional Loss - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23731865 chr18:23731865 synonymous SNV . 0 21 hm7G_associated_SNPs_5453 0 0 0 0 3 PSMA8 chr18:23731804 3'AG 23731804 Downstream 62bp 5294 chr18 23731865 23731865 1 + G A SKCM 23731865 + 23731845 23731885 41 GTAATAAACAGAGCCCGTGTGGAGTGCCAGAGCCATAAGCT GTAATAAACAGAGCCCGTGTAGAGTGCCAGAGCCATAAGCT Direct Loss 0.938868822770426 0 NA NA prediction 0.877737645540851 Functional Loss - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23731865 chr18:23731865 synonymous SNV . 0 21 hm7G_associated_SNPs_5453 0 0 0 0 3 PSMA8 chr18:23731822 3'AG 23731822 Downstream 44bp 5295 chr18 23731865 23731865 1 + G A SKCM 23731865 + 23731845 23731885 41 GTAATAAACAGAGCCCGTGTGGAGTGCCAGAGCCATAAGCT GTAATAAACAGAGCCCGTGTAGAGTGCCAGAGCCATAAGCT Direct Loss 0.938868822770426 0 NA NA prediction 0.877737645540851 Functional Loss - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23731865 chr18:23731865 synonymous SNV . 0 21 hm7G_associated_SNPs_5453 0 0 0 0 3 PSMA8 chr18:23731946 5'GT 23731946 Upstream 82bp 5296 chr15 45898632 45898632 1 + G T UCEC 45898632 + 45898612 45898652 41 AGCAGAAGAGGCAAAAAGAAGAGTTGGAAAGGGAGCAGCAA AGCAGAAGAGGCAAAAAGAATAGTTGGAAAGGGAGCAGCAA Direct Loss 0.93886704020649 0 NA NA prediction 0.877734080412981 Functional Loss - BLOC1S6 ENSG00000104164 CDS Human protein_coding chr15:45898632 chr15:45898632 stopgain 0.998 1 21 hm7G_associated_SNPs_5454 0 0 1 2 1 BLOC1S6 chr15:45898593 3'AG 45898593 Downstream 40bp 5297 chr10 72509663 72509663 1 + G A SKCM 72509663 + 72509643 72509683 41 ACCTTCACCGCCATGGGCCTGGAGTGGGAGGATGCGGTGGA ACCTTCACCGCCATGGGCCTAGAGTGGGAGGATGCGGTGGA Direct Loss 0.938858259910349 0 NA NA prediction 0.877716519820698 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72509663 chr10:72509663 synonymous SNV . 0 21 hm7G_associated_SNPs_5455 0 0 1 0 2 ADAMTS14 chr10:72509578 3'AG 72509578 Downstream 86bp 5298 chr10 72509663 72509663 1 + G A SKCM 72509663 + 72509643 72509683 41 ACCTTCACCGCCATGGGCCTGGAGTGGGAGGATGCGGTGGA ACCTTCACCGCCATGGGCCTAGAGTGGGAGGATGCGGTGGA Direct Loss 0.938858259910349 0 NA NA prediction 0.877716519820698 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72509663 chr10:72509663 synonymous SNV . 0 21 hm7G_associated_SNPs_5455 0 0 1 0 2 ADAMTS14 chr10:72509741 5'GT 72509741 Upstream 79bp 5299 chr14 90734636 90734636 1 + G T HNSC 90734636 + 90734616 90734656 41 TCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTACCTA TCTTGAGAGTGGTTGGCTCTTAACTTATTCAGAAGTACCTA Direct Loss 0.938853392923809 0 NA NA prediction 0.877706785847618 Functional Loss - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90734636 chr14:90734636 stopgain 0.998 1 21 hm7G_associated_SNPs_5457 0 0 0 0 1 PSMC1 chr14:90734568 3'AG 90734568 Downstream 69bp 5300 chr19 7518537 7518537 1 + G T UCEC 7518537 + 7518517 7518557 41 ACCTTCCGCAAGGAAGACATGCTTCAGCGGCAGCTCCACCT ACCTTCCGCAAGGAAGACATTCTTCAGCGGCAGCTCCACCT Direct Loss 0.938850433204155 0 NA NA prediction 0.87770086640831 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7518537 chr19:7518537 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5458 0 0 0 0 1 ARHGEF18 chr19:7518601 5'GT 7518601 Upstream 65bp 5301 chr22 37449226 37449226 1 + G A rs541254320 37449226 + 37449206 37449246 41 CGGCATGGCAAGCTGGTGCTGGACAAGGACATGGCTGAGGA CGGCATGGCAAGCTGGTGCTAGACAAGGACATGGCTGAGGA Direct Loss 0.938849835420103 0 NA NA prediction 0.877699670840205 Functional Loss - KCTD17 ENSG00000100379 CDS Human protein_coding chr22:37449226 chr22:37449226 synonymous SNV . 0 21 hm7G_associated_SNPs_5459 0 0 1 0 1 KCTD17 chr22:37449140 3'AG 37449140 Downstream 87bp 5302 chr15 20496624 20496624 1 + G A SKCM 20496624 + 20496604 20496644 41 CTAGTCGAAAGTGGCCTCATGAAGGGGAAGCCGAGGGTGCC CTAGTCGAAAGTGGCCTCATAAAGGGGAAGCCGAGGGTGCC Direct Loss 0.938848829269488 0 NA NA prediction 0.877697658538976 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20496624 chr15:20496624 . . 0 21 hm7G_associated_SNPs_5460 0 0 0 0 1 CHEK2P2 chr15:20496597 3'AG 20496597 Downstream 28bp 5303 chr1 3691940 3691940 1 + G A COAD 3691940 + 3691920 3691960 41 CCGCTGCAGCCCCACAGCATGCAGCCCCAGGAGAGCCACGT CCGCTGCAGCCCCACAGCATACAGCCCCAGGAGAGCCACGT Direct Loss 0.938830345547592 0 NA NA prediction 0.877660691095183 Functional Loss - SMIM1 ENSG00000235169 CDS Human protein_coding chr1:3691940 chr1:3691940 nonsynonymous SNV 0.557 3 21 hm7G_associated_SNPs_5464 0 0 1 0 1 SMIM1 chr1:3691863 3'AG 3691863 Downstream 78bp 5304 chr22 29684693 29684693 1 + G C BLCA 29684693 + 29684673 29684713 41 ACCGGAGCATGAGTGGCCCTGATAACCGGGGCAGGGGAAGA ACCGGAGCATGAGTGGCCCTCATAACCGGGGCAGGGGAAGA Direct Loss 0.938828717251279 0 NA NA prediction 0.877657434502558 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29684693 chr22:29684693 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5465 0 0 1 0 2 EWSR1 chr22:29684595 3'AG 29684595 Downstream 99bp 5305 chr22 29684693 29684693 1 + G C BLCA 29684693 + 29684673 29684713 41 ACCGGAGCATGAGTGGCCCTGATAACCGGGGCAGGGGAAGA ACCGGAGCATGAGTGGCCCTCATAACCGGGGCAGGGGAAGA Direct Loss 0.938828717251279 0 NA NA prediction 0.877657434502558 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29684693 chr22:29684693 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5465 0 0 1 0 2 EWSR1 chr22:29684775 5'GT 29684775 Upstream 83bp 5306 chr4 187179200 187179200 1 + G T SARC 187179200 + 187179180 187179220 41 TTCAGGTGGTCCCTTAGTTTGCAAACACAATGGAATGTGGC TTCAGGTGGTCCCTTAGTTTTCAAACACAATGGAATGTGGC Direct Loss 0.938817127506635 0 NA NA prediction 0.877634255013269 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187179200 chr4:187179200 nonsynonymous SNV 0.893 5 21 hm7G_associated_SNPs_5467 0 0 0 0 1 KLKB1 chr4:187179175 3'AG 187179175 Downstream 26bp 5307 chr11 12376376 12376376 1 + G T UCEC 12376376 + 12376356 12376396 41 CATCAAAGCAGACTGGAGCAGAAACTGAGAGAGAAAATGCT CATCAAAGCAGACTGGAGCATAAACTGAGAGAGAAAATGCT Direct Loss 0.938814563170501 0 NA NA prediction 0.877629126341003 Functional Loss - MICALCL ENSG00000133808 CDS Human protein_coding chr11:12376376 chr11:12376376 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5468 0 0 0 0 1 MICALCL chr11:12376331 3'AG 12376331 Downstream 46bp 5308 chr8 86388030 86388030 1 + G T LUSC 86388030 + 86388010 86388050 41 TTTATGTTTTTCTTTAGGTTGGCAGCGCTAAACCGGGCCTT TTTATGTTTTTCTTTAGGTTTGCAGCGCTAAACCGGGCCTT Direct Loss 0.938811768052759 0 NA NA prediction 0.877623536105517 Functional Loss - CA2 ENSG00000104267 CDS Human protein_coding chr8:86388030 chr8:86388030 nonsynonymous SNV 0.191 2 21 hm7G_associated_SNPs_5469 0 0 1 0 2 CA2 chr8:86388027 3'AG 86388027 Downstream 4bp 5309 chr8 86388030 86388030 1 + G T LUSC 86388030 + 86388010 86388050 41 TTTATGTTTTTCTTTAGGTTGGCAGCGCTAAACCGGGCCTT TTTATGTTTTTCTTTAGGTTTGCAGCGCTAAACCGGGCCTT Direct Loss 0.938811768052759 0 NA NA prediction 0.877623536105517 Functional Loss - CA2 ENSG00000104267 CDS Human protein_coding chr8:86388030 chr8:86388030 nonsynonymous SNV 0.191 2 21 hm7G_associated_SNPs_5469 0 0 1 0 2 CA2 chr8:86388089 5'GT 86388089 Upstream 60bp 5310 chr17 38122561 38122561 1 + G A COAD 38122561 + 38122541 38122581 41 TAAGAATATGCTGGACACCCGAGTGGAGGGAGATGTGGATG TAAGAATATGCTGGACACCCAAGTGGAGGGAGATGTGGATG Direct Loss 0.938800362742075 0 NA NA prediction 0.87760072548415 Functional Loss - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38122561 chr17:38122561 nonsynonymous SNV 0.991 0 21 hm7G_associated_SNPs_5470 0 0 0 0 1 GSDMA chr17:38122513 3'AG 38122513 Downstream 49bp 5311 chr11 9452461 9452461 1 + G T UCEC 9452461 + 9452441 9452481 41 TAATCCAGACGGGGCCAGATGAAGAAGGTAGTGATGACAAA TAATCCAGACGGGGCCAGATTAAGAAGGTAGTGATGACAAA Direct Loss 0.938798335453205 0 NA NA prediction 0.877596670906411 Functional Loss - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9452461 chr11:9452461 stopgain 1.000 1 21 hm7G_associated_SNPs_5471 0 0 1 0 2 IPO7 chr11:9452422 3'AG 9452422 Downstream 40bp 5312 chr11 9452461 9452461 1 + G T UCEC 9452461 + 9452441 9452481 41 TAATCCAGACGGGGCCAGATGAAGAAGGTAGTGATGACAAA TAATCCAGACGGGGCCAGATTAAGAAGGTAGTGATGACAAA Direct Loss 0.938798335453205 0 NA NA prediction 0.877596670906411 Functional Loss - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9452461 chr11:9452461 stopgain 1.000 1 21 hm7G_associated_SNPs_5471 0 0 1 0 2 IPO7 chr11:9452550 5'GT 9452550 Upstream 90bp 5313 chr17 34161584 34161584 1 + G A KIRC 34161584 + 34161564 34161604 41 CCTTAGGTCACAGGGATTATGGACCCAGAACAGATGCTGGT CCTTAGGTCACAGGGATTATAGACCCAGAACAGATGCTGGT Direct Loss 0.938794081286218 0 NA NA prediction 0.877588162572436 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34161584 chr17:34161584 stopgain 1.000 3 21 hm7G_associated_SNPs_5472 0 0 1 0 2 TAF15 chr17:34161570 3'AG 34161570 Downstream 15bp 5314 chr17 34161584 34161584 1 + G A KIRC 34161584 + 34161564 34161604 41 CCTTAGGTCACAGGGATTATGGACCCAGAACAGATGCTGGT CCTTAGGTCACAGGGATTATAGACCCAGAACAGATGCTGGT Direct Loss 0.938794081286218 0 NA NA prediction 0.877588162572436 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34161584 chr17:34161584 stopgain 1.000 3 21 hm7G_associated_SNPs_5472 0 0 1 0 2 TAF15 chr17:34161602 5'GT 34161602 Upstream 19bp 5315 chr10 23399191 23399191 1 + G T BLCA 23399191 + 23399171 23399211 41 CCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGAAT CCTTTCAGTGGGATCTACCTTAATAACAAGGAAGCAGGAAT Direct Loss 0.938790061714038 0 NA NA prediction 0.877580123428077 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399191 chr10:23399191 synonymous SNV . 0 21 hm7G_associated_SNPs_5473 0 0 0 0 2 MSRB2 chr10:23399171 3'AG 23399171 Downstream 21bp 5316 chr10 23399191 23399191 1 + G T BLCA 23399191 + 23399171 23399211 41 CCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGAAT CCTTTCAGTGGGATCTACCTTAATAACAAGGAAGCAGGAAT Direct Loss 0.938790061714038 0 NA NA prediction 0.877580123428077 Functional Loss - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399191 chr10:23399191 synonymous SNV . 0 21 hm7G_associated_SNPs_5473 0 0 0 0 2 MSRB2 chr10:23399247 5'GT 23399247 Upstream 57bp 5317 chr2 89037542 89037542 1 + G C LUAD 89037542 + 89037522 89037562 41 TTATCTTGGACTGGAAGTTTGACCGGGTACACAAATGGAGT TTATCTTGGACTGGAAGTTTCACCGGGTACACAAATGGAGT Direct Loss 0.938788179730432 0 NA NA prediction 0.877576359460863 Functional Loss - RPIA ENSG00000153574 CDS Human protein_coding chr2:89037542 chr2:89037542 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5474 0 0 1 0 1 RPIA chr2:89037593 5'GT 89037593 Upstream 52bp 5318 chr17 33510499 33510499 1 + G T LUAD 33510499 + 33510479 33510519 41 CGGCTGAAGCTGGTGGTGCTGCTCTGCGGGGAGGATGATGA CGGCTGAAGCTGGTGGTGCTTCTCTGCGGGGAGGATGATGA Direct Loss 0.938767992759648 0 NA NA prediction 0.877535985519296 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33510499 chr17:33510499 synonymous SNV . 0 21 hm7G_associated_SNPs_5480 0 0 0 0 1 UNC45B chr17:33510446 3'AG 33510446 Downstream 54bp 5319 chr12 121013479 121013479 1 + G T SARC 121013479 + 121013459 121013499 41 CAGATGTGTGGCCCAAAACTGCTCCAAAGAAAGGTGAGGAT CAGATGTGTGGCCCAAAACTTCTCCAAAGAAAGGTGAGGAT Direct Loss 0.938767844869694 0 NA NA prediction 0.877535689739388 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121013479 chr12:121013479 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_5481 0 0 1 0 2 RNF10 chr12:121013434 3'AG 121013434 Downstream 46bp 5320 chr12 121013479 121013479 1 + G T SARC 121013479 + 121013459 121013499 41 CAGATGTGTGGCCCAAAACTGCTCCAAAGAAAGGTGAGGAT CAGATGTGTGGCCCAAAACTTCTCCAAAGAAAGGTGAGGAT Direct Loss 0.938767844869694 0 NA NA prediction 0.877535689739388 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121013479 chr12:121013479 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_5481 0 0 1 0 2 RNF10 chr12:121013491 5'GT 121013491 Upstream 13bp 5321 chr15 74625132 74625132 1 + G A SKCM 74625132 + 74625112 74625152 41 GCGAAGCTGCGGACGGAGCTGGATAAGAACCGCCACCAGCA GCGAAGCTGCGGACGGAGCTAGATAAGAACCGCCACCAGCA Direct Loss 0.938766752621374 0 NA NA prediction 0.877533505242748 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74625132 chr15:74625132 synonymous SNV . 0 21 hm7G_associated_SNPs_5482 0 0 0 0 1 CCDC33 chr15:74625186 5'GT 74625186 Upstream 55bp 5322 chr12 31819067 31819067 1 + G T UCEC 31819067 + 31819047 31819087 41 TCAGAGGAAAATCTGTATTAGATCTTGGGAGTGGATGTGGA TCAGAGGAAAATCTGTATTATATCTTGGGAGTGGATGTGGA Direct Loss 0.938761681629045 0 NA NA prediction 0.877523363258089 Functional Loss - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31819067 chr12:31819067 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5483 0 0 0 0 2 ETFBKMT chr12:31819021 3'AG 31819021 Downstream 47bp 5323 chr12 31819067 31819067 1 + G T UCEC 31819067 + 31819047 31819087 41 TCAGAGGAAAATCTGTATTAGATCTTGGGAGTGGATGTGGA TCAGAGGAAAATCTGTATTATATCTTGGGAGTGGATGTGGA Direct Loss 0.938761681629045 0 NA NA prediction 0.877523363258089 Functional Loss - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31819067 chr12:31819067 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5483 0 0 0 0 2 ETFBKMT chr12:31819151 5'GT 31819151 Upstream 85bp 5324 chr1 47834186 47834186 1 + G A BLCA 47834186 + 47834166 47834206 41 CAGGAGAGCTGCTTCGTGATGAAAGGAAGAACCCAGATTCA CAGGAGAGCTGCTTCGTGATAAAAGGAAGAACCCAGATTCA Direct Loss 0.938760585994377 0 NA NA prediction 0.877521171988753 Functional Loss - CMPK1 ENSG00000162368 CDS Human protein_coding chr1:47834186 chr1:47834186 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5484 0 0 1 0 1 CMPK1 chr1:47834141 3'AG 47834141 Downstream 46bp 5325 chr6 139495585 139495585 1 + G A COAD 139495585 + 139495565 139495605 41 AGGGGTTCACAAGATCATCTGCATCAAGTGTAAGTCACGGT AGGGGTTCACAAGATCATCTACATCAAGTGTAAGTCACGGT Direct Loss 0.938758381719134 0 NA NA prediction 0.877516763438268 Functional Loss - HECA ENSG00000112406 CDS Human protein_coding chr6:139495585 chr6:139495585 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5486 0 0 1 0 2 HECA chr6:139495522 3'AG 139495522 Downstream 64bp 5326 chr6 139495585 139495585 1 + G A COAD 139495585 + 139495565 139495605 41 AGGGGTTCACAAGATCATCTGCATCAAGTGTAAGTCACGGT AGGGGTTCACAAGATCATCTACATCAAGTGTAAGTCACGGT Direct Loss 0.938758381719134 0 NA NA prediction 0.877516763438268 Functional Loss - HECA ENSG00000112406 CDS Human protein_coding chr6:139495585 chr6:139495585 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5486 0 0 1 0 2 HECA chr6:139495676 5'GT 139495676 Upstream 92bp 5327 chrX 47518577 47518577 1 + G T UCEC 47518577 + 47518557 47518597 41 TCCGGGTGGCGCGGGTGAATGACGTAAGTGGCAAGCGCGCT TCCGGGTGGCGCGGGTGAATTACGTAAGTGGCAAGCGCGCT Direct Loss 0.938749656199502 0 NA NA prediction 0.877499312399005 Functional Loss - UXT-AS1 ENSG00000267064 ncRNA_exonic Human antisense chrX:47518577 chrX:47518577 . . 0 21 hm7G_associated_SNPs_5488 0 0 0 0 1 UXT-AS1 chrX:47518579 5'GT 47518579 Upstream 3bp 5328 chr19 35769682 35769682 1 + G A UCEC 35769682 + 35769662 35769702 41 AGACTGTAACGCAGACAACAGCAAGACGGGAGCGGTGAGCA AGACTGTAACGCAGACAACAACAAGACGGGAGCGGTGAGCA Direct Loss 0.938747500663123 0 NA NA prediction 0.877495001326245 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769682 chr19:35769682 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_5489 0 0 1 0 2 USF2 chr19:35769601 3'AG 35769601 Downstream 82bp 5329 chr19 35769682 35769682 1 + G A UCEC 35769682 + 35769662 35769702 41 AGACTGTAACGCAGACAACAGCAAGACGGGAGCGGTGAGCA AGACTGTAACGCAGACAACAACAAGACGGGAGCGGTGAGCA Direct Loss 0.938747500663123 0 NA NA prediction 0.877495001326245 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769682 chr19:35769682 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_5489 0 0 1 0 2 USF2 chr19:35769695 5'GT 35769695 Upstream 14bp 5330 chr9 131196734 131196734 1 + G T UCEC 131196734 + 131196714 131196754 41 CCTGAGAAGGAGACGGCCGTGGAGGGGCTGCCGGGCCTGGT CCTGAGAAGGAGACGGCCGTTGAGGGGCTGCCGGGCCTGGT Direct Loss 0.938747438978383 0 NA NA prediction 0.877494877956765 Functional Loss - CERCAM ENSG00000167123 CDS Human protein_coding chr9:131196734 chr9:131196734 synonymous SNV . 0 21 hm7G_associated_SNPs_5490 0 0 1 0 1 CERCAM chr9:131196689 3'AG 131196689 Downstream 46bp 5331 chr13 53254252 53254252 1 + G T LUAD 53254252 + 53254232 53254272 41 TTCAGCAGATCTATTCAGATGGTTCTGATGAAGTGAAACGT TTCAGCAGATCTATTCAGATTGTTCTGATGAAGTGAAACGT Direct Loss 0.938743621430872 0 NA NA prediction 0.877487242861744 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53254252 chr13:53254252 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5491 0 0 1 0 1 SUGT1 chr13:53254290 5'GT 53254290 Upstream 39bp 5332 chr4 156835522 156835522 1 + G A COAD 156835522 + 156835502 156835542 41 GAACAGGTGGCTGAATTTCAGAAGCAAAAAGAGGTGCTACT GAACAGGTGGCTGAATTTCAAAAGCAAAAAGAGGTGCTACT Direct Loss 0.938743543757626 0 NA NA prediction 0.877487087515252 Functional Loss - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156835522 chr4:156835522 synonymous SNV . 0 21 hm7G_associated_SNPs_5492 0 0 0 0 1 TDO2 chr4:156835475 3'AG 156835475 Downstream 48bp 5333 chr10 102798404 102798404 1 + G A STAD 102798404 + 102798384 102798424 41 TTCTGTCTCTCCACAGCGCCGCCCCTGGCTGGGGGCACCCC TTCTGTCTCTCCACAGCGCCACCCCTGGCTGGGGGCACCCC Direct Loss 0.938741906689832 0 NA NA prediction 0.877483813379663 Functional Loss - SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798404 chr10:102798404 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_5493 0 0 1 0 2 SFXN3 chr10:102798400 3'AG 102798400 Downstream 5bp 5334 chr10 102798404 102798404 1 + G A STAD 102798404 + 102798384 102798424 41 TTCTGTCTCTCCACAGCGCCGCCCCTGGCTGGGGGCACCCC TTCTGTCTCTCCACAGCGCCACCCCTGGCTGGGGGCACCCC Direct Loss 0.938741906689832 0 NA NA prediction 0.877483813379663 Functional Loss - SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102798404 chr10:102798404 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_5493 0 0 1 0 2 SFXN3 chr10:102798449 5'GT 102798449 Upstream 46bp 5335 chr1 38027764 38027764 1 + G A ESCA 38027764 + 38027744 38027784 41 ATGTGAAGCCACTGAGAAGCGGGAGAGCGAGAGGCGGCAGG ATGTGAAGCCACTGAGAAGCAGGAGAGCGAGAGGCGGCAGG Direct Loss 0.938734704829157 0 NA NA prediction 0.877469409658314 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027764 chr1:38027764 nonsynonymous SNV 0.986 2 21 hm7G_associated_SNPs_5494 0 0 0 0 2 DNALI1 chr1:38027682 3'AG 38027682 Downstream 83bp 5336 chr1 38027764 38027764 1 + G A ESCA 38027764 + 38027744 38027784 41 ATGTGAAGCCACTGAGAAGCGGGAGAGCGAGAGGCGGCAGG ATGTGAAGCCACTGAGAAGCAGGAGAGCGAGAGGCGGCAGG Direct Loss 0.938734704829157 0 NA NA prediction 0.877469409658314 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027764 chr1:38027764 nonsynonymous SNV 0.986 2 21 hm7G_associated_SNPs_5494 0 0 0 0 2 DNALI1 chr1:38027846 5'GT 38027846 Upstream 83bp 5337 chr3 193854273 193854273 1 + G A CESC 193854273 + 193854253 193854293 41 AAAGACAGCATCTGAGCACAGAAAGGTAAGGGCGGTACCTG AAAGACAGCATCTGAGCACAAAAAGGTAAGGGCGGTACCTG Direct Loss 0.93873336349531 0 NA NA prediction 0.87746672699062 Functional Loss - HES1 ENSG00000114315 CDS Human protein_coding chr3:193854273 chr3:193854273 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5495 0 0 1 0 1 HES1 chr3:193854277 5'GT 193854277 Upstream 5bp 5338 chr5 140038688 140038688 1 + G A COAD 140038688 + 140038668 140038708 41 ACGAGAGCGAGAGCGGGACCGAGAGAGAGAAGAGGAAAAGA ACGAGAGCGAGAGCGGGACCAAGAGAGAGAAGAGGAAAAGA Direct Loss 0.938730847753646 0 NA NA prediction 0.877461695507291 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140038688 chr5:140038688 nonsynonymous SNV 0.239 1 21 hm7G_associated_SNPs_5496 0 0 1 0 1 IK chr5:140038749 5'GT 140038749 Upstream 62bp 5339 chr2 101883145 101883145 1 + G A READ 101883145 + 101883125 101883165 41 TCTGGTGTATTTAGCTACTTGGTGAGTTGGAAAAAGACCCC TCTGGTGTATTTAGCTACTTAGTGAGTTGGAAAAAGACCCC Direct Loss 0.938719999204605 0 NA NA prediction 0.877439998409211 Functional Loss - CNOT11 ENSG00000158435 CDS Human protein_coding chr2:101883145 chr2:101883145 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5497 0 0 1 0 1 CNOT11 chr2:101883139 3'AG 101883139 Downstream 7bp 5340 chr11 20398173 20398173 1 + G A COAD 20398173 + 20398153 20398193 41 TATGTGCTGAAGTCTGCAGAGCTGGCAAAAGCTGGAGGGTG TATGTGCTGAAGTCTGCAGAACTGGCAAAAGCTGGAGGGTG Direct Loss 0.938718486928498 0 NA NA prediction 0.877436973856996 Functional Loss - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20398173 chr11:20398173 synonymous SNV . 0 21 hm7G_associated_SNPs_5498 0 0 1 0 2 HTATIP2 chr11:20398126 3'AG 20398126 Downstream 48bp 5341 chr11 20398173 20398173 1 + G A COAD 20398173 + 20398153 20398193 41 TATGTGCTGAAGTCTGCAGAGCTGGCAAAAGCTGGAGGGTG TATGTGCTGAAGTCTGCAGAACTGGCAAAAGCTGGAGGGTG Direct Loss 0.938718486928498 0 NA NA prediction 0.877436973856996 Functional Loss - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20398173 chr11:20398173 synonymous SNV . 0 21 hm7G_associated_SNPs_5498 0 0 1 0 2 HTATIP2 chr11:20398263 5'GT 20398263 Upstream 91bp 5342 chr12 75893701 75893701 1 - C T UCEC 75893701 - 75893681 75893721 41 AACTAAAATTGATGTGGCCAGCATCAAGGAAAAGGTTAAGA AACTAAAATTGATGTGGCCAACATCAAGGAAAAGGTTAAGA Direct Loss 0.938712331115576 0 NA NA prediction 0.877424662231151 Functional Loss - KRR1 ENSG00000111615 CDS Human protein_coding chr12:75893701 chr12:75893701 nonsynonymous SNV 0.978 0 21 hm7G_associated_SNPs_5500 0 0 1 0 1 KRR1 chr12:75893731 3'AG 75893731 Downstream 31bp 5343 chr4 56233783 56233783 1 + G A rs371637881 56233783 + 56233763 56233803 41 ACAGGGAAAAATCTATTGATGCAAGCACGGTGGTTCCATAT ACAGGGAAAAATCTATTGATACAAGCACGGTGGTTCCATAT Direct Loss 0.938698897160482 0 NA NA prediction 0.877397794320963 Functional Loss - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56233783 chr4:56233783 nonsynonymous SNV 0.318 0 21 hm7G_associated_SNPs_5502 0 0 0 0 1 SRD5A3 chr4:56233755 3'AG 56233755 Downstream 29bp 5344 chr2 220149554 220149554 1 + G A UCEC 220149554 + 220149534 220149574 41 AGGCAGCTGGGAAGAAACCCGCAGGTGGGCGGGAGGCACAG AGGCAGCTGGGAAGAAACCCACAGGTGGGCGGGAGGCACAG Direct Loss 0.938675731737534 0 NA NA prediction 0.877351463475069 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220149554 chr2:220149554 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_5503 0 0 1 0 1 DNAJB2 chr2:220149557 5'GT 220149557 Upstream 4bp 5345 chr9 12709068 12709068 1 + G A rs34060600 12709068 + 12709048 12709088 41 TTTGGGACTGCTTCTTATCTGATTCGTGCCAGACGCAGTAT TTTGGGACTGCTTCTTATCTAATTCGTGCCAGACGCAGTAT Direct Loss 0.938664555440622 0 NA NA prediction 0.877329110881245 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12709068 chr9:12709068 synonymous SNV . 0 21 hm7G_associated_SNPs_5504 1 0 0 0 1 TYRP1 chr9:12708977 3'AG 12708977 Downstream 92bp 5346 chr20 31652609 31652609 1 + G T SARC 31652609 + 31652589 31652629 41 AACACCACGTTTGGACTCCTGCAGACCAACGGCGCCCTCGA AACACCACGTTTGGACTCCTTCAGACCAACGGCGCCCTCGA Direct Loss 0.93865815845361 0 NA NA prediction 0.87731631690722 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652609 chr20:31652609 synonymous SNV . 0 21 hm7G_associated_SNPs_5506 0 0 0 0 1 BPIFB3 chr20:31652651 5'GT 31652651 Upstream 43bp 5347 chr14 105167744 105167744 1 + G A rs62638758 105167744 + 105167724 105167764 41 CAGCGCAAGTGGGCAGCGCTGAAGGAGAAGCTGGGGCCACA CAGCGCAAGTGGGCAGCGCTAAAGGAGAAGCTGGGGCCACA Direct Loss 0.938655229009299 0 NA NA prediction 0.877310458018597 Functional Loss - INF2 ENSG00000203485 CDS Human protein_coding chr14:105167744 chr14:105167744 synonymous SNV . 0 21 hm7G_associated_SNPs_5507 2 0 1 0 1 INF2 chr14:105167694 3'AG 105167694 Downstream 51bp 5348 chr1 104297126 104297126 1 + G A ESCA 104297126 + 104297106 104297146 41 ATGTTTCAAAAATAGGAACTGGGGAGAAGGTTGGGGTTTCA ATGTTTCAAAAATAGGAACTAGGGAGAAGGTTGGGGTTTCA Direct Loss 0.93863848923857 0 NA NA prediction 0.877276978477141 Functional Loss - AMY1A;AMY1B;AMY1C ENSG00000187733 CDS Human protein_coding chr1:104297126 chr1:104297126 stopgain 0.992 1 21 hm7G_associated_SNPs_5510 0 0 0 0 1 AMY1A;AMY1B;AMY1C chr1:104297121 3'AG 104297121 Downstream 6bp 5349 chr8 145730035 145730035 1 + G A CESC 145730035 + 145730015 145730055 41 TCCGTGCCAACATCGGGGACGCACAGGCTATGGGGCAGAGG TCCGTGCCAACATCGGGGACACACAGGCTATGGGGCAGAGG Direct Loss 0.938635817696099 0 NA NA prediction 0.877271635392198 Functional Loss - GPT ENSG00000167701 CDS Human protein_coding chr8:145730035 chr8:145730035 nonsynonymous SNV 0.983 4 21 hm7G_associated_SNPs_5512 0 0 0 0 1 GPT chr8:145730076 5'GT 145730076 Upstream 42bp 5350 chr10 70694586 70694586 1 + G T LUAD 70694586 + 70694566 70694606 41 CTATATCCATCGCTCTGGACGCACAGGTAGAGCTGGACGGA CTATATCCATCGCTCTGGACTCACAGGTAGAGCTGGACGGA Direct Loss 0.93862907704933 0 NA NA prediction 0.87725815409866 Functional Loss - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70694586 chr10:70694586 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5513 0 0 1 0 2 DDX50 chr10:70694555 3'AG 70694555 Downstream 32bp 5351 chr10 70694586 70694586 1 + G T LUAD 70694586 + 70694566 70694606 41 CTATATCCATCGCTCTGGACGCACAGGTAGAGCTGGACGGA CTATATCCATCGCTCTGGACTCACAGGTAGAGCTGGACGGA Direct Loss 0.93862907704933 0 NA NA prediction 0.87725815409866 Functional Loss - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70694586 chr10:70694586 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5513 0 0 1 0 2 DDX50 chr10:70694674 5'GT 70694674 Upstream 89bp 5352 chr20 56728612 56728612 1 + G A LUAD 56728612 + 56728592 56728632 41 TTTTTCAGGAAATACCGTCTGAAGGCTGAATCGGAAGCACG TTTTTCAGGAAATACCGTCTAAAGGCTGAATCGGAAGCACG Direct Loss 0.938616654841029 0 NA NA prediction 0.877233309682058 Functional Loss - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56728612 chr20:56728612 synonymous SNV . 0 21 hm7G_associated_SNPs_5516 0 0 0 0 2 C20orf85 chr20:56728600 3'AG 56728600 Downstream 13bp 5353 chr20 56728612 56728612 1 + G A LUAD 56728612 + 56728592 56728632 41 TTTTTCAGGAAATACCGTCTGAAGGCTGAATCGGAAGCACG TTTTTCAGGAAATACCGTCTAAAGGCTGAATCGGAAGCACG Direct Loss 0.938616654841029 0 NA NA prediction 0.877233309682058 Functional Loss - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56728612 chr20:56728612 synonymous SNV . 0 21 hm7G_associated_SNPs_5516 0 0 0 0 2 C20orf85 chr20:56728681 5'GT 56728681 Upstream 70bp 5354 chr1 100152730 100152730 1 + G A SARC 100152730 + 100152710 100152750 41 ATGAAGAAAAAGAAGATGATGAACAAAATAGGAAAGGTATA ATGAAGAAAAAGAAGATGATAAACAAAATAGGAAAGGTATA Direct Loss 0.938615812246285 0 NA NA prediction 0.87723162449257 Functional Loss - PALMD ENSG00000099260 CDS Human protein_coding chr1:100152730 chr1:100152730 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5517 0 0 0 0 1 PALMD chr1:100152745 5'GT 100152745 Upstream 16bp 5355 chr2 26486298 26486298 1 + G A OV 26486298 + 26486278 26486318 41 CCAAACCCAATATAAGGAATGTTGTGGTGGTGGATGGTGTT CCAAACCCAATATAAGGAATATTGTGGTGGTGGATGGTGTT Direct Loss 0.938615605519708 0 NA NA prediction 0.877231211039416 Functional Loss - HADHB ENSG00000138029 CDS Human protein_coding chr2:26486298 chr2:26486298 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_5518 0 0 1 1 1 HADHB chr2:26486248 3'AG 26486248 Downstream 51bp 5356 chr4 110402907 110402907 1 + G T LUSC 110402907 + 110402887 110402927 41 TGTCATCAACTTCCGATGATGAGGAAGAGGAGGAGGAGGAT TGTCATCAACTTCCGATGATTAGGAAGAGGAGGAGGAGGAT Direct Loss 0.938603344961498 0 NA NA prediction 0.877206689922997 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110402907 chr4:110402907 stopgain 1.000 0 21 hm7G_associated_SNPs_5519 0 0 0 0 2 SEC24B chr4:110402833 3'AG 110402833 Downstream 75bp 5357 chr4 110402907 110402907 1 + G T LUSC 110402907 + 110402887 110402927 41 TGTCATCAACTTCCGATGATGAGGAAGAGGAGGAGGAGGAT TGTCATCAACTTCCGATGATTAGGAAGAGGAGGAGGAGGAT Direct Loss 0.938603344961498 0 NA NA prediction 0.877206689922997 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110402907 chr4:110402907 stopgain 1.000 0 21 hm7G_associated_SNPs_5519 0 0 0 0 2 SEC24B chr4:110402937 5'GT 110402937 Upstream 31bp 5358 chr1 11204735 11204735 1 + G A SKCM 11204735 + 11204715 11204755 41 TCCCACCAGATCTGGCGGATGATCTCTCGTCGCTCGGGGAC TCCCACCAGATCTGGCGGATAATCTCTCGTCGCTCGGGGAC Direct Loss 0.938603030581871 0 NA NA prediction 0.877206061163743 Functional Loss - MTOR ENSG00000198793 CDS Human protein_coding chr1:11204735 chr1:11204735 synonymous SNV . 0 21 hm7G_associated_SNPs_5520 0 0 0 0 1 MTOR chr1:11204724 3'AG 11204724 Downstream 12bp 5359 chr15 84909441 84909441 1 + G A UCEC 84909441 + 84909421 84909461 41 CTGGAGAGGCTGCGGGAGCTGGAGAGGCTGCGGGAGCTGGA CTGGAGAGGCTGCGGGAGCTAGAGAGGCTGCGGGAGCTGGA Direct Loss 0.93859669826572 0 NA NA prediction 0.877193396531441 Functional Loss - GOLGA6L4 ENSG00000184206 CDS Human protein_coding chr15:84909441 chr15:84909441 synonymous SNV . 0 21 hm7G_associated_SNPs_5522 0 0 0 0 2 GOLGA6L4 chr15:84909346 3'AG 84909346 Downstream 96bp 5360 chr15 84909441 84909441 1 + G A UCEC 84909441 + 84909421 84909461 41 CTGGAGAGGCTGCGGGAGCTGGAGAGGCTGCGGGAGCTGGA CTGGAGAGGCTGCGGGAGCTAGAGAGGCTGCGGGAGCTGGA Direct Loss 0.93859669826572 0 NA NA prediction 0.877193396531441 Functional Loss - GOLGA6L4 ENSG00000184206 CDS Human protein_coding chr15:84909441 chr15:84909441 synonymous SNV . 0 21 hm7G_associated_SNPs_5522 0 0 0 0 2 GOLGA6L4 chr15:84909534 5'GT 84909534 Upstream 94bp 5361 chr11 44074600 44074600 1 + G C LUSC 44074600 + 44074580 44074620 41 GACAAGTTAGAGGAAGCCCTGCTTGAAGCTAGGCTTGAGGT GACAAGTTAGAGGAAGCCCTCCTTGAAGCTAGGCTTGAGGT Direct Loss 0.938587884952729 0 NA NA prediction 0.877175769905457 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44074600 chr11:44074600 synonymous SNV . 0 21 hm7G_associated_SNPs_5523 0 0 0 0 2 ACCSL chr11:44074541 3'AG 44074541 Downstream 60bp 5362 chr11 44074600 44074600 1 + G C LUSC 44074600 + 44074580 44074620 41 GACAAGTTAGAGGAAGCCCTGCTTGAAGCTAGGCTTGAGGT GACAAGTTAGAGGAAGCCCTCCTTGAAGCTAGGCTTGAGGT Direct Loss 0.938587884952729 0 NA NA prediction 0.877175769905457 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44074600 chr11:44074600 synonymous SNV . 0 21 hm7G_associated_SNPs_5523 0 0 0 0 2 ACCSL chr11:44074618 5'GT 44074618 Upstream 19bp 5363 chr6 49483419 49483419 1 + G A CESC 49483419 + 49483399 49483439 41 AACCCCTTTCAAAAGGAAGTGGTGTTGGATTCATGGCCGGA AACCCCTTTCAAAAGGAAGTAGTGTTGGATTCATGGCCGGA Direct Loss 0.938581523311028 0 NA NA prediction 0.877163046622056 Functional Loss - GLYATL3 ENSG00000203972 CDS Human protein_coding chr6:49483419 chr6:49483419 synonymous SNV . 0 21 hm7G_associated_SNPs_5524 0 0 0 0 2 GLYATL3 chr6:49483366 3'AG 49483366 Downstream 54bp 5364 chr6 49483419 49483419 1 + G A CESC 49483419 + 49483399 49483439 41 AACCCCTTTCAAAAGGAAGTGGTGTTGGATTCATGGCCGGA AACCCCTTTCAAAAGGAAGTAGTGTTGGATTCATGGCCGGA Direct Loss 0.938581523311028 0 NA NA prediction 0.877163046622056 Functional Loss - GLYATL3 ENSG00000203972 CDS Human protein_coding chr6:49483419 chr6:49483419 synonymous SNV . 0 21 hm7G_associated_SNPs_5524 0 0 0 0 2 GLYATL3 chr6:49483473 5'GT 49483473 Upstream 55bp 5365 chr10 95552551 95552551 1 + G A SKCM 95552551 + 95552531 95552571 41 TGTAAACTGAAATGGCTAGTGGAATGGCTTGGCCACACCAA TGTAAACTGAAATGGCTAGTAGAATGGCTTGGCCACACCAA Direct Loss 0.938538373493052 0 NA NA prediction 0.877076746986104 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552551 chr10:95552551 synonymous SNV . 0 21 hm7G_associated_SNPs_5526 0 0 0 0 1 LGI1 chr10:95552500 3'AG 95552500 Downstream 52bp 5366 chr5 131995120 131995120 1 + G A UCEC 131995120 + 131995100 131995140 41 GCTCCCACAGGCTCCGCTCTGCAATGGCAGCATGGTATGGA GCTCCCACAGGCTCCGCTCTACAATGGCAGCATGGTATGGA Direct Loss 0.938534997546575 0 NA NA prediction 0.87706999509315 Functional Loss - IL13 ENSG00000169194 CDS Human protein_coding chr5:131995120 chr5:131995120 nonsynonymous SNV 0.873 4 21 hm7G_associated_SNPs_5527 0 0 0 0 2 IL13 chr5:131995110 3'AG 131995110 Downstream 11bp 5367 chr5 131995120 131995120 1 + G A UCEC 131995120 + 131995100 131995140 41 GCTCCCACAGGCTCCGCTCTGCAATGGCAGCATGGTATGGA GCTCCCACAGGCTCCGCTCTACAATGGCAGCATGGTATGGA Direct Loss 0.938534997546575 0 NA NA prediction 0.87706999509315 Functional Loss - IL13 ENSG00000169194 CDS Human protein_coding chr5:131995120 chr5:131995120 nonsynonymous SNV 0.873 4 21 hm7G_associated_SNPs_5527 0 0 0 0 2 IL13 chr5:131995163 5'GT 131995163 Upstream 44bp 5368 chr1 169096473 169096473 1 + G T UCEC 169096473 + 169096453 169096493 41 TATTTTTAGATGTGCCCAGTGAACCGAAAGAACGAGGAGAC TATTTTTAGATGTGCCCAGTTAACCGAAAGAACGAGGAGAC Direct Loss 0.938531290338771 0 NA NA prediction 0.877062580677541 Functional Loss - ATP1B1 ENSG00000143153 CDS Human protein_coding chr1:169096473 chr1:169096473 stopgain 0.007 0 21 hm7G_associated_SNPs_5529 0 0 1 0 1 ATP1B1 chr1:169096462 3'AG 169096462 Downstream 12bp 5369 chr2 28627051 28627051 1 + G A UCEC 28627051 + 28627031 28627071 41 ATCACGACCAGCCAGGACCTGCAGTGGATGGTGCAGCCCAC ATCACGACCAGCCAGGACCTACAGTGGATGGTGCAGCCCAC Direct Loss 0.938523818660851 0 NA NA prediction 0.877047637321702 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28627051 chr2:28627051 synonymous SNV . 0 21 hm7G_associated_SNPs_5531 0 0 0 0 1 FOSL2 chr2:28626974 3'AG 28626974 Downstream 78bp 5370 chr20 9498814 9498814 1 + G A LUAD 9498814 + 9498794 9498834 41 CCGCAGAAGACGGTCACCATGATCCTGTCTGCGGTCCACAT CCGCAGAAGACGGTCACCATAATCCTGTCTGCGGTCCACAT Direct Loss 0.938521325470365 0 NA NA prediction 0.87704265094073 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9498814 chr20:9498814 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5532 0 0 0 0 1 LAMP5 chr20:9498875 5'GT 9498875 Upstream 62bp 5371 chr12 124074976 124074976 1 + G A BRCA 124074976 + 124074956 124074996 41 ACAGGAATACATGGAAGTCCGGGAGAGAATACACAGAGCCA ACAGGAATACATGGAAGTCCAGGAGAGAATACACAGAGCCA Direct Loss 0.938514557716275 0 NA NA prediction 0.877029115432551 Functional Loss - TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074976 chr12:124074976 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5533 0 0 1 0 2 TMED2 chr12:124074889 3'AG 124074889 Downstream 88bp 5372 chr12 124074976 124074976 1 + G A BRCA 124074976 + 124074956 124074996 41 ACAGGAATACATGGAAGTCCGGGAGAGAATACACAGAGCCA ACAGGAATACATGGAAGTCCAGGAGAGAATACACAGAGCCA Direct Loss 0.938514557716275 0 NA NA prediction 0.877029115432551 Functional Loss - TMED2 ENSG00000086598 CDS Human protein_coding chr12:124074976 chr12:124074976 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5533 0 0 1 0 2 TMED2 chr12:124074996 5'GT 124074996 Upstream 21bp 5373 chr15 72978571 72978571 1 + G A GBM 72978571 + 72978551 72978591 41 GCGGTGGGCTGAGCTAAAATGGCTGAGGAGAGAGTCGCGAC GCGGTGGGCTGAGCTAAAATAGCTGAGGAGAGAGTCGCGAC Direct Loss 0.938485239687959 0 NA NA prediction 0.876970479375917 Functional Loss - BBS4 ENSG00000140463 CDS Human protein_coding chr15:72978571 chr15:72978571 nonsynonymous SNV 0.063 1 21 hm7G_associated_SNPs_5538 0 0 1 0 1 BBS4 chr15:72978592 5'GT 72978592 Upstream 22bp 5374 chr2 29245071 29245071 1 + G A SKCM 29245071 + 29245051 29245091 41 TGGGGTCTCCTGAATGGGAAGAAGAGGAGGAGATGGATCTT TGGGGTCTCCTGAATGGGAAAAAGAGGAGGAGATGGATCTT Direct Loss 0.938472618455482 0 NA NA prediction 0.876945236910963 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29245071 chr2:29245071 nonsynonymous SNV 0.827 3 21 hm7G_associated_SNPs_5539 0 0 0 0 1 TOGARAM2 chr2:29245024 3'AG 29245024 Downstream 48bp 5375 chr6 43488440 43488440 1 + G A HNSC 43488440 + 43488420 43488460 41 ACATCACCCTGCTTGAGCCCGTGGAAGGGGAGGCAGCTGAG ACATCACCCTGCTTGAGCCCATGGAAGGGGAGGCAGCTGAG Direct Loss 0.938472500910456 0 NA NA prediction 0.876945001820912 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488440 chr6:43488440 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5540 0 0 1 0 2 POLR1C chr6:43488363 3'AG 43488363 Downstream 78bp 5376 chr6 43488440 43488440 1 + G A HNSC 43488440 + 43488420 43488460 41 ACATCACCCTGCTTGAGCCCGTGGAAGGGGAGGCAGCTGAG ACATCACCCTGCTTGAGCCCATGGAAGGGGAGGCAGCTGAG Direct Loss 0.938472500910456 0 NA NA prediction 0.876945001820912 Functional Loss - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488440 chr6:43488440 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5540 0 0 1 0 2 POLR1C chr6:43488512 5'GT 43488512 Upstream 73bp 5377 chr11 64367184 64367184 1 + G A UCEC 64367184 + 64367164 64367204 41 ACCTTCTTCGGCCTGGCCCTGGACCTGCAGGCCCTGGGCAG ACCTTCTTCGGCCTGGCCCTAGACCTGCAGGCCCTGGGCAG Direct Loss 0.93847249225108 0 NA NA prediction 0.876944984502159 Functional Loss - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64367184 chr11:64367184 synonymous SNV . 0 21 hm7G_associated_SNPs_5541 0 0 0 0 1 SLC22A12 chr11:64367148 3'AG 64367148 Downstream 37bp 5378 chr14 58820404 58820404 1 + G A LUAD 58820404 + 58820384 58820424 41 CTGAAAGCAAATGTGACTCTGAAGGAGAGGAAGATGAGGAA CTGAAAGCAAATGTGACTCTAAAGGAGAGGAAGATGAGGAA Direct Loss 0.938468778813918 0 NA NA prediction 0.876937557627835 Functional Loss - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58820404 chr14:58820404 nonsynonymous SNV 0.977 4 21 hm7G_associated_SNPs_5544 0 0 1 0 1 ARID4A chr14:58820376 3'AG 58820376 Downstream 29bp 5379 chr1 86048431 86048431 1 + G A LUSC 86048431 + 86048411 86048451 41 TTTCTCTTACAGAAGGGCAAGAAATGCAGCAAGACCAAGAA TTTCTCTTACAGAAGGGCAAAAAATGCAGCAAGACCAAGAA Direct Loss 0.938467469671914 0 NA NA prediction 0.876934939343828 Functional Loss - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86048431 chr1:86048431 synonymous SNV . 0 21 hm7G_associated_SNPs_5545 0 0 1 0 1 CYR61 chr1:86048423 3'AG 86048423 Downstream 9bp 5380 chr20 37384544 37384544 1 + G A LUAD 37384544 + 37384524 37384564 41 GATCAGTTTCACAAAGCTCTGATAGAGCTGAATATGGACTC GATCAGTTTCACAAAGCTCTAATAGAGCTGAATATGGACTC Direct Loss 0.938453201965919 0 NA NA prediction 0.876906403931838 Functional Loss - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37384544 chr20:37384544 synonymous SNV . 0 21 hm7G_associated_SNPs_5546 0 0 1 0 1 ACTR5 chr20:37384500 3'AG 37384500 Downstream 45bp 5381 chr17 4701349 4701349 1 + G A OV 4701349 + 4701329 4701369 41 TGATGGTAAGGCAGTCCTTTGCCATTGGAGGCTCCGGGAGC TGATGGTAAGGCAGTCCTTTACCATTGGAGGCTCCGGGAGC Direct Loss 0.938442541993471 0 NA NA prediction 0.876885083986942 Functional Loss - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701349 chr17:4701349 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5547 0 0 1 0 2 PSMB6 chr17:4701304 3'AG 4701304 Downstream 46bp 5382 chr17 4701349 4701349 1 + G A OV 4701349 + 4701329 4701369 41 TGATGGTAAGGCAGTCCTTTGCCATTGGAGGCTCCGGGAGC TGATGGTAAGGCAGTCCTTTACCATTGGAGGCTCCGGGAGC Direct Loss 0.938442541993471 0 NA NA prediction 0.876885083986942 Functional Loss - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701349 chr17:4701349 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5547 0 0 1 0 2 PSMB6 chr17:4701448 5'GT 4701448 Upstream 100bp 5383 chr10 6154197 6154197 1 + G A CESC 6154197 + 6154177 6154217 41 ACGGTGGCGCACAAGATCATGCAGAAGTACGGCTTCCGGGA ACGGTGGCGCACAAGATCATACAGAAGTACGGCTTCCGGGA Direct Loss 0.938436340053513 0 NA NA prediction 0.876872680107026 Functional Loss - RBM17 ENSG00000134453 CDS Human protein_coding chr10:6154197 chr10:6154197 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5548 0 0 1 0 1 RBM17 chr10:6154173 3'AG 6154173 Downstream 25bp 5384 chr3 128755852 128755852 1 + G A LUSC 128755852 + 128755832 128755872 41 CAGAAGGTGGAAGAGAATGAGCACCTGAGGCTGGAGCTGCA CAGAAGGTGGAAGAGAATGAACACCTGAGGCTGGAGCTGCA Direct Loss 0.938435365977167 0 NA NA prediction 0.876870731954334 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128755852 chr3:128755852 synonymous SNV . 0 21 hm7G_associated_SNPs_5549 0 0 0 0 1 EFCC1 chr3:128755820 3'AG 128755820 Downstream 33bp 5385 chr13 28239911 28239911 1 + G C CESC 28239911 + 28239891 28239931 41 CTCATAAAGAGCAAGACCATGAACAAAAAGAGGGCGATAAG CTCATAAAGAGCAAGACCATCAACAAAAAGAGGGCGATAAG Direct Loss 0.938433179031704 0 NA NA prediction 0.876866358063407 Functional Loss - POLR1D ENSG00000186184 CDS Human protein_coding chr13:28239911 chr13:28239911 nonsynonymous SNV 0.941 1 21 hm7G_associated_SNPs_5550 0 0 0 1 1 POLR1D chr13:28239823 3'AG 28239823 Downstream 89bp 5386 chr18 63511096 63511096 1 + G T LIHC 63511096 + 63511076 63511116 41 ACACGCTACGGATAGAAGCTGCAAATAAAGATGCCGACCCT ACACGCTACGGATAGAAGCTTCAAATAAAGATGCCGACCCT Direct Loss 0.938429121805448 0 NA NA prediction 0.876858243610896 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63511096 chr18:63511096 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5551 0 0 0 0 1 CDH7 chr18:63511048 3'AG 63511048 Downstream 49bp 5387 chr22 50635690 50635690 1 + G C CESC 50635690 + 50635670 50635710 41 AACGGGCTCATGTCGGGGCTGATGCAGATGCTGCTGCTGAA AACGGGCTCATGTCGGGGCTCATGCAGATGCTGCTGCTGAA Direct Loss 0.93842811652422 0 NA NA prediction 0.876856233048439 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50635690 chr22:50635690 synonymous SNV . 0 21 hm7G_associated_SNPs_5552 0 0 1 0 2 TRABD chr22:50635670 3'AG 50635670 Downstream 21bp 5388 chr22 50635690 50635690 1 + G C CESC 50635690 + 50635670 50635710 41 AACGGGCTCATGTCGGGGCTGATGCAGATGCTGCTGCTGAA AACGGGCTCATGTCGGGGCTCATGCAGATGCTGCTGCTGAA Direct Loss 0.93842811652422 0 NA NA prediction 0.876856233048439 Functional Loss - TRABD ENSG00000170638 CDS Human protein_coding chr22:50635690 chr22:50635690 synonymous SNV . 0 21 hm7G_associated_SNPs_5552 0 0 1 0 2 TRABD chr22:50635780 5'GT 50635780 Upstream 91bp 5389 chr17 61684718 61684718 1 + G T LUSC 61684718 + 61684698 61684738 41 TGTGGTTGAAGTGGAGGACAGAGAGAAGAAGGCTGTGAACC TGTGGTTGAAGTGGAGGACATAGAGAAGAAGGCTGTGAACC Direct Loss 0.938427662049071 0 NA NA prediction 0.876855324098141 Functional Loss - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61684718 chr17:61684718 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5553 0 0 1 0 1 TACO1 chr17:61684647 3'AG 61684647 Downstream 72bp 5390 chr19 9940652 9940652 1 + G A LUSC 9940652 + 9940632 9940672 41 TTCCTTCAGATGAAATCCACGATGGGATGAACCTGGAGCTT TTCCTTCAGATGAAATCCACAATGGGATGAACCTGGAGCTT Direct Loss 0.938427352986055 0 NA NA prediction 0.876854705972109 Functional Loss - UBL5 ENSG00000198258 CDS Human protein_coding chr19:9940652 chr19:9940652 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_5554 0 0 1 0 1 UBL5 chr19:9940641 3'AG 9940641 Downstream 12bp 5391 chr1 153177226 153177226 1 + G T LUAD 153177226 + 153177206 153177246 41 AATCAAATGACCCCAAGACTGAGCCCAAGAACTGCGATCCC AATCAAATGACCCCAAGACTTAGCCCAAGAACTGCGATCCC Direct Loss 0.938425566919695 0 NA NA prediction 0.87685113383939 Functional Loss - LELP1 ENSG00000203784 CDS Human protein_coding chr1:153177226 chr1:153177226 stopgain 0.925 0 21 hm7G_associated_SNPs_5555 0 0 0 0 1 LELP1 chr1:153177163 3'AG 153177163 Downstream 64bp 5392 chr10 88719792 88719792 1 + G A CESC 88719792 + 88719772 88719812 41 AAGGAGCAGGCCAACGCCGTGAGCGAGGCTGTGGTGAGCAG AAGGAGCAGGCCAACGCCGTAAGCGAGGCTGTGGTGAGCAG Direct Loss 0.938423190157656 0 NA NA prediction 0.876846380315313 Functional Loss - SNCG ENSG00000173267 CDS Human protein_coding chr10:88719792 chr10:88719792 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_5556 0 0 1 0 2 SNCG chr10:88719758 3'AG 88719758 Downstream 35bp 5393 chr10 88719792 88719792 1 + G A CESC 88719792 + 88719772 88719812 41 AAGGAGCAGGCCAACGCCGTGAGCGAGGCTGTGGTGAGCAG AAGGAGCAGGCCAACGCCGTAAGCGAGGCTGTGGTGAGCAG Direct Loss 0.938423190157656 0 NA NA prediction 0.876846380315313 Functional Loss - SNCG ENSG00000173267 CDS Human protein_coding chr10:88719792 chr10:88719792 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_5556 0 0 1 0 2 SNCG chr10:88719885 5'GT 88719885 Upstream 94bp 5394 chr19 12779424 12779424 1 - C T STAD 12779424 - 12779404 12779444 41 TACCTTTCCCTAGCTGAAGTGGTGTGCTTGGGTCGCTGTCT TACCTTTCCCTAGCTGAAGTAGTGTGCTTGGGTCGCTGTCT Direct Loss 0.938416602980841 0 NA NA prediction 0.876833205961683 Functional Loss - WDR83OS ENSG00000105583 CDS Human protein_coding chr19:12779424 chr19:12779424 stopgain 1.000 1 21 hm7G_associated_SNPs_5558 0 0 1 0 2 WDR83OS chr19:12779334 5'GT 12779334 Upstream 91bp 5395 chr19 12779424 12779424 1 - C T STAD 12779424 - 12779404 12779444 41 TACCTTTCCCTAGCTGAAGTGGTGTGCTTGGGTCGCTGTCT TACCTTTCCCTAGCTGAAGTAGTGTGCTTGGGTCGCTGTCT Direct Loss 0.938416602980841 0 NA NA prediction 0.876833205961683 Functional Loss - WDR83OS ENSG00000105583 CDS Human protein_coding chr19:12779424 chr19:12779424 stopgain 1.000 1 21 hm7G_associated_SNPs_5558 0 0 1 0 2 WDR83OS chr19:12779431 3'AG 12779431 Downstream 8bp 5396 chr3 46937282 46937282 1 + G A HNSC 46937282 + 46937262 46937302 41 GTCCACATCAGGGAAGCCCAGGAAAGATAAGGCATCTGGGA GTCCACATCAGGGAAGCCCAAGAAAGATAAGGCATCTGGGA Direct Loss 0.938412370959456 0 NA NA prediction 0.876824741918913 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937282 chr3:46937282 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_5560 0 0 0 0 2 PTH1R chr3:46937225 3'AG 46937225 Downstream 58bp 5397 chr3 46937282 46937282 1 + G A HNSC 46937282 + 46937262 46937302 41 GTCCACATCAGGGAAGCCCAGGAAAGATAAGGCATCTGGGA GTCCACATCAGGGAAGCCCAAGAAAGATAAGGCATCTGGGA Direct Loss 0.938412370959456 0 NA NA prediction 0.876824741918913 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937282 chr3:46937282 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_5560 0 0 0 0 2 PTH1R chr3:46937359 5'GT 46937359 Upstream 78bp 5398 chr1 93301831 93301831 1 + G T UCEC 93301831 + 93301811 93301851 41 ACAATGTGGAAAGCATTGATGGTCAGCCAGGTGCCTTCACC ACAATGTGGAAAGCATTGATTGTCAGCCAGGTGCCTTCACC Direct Loss 0.938399476639071 0 NA NA prediction 0.876798953278142 Functional Loss - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93301831 chr1:93301831 nonsynonymous SNV 0.919 5 21 hm7G_associated_SNPs_5562 0 0 1 2 1 RPL5 chr1:93301747 3'AG 93301747 Downstream 85bp 5399 chr1 8395530 8395530 1 + G A SKCM 8395530 + 8395510 8395550 41 TGCTCAACGGCGTGAAGTATGAGAGCGAGCTGACGGGCTCC TGCTCAACGGCGTGAAGTATAAGAGCGAGCTGACGGGCTCC Direct Loss 0.938398805054068 0 NA NA prediction 0.876797610108137 Functional Loss - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8395530 chr1:8395530 nonsynonymous SNV 0.947 2 21 hm7G_associated_SNPs_5564 0 0 0 0 1 SLC45A1 chr1:8395497 3'AG 8395497 Downstream 34bp 5400 chr9 90342998 90342998 1 + G A LIHC 90342998 + 90342978 90343018 41 AACATGAAGATGATTGAACTGCACAATCAGGAATACAGGGA AACATGAAGATGATTGAACTACACAATCAGGAATACAGGGA Direct Loss 0.938397616844886 0 NA NA prediction 0.876795233689772 Functional Loss - CTSL ENSG00000135047 CDS Human protein_coding chr9:90342998 chr9:90342998 synonymous SNV . 0 21 hm7G_associated_SNPs_5565 0 0 1 0 2 CTSL chr9:90342942 3'AG 90342942 Downstream 57bp 5401 chr9 90342998 90342998 1 + G A LIHC 90342998 + 90342978 90343018 41 AACATGAAGATGATTGAACTGCACAATCAGGAATACAGGGA AACATGAAGATGATTGAACTACACAATCAGGAATACAGGGA Direct Loss 0.938397616844886 0 NA NA prediction 0.876795233689772 Functional Loss - CTSL ENSG00000135047 CDS Human protein_coding chr9:90342998 chr9:90342998 synonymous SNV . 0 21 hm7G_associated_SNPs_5565 0 0 1 0 2 CTSL chr9:90343064 5'GT 90343064 Upstream 67bp 5402 chr19 994262 994262 1 + G A LUSC 994262 + 994242 994282 41 GTCCGTGTGACGGAGCTGGAGGACGAGGTGCGCAACCTGCG GTCCGTGTGACGGAGCTGGAAGACGAGGTGCGCAACCTGCG Direct Loss 0.938388893695618 0 NA NA prediction 0.876777787391235 Functional Loss - WDR18 ENSG00000065268 CDS Human protein_coding chr19:994262 chr19:994262 synonymous SNV . 0 21 hm7G_associated_SNPs_5569 0 0 1 0 1 WDR18 chr19:994212 3'AG 994212 Downstream 51bp 5403 chrX 49173689 49173689 1 + G T THCA 49173689 + 49173669 49173709 41 AACAGGTTCACCCAAAGACTGGGTGTGAGTGTGGAGATGGT AACAGGTTCACCCAAAGACTTGGTGTGAGTGTGGAGATGGT Direct Loss 0.938386922579295 0 NA NA prediction 0.87677384515859 Functional Loss - GAGE10 ENSG00000215274 CDS Human protein_coding chrX:49173689 chrX:49173689 nonsynonymous SNV 0.051 3 21 hm7G_associated_SNPs_5570 0 0 0 1 1 GAGE10 chrX:49173767 5'GT 49173767 Upstream 79bp 5404 chr7 154875957 154875957 1 + G A BLCA 154875957 + 154875937 154875977 41 GGGGACACGTGGCGGGAGCAGAAGGAGCAGCGGGCCGCCCT GGGGACACGTGGCGGGAGCAAAAGGAGCAGCGGGCCGCCCT Direct Loss 0.938378053018703 0 NA NA prediction 0.876756106037407 Functional Loss - HTR5A ENSG00000157219 CDS Human protein_coding chr7:154875957 chr7:154875957 synonymous SNV . 0 21 hm7G_associated_SNPs_5572 0 0 0 0 1 HTR5A chr7:154875865 3'AG 154875865 Downstream 93bp 5405 chrX 16846219 16846219 1 + G A SKCM 16846219 + 16846199 16846239 41 AGTGCTTATGAATTTTAGCTGGAGGAGAGCAGGAGTGTTCA AGTGCTTATGAATTTTAGCTAGAGGAGAGCAGGAGTGTTCA Direct Loss 0.938366733871506 0 NA NA prediction 0.876733467743013 Functional Loss - TXLNG ENSG00000086712 CDS Human protein_coding chrX:16846219 chrX:16846219 synonymous SNV . 0 21 hm7G_associated_SNPs_5573 0 0 1 0 1 TXLNG chrX:16846217 3'AG 16846217 Downstream 3bp 5406 chr11 68452465 68452465 1 + G A OV 68452465 + 68452445 68452485 41 TTCTGCCTCTGCGGGGCTCTGGTCGCCGGTAAGTGCGGGGC TTCTGCCTCTGCGGGGCTCTAGTCGCCGGTAAGTGCGGGGC Direct Loss 0.938366002066924 0 NA NA prediction 0.876732004133848 Functional Loss - GAL ENSG00000069482 CDS Human protein_coding chr11:68452465 chr11:68452465 stopgain 0.030 0 21 hm7G_associated_SNPs_5574 0 0 1 0 2 GAL chr11:68452392 3'AG 68452392 Downstream 74bp 5407 chr11 68452465 68452465 1 + G A OV 68452465 + 68452445 68452485 41 TTCTGCCTCTGCGGGGCTCTGGTCGCCGGTAAGTGCGGGGC TTCTGCCTCTGCGGGGCTCTAGTCGCCGGTAAGTGCGGGGC Direct Loss 0.938366002066924 0 NA NA prediction 0.876732004133848 Functional Loss - GAL ENSG00000069482 CDS Human protein_coding chr11:68452465 chr11:68452465 stopgain 0.030 0 21 hm7G_associated_SNPs_5574 0 0 1 0 2 GAL chr11:68452472 5'GT 68452472 Upstream 8bp 5408 chr1 104163179 104163179 1 + G A SKCM 104163179 + 104163159 104163199 41 TAAATTTCTACTAGGTAATTGATCTGGGTGGTGAGCCAATT TAAATTTCTACTAGGTAATTAATCTGGGTGGTGAGCCAATT Direct Loss 0.938361441027371 0 NA NA prediction 0.876722882054743 Functional Loss - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104163179 chr1:104163179 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_5575 0 0 0 0 1 AMY2A chr1:104163173 3'AG 104163173 Downstream 7bp 5409 chr2 27320380 27320380 1 + G A COAD 27320380 + 27320360 27320400 41 TCCTGTACCAGGGCCGGAACGCATCGGAGCAGGTGAAGATG TCCTGTACCAGGGCCGGAACACATCGGAGCAGGTGAAGATG Direct Loss 0.938357715304036 0 NA NA prediction 0.876715430608072 Functional Loss - KHK ENSG00000138030 CDS Human protein_coding chr2:27320380 chr2:27320380 nonsynonymous SNV 0.041 2 21 hm7G_associated_SNPs_5577 0 0 1 0 1 KHK chr2:27320371 3'AG 27320371 Downstream 10bp 5410 chr19 37967278 37967278 1 + G A LIHC 37967278 + 37967258 37967298 41 CCAAGTGTGATATTATTGTTGGAACAAGGAAAAGCACCCTG CCAAGTGTGATATTATTGTTAGAACAAGGAAAAGCACCCTG Direct Loss 0.938353727938775 0 NA NA prediction 0.876707455877551 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37967278 chr19:37967278 synonymous SNV . 0 21 hm7G_associated_SNPs_5579 0 0 1 0 2 ZNF570 chr19:37967241 3'AG 37967241 Downstream 38bp 5411 chr19 37967278 37967278 1 + G A LIHC 37967278 + 37967258 37967298 41 CCAAGTGTGATATTATTGTTGGAACAAGGAAAAGCACCCTG CCAAGTGTGATATTATTGTTAGAACAAGGAAAAGCACCCTG Direct Loss 0.938353727938775 0 NA NA prediction 0.876707455877551 Functional Loss - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37967278 chr19:37967278 synonymous SNV . 0 21 hm7G_associated_SNPs_5579 0 0 1 0 2 ZNF570 chr19:37967336 5'GT 37967336 Upstream 59bp 5412 chr11 66372824 66372824 1 + G A GBM 66372824 + 66372804 66372844 41 TTCCAGCACCGCGGAGACCTGGGCAATGTCCGTGCTGATGC TTCCAGCACCGCGGAGACCTAGGCAATGTCCGTGCTGATGC Direct Loss 0.938342403769038 0 NA NA prediction 0.876684807538077 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66372824 chr11:66372824 stopgain . 0 21 hm7G_associated_SNPs_5580 0 0 1 0 2 CCS chr11:66372810 3'AG 66372810 Downstream 15bp 5413 chr11 66372824 66372824 1 + G A GBM 66372824 + 66372804 66372844 41 TTCCAGCACCGCGGAGACCTGGGCAATGTCCGTGCTGATGC TTCCAGCACCGCGGAGACCTAGGCAATGTCCGTGCTGATGC Direct Loss 0.938342403769038 0 NA NA prediction 0.876684807538077 Functional Loss - CCS ENSG00000173992 CDS Human protein_coding chr11:66372824 chr11:66372824 stopgain . 0 21 hm7G_associated_SNPs_5580 0 0 1 0 2 CCS chr11:66372887 5'GT 66372887 Upstream 64bp 5414 chr6 43484844 43484844 1 + G A rs2231756 43484844 + 43484824 43484864 41 TCTAGTCTCGTGGAGAGATTGAAGATGGCGGCTTCTCAGGC TCTAGTCTCGTGGAGAGATTAAAGATGGCGGCTTCTCAGGC Direct Loss 0.938333833051993 0 NA NA prediction 0.876667666103986 Functional Loss - POLR1C ENSG00000171453 UTR5 Human protein_coding chr6:43484844 chr6:43484844 . . 0 21 hm7G_associated_SNPs_5582 2 0 1 0 1 POLR1C chr6:43484916 5'GT 43484916 Upstream 73bp 5415 chr2 187373343 187373343 1 + G A CESC 187373343 + 187373323 187373363 41 GACTTGGAAGAGGACAACGAGAGGGAGGGAACGGAAAATGG GACTTGGAAGAGGACAACGAAAGGGAGGGAACGGAAAATGG Direct Loss 0.938331343819718 0 NA NA prediction 0.876662687639437 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187373343 chr2:187373343 synonymous SNV . 0 21 hm7G_associated_SNPs_5585 0 0 1 0 1 ZC3H15 chr2:187373270 3'AG 187373270 Downstream 74bp 5416 chr16 71408702 71408702 1 + G A SKCM 71408702 + 71408682 71408722 41 AGGAGTTCATGCAGAAGTATGATAAAAACTCAGATGGGAAA AGGAGTTCATGCAGAAGTATAATAAAAACTCAGATGGGAAA Direct Loss 0.938321341992771 0 NA NA prediction 0.876642683985543 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71408702 chr16:71408702 nonsynonymous SNV 0.992 5 21 hm7G_associated_SNPs_5587 0 0 0 0 2 CALB2 chr16:71408648 3'AG 71408648 Downstream 55bp 5417 chr16 71408702 71408702 1 + G A SKCM 71408702 + 71408682 71408722 41 AGGAGTTCATGCAGAAGTATGATAAAAACTCAGATGGGAAA AGGAGTTCATGCAGAAGTATAATAAAAACTCAGATGGGAAA Direct Loss 0.938321341992771 0 NA NA prediction 0.876642683985543 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71408702 chr16:71408702 nonsynonymous SNV 0.992 5 21 hm7G_associated_SNPs_5587 0 0 0 0 2 CALB2 chr16:71408737 5'GT 71408737 Upstream 36bp 5418 chr8 99440250 99440250 1 + G A BLCA 99440250 + 99440230 99440270 41 ACGTGTCGGAGGCTAACGTCGAGGACGGGGAGATCCGCATC ACGTGTCGGAGGCTAACGTCAAGGACGGGGAGATCCGCATC Direct Loss 0.938319137463513 0 NA NA prediction 0.876638274927025 Functional Loss - KCNS2 ENSG00000156486 CDS Human protein_coding chr8:99440250 chr8:99440250 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5588 0 0 0 0 1 KCNS2 chr8:99440166 3'AG 99440166 Downstream 85bp 5419 chr20 35177578 35177578 1 + G T UCEC 35177578 + 35177558 35177598 41 TGTACCGGGAGGCACCCATTGATAAGAAAGGCAACTTCAAC TGTACCGGGAGGCACCCATTTATAAGAAAGGCAACTTCAAC Direct Loss 0.938313529150115 0 NA NA prediction 0.876627058300229 Functional Loss - MYL9 ENSG00000101335 CDS Human protein_coding chr20:35177578 chr20:35177578 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5589 0 0 0 0 1 MYL9 chr20:35177480 3'AG 35177480 Downstream 99bp 5420 chr4 661767 661767 1 + G A SKCM 661767 + 661747 661787 41 AAGGCTCTGGAGGAGAAGGAGGAGGAGGAGAGGGTGGCAGC AAGGCTCTGGAGGAGAAGGAAGAGGAGGAGAGGGTGGCAGC Direct Loss 0.93831056701568 0 NA NA prediction 0.876621134031359 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:661767 chr4:661767 synonymous SNV . 0 21 hm7G_associated_SNPs_5591 0 0 0 0 1 PDE6B chr4:661795 5'GT 661795 Upstream 29bp 5421 chr9 35846950 35846950 1 + G A UVM 35846950 + 35846930 35846970 41 GCCATTCGGAGTCGATATGTGCTGGAAGCTGCAGTCTACAC GCCATTCGGAGTCGATATGTACTGGAAGCTGCAGTCTACAC Direct Loss 0.93829881047283 0 NA NA prediction 0.87659762094566 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35846950 chr9:35846950 synonymous SNV . 0 21 hm7G_associated_SNPs_5595 0 0 0 0 1 TMEM8B chr9:35846992 5'GT 35846992 Upstream 43bp 5422 chr6 107365503 107365503 1 + G A BLCA 107365503 + 107365483 107365523 41 TACAAAGGTGAACTCAGGCTGAATGAGGAAAAATTATGGAA TACAAAGGTGAACTCAGGCTAAATGAGGAAAAATTATGGAA Direct Loss 0.938283003208523 0 NA NA prediction 0.876566006417046 Functional Loss - C6orf203 ENSG00000130349 CDS Human protein_coding chr6:107365503 chr6:107365503 synonymous SNV . 0 21 hm7G_associated_SNPs_5598 0 0 0 0 2 C6orf203 chr6:107365464 3'AG 107365464 Downstream 40bp 5423 chr6 107365503 107365503 1 + G A BLCA 107365503 + 107365483 107365523 41 TACAAAGGTGAACTCAGGCTGAATGAGGAAAAATTATGGAA TACAAAGGTGAACTCAGGCTAAATGAGGAAAAATTATGGAA Direct Loss 0.938283003208523 0 NA NA prediction 0.876566006417046 Functional Loss - C6orf203 ENSG00000130349 CDS Human protein_coding chr6:107365503 chr6:107365503 synonymous SNV . 0 21 hm7G_associated_SNPs_5598 0 0 0 0 2 C6orf203 chr6:107365536 5'GT 107365536 Upstream 34bp 5424 chr10 70673253 70673253 1 + G A rs552348576 70673253 + 70673233 70673273 41 TCTAAACTGCGACATGTTGTGCTTGATGAAGTGGATCAGAT TCTAAACTGCGACATGTTGTACTTGATGAAGTGGATCAGAT Direct Loss 0.938274532632135 0 NA NA prediction 0.876549065264271 Functional Loss - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70673253 chr10:70673253 synonymous SNV . 0 21 hm7G_associated_SNPs_5599 0 0 1 0 1 DDX50 chr10:70673332 5'GT 70673332 Upstream 80bp 5425 chr16 2017756 2017756 1 + G A UCEC 2017756 + 2017736 2017776 41 TGTCCGTGCTGTAGGAAAGAGGTGAAAAGGAAAAAGGTTGT TGTCCGTGCTGTAGGAAAGAAGTGAAAAGGAAAAAGGTTGT Direct Loss 0.938259839570498 0 NA NA prediction 0.876519679140997 Functional Loss - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2017756 chr16:2017756 synonymous SNV . 0 21 hm7G_associated_SNPs_5602 0 0 0 0 2 RNF151 chr16:2017726 3'AG 2017726 Downstream 31bp 5426 chr16 2017756 2017756 1 + G A UCEC 2017756 + 2017736 2017776 41 TGTCCGTGCTGTAGGAAAGAGGTGAAAAGGAAAAAGGTTGT TGTCCGTGCTGTAGGAAAGAAGTGAAAAGGAAAAAGGTTGT Direct Loss 0.938259839570498 0 NA NA prediction 0.876519679140997 Functional Loss - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2017756 chr16:2017756 synonymous SNV . 0 21 hm7G_associated_SNPs_5602 0 0 0 0 2 RNF151 chr16:2017822 5'GT 2017822 Upstream 67bp 5427 chr2 27260561 27260561 1 + G T UCEC 27260561 + 27260541 27260581 41 CCTAGCTGTCCCCCTGAGATGAAGAAAGAGGTGAGGATATG CCTAGCTGTCCCCCTGAGATTAAGAAAGAGGTGAGGATATG Direct Loss 0.938254021081802 0 NA NA prediction 0.876508042163603 Functional Loss - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27260561 chr2:27260561 nonsynonymous SNV 0.978 2 21 hm7G_associated_SNPs_5603 0 0 1 2 1 TMEM214 chr2:27260570 5'GT 27260570 Upstream 10bp 5428 chr4 119444540 119444540 1 + G A GBM 119444540 + 119444520 119444560 41 TAGTTCTTCATTCAAACACCGGATTAAAGAGCAGGAAGACT TAGTTCTTCATTCAAACACCAGATTAAAGAGCAGGAAGACT Direct Loss 0.938251914699254 0 NA NA prediction 0.876503829398509 Functional Loss - CEP170P1 ENSG00000154608 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119444540 chr4:119444540 . . 0 21 hm7G_associated_SNPs_5605 0 0 0 0 2 CEP170P1 chr4:119444474 3'AG 119444474 Downstream 67bp 5429 chr4 119444540 119444540 1 + G A GBM 119444540 + 119444520 119444560 41 TAGTTCTTCATTCAAACACCGGATTAAAGAGCAGGAAGACT TAGTTCTTCATTCAAACACCAGATTAAAGAGCAGGAAGACT Direct Loss 0.938251914699254 0 NA NA prediction 0.876503829398509 Functional Loss - CEP170P1 ENSG00000154608 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119444540 chr4:119444540 . . 0 21 hm7G_associated_SNPs_5605 0 0 0 0 2 CEP170P1 chr4:119444600 5'GT 119444600 Upstream 61bp 5430 chr12 49689976 49689976 1 + G A STAD 49689976 + 49689956 49689996 41 GTCAGGTTGGAGGAGGAGACGCGCAAGCGGGAGGACGCGGA GTCAGGTTGGAGGAGGAGACACGCAAGCGGGAGGACGCGGA Direct Loss 0.938251183595841 0 NA NA prediction 0.876502367191682 Functional Loss - PRPH ENSG00000135406 CDS Human protein_coding chr12:49689976 chr12:49689976 synonymous SNV . 0 21 hm7G_associated_SNPs_5606 0 0 0 0 2 PRPH chr12:49689961 3'AG 49689961 Downstream 16bp 5431 chr12 49689976 49689976 1 + G A STAD 49689976 + 49689956 49689996 41 GTCAGGTTGGAGGAGGAGACGCGCAAGCGGGAGGACGCGGA GTCAGGTTGGAGGAGGAGACACGCAAGCGGGAGGACGCGGA Direct Loss 0.938251183595841 0 NA NA prediction 0.876502367191682 Functional Loss - PRPH ENSG00000135406 CDS Human protein_coding chr12:49689976 chr12:49689976 synonymous SNV . 0 21 hm7G_associated_SNPs_5606 0 0 0 0 2 PRPH chr12:49690021 5'GT 49690021 Upstream 46bp 5432 chr20 43992210 43992210 1 + G A UCEC 43992210 + 43992190 43992230 41 AGCTACGTGTGGGACCCGCTGCTGATCCTGTCGCAGATCGT AGCTACGTGTGGGACCCGCTACTGATCCTGTCGCAGATCGT Direct Loss 0.938249929931456 0 NA NA prediction 0.876499859862912 Functional Loss - SYS1 ENSG00000204070;ENSG00000254806 CDS Human other chr20:43992210 chr20:43992210 synonymous SNV . 0 21 hm7G_associated_SNPs_5607 0 0 1 0 1 SYS1-DBNDD2 chr20:43992169 3'AG 43992169 Downstream 42bp 5433 chr11 66010495 66010495 1 + G A LUSC 66010495 + 66010475 66010515 41 GCCAAGCAGCAGCAGACTATGCTGAGAGGTGCGAGGGCAGG GCCAAGCAGCAGCAGACTATACTGAGAGGTGCGAGGGCAGG Direct Loss 0.938247480749703 0 NA NA prediction 0.876494961499406 Functional Loss - PACS1 ENSG00000175115 CDS Human protein_coding chr11:66010495 chr11:66010495 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5608 0 0 0 0 1 PACS1 chr11:66010502 5'GT 66010502 Upstream 8bp 5434 chrX 131207051 131207051 1 + G T SARC 131207051 + 131207031 131207071 41 AAGAACTCGAGAAAAGTATTGCTGTGGCTGAAGCCGCCTGT AAGAACTCGAGAAAAGTATTTCTGTGGCTGAAGCCGCCTGT Direct Loss 0.938235107700889 0 NA NA prediction 0.876470215401779 Functional Loss - STK26 ENSG00000134602 CDS Human protein_coding chrX:131207051 chrX:131207051 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5610 0 0 1 0 3 STK26 chrX:131206985 3'AG 131206985 Downstream 67bp 5435 chrX 131207051 131207051 1 + G T SARC 131207051 + 131207031 131207071 41 AAGAACTCGAGAAAAGTATTGCTGTGGCTGAAGCCGCCTGT AAGAACTCGAGAAAAGTATTTCTGTGGCTGAAGCCGCCTGT Direct Loss 0.938235107700889 0 NA NA prediction 0.876470215401779 Functional Loss - STK26 ENSG00000134602 CDS Human protein_coding chrX:131207051 chrX:131207051 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5610 0 0 1 0 3 STK26 chrX:131206994 3'AG 131206994 Downstream 58bp 5436 chrX 131207051 131207051 1 + G T SARC 131207051 + 131207031 131207071 41 AAGAACTCGAGAAAAGTATTGCTGTGGCTGAAGCCGCCTGT AAGAACTCGAGAAAAGTATTTCTGTGGCTGAAGCCGCCTGT Direct Loss 0.938235107700889 0 NA NA prediction 0.876470215401779 Functional Loss - STK26 ENSG00000134602 CDS Human protein_coding chrX:131207051 chrX:131207051 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5610 0 0 1 0 3 STK26 chrX:131207121 5'GT 131207121 Upstream 71bp 5437 chr8 97307478 97307478 1 + G A UCEC 97307478 + 97307458 97307498 41 ATCAGTATTACCTGGGAGCTGACTGAGGTAAGAAGGAGGGC ATCAGTATTACCTGGGAGCTAACTGAGGTAAGAAGGAGGGC Direct Loss 0.93822785556646 0 NA NA prediction 0.87645571113292 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97307478 chr8:97307478 synonymous SNV . 0 21 hm7G_associated_SNPs_5612 0 0 0 0 1 PTDSS1 chr8:97307484 5'GT 97307484 Upstream 7bp 5438 chr15 72957969 72957969 1 + G A rs550606095 72957969 + 72957949 72957989 41 GACCTCCCGAAGGAGAAGGCGGACGGGACGGAGCAGGTGGA GACCTCCCGAAGGAGAAGGCAGACGGGACGGAGCAGGTGGA Direct Loss 0.938219831185743 0 NA NA prediction 0.876439662371486 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72957969 chr15:72957969 synonymous SNV . 0 21 hm7G_associated_SNPs_5614 0 0 0 0 2 GOLGA6B chr15:72957937 3'AG 72957937 Downstream 33bp 5439 chr15 72957969 72957969 1 + G A rs550606095 72957969 + 72957949 72957989 41 GACCTCCCGAAGGAGAAGGCGGACGGGACGGAGCAGGTGGA GACCTCCCGAAGGAGAAGGCAGACGGGACGGAGCAGGTGGA Direct Loss 0.938219831185743 0 NA NA prediction 0.876439662371486 Functional Loss - GOLGA6B ENSG00000215186 CDS Human protein_coding chr15:72957969 chr15:72957969 synonymous SNV . 0 21 hm7G_associated_SNPs_5614 0 0 0 0 2 GOLGA6B chr15:72958039 5'GT 72958039 Upstream 71bp 5440 chr1 179782924 179782924 1 + G A COAD 179782924 + 179782904 179782944 41 TTCCGCACAGTATTACTGCTGCAAGAAGAGCGGAACCGAGG TTCCGCACAGTATTACTGCTACAAGAAGAGCGGAACCGAGG Direct Loss 0.938208649879959 0 NA NA prediction 0.876417299759919 Functional Loss - FAM163A ENSG00000143340 CDS Human protein_coding chr1:179782924 chr1:179782924 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_5620 0 0 0 0 1 FAM163A chr1:179782914 3'AG 179782914 Downstream 11bp 5441 chr11 1973439 1973439 1 + G C GBM 1973439 + 1973419 1973459 41 TGCGGACACGGGTGCAGCATGGTGAGTGCCCATGGGAGGTT TGCGGACACGGGTGCAGCATCGTGAGTGCCCATGGGAGGTT Direct Loss 0.938198704532995 0 NA NA prediction 0.876397409065989 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973439 chr11:1973439 nonsynonymous SNV 0.846 2 21 hm7G_associated_SNPs_5622 0 0 0 0 2 MRPL23 chr11:1973357 3'AG 1973357 Downstream 83bp 5442 chr11 1973439 1973439 1 + G C GBM 1973439 + 1973419 1973459 41 TGCGGACACGGGTGCAGCATGGTGAGTGCCCATGGGAGGTT TGCGGACACGGGTGCAGCATCGTGAGTGCCCATGGGAGGTT Direct Loss 0.938198704532995 0 NA NA prediction 0.876397409065989 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973439 chr11:1973439 nonsynonymous SNV 0.846 2 21 hm7G_associated_SNPs_5622 0 0 0 0 2 MRPL23 chr11:1973439 5'GT 1973439 Upstream 1bp 5443 chr5 76173577 76173577 1 + G A SKCM 76173577 + 76173557 76173597 41 ACAACGAAGTGGATTTTAATGAATTCGTGGTCATGGTGGCA ACAACGAAGTGGATTTTAATAAATTCGTGGTCATGGTGGCA Direct Loss 0.938197710945002 0 NA NA prediction 0.876395421890004 Functional Loss - S100Z ENSG00000171643 CDS Human protein_coding chr5:76173577 chr5:76173577 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5623 0 0 0 0 2 S100Z chr5:76173499 3'AG 76173499 Downstream 79bp 5444 chr5 76173577 76173577 1 + G A SKCM 76173577 + 76173557 76173597 41 ACAACGAAGTGGATTTTAATGAATTCGTGGTCATGGTGGCA ACAACGAAGTGGATTTTAATAAATTCGTGGTCATGGTGGCA Direct Loss 0.938197710945002 0 NA NA prediction 0.876395421890004 Functional Loss - S100Z ENSG00000171643 CDS Human protein_coding chr5:76173577 chr5:76173577 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5623 0 0 0 0 2 S100Z chr5:76173659 5'GT 76173659 Upstream 83bp 5445 chr7 103008256 103008256 1 + G A UCEC 103008256 + 103008236 103008276 41 GACTGTGTCCAAATAGCACTGGTAAGTAGAAAGTTCTTGCT GACTGTGTCCAAATAGCACTAGTAAGTAGAAAGTTCTTGCT Direct Loss 0.938189194036247 0 NA NA prediction 0.876378388072494 Functional Loss - PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103008256 chr7:103008256 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_5624 0 0 1 0 1 PSMC2 chr7:103008256 5'GT 103008256 Upstream 1bp 5446 chr3 16313191 16313191 1 + G A BLCA 16313191 + 16313171 16313211 41 TGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCA TGAAATCCAAAAGGAAAACTAATCACATGGAGAGAACTGCA Direct Loss 0.938157888832081 0 NA NA prediction 0.876315777664162 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16313191 chr3:16313191 nonsynonymous SNV 0.947 4 21 hm7G_associated_SNPs_5625 0 0 1 0 2 OXNAD1 chr3:16313166 3'AG 16313166 Downstream 26bp 5447 chr3 16313191 16313191 1 + G A BLCA 16313191 + 16313171 16313211 41 TGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCA TGAAATCCAAAAGGAAAACTAATCACATGGAGAGAACTGCA Direct Loss 0.938157888832081 0 NA NA prediction 0.876315777664162 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16313191 chr3:16313191 nonsynonymous SNV 0.947 4 21 hm7G_associated_SNPs_5625 0 0 1 0 2 OXNAD1 chr3:16313229 5'GT 16313229 Upstream 39bp 5448 chr17 27047786 27047786 1 + G C BLCA 27047786 + 27047766 27047806 41 AAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCACAGCCACAA AAGGCCAAGAAGGCAGTGTTCAAAGGTGTCCACAGCCACAA Direct Loss 0.938148471635796 0 NA NA prediction 0.876296943271591 Functional Loss - RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047786 chr17:27047786 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_5628 0 0 0 0 1 RPL23A chr17:27047725 3'AG 27047725 Downstream 62bp 5449 chr13 100637226 100637226 1 + G C CESC 100637226 + 100637206 100637246 41 AGCCGTTCCAGTGTGAGTTTGAGGGCTGCGACCGGCGCTTC AGCCGTTCCAGTGTGAGTTTCAGGGCTGCGACCGGCGCTTC Direct Loss 0.938143218789268 0 NA NA prediction 0.876286437578536 Functional Loss - ZIC2 ENSG00000043355 CDS Human protein_coding chr13:100637226 chr13:100637226 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5629 0 0 1 0 1 ZIC2 chr13:100637200 3'AG 100637200 Downstream 27bp 5450 chr21 36079682 36079682 1 + G T GBM 36079682 + 36079662 36079702 41 AATGTGACCACAGTGGACCTGAAAAGGTAAGACAAGGCGTC AATGTGACCACAGTGGACCTTAAAAGGTAAGACAAGGCGTC Direct Loss 0.938142989133625 0 NA NA prediction 0.87628597826725 Functional Loss - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36079682 chr21:36079682 synonymous SNV . 0 21 hm7G_associated_SNPs_5630 0 0 0 0 1 CLIC6 chr21:36079687 5'GT 36079687 Upstream 6bp 5451 chr22 35478517 35478517 1 + G A SKCM 35478517 + 35478497 35478537 41 CCTCTCCCATGCAGAAGGAAGGAAGAGCAAGCGGAGGGTTC CCTCTCCCATGCAGAAGGAAAGAAGAGCAAGCGGAGGGTTC Direct Loss 0.938136000281963 0 NA NA prediction 0.876272000563926 Functional Loss - ISX ENSG00000175329 CDS Human protein_coding chr22:35478517 chr22:35478517 nonsynonymous SNV 0.811 1 21 hm7G_associated_SNPs_5631 0 0 0 0 1 ISX chr22:35478511 3'AG 35478511 Downstream 7bp 5452 chr1 161093985 161093985 1 + G A UCEC 161093985 + 161093965 161094005 41 GTCGTGGCGAGTGATGATGCGCAGCAGCTGCAGCACCTGGC GTCGTGGCGAGTGATGATGCACAGCAGCTGCAGCACCTGGC Direct Loss 0.938134229083503 0 NA NA prediction 0.876268458167005 Functional Loss - DEDD ENSG00000158796 CDS Human other chr1:161093985 chr1:161093985 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5632 0 0 0 0 1 DEDD;NIT1 chr1:161093931 3'AG 161093931 Downstream 55bp 5453 chr19 12856460 12856460 1 + G A LUAD 12856460 + 12856440 12856480 41 ACTTCTCGGTGGTGGTATTTGACACGGCACCCACGGGCCAC ACTTCTCGGTGGTGGTATTTAACACGGCACCCACGGGCCAC Direct Loss 0.938130252710986 0 NA NA prediction 0.876260505421971 Functional Loss - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12856460 chr19:12856460 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5633 0 0 1 0 1 ASNA1 chr19:12856423 3'AG 12856423 Downstream 38bp 5454 chr19 8528503 8528503 1 + G T COAD 8528503 + 8528483 8528523 41 TGAATTCAAGATGGAAGAGAGCATGAAAAAAGCTGCGGAAG TGAATTCAAGATGGAAGAGATCATGAAAAAAGCTGCGGAAG Direct Loss 0.938130214596443 0 NA NA prediction 0.876260429192886 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8528503 chr19:8528503 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5634 0 0 1 0 1 HNRNPM chr19:8528570 5'GT 8528570 Upstream 68bp 5455 chr21 45217327 45217327 1 + G A UCEC 45217327 + 45217307 45217347 41 ATCGAGGAGCTGCTAGAGCTGCTGATGACTGAGATCCTGCA ATCGAGGAGCTGCTAGAGCTACTGATGACTGAGATCCTGCA Direct Loss 0.938129481769241 0 NA NA prediction 0.876258963538482 Functional Loss - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45217327 chr21:45217327 synonymous SNV . 0 21 hm7G_associated_SNPs_5635 0 0 1 0 1 RRP1 chr21:45217303 3'AG 45217303 Downstream 25bp 5456 chr10 96354572 96354572 1 + G T SARC 96354572 + 96354552 96354592 41 AGAAAATTGTGGAAAGAGCAGCTGCTAAAAGGAAACTGGAA AGAAAATTGTGGAAAGAGCATCTGCTAAAAGGAAACTGGAA Direct Loss 0.938091882375143 0 NA NA prediction 0.876183764750287 Functional Loss - HELLS ENSG00000119969 CDS Human protein_coding chr10:96354572 chr10:96354572 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5637 0 0 1 1 1 HELLS chr10:96354611 5'GT 96354611 Upstream 40bp 5457 chr12 121176213 121176213 1 + G T UCEC 121176213 + 121176193 121176233 41 CTGTCGCATCCCCAAGGACAGCATCCTGGGGGAGCCAGGGA CTGTCGCATCCCCAAGGACATCATCCTGGGGGAGCCAGGGA Direct Loss 0.938090660726443 0 NA NA prediction 0.876181321452886 Functional Loss - ACADS ENSG00000122971 CDS Human protein_coding chr12:121176213 chr12:121176213 nonsynonymous SNV 0.945 2 21 hm7G_associated_SNPs_5638 0 0 1 0 1 ACADS chr12:121176253 5'GT 121176253 Upstream 41bp 5458 chr6 35773838 35773838 1 + G T LUAD 35773838 + 35773818 35773858 41 CCACAGTCTATAAGATCTGTGCATGGATGCAGCTGGCTGCG CCACAGTCTATAAGATCTGTTCATGGATGCAGCTGGCTGCG Direct Loss 0.938078515543225 0 NA NA prediction 0.87615703108645 Functional Loss - LHFPL5 ENSG00000197753 CDS Human protein_coding chr6:35773838 chr6:35773838 nonsynonymous SNV 0.970 4 21 hm7G_associated_SNPs_5639 0 0 0 0 1 LHFPL5 chr6:35773859 5'GT 35773859 Upstream 22bp 5459 chr10 1060250 1060250 1 + G A COAD 1060250 + 1060230 1060270 41 TTGACATGGACGATAAAGACGATGTGAGTGTGGGGGCGGTT TTGACATGGACGATAAAGACAATGTGAGTGTGGGGGCGGTT Direct Loss 0.938077336879857 0 NA NA prediction 0.876154673759715 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1060250 chr10:1060250 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_5640 0 0 1 2 2 GTPBP4 chr10:1060187 3'AG 1060187 Downstream 64bp 5460 chr10 1060250 1060250 1 + G A COAD 1060250 + 1060230 1060270 41 TTGACATGGACGATAAAGACGATGTGAGTGTGGGGGCGGTT TTGACATGGACGATAAAGACAATGTGAGTGTGGGGGCGGTT Direct Loss 0.938077336879857 0 NA NA prediction 0.876154673759715 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1060250 chr10:1060250 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_5640 0 0 1 2 2 GTPBP4 chr10:1060252 5'GT 1060252 Upstream 3bp 5461 chrX 11317075 11317075 1 + G A LGG 11317075 + 11317055 11317095 41 GCTTGGCCATCAACAGACAAGACCAAGCGGGAGGAAGTGGT GCTTGGCCATCAACAGACAAAACCAAGCGGGAGGAAGTGGT Direct Loss 0.938072471868792 0 NA NA prediction 0.876144943737583 Functional Loss - AMELX ENSG00000125363 CDS Human protein_coding chrX:11317075 chrX:11317075 synonymous SNV . 0 21 hm7G_associated_SNPs_5641 0 0 0 0 1 AMELX chrX:11317093 5'GT 11317093 Upstream 19bp 5462 chr3 129252489 129252489 1 + G T LUSC 129252489 + 129252469 129252509 41 ACCACCATCTGCTGCGGCAAGAACCCACTGGGTGACGATGA ACCACCATCTGCTGCGGCAATAACCCACTGGGTGACGATGA Direct Loss 0.938069905958128 0 NA NA prediction 0.876139811916255 Functional Loss - RHO ENSG00000163914 CDS Human protein_coding chr3:129252489 chr3:129252489 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5642 0 0 0 0 1 RHO chr3:129252451 3'AG 129252451 Downstream 39bp 5463 chr6 35754821 35754821 1 + G T SARC 35754821 + 35754801 35754841 41 CCAGGACTGCGAGACTGGCTGCTGCCAACGTGCTCCAGACA CCAGGACTGCGAGACTGGCTTCTGCCAACGTGCTCCAGACA Direct Loss 0.938058024168805 0 NA NA prediction 0.87611604833761 Functional Loss - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754821 chr6:35754821 nonsynonymous SNV 0.030 3 21 hm7G_associated_SNPs_5643 0 0 0 0 2 CLPSL1 chr6:35754775 3'AG 35754775 Downstream 47bp 5464 chr6 35754821 35754821 1 + G T SARC 35754821 + 35754801 35754841 41 CCAGGACTGCGAGACTGGCTGCTGCCAACGTGCTCCAGACA CCAGGACTGCGAGACTGGCTTCTGCCAACGTGCTCCAGACA Direct Loss 0.938058024168805 0 NA NA prediction 0.87611604833761 Functional Loss - CLPSL1 ENSG00000204140 CDS Human protein_coding chr6:35754821 chr6:35754821 nonsynonymous SNV 0.030 3 21 hm7G_associated_SNPs_5643 0 0 0 0 2 CLPSL1 chr6:35754897 5'GT 35754897 Upstream 77bp 5465 chr6 42146077 42146077 1 + G T LUSC 42146077 + 42146057 42146097 41 AGCTTGGTCCTCAAGGGGAAGGTGGAACAGAAGCTCCGCTG AGCTTGGTCCTCAAGGGGAATGTGGAACAGAAGCTCCGCTG Direct Loss 0.93804729998656 0 NA NA prediction 0.87609459997312 Functional Loss - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42146077 chr6:42146077 nonsynonymous SNV 0.942 1 21 hm7G_associated_SNPs_5645 0 0 0 0 2 GUCA1A chr6:42146018 3'AG 42146018 Downstream 60bp 5466 chr6 42146077 42146077 1 + G T LUSC 42146077 + 42146057 42146097 41 AGCTTGGTCCTCAAGGGGAAGGTGGAACAGAAGCTCCGCTG AGCTTGGTCCTCAAGGGGAATGTGGAACAGAAGCTCCGCTG Direct Loss 0.93804729998656 0 NA NA prediction 0.87609459997312 Functional Loss - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42146077 chr6:42146077 nonsynonymous SNV 0.942 1 21 hm7G_associated_SNPs_5645 0 0 0 0 2 GUCA1A chr6:42146167 5'GT 42146167 Upstream 91bp 5467 chr20 31660530 31660530 1 + G A rs145354732 31660530 + 31660510 31660550 41 TCTCTTTTCACAGTGGCCCTGGATGTTGGAATTCCCCTGCC TCTCTTTTCACAGTGGCCCTAGATGTTGGAATTCCCCTGCC Direct Loss 0.938032626270728 0 NA NA prediction 0.876065252541455 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31660530 chr20:31660530 synonymous SNV . 0 21 hm7G_associated_SNPs_5646 0 0 0 0 2 BPIFB3 chr20:31660523 3'AG 31660523 Downstream 8bp 5468 chr20 31660530 31660530 1 + G A rs145354732 31660530 + 31660510 31660550 41 TCTCTTTTCACAGTGGCCCTGGATGTTGGAATTCCCCTGCC TCTCTTTTCACAGTGGCCCTAGATGTTGGAATTCCCCTGCC Direct Loss 0.938032626270728 0 NA NA prediction 0.876065252541455 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31660530 chr20:31660530 synonymous SNV . 0 21 hm7G_associated_SNPs_5646 0 0 0 0 2 BPIFB3 chr20:31660599 5'GT 31660599 Upstream 70bp 5469 chr9 92220903 92220903 1 + G C SKCM 92220903 + 92220883 92220923 41 GAACCCCAACGAGGACGCCTGGAAGGATCCCGCCTTGGAGA GAACCCCAACGAGGACGCCTCGAAGGATCCCGCCTTGGAGA Direct Loss 0.938026620017291 0 NA NA prediction 0.876053240034581 Functional Loss - GADD45G ENSG00000130222 CDS Human protein_coding chr9:92220903 chr9:92220903 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_5647 0 0 0 0 1 GADD45G chr9:92220884 3'AG 92220884 Downstream 20bp 5470 chr5 161309593 161309593 1 + G A SKCM 161309593 + 161309573 161309613 41 CAAGAGCAGAAGTTGTTTATGAATGGACCAGAGAGCCAGCA CAAGAGCAGAAGTTGTTTATAAATGGACCAGAGAGCCAGCA Direct Loss 0.93801885161998 0 NA NA prediction 0.876037703239959 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161309593 chr5:161309593 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5648 0 0 1 0 1 GABRA1 chr5:161309564 3'AG 161309564 Downstream 30bp 5471 chr17 45299108 45299108 1 + G A OV 45299108 + 45299088 45299128 41 CATCCTGCAGCACATTTCCCGCAACAAGGAGCAGGGCACCT CATCCTGCAGCACATTTCCCACAACAAGGAGCAGGGCACCT Direct Loss 0.938012425771367 0 NA NA prediction 0.876024851542735 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299108 chr17:45299108 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5650 0 0 1 0 1 MYL4 chr17:45299048 3'AG 45299048 Downstream 61bp 5472 chr16 29982737 29982737 1 + G T STAD 29982737 + 29982717 29982757 41 ACCCCTCCCTAGGAGGAGCTGGCTCTGTGTGGCTCCAGGCT ACCCCTCCCTAGGAGGAGCTTGCTCTGTGTGGCTCCAGGCT Direct Loss 0.938005330394575 0 NA NA prediction 0.87601066078915 Functional Loss - TMEM219 ENSG00000149932 CDS Human protein_coding chr16:29982737 chr16:29982737 synonymous SNV . 0 21 hm7G_associated_SNPs_5652 0 0 1 0 1 TMEM219 chr16:29982729 3'AG 29982729 Downstream 9bp 5473 chr4 52938099 52938099 1 + G T LUSC 52938099 + 52938079 52938119 41 TCAGGCTTAAATCTCTTCAAGCTCAGGAGGATGCCCGCCAC TCAGGCTTAAATCTCTTCAATCTCAGGAGGATGCCCGCCAC Direct Loss 0.937995500348573 0 NA NA prediction 0.875991000697146 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52938099 chr4:52938099 nonsynonymous SNV 0.163 0 21 hm7G_associated_SNPs_5654 0 0 0 0 1 SPATA18 chr4:52938083 3'AG 52938083 Downstream 17bp 5474 chr9 77746730 77746730 1 + G T COAD 77746730 + 77746710 77746750 41 ACAATCCATTGCATGAAGCAGCAAAAAGAGGTAGGTGTGAT ACAATCCATTGCATGAAGCATCAAAAAGAGGTAGGTGTGAT Direct Loss 0.937992774194164 0 NA NA prediction 0.875985548388327 Functional Loss - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77746730 chr9:77746730 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_5655 0 0 1 0 2 OSTF1 chr9:77746686 3'AG 77746686 Downstream 45bp 5475 chr9 77746730 77746730 1 + G T COAD 77746730 + 77746710 77746750 41 ACAATCCATTGCATGAAGCAGCAAAAAGAGGTAGGTGTGAT ACAATCCATTGCATGAAGCATCAAAAAGAGGTAGGTGTGAT Direct Loss 0.937992774194164 0 NA NA prediction 0.875985548388327 Functional Loss - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77746730 chr9:77746730 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_5655 0 0 1 0 2 OSTF1 chr9:77746739 5'GT 77746739 Upstream 10bp 5476 chr19 13054408 13054408 1 + G A LUSC 13054408 + 13054388 13054428 41 CCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGACG CCAACGATGAGGCATACGCTAAGGAGTTTGGCAACGAGACG Direct Loss 0.937966617923334 0 NA NA prediction 0.875933235846668 Functional Loss - CALR ENSG00000179218 CDS Human protein_coding chr19:13054408 chr19:13054408 nonsynonymous SNV 0.532 1 21 hm7G_associated_SNPs_5656 0 0 1 0 2 CALR chr19:13054351 3'AG 13054351 Downstream 58bp 5477 chr19 13054408 13054408 1 + G A LUSC 13054408 + 13054388 13054428 41 CCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGACG CCAACGATGAGGCATACGCTAAGGAGTTTGGCAACGAGACG Direct Loss 0.937966617923334 0 NA NA prediction 0.875933235846668 Functional Loss - CALR ENSG00000179218 CDS Human protein_coding chr19:13054408 chr19:13054408 nonsynonymous SNV 0.532 1 21 hm7G_associated_SNPs_5656 0 0 1 0 2 CALR chr19:13054443 5'GT 13054443 Upstream 36bp 5478 chr17 38449836 38449836 1 + G A LUAD 38449836 + 38449816 38449856 41 AGGCCAGCTGGGAAGGACATGATGAGGAAATTGGAAAAACA AGGCCAGCTGGGAAGGACATAATGAGGAAATTGGAAAAACA Direct Loss 0.937957090279034 0 NA NA prediction 0.875914180558069 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38449836 chr17:38449836 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5657 0 0 1 0 1 CDC6 chr17:38449883 5'GT 38449883 Upstream 48bp 5479 chr12 111321859 111321859 1 + G T GBM 111321859 + 111321839 111321879 41 AAGGCAAAGAAGCATGTCAAGAAGAACAGGGGAGAGAGTTT AAGGCAAAGAAGCATGTCAATAAGAACAGGGGAGAGAGTTT Direct Loss 0.937950637120967 0 NA NA prediction 0.875901274241934 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111321859 chr12:111321859 nonsynonymous SNV 0.177 2 21 hm7G_associated_SNPs_5658 0 0 0 0 1 CCDC63 chr12:111321834 3'AG 111321834 Downstream 26bp 5480 chr1 228680819 228680819 1 + G T ESCA 228680819 + 228680799 228680839 41 AAGCTGCGGGCCTTCTTTGTGGAGGAGGAGGAGCATTTCCT AAGCTGCGGGCCTTCTTTGTTGAGGAGGAGGAGCATTTCCT Direct Loss 0.93794995508457 0 NA NA prediction 0.87589991016914 Functional Loss - RNF187 ENSG00000168159 CDS Human protein_coding chr1:228680819 chr1:228680819 synonymous SNV . 0 21 hm7G_associated_SNPs_5659 0 0 1 0 1 RNF187 chr1:228680754 3'AG 228680754 Downstream 66bp 5481 chr4 44685270 44685270 1 + G A LUSC 44685270 + 44685250 44685290 41 AGATAGATCTGAAGAATGCTGATCCTGAAAGGGTTGAAAAC AGATAGATCTGAAGAATGCTAATCCTGAAAGGGTTGAAAAC Direct Loss 0.937940338136518 0 NA NA prediction 0.875880676273036 Functional Loss - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44685270 chr4:44685270 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5660 0 0 1 1 2 GUF1 chr4:44685252 3'AG 44685252 Downstream 19bp 5482 chr4 44685270 44685270 1 + G A LUSC 44685270 + 44685250 44685290 41 AGATAGATCTGAAGAATGCTGATCCTGAAAGGGTTGAAAAC AGATAGATCTGAAGAATGCTAATCCTGAAAGGGTTGAAAAC Direct Loss 0.937940338136518 0 NA NA prediction 0.875880676273036 Functional Loss - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44685270 chr4:44685270 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5660 0 0 1 1 2 GUF1 chr4:44685335 5'GT 44685335 Upstream 66bp 5483 chr12 64174846 64174846 1 + G T COAD 64174846 + 64174826 64174866 41 GGAATCCTTGGGAAGGAGATGAAAAAAATGAGCAACAACAC GGAATCCTTGGGAAGGAGATTAAAAAAATGAGCAACAACAC Direct Loss 0.937935916686519 0 NA NA prediction 0.875871833373037 Functional Loss - TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64174846 chr12:64174846 stopgain 1.000 1 21 hm7G_associated_SNPs_5661 0 0 1 0 1 TMEM5 chr12:64174799 3'AG 64174799 Downstream 48bp 5484 chr14 74429732 74429732 1 + G T OV 74429732 + 74429712 74429752 41 TCCTAAAGAAAGATTACGTTGATGAAAAAGAACATCCTGCC TCCTAAAGAAAGATTACGTTTATGAAAAAGAACATCCTGCC Direct Loss 0.937918969605772 0 NA NA prediction 0.875837939211544 Functional Loss - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74429732 chr14:74429732 nonsynonymous SNV 0.923 0 21 hm7G_associated_SNPs_5664 0 0 1 2 2 COQ6 chr14:74429673 3'AG 74429673 Downstream 60bp 5485 chr14 74429732 74429732 1 + G T OV 74429732 + 74429712 74429752 41 TCCTAAAGAAAGATTACGTTGATGAAAAAGAACATCCTGCC TCCTAAAGAAAGATTACGTTTATGAAAAAGAACATCCTGCC Direct Loss 0.937918969605772 0 NA NA prediction 0.875837939211544 Functional Loss - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74429732 chr14:74429732 nonsynonymous SNV 0.923 0 21 hm7G_associated_SNPs_5664 0 0 1 2 2 COQ6 chr14:74429679 3'AG 74429679 Downstream 54bp 5486 chrX 128926639 128926639 1 + G T LUSC 128926639 + 128926619 128926659 41 AGATCATTGAAAAGCCACCTGTGGGCACGTGGCTGGGCCTA AGATCATTGAAAAGCCACCTTTGGGCACGTGGCTGGGCCTA Direct Loss 0.937914770477969 0 NA NA prediction 0.875829540955939 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926639 chrX:128926639 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_5665 0 0 0 0 1 SASH3 chrX:128926603 3'AG 128926603 Downstream 37bp 5487 chr12 110922929 110922929 1 + G T rs7956133 110922929 + 110922909 110922949 41 AACTCACACATAGCTAAGCTGCAAGAGTTATGGAAAACTCC AACTCACACATAGCTAAGCTTCAAGAGTTATGGAAAACTCC Direct Loss 0.937904723296165 0 NA NA prediction 0.875809446592329 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110922929 chr12:110922929 synonymous SNV . 0 21 hm7G_associated_SNPs_5666 0 0 1 0 2 FAM216A chr12:110922883 3'AG 110922883 Downstream 47bp 5488 chr12 110922929 110922929 1 + G T rs7956133 110922929 + 110922909 110922949 41 AACTCACACATAGCTAAGCTGCAAGAGTTATGGAAAACTCC AACTCACACATAGCTAAGCTTCAAGAGTTATGGAAAACTCC Direct Loss 0.937904723296165 0 NA NA prediction 0.875809446592329 Functional Loss - FAM216A ENSG00000204856 CDS Human protein_coding chr12:110922929 chr12:110922929 synonymous SNV . 0 21 hm7G_associated_SNPs_5666 0 0 1 0 2 FAM216A chr12:110923004 5'GT 110923004 Upstream 76bp 5489 chr20 13269286 13269286 1 + G A LIHC 13269286 + 13269266 13269306 41 CCGGTCTTGTGGCTACGCGTGCACTGCAACAGAATCGAGGA CCGGTCTTGTGGCTACGCGTACACTGCAACAGAATCGAGGA Direct Loss 0.937899200523297 0 NA NA prediction 0.875798401046593 Functional Loss - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13269286 chr20:13269286 nonsynonymous SNV 0.881 4 21 hm7G_associated_SNPs_5667 0 0 0 0 2 ISM1 chr20:13269187 3'AG 13269187 Downstream 100bp 5490 chr20 13269286 13269286 1 + G A LIHC 13269286 + 13269266 13269306 41 CCGGTCTTGTGGCTACGCGTGCACTGCAACAGAATCGAGGA CCGGTCTTGTGGCTACGCGTACACTGCAACAGAATCGAGGA Direct Loss 0.937899200523297 0 NA NA prediction 0.875798401046593 Functional Loss - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13269286 chr20:13269286 nonsynonymous SNV 0.881 4 21 hm7G_associated_SNPs_5667 0 0 0 0 2 ISM1 chr20:13269330 5'GT 13269330 Upstream 45bp 5491 chr1 53343512 53343512 1 + G T COAD 53343512 + 53343492 53343532 41 CAAATCTTCATCCAAGTCTTGGAGGTGGGAAGACAGGATTG CAAATCTTCATCCAAGTCTTTGAGGTGGGAAGACAGGATTG Direct Loss 0.937896544396675 0 NA NA prediction 0.87579308879335 Functional Loss - ZYG11A ENSG00000203995 CDS Human protein_coding chr1:53343512 chr1:53343512 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_5668 0 0 1 0 1 ZYG11A chr1:53343515 5'GT 53343515 Upstream 4bp 5492 chr9 135940518 135940518 1 + G A rs115568146 135940518 + 135940498 135940538 41 AACTTCCTCAACAACTACCTGTATGACGGCGAGGAGATCGC AACTTCCTCAACAACTACCTATATGACGGCGAGGAGATCGC Direct Loss 0.937893328269837 0 NA NA prediction 0.875786656539674 Functional Loss - CEL ENSG00000170835 CDS Human protein_coding chr9:135940518 chr9:135940518 synonymous SNV . 0 21 hm7G_associated_SNPs_5669 0 0 0 0 1 CEL chr9:135940427 3'AG 135940427 Downstream 92bp 5493 chr3 119531658 119531658 1 + G A UCEC 119531658 + 119531638 119531678 41 TTGAAGGTCTCTCTGCAGCTGCGGGGGGAGGATGGCAGTGT TTGAAGGTCTCTCTGCAGCTACGGGGGGAGGATGGCAGTGT Direct Loss 0.937878211119405 0 NA NA prediction 0.875756422238811 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119531658 chr3:119531658 synonymous SNV . 0 21 hm7G_associated_SNPs_5670 0 0 0 0 1 NR1I2 chr3:119531644 3'AG 119531644 Downstream 15bp 5494 chr19 40480540 40480540 1 + G C LUAD 40480540 + 40480520 40480560 41 CATTTCGAGCTCTACAAGCAGGTGAGGCGGTGCAGGTGGCA CATTTCGAGCTCTACAAGCACGTGAGGCGGTGCAGGTGGCA Direct Loss 0.937862369300351 0 NA NA prediction 0.875724738600703 Functional Loss - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40480540 chr19:40480540 nonsynonymous SNV 0.550 5 21 hm7G_associated_SNPs_5671 0 0 1 0 1 PSMC4 chr19:40480540 5'GT 40480540 Upstream 1bp 5495 chr11 57118338 57118338 1 + G A BLCA 57118338 + 57118318 57118358 41 CCCGGCTCGACAGCGTTTCTGAGAAAAGCAGCGTGTCCCCA CCCGGCTCGACAGCGTTTCTAAGAAAAGCAGCGTGTCCCCA Direct Loss 0.937860555540432 0 NA NA prediction 0.875721111080864 Functional Loss - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57118338 chr11:57118338 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_5674 0 0 0 0 1 P2RX3 chr11:57118372 5'GT 57118372 Upstream 35bp 5496 chr6 153042967 153042967 1 + G A SKCM 153042967 + 153042947 153042987 41 GTTCATTTGTCTGTCTCGAAGAAGAAGAGCCAGTGCTCCCA GTTCATTTGTCTGTCTCGAAAAAGAAGAGCCAGTGCTCCCA Direct Loss 0.937848039702229 0 NA NA prediction 0.875696079404458 Functional Loss - MYCT1 ENSG00000120279 CDS Human protein_coding chr6:153042967 chr6:153042967 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_5675 0 0 0 0 1 MYCT1 chr6:153042877 3'AG 153042877 Downstream 91bp 5497 chr5 89802429 89802429 1 + G A MESO 89802429 + 89802409 89802449 41 AAGAGAAAAGTAAAGAAGGTGATGATGACGATGACGATGAT AAGAGAAAAGTAAAGAAGGTAATGATGACGATGACGATGAT Direct Loss 0.937847319080226 0 NA NA prediction 0.875694638160451 Functional Loss - POLR3G ENSG00000113356 CDS Human protein_coding chr5:89802429 chr5:89802429 nonsynonymous SNV 0.856 0 21 hm7G_associated_SNPs_5676 0 0 1 0 2 POLR3G chr5:89802345 3'AG 89802345 Downstream 85bp 5498 chr5 89802429 89802429 1 + G A MESO 89802429 + 89802409 89802449 41 AAGAGAAAAGTAAAGAAGGTGATGATGACGATGACGATGAT AAGAGAAAAGTAAAGAAGGTAATGATGACGATGACGATGAT Direct Loss 0.937847319080226 0 NA NA prediction 0.875694638160451 Functional Loss - POLR3G ENSG00000113356 CDS Human protein_coding chr5:89802429 chr5:89802429 nonsynonymous SNV 0.856 0 21 hm7G_associated_SNPs_5676 0 0 1 0 2 POLR3G chr5:89802491 5'GT 89802491 Upstream 63bp 5499 chr10 12203089 12203089 1 + G A UCEC 12203089 + 12203069 12203109 41 TGCATTCTTCTCTAAGACATGGATTGAAGTGTCTGGTTCCT TGCATTCTTCTCTAAGACATAGATTGAAGTGTCTGGTTCCT Direct Loss 0.937843865588887 0 NA NA prediction 0.875687731177774 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12203089 chr10:12203089 stopgain 1.000 1 21 hm7G_associated_SNPs_5677 0 0 1 2 1 SEC61A2 chr10:12203120 5'GT 12203120 Upstream 32bp 5500 chr16 2223261 2223261 1 + G A UCEC 2223261 + 2223241 2223281 41 GAGGGCCTGAAGGAGTTTCTGCAGCAGACGGATGACCGCTT GAGGGCCTGAAGGAGTTTCTACAGCAGACGGATGACCGCTT Direct Loss 0.937811485506692 0 NA NA prediction 0.875622971013384 Functional Loss - TRAF7 ENSG00000131653 CDS Human protein_coding chr16:2223261 chr16:2223261 synonymous SNV . 0 21 hm7G_associated_SNPs_5681 0 0 1 0 1 TRAF7 chr16:2223183 3'AG 2223183 Downstream 79bp 5501 chr19 41825748 41825748 1 + G A BLCA 41825748 + 41825728 41825768 41 AGGAAGAGGAGGAGGACAGTGACGAGGAAGGTGAGGGCCAG AGGAAGAGGAGGAGGACAGTAACGAGGAAGGTGAGGGCCAG Direct Loss 0.937801773746471 0 NA NA prediction 0.875603547492942 Functional Loss - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41825748 chr19:41825748 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5682 0 0 0 0 1 CCDC97 chr19:41825757 5'GT 41825757 Upstream 10bp 5502 chr1 36552858 36552858 1 + G A rs142743253 36552858 + 36552838 36552878 41 ACGGAATTTGCCTTCAGGAAGCGGCTGCGGGAGATGGAGAA ACGGAATTTGCCTTCAGGAAACGGCTGCGGGAGATGGAGAA Direct Loss 0.937801670655712 0 NA NA prediction 0.875603341311424 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552858 chr1:36552858 synonymous SNV . 0 21 hm7G_associated_SNPs_5683 0 0 0 0 2 TEKT2 chr1:36552805 3'AG 36552805 Downstream 54bp 5503 chr1 36552858 36552858 1 + G A rs142743253 36552858 + 36552838 36552878 41 ACGGAATTTGCCTTCAGGAAGCGGCTGCGGGAGATGGAGAA ACGGAATTTGCCTTCAGGAAACGGCTGCGGGAGATGGAGAA Direct Loss 0.937801670655712 0 NA NA prediction 0.875603341311424 Functional Loss - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552858 chr1:36552858 synonymous SNV . 0 21 hm7G_associated_SNPs_5683 0 0 0 0 2 TEKT2 chr1:36552912 5'GT 36552912 Upstream 55bp 5504 chr1 153603057 153603057 1 + G A rs148757452 153603057 + 153603037 153603077 41 AACGTGTTCCACGCCCACTCGGGCAAAGAGGGGGACAAGTA AACGTGTTCCACGCCCACTCAGGCAAAGAGGGGGACAAGTA Direct Loss 0.937801037636646 0 NA NA prediction 0.875602075273293 Functional Loss - S100A1 ENSG00000160678 CDS Human protein_coding chr1:153603057 chr1:153603057 synonymous SNV . 0 21 hm7G_associated_SNPs_5684 0 0 1 0 2 S100A1 chr1:153602985 3'AG 153602985 Downstream 73bp 5505 chr1 153603057 153603057 1 + G A rs148757452 153603057 + 153603037 153603077 41 AACGTGTTCCACGCCCACTCGGGCAAAGAGGGGGACAAGTA AACGTGTTCCACGCCCACTCAGGCAAAGAGGGGGACAAGTA Direct Loss 0.937801037636646 0 NA NA prediction 0.875602075273293 Functional Loss - S100A1 ENSG00000160678 CDS Human protein_coding chr1:153603057 chr1:153603057 synonymous SNV . 0 21 hm7G_associated_SNPs_5684 0 0 1 0 2 S100A1 chr1:153603138 5'GT 153603138 Upstream 82bp 5506 chr14 101201029 101201029 1 + G A UCEC 101201029 + 101201009 101201049 41 CTGGGCGTGCTCACCAGCCTGGTGGTGCTGGGCACTGTGGG CTGGGCGTGCTCACCAGCCTAGTGGTGCTGGGCACTGTGGG Direct Loss 0.937786777477483 0 NA NA prediction 0.875573554954967 Functional Loss - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101201029 chr14:101201029 synonymous SNV . 0 21 hm7G_associated_SNPs_5686 0 0 1 0 1 DLK1 chr14:101200985 3'AG 101200985 Downstream 45bp 5507 chr1 86919096 86919096 1 + G C HNSC 86919096 + 86919076 86919116 41 GGAAATCAGTAGGCAGAAATGAGGAGGAGCGAAAGTGGGGC GGAAATCAGTAGGCAGAAATCAGGAGGAGCGAAAGTGGGGC Direct Loss 0.937782076879835 0 NA NA prediction 0.87556415375967 Functional Loss - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86919096 chr1:86919096 nonsynonymous SNV 0.013 0 21 hm7G_associated_SNPs_5688 0 0 0 0 1 CLCA2 chr1:86919052 3'AG 86919052 Downstream 45bp 5508 chr20 58411579 58411579 1 + G A LAML 58411579 + 58411559 58411599 41 GACGGCTGAGCCAAAGACCTGCCGTGGAAGAGCTGGAGAGA GACGGCTGAGCCAAAGACCTACCGTGGAAGAGCTGGAGAGA Direct Loss 0.937779101603007 0 NA NA prediction 0.875558203206015 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58411579 chr20:58411579 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_5689 0 0 1 0 2 PHACTR3 chr20:58411560 3'AG 58411560 Downstream 20bp 5509 chr20 58411579 58411579 1 + G A LAML 58411579 + 58411559 58411599 41 GACGGCTGAGCCAAAGACCTGCCGTGGAAGAGCTGGAGAGA GACGGCTGAGCCAAAGACCTACCGTGGAAGAGCTGGAGAGA Direct Loss 0.937779101603007 0 NA NA prediction 0.875558203206015 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58411579 chr20:58411579 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_5689 0 0 1 0 2 PHACTR3 chr20:58411615 5'GT 58411615 Upstream 37bp 5510 chr12 57965876 57965876 1 + G A TGCT 57965876 + 57965856 57965896 41 ACCCGAGGAGACAACGAGAAGGTCCAGCGGGAGCTGAGCCA ACCCGAGGAGACAACGAGAAAGTCCAGCGGGAGCTGAGCCA Direct Loss 0.937771440304966 0 NA NA prediction 0.875542880609931 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57965876 chr12:57965876 synonymous SNV . 0 21 hm7G_associated_SNPs_5690 0 0 1 0 1 KIF5A chr12:57965844 3'AG 57965844 Downstream 33bp 5511 chr5 113822756 113822756 1 + G A COAD 113822756 + 113822736 113822776 41 TCTCTTAACAGGTAAAAAATGCAGCTGCCAATGTACTCAGG TCTCTTAACAGGTAAAAAATACAGCTGCCAATGTACTCAGG Direct Loss 0.937769521225793 0 NA NA prediction 0.875539042451585 Functional Loss - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113822756 chr5:113822756 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5691 0 0 0 3 1 KCNN2 chr5:113822747 3'AG 113822747 Downstream 10bp 5512 chr6 17421798 17421798 1 + G A UCEC 17421798 + 17421778 17421818 41 TTTTCTAGAATGGCCAACATGCAGGGACTGGTGGAAAGACT TTTTCTAGAATGGCCAACATACAGGGACTGGTGGAAAGACT Direct Loss 0.937768044498969 0 NA NA prediction 0.875536088997937 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17421798 chr6:17421798 nonsynonymous SNV 0.935 1 21 hm7G_associated_SNPs_5692 0 0 1 0 1 CAP2 chr6:17421786 3'AG 17421786 Downstream 13bp 5513 chr17 61908953 61908953 1 + G C UCEC 61908953 + 61908933 61908973 41 AAATTGCTGAGCTCATGCCAGGAGCATCAGGGGCTGAAGTG AAATTGCTGAGCTCATGCCACGAGCATCAGGGGCTGAAGTG Direct Loss 0.937767726967463 0 NA NA prediction 0.875535453934927 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908953 chr17:61908953 nonsynonymous SNV 0.927 4 21 hm7G_associated_SNPs_5693 0 0 1 0 2 PSMC5 chr17:61908866 3'AG 61908866 Downstream 88bp 5514 chr17 61908953 61908953 1 + G C UCEC 61908953 + 61908933 61908973 41 AAATTGCTGAGCTCATGCCAGGAGCATCAGGGGCTGAAGTG AAATTGCTGAGCTCATGCCACGAGCATCAGGGGCTGAAGTG Direct Loss 0.937767726967463 0 NA NA prediction 0.875535453934927 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908953 chr17:61908953 nonsynonymous SNV 0.927 4 21 hm7G_associated_SNPs_5693 0 0 1 0 2 PSMC5 chr17:61908976 5'GT 61908976 Upstream 24bp 5515 chr14 31355479 31355479 1 + G A ESCA 31355479 + 31355459 31355499 41 TCACAGATGGGCAGTCCTATGATGATGTCCAAGGCCCTGCA TCACAGATGGGCAGTCCTATAATGATGTCCAAGGCCCTGCA Direct Loss 0.937765808936262 0 NA NA prediction 0.875531617872524 Functional Loss - COCH ENSG00000100473 CDS Human protein_coding chr14:31355479 chr14:31355479 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5694 0 0 1 0 1 COCH chr14:31355518 5'GT 31355518 Upstream 40bp 5516 chr11 65744523 65744523 1 + G A UCEC 65744523 + 65744503 65744543 41 ACCATCCTGGACGAGGAACCGATCGTGAATAGGGGGCTGGC ACCATCCTGGACGAGGAACCAATCGTGAATAGGGGGCTGGC Direct Loss 0.937757562844246 0 NA NA prediction 0.875515125688493 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65744523 chr11:65744523 synonymous SNV . 0 21 hm7G_associated_SNPs_5696 0 0 1 0 2 SART1 chr11:65744485 3'AG 65744485 Downstream 39bp 5517 chr11 65744523 65744523 1 + G A UCEC 65744523 + 65744503 65744543 41 ACCATCCTGGACGAGGAACCGATCGTGAATAGGGGGCTGGC ACCATCCTGGACGAGGAACCAATCGTGAATAGGGGGCTGGC Direct Loss 0.937757562844246 0 NA NA prediction 0.875515125688493 Functional Loss - SART1 ENSG00000175467 CDS Human protein_coding chr11:65744523 chr11:65744523 synonymous SNV . 0 21 hm7G_associated_SNPs_5696 0 0 1 0 2 SART1 chr11:65744572 5'GT 65744572 Upstream 50bp 5518 chr1 170136716 170136716 1 + G T BRCA 170136716 + 170136696 170136736 41 TCATCATATTGAAGGACAATGTGGCCCGGGAGGGCTGTATC TCATCATATTGAAGGACAATTTGGCCCGGGAGGGCTGTATC Direct Loss 0.937739073165205 0 NA NA prediction 0.87547814633041 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170136716 chr1:170136716 nonsynonymous SNV 0.973 1 21 hm7G_associated_SNPs_5699 0 0 0 0 1 METTL11B chr1:170136627 3'AG 170136627 Downstream 90bp 5519 chr5 176863210 176863210 1 + G T SARC 176863210 + 176863190 176863230 41 ATCAAGCGGGAGGAGGTGGAGCGGCTGGTGAAGGAGGTCCC ATCAAGCGGGAGGAGGTGGATCGGCTGGTGAAGGAGGTCCC Direct Loss 0.937734764205175 0 NA NA prediction 0.87546952841035 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176863210 chr5:176863210 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5700 0 0 1 0 1 GRK6 chr5:176863282 5'GT 176863282 Upstream 73bp 5520 chr19 13988564 13988564 1 + G T UCEC 13988564 + 13988544 13988584 41 ACACAGGCCACCGCCGAGGAGGAGGAGGAGGAGCAGGTGCC ACACAGGCCACCGCCGAGGATGAGGAGGAGGAGCAGGTGCC Direct Loss 0.937722833625732 0 NA NA prediction 0.875445667251464 Functional Loss - NANOS3 ENSG00000187556 CDS Human protein_coding chr19:13988564 chr19:13988564 stopgain 0.820 0 21 hm7G_associated_SNPs_5703 0 0 0 0 1 NANOS3 chr19:13988579 5'GT 13988579 Upstream 16bp 5521 chr13 28367757 28367757 1 + G T UCEC 28367757 + 28367737 28367777 41 GATGCGCACGGCTTTCACCAGCACGCAGCTGCTAGAGCTGG GATGCGCACGGCTTTCACCATCACGCAGCTGCTAGAGCTGG Direct Loss 0.937718987189876 0 NA NA prediction 0.875437974379751 Functional Loss - GSX1 ENSG00000169840 CDS Human protein_coding chr13:28367757 chr13:28367757 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5704 0 0 0 0 1 GSX1 chr13:28367703 3'AG 28367703 Downstream 55bp 5522 chr8 109455890 109455890 1 + G T CESC 109455890 + 109455870 109455910 41 CCTCTAGGTTCTGGGAAGATGGCGAAGGTCTCAGAGCTTTA CCTCTAGGTTCTGGGAAGATTGCGAAGGTCTCAGAGCTTTA Direct Loss 0.937716877003549 0 NA NA prediction 0.875433754007098 Functional Loss - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109455890 chr8:109455890 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5706 0 0 0 0 1 EMC2 chr8:109455927 5'GT 109455927 Upstream 38bp 5523 chr8 124440260 124440260 1 + G A rs10505435 124440260 + 124440240 124440280 41 TTCATATCTAATGAGAGGAAGATGGTAAGTTGGTGAGTGAT TTCATATCTAATGAGAGGAAAATGGTAAGTTGGTGAGTGAT Direct Loss 0.937714812672249 0 NA NA prediction 0.875429625344498 Functional Loss - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124440260 chr8:124440260 synonymous SNV . 0 21 hm7G_associated_SNPs_5707 0 0 0 0 2 WDYHV1 chr8:124440164 3'AG 124440164 Downstream 97bp 5524 chr8 124440260 124440260 1 + G A rs10505435 124440260 + 124440240 124440280 41 TTCATATCTAATGAGAGGAAGATGGTAAGTTGGTGAGTGAT TTCATATCTAATGAGAGGAAAATGGTAAGTTGGTGAGTGAT Direct Loss 0.937714812672249 0 NA NA prediction 0.875429625344498 Functional Loss - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124440260 chr8:124440260 synonymous SNV . 0 21 hm7G_associated_SNPs_5707 0 0 0 0 2 WDYHV1 chr8:124440263 5'GT 124440263 Upstream 4bp 5525 chr17 63221545 63221545 1 + G A BLCA 63221545 + 63221525 63221565 41 GCTGTGTCCCACGGGAGGGTGCAGCCCCTGGGGGACGTGGG GCTGTGTCCCACGGGAGGGTACAGCCCCTGGGGGACGTGGG Direct Loss 0.937713851577797 0 NA NA prediction 0.875427703155594 Functional Loss - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63221545 chr17:63221545 synonymous SNV . 0 21 hm7G_associated_SNPs_5708 0 0 0 0 1 RGS9 chr17:63221604 5'GT 63221604 Upstream 60bp 5526 chr1 43255567 43255567 1 + G A rs61743366 43255567 + 43255547 43255587 41 GCCTTATCTCTGGCCAACATGGTGCTGGGGCTCTTCTCCAT GCCTTATCTCTGGCCAACATAGTGCTGGGGCTCTTCTCCAT Direct Loss 0.937704905460829 0 NA NA prediction 0.875409810921657 Functional Loss - TMEM269 ENSG00000164008 CDS Human protein_coding chr1:43255567 chr1:43255567 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_5710 0 0 0 0 2 TMEM269 chr1:43255492 3'AG 43255492 Downstream 76bp 5527 chr1 43255567 43255567 1 + G A rs61743366 43255567 + 43255547 43255587 41 GCCTTATCTCTGGCCAACATGGTGCTGGGGCTCTTCTCCAT GCCTTATCTCTGGCCAACATAGTGCTGGGGCTCTTCTCCAT Direct Loss 0.937704905460829 0 NA NA prediction 0.875409810921657 Functional Loss - TMEM269 ENSG00000164008 CDS Human protein_coding chr1:43255567 chr1:43255567 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_5710 0 0 0 0 2 TMEM269 chr1:43255605 5'GT 43255605 Upstream 39bp 5528 chr6 2785330 2785330 1 + G A BRCA 2785330 + 2785310 2785350 41 AACAACGTCAAAGCCTGCCTGAGGAACCACCAGGGGCCACT AACAACGTCAAAGCCTGCCTAAGGAACCACCAGGGGCCACT Direct Loss 0.937699919109751 0 NA NA prediction 0.875399838219502 Functional Loss - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2785330 chr6:2785330 synonymous SNV . 0 21 hm7G_associated_SNPs_5712 0 0 1 0 1 WRNIP1 chr6:2785241 3'AG 2785241 Downstream 90bp 5529 chr1 10032236 10032236 1 + G C HNSC 10032236 + 10032216 10032256 41 GAGCTGGCCAAGGACTACATGAATGGAACAGGTAGGAGCAG GAGCTGGCCAAGGACTACATCAATGGAACAGGTAGGAGCAG Direct Loss 0.937685919076627 0 NA NA prediction 0.875371838153255 Functional Loss - NMNAT1 ENSG00000173614 CDS Human protein_coding chr1:10032236 chr1:10032236 nonsynonymous SNV 0.991 2 21 hm7G_associated_SNPs_5713 0 0 1 0 1 NMNAT1 chr1:10032246 5'GT 10032246 Upstream 11bp 5530 chr3 120315335 120315335 1 + G A BLCA 120315335 + 120315315 120315355 41 TTGGCCATAAGAGCCCAGCTGAAACGAGAGTACCTGCTTCA TTGGCCATAAGAGCCCAGCTAAAACGAGAGTACCTGCTTCA Direct Loss 0.937677496077822 0 NA NA prediction 0.875354992155645 Functional Loss - NDUFB4 ENSG00000065518 CDS Human protein_coding chr3:120315335 chr3:120315335 synonymous SNV . 0 21 hm7G_associated_SNPs_5715 0 0 1 0 1 NDUFB4 chr3:120315386 5'GT 120315386 Upstream 52bp 5531 chr14 59954419 59954419 1 + G A STAD 59954419 + 59954399 59954439 41 CAAGAGGACAGAGAACGAATGCACAGAAATATTGTCAGCCT CAAGAGGACAGAGAACGAATACACAGAAATATTGTCAGCCT Direct Loss 0.937672633121159 0 NA NA prediction 0.875345266242319 Functional Loss - JKAMP ENSG00000050130 CDS Human protein_coding chr14:59954419 chr14:59954419 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_5717 0 0 1 0 1 JKAMP chr14:59954392 3'AG 59954392 Downstream 28bp 5532 chr1 38027303 38027303 1 + G A SKCM 38027303 + 38027283 38027323 41 GGCATGAGGAAGGCACTGCAGGCTGAGCAGGGGAAGTCAGA GGCATGAGGAAGGCACTGCAAGCTGAGCAGGGGAAGTCAGA Direct Loss 0.9376696340042 0 NA NA prediction 0.875339268008401 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027303 chr1:38027303 synonymous SNV . 0 21 hm7G_associated_SNPs_5718 0 0 0 0 1 DNALI1 chr1:38027336 5'GT 38027336 Upstream 34bp 5533 chr7 5330418 5330418 1 + G A ESCA 5330418 + 5330398 5330438 41 GCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGCTTCCT GCCATCTACTTTGCGATGCTACTGGCTGGCGTGGGCTTCCT Direct Loss 0.937667973617616 0 NA NA prediction 0.875335947235232 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330418 chr7:5330418 synonymous SNV . 0 21 hm7G_associated_SNPs_5719 0 0 0 9 2 SLC29A4 chr7:5330363 3'AG 5330363 Downstream 56bp 5534 chr7 5330418 5330418 1 + G A ESCA 5330418 + 5330398 5330438 41 GCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGCTTCCT GCCATCTACTTTGCGATGCTACTGGCTGGCGTGGGCTTCCT Direct Loss 0.937667973617616 0 NA NA prediction 0.875335947235232 Functional Loss - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5330418 chr7:5330418 synonymous SNV . 0 21 hm7G_associated_SNPs_5719 0 0 0 9 2 SLC29A4 chr7:5330494 5'GT 5330494 Upstream 77bp 5535 chr1 32714049 32714049 1 + G A rs377093352 32714049 + 32714029 32714069 41 CAGCTGCACCGACTGAAGATGGACCAAGCCTGTCACCTGCA CAGCTGCACCGACTGAAGATAGACCAAGCCTGTCACCTGCA Direct Loss 0.937661922876711 0 NA NA prediction 0.875323845753423 Functional Loss - FAM167B ENSG00000183615 CDS Human protein_coding chr1:32714049 chr1:32714049 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5720 0 0 0 0 1 FAM167B chr1:32713972 3'AG 32713972 Downstream 78bp 5536 chr2 15769775 15769775 1 + G A CESC 15769775 + 15769755 15769795 41 AAAAGGGTGTTATAACACAAGACTCAAGGAAGATGGAGGCT AAAAGGGTGTTATAACACAAAACTCAAGGAAGATGGAGGCT Direct Loss 0.937661509990691 0 NA NA prediction 0.875323019981382 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15769775 chr2:15769775 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5721 0 0 1 0 2 DDX1 chr2:15769726 3'AG 15769726 Downstream 50bp 5537 chr2 15769775 15769775 1 + G A CESC 15769775 + 15769755 15769795 41 AAAAGGGTGTTATAACACAAGACTCAAGGAAGATGGAGGCT AAAAGGGTGTTATAACACAAAACTCAAGGAAGATGGAGGCT Direct Loss 0.937661509990691 0 NA NA prediction 0.875323019981382 Functional Loss - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15769775 chr2:15769775 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5721 0 0 1 0 2 DDX1 chr2:15769821 5'GT 15769821 Upstream 47bp 5538 chr17 6909853 6909853 1 + G A UCEC 6909853 + 6909833 6909873 41 TACCAAAGGGATGACATAGTGAAGGGGGACCCTGAGCTGCA TACCAAAGGGATGACATAGTAAAGGGGGACCCTGAGCTGCA Direct Loss 0.937660843194548 0 NA NA prediction 0.875321686389097 Functional Loss - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6909853 chr17:6909853 synonymous SNV . 0 21 hm7G_associated_SNPs_5722 0 0 0 0 2 ALOX12 chr17:6909805 3'AG 6909805 Downstream 49bp 5539 chr17 6909853 6909853 1 + G A UCEC 6909853 + 6909833 6909873 41 TACCAAAGGGATGACATAGTGAAGGGGGACCCTGAGCTGCA TACCAAAGGGATGACATAGTAAAGGGGGACCCTGAGCTGCA Direct Loss 0.937660843194548 0 NA NA prediction 0.875321686389097 Functional Loss - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6909853 chr17:6909853 synonymous SNV . 0 21 hm7G_associated_SNPs_5722 0 0 0 0 2 ALOX12 chr17:6909926 5'GT 6909926 Upstream 74bp 5540 chr10 105147795 105147795 1 + G A UCEC 105147795 + 105147775 105147815 41 ATACAGTTCGATTATGGGATGCTATCAAAGCCTTTGAAGAT ATACAGTTCGATTATGGGATACTATCAAAGCCTTTGAAGAT Direct Loss 0.937655175168617 0 NA NA prediction 0.875310350337234 Functional Loss - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105147795 chr10:105147795 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_5723 0 0 1 0 1 TAF5 chr10:105147763 3'AG 105147763 Downstream 33bp 5541 chr8 22332573 22332573 1 + G A BLCA 22332573 + 22332553 22332593 41 TTGGTAAAGGAAGGACGACTGGAAGAGGAAGTAGCCTTAAA TTGGTAAAGGAAGGACGACTAGAAGAGGAAGTAGCCTTAAA Direct Loss 0.937629904638411 0 NA NA prediction 0.875259809276822 Functional Loss - PPP3CC ENSG00000120910 CDS Human protein_coding chr8:22332573 chr8:22332573 synonymous SNV . 0 21 hm7G_associated_SNPs_5726 0 0 1 0 1 PPP3CC chr8:22332664 5'GT 22332664 Upstream 92bp 5542 chr17 7359233 7359233 1 + G A UCEC 7359233 + 7359213 7359253 41 ATCAGCTACATCGCTCGACAGCTGCAGGAACAGGAGGACCA ATCAGCTACATCGCTCGACAACTGCAGGAACAGGAGGACCA Direct Loss 0.937622397999414 0 NA NA prediction 0.875244795998829 Functional Loss - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7359233 chr17:7359233 synonymous SNV . 0 21 hm7G_associated_SNPs_5728 0 0 0 0 1 CHRNB1 chr17:7359260 5'GT 7359260 Upstream 28bp 5543 chr19 49422370 49422370 1 + G T LGG 49422370 + 49422350 49422390 41 CTGCGCATGCGGGAGCATGTGATGAAGAATGTGAGGTGGGG CTGCGCATGCGGGAGCATGTTATGAAGAATGTGAGGTGGGG Direct Loss 0.937621128494069 0 NA NA prediction 0.875242256988138 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422370 chr19:49422370 synonymous SNV . 0 21 hm7G_associated_SNPs_5729 0 0 1 0 2 NUCB1 chr19:49422287 3'AG 49422287 Downstream 84bp 5544 chr19 49422370 49422370 1 + G T LGG 49422370 + 49422350 49422390 41 CTGCGCATGCGGGAGCATGTGATGAAGAATGTGAGGTGGGG CTGCGCATGCGGGAGCATGTTATGAAGAATGTGAGGTGGGG Direct Loss 0.937621128494069 0 NA NA prediction 0.875242256988138 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49422370 chr19:49422370 synonymous SNV . 0 21 hm7G_associated_SNPs_5729 0 0 1 0 2 NUCB1 chr19:49422379 5'GT 49422379 Upstream 10bp 5545 chr11 125774440 125774440 1 + G A DLBC 125774440 + 125774420 125774460 41 CGTTACTGTGGGGAGGCGACGCAGGGGCGGCGGAGAGCGAG CGTTACTGTGGGGAGGCGACACAGGGGCGGCGGAGAGCGAG Direct Loss 0.937614142600015 0 NA NA prediction 0.87522828520003 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125774440 chr11:125774440 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_5730 0 0 0 0 1 DDX25 chr11:125774475 5'GT 125774475 Upstream 36bp 5546 chr2 46608807 46608807 1 + G T UCEC 46608807 + 46608787 46608827 41 GTAGCCCTCTCCAACAAGCTGAAGCTGAAGCGACAGCTGGA GTAGCCCTCTCCAACAAGCTTAAGCTGAAGCGACAGCTGGA Direct Loss 0.937610851996466 0 NA NA prediction 0.875221703992932 Functional Loss - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608807 chr2:46608807 synonymous SNV . 0 21 hm7G_associated_SNPs_5732 0 0 0 0 2 EPAS1 chr2:46608735 3'AG 46608735 Downstream 73bp 5547 chr2 46608807 46608807 1 + G T UCEC 46608807 + 46608787 46608827 41 GTAGCCCTCTCCAACAAGCTGAAGCTGAAGCGACAGCTGGA GTAGCCCTCTCCAACAAGCTTAAGCTGAAGCGACAGCTGGA Direct Loss 0.937610851996466 0 NA NA prediction 0.875221703992932 Functional Loss - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608807 chr2:46608807 synonymous SNV . 0 21 hm7G_associated_SNPs_5732 0 0 0 0 2 EPAS1 chr2:46608861 5'GT 46608861 Upstream 55bp 5548 chr20 54970626 54970626 1 + G T THYM 54970626 + 54970606 54970646 41 AAGATGTACAGAACCAAAGTGGGCTTGAAGGACCGCCAGCA AAGATGTACAGAACCAAAGTTGGCTTGAAGGACCGCCAGCA Direct Loss 0.937606353132713 0 NA NA prediction 0.875212706265425 Functional Loss - CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54970626 chr20:54970626 synonymous SNV . 0 21 hm7G_associated_SNPs_5733 0 0 1 0 1 CSTF1 chr20:54970577 3'AG 54970577 Downstream 50bp 5549 chr14 54996872 54996872 1 + G A rs11555279 54996872 + 54996852 54996892 41 TCTGCAGAAGCATGTTTATTGCTTCAGAATAAGCACTCCCC TCTGCAGAAGCATGTTTATTACTTCAGAATAAGCACTCCCC Direct Loss 0.937606293609382 0 NA NA prediction 0.875212587218763 Functional Loss - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:54996872 chr14:54996872 nonsynonymous SNV 0.563 0 21 hm7G_associated_SNPs_5734 0 0 0 0 1 CGRRF1 chr14:54996944 5'GT 54996944 Upstream 73bp 5550 chr4 110737457 110737457 1 + G C rs149585427 110737457 + 110737437 110737477 41 CAATTTCAGAGGCGGCGGCAGGGGAGGATTTGGACGAGGGG CAATTTCAGAGGCGGCGGCACGGGAGGATTTGGACGAGGGG Direct Loss 0.937604764596687 0 NA NA prediction 0.875209529193374 Functional Loss - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110737457 chr4:110737457 nonsynonymous SNV 0.980 3 21 hm7G_associated_SNPs_5735 0 0 1 0 1 GAR1 chr4:110737534 5'GT 110737534 Upstream 78bp 5551 chr20 56726071 56726071 1 + G A LUAD 56726071 + 56726051 56726091 41 GCTGAACGCATGAACCTTGTGGGTCAGGATGAGATCTGGTA GCTGAACGCATGAACCTTGTAGGTCAGGATGAGATCTGGTA Direct Loss 0.937596881811139 0 NA NA prediction 0.875193763622278 Functional Loss - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56726071 chr20:56726071 synonymous SNV . 0 21 hm7G_associated_SNPs_5736 0 0 0 0 1 C20orf85 chr20:56726088 5'GT 56726088 Upstream 18bp 5552 chr2 27730872 27730872 1 + G A GBM 27730872 + 27730852 27730892 41 ACGGAGGTGCAGACTATAGTGGAGCAGGTGAAAGAGAAGAC ACGGAGGTGCAGACTATAGTAGAGCAGGTGAAAGAGAAGAC Direct Loss 0.937592183426979 0 NA NA prediction 0.875184366853959 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27730872 chr2:27730872 synonymous SNV . 0 21 hm7G_associated_SNPs_5737 0 0 1 0 2 GCKR chr2:27730844 3'AG 27730844 Downstream 29bp 5553 chr2 27730872 27730872 1 + G A GBM 27730872 + 27730852 27730892 41 ACGGAGGTGCAGACTATAGTGGAGCAGGTGAAAGAGAAGAC ACGGAGGTGCAGACTATAGTAGAGCAGGTGAAAGAGAAGAC Direct Loss 0.937592183426979 0 NA NA prediction 0.875184366853959 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27730872 chr2:27730872 synonymous SNV . 0 21 hm7G_associated_SNPs_5737 0 0 1 0 2 GCKR chr2:27730941 5'GT 27730941 Upstream 70bp 5554 chr9 70993224 70993224 1 + G T BRCA 70993224 + 70993204 70993244 41 CATTCTAACAGCCAGCCACTGCCCTGGAGGACCAGGGGGAG CATTCTAACAGCCAGCCACTTCCCTGGAGGACCAGGGGGAG Direct Loss 0.937587581514816 0 NA NA prediction 0.875175163029632 Functional Loss - PGM5 ENSG00000154330 CDS Human protein_coding chr9:70993224 chr9:70993224 nonsynonymous SNV 0.988 1 21 hm7G_associated_SNPs_5738 0 0 0 0 1 PGM5 chr9:70993277 5'GT 70993277 Upstream 54bp 5555 chr7 6621830 6621830 1 + G T HNSC 6621830 + 6621810 6621850 41 TACCTTCTTCTGCCCTATCTGCTGCTAGGTGTAAACCTGTT TACCTTCTTCTGCCCTATCTTCTGCTAGGTGTAAACCTGTT Direct Loss 0.937582981590221 0 NA NA prediction 0.875165963180443 Functional Loss - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6621830 chr7:6621830 synonymous SNV . 0 21 hm7G_associated_SNPs_5740 0 0 1 0 1 ZDHHC4 chr7:6621882 5'GT 6621882 Upstream 53bp 5556 chr19 48284406 48284406 1 + G A OV 48284406 + 48284386 48284426 41 GCCACCGGGTTCTTTGAAGTGATGGTAGCCGGGAAGTTGAT GCCACCGGGTTCTTTGAAGTAATGGTAGCCGGGAAGTTGAT Direct Loss 0.937582363856236 0 NA NA prediction 0.875164727712471 Functional Loss - SELENOW ENSG00000178980 CDS Human protein_coding chr19:48284406 chr19:48284406 synonymous SNV . 0 21 hm7G_associated_SNPs_5741 0 0 1 0 2 SELENOW chr19:48284365 3'AG 48284365 Downstream 42bp 5557 chr19 48284406 48284406 1 + G A OV 48284406 + 48284386 48284426 41 GCCACCGGGTTCTTTGAAGTGATGGTAGCCGGGAAGTTGAT GCCACCGGGTTCTTTGAAGTAATGGTAGCCGGGAAGTTGAT Direct Loss 0.937582363856236 0 NA NA prediction 0.875164727712471 Functional Loss - SELENOW ENSG00000178980 CDS Human protein_coding chr19:48284406 chr19:48284406 synonymous SNV . 0 21 hm7G_associated_SNPs_5741 0 0 1 0 2 SELENOW chr19:48284439 5'GT 48284439 Upstream 34bp 5558 chrX 119500413 119500413 1 + G A UCEC 119500413 + 119500393 119500433 41 AAGCGAACCAGAACTACTTAGCAGATGAAGAGGAGGAAGCA AAGCGAACCAGAACTACTTAACAGATGAAGAGGAGGAAGCA Direct Loss 0.937571433695216 0 NA NA prediction 0.875142867390433 Functional Loss - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119500413 chrX:119500413 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5742 0 0 0 0 1 ATP1B4 chrX:119500380 3'AG 119500380 Downstream 34bp 5559 chr14 70442531 70442531 1 + G A SKCM 70442531 + 70442511 70442551 41 ATAAAACTCCTGTATGTTCAGGTACCGTAGGGAGGGGCGGG ATAAAACTCCTGTATGTTCAAGTACCGTAGGGAGGGGCGGG Direct Loss 0.937570933810857 0 NA NA prediction 0.875141867621714 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70442531 chr14:70442531 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5743 0 0 1 0 2 SMOC1 chr14:70442432 3'AG 70442432 Downstream 100bp 5560 chr14 70442531 70442531 1 + G A SKCM 70442531 + 70442511 70442551 41 ATAAAACTCCTGTATGTTCAGGTACCGTAGGGAGGGGCGGG ATAAAACTCCTGTATGTTCAAGTACCGTAGGGAGGGGCGGG Direct Loss 0.937570933810857 0 NA NA prediction 0.875141867621714 Functional Loss - SMOC1 ENSG00000198732 CDS Human protein_coding chr14:70442531 chr14:70442531 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5743 0 0 1 0 2 SMOC1 chr14:70442531 5'GT 70442531 Upstream 1bp 5561 chr7 24708201 24708201 1 + G T LUSC 24708201 + 24708181 24708221 41 AAACATTAGTATTGATAGGAGCTCAAGGTGTAGGCCGAAGA AAACATTAGTATTGATAGGATCTCAAGGTGTAGGCCGAAGA Direct Loss 0.937569479100773 0 NA NA prediction 0.875138958201546 Functional Loss - MPP6 ENSG00000105926 CDS Human protein_coding chr7:24708201 chr7:24708201 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5744 0 0 1 0 2 MPP6 chr7:24708118 3'AG 24708118 Downstream 84bp 5562 chr7 24708201 24708201 1 + G T LUSC 24708201 + 24708181 24708221 41 AAACATTAGTATTGATAGGAGCTCAAGGTGTAGGCCGAAGA AAACATTAGTATTGATAGGATCTCAAGGTGTAGGCCGAAGA Direct Loss 0.937569479100773 0 NA NA prediction 0.875138958201546 Functional Loss - MPP6 ENSG00000105926 CDS Human protein_coding chr7:24708201 chr7:24708201 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5744 0 0 1 0 2 MPP6 chr7:24708279 5'GT 24708279 Upstream 79bp 5563 chr5 140041772 140041772 1 + G A CESC 140041772 + 140041752 140041792 41 TTGTTTTTGCAGATCATTGAGAAGAGGAAGAAGATGGAAGC TTGTTTTTGCAGATCATTGAAAAGAGGAAGAAGATGGAAGC Direct Loss 0.93756481072235 0 NA NA prediction 0.875129621444699 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140041772 chr5:140041772 synonymous SNV . 0 21 hm7G_associated_SNPs_5745 0 0 1 0 2 IK chr5:140041764 3'AG 140041764 Downstream 9bp 5564 chr5 140041772 140041772 1 + G A CESC 140041772 + 140041752 140041792 41 TTGTTTTTGCAGATCATTGAGAAGAGGAAGAAGATGGAAGC TTGTTTTTGCAGATCATTGAAAAGAGGAAGAAGATGGAAGC Direct Loss 0.93756481072235 0 NA NA prediction 0.875129621444699 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140041772 chr5:140041772 synonymous SNV . 0 21 hm7G_associated_SNPs_5745 0 0 1 0 2 IK chr5:140041798 5'GT 140041798 Upstream 27bp 5565 chr7 75028241 75028241 1 + G A LIHC 75028241 + 75028221 75028261 41 GCTTGGCAGGTGAGCCTGCTGGAGCTGGAGGACCGGCTTCA GCTTGGCAGGTGAGCCTGCTAGAGCTGGAGGACCGGCTTCA Direct Loss 0.937533036726277 0 NA NA prediction 0.875066073452553 Functional Loss - TRIM73 ENSG00000178809 CDS Human protein_coding chr7:75028241 chr7:75028241 synonymous SNV . 0 21 hm7G_associated_SNPs_5750 0 0 1 0 1 TRIM73 chr7:75028200 3'AG 75028200 Downstream 42bp 5566 chr7 128850830 128850830 1 + G A UCEC 128850830 + 128850810 128850850 41 ACTGGGCAGAGTGACGATGAGCCAAAGCGGATCAAGAAGAG ACTGGGCAGAGTGACGATGAACCAAAGCGGATCAAGAAGAG Direct Loss 0.937519867828964 0 NA NA prediction 0.875039735657929 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128850830 chr7:128850830 synonymous SNV . 0 21 hm7G_associated_SNPs_5751 0 0 1 0 1 SMO chr7:128850806 3'AG 128850806 Downstream 25bp 5567 chr19 4028750 4028750 1 + G T COAD 4028750 + 4028730 4028770 41 TCCAATAAGCCCGGGGTGGAGCCCAAGAGGCCGTGCCGCCC TCCAATAAGCCCGGGGTGGATCCCAAGAGGCCGTGCCGCCC Direct Loss 0.937499323897918 0 NA NA prediction 0.874998647795835 Functional Loss - PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4028750 chr19:4028750 nonsynonymous SNV 0.857 2 21 hm7G_associated_SNPs_5752 0 0 0 0 2 PIAS4 chr19:4028718 3'AG 4028718 Downstream 33bp 5568 chr19 4028750 4028750 1 + G T COAD 4028750 + 4028730 4028770 41 TCCAATAAGCCCGGGGTGGAGCCCAAGAGGCCGTGCCGCCC TCCAATAAGCCCGGGGTGGATCCCAAGAGGCCGTGCCGCCC Direct Loss 0.937499323897918 0 NA NA prediction 0.874998647795835 Functional Loss - PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4028750 chr19:4028750 nonsynonymous SNV 0.857 2 21 hm7G_associated_SNPs_5752 0 0 0 0 2 PIAS4 chr19:4028846 5'GT 4028846 Upstream 97bp 5569 chr4 48490503 48490503 1 + G A HNSC 48490503 + 48490483 48490523 41 TTCATAATGACCGGCACTATGTTAGGACCTGAACTGCTGGC TTCATAATGACCGGCACTATATTAGGACCTGAACTGCTGGC Direct Loss 0.937495055679204 0 NA NA prediction 0.874990111358407 Functional Loss - SLC10A4 ENSG00000145248 CDS Human protein_coding chr4:48490503 chr4:48490503 nonsynonymous SNV 0.961 2 21 hm7G_associated_SNPs_5753 0 0 1 0 1 SLC10A4 chr4:48490444 3'AG 48490444 Downstream 60bp 5570 chr5 141018364 141018364 1 + G A COAD 141018364 + 141018344 141018384 41 ATCTCTTTCATCCTTCAGCTGAGGACGATGACATGAATGAG ATCTCTTTCATCCTTCAGCTAAGGACGATGACATGAATGAG Direct Loss 0.93749471213816 0 NA NA prediction 0.87498942427632 Functional Loss - RELL2 ENSG00000164620 CDS Human protein_coding chr5:141018364 chr5:141018364 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5754 0 0 0 0 2 RELL2 chr5:141018362 3'AG 141018362 Downstream 3bp 5571 chr5 141018364 141018364 1 + G A COAD 141018364 + 141018344 141018384 41 ATCTCTTTCATCCTTCAGCTGAGGACGATGACATGAATGAG ATCTCTTTCATCCTTCAGCTAAGGACGATGACATGAATGAG Direct Loss 0.93749471213816 0 NA NA prediction 0.87498942427632 Functional Loss - RELL2 ENSG00000164620 CDS Human protein_coding chr5:141018364 chr5:141018364 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5754 0 0 0 0 2 RELL2 chr5:141018427 5'GT 141018427 Upstream 64bp 5572 chr11 65650257 65650257 1 + G A LUSC 65650257 + 65650237 65650277 41 TGCTTATCTGCAGGCGGCCTGGCCAGTGAAAAGGACTACCC TGCTTATCTGCAGGCGGCCTAGCCAGTGAAAAGGACTACCC Direct Loss 0.937493264169936 0 NA NA prediction 0.874986528339873 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65650257 chr11:65650257 synonymous SNV . 0 21 hm7G_associated_SNPs_5755 0 0 0 0 1 CTSW chr11:65650250 3'AG 65650250 Downstream 8bp 5573 chr7 99008785 99008785 1 + G T UCEC 99008785 + 99008765 99008805 41 TGATTGAGCCAACACTGGATGAATTAGATCAAAAGATGAGA TGATTGAGCCAACACTGGATTAATTAGATCAAAAGATGAGA Direct Loss 0.937491314292837 0 NA NA prediction 0.874982628585674 Functional Loss - BUD31 ENSG00000106245 CDS Human protein_coding chr7:99008785 chr7:99008785 stopgain 1.000 1 21 hm7G_associated_SNPs_5756 0 0 1 0 2 BUD31 chr7:99008687 3'AG 99008687 Downstream 99bp 5574 chr7 99008785 99008785 1 + G T UCEC 99008785 + 99008765 99008805 41 TGATTGAGCCAACACTGGATGAATTAGATCAAAAGATGAGA TGATTGAGCCAACACTGGATTAATTAGATCAAAAGATGAGA Direct Loss 0.937491314292837 0 NA NA prediction 0.874982628585674 Functional Loss - BUD31 ENSG00000106245 CDS Human protein_coding chr7:99008785 chr7:99008785 stopgain 1.000 1 21 hm7G_associated_SNPs_5756 0 0 1 0 2 BUD31 chr7:99008809 5'GT 99008809 Upstream 25bp 5575 chr1 11253722 11253722 1 + G T UCEC 11253722 + 11253702 11253742 41 TGTCTCCTTCTACCGGGACTGGAAGCAGTACAAGCAGGGCT TGTCTCCTTCTACCGGGACTTGAAGCAGTACAAGCAGGGCT Direct Loss 0.937479527128055 0 NA NA prediction 0.87495905425611 Functional Loss - ANGPTL7 ENSG00000171819 CDS Human protein_coding chr1:11253722 chr1:11253722 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5758 0 0 0 0 1 ANGPTL7 chr1:11253637 3'AG 11253637 Downstream 86bp 5576 chr2 118588172 118588172 1 + G T UCEC 118588172 + 118588152 118588192 41 CTCCAGACGTCAACAGTAATGAAGGCAAGCAGAAAAAGCGA CTCCAGACGTCAACAGTAATTAAGGCAAGCAGAAAAAGCGA Direct Loss 0.937474962741073 0 NA NA prediction 0.874949925482145 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118588172 chr2:118588172 stopgain 0.140 0 21 hm7G_associated_SNPs_5759 0 0 1 0 1 DDX18 chr2:118588158 3'AG 118588158 Downstream 15bp 5577 chr11 47587496 47587496 1 + G T UCEC 47587496 + 47587476 47587516 41 GTGCGCGGGGTGATCACCATGAACGAGGAGTACGAGACGAG GTGCGCGGGGTGATCACCATTAACGAGGAGTACGAGACGAG Direct Loss 0.93746782816314 0 NA NA prediction 0.874935656326281 Functional Loss - PTPMT1 ENSG00000110536 CDS Human protein_coding chr11:47587496 chr11:47587496 stopgain 1.000 1 21 hm7G_associated_SNPs_5760 0 0 1 0 2 PTPMT1 chr11:47587458 3'AG 47587458 Downstream 39bp 5578 chr11 47587496 47587496 1 + G T UCEC 47587496 + 47587476 47587516 41 GTGCGCGGGGTGATCACCATGAACGAGGAGTACGAGACGAG GTGCGCGGGGTGATCACCATTAACGAGGAGTACGAGACGAG Direct Loss 0.93746782816314 0 NA NA prediction 0.874935656326281 Functional Loss - PTPMT1 ENSG00000110536 CDS Human protein_coding chr11:47587496 chr11:47587496 stopgain 1.000 1 21 hm7G_associated_SNPs_5760 0 0 1 0 2 PTPMT1 chr11:47587538 5'GT 47587538 Upstream 43bp 5579 chr6 108496093 108496093 1 + G A BLCA 108496093 + 108496073 108496113 41 CAGTGCAGGGCGTGTCGGCTGAAGAAGTGTTTGGAAGTCAA CAGTGCAGGGCGTGTCGGCTAAAGAAGTGTTTGGAAGTCAA Direct Loss 0.937464334679867 0 NA NA prediction 0.874928669359734 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108496093 chr6:108496093 synonymous SNV . 0 21 hm7G_associated_SNPs_5762 0 0 0 0 2 NR2E1 chr6:108496040 3'AG 108496040 Downstream 54bp 5580 chr6 108496093 108496093 1 + G A BLCA 108496093 + 108496073 108496113 41 CAGTGCAGGGCGTGTCGGCTGAAGAAGTGTTTGGAAGTCAA CAGTGCAGGGCGTGTCGGCTAAAGAAGTGTTTGGAAGTCAA Direct Loss 0.937464334679867 0 NA NA prediction 0.874928669359734 Functional Loss - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108496093 chr6:108496093 synonymous SNV . 0 21 hm7G_associated_SNPs_5762 0 0 0 0 2 NR2E1 chr6:108496127 5'GT 108496127 Upstream 35bp 5581 chr1 40209543 40209543 1 + G C CESC 40209543 + 40209523 40209563 41 AGTTTTCTGGGAAGACGCTTGAAGAGAATAAAGAGGAAGAA AGTTTTCTGGGAAGACGCTTCAAGAGAATAAAGAGGAAGAA Direct Loss 0.937461697367787 0 NA NA prediction 0.874923394735573 Functional Loss - PPIE ENSG00000084072 CDS Human protein_coding chr1:40209543 chr1:40209543 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5763 0 0 1 0 2 PPIE chr1:40209496 3'AG 40209496 Downstream 48bp 5582 chr1 40209543 40209543 1 + G C CESC 40209543 + 40209523 40209563 41 AGTTTTCTGGGAAGACGCTTGAAGAGAATAAAGAGGAAGAA AGTTTTCTGGGAAGACGCTTCAAGAGAATAAAGAGGAAGAA Direct Loss 0.937461697367787 0 NA NA prediction 0.874923394735573 Functional Loss - PPIE ENSG00000084072 CDS Human protein_coding chr1:40209543 chr1:40209543 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5763 0 0 1 0 2 PPIE chr1:40209596 5'GT 40209596 Upstream 54bp 5583 chr16 56485629 56485629 1 + G C CESC 56485629 + 56485609 56485649 41 GCTGTTACGGAAGAAACCTTGAAAAAGCAGGTGGCTGAGGC GCTGTTACGGAAGAAACCTTCAAAAAGCAGGTGGCTGAGGC Direct Loss 0.937459968034459 0 NA NA prediction 0.874919936068917 Functional Loss - OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56485629 chr16:56485629 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_5764 0 0 1 0 1 OGFOD1 chr16:56485678 5'GT 56485678 Upstream 50bp 5584 chr16 2017754 2017754 1 + G C CESC 2017754 + 2017734 2017774 41 CCTGTCCGTGCTGTAGGAAAGAGGTGAAAAGGAAAAAGGTT CCTGTCCGTGCTGTAGGAAACAGGTGAAAAGGAAAAAGGTT Direct Loss 0.937454225174635 0 NA NA prediction 0.87490845034927 Functional Loss - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2017754 chr16:2017754 nonsynonymous SNV 0.582 1 21 hm7G_associated_SNPs_5765 0 0 0 0 2 RNF151 chr16:2017726 3'AG 2017726 Downstream 29bp 5585 chr16 2017754 2017754 1 + G C CESC 2017754 + 2017734 2017774 41 CCTGTCCGTGCTGTAGGAAAGAGGTGAAAAGGAAAAAGGTT CCTGTCCGTGCTGTAGGAAACAGGTGAAAAGGAAAAAGGTT Direct Loss 0.937454225174635 0 NA NA prediction 0.87490845034927 Functional Loss - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2017754 chr16:2017754 nonsynonymous SNV 0.582 1 21 hm7G_associated_SNPs_5765 0 0 0 0 2 RNF151 chr16:2017822 5'GT 2017822 Upstream 69bp 5586 chrX 154327659 154327659 1 + G T UCEC 154327659 + 154327639 154327679 41 ATTGAGGGCCAGAAGGAAGAGGAAAGGTAGGAGGGCAAAAA ATTGAGGGCCAGAAGGAAGATGAAAGGTAGGAGGGCAAAAA Direct Loss 0.937451892369792 0 NA NA prediction 0.874903784739584 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154327659 chrX:154327659 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_5766 0 0 1 0 2 BRCC3 chrX:154327590 3'AG 154327590 Downstream 70bp 5587 chrX 154327659 154327659 1 + G T UCEC 154327659 + 154327639 154327679 41 ATTGAGGGCCAGAAGGAAGAGGAAAGGTAGGAGGGCAAAAA ATTGAGGGCCAGAAGGAAGATGAAAGGTAGGAGGGCAAAAA Direct Loss 0.937451892369792 0 NA NA prediction 0.874903784739584 Functional Loss - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154327659 chrX:154327659 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_5766 0 0 1 0 2 BRCC3 chrX:154327664 5'GT 154327664 Upstream 6bp 5588 chr7 73112001 73112001 1 + G T UCEC 73112001 + 73111981 73112021 41 GCATGGGTGCTGGAGAAGAAGGAGCGGCACAGGCGCCAGGG GCATGGGTGCTGGAGAAGAATGAGCGGCACAGGCGCCAGGG Direct Loss 0.937451492599256 0 NA NA prediction 0.874902985198511 Functional Loss - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73112001 chr7:73112001 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_5767 0 0 1 0 2 BUD23 chr7:73111935 3'AG 73111935 Downstream 67bp 5589 chr7 73112001 73112001 1 + G T UCEC 73112001 + 73111981 73112021 41 GCATGGGTGCTGGAGAAGAAGGAGCGGCACAGGCGCCAGGG GCATGGGTGCTGGAGAAGAATGAGCGGCACAGGCGCCAGGG Direct Loss 0.937451492599256 0 NA NA prediction 0.874902985198511 Functional Loss - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73112001 chr7:73112001 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_5767 0 0 1 0 2 BUD23 chr7:73112024 5'GT 73112024 Upstream 24bp 5590 chr15 43891079 43891079 1 + G A SKCM 43891079 + 43891059 43891099 41 GACTCCAAAAACGTGGTACTGGAGGAGTGGACACTGCTGCT GACTCCAAAAACGTGGTACTAGAGGAGTGGACACTGCTGCT Direct Loss 0.937451446302878 0 NA NA prediction 0.874902892605756 Functional Loss - CKMT1B ENSG00000237289 CDS Human protein_coding chr15:43891079 chr15:43891079 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5768 0 0 0 3 2 CKMT1B chr15:43891025 3'AG 43891025 Downstream 55bp 5591 chr15 43891079 43891079 1 + G A SKCM 43891079 + 43891059 43891099 41 GACTCCAAAAACGTGGTACTGGAGGAGTGGACACTGCTGCT GACTCCAAAAACGTGGTACTAGAGGAGTGGACACTGCTGCT Direct Loss 0.937451446302878 0 NA NA prediction 0.874902892605756 Functional Loss - CKMT1B ENSG00000237289 CDS Human protein_coding chr15:43891079 chr15:43891079 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5768 0 0 0 3 2 CKMT1B chr15:43891150 5'GT 43891150 Upstream 72bp 5592 chr3 183910898 183910898 1 + G C CESC 183910898 + 183910878 183910918 41 GTCCTTTTCCAGGGCGGCCTGAGGAGGAGTACCGTCACCAG GTCCTTTTCCAGGGCGGCCTCAGGAGGAGTACCGTCACCAG Direct Loss 0.937449587198611 0 NA NA prediction 0.874899174397222 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183910898 chr3:183910898 nonsynonymous SNV 0.858 2 21 hm7G_associated_SNPs_5769 0 0 1 0 1 ABCF3 chr3:183910890 3'AG 183910890 Downstream 9bp 5593 chr17 45785875 45785875 1 + G T rs201033701 45785875 + 45785855 45785895 41 TGCAGGAACAGGCCCGGAGTGGCGGTGAGATGGGGCAGGGC TGCAGGAACAGGCCCGGAGTTGCGGTGAGATGGGGCAGGGC Direct Loss 0.937443031042587 0 NA NA prediction 0.874886062085174 Functional Loss - TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45785875 chr17:45785875 nonsynonymous SNV 0.916 0 21 hm7G_associated_SNPs_5770 0 0 1 0 1 TBKBP1 chr17:45785878 5'GT 45785878 Upstream 4bp 5594 chr10 101502964 101502964 1 + G A BLCA 101502964 + 101502944 101502984 41 CCCAGTTTTTGTGATGATTCGGCCACGGGGAGGTGATTTTT CCCAGTTTTTGTGATGATTCAGCCACGGGGAGGTGATTTTT Direct Loss 0.937432731352327 0 NA NA prediction 0.874865462704653 Functional Loss - CUTC ENSG00000119929 CDS Human protein_coding chr10:101502964 chr10:101502964 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_5771 0 0 1 0 1 CUTC chr10:101502910 3'AG 101502910 Downstream 55bp 5595 chr14 77929041 77929041 1 + G T UCEC 77929041 + 77929021 77929061 41 AATCTCGTGGCCTTAATGAAGGAAGAAGGGGTGAAACTTCT AATCTCGTGGCCTTAATGAATGAAGAAGGGGTGAAACTTCT Direct Loss 0.937422929125756 0 NA NA prediction 0.874845858251511 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77929041 chr14:77929041 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5773 0 0 1 0 2 AHSA1 chr14:77928985 3'AG 77928985 Downstream 57bp 5596 chr14 77929041 77929041 1 + G T UCEC 77929041 + 77929021 77929061 41 AATCTCGTGGCCTTAATGAAGGAAGAAGGGGTGAAACTTCT AATCTCGTGGCCTTAATGAATGAAGAAGGGGTGAAACTTCT Direct Loss 0.937422929125756 0 NA NA prediction 0.874845858251511 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77929041 chr14:77929041 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5773 0 0 1 0 2 AHSA1 chr14:77929102 5'GT 77929102 Upstream 62bp 5597 chr17 4624301 4624301 1 + G A LUAD 4624301 + 4624281 4624321 41 CGGCTTCGGCTGAAGGGGATGAAGGATGACGACTATGATGA CGGCTTCGGCTGAAGGGGATAAAGGATGACGACTATGATGA Direct Loss 0.93742098220562 0 NA NA prediction 0.874841964411239 Functional Loss - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4624301 chr17:4624301 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5774 0 0 1 0 1 ARRB2 chr17:4624241 3'AG 4624241 Downstream 61bp 5598 chr18 63489400 63489400 1 + G T LUAD 63489400 + 63489380 63489420 41 TTCAGGCAAAGGATATGGTTGGTCAAAATGGAGGACTGTCA TTCAGGCAAAGGATATGGTTTGTCAAAATGGAGGACTGTCA Direct Loss 0.937391360451012 0 NA NA prediction 0.874782720902023 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63489400 chr18:63489400 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5778 0 0 1 0 2 CDH7 chr18:63489317 3'AG 63489317 Downstream 84bp 5599 chr18 63489400 63489400 1 + G T LUAD 63489400 + 63489380 63489420 41 TTCAGGCAAAGGATATGGTTGGTCAAAATGGAGGACTGTCA TTCAGGCAAAGGATATGGTTTGTCAAAATGGAGGACTGTCA Direct Loss 0.937391360451012 0 NA NA prediction 0.874782720902023 Functional Loss - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63489400 chr18:63489400 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5778 0 0 1 0 2 CDH7 chr18:63489484 5'GT 63489484 Upstream 85bp 5600 chr12 12980267 12980267 1 + G A LIHC 12980267 + 12980247 12980287 41 CAGGATGATGAGGTTATGATGCTGACAGAACGCGTCGCTGA CAGGATGATGAGGTTATGATACTGACAGAACGCGTCGCTGA Direct Loss 0.937381600764308 0 NA NA prediction 0.874763201528616 Functional Loss - DDX47 ENSG00000213782 CDS Human protein_coding chr12:12980267 chr12:12980267 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_5780 0 0 1 0 2 DDX47 chr12:12980180 3'AG 12980180 Downstream 88bp 5601 chr12 12980267 12980267 1 + G A LIHC 12980267 + 12980247 12980287 41 CAGGATGATGAGGTTATGATGCTGACAGAACGCGTCGCTGA CAGGATGATGAGGTTATGATACTGACAGAACGCGTCGCTGA Direct Loss 0.937381600764308 0 NA NA prediction 0.874763201528616 Functional Loss - DDX47 ENSG00000213782 CDS Human protein_coding chr12:12980267 chr12:12980267 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_5780 0 0 1 0 2 DDX47 chr12:12980309 5'GT 12980309 Upstream 43bp 5602 chr8 67813482 67813482 1 + G A rs139959817 67813482 + 67813462 67813502 41 TTGAATGTAGAATTCAGCTTGGAAGCAGAAAGAATGACCCA TTGAATGTAGAATTCAGCTTAGAAGCAGAAAGAATGACCCA Direct Loss 0.937371896403294 0 NA NA prediction 0.874743792806589 Functional Loss - MCMDC2 ENSG00000178460 CDS Human protein_coding chr8:67813482 chr8:67813482 synonymous SNV . 0 21 hm7G_associated_SNPs_5782 0 0 0 0 1 MCMDC2 chr8:67813441 3'AG 67813441 Downstream 42bp 5603 chr13 25285467 25285467 1 + G T READ 25285467 + 25285447 25285487 41 TGCTTCCAGGGCTCAGTACTGGTTTGTGGCTGTGCCGCACG TGCTTCCAGGGCTCAGTACTTGTTTGTGGCTGTGCCGCACG Direct Loss 0.937367370198672 0 NA NA prediction 0.874734740397344 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25285467 chr13:25285467 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5783 0 0 0 0 2 ATP12A chr13:25285456 3'AG 25285456 Downstream 12bp 5604 chr13 25285467 25285467 1 + G T READ 25285467 + 25285447 25285487 41 TGCTTCCAGGGCTCAGTACTGGTTTGTGGCTGTGCCGCACG TGCTTCCAGGGCTCAGTACTTGTTTGTGGCTGTGCCGCACG Direct Loss 0.937367370198672 0 NA NA prediction 0.874734740397344 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25285467 chr13:25285467 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5783 0 0 0 0 2 ATP12A chr13:25285547 5'GT 25285547 Upstream 81bp 5605 chr1 214501025 214501025 1 + G T LIHC 214501025 + 214501005 214501045 41 GTGACCTACAAAGGGACCCTGGCAGAAGTCAGAGCTGTACA GTGACCTACAAAGGGACCCTTGCAGAAGTCAGAGCTGTACA Direct Loss 0.93735785606957 0 NA NA prediction 0.874715712139141 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214501025 chr1:214501025 synonymous SNV . 0 21 hm7G_associated_SNPs_5785 0 0 1 0 1 SMYD2 chr1:214501067 5'GT 214501067 Upstream 43bp 5606 chr3 129007811 129007811 1 + G A BRCA 129007811 + 129007791 129007831 41 ATACTACCAACTGTCGTAGTGATACCGTAATGGAGAAACGG ATACTACCAACTGTCGTAGTAATACCGTAATGGAGAAACGG Direct Loss 0.9373414083769 0 NA NA prediction 0.8746828167538 Functional Loss - HMCES ENSG00000183624 CDS Human protein_coding chr3:129007811 chr3:129007811 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5788 0 0 0 0 1 HMCES chr3:129007840 5'GT 129007840 Upstream 30bp 5607 chr1 21804653 21804653 1 + G C BLCA 21804653 + 21804633 21804673 41 TCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGCCCCCCAG TCAGGAATCTGCAGGAGTCTCAAGAGGAGGAAGCCCCCCAG Direct Loss 0.937337937271034 0 NA NA prediction 0.874675874542068 Functional Loss - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21804653 chr1:21804653 nonsynonymous SNV 0.005 2 21 hm7G_associated_SNPs_5790 0 0 0 0 3 NBPF3 chr1:21804562 3'AG 21804562 Downstream 92bp 5608 chr1 21804653 21804653 1 + G C BLCA 21804653 + 21804633 21804673 41 TCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGCCCCCCAG TCAGGAATCTGCAGGAGTCTCAAGAGGAGGAAGCCCCCCAG Direct Loss 0.937337937271034 0 NA NA prediction 0.874675874542068 Functional Loss - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21804653 chr1:21804653 nonsynonymous SNV 0.005 2 21 hm7G_associated_SNPs_5790 0 0 0 0 3 NBPF3 chr1:21804637 3'AG 21804637 Downstream 17bp 5609 chr1 21804653 21804653 1 + G C BLCA 21804653 + 21804633 21804673 41 TCAGGAATCTGCAGGAGTCTGAAGAGGAGGAAGCCCCCCAG TCAGGAATCTGCAGGAGTCTCAAGAGGAGGAAGCCCCCCAG Direct Loss 0.937337937271034 0 NA NA prediction 0.874675874542068 Functional Loss - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21804653 chr1:21804653 nonsynonymous SNV 0.005 2 21 hm7G_associated_SNPs_5790 0 0 0 0 3 NBPF3 chr1:21804689 5'GT 21804689 Upstream 37bp 5610 chr19 41925110 41925110 1 + G C HNSC 41925110 + 41925090 41925130 41 TATGGCAACATCAGTGACTTGGGCAAGGGGCGCCAGATGCC TATGGCAACATCAGTGACTTCGGCAAGGGGCGCCAGATGCC Direct Loss 0.937330361348747 0 NA NA prediction 0.874660722697495 Functional Loss - BCKDHA ENSG00000248098;ENSG00000255730 CDS Human other chr19:41925110 chr19:41925110 nonsynonymous SNV 0.168 1 21 hm7G_associated_SNPs_5791 0 0 1 0 1 BCKDHA chr19:41925040 3'AG 41925040 Downstream 71bp 5611 chrX 118377191 118377191 1 + G A BRCA 118377191 + 118377171 118377211 41 CAGATGAGGAAGAACCAAAAGATGAGAGTGCCCGGAAAAAT CAGATGAGGAAGAACCAAAAAATGAGAGTGCCCGGAAAAAT Direct Loss 0.937328843823503 0 NA NA prediction 0.874657687647007 Functional Loss - PGRMC1 ENSG00000101856 CDS Human protein_coding chrX:118377191 chrX:118377191 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5792 0 0 1 0 1 PGRMC1 chrX:118377114 3'AG 118377114 Downstream 78bp 5612 chr11 69465976 69465976 1 + G T UCEC 69465976 + 69465956 69465996 41 ACATGGACCCCAAGGCCGCCGAGGAGGAGGAAGAGGAGGAG ACATGGACCCCAAGGCCGCCTAGGAGGAGGAAGAGGAGGAG Direct Loss 0.937327858157885 0 NA NA prediction 0.87465571631577 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69465976 chr11:69465976 stopgain 0.509 0 21 hm7G_associated_SNPs_5793 0 0 1 0 1 CCND1 chr11:69465886 3'AG 69465886 Downstream 91bp 5613 chr14 68191904 68191904 1 + G T LUAD 68191904 + 68191884 68191924 41 GATACAAAGAACTCCCAGGTGCTGGTGCGGAAATTGGACCT GATACAAAGAACTCCCAGGTTCTGGTGCGGAAATTGGACCT Direct Loss 0.937322555952484 0 NA NA prediction 0.874645111904968 Functional Loss - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191904 chr14:68191904 synonymous SNV . 0 21 hm7G_associated_SNPs_5794 0 0 0 0 2 RDH12 chr14:68191816 3'AG 68191816 Downstream 89bp 5614 chr14 68191904 68191904 1 + G T LUAD 68191904 + 68191884 68191924 41 GATACAAAGAACTCCCAGGTGCTGGTGCGGAAATTGGACCT GATACAAAGAACTCCCAGGTTCTGGTGCGGAAATTGGACCT Direct Loss 0.937322555952484 0 NA NA prediction 0.874645111904968 Functional Loss - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191904 chr14:68191904 synonymous SNV . 0 21 hm7G_associated_SNPs_5794 0 0 0 0 2 RDH12 chr14:68191971 5'GT 68191971 Upstream 68bp 5615 chr22 35779129 35779129 1 + G T KIRP 35779129 + 35779109 35779149 41 GATTTGTCAGAGGCCCTGAAGGAGGCCACCAAGGAGGTGCA GATTTGTCAGAGGCCCTGAATGAGGCCACCAAGGAGGTGCA Direct Loss 0.937316881049363 0 NA NA prediction 0.874633762098727 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35779129 chr22:35779129 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5796 0 0 1 0 2 HMOX1 chr22:35779099 3'AG 35779099 Downstream 31bp 5616 chr22 35779129 35779129 1 + G T KIRP 35779129 + 35779109 35779149 41 GATTTGTCAGAGGCCCTGAAGGAGGCCACCAAGGAGGTGCA GATTTGTCAGAGGCCCTGAATGAGGCCACCAAGGAGGTGCA Direct Loss 0.937316881049363 0 NA NA prediction 0.874633762098727 Functional Loss - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35779129 chr22:35779129 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5796 0 0 1 0 2 HMOX1 chr22:35779219 5'GT 35779219 Upstream 91bp 5617 chr17 4060161 4060161 1 + G T BRCA 4060161 + 4060141 4060181 41 TCTTTCCGTCTATCCTTAGTGGAGGTGTGAGCAGAGACTGG TCTTTCCGTCTATCCTTAGTTGAGGTGTGAGCAGAGACTGG Direct Loss 0.937311265384199 0 NA NA prediction 0.874622530768397 Functional Loss - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4060161 chr17:4060161 stopgain 0.762 1 21 hm7G_associated_SNPs_5797 0 0 0 0 1 CYB5D2 chr17:4060160 3'AG 4060160 Downstream 2bp 5618 chr19 15124564 15124564 1 + G A SKCM 15124564 + 15124544 15124584 41 AGGAAAATGGAGAGAGATATGGAAAAATCAGAGGTCCTACT AGGAAAATGGAGAGAGATATAGAAAAATCAGAGGTCCTACT Direct Loss 0.9373099648584 0 NA NA prediction 0.8746199297168 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15124564 chr19:15124564 nonsynonymous SNV 0.971 4 21 hm7G_associated_SNPs_5798 0 0 0 0 2 CCDC105 chr19:15124484 3'AG 15124484 Downstream 81bp 5619 chr19 15124564 15124564 1 + G A SKCM 15124564 + 15124544 15124584 41 AGGAAAATGGAGAGAGATATGGAAAAATCAGAGGTCCTACT AGGAAAATGGAGAGAGATATAGAAAAATCAGAGGTCCTACT Direct Loss 0.9373099648584 0 NA NA prediction 0.8746199297168 Functional Loss - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15124564 chr19:15124564 nonsynonymous SNV 0.971 4 21 hm7G_associated_SNPs_5798 0 0 0 0 2 CCDC105 chr19:15124588 5'GT 15124588 Upstream 25bp 5620 chr6 160828194 160828194 1 + G A SKCM 160828194 + 160828174 160828214 41 GCTTCCTGCAAGGTGTATTTGGAAAGGGGACGTGGATGACT GCTTCCTGCAAGGTGTATTTAGAAAGGGGACGTGGATGACT Direct Loss 0.937302410135102 0 NA NA prediction 0.874604820270204 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160828194 chr6:160828194 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5799 0 0 1 0 1 SLC22A3 chr6:160828227 5'GT 160828227 Upstream 34bp 5621 chr17 45299161 45299161 1 + G C LUAD 45299161 + 45299141 45299181 41 TGGAGGGCCTGCGTGTCTTTGACAAGGAGAGCAATGGCACG TGGAGGGCCTGCGTGTCTTTCACAAGGAGAGCAATGGCACG Direct Loss 0.937301508844623 0 NA NA prediction 0.874603017689247 Functional Loss - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299161 chr17:45299161 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_5800 0 0 1 0 1 MYL4 chr17:45299221 5'GT 45299221 Upstream 61bp 5622 chr6 44122464 44122464 1 + G A GBM 44122464 + 44122444 44122484 41 GTGCTGCAGGACTCAGAGGTGGACGGGGATGGGGATGGGGC GTGCTGCAGGACTCAGAGGTAGACGGGGATGGGGATGGGGC Direct Loss 0.93728170310397 0 NA NA prediction 0.87456340620794 Functional Loss - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44122464 chr6:44122464 synonymous SNV . 0 21 hm7G_associated_SNPs_5803 0 0 1 0 1 TMEM63B chr6:44122429 3'AG 44122429 Downstream 36bp 5623 chr11 114311384 114311384 1 + G T UCEC 114311384 + 114311364 114311404 41 ATTTTTAATTGCAGATGACAGGATTGGACATTGAGAAGGAC ATTTTTAATTGCAGATGACATGATTGGACATTGAGAAGGAC Direct Loss 0.937263277704032 0 NA NA prediction 0.874526555408065 Functional Loss - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114311384 chr11:114311384 stopgain 1.000 1 21 hm7G_associated_SNPs_5806 0 0 1 0 2 REXO2 chr11:114311378 3'AG 114311378 Downstream 7bp 5624 chr11 114311384 114311384 1 + G T UCEC 114311384 + 114311364 114311404 41 ATTTTTAATTGCAGATGACAGGATTGGACATTGAGAAGGAC ATTTTTAATTGCAGATGACATGATTGGACATTGAGAAGGAC Direct Loss 0.937263277704032 0 NA NA prediction 0.874526555408065 Functional Loss - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114311384 chr11:114311384 stopgain 1.000 1 21 hm7G_associated_SNPs_5806 0 0 1 0 2 REXO2 chr11:114311461 5'GT 114311461 Upstream 78bp 5625 chr1 150307476 150307476 1 + G A GBM 150307476 + 150307456 150307496 41 AGCAAGGGCGCACTGTAGATGCAACAGGCAAGGAGATTGAG AGCAAGGGCGCACTGTAGATACAACAGGCAAGGAGATTGAG Direct Loss 0.937245010394363 0 NA NA prediction 0.874490020788726 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150307476 chr1:150307476 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5808 0 0 1 0 1 PRPF3 chr1:150307406 3'AG 150307406 Downstream 71bp 5626 chr17 8350176 8350176 1 + G T PRAD 8350176 + 8350156 8350196 41 GAGCAGTTGCATAAGTATGTGAGAGAGCTGGAGCAGGCCAA GAGCAGTTGCATAAGTATGTTAGAGAGCTGGAGCAGGCCAA Direct Loss 0.937243775959984 0 NA NA prediction 0.874487551919968 Functional Loss - NDEL1 ENSG00000166579 CDS Human protein_coding chr17:8350176 chr17:8350176 synonymous SNV . 0 21 hm7G_associated_SNPs_5809 0 0 1 0 1 NDEL1 chr17:8350220 5'GT 8350220 Upstream 45bp 5627 chr17 686509 686509 1 + G T UCEC 686509 + 686489 686529 41 AAAGGTGTCAGCCTCATTAAGGTGAAATTTGAGGATATCAA AAAGGTGTCAGCCTCATTAATGTGAAATTTGAGGATATCAA Direct Loss 0.937221211115105 0 NA NA prediction 0.87444242223021 Functional Loss - MRM3 ENSG00000171861 CDS Human protein_coding chr17:686509 chr17:686509 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5812 0 0 1 0 1 MRM3 chr17:686567 5'GT 686567 Upstream 59bp 5628 chr1 156040024 156040024 1 + G T LUAD 156040024 + 156040004 156040044 41 ATCACTCTGGGCAGTGCCCAGGCTGGACAGGAGCCTGGCCC ATCACTCTGGGCAGTGCCCATGCTGGACAGGAGCCTGGCCC Direct Loss 0.937218044056998 0 NA NA prediction 0.874436088113996 Functional Loss - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156040024 chr1:156040024 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_5813 0 0 0 0 1 RAB25 chr1:156039951 3'AG 156039951 Downstream 74bp 5629 chr3 113514020 113514020 1 + G T LUSC 113514020 + 113514000 113514040 41 TGAAATGTCTTGGAAATCCTGAAAGAGAAGGGAGTGTCAGC TGAAATGTCTTGGAAATCCTTAAAGAGAAGGGAGTGTCAGC Direct Loss 0.937214556928069 0 NA NA prediction 0.874429113856139 Functional Loss - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113514020 chr3:113514020 stopgain 1.000 1 21 hm7G_associated_SNPs_5814 0 0 1 0 1 ATP6V1A chr3:113513937 3'AG 113513937 Downstream 84bp 5630 chr17 38172791 38172791 1 + G A COAD 38172791 + 38172771 38172811 41 TTCCTCTACCAGGGGCTCCTGCAGGCCCTGGAAGGGATCTC TTCCTCTACCAGGGGCTCCTACAGGCCCTGGAAGGGATCTC Direct Loss 0.937212889174606 0 NA NA prediction 0.874425778349212 Functional Loss - CSF3 ENSG00000108342 CDS Human protein_coding chr17:38172791 chr17:38172791 synonymous SNV . 0 21 hm7G_associated_SNPs_5816 0 0 0 0 2 CSF3 chr17:38172738 3'AG 38172738 Downstream 54bp 5631 chr17 38172791 38172791 1 + G A COAD 38172791 + 38172771 38172811 41 TTCCTCTACCAGGGGCTCCTGCAGGCCCTGGAAGGGATCTC TTCCTCTACCAGGGGCTCCTACAGGCCCTGGAAGGGATCTC Direct Loss 0.937212889174606 0 NA NA prediction 0.874425778349212 Functional Loss - CSF3 ENSG00000108342 CDS Human protein_coding chr17:38172791 chr17:38172791 synonymous SNV . 0 21 hm7G_associated_SNPs_5816 0 0 0 0 2 CSF3 chr17:38172884 5'GT 38172884 Upstream 94bp 5632 chr5 170818351 170818351 1 + G A CESC 170818351 + 170818331 170818371 41 AGGATGAGTTGCACATTGTTGAAGCAGAGGCAATGAATTAC AGGATGAGTTGCACATTGTTAAAGCAGAGGCAATGAATTAC Direct Loss 0.937210761324562 0 NA NA prediction 0.874421522649123 Functional Loss - NPM1 ENSG00000181163 CDS Human protein_coding chr5:170818351 chr5:170818351 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_5817 0 0 1 0 2 NPM1 chr5:170818309 3'AG 170818309 Downstream 43bp 5633 chr5 170818351 170818351 1 + G A CESC 170818351 + 170818331 170818371 41 AGGATGAGTTGCACATTGTTGAAGCAGAGGCAATGAATTAC AGGATGAGTTGCACATTGTTAAAGCAGAGGCAATGAATTAC Direct Loss 0.937210761324562 0 NA NA prediction 0.874421522649123 Functional Loss - NPM1 ENSG00000181163 CDS Human protein_coding chr5:170818351 chr5:170818351 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_5817 0 0 1 0 2 NPM1 chr5:170818428 5'GT 170818428 Upstream 78bp 5634 chr11 20676275 20676275 1 + G A PRAD 20676275 + 20676255 20676295 41 GCAGAGGCTGAAGTTGGTGTGCTCGCCACAGCCGGACTGGG GCAGAGGCTGAAGTTGGTGTACTCGCCACAGCCGGACTGGG Direct Loss 0.937208458809462 0 NA NA prediction 0.874416917618924 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20676275 chr11:20676275 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5819 0 0 0 0 1 SLC6A5 chr11:20676259 3'AG 20676259 Downstream 17bp 5635 chr2 196599625 196599625 1 + G A BLCA 196599625 + 196599605 196599645 41 AGCTTCCAGAAATGTTGCATGGTGATGGTGACAATGAAGAA AGCTTCCAGAAATGTTGCATAGTGATGGTGACAATGAAGAA Direct Loss 0.937179969059848 0 NA NA prediction 0.874359938119697 Functional Loss - SLC39A10 ENSG00000196950 CDS Human protein_coding chr2:196599625 chr2:196599625 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5820 0 0 1 0 1 SLC39A10 chr2:196599607 3'AG 196599607 Downstream 19bp 5636 chr7 150267047 150267047 1 + G A SKCM 150267047 + 150267027 150267067 41 GCACACCAGGGGCCAGTTATGGTGAGAGGGCATTCAGTGCT GCACACCAGGGGCCAGTTATAGTGAGAGGGCATTCAGTGCT Direct Loss 0.93716256570765 0 NA NA prediction 0.874325131415299 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267047 chr7:150267047 nonsynonymous SNV 0.090 2 21 hm7G_associated_SNPs_5823 0 0 0 0 3 GIMAP4 chr7:150266976 3'AG 150266976 Downstream 72bp 5637 chr7 150267047 150267047 1 + G A SKCM 150267047 + 150267027 150267067 41 GCACACCAGGGGCCAGTTATGGTGAGAGGGCATTCAGTGCT GCACACCAGGGGCCAGTTATAGTGAGAGGGCATTCAGTGCT Direct Loss 0.93716256570765 0 NA NA prediction 0.874325131415299 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267047 chr7:150267047 nonsynonymous SNV 0.090 2 21 hm7G_associated_SNPs_5823 0 0 0 0 3 GIMAP4 chr7:150267047 5'GT 150267047 Upstream 1bp 5638 chr7 150267047 150267047 1 + G A SKCM 150267047 + 150267027 150267067 41 GCACACCAGGGGCCAGTTATGGTGAGAGGGCATTCAGTGCT GCACACCAGGGGCCAGTTATAGTGAGAGGGCATTCAGTGCT Direct Loss 0.93716256570765 0 NA NA prediction 0.874325131415299 Functional Loss - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267047 chr7:150267047 nonsynonymous SNV 0.090 2 21 hm7G_associated_SNPs_5823 0 0 0 0 3 GIMAP4 chr7:150267089 5'GT 150267089 Upstream 43bp 5639 chr9 131455957 131455957 1 + G A COAD 131455957 + 131455937 131455977 41 TCAAACGCAGAATAAAGCCAGCAGGAAGAGGCAGCATGAGG TCAAACGCAGAATAAAGCCAACAGGAAGAGGCAGCATGAGG Direct Loss 0.937153713819685 0 NA NA prediction 0.87430742763937 Functional Loss - SET ENSG00000119335 CDS Human protein_coding chr9:131455957 chr9:131455957 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5825 0 0 1 1 1 SET chr9:131455917 3'AG 131455917 Downstream 41bp 5640 chr12 108086843 108086843 1 + G A LUAD 108086843 + 108086823 108086863 41 TTATAGTTTGTGGCCGAGCTGAACAGGACCAGTGCAATTTA TTATAGTTTGTGGCCGAGCTAAACAGGACCAGTGCAATTTA Direct Loss 0.937151905921592 0 NA NA prediction 0.874303811843185 Functional Loss - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086843 chr12:108086843 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5826 0 0 1 6 3 PWP1 chr12:108086749 3'AG 108086749 Downstream 95bp 5641 chr12 108086843 108086843 1 + G A LUAD 108086843 + 108086823 108086863 41 TTATAGTTTGTGGCCGAGCTGAACAGGACCAGTGCAATTTA TTATAGTTTGTGGCCGAGCTAAACAGGACCAGTGCAATTTA Direct Loss 0.937151905921592 0 NA NA prediction 0.874303811843185 Functional Loss - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086843 chr12:108086843 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5826 0 0 1 6 3 PWP1 chr12:108086777 3'AG 108086777 Downstream 67bp 5642 chr12 108086843 108086843 1 + G A LUAD 108086843 + 108086823 108086863 41 TTATAGTTTGTGGCCGAGCTGAACAGGACCAGTGCAATTTA TTATAGTTTGTGGCCGAGCTAAACAGGACCAGTGCAATTTA Direct Loss 0.937151905921592 0 NA NA prediction 0.874303811843185 Functional Loss - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108086843 chr12:108086843 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5826 0 0 1 6 3 PWP1 chr12:108086873 5'GT 108086873 Upstream 31bp 5643 chr2 70098953 70098953 1 + G C BLCA 70098953 + 70098933 70098973 41 GCTATCAAATACTTACACTTGAAAAGGATCAGGTATGTTCG GCTATCAAATACTTACACTTCAAAAGGATCAGGTATGTTCG Direct Loss 0.937140606205444 0 NA NA prediction 0.874281212410888 Functional Loss - GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70098953 chr2:70098953 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5828 0 0 1 0 2 GMCL1 chr2:70098877 3'AG 70098877 Downstream 77bp 5644 chr2 70098953 70098953 1 + G C BLCA 70098953 + 70098933 70098973 41 GCTATCAAATACTTACACTTGAAAAGGATCAGGTATGTTCG GCTATCAAATACTTACACTTCAAAAGGATCAGGTATGTTCG Direct Loss 0.937140606205444 0 NA NA prediction 0.874281212410888 Functional Loss - GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70098953 chr2:70098953 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5828 0 0 1 0 2 GMCL1 chr2:70098964 5'GT 70098964 Upstream 12bp 5645 chr1 163044180 163044180 1 + G C BLCA 163044180 + 163044160 163044200 41 AGCCTACAATAACCTGCTTTGATGAGGCCCAGAAGAAGATT AGCCTACAATAACCTGCTTTCATGAGGCCCAGAAGAAGATT Direct Loss 0.93713368900562 0 NA NA prediction 0.87426737801124 Functional Loss - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163044180 chr1:163044180 stoploss 0.996 4 21 hm7G_associated_SNPs_5829 0 0 0 0 1 RGS4 chr1:163044111 3'AG 163044111 Downstream 70bp 5646 chr9 131186890 131186890 1 + G T LUSC 131186890 + 131186870 131186910 41 TCGCCTATGCCTGCCAGGCTGCTGGTGAGGACCAGCCCTCC TCGCCTATGCCTGCCAGGCTTCTGGTGAGGACCAGCCCTCC Direct Loss 0.937127218878504 0 NA NA prediction 0.874254437757008 Functional Loss - CERCAM ENSG00000167123 CDS Human protein_coding chr9:131186890 chr9:131186890 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5831 0 0 1 0 1 CERCAM chr9:131186893 5'GT 131186893 Upstream 4bp 5647 chr4 160243593 160243593 1 + G A UCEC 160243593 + 160243573 160243613 41 GCTGTGATGGTGTTCGCAGTGGTGGAAAGAGCAGGGACCAT GCTGTGATGGTGTTCGCAGTAGTGGAAAGAGCAGGGACCAT Direct Loss 0.937123247851816 0 NA NA prediction 0.874246495703632 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160243593 chr4:160243593 synonymous SNV . 0 21 hm7G_associated_SNPs_5832 0 0 1 0 2 RAPGEF2 chr4:160243499 3'AG 160243499 Downstream 95bp 5648 chr4 160243593 160243593 1 + G A UCEC 160243593 + 160243573 160243613 41 GCTGTGATGGTGTTCGCAGTGGTGGAAAGAGCAGGGACCAT GCTGTGATGGTGTTCGCAGTAGTGGAAAGAGCAGGGACCAT Direct Loss 0.937123247851816 0 NA NA prediction 0.874246495703632 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160243593 chr4:160243593 synonymous SNV . 0 21 hm7G_associated_SNPs_5832 0 0 1 0 2 RAPGEF2 chr4:160243635 5'GT 160243635 Upstream 43bp 5649 chr8 136533515 136533515 1 + G A LUSC 136533515 + 136533495 136533535 41 AAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATCGATGTG AAAAAGGAGAAGGCAAGGATAAAGAAAAGTACATCGATGTG Direct Loss 0.937098035090818 0 NA NA prediction 0.874196070181636 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136533515 chr8:136533515 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5834 0 0 0 0 2 KHDRBS3 chr8:136533480 3'AG 136533480 Downstream 36bp 5650 chr8 136533515 136533515 1 + G A LUSC 136533515 + 136533495 136533535 41 AAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATCGATGTG AAAAAGGAGAAGGCAAGGATAAAGAAAAGTACATCGATGTG Direct Loss 0.937098035090818 0 NA NA prediction 0.874196070181636 Functional Loss - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136533515 chr8:136533515 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5834 0 0 0 0 2 KHDRBS3 chr8:136533598 5'GT 136533598 Upstream 84bp 5651 chr1 156038210 156038210 1 + G A LUAD 156038210 + 156038190 156038230 41 GGGTAACAAAAGTGACCTCAGCCAGGCCCGGGAAGTGCCCA GGGTAACAAAAGTGACCTCAACCAGGCCCGGGAAGTGCCCA Direct Loss 0.937088859805675 0 NA NA prediction 0.87417771961135 Functional Loss - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156038210 chr1:156038210 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_5836 0 0 0 0 1 RAB25 chr1:156038254 5'GT 156038254 Upstream 45bp 5652 chr18 8636254 8636254 1 + G A rs149427020 8636254 + 8636234 8636274 41 TGTGTGTTTCTTCTCAGTTTGCACAGCAGATCACTGGGATG TGTGTGTTTCTTCTCAGTTTACACAGCAGATCACTGGGATG Direct Loss 0.937087914968503 0 NA NA prediction 0.874175829937006 Functional Loss - RAB12 ENSG00000206418 CDS Human protein_coding chr18:8636254 chr18:8636254 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_5837 0 0 1 0 1 RAB12 chr18:8636251 3'AG 8636251 Downstream 4bp 5653 chr10 29581544 29581544 1 + G T LUAD 29581544 + 29581524 29581564 41 TGGCATCTTCCAGATCAACAGCTTCGCGTGGTGCAGACGCG TGGCATCTTCCAGATCAACATCTTCGCGTGGTGCAGACGCG Direct Loss 0.937076045252042 0 NA NA prediction 0.874152090504084 Functional Loss - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29581544 chr10:29581544 nonsynonymous SNV 0.977 4 21 hm7G_associated_SNPs_5839 0 0 0 0 2 LYZL1 chr10:29581448 3'AG 29581448 Downstream 97bp 5654 chr10 29581544 29581544 1 + G T LUAD 29581544 + 29581524 29581564 41 TGGCATCTTCCAGATCAACAGCTTCGCGTGGTGCAGACGCG TGGCATCTTCCAGATCAACATCTTCGCGTGGTGCAGACGCG Direct Loss 0.937076045252042 0 NA NA prediction 0.874152090504084 Functional Loss - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29581544 chr10:29581544 nonsynonymous SNV 0.977 4 21 hm7G_associated_SNPs_5839 0 0 0 0 2 LYZL1 chr10:29581606 5'GT 29581606 Upstream 63bp 5655 chr12 4719448 4719448 1 + G A UCEC 4719448 + 4719428 4719468 41 GACTTTCTCAGAAGGTGTTTGGTGTGAGTTTGTTGGGACAT GACTTTCTCAGAAGGTGTTTAGTGTGAGTTTGTTGGGACAT Direct Loss 0.937075507330662 0 NA NA prediction 0.874151014661324 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4719448 chr12:4719448 synonymous SNV . 0 21 hm7G_associated_SNPs_5840 0 0 1 0 1 DYRK4 chr12:4719450 5'GT 4719450 Upstream 3bp 5656 chr9 127637392 127637392 1 + G T COAD 127637392 + 127637372 127637412 41 AAGGCTTTGAGAAGCCCACAGAAAATAGCAGCGCAGTGTTA AAGGCTTTGAGAAGCCCACATAAAATAGCAGCGCAGTGTTA Direct Loss 0.937072742336541 0 NA NA prediction 0.874145484673082 Functional Loss - ARPC5L ENSG00000136950 CDS Human protein_coding chr9:127637392 chr9:127637392 stopgain 1.000 1 21 hm7G_associated_SNPs_5842 0 0 1 0 1 ARPC5L chr9:127637430 5'GT 127637430 Upstream 39bp 5657 chr15 72691037 72691037 1 + G A STAD 72691037 + 72691017 72691057 41 TCCAAGTGCCTCGATGTCATGCCAAAGGCAGCAGCAGCTTA TCCAAGTGCCTCGATGTCATACCAAAGGCAGCAGCAGCTTA Direct Loss 0.937067459968056 0 NA NA prediction 0.874134919936112 Functional Loss - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72691037 chr15:72691037 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_5843 0 0 0 0 1 TMEM202 chr15:72690994 3'AG 72690994 Downstream 44bp 5658 chr2 79255396 79255396 1 + G T UCEC 79255396 + 79255376 79255416 41 CCCTATGTCTGCAAGTTCAAGGACTAGGGCAGGTGGGAAGT CCCTATGTCTGCAAGTTCAATGACTAGGGCAGGTGGGAAGT Direct Loss 0.937066242526967 0 NA NA prediction 0.874132485053934 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255396 chr2:79255396 nonsynonymous SNV 0.883 1 21 hm7G_associated_SNPs_5844 0 0 0 0 1 REG3G chr2:79255335 3'AG 79255335 Downstream 62bp 5659 chr2 71191904 71191904 1 + G A rs368854893 71191904 + 71191884 71191924 41 GGGAAGGACGTGCAGGCCATGAAGGCAGTAGTTGGGGAGGA GGGAAGGACGTGCAGGCCATAAAGGCAGTAGTTGGGGAGGA Direct Loss 0.937065301923818 0 NA NA prediction 0.874130603847637 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71191904 chr2:71191904 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5845 1 0 0 0 1 ATP6V1B1 chr2:71191866 3'AG 71191866 Downstream 39bp 5660 chr8 24261570 24261570 1 + G A SKCM 24261570 + 24261550 24261590 41 GTAAACTGAAGCCTGGAACTGATTGCGGAGGAGATGCTCCA GTAAACTGAAGCCTGGAACTAATTGCGGAGGAGATGCTCCA Direct Loss 0.937061151251542 0 NA NA prediction 0.874122302503085 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24261570 chr8:24261570 nonsynonymous SNV 0.014 0 21 hm7G_associated_SNPs_5846 0 0 0 0 2 ADAMDEC1 chr8:24261516 3'AG 24261516 Downstream 55bp 5661 chr8 24261570 24261570 1 + G A SKCM 24261570 + 24261550 24261590 41 GTAAACTGAAGCCTGGAACTGATTGCGGAGGAGATGCTCCA GTAAACTGAAGCCTGGAACTAATTGCGGAGGAGATGCTCCA Direct Loss 0.937061151251542 0 NA NA prediction 0.874122302503085 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24261570 chr8:24261570 nonsynonymous SNV 0.014 0 21 hm7G_associated_SNPs_5846 0 0 0 0 2 ADAMDEC1 chr8:24261601 5'GT 24261601 Upstream 32bp 5662 chrX 47030588 47030588 1 + G T DLBC 47030588 + 47030568 47030608 41 GAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAG GAGGAGGAGGAGGAGGATGATGAGGAGGAGGAGAAGGCCAG Direct Loss 0.937050773026884 0 NA NA prediction 0.874101546053769 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030588 chrX:47030588 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_5848 0 0 0 0 2 RBM10 chrX:47030509 3'AG 47030509 Downstream 80bp 5663 chrX 47030588 47030588 1 + G T DLBC 47030588 + 47030568 47030608 41 GAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAG GAGGAGGAGGAGGAGGATGATGAGGAGGAGGAGAAGGCCAG Direct Loss 0.937050773026884 0 NA NA prediction 0.874101546053769 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030588 chrX:47030588 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_5848 0 0 0 0 2 RBM10 chrX:47030657 5'GT 47030657 Upstream 70bp 5664 chr19 18729019 18729019 1 + G A COAD 18729019 + 18728999 18729039 41 CAAGATCCGAGTCAAGACCAGCAGCAAGGCCAAGGTGGAGT CAAGATCCGAGTCAAGACCAACAGCAAGGCCAAGGTGGAGT Direct Loss 0.93704866678016 0 NA NA prediction 0.87409733356032 Functional Loss - TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729019 chr19:18729019 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5849 0 0 1 0 2 TMEM59L chr19:18728965 3'AG 18728965 Downstream 55bp 5665 chr19 18729019 18729019 1 + G A COAD 18729019 + 18728999 18729039 41 CAAGATCCGAGTCAAGACCAGCAGCAAGGCCAAGGTGGAGT CAAGATCCGAGTCAAGACCAACAGCAAGGCCAAGGTGGAGT Direct Loss 0.93704866678016 0 NA NA prediction 0.87409733356032 Functional Loss - TMEM59L ENSG00000105696 CDS Human protein_coding chr19:18729019 chr19:18729019 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5849 0 0 1 0 2 TMEM59L chr19:18729082 5'GT 18729082 Upstream 64bp 5666 chr1 104120397 104120397 1 + G A BLCA 104120397 + 104120377 104120417 41 AGCCTTTTACAAACTGGTATGATAATGGGAGCAACCAAGTG AGCCTTTTACAAACTGGTATAATAATGGGAGCAACCAAGTG Direct Loss 0.937045239885657 0 NA NA prediction 0.874090479771313 Functional Loss - AMY2B ENSG00000240038 CDS Human protein_coding chr1:104120397 chr1:104120397 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_5850 0 0 0 0 2 AMY2B chr1:104120342 3'AG 104120342 Downstream 56bp 5667 chr1 104120397 104120397 1 + G A BLCA 104120397 + 104120377 104120417 41 AGCCTTTTACAAACTGGTATGATAATGGGAGCAACCAAGTG AGCCTTTTACAAACTGGTATAATAATGGGAGCAACCAAGTG Direct Loss 0.937045239885657 0 NA NA prediction 0.874090479771313 Functional Loss - AMY2B ENSG00000240038 CDS Human protein_coding chr1:104120397 chr1:104120397 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_5850 0 0 0 0 2 AMY2B chr1:104120467 5'GT 104120467 Upstream 71bp 5668 chr16 57790379 57790379 1 + G A SKCM 57790379 + 57790359 57790399 41 GGTGTGGATATCAGCAGGGAGGAGAGGTGAGGGCAGCGCAT GGTGTGGATATCAGCAGGGAAGAGAGGTGAGGGCAGCGCAT Direct Loss 0.937044472144878 0 NA NA prediction 0.874088944289757 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57790379 chr16:57790379 synonymous SNV . 0 21 hm7G_associated_SNPs_5851 0 0 1 0 1 KATNB1 chr16:57790384 5'GT 57790384 Upstream 6bp 5669 chr11 1862288 1862288 1 + G T LUSC 1862288 + 1862268 1862308 41 ACATGAACCAGAAGCTATTTGATCTGCGGGGCAAGTTCAAG ACATGAACCAGAAGCTATTTTATCTGCGGGGCAAGTTCAAG Direct Loss 0.937039910049942 0 NA NA prediction 0.874079820099885 Functional Loss - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862288 chr11:1862288 nonsynonymous SNV 0.953 5 21 hm7G_associated_SNPs_5853 0 0 1 0 1 TNNI2 chr11:1862261 3'AG 1862261 Downstream 28bp 5670 chr1 231115007 231115007 1 + G T LUAD 231115007 + 231114987 231115027 41 CGAGACTATAACCACGGTGTGCTGAAGATAACCATCTGTGT CGAGACTATAACCACGGTGTTCTGAAGATAACCATCTGTGT Direct Loss 0.937037498267913 0 NA NA prediction 0.874074996535827 Functional Loss - ARV1 ENSG00000173409 CDS Human protein_coding chr1:231115007 chr1:231115007 synonymous SNV . 0 21 hm7G_associated_SNPs_5854 0 0 1 0 1 ARV1 chr1:231115025 5'GT 231115025 Upstream 19bp 5671 chr11 66407209 66407209 1 + G T rs113222915 66407209 + 66407189 66407229 41 AAGCTGTTCATCGGAAACCTGCCCCGGGAGGCTACAGAGCA AAGCTGTTCATCGGAAACCTTCCCCGGGAGGCTACAGAGCA Direct Loss 0.937035857627849 0 NA NA prediction 0.874071715255698 Functional Loss - RBM4 ENSG00000173933;ENSG00000248643 CDS Human protein_coding chr11:66407209 chr11:66407209 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_5855 0 0 1 0 1 RBM4 chr11:66407171 3'AG 66407171 Downstream 39bp 5672 chr6 4952529 4952529 1 + G T STAD 4952529 + 4952509 4952549 41 ATGCTGCTCAGTGGACGGAAGCTGACAGCGCAGGAGGCGTG ATGCTGCTCAGTGGACGGAATCTGACAGCGCAGGAGGCGTG Direct Loss 0.937022256670981 0 NA NA prediction 0.874044513341963 Functional Loss - CDYL ENSG00000153046 CDS Human protein_coding chr6:4952529 chr6:4952529 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_5857 0 0 1 0 1 CDYL chr6:4952500 3'AG 4952500 Downstream 30bp 5673 chr7 106827073 106827073 1 + G T GBM 106827073 + 106827053 106827093 41 GGCAAGATGTTGAAGATTTTGCTAGAGCTGAAGGCTGTGAT GGCAAGATGTTGAAGATTTTTCTAGAGCTGAAGGCTGTGAT Direct Loss 0.937015075796199 0 NA NA prediction 0.874030151592399 Functional Loss - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106827073 chr7:106827073 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5859 0 0 1 0 2 HBP1 chr7:106827014 3'AG 106827014 Downstream 60bp 5674 chr7 106827073 106827073 1 + G T GBM 106827073 + 106827053 106827093 41 GGCAAGATGTTGAAGATTTTGCTAGAGCTGAAGGCTGTGAT GGCAAGATGTTGAAGATTTTTCTAGAGCTGAAGGCTGTGAT Direct Loss 0.937015075796199 0 NA NA prediction 0.874030151592399 Functional Loss - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106827073 chr7:106827073 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_5859 0 0 1 0 2 HBP1 chr7:106827126 5'GT 106827126 Upstream 54bp 5675 chr12 85694949 85694949 1 + G T LUSC 85694949 + 85694929 85694969 41 CCAGATTCAGAACAATTTGTGGGCAGGAAATGCAAGTGGTG CCAGATTCAGAACAATTTGTTGGCAGGAAATGCAAGTGGTG Direct Loss 0.937006847606826 0 NA NA prediction 0.874013695213653 Functional Loss - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85694949 chr12:85694949 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5863 0 0 1 0 1 ALX1 chr12:85694933 3'AG 85694933 Downstream 17bp 5676 chr11 71946178 71946178 1 + G C BLCA 71946178 + 71946158 71946198 41 AGCTCAAACCAATTCTGGCTGATATCGAGTACCTGCAGGAC AGCTCAAACCAATTCTGGCTCATATCGAGTACCTGCAGGAC Direct Loss 0.937003197391815 0 NA NA prediction 0.87400639478363 Functional Loss - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946178 chr11:71946178 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_5865 0 0 1 0 2 INPPL1 chr11:71946160 3'AG 71946160 Downstream 19bp 5677 chr11 71946178 71946178 1 + G C BLCA 71946178 + 71946158 71946198 41 AGCTCAAACCAATTCTGGCTGATATCGAGTACCTGCAGGAC AGCTCAAACCAATTCTGGCTCATATCGAGTACCTGCAGGAC Direct Loss 0.937003197391815 0 NA NA prediction 0.87400639478363 Functional Loss - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71946178 chr11:71946178 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_5865 0 0 1 0 2 INPPL1 chr11:71946247 5'GT 71946247 Upstream 70bp 5678 chr19 829604 829604 1 + G A BLCA 829604 + 829584 829624 41 GTGCTGGGTGCCTATGACCTGAGGCGGCGGGAGAGGCAGTC GTGCTGGGTGCCTATGACCTAAGGCGGCGGGAGAGGCAGTC Direct Loss 0.937000329115576 0 NA NA prediction 0.874000658231151 Functional Loss - AZU1 ENSG00000172232 CDS Human protein_coding chr19:829604 chr19:829604 synonymous SNV . 0 21 hm7G_associated_SNPs_5867 0 0 0 0 1 AZU1 chr19:829562 3'AG 829562 Downstream 43bp 5679 chr3 111793247 111793247 1 + G A LUAD 111793247 + 111793227 111793267 41 ATTGTCCAGATGGAAGTGATGAAGAAGGCTGCAGTAAGTAG ATTGTCCAGATGGAAGTGATAAAGAAGGCTGCAGTAAGTAG Direct Loss 0.936985980207448 0 NA NA prediction 0.873971960414896 Functional Loss - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111793247 chr3:111793247 nonsynonymous SNV 0.865 5 21 hm7G_associated_SNPs_5869 0 0 0 0 1 TMPRSS7 chr3:111793259 5'GT 111793259 Upstream 13bp 5680 chr1 163317636 163317636 1 + G A LUSC 163317636 + 163317616 163317656 41 GAAAATTCGTTCAAAAGACTGATGATTGTGAAGAAGGAAAA GAAAATTCGTTCAAAAGACTAATGATTGTGAAGAAGGAAAA Direct Loss 0.936981667913917 0 NA NA prediction 0.873963335827835 Functional Loss - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163317636 chr1:163317636 synonymous SNV . 0 21 hm7G_associated_SNPs_5870 0 0 1 0 2 NUF2 chr1:163317553 3'AG 163317553 Downstream 84bp 5681 chr1 163317636 163317636 1 + G A LUSC 163317636 + 163317616 163317656 41 GAAAATTCGTTCAAAAGACTGATGATTGTGAAGAAGGAAAA GAAAATTCGTTCAAAAGACTAATGATTGTGAAGAAGGAAAA Direct Loss 0.936981667913917 0 NA NA prediction 0.873963335827835 Functional Loss - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163317636 chr1:163317636 synonymous SNV . 0 21 hm7G_associated_SNPs_5870 0 0 1 0 2 NUF2 chr1:163317728 5'GT 163317728 Upstream 93bp 5682 chr11 64806226 64806226 1 + G A LUAD 64806226 + 64806206 64806246 41 TCACCCAGGCCCTGCGGGATGAGAAGGCAGGCGCTTACGCT TCACCCAGGCCCTGCGGGATAAGAAGGCAGGCGCTTACGCT Direct Loss 0.936977113954278 0 NA NA prediction 0.873954227908556 Functional Loss - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64806226 chr11:64806226 nonsynonymous SNV 0.290 4 21 hm7G_associated_SNPs_5871 0 0 1 0 1 SNX15 chr11:64806301 5'GT 64806301 Upstream 76bp 5683 chr17 61907723 61907723 1 + G A CESC 61907723 + 61907703 61907743 41 GACCCATTAGTGTCACTGATGATGGTGGAGAAAGTACCAGA GACCCATTAGTGTCACTGATAATGGTGGAGAAAGTACCAGA Direct Loss 0.936967800619412 0 NA NA prediction 0.873935601238824 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61907723 chr17:61907723 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5872 0 0 1 0 1 PSMC5 chr17:61907631 3'AG 61907631 Downstream 93bp 5684 chr12 4409107 4409107 1 + G C LUSC 4409107 + 4409087 4409127 41 ACCGTCAGGACCAACGTGACGGATCCAAGTCGGAGGATGAA ACCGTCAGGACCAACGTGACCGATCCAAGTCGGAGGATGAA Direct Loss 0.936965282036321 0 NA NA prediction 0.873930564072642 Functional Loss - CCND2 ENSG00000118971 CDS Human protein_coding chr12:4409107 chr12:4409107 nonsynonymous SNV 0.382 0 21 hm7G_associated_SNPs_5873 0 0 1 0 1 CCND2 chr12:4409026 3'AG 4409026 Downstream 82bp 5685 chr11 1972205 1972205 1 + G A rs2240197 1972205 + 1972185 1972225 41 TCATTCAGCTGGTGCGGCCCGGTGTGGCCCAGCCCGAGGAC TCATTCAGCTGGTGCGGCCCAGTGTGGCCCAGCCCGAGGAC Direct Loss 0.936961690107355 0 NA NA prediction 0.87392338021471 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1972205 chr11:1972205 nonsynonymous SNV 0.053 2 21 hm7G_associated_SNPs_5874 0 0 1 0 2 MRPL23 chr11:1972129 3'AG 1972129 Downstream 77bp 5686 chr11 1972205 1972205 1 + G A rs2240197 1972205 + 1972185 1972225 41 TCATTCAGCTGGTGCGGCCCGGTGTGGCCCAGCCCGAGGAC TCATTCAGCTGGTGCGGCCCAGTGTGGCCCAGCCCGAGGAC Direct Loss 0.936961690107355 0 NA NA prediction 0.87392338021471 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1972205 chr11:1972205 nonsynonymous SNV 0.053 2 21 hm7G_associated_SNPs_5874 0 0 1 0 2 MRPL23 chr11:1972251 5'GT 1972251 Upstream 47bp 5687 chr20 57566483 57566483 1 + G A UCEC 57566483 + 57566463 57566503 41 TTGGCGTACGCAGCAAGCGTGGTTGAGACCTGGAAGAAGGT TTGGCGTACGCAGCAAGCGTAGTTGAGACCTGGAAGAAGGT Direct Loss 0.93695799174154 0 NA NA prediction 0.87391598348308 Functional Loss - NELFCD ENSG00000101158 CDS Human protein_coding chr20:57566483 chr20:57566483 synonymous SNV . 0 21 hm7G_associated_SNPs_5875 0 0 1 0 1 NELFCD chr20:57566501 5'GT 57566501 Upstream 19bp 5688 chr19 49416411 49416411 1 + G A UCEC 49416411 + 49416391 49416431 41 GCGGAGAGGAAGCTGGAAGAGCAACAGCGCCGGCACCGCGA GCGGAGAGGAAGCTGGAAGAACAACAGCGCCGGCACCGCGA Direct Loss 0.936953819469287 0 NA NA prediction 0.873907638938574 Functional Loss - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49416411 chr19:49416411 synonymous SNV . 0 21 hm7G_associated_SNPs_5876 0 0 1 0 1 NUCB1 chr19:49416453 5'GT 49416453 Upstream 43bp 5689 chr4 99342483 99342483 1 + G T LUSC 99342483 + 99342463 99342503 41 GGTGTGAAGCCAAAGATCATGCTGGTGTGATGGGGGAGTCA GGTGTGAAGCCAAAGATCATTCTGGTGTGATGGGGGAGTCA Direct Loss 0.936953162314765 0 NA NA prediction 0.87390632462953 Functional Loss - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99342483 chr4:99342483 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5877 0 0 1 0 3 RAP1GDS1 chr4:99342406 3'AG 99342406 Downstream 78bp 5690 chr4 99342483 99342483 1 + G T LUSC 99342483 + 99342463 99342503 41 GGTGTGAAGCCAAAGATCATGCTGGTGTGATGGGGGAGTCA GGTGTGAAGCCAAAGATCATTCTGGTGTGATGGGGGAGTCA Direct Loss 0.936953162314765 0 NA NA prediction 0.87390632462953 Functional Loss - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99342483 chr4:99342483 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5877 0 0 1 0 3 RAP1GDS1 chr4:99342409 3'AG 99342409 Downstream 75bp 5691 chr4 99342483 99342483 1 + G T LUSC 99342483 + 99342463 99342503 41 GGTGTGAAGCCAAAGATCATGCTGGTGTGATGGGGGAGTCA GGTGTGAAGCCAAAGATCATTCTGGTGTGATGGGGGAGTCA Direct Loss 0.936953162314765 0 NA NA prediction 0.87390632462953 Functional Loss - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99342483 chr4:99342483 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5877 0 0 1 0 3 RAP1GDS1 chr4:99342545 5'GT 99342545 Upstream 63bp 5692 chr1 26527522 26527522 1 + G A SKCM 26527522 + 26527502 26527542 41 AGTACAAGGAGATCCGAGATGAACTCAACATGTAGGGGAGG AGTACAAGGAGATCCGAGATAAACTCAACATGTAGGGGAGG Direct Loss 0.936949339593444 0 NA NA prediction 0.873898679186887 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26527522 chr1:26527522 nonsynonymous SNV 0.966 5 21 hm7G_associated_SNPs_5879 0 0 0 0 2 CATSPER4 chr1:26527532 5'GT 26527532 Upstream 11bp 5693 chr1 26527522 26527522 1 + G A SKCM 26527522 + 26527502 26527542 41 AGTACAAGGAGATCCGAGATGAACTCAACATGTAGGGGAGG AGTACAAGGAGATCCGAGATAAACTCAACATGTAGGGGAGG Direct Loss 0.936949339593444 0 NA NA prediction 0.873898679186887 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26527522 chr1:26527522 nonsynonymous SNV 0.966 5 21 hm7G_associated_SNPs_5879 0 0 0 0 2 CATSPER4 chr1:26527566 5'GT 26527566 Upstream 45bp 5694 chr12 122611848 122611848 1 + G A COAD 122611848 + 122611828 122611868 41 AAGAATTTCAAGGGCCTGAAGCTACAGTGGAGAGACAAGAT AAGAATTTCAAGGGCCTGAAACTACAGTGGAGAGACAAGAT Direct Loss 0.936943888863041 0 NA NA prediction 0.873887777726083 Functional Loss - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122611848 chr12:122611848 synonymous SNV . 0 21 hm7G_associated_SNPs_5880 0 0 1 0 1 MLXIP chr12:122611803 3'AG 122611803 Downstream 46bp 5695 chr1 173454628 173454628 1 + G T LUSC 173454628 + 173454608 173454648 41 GAGAAGGATGAAAAGGGCATGCCTGTGACAGCTCGTGTGGT GAGAAGGATGAAAAGGGCATTCCTGTGACAGCTCGTGTGGT Direct Loss 0.936940582241718 0 NA NA prediction 0.873881164483435 Functional Loss - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173454628 chr1:173454628 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_5881 0 0 1 0 1 PRDX6 chr1:173454646 5'GT 173454646 Upstream 19bp 5696 chr18 29055672 29055672 1 + G A SKCM 29055672 + 29055652 29055692 41 ATGACTGCTTGTTGATCTATGATAATGAAGGCGCAGATGCC ATGACTGCTTGTTGATCTATAATAATGAAGGCGCAGATGCC Direct Loss 0.936924857515436 0 NA NA prediction 0.873849715030873 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29055672 chr18:29055672 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_5885 0 0 0 0 1 DSG3 chr18:29055609 3'AG 29055609 Downstream 64bp 5697 chr17 61909089 61909089 1 + G A COAD 61909089 + 61909069 61909109 41 CCTTTTCCTGTTCAGGGCGTGTGCACAGAAGCTGGCATGTA CCTTTTCCTGTTCAGGGCGTATGCACAGAAGCTGGCATGTA Direct Loss 0.936914629518028 0 NA NA prediction 0.873829259036055 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61909089 chr17:61909089 synonymous SNV . 0 21 hm7G_associated_SNPs_5887 0 0 1 0 2 PSMC5 chr17:61909084 3'AG 61909084 Downstream 6bp 5698 chr17 61909089 61909089 1 + G A COAD 61909089 + 61909069 61909109 41 CCTTTTCCTGTTCAGGGCGTGTGCACAGAAGCTGGCATGTA CCTTTTCCTGTTCAGGGCGTATGCACAGAAGCTGGCATGTA Direct Loss 0.936914629518028 0 NA NA prediction 0.873829259036055 Functional Loss - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61909089 chr17:61909089 synonymous SNV . 0 21 hm7G_associated_SNPs_5887 0 0 1 0 2 PSMC5 chr17:61909170 5'GT 61909170 Upstream 82bp 5699 chr8 75924695 75924695 1 + G A UCEC 75924695 + 75924675 75924715 41 ATGTAGAGCTGGAAAGATCTGCAGAATCCTGGGCTGAAAGT ATGTAGAGCTGGAAAGATCTACAGAATCCTGGGCTGAAAGT Direct Loss 0.936907330933168 0 NA NA prediction 0.873814661866337 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75924695 chr8:75924695 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5889 0 0 1 0 2 CRISPLD1 chr8:75924668 3'AG 75924668 Downstream 28bp 5700 chr8 75924695 75924695 1 + G A UCEC 75924695 + 75924675 75924715 41 ATGTAGAGCTGGAAAGATCTGCAGAATCCTGGGCTGAAAGT ATGTAGAGCTGGAAAGATCTACAGAATCCTGGGCTGAAAGT Direct Loss 0.936907330933168 0 NA NA prediction 0.873814661866337 Functional Loss - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75924695 chr8:75924695 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5889 0 0 1 0 2 CRISPLD1 chr8:75924786 5'GT 75924786 Upstream 92bp 5701 chr15 49775424 49775424 1 + G A SKCM 49775424 + 49775404 49775444 41 AGTGAATTCTATCTTGCAATGAACAAGGAAGGAAAACTCTA AGTGAATTCTATCTTGCAATAAACAAGGAAGGAAAACTCTA Direct Loss 0.936907155996928 0 NA NA prediction 0.873814311993856 Functional Loss - FGF7 ENSG00000140285 CDS Human protein_coding chr15:49775424 chr15:49775424 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5890 0 0 0 0 2 FGF7 chr15:49775348 3'AG 49775348 Downstream 77bp 5702 chr15 49775424 49775424 1 + G A SKCM 49775424 + 49775404 49775444 41 AGTGAATTCTATCTTGCAATGAACAAGGAAGGAAAACTCTA AGTGAATTCTATCTTGCAATAAACAAGGAAGGAAAACTCTA Direct Loss 0.936907155996928 0 NA NA prediction 0.873814311993856 Functional Loss - FGF7 ENSG00000140285 CDS Human protein_coding chr15:49775424 chr15:49775424 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5890 0 0 0 0 2 FGF7 chr15:49775451 5'GT 49775451 Upstream 28bp 5703 chr14 97313603 97313603 1 + G T LUAD 97313603 + 97313583 97313623 41 TTAATTTGTAGTTCAGAAATGGATTCGTACCCGTAAGCTGA TTAATTTGTAGTTCAGAAATTGATTCGTACCCGTAAGCTGA Direct Loss 0.936905044214576 0 NA NA prediction 0.873810088429152 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97313603 chr14:97313603 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5891 0 0 1 0 2 VRK1 chr14:97313594 3'AG 97313594 Downstream 10bp 5704 chr14 97313603 97313603 1 + G T LUAD 97313603 + 97313583 97313623 41 TTAATTTGTAGTTCAGAAATGGATTCGTACCCGTAAGCTGA TTAATTTGTAGTTCAGAAATTGATTCGTACCCGTAAGCTGA Direct Loss 0.936905044214576 0 NA NA prediction 0.873810088429152 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97313603 chr14:97313603 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5891 0 0 1 0 2 VRK1 chr14:97313681 5'GT 97313681 Upstream 79bp 5705 chr16 66997715 66997715 1 + G A UCEC 66997715 + 66997695 66997735 41 ACCTCTGCAGGTCATGGTATGGGTCCATGGAGGCGCTCTGA ACCTCTGCAGGTCATGGTATAGGTCCATGGAGGCGCTCTGA Direct Loss 0.936903305429942 0 NA NA prediction 0.873806610859885 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997715 chr16:66997715 stopgain 0.770 0 21 hm7G_associated_SNPs_5892 0 0 0 0 1 CES3 chr16:66997705 3'AG 66997705 Downstream 11bp 5706 chr13 41642768 41642768 1 + G T UCEC 41642768 + 41642748 41642788 41 CGACATCAAATCAACAGAAAGAAAAGAAAGAAAAGAAGAAA CGACATCAAATCAACAGAAATAAAAGAAAGAAAAGAAGAAA Direct Loss 0.936891250165988 0 NA NA prediction 0.873782500331976 Functional Loss - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41642768 chr13:41642768 stopgain 0.998 0 21 hm7G_associated_SNPs_5894 0 0 1 0 1 WBP4 chr13:41642697 3'AG 41642697 Downstream 72bp 5707 chr19 41754471 41754471 1 + G T SARC 41754471 + 41754451 41754491 41 GAGAAGCTGCGGGATGTGATGGTGGACCGGCACAAGGTGGC GAGAAGCTGCGGGATGTGATTGTGGACCGGCACAAGGTGGC Direct Loss 0.936888207106877 0 NA NA prediction 0.873776414213755 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41754471 chr19:41754471 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_5895 0 0 0 0 1 AXL chr19:41754419 3'AG 41754419 Downstream 53bp 5708 chr10 111893160 111893160 1 + G C rs73352950 111893160 + 111893140 111893180 41 GTAAATGGCAAGGATGATATGCATGATGTTGAAGATGAGCT GTAAATGGCAAGGATGATATCCATGATGTTGAAGATGAGCT Direct Loss 0.936874105467421 0 NA NA prediction 0.873748210934841 Functional Loss - ADD3 ENSG00000148700 CDS Human protein_coding chr10:111893160 chr10:111893160 nonsynonymous SNV 0.991 0 21 hm7G_associated_SNPs_5896 0 0 1 0 1 ADD3 chr10:111893084 3'AG 111893084 Downstream 77bp 5709 chrX 70389160 70389160 1 + G A LUAD 70389160 + 70389140 70389180 41 CATTCACACCAAGGCCAACCGCTTTGAGGAAGTGGCCTGGT CATTCACACCAAGGCCAACCACTTTGAGGAAGTGGCCTGGT Direct Loss 0.936855130767958 0 NA NA prediction 0.873710261535917 Functional Loss - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70389160 chrX:70389160 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5899 0 0 0 0 1 NLGN3 chrX:70389104 3'AG 70389104 Downstream 57bp 5710 chr11 65648955 65648955 1 + G A STAD 65648955 + 65648935 65648975 41 AGGAGGAGGACTTGGGCACAGCTGAGTTTGGGGTGACTCCA AGGAGGAGGACTTGGGCACAACTGAGTTTGGGGTGACTCCA Direct Loss 0.936832472559141 0 NA NA prediction 0.873664945118281 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65648955 chr11:65648955 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_5900 0 0 0 0 2 CTSW chr11:65648878 3'AG 65648878 Downstream 78bp 5711 chr11 65648955 65648955 1 + G A STAD 65648955 + 65648935 65648975 41 AGGAGGAGGACTTGGGCACAGCTGAGTTTGGGGTGACTCCA AGGAGGAGGACTTGGGCACAACTGAGTTTGGGGTGACTCCA Direct Loss 0.936832472559141 0 NA NA prediction 0.873664945118281 Functional Loss - CTSW ENSG00000172543 CDS Human protein_coding chr11:65648955 chr11:65648955 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_5900 0 0 0 0 2 CTSW chr11:65648991 5'GT 65648991 Upstream 37bp 5712 chr17 8243449 8243449 1 + G A rs139370538 8243449 + 8243429 8243469 41 TCAGAGACCTGGAAAGGAAAGGAAGAGTGGGGAGGCAGGAT TCAGAGACCTGGAAAGGAAAAGAAGAGTGGGGAGGCAGGAT Direct Loss 0.936828704979903 0 NA NA prediction 0.873657409959806 Functional Loss - ODF4 ENSG00000184650 CDS Human protein_coding chr17:8243449 chr17:8243449 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_5901 0 0 0 0 1 ODF4 chr17:8243478 5'GT 8243478 Upstream 30bp 5713 chr14 97319453 97319453 1 + G A MESO 97319453 + 97319433 97319473 41 ACGAGCATGAGTATGTGCATGGAGATATCAAGGCCTCAAAT ACGAGCATGAGTATGTGCATAGAGATATCAAGGCCTCAAAT Direct Loss 0.936827958055152 0 NA NA prediction 0.873655916110305 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97319453 chr14:97319453 nonsynonymous SNV 0.979 4 21 hm7G_associated_SNPs_5902 0 0 1 0 2 VRK1 chr14:97319411 3'AG 97319411 Downstream 43bp 5714 chr14 97319453 97319453 1 + G A MESO 97319453 + 97319433 97319473 41 ACGAGCATGAGTATGTGCATGGAGATATCAAGGCCTCAAAT ACGAGCATGAGTATGTGCATAGAGATATCAAGGCCTCAAAT Direct Loss 0.936827958055152 0 NA NA prediction 0.873655916110305 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97319453 chr14:97319453 nonsynonymous SNV 0.979 4 21 hm7G_associated_SNPs_5902 0 0 1 0 2 VRK1 chr14:97319503 5'GT 97319503 Upstream 51bp 5715 chr2 198365864 198365864 1 + G A HNSC 198365864 + 198365844 198365884 41 TGGTTGAAAGGAGTGCTGCTGAAACTGTAACCAAAGGAGGC TGGTTGAAAGGAGTGCTGCTAAAACTGTAACCAAAGGAGGC Direct Loss 0.936813118425279 0 NA NA prediction 0.873626236850559 Functional Loss - HSPE1;HSPE1-MOB4 ENSG00000115541;ENSG00000270757 CDS Human other chr2:198365864 chr2:198365864 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_5903 0 0 1 0 2 HSPE1;HSPE1-MOB4 chr2:198365798 3'AG 198365798 Downstream 67bp 5716 chr2 198365864 198365864 1 + G A HNSC 198365864 + 198365844 198365884 41 TGGTTGAAAGGAGTGCTGCTGAAACTGTAACCAAAGGAGGC TGGTTGAAAGGAGTGCTGCTAAAACTGTAACCAAAGGAGGC Direct Loss 0.936813118425279 0 NA NA prediction 0.873626236850559 Functional Loss - HSPE1;HSPE1-MOB4 ENSG00000115541;ENSG00000270757 CDS Human other chr2:198365864 chr2:198365864 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_5903 0 0 1 0 2 HSPE1;HSPE1-MOB4 chr2:198365962 5'GT 198365962 Upstream 99bp 5717 chr14 67843249 67843249 1 + G A BLCA 67843249 + 67843229 67843269 41 AGAGGACTGCCTGGGTCTTTGATGACAAGTACAAGAGACCT AGAGGACTGCCTGGGTCTTTAATGACAAGTACAAGAGACCT Direct Loss 0.936812597639765 0 NA NA prediction 0.87362519527953 Functional Loss - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67843249 chr14:67843249 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5904 0 0 1 0 2 EIF2S1 chr14:67843156 3'AG 67843156 Downstream 94bp 5718 chr14 67843249 67843249 1 + G A BLCA 67843249 + 67843229 67843269 41 AGAGGACTGCCTGGGTCTTTGATGACAAGTACAAGAGACCT AGAGGACTGCCTGGGTCTTTAATGACAAGTACAAGAGACCT Direct Loss 0.936812597639765 0 NA NA prediction 0.87362519527953 Functional Loss - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67843249 chr14:67843249 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5904 0 0 1 0 2 EIF2S1 chr14:67843307 5'GT 67843307 Upstream 59bp 5719 chr5 60241142 60241142 1 + G A rs158921 60241142 + 60241122 60241162 41 TCGCTGTCAAGGGAAGTGAAGGAGCACGTGGGCACGGACCA TCGCTGTCAAGGGAAGTGAAAGAGCACGTGGGCACGGACCA Direct Loss 0.936808881582754 0 NA NA prediction 0.873617763165507 Functional Loss - NDUFAF2 ENSG00000164182 CDS Human protein_coding chr5:60241142 chr5:60241142 synonymous SNV . 0 21 hm7G_associated_SNPs_5905 4 0 1 0 1 NDUFAF2 chr5:60241209 5'GT 60241209 Upstream 68bp 5720 chrX 23697313 23697313 1 + G T LUSC 23697313 + 23697293 23697333 41 CTCGAAGACAAGGAGGACTTGGGCCAATAAGGATTCCACTT CTCGAAGACAAGGAGGACTTTGGCCAATAAGGATTCCACTT Direct Loss 0.936802427703175 0 NA NA prediction 0.87360485540635 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23697313 chrX:23697313 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5906 0 0 1 0 2 PRDX4 chrX:23697282 3'AG 23697282 Downstream 32bp 5721 chrX 23697313 23697313 1 + G T LUSC 23697313 + 23697293 23697333 41 CTCGAAGACAAGGAGGACTTGGGCCAATAAGGATTCCACTT CTCGAAGACAAGGAGGACTTTGGCCAATAAGGATTCCACTT Direct Loss 0.936802427703175 0 NA NA prediction 0.87360485540635 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23697313 chrX:23697313 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5906 0 0 1 0 2 PRDX4 chrX:23697404 5'GT 23697404 Upstream 92bp 5722 chr20 62664245 62664245 1 + G T BLCA 62664245 + 62664225 62664265 41 AGAGTGCAGAGCCTCGGCATGGGGAGCTGTGGTGCGCCGTG AGAGTGCAGAGCCTCGGCATTGGGAGCTGTGGTGCGCCGTG Direct Loss 0.936801787099074 0 NA NA prediction 0.873603574198148 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62664245 chr20:62664245 nonsynonymous SNV 0.248 4 21 hm7G_associated_SNPs_5907 0 0 1 0 1 PRPF6 chr20:62664194 3'AG 62664194 Downstream 52bp 5723 chr11 67048615 67048615 1 + G T STAD 67048615 + 67048595 67048635 41 TCATTGGGCGCGGGGGCTTTGGCGAGGTCTATGGGTGCCGG TCATTGGGCGCGGGGGCTTTTGCGAGGTCTATGGGTGCCGG Direct Loss 0.936791302076762 0 NA NA prediction 0.873582604153524 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67048615 chr11:67048615 nonsynonymous SNV 0.791 4 21 hm7G_associated_SNPs_5908 0 0 1 0 2 GRK2 chr11:67048564 3'AG 67048564 Downstream 52bp 5724 chr11 67048615 67048615 1 + G T STAD 67048615 + 67048595 67048635 41 TCATTGGGCGCGGGGGCTTTGGCGAGGTCTATGGGTGCCGG TCATTGGGCGCGGGGGCTTTTGCGAGGTCTATGGGTGCCGG Direct Loss 0.936791302076762 0 NA NA prediction 0.873582604153524 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67048615 chr11:67048615 nonsynonymous SNV 0.791 4 21 hm7G_associated_SNPs_5908 0 0 1 0 2 GRK2 chr11:67048655 5'GT 67048655 Upstream 41bp 5725 chr1 209880473 209880473 1 + G A GBM 209880473 + 209880453 209880493 41 TTGTCGTCTCCTCTCTGGCTGGTAAGTGGGACAGGGACATA TTGTCGTCTCCTCTCTGGCTAGTAAGTGGGACAGGGACATA Direct Loss 0.936786677650104 0 NA NA prediction 0.873573355300209 Functional Loss - HSD11B1 ENSG00000117594 CDS Human protein_coding chr1:209880473 chr1:209880473 nonsynonymous SNV 0.924 4 21 hm7G_associated_SNPs_5909 0 0 0 0 1 HSD11B1 chr1:209880473 5'GT 209880473 Upstream 1bp 5726 chr5 173531309 173531309 1 + G T LUAD 173531309 + 173531289 173531329 41 TTTACAAAGCCTTCACCTATGATCACAGCTGCCCAGAGGGA TTTACAAAGCCTTCACCTATTATCACAGCTGCCCAGAGGGA Direct Loss 0.936773072701092 0 NA NA prediction 0.873546145402183 Functional Loss - HMP19 ENSG00000170091 CDS Human protein_coding chr5:173531309 chr5:173531309 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_5910 0 0 0 0 2 HMP19 chr5:173531231 3'AG 173531231 Downstream 79bp 5727 chr5 173531309 173531309 1 + G T LUAD 173531309 + 173531289 173531329 41 TTTACAAAGCCTTCACCTATGATCACAGCTGCCCAGAGGGA TTTACAAAGCCTTCACCTATTATCACAGCTGCCCAGAGGGA Direct Loss 0.936773072701092 0 NA NA prediction 0.873546145402183 Functional Loss - HMP19 ENSG00000170091 CDS Human protein_coding chr5:173531309 chr5:173531309 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_5910 0 0 0 0 2 HMP19 chr5:173531341 5'GT 173531341 Upstream 33bp 5728 chr3 112063825 112063825 1 + G A STAD 112063825 + 112063805 112063845 41 ATAGTGCAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGTA ATAGTGCAAGTGGTGACCCAAGATGAAAGAGAGCAGCTGTA Direct Loss 0.936771439893118 0 NA NA prediction 0.873542879786236 Functional Loss - CD200 ENSG00000091972 CDS Human protein_coding chr3:112063825 chr3:112063825 synonymous SNV . 0 21 hm7G_associated_SNPs_5911 0 0 0 0 1 CD200 chr3:112063809 3'AG 112063809 Downstream 17bp 5729 chr7 73084430 73084430 1 + G C CESC 73084430 + 73084410 73084450 41 AAGAGGCGGAGCAGGAGGCAGAGGTGAGGGGAGGGGTGGCT AAGAGGCGGAGCAGGAGGCACAGGTGAGGGGAGGGGTGGCT Direct Loss 0.936765748176955 0 NA NA prediction 0.87353149635391 Functional Loss - VPS37D ENSG00000176428 CDS Human protein_coding chr7:73084430 chr7:73084430 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5912 0 0 1 0 2 VPS37D chr7:73084350 3'AG 73084350 Downstream 81bp 5730 chr7 73084430 73084430 1 + G C CESC 73084430 + 73084410 73084450 41 AAGAGGCGGAGCAGGAGGCAGAGGTGAGGGGAGGGGTGGCT AAGAGGCGGAGCAGGAGGCACAGGTGAGGGGAGGGGTGGCT Direct Loss 0.936765748176955 0 NA NA prediction 0.87353149635391 Functional Loss - VPS37D ENSG00000176428 CDS Human protein_coding chr7:73084430 chr7:73084430 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5912 0 0 1 0 2 VPS37D chr7:73084432 5'GT 73084432 Upstream 3bp 5731 chr20 62562306 62562306 1 + G A HNSC 62562306 + 62562286 62562326 41 AGTGTAAGCCCAAGGCGCCTGAAGGCGAGGAGACGGAGTTC AGTGTAAGCCCAAGGCGCCTAAAGGCGAGGAGACGGAGTTC Direct Loss 0.936760367591835 0 NA NA prediction 0.87352073518367 Functional Loss - DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62562306 chr20:62562306 nonsynonymous SNV 0.005 1 21 hm7G_associated_SNPs_5913 0 0 1 0 1 DNAJC5 chr20:62562375 5'GT 62562375 Upstream 70bp 5732 chr11 73625472 73625472 1 + G A ESCA 73625472 + 73625452 73625492 41 ATGCAGGTGAACGGGAGGTTGGAACAGAGGCCAAAATGCTG ATGCAGGTGAACGGGAGGTTAGAACAGAGGCCAAAATGCTG Direct Loss 0.936744308363661 0 NA NA prediction 0.873488616727321 Functional Loss - PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73625472 chr11:73625472 nonsynonymous SNV 0.983 4 21 hm7G_associated_SNPs_5915 0 0 0 1 1 PAAF1 chr11:73625458 3'AG 73625458 Downstream 15bp 5733 chr12 81112695 81112695 1 + G A SKCM 81112695 + 81112675 81112715 41 GATTGCTTATCCAACATAGTGGACCGGATCACCTCCTCAGA GATTGCTTATCCAACATAGTAGACCGGATCACCTCCTCAGA Direct Loss 0.936744274649418 0 NA NA prediction 0.873488549298837 Functional Loss - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112695 chr12:81112695 synonymous SNV . 0 21 hm7G_associated_SNPs_5916 0 0 0 0 1 MYF5 chr12:81112640 3'AG 81112640 Downstream 56bp 5734 chr20 33114078 33114078 1 + G T LUAD 33114078 + 33114058 33114098 41 CTTGTTTTCTGGCAGGCAGAGGTGGAGGAGACACTGAAGCG CTTGTTTTCTGGCAGGCAGATGTGGAGGAGACACTGAAGCG Direct Loss 0.936738807801492 0 NA NA prediction 0.873477615602984 Functional Loss - DYNLRB1 ENSG00000125971 CDS Human protein_coding chr20:33114078 chr20:33114078 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5918 0 0 1 0 1 DYNLRB1 chr20:33114148 5'GT 33114148 Upstream 71bp 5735 chr6 348810 348810 1 + G T rs148581187 348810 + 348790 348830 41 GAATATGGAGAGAGCCCTTTGCAGGATGCAGAAGAAGCCAA GAATATGGAGAGAGCCCTTTTCAGGATGCAGAAGAAGCCAA Direct Loss 0.936716321703479 0 NA NA prediction 0.873432643406958 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348810 chr6:348810 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_5921 0 0 1 0 2 DUSP22 chr6:348769 3'AG 348769 Downstream 42bp 5736 chr6 348810 348810 1 + G T rs148581187 348810 + 348790 348830 41 GAATATGGAGAGAGCCCTTTGCAGGATGCAGAAGAAGCCAA GAATATGGAGAGAGCCCTTTTCAGGATGCAGAAGAAGCCAA Direct Loss 0.936716321703479 0 NA NA prediction 0.873432643406958 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348810 chr6:348810 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_5921 0 0 1 0 2 DUSP22 chr6:348841 5'GT 348841 Upstream 32bp 5737 chr3 44761765 44761765 1 + G A UCEC 44761765 + 44761745 44761785 41 GATCTGTGGATGTTGAATATGCAAGGAGCTGAAGAGAGAGA GATCTGTGGATGTTGAATATACAAGGAGCTGAAGAGAGAGA Direct Loss 0.936703104928347 0 NA NA prediction 0.873406209856694 Functional Loss - ZNF502 ENSG00000196653 CDS Human protein_coding chr3:44761765 chr3:44761765 nonsynonymous SNV 0.948 0 21 hm7G_associated_SNPs_5924 0 0 1 0 1 ZNF502 chr3:44761808 5'GT 44761808 Upstream 44bp 5738 chr11 63276060 63276060 1 + G T rs144707121 63276060 + 63276040 63276080 41 ACGACGATTTTTGGAGGCCTGCATGCAGGCAAGATGGTCAT ACGACGATTTTTGGAGGCCTTCATGCAGGCAAGATGGTCAT Direct Loss 0.936691560497606 0 NA NA prediction 0.873383120995211 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276060 chr11:63276060 synonymous SNV . 0 21 hm7G_associated_SNPs_5927 0 0 0 0 2 LGALS12 chr11:63276025 3'AG 63276025 Downstream 36bp 5739 chr11 63276060 63276060 1 + G T rs144707121 63276060 + 63276040 63276080 41 ACGACGATTTTTGGAGGCCTGCATGCAGGCAAGATGGTCAT ACGACGATTTTTGGAGGCCTTCATGCAGGCAAGATGGTCAT Direct Loss 0.936691560497606 0 NA NA prediction 0.873383120995211 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276060 chr11:63276060 synonymous SNV . 0 21 hm7G_associated_SNPs_5927 0 0 0 0 2 LGALS12 chr11:63276113 5'GT 63276113 Upstream 54bp 5740 chr2 25038416 25038416 1 + G A rs144007254 25038416 + 25038396 25038436 41 TTTGTGTCTGCATCAGTACTGCTTTTGAGGGGAACCTATTG TTTGTGTCTGCATCAGTACTACTTTTGAGGGGAACCTATTG Direct Loss 0.936689270242972 0 NA NA prediction 0.873378540485944 Functional Loss - CENPO ENSG00000138092 CDS Human protein_coding chr2:25038416 chr2:25038416 nonsynonymous SNV 0.974 4 21 hm7G_associated_SNPs_5928 0 0 1 0 1 CENPO chr2:25038366 3'AG 25038366 Downstream 51bp 5741 chr2 63824576 63824576 1 + G T UCEC 63824576 + 63824556 63824596 41 GACGTTGCCTTCAAAGACCTGGATGTGGCCATTCTTGTGGG GACGTTGCCTTCAAAGACCTTGATGTGGCCATTCTTGTGGG Direct Loss 0.936678377003108 0 NA NA prediction 0.873356754006216 Functional Loss - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63824576 chr2:63824576 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_5930 0 0 1 0 1 MDH1 chr2:63824533 3'AG 63824533 Downstream 44bp 5742 chr12 93881354 93881354 1 + G T OV 93881354 + 93881334 93881374 41 CCAGATTGGAAGAAAAAGTTGAACACCTTGAGGAAGGACCT CCAGATTGGAAGAAAAAGTTTAACACCTTGAGGAAGGACCT Direct Loss 0.936677106060547 0 NA NA prediction 0.873354212121095 Functional Loss - MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93881354 chr12:93881354 stopgain 0.010 0 21 hm7G_associated_SNPs_5931 0 0 1 0 2 MRPL42 chr12:93881273 3'AG 93881273 Downstream 82bp 5743 chr12 93881354 93881354 1 + G T OV 93881354 + 93881334 93881374 41 CCAGATTGGAAGAAAAAGTTGAACACCTTGAGGAAGGACCT CCAGATTGGAAGAAAAAGTTTAACACCTTGAGGAAGGACCT Direct Loss 0.936677106060547 0 NA NA prediction 0.873354212121095 Functional Loss - MRPL42 ENSG00000198015 CDS Human protein_coding chr12:93881354 chr12:93881354 stopgain 0.010 0 21 hm7G_associated_SNPs_5931 0 0 1 0 2 MRPL42 chr12:93881436 5'GT 93881436 Upstream 83bp 5744 chr17 18138846 18138846 1 + G C LUSC 18138846 + 18138826 18138866 41 TCACAGCGAGGGCTGCTGCTGACGGGGTAGGTGTGCGTGCT TCACAGCGAGGGCTGCTGCTCACGGGGTAGGTGTGCGTGCT Direct Loss 0.936675211592584 0 NA NA prediction 0.873350423185168 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138846 chr17:18138846 synonymous SNV . 0 21 hm7G_associated_SNPs_5932 0 0 0 0 2 LLGL1 chr17:18138784 3'AG 18138784 Downstream 63bp 5745 chr17 18138846 18138846 1 + G C LUSC 18138846 + 18138826 18138866 41 TCACAGCGAGGGCTGCTGCTGACGGGGTAGGTGTGCGTGCT TCACAGCGAGGGCTGCTGCTCACGGGGTAGGTGTGCGTGCT Direct Loss 0.936675211592584 0 NA NA prediction 0.873350423185168 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138846 chr17:18138846 synonymous SNV . 0 21 hm7G_associated_SNPs_5932 0 0 0 0 2 LLGL1 chr17:18138851 5'GT 18138851 Upstream 6bp 5746 chr15 83486676 83486676 1 + G A UCEC 83486676 + 83486656 83486696 41 TTTTATAATCCAACAGGAATGCAGAAAGAAATGGAACAGGA TTTTATAATCCAACAGGAATACAGAAAGAAATGGAACAGGA Direct Loss 0.936674286551831 0 NA NA prediction 0.873348573103661 Functional Loss - WHAMM ENSG00000156232 CDS Human protein_coding chr15:83486676 chr15:83486676 nonsynonymous SNV 0.990 4 21 hm7G_associated_SNPs_5933 0 0 1 0 1 WHAMM chr15:83486672 3'AG 83486672 Downstream 5bp 5747 chr14 62244826 62244826 1 + G T COAD 62244826 + 62244806 62244846 41 CAAAAACTAATGATGGAGAAGAAAAAATGGAAGGAAATTCA CAAAAACTAATGATGGAGAATAAAAAATGGAAGGAAATTCA Direct Loss 0.93667397682639 0 NA NA prediction 0.87334795365278 Functional Loss - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62244826 chr14:62244826 stopgain 0.942 0 21 hm7G_associated_SNPs_5934 0 0 1 0 2 SNAPC1 chr14:62244790 3'AG 62244790 Downstream 37bp 5748 chr14 62244826 62244826 1 + G T COAD 62244826 + 62244806 62244846 41 CAAAAACTAATGATGGAGAAGAAAAAATGGAAGGAAATTCA CAAAAACTAATGATGGAGAATAAAAAATGGAAGGAAATTCA Direct Loss 0.93667397682639 0 NA NA prediction 0.87334795365278 Functional Loss - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62244826 chr14:62244826 stopgain 0.942 0 21 hm7G_associated_SNPs_5934 0 0 1 0 2 SNAPC1 chr14:62244858 5'GT 62244858 Upstream 33bp 5749 chr5 112868681 112868681 1 + G A UCEC 112868681 + 112868661 112868701 41 TCGCTGTGGCTGAAAGAGTTGCCGCAGAGAGACGGGAAAGG TCGCTGTGGCTGAAAGAGTTACCGCAGAGAGACGGGAAAGG Direct Loss 0.936671705186877 0 NA NA prediction 0.873343410373755 Functional Loss - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868681 chr5:112868681 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_5935 0 0 1 0 1 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 62bp 5750 chr1 45232829 45232829 1 + G T UCEC 45232829 + 45232809 45232849 41 GCAGGCTAGCAGACAAATAAGCAGCAAGAAACGGCCCCAGT GCAGGCTAGCAGACAAATAATCAGCAAGAAACGGCCCCAGT Direct Loss 0.936669169642273 0 NA NA prediction 0.873338339284546 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45232829 chr1:45232829 nonsynonymous SNV 0.983 0 21 hm7G_associated_SNPs_5937 0 0 0 0 1 KIF2C chr1:45232769 3'AG 45232769 Downstream 61bp 5751 chr17 6940065 6940065 1 + G A rs3744396 6940065 + 6940045 6940085 41 GGCCCGGTAGGCAGTGCCCTGAGCACGAAGTTCGGGCCCAG GGCCCGGTAGGCAGTGCCCTAAGCACGAAGTTCGGGCCCAG Direct Loss 0.936656397491825 0 NA NA prediction 0.87331279498365 Functional Loss - SLC16A13 ENSG00000174327 CDS Human protein_coding chr17:6940065 chr17:6940065 synonymous SNV . 0 21 hm7G_associated_SNPs_5938 0 0 1 0 1 SLC16A13 chr17:6940046 3'AG 6940046 Downstream 20bp 5752 chr3 9979321 9979321 1 + G A BLCA 9979321 + 9979301 9979341 41 TGCCACCGCCTGCTGGAGCTGAGTGAGGAGCTGGTGGAGAG TGCCACCGCCTGCTGGAGCTAAGTGAGGAGCTGGTGGAGAG Direct Loss 0.936640372132226 0 NA NA prediction 0.873280744264451 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9979321 chr3:9979321 synonymous SNV . 0 21 hm7G_associated_SNPs_5940 0 0 1 0 2 CRELD1 chr3:9979246 3'AG 9979246 Downstream 76bp 5753 chr3 9979321 9979321 1 + G A BLCA 9979321 + 9979301 9979341 41 TGCCACCGCCTGCTGGAGCTGAGTGAGGAGCTGGTGGAGAG TGCCACCGCCTGCTGGAGCTAAGTGAGGAGCTGGTGGAGAG Direct Loss 0.936640372132226 0 NA NA prediction 0.873280744264451 Functional Loss - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9979321 chr3:9979321 synonymous SNV . 0 21 hm7G_associated_SNPs_5940 0 0 1 0 2 CRELD1 chr3:9979356 5'GT 9979356 Upstream 36bp 5754 chr12 53700059 53700059 1 + G A KIRC 53700059 + 53700039 53700079 41 TTCTACCAACACAGCTGGCTGCCAGCCCGGGCCTTGGTGGA TTCTACCAACACAGCTGGCTACCAGCCCGGGCCTTGGTGGA Direct Loss 0.936639696176982 0 NA NA prediction 0.873279392353964 Functional Loss - C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700059 chr12:53700059 synonymous SNV . 0 21 hm7G_associated_SNPs_5941 0 0 1 0 2 C12orf10 chr12:53699982 3'AG 53699982 Downstream 78bp 5755 chr12 53700059 53700059 1 + G A KIRC 53700059 + 53700039 53700079 41 TTCTACCAACACAGCTGGCTGCCAGCCCGGGCCTTGGTGGA TTCTACCAACACAGCTGGCTACCAGCCCGGGCCTTGGTGGA Direct Loss 0.936639696176982 0 NA NA prediction 0.873279392353964 Functional Loss - C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700059 chr12:53700059 synonymous SNV . 0 21 hm7G_associated_SNPs_5941 0 0 1 0 2 C12orf10 chr12:53700104 5'GT 53700104 Upstream 46bp 5756 chr14 23946758 23946758 1 + G A BLCA 23946758 + 23946738 23946778 41 GAAGATACCTCAGAAAGGTCGGAAGAAAAAAGGTCAGTGAA GAAGATACCTCAGAAAGGTCAGAAGAAAAAAGGTCAGTGAA Direct Loss 0.936634817871179 0 NA NA prediction 0.873269635742358 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946758 chr14:23946758 nonsynonymous SNV 0.982 0 21 hm7G_associated_SNPs_5944 0 0 1 0 2 NGDN chr14:23946712 3'AG 23946712 Downstream 47bp 5757 chr14 23946758 23946758 1 + G A BLCA 23946758 + 23946738 23946778 41 GAAGATACCTCAGAAAGGTCGGAAGAAAAAAGGTCAGTGAA GAAGATACCTCAGAAAGGTCAGAAGAAAAAAGGTCAGTGAA Direct Loss 0.936634817871179 0 NA NA prediction 0.873269635742358 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946758 chr14:23946758 nonsynonymous SNV 0.982 0 21 hm7G_associated_SNPs_5944 0 0 1 0 2 NGDN chr14:23946769 5'GT 23946769 Upstream 12bp 5758 chr7 100212599 100212599 1 + G A COAD 100212599 + 100212579 100212619 41 GACGAACTCGGCAGCCAGCTGCCTCAAGTCCTGCACGTCTC GACGAACTCGGCAGCCAGCTACCTCAAGTCCTGCACGTCTC Direct Loss 0.936634431488522 0 NA NA prediction 0.873268862977043 Functional Loss - MOSPD3 ENSG00000106330 CDS Human protein_coding chr7:100212599 chr7:100212599 synonymous SNV . 0 21 hm7G_associated_SNPs_5945 0 0 1 0 1 MOSPD3 chr7:100212654 5'GT 100212654 Upstream 56bp 5759 chr5 41929926 41929926 1 + G A COAD 41929926 + 41929906 41929946 41 GATTTGCTATGTTTGGACCAGGTTTGGAAGAATTGAATACC GATTTGCTATGTTTGGACCAAGTTTGGAAGAATTGAATACC Direct Loss 0.936622718714972 0 NA NA prediction 0.873245437429944 Functional Loss - FBXO4 ENSG00000151876 CDS Human protein_coding chr5:41929926 chr5:41929926 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5946 0 0 1 0 1 FBXO4 chr5:41930019 5'GT 41930019 Upstream 94bp 5760 chr15 77759617 77759617 1 + G T BLCA 77759617 + 77759597 77759637 41 TCACAAGGATGTTAGGCAATGAATGGAGTAAACTGCCTCCT TCACAAGGATGTTAGGCAATTAATGGAGTAAACTGCCTCCT Direct Loss 0.936613469698452 0 NA NA prediction 0.873226939396905 Functional Loss - HMG20A ENSG00000140382 CDS Human protein_coding chr15:77759617 chr15:77759617 stopgain 1.000 1 21 hm7G_associated_SNPs_5947 0 0 1 0 1 HMG20A chr15:77759649 5'GT 77759649 Upstream 33bp 5761 chr3 179292168 179292168 1 + G C LUSC 179292168 + 179292148 179292188 41 TCTTCTCAAGTGGAATACTAGAGCAAAGAGAGAGAAACTGA TCTTCTCAAGTGGAATACTACAGCAAAGAGAGAGAAACTGA Direct Loss 0.936608464913366 0 NA NA prediction 0.873216929826732 Functional Loss - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179292168 chr3:179292168 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5949 0 0 1 0 1 ACTL6A chr3:179292158 3'AG 179292158 Downstream 11bp 5762 chr20 9496676 9496676 1 + G C CESC 9496676 + 9496656 9496696 41 GAACAGGCCGATATCGCATTGACCCGGGGAGCTGAGGTGAA GAACAGGCCGATATCGCATTCACCCGGGGAGCTGAGGTGAA Direct Loss 0.936602072248447 0 NA NA prediction 0.873204144496893 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496676 chr20:9496676 nonsynonymous SNV 0.879 2 21 hm7G_associated_SNPs_5950 0 0 0 0 1 LAMP5 chr20:9496647 3'AG 9496647 Downstream 30bp 5763 chr17 73017020 73017020 1 + G T UCEC 73017020 + 73017000 73017040 41 GTCTTTTTGTTTTCAGGATAGAAAACATGAATCGGGAAAGG GTCTTTTTGTTTTCAGGATATAAAACATGAATCGGGAAAGG Direct Loss 0.936592477087998 0 NA NA prediction 0.873184954175995 Functional Loss - MRPL58;MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73017020 chr17:73017020 stopgain 1.000 1 21 hm7G_associated_SNPs_5951 0 0 1 0 1 MRPL58 chr17:73017016 3'AG 73017016 Downstream 5bp 5764 chr4 68447073 68447073 1 + G C rs149803575 68447073 + 68447053 68447093 41 CCTGGGCAAGTAATTAAACTGCATGAAGTCCTAGAGAGAGA CCTGGGCAAGTAATTAAACTCCATGAAGTCCTAGAGAGAGA Direct Loss 0.936586391583634 0 NA NA prediction 0.873172783167268 Functional Loss - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68447073 chr4:68447073 synonymous SNV . 0 21 hm7G_associated_SNPs_5952 0 0 1 0 1 STAP1 chr4:68447023 3'AG 68447023 Downstream 51bp 5765 chr22 32498078 32498078 1 + G A LUAD 32498078 + 32498058 32498098 41 TGATTACTGAGTTTGCTTATGGAACCGGGAGCTGCATGGAG TGATTACTGAGTTTGCTTATAGAACCGGGAGCTGCATGGAG Direct Loss 0.936581332953456 0 NA NA prediction 0.873162665906913 Functional Loss - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32498078 chr22:32498078 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_5953 0 0 0 0 1 SLC5A1 chr22:32498009 3'AG 32498009 Downstream 70bp 5766 chr16 29809773 29809773 1 + G A UCEC 29809773 + 29809753 29809793 41 CAGCCCATCCTAAGGCACTTGCTGGAAGGGCAGAATGCCAG CAGCCCATCCTAAGGCACTTACTGGAAGGGCAGAATGCCAG Direct Loss 0.936577346391481 0 NA NA prediction 0.873154692782961 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29809773 chr16:29809773 synonymous SNV . 0 21 hm7G_associated_SNPs_5954 0 0 1 0 2 KIF22 chr16:29809695 3'AG 29809695 Downstream 79bp 5767 chr16 29809773 29809773 1 + G A UCEC 29809773 + 29809753 29809793 41 CAGCCCATCCTAAGGCACTTGCTGGAAGGGCAGAATGCCAG CAGCCCATCCTAAGGCACTTACTGGAAGGGCAGAATGCCAG Direct Loss 0.936577346391481 0 NA NA prediction 0.873154692782961 Functional Loss - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29809773 chr16:29809773 synonymous SNV . 0 21 hm7G_associated_SNPs_5954 0 0 1 0 2 KIF22 chr16:29809822 5'GT 29809822 Upstream 50bp 5768 chr4 25314478 25314478 1 + G A PRAD 25314478 + 25314458 25314498 41 AGCCGTGGAGGCAGAGGGCAGCGCAGGGTGCCGGGGAAGCT AGCCGTGGAGGCAGAGGGCAACGCAGGGTGCCGGGGAAGCT Direct Loss 0.936560594744022 0 NA NA prediction 0.873121189488043 Functional Loss - ZCCHC4 ENSG00000168228 CDS Human protein_coding chr4:25314478 chr4:25314478 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_5957 0 0 1 0 1 ZCCHC4 chr4:25314558 5'GT 25314558 Upstream 81bp 5769 chr3 100021021 100021021 1 + G T LIHC 100021021 + 100021001 100021041 41 GGGGAGCACCTCTGTTTTATGGGCAGTGGCAGGGAGGAAGA GGGGAGCACCTCTGTTTTATTGGCAGTGGCAGGGAGGAAGA Direct Loss 0.93655915439841 0 NA NA prediction 0.873118308796821 Functional Loss - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100021021 chr3:100021021 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5958 0 0 1 0 1 TBC1D23 chr3:100021081 5'GT 100021081 Upstream 61bp 5770 chr7 64531307 64531307 1 + G C SARC 64531307 + 64531287 64531327 41 GCTGTGTGGTTCCGGGTGCTGGTGCTGTGGAAGTGGCAATG GCTGTGTGGTTCCGGGTGCTCGTGCTGTGGAAGTGGCAATG Direct Loss 0.936554145601082 0 NA NA prediction 0.873108291202164 Functional Loss - CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64531307 chr7:64531307 . . 0 21 hm7G_associated_SNPs_5960 0 0 1 0 1 CCT6P3 chr7:64531287 3'AG 64531287 Downstream 21bp 5771 chr13 23808783 23808783 1 + G A KIRC 23808783 + 23808763 23808803 41 ACTTGTGTGTAACAAAAGATGGACTGCGCTTGGAAGGGGAA ACTTGTGTGTAACAAAAGATAGACTGCGCTTGGAAGGGGAA Direct Loss 0.936548316428199 0 NA NA prediction 0.873096632856398 Functional Loss - SGCG ENSG00000102683 CDS Human protein_coding chr13:23808783 chr13:23808783 nonsynonymous SNV 0.802 3 21 hm7G_associated_SNPs_5961 0 0 0 0 2 SGCG chr13:23808750 3'AG 23808750 Downstream 34bp 5772 chr13 23808783 23808783 1 + G A KIRC 23808783 + 23808763 23808803 41 ACTTGTGTGTAACAAAAGATGGACTGCGCTTGGAAGGGGAA ACTTGTGTGTAACAAAAGATAGACTGCGCTTGGAAGGGGAA Direct Loss 0.936548316428199 0 NA NA prediction 0.873096632856398 Functional Loss - SGCG ENSG00000102683 CDS Human protein_coding chr13:23808783 chr13:23808783 nonsynonymous SNV 0.802 3 21 hm7G_associated_SNPs_5961 0 0 0 0 2 SGCG chr13:23808851 5'GT 23808851 Upstream 69bp 5773 chr17 72945380 72945380 1 + G C BLCA 72945380 + 72945360 72945400 41 TTGGCATACACCCGGAGTTTGAGAACGGGCTAGAAAAGGAT TTGGCATACACCCGGAGTTTCAGAACGGGCTAGAAAAGGAT Direct Loss 0.936532603740516 0 NA NA prediction 0.873065207481031 Functional Loss - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72945380 chr17:72945380 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5962 0 0 0 0 1 OTOP3 chr17:72945341 3'AG 72945341 Downstream 40bp 5774 chr6 142741054 142741054 1 + G T LUAD 142741054 + 142741034 142741074 41 GCCATGTTCATTGTGGTAATGGTGCAGATCTGTGGGAGGAA GCCATGTTCATTGTGGTAATTGTGCAGATCTGTGGGAGGAA Direct Loss 0.936528165787291 0 NA NA prediction 0.873056331574582 Functional Loss - ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142741054 chr6:142741054 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5963 0 0 1 0 1 ADGRG6 chr6:142740958 3'AG 142740958 Downstream 97bp 5775 chr19 51361826 51361826 1 + G T rs187449592 51361826 + 51361806 51361846 41 CATGCTGTGTGCTGGACGCTGGACAGGGGGCAAAAGCACCT CATGCTGTGTGCTGGACGCTTGACAGGGGGCAAAAGCACCT Direct Loss 0.936524897020995 0 NA NA prediction 0.87304979404199 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361826 chr19:51361826 nonsynonymous SNV 0.000 1 21 hm7G_associated_SNPs_5964 0 0 0 0 1 KLK3 chr19:51361851 5'GT 51361851 Upstream 26bp 5776 chr20 9496947 9496947 1 + G A LUSC 9496947 + 9496927 9496967 41 CCTGAGGCGACTTGGAGGCTGAGCAAAGTGCAGTTTGTCTA CCTGAGGCGACTTGGAGGCTAAGCAAAGTGCAGTTTGTCTA Direct Loss 0.936519150007156 0 NA NA prediction 0.873038300014313 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496947 chr20:9496947 synonymous SNV . 0 21 hm7G_associated_SNPs_5965 0 0 1 0 2 LAMP5 chr20:9496903 3'AG 9496903 Downstream 45bp 5777 chr20 9496947 9496947 1 + G A LUSC 9496947 + 9496927 9496967 41 CCTGAGGCGACTTGGAGGCTGAGCAAAGTGCAGTTTGTCTA CCTGAGGCGACTTGGAGGCTAAGCAAAGTGCAGTTTGTCTA Direct Loss 0.936519150007156 0 NA NA prediction 0.873038300014313 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496947 chr20:9496947 synonymous SNV . 0 21 hm7G_associated_SNPs_5965 0 0 1 0 2 LAMP5 chr20:9497008 5'GT 9497008 Upstream 62bp 5778 chr11 811608 811608 1 + G T SARC 811608 + 811588 811628 41 CTGCTTCAGGTTATCAGTGAGCTGAATGGAAAAAACATTGA CTGCTTCAGGTTATCAGTGATCTGAATGGAAAAAACATTGA Direct Loss 0.936518117225308 0 NA NA prediction 0.873036234450615 Functional Loss - RPLP2 ENSG00000177600 CDS Human protein_coding chr11:811608 chr11:811608 nonsynonymous SNV 0.798 4 21 hm7G_associated_SNPs_5966 0 0 1 0 1 RPLP2 chr11:811597 3'AG 811597 Downstream 12bp 5779 chr3 52281703 52281703 1 + G A rs115706924 52281703 + 52281683 52281723 41 CTCGGTTTTCCCCAGGATGAGGTGATCGGGCGGGAGCTGGA CTCGGTTTTCCCCAGGATGAAGTGATCGGGCGGGAGCTGGA Direct Loss 0.936512411541008 0 NA NA prediction 0.873024823082017 Functional Loss - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281703 chr3:52281703 synonymous SNV . 0 21 hm7G_associated_SNPs_5967 0 0 0 0 1 PPM1M chr3:52281698 3'AG 52281698 Downstream 6bp 5780 chr15 74865224 74865224 1 + G A HNSC 74865224 + 74865204 74865244 41 ATGGTGGTTTGGCCTGGAGTGATGATGCAGATGGAGGCCGG ATGGTGGTTTGGCCTGGAGTAATGATGCAGATGGAGGCCGG Direct Loss 0.936511417861071 0 NA NA prediction 0.873022835722141 Functional Loss - ARID3B ENSG00000179361 CDS Human protein_coding chr15:74865224 chr15:74865224 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5968 0 0 0 0 2 ARID3B chr15:74865203 3'AG 74865203 Downstream 22bp 5781 chr15 74865224 74865224 1 + G A HNSC 74865224 + 74865204 74865244 41 ATGGTGGTTTGGCCTGGAGTGATGATGCAGATGGAGGCCGG ATGGTGGTTTGGCCTGGAGTAATGATGCAGATGGAGGCCGG Direct Loss 0.936511417861071 0 NA NA prediction 0.873022835722141 Functional Loss - ARID3B ENSG00000179361 CDS Human protein_coding chr15:74865224 chr15:74865224 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5968 0 0 0 0 2 ARID3B chr15:74865274 5'GT 74865274 Upstream 51bp 5782 chr8 21938932 21938932 1 + G A STAD 21938932 + 21938912 21938952 41 GAGTTTGGCAAGCTGGCTCTGTGGAAGCGGAATGAGCTCAA GAGTTTGGCAAGCTGGCTCTATGGAAGCGGAATGAGCTCAA Direct Loss 0.936502039481099 0 NA NA prediction 0.873004078962198 Functional Loss - DMTN ENSG00000158856 CDS Human protein_coding chr8:21938932 chr8:21938932 synonymous SNV . 0 21 hm7G_associated_SNPs_5970 0 0 1 0 1 DMTN chr8:21938861 3'AG 21938861 Downstream 72bp 5783 chr11 63586389 63586389 1 + G C rs149061077 63586389 + 63586369 63586409 41 CAGCTCTTCTCCCACACCCAGCTCAGGGGCCCAGACAGCAA CAGCTCTTCTCCCACACCCACCTCAGGGGCCCAGACAGCAA Direct Loss 0.936496987278847 0 NA NA prediction 0.872993974557694 Functional Loss - C11orf84 ENSG00000168005 CDS Human protein_coding chr11:63586389 chr11:63586389 nonsynonymous SNV 0.938 1 21 hm7G_associated_SNPs_5972 0 0 1 0 1 C11orf84 chr11:63586474 5'GT 63586474 Upstream 86bp 5784 chr4 88732577 88732577 1 + G A SKCM 88732577 + 88732557 88732597 41 ATGAAGAAGAAGAGGAGGAAGAGGAAGGAAATGAAAACGAA ATGAAGAAGAAGAGGAGGAAAAGGAAGGAAATGAAAACGAA Direct Loss 0.936479130749038 0 NA NA prediction 0.872958261498076 Functional Loss - IBSP ENSG00000029559 CDS Human protein_coding chr4:88732577 chr4:88732577 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_5974 0 0 0 0 1 IBSP chr4:88732514 3'AG 88732514 Downstream 64bp 5785 chr4 41262687 41262687 1 + G C BLCA 41262687 + 41262667 41262707 41 GAGAACTTCAGGAAAAAGCAGATTGAAGAGCTGAAGGGACA GAGAACTTCAGGAAAAAGCACATTGAAGAGCTGAAGGGACA Direct Loss 0.93646759524236 0 NA NA prediction 0.87293519048472 Functional Loss - UCHL1 ENSG00000154277 CDS Human protein_coding chr4:41262687 chr4:41262687 nonsynonymous SNV 0.954 4 21 hm7G_associated_SNPs_5976 0 0 1 0 1 UCHL1 chr4:41262664 3'AG 41262664 Downstream 24bp 5786 chr9 107515279 107515279 1 + G A UCEC 107515279 + 107515259 107515299 41 TTCCAAATTTGGCTCTCATTGATAAACAAGAGAGTGAGATT TTCCAAATTTGGCTCTCATTAATAAACAAGAGAGTGAGATT Direct Loss 0.936464744726421 0 NA NA prediction 0.872929489452841 Functional Loss - NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107515279 chr9:107515279 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5977 0 0 1 0 2 NIPSNAP3A chr9:107515187 3'AG 107515187 Downstream 93bp 5787 chr9 107515279 107515279 1 + G A UCEC 107515279 + 107515259 107515299 41 TTCCAAATTTGGCTCTCATTGATAAACAAGAGAGTGAGATT TTCCAAATTTGGCTCTCATTAATAAACAAGAGAGTGAGATT Direct Loss 0.936464744726421 0 NA NA prediction 0.872929489452841 Functional Loss - NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107515279 chr9:107515279 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_5977 0 0 1 0 2 NIPSNAP3A chr9:107515345 5'GT 107515345 Upstream 67bp 5788 chr1 26138259 26138259 1 + G T SARC 26138259 + 26138239 26138279 41 AGCATGATCGACAGCCACCTGCCTTCAGGGGAGCCCCTGCA AGCATGATCGACAGCCACCTTCCTTCAGGGGAGCCCCTGCA Direct Loss 0.936463443290366 0 NA NA prediction 0.872926886580732 Functional Loss - SELENON ENSG00000162430 CDS Human protein_coding chr1:26138259 chr1:26138259 synonymous SNV . 0 21 hm7G_associated_SNPs_5978 0 0 1 0 1 SELENON chr1:26138182 3'AG 26138182 Downstream 78bp 5789 chr14 58737152 58737152 1 + G T UCEC 58737152 + 58737132 58737172 41 CTAGAATTTACATAGTACATGACGAAGTTAAGGATAAAGCT CTAGAATTTACATAGTACATTACGAAGTTAAGGATAAAGCT Direct Loss 0.936462083126214 0 NA NA prediction 0.872924166252429 Functional Loss - PSMA3 ENSG00000100567 CDS Human protein_coding chr14:58737152 chr14:58737152 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5979 0 0 1 0 2 PSMA3 chr14:58737136 3'AG 58737136 Downstream 17bp 5790 chr14 58737152 58737152 1 + G T UCEC 58737152 + 58737132 58737172 41 CTAGAATTTACATAGTACATGACGAAGTTAAGGATAAAGCT CTAGAATTTACATAGTACATTACGAAGTTAAGGATAAAGCT Direct Loss 0.936462083126214 0 NA NA prediction 0.872924166252429 Functional Loss - PSMA3 ENSG00000100567 CDS Human protein_coding chr14:58737152 chr14:58737152 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_5979 0 0 1 0 2 PSMA3 chr14:58737203 5'GT 58737203 Upstream 52bp 5791 chr11 118886077 118886077 1 + G T SARC 118886077 + 118886057 118886097 41 TGGGGCCAACTTTGATCACAGCTCCAGGACCAGTGCAGGCT TGGGGCCAACTTTGATCACATCTCCAGGACCAGTGCAGGCT Direct Loss 0.936461088674763 0 NA NA prediction 0.872922177349525 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886077 chr11:118886077 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_5980 0 0 1 2 3 CCDC84 chr11:118885998 3'AG 118885998 Downstream 80bp 5792 chr11 118886077 118886077 1 + G T SARC 118886077 + 118886057 118886097 41 TGGGGCCAACTTTGATCACAGCTCCAGGACCAGTGCAGGCT TGGGGCCAACTTTGATCACATCTCCAGGACCAGTGCAGGCT Direct Loss 0.936461088674763 0 NA NA prediction 0.872922177349525 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886077 chr11:118886077 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_5980 0 0 1 2 3 CCDC84 chr11:118886017 3'AG 118886017 Downstream 61bp 5793 chr11 118886077 118886077 1 + G T SARC 118886077 + 118886057 118886097 41 TGGGGCCAACTTTGATCACAGCTCCAGGACCAGTGCAGGCT TGGGGCCAACTTTGATCACATCTCCAGGACCAGTGCAGGCT Direct Loss 0.936461088674763 0 NA NA prediction 0.872922177349525 Functional Loss - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118886077 chr11:118886077 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_5980 0 0 1 2 3 CCDC84 chr11:118886149 5'GT 118886149 Upstream 73bp 5794 chr13 98652797 98652797 1 + G A LGG 98652797 + 98652777 98652817 41 CTGTTTATGTGTTTAGCAATGCAGTTGCAGGCGAGAGTGCT CTGTTTATGTGTTTAGCAATACAGTTGCAGGCGAGAGTGCT Direct Loss 0.936458971556538 0 NA NA prediction 0.872917943113075 Functional Loss - IPO5 ENSG00000065150 CDS Human protein_coding chr13:98652797 chr13:98652797 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_5981 0 0 1 0 1 IPO5 chr13:98652793 3'AG 98652793 Downstream 5bp 5795 chr1 116943622 116943622 1 + G T STAD 116943622 + 116943602 116943642 41 GTGGAAGACAGCTACGGGCAGCAGTGGGTGAGTGGGCACCT GTGGAAGACAGCTACGGGCATCAGTGGGTGAGTGGGCACCT Direct Loss 0.93645739457526 0 NA NA prediction 0.87291478915052 Functional Loss - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116943622 chr1:116943622 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5982 0 0 1 0 1 ATP1A1 chr1:116943628 5'GT 116943628 Upstream 7bp 5796 chr4 156830048 156830048 1 + G T UCEC 156830048 + 156830028 156830068 41 TTAACCTTCAGGTCAGAGATGAAAGGAACATGCTTAAGGTT TTAACCTTCAGGTCAGAGATTAAAGGAACATGCTTAAGGTT Direct Loss 0.9364486788408 0 NA NA prediction 0.872897357681601 Functional Loss - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156830048 chr4:156830048 stopgain 1.000 1 21 hm7G_associated_SNPs_5984 0 0 0 0 1 TDO2 chr4:156830039 3'AG 156830039 Downstream 10bp 5797 chr2 55772048 55772048 1 + G T STAD 55772048 + 55772028 55772068 41 TTCTTTTTTTTTCAGGAAATGACAGAGAAACCAGAAATGAC TTCTTTTTTTTTCAGGAAATTACAGAGAAACCAGAAATGAC Direct Loss 0.936438458544311 0 NA NA prediction 0.872876917088622 Functional Loss - CFAP36 ENSG00000163001 CDS Human protein_coding chr2:55772048 chr2:55772048 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_5985 0 0 1 0 1 CFAP36 chr2:55772043 3'AG 55772043 Downstream 6bp 5798 chr11 720175 720175 1 + G C READ 720175 + 720155 720195 41 ATCTGGACCCAGGAGATGCTGCTGCAGGTGAACGACCAGTC ATCTGGACCCAGGAGATGCTCCTGCAGGTGAACGACCAGTC Direct Loss 0.936431642498963 0 NA NA prediction 0.872863284997925 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:720175 chr11:720175 synonymous SNV . 0 21 hm7G_associated_SNPs_5986 0 0 1 0 1 EPS8L2 chr11:720223 5'GT 720223 Upstream 49bp 5799 chr17 41151959 41151959 1 + G A LUSC 41151959 + 41151939 41151979 41 TACTCATTTAGAACATTGATGATGGCACCTCAGATCGCCCC TACTCATTTAGAACATTGATAATGGCACCTCAGATCGCCCC Direct Loss 0.936425871099726 0 NA NA prediction 0.872851742199451 Functional Loss - RPL27 ENSG00000131469 CDS Human protein_coding chr17:41151959 chr17:41151959 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_5988 0 0 1 0 1 RPL27 chr17:41151950 3'AG 41151950 Downstream 10bp 5800 chr4 70156437 70156437 1 + G T UCEC 70156437 + 70156417 70156457 41 CCTGATAACATTGCTCACATGAAGGCCAAGGGAGCAGCTGT CCTGATAACATTGCTCACATTAAGGCCAAGGGAGCAGCTGT Direct Loss 0.936422475784918 0 NA NA prediction 0.872844951569836 Functional Loss - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70156437 chr4:70156437 nonsynonymous SNV 0.001 1 21 hm7G_associated_SNPs_5989 0 0 0 0 1 UGT2B28 chr4:70156529 5'GT 70156529 Upstream 93bp 5801 chr2 46707843 46707843 1 + G A UCEC 46707843 + 46707823 46707863 41 GTGGTGATGGAGCAGCTGCAGCGGGAGCGGCAGCACGAGGT GTGGTGATGGAGCAGCTGCAACGGGAGCGGCAGCACGAGGT Direct Loss 0.936418542559005 0 NA NA prediction 0.872837085118011 Functional Loss - TMEM247 ENSG00000187600 CDS Human protein_coding chr2:46707843 chr2:46707843 synonymous SNV . 0 21 hm7G_associated_SNPs_5990 0 0 0 0 1 TMEM247 chr2:46707903 5'GT 46707903 Upstream 61bp 5802 chr2 190660510 190660510 1 + G T UCEC 190660510 + 190660490 190660530 41 TATAGGAGAACTATGGATTTGATAAAATTGAGGTGCGAGAT TATAGGAGAACTATGGATTTTATAAAATTGAGGTGCGAGAT Direct Loss 0.936415287444587 0 NA NA prediction 0.872830574889173 Functional Loss - PMS1 ENSG00000064933 CDS Human protein_coding chr2:190660510 chr2:190660510 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_5991 0 0 0 1 1 PMS1 chr2:190660495 3'AG 190660495 Downstream 16bp 5803 chr17 48823134 48823134 1 + G A rs138812245 48823134 + 48823114 48823154 41 CGTGATGAGCGTCTAAAAAAGGAGAAGCAAGAAAGAGAAGA CGTGATGAGCGTCTAAAAAAAGAGAAGCAAGAAAGAGAAGA Direct Loss 0.936402311061389 0 NA NA prediction 0.872804622122778 Functional Loss - LUC7L3 ENSG00000108848 CDS Human protein_coding chr17:48823134 chr17:48823134 synonymous SNV . 0 21 hm7G_associated_SNPs_5992 0 0 1 0 1 LUC7L3 chr17:48823081 3'AG 48823081 Downstream 54bp 5804 chr1 211542869 211542869 1 + G C LUSC 211542869 + 211542849 211542889 41 CAGAAACTATAAAGAAACTTGAAAAGGAGTTCAAGCAGTTT CAGAAACTATAAAGAAACTTCAAAAGGAGTTCAAGCAGTTT Direct Loss 0.936396555983908 0 NA NA prediction 0.872793111967815 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211542869 chr1:211542869 nonsynonymous SNV 0.887 1 21 hm7G_associated_SNPs_5993 0 0 1 0 2 TRAF5 chr1:211542794 3'AG 211542794 Downstream 76bp 5805 chr1 211542869 211542869 1 + G C LUSC 211542869 + 211542849 211542889 41 CAGAAACTATAAAGAAACTTGAAAAGGAGTTCAAGCAGTTT CAGAAACTATAAAGAAACTTCAAAAGGAGTTCAAGCAGTTT Direct Loss 0.936396555983908 0 NA NA prediction 0.872793111967815 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211542869 chr1:211542869 nonsynonymous SNV 0.887 1 21 hm7G_associated_SNPs_5993 0 0 1 0 2 TRAF5 chr1:211542934 5'GT 211542934 Upstream 66bp 5806 chr3 46541939 46541939 1 + G A SKCM 46541939 + 46541919 46541959 41 GAGGAGAAGTCCAGGGGCCAGGTGAAGATGAGGGTGTTTAC GAGGAGAAGTCCAGGGGCCAAGTGAAGATGAGGGTGTTTAC Direct Loss 0.936392259914343 0 NA NA prediction 0.872784519828686 Functional Loss - RTP3 ENSG00000163825 CDS Human protein_coding chr3:46541939 chr3:46541939 synonymous SNV . 0 21 hm7G_associated_SNPs_5994 0 0 0 0 1 RTP3 chr3:46541846 3'AG 46541846 Downstream 94bp 5807 chr17 21215516 21215516 1 + G T UCEC 21215516 + 21215496 21215536 41 ACCCCGTTCCAGCAGCTGAAGCAGGTGGTGGAGGAGCCGTC ACCCCGTTCCAGCAGCTGAATCAGGTGGTGGAGGAGCCGTC Direct Loss 0.936385324398537 0 NA NA prediction 0.872770648797073 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215516 chr17:21215516 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5995 0 0 0 0 2 MAP2K3 chr17:21215454 3'AG 21215454 Downstream 63bp 5808 chr17 21215516 21215516 1 + G T UCEC 21215516 + 21215496 21215536 41 ACCCCGTTCCAGCAGCTGAAGCAGGTGGTGGAGGAGCCGTC ACCCCGTTCCAGCAGCTGAATCAGGTGGTGGAGGAGCCGTC Direct Loss 0.936385324398537 0 NA NA prediction 0.872770648797073 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215516 chr17:21215516 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_5995 0 0 0 0 2 MAP2K3 chr17:21215593 5'GT 21215593 Upstream 78bp 5809 chrX 153608325 153608325 1 + G T LUAD 153608325 + 153608305 153608345 41 TGAATTCGACTAGAGGGGATGCAGATATGTATGATCTTCCC TGAATTCGACTAGAGGGGATTCAGATATGTATGATCTTCCC Direct Loss 0.936381699437218 0 NA NA prediction 0.872763398874436 Functional Loss - EMD ENSG00000102119 CDS Human protein_coding chrX:153608325 chrX:153608325 nonsynonymous SNV 0.056 0 21 hm7G_associated_SNPs_5996 0 0 1 0 1 EMD chrX:153608302 3'AG 153608302 Downstream 24bp 5810 chr14 76012894 76012894 1 + G A LUAD 76012894 + 76012874 76012914 41 AAGTACTTCACGTCGGTGCTGAACAGCCACGAGCCCCTGTG AAGTACTTCACGTCGGTGCTAAACAGCCACGAGCCCCTGTG Direct Loss 0.936381388690182 0 NA NA prediction 0.872762777380363 Functional Loss - BATF ENSG00000156127 CDS Human protein_coding chr14:76012894 chr14:76012894 synonymous SNV . 0 21 hm7G_associated_SNPs_5997 0 0 0 0 1 BATF chr14:76012805 3'AG 76012805 Downstream 90bp 5811 chr6 117047719 117047719 1 + G A PRAD 117047719 + 117047699 117047739 41 TCTTCAGAAAGCAGAGTTTCGTACCAGAAAAGAAGCAGCTT TCTTCAGAAAGCAGAGTTTCATACCAGAAAAGAAGCAGCTT Direct Loss 0.936379977211975 0 NA NA prediction 0.872759954423949 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117047719 chr6:117047719 nonsynonymous SNV 0.983 3 21 hm7G_associated_SNPs_5998 0 0 0 0 2 KPNA5 chr6:117047658 3'AG 117047658 Downstream 62bp 5812 chr6 117047719 117047719 1 + G A PRAD 117047719 + 117047699 117047739 41 TCTTCAGAAAGCAGAGTTTCGTACCAGAAAAGAAGCAGCTT TCTTCAGAAAGCAGAGTTTCATACCAGAAAAGAAGCAGCTT Direct Loss 0.936379977211975 0 NA NA prediction 0.872759954423949 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117047719 chr6:117047719 nonsynonymous SNV 0.983 3 21 hm7G_associated_SNPs_5998 0 0 0 0 2 KPNA5 chr6:117047785 5'GT 117047785 Upstream 67bp 5813 chr22 38610501 38610501 1 + G C LUSC 38610501 + 38610481 38610521 41 GGGCTGTCGGTGCGCGAGCTGAACCGGCATCTGCGCGGGCT GGGCTGTCGGTGCGCGAGCTCAACCGGCATCTGCGCGGGCT Direct Loss 0.936378033995088 0 NA NA prediction 0.872756067990176 Functional Loss - MAFF ENSG00000185022 CDS Human protein_coding chr22:38610501 chr22:38610501 synonymous SNV . 0 21 hm7G_associated_SNPs_5999 0 0 0 0 1 MAFF chr22:38610427 3'AG 38610427 Downstream 75bp 5814 chr3 119236114 119236114 1 + G T UCEC 119236114 + 119236094 119236134 41 TGGTGAGACTGTTCAGGAAAGAAAACAGAAGGATCGAAAGG TGGTGAGACTGTTCAGGAAATAAAACAGAAGGATCGAAAGG Direct Loss 0.93636664516849 0 NA NA prediction 0.87273329033698 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119236114 chr3:119236114 nonsynonymous SNV 0.895 2 21 hm7G_associated_SNPs_6001 0 0 1 0 2 TIMMDC1 chr3:119236052 3'AG 119236052 Downstream 63bp 5815 chr3 119236114 119236114 1 + G T UCEC 119236114 + 119236094 119236134 41 TGGTGAGACTGTTCAGGAAAGAAAACAGAAGGATCGAAAGG TGGTGAGACTGTTCAGGAAATAAAACAGAAGGATCGAAAGG Direct Loss 0.93636664516849 0 NA NA prediction 0.87273329033698 Functional Loss - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119236114 chr3:119236114 nonsynonymous SNV 0.895 2 21 hm7G_associated_SNPs_6001 0 0 1 0 2 TIMMDC1 chr3:119236162 5'GT 119236162 Upstream 49bp 5816 chr13 53608566 53608566 1 + G A SKCM 53608566 + 53608546 53608586 41 CCAGACACCACCTTTCCCGTGGACAGAGTGGAACGCTTGGA CCAGACACCACCTTTCCCGTAGACAGAGTGGAACGCTTGGA Direct Loss 0.936362100500686 0 NA NA prediction 0.872724201001372 Functional Loss - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53608566 chr13:53608566 synonymous SNV . 0 21 hm7G_associated_SNPs_6002 0 0 0 0 2 OLFM4 chr13:53608483 3'AG 53608483 Downstream 84bp 5817 chr13 53608566 53608566 1 + G A SKCM 53608566 + 53608546 53608586 41 CCAGACACCACCTTTCCCGTGGACAGAGTGGAACGCTTGGA CCAGACACCACCTTTCCCGTAGACAGAGTGGAACGCTTGGA Direct Loss 0.936362100500686 0 NA NA prediction 0.872724201001372 Functional Loss - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53608566 chr13:53608566 synonymous SNV . 0 21 hm7G_associated_SNPs_6002 0 0 0 0 2 OLFM4 chr13:53608635 5'GT 53608635 Upstream 70bp 5818 chr12 108603991 108603991 1 + G C LUAD 108603991 + 108603971 108604011 41 AGCGAGGCAGAGTGCGACATGGAGTGCAAGGGCGAGCGAGG AGCGAGGCAGAGTGCGACATCGAGTGCAAGGGCGAGCGAGG Direct Loss 0.936353108424175 0 NA NA prediction 0.87270621684835 Functional Loss - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108603991 chr12:108603991 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_6003 0 0 0 0 2 WSCD2 chr12:108603898 3'AG 108603898 Downstream 94bp 5819 chr12 108603991 108603991 1 + G C LUAD 108603991 + 108603971 108604011 41 AGCGAGGCAGAGTGCGACATGGAGTGCAAGGGCGAGCGAGG AGCGAGGCAGAGTGCGACATCGAGTGCAAGGGCGAGCGAGG Direct Loss 0.936353108424175 0 NA NA prediction 0.87270621684835 Functional Loss - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108603991 chr12:108603991 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_6003 0 0 0 0 2 WSCD2 chr12:108604082 5'GT 108604082 Upstream 92bp 5820 chr2 67637053 67637053 1 + G C BRCA 67637053 + 67637033 67637073 41 GAATTTTTAGAGGAAGAAGAGAAAAATAGAAAGTGTTCTCC GAATTTTTAGAGGAAGAAGACAAAAATAGAAAGTGTTCTCC Direct Loss 0.936346523266429 0 NA NA prediction 0.872693046532857 Functional Loss - ETAA1 ENSG00000143971 CDS Human protein_coding chr2:67637053 chr2:67637053 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6005 0 0 1 0 1 ETAA1 chr2:67637043 3'AG 67637043 Downstream 11bp 5821 chrX 15827342 15827342 1 + G A SKCM 15827342 + 15827322 15827362 41 GTTGGAAAATGGTACCACATGGCAAAACCCAGAACCACCCG GTTGGAAAATGGTACCACATAGCAAAACCCAGAACCACCCG Direct Loss 0.936327215977728 0 NA NA prediction 0.872654431955455 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15827342 chrX:15827342 stopgain 0.999 1 21 hm7G_associated_SNPs_6007 0 0 0 0 2 ZRSR2 chrX:15827323 3'AG 15827323 Downstream 20bp 5822 chrX 15827342 15827342 1 + G A SKCM 15827342 + 15827322 15827362 41 GTTGGAAAATGGTACCACATGGCAAAACCCAGAACCACCCG GTTGGAAAATGGTACCACATAGCAAAACCCAGAACCACCCG Direct Loss 0.936327215977728 0 NA NA prediction 0.872654431955455 Functional Loss - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15827342 chrX:15827342 stopgain 0.999 1 21 hm7G_associated_SNPs_6007 0 0 0 0 2 ZRSR2 chrX:15827441 5'GT 15827441 Upstream 100bp 5823 chr13 41943311 41943311 1 + G A UCEC 41943311 + 41943291 41943331 41 AAACTAGAAGAAGAAAGAAAGCATGCAGAAAGAGAACGTCA AAACTAGAAGAAGAAAGAAAACATGCAGAAAGAGAACGTCA Direct Loss 0.936326044770351 0 NA NA prediction 0.872652089540702 Functional Loss - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41943311 chr13:41943311 synonymous SNV . 0 21 hm7G_associated_SNPs_6008 0 0 1 1 1 NAA16 chr13:41943226 3'AG 41943226 Downstream 86bp 5824 chr14 52466502 52466502 1 + G A rs76200085 52466502 + 52466482 52466522 41 CAGCGTCATGATGATTACCTGGTAATGCTTAAGGTCAGCTT CAGCGTCATGATGATTACCTAGTAATGCTTAAGGTCAGCTT Direct Loss 0.936321120246973 0 NA NA prediction 0.872642240493947 Functional Loss - C14orf166 ENSG00000087302 CDS Human protein_coding chr14:52466502 chr14:52466502 synonymous SNV . 0 21 hm7G_associated_SNPs_6009 0 0 1 0 2 C14orf166 chr14:52466426 3'AG 52466426 Downstream 77bp 5825 chr14 52466502 52466502 1 + G A rs76200085 52466502 + 52466482 52466522 41 CAGCGTCATGATGATTACCTGGTAATGCTTAAGGTCAGCTT CAGCGTCATGATGATTACCTAGTAATGCTTAAGGTCAGCTT Direct Loss 0.936321120246973 0 NA NA prediction 0.872642240493947 Functional Loss - C14orf166 ENSG00000087302 CDS Human protein_coding chr14:52466502 chr14:52466502 synonymous SNV . 0 21 hm7G_associated_SNPs_6009 0 0 1 0 2 C14orf166 chr14:52466514 5'GT 52466514 Upstream 13bp 5826 chr19 57744006 57744006 1 + G T UCEC 57744006 + 57743986 57744026 41 AGGGGTGAGCTCTACAAGGAGCTGCAGAAAAGCGAGAAATT AGGGGTGAGCTCTACAAGGATCTGCAGAAAAGCGAGAAATT Direct Loss 0.936318362929365 0 NA NA prediction 0.872636725858729 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57744006 chr19:57744006 nonsynonymous SNV 0.970 0 21 hm7G_associated_SNPs_6011 0 0 1 0 2 AURKC chr19:57743910 3'AG 57743910 Downstream 97bp 5827 chr19 57744006 57744006 1 + G T UCEC 57744006 + 57743986 57744026 41 AGGGGTGAGCTCTACAAGGAGCTGCAGAAAAGCGAGAAATT AGGGGTGAGCTCTACAAGGATCTGCAGAAAAGCGAGAAATT Direct Loss 0.936318362929365 0 NA NA prediction 0.872636725858729 Functional Loss - AURKC ENSG00000105146 CDS Human protein_coding chr19:57744006 chr19:57744006 nonsynonymous SNV 0.970 0 21 hm7G_associated_SNPs_6011 0 0 1 0 2 AURKC chr19:57744048 5'GT 57744048 Upstream 43bp 5828 chr7 106515219 106515219 1 + G A SKCM 106515219 + 106515199 106515239 41 AAAGCTTTAGAGTTCCATATGATCCTGGACTGAAAGCAGGA AAAGCTTTAGAGTTCCATATAATCCTGGACTGAAAGCAGGA Direct Loss 0.936312888649846 0 NA NA prediction 0.872625777299691 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106515219 chr7:106515219 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6012 0 0 1 0 2 PIK3CG chr7:106515145 3'AG 106515145 Downstream 75bp 5829 chr7 106515219 106515219 1 + G A SKCM 106515219 + 106515199 106515239 41 AAAGCTTTAGAGTTCCATATGATCCTGGACTGAAAGCAGGA AAAGCTTTAGAGTTCCATATAATCCTGGACTGAAAGCAGGA Direct Loss 0.936312888649846 0 NA NA prediction 0.872625777299691 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106515219 chr7:106515219 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6012 0 0 1 0 2 PIK3CG chr7:106515248 5'GT 106515248 Upstream 30bp 5830 chr16 5057401 5057401 1 + G T UCEC 5057401 + 5057381 5057421 41 CCAAGTCCCTCTACATGACAGAAGAGGAGCAGGAGCACACG CCAAGTCCCTCTACATGACATAAGAGGAGCAGGAGCACACG Direct Loss 0.936292195904802 0 NA NA prediction 0.872584391809604 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5057401 chr16:5057401 stopgain 0.942 0 21 hm7G_associated_SNPs_6014 0 0 0 0 1 SEC14L5 chr16:5057487 5'GT 5057487 Upstream 87bp 5831 chr14 58827655 58827655 1 + G T LUAD 58827655 + 58827635 58827675 41 AAAAGGACGAAAAGAGAGATGAGGAGAGGCAGAAGTCAAAA AAAAGGACGAAAAGAGAGATTAGGAGAGGCAGAAGTCAAAA Direct Loss 0.936274220415058 0 NA NA prediction 0.872548440830117 Functional Loss - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58827655 chr14:58827655 stopgain 1.000 1 21 hm7G_associated_SNPs_6017 0 0 1 0 1 ARID4A chr14:58827619 3'AG 58827619 Downstream 37bp 5832 chr7 138824648 138824648 1 + G T STAD 138824648 + 138824628 138824668 41 TATTTCAGGAATACGAAAATGCTACAAAAGAGGAAAATTGT TATTTCAGGAATACGAAAATTCTACAAAAGAGGAAAATTGT Direct Loss 0.936269562443191 0 NA NA prediction 0.872539124886382 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138824648 chr7:138824648 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_6018 0 0 0 0 1 TTC26 chr7:138824636 3'AG 138824636 Downstream 13bp 5833 chr19 42365245 42365245 1 + G T SARC 42365245 + 42365225 42365265 41 TGGCCAAGCACAAAGAGCTTGCTCCCTACGATGAGAACTGG TGGCCAAGCACAAAGAGCTTTCTCCCTACGATGAGAACTGG Direct Loss 0.936267284827708 0 NA NA prediction 0.872534569655416 Functional Loss - RPS19 ENSG00000105372 CDS Human protein_coding chr19:42365245 chr19:42365245 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6019 0 0 1 0 2 RPS19 chr19:42365181 3'AG 42365181 Downstream 65bp 5834 chr19 42365245 42365245 1 + G T SARC 42365245 + 42365225 42365265 41 TGGCCAAGCACAAAGAGCTTGCTCCCTACGATGAGAACTGG TGGCCAAGCACAAAGAGCTTTCTCCCTACGATGAGAACTGG Direct Loss 0.936267284827708 0 NA NA prediction 0.872534569655416 Functional Loss - RPS19 ENSG00000105372 CDS Human protein_coding chr19:42365245 chr19:42365245 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6019 0 0 1 0 2 RPS19 chr19:42365281 5'GT 42365281 Upstream 37bp 5835 chr22 27024363 27024363 1 + G A SKCM 27024363 + 27024343 27024383 41 CCATGGGATGGGAAGGCAATGAAGTAGGGTCCTTCCACGTC CCATGGGATGGGAAGGCAATAAAGTAGGGTCCTTCCACGTC Direct Loss 0.936260932911247 0 NA NA prediction 0.872521865822494 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27024363 chr22:27024363 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6020 0 0 0 0 1 CRYBA4 chr22:27024394 5'GT 27024394 Upstream 32bp 5836 chr14 35522505 35522505 1 + G T UCEC 35522505 + 35522485 35522525 41 TGAGTAACGAAAGAGGCTTTGAAAATGTAGAACTGGGAGTC TGAGTAACGAAAGAGGCTTTTAAAATGTAGAACTGGGAGTC Direct Loss 0.936247080430738 0 NA NA prediction 0.872494160861476 Functional Loss - FAM177A1 ENSG00000151327 CDS Human protein_coding chr14:35522505 chr14:35522505 stopgain 1.000 1 21 hm7G_associated_SNPs_6021 0 0 1 0 1 FAM177A1 chr14:35522484 3'AG 35522484 Downstream 22bp 5837 chr12 7175787 7175787 1 + G A SKCM 7175787 + 7175767 7175807 41 TCACTGTGCTGGTAACGGGAGCTGGGTGAATGAGGTGCTGG TCACTGTGCTGGTAACGGGAACTGGGTGAATGAGGTGCTGG Direct Loss 0.936242987959953 0 NA NA prediction 0.872485975919906 Functional Loss - C1S ENSG00000182326 CDS Human protein_coding chr12:7175787 chr12:7175787 nonsynonymous SNV 0.924 0 21 hm7G_associated_SNPs_6022 0 0 1 0 2 C1S chr12:7175760 3'AG 7175760 Downstream 28bp 5838 chr12 7175787 7175787 1 + G A SKCM 7175787 + 7175767 7175807 41 TCACTGTGCTGGTAACGGGAGCTGGGTGAATGAGGTGCTGG TCACTGTGCTGGTAACGGGAACTGGGTGAATGAGGTGCTGG Direct Loss 0.936242987959953 0 NA NA prediction 0.872485975919906 Functional Loss - C1S ENSG00000182326 CDS Human protein_coding chr12:7175787 chr12:7175787 nonsynonymous SNV 0.924 0 21 hm7G_associated_SNPs_6022 0 0 1 0 2 C1S chr12:7175834 5'GT 7175834 Upstream 48bp 5839 chr1 150039956 150039956 1 + G C ESCA 150039956 + 150039936 150039976 41 AAGCAGTACATTTCCAAAATGATAGAGGACAGCGGGCCTGG AAGCAGTACATTTCCAAAATCATAGAGGACAGCGGGCCTGG Direct Loss 0.93624216089623 0 NA NA prediction 0.872484321792461 Functional Loss - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150039956 chr1:150039956 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6023 0 0 1 0 1 VPS45 chr1:150040007 5'GT 150040007 Upstream 52bp 5840 chr1 45278683 45278683 1 + G A LIHC 45278683 + 45278663 45278703 41 CGCAGGTGGCCGTAACCTTTGGCCTGGGGCAGCTGCAGGAG CGCAGGTGGCCGTAACCTTTAGCCTGGGGCAGCTGCAGGAG Direct Loss 0.936241867830821 0 NA NA prediction 0.872483735661642 Functional Loss - BTBD19 ENSG00000222009 CDS Human protein_coding chr1:45278683 chr1:45278683 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_6024 0 0 1 0 2 BTBD19 chr1:45278668 3'AG 45278668 Downstream 16bp 5841 chr1 45278683 45278683 1 + G A LIHC 45278683 + 45278663 45278703 41 CGCAGGTGGCCGTAACCTTTGGCCTGGGGCAGCTGCAGGAG CGCAGGTGGCCGTAACCTTTAGCCTGGGGCAGCTGCAGGAG Direct Loss 0.936241867830821 0 NA NA prediction 0.872483735661642 Functional Loss - BTBD19 ENSG00000222009 CDS Human protein_coding chr1:45278683 chr1:45278683 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_6024 0 0 1 0 2 BTBD19 chr1:45278736 5'GT 45278736 Upstream 54bp 5842 chr2 172844198 172844198 1 + G A LIHC 172844198 + 172844178 172844218 41 TATGAAATTCTTCGACTACTGGTAACTGACATGAGTGATGC TATGAAATTCTTCGACTACTAGTAACTGACATGAGTGATGC Direct Loss 0.936236231827464 0 NA NA prediction 0.872472463654928 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172844198 chr2:172844198 synonymous SNV . 0 21 hm7G_associated_SNPs_6025 0 0 1 0 2 HAT1 chr2:172844160 3'AG 172844160 Downstream 39bp 5843 chr2 172844198 172844198 1 + G A LIHC 172844198 + 172844178 172844218 41 TATGAAATTCTTCGACTACTGGTAACTGACATGAGTGATGC TATGAAATTCTTCGACTACTAGTAACTGACATGAGTGATGC Direct Loss 0.936236231827464 0 NA NA prediction 0.872472463654928 Functional Loss - HAT1 ENSG00000128708 CDS Human protein_coding chr2:172844198 chr2:172844198 synonymous SNV . 0 21 hm7G_associated_SNPs_6025 0 0 1 0 2 HAT1 chr2:172844276 5'GT 172844276 Upstream 79bp 5844 chr1 28081820 28081820 1 + G T UCEC 28081820 + 28081800 28081840 41 TTGCATCAAAAGGATCAAATGATTTTAGAGAAAGAGAAGAA TTGCATCAAAAGGATCAAATTATTTTAGAGAAAGAGAAGAA Direct Loss 0.936218218060125 0 NA NA prediction 0.87243643612025 Functional Loss - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28081820 chr1:28081820 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_6029 0 0 1 0 1 FAM76A chr1:28081841 5'GT 28081841 Upstream 22bp 5845 chr12 109288140 109288140 1 + G T UCEC 109288140 + 109288120 109288160 41 CCAGGCCGGGGGCAGATCATGAAGGTGAGTGTGAGGGTGAG CCAGGCCGGGGGCAGATCATTAAGGTGAGTGTGAGGGTGAG Direct Loss 0.936215048035389 0 NA NA prediction 0.872430096070778 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109288140 chr12:109288140 nonsynonymous SNV 0.953 0 21 hm7G_associated_SNPs_6030 0 0 0 0 1 DAO chr12:109288143 5'GT 109288143 Upstream 4bp 5846 chr4 88902681 88902681 1 + G A GBM 88902681 + 88902661 88902701 41 ACATGGATGATATGGATGATGAAGATGATGATGACCATGTG ACATGGATGATATGGATGATAAAGATGATGATGACCATGTG Direct Loss 0.936206349300082 0 NA NA prediction 0.872412698600164 Functional Loss - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88902681 chr4:88902681 nonsynonymous SNV 0.262 1 21 hm7G_associated_SNPs_6031 0 0 1 0 1 SPP1 chr4:88902627 3'AG 88902627 Downstream 55bp 5847 chr2 232577534 232577534 1 + G T UCEC 232577534 + 232577514 232577554 41 GATGACGATGTCGATACCAAGAAGCAGAAGACCGACGAGGA GATGACGATGTCGATACCAATAAGCAGAAGACCGACGAGGA Direct Loss 0.936204245056296 0 NA NA prediction 0.872408490112593 Functional Loss - PTMA ENSG00000187514 CDS Human protein_coding chr2:232577534 chr2:232577534 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6032 0 0 1 0 1 PTMA chr2:232577514 3'AG 232577514 Downstream 21bp 5848 chr7 99722433 99722433 1 + G A UCEC 99722433 + 99722413 99722453 41 GAAGAGCAGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAAGG GAAGAGCAGGAGGAGGAGGAAGAAGAGGAGGAAGAGGAAGG Direct Loss 0.936193446877724 0 NA NA prediction 0.872386893755448 Functional Loss - CNPY4 ENSG00000166997 CDS Human protein_coding chr7:99722433 chr7:99722433 synonymous SNV . 0 21 hm7G_associated_SNPs_6034 0 0 1 0 1 CNPY4 chr7:99722348 3'AG 99722348 Downstream 86bp 5849 chr12 108956425 108956425 1 + G A rs11837563 108956425 + 108956405 108956445 41 GCGGCTGGGGCTTTCCGTCTGAGGCGGGCGGCATCGGCTCT GCGGCTGGGGCTTTCCGTCTAAGGCGGGCGGCATCGGCTCT Direct Loss 0.936188612751283 0 NA NA prediction 0.872377225502565 Functional Loss - ISCU ENSG00000136003 CDS Human protein_coding chr12:108956425 chr12:108956425 synonymous SNV . 0 21 hm7G_associated_SNPs_6037 0 0 1 0 1 ISCU chr12:108956512 5'GT 108956512 Upstream 88bp 5850 chr16 72045969 72045969 1 + G C LUSC 72045969 + 72045949 72045989 41 AAGCGGGCCCAGGATGCTGTGATCATCCTGGGGGGAGGAGG AAGCGGGCCCAGGATGCTGTCATCATCCTGGGGGGAGGAGG Direct Loss 0.93618548386555 0 NA NA prediction 0.872370967731101 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72045969 chr16:72045969 synonymous SNV . 0 21 hm7G_associated_SNPs_6038 0 0 1 0 1 DHODH chr16:72045949 3'AG 72045949 Downstream 21bp 5851 chr17 46929948 46929948 1 + G A HNSC 46929948 + 46929928 46929968 41 ACAGAGCAGTTAGAGCAGCTGAAAAAGGAAAATGACCACCT ACAGAGCAGTTAGAGCAGCTAAAAAAGGAAAATGACCACCT Direct Loss 0.936178681445418 0 NA NA prediction 0.872357362890835 Functional Loss - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46929948 chr17:46929948 synonymous SNV . 0 21 hm7G_associated_SNPs_6039 0 0 1 0 2 CALCOCO2 chr17:46929868 3'AG 46929868 Downstream 81bp 5852 chr17 46929948 46929948 1 + G A HNSC 46929948 + 46929928 46929968 41 ACAGAGCAGTTAGAGCAGCTGAAAAAGGAAAATGACCACCT ACAGAGCAGTTAGAGCAGCTAAAAAAGGAAAATGACCACCT Direct Loss 0.936178681445418 0 NA NA prediction 0.872357362890835 Functional Loss - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46929948 chr17:46929948 synonymous SNV . 0 21 hm7G_associated_SNPs_6039 0 0 1 0 2 CALCOCO2 chr17:46929990 5'GT 46929990 Upstream 43bp 5853 chr12 6973341 6973341 1 + G A SARC 6973341 + 6973321 6973361 41 TTCTCCCGGGACCAGGCCTTGAAAGCGCTGCGGGCCACGGT TTCTCCCGGGACCAGGCCTTAAAAGCGCTGCGGGCCACGGT Direct Loss 0.936174537507199 0 NA NA prediction 0.872349075014397 Functional Loss - USP5 ENSG00000111667 CDS Human protein_coding chr12:6973341 chr12:6973341 synonymous SNV . 0 21 hm7G_associated_SNPs_6040 0 0 1 0 1 USP5 chr12:6973359 5'GT 6973359 Upstream 19bp 5854 chr5 36680530 36680530 1 + G T SARC 36680530 + 36680510 36680550 41 CCCATCACCTTCAAGTGCCTGGAAGAGAACAATGGCGTGGA CCCATCACCTTCAAGTGCCTTGAAGAGAACAATGGCGTGGA Direct Loss 0.936167381922641 0 NA NA prediction 0.872334763845281 Functional Loss - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36680530 chr5:36680530 synonymous SNV . 0 21 hm7G_associated_SNPs_6041 0 0 0 0 1 SLC1A3 chr5:36680497 3'AG 36680497 Downstream 34bp 5855 chr7 45077926 45077926 1 + G A LUSC 45077926 + 45077906 45077946 41 GATAAGAAAGCCCATGAGAAGGTGACAGAGAGGCGCCCTCT GATAAGAAAGCCCATGAGAAAGTGACAGAGAGGCGCCCTCT Direct Loss 0.936166372747389 0 NA NA prediction 0.872332745494778 Functional Loss - CCM2 ENSG00000136280 CDS Human protein_coding chr7:45077926 chr7:45077926 synonymous SNV . 0 21 hm7G_associated_SNPs_6042 0 0 0 0 2 CCM2 chr7:45077852 3'AG 45077852 Downstream 75bp 5856 chr7 45077926 45077926 1 + G A LUSC 45077926 + 45077906 45077946 41 GATAAGAAAGCCCATGAGAAGGTGACAGAGAGGCGCCCTCT GATAAGAAAGCCCATGAGAAAGTGACAGAGAGGCGCCCTCT Direct Loss 0.936166372747389 0 NA NA prediction 0.872332745494778 Functional Loss - CCM2 ENSG00000136280 CDS Human protein_coding chr7:45077926 chr7:45077926 synonymous SNV . 0 21 hm7G_associated_SNPs_6042 0 0 0 0 2 CCM2 chr7:45078025 5'GT 45078025 Upstream 100bp 5857 chr6 37414099 37414099 1 + G T BLCA 37414099 + 37414079 37414119 41 TTCAGGGAAGGTGAAGGATTGGGTAAATACAGCCAGGGTCG TTCAGGGAAGGTGAAGGATTTGGTAAATACAGCCAGGGTCG Direct Loss 0.936157203579049 0 NA NA prediction 0.872314407158099 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37414099 chr6:37414099 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6043 0 0 1 0 1 CMTR1 chr6:37414067 3'AG 37414067 Downstream 33bp 5858 chr5 140080490 140080490 1 + G T UCEC 140080490 + 140080470 140080510 41 CTCACGGAAGAGAGAGAAAAGAAAGATGGTGGGTGCTAACT CTCACGGAAGAGAGAGAAAATAAAGATGGTGGGTGCTAACT Direct Loss 0.936156984099234 0 NA NA prediction 0.872313968198468 Functional Loss - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140080490 chr5:140080490 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6044 0 0 1 0 2 ZMAT2 chr5:140080404 3'AG 140080404 Downstream 87bp 5859 chr5 140080490 140080490 1 + G T UCEC 140080490 + 140080470 140080510 41 CTCACGGAAGAGAGAGAAAAGAAAGATGGTGGGTGCTAACT CTCACGGAAGAGAGAGAAAATAAAGATGGTGGGTGCTAACT Direct Loss 0.936156984099234 0 NA NA prediction 0.872313968198468 Functional Loss - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140080490 chr5:140080490 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6044 0 0 1 0 2 ZMAT2 chr5:140080497 5'GT 140080497 Upstream 8bp 5860 chr19 19351423 19351423 1 + G C CESC 19351423 + 19351403 19351443 41 ACCCTGCAGGCTTTGGGCATGAAAACACGTGGATCGGCCTG ACCCTGCAGGCTTTGGGCATCAAAACACGTGGATCGGCCTG Direct Loss 0.936153569002841 0 NA NA prediction 0.872307138005681 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19351423 chr19:19351423 nonsynonymous SNV 0.746 3 21 hm7G_associated_SNPs_6045 0 0 0 0 2 NCAN chr19:19351412 3'AG 19351412 Downstream 12bp 5861 chr19 19351423 19351423 1 + G C CESC 19351423 + 19351403 19351443 41 ACCCTGCAGGCTTTGGGCATGAAAACACGTGGATCGGCCTG ACCCTGCAGGCTTTGGGCATCAAAACACGTGGATCGGCCTG Direct Loss 0.936153569002841 0 NA NA prediction 0.872307138005681 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19351423 chr19:19351423 nonsynonymous SNV 0.746 3 21 hm7G_associated_SNPs_6045 0 0 0 0 2 NCAN chr19:19351494 5'GT 19351494 Upstream 72bp 5862 chr7 129948151 129948151 1 + G T HNSC 129948151 + 129948131 129948171 41 TTGGTGGCTTTTTCAGAACCGATTATGGAGGAAGACGCGGT TTGGTGGCTTTTTCAGAACCTATTATGGAGGAAGACGCGGT Direct Loss 0.936132564270179 0 NA NA prediction 0.872265128540358 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948151 chr7:129948151 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_6047 0 0 1 0 2 CPA4 chr7:129948147 3'AG 129948147 Downstream 5bp 5863 chr7 129948151 129948151 1 + G T HNSC 129948151 + 129948131 129948171 41 TTGGTGGCTTTTTCAGAACCGATTATGGAGGAAGACGCGGT TTGGTGGCTTTTTCAGAACCTATTATGGAGGAAGACGCGGT Direct Loss 0.936132564270179 0 NA NA prediction 0.872265128540358 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948151 chr7:129948151 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_6047 0 0 1 0 2 CPA4 chr7:129948237 5'GT 129948237 Upstream 87bp 5864 chr2 27825369 27825369 1 + G A BLCA 27825369 + 27825349 27825389 41 ATGAAATAGATGAGCCAAGTGAGAGGGAAAGGCTCCGAACA ATGAAATAGATGAGCCAAGTAAGAGGGAAAGGCTCCGAACA Direct Loss 0.936123062468965 0 NA NA prediction 0.87224612493793 Functional Loss - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27825369 chr2:27825369 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6049 0 0 1 0 2 ZNF512 chr2:27825330 3'AG 27825330 Downstream 40bp 5865 chr2 27825369 27825369 1 + G A BLCA 27825369 + 27825349 27825389 41 ATGAAATAGATGAGCCAAGTGAGAGGGAAAGGCTCCGAACA ATGAAATAGATGAGCCAAGTAAGAGGGAAAGGCTCCGAACA Direct Loss 0.936123062468965 0 NA NA prediction 0.87224612493793 Functional Loss - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27825369 chr2:27825369 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6049 0 0 1 0 2 ZNF512 chr2:27825428 5'GT 27825428 Upstream 60bp 5866 chr19 4684738 4684738 1 - C G LUAD 4684738 - 4684718 4684758 41 CTGGGCTACGCCGTGGTTGTGATTGACGGCAGGGGCTCCTG CTGGGCTACGCCGTGGTTGTCATTGACGGCAGGGGCTCCTG Direct Loss 0.936120799116482 0 NA NA prediction 0.872241598232964 Functional Loss - DPP9 ENSG00000142002 CDS Human protein_coding chr19:4684738 chr19:4684738 synonymous SNV . 0 21 hm7G_associated_SNPs_6050 0 0 1 0 2 DPP9 chr19:4684675 5'GT 4684675 Upstream 64bp 5867 chr19 4684738 4684738 1 - C G LUAD 4684738 - 4684718 4684758 41 CTGGGCTACGCCGTGGTTGTGATTGACGGCAGGGGCTCCTG CTGGGCTACGCCGTGGTTGTCATTGACGGCAGGGGCTCCTG Direct Loss 0.936120799116482 0 NA NA prediction 0.872241598232964 Functional Loss - DPP9 ENSG00000142002 CDS Human protein_coding chr19:4684738 chr19:4684738 synonymous SNV . 0 21 hm7G_associated_SNPs_6050 0 0 1 0 2 DPP9 chr19:4684821 3'AG 4684821 Downstream 84bp 5868 chr12 56863053 56863053 1 + G A READ 56863053 + 56863033 56863073 41 AGTTCCGGATAGGAGTGGCAGATGTGGACATGTCCCGGGAT AGTTCCGGATAGGAGTGGCAAATGTGGACATGTCCCGGGAT Direct Loss 0.936114182646384 0 NA NA prediction 0.872228365292768 Functional Loss - SPRYD4 ENSG00000176422 CDS Human protein_coding chr12:56863053 chr12:56863053 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6053 0 0 1 0 1 SPRYD4 chr12:56862992 3'AG 56862992 Downstream 62bp 5869 chr5 176823961 176823961 1 + G T LUAD 176823961 + 176823941 176823981 41 CTGTCCCCAGGTCTTGGTGTGATCAGCATTGAGAGGGCCTA CTGTCCCCAGGTCTTGGTGTTATCAGCATTGAGAGGGCCTA Direct Loss 0.936110453622752 0 NA NA prediction 0.872220907245504 Functional Loss - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176823961 chr5:176823961 synonymous SNV . 0 21 hm7G_associated_SNPs_6054 0 0 0 0 1 SLC34A1 chr5:176823951 3'AG 176823951 Downstream 11bp 5870 chr17 57684485 57684485 1 + G T UCEC 57684485 + 57684465 57684505 41 GCTCGTTTCCTTGAGAGAAAGCAGCAGAGGACCCAGGACCA GCTCGTTTCCTTGAGAGAAATCAGCAGAGGACCCAGGACCA Direct Loss 0.936108927608036 0 NA NA prediction 0.872217855216073 Functional Loss - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57684485 chr17:57684485 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_6055 0 0 1 0 1 DHX40 chr17:57684394 3'AG 57684394 Downstream 92bp 5871 chr6 123100942 123100942 1 + G A LUSC 123100942 + 123100922 123100962 41 AGAGGGGAAAGGGCAAGGATGGTGGAGGCTTTCTGTGCTAC AGAGGGGAAAGGGCAAGGATAGTGGAGGCTTTCTGTGCTAC Direct Loss 0.936106741087903 0 NA NA prediction 0.872213482175807 Functional Loss - FABP7 ENSG00000164434 CDS Human protein_coding chr6:123100942 chr6:123100942 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6056 0 0 0 0 1 FABP7 chr6:123101012 5'GT 123101012 Upstream 71bp 5872 chr16 67899106 67899106 1 + G C HNSC 67899106 + 67899086 67899126 41 ACTACCAGTTATTTGATAATGATAGAACCCAACTAGGCGCA ACTACCAGTTATTTGATAATCATAGAACCCAACTAGGCGCA Direct Loss 0.936105835133853 0 NA NA prediction 0.872211670267707 Functional Loss - NUTF2 ENSG00000102898 CDS Human protein_coding chr16:67899106 chr16:67899106 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_6057 0 0 1 0 1 NUTF2 chr16:67899132 5'GT 67899132 Upstream 27bp 5873 chr17 49340659 49340659 1 + G A UCEC 49340659 + 49340639 49340679 41 AAGAACATGAAGACTCGGGTGACTCAGAAGTGGAGAATGAA AAGAACATGAAGACTCGGGTAACTCAGAAGTGGAGAATGAA Direct Loss 0.936096483584953 0 NA NA prediction 0.872192967169906 Functional Loss - UTP18 ENSG00000011260 CDS Human protein_coding chr17:49340659 chr17:49340659 nonsynonymous SNV 0.827 2 21 hm7G_associated_SNPs_6058 0 0 1 0 2 UTP18 chr17:49340635 3'AG 49340635 Downstream 25bp 5874 chr17 49340659 49340659 1 + G A UCEC 49340659 + 49340639 49340679 41 AAGAACATGAAGACTCGGGTGACTCAGAAGTGGAGAATGAA AAGAACATGAAGACTCGGGTAACTCAGAAGTGGAGAATGAA Direct Loss 0.936096483584953 0 NA NA prediction 0.872192967169906 Functional Loss - UTP18 ENSG00000011260 CDS Human protein_coding chr17:49340659 chr17:49340659 nonsynonymous SNV 0.827 2 21 hm7G_associated_SNPs_6058 0 0 1 0 2 UTP18 chr17:49340747 5'GT 49340747 Upstream 89bp 5875 chr17 66518923 66518923 1 + G A rs74863634 66518923 + 66518903 66518943 41 GCAAAACAGATTCAGAATCTGCAGAAAGCAGGCACTCGTAC GCAAAACAGATTCAGAATCTACAGAAAGCAGGCACTCGTAC Direct Loss 0.936084788632437 0 NA NA prediction 0.872169577264874 Functional Loss - PRKAR1A ENSG00000108946 CDS Human protein_coding chr17:66518923 chr17:66518923 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_6060 3 0 1 0 1 PRKAR1A chr17:66518897 3'AG 66518897 Downstream 27bp 5876 chr7 128407602 128407602 1 + G A BLCA 128407602 + 128407582 128407622 41 AGTTTCGGGATAAGAACCGTGATGGGAAGATGGACAAGGAA AGTTTCGGGATAAGAACCGTAATGGGAAGATGGACAAGGAA Direct Loss 0.93608429034538 0 NA NA prediction 0.872168580690761 Functional Loss - CALU ENSG00000128595 CDS Human protein_coding chr7:128407602 chr7:128407602 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_6061 0 0 1 0 1 CALU chr7:128407510 3'AG 128407510 Downstream 93bp 5877 chr13 38933458 38933458 1 + G T LIHC 38933458 + 38933438 38933478 41 ATGGAATAGGAATAAATCCTGCACAGACTGCTGGTGAGTAT ATGGAATAGGAATAAATCCTTCACAGACTGCTGGTGAGTAT Direct Loss 0.936084185971859 0 NA NA prediction 0.872168371943719 Functional Loss - UFM1 ENSG00000120686 CDS Human protein_coding chr13:38933458 chr13:38933458 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6062 0 0 1 0 2 UFM1 chr13:38933438 3'AG 38933438 Downstream 21bp 5878 chr13 38933458 38933458 1 + G T LIHC 38933458 + 38933438 38933478 41 ATGGAATAGGAATAAATCCTGCACAGACTGCTGGTGAGTAT ATGGAATAGGAATAAATCCTTCACAGACTGCTGGTGAGTAT Direct Loss 0.936084185971859 0 NA NA prediction 0.872168371943719 Functional Loss - UFM1 ENSG00000120686 CDS Human protein_coding chr13:38933458 chr13:38933458 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6062 0 0 1 0 2 UFM1 chr13:38933470 5'GT 38933470 Upstream 13bp 5879 chrX 84519343 84519343 1 + G T UCEC 84519343 + 84519323 84519363 41 CATTAAAAATTGGCAGTGATGGTTCACAAGAAGATGCTAAA CATTAAAAATTGGCAGTGATTGTTCACAAGAAGATGCTAAA Direct Loss 0.936081506261113 0 NA NA prediction 0.872163012522226 Functional Loss - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84519343 chrX:84519343 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6063 0 0 1 0 2 ZNF711 chrX:84519281 3'AG 84519281 Downstream 63bp 5880 chrX 84519343 84519343 1 + G T UCEC 84519343 + 84519323 84519363 41 CATTAAAAATTGGCAGTGATGGTTCACAAGAAGATGCTAAA CATTAAAAATTGGCAGTGATTGTTCACAAGAAGATGCTAAA Direct Loss 0.936081506261113 0 NA NA prediction 0.872163012522226 Functional Loss - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84519343 chrX:84519343 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6063 0 0 1 0 2 ZNF711 chrX:84519436 5'GT 84519436 Upstream 94bp 5881 chr9 96081396 96081396 1 - C A STAD 96081396 - 96081376 96081416 41 GTACAAGGAAGGGATTCACAGGCAAGGGGGACAGGTGAGGG GTACAAGGAAGGGATTCACATGCAAGGGGGACAGGTGAGGG Direct Loss 0.936061999025491 0 NA NA prediction 0.872123998050981 Functional Loss - C9orf129 ENSG00000204352 CDS Human protein_coding chr9:96081396 chr9:96081396 nonsynonymous SNV 0.001 1 21 hm7G_associated_SNPs_6065 0 0 0 0 2 C9orf129 chr9:96081383 5'GT 96081383 Upstream 14bp 5882 chr9 96081396 96081396 1 - C A STAD 96081396 - 96081376 96081416 41 GTACAAGGAAGGGATTCACAGGCAAGGGGGACAGGTGAGGG GTACAAGGAAGGGATTCACATGCAAGGGGGACAGGTGAGGG Direct Loss 0.936061999025491 0 NA NA prediction 0.872123998050981 Functional Loss - C9orf129 ENSG00000204352 CDS Human protein_coding chr9:96081396 chr9:96081396 nonsynonymous SNV 0.001 1 21 hm7G_associated_SNPs_6065 0 0 0 0 2 C9orf129 chr9:96081456 3'AG 96081456 Downstream 61bp 5883 chr17 7323841 7323841 1 + G A SKCM 7323841 + 7323821 7323861 41 AACATTAGCATCAATATAGTGACCCTGGTCAGGGTGGGGCC AACATTAGCATCAATATAGTAACCCTGGTCAGGGTGGGGCC Direct Loss 0.936058473020032 0 NA NA prediction 0.872116946040063 Functional Loss - SPEM1 ENSG00000181323 CDS Human protein_coding chr17:7323841 chr17:7323841 synonymous SNV . 0 21 hm7G_associated_SNPs_6067 0 0 0 0 1 SPEM1 chr17:7323847 5'GT 7323847 Upstream 7bp 5884 chr6 116910112 116910112 1 + G T COAD 116910112 + 116910092 116910132 41 ACTAGAAGAGAAGAAGAAAAGAAACAAAAAGAAAAAGAAGC ACTAGAAGAGAAGAAGAAAATAAACAAAAAGAAAAAGAAGC Direct Loss 0.93604805061819 0 NA NA prediction 0.872096101236379 Functional Loss - RWDD1 ENSG00000111832 CDS Human protein_coding chr6:116910112 chr6:116910112 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6069 0 0 1 0 1 RWDD1 chr6:116910148 5'GT 116910148 Upstream 37bp 5885 chr17 57351060 57351060 1 + G A STAD 57351060 + 57351040 57351080 41 AAGAATACAAAAGAGCTTTTGATTTGGGAGCAACTGGGGTG AAGAATACAAAAGAGCTTTTAATTTGGGAGCAACTGGGGTG Direct Loss 0.936038480069215 0 NA NA prediction 0.87207696013843 Functional Loss - GDPD1 ENSG00000153982 CDS Human protein_coding chr17:57351060 chr17:57351060 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6070 0 0 1 0 1 GDPD1 chr17:57351012 3'AG 57351012 Downstream 49bp 5886 chr16 84229576 84229576 1 + G A SKCM 84229576 + 84229556 84229596 41 CAGTGACAAGCTGGCACGCTGGGCCGTGCTGGGGCTGGGTG CAGTGACAAGCTGGCACGCTAGGCCGTGCTGGGGCTGGGTG Direct Loss 0.936029322666305 0 NA NA prediction 0.87205864533261 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84229576 chr16:84229576 stopgain 0.336 1 21 hm7G_associated_SNPs_6072 0 0 0 0 1 ADAD2 chr16:84229650 5'GT 84229650 Upstream 75bp 5887 chr4 71471944 71471944 1 + G A SKCM 71471944 + 71471924 71471964 41 CCTATGGAGCCATGTTTCCAGGATTTGGAGGCATGAGGCCC CCTATGGAGCCATGTTTCCAAGATTTGGAGGCATGAGGCCC Direct Loss 0.936012953106724 0 NA NA prediction 0.872025906213447 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71471944 chr4:71471944 nonsynonymous SNV 0.802 0 21 hm7G_associated_SNPs_6073 0 0 0 0 1 AMBN chr4:71471902 3'AG 71471902 Downstream 43bp 5888 chr12 58000757 58000757 1 + G A SKCM 58000757 + 58000737 58000777 41 AAAGAGACCCCAGCCCGGCTGGCCCGGCTTCGGGAGGAGCA AAAGAGACCCCAGCCCGGCTAGCCCGGCTTCGGGAGGAGCA Direct Loss 0.935997773044816 0 NA NA prediction 0.871995546089631 Functional Loss - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58000757 chr12:58000757 synonymous SNV . 0 21 hm7G_associated_SNPs_6076 0 0 1 0 1 DTX3 chr12:58000667 3'AG 58000667 Downstream 91bp 5889 chrX 19373540 19373540 1 + G A UCEC 19373540 + 19373520 19373560 41 TTTCATCTGTGAGAATAATCGCTATGGAATGGGAACGTCTG TTTCATCTGTGAGAATAATCACTATGGAATGGGAACGTCTG Direct Loss 0.935995913922672 0 NA NA prediction 0.871991827845343 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19373540 chrX:19373540 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6077 0 0 1 0 1 PDHA1 chrX:19373467 3'AG 19373467 Downstream 74bp 5890 chr5 178294014 178294014 1 + G A UCEC 178294014 + 178293994 178294034 41 CCAAAAGTCATCTCCCTGTTGCAGCAAGGAGAAGATCCCTG CCAAAAGTCATCTCCCTGTTACAGCAAGGAGAAGATCCCTG Direct Loss 0.935971242961197 0 NA NA prediction 0.871942485922393 Functional Loss - ZNF354B ENSG00000178338 CDS Human protein_coding chr5:178294014 chr5:178294014 synonymous SNV . 0 21 hm7G_associated_SNPs_6079 0 0 1 0 2 ZNF354B chr5:178293977 3'AG 178293977 Downstream 38bp 5891 chr5 178294014 178294014 1 + G A UCEC 178294014 + 178293994 178294034 41 CCAAAAGTCATCTCCCTGTTGCAGCAAGGAGAAGATCCCTG CCAAAAGTCATCTCCCTGTTACAGCAAGGAGAAGATCCCTG Direct Loss 0.935971242961197 0 NA NA prediction 0.871942485922393 Functional Loss - ZNF354B ENSG00000178338 CDS Human protein_coding chr5:178294014 chr5:178294014 synonymous SNV . 0 21 hm7G_associated_SNPs_6079 0 0 1 0 2 ZNF354B chr5:178294072 5'GT 178294072 Upstream 59bp 5892 chr5 130515811 130515811 1 + G A rs113642581 130515811 + 130515791 130515831 41 TTACAGCTCTTTAAAACACTGCACAGGACCAGACAACAAGT TTACAGCTCTTTAAAACACTACACAGGACCAGACAACAAGT Direct Loss 0.935966766776391 0 NA NA prediction 0.871933533552781 Functional Loss - LYRM7 ENSG00000186687 CDS Human protein_coding chr5:130515811 chr5:130515811 synonymous SNV . 0 21 hm7G_associated_SNPs_6082 1 0 1 0 2 LYRM7 chr5:130515788 3'AG 130515788 Downstream 24bp 5893 chr5 130515811 130515811 1 + G A rs113642581 130515811 + 130515791 130515831 41 TTACAGCTCTTTAAAACACTGCACAGGACCAGACAACAAGT TTACAGCTCTTTAAAACACTACACAGGACCAGACAACAAGT Direct Loss 0.935966766776391 0 NA NA prediction 0.871933533552781 Functional Loss - LYRM7 ENSG00000186687 CDS Human protein_coding chr5:130515811 chr5:130515811 synonymous SNV . 0 21 hm7G_associated_SNPs_6082 1 0 1 0 2 LYRM7 chr5:130515860 5'GT 130515860 Upstream 50bp 5894 chr13 76141391 76141391 1 + G A LAML 76141391 + 76141371 76141411 41 TCAACCTTGAAAAAATTCCTGGAGGAATCTGTGTCAATGAG TCAACCTTGAAAAAATTCCTAGAGGAATCTGTGTCAATGAG Direct Loss 0.93595480623762 0 NA NA prediction 0.871909612475239 Functional Loss - UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76141391 chr13:76141391 synonymous SNV . 0 21 hm7G_associated_SNPs_6084 0 0 1 0 2 UCHL3 chr13:76141363 3'AG 76141363 Downstream 29bp 5895 chr13 76141391 76141391 1 + G A LAML 76141391 + 76141371 76141411 41 TCAACCTTGAAAAAATTCCTGGAGGAATCTGTGTCAATGAG TCAACCTTGAAAAAATTCCTAGAGGAATCTGTGTCAATGAG Direct Loss 0.93595480623762 0 NA NA prediction 0.871909612475239 Functional Loss - UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76141391 chr13:76141391 synonymous SNV . 0 21 hm7G_associated_SNPs_6084 0 0 1 0 2 UCHL3 chr13:76141448 5'GT 76141448 Upstream 58bp 5896 chr6 3129308 3129308 1 + G A rs148936859 3129308 + 3129288 3129328 41 TTTAAGAAGGTTTCTCTGCTGGGGTGGAGTGATGGGGGCAT TTTAAGAAGGTTTCTCTGCTAGGGTGGAGTGATGGGGGCAT Direct Loss 0.935951025693539 0 NA NA prediction 0.871902051387079 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3129308 chr6:3129308 synonymous SNV . 0 21 hm7G_associated_SNPs_6085 0 0 1 0 1 BPHL chr6:3129279 3'AG 3129279 Downstream 30bp 5897 chr6 90331670 90331670 1 + G C UCEC 90331670 + 90331650 90331690 41 TTCAGTCGTGGGCGAAGCCTGAGGAAAAAGAGAGAGAGGCT TTCAGTCGTGGGCGAAGCCTCAGGAAAAAGAGAGAGAGGCT Direct Loss 0.935938436645095 0 NA NA prediction 0.871876873290191 Functional Loss - ANKRD6 ENSG00000135299 CDS Human other chr6:90331670 chr6:90331670 synonymous SNV . 0 21 hm7G_associated_SNPs_6086 0 0 0 0 2 ANKRD6 chr6:90331641 3'AG 90331641 Downstream 30bp 5898 chr6 90331670 90331670 1 + G C UCEC 90331670 + 90331650 90331690 41 TTCAGTCGTGGGCGAAGCCTGAGGAAAAAGAGAGAGAGGCT TTCAGTCGTGGGCGAAGCCTCAGGAAAAAGAGAGAGAGGCT Direct Loss 0.935938436645095 0 NA NA prediction 0.871876873290191 Functional Loss - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90331670 chr6:90331670 synonymous SNV . 0 21 hm7G_associated_SNPs_6086 0 0 0 0 2 ANKRD6 chr6:90331745 5'GT 90331745 Upstream 76bp 5899 chr7 73085442 73085442 1 + G A rs186005344 73085442 + 73085422 73085462 41 GCCCACCTGAGGCGGACGCAGGCAGAGAAGCTGCAGGAGCT GCCCACCTGAGGCGGACGCAAGCAGAGAAGCTGCAGGAGCT Direct Loss 0.93593568848295 0 NA NA prediction 0.871871376965899 Functional Loss - VPS37D ENSG00000176428 CDS Human protein_coding chr7:73085442 chr7:73085442 synonymous SNV . 0 21 hm7G_associated_SNPs_6087 0 0 0 0 1 VPS37D chr7:73085344 3'AG 73085344 Downstream 99bp 5900 chr17 54526504 54526504 1 + G A BLCA 54526504 + 54526484 54526524 41 AGTGAAGTTTTGGAAGGTCTGCTGCAGCAGGTCCGAGCCCT AGTGAAGTTTTGGAAGGTCTACTGCAGCAGGTCCGAGCCCT Direct Loss 0.935930943740556 0 NA NA prediction 0.871861887481112 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54526504 chr17:54526504 synonymous SNV . 0 21 hm7G_associated_SNPs_6088 0 0 0 0 2 ANKFN1 chr17:54526440 3'AG 54526440 Downstream 65bp 5901 chr17 54526504 54526504 1 + G A BLCA 54526504 + 54526484 54526524 41 AGTGAAGTTTTGGAAGGTCTGCTGCAGCAGGTCCGAGCCCT AGTGAAGTTTTGGAAGGTCTACTGCAGCAGGTCCGAGCCCT Direct Loss 0.935930943740556 0 NA NA prediction 0.871861887481112 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54526504 chr17:54526504 synonymous SNV . 0 21 hm7G_associated_SNPs_6088 0 0 0 0 2 ANKFN1 chr17:54526547 5'GT 54526547 Upstream 44bp 5902 chr1 109338861 109338861 1 + G C rs1127635 109338861 + 109338841 109338881 41 TTTATTTTCATTAAGGACCTGGCACTTGGAACTGATGCAGA TTTATTTTCATTAAGGACCTCGCACTTGGAACTGATGCAGA Direct Loss 0.935930848001449 0 NA NA prediction 0.871861696002899 Functional Loss - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109338861 chr1:109338861 synonymous SNV . 0 21 hm7G_associated_SNPs_6089 0 0 1 1 1 STXBP3 chr1:109338856 3'AG 109338856 Downstream 6bp 5903 chr16 726497 726497 1 + G A BLCA 726497 + 726477 726517 41 TACCAGGAGCTGGTGGACCTGGTCAGTGCCACGGTGGGCAG TACCAGGAGCTGGTGGACCTAGTCAGTGCCACGGTGGGCAG Direct Loss 0.935925374338904 0 NA NA prediction 0.871850748677809 Functional Loss - RHBDL1 ENSG00000103269 CDS Human protein_coding chr16:726497 chr16:726497 synonymous SNV . 0 21 hm7G_associated_SNPs_6091 0 0 1 0 1 RHBDL1 chr16:726497 5'GT 726497 Upstream 1bp 5904 chr1 154296085 154296085 1 + G A SKCM 154296085 + 154296065 154296105 41 GTTCTGGGCACTGGGATGCTGATTGTGGGGCTCTTGGCCAT GTTCTGGGCACTGGGATGCTAATTGTGGGGCTCTTGGCCAT Direct Loss 0.935918052703714 0 NA NA prediction 0.871836105407428 Functional Loss - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296085 chr1:154296085 synonymous SNV . 0 21 hm7G_associated_SNPs_6092 0 0 0 0 1 AQP10 chr1:154296065 3'AG 154296065 Downstream 21bp 5905 chr11 16766187 16766187 1 + G A LUSC 16766187 + 16766167 16766207 41 AGGCAGCAGACTTGGGTAATGAAGAGAGAAAACAAAAGTTC AGGCAGCAGACTTGGGTAATAAAGAGAGAAAACAAAAGTTC Direct Loss 0.935917719276784 0 NA NA prediction 0.871835438553568 Functional Loss - C11orf58 ENSG00000110696 CDS Human protein_coding chr11:16766187 chr11:16766187 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6094 0 0 1 0 2 C11orf58 chr11:16766148 3'AG 16766148 Downstream 40bp 5906 chr11 16766187 16766187 1 + G A LUSC 16766187 + 16766167 16766207 41 AGGCAGCAGACTTGGGTAATGAAGAGAGAAAACAAAAGTTC AGGCAGCAGACTTGGGTAATAAAGAGAGAAAACAAAAGTTC Direct Loss 0.935917719276784 0 NA NA prediction 0.871835438553568 Functional Loss - C11orf58 ENSG00000110696 CDS Human protein_coding chr11:16766187 chr11:16766187 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6094 0 0 1 0 2 C11orf58 chr11:16766231 5'GT 16766231 Upstream 45bp 5907 chr8 24256428 24256428 1 + G A SKCM 24256428 + 24256408 24256448 41 CAAGTGGCCTTGGTAGGTATGGAAATCTGGTCTGATGGGGA CAAGTGGCCTTGGTAGGTATAGAAATCTGGTCTGATGGGGA Direct Loss 0.935899429365808 0 NA NA prediction 0.871798858731616 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256428 chr8:24256428 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_6098 0 0 0 0 1 ADAMDEC1 chr8:24256387 3'AG 24256387 Downstream 42bp 5908 chr1 38027768 38027768 1 + G T SARC 38027768 + 38027748 38027788 41 GAAGCCACTGAGAAGCGGGAGAGCGAGAGGCGGCAGGTGGA GAAGCCACTGAGAAGCGGGATAGCGAGAGGCGGCAGGTGGA Direct Loss 0.9358936861323 0 NA NA prediction 0.8717873722646 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027768 chr1:38027768 nonsynonymous SNV 0.925 3 21 hm7G_associated_SNPs_6101 0 0 0 0 2 DNALI1 chr1:38027682 3'AG 38027682 Downstream 87bp 5909 chr1 38027768 38027768 1 + G T SARC 38027768 + 38027748 38027788 41 GAAGCCACTGAGAAGCGGGAGAGCGAGAGGCGGCAGGTGGA GAAGCCACTGAGAAGCGGGATAGCGAGAGGCGGCAGGTGGA Direct Loss 0.9358936861323 0 NA NA prediction 0.8717873722646 Functional Loss - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38027768 chr1:38027768 nonsynonymous SNV 0.925 3 21 hm7G_associated_SNPs_6101 0 0 0 0 2 DNALI1 chr1:38027846 5'GT 38027846 Upstream 79bp 5910 chrX 23689672 23689672 1 + G A UCEC 23689672 + 23689652 23689692 41 AGCCAGCGCCCTACTGGGAAGGAACAGCTGTGATCGATGGA AGCCAGCGCCCTACTGGGAAAGAACAGCTGTGATCGATGGA Direct Loss 0.935889824406291 0 NA NA prediction 0.871779648812582 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23689672 chrX:23689672 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6102 0 0 1 0 2 PRDX4 chrX:23689646 3'AG 23689646 Downstream 27bp 5911 chrX 23689672 23689672 1 + G A UCEC 23689672 + 23689652 23689692 41 AGCCAGCGCCCTACTGGGAAGGAACAGCTGTGATCGATGGA AGCCAGCGCCCTACTGGGAAAGAACAGCTGTGATCGATGGA Direct Loss 0.935889824406291 0 NA NA prediction 0.871779648812582 Functional Loss - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23689672 chrX:23689672 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6102 0 0 1 0 2 PRDX4 chrX:23689763 5'GT 23689763 Upstream 92bp 5912 chr12 58002887 58002887 1 + G T BLCA 58002887 + 58002867 58002907 41 TACCCAGACCCCACCTACCTGACCCGGGTGCAAGAGGAGCT TACCCAGACCCCACCTACCTTACCCGGGTGCAAGAGGAGCT Direct Loss 0.935885440675421 0 NA NA prediction 0.871770881350842 Functional Loss - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002887 chr12:58002887 synonymous SNV . 0 21 hm7G_associated_SNPs_6103 0 0 1 0 1 DTX3 chr12:58002860 3'AG 58002860 Downstream 28bp 5913 chr5 140037240 140037240 1 + G A SKCM 140037240 + 140037220 140037260 41 AACAAGAAGCTTAAGAAGAAGGATAAAGGTACCTGGAGGGT AACAAGAAGCTTAAGAAGAAAGATAAAGGTACCTGGAGGGT Direct Loss 0.935881848949517 0 NA NA prediction 0.871763697899034 Functional Loss - IK ENSG00000113141 CDS Human protein_coding chr5:140037240 chr5:140037240 synonymous SNV . 0 21 hm7G_associated_SNPs_6104 0 0 1 0 1 IK chr5:140037247 5'GT 140037247 Upstream 8bp 5914 chr17 1656056 1656056 1 + G A UCEC 1656056 + 1656036 1656076 41 CTGTATCTGAAACACCAAATGGACCTGGTGGCCACCCTCAG CTGTATCTGAAACACCAAATAGACCTGGTGGCCACCCTCAG Direct Loss 0.935878733089399 0 NA NA prediction 0.871757466178797 Functional Loss - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1656056 chr17:1656056 nonsynonymous SNV 0.897 1 21 hm7G_associated_SNPs_6107 0 0 1 0 1 SERPINF2 chr17:1656084 5'GT 1656084 Upstream 29bp 5915 chr10 71160827 71160827 1 + G T SARC 71160827 + 71160807 71160847 41 CCTCCTGTCTGAGGATGGCAGCGGCAAGGGGGCCGCCCTCA CCTCCTGTCTGAGGATGGCATCGGCAAGGGGGCCGCCCTCA Direct Loss 0.935855875492939 0 NA NA prediction 0.871711750985877 Functional Loss - HK1 ENSG00000156515 CDS Human protein_coding chr10:71160827 chr10:71160827 nonsynonymous SNV 0.994 5 21 hm7G_associated_SNPs_6109 0 0 1 0 1 HK1 chr10:71160747 3'AG 71160747 Downstream 81bp 5916 chr19 36164145 36164145 1 - C T CESC 36164145 - 36164125 36164165 41 AAGATGTAGACGATGAGCATGAGCACCAGGTACTGGGGAGA AAGATGTAGACGATGAGCATAAGCACCAGGTACTGGGGAGA Direct Loss 0.935845483244905 0 NA NA prediction 0.871690966489809 Functional Loss - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36164145 chr19:36164145 synonymous SNV . 0 21 hm7G_associated_SNPs_6111 0 0 0 0 1 UPK1A chr19:36164137 5'GT 36164137 Upstream 9bp 5917 chr16 2569581 2569581 1 + G C BLCA 2569581 + 2569561 2569601 41 GCCGGCCTGAGCGTGGGCCTGAGCGGCCTGGCAGCCGGCTT GCCGGCCTGAGCGTGGGCCTCAGCGGCCTGGCAGCCGGCTT Direct Loss 0.935834170576948 0 NA NA prediction 0.871668341153897 Functional Loss - ATP6V0C ENSG00000185883 CDS Human protein_coding chr16:2569581 chr16:2569581 synonymous SNV . 0 21 hm7G_associated_SNPs_6112 0 0 1 0 1 ATP6V0C chr16:2569542 3'AG 2569542 Downstream 40bp 5918 chr4 57366808 57366808 1 + G T STAD 57366808 + 57366788 57366828 41 AGAAAGAAGGGTAAAAAGAAGGATCAGATTGGAAAAGGGAC AGAAAGAAGGGTAAAAAGAATGATCAGATTGGAAAAGGGAC Direct Loss 0.93581777848711 0 NA NA prediction 0.87163555697422 Functional Loss - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57366808 chr4:57366808 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6115 0 0 1 2 1 SRP72 chr4:57366861 5'GT 57366861 Upstream 54bp 5919 chr19 8467024 8467024 1 + G C DLBC 8467024 + 8467004 8467044 41 TACGACATCGCCAAGCACCTGACCTATGAGAACGTGGAGCG TACGACATCGCCAAGCACCTCACCTATGAGAACGTGGAGCG Direct Loss 0.935817044439779 0 NA NA prediction 0.871634088879558 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8467024 chr19:8467024 synonymous SNV . 0 21 hm7G_associated_SNPs_6116 0 0 1 0 1 RAB11B chr19:8466970 3'AG 8466970 Downstream 55bp 5920 chr2 27322146 27322146 1 + G C SARC 27322146 + 27322126 27322166 41 GGGCTTGTATGGTCGTGTGAGGAAAGGGTGAGCCGGGGAAG GGGCTTGTATGGTCGTGTGACGAAAGGGTGAGCCGGGGAAG Direct Loss 0.935811093016523 0 NA NA prediction 0.871622186033046 Functional Loss - KHK ENSG00000138030 CDS Human protein_coding chr2:27322146 chr2:27322146 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_6117 0 0 1 0 1 KHK chr2:27322064 3'AG 27322064 Downstream 83bp 5921 chr12 86272216 86272216 1 + G T UCEC 86272216 + 86272196 86272236 41 GCCCAGCTGAGGAAACAGGAGAAGTTCATGAAGAGGAGCTT GCCCAGCTGAGGAAACAGGATAAGTTCATGAAGAGGAGCTT Direct Loss 0.935808953924671 0 NA NA prediction 0.871617907849342 Functional Loss - NTS ENSG00000133636 CDS Human protein_coding chr12:86272216 chr12:86272216 stopgain 0.867 1 21 hm7G_associated_SNPs_6118 0 0 0 0 1 NTS chr12:86272123 3'AG 86272123 Downstream 94bp 5922 chr12 81627152 81627152 1 + G A LAML 81627152 + 81627132 81627172 41 ATTATGATACCATGGATGCTGGTTACATGGATGAAGAAGGC ATTATGATACCATGGATGCTAGTTACATGGATGAAGAAGGC Direct Loss 0.935807552684799 0 NA NA prediction 0.871615105369598 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81627152 chr12:81627152 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_6119 0 0 1 0 2 ACSS3 chr12:81627128 3'AG 81627128 Downstream 25bp 5923 chr12 81627152 81627152 1 + G A LAML 81627152 + 81627132 81627172 41 ATTATGATACCATGGATGCTGGTTACATGGATGAAGAAGGC ATTATGATACCATGGATGCTAGTTACATGGATGAAGAAGGC Direct Loss 0.935807552684799 0 NA NA prediction 0.871615105369598 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81627152 chr12:81627152 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_6119 0 0 1 0 2 ACSS3 chr12:81627250 5'GT 81627250 Upstream 99bp 5924 chr6 16239004 16239004 1 + G C CESC 16239004 + 16238984 16239024 41 GCGGAGCAGCCTCAAGAGCCGAGCCGAGGTGGGGGACGTTC GCGGAGCAGCCTCAAGAGCCCAGCCGAGGTGGGGGACGTTC Direct Loss 0.935806199286686 0 NA NA prediction 0.871612398573371 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16239004 chr6:16239004 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_6120 0 0 1 0 1 GMPR chr6:16239011 5'GT 16239011 Upstream 8bp 5925 chr2 26486306 26486306 1 + G T LUAD 26486306 + 26486286 26486326 41 AATATAAGGAATGTTGTGGTGGTGGATGGTGTTCGCACTCC AATATAAGGAATGTTGTGGTTGTGGATGGTGTTCGCACTCC Direct Loss 0.935805993121679 0 NA NA prediction 0.871611986243358 Functional Loss - HADHB ENSG00000138029 CDS Human protein_coding chr2:26486306 chr2:26486306 synonymous SNV . 0 21 hm7G_associated_SNPs_6121 0 0 1 2 1 HADHB chr2:26486248 3'AG 26486248 Downstream 59bp 5926 chr1 150236264 150236264 1 + G A rs183441903 150236264 + 150236244 150236284 41 TCCTGGCTGTTTATTTCATTGCTAGAAAGATTCGGTGAGGC TCCTGGCTGTTTATTTCATTACTAGAAAGATTCGGTGAGGC Direct Loss 0.935778796453292 0 NA NA prediction 0.871557592906585 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150236264 chr1:150236264 nonsynonymous SNV 0.984 0 21 hm7G_associated_SNPs_6124 0 0 0 0 2 CA14 chr1:150236193 3'AG 150236193 Downstream 72bp 5927 chr1 150236264 150236264 1 + G A rs183441903 150236264 + 150236244 150236284 41 TCCTGGCTGTTTATTTCATTGCTAGAAAGATTCGGTGAGGC TCCTGGCTGTTTATTTCATTACTAGAAAGATTCGGTGAGGC Direct Loss 0.935778796453292 0 NA NA prediction 0.871557592906585 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150236264 chr1:150236264 nonsynonymous SNV 0.984 0 21 hm7G_associated_SNPs_6124 0 0 0 0 2 CA14 chr1:150236277 5'GT 150236277 Upstream 14bp 5928 chr8 95709083 95709083 1 + G A COAD 95709083 + 95709063 95709103 41 TTTAACTTGCATTTTAGTATGCAACCGAGGATGGACTTATA TTTAACTTGCATTTTAGTATACAACCGAGGATGGACTTATA Direct Loss 0.935776553679426 0 NA NA prediction 0.871553107358851 Functional Loss - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95709083 chr8:95709083 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6125 0 0 0 0 1 ESRP1 chr8:95709080 3'AG 95709080 Downstream 4bp 5929 chr2 45170049 45170049 1 + G T STAD 45170049 + 45170029 45170069 41 CGCCGCGGCGGCCAAGAACAGGTTAGTGGCGGGGCCCGCGG CGCCGCGGCGGCCAAGAACATGTTAGTGGCGGGGCCCGCGG Direct Loss 0.935771859527819 0 NA NA prediction 0.871543719055638 Functional Loss - SIX3 ENSG00000138083 CDS Human protein_coding chr2:45170049 chr2:45170049 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6126 0 0 0 0 1 SIX3 chr2:45170049 5'GT 45170049 Upstream 1bp 5930 chr1 20975041 20975041 1 + G A rs534505756 20975041 + 20975021 20975061 41 GCAGATTTTGGCTGCTGCCTGGCTGATGAGAGCATCGGCCT GCAGATTTTGGCTGCTGCCTAGCTGATGAGAGCATCGGCCT Direct Loss 0.935769973980178 0 NA NA prediction 0.871539947960355 Functional Loss - PINK1 ENSG00000158828 CDS Human protein_coding chr1:20975041 chr1:20975041 synonymous SNV . 0 21 hm7G_associated_SNPs_6127 0 0 1 0 2 PINK1 chr1:20974998 3'AG 20974998 Downstream 44bp 5931 chr1 20975041 20975041 1 + G A rs534505756 20975041 + 20975021 20975061 41 GCAGATTTTGGCTGCTGCCTGGCTGATGAGAGCATCGGCCT GCAGATTTTGGCTGCTGCCTAGCTGATGAGAGCATCGGCCT Direct Loss 0.935769973980178 0 NA NA prediction 0.871539947960355 Functional Loss - PINK1 ENSG00000158828 CDS Human protein_coding chr1:20975041 chr1:20975041 synonymous SNV . 0 21 hm7G_associated_SNPs_6127 0 0 1 0 2 PINK1 chr1:20975125 5'GT 20975125 Upstream 85bp 5932 chr6 116910131 116910131 1 + G A COAD 116910131 + 116910111 116910151 41 AGAAACAAAAAGAAAAAGAAGCAGAAGAAGCTGAAAAGGTA AGAAACAAAAAGAAAAAGAAACAGAAGAAGCTGAAAAGGTA Direct Loss 0.935751184574487 0 NA NA prediction 0.871502369148975 Functional Loss - RWDD1 ENSG00000111832 CDS Human protein_coding chr6:116910131 chr6:116910131 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_6128 0 0 1 0 1 RWDD1 chr6:116910148 5'GT 116910148 Upstream 18bp 5933 chr16 3705518 3705518 1 + G C GBM 3705518 + 3705498 3705538 41 ACCCTCGTCAGCTACATTGTGCAGGTGAGGCCAGGGCAGCC ACCCTCGTCAGCTACATTGTCCAGGTGAGGCCAGGGCAGCC Direct Loss 0.935738143408748 0 NA NA prediction 0.871476286817497 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3705518 chr16:3705518 synonymous SNV . 0 21 hm7G_associated_SNPs_6130 0 0 1 0 1 DNASE1 chr16:3705521 5'GT 3705521 Upstream 4bp 5934 chr19 5914685 5914685 1 + G A STAD 5914685 + 5914665 5914705 41 CAGGCGGAGGCAGAGGGTGTGTGCAGGAAGTGGGACCGCAA CAGGCGGAGGCAGAGGGTGTATGCAGGAAGTGGGACCGCAA Direct Loss 0.93573733085345 0 NA NA prediction 0.8714746617069 Functional Loss - CAPS ENSG00000105519 CDS Human protein_coding chr19:5914685 chr19:5914685 synonymous SNV . 0 21 hm7G_associated_SNPs_6131 0 0 0 0 1 CAPS chr19:5914751 5'GT 5914751 Upstream 67bp 5935 chr7 140386882 140386882 1 + G T CESC 140386882 + 140386862 140386902 41 TCCTCGAGTCAGGAGGCGCAGCTGCAGCAGGCGGACATCTG TCCTCGAGTCAGGAGGCGCATCTGCAGCAGGCGGACATCTG Direct Loss 0.935725306591777 0 NA NA prediction 0.871450613183554 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140386882 chr7:140386882 nonsynonymous SNV 0.189 0 21 hm7G_associated_SNPs_6133 0 0 1 0 1 ADCK2 chr7:140386790 3'AG 140386790 Downstream 93bp 5936 chrX 153693492 153693492 1 + G A STAD 153693492 + 153693472 153693512 41 TATGAGTGCGTGGTGCGGGTGCAGGGGCGGCAGCAGCGGGT TATGAGTGCGTGGTGCGGGTACAGGGGCGGCAGCAGCGGGT Direct Loss 0.935725020470589 0 NA NA prediction 0.871450040941177 Functional Loss - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153693492 chrX:153693492 synonymous SNV . 0 21 hm7G_associated_SNPs_6134 0 0 1 0 1 PLXNA3 chrX:153693561 5'GT 153693561 Upstream 70bp 5937 chr5 154172296 154172296 1 + G T STAD 154172296 + 154172276 154172316 41 GTCCAAAAACCAAATCAGATGAATCAGGGGAGGAAAAGAAT GTCCAAAAACCAAATCAGATTAATCAGGGGAGGAAAAGAAT Direct Loss 0.935715185537164 0 NA NA prediction 0.871430371074329 Functional Loss - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154172296 chr5:154172296 stopgain 0.963 1 21 hm7G_associated_SNPs_6137 0 0 1 0 1 LARP1 chr5:154172356 5'GT 154172356 Upstream 61bp 5938 chr10 88718574 88718574 1 + G T SARC 88718574 + 88718554 88718594 41 AAGGAGGGGGTCATGTATGTGGGTAAGTGGGGCATGGCAGG AAGGAGGGGGTCATGTATGTTGGTAAGTGGGGCATGGCAGG Direct Loss 0.935705063512541 0 NA NA prediction 0.871410127025082 Functional Loss - SNCG ENSG00000173267 CDS Human protein_coding chr10:88718574 chr10:88718574 synonymous SNV . 0 21 hm7G_associated_SNPs_6139 0 0 0 0 1 SNCG chr10:88718575 5'GT 88718575 Upstream 2bp 5939 chr17 40762164 40762164 1 + G T LIHC 40762164 + 40762144 40762184 41 AACAGCTGTGCGCCGAGCATGGTATCAGCCCCGAGGGCATC AACAGCTGTGCGCCGAGCATTGTATCAGCCCCGAGGGCATC Direct Loss 0.93570227847636 0 NA NA prediction 0.87140455695272 Functional Loss - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40762164 chr17:40762164 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6140 0 0 1 0 2 TUBG1 chr17:40762126 3'AG 40762126 Downstream 39bp 5940 chr17 40762164 40762164 1 + G T LIHC 40762164 + 40762144 40762184 41 AACAGCTGTGCGCCGAGCATGGTATCAGCCCCGAGGGCATC AACAGCTGTGCGCCGAGCATTGTATCAGCCCCGAGGGCATC Direct Loss 0.93570227847636 0 NA NA prediction 0.87140455695272 Functional Loss - TUBG1 ENSG00000131462 CDS Human protein_coding chr17:40762164 chr17:40762164 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6140 0 0 1 0 2 TUBG1 chr17:40762238 5'GT 40762238 Upstream 75bp 5941 chrX 100078319 100078319 1 + G A SKCM 100078319 + 100078299 100078339 41 CTGTCATTGAGTCACCTTATGGAGAGACCATCAGTCCTGAG CTGTCATTGAGTCACCTTATAGAGAGACCATCAGTCCTGAG Direct Loss 0.935697661420341 0 NA NA prediction 0.871395322840681 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100078319 chrX:100078319 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6141 0 0 0 0 2 CSTF2 chrX:100078281 3'AG 100078281 Downstream 39bp 5942 chrX 100078319 100078319 1 + G A SKCM 100078319 + 100078299 100078339 41 CTGTCATTGAGTCACCTTATGGAGAGACCATCAGTCCTGAG CTGTCATTGAGTCACCTTATAGAGAGACCATCAGTCCTGAG Direct Loss 0.935697661420341 0 NA NA prediction 0.871395322840681 Functional Loss - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100078319 chrX:100078319 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6141 0 0 0 0 2 CSTF2 chrX:100078417 5'GT 100078417 Upstream 99bp 5943 chr15 50526115 50526115 1 + G A SKCM 50526115 + 50526095 50526135 41 TCAAAATGAAAGAAAACCATGAATTTGATGGAAAGAAACTC TCAAAATGAAAGAAAACCATAAATTTGATGGAAAGAAACTC Direct Loss 0.935695751950634 0 NA NA prediction 0.871391503901269 Functional Loss - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50526115 chr15:50526115 nonsynonymous SNV 0.452 1 21 hm7G_associated_SNPs_6143 0 0 1 0 2 SLC27A2 chr15:50526065 3'AG 50526065 Downstream 51bp 5944 chr15 50526115 50526115 1 + G A SKCM 50526115 + 50526095 50526135 41 TCAAAATGAAAGAAAACCATGAATTTGATGGAAAGAAACTC TCAAAATGAAAGAAAACCATAAATTTGATGGAAAGAAACTC Direct Loss 0.935695751950634 0 NA NA prediction 0.871391503901269 Functional Loss - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50526115 chr15:50526115 nonsynonymous SNV 0.452 1 21 hm7G_associated_SNPs_6143 0 0 1 0 2 SLC27A2 chr15:50526195 5'GT 50526195 Upstream 81bp 5945 chr2 242289532 242289532 1 + G A LIHC 242289532 + 242289512 242289552 41 GCAAGGATGCAGGCGCAGATGCAGATGCAGATGCAGGGCGG GCAAGGATGCAGGCGCAGATACAGATGCAGATGCAGGGCGG Direct Loss 0.935694191691791 0 NA NA prediction 0.871388383383583 Functional Loss - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242289532 chr2:242289532 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_6144 0 0 1 0 2 SEPT2 chr2:242289488 3'AG 242289488 Downstream 45bp 5946 chr2 242289532 242289532 1 + G A LIHC 242289532 + 242289512 242289552 41 GCAAGGATGCAGGCGCAGATGCAGATGCAGATGCAGGGCGG GCAAGGATGCAGGCGCAGATACAGATGCAGATGCAGGGCGG Direct Loss 0.935694191691791 0 NA NA prediction 0.871388383383583 Functional Loss - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242289532 chr2:242289532 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_6144 0 0 1 0 2 SEPT2 chr2:242289618 5'GT 242289618 Upstream 87bp 5947 chr17 48245335 48245335 1 + G A BLCA 48245335 + 48245315 48245355 41 CCTACAATCGGGACAGCTTTGATACCACTCGGCAGAGGCTG CCTACAATCGGGACAGCTTTAATACCACTCGGCAGAGGCTG Direct Loss 0.935693629955083 0 NA NA prediction 0.871387259910165 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245335 chr17:48245335 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_6145 0 0 0 4 2 SGCA chr17:48245308 3'AG 48245308 Downstream 28bp 5948 chr17 48245335 48245335 1 + G A BLCA 48245335 + 48245315 48245355 41 CCTACAATCGGGACAGCTTTGATACCACTCGGCAGAGGCTG CCTACAATCGGGACAGCTTTAATACCACTCGGCAGAGGCTG Direct Loss 0.935693629955083 0 NA NA prediction 0.871387259910165 Functional Loss - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245335 chr17:48245335 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_6145 0 0 0 4 2 SGCA chr17:48245380 5'GT 48245380 Upstream 46bp 5949 chr4 48037042 48037042 1 + G A SKCM 48037042 + 48037022 48037062 41 TCTTTGCATGAAATGGAAATGAAATTGAGAGACCCAGGTCT TCTTTGCATGAAATGGAAATAAAATTGAGAGACCCAGGTCT Direct Loss 0.935680223691404 0 NA NA prediction 0.871360447382807 Functional Loss - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48037042 chr4:48037042 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6146 0 0 0 0 1 NIPAL1 chr4:48037058 5'GT 48037058 Upstream 17bp 5950 chr9 100308559 100308559 1 + G T LIHC 100308559 + 100308539 100308579 41 GAGGAGCTCTTGGATCACTTGGAAAAGCAAGCAAAGGAGTT GAGGAGCTCTTGGATCACTTTGAAAAGCAAGCAAAGGAGTT Direct Loss 0.935677301590672 0 NA NA prediction 0.871354603181345 Functional Loss - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100308559 chr9:100308559 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6148 0 0 1 0 2 TMOD1 chr9:100308467 3'AG 100308467 Downstream 93bp 5951 chr9 100308559 100308559 1 + G T LIHC 100308559 + 100308539 100308579 41 GAGGAGCTCTTGGATCACTTGGAAAAGCAAGCAAAGGAGTT GAGGAGCTCTTGGATCACTTTGAAAAGCAAGCAAAGGAGTT Direct Loss 0.935677301590672 0 NA NA prediction 0.871354603181345 Functional Loss - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100308559 chr9:100308559 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6148 0 0 1 0 2 TMOD1 chr9:100308623 5'GT 100308623 Upstream 65bp 5952 chr7 100470808 100470808 1 + G A SARC 100470808 + 100470788 100470828 41 CAACAGGAGTGTGGGCTGCTGCTCTCCTCTGAGGGCGAGTG CAACAGGAGTGTGGGCTGCTACTCTCCTCTGAGGGCGAGTG Direct Loss 0.935671713900262 0 NA NA prediction 0.871343427800524 Functional Loss - TRIP6 ENSG00000087077 CDS Human protein_coding chr7:100470808 chr7:100470808 synonymous SNV . 0 21 hm7G_associated_SNPs_6149 0 0 1 0 1 TRIP6 chr7:100470794 3'AG 100470794 Downstream 15bp 5953 chr9 131455255 131455255 1 + G A STAD 131455255 + 131455235 131455275 41 CCGAAATCAAATGGAAATCTGGAAAGGTATGTTTTGAGGAA CCGAAATCAAATGGAAATCTAGAAAGGTATGTTTTGAGGAA Direct Loss 0.93567148164255 0 NA NA prediction 0.871342963285099 Functional Loss - SET ENSG00000119335 CDS Human protein_coding chr9:131455255 chr9:131455255 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6150 0 0 1 0 1 SET chr9:131455260 5'GT 131455260 Upstream 6bp 5954 chr20 2320610 2320610 1 + G A UCEC 2320610 + 2320590 2320630 41 ATGGTGGAGGGAAGCGGCCTGCTGTTGGGTAACCTGAAGAT ATGGTGGAGGGAAGCGGCCTACTGTTGGGTAACCTGAAGAT Direct Loss 0.935665485459635 0 NA NA prediction 0.871330970919271 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2320610 chr20:2320610 synonymous SNV . 0 21 hm7G_associated_SNPs_6152 0 0 0 0 1 TGM3 chr20:2320633 5'GT 2320633 Upstream 24bp 5955 chr20 30072038 30072038 1 + G A rs574634636 30072038 + 30072018 30072058 41 CTGCAGCACAATGTGGCCGAGCTCTTCGAGGGCGTGGTGCG CTGCAGCACAATGTGGCCGAACTCTTCGAGGGCGTGGTGCG Direct Loss 0.935660462844624 0 NA NA prediction 0.871320925689247 Functional Loss - REM1 ENSG00000088320 CDS Human protein_coding chr20:30072038 chr20:30072038 synonymous SNV . 0 21 hm7G_associated_SNPs_6153 0 0 0 0 1 REM1 chr20:30071962 3'AG 30071962 Downstream 77bp 5956 chr19 55855211 55855211 1 + G A CESC 55855211 + 55855191 55855231 41 CAGCCGCCTTCATCAACCATGGTGAGGGTCAGGCAGGTGGA CAGCCGCCTTCATCAACCATAGTGAGGGTCAGGCAGGTGGA Direct Loss 0.93565912969741 0 NA NA prediction 0.87131825939482 Functional Loss - KMT5C ENSG00000133247 CDS Human protein_coding chr19:55855211 chr19:55855211 nonsynonymous SNV 0.959 5 21 hm7G_associated_SNPs_6154 0 0 1 0 1 KMT5C chr19:55855211 5'GT 55855211 Upstream 1bp 5957 chr8 120430393 120430393 1 + G T THCA 120430393 + 120430373 120430413 41 TCCAGTGCACCTGCAGAGATGGGCAGATTGGCTGTGTGCCC TCCAGTGCACCTGCAGAGATTGGCAGATTGGCTGTGTGCCC Direct Loss 0.935658034721553 0 NA NA prediction 0.871316069443106 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120430393 chr8:120430393 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6155 0 0 0 0 1 NOV chr8:120430298 3'AG 120430298 Downstream 96bp 5958 chr4 48384683 48384683 1 + G T GBM 48384683 + 48384663 48384703 41 TTAGTGATCAGGAACTTGATGCACAAAGTTTAGATGATGAA TTAGTGATCAGGAACTTGATTCACAAAGTTTAGATGATGAA Direct Loss 0.935654079260081 0 NA NA prediction 0.871308158520163 Functional Loss - SLAIN2 ENSG00000109171 CDS Human protein_coding chr4:48384683 chr4:48384683 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_6156 0 0 1 0 1 SLAIN2 chr4:48384585 3'AG 48384585 Downstream 99bp 5959 chr17 38449864 38449864 1 + G A UCEC 38449864 + 38449844 38449884 41 AATTGGAAAAACATATGACTGCAGAGAAGGGCCCCATGATG AATTGGAAAAACATATGACTACAGAGAAGGGCCCCATGATG Direct Loss 0.935652767942267 0 NA NA prediction 0.871305535884534 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38449864 chr17:38449864 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6157 0 0 1 0 1 CDC6 chr17:38449883 5'GT 38449883 Upstream 20bp 5960 chrX 135574142 135574142 1 + G T LUAD 135574142 + 135574122 135574162 41 TTGAATCCCGAAAGAGAATTGCCAGAACGGTATTGGTGTTG TTGAATCCCGAAAGAGAATTTCCAGAACGGTATTGGTGTTG Direct Loss 0.935646112806799 0 NA NA prediction 0.871292225613598 Functional Loss - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135574142 chrX:135574142 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6158 0 0 0 0 1 BRS3 chrX:135574121 3'AG 135574121 Downstream 22bp 5961 chr12 549890 549890 1 + G A BLCA 549890 + 549870 549910 41 ATTCGTGAGGAAGAGGGAATGAGGAGAGAGATCTTCAAGGT ATTCGTGAGGAAGAGGGAATAAGGAGAGAGATCTTCAAGGT Direct Loss 0.935626238723294 0 NA NA prediction 0.871252477446589 Functional Loss - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:549890 chr12:549890 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_6160 0 0 1 0 1 CCDC77 chr12:549908 5'GT 549908 Upstream 19bp 5962 chr2 192550348 192550348 1 + G A UCEC 192550348 + 192550328 192550368 41 ATGGTGTTCACACTGGCCCTGAATCAAGGGAACACCAGTTT ATGGTGTTCACACTGGCCCTAAATCAAGGGAACACCAGTTT Direct Loss 0.935615452229482 0 NA NA prediction 0.871230904458964 Functional Loss - NABP1 ENSG00000173559 CDS Human protein_coding chr2:192550348 chr2:192550348 nonsynonymous SNV 0.893 0 21 hm7G_associated_SNPs_6161 0 0 1 0 1 NABP1 chr2:192550325 3'AG 192550325 Downstream 24bp 5963 chr3 122044200 122044200 1 + G A BLCA 122044200 + 122044180 122044220 41 CAGAAATCCAGGAGATTGTTGATAAGGTGAGTTGATGCCAT CAGAAATCCAGGAGATTGTTAATAAGGTGAGTTGATGCCAT Direct Loss 0.935608721840304 0 NA NA prediction 0.871217443680607 Functional Loss - CSTA ENSG00000121552 CDS Human protein_coding chr3:122044200 chr3:122044200 nonsynonymous SNV 0.180 0 21 hm7G_associated_SNPs_6162 0 0 0 0 1 CSTA chr3:122044205 5'GT 122044205 Upstream 6bp 5964 chr19 41281508 41281508 1 + G A BLCA 41281508 + 41281488 41281528 41 TGTCTGCCTTCTCCGGACCTGGTGTCAGGGGTGGTCCTATG TGTCTGCCTTCTCCGGACCTAGTGTCAGGGGTGGTCCTATG Direct Loss 0.935605133091242 0 NA NA prediction 0.871210266182485 Functional Loss - MIA ENSG00000261857;ENSG00000268975 CDS Human other chr19:41281508 chr19:41281508 nonsynonymous SNV 0.004 0 21 hm7G_associated_SNPs_6164 0 0 0 0 1 MIA chr19:41281574 5'GT 41281574 Upstream 67bp 5965 chr16 69352557 69352557 1 + G A BLCA 69352557 + 69352537 69352577 41 CCGTCTCCCTTCCCAGCAGTGACAGTGACAGTGAAGGGGAT CCGTCTCCCTTCCCAGCAGTAACAGTGACAGTGAAGGGGAT Direct Loss 0.935601755138211 0 NA NA prediction 0.871203510276421 Functional Loss - VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69352557 chr16:69352557 nonsynonymous SNV 0.946 2 21 hm7G_associated_SNPs_6165 0 0 1 0 2 VPS4A chr16:69352553 3'AG 69352553 Downstream 5bp 5966 chr16 69352557 69352557 1 + G A BLCA 69352557 + 69352537 69352577 41 CCGTCTCCCTTCCCAGCAGTGACAGTGACAGTGAAGGGGAT CCGTCTCCCTTCCCAGCAGTAACAGTGACAGTGAAGGGGAT Direct Loss 0.935601755138211 0 NA NA prediction 0.871203510276421 Functional Loss - VPS4A ENSG00000132612;ENSG00000260914 CDS Human other chr16:69352557 chr16:69352557 nonsynonymous SNV 0.946 2 21 hm7G_associated_SNPs_6165 0 0 1 0 2 VPS4A chr16:69352614 5'GT 69352614 Upstream 58bp 5967 chr1 10477108 10477108 1 + G C LUAD 10477108 + 10477088 10477128 41 AGAATTCAAGCTAGCAAAAAGCTGAAGGGTCCCCAGAAGTT AGAATTCAAGCTAGCAAAAACCTGAAGGGTCCCCAGAAGTT Direct Loss 0.93559905098911 0 NA NA prediction 0.871198101978219 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10477108 chr1:10477108 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_6166 0 0 1 0 2 PGD chr1:10477044 3'AG 10477044 Downstream 65bp 5968 chr1 10477108 10477108 1 + G C LUAD 10477108 + 10477088 10477128 41 AGAATTCAAGCTAGCAAAAAGCTGAAGGGTCCCCAGAAGTT AGAATTCAAGCTAGCAAAAACCTGAAGGGTCCCCAGAAGTT Direct Loss 0.93559905098911 0 NA NA prediction 0.871198101978219 Functional Loss - PGD ENSG00000142657 CDS Human protein_coding chr1:10477108 chr1:10477108 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_6166 0 0 1 0 2 PGD chr1:10477174 5'GT 10477174 Upstream 67bp 5969 chr16 56485645 56485645 1 + G A HNSC 56485645 + 56485625 56485665 41 CCTTGAAAAAGCAGGTGGCTGAGGCCTGGAGCCGCAGGACG CCTTGAAAAAGCAGGTGGCTAAGGCCTGGAGCCGCAGGACG Direct Loss 0.935598387977332 0 NA NA prediction 0.871196775954664 Functional Loss - OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56485645 chr16:56485645 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_6167 0 0 1 0 1 OGFOD1 chr16:56485678 5'GT 56485678 Upstream 34bp 5970 chr13 77657221 77657221 1 + G A LUSC 77657221 + 77657201 77657241 41 GGAGAGACATCATAAGGTCTGAGATGGTCTGCAGCAAGCGG GGAGAGACATCATAAGGTCTAAGATGGTCTGCAGCAAGCGG Direct Loss 0.93559593839975 0 NA NA prediction 0.8711918767995 Functional Loss - MYCBP2 ENSG00000005810 CDS Human processed_transcript chr13:77657221 chr13:77657221 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_6168 0 0 0 0 2 MYCBP2-AS1 chr13:77657145 3'AG 77657145 Downstream 77bp 5971 chr13 77657221 77657221 1 + G A LUSC 77657221 + 77657201 77657241 41 GGAGAGACATCATAAGGTCTGAGATGGTCTGCAGCAAGCGG GGAGAGACATCATAAGGTCTAAGATGGTCTGCAGCAAGCGG Direct Loss 0.93559593839975 0 NA NA prediction 0.8711918767995 Functional Loss - MYCBP2 ENSG00000005810 CDS Human protein_coding chr13:77657221 chr13:77657221 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_6168 0 0 0 0 2 MYCBP2 chr13:77657247 5'GT 77657247 Upstream 27bp 5972 chr12 56553877 56553877 1 + G A COAD 56553877 + 56553857 56553897 41 GGACTTCGGGTGTTTGACAAGGAAGGAAATGGCACCGTCAT GGACTTCGGGTGTTTGACAAAGAAGGAAATGGCACCGTCAT Direct Loss 0.9355886018859 0 NA NA prediction 0.871177203771799 Functional Loss - MYL6 ENSG00000092841 CDS Human protein_coding chr12:56553877 chr12:56553877 synonymous SNV . 0 21 hm7G_associated_SNPs_6171 0 0 1 0 1 MYL6 chr12:56553932 5'GT 56553932 Upstream 56bp 5973 chr20 43945416 43945416 1 + G A BLCA 43945416 + 43945396 43945436 41 GCTCCCATCACAATCCCCATGAGCCTGGTGCGCGCCGACGG GCTCCCATCACAATCCCCATAAGCCTGGTGCGCGCCGACGG Direct Loss 0.935582936986459 0 NA NA prediction 0.871165873972919 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43945416 chr20:43945416 nonsynonymous SNV 0.872 0 21 hm7G_associated_SNPs_6172 0 0 0 0 1 RBPJL chr20:43945326 3'AG 43945326 Downstream 91bp 5974 chr6 111213629 111213629 1 + G C STAD 111213629 + 111213609 111213649 41 ACATGAAAGATGGTGTTACTGCAAAGGATGTCACTCGTGTA ACATGAAAGATGGTGTTACTCCAAAGGATGTCACTCGTGTA Direct Loss 0.93556972207706 0 NA NA prediction 0.87113944415412 Functional Loss - AMD1 ENSG00000123505 CDS Human protein_coding chr6:111213629 chr6:111213629 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6176 0 0 1 0 1 AMD1 chr6:111213646 5'GT 111213646 Upstream 18bp 5975 chr11 61506988 61506988 1 + G C LUSC 61506988 + 61506968 61507008 41 TCCCCAAGTCGGAGCTGCCTGAGGAGGTAGAGGTGACCACC TCCCCAAGTCGGAGCTGCCTCAGGAGGTAGAGGTGACCACC Direct Loss 0.935569228799193 0 NA NA prediction 0.871138457598386 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61506988 chr11:61506988 nonsynonymous SNV 0.992 0 21 hm7G_associated_SNPs_6177 0 0 0 0 1 DAGLA chr11:61506937 3'AG 61506937 Downstream 52bp 5976 chr1 78399088 78399088 1 + G A SKCM 78399088 + 78399068 78399108 41 AATGGAAGAAGAAAAACGACGAACAGAGGAGGAACGGAAGC AATGGAAGAAGAAAAACGACAAACAGAGGAGGAACGGAAGC Direct Loss 0.935556460815926 0 NA NA prediction 0.871112921631851 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78399088 chr1:78399088 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6179 0 0 0 0 1 NEXN chr1:78399164 5'GT 78399164 Upstream 77bp 5977 chr11 105948560 105948560 1 + G T SARC 105948560 + 105948540 105948580 41 CTGGCAGTGCGATCGATTCAGCCCGAGGAGAAGGAGCGCAT CTGGCAGTGCGATCGATTCATCCCGAGGAGAAGGAGCGCAT Direct Loss 0.935554346883661 0 NA NA prediction 0.871108693767323 Functional Loss - AASDHPPT ENSG00000149313 CDS Human protein_coding chr11:105948560 chr11:105948560 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6180 0 0 1 0 1 AASDHPPT chr11:105948620 5'GT 105948620 Upstream 61bp 5978 chr19 36362811 36362811 1 + G A BLCA 36362811 + 36362791 36362831 41 AGCAGAGTAGAGGGGGCTGAGGACGAGGAAGAGGAGGAATC AGCAGAGTAGAGGGGGCTGAAGACGAGGAAGAGGAGGAATC Direct Loss 0.935542522146935 0 NA NA prediction 0.87108504429387 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36362811 chr19:36362811 synonymous SNV . 0 21 hm7G_associated_SNPs_6182 0 0 0 0 1 APLP1 chr19:36362760 3'AG 36362760 Downstream 52bp 5979 chr1 92528676 92528676 1 + G A COAD 92528676 + 92528656 92528696 41 TACTGTGGGGAGAGAATGACGCATTCATGGAGGTTGAGATG TACTGTGGGGAGAGAATGACACATTCATGGAGGTTGAGATG Direct Loss 0.935540610588309 0 NA NA prediction 0.871081221176619 Functional Loss - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92528676 chr1:92528676 nonsynonymous SNV 0.984 1 21 hm7G_associated_SNPs_6183 0 0 0 0 1 EPHX4 chr1:92528612 3'AG 92528612 Downstream 65bp 5980 chr10 102239703 102239703 1 + G T HNSC 102239703 + 102239683 102239723 41 AAGAATGCAAGTATCAGTTTGCCTGGGACCGCTGGAACTGC AAGAATGCAAGTATCAGTTTTCCTGGGACCGCTGGAACTGC Direct Loss 0.935532829340402 0 NA NA prediction 0.871065658680804 Functional Loss - WNT8B ENSG00000075290 CDS Human protein_coding chr10:102239703 chr10:102239703 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6184 0 0 0 0 2 WNT8B chr10:102239631 3'AG 102239631 Downstream 73bp 5981 chr10 102239703 102239703 1 + G T HNSC 102239703 + 102239683 102239723 41 AAGAATGCAAGTATCAGTTTGCCTGGGACCGCTGGAACTGC AAGAATGCAAGTATCAGTTTTCCTGGGACCGCTGGAACTGC Direct Loss 0.935532829340402 0 NA NA prediction 0.871065658680804 Functional Loss - WNT8B ENSG00000075290 CDS Human protein_coding chr10:102239703 chr10:102239703 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6184 0 0 0 0 2 WNT8B chr10:102239769 5'GT 102239769 Upstream 67bp 5982 chr16 105530 105530 1 + G C LUSC 105530 + 105510 105550 41 ATGACGGTCCGAGTGTGCAAGATGGATGGAGAAGTAATGCG ATGACGGTCCGAGTGTGCAACATGGATGGAGAAGTAATGCG Direct Loss 0.93552829126623 0 NA NA prediction 0.87105658253246 Functional Loss - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:105530 chr16:105530 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6187 0 0 1 0 2 SNRNP25 chr16:105459 3'AG 105459 Downstream 72bp 5983 chr16 105530 105530 1 + G C LUSC 105530 + 105510 105550 41 ATGACGGTCCGAGTGTGCAAGATGGATGGAGAAGTAATGCG ATGACGGTCCGAGTGTGCAACATGGATGGAGAAGTAATGCG Direct Loss 0.93552829126623 0 NA NA prediction 0.87105658253246 Functional Loss - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:105530 chr16:105530 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6187 0 0 1 0 2 SNRNP25 chr16:105549 5'GT 105549 Upstream 20bp 5984 chr17 26499597 26499597 1 + G T SARC 26499597 + 26499577 26499617 41 CACTGGAAGCAATGAGGACAGCTTGTGAAGGCGCTAAGGCA CACTGGAAGCAATGAGGACATCTTGTGAAGGCGCTAAGGCA Direct Loss 0.935522729913083 0 NA NA prediction 0.871045459826166 Functional Loss - NLK ENSG00000087095 CDS Human protein_coding chr17:26499597 chr17:26499597 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6189 0 0 1 0 2 NLK chr17:26499543 3'AG 26499543 Downstream 55bp 5985 chr17 26499597 26499597 1 + G T SARC 26499597 + 26499577 26499617 41 CACTGGAAGCAATGAGGACAGCTTGTGAAGGCGCTAAGGCA CACTGGAAGCAATGAGGACATCTTGTGAAGGCGCTAAGGCA Direct Loss 0.935522729913083 0 NA NA prediction 0.871045459826166 Functional Loss - NLK ENSG00000087095 CDS Human protein_coding chr17:26499597 chr17:26499597 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6189 0 0 1 0 2 NLK chr17:26499644 5'GT 26499644 Upstream 48bp 5986 chr12 57972098 57972098 1 + G A STAD 57972098 + 57972078 57972118 41 TCCTTTCTTGAGAACAACCTGGAACAGCTTACAAAGGTTCA TCCTTTCTTGAGAACAACCTAGAACAGCTTACAAAGGTTCA Direct Loss 0.935510103226398 0 NA NA prediction 0.871020206452797 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57972098 chr12:57972098 synonymous SNV . 0 21 hm7G_associated_SNPs_6192 0 0 1 0 1 KIF5A chr12:57972125 5'GT 57972125 Upstream 28bp 5987 chr18 43704823 43704823 1 + G A CESC 43704823 + 43704803 43704843 41 AAGCAACAGACTATACCTTTGAAGAAAAAATTGGAGTCCTA AAGCAACAGACTATACCTTTAAAGAAAAAATTGGAGTCCTA Direct Loss 0.935500258745696 0 NA NA prediction 0.871000517491393 Functional Loss - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43704823 chr18:43704823 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_6193 0 0 1 0 2 HAUS1 chr18:43704788 3'AG 43704788 Downstream 36bp 5988 chr18 43704823 43704823 1 + G A CESC 43704823 + 43704803 43704843 41 AAGCAACAGACTATACCTTTGAAGAAAAAATTGGAGTCCTA AAGCAACAGACTATACCTTTAAAGAAAAAATTGGAGTCCTA Direct Loss 0.935500258745696 0 NA NA prediction 0.871000517491393 Functional Loss - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43704823 chr18:43704823 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_6193 0 0 1 0 2 HAUS1 chr18:43704859 5'GT 43704859 Upstream 37bp 5989 chr7 139094358 139094358 1 + G A UCEC 139094358 + 139094338 139094378 41 AAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGAG AAACCAGGAACGGCTGAAACAAAGAGAAGAGAGAGAGAGAG Direct Loss 0.935497251963911 0 NA NA prediction 0.870994503927823 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094358 chr7:139094358 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6196 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 50bp 5990 chr7 139094358 139094358 1 + G A UCEC 139094358 + 139094338 139094378 41 AAACCAGGAACGGCTGAAACGAAGAGAAGAGAGAGAGAGAG AAACCAGGAACGGCTGAAACAAAGAGAAGAGAGAGAGAGAG Direct Loss 0.935497251963911 0 NA NA prediction 0.870994503927823 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094358 chr7:139094358 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6196 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 43bp 5991 chr10 94834616 94834616 1 + G A UCEC 94834616 + 94834596 94834636 41 GAAGTGGGCAGCAGCCTGGAGCAGTGGCTGAGCTGCGGCGA GAAGTGGGCAGCAGCCTGGAACAGTGGCTGAGCTGCGGCGA Direct Loss 0.935486526369409 0 NA NA prediction 0.870973052738818 Functional Loss - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94834616 chr10:94834616 synonymous SNV . 0 21 hm7G_associated_SNPs_6197 0 0 0 0 1 CYP26A1 chr10:94834536 3'AG 94834536 Downstream 81bp 5992 chr17 7557218 7557218 1 + G A BLCA 7557218 + 7557198 7557238 41 TTGTCAATGTCAGTGACACTGAAAGCTGGGACCAGCATGTT TTGTCAATGTCAGTGACACTAAAAGCTGGGACCAGCATGTT Direct Loss 0.935476840722584 0 NA NA prediction 0.870953681445169 Functional Loss - ATP1B2 ENSG00000129244 CDS Human protein_coding chr17:7557218 chr17:7557218 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6199 0 0 0 0 1 ATP1B2 chr17:7557159 3'AG 7557159 Downstream 60bp 5993 chr2 162081195 162081195 1 + G A STAD 162081195 + 162081175 162081215 41 AGAAGAATTTCATAAAATATGCATGCTAGCAAAAGCACAGA AGAAGAATTTCATAAAATATACATGCTAGCAAAAGCACAGA Direct Loss 0.935472068018349 0 NA NA prediction 0.870944136036699 Functional Loss - TANK ENSG00000136560 CDS Human protein_coding chr2:162081195 chr2:162081195 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_6200 0 0 1 0 2 TANK chr2:162081142 3'AG 162081142 Downstream 54bp 5994 chr2 162081195 162081195 1 + G A STAD 162081195 + 162081175 162081215 41 AGAAGAATTTCATAAAATATGCATGCTAGCAAAAGCACAGA AGAAGAATTTCATAAAATATACATGCTAGCAAAAGCACAGA Direct Loss 0.935472068018349 0 NA NA prediction 0.870944136036699 Functional Loss - TANK ENSG00000136560 CDS Human protein_coding chr2:162081195 chr2:162081195 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_6200 0 0 1 0 2 TANK chr2:162081257 5'GT 162081257 Upstream 63bp 5995 chr10 17277195 17277195 1 + G T UCEC 17277195 + 17277175 17277215 41 CCCTGGAACGCCAGATGCGTGAAATGGAAGAGAACTTTGCC CCCTGGAACGCCAGATGCGTTAAATGGAAGAGAACTTTGCC Direct Loss 0.93546632436142 0 NA NA prediction 0.870932648722839 Functional Loss - VIM ENSG00000026025 CDS Human protein_coding chr10:17277195 chr10:17277195 stopgain 1.000 1 21 hm7G_associated_SNPs_6202 0 0 1 0 1 VIM chr10:17277168 3'AG 17277168 Downstream 28bp 5996 chr16 461494 461494 1 + G C BRCA 461494 + 461474 461514 41 TACGTGACGGGGGCCGTGCTGGTGGCCGATGGCGGGGCATG TACGTGACGGGGGCCGTGCTCGTGGCCGATGGCGGGGCATG Direct Loss 0.935463821846979 0 NA NA prediction 0.870927643693958 Functional Loss - DECR2 ENSG00000242612 CDS Human protein_coding chr16:461494 chr16:461494 synonymous SNV . 0 21 hm7G_associated_SNPs_6203 0 0 1 0 1 DECR2 chr16:461578 5'GT 461578 Upstream 85bp 5997 chr15 44852520 44852520 1 + G T UCEC 44852520 + 44852500 44852540 41 GAAAAACAGAAGCAAGAAAAGGTAAGAGCAAGCTGTGTAGG GAAAAACAGAAGCAAGAAAATGTAAGAGCAAGCTGTGTAGG Direct Loss 0.935454682213616 0 NA NA prediction 0.870909364427233 Functional Loss - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44852520 chr15:44852520 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6205 0 0 0 0 2 EIF3J chr15:44852447 3'AG 44852447 Downstream 74bp 5998 chr15 44852520 44852520 1 + G T UCEC 44852520 + 44852500 44852540 41 GAAAAACAGAAGCAAGAAAAGGTAAGAGCAAGCTGTGTAGG GAAAAACAGAAGCAAGAAAATGTAAGAGCAAGCTGTGTAGG Direct Loss 0.935454682213616 0 NA NA prediction 0.870909364427233 Functional Loss - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44852520 chr15:44852520 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6205 0 0 0 0 2 EIF3J chr15:44852520 5'GT 44852520 Upstream 1bp 5999 chr22 21350282 21350282 1 + G A UCEC 21350282 + 21350262 21350302 41 GCCATGTTCCGGTCCTTCATGCCCGAAGATGGGCAGGTGAA GCCATGTTCCGGTCCTTCATACCCGAAGATGGGCAGGTGAA Direct Loss 0.935453034461653 0 NA NA prediction 0.870906068923306 Functional Loss - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21350282 chr22:21350282 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_6206 0 0 1 0 1 LZTR1 chr22:21350252 3'AG 21350252 Downstream 31bp 6000 chr4 26432370 26432370 1 + G T STAD 26432370 + 26432350 26432390 41 TTCTGCATTCCGAGAAGGTTGGAGATGGGTCCGGCAACCAG TTCTGCATTCCGAGAAGGTTTGAGATGGGTCCGGCAACCAG Direct Loss 0.935432514645535 0 NA NA prediction 0.870865029291069 Functional Loss - RBPJ ENSG00000168214 CDS Human protein_coding chr4:26432370 chr4:26432370 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6211 0 0 1 0 1 RBPJ chr4:26432314 3'AG 26432314 Downstream 57bp 6001 chr3 148586712 148586712 1 + G A LUSC 148586712 + 148586692 148586732 41 ATCTCTGCAGCTTGACTTCTGGTATCCAGGTGCCACCCACC ATCTCTGCAGCTTGACTTCTAGTATCCAGGTGCCACCCACC Direct Loss 0.935428754030876 0 NA NA prediction 0.870857508061753 Functional Loss - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148586712 chr3:148586712 stopgain 0.995 1 21 hm7G_associated_SNPs_6212 0 0 0 0 1 CPA3 chr3:148586702 3'AG 148586702 Downstream 11bp 6002 chrX 595387 595387 1 + G A SKCM 595387 + 595367 595407 41 AAAGAGAAGCGCGAGGACGTGAAGTCGGAGGACGAGGACGG AAAGAGAAGCGCGAGGACGTAAAGTCGGAGGACGAGGACGG Direct Loss 0.935427447789623 0 NA NA prediction 0.870854895579247 Functional Loss - SHOX ENSG00000185960 CDS Human protein_coding chrX:595387 chrX:595387 synonymous SNV . 0 21 hm7G_associated_SNPs_6213 0 0 0 0 1 SHOX chrX:595353 3'AG 595353 Downstream 35bp 6003 chr7 128850231 128850231 1 + G A STAD 128850231 + 128850211 128850251 41 GCCAATGTGACCATCGGGCTGCCCACCAAGCAGCCCATCCC GCCAATGTGACCATCGGGCTACCCACCAAGCAGCCCATCCC Direct Loss 0.935426749910952 0 NA NA prediction 0.870853499821903 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128850231 chr7:128850231 synonymous SNV . 0 21 hm7G_associated_SNPs_6214 0 0 1 0 1 SMO chr7:128850204 3'AG 128850204 Downstream 28bp 6004 chr6 100056667 100056667 1 + G T LUAD 100056667 + 100056647 100056687 41 GAGTCGGGGGGCTCCCCTCTGGAGTGGATAGGGTTAATCCG GAGTCGGGGGGCTCCCCTCTTGAGTGGATAGGGTTAATCCG Direct Loss 0.93542113473976 0 NA NA prediction 0.870842269479521 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056667 chr6:100056667 stopgain . 0 21 hm7G_associated_SNPs_6216 0 0 0 0 2 PRDM13 chr6:100056617 3'AG 100056617 Downstream 51bp 6005 chr6 100056667 100056667 1 + G T LUAD 100056667 + 100056647 100056687 41 GAGTCGGGGGGCTCCCCTCTGGAGTGGATAGGGTTAATCCG GAGTCGGGGGGCTCCCCTCTTGAGTGGATAGGGTTAATCCG Direct Loss 0.93542113473976 0 NA NA prediction 0.870842269479521 Functional Loss - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056667 chr6:100056667 stopgain . 0 21 hm7G_associated_SNPs_6216 0 0 0 0 2 PRDM13 chr6:100056748 5'GT 100056748 Upstream 82bp 6006 chr2 108998259 108998259 1 + G A SKCM 108998259 + 108998239 108998279 41 TAGTGGAATTAATACAAAATGAAGGTGATGTGGAGAAAAGT TAGTGGAATTAATACAAAATAAAGGTGATGTGGAGAAAAGT Direct Loss 0.935416648024964 0 NA NA prediction 0.870833296049928 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108998259 chr2:108998259 nonsynonymous SNV 0.463 0 21 hm7G_associated_SNPs_6217 0 0 1 1 2 SULT1C4 chr2:108998218 3'AG 108998218 Downstream 42bp 6007 chr2 108998259 108998259 1 + G A SKCM 108998259 + 108998239 108998279 41 TAGTGGAATTAATACAAAATGAAGGTGATGTGGAGAAAAGT TAGTGGAATTAATACAAAATAAAGGTGATGTGGAGAAAAGT Direct Loss 0.935416648024964 0 NA NA prediction 0.870833296049928 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108998259 chr2:108998259 nonsynonymous SNV 0.463 0 21 hm7G_associated_SNPs_6217 0 0 1 1 2 SULT1C4 chr2:108998343 5'GT 108998343 Upstream 85bp 6008 chr11 64108099 64108099 1 + G A COAD 64108099 + 64108079 64108119 41 GCGCTGGGACTGGCCGGGCTGGTCGGGGAGGCGGAGGACTC GCGCTGGGACTGGCCGGGCTAGTCGGGGAGGCGGAGGACTC Direct Loss 0.935406584311249 0 NA NA prediction 0.870813168622498 Functional Loss - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64108099 chr11:64108099 synonymous SNV . 0 21 hm7G_associated_SNPs_6219 0 0 0 0 1 CCDC88B chr11:64108079 3'AG 64108079 Downstream 21bp 6009 chr11 1955588 1955588 1 + G A SKCM 1955588 + 1955568 1955608 41 AAGGCCAGAAGGGAGGAGGAGGATGCCAAGAGGAGGGCAGA AAGGCCAGAAGGGAGGAGGAAGATGCCAAGAGGAGGGCAGA Direct Loss 0.935403500769412 0 NA NA prediction 0.870807001538825 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955588 chr11:1955588 synonymous SNV . 0 21 hm7G_associated_SNPs_6220 0 0 0 0 2 TNNT3 chr11:1955562 3'AG 1955562 Downstream 27bp 6010 chr11 1955588 1955588 1 + G A SKCM 1955588 + 1955568 1955608 41 AAGGCCAGAAGGGAGGAGGAGGATGCCAAGAGGAGGGCAGA AAGGCCAGAAGGGAGGAGGAAGATGCCAAGAGGAGGGCAGA Direct Loss 0.935403500769412 0 NA NA prediction 0.870807001538825 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955588 chr11:1955588 synonymous SNV . 0 21 hm7G_associated_SNPs_6220 0 0 0 0 2 TNNT3 chr11:1955675 5'GT 1955675 Upstream 88bp 6011 chr19 35769607 35769607 1 + G A BLCA 35769607 + 35769587 35769627 41 TCTGTTTTCCGCAGTGGAGCGGAGGCGGAGGGACAAGATCA TCTGTTTTCCGCAGTGGAGCAGAGGCGGAGGGACAAGATCA Direct Loss 0.935401354271162 0 NA NA prediction 0.870802708542324 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769607 chr19:35769607 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_6221 0 0 1 0 2 USF2 chr19:35769601 3'AG 35769601 Downstream 7bp 6012 chr19 35769607 35769607 1 + G A BLCA 35769607 + 35769587 35769627 41 TCTGTTTTCCGCAGTGGAGCGGAGGCGGAGGGACAAGATCA TCTGTTTTCCGCAGTGGAGCAGAGGCGGAGGGACAAGATCA Direct Loss 0.935401354271162 0 NA NA prediction 0.870802708542324 Functional Loss - USF2 ENSG00000105698 CDS Human protein_coding chr19:35769607 chr19:35769607 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_6221 0 0 1 0 2 USF2 chr19:35769695 5'GT 35769695 Upstream 89bp 6013 chr1 151664974 151664974 1 + G C CESC 151664974 + 151664954 151664994 41 TCTTTCCCCACTGTGCCTGTGACTCCAGGAGGAAGGGGCAC TCTTTCCCCACTGTGCCTGTCACTCCAGGAGGAAGGGGCAC Direct Loss 0.935393632852892 0 NA NA prediction 0.870787265705783 Functional Loss - SNX27 ENSG00000143376 CDS Human protein_coding chr1:151664974 chr1:151664974 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_6222 0 0 1 0 2 SNX27 chr1:151664911 3'AG 151664911 Downstream 64bp 6014 chr1 151664974 151664974 1 + G C CESC 151664974 + 151664954 151664994 41 TCTTTCCCCACTGTGCCTGTGACTCCAGGAGGAAGGGGCAC TCTTTCCCCACTGTGCCTGTCACTCCAGGAGGAAGGGGCAC Direct Loss 0.935393632852892 0 NA NA prediction 0.870787265705783 Functional Loss - SNX27 ENSG00000143376 CDS Human protein_coding chr1:151664974 chr1:151664974 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_6222 0 0 1 0 2 SNX27 chr1:151665060 5'GT 151665060 Upstream 87bp 6015 chr16 31234232 31234232 1 + G A SKCM 31234232 + 31234212 31234252 41 TCAGATGACTTCAAATTCCAGGTGTGGAGGAAGATGTTCCG TCAGATGACTTCAAATTCCAAGTGTGGAGGAAGATGTTCCG Direct Loss 0.935387698174384 0 NA NA prediction 0.870775396348767 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31234232 chr16:31234232 synonymous SNV . 0 21 hm7G_associated_SNPs_6223 0 0 1 0 2 TRIM72 chr16:31234148 3'AG 31234148 Downstream 85bp 6016 chr16 31234232 31234232 1 + G A SKCM 31234232 + 31234212 31234252 41 TCAGATGACTTCAAATTCCAGGTGTGGAGGAAGATGTTCCG TCAGATGACTTCAAATTCCAAGTGTGGAGGAAGATGTTCCG Direct Loss 0.935387698174384 0 NA NA prediction 0.870775396348767 Functional Loss - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31234232 chr16:31234232 synonymous SNV . 0 21 hm7G_associated_SNPs_6223 0 0 1 0 2 TRIM72 chr16:31234266 5'GT 31234266 Upstream 35bp 6017 chr10 70100988 70100988 1 + G A COAD 70100988 + 70100968 70101008 41 ATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTA ATATTGGAGCTGATGGCAGAACCACAGGAGAAGCAGATGTA Direct Loss 0.935382012478682 0 NA NA prediction 0.870764024957365 Functional Loss - HNRNPH3 ENSG00000096746;ENSG00000204130 CDS Human other chr10:70100988 chr10:70100988 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6225 0 0 1 0 2 HNRNPH3 chr10:70100931 3'AG 70100931 Downstream 58bp 6018 chr10 70100988 70100988 1 + G A COAD 70100988 + 70100968 70101008 41 ATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTA ATATTGGAGCTGATGGCAGAACCACAGGAGAAGCAGATGTA Direct Loss 0.935382012478682 0 NA NA prediction 0.870764024957365 Functional Loss - HNRNPH3 ENSG00000096746;ENSG00000204130 CDS Human protein_coding chr10:70100988 chr10:70100988 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6225 0 0 1 0 2 HNRNPH3 chr10:70101066 5'GT 70101066 Upstream 79bp 6019 chr7 73522245 73522245 1 + G C GBM 73522245 + 73522225 73522265 41 GTGATGGTGATGAAGGAGCTGATCCGGTTCGACGAGGAGAC GTGATGGTGATGAAGGAGCTCATCCGGTTCGACGAGGAGAC Direct Loss 0.935367703344885 0 NA NA prediction 0.87073540668977 Functional Loss - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73522245 chr7:73522245 synonymous SNV . 0 21 hm7G_associated_SNPs_6228 0 0 1 0 2 LIMK1 chr7:73522201 3'AG 73522201 Downstream 45bp 6020 chr7 73522245 73522245 1 + G C GBM 73522245 + 73522225 73522265 41 GTGATGGTGATGAAGGAGCTGATCCGGTTCGACGAGGAGAC GTGATGGTGATGAAGGAGCTCATCCGGTTCGACGAGGAGAC Direct Loss 0.935367703344885 0 NA NA prediction 0.87073540668977 Functional Loss - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73522245 chr7:73522245 synonymous SNV . 0 21 hm7G_associated_SNPs_6228 0 0 1 0 2 LIMK1 chr7:73522287 5'GT 73522287 Upstream 43bp 6021 chr2 3405596 3405596 1 + G T LUAD 3405596 + 3405576 3405616 41 GCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTA GCTTTCTGGGTGAAAAAGCTTCAGCAAAGAGACAAGTCCTA Direct Loss 0.935366421397019 0 NA NA prediction 0.870732842794038 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3405596 chr2:3405596 nonsynonymous SNV 0.738 2 21 hm7G_associated_SNPs_6229 0 0 0 0 2 TRAPPC12 chr2:3405548 3'AG 3405548 Downstream 49bp 6022 chr2 3405596 3405596 1 + G T LUAD 3405596 + 3405576 3405616 41 GCTTTCTGGGTGAAAAAGCTGCAGCAAAGAGACAAGTCCTA GCTTTCTGGGTGAAAAAGCTTCAGCAAAGAGACAAGTCCTA Direct Loss 0.935366421397019 0 NA NA prediction 0.870732842794038 Functional Loss - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3405596 chr2:3405596 nonsynonymous SNV 0.738 2 21 hm7G_associated_SNPs_6229 0 0 0 0 2 TRAPPC12 chr2:3405664 5'GT 3405664 Upstream 69bp 6023 chr4 166259081 166259081 1 + G A UCEC 166259081 + 166259061 166259101 41 CCTTATGATTGGGAAAGAATGCCAAGATGGTACGTAGATAA CCTTATGATTGGGAAAGAATACCAAGATGGTACGTAGATAA Direct Loss 0.935348417731312 0 NA NA prediction 0.870696835462624 Functional Loss - MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166259081 chr4:166259081 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6230 0 0 1 0 1 MSMO1 chr4:166259089 5'GT 166259089 Upstream 9bp 6024 chr2 162036166 162036166 1 + G A UCEC 162036166 + 162036146 162036186 41 TTATAGTGATGCTACAGGACGAAGAGGAATGGATAAAAACA TTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACA Direct Loss 0.935347051088304 0 NA NA prediction 0.870694102176608 Functional Loss - TANK ENSG00000136560 CDS Human protein_coding chr2:162036166 chr2:162036166 nonsynonymous SNV 0.823 0 21 hm7G_associated_SNPs_6231 0 0 1 0 1 TANK chr2:162036125 3'AG 162036125 Downstream 42bp 6025 chr19 6744999 6744999 1 + G T BLCA 6744999 + 6744979 6745019 41 CGCTGGCCTTTTGGCAAGAAGAACAAGGTGGGGGCCGGGAC CGCTGGCCTTTTGGCAAGAATAACAAGGTGGGGGCCGGGAC Direct Loss 0.93533989791689 0 NA NA prediction 0.870679795833779 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6744999 chr19:6744999 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_6232 0 0 1 0 1 TRIP10 chr19:6745005 5'GT 6745005 Upstream 7bp 6026 chr3 9768817 9768817 1 + G A SKCM 9768817 + 9768797 9768837 41 CAATGGAAGAGTTGGACGGTGATGATGTGCGCGTGTCCTCT CAATGGAAGAGTTGGACGGTAATGATGTGCGCGTGTCCTCT Direct Loss 0.935327616860472 0 NA NA prediction 0.870655233720945 Functional Loss - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9768817 chr3:9768817 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_6234 0 0 0 0 2 CPNE9 chr3:9768797 3'AG 9768797 Downstream 21bp 6027 chr3 9768817 9768817 1 + G A SKCM 9768817 + 9768797 9768837 41 CAATGGAAGAGTTGGACGGTGATGATGTGCGCGTGTCCTCT CAATGGAAGAGTTGGACGGTAATGATGTGCGCGTGTCCTCT Direct Loss 0.935327616860472 0 NA NA prediction 0.870655233720945 Functional Loss - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9768817 chr3:9768817 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_6234 0 0 0 0 2 CPNE9 chr3:9768870 5'GT 9768870 Upstream 54bp 6028 chr11 64011493 64011493 1 + G C HNSC 64011493 + 64011473 64011513 41 TCAAAATAGAGCGACGAACTGAGCTGTAACCAGACTGGGGA TCAAAATAGAGCGACGAACTCAGCTGTAACCAGACTGGGGA Direct Loss 0.93532460013406 0 NA NA prediction 0.870649200268119 Functional Loss - FKBP2 ENSG00000173486 CDS Human protein_coding chr11:64011493 chr11:64011493 nonsynonymous SNV 0.986 3 21 hm7G_associated_SNPs_6235 0 0 1 0 1 FKBP2 chr11:64011440 3'AG 64011440 Downstream 54bp 6029 chr17 44782169 44782169 1 + G A rs373575202 44782169 + 44782149 44782189 41 ATGGAGAAAGCAGAAAGCCTGCAAGTGACGAGAGGAGACTT ATGGAGAAAGCAGAAAGCCTACAAGTGACGAGAGGAGACTT Direct Loss 0.935320341516988 0 NA NA prediction 0.870640683033975 Functional Loss - NSF ENSG00000073969 CDS Human protein_coding chr17:44782169 chr17:44782169 synonymous SNV . 0 21 hm7G_associated_SNPs_6237 0 0 0 0 2 NSF chr17:44782125 3'AG 44782125 Downstream 45bp 6030 chr17 44782169 44782169 1 + G A rs373575202 44782169 + 44782149 44782189 41 ATGGAGAAAGCAGAAAGCCTGCAAGTGACGAGAGGAGACTT ATGGAGAAAGCAGAAAGCCTACAAGTGACGAGAGGAGACTT Direct Loss 0.935320341516988 0 NA NA prediction 0.870640683033975 Functional Loss - NSF ENSG00000073969 CDS Human protein_coding chr17:44782169 chr17:44782169 synonymous SNV . 0 21 hm7G_associated_SNPs_6237 0 0 0 0 2 NSF chr17:44782220 5'GT 44782220 Upstream 52bp 6031 chr3 161220139 161220139 1 + G T LUAD 161220139 + 161220119 161220159 41 AAGGAGTTCCAGGATACCCAGGAAAACCGGGAGCACAAGGT AAGGAGTTCCAGGATACCCATGAAAACCGGGAGCACAAGGT Direct Loss 0.935311952043891 0 NA NA prediction 0.870623904087782 Functional Loss - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161220139 chr3:161220139 stopgain 1.000 1 21 hm7G_associated_SNPs_6238 0 0 0 0 2 OTOL1 chr3:161220095 3'AG 161220095 Downstream 45bp 6032 chr3 161220139 161220139 1 + G T LUAD 161220139 + 161220119 161220159 41 AAGGAGTTCCAGGATACCCAGGAAAACCGGGAGCACAAGGT AAGGAGTTCCAGGATACCCATGAAAACCGGGAGCACAAGGT Direct Loss 0.935311952043891 0 NA NA prediction 0.870623904087782 Functional Loss - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161220139 chr3:161220139 stopgain 1.000 1 21 hm7G_associated_SNPs_6238 0 0 0 0 2 OTOL1 chr3:161220157 5'GT 161220157 Upstream 19bp 6033 chr10 74890529 74890529 1 + G A BLCA 74890529 + 74890509 74890549 41 GATGAGGTAGCCACAGCCCTGAAGAGAAAGGGCCCCTATAC GATGAGGTAGCCACAGCCCTAAAGAGAAAGGGCCCCTATAC Direct Loss 0.93530797766847 0 NA NA prediction 0.87061595533694 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74890529 chr10:74890529 synonymous SNV . 0 21 hm7G_associated_SNPs_6239 0 0 0 0 1 NUDT13 chr10:74890461 3'AG 74890461 Downstream 69bp 6034 chr10 118101649 118101649 1 + G T LUAD 118101649 + 118101629 118101669 41 ACAAAGAAAAGAGAGCTTTTGATGAAAGAAAATGTCAAGAT ACAAAGAAAAGAGAGCTTTTTATGAAAGAAAATGTCAAGAT Direct Loss 0.935304231595762 0 NA NA prediction 0.870608463191525 Functional Loss - CCDC172 ENSG00000182645 CDS Human protein_coding chr10:118101649 chr10:118101649 nonsynonymous SNV 0.841 0 21 hm7G_associated_SNPs_6240 0 0 0 0 1 CCDC172 chr10:118101713 5'GT 118101713 Upstream 65bp 6035 chr6 131897807 131897807 1 + G A BRCA 131897807 + 131897787 131897827 41 TTTTTTAATTGTTCAGCCACGAGGAGGGGTGGAAGAAGGCC TTTTTTAATTGTTCAGCCACAAGGAGGGGTGGAAGAAGGCC Direct Loss 0.935288702507494 0 NA NA prediction 0.870577405014989 Functional Loss - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131897807 chr6:131897807 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_6241 0 0 0 0 2 ARG1 chr6:131897803 3'AG 131897803 Downstream 5bp 6036 chr6 131897807 131897807 1 + G A BRCA 131897807 + 131897787 131897827 41 TTTTTTAATTGTTCAGCCACGAGGAGGGGTGGAAGAAGGCC TTTTTTAATTGTTCAGCCACAAGGAGGGGTGGAAGAAGGCC Direct Loss 0.935288702507494 0 NA NA prediction 0.870577405014989 Functional Loss - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131897807 chr6:131897807 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_6241 0 0 0 0 2 ARG1 chr6:131897875 5'GT 131897875 Upstream 69bp 6037 chr19 50185293 50185293 1 + G A UCEC 50185293 + 50185273 50185313 41 GCATCCTCTGCATGTTTGCTGCCAAGGCCGGGGCCCGCAAG GCATCCTCTGCATGTTTGCTACCAAGGCCGGGGCCCGCAAG Direct Loss 0.935288476507568 0 NA NA prediction 0.870576953015136 Functional Loss - PRMT1 ENSG00000126457 CDS Human protein_coding chr19:50185293 chr19:50185293 nonsynonymous SNV 0.890 4 21 hm7G_associated_SNPs_6242 0 0 1 0 1 PRMT1 chr19:50185322 5'GT 50185322 Upstream 30bp 6038 chrX 83141563 83141563 1 + G A UCEC 83141563 + 83141543 83141583 41 TCTACTTTGCTCCTCAGCCTGAAGCACCGTGGATTCATAAG TCTACTTTGCTCCTCAGCCTAAAGCACCGTGGATTCATAAG Direct Loss 0.935282573758611 0 NA NA prediction 0.870565147517222 Functional Loss - CYLC1 ENSG00000183035 CDS Human protein_coding chrX:83141563 chrX:83141563 nonsynonymous SNV 0.793 2 21 hm7G_associated_SNPs_6244 0 0 0 0 1 CYLC1 chrX:83141560 3'AG 83141560 Downstream 4bp 6039 chr11 17333611 17333611 1 + G T ESCA 17333611 + 17333591 17333631 41 ACCCTAAAAATGAAGAGGATGATATGGTAGAAATGGAAGAA ACCCTAAAAATGAAGAGGATTATATGGTAGAAATGGAAGAA Direct Loss 0.935271960399559 0 NA NA prediction 0.870543920799119 Functional Loss - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17333611 chr11:17333611 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6246 0 0 1 0 1 NUCB2 chr11:17333575 3'AG 17333575 Downstream 37bp 6040 chr12 6560479 6560479 1 + G T SARC 6560479 + 6560459 6560499 41 TGCAGAGCCTTGTCATTACAGCTGCCCCAGGGAGGAGGAGG TGCAGAGCCTTGTCATTACATCTGCCCCAGGGAGGAGGAGG Direct Loss 0.935270841997196 0 NA NA prediction 0.870541683994392 Functional Loss - CD27 ENSG00000139193 CDS Human protein_coding chr12:6560479 chr12:6560479 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_6247 0 0 0 0 1 CD27 chr12:6560434 3'AG 6560434 Downstream 46bp 6041 chr17 12028614 12028614 1 + G A BRCA 12028614 + 12028594 12028634 41 TTGTCTTTATGTTCCAGCCTGAAAGAATAGACCCAAGCGCA TTGTCTTTATGTTCCAGCCTAAAAGAATAGACCCAAGCGCA Direct Loss 0.935266180870299 0 NA NA prediction 0.870532361740597 Functional Loss - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028614 chr17:12028614 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6249 0 0 1 0 2 MAP2K4 chr17:12028611 3'AG 12028611 Downstream 4bp 6042 chr17 12028614 12028614 1 + G A BRCA 12028614 + 12028594 12028634 41 TTGTCTTTATGTTCCAGCCTGAAAGAATAGACCCAAGCGCA TTGTCTTTATGTTCCAGCCTAAAAGAATAGACCCAAGCGCA Direct Loss 0.935266180870299 0 NA NA prediction 0.870532361740597 Functional Loss - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12028614 chr17:12028614 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6249 0 0 1 0 2 MAP2K4 chr17:12028688 5'GT 12028688 Upstream 75bp 6043 chr20 34205119 34205119 1 + G C CESC 34205119 + 34205099 34205139 41 CTTCTCCCGACCCTGGATCTGAGGCAGGAGATGCCTCCCCC CTTCTCCCGACCCTGGATCTCAGGCAGGAGATGCCTCCCCC Direct Loss 0.935263023249572 0 NA NA prediction 0.870526046499143 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34205119 chr20:34205119 synonymous SNV . 0 21 hm7G_associated_SNPs_6251 0 0 0 0 2 SPAG4 chr20:34205058 3'AG 34205058 Downstream 62bp 6044 chr20 34205119 34205119 1 + G C CESC 34205119 + 34205099 34205139 41 CTTCTCCCGACCCTGGATCTGAGGCAGGAGATGCCTCCCCC CTTCTCCCGACCCTGGATCTCAGGCAGGAGATGCCTCCCCC Direct Loss 0.935263023249572 0 NA NA prediction 0.870526046499143 Functional Loss - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34205119 chr20:34205119 synonymous SNV . 0 21 hm7G_associated_SNPs_6251 0 0 0 0 2 SPAG4 chr20:34205162 5'GT 34205162 Upstream 44bp 6045 chr20 36560073 36560073 1 + G A COAD 36560073 + 36560053 36560093 41 ACCCCATGACATGACAGCACGGACGGGCGAGGACGTGGAGA ACCCCATGACATGACAGCACAGACGGGCGAGGACGTGGAGA Direct Loss 0.93526283822641 0 NA NA prediction 0.87052567645282 Functional Loss - VSTM2L ENSG00000132821 CDS Human protein_coding chr20:36560073 chr20:36560073 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_6252 0 0 0 0 1 VSTM2L chr20:36560037 3'AG 36560037 Downstream 37bp 6046 chr8 11172556 11172556 1 + G T BLCA 11172556 + 11172536 11172576 41 GTGGTTTTGAGGCCCTGATTGAAAGAGAGTGGCTGCAGGTG GTGGTTTTGAGGCCCTGATTTAAAGAGAGTGGCTGCAGGTG Direct Loss 0.935260470657199 0 NA NA prediction 0.870520941314398 Functional Loss - MTMR9 ENSG00000104643 CDS Human protein_coding chr8:11172556 chr8:11172556 stopgain 0.966 1 21 hm7G_associated_SNPs_6253 0 0 1 0 1 MTMR9 chr8:11172573 5'GT 11172573 Upstream 18bp 6047 chrX 55249107 55249107 1 + G A UCEC 55249107 + 55249087 55249127 41 CTCTGCTTAAGATAGAGGATGCACCTGGAGATGGTCCTGAT CTCTGCTTAAGATAGAGGATACACCTGGAGATGGTCCTGAT Direct Loss 0.935258842954761 0 NA NA prediction 0.870517685909522 Functional Loss - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55249107 chrX:55249107 nonsynonymous SNV 0.279 0 21 hm7G_associated_SNPs_6254 0 0 0 0 2 PAGE5 chrX:55249054 3'AG 55249054 Downstream 54bp 6048 chrX 55249107 55249107 1 + G A UCEC 55249107 + 55249087 55249127 41 CTCTGCTTAAGATAGAGGATGCACCTGGAGATGGTCCTGAT CTCTGCTTAAGATAGAGGATACACCTGGAGATGGTCCTGAT Direct Loss 0.935258842954761 0 NA NA prediction 0.870517685909522 Functional Loss - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55249107 chrX:55249107 nonsynonymous SNV 0.279 0 21 hm7G_associated_SNPs_6254 0 0 0 0 2 PAGE5 chrX:55249179 5'GT 55249179 Upstream 73bp 6049 chr11 125445236 125445236 1 + G T SARC 125445236 + 125445216 125445256 41 CAGCAAAAGAGAGAGGAGCAGCGTCGAAGAAGGGCAAGTAG CAGCAAAAGAGAGAGGAGCATCGTCGAAGAAGGGCAAGTAG Direct Loss 0.935253372692563 0 NA NA prediction 0.870506745385125 Functional Loss - EI24 ENSG00000149547 CDS Human protein_coding chr11:125445236 chr11:125445236 nonsynonymous SNV 0.973 2 21 hm7G_associated_SNPs_6255 0 0 1 0 4 EI24 chr11:125445159 3'AG 125445159 Downstream 78bp 6050 chr11 125445236 125445236 1 + G T SARC 125445236 + 125445216 125445256 41 CAGCAAAAGAGAGAGGAGCAGCGTCGAAGAAGGGCAAGTAG CAGCAAAAGAGAGAGGAGCATCGTCGAAGAAGGGCAAGTAG Direct Loss 0.935253372692563 0 NA NA prediction 0.870506745385125 Functional Loss - EI24 ENSG00000149547 CDS Human protein_coding chr11:125445236 chr11:125445236 nonsynonymous SNV 0.973 2 21 hm7G_associated_SNPs_6255 0 0 1 0 4 EI24 chr11:125445201 3'AG 125445201 Downstream 36bp 6051 chr11 125445236 125445236 1 + G T SARC 125445236 + 125445216 125445256 41 CAGCAAAAGAGAGAGGAGCAGCGTCGAAGAAGGGCAAGTAG CAGCAAAAGAGAGAGGAGCATCGTCGAAGAAGGGCAAGTAG Direct Loss 0.935253372692563 0 NA NA prediction 0.870506745385125 Functional Loss - EI24 ENSG00000149547 CDS Human protein_coding chr11:125445236 chr11:125445236 nonsynonymous SNV 0.973 2 21 hm7G_associated_SNPs_6255 0 0 1 0 4 EI24 chr11:125445205 3'AG 125445205 Downstream 32bp 6052 chr11 125445236 125445236 1 + G T SARC 125445236 + 125445216 125445256 41 CAGCAAAAGAGAGAGGAGCAGCGTCGAAGAAGGGCAAGTAG CAGCAAAAGAGAGAGGAGCATCGTCGAAGAAGGGCAAGTAG Direct Loss 0.935253372692563 0 NA NA prediction 0.870506745385125 Functional Loss - EI24 ENSG00000149547 CDS Human protein_coding chr11:125445236 chr11:125445236 nonsynonymous SNV 0.973 2 21 hm7G_associated_SNPs_6255 0 0 1 0 4 EI24 chr11:125445304 5'GT 125445304 Upstream 69bp 6053 chr3 51979556 51979556 1 + G C KIRP 51979556 + 51979536 51979576 41 AGGCCCTGCAGGCAGTCTCTGAGCAGGAGAAGACGGTGGAG AGGCCCTGCAGGCAGTCTCTCAGCAGGAGAAGACGGTGGAG Direct Loss 0.935250140086006 0 NA NA prediction 0.870500280172012 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979556 chr3:51979556 nonsynonymous SNV 0.224 1 21 hm7G_associated_SNPs_6256 0 0 1 0 1 PARP3 chr3:51979511 3'AG 51979511 Downstream 46bp 6054 chr1 113265779 113265779 1 + G A LUAD 113265779 + 113265759 113265799 41 CACGCGGGCAAAGCCCTCCTGCGTGGACGGTGAGTGAGAGG CACGCGGGCAAAGCCCTCCTACGTGGACGGTGAGTGAGAGG Direct Loss 0.935236410195316 0 NA NA prediction 0.870472820390632 Functional Loss - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113265779 chr1:113265779 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_6258 0 0 0 0 1 FAM19A3 chr1:113265787 5'GT 113265787 Upstream 9bp 6055 chrX 129492622 129492622 1 + G A LGG 129492622 + 129492602 129492642 41 TTTTCATTTTAGATTCGAATGCAGGCTCAAGGAAGCTTGTT TTTTCATTTTAGATTCGAATACAGGCTCAAGGAAGCTTGTT Direct Loss 0.935234348003895 0 NA NA prediction 0.870468696007791 Functional Loss - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129492622 chrX:129492622 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6259 0 0 1 0 1 SLC25A14 chrX:129492614 3'AG 129492614 Downstream 9bp 6056 chr9 96863937 96863937 1 + G A SKCM 96863937 + 96863917 96863957 41 AGCTTGATGTGGTCTTGGGTGGAGCAACTGAAGGAGCCTGT AGCTTGATGTGGTCTTGGGTAGAGCAACTGAAGGAGCCTGT Direct Loss 0.935232692464581 0 NA NA prediction 0.870465384929161 Functional Loss - PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96863937 chr9:96863937 synonymous SNV . 0 21 hm7G_associated_SNPs_6260 0 0 1 0 2 PTPDC1 chr9:96863848 3'AG 96863848 Downstream 90bp 6057 chr9 96863937 96863937 1 + G A SKCM 96863937 + 96863917 96863957 41 AGCTTGATGTGGTCTTGGGTGGAGCAACTGAAGGAGCCTGT AGCTTGATGTGGTCTTGGGTAGAGCAACTGAAGGAGCCTGT Direct Loss 0.935232692464581 0 NA NA prediction 0.870465384929161 Functional Loss - PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96863937 chr9:96863937 synonymous SNV . 0 21 hm7G_associated_SNPs_6260 0 0 1 0 2 PTPDC1 chr9:96864033 5'GT 96864033 Upstream 97bp 6058 chr8 110576719 110576719 1 + G T UCEC 110576719 + 110576699 110576739 41 GCAGCCGAACAACAAAGGAAGAAAATGGAAAAGGAAGCACA GCAGCCGAACAACAAAGGAATAAAATGGAAAAGGAAGCACA Direct Loss 0.935229216117498 0 NA NA prediction 0.870458432234996 Functional Loss - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110576719 chr8:110576719 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6261 0 0 1 0 1 EBAG9 chr8:110576668 3'AG 110576668 Downstream 52bp 6059 chr7 36462273 36462273 1 + G A HNSC 36462273 + 36462253 36462293 41 ACACTTTTGATTGATGAATTGAATAAATTGAAGAACGAAGG ACACTTTTGATTGATGAATTAAATAAATTGAAGAACGAAGG Direct Loss 0.93522208222652 0 NA NA prediction 0.87044416445304 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36462273 chr7:36462273 synonymous SNV . 0 21 hm7G_associated_SNPs_6262 0 0 1 0 1 ANLN chr7:36462242 3'AG 36462242 Downstream 32bp 6060 chr1 43783031 43783031 1 + G A LUSC 43783031 + 43783011 43783051 41 GGCCAGGTCATCCGGGCCATGATCAAGAAGGACGGGCTGAA GGCCAGGTCATCCGGGCCATAATCAAGAAGGACGGGCTGAA Direct Loss 0.935215788588546 0 NA NA prediction 0.870431577177091 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43783031 chr1:43783031 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6263 0 0 0 0 1 TIE1 chr1:43783080 5'GT 43783080 Upstream 50bp 6061 chr2 27745336 27745336 1 + G A SKCM 27745336 + 27745316 27745356 41 TTCTTCCTTAGCGGTTCTCTGGACAGTCCAAGGCTCGATGC TTCTTCCTTAGCGGTTCTCTAGACAGTCCAAGGCTCGATGC Direct Loss 0.9352110736122 0 NA NA prediction 0.8704221472244 Functional Loss - GCKR ENSG00000084734 CDS Human protein_coding chr2:27745336 chr2:27745336 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_6264 0 0 0 0 1 GCKR chr2:27745327 3'AG 27745327 Downstream 10bp 6062 chr13 53254258 53254258 1 + G C PAAD 53254258 + 53254238 53254278 41 AGATCTATTCAGATGGTTCTGATGAAGTGAAACGTGCCATG AGATCTATTCAGATGGTTCTCATGAAGTGAAACGTGCCATG Direct Loss 0.935208352918753 0 NA NA prediction 0.870416705837507 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53254258 chr13:53254258 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6265 0 0 1 1 1 SUGT1 chr13:53254290 5'GT 53254290 Upstream 33bp 6063 chr8 97321838 97321838 1 + G A COAD 97321838 + 97321818 97321858 41 CAAGCGCGTAGGAACACAATGCTGGGTGTTTGGGTGAGTAA CAAGCGCGTAGGAACACAATACTGGGTGTTTGGGTGAGTAA Direct Loss 0.935199428138839 0 NA NA prediction 0.870398856277677 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97321838 chr8:97321838 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6267 0 0 1 0 2 PTDSS1 chr8:97321785 3'AG 97321785 Downstream 54bp 6064 chr8 97321838 97321838 1 + G A COAD 97321838 + 97321818 97321858 41 CAAGCGCGTAGGAACACAATGCTGGGTGTTTGGGTGAGTAA CAAGCGCGTAGGAACACAATACTGGGTGTTTGGGTGAGTAA Direct Loss 0.935199428138839 0 NA NA prediction 0.870398856277677 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97321838 chr8:97321838 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6267 0 0 1 0 2 PTDSS1 chr8:97321850 5'GT 97321850 Upstream 13bp 6065 chr5 6749706 6749706 1 + G A LUAD 6749706 + 6749686 6749726 41 ATCAAAGTAACTCAGGAGGTGATTGACTACCGGAGGTGGAT ATCAAAGTAACTCAGGAGGTAATTGACTACCGGAGGTGGAT Direct Loss 0.935198610018755 0 NA NA prediction 0.87039722003751 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6749706 chr5:6749706 synonymous SNV . 0 21 hm7G_associated_SNPs_6268 0 0 1 0 2 PAPD7 chr5:6749670 3'AG 6749670 Downstream 37bp 6066 chr5 6749706 6749706 1 + G A LUAD 6749706 + 6749686 6749726 41 ATCAAAGTAACTCAGGAGGTGATTGACTACCGGAGGTGGAT ATCAAAGTAACTCAGGAGGTAATTGACTACCGGAGGTGGAT Direct Loss 0.935198610018755 0 NA NA prediction 0.87039722003751 Functional Loss - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6749706 chr5:6749706 synonymous SNV . 0 21 hm7G_associated_SNPs_6268 0 0 1 0 2 PAPD7 chr5:6749770 5'GT 6749770 Upstream 65bp 6067 chr7 6054839 6054839 1 + G C SKCM 6054839 + 6054819 6054859 41 GATGATATTTTAAAACGTCTGTATGAGTTGAAAGCTGCAGT GATGATATTTTAAAACGTCTCTATGAGTTGAAAGCTGCAGT Direct Loss 0.935195479254344 0 NA NA prediction 0.870390958508687 Functional Loss - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6054839 chr7:6054839 synonymous SNV . 0 21 hm7G_associated_SNPs_6269 0 0 1 0 1 AIMP2 chr7:6054777 3'AG 6054777 Downstream 63bp 6068 chr6 126075617 126075617 1 + G C LUAD 126075617 + 126075597 126075637 41 ATTTATTTATGAAGGGATCTGCAAAGTTAGAAAAAGCTGAA ATTTATTTATGAAGGGATCTCCAAAGTTAGAAAAAGCTGAA Direct Loss 0.935192570485197 0 NA NA prediction 0.870385140970394 Functional Loss - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126075617 chr6:126075617 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6270 0 0 0 0 2 HEY2 chr6:126075611 3'AG 126075611 Downstream 7bp 6069 chr6 126075617 126075617 1 + G C LUAD 126075617 + 126075597 126075637 41 ATTTATTTATGAAGGGATCTGCAAAGTTAGAAAAAGCTGAA ATTTATTTATGAAGGGATCTCCAAAGTTAGAAAAAGCTGAA Direct Loss 0.935192570485197 0 NA NA prediction 0.870385140970394 Functional Loss - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126075617 chr6:126075617 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6270 0 0 0 0 2 HEY2 chr6:126075692 5'GT 126075692 Upstream 76bp 6070 chr3 180320695 180320695 1 + G T UCEC 180320695 + 180320675 180320715 41 TAAGAAAAGAGAAGAGAGTTGACAACATCGAGATACAGAAA TAAGAAAAGAGAAGAGAGTTTACAACATCGAGATACAGAAA Direct Loss 0.935190887906499 0 NA NA prediction 0.870381775812997 Functional Loss - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180320695 chr3:180320695 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6271 0 0 1 0 1 TTC14 chr3:180320679 3'AG 180320679 Downstream 17bp 6071 chr6 10725243 10725243 1 + G A UCEC 10725243 + 10725223 10725263 41 ACGCAGCACTGGTTGCTTCTGGTGGGATCATTGGCTATGTA ACGCAGCACTGGTTGCTTCTAGTGGGATCATTGGCTATGTA Direct Loss 0.935180886170995 0 NA NA prediction 0.87036177234199 Functional Loss - TMEM14C ENSG00000111843 CDS Human protein_coding chr6:10725243 chr6:10725243 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_6273 0 0 1 0 1 TMEM14C chr6:10725270 5'GT 10725270 Upstream 28bp 6072 chr8 48887308 48887308 1 + G A BRCA 48887308 + 48887288 48887328 41 CAATAGGCTTATGTAGACATGAGGAAGATTGGCAGTAGCCG CAATAGGCTTATGTAGACATAAGGAAGATTGGCAGTAGCCG Direct Loss 0.935179937851049 0 NA NA prediction 0.870359875702098 Functional Loss - MCM4 ENSG00000104738 CDS Human protein_coding chr8:48887308 chr8:48887308 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6274 0 0 1 0 1 MCM4 chr8:48887294 3'AG 48887294 Downstream 15bp 6073 chr21 37728969 37728969 1 + G C CESC 37728969 + 37728949 37728989 41 AATGATTACTGGAATGAAATGAAAGTGAAGAAAAATACAGA AATGATTACTGGAATGAAATCAAAGTGAAGAAAAATACAGA Direct Loss 0.935174948565744 0 NA NA prediction 0.870349897131488 Functional Loss - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37728969 chr21:37728969 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6275 0 0 1 0 2 MORC3 chr21:37728918 3'AG 37728918 Downstream 52bp 6074 chr21 37728969 37728969 1 + G C CESC 37728969 + 37728949 37728989 41 AATGATTACTGGAATGAAATGAAAGTGAAGAAAAATACAGA AATGATTACTGGAATGAAATCAAAGTGAAGAAAAATACAGA Direct Loss 0.935174948565744 0 NA NA prediction 0.870349897131488 Functional Loss - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37728969 chr21:37728969 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6275 0 0 1 0 2 MORC3 chr21:37729022 5'GT 37729022 Upstream 54bp 6075 chr13 31495779 31495779 1 + G A CESC 31495779 + 31495759 31495799 41 AAAATTTAAGCTTTGCATATGAATTCAAAGCTGATGCATTA AAAATTTAAGCTTTGCATATAAATTCAAAGCTGATGCATTA Direct Loss 0.93517347045428 0 NA NA prediction 0.87034694090856 Functional Loss - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31495779 chr13:31495779 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_6276 0 0 0 0 1 MEDAG chr13:31495698 3'AG 31495698 Downstream 82bp 6076 chr14 39646633 39646633 1 + G A UCEC 39646633 + 39646613 39646653 41 CAGGCTGGGCGGGGAGCGTCGGACCAGAAGAGAATCACGCC CAGGCTGGGCGGGGAGCGTCAGACCAGAAGAGAATCACGCC Direct Loss 0.93516810354319 0 NA NA prediction 0.870336207086379 Functional Loss - PNN ENSG00000100941 CDS Human protein_coding chr14:39646633 chr14:39646633 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6278 0 0 1 0 2 PNN chr14:39646616 3'AG 39646616 Downstream 18bp 6077 chr14 39646633 39646633 1 + G A UCEC 39646633 + 39646613 39646653 41 CAGGCTGGGCGGGGAGCGTCGGACCAGAAGAGAATCACGCC CAGGCTGGGCGGGGAGCGTCAGACCAGAAGAGAATCACGCC Direct Loss 0.93516810354319 0 NA NA prediction 0.870336207086379 Functional Loss - PNN ENSG00000100941 CDS Human protein_coding chr14:39646633 chr14:39646633 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6278 0 0 1 0 2 PNN chr14:39646688 5'GT 39646688 Upstream 56bp 6078 chr12 57987869 57987869 1 + G A GBM 57987869 + 57987849 57987889 41 GCCAGATGACTTTAAGGCCAGCTCCAAGATCAAGGTCAACA GCCAGATGACTTTAAGGCCAACTCCAAGATCAAGGTCAACA Direct Loss 0.935167735287054 0 NA NA prediction 0.870335470574108 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57987869 chr12:57987869 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_6279 0 0 0 0 3 PIP4K2C chr12:57987808 3'AG 57987808 Downstream 62bp 6079 chr12 57987869 57987869 1 + G A GBM 57987869 + 57987849 57987889 41 GCCAGATGACTTTAAGGCCAGCTCCAAGATCAAGGTCAACA GCCAGATGACTTTAAGGCCAACTCCAAGATCAAGGTCAACA Direct Loss 0.935167735287054 0 NA NA prediction 0.870335470574108 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57987869 chr12:57987869 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_6279 0 0 0 0 3 PIP4K2C chr12:57987882 5'GT 57987882 Upstream 14bp 6080 chr12 57987869 57987869 1 + G A GBM 57987869 + 57987849 57987889 41 GCCAGATGACTTTAAGGCCAGCTCCAAGATCAAGGTCAACA GCCAGATGACTTTAAGGCCAACTCCAAGATCAAGGTCAACA Direct Loss 0.935167735287054 0 NA NA prediction 0.870335470574108 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57987869 chr12:57987869 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_6279 0 0 0 0 3 PIP4K2C chr12:57987905 5'GT 57987905 Upstream 37bp 6081 chr19 41707249 41707249 1 + G T LUSC 41707249 + 41707229 41707269 41 ACGGTCGGCTATACCCTCCTGCTCCTGATGAAATACCCTCA ACGGTCGGCTATACCCTCCTTCTCCTGATGAAATACCCTCA Direct Loss 0.935163656250385 0 NA NA prediction 0.87032731250077 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707249 chr19:41707249 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_6280 0 0 0 0 1 CYP2S1 chr19:41707277 5'GT 41707277 Upstream 29bp 6082 chr3 128757706 128757706 1 + G T SARC 128757706 + 128757686 128757726 41 AGAGCCCTGGGGAAGATTTTGCTGAGCACGCTGGACGCTTT AGAGCCCTGGGGAAGATTTTTCTGAGCACGCTGGACGCTTT Direct Loss 0.935163518910486 0 NA NA prediction 0.870327037820973 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128757706 chr3:128757706 nonsynonymous SNV 0.951 2 21 hm7G_associated_SNPs_6281 0 0 0 0 2 EFCC1 chr3:128757674 3'AG 128757674 Downstream 33bp 6083 chr3 128757706 128757706 1 + G T SARC 128757706 + 128757686 128757726 41 AGAGCCCTGGGGAAGATTTTGCTGAGCACGCTGGACGCTTT AGAGCCCTGGGGAAGATTTTTCTGAGCACGCTGGACGCTTT Direct Loss 0.935163518910486 0 NA NA prediction 0.870327037820973 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128757706 chr3:128757706 nonsynonymous SNV 0.951 2 21 hm7G_associated_SNPs_6281 0 0 0 0 2 EFCC1 chr3:128757743 5'GT 128757743 Upstream 38bp 6084 chr8 57358440 57358440 1 - C T STAD 57358440 - 57358420 57358460 41 TCCTGGCGACCGTGCGGGCCGAATGCAGCCAGGATTGCGCG TCCTGGCGACCGTGCGGGCCAAATGCAGCCAGGATTGCGCG Direct Loss 0.935163141680948 0 NA NA prediction 0.870326283361896 Functional Loss - PENK ENSG00000181195 CDS Human protein_coding chr8:57358440 chr8:57358440 nonsynonymous SNV 0.513 4 21 hm7G_associated_SNPs_6282 0 0 0 0 2 PENK chr8:57358375 5'GT 57358375 Upstream 66bp 6085 chr8 57358440 57358440 1 - C T STAD 57358440 - 57358420 57358460 41 TCCTGGCGACCGTGCGGGCCGAATGCAGCCAGGATTGCGCG TCCTGGCGACCGTGCGGGCCAAATGCAGCCAGGATTGCGCG Direct Loss 0.935163141680948 0 NA NA prediction 0.870326283361896 Functional Loss - PENK ENSG00000181195 CDS Human antisense chr8:57358440 chr8:57358440 nonsynonymous SNV 0.513 4 21 hm7G_associated_SNPs_6282 0 0 0 0 2 LOC101929415 chr8:57358515 3'AG 57358515 Downstream 76bp 6086 chr20 33114076 33114076 1 + G A BLCA 33114076 + 33114056 33114096 41 GTCTTGTTTTCTGGCAGGCAGAGGTGGAGGAGACACTGAAG GTCTTGTTTTCTGGCAGGCAAAGGTGGAGGAGACACTGAAG Direct Loss 0.935158711319194 0 NA NA prediction 0.870317422638388 Functional Loss - DYNLRB1;DYNLRB1 ENSG00000125971 CDS Human protein_coding chr20:33114076 chr20:33114076 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6283 0 0 1 0 1 DYNLRB1 chr20:33114148 5'GT 33114148 Upstream 73bp 6087 chr22 44514968 44514968 1 + G A BLCA 44514968 + 44514948 44514988 41 GTGGAGGAGAGGATCATTGTGAAGCAGCTGGAGGAAGACCT GTGGAGGAGAGGATCATTGTAAAGCAGCTGGAGGAAGACCT Direct Loss 0.935158268994169 0 NA NA prediction 0.870316537988338 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44514968 chr22:44514968 synonymous SNV . 0 21 hm7G_associated_SNPs_6284 0 0 1 0 2 PARVB chr22:44514918 3'AG 44514918 Downstream 51bp 6088 chr22 44514968 44514968 1 + G A BLCA 44514968 + 44514948 44514988 41 GTGGAGGAGAGGATCATTGTGAAGCAGCTGGAGGAAGACCT GTGGAGGAGAGGATCATTGTAAAGCAGCTGGAGGAAGACCT Direct Loss 0.935158268994169 0 NA NA prediction 0.870316537988338 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44514968 chr22:44514968 synonymous SNV . 0 21 hm7G_associated_SNPs_6284 0 0 1 0 2 PARVB chr22:44515020 5'GT 44515020 Upstream 53bp 6089 chr3 14170986 14170986 1 + G A CESC 14170986 + 14170966 14171006 41 CCAGGCTTCCTGGAACGGCTGAGCGAGACCTCGGGTGGGAT CCAGGCTTCCTGGAACGGCTAAGCGAGACCTCGGGTGGGAT Direct Loss 0.935153381351685 0 NA NA prediction 0.870306762703371 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14170986 chr3:14170986 synonymous SNV . 0 21 hm7G_associated_SNPs_6285 0 0 1 0 2 TMEM43 chr3:14170912 3'AG 14170912 Downstream 75bp 6090 chr3 14170986 14170986 1 + G A CESC 14170986 + 14170966 14171006 41 CCAGGCTTCCTGGAACGGCTGAGCGAGACCTCGGGTGGGAT CCAGGCTTCCTGGAACGGCTAAGCGAGACCTCGGGTGGGAT Direct Loss 0.935153381351685 0 NA NA prediction 0.870306762703371 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14170986 chr3:14170986 synonymous SNV . 0 21 hm7G_associated_SNPs_6285 0 0 1 0 2 TMEM43 chr3:14171061 5'GT 14171061 Upstream 76bp 6091 chr1 85595768 85595768 1 + G T COAD 85595768 + 85595748 85595788 41 GAGCAAGAAAAGAAAGAAATGGAACTAGAAATGGCAAAGAA GAGCAAGAAAAGAAAGAAATTGAACTAGAAATGGCAAAGAA Direct Loss 0.935142682524366 0 NA NA prediction 0.870285365048732 Functional Loss - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85595768 chr1:85595768 nonsynonymous SNV 0.366 0 21 hm7G_associated_SNPs_6288 0 0 0 0 2 WDR63 chr1:85595673 3'AG 85595673 Downstream 96bp 6092 chr1 85595768 85595768 1 + G T COAD 85595768 + 85595748 85595788 41 GAGCAAGAAAAGAAAGAAATGGAACTAGAAATGGCAAAGAA GAGCAAGAAAAGAAAGAAATTGAACTAGAAATGGCAAAGAA Direct Loss 0.935142682524366 0 NA NA prediction 0.870285365048732 Functional Loss - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85595768 chr1:85595768 nonsynonymous SNV 0.366 0 21 hm7G_associated_SNPs_6288 0 0 0 0 2 WDR63 chr1:85595795 5'GT 85595795 Upstream 28bp 6093 chr4 652774 652774 1 + G A BLCA 652774 + 652754 652794 41 GCCTGGGGAAGGAGCCTGCTGACTGCGATGAGGACGAGCTG GCCTGGGGAAGGAGCCTGCTAACTGCGATGAGGACGAGCTG Direct Loss 0.935141187115451 0 NA NA prediction 0.870282374230902 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:652774 chr4:652774 nonsynonymous SNV 0.987 1 21 hm7G_associated_SNPs_6289 0 0 0 0 2 PDE6B chr4:652741 3'AG 652741 Downstream 34bp 6094 chr4 652774 652774 1 + G A BLCA 652774 + 652754 652794 41 GCCTGGGGAAGGAGCCTGCTGACTGCGATGAGGACGAGCTG GCCTGGGGAAGGAGCCTGCTAACTGCGATGAGGACGAGCTG Direct Loss 0.935141187115451 0 NA NA prediction 0.870282374230902 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:652774 chr4:652774 nonsynonymous SNV 0.987 1 21 hm7G_associated_SNPs_6289 0 0 0 0 2 PDE6B chr4:652806 5'GT 652806 Upstream 33bp 6095 chr1 110201531 110201531 1 + G A HNSC 110201531 + 110201511 110201551 41 CCATGGTTTGTTGGAGACAAGGTAATGGGGGCATGTGATGA CCATGGTTTGTTGGAGACAAAGTAATGGGGGCATGTGATGA Direct Loss 0.935120620453126 0 NA NA prediction 0.870241240906253 Functional Loss - GSTM4 ENSG00000168765 CDS Human protein_coding chr1:110201531 chr1:110201531 synonymous SNV . 0 21 hm7G_associated_SNPs_6290 0 0 1 0 2 GSTM4 chr1:110201436 3'AG 110201436 Downstream 96bp 6096 chr1 110201531 110201531 1 + G A HNSC 110201531 + 110201511 110201551 41 CCATGGTTTGTTGGAGACAAGGTAATGGGGGCATGTGATGA CCATGGTTTGTTGGAGACAAAGTAATGGGGGCATGTGATGA Direct Loss 0.935120620453126 0 NA NA prediction 0.870241240906253 Functional Loss - GSTM4 ENSG00000168765 CDS Human protein_coding chr1:110201531 chr1:110201531 synonymous SNV . 0 21 hm7G_associated_SNPs_6290 0 0 1 0 2 GSTM4 chr1:110201531 5'GT 110201531 Upstream 1bp 6097 chr3 196509524 196509524 1 + G C HNSC 196509524 + 196509504 196509544 41 CATAATTCTGAATCATGTCTGATAACGGAGAACTGGAAGAT CATAATTCTGAATCATGTCTCATAACGGAGAACTGGAAGAT Direct Loss 0.935115990155177 0 NA NA prediction 0.870231980310354 Functional Loss - PAK2 ENSG00000180370 CDS Human protein_coding chr3:196509524 chr3:196509524 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6291 0 0 1 0 1 PAK2 chr3:196509497 3'AG 196509497 Downstream 28bp 6098 chr16 56973994 56973994 1 + G A UCEC 56973994 + 56973974 56974014 41 ATCAAAATTTGCGGATGAATGCACAAGGTGGCCCTATTGTG ATCAAAATTTGCGGATGAATACACAAGGTGGCCCTATTGTG Direct Loss 0.935105178510295 0 NA NA prediction 0.870210357020591 Functional Loss - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56973994 chr16:56973994 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6292 0 0 1 0 1 HERPUD1 chr16:56974000 5'GT 56974000 Upstream 7bp 6099 chr3 36422171 36422171 1 + G A SKCM 36422171 + 36422151 36422191 41 AGCCCCCGCGAGGACGGCGTGGACGGGCTGCCCAAGGAGGC AGCCCCCGCGAGGACGGCGTAGACGGGCTGCCCAAGGAGGC Direct Loss 0.935102872502241 0 NA NA prediction 0.870205745004483 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36422171 chr3:36422171 synonymous SNV . 0 21 hm7G_associated_SNPs_6293 0 0 0 0 1 STAC chr3:36422246 5'GT 36422246 Upstream 76bp 6100 chr9 125154475 125154475 1 + G A SKCM 125154475 + 125154455 125154495 41 TATCTCCTTGTAGGAGAGAAGGAGATGGCAGCAGAGTTGGA TATCTCCTTGTAGGAGAGAAAGAGATGGCAGCAGAGTTGGA Direct Loss 0.935084286605193 0 NA NA prediction 0.870168573210386 Functional Loss - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125154475 chr9:125154475 synonymous SNV . 0 21 hm7G_associated_SNPs_6294 0 0 0 0 1 PTGS1 chr9:125154468 3'AG 125154468 Downstream 8bp 6101 chr10 17277380 17277380 1 + G T STAD 17277380 + 17277360 17277400 41 AGGAAGCTGCTGGAAGGCGAGGAGAGCAGGTAGGGAACTCA AGGAAGCTGCTGGAAGGCGATGAGAGCAGGTAGGGAACTCA Direct Loss 0.93508322858316 0 NA NA prediction 0.870166457166319 Functional Loss - VIM ENSG00000026025 CDS Human protein_coding chr10:17277380 chr10:17277380 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6295 0 0 1 1 1 VIM chr10:17277388 5'GT 17277388 Upstream 9bp 6102 chr16 2495468 2495468 1 + G A BLCA 2495468 + 2495448 2495488 41 TCTTTCCGCAGGTACATTCTGATCGACTGGCTGGTGGAAGT TCTTTCCGCAGGTACATTCTAATCGACTGGCTGGTGGAAGT Direct Loss 0.935072207565767 0 NA NA prediction 0.870144415131534 Functional Loss - CCNF ENSG00000162063 CDS Human protein_coding chr16:2495468 chr16:2495468 synonymous SNV . 0 21 hm7G_associated_SNPs_6297 0 0 1 0 1 CCNF chr16:2495459 3'AG 2495459 Downstream 10bp 6103 chr1 26751952 26751952 1 + G A UCEC 26751952 + 26751932 26751972 41 CGGCCAAAAGGAAAGAGCATGCAGAAGCGCAGATCAAAAGG CGGCCAAAAGGAAAGAGCATACAGAAGCGCAGATCAAAAGG Direct Loss 0.935046586049829 0 NA NA prediction 0.870093172099659 Functional Loss - LIN28A ENSG00000131914 CDS Human protein_coding chr1:26751952 chr1:26751952 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6299 0 0 0 1 1 LIN28A chr1:26751978 5'GT 26751978 Upstream 27bp 6104 chr4 71471958 71471958 1 + G A rs115723025 71471958 + 71471938 71471978 41 TTTCCAGGATTTGGAGGCATGAGGCCCGGCTTTGAGGGAAT TTTCCAGGATTTGGAGGCATAAGGCCCGGCTTTGAGGGAAT Direct Loss 0.935043037580106 0 NA NA prediction 0.870086075160213 Functional Loss - AMBN ENSG00000178522 CDS Human protein_coding chr4:71471958 chr4:71471958 nonsynonymous SNV 0.343 1 21 hm7G_associated_SNPs_6300 0 0 0 0 1 AMBN chr4:71471902 3'AG 71471902 Downstream 57bp 6105 chr1 233482258 233482258 1 + G A SKCM 233482258 + 233482238 233482278 41 AAGATTACAGATTTTGGGTTGGCGAGGGAATGGCACAGGAC AAGATTACAGATTTTGGGTTAGCGAGGGAATGGCACAGGAC Direct Loss 0.935039968381369 0 NA NA prediction 0.870079936762738 Functional Loss - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482258 chr1:233482258 synonymous SNV . 0 21 hm7G_associated_SNPs_6301 0 0 1 0 1 MAP3K21 chr1:233482188 3'AG 233482188 Downstream 71bp 6106 chr6 117023290 117023290 1 + G A CESC 117023290 + 117023270 117023310 41 TTATCAAACTTCTTAATTCTGAACATGAAGATGTTCAGGAA TTATCAAACTTCTTAATTCTAAACATGAAGATGTTCAGGAA Direct Loss 0.935039284326607 0 NA NA prediction 0.870078568653215 Functional Loss - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117023290 chr6:117023290 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_6302 0 0 1 0 1 KPNA5 chr6:117023313 5'GT 117023313 Upstream 24bp 6107 chrX 49093601 49093601 1 + G T GBM 49093601 + 49093581 49093621 41 CGCGCCTTCACCACTGAGCTGGTTGTAGAGGCTGTGGTCCG CGCGCCTTCACCACTGAGCTTGTTGTAGAGGCTGTGGTCCG Direct Loss 0.935028995088777 0 NA NA prediction 0.870057990177554 Functional Loss - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093601 chrX:49093601 synonymous SNV . 0 21 hm7G_associated_SNPs_6303 0 0 0 0 1 CCDC22 chrX:49093553 3'AG 49093553 Downstream 49bp 6108 chr11 63764545 63764545 1 + G A BLCA 63764545 + 63764525 63764565 41 ATGGACCTGATTGAGCAGGTGGAGAAGCAGACCTCTGTCGC ATGGACCTGATTGAGCAGGTAGAGAAGCAGACCTCTGTCGC Direct Loss 0.935026093004262 0 NA NA prediction 0.870052186008524 Functional Loss - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764545 chr11:63764545 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_6304 0 0 1 0 1 OTUB1 chr11:63764522 3'AG 63764522 Downstream 24bp 6109 chr7 39610115 39610115 1 + G C LUAD 39610115 + 39610095 39610135 41 TTATTTTTAGGAAGGTTATAGAGATGGAATAGATGCTGGCA TTATTTTTAGGAAGGTTATACAGATGGAATAGATGCTGGCA Direct Loss 0.935022343472111 0 NA NA prediction 0.870044686944222 Functional Loss - YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39610115 chr7:39610115 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6305 0 0 1 0 1 YAE1D1 chr7:39610105 3'AG 39610105 Downstream 11bp 6110 chr12 8866600 8866600 1 + G T HNSC 8866600 + 8866580 8866620 41 GACTTTAGGGCTGTGGTGATGGATGAGGTGGTGCTGACAAT GACTTTAGGGCTGTGGTGATTGATGAGGTGGTGCTGACAAT Direct Loss 0.935014468021533 0 NA NA prediction 0.870028936043066 Functional Loss - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8866600 chr12:8866600 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6307 0 0 1 3 1 RIMKLB chr12:8866637 5'GT 8866637 Upstream 38bp 6111 chr6 110531958 110531958 1 + G A SKCM 110531958 + 110531938 110531978 41 CAGCAAAGAGGCAGAAAAAAGGAAAACAGGAAGAAGAGAAA CAGCAAAGAGGCAGAAAAAAAGAAAACAGGAAGAAGAGAAA Direct Loss 0.935011560327775 0 NA NA prediction 0.870023120655551 Functional Loss - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110531958 chr6:110531958 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6308 0 0 1 0 2 CDC40 chr6:110531910 3'AG 110531910 Downstream 49bp 6112 chr6 110531958 110531958 1 + G A SKCM 110531958 + 110531938 110531978 41 CAGCAAAGAGGCAGAAAAAAGGAAAACAGGAAGAAGAGAAA CAGCAAAGAGGCAGAAAAAAAGAAAACAGGAAGAAGAGAAA Direct Loss 0.935011560327775 0 NA NA prediction 0.870023120655551 Functional Loss - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110531958 chr6:110531958 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6308 0 0 1 0 2 CDC40 chr6:110532006 5'GT 110532006 Upstream 49bp 6113 chr12 70794062 70794062 1 + G T SKCM 70794062 + 70794042 70794082 41 CATGAATTGGCAACAGTACTGGAAAGATGAGATTGGTTCCC CATGAATTGGCAACAGTACTTGAAAGATGAGATTGGTTCCC Direct Loss 0.935011409078202 0 NA NA prediction 0.870022818156404 Functional Loss - KCNMB4 ENSG00000135643 CDS Human protein_coding chr12:70794062 chr12:70794062 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6309 0 0 0 0 2 KCNMB4 chr12:70793989 3'AG 70793989 Downstream 74bp 6114 chr12 70794062 70794062 1 + G T SKCM 70794062 + 70794042 70794082 41 CATGAATTGGCAACAGTACTGGAAAGATGAGATTGGTTCCC CATGAATTGGCAACAGTACTTGAAAGATGAGATTGGTTCCC Direct Loss 0.935011409078202 0 NA NA prediction 0.870022818156404 Functional Loss - KCNMB4 ENSG00000135643 CDS Human protein_coding chr12:70794062 chr12:70794062 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6309 0 0 0 0 2 KCNMB4 chr12:70794116 5'GT 70794116 Upstream 55bp 6115 chrX 37663189 37663189 1 + G A SKCM 37663189 + 37663169 37663209 41 AAGAAGAAGGGGTTCAAAATGGAAGTGGGACAATACATTTT AAGAAGAAGGGGTTCAAAATAGAAGTGGGACAATACATTTT Direct Loss 0.934999642735886 0 NA NA prediction 0.869999285471772 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37663189 chrX:37663189 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_6312 0 0 0 0 1 CYBB chrX:37663130 3'AG 37663130 Downstream 60bp 6116 chr22 27019208 27019208 1 + G A SKCM 27019208 + 27019188 27019228 41 CCTGGCACAGATGGTGGTGTGGGATGAGGACGGCTTCCAGG CCTGGCACAGATGGTGGTGTAGGATGAGGACGGCTTCCAGG Direct Loss 0.934999192434839 0 NA NA prediction 0.869998384869678 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27019208 chr22:27019208 stopgain 0.994 1 21 hm7G_associated_SNPs_6313 0 0 0 0 1 CRYBA4 chr22:27019198 3'AG 27019198 Downstream 11bp 6117 chr5 72868335 72868335 1 + G T SARC 72868335 + 72868315 72868355 41 AGGTCGTTATGTTAAAGTCTGGGACATGTTAAAAGGAGGAC AGGTCGTTATGTTAAAGTCTTGGACATGTTAAAAGGAGGAC Direct Loss 0.934996059468735 0 NA NA prediction 0.86999211893747 Functional Loss - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72868335 chr5:72868335 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6314 0 0 1 0 1 UTP15 chr5:72868314 3'AG 72868314 Downstream 22bp 6118 chr10 30736836 30736836 1 + G A LAML 30736836 + 30736816 30736856 41 GCCTTTGGAAAGGTATACTTGGCACAAGATATAAAGACGAA GCCTTTGGAAAGGTATACTTAGCACAAGATATAAAGACGAA Direct Loss 0.934995521393957 0 NA NA prediction 0.869991042787913 Functional Loss - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30736836 chr10:30736836 synonymous SNV . 0 21 hm7G_associated_SNPs_6315 0 0 1 0 1 MAP3K8 chr10:30736878 5'GT 30736878 Upstream 43bp 6119 chr9 101608399 101608399 1 + G A rs572700544 101608399 + 101608379 101608419 41 GAGAATCAGAAGTTCATCTTGCAGGAGGTAGGTGAACTCTC GAGAATCAGAAGTTCATCTTACAGGAGGTAGGTGAACTCTC Direct Loss 0.934994526301895 0 NA NA prediction 0.869989052603789 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101608399 chr9:101608399 synonymous SNV . 0 21 hm7G_associated_SNPs_6316 0 0 1 0 1 GALNT12 chr9:101608405 5'GT 101608405 Upstream 7bp 6120 chr20 5905694 5905694 1 + G A BLCA 5905694 + 5905674 5905714 41 GAAATTCAGCCAAAGGGGCTGACTGTCATTGGAGCGGTGGG GAAATTCAGCCAAAGGGGCTAACTGTCATTGGAGCGGTGGG Direct Loss 0.934983963860706 0 NA NA prediction 0.869967927721413 Functional Loss - CHGB ENSG00000089199 CDS Human protein_coding chr20:5905694 chr20:5905694 synonymous SNV . 0 21 hm7G_associated_SNPs_6320 0 0 0 0 1 CHGB chr20:5905618 3'AG 5905618 Downstream 77bp 6121 chr20 3204021 3204021 1 + G C BLCA 3204021 + 3204001 3204041 41 TCACCCCTCAGGTACGCAGAGATGCCTAAGGCGGAGAAGAA TCACCCCTCAGGTACGCAGACATGCCTAAGGCGGAGAAGAA Direct Loss 0.934970478053262 0 NA NA prediction 0.869940956106524 Functional Loss - ITPA ENSG00000125877 CDS Human protein_coding chr20:3204021 chr20:3204021 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_6322 0 0 1 0 1 ITPA chr20:3204012 3'AG 3204012 Downstream 10bp 6122 chr14 103177284 103177284 1 + G A UCEC 103177284 + 103177264 103177304 41 TCTTCCAGCGAGGATGAACTGGAAGAGGCAAATGGAAACAA TCTTCCAGCGAGGATGAACTAGAAGAGGCAAATGGAAACAA Direct Loss 0.934966787420316 0 NA NA prediction 0.869933574840631 Functional Loss - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103177284 chr14:103177284 synonymous SNV . 0 21 hm7G_associated_SNPs_6323 0 0 1 0 2 RCOR1 chr14:103177272 3'AG 103177272 Downstream 13bp 6123 chr14 103177284 103177284 1 + G A UCEC 103177284 + 103177264 103177304 41 TCTTCCAGCGAGGATGAACTGGAAGAGGCAAATGGAAACAA TCTTCCAGCGAGGATGAACTAGAAGAGGCAAATGGAAACAA Direct Loss 0.934966787420316 0 NA NA prediction 0.869933574840631 Functional Loss - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103177284 chr14:103177284 synonymous SNV . 0 21 hm7G_associated_SNPs_6323 0 0 1 0 2 RCOR1 chr14:103177350 5'GT 103177350 Upstream 67bp 6124 chr16 89704303 89704303 1 + G A COAD 89704303 + 89704283 89704323 41 CCTGATCGCTGAGCTGCTCAGGAGGAACTGGACGGAGGCGG CCTGATCGCTGAGCTGCTCAAGAGGAACTGGACGGAGGCGG Direct Loss 0.934954886297668 0 NA NA prediction 0.869909772595335 Functional Loss - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89704303 chr16:89704303 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_6324 0 0 1 0 1 DPEP1 chr16:89704379 5'GT 89704379 Upstream 77bp 6125 chr7 140380901 140380901 1 + G C BLCA 140380901 + 140380881 140380921 41 CCCGTGGACTTGAAAAGGAAGATTGCACGGCTGGGGATCAA CCCGTGGACTTGAAAAGGAACATTGCACGGCTGGGGATCAA Direct Loss 0.93494977348579 0 NA NA prediction 0.86989954697158 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380901 chr7:140380901 nonsynonymous SNV 0.893 2 21 hm7G_associated_SNPs_6326 0 0 1 0 2 ADCK2 chr7:140380842 3'AG 140380842 Downstream 60bp 6126 chr7 140380901 140380901 1 + G C BLCA 140380901 + 140380881 140380921 41 CCCGTGGACTTGAAAAGGAAGATTGCACGGCTGGGGATCAA CCCGTGGACTTGAAAAGGAACATTGCACGGCTGGGGATCAA Direct Loss 0.93494977348579 0 NA NA prediction 0.86989954697158 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380901 chr7:140380901 nonsynonymous SNV 0.893 2 21 hm7G_associated_SNPs_6326 0 0 1 0 2 ADCK2 chr7:140380937 5'GT 140380937 Upstream 37bp 6127 chr17 61683700 61683700 1 + G A ESCA 61683700 + 61683680 61683720 41 AGGACACTTATTTGCTGTATGAGGGTCGAGGCCCTGGTGGC AGGACACTTATTTGCTGTATAAGGGTCGAGGCCCTGGTGGC Direct Loss 0.934939244180818 0 NA NA prediction 0.869878488361635 Functional Loss - TACO1 ENSG00000136463 CDS Human protein_coding chr17:61683700 chr17:61683700 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_6328 0 0 1 0 1 TACO1 chr17:61683673 3'AG 61683673 Downstream 28bp 6128 chr2 37319141 37319141 1 + G A LUAD 37319141 + 37319121 37319161 41 TACAGAAAAAAGATTCACATGAAAAACCAAGCTGAAGAAAA TACAGAAAAAAGATTCACATAAAAAACCAAGCTGAAGAAAA Direct Loss 0.934925971524735 0 NA NA prediction 0.86985194304947 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319141 chr2:37319141 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_6329 0 0 1 0 2 GPATCH11 chr2:37319059 3'AG 37319059 Downstream 83bp 6129 chr2 37319141 37319141 1 + G A LUAD 37319141 + 37319121 37319161 41 TACAGAAAAAAGATTCACATGAAAAACCAAGCTGAAGAAAA TACAGAAAAAAGATTCACATAAAAAACCAAGCTGAAGAAAA Direct Loss 0.934925971524735 0 NA NA prediction 0.86985194304947 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319141 chr2:37319141 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_6329 0 0 1 0 2 GPATCH11 chr2:37319179 5'GT 37319179 Upstream 39bp 6130 chr11 63312136 63312136 1 + G A BLCA 63312136 + 63312116 63312156 41 TCCAGTGTCTTCTCAGTCCTGAGCAACAGTGCAGAGGTGAA TCCAGTGTCTTCTCAGTCCTAAGCAACAGTGCAGAGGTGAA Direct Loss 0.934922969836232 0 NA NA prediction 0.869845939672465 Functional Loss - RARRES3 ENSG00000133321 CDS Human protein_coding chr11:63312136 chr11:63312136 synonymous SNV . 0 21 hm7G_associated_SNPs_6330 0 0 0 0 1 RARRES3 chr11:63312093 3'AG 63312093 Downstream 44bp 6131 chr17 18631020 18631020 1 + G A STAD 18631020 + 18631000 18631040 41 GCCGAGATGGAGAAGAGTAAGCAGGAGCTGGAGACGATGGC GCCGAGATGGAGAAGAGTAAACAGGAGCTGGAGACGATGGC Direct Loss 0.934918994321099 0 NA NA prediction 0.869837988642199 Functional Loss - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18631020 chr17:18631020 synonymous SNV . 0 21 hm7G_associated_SNPs_6331 0 0 0 0 1 TRIM16L chr17:18631071 5'GT 18631071 Upstream 52bp 6132 chr12 50149493 50149493 1 + G T LUSC 50149493 + 50149473 50149513 41 CACCTCATAGCCATGAAACTGAACAGAAAAGACTGGGACTT CACCTCATAGCCATGAAACTTAACAGAAAAGACTGGGACTT Direct Loss 0.934917496298493 0 NA NA prediction 0.869834992596985 Functional Loss - TMBIM6 ENSG00000139644 CDS Human protein_coding chr12:50149493 chr12:50149493 stopgain 0.990 1 21 hm7G_associated_SNPs_6332 0 0 1 0 2 TMBIM6 chr12:50149418 3'AG 50149418 Downstream 76bp 6133 chr12 50149493 50149493 1 + G T LUSC 50149493 + 50149473 50149513 41 CACCTCATAGCCATGAAACTGAACAGAAAAGACTGGGACTT CACCTCATAGCCATGAAACTTAACAGAAAAGACTGGGACTT Direct Loss 0.934917496298493 0 NA NA prediction 0.869834992596985 Functional Loss - TMBIM6 ENSG00000139644 CDS Human protein_coding chr12:50149493 chr12:50149493 stopgain 0.990 1 21 hm7G_associated_SNPs_6332 0 0 1 0 2 TMBIM6 chr12:50149538 5'GT 50149538 Upstream 46bp 6134 chr11 66262739 66262739 1 + G T UCEC 66262739 + 66262719 66262759 41 AACCCAGAGACGGGCGAGCAGGTGAGGGAGGCCTCAGCAGA AACCCAGAGACGGGCGAGCATGTGAGGGAGGCCTCAGCAGA Direct Loss 0.934897254504932 0 NA NA prediction 0.869794509009864 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66262739 chr11:66262739 nonsynonymous SNV 0.973 0 21 hm7G_associated_SNPs_6334 0 0 1 0 2 DPP3 chr11:66262677 3'AG 66262677 Downstream 63bp 6135 chr11 66262739 66262739 1 + G T UCEC 66262739 + 66262719 66262759 41 AACCCAGAGACGGGCGAGCAGGTGAGGGAGGCCTCAGCAGA AACCCAGAGACGGGCGAGCATGTGAGGGAGGCCTCAGCAGA Direct Loss 0.934897254504932 0 NA NA prediction 0.869794509009864 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66262739 chr11:66262739 nonsynonymous SNV 0.973 0 21 hm7G_associated_SNPs_6334 0 0 1 0 2 DPP3 chr11:66262739 5'GT 66262739 Upstream 1bp 6136 chr19 994280 994280 1 + G A LIHC 994280 + 994260 994300 41 GAGGACGAGGTGCGCAACCTGCGCAAGATCAATCGGGACCT GAGGACGAGGTGCGCAACCTACGCAAGATCAATCGGGACCT Direct Loss 0.934894393321983 0 NA NA prediction 0.869788786643967 Functional Loss - WDR18 ENSG00000065268 CDS Human protein_coding chr19:994280 chr19:994280 synonymous SNV . 0 21 hm7G_associated_SNPs_6336 0 0 1 0 1 WDR18 chr19:994212 3'AG 994212 Downstream 69bp 6137 chr3 132071660 132071660 1 + G A BLCA 132071660 + 132071640 132071680 41 ACTTGACGGAATTGTACTTTGAGAAGGGGTAAGTGACTAAG ACTTGACGGAATTGTACTTTAAGAAGGGGTAAGTGACTAAG Direct Loss 0.934886858561807 0 NA NA prediction 0.869773717123613 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132071660 chr3:132071660 nonsynonymous SNV 0.026 1 21 hm7G_associated_SNPs_6337 0 0 0 0 2 ACPP chr3:132071564 3'AG 132071564 Downstream 97bp 6138 chr3 132071660 132071660 1 + G A BLCA 132071660 + 132071640 132071680 41 ACTTGACGGAATTGTACTTTGAGAAGGGGTAAGTGACTAAG ACTTGACGGAATTGTACTTTAAGAAGGGGTAAGTGACTAAG Direct Loss 0.934886858561807 0 NA NA prediction 0.869773717123613 Functional Loss - ACPP ENSG00000014257 CDS Human protein_coding chr3:132071660 chr3:132071660 nonsynonymous SNV 0.026 1 21 hm7G_associated_SNPs_6337 0 0 0 0 2 ACPP chr3:132071667 5'GT 132071667 Upstream 8bp 6139 chr15 74623044 74623044 1 + G C ESCA 74623044 + 74623024 74623064 41 CTGCTGAGTGAGCTGGATATGAAGAAACTGAGGGACAGGGT CTGCTGAGTGAGCTGGATATCAAGAAACTGAGGGACAGGGT Direct Loss 0.934878757409327 0 NA NA prediction 0.869757514818654 Functional Loss - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74623044 chr15:74623044 nonsynonymous SNV 0.699 0 21 hm7G_associated_SNPs_6339 0 0 0 0 1 CCDC33 chr15:74623092 5'GT 74623092 Upstream 49bp 6140 chr8 91049134 91049134 1 + G T SARC 91049134 + 91049114 91049154 41 CAGGTTTTGTAGTACCAAGTGCTTCTGCCAAAGCAGGTGTG CAGGTTTTGTAGTACCAAGTTCTTCTGCCAAAGCAGGTGTG Direct Loss 0.934874453063047 0 NA NA prediction 0.869748906126095 Functional Loss - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91049134 chr8:91049134 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_6340 0 0 1 0 2 DECR1 chr8:91049069 3'AG 91049069 Downstream 66bp 6141 chr8 91049134 91049134 1 + G T SARC 91049134 + 91049114 91049154 41 CAGGTTTTGTAGTACCAAGTGCTTCTGCCAAAGCAGGTGTG CAGGTTTTGTAGTACCAAGTTCTTCTGCCAAAGCAGGTGTG Direct Loss 0.934874453063047 0 NA NA prediction 0.869748906126095 Functional Loss - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91049134 chr8:91049134 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_6340 0 0 1 0 2 DECR1 chr8:91049168 5'GT 91049168 Upstream 35bp 6142 chr2 239234561 239234561 1 + G A LUAD 239234561 + 239234541 239234581 41 TCGTGGCGGGGCATGAGCCTGAAAGAACAAACGAGCTGCTC TCGTGGCGGGGCATGAGCCTAAAAGAACAAACGAGCTGCTC Direct Loss 0.934873458793034 0 NA NA prediction 0.869746917586068 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239234561 chr2:239234561 nonsynonymous SNV 0.989 4 21 hm7G_associated_SNPs_6341 0 0 1 0 1 TRAF3IP1 chr2:239234611 5'GT 239234611 Upstream 51bp 6143 chr11 77580777 77580777 1 + G A GBM 77580777 + 77580757 77580797 41 TCCACATCCAGCATTCTCCTGGTGTGCAGCCTGCAGATGTG TCCACATCCAGCATTCTCCTAGTGTGCAGCCTGCAGATGTG Direct Loss 0.934872914861555 0 NA NA prediction 0.869745829723111 Functional Loss - AAMDC ENSG00000087884 CDS Human protein_coding chr11:77580777 chr11:77580777 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6342 0 0 1 0 2 AAMDC chr11:77580768 3'AG 77580768 Downstream 10bp 6144 chr11 77580777 77580777 1 + G A GBM 77580777 + 77580757 77580797 41 TCCACATCCAGCATTCTCCTGGTGTGCAGCCTGCAGATGTG TCCACATCCAGCATTCTCCTAGTGTGCAGCCTGCAGATGTG Direct Loss 0.934872914861555 0 NA NA prediction 0.869745829723111 Functional Loss - AAMDC ENSG00000087884 CDS Human protein_coding chr11:77580777 chr11:77580777 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6342 0 0 1 0 2 AAMDC chr11:77580863 5'GT 77580863 Upstream 87bp 6145 chr5 50683518 50683518 1 + G T COAD 50683518 + 50683498 50683538 41 AGACCACGATGTGGTGGAGAGGGCCAGTCTAGGCGCTGGCG AGACCACGATGTGGTGGAGATGGCCAGTCTAGGCGCTGGCG Direct Loss 0.934870384499148 0 NA NA prediction 0.869740768998296 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50683518 chr5:50683518 nonsynonymous SNV 0.979 2 21 hm7G_associated_SNPs_6343 0 0 0 0 1 ISL1 chr5:50683583 5'GT 50683583 Upstream 66bp 6146 chr8 82196169 82196169 1 + G T LUSC 82196169 + 82196149 82196189 41 GGAGTGGGATGGGAAGGAAAGCACAATAACAAGAAAATTGA GGAGTGGGATGGGAAGGAAATCACAATAACAAGAAAATTGA Direct Loss 0.934857601300089 0 NA NA prediction 0.869715202600179 Functional Loss - FABP5 ENSG00000164687 CDS Human protein_coding chr8:82196169 chr8:82196169 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6345 0 0 0 0 2 FABP5 chr8:82196108 3'AG 82196108 Downstream 62bp 6147 chr8 82196169 82196169 1 + G T LUSC 82196169 + 82196149 82196189 41 GGAGTGGGATGGGAAGGAAAGCACAATAACAAGAAAATTGA GGAGTGGGATGGGAAGGAAATCACAATAACAAGAAAATTGA Direct Loss 0.934857601300089 0 NA NA prediction 0.869715202600179 Functional Loss - FABP5 ENSG00000164687 CDS Human protein_coding chr8:82196169 chr8:82196169 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6345 0 0 0 0 2 FABP5 chr8:82196209 5'GT 82196209 Upstream 41bp 6148 chr12 6952169 6952169 1 + G A LUSC 6952169 + 6952149 6952189 41 GAGGTGGTGGGACGAGTCCAGATGCGGACGCGGCGGACGTT GAGGTGGTGGGACGAGTCCAAATGCGGACGCGGCGGACGTT Direct Loss 0.934855742492094 0 NA NA prediction 0.869711484984188 Functional Loss - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6952169 chr12:6952169 synonymous SNV . 0 21 hm7G_associated_SNPs_6346 0 0 1 0 2 GNB3 chr12:6952134 3'AG 6952134 Downstream 36bp 6149 chr12 6952169 6952169 1 + G A LUSC 6952169 + 6952149 6952189 41 GAGGTGGTGGGACGAGTCCAGATGCGGACGCGGCGGACGTT GAGGTGGTGGGACGAGTCCAAATGCGGACGCGGCGGACGTT Direct Loss 0.934855742492094 0 NA NA prediction 0.869711484984188 Functional Loss - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6952169 chr12:6952169 synonymous SNV . 0 21 hm7G_associated_SNPs_6346 0 0 1 0 2 GNB3 chr12:6952240 5'GT 6952240 Upstream 72bp 6150 chrX 153665555 153665555 1 + G A rs377447247 153665555 + 153665535 153665575 41 GCGGCGGCGACTGCTGCGGTGAAGGAGGAGGAGGAGCCGAG GCGGCGGCGACTGCTGCGGTAAAGGAGGAGGAGGAGCCGAG Direct Loss 0.934855106265545 0 NA NA prediction 0.869710212531089 Functional Loss - GDI1 ENSG00000203879 UTR5 Human protein_coding chrX:153665555 chrX:153665555 . . 0 21 hm7G_associated_SNPs_6347 0 0 1 0 1 GDI1 chrX:153665645 5'GT 153665645 Upstream 91bp 6151 chr22 27024309 27024309 1 + G A SKCM 27024309 + 27024289 27024329 41 AGAACTTCCTGGGCAAGAAAGGAGAGCTGAGCGATGACTAT AGAACTTCCTGGGCAAGAAAAGAGAGCTGAGCGATGACTAT Direct Loss 0.934853232314197 0 NA NA prediction 0.869706464628394 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27024309 chr22:27024309 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6348 0 0 0 0 2 CRYBA4 chr22:27024252 3'AG 27024252 Downstream 58bp 6152 chr22 27024309 27024309 1 + G A SKCM 27024309 + 27024289 27024329 41 AGAACTTCCTGGGCAAGAAAGGAGAGCTGAGCGATGACTAT AGAACTTCCTGGGCAAGAAAAGAGAGCTGAGCGATGACTAT Direct Loss 0.934853232314197 0 NA NA prediction 0.869706464628394 Functional Loss - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27024309 chr22:27024309 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6348 0 0 0 0 2 CRYBA4 chr22:27024394 5'GT 27024394 Upstream 86bp 6153 chr16 56602768 56602768 1 + G A LGG 56602768 + 56602748 56602788 41 TTCAGGCTGCTGTCCCTGCTGCCCCCCGGGCTGTGCCAAAT TTCAGGCTGCTGTCCCTGCTACCCCCCGGGCTGTGCCAAAT Direct Loss 0.934852467333635 0 NA NA prediction 0.869704934667269 Functional Loss - MT4 ENSG00000102891 CDS Human protein_coding chr16:56602768 chr16:56602768 nonsynonymous SNV 0.932 4 21 hm7G_associated_SNPs_6349 0 0 0 0 1 MT4 chr16:56602753 3'AG 56602753 Downstream 16bp 6154 chr10 75671973 75671973 1 - C T UCEC 75671973 - 75671953 75671993 41 CATTTAGACAGTCACAGTTCGCTGGAGAGAACAAAGGTGGG CATTTAGACAGTCACAGTTCACTGGAGAGAACAAAGGTGGG Direct Loss 0.934847983078933 0 NA NA prediction 0.869695966157866 Functional Loss - C10orf55;PLAU ENSG00000122861;ENSG00000222047 CDS Human protein_coding chr10:75671973 chr10:75671973 nonsynonymous SNV 0.308 2 21 hm7G_associated_SNPs_6351 0 0 0 0 2 C10orf55 chr10:75671958 5'GT 75671958 Upstream 16bp 6155 chr10 75671973 75671973 1 - C T UCEC 75671973 - 75671953 75671993 41 CATTTAGACAGTCACAGTTCGCTGGAGAGAACAAAGGTGGG CATTTAGACAGTCACAGTTCACTGGAGAGAACAAAGGTGGG Direct Loss 0.934847983078933 0 NA NA prediction 0.869695966157866 Functional Loss - C10orf55;PLAU ENSG00000122861;ENSG00000222047 CDS Human protein_coding chr10:75671973 chr10:75671973 nonsynonymous SNV 0.308 2 21 hm7G_associated_SNPs_6351 0 0 0 0 2 PLAU chr10:75672042 3'AG 75672042 Downstream 70bp 6156 chr1 170136706 170136706 1 + G A CESC 170136706 + 170136686 170136726 41 GAAAATGGCATCATCATATTGAAGGACAATGTGGCCCGGGA GAAAATGGCATCATCATATTAAAGGACAATGTGGCCCGGGA Direct Loss 0.934841841082174 0 NA NA prediction 0.869683682164348 Functional Loss - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170136706 chr1:170136706 synonymous SNV . 0 21 hm7G_associated_SNPs_6352 0 0 0 0 1 METTL11B chr1:170136627 3'AG 170136627 Downstream 80bp 6157 chrX 115586561 115586561 1 + G A GBM 115586561 + 115586541 115586581 41 AGGATACAGAAATGATGATTGGAGCAAAGAGGTGGATATTC AGGATACAGAAATGATGATTAGAGCAAAGAGGTGGATATTC Direct Loss 0.934835633913257 0 NA NA prediction 0.869671267826515 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115586561 chrX:115586561 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6353 0 0 1 0 2 SLC6A14 chrX:115586523 3'AG 115586523 Downstream 39bp 6158 chrX 115586561 115586561 1 + G A GBM 115586561 + 115586541 115586581 41 AGGATACAGAAATGATGATTGGAGCAAAGAGGTGGATATTC AGGATACAGAAATGATGATTAGAGCAAAGAGGTGGATATTC Direct Loss 0.934835633913257 0 NA NA prediction 0.869671267826515 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115586561 chrX:115586561 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6353 0 0 1 0 2 SLC6A14 chrX:115586632 5'GT 115586632 Upstream 72bp 6159 chr17 73519851 73519851 1 + G A UCEC 73519851 + 73519831 73519871 41 CAAACCCTATGCCCGGATGTGCATTAGTGGGTACGCAGTGA CAAACCCTATGCCCGGATGTACATTAGTGGGTACGCAGTGA Direct Loss 0.934834663488826 0 NA NA prediction 0.869669326977653 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73519851 chr17:73519851 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_6354 0 0 1 0 1 TSEN54 chr17:73519860 5'GT 73519860 Upstream 10bp 6160 chr9 34343136 34343136 1 + G T UCEC 34343136 + 34343116 34343156 41 AACTAGGCCATGTGGAACCAGGAGAGGATGACTTGGAAACA AACTAGGCCATGTGGAACCATGAGAGGATGACTTGGAAACA Direct Loss 0.934831118220456 0 NA NA prediction 0.869662236440913 Functional Loss - NUDT2 ENSG00000164978 CDS Human protein_coding chr9:34343136 chr9:34343136 stopgain 1.000 1 21 hm7G_associated_SNPs_6355 0 0 1 0 1 NUDT2 chr9:34343122 3'AG 34343122 Downstream 15bp 6161 chr3 58279408 58279408 1 + G A STAD 58279408 + 58279388 58279428 41 TGTGGGCACTCAGTAGTGATGGAAAGACCCAGGAAGACAGC TGTGGGCACTCAGTAGTGATAGAAAGACCCAGGAAGACAGC Direct Loss 0.934828490201154 0 NA NA prediction 0.869656980402309 Functional Loss - ABHD6 ENSG00000163686 CDS Human protein_coding chr3:58279408 chr3:58279408 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6356 0 0 0 0 1 ABHD6 chr3:58279316 3'AG 58279316 Downstream 93bp 6162 chr11 67187062 67187062 1 + G T COAD 67187062 + 67187042 67187082 41 GACACAGTGCTGGCGCTGCTGGAGAAGCTGGAGGAGGAGGA GACACAGTGCTGGCGCTGCTTGAGAAGCTGGAGGAGGAGGA Direct Loss 0.934824629167797 0 NA NA prediction 0.869649258335595 Functional Loss - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human protein_coding chr11:67187062 chr11:67187062 nonsynonymous SNV 0.933 1 21 hm7G_associated_SNPs_6357 0 0 0 0 1 CARNS1 chr11:67187132 5'GT 67187132 Upstream 71bp 6163 chr18 20606188 20606188 1 + G A COAD 20606188 + 20606168 20606208 41 ATATTTTCTCCAAAAGGCAAGGAGCAGAAGACATAGACGTT ATATTTTCTCCAAAAGGCAAAGAGCAGAAGACATAGACGTT Direct Loss 0.934821793605979 0 NA NA prediction 0.869643587211958 Functional Loss - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20606188 chr18:20606188 nonsynonymous SNV 0.988 1 21 hm7G_associated_SNPs_6358 0 0 1 0 1 RBBP8 chr18:20606106 3'AG 20606106 Downstream 83bp 6164 chr10 90438259 90438259 1 + G T ESCA 90438259 + 90438239 90438279 41 TACCAATTGCAGTGTGGAACGGTGGCAAGGACCTGTTGGCT TACCAATTGCAGTGTGGAACTGTGGCAAGGACCTGTTGGCT Direct Loss 0.934805314945753 0 NA NA prediction 0.869610629891506 Functional Loss - LIPF ENSG00000182333 CDS Human protein_coding chr10:90438259 chr10:90438259 nonsynonymous SNV 0.144 4 21 hm7G_associated_SNPs_6362 0 0 0 0 1 LIPF chr10:90438202 3'AG 90438202 Downstream 58bp 6165 chr7 95165819 95165819 1 + G T UCEC 95165819 + 95165799 95165839 41 TGCCTATGAACACATCAGATGGAACACAAAGTGGAGAAGAG TGCCTATGAACACATCAGATTGAACACAAAGTGGAGAAGAG Direct Loss 0.934795290098789 0 NA NA prediction 0.869590580197578 Functional Loss - ASB4 ENSG00000005981 CDS Human protein_coding chr7:95165819 chr7:95165819 nonsynonymous SNV 0.953 0 21 hm7G_associated_SNPs_6365 0 0 0 0 2 ASB4 chr7:95165749 3'AG 95165749 Downstream 71bp 6166 chr7 95165819 95165819 1 + G T UCEC 95165819 + 95165799 95165839 41 TGCCTATGAACACATCAGATGGAACACAAAGTGGAGAAGAG TGCCTATGAACACATCAGATTGAACACAAAGTGGAGAAGAG Direct Loss 0.934795290098789 0 NA NA prediction 0.869590580197578 Functional Loss - ASB4 ENSG00000005981 CDS Human protein_coding chr7:95165819 chr7:95165819 nonsynonymous SNV 0.953 0 21 hm7G_associated_SNPs_6365 0 0 0 0 2 ASB4 chr7:95165862 5'GT 95165862 Upstream 44bp 6167 chr20 31424521 31424521 1 + G A BLCA 31424521 + 31424501 31424541 41 GGTTCAAGAAGTTTTTCGATGCAAACTATGATGGAAAAGAC GGTTCAAGAAGTTTTTCGATACAAACTATGATGGAAAAGAC Direct Loss 0.934789571165334 0 NA NA prediction 0.869579142330668 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31424521 chr20:31424521 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6366 0 0 1 0 1 MAPRE1 chr20:31424440 3'AG 31424440 Downstream 82bp 6168 chr3 112064104 112064104 1 + G T UCEC 112064104 + 112064084 112064124 41 AATACCTTTGGTTTTGGGAAGATCTCAGGAACGGCCTGCCT AATACCTTTGGTTTTGGGAATATCTCAGGAACGGCCTGCCT Direct Loss 0.934779158528287 0 NA NA prediction 0.869558317056574 Functional Loss - CD200 ENSG00000091972 CDS Human protein_coding chr3:112064104 chr3:112064104 nonsynonymous SNV 0.890 0 21 hm7G_associated_SNPs_6367 0 0 0 0 1 CD200 chr3:112064135 5'GT 112064135 Upstream 32bp 6169 chr19 855757 855757 1 + G A STAD 855757 + 855737 855777 41 CTGCCGTCGCAGCAACGTCTGCACTCTCGTGAGGGGCCGGC CTGCCGTCGCAGCAACGTCTACACTCTCGTGAGGGGCCGGC Direct Loss 0.934777529483745 0 NA NA prediction 0.869555058967489 Functional Loss - ELANE ENSG00000197561 CDS Human protein_coding chr19:855757 chr19:855757 nonsynonymous SNV 0.036 4 21 hm7G_associated_SNPs_6368 0 0 0 0 1 ELANE chr19:855794 5'GT 855794 Upstream 38bp 6170 chr10 92654638 92654638 1 + G T SARC 92654638 + 92654618 92654658 41 CCTCAATTTGATGCAAATCTGCAAAGGAAAGGTATGGTTCT CCTCAATTTGATGCAAATCTTCAAAGGAAAGGTATGGTTCT Direct Loss 0.934768980514543 0 NA NA prediction 0.869537961029086 Functional Loss - RPP30 ENSG00000148688 CDS Human protein_coding chr10:92654638 chr10:92654638 nonsynonymous SNV 0.983 4 21 hm7G_associated_SNPs_6369 0 0 1 0 1 RPP30 chr10:92654648 5'GT 92654648 Upstream 11bp 6171 chr1 1961159 1961159 1 + G T UCEC 1961159 + 1961139 1961179 41 TTCAACGCCGACTACAGGAAGAAGCAGAAGGCCAAGGTCAA TTCAACGCCGACTACAGGAATAAGCAGAAGGCCAAGGTCAA Direct Loss 0.934752971403712 0 NA NA prediction 0.869505942807424 Functional Loss - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961159 chr1:1961159 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_6372 0 0 0 0 1 GABRD chr1:1961201 5'GT 1961201 Upstream 43bp 6172 chr4 20715094 20715094 1 + G T LUSC 20715094 + 20715074 20715114 41 TGTTTGAAAGAGGATTGAATGCTCTAGTTCAGCTAAGTGTC TGTTTGAAAGAGGATTGAATTCTCTAGTTCAGCTAAGTGTC Direct Loss 0.934747481669395 0 NA NA prediction 0.86949496333879 Functional Loss - PACRGL ENSG00000163138 CDS Human protein_coding chr4:20715094 chr4:20715094 nonsynonymous SNV 0.542 2 21 hm7G_associated_SNPs_6373 0 0 1 0 1 PACRGL chr4:20715055 3'AG 20715055 Downstream 40bp 6173 chr16 67663340 67663340 1 + G C THCA 67663340 + 67663320 67663360 41 CTGATAATTGTGCTGGCCCAGATGGCGTAGAGGGGGAAAAT CTGATAATTGTGCTGGCCCACATGGCGTAGAGGGGGAAAAT Direct Loss 0.934745726060682 0 NA NA prediction 0.869491452121364 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67663340 chr16:67663340 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6374 0 0 1 0 2 CTCF chr16:67663301 3'AG 67663301 Downstream 40bp 6174 chr16 67663340 67663340 1 + G C THCA 67663340 + 67663320 67663360 41 CTGATAATTGTGCTGGCCCAGATGGCGTAGAGGGGGAAAAT CTGATAATTGTGCTGGCCCACATGGCGTAGAGGGGGAAAAT Direct Loss 0.934745726060682 0 NA NA prediction 0.869491452121364 Functional Loss - CTCF ENSG00000102974 CDS Human protein_coding chr16:67663340 chr16:67663340 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6374 0 0 1 0 2 CTCF chr16:67663436 5'GT 67663436 Upstream 97bp 6175 chr22 23503124 23503124 1 + G A BLCA 23503124 + 23503104 23503144 41 CTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCA CTGGCATTCGAGCAGTCGGTACTGCAGGACCTGGAGAGGCA Direct Loss 0.934744285993913 0 NA NA prediction 0.869488571987825 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503124 chr22:23503124 synonymous SNV . 0 21 hm7G_associated_SNPs_6375 0 0 0 0 2 RAB36 chr22:23503066 3'AG 23503066 Downstream 59bp 6176 chr22 23503124 23503124 1 + G A BLCA 23503124 + 23503104 23503144 41 CTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCA CTGGCATTCGAGCAGTCGGTACTGCAGGACCTGGAGAGGCA Direct Loss 0.934744285993913 0 NA NA prediction 0.869488571987825 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503124 chr22:23503124 synonymous SNV . 0 21 hm7G_associated_SNPs_6375 0 0 0 0 2 RAB36 chr22:23503185 5'GT 23503185 Upstream 62bp 6177 chr1 167086707 167086707 1 + G C LUSC 167086707 + 167086687 167086727 41 TATAATACGCCCTGTGTCCTGGACCTACAGCGGGCCCTGGT TATAATACGCCCTGTGTCCTCGACCTACAGCGGGCCCTGGT Direct Loss 0.934732251889536 0 NA NA prediction 0.869464503779072 Functional Loss - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167086707 chr1:167086707 synonymous SNV . 0 21 hm7G_associated_SNPs_6377 0 0 0 0 1 DUSP27 chr1:167086796 5'GT 167086796 Upstream 90bp 6178 chr14 20823048 20823048 1 + G A LIHC 20823048 + 20823028 20823068 41 GTATTCGGGCTGGCCAGCATGGACGAGCTCTCATGGAAGCA GTATTCGGGCTGGCCAGCATAGACGAGCTCTCATGGAAGCA Direct Loss 0.934730424058704 0 NA NA prediction 0.869460848117408 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20823048 chr14:20823048 nonsynonymous SNV 0.965 1 21 hm7G_associated_SNPs_6378 0 0 1 0 2 PARP2 chr14:20822968 3'AG 20822968 Downstream 81bp 6179 chr14 20823048 20823048 1 + G A LIHC 20823048 + 20823028 20823068 41 GTATTCGGGCTGGCCAGCATGGACGAGCTCTCATGGAAGCA GTATTCGGGCTGGCCAGCATAGACGAGCTCTCATGGAAGCA Direct Loss 0.934730424058704 0 NA NA prediction 0.869460848117408 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20823048 chr14:20823048 nonsynonymous SNV 0.965 1 21 hm7G_associated_SNPs_6378 0 0 1 0 2 PARP2 chr14:20823106 5'GT 20823106 Upstream 59bp 6180 chr12 50474336 50474336 1 + G A OV 50474336 + 50474316 50474356 41 TCCTCAACTATGAGACCATTGAACAGAAGAAGGCCTATGAG TCCTCAACTATGAGACCATTAAACAGAAGAAGGCCTATGAG Direct Loss 0.934725502955583 0 NA NA prediction 0.869451005911167 Functional Loss - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50474336 chr12:50474336 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6380 0 0 1 0 2 ASIC1 chr12:50474281 3'AG 50474281 Downstream 56bp 6181 chr12 50474336 50474336 1 + G A OV 50474336 + 50474316 50474356 41 TCCTCAACTATGAGACCATTGAACAGAAGAAGGCCTATGAG TCCTCAACTATGAGACCATTAAACAGAAGAAGGCCTATGAG Direct Loss 0.934725502955583 0 NA NA prediction 0.869451005911167 Functional Loss - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50474336 chr12:50474336 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6380 0 0 1 0 2 ASIC1 chr12:50474372 5'GT 50474372 Upstream 37bp 6182 chr16 84485660 84485660 1 + G A BLCA 84485660 + 84485640 84485680 41 TCTGGTGTGTCTGTGAAGATGATAACGGGGGATGCCCTGGA TCTGGTGTGTCTGTGAAGATAATAACGGGGGATGCCCTGGA Direct Loss 0.934725219772548 0 NA NA prediction 0.869450439545095 Functional Loss - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84485660 chr16:84485660 nonsynonymous SNV 0.434 3 21 hm7G_associated_SNPs_6381 0 0 0 0 1 ATP2C2 chr16:84485697 5'GT 84485697 Upstream 38bp 6183 chr8 363102 363102 1 + G A rs535410177 363102 + 363082 363122 41 GCCATTTTTGGGTCAGGACTGGAGATCTCCTGGATGGAGTT GCCATTTTTGGGTCAGGACTAGAGATCTCCTGGATGGAGTT Direct Loss 0.934720615512916 0 NA NA prediction 0.869441231025832 Functional Loss - FBXO25 ENSG00000147364 CDS Human protein_coding chr8:363102 chr8:363102 stopgain 1.000 1 21 hm7G_associated_SNPs_6383 0 0 1 0 1 FBXO25 chr8:363073 3'AG 363073 Downstream 30bp 6184 chr17 6352705 6352705 1 + G T UCEC 6352705 + 6352685 6352725 41 AGCTGTCCCAAGAGCTAGATGAAGCCATTATGGCGGAAGAG AGCTGTCCCAAGAGCTAGATTAAGCCATTATGGCGGAAGAG Direct Loss 0.934718623007047 0 NA NA prediction 0.869437246014094 Functional Loss - PIMREG ENSG00000129195 CDS Human protein_coding chr17:6352705 chr17:6352705 stopgain 0.409 0 21 hm7G_associated_SNPs_6386 0 0 0 2 2 PIMREG chr17:6352632 3'AG 6352632 Downstream 74bp 6185 chr17 6352705 6352705 1 + G T UCEC 6352705 + 6352685 6352725 41 AGCTGTCCCAAGAGCTAGATGAAGCCATTATGGCGGAAGAG AGCTGTCCCAAGAGCTAGATTAAGCCATTATGGCGGAAGAG Direct Loss 0.934718623007047 0 NA NA prediction 0.869437246014094 Functional Loss - PIMREG ENSG00000129195 CDS Human protein_coding chr17:6352705 chr17:6352705 stopgain 0.409 0 21 hm7G_associated_SNPs_6386 0 0 0 2 2 PIMREG chr17:6352727 5'GT 6352727 Upstream 23bp 6186 chr2 219549951 219549951 1 + G C LUAD 219549951 + 219549931 219549971 41 CTGCATGAAGCTGGAGGGCAGGTAATGGGGAGAAAGACACT CTGCATGAAGCTGGAGGGCACGTAATGGGGAGAAAGACACT Direct Loss 0.934704337069516 0 NA NA prediction 0.869408674139033 Functional Loss - STK36 ENSG00000163482 CDS Human protein_coding chr2:219549951 chr2:219549951 nonsynonymous SNV 0.907 3 21 hm7G_associated_SNPs_6388 0 0 0 0 1 STK36 chr2:219549951 5'GT 219549951 Upstream 1bp 6187 chr20 62896720 62896720 1 + G A BRCA 62896720 + 62896700 62896740 41 CTGGCGTGCAGAAAGAGCATGAAGAGTACATGAAGAATCTT CTGGCGTGCAGAAAGAGCATAAAGAGTACATGAAGAATCTT Direct Loss 0.934699336579293 0 NA NA prediction 0.869398673158585 Functional Loss - PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62896720 chr20:62896720 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_6389 0 0 1 0 1 PCMTD2 chr20:62896782 5'GT 62896782 Upstream 63bp 6188 chr20 9496171 9496171 1 + G T BLCA 9496171 + 9496151 9496191 41 TTTCCACTAACCCTGAAAAAGATATATTTGTGGTGCGGGAA TTTCCACTAACCCTGAAAAATATATATTTGTGGTGCGGGAA Direct Loss 0.934693570151725 0 NA NA prediction 0.86938714030345 Functional Loss - LAMP5 ENSG00000125869 CDS Human protein_coding chr20:9496171 chr20:9496171 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6391 0 0 0 0 1 LAMP5 chr20:9496100 3'AG 9496100 Downstream 72bp 6189 chr2 74184290 74184290 1 + G A rs115206553 74184290 + 74184270 74184310 41 TACCAGAGGGCCAGGGAGGAGGAGAAAGGAATTGAGCTGGC TACCAGAGGGCCAGGGAGGAAGAGAAAGGAATTGAGCTGGC Direct Loss 0.934690067762781 0 NA NA prediction 0.869380135525562 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74184290 chr2:74184290 synonymous SNV . 0 21 hm7G_associated_SNPs_6392 2 0 1 0 2 DGUOK chr2:74184252 3'AG 74184252 Downstream 39bp 6190 chr2 74184290 74184290 1 + G A rs115206553 74184290 + 74184270 74184310 41 TACCAGAGGGCCAGGGAGGAGGAGAAAGGAATTGAGCTGGC TACCAGAGGGCCAGGGAGGAAGAGAAAGGAATTGAGCTGGC Direct Loss 0.934690067762781 0 NA NA prediction 0.869380135525562 Functional Loss - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74184290 chr2:74184290 synonymous SNV . 0 21 hm7G_associated_SNPs_6392 2 0 1 0 2 DGUOK chr2:74184367 5'GT 74184367 Upstream 78bp 6191 chr16 67300058 67300058 1 + G A rs61744117 67300058 + 67300038 67300078 41 GACAGTTCAGAGACAGAGAAGGAGGACGATGAGGGGATCAT GACAGTTCAGAGACAGAGAAAGAGGACGATGAGGGGATCAT Direct Loss 0.934687271307762 0 NA NA prediction 0.869374542615524 Functional Loss - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67300058 chr16:67300058 synonymous SNV . 0 21 hm7G_associated_SNPs_6394 0 0 0 0 2 SLC9A5 chr16:67299991 3'AG 67299991 Downstream 68bp 6192 chr16 67300058 67300058 1 + G A rs61744117 67300058 + 67300038 67300078 41 GACAGTTCAGAGACAGAGAAGGAGGACGATGAGGGGATCAT GACAGTTCAGAGACAGAGAAAGAGGACGATGAGGGGATCAT Direct Loss 0.934687271307762 0 NA NA prediction 0.869374542615524 Functional Loss - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67300058 chr16:67300058 synonymous SNV . 0 21 hm7G_associated_SNPs_6394 0 0 0 0 2 SLC9A5 chr16:67300128 5'GT 67300128 Upstream 71bp 6193 chr1 201966484 201966484 1 + G C CESC 201966484 + 201966464 201966504 41 TGCCACCGTCCTTTCCATTTGGAGGAATGGAGAACCCTTGT TGCCACCGTCCTTTCCATTTCGAGGAATGGAGAACCCTTGT Direct Loss 0.934669952915284 0 NA NA prediction 0.869339905830568 Functional Loss - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201966484 chr1:201966484 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6396 0 0 1 0 1 RNPEP chr1:201966447 3'AG 201966447 Downstream 38bp 6194 chr15 92981790 92981790 1 + G T ESCA 92981790 + 92981770 92981810 41 GTGGGCAACTCGGGGGTCTTGCTGAACAGCGGCTGTGGGCA GTGGGCAACTCGGGGGTCTTTCTGAACAGCGGCTGTGGGCA Direct Loss 0.934656423071292 0 NA NA prediction 0.869312846142585 Functional Loss - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92981790 chr15:92981790 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_6397 0 0 0 0 1 ST8SIA2 chr15:92981840 5'GT 92981840 Upstream 51bp 6195 chr1 230928659 230928659 1 + G A COAD 230928659 + 230928639 230928679 41 CTACCTATGAACTACGGACTGCACTGAAAGCTGCAGGTAAA CTACCTATGAACTACGGACTACACTGAAAGCTGCAGGTAAA Direct Loss 0.934653633872514 0 NA NA prediction 0.869307267745027 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230928659 chr1:230928659 nonsynonymous SNV 0.817 3 21 hm7G_associated_SNPs_6398 0 0 0 0 2 CAPN9 chr1:230928596 3'AG 230928596 Downstream 64bp 6196 chr1 230928659 230928659 1 + G A COAD 230928659 + 230928639 230928679 41 CTACCTATGAACTACGGACTGCACTGAAAGCTGCAGGTAAA CTACCTATGAACTACGGACTACACTGAAAGCTGCAGGTAAA Direct Loss 0.934653633872514 0 NA NA prediction 0.869307267745027 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230928659 chr1:230928659 nonsynonymous SNV 0.817 3 21 hm7G_associated_SNPs_6398 0 0 0 0 2 CAPN9 chr1:230928674 5'GT 230928674 Upstream 16bp 6197 chr1 92595302 92595302 1 + G A HNSC 92595302 + 92595282 92595322 41 TGCTGAGTGGCTGTTGGGCTGAAAGCTCCCAAGAGTACGTT TGCTGAGTGGCTGTTGGGCTAAAAGCTCCCAAGAGTACGTT Direct Loss 0.934646537820503 0 NA NA prediction 0.869293075641006 Functional Loss - BTBD8 ENSG00000189195 CDS Human protein_coding chr1:92595302 chr1:92595302 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6399 0 0 1 0 1 BTBD8 chr1:92595244 3'AG 92595244 Downstream 59bp 6198 chr12 3390947 3390947 1 + G T SARC 3390947 + 3390927 3390967 41 TTCGATGACAATAAGCACGTGCTGGGCACGGTGGGGATGTG TTCGATGACAATAAGCACGTTCTGGGCACGGTGGGGATGTG Direct Loss 0.934637779751408 0 NA NA prediction 0.869275559502817 Functional Loss - TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3390947 chr12:3390947 synonymous SNV . 0 21 hm7G_associated_SNPs_6400 0 0 1 0 2 TSPAN9 chr12:3390900 3'AG 3390900 Downstream 48bp 6199 chr12 3390947 3390947 1 + G T SARC 3390947 + 3390927 3390967 41 TTCGATGACAATAAGCACGTGCTGGGCACGGTGGGGATGTG TTCGATGACAATAAGCACGTTCTGGGCACGGTGGGGATGTG Direct Loss 0.934637779751408 0 NA NA prediction 0.869275559502817 Functional Loss - TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3390947 chr12:3390947 synonymous SNV . 0 21 hm7G_associated_SNPs_6400 0 0 1 0 2 TSPAN9 chr12:3390983 5'GT 3390983 Upstream 37bp 6200 chr17 79639185 79639185 1 + G A LIHC 79639185 + 79639165 79639205 41 AGGAGCGTAAGCAAGGACCAGGTAAGTGGGGCACGGGGACA AGGAGCGTAAGCAAGGACCAAGTAAGTGGGGCACGGGGACA Direct Loss 0.934634413805973 0 NA NA prediction 0.869268827611946 Functional Loss - CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79639185 chr17:79639185 synonymous SNV . 0 21 hm7G_associated_SNPs_6401 0 0 1 0 2 CCDC137 chr17:79639106 3'AG 79639106 Downstream 80bp 6201 chr17 79639185 79639185 1 + G A LIHC 79639185 + 79639165 79639205 41 AGGAGCGTAAGCAAGGACCAGGTAAGTGGGGCACGGGGACA AGGAGCGTAAGCAAGGACCAAGTAAGTGGGGCACGGGGACA Direct Loss 0.934634413805973 0 NA NA prediction 0.869268827611946 Functional Loss - CCDC137 ENSG00000185298 CDS Human protein_coding chr17:79639185 chr17:79639185 synonymous SNV . 0 21 hm7G_associated_SNPs_6401 0 0 1 0 2 CCDC137 chr17:79639185 5'GT 79639185 Upstream 1bp 6202 chr1 45216179 45216179 1 + G A BLCA 45216179 + 45216159 45216199 41 GCATCACGGCTCAGGAGAATGACATGGAGGTGGAGCTGCCT GCATCACGGCTCAGGAGAATAACATGGAGGTGGAGCTGCCT Direct Loss 0.934634370049689 0 NA NA prediction 0.869268740099378 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45216179 chr1:45216179 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_6402 0 0 1 0 2 KIF2C chr1:45216114 3'AG 45216114 Downstream 66bp 6203 chr1 45216179 45216179 1 + G A BLCA 45216179 + 45216159 45216199 41 GCATCACGGCTCAGGAGAATGACATGGAGGTGGAGCTGCCT GCATCACGGCTCAGGAGAATAACATGGAGGTGGAGCTGCCT Direct Loss 0.934634370049689 0 NA NA prediction 0.869268740099378 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45216179 chr1:45216179 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_6402 0 0 1 0 2 KIF2C chr1:45216236 5'GT 45216236 Upstream 58bp 6204 chr7 150417473 150417473 1 + G A SKCM 150417473 + 150417453 150417493 41 TTGGGTCGGTTCACCGCCCAGGACCAGCAGGCGGTGAGGCA TTGGGTCGGTTCACCGCCCAAGACCAGCAGGCGGTGAGGCA Direct Loss 0.934632291338114 0 NA NA prediction 0.869264582676229 Functional Loss - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417473 chr7:150417473 synonymous SNV . 0 21 hm7G_associated_SNPs_6404 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417494 5'GT 150417494 Upstream 22bp 6205 chr7 54612423 54612423 1 + G T LUAD 54612423 + 54612403 54612443 41 GGTGTATCTGGAGATCCAATGGTGGTTCCTGCGGGGGCCGG GGTGTATCTGGAGATCCAATTGTGGTTCCTGCGGGGGCCGG Direct Loss 0.934622812412012 0 NA NA prediction 0.869245624824024 Functional Loss - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54612423 chr7:54612423 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6407 0 0 0 0 1 VSTM2A chr7:54612481 5'GT 54612481 Upstream 59bp 6206 chr16 30035360 30035360 1 + G T OV 30035360 + 30035340 30035380 41 CATCACATCCTGGTGGGCTTGCTGGTGGTGGCGTTCTTCTT CATCACATCCTGGTGGGCTTTCTGGTGGTGGCGTTCTTCTT Direct Loss 0.93460454979836 0 NA NA prediction 0.86920909959672 Functional Loss - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035360 chr16:30035360 nonsynonymous SNV 0.010 0 21 hm7G_associated_SNPs_6410 0 0 0 0 2 C16orf92 chr16:30035320 3'AG 30035320 Downstream 41bp 6207 chr16 30035360 30035360 1 + G T OV 30035360 + 30035340 30035380 41 CATCACATCCTGGTGGGCTTGCTGGTGGTGGCGTTCTTCTT CATCACATCCTGGTGGGCTTTCTGGTGGTGGCGTTCTTCTT Direct Loss 0.93460454979836 0 NA NA prediction 0.86920909959672 Functional Loss - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035360 chr16:30035360 nonsynonymous SNV 0.010 0 21 hm7G_associated_SNPs_6410 0 0 0 0 2 C16orf92 chr16:30035407 5'GT 30035407 Upstream 48bp 6208 chr6 42996873 42996873 1 + G C UCS 42996873 + 42996853 42996893 41 GCTGAGAAGTTCAAGGAGCTGAAACGCAGCAAGAAATTGGA GCTGAGAAGTTCAAGGAGCTCAAACGCAGCAAGAAATTGGA Direct Loss 0.934592932121043 0 NA NA prediction 0.869185864242086 Functional Loss - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42996873 chr6:42996873 synonymous SNV . 0 21 hm7G_associated_SNPs_6411 0 0 1 0 1 RRP36 chr6:42996830 3'AG 42996830 Downstream 44bp 6209 chr10 60154759 60154759 1 + G T UCEC 60154759 + 60154739 60154779 41 AAGTCTTGGGAAGAACAAATGATTGAAGTTGGACGAAAGGA AAGTCTTGGGAAGAACAAATTATTGAAGTTGGACGAAAGGA Direct Loss 0.9345906507368 0 NA NA prediction 0.869181301473601 Functional Loss - TFAM ENSG00000108064 CDS Human protein_coding chr10:60154759 chr10:60154759 nonsynonymous SNV 0.246 4 21 hm7G_associated_SNPs_6413 0 0 1 0 1 TFAM chr10:60154688 3'AG 60154688 Downstream 72bp 6210 chr12 69743944 69743944 1 + G T KIRP 69743944 + 69743924 69743964 41 CACGAGCTACAAACTACAATGCTGGAGACAGAAGCACTGAT CACGAGCTACAAACTACAATTCTGGAGACAGAAGCACTGAT Direct Loss 0.934585886974292 0 NA NA prediction 0.869171773948583 Functional Loss - LYZ ENSG00000090382 CDS Human protein_coding chr12:69743944 chr12:69743944 nonsynonymous SNV 0.034 0 21 hm7G_associated_SNPs_6414 0 0 1 0 1 LYZ chr12:69743888 3'AG 69743888 Downstream 57bp 6211 chr1 192613507 192613507 1 + G T UCEC 192613507 + 192613487 192613527 41 TTTGTAAGATGTGCAGAGATGAATCTAAGAGGCCCCCTTCA TTTGTAAGATGTGCAGAGATTAATCTAAGAGGCCCCCTTCA Direct Loss 0.934566077168895 0 NA NA prediction 0.869132154337789 Functional Loss - RGS13 ENSG00000127074 CDS Human protein_coding chr1:192613507 chr1:192613507 stopgain 0.995 0 21 hm7G_associated_SNPs_6417 0 0 0 0 2 RGS13 chr1:192613461 3'AG 192613461 Downstream 47bp 6212 chr1 192613507 192613507 1 + G T UCEC 192613507 + 192613487 192613527 41 TTTGTAAGATGTGCAGAGATGAATCTAAGAGGCCCCCTTCA TTTGTAAGATGTGCAGAGATTAATCTAAGAGGCCCCCTTCA Direct Loss 0.934566077168895 0 NA NA prediction 0.869132154337789 Functional Loss - RGS13 ENSG00000127074 CDS Human protein_coding chr1:192613507 chr1:192613507 stopgain 0.995 0 21 hm7G_associated_SNPs_6417 0 0 0 0 2 RGS13 chr1:192613529 5'GT 192613529 Upstream 23bp 6213 chr17 45821624 45821624 1 + G A LUAD 45821624 + 45821604 45821644 41 ATATCGTTGAGGTGAACGACGGAGAGCCAGAGGCAGCCTGC ATATCGTTGAGGTGAACGACAGAGAGCCAGAGGCAGCCTGC Direct Loss 0.934561244484592 0 NA NA prediction 0.869122488969184 Functional Loss - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45821624 chr17:45821624 nonsynonymous SNV 0.220 1 21 hm7G_associated_SNPs_6418 0 0 0 0 2 TBX21 chr17:45821561 3'AG 45821561 Downstream 64bp 6214 chr17 45821624 45821624 1 + G A LUAD 45821624 + 45821604 45821644 41 ATATCGTTGAGGTGAACGACGGAGAGCCAGAGGCAGCCTGC ATATCGTTGAGGTGAACGACAGAGAGCCAGAGGCAGCCTGC Direct Loss 0.934561244484592 0 NA NA prediction 0.869122488969184 Functional Loss - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45821624 chr17:45821624 nonsynonymous SNV 0.220 1 21 hm7G_associated_SNPs_6418 0 0 0 0 2 TBX21 chr17:45821719 5'GT 45821719 Upstream 96bp 6215 chr5 644446 644446 1 + G C CESC 644446 + 644426 644466 41 CAACATTTAGATAAATCTTTGGAAGAGAACAGTAGGTTAAA CAACATTTAGATAAATCTTTCGAAGAGAACAGTAGGTTAAA Direct Loss 0.934554279882833 0 NA NA prediction 0.869108559765665 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:644446 chr5:644446 nonsynonymous SNV 0.798 4 21 hm7G_associated_SNPs_6420 0 0 1 0 2 CEP72 chr5:644414 3'AG 644414 Downstream 33bp 6216 chr5 644446 644446 1 + G C CESC 644446 + 644426 644466 41 CAACATTTAGATAAATCTTTGGAAGAGAACAGTAGGTTAAA CAACATTTAGATAAATCTTTCGAAGAGAACAGTAGGTTAAA Direct Loss 0.934554279882833 0 NA NA prediction 0.869108559765665 Functional Loss - CEP72 ENSG00000112877 CDS Human protein_coding chr5:644446 chr5:644446 nonsynonymous SNV 0.798 4 21 hm7G_associated_SNPs_6420 0 0 1 0 2 CEP72 chr5:644540 5'GT 644540 Upstream 95bp 6217 chr1 209955427 209955427 1 + G A SARC 209955427 + 209955407 209955447 41 TGTGGGCGATGGCTCCCAGTGCTGATGGTGGTGATTGCTGC TGTGGGCGATGGCTCCCAGTACTGATGGTGGTGATTGCTGC Direct Loss 0.934539459934213 0 NA NA prediction 0.869078919868425 Functional Loss - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209955427 chr1:209955427 nonsynonymous SNV 0.391 0 21 hm7G_associated_SNPs_6421 0 0 0 0 1 TRAF3IP3 chr1:209955401 3'AG 209955401 Downstream 27bp 6218 chr19 8531138 8531138 1 + G A HNSC 8531138 + 8531118 8531158 41 GCTGGATTATAAAGTTGGCTGGAAGAAACTGAAGGAAGTAT GCTGGATTATAAAGTTGGCTAGAAGAAACTGAAGGAAGTAT Direct Loss 0.934521464213141 0 NA NA prediction 0.869042928426283 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8531138 chr19:8531138 stopgain 1.000 1 21 hm7G_associated_SNPs_6422 0 0 1 0 1 HNRNPM chr19:8531119 3'AG 8531119 Downstream 20bp 6219 chr2 54365795 54365795 1 + G C LUAD 54365795 + 54365775 54365815 41 GTATACAGAAGATGAAGCTAGGAAAATAGGAGTGGTTGGCT GTATACAGAAGATGAAGCTACGAAAATAGGAGTGGTTGGCT Direct Loss 0.934520420316523 0 NA NA prediction 0.869040840633047 Functional Loss - ACYP2 ENSG00000170634 CDS Human protein_coding chr2:54365795 chr2:54365795 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_6423 0 0 1 0 2 ACYP2 chr2:54365776 3'AG 54365776 Downstream 20bp 6220 chr2 54365795 54365795 1 + G C LUAD 54365795 + 54365775 54365815 41 GTATACAGAAGATGAAGCTAGGAAAATAGGAGTGGTTGGCT GTATACAGAAGATGAAGCTACGAAAATAGGAGTGGTTGGCT Direct Loss 0.934520420316523 0 NA NA prediction 0.869040840633047 Functional Loss - ACYP2 ENSG00000170634 CDS Human protein_coding chr2:54365795 chr2:54365795 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_6423 0 0 1 0 2 ACYP2 chr2:54365885 5'GT 54365885 Upstream 91bp 6221 chr7 128412672 128412672 1 - C A GBM 128412672 - 128412652 128412692 41 ATGGTGTGTGGGAAGGCCATGACAGATGAATCCGACACATG ATGGTGTGTGGGAAGGCCATTACAGATGAATCCGACACATG Direct Loss 0.934517489141056 0 NA NA prediction 0.869034978282112 Functional Loss - OPN1SW ENSG00000128617 CDS Human protein_coding chr7:128412672 chr7:128412672 nonsynonymous SNV 0.929 0 21 hm7G_associated_SNPs_6424 0 0 0 0 1 OPN1SW chr7:128412713 3'AG 128412713 Downstream 42bp 6222 chr4 52945915 52945915 1 + G A SKCM 52945915 + 52945895 52945935 41 TCTTTTGTTTTTCAGGATGTGATCCGAGCCATGAATGTCAA TCTTTTGTTTTTCAGGATGTAATCCGAGCCATGAATGTCAA Direct Loss 0.934513792313776 0 NA NA prediction 0.869027584627553 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52945915 chr4:52945915 synonymous SNV . 0 21 hm7G_associated_SNPs_6425 0 0 1 5 1 SPATA18 chr4:52945910 3'AG 52945910 Downstream 6bp 6223 chrX 153001660 153001660 1 + G A UCEC 153001660 + 153001640 153001680 41 ACTATTGCCCGCAACCTCCTGACAGCGGCTGCAGATGCCAT ACTATTGCCCGCAACCTCCTAACAGCGGCTGCAGATGCCAT Direct Loss 0.934512887268719 0 NA NA prediction 0.869025774537438 Functional Loss - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153001660 chrX:153001660 synonymous SNV . 0 21 hm7G_associated_SNPs_6426 0 0 1 0 2 ABCD1 chrX:153001566 3'AG 153001566 Downstream 95bp 6224 chrX 153001660 153001660 1 + G A UCEC 153001660 + 153001640 153001680 41 ACTATTGCCCGCAACCTCCTGACAGCGGCTGCAGATGCCAT ACTATTGCCCGCAACCTCCTAACAGCGGCTGCAGATGCCAT Direct Loss 0.934512887268719 0 NA NA prediction 0.869025774537438 Functional Loss - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153001660 chrX:153001660 synonymous SNV . 0 21 hm7G_associated_SNPs_6426 0 0 1 0 2 ABCD1 chrX:153001708 5'GT 153001708 Upstream 49bp 6225 chr4 128732741 128732741 1 + G T GBM 128732741 + 128732721 128732761 41 TGGAAGGCGATCACAGTGATGCTCCAATGGAGACAGAAACT TGGAAGGCGATCACAGTGATTCTCCAATGGAGACAGAAACT Direct Loss 0.934506413917751 0 NA NA prediction 0.869012827835502 Functional Loss - HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128732741 chr4:128732741 nonsynonymous SNV 0.362 0 21 hm7G_associated_SNPs_6427 0 0 1 0 1 HSPA4L chr4:128732791 5'GT 128732791 Upstream 51bp 6226 chr12 104490161 104490161 1 + G T SARC 104490161 + 104490141 104490181 41 ATGAAACATATGCACTGCCTGCAACGAAGATCAGCCGTGTA ATGAAACATATGCACTGCCTTCAACGAAGATCAGCCGTGTA Direct Loss 0.934501140637564 0 NA NA prediction 0.869002281275127 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104490161 chr12:104490161 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6428 0 0 0 0 2 HCFC2 chr12:104490138 3'AG 104490138 Downstream 24bp 6227 chr12 104490161 104490161 1 + G T SARC 104490161 + 104490141 104490181 41 ATGAAACATATGCACTGCCTGCAACGAAGATCAGCCGTGTA ATGAAACATATGCACTGCCTTCAACGAAGATCAGCCGTGTA Direct Loss 0.934501140637564 0 NA NA prediction 0.869002281275127 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104490161 chr12:104490161 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6428 0 0 0 0 2 HCFC2 chr12:104490211 5'GT 104490211 Upstream 51bp 6228 chr19 41622455 41622455 1 + G A SKCM 41622455 + 41622435 41622475 41 GCTGTGAAGGAGGCCCTGGTGGACCAGGGAGAGGAGTTTAG GCTGTGAAGGAGGCCCTGGTAGACCAGGGAGAGGAGTTTAG Direct Loss 0.93450092232409 0 NA NA prediction 0.86900184464818 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622455 chr19:41622455 synonymous SNV . 0 21 hm7G_associated_SNPs_6429 0 0 0 0 2 CYP2F1 chr19:41622360 3'AG 41622360 Downstream 96bp 6229 chr19 41622455 41622455 1 + G A SKCM 41622455 + 41622435 41622475 41 GCTGTGAAGGAGGCCCTGGTGGACCAGGGAGAGGAGTTTAG GCTGTGAAGGAGGCCCTGGTAGACCAGGGAGAGGAGTTTAG Direct Loss 0.93450092232409 0 NA NA prediction 0.86900184464818 Functional Loss - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622455 chr19:41622455 synonymous SNV . 0 21 hm7G_associated_SNPs_6429 0 0 0 0 2 CYP2F1 chr19:41622522 5'GT 41622522 Upstream 68bp 6230 chr4 53731562 53731562 1 + G T OV 53731562 + 53731542 53731582 41 GGTGCATTCGCTGGGCAGATGCTGTGGTGATCGTTTTCTCC GGTGCATTCGCTGGGCAGATTCTGTGGTGATCGTTTTCTCC Direct Loss 0.934500600832334 0 NA NA prediction 0.869001201664668 Functional Loss - RASL11B ENSG00000128045 CDS Human protein_coding chr4:53731562 chr4:53731562 nonsynonymous SNV 0.643 4 21 hm7G_associated_SNPs_6430 0 0 0 0 1 RASL11B chr4:53731502 3'AG 53731502 Downstream 61bp 6231 chr20 31811717 31811717 1 + G T SKCM 31811717 + 31811697 31811737 41 GCACAAGTGGCCCCAGGGCTGGTGGGCTGGCTAATCAGCGG GCACAAGTGGCCCCAGGGCTTGTGGGCTGGCTAATCAGCGG Direct Loss 0.934499000775905 0 NA NA prediction 0.868998001551809 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31811717 chr20:31811717 synonymous SNV . 0 21 hm7G_associated_SNPs_6431 0 0 0 0 1 BPIFA3 chr20:31811767 5'GT 31811767 Upstream 51bp 6232 chr16 3706139 3706139 1 + G A UCEC 3706139 + 3706119 3706159 41 TATCACTACGTGGTCAGTGAGCCACTGGGACGGAACAGCTA TATCACTACGTGGTCAGTGAACCACTGGGACGGAACAGCTA Direct Loss 0.934497777833362 0 NA NA prediction 0.868995555666724 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706139 chr16:3706139 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_6432 0 0 0 0 2 DNASE1 chr16:3706103 3'AG 3706103 Downstream 37bp 6233 chr16 3706139 3706139 1 + G A UCEC 3706139 + 3706119 3706159 41 TATCACTACGTGGTCAGTGAGCCACTGGGACGGAACAGCTA TATCACTACGTGGTCAGTGAACCACTGGGACGGAACAGCTA Direct Loss 0.934497777833362 0 NA NA prediction 0.868995555666724 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706139 chr16:3706139 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_6432 0 0 0 0 2 DNASE1 chr16:3706186 5'GT 3706186 Upstream 48bp 6234 chr12 100928727 100928727 1 + G A rs180957965 100928727 + 100928707 100928747 41 GAAAAAATGTGAAGCAGCATGCAGATCAGACCGTGAATGAA GAAAAAATGTGAAGCAGCATACAGATCAGACCGTGAATGAA Direct Loss 0.934491691974979 0 NA NA prediction 0.868983383949959 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100928727 chr12:100928727 nonsynonymous SNV 0.924 1 21 hm7G_associated_SNPs_6433 0 0 1 0 1 NR1H4 chr12:100928668 3'AG 100928668 Downstream 60bp 6235 chr15 31115836 31115836 1 + G C rs375887644 31115836 + 31115816 31115856 41 GCCCTGATGCCGGCCGCCATGATCGCCCCGGTGGAGTGCCC GCCCTGATGCCGGCCGCCATCATCGCCCCGGTGGAGTGCCC Direct Loss 0.934486707934504 0 NA NA prediction 0.868973415869008 Functional Loss - HERC2P10 ENSG00000259845 ncRNA_exonic Human unprocessed_pseudogene chr15:31115836 chr15:31115836 . . 0 21 hm7G_associated_SNPs_6434 0 0 0 0 1 HERC2P10 chr15:31115800 3'AG 31115800 Downstream 37bp 6236 chr11 20668449 20668449 1 + G T LUSC 20668449 + 20668429 20668469 41 TAACATCTTCTGGAAAGTCTGCTGGGCATTTGTAACCCCAA TAACATCTTCTGGAAAGTCTTCTGGGCATTTGTAACCCCAA Direct Loss 0.934481852349711 0 NA NA prediction 0.868963704699422 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20668449 chr11:20668449 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6435 0 0 0 0 2 SLC6A5 chr11:20668380 3'AG 20668380 Downstream 70bp 6237 chr11 20668449 20668449 1 + G T LUSC 20668449 + 20668429 20668469 41 TAACATCTTCTGGAAAGTCTGCTGGGCATTTGTAACCCCAA TAACATCTTCTGGAAAGTCTTCTGGGCATTTGTAACCCCAA Direct Loss 0.934481852349711 0 NA NA prediction 0.868963704699422 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20668449 chr11:20668449 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6435 0 0 0 0 2 SLC6A5 chr11:20668480 5'GT 20668480 Upstream 32bp 6238 chr20 31814777 31814777 1 + G A SKCM 31814777 + 31814757 31814797 41 ATCCTCGGGCAGCTGGATGTGAAACTGTTGAAAAGCCTCAT ATCCTCGGGCAGCTGGATGTAAAACTGTTGAAAAGCCTCAT Direct Loss 0.934475996959335 0 NA NA prediction 0.868951993918669 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31814777 chr20:31814777 synonymous SNV . 0 21 hm7G_associated_SNPs_6437 0 0 0 0 2 BPIFA3 chr20:31814736 3'AG 31814736 Downstream 42bp 6239 chr20 31814777 31814777 1 + G A SKCM 31814777 + 31814757 31814797 41 ATCCTCGGGCAGCTGGATGTGAAACTGTTGAAAAGCCTCAT ATCCTCGGGCAGCTGGATGTAAAACTGTTGAAAAGCCTCAT Direct Loss 0.934475996959335 0 NA NA prediction 0.868951993918669 Functional Loss - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31814777 chr20:31814777 synonymous SNV . 0 21 hm7G_associated_SNPs_6437 0 0 0 0 2 BPIFA3 chr20:31814799 5'GT 31814799 Upstream 23bp 6240 chr21 45545915 45545915 1 + G A BRCA 45545915 + 45545895 45545935 41 TTTTTGAACCGAAGAAAAATGACAGAGTTTGGCAACCTGGC TTTTTGAACCGAAGAAAAATAACAGAGTTTGGCAACCTGGC Direct Loss 0.934471968460001 0 NA NA prediction 0.868943936920003 Functional Loss - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45545915 chr21:45545915 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6438 0 0 1 0 2 PWP2 chr21:45545892 3'AG 45545892 Downstream 24bp 6241 chr21 45545915 45545915 1 + G A BRCA 45545915 + 45545895 45545935 41 TTTTTGAACCGAAGAAAAATGACAGAGTTTGGCAACCTGGC TTTTTGAACCGAAGAAAAATAACAGAGTTTGGCAACCTGGC Direct Loss 0.934471968460001 0 NA NA prediction 0.868943936920003 Functional Loss - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45545915 chr21:45545915 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6438 0 0 1 0 2 PWP2 chr21:45546000 5'GT 45546000 Upstream 86bp 6242 chr4 186066920 186066920 1 + G T SARC 186066920 + 186066900 186066940 41 GCTCTGTCCACAGGGATGCTGCCTGACCCCAAGAACGTGCA GCTCTGTCCACAGGGATGCTTCCTGACCCCAAGAACGTGCA Direct Loss 0.934471467552381 0 NA NA prediction 0.868942935104762 Functional Loss - SLC25A4 ENSG00000151729 CDS Human protein_coding chr4:186066920 chr4:186066920 synonymous SNV . 0 21 hm7G_associated_SNPs_6439 0 0 1 0 1 SLC25A4 chr4:186066913 3'AG 186066913 Downstream 8bp 6243 chr2 119738993 119738993 1 + G A SKCM 119738993 + 119738973 119739013 41 TTGGTTTTTCAGGAAGCAAAGGGGACAGGGGCATGAAAGGA TTGGTTTTTCAGGAAGCAAAAGGGACAGGGGCATGAAAGGA Direct Loss 0.934465452955163 0 NA NA prediction 0.868930905910327 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119738993 chr2:119738993 nonsynonymous SNV 0.806 4 21 hm7G_associated_SNPs_6440 0 0 0 0 2 MARCO chr2:119738985 3'AG 119738985 Downstream 9bp 6244 chr2 119738993 119738993 1 + G A SKCM 119738993 + 119738973 119739013 41 TTGGTTTTTCAGGAAGCAAAGGGGACAGGGGCATGAAAGGA TTGGTTTTTCAGGAAGCAAAAGGGACAGGGGCATGAAAGGA Direct Loss 0.934465452955163 0 NA NA prediction 0.868930905910327 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119738993 chr2:119738993 nonsynonymous SNV 0.806 4 21 hm7G_associated_SNPs_6440 0 0 0 0 2 MARCO chr2:119739083 5'GT 119739083 Upstream 91bp 6245 chr19 52729015 52729015 1 + G T PAAD 52729015 + 52728995 52729035 41 ATCCTAGAGAAGCTGACCCAGGACCAGGATGTGGACGTCAA ATCCTAGAGAAGCTGACCCATGACCAGGATGTGGACGTCAA Direct Loss 0.9344637417348 0 NA NA prediction 0.868927483469601 Functional Loss - PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52729015 chr19:52729015 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6441 0 0 1 0 2 PPP2R1A chr19:52728970 3'AG 52728970 Downstream 46bp 6246 chr19 52729015 52729015 1 + G T PAAD 52729015 + 52728995 52729035 41 ATCCTAGAGAAGCTGACCCAGGACCAGGATGTGGACGTCAA ATCCTAGAGAAGCTGACCCATGACCAGGATGTGGACGTCAA Direct Loss 0.9344637417348 0 NA NA prediction 0.868927483469601 Functional Loss - PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52729015 chr19:52729015 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6441 0 0 1 0 2 PPP2R1A chr19:52729061 5'GT 52729061 Upstream 47bp 6247 chr17 80698702 80698702 1 + G T UCEC 80698702 + 80698682 80698722 41 TACAACCAGAAGCTCAGGGAGAAGTTGAAGGAGGAGGAGAA TACAACCAGAAGCTCAGGGATAAGTTGAAGGAGGAGGAGAA Direct Loss 0.934463677537062 0 NA NA prediction 0.868927355074124 Functional Loss - FN3K ENSG00000167363 CDS Human protein_coding chr17:80698702 chr17:80698702 nonsynonymous SNV 0.002 0 21 hm7G_associated_SNPs_6442 0 0 1 0 2 FN3K chr17:80698639 3'AG 80698639 Downstream 64bp 6248 chr17 80698702 80698702 1 + G T UCEC 80698702 + 80698682 80698722 41 TACAACCAGAAGCTCAGGGAGAAGTTGAAGGAGGAGGAGAA TACAACCAGAAGCTCAGGGATAAGTTGAAGGAGGAGGAGAA Direct Loss 0.934463677537062 0 NA NA prediction 0.868927355074124 Functional Loss - FN3K ENSG00000167363 CDS Human protein_coding chr17:80698702 chr17:80698702 nonsynonymous SNV 0.002 0 21 hm7G_associated_SNPs_6442 0 0 1 0 2 FN3K chr17:80698730 5'GT 80698730 Upstream 29bp 6249 chr20 31421642 31421642 1 + G T UCEC 31421642 + 31421622 31421662 41 ACTTCAAAATACTACAAGCAGGTTTTAAGAGAATGGGTGTT ACTTCAAAATACTACAAGCATGTTTTAAGAGAATGGGTGTT Direct Loss 0.93445960684864 0 NA NA prediction 0.868919213697281 Functional Loss - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31421642 chr20:31421642 nonsynonymous SNV 0.925 4 21 hm7G_associated_SNPs_6443 0 0 1 0 1 MAPRE1 chr20:31421668 5'GT 31421668 Upstream 27bp 6250 chr15 49776514 49776514 1 + G A KIRC 49776514 + 49776494 49776534 41 TTTGTTTTAACAGAAAGAATGCAATGAAGATTGTAACTTCA TTTGTTTTAACAGAAAGAATACAATGAAGATTGTAACTTCA Direct Loss 0.934454797591741 0 NA NA prediction 0.868909595183482 Functional Loss - FGF7 ENSG00000140285 CDS Human protein_coding chr15:49776514 chr15:49776514 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6444 0 0 0 0 1 FGF7 chr15:49776507 3'AG 49776507 Downstream 8bp 6251 chr13 76141411 76141411 1 + G T BLCA 76141411 + 76141391 76141431 41 GGAGGAATCTGTGTCAATGAGCCCTGAAGAACGAGCCAGAT GGAGGAATCTGTGTCAATGATCCCTGAAGAACGAGCCAGAT Direct Loss 0.934452533646667 0 NA NA prediction 0.868905067293335 Functional Loss - UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76141411 chr13:76141411 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6445 0 0 1 0 2 UCHL3 chr13:76141363 3'AG 76141363 Downstream 49bp 6252 chr13 76141411 76141411 1 + G T BLCA 76141411 + 76141391 76141431 41 GGAGGAATCTGTGTCAATGAGCCCTGAAGAACGAGCCAGAT GGAGGAATCTGTGTCAATGATCCCTGAAGAACGAGCCAGAT Direct Loss 0.934452533646667 0 NA NA prediction 0.868905067293335 Functional Loss - UCHL3 ENSG00000118939 CDS Human protein_coding chr13:76141411 chr13:76141411 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6445 0 0 1 0 2 UCHL3 chr13:76141448 5'GT 76141448 Upstream 38bp 6253 chr16 2042716 2042716 1 + G A LUAD 2042716 + 2042696 2042736 41 ACGGCGCCAGGGCCGGCCACGACGCAGGCGGGGGACGCGGC ACGGCGCCAGGGCCGGCCACAACGCAGGCGGGGGACGCGGC Direct Loss 0.934451685262937 0 NA NA prediction 0.868903370525875 Functional Loss - SYNGR3 ENSG00000127561 CDS Human protein_coding chr16:2042716 chr16:2042716 nonsynonymous SNV 0.167 0 21 hm7G_associated_SNPs_6446 0 0 1 0 2 SYNGR3 chr16:2042637 3'AG 2042637 Downstream 80bp 6254 chr16 2042716 2042716 1 + G A LUAD 2042716 + 2042696 2042736 41 ACGGCGCCAGGGCCGGCCACGACGCAGGCGGGGGACGCGGC ACGGCGCCAGGGCCGGCCACAACGCAGGCGGGGGACGCGGC Direct Loss 0.934451685262937 0 NA NA prediction 0.868903370525875 Functional Loss - SYNGR3 ENSG00000127561 CDS Human protein_coding chr16:2042716 chr16:2042716 nonsynonymous SNV 0.167 0 21 hm7G_associated_SNPs_6446 0 0 1 0 2 SYNGR3 chr16:2042779 5'GT 2042779 Upstream 64bp 6255 chr9 132482906 132482906 1 + G A LGG 132482906 + 132482886 132482926 41 GAACCGCCGCGCCAAGTTCCGCAGGAATGAAAGGGCCATGC GAACCGCCGCGCCAAGTTCCACAGGAATGAAAGGGCCATGC Direct Loss 0.934448205856163 0 NA NA prediction 0.868896411712325 Functional Loss - PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482906 chr9:132482906 nonsynonymous SNV 0.992 5 21 hm7G_associated_SNPs_6447 0 0 0 0 1 PRRX2 chr9:132482875 3'AG 132482875 Downstream 32bp 6256 chr14 58697142 58697142 1 + G A PAAD 58697142 + 58697122 58697162 41 CAGTTGTGGAAATTCTTTTTGAACAAGATAATGAAGAGCAA CAGTTGTGGAAATTCTTTTTAAACAAGATAATGAAGAGCAA Direct Loss 0.934448176399334 0 NA NA prediction 0.868896352798669 Functional Loss - ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58697142 chr14:58697142 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6448 0 0 1 1 2 ACTR10 chr14:58697117 3'AG 58697117 Downstream 26bp 6257 chr14 58697142 58697142 1 + G A PAAD 58697142 + 58697122 58697162 41 CAGTTGTGGAAATTCTTTTTGAACAAGATAATGAAGAGCAA CAGTTGTGGAAATTCTTTTTAAACAAGATAATGAAGAGCAA Direct Loss 0.934448176399334 0 NA NA prediction 0.868896352798669 Functional Loss - ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58697142 chr14:58697142 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6448 0 0 1 1 2 ACTR10 chr14:58697198 5'GT 58697198 Upstream 57bp 6258 chr1 78395103 78395103 1 + G C BRCA 78395103 + 78395083 78395123 41 AAATGGAAAGGCAAAGAAGAGAAGATGAAAAAAGGAAAGCA AAATGGAAAGGCAAAGAAGACAAGATGAAAAAAGGAAAGCA Direct Loss 0.934440037994509 0 NA NA prediction 0.868880075989019 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78395103 chr1:78395103 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6450 0 0 1 0 1 NEXN chr1:78395189 5'GT 78395189 Upstream 87bp 6259 chr3 36422186 36422186 1 + G A SKCM 36422186 + 36422166 36422206 41 GGCGTGGACGGGCTGCCCAAGGAGGCGGTGGGCGCCGAGCA GGCGTGGACGGGCTGCCCAAAGAGGCGGTGGGCGCCGAGCA Direct Loss 0.934429231904343 0 NA NA prediction 0.868858463808686 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36422186 chr3:36422186 synonymous SNV . 0 21 hm7G_associated_SNPs_6452 0 0 0 0 1 STAC chr3:36422246 5'GT 36422246 Upstream 61bp 6260 chr17 79683042 79683042 1 + G A UCEC 79683042 + 79683022 79683062 41 ACCTGCTTCTGTTTCAGGATGCAGAACGACGTGAAGCTGCC ACCTGCTTCTGTTTCAGGATACAGAACGACGTGAAGCTGCC Direct Loss 0.934426479947397 0 NA NA prediction 0.868852959894794 Functional Loss - SLC25A10 ENSG00000183048;ENSG00000262660 CDS Human other chr17:79683042 chr17:79683042 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_6453 0 0 1 0 2 SLC25A10 chr17:79683039 3'AG 79683039 Downstream 4bp 6261 chr17 79683042 79683042 1 + G A UCEC 79683042 + 79683022 79683062 41 ACCTGCTTCTGTTTCAGGATGCAGAACGACGTGAAGCTGCC ACCTGCTTCTGTTTCAGGATACAGAACGACGTGAAGCTGCC Direct Loss 0.934426479947397 0 NA NA prediction 0.868852959894794 Functional Loss - SLC25A10 ENSG00000183048;ENSG00000262660 CDS Human other chr17:79683042 chr17:79683042 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_6453 0 0 1 0 2 SLC25A10 chr17:79683080 5'GT 79683080 Upstream 39bp 6262 chr1 11718369 11718369 1 + G T KIRC 11718369 + 11718349 11718389 41 TGTGAATGGAGGCGATGAGTGGAAGGTGGAGGATCTCTCTC TGTGAATGGAGGCGATGAGTTGAAGGTGGAGGATCTCTCTC Direct Loss 0.934423350122121 0 NA NA prediction 0.868846700244243 Functional Loss - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718369 chr1:11718369 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_6454 0 0 1 0 3 FBXO44 chr1:11718324 3'AG 11718324 Downstream 46bp 6263 chr1 11718369 11718369 1 + G T KIRC 11718369 + 11718349 11718389 41 TGTGAATGGAGGCGATGAGTGGAAGGTGGAGGATCTCTCTC TGTGAATGGAGGCGATGAGTTGAAGGTGGAGGATCTCTCTC Direct Loss 0.934423350122121 0 NA NA prediction 0.868846700244243 Functional Loss - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718369 chr1:11718369 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_6454 0 0 1 0 3 FBXO44 chr1:11718421 5'GT 11718421 Upstream 53bp 6264 chr1 11718369 11718369 1 + G T KIRC 11718369 + 11718349 11718389 41 TGTGAATGGAGGCGATGAGTGGAAGGTGGAGGATCTCTCTC TGTGAATGGAGGCGATGAGTTGAAGGTGGAGGATCTCTCTC Direct Loss 0.934423350122121 0 NA NA prediction 0.868846700244243 Functional Loss - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718369 chr1:11718369 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_6454 0 0 1 0 3 FBXO44 chr1:11718450 5'GT 11718450 Upstream 82bp 6265 chr2 27900715 27900715 1 + G A SKCM 27900715 + 27900695 27900735 41 AACTTCACCTGAGAACTTTTGAACTGAGGAAAGAACAACAG AACTTCACCTGAGAACTTTTAAACTGAGGAAAGAACAACAG Direct Loss 0.93442068849841 0 NA NA prediction 0.86884137699682 Functional Loss - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27900715 chr2:27900715 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6455 0 0 1 0 1 SLC4A1AP chr2:27900791 5'GT 27900791 Upstream 77bp 6266 chr1 90478719 90478719 1 + G A STAD 90478719 + 90478699 90478739 41 AAAAATGAAGAGGAAGAAAAGCGGCGAATTGAGGCTCGGCG AAAAATGAAGAGGAAGAAAAACGGCGAATTGAGGCTCGGCG Direct Loss 0.934417323924003 0 NA NA prediction 0.868834647848006 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90478719 chr1:90478719 synonymous SNV . 0 21 hm7G_associated_SNPs_6456 0 0 1 0 2 ZNF326 chr1:90478685 3'AG 90478685 Downstream 35bp 6267 chr1 90478719 90478719 1 + G A STAD 90478719 + 90478699 90478739 41 AAAAATGAAGAGGAAGAAAAGCGGCGAATTGAGGCTCGGCG AAAAATGAAGAGGAAGAAAAACGGCGAATTGAGGCTCGGCG Direct Loss 0.934417323924003 0 NA NA prediction 0.868834647848006 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90478719 chr1:90478719 synonymous SNV . 0 21 hm7G_associated_SNPs_6456 0 0 1 0 2 ZNF326 chr1:90478796 5'GT 90478796 Upstream 78bp 6268 chr1 161069266 161069266 1 + G T SARC 161069266 + 161069246 161069286 41 ACTTAGCTGAACCAGAAGTAGCTGGGCATTGGAGTCATGGG ACTTAGCTGAACCAGAAGTATCTGGGCATTGGAGTCATGGG Direct Loss 0.934412410453184 0 NA NA prediction 0.868824820906369 Functional Loss - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161069266 chr1:161069266 nonsynonymous SNV 0.985 4 21 hm7G_associated_SNPs_6458 0 0 1 0 1 KLHDC9 chr1:161069295 5'GT 161069295 Upstream 30bp 6269 chr18 52258559 52258559 1 + G A SKCM 52258559 + 52258539 52258579 41 TATTGAACGTTGAGCACTCTGAAAACCAGCCGGTGAGTGTC TATTGAACGTTGAGCACTCTAAAAACCAGCCGGTGAGTGTC Direct Loss 0.93440886458103 0 NA NA prediction 0.86881772916206 Functional Loss - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52258559 chr18:52258559 nonsynonymous SNV 0.028 0 21 hm7G_associated_SNPs_6459 0 0 0 0 1 DYNAP chr18:52258570 5'GT 52258570 Upstream 12bp 6270 chr20 16717989 16717989 1 + G A LUSC 16717989 + 16717969 16718009 41 AAAGAAAAGAAAAAAGAAAAGAAAAAAGCCAAAACTGTGGA AAAGAAAAGAAAAAAGAAAAAAAAAAAGCCAAAACTGTGGA Direct Loss 0.934405088782628 0 NA NA prediction 0.868810177565256 Functional Loss - SNRPB2 ENSG00000125870 CDS Human protein_coding chr20:16717989 chr20:16717989 synonymous SNV . 0 21 hm7G_associated_SNPs_6460 0 0 0 0 2 SNRPB2 chr20:16717906 3'AG 16717906 Downstream 84bp 6271 chr20 16717989 16717989 1 + G A LUSC 16717989 + 16717969 16718009 41 AAAGAAAAGAAAAAAGAAAAGAAAAAAGCCAAAACTGTGGA AAAGAAAAGAAAAAAGAAAAAAAAAAAGCCAAAACTGTGGA Direct Loss 0.934405088782628 0 NA NA prediction 0.868810177565256 Functional Loss - SNRPB2 ENSG00000125870 CDS Human protein_coding chr20:16717989 chr20:16717989 synonymous SNV . 0 21 hm7G_associated_SNPs_6460 0 0 0 0 2 SNRPB2 chr20:16718046 5'GT 16718046 Upstream 58bp 6272 chr11 1955883 1955883 1 + G A UCEC 1955883 + 1955863 1955903 41 CACCTTGGTGAAGACAAACTGAGGTGAGGGGTGGGTGTTGT CACCTTGGTGAAGACAAACTAAGGTGAGGGGTGGGTGTTGT Direct Loss 0.934398821976746 0 NA NA prediction 0.868797643953491 Functional Loss - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1955883 chr11:1955883 synonymous SNV . 0 21 hm7G_associated_SNPs_6461 0 0 0 0 1 TNNT3 chr11:1955885 5'GT 1955885 Upstream 3bp 6273 chrX 129318306 129318306 1 + G T LUAD 129318306 + 129318286 129318326 41 GAACGTTTCCGCAAAAGCATGGTCGAGCATTACTACCGCAA GAACGTTTCCGCAAAAGCATTGTCGAGCATTACTACCGCAA Direct Loss 0.934398510236568 0 NA NA prediction 0.868797020473135 Functional Loss - RAB33A ENSG00000134594 CDS Human protein_coding chrX:129318306 chrX:129318306 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6462 0 0 0 0 1 RAB33A chrX:129318259 3'AG 129318259 Downstream 48bp 6274 chr14 77935472 77935472 1 + G T SARC 77935472 + 77935452 77935492 41 GACAAGAACGGAGAGACTGAGCTGTGCATGGAAGGTCGAGG GACAAGAACGGAGAGACTGATCTGTGCATGGAAGGTCGAGG Direct Loss 0.934394669714173 0 NA NA prediction 0.868789339428346 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77935472 chr14:77935472 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_6463 0 0 1 0 1 AHSA1 chr14:77935420 3'AG 77935420 Downstream 53bp 6275 chr4 187209686 187209686 1 + G T SKCM 187209686 + 187209666 187209706 41 CACGAGCTGGGGCGAAGGCTGTGCTCAAAGGGAGCGGCCAG CACGAGCTGGGGCGAAGGCTTTGCTCAAAGGGAGCGGCCAG Direct Loss 0.934385074950927 0 NA NA prediction 0.868770149901855 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187209686 chr4:187209686 nonsynonymous SNV 0.986 5 21 hm7G_associated_SNPs_6464 0 0 1 0 1 F11 chr4:187209607 3'AG 187209607 Downstream 80bp 6276 chr3 197678109 197678109 1 + G A STAD 197678109 + 197678089 197678129 41 ACACAGCTCTTCTTAAAATTGAAGGTGTTTACGCCCGAGAT ACACAGCTCTTCTTAAAATTAAAGGTGTTTACGCCCGAGAT Direct Loss 0.934382031937082 0 NA NA prediction 0.868764063874165 Functional Loss - RPL35A ENSG00000182899 CDS Human protein_coding chr3:197678109 chr3:197678109 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_6465 0 0 1 0 2 RPL35A chr3:197678030 3'AG 197678030 Downstream 80bp 6277 chr3 197678109 197678109 1 + G A STAD 197678109 + 197678089 197678129 41 ACACAGCTCTTCTTAAAATTGAAGGTGTTTACGCCCGAGAT ACACAGCTCTTCTTAAAATTAAAGGTGTTTACGCCCGAGAT Direct Loss 0.934382031937082 0 NA NA prediction 0.868764063874165 Functional Loss - RPL35A ENSG00000182899 CDS Human protein_coding chr3:197678109 chr3:197678109 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_6465 0 0 1 0 2 RPL35A chr3:197678182 5'GT 197678182 Upstream 74bp 6278 chr3 62307654 62307654 1 + G A BRCA 62307654 + 62307634 62307674 41 AAATGGAGAATAAATTGGGTGATCAACACACAGAAAAGGCA AAATGGAGAATAAATTGGGTAATCAACACACAGAAAAGGCA Direct Loss 0.934379733407828 0 NA NA prediction 0.868759466815657 Functional Loss - C3orf14 ENSG00000114405 CDS Human protein_coding chr3:62307654 chr3:62307654 nonsynonymous SNV 0.654 0 21 hm7G_associated_SNPs_6466 0 0 1 0 1 C3orf14 chr3:62307728 5'GT 62307728 Upstream 75bp 6279 chr12 52698806 52698806 1 + G A CESC 52698806 + 52698786 52698826 41 ACTTCCTGAGGCGGCTGTATGAGGAGGTGCGGGCTCAGGGG ACTTCCTGAGGCGGCTGTATAAGGAGGTGCGGGCTCAGGGG Direct Loss 0.934378554824126 0 NA NA prediction 0.868757109648252 Functional Loss - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52698806 chr12:52698806 nonsynonymous SNV 0.729 1 21 hm7G_associated_SNPs_6467 0 0 0 0 2 KRT86 chr12:52698716 3'AG 52698716 Downstream 91bp 6280 chr12 52698806 52698806 1 + G A CESC 52698806 + 52698786 52698826 41 ACTTCCTGAGGCGGCTGTATGAGGAGGTGCGGGCTCAGGGG ACTTCCTGAGGCGGCTGTATAAGGAGGTGCGGGCTCAGGGG Direct Loss 0.934378554824126 0 NA NA prediction 0.868757109648252 Functional Loss - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52698806 chr12:52698806 nonsynonymous SNV 0.729 1 21 hm7G_associated_SNPs_6467 0 0 0 0 2 KRT86 chr12:52698811 5'GT 52698811 Upstream 6bp 6281 chr7 116552135 116552135 1 + G T LUAD 116552135 + 116552115 116552155 41 TCTAATAGGTTCATTATTATGAAGATGGTAATGTTCAGCTA TCTAATAGGTTCATTATTATTAAGATGGTAATGTTCAGCTA Direct Loss 0.934378305124274 0 NA NA prediction 0.868756610248549 Functional Loss - CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116552135 chr7:116552135 stopgain 1.000 1 21 hm7G_associated_SNPs_6468 0 0 1 0 2 CAPZA2 chr7:116552123 3'AG 116552123 Downstream 13bp 6282 chr7 116552135 116552135 1 + G T LUAD 116552135 + 116552115 116552155 41 TCTAATAGGTTCATTATTATGAAGATGGTAATGTTCAGCTA TCTAATAGGTTCATTATTATTAAGATGGTAATGTTCAGCTA Direct Loss 0.934378305124274 0 NA NA prediction 0.868756610248549 Functional Loss - CAPZA2 ENSG00000198898 CDS Human protein_coding chr7:116552135 chr7:116552135 stopgain 1.000 1 21 hm7G_associated_SNPs_6468 0 0 1 0 2 CAPZA2 chr7:116552194 5'GT 116552194 Upstream 60bp 6283 chr20 49434762 49434762 1 + G T UCEC 49434762 + 49434742 49434782 41 TTTCAGGCGAAGGAGGTGGAGGAGACCATCGAGGGCATGCT TTTCAGGCGAAGGAGGTGGATGAGACCATCGAGGGCATGCT Direct Loss 0.934371698982758 0 NA NA prediction 0.868743397965515 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49434762 chr20:49434762 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_6469 0 0 0 0 2 BCAS4 chr20:49434748 3'AG 49434748 Downstream 15bp 6284 chr20 49434762 49434762 1 + G T UCEC 49434762 + 49434742 49434782 41 TTTCAGGCGAAGGAGGTGGAGGAGACCATCGAGGGCATGCT TTTCAGGCGAAGGAGGTGGATGAGACCATCGAGGGCATGCT Direct Loss 0.934371698982758 0 NA NA prediction 0.868743397965515 Functional Loss - BCAS4 ENSG00000124243 CDS Human protein_coding chr20:49434762 chr20:49434762 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_6469 0 0 0 0 2 BCAS4 chr20:49434819 5'GT 49434819 Upstream 58bp 6285 chr5 157178450 157178450 1 + G A SKCM 157178450 + 157178430 157178470 41 CGCTGTATCCGTGAGGGGGTGAAGGTGAATGTTCACATCCG CGCTGTATCCGTGAGGGGGTAAAGGTGAATGTTCACATCCG Direct Loss 0.934363393082107 0 NA NA prediction 0.868726786164214 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178450 chr5:157178450 synonymous SNV . 0 21 hm7G_associated_SNPs_6471 0 0 1 0 2 LSM11 chr5:157178398 3'AG 157178398 Downstream 53bp 6286 chr5 157178450 157178450 1 + G A SKCM 157178450 + 157178430 157178470 41 CGCTGTATCCGTGAGGGGGTGAAGGTGAATGTTCACATCCG CGCTGTATCCGTGAGGGGGTAAAGGTGAATGTTCACATCCG Direct Loss 0.934363393082107 0 NA NA prediction 0.868726786164214 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178450 chr5:157178450 synonymous SNV . 0 21 hm7G_associated_SNPs_6471 0 0 1 0 2 LSM11 chr5:157178537 5'GT 157178537 Upstream 88bp 6287 chr17 36863784 36863784 1 + G A BLCA 36863784 + 36863764 36863804 41 ACGGGGCATTGAAGAGGACTGATAATGGAGGTGAGGCGGGC ACGGGGCATTGAAGAGGACTAATAATGGAGGTGAGGCGGGC Direct Loss 0.934363177709432 0 NA NA prediction 0.868726355418865 Functional Loss - MLLT6 ENSG00000108292 CDS Human other chr17:36863784 chr17:36863784 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_6472 0 0 1 0 2 MLLT6 chr17:36863739 3'AG 36863739 Downstream 46bp 6288 chr17 36863784 36863784 1 + G A BLCA 36863784 + 36863764 36863804 41 ACGGGGCATTGAAGAGGACTGATAATGGAGGTGAGGCGGGC ACGGGGCATTGAAGAGGACTAATAATGGAGGTGAGGCGGGC Direct Loss 0.934363177709432 0 NA NA prediction 0.868726355418865 Functional Loss - MLLT6 ENSG00000108292 CDS Human other chr17:36863784 chr17:36863784 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_6472 0 0 1 0 2 MLLT6 chr17:36863793 5'GT 36863793 Upstream 10bp 6289 chr16 28947484 28947484 1 + G C BLCA 28947484 + 28947464 28947504 41 CTCCCACCAGCCCTGGTCCTGAGGAGGAAAAGAAAGCGAAT CTCCCACCAGCCCTGGTCCTCAGGAGGAAAAGAAAGCGAAT Direct Loss 0.934356751647762 0 NA NA prediction 0.868713503295523 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28947484 chr16:28947484 synonymous SNV . 0 21 hm7G_associated_SNPs_6473 0 0 0 0 2 CD19 chr16:28947474 3'AG 28947474 Downstream 11bp 6290 chr16 28947484 28947484 1 + G C BLCA 28947484 + 28947464 28947504 41 CTCCCACCAGCCCTGGTCCTGAGGAGGAAAAGAAAGCGAAT CTCCCACCAGCCCTGGTCCTCAGGAGGAAAAGAAAGCGAAT Direct Loss 0.934356751647762 0 NA NA prediction 0.868713503295523 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28947484 chr16:28947484 synonymous SNV . 0 21 hm7G_associated_SNPs_6473 0 0 0 0 2 CD19 chr16:28947522 5'GT 28947522 Upstream 39bp 6291 chrX 15555263 15555263 1 + G T HNSC 15555263 + 15555243 15555283 41 TCTTGCCTTGTTAGGAATCTGGGAACTGAAAAGAGAAGAGA TCTTGCCTTGTTAGGAATCTTGGAACTGAAAAGAGAAGAGA Direct Loss 0.93435385560289 0 NA NA prediction 0.868707711205781 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15555263 chrX:15555263 nonsynonymous SNV 0.963 4 21 hm7G_associated_SNPs_6474 0 0 0 0 1 BMX chrX:15555257 3'AG 15555257 Downstream 7bp 6292 chr16 3454479 3454479 1 + G T SARC 3454479 + 3454459 3454499 41 TTGGAGAAAACTGGATCTCAGCTTGGAGAACAGGAACTGCC TTGGAGAAAACTGGATCTCATCTTGGAGAACAGGAACTGCC Direct Loss 0.934349820715613 0 NA NA prediction 0.868699641431226 Functional Loss - ZNF174 ENSG00000103343;ENSG00000262621 CDS Human protein_coding chr16:3454479 chr16:3454479 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_6475 0 0 0 0 1 ZNF174 chr16:3454426 3'AG 3454426 Downstream 54bp 6293 chr14 97342379 97342379 1 + G T UCEC 97342379 + 97342359 97342399 41 TATGTAAGAAGCGAAAGAAAGAAATTGAAGAAAGCAAGGAA TATGTAAGAAGCGAAAGAAATAAATTGAAGAAAGCAAGGAA Direct Loss 0.934341876405419 0 NA NA prediction 0.868683752810838 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97342379 chr14:97342379 stopgain 0.844 0 21 hm7G_associated_SNPs_6476 0 0 1 0 2 VRK1 chr14:97342367 3'AG 97342367 Downstream 13bp 6294 chr14 97342379 97342379 1 + G T UCEC 97342379 + 97342359 97342399 41 TATGTAAGAAGCGAAAGAAAGAAATTGAAGAAAGCAAGGAA TATGTAAGAAGCGAAAGAAATAAATTGAAGAAAGCAAGGAA Direct Loss 0.934341876405419 0 NA NA prediction 0.868683752810838 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97342379 chr14:97342379 stopgain 0.844 0 21 hm7G_associated_SNPs_6476 0 0 1 0 2 VRK1 chr14:97342457 5'GT 97342457 Upstream 79bp 6295 chr3 179292203 179292203 1 + G C LUAD 179292203 + 179292183 179292223 41 AACTGACAGAGTTAATGTTTGAACACTACAACATCCCTGCC AACTGACAGAGTTAATGTTTCAACACTACAACATCCCTGCC Direct Loss 0.934341586623366 0 NA NA prediction 0.868683173246733 Functional Loss - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179292203 chr3:179292203 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6477 0 0 1 0 1 ACTL6A chr3:179292158 3'AG 179292158 Downstream 46bp 6296 chr17 72340914 72340914 1 + G A SKCM 72340914 + 72340894 72340934 41 ACCCAGATCATGCAGCTGCTGATGAAGGGGAACCGGCAGAG ACCCAGATCATGCAGCTGCTAATGAAGGGGAACCGGCAGAG Direct Loss 0.934334836584059 0 NA NA prediction 0.868669673168119 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72340914 chr17:72340914 synonymous SNV . 0 21 hm7G_associated_SNPs_6479 0 0 0 0 1 KIF19 chr17:72340900 3'AG 72340900 Downstream 15bp 6297 chr17 28506219 28506219 1 + G C CESC 28506219 + 28506199 28506239 41 AAATGGAAAAGGGGGAGTTTGATGATAAAGAAGCATTTGTG AAATGGAAAAGGGGGAGTTTCATGATAAAGAAGCATTTGTG Direct Loss 0.934330267307988 0 NA NA prediction 0.868660534615976 Functional Loss - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28506219 chr17:28506219 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6480 0 0 1 0 1 NSRP1 chr17:28506315 5'GT 28506315 Upstream 97bp 6298 chr16 30035398 30035398 1 + G A LUAD 30035398 + 30035378 30035418 41 CTTTCTCCTTTTCCAGTTCTGCACCCACATGTAAGGCCTGC CTTTCTCCTTTTCCAGTTCTACACCCACATGTAAGGCCTGC Direct Loss 0.934327576918605 0 NA NA prediction 0.868655153837209 Functional Loss - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035398 chr16:30035398 nonsynonymous SNV 0.694 2 21 hm7G_associated_SNPs_6481 0 0 0 0 2 C16orf92 chr16:30035320 3'AG 30035320 Downstream 79bp 6299 chr16 30035398 30035398 1 + G A LUAD 30035398 + 30035378 30035418 41 CTTTCTCCTTTTCCAGTTCTGCACCCACATGTAAGGCCTGC CTTTCTCCTTTTCCAGTTCTACACCCACATGTAAGGCCTGC Direct Loss 0.934327576918605 0 NA NA prediction 0.868655153837209 Functional Loss - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035398 chr16:30035398 nonsynonymous SNV 0.694 2 21 hm7G_associated_SNPs_6481 0 0 0 0 2 C16orf92 chr16:30035407 5'GT 30035407 Upstream 10bp 6300 chrX 3021865 3021865 1 + G A SKCM 3021865 + 3021845 3021885 41 CAGGAATTGTCCGATGGCCTGGAAAGGTACCAGCTGGACGG CAGGAATTGTCCGATGGCCTAGAAAGGTACCAGCTGGACGG Direct Loss 0.934318441710399 0 NA NA prediction 0.868636883420799 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3021865 chrX:3021865 nonsynonymous SNV 0.022 1 21 hm7G_associated_SNPs_6483 0 0 0 0 1 ARSF chrX:3021803 3'AG 3021803 Downstream 63bp 6301 chr14 90725540 90725540 1 + G C COAD 90725540 + 90725520 90725560 41 GTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGTA GTGGTCATGGTCCTGGAGGTCGCAAGAAGGATGACAAGGTA Direct Loss 0.934298520851103 0 NA NA prediction 0.868597041702206 Functional Loss - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90725540 chr14:90725540 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6485 0 0 0 0 2 PSMC1 chr14:90725504 3'AG 90725504 Downstream 37bp 6302 chr14 90725540 90725540 1 + G C COAD 90725540 + 90725520 90725560 41 GTGGTCATGGTCCTGGAGGTGGCAAGAAGGATGACAAGGTA GTGGTCATGGTCCTGGAGGTCGCAAGAAGGATGACAAGGTA Direct Loss 0.934298520851103 0 NA NA prediction 0.868597041702206 Functional Loss - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90725540 chr14:90725540 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6485 0 0 0 0 2 PSMC1 chr14:90725557 5'GT 90725557 Upstream 18bp 6303 chr1 184023932 184023932 1 + G T CESC 184023932 + 184023912 184023952 41 ATCTGCCTTGTTGGTACTGAGATAGAAGGGGAGGGGTTACA ATCTGCCTTGTTGGTACTGATATAGAAGGGGAGGGGTTACA Direct Loss 0.934296723658878 0 NA NA prediction 0.868593447317755 Functional Loss - TSEN15 ENSG00000198860 CDS Human protein_coding chr1:184023932 chr1:184023932 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6486 0 0 1 0 2 TSEN15 chr1:184023862 3'AG 184023862 Downstream 71bp 6304 chr1 184023932 184023932 1 + G T CESC 184023932 + 184023912 184023952 41 ATCTGCCTTGTTGGTACTGAGATAGAAGGGGAGGGGTTACA ATCTGCCTTGTTGGTACTGATATAGAAGGGGAGGGGTTACA Direct Loss 0.934296723658878 0 NA NA prediction 0.868593447317755 Functional Loss - TSEN15 ENSG00000198860 CDS Human protein_coding chr1:184023932 chr1:184023932 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6486 0 0 1 0 2 TSEN15 chr1:184023997 5'GT 184023997 Upstream 66bp 6305 chr14 23946460 23946460 1 + G T COAD 23946460 + 23946440 23946480 41 TTGAGCGTCAGTAAGCGAGAGAAAGGACGGCGAAAACGAGC TTGAGCGTCAGTAAGCGAGATAAAGGACGGCGAAAACGAGC Direct Loss 0.934281786764196 0 NA NA prediction 0.868563573528392 Functional Loss - NGDN ENSG00000129460 CDS Human protein_coding chr14:23946460 chr14:23946460 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_6487 0 0 1 0 1 NGDN chr14:23946409 3'AG 23946409 Downstream 52bp 6306 chr9 136226881 136226881 1 + G A UCEC 136226881 + 136226861 136226901 41 CCTGCCTGCCTGGTGCACCGGAGGAGGAGGAGGGAGGACCA CCTGCCTGCCTGGTGCACCGAAGGAGGAGGAGGGAGGACCA Direct Loss 0.934280662418996 0 NA NA prediction 0.868561324837991 Functional Loss - SURF2 ENSG00000148291 CDS Human protein_coding chr9:136226881 chr9:136226881 synonymous SNV . 0 21 hm7G_associated_SNPs_6488 0 0 1 0 1 SURF2 chr9:136226826 3'AG 136226826 Downstream 56bp 6307 chr9 104317023 104317023 1 + G T UCEC 104317023 + 104317003 104317043 41 GATCTGGAAGATAAAGAGAAGAAAGAGAACAAGAAAATGGC GATCTGGAAGATAAAGAGAATAAAGAGAACAAGAAAATGGC Direct Loss 0.934280351741313 0 NA NA prediction 0.868560703482626 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104317023 chr9:104317023 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6489 0 0 1 0 1 RNF20 chr9:104316976 3'AG 104316976 Downstream 48bp 6308 chr11 20398183 20398183 1 + G C rs181081777 20398183 + 20398163 20398203 41 AGTCTGCAGAGCTGGCAAAAGCTGGAGGGTGCAAACATTTC AGTCTGCAGAGCTGGCAAAACCTGGAGGGTGCAAACATTTC Direct Loss 0.934278551991477 0 NA NA prediction 0.868557103982953 Functional Loss - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20398183 chr11:20398183 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6490 0 0 1 0 2 HTATIP2 chr11:20398126 3'AG 20398126 Downstream 58bp 6309 chr11 20398183 20398183 1 + G C rs181081777 20398183 + 20398163 20398203 41 AGTCTGCAGAGCTGGCAAAAGCTGGAGGGTGCAAACATTTC AGTCTGCAGAGCTGGCAAAACCTGGAGGGTGCAAACATTTC Direct Loss 0.934278551991477 0 NA NA prediction 0.868557103982953 Functional Loss - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20398183 chr11:20398183 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6490 0 0 1 0 2 HTATIP2 chr11:20398263 5'GT 20398263 Upstream 81bp 6310 chr20 58381200 58381200 1 + G C CESC 58381200 + 58381180 58381220 41 ACATTTTCCCCAGAAGGACTGATGAAGAAAGACAGGAGATC ACATTTTCCCCAGAAGGACTCATGAAGAAAGACAGGAGATC Direct Loss 0.934275063790006 0 NA NA prediction 0.868550127580012 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58381200 chr20:58381200 nonsynonymous SNV 0.788 4 21 hm7G_associated_SNPs_6491 0 0 0 0 1 PHACTR3 chr20:58381249 5'GT 58381249 Upstream 50bp 6311 chr14 77934491 77934491 1 + G T COAD 77934491 + 77934471 77934511 41 AGAGGTGGAAAGTTCCACATGGTAGATGGCAACGTCTCTGG AGAGGTGGAAAGTTCCACATTGTAGATGGCAACGTCTCTGG Direct Loss 0.934261194958431 0 NA NA prediction 0.868522389916863 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77934491 chr14:77934491 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6493 0 0 1 0 2 AHSA1 chr14:77934426 3'AG 77934426 Downstream 66bp 6312 chr14 77934491 77934491 1 + G T COAD 77934491 + 77934471 77934511 41 AGAGGTGGAAAGTTCCACATGGTAGATGGCAACGTCTCTGG AGAGGTGGAAAGTTCCACATTGTAGATGGCAACGTCTCTGG Direct Loss 0.934261194958431 0 NA NA prediction 0.868522389916863 Functional Loss - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77934491 chr14:77934491 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6493 0 0 1 0 2 AHSA1 chr14:77934527 5'GT 77934527 Upstream 37bp 6313 chr7 65617218 65617218 1 + G T ACC 65617218 + 65617198 65617238 41 GTGGAAGAGAGTGAAGAGCGGCTCACGGAGGAGCAGATTGA GTGGAAGAGAGTGAAGAGCGTCTCACGGAGGAGCAGATTGA Direct Loss 0.934261054294933 0 NA NA prediction 0.868522108589867 Functional Loss - CRCP ENSG00000241258;ENSG00000249319 CDS Human other chr7:65617218 chr7:65617218 synonymous SNV . 0 21 hm7G_associated_SNPs_6494 0 0 1 0 1 CRCP chr7:65617195 3'AG 65617195 Downstream 24bp 6314 chrX 107374540 107374540 1 + G A SARC 107374540 + 107374520 107374560 41 GGGGATGTATGCTACGCTGTGGACAGATGATGCTGGCTCAA GGGGATGTATGCTACGCTGTAGACAGATGATGCTGGCTCAA Direct Loss 0.934257492427939 0 NA NA prediction 0.868514984855878 Functional Loss - ATG4A ENSG00000101844 CDS Human protein_coding chrX:107374540 chrX:107374540 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6497 0 0 1 1 2 ATG4A chrX:107374490 3'AG 107374490 Downstream 51bp 6315 chrX 107374540 107374540 1 + G A SARC 107374540 + 107374520 107374560 41 GGGGATGTATGCTACGCTGTGGACAGATGATGCTGGCTCAA GGGGATGTATGCTACGCTGTAGACAGATGATGCTGGCTCAA Direct Loss 0.934257492427939 0 NA NA prediction 0.868514984855878 Functional Loss - ATG4A ENSG00000101844 CDS Human protein_coding chrX:107374540 chrX:107374540 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6497 0 0 1 1 2 ATG4A chrX:107374588 5'GT 107374588 Upstream 49bp 6316 chr10 13151153 13151153 1 + G A rs184878637 13151153 + 13151133 13151173 41 AACCTCTCAGCTGCCTCACTGAAAAGGAGGACAGCCCCAGT AACCTCTCAGCTGCCTCACTAAAAAGGAGGACAGCCCCAGT Direct Loss 0.934256641790496 0 NA NA prediction 0.868513283580991 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13151153 chr10:13151153 nonsynonymous SNV 0.975 2 21 hm7G_associated_SNPs_6498 0 0 1 0 2 OPTN chr10:13151097 3'AG 13151097 Downstream 57bp 6317 chr10 13151153 13151153 1 + G A rs184878637 13151153 + 13151133 13151173 41 AACCTCTCAGCTGCCTCACTGAAAAGGAGGACAGCCCCAGT AACCTCTCAGCTGCCTCACTAAAAAGGAGGACAGCCCCAGT Direct Loss 0.934256641790496 0 NA NA prediction 0.868513283580991 Functional Loss - OPTN ENSG00000123240 CDS Human protein_coding chr10:13151153 chr10:13151153 nonsynonymous SNV 0.975 2 21 hm7G_associated_SNPs_6498 0 0 1 0 2 OPTN chr10:13151112 3'AG 13151112 Downstream 42bp 6318 chr11 68456340 68456340 1 + G C HNSC 68456340 + 68456320 68456360 41 GCTTTGACAGGTCCATACCTGAAAACAATATCATGCGCACA GCTTTGACAGGTCCATACCTCAAAACAATATCATGCGCACA Direct Loss 0.93425468638335 0 NA NA prediction 0.868509372766699 Functional Loss - GAL ENSG00000069482 CDS Human protein_coding chr11:68456340 chr11:68456340 nonsynonymous SNV 0.010 2 21 hm7G_associated_SNPs_6499 0 0 1 0 2 GAL chr11:68456317 3'AG 68456317 Downstream 24bp 6319 chr11 68456340 68456340 1 + G C HNSC 68456340 + 68456320 68456360 41 GCTTTGACAGGTCCATACCTGAAAACAATATCATGCGCACA GCTTTGACAGGTCCATACCTCAAAACAATATCATGCGCACA Direct Loss 0.93425468638335 0 NA NA prediction 0.868509372766699 Functional Loss - GAL ENSG00000069482 CDS Human protein_coding chr11:68456340 chr11:68456340 nonsynonymous SNV 0.010 2 21 hm7G_associated_SNPs_6499 0 0 1 0 2 GAL chr11:68456394 5'GT 68456394 Upstream 55bp 6320 chr22 25627610 25627610 1 + G T UCEC 25627610 + 25627590 25627630 41 CCCGGCTACCGTGGGCTGCAGTACCTGCTGGAGAAGGGAGA CCCGGCTACCGTGGGCTGCATTACCTGCTGGAGAAGGGAGA Direct Loss 0.934246241444347 0 NA NA prediction 0.868492482888694 Functional Loss - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25627610 chr22:25627610 nonsynonymous SNV 0.980 4 21 hm7G_associated_SNPs_6500 0 0 1 0 1 CRYBB2 chr22:25627571 3'AG 25627571 Downstream 40bp 6321 chr11 59560972 59560972 1 + G A GBM 59560972 + 59560952 59560992 41 ATGTTTATGGACATCGCCATGCTGGTGGAGAATCAGGTAAG ATGTTTATGGACATCGCCATACTGGTGGAGAATCAGGTAAG Direct Loss 0.934244004434359 0 NA NA prediction 0.868488008868717 Functional Loss - STX3 ENSG00000166900 CDS Human protein_coding chr11:59560972 chr11:59560972 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6501 0 0 1 0 1 STX3 chr11:59560987 5'GT 59560987 Upstream 16bp 6322 chr14 105398141 105398141 1 + G A LUSC 105398141 + 105398121 105398161 41 CGGGACCTGGAGGCGCTGCTGGCGGTGATGGGGAGCGCCCA CGGGACCTGGAGGCGCTGCTAGCGGTGATGGGGAGCGCCCA Direct Loss 0.934243352891055 0 NA NA prediction 0.86848670578211 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105398141 chr14:105398141 synonymous SNV . 0 21 hm7G_associated_SNPs_6502 0 0 0 0 2 PLD4 chr14:105398085 3'AG 105398085 Downstream 57bp 6323 chr14 105398141 105398141 1 + G A LUSC 105398141 + 105398121 105398161 41 CGGGACCTGGAGGCGCTGCTGGCGGTGATGGGGAGCGCCCA CGGGACCTGGAGGCGCTGCTAGCGGTGATGGGGAGCGCCCA Direct Loss 0.934243352891055 0 NA NA prediction 0.86848670578211 Functional Loss - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105398141 chr14:105398141 synonymous SNV . 0 21 hm7G_associated_SNPs_6502 0 0 0 0 2 PLD4 chr14:105398224 5'GT 105398224 Upstream 84bp 6324 chr21 46363676 46363676 1 + G A KIRC 46363676 + 46363656 46363696 41 TTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTC TTGGTGCAGAAGCTGGAGCTAGACGTGAGGAGTGTCACTTC Direct Loss 0.934241735814083 0 NA NA prediction 0.868483471628166 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46363676 chr21:46363676 synonymous SNV . 0 21 hm7G_associated_SNPs_6503 0 0 1 0 3 FAM207A chr21:46363599 3'AG 46363599 Downstream 78bp 6325 chr21 46363676 46363676 1 + G A KIRC 46363676 + 46363656 46363696 41 TTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTC TTGGTGCAGAAGCTGGAGCTAGACGTGAGGAGTGTCACTTC Direct Loss 0.934241735814083 0 NA NA prediction 0.868483471628166 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46363676 chr21:46363676 synonymous SNV . 0 21 hm7G_associated_SNPs_6503 0 0 1 0 3 FAM207A chr21:46363707 5'GT 46363707 Upstream 32bp 6326 chr21 46363676 46363676 1 + G A KIRC 46363676 + 46363656 46363696 41 TTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTC TTGGTGCAGAAGCTGGAGCTAGACGTGAGGAGTGTCACTTC Direct Loss 0.934241735814083 0 NA NA prediction 0.868483471628166 Functional Loss - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46363676 chr21:46363676 synonymous SNV . 0 21 hm7G_associated_SNPs_6503 0 0 1 0 3 FAM207A chr21:46363752 5'GT 46363752 Upstream 77bp 6327 chr17 73261843 73261843 1 + G C BRCA 73261843 + 73261823 73261863 41 CCATGAAGTGGATGATCACTGAGTGCCGGGATAAAAAGCAC CCATGAAGTGGATGATCACTCAGTGCCGGGATAAAAAGCAC Direct Loss 0.934240655365757 0 NA NA prediction 0.868481310731514 Functional Loss - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73261843 chr17:73261843 nonsynonymous SNV 0.582 3 21 hm7G_associated_SNPs_6504 0 0 1 0 1 MRPS7 chr17:73261783 3'AG 73261783 Downstream 61bp 6328 chr9 71990710 71990710 1 + G T UCEC 71990710 + 71990690 71990730 41 AGAATTTCAACCAGCCAAGTGCACAGACAAAGAAAATGCCT AGAATTTCAACCAGCCAAGTTCACAGACAAAGAAAATGCCT Direct Loss 0.934235302183835 0 NA NA prediction 0.868470604367669 Functional Loss - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:71990710 chr9:71990710 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6506 0 0 1 0 1 FAM189A2 chr9:71990780 5'GT 71990780 Upstream 71bp 6329 chr3 128755873 128755873 1 + G A UCEC 128755873 + 128755853 128755893 41 CACCTGAGGCTGGAGCTGCAGATGGTAGAGACCGAGAGGGT CACCTGAGGCTGGAGCTGCAAATGGTAGAGACCGAGAGGGT Direct Loss 0.934233064672663 0 NA NA prediction 0.868466129345326 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128755873 chr3:128755873 synonymous SNV . 0 21 hm7G_associated_SNPs_6507 0 0 0 0 2 EFCC1 chr3:128755820 3'AG 128755820 Downstream 54bp 6330 chr3 128755873 128755873 1 + G A UCEC 128755873 + 128755853 128755893 41 CACCTGAGGCTGGAGCTGCAGATGGTAGAGACCGAGAGGGT CACCTGAGGCTGGAGCTGCAAATGGTAGAGACCGAGAGGGT Direct Loss 0.934233064672663 0 NA NA prediction 0.868466129345326 Functional Loss - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128755873 chr3:128755873 synonymous SNV . 0 21 hm7G_associated_SNPs_6507 0 0 0 0 2 EFCC1 chr3:128755960 5'GT 128755960 Upstream 88bp 6331 chr3 197483313 197483313 1 + G C LUAD 197483313 + 197483293 197483333 41 ATAGATGATATCATCAAGTTGAATCGAAAGGAAGGGAAGAA ATAGATGATATCATCAAGTTCAATCGAAAGGAAGGGAAGAA Direct Loss 0.934227965809929 0 NA NA prediction 0.868455931619858 Functional Loss - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197483313 chr3:197483313 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_6508 0 0 1 0 1 FYTTD1 chr3:197483297 3'AG 197483297 Downstream 17bp 6332 chrX 49031026 49031026 1 + G A rs146996859 49031026 + 49031006 49031046 41 TTTCCTCACCTGCAGACCCCGCAGATGGCCCGGTGTAGGCG TTTCCTCACCTGCAGACCCCACAGATGGCCCGGTGTAGGCG Direct Loss 0.934219182847564 0 NA NA prediction 0.868438365695128 Functional Loss - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49031026 chrX:49031026 nonsynonymous SNV 0.367 0 21 hm7G_associated_SNPs_6509 0 0 1 0 1 PLP2 chrX:49031021 3'AG 49031021 Downstream 6bp 6333 chr4 187178511 187178511 1 + G T SARC 187178511 + 187178491 187178531 41 ATAAAGAAGGGGGAAAAGATGCTTGTAAGGTAACTCATGAG ATAAAGAAGGGGGAAAAGATTCTTGTAAGGTAACTCATGAG Direct Loss 0.934203117072006 0 NA NA prediction 0.868406234144011 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187178511 chr4:187178511 nonsynonymous SNV 0.530 1 21 hm7G_associated_SNPs_6512 0 0 0 0 1 KLKB1 chr4:187178519 5'GT 187178519 Upstream 9bp 6334 chr4 89385033 89385033 1 + G C SARC 89385033 + 89385013 89385053 41 TGCTGTTTACTTTCGGTGCTGGAAAACATGGGCAACTTGGT TGCTGTTTACTTTCGGTGCTCGAAAACATGGGCAACTTGGT Direct Loss 0.934202864036282 0 NA NA prediction 0.868405728072565 Functional Loss - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89385033 chr4:89385033 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_6513 0 0 1 0 1 HERC5 chr4:89385006 3'AG 89385006 Downstream 28bp 6335 chr16 25232898 25232898 1 + G T OV 25232898 + 25232878 25232918 41 GGGATGCTCGGGGCTGCCTTGGCCAAGGTGGGTAAACCCCA GGGATGCTCGGGGCTGCCTTTGCCAAGGTGGGTAAACCCCA Direct Loss 0.934181995537001 0 NA NA prediction 0.868363991074002 Functional Loss - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25232898 chr16:25232898 nonsynonymous SNV 0.992 2 21 hm7G_associated_SNPs_6516 0 0 0 0 1 AQP8 chr16:25232904 5'GT 25232904 Upstream 7bp 6336 chr15 74239463 74239463 1 + G T LUSC 74239463 + 74239443 74239483 41 ACCTACTGGATGCAGCCACAGGCAAGAAGGTGGCCGAGGGC ACCTACTGGATGCAGCCACATGCAAGAAGGTGGCCGAGGGC Direct Loss 0.934177712072588 0 NA NA prediction 0.868355424145176 Functional Loss - LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74239463 chr15:74239463 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_6518 0 0 0 0 1 LOXL1 chr15:74239408 3'AG 74239408 Downstream 56bp 6337 chr3 119301046 119301046 1 + G T LUSC 119301046 + 119301026 119301066 41 TATGTGGCTGCTATGGTGCTGAGTGCAGCTGGAGATGCCCT TATGTGGCTGCTATGGTGCTTAGTGCAGCTGGAGATGCCCT Direct Loss 0.934177273578003 0 NA NA prediction 0.868354547156005 Functional Loss - ADPRH ENSG00000144843 CDS Human protein_coding chr3:119301046 chr3:119301046 synonymous SNV . 0 21 hm7G_associated_SNPs_6519 0 0 0 0 1 ADPRH chr3:119300981 3'AG 119300981 Downstream 66bp 6338 chr19 52443470 52443470 1 + G A CESC 52443470 + 52443450 52443490 41 CTCTTATTACAGGAATCACTGACCCTGGAGGATGTGGCTGT CTCTTATTACAGGAATCACTAACCCTGGAGGATGTGGCTGT Direct Loss 0.934176489803208 0 NA NA prediction 0.868352979606416 Functional Loss - ZNF613 ENSG00000176024 CDS Human protein_coding chr19:52443470 chr19:52443470 synonymous SNV . 0 21 hm7G_associated_SNPs_6521 0 0 1 0 1 ZNF613 chr19:52443462 3'AG 52443462 Downstream 9bp 6339 chr11 119025273 119025273 1 + G A ESCA 119025273 + 119025253 119025293 41 CTGAGTGAGAAGCAGGAGGTGAAGAAGGAGCTGGTGAGTGG CTGAGTGAGAAGCAGGAGGTAAAGAAGGAGCTGGTGAGTGG Direct Loss 0.934169027908562 0 NA NA prediction 0.868338055817124 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025273 chr11:119025273 synonymous SNV . 0 21 hm7G_associated_SNPs_6523 0 0 0 0 2 ABCG4 chr11:119025235 3'AG 119025235 Downstream 39bp 6340 chr11 119025273 119025273 1 + G A ESCA 119025273 + 119025253 119025293 41 CTGAGTGAGAAGCAGGAGGTGAAGAAGGAGCTGGTGAGTGG CTGAGTGAGAAGCAGGAGGTAAAGAAGGAGCTGGTGAGTGG Direct Loss 0.934169027908562 0 NA NA prediction 0.868338055817124 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025273 chr11:119025273 synonymous SNV . 0 21 hm7G_associated_SNPs_6523 0 0 0 0 2 ABCG4 chr11:119025285 5'GT 119025285 Upstream 13bp 6341 chr7 43846649 43846649 1 + G T LUAD 43846649 + 43846629 43846669 41 TAAGCTTCCATTTCAAGTCTGGGTCCTTGGAGAATGTGCCA TAAGCTTCCATTTCAAGTCTTGGTCCTTGGAGAATGTGCCA Direct Loss 0.934152754197321 0 NA NA prediction 0.868305508394641 Functional Loss - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43846649 chr7:43846649 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_6526 0 0 1 0 1 BLVRA chr7:43846576 3'AG 43846576 Downstream 74bp 6342 chr1 206318421 206318421 1 + G T LUSC 206318421 + 206318401 206318441 41 GATCCAGTTCACCGAGTCCTGCTCAATGGACCAGAGTGCCA GATCCAGTTCACCGAGTCCTTCTCAATGGACCAGAGTGCCA Direct Loss 0.934149768980149 0 NA NA prediction 0.868299537960299 Functional Loss - CTSE ENSG00000196188 CDS Human protein_coding chr1:206318421 chr1:206318421 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_6527 0 0 0 0 1 CTSE chr1:206318467 5'GT 206318467 Upstream 47bp 6343 chr17 79031718 79031718 1 + G T LUAD 79031718 + 79031698 79031738 41 AAAGGCTACTTTGACGCCCTGGTGAAGATGGGGGAGCTGGC AAAGGCTACTTTGACGCCCTTGTGAAGATGGGGGAGCTGGC Direct Loss 0.934148559768638 0 NA NA prediction 0.868297119537277 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031718 chr17:79031718 synonymous SNV . 0 21 hm7G_associated_SNPs_6528 0 0 0 0 2 BAIAP2 chr17:79031681 3'AG 79031681 Downstream 38bp 6344 chr17 79031718 79031718 1 + G T LUAD 79031718 + 79031698 79031738 41 AAAGGCTACTTTGACGCCCTGGTGAAGATGGGGGAGCTGGC AAAGGCTACTTTGACGCCCTTGTGAAGATGGGGGAGCTGGC Direct Loss 0.934148559768638 0 NA NA prediction 0.868297119537277 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79031718 chr17:79031718 synonymous SNV . 0 21 hm7G_associated_SNPs_6528 0 0 0 0 2 BAIAP2 chr17:79031767 5'GT 79031767 Upstream 50bp 6345 chr3 167512493 167512493 1 + G T LUSC 167512493 + 167512473 167512513 41 GGAGATGAAATAAGCATGATGCTGGTGCTGTCCAGACAGGA GGAGATGAAATAAGCATGATTCTGGTGCTGTCCAGACAGGA Direct Loss 0.934147794789226 0 NA NA prediction 0.868295589578453 Functional Loss - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167512493 chr3:167512493 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_6529 0 0 0 0 1 SERPINI1 chr3:167512408 3'AG 167512408 Downstream 86bp 6346 chr15 91433164 91433164 1 + G T STAD 91433164 + 91433144 91433184 41 TGCAACAGGAGCTCCGGAATGAAGAGGAGAACACCCACCCC TGCAACAGGAGCTCCGGAATTAAGAGGAGAACACCCACCCC Direct Loss 0.934147610630313 0 NA NA prediction 0.868295221260625 Functional Loss - FES ENSG00000182511 CDS Human protein_coding chr15:91433164 chr15:91433164 stopgain 0.197 1 21 hm7G_associated_SNPs_6530 0 0 0 0 2 FES chr15:91433070 3'AG 91433070 Downstream 95bp 6347 chr15 91433164 91433164 1 + G T STAD 91433164 + 91433144 91433184 41 TGCAACAGGAGCTCCGGAATGAAGAGGAGAACACCCACCCC TGCAACAGGAGCTCCGGAATTAAGAGGAGAACACCCACCCC Direct Loss 0.934147610630313 0 NA NA prediction 0.868295221260625 Functional Loss - FES ENSG00000182511 CDS Human protein_coding chr15:91433164 chr15:91433164 stopgain 0.197 1 21 hm7G_associated_SNPs_6530 0 0 0 0 2 FES chr15:91433192 5'GT 91433192 Upstream 29bp 6348 chr22 50647001 50647001 1 + G A STAD 50647001 + 50646981 50647021 41 ATTTTTAAGTCTGCAGATGAGCACACAGGGCGTGCAGGCCC ATTTTTAAGTCTGCAGATGAACACACAGGGCGTGCAGGCCC Direct Loss 0.934142988661406 0 NA NA prediction 0.868285977322813 Functional Loss - SELENOO ENSG00000073169 CDS Human antisense chr22:50647001 chr22:50647001 unknown . 0 21 hm7G_associated_SNPs_6532 0 0 1 0 2 SELENOO chr22:50646917 3'AG 50646917 Downstream 85bp 6349 chr22 50647001 50647001 1 + G A STAD 50647001 + 50646981 50647021 41 ATTTTTAAGTCTGCAGATGAGCACACAGGGCGTGCAGGCCC ATTTTTAAGTCTGCAGATGAACACACAGGGCGTGCAGGCCC Direct Loss 0.934142988661406 0 NA NA prediction 0.868285977322813 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50647001 chr22:50647001 unknown . 0 21 hm7G_associated_SNPs_6532 0 0 1 0 2 SELENOO chr22:50646965 3'AG 50646965 Downstream 37bp 6350 chr12 50500700 50500700 1 + G A rs35256655 50500700 + 50500680 50500720 41 GAGATCTGTGGAGCCTTAAAGGTGAGAGGGGCACAGAGGCA GAGATCTGTGGAGCCTTAAAAGTGAGAGGGGCACAGAGGCA Direct Loss 0.934140006994556 0 NA NA prediction 0.868280013989112 Functional Loss - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50500700 chr12:50500700 synonymous SNV . 0 21 hm7G_associated_SNPs_6533 0 0 1 0 1 GPD1 chr12:50500700 5'GT 50500700 Upstream 1bp 6351 chr10 106121820 106121820 1 + G T OV 106121820 + 106121800 106121840 41 AGATGGTGGACTCAGCCTATGACAAAGAGCAGAAGGCCAAG AGATGGTGGACTCAGCCTATTACAAAGAGCAGAAGGCCAAG Direct Loss 0.934130129001549 0 NA NA prediction 0.868260258003099 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121820 chr10:106121820 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_6534 0 0 0 0 1 CFAP58 chr10:106121781 3'AG 106121781 Downstream 40bp 6352 chr16 31539817 31539817 1 + G C LUAD 31539817 + 31539797 31539837 41 GTCTCTGAAGAAGACATGGTGACTGTGGTGGAGGACTGGAT GTCTCTGAAGAAGACATGGTCACTGTGGTGGAGGACTGGAT Direct Loss 0.934126657841043 0 NA NA prediction 0.868253315682087 Functional Loss - AHSP ENSG00000169877 CDS Human protein_coding chr16:31539817 chr16:31539817 synonymous SNV . 0 21 hm7G_associated_SNPs_6535 0 0 1 0 1 AHSP chr16:31539779 3'AG 31539779 Downstream 39bp 6353 chr15 91490107 91490107 1 + G A UCEC 91490107 + 91490087 91490127 41 GCTGAAGGACCTATATAAGTGCAGCGAGAAGGACAGCATCC GCTGAAGGACCTATATAAGTACAGCGAGAAGGACAGCATCC Direct Loss 0.934126234662775 0 NA NA prediction 0.86825246932555 Functional Loss - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91490107 chr15:91490107 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_6536 0 0 1 0 1 UNC45A chr15:91490144 5'GT 91490144 Upstream 38bp 6354 chr20 4680115 4680115 1 + G A STAD 4680115 + 4680095 4680135 41 CATGGTGGTGGCTGGGGACAGCCTCATGGTGGTGGCTGGGG CATGGTGGTGGCTGGGGACAACCTCATGGTGGTGGCTGGGG Direct Loss 0.93412404466683 0 NA NA prediction 0.868248089333659 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680115 chr20:4680115 synonymous SNV . 0 21 hm7G_associated_SNPs_6537 0 0 1 0 1 PRNP chr20:4680125 5'GT 4680125 Upstream 11bp 6355 chr16 70349980 70349980 1 - C T LUSC 70349980 - 70349960 70350000 41 GCTCTTCAAAAGACTTCACCGAGTACAGAGGGGAGTTTGGA GCTCTTCAAAAGACTTCACCAAGTACAGAGGGGAGTTTGGA Direct Loss 0.934108998862522 0 NA NA prediction 0.868217997725045 Functional Loss - DDX19B ENSG00000157349;ENSG00000260537 CDS Human processed_transcript chr16:70349980 chr16:70349980 nonsynonymous SNV 0.939 4 21 hm7G_associated_SNPs_6539 0 0 0 0 1 LOC100506083 chr16:70350045 3'AG 70350045 Downstream 66bp 6356 chr7 44100431 44100431 1 + G C CESC 44100431 + 44100411 44100451 41 CTCATCACGGGCATCGAGGTGATCGACGAAGGCTGGTGGCG CTCATCACGGGCATCGAGGTCATCGACGAAGGCTGGTGGCG Direct Loss 0.934068484813683 0 NA NA prediction 0.868136969627367 Functional Loss - DBNL ENSG00000136279 CDS Human protein_coding chr7:44100431 chr7:44100431 synonymous SNV . 0 21 hm7G_associated_SNPs_6545 0 0 1 0 1 DBNL chr7:44100376 3'AG 44100376 Downstream 56bp 6357 chr3 186917413 186917413 1 + G A UCEC 186917413 + 186917393 186917433 41 CTTCCACATGTTCCTGGACCGCGCCCAGCGGGCGGGCTCGG CTTCCACATGTTCCTGGACCACGCCCAGCGGGCGGGCTCGG Direct Loss 0.934067930043751 0 NA NA prediction 0.868135860087501 Functional Loss - RTP1 ENSG00000175077 CDS Human protein_coding chr3:186917413 chr3:186917413 nonsynonymous SNV 0.349 0 21 hm7G_associated_SNPs_6546 0 0 0 0 1 RTP1 chr3:186917339 3'AG 186917339 Downstream 75bp 6358 chr17 73261847 73261847 1 + G A UCEC 73261847 + 73261827 73261867 41 GAAGTGGATGATCACTGAGTGCCGGGATAAAAAGCACCAGC GAAGTGGATGATCACTGAGTACCGGGATAAAAAGCACCAGC Direct Loss 0.934062681190046 0 NA NA prediction 0.868125362380092 Functional Loss - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73261847 chr17:73261847 nonsynonymous SNV 0.610 4 21 hm7G_associated_SNPs_6547 0 0 1 0 1 MRPS7 chr17:73261783 3'AG 73261783 Downstream 65bp 6359 chr10 124177426 124177426 1 + G A LUSC 124177426 + 124177406 124177446 41 TCTCTGGTAGATGAAAAACTGGAAGAGAAGATATTTTCAAT TCTCTGGTAGATGAAAAACTAGAAGAGAAGATATTTTCAAT Direct Loss 0.934062355973957 0 NA NA prediction 0.868124711947914 Functional Loss - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124177426 chr10:124177426 stopgain 1.000 1 21 hm7G_associated_SNPs_6548 0 0 1 0 2 PLEKHA1 chr10:124177416 3'AG 124177416 Downstream 11bp 6360 chr10 124177426 124177426 1 + G A LUSC 124177426 + 124177406 124177446 41 TCTCTGGTAGATGAAAAACTGGAAGAGAAGATATTTTCAAT TCTCTGGTAGATGAAAAACTAGAAGAGAAGATATTTTCAAT Direct Loss 0.934062355973957 0 NA NA prediction 0.868124711947914 Functional Loss - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124177426 chr10:124177426 stopgain 1.000 1 21 hm7G_associated_SNPs_6548 0 0 1 0 2 PLEKHA1 chr10:124177484 5'GT 124177484 Upstream 59bp 6361 chr19 36369538 36369538 1 + G T BRCA 36369538 + 36369518 36369558 41 AAAGAGAAGATGAACCCGCTGGAACAGTATGAGCGAAAGGT AAAGAGAAGATGAACCCGCTTGAACAGTATGAGCGAAAGGT Direct Loss 0.934055720204654 0 NA NA prediction 0.868111440409307 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36369538 chr19:36369538 synonymous SNV . 0 21 hm7G_associated_SNPs_6550 0 0 0 0 1 APLP1 chr19:36369556 5'GT 36369556 Upstream 19bp 6362 chr5 50685712 50685712 1 + G C BLCA 50685712 + 50685692 50685732 41 AACAAGCGGTGCAAGGACAAGAAGCGAAGCATCATGATGAA AACAAGCGGTGCAAGGACAACAAGCGAAGCATCATGATGAA Direct Loss 0.934051971060771 0 NA NA prediction 0.868103942121543 Functional Loss - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685712 chr5:50685712 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_6551 0 0 0 0 1 ISL1 chr5:50685766 5'GT 50685766 Upstream 55bp 6363 chr16 29858706 29858706 1 + G A HNSC 29858706 + 29858686 29858726 41 GTGGCTGGGCCTGAGATGCAGGTGAGAGTTGGGGAAGGTGT GTGGCTGGGCCTGAGATGCAAGTGAGAGTTGGGGAAGGTGT Direct Loss 0.934044340393929 0 NA NA prediction 0.868088680787859 Functional Loss - MVP ENSG00000013364 CDS Human protein_coding chr16:29858706 chr16:29858706 synonymous SNV . 0 21 hm7G_associated_SNPs_6554 0 0 0 0 1 MVP chr16:29858706 5'GT 29858706 Upstream 1bp 6364 chr17 79502107 79502107 1 + G A ESCA 79502107 + 79502087 79502127 41 TCTCAGCCAATCAGGATGATGAACTAGACCACGAGACCTTC TCTCAGCCAATCAGGATGATAAACTAGACCACGAGACCTTC Direct Loss 0.934041315625043 0 NA NA prediction 0.868082631250086 Functional Loss - FSCN2 ENSG00000186765 CDS Human protein_coding chr17:79502107 chr17:79502107 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_6555 0 0 0 0 1 FSCN2 chr17:79502078 3'AG 79502078 Downstream 30bp 6365 chr19 1037663 1037663 1 + G A BLCA 1037663 + 1037643 1037683 41 GGACCCGGCGGCACATCTATGATACCAAGCTGGGAACCGAC GGACCCGGCGGCACATCTATAATACCAAGCTGGGAACCGAC Direct Loss 0.93404105411051 0 NA NA prediction 0.86808210822102 Functional Loss - CNN2 ENSG00000064666 CDS Human protein_coding chr19:1037663 chr19:1037663 nonsynonymous SNV 0.965 0 21 hm7G_associated_SNPs_6556 0 0 1 0 1 CNN2 chr19:1037624 3'AG 1037624 Downstream 40bp 6366 chr17 40913372 40913372 1 + G A rs560836542 40913372 + 40913352 40913392 41 CTCCGCCTCCTCCTCCTGCTGGGCGGTGAGCGCGGCGCCCC CTCCGCCTCCTCCTCCTGCTAGGCGGTGAGCGCGGCGCCCC Direct Loss 0.93403671742004 0 NA NA prediction 0.868073434840081 Functional Loss - RAMP2 ENSG00000131477 CDS Human protein_coding chr17:40913372 chr17:40913372 synonymous SNV . 0 21 hm7G_associated_SNPs_6557 0 0 0 0 1 RAMP2 chr17:40913376 5'GT 40913376 Upstream 5bp 6367 chr1 91980456 91980456 1 + G T UCEC 91980456 + 91980436 91980476 41 GCTATTTCTACAAAAGTTATGAATAGTGCTGTGATGAGGAA GCTATTTCTACAAAAGTTATTAATAGTGCTGTGATGAGGAA Direct Loss 0.934035560099535 0 NA NA prediction 0.868071120199069 Functional Loss - CDC7 ENSG00000097046 CDS Human protein_coding chr1:91980456 chr1:91980456 nonsynonymous SNV 0.875 0 21 hm7G_associated_SNPs_6558 0 0 1 0 1 CDC7 chr1:91980554 5'GT 91980554 Upstream 99bp 6368 chr15 43632490 43632490 1 + G T rs372787096 43632490 + 43632470 43632510 41 AAGATGTCATAAAAGAATTTGCAGATGACGGCGTCAAGTAC AAGATGTCATAAAAGAATTTTCAGATGACGGCGTCAAGTAC Direct Loss 0.934033471773197 0 NA NA prediction 0.868066943546393 Functional Loss - ADAL ENSG00000168803 CDS Human protein_coding chr15:43632490 chr15:43632490 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6560 0 0 1 0 1 ADAL chr15:43632550 5'GT 43632550 Upstream 61bp 6369 chr5 89802453 89802453 1 + G A GBM 89802453 + 89802433 89802473 41 ATGACGATGACGATGATGCCGCAGAACAGGAGGAATATGAT ATGACGATGACGATGATGCCACAGAACAGGAGGAATATGAT Direct Loss 0.934028507493773 0 NA NA prediction 0.868057014987546 Functional Loss - POLR3G ENSG00000113356 CDS Human protein_coding chr5:89802453 chr5:89802453 nonsynonymous SNV 0.613 1 21 hm7G_associated_SNPs_6561 0 0 1 0 1 POLR3G chr5:89802491 5'GT 89802491 Upstream 39bp 6370 chr3 183859715 183859715 1 + G A KIRC 183859715 + 183859695 183859735 41 CTTCCCATCCTGAGCCAGGTGATAACGTGGTGCTGGACCAG CTTCCCATCCTGAGCCAGGTAATAACGTGGTGCTGGACCAG Direct Loss 0.934028224636393 0 NA NA prediction 0.868056449272787 Functional Loss - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183859715 chr3:183859715 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6562 0 0 1 0 1 EIF2B5 chr3:183859713 3'AG 183859713 Downstream 3bp 6371 chr20 35240503 35240503 1 + G C HNSC 35240503 + 35240483 35240523 41 CCAGTCCAAAGGACCCTCTTGATTACAGCACAGGAACTTGA CCAGTCCAAAGGACCCTCTTCATTACAGCACAGGAACTTGA Direct Loss 0.934026331550722 0 NA NA prediction 0.868052663101443 Functional Loss - C20orf24 ENSG00000101084 CDS Human other chr20:35240503 chr20:35240503 nonsynonymous SNV 0.160 1 21 hm7G_associated_SNPs_6563 0 0 1 1 1 C20orf24;TGIF2-C20orf24 chr20:35240413 3'AG 35240413 Downstream 91bp 6372 chr1 16073399 16073399 1 + G A COAD 16073399 + 16073379 16073419 41 CCCGGCCTGCAGAGCCAGGTGCAGACGGTGCTGGTGCGCAT CCCGGCCTGCAGAGCCAGGTACAGACGGTGCTGGTGCGCAT Direct Loss 0.934025307367275 0 NA NA prediction 0.86805061473455 Functional Loss - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16073399 chr1:16073399 synonymous SNV . 0 21 hm7G_associated_SNPs_6564 0 0 0 0 1 TMEM82 chr1:16073362 3'AG 16073362 Downstream 38bp 6373 chr17 40948000 40948000 1 + G A BRCA 40948000 + 40947980 40948020 41 GAGCAGCGAGGAGTCAGAAAGCAGTGGGGAAGATGAGGAGT GAGCAGCGAGGAGTCAGAAAACAGTGGGGAAGATGAGGAGT Direct Loss 0.93401560765097 0 NA NA prediction 0.868031215301941 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40948000 chr17:40948000 nonsynonymous SNV 0.975 5 21 hm7G_associated_SNPs_6565 0 0 1 0 1 WNK4 chr17:40948051 5'GT 40948051 Upstream 52bp 6374 chr11 65003988 65003988 1 + G T STAD 65003988 + 65003968 65004008 41 GCTGTACCCCACGGAGATCAGGTGGGTGCATGGGGGGAGAT GCTGTACCCCACGGAGATCATGTGGGTGCATGGGGGGAGAT Direct Loss 0.9340130330061 0 NA NA prediction 0.8680260660122 Functional Loss - SLC22A20;POLA2 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:65003988 chr11:65003988 . . 0 21 hm7G_associated_SNPs_6567 0 0 0 0 1 SLC22A20;POLA2 chr11:65003988 5'GT 65003988 Upstream 1bp 6375 chr7 98985735 98985735 1 + G A SKCM 98985735 + 98985715 98985755 41 AACGCCTACGTGTGGACGCTGAAGGGCCGCACATGGAAGCC AACGCCTACGTGTGGACGCTAAAGGGCCGCACATGGAAGCC Direct Loss 0.934002182273451 0 NA NA prediction 0.868004364546901 Functional Loss - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98985735 chr7:98985735 synonymous SNV . 0 21 hm7G_associated_SNPs_6570 0 0 1 0 1 ARPC1B chr7:98985662 3'AG 98985662 Downstream 74bp 6376 chr1 71532495 71532495 1 - C T HNSC 71532495 - 71532475 71532515 41 ATCTTCTTCATCTGGTGATCGCAAAAAAAGACGAACAAGAT ATCTTCTTCATCTGGTGATCACAAAAAAAGACGAACAAGAT Direct Loss 0.933984607935969 0 NA NA prediction 0.867969215871939 Functional Loss - ZRANB2 ENSG00000132485 CDS Human protein_coding chr1:71532495 chr1:71532495 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_6571 0 0 1 0 1 ZRANB2 chr1:71532459 5'GT 71532459 Upstream 37bp 6377 chr6 7403105 7403105 1 + G T UCEC 7403105 + 7403085 7403125 41 AAATGGTGAAAACTTGGGCAGAAAAAGAAATGAGGAACTTA AAATGGTGAAAACTTGGGCATAAAAAGAAATGAGGAACTTA Direct Loss 0.93398364918975 0 NA NA prediction 0.867967298379501 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7403105 chr6:7403105 stopgain 1.000 1 21 hm7G_associated_SNPs_6572 0 0 1 0 1 RIOK1 chr6:7403050 3'AG 7403050 Downstream 56bp 6378 chr1 159557949 159557949 1 + G A SKCM 159557949 + 159557929 159557969 41 GTTACTGATCATGTAAACTTGATCACACCGCTGGAGAAGCC GTTACTGATCATGTAAACTTAATCACACCGCTGGAGAAGCC Direct Loss 0.93396586802247 0 NA NA prediction 0.867931736044939 Functional Loss - APCS ENSG00000132703 CDS Human protein_coding chr1:159557949 chr1:159557949 synonymous SNV . 0 21 hm7G_associated_SNPs_6575 0 0 0 0 1 APCS chr1:159557891 3'AG 159557891 Downstream 59bp 6379 chr1 203465175 203465175 1 + G T COAD 203465175 + 203465155 203465195 41 AGTCTGCTGGCCTTGGTGCTGCAGGAGACAGGGACAGCTTC AGTCTGCTGGCCTTGGTGCTTCAGGAGACAGGGACAGCTTC Direct Loss 0.933960320153218 0 NA NA prediction 0.867920640306437 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203465175 chr1:203465175 synonymous SNV . 0 21 hm7G_associated_SNPs_6576 0 0 0 0 1 OPTC chr1:203465093 3'AG 203465093 Downstream 83bp 6380 chr2 169707602 169707602 1 + G A SKCM 169707602 + 169707582 169707622 41 CATTCTTTTCAGAGCATTCTGGAGCTGGAGAAGGAAAGAAT CATTCTTTTCAGAGCATTCTAGAGCTGGAGAAGGAAAGAAT Direct Loss 0.933957381027928 0 NA NA prediction 0.867914762055855 Functional Loss - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169707602 chr2:169707602 synonymous SNV . 0 21 hm7G_associated_SNPs_6578 0 0 1 0 2 NOSTRIN chr2:169707594 3'AG 169707594 Downstream 9bp 6381 chr2 169707602 169707602 1 + G A SKCM 169707602 + 169707582 169707622 41 CATTCTTTTCAGAGCATTCTGGAGCTGGAGAAGGAAAGAAT CATTCTTTTCAGAGCATTCTAGAGCTGGAGAAGGAAAGAAT Direct Loss 0.933957381027928 0 NA NA prediction 0.867914762055855 Functional Loss - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169707602 chr2:169707602 synonymous SNV . 0 21 hm7G_associated_SNPs_6578 0 0 1 0 2 NOSTRIN chr2:169707692 5'GT 169707692 Upstream 91bp 6382 chr11 67250649 67250649 1 + G C BLCA 67250649 + 67250629 67250669 41 GATGGCGGATATCATCGCAAGACTCCGGGAGGACGGGATCC GATGGCGGATATCATCGCAACACTCCGGGAGGACGGGATCC Direct Loss 0.93395294805204 0 NA NA prediction 0.86790589610408 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67250649 chr11:67250649 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6579 0 0 1 0 1 AIP chr11:67250728 5'GT 67250728 Upstream 80bp 6383 chr19 22785437 22785437 1 + G T HNSC 22785437 + 22785417 22785457 41 CAGCTGATGCAGGAAAAGGTGGACCTGAAAGAGCGGGTGGA CAGCTGATGCAGGAAAAGGTTGACCTGAAAGAGCGGGTGGA Direct Loss 0.9339414638895 0 NA NA prediction 0.867882927778999 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785437 chr19:22785437 . . 0 21 hm7G_associated_SNPs_6582 0 0 0 0 2 GOLGA2P9 chr19:22785405 3'AG 22785405 Downstream 33bp 6384 chr19 22785437 22785437 1 + G T HNSC 22785437 + 22785417 22785457 41 CAGCTGATGCAGGAAAAGGTGGACCTGAAAGAGCGGGTGGA CAGCTGATGCAGGAAAAGGTTGACCTGAAAGAGCGGGTGGA Direct Loss 0.9339414638895 0 NA NA prediction 0.867882927778999 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785437 chr19:22785437 . . 0 21 hm7G_associated_SNPs_6582 0 0 0 0 2 GOLGA2P9 chr19:22785507 5'GT 22785507 Upstream 71bp 6385 chr11 75511469 75511469 1 + G A rs34113941 75511469 + 75511449 75511489 41 ATCGACCTGTACCACACCATGTACATGGAGGCCCTGGTGAA ATCGACCTGTACCACACCATATACATGGAGGCCCTGGTGAA Direct Loss 0.933932613622536 0 NA NA prediction 0.867865227245072 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75511469 chr11:75511469 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6584 0 0 1 0 1 DGAT2 chr11:75511399 3'AG 75511399 Downstream 71bp 6386 chr20 29960684 29960684 1 + G T LUSC 29960684 + 29960664 29960704 41 TAGTGGTGAAAAAAAATGCTGGAACAGATCAGGGCACTGCA TAGTGGTGAAAAAAAATGCTTGAACAGATCAGGGCACTGCA Direct Loss 0.933923511375899 0 NA NA prediction 0.867847022751798 Functional Loss - DEFB118 ENSG00000131068 CDS Human protein_coding chr20:29960684 chr20:29960684 nonsynonymous SNV 0.049 0 21 hm7G_associated_SNPs_6585 0 0 0 0 1 DEFB118 chr20:29960660 3'AG 29960660 Downstream 25bp 6387 chr14 24528595 24528595 1 + G A BLCA 24528595 + 24528575 24528615 41 GATCTGAGCGGCAATGGCATGGAGGACATCGGGGCCAAGAT GATCTGAGCGGCAATGGCATAGAGGACATCGGGGCCAAGAT Direct Loss 0.933915331074803 0 NA NA prediction 0.867830662149605 Functional Loss - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24528595 chr14:24528595 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6588 0 0 1 0 1 CARMIL3 chr14:24528651 5'GT 24528651 Upstream 57bp 6388 chr9 131847848 131847848 1 + G A UCEC 131847848 + 131847828 131847868 41 GACTTGCTGTGGAGGCACGTGCTCTCCCTGGGACTCCTCGC GACTTGCTGTGGAGGCACGTACTCTCCCTGGGACTCCTCGC Direct Loss 0.933912755813796 0 NA NA prediction 0.867825511627593 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847848 chr9:131847848 synonymous SNV . 0 21 hm7G_associated_SNPs_6589 0 0 1 0 2 DOLPP1 chr9:131847797 3'AG 131847797 Downstream 52bp 6389 chr9 131847848 131847848 1 + G A UCEC 131847848 + 131847828 131847868 41 GACTTGCTGTGGAGGCACGTGCTCTCCCTGGGACTCCTCGC GACTTGCTGTGGAGGCACGTACTCTCCCTGGGACTCCTCGC Direct Loss 0.933912755813796 0 NA NA prediction 0.867825511627593 Functional Loss - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847848 chr9:131847848 synonymous SNV . 0 21 hm7G_associated_SNPs_6589 0 0 1 0 2 DOLPP1 chr9:131847895 5'GT 131847895 Upstream 48bp 6390 chr20 44421339 44421339 1 + G A UCEC 44421339 + 44421319 44421359 41 CCTTGGAACATAATGATAAAGCACCGGCAGGTGCAGCGGAG CCTTGGAACATAATGATAAAACACCGGCAGGTGCAGCGGAG Direct Loss 0.93391164325637 0 NA NA prediction 0.867823286512741 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44421339 chr20:44421339 synonymous SNV . 0 21 hm7G_associated_SNPs_6590 0 0 0 0 2 DNTTIP1 chr20:44421316 3'AG 44421316 Downstream 24bp 6391 chr20 44421339 44421339 1 + G A UCEC 44421339 + 44421319 44421359 41 CCTTGGAACATAATGATAAAGCACCGGCAGGTGCAGCGGAG CCTTGGAACATAATGATAAAACACCGGCAGGTGCAGCGGAG Direct Loss 0.93391164325637 0 NA NA prediction 0.867823286512741 Functional Loss - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44421339 chr20:44421339 synonymous SNV . 0 21 hm7G_associated_SNPs_6590 0 0 0 0 2 DNTTIP1 chr20:44421386 5'GT 44421386 Upstream 48bp 6392 chr7 21516717 21516717 1 + G C LUAD 21516717 + 21516697 21516737 41 GTCAGCAGCAAGGACAAGATGGAGTAAAAGTCCAGCAAGCT GTCAGCAGCAAGGACAAGATCGAGTAAAAGTCCAGCAAGCT Direct Loss 0.93390899706922 0 NA NA prediction 0.86781799413844 Functional Loss - SP4 ENSG00000105866 CDS Human protein_coding chr7:21516717 chr7:21516717 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6591 0 0 1 0 1 SP4 chr7:21516697 3'AG 21516697 Downstream 21bp 6393 chr17 37821715 37821715 1 + G A PRAD 37821715 + 37821695 37821735 41 TGACACTGTCCACACGGCCCGAGGAGGGGTGAGTGTGGGTC TGACACTGTCCACACGGCCCAAGGAGGGGTGAGTGTGGGTC Direct Loss 0.933903217867044 0 NA NA prediction 0.867806435734088 Functional Loss - TCAP ENSG00000173991 CDS Human protein_coding chr17:37821715 chr17:37821715 nonsynonymous SNV 0.931 4 21 hm7G_associated_SNPs_6592 0 0 0 0 1 TCAP chr17:37821722 5'GT 37821722 Upstream 8bp 6394 chr5 76173537 76173537 1 + G T ACC 76173537 + 76173517 76173557 41 TTGGTTGATAAGATAGTGCAGGACCTGGATGCCAATAAGGA TTGGTTGATAAGATAGTGCATGACCTGGATGCCAATAAGGA Direct Loss 0.933901052536166 0 NA NA prediction 0.867802105072332 Functional Loss - S100Z ENSG00000171643 CDS Human protein_coding chr5:76173537 chr5:76173537 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6594 0 0 0 0 1 S100Z chr5:76173499 3'AG 76173499 Downstream 39bp 6395 chr19 18685771 18685771 1 + G A BLCA 18685771 + 18685751 18685791 41 AAATACAACTGCGACAAGATGATCTGCCGCAAGTATGTGTG AAATACAACTGCGACAAGATAATCTGCCGCAAGTATGTGTG Direct Loss 0.933896479986886 0 NA NA prediction 0.867792959973771 Functional Loss - UBA52 ENSG00000221983 CDS Human protein_coding chr19:18685771 chr19:18685771 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6595 0 0 1 0 1 UBA52 chr19:18685782 5'GT 18685782 Upstream 12bp 6396 chr11 67196049 67196049 1 + G A rs35363135 67196049 + 67196029 67196069 41 TTTGATTTGGATTTGGAGACGGAGGAAGGCAGCGAGGGCGA TTTGATTTGGATTTGGAGACAGAGGAAGGCAGCGAGGGCGA Direct Loss 0.933886331345812 0 NA NA prediction 0.867772662691625 Functional Loss - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67196049 chr11:67196049 synonymous SNV . 0 21 hm7G_associated_SNPs_6599 0 0 1 0 1 RPS6KB2 chr11:67196094 5'GT 67196094 Upstream 46bp 6397 chr11 1972198 1972198 1 + G T LUAD 1972198 + 1972178 1972218 41 AACTTCTTCATTCAGCTGGTGCGGCCCGGTGTGGCCCAGCC AACTTCTTCATTCAGCTGGTTCGGCCCGGTGTGGCCCAGCC Direct Loss 0.933878660532638 0 NA NA prediction 0.867757321065276 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1972198 chr11:1972198 synonymous SNV . 0 21 hm7G_associated_SNPs_6600 0 0 1 0 2 MRPL23 chr11:1972129 3'AG 1972129 Downstream 70bp 6398 chr11 1972198 1972198 1 + G T LUAD 1972198 + 1972178 1972218 41 AACTTCTTCATTCAGCTGGTGCGGCCCGGTGTGGCCCAGCC AACTTCTTCATTCAGCTGGTTCGGCCCGGTGTGGCCCAGCC Direct Loss 0.933878660532638 0 NA NA prediction 0.867757321065276 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1972198 chr11:1972198 synonymous SNV . 0 21 hm7G_associated_SNPs_6600 0 0 1 0 2 MRPL23 chr11:1972251 5'GT 1972251 Upstream 54bp 6399 chr14 93684917 93684917 1 + G C LAML 93684917 + 93684897 93684937 41 ATGGATTGGTGCGGAACATTGATGGAATAGGTGATCAGGAA ATGGATTGGTGCGGAACATTCATGGAATAGGTGATCAGGAA Direct Loss 0.933869896971753 0 NA NA prediction 0.867739793943507 Functional Loss - UBR7 ENSG00000012963 CDS Human protein_coding chr14:93684917 chr14:93684917 nonsynonymous SNV 0.721 0 21 hm7G_associated_SNPs_6601 0 0 1 0 1 UBR7 chr14:93684873 3'AG 93684873 Downstream 45bp 6400 chrX 1761794 1761794 1 + G A SKCM 1761794 + 1761774 1761814 41 ACATGCTTGTGCAGACGGAAGGGCAGGAGAGGACCCCCACC ACATGCTTGTGCAGACGGAAAGGCAGGAGAGGACCCCCACC Direct Loss 0.933866874370594 0 NA NA prediction 0.867733748741188 Functional Loss - ASMT ENSG00000196433 CDS Human protein_coding chrX:1761794 chrX:1761794 nonsynonymous SNV 0.449 3 21 hm7G_associated_SNPs_6602 0 0 0 0 1 ASMT chrX:1761696 3'AG 1761696 Downstream 99bp 6401 chr6 112386105 112386105 1 + G T SKCM 112386105 + 112386085 112386125 41 AAAGCTGGCTGGCAGTCACTGCTCTGGAGCTAAAGGTGGAA AAAGCTGGCTGGCAGTCACTTCTCTGGAGCTAAAGGTGGAA Direct Loss 0.933856568736271 0 NA NA prediction 0.867713137472542 Functional Loss - WISP3 ENSG00000112761 CDS Human protein_coding chr6:112386105 chr6:112386105 nonsynonymous SNV 0.768 4 21 hm7G_associated_SNPs_6603 0 0 0 0 1 WISP3 chr6:112386200 5'GT 112386200 Upstream 96bp 6402 chr12 50036107 50036107 1 + G T ESCA 50036107 + 50036087 50036127 41 GAAGCTGCCTTTCGAAGCATGCTGAGGCAGGCTGTGCCTGC GAAGCTGCCTTTCGAAGCATTCTGAGGCAGGCTGTGCCTGC Direct Loss 0.933855953358198 0 NA NA prediction 0.867711906716397 Functional Loss - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50036107 chr12:50036107 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6604 0 0 1 0 2 PRPF40B chr12:50036018 3'AG 50036018 Downstream 90bp 6403 chr12 50036107 50036107 1 + G T ESCA 50036107 + 50036087 50036127 41 GAAGCTGCCTTTCGAAGCATGCTGAGGCAGGCTGTGCCTGC GAAGCTGCCTTTCGAAGCATTCTGAGGCAGGCTGTGCCTGC Direct Loss 0.933855953358198 0 NA NA prediction 0.867711906716397 Functional Loss - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50036107 chr12:50036107 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6604 0 0 1 0 2 PRPF40B chr12:50036155 5'GT 50036155 Upstream 49bp 6404 chr1 78395140 78395140 1 + G A SKCM 78395140 + 78395120 78395160 41 AGCAGAAGAAGAAGCCAGAAGGAGAATAGAGGAAGAAAAGA AGCAGAAGAAGAAGCCAGAAAGAGAATAGAGGAAGAAAAGA Direct Loss 0.933852596169649 0 NA NA prediction 0.867705192339298 Functional Loss - NEXN ENSG00000162614 CDS Human protein_coding chr1:78395140 chr1:78395140 nonsynonymous SNV 0.645 0 21 hm7G_associated_SNPs_6606 0 0 1 0 1 NEXN chr1:78395189 5'GT 78395189 Upstream 50bp 6405 chr1 87045066 87045066 1 + G A SKCM 87045066 + 87045046 87045086 41 AAGCAAACCCGCCAAGACCTGAAATTGATGAGGATACTCAG AAGCAAACCCGCCAAGACCTAAAATTGATGAGGATACTCAG Direct Loss 0.933846716909384 0 NA NA prediction 0.867693433818767 Functional Loss - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87045066 chr1:87045066 nonsynonymous SNV 0.917 0 21 hm7G_associated_SNPs_6609 0 0 0 0 1 CLCA4 chr1:87045037 3'AG 87045037 Downstream 30bp 6406 chr1 236920860 236920860 1 + G A LUAD 236920860 + 236920840 236920880 41 GAGGTGGAGACTCAGATCCTGACGAGAGATGCGAAGGGCAT GAGGTGGAGACTCAGATCCTAACGAGAGATGCGAAGGGCAT Direct Loss 0.933845244064525 0 NA NA prediction 0.86769048812905 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236920860 chr1:236920860 synonymous SNV . 0 21 hm7G_associated_SNPs_6610 0 0 0 0 1 ACTN2 chr1:236920786 3'AG 236920786 Downstream 75bp 6407 chr15 41750013 41750013 1 + G A CESC 41750013 + 41749993 41750033 41 CCCGTCTGGAACAGATGACAGAGAAAGAGAGAGAGCAAGAA CCCGTCTGGAACAGATGACAAAGAAAGAGAGAGAGCAAGAA Direct Loss 0.933835527116257 0 NA NA prediction 0.867671054232513 Functional Loss - RTF1 ENSG00000137815 CDS Human protein_coding chr15:41750013 chr15:41750013 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6612 0 0 1 0 1 RTF1 chr15:41750074 5'GT 41750074 Upstream 62bp 6408 chr2 242415339 242415339 1 + G A UCEC 242415339 + 242415319 242415359 41 CTCATCCGGCTGGAGAACCTGCAGAAGCTAACGGAGCTGCA CTCATCCGGCTGGAGAACCTACAGAAGCTAACGGAGCTGCA Direct Loss 0.933824930516151 0 NA NA prediction 0.867649861032302 Functional Loss - FARP2 ENSG00000006607 CDS Human protein_coding chr2:242415339 chr2:242415339 synonymous SNV . 0 21 hm7G_associated_SNPs_6614 0 0 1 0 1 FARP2 chr2:242415272 3'AG 242415272 Downstream 68bp 6409 chr17 8339307 8339307 1 + G A rs8064417 8339307 + 8339287 8339327 41 TGGGCGGGCCTGGCCGGGCCGGCGGAGGGGAGACGTCGGTT TGGGCGGGCCTGGCCGGGCCAGCGGAGGGGAGACGTCGGTT Direct Loss 0.933793955786511 0 NA NA prediction 0.867587911573021 Functional Loss - NDEL1 ENSG00000166579 UTR5 Human protein_coding chr17:8339307 chr17:8339307 . . 0 21 hm7G_associated_SNPs_6621 0 0 1 0 1 NDEL1 chr17:8339363 5'GT 8339363 Upstream 57bp 6410 chrX 153418575 153418575 1 + G A SKCM 153418575 + 153418555 153418595 41 AGCCCCGCCCATCTTTGGTTGGAGCAGGTAAGGGTGCGAGG AGCCCCGCCCATCTTTGGTTAGAGCAGGTAAGGGTGCGAGG Direct Loss 0.933790137858159 0 NA NA prediction 0.867580275716319 Functional Loss - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153418575 chrX:153418575 stopgain 0.997 1 21 hm7G_associated_SNPs_6623 0 0 0 0 1 OPN1LW chrX:153418581 5'GT 153418581 Upstream 7bp 6411 chr20 18163827 18163827 1 + G A BLCA 18163827 + 18163807 18163847 41 TCACAGATTCGTTCCCACCTGCACAGGAGCGACCCTCACTG TCACAGATTCGTTCCCACCTACACAGGAGCGACCCTCACTG Direct Loss 0.933787714653184 0 NA NA prediction 0.867575429306369 Functional Loss - KAT14 ENSG00000149474 CDS Human protein_coding chr20:18163827 chr20:18163827 synonymous SNV . 0 21 hm7G_associated_SNPs_6624 0 0 1 0 1 KAT14 chr20:18163767 3'AG 18163767 Downstream 61bp 6412 chr14 68087615 68087615 1 + G T UCEC 68087615 + 68087595 68087635 41 TTTGTGTGACTGACAGAAAAGAAAAGGAGTGGAGCATGGTC TTTGTGTGACTGACAGAAAATAAAAGGAGTGGAGCATGGTC Direct Loss 0.933780246426933 0 NA NA prediction 0.867560492853866 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68087615 chr14:68087615 nonsynonymous SNV 0.990 3 21 hm7G_associated_SNPs_6625 0 0 1 0 2 ARG2 chr14:68087611 3'AG 68087611 Downstream 5bp 6413 chr14 68087615 68087615 1 + G T UCEC 68087615 + 68087595 68087635 41 TTTGTGTGACTGACAGAAAAGAAAAGGAGTGGAGCATGGTC TTTGTGTGACTGACAGAAAATAAAAGGAGTGGAGCATGGTC Direct Loss 0.933780246426933 0 NA NA prediction 0.867560492853866 Functional Loss - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68087615 chr14:68087615 nonsynonymous SNV 0.990 3 21 hm7G_associated_SNPs_6625 0 0 1 0 2 ARG2 chr14:68087683 5'GT 68087683 Upstream 69bp 6414 chr7 140380905 140380905 1 + G C LUAD 140380905 + 140380885 140380925 41 TGGACTTGAAAAGGAAGATTGCACGGCTGGGGATCAACATG TGGACTTGAAAAGGAAGATTCCACGGCTGGGGATCAACATG Direct Loss 0.933774140084638 0 NA NA prediction 0.867548280169277 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380905 chr7:140380905 nonsynonymous SNV 0.632 4 21 hm7G_associated_SNPs_6626 0 0 1 0 2 ADCK2 chr7:140380842 3'AG 140380842 Downstream 64bp 6415 chr7 140380905 140380905 1 + G C LUAD 140380905 + 140380885 140380925 41 TGGACTTGAAAAGGAAGATTGCACGGCTGGGGATCAACATG TGGACTTGAAAAGGAAGATTCCACGGCTGGGGATCAACATG Direct Loss 0.933774140084638 0 NA NA prediction 0.867548280169277 Functional Loss - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140380905 chr7:140380905 nonsynonymous SNV 0.632 4 21 hm7G_associated_SNPs_6626 0 0 1 0 2 ADCK2 chr7:140380937 5'GT 140380937 Upstream 33bp 6416 chr1 79125158 79125158 1 + G T LUAD 79125158 + 79125138 79125178 41 AAAAGAATTCGAAGGGAGTTGGTAAACGCTGGTGAGTCTCA AAAAGAATTCGAAGGGAGTTTGTAAACGCTGGTGAGTCTCA Direct Loss 0.933774135286271 0 NA NA prediction 0.867548270572542 Functional Loss - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79125158 chr1:79125158 nonsynonymous SNV 0.001 2 21 hm7G_associated_SNPs_6627 0 0 0 0 1 IFI44 chr1:79125168 5'GT 79125168 Upstream 11bp 6417 chr19 13885506 13885506 1 + G A SARC 13885506 + 13885486 13885526 41 AAGGCGCGCGTCGTGCAGCAGCAAAAGCTCAAGAAGGTGTG AAGGCGCGCGTCGTGCAGCAACAAAAGCTCAAGAAGGTGTG Direct Loss 0.933764699892375 0 NA NA prediction 0.86752939978475 Functional Loss - C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13885506 chr19:13885506 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_6629 0 0 1 0 2 C19orf53 chr19:13885466 3'AG 13885466 Downstream 41bp 6418 chr19 13885506 13885506 1 + G A SARC 13885506 + 13885486 13885526 41 AAGGCGCGCGTCGTGCAGCAGCAAAAGCTCAAGAAGGTGTG AAGGCGCGCGTCGTGCAGCAACAAAAGCTCAAGAAGGTGTG Direct Loss 0.933764699892375 0 NA NA prediction 0.86752939978475 Functional Loss - C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13885506 chr19:13885506 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_6629 0 0 1 0 2 C19orf53 chr19:13885521 5'GT 13885521 Upstream 16bp 6419 chr6 43143632 43143632 1 + G A CESC 43143632 + 43143612 43143652 41 AGTGCCAATGGGACTGTGCTGAAGAGTACAGGCAGCGGCCC AGTGCCAATGGGACTGTGCTAAAGAGTACAGGCAGCGGCCC Direct Loss 0.933764187632788 0 NA NA prediction 0.867528375265576 Functional Loss - SRF ENSG00000112658 CDS Human protein_coding chr6:43143632 chr6:43143632 synonymous SNV . 0 21 hm7G_associated_SNPs_6630 0 0 1 0 1 SRF chr6:43143705 5'GT 43143705 Upstream 74bp 6420 chr15 78567844 78567844 1 + G A SKCM 78567844 + 78567824 78567864 41 GGATGATGTTTCATAGGTATGAAAGATGGGCAAAAGATACT GGATGATGTTTCATAGGTATAAAAGATGGGCAAAAGATACT Direct Loss 0.933762958067726 0 NA NA prediction 0.867525916135452 Functional Loss - DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78567844 chr15:78567844 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6631 0 0 0 0 1 DNAJA4 chr15:78567840 3'AG 78567840 Downstream 5bp 6421 chr13 37011885 37011885 1 + G A SKCM 37011885 + 37011865 37011905 41 CAAGGGTTTGACATCTACATGGATGAACTAGAGCAGGGGGA CAAGGGTTTGACATCTACATAGATGAACTAGAGCAGGGGGA Direct Loss 0.933756914625076 0 NA NA prediction 0.867513829250153 Functional Loss - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37011885 chr13:37011885 nonsynonymous SNV 0.957 0 21 hm7G_associated_SNPs_6632 0 0 0 0 1 CCNA1 chr13:37011957 5'GT 37011957 Upstream 73bp 6422 chr17 39846406 39846406 1 + G A LUAD 39846406 + 39846386 39846426 41 AAGTAATTCAGCTACAGGGTGACCAACGCAAGAACATATGC AAGTAATTCAGCTACAGGGTAACCAACGCAAGAACATATGC Direct Loss 0.933756431537235 0 NA NA prediction 0.867512863074469 Functional Loss - EIF1 ENSG00000173812 CDS Human protein_coding chr17:39846406 chr17:39846406 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6633 0 0 1 2 2 EIF1 chr17:39846340 3'AG 39846340 Downstream 67bp 6423 chr17 39846406 39846406 1 + G A LUAD 39846406 + 39846386 39846426 41 AAGTAATTCAGCTACAGGGTGACCAACGCAAGAACATATGC AAGTAATTCAGCTACAGGGTAACCAACGCAAGAACATATGC Direct Loss 0.933756431537235 0 NA NA prediction 0.867512863074469 Functional Loss - EIF1 ENSG00000173812 CDS Human protein_coding chr17:39846406 chr17:39846406 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6633 0 0 1 2 2 EIF1 chr17:39846441 5'GT 39846441 Upstream 36bp 6424 chr20 57598818 57598818 1 + G C BLCA 57598818 + 57598798 57598838 41 TACACGGAGGGAGCCGAGCTGATCGAGAATGTCCTAGAGGT TACACGGAGGGAGCCGAGCTCATCGAGAATGTCCTAGAGGT Direct Loss 0.933756229666435 0 NA NA prediction 0.867512459332871 Functional Loss - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598818 chr20:57598818 synonymous SNV . 0 21 hm7G_associated_SNPs_6634 0 0 0 0 1 TUBB1 chr20:57598760 3'AG 57598760 Downstream 59bp 6425 chr19 39689812 39689812 1 + G C OV 39689812 + 39689792 39689832 41 CCGGCCCTTCTTTCACAGCTGGACAGTGAAGCAGCAGTGTG CCGGCCCTTCTTTCACAGCTCGACAGTGAAGCAGCAGTGTG Direct Loss 0.933754865986426 0 NA NA prediction 0.867509731972851 Functional Loss - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39689812 chr19:39689812 nonsynonymous SNV 0.950 4 21 hm7G_associated_SNPs_6635 0 0 0 0 2 NCCRP1 chr19:39689810 3'AG 39689810 Downstream 3bp 6426 chr19 39689812 39689812 1 + G C OV 39689812 + 39689792 39689832 41 CCGGCCCTTCTTTCACAGCTGGACAGTGAAGCAGCAGTGTG CCGGCCCTTCTTTCACAGCTCGACAGTGAAGCAGCAGTGTG Direct Loss 0.933754865986426 0 NA NA prediction 0.867509731972851 Functional Loss - NCCRP1 ENSG00000188505 CDS Human protein_coding chr19:39689812 chr19:39689812 nonsynonymous SNV 0.950 4 21 hm7G_associated_SNPs_6635 0 0 0 0 2 NCCRP1 chr19:39689905 5'GT 39689905 Upstream 94bp 6427 chr11 5009511 5009511 1 + G T CESC 5009511 + 5009491 5009531 41 CCGTTCCAGTGCCCCCTGCTGCAGACCATAAAGGATGGGAC CCGTTCCAGTGCCCCCTGCTTCAGACCATAAAGGATGGGAC Direct Loss 0.933754538370033 0 NA NA prediction 0.867509076740065 Functional Loss - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5009511 chr11:5009511 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_6636 0 0 0 0 1 MMP26 chr11:5009540 5'GT 5009540 Upstream 30bp 6428 chr22 23626202 23626202 1 + G A rs149366459 23626202 + 23626182 23626222 41 GACAGCTTCATGGTGGAGCTGGTGGAGGGGGCCCGCAAGCT GACAGCTTCATGGTGGAGCTAGTGGAGGGGGCCCGCAAGCT Direct Loss 0.933732965386213 0 NA NA prediction 0.867465930772425 Functional Loss - BCR ENSG00000186716 CDS Human protein_coding chr22:23626202 chr22:23626202 synonymous SNV . 0 21 hm7G_associated_SNPs_6640 0 0 1 0 1 BCR chr22:23626164 3'AG 23626164 Downstream 39bp 6429 chr12 54917219 54917219 1 + G A SKCM 54917219 + 54917199 54917239 41 ACTACAATCAGCAAAGCCAAGAACAAGAAAACCAGGAAGCA ACTACAATCAGCAAAGCCAAAAACAAGAAAACCAGGAAGCA Direct Loss 0.933720431104669 0 NA NA prediction 0.867440862209338 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54917219 chr12:54917219 synonymous SNV . 0 21 hm7G_associated_SNPs_6641 0 0 1 0 1 NCKAP1L chr12:54917178 3'AG 54917178 Downstream 42bp 6430 chr15 63548779 63548779 1 + G C ESCA 63548779 + 63548759 63548799 41 ACAAAAGACAAGTGTCAAAAGAAAGAGGGGAGAAGGTAAAT ACAAAAGACAAGTGTCAAAACAAAGAGGGGAGAAGGTAAAT Direct Loss 0.933717016189594 0 NA NA prediction 0.867434032379187 Functional Loss - RAB8B ENSG00000166128 CDS Human protein_coding chr15:63548779 chr15:63548779 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6642 0 0 1 0 2 RAB8B chr15:63548704 3'AG 63548704 Downstream 76bp 6431 chr15 63548779 63548779 1 + G C ESCA 63548779 + 63548759 63548799 41 ACAAAAGACAAGTGTCAAAAGAAAGAGGGGAGAAGGTAAAT ACAAAAGACAAGTGTCAAAACAAAGAGGGGAGAAGGTAAAT Direct Loss 0.933717016189594 0 NA NA prediction 0.867434032379187 Functional Loss - RAB8B ENSG00000166128 CDS Human protein_coding chr15:63548779 chr15:63548779 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6642 0 0 1 0 2 RAB8B chr15:63548793 5'GT 63548793 Upstream 15bp 6432 chr3 179082112 179082112 1 + G T LUSC 179082112 + 179082092 179082132 41 ACAGATGTCACTACAGAGCTGGATAGCTGGATTGATAAGTT ACAGATGTCACTACAGAGCTTGATAGCTGGATTGATAAGTT Direct Loss 0.933715697417675 0 NA NA prediction 0.867431394835349 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082112 chr3:179082112 synonymous SNV . 0 21 hm7G_associated_SNPs_6643 0 0 1 0 2 MFN1 chr3:179082085 3'AG 179082085 Downstream 28bp 6433 chr3 179082112 179082112 1 + G T LUSC 179082112 + 179082092 179082132 41 ACAGATGTCACTACAGAGCTGGATAGCTGGATTGATAAGTT ACAGATGTCACTACAGAGCTTGATAGCTGGATTGATAAGTT Direct Loss 0.933715697417675 0 NA NA prediction 0.867431394835349 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082112 chr3:179082112 synonymous SNV . 0 21 hm7G_associated_SNPs_6643 0 0 1 0 2 MFN1 chr3:179082193 5'GT 179082193 Upstream 82bp 6434 chrX 37668861 37668861 1 + G A SKCM 37668861 + 37668841 37668881 41 CATGATGAGGAGAAAGATGTGATCACAGGCCTGAAACAAAA CATGATGAGGAGAAAGATGTAATCACAGGCCTGAAACAAAA Direct Loss 0.933715234108881 0 NA NA prediction 0.867430468217762 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37668861 chrX:37668861 synonymous SNV . 0 21 hm7G_associated_SNPs_6644 0 0 0 0 2 CYBB chrX:37668820 3'AG 37668820 Downstream 42bp 6435 chrX 37668861 37668861 1 + G A SKCM 37668861 + 37668841 37668881 41 CATGATGAGGAGAAAGATGTGATCACAGGCCTGAAACAAAA CATGATGAGGAGAAAGATGTAATCACAGGCCTGAAACAAAA Direct Loss 0.933715234108881 0 NA NA prediction 0.867430468217762 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37668861 chrX:37668861 synonymous SNV . 0 21 hm7G_associated_SNPs_6644 0 0 0 0 2 CYBB chrX:37668944 5'GT 37668944 Upstream 84bp 6436 chr14 24642396 24642396 1 + G A LUSC 24642396 + 24642376 24642416 41 CTGCAGATCCGAATAGATATGGAGACTGAGCTGTGAGTGTG CTGCAGATCCGAATAGATATAGAGACTGAGCTGTGAGTGTG Direct Loss 0.933715176316011 0 NA NA prediction 0.867430352632021 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642396 chr14:24642396 nonsynonymous SNV 0.864 1 21 hm7G_associated_SNPs_6645 0 0 0 0 2 REC8 chr14:24642335 3'AG 24642335 Downstream 62bp 6437 chr14 24642396 24642396 1 + G A LUSC 24642396 + 24642376 24642416 41 CTGCAGATCCGAATAGATATGGAGACTGAGCTGTGAGTGTG CTGCAGATCCGAATAGATATAGAGACTGAGCTGTGAGTGTG Direct Loss 0.933715176316011 0 NA NA prediction 0.867430352632021 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642396 chr14:24642396 nonsynonymous SNV 0.864 1 21 hm7G_associated_SNPs_6645 0 0 0 0 2 REC8 chr14:24642407 5'GT 24642407 Upstream 12bp 6438 chr9 141070695 141070695 1 + G A rs183702666 141070695 + 141070675 141070715 41 AAACAACTGGGCCAAGGGACGCTACACCGAAGGCGCGGAGC AAACAACTGGGCCAAGGGACACTACACCGAAGGCGCGGAGC Direct Loss 0.933714418405119 0 NA NA prediction 0.867428836810238 Functional Loss - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141070695 chr9:141070695 . . 0 21 hm7G_associated_SNPs_6646 0 0 0 0 1 TUBBP5 chr9:141070659 3'AG 141070659 Downstream 37bp 6439 chr10 103919024 103919024 1 + G T LUAD 103919024 + 103919004 103919044 41 GCAGCAGCAGCAGTAGCAGTGATGACTCAGAGGAGGAGAAG GCAGCAGCAGCAGTAGCAGTTATGACTCAGAGGAGGAGAAG Direct Loss 0.93370387238138 0 NA NA prediction 0.86740774476276 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919024 chr10:103919024 nonsynonymous SNV 0.943 3 21 hm7G_associated_SNPs_6647 0 0 1 0 3 NOLC1 chr10:103918950 3'AG 103918950 Downstream 75bp 6440 chr10 103919024 103919024 1 + G T LUAD 103919024 + 103919004 103919044 41 GCAGCAGCAGCAGTAGCAGTGATGACTCAGAGGAGGAGAAG GCAGCAGCAGCAGTAGCAGTTATGACTCAGAGGAGGAGAAG Direct Loss 0.93370387238138 0 NA NA prediction 0.86740774476276 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919024 chr10:103919024 nonsynonymous SNV 0.943 3 21 hm7G_associated_SNPs_6647 0 0 1 0 3 NOLC1 chr10:103919065 5'GT 103919065 Upstream 42bp 6441 chr10 103919024 103919024 1 + G T LUAD 103919024 + 103919004 103919044 41 GCAGCAGCAGCAGTAGCAGTGATGACTCAGAGGAGGAGAAG GCAGCAGCAGCAGTAGCAGTTATGACTCAGAGGAGGAGAAG Direct Loss 0.93370387238138 0 NA NA prediction 0.86740774476276 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103919024 chr10:103919024 nonsynonymous SNV 0.943 3 21 hm7G_associated_SNPs_6647 0 0 1 0 3 NOLC1 chr10:103919095 5'GT 103919095 Upstream 72bp 6442 chr5 72801092 72801092 1 + G A rs545142219 72801092 + 72801072 72801112 41 AACTTCTGAAGATAAAACCTGAAGAAGTTACTGGGAGCTGC AACTTCTGAAGATAAAACCTAAAGAAGTTACTGGGAGCTGC Direct Loss 0.933703726222118 0 NA NA prediction 0.867407452444235 Functional Loss - BTF3 ENSG00000145741 UTR3 Human protein_coding chr5:72801092 chr5:72801092 . . 0 21 hm7G_associated_SNPs_6648 0 0 1 4 1 BTF3 chr5:72801017 3'AG 72801017 Downstream 76bp 6443 chr7 150704289 150704289 1 + G T SARC 150704289 + 150704269 150704309 41 GAACTGGGCGGGGAGCGGCTGCTGCAGCTGGGCCAGGGCGA GAACTGGGCGGGGAGCGGCTTCTGCAGCTGGGCCAGGGCGA Direct Loss 0.933700743508893 0 NA NA prediction 0.867401487017787 Functional Loss - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704289 chr7:150704289 synonymous SNV . 0 21 hm7G_associated_SNPs_6649 0 0 0 0 2 NOS3 chr7:150704190 3'AG 150704190 Downstream 100bp 6444 chr7 150704289 150704289 1 + G T SARC 150704289 + 150704269 150704309 41 GAACTGGGCGGGGAGCGGCTGCTGCAGCTGGGCCAGGGCGA GAACTGGGCGGGGAGCGGCTTCTGCAGCTGGGCCAGGGCGA Direct Loss 0.933700743508893 0 NA NA prediction 0.867401487017787 Functional Loss - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704289 chr7:150704289 synonymous SNV . 0 21 hm7G_associated_SNPs_6649 0 0 0 0 2 NOS3 chr7:150704364 5'GT 150704364 Upstream 76bp 6445 chr1 55188412 55188412 1 + G T LUAD 55188412 + 55188392 55188432 41 AACTGGTGTGATGAGGGACTGCAAATAGATGCCAAAGAGAA AACTGGTGTGATGAGGGACTTCAAATAGATGCCAAAGAGAA Direct Loss 0.933699679380331 0 NA NA prediction 0.867399358760661 Functional Loss - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55188412 chr1:55188412 synonymous SNV . 0 21 hm7G_associated_SNPs_6650 0 0 1 0 2 TTC4 chr1:55188348 3'AG 55188348 Downstream 65bp 6446 chr1 55188412 55188412 1 + G T LUAD 55188412 + 55188392 55188432 41 AACTGGTGTGATGAGGGACTGCAAATAGATGCCAAAGAGAA AACTGGTGTGATGAGGGACTTCAAATAGATGCCAAAGAGAA Direct Loss 0.933699679380331 0 NA NA prediction 0.867399358760661 Functional Loss - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55188412 chr1:55188412 synonymous SNV . 0 21 hm7G_associated_SNPs_6650 0 0 1 0 2 TTC4 chr1:55188472 5'GT 55188472 Upstream 61bp 6447 chr11 64004683 64004683 1 + G T HNSC 64004683 + 64004663 64004703 41 AAAAAAAAGGACAGTGCTGTGAAGCCAGACAGGTGAGTCTT AAAAAAAAGGACAGTGCTGTTAAGCCAGACAGGTGAGTCTT Direct Loss 0.933694987035862 0 NA NA prediction 0.867389974071725 Functional Loss - VEGFB ENSG00000173511 CDS Human protein_coding chr11:64004683 chr11:64004683 synonymous SNV . 0 21 hm7G_associated_SNPs_6652 0 0 1 0 2 VEGFB chr11:64004659 3'AG 64004659 Downstream 25bp 6448 chr11 64004683 64004683 1 + G T HNSC 64004683 + 64004663 64004703 41 AAAAAAAAGGACAGTGCTGTGAAGCCAGACAGGTGAGTCTT AAAAAAAAGGACAGTGCTGTTAAGCCAGACAGGTGAGTCTT Direct Loss 0.933694987035862 0 NA NA prediction 0.867389974071725 Functional Loss - VEGFB ENSG00000173511 CDS Human protein_coding chr11:64004683 chr11:64004683 synonymous SNV . 0 21 hm7G_associated_SNPs_6652 0 0 1 0 2 VEGFB chr11:64004694 5'GT 64004694 Upstream 12bp 6449 chr16 30387760 30387760 1 + G C CESC 30387760 + 30387740 30387780 41 CCAGGCCGCCTCAATGTGAAGAATGAGGAGTTGGATGCCAT CCAGGCCGCCTCAATGTGAACAATGAGGAGTTGGATGCCAT Direct Loss 0.933692291485809 0 NA NA prediction 0.867384582971617 Functional Loss - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387760 chr16:30387760 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_6653 0 0 1 0 1 MYLPF chr16:30387744 3'AG 30387744 Downstream 17bp 6450 chr4 56290771 56290771 1 + G T LGG 56290771 + 56290751 56290791 41 GCACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAG GCACGGGATTGGCAGTAATTTGAGGAAGAATGATAGCACAG Direct Loss 0.933691042707657 0 NA NA prediction 0.867382085415314 Functional Loss - TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56290771 chr4:56290771 stopgain 0.985 1 21 hm7G_associated_SNPs_6654 0 0 1 0 2 TMEM165 chr4:56290705 3'AG 56290705 Downstream 67bp 6451 chr4 56290771 56290771 1 + G T LGG 56290771 + 56290751 56290791 41 GCACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAG GCACGGGATTGGCAGTAATTTGAGGAAGAATGATAGCACAG Direct Loss 0.933691042707657 0 NA NA prediction 0.867382085415314 Functional Loss - TMEM165 ENSG00000134851 CDS Human protein_coding chr4:56290771 chr4:56290771 stopgain 0.985 1 21 hm7G_associated_SNPs_6654 0 0 1 0 2 TMEM165 chr4:56290810 5'GT 56290810 Upstream 40bp 6452 chr1 156180072 156180072 1 + G A BLCA 156180072 + 156180052 156180092 41 ATCCTGACCTTCAGACAGCTGATGGCAGAAGAAGGGCCTTG ATCCTGACCTTCAGACAGCTAATGGCAGAAGAAGGGCCTTG Direct Loss 0.933684678488031 0 NA NA prediction 0.867369356976061 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156180072 chr1:156180072 synonymous SNV . 0 21 hm7G_associated_SNPs_6655 0 0 1 0 1 SLC25A44 chr1:156180031 3'AG 156180031 Downstream 42bp 6453 chrX 64959657 64959657 1 + G T KIRC 64959657 + 64959637 64959677 41 CTGCCAATGACATGATCCATGCTGAGAACATGCGACTGGGC CTGCCAATGACATGATCCATTCTGAGAACATGCGACTGGGC Direct Loss 0.933677188734363 0 NA NA prediction 0.867354377468726 Functional Loss - MSN ENSG00000147065 CDS Human protein_coding chrX:64959657 chrX:64959657 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6657 0 0 1 0 1 MSN chrX:64959591 3'AG 64959591 Downstream 67bp 6454 chr10 60560007 60560007 1 + G A rs145584701 60560007 + 60559987 60560027 41 TCATCACTTGGAGAAAAAGTGCTGAGTGCAAATCACGGGGA TCATCACTTGGAGAAAAAGTACTGAGTGCAAATCACGGGGA Direct Loss 0.933672134684093 0 NA NA prediction 0.867344269368187 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560007 chr10:60560007 synonymous SNV . 0 21 hm7G_associated_SNPs_6658 0 0 1 0 2 BICC1 chr10:60559954 3'AG 60559954 Downstream 54bp 6455 chr10 60560007 60560007 1 + G A rs145584701 60560007 + 60559987 60560027 41 TCATCACTTGGAGAAAAAGTGCTGAGTGCAAATCACGGGGA TCATCACTTGGAGAAAAAGTACTGAGTGCAAATCACGGGGA Direct Loss 0.933672134684093 0 NA NA prediction 0.867344269368187 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560007 chr10:60560007 synonymous SNV . 0 21 hm7G_associated_SNPs_6658 0 0 1 0 2 BICC1 chr10:60560086 5'GT 60560086 Upstream 80bp 6456 chr2 74649461 74649461 1 + G A rs147527356 74649461 + 74649441 74649481 41 TGGCCCAGCGCCAGCTCCACGCTAAGGAGGGTGCTGGAGTG TGGCCCAGCGCCAGCTCCACACTAAGGAGGGTGCTGGAGTG Direct Loss 0.933665221833749 0 NA NA prediction 0.867330443667498 Functional Loss - WDR54 ENSG00000005448 CDS Human protein_coding chr2:74649461 chr2:74649461 nonsynonymous SNV 0.401 1 21 hm7G_associated_SNPs_6659 0 0 1 0 1 WDR54 chr2:74649502 5'GT 74649502 Upstream 42bp 6457 chr12 122672316 122672316 1 + G A rs145831421 122672316 + 122672296 122672336 41 GCCCACCCACCCGCCGGCCTGCAGCACTTGGGGTTAGGCCA GCCCACCCACCCGCCGGCCTACAGCACTTGGGGTTAGGCCA Direct Loss 0.93365467896969 0 NA NA prediction 0.867309357939381 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122672316 chr12:122672316 synonymous SNV . 0 21 hm7G_associated_SNPs_6660 0 0 0 0 2 LRRC43 chr12:122672248 3'AG 122672248 Downstream 69bp 6458 chr12 122672316 122672316 1 + G A rs145831421 122672316 + 122672296 122672336 41 GCCCACCCACCCGCCGGCCTGCAGCACTTGGGGTTAGGCCA GCCCACCCACCCGCCGGCCTACAGCACTTGGGGTTAGGCCA Direct Loss 0.93365467896969 0 NA NA prediction 0.867309357939381 Functional Loss - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122672316 chr12:122672316 synonymous SNV . 0 21 hm7G_associated_SNPs_6660 0 0 0 0 2 LRRC43 chr12:122672387 5'GT 122672387 Upstream 72bp 6459 chr5 132209674 132209674 1 + G A UCEC 132209674 + 132209654 132209694 41 CCAATACCAGAAGTGAGTTCGGCAAAGAGAAGGCCACGGAG CCAATACCAGAAGTGAGTTCAGCAAAGAGAAGGCCACGGAG Direct Loss 0.933653072017737 0 NA NA prediction 0.867306144035474 Functional Loss - LEAP2 ENSG00000164406 CDS Human protein_coding chr5:132209674 chr5:132209674 synonymous SNV . 0 21 hm7G_associated_SNPs_6661 0 0 1 0 1 LEAP2 chr5:132209642 3'AG 132209642 Downstream 33bp 6460 chr6 348796 348796 1 + G A SKCM 348796 + 348776 348816 41 AGTGGCTGAAGGAAGAATATGGAGAGAGCCCTTTGCAGGAT AGTGGCTGAAGGAAGAATATAGAGAGAGCCCTTTGCAGGAT Direct Loss 0.933645334408032 0 NA NA prediction 0.867290668816064 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348796 chr6:348796 nonsynonymous SNV 0.942 2 21 hm7G_associated_SNPs_6664 0 0 1 0 2 DUSP22 chr6:348769 3'AG 348769 Downstream 28bp 6461 chr6 348796 348796 1 + G A SKCM 348796 + 348776 348816 41 AGTGGCTGAAGGAAGAATATGGAGAGAGCCCTTTGCAGGAT AGTGGCTGAAGGAAGAATATAGAGAGAGCCCTTTGCAGGAT Direct Loss 0.933645334408032 0 NA NA prediction 0.867290668816064 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348796 chr6:348796 nonsynonymous SNV 0.942 2 21 hm7G_associated_SNPs_6664 0 0 1 0 2 DUSP22 chr6:348841 5'GT 348841 Upstream 46bp 6462 chr18 61233861 61233861 1 + G A rs188221723 61233861 + 61233841 61233881 41 TTGAAAGGAAAATCACCTATGAAAAAATGGTGGCCTGGAGC TTGAAAGGAAAATCACCTATAAAAAAATGGTGGCCTGGAGC Direct Loss 0.933643957082929 0 NA NA prediction 0.867287914165858 Functional Loss - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61233861 chr18:61233861 nonsynonymous SNV 0.088 4 21 hm7G_associated_SNPs_6666 0 0 0 0 1 SERPINB12 chr18:61233840 3'AG 61233840 Downstream 22bp 6463 chr10 102796839 102796839 1 + G A UCEC 102796839 + 102796819 102796859 41 CCCCTCCCTTGCAGAGAGCTGCAGGTGGGCATCCCGGTGGC CCCCTCCCTTGCAGAGAGCTACAGGTGGGCATCCCGGTGGC Direct Loss 0.933634055134562 0 NA NA prediction 0.867268110269125 Functional Loss - SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102796839 chr10:102796839 synonymous SNV . 0 21 hm7G_associated_SNPs_6668 0 0 1 0 1 SFXN3 chr10:102796833 3'AG 102796833 Downstream 7bp 6464 chr16 67416106 67416106 1 + G A SKCM 67416106 + 67416086 67416126 41 AACCAGGAGCTTGCCCAGCTGAAAAAGCTGGAGAAGACAGT AACCAGGAGCTTGCCCAGCTAAAAAAGCTGGAGAAGACAGT Direct Loss 0.933629093255402 0 NA NA prediction 0.867258186510805 Functional Loss - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67416106 chr16:67416106 synonymous SNV . 0 21 hm7G_associated_SNPs_6671 0 0 1 0 2 LRRC36 chr16:67416036 3'AG 67416036 Downstream 71bp 6465 chr16 67416106 67416106 1 + G A SKCM 67416106 + 67416086 67416126 41 AACCAGGAGCTTGCCCAGCTGAAAAAGCTGGAGAAGACAGT AACCAGGAGCTTGCCCAGCTAAAAAAGCTGGAGAAGACAGT Direct Loss 0.933629093255402 0 NA NA prediction 0.867258186510805 Functional Loss - LRRC36 ENSG00000159708 CDS Human protein_coding chr16:67416106 chr16:67416106 synonymous SNV . 0 21 hm7G_associated_SNPs_6671 0 0 1 0 2 LRRC36 chr16:67416150 5'GT 67416150 Upstream 45bp 6466 chr16 19027819 19027819 1 + G T LUSC 19027819 + 19027799 19027839 41 TCTCTCCGAATGGGACCAGTGGAAGCGGTATAGCAGCAAGT TCTCTCCGAATGGGACCAGTTGAAGCGGTATAGCAGCAAGT Direct Loss 0.933621257813643 0 NA NA prediction 0.867242515627286 Functional Loss - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19027819 chr16:19027819 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6673 0 0 0 0 1 TMC7 chr16:19027772 3'AG 19027772 Downstream 48bp 6467 chr10 69647234 69647234 1 + G A BLCA 69647234 + 69647214 69647254 41 TTCATTCCTGTGAAAGTGATGAGGAGGATAGAGCCTCACAT TTCATTCCTGTGAAAGTGATAAGGAGGATAGAGCCTCACAT Direct Loss 0.933620874127529 0 NA NA prediction 0.867241748255058 Functional Loss - SIRT1 ENSG00000096717 CDS Human protein_coding chr10:69647234 chr10:69647234 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6674 0 0 1 0 2 SIRT1 chr10:69647175 3'AG 69647175 Downstream 60bp 6468 chr10 69647234 69647234 1 + G A BLCA 69647234 + 69647214 69647254 41 TTCATTCCTGTGAAAGTGATGAGGAGGATAGAGCCTCACAT TTCATTCCTGTGAAAGTGATAAGGAGGATAGAGCCTCACAT Direct Loss 0.933620874127529 0 NA NA prediction 0.867241748255058 Functional Loss - SIRT1 ENSG00000096717 CDS Human protein_coding chr10:69647234 chr10:69647234 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6674 0 0 1 0 2 SIRT1 chr10:69647291 5'GT 69647291 Upstream 58bp 6469 chr14 68191275 68191275 1 + G T UCEC 68191275 + 68191255 68191295 41 CTGGCGCCAACACGGGCATTGGCAAGGAGACGGCCAGAGAG CTGGCGCCAACACGGGCATTTGCAAGGAGACGGCCAGAGAG Direct Loss 0.933620717770177 0 NA NA prediction 0.867241435540354 Functional Loss - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191275 chr14:68191275 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_6675 0 0 0 0 2 RDH12 chr14:68191190 3'AG 68191190 Downstream 86bp 6470 chr14 68191275 68191275 1 + G T UCEC 68191275 + 68191255 68191295 41 CTGGCGCCAACACGGGCATTGGCAAGGAGACGGCCAGAGAG CTGGCGCCAACACGGGCATTTGCAAGGAGACGGCCAGAGAG Direct Loss 0.933620717770177 0 NA NA prediction 0.867241435540354 Functional Loss - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191275 chr14:68191275 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_6675 0 0 0 0 2 RDH12 chr14:68191308 5'GT 68191308 Upstream 34bp 6471 chr4 110754393 110754393 1 + G A UCEC 110754393 + 110754373 110754413 41 CAATTATTATTAACCTGGCTGTTACTGATATAGGGGTCAGT CAATTATTATTAACCTGGCTATTACTGATATAGGGGTCAGT Direct Loss 0.933608882881139 0 NA NA prediction 0.867217765762279 Functional Loss - RRH ENSG00000180245 CDS Human protein_coding chr4:110754393 chr4:110754393 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_6677 0 0 1 0 2 RRH chr4:110754295 3'AG 110754295 Downstream 99bp 6472 chr4 110754393 110754393 1 + G A UCEC 110754393 + 110754373 110754413 41 CAATTATTATTAACCTGGCTGTTACTGATATAGGGGTCAGT CAATTATTATTAACCTGGCTATTACTGATATAGGGGTCAGT Direct Loss 0.933608882881139 0 NA NA prediction 0.867217765762279 Functional Loss - RRH ENSG00000180245 CDS Human protein_coding chr4:110754393 chr4:110754393 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_6677 0 0 1 0 2 RRH chr4:110754485 5'GT 110754485 Upstream 93bp 6473 chr2 198327288 198327288 1 + G T UCEC 198327288 + 198327268 198327308 41 CAATGCAGGAAATGTATGATGTAGTATCGGGAGTGGAGGAT CAATGCAGGAAATGTATGATTTAGTATCGGGAGTGGAGGAT Direct Loss 0.933601122800565 0 NA NA prediction 0.867202245601131 Functional Loss - COQ10B ENSG00000115520 CDS Human protein_coding chr2:198327288 chr2:198327288 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_6679 0 0 1 0 1 COQ10B chr2:198327263 3'AG 198327263 Downstream 26bp 6474 chr6 160557671 160557671 1 + G A UCEC 160557671 + 160557651 160557691 41 AGGAAGCGCACCTTCATCCTGATGTACCTGTGGTGAGGGGC AGGAAGCGCACCTTCATCCTAATGTACCTGTGGTGAGGGGC Direct Loss 0.933593398549122 0 NA NA prediction 0.867186797098244 Functional Loss - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557671 chr6:160557671 synonymous SNV . 0 21 hm7G_associated_SNPs_6680 0 0 0 0 2 SLC22A1 chr6:160557576 3'AG 160557576 Downstream 96bp 6475 chr6 160557671 160557671 1 + G A UCEC 160557671 + 160557651 160557691 41 AGGAAGCGCACCTTCATCCTGATGTACCTGTGGTGAGGGGC AGGAAGCGCACCTTCATCCTAATGTACCTGTGGTGAGGGGC Direct Loss 0.933593398549122 0 NA NA prediction 0.867186797098244 Functional Loss - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557671 chr6:160557671 synonymous SNV . 0 21 hm7G_associated_SNPs_6680 0 0 0 0 2 SLC22A1 chr6:160557682 5'GT 160557682 Upstream 12bp 6476 chr17 8349144 8349144 1 + G C CESC 8349144 + 8349124 8349164 41 GAAATAGAGACTTGCAGGCTGATAACCAAAGACTGAAATAT GAAATAGAGACTTGCAGGCTCATAACCAAAGACTGAAATAT Direct Loss 0.933592314444136 0 NA NA prediction 0.867184628888271 Functional Loss - NDEL1 ENSG00000166579 CDS Human protein_coding chr17:8349144 chr17:8349144 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6681 0 0 1 0 1 NDEL1 chr17:8349182 5'GT 8349182 Upstream 39bp 6477 chr2 216960888 216960888 1 + G T UCEC 216960888 + 216960868 216960908 41 AAACAGATGAGGAGCCCGGAGAATCAGAAGGTGGAGATCAG AAACAGATGAGGAGCCCGGATAATCAGAAGGTGGAGATCAG Direct Loss 0.93358793543783 0 NA NA prediction 0.86717587087566 Functional Loss - TMEM169 ENSG00000163449 CDS Human protein_coding chr2:216960888 chr2:216960888 stopgain 0.051 0 21 hm7G_associated_SNPs_6682 0 0 0 0 1 TMEM169 chr2:216960957 5'GT 216960957 Upstream 70bp 6478 chr8 67086742 67086742 1 + G A UCEC 67086742 + 67086722 67086762 41 CTCCCCTCCAGGGACAGGCTGCAGCTCCAGCGAGTGGCAGT CTCCCCTCCAGGGACAGGCTACAGCTCCAGCGAGTGGCAGT Direct Loss 0.933578977854923 0 NA NA prediction 0.867157955709847 Functional Loss - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67086742 chr8:67086742 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_6683 0 0 0 0 1 TRIM55 chr8:67086706 3'AG 67086706 Downstream 37bp 6479 chr7 48086162 48086162 1 + G A UCEC 48086162 + 48086142 48086182 41 GGGCCCTTCGACTTCGACATGAAAACAGTTTGGCAAAGAGA GGGCCCTTCGACTTCGACATAAAAACAGTTTGGCAAAGAGA Direct Loss 0.93356643827416 0 NA NA prediction 0.867132876548321 Functional Loss - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48086162 chr7:48086162 nonsynonymous SNV 0.949 0 21 hm7G_associated_SNPs_6685 0 0 0 0 1 C7orf57 chr7:48086213 5'GT 48086213 Upstream 52bp 6480 chrX 133559262 133559262 1 + G C BLCA 133559262 + 133559242 133559282 41 AAAATCATAGTGGAAATGATGAGAGAGATGAAGAAGATGAG AAAATCATAGTGGAAATGATCAGAGAGATGAAGAAGATGAG Direct Loss 0.933562818724057 0 NA NA prediction 0.867125637448114 Functional Loss - PHF6 ENSG00000156531 CDS Human protein_coding chrX:133559262 chrX:133559262 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6687 0 0 1 0 2 PHF6 chrX:133559231 3'AG 133559231 Downstream 32bp 6481 chrX 133559262 133559262 1 + G C BLCA 133559262 + 133559242 133559282 41 AAAATCATAGTGGAAATGATGAGAGAGATGAAGAAGATGAG AAAATCATAGTGGAAATGATCAGAGAGATGAAGAAGATGAG Direct Loss 0.933562818724057 0 NA NA prediction 0.867125637448114 Functional Loss - PHF6 ENSG00000156531 CDS Human protein_coding chrX:133559262 chrX:133559262 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6687 0 0 1 0 2 PHF6 chrX:133559360 5'GT 133559360 Upstream 99bp 6482 chr11 65299148 65299148 1 + G A rs201426628 65299148 + 65299128 65299168 41 GCCATGCGCATCCGCCTCCTGCAGCAGGTGAGGCCTCTGTA GCCATGCGCATCCGCCTCCTACAGCAGGTGAGGCCTCTGTA Direct Loss 0.933561099743911 0 NA NA prediction 0.867122199487821 Functional Loss - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65299148 chr11:65299148 synonymous SNV . 0 21 hm7G_associated_SNPs_6689 0 0 0 0 1 SCYL1 chr11:65299154 5'GT 65299154 Upstream 7bp 6483 chr9 127982925 127982925 1 + G A UCEC 127982925 + 127982905 127982945 41 AGCTATATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCCC AGCTATATGTCTTTGGGGGCAGAGAGAGAGGTGCCCAGCCC Direct Loss 0.933556693459221 0 NA NA prediction 0.867113386918442 Functional Loss - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127982925 chr9:127982925 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_6690 0 0 1 0 1 RABEPK chr9:127982979 5'GT 127982979 Upstream 55bp 6484 chr17 47219493 47219493 1 + G A SKCM 47219493 + 47219473 47219513 41 CAGAGCGACCTCCCAGCGGTGAAAGCGAGGAGACAGGCTGA CAGAGCGACCTCCCAGCGGTAAAAGCGAGGAGACAGGCTGA Direct Loss 0.933548764397272 0 NA NA prediction 0.867097528794545 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47219493 chr17:47219493 synonymous SNV . 0 21 hm7G_associated_SNPs_6692 0 0 0 0 2 B4GALNT2 chr17:47219397 3'AG 47219397 Downstream 97bp 6485 chr17 47219493 47219493 1 + G A SKCM 47219493 + 47219473 47219513 41 CAGAGCGACCTCCCAGCGGTGAAAGCGAGGAGACAGGCTGA CAGAGCGACCTCCCAGCGGTAAAAGCGAGGAGACAGGCTGA Direct Loss 0.933548764397272 0 NA NA prediction 0.867097528794545 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47219493 chr17:47219493 synonymous SNV . 0 21 hm7G_associated_SNPs_6692 0 0 0 0 2 B4GALNT2 chr17:47219534 5'GT 47219534 Upstream 42bp 6486 chr1 155279945 155279945 1 + G A COAD 155279945 + 155279925 155279965 41 ATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGA ATCGTTAGGGTGCTGACTGAAGATGAGATGGGGCACCCAGA Direct Loss 0.933537245667697 0 NA NA prediction 0.867074491335394 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155279945 chr1:155279945 synonymous SNV . 0 21 hm7G_associated_SNPs_6693 0 0 1 0 2 FDPS chr1:155279855 3'AG 155279855 Downstream 91bp 6487 chr1 155279945 155279945 1 + G A COAD 155279945 + 155279925 155279965 41 ATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGA ATCGTTAGGGTGCTGACTGAAGATGAGATGGGGCACCCAGA Direct Loss 0.933537245667697 0 NA NA prediction 0.867074491335394 Functional Loss - FDPS ENSG00000160752 CDS Human protein_coding chr1:155279945 chr1:155279945 synonymous SNV . 0 21 hm7G_associated_SNPs_6693 0 0 1 0 2 FDPS chr1:155279996 5'GT 155279996 Upstream 52bp 6488 chr11 59560891 59560891 1 + G A PAAD 59560891 + 59560871 59560911 41 TCCAAGCAAGCCCTCAGTGAGATTGAGGGACGACACAAGGA TCCAAGCAAGCCCTCAGTGAAATTGAGGGACGACACAAGGA Direct Loss 0.93352618883061 0 NA NA prediction 0.86705237766122 Functional Loss - STX3 ENSG00000166900 CDS Human protein_coding chr11:59560891 chr11:59560891 synonymous SNV . 0 21 hm7G_associated_SNPs_6696 0 0 1 0 2 STX3 chr11:59560853 3'AG 59560853 Downstream 39bp 6489 chr11 59560891 59560891 1 + G A PAAD 59560891 + 59560871 59560911 41 TCCAAGCAAGCCCTCAGTGAGATTGAGGGACGACACAAGGA TCCAAGCAAGCCCTCAGTGAAATTGAGGGACGACACAAGGA Direct Loss 0.93352618883061 0 NA NA prediction 0.86705237766122 Functional Loss - STX3 ENSG00000166900 CDS Human protein_coding chr11:59560891 chr11:59560891 synonymous SNV . 0 21 hm7G_associated_SNPs_6696 0 0 1 0 2 STX3 chr11:59560987 5'GT 59560987 Upstream 97bp 6490 chr15 78566612 78566612 1 + G T UCEC 78566612 + 78566592 78566632 41 GGGATGCAGATCCACATCCAGCAGATCGGGCCGGGCATGGT GGGATGCAGATCCACATCCATCAGATCGGGCCGGGCATGGT Direct Loss 0.933515637359936 0 NA NA prediction 0.867031274719871 Functional Loss - DNAJA4 ENSG00000140403 CDS Human protein_coding chr15:78566612 chr15:78566612 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6697 0 0 0 0 1 DNAJA4 chr15:78566539 3'AG 78566539 Downstream 74bp 6491 chr7 49951644 49951644 1 + G A LUAD 49951644 + 49951624 49951664 41 TTTCAGGTCCAAACTGCTTTGCAGAAACCGCGGTGATCCCT TTTCAGGTCCAAACTGCTTTACAGAAACCGCGGTGATCCCT Direct Loss 0.933512699070801 0 NA NA prediction 0.867025398141603 Functional Loss - VWC2 ENSG00000188730 CDS Human protein_coding chr7:49951644 chr7:49951644 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6698 0 0 0 0 1 VWC2 chr7:49951630 3'AG 49951630 Downstream 15bp 6492 chr17 7554879 7554879 1 + G C BLCA 7554879 + 7554859 7554899 41 AGAGCTGCGGGCAGGTGGTTGAGGAGTGGAAGGAGTTCGTG AGAGCTGCGGGCAGGTGGTTCAGGAGTGGAAGGAGTTCGTG Direct Loss 0.933496785000033 0 NA NA prediction 0.866993570000065 Functional Loss - ATP1B2 ENSG00000129244 CDS Human protein_coding chr17:7554879 chr17:7554879 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6699 0 0 1 0 1 ATP1B2 chr17:7554948 5'GT 7554948 Upstream 70bp 6493 chr6 126669628 126669628 1 + G T COAD 126669628 + 126669608 126669648 41 ACAGGTAATTCTAAAGAAGAGCAGAGGTTAGAAGTCAAAGA ACAGGTAATTCTAAAGAAGATCAGAGGTTAGAAGTCAAAGA Direct Loss 0.933494371063636 0 NA NA prediction 0.866988742127272 Functional Loss - CENPW ENSG00000203760 CDS Human protein_coding chr6:126669628 chr6:126669628 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6700 0 0 1 0 1 CENPW chr6:126669612 3'AG 126669612 Downstream 17bp 6494 chr2 37316844 37316844 1 + G T UCEC 37316844 + 37316824 37316864 41 GAGAAGCCCGTCGAAAAGAAGAAAAGCAACAGGAAGCCAAT GAGAAGCCCGTCGAAAAGAATAAAAGCAACAGGAAGCCAAT Direct Loss 0.933493951224831 0 NA NA prediction 0.866987902449663 Functional Loss - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37316844 chr2:37316844 stopgain 1.000 1 21 hm7G_associated_SNPs_6701 0 0 1 0 1 GPATCH11 chr2:37316783 3'AG 37316783 Downstream 62bp 6495 chr3 100060005 100060005 1 + G T UCEC 100060005 + 100059985 100060025 41 TTACTAGCAAAGTATAGAAAGGTAAGTAGGAAGTGTGGCAT TTACTAGCAAAGTATAGAAATGTAAGTAGGAAGTGTGGCAT Direct Loss 0.933484357726789 0 NA NA prediction 0.866968715453578 Functional Loss - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100060005 chr3:100060005 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_6703 0 0 0 0 2 NIT2 chr3:100059917 3'AG 100059917 Downstream 89bp 6496 chr3 100060005 100060005 1 + G T UCEC 100060005 + 100059985 100060025 41 TTACTAGCAAAGTATAGAAAGGTAAGTAGGAAGTGTGGCAT TTACTAGCAAAGTATAGAAATGTAAGTAGGAAGTGTGGCAT Direct Loss 0.933484357726789 0 NA NA prediction 0.866968715453578 Functional Loss - NIT2 ENSG00000114021 CDS Human protein_coding chr3:100060005 chr3:100060005 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_6703 0 0 0 0 2 NIT2 chr3:100060005 5'GT 100060005 Upstream 1bp 6497 chr11 63978565 63978565 1 + G A BLCA 63978565 + 63978545 63978585 41 TGTCCCTGCTCCGGGCTCCTGAGAAGAAGGAGAAGAAGAAG TGTCCCTGCTCCGGGCTCCTAAGAAGAAGGAGAAGAAGAAG Direct Loss 0.933478509924125 0 NA NA prediction 0.86695701984825 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978565 chr11:63978565 nonsynonymous SNV 0.974 3 21 hm7G_associated_SNPs_6704 0 0 1 0 2 FERMT3 chr11:63978524 3'AG 63978524 Downstream 42bp 6498 chr11 63978565 63978565 1 + G A BLCA 63978565 + 63978545 63978585 41 TGTCCCTGCTCCGGGCTCCTGAGAAGAAGGAGAAGAAGAAG TGTCCCTGCTCCGGGCTCCTAAGAAGAAGGAGAAGAAGAAG Direct Loss 0.933478509924125 0 NA NA prediction 0.86695701984825 Functional Loss - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978565 chr11:63978565 nonsynonymous SNV 0.974 3 21 hm7G_associated_SNPs_6704 0 0 1 0 2 FERMT3 chr11:63978643 5'GT 63978643 Upstream 79bp 6499 chr12 57626352 57626352 1 + G A BRCA 57626352 + 57626332 57626372 41 CTCATTGACTACGCCCGCATGAGAGAGGTTGGTGGGGGGGG CTCATTGACTACGCCCGCATAAGAGAGGTTGGTGGGGGGGG Direct Loss 0.933471841743211 0 NA NA prediction 0.866943683486422 Functional Loss - SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626352 chr12:57626352 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_6705 0 0 1 0 2 SHMT2 chr12:57626266 3'AG 57626266 Downstream 87bp 6500 chr12 57626352 57626352 1 + G A BRCA 57626352 + 57626332 57626372 41 CTCATTGACTACGCCCGCATGAGAGAGGTTGGTGGGGGGGG CTCATTGACTACGCCCGCATAAGAGAGGTTGGTGGGGGGGG Direct Loss 0.933471841743211 0 NA NA prediction 0.866943683486422 Functional Loss - SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626352 chr12:57626352 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_6705 0 0 1 0 2 SHMT2 chr12:57626358 5'GT 57626358 Upstream 7bp 6501 chr2 189854849 189854849 1 + G A SKCM 189854849 + 189854829 189854869 41 CAGGTAGACCCGGACGACCTGGAGAGCGAGGATTGCCTGGA CAGGTAGACCCGGACGACCTAGAGAGCGAGGATTGCCTGGA Direct Loss 0.933468824530439 0 NA NA prediction 0.866937649060878 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189854849 chr2:189854849 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_6706 0 0 0 0 2 COL3A1 chr2:189854822 3'AG 189854822 Downstream 28bp 6502 chr2 189854849 189854849 1 + G A SKCM 189854849 + 189854829 189854869 41 CAGGTAGACCCGGACGACCTGGAGAGCGAGGATTGCCTGGA CAGGTAGACCCGGACGACCTAGAGAGCGAGGATTGCCTGGA Direct Loss 0.933468824530439 0 NA NA prediction 0.866937649060878 Functional Loss - COL3A1 ENSG00000168542 CDS Human protein_coding chr2:189854849 chr2:189854849 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_6706 0 0 0 0 2 COL3A1 chr2:189854875 5'GT 189854875 Upstream 27bp 6503 chr10 94373179 94373179 1 + G A BLCA 94373179 + 94373159 94373199 41 TTGGCCGTTCTGGAGCTGTTGATAAGAGAGCTCGGGAAGCT TTGGCCGTTCTGGAGCTGTTAATAAGAGAGCTCGGGAAGCT Direct Loss 0.933467926665008 0 NA NA prediction 0.866935853330016 Functional Loss - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94373179 chr10:94373179 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_6707 0 0 1 0 1 KIF11 chr10:94373134 3'AG 94373134 Downstream 46bp 6504 chr17 18005255 18005255 1 + G A BLCA 18005255 + 18005235 18005275 41 GTTTATAACAAAATCGACCAGATCTCCATGGAAGAGGTGGA GTTTATAACAAAATCGACCAAATCTCCATGGAAGAGGTGGA Direct Loss 0.933464956384924 0 NA NA prediction 0.866929912769848 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18005255 chr17:18005255 synonymous SNV . 0 21 hm7G_associated_SNPs_6709 0 0 1 0 2 DRG2 chr17:18005235 3'AG 18005235 Downstream 21bp 6505 chr17 18005255 18005255 1 + G A BLCA 18005255 + 18005235 18005275 41 GTTTATAACAAAATCGACCAGATCTCCATGGAAGAGGTGGA GTTTATAACAAAATCGACCAAATCTCCATGGAAGAGGTGGA Direct Loss 0.933464956384924 0 NA NA prediction 0.866929912769848 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18005255 chr17:18005255 synonymous SNV . 0 21 hm7G_associated_SNPs_6709 0 0 1 0 2 DRG2 chr17:18005311 5'GT 18005311 Upstream 57bp 6506 chr5 176868754 176868754 1 + G A COAD 176868754 + 176868734 176868774 41 CCAGGATTGCTGTGGAAACTGCAGCGACAGCGAGGAAGAGC CCAGGATTGCTGTGGAAACTACAGCGACAGCGAGGAAGAGC Direct Loss 0.933457325138565 0 NA NA prediction 0.866914650277131 Functional Loss - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176868754 chr5:176868754 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6711 0 0 1 0 1 GRK6 chr5:176868738 3'AG 176868738 Downstream 17bp 6507 chr10 26800720 26800720 1 + G A BLCA 26800720 + 26800700 26800740 41 GATAACAGCACAAAGTCACTGATGGTGGATGAGCGGCAGCT GATAACAGCACAAAGTCACTAATGGTGGATGAGCGGCAGCT Direct Loss 0.93345420118987 0 NA NA prediction 0.86690840237974 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26800720 chr10:26800720 synonymous SNV . 0 21 hm7G_associated_SNPs_6713 0 0 0 0 1 APBB1IP chr10:26800676 3'AG 26800676 Downstream 45bp 6508 chr3 47451199 47451199 1 + G A CESC 47451199 + 47451179 47451219 41 TATGAAGCCTATGAGGACCTGATGAAGAAGTCGCAGGAGGG TATGAAGCCTATGAGGACCTAATGAAGAAGTCGCAGGAGGG Direct Loss 0.933449469155066 0 NA NA prediction 0.866898938310132 Functional Loss - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47451199 chr3:47451199 synonymous SNV . 0 21 hm7G_associated_SNPs_6714 0 0 1 0 2 PTPN23 chr3:47451145 3'AG 47451145 Downstream 55bp 6509 chr3 47451199 47451199 1 + G A CESC 47451199 + 47451179 47451219 41 TATGAAGCCTATGAGGACCTGATGAAGAAGTCGCAGGAGGG TATGAAGCCTATGAGGACCTAATGAAGAAGTCGCAGGAGGG Direct Loss 0.933449469155066 0 NA NA prediction 0.866898938310132 Functional Loss - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47451199 chr3:47451199 synonymous SNV . 0 21 hm7G_associated_SNPs_6714 0 0 1 0 2 PTPN23 chr3:47451276 5'GT 47451276 Upstream 78bp 6510 chrX 47104483 47104483 1 + G A LUAD 47104483 + 47104463 47104503 41 ACTATGACGAGGTAGAGGCTGAGGTAAATGAGATCCCAGGG ACTATGACGAGGTAGAGGCTAAGGTAAATGAGATCCCAGGG Direct Loss 0.933447241498275 0 NA NA prediction 0.866894482996551 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47104483 chrX:47104483 nonsynonymous SNV 0.986 3 21 hm7G_associated_SNPs_6715 0 0 0 0 2 USP11 chrX:47104415 3'AG 47104415 Downstream 69bp 6511 chrX 47104483 47104483 1 + G A LUAD 47104483 + 47104463 47104503 41 ACTATGACGAGGTAGAGGCTGAGGTAAATGAGATCCCAGGG ACTATGACGAGGTAGAGGCTAAGGTAAATGAGATCCCAGGG Direct Loss 0.933447241498275 0 NA NA prediction 0.866894482996551 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47104483 chrX:47104483 nonsynonymous SNV 0.986 3 21 hm7G_associated_SNPs_6715 0 0 0 0 2 USP11 chrX:47104485 5'GT 47104485 Upstream 3bp 6512 chr4 79503336 79503336 1 + G T LUAD 79503336 + 79503316 79503356 41 GTTTTTTGATTTTAGGAGCTGAAAGATGACTTGAAGGGTGA GTTTTTTGATTTTAGGAGCTTAAAGATGACTTGAAGGGTGA Direct Loss 0.933439699865974 0 NA NA prediction 0.866879399731949 Functional Loss - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79503336 chr4:79503336 synonymous SNV . 0 21 hm7G_associated_SNPs_6716 0 0 0 0 1 ANXA3 chr4:79503331 3'AG 79503331 Downstream 6bp 6513 chr2 29016827 29016827 1 + G A LUSC 29016827 + 29016807 29016847 41 TTTGATAATGCTGGTGGAATGATGAGTGTGGATGAAACTTT TTTGATAATGCTGGTGGAATAATGAGTGTGGATGAAACTTT Direct Loss 0.933439637747964 0 NA NA prediction 0.866879275495929 Functional Loss - PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29016827 chr2:29016827 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6717 0 0 1 0 2 PPP1CB chr2:29016729 3'AG 29016729 Downstream 99bp 6514 chr2 29016827 29016827 1 + G A LUSC 29016827 + 29016807 29016847 41 TTTGATAATGCTGGTGGAATGATGAGTGTGGATGAAACTTT TTTGATAATGCTGGTGGAATAATGAGTGTGGATGAAACTTT Direct Loss 0.933439637747964 0 NA NA prediction 0.866879275495929 Functional Loss - PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29016827 chr2:29016827 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_6717 0 0 1 0 2 PPP1CB chr2:29016863 5'GT 29016863 Upstream 37bp 6515 chr14 105205672 105205672 1 + G A SKCM 105205672 + 105205652 105205692 41 CGTGTCCCCGCAGGCCTGAAGGACTGGGAGAAGAGGCTCAT CGTGTCCCCGCAGGCCTGAAAGACTGGGAGAAGAGGCTCAT Direct Loss 0.933433977806942 0 NA NA prediction 0.866867955613883 Functional Loss - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105205672 chr14:105205672 synonymous SNV . 0 21 hm7G_associated_SNPs_6718 0 0 1 0 2 ADSSL1 chr14:105205665 3'AG 105205665 Downstream 8bp 6516 chr14 105205672 105205672 1 + G A SKCM 105205672 + 105205652 105205692 41 CGTGTCCCCGCAGGCCTGAAGGACTGGGAGAAGAGGCTCAT CGTGTCCCCGCAGGCCTGAAAGACTGGGAGAAGAGGCTCAT Direct Loss 0.933433977806942 0 NA NA prediction 0.866867955613883 Functional Loss - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105205672 chr14:105205672 synonymous SNV . 0 21 hm7G_associated_SNPs_6718 0 0 1 0 2 ADSSL1 chr14:105205715 5'GT 105205715 Upstream 44bp 6517 chr4 4301741 4301741 1 + G C LAML 4301741 + 4301721 4301761 41 GAGCAGCGAATCCAAGGCCTGCTTTGTGACTGTATGTTGGT GAGCAGCGAATCCAAGGCCTCCTTTGTGACTGTATGTTGGT Direct Loss 0.933429311803977 0 NA NA prediction 0.866858623607954 Functional Loss - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4301741 chr4:4301741 synonymous SNV . 0 21 hm7G_associated_SNPs_6719 0 0 1 0 2 ZBTB49 chr4:4301654 3'AG 4301654 Downstream 88bp 6518 chr4 4301741 4301741 1 + G C LAML 4301741 + 4301721 4301761 41 GAGCAGCGAATCCAAGGCCTGCTTTGTGACTGTATGTTGGT GAGCAGCGAATCCAAGGCCTCCTTTGTGACTGTATGTTGGT Direct Loss 0.933429311803977 0 NA NA prediction 0.866858623607954 Functional Loss - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4301741 chr4:4301741 synonymous SNV . 0 21 hm7G_associated_SNPs_6719 0 0 1 0 2 ZBTB49 chr4:4301824 5'GT 4301824 Upstream 84bp 6519 chr14 74726400 74726400 1 + G T UCEC 74726400 + 74726380 74726420 41 TATGGGCTCTACGGGGCCATGGTGCGGCACTCCATCCCCCT TATGGGCTCTACGGGGCCATTGTGCGGCACTCCATCCCCCT Direct Loss 0.933427246780763 0 NA NA prediction 0.866854493561526 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74726400 chr14:74726400 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6721 0 0 0 0 2 VSX2 chr14:74726305 3'AG 74726305 Downstream 96bp 6520 chr14 74726400 74726400 1 + G T UCEC 74726400 + 74726380 74726420 41 TATGGGCTCTACGGGGCCATGGTGCGGCACTCCATCCCCCT TATGGGCTCTACGGGGCCATTGTGCGGCACTCCATCCCCCT Direct Loss 0.933427246780763 0 NA NA prediction 0.866854493561526 Functional Loss - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74726400 chr14:74726400 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6721 0 0 0 0 2 VSX2 chr14:74726485 5'GT 74726485 Upstream 86bp 6521 chr20 30672331 30672331 1 + G A STAD 30672331 + 30672311 30672351 41 AACTTGGAGCTGGGCAGTTTGGGGAAGTCTGGATGGGTAAG AACTTGGAGCTGGGCAGTTTAGGGAAGTCTGGATGGGTAAG Direct Loss 0.933421833553125 0 NA NA prediction 0.86684366710625 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30672331 chr20:30672331 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6723 0 0 0 0 1 HCK chr20:30672346 5'GT 30672346 Upstream 16bp 6522 chr10 12204226 12204226 1 + G T BLCA 12204226 + 12204206 12204246 41 CGGCAGGTAGCTAAACAGCTGAAAGAACAGCAGATGGTAAT CGGCAGGTAGCTAAACAGCTTAAAGAACAGCAGATGGTAAT Direct Loss 0.93342145021543 0 NA NA prediction 0.866842900430861 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12204226 chr10:12204226 synonymous SNV . 0 21 hm7G_associated_SNPs_6724 0 0 0 0 2 SEC61A2 chr10:12204212 3'AG 12204212 Downstream 15bp 6523 chr10 12204226 12204226 1 + G T BLCA 12204226 + 12204206 12204246 41 CGGCAGGTAGCTAAACAGCTGAAAGAACAGCAGATGGTAAT CGGCAGGTAGCTAAACAGCTTAAAGAACAGCAGATGGTAAT Direct Loss 0.93342145021543 0 NA NA prediction 0.866842900430861 Functional Loss - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12204226 chr10:12204226 synonymous SNV . 0 21 hm7G_associated_SNPs_6724 0 0 0 0 2 SEC61A2 chr10:12204288 5'GT 12204288 Upstream 63bp 6524 chr16 29825671 29825671 1 + G A STAD 29825671 + 29825651 29825691 41 CAGTCCCGGAACAGCCTGCAGCAGGGGGACGTGGACGGGGC CAGTCCCGGAACAGCCTGCAACAGGGGGACGTGGACGGGGC Direct Loss 0.933417862023557 0 NA NA prediction 0.866835724047113 Functional Loss - PRRT2 ENSG00000167371 CDS Human protein_coding chr16:29825671 chr16:29825671 synonymous SNV . 0 21 hm7G_associated_SNPs_6725 0 0 0 0 1 PRRT2 chr16:29825654 3'AG 29825654 Downstream 18bp 6525 chrY 2712199 2712199 1 + G T SARC 2712199 + 2712179 2712219 41 TCAGGAATAGACTCAAGTATGCGTTGACTGGAGATGAGGTA TCAGGAATAGACTCAAGTATTCGTTGACTGGAGATGAGGTA Direct Loss 0.933399061241178 0 NA NA prediction 0.866798122482355 Functional Loss - RPS4Y1 ENSG00000129824 CDS Human protein_coding chrY:2712199 chrY:2712199 nonsynonymous SNV 0.522 3 21 hm7G_associated_SNPs_6729 0 0 1 0 2 RPS4Y1 chrY:2712118 3'AG 2712118 Downstream 82bp 6526 chrY 2712199 2712199 1 + G T SARC 2712199 + 2712179 2712219 41 TCAGGAATAGACTCAAGTATGCGTTGACTGGAGATGAGGTA TCAGGAATAGACTCAAGTATTCGTTGACTGGAGATGAGGTA Direct Loss 0.933399061241178 0 NA NA prediction 0.866798122482355 Functional Loss - RPS4Y1 ENSG00000129824 CDS Human protein_coding chrY:2712199 chrY:2712199 nonsynonymous SNV 0.522 3 21 hm7G_associated_SNPs_6729 0 0 1 0 2 RPS4Y1 chrY:2712298 5'GT 2712298 Upstream 100bp 6527 chr7 139094370 139094370 1 + G T SARC 139094370 + 139094350 139094390 41 GCTGAAACGAAGAGAAGAGAGAGAGAGAGAAGAAAGGGAGA GCTGAAACGAAGAGAAGAGATAGAGAGAGAAGAAAGGGAGA Direct Loss 0.933387197399007 0 NA NA prediction 0.866774394798014 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094370 chr7:139094370 nonsynonymous SNV 0.981 4 21 hm7G_associated_SNPs_6731 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094309 3'AG 139094309 Downstream 62bp 6528 chr7 139094370 139094370 1 + G T SARC 139094370 + 139094350 139094390 41 GCTGAAACGAAGAGAAGAGAGAGAGAGAGAAGAAAGGGAGA GCTGAAACGAAGAGAAGAGATAGAGAGAGAAGAAAGGGAGA Direct Loss 0.933387197399007 0 NA NA prediction 0.866774394798014 Functional Loss - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139094370 chr7:139094370 nonsynonymous SNV 0.981 4 21 hm7G_associated_SNPs_6731 0 0 1 0 2 C7orf55-LUC7L2;LUC7L2 chr7:139094400 5'GT 139094400 Upstream 31bp 6529 chr11 70269075 70269075 1 + G T THCA 70269075 + 70269055 70269095 41 AAGGATTCGGCGGGAAGTATGGGGTGCAGAAGGATCGGATG AAGGATTCGGCGGGAAGTATTGGGTGCAGAAGGATCGGATG Direct Loss 0.933384848907378 0 NA NA prediction 0.866769697814756 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70269075 chr11:70269075 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_6732 0 0 1 0 2 CTTN chr11:70269046 3'AG 70269046 Downstream 30bp 6530 chr11 70269075 70269075 1 + G T THCA 70269075 + 70269055 70269095 41 AAGGATTCGGCGGGAAGTATGGGGTGCAGAAGGATCGGATG AAGGATTCGGCGGGAAGTATTGGGTGCAGAAGGATCGGATG Direct Loss 0.933384848907378 0 NA NA prediction 0.866769697814756 Functional Loss - CTTN ENSG00000085733 CDS Human protein_coding chr11:70269075 chr11:70269075 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_6732 0 0 1 0 2 CTTN chr11:70269101 5'GT 70269101 Upstream 27bp 6531 chr1 161069895 161069895 1 + G A LAML 161069895 + 161069875 161069915 41 ACTTCCCCTGTGCAGATCGTGGGATGAAACGCATGGGCCAT ACTTCCCCTGTGCAGATCGTAGGATGAAACGCATGGGCCAT Direct Loss 0.933383238500185 0 NA NA prediction 0.86676647700037 Functional Loss - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161069895 chr1:161069895 nonsynonymous SNV 0.849 0 21 hm7G_associated_SNPs_6733 0 0 0 0 1 KLHDC9 chr1:161069851 3'AG 161069851 Downstream 45bp 6532 chr3 160968072 160968072 1 + G A BLCA 160968072 + 160968052 160968092 41 AAGATTTTCTTGAAGATCTTGAAGAAGATGAGGCAATTCGA AAGATTTTCTTGAAGATCTTAAAGAAGATGAGGCAATTCGA Direct Loss 0.933376210634976 0 NA NA prediction 0.866752421269951 Functional Loss - NMD3 ENSG00000169251 CDS Human protein_coding chr3:160968072 chr3:160968072 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6735 0 0 1 0 2 NMD3 chr3:160968044 3'AG 160968044 Downstream 29bp 6533 chr3 160968072 160968072 1 + G A BLCA 160968072 + 160968052 160968092 41 AAGATTTTCTTGAAGATCTTGAAGAAGATGAGGCAATTCGA AAGATTTTCTTGAAGATCTTAAAGAAGATGAGGCAATTCGA Direct Loss 0.933376210634976 0 NA NA prediction 0.866752421269951 Functional Loss - NMD3 ENSG00000169251 CDS Human protein_coding chr3:160968072 chr3:160968072 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6735 0 0 1 0 2 NMD3 chr3:160968114 5'GT 160968114 Upstream 43bp 6534 chr19 11553320 11553320 1 + G T UCEC 11553320 + 11553300 11553340 41 GCCAAAGAGCAGCACCAGAAGCTGTGGGAAGGTATGGCAGA GCCAAAGAGCAGCACCAGAATCTGTGGGAAGGTATGGCAGA Direct Loss 0.933368920693865 0 NA NA prediction 0.86673784138773 Functional Loss - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11553320 chr19:11553320 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_6737 0 0 1 0 1 PRKCSH chr19:11553330 5'GT 11553330 Upstream 11bp 6535 chr2 228754656 228754656 1 + G T COAD 228754656 + 228754636 228754676 41 ACAGAGCAAGTCAAACTTTTGATACAGAGGTTGCAAGAGAA ACAGAGCAAGTCAAACTTTTTATACAGAGGTTGCAAGAGAA Direct Loss 0.933359612564408 0 NA NA prediction 0.866719225128816 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228754656 chr2:228754656 nonsynonymous SNV 0.151 3 21 hm7G_associated_SNPs_6741 0 0 0 1 2 DAW1 chr2:228754572 3'AG 228754572 Downstream 85bp 6536 chr2 228754656 228754656 1 + G T COAD 228754656 + 228754636 228754676 41 ACAGAGCAAGTCAAACTTTTGATACAGAGGTTGCAAGAGAA ACAGAGCAAGTCAAACTTTTTATACAGAGGTTGCAAGAGAA Direct Loss 0.933359612564408 0 NA NA prediction 0.866719225128816 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228754656 chr2:228754656 nonsynonymous SNV 0.151 3 21 hm7G_associated_SNPs_6741 0 0 0 1 2 DAW1 chr2:228754716 5'GT 228754716 Upstream 61bp 6537 chr7 27855995 27855995 1 + G A STAD 27855995 + 27855975 27856015 41 AAAGGAGTCTAGAAAATCCAGCAGAAAGGAAAATGGAAGGT AAAGGAGTCTAGAAAATCCAACAGAAAGGAAAATGGAAGGT Direct Loss 0.933358155960661 0 NA NA prediction 0.866716311921322 Functional Loss - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27855995 chr7:27855995 nonsynonymous SNV 0.924 0 21 hm7G_associated_SNPs_6742 0 0 1 0 2 TAX1BP1 chr7:27855968 3'AG 27855968 Downstream 28bp 6538 chr7 27855995 27855995 1 + G A STAD 27855995 + 27855975 27856015 41 AAAGGAGTCTAGAAAATCCAGCAGAAAGGAAAATGGAAGGT AAAGGAGTCTAGAAAATCCAACAGAAAGGAAAATGGAAGGT Direct Loss 0.933358155960661 0 NA NA prediction 0.866716311921322 Functional Loss - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27855995 chr7:27855995 nonsynonymous SNV 0.924 0 21 hm7G_associated_SNPs_6742 0 0 1 0 2 TAX1BP1 chr7:27856013 5'GT 27856013 Upstream 19bp 6539 chr14 24646361 24646361 1 + G A PAAD 24646361 + 24646341 24646381 41 TCTGGACAGGGTGAACGGGAGCTCCCAGAGGTCAGCCGCCG TCTGGACAGGGTGAACGGGAACTCCCAGAGGTCAGCCGCCG Direct Loss 0.933354270811137 0 NA NA prediction 0.866708541622274 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24646361 chr14:24646361 synonymous SNV . 0 21 hm7G_associated_SNPs_6744 0 0 1 0 1 REC8 chr14:24646428 5'GT 24646428 Upstream 68bp 6540 chr17 40940344 40940344 1 + G T LUAD 40940344 + 40940324 40940364 41 GCTTCAGGCCTTAGCGATGTGGGAGAAGGGATGGGACAAAT GCTTCAGGCCTTAGCGATGTTGGAGAAGGGATGGGACAAAT Direct Loss 0.933348708286822 0 NA NA prediction 0.866697416573644 Functional Loss - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940344 chr17:40940344 synonymous SNV . 0 21 hm7G_associated_SNPs_6747 0 0 1 0 1 WNK4 chr17:40940308 3'AG 40940308 Downstream 37bp 6541 chr6 139106381 139106381 1 + G A BLCA 139106381 + 139106361 139106401 41 AAGGAAATGAATGTTCCATTGAACAGATGGAACATGTTCGG AAGGAAATGAATGTTCCATTAAACAGATGGAACATGTTCGG Direct Loss 0.933346166441332 0 NA NA prediction 0.866692332882664 Functional Loss - CCDC28A ENSG00000024862 CDS Human protein_coding chr6:139106381 chr6:139106381 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_6748 0 0 0 0 1 CCDC28A chr6:139106364 3'AG 139106364 Downstream 18bp 6542 chrX 118544310 118544310 1 + G A LUSC 118544310 + 118544290 118544330 41 TCCTTTCCCTTTGAGACCGTGAAGAGAAAGATGCAGGTGAG TCCTTTCCCTTTGAGACCGTAAAGAGAAAGATGCAGGTGAG Direct Loss 0.933338861461593 0 NA NA prediction 0.866677722923185 Functional Loss - SLC25A43 ENSG00000077713 CDS Human protein_coding chrX:118544310 chrX:118544310 synonymous SNV . 0 21 hm7G_associated_SNPs_6749 0 0 1 0 1 SLC25A43 chrX:118544325 5'GT 118544325 Upstream 16bp 6543 chr5 79375746 79375746 1 + G T LUAD 79375746 + 79375726 79375766 41 AGGCTGTGAAGTCTAAGACAGGTCCAGGGGAGCATCTCCGG AGGCTGTGAAGTCTAAGACATGTCCAGGGGAGCATCTCCGG Direct Loss 0.933321801709957 0 NA NA prediction 0.866643603419915 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79375746 chr5:79375746 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_6753 0 0 0 0 1 THBS4 chr5:79375728 3'AG 79375728 Downstream 19bp 6544 chr17 64880685 64880685 1 + G A SKCM 64880685 + 64880665 64880705 41 ATCTCCAGCATCAACGATGAGATGCTCAACAGGACCAAGGA ATCTCCAGCATCAACGATGAAATGCTCAACAGGACCAAGGA Direct Loss 0.933298996624257 0 NA NA prediction 0.866597993248514 Functional Loss - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64880685 chr17:64880685 synonymous SNV . 0 21 hm7G_associated_SNPs_6756 0 0 0 0 1 CACNG5 chr17:64880778 5'GT 64880778 Upstream 94bp 6545 chr10 124249007 124249007 1 + G A SKCM 124249007 + 124248987 124249027 41 ATTGTGTCGGAAGATGGACTGATCGTGACAAATGCCCACGT ATTGTGTCGGAAGATGGACTAATCGTGACAAATGCCCACGT Direct Loss 0.933292694624913 0 NA NA prediction 0.866585389249827 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124249007 chr10:124249007 synonymous SNV . 0 21 hm7G_associated_SNPs_6757 0 0 0 0 1 HTRA1 chr10:124248938 3'AG 124248938 Downstream 70bp 6546 chr19 49868844 49868844 1 + G T LUAD 49868844 + 49868824 49868864 41 TCCCTGGGAACTACCACAAAGAGGAGAACCAGGAGCACCAG TCCCTGGGAACTACCACAAATAGGAGAACCAGGAGCACCAG Direct Loss 0.933289987749704 0 NA NA prediction 0.866579975499408 Functional Loss - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49868844 chr19:49868844 stopgain 0.980 1 21 hm7G_associated_SNPs_6758 0 0 0 0 1 DKKL1 chr19:49868906 5'GT 49868906 Upstream 63bp 6547 chr14 24632271 24632271 1 + G C CESC 24632271 + 24632251 24632291 41 GTGCACTCAACAAGAGTTCTGAATTTAAGGAGGTTCCTGAG GTGCACTCAACAAGAGTTCTCAATTTAAGGAGGTTCCTGAG Direct Loss 0.933288230458737 0 NA NA prediction 0.866576460917473 Functional Loss - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24632271 chr14:24632271 nonsynonymous SNV 0.950 4 21 hm7G_associated_SNPs_6759 0 0 0 0 1 IRF9 chr14:24632358 5'GT 24632358 Upstream 88bp 6548 chr2 228762942 228762942 1 + G A SKCM 228762942 + 228762922 228762962 41 TGATAAAACTTGTAAACTCTGGAGTGTGGAAACAGGAAAAT TGATAAAACTTGTAAACTCTAGAGTGTGGAAACAGGAAAAT Direct Loss 0.933279798622959 0 NA NA prediction 0.866559597245919 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228762942 chr2:228762942 stopgain 0.997 1 21 hm7G_associated_SNPs_6761 0 0 0 0 2 DAW1 chr2:228762898 3'AG 228762898 Downstream 45bp 6549 chr2 228762942 228762942 1 + G A SKCM 228762942 + 228762922 228762962 41 TGATAAAACTTGTAAACTCTGGAGTGTGGAAACAGGAAAAT TGATAAAACTTGTAAACTCTAGAGTGTGGAAACAGGAAAAT Direct Loss 0.933279798622959 0 NA NA prediction 0.866559597245919 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228762942 chr2:228762942 stopgain 0.997 1 21 hm7G_associated_SNPs_6761 0 0 0 0 2 DAW1 chr2:228762997 5'GT 228762997 Upstream 56bp 6550 chr19 8503337 8503337 1 + G A BLCA 8503337 + 8503317 8503357 41 ACCAACCAGAAAGTTCGCCTGAAGATCCGGGAGGCGGACAG ACCAACCAGAAAGTTCGCCTAAAGATCCGGGAGGCGGACAG Direct Loss 0.933266625684734 0 NA NA prediction 0.866533251369468 Functional Loss - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8503337 chr19:8503337 synonymous SNV . 0 21 hm7G_associated_SNPs_6765 0 0 0 0 1 MARCH2 chr19:8503272 3'AG 8503272 Downstream 66bp 6551 chr15 66727503 66727503 1 + G A LUSC 66727503 + 66727483 66727523 41 GACTTTGAGAAGATCAGTGAGCTGGGGGCTGGCAATGGCGG GACTTTGAGAAGATCAGTGAACTGGGGGCTGGCAATGGCGG Direct Loss 0.933266174571139 0 NA NA prediction 0.866532349142279 Functional Loss - MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66727503 chr15:66727503 synonymous SNV . 0 21 hm7G_associated_SNPs_6766 0 0 1 0 1 MAP2K1 chr15:66727575 5'GT 66727575 Upstream 73bp 6552 chr3 195395454 195395454 1 + G T LUSC 195395454 + 195395434 195395474 41 ACCAGCGACGGCACGGCCATGATCACCAGGGCAGGCCTTCC ACCAGCGACGGCACGGCCATTATCACCAGGGCAGGCCTTCC Direct Loss 0.933264912228399 0 NA NA prediction 0.866529824456799 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195395454 chr3:195395454 . . 0 21 hm7G_associated_SNPs_6767 0 0 0 0 2 SDHAP2 chr3:195395390 3'AG 195395390 Downstream 65bp 6553 chr3 195395454 195395454 1 + G T LUSC 195395454 + 195395434 195395474 41 ACCAGCGACGGCACGGCCATGATCACCAGGGCAGGCCTTCC ACCAGCGACGGCACGGCCATTATCACCAGGGCAGGCCTTCC Direct Loss 0.933264912228399 0 NA NA prediction 0.866529824456799 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195395454 chr3:195395454 . . 0 21 hm7G_associated_SNPs_6767 0 0 0 0 2 SDHAP2 chr3:195395512 5'GT 195395512 Upstream 59bp 6554 chr11 66612374 66612374 1 + G T UCEC 66612374 + 66612354 66612394 41 GCCCGCTGCCTCACAGACATGCGTTGGCTGCGGAACCAAGT GCCCGCTGCCTCACAGACATTCGTTGGCTGCGGAACCAAGT Direct Loss 0.933263665911646 0 NA NA prediction 0.866527331823292 Functional Loss - RCE1 ENSG00000173653 CDS Human protein_coding chr11:66612374 chr11:66612374 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6768 0 0 1 0 1 RCE1 chr11:66612340 3'AG 66612340 Downstream 35bp 6555 chr3 46621261 46621261 1 + G T LUAD 46621261 + 46621241 46621281 41 ACAGAACCTGCTGCCTGAATGGGGGAACCTGCATGCTGGGG ACAGAACCTGCTGCCTGAATTGGGGAACCTGCATGCTGGGG Direct Loss 0.933262911810449 0 NA NA prediction 0.866525823620899 Functional Loss - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621261 chr3:46621261 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6769 0 0 0 0 1 TDGF1 chr3:46621229 3'AG 46621229 Downstream 33bp 6556 chr2 160609008 160609008 1 + G A BLCA 160609008 + 160608988 160609028 41 TAATTTGCTGATAGAGCCATGCAAGTGCACAGGAAGTTTGC TAATTTGCTGATAGAGCCATACAAGTGCACAGGAAGTTTGC Direct Loss 0.933262856601051 0 NA NA prediction 0.866525713202102 Functional Loss - MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160609008 chr2:160609008 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_6770 0 0 1 0 2 MARCH7 chr2:160608913 3'AG 160608913 Downstream 96bp 6557 chr2 160609008 160609008 1 + G A BLCA 160609008 + 160608988 160609028 41 TAATTTGCTGATAGAGCCATGCAAGTGCACAGGAAGTTTGC TAATTTGCTGATAGAGCCATACAAGTGCACAGGAAGTTTGC Direct Loss 0.933262856601051 0 NA NA prediction 0.866525713202102 Functional Loss - MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160609008 chr2:160609008 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_6770 0 0 1 0 2 MARCH7 chr2:160609082 5'GT 160609082 Upstream 75bp 6558 chr1 26153311 26153311 1 + G T LIHC 26153311 + 26153291 26153331 41 TTGCAAAGATAGTGGCAGCTGATGCAGGTAGGAGCCCCTGT TTGCAAAGATAGTGGCAGCTTATGCAGGTAGGAGCCCCTGT Direct Loss 0.933257432103736 0 NA NA prediction 0.866514864207472 Functional Loss - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26153311 chr1:26153311 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_6773 0 0 1 0 1 MTFR1L chr1:26153317 5'GT 26153317 Upstream 7bp 6559 chr7 102047908 102047908 1 + G A LUSC 102047908 + 102047888 102047928 41 TTAAAAGAGAAGAAATTACTGGCAAAGAAGATGAAACTTGA TTAAAAGAGAAGAAATTACTAGCAAAGAAGATGAAACTTGA Direct Loss 0.933257200610326 0 NA NA prediction 0.866514401220652 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102047908 chr7:102047908 synonymous SNV . 0 21 hm7G_associated_SNPs_6774 0 0 1 0 2 PRKRIP1 chr7:102047881 3'AG 102047881 Downstream 28bp 6560 chr7 102047908 102047908 1 + G A LUSC 102047908 + 102047888 102047928 41 TTAAAAGAGAAGAAATTACTGGCAAAGAAGATGAAACTTGA TTAAAAGAGAAGAAATTACTAGCAAAGAAGATGAAACTTGA Direct Loss 0.933257200610326 0 NA NA prediction 0.866514401220652 Functional Loss - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102047908 chr7:102047908 synonymous SNV . 0 21 hm7G_associated_SNPs_6774 0 0 1 0 2 PRKRIP1 chr7:102047945 5'GT 102047945 Upstream 38bp 6561 chr11 111965577 111965577 1 + G A BLCA 111965577 + 111965557 111965597 41 GTTCATGGGGATGCCTTGCAGAAAGCTGCCAAGGCAGGGCT GTTCATGGGGATGCCTTGCAAAAAGCTGCCAAGGCAGGGCT Direct Loss 0.933254106464892 0 NA NA prediction 0.866508212929785 Functional Loss - SDHD ENSG00000204370 CDS Human protein_coding chr11:111965577 chr11:111965577 nonsynonymous SNV 0.901 1 21 hm7G_associated_SNPs_6775 0 0 1 0 1 SDHD chr11:111965529 3'AG 111965529 Downstream 49bp 6562 chrX 51637403 51637403 1 + G T UCEC 51637403 + 51637383 51637423 41 GCCAGAGGGACAGGAGCCATGGCTCAGAAAATGGACTGTGG GCCAGAGGGACAGGAGCCATTGCTCAGAAAATGGACTGTGG Direct Loss 0.933252097115185 0 NA NA prediction 0.86650419423037 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637403 chrX:51637403 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6776 0 0 1 0 2 MAGED1 chrX:51637365 3'AG 51637365 Downstream 39bp 6563 chrX 51637403 51637403 1 + G T UCEC 51637403 + 51637383 51637423 41 GCCAGAGGGACAGGAGCCATGGCTCAGAAAATGGACTGTGG GCCAGAGGGACAGGAGCCATTGCTCAGAAAATGGACTGTGG Direct Loss 0.933252097115185 0 NA NA prediction 0.86650419423037 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51637403 chrX:51637403 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6776 0 0 1 0 2 MAGED1 chrX:51637445 5'GT 51637445 Upstream 43bp 6564 chr14 89338042 89338042 1 + G T LUAD 89338042 + 89338022 89338062 41 AGAAGAGGCAGCTGATGTCTGGTACAACTTGGGACATGTAG AGAAGAGGCAGCTGATGTCTTGTACAACTTGGGACATGTAG Direct Loss 0.933248351920612 0 NA NA prediction 0.866496703841224 Functional Loss - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89338042 chr14:89338042 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6778 0 0 1 0 1 TTC8 chr14:89338067 5'GT 89338067 Upstream 26bp 6565 chr4 147561045 147561045 1 + G T UCEC 147561045 + 147561025 147561065 41 ATATTCGGCGGGCTGGATGAGAGTCTGCTGGCCCGCGCCGA ATATTCGGCGGGCTGGATGATAGTCTGCTGGCCCGCGCCGA Direct Loss 0.933246492260673 0 NA NA prediction 0.866492984521346 Functional Loss - POU4F2 ENSG00000151615 CDS Human protein_coding chr4:147561045 chr4:147561045 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6779 0 0 0 0 1 POU4F2 chr4:147561019 3'AG 147561019 Downstream 27bp 6566 chr11 77924770 77924770 1 + G A BLCA 77924770 + 77924750 77924790 41 CGCACTGGGGGAGGGGCTTTGATGAAGACAAGGATGAGGAT CGCACTGGGGGAGGGGCTTTAATGAAGACAAGGATGAGGAT Direct Loss 0.933243031901599 0 NA NA prediction 0.866486063803198 Functional Loss - USP35 ENSG00000118369 CDS Human protein_coding chr11:77924770 chr11:77924770 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_6781 0 0 0 0 1 USP35 chr11:77924692 3'AG 77924692 Downstream 79bp 6567 chr8 23115896 23115896 1 + G A UCEC 23115896 + 23115876 23115916 41 GAGAAGCGCATCGAGGCCTTGCATGCCAAGCTGGACACTGT GAGAAGCGCATCGAGGCCTTACATGCCAAGCTGGACACTGT Direct Loss 0.933242903660014 0 NA NA prediction 0.866485807320027 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23115896 chr8:23115896 synonymous SNV . 0 21 hm7G_associated_SNPs_6782 0 0 0 0 2 CHMP7 chr8:23115843 3'AG 23115843 Downstream 54bp 6568 chr8 23115896 23115896 1 + G A UCEC 23115896 + 23115876 23115916 41 GAGAAGCGCATCGAGGCCTTGCATGCCAAGCTGGACACTGT GAGAAGCGCATCGAGGCCTTACATGCCAAGCTGGACACTGT Direct Loss 0.933242903660014 0 NA NA prediction 0.866485807320027 Functional Loss - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23115896 chr8:23115896 synonymous SNV . 0 21 hm7G_associated_SNPs_6782 0 0 0 0 2 CHMP7 chr8:23115962 5'GT 23115962 Upstream 67bp 6569 chr9 138416984 138416984 1 + G T LUSC 138416984 + 138416964 138417004 41 TCCTTTTCCTGCAGAAACCTGCTCTCCAGGGAGCGATTAGG TCCTTTTCCTGCAGAAACCTTCTCTCCAGGGAGCGATTAGG Direct Loss 0.933242827620947 0 NA NA prediction 0.866485655241894 Functional Loss - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138416984 chr9:138416984 nonsynonymous SNV 0.806 4 21 hm7G_associated_SNPs_6783 0 0 0 0 1 LCN1 chr9:138416978 3'AG 138416978 Downstream 7bp 6570 chr15 32983929 32983929 1 + G A READ 32983929 + 32983909 32983949 41 AGAACAAGAAACTCCTTTACGAGAAGATGAAGGGAGGAGAG AGAACAAGAAACTCCTTTACAAGAAGATGAAGGGAGGAGAG Direct Loss 0.933238439404597 0 NA NA prediction 0.866476878809194 Functional Loss - SCG5 ENSG00000166922 CDS Human protein_coding chr15:32983929 chr15:32983929 nonsynonymous SNV 0.988 1 21 hm7G_associated_SNPs_6785 0 0 1 0 1 SCG5 chr15:32983911 3'AG 32983911 Downstream 19bp 6571 chr9 130427593 130427593 1 + G A STAD 130427593 + 130427573 130427613 41 TCGATGCCTATAAAGCTGATGATCCAACAATGGGGGAGGTA TCGATGCCTATAAAGCTGATAATCCAACAATGGGGGAGGTA Direct Loss 0.933232640159804 0 NA NA prediction 0.866465280319607 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130427593 chr9:130427593 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_6787 0 0 0 0 2 STXBP1 chr9:130427526 3'AG 130427526 Downstream 68bp 6572 chr9 130427593 130427593 1 + G A STAD 130427593 + 130427573 130427613 41 TCGATGCCTATAAAGCTGATGATCCAACAATGGGGGAGGTA TCGATGCCTATAAAGCTGATAATCCAACAATGGGGGAGGTA Direct Loss 0.933232640159804 0 NA NA prediction 0.866465280319607 Functional Loss - STXBP1 ENSG00000136854 CDS Human protein_coding chr9:130427593 chr9:130427593 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_6787 0 0 0 0 2 STXBP1 chr9:130427610 5'GT 130427610 Upstream 18bp 6573 chr17 28499576 28499576 1 + G T UCEC 28499576 + 28499556 28499596 41 ACAGACCTCTGTGAGTGAAAGCCTTCAGAGGGAAGCTGCTA ACAGACCTCTGTGAGTGAAATCCTTCAGAGGGAAGCTGCTA Direct Loss 0.933215058560607 0 NA NA prediction 0.866430117121215 Functional Loss - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28499576 chr17:28499576 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6789 0 0 1 0 2 NSRP1 chr17:28499560 3'AG 28499560 Downstream 17bp 6574 chr17 28499576 28499576 1 + G T UCEC 28499576 + 28499556 28499596 41 ACAGACCTCTGTGAGTGAAAGCCTTCAGAGGGAAGCTGCTA ACAGACCTCTGTGAGTGAAATCCTTCAGAGGGAAGCTGCTA Direct Loss 0.933215058560607 0 NA NA prediction 0.866430117121215 Functional Loss - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28499576 chr17:28499576 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6789 0 0 1 0 2 NSRP1 chr17:28499616 5'GT 28499616 Upstream 41bp 6575 chr14 23938924 23938924 1 + G A LUAD 23938924 + 23938904 23938944 41 GAAGGGGTGGGCTTTGCGAAGATGGCGGCGCTGGTGAGTTT GAAGGGGTGGGCTTTGCGAAAATGGCGGCGCTGGTGAGTTT Direct Loss 0.933211259053822 0 NA NA prediction 0.866422518107645 Functional Loss - NGDN ENSG00000129460 UTR5 Human protein_coding chr14:23938924 chr14:23938924 . . 0 21 hm7G_associated_SNPs_6791 0 0 1 0 1 NGDN chr14:23938936 5'GT 23938936 Upstream 13bp 6576 chr2 27438348 27438348 1 + G A LGG 27438348 + 27438328 27438368 41 TGTGTACTTTGCAGAGACCTGCAAGCAAACCCCCTCAAAGG TGTGTACTTTGCAGAGACCTACAAGCAAACCCCCTCAAAGG Direct Loss 0.933210453453678 0 NA NA prediction 0.866420906907355 Functional Loss - ATRAID ENSG00000138085 CDS Human protein_coding chr2:27438348 chr2:27438348 synonymous SNV . 0 21 hm7G_associated_SNPs_6792 0 0 1 0 2 ATRAID chr2:27438342 3'AG 27438342 Downstream 7bp 6577 chr2 27438348 27438348 1 + G A LGG 27438348 + 27438328 27438368 41 TGTGTACTTTGCAGAGACCTGCAAGCAAACCCCCTCAAAGG TGTGTACTTTGCAGAGACCTACAAGCAAACCCCCTCAAAGG Direct Loss 0.933210453453678 0 NA NA prediction 0.866420906907355 Functional Loss - ATRAID ENSG00000138085 CDS Human protein_coding chr2:27438348 chr2:27438348 synonymous SNV . 0 21 hm7G_associated_SNPs_6792 0 0 1 0 2 ATRAID chr2:27438413 5'GT 27438413 Upstream 66bp 6578 chr17 72246480 72246480 1 + G T SARC 72246480 + 72246460 72246500 41 GCTGACCGCCATGGTGGACTGCCGAGGGCTGCACAAGGTGC GCTGACCGCCATGGTGGACTTCCGAGGGCTGCACAAGGTGC Direct Loss 0.933203792782707 0 NA NA prediction 0.866407585565414 Functional Loss - TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72246480 chr17:72246480 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_6795 0 0 0 0 2 TTYH2 chr17:72246404 3'AG 72246404 Downstream 77bp 6579 chr17 72246480 72246480 1 + G T SARC 72246480 + 72246460 72246500 41 GCTGACCGCCATGGTGGACTGCCGAGGGCTGCACAAGGTGC GCTGACCGCCATGGTGGACTTCCGAGGGCTGCACAAGGTGC Direct Loss 0.933203792782707 0 NA NA prediction 0.866407585565414 Functional Loss - TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72246480 chr17:72246480 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_6795 0 0 0 0 2 TTYH2 chr17:72246496 5'GT 72246496 Upstream 17bp 6580 chrX 128699795 128699795 1 + G A rs137884245 128699795 + 128699775 128699815 41 ATTATAGACTTTGCATGCCTGATGCCAATGAGGTGAAAAGT ATTATAGACTTTGCATGCCTAATGCCAATGAGGTGAAAAGT Direct Loss 0.933191423976714 0 NA NA prediction 0.866382847953428 Functional Loss - OCRL ENSG00000122126 CDS Human protein_coding chrX:128699795 chrX:128699795 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6800 0 0 1 0 1 OCRL chrX:128699860 5'GT 128699860 Upstream 66bp 6581 chrX 52842245 52842245 1 + G T LUAD 52842245 + 52842225 52842265 41 CTGGTCAGAAGAGAGAAGATGATCAGGGTGCAGCTGAGATT CTGGTCAGAAGAGAGAAGATTATCAGGGTGCAGCTGAGATT Direct Loss 0.933182972580081 0 NA NA prediction 0.866365945160162 Functional Loss - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52842245 chrX:52842245 nonsynonymous SNV 0.002 3 21 hm7G_associated_SNPs_6804 0 0 0 0 2 XAGE5 chrX:52842164 3'AG 52842164 Downstream 82bp 6582 chrX 52842245 52842245 1 + G T LUAD 52842245 + 52842225 52842265 41 CTGGTCAGAAGAGAGAAGATGATCAGGGTGCAGCTGAGATT CTGGTCAGAAGAGAGAAGATTATCAGGGTGCAGCTGAGATT Direct Loss 0.933182972580081 0 NA NA prediction 0.866365945160162 Functional Loss - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52842245 chrX:52842245 nonsynonymous SNV 0.002 3 21 hm7G_associated_SNPs_6804 0 0 0 0 2 XAGE5 chrX:52842269 5'GT 52842269 Upstream 25bp 6583 chr7 127240330 127240330 1 + G A rs35223517 127240330 + 127240310 127240350 41 GCCCTCAACTTCTGTATCGAGCTTCAGGGGAGCAACTTACT GCCCTCAACTTCTGTATCGAACTTCAGGGGAGCAACTTACT Direct Loss 0.933163541653698 0 NA NA prediction 0.866327083307397 Functional Loss - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127240330 chr7:127240330 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_6806 0 0 0 0 2 FSCN3 chr7:127240248 3'AG 127240248 Downstream 83bp 6584 chr7 127240330 127240330 1 + G A rs35223517 127240330 + 127240310 127240350 41 GCCCTCAACTTCTGTATCGAGCTTCAGGGGAGCAACTTACT GCCCTCAACTTCTGTATCGAACTTCAGGGGAGCAACTTACT Direct Loss 0.933163541653698 0 NA NA prediction 0.866327083307397 Functional Loss - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127240330 chr7:127240330 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_6806 0 0 0 0 2 FSCN3 chr7:127240253 3'AG 127240253 Downstream 78bp 6585 chr17 73999455 73999455 1 + G A rs137860138 73999455 + 73999435 73999475 41 GAGATTGTGCCCAATCTGGAGCCAGAGGGCAGGGACCTGCT GAGATTGTGCCCAATCTGGAACCAGAGGGCAGGGACCTGCT Direct Loss 0.933146303530151 0 NA NA prediction 0.866292607060302 Functional Loss - CDK3 ENSG00000250506 CDS Human protein_coding chr17:73999455 chr17:73999455 synonymous SNV . 0 21 hm7G_associated_SNPs_6808 0 0 1 0 1 CDK3 chr17:73999479 5'GT 73999479 Upstream 25bp 6586 chrX 13651116 13651116 1 + G T UCEC 13651116 + 13651096 13651136 41 ATTATTAGATCATTTTTGAAGCAGAACGTGGCAAGGGCAAA ATTATTAGATCATTTTTGAATCAGAACGTGGCAAGGGCAAA Direct Loss 0.933143786623213 0 NA NA prediction 0.866287573246425 Functional Loss - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13651116 chrX:13651116 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6809 0 0 0 0 1 EGFL6 chrX:13651104 3'AG 13651104 Downstream 13bp 6587 chr15 28632821 28632821 1 + G T CESC 28632821 + 28632801 28632841 41 CCTAGCATCCCACAGGACCTGGAGAGCAGGGAGGCCATGGT CCTAGCATCCCACAGGACCTTGAGAGCAGGGAGGCCATGGT Direct Loss 0.933140691806019 0 NA NA prediction 0.866281383612038 Functional Loss - GOLGA8F;GOLGA8G ENSG00000153684 CDS Human protein_coding chr15:28632821 chr15:28632821 synonymous SNV . 0 21 hm7G_associated_SNPs_6811 0 0 0 0 1 GOLGA8F;GOLGA8G chr15:28632748 3'AG 28632748 Downstream 74bp 6588 chr12 110581194 110581194 1 + G T UCEC 110581194 + 110581174 110581214 41 TTTATTTTTAAAGGTTTAATGAAGAGGCTAGAGGAGGAGAT TTTATTTTTAAAGGTTTAATTAAGAGGCTAGAGGAGGAGAT Direct Loss 0.933138460934456 0 NA NA prediction 0.866276921868911 Functional Loss - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110581194 chr12:110581194 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6812 0 0 0 0 1 IFT81 chr12:110581187 3'AG 110581187 Downstream 8bp 6589 chr14 97299833 97299833 1 + G A BRCA 97299833 + 97299813 97299853 41 CTCGTGTAAAAGCAGCTCAAGCTGGAAGACAGAGCTCTGCA CTCGTGTAAAAGCAGCTCAAACTGGAAGACAGAGCTCTGCA Direct Loss 0.933133415605139 0 NA NA prediction 0.866266831210279 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97299833 chr14:97299833 nonsynonymous SNV 0.960 1 21 hm7G_associated_SNPs_6813 0 0 1 0 1 VRK1 chr14:97299804 3'AG 97299804 Downstream 30bp 6590 chr16 67290894 67290894 1 + G T SARC 67290894 + 67290874 67290914 41 ACCAAGTGGTGATGTCCTATGGGGGCCTGCGGGGGGCTGTG ACCAAGTGGTGATGTCCTATTGGGGCCTGCGGGGGGCTGTG Direct Loss 0.933120756346472 0 NA NA prediction 0.866241512692944 Functional Loss - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67290894 chr16:67290894 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6815 0 0 0 0 1 SLC9A5 chr16:67290814 3'AG 67290814 Downstream 81bp 6591 chrX 154280053 154280053 1 + G C LUSC 154280053 + 154280033 154280073 41 AGAGCAATCAGATACCTACTGAGGTCAGGAGCAAAGCTGAG AGAGCAATCAGATACCTACTCAGGTCAGGAGCAAAGCTGAG Direct Loss 0.933103003572 0 NA NA prediction 0.866206007144001 Functional Loss - FUNDC2 ENSG00000165775 CDS Human protein_coding chrX:154280053 chrX:154280053 nonsynonymous SNV 0.982 1 21 hm7G_associated_SNPs_6819 0 0 1 0 1 FUNDC2 chrX:154280076 5'GT 154280076 Upstream 24bp 6592 chr11 50378142 50378142 1 + G A rs142291793 50378142 + 50378122 50378162 41 AGAAGAAGAAGGATAAGGATGATGATGGTGGTGAGGATGAT AGAAGAAGAAGGATAAGGATAATGATGGTGGTGAGGATGAT Direct Loss 0.93309887432228 0 NA NA prediction 0.86619774864456 Functional Loss - LOC646813 ENSG00000214883 ncRNA_exonic Human unprocessed_pseudogene chr11:50378142 chr11:50378142 . . 0 21 hm7G_associated_SNPs_6821 0 0 0 1 1 LOC646813 chr11:50378065 3'AG 50378065 Downstream 78bp 6593 chr9 140083606 140083606 1 + G A LUSC 140083606 + 140083586 140083626 41 CAGCGGCTGCAGAATGAGGTGAGGCAGCTGACAGAGAAGCT CAGCGGCTGCAGAATGAGGTAAGGCAGCTGACAGAGAAGCT Direct Loss 0.933089463003888 0 NA NA prediction 0.866178926007777 Functional Loss - SSNA1 ENSG00000176101 CDS Human protein_coding chr9:140083606 chr9:140083606 synonymous SNV . 0 21 hm7G_associated_SNPs_6822 0 0 1 0 1 SSNA1 chr9:140083518 3'AG 140083518 Downstream 89bp 6594 chr8 42229165 42229165 1 + G A COAD 42229165 + 42229145 42229185 41 ATACCGGGAACCCAAGGACCGGAGCGAATGAGGCCTGTATC ATACCGGGAACCCAAGGACCAGAGCGAATGAGGCCTGTATC Direct Loss 0.933084930486332 0 NA NA prediction 0.866169860972664 Functional Loss - POLB ENSG00000070501 CDS Human protein_coding chr8:42229165 chr8:42229165 nonsynonymous SNV 0.581 4 21 hm7G_associated_SNPs_6823 0 0 1 0 1 POLB chr8:42229081 3'AG 42229081 Downstream 85bp 6595 chr7 39730015 39730015 1 + G T SARC 39730015 + 39729995 39730035 41 TGAGCCTACCAAAGCAGACAGCTATCGGAAGAAGGTAGTGC TGAGCCTACCAAAGCAGACATCTATCGGAAGAAGGTAGTGC Direct Loss 0.933078125256545 0 NA NA prediction 0.86615625051309 Functional Loss - RALA ENSG00000006451 CDS Human protein_coding chr7:39730015 chr7:39730015 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6824 0 0 1 0 1 RALA chr7:39729981 3'AG 39729981 Downstream 35bp 6596 chr11 60197205 60197205 1 + G T SARC 60197205 + 60197185 60197225 41 TATTTCCTCCAGAAATCACTGCTTCAGAATATGAGTCCACA TATTTCCTCCAGAAATCACTTCTTCAGAATATGAGTCCACA Direct Loss 0.933073103217397 0 NA NA prediction 0.866146206434794 Functional Loss - MS4A5 ENSG00000166930 CDS Human protein_coding chr11:60197205 chr11:60197205 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_6825 0 0 0 0 1 MS4A5 chr11:60197300 5'GT 60197300 Upstream 96bp 6597 chr12 13211414 13211414 1 + G A ESCA 13211414 + 13211394 13211434 41 TGTCTCCATTGGAATTGGCTGATGTGAATGGAGATGGCCTG TGTCTCCATTGGAATTGGCTAATGTGAATGGAGATGGCCTG Direct Loss 0.933070156307673 0 NA NA prediction 0.866140312615346 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13211414 chr12:13211414 nonsynonymous SNV 0.978 4 21 hm7G_associated_SNPs_6826 0 0 1 1 2 FAM234B chr12:13211385 3'AG 13211385 Downstream 30bp 6598 chr12 13211414 13211414 1 + G A ESCA 13211414 + 13211394 13211434 41 TGTCTCCATTGGAATTGGCTGATGTGAATGGAGATGGCCTG TGTCTCCATTGGAATTGGCTAATGTGAATGGAGATGGCCTG Direct Loss 0.933070156307673 0 NA NA prediction 0.866140312615346 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13211414 chr12:13211414 nonsynonymous SNV 0.978 4 21 hm7G_associated_SNPs_6826 0 0 1 1 2 FAM234B chr12:13211483 5'GT 13211483 Upstream 70bp 6599 chrX 130222655 130222655 1 + G A SKCM 130222655 + 130222635 130222675 41 CTGCCCGTTCCCATGACGATGAGGAAGGAGCGGGTAACCCT CTGCCCGTTCCCATGACGATAAGGAAGGAGCGGGTAACCCT Direct Loss 0.933070147204088 0 NA NA prediction 0.866140294408177 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130222655 chrX:130222655 nonsynonymous SNV 0.902 1 21 hm7G_associated_SNPs_6827 0 0 0 0 1 ARHGAP36 chrX:130222602 3'AG 130222602 Downstream 54bp 6600 chr11 63764101 63764101 1 + G A HNSC 63764101 + 63764081 63764121 41 ACTTGGAGGCACTGCTGGATGACAGCAAGGAGTTGCAGCGG ACTTGGAGGCACTGCTGGATAACAGCAAGGAGTTGCAGCGG Direct Loss 0.933066257830673 0 NA NA prediction 0.866132515661346 Functional Loss - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764101 chr11:63764101 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6828 0 0 1 0 2 OTUB1 chr11:63764002 3'AG 63764002 Downstream 100bp 6601 chr11 63764101 63764101 1 + G A HNSC 63764101 + 63764081 63764121 41 ACTTGGAGGCACTGCTGGATGACAGCAAGGAGTTGCAGCGG ACTTGGAGGCACTGCTGGATAACAGCAAGGAGTTGCAGCGG Direct Loss 0.933066257830673 0 NA NA prediction 0.866132515661346 Functional Loss - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764101 chr11:63764101 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6828 0 0 1 0 2 OTUB1 chr11:63764120 5'GT 63764120 Upstream 20bp 6602 chr15 44085917 44085917 1 + G T UCEC 44085917 + 44085897 44085937 41 TCTACCCCCAGGGACTCGGAGATCATGCAGCAGAAGCAGAA TCTACCCCCAGGGACTCGGATATCATGCAGCAGAAGCAGAA Direct Loss 0.933063645990698 0 NA NA prediction 0.866127291981395 Functional Loss - SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085917 chr15:44085917 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6829 0 0 1 0 2 SERF2 chr15:44085885 3'AG 44085885 Downstream 33bp 6603 chr15 44085917 44085917 1 + G T UCEC 44085917 + 44085897 44085937 41 TCTACCCCCAGGGACTCGGAGATCATGCAGCAGAAGCAGAA TCTACCCCCAGGGACTCGGATATCATGCAGCAGAAGCAGAA Direct Loss 0.933063645990698 0 NA NA prediction 0.866127291981395 Functional Loss - SERF2 ENSG00000140264 CDS Human protein_coding chr15:44085917 chr15:44085917 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6829 0 0 1 0 2 SERF2 chr15:44085908 3'AG 44085908 Downstream 10bp 6604 chr12 75785031 75785031 1 + G A COAD 75785031 + 75785011 75785051 41 AGTTTGAACGCCAGATTTTTGCCAGACGAGGAGGACGTAGA AGTTTGAACGCCAGATTTTTACCAGACGAGGAGGACGTAGA Direct Loss 0.93306356352464 0 NA NA prediction 0.86612712704928 Functional Loss - GLIPR1L2 ENSG00000180481 CDS Human protein_coding chr12:75785031 chr12:75785031 synonymous SNV . 0 21 hm7G_associated_SNPs_6830 0 0 0 0 1 GLIPR1L2 chr12:75785130 5'GT 75785130 Upstream 100bp 6605 chr20 1234974 1234974 1 + G A BRCA 1234974 + 1234954 1234994 41 GCTCTGTAGAAATAGTGACCGAAAACAAGCAGCTGCCAAAT GCTCTGTAGAAATAGTGACCAAAAACAAGCAGCTGCCAAAT Direct Loss 0.933060037111896 0 NA NA prediction 0.866120074223791 Functional Loss - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1234974 chr20:1234974 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_6831 0 0 0 0 1 RAD21L1 chr20:1234913 3'AG 1234913 Downstream 62bp 6606 chr1 26497108 26497108 1 + G A UCEC 26497108 + 26497088 26497128 41 CCCTACAGTCAGGAAGAGGCGGAGAGGGCAGCGGGTATGGG CCCTACAGTCAGGAAGAGGCAGAGAGGGCAGCGGGTATGGG Direct Loss 0.93305907175062 0 NA NA prediction 0.86611814350124 Functional Loss - ZNF593 ENSG00000142684 CDS Human protein_coding chr1:26497108 chr1:26497108 nonsynonymous SNV 0.931 0 21 hm7G_associated_SNPs_6832 0 0 1 0 1 ZNF593 chr1:26497066 3'AG 26497066 Downstream 43bp 6607 chr19 11474850 11474850 1 + G A PRAD 11474850 + 11474830 11474870 41 GTCTCAGGAACCCGAGGTCTGCAGGCCGCATTCGACACCGG GTCTCAGGAACCCGAGGTCTACAGGCCGCATTCGACACCGG Direct Loss 0.933049662159403 0 NA NA prediction 0.866099324318805 Functional Loss - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474850 chr19:11474850 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6834 0 0 1 0 2 PLPPR2 chr19:11474837 3'AG 11474837 Downstream 14bp 6608 chr19 11474850 11474850 1 + G A PRAD 11474850 + 11474830 11474870 41 GTCTCAGGAACCCGAGGTCTGCAGGCCGCATTCGACACCGG GTCTCAGGAACCCGAGGTCTACAGGCCGCATTCGACACCGG Direct Loss 0.933049662159403 0 NA NA prediction 0.866099324318805 Functional Loss - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474850 chr19:11474850 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6834 0 0 1 0 2 PLPPR2 chr19:11474888 5'GT 11474888 Upstream 39bp 6609 chr11 85610045 85610045 1 + G A GBM 85610045 + 85610025 85610065 41 AGAGATCTGGGAGAATGACTGGCTCAAAAAAGAGGTAAGTG AGAGATCTGGGAGAATGACTAGCTCAAAAAAGAGGTAAGTG Direct Loss 0.933046897966044 0 NA NA prediction 0.866093795932088 Functional Loss - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85610045 chr11:85610045 stopgain 1.000 1 21 hm7G_associated_SNPs_6835 0 0 0 0 2 CCDC83 chr11:85609990 3'AG 85609990 Downstream 56bp 6610 chr11 85610045 85610045 1 + G A GBM 85610045 + 85610025 85610065 41 AGAGATCTGGGAGAATGACTGGCTCAAAAAAGAGGTAAGTG AGAGATCTGGGAGAATGACTAGCTCAAAAAAGAGGTAAGTG Direct Loss 0.933046897966044 0 NA NA prediction 0.866093795932088 Functional Loss - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85610045 chr11:85610045 stopgain 1.000 1 21 hm7G_associated_SNPs_6835 0 0 0 0 2 CCDC83 chr11:85610058 5'GT 85610058 Upstream 14bp 6611 chr1 203696634 203696634 1 + G A STAD 203696634 + 203696614 203696654 41 GACTGGATGAGATTGACCATGCTGAGATGGAGCTGCGCCGA GACTGGATGAGATTGACCATACTGAGATGGAGCTGCGCCGA Direct Loss 0.933036924570126 0 NA NA prediction 0.866073849140252 Functional Loss - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203696634 chr1:203696634 nonsynonymous SNV 0.855 2 21 hm7G_associated_SNPs_6837 0 0 1 0 1 ATP2B4 chr1:203696699 5'GT 203696699 Upstream 66bp 6612 chr7 7646672 7646672 1 + G A LGG 7646672 + 7646652 7646692 41 GCATGCACGTGTAAATGTATGCAGTTGGATACAACAGGGAA GCATGCACGTGTAAATGTATACAGTTGGATACAACAGGGAA Direct Loss 0.933032352843659 0 NA NA prediction 0.866064705687318 Functional Loss - MIOS ENSG00000164654 CDS Human protein_coding chr7:7646672 chr7:7646672 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6838 0 0 0 0 1 MIOS chr7:7646627 3'AG 7646627 Downstream 46bp 6613 chr21 37781744 37781744 1 + G T HNSC 37781744 + 37781724 37781764 41 TGTCCGGTCTACTTTGAACTGAGGCCAGTGGTGGAAACAGG TGTCCGGTCTACTTTGAACTTAGGCCAGTGGTGGAAACAGG Direct Loss 0.933024448383811 0 NA NA prediction 0.866048896767622 Functional Loss - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37781744 chr21:37781744 synonymous SNV . 0 21 hm7G_associated_SNPs_6839 0 0 1 0 2 CHAF1B chr21:37781672 3'AG 37781672 Downstream 73bp 6614 chr21 37781744 37781744 1 + G T HNSC 37781744 + 37781724 37781764 41 TGTCCGGTCTACTTTGAACTGAGGCCAGTGGTGGAAACAGG TGTCCGGTCTACTTTGAACTTAGGCCAGTGGTGGAAACAGG Direct Loss 0.933024448383811 0 NA NA prediction 0.866048896767622 Functional Loss - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37781744 chr21:37781744 synonymous SNV . 0 21 hm7G_associated_SNPs_6839 0 0 1 0 2 CHAF1B chr21:37781763 5'GT 37781763 Upstream 20bp 6615 chr10 26800723 26800723 1 + G T STAD 26800723 + 26800703 26800743 41 AACAGCACAAAGTCACTGATGGTGGATGAGCGGCAGCTGGC AACAGCACAAAGTCACTGATTGTGGATGAGCGGCAGCTGGC Direct Loss 0.933023590366259 0 NA NA prediction 0.866047180732518 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26800723 chr10:26800723 nonsynonymous SNV 0.991 2 21 hm7G_associated_SNPs_6840 0 0 0 0 1 APBB1IP chr10:26800676 3'AG 26800676 Downstream 48bp 6616 chrX 16773165 16773165 1 + G A UCEC 16773165 + 16773145 16773185 41 TGGCTGCCCAACAGCAGGCCGCAGGGAAGGAGGAGAAGAGC TGGCTGCCCAACAGCAGGCCACAGGGAAGGAGGAGAAGAGC Direct Loss 0.933021610550666 0 NA NA prediction 0.866043221101333 Functional Loss - SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16773165 chrX:16773165 nonsynonymous SNV 0.124 0 21 hm7G_associated_SNPs_6841 0 0 0 0 1 SYAP1 chrX:16773216 5'GT 16773216 Upstream 52bp 6617 chr7 143002066 143002066 1 + G T PAAD 143002066 + 143002046 143002086 41 TCAAGGATCGGGAAGGTTATGCTCCTGGCACAGAATTCCAC TCAAGGATCGGGAAGGTTATTCTCCTGGCACAGAATTCCAC Direct Loss 0.932999545820362 0 NA NA prediction 0.865999091640724 Functional Loss - CASP2 ENSG00000106144 CDS Human protein_coding chr7:143002066 chr7:143002066 nonsynonymous SNV 0.986 2 21 hm7G_associated_SNPs_6844 0 0 1 0 1 CASP2 chr7:143002033 3'AG 143002033 Downstream 34bp 6618 chr14 23793474 23793474 1 + G A LUSC 23793474 + 23793454 23793494 41 ATTCTACAGTGGTTTTAACAGCAGGCCCCGGGGTCGCGTCT ATTCTACAGTGGTTTTAACAACAGGCCCCGGGGTCGCGTCT Direct Loss 0.932997422418367 0 NA NA prediction 0.865994844836734 Functional Loss - BCL2L2-PABPN1;PABPN1 ENSG00000100836;ENSG00000258643 CDS Human other chr14:23793474 chr14:23793474 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6845 0 0 1 0 1 BCL2L2-PABPN1;PABPN1 chr14:23793498 5'GT 23793498 Upstream 25bp 6619 chr3 197483385 197483385 1 + G A COAD 197483385 + 197483365 197483405 41 CTCCAGCAAAGTGGTGCCCAGCAATTCAGGATGAGAGTGCG CTCCAGCAAAGTGGTGCCCAACAATTCAGGATGAGAGTGCG Direct Loss 0.93298212688427 0 NA NA prediction 0.865964253768541 Functional Loss - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197483385 chr3:197483385 synonymous SNV . 0 21 hm7G_associated_SNPs_6846 0 0 1 0 2 FYTTD1 chr3:197483297 3'AG 197483297 Downstream 89bp 6620 chr3 197483385 197483385 1 + G A COAD 197483385 + 197483365 197483405 41 CTCCAGCAAAGTGGTGCCCAGCAATTCAGGATGAGAGTGCG CTCCAGCAAAGTGGTGCCCAACAATTCAGGATGAGAGTGCG Direct Loss 0.93298212688427 0 NA NA prediction 0.865964253768541 Functional Loss - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197483385 chr3:197483385 synonymous SNV . 0 21 hm7G_associated_SNPs_6846 0 0 1 0 2 FYTTD1 chr3:197483428 5'GT 197483428 Upstream 44bp 6621 chr2 86705776 86705776 1 + G T SARC 86705776 + 86705756 86705796 41 TCATTCTGTAAGAGCGAAATGGGGAATAAAGGCAAACTGCC TCATTCTGTAAGAGCGAAATTGGGAATAAAGGCAAACTGCC Direct Loss 0.932970962455835 0 NA NA prediction 0.86594192491167 Functional Loss - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86705776 chr2:86705776 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6849 0 0 1 0 2 KDM3A chr2:86705731 3'AG 86705731 Downstream 46bp 6622 chr2 86705776 86705776 1 + G T SARC 86705776 + 86705756 86705796 41 TCATTCTGTAAGAGCGAAATGGGGAATAAAGGCAAACTGCC TCATTCTGTAAGAGCGAAATTGGGAATAAAGGCAAACTGCC Direct Loss 0.932970962455835 0 NA NA prediction 0.86594192491167 Functional Loss - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86705776 chr2:86705776 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6849 0 0 1 0 2 KDM3A chr2:86705858 5'GT 86705858 Upstream 83bp 6623 chr14 24707474 24707474 1 + G A HNSC 24707474 + 24707454 24707494 41 GCAGGAGCTGACTTCGTGATGCTGGGTGGCATGCTGGCTGG GCAGGAGCTGACTTCGTGATACTGGGTGGCATGCTGGCTGG Direct Loss 0.932962408370982 0 NA NA prediction 0.865924816741965 Functional Loss - GMPR2 ENSG00000100938 CDS Human protein_coding chr14:24707474 chr14:24707474 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_6850 0 0 1 0 1 GMPR2 chr14:24707452 3'AG 24707452 Downstream 23bp 6624 chr10 124266322 124266322 1 + G T HNSC 124266322 + 124266302 124266342 41 AGTCACCACCGGGATCGTGAGCACCACCCAGCGAGGCGGCA AGTCACCACCGGGATCGTGATCACCACCCAGCGAGGCGGCA Direct Loss 0.932961339060413 0 NA NA prediction 0.865922678120827 Functional Loss - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124266322 chr10:124266322 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_6851 0 0 0 0 1 HTRA1 chr10:124266401 5'GT 124266401 Upstream 80bp 6625 chr20 55206743 55206743 1 + G A COAD 55206743 + 55206723 55206763 41 CCTCACCAGATGGACGAGGTGCAGGTGAGCGGCGCTGCGGC CCTCACCAGATGGACGAGGTACAGGTGAGCGGCGCTGCGGC Direct Loss 0.932950244141451 0 NA NA prediction 0.865900488282901 Functional Loss - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55206743 chr20:55206743 synonymous SNV . 0 21 hm7G_associated_SNPs_6854 0 0 0 0 1 TFAP2C chr20:55206746 5'GT 55206746 Upstream 4bp 6626 chr11 117063553 117063553 1 + G A GBM 117063553 + 117063533 117063573 41 CAGGACCGCATGGTGCTGCTGGTCATGGGCAACGTCATCAA CAGGACCGCATGGTGCTGCTAGTCATGGGCAACGTCATCAA Direct Loss 0.932948763272009 0 NA NA prediction 0.865897526544017 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117063553 chr11:117063553 synonymous SNV . 0 21 hm7G_associated_SNPs_6855 0 0 1 0 2 SIDT2 chr11:117063536 3'AG 117063536 Downstream 18bp 6627 chr11 117063553 117063553 1 + G A GBM 117063553 + 117063533 117063573 41 CAGGACCGCATGGTGCTGCTGGTCATGGGCAACGTCATCAA CAGGACCGCATGGTGCTGCTAGTCATGGGCAACGTCATCAA Direct Loss 0.932948763272009 0 NA NA prediction 0.865897526544017 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117063553 chr11:117063553 synonymous SNV . 0 21 hm7G_associated_SNPs_6855 0 0 1 0 2 SIDT2 chr11:117063582 5'GT 117063582 Upstream 30bp 6628 chr18 672950 672950 1 + G A BLCA 672950 + 672930 672970 41 AAGCTGAAGACTTTCAGATTGAAGGGTACAATCCGCATCCA AAGCTGAAGACTTTCAGATTAAAGGGTACAATCCGCATCCA Direct Loss 0.932946767177741 0 NA NA prediction 0.865893534355482 Functional Loss - TYMS ENSG00000176890 CDS Human protein_coding chr18:672950 chr18:672950 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_6856 0 0 1 0 1 TYMS chr18:672860 3'AG 672860 Downstream 91bp 6629 chr11 34489873 34489873 1 + G C BLCA 34489873 + 34489853 34489893 41 AACGTGCTGAATGAGGAACAGAGGAAACGTCTGTGTGAGAA AACGTGCTGAATGAGGAACACAGGAAACGTCTGTGTGAGAA Direct Loss 0.932946086448966 0 NA NA prediction 0.865892172897932 Functional Loss - CAT ENSG00000121691 CDS Human protein_coding chr11:34489873 chr11:34489873 nonsynonymous SNV 0.215 2 21 hm7G_associated_SNPs_6857 0 0 1 0 2 CAT chr11:34489835 3'AG 34489835 Downstream 39bp 6630 chr11 34489873 34489873 1 + G C BLCA 34489873 + 34489853 34489893 41 AACGTGCTGAATGAGGAACAGAGGAAACGTCTGTGTGAGAA AACGTGCTGAATGAGGAACACAGGAAACGTCTGTGTGAGAA Direct Loss 0.932946086448966 0 NA NA prediction 0.865892172897932 Functional Loss - CAT ENSG00000121691 CDS Human protein_coding chr11:34489873 chr11:34489873 nonsynonymous SNV 0.215 2 21 hm7G_associated_SNPs_6857 0 0 1 0 2 CAT chr11:34489942 5'GT 34489942 Upstream 70bp 6631 chr2 242402854 242402854 1 + G C UCEC 242402854 + 242402834 242402874 41 GAGTTCCACAGAGGCTTCCTGCGCGAGGTGGAGCAGAGGCT GAGTTCCACAGAGGCTTCCTCCGCGAGGTGGAGCAGAGGCT Direct Loss 0.932942419693753 0 NA NA prediction 0.865884839387507 Functional Loss - FARP2 ENSG00000006607 CDS Human protein_coding chr2:242402854 chr2:242402854 synonymous SNV . 0 21 hm7G_associated_SNPs_6859 0 0 1 0 1 FARP2 chr2:242402883 5'GT 242402883 Upstream 30bp 6632 chr12 75884283 75884283 1 + G C ESCA 75884283 + 75884263 75884303 41 CAATGGAGCACATTTTATATGCAACTACGGACCAGGGTAAG CAATGGAGCACATTTTATATCCAACTACGGACCAGGGTAAG Direct Loss 0.932934883158264 0 NA NA prediction 0.865869766316527 Functional Loss - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75884283 chr12:75884283 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6860 0 0 0 0 1 GLIPR1 chr12:75884186 3'AG 75884186 Downstream 98bp 6633 chr19 13080705 13080705 1 + G T COAD 13080705 + 13080685 13080725 41 CAGCTGGGGATGGGCAGGCTGCAGCGTGGGCAAGACGAGGT CAGCTGGGGATGGGCAGGCTTCAGCGTGGGCAAGACGAGGT Direct Loss 0.932925568782544 0 NA NA prediction 0.865851137565087 Functional Loss - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13080705 chr19:13080705 synonymous SNV . 0 21 hm7G_associated_SNPs_6861 0 0 0 0 1 DAND5 chr19:13080798 5'GT 13080798 Upstream 94bp 6634 chr2 233398998 233398998 1 + G T STAD 233398998 + 233398978 233399018 41 AATGAGCTGAAGCCAGCTGTGGATGGGGCAAACTTCATTGT AATGAGCTGAAGCCAGCTGTTGATGGGGCAAACTTCATTGT Direct Loss 0.932920630897329 0 NA NA prediction 0.865841261794658 Functional Loss - CHRND ENSG00000135902 CDS Human protein_coding chr2:233398998 chr2:233398998 synonymous SNV . 0 21 hm7G_associated_SNPs_6863 0 0 0 0 2 CHRND chr2:233398934 3'AG 233398934 Downstream 65bp 6635 chr2 233398998 233398998 1 + G T STAD 233398998 + 233398978 233399018 41 AATGAGCTGAAGCCAGCTGTGGATGGGGCAAACTTCATTGT AATGAGCTGAAGCCAGCTGTTGATGGGGCAAACTTCATTGT Direct Loss 0.932920630897329 0 NA NA prediction 0.865841261794658 Functional Loss - CHRND ENSG00000135902 CDS Human protein_coding chr2:233398998 chr2:233398998 synonymous SNV . 0 21 hm7G_associated_SNPs_6863 0 0 0 0 2 CHRND chr2:233399052 5'GT 233399052 Upstream 55bp 6636 chr5 40936502 40936502 1 + G T LUAD 40936502 + 40936482 40936522 41 ACTGTGATGAAGACAGTGCTGATGAAGACAGATGTGAGGAC ACTGTGATGAAGACAGTGCTTATGAAGACAGATGTGAGGAC Direct Loss 0.932913210231154 0 NA NA prediction 0.865826420462308 Functional Loss - C7 ENSG00000112936 CDS Human protein_coding chr5:40936502 chr5:40936502 nonsynonymous SNV 0.994 5 21 hm7G_associated_SNPs_6865 0 0 0 0 2 C7 chr5:40936440 3'AG 40936440 Downstream 63bp 6637 chr5 40936502 40936502 1 + G T LUAD 40936502 + 40936482 40936522 41 ACTGTGATGAAGACAGTGCTGATGAAGACAGATGTGAGGAC ACTGTGATGAAGACAGTGCTTATGAAGACAGATGTGAGGAC Direct Loss 0.932913210231154 0 NA NA prediction 0.865826420462308 Functional Loss - C7 ENSG00000112936 CDS Human protein_coding chr5:40936502 chr5:40936502 nonsynonymous SNV 0.994 5 21 hm7G_associated_SNPs_6865 0 0 0 0 2 C7 chr5:40936587 5'GT 40936587 Upstream 86bp 6638 chr10 115489088 115489088 1 + G A COAD 115489088 + 115489068 115489108 41 AGGCTATTACTCGTGGAGGAGCCCAGGAAGAGGCTCCTGGT AGGCTATTACTCGTGGAGGAACCCAGGAAGAGGCTCCTGGT Direct Loss 0.932912936362085 0 NA NA prediction 0.86582587272417 Functional Loss - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489088 chr10:115489088 nonsynonymous SNV 0.992 0 21 hm7G_associated_SNPs_6866 0 0 0 0 1 CASP7 chr10:115489070 3'AG 115489070 Downstream 19bp 6639 chr12 7476890 7476890 1 + G T LUSC 7476890 + 7476870 7476910 41 ACAATCCACAGAAAACTGCTGCCACGATAAGAGGAGATTTT ACAATCCACAGAAAACTGCTTCCACGATAAGAGGAGATTTT Direct Loss 0.932899818897388 0 NA NA prediction 0.865799637794776 Functional Loss - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7476890 chr12:7476890 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_6869 0 0 0 0 1 ACSM4 chr12:7476869 3'AG 7476869 Downstream 22bp 6640 chr16 20787220 20787220 1 + G T SARC 20787220 + 20787200 20787240 41 AACAGAAATGGAGAAGAGATGCGATGGAGTTTTGAGGAACT AACAGAAATGGAGAAGAGATTCGATGGAGTTTTGAGGAACT Direct Loss 0.932892522311845 0 NA NA prediction 0.86578504462369 Functional Loss - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20787220 chr16:20787220 nonsynonymous SNV 0.912 0 21 hm7G_associated_SNPs_6871 0 0 1 0 1 ACSM3 chr16:20787161 3'AG 20787161 Downstream 60bp 6641 chr1 160147438 160147438 1 + G T SARC 160147438 + 160147418 160147458 41 CTTGAATGACCTGGAGGACAGCTACGGACAGCAGTGGGTGA CTTGAATGACCTGGAGGACATCTACGGACAGCAGTGGGTGA Direct Loss 0.932879434873733 0 NA NA prediction 0.865758869747466 Functional Loss - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160147438 chr1:160147438 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_6873 0 0 0 0 1 ATP1A4 chr1:160147454 5'GT 160147454 Upstream 17bp 6642 chr13 53240953 53240953 1 + G T CHOL 53240953 + 53240933 53240973 41 TTTGTGTTCATTAGTTGTCTGCTTTGGTTAAACTTCCTTCT TTTGTGTTCATTAGTTGTCTTCTTTGGTTAAACTTCCTTCT Direct Loss 0.932877746821476 0 NA NA prediction 0.865755493642953 Functional Loss - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53240953 chr13:53240953 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6874 0 0 1 1 1 SUGT1 chr13:53240947 3'AG 53240947 Downstream 7bp 6643 chr11 27147298 27147298 1 + G T KIRC 27147298 + 27147278 27147318 41 AAAGAGTTCAGCCTTTTTATGCTGCTCTGAAGGAGTTTGTT AAAGAGTTCAGCCTTTTTATTCTGCTCTGAAGGAGTTTGTT Direct Loss 0.932872190182884 0 NA NA prediction 0.865744380365769 Functional Loss - BBOX1 ENSG00000129151 CDS Human protein_coding chr11:27147298 chr11:27147298 nonsynonymous SNV 0.990 2 21 hm7G_associated_SNPs_6875 0 0 0 0 2 BBOX1 chr11:27147201 3'AG 27147201 Downstream 98bp 6644 chr11 27147298 27147298 1 + G T KIRC 27147298 + 27147278 27147318 41 AAAGAGTTCAGCCTTTTTATGCTGCTCTGAAGGAGTTTGTT AAAGAGTTCAGCCTTTTTATTCTGCTCTGAAGGAGTTTGTT Direct Loss 0.932872190182884 0 NA NA prediction 0.865744380365769 Functional Loss - BBOX1 ENSG00000129151 CDS Human protein_coding chr11:27147298 chr11:27147298 nonsynonymous SNV 0.990 2 21 hm7G_associated_SNPs_6875 0 0 0 0 2 BBOX1 chr11:27147367 5'GT 27147367 Upstream 70bp 6645 chr13 113814419 113814419 1 + G A SKCM 113814419 + 113814399 113814439 41 GAACTCTTCGAGGGAAACTTGGAAAAAGAATGTTATGAAGA GAACTCTTCGAGGGAAACTTAGAAAAAGAATGTTATGAAGA Direct Loss 0.932858345394708 0 NA NA prediction 0.865716690789416 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113814419 chr13:113814419 synonymous SNV . 0 21 hm7G_associated_SNPs_6877 0 0 1 0 2 PROZ chr13:113814328 3'AG 113814328 Downstream 92bp 6646 chr13 113814419 113814419 1 + G A SKCM 113814419 + 113814399 113814439 41 GAACTCTTCGAGGGAAACTTGGAAAAAGAATGTTATGAAGA GAACTCTTCGAGGGAAACTTAGAAAAAGAATGTTATGAAGA Direct Loss 0.932858345394708 0 NA NA prediction 0.865716690789416 Functional Loss - PROZ ENSG00000126231 CDS Human protein_coding chr13:113814419 chr13:113814419 synonymous SNV . 0 21 hm7G_associated_SNPs_6877 0 0 1 0 2 PROZ chr13:113814491 5'GT 113814491 Upstream 73bp 6647 chr9 115167969 115167969 1 + G C BRCA 115167969 + 115167949 115167989 41 GAGATGAACAGCAGATCAGTGCTGCAGTGGAGAAAGCCATC GAGATGAACAGCAGATCAGTCCTGCAGTGGAGAAAGCCATC Direct Loss 0.932847753430905 0 NA NA prediction 0.86569550686181 Functional Loss - HSDL2 ENSG00000119471 CDS Human protein_coding chr9:115167969 chr9:115167969 nonsynonymous SNV 0.706 1 21 hm7G_associated_SNPs_6878 0 0 1 0 2 HSDL2 chr9:115167904 3'AG 115167904 Downstream 66bp 6648 chr9 115167969 115167969 1 + G C BRCA 115167969 + 115167949 115167989 41 GAGATGAACAGCAGATCAGTGCTGCAGTGGAGAAAGCCATC GAGATGAACAGCAGATCAGTCCTGCAGTGGAGAAAGCCATC Direct Loss 0.932847753430905 0 NA NA prediction 0.86569550686181 Functional Loss - HSDL2 ENSG00000119471 CDS Human protein_coding chr9:115167969 chr9:115167969 nonsynonymous SNV 0.706 1 21 hm7G_associated_SNPs_6878 0 0 1 0 2 HSDL2 chr9:115168002 5'GT 115168002 Upstream 34bp 6649 chr1 173725119 173725119 1 + G T STAD 173725119 + 173725099 173725139 41 CCGCAAGAACGACCACTAATGCAAGGACCAAGGACGAGACC CCGCAAGAACGACCACTAATTCAAGGACCAAGGACGAGACC Direct Loss 0.932816300263753 0 NA NA prediction 0.865632600527506 Functional Loss - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173725119 chr1:173725119 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6884 0 0 1 0 2 KLHL20 chr1:173725062 3'AG 173725062 Downstream 58bp 6650 chr1 173725119 173725119 1 + G T STAD 173725119 + 173725099 173725139 41 CCGCAAGAACGACCACTAATGCAAGGACCAAGGACGAGACC CCGCAAGAACGACCACTAATTCAAGGACCAAGGACGAGACC Direct Loss 0.932816300263753 0 NA NA prediction 0.865632600527506 Functional Loss - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173725119 chr1:173725119 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6884 0 0 1 0 2 KLHL20 chr1:173725177 5'GT 173725177 Upstream 59bp 6651 chr8 97311962 97311962 1 + G A STAD 97311962 + 97311942 97311982 41 CCCCAATTTTGCCGAGTGCTGGTGGGATCAAGTCATTCTGG CCCCAATTTTGCCGAGTGCTAGTGGGATCAAGTCATTCTGG Direct Loss 0.932812335712011 0 NA NA prediction 0.865624671424023 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97311962 chr8:97311962 stopgain 1.000 1 21 hm7G_associated_SNPs_6885 0 0 1 0 1 PTDSS1 chr8:97311922 3'AG 97311922 Downstream 41bp 6652 chr1 151373261 151373261 1 + G A UCEC 151373261 + 151373241 151373281 41 TTCCTCGGTTATGTGGACATGCTTGGTGTAGCCTATGAAGC TTCCTCGGTTATGTGGACATACTTGGTGTAGCCTATGAAGC Direct Loss 0.932799328889041 0 NA NA prediction 0.865598657778081 Functional Loss - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151373261 chr1:151373261 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6886 0 0 1 0 2 PSMB4 chr1:151373240 3'AG 151373240 Downstream 22bp 6653 chr1 151373261 151373261 1 + G A UCEC 151373261 + 151373241 151373281 41 TTCCTCGGTTATGTGGACATGCTTGGTGTAGCCTATGAAGC TTCCTCGGTTATGTGGACATACTTGGTGTAGCCTATGAAGC Direct Loss 0.932799328889041 0 NA NA prediction 0.865598657778081 Functional Loss - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151373261 chr1:151373261 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6886 0 0 1 0 2 PSMB4 chr1:151373321 5'GT 151373321 Upstream 61bp 6654 chr17 78023892 78023892 1 + G T UCEC 78023892 + 78023872 78023912 41 ACCAAGCAGAGCCGAGCCCAGCGGCAGGAGCTGGGGGTGAA ACCAAGCAGAGCCGAGCCCATCGGCAGGAGCTGGGGGTGAA Direct Loss 0.932791353355826 0 NA NA prediction 0.865582706711652 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78023892 chr17:78023892 nonsynonymous SNV 0.317 2 21 hm7G_associated_SNPs_6888 0 0 1 0 1 CCDC40 chr17:78023863 3'AG 78023863 Downstream 30bp 6655 chr3 183995159 183995159 1 + G A CESC 183995159 + 183995139 183995179 41 CCAGTTCTCCTGTGGGGGCTGGATTCGGAGGAACCCCCTGC CCAGTTCTCCTGTGGGGGCTAGATTCGGAGGAACCCCCTGC Direct Loss 0.932788355728837 0 NA NA prediction 0.865576711457674 Functional Loss - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183995159 chr3:183995159 stopgain 0.997 1 21 hm7G_associated_SNPs_6889 0 0 0 0 1 ECE2 chr3:183995254 5'GT 183995254 Upstream 96bp 6656 chr12 106890557 106890557 1 + G C LUAD 106890557 + 106890537 106890577 41 AGCTCATTGAGCTGCTGGCTGGCAAGGCCGGTGTGCTGGAC AGCTCATTGAGCTGCTGGCTCGCAAGGCCGGTGTGCTGGAC Direct Loss 0.932784762384384 0 NA NA prediction 0.865569524768767 Functional Loss - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106890557 chr12:106890557 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6890 0 0 0 0 1 POLR3B chr12:106890530 3'AG 106890530 Downstream 28bp 6657 chr1 227071414 227071414 1 + G A UCEC 227071414 + 227071394 227071434 41 GGTTTCCCACAGAGAAGCCAGGAGAACGAGGAGGACGGTGA GGTTTCCCACAGAGAAGCCAAGAGAACGAGGAGGACGGTGA Direct Loss 0.932774361443252 0 NA NA prediction 0.865548722886504 Functional Loss - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227071414 chr1:227071414 synonymous SNV . 0 21 hm7G_associated_SNPs_6892 0 0 0 0 1 PSEN2 chr1:227071406 3'AG 227071406 Downstream 9bp 6658 chr2 27997305 27997305 1 + G C BLCA 27997305 + 27997285 27997325 41 TCTTAGAAACATTCTGGTGAGAATGGTGAGCGAAGCTGGGA TCTTAGAAACATTCTGGTGACAATGGTGAGCGAAGCTGGGA Direct Loss 0.932771002177258 0 NA NA prediction 0.865542004354516 Functional Loss - MRPL33 ENSG00000243147 CDS Human protein_coding chr2:27997305 chr2:27997305 nonsynonymous SNV 0.944 1 21 hm7G_associated_SNPs_6893 0 0 1 0 2 MRPL33 chr2:27997291 3'AG 27997291 Downstream 15bp 6659 chr2 27997305 27997305 1 + G C BLCA 27997305 + 27997285 27997325 41 TCTTAGAAACATTCTGGTGAGAATGGTGAGCGAAGCTGGGA TCTTAGAAACATTCTGGTGACAATGGTGAGCGAAGCTGGGA Direct Loss 0.932771002177258 0 NA NA prediction 0.865542004354516 Functional Loss - MRPL33 ENSG00000243147 CDS Human protein_coding chr2:27997305 chr2:27997305 nonsynonymous SNV 0.944 1 21 hm7G_associated_SNPs_6893 0 0 1 0 2 MRPL33 chr2:27997397 5'GT 27997397 Upstream 93bp 6660 chr11 69462910 69462910 1 + G A rs9344 69462910 + 69462890 69462930 41 AGAGTGATCAAGTGTGACCCGGTAAGTGAGGGTGATGTCCC AGAGTGATCAAGTGTGACCCAGTAAGTGAGGGTGATGTCCC Direct Loss 0.932769407877729 0 NA NA prediction 0.865538815755458 Functional Loss - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69462910 chr11:69462910 synonymous SNV . 0 21 hm7G_associated_SNPs_6894 3 1 1 0 1 CCND1 chr11:69462910 5'GT 69462910 Upstream 1bp 6661 chrX 49137887 49137887 1 + G A STAD 49137887 + 49137867 49137907 41 AGGCCTGCCGAGGAGGAACTGAAGACGAAGAACATGGATGA AGGCCTGCCGAGGAGGAACTAAAGACGAAGAACATGGATGA Direct Loss 0.932769314795055 0 NA NA prediction 0.865538629590111 Functional Loss - PPP1R3F ENSG00000049769 CDS Human protein_coding chrX:49137887 chrX:49137887 synonymous SNV . 0 21 hm7G_associated_SNPs_6895 0 0 1 0 2 PPP1R3F chrX:49137869 3'AG 49137869 Downstream 19bp 6662 chrX 49137887 49137887 1 + G A STAD 49137887 + 49137867 49137907 41 AGGCCTGCCGAGGAGGAACTGAAGACGAAGAACATGGATGA AGGCCTGCCGAGGAGGAACTAAAGACGAAGAACATGGATGA Direct Loss 0.932769314795055 0 NA NA prediction 0.865538629590111 Functional Loss - PPP1R3F ENSG00000049769 CDS Human protein_coding chrX:49137887 chrX:49137887 synonymous SNV . 0 21 hm7G_associated_SNPs_6895 0 0 1 0 2 PPP1R3F chrX:49137924 5'GT 49137924 Upstream 38bp 6663 chr19 15164766 15164766 1 + G T KIRC 15164766 + 15164746 15164786 41 ACATCATACAGGCCTGTCGAGGAGGTGGGGACAGATCCAAG ACATCATACAGGCCTGTCGATGAGGTGGGGACAGATCCAAG Direct Loss 0.932764644946424 0 NA NA prediction 0.865529289892848 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164766 chr19:15164766 stopgain 1.000 1 21 hm7G_associated_SNPs_6896 0 0 0 0 1 CASP14 chr19:15164769 5'GT 15164769 Upstream 4bp 6664 chr19 36365448 36365448 1 + G A BLCA 36365448 + 36365428 36365468 41 CTCTGGAGGAGCAGGTGTCTGGTGAGCGACAGCGCCTGGTG CTCTGGAGGAGCAGGTGTCTAGTGAGCGACAGCGCCTGGTG Direct Loss 0.932759800305354 0 NA NA prediction 0.865519600610708 Functional Loss - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36365448 chr19:36365448 nonsynonymous SNV 0.977 0 21 hm7G_associated_SNPs_6897 0 0 0 0 1 APLP1 chr19:36365406 3'AG 36365406 Downstream 43bp 6665 chr3 184100851 184100851 1 + G A UCEC 184100851 + 184100831 184100871 41 AACCTGACAGTCCAGGAGATGGACTGGCTGGTGCTGGGGGA AACCTGACAGTCCAGGAGATAGACTGGCTGGTGCTGGGGGA Direct Loss 0.932757915077558 0 NA NA prediction 0.865515830155116 Functional Loss - CHRD ENSG00000090539 CDS Human protein_coding chr3:184100851 chr3:184100851 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6898 0 0 1 0 1 CHRD chr3:184100804 3'AG 184100804 Downstream 48bp 6666 chr12 81528618 81528618 1 + G C BLCA 81528618 + 81528598 81528638 41 TCCAAGCTGGCTGGTGTCTTGGTCAAGCATGGCATCAAGAA TCCAAGCTGGCTGGTGTCTTCGTCAAGCATGGCATCAAGAA Direct Loss 0.932756398811768 0 NA NA prediction 0.865512797623537 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81528618 chr12:81528618 nonsynonymous SNV 0.985 1 21 hm7G_associated_SNPs_6899 0 0 1 0 1 ACSS3 chr12:81528595 3'AG 81528595 Downstream 24bp 6667 chr1 110032952 110032952 1 + G A OV 110032952 + 110032932 110032972 41 TATGTGTTTAGCCGCCGGCTGGACCGGTTCTGCTCAGCACT TATGTGTTTAGCCGCCGGCTAGACCGGTTCTGCTCAGCACT Direct Loss 0.932752674110389 0 NA NA prediction 0.865505348220778 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110032952 chr1:110032952 synonymous SNV . 0 21 hm7G_associated_SNPs_6900 0 0 1 0 2 ATXN7L2 chr1:110032893 3'AG 110032893 Downstream 60bp 6668 chr1 110032952 110032952 1 + G A OV 110032952 + 110032932 110032972 41 TATGTGTTTAGCCGCCGGCTGGACCGGTTCTGCTCAGCACT TATGTGTTTAGCCGCCGGCTAGACCGGTTCTGCTCAGCACT Direct Loss 0.932752674110389 0 NA NA prediction 0.865505348220778 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110032952 chr1:110032952 synonymous SNV . 0 21 hm7G_associated_SNPs_6900 0 0 1 0 2 ATXN7L2 chr1:110033014 5'GT 110033014 Upstream 63bp 6669 chr1 171761359 171761359 1 + G A PRAD 171761359 + 171761339 171761379 41 CTGGACTATATCGCCAGCTTGGCAGGAGGAGGAGAAGGTAC CTGGACTATATCGCCAGCTTAGCAGGAGGAGGAGAAGGTAC Direct Loss 0.932748256128414 0 NA NA prediction 0.865496512256829 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761359 chr1:171761359 synonymous SNV . 0 21 hm7G_associated_SNPs_6901 0 0 1 0 1 METTL13 chr1:171761375 5'GT 171761375 Upstream 17bp 6670 chr19 47111569 47111569 1 + G T CESC 47111569 + 47111549 47111589 41 CCCACTGAAGCAGAGCTGCAGGATATGATCAATGAGGTGGA CCCACTGAAGCAGAGCTGCATGATATGATCAATGAGGTGGA Direct Loss 0.932744084563537 0 NA NA prediction 0.865488169127074 Functional Loss - CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111569 chr19:47111569 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6903 0 0 1 0 1 CALM3 chr19:47111597 5'GT 47111597 Upstream 29bp 6671 chr6 143795971 143795971 1 + G T GBM 143795971 + 143795951 143795991 41 CCACTATTAAACTTCTCAATGAAACTAGAGACATGTTGGAA CCACTATTAAACTTCTCAATTAAACTAGAGACATGTTGGAA Direct Loss 0.932735870824142 0 NA NA prediction 0.865471741648283 Functional Loss - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143795971 chr6:143795971 stopgain 1.000 1 21 hm7G_associated_SNPs_6904 0 0 1 0 2 PEX3 chr6:143795923 3'AG 143795923 Downstream 49bp 6672 chr6 143795971 143795971 1 + G T GBM 143795971 + 143795951 143795991 41 CCACTATTAAACTTCTCAATGAAACTAGAGACATGTTGGAA CCACTATTAAACTTCTCAATTAAACTAGAGACATGTTGGAA Direct Loss 0.932735870824142 0 NA NA prediction 0.865471741648283 Functional Loss - PEX3 ENSG00000034693 CDS Human protein_coding chr6:143795971 chr6:143795971 stopgain 1.000 1 21 hm7G_associated_SNPs_6904 0 0 1 0 2 PEX3 chr6:143795993 5'GT 143795993 Upstream 23bp 6673 chr19 9940660 9940660 1 + G A CESC 9940660 + 9940640 9940680 41 GATGAAATCCACGATGGGATGAACCTGGAGCTTTATTATCA GATGAAATCCACGATGGGATAAACCTGGAGCTTTATTATCA Direct Loss 0.932720725351295 0 NA NA prediction 0.865441450702589 Functional Loss - UBL5 ENSG00000198258 CDS Human protein_coding chr19:9940660 chr19:9940660 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6907 0 0 1 0 1 UBL5 chr19:9940641 3'AG 9940641 Downstream 20bp 6674 chr17 53851120 53851120 1 + G C CESC 53851120 + 53851100 53851140 41 CAGCGGCGAGACCTGGACATGGAAGGGAGGAAGATCCATGT CAGCGGCGAGACCTGGACATCGAAGGGAGGAAGATCCATGT Direct Loss 0.932715996825704 0 NA NA prediction 0.865431993651409 Functional Loss - PCTP ENSG00000141179 CDS Human protein_coding chr17:53851120 chr17:53851120 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_6908 0 0 1 0 1 PCTP chr17:53851085 3'AG 53851085 Downstream 36bp 6675 chr13 115067459 115067459 1 + G A UCEC 115067459 + 115067439 115067479 41 TGGGAAGAGCGCAGAGGTGTGACGACAGTCCAGCACCCAGA TGGGAAGAGCGCAGAGGTGTAACGACAGTCCAGCACCCAGA Direct Loss 0.932714408967079 0 NA NA prediction 0.865428817934158 Functional Loss - UPF3A ENSG00000169062 CDS Human protein_coding chr13:115067459 chr13:115067459 nonsynonymous SNV 0.000 1 21 hm7G_associated_SNPs_6909 0 0 1 0 1 UPF3A chr13:115067500 5'GT 115067500 Upstream 42bp 6676 chr3 15676942 15676942 1 + G A LAML 15676942 + 15676922 15676962 41 ACATTCCAGATTTGTGGTCTGCATTATGTCTGGAGCCAGAA ACATTCCAGATTTGTGGTCTACATTATGTCTGGAGCCAGAA Direct Loss 0.932710973912217 0 NA NA prediction 0.865421947824434 Functional Loss - BTD ENSG00000169814 CDS Human protein_coding chr3:15676942 chr3:15676942 nonsynonymous SNV 0.980 1 21 hm7G_associated_SNPs_6910 0 0 0 0 1 BTD chr3:15676931 3'AG 15676931 Downstream 12bp 6677 chr2 172951536 172951536 1 + G A READ 172951536 + 172951516 172951556 41 ACTCAGTACCTAGCTCTGCCGGAGAGGGCGGAGCTCGCGGC ACTCAGTACCTAGCTCTGCCAGAGAGGGCGGAGCTCGCGGC Direct Loss 0.932686018549888 0 NA NA prediction 0.865372037099775 Functional Loss - DLX1 ENSG00000144355 CDS Human protein_coding chr2:172951536 chr2:172951536 synonymous SNV . 0 21 hm7G_associated_SNPs_6911 0 0 1 0 1 DLX1 chr2:172951581 5'GT 172951581 Upstream 46bp 6678 chr1 55277523 55277523 1 + G A SKCM 55277523 + 55277503 55277543 41 GGTAACCCATACACCAAGCTGGAGGAGAATGCCTGGAACCG GGTAACCCATACACCAAGCTAGAGGAGAATGCCTGGAACCG Direct Loss 0.93266824796928 0 NA NA prediction 0.86533649593856 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277523 chr1:55277523 synonymous SNV . 0 21 hm7G_associated_SNPs_6913 0 0 0 0 2 LEXM chr1:55277467 3'AG 55277467 Downstream 57bp 6679 chr1 55277523 55277523 1 + G A SKCM 55277523 + 55277503 55277543 41 GGTAACCCATACACCAAGCTGGAGGAGAATGCCTGGAACCG GGTAACCCATACACCAAGCTAGAGGAGAATGCCTGGAACCG Direct Loss 0.93266824796928 0 NA NA prediction 0.86533649593856 Functional Loss - LEXM ENSG00000162398 CDS Human protein_coding chr1:55277523 chr1:55277523 synonymous SNV . 0 21 hm7G_associated_SNPs_6913 0 0 0 0 2 LEXM chr1:55277604 5'GT 55277604 Upstream 82bp 6680 chr3 127398920 127398920 1 + G T UCEC 127398920 + 127398900 127398940 41 TGCGGCCGCAGCCTGGCTCAGATGCTAGACGAGGACACTGT TGCGGCCGCAGCCTGGCTCATATGCTAGACGAGGACACTGT Direct Loss 0.932665887618109 0 NA NA prediction 0.865331775236219 Functional Loss - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127398920 chr3:127398920 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_6915 0 0 0 0 1 ABTB1 chr3:127398828 3'AG 127398828 Downstream 93bp 6681 chr4 169060698 169060698 1 + G A SKCM 169060698 + 169060678 169060718 41 TGCAATGCACAAAGGATGATGATTGCAGAGGCATACCAGAG TGCAATGCACAAAGGATGATAATTGCAGAGGCATACCAGAG Direct Loss 0.932660661829736 0 NA NA prediction 0.865321323659472 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169060698 chr4:169060698 nonsynonymous SNV 0.030 1 21 hm7G_associated_SNPs_6916 0 0 0 0 2 ANXA10 chr4:169060637 3'AG 169060637 Downstream 62bp 6682 chr4 169060698 169060698 1 + G A SKCM 169060698 + 169060678 169060718 41 TGCAATGCACAAAGGATGATGATTGCAGAGGCATACCAGAG TGCAATGCACAAAGGATGATAATTGCAGAGGCATACCAGAG Direct Loss 0.932660661829736 0 NA NA prediction 0.865321323659472 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169060698 chr4:169060698 nonsynonymous SNV 0.030 1 21 hm7G_associated_SNPs_6916 0 0 0 0 2 ANXA10 chr4:169060731 5'GT 169060731 Upstream 34bp 6683 chr10 72633240 72633240 1 + G A GBM 72633240 + 72633220 72633260 41 CCATCGCAGGCTCACGGCCTGGTGGCATTAGCGCAGCCTGT CCATCGCAGGCTCACGGCCTAGTGGCATTAGCGCAGCCTGT Direct Loss 0.932657958949013 0 NA NA prediction 0.865315917898026 Functional Loss - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72633240 chr10:72633240 nonsynonymous SNV 0.985 4 21 hm7G_associated_SNPs_6918 0 0 1 0 1 SGPL1 chr10:72633282 5'GT 72633282 Upstream 43bp 6684 chr9 37498141 37498141 1 + G A rs112460184 37498141 + 37498121 37498161 41 TTTGCCATCAGATGTGGAGAGCCGAGACCGCCAGGCCCGAT TTTGCCATCAGATGTGGAGAACCGAGACCGCCAGGCCCGAT Direct Loss 0.932653528351228 0 NA NA prediction 0.865307056702455 Functional Loss - POLR1E ENSG00000137054 CDS Human protein_coding chr9:37498141 chr9:37498141 nonsynonymous SNV 0.724 0 21 hm7G_associated_SNPs_6919 0 0 1 0 2 POLR1E chr9:37498088 3'AG 37498088 Downstream 54bp 6685 chr9 37498141 37498141 1 + G A rs112460184 37498141 + 37498121 37498161 41 TTTGCCATCAGATGTGGAGAGCCGAGACCGCCAGGCCCGAT TTTGCCATCAGATGTGGAGAACCGAGACCGCCAGGCCCGAT Direct Loss 0.932653528351228 0 NA NA prediction 0.865307056702455 Functional Loss - POLR1E ENSG00000137054 CDS Human protein_coding chr9:37498141 chr9:37498141 nonsynonymous SNV 0.724 0 21 hm7G_associated_SNPs_6919 0 0 1 0 2 POLR1E chr9:37498221 5'GT 37498221 Upstream 81bp 6686 chr16 57719753 57719753 1 + G A SARC 57719753 + 57719733 57719773 41 CTGCTGGGCCTCTCGAGCCTGGTGGGTGTGACATGGGGGTT CTGCTGGGCCTCTCGAGCCTAGTGGGTGTGACATGGGGGTT Direct Loss 0.932650152722687 0 NA NA prediction 0.865300305445375 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57719753 chr16:57719753 synonymous SNV . 0 21 hm7G_associated_SNPs_6920 0 0 0 0 1 ADGRG3 chr16:57719838 5'GT 57719838 Upstream 86bp 6687 chr6 24532351 24532351 1 + G A rs144177566 24532351 + 24532331 24532371 41 ATCTTAACTTTGGCAGGTTCGATACAGAGGAGGAGGCTATA ATCTTAACTTTGGCAGGTTCAATACAGAGGAGGAGGCTATA Direct Loss 0.932644617340998 0 NA NA prediction 0.865289234681996 Functional Loss - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24532351 chr6:24532351 nonsynonymous SNV 0.224 1 21 hm7G_associated_SNPs_6922 2 0 1 0 2 ALDH5A1 chr6:24532347 3'AG 24532347 Downstream 5bp 6688 chr6 24532351 24532351 1 + G A rs144177566 24532351 + 24532331 24532371 41 ATCTTAACTTTGGCAGGTTCGATACAGAGGAGGAGGCTATA ATCTTAACTTTGGCAGGTTCAATACAGAGGAGGAGGCTATA Direct Loss 0.932644617340998 0 NA NA prediction 0.865289234681996 Functional Loss - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24532351 chr6:24532351 nonsynonymous SNV 0.224 1 21 hm7G_associated_SNPs_6922 2 0 1 0 2 ALDH5A1 chr6:24532405 5'GT 24532405 Upstream 55bp 6689 chr17 21215510 21215510 1 + G T SARC 21215510 + 21215490 21215530 41 TGGGGGACCCCGTTCCAGCAGCTGAAGCAGGTGGTGGAGGA TGGGGGACCCCGTTCCAGCATCTGAAGCAGGTGGTGGAGGA Direct Loss 0.932633114935503 0 NA NA prediction 0.865266229871006 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215510 chr17:21215510 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6925 0 0 1 0 2 MAP2K3 chr17:21215454 3'AG 21215454 Downstream 57bp 6690 chr17 21215510 21215510 1 + G T SARC 21215510 + 21215490 21215530 41 TGGGGGACCCCGTTCCAGCAGCTGAAGCAGGTGGTGGAGGA TGGGGGACCCCGTTCCAGCATCTGAAGCAGGTGGTGGAGGA Direct Loss 0.932633114935503 0 NA NA prediction 0.865266229871006 Functional Loss - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215510 chr17:21215510 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6925 0 0 1 0 2 MAP2K3 chr17:21215593 5'GT 21215593 Upstream 84bp 6691 chr12 52699530 52699530 1 + G A SARC 52699530 + 52699510 52699550 41 ATCAACGAGCTGAACCGCATGATCCAGAGGCTGACGGCTGA ATCAACGAGCTGAACCGCATAATCCAGAGGCTGACGGCTGA Direct Loss 0.93262538843358 0 NA NA prediction 0.865250776867159 Functional Loss - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52699530 chr12:52699530 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6926 0 0 0 0 1 KRT86 chr12:52699572 5'GT 52699572 Upstream 43bp 6692 chr5 145718768 145718768 1 + G T LUSC 145718768 + 145718748 145718788 41 CACTCTGGCTCCGAGGCCATGCGCCGAGTCTGTCTCCCAGC CACTCTGGCTCCGAGGCCATTCGCCGAGTCTGTCTCCCAGC Direct Loss 0.93260449029476 0 NA NA prediction 0.865208980589521 Functional Loss - POU4F3 ENSG00000091009;ENSG00000091010 CDS Human other chr5:145718768 chr5:145718768 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6928 0 0 0 0 1 POU4F3 chr5:145718795 5'GT 145718795 Upstream 28bp 6693 chr18 21099063 21099063 1 + G C UCEC 21099063 + 21099043 21099083 41 TGTAAAAAGATGCACATATTGAAGTTAAATAGGACGGGAAA TGTAAAAAGATGCACATATTCAAGTTAAATAGGACGGGAAA Direct Loss 0.932604481758553 0 NA NA prediction 0.865208963517107 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21099063 chr18:21099063 nonsynonymous SNV 0.942 4 21 hm7G_associated_SNPs_6929 0 0 1 0 2 C18orf8 chr18:21099033 3'AG 21099033 Downstream 31bp 6694 chr18 21099063 21099063 1 + G C UCEC 21099063 + 21099043 21099083 41 TGTAAAAAGATGCACATATTGAAGTTAAATAGGACGGGAAA TGTAAAAAGATGCACATATTCAAGTTAAATAGGACGGGAAA Direct Loss 0.932604481758553 0 NA NA prediction 0.865208963517107 Functional Loss - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21099063 chr18:21099063 nonsynonymous SNV 0.942 4 21 hm7G_associated_SNPs_6929 0 0 1 0 2 C18orf8 chr18:21099138 5'GT 21099138 Upstream 76bp 6695 chr3 148714556 148714556 1 + G A MESO 148714556 + 148714536 148714576 41 CAAATATTGATGATCTTTTTGACAGAGAAGAATTGTCAGCA CAAATATTGATGATCTTTTTAACAGAGAAGAATTGTCAGCA Direct Loss 0.932600210694841 0 NA NA prediction 0.865200421389682 Functional Loss - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714556 chr3:148714556 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_6931 0 0 0 0 1 GYG1 chr3:148714529 3'AG 148714529 Downstream 28bp 6696 chr9 916765 916765 1 + G A BLCA 916765 + 916745 916785 41 TTCTTTTTTCTTAAGCAGATGAAGAACATGGAGAACCGCCA TTCTTTTTTCTTAAGCAGATAAAGAACATGGAGAACCGCCA Direct Loss 0.932592534692176 0 NA NA prediction 0.865185069384353 Functional Loss - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:916765 chr9:916765 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_6932 0 0 0 0 1 DMRT1 chr9:916763 3'AG 916763 Downstream 3bp 6697 chr22 39817889 39817889 1 + G A GBM 39817889 + 39817869 39817909 41 ATCCATGGGGCACAGCCGCTGGATGGGGTGACGGGCTTCTT ATCCATGGGGCACAGCCGCTAGATGGGGTGACGGGCTTCTT Direct Loss 0.932583551641903 0 NA NA prediction 0.865167103283807 Functional Loss - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39817889 chr22:39817889 synonymous SNV . 0 21 hm7G_associated_SNPs_6933 0 0 0 0 2 TAB1 chr22:39817832 3'AG 39817832 Downstream 58bp 6698 chr22 39817889 39817889 1 + G A GBM 39817889 + 39817869 39817909 41 ATCCATGGGGCACAGCCGCTGGATGGGGTGACGGGCTTCTT ATCCATGGGGCACAGCCGCTAGATGGGGTGACGGGCTTCTT Direct Loss 0.932583551641903 0 NA NA prediction 0.865167103283807 Functional Loss - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39817889 chr22:39817889 synonymous SNV . 0 21 hm7G_associated_SNPs_6933 0 0 0 0 2 TAB1 chr22:39817976 5'GT 39817976 Upstream 88bp 6699 chr10 70513624 70513624 1 + G C LUSC 70513624 + 70513604 70513644 41 TTCAGTCCCAGTTGTGACATGATGGAACTAAGGCGCCGTTA TTCAGTCCCAGTTGTGACATCATGGAACTAAGGCGCCGTTA Direct Loss 0.932576339310112 0 NA NA prediction 0.865152678620224 Functional Loss - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70513624 chr10:70513624 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6934 0 0 1 0 1 CCAR1 chr10:70513609 3'AG 70513609 Downstream 16bp 6700 chr1 11718362 11718362 1 + G A OV 11718362 + 11718342 11718382 41 GCCTGGATGTGAATGGAGGCGATGAGTGGAAGGTGGAGGAT GCCTGGATGTGAATGGAGGCAATGAGTGGAAGGTGGAGGAT Direct Loss 0.932574709599848 0 NA NA prediction 0.865149419199695 Functional Loss - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718362 chr1:11718362 nonsynonymous SNV 0.878 1 21 hm7G_associated_SNPs_6935 0 0 1 0 3 FBXO44 chr1:11718324 3'AG 11718324 Downstream 39bp 6701 chr1 11718362 11718362 1 + G A OV 11718362 + 11718342 11718382 41 GCCTGGATGTGAATGGAGGCGATGAGTGGAAGGTGGAGGAT GCCTGGATGTGAATGGAGGCAATGAGTGGAAGGTGGAGGAT Direct Loss 0.932574709599848 0 NA NA prediction 0.865149419199695 Functional Loss - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718362 chr1:11718362 nonsynonymous SNV 0.878 1 21 hm7G_associated_SNPs_6935 0 0 1 0 3 FBXO44 chr1:11718421 5'GT 11718421 Upstream 60bp 6702 chr1 11718362 11718362 1 + G A OV 11718362 + 11718342 11718382 41 GCCTGGATGTGAATGGAGGCGATGAGTGGAAGGTGGAGGAT GCCTGGATGTGAATGGAGGCAATGAGTGGAAGGTGGAGGAT Direct Loss 0.932574709599848 0 NA NA prediction 0.865149419199695 Functional Loss - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718362 chr1:11718362 nonsynonymous SNV 0.878 1 21 hm7G_associated_SNPs_6935 0 0 1 0 3 FBXO44 chr1:11718450 5'GT 11718450 Upstream 89bp 6703 chr1 154962733 154962733 1 + G A UCEC 154962733 + 154962713 154962753 41 TCTACAGGACACTATCAAGAGGTACTAGGGGCCTGGAGGTT TCTACAGGACACTATCAAGAAGTACTAGGGGCCTGGAGGTT Direct Loss 0.932573756366078 0 NA NA prediction 0.865147512732156 Functional Loss - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962733 chr1:154962733 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6936 0 0 1 0 2 FLAD1 chr1:154962635 3'AG 154962635 Downstream 99bp 6704 chr1 154962733 154962733 1 + G A UCEC 154962733 + 154962713 154962753 41 TCTACAGGACACTATCAAGAGGTACTAGGGGCCTGGAGGTT TCTACAGGACACTATCAAGAAGTACTAGGGGCCTGGAGGTT Direct Loss 0.932573756366078 0 NA NA prediction 0.865147512732156 Functional Loss - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962733 chr1:154962733 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6936 0 0 1 0 2 FLAD1 chr1:154962733 5'GT 154962733 Upstream 1bp 6705 chr6 7404738 7404738 1 + G A rs78123723 7404738 + 7404718 7404758 41 ATTCAGTACATGAGAAGAATGTATCAGGATGCCAGACTTGT ATTCAGTACATGAGAAGAATATATCAGGATGCCAGACTTGT Direct Loss 0.932569874591147 0 NA NA prediction 0.865139749182294 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404738 chr6:7404738 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6937 0 0 1 0 2 RIOK1 chr6:7404651 3'AG 7404651 Downstream 88bp 6706 chr6 7404738 7404738 1 + G A rs78123723 7404738 + 7404718 7404758 41 ATTCAGTACATGAGAAGAATGTATCAGGATGCCAGACTTGT ATTCAGTACATGAGAAGAATATATCAGGATGCCAGACTTGT Direct Loss 0.932569874591147 0 NA NA prediction 0.865139749182294 Functional Loss - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404738 chr6:7404738 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6937 0 0 1 0 2 RIOK1 chr6:7404788 5'GT 7404788 Upstream 51bp 6707 chr1 52876830 52876830 1 + G A UCEC 52876830 + 52876810 52876850 41 GAGTTTATTGATGAACTATTGCACAGTGAGAGAGTCTGTGA GAGTTTATTGATGAACTATTACACAGTGAGAGAGTCTGTGA Direct Loss 0.932568476403849 0 NA NA prediction 0.865136952807697 Functional Loss - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52876830 chr1:52876830 synonymous SNV . 0 21 hm7G_associated_SNPs_6938 0 0 1 0 1 PRPF38A chr1:52876872 5'GT 52876872 Upstream 43bp 6708 chr16 84229050 84229050 1 + G C LUSC 84229050 + 84229030 84229070 41 ATCGCCCGCAGGGCCCTGCTGAGGTGAGGGGCAGTGGGGTG ATCGCCCGCAGGGCCCTGCTCAGGTGAGGGGCAGTGGGGTG Direct Loss 0.93256523618371 0 NA NA prediction 0.86513047236742 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84229050 chr16:84229050 synonymous SNV . 0 21 hm7G_associated_SNPs_6939 0 0 0 0 1 ADAD2 chr16:84229052 5'GT 84229052 Upstream 3bp 6709 chr18 19209068 19209068 1 + G A LUSC 19209068 + 19209048 19209088 41 AAGAGGAAGAGGACGTGGCCGTGGCAGAGGAAGAGGGGGTC AAGAGGAAGAGGACGTGGCCATGGCAGAGGAAGAGGGGGTC Direct Loss 0.932564057817996 0 NA NA prediction 0.865128115635992 Functional Loss - SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209068 chr18:19209068 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_6940 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 46bp 6710 chr10 98092340 98092340 1 + G A SKCM 98092340 + 98092320 98092360 41 TGCCTTTGCCCTGTTGGGATGGACTGGCTCCCGGGTAAGTG TGCCTTTGCCCTGTTGGGATAGACTGGCTCCCGGGTAAGTG Direct Loss 0.932561120869936 0 NA NA prediction 0.865122241739872 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98092340 chr10:98092340 stopgain 0.981 1 21 hm7G_associated_SNPs_6941 0 0 0 0 1 DNTT chr10:98092353 5'GT 98092353 Upstream 14bp 6711 chr4 187179225 187179225 1 + G T LUAD 187179225 + 187179205 187179245 41 CACAATGGAATGTGGCGTTTGGTGGGCATCACCAGCTGGGG CACAATGGAATGTGGCGTTTTGTGGGCATCACCAGCTGGGG Direct Loss 0.93255809512504 0 NA NA prediction 0.86511619025008 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187179225 chr4:187179225 nonsynonymous SNV 0.897 4 21 hm7G_associated_SNPs_6942 0 0 0 0 1 KLKB1 chr4:187179175 3'AG 187179175 Downstream 51bp 6712 chr10 94070946 94070946 1 + G A CESC 94070946 + 94070926 94070966 41 GATAGAACAGCTGAATGGGTGAGACCATGCAGGTGCAGAGG GATAGAACAGCTGAATGGGTAAGACCATGCAGGTGCAGAGG Direct Loss 0.93255768727041 0 NA NA prediction 0.865115374540821 Functional Loss - MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94070946 chr10:94070946 synonymous SNV . 0 21 hm7G_associated_SNPs_6943 0 0 1 0 1 MARCH5 chr10:94070892 3'AG 94070892 Downstream 55bp 6713 chr4 69972908 69972908 1 + G C STAD 69972908 + 69972888 69972928 41 AACAGGTTCTGTGGAGATTTGATGGGAATAAACCAGATACC AACAGGTTCTGTGGAGATTTCATGGGAATAAACCAGATACC Direct Loss 0.932549656533425 0 NA NA prediction 0.865099313066849 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69972908 chr4:69972908 nonsynonymous SNV 0.940 3 21 hm7G_associated_SNPs_6946 0 0 0 0 2 UGT2B7 chr4:69972893 3'AG 69972893 Downstream 16bp 6714 chr4 69972908 69972908 1 + G C STAD 69972908 + 69972888 69972928 41 AACAGGTTCTGTGGAGATTTGATGGGAATAAACCAGATACC AACAGGTTCTGTGGAGATTTCATGGGAATAAACCAGATACC Direct Loss 0.932549656533425 0 NA NA prediction 0.865099313066849 Functional Loss - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69972908 chr4:69972908 nonsynonymous SNV 0.940 3 21 hm7G_associated_SNPs_6946 0 0 0 0 2 UGT2B7 chr4:69972980 5'GT 69972980 Upstream 73bp 6715 chr9 95776211 95776211 1 + G C CESC 95776211 + 95776191 95776231 41 GTCAACCCGGCCAATGAACTGATCAAGGAGGGCCAAATCCA GTCAACCCGGCCAATGAACTCATCAAGGAGGGCCAAATCCA Direct Loss 0.932544670403048 0 NA NA prediction 0.865089340806096 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95776211 chr9:95776211 synonymous SNV . 0 21 hm7G_associated_SNPs_6947 0 0 0 0 2 FGD3 chr9:95776134 3'AG 95776134 Downstream 78bp 6716 chr9 95776211 95776211 1 + G C CESC 95776211 + 95776191 95776231 41 GTCAACCCGGCCAATGAACTGATCAAGGAGGGCCAAATCCA GTCAACCCGGCCAATGAACTCATCAAGGAGGGCCAAATCCA Direct Loss 0.932544670403048 0 NA NA prediction 0.865089340806096 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95776211 chr9:95776211 synonymous SNV . 0 21 hm7G_associated_SNPs_6947 0 0 0 0 2 FGD3 chr9:95776280 5'GT 95776280 Upstream 70bp 6717 chr7 24324907 24324907 1 + G T SKCM 24324907 + 24324887 24324927 41 TCCGGACTGACCCTCGCCCTGTCCCTGCTCGTGTGCCTGGG TCCGGACTGACCCTCGCCCTTTCCCTGCTCGTGTGCCTGGG Direct Loss 0.932539648223121 0 NA NA prediction 0.865079296446242 Functional Loss - NPY ENSG00000122585 CDS Human protein_coding chr7:24324907 chr7:24324907 synonymous SNV . 0 21 hm7G_associated_SNPs_6949 0 0 0 0 1 NPY chr7:24324860 3'AG 24324860 Downstream 48bp 6718 chr7 142988693 142988693 1 + G A rs61732978 142988693 + 142988673 142988713 41 ACTCTAAAAAAGAACCGAGTGGTGCTAGCCAAACAGCTGTT ACTCTAAAAAAGAACCGAGTAGTGCTAGCCAAACAGCTGTT Direct Loss 0.932534899611878 0 NA NA prediction 0.865069799223755 Functional Loss - CASP2 ENSG00000106144 CDS Human protein_coding chr7:142988693 chr7:142988693 synonymous SNV . 0 21 hm7G_associated_SNPs_6951 0 0 1 5 2 CASP2 chr7:142988633 3'AG 142988633 Downstream 61bp 6719 chr7 142988693 142988693 1 + G A rs61732978 142988693 + 142988673 142988713 41 ACTCTAAAAAAGAACCGAGTGGTGCTAGCCAAACAGCTGTT ACTCTAAAAAAGAACCGAGTAGTGCTAGCCAAACAGCTGTT Direct Loss 0.932534899611878 0 NA NA prediction 0.865069799223755 Functional Loss - CASP2 ENSG00000106144 CDS Human protein_coding chr7:142988693 chr7:142988693 synonymous SNV . 0 21 hm7G_associated_SNPs_6951 0 0 1 5 2 CASP2 chr7:142988783 5'GT 142988783 Upstream 91bp 6720 chr14 20923850 20923850 1 + G A SKCM 20923850 + 20923830 20923870 41 CGGTGGCGGAAGACGGGGATGAGCTCAGGACAGGTAAGGGA CGGTGGCGGAAGACGGGGATAAGCTCAGGACAGGTAAGGGA Direct Loss 0.93253304939573 0 NA NA prediction 0.865066098791461 Functional Loss - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20923850 chr14:20923850 nonsynonymous SNV 0.294 0 21 hm7G_associated_SNPs_6952 0 0 1 0 1 APEX1 chr14:20923862 5'GT 20923862 Upstream 13bp 6721 chr1 28138698 28138698 1 + G A HNSC 28138698 + 28138678 28138718 41 GAGGAGTGGAACCAGATGCAGAGCCAGGAGGATGAGGTGGC GAGGAGTGGAACCAGATGCAAAGCCAGGAGGATGAGGTGGC Direct Loss 0.932532733712903 0 NA NA prediction 0.865065467425805 Functional Loss - STX12 ENSG00000117758 CDS Human protein_coding chr1:28138698 chr1:28138698 synonymous SNV . 0 21 hm7G_associated_SNPs_6953 0 0 1 0 2 STX12 chr1:28138674 3'AG 28138674 Downstream 25bp 6722 chr1 28138698 28138698 1 + G A HNSC 28138698 + 28138678 28138718 41 GAGGAGTGGAACCAGATGCAGAGCCAGGAGGATGAGGTGGC GAGGAGTGGAACCAGATGCAAAGCCAGGAGGATGAGGTGGC Direct Loss 0.932532733712903 0 NA NA prediction 0.865065467425805 Functional Loss - STX12 ENSG00000117758 CDS Human protein_coding chr1:28138698 chr1:28138698 synonymous SNV . 0 21 hm7G_associated_SNPs_6953 0 0 1 0 2 STX12 chr1:28138779 5'GT 28138779 Upstream 82bp 6723 chr9 117400829 117400829 1 + G T rs542041191 117400829 + 117400809 117400849 41 CTGTTTCCTTTGCAGTCCTTGCTGAGAAGCAGATTGAGCCA CTGTTTCCTTTGCAGTCCTTTCTGAGAAGCAGATTGAGCCA Direct Loss 0.932519939883428 0 NA NA prediction 0.865039879766857 Functional Loss - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117400829 chr9:117400829 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_6954 0 0 0 0 1 TMEM268 chr9:117400824 3'AG 117400824 Downstream 6bp 6724 chr9 137779091 137779091 1 + G T rs7851696 137779091 + 137779071 137779111 41 ATCTTAACACCGGAAATTGTGCTGTGATGTTTCAGGGAGCT ATCTTAACACCGGAAATTGTTCTGTGATGTTTCAGGGAGCT Direct Loss 0.932504769864197 0 NA NA prediction 0.865009539728394 Functional Loss - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137779091 chr9:137779091 nonsynonymous SNV 0.005 2 21 hm7G_associated_SNPs_6956 0 0 0 0 1 FCN2 chr9:137779014 3'AG 137779014 Downstream 78bp 6725 chr2 103063627 103063627 1 + G T LUAD 103063627 + 103063607 103063647 41 CACTGGATTGAAATAGTGCTGCTGTACCGGACCTACCAGAG CACTGGATTGAAATAGTGCTTCTGTACCGGACCTACCAGAG Direct Loss 0.932499823605176 0 NA NA prediction 0.864999647210352 Functional Loss - IL18RAP ENSG00000115607 CDS Human protein_coding chr2:103063627 chr2:103063627 synonymous SNV . 0 21 hm7G_associated_SNPs_6957 0 0 0 0 2 IL18RAP chr2:103063530 3'AG 103063530 Downstream 98bp 6726 chr2 103063627 103063627 1 + G T LUAD 103063627 + 103063607 103063647 41 CACTGGATTGAAATAGTGCTGCTGTACCGGACCTACCAGAG CACTGGATTGAAATAGTGCTTCTGTACCGGACCTACCAGAG Direct Loss 0.932499823605176 0 NA NA prediction 0.864999647210352 Functional Loss - IL18RAP ENSG00000115607 CDS Human protein_coding chr2:103063627 chr2:103063627 synonymous SNV . 0 21 hm7G_associated_SNPs_6957 0 0 0 0 2 IL18RAP chr2:103063667 5'GT 103063667 Upstream 41bp 6727 chr20 61296367 61296367 1 - C A rs148710404 61296367 - 61296347 61296387 41 TTGGGGCTGAACGTGGACATGCCGGTGATGAGAGTGGCCTC TTGGGGCTGAACGTGGACATTCCGGTGATGAGAGTGGCCTC Direct Loss 0.932499702934472 0 NA NA prediction 0.864999405868945 Functional Loss - SLCO4A1 ENSG00000101187 CDS Human antisense chr20:61296367 chr20:61296367 synonymous SNV . 0 21 hm7G_associated_SNPs_6958 0 0 0 0 1 SLCO4A1-AS1 chr20:61296276 5'GT 61296276 Upstream 92bp 6728 chr6 41898427 41898427 1 + G A THYM 41898427 + 41898407 41898447 41 AGGCATTTAAGATCATCCCTGCACTCTCCAACTGGGAGCAA AGGCATTTAAGATCATCCCTACACTCTCCAACTGGGAGCAA Direct Loss 0.932497484457105 0 NA NA prediction 0.864994968914209 Functional Loss - BYSL ENSG00000112578 CDS Human protein_coding chr6:41898427 chr6:41898427 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_6960 0 0 1 0 2 BYSL chr6:41898373 3'AG 41898373 Downstream 55bp 6729 chr6 41898427 41898427 1 + G A THYM 41898427 + 41898407 41898447 41 AGGCATTTAAGATCATCCCTGCACTCTCCAACTGGGAGCAA AGGCATTTAAGATCATCCCTACACTCTCCAACTGGGAGCAA Direct Loss 0.932497484457105 0 NA NA prediction 0.864994968914209 Functional Loss - BYSL ENSG00000112578 CDS Human protein_coding chr6:41898427 chr6:41898427 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_6960 0 0 1 0 2 BYSL chr6:41898506 5'GT 41898506 Upstream 80bp 6730 chr11 824068 824068 1 + G T GBM 824068 + 824048 824088 41 AACATGCTGCCTGTGCGTCTGGCCACGGCCATGATGGTGCC AACATGCTGCCTGTGCGTCTTGCCACGGCCATGATGGTGCC Direct Loss 0.93249536291783 0 NA NA prediction 0.864990725835661 Functional Loss - PNPLA2 ENSG00000177666 CDS Human protein_coding chr11:824068 chr11:824068 synonymous SNV . 0 21 hm7G_associated_SNPs_6961 0 0 1 0 2 PNPLA2 chr11:823998 3'AG 823998 Downstream 71bp 6731 chr11 824068 824068 1 + G T GBM 824068 + 824048 824088 41 AACATGCTGCCTGTGCGTCTGGCCACGGCCATGATGGTGCC AACATGCTGCCTGTGCGTCTTGCCACGGCCATGATGGTGCC Direct Loss 0.93249536291783 0 NA NA prediction 0.864990725835661 Functional Loss - PNPLA2 ENSG00000177666 CDS Human protein_coding chr11:824068 chr11:824068 synonymous SNV . 0 21 hm7G_associated_SNPs_6961 0 0 1 0 2 PNPLA2 chr11:824130 5'GT 824130 Upstream 63bp 6732 chr2 37474692 37474692 1 + G T UCEC 37474692 + 37474672 37474712 41 TCAGTTATTTGCGAAGAATGGCACAGGGAAAAGTAGCCTCT TCAGTTATTTGCGAAGAATGTCACAGGGAAAAGTAGCCTCT Direct Loss 0.93249522155233 0 NA NA prediction 0.864990443104661 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37474692 chr2:37474692 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_6963 0 0 1 1 1 NDUFAF7 chr2:37474599 3'AG 37474599 Downstream 94bp 6733 chr7 16705092 16705092 1 + G T SARC 16705092 + 16705072 16705112 41 AATAAGCATCAGAAGCCAGTGCTAACAGGCCAGCGGTTCAA AATAAGCATCAGAAGCCAGTTCTAACAGGCCAGCGGTTCAA Direct Loss 0.93249415406141 0 NA NA prediction 0.86498830812282 Functional Loss - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16705092 chr7:16705092 synonymous SNV . 0 21 hm7G_associated_SNPs_6965 0 0 1 0 2 BZW2 chr7:16705062 3'AG 16705062 Downstream 31bp 6734 chr7 16705092 16705092 1 + G T SARC 16705092 + 16705072 16705112 41 AATAAGCATCAGAAGCCAGTGCTAACAGGCCAGCGGTTCAA AATAAGCATCAGAAGCCAGTTCTAACAGGCCAGCGGTTCAA Direct Loss 0.93249415406141 0 NA NA prediction 0.86498830812282 Functional Loss - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16705092 chr7:16705092 synonymous SNV . 0 21 hm7G_associated_SNPs_6965 0 0 1 0 2 BZW2 chr7:16705126 5'GT 16705126 Upstream 35bp 6735 chr3 46751145 46751145 1 + G T BLCA 46751145 + 46751125 46751165 41 AAAGTAGAGGAGGATGAGAAGAATGAGGCCAAGAAGAAGAA AAAGTAGAGGAGGATGAGAATAATGAGGCCAAGAAGAAGAA Direct Loss 0.932490172455337 0 NA NA prediction 0.864980344910674 Functional Loss - TMIE ENSG00000181585 CDS Human protein_coding chr3:46751145 chr3:46751145 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6966 0 0 0 0 2 TMIE chr3:46751069 3'AG 46751069 Downstream 77bp 6736 chr3 46751145 46751145 1 + G T BLCA 46751145 + 46751125 46751165 41 AAAGTAGAGGAGGATGAGAAGAATGAGGCCAAGAAGAAGAA AAAGTAGAGGAGGATGAGAATAATGAGGCCAAGAAGAAGAA Direct Loss 0.932490172455337 0 NA NA prediction 0.864980344910674 Functional Loss - TMIE ENSG00000181585 CDS Human protein_coding chr3:46751145 chr3:46751145 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6966 0 0 0 0 2 TMIE chr3:46751071 3'AG 46751071 Downstream 75bp 6737 chr10 45920547 45920547 1 + G A SKCM 45920547 + 45920527 45920567 41 GAGATGGTAGAGTGCAGCCTGGAGCGGCAGCTCAGCTTGGA GAGATGGTAGAGTGCAGCCTAGAGCGGCAGCTCAGCTTGGA Direct Loss 0.932487196209338 0 NA NA prediction 0.864974392418676 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45920547 chr10:45920547 synonymous SNV . 0 21 hm7G_associated_SNPs_6967 0 0 1 0 1 ALOX5 chr10:45920580 5'GT 45920580 Upstream 34bp 6738 chr16 570473 570473 1 + G A SKCM 570473 + 570453 570493 41 CTTCAGGACAACCGCAACCTGAAGGAGCAGAACGAGGAGCT CTTCAGGACAACCGCAACCTAAAGGAGCAGAACGAGGAGCT Direct Loss 0.932485970286845 0 NA NA prediction 0.864971940573689 Functional Loss - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:570473 chr16:570473 synonymous SNV . 0 21 hm7G_associated_SNPs_6968 0 0 0 0 1 RAB11FIP3 chr16:570459 3'AG 570459 Downstream 15bp 6739 chr1 46769487 46769487 1 + G A CESC 46769487 + 46769467 46769507 41 TTACCGAATCCGGAGATCCTGAGGAGGTAAGGCAAGGCGAT TTACCGAATCCGGAGATCCTAAGGAGGTAAGGCAAGGCGAT Direct Loss 0.932467801215505 0 NA NA prediction 0.864935602431011 Functional Loss - UQCRH ENSG00000173660 CDS Human protein_coding chr1:46769487 chr1:46769487 nonsynonymous SNV 0.978 0 21 hm7G_associated_SNPs_6969 0 0 1 0 1 UQCRH chr1:46769492 5'GT 46769492 Upstream 6bp 6740 chr17 9538754 9538754 1 + G A OV 9538754 + 9538734 9538774 41 CAGATAGGCTGTCAGACCCAGAAGCTGGAGGAGGCCCTGAA CAGATAGGCTGTCAGACCCAAAAGCTGGAGGAGGCCCTGAA Direct Loss 0.932460384603657 0 NA NA prediction 0.864920769207313 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9538754 chr17:9538754 synonymous SNV . 0 21 hm7G_associated_SNPs_6970 0 0 0 0 1 CFAP52 chr17:9538722 3'AG 9538722 Downstream 33bp 6741 chr2 216995653 216995653 1 + G T COAD 216995653 + 216995633 216995673 41 AAAGTGGATGAGGAACAAATGAAATATAAATCGGAGGGGAA AAAGTGGATGAGGAACAAATTAAATATAAATCGGAGGGGAA Direct Loss 0.932432998028271 0 NA NA prediction 0.864865996056543 Functional Loss - XRCC5 ENSG00000079246 CDS Human protein_coding chr2:216995653 chr2:216995653 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6971 0 0 1 0 1 XRCC5 chr2:216995710 5'GT 216995710 Upstream 58bp 6742 chr22 21141180 21141180 1 + G A SKCM 21141180 + 21141160 21141200 41 CAGTTCAAGCACCAAGGCACGATCACAGTGAACGAGGAAGG CAGTTCAAGCACCAAGGCACAATCACAGTGAACGAGGAAGG Direct Loss 0.932432575550931 0 NA NA prediction 0.864865151101862 Functional Loss - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21141180 chr22:21141180 synonymous SNV . 0 21 hm7G_associated_SNPs_6972 0 0 1 0 1 SERPIND1 chr22:21141163 3'AG 21141163 Downstream 18bp 6743 chrX 30236712 30236712 1 + G T COAD 30236712 + 30236692 30236732 41 GCCATCATGCCTCGTGGTCAGAAGAGTAAGCTCCGTGCCCG GCCATCATGCCTCGTGGTCATAAGAGTAAGCTCCGTGCCCG Direct Loss 0.932432458580302 0 NA NA prediction 0.864864917160604 Functional Loss - MAGEB2 ENSG00000099399 CDS Human protein_coding chrX:30236712 chrX:30236712 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6973 0 0 1 0 1 MAGEB2 chrX:30236693 3'AG 30236693 Downstream 20bp 6744 chr1 113197177 113197177 1 + G T UCEC 113197177 + 113197157 113197197 41 AATTTGACCACTTACGGAAAGAAGCAAGTGACCCCCAGCCA AATTTGACCACTTACGGAAATAAGCAAGTGACCCCCAGCCA Direct Loss 0.932430040767814 0 NA NA prediction 0.864860081535628 Functional Loss - CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113197177 chr1:113197177 stopgain 1.000 1 21 hm7G_associated_SNPs_6974 0 0 1 0 1 CAPZA1 chr1:113197087 3'AG 113197087 Downstream 91bp 6745 chr11 85365200 85365200 1 + G A UCEC 85365200 + 85365180 85365220 41 TTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGC TTTCGACGCATCTTGAATGTAACAAAGGCTCGCATAGCTGC Direct Loss 0.932424501935989 0 NA NA prediction 0.864849003871977 Functional Loss - TMEM126A ENSG00000171202 CDS Human protein_coding chr11:85365200 chr11:85365200 synonymous SNV . 0 21 hm7G_associated_SNPs_6975 0 0 1 0 1 TMEM126A chr11:85365107 3'AG 85365107 Downstream 94bp 6746 chr1 99164273 99164273 1 + G A BRCA 99164273 + 99164253 99164293 41 TTTTTTTAGAATATTTTGATGAAATGAAAGAATATGGCCCA TTTTTTTAGAATATTTTGATAAAATGAAAGAATATGGCCCA Direct Loss 0.932412366490974 0 NA NA prediction 0.864824732981948 Functional Loss - SNX7 ENSG00000162627 CDS Human protein_coding chr1:99164273 chr1:99164273 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6976 0 0 0 0 1 SNX7 chr1:99164262 3'AG 99164262 Downstream 12bp 6747 chr12 69129095 69129095 1 + G A LUAD 69129095 + 69129075 69129115 41 ATAACGTCTTGTTGTTTGTTGATGGAGGGTGGATGGTGGAT ATAACGTCTTGTTGTTTGTTAATGGAGGGTGGATGGTGGAT Direct Loss 0.932411816714248 0 NA NA prediction 0.864823633428497 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69129095 chr12:69129095 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6977 0 0 1 0 2 NUP107 chr12:69129011 3'AG 69129011 Downstream 85bp 6748 chr12 69129095 69129095 1 + G A LUAD 69129095 + 69129075 69129115 41 ATAACGTCTTGTTGTTTGTTGATGGAGGGTGGATGGTGGAT ATAACGTCTTGTTGTTTGTTAATGGAGGGTGGATGGTGGAT Direct Loss 0.932411816714248 0 NA NA prediction 0.864823633428497 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69129095 chr12:69129095 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6977 0 0 1 0 2 NUP107 chr12:69129124 5'GT 69129124 Upstream 30bp 6749 chr2 233421190 233421190 1 + G T LUAD 233421190 + 233421170 233421210 41 ACAGCACACAGAAAGATGGTGAGAAGGAAAAAACGGAACGA ACAGCACACAGAAAGATGGTTAGAAGGAAAAAACGGAACGA Direct Loss 0.932411732224705 0 NA NA prediction 0.86482346444941 Functional Loss - EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233421190 chr2:233421190 stopgain 1.000 1 21 hm7G_associated_SNPs_6978 0 0 1 0 2 EIF4E2 chr2:233421126 3'AG 233421126 Downstream 65bp 6750 chr2 233421190 233421190 1 + G T LUAD 233421190 + 233421170 233421210 41 ACAGCACACAGAAAGATGGTGAGAAGGAAAAAACGGAACGA ACAGCACACAGAAAGATGGTTAGAAGGAAAAAACGGAACGA Direct Loss 0.932411732224705 0 NA NA prediction 0.86482346444941 Functional Loss - EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233421190 chr2:233421190 stopgain 1.000 1 21 hm7G_associated_SNPs_6978 0 0 1 0 2 EIF4E2 chr2:233421240 5'GT 233421240 Upstream 51bp 6751 chr9 74526743 74526743 1 + G A CHOL 74526743 + 74526723 74526763 41 GACAAGTTCGATAAAAGTGTGCAGACCAAGGTAGGAACCTG GACAAGTTCGATAAAAGTGTACAGACCAAGGTAGGAACCTG Direct Loss 0.932409132766457 0 NA NA prediction 0.864818265532914 Functional Loss - C9orf85 ENSG00000155621 CDS Human protein_coding chr9:74526743 chr9:74526743 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_6979 0 0 1 6 1 C9orf85 chr9:74526752 5'GT 74526752 Upstream 10bp 6752 chr19 54710190 54710190 1 + G T STAD 54710190 + 54710170 54710210 41 CGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTA CGCATTGGGGTGCTGGATGATGGCAAGATGAAGCTGGATTA Direct Loss 0.932407833461542 0 NA NA prediction 0.864815666923084 Functional Loss - RPS9 ENSG00000170889 CDS Human protein_coding chr19:54710190 chr19:54710190 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_6980 0 0 1 0 1 RPS9 chr19:54710144 3'AG 54710144 Downstream 47bp 6753 chr12 113867071 113867071 1 + G T UCEC 113867071 + 113867051 113867091 41 CAGGTGGTGCAGAGGCTGCAGGGGGAGGGGGCCGAGGTTCA CAGGTGGTGCAGAGGCTGCATGGGGAGGGGGCCGAGGTTCA Direct Loss 0.932395433856889 0 NA NA prediction 0.864790867713778 Functional Loss - SDSL ENSG00000139410 CDS Human protein_coding chr12:113867071 chr12:113867071 nonsynonymous SNV 0.624 2 21 hm7G_associated_SNPs_6983 0 0 1 0 1 SDSL chr12:113867104 5'GT 113867104 Upstream 34bp 6754 chr5 76342481 76342481 1 + G A LUSC 76342481 + 76342461 76342501 41 CCAGTGAAGGCAATGTAACTGCAGAAGATAGTGAGGATGAA CCAGTGAAGGCAATGTAACTACAGAAGATAGTGAGGATGAA Direct Loss 0.93238636934769 0 NA NA prediction 0.86477273869538 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76342481 chr5:76342481 nonsynonymous SNV 0.016 1 21 hm7G_associated_SNPs_6984 0 0 1 0 1 AGGF1 chr5:76342502 5'GT 76342502 Upstream 22bp 6755 chr21 36079590 36079590 1 + G A SKCM 36079590 + 36079570 36079610 41 ACTTGTAGGCTGGTTATGATGGTGAGAGTATCGGAAATTGC ACTTGTAGGCTGGTTATGATAGTGAGAGTATCGGAAATTGC Direct Loss 0.932377568795522 0 NA NA prediction 0.864755137591044 Functional Loss - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36079590 chr21:36079590 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6985 0 0 0 0 2 CLIC6 chr21:36079578 3'AG 36079578 Downstream 13bp 6756 chr21 36079590 36079590 1 + G A SKCM 36079590 + 36079570 36079610 41 ACTTGTAGGCTGGTTATGATGGTGAGAGTATCGGAAATTGC ACTTGTAGGCTGGTTATGATAGTGAGAGTATCGGAAATTGC Direct Loss 0.932377568795522 0 NA NA prediction 0.864755137591044 Functional Loss - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36079590 chr21:36079590 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_6985 0 0 0 0 2 CLIC6 chr21:36079687 5'GT 36079687 Upstream 98bp 6757 chr19 56180859 56180859 1 + G A GBM 56180859 + 56180839 56180879 41 GCAAGTGCCGGGCTTGATGAGCTCCCAGGTGCAGATGGGCG GCAAGTGCCGGGCTTGATGAACTCCCAGGTGCAGATGGGCG Direct Loss 0.932365202404255 0 NA NA prediction 0.864730404808509 Functional Loss - U2AF2 ENSG00000063244 CDS Human protein_coding chr19:56180859 chr19:56180859 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_6986 0 0 1 0 1 U2AF2 chr19:56180810 3'AG 56180810 Downstream 50bp 6758 chr19 11658624 11658624 1 + G A SKCM 11658624 + 11658604 11658644 41 CCACCTAGGCGAAGACGAAAGGAAACAAGGTGAACGTGGGA CCACCTAGGCGAAGACGAAAAGAAACAAGGTGAACGTGGGA Direct Loss 0.932360810661721 0 NA NA prediction 0.864721621323441 Functional Loss - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11658624 chr19:11658624 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6987 0 0 0 0 2 CNN1 chr19:11658612 3'AG 11658612 Downstream 13bp 6759 chr19 11658624 11658624 1 + G A SKCM 11658624 + 11658604 11658644 41 CCACCTAGGCGAAGACGAAAGGAAACAAGGTGAACGTGGGA CCACCTAGGCGAAGACGAAAAGAAACAAGGTGAACGTGGGA Direct Loss 0.932360810661721 0 NA NA prediction 0.864721621323441 Functional Loss - CNN1 ENSG00000130176 CDS Human protein_coding chr19:11658624 chr19:11658624 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_6987 0 0 0 0 2 CNN1 chr19:11658722 5'GT 11658722 Upstream 99bp 6760 chr14 96904217 96904217 1 + G A SKCM 96904217 + 96904197 96904237 41 TTGCTGCTGGACTCCAGTATGGAGCGGAAGGAGGCATGTTA TTGCTGCTGGACTCCAGTATAGAGCGGAAGGAGGCATGTTA Direct Loss 0.932358156172958 0 NA NA prediction 0.864716312345917 Functional Loss - AK7 ENSG00000140057 CDS Human protein_coding chr14:96904217 chr14:96904217 nonsynonymous SNV 0.907 4 21 hm7G_associated_SNPs_6988 0 0 0 0 2 AK7 chr14:96904172 3'AG 96904172 Downstream 46bp 6761 chr14 96904217 96904217 1 + G A SKCM 96904217 + 96904197 96904237 41 TTGCTGCTGGACTCCAGTATGGAGCGGAAGGAGGCATGTTA TTGCTGCTGGACTCCAGTATAGAGCGGAAGGAGGCATGTTA Direct Loss 0.932358156172958 0 NA NA prediction 0.864716312345917 Functional Loss - AK7 ENSG00000140057 CDS Human protein_coding chr14:96904217 chr14:96904217 nonsynonymous SNV 0.907 4 21 hm7G_associated_SNPs_6988 0 0 0 0 2 AK7 chr14:96904252 5'GT 96904252 Upstream 36bp 6762 chr20 2844844 2844844 1 + G A LUAD 2844844 + 2844824 2844864 41 GCTGCTGGAGTATGAGCCACGCTCAGGGGAGCAGGTACCCC GCTGCTGGAGTATGAGCCACACTCAGGGGAGCAGGTACCCC Direct Loss 0.932354777981144 0 NA NA prediction 0.864709555962287 Functional Loss - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844844 chr20:2844844 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6989 0 0 1 0 1 VPS16 chr20:2844933 5'GT 2844933 Upstream 90bp 6763 chr8 99139948 99139948 1 + G T LUSC 99139948 + 99139928 99139968 41 AAAAGGGAGGATGGAAAGCAGGTCCCGAGGGCACGTCTCAG AAAAGGGAGGATGGAAAGCATGTCCCGAGGGCACGTCTCAG Direct Loss 0.932353366873227 0 NA NA prediction 0.864706733746454 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99139948 chr8:99139948 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_6990 0 0 0 0 1 POP1 chr8:99139990 5'GT 99139990 Upstream 43bp 6764 chr5 40959559 40959559 1 + G A SKCM 40959559 + 40959539 40959579 41 CTCATCTTGTAGGAGGGGTTGATGGAGGTTGGAGTTGCTGG CTCATCTTGTAGGAGGGGTTAATGGAGGTTGGAGTTGCTGG Direct Loss 0.932347379793421 0 NA NA prediction 0.864694759586842 Functional Loss - C7 ENSG00000112936 CDS Human protein_coding chr5:40959559 chr5:40959559 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_6991 0 0 0 0 1 C7 chr5:40959551 3'AG 40959551 Downstream 9bp 6765 chr18 3253901 3253901 1 + G A BRCA 3253901 + 3253881 3253921 41 ATTTAGGGAAGAATCCAACTGATGAGTATCTAGATGCCATG ATTTAGGGAAGAATCCAACTAATGAGTATCTAGATGCCATG Direct Loss 0.932337824881729 0 NA NA prediction 0.864675649763457 Functional Loss - MYL12A ENSG00000101608 CDS Human protein_coding chr18:3253901 chr18:3253901 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_6992 0 0 1 0 1 MYL12A chr18:3253887 3'AG 3253887 Downstream 15bp 6766 chr19 1979936 1979936 1 + G A CESC 1979936 + 1979916 1979956 41 AACTCCACCAACGGGGAGCTGAATGCGGACGACCCCACGGC AACTCCACCAACGGGGAGCTAAATGCGGACGACCCCACGGC Direct Loss 0.932335629783501 0 NA NA prediction 0.864671259567002 Functional Loss - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979936 chr19:1979936 synonymous SNV . 0 21 hm7G_associated_SNPs_6993 0 0 1 0 2 CSNK1G2 chr19:1979910 3'AG 1979910 Downstream 27bp 6767 chr19 1979936 1979936 1 + G A CESC 1979936 + 1979916 1979956 41 AACTCCACCAACGGGGAGCTGAATGCGGACGACCCCACGGC AACTCCACCAACGGGGAGCTAAATGCGGACGACCCCACGGC Direct Loss 0.932335629783501 0 NA NA prediction 0.864671259567002 Functional Loss - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979936 chr19:1979936 synonymous SNV . 0 21 hm7G_associated_SNPs_6993 0 0 1 0 2 CSNK1G2 chr19:1980016 5'GT 1980016 Upstream 81bp 6768 chr2 73475016 73475016 1 + G C UCEC 73475016 + 73474996 73475036 41 TCGAGCTCGAGTTGAAAGCTGAGAAAGACAATGCTGAGATA TCGAGCTCGAGTTGAAAGCTCAGAAAGACAATGCTGAGATA Direct Loss 0.932332204314765 0 NA NA prediction 0.86466440862953 Functional Loss - CCT7 ENSG00000135624 CDS Human protein_coding chr2:73475016 chr2:73475016 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_6995 0 0 1 0 1 CCT7 chr2:73475054 5'GT 73475054 Upstream 39bp 6769 chr8 20069169 20069169 1 + G T SARC 20069169 + 20069149 20069189 41 ACTTTGTTCATCAGATTGCAGCTCAGATCTGTCGCCAGGCT ACTTTGTTCATCAGATTGCATCTCAGATCTGTCGCCAGGCT Direct Loss 0.932324697096751 0 NA NA prediction 0.864649394193502 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20069169 chr8:20069169 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6996 0 0 1 0 2 ATP6V1B2 chr8:20069163 3'AG 20069163 Downstream 7bp 6770 chr8 20069169 20069169 1 + G T SARC 20069169 + 20069149 20069189 41 ACTTTGTTCATCAGATTGCAGCTCAGATCTGTCGCCAGGCT ACTTTGTTCATCAGATTGCATCTCAGATCTGTCGCCAGGCT Direct Loss 0.932324697096751 0 NA NA prediction 0.864649394193502 Functional Loss - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20069169 chr8:20069169 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_6996 0 0 1 0 2 ATP6V1B2 chr8:20069264 5'GT 20069264 Upstream 96bp 6771 chr2 207804380 207804380 1 + G A SARC 207804380 + 207804360 207804400 41 ATGCTGGTTCCTGGAGGGCTGGGATATGATAGGTGAGTGTA ATGCTGGTTCCTGGAGGGCTAGGATATGATAGGTGAGTGTA Direct Loss 0.932306249295975 0 NA NA prediction 0.864612498591949 Functional Loss - CPO ENSG00000144410 CDS Human protein_coding chr2:207804380 chr2:207804380 synonymous SNV . 0 21 hm7G_associated_SNPs_6998 0 0 1 0 1 CPO chr2:207804391 5'GT 207804391 Upstream 12bp 6772 chr11 118851277 118851277 1 + G T SARC 118851277 + 118851257 118851297 41 CAATCTCTGTTTTCGAGACAGCTTTGAGAAAGTGCCTGTCA CAATCTCTGTTTTCGAGACATCTTTGAGAAAGTGCCTGTCA Direct Loss 0.932301056215522 0 NA NA prediction 0.864602112431044 Functional Loss - FOXR1 ENSG00000176302;ENSG00000176302 exonic;splicing Human protein_coding chr11:118851277 chr11:118851277 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_6999 0 0 0 0 1 FOXR1 chr11:118851200 3'AG 118851200 Downstream 78bp 6773 chr16 90097808 90097808 1 + G A COAD 90097808 + 90097788 90097828 41 AAGATCCACACCTTCTGGGAGATCACACGGAGGCAGCTGGA AAGATCCACACCTTCTGGGAAATCACACGGAGGCAGCTGGA Direct Loss 0.932297045267435 0 NA NA prediction 0.864594090534871 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90097808 chr16:90097808 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_7000 0 0 1 0 1 GAS8 chr16:90097904 5'GT 90097904 Upstream 97bp 6774 chr7 134253029 134253029 1 + G A LGG 134253029 + 134253009 134253049 41 GGAGAAGCCATCCAAGAGAAGATCCAAGAGAAGGCTGTGAT GGAGAAGCCATCCAAGAGAAAATCCAAGAGAAGGCTGTGAT Direct Loss 0.932284660367184 0 NA NA prediction 0.864569320734367 Functional Loss - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134253029 chr7:134253029 synonymous SNV . 0 21 hm7G_associated_SNPs_7002 0 0 0 0 1 AKR1B15 chr7:134253077 5'GT 134253077 Upstream 49bp 6775 chrX 153496061 153496061 1 + G A UCEC 153496061 + 153496041 153496081 41 GAATCCACCCAGAAGGCAGAGAAGGAAGTGACGCGCATGGT GAATCCACCCAGAAGGCAGAAAAGGAAGTGACGCGCATGGT Direct Loss 0.932282943790028 0 NA NA prediction 0.864565887580055 Functional Loss - OPN1MW;OPN1MW2;OPN1MW3 ENSG00000166160 CDS Human protein_coding chrX:153496061 chrX:153496061 synonymous SNV . 0 21 hm7G_associated_SNPs_7004 0 0 0 0 1 OPN1MW;OPN1MW2;OPN1MW3 chrX:153496017 3'AG 153496017 Downstream 45bp 6776 chr3 129814959 129814959 1 + G A rs148442372 129814959 + 129814939 129814979 41 GACCTGCCCATGAAGGTGGTGGACATGTTCAGGTGCTGTTT GACCTGCCCATGAAGGTGGTAGACATGTTCAGGTGCTGTTT Direct Loss 0.932277769266507 0 NA NA prediction 0.864555538533013 Functional Loss - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129814959 chr3:129814959 . . 0 21 hm7G_associated_SNPs_7005 0 0 0 0 1 ALG1L2 chr3:129815006 5'GT 129815006 Upstream 48bp 6777 chr1 65146982 65146982 1 + G A BLCA 65146982 + 65146962 65147002 41 ACCTGGAGAATGACAGAGATGAAAGGGACGACGACAGCCAC ACCTGGAGAATGACAGAGATAAAAGGGACGACGACAGCCAC Direct Loss 0.932262759753667 0 NA NA prediction 0.864525519507334 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65146982 chr1:65146982 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7009 0 0 1 0 2 CACHD1 chr1:65146941 3'AG 65146941 Downstream 42bp 6778 chr1 65146982 65146982 1 + G A BLCA 65146982 + 65146962 65147002 41 ACCTGGAGAATGACAGAGATGAAAGGGACGACGACAGCCAC ACCTGGAGAATGACAGAGATAAAAGGGACGACGACAGCCAC Direct Loss 0.932262759753667 0 NA NA prediction 0.864525519507334 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65146982 chr1:65146982 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7009 0 0 1 0 2 CACHD1 chr1:65147018 5'GT 65147018 Upstream 37bp 6779 chr14 20824776 20824776 1 + G A BLCA 20824776 + 20824756 20824796 41 CTATGGCATGGTTCCAGGATGAGTAACTGGGTGGGAATCTT CTATGGCATGGTTCCAGGATAAGTAACTGGGTGGGAATCTT Direct Loss 0.932261703730183 0 NA NA prediction 0.864523407460366 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20824776 chr14:20824776 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_7010 0 0 1 0 2 PARP2 chr14:20824749 3'AG 20824749 Downstream 28bp 6780 chr14 20824776 20824776 1 + G A BLCA 20824776 + 20824756 20824796 41 CTATGGCATGGTTCCAGGATGAGTAACTGGGTGGGAATCTT CTATGGCATGGTTCCAGGATAAGTAACTGGGTGGGAATCTT Direct Loss 0.932261703730183 0 NA NA prediction 0.864523407460366 Functional Loss - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20824776 chr14:20824776 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_7010 0 0 1 0 2 PARP2 chr14:20824848 5'GT 20824848 Upstream 73bp 6781 chr10 95400233 95400233 1 + G C BLCA 95400233 + 95400213 95400253 41 ACCAGATGGATGTACACTGTGAGGAAAGGGTACCGAGCTGT ACCAGATGGATGTACACTGTCAGGAAAGGGTACCGAGCTGT Direct Loss 0.93226136509611 0 NA NA prediction 0.864522730192221 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400233 chr10:95400233 synonymous SNV . 0 21 hm7G_associated_SNPs_7011 0 0 0 0 2 PDE6C chr10:95400207 3'AG 95400207 Downstream 27bp 6782 chr10 95400233 95400233 1 + G C BLCA 95400233 + 95400213 95400253 41 ACCAGATGGATGTACACTGTGAGGAAAGGGTACCGAGCTGT ACCAGATGGATGTACACTGTCAGGAAAGGGTACCGAGCTGT Direct Loss 0.93226136509611 0 NA NA prediction 0.864522730192221 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400233 chr10:95400233 synonymous SNV . 0 21 hm7G_associated_SNPs_7011 0 0 0 0 2 PDE6C chr10:95400314 5'GT 95400314 Upstream 82bp 6783 chr7 148496387 148496387 1 + G C CESC 148496387 + 148496367 148496407 41 GCGGCCATCGTGAGAATCATGAAGATGAGGAAGGTTCTGAA GCGGCCATCGTGAGAATCATCAAGATGAGGAAGGTTCTGAA Direct Loss 0.932260488150221 0 NA NA prediction 0.864520976300442 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148496387 chr7:148496387 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_7012 0 0 1 0 2 CUL1 chr7:148496367 3'AG 148496367 Downstream 21bp 6784 chr7 148496387 148496387 1 + G C CESC 148496387 + 148496367 148496407 41 GCGGCCATCGTGAGAATCATGAAGATGAGGAAGGTTCTGAA GCGGCCATCGTGAGAATCATCAAGATGAGGAAGGTTCTGAA Direct Loss 0.932260488150221 0 NA NA prediction 0.864520976300442 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148496387 chr7:148496387 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_7012 0 0 1 0 2 CUL1 chr7:148496480 5'GT 148496480 Upstream 94bp 6785 chr2 27597589 27597589 1 + G T LGG 27597589 + 27597569 27597609 41 GCCTATGATGACGATGTCATGGAGAACCGGGTTGGCCTGAA GCCTATGATGACGATGTCATTGAGAACCGGGTTGGCCTGAA Direct Loss 0.932251772654667 0 NA NA prediction 0.864503545309334 Functional Loss - SNX17 ENSG00000115234 CDS Human protein_coding chr2:27597589 chr2:27597589 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7014 0 0 1 0 2 SNX17 chr2:27597556 3'AG 27597556 Downstream 34bp 6786 chr2 27597589 27597589 1 + G T LGG 27597589 + 27597569 27597609 41 GCCTATGATGACGATGTCATGGAGAACCGGGTTGGCCTGAA GCCTATGATGACGATGTCATTGAGAACCGGGTTGGCCTGAA Direct Loss 0.932251772654667 0 NA NA prediction 0.864503545309334 Functional Loss - SNX17 ENSG00000115234 CDS Human protein_coding chr2:27597589 chr2:27597589 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7014 0 0 1 0 2 SNX17 chr2:27597625 5'GT 27597625 Upstream 37bp 6787 chr2 61147198 61147198 1 + G C COAD 61147198 + 61147178 61147218 41 ACTTACGGCAATAAAGCAAAGAAACAAAAGACAACTCTGCT ACTTACGGCAATAAAGCAAACAAACAAAAGACAACTCTGCT Direct Loss 0.932238251662868 0 NA NA prediction 0.864476503325736 Functional Loss - REL ENSG00000162924 CDS Human protein_coding chr2:61147198 chr2:61147198 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7016 0 0 0 0 2 REL chr2:61147176 3'AG 61147176 Downstream 23bp 6788 chr2 61147198 61147198 1 + G C COAD 61147198 + 61147178 61147218 41 ACTTACGGCAATAAAGCAAAGAAACAAAAGACAACTCTGCT ACTTACGGCAATAAAGCAAACAAACAAAAGACAACTCTGCT Direct Loss 0.932238251662868 0 NA NA prediction 0.864476503325736 Functional Loss - REL ENSG00000162924 CDS Human protein_coding chr2:61147198 chr2:61147198 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7016 0 0 0 0 2 REL chr2:61147244 5'GT 61147244 Upstream 47bp 6789 chr2 86712976 86712976 1 + G A KIRC 86712976 + 86712956 86712996 41 TGGGCCCCAAGATGTATAATGCTTATGGTAAGGAGGAGATG TGGGCCCCAAGATGTATAATACTTATGGTAAGGAGGAGATG Direct Loss 0.932237251769424 0 NA NA prediction 0.864474503538847 Functional Loss - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86712976 chr2:86712976 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_7017 0 0 1 0 1 KDM3A chr2:86712982 5'GT 86712982 Upstream 7bp 6790 chr19 55670808 55670808 1 - C T rs111250144 55670808 - 55670788 55670828 41 CCCATCTGCAGGTACCTGGTGGACGTGCGGCAGGAGCAGCT CCCATCTGCAGGTACCTGGTAGACGTGCGGCAGGAGCAGCT Direct Loss 0.932231209097335 0 NA NA prediction 0.864462418194671 Functional Loss - DNAAF3 ENSG00000167646;ENSG00000267110 CDS Human other chr19:55670808 chr19:55670808 synonymous SNV . 0 21 hm7G_associated_SNPs_7020 2 0 1 0 1 DNAAF3 chr19:55670817 3'AG 55670817 Downstream 10bp 6791 chr16 20448442 20448442 1 + G A SKCM 20448442 + 20448422 20448462 41 ACAGGGGACCGAGCTCGCATGGACAAGGATGGCTACTTTTG ACAGGGGACCGAGCTCGCATAGACAAGGATGGCTACTTTTG Direct Loss 0.932227115739318 0 NA NA prediction 0.864454231478636 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448442 chr16:20448442 nonsynonymous SNV 0.976 1 21 hm7G_associated_SNPs_7021 0 0 0 0 2 ACSM5 chr16:20448374 3'AG 20448374 Downstream 69bp 6792 chr16 20448442 20448442 1 + G A SKCM 20448442 + 20448422 20448462 41 ACAGGGGACCGAGCTCGCATGGACAAGGATGGCTACTTTTG ACAGGGGACCGAGCTCGCATAGACAAGGATGGCTACTTTTG Direct Loss 0.932227115739318 0 NA NA prediction 0.864454231478636 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20448442 chr16:20448442 nonsynonymous SNV 0.976 1 21 hm7G_associated_SNPs_7021 0 0 0 0 2 ACSM5 chr16:20448501 5'GT 20448501 Upstream 60bp 6793 chr6 24523072 24523072 1 + G C CESC 24523072 + 24523052 24523092 41 AAAGCATTCGCCGAGGCCATGAAGAAGAACCTGCGCGTAGG AAAGCATTCGCCGAGGCCATCAAGAAGAACCTGCGCGTAGG Direct Loss 0.932217369918482 0 NA NA prediction 0.864434739836963 Functional Loss - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24523072 chr6:24523072 nonsynonymous SNV 0.468 0 21 hm7G_associated_SNPs_7022 0 0 1 0 2 ALDH5A1 chr6:24522995 3'AG 24522995 Downstream 78bp 6794 chr6 24523072 24523072 1 + G C CESC 24523072 + 24523052 24523092 41 AAAGCATTCGCCGAGGCCATGAAGAAGAACCTGCGCGTAGG AAAGCATTCGCCGAGGCCATCAAGAAGAACCTGCGCGTAGG Direct Loss 0.932217369918482 0 NA NA prediction 0.864434739836963 Functional Loss - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24523072 chr6:24523072 nonsynonymous SNV 0.468 0 21 hm7G_associated_SNPs_7022 0 0 1 0 2 ALDH5A1 chr6:24523153 5'GT 24523153 Upstream 82bp 6795 chrX 86888827 86888827 1 + G T LUSC 86888827 + 86888807 86888847 41 TCTAAATACTGTAGAAAGATGGGACCCTGAGGGACGACAGT TCTAAATACTGTAGAAAGATTGGACCCTGAGGGACGACAGT Direct Loss 0.93221608924099 0 NA NA prediction 0.86443217848198 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86888827 chrX:86888827 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7023 0 0 0 0 2 KLHL4 chrX:86888749 3'AG 86888749 Downstream 79bp 6796 chrX 86888827 86888827 1 + G T LUSC 86888827 + 86888807 86888847 41 TCTAAATACTGTAGAAAGATGGGACCCTGAGGGACGACAGT TCTAAATACTGTAGAAAGATTGGACCCTGAGGGACGACAGT Direct Loss 0.93221608924099 0 NA NA prediction 0.86443217848198 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86888827 chrX:86888827 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7023 0 0 0 0 2 KLHL4 chrX:86888911 5'GT 86888911 Upstream 85bp 6797 chr17 35310557 35310557 1 + G A BLCA 35310557 + 35310537 35310577 41 TCTCTAGTGTCAAAGTTTCTGAGGAAGTGGAGAAAGGAAGA TCTCTAGTGTCAAAGTTTCTAAGGAAGTGGAGAAAGGAAGA Direct Loss 0.932214348208235 0 NA NA prediction 0.864428696416471 Functional Loss - AATF ENSG00000108270 CDS Human other chr17:35310557 chr17:35310557 nonsynonymous SNV 0.977 1 21 hm7G_associated_SNPs_7025 0 0 1 1 1 AATF chr17:35310596 5'GT 35310596 Upstream 40bp 6798 chr3 136046565 136046565 1 + G A LGG 136046565 + 136046545 136046585 41 ACCGCAGAGATTGCAGTCATGGGAGCAAAGGTGAGGGCCTC ACCGCAGAGATTGCAGTCATAGGAGCAAAGGTGAGGGCCTC Direct Loss 0.932205828220409 0 NA NA prediction 0.864411656440818 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:136046565 chr3:136046565 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_7026 0 0 1 0 2 PCCB chr3:136046476 3'AG 136046476 Downstream 90bp 6799 chr3 136046565 136046565 1 + G A LGG 136046565 + 136046545 136046585 41 ACCGCAGAGATTGCAGTCATGGGAGCAAAGGTGAGGGCCTC ACCGCAGAGATTGCAGTCATAGGAGCAAAGGTGAGGGCCTC Direct Loss 0.932205828220409 0 NA NA prediction 0.864411656440818 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:136046565 chr3:136046565 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_7026 0 0 1 0 2 PCCB chr3:136046574 5'GT 136046574 Upstream 10bp 6800 chr22 38610474 38610474 1 + G A STAD 38610474 + 38610454 38610494 41 CCGCACCTGTCGGACGAGGCGCTGATGGGGCTGTCGGTGCG CCGCACCTGTCGGACGAGGCACTGATGGGGCTGTCGGTGCG Direct Loss 0.932193144835471 0 NA NA prediction 0.864386289670941 Functional Loss - MAFF ENSG00000185022 CDS Human protein_coding chr22:38610474 chr22:38610474 synonymous SNV . 0 21 hm7G_associated_SNPs_7027 0 0 0 0 1 MAFF chr22:38610427 3'AG 38610427 Downstream 48bp 6801 chr1 35250366 35250366 1 + G A SKCM 35250366 + 35250346 35250386 41 CGGCCCCCACCAGGCGCCATGGACTGGAAGACACTCCAGGC CGGCCCCCACCAGGCGCCATAGACTGGAAGACACTCCAGGC Direct Loss 0.932192373903071 0 NA NA prediction 0.864384747806142 Functional Loss - GJB3 ENSG00000188910 CDS Human antisense chr1:35250366 chr1:35250366 nonsynonymous SNV 0.986 5 21 hm7G_associated_SNPs_7028 0 0 0 0 1 GJB3 chr1:35250339 3'AG 35250339 Downstream 28bp 6802 chr7 99688744 99688744 1 + G A BLCA 99688744 + 99688724 99688764 41 GTAGACCACGTAGCCCGAATGACAGCAACAGGCAGTGGAGA GTAGACCACGTAGCCCGAATAACAGCAACAGGCAGTGGAGA Direct Loss 0.932191637396648 0 NA NA prediction 0.864383274793295 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688744 chr7:99688744 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7029 0 0 1 0 2 COPS6 chr7:99688661 3'AG 99688661 Downstream 84bp 6803 chr7 99688744 99688744 1 + G A BLCA 99688744 + 99688724 99688764 41 GTAGACCACGTAGCCCGAATGACAGCAACAGGCAGTGGAGA GTAGACCACGTAGCCCGAATAACAGCAACAGGCAGTGGAGA Direct Loss 0.932191637396648 0 NA NA prediction 0.864383274793295 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688744 chr7:99688744 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7029 0 0 1 0 2 COPS6 chr7:99688775 5'GT 99688775 Upstream 32bp 6804 chr1 153654997 153654997 1 + G T LUSC 153654997 + 153654977 153655017 41 TGACAGGATACCTGAAAATTGATAGCAGTGGCGATCGGGAA TGACAGGATACCTGAAAATTTATAGCAGTGGCGATCGGGAA Direct Loss 0.932174875010587 0 NA NA prediction 0.864349750021173 Functional Loss - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153654997 chr1:153654997 nonsynonymous SNV 0.990 5 21 hm7G_associated_SNPs_7035 0 0 0 0 1 NPR1 chr1:153654974 3'AG 153654974 Downstream 24bp 6805 chr17 38610218 38610218 1 + G A LIHC 38610218 + 38610198 38610238 41 AGCGAGCTGCACCGGGCGCTGGAGCGGCTGGCCGCTTCACA AGCGAGCTGCACCGGGCGCTAGAGCGGCTGGCCGCTTCACA Direct Loss 0.932170994590569 0 NA NA prediction 0.864341989181138 Functional Loss - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610218 chr17:38610218 synonymous SNV . 0 21 hm7G_associated_SNPs_7037 0 0 1 0 2 IGFBP4 chr17:38610180 3'AG 38610180 Downstream 39bp 6806 chr17 38610218 38610218 1 + G A LIHC 38610218 + 38610198 38610238 41 AGCGAGCTGCACCGGGCGCTGGAGCGGCTGGCCGCTTCACA AGCGAGCTGCACCGGGCGCTAGAGCGGCTGGCCGCTTCACA Direct Loss 0.932170994590569 0 NA NA prediction 0.864341989181138 Functional Loss - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610218 chr17:38610218 synonymous SNV . 0 21 hm7G_associated_SNPs_7037 0 0 1 0 2 IGFBP4 chr17:38610314 5'GT 38610314 Upstream 97bp 6807 chr1 192779534 192779534 1 + G T READ 192779534 + 192779514 192779554 41 AAGCACAGCTGTGGTCAGAAGCATTTGACGAGCTGCTAGCC AAGCACAGCTGTGGTCAGAATCATTTGACGAGCTGCTAGCC Direct Loss 0.932170203115682 0 NA NA prediction 0.864340406231365 Functional Loss - RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779534 chr1:192779534 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7038 0 0 0 0 2 RGS2 chr1:192779500 3'AG 192779500 Downstream 35bp 6808 chr1 192779534 192779534 1 + G T READ 192779534 + 192779514 192779554 41 AAGCACAGCTGTGGTCAGAAGCATTTGACGAGCTGCTAGCC AAGCACAGCTGTGGTCAGAATCATTTGACGAGCTGCTAGCC Direct Loss 0.932170203115682 0 NA NA prediction 0.864340406231365 Functional Loss - RGS2 ENSG00000116741 CDS Human protein_coding chr1:192779534 chr1:192779534 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7038 0 0 0 0 2 RGS2 chr1:192779561 5'GT 192779561 Upstream 28bp 6809 chr4 76714923 76714923 1 + G A UCEC 76714923 + 76714903 76714943 41 CACTTTCAAACTGGTGTGCTGCTGTGGCCCTTGCCCATGCG CACTTTCAAACTGGTGTGCTACTGTGGCCCTTGCCCATGCG Direct Loss 0.932167555496853 0 NA NA prediction 0.864335110993706 Functional Loss - USO1 ENSG00000138768 CDS Human protein_coding chr4:76714923 chr4:76714923 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_7040 0 0 1 0 1 USO1 chr4:76714843 3'AG 76714843 Downstream 81bp 6810 chr17 41001353 41001353 1 + G A SKCM 41001353 + 41001333 41001373 41 CTTGGCATACACATACCCCTGGAGAGTGACATGGAGAGGGC CTTGGCATACACATACCCCTAGAGAGTGACATGGAGAGGGC Direct Loss 0.93215305388253 0 NA NA prediction 0.864306107765059 Functional Loss - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001353 chr17:41001353 synonymous SNV . 0 21 hm7G_associated_SNPs_7041 0 0 1 0 1 AOC2 chr17:41001388 5'GT 41001388 Upstream 36bp 6811 chr2 135621051 135621051 1 + G A LUAD 135621051 + 135621031 135621071 41 AGCTACCCCAGGAGGTTCGTGGGTCTGGGGACGTTGCCCAT AGCTACCCCAGGAGGTTCGTAGGTCTGGGGACGTTGCCCAT Direct Loss 0.932148860675268 0 NA NA prediction 0.864297721350537 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135621051 chr2:135621051 synonymous SNV . 0 21 hm7G_associated_SNPs_7042 0 0 0 0 1 ACMSD chr2:135620965 3'AG 135620965 Downstream 87bp 6812 chr15 68122564 68122564 1 + G A BRCA 68122564 + 68122544 68122584 41 ACAATCACTCGCCCGCCGATGATTTGGAAACGAGGAAATCC ACAATCACTCGCCCGCCGATAATTTGGAAACGAGGAAATCC Direct Loss 0.932132721206578 0 NA NA prediction 0.864265442413156 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68122564 chr15:68122564 nonsynonymous SNV 0.967 2 21 hm7G_associated_SNPs_7043 0 0 0 0 2 SKOR1 chr15:68122529 3'AG 68122529 Downstream 36bp 6813 chr15 68122564 68122564 1 + G A BRCA 68122564 + 68122544 68122584 41 ACAATCACTCGCCCGCCGATGATTTGGAAACGAGGAAATCC ACAATCACTCGCCCGCCGATAATTTGGAAACGAGGAAATCC Direct Loss 0.932132721206578 0 NA NA prediction 0.864265442413156 Functional Loss - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68122564 chr15:68122564 nonsynonymous SNV 0.967 2 21 hm7G_associated_SNPs_7043 0 0 0 0 2 SKOR1 chr15:68122636 5'GT 68122636 Upstream 73bp 6814 chr19 4442293 4442293 1 + G A BRCA 4442293 + 4442273 4442313 41 CAGACACGGAGGAGGAGGAAGAGGAGGAGGGCGACTGTATG CAGACACGGAGGAGGAGGAAAAGGAGGAGGGCGACTGTATG Direct Loss 0.932127252506752 0 NA NA prediction 0.864254505013503 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442293 chr19:4442293 nonsynonymous SNV 0.987 2 21 hm7G_associated_SNPs_7044 0 0 1 0 2 CHAF1A chr19:4442242 3'AG 4442242 Downstream 52bp 6815 chr19 4442293 4442293 1 + G A BRCA 4442293 + 4442273 4442313 41 CAGACACGGAGGAGGAGGAAGAGGAGGAGGGCGACTGTATG CAGACACGGAGGAGGAGGAAAAGGAGGAGGGCGACTGTATG Direct Loss 0.932127252506752 0 NA NA prediction 0.864254505013503 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4442293 chr19:4442293 nonsynonymous SNV 0.987 2 21 hm7G_associated_SNPs_7044 0 0 1 0 2 CHAF1A chr19:4442338 5'GT 4442338 Upstream 46bp 6816 chr5 41904560 41904560 1 + G A LUAD 41904560 + 41904540 41904580 41 AGCAACTTAGCGAAGCTGCCGGTGAAGATGGTGAGGGAGCG AGCAACTTAGCGAAGCTGCCAGTGAAGATGGTGAGGGAGCG Direct Loss 0.932118286140189 0 NA NA prediction 0.864236572280378 Functional Loss - C5orf51 ENSG00000205765 CDS Human protein_coding chr5:41904560 chr5:41904560 nonsynonymous SNV 0.989 3 21 hm7G_associated_SNPs_7045 0 0 1 0 1 C5orf51 chr5:41904569 5'GT 41904569 Upstream 10bp 6817 chr3 52825804 52825804 1 + G A UCEC 52825804 + 52825784 52825824 41 TTGTCTCTGCACAGGGGTTTGCAAAAAGACTACAGCAAGGA TTGTCTCTGCACAGGGGTTTACAAAAAGACTACAGCAAGGA Direct Loss 0.932116934534133 0 NA NA prediction 0.864233869068266 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825804 chr3:52825804 synonymous SNV . 0 21 hm7G_associated_SNPs_7046 0 0 0 1 1 ITIH1 chr3:52825798 3'AG 52825798 Downstream 7bp 6818 chr12 6645892 6645892 1 + G A ESCA 6645892 + 6645872 6645912 41 CCACCCATGGCAAATTCCATGGCACCGTCAAGGCTGAGAAC CCACCCATGGCAAATTCCATAGCACCGTCAAGGCTGAGAAC Direct Loss 0.932106813082853 0 NA NA prediction 0.864213626165705 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6645892 chr12:6645892 nonsynonymous SNV 0.966 2 21 hm7G_associated_SNPs_7047 0 0 1 0 2 GAPDH chr12:6645850 3'AG 6645850 Downstream 43bp 6819 chr12 6645892 6645892 1 + G A ESCA 6645892 + 6645872 6645912 41 CCACCCATGGCAAATTCCATGGCACCGTCAAGGCTGAGAAC CCACCCATGGCAAATTCCATAGCACCGTCAAGGCTGAGAAC Direct Loss 0.932106813082853 0 NA NA prediction 0.864213626165705 Functional Loss - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6645892 chr12:6645892 nonsynonymous SNV 0.966 2 21 hm7G_associated_SNPs_7047 0 0 1 0 2 GAPDH chr12:6645956 5'GT 6645956 Upstream 65bp 6820 chr20 4705264 4705264 1 + G T SARC 4705264 + 4705244 4705284 41 TGCTCTTCAGCCACCTCTCTGCGGTCCAGACGAGGGGCATC TGCTCTTCAGCCACCTCTCTTCGGTCCAGACGAGGGGCATC Direct Loss 0.932105822632609 0 NA NA prediction 0.864211645265218 Functional Loss - PRND ENSG00000171864 CDS Human protein_coding chr20:4705264 chr20:4705264 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_7048 0 0 0 0 1 PRND chr20:4705187 3'AG 4705187 Downstream 78bp 6821 chr20 31623453 31623453 1 + G A SKCM 31623453 + 31623433 31623473 41 GATGCAGTCCTGGTGTATGTGAACAGGAAGTGGACCAACCT GATGCAGTCCTGGTGTATGTAAACAGGAAGTGGACCAACCT Direct Loss 0.932105102118847 0 NA NA prediction 0.864210204237695 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31623453 chr20:31623453 synonymous SNV . 0 21 hm7G_associated_SNPs_7049 0 0 0 0 2 BPIFB6 chr20:31623418 3'AG 31623418 Downstream 36bp 6822 chr20 31623453 31623453 1 + G A SKCM 31623453 + 31623433 31623473 41 GATGCAGTCCTGGTGTATGTGAACAGGAAGTGGACCAACCT GATGCAGTCCTGGTGTATGTAAACAGGAAGTGGACCAACCT Direct Loss 0.932105102118847 0 NA NA prediction 0.864210204237695 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31623453 chr20:31623453 synonymous SNV . 0 21 hm7G_associated_SNPs_7049 0 0 0 0 2 BPIFB6 chr20:31623478 5'GT 31623478 Upstream 26bp 6823 chr19 52857030 52857030 1 + G A HNSC 52857030 + 52857010 52857050 41 GCTTTATACAGGGACGTGATGTTGGAGAACTACAGGAACCT GCTTTATACAGGGACGTGATATTGGAGAACTACAGGAACCT Direct Loss 0.9320998415405 0 NA NA prediction 0.864199683081001 Functional Loss - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52857030 chr19:52857030 nonsynonymous SNV 0.228 1 21 hm7G_associated_SNPs_7050 0 0 0 0 2 ZNF610 chr19:52856935 3'AG 52856935 Downstream 96bp 6824 chr19 52857030 52857030 1 + G A HNSC 52857030 + 52857010 52857050 41 GCTTTATACAGGGACGTGATGTTGGAGAACTACAGGAACCT GCTTTATACAGGGACGTGATATTGGAGAACTACAGGAACCT Direct Loss 0.9320998415405 0 NA NA prediction 0.864199683081001 Functional Loss - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52857030 chr19:52857030 nonsynonymous SNV 0.228 1 21 hm7G_associated_SNPs_7050 0 0 0 0 2 ZNF610 chr19:52857061 5'GT 52857061 Upstream 32bp 6825 chr13 108955874 108955874 1 + G T COAD 108955874 + 108955854 108955894 41 AGGTCCATGTCTTTGGGGATGAATTGAGTCTGGTGACTTTG AGGTCCATGTCTTTGGGGATTAATTGAGTCTGGTGACTTTG Direct Loss 0.932098126464396 0 NA NA prediction 0.864196252928792 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108955874 chr13:108955874 stopgain 0.998 1 21 hm7G_associated_SNPs_7052 0 0 1 0 2 TNFSF13B chr13:108955802 3'AG 108955802 Downstream 73bp 6826 chr13 108955874 108955874 1 + G T COAD 108955874 + 108955854 108955894 41 AGGTCCATGTCTTTGGGGATGAATTGAGTCTGGTGACTTTG AGGTCCATGTCTTTGGGGATTAATTGAGTCTGGTGACTTTG Direct Loss 0.932098126464396 0 NA NA prediction 0.864196252928792 Functional Loss - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108955874 chr13:108955874 stopgain 0.998 1 21 hm7G_associated_SNPs_7052 0 0 1 0 2 TNFSF13B chr13:108955952 5'GT 108955952 Upstream 79bp 6827 chr17 18814458 18814458 1 + G A HNSC 18814458 + 18814438 18814478 41 CTGCGCCTGGGAATTGCAGTGATTCATGGAGAGGCGCAGGA CTGCGCCTGGGAATTGCAGTAATTCATGGAGAGGCGCAGGA Direct Loss 0.93207788140509 0 NA NA prediction 0.86415576281018 Functional Loss - PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18814458 chr17:18814458 synonymous SNV . 0 21 hm7G_associated_SNPs_7055 0 0 1 0 1 PRPSAP2 chr17:18814416 3'AG 18814416 Downstream 43bp 6828 chr9 113538076 113538076 1 + G A LIHC 113538076 + 113538056 113538096 41 ATACTATTTTAGAGAGTACTGCTTGGCAGTAAAGGAGCTCT ATACTATTTTAGAGAGTACTACTTGGCAGTAAAGGAGCTCT Direct Loss 0.932054787362667 0 NA NA prediction 0.864109574725334 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113538076 chr9:113538076 nonsynonymous SNV 0.986 5 21 hm7G_associated_SNPs_7059 0 0 0 0 1 MUSK chr9:113538068 3'AG 113538068 Downstream 9bp 6829 chr2 95843287 95843287 1 + G T LUAD 95843287 + 95843267 95843307 41 GATGAAGAGTGGAGTCGTCTGGTCCCCATACAGAGGGACCT GATGAAGAGTGGAGTCGTCTTGTCCCCATACAGAGGGACCT Direct Loss 0.932022371954006 0 NA NA prediction 0.864044743908012 Functional Loss - ZNF2 ENSG00000163067 CDS Human other chr2:95843287 chr2:95843287 synonymous SNV . 0 21 hm7G_associated_SNPs_7062 0 0 1 0 2 ZNF2 chr2:95843228 3'AG 95843228 Downstream 60bp 6830 chr2 95843287 95843287 1 + G T LUAD 95843287 + 95843267 95843307 41 GATGAAGAGTGGAGTCGTCTGGTCCCCATACAGAGGGACCT GATGAAGAGTGGAGTCGTCTTGTCCCCATACAGAGGGACCT Direct Loss 0.932022371954006 0 NA NA prediction 0.864044743908012 Functional Loss - ZNF2 ENSG00000163067 CDS Human other chr2:95843287 chr2:95843287 synonymous SNV . 0 21 hm7G_associated_SNPs_7062 0 0 1 0 2 ZNF2 chr2:95843354 5'GT 95843354 Upstream 68bp 6831 chr19 6741257 6741257 1 + G T SKCM 6741257 + 6741237 6741277 41 AGCCTGGTGAAAAAATATCTGCCCAAGAGACCTGCCAAGGA AGCCTGGTGAAAAAATATCTTCCCAAGAGACCTGCCAAGGA Direct Loss 0.932019961423206 0 NA NA prediction 0.864039922846411 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6741257 chr19:6741257 synonymous SNV . 0 21 hm7G_associated_SNPs_7064 0 0 1 1 2 TRIP10 chr19:6741236 3'AG 6741236 Downstream 22bp 6832 chr19 6741257 6741257 1 + G T SKCM 6741257 + 6741237 6741277 41 AGCCTGGTGAAAAAATATCTGCCCAAGAGACCTGCCAAGGA AGCCTGGTGAAAAAATATCTTCCCAAGAGACCTGCCAAGGA Direct Loss 0.932019961423206 0 NA NA prediction 0.864039922846411 Functional Loss - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6741257 chr19:6741257 synonymous SNV . 0 21 hm7G_associated_SNPs_7064 0 0 1 1 2 TRIP10 chr19:6741292 5'GT 6741292 Upstream 36bp 6833 chr1 160164819 160164819 1 + G A LUAD 160164819 + 160164799 160164839 41 CAGGTCCTAGAGGACCCTGTGGAATTGATTGAAGGTGAACG CAGGTCCTAGAGGACCCTGTAGAATTGATTGAAGGTGAACG Direct Loss 0.932018956722865 0 NA NA prediction 0.864037913445731 Functional Loss - CASQ1 ENSG00000143318 CDS Human protein_coding chr1:160164819 chr1:160164819 synonymous SNV . 0 21 hm7G_associated_SNPs_7065 0 0 0 0 1 CASQ1 chr1:160164802 3'AG 160164802 Downstream 18bp 6834 chr3 87302931 87302931 1 + G A CESC 87302931 + 87302911 87302951 41 CAAAGGCTACAATCTCAGATGAAGAGATTGAACGGCAACTC CAAAGGCTACAATCTCAGATAAAGAGATTGAACGGCAACTC Direct Loss 0.932018543719074 0 NA NA prediction 0.864037087438148 Functional Loss - CHMP2B ENSG00000083937 CDS Human protein_coding chr3:87302931 chr3:87302931 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_7066 0 0 1 0 1 CHMP2B chr3:87302862 3'AG 87302862 Downstream 70bp 6835 chr1 45243773 45243773 1 + G A HNSC 45243773 + 45243753 45243793 41 AAAATCAGCAGTCTCCTGGAGGAGCAGTTCCAGCAGGGCAA AAAATCAGCAGTCTCCTGGAAGAGCAGTTCCAGCAGGGCAA Direct Loss 0.932017806640324 0 NA NA prediction 0.864035613280649 Functional Loss - RPS8 ENSG00000142937 CDS Human protein_coding chr1:45243773 chr1:45243773 synonymous SNV . 0 21 hm7G_associated_SNPs_7067 0 0 1 0 1 RPS8 chr1:45243801 5'GT 45243801 Upstream 29bp 6836 chr2 79349191 79349191 1 + G A LUAD 79349191 + 79349171 79349211 41 GGTGCCTTTGTGGCCTCACTGATTAAGGAGAGTGGCACTGA GGTGCCTTTGTGGCCTCACTAATTAAGGAGAGTGGCACTGA Direct Loss 0.932016368301577 0 NA NA prediction 0.864032736603154 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349191 chr2:79349191 synonymous SNV . 0 21 hm7G_associated_SNPs_7068 0 0 0 0 2 REG1A chr2:79349114 3'AG 79349114 Downstream 78bp 6837 chr2 79349191 79349191 1 + G A LUAD 79349191 + 79349171 79349211 41 GGTGCCTTTGTGGCCTCACTGATTAAGGAGAGTGGCACTGA GGTGCCTTTGTGGCCTCACTAATTAAGGAGAGTGGCACTGA Direct Loss 0.932016368301577 0 NA NA prediction 0.864032736603154 Functional Loss - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349191 chr2:79349191 synonymous SNV . 0 21 hm7G_associated_SNPs_7068 0 0 0 0 2 REG1A chr2:79349251 5'GT 79349251 Upstream 61bp 6838 chr6 139363948 139363948 1 + G T STAD 139363948 + 139363928 139363968 41 CATTGGTAGGAACTCTTAAAGCTGCAAAACGAAGGAAGATT CATTGGTAGGAACTCTTAAATCTGCAAAACGAAGGAAGATT Direct Loss 0.932012660631177 0 NA NA prediction 0.864025321262354 Functional Loss - ABRACL ENSG00000146386 CDS Human protein_coding chr6:139363948 chr6:139363948 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_7069 0 0 1 0 1 ABRACL chr6:139363856 3'AG 139363856 Downstream 93bp 6839 chr8 91940518 91940518 1 + G T STAD 91940518 + 91940498 91940538 41 CAGAAATTAATTGATAGACTGGAAAAGAAGGTAGGTGCTTT CAGAAATTAATTGATAGACTTGAAAAGAAGGTAGGTGCTTT Direct Loss 0.932011810887314 0 NA NA prediction 0.864023621774628 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91940518 chr8:91940518 synonymous SNV . 0 21 hm7G_associated_SNPs_7070 0 0 0 0 2 NECAB1 chr8:91940451 3'AG 91940451 Downstream 68bp 6840 chr8 91940518 91940518 1 + G T STAD 91940518 + 91940498 91940538 41 CAGAAATTAATTGATAGACTGGAAAAGAAGGTAGGTGCTTT CAGAAATTAATTGATAGACTTGAAAAGAAGGTAGGTGCTTT Direct Loss 0.932011810887314 0 NA NA prediction 0.864023621774628 Functional Loss - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91940518 chr8:91940518 synonymous SNV . 0 21 hm7G_associated_SNPs_7070 0 0 0 0 2 NECAB1 chr8:91940527 5'GT 91940527 Upstream 10bp 6841 chrX 153628919 153628919 1 + G C BRCA 153628919 + 153628899 153628939 41 CTGCAGAACAAGGAGCATGTGATTGAGGCCCTGCGCAGGGC CTGCAGAACAAGGAGCATGTCATTGAGGCCCTGCGCAGGGC Direct Loss 0.932011244555158 0 NA NA prediction 0.864022489110316 Functional Loss - RPL10 ENSG00000147403 CDS Human protein_coding chrX:153628919 chrX:153628919 synonymous SNV . 0 21 hm7G_associated_SNPs_7071 0 0 1 0 1 RPL10 chrX:153628967 5'GT 153628967 Upstream 49bp 6842 chr17 4635153 4635153 1 + G A COAD 4635153 + 4635133 4635173 41 GCGGCCTTCACCGCTTCAGTGCAACACGTGGAGGCGGAGCT GCGGCCTTCACCGCTTCAGTACAACACGTGGAGGCGGAGCT Direct Loss 0.932006798850386 0 NA NA prediction 0.864013597700772 Functional Loss - MED11 ENSG00000161920 CDS Human protein_coding chr17:4635153 chr17:4635153 synonymous SNV . 0 21 hm7G_associated_SNPs_7072 0 0 1 0 2 MED11 chr17:4635071 3'AG 4635071 Downstream 83bp 6843 chr17 4635153 4635153 1 + G A COAD 4635153 + 4635133 4635173 41 GCGGCCTTCACCGCTTCAGTGCAACACGTGGAGGCGGAGCT GCGGCCTTCACCGCTTCAGTACAACACGTGGAGGCGGAGCT Direct Loss 0.932006798850386 0 NA NA prediction 0.864013597700772 Functional Loss - MED11 ENSG00000161920 CDS Human protein_coding chr17:4635153 chr17:4635153 synonymous SNV . 0 21 hm7G_associated_SNPs_7072 0 0 1 0 2 MED11 chr17:4635201 5'GT 4635201 Upstream 49bp 6844 chrX 48385382 48385382 1 + G T UCEC 48385382 + 48385362 48385402 41 TCTTCTTTTCTTCAGGGAAAGAGTATGCCAAGGGAGACAGC TCTTCTTTTCTTCAGGGAAATAGTATGCCAAGGGAGACAGC Direct Loss 0.932005317104967 0 NA NA prediction 0.864010634209935 Functional Loss - EBP ENSG00000147155 CDS Human protein_coding chrX:48385382 chrX:48385382 stopgain 0.996 1 21 hm7G_associated_SNPs_7073 0 0 1 0 2 EBP chrX:48385377 3'AG 48385377 Downstream 6bp 6845 chrX 48385382 48385382 1 + G T UCEC 48385382 + 48385362 48385402 41 TCTTCTTTTCTTCAGGGAAAGAGTATGCCAAGGGAGACAGC TCTTCTTTTCTTCAGGGAAATAGTATGCCAAGGGAGACAGC Direct Loss 0.932005317104967 0 NA NA prediction 0.864010634209935 Functional Loss - EBP ENSG00000147155 CDS Human protein_coding chrX:48385382 chrX:48385382 stopgain 0.996 1 21 hm7G_associated_SNPs_7073 0 0 1 0 2 EBP chrX:48385413 5'GT 48385413 Upstream 32bp 6846 chr7 5939963 5939963 1 + G T UCEC 5939963 + 5939943 5939983 41 CAAATGAGGTAGAAAAGAATGAGAAGATTAGAAATGTCGGA CAAATGAGGTAGAAAAGAATTAGAAGATTAGAAATGTCGGA Direct Loss 0.931999444803441 0 NA NA prediction 0.863998889606882 Functional Loss - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5939963 chr7:5939963 stopgain 0.998 1 21 hm7G_associated_SNPs_7074 0 0 0 0 2 CCZ1 chr7:5939915 3'AG 5939915 Downstream 49bp 6847 chr7 5939963 5939963 1 + G T UCEC 5939963 + 5939943 5939983 41 CAAATGAGGTAGAAAAGAATGAGAAGATTAGAAATGTCGGA CAAATGAGGTAGAAAAGAATTAGAAGATTAGAAATGTCGGA Direct Loss 0.931999444803441 0 NA NA prediction 0.863998889606882 Functional Loss - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5939963 chr7:5939963 stopgain 0.998 1 21 hm7G_associated_SNPs_7074 0 0 0 0 2 CCZ1 chr7:5940012 5'GT 5940012 Upstream 50bp 6848 chr14 58827643 58827643 1 + G A CESC 58827643 + 58827623 58827663 41 AAGAAGATAGTGAAAAGGACGAAAAGAGAGATGAGGAGAGG AAGAAGATAGTGAAAAGGACAAAAAGAGAGATGAGGAGAGG Direct Loss 0.931992721440545 0 NA NA prediction 0.863985442881091 Functional Loss - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58827643 chr14:58827643 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_7078 0 0 1 0 1 ARID4A chr14:58827619 3'AG 58827619 Downstream 25bp 6849 chr11 34489885 34489885 1 + G A STAD 34489885 + 34489865 34489905 41 GAGGAACAGAGGAAACGTCTGTGTGAGAACATTGCCGGCCA GAGGAACAGAGGAAACGTCTATGTGAGAACATTGCCGGCCA Direct Loss 0.931990613068715 0 NA NA prediction 0.86398122613743 Functional Loss - CAT ENSG00000121691 CDS Human protein_coding chr11:34489885 chr11:34489885 synonymous SNV . 0 21 hm7G_associated_SNPs_7080 0 0 1 0 2 CAT chr11:34489835 3'AG 34489835 Downstream 51bp 6850 chr11 34489885 34489885 1 + G A STAD 34489885 + 34489865 34489905 41 GAGGAACAGAGGAAACGTCTGTGTGAGAACATTGCCGGCCA GAGGAACAGAGGAAACGTCTATGTGAGAACATTGCCGGCCA Direct Loss 0.931990613068715 0 NA NA prediction 0.86398122613743 Functional Loss - CAT ENSG00000121691 CDS Human protein_coding chr11:34489885 chr11:34489885 synonymous SNV . 0 21 hm7G_associated_SNPs_7080 0 0 1 0 2 CAT chr11:34489942 5'GT 34489942 Upstream 58bp 6851 chr17 8349084 8349084 1 + G A SKCM 8349084 + 8349064 8349104 41 AGGAAGGAAGCAGAGAATTAGAAGCAGAGTTGGAGGCACAA AGGAAGGAAGCAGAGAATTAAAAGCAGAGTTGGAGGCACAA Direct Loss 0.931976614314379 0 NA NA prediction 0.863953228628758 Functional Loss - NDEL1 ENSG00000166579 CDS Human protein_coding chr17:8349084 chr17:8349084 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7082 0 0 1 0 2 NDEL1 chr17:8349029 3'AG 8349029 Downstream 56bp 6852 chr17 8349084 8349084 1 + G A SKCM 8349084 + 8349064 8349104 41 AGGAAGGAAGCAGAGAATTAGAAGCAGAGTTGGAGGCACAA AGGAAGGAAGCAGAGAATTAAAAGCAGAGTTGGAGGCACAA Direct Loss 0.931976614314379 0 NA NA prediction 0.863953228628758 Functional Loss - NDEL1 ENSG00000166579 CDS Human protein_coding chr17:8349084 chr17:8349084 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7082 0 0 1 0 2 NDEL1 chr17:8349182 5'GT 8349182 Upstream 99bp 6853 chr12 98995011 98995011 1 + G T COAD 98995011 + 98994991 98995031 41 TGGTATCTGTGTTGAATAAAGAAAAAGGTAGCAGTGCTTCT TGGTATCTGTGTTGAATAAATAAAAAGGTAGCAGTGCTTCT Direct Loss 0.931972684650051 0 NA NA prediction 0.863945369300103 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98995011 chr12:98995011 stopgain 1.000 1 21 hm7G_associated_SNPs_7083 0 0 1 0 2 SLC25A3 chr12:98994949 3'AG 98994949 Downstream 63bp 6854 chr12 98995011 98995011 1 + G T COAD 98995011 + 98994991 98995031 41 TGGTATCTGTGTTGAATAAAGAAAAAGGTAGCAGTGCTTCT TGGTATCTGTGTTGAATAAATAAAAAGGTAGCAGTGCTTCT Direct Loss 0.931972684650051 0 NA NA prediction 0.863945369300103 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98995011 chr12:98995011 stopgain 1.000 1 21 hm7G_associated_SNPs_7083 0 0 1 0 2 SLC25A3 chr12:98995059 5'GT 98995059 Upstream 49bp 6855 chr11 85988962 85988962 1 + G T LUAD 85988962 + 85988942 85988982 41 AAAAATATGTTTATACAGATGCTTGCATTGGGCAATCAAGT AAAAATATGTTTATACAGATTCTTGCATTGGGCAATCAAGT Direct Loss 0.931971657126956 0 NA NA prediction 0.863943314253911 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85988962 chr11:85988962 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7084 0 0 1 0 2 EED chr11:85988960 3'AG 85988960 Downstream 3bp 6856 chr11 85988962 85988962 1 + G T LUAD 85988962 + 85988942 85988982 41 AAAAATATGTTTATACAGATGCTTGCATTGGGCAATCAAGT AAAAATATGTTTATACAGATTCTTGCATTGGGCAATCAAGT Direct Loss 0.931971657126956 0 NA NA prediction 0.863943314253911 Functional Loss - EED ENSG00000074266 CDS Human protein_coding chr11:85988962 chr11:85988962 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7084 0 0 1 0 2 EED chr11:85989033 5'GT 85989033 Upstream 72bp 6857 chr1 178489821 178489821 1 + G A UCEC 178489821 + 178489801 178489841 41 CCCCCAGTCCCCTTAGAAGAGCACCAAAGGAGCAGCAGGAA CCCCCAGTCCCCTTAGAAGAACACCAAAGGAGCAGCAGGAA Direct Loss 0.931969625577173 0 NA NA prediction 0.863939251154346 Functional Loss - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178489821 chr1:178489821 nonsynonymous SNV 0.003 0 21 hm7G_associated_SNPs_7085 0 0 0 0 1 TEX35 chr1:178489808 3'AG 178489808 Downstream 14bp 6858 chr12 51445984 51445984 1 + G C BLCA 51445984 + 51445964 51446004 41 TACCGGGAGATGGAGCATTTGAGACAGGTATGGGCCAGGGG TACCGGGAGATGGAGCATTTCAGACAGGTATGGGCCAGGGG Direct Loss 0.931966829219432 0 NA NA prediction 0.863933658438863 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51445984 chr12:51445984 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_7087 0 0 1 0 2 LETMD1 chr12:51445990 5'GT 51445990 Upstream 7bp 6859 chr12 51445984 51445984 1 + G C BLCA 51445984 + 51445964 51446004 41 TACCGGGAGATGGAGCATTTGAGACAGGTATGGGCCAGGGG TACCGGGAGATGGAGCATTTCAGACAGGTATGGGCCAGGGG Direct Loss 0.931966829219432 0 NA NA prediction 0.863933658438863 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51445984 chr12:51445984 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_7087 0 0 1 0 2 LETMD1 chr12:51446029 5'GT 51446029 Upstream 46bp 6860 chr9 77611470 77611470 1 - C A SKCM 77611470 - 77611450 77611490 41 TTTTTCTTCATTAGATACCTGGGACTGTATTGCTACCTGTT TTTTTCTTCATTAGATACCTTGGACTGTATTGCTACCTGTT Direct Loss 0.931963539736316 0 NA NA prediction 0.863927079472631 Functional Loss - CARNMT1 ENSG00000156017 CDS Human protein_coding chr9:77611470 chr9:77611470 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7088 0 0 1 0 1 CARNMT1 chr9:77611476 3'AG 77611476 Downstream 7bp 6861 chr10 103361091 103361091 1 + G T GBM 103361091 + 103361071 103361111 41 ATTGTCAGAACAACCAACAAGAAGTGAGTAGCGTGGAAGGC ATTGTCAGAACAACCAACAATAAGTGAGTAGCGTGGAAGGC Direct Loss 0.931963337953155 0 NA NA prediction 0.863926675906311 Functional Loss - DPCD ENSG00000166171 CDS Human protein_coding chr10:103361091 chr10:103361091 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_7089 0 0 0 0 1 DPCD chr10:103361093 5'GT 103361093 Upstream 3bp 6862 chr7 99689334 99689334 1 + G T UCEC 99689334 + 99689314 99689354 41 ACCAAAACGTGCAACACCATGAACCAGTTTGTGAACAAGTT ACCAAAACGTGCAACACCATTAACCAGTTTGTGAACAAGTT Direct Loss 0.931960762572713 0 NA NA prediction 0.863921525145426 Functional Loss - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99689334 chr7:99689334 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7090 0 0 1 0 1 COPS6 chr7:99689272 3'AG 99689272 Downstream 63bp 6863 chr12 56527950 56527950 1 + G A CESC 56527950 + 56527930 56527970 41 CAACTGTCAATTCAGGATGTGACTCAGGAGAGCAAGGTGAG CAACTGTCAATTCAGGATGTAACTCAGGAGAGCAAGGTGAG Direct Loss 0.931959530277969 0 NA NA prediction 0.863919060555938 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527950 chr12:56527950 synonymous SNV . 0 21 hm7G_associated_SNPs_7091 0 0 1 0 3 ESYT1 chr12:56527864 3'AG 56527864 Downstream 87bp 6864 chr12 56527950 56527950 1 + G A CESC 56527950 + 56527930 56527970 41 CAACTGTCAATTCAGGATGTGACTCAGGAGAGCAAGGTGAG CAACTGTCAATTCAGGATGTAACTCAGGAGAGCAAGGTGAG Direct Loss 0.931959530277969 0 NA NA prediction 0.863919060555938 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527950 chr12:56527950 synonymous SNV . 0 21 hm7G_associated_SNPs_7091 0 0 1 0 3 ESYT1 chr12:56527894 3'AG 56527894 Downstream 57bp 6865 chr12 56527950 56527950 1 + G A CESC 56527950 + 56527930 56527970 41 CAACTGTCAATTCAGGATGTGACTCAGGAGAGCAAGGTGAG CAACTGTCAATTCAGGATGTAACTCAGGAGAGCAAGGTGAG Direct Loss 0.931959530277969 0 NA NA prediction 0.863919060555938 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527950 chr12:56527950 synonymous SNV . 0 21 hm7G_associated_SNPs_7091 0 0 1 0 3 ESYT1 chr12:56527965 5'GT 56527965 Upstream 16bp 6866 chrX 1742187 1742187 1 + G A SKCM 1742187 + 1742167 1742207 41 TCCCTGAAGCTGCTGAAAGTGGAGACGAGGGGAGGAAAAGG TCCCTGAAGCTGCTGAAAGTAGAGACGAGGGGAGGAAAAGG Direct Loss 0.93194617613455 0 NA NA prediction 0.8638923522691 Functional Loss - ASMT ENSG00000196433 CDS Human protein_coding chrX:1742187 chrX:1742187 synonymous SNV . 0 21 hm7G_associated_SNPs_7093 0 0 0 0 1 ASMT chrX:1742206 5'GT 1742206 Upstream 20bp 6867 chr1 92518119 92518119 1 + G A STAD 92518119 + 92518099 92518139 41 TGGCATTGGAAGAAAAGGATGCCAATTAACAACAGAGGATC TGGCATTGGAAGAAAAGGATACCAATTAACAACAGAGGATC Direct Loss 0.931944030240311 0 NA NA prediction 0.863888060480622 Functional Loss - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92518119 chr1:92518119 nonsynonymous SNV 0.581 1 21 hm7G_associated_SNPs_7094 0 0 0 0 2 EPHX4 chr1:92518067 3'AG 92518067 Downstream 53bp 6868 chr1 92518119 92518119 1 + G A STAD 92518119 + 92518099 92518139 41 TGGCATTGGAAGAAAAGGATGCCAATTAACAACAGAGGATC TGGCATTGGAAGAAAAGGATACCAATTAACAACAGAGGATC Direct Loss 0.931944030240311 0 NA NA prediction 0.863888060480622 Functional Loss - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92518119 chr1:92518119 nonsynonymous SNV 0.581 1 21 hm7G_associated_SNPs_7094 0 0 0 0 2 EPHX4 chr1:92518215 5'GT 92518215 Upstream 97bp 6869 chr2 233245400 233245400 1 + G A SKCM 233245400 + 233245380 233245420 41 ACACTGGACCCCTCCCTGATGGAGATGACAGAGGCTGCCCT ACACTGGACCCCTCCCTGATAGAGATGACAGAGGCTGCCCT Direct Loss 0.931940492686063 0 NA NA prediction 0.863880985372126 Functional Loss - ALPP ENSG00000163283 CDS Human protein_coding chr2:233245400 chr2:233245400 nonsynonymous SNV 0.132 2 21 hm7G_associated_SNPs_7095 0 0 0 0 1 ALPP chr2:233245333 3'AG 233245333 Downstream 68bp 6870 chr15 73029105 73029105 1 + G T SARC 73029105 + 73029085 73029125 41 TTCCTTTGTGGACACAAGATGGTGGAGATGGCTCAGAAGTT TTCCTTTGTGGACACAAGATTGTGGAGATGGCTCAGAAGTT Direct Loss 0.931940223977491 0 NA NA prediction 0.863880447954981 Functional Loss - BBS4 ENSG00000140463 CDS Human protein_coding chr15:73029105 chr15:73029105 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_7096 0 0 1 0 1 BBS4 chr15:73029103 3'AG 73029103 Downstream 3bp 6871 chr11 74911432 74911432 1 + G A SKCM 74911432 + 74911412 74911452 41 CTCCTTCATGCTCATCCTAAGGTGAAGGTGGGGGTGGGGCA CTCCTTCATGCTCATCCTAAAGTGAAGGTGGGGGTGGGGCA Direct Loss 0.931936317723216 0 NA NA prediction 0.863872635446431 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74911432 chr11:74911432 nonsynonymous SNV 0.951 4 21 hm7G_associated_SNPs_7099 0 0 1 0 1 SLCO2B1 chr11:74911432 5'GT 74911432 Upstream 1bp 6872 chr1 28600590 28600590 1 + G A LUAD 28600590 + 28600570 28600610 41 TCCACACCCAGACATGCTGTGCTTTGTGGAAGACCCTACTT TCCACACCCAGACATGCTGTACTTTGTGGAAGACCCTACTT Direct Loss 0.931923532940945 0 NA NA prediction 0.863847065881891 Functional Loss - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600590 chr1:28600590 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7101 0 0 1 0 2 SESN2 chr1:28600551 3'AG 28600551 Downstream 40bp 6873 chr1 28600590 28600590 1 + G A LUAD 28600590 + 28600570 28600610 41 TCCACACCCAGACATGCTGTGCTTTGTGGAAGACCCTACTT TCCACACCCAGACATGCTGTACTTTGTGGAAGACCCTACTT Direct Loss 0.931923532940945 0 NA NA prediction 0.863847065881891 Functional Loss - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600590 chr1:28600590 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7101 0 0 1 0 2 SESN2 chr1:28600669 5'GT 28600669 Upstream 80bp 6874 chr1 3683137 3683137 1 + G C rs139337972 3683137 + 3683117 3683157 41 GATAAGAAACACCAAGAGATGATGGGGCTCATTGAAAAGGA GATAAGAAACACCAAGAGATCATGGGGCTCATTGAAAAGGA Direct Loss 0.931921695376221 0 NA NA prediction 0.863843390752442 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3683137 chr1:3683137 nonsynonymous SNV 0.966 0 21 hm7G_associated_SNPs_7102 0 0 0 0 2 CCDC27 chr1:3683099 3'AG 3683099 Downstream 39bp 6875 chr1 3683137 3683137 1 + G C rs139337972 3683137 + 3683117 3683157 41 GATAAGAAACACCAAGAGATGATGGGGCTCATTGAAAAGGA GATAAGAAACACCAAGAGATCATGGGGCTCATTGAAAAGGA Direct Loss 0.931921695376221 0 NA NA prediction 0.863843390752442 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3683137 chr1:3683137 nonsynonymous SNV 0.966 0 21 hm7G_associated_SNPs_7102 0 0 0 0 2 CCDC27 chr1:3683176 5'GT 3683176 Upstream 40bp 6876 chr17 18682422 18682422 1 + G A SKCM 18682422 + 18682402 18682442 41 GAGTTCGTGCTGTTGACCGTGAAGGAGGAGAAGGAGCACCA GAGTTCGTGCTGTTGACCGTAAAGGAGGAGAAGGAGCACCA Direct Loss 0.931895188422309 0 NA NA prediction 0.863790376844618 Functional Loss - FBXW10 ENSG00000171931 CDS Human protein_coding chr17:18682422 chr17:18682422 synonymous SNV . 0 21 hm7G_associated_SNPs_7105 0 0 0 0 1 FBXW10 chr17:18682392 3'AG 18682392 Downstream 31bp 6877 chr2 73447191 73447191 1 + G T SARC 73447191 + 73447171 73447211 41 ACCGTCAGCCTGTGACCACTGCCTTAGGGCACTAGAGAAGG ACCGTCAGCCTGTGACCACTTCCTTAGGGCACTAGAGAAGG Direct Loss 0.931892409500321 0 NA NA prediction 0.863784819000642 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73447191 chr2:73447191 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7106 0 0 1 0 1 SMYD5 chr2:73447179 3'AG 73447179 Downstream 13bp 6878 chr19 3738615 3738615 1 + G A LUAD 3738615 + 3738595 3738635 41 GTGCAGTTCCTGCTGGGGCTGCCACCAGGCGAGGAGATGGA GTGCAGTTCCTGCTGGGGCTACCACCAGGCGAGGAGATGGA Direct Loss 0.931889421642367 0 NA NA prediction 0.863778843284733 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3738615 chr19:3738615 synonymous SNV . 0 21 hm7G_associated_SNPs_7107 0 0 0 0 2 TJP3 chr19:3738553 3'AG 3738553 Downstream 63bp 6879 chr19 3738615 3738615 1 + G A LUAD 3738615 + 3738595 3738635 41 GTGCAGTTCCTGCTGGGGCTGCCACCAGGCGAGGAGATGGA GTGCAGTTCCTGCTGGGGCTACCACCAGGCGAGGAGATGGA Direct Loss 0.931889421642367 0 NA NA prediction 0.863778843284733 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3738615 chr19:3738615 synonymous SNV . 0 21 hm7G_associated_SNPs_7107 0 0 0 0 2 TJP3 chr19:3738661 5'GT 3738661 Upstream 47bp 6880 chr14 103804693 103804693 1 + G T READ 103804693 + 103804673 103804713 41 ACAGTGGTACAGGAAAGAAAGAAAAAGAAAAGAAAAACAGA ACAGTGGTACAGGAAAGAAATAAAAAGAAAAGAAAAACAGA Direct Loss 0.931884590033292 0 NA NA prediction 0.863769180066585 Functional Loss - EIF5 ENSG00000100664 CDS Human protein_coding chr14:103804693 chr14:103804693 stopgain 1.000 1 21 hm7G_associated_SNPs_7108 0 0 1 0 1 EIF5 chr14:103804664 3'AG 103804664 Downstream 30bp 6881 chr4 141456971 141456971 1 + G C BLCA 141456971 + 141456951 141456991 41 AGGAAAAGAATATTAACCCTGAGAAGGATGCCAGGTGTGCG AGGAAAAGAATATTAACCCTCAGAAGGATGCCAGGTGTGCG Direct Loss 0.93188418701115 0 NA NA prediction 0.863768374022299 Functional Loss - ELMOD2 ENSG00000179387 CDS Human protein_coding chr4:141456971 chr4:141456971 nonsynonymous SNV 0.907 1 21 hm7G_associated_SNPs_7109 0 0 1 0 2 ELMOD2 chr4:141456887 3'AG 141456887 Downstream 85bp 6882 chr4 141456971 141456971 1 + G C BLCA 141456971 + 141456951 141456991 41 AGGAAAAGAATATTAACCCTGAGAAGGATGCCAGGTGTGCG AGGAAAAGAATATTAACCCTCAGAAGGATGCCAGGTGTGCG Direct Loss 0.93188418701115 0 NA NA prediction 0.863768374022299 Functional Loss - ELMOD2 ENSG00000179387 CDS Human protein_coding chr4:141456971 chr4:141456971 nonsynonymous SNV 0.907 1 21 hm7G_associated_SNPs_7109 0 0 1 0 2 ELMOD2 chr4:141456984 5'GT 141456984 Upstream 14bp 6883 chr16 72057420 72057420 1 + G A UCEC 72057420 + 72057400 72057440 41 GTGTGAGCAGCGGGCAGGACGCGCTGGAGAAGATCCGGGCA GTGTGAGCAGCGGGCAGGACACGCTGGAGAAGATCCGGGCA Direct Loss 0.931878695404135 0 NA NA prediction 0.863757390808271 Functional Loss - DHODH ENSG00000102967 CDS Human protein_coding chr16:72057420 chr16:72057420 nonsynonymous SNV 0.985 5 21 hm7G_associated_SNPs_7110 0 0 0 0 1 DHODH chr16:72057373 3'AG 72057373 Downstream 48bp 6884 chr12 112230500 112230500 1 + G A LUAD 112230500 + 112230480 112230520 41 TCGTGCAGGAGGACATCTATGATGAGTTTGTGGAGCGGAGC TCGTGCAGGAGGACATCTATAATGAGTTTGTGGAGCGGAGC Direct Loss 0.931876939785301 0 NA NA prediction 0.863753879570603 Functional Loss - ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112230500 chr12:112230500 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_7112 0 0 1 0 2 ALDH2 chr12:112230402 3'AG 112230402 Downstream 99bp 6885 chr12 112230500 112230500 1 + G A LUAD 112230500 + 112230480 112230520 41 TCGTGCAGGAGGACATCTATGATGAGTTTGTGGAGCGGAGC TCGTGCAGGAGGACATCTATAATGAGTTTGTGGAGCGGAGC Direct Loss 0.931876939785301 0 NA NA prediction 0.863753879570603 Functional Loss - ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112230500 chr12:112230500 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_7112 0 0 1 0 2 ALDH2 chr12:112230586 5'GT 112230586 Upstream 87bp 6886 chr19 39868130 39868130 1 + G A BLCA 39868130 + 39868110 39868150 41 TGTCCTCCCATCCAGGATGTGCTGGAAGGCGGGAACCTACG TGTCCTCCCATCCAGGATGTACTGGAAGGCGGGAACCTACG Direct Loss 0.931876703167943 0 NA NA prediction 0.863753406335886 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39868130 chr19:39868130 synonymous SNV . 0 21 hm7G_associated_SNPs_7113 0 0 1 0 1 SAMD4B chr19:39868125 3'AG 39868125 Downstream 6bp 6887 chr1 100133249 100133249 1 + G C rs143990967 100133249 + 100133229 100133269 41 ATGGAATCAGCAGCGGAAAAGAACAGGAAGAGATGAAGAAG ATGGAATCAGCAGCGGAAAACAACAGGAAGAGATGAAGAAG Direct Loss 0.931869194082981 0 NA NA prediction 0.863738388165961 Functional Loss - PALMD ENSG00000099260 CDS Human protein_coding chr1:100133249 chr1:100133249 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7116 0 0 1 0 2 PALMD chr1:100133198 3'AG 100133198 Downstream 52bp 6888 chr1 100133249 100133249 1 + G C rs143990967 100133249 + 100133229 100133269 41 ATGGAATCAGCAGCGGAAAAGAACAGGAAGAGATGAAGAAG ATGGAATCAGCAGCGGAAAACAACAGGAAGAGATGAAGAAG Direct Loss 0.931869194082981 0 NA NA prediction 0.863738388165961 Functional Loss - PALMD ENSG00000099260 CDS Human protein_coding chr1:100133249 chr1:100133249 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7116 0 0 1 0 2 PALMD chr1:100133322 5'GT 100133322 Upstream 74bp 6889 chrX 16168521 16168521 1 + G C CESC 16168521 + 16168501 16168541 41 TTTATCTGGATCATCTCCATGCTGCTGGCCATTCCAGAGGC TTTATCTGGATCATCTCCATCCTGCTGGCCATTCCAGAGGC Direct Loss 0.931868757639764 0 NA NA prediction 0.863737515279527 Functional Loss - GRPR ENSG00000126010 CDS Human protein_coding chrX:16168521 chrX:16168521 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_7117 0 0 0 0 1 GRPR chrX:16168428 3'AG 16168428 Downstream 94bp 6890 chr11 67256794 67256794 1 + G T UCEC 67256794 + 67256774 67256814 41 CGCAACATCGCGGTGGGCAAGGACCCCCTGGAGGGCCAGCG CGCAACATCGCGGTGGGCAATGACCCCCTGGAGGGCCAGCG Direct Loss 0.931858343886774 0 NA NA prediction 0.863716687773548 Functional Loss - AIP ENSG00000110711 CDS Human protein_coding chr11:67256794 chr11:67256794 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_7119 0 0 1 0 1 AIP chr11:67256738 3'AG 67256738 Downstream 57bp 6891 chr1 1848480 1848480 1 + G A UCEC 1848480 + 1848460 1848500 41 AGCAGATGATGAAGGAGGCCGACAAGGATGGGGACAGGACC AGCAGATGATGAAGGAGGCCAACAAGGATGGGGACAGGACC Direct Loss 0.931854595204561 0 NA NA prediction 0.863709190409122 Functional Loss - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848480 chr1:1848480 nonsynonymous SNV 0.964 4 21 hm7G_associated_SNPs_7121 0 0 0 0 1 CALML6 chr1:1848413 3'AG 1848413 Downstream 68bp 6892 chr3 180324096 180324096 1 + G T UCEC 180324096 + 180324076 180324116 41 GCCATGTGGATGCTATGAATGAATACAATAAAGCTTTGGAA GCCATGTGGATGCTATGAATTAATACAATAAAGCTTTGGAA Direct Loss 0.93185005571145 0 NA NA prediction 0.8637001114229 Functional Loss - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180324096 chr3:180324096 stopgain 1.000 1 21 hm7G_associated_SNPs_7122 0 0 1 0 1 TTC14 chr3:180324160 5'GT 180324160 Upstream 65bp 6893 chr7 128412687 128412687 1 - C T UCEC 128412687 - 128412667 128412707 41 GCTTGCATCATGAAGATGGTGTGTGGGAAGGCCATGACAGA GCTTGCATCATGAAGATGGTATGTGGGAAGGCCATGACAGA Direct Loss 0.931849539787331 0 NA NA prediction 0.863699079574663 Functional Loss - OPN1SW ENSG00000128617 CDS Human protein_coding chr7:128412687 chr7:128412687 synonymous SNV . 0 21 hm7G_associated_SNPs_7123 0 0 0 0 1 OPN1SW chr7:128412713 3'AG 128412713 Downstream 27bp 6894 chr10 38647260 38647260 1 + G C LUAD 38647260 + 38647240 38647280 41 TGGCATTGGCCTGGCCCTCTGCAAGCGGCTGCTGGCGGAAG TGGCATTGGCCTGGCCCTCTCCAAGCGGCTGCTGGCGGAAG Direct Loss 0.931842185504721 0 NA NA prediction 0.863684371009442 Functional Loss - HSD17B7P2 ENSG00000099251 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:38647260 chr10:38647260 . . 0 21 hm7G_associated_SNPs_7124 0 0 0 0 1 HSD17B7P2 chr10:38647240 3'AG 38647240 Downstream 21bp 6895 chr14 58875253 58875253 1 + G C BRCA 58875253 + 58875233 58875273 41 TATGTATTCACCAGCAATTTGAGGCAGACATGAATGAACAG TATGTATTCACCAGCAATTTCAGGCAGACATGAATGAACAG Direct Loss 0.931841366080928 0 NA NA prediction 0.863682732161857 Functional Loss - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58875253 chr14:58875253 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_7125 0 0 0 1 1 TOMM20L chr14:58875247 3'AG 58875247 Downstream 7bp 6896 chr17 79990839 79990839 1 + G A GBM 79990839 + 79990819 79990859 41 CAAGGACGTCTTTCTGATCTGCTTCTCTCTGGTGAGCCCGG CAAGGACGTCTTTCTGATCTACTTCTCTCTGGTGAGCCCGG Direct Loss 0.931839637231274 0 NA NA prediction 0.863679274462549 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990839 chr17:79990839 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7126 0 0 1 0 2 RAC3 chr17:79990823 3'AG 79990823 Downstream 17bp 6897 chr17 79990839 79990839 1 + G A GBM 79990839 + 79990819 79990859 41 CAAGGACGTCTTTCTGATCTGCTTCTCTCTGGTGAGCCCGG CAAGGACGTCTTTCTGATCTACTTCTCTCTGGTGAGCCCGG Direct Loss 0.931839637231274 0 NA NA prediction 0.863679274462549 Functional Loss - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79990839 chr17:79990839 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7126 0 0 1 0 2 RAC3 chr17:79990885 5'GT 79990885 Upstream 47bp 6898 chr19 9959812 9959812 1 + G A UCEC 9959812 + 9959792 9959832 41 GCCTCGTTTGCGCTGCGGACGGGGGAGATGAGCGGGCCCGT GCCTCGTTTGCGCTGCGGACAGGGGAGATGAGCGGGCCCGT Direct Loss 0.931837701409021 0 NA NA prediction 0.863675402818043 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9959812 chr19:9959812 synonymous SNV . 0 21 hm7G_associated_SNPs_7127 0 0 1 0 2 PIN1 chr19:9959766 3'AG 9959766 Downstream 47bp 6899 chr19 9959812 9959812 1 + G A UCEC 9959812 + 9959792 9959832 41 GCCTCGTTTGCGCTGCGGACGGGGGAGATGAGCGGGCCCGT GCCTCGTTTGCGCTGCGGACAGGGGAGATGAGCGGGCCCGT Direct Loss 0.931837701409021 0 NA NA prediction 0.863675402818043 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9959812 chr19:9959812 synonymous SNV . 0 21 hm7G_associated_SNPs_7127 0 0 1 0 2 PIN1 chr19:9959871 5'GT 9959871 Upstream 60bp 6900 chr6 10702702 10702702 1 + G T GBM 10702702 + 10702682 10702722 41 GCAAAGAAATGGGAATGCCTGAAGTCAATTAAAGCTCACAA GCAAAGAAATGGGAATGCCTTAAGTCAATTAAAGCTCACAA Direct Loss 0.93183287726143 0 NA NA prediction 0.863665754522861 Functional Loss - PAK1IP1 ENSG00000111845 CDS Human protein_coding chr6:10702702 chr6:10702702 synonymous SNV . 0 21 hm7G_associated_SNPs_7129 0 0 1 0 1 PAK1IP1 chr6:10702722 5'GT 10702722 Upstream 21bp 6901 chr15 43991212 43991212 1 + G A BLCA 43991212 + 43991192 43991232 41 ATCGATGGAGTAAACTATTTGATTGATTGTGAACGGCGTCT ATCGATGGAGTAAACTATTTAATTGATTGTGAACGGCGTCT Direct Loss 0.931824944422075 0 NA NA prediction 0.863649888844151 Functional Loss - CKMT1A ENSG00000223572 CDS Human protein_coding chr15:43991212 chr15:43991212 synonymous SNV . 0 21 hm7G_associated_SNPs_7130 0 0 0 0 1 CKMT1A chr15:43991171 3'AG 43991171 Downstream 42bp 6902 chr5 162901115 162901115 1 + G A rs567581726 162901115 + 162901095 162901135 41 GAAAATCTAAATGCAGAGATGCAAAACTTAAAACAGAAGTT GAAAATCTAAATGCAGAGATACAAAACTTAAAACAGAAGTT Direct Loss 0.931810327340629 0 NA NA prediction 0.863620654681258 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162901115 chr5:162901115 nonsynonymous SNV 0.526 0 21 hm7G_associated_SNPs_7133 0 0 1 0 2 HMMR chr5:162901063 3'AG 162901063 Downstream 53bp 6903 chr5 162901115 162901115 1 + G A rs567581726 162901115 + 162901095 162901135 41 GAAAATCTAAATGCAGAGATGCAAAACTTAAAACAGAAGTT GAAAATCTAAATGCAGAGATACAAAACTTAAAACAGAAGTT Direct Loss 0.931810327340629 0 NA NA prediction 0.863620654681258 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162901115 chr5:162901115 nonsynonymous SNV 0.526 0 21 hm7G_associated_SNPs_7133 0 0 1 0 2 HMMR chr5:162901211 5'GT 162901211 Upstream 97bp 6904 chr12 111342456 111342456 1 + G A SKCM 111342456 + 111342436 111342476 41 TACAGGCGCATCCTGGAAGTGGAAGGGGCAGAGGCTGAGAT TACAGGCGCATCCTGGAAGTAGAAGGGGCAGAGGCTGAGAT Direct Loss 0.931809603848887 0 NA NA prediction 0.863619207697775 Functional Loss - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111342456 chr12:111342456 synonymous SNV . 0 21 hm7G_associated_SNPs_7135 0 0 0 0 1 CCDC63 chr12:111342392 3'AG 111342392 Downstream 65bp 6905 chr9 130863453 130863453 1 + G T BRCA 130863453 + 130863433 130863473 41 TCCATTATCTCCAAGATCATGAGAAGAAGCTGAGGCTGGTG TCCATTATCTCCAAGATCATTAGAAGAAGCTGAGGCTGGTG Direct Loss 0.931803177069025 0 NA NA prediction 0.86360635413805 Functional Loss - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130863453 chr9:130863453 stopgain 1.000 1 21 hm7G_associated_SNPs_7139 0 0 1 0 2 SLC25A25 chr9:130863375 3'AG 130863375 Downstream 79bp 6906 chr9 130863453 130863453 1 + G T BRCA 130863453 + 130863433 130863473 41 TCCATTATCTCCAAGATCATGAGAAGAAGCTGAGGCTGGTG TCCATTATCTCCAAGATCATTAGAAGAAGCTGAGGCTGGTG Direct Loss 0.931803177069025 0 NA NA prediction 0.86360635413805 Functional Loss - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130863453 chr9:130863453 stopgain 1.000 1 21 hm7G_associated_SNPs_7139 0 0 1 0 2 SLC25A25 chr9:130863501 5'GT 130863501 Upstream 49bp 6907 chr6 16290809 16290809 1 + G A BLCA 16290809 + 16290789 16290829 41 TCTTCTACGGGATGAGCTCTGACACCGCCATGAACAAGCAC TCTTCTACGGGATGAGCTCTAACACCGCCATGAACAAGCAC Direct Loss 0.93179105153059 0 NA NA prediction 0.863582103061181 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16290809 chr6:16290809 nonsynonymous SNV 0.230 0 21 hm7G_associated_SNPs_7141 0 0 1 0 1 GMPR chr6:16290852 5'GT 16290852 Upstream 44bp 6908 chr2 132290642 132290642 1 + G T LUAD 132290642 + 132290622 132290662 41 CAAGAGCCTCTCCAAGAAATGGTAAGTCCCACAGGCATGGG CAAGAGCCTCTCCAAGAAATTGTAAGTCCCACAGGCATGGG Direct Loss 0.931785678730636 0 NA NA prediction 0.863571357461272 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290642 chr2:132290642 nonsynonymous SNV 0.217 2 21 hm7G_associated_SNPs_7142 0 0 0 0 2 CCDC74A chr2:132290586 3'AG 132290586 Downstream 57bp 6909 chr2 132290642 132290642 1 + G T LUAD 132290642 + 132290622 132290662 41 CAAGAGCCTCTCCAAGAAATGGTAAGTCCCACAGGCATGGG CAAGAGCCTCTCCAAGAAATTGTAAGTCCCACAGGCATGGG Direct Loss 0.931785678730636 0 NA NA prediction 0.863571357461272 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290642 chr2:132290642 nonsynonymous SNV 0.217 2 21 hm7G_associated_SNPs_7142 0 0 0 0 2 CCDC74A chr2:132290642 5'GT 132290642 Upstream 1bp 6910 chr19 8464844 8464844 1 + G A COAD 8464844 + 8464824 8464864 41 AGCAAGAGCACCATCGGCGTGGAGTTCGCCACCCGCAGCAT AGCAAGAGCACCATCGGCGTAGAGTTCGCCACCCGCAGCAT Direct Loss 0.931785374691781 0 NA NA prediction 0.863570749383562 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8464844 chr19:8464844 synonymous SNV . 0 21 hm7G_associated_SNPs_7143 0 0 1 0 2 RAB11B chr19:8464747 3'AG 8464747 Downstream 98bp 6911 chr19 8464844 8464844 1 + G A COAD 8464844 + 8464824 8464864 41 AGCAAGAGCACCATCGGCGTGGAGTTCGCCACCCGCAGCAT AGCAAGAGCACCATCGGCGTAGAGTTCGCCACCCGCAGCAT Direct Loss 0.931785374691781 0 NA NA prediction 0.863570749383562 Functional Loss - RAB11B ENSG00000185236 CDS Human protein_coding chr19:8464844 chr19:8464844 synonymous SNV . 0 21 hm7G_associated_SNPs_7143 0 0 1 0 2 RAB11B chr19:8464942 5'GT 8464942 Upstream 99bp 6912 chr11 763465 763465 1 + G C HNSC 763465 + 763445 763485 41 CATTTGTTGGGCGCATCCTTGATTGGCATGTGGCAAACACC CATTTGTTGGGCGCATCCTTCATTGGCATGTGGCAAACACC Direct Loss 0.93177967910783 0 NA NA prediction 0.863559358215659 Functional Loss - TALDO1 ENSG00000177156 CDS Human protein_coding chr11:763465 chr11:763465 nonsynonymous SNV 0.802 5 21 hm7G_associated_SNPs_7145 0 0 1 0 1 TALDO1 chr11:763519 5'GT 763519 Upstream 55bp 6913 chr12 118828978 118828978 1 + G T SARC 118828978 + 118828958 118828998 41 AAAGAAAAGAAGGCAGCAGTGAAAGAATTTGAAGACAAGAA AAAGAAAAGAAGGCAGCAGTTAAAGAATTTGAAGACAAGAA Direct Loss 0.931779568459861 0 NA NA prediction 0.863559136919722 Functional Loss - SUDS3 ENSG00000111707 CDS Human protein_coding chr12:118828978 chr12:118828978 synonymous SNV . 0 21 hm7G_associated_SNPs_7146 0 0 1 0 1 SUDS3 chr12:118828931 3'AG 118828931 Downstream 48bp 6914 chr21 27130373 27130373 1 + G T UCEC 27130373 + 27130353 27130393 41 CATTGGGTGGTTTGGGTAATGAAGGAATTCAGCATGACCGA CATTGGGTGGTTTGGGTAATTAAGGAATTCAGCATGACCGA Direct Loss 0.931771267132215 0 NA NA prediction 0.86354253426443 Functional Loss - GABPA ENSG00000154727 CDS Human protein_coding chr21:27130373 chr21:27130373 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_7147 0 0 0 0 1 GABPA chr21:27130321 3'AG 27130321 Downstream 53bp 6915 chr9 139818428 139818428 1 + G T SARC 139818428 + 139818408 139818448 41 AAGGGCCCGAATGACGCCCTGCTGCGGTGGCCCTTCAACCA AAGGGCCCGAATGACGCCCTTCTGCGGTGGCCCTTCAACCA Direct Loss 0.931766701857117 0 NA NA prediction 0.863533403714235 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139818428 chr9:139818428 synonymous SNV . 0 21 hm7G_associated_SNPs_7148 0 0 1 0 1 TRAF2 chr9:139818452 5'GT 139818452 Upstream 25bp 6916 chr11 113803729 113803729 1 + G A LUAD 113803729 + 113803709 113803749 41 ACAAAAAGGCGTTTTTGAATGACAGTGAGTGGGAACTTCTA ACAAAAAGGCGTTTTTGAATAACAGTGAGTGGGAACTTCTA Direct Loss 0.931763369688303 0 NA NA prediction 0.863526739376607 Functional Loss - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113803729 chr11:113803729 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_7151 0 0 0 0 2 HTR3B chr11:113803658 3'AG 113803658 Downstream 72bp 6917 chr11 113803729 113803729 1 + G A LUAD 113803729 + 113803709 113803749 41 ACAAAAAGGCGTTTTTGAATGACAGTGAGTGGGAACTTCTA ACAAAAAGGCGTTTTTGAATAACAGTGAGTGGGAACTTCTA Direct Loss 0.931763369688303 0 NA NA prediction 0.863526739376607 Functional Loss - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113803729 chr11:113803729 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_7151 0 0 0 0 2 HTR3B chr11:113803815 5'GT 113803815 Upstream 87bp 6918 chr11 118851224 118851224 1 + G A COAD 118851224 + 118851204 118851244 41 CACTTCCCCTTTTTCCGGACGGCCCCGGAAGGCTGGAAGAA CACTTCCCCTTTTTCCGGACAGCCCCGGAAGGCTGGAAGAA Direct Loss 0.931761047381957 0 NA NA prediction 0.863522094763914 Functional Loss - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118851224 chr11:118851224 synonymous SNV . 0 21 hm7G_associated_SNPs_7153 0 0 0 0 1 FOXR1 chr11:118851200 3'AG 118851200 Downstream 25bp 6919 chr1 41012254 41012254 1 + G C HNSC 41012254 + 41012234 41012274 41 AATCTGACTACCCACTTGTTGATGAACCAGGGAAGCATCGG AATCTGACTACCCACTTGTTCATGAACCAGGGAAGCATCGG Direct Loss 0.931759864445589 0 NA NA prediction 0.863519728891178 Functional Loss - ZNF684 ENSG00000117010 CDS Human protein_coding chr1:41012254 chr1:41012254 nonsynonymous SNV 0.295 1 21 hm7G_associated_SNPs_7155 0 0 0 0 1 ZNF684 chr1:41012234 3'AG 41012234 Downstream 21bp 6920 chr7 142989485 142989485 1 + G A BLCA 142989485 + 142989465 142989505 41 GATGCCTTCTGTGAAGCACTGAGGGAGACCAAGCAAGGCCA GATGCCTTCTGTGAAGCACTAAGGGAGACCAAGCAAGGCCA Direct Loss 0.931754719933821 0 NA NA prediction 0.863509439867643 Functional Loss - CASP2 ENSG00000106144 CDS Human protein_coding chr7:142989485 chr7:142989485 synonymous SNV . 0 21 hm7G_associated_SNPs_7156 0 0 1 0 2 CASP2 chr7:142989393 3'AG 142989393 Downstream 93bp 6921 chr7 142989485 142989485 1 + G A BLCA 142989485 + 142989465 142989505 41 GATGCCTTCTGTGAAGCACTGAGGGAGACCAAGCAAGGCCA GATGCCTTCTGTGAAGCACTAAGGGAGACCAAGCAAGGCCA Direct Loss 0.931754719933821 0 NA NA prediction 0.863509439867643 Functional Loss - CASP2 ENSG00000106144 CDS Human protein_coding chr7:142989485 chr7:142989485 synonymous SNV . 0 21 hm7G_associated_SNPs_7156 0 0 1 0 2 CASP2 chr7:142989560 5'GT 142989560 Upstream 76bp 6922 chr3 46939381 46939381 1 + G T LUAD 46939381 + 46939361 46939401 41 GGAATGGGACCACATCCTGTGCTGGCCGCTGGGGGCACCAG GGAATGGGACCACATCCTGTTCTGGCCGCTGGGGGCACCAG Direct Loss 0.931752940767405 0 NA NA prediction 0.86350588153481 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939381 chr3:46939381 nonsynonymous SNV 0.988 3 21 hm7G_associated_SNPs_7157 0 0 0 0 2 PTH1R chr3:46939345 3'AG 46939345 Downstream 37bp 6923 chr3 46939381 46939381 1 + G T LUAD 46939381 + 46939361 46939401 41 GGAATGGGACCACATCCTGTGCTGGCCGCTGGGGGCACCAG GGAATGGGACCACATCCTGTTCTGGCCGCTGGGGGCACCAG Direct Loss 0.931752940767405 0 NA NA prediction 0.86350588153481 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939381 chr3:46939381 nonsynonymous SNV 0.988 3 21 hm7G_associated_SNPs_7157 0 0 0 0 2 PTH1R chr3:46939455 5'GT 46939455 Upstream 75bp 6924 chr7 43830854 43830854 1 + G T SARC 43830854 + 43830834 43830874 41 TTACTCTGAAATAGAAGGGAGCTCGGGAGCATTGATGGAGT TTACTCTGAAATAGAAGGGATCTCGGGAGCATTGATGGAGT Direct Loss 0.931733929664536 0 NA NA prediction 0.863467859329072 Functional Loss - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43830854 chr7:43830854 nonsynonymous SNV 0.518 1 21 hm7G_associated_SNPs_7159 0 0 1 0 1 BLVRA chr7:43830848 3'AG 43830848 Downstream 7bp 6925 chr17 38151735 38151735 1 + G A COAD 38151735 + 38151715 38151755 41 TTGGCTGACATCGCCCAGAAGCTGCAGTTGGATAGCCCCGA TTGGCTGACATCGCCCAGAAACTGCAGTTGGATAGCCCCGA Direct Loss 0.93173052434826 0 NA NA prediction 0.86346104869652 Functional Loss - PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151735 chr17:38151735 synonymous SNV . 0 21 hm7G_associated_SNPs_7160 0 0 1 0 2 PSMD3 chr17:38151677 3'AG 38151677 Downstream 59bp 6926 chr17 38151735 38151735 1 + G A COAD 38151735 + 38151715 38151755 41 TTGGCTGACATCGCCCAGAAGCTGCAGTTGGATAGCCCCGA TTGGCTGACATCGCCCAGAAACTGCAGTTGGATAGCCCCGA Direct Loss 0.93173052434826 0 NA NA prediction 0.86346104869652 Functional Loss - PSMD3 ENSG00000108344 CDS Human protein_coding chr17:38151735 chr17:38151735 synonymous SNV . 0 21 hm7G_associated_SNPs_7160 0 0 1 0 2 PSMD3 chr17:38151780 5'GT 38151780 Upstream 46bp 6927 chr1 151239720 151239720 1 + G A rs11430 151239720 + 151239700 151239740 41 CTAGAGAACCTCCCAGGTGTGGATCCCAACAATGAAGCCAT CTAGAGAACCTCCCAGGTGTAGATCCCAACAATGAAGCCAT Direct Loss 0.931720809969164 0 NA NA prediction 0.863441619938329 Functional Loss - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151239720 chr1:151239720 synonymous SNV . 0 21 hm7G_associated_SNPs_7162 0 0 0 0 1 PSMD4 chr1:151239649 3'AG 151239649 Downstream 72bp 6928 chr16 23223406 23223406 1 + G T SKCM 23223406 + 23223386 23223426 41 TGGTGGAGAAATGTGGGTGTGCCCAGTACAGCCAGCCTCTA TGGTGGAGAAATGTGGGTGTTCCCAGTACAGCCAGCCTCTA Direct Loss 0.931714028472215 0 NA NA prediction 0.86342805694443 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23223406 chr16:23223406 nonsynonymous SNV 0.915 4 21 hm7G_associated_SNPs_7163 0 0 0 0 2 SCNN1G chr16:23223355 3'AG 23223355 Downstream 52bp 6929 chr16 23223406 23223406 1 + G T SKCM 23223406 + 23223386 23223426 41 TGGTGGAGAAATGTGGGTGTGCCCAGTACAGCCAGCCTCTA TGGTGGAGAAATGTGGGTGTTCCCAGTACAGCCAGCCTCTA Direct Loss 0.931714028472215 0 NA NA prediction 0.86342805694443 Functional Loss - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23223406 chr16:23223406 nonsynonymous SNV 0.915 4 21 hm7G_associated_SNPs_7163 0 0 0 0 2 SCNN1G chr16:23223472 5'GT 23223472 Upstream 67bp 6930 chr1 24077413 24077413 1 + G T UCEC 24077413 + 24077393 24077433 41 GATGCCCTGCAGAAGGAGGAGGAGATGGAGGGGGACTACCA GATGCCCTGCAGAAGGAGGATGAGATGGAGGGGGACTACCA Direct Loss 0.931712439340252 0 NA NA prediction 0.863424878680504 Functional Loss - ELOA ENSG00000011007 CDS Human protein_coding chr1:24077413 chr1:24077413 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_7164 0 0 1 0 1 ELOA chr1:24077335 3'AG 24077335 Downstream 79bp 6931 chr6 74072990 74072990 1 + G T ACC 74072990 + 74072970 74073010 41 GACTATCACCGCCAGCTCCAGGCGAAAGGTACGGGGCTGGG GACTATCACCGCCAGCTCCATGCGAAAGGTACGGGGCTGGG Direct Loss 0.931712129234339 0 NA NA prediction 0.863424258468677 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072990 chr6:74072990 nonsynonymous SNV 0.001 2 21 hm7G_associated_SNPs_7165 0 0 0 0 1 KHDC3L chr6:74072997 5'GT 74072997 Upstream 8bp 6932 chr20 44642386 44642386 1 + G A BLCA 44642386 + 44642366 44642406 41 CCCGCGCTGCCCCGCAAGCTGGACTCGGTCTTTGAGGAGCG CCCGCGCTGCCCCGCAAGCTAGACTCGGTCTTTGAGGAGCG Direct Loss 0.931707271424792 0 NA NA prediction 0.863414542849584 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642386 chr20:44642386 synonymous SNV . 0 21 hm7G_associated_SNPs_7166 0 0 0 0 2 MMP9 chr20:44642296 3'AG 44642296 Downstream 91bp 6933 chr20 44642386 44642386 1 + G A BLCA 44642386 + 44642366 44642406 41 CCCGCGCTGCCCCGCAAGCTGGACTCGGTCTTTGAGGAGCG CCCGCGCTGCCCCGCAAGCTAGACTCGGTCTTTGAGGAGCG Direct Loss 0.931707271424792 0 NA NA prediction 0.863414542849584 Functional Loss - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642386 chr20:44642386 synonymous SNV . 0 21 hm7G_associated_SNPs_7166 0 0 0 0 2 MMP9 chr20:44642435 5'GT 44642435 Upstream 50bp 6934 chr16 23767770 23767770 1 + G T UCEC 23767770 + 23767750 23767790 41 TCCAGGCATGAGATGCTGCAGGTTGGCAGAAAGCGAGAGCA TCCAGGCATGAGATGCTGCATGTTGGCAGAAAGCGAGAGCA Direct Loss 0.931691800491543 0 NA NA prediction 0.863383600983085 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23767770 chr16:23767770 nonsynonymous SNV 0.752 1 21 hm7G_associated_SNPs_7167 0 0 0 0 2 CHP2 chr16:23767709 3'AG 23767709 Downstream 62bp 6935 chr16 23767770 23767770 1 + G T UCEC 23767770 + 23767750 23767790 41 TCCAGGCATGAGATGCTGCAGGTTGGCAGAAAGCGAGAGCA TCCAGGCATGAGATGCTGCATGTTGGCAGAAAGCGAGAGCA Direct Loss 0.931691800491543 0 NA NA prediction 0.863383600983085 Functional Loss - CHP2 ENSG00000166869 CDS Human protein_coding chr16:23767770 chr16:23767770 nonsynonymous SNV 0.752 1 21 hm7G_associated_SNPs_7167 0 0 0 0 2 CHP2 chr16:23767770 5'GT 23767770 Upstream 1bp 6936 chr11 46750981 46750981 1 + G A SKCM 46750981 + 46750961 46751001 41 ACAGGCTGGGGCAACCTGAAGGAGACGTGGACAGCCAACGT ACAGGCTGGGGCAACCTGAAAGAGACGTGGACAGCCAACGT Direct Loss 0.931685805618237 0 NA NA prediction 0.863371611236474 Functional Loss - F2 ENSG00000180210 CDS Human protein_coding chr11:46750981 chr11:46750981 synonymous SNV . 0 21 hm7G_associated_SNPs_7168 0 0 1 0 1 F2 chr11:46750930 3'AG 46750930 Downstream 52bp 6937 chr7 141418911 141418911 1 + G A SKCM 141418911 + 141418891 141418931 41 CCAACATGGCTTCCCGCTATGAAAAAGAATTCTTGGAGGTT CCAACATGGCTTCCCGCTATAAAAAAGAATTCTTGGAGGTT Direct Loss 0.931678054956375 0 NA NA prediction 0.863356109912751 Functional Loss - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141418911 chr7:141418911 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_7170 0 0 0 0 1 WEE2 chr7:141418872 3'AG 141418872 Downstream 40bp 6938 chr12 124071336 124071336 1 + G T UCEC 124071336 + 124071316 124071356 41 GAATTTACAAAGGAGACAGAGAATCCAGTGGGAAATACACA GAATTTACAAAGGAGACAGATAATCCAGTGGGAAATACACA Direct Loss 0.931674212835191 0 NA NA prediction 0.863348425670383 Functional Loss - TMED2 ENSG00000086598 CDS Human protein_coding chr12:124071336 chr12:124071336 stopgain 0.999 1 21 hm7G_associated_SNPs_7171 0 0 1 0 1 TMED2 chr12:124071294 3'AG 124071294 Downstream 43bp 6939 chr8 21904051 21904051 1 + G A SKCM 21904051 + 21904031 21904071 41 ACCACAGCCAAGCTCATAGTGGAGACGGACACGTTTGGCAG ACCACAGCCAAGCTCATAGTAGAGACGGACACGTTTGGCAG Direct Loss 0.931673949077835 0 NA NA prediction 0.863347898155669 Functional Loss - FGF17 ENSG00000158815 CDS Human protein_coding chr8:21904051 chr8:21904051 synonymous SNV . 0 21 hm7G_associated_SNPs_7172 0 0 0 0 2 FGF17 chr8:21904038 3'AG 21904038 Downstream 14bp 6940 chr8 21904051 21904051 1 + G A SKCM 21904051 + 21904031 21904071 41 ACCACAGCCAAGCTCATAGTGGAGACGGACACGTTTGGCAG ACCACAGCCAAGCTCATAGTAGAGACGGACACGTTTGGCAG Direct Loss 0.931673949077835 0 NA NA prediction 0.863347898155669 Functional Loss - FGF17 ENSG00000158815 CDS Human protein_coding chr8:21904051 chr8:21904051 synonymous SNV . 0 21 hm7G_associated_SNPs_7172 0 0 0 0 2 FGF17 chr8:21904144 5'GT 21904144 Upstream 94bp 6941 chr9 139818401 139818401 1 + G C ACC 139818401 + 139818381 139818421 41 CACCTGTCCCTCTTCTTTGTGGTGATGAAGGGCCCGAATGA CACCTGTCCCTCTTCTTTGTCGTGATGAAGGGCCCGAATGA Direct Loss 0.931673336280143 0 NA NA prediction 0.863346672560287 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139818401 chr9:139818401 synonymous SNV . 0 21 hm7G_associated_SNPs_7173 0 0 1 0 2 TRAF2 chr9:139818304 3'AG 139818304 Downstream 98bp 6942 chr9 139818401 139818401 1 + G C ACC 139818401 + 139818381 139818421 41 CACCTGTCCCTCTTCTTTGTGGTGATGAAGGGCCCGAATGA CACCTGTCCCTCTTCTTTGTCGTGATGAAGGGCCCGAATGA Direct Loss 0.931673336280143 0 NA NA prediction 0.863346672560287 Functional Loss - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139818401 chr9:139818401 synonymous SNV . 0 21 hm7G_associated_SNPs_7173 0 0 1 0 2 TRAF2 chr9:139818452 5'GT 139818452 Upstream 52bp 6943 chr11 58391590 58391590 1 + G A GBM 58391590 + 58391570 58391610 41 AGCACTGATCAGTGGAGTGAGCTGACCGAGGCAGAGCGACT AGCACTGATCAGTGGAGTGAACTGACCGAGGCAGAGCGACT Direct Loss 0.931672814817521 0 NA NA prediction 0.863345629635043 Functional Loss - CNTF ENSG00000242689 CDS Human protein_coding chr11:58391590 chr11:58391590 synonymous SNV . 0 21 hm7G_associated_SNPs_7174 0 0 1 0 1 CNTF chr11:58391507 3'AG 58391507 Downstream 84bp 6944 chr4 53731534 53731534 1 + G T UCEC 53731534 + 53731514 53731554 41 AGCCTGAGCTGCAGTGAACAGCTGAATAGGTGCATTCGCTG AGCCTGAGCTGCAGTGAACATCTGAATAGGTGCATTCGCTG Direct Loss 0.93166673463538 0 NA NA prediction 0.86333346927076 Functional Loss - RASL11B ENSG00000128045 CDS Human protein_coding chr4:53731534 chr4:53731534 nonsynonymous SNV 0.918 1 21 hm7G_associated_SNPs_7175 0 0 0 0 1 RASL11B chr4:53731502 3'AG 53731502 Downstream 33bp 6945 chr6 35205687 35205687 1 + G A ESCA 35205687 + 35205667 35205707 41 CCTCCTAAACAGAGACCTGTGCTGTCAACAACGGGGGCTGT CCTCCTAAACAGAGACCTGTACTGTCAACAACGGGGGCTGT Direct Loss 0.931665620183854 0 NA NA prediction 0.863331240367708 Functional Loss - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35205687 chr6:35205687 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_7176 0 0 0 0 1 SCUBE3 chr6:35205679 3'AG 35205679 Downstream 9bp 6946 chr6 144181587 144181587 1 + G A LUSC 144181587 + 144181567 144181607 41 ATGAGCAATATGATGATGATGAAATTGGAGCTCTGGATAAT ATGAGCAATATGATGATGATAAAATTGGAGCTCTGGATAAT Direct Loss 0.931664774995206 0 NA NA prediction 0.863329549990411 Functional Loss - LTV1 ENSG00000135521 CDS Human protein_coding chr6:144181587 chr6:144181587 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_7177 0 0 1 0 1 LTV1 chr6:144181563 3'AG 144181563 Downstream 25bp 6947 chr1 180241004 180241004 1 + G A BRCA 180241004 + 180240984 180241024 41 CAGAAGGGCCAAAGAGAAACGCCTGAAGAAGGATGCAGGGC CAGAAGGGCCAAAGAGAAACACCTGAAGAAGGATGCAGGGC Direct Loss 0.93166346892736 0 NA NA prediction 0.863326937854719 Functional Loss - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180241004 chr1:180241004 nonsynonymous SNV 0.638 5 21 hm7G_associated_SNPs_7178 0 0 0 0 1 LHX4 chr1:180240970 3'AG 180240970 Downstream 35bp 6948 chr4 88578220 88578220 1 + G A SKCM 88578220 + 88578200 88578240 41 ATAATGAATCTGAGGATTCTGAAGAATGGAAGGTGAGTAGA ATAATGAATCTGAGGATTCTAAAGAATGGAAGGTGAGTAGA Direct Loss 0.931653306655074 0 NA NA prediction 0.863306613310147 Functional Loss - DMP1 ENSG00000152592 CDS Human protein_coding chr4:88578220 chr4:88578220 nonsynonymous SNV 0.841 1 21 hm7G_associated_SNPs_7180 1 0 0 0 2 DMP1 chr4:88578184 3'AG 88578184 Downstream 37bp 6949 chr4 88578220 88578220 1 + G A SKCM 88578220 + 88578200 88578240 41 ATAATGAATCTGAGGATTCTGAAGAATGGAAGGTGAGTAGA ATAATGAATCTGAGGATTCTAAAGAATGGAAGGTGAGTAGA Direct Loss 0.931653306655074 0 NA NA prediction 0.863306613310147 Functional Loss - DMP1 ENSG00000152592 CDS Human protein_coding chr4:88578220 chr4:88578220 nonsynonymous SNV 0.841 1 21 hm7G_associated_SNPs_7180 1 0 0 0 2 DMP1 chr4:88578231 5'GT 88578231 Upstream 12bp 6950 chr4 187118697 187118697 1 + G T LUSC 187118697 + 187118677 187118717 41 TATTTTATAGAAACAGCTATGGGGAAGAATATTGGTGCTCA TATTTTATAGAAACAGCTATTGGGAAGAATATTGGTGCTCA Direct Loss 0.931645372897793 0 NA NA prediction 0.863290745795586 Functional Loss - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187118697 chr4:187118697 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_7181 0 0 0 0 2 CYP4V2 chr4:187118687 3'AG 187118687 Downstream 11bp 6951 chr4 187118697 187118697 1 + G T LUSC 187118697 + 187118677 187118717 41 TATTTTATAGAAACAGCTATGGGGAAGAATATTGGTGCTCA TATTTTATAGAAACAGCTATTGGGAAGAATATTGGTGCTCA Direct Loss 0.931645372897793 0 NA NA prediction 0.863290745795586 Functional Loss - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187118697 chr4:187118697 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_7181 0 0 0 0 2 CYP4V2 chr4:187118756 5'GT 187118756 Upstream 60bp 6952 chrX 37664301 37664301 1 + G T LUAD 37664301 + 37664281 37664321 41 GGCACTGCCAGTGAAGATGTGTTCAGCTATGAGGTGGTGAT GGCACTGCCAGTGAAGATGTTTTCAGCTATGAGGTGGTGAT Direct Loss 0.931642169217743 0 NA NA prediction 0.863284338435487 Functional Loss - CYBB ENSG00000165168 CDS Human protein_coding chrX:37664301 chrX:37664301 synonymous SNV . 0 21 hm7G_associated_SNPs_7182 0 0 0 0 1 CYBB chrX:37664259 3'AG 37664259 Downstream 43bp 6953 chr17 30801803 30801803 1 + G T LAML 30801803 + 30801783 30801823 41 CCAGAAGATGTCCAGGCTTTGGTGAGCGGGAAGCTTGCACT CCAGAAGATGTCCAGGCTTTTGTGAGCGGGAAGCTTGCACT Direct Loss 0.931640319604776 0 NA NA prediction 0.863280639209553 Functional Loss - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30801803 chr17:30801803 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_7183 0 0 1 0 2 PSMD11 chr17:30801782 3'AG 30801782 Downstream 22bp 6954 chr17 30801803 30801803 1 + G T LAML 30801803 + 30801783 30801823 41 CCAGAAGATGTCCAGGCTTTGGTGAGCGGGAAGCTTGCACT CCAGAAGATGTCCAGGCTTTTGTGAGCGGGAAGCTTGCACT Direct Loss 0.931640319604776 0 NA NA prediction 0.863280639209553 Functional Loss - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30801803 chr17:30801803 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_7183 0 0 1 0 2 PSMD11 chr17:30801842 5'GT 30801842 Upstream 40bp 6955 chr1 32653614 32653614 1 + G A UCEC 32653614 + 32653594 32653634 41 CTACAGAAAAAGCAGAGCCAGCTGGTGCAAGAGAAGGACCA CTACAGAAAAAGCAGAGCCAACTGGTGCAAGAGAAGGACCA Direct Loss 0.931639687803434 0 NA NA prediction 0.863279375606867 Functional Loss - TXLNA ENSG00000084652 CDS Human protein_coding chr1:32653614 chr1:32653614 synonymous SNV . 0 21 hm7G_associated_SNPs_7184 0 0 1 0 1 TXLNA chr1:32653555 3'AG 32653555 Downstream 60bp 6956 chr6 17421853 17421853 1 + G A UCEC 17421853 + 17421833 17421873 41 GCCGCCTGGAGTCGCTGTCTGCAGAGTCCCACAGGCCCCCT GCCGCCTGGAGTCGCTGTCTACAGAGTCCCACAGGCCCCCT Direct Loss 0.931639619213249 0 NA NA prediction 0.863279238426499 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17421853 chr6:17421853 nonsynonymous SNV 0.785 0 21 hm7G_associated_SNPs_7185 0 0 1 0 2 CAP2 chr6:17421786 3'AG 17421786 Downstream 68bp 6957 chr6 17421853 17421853 1 + G A UCEC 17421853 + 17421833 17421873 41 GCCGCCTGGAGTCGCTGTCTGCAGAGTCCCACAGGCCCCCT GCCGCCTGGAGTCGCTGTCTACAGAGTCCCACAGGCCCCCT Direct Loss 0.931639619213249 0 NA NA prediction 0.863279238426499 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17421853 chr6:17421853 nonsynonymous SNV 0.785 0 21 hm7G_associated_SNPs_7185 0 0 1 0 2 CAP2 chr6:17421907 5'GT 17421907 Upstream 55bp 6958 chr11 74521325 74521325 1 + G T UCEC 74521325 + 74521305 74521345 41 CAGGGAAAAGGAAAATGGATGAACAGAAAAAAAGAGATGAA CAGGGAAAAGGAAAATGGATTAACAGAAAAAAAGAGATGAA Direct Loss 0.931635265324992 0 NA NA prediction 0.863270530649985 Functional Loss - RNF169 ENSG00000166439 CDS Human protein_coding chr11:74521325 chr11:74521325 stopgain 1.000 0 21 hm7G_associated_SNPs_7186 0 0 1 0 2 RNF169 chr11:74521229 3'AG 74521229 Downstream 97bp 6959 chr11 74521325 74521325 1 + G T UCEC 74521325 + 74521305 74521345 41 CAGGGAAAAGGAAAATGGATGAACAGAAAAAAAGAGATGAA CAGGGAAAAGGAAAATGGATTAACAGAAAAAAAGAGATGAA Direct Loss 0.931635265324992 0 NA NA prediction 0.863270530649985 Functional Loss - RNF169 ENSG00000166439 CDS Human protein_coding chr11:74521325 chr11:74521325 stopgain 1.000 0 21 hm7G_associated_SNPs_7186 0 0 1 0 2 RNF169 chr11:74521375 5'GT 74521375 Upstream 51bp 6960 chr17 37790285 37790285 1 + G T UCEC 37790285 + 37790265 37790305 41 AAGAGGAGGATGATGAAGAAGAGGAAGAAGAAGAGGACAGC AAGAGGAGGATGATGAAGAATAGGAAGAAGAAGAGGACAGC Direct Loss 0.931631325084481 0 NA NA prediction 0.863262650168962 Functional Loss - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37790285 chr17:37790285 stopgain 0.980 0 21 hm7G_associated_SNPs_7187 0 0 0 0 1 PPP1R1B chr17:37790339 5'GT 37790339 Upstream 55bp 6961 chr3 13651063 13651063 1 + T G rs199935173 13651064 + 13651044 13651084 41 TTGCAGGAGAAGAGCTGCATGGCCGGCGTCCTGGGAGCCAA TTGCAGGAGAAGAGCTGCAGGGCCGGCGTCCTGGGAGCCAA < 41bp 0.824665401937752 0.502462133537087 NA NA prediction 0.644406536801329 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13651064 chr3:13651063 nonsynonymous SNV 0.821 2 20 hm7G_associated_SNPs_7188 0 0 0 0 1 FBLN2 chr3:13651013 3'AG 13651013 Downstream 51bp 6962 chr9 127618856 127618856 1 + T G rs117033551 127618857 + 127618837 127618877 41 TGCCAACATCAGCTGCCTGTGCTATTCAGCATCCGGCCTCC TGCCAACATCAGCTGCCTGGGCTATTCAGCATCCGGCCTCC < 41bp 0.817648267949721 0.495911848011342 NA NA prediction 0.635296535899441 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618857 chr9:127618856 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_7189 0 0 0 0 1 WDR38 chr9:127618879 5'GT 127618879 Upstream 24bp 6963 chr6 41533570 41533570 1 + T G rs551183343 41533571 + 41533551 41533591 41 ATGGCGTGGGCAGCCTCTCTGGGCAAGCCGATGGCAGCAGC ATGGCGTGGGCAGCCTCTCGGGGCAAGCCGATGGCAGCAGC < 41bp 0.816765547693503 0.497522972114906 NA NA prediction 0.633531095387007 Functional Loss - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41533571 chr6:41533570 synonymous SNV . 0 20 hm7G_associated_SNPs_7190 0 0 1 0 1 FOXP4 chr6:41533483 3'AG 41533483 Downstream 88bp 6964 chr16 27772789 27772789 1 + T G LUSC 27772790 + 27772770 27772810 41 TGCACTACCTGGGGCTCACTGGCCTGGAAGTGGTGGGCAAG TGCACTACCTGGGGCTCACGGGCCTGGAAGTGGTGGGCAAG < 41bp 0.81782501268478 0.501574215435884 NA NA prediction 0.632501594497793 Functional Loss - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27772790 chr16:27772789 synonymous SNV . 0 20 hm7G_associated_SNPs_7191 0 0 1 0 1 KIAA0556 chr16:27772734 3'AG 27772734 Downstream 56bp 6965 chr12 644365 644365 1 + T G COAD 644366 + 644346 644386 41 AGAGAACTGGCCAAGGCTCTGGCCAGCAGGAACATTCCAGC AGAGAACTGGCCAAGGCTCGGGCCAGCAGGAACATTCCAGC < 41bp 0.822363710743447 0.506631390658419 NA NA prediction 0.631464640170056 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:644366 chr12:644365 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_7192 0 0 0 0 1 B4GALNT3 chr12:644435 5'GT 644435 Upstream 71bp 6966 chr19 35827052 35827052 1 + T G SKCM 35827053 + 35827033 35827073 41 GTATCCGATCCAATTGCAGTGGCTCCTAGAGGGGGTTCCAA GTATCCGATCCAATTGCAGGGGCTCCTAGAGGGGGTTCCAA < 41bp 0.814182082717254 0.488666811779023 NA NA prediction 0.628364165434508 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35827053 chr19:35827052 nonsynonymous SNV 0.050 5 20 hm7G_associated_SNPs_7196 0 0 0 0 1 CD22 chr19:35827052 3'AG 35827052 Downstream 1bp 6967 chr1 48701492 48701492 1 + T G rs182008527 48701493 + 48701473 48701513 41 GCAGCACCCTGTTCACCATTGATGTGTGGCAGCGCTTCCGC GCAGCACCCTGTTCACCATGGATGTGTGGCAGCGCTTCCGC < 41bp 0.814175954196195 0.499173019245476 NA NA prediction 0.62835190839239 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48701493 chr1:48701492 nonsynonymous SNV 0.187 1 20 hm7G_associated_SNPs_7197 0 0 1 0 2 SLC5A9 chr1:48701401 3'AG 48701401 Downstream 92bp 6968 chr1 48701492 48701492 1 + T G rs182008527 48701493 + 48701473 48701513 41 GCAGCACCCTGTTCACCATTGATGTGTGGCAGCGCTTCCGC GCAGCACCCTGTTCACCATGGATGTGTGGCAGCGCTTCCGC < 41bp 0.814175954196195 0.499173019245476 NA NA prediction 0.62835190839239 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48701493 chr1:48701492 nonsynonymous SNV 0.187 1 20 hm7G_associated_SNPs_7197 0 0 1 0 2 SLC5A9 chr1:48701551 5'GT 48701551 Upstream 60bp 6969 chr19 36272086 36272086 1 + T G LIHC 36272087 + 36272067 36272107 41 GCTGCTGCTCCGAGTTCATTGAGGCCCACGGGGTGGTGGAT GCTGCTGCTCCGAGTTCATGGAGGCCCACGGGGTGGTGGAT < 41bp 0.814092135614788 0.487997947928826 NA NA prediction 0.628184271229577 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36272087 chr19:36272086 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_7198 0 0 1 0 2 ARHGAP33 chr19:36272052 3'AG 36272052 Downstream 35bp 6970 chr19 36272086 36272086 1 + T G LIHC 36272087 + 36272067 36272107 41 GCTGCTGCTCCGAGTTCATTGAGGCCCACGGGGTGGTGGAT GCTGCTGCTCCGAGTTCATGGAGGCCCACGGGGTGGTGGAT < 41bp 0.814092135614788 0.487997947928826 NA NA prediction 0.628184271229577 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36272087 chr19:36272086 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_7198 0 0 1 0 2 ARHGAP33 chr19:36272154 5'GT 36272154 Upstream 69bp 6971 chr22 29629429 29629429 1 + T G HNSC 29629430 + 29629410 29629450 41 ACTGGCCCCAGGGACCCACTGGGCCTCCAGGCCCTCCAGGG ACTGGCCCCAGGGACCCACGGGGCCTCCAGGCCCTCCAGGG < 41bp 0.833787356636811 0.520509065029946 NA NA prediction 0.626556583213729 Functional Loss - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29629430 chr22:29629429 synonymous SNV . 0 20 hm7G_associated_SNPs_7200 0 0 0 0 1 EMID1 chr22:29629457 5'GT 29629457 Upstream 29bp 6972 chr16 67236330 67236330 1 + T G KIRP 67236331 + 67236311 67236351 41 GCCCAGGACTTCTCACCCATGTTCTTCGGCCAAGACCAGAG GCCCAGGACTTCTCACCCAGGTTCTTCGGCCAAGACCAGAG < 41bp 0.818942201773141 0.506155059007856 NA NA prediction 0.625574285530571 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236331 chr16:67236330 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_7201 0 0 0 0 1 ELMO3 chr16:67236300 3'AG 67236300 Downstream 31bp 6973 chr22 29695287 29695287 1 + T G LUSC 29695288 + 29695268 29695308 41 AGTGTAAGGCCCCAAAGCCTGAAGGCTTCCTCCCGCCACCC AGTGTAAGGCCCCAAAGCCGGAAGGCTTCCTCCCGCCACCC < 41bp 0.812037367593595 0.496883518607424 NA NA prediction 0.62407473518719 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695288 chr22:29695287 synonymous SNV . 0 20 hm7G_associated_SNPs_7204 0 0 1 0 2 EWSR1 chr22:29695224 3'AG 29695224 Downstream 64bp 6974 chr22 29695287 29695287 1 + T G LUSC 29695288 + 29695268 29695308 41 AGTGTAAGGCCCCAAAGCCTGAAGGCTTCCTCCCGCCACCC AGTGTAAGGCCCCAAAGCCGGAAGGCTTCCTCCCGCCACCC < 41bp 0.812037367593595 0.496883518607424 NA NA prediction 0.62407473518719 Functional Loss - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695288 chr22:29695287 synonymous SNV . 0 20 hm7G_associated_SNPs_7204 0 0 1 0 2 EWSR1 chr22:29695321 5'GT 29695321 Upstream 35bp 6975 chr2 75106000 75106000 1 + T G GBM 75106001 + 75105981 75106021 41 AACAAAGGCGAGGAGCGGCTGCGCTCTACTATTGGGGTCGA AACAAAGGCGAGGAGCGGCGGCGCTCTACTATTGGGGTCGA < 41bp 0.811941027583522 0.496440215699504 NA NA prediction 0.623882055167043 Functional Loss - HK2 ENSG00000159399 CDS Human protein_coding chr2:75106001 chr2:75106000 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_7205 0 0 1 0 1 HK2 chr2:75106048 5'GT 75106048 Upstream 49bp 6976 chr12 6494476 6494476 1 + T G PRAD 6494477 + 6494457 6494497 41 GGGAATGTTCTGTGCTGCCTGGGCCCTCGAGTGTACACACT GGGAATGTTCTGTGCTGCCGGGGCCCTCGAGTGTACACACT < 41bp 0.827819179421351 0.516161940233847 NA NA prediction 0.623314478375009 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6494477 chr12:6494476 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7206 0 0 1 0 2 LTBR chr12:6494393 3'AG 6494393 Downstream 84bp 6977 chr12 6494476 6494476 1 + T G PRAD 6494477 + 6494457 6494497 41 GGGAATGTTCTGTGCTGCCTGGGCCCTCGAGTGTACACACT GGGAATGTTCTGTGCTGCCGGGGCCCTCGAGTGTACACACT < 41bp 0.827819179421351 0.516161940233847 NA NA prediction 0.623314478375009 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6494477 chr12:6494476 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7206 0 0 1 0 2 LTBR chr12:6494545 5'GT 6494545 Upstream 70bp 6978 chr2 233322328 233322328 1 + T G STAD 233322329 + 233322309 233322349 41 CCATGGGGACCCCAGACCCTGAGTACCCAGCTGATGCCAGC CCATGGGGACCCCAGACCCGGAGTACCCAGCTGATGCCAGC < 41bp 0.811656820321878 0.491107496171408 NA NA prediction 0.623313640643757 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322329 chr2:233322328 synonymous SNV . 0 20 hm7G_associated_SNPs_7207 0 0 0 0 2 ALPI chr2:233322275 3'AG 233322275 Downstream 54bp 6979 chr2 233322328 233322328 1 + T G STAD 233322329 + 233322309 233322349 41 CCATGGGGACCCCAGACCCTGAGTACCCAGCTGATGCCAGC CCATGGGGACCCCAGACCCGGAGTACCCAGCTGATGCCAGC < 41bp 0.811656820321878 0.491107496171408 NA NA prediction 0.623313640643757 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322329 chr2:233322328 synonymous SNV . 0 20 hm7G_associated_SNPs_7207 0 0 0 0 2 ALPI chr2:233322409 5'GT 233322409 Upstream 82bp 6980 chr3 49742457 49742457 1 + T G UCEC 49742458 + 49742438 49742478 41 GTTGGGGGGCCACTGCCCCTGCCCCGGCCCGGCTGGCTCAG GTTGGGGGGCCACTGCCCCGGCCCCGGCCCGGCTGGCTCAG < 41bp 0.811599508108838 0.481289209773042 NA NA prediction 0.623199016217675 Functional Loss - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742458 chr3:49742457 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_7208 0 0 1 0 1 RNF123 chr3:49742417 3'AG 49742417 Downstream 41bp 6981 chr16 29990752 29990752 1 + T G HNSC 29990753 + 29990733 29990773 41 CCTAGGATGGCACCCGAGGTGATCCTGGCCATGGATGAGGG CCTAGGATGGCACCCGAGGGGATCCTGGCCATGGATGAGGG < 41bp 0.81140900456807 0.492610713617973 NA NA prediction 0.622818009136139 Functional Loss - TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29990753 chr16:29990752 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7209 0 0 1 0 2 TAOK2 chr16:29990738 3'AG 29990738 Downstream 15bp 6982 chr16 29990752 29990752 1 + T G HNSC 29990753 + 29990733 29990773 41 CCTAGGATGGCACCCGAGGTGATCCTGGCCATGGATGAGGG CCTAGGATGGCACCCGAGGGGATCCTGGCCATGGATGAGGG < 41bp 0.81140900456807 0.492610713617973 NA NA prediction 0.622818009136139 Functional Loss - TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29990753 chr16:29990752 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7209 0 0 1 0 2 TAOK2 chr16:29990829 5'GT 29990829 Upstream 78bp 6983 chr11 124740088 124740088 1 + T G LUAD 124740089 + 124740069 124740109 41 TCATTCCTGCGCAGACCAGTGAATCAGGTGGTCCTGGCTGA TCATTCCTGCGCAGACCAGGGAATCAGGTGGTCCTGGCTGA < 41bp 0.817044855929722 0.506570631027861 NA NA prediction 0.620948449803722 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124740089 chr11:124740088 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_7210 0 0 0 0 1 ROBO3 chr11:124740061 3'AG 124740061 Downstream 28bp 6984 chr17 72341039 72341039 1 + T G LUSC 72341040 + 72341020 72341060 41 AAGAACATCTTGCAGGAGGTGCGGCAGGGCCGCCTGTTCAT AAGAACATCTTGCAGGAGGGGCGGCAGGGCCGCCTGTTCAT < 41bp 0.810461338900712 0.492414521963152 NA NA prediction 0.620922677801424 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72341040 chr17:72341039 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_7211 0 0 0 0 1 KIF19 chr17:72341094 5'GT 72341094 Upstream 56bp 6985 chr9 125143789 125143789 1 + T G GBM 125143790 + 125143770 125143810 41 ACCAGTTCTTCAAAACTTCTGGCAAGATGGGTCCTGGCTTC ACCAGTTCTTCAAAACTTCGGGCAAGATGGGTCCTGGCTTC < 41bp 0.81717463509228 0.506959517101105 NA NA prediction 0.62043023598235 Functional Loss - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125143790 chr9:125143789 synonymous SNV . 0 20 hm7G_associated_SNPs_7213 0 0 1 0 1 PTGS1 chr9:125143831 5'GT 125143831 Upstream 43bp 6986 chr3 184104344 184104344 1 + T G LGG 184104345 + 184104325 184104365 41 GCGGCCGGGGCCGAGGGGGTGCGGGCGCTGGGGGCTCCGGA GCGGCCGGGGCCGAGGGGGGGCGGGCGCTGGGGGCTCCGGA < 41bp 0.810173047065274 0.499865247465003 NA NA prediction 0.620346094130547 Functional Loss - CHRD ENSG00000090539 CDS Human protein_coding chr3:184104345 chr3:184104344 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7214 0 0 1 0 1 CHRD chr3:184104280 3'AG 184104280 Downstream 65bp 6987 chr3 14922119 14922119 1 + T G UCEC 14922120 + 14922100 14922140 41 CTTGTCATCGCACAGGAACTGCTATCTTCAGAGAAAGCGTG CTTGTCATCGCACAGGAACGGCTATCTTCAGAGAAAGCGTG < 41bp 0.810025224751837 0.490428280199004 NA NA prediction 0.620050449503674 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14922120 chr3:14922119 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7216 0 0 0 0 1 FGD5 chr3:14922079 3'AG 14922079 Downstream 41bp 6988 chr19 38896204 38896204 1 + T G rs117354953 38896205 + 38896185 38896225 41 CCTCAGAGATCAGTACCGCTGCCGCCGCTGCCTCCTCCTCA CCTCAGAGATCAGTACCGCGGCCGCCGCTGCCTCCTCCTCA < 41bp 0.80987153203886 0.492689426060524 NA NA prediction 0.619743064077719 Functional Loss - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38896205 chr19:38896204 nonsynonymous SNV 0.935 1 20 hm7G_associated_SNPs_7217 0 0 0 0 2 FAM98C chr19:38896159 3'AG 38896159 Downstream 46bp 6989 chr19 38896204 38896204 1 + T G rs117354953 38896205 + 38896185 38896225 41 CCTCAGAGATCAGTACCGCTGCCGCCGCTGCCTCCTCCTCA CCTCAGAGATCAGTACCGCGGCCGCCGCTGCCTCCTCCTCA < 41bp 0.80987153203886 0.492689426060524 NA NA prediction 0.619743064077719 Functional Loss - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38896205 chr19:38896204 nonsynonymous SNV 0.935 1 20 hm7G_associated_SNPs_7217 0 0 0 0 2 FAM98C chr19:38896275 5'GT 38896275 Upstream 72bp 6990 chr2 217293478 217293478 1 + T G UCEC 217293479 + 217293459 217293499 41 CCCAAGCTCGTGTCTAATCTGATGCCCTTTCAGAGAGCTGG CCCAAGCTCGTGTCTAATCGGATGCCCTTTCAGAGAGCTGG < 41bp 0.814570760417088 0.504870029826787 NA NA prediction 0.619401461180601 Functional Loss - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217293479 chr2:217293478 nonsynonymous SNV 0.744 2 20 hm7G_associated_SNPs_7218 0 0 1 1 1 SMARCAL1 chr2:217293505 5'GT 217293505 Upstream 28bp 6991 chr1 116932301 116932301 1 + T G THCA 116932302 + 116932282 116932322 41 GGTATCATCGTAGCCAATGTGCCGGAAGGTTTGCTGGCCAC GGTATCATCGTAGCCAATGGGCCGGAAGGTTTGCTGGCCAC < 41bp 0.813286569652144 0.503592781490119 NA NA prediction 0.619387576324049 Functional Loss - ATP1A1 ENSG00000163399 CDS Human protein_coding chr1:116932302 chr1:116932301 nonsynonymous SNV 0.932 5 20 hm7G_associated_SNPs_7219 1 0 1 0 1 ATP1A1 chr1:116932329 5'GT 116932329 Upstream 29bp 6992 chr17 26851891 26851891 1 + T G SKCM 26851892 + 26851872 26851912 41 GAGGAGATCCCAGTGGACGTGGCGGAGGCCGAGGCCTTCCT GAGGAGATCCCAGTGGACGGGGCGGAGGCCGAGGCCTTCCT < 41bp 0.8142654254241 0.50474018413771 NA NA prediction 0.619050482572779 Functional Loss - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851892 chr17:26851891 nonsynonymous SNV 0.069 2 20 hm7G_associated_SNPs_7221 0 0 0 0 1 FOXN1 chr17:26851985 5'GT 26851985 Upstream 95bp 6993 chr1 154209593 154209593 1 + T G LUAD 154209594 + 154209574 154209614 41 GGAACAACACTGGCCACTTTGAACCAGATGATGGGACGAGT GGAACAACACTGGCCACTTGGAACCAGATGATGGGACGAGT < 41bp 0.81102148698067 0.501635944402842 NA NA prediction 0.618771085155655 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154209594 chr1:154209593 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_7222 0 0 1 0 2 UBAP2L chr1:154209500 3'AG 154209500 Downstream 94bp 6994 chr1 154209593 154209593 1 + T G LUAD 154209594 + 154209574 154209614 41 GGAACAACACTGGCCACTTTGAACCAGATGATGGGACGAGT GGAACAACACTGGCCACTTGGAACCAGATGATGGGACGAGT < 41bp 0.81102148698067 0.501635944402842 NA NA prediction 0.618771085155655 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154209594 chr1:154209593 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_7222 0 0 1 0 2 UBAP2L chr1:154209612 5'GT 154209612 Upstream 20bp 6995 chr17 66352868 66352868 1 + T G SKCM 66352869 + 66352849 66352889 41 TTTATGAAAACCTCAACATTGTGGAGCAGCCGGTGAACTTG TTTATGAAAACCTCAACATGGTGGAGCAGCCGGTGAACTTG < 41bp 0.818024780865809 0.508656552562207 NA NA prediction 0.618736456607204 Functional Loss - ARSG ENSG00000141337 CDS Human protein_coding chr17:66352869 chr17:66352868 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_7223 0 0 1 0 2 ARSG chr17:66352808 3'AG 66352808 Downstream 61bp 6996 chr17 66352868 66352868 1 + T G SKCM 66352869 + 66352849 66352889 41 TTTATGAAAACCTCAACATTGTGGAGCAGCCGGTGAACTTG TTTATGAAAACCTCAACATGGTGGAGCAGCCGGTGAACTTG < 41bp 0.818024780865809 0.508656552562207 NA NA prediction 0.618736456607204 Functional Loss - ARSG ENSG00000141337 CDS Human protein_coding chr17:66352869 chr17:66352868 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_7223 0 0 1 0 2 ARSG chr17:66352945 5'GT 66352945 Upstream 78bp 6997 chr9 138667241 138667241 1 + T G COAD 138667242 + 138667222 138667262 41 GCCTGTGAAAGCCCCCTTCTGCTGCCTGCGGCTGGACAAGG GCCTGTGAAAGCCCCCTTCGGCTGCCTGCGGCTGGACAAGG < 41bp 0.809303917525557 0.488169673417277 NA NA prediction 0.618607835051114 Functional Loss - KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138667242 chr9:138667241 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7224 0 0 0 0 2 KCNT1 chr9:138667156 3'AG 138667156 Downstream 86bp 6998 chr9 138667241 138667241 1 + T G COAD 138667242 + 138667222 138667262 41 GCCTGTGAAAGCCCCCTTCTGCTGCCTGCGGCTGGACAAGG GCCTGTGAAAGCCCCCTTCGGCTGCCTGCGGCTGGACAAGG < 41bp 0.809303917525557 0.488169673417277 NA NA prediction 0.618607835051114 Functional Loss - KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138667242 chr9:138667241 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7224 0 0 0 0 2 KCNT1 chr9:138667261 5'GT 138667261 Upstream 21bp 6999 chr9 115600832 115600832 1 + T G BLCA 115600833 + 115600813 115600853 41 TACTCCACATGGAGCGCCTTGGAGGGTGAGCTGGCTGAACC TACTCCACATGGAGCGCCTGGGAGGGTGAGCTGGCTGAACC < 41bp 0.819660696222111 0.510541673004084 NA NA prediction 0.618238046436053 Functional Loss - SNX30 ENSG00000148158 CDS Human protein_coding chr9:115600833 chr9:115600832 nonsynonymous SNV 0.552 1 20 hm7G_associated_SNPs_7225 0 0 1 0 1 SNX30 chr9:115600778 3'AG 115600778 Downstream 55bp 7000 chr6 42985044 42985044 1 + T G TGCT 42985045 + 42985025 42985065 41 ACTGCTCTGGTGAAGACTATGAGACACTGCGTCAGATAGAT ACTGCTCTGGTGAAGACTAGGAGACACTGCGTCAGATAGAT < 41bp 0.81567791000291 0.506583433171978 NA NA prediction 0.618188953661865 Functional Loss - KLHDC3 ENSG00000124702 CDS Human protein_coding chr6:42985045 chr6:42985044 stopgain 0.998 1 20 hm7G_associated_SNPs_7226 0 0 1 0 1 KLHDC3 chr6:42985084 5'GT 42985084 Upstream 41bp 7001 chr11 125478108 125478108 1 + T G LUSC 125478109 + 125478089 125478129 41 AGTTGAATCCACAACAATTTGAAGTTCTTTTCCGGAGCGTC AGTTGAATCCACAACAATTGGAAGTTCTTTTCCGGAGCGTC < 41bp 0.815399492006264 0.506355642911116 NA NA prediction 0.618087698190295 Functional Loss - STT3A ENSG00000134910 CDS Human protein_coding chr11:125478109 chr11:125478108 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_7227 0 0 1 0 1 STT3A chr11:125478184 5'GT 125478184 Upstream 77bp 7002 chr16 28944271 28944271 1 + T G rs146795664 28944272 + 28944252 28944292 41 GTTTCGGACCTAGGTGGCCTGGGCTGTGGCCTGAAGAACAG GTTTCGGACCTAGGTGGCCGGGGCTGTGGCCTGAAGAACAG < 41bp 0.808944142965912 0.490238672962786 NA NA prediction 0.617888285931824 Functional Loss - CD19 ENSG00000177455 CDS Human protein_coding chr16:28944272 chr16:28944271 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7228 1 0 0 0 1 CD19 chr16:28944232 3'AG 28944232 Downstream 40bp 7003 chr22 50876662 50876662 1 + T G rs11555194 50876663 + 50876643 50876683 41 TCCAGCCCTTTGATGATGATGAGGACGAGGACATCTGGGAG TCCAGCCCTTTGATGATGAGGAGGACGAGGACATCTGGGAG < 41bp 0.8118278723315 0.502942158408706 NA NA prediction 0.617771427845587 Functional Loss - PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50876663 chr22:50876662 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_7229 0 0 1 0 2 PPP6R2 chr22:50876603 3'AG 50876603 Downstream 60bp 7004 chr22 50876662 50876662 1 + T G rs11555194 50876663 + 50876643 50876683 41 TCCAGCCCTTTGATGATGATGAGGACGAGGACATCTGGGAG TCCAGCCCTTTGATGATGAGGAGGACGAGGACATCTGGGAG < 41bp 0.8118278723315 0.502942158408706 NA NA prediction 0.617771427845587 Functional Loss - PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50876663 chr22:50876662 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_7229 0 0 1 0 2 PPP6R2 chr22:50876727 5'GT 50876727 Upstream 66bp 7005 chr11 124949017 124949017 1 + T G STAD 124949018 + 124948998 124949038 41 TCTTCCCCAGTGGGGTTTTTGGGGAGCGGCTTCCGCTCCGT TCTTCCCCAGTGGGGTTTTGGGGGAGCGGCTTCCGCTCCGT < 41bp 0.808839408389531 0.489638335078076 NA NA prediction 0.617678816779061 Functional Loss - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124949018 chr11:124949017 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_7230 0 0 0 0 1 SLC37A2 chr11:124949008 3'AG 124949008 Downstream 10bp 7006 chr17 4619917 4619917 1 + T G rs192983858 4619918 + 4619898 4619938 41 TTCACCGTGAGGATGCCCCTGCCCTCTGAGGGCCAGGGGGC TTCACCGTGAGGATGCCCCGGCCCTCTGAGGGCCAGGGGGC < 41bp 0.835638898422506 0.527223258212547 NA NA prediction 0.616831280419917 Functional Loss - ARRB2 ENSG00000141480 CDS Human protein_coding chr17:4619918 chr17:4619917 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_7231 0 0 1 0 1 ARRB2 chr17:4619966 5'GT 4619966 Upstream 50bp 7007 chr10 45938561 45938561 1 + T G UCEC 45938562 + 45938542 45938582 41 CCTGACCTATGCCTCCCTGTGCTTTCCCGAGGCCATCAAGG CCTGACCTATGCCTCCCTGGGCTTTCCCGAGGCCATCAAGG < 41bp 0.838809952980742 0.530437025014703 NA NA prediction 0.616745855932077 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938562 chr10:45938561 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_7232 0 0 1 0 1 ALOX5 chr10:45938486 3'AG 45938486 Downstream 76bp 7008 chr1 156761560 156761560 1 + T G SKCM 156761561 + 156761541 156761581 41 CCCAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAA CCCAGGAAATTGCCCCAGAGGCCTCCTTCATCGATGACGAA < 41bp 0.82549104579828 0.517178606688936 NA NA prediction 0.616624878218687 Functional Loss - PRCC ENSG00000143294 CDS Human protein_coding chr1:156761561 chr1:156761560 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7233 0 0 1 0 2 PRCC chr1:156761489 3'AG 156761489 Downstream 72bp 7009 chr1 156761560 156761560 1 + T G SKCM 156761561 + 156761541 156761581 41 CCCAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAA CCCAGGAAATTGCCCCAGAGGCCTCCTTCATCGATGACGAA < 41bp 0.82549104579828 0.517178606688936 NA NA prediction 0.616624878218687 Functional Loss - PRCC ENSG00000143294 CDS Human protein_coding chr1:156761561 chr1:156761560 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7233 0 0 1 0 2 PRCC chr1:156761584 5'GT 156761584 Upstream 25bp 7010 chr6 7862567 7862567 1 + T G LUAD 7862568 + 7862548 7862588 41 CCCCGAGCCGCAGGCCTGGTGGGCAGAGACGGCCCTTACGA CCCCGAGCCGCAGGCCTGGGGGGCAGAGACGGCCCTTACGA < 41bp 0.826137280348549 0.518166307895568 NA NA prediction 0.615941944905963 Functional Loss - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862568 chr6:7862567 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_7236 0 0 0 0 1 BMP6 chr6:7862534 3'AG 7862534 Downstream 34bp 7011 chr10 103917282 103917282 1 + T G COAD 103917283 + 103917263 103917303 41 AGTCCAGTGATGATGATGATGAGGAGGACCAAAAGAAACAG AGTCCAGTGATGATGATGAGGAGGAGGACCAAAAGAAACAG < 41bp 0.811065337132779 0.503335348975945 NA NA prediction 0.615459976313669 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917283 chr10:103917282 nonsynonymous SNV 0.712 0 20 hm7G_associated_SNPs_7238 0 0 1 0 3 NOLC1 chr10:103917188 3'AG 103917188 Downstream 95bp 7012 chr10 103917282 103917282 1 + T G COAD 103917283 + 103917263 103917303 41 AGTCCAGTGATGATGATGATGAGGAGGACCAAAAGAAACAG AGTCCAGTGATGATGATGAGGAGGAGGACCAAAAGAAACAG < 41bp 0.811065337132779 0.503335348975945 NA NA prediction 0.615459976313669 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917283 chr10:103917282 nonsynonymous SNV 0.712 0 20 hm7G_associated_SNPs_7238 0 0 1 0 3 NOLC1 chr10:103917206 3'AG 103917206 Downstream 77bp 7013 chr10 103917282 103917282 1 + T G COAD 103917283 + 103917263 103917303 41 AGTCCAGTGATGATGATGATGAGGAGGACCAAAAGAAACAG AGTCCAGTGATGATGATGAGGAGGAGGACCAAAAGAAACAG < 41bp 0.811065337132779 0.503335348975945 NA NA prediction 0.615459976313669 Functional Loss - NOLC1 ENSG00000166197 CDS Human protein_coding chr10:103917283 chr10:103917282 nonsynonymous SNV 0.712 0 20 hm7G_associated_SNPs_7238 0 0 1 0 3 NOLC1 chr10:103917312 5'GT 103917312 Upstream 31bp 7014 chr3 38039036 38039036 1 + T G BRCA 38039037 + 38039017 38039057 41 GTGGTCGTGCACAGATTGGTGTGGTGGATGATGAGGCCAAA GTGGTCGTGCACAGATTGGGGTGGTGGATGATGAGGCCAAA < 41bp 0.820803043970941 0.513185046001496 NA NA prediction 0.61523599593889 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38039037 chr3:38039036 synonymous SNV . 0 20 hm7G_associated_SNPs_7239 0 0 0 0 1 VILL chr3:38038974 3'AG 38038974 Downstream 63bp 7015 chr10 43596135 43596135 1 + T G SKCM 43596136 + 43596116 43596156 41 CTCTACCTTAACCGGAGCCTGGACCATAGCTCCTGGGAGAA CTCTACCTTAACCGGAGCCGGGACCATAGCTCCTGGGAGAA < 41bp 0.8340983284497 0.52650375598072 NA NA prediction 0.615189144937959 Functional Loss - RET ENSG00000165731 CDS Human protein_coding chr10:43596136 chr10:43596135 nonsynonymous SNV 0.919 5 20 hm7G_associated_SNPs_7240 0 0 0 0 1 RET chr10:43596170 5'GT 43596170 Upstream 36bp 7016 chr17 18396080 18396080 1 + T G SKCM 18396081 + 18396061 18396101 41 CCCGTTTTGATGAGAATGCTGTGGTCCGTAACACCCAGATC CCCGTTTTGATGAGAATGCGGTGGTCCGTAACACCCAGATC < 41bp 0.807264409424539 0.496289877046235 NA NA prediction 0.614528818849078 Functional Loss - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18396081 chr17:18396080 synonymous SNV . 0 20 hm7G_associated_SNPs_7242 0 0 0 0 2 LGALS9C chr17:18396011 3'AG 18396011 Downstream 70bp 7017 chr17 18396080 18396080 1 + T G SKCM 18396081 + 18396061 18396101 41 CCCGTTTTGATGAGAATGCTGTGGTCCGTAACACCCAGATC CCCGTTTTGATGAGAATGCGGTGGTCCGTAACACCCAGATC < 41bp 0.807264409424539 0.496289877046235 NA NA prediction 0.614528818849078 Functional Loss - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18396081 chr17:18396080 synonymous SNV . 0 20 hm7G_associated_SNPs_7242 0 0 0 0 2 LGALS9C chr17:18396173 5'GT 18396173 Upstream 94bp 7018 chr5 156671337 156671337 1 + T G ESCA 156671338 + 156671318 156671358 41 GAGCAGGCCCCCATCTGCCTGGTGTTTGAGTTCATGGAGCA GAGCAGGCCCCCATCTGCCGGGTGTTTGAGTTCATGGAGCA < 41bp 0.822787754160085 0.515535490426031 NA NA prediction 0.614504527468108 Functional Loss - ITK ENSG00000113263 CDS Human protein_coding chr5:156671338 chr5:156671337 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7243 0 0 0 0 1 ITK chr5:156671272 3'AG 156671272 Downstream 66bp 7019 chr15 25222131 25222131 1 + T G STAD 25222132 + 25222112 25222152 41 CAATTCCCCAGGCCCCTGCTGGATTGGCAGGCCCTGTCCGA CAATTCCCCAGGCCCCTGCGGGATTGGCAGGCCCTGTCCGA < 41bp 0.826505629367072 0.51934316052385 NA NA prediction 0.614324937686444 Functional Loss - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222132 chr15:25222131 synonymous SNV . 0 20 hm7G_associated_SNPs_7244 0 0 1 0 1 SNRPN chr15:25222176 5'GT 25222176 Upstream 46bp 7020 chr11 125299885 125299885 1 + T G LUSC 125299886 + 125299866 125299906 41 AATGCCCGGAGGCGCATCCTGCAGCCCATGCTTGATGCCAG AATGCCCGGAGGCGCATCCGGCAGCCCATGCTTGATGCCAG < 41bp 0.825128663697204 0.517966223748217 NA NA prediction 0.614324879897973 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125299886 chr11:125299885 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7245 0 0 0 0 1 PKNOX2 chr11:125299859 3'AG 125299859 Downstream 27bp 7021 chr2 74900620 74900620 1 + T G UCEC 74900621 + 74900601 74900641 41 GCCACTGTGAAAAACTACCTGGGGACGGAGCCAATTATCAC GCCACTGTGAAAAACTACCGGGGGACGGAGCCAATTATCAC < 41bp 0.807147251693453 0.487587701397446 NA NA prediction 0.614294503386906 Functional Loss - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74900621 chr2:74900620 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_7246 0 0 0 0 2 SEMA4F chr2:74900584 3'AG 74900584 Downstream 37bp 7022 chr2 74900620 74900620 1 + T G UCEC 74900621 + 74900601 74900641 41 GCCACTGTGAAAAACTACCTGGGGACGGAGCCAATTATCAC GCCACTGTGAAAAACTACCGGGGGACGGAGCCAATTATCAC < 41bp 0.807147251693453 0.487587701397446 NA NA prediction 0.614294503386906 Functional Loss - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74900621 chr2:74900620 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_7246 0 0 0 0 2 SEMA4F chr2:74900703 5'GT 74900703 Upstream 84bp 7023 chr16 67318630 67318630 1 + T G rs61738731 67318631 + 67318611 67318651 41 TGCAGGCCTTGACGTGGGCTGAGGAGGGGCAGCGAGTGTTG TGCAGGCCTTGACGTGGGCGGAGGAGGGGCAGCGAGTGTTG < 41bp 0.819224816845627 0.512200848663625 NA NA prediction 0.614047936364003 Functional Loss - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67318631 chr16:67318630 synonymous SNV . 0 20 hm7G_associated_SNPs_7248 0 0 1 0 1 PLEKHG4 chr16:67318616 3'AG 67318616 Downstream 15bp 7024 chrX 153641878 153641878 1 + T G PAAD 153641879 + 153641859 153641899 41 CACTCCCACTTCTTCAGCTTGGGCAAGTGTGTGCCTGTGTG CACTCCCACTTCTTCAGCTGGGGCAAGTGTGTGCCTGTGTG < 41bp 0.813113952465651 0.506098333447956 NA NA prediction 0.61403123803539 Functional Loss - TAZ ENSG00000102125 CDS Human protein_coding chrX:153641879 chrX:153641878 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7249 0 0 1 0 2 TAZ chrX:153641819 3'AG 153641819 Downstream 60bp 7025 chrX 153641878 153641878 1 + T G PAAD 153641879 + 153641859 153641899 41 CACTCCCACTTCTTCAGCTTGGGCAAGTGTGTGCCTGTGTG CACTCCCACTTCTTCAGCTGGGGCAAGTGTGTGCCTGTGTG < 41bp 0.813113952465651 0.506098333447956 NA NA prediction 0.61403123803539 Functional Loss - TAZ ENSG00000102125 CDS Human protein_coding chrX:153641879 chrX:153641878 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7249 0 0 1 0 2 TAZ chrX:153641904 5'GT 153641904 Upstream 27bp 7026 chr16 24921642 24921642 1 + T G rs371993218 24921643 + 24921623 24921663 41 TTAGGTCAGCCACCTGACCTGGTTTACTCGTCACGACCCCG TTAGGTCAGCCACCTGACCGGGTTTACTCGTCACGACCCCG < 41bp 0.828913441230658 0.522181981076894 NA NA prediction 0.613462920307527 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24921643 chr16:24921642 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7251 0 0 0 0 1 SLC5A11 chr16:24921627 3'AG 24921627 Downstream 16bp 7027 chr18 33263520 33263520 1 + T G COAD 33263521 + 33263501 33263541 41 GCCCATTGTGAGTGTACAGTGGGATGGCTGGAGCCTCTCTT GCCCATTGTGAGTGTACAGGGGGATGGCTGGAGCCTCTCTT < 41bp 0.808054603113874 0.501378179839843 NA NA prediction 0.613352846548062 Functional Loss - GALNT1 ENSG00000141429 CDS Human protein_coding chr18:33263521 chr18:33263520 nonsynonymous SNV 0.924 0 20 hm7G_associated_SNPs_7253 0 0 1 0 1 GALNT1 chr18:33263562 5'GT 33263562 Upstream 43bp 7028 chr21 42811675 42811675 1 + T G LUSC 42811676 + 42811656 42811696 41 AGTCATGAGCTAATCACCCTGGAGATCAGCTCCCGAGATGT AGTCATGAGCTAATCACCCGGGAGATCAGCTCCCGAGATGT < 41bp 0.806674540499127 0.480198534986394 NA NA prediction 0.613349080998253 Functional Loss - MX1 ENSG00000157601 CDS Human protein_coding chr21:42811676 chr21:42811675 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_7254 0 0 0 0 1 MX1 chr21:42811621 3'AG 42811621 Downstream 55bp 7029 chr19 17379839 17379839 1 + T G GBM 17379840 + 17379820 17379860 41 GGCCCTAAGTCCTGGCAGGTGCCCCCGCCAGCCCCTGAGGT GGCCCTAAGTCCTGGCAGGGGCCCCCGCCAGCCCCTGAGGT < 41bp 0.806424691440087 0.487729667173404 NA NA prediction 0.612849382880174 Functional Loss - BABAM1 ENSG00000105393;ENSG00000269307 CDS Human other chr19:17379840 chr19:17379839 nonsynonymous SNV 0.337 2 20 hm7G_associated_SNPs_7256 0 0 1 0 1 BABAM1 chr19:17379900 5'GT 17379900 Upstream 62bp 7030 chr19 38024271 38024271 1 + T G rs12977460 38024272 + 38024252 38024292 41 AGGAAGAAGCACCATGGATTGGTGAGGCAGCATGCCCGGGC AGGAAGAAGCACCATGGATGGGTGAGGCAGCATGCCCGGGC < 41bp 0.810970215504423 0.504576187563121 NA NA prediction 0.612788055882604 Functional Loss - ZNF793 ENSG00000188227 CDS Human protein_coding chr19:38024272 chr19:38024271 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_7257 0 0 1 0 2 ZNF793 chr19:38024210 3'AG 38024210 Downstream 62bp 7031 chr19 38024271 38024271 1 + T G rs12977460 38024272 + 38024252 38024292 41 AGGAAGAAGCACCATGGATTGGTGAGGCAGCATGCCCGGGC AGGAAGAAGCACCATGGATGGGTGAGGCAGCATGCCCGGGC < 41bp 0.810970215504423 0.504576187563121 NA NA prediction 0.612788055882604 Functional Loss - ZNF793 ENSG00000188227 CDS Human protein_coding chr19:38024272 chr19:38024271 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_7257 0 0 1 0 2 ZNF793 chr19:38024305 5'GT 38024305 Upstream 35bp 7032 chr17 42429791 42429791 1 + T G SKCM 42429792 + 42429772 42429812 41 CGATCCTGCGAGAAGGAAGTGGTCTCTGCCCAGCCTGCCAC CGATCCTGCGAGAAGGAAGGGGTCTCTGCCCAGCCTGCCAC < 41bp 0.806327734655258 0.484254284306562 NA NA prediction 0.612655469310516 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42429792 chr17:42429791 nonsynonymous SNV 0.016 1 20 hm7G_associated_SNPs_7259 0 0 1 0 1 GRN chr17:42429709 3'AG 42429709 Downstream 83bp 7033 chr10 93572894 93572894 1 + T G OV 93572895 + 93572875 93572915 41 GACATGGTGCAGACCCCAATGCTCGAGATAATTGGAATTAT GACATGGTGCAGACCCCAAGGCTCGAGATAATTGGAATTAT < 41bp 0.806728365232416 0.500413336211886 NA NA prediction 0.61263005804106 Functional Loss - TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93572895 chr10:93572894 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7260 0 0 1 0 1 TNKS2 chr10:93572964 5'GT 93572964 Upstream 71bp 7034 chr19 1270962 1270962 1 + T G LUAD 1270963 + 1270943 1270983 41 ATGAAGGCAAACTTTTTGTTGGAGGGCTGAGTTTTGACACC ATGAAGGCAAACTTTTTGTGGGAGGGCTGAGTTTTGACACC < 41bp 0.830023131492773 0.523782097283718 NA NA prediction 0.612482068418109 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1270963 chr19:1270962 synonymous SNV . 0 20 hm7G_associated_SNPs_7261 0 0 1 0 2 CIRBP chr19:1270927 3'AG 1270927 Downstream 36bp 7035 chr19 1270962 1270962 1 + T G LUAD 1270963 + 1270943 1270983 41 ATGAAGGCAAACTTTTTGTTGGAGGGCTGAGTTTTGACACC ATGAAGGCAAACTTTTTGTGGGAGGGCTGAGTTTTGACACC < 41bp 0.830023131492773 0.523782097283718 NA NA prediction 0.612482068418109 Functional Loss - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1270963 chr19:1270962 synonymous SNV . 0 20 hm7G_associated_SNPs_7261 0 0 1 0 2 CIRBP chr19:1271035 5'GT 1271035 Upstream 74bp 7036 chr1 215777531 215777531 1 + T G HNSC 215777532 + 215777512 215777552 41 AGCTCTGGAGCAGTACGAGTGATTGTACAACACCCAGAGAC AGCTCTGGAGCAGTACGAGGGATTGTACAACACCCAGAGAC < 41bp 0.806356229549499 0.500117904729898 NA NA prediction 0.612476649639202 Functional Loss - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215777532 chr1:215777531 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7262 0 0 1 0 1 KCTD3 chr1:215777474 3'AG 215777474 Downstream 58bp 7037 chr11 77918623 77918623 1 + T G PRAD 77918624 + 77918604 77918644 41 GAGAACAACTCACAGCCCCTGATGACCAAGCTGCAGTGGCT GAGAACAACTCACAGCCCCGGATGACCAAGCTGCAGTGGCT < 41bp 0.806089075511192 0.488384360589945 NA NA prediction 0.612178151022383 Functional Loss - USP35 ENSG00000118369 CDS Human protein_coding chr11:77918624 chr11:77918623 nonsynonymous SNV 0.890 3 20 hm7G_associated_SNPs_7263 0 0 0 0 2 USP35 chr11:77918576 3'AG 77918576 Downstream 48bp 7038 chr11 77918623 77918623 1 + T G PRAD 77918624 + 77918604 77918644 41 GAGAACAACTCACAGCCCCTGATGACCAAGCTGCAGTGGCT GAGAACAACTCACAGCCCCGGATGACCAAGCTGCAGTGGCT < 41bp 0.806089075511192 0.488384360589945 NA NA prediction 0.612178151022383 Functional Loss - USP35 ENSG00000118369 CDS Human protein_coding chr11:77918624 chr11:77918623 nonsynonymous SNV 0.890 3 20 hm7G_associated_SNPs_7263 0 0 0 0 2 USP35 chr11:77918669 5'GT 77918669 Upstream 47bp 7039 chr22 19707341 19707341 1 + T G LUSC 19707342 + 19707322 19707362 41 TGTGCAGGTGAGTCAGGCCTGGGGAAGTCCACACTGGTCCA TGTGCAGGTGAGTCAGGCCGGGGGAAGTCCACACTGGTCCA < 41bp 0.814357840948261 0.508520691116318 NA NA prediction 0.611674299663886 Functional Loss - SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707342 chr22:19707341 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7264 0 0 1 0 1 SEPT5 chr22:19707329 3'AG 19707329 Downstream 13bp 7040 chr9 96415567 96415567 1 + T G LIHC 96415568 + 96415548 96415588 41 GCCCAAAGTGACCAAGTACTGCCTAATCTGCGTGAAGGACA GCCCAAAGTGACCAAGTACGGCCTAATCTGCGTGAAGGACA < 41bp 0.805813604188896 0.485288230119755 NA NA prediction 0.611627208377793 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96415568 chr9:96415567 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_7265 0 0 1 0 1 PHF2 chr9:96415647 5'GT 96415647 Upstream 81bp 7041 chr22 45929018 45929018 1 + T G SKCM 45929019 + 45928999 45929039 41 TGCTTCGTGGGCTACCAGCTGCTGTCTGATGGTGTCTCCTG TGCTTCGTGGGCTACCAGCGGCTGTCTGATGGTGTCTCCTG < 41bp 0.805487921316244 0.478459205174265 NA NA prediction 0.610975842632487 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929019 chr22:45929018 nonsynonymous SNV 0.895 4 20 hm7G_associated_SNPs_7268 0 0 1 0 2 FBLN1 chr22:45928943 3'AG 45928943 Downstream 76bp 7042 chr22 45929018 45929018 1 + T G SKCM 45929019 + 45928999 45929039 41 TGCTTCGTGGGCTACCAGCTGCTGTCTGATGGTGTCTCCTG TGCTTCGTGGGCTACCAGCGGCTGTCTGATGGTGTCTCCTG < 41bp 0.805487921316244 0.478459205174265 NA NA prediction 0.610975842632487 Functional Loss - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929019 chr22:45929018 nonsynonymous SNV 0.895 4 20 hm7G_associated_SNPs_7268 0 0 1 0 2 FBLN1 chr22:45929044 5'GT 45929044 Upstream 27bp 7043 chr17 27061853 27061853 1 + T G CESC 27061854 + 27061834 27061874 41 CTGGAGGAGGAGACCATCCTGCACTTCTTCGTGCAGATCCT CTGGAGGAGGAGACCATCCGGCACTTCTTCGTGCAGATCCT < 41bp 0.833194657657543 0.527770521038379 NA NA prediction 0.610848273238326 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27061854 chr17:27061853 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_7269 0 0 1 0 1 NEK8 chr17:27061790 3'AG 27061790 Downstream 64bp 7044 chr17 41141501 41141501 1 + T G SKCM 41141502 + 41141482 41141522 41 GAGTCAAAGAACAGTTGGTTGAGCAACTGAAAACTCAGATC GAGTCAAAGAACAGTTGGTGGAGCAACTGAAAACTCAGATC < 41bp 0.824656949839399 0.519278479608883 NA NA prediction 0.610756940461032 Functional Loss - RUNDC1 ENSG00000198863 CDS Human protein_coding chr17:41141502 chr17:41141501 synonymous SNV . 0 20 hm7G_associated_SNPs_7270 0 0 1 0 1 RUNDC1 chr17:41141556 5'GT 41141556 Upstream 56bp 7045 chr12 31246211 31246211 1 + T G UCEC 31246212 + 31246192 31246232 41 GCCAAGAACCTGATGTACCTGAAGCAGATCCTGTATTTGCT GCCAAGAACCTGATGTACCGGAAGCAGATCCTGTATTTGCT < 41bp 0.809266439114563 0.503899152490528 NA NA prediction 0.610734573248069 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31246212 chr12:31246211 nonsynonymous SNV 0.951 3 20 hm7G_associated_SNPs_7271 0 0 0 0 2 DDX11 chr12:31246179 3'AG 31246179 Downstream 33bp 7046 chr12 31246211 31246211 1 + T G UCEC 31246212 + 31246192 31246232 41 GCCAAGAACCTGATGTACCTGAAGCAGATCCTGTATTTGCT GCCAAGAACCTGATGTACCGGAAGCAGATCCTGTATTTGCT < 41bp 0.809266439114563 0.503899152490528 NA NA prediction 0.610734573248069 Functional Loss - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31246212 chr12:31246211 nonsynonymous SNV 0.951 3 20 hm7G_associated_SNPs_7271 0 0 0 0 2 DDX11 chr12:31246258 5'GT 31246258 Upstream 48bp 7047 chr9 131559481 131559481 1 + T G STAD 131559482 + 131559462 131559502 41 CGGTGGCCCGGAACCGGAGTGGGGTCACAAATGTGAGTGCC CGGTGGCCCGGAACCGGAGGGGGGTCACAAATGTGAGTGCC < 41bp 0.828610385190125 0.523315725843959 NA NA prediction 0.610589318692332 Functional Loss - TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131559482 chr9:131559481 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_7272 0 0 1 0 1 TBC1D13 chr9:131559493 5'GT 131559493 Upstream 13bp 7048 chr20 34130099 34130099 1 + T G STAD 34130100 + 34130080 34130120 41 GTCAGTGGCCTTCTCATGCTGCTACTGTTCCTGTCCGAGCT GTCAGTGGCCTTCTCATGCGGCTACTGTTCCTGTCCGAGCT < 41bp 0.819683708505879 0.51443452473023 NA NA prediction 0.610498367551298 Functional Loss - ERGIC3 ENSG00000125991 CDS Human protein_coding chr20:34130100 chr20:34130099 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_7273 0 0 1 0 2 ERGIC3 chr20:34130072 3'AG 34130072 Downstream 28bp 7049 chr20 34130099 34130099 1 + T G STAD 34130100 + 34130080 34130120 41 GTCAGTGGCCTTCTCATGCTGCTACTGTTCCTGTCCGAGCT GTCAGTGGCCTTCTCATGCGGCTACTGTTCCTGTCCGAGCT < 41bp 0.819683708505879 0.51443452473023 NA NA prediction 0.610498367551298 Functional Loss - ERGIC3 ENSG00000125991 CDS Human protein_coding chr20:34130100 chr20:34130099 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_7273 0 0 1 0 2 ERGIC3 chr20:34130142 5'GT 34130142 Upstream 44bp 7050 chr20 37182575 37182575 1 + T G BRCA 37182576 + 37182556 37182596 41 TTGCTTATGAAATACACCTTGAGCAACAGAGTGAGGAGGAA TTGCTTATGAAATACACCTGGAGCAACAGAGTGAGGAGGAA < 41bp 0.805097636650637 0.499197735973927 NA NA prediction 0.610195273301274 Functional Loss - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37182576 chr20:37182575 synonymous SNV . 0 20 hm7G_associated_SNPs_7274 0 0 1 0 1 RALGAPB chr20:37182510 3'AG 37182510 Downstream 66bp 7051 chr8 143558633 143558633 1 + T G LIHC 143558634 + 143558614 143558654 41 GTGCAACAACTCTGCCGTGTGCCCAGGTGGGTGGGACCTTG GTGCAACAACTCTGCCGTGGGCCCAGGTGGGTGGGACCTTG < 41bp 0.822662090227519 0.51772715427619 NA NA prediction 0.609869871902658 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558634 chr8:143558633 nonsynonymous SNV 0.881 4 20 hm7G_associated_SNPs_7276 0 0 0 0 1 ADGRB1 chr8:143558639 5'GT 143558639 Upstream 7bp 7052 chr1 156618366 156618366 1 + T G SKCM 156618367 + 156618347 156618387 41 CTTCTCCACCCAGGAGAACTGTTCCTGGGTGACCCTCCAGA CTTCTCCACCCAGGAGAACGGTTCCTGGGTGACCCTCCAGA < 41bp 0.804931353255382 0.4946570206472 NA NA prediction 0.609862706510764 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618367 chr1:156618366 nonsynonymous SNV 0.573 3 20 hm7G_associated_SNPs_7277 0 0 0 0 1 BCAN chr1:156618360 3'AG 156618360 Downstream 7bp 7053 chr20 44747004 44747004 1 + T G rs113207193 44747005 + 44746985 44747025 41 GGTTCGTCTGCCTCTGCAGTGCGTCCTCTGGGGCTGCTTGC GGTTCGTCTGCCTCTGCAGGGCGTCCTCTGGGGCTGCTTGC < 41bp 0.815768288708174 0.510956698022604 NA NA prediction 0.60962318137114 Functional Loss - CD40 ENSG00000101017 CDS Human protein_coding chr20:44747005 chr20:44747004 nonsynonymous SNV 0.007 3 20 hm7G_associated_SNPs_7278 0 0 1 0 1 CD40 chr20:44747033 5'GT 44747033 Upstream 30bp 7054 chr19 36593915 36593915 1 + T G rs61741470 36593916 + 36593896 36593936 41 TCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCC TCTCCAGAGGTCAAGCTCAGGGACCGAGGCGGAAGCCAGCC < 41bp 0.804809889073284 0.484158460144149 NA NA prediction 0.609619778146568 Functional Loss - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593916 chr19:36593915 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7279 2 0 1 0 2 WDR62 chr19:36593850 3'AG 36593850 Downstream 66bp 7055 chr19 36593915 36593915 1 + T G rs61741470 36593916 + 36593896 36593936 41 TCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCC TCTCCAGAGGTCAAGCTCAGGGACCGAGGCGGAAGCCAGCC < 41bp 0.804809889073284 0.484158460144149 NA NA prediction 0.609619778146568 Functional Loss - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36593916 chr19:36593915 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7279 2 0 1 0 2 WDR62 chr19:36593976 5'GT 36593976 Upstream 62bp 7056 chr7 31117638 31117638 1 + T G ACC 31117639 + 31117619 31117659 41 GTGGGACAACATCACGTGTTGGAAGCCCGCCCATGTGGGTG GTGGGACAACATCACGTGTGGGAAGCCCGCCCATGTGGGTG < 41bp 0.804732764835488 0.475499591077671 NA NA prediction 0.609465529670977 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31117639 chr7:31117638 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_7280 0 0 0 0 2 ADCYAP1R1 chr7:31117606 3'AG 31117606 Downstream 33bp 7057 chr7 31117638 31117638 1 + T G ACC 31117639 + 31117619 31117659 41 GTGGGACAACATCACGTGTTGGAAGCCCGCCCATGTGGGTG GTGGGACAACATCACGTGTGGGAAGCCCGCCCATGTGGGTG < 41bp 0.804732764835488 0.475499591077671 NA NA prediction 0.609465529670977 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31117639 chr7:31117638 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_7280 0 0 0 0 2 ADCYAP1R1 chr7:31117713 5'GT 31117713 Upstream 76bp 7058 chr16 68100519 68100519 1 + T G rs2285911 68100520 + 68100500 68100540 41 TAGAGAGGACTGGCATTGCTGCCATCGCAGTTCATGGGAGG TAGAGAGGACTGGCATTGCGGCCATCGCAGTTCATGGGAGG < 41bp 0.838605445826969 0.534115998927128 NA NA prediction 0.608978893799683 Functional Loss - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68100520 chr16:68100519 synonymous SNV . 0 20 hm7G_associated_SNPs_7281 0 0 1 0 2 DUS2 chr16:68100469 3'AG 68100469 Downstream 51bp 7059 chr16 68100519 68100519 1 + T G rs2285911 68100520 + 68100500 68100540 41 TAGAGAGGACTGGCATTGCTGCCATCGCAGTTCATGGGAGG TAGAGAGGACTGGCATTGCGGCCATCGCAGTTCATGGGAGG < 41bp 0.838605445826969 0.534115998927128 NA NA prediction 0.608978893799683 Functional Loss - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68100520 chr16:68100519 synonymous SNV . 0 20 hm7G_associated_SNPs_7281 0 0 1 0 2 DUS2 chr16:68100539 5'GT 68100539 Upstream 21bp 7060 chr3 51679118 51679118 1 + T G SKCM 51679119 + 51679099 51679139 41 CCTGGAACCCTTGCCATGATGCCCAGGCAGTATGTCGGGTA CCTGGAACCCTTGCCATGAGGCCCAGGCAGTATGTCGGGTA < 41bp 0.831770666776484 0.527302100272265 NA NA prediction 0.608937133008438 Functional Loss - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51679119 chr3:51679118 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7282 0 0 0 0 1 RAD54L2 chr3:51679040 3'AG 51679040 Downstream 79bp 7061 chr6 348192 348192 1 + T G COAD 348193 + 348173 348213 41 GAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCTGTGC GAGGATGCCCTGCACACCGGGCGTGCTGGGAGATCCTGTGC < 41bp 0.804380415611379 0.479777441255237 NA NA prediction 0.608760831222757 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348193 chr6:348192 nonsynonymous SNV 0.806 5 20 hm7G_associated_SNPs_7283 0 0 1 0 2 DUSP22 chr6:348103 3'AG 348103 Downstream 90bp 7062 chr6 348192 348192 1 + T G COAD 348193 + 348173 348213 41 GAGGATGCCCTGCACACCGTGCGTGCTGGGAGATCCTGTGC GAGGATGCCCTGCACACCGGGCGTGCTGGGAGATCCTGTGC < 41bp 0.804380415611379 0.479777441255237 NA NA prediction 0.608760831222757 Functional Loss - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348193 chr6:348192 nonsynonymous SNV 0.806 5 20 hm7G_associated_SNPs_7283 0 0 1 0 2 DUSP22 chr6:348274 5'GT 348274 Upstream 83bp 7063 chr22 51044277 51044277 1 + T G BRCA 51044278 + 51044258 51044298 41 AAGCGGAGCCCCTGCTGGGTGGAGCGCTTTGACGTGCAGTT AAGCGGAGCCCCTGCTGGGGGGAGCGCTTTGACGTGCAGTT < 41bp 0.804377307400979 0.48519425422808 NA NA prediction 0.608754614801958 Functional Loss - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044278 chr22:51044277 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7284 0 0 0 0 2 MAPK8IP2 chr22:51044253 3'AG 51044253 Downstream 25bp 7064 chr22 51044277 51044277 1 + T G BRCA 51044278 + 51044258 51044298 41 AAGCGGAGCCCCTGCTGGGTGGAGCGCTTTGACGTGCAGTT AAGCGGAGCCCCTGCTGGGGGGAGCGCTTTGACGTGCAGTT < 41bp 0.804377307400979 0.48519425422808 NA NA prediction 0.608754614801958 Functional Loss - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044278 chr22:51044277 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7284 0 0 0 0 2 MAPK8IP2 chr22:51044362 5'GT 51044362 Upstream 86bp 7065 chr22 39482342 39482342 1 + T G SKCM 39482343 + 39482323 39482363 41 GAGCTGTGCTTCCTGGACGTGATTCCCTTTTGGAAGCTGGA GAGCTGTGCTTCCTGGACGGGATTCCCTTTTGGAAGCTGGA < 41bp 0.804360023236489 0.489424438707577 NA NA prediction 0.608720046472979 Functional Loss - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39482343 chr22:39482342 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_7286 0 0 0 0 1 APOBEC3G chr22:39482284 3'AG 39482284 Downstream 59bp 7066 chr12 133196643 133196643 1 + T G LUAD 133196644 + 133196624 133196664 41 CCCTCCAAGACCTGCGAGGTGTTCGGCTGGTGCCCGGTGGA CCCTCCAAGACCTGCGAGGGGTTCGGCTGGTGCCCGGTGGA < 41bp 0.821219541477555 0.517023461187133 NA NA prediction 0.608392160580845 Functional Loss - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196644 chr12:133196643 nonsynonymous SNV 0.418 4 20 hm7G_associated_SNPs_7287 0 0 0 0 3 P2RX2 chr12:133196586 3'AG 133196586 Downstream 58bp 7067 chr12 133196643 133196643 1 + T G LUAD 133196644 + 133196624 133196664 41 CCCTCCAAGACCTGCGAGGTGTTCGGCTGGTGCCCGGTGGA CCCTCCAAGACCTGCGAGGGGTTCGGCTGGTGCCCGGTGGA < 41bp 0.821219541477555 0.517023461187133 NA NA prediction 0.608392160580845 Functional Loss - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196644 chr12:133196643 nonsynonymous SNV 0.418 4 20 hm7G_associated_SNPs_7287 0 0 0 0 3 P2RX2 chr12:133196621 3'AG 133196621 Downstream 23bp 7068 chr12 133196643 133196643 1 + T G LUAD 133196644 + 133196624 133196664 41 CCCTCCAAGACCTGCGAGGTGTTCGGCTGGTGCCCGGTGGA CCCTCCAAGACCTGCGAGGGGTTCGGCTGGTGCCCGGTGGA < 41bp 0.821219541477555 0.517023461187133 NA NA prediction 0.608392160580845 Functional Loss - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196644 chr12:133196643 nonsynonymous SNV 0.418 4 20 hm7G_associated_SNPs_7287 0 0 0 0 3 P2RX2 chr12:133196682 5'GT 133196682 Upstream 40bp 7069 chrX 128926448 128926448 1 + T G COAD 128926449 + 128926429 128926469 41 GACCACGACTCGCTGAAACTGCAGGTAAGATCAGCATCCGG GACCACGACTCGCTGAAACGGCAGGTAAGATCAGCATCCGG < 41bp 0.803931960388968 0.489131166309886 NA NA prediction 0.607863920777937 Functional Loss - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926449 chrX:128926448 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7288 0 0 0 0 1 SASH3 chrX:128926452 5'GT 128926452 Upstream 5bp 7070 chr13 78293676 78293676 1 + T G UCEC 78293677 + 78293657 78293697 41 TTTTTTTAAGGTTATACATTGGCTCTTCAAAGACGTTCACC TTTTTTTAAGGTTATACATGGGCTCTTCAAAGACGTTCACC < 41bp 0.811351549692706 0.507425227679899 NA NA prediction 0.607852644025612 Functional Loss - SLAIN1 ENSG00000139737 CDS Human protein_coding chr13:78293677 chr13:78293676 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_7289 0 0 1 0 1 SLAIN1 chr13:78293667 3'AG 78293667 Downstream 10bp 7071 chr1 183105651 183105651 1 + T G HNSC 183105652 + 183105632 183105672 41 AGCAGGCCCTGGGCAGTGCTGCGGCGGATGCCACAGAGGCC AGCAGGCCCTGGGCAGTGCGGCGGCGGATGCCACAGAGGCC < 41bp 0.82467064946079 0.520754837373255 NA NA prediction 0.607831624175069 Functional Loss - LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183105652 chr1:183105651 synonymous SNV . 0 20 hm7G_associated_SNPs_7290 0 0 1 0 1 LAMC1 chr1:183105720 5'GT 183105720 Upstream 70bp 7072 chr14 24770062 24770062 1 + T G rs115048127 24770063 + 24770043 24770083 41 CCCGTGGTTCCCAATCATCTGGTAAGTATTACAAGAGGAAA CCCGTGGTTCCCAATCATCGGGTAAGTATTACAAGAGGAAA < 41bp 0.803425532310908 0.497839574203721 NA NA prediction 0.606851064621815 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24770063 chr14:24770062 synonymous SNV . 0 20 hm7G_associated_SNPs_7292 0 0 0 0 1 NOP9 chr14:24770063 5'GT 24770063 Upstream 2bp 7073 chr17 40705550 40705550 1 + T G STAD 40705551 + 40705531 40705571 41 GTGAATGTAGTAGGGACTGTGCGGATGCTGCAGGCCTTCCT GTGAATGTAGTAGGGACTGGGCGGATGCTGCAGGCCTTCCT < 41bp 0.803412494462387 0.481809173241974 NA NA prediction 0.606824988924774 Functional Loss - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705551 chr17:40705550 nonsynonymous SNV 0.081 3 20 hm7G_associated_SNPs_7294 0 0 1 0 1 HSD17B1 chr17:40705636 5'GT 40705636 Upstream 87bp 7074 chr11 44626677 44626677 1 + T G OV 44626678 + 44626658 44626698 41 GGGGCAGTCACTATGCTCATGGGCTTCCTGGGCTGCATCGG GGGGCAGTCACTATGCTCAGGGGCTTCCTGGGCTGCATCGG < 41bp 0.843390328688143 0.540404256689517 NA NA prediction 0.605972143997253 Functional Loss - CD82 ENSG00000085117 CDS Human protein_coding chr11:44626678 chr11:44626677 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_7295 0 0 1 0 2 CD82 chr11:44626608 3'AG 44626608 Downstream 70bp 7075 chr11 44626677 44626677 1 + T G OV 44626678 + 44626658 44626698 41 GGGGCAGTCACTATGCTCATGGGCTTCCTGGGCTGCATCGG GGGGCAGTCACTATGCTCAGGGGCTTCCTGGGCTGCATCGG < 41bp 0.843390328688143 0.540404256689517 NA NA prediction 0.605972143997253 Functional Loss - CD82 ENSG00000085117 CDS Human protein_coding chr11:44626678 chr11:44626677 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_7295 0 0 1 0 2 CD82 chr11:44626732 5'GT 44626732 Upstream 56bp 7076 chr7 73638058 73638058 1 + T G UCEC 73638059 + 73638039 73638079 41 CTCTCTCTCCTGCAGATGATGATGCCAATTCCTACGAGAAT CTCTCTCTCCTGCAGATGAGGATGCCAATTCCTACGAGAAT < 41bp 0.810757627908963 0.507772492520541 NA NA prediction 0.605970270776844 Functional Loss - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73638059 chr7:73638058 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_7296 0 0 0 0 2 LAT2 chr7:73638054 3'AG 73638054 Downstream 5bp 7077 chr7 73638058 73638058 1 + T G UCEC 73638059 + 73638039 73638079 41 CTCTCTCTCCTGCAGATGATGATGCCAATTCCTACGAGAAT CTCTCTCTCCTGCAGATGAGGATGCCAATTCCTACGAGAAT < 41bp 0.810757627908963 0.507772492520541 NA NA prediction 0.605970270776844 Functional Loss - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73638059 chr7:73638058 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_7296 0 0 0 0 2 LAT2 chr7:73638113 5'GT 73638113 Upstream 56bp 7078 chr15 69672282 69672282 1 + T G UCEC 69672283 + 69672263 69672303 41 ACAGAGTTCTGCCACTGCCTGCATCCTCAGCCTTTTCCAAA ACAGAGTTCTGCCACTGCCGGCATCCTCAGCCTTTTCCAAA < 41bp 0.822573970864381 0.519607844990231 NA NA prediction 0.605932251748301 Functional Loss - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69672283 chr15:69672282 nonsynonymous SNV 0.949 3 20 hm7G_associated_SNPs_7297 0 0 0 0 2 PAQR5 chr15:69672222 3'AG 69672222 Downstream 61bp 7079 chr15 69672282 69672282 1 + T G UCEC 69672283 + 69672263 69672303 41 ACAGAGTTCTGCCACTGCCTGCATCCTCAGCCTTTTCCAAA ACAGAGTTCTGCCACTGCCGGCATCCTCAGCCTTTTCCAAA < 41bp 0.822573970864381 0.519607844990231 NA NA prediction 0.605932251748301 Functional Loss - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69672283 chr15:69672282 nonsynonymous SNV 0.949 3 20 hm7G_associated_SNPs_7297 0 0 0 0 2 PAQR5 chr15:69672349 5'GT 69672349 Upstream 68bp 7080 chr11 117982495 117982495 1 + T G rs1941635 117982496 + 117982476 117982516 41 ACCCCCCGTGTGGTGGGTGTGGAGGAGGCCTCTGTGGATTC ACCCCCCGTGTGGTGGGTGGGGAGGAGGCCTCTGTGGATTC < 41bp 0.80281919933937 0.493292102932073 NA NA prediction 0.60563839867874 Functional Loss - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117982496 chr11:117982495 nonsynonymous SNV 0.040 0 20 hm7G_associated_SNPs_7298 0 0 0 0 1 TMPRSS4 chr11:117982456 3'AG 117982456 Downstream 40bp 7081 chr11 6260711 6260711 1 + T G STAD 6260712 + 6260692 6260732 41 TAACCTCATCATCCTCGTGTGCAGGTATGGCAGCGGTGCTA TAACCTCATCATCCTCGTGGGCAGGTATGGCAGCGGTGCTA < 41bp 0.807390976032293 0.504576274252285 NA NA prediction 0.605629403560016 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6260712 chr11:6260711 nonsynonymous SNV 0.977 1 20 hm7G_associated_SNPs_7299 0 0 0 0 2 CNGA4 chr11:6260614 3'AG 6260614 Downstream 98bp 7082 chr11 6260711 6260711 1 + T G STAD 6260712 + 6260692 6260732 41 TAACCTCATCATCCTCGTGTGCAGGTATGGCAGCGGTGCTA TAACCTCATCATCCTCGTGGGCAGGTATGGCAGCGGTGCTA < 41bp 0.807390976032293 0.504576274252285 NA NA prediction 0.605629403560016 Functional Loss - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6260712 chr11:6260711 nonsynonymous SNV 0.977 1 20 hm7G_associated_SNPs_7299 0 0 0 0 2 CNGA4 chr11:6260715 5'GT 6260715 Upstream 5bp 7083 chr3 16312479 16312479 1 + T G PAAD 16312480 + 16312460 16312500 41 ATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTG ATGGCCTGTGCTGCTGTTAGGATTCCTGGGTTGTTGCGGTG < 41bp 0.802665258978468 0.495065932019174 NA NA prediction 0.605330517956936 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312480 chr3:16312479 nonsynonymous SNV 0.036 0 20 hm7G_associated_SNPs_7301 0 0 1 0 3 OXNAD1 chr3:16312436 3'AG 16312436 Downstream 44bp 7084 chr3 16312479 16312479 1 + T G PAAD 16312480 + 16312460 16312500 41 ATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTG ATGGCCTGTGCTGCTGTTAGGATTCCTGGGTTGTTGCGGTG < 41bp 0.802665258978468 0.495065932019174 NA NA prediction 0.605330517956936 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312480 chr3:16312479 nonsynonymous SNV 0.036 0 20 hm7G_associated_SNPs_7301 0 0 1 0 3 OXNAD1 chr3:16312452 3'AG 16312452 Downstream 28bp 7085 chr3 16312479 16312479 1 + T G PAAD 16312480 + 16312460 16312500 41 ATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTG ATGGCCTGTGCTGCTGTTAGGATTCCTGGGTTGTTGCGGTG < 41bp 0.802665258978468 0.495065932019174 NA NA prediction 0.605330517956936 Functional Loss - OXNAD1 ENSG00000154814 CDS Human protein_coding chr3:16312480 chr3:16312479 nonsynonymous SNV 0.036 0 20 hm7G_associated_SNPs_7301 0 0 1 0 3 OXNAD1 chr3:16312578 5'GT 16312578 Upstream 100bp 7086 chr19 36550887 36550887 1 + T G HNSC 36550888 + 36550868 36550908 41 AGCTGTGTGGTGGTGATTTTGGACCCCAAGGAGAACAAGCA AGCTGTGTGGTGGTGATTTGGGACCCCAAGGAGAACAAGCA < 41bp 0.834587560062192 0.531950860063575 NA NA prediction 0.605273399997236 Functional Loss - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36550888 chr19:36550887 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7302 0 0 1 0 2 WDR62 chr19:36550870 3'AG 36550870 Downstream 18bp 7087 chr19 36550887 36550887 1 + T G HNSC 36550888 + 36550868 36550908 41 AGCTGTGTGGTGGTGATTTTGGACCCCAAGGAGAACAAGCA AGCTGTGTGGTGGTGATTTGGGACCCCAAGGAGAACAAGCA < 41bp 0.834587560062192 0.531950860063575 NA NA prediction 0.605273399997236 Functional Loss - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36550888 chr19:36550887 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7302 0 0 1 0 2 WDR62 chr19:36550932 5'GT 36550932 Upstream 46bp 7088 chr1 203015082 203015082 1 + T G SKCM 203015083 + 203015063 203015103 41 TCAATGACAAGCTGGAGAATGAGCTGGCCAACAAGGAGTCC TCAATGACAAGCTGGAGAAGGAGCTGGCCAACAAGGAGTCC < 41bp 0.80251016873437 0.477366225987235 NA NA prediction 0.605020337468741 Functional Loss - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203015083 chr1:203015082 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_7303 0 0 1 0 1 PPFIA4 chr1:203015115 5'GT 203015115 Upstream 34bp 7089 chr7 12666399 12666399 1 + T G SKCM 12666400 + 12666380 12666420 41 GCAGCCCAGCACAATATGGTGGATGATGGTTCTGGCAAAGT GCAGCCCAGCACAATATGGGGGATGATGGTTCTGGCAAAGT < 41bp 0.815539814387141 0.513121817010248 NA NA prediction 0.604835994753786 Functional Loss - SCIN ENSG00000006747 CDS Human protein_coding chr7:12666400 chr7:12666399 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7304 0 0 1 0 1 SCIN chr7:12666424 5'GT 12666424 Upstream 26bp 7090 chr15 34647250 34647250 1 + T G STAD 34647251 + 34647231 34647271 41 GTCATTCACCCTCAATTTCTGGCAGATCTGCTGTCCCCAGA GTCATTCACCCTCAATTTCGGGCAGATCTGCTGTCCCCAGA < 41bp 0.802411358983341 0.490225052526631 NA NA prediction 0.604822717966682 Functional Loss - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34647251 chr15:34647250 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_7305 0 0 0 0 2 NUTM1 chr15:34647222 3'AG 34647222 Downstream 29bp 7091 chr15 34647250 34647250 1 + T G STAD 34647251 + 34647231 34647271 41 GTCATTCACCCTCAATTTCTGGCAGATCTGCTGTCCCCAGA GTCATTCACCCTCAATTTCGGGCAGATCTGCTGTCCCCAGA < 41bp 0.802411358983341 0.490225052526631 NA NA prediction 0.604822717966682 Functional Loss - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34647251 chr15:34647250 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_7305 0 0 0 0 2 NUTM1 chr15:34647338 5'GT 34647338 Upstream 89bp 7092 chr19 15221519 15221519 1 + T G STAD 15221520 + 15221500 15221540 41 TCATCATCCAGAAGTGCGTTGGGCAGATCGAGCGCCGAGGG TCATCATCCAGAAGTGCGTGGGGCAGATCGAGCGCCGAGGG < 41bp 0.802403856470536 0.493327705359943 NA NA prediction 0.604807712941072 Functional Loss - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15221520 chr19:15221519 synonymous SNV . 0 20 hm7G_associated_SNPs_7307 0 0 0 0 1 SYDE1 chr19:15221546 5'GT 15221546 Upstream 28bp 7093 chr16 22142596 22142596 1 + T G LGG 22142597 + 22142577 22142617 41 CAACAATTTACAAAGTGCCTGGCGGTAGGTTATGGGCAGAG CAACAATTTACAAAGTGCCGGGCGGTAGGTTATGGGCAGAG < 41bp 0.802313655649763 0.497332488105484 NA NA prediction 0.604627311299527 Functional Loss - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22142597 chr16:22142596 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7308 0 0 0 0 2 VWA3A chr16:22142526 3'AG 22142526 Downstream 71bp 7094 chr16 22142596 22142596 1 + T G LGG 22142597 + 22142577 22142617 41 CAACAATTTACAAAGTGCCTGGCGGTAGGTTATGGGCAGAG CAACAATTTACAAAGTGCCGGGCGGTAGGTTATGGGCAGAG < 41bp 0.802313655649763 0.497332488105484 NA NA prediction 0.604627311299527 Functional Loss - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22142597 chr16:22142596 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7308 0 0 0 0 2 VWA3A chr16:22142600 5'GT 22142600 Upstream 5bp 7095 chr20 36948630 36948630 1 + T G SKCM 36948631 + 36948611 36948651 41 GGAATCAACTATGGTCTGGTGGCACCTCCAGCAACCACGGC GGAATCAACTATGGTCTGGGGGCACCTCCAGCAACCACGGC < 41bp 0.802301000118811 0.477859350428147 NA NA prediction 0.604602000237622 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36948631 chr20:36948630 nonsynonymous SNV 0.101 2 20 hm7G_associated_SNPs_7309 0 0 0 0 2 BPI chr20:36948585 3'AG 36948585 Downstream 46bp 7096 chr20 36948630 36948630 1 + T G SKCM 36948631 + 36948611 36948651 41 GGAATCAACTATGGTCTGGTGGCACCTCCAGCAACCACGGC GGAATCAACTATGGTCTGGGGGCACCTCCAGCAACCACGGC < 41bp 0.802301000118811 0.477859350428147 NA NA prediction 0.604602000237622 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36948631 chr20:36948630 nonsynonymous SNV 0.101 2 20 hm7G_associated_SNPs_7309 0 0 0 0 2 BPI chr20:36948676 5'GT 36948676 Upstream 47bp 7097 chr17 7606575 7606575 1 + T G LUAD 7606576 + 7606556 7606596 41 CTCAGCCTGCACCCTAGCCTGCCTCTCCTGGCCACTGCCTC CTCAGCCTGCACCCTAGCCGGCCTCTCCTGGCCACTGCCTC < 41bp 0.802214376580006 0.491956920824746 NA NA prediction 0.604428753160011 Functional Loss - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606576 chr17:7606575 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_7310 0 0 0 0 1 WRAP53 chr17:7606561 3'AG 7606561 Downstream 15bp 7098 chr10 13214704 13214704 1 + T G UCEC 13214705 + 13214685 13214725 41 CATGCTTTTCTGCGGAGCTTGATGTCCCTGCGCTACCAAGA CATGCTTTTCTGCGGAGCTGGATGTCCCTGCGCTACCAAGA < 41bp 0.827253298160918 0.525044754918278 NA NA prediction 0.604417086485281 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214705 chr10:13214704 synonymous SNV . 0 20 hm7G_associated_SNPs_7311 0 0 1 0 3 MCM10 chr10:13214625 3'AG 13214625 Downstream 80bp 7099 chr10 13214704 13214704 1 + T G UCEC 13214705 + 13214685 13214725 41 CATGCTTTTCTGCGGAGCTTGATGTCCCTGCGCTACCAAGA CATGCTTTTCTGCGGAGCTGGATGTCCCTGCGCTACCAAGA < 41bp 0.827253298160918 0.525044754918278 NA NA prediction 0.604417086485281 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214705 chr10:13214704 synonymous SNV . 0 20 hm7G_associated_SNPs_7311 0 0 1 0 3 MCM10 chr10:13214628 3'AG 13214628 Downstream 77bp 7100 chr10 13214704 13214704 1 + T G UCEC 13214705 + 13214685 13214725 41 CATGCTTTTCTGCGGAGCTTGATGTCCCTGCGCTACCAAGA CATGCTTTTCTGCGGAGCTGGATGTCCCTGCGCTACCAAGA < 41bp 0.827253298160918 0.525044754918278 NA NA prediction 0.604417086485281 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214705 chr10:13214704 synonymous SNV . 0 20 hm7G_associated_SNPs_7311 0 0 1 0 3 MCM10 chr10:13214765 5'GT 13214765 Upstream 62bp 7101 chr1 156706431 156706431 1 + T G BRCA 156706432 + 156706412 156706452 41 CCTTTCTCCCAGGTTTCCATGCTGAGCTCCTGCCCATCTTC CCTTTCTCCCAGGTTTCCAGGCTGAGCTCCTGCCCATCTTC < 41bp 0.802159576380456 0.489702463352265 NA NA prediction 0.604319152760912 Functional Loss - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156706432 chr1:156706431 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_7312 0 0 0 0 1 RRNAD1 chr1:156706424 3'AG 156706424 Downstream 8bp 7102 chr2 233272657 233272657 1 + T G COAD 233272658 + 233272638 233272678 41 TGGTACTCGGATGCCGACGTGCCTGCCTCGGCCCGCCAGGA TGGTACTCGGATGCCGACGGGCCTGCCTCGGCCCGCCAGGA < 41bp 0.802063238214265 0.476615475538819 NA NA prediction 0.604126476428529 Functional Loss - ALPPL2 ENSG00000163286 CDS Human protein_coding chr2:233272658 chr2:233272657 nonsynonymous SNV 0.004 4 20 hm7G_associated_SNPs_7315 0 0 0 0 1 ALPPL2 chr2:233272727 5'GT 233272727 Upstream 71bp 7103 chr16 22269064 22269064 1 + T G rs115145983 22269065 + 22269045 22269085 41 TCTCGCCCCGGGAGAGGGATGCAGTGAATCAGAACACCAAG TCTCGCCCCGGGAGAGGGAGGCAGTGAATCAGAACACCAAG < 41bp 0.801934718062771 0.486545716315273 NA NA prediction 0.603869436125543 Functional Loss - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22269065 chr16:22269064 nonsynonymous SNV 0.030 1 20 hm7G_associated_SNPs_7316 0 0 1 1 1 EEF2K chr16:22269091 5'GT 22269091 Upstream 28bp 7104 chrX 153694105 153694105 1 + T G UCEC 153694106 + 153694086 153694126 41 TCAGAGCACAGGTGCCAGCTGCGGACCCACTGCCCGGCCCC TCAGAGCACAGGTGCCAGCGGCGGACCCACTGCCCGGCCCC < 41bp 0.842260479701293 0.540350326981062 NA NA prediction 0.603820305440463 Functional Loss - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153694106 chrX:153694105 nonsynonymous SNV 0.955 4 20 hm7G_associated_SNPs_7317 0 0 0 0 1 PLXNA3 chrX:153694190 5'GT 153694190 Upstream 86bp 7105 chr11 44077749 44077749 1 + T G LUSC 44077750 + 44077730 44077770 41 TCTAGGATTTTGGCATCTCTGGCTTCCGCTTTGGTGCTCTG TCTAGGATTTTGGCATCTCGGGCTTCCGCTTTGGTGCTCTG < 41bp 0.8219851204714 0.520123678603401 NA NA prediction 0.603722883735998 Functional Loss - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44077750 chr11:44077749 synonymous SNV . 0 20 hm7G_associated_SNPs_7318 0 0 0 0 1 ACCSL chr11:44077735 3'AG 44077735 Downstream 15bp 7106 chr12 119592167 119592167 1 + T G OV 119592168 + 119592148 119592188 41 AGAGACTCCCCGAGCCACCTGGAGGCCCGGAGGATAACCAG AGAGACTCCCCGAGCCACCGGGAGGCCCGGAGGATAACCAG < 41bp 0.801833073268352 0.479910944771936 NA NA prediction 0.603666146536704 Functional Loss - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119592168 chr12:119592167 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7319 0 0 0 0 1 SRRM4 chr12:119592188 5'GT 119592188 Upstream 22bp 7107 chr20 49195155 49195155 1 + T G KIRP 49195156 + 49195136 49195176 41 CTTCTGTCTGGCTGATACCTGCCTCTTGCTGGTAAGGAGGC CTTCTGTCTGGCTGATACCGGCCTCTTGCTGGTAAGGAGGC < 41bp 0.820895424313994 0.519219741889217 NA NA prediction 0.603351364849555 Functional Loss - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195156 chr20:49195155 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_7322 0 0 1 0 1 PTPN1 chr20:49195166 5'GT 49195166 Upstream 12bp 7108 chr2 42531667 42531667 1 + T G SKCM 42531668 + 42531648 42531688 41 CATCCAAGTGGCACAGTGGTGGCCATAGGAACGCACTCAGG CATCCAAGTGGCACAGTGGGGGCCATAGGAACGCACTCAGG < 41bp 0.801573219149554 0.491255024889212 NA NA prediction 0.603146438299109 Functional Loss - EML4 ENSG00000143924 CDS Human protein_coding chr2:42531668 chr2:42531667 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7324 0 0 1 0 2 EML4 chr2:42531624 3'AG 42531624 Downstream 44bp 7109 chr2 42531667 42531667 1 + T G SKCM 42531668 + 42531648 42531688 41 CATCCAAGTGGCACAGTGGTGGCCATAGGAACGCACTCAGG CATCCAAGTGGCACAGTGGGGGCCATAGGAACGCACTCAGG < 41bp 0.801573219149554 0.491255024889212 NA NA prediction 0.603146438299109 Functional Loss - EML4 ENSG00000143924 CDS Human protein_coding chr2:42531668 chr2:42531667 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7324 0 0 1 0 2 EML4 chr2:42531691 5'GT 42531691 Upstream 25bp 7110 chr6 159621089 159621089 1 + T G ESCA 159621090 + 159621070 159621110 41 ACAGTGGAGTGAGCCGTCCTGTTTACAGAGCTGAAAGCCCA ACAGTGGAGTGAGCCGTCCGGTTTACAGAGCTGAAAGCCCA < 41bp 0.816836276324509 0.515337487495189 NA NA prediction 0.60299757765864 Functional Loss - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159621090 chr6:159621089 synonymous SNV . 0 20 hm7G_associated_SNPs_7325 0 0 0 0 2 FNDC1 chr6:159621028 3'AG 159621028 Downstream 62bp 7111 chr6 159621089 159621089 1 + T G ESCA 159621090 + 159621070 159621110 41 ACAGTGGAGTGAGCCGTCCTGTTTACAGAGCTGAAAGCCCA ACAGTGGAGTGAGCCGTCCGGTTTACAGAGCTGAAAGCCCA < 41bp 0.816836276324509 0.515337487495189 NA NA prediction 0.60299757765864 Functional Loss - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159621090 chr6:159621089 synonymous SNV . 0 20 hm7G_associated_SNPs_7325 0 0 0 0 2 FNDC1 chr6:159621114 5'GT 159621114 Upstream 26bp 7112 chr11 67163589 67163589 1 + T G COAD 67163590 + 67163570 67163610 41 CTTTCCTCCCAGGGGCTCCTGAGCTTTGCAGAGTCAGCAAA CTTTCCTCCCAGGGGCTCCGGAGCTTTGCAGAGTCAGCAAA < 41bp 0.801445400100925 0.482236024929995 NA NA prediction 0.60289080020185 Functional Loss - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67163590 chr11:67163589 nonsynonymous SNV 0.735 4 20 hm7G_associated_SNPs_7326 0 0 1 0 2 RAD9A chr11:67163582 3'AG 67163582 Downstream 8bp 7113 chr11 67163589 67163589 1 + T G COAD 67163590 + 67163570 67163610 41 CTTTCCTCCCAGGGGCTCCTGAGCTTTGCAGAGTCAGCAAA CTTTCCTCCCAGGGGCTCCGGAGCTTTGCAGAGTCAGCAAA < 41bp 0.801445400100925 0.482236024929995 NA NA prediction 0.60289080020185 Functional Loss - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67163590 chr11:67163589 nonsynonymous SNV 0.735 4 20 hm7G_associated_SNPs_7326 0 0 1 0 2 RAD9A chr11:67163646 5'GT 67163646 Upstream 58bp 7114 chr1 44121280 44121280 1 + T G COAD 44121281 + 44121261 44121301 41 GGTTGTTCCTCCAAAAGAGTGGAAGCCACGAGCATCCTATG GGTTGTTCCTCCAAAAGAGGGGAAGCCACGAGCATCCTATG < 41bp 0.801351889104702 0.483930211369571 NA NA prediction 0.602703778209403 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44121281 chr1:44121280 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7328 0 0 1 0 1 KDM4A chr1:44121262 3'AG 44121262 Downstream 19bp 7115 chr21 47421969 47421969 1 + T G SKCM 47421970 + 47421950 47421990 41 AGCCCCAGCATCCGGAACGTGCAGGAGCTCAAGGAGTGAGT AGCCCCAGCATCCGGAACGGGCAGGAGCTCAAGGAGTGAGT < 41bp 0.801326651513846 0.485670271604707 NA NA prediction 0.602653303027692 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47421970 chr21:47421969 nonsynonymous SNV 0.016 1 20 hm7G_associated_SNPs_7329 0 0 0 0 2 COL6A1 chr21:47421875 3'AG 47421875 Downstream 95bp 7116 chr21 47421969 47421969 1 + T G SKCM 47421970 + 47421950 47421990 41 AGCCCCAGCATCCGGAACGTGCAGGAGCTCAAGGAGTGAGT AGCCCCAGCATCCGGAACGGGCAGGAGCTCAAGGAGTGAGT < 41bp 0.801326651513846 0.485670271604707 NA NA prediction 0.602653303027692 Functional Loss - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47421970 chr21:47421969 nonsynonymous SNV 0.016 1 20 hm7G_associated_SNPs_7329 0 0 0 0 2 COL6A1 chr21:47421984 5'GT 47421984 Upstream 16bp 7117 chr3 38518838 38518838 1 + T G COAD 38518839 + 38518819 38518859 41 TACAACGCCAACTGGGAGCTGGAGCGCACCAACCAGAGCGG TACAACGCCAACTGGGAGCGGGAGCGCACCAACCAGAGCGG < 41bp 0.808338487671432 0.50709761919973 NA NA prediction 0.602481736943404 Functional Loss - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38518839 chr3:38518838 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7330 0 0 1 0 1 ACVR2B chr3:38518778 3'AG 38518778 Downstream 61bp 7118 chr19 42409130 42409130 1 + T G LIHC 42409131 + 42409111 42409151 41 CTTCTACGTCCTTTTTACCTGGGACCAGGAGGCCCAGATAT CTTCTACGTCCTTTTTACCGGGGACCAGGAGGCCCAGATAT < 41bp 0.833074013736577 0.532042174135483 NA NA prediction 0.602063679202187 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42409131 chr19:42409130 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7331 0 0 1 0 2 ARHGEF1 chr19:42409101 3'AG 42409101 Downstream 30bp 7119 chr19 42409130 42409130 1 + T G LIHC 42409131 + 42409111 42409151 41 CTTCTACGTCCTTTTTACCTGGGACCAGGAGGCCCAGATAT CTTCTACGTCCTTTTTACCGGGGACCAGGAGGCCCAGATAT < 41bp 0.833074013736577 0.532042174135483 NA NA prediction 0.602063679202187 Functional Loss - ARHGEF1 ENSG00000076928 CDS Human protein_coding chr19:42409131 chr19:42409130 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7331 0 0 1 0 2 ARHGEF1 chr19:42409188 5'GT 42409188 Upstream 59bp 7120 chr3 41274920 41274920 1 + T G SKCM 41274921 + 41274901 41274941 41 CTCTCAGGAATCTTTCAGATGCTGCAACTAAACAGGTAAAT CTCTCAGGAATCTTTCAGAGGCTGCAACTAAACAGGTAAAT < 41bp 0.805519446054002 0.504509406895923 NA NA prediction 0.602020078316159 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41274921 chr3:41274920 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7332 0 0 1 0 2 CTNNB1 chr3:41274832 3'AG 41274832 Downstream 89bp 7121 chr3 41274920 41274920 1 + T G SKCM 41274921 + 41274901 41274941 41 CTCTCAGGAATCTTTCAGATGCTGCAACTAAACAGGTAAAT CTCTCAGGAATCTTTCAGAGGCTGCAACTAAACAGGTAAAT < 41bp 0.805519446054002 0.504509406895923 NA NA prediction 0.602020078316159 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41274921 chr3:41274920 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7332 0 0 1 0 2 CTNNB1 chr3:41274935 5'GT 41274935 Upstream 16bp 7122 chr1 200013008 200013008 1 + T G LUAD 200013009 + 200012989 200013029 41 ATTATGGGCTCCTCACCTGTGAAAGCTGCAAGGTTTGCTCA ATTATGGGCTCCTCACCTGGGAAAGCTGCAAGGTTTGCTCA < 41bp 0.809158489916693 0.508257222611047 NA NA prediction 0.601802534611291 Functional Loss - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200013009 chr1:200013008 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7333 0 0 0 0 1 NR5A2 chr1:200013020 5'GT 200013020 Upstream 13bp 7123 chr7 30651808 30651808 1 + T G LGG 30651809 + 30651789 30651829 41 CTTTTGCTGCTGCCCAGATTGGAAATTCTTTTAGAAATGAG CTTTTGCTGCTGCCCAGATGGGAAATTCTTTTAGAAATGAG < 41bp 0.800828120296234 0.481114333926418 NA NA prediction 0.601656240592468 Functional Loss - GARS ENSG00000106105 CDS Human protein_coding chr7:30651809 chr7:30651808 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7334 0 0 1 0 2 GARS chr7:30651712 3'AG 30651712 Downstream 97bp 7124 chr7 30651808 30651808 1 + T G LGG 30651809 + 30651789 30651829 41 CTTTTGCTGCTGCCCAGATTGGAAATTCTTTTAGAAATGAG CTTTTGCTGCTGCCCAGATGGGAAATTCTTTTAGAAATGAG < 41bp 0.800828120296234 0.481114333926418 NA NA prediction 0.601656240592468 Functional Loss - GARS ENSG00000106105 CDS Human protein_coding chr7:30651809 chr7:30651808 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7334 0 0 1 0 2 GARS chr7:30651861 5'GT 30651861 Upstream 54bp 7125 chr10 101578952 101578952 1 + T G rs17222617 101578953 + 101578933 101578973 41 GGATCCTACAGTGCTCTCCTGGCCAAAAAAGGAGAGTTTGC GGATCCTACAGTGCTCTCCGGGCCAAAAAAGGAGAGTTTGC < 41bp 0.800821720685038 0.495279134451944 NA NA prediction 0.601643441370076 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101578953 chr10:101578952 nonsynonymous SNV 0.380 2 20 hm7G_associated_SNPs_7335 1 0 1 0 1 ABCC2 chr10:101579026 5'GT 101579026 Upstream 75bp 7126 chr16 90106884 90106884 1 + T G rs61734729 90106885 + 90106865 90106905 41 CTGCCTCTAACCTGGACCCTGCAGCCCTGACGCTGGTGTCC CTGCCTCTAACCTGGACCCGGCAGCCCTGACGCTGGTGTCC < 41bp 0.832434372474635 0.531627108046072 NA NA prediction 0.601614528857126 Functional Loss - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90106885 chr16:90106884 synonymous SNV . 0 20 hm7G_associated_SNPs_7336 0 0 1 0 1 GAS8 chr16:90106917 5'GT 90106917 Upstream 34bp 7127 chr17 45360751 45360751 1 + T G rs36080296 45360752 + 45360732 45360772 41 GGCTCACCTCGCTGTGACCTGAAGGAGAATCTGCTGAAGGA GGCTCACCTCGCTGTGACCGGAAGGAGAATCTGCTGAAGGA < 41bp 0.800661768340134 0.48326318013123 NA NA prediction 0.601323536680267 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45360752 chr17:45360751 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7337 0 0 0 0 1 ITGB3 chr17:45360720 3'AG 45360720 Downstream 32bp 7128 chr19 55496486 55496486 1 + T G UCEC 55496487 + 55496467 55496507 41 TTTGGATCAAATAAGGATCTGATGGGTCTAGCAATCAATGA TTTGGATCAAATAAGGATCGGATGGGTCTAGCAATCAATGA < 41bp 0.806963370600664 0.506544009794763 NA NA prediction 0.600838721611803 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55496487 chr19:55496486 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_7339 0 0 0 0 2 NLRP2 chr19:55496415 3'AG 55496415 Downstream 72bp 7129 chr19 55496486 55496486 1 + T G UCEC 55496487 + 55496467 55496507 41 TTTGGATCAAATAAGGATCTGATGGGTCTAGCAATCAATGA TTTGGATCAAATAAGGATCGGATGGGTCTAGCAATCAATGA < 41bp 0.806963370600664 0.506544009794763 NA NA prediction 0.600838721611803 Functional Loss - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55496487 chr19:55496486 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_7339 0 0 0 0 2 NLRP2 chr19:55496585 5'GT 55496585 Upstream 100bp 7130 chr20 2591222 2591222 1 + T G SARC 2591223 + 2591203 2591243 41 TACACATTTCTCTTGGCCCTGATGGATGACGTCCACCTCAA TACACATTTCTCTTGGCCCGGATGGATGACGTCCACCTCAA < 41bp 0.820788518791917 0.520370876658004 NA NA prediction 0.600835284267826 Functional Loss - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2591223 chr20:2591222 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_7340 0 0 0 0 1 TMC2 chr20:2591244 5'GT 2591244 Upstream 23bp 7131 chr8 102661654 102661654 1 + T G COAD 102661655 + 102661635 102661675 41 CTTCCAGTGCTCTTGTACGTGAGGAAGGAGACTGACGATGT CTTCCAGTGCTCTTGTACGGGAGGAAGGAGACTGACGATGT < 41bp 0.800503778038687 0.50025387469483 NA NA prediction 0.600499806687715 Functional Loss - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102661655 chr8:102661654 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_7343 0 0 0 0 2 GRHL2 chr8:102661642 3'AG 102661642 Downstream 13bp 7132 chr8 102661654 102661654 1 + T G COAD 102661655 + 102661635 102661675 41 CTTCCAGTGCTCTTGTACGTGAGGAAGGAGACTGACGATGT CTTCCAGTGCTCTTGTACGGGAGGAAGGAGACTGACGATGT < 41bp 0.800503778038687 0.50025387469483 NA NA prediction 0.600499806687715 Functional Loss - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102661655 chr8:102661654 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_7343 0 0 0 0 2 GRHL2 chr8:102661727 5'GT 102661727 Upstream 74bp 7133 chr10 5958263 5958263 1 + T G rs116757267 5958264 + 5958244 5958284 41 TGGTCAACTCCGTCCTTGCTGAAGGGAAGGGTGGATTCATA TGGTCAACTCCGTCCTTGCGGAAGGGAAGGGTGGATTCATA < 41bp 0.827036688887107 0.526805184564373 NA NA prediction 0.600463008645467 Functional Loss - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5958264 chr10:5958263 synonymous SNV . 0 20 hm7G_associated_SNPs_7344 0 0 1 0 1 FBXO18 chr10:5958197 3'AG 5958197 Downstream 67bp 7134 chr5 96322349 96322349 1 + T G STAD 96322350 + 96322330 96322370 41 GTGGGAGAGATGAAGAACCTGAGTCAGGACGTAAATGGAAC GTGGGAGAGATGAAGAACCGGAGTCAGGACGTAAATGGAAC < 41bp 0.819564154516362 0.519393139119791 NA NA prediction 0.600342030793141 Functional Loss - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96322350 chr5:96322349 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_7345 0 0 1 0 1 LNPEP chr5:96322374 5'GT 96322374 Upstream 26bp 7135 chr13 77570231 77570231 1 + T G UCEC 77570232 + 77570212 77570252 41 ATGTTCACTGGAAGGAAAATGGGACATTAGTTCAAGTAGCA ATGTTCACTGGAAGGAAAAGGGGACATTAGTTCAAGTAGCA < 41bp 0.808269956155133 0.508167850949912 NA NA prediction 0.600204210410443 Functional Loss - CLN5 ENSG00000102805 CDS Human protein_coding chr13:77570232 chr13:77570231 nonsynonymous SNV 0.920 5 20 hm7G_associated_SNPs_7347 0 0 1 0 1 CLN5 chr13:77570262 5'GT 77570262 Upstream 32bp 7136 chr3 39174568 39174568 1 + T G UCEC 39174569 + 39174549 39174589 41 GACCTCCAGTCTCGGATACTGAAGCGAGTTCCACTGGAGCA GACCTCCAGTCTCGGATACGGAAGCGAGTTCCACTGGAGCA < 41bp 0.810261181339438 0.510189133345588 NA NA prediction 0.6001440959877 Functional Loss - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39174569 chr3:39174568 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_7348 0 0 0 0 1 TTC21A chr3:39174543 3'AG 39174543 Downstream 26bp 7137 chr13 25264605 25264605 1 + T G LUSC 25264606 + 25264586 25264626 41 GGTGCTGTCTTCTCAGGGGTGTCGGGTAAGCGGCAAGGGGT GGTGCTGTCTTCTCAGGGGGGTCGGGTAAGCGGCAAGGGGT < 41bp 0.800026743098586 0.497237971779219 NA NA prediction 0.600053486197172 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264606 chr13:25264605 nonsynonymous SNV 0.039 5 20 hm7G_associated_SNPs_7349 0 0 0 0 1 ATP12A chr13:25264610 5'GT 25264610 Upstream 6bp 7138 chr11 8706406 8706406 1 + T G rs4670 8706407 + 8706387 8706427 41 ATGCTGCTAAAAACAAGACTGGGGCTGCTCCCATCATTGAT ATGCTGCTAAAAACAAGACGGGGGCTGCTCCCATCATTGAT < 41bp 0.800009430823242 0.494238510562578 NA NA prediction 0.600018861646484 Functional Loss - RPL27A ENSG00000166441 CDS Human protein_coding chr11:8706407 chr11:8706406 synonymous SNV . 0 20 hm7G_associated_SNPs_7351 0 0 1 0 1 RPL27A chr11:8706439 5'GT 8706439 Upstream 34bp 7139 chr7 129938648 129938648 1 + T G LUAD 129938649 + 129938629 129938669 41 AGCAAATTGAGTCAACTAGTGAATTCAAACAACTTGAAGGT AGCAAATTGAGTCAACTAGGGAATTCAAACAACTTGAAGGT < 41bp 0.810655125496998 0.510704728363162 NA NA prediction 0.599900794267672 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129938649 chr7:129938648 nonsynonymous SNV 0.800 0 20 hm7G_associated_SNPs_7352 0 0 0 0 2 CPA4 chr7:129938586 3'AG 129938586 Downstream 63bp 7140 chr7 129938648 129938648 1 + T G LUAD 129938649 + 129938629 129938669 41 AGCAAATTGAGTCAACTAGTGAATTCAAACAACTTGAAGGT AGCAAATTGAGTCAACTAGGGAATTCAAACAACTTGAAGGT < 41bp 0.810655125496998 0.510704728363162 NA NA prediction 0.599900794267672 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129938649 chr7:129938648 nonsynonymous SNV 0.800 0 20 hm7G_associated_SNPs_7352 0 0 0 0 2 CPA4 chr7:129938667 5'GT 129938667 Upstream 20bp 7141 chr19 36124064 36124064 1 + T G LUSC 36124065 + 36124045 36124085 41 TCGTGGGCCCCCCTCTGCCTGGGCCCCCTGGACCACCCATG TCGTGGGCCCCCCTCTGCCGGGGCCCCCTGGACCACCCATG < 41bp 0.799911392946462 0.46136313504662 NA NA prediction 0.599822785892925 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124065 chr19:36124064 synonymous SNV . 0 20 hm7G_associated_SNPs_7353 0 0 1 0 4 RBM42 chr19:36123979 3'AG 36123979 Downstream 86bp 7142 chr19 36124064 36124064 1 + T G LUSC 36124065 + 36124045 36124085 41 TCGTGGGCCCCCCTCTGCCTGGGCCCCCTGGACCACCCATG TCGTGGGCCCCCCTCTGCCGGGGCCCCCTGGACCACCCATG < 41bp 0.799911392946462 0.46136313504662 NA NA prediction 0.599822785892925 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124065 chr19:36124064 synonymous SNV . 0 20 hm7G_associated_SNPs_7353 0 0 1 0 4 RBM42 chr19:36124000 3'AG 36124000 Downstream 65bp 7143 chr19 36124064 36124064 1 + T G LUSC 36124065 + 36124045 36124085 41 TCGTGGGCCCCCCTCTGCCTGGGCCCCCTGGACCACCCATG TCGTGGGCCCCCCTCTGCCGGGGCCCCCTGGACCACCCATG < 41bp 0.799911392946462 0.46136313504662 NA NA prediction 0.599822785892925 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124065 chr19:36124064 synonymous SNV . 0 20 hm7G_associated_SNPs_7353 0 0 1 0 4 RBM42 chr19:36124003 3'AG 36124003 Downstream 62bp 7144 chr19 36124064 36124064 1 + T G LUSC 36124065 + 36124045 36124085 41 TCGTGGGCCCCCCTCTGCCTGGGCCCCCTGGACCACCCATG TCGTGGGCCCCCCTCTGCCGGGGCCCCCTGGACCACCCATG < 41bp 0.799911392946462 0.46136313504662 NA NA prediction 0.599822785892925 Functional Loss - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124065 chr19:36124064 synonymous SNV . 0 20 hm7G_associated_SNPs_7353 0 0 1 0 4 RBM42 chr19:36124154 5'GT 36124154 Upstream 91bp 7145 chr12 51102297 51102297 1 + T G SKCM 51102298 + 51102278 51102318 41 TGGTTGCGGAACAAAGACCTGATGCTTCTGAGGAAGATAGT TGGTTGCGGAACAAAGACCGGATGCTTCTGAGGAAGATAGT < 41bp 0.817417529275379 0.517547933913508 NA NA prediction 0.599739190723741 Functional Loss - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51102298 chr12:51102297 synonymous SNV . 0 20 hm7G_associated_SNPs_7354 0 0 1 0 2 DIP2B chr12:51102231 3'AG 51102231 Downstream 67bp 7146 chr12 51102297 51102297 1 + T G SKCM 51102298 + 51102278 51102318 41 TGGTTGCGGAACAAAGACCTGATGCTTCTGAGGAAGATAGT TGGTTGCGGAACAAAGACCGGATGCTTCTGAGGAAGATAGT < 41bp 0.817417529275379 0.517547933913508 NA NA prediction 0.599739190723741 Functional Loss - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51102298 chr12:51102297 synonymous SNV . 0 20 hm7G_associated_SNPs_7354 0 0 1 0 2 DIP2B chr12:51102345 5'GT 51102345 Upstream 49bp 7147 chr12 10339055 10339055 1 + T G LUAD 10339056 + 10339036 10339076 41 GCGCGCTGCTTCTCCTGTGTGGCCTGACGTCCCTGTGCTTC GCGCGCTGCTTCTCCTGTGGGGCCTGACGTCCCTGTGCTTC < 41bp 0.824320106556468 0.524452039265709 NA NA prediction 0.599736134581519 Functional Loss - TMEM52B ENSG00000165685 CDS Human protein_coding chr12:10339056 chr12:10339055 nonsynonymous SNV 0.661 1 20 hm7G_associated_SNPs_7355 0 0 0 0 1 TMEM52B chr12:10339019 3'AG 10339019 Downstream 37bp 7148 chr18 29049227 29049227 1 + T G BLCA 29049228 + 29049208 29049248 41 CTTACCCAACCACAAGCCCTGGGACCAGGTATGGCAGGCCG CTTACCCAACCACAAGCCCGGGGACCAGGTATGGCAGGCCG < 41bp 0.799827555681209 0.485054794286824 NA NA prediction 0.599655111362418 Functional Loss - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29049228 chr18:29049227 synonymous SNV . 0 20 hm7G_associated_SNPs_7356 0 0 0 0 1 DSG3 chr18:29049312 5'GT 29049312 Upstream 86bp 7149 chr5 72419209 72419209 1 + T G LUSC 72419210 + 72419190 72419230 41 CTCTCCTGGACATGTCTCCTGCAGCTGCTGCTGAGCCAGAT CTCTCCTGGACATGTCTCCGGCAGCTGCTGCTGAGCCAGAT < 41bp 0.799810502557842 0.490902899649474 NA NA prediction 0.599621005115684 Functional Loss - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72419210 chr5:72419209 synonymous SNV . 0 20 hm7G_associated_SNPs_7359 0 0 0 0 1 TMEM171 chr5:72419133 3'AG 72419133 Downstream 77bp 7150 chr4 8456486 8456486 1 + T G COAD 8456487 + 8456467 8456507 41 AGCATCCAGGCAGAGGGATTGATGTCCGAAGAAGAAAAATC AGCATCCAGGCAGAGGGATGGATGTCCGAAGAAGAAAAATC < 41bp 0.79980859377818 0.488765861569754 NA NA prediction 0.59961718755636 Functional Loss - TRMT44 ENSG00000155275 CDS Human protein_coding chr4:8456487 chr4:8456486 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7360 0 0 1 0 2 TRMT44 chr4:8456469 3'AG 8456469 Downstream 18bp 7151 chr4 8456486 8456486 1 + T G COAD 8456487 + 8456467 8456507 41 AGCATCCAGGCAGAGGGATTGATGTCCGAAGAAGAAAAATC AGCATCCAGGCAGAGGGATGGATGTCCGAAGAAGAAAAATC < 41bp 0.79980859377818 0.488765861569754 NA NA prediction 0.59961718755636 Functional Loss - TRMT44 ENSG00000155275 CDS Human protein_coding chr4:8456487 chr4:8456486 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7360 0 0 1 0 2 TRMT44 chr4:8456540 5'GT 8456540 Upstream 55bp 7152 chr1 53535771 53535771 1 + T G UCEC 53535772 + 53535752 53535792 41 CCAGGAGGGCGTCGTGGACTGTGGCGGTATTGACCTGCGTG CCAGGAGGGCGTCGTGGACGGTGGCGGTATTGACCTGCGTG < 41bp 0.799786952913303 0.48129727729016 NA NA prediction 0.599573905826606 Functional Loss - PODN ENSG00000174348 CDS Human protein_coding chr1:53535772 chr1:53535771 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7361 0 0 0 0 1 PODN chr1:53535839 5'GT 53535839 Upstream 69bp 7153 chr6 110081568 110081568 1 + T G PRAD 110081569 + 110081549 110081589 41 GTTTATATTCCCTGGGACATGGCCAAGTATACCAAAAGGTG GTTTATATTCCCTGGGACAGGGCCAAGTATACCAAAAGGTG < 41bp 0.81729176000512 0.517594141171339 NA NA prediction 0.599395237667563 Functional Loss - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110081569 chr6:110081568 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7362 0 0 1 0 1 FIG4 chr6:110081586 5'GT 110081586 Upstream 19bp 7154 chr1 45269884 45269884 1 + T G BLCA 45269885 + 45269865 45269905 41 TAGTGGAGTCAGCCCTTTGTGCTCTGAGAAATTGTATAGCC TAGTGGAGTCAGCCCTTTGGGCTCTGAGAAATTGTATAGCC < 41bp 0.826108394643753 0.52641670300595 NA NA prediction 0.599383383275606 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45269885 chr1:45269884 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_7363 0 0 0 0 2 PLK3 chr1:45269835 3'AG 45269835 Downstream 50bp 7155 chr1 45269884 45269884 1 + T G BLCA 45269885 + 45269865 45269905 41 TAGTGGAGTCAGCCCTTTGTGCTCTGAGAAATTGTATAGCC TAGTGGAGTCAGCCCTTTGGGCTCTGAGAAATTGTATAGCC < 41bp 0.826108394643753 0.52641670300595 NA NA prediction 0.599383383275606 Functional Loss - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45269885 chr1:45269884 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_7363 0 0 0 0 2 PLK3 chr1:45269918 5'GT 45269918 Upstream 35bp 7156 chr4 134084157 134084157 1 + T G STAD 134084158 + 134084138 134084178 41 ATCTCTTCTCCAATTGCACTGAGGAATGTAAAGCTCTGGGC ATCTCTTCTCCAATTGCACGGAGGAATGTAAAGCTCTGGGC < 41bp 0.814513286065331 0.514859008975541 NA NA prediction 0.599308554179581 Functional Loss - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134084158 chr4:134084157 synonymous SNV . 0 20 hm7G_associated_SNPs_7364 0 0 0 0 1 PCDH10 chr4:134084132 3'AG 134084132 Downstream 26bp 7157 chr2 220473929 220473929 1 + T G rs35240018 220473930 + 220473910 220473950 41 AGCCTGATGCCCACGCAGCTGTCCAGGTGATGGCGCCCAGA AGCCTGATGCCCACGCAGCGGTCCAGGTGATGGCGCCCAGA < 41bp 0.799618679598144 0.486198825992419 NA NA prediction 0.599237359196289 Functional Loss - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220473930 chr2:220473929 synonymous SNV . 0 20 hm7G_associated_SNPs_7365 0 0 1 0 1 STK11IP chr2:220473935 5'GT 220473935 Upstream 7bp 7158 chr21 45860766 45860766 1 + T G rs142151549 45860767 + 45860747 45860787 41 TTCCAGGACCAGAATGACGTGGAGCTGAACAGGCTGAACTC TTCCAGGACCAGAATGACGGGGAGCTGAACAGGCTGAACTC < 41bp 0.827473610654111 0.527904198434368 NA NA prediction 0.599138824439486 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45860767 chr21:45860766 nonsynonymous SNV 0.062 2 20 hm7G_associated_SNPs_7367 0 0 0 0 2 TRPM2 chr21:45860672 3'AG 45860672 Downstream 95bp 7159 chr21 45860766 45860766 1 + T G rs142151549 45860767 + 45860747 45860787 41 TTCCAGGACCAGAATGACGTGGAGCTGAACAGGCTGAACTC TTCCAGGACCAGAATGACGGGGAGCTGAACAGGCTGAACTC < 41bp 0.827473610654111 0.527904198434368 NA NA prediction 0.599138824439486 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45860767 chr21:45860766 nonsynonymous SNV 0.062 2 20 hm7G_associated_SNPs_7367 0 0 0 0 2 TRPM2 chr21:45860788 5'GT 45860788 Upstream 23bp 7160 chr19 17988825 17988825 1 + T G rs8108188 17988826 + 17988806 17988846 41 GATCGTGTCCAGCGCTGCCTGCTGTGGCATCGTCATGTTTG GATCGTGTCCAGCGCTGCCGGCTGTGGCATCGTCATGTTTG < 41bp 0.835844263805485 0.536293607798643 NA NA prediction 0.599101312013684 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17988826 chr19:17988825 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_7368 0 0 0 0 2 SLC5A5 chr19:17988773 3'AG 17988773 Downstream 53bp 7161 chr19 17988825 17988825 1 + T G rs8108188 17988826 + 17988806 17988846 41 GATCGTGTCCAGCGCTGCCTGCTGTGGCATCGTCATGTTTG GATCGTGTCCAGCGCTGCCGGCTGTGGCATCGTCATGTTTG < 41bp 0.835844263805485 0.536293607798643 NA NA prediction 0.599101312013684 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17988826 chr19:17988825 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_7368 0 0 0 0 2 SLC5A5 chr19:17988902 5'GT 17988902 Upstream 78bp 7162 chr14 75357797 75357797 1 + T G UCEC 75357798 + 75357778 75357818 41 CACCAGCAAATGGCGTGATTGAAGCTCTTTTGGTACCTGAT CACCAGCAAATGGCGTGATGGAAGCTCTTTTGGTACCTGAT < 41bp 0.825795687438474 0.52626868420175 NA NA prediction 0.599054006473448 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75357798 chr14:75357797 stoploss 0.999 4 20 hm7G_associated_SNPs_7369 0 0 1 0 3 DLST chr14:75357759 3'AG 75357759 Downstream 39bp 7163 chr14 75357797 75357797 1 + T G UCEC 75357798 + 75357778 75357818 41 CACCAGCAAATGGCGTGATTGAAGCTCTTTTGGTACCTGAT CACCAGCAAATGGCGTGATGGAAGCTCTTTTGGTACCTGAT < 41bp 0.825795687438474 0.52626868420175 NA NA prediction 0.599054006473448 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75357798 chr14:75357797 stoploss 0.999 4 20 hm7G_associated_SNPs_7369 0 0 1 0 3 DLST chr14:75357771 3'AG 75357771 Downstream 27bp 7164 chr14 75357797 75357797 1 + T G UCEC 75357798 + 75357778 75357818 41 CACCAGCAAATGGCGTGATTGAAGCTCTTTTGGTACCTGAT CACCAGCAAATGGCGTGATGGAAGCTCTTTTGGTACCTGAT < 41bp 0.825795687438474 0.52626868420175 NA NA prediction 0.599054006473448 Functional Loss - DLST ENSG00000119689 CDS Human protein_coding chr14:75357798 chr14:75357797 stoploss 0.999 4 20 hm7G_associated_SNPs_7369 0 0 1 0 3 DLST chr14:75357870 5'GT 75357870 Upstream 74bp 7165 chr1 201294947 201294947 1 + T G COAD 201294948 + 201294928 201294968 41 ATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGGT ATGTGGTCCAGCAAGGAACGGCAGGGTGTCCTCAGACAGGT < 41bp 0.819363988584192 0.519861868977617 NA NA prediction 0.599004239213148 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201294948 chr1:201294947 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7370 0 0 0 0 2 PKP1 chr1:201294882 3'AG 201294882 Downstream 66bp 7166 chr1 201294947 201294947 1 + T G COAD 201294948 + 201294928 201294968 41 ATGTGGTCCAGCAAGGAACTGCAGGGTGTCCTCAGACAGGT ATGTGGTCCAGCAAGGAACGGCAGGGTGTCCTCAGACAGGT < 41bp 0.819363988584192 0.519861868977617 NA NA prediction 0.599004239213148 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201294948 chr1:201294947 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7370 0 0 0 0 2 PKP1 chr1:201294966 5'GT 201294966 Upstream 20bp 7167 chr16 31051103 31051103 1 + T G GBM 31051104 + 31051084 31051124 41 TCCTCCTAGCAGTCATCATTGGCGTCACAGTGGTTGGATAA TCCTCCTAGCAGTCATCATGGGCGTCACAGTGGTTGGATAA < 41bp 0.82872391131229 0.529223373711227 NA NA prediction 0.599001075202126 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31051104 chr16:31051103 nonsynonymous SNV 0.270 1 20 hm7G_associated_SNPs_7371 0 0 1 0 2 STX4 chr16:31051044 3'AG 31051044 Downstream 60bp 7168 chr16 31051103 31051103 1 + T G GBM 31051104 + 31051084 31051124 41 TCCTCCTAGCAGTCATCATTGGCGTCACAGTGGTTGGATAA TCCTCCTAGCAGTCATCATGGGCGTCACAGTGGTTGGATAA < 41bp 0.82872391131229 0.529223373711227 NA NA prediction 0.599001075202126 Functional Loss - STX4 ENSG00000103496 CDS Human protein_coding chr16:31051104 chr16:31051103 nonsynonymous SNV 0.270 1 20 hm7G_associated_SNPs_7371 0 0 1 0 2 STX4 chr16:31051139 5'GT 31051139 Upstream 37bp 7169 chr21 43963599 43963599 1 + T G SKCM 43963600 + 43963580 43963620 41 ACCTCCGTGGGCAACATCTTGGGGTCATTGATCGCTGGCTA ACCTCCGTGGGCAACATCTGGGGGTCATTGATCGCTGGCTA < 41bp 0.799379912686386 0.468388576138699 NA NA prediction 0.598759825372773 Functional Loss - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43963600 chr21:43963599 nonsynonymous SNV 0.615 3 20 hm7G_associated_SNPs_7372 0 0 0 0 1 SLC37A1 chr21:43963546 3'AG 43963546 Downstream 54bp 7170 chr22 30067882 30067882 1 + T G STAD 30067883 + 30067863 30067903 41 GAACGCACGAGGGATGAGTTGGAGAGGAGGCTGCTGCAGAT GAACGCACGAGGGATGAGTGGGAGAGGAGGCTGCTGCAGAT < 41bp 0.799192659775652 0.494679750959529 NA NA prediction 0.598385319551305 Functional Loss - NF2 ENSG00000186575 CDS Human protein_coding chr22:30067883 chr22:30067882 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_7374 0 0 1 0 2 NF2 chr22:30067815 3'AG 30067815 Downstream 68bp 7171 chr22 30067882 30067882 1 + T G STAD 30067883 + 30067863 30067903 41 GAACGCACGAGGGATGAGTTGGAGAGGAGGCTGCTGCAGAT GAACGCACGAGGGATGAGTGGGAGAGGAGGCTGCTGCAGAT < 41bp 0.799192659775652 0.494679750959529 NA NA prediction 0.598385319551305 Functional Loss - NF2 ENSG00000186575 CDS Human protein_coding chr22:30067883 chr22:30067882 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_7374 0 0 1 0 2 NF2 chr22:30067937 5'GT 30067937 Upstream 56bp 7172 chrX 70511743 70511743 1 + T G KIRC 70511744 + 70511724 70511764 41 GACATCACTGAGGAAGAAATGAGGAAACTATTTGAGAAATA GACATCACTGAGGAAGAAAGGAGGAAACTATTTGAGAAATA < 41bp 0.807168989077048 0.508205759063451 NA NA prediction 0.597926460027194 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70511744 chrX:70511743 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7378 0 0 0 0 1 NONO chrX:70511822 5'GT 70511822 Upstream 80bp 7173 chr19 17983403 17983403 1 + T G UCEC 17983404 + 17983384 17983424 41 AAGTTCCTCTGGATGTGCCTGGGCCAGCTTCTGAACTCGGT AAGTTCCTCTGGATGTGCCGGGGCCAGCTTCTGAACTCGGT < 41bp 0.824064985303764 0.525118173850517 NA NA prediction 0.597893622906494 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17983404 chr19:17983403 nonsynonymous SNV 0.703 3 20 hm7G_associated_SNPs_7379 0 0 0 0 1 SLC5A5 chr19:17983485 5'GT 17983485 Upstream 83bp 7174 chr2 36749401 36749401 1 + T G rs544994188 36749402 + 36749382 36749422 41 TCTCTGAGTCCTGCCCTTCTGTATCCTGTGAAAGACCTGTC TCTCTGAGTCCTGCCCTTCGGTATCCTGTGAAAGACCTGTC < 41bp 0.798807325987188 0.493131649265518 NA NA prediction 0.597614651974377 Functional Loss - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36749402 chr2:36749401 synonymous SNV . 0 20 hm7G_associated_SNPs_7380 0 0 1 0 1 CRIM1 chr2:36749456 5'GT 36749456 Upstream 56bp 7175 chr2 203818776 203818776 1 + T G KIRC 203818777 + 203818757 203818797 41 AACTTACCAACTGTAAGAGTGGATACTCTAGCAGACAATAC AACTTACCAACTGTAAGAGGGGATACTCTAGCAGACAATAC < 41bp 0.806747762953609 0.5081151779293 NA NA prediction 0.597265170048619 Functional Loss - CARF ENSG00000138380 CDS Human protein_coding chr2:203818777 chr2:203818776 nonsynonymous SNV 0.055 1 20 hm7G_associated_SNPs_7381 0 0 0 1 2 CARF chr2:203818728 3'AG 203818728 Downstream 49bp 7176 chr2 203818776 203818776 1 + T G KIRC 203818777 + 203818757 203818797 41 AACTTACCAACTGTAAGAGTGGATACTCTAGCAGACAATAC AACTTACCAACTGTAAGAGGGGATACTCTAGCAGACAATAC < 41bp 0.806747762953609 0.5081151779293 NA NA prediction 0.597265170048619 Functional Loss - CARF ENSG00000138380 CDS Human protein_coding chr2:203818777 chr2:203818776 nonsynonymous SNV 0.055 1 20 hm7G_associated_SNPs_7381 0 0 0 1 2 CARF chr2:203818857 5'GT 203818857 Upstream 82bp 7177 chr20 31671246 31671246 1 + T G COAD 31671247 + 31671227 31671267 41 ATACCAACGGCAAAAAACTTGATGGTATTTACCAGTATGGT ATACCAACGGCAAAAAACTGGATGGTATTTACCAGTATGGT < 41bp 0.798578226244752 0.487418676291244 NA NA prediction 0.597156452489504 Functional Loss - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31671247 chr20:31671246 synonymous SNV . 0 20 hm7G_associated_SNPs_7383 0 0 0 0 1 BPIFB4 chr20:31671173 3'AG 31671173 Downstream 74bp 7178 chr17 73512884 73512884 1 + T G rs8079373 73512885 + 73512865 73512905 41 AGCTGCCCCAGCGCTCGCATGGCCCCAAGGACTTTCTGCCC AGCTGCCCCAGCGCTCGCAGGGCCCCAAGGACTTTCTGCCC < 41bp 0.798524159164481 0.471051623178036 NA NA prediction 0.597048318328961 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73512885 chr17:73512884 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7385 2 0 1 0 1 TSEN54 chr17:73512827 3'AG 73512827 Downstream 58bp 7179 chr1 160325486 160325486 1 + T G LUSC 160325487 + 160325467 160325507 41 ACTGCTGAGAACATTAATGTGAGCTATCCCGAATGGCTGAG ACTGCTGAGAACATTAATGGGAGCTATCCCGAATGGCTGAG < 41bp 0.798404207097154 0.475323057058902 NA NA prediction 0.596808414194308 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160325487 chr1:160325486 nonsynonymous SNV 0.921 0 20 hm7G_associated_SNPs_7386 0 0 1 0 2 NCSTN chr1:160325445 3'AG 160325445 Downstream 42bp 7180 chr1 160325486 160325486 1 + T G LUSC 160325487 + 160325467 160325507 41 ACTGCTGAGAACATTAATGTGAGCTATCCCGAATGGCTGAG ACTGCTGAGAACATTAATGGGAGCTATCCCGAATGGCTGAG < 41bp 0.798404207097154 0.475323057058902 NA NA prediction 0.596808414194308 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160325487 chr1:160325486 nonsynonymous SNV 0.921 0 20 hm7G_associated_SNPs_7386 0 0 1 0 2 NCSTN chr1:160325547 5'GT 160325547 Upstream 62bp 7181 chr7 99798772 99798772 1 + T G LUSC 99798773 + 99798753 99798793 41 CCACTCTGAAACGCCTCTCTGCCTTCTACAAGTGAGTGGCT CCACTCTGAAACGCCTCTCGGCCTTCTACAAGTGAGTGGCT < 41bp 0.798399124166553 0.477469119769388 NA NA prediction 0.596798248333105 Functional Loss - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99798773 chr7:99798772 synonymous SNV . 0 20 hm7G_associated_SNPs_7387 0 0 0 0 2 STAG3 chr7:99798713 3'AG 99798713 Downstream 60bp 7182 chr7 99798772 99798772 1 + T G LUSC 99798773 + 99798753 99798793 41 CCACTCTGAAACGCCTCTCTGCCTTCTACAAGTGAGTGGCT CCACTCTGAAACGCCTCTCGGCCTTCTACAAGTGAGTGGCT < 41bp 0.798399124166553 0.477469119769388 NA NA prediction 0.596798248333105 Functional Loss - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99798773 chr7:99798772 synonymous SNV . 0 20 hm7G_associated_SNPs_7387 0 0 0 0 2 STAG3 chr7:99798783 5'GT 99798783 Upstream 12bp 7183 chr11 18288454 18288454 1 + T G OV 18288455 + 18288435 18288475 41 ATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCCT ATGAAGCTTCTCACGGGCCGGGTTTTCTGCTCCTTGGTCCT < 41bp 0.817778506114664 0.519422783731 NA NA prediction 0.596711444767328 Functional Loss - SAA1 ENSG00000173432 CDS Human protein_coding chr11:18288455 chr11:18288454 nonsynonymous SNV 0.582 2 20 hm7G_associated_SNPs_7390 0 0 0 1 2 SAA1 chr11:18288431 3'AG 18288431 Downstream 24bp 7184 chr11 18288454 18288454 1 + T G OV 18288455 + 18288435 18288475 41 ATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCCT ATGAAGCTTCTCACGGGCCGGGTTTTCTGCTCCTTGGTCCT < 41bp 0.817778506114664 0.519422783731 NA NA prediction 0.596711444767328 Functional Loss - SAA1 ENSG00000173432 CDS Human protein_coding chr11:18288455 chr11:18288454 nonsynonymous SNV 0.582 2 20 hm7G_associated_SNPs_7390 0 0 0 1 2 SAA1 chr11:18288525 5'GT 18288525 Upstream 72bp 7185 chr12 52307765 52307765 1 + T G BRCA 52307766 + 52307746 52307786 41 CCGTACCCCCAGGACCTCCTGGACAGTGACTGCACCACAGG CCGTACCCCCAGGACCTCCGGGACAGTGACTGCACCACAGG < 41bp 0.798334194443614 0.467409001682947 NA NA prediction 0.596668388887228 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52307766 chr12:52307765 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_7391 0 0 0 0 2 ACVRL1 chr12:52307758 3'AG 52307758 Downstream 8bp 7186 chr12 52307765 52307765 1 + T G BRCA 52307766 + 52307746 52307786 41 CCGTACCCCCAGGACCTCCTGGACAGTGACTGCACCACAGG CCGTACCCCCAGGACCTCCGGGACAGTGACTGCACCACAGG < 41bp 0.798334194443614 0.467409001682947 NA NA prediction 0.596668388887228 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52307766 chr12:52307765 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_7391 0 0 0 0 2 ACVRL1 chr12:52307857 5'GT 52307857 Upstream 93bp 7187 chr7 100479340 100479340 1 + T G COAD 100479341 + 100479321 100479361 41 TGCCCTATGCTGGGGGGGGTGGGGGCCCAACTTATGGCCCC TGCCCTATGCTGGGGGGGGGGGGGGCCCAACTTATGGCCCC < 41bp 0.7982426135809 0.473436536251295 NA NA prediction 0.5964852271618 Functional Loss - SRRT ENSG00000087087 CDS Human protein_coding chr7:100479341 chr7:100479340 synonymous SNV . 0 20 hm7G_associated_SNPs_7392 0 0 1 0 2 SRRT chr7:100479280 3'AG 100479280 Downstream 61bp 7188 chr7 100479340 100479340 1 + T G COAD 100479341 + 100479321 100479361 41 TGCCCTATGCTGGGGGGGGTGGGGGCCCAACTTATGGCCCC TGCCCTATGCTGGGGGGGGGGGGGGCCCAACTTATGGCCCC < 41bp 0.7982426135809 0.473436536251295 NA NA prediction 0.5964852271618 Functional Loss - SRRT ENSG00000087087 CDS Human protein_coding chr7:100479341 chr7:100479340 synonymous SNV . 0 20 hm7G_associated_SNPs_7392 0 0 1 0 2 SRRT chr7:100479426 5'GT 100479426 Upstream 87bp 7189 chr7 107542790 107542790 1 + T G COAD 107542791 + 107542771 107542811 41 CAGTCTGCATTGAGAAAAATGAAACACTTGGTGGAACATGC CAGTCTGCATTGAGAAAAAGGAAACACTTGGTGGAACATGC < 41bp 0.798460887361059 0.500241886439944 NA NA prediction 0.596438001842229 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107542791 chr7:107542790 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7393 0 0 1 0 2 DLD chr7:107542770 3'AG 107542770 Downstream 21bp 7190 chr7 107542790 107542790 1 + T G COAD 107542791 + 107542771 107542811 41 CAGTCTGCATTGAGAAAAATGAAACACTTGGTGGAACATGC CAGTCTGCATTGAGAAAAAGGAAACACTTGGTGGAACATGC < 41bp 0.798460887361059 0.500241886439944 NA NA prediction 0.596438001842229 Functional Loss - DLD ENSG00000091140 CDS Human protein_coding chr7:107542791 chr7:107542790 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7393 0 0 1 0 2 DLD chr7:107542838 5'GT 107542838 Upstream 49bp 7191 chr13 48830411 48830411 1 + T G LUSC 48830412 + 48830392 48830432 41 CTGCTCTCTACCAGACAATTGAAGAAAATATTAAAATCTTT CTGCTCTCTACCAGACAATGGAAGAAAATATTAAAATCTTT < 41bp 0.799003618983083 0.500818312750477 NA NA prediction 0.596370612465212 Functional Loss - ITM2B ENSG00000136156 CDS Human protein_coding chr13:48830412 chr13:48830411 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_7394 0 0 1 0 1 ITM2B chr13:48830313 3'AG 48830313 Downstream 99bp 7192 chrX 155227423 155227423 1 + T G ESCA 155227424 + 155227404 155227444 41 TGGGGATGCCTCAGACTTGTGATGGGACTGGGCAGATGCAT TGGGGATGCCTCAGACTTGGGATGGGACTGGGCAGATGCAT < 41bp 0.814083169519428 0.516051918894711 NA NA prediction 0.596062501249434 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155227424 chrX:155227423 nonsynonymous SNV 0.098 2 20 hm7G_associated_SNPs_7395 0 0 0 0 1 IL9R chrX:155227452 5'GT 155227452 Upstream 30bp 7193 chr14 67664950 67664950 1 + T G UCEC 67664951 + 67664931 67664971 41 TCTGCACCCCACACTCCCATGATCCGAGAGATCTTCAAAAT TCTGCACCCCACACTCCCAGGATCCGAGAGATCTTCAAAAT < 41bp 0.797982278239452 0.483356311508319 NA NA prediction 0.595964556478903 Functional Loss - FAM71D ENSG00000172717 CDS Human protein_coding chr14:67664951 chr14:67664950 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7397 0 0 0 0 2 FAM71D chr14:67664853 3'AG 67664853 Downstream 98bp 7194 chr14 67664950 67664950 1 + T G UCEC 67664951 + 67664931 67664971 41 TCTGCACCCCACACTCCCATGATCCGAGAGATCTTCAAAAT TCTGCACCCCACACTCCCAGGATCCGAGAGATCTTCAAAAT < 41bp 0.797982278239452 0.483356311508319 NA NA prediction 0.595964556478903 Functional Loss - FAM71D ENSG00000172717 CDS Human protein_coding chr14:67664951 chr14:67664950 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7397 0 0 0 0 2 FAM71D chr14:67665037 5'GT 67665037 Upstream 88bp 7195 chr1 44084309 44084309 1 + T G LUSC 44084310 + 44084290 44084330 41 TCCTCCTGCAGGTAAAATGTGATCAGTACTGGCCAGCCCGT TCCTCCTGCAGGTAAAATGGGATCAGTACTGGCCAGCCCGT < 41bp 0.822301874287689 0.524374566451889 NA NA prediction 0.5958546156716 Functional Loss - PTPRF ENSG00000142949 CDS Human protein_coding chr1:44084310 chr1:44084309 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_7398 0 0 1 0 1 PTPRF chr1:44084301 3'AG 44084301 Downstream 9bp 7196 chr12 109495820 109495820 1 + T G SKCM 109495821 + 109495801 109495841 41 CTGTCCTGCTTTCATCAGGTGGCTGGAAGAGTTCACCTCCC CTGTCCTGCTTTCATCAGGGGGCTGGAAGAGTTCACCTCCC < 41bp 0.797760995524871 0.477472447107581 NA NA prediction 0.595521991049742 Functional Loss - USP30 ENSG00000135093 CDS Human protein_coding chr12:109495821 chr12:109495820 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7401 0 0 1 0 2 USP30 chr12:109495731 3'AG 109495731 Downstream 90bp 7197 chr12 109495820 109495820 1 + T G SKCM 109495821 + 109495801 109495841 41 CTGTCCTGCTTTCATCAGGTGGCTGGAAGAGTTCACCTCCC CTGTCCTGCTTTCATCAGGGGGCTGGAAGAGTTCACCTCCC < 41bp 0.797760995524871 0.477472447107581 NA NA prediction 0.595521991049742 Functional Loss - USP30 ENSG00000135093 CDS Human protein_coding chr12:109495821 chr12:109495820 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7401 0 0 1 0 2 USP30 chr12:109495913 5'GT 109495913 Upstream 94bp 7198 chr19 860929 860929 1 + T G KIRP 860930 + 860910 860950 41 CCGGAGCCCTCCAAGCGCCTGTACGACGTGCTCCGCGCAGT CCGGAGCCCTCCAAGCGCCGGTACGACGTGCTCCGCGCAGT < 41bp 0.819493566762006 0.521794089641161 NA NA prediction 0.595398954241692 Functional Loss - CFD ENSG00000197766 CDS Human protein_coding chr19:860930 chr19:860929 nonsynonymous SNV 0.067 2 20 hm7G_associated_SNPs_7402 0 0 1 0 2 CFD chr19:860861 3'AG 860861 Downstream 69bp 7199 chr19 860929 860929 1 + T G KIRP 860930 + 860910 860950 41 CCGGAGCCCTCCAAGCGCCTGTACGACGTGCTCCGCGCAGT CCGGAGCCCTCCAAGCGCCGGTACGACGTGCTCCGCGCAGT < 41bp 0.819493566762006 0.521794089641161 NA NA prediction 0.595398954241692 Functional Loss - CFD ENSG00000197766 CDS Human protein_coding chr19:860930 chr19:860929 nonsynonymous SNV 0.067 2 20 hm7G_associated_SNPs_7402 0 0 1 0 2 CFD chr19:861005 5'GT 861005 Upstream 77bp 7200 chr22 42418336 42418336 1 + T G SKCM 42418337 + 42418317 42418357 41 TACTGGGGAAGGGAATATGTGCACTCCACAGATGCCTTGTT TACTGGGGAAGGGAATATGGGCACTCCACAGATGCCTTGTT < 41bp 0.797668108355305 0.492022504154976 NA NA prediction 0.59533621671061 Functional Loss - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42418337 chr22:42418336 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_7403 0 0 0 2 2 WBP2NL chr22:42418253 3'AG 42418253 Downstream 84bp 7201 chr22 42418336 42418336 1 + T G SKCM 42418337 + 42418317 42418357 41 TACTGGGGAAGGGAATATGTGCACTCCACAGATGCCTTGTT TACTGGGGAAGGGAATATGGGCACTCCACAGATGCCTTGTT < 41bp 0.797668108355305 0.492022504154976 NA NA prediction 0.59533621671061 Functional Loss - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42418337 chr22:42418336 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_7403 0 0 0 2 2 WBP2NL chr22:42418360 5'GT 42418360 Upstream 25bp 7202 chr11 5663668 5663668 1 + T G UCEC 5663669 + 5663649 5663689 41 AGGCTGAAAAAGCCAAAAATGGTTTCCAAGAAACTGAAGAC AGGCTGAAAAAGCCAAAAAGGGTTTCCAAGAAACTGAAGAC < 41bp 0.823175025556643 0.525658881765733 NA NA prediction 0.595032287581818 Functional Loss - TRIM34;TRIM6-TRIM34 ENSG00000258588;ENSG00000258659 CDS Human other chr11:5663669 chr11:5663668 nonsynonymous SNV 0.102 1 20 hm7G_associated_SNPs_7405 0 0 0 0 2 TRIM34;TRIM6-TRIM34 chr11:5663636 3'AG 5663636 Downstream 33bp 7203 chr11 5663668 5663668 1 + T G UCEC 5663669 + 5663649 5663689 41 AGGCTGAAAAAGCCAAAAATGGTTTCCAAGAAACTGAAGAC AGGCTGAAAAAGCCAAAAAGGGTTTCCAAGAAACTGAAGAC < 41bp 0.823175025556643 0.525658881765733 NA NA prediction 0.595032287581818 Functional Loss - TRIM34;TRIM6-TRIM34 ENSG00000258588;ENSG00000258659 CDS Human other chr11:5663669 chr11:5663668 nonsynonymous SNV 0.102 1 20 hm7G_associated_SNPs_7405 0 0 0 0 2 TRIM34;TRIM6-TRIM34 chr11:5663736 5'GT 5663736 Upstream 69bp 7204 chr9 116183480 116183480 1 + T G UCEC 116183481 + 116183461 116183501 41 GAAGAAACAGAGATACATGTGAGGTGAGTATCATATCTGGA GAAGAAACAGAGATACATGGGAGGTGAGTATCATATCTGGA < 41bp 0.802397749976863 0.50490403290545 NA NA prediction 0.594987434142826 Functional Loss - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116183481 chr9:116183480 nonsynonymous SNV 0.197 0 20 hm7G_associated_SNPs_7406 0 0 0 0 2 C9orf43 chr9:116183383 3'AG 116183383 Downstream 98bp 7205 chr9 116183480 116183480 1 + T G UCEC 116183481 + 116183461 116183501 41 GAAGAAACAGAGATACATGTGAGGTGAGTATCATATCTGGA GAAGAAACAGAGATACATGGGAGGTGAGTATCATATCTGGA < 41bp 0.802397749976863 0.50490403290545 NA NA prediction 0.594987434142826 Functional Loss - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116183481 chr9:116183480 nonsynonymous SNV 0.197 0 20 hm7G_associated_SNPs_7406 0 0 0 0 2 C9orf43 chr9:116183483 5'GT 116183483 Upstream 4bp 7206 chr3 186335000 186335000 1 + T G SKCM 186335001 + 186334981 186335021 41 GCCGAGGACGTGCGCAAGGTGTGCCAAGACTGCCCCCTGCT GCCGAGGACGTGCGCAAGGGGTGCCAAGACTGCCCCCTGCT < 41bp 0.828055846854857 0.530607950259755 NA NA prediction 0.594895793190203 Functional Loss - AHSG ENSG00000145192 CDS Human protein_coding chr3:186335001 chr3:186335000 nonsynonymous SNV 0.534 2 20 hm7G_associated_SNPs_7407 0 0 1 0 1 AHSG chr3:186334976 3'AG 186334976 Downstream 25bp 7207 chr2 103130618 103130618 1 + T G UCEC 103130619 + 103130599 103130639 41 ACCTACCCAAATCAAGCATTGTTTCTTTGTACAAGAAGCTG ACCTACCCAAATCAAGCATGGTTTCTTTGTACAAGAAGCTG < 41bp 0.809517046854762 0.512137515350383 NA NA prediction 0.594759063008758 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103130619 chr2:103130618 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_7409 0 0 0 0 2 SLC9A4 chr2:103130549 3'AG 103130549 Downstream 70bp 7208 chr2 103130618 103130618 1 + T G UCEC 103130619 + 103130599 103130639 41 ACCTACCCAAATCAAGCATTGTTTCTTTGTACAAGAAGCTG ACCTACCCAAATCAAGCATGGTTTCTTTGTACAAGAAGCTG < 41bp 0.809517046854762 0.512137515350383 NA NA prediction 0.594759063008758 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103130619 chr2:103130618 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_7409 0 0 0 0 2 SLC9A4 chr2:103130710 5'GT 103130710 Upstream 93bp 7209 chr1 11589736 11589736 1 + T G SKCM 11589737 + 11589717 11589757 41 GCTTCTTCTTCGTGCCTAGTGAGAAAGGTACGGCAAGGGCA GCTTCTTCTTCGTGCCTAGGGAGAAAGGTACGGCAAGGGCA < 41bp 0.829801828099938 0.532572784489071 NA NA prediction 0.594458087221734 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589737 chr1:11589736 nonsynonymous SNV 0.906 4 20 hm7G_associated_SNPs_7411 0 0 0 0 1 DISP3 chr1:11589743 5'GT 11589743 Upstream 8bp 7210 chr4 187195291 187195291 1 + T G UCEC 187195292 + 187195272 187195312 41 TGCAACAAAGACATTTATGTGGACCTAGACATGAAGGGCAT TGCAACAAAGACATTTATGGGGACCTAGACATGAAGGGCAT < 41bp 0.798105950431474 0.500894203570378 NA NA prediction 0.594423493722192 Functional Loss - F11 ENSG00000088926 CDS Human protein_coding chr4:187195292 chr4:187195291 nonsynonymous SNV 0.035 1 20 hm7G_associated_SNPs_7413 0 0 0 0 1 F11 chr4:187195270 3'AG 187195270 Downstream 22bp 7211 chr1 1563691 1563691 1 + T G rs193243389 1563692 + 1563672 1563712 41 GCTCGGGCGCGGCAGCTGGTGGACGCCAAGAAGGAGGACGG GCTCGGGCGCGGCAGCTGGGGGACGCCAAGAAGGAGGACGG < 41bp 0.797119816193703 0.484529228914526 NA NA prediction 0.594239632387407 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1563692 chr1:1563691 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7414 0 0 1 0 2 MIB2 chr1:1563653 3'AG 1563653 Downstream 39bp 7212 chr1 1563691 1563691 1 + T G rs193243389 1563692 + 1563672 1563712 41 GCTCGGGCGCGGCAGCTGGTGGACGCCAAGAAGGAGGACGG GCTCGGGCGCGGCAGCTGGGGGACGCCAAGAAGGAGGACGG < 41bp 0.797119816193703 0.484529228914526 NA NA prediction 0.594239632387407 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1563692 chr1:1563691 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7414 0 0 1 0 2 MIB2 chr1:1563779 5'GT 1563779 Upstream 89bp 7213 chr8 68972959 68972959 1 + T G LUAD 68972960 + 68972940 68972980 41 TTGGAGAGATTCACAGGCCTGAGGAAGGCGTGCACTTGGGA TTGGAGAGATTCACAGGCCGGAGGAAGGCGTGCACTTGGGA < 41bp 0.81925696533348 0.522223933110678 NA NA prediction 0.594066064445604 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68972960 chr8:68972959 synonymous SNV . 0 20 hm7G_associated_SNPs_7415 0 0 0 0 2 PREX2 chr8:68972914 3'AG 68972914 Downstream 46bp 7214 chr8 68972959 68972959 1 + T G LUAD 68972960 + 68972940 68972980 41 TTGGAGAGATTCACAGGCCTGAGGAAGGCGTGCACTTGGGA TTGGAGAGATTCACAGGCCGGAGGAAGGCGTGCACTTGGGA < 41bp 0.81925696533348 0.522223933110678 NA NA prediction 0.594066064445604 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68972960 chr8:68972959 synonymous SNV . 0 20 hm7G_associated_SNPs_7415 0 0 0 0 2 PREX2 chr8:68973014 5'GT 68973014 Upstream 56bp 7215 chr6 36106657 36106657 1 + T G rs150922772 36106658 + 36106638 36106678 41 TTGGCTCTGCCCCTGCAGCTGCGGACCTGCTGGAGAAGATG TTGGCTCTGCCCCTGCAGCGGCGGACCTGCTGGAGAAGATG < 41bp 0.797032562602016 0.477137443516193 NA NA prediction 0.594065125204031 Functional Loss - MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36106658 chr6:36106657 nonsynonymous SNV 0.017 1 20 hm7G_associated_SNPs_7416 0 0 1 0 1 MAPK13 chr6:36106656 3'AG 36106656 Downstream 2bp 7216 chr22 30069442 30069442 1 + T G UCEC 30069443 + 30069423 30069463 41 GTGCTGGAAGCCGAGGTGCTGGCACTGAAGATGGCTGAGGA GTGCTGGAAGCCGAGGTGCGGGCACTGAAGATGGCTGAGGA < 41bp 0.797004006097829 0.497791084876148 NA NA prediction 0.594008012195659 Functional Loss - NF2 ENSG00000186575 CDS Human protein_coding chr22:30069443 chr22:30069442 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_7417 0 0 1 0 1 NF2 chr22:30069475 5'GT 30069475 Upstream 34bp 7217 chr1 150430020 150430020 1 + T G UCEC 150430021 + 150430001 150430041 41 GACATGGAACTCTCAGATGTGGAAGATGATGGGTCAAAAAT GACATGGAACTCTCAGATGGGGAAGATGATGGGTCAAAAAT < 41bp 0.797003541892407 0.485243330161033 NA NA prediction 0.594007083784813 Functional Loss - RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150430021 chr1:150430020 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7418 0 0 1 0 1 RPRD2 chr1:150430046 5'GT 150430046 Upstream 27bp 7218 chr14 66096287 66096287 1 + T G UCEC 66096288 + 66096268 66096308 41 GAAAAAGAGGCCAAAGATCTGACAGAACTGGTTCAGCGGAG GAAAAAGAGGCCAAAGATCGGACAGAACTGGTTCAGCGGAG < 41bp 0.796978648813858 0.497375019332994 NA NA prediction 0.593957297627716 Functional Loss - FUT8 ENSG00000033170 CDS Human protein_coding chr14:66096288 chr14:66096287 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7420 0 0 1 0 2 FUT8 chr14:66096210 3'AG 66096210 Downstream 78bp 7219 chr14 66096287 66096287 1 + T G UCEC 66096288 + 66096268 66096308 41 GAAAAAGAGGCCAAAGATCTGACAGAACTGGTTCAGCGGAG GAAAAAGAGGCCAAAGATCGGACAGAACTGGTTCAGCGGAG < 41bp 0.796978648813858 0.497375019332994 NA NA prediction 0.593957297627716 Functional Loss - FUT8 ENSG00000033170 CDS Human protein_coding chr14:66096288 chr14:66096287 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7420 0 0 1 0 2 FUT8 chr14:66096324 5'GT 66096324 Upstream 38bp 7220 chr15 41859680 41859680 1 + T G SKCM 41859681 + 41859661 41859701 41 TCAGGGTGCGCTGTGCCAATGCCTTGGGGCCCTCTCCCTAT TCAGGGTGCGCTGTGCCAAGGCCTTGGGGCCCTCTCCCTAT < 41bp 0.844162345876393 0.547208322360192 NA NA prediction 0.593908047032401 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41859681 chr15:41859680 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7422 0 0 1 0 1 TYRO3 chr15:41859735 5'GT 41859735 Upstream 56bp 7221 chr14 24648917 24648917 1 + T G BLCA 24648918 + 24648898 24648938 41 GAGCTCGAGCTGCTCTCACTGGAAGCAGTGCACAGGTACCA GAGCTCGAGCTGCTCTCACGGGAAGCAGTGCACAGGTACCA < 41bp 0.838501497783763 0.541685966522392 NA NA prediction 0.593631062522742 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24648918 chr14:24648917 nonsynonymous SNV 0.035 0 20 hm7G_associated_SNPs_7423 0 0 0 0 1 REC8 chr14:24648932 5'GT 24648932 Upstream 16bp 7222 chr8 144644230 144644230 1 + T G UCEC 144644231 + 144644211 144644251 41 GCTTTTGGACAGAGAGCTGTGCCAGCTGCTGCTGGAGGGCC GCTTTTGGACAGAGAGCTGGGCCAGCTGCTGCTGGAGGGCC < 41bp 0.796686556857103 0.465601437931957 NA NA prediction 0.593373113714206 Functional Loss - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144644231 chr8:144644230 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_7424 0 0 1 0 1 GSDMD chr8:144644301 5'GT 144644301 Upstream 72bp 7223 chr17 33496943 33496943 1 + T G BLCA 33496944 + 33496924 33496964 41 AGAAAAACTGGCCAAACAGTGTCGCAAGTAAGGGGGCTGTG AGAAAAACTGGCCAAACAGGGTCGCAAGTAAGGGGGCTGTG < 41bp 0.812751505898642 0.516090300354293 NA NA prediction 0.593322411088698 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496944 chr17:33496943 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7425 0 0 0 0 2 UNC45B chr17:33496856 3'AG 33496856 Downstream 88bp 7224 chr17 33496943 33496943 1 + T G BLCA 33496944 + 33496924 33496964 41 AGAAAAACTGGCCAAACAGTGTCGCAAGTAAGGGGGCTGTG AGAAAAACTGGCCAAACAGGGTCGCAAGTAAGGGGGCTGTG < 41bp 0.812751505898642 0.516090300354293 NA NA prediction 0.593322411088698 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496944 chr17:33496943 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7425 0 0 0 0 2 UNC45B chr17:33496950 5'GT 33496950 Upstream 8bp 7225 chr1 65656435 65656435 1 + T G LUSC 65656436 + 65656416 65656456 41 TATATAGAGAAAAGTCTTTTGGTTCCAGACCATGTGATCAC TATATAGAGAAAAGTCTTTGGGTTCCAGACCATGTGATCAC < 41bp 0.834682972429598 0.538081707427349 NA NA prediction 0.593202530004498 Functional Loss - AK4 ENSG00000162433 CDS Human protein_coding chr1:65656436 chr1:65656435 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7428 0 0 0 0 2 AK4 chr1:65656393 3'AG 65656393 Downstream 43bp 7226 chr1 65656435 65656435 1 + T G LUSC 65656436 + 65656416 65656456 41 TATATAGAGAAAAGTCTTTTGGTTCCAGACCATGTGATCAC TATATAGAGAAAAGTCTTTGGGTTCCAGACCATGTGATCAC < 41bp 0.834682972429598 0.538081707427349 NA NA prediction 0.593202530004498 Functional Loss - AK4 ENSG00000162433 CDS Human protein_coding chr1:65656436 chr1:65656435 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7428 0 0 0 0 2 AK4 chr1:65656512 5'GT 65656512 Upstream 78bp 7227 chr11 20429471 20429471 1 + T G LUSC 20429472 + 20429452 20429492 41 CCTAGGTAGTTTTGGATGTTGGGTGTGGAACTGGAATTCTC CCTAGGTAGTTTTGGATGTGGGGTGTGGAACTGGAATTCTC < 41bp 0.816113495469593 0.519593430184213 NA NA prediction 0.593040130570759 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20429472 chr11:20429471 synonymous SNV . 0 20 hm7G_associated_SNPs_7429 0 0 1 0 1 PRMT3 chr11:20429457 3'AG 20429457 Downstream 15bp 7228 chr6 107011686 107011686 1 + T G BLCA 107011687 + 107011667 107011707 41 TGGGCAGCCTGGTAACATCTGGCTCCAAGCTAGGCCTGGCC TGGGCAGCCTGGTAACATCGGGCTCCAAGCTAGGCCTGGCC < 41bp 0.835270418286309 0.538781108298782 NA NA prediction 0.592978619975054 Functional Loss - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:107011687 chr6:107011686 synonymous SNV . 0 20 hm7G_associated_SNPs_7430 0 0 1 0 1 CRYBG1 chr6:107011639 3'AG 107011639 Downstream 48bp 7229 chr17 42853010 42853010 1 + T G LUAD 42853011 + 42852991 42853031 41 ACCCTGACTCACGACGCCATGTGCAGCGACGGGCTCTGCTG ACCCTGACTCACGACGCCAGGTGCAGCGACGGGCTCTGCTG < 41bp 0.796269364830634 0.472522503760584 NA NA prediction 0.592538729661269 Functional Loss - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42853011 chr17:42853010 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7432 0 0 0 0 2 ADAM11 chr17:42852952 3'AG 42852952 Downstream 59bp 7230 chr17 42853010 42853010 1 + T G LUAD 42853011 + 42852991 42853031 41 ACCCTGACTCACGACGCCATGTGCAGCGACGGGCTCTGCTG ACCCTGACTCACGACGCCAGGTGCAGCGACGGGCTCTGCTG < 41bp 0.796269364830634 0.472522503760584 NA NA prediction 0.592538729661269 Functional Loss - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42853011 chr17:42853010 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7432 0 0 0 0 2 ADAM11 chr17:42853044 5'GT 42853044 Upstream 35bp 7231 chr17 26864189 26864189 1 + T G UCEC 26864190 + 26864170 26864210 41 GCCCTCGACCCCCTGGTACTGGTGACCTCATCCCCGACATC GCCCTCGACCCCCTGGTACGGGTGACCTCATCCCCGACATC < 41bp 0.813157177889181 0.516959756716418 NA NA prediction 0.592394842345527 Functional Loss - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26864190 chr17:26864189 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7433 0 0 0 0 1 FOXN1 chr17:26864135 3'AG 26864135 Downstream 55bp 7232 chr19 49869051 49869051 1 + T G rs2303759 49869052 + 49869032 49869072 41 CTCATCGGATCCTCACAGATGACCGACAACAAGACAGGAGA CTCATCGGATCCTCACAGAGGACCGACAACAAGACAGGAGA < 41bp 0.820642258199358 0.524498998188124 NA NA prediction 0.592286520022467 Functional Loss - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49869052 chr19:49869051 nonsynonymous SNV 0.902 1 20 hm7G_associated_SNPs_7434 0 1 0 0 2 DKKL1 chr19:49869050 3'AG 49869050 Downstream 2bp 7233 chr19 49869051 49869051 1 + T G rs2303759 49869052 + 49869032 49869072 41 CTCATCGGATCCTCACAGATGACCGACAACAAGACAGGAGA CTCATCGGATCCTCACAGAGGACCGACAACAAGACAGGAGA < 41bp 0.820642258199358 0.524498998188124 NA NA prediction 0.592286520022467 Functional Loss - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49869052 chr19:49869051 nonsynonymous SNV 0.902 1 20 hm7G_associated_SNPs_7434 0 1 0 0 2 DKKL1 chr19:49869142 5'GT 49869142 Upstream 92bp 7234 chr4 166929126 166929126 1 + T G ESCA 166929127 + 166929107 166929147 41 ATTTTCTGAAGATGGAGCCTGGAGAAGTAAACTCACTTGGA ATTTTCTGAAGATGGAGCCGGGAGAAGTAAACTCACTTGGA < 41bp 0.804046075177673 0.507979840622549 NA NA prediction 0.592132469110247 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166929127 chr4:166929126 synonymous SNV . 0 20 hm7G_associated_SNPs_7435 0 0 0 0 2 TLL1 chr4:166929095 3'AG 166929095 Downstream 32bp 7235 chr4 166929126 166929126 1 + T G ESCA 166929127 + 166929107 166929147 41 ATTTTCTGAAGATGGAGCCTGGAGAAGTAAACTCACTTGGA ATTTTCTGAAGATGGAGCCGGGAGAAGTAAACTCACTTGGA < 41bp 0.804046075177673 0.507979840622549 NA NA prediction 0.592132469110247 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166929127 chr4:166929126 synonymous SNV . 0 20 hm7G_associated_SNPs_7435 0 0 0 0 2 TLL1 chr4:166929200 5'GT 166929200 Upstream 75bp 7236 chr19 50045922 50045922 1 + T G SKCM 50045923 + 50045903 50045943 41 ATGGGCACCTGGATGGGAGTGAGGTGGGCCACTGGGTGCTG ATGGGCACCTGGATGGGAGGGAGGTGGGCCACTGGGTGCTG < 41bp 0.79606545212465 0.475733788184376 NA NA prediction 0.5921309042493 Functional Loss - RCN3 ENSG00000142552 CDS Human protein_coding chr19:50045923 chr19:50045922 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_7436 0 0 1 0 1 RCN3 chr19:50046009 5'GT 50046009 Upstream 88bp 7237 chr15 51285604 51285604 1 + T G KIRP 51285605 + 51285585 51285625 41 GGAAGGTATAAAGAAATTGTGGGGGAAAGAAGGCTATCTTC GGAAGGTATAAAGAAATTGGGGGGGAAAGAAGGCTATCTTC < 41bp 0.79599007647313 0.489448360735969 NA NA prediction 0.591980152946259 Functional Loss - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51285605 chr15:51285604 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7437 0 0 1 0 1 AP4E1 chr15:51285567 3'AG 51285567 Downstream 38bp 7238 chr9 133542151 133542151 1 + T G OV 133542152 + 133542132 133542172 41 GTGATCGCCCCGGAGCACGTGGACATCTGCAAGAACAACAA GTGATCGCCCCGGAGCACGGGGACATCTGCAAGAACAACAA < 41bp 0.846464313231223 0.550507076968124 NA NA prediction 0.591914472526199 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133542152 chr9:133542151 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_7439 0 0 0 0 1 PRDM12 chr9:133542185 5'GT 133542185 Upstream 35bp 7239 chr16 23672543 23672543 1 + T G UCS 23672544 + 23672524 23672564 41 TGTCTTTATTGAGGAAGATTGTGTGGTCAACGCAGCACAGA TGTCTTTATTGAGGAAGATGGTGTGGTCAACGCAGCACAGA < 41bp 0.795892038706395 0.491656860000474 NA NA prediction 0.59178407741279 Functional Loss - DCTN5 ENSG00000166847 CDS Human protein_coding chr16:23672544 chr16:23672543 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7440 0 0 1 0 1 DCTN5 chr16:23672602 5'GT 23672602 Upstream 60bp 7240 chrX 86888799 86888799 1 + T G UCEC 86888800 + 86888780 86888820 41 TGTAGGTGGTCATGATGGATGGAGCTATCTAAATACTGTAG TGTAGGTGGTCATGATGGAGGGAGCTATCTAAATACTGTAG < 41bp 0.795889988939381 0.49261581365779 NA NA prediction 0.591779977878762 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86888800 chrX:86888799 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7441 0 0 0 0 1 KLHL4 chrX:86888749 3'AG 86888749 Downstream 51bp 7241 chr19 54483182 54483182 1 + T G COAD 54483183 + 54483163 54483203 41 TCCTGCTGCTGCTCGGGGGTGTGTGCGTGGCGGCCTCCCGC TCCTGCTGCTGCTCGGGGGGGTGTGCGTGGCGGCCTCCCGC < 41bp 0.795812785882349 0.482438433174378 NA NA prediction 0.591625571764698 Functional Loss - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54483183 chr19:54483182 synonymous SNV . 0 20 hm7G_associated_SNPs_7443 0 0 1 0 2 CACNG8 chr19:54483121 3'AG 54483121 Downstream 62bp 7242 chr19 54483182 54483182 1 + T G COAD 54483183 + 54483163 54483203 41 TCCTGCTGCTGCTCGGGGGTGTGTGCGTGGCGGCCTCCCGC TCCTGCTGCTGCTCGGGGGGGTGTGCGTGGCGGCCTCCCGC < 41bp 0.795812785882349 0.482438433174378 NA NA prediction 0.591625571764698 Functional Loss - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54483183 chr19:54483182 synonymous SNV . 0 20 hm7G_associated_SNPs_7443 0 0 1 0 2 CACNG8 chr19:54483261 5'GT 54483261 Upstream 80bp 7243 chr3 89390112 89390112 1 + T G HNSC 89390113 + 89390093 89390133 41 TGGATGGTAATATGAAGTGTGCTAAGTGCCCGCCTCACAGT TGGATGGTAATATGAAGTGGGCTAAGTGCCCGCCTCACAGT < 41bp 0.795722438394313 0.492435176310465 NA NA prediction 0.591444876788627 Functional Loss - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89390113 chr3:89390112 nonsynonymous SNV 0.848 3 20 hm7G_associated_SNPs_7444 0 0 1 0 1 EPHA3 chr3:89390066 3'AG 89390066 Downstream 47bp 7244 chr12 50035713 50035713 1 + T G rs542772866 50035714 + 50035694 50035734 41 CGGGGCTTCTGCGTGGAGGTGAACACGGCCTTTGAGGACTT CGGGGCTTCTGCGTGGAGGGGAACACGGCCTTTGAGGACTT < 41bp 0.83098766613067 0.535333705363842 NA NA prediction 0.591307921533658 Functional Loss - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50035714 chr12:50035713 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7447 0 0 1 0 2 PRPF40B chr12:50035691 3'AG 50035691 Downstream 23bp 7245 chr12 50035713 50035713 1 + T G rs542772866 50035714 + 50035694 50035734 41 CGGGGCTTCTGCGTGGAGGTGAACACGGCCTTTGAGGACTT CGGGGCTTCTGCGTGGAGGGGAACACGGCCTTTGAGGACTT < 41bp 0.83098766613067 0.535333705363842 NA NA prediction 0.591307921533658 Functional Loss - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50035714 chr12:50035713 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7447 0 0 1 0 2 PRPF40B chr12:50035712 3'AG 50035712 Downstream 2bp 7246 chr8 2071508 2071508 1 + T G rs147916699 2071509 + 2071489 2071529 41 TGTCCATCCTTGAAATAGCTGGCAAAGGTAAAAGAAAACCT TGTCCATCCTTGAAATAGCGGGCAAAGGTAAAAGAAAACCT < 41bp 0.808752577773888 0.513135761755187 NA NA prediction 0.591233632037402 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2071509 chr8:2071508 synonymous SNV . 0 20 hm7G_associated_SNPs_7448 0 0 0 0 2 MYOM2 chr8:2071428 3'AG 2071428 Downstream 81bp 7247 chr8 2071508 2071508 1 + T G rs147916699 2071509 + 2071489 2071529 41 TGTCCATCCTTGAAATAGCTGGCAAAGGTAAAAGAAAACCT TGTCCATCCTTGAAATAGCGGGCAAAGGTAAAAGAAAACCT < 41bp 0.808752577773888 0.513135761755187 NA NA prediction 0.591233632037402 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2071509 chr8:2071508 synonymous SNV . 0 20 hm7G_associated_SNPs_7448 0 0 0 0 2 MYOM2 chr8:2071515 5'GT 2071515 Upstream 8bp 7248 chr4 160262761 160262761 1 + T G CHOL 160262762 + 160262742 160262782 41 CAGAAACTCTTTGTTCAGATGAAGATGCTCAGGAGTTGTTG CAGAAACTCTTTGTTCAGAGGAAGATGCTCAGGAGTTGTTG < 41bp 0.805440683039723 0.509881444474523 NA NA prediction 0.591118477130401 Functional Loss - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160262762 chr4:160262761 nonsynonymous SNV 0.623 3 20 hm7G_associated_SNPs_7449 0 0 0 0 1 RAPGEF2 chr4:160262716 3'AG 160262716 Downstream 46bp 7249 chr8 37654983 37654983 1 + T G PRAD 37654984 + 37654964 37655004 41 GGCCCGGCTCGGCGGAGGGTGGTGTGCAGCGGCGGGGACCT GGCCCGGCTCGGCGGAGGGGGGTGTGCAGCGGCGGGGACCT < 41bp 0.819167351388708 0.523671972062357 NA NA prediction 0.590990758652702 Functional Loss - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37654984 chr8:37654983 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_7450 0 0 0 0 1 ADGRA2 chr8:37655052 5'GT 37655052 Upstream 70bp 7250 chr6 167721306 167721306 1 + T G SKCM 167721307 + 167721287 167721327 41 TGCATGATTGCCCTACTGCTGTGGAGACCTCGTGCTGACCA TGCATGATTGCCCTACTGCGGTGGAGACCTCGTGCTGACCA < 41bp 0.813735231459523 0.518246844739684 NA NA prediction 0.590976773439678 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167721307 chr6:167721306 nonsynonymous SNV 0.583 1 20 hm7G_associated_SNPs_7451 0 0 0 0 2 UNC93A chr6:167721267 3'AG 167721267 Downstream 40bp 7251 chr6 167721306 167721306 1 + T G SKCM 167721307 + 167721287 167721327 41 TGCATGATTGCCCTACTGCTGTGGAGACCTCGTGCTGACCA TGCATGATTGCCCTACTGCGGTGGAGACCTCGTGCTGACCA < 41bp 0.813735231459523 0.518246844739684 NA NA prediction 0.590976773439678 Functional Loss - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167721307 chr6:167721306 nonsynonymous SNV 0.583 1 20 hm7G_associated_SNPs_7451 0 0 0 0 2 UNC93A chr6:167721398 5'GT 167721398 Upstream 93bp 7252 chr19 40197838 40197838 1 + T G COAD 40197839 + 40197819 40197859 41 AAGGACCCACAGCTGGAGGTGAATTTCTACACTGGGATGGA AAGGACCCACAGCTGGAGGGGAATTTCTACACTGGGATGGA < 41bp 0.795482961396271 0.485570388409909 NA NA prediction 0.590965922792542 Functional Loss - LGALS14 ENSG00000006659 CDS Human protein_coding chr19:40197839 chr19:40197838 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_7452 0 0 0 0 1 LGALS14 chr19:40197818 3'AG 40197818 Downstream 21bp 7253 chr1 11589684 11589684 1 + T G LIHC 11589685 + 11589665 11589705 41 ATGGCACCCCCTGGCTGCCTGCTTAGCTCCAGCCCCGATGG ATGGCACCCCCTGGCTGCCGGCTTAGCTCCAGCCCCGATGG < 41bp 0.795393502875403 0.467346331583542 NA NA prediction 0.590787005750807 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589685 chr1:11589684 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_7453 0 0 0 0 2 DISP3 chr1:11589613 3'AG 11589613 Downstream 72bp 7254 chr1 11589684 11589684 1 + T G LIHC 11589685 + 11589665 11589705 41 ATGGCACCCCCTGGCTGCCTGCTTAGCTCCAGCCCCGATGG ATGGCACCCCCTGGCTGCCGGCTTAGCTCCAGCCCCGATGG < 41bp 0.795393502875403 0.467346331583542 NA NA prediction 0.590787005750807 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589685 chr1:11589684 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_7453 0 0 0 0 2 DISP3 chr1:11589743 5'GT 11589743 Upstream 60bp 7255 chr1 171300894 171300894 1 + T G STAD 171300895 + 171300875 171300915 41 ACACTGGAGGAGACATTGCTGTGGAACTCAGTCGAACGGCA ACACTGGAGGAGACATTGCGGTGGAACTCAGTCGAACGGCA < 41bp 0.809842356365234 0.514530651042057 NA NA prediction 0.590623410646354 Functional Loss - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300895 chr1:171300894 synonymous SNV . 0 20 hm7G_associated_SNPs_7454 0 0 0 0 1 FMO4 chr1:171300921 5'GT 171300921 Upstream 28bp 7256 chr4 25664203 25664203 1 + T G HNSC 25664204 + 25664184 25664224 41 CCGCAGGTCAGCAGCCCACTGCCCCTGATAAAAGCAAAGAG CCGCAGGTCAGCAGCCCACGGCCCCTGATAAAAGCAAAGAG < 41bp 0.795215609317582 0.469798026936457 NA NA prediction 0.590431218635163 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25664204 chr4:25664203 synonymous SNV . 0 20 hm7G_associated_SNPs_7455 0 0 0 0 2 SLC34A2 chr4:25664120 3'AG 25664120 Downstream 84bp 7257 chr4 25664203 25664203 1 + T G HNSC 25664204 + 25664184 25664224 41 CCGCAGGTCAGCAGCCCACTGCCCCTGATAAAAGCAAAGAG CCGCAGGTCAGCAGCCCACGGCCCCTGATAAAAGCAAAGAG < 41bp 0.795215609317582 0.469798026936457 NA NA prediction 0.590431218635163 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25664204 chr4:25664203 synonymous SNV . 0 20 hm7G_associated_SNPs_7455 0 0 0 0 2 SLC34A2 chr4:25664234 5'GT 25664234 Upstream 32bp 7258 chr4 71066250 71066250 1 + T G OV 71066251 + 71066231 71066271 41 AGTTTACATGGTCCTACCCTGGGAACAACCTCAGCAAACAG AGTTTACATGGTCCTACCCGGGGAACAACCTCAGCAAACAG < 41bp 0.8136862487604 0.518480611339252 NA NA prediction 0.590411274842298 Functional Loss - ODAM ENSG00000109205 CDS Human protein_coding chr4:71066251 chr4:71066250 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_7456 0 0 1 0 2 ODAM chr4:71066214 3'AG 71066214 Downstream 37bp 7259 chr4 71066250 71066250 1 + T G OV 71066251 + 71066231 71066271 41 AGTTTACATGGTCCTACCCTGGGAACAACCTCAGCAAACAG AGTTTACATGGTCCTACCCGGGGAACAACCTCAGCAAACAG < 41bp 0.8136862487604 0.518480611339252 NA NA prediction 0.590411274842298 Functional Loss - ODAM ENSG00000109205 CDS Human protein_coding chr4:71066251 chr4:71066250 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_7456 0 0 1 0 2 ODAM chr4:71066318 5'GT 71066318 Upstream 69bp 7260 chr2 9628439 9628439 1 + T G LIHC 9628440 + 9628420 9628460 41 AAACCTGAATTAAGTCTGCTGGGAGATGGAGACCATTAGCC AAACCTGAATTAAGTCTGCGGGGAGATGGAGACCATTAGCC < 41bp 0.795165397554314 0.479544514735973 NA NA prediction 0.590330795108628 Functional Loss - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9628440 chr2:9628439 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_7457 0 0 1 1 1 IAH1 chr2:9628521 5'GT 9628521 Upstream 83bp 7261 chr1 31898625 31898625 1 + T G UCEC 31898626 + 31898606 31898646 41 CCCCTCTCCCCACCCAGTCTGGTTCTACTTCGGCGTCGTGG CCCCTCTCCCCACCCAGTCGGGTTCTACTTCGGCGTCGTGG < 41bp 0.838712820162354 0.543619222476004 NA NA prediction 0.590187195372699 Functional Loss - SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31898626 chr1:31898625 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7458 0 0 1 0 1 SERINC2 chr1:31898623 3'AG 31898623 Downstream 3bp 7262 chr2 201523899 201523899 1 + T G SKCM 201523900 + 201523880 201523920 41 AAATTCAGGTGGTCAGCCGTGAATTAAGAATGCCAATGTCG AAATTCAGGTGGTCAGCCGGGAATTAAGAATGCCAATGTCG < 41bp 0.794936977398779 0.483244637319513 NA NA prediction 0.589873954797558 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201523900 chr2:201523899 synonymous SNV . 0 20 hm7G_associated_SNPs_7462 0 0 0 0 1 AOX1 chr2:201523888 3'AG 201523888 Downstream 12bp 7263 chr12 72388308 72388308 1 + T G LUAD 72388309 + 72388289 72388329 41 GAAATAGGTCTGGCGTCTCTGGGAGCATCAGATGAAGATGT GAAATAGGTCTGGCGTCTCGGGGAGCATCAGATGAAGATGT < 41bp 0.7948238618788 0.493363019020256 NA NA prediction 0.5896477237576 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72388309 chr12:72388308 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_7464 0 0 0 0 2 TPH2 chr12:72388219 3'AG 72388219 Downstream 90bp 7264 chr12 72388308 72388308 1 + T G LUAD 72388309 + 72388289 72388329 41 GAAATAGGTCTGGCGTCTCTGGGAGCATCAGATGAAGATGT GAAATAGGTCTGGCGTCTCGGGGAGCATCAGATGAAGATGT < 41bp 0.7948238618788 0.493363019020256 NA NA prediction 0.5896477237576 Functional Loss - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72388309 chr12:72388308 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_7464 0 0 0 0 2 TPH2 chr12:72388345 5'GT 72388345 Upstream 38bp 7265 chr11 134162084 134162084 1 + T G SKCM 134162085 + 134162065 134162105 41 TCTGATGGTGAGAAACATGTGCTGAGTGGCCACACCAAAGG TCTGATGGTGAGAAACATGGGCTGAGTGGCCACACCAAAGG < 41bp 0.835683252241893 0.540965055283849 NA NA prediction 0.589436393916088 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134162085 chr11:134162084 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_7467 0 0 0 0 2 GLB1L3 chr11:134162026 3'AG 134162026 Downstream 59bp 7266 chr11 134162084 134162084 1 + T G SKCM 134162085 + 134162065 134162105 41 TCTGATGGTGAGAAACATGTGCTGAGTGGCCACACCAAAGG TCTGATGGTGAGAAACATGGGCTGAGTGGCCACACCAAAGG < 41bp 0.835683252241893 0.540965055283849 NA NA prediction 0.589436393916088 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134162085 chr11:134162084 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_7467 0 0 0 0 2 GLB1L3 chr11:134162107 5'GT 134162107 Upstream 24bp 7267 chr14 24770870 24770870 1 + T G LUSC 24770871 + 24770851 24770891 41 CAGCTGATTTTGAAGTCCCTGAAACCTTTTTGAATCGCCTT CAGCTGATTTTGAAGTCCCGGAAACCTTTTTGAATCGCCTT < 41bp 0.794519271982273 0.468950961572436 NA NA prediction 0.589038543964547 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24770871 chr14:24770870 synonymous SNV . 0 20 hm7G_associated_SNPs_7468 0 0 1 0 2 NOP9 chr14:24770818 3'AG 24770818 Downstream 53bp 7268 chr14 24770870 24770870 1 + T G LUSC 24770871 + 24770851 24770891 41 CAGCTGATTTTGAAGTCCCTGAAACCTTTTTGAATCGCCTT CAGCTGATTTTGAAGTCCCGGAAACCTTTTTGAATCGCCTT < 41bp 0.794519271982273 0.468950961572436 NA NA prediction 0.589038543964547 Functional Loss - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24770871 chr14:24770870 synonymous SNV . 0 20 hm7G_associated_SNPs_7468 0 0 1 0 2 NOP9 chr14:24770928 5'GT 24770928 Upstream 59bp 7269 chr22 50655246 50655246 1 + T G LIHC 50655247 + 50655227 50655267 41 CTCGGCTGGAGCAGCTGAGTGCGGCAGAGCTGCAGAGCAGG CTCGGCTGGAGCAGCTGAGGGCGGCAGAGCTGCAGAGCAGG < 41bp 0.841186185901507 0.546719727385009 NA NA prediction 0.588932917032996 Functional Loss - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50655247 chr22:50655246 unknown 0.040 0 20 hm7G_associated_SNPs_7469 0 0 1 0 1 SELENOO chr22:50655305 5'GT 50655305 Upstream 60bp 7270 chr1 196658705 196658705 1 + T G UCEC 196658706 + 196658686 196658726 41 TTACTGGGATCACATTCATTGCACACAAGATGGATGGTCGC TTACTGGGATCACATTCATGGCACACAAGATGGATGGTCGC < 41bp 0.827944103214106 0.53353557855815 NA NA prediction 0.58881704931191 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196658706 chr1:196658705 nonsynonymous SNV 0.012 4 20 hm7G_associated_SNPs_7470 0 0 1 0 2 CFH chr1:196658625 3'AG 196658625 Downstream 81bp 7271 chr1 196658705 196658705 1 + T G UCEC 196658706 + 196658686 196658726 41 TTACTGGGATCACATTCATTGCACACAAGATGGATGGTCGC TTACTGGGATCACATTCATGGCACACAAGATGGATGGTCGC < 41bp 0.827944103214106 0.53353557855815 NA NA prediction 0.58881704931191 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196658706 chr1:196658705 nonsynonymous SNV 0.012 4 20 hm7G_associated_SNPs_7470 0 0 1 0 2 CFH chr1:196658744 5'GT 196658744 Upstream 40bp 7272 chr5 161302627 161302627 1 + T G MESO 161302628 + 161302608 161302648 41 CCCTATGGATGCCCATGCTTGCCCACTAAAATTTGGAAGTT CCCTATGGATGCCCATGCTGGCCCACTAAAATTTGGAAGTT < 41bp 0.794384115178 0.484123467403104 NA NA prediction 0.588768230355999 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161302628 chr5:161302627 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7471 0 0 0 0 2 GABRA1 chr5:161302566 3'AG 161302566 Downstream 62bp 7273 chr5 161302627 161302627 1 + T G MESO 161302628 + 161302608 161302648 41 CCCTATGGATGCCCATGCTTGCCCACTAAAATTTGGAAGTT CCCTATGGATGCCCATGCTGGCCCACTAAAATTTGGAAGTT < 41bp 0.794384115178 0.484123467403104 NA NA prediction 0.588768230355999 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161302628 chr5:161302627 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7471 0 0 0 0 2 GABRA1 chr5:161302648 5'GT 161302648 Upstream 22bp 7274 chr3 40464421 40464421 1 + T G UCEC 40464422 + 40464402 40464442 41 TCACCATGGGCCATGTATTTGATAGCCTGTGCACTGTGGAC TCACCATGGGCCATGTATTGGATAGCCTGTGCACTGTGGAC < 41bp 0.834870787630181 0.540518705487019 NA NA prediction 0.588704164286325 Functional Loss - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40464422 chr3:40464421 nonsynonymous SNV 0.763 3 20 hm7G_associated_SNPs_7472 0 0 0 0 1 ENTPD3 chr3:40464341 3'AG 40464341 Downstream 81bp 7275 chr17 12832339 12832339 1 + T G SKCM 12832340 + 12832320 12832360 41 GGGAAGAAATGGAAGAGGCTGCCAACAGAGTGGAGATTTGC GGGAAGAAATGGAAGAGGCGGCCAACAGAGTGGAGATTTGC < 41bp 0.794336261850014 0.473563749389173 NA NA prediction 0.588672523700027 Functional Loss - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12832340 chr17:12832339 synonymous SNV . 0 20 hm7G_associated_SNPs_7474 0 0 0 0 1 ARHGAP44 chr17:12832246 3'AG 12832246 Downstream 94bp 7276 chr1 44415814 44415814 1 + T G UCEC 44415815 + 44415795 44415835 41 TGAATGCCATCTCACAGCCTGATGCCCAGAGGTGAGCTAGT TGAATGCCATCTCACAGCCGGATGCCCAGAGGTGAGCTAGT < 41bp 0.814575616566058 0.520395147206483 NA NA prediction 0.588360938719151 Functional Loss - IPO13 ENSG00000117408 CDS Human protein_coding chr1:44415815 chr1:44415814 synonymous SNV . 0 20 hm7G_associated_SNPs_7475 0 0 0 0 1 IPO13 chr1:44415825 5'GT 44415825 Upstream 12bp 7277 chr11 3845159 3845159 1 + T G rs551147697 3845160 + 3845140 3845180 41 TCAGCCATCGGCGGGGAGGTGCCCCAGCGCTACGTGTGGCG TCAGCCATCGGCGGGGAGGGGCCCCAGCGCTACGTGTGGCG < 41bp 0.800641629108734 0.506466571648262 NA NA prediction 0.588350114920943 Functional Loss - PGAP2 ENSG00000148985 CDS Human protein_coding chr11:3845160 chr11:3845159 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_7477 0 0 1 0 1 PGAP2 chr11:3845113 3'AG 3845113 Downstream 47bp 7278 chr5 112868665 112868665 1 + T G SKCM 112868666 + 112868646 112868686 41 GACGATTGGCAGCTATCGCTGTGGCTGAAAGAGTTGCCGCA GACGATTGGCAGCTATCGCGGTGGCTGAAAGAGTTGCCGCA < 41bp 0.811888136503883 0.517742801890336 NA NA prediction 0.588290669227096 Functional Loss - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868666 chr5:112868665 synonymous SNV . 0 20 hm7G_associated_SNPs_7478 0 0 1 0 2 YTHDC2 chr5:112868576 3'AG 112868576 Downstream 90bp 7279 chr5 112868665 112868665 1 + T G SKCM 112868666 + 112868646 112868686 41 GACGATTGGCAGCTATCGCTGTGGCTGAAAGAGTTGCCGCA GACGATTGGCAGCTATCGCGGTGGCTGAAAGAGTTGCCGCA < 41bp 0.811888136503883 0.517742801890336 NA NA prediction 0.588290669227096 Functional Loss - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112868666 chr5:112868665 synonymous SNV . 0 20 hm7G_associated_SNPs_7478 0 0 1 0 2 YTHDC2 chr5:112868742 5'GT 112868742 Upstream 78bp 7280 chr11 124743272 124743272 1 + T G LUAD 124743273 + 124743253 124743293 41 GGAAGCCACATGGAGCGGCTGGCTTAAGATGCGGGGTGAGT GGAAGCCACATGGAGCGGCGGGCTTAAGATGCGGGGTGAGT < 41bp 0.83976469927809 0.545711581349634 NA NA prediction 0.588106235856914 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743273 chr11:124743272 nonsynonymous SNV 0.043 1 20 hm7G_associated_SNPs_7481 0 0 0 0 2 ROBO3 chr11:124743206 3'AG 124743206 Downstream 67bp 7281 chr11 124743272 124743272 1 + T G LUAD 124743273 + 124743253 124743293 41 GGAAGCCACATGGAGCGGCTGGCTTAAGATGCGGGGTGAGT GGAAGCCACATGGAGCGGCGGGCTTAAGATGCGGGGTGAGT < 41bp 0.83976469927809 0.545711581349634 NA NA prediction 0.588106235856914 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743273 chr11:124743272 nonsynonymous SNV 0.043 1 20 hm7G_associated_SNPs_7481 0 0 0 0 2 ROBO3 chr11:124743287 5'GT 124743287 Upstream 16bp 7282 chr11 64337144 64337144 1 + T G KIRC 64337145 + 64337125 64337165 41 ATGACAGCAGATGGCATTCTGCATACAGTGGGCCGGCTGGG ATGACAGCAGATGGCATTCGGCATACAGTGGGCCGGCTGGG < 41bp 0.794044748019668 0.493775279556466 NA NA prediction 0.588089496039337 Functional Loss - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64337145 chr11:64337144 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_7482 0 0 0 0 1 SLC22A11 chr11:64337124 3'AG 64337124 Downstream 21bp 7283 chr12 25260847 25260847 1 + T G LUAD 25260848 + 25260828 25260868 41 TTGCATTCATTGTACTGTTTGCAGCTTTGATGAGCTTCCTC TTGCATTCATTGTACTGTTGGCAGCTTTGATGAGCTTCCTC < 41bp 0.803388690406635 0.509369426481279 NA NA prediction 0.58803852785071 Functional Loss - LRMP ENSG00000118308 CDS Human protein_coding chr12:25260848 chr12:25260847 nonsynonymous SNV 0.256 0 20 hm7G_associated_SNPs_7483 0 0 0 10 1 LRMP chr12:25260751 3'AG 25260751 Downstream 97bp 7284 chr1 236912483 236912483 1 + T G UCEC 236912484 + 236912464 236912504 41 TGGAGTTTGCCAAGAGGGCTGCTCCTTTCAACAATTGGATG TGGAGTTTGCCAAGAGGGCGGCTCCTTTCAACAATTGGATG < 41bp 0.83598043158454 0.541962352815659 NA NA prediction 0.588036157537763 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236912484 chr1:236912483 synonymous SNV . 0 20 hm7G_associated_SNPs_7484 0 0 1 0 2 ACTN2 chr1:236912424 3'AG 236912424 Downstream 60bp 7285 chr1 236912483 236912483 1 + T G UCEC 236912484 + 236912464 236912504 41 TGGAGTTTGCCAAGAGGGCTGCTCCTTTCAACAATTGGATG TGGAGTTTGCCAAGAGGGCGGCTCCTTTCAACAATTGGATG < 41bp 0.83598043158454 0.541962352815659 NA NA prediction 0.588036157537763 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236912484 chr1:236912483 synonymous SNV . 0 20 hm7G_associated_SNPs_7484 0 0 1 0 2 ACTN2 chr1:236912564 5'GT 236912564 Upstream 82bp 7286 chr3 190282125 190282125 1 + T G SKCM 190282126 + 190282106 190282146 41 CTCTACTTTTATGGAATCCTGCAAAGTGATGCCTCAGGTAA CTCTACTTTTATGGAATCCGGCAAAGTGATGCCTCAGGTAA < 41bp 0.793972564281312 0.497836907201183 NA NA prediction 0.587945128562625 Functional Loss - IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190282126 chr3:190282125 nonsynonymous SNV 0.978 0 20 hm7G_associated_SNPs_7485 0 0 1 0 2 IL1RAP chr3:190282078 3'AG 190282078 Downstream 48bp 7287 chr3 190282125 190282125 1 + T G SKCM 190282126 + 190282106 190282146 41 CTCTACTTTTATGGAATCCTGCAAAGTGATGCCTCAGGTAA CTCTACTTTTATGGAATCCGGCAAAGTGATGCCTCAGGTAA < 41bp 0.793972564281312 0.497836907201183 NA NA prediction 0.587945128562625 Functional Loss - IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190282126 chr3:190282125 nonsynonymous SNV 0.978 0 20 hm7G_associated_SNPs_7485 0 0 1 0 2 IL1RAP chr3:190282142 5'GT 190282142 Upstream 18bp 7288 chr14 51348331 51348331 1 + T G DLBC 51348332 + 51348312 51348352 41 AGGGCAGCTTCGCACAGACTGAAGCTGGTAAAGGTATGTCT AGGGCAGCTTCGCACAGACGGAAGCTGGTAAAGGTATGTCT < 41bp 0.803631203925546 0.509893958902913 NA NA prediction 0.587474490045266 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51348332 chr14:51348331 nonsynonymous SNV 0.038 1 20 hm7G_associated_SNPs_7489 0 0 0 1 2 ABHD12B chr14:51348314 3'AG 51348314 Downstream 18bp 7289 chr14 51348331 51348331 1 + T G DLBC 51348332 + 51348312 51348352 41 AGGGCAGCTTCGCACAGACTGAAGCTGGTAAAGGTATGTCT AGGGCAGCTTCGCACAGACGGAAGCTGGTAAAGGTATGTCT < 41bp 0.803631203925546 0.509893958902913 NA NA prediction 0.587474490045266 Functional Loss - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51348332 chr14:51348331 nonsynonymous SNV 0.038 1 20 hm7G_associated_SNPs_7489 0 0 0 1 2 ABHD12B chr14:51348344 5'GT 51348344 Upstream 14bp 7290 chr9 12695606 12695606 1 + T G UCEC 12695607 + 12695587 12695627 41 GCACAACTCACCCTTTATTTGTCATTGCCACCAGGAGATCA GCACAACTCACCCTTTATTGGTCATTGCCACCAGGAGATCA < 41bp 0.793710187821011 0.4884800738844 NA NA prediction 0.587420375642022 Functional Loss - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12695607 chr9:12695606 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_7490 0 0 0 0 1 TYRP1 chr9:12695515 3'AG 12695515 Downstream 92bp 7291 chr11 582053 582053 1 + T G COAD 582054 + 582034 582074 41 GAGAAGACGAGGGGGCGTCTGAGGAGGAAGACCTGGAAGAC GAGAAGACGAGGGGGCGTCGGAGGAGGAAGACCTGGAAGAC < 41bp 0.832347513526942 0.538725893306359 NA NA prediction 0.587243240441166 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:582054 chr11:582053 synonymous SNV . 0 20 hm7G_associated_SNPs_7492 0 0 1 0 3 PHRF1 chr11:581962 3'AG 581962 Downstream 92bp 7292 chr11 582053 582053 1 + T G COAD 582054 + 582034 582074 41 GAGAAGACGAGGGGGCGTCTGAGGAGGAAGACCTGGAAGAC GAGAAGACGAGGGGGCGTCGGAGGAGGAAGACCTGGAAGAC < 41bp 0.832347513526942 0.538725893306359 NA NA prediction 0.587243240441166 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:582054 chr11:582053 synonymous SNV . 0 20 hm7G_associated_SNPs_7492 0 0 1 0 3 PHRF1 chr11:581965 3'AG 581965 Downstream 89bp 7293 chr11 582053 582053 1 + T G COAD 582054 + 582034 582074 41 GAGAAGACGAGGGGGCGTCTGAGGAGGAAGACCTGGAAGAC GAGAAGACGAGGGGGCGTCGGAGGAGGAAGACCTGGAAGAC < 41bp 0.832347513526942 0.538725893306359 NA NA prediction 0.587243240441166 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:582054 chr11:582053 synonymous SNV . 0 20 hm7G_associated_SNPs_7492 0 0 1 0 3 PHRF1 chr11:582081 5'GT 582081 Upstream 29bp 7294 chrX 69671762 69671762 1 + T G HNSC 69671763 + 69671743 69671783 41 ATAAGCCATAATTCCAGCCTGGGTTATCTCGGGGCTGTGGA ATAAGCCATAATTCCAGCCGGGGTTATCTCGGGGCTGTGGA < 41bp 0.844705921948461 0.551096085547704 NA NA prediction 0.587219672801514 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69671763 chrX:69671762 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7493 0 0 0 0 1 DLG3 chrX:69671717 3'AG 69671717 Downstream 46bp 7295 chr10 70741304 70741304 1 + T G UCEC 70741305 + 70741285 70741325 41 ATTTCTAGGGTGTTTGCTTTGATGTACCTACCGCATCAGTA ATTTCTAGGGTGTTTGCTTGGATGTACCTACCGCATCAGTA < 41bp 0.813422753890611 0.519834753389266 NA NA prediction 0.587176001002689 Functional Loss - DDX21 ENSG00000165732 CDS Human protein_coding chr10:70741305 chr10:70741304 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_7494 0 0 1 0 1 DDX21 chr10:70741337 5'GT 70741337 Upstream 34bp 7296 chr13 78320735 78320735 1 + T G SKCM 78320736 + 78320716 78320756 41 TTCAGGAAAAAAAGGGACATGTAGTGATCAAGAATATGACC TTCAGGAAAAAAAGGGACAGGTAGTGATCAAGAATATGACC < 41bp 0.793460905172769 0.486264844763215 NA NA prediction 0.586921810345537 Functional Loss - SLAIN1 ENSG00000139737 CDS Human protein_coding chr13:78320736 chr13:78320735 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_7495 0 0 1 0 1 SLAIN1 chr13:78320649 3'AG 78320649 Downstream 87bp 7297 chr5 61802105 61802105 1 + T G LUSC 61802106 + 61802086 61802126 41 ACACTACTTTTTCAGTTACTGCAGCAAGTTACAGAATGTGA ACACTACTTTTTCAGTTACGGCAGCAAGTTACAGAATGTGA < 41bp 0.793443034490959 0.497304451458316 NA NA prediction 0.586886068981919 Functional Loss - IPO11 ENSG00000086200 CDS Human protein_coding chr5:61802106 chr5:61802105 nonsynonymous SNV 0.932 4 20 hm7G_associated_SNPs_7496 0 0 1 0 2 IPO11 chr5:61802068 3'AG 61802068 Downstream 38bp 7298 chr5 61802105 61802105 1 + T G LUSC 61802106 + 61802086 61802126 41 ACACTACTTTTTCAGTTACTGCAGCAAGTTACAGAATGTGA ACACTACTTTTTCAGTTACGGCAGCAAGTTACAGAATGTGA < 41bp 0.793443034490959 0.497304451458316 NA NA prediction 0.586886068981919 Functional Loss - IPO11 ENSG00000086200 CDS Human protein_coding chr5:61802106 chr5:61802105 nonsynonymous SNV 0.932 4 20 hm7G_associated_SNPs_7496 0 0 1 0 2 IPO11 chr5:61802184 5'GT 61802184 Upstream 80bp 7299 chr19 39961076 39961076 1 + T G OV 39961077 + 39961057 39961097 41 CAGCATCAGGTGTGGATGTTGGGGGCCAGCATGAATGGGGC CAGCATCAGGTGTGGATGTGGGGGGCCAGCATGAATGGGGC < 41bp 0.79337839426867 0.464451559092899 NA NA prediction 0.58675678853734 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39961077 chr19:39961076 synonymous SNV . 0 20 hm7G_associated_SNPs_7498 0 0 1 0 2 SUPT5H chr19:39961017 3'AG 39961017 Downstream 60bp 7300 chr19 39961076 39961076 1 + T G OV 39961077 + 39961057 39961097 41 CAGCATCAGGTGTGGATGTTGGGGGCCAGCATGAATGGGGC CAGCATCAGGTGTGGATGTGGGGGGCCAGCATGAATGGGGC < 41bp 0.79337839426867 0.464451559092899 NA NA prediction 0.58675678853734 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39961077 chr19:39961076 synonymous SNV . 0 20 hm7G_associated_SNPs_7498 0 0 1 0 2 SUPT5H chr19:39961163 5'GT 39961163 Upstream 88bp 7301 chr2 232135735 232135735 1 + T G LIHC 232135736 + 232135716 232135756 41 CACTCCACGAGCGACGTGGTGCGGCAGTACATGGCCAGGCT CACTCCACGAGCGACGTGGGGCGGCAGTACATGGCCAGGCT < 41bp 0.842394168576102 0.549103175005205 NA NA prediction 0.586581987141795 Functional Loss - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232135736 chr2:232135735 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_7499 0 0 1 0 2 ARMC9 chr2:232135695 3'AG 232135695 Downstream 41bp 7302 chr2 232135735 232135735 1 + T G LIHC 232135736 + 232135716 232135756 41 CACTCCACGAGCGACGTGGTGCGGCAGTACATGGCCAGGCT CACTCCACGAGCGACGTGGGGCGGCAGTACATGGCCAGGCT < 41bp 0.842394168576102 0.549103175005205 NA NA prediction 0.586581987141795 Functional Loss - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232135736 chr2:232135735 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_7499 0 0 1 0 2 ARMC9 chr2:232135785 5'GT 232135785 Upstream 51bp 7303 chr6 118588213 118588213 1 + T G UCEC 118588214 + 118588194 118588234 41 CTCTCCTGGTTCTTCCTGCTGATCCGGTACAAGGCTGTGCA CTCTCCTGGTTCTTCCTGCGGATCCGGTACAAGGCTGTGCA < 41bp 0.805105814257797 0.51188504037534 NA NA prediction 0.586441547764914 Functional Loss - SLC35F1 ENSG00000196376 CDS Human protein_coding chr6:118588214 chr6:118588213 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7502 0 0 1 0 1 SLC35F1 chr6:118588158 3'AG 118588158 Downstream 56bp 7304 chr11 94328518 94328518 1 + T G COAD 94328519 + 94328499 94328539 41 ATTTCCAGCTGATGAAGGCTGTGGCTGAAAAGACACGTCTC ATTTCCAGCTGATGAAGGCGGTGGCTGAAAAGACACGTCTC < 41bp 0.793074524979698 0.485186489339623 NA NA prediction 0.586149049959396 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94328519 chr11:94328518 synonymous SNV . 0 20 hm7G_associated_SNPs_7504 0 0 0 1 2 PIWIL4 chr11:94328475 3'AG 94328475 Downstream 44bp 7305 chr11 94328518 94328518 1 + T G COAD 94328519 + 94328499 94328539 41 ATTTCCAGCTGATGAAGGCTGTGGCTGAAAAGACACGTCTC ATTTCCAGCTGATGAAGGCGGTGGCTGAAAAGACACGTCTC < 41bp 0.793074524979698 0.485186489339623 NA NA prediction 0.586149049959396 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94328519 chr11:94328518 synonymous SNV . 0 20 hm7G_associated_SNPs_7504 0 0 0 1 2 PIWIL4 chr11:94328592 5'GT 94328592 Upstream 75bp 7306 chr8 99042706 99042706 1 + T G LUSC 99042707 + 99042687 99042727 41 TAGGTATCACTATGTATGCTGTTGGGGTAGGAAAAGCCATT TAGGTATCACTATGTATGCGGTTGGGGTAGGAAAAGCCATT < 41bp 0.809428536141686 0.516401878911971 NA NA prediction 0.58605331445943 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99042707 chr8:99042706 synonymous SNV . 0 20 hm7G_associated_SNPs_7505 0 0 0 0 1 MATN2 chr8:99042690 3'AG 99042690 Downstream 17bp 7307 chr18 60384439 60384439 1 + T G SKCM 60384440 + 60384420 60384460 41 TTTGGGGAGCTGTGGAGGGTGCAGGAGGAAGGCATGGACTC TTTGGGGAGCTGTGGAGGGGGCAGGAGGAAGGCATGGACTC < 41bp 0.79295551870539 0.482692680793584 NA NA prediction 0.585911037410781 Functional Loss - PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60384440 chr18:60384439 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7506 0 0 1 0 1 PHLPP1 chr18:60384492 5'GT 60384492 Upstream 54bp 7308 chr15 80460487 80460487 1 + T G LUAD 80460488 + 80460468 80460508 41 TGGGACAGATGAAACCTGATGACTGTGAGTGACCGCAGCGT TGGGACAGATGAAACCTGAGGACTGTGAGTGACCGCAGCGT < 41bp 0.838240595991128 0.545326621843918 NA NA prediction 0.585827948294421 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80460488 chr15:80460487 nonsynonymous SNV 0.802 2 20 hm7G_associated_SNPs_7508 0 0 1 0 2 FAH chr15:80460394 3'AG 80460394 Downstream 94bp 7309 chr15 80460487 80460487 1 + T G LUAD 80460488 + 80460468 80460508 41 TGGGACAGATGAAACCTGATGACTGTGAGTGACCGCAGCGT TGGGACAGATGAAACCTGAGGACTGTGAGTGACCGCAGCGT < 41bp 0.838240595991128 0.545326621843918 NA NA prediction 0.585827948294421 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80460488 chr15:80460487 nonsynonymous SNV 0.802 2 20 hm7G_associated_SNPs_7508 0 0 1 0 2 FAH chr15:80460491 5'GT 80460491 Upstream 5bp 7310 chr19 39760216 39760216 1 + T G ESCA 39760217 + 39760197 39760237 41 GACACTGACCCAGCCCTGGTGGACGTCTTGGACCAGCCCCT GACACTGACCCAGCCCTGGGGGACGTCTTGGACCAGCCCCT < 41bp 0.792880182245201 0.464312866397513 NA NA prediction 0.585760364490403 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760217 chr19:39760216 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_7509 0 0 0 0 2 IFNL2 chr19:39760128 3'AG 39760128 Downstream 89bp 7311 chr19 39760216 39760216 1 + T G ESCA 39760217 + 39760197 39760237 41 GACACTGACCCAGCCCTGGTGGACGTCTTGGACCAGCCCCT GACACTGACCCAGCCCTGGGGGACGTCTTGGACCAGCCCCT < 41bp 0.792880182245201 0.464312866397513 NA NA prediction 0.585760364490403 Functional Loss - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760217 chr19:39760216 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_7509 0 0 0 0 2 IFNL2 chr19:39760277 5'GT 39760277 Upstream 62bp 7312 chr5 38463935 38463935 1 + T G UCEC 38463936 + 38463916 38463956 41 CCTCTTGCTTCCTGGCAGGTGGAATGAAGGAAATTGCTCTG CCTCTTGCTTCCTGGCAGGGGGAATGAAGGAAATTGCTCTG < 41bp 0.79731280176663 0.504447532261449 NA NA prediction 0.58573053901036 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38463936 chr5:38463935 synonymous SNV . 0 20 hm7G_associated_SNPs_7510 0 0 0 0 1 EGFLAM chr5:38463934 3'AG 38463934 Downstream 2bp 7313 chr17 30692352 30692352 1 + T G GBM 30692353 + 30692333 30692373 41 CATTTCTTCTCTGCAGGTATGCCCCCACCTGTTCCACGTCC CATTTCTTCTCTGCAGGTAGGCCCCCACCTGTTCCACGTCC < 41bp 0.792833263155605 0.484459178082514 NA NA prediction 0.58566652631121 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30692353 chr17:30692352 nonsynonymous SNV 0.976 2 20 hm7G_associated_SNPs_7512 0 0 1 0 1 ZNF207 chr17:30692349 3'AG 30692349 Downstream 4bp 7314 chr8 11683616 11683616 1 + T G LUSC 11683617 + 11683597 11683637 41 TTGAAGACCCCTTAGTTGGTGAAGATACAGAACGTGCCAAC TTGAAGACCCCTTAGTTGGGGAAGATACAGAACGTGCCAAC < 41bp 0.817033706364086 0.524369099409205 NA NA prediction 0.585329213909763 Functional Loss - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11683617 chr8:11683616 synonymous SNV . 0 20 hm7G_associated_SNPs_7514 0 0 1 2 2 FDFT1 chr8:11683533 3'AG 11683533 Downstream 84bp 7315 chr8 11683616 11683616 1 + T G LUSC 11683617 + 11683597 11683637 41 TTGAAGACCCCTTAGTTGGTGAAGATACAGAACGTGCCAAC TTGAAGACCCCTTAGTTGGGGAAGATACAGAACGTGCCAAC < 41bp 0.817033706364086 0.524369099409205 NA NA prediction 0.585329213909763 Functional Loss - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11683617 chr8:11683616 synonymous SNV . 0 20 hm7G_associated_SNPs_7514 0 0 1 2 2 FDFT1 chr8:11683588 3'AG 11683588 Downstream 29bp 7316 chrX 138642950 138642950 1 + T G UCS 138642951 + 138642931 138642971 41 GTGGAGGCTCTATCGTTAATGAAAAATGGATTGTAACTGCT GTGGAGGCTCTATCGTTAAGGAAAAATGGATTGTAACTGCT < 41bp 0.806567163821237 0.513965236372771 NA NA prediction 0.585203854896932 Functional Loss - F9 ENSG00000101981 CDS Human protein_coding chrX:138642951 chrX:138642950 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_7516 0 0 0 0 2 F9 chrX:138642900 3'AG 138642900 Downstream 51bp 7317 chrX 138642950 138642950 1 + T G UCS 138642951 + 138642931 138642971 41 GTGGAGGCTCTATCGTTAATGAAAAATGGATTGTAACTGCT GTGGAGGCTCTATCGTTAAGGAAAAATGGATTGTAACTGCT < 41bp 0.806567163821237 0.513965236372771 NA NA prediction 0.585203854896932 Functional Loss - F9 ENSG00000101981 CDS Human protein_coding chrX:138642951 chrX:138642950 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_7516 0 0 0 0 2 F9 chrX:138643014 5'GT 138643014 Upstream 65bp 7318 chr8 59488521 59488521 1 + T G rs61732486 59488522 + 59488502 59488542 41 CTGTAACTGGTAATGATGTTGGAATTCGTAGAGCAGAAATT CTGTAACTGGTAATGATGTGGGAATTCGTAGAGCAGAAATT < 41bp 0.821997119375138 0.529505708258333 NA NA prediction 0.58498282223361 Functional Loss - SDCBP ENSG00000137575 CDS Human protein_coding chr8:59488522 chr8:59488521 synonymous SNV . 0 20 hm7G_associated_SNPs_7519 0 0 1 0 3 SDCBP chr8:59488459 3'AG 59488459 Downstream 63bp 7319 chr8 59488521 59488521 1 + T G rs61732486 59488522 + 59488502 59488542 41 CTGTAACTGGTAATGATGTTGGAATTCGTAGAGCAGAAATT CTGTAACTGGTAATGATGTGGGAATTCGTAGAGCAGAAATT < 41bp 0.821997119375138 0.529505708258333 NA NA prediction 0.58498282223361 Functional Loss - SDCBP ENSG00000137575 CDS Human protein_coding chr8:59488522 chr8:59488521 synonymous SNV . 0 20 hm7G_associated_SNPs_7519 0 0 1 0 3 SDCBP chr8:59488462 3'AG 59488462 Downstream 60bp 7320 chr8 59488521 59488521 1 + T G rs61732486 59488522 + 59488502 59488542 41 CTGTAACTGGTAATGATGTTGGAATTCGTAGAGCAGAAATT CTGTAACTGGTAATGATGTGGGAATTCGTAGAGCAGAAATT < 41bp 0.821997119375138 0.529505708258333 NA NA prediction 0.58498282223361 Functional Loss - SDCBP ENSG00000137575 CDS Human protein_coding chr8:59488522 chr8:59488521 synonymous SNV . 0 20 hm7G_associated_SNPs_7519 0 0 1 0 3 SDCBP chr8:59488620 5'GT 59488620 Upstream 100bp 7321 chr7 6624812 6624812 1 + T G SKCM 6624813 + 6624793 6624833 41 TTTCTGGTCCACTTGGTGGTGATGTCAGATTTATACCAGGA TTTCTGGTCCACTTGGTGGGGATGTCAGATTTATACCAGGA < 41bp 0.792484306755279 0.482953521836065 NA NA prediction 0.584968613510557 Functional Loss - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6624813 chr7:6624812 nonsynonymous SNV 0.380 1 20 hm7G_associated_SNPs_7520 0 0 1 0 1 ZDHHC4 chr7:6624891 5'GT 6624891 Upstream 80bp 7322 chr22 23495232 23495232 1 + T G DLBC 23495233 + 23495213 23495253 41 CCCACAGGTTTTGCAAGAATGTTTTTGATCGAGACTACAAG CCCACAGGTTTTGCAAGAAGGTTTTTGATCGAGACTACAAG < 41bp 0.792468906425274 0.475482402926045 NA NA prediction 0.584937812850549 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23495233 chr22:23495232 nonsynonymous SNV 0.969 2 20 hm7G_associated_SNPs_7521 0 0 1 0 2 RAB36 chr22:23495220 3'AG 23495220 Downstream 13bp 7323 chr22 23495232 23495232 1 + T G DLBC 23495233 + 23495213 23495253 41 CCCACAGGTTTTGCAAGAATGTTTTTGATCGAGACTACAAG CCCACAGGTTTTGCAAGAAGGTTTTTGATCGAGACTACAAG < 41bp 0.792468906425274 0.475482402926045 NA NA prediction 0.584937812850549 Functional Loss - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23495233 chr22:23495232 nonsynonymous SNV 0.969 2 20 hm7G_associated_SNPs_7521 0 0 1 0 2 RAB36 chr22:23495321 5'GT 23495321 Upstream 90bp 7324 chr2 201478589 201478589 1 + T G LIHC 201478590 + 201478570 201478610 41 CTGAATGAAGTCTCCCTTTTGGGCTCGGCGCCAGGTGGGAA CTGAATGAAGTCTCCCTTTGGGGCTCGGCGCCAGGTGGGAA < 41bp 0.792393186810847 0.468294302124612 NA NA prediction 0.584786373621694 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201478590 chr2:201478589 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_7523 0 0 0 0 1 AOX1 chr2:201478527 3'AG 201478527 Downstream 63bp 7325 chr11 60152586 60152586 1 + T G LGG 60152587 + 60152567 60152607 41 CAGATCCTGTGTTGCCTGTTGATTTCAAGTCTGGGGGCCAT CAGATCCTGTGTTGCCTGTGGATTTCAAGTCTGGGGGCCAT < 41bp 0.808749475120476 0.516381909505751 NA NA prediction 0.584735131229449 Functional Loss - MS4A7 ENSG00000166927 CDS Human protein_coding chr11:60152587 chr11:60152586 nonsynonymous SNV 0.012 1 20 hm7G_associated_SNPs_7524 0 0 0 0 1 MS4A7 chr11:60152561 3'AG 60152561 Downstream 26bp 7326 chr5 81460256 81460256 1 + T G LUAD 81460257 + 81460237 81460277 41 TGGATGATTGTGAAGTGATTGAAACTGCAGCAGCGTCCGAA TGGATGATTGTGAAGTGATGGAAACTGCAGCAGCGTCCGAA < 41bp 0.79233656050146 0.495940875638853 NA NA prediction 0.58467312100292 Functional Loss - ATG10 ENSG00000152348 CDS Human protein_coding chr5:81460257 chr5:81460256 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_7525 0 0 0 0 1 ATG10 chr5:81460218 3'AG 81460218 Downstream 39bp 7327 chr4 56738061 56738061 1 + T G rs112233016 56738062 + 56738042 56738082 41 AGCAACAGCAGCGATTCAGTGATTTGCGAGAGCTTTTTGCC AGCAACAGCAGCGATTCAGGGATTTGCGAGAGCTTTTTGCC < 41bp 0.83475757841908 0.542560515524383 NA NA prediction 0.584394125789394 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56738062 chr4:56738061 nonsynonymous SNV 0.027 0 20 hm7G_associated_SNPs_7528 0 0 1 0 2 EXOC1 chr4:56738015 3'AG 56738015 Downstream 47bp 7328 chr4 56738061 56738061 1 + T G rs112233016 56738062 + 56738042 56738082 41 AGCAACAGCAGCGATTCAGTGATTTGCGAGAGCTTTTTGCC AGCAACAGCAGCGATTCAGGGATTTGCGAGAGCTTTTTGCC < 41bp 0.83475757841908 0.542560515524383 NA NA prediction 0.584394125789394 Functional Loss - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56738062 chr4:56738061 nonsynonymous SNV 0.027 0 20 hm7G_associated_SNPs_7528 0 0 1 0 2 EXOC1 chr4:56738124 5'GT 56738124 Upstream 64bp 7329 chr7 24681456 24681456 1 + T G BLCA 24681457 + 24681437 24681477 41 GATGAAAATGTGGCAGAATTGGTTGGTATACTCAAAGAACC GATGAAAATGTGGCAGAATGGGTTGGTATACTCAAAGAACC < 41bp 0.817029843401604 0.524843140204125 NA NA prediction 0.58437340639496 Functional Loss - MPP6 ENSG00000105926 CDS Human protein_coding chr7:24681457 chr7:24681456 nonsynonymous SNV 0.915 3 20 hm7G_associated_SNPs_7529 0 0 1 0 1 MPP6 chr7:24681487 5'GT 24681487 Upstream 32bp 7330 chr1 53122519 53122519 1 + T G LUAD 53122520 + 53122500 53122540 41 ACAGGCATGGCGGCAGAAGTGCCAAAAGTGAGCCCTCTCCA ACAGGCATGGCGGCAGAAGGGCCAAAAGTGAGCCCTCTCCA < 41bp 0.792126552204127 0.485299889877856 NA NA prediction 0.584253104408254 Functional Loss - FAM159A ENSG00000182183 CDS Human protein_coding chr1:53122520 chr1:53122519 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_7530 0 0 0 0 1 FAM159A chr1:53122462 3'AG 53122462 Downstream 58bp 7331 chr7 151046195 151046195 1 + T G rs146523163 151046196 + 151046176 151046216 41 CTCTGACAGACTAGAATGCTGTGAAAATGAAGTAGAAAAGG CTCTGACAGACTAGAATGCGGTGAAAATGAAGTAGAAAAGG < 41bp 0.793415015507394 0.501356475155081 NA NA prediction 0.584117080704625 Functional Loss - NUB1 ENSG00000013374 CDS Human protein_coding chr7:151046196 chr7:151046195 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_7532 0 0 1 3 1 NUB1 chr7:151046159 3'AG 151046159 Downstream 37bp 7332 chr13 42788687 42788687 1 + T G STAD 42788688 + 42788668 42788708 41 TGTCTTTTGGAGCAAGAACTGGCCCATGCTGTGAATGCCTG TGTCTTTTGGAGCAAGAACGGGCCCATGCTGTGAATGCCTG < 41bp 0.819095282002505 0.527086311505139 NA NA prediction 0.584017940994733 Functional Loss - DGKH ENSG00000102780 CDS Human protein_coding chr13:42788688 chr13:42788687 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7533 0 0 1 1 2 DGKH chr13:42788643 3'AG 42788643 Downstream 45bp 7333 chr13 42788687 42788687 1 + T G STAD 42788688 + 42788668 42788708 41 TGTCTTTTGGAGCAAGAACTGGCCCATGCTGTGAATGCCTG TGTCTTTTGGAGCAAGAACGGGCCCATGCTGTGAATGCCTG < 41bp 0.819095282002505 0.527086311505139 NA NA prediction 0.584017940994733 Functional Loss - DGKH ENSG00000102780 CDS Human protein_coding chr13:42788688 chr13:42788687 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7533 0 0 1 1 2 DGKH chr13:42788748 5'GT 42788748 Upstream 62bp 7334 chr22 20127706 20127706 1 + T G LUAD 20127707 + 20127687 20127727 41 CTCACTGGCTTCCATGTGGTGCTGGTCACTCGGGGGCGCAC CTCACTGGCTTCCATGTGGGGCTGGTCACTCGGGGGCGCAC < 41bp 0.848152921399336 0.556168324550755 NA NA prediction 0.583969193697161 Functional Loss - ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20127707 chr22:20127706 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_7535 0 0 1 0 2 ZDHHC8 chr22:20127638 3'AG 20127638 Downstream 69bp 7335 chr22 20127706 20127706 1 + T G LUAD 20127707 + 20127687 20127727 41 CTCACTGGCTTCCATGTGGTGCTGGTCACTCGGGGGCGCAC CTCACTGGCTTCCATGTGGGGCTGGTCACTCGGGGGCGCAC < 41bp 0.848152921399336 0.556168324550755 NA NA prediction 0.583969193697161 Functional Loss - ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20127707 chr22:20127706 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_7535 0 0 1 0 2 ZDHHC8 chr22:20127740 5'GT 20127740 Upstream 35bp 7336 chr3 1425079 1425079 1 + T G STAD 1425080 + 1425060 1425100 41 AATAGAAACACTGGAAGAGTGCTGGGCTATGAGGTAATCCA AATAGAAACACTGGAAGAGGGCTGGGCTATGAGGTAATCCA < 41bp 0.804716725827948 0.512769612224239 NA NA prediction 0.583894227207419 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425080 chr3:1425079 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7536 0 0 0 0 1 CNTN6 chr3:1425092 5'GT 1425092 Upstream 14bp 7337 chr2 97483140 97483140 1 + T G COAD 97483141 + 97483121 97483161 41 CTTCGTGGATCCCGAAGACTGCACGCCGCTCAGCACCATCA CTTCGTGGATCCCGAAGACGGCACGCCGCTCAGCACCATCA < 41bp 0.791762979135205 0.475407963348459 NA NA prediction 0.583525958270411 Functional Loss - CNNM3 ENSG00000168763 CDS Human protein_coding chr2:97483141 chr2:97483140 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_7538 0 0 1 0 1 CNNM3 chr2:97483239 5'GT 97483239 Upstream 100bp 7338 chr16 82069222 82069222 1 + T G STAD 82069223 + 82069203 82069243 41 GATCCTCTTCTCGGTGTCATGCTTCCTCATGTATACTTACT GATCCTCTTCTCGGTGTCAGGCTTCCTCATGTATACTTACT < 41bp 0.791711708640789 0.485588962078051 NA NA prediction 0.583423417281578 Functional Loss - HSD17B2 ENSG00000086696 CDS Human protein_coding chr16:82069223 chr16:82069222 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_7539 0 0 0 0 1 HSD17B2 chr16:82069294 5'GT 82069294 Upstream 73bp 7339 chr12 109519153 109519153 1 + T G PRAD 109519154 + 109519134 109519174 41 TTCAGAGTCCTGTTCGATTTGATACCTTTGATAGCCTTTCA TTCAGAGTCCTGTTCGATTGGATACCTTTGATAGCCTTTCA < 41bp 0.791662249407127 0.475203131195751 NA NA prediction 0.583324498814255 Functional Loss - USP30 ENSG00000135093 CDS Human protein_coding chr12:109519154 chr12:109519153 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7540 0 0 0 0 1 USP30 chr12:109519198 5'GT 109519198 Upstream 46bp 7340 chr2 112779152 112779152 1 + T G SKCM 112779153 + 112779133 112779173 41 GAGTCTACACAAGTAAAAGTGATGTGGTATGTACACAGCTT GAGTCTACACAAGTAAAAGGGATGTGGTATGTACACAGCTT < 41bp 0.791608978764479 0.478909190944002 NA NA prediction 0.583217957528958 Functional Loss - MERTK ENSG00000153208 CDS Human protein_coding chr2:112779153 chr2:112779152 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_7541 0 0 1 0 1 MERTK chr2:112779158 5'GT 112779158 Upstream 7bp 7341 chr3 113667722 113667722 1 + T G LUSC 113667723 + 113667703 113667743 41 TGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGGA TGAATTGGAGCCCCTGTGCGGCTGCGAGTACATAGATCGGA < 41bp 0.791595497922384 0.497379660153975 NA NA prediction 0.583190995844767 Functional Loss - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113667723 chr3:113667722 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7542 0 0 0 0 3 ZDHHC23 chr3:113667641 3'AG 113667641 Downstream 82bp 7342 chr3 113667722 113667722 1 + T G LUSC 113667723 + 113667703 113667743 41 TGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGGA TGAATTGGAGCCCCTGTGCGGCTGCGAGTACATAGATCGGA < 41bp 0.791595497922384 0.497379660153975 NA NA prediction 0.583190995844767 Functional Loss - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113667723 chr3:113667722 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7542 0 0 0 0 3 ZDHHC23 chr3:113667667 3'AG 113667667 Downstream 56bp 7343 chr3 113667722 113667722 1 + T G LUSC 113667723 + 113667703 113667743 41 TGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGGA TGAATTGGAGCCCCTGTGCGGCTGCGAGTACATAGATCGGA < 41bp 0.791595497922384 0.497379660153975 NA NA prediction 0.583190995844767 Functional Loss - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113667723 chr3:113667722 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7542 0 0 0 0 3 ZDHHC23 chr3:113667810 5'GT 113667810 Upstream 89bp 7344 chr7 128488648 128488648 1 + T G LUAD 128488649 + 128488629 128488669 41 AGGTCCTCCCAGCTCATGATGCCAGCAAGGTGCGGGCCAGC AGGTCCTCCCAGCTCATGAGGCCAGCAAGGTGCGGGCCAGC < 41bp 0.791549997804042 0.467417991234879 NA NA prediction 0.583099995608085 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128488649 chr7:128488648 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7543 0 0 1 0 1 FLNC chr7:128488615 3'AG 128488615 Downstream 34bp 7345 chr19 49129357 49129357 1 + T G rs151257086 49129358 + 49129338 49129378 41 AGCGGCTGCGCCCCAAACCTGAAGCCAGGCCCCGGGGTGGC AGCGGCTGCGCCCCAAACCGGAAGCCAGGCCCCGGGGTGGC < 41bp 0.82101512696698 0.529527913402564 NA NA prediction 0.582974427128832 Functional Loss - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49129358 chr19:49129357 synonymous SNV . 0 20 hm7G_associated_SNPs_7544 0 0 0 0 1 SPHK2 chr19:49129325 3'AG 49129325 Downstream 33bp 7346 chr10 50863479 50863479 1 + T G BRCA 50863480 + 50863460 50863500 41 ATGCCATCCGTGCCCAGACTGCATACACAGTCATGGTGAGT ATGCCATCCGTGCCCAGACGGCATACACAGTCATGGTGAGT < 41bp 0.837465022944888 0.546019169682959 NA NA prediction 0.582891706523859 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50863480 chr10:50863479 synonymous SNV . 0 20 hm7G_associated_SNPs_7545 0 0 0 0 2 CHAT chr10:50863432 3'AG 50863432 Downstream 48bp 7347 chr10 50863479 50863479 1 + T G BRCA 50863480 + 50863460 50863500 41 ATGCCATCCGTGCCCAGACTGCATACACAGTCATGGTGAGT ATGCCATCCGTGCCCAGACGGCATACACAGTCATGGTGAGT < 41bp 0.837465022944888 0.546019169682959 NA NA prediction 0.582891706523859 Functional Loss - CHAT ENSG00000070748 CDS Human protein_coding chr10:50863480 chr10:50863479 synonymous SNV . 0 20 hm7G_associated_SNPs_7545 0 0 0 0 2 CHAT chr10:50863494 5'GT 50863494 Upstream 16bp 7348 chr20 10273588 10273588 1 + T G LUSC 10273589 + 10273569 10273609 41 ACCAAGACATGAAGGAGGCTGAGAAAAATTTAAAAGATTTA ACCAAGACATGAAGGAGGCGGAGAAAAATTTAAAAGATTTA < 41bp 0.80772280696372 0.516476475927221 NA NA prediction 0.582492662072998 Functional Loss - SNAP25 ENSG00000132639 CDS Human protein_coding chr20:10273589 chr20:10273588 synonymous SNV . 0 20 hm7G_associated_SNPs_7548 0 0 0 0 2 SNAP25 chr20:10273530 3'AG 10273530 Downstream 59bp 7349 chr20 10273588 10273588 1 + T G LUSC 10273589 + 10273569 10273609 41 ACCAAGACATGAAGGAGGCTGAGAAAAATTTAAAAGATTTA ACCAAGACATGAAGGAGGCGGAGAAAAATTTAAAAGATTTA < 41bp 0.80772280696372 0.516476475927221 NA NA prediction 0.582492662072998 Functional Loss - SNAP25 ENSG00000132639 CDS Human protein_coding chr20:10273589 chr20:10273588 synonymous SNV . 0 20 hm7G_associated_SNPs_7548 0 0 0 0 2 SNAP25 chr20:10273647 5'GT 10273647 Upstream 60bp 7350 chr15 31202898 31202898 1 + T G PAAD 31202899 + 31202879 31202919 41 CTAGCCAAGACCTTCCACTTGGTGAATCCCAATGGACAGAA CTAGCCAAGACCTTCCACTGGGTGAATCCCAATGGACAGAA < 41bp 0.791241879241301 0.471627342026233 NA NA prediction 0.582483758482602 Functional Loss - FAN1 ENSG00000198690 CDS Human protein_coding chr15:31202899 chr15:31202898 nonsynonymous SNV 0.930 4 20 hm7G_associated_SNPs_7550 0 0 1 0 1 FAN1 chr15:31202817 3'AG 31202817 Downstream 82bp 7351 chr20 29625881 29625881 1 + T G rs534776411 29625882 + 29625862 29625902 41 TTAATGTACAGAATCGCCCTGAAATCTGGCTATGGAAAATA TTAATGTACAGAATCGCCCGGAAATCTGGCTATGGAAAATA < 41bp 0.802192826670404 0.511060003360127 NA NA prediction 0.582265646620554 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29625882 chr20:29625881 nonsynonymous SNV 0.591 4 20 hm7G_associated_SNPs_7552 0 0 1 0 1 FRG1BP;FRG1DP chr20:29625873 3'AG 29625873 Downstream 9bp 7352 chr22 41735080 41735080 1 + T G PRAD 41735081 + 41735061 41735101 41 CCCCTGTTCCCTCACGTTCTGGACCTGCTGGCCCCCCTGGA CCCCTGTTCCCTCACGTTCGGGACCTGCTGGCCCCCCTGGA < 41bp 0.842939441660665 0.551838812870274 NA NA prediction 0.582201257580782 Functional Loss - ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41735081 chr22:41735080 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_7553 0 0 1 0 1 ZC3H7B chr22:41735005 3'AG 41735005 Downstream 76bp 7353 chr12 99093302 99093302 1 + T G rs143097832 99093303 + 99093283 99093323 41 TGAAGTGTTGTTCGTGGTCTGCTGATGGTGCAAGGATAATG TGAAGTGTTGTTCGTGGTCGGCTGATGGTGCAAGGATAATG < 41bp 0.81773958934631 0.526647067314865 NA NA prediction 0.58218504406289 Functional Loss - APAF1 ENSG00000120868 CDS Human protein_coding chr12:99093303 chr12:99093302 synonymous SNV . 0 20 hm7G_associated_SNPs_7554 0 0 1 0 1 APAF1 chr12:99093347 5'GT 99093347 Upstream 46bp 7354 chr15 81235392 81235392 1 + T G LIHC 81235393 + 81235373 81235413 41 AGCTTCAGGAACTCCATTCTGCAAGGCATACCATGGCAGCT AGCTTCAGGAACTCCATTCGGCAAGGCATACCATGGCAGCT < 41bp 0.791032220432072 0.470229966714384 NA NA prediction 0.582064440864144 Functional Loss - CEMIP ENSG00000103888 CDS Human protein_coding chr15:81235393 chr15:81235392 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_7555 0 0 0 0 1 CEMIP chr15:81235443 5'GT 81235443 Upstream 52bp 7355 chr17 2883589 2883589 1 + T G UCEC 2883590 + 2883570 2883610 41 GTCTTGTGCAGGTCCAAACTGAAGACGGTACATGAGCGGAT GTCTTGTGCAGGTCCAAACGGAAGACGGTACATGAGCGGAT < 41bp 0.832428129162281 0.541482431301155 NA NA prediction 0.581891395722252 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2883590 chr17:2883589 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7557 0 0 0 0 2 RAP1GAP2 chr17:2883581 3'AG 2883581 Downstream 9bp 7356 chr17 2883589 2883589 1 + T G UCEC 2883590 + 2883570 2883610 41 GTCTTGTGCAGGTCCAAACTGAAGACGGTACATGAGCGGAT GTCTTGTGCAGGTCCAAACGGAAGACGGTACATGAGCGGAT < 41bp 0.832428129162281 0.541482431301155 NA NA prediction 0.581891395722252 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2883590 chr17:2883589 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7557 0 0 0 0 2 RAP1GAP2 chr17:2883659 5'GT 2883659 Upstream 71bp 7357 chr19 56390297 56390297 1 + T G COAD 56390298 + 56390278 56390318 41 GTTGTACTCTGTGAGGCCCTGAGACACCCAGAGTGTGCCCT GTTGTACTCTGTGAGGCCCGGAGACACCCAGAGTGTGCCCT < 41bp 0.822207379905678 0.531632211063453 NA NA prediction 0.581150337684449 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56390298 chr19:56390297 nonsynonymous SNV 0.161 3 20 hm7G_associated_SNPs_7563 0 0 0 0 1 NLRP4 chr19:56390330 5'GT 56390330 Upstream 34bp 7358 chr8 42025317 42025317 1 + T G COAD 42025318 + 42025298 42025338 41 CAGTTTAAGATCCAGCAGCTGGCCATTTCTGGTAAGTGACC CAGTTTAAGATCCAGCAGCGGGCCATTTCTGGTAAGTGACC < 41bp 0.790452295062377 0.482139401840273 NA NA prediction 0.580904590124753 Functional Loss - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42025318 chr8:42025317 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_7564 0 0 1 0 1 AP3M2 chr8:42025328 5'GT 42025328 Upstream 12bp 7359 chr3 50614990 50614990 1 + T G rs2232251 50614991 + 50614971 50615011 41 CTGCTATCTCTCTGACCCATGAGAATGCTCAGAGGTAGGTG CTGCTATCTCTCTGACCCAGGAGAATGCTCAGAGGTAGGTG < 41bp 0.843241175660065 0.552850562736762 NA NA prediction 0.580781225846606 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614991 chr3:50614990 nonsynonymous SNV 0.808 0 20 hm7G_associated_SNPs_7566 0 0 1 0 2 HEMK1 chr3:50614940 3'AG 50614940 Downstream 51bp 7360 chr3 50614990 50614990 1 + T G rs2232251 50614991 + 50614971 50615011 41 CTGCTATCTCTCTGACCCATGAGAATGCTCAGAGGTAGGTG CTGCTATCTCTCTGACCCAGGAGAATGCTCAGAGGTAGGTG < 41bp 0.843241175660065 0.552850562736762 NA NA prediction 0.580781225846606 Functional Loss - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50614991 chr3:50614990 nonsynonymous SNV 0.808 0 20 hm7G_associated_SNPs_7566 0 0 1 0 2 HEMK1 chr3:50615004 5'GT 50615004 Upstream 15bp 7361 chr3 158539849 158539849 1 + T G UCEC 158539850 + 158539830 158539870 41 AACAGGGAAGAACATCATCTGGGTTCTTTGCGCAGTAGCAG AACAGGGAAGAACATCATCGGGGTTCTTTGCGCAGTAGCAG < 41bp 0.840905619088962 0.550535923690424 NA NA prediction 0.580739390797076 Functional Loss - MFSD1 ENSG00000118855 CDS Human protein_coding chr3:158539850 chr3:158539849 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7567 0 0 0 0 1 MFSD1 chr3:158539929 5'GT 158539929 Upstream 81bp 7362 chr6 109763424 109763424 1 + T G rs143732618 109763425 + 109763405 109763445 41 GCCTGCAGATCCATCATGGTGACTGGTTCAGTGGGAAGGCT GCCTGCAGATCCATCATGGGGACTGGTTCAGTGGGAAGGCT < 41bp 0.848049031389715 0.557758429609258 NA NA prediction 0.580581203560915 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763425 chr6:109763424 synonymous SNV . 0 20 hm7G_associated_SNPs_7569 0 0 0 0 2 SMPD2 chr6:109763413 3'AG 109763413 Downstream 12bp 7363 chr6 109763424 109763424 1 + T G rs143732618 109763425 + 109763405 109763445 41 GCCTGCAGATCCATCATGGTGACTGGTTCAGTGGGAAGGCT GCCTGCAGATCCATCATGGGGACTGGTTCAGTGGGAAGGCT < 41bp 0.848049031389715 0.557758429609258 NA NA prediction 0.580581203560915 Functional Loss - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763425 chr6:109763424 synonymous SNV . 0 20 hm7G_associated_SNPs_7569 0 0 0 0 2 SMPD2 chr6:109763502 5'GT 109763502 Upstream 79bp 7364 chr9 140676797 140676797 1 + T G BRCA 140676798 + 140676778 140676818 41 CAGAATAAGCGCTCTCCACTGCACGCCGCGGCAGAGGCTGG CAGAATAAGCGCTCTCCACGGCACGCCGCGGCAGAGGCTGG < 41bp 0.790140130629347 0.451183898376265 NA NA prediction 0.580280261258694 Functional Loss - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140676798 chr9:140676797 nonsynonymous SNV 0.072 5 20 hm7G_associated_SNPs_7571 0 0 1 0 2 EHMT1 chr9:140676743 3'AG 140676743 Downstream 55bp 7365 chr9 140676797 140676797 1 + T G BRCA 140676798 + 140676778 140676818 41 CAGAATAAGCGCTCTCCACTGCACGCCGCGGCAGAGGCTGG CAGAATAAGCGCTCTCCACGGCACGCCGCGGCAGAGGCTGG < 41bp 0.790140130629347 0.451183898376265 NA NA prediction 0.580280261258694 Functional Loss - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140676798 chr9:140676797 nonsynonymous SNV 0.072 5 20 hm7G_associated_SNPs_7571 0 0 1 0 2 EHMT1 chr9:140676849 5'GT 140676849 Upstream 53bp 7366 chr18 60217633 60217633 1 + T G UCEC 60217634 + 60217614 60217654 41 AAGACCATCTTAAGAGCCCTGAATCAGGGTTCCTTGAAAAG AAGACCATCTTAAGAGCCCGGAATCAGGGTTCCTTGAAAAG < 41bp 0.827852935231769 0.537742190532113 NA NA prediction 0.580221489399313 Functional Loss - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60217634 chr18:60217633 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7572 0 0 1 0 2 ZCCHC2 chr18:60217581 3'AG 60217581 Downstream 53bp 7367 chr18 60217633 60217633 1 + T G UCEC 60217634 + 60217614 60217654 41 AAGACCATCTTAAGAGCCCTGAATCAGGGTTCCTTGAAAAG AAGACCATCTTAAGAGCCCGGAATCAGGGTTCCTTGAAAAG < 41bp 0.827852935231769 0.537742190532113 NA NA prediction 0.580221489399313 Functional Loss - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60217634 chr18:60217633 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7572 0 0 1 0 2 ZCCHC2 chr18:60217693 5'GT 60217693 Upstream 61bp 7368 chr11 57571235 57571235 1 + T G STAD 57571236 + 57571216 57571256 41 ACTGTAAGCCACGCCACATTGAGTGGGAATCGGTGCTCACC ACTGTAAGCCACGCCACATGGAGTGGGAATCGGTGCTCACC < 41bp 0.825263179194536 0.535232779729742 NA NA prediction 0.580060798929589 Functional Loss - CTNND1 ENSG00000198561 CDS Human protein_coding chr11:57571236 chr11:57571235 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_7573 0 0 1 0 1 CTNND1 chr11:57571276 5'GT 57571276 Upstream 42bp 7369 chr3 41266826 41266826 1 + T G STAD 41266827 + 41266807 41266847 41 TGAATTCCTGTATTACAGGTGGTGGTTAATAAGGCTGCAGT TGAATTCCTGTATTACAGGGGGTGGTTAATAAGGCTGCAGT < 41bp 0.81213914339644 0.522136961523209 NA NA prediction 0.580004363746462 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41266827 chr3:41266826 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_7574 0 0 1 0 1 CTNNB1 chr3:41266825 3'AG 41266825 Downstream 2bp 7370 chr19 50302071 50302071 1 + T G rs199628077 50302072 + 50302052 50302092 41 TCCCCAGAGGATGCGGCTGTGAAGGGGCGGCTGGTGGAATG TCCCCAGAGGATGCGGCTGGGAAGGGGCGGCTGGTGGAATG < 41bp 0.844575708976516 0.554578407466089 NA NA prediction 0.579994603020855 Functional Loss - AP2A1 ENSG00000196961 CDS Human protein_coding chr19:50302072 chr19:50302071 nonsynonymous SNV 0.852 2 20 hm7G_associated_SNPs_7575 0 0 1 0 1 AP2A1 chr19:50302059 3'AG 50302059 Downstream 13bp 7371 chr3 46944036 46944036 1 + T G COAD 46944037 + 46944017 46944057 41 AAGCTGCTCAAATCCACGCTGGTGCTCATGCCCCTCTTTGG AAGCTGCTCAAATCCACGCGGGTGCTCATGCCCCTCTTTGG < 41bp 0.841457965766497 0.551462881967107 NA NA prediction 0.579990167598779 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46944037 chr3:46944036 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_7576 0 0 0 0 1 PTH1R chr3:46944016 3'AG 46944016 Downstream 21bp 7372 chr15 45556921 45556921 1 + T G COAD 45556922 + 45556902 45556942 41 GGATCTTGGTCATCAGAACTGATCTTGGATATACTGTATTT GGATCTTGGTCATCAGAACGGATCTTGGATATACTGTATTT < 41bp 0.789823300683471 0.471987409853808 NA NA prediction 0.579646601366942 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45556922 chr15:45556921 synonymous SNV . 0 20 hm7G_associated_SNPs_7580 0 0 0 0 2 SLC28A2 chr15:45556853 3'AG 45556853 Downstream 69bp 7373 chr15 45556921 45556921 1 + T G COAD 45556922 + 45556902 45556942 41 GGATCTTGGTCATCAGAACTGATCTTGGATATACTGTATTT GGATCTTGGTCATCAGAACGGATCTTGGATATACTGTATTT < 41bp 0.789823300683471 0.471987409853808 NA NA prediction 0.579646601366942 Functional Loss - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45556922 chr15:45556921 synonymous SNV . 0 20 hm7G_associated_SNPs_7580 0 0 0 0 2 SLC28A2 chr15:45556966 5'GT 45556966 Upstream 46bp 7374 chr5 34757629 34757629 1 + T G rs114642247 34757630 + 34757610 34757650 41 AGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTG AGGCCGTGGAGAATGGAGAGGCGGAGAAGGTGGCCTCACTG < 41bp 0.828311487583578 0.538542141869619 NA NA prediction 0.579538691427918 Functional Loss - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34757630 chr5:34757629 nonsynonymous SNV 0.604 2 20 hm7G_associated_SNPs_7581 0 0 1 0 3 RAI14 chr5:34757573 3'AG 34757573 Downstream 57bp 7375 chr5 34757629 34757629 1 + T G rs114642247 34757630 + 34757610 34757650 41 AGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTG AGGCCGTGGAGAATGGAGAGGCGGAGAAGGTGGCCTCACTG < 41bp 0.828311487583578 0.538542141869619 NA NA prediction 0.579538691427918 Functional Loss - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34757630 chr5:34757629 nonsynonymous SNV 0.604 2 20 hm7G_associated_SNPs_7581 0 0 1 0 3 RAI14 chr5:34757687 5'GT 34757687 Upstream 59bp 7376 chr5 34757629 34757629 1 + T G rs114642247 34757630 + 34757610 34757650 41 AGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTG AGGCCGTGGAGAATGGAGAGGCGGAGAAGGTGGCCTCACTG < 41bp 0.828311487583578 0.538542141869619 NA NA prediction 0.579538691427918 Functional Loss - RAI14 ENSG00000039560 CDS Human protein_coding chr5:34757630 chr5:34757629 nonsynonymous SNV 0.604 2 20 hm7G_associated_SNPs_7581 0 0 1 0 3 RAI14 chr5:34757703 5'GT 34757703 Upstream 75bp 7377 chr14 24880382 24880382 1 + T G KIRC 24880383 + 24880363 24880403 41 CACTGTGTTTGTACCCACCTGGCAGCTGAAGAAGAACCGGA CACTGTGTTTGTACCCACCGGGCAGCTGAAGAAGAACCGGA < 41bp 0.85309522456727 0.5633559486978 NA NA prediction 0.579478551738939 Functional Loss - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24880383 chr14:24880382 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7582 0 0 1 0 1 NYNRIN chr14:24880412 5'GT 24880412 Upstream 31bp 7378 chr2 27164931 27164931 1 + T G UCEC 27164932 + 27164912 27164952 41 TTCCCGGAGCCGATGCTGATGTGGTGGTGTGGGACCCAGAA TTCCCGGAGCCGATGCTGAGGTGGTGGTGTGGGACCCAGAA < 41bp 0.78968332471459 0.465813733687854 NA NA prediction 0.57936664942918 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27164932 chr2:27164931 nonsynonymous SNV 0.726 5 20 hm7G_associated_SNPs_7583 0 0 1 0 1 DPYSL5 chr2:27164960 5'GT 27164960 Upstream 30bp 7379 chr1 206903439 206903439 1 + T G UCEC 206903440 + 206903420 206903460 41 CTTGTTATACACCGTACTATGTGGGTAAGTCCACAGGGGGC CTTGTTATACACCGTACTAGGTGGGTAAGTCCACAGGGGGC < 41bp 0.789556927386447 0.481939614649323 NA NA prediction 0.579113854772895 Functional Loss - MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206903440 chr1:206903439 stopgain 0.997 0 20 hm7G_associated_SNPs_7584 0 0 1 0 1 MAPKAPK2 chr1:206903443 5'GT 206903443 Upstream 5bp 7380 chr14 102805447 102805447 1 + T G UCEC 102805448 + 102805428 102805468 41 CAGGCTGCGGAGGAGGGACTGGCCTCAGTGAAAAGGCCCAG CAGGCTGCGGAGGAGGGACGGGCCTCAGTGAAAAGGCCCAG < 41bp 0.789507738666997 0.475245460359626 NA NA prediction 0.579015477333994 Functional Loss - ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805448 chr14:102805447 nonsynonymous SNV 0.110 2 20 hm7G_associated_SNPs_7585 0 0 1 0 1 ZNF839 chr14:102805431 3'AG 102805431 Downstream 17bp 7381 chr7 128846155 128846155 1 + T G LUAD 128846156 + 128846136 128846176 41 AAGACCTCCTACTTCCACCTGCTCACCTGGTCACTCCCCTT AAGACCTCCTACTTCCACCGGCTCACCTGGTCACTCCCCTT < 41bp 0.857837762435151 0.568453827637436 NA NA prediction 0.57876786959543 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128846156 chr7:128846155 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_7587 0 0 0 0 1 SMO chr7:128846210 5'GT 128846210 Upstream 56bp 7382 chr6 54804576 54804576 1 + T G GBM 54804577 + 54804557 54804597 41 GACAACTTGTTGAGTCCTTTGATGAAGAATTTAGAACTCTC GACAACTTGTTGAGTCCTTGGATGAAGAATTTAGAACTCTC < 41bp 0.79459294477652 0.505243579364356 NA NA prediction 0.578698730824329 Functional Loss - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54804577 chr6:54804576 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_7588 0 0 0 0 1 FAM83B chr6:54804504 3'AG 54804504 Downstream 73bp 7383 chr6 26388484 26388484 1 + T G LUAD 26388485 + 26388465 26388505 41 TGCTCTGTCAACAACACCCTGCTCGGCCAGGAGAAGGAAAC TGCTCTGTCAACAACACCCGGCTCGGCCAGGAGAAGGAAAC < 41bp 0.839024602723221 0.549692646816131 NA NA prediction 0.57866391181418 Functional Loss - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26388485 chr6:26388484 nonsynonymous SNV 0.732 2 20 hm7G_associated_SNPs_7590 0 0 1 0 1 BTN2A2 chr6:26388522 5'GT 26388522 Upstream 39bp 7384 chr7 143039157 143039157 1 + T G SKCM 143039158 + 143039138 143039178 41 AACATGGTGGCCCAGAGCCTGCAGCCCTCTCTCTATGACAG AACATGGTGGCCCAGAGCCGGCAGCCCTCTCTCTATGACAG < 41bp 0.789322644795904 0.463814012443072 NA NA prediction 0.578645289591809 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143039158 chr7:143039157 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_7591 0 0 0 0 1 CLCN1 chr7:143039235 5'GT 143039235 Upstream 79bp 7385 chr9 135940439 135940439 1 + T G rs113056079 135940440 + 135940420 135940460 41 ATCTCAGTCTCCCGGGACCTGCCCGTTATGATCTGGATCTA ATCTCAGTCTCCCGGGACCGGCCCGTTATGATCTGGATCTA < 41bp 0.846634287163443 0.557440848838063 NA NA prediction 0.578386876650759 Functional Loss - CEL ENSG00000170835 CDS Human protein_coding chr9:135940440 chr9:135940439 nonsynonymous SNV 0.229 3 20 hm7G_associated_SNPs_7594 2 0 0 0 1 CEL chr9:135940427 3'AG 135940427 Downstream 13bp 7386 chr4 110897297 110897297 1 + T G UCEC 110897298 + 110897278 110897318 41 TAACGATTGACTTCTTAACTGACAAGTTGTACTGGTGCGAT TAACGATTGACTTCTTAACGGACAAGTTGTACTGGTGCGAT < 41bp 0.789046368718136 0.475140527019415 NA NA prediction 0.578092737436273 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110897298 chr4:110897297 synonymous SNV . 0 20 hm7G_associated_SNPs_7596 0 0 0 0 1 EGF chr4:110897391 5'GT 110897391 Upstream 95bp 7387 chr17 42851738 42851738 1 + T G CESC 42851739 + 42851719 42851759 41 CCCTGTCCCACGGCGGGGGTGTGAACGAGGTGAGCAGTGGG CCCTGTCCCACGGCGGGGGGGTGAACGAGGTGAGCAGTGGG < 41bp 0.836714551371222 0.547772411030212 NA NA prediction 0.57788428068202 Functional Loss - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42851739 chr17:42851738 synonymous SNV . 0 20 hm7G_associated_SNPs_7597 0 0 0 0 2 ADAM11 chr17:42851663 3'AG 42851663 Downstream 76bp 7388 chr17 42851738 42851738 1 + T G CESC 42851739 + 42851719 42851759 41 CCCTGTCCCACGGCGGGGGTGTGAACGAGGTGAGCAGTGGG CCCTGTCCCACGGCGGGGGGGTGAACGAGGTGAGCAGTGGG < 41bp 0.836714551371222 0.547772411030212 NA NA prediction 0.57788428068202 Functional Loss - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42851739 chr17:42851738 synonymous SNV . 0 20 hm7G_associated_SNPs_7597 0 0 0 0 2 ADAM11 chr17:42851747 5'GT 42851747 Upstream 10bp 7389 chr1 10003514 10003514 1 + T G rs116413132 10003515 + 10003495 10003535 41 ACCGAGATGTTCCACTCGCTGGCGTCCGGGCCGCTGGTGAT ACCGAGATGTTCCACTCGCGGGCGTCCGGGCCGCTGGTGAT < 41bp 0.807274026339702 0.518493902607774 NA NA prediction 0.577560247463855 Functional Loss - NMNAT1 ENSG00000228150 ncRNA_intronic Human sense_intronic chr1:10003515 chr1:10003514 . . 0 20 hm7G_associated_SNPs_7602 0 0 1 0 1 NMNAT1 chr1:10003573 5'GT 10003573 Upstream 60bp 7390 chr10 98080455 98080455 1 + T G UCEC 98080456 + 98080436 98080476 41 CATTTATGAGAGCAGCTTCTGTATTGAAATCTCTGCCATTC CATTTATGAGAGCAGCTTCGGTATTGAAATCTCTGCCATTC < 41bp 0.812260006979787 0.523513974332768 NA NA prediction 0.577492065294038 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98080456 chr10:98080455 synonymous SNV . 0 20 hm7G_associated_SNPs_7604 0 0 0 0 2 DNTT chr10:98080375 3'AG 98080375 Downstream 81bp 7391 chr10 98080455 98080455 1 + T G UCEC 98080456 + 98080436 98080476 41 CATTTATGAGAGCAGCTTCTGTATTGAAATCTCTGCCATTC CATTTATGAGAGCAGCTTCGGTATTGAAATCTCTGCCATTC < 41bp 0.812260006979787 0.523513974332768 NA NA prediction 0.577492065294038 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98080456 chr10:98080455 synonymous SNV . 0 20 hm7G_associated_SNPs_7604 0 0 0 0 2 DNTT chr10:98080545 5'GT 98080545 Upstream 91bp 7392 chrX 55116949 55116949 1 + T G rs370096142 55116950 + 55116930 55116970 41 CTTAGGTCCAGGAGCCCACTGAGGAAAAACGTCAAGAAGAG CTTAGGTCCAGGAGCCCACGGAGGAAAAACGTCAAGAAGAG < 41bp 0.788727979266293 0.485800541767482 NA NA prediction 0.577455958532586 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55116950 chrX:55116949 synonymous SNV . 0 20 hm7G_associated_SNPs_7605 0 0 0 0 2 PAGE2 chrX:55116935 3'AG 55116935 Downstream 15bp 7393 chrX 55116949 55116949 1 + T G rs370096142 55116950 + 55116930 55116970 41 CTTAGGTCCAGGAGCCCACTGAGGAAAAACGTCAAGAAGAG CTTAGGTCCAGGAGCCCACGGAGGAAAAACGTCAAGAAGAG < 41bp 0.788727979266293 0.485800541767482 NA NA prediction 0.577455958532586 Functional Loss - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55116950 chrX:55116949 synonymous SNV . 0 20 hm7G_associated_SNPs_7605 0 0 0 0 2 PAGE2 chrX:55117043 5'GT 55117043 Upstream 95bp 7394 chr13 76382323 76382323 1 + T G COAD 76382324 + 76382304 76382344 41 CTTAGGCACAAGAAAAGGCTGATGGTGGAGAGGTCAGAGTG CTTAGGCACAAGAAAAGGCGGATGGTGGAGAGGTCAGAGTG < 41bp 0.790287114125624 0.501577907168468 NA NA prediction 0.577418413914313 Functional Loss - LMO7 ENSG00000136153 CDS Human protein_coding chr13:76382324 chr13:76382323 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7606 0 0 1 0 1 LMO7 chr13:76382335 5'GT 76382335 Upstream 13bp 7395 chr2 74781883 74781883 1 + T G UCEC 74781884 + 74781864 74781904 41 AAGGAACCGCCGGGGGCCATGGACGGAGCAGTGATGGAAGG AAGGAACCGCCGGGGGCCAGGGACGGAGCAGTGATGGAAGG < 41bp 0.834779314918906 0.54627904641009 NA NA prediction 0.577000537017632 Functional Loss - DOK1 ENSG00000115325 CDS Human protein_coding chr2:74781884 chr2:74781883 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7609 0 0 0 0 1 DOK1 chr2:74781941 5'GT 74781941 Upstream 59bp 7396 chr4 166996037 166996037 1 + T G UCEC 166996038 + 166996018 166996058 41 TCTCTTTGCTAGACAAAGATGAATGCTCTAAGGATAATGGT TCTCTTTGCTAGACAAAGAGGAATGCTCTAAGGATAATGGT < 41bp 0.788451048731162 0.493491142952086 NA NA prediction 0.576902097462323 Functional Loss - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166996038 chr4:166996037 nonsynonymous SNV 0.720 4 20 hm7G_associated_SNPs_7611 0 0 0 0 1 TLL1 chr4:166996030 3'AG 166996030 Downstream 8bp 7397 chr1 109446860 109446860 1 + T G UCEC 109446861 + 109446841 109446881 41 TGTCTGAAAATACTGAAATTGATAGCAGTTTGAATGGTAAG TGTCTGAAAATACTGAAATGGATAGCAGTTTGAATGGTAAG < 41bp 0.788419333800291 0.496090246900771 NA NA prediction 0.576838667600582 Functional Loss - GPSM2 ENSG00000121957 CDS Human protein_coding chr1:109446861 chr1:109446860 nonsynonymous SNV 0.773 1 20 hm7G_associated_SNPs_7612 0 0 1 0 1 GPSM2 chr1:109446876 5'GT 109446876 Upstream 17bp 7398 chr3 44867677 44867677 1 + T G UCEC 44867678 + 44867658 44867698 41 GAAACTCTGAAATCTGATCTGAATGTATGTTAAGAAGGGTG GAAACTCTGAAATCTGATCGGAATGTATGTTAAGAAGGGTG < 41bp 0.790079650438833 0.501678139066981 NA NA prediction 0.576803022743703 Functional Loss - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44867678 chr3:44867677 nonsynonymous SNV 0.937 4 20 hm7G_associated_SNPs_7613 0 0 1 0 1 KIF15 chr3:44867681 5'GT 44867681 Upstream 5bp 7399 chr10 135025005 135025005 1 + T G COAD 135025006 + 135024986 135025026 41 GCAGGCCTGGGTGGAGGACTGCTACGCTGTGGACTTCCCTC GCAGGCCTGGGTGGAGGACGGCTACGCTGTGGACTTCCCTC < 41bp 0.852184321933531 0.563806429991477 NA NA prediction 0.576755783884108 Functional Loss - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135025006 chr10:135025005 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_7614 0 0 0 0 2 KNDC1 chr10:135024926 3'AG 135024926 Downstream 80bp 7400 chr10 135025005 135025005 1 + T G COAD 135025006 + 135024986 135025026 41 GCAGGCCTGGGTGGAGGACTGCTACGCTGTGGACTTCCCTC GCAGGCCTGGGTGGAGGACGGCTACGCTGTGGACTTCCCTC < 41bp 0.852184321933531 0.563806429991477 NA NA prediction 0.576755783884108 Functional Loss - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135025006 chr10:135025005 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_7614 0 0 0 0 2 KNDC1 chr10:135025073 5'GT 135025073 Upstream 69bp 7401 chr6 160188185 160188185 1 + T G LUSC 160188186 + 160188166 160188206 41 GGATAGGAGACTCCAGCATTGTGGTTGCAGGAGGCATGGAA GGATAGGAGACTCCAGCATGGTGGTTGCAGGAGGCATGGAA < 41bp 0.788225845093627 0.468338677269687 NA NA prediction 0.576451690187254 Functional Loss - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160188186 chr6:160188185 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7616 0 0 1 0 1 ACAT2 chr6:160188218 5'GT 160188218 Upstream 34bp 7402 chr13 113030765 113030765 1 + T G STAD 113030766 + 113030746 113030786 41 TGTGCTGTTGGCAAGAAACTGAGCTCCGGCCGAGAACCGTG TGTGCTGTTGGCAAGAAACGGAGCTCCGGCCGAGAACCGTG < 41bp 0.813023735867972 0.52482741454011 NA NA prediction 0.576392642655723 Functional Loss - SPACA7 ENSG00000153498 CDS Human protein_coding chr13:113030766 chr13:113030765 synonymous SNV . 0 20 hm7G_associated_SNPs_7617 0 0 0 0 1 SPACA7 chr13:113030793 5'GT 113030793 Upstream 29bp 7403 chr6 107100212 107100212 1 + T G rs144555270 107100213 + 107100193 107100233 41 CTGGTGAATTCGATGGATGTGCCAGGAATCTTAACCAGATG CTGGTGAATTCGATGGATGGGCCAGGAATCTTAACCAGATG < 41bp 0.788136211981822 0.473557490871709 NA NA prediction 0.576272423963645 Functional Loss - QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107100213 chr6:107100212 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_7618 0 0 1 0 1 QRSL1 chr6:107100259 5'GT 107100259 Upstream 48bp 7404 chr16 2282783 2282783 1 + T G OV 2282784 + 2282764 2282804 41 CCCCTACAAGTGCTCCAAGTGTGGAAAGAGCTTCCGGGAGT CCCCTACAAGTGCTCCAAGGGTGGAAAGAGCTTCCGGGAGT < 41bp 0.78810769604866 0.473767144613859 NA NA prediction 0.576215392097319 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2282784 chr16:2282783 nonsynonymous SNV 0.973 5 20 hm7G_associated_SNPs_7620 0 0 1 0 1 E4F1 chr16:2282757 3'AG 2282757 Downstream 27bp 7405 chr15 80412738 80412738 1 + T G HNSC 80412739 + 80412719 80412759 41 TATGCTTTGTTCCACTGGCTGTGGATTTTATGGAAACCCTC TATGCTTTGTTCCACTGGCGGTGGATTTTATGGAAACCCTC < 41bp 0.788076964344696 0.491873743214145 NA NA prediction 0.576153928689392 Functional Loss - ZFAND6 ENSG00000086666 CDS Human protein_coding chr15:80412739 chr15:80412738 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7621 0 0 1 0 1 ZFAND6 chr15:80412670 3'AG 80412670 Downstream 69bp 7406 chr17 78055758 78055758 1 + T G rs35578653 78055759 + 78055739 78055779 41 TCAGGAGGAAGACGGATGCTGCCATCCGGGAGAAGCTGCAG TCAGGAGGAAGACGGATGCGGCCATCCGGGAGAAGCTGCAG < 41bp 0.861831175008185 0.573790216507748 NA NA prediction 0.576081917000874 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78055759 chr17:78055758 synonymous SNV . 0 20 hm7G_associated_SNPs_7622 2 0 0 0 2 CCDC40 chr17:78055675 3'AG 78055675 Downstream 84bp 7407 chr17 78055758 78055758 1 + T G rs35578653 78055759 + 78055739 78055779 41 TCAGGAGGAAGACGGATGCTGCCATCCGGGAGAAGCTGCAG TCAGGAGGAAGACGGATGCGGCCATCCGGGAGAAGCTGCAG < 41bp 0.861831175008185 0.573790216507748 NA NA prediction 0.576081917000874 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78055759 chr17:78055758 synonymous SNV . 0 20 hm7G_associated_SNPs_7622 2 0 0 0 2 CCDC40 chr17:78055857 5'GT 78055857 Upstream 100bp 7408 chr11 9598059 9598059 1 + T G UCEC 9598060 + 9598040 9598080 41 ACAATTACTGAAAGCAATATGAAGTCCCGGTATACAACAGA ACAATTACTGAAAGCAATAGGAAGTCCCGGTATACAACAGA < 41bp 0.787902612839226 0.481731715458275 NA NA prediction 0.575805225678452 Functional Loss - WEE1 ENSG00000166483 CDS Human protein_coding chr11:9598060 chr11:9598059 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7624 0 0 1 0 1 WEE1 chr11:9598034 3'AG 9598034 Downstream 26bp 7409 chr12 52452502 52452502 1 + T G LUSC 52452503 + 52452483 52452523 41 CTGCAGGAGCCGCGGCGGGTGGAGGAGCTGCAGAACCGCAT CTGCAGGAGCCGCGGCGGGGGGAGGAGCTGCAGAACCGCAT < 41bp 0.831750713352898 0.544076536642517 NA NA prediction 0.575348353420762 Functional Loss - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52452503 chr12:52452502 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_7627 0 0 1 0 1 NR4A1 chr12:52452472 3'AG 52452472 Downstream 31bp 7410 chr1 150234998 150234998 1 + T G SKCM 150234999 + 150234979 150235019 41 AGAGGCCTCAGGGCCTGGCTGTCCTGGGCATCCTAATTGAG AGAGGCCTCAGGGCCTGGCGGTCCTGGGCATCCTAATTGAG < 41bp 0.787665822408616 0.473523074208583 NA NA prediction 0.575331644817232 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150234999 chr1:150234998 synonymous SNV . 0 20 hm7G_associated_SNPs_7629 0 0 0 0 2 CA14 chr1:150234924 3'AG 150234924 Downstream 75bp 7411 chr1 150234998 150234998 1 + T G SKCM 150234999 + 150234979 150235019 41 AGAGGCCTCAGGGCCTGGCTGTCCTGGGCATCCTAATTGAG AGAGGCCTCAGGGCCTGGCGGTCCTGGGCATCCTAATTGAG < 41bp 0.787665822408616 0.473523074208583 NA NA prediction 0.575331644817232 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150234999 chr1:150234998 synonymous SNV . 0 20 hm7G_associated_SNPs_7629 0 0 0 0 2 CA14 chr1:150235019 5'GT 150235019 Upstream 22bp 7412 chr15 51285651 51285651 1 + T G UCEC 51285652 + 51285632 51285672 41 AGGAAAGCAAAACTGGTGATGAAAGTGGAGCTCTGCCTGTT AGGAAAGCAAAACTGGTGAGGAAAGTGGAGCTCTGCCTGTT < 41bp 0.83155758996954 0.543969376675438 NA NA prediction 0.575176426588204 Functional Loss - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51285652 chr15:51285651 nonsynonymous SNV 0.957 0 20 hm7G_associated_SNPs_7630 0 0 0 0 1 AP4E1 chr15:51285567 3'AG 51285567 Downstream 85bp 7413 chr1 186901996 186901996 1 + T G SKCM 186901997 + 186901977 186902017 41 AATCAGGAATTCTGGATTGTGCTACCTACGTTGCTGGTCTT AATCAGGAATTCTGGATTGGGCTACCTACGTTGCTGGTCTT < 41bp 0.824477047843188 0.53689363381624 NA NA prediction 0.575166828053896 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186901997 chr1:186901996 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7631 0 0 0 0 1 PLA2G4A chr1:186902031 5'GT 186902031 Upstream 36bp 7414 chr10 89717766 89717766 1 + T G SKCM 89717767 + 89717747 89717787 41 TTCCACAAACAGAACAAGATGCTAAAAAAGGTTTGTACTTT TTCCACAAACAGAACAAGAGGCTAAAAAAGGTTTGTACTTT < 41bp 0.787530234957091 0.498852503554389 NA NA prediction 0.575060469914183 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89717767 chr10:89717766 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7633 0 0 0 0 1 PTEN chr10:89717776 5'GT 89717776 Upstream 11bp 7415 chr2 158157205 158157205 1 + T G OV 158157206 + 158157186 158157226 41 AGGTGTGGATGTGTGGTGGTGAAATTGAGATCATTCCCTGC AGGTGTGGATGTGTGGTGGGGAAATTGAGATCATTCCCTGC < 41bp 0.812176346616634 0.524684727047146 NA NA prediction 0.574983239138976 Functional Loss - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158157206 chr2:158157205 synonymous SNV . 0 20 hm7G_associated_SNPs_7634 0 0 1 1 1 GALNT5 chr2:158157188 3'AG 158157188 Downstream 18bp 7416 chr8 22424682 22424682 1 + T G SKCM 22424683 + 22424663 22424703 41 GCATCTTCCCTGCTAATTATGTGGAGGTGAGCAGGAGAGAC GCATCTTCCCTGCTAATTAGGTGGAGGTGAGCAGGAGAGAC < 41bp 0.787342254567981 0.479530108417471 NA NA prediction 0.574684509135962 Functional Loss - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22424683 chr8:22424682 stopgain 1.000 1 20 hm7G_associated_SNPs_7635 0 0 0 0 1 SORBS3 chr8:22424688 5'GT 22424688 Upstream 7bp 7417 chr16 1245069 1245069 1 + T G UCEC 1245070 + 1245050 1245090 41 TGAGTGCGGCTCCGAGCGCTGCAACATCCTGGAGGTGAGGG TGAGTGCGGCTCCGAGCGCGGCAACATCCTGGAGGTGAGGG < 41bp 0.78724396114499 0.461492825299933 NA NA prediction 0.57448792228998 Functional Loss - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1245070 chr16:1245069 nonsynonymous SNV 0.639 4 20 hm7G_associated_SNPs_7639 0 0 0 0 1 CACNA1H chr16:1245083 5'GT 1245083 Upstream 15bp 7418 chr19 41725367 41725367 1 + T G OV 41725368 + 41725348 41725388 41 GGCGCTGTGCGGCTGGGCGTGCATGGCCCCCAGGGGTGAGT GGCGCTGTGCGGCTGGGCGGGCATGGCCCCCAGGGGTGAGT < 41bp 0.828138273105865 0.540910726544483 NA NA prediction 0.574455093122763 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41725368 chr19:41725367 nonsynonymous SNV 0.122 0 20 hm7G_associated_SNPs_7640 0 0 1 0 1 AXL chr19:41725382 5'GT 41725382 Upstream 16bp 7419 chr1 95615767 95615767 1 + T G HNSC 95615768 + 95615748 95615788 41 CTTTTTTTTTTTTCAGGGGTGGTCCATCACTTGCAAACGTG CTTTTTTTTTTTTCAGGGGGGGTCCATCACTTGCAAACGTG < 41bp 0.809745235232439 0.522526909963933 NA NA prediction 0.574436650537014 Functional Loss - TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95615768 chr1:95615767 synonymous SNV . 0 20 hm7G_associated_SNPs_7641 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95615764 3'AG 95615764 Downstream 4bp 7420 chr1 95615767 95615767 1 + T G HNSC 95615768 + 95615748 95615788 41 CTTTTTTTTTTTTCAGGGGTGGTCCATCACTTGCAAACGTG CTTTTTTTTTTTTCAGGGGGGGTCCATCACTTGCAAACGTG < 41bp 0.809745235232439 0.522526909963933 NA NA prediction 0.574436650537014 Functional Loss - TMEM56;TMEM56-RWDD3 ENSG00000152078;ENSG00000271092 CDS Human other chr1:95615768 chr1:95615767 synonymous SNV . 0 20 hm7G_associated_SNPs_7641 0 0 1 0 2 TMEM56;TMEM56-RWDD3 chr1:95615822 5'GT 95615822 Upstream 56bp 7421 chr12 109540689 109540689 1 + T G rs199547586 109540690 + 109540670 109540710 41 CTACAGACATAGAGGATTTTGTTCATCCTGGCCATGGAGAT CTACAGACATAGAGGATTTGGTTCATCCTGGCCATGGAGAT < 41bp 0.787073354857008 0.46805404909048 NA NA prediction 0.574146709714017 Functional Loss - UNG ENSG00000076248 CDS Human protein_coding chr12:109540690 chr12:109540689 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_7645 0 0 1 0 2 UNG chr12:109540644 3'AG 109540644 Downstream 46bp 7422 chr12 109540689 109540689 1 + T G rs199547586 109540690 + 109540670 109540710 41 CTACAGACATAGAGGATTTTGTTCATCCTGGCCATGGAGAT CTACAGACATAGAGGATTTGGTTCATCCTGGCCATGGAGAT < 41bp 0.787073354857008 0.46805404909048 NA NA prediction 0.574146709714017 Functional Loss - UNG ENSG00000076248 CDS Human protein_coding chr12:109540690 chr12:109540689 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_7645 0 0 1 0 2 UNG chr12:109540732 5'GT 109540732 Upstream 44bp 7423 chr3 23996263 23996263 1 + T G UCEC 23996264 + 23996244 23996284 41 CAAGCAAATCGAGTGCACCTGGGATGACAAAAAGTCATAGT CAAGCAAATCGAGTGCACCGGGGATGACAAAAAGTCATAGT < 41bp 0.78706727848101 0.486665104149561 NA NA prediction 0.574134556962019 Functional Loss - NR1D2 ENSG00000174738 CDS Human protein_coding chr3:23996264 chr3:23996263 synonymous SNV . 0 20 hm7G_associated_SNPs_7646 0 0 1 0 1 NR1D2 chr3:23996294 5'GT 23996294 Upstream 32bp 7424 chr9 140146913 140146913 1 - A C LUSC 140146912 - 140146892 140146932 41 GCTCTGGAACCACAAAGTCTGCCATGCCCTGCGGCCACCGC GCTCTGGAACCACAAAGTCGGCCATGCCCTGCGGCCACCGC < 41bp 0.840740133477246 0.553674110050274 NA NA prediction 0.574132046853942 Functional Loss - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140146912 chr9:140146913 nonsynonymous SNV 0.777 3 20 hm7G_associated_SNPs_7647 0 0 1 0 2 STPG3-AS1 chr9:140146843 5'GT 140146843 Upstream 71bp 7425 chr9 140146913 140146913 1 - A C LUSC 140146912 - 140146892 140146932 41 GCTCTGGAACCACAAAGTCTGCCATGCCCTGCGGCCACCGC GCTCTGGAACCACAAAGTCGGCCATGCCCTGCGGCCACCGC < 41bp 0.840740133477246 0.553674110050274 NA NA prediction 0.574132046853942 Functional Loss - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140146912 chr9:140146913 nonsynonymous SNV 0.777 3 20 hm7G_associated_SNPs_7647 0 0 1 0 2 STPG3 chr9:140146958 3'AG 140146958 Downstream 46bp 7426 chr17 904289 904289 1 + T G OV 904290 + 904270 904310 41 CCATTGGTTGTGGAGGTTTTGCTGCTTTCTCTGCTGCGATT CCATTGGTTGTGGAGGTTTGGCTGCTTTCTCTGCTGCGATT < 41bp 0.806186302414332 0.519122651307425 NA NA prediction 0.574127302213813 Functional Loss - TIMM22 ENSG00000177370 CDS Human protein_coding chr17:904290 chr17:904289 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_7648 0 0 1 0 1 TIMM22 chr17:904252 3'AG 904252 Downstream 38bp 7427 chr10 44104090 44104090 1 + T G LUAD 44104091 + 44104071 44104111 41 ACATTTGGGGATGTGGCTGTGGCCTTTACCCGGATTGAGTG ACATTTGGGGATGTGGCTGGGGCCTTTACCCGGATTGAGTG < 41bp 0.786997444231038 0.465307236038974 NA NA prediction 0.573994888462076 Functional Loss - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44104091 chr10:44104090 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_7650 0 0 0 0 2 ZNF485 chr10:44104062 3'AG 44104062 Downstream 29bp 7428 chr10 44104090 44104090 1 + T G LUAD 44104091 + 44104071 44104111 41 ACATTTGGGGATGTGGCTGTGGCCTTTACCCGGATTGAGTG ACATTTGGGGATGTGGCTGGGGCCTTTACCCGGATTGAGTG < 41bp 0.786997444231038 0.465307236038974 NA NA prediction 0.573994888462076 Functional Loss - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44104091 chr10:44104090 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_7650 0 0 0 0 2 ZNF485 chr10:44104188 5'GT 44104188 Upstream 99bp 7429 chr15 98514363 98514363 1 + T G SKCM 98514364 + 98514344 98514384 41 CCGCTCTTTTTTTGCAGGTTGACCCACATCCTAGCGACGTA CCGCTCTTTTTTTGCAGGTGGACCCACATCCTAGCGACGTA < 41bp 0.789932357200195 0.502987997489939 NA NA prediction 0.573888719420511 Functional Loss - ARRDC4 ENSG00000140450 CDS Human protein_coding chr15:98514364 chr15:98514363 synonymous SNV . 0 20 hm7G_associated_SNPs_7652 0 0 1 0 1 ARRDC4 chr15:98514361 3'AG 98514361 Downstream 3bp 7430 chr20 32377368 32377368 1 + T G UCEC 32377369 + 32377349 32377389 41 TTCAACCGGCCGGACAAGCTGAAGGCCCACATCCTCTCCCA TTCAACCGGCCGGACAAGCGGAAGGCCCACATCCTCTCCCA < 41bp 0.786937768276492 0.455780413567737 NA NA prediction 0.573875536552983 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32377369 chr20:32377368 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7653 0 0 0 0 2 ZNF341 chr20:32377324 3'AG 32377324 Downstream 45bp 7431 chr20 32377368 32377368 1 + T G UCEC 32377369 + 32377349 32377389 41 TTCAACCGGCCGGACAAGCTGAAGGCCCACATCCTCTCCCA TTCAACCGGCCGGACAAGCGGAAGGCCCACATCCTCTCCCA < 41bp 0.786937768276492 0.455780413567737 NA NA prediction 0.573875536552983 Functional Loss - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32377369 chr20:32377368 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7653 0 0 0 0 2 ZNF341 chr20:32377394 5'GT 32377394 Upstream 27bp 7432 chr1 247608039 247608039 1 + T G LUAD 247608040 + 247608020 247608060 41 AGCCTGCGAAAGCTGAGCCTGGGCAACAATGACCTGGGCGA AGCCTGCGAAAGCTGAGCCGGGGCAACAATGACCTGGGCGA < 41bp 0.845740833377503 0.558892144461231 NA NA prediction 0.573697377832544 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247608040 chr1:247608039 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_7655 0 0 0 0 2 NLRP3 chr1:247607953 3'AG 247607953 Downstream 87bp 7433 chr1 247608039 247608039 1 + T G LUAD 247608040 + 247608020 247608060 41 AGCCTGCGAAAGCTGAGCCTGGGCAACAATGACCTGGGCGA AGCCTGCGAAAGCTGAGCCGGGGCAACAATGACCTGGGCGA < 41bp 0.845740833377503 0.558892144461231 NA NA prediction 0.573697377832544 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247608040 chr1:247608039 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_7655 0 0 0 0 2 NLRP3 chr1:247608123 5'GT 247608123 Upstream 85bp 7434 chr20 62320973 62320973 1 + T G SARC 62320974 + 62320954 62320994 41 ATGCAGTTCCTGGATGAGATGAAGGGCCAGGGTGGGGCTGG ATGCAGTTCCTGGATGAGAGGAAGGGCCAGGGTGGGGCTGG < 41bp 0.84393179550554 0.557083332730969 NA NA prediction 0.573696925549142 Functional Loss - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62320974 chr20:62320973 nonsynonymous SNV 0.302 3 20 hm7G_associated_SNPs_7656 0 0 1 0 1 RTEL1 chr20:62321001 5'GT 62321001 Upstream 29bp 7435 chr15 38990412 38990412 1 + T G COAD 38990413 + 38990393 38990433 41 GAGCTCAGGGATTGGAATCTGGGAGAAGATGCTTCCCTTCT GAGCTCAGGGATTGGAATCGGGGAGAAGATGCTTCCCTTCT < 41bp 0.786845469257079 0.498536728663722 NA NA prediction 0.573690938514158 Functional Loss - C15orf53 ENSG00000175779 CDS Human protein_coding chr15:38990413 chr15:38990412 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7657 0 0 0 0 1 C15orf53 chr15:38990339 3'AG 38990339 Downstream 74bp 7436 chr11 32608572 32608572 1 + T G OV 32608573 + 32608553 32608593 41 AACAGGCTGCTGAGCTTCGTGCTTATCTGAAATCTAAAGGA AACAGGCTGCTGAGCTTCGGGCTTATCTGAAATCTAAAGGA < 41bp 0.832638183284868 0.54589594527367 NA NA prediction 0.573484476022396 Functional Loss - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32608573 chr11:32608572 synonymous SNV . 0 20 hm7G_associated_SNPs_7659 0 0 1 0 1 EIF3M chr11:32608558 3'AG 32608558 Downstream 15bp 7437 chr15 42702005 42702005 1 + T G KIRC 42702006 + 42701986 42702026 41 ACATGGAGATCTGTGCAGATGAGCTCAAGAAGGTCCTTAAC ACATGGAGATCTGTGCAGAGGAGCTCAAGAAGGTCCTTAAC < 41bp 0.827355446744371 0.540616956469794 NA NA prediction 0.573476980549154 Functional Loss - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42702006 chr15:42702005 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_7660 0 0 0 0 2 CAPN3 chr15:42701985 3'AG 42701985 Downstream 21bp 7438 chr15 42702005 42702005 1 + T G KIRC 42702006 + 42701986 42702026 41 ACATGGAGATCTGTGCAGATGAGCTCAAGAAGGTCCTTAAC ACATGGAGATCTGTGCAGAGGAGCTCAAGAAGGTCCTTAAC < 41bp 0.827355446744371 0.540616956469794 NA NA prediction 0.573476980549154 Functional Loss - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42702006 chr15:42702005 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_7660 0 0 0 0 2 CAPN3 chr15:42702042 5'GT 42702042 Upstream 38bp 7439 chr21 30699657 30699657 1 + T G rs140585235 30699658 + 30699638 30699678 41 TTAGCTTGGGAGACGACTCTGAGACGGACACCGAAGGAGAC TTAGCTTGGGAGACGACTCGGAGACGGACACCGAAGGAGAC < 41bp 0.808683434368845 0.521982386052246 NA NA prediction 0.573402096633199 Functional Loss - BACH1 ENSG00000156273 CDS Human protein_coding chr21:30699658 chr21:30699657 synonymous SNV . 0 20 hm7G_associated_SNPs_7662 0 0 1 0 1 BACH1 chr21:30699714 5'GT 30699714 Upstream 58bp 7440 chr9 102713518 102713518 1 + T G LUSC 102713519 + 102713499 102713539 41 TTAAGAAGCAATTTAATGATGAAGAAACTTTGCTACAGCCT TTAAGAAGCAATTTAATGAGGAAGAAACTTTGCTACAGCCT < 41bp 0.814241244043493 0.527543587936959 NA NA prediction 0.573395312213067 Functional Loss - STX17 ENSG00000136874 CDS Human protein_coding chr9:102713519 chr9:102713518 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_7663 0 0 0 0 1 STX17 chr9:102713567 5'GT 102713567 Upstream 50bp 7441 chr10 26359273 26359273 1 + T G SKCM 26359274 + 26359254 26359294 41 TTATTTCTGGAGAAAGTGGTGCTGGAAAGACTGAAAATGCT TTATTTCTGGAGAAAGTGGGGCTGGAAAGACTGAAAATGCT < 41bp 0.806125699794839 0.519482932118756 NA NA prediction 0.573285535352168 Functional Loss - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26359274 chr10:26359273 synonymous SNV . 0 20 hm7G_associated_SNPs_7664 0 0 0 0 2 MYO3A chr10:26359247 3'AG 26359247 Downstream 27bp 7442 chr10 26359273 26359273 1 + T G SKCM 26359274 + 26359254 26359294 41 TTATTTCTGGAGAAAGTGGTGCTGGAAAGACTGAAAATGCT TTATTTCTGGAGAAAGTGGGGCTGGAAAGACTGAAAATGCT < 41bp 0.806125699794839 0.519482932118756 NA NA prediction 0.573285535352168 Functional Loss - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26359274 chr10:26359273 synonymous SNV . 0 20 hm7G_associated_SNPs_7664 0 0 0 0 2 MYO3A chr10:26359330 5'GT 26359330 Upstream 58bp 7443 chr2 102992386 102992386 1 + T G LUAD 102992387 + 102992367 102992407 41 AACTGTAAAAAGCTACTACTGGAGAACAATAAAAACCCAAC AACTGTAAAAAGCTACTACGGGAGAACAATAAAAACCCAAC < 41bp 0.786508988526201 0.490417500443319 NA NA prediction 0.573017977052403 Functional Loss - IL18R1 ENSG00000115604 CDS Human protein_coding chr2:102992387 chr2:102992386 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7666 0 0 0 0 1 IL18R1 chr2:102992367 3'AG 102992367 Downstream 20bp 7444 chr15 40494889 40494889 1 + T G rs559358302 40494890 + 40494870 40494910 41 ATGAAGATGTGTCTCCAGATGTTTGTGTAAGGAGCAGTATC ATGAAGATGTGTCTCCAGAGGTTTGTGTAAGGAGCAGTATC < 41bp 0.811541822203441 0.525059635202386 NA NA prediction 0.572964374002108 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40494890 chr15:40494889 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_7667 0 0 1 0 2 BUB1B chr15:40494790 3'AG 40494790 Downstream 100bp 7445 chr15 40494889 40494889 1 + T G rs559358302 40494890 + 40494870 40494910 41 ATGAAGATGTGTCTCCAGATGTTTGTGTAAGGAGCAGTATC ATGAAGATGTGTCTCCAGAGGTTTGTGTAAGGAGCAGTATC < 41bp 0.811541822203441 0.525059635202386 NA NA prediction 0.572964374002108 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40494890 chr15:40494889 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_7667 0 0 1 0 2 BUB1B chr15:40494895 5'GT 40494895 Upstream 7bp 7446 chr5 133887758 133887758 1 + T G COAD 133887759 + 133887739 133887779 41 CAGGTTTTCCGGACAGACTTGATCACAGCCATGAAGATCCC CAGGTTTTCCGGACAGACTGGATCACAGCCATGAAGATCCC < 41bp 0.786394033761937 0.459171222533157 NA NA prediction 0.572788067523873 Functional Loss - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133887759 chr5:133887758 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_7668 0 0 1 0 1 JADE2 chr5:133887742 3'AG 133887742 Downstream 17bp 7447 chr20 55942111 55942111 1 + T G OV 55942112 + 55942092 55942132 41 TGATGGTTTTGCAACTCCCTGAAAGGTGTTACTGTGCTGAC TGATGGTTTTGCAACTCCCGGAAAGGTGTTACTGTGCTGAC < 41bp 0.827751832891933 0.541377784548231 NA NA prediction 0.572748096687404 Functional Loss - RAE1 ENSG00000101146 CDS Human protein_coding chr20:55942112 chr20:55942111 synonymous SNV . 0 20 hm7G_associated_SNPs_7669 0 0 1 0 2 RAE1 chr20:55942064 3'AG 55942064 Downstream 48bp 7448 chr20 55942111 55942111 1 + T G OV 55942112 + 55942092 55942132 41 TGATGGTTTTGCAACTCCCTGAAAGGTGTTACTGTGCTGAC TGATGGTTTTGCAACTCCCGGAAAGGTGTTACTGTGCTGAC < 41bp 0.827751832891933 0.541377784548231 NA NA prediction 0.572748096687404 Functional Loss - RAE1 ENSG00000101146 CDS Human protein_coding chr20:55942112 chr20:55942111 synonymous SNV . 0 20 hm7G_associated_SNPs_7669 0 0 1 0 2 RAE1 chr20:55942135 5'GT 55942135 Upstream 25bp 7449 chr6 110081503 110081503 1 + T G COAD 110081504 + 110081484 110081524 41 TGAGTGAAGAACTTGTTGCTGCTGTGACCTATCTCAACCAA TGAGTGAAGAACTTGTTGCGGCTGTGACCTATCTCAACCAA < 41bp 0.786349640487328 0.468715394182213 NA NA prediction 0.572699280974656 Functional Loss - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110081504 chr6:110081503 synonymous SNV . 0 20 hm7G_associated_SNPs_7670 0 0 1 0 2 FIG4 chr6:110081453 3'AG 110081453 Downstream 51bp 7450 chr6 110081503 110081503 1 + T G COAD 110081504 + 110081484 110081524 41 TGAGTGAAGAACTTGTTGCTGCTGTGACCTATCTCAACCAA TGAGTGAAGAACTTGTTGCGGCTGTGACCTATCTCAACCAA < 41bp 0.786349640487328 0.468715394182213 NA NA prediction 0.572699280974656 Functional Loss - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110081504 chr6:110081503 synonymous SNV . 0 20 hm7G_associated_SNPs_7670 0 0 1 0 2 FIG4 chr6:110081586 5'GT 110081586 Upstream 84bp 7451 chr6 80750407 80750407 1 + T G LUAD 80750408 + 80750388 80750428 41 AATTCTCCTAACTCCATTTTGAAAGCTGCTAAAGTAAGTAT AATTCTCCTAACTCCATTTGGAAAGCTGCTAAAGTAAGTAT < 41bp 0.799272322101174 0.512985918511034 NA NA prediction 0.572572807180279 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80750408 chr6:80750407 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_7672 0 0 1 0 2 TTK chr6:80750323 3'AG 80750323 Downstream 85bp 7452 chr6 80750407 80750407 1 + T G LUAD 80750408 + 80750388 80750428 41 AATTCTCCTAACTCCATTTTGAAAGCTGCTAAAGTAAGTAT AATTCTCCTAACTCCATTTGGAAAGCTGCTAAAGTAAGTAT < 41bp 0.799272322101174 0.512985918511034 NA NA prediction 0.572572807180279 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80750408 chr6:80750407 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_7672 0 0 1 0 2 TTK chr6:80750420 5'GT 80750420 Upstream 14bp 7453 chr12 70189116 70189116 1 + T G COAD 70189117 + 70189097 70189137 41 ACAGCCAATTGTAAAAGACTGCAAAGAGGTAACTCATCAAG ACAGCCAATTGTAAAAGACGGCAAAGAGGTAACTCATCAAG < 41bp 0.823592853803386 0.537320191422077 NA NA prediction 0.572545324762619 Functional Loss - RAB3IP ENSG00000127328 CDS Human protein_coding chr12:70189117 chr12:70189116 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_7673 0 0 1 0 1 RAB3IP chr12:70189124 5'GT 70189124 Upstream 9bp 7454 chr1 14149668 14149668 1 + T G rs77717345 14149669 + 14149649 14149689 41 CTCAGCACCTGAAGTGACCTGGAATCAGTGAAGCCAAAGGG CTCAGCACCTGAAGTGACCGGGAATCAGTGAAGCCAAAGGG < 41bp 0.786114901284581 0.482753724687924 NA NA prediction 0.572229802569163 Functional Loss - PRDM2 ENSG00000116731 CDS Human protein_coding chr1:14149669 chr1:14149668 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7675 0 0 1 0 1 PRDM2 chr1:14149654 3'AG 14149654 Downstream 15bp 7455 chr7 23164376 23164376 1 + T G LUSC 23164377 + 23164357 23164397 41 CCTGATATTATTGAACAACTGGTGGAATTTGCTTATACTGC CCTGATATTATTGAACAACGGGTGGAATTTGCTTATACTGC < 41bp 0.797934462478191 0.511821998324428 NA NA prediction 0.572224928307526 Functional Loss - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23164377 chr7:23164376 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7676 0 0 1 0 2 KLHL7 chr7:23164307 3'AG 23164307 Downstream 70bp 7456 chr7 23164376 23164376 1 + T G LUSC 23164377 + 23164357 23164397 41 CCTGATATTATTGAACAACTGGTGGAATTTGCTTATACTGC CCTGATATTATTGAACAACGGGTGGAATTTGCTTATACTGC < 41bp 0.797934462478191 0.511821998324428 NA NA prediction 0.572224928307526 Functional Loss - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23164377 chr7:23164376 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7676 0 0 1 0 2 KLHL7 chr7:23164400 5'GT 23164400 Upstream 25bp 7457 chr8 68062151 68062151 1 + T G LUAD 68062152 + 68062132 68062172 41 ATGCTGAGAACCTAGAAGATGCTGCAAATAAAAGCTCAGGT ATGCTGAGAACCTAGAAGAGGCTGCAAATAAAAGCTCAGGT < 41bp 0.791439351123371 0.505338828771101 NA NA prediction 0.572201044704539 Functional Loss - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68062152 chr8:68062151 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7677 0 0 1 2 1 CSPP1 chr8:68062170 5'GT 68062170 Upstream 20bp 7458 chr1 46871982 46871982 1 + T G COAD 46871983 + 46871963 46872003 41 CTGTGCCTGCGAGCCCTGCTGTGTGAGGACATGTTCCGCTT CTGTGCCTGCGAGCCCTGCGGTGTGAGGACATGTTCCGCTT < 41bp 0.786081900759144 0.464909863692062 NA NA prediction 0.572163801518288 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871983 chr1:46871982 nonsynonymous SNV 0.971 1 20 hm7G_associated_SNPs_7678 0 0 0 0 2 FAAH chr1:46871916 3'AG 46871916 Downstream 67bp 7459 chr1 46871982 46871982 1 + T G COAD 46871983 + 46871963 46872003 41 CTGTGCCTGCGAGCCCTGCTGTGTGAGGACATGTTCCGCTT CTGTGCCTGCGAGCCCTGCGGTGTGAGGACATGTTCCGCTT < 41bp 0.786081900759144 0.464909863692062 NA NA prediction 0.572163801518288 Functional Loss - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871983 chr1:46871982 nonsynonymous SNV 0.971 1 20 hm7G_associated_SNPs_7678 0 0 0 0 2 FAAH chr1:46872040 5'GT 46872040 Upstream 59bp 7460 chr18 43405725 43405725 1 + T G rs139939061 43405726 + 43405706 43405746 41 ATCTGGCTGCTGGCCTGCTTGGCGTGGGTTCTCCCGACAGG ATCTGGCTGCTGGCCTGCTGGGCGTGGGTTCTCCCGACAGG < 41bp 0.786059154917414 0.476589962165839 NA NA prediction 0.572118309834827 Functional Loss - SIGLEC15 ENSG00000197046 CDS Human protein_coding chr18:43405726 chr18:43405725 nonsynonymous SNV 0.594 2 20 hm7G_associated_SNPs_7680 0 0 0 0 1 SIGLEC15 chr18:43405745 5'GT 43405745 Upstream 21bp 7461 chr16 4921188 4921188 1 + T G ESCA 4921189 + 4921169 4921209 41 CAGGTGGTGAAGATCAAACTGGAGAGCCAGGACCTGGAGAG CAGGTGGTGAAGATCAAACGGGAGAGCCAGGACCTGGAGAG < 41bp 0.85782722773605 0.571839448363894 NA NA prediction 0.571975558744311 Functional Loss - UBN1 ENSG00000118900 CDS Human protein_coding chr16:4921189 chr16:4921188 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_7681 0 0 1 0 1 UBN1 chr16:4921156 3'AG 4921156 Downstream 33bp 7462 chr19 15164333 15164333 1 + T G SKCM 15164334 + 15164314 15164354 41 GCCCGCCTGGCCCTAATACTGTGTGTCACCAAAGCCCGGGA GCCCGCCTGGCCCTAATACGGTGTGTCACCAAAGCCCGGGA < 41bp 0.785849562205183 0.469515517704513 NA NA prediction 0.571699124410366 Functional Loss - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164334 chr19:15164333 nonsynonymous SNV 0.942 4 20 hm7G_associated_SNPs_7683 0 0 0 0 1 CASP14 chr19:15164293 3'AG 15164293 Downstream 41bp 7463 chrX 118586896 118586896 1 + T G UCEC 118586897 + 118586877 118586917 41 GAATCTGTCTTTATCAAAATGGTTACATTCTGTCTCCACTG GAATCTGTCTTTATCAAAAGGGTTACATTCTGTCTCCACTG < 41bp 0.78577870376811 0.4952634273358 NA NA prediction 0.57155740753622 Functional Loss - SLC25A43 ENSG00000077713 CDS Human protein_coding chrX:118586897 chrX:118586896 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7685 0 0 0 0 1 SLC25A43 chrX:118586828 3'AG 118586828 Downstream 69bp 7464 chr9 35675908 35675908 1 + T G LUAD 35675909 + 35675889 35675929 41 CCGCTCCCAGAACTGCGCCTGCGCAACAATGGCCACAGTGG CCGCTCCCAGAACTGCGCCGGCGCAACAATGGCCACAGTGG < 41bp 0.853831197258133 0.568064672765162 NA NA prediction 0.571533048985942 Functional Loss - CA9 ENSG00000107159 CDS Human protein_coding chr9:35675909 chr9:35675908 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_7686 0 0 0 0 1 CA9 chr9:35675928 5'GT 35675928 Upstream 21bp 7465 chr9 101602364 101602364 1 + T G STAD 101602365 + 101602345 101602385 41 TCAAGTGGTTCTTGGAGACTGTGTATCCAGAACTGCATGTG TCAAGTGGTTCTTGGAGACGGTGTATCCAGAACTGCATGTG < 41bp 0.818908291347599 0.533157146324194 NA NA prediction 0.57150229004681 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101602365 chr9:101602364 synonymous SNV . 0 20 hm7G_associated_SNPs_7688 0 0 1 0 2 GALNT12 chr9:101602284 3'AG 101602284 Downstream 81bp 7466 chr9 101602364 101602364 1 + T G STAD 101602365 + 101602345 101602385 41 TCAAGTGGTTCTTGGAGACTGTGTATCCAGAACTGCATGTG TCAAGTGGTTCTTGGAGACGGTGTATCCAGAACTGCATGTG < 41bp 0.818908291347599 0.533157146324194 NA NA prediction 0.57150229004681 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101602365 chr9:101602364 synonymous SNV . 0 20 hm7G_associated_SNPs_7688 0 0 1 0 2 GALNT12 chr9:101602415 5'GT 101602415 Upstream 52bp 7467 chr1 236972027 236972027 1 + T G ESCA 236972028 + 236972008 236972048 41 ACCGGATGAACATGTGCTCTGCAGGAGTGGCCAGAAAAGCT ACCGGATGAACATGTGCTCGGCAGGAGTGGCCAGAAAAGCT < 41bp 0.846214743760902 0.560473426363517 NA NA prediction 0.571482634794769 Functional Loss - MTR ENSG00000116984 CDS Human protein_coding chr1:236972028 chr1:236972027 synonymous SNV . 0 20 hm7G_associated_SNPs_7690 0 0 1 1 2 MTR chr1:236972004 3'AG 236972004 Downstream 24bp 7468 chr1 236972027 236972027 1 + T G ESCA 236972028 + 236972008 236972048 41 ACCGGATGAACATGTGCTCTGCAGGAGTGGCCAGAAAAGCT ACCGGATGAACATGTGCTCGGCAGGAGTGGCCAGAAAAGCT < 41bp 0.846214743760902 0.560473426363517 NA NA prediction 0.571482634794769 Functional Loss - MTR ENSG00000116984 CDS Human protein_coding chr1:236972028 chr1:236972027 synonymous SNV . 0 20 hm7G_associated_SNPs_7690 0 0 1 1 2 MTR chr1:236972073 5'GT 236972073 Upstream 47bp 7469 chr14 24641972 24641972 1 + T G COAD 24641973 + 24641953 24641993 41 AAGCGCGAATACCTGAGGGTGAATGTGGTGAAAACCTGGTA AAGCGCGAATACCTGAGGGGGAATGTGGTGAAAACCTGGTA < 41bp 0.852227092523115 0.566638386201047 NA NA prediction 0.571177412644137 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24641973 chr14:24641972 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_7691 0 0 0 0 2 REC8 chr14:24641922 3'AG 24641922 Downstream 51bp 7470 chr14 24641972 24641972 1 + T G COAD 24641973 + 24641953 24641993 41 AAGCGCGAATACCTGAGGGTGAATGTGGTGAAAACCTGGTA AAGCGCGAATACCTGAGGGGGAATGTGGTGAAAACCTGGTA < 41bp 0.852227092523115 0.566638386201047 NA NA prediction 0.571177412644137 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24641973 chr14:24641972 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_7691 0 0 0 0 2 REC8 chr14:24641990 5'GT 24641990 Upstream 19bp 7471 chr13 25905548 25905548 1 + T G LUSC 25905549 + 25905529 25905569 41 TGTTCTTGGGAGATGCTGTTGATGTGTTTGAAACAAGGCGA TGTTCTTGGGAGATGCTGTGGATGTGTTTGAAACAAGGCGA < 41bp 0.78725690139901 0.50180768296889 NA NA prediction 0.57089843686024 Functional Loss - NUP58 ENSG00000139496 CDS Human protein_coding chr13:25905549 chr13:25905548 synonymous SNV . 0 20 hm7G_associated_SNPs_7695 0 0 1 0 1 NUP58 chr13:25905495 3'AG 25905495 Downstream 54bp 7472 chr3 32483360 32483360 1 + T G HNSC 32483361 + 32483341 32483381 41 CTGATTGCCTTCATCTGTGTGCGGAGCTCCCTGTGGACCAA CTGATTGCCTTCATCTGTGGGCGGAGCTCCCTGTGGACCAA < 41bp 0.848113465252965 0.56268085481562 NA NA prediction 0.570865220874691 Functional Loss - CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483361 chr3:32483360 nonsynonymous SNV 0.154 3 20 hm7G_associated_SNPs_7696 0 0 1 0 1 CMTM7 chr3:32483332 3'AG 32483332 Downstream 29bp 7473 chr5 5466574 5466574 1 + T G LUSC 5466575 + 5466555 5466595 41 TGTCGGCAACTCGGAGACTTGGAAAGAGCTCGTTTGTTTTG TGTCGGCAACTCGGAGACTGGGAAAGAGCTCGTTTGTTTTG < 41bp 0.785404276522456 0.470747168053009 NA NA prediction 0.570808553044912 Functional Loss - ICE1 ENSG00000164151 CDS Human protein_coding chr5:5466575 chr5:5466574 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7698 0 0 1 0 1 ICE1 chr5:5466615 5'GT 5466615 Upstream 42bp 7474 chr20 31647706 31647706 1 + T G SARC 31647707 + 31647687 31647727 41 TTTCTTGCAGCCCCCTTGGTGGCCTTCTGCAGCTGGCTGCG TTTCTTGCAGCCCCCTTGGGGGCCTTCTGCAGCTGGCTGCG < 41bp 0.847954150039301 0.562625719670856 NA NA prediction 0.57065686073689 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31647707 chr20:31647706 synonymous SNV . 0 20 hm7G_associated_SNPs_7701 0 0 0 0 1 BPIFB3 chr20:31647697 3'AG 31647697 Downstream 10bp 7475 chr8 31007893 31007893 1 + T G STAD 31007894 + 31007874 31007914 41 ACGTAAAAAGGATTGATGGTGTTTCTGAAGGCAAAGCTGCC ACGTAAAAAGGATTGATGGGGTTTCTGAAGGCAAAGCTGCC < 41bp 0.822628542938229 0.537377346128834 NA NA prediction 0.570502393618791 Functional Loss - WRN ENSG00000165392 CDS Human protein_coding chr8:31007894 chr8:31007893 synonymous SNV . 0 20 hm7G_associated_SNPs_7703 0 0 1 0 2 WRN chr8:31007857 3'AG 31007857 Downstream 37bp 7476 chr8 31007893 31007893 1 + T G STAD 31007894 + 31007874 31007914 41 ACGTAAAAAGGATTGATGGTGTTTCTGAAGGCAAAGCTGCC ACGTAAAAAGGATTGATGGGGTTTCTGAAGGCAAAGCTGCC < 41bp 0.822628542938229 0.537377346128834 NA NA prediction 0.570502393618791 Functional Loss - WRN ENSG00000165392 CDS Human protein_coding chr8:31007894 chr8:31007893 synonymous SNV . 0 20 hm7G_associated_SNPs_7703 0 0 1 0 2 WRN chr8:31007971 5'GT 31007971 Upstream 79bp 7477 chr6 43401070 43401070 1 + T G UCEC 43401071 + 43401051 43401091 41 ATGGCCAGCAACCAGGAAATGCTACAGCACAAGGATGCGCG ATGGCCAGCAACCAGGAAAGGCTACAGCACAAGGATGCGCG < 41bp 0.837384784622441 0.552144193549767 NA NA prediction 0.570481182145348 Functional Loss - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43401071 chr6:43401070 nonsynonymous SNV 0.983 5 20 hm7G_associated_SNPs_7704 0 0 1 0 1 ABCC10 chr6:43401098 5'GT 43401098 Upstream 29bp 7478 chr1 241959597 241959597 1 + T G rs115851520 241959598 + 241959578 241959618 41 TAAGATTTCTTCCACTGATTGGCGTAGAAGCCCAAAAGGAC TAAGATTTCTTCCACTGATGGGCGTAGAAGCCCAAAAGGAC < 41bp 0.822394772162626 0.537193779335065 NA NA prediction 0.570401985655123 Functional Loss - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241959598 chr1:241959597 nonsynonymous SNV 0.369 4 20 hm7G_associated_SNPs_7705 0 0 0 0 1 WDR64 chr1:241959559 3'AG 241959559 Downstream 39bp 7479 chr5 179007951 179007951 1 + T G rs6879322 179007952 + 179007932 179007972 41 ATGCTCCTTTTAAAAGGCATGAAAGAATTACTGATGTCCTT ATGCTCCTTTTAAAAGGCAGGAAAGAATTACTGATGTCCTT < 41bp 0.785175030823512 0.488023063967635 NA NA prediction 0.570350061647025 Functional Loss - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179007952 chr5:179007951 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_7706 0 0 1 0 2 RUFY1 chr5:179007948 3'AG 179007948 Downstream 4bp 7480 chr5 179007951 179007951 1 + T G rs6879322 179007952 + 179007932 179007972 41 ATGCTCCTTTTAAAAGGCATGAAAGAATTACTGATGTCCTT ATGCTCCTTTTAAAAGGCAGGAAAGAATTACTGATGTCCTT < 41bp 0.785175030823512 0.488023063967635 NA NA prediction 0.570350061647025 Functional Loss - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179007952 chr5:179007951 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_7706 0 0 1 0 2 RUFY1 chr5:179008013 5'GT 179008013 Upstream 63bp 7481 chr1 203098275 203098275 1 + T G rs2228079 203098276 + 203098256 203098296 41 TGGCCCTGCTGGCAATTGCTGTGGACCGCTACCTCCGGGTC TGGCCCTGCTGGCAATTGCGGTGGACCGCTACCTCCGGGTC < 41bp 0.78515982133516 0.468601246818993 NA NA prediction 0.57031964267032 Functional Loss - ADORA1 ENSG00000163485 CDS Human protein_coding chr1:203098276 chr1:203098275 synonymous SNV . 0 20 hm7G_associated_SNPs_7707 0 0 0 0 1 ADORA1 chr1:203098310 5'GT 203098310 Upstream 36bp 7482 chr12 67705474 67705474 1 + T G LUSC 67705475 + 67705455 67705495 41 CTTTTTTATTCCTAATAGATGCTGACATTTTTAATGTTGGT CTTTTTTATTCCTAATAGAGGCTGACATTTTTAATGTTGGT < 41bp 0.795845005037555 0.510740231578544 NA NA prediction 0.57020954691802 Functional Loss - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67705475 chr12:67705474 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_7708 0 0 1 0 1 CAND1 chr12:67705473 3'AG 67705473 Downstream 2bp 7483 chr19 4354354 4354354 1 + T G CESC 4354355 + 4354335 4354375 41 TGGTGGAAGTAACATCCTTTGCAGCCATCAACAAGTTCCAG TGGTGGAAGTAACATCCTTGGCAGCCATCAACAAGTTCCAG < 41bp 0.78503753303024 0.450880041321424 NA NA prediction 0.570075066060481 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4354355 chr19:4354354 nonsynonymous SNV 0.922 3 20 hm7G_associated_SNPs_7709 0 0 1 1 2 MPND chr19:4354321 3'AG 4354321 Downstream 34bp 7484 chr19 4354354 4354354 1 + T G CESC 4354355 + 4354335 4354375 41 TGGTGGAAGTAACATCCTTTGCAGCCATCAACAAGTTCCAG TGGTGGAAGTAACATCCTTGGCAGCCATCAACAAGTTCCAG < 41bp 0.78503753303024 0.450880041321424 NA NA prediction 0.570075066060481 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4354355 chr19:4354354 nonsynonymous SNV 0.922 3 20 hm7G_associated_SNPs_7709 0 0 1 1 2 MPND chr19:4354417 5'GT 4354417 Upstream 64bp 7485 chr7 154738093 154738093 1 + T G LUSC 154738094 + 154738074 154738114 41 TGATTCATAGTCCAGCGTTTGAGTGAGCACTCCAGTCAGAA TGATTCATAGTCCAGCGTTGGAGTGAGCACTCCAGTCAGAA < 41bp 0.81462995631742 0.529655483687207 NA NA prediction 0.569948945260426 Functional Loss - PAXIP1 ENSG00000157212 CDS Human antisense chr7:154738094 chr7:154738093 nonsynonymous SNV 0.801 3 20 hm7G_associated_SNPs_7711 0 0 0 1 1 PAXIP1-AS2 chr7:154738070 3'AG 154738070 Downstream 24bp 7486 chr2 178080366 178080366 1 + T G UCEC 178080367 + 178080347 178080387 41 ACGAGAACATTTTGAGAAATGGGGCACACTCACAGATTGTG ACGAGAACATTTTGAGAAAGGGGGCACACTCACAGATTGTG < 41bp 0.784965419722666 0.481012905528868 NA NA prediction 0.569930839445333 Functional Loss - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178080367 chr2:178080366 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7712 0 0 1 0 2 HNRNPA3 chr2:178080267 3'AG 178080267 Downstream 100bp 7487 chr2 178080366 178080366 1 + T G UCEC 178080367 + 178080347 178080387 41 ACGAGAACATTTTGAGAAATGGGGCACACTCACAGATTGTG ACGAGAACATTTTGAGAAAGGGGGCACACTCACAGATTGTG < 41bp 0.784965419722666 0.481012905528868 NA NA prediction 0.569930839445333 Functional Loss - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178080367 chr2:178080366 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7712 0 0 1 0 2 HNRNPA3 chr2:178080389 5'GT 178080389 Upstream 24bp 7488 chr16 66975065 66975065 1 + T G UCEC 66975066 + 66975046 66975086 41 CCTGTGACCAAGTTGACTCTGAGGCCCTGGTGGGCTGCCTG CCTGTGACCAAGTTGACTCGGAGGCCCTGGTGGGCTGCCTG < 41bp 0.861953974372341 0.57701977761707 NA NA prediction 0.569868393510542 Functional Loss - CES2 ENSG00000172831 CDS Human protein_coding chr16:66975066 chr16:66975065 synonymous SNV . 0 20 hm7G_associated_SNPs_7713 0 0 1 0 2 CES2 chr16:66975027 3'AG 66975027 Downstream 39bp 7489 chr16 66975065 66975065 1 + T G UCEC 66975066 + 66975046 66975086 41 CCTGTGACCAAGTTGACTCTGAGGCCCTGGTGGGCTGCCTG CCTGTGACCAAGTTGACTCGGAGGCCCTGGTGGGCTGCCTG < 41bp 0.861953974372341 0.57701977761707 NA NA prediction 0.569868393510542 Functional Loss - CES2 ENSG00000172831 CDS Human protein_coding chr16:66975066 chr16:66975065 synonymous SNV . 0 20 hm7G_associated_SNPs_7713 0 0 1 0 2 CES2 chr16:66975125 5'GT 66975125 Upstream 61bp 7490 chr10 26802478 26802478 1 + T G LUSC 26802479 + 26802459 26802499 41 TTTCATCAGAGAGGTTTTTTGAAGACCATGAAAATGTTGTT TTTCATCAGAGAGGTTTTTGGAAGACCATGAAAATGTTGTT < 41bp 0.823517525826539 0.538621721011164 NA NA prediction 0.569791609630751 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26802479 chr10:26802478 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7714 0 0 0 0 1 APBB1IP chr10:26802468 3'AG 26802468 Downstream 11bp 7491 chr2 99812127 99812127 1 + T G KIRC 99812128 + 99812108 99812148 41 TGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTGGAGC TGGGGAGTTAGTAGTGCAGGGGCATCTGAAACCTGTGGAGC < 41bp 0.826679437783297 0.541804544805628 NA NA prediction 0.569749785955338 Functional Loss - MRPL30 ENSG00000185414;ENSG00000241962 CDS Human other chr2:99812128 chr2:99812127 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_7716 0 0 1 0 2 MRPL30 chr2:99812036 3'AG 99812036 Downstream 92bp 7492 chr2 99812127 99812127 1 + T G KIRC 99812128 + 99812108 99812148 41 TGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTGGAGC TGGGGAGTTAGTAGTGCAGGGGCATCTGAAACCTGTGGAGC < 41bp 0.826679437783297 0.541804544805628 NA NA prediction 0.569749785955338 Functional Loss - MRPL30 ENSG00000185414;ENSG00000241962 CDS Human other chr2:99812128 chr2:99812127 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_7716 0 0 1 0 2 MRPL30 chr2:99812219 5'GT 99812219 Upstream 93bp 7493 chrX 135572573 135572573 1 + T G TGCT 135572574 + 135572554 135572594 41 ATCTCTGTCTACTATTCCTTGATTGCTAGGACCCTTTACAA ATCTCTGTCTACTATTCCTGGATTGCTAGGACCCTTTACAA < 41bp 0.826829315863388 0.541998590126917 NA NA prediction 0.569661451472941 Functional Loss - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135572574 chrX:135572573 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7718 0 0 0 0 1 BRS3 chrX:135572643 5'GT 135572643 Upstream 71bp 7494 chr2 191818320 191818320 1 + T G COAD 191818321 + 191818301 191818341 41 TGATAAATCTTTTGTTTGCTGCATATACTGGAGATGTGTCT TGATAAATCTTTTGTTTGCGGCATATACTGGAGATGTGTCT < 41bp 0.808100289717243 0.523281449389093 NA NA prediction 0.569637680656299 Functional Loss - GLS ENSG00000115419 CDS Human protein_coding chr2:191818321 chr2:191818320 synonymous SNV . 0 20 hm7G_associated_SNPs_7719 0 0 0 0 2 GLS chr2:191818291 3'AG 191818291 Downstream 30bp 7495 chr2 191818320 191818320 1 + T G COAD 191818321 + 191818301 191818341 41 TGATAAATCTTTTGTTTGCTGCATATACTGGAGATGTGTCT TGATAAATCTTTTGTTTGCGGCATATACTGGAGATGTGTCT < 41bp 0.808100289717243 0.523281449389093 NA NA prediction 0.569637680656299 Functional Loss - GLS ENSG00000115419 CDS Human protein_coding chr2:191818321 chr2:191818320 synonymous SNV . 0 20 hm7G_associated_SNPs_7719 0 0 0 0 2 GLS chr2:191818352 5'GT 191818352 Upstream 33bp 7496 chr9 131479099 131479099 1 + T G SKCM 131479100 + 131479080 131479120 41 CCTGCTCTCCCTCCTTGCCTGCTTCCAGACCTCCAGCCATG CCTGCTCTCCCTCCTTGCCGGCTTCCAGACCTCCAGCCATG < 41bp 0.784793140990351 0.467485520260708 NA NA prediction 0.569586281980701 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131479100 chr9:131479099 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_7720 0 0 1 0 1 PKN3 chr9:131479026 3'AG 131479026 Downstream 74bp 7497 chr2 106471537 106471537 1 + T G UCEC 106471538 + 106471518 106471558 41 AGATGACAGAAGAAGTTATTGTGATAGCCAAGTGGGACTAC AGATGACAGAAGAAGTTATGGTGATAGCCAAGTGGGACTAC < 41bp 0.838884792114203 0.55414425809466 NA NA prediction 0.569481068039086 Functional Loss - NCK2 ENSG00000071051 CDS Human antisense chr2:106471538 chr2:106471537 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_7721 0 0 1 0 1 NCK2 chr2:106471504 3'AG 106471504 Downstream 34bp 7498 chr3 183823994 183823994 1 + T G BRCA 183823995 + 183823975 183824015 41 ATCACCCACCTGCTGCACGTGGCCACCACCCAGCCCCCACC ATCACCCACCTGCTGCACGGGGCCACCACCCAGCCCCCACC < 41bp 0.784506388663329 0.44897999870034 NA NA prediction 0.569012777326658 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823995 chr3:183823994 nonsynonymous SNV 0.889 1 20 hm7G_associated_SNPs_7725 0 0 0 0 1 HTR3E chr3:183823916 3'AG 183823916 Downstream 79bp 7499 chr10 118100346 118100346 1 + T G SKCM 118100347 + 118100327 118100367 41 ATTACAAACCATAGGAATATGCTTCTTCAAACCTTTGTAAG ATTACAAACCATAGGAATAGGCTTCTTCAAACCTTTGTAAG < 41bp 0.807508122218003 0.523052814402611 NA NA prediction 0.568910615630783 Functional Loss - CCDC172 ENSG00000182645 CDS Human protein_coding chr10:118100347 chr10:118100346 nonsynonymous SNV 0.547 0 20 hm7G_associated_SNPs_7726 0 0 0 0 1 CCDC172 chr10:118100362 5'GT 118100362 Upstream 17bp 7500 chr19 51227212 51227212 1 + T G PRAD 51227213 + 51227193 51227233 41 GGAGGGGGGATGAGAATCCTGCCGGAACTGTTGAGGGAAAA GGAGGGGGGATGAGAATCCGGCCGGAACTGTTGAGGGAAAA < 41bp 0.850249410900603 0.565838253065618 NA NA prediction 0.56882231566997 Functional Loss - CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51227213 chr19:51227212 synonymous SNV . 0 20 hm7G_associated_SNPs_7730 0 0 0 0 1 CLEC11A chr19:51227162 3'AG 51227162 Downstream 51bp 7501 chr6 42018312 42018312 1 + T G rs61744022 42018313 + 42018293 42018333 41 CGGCCACAGCTGGGGCCGGTGGCTCCGGAACGGTAAGGGCA CGGCCACAGCTGGGGCCGGGGGCTCCGGAACGGTAAGGGCA < 41bp 0.832175390526554 0.547771575109706 NA NA prediction 0.568807630833696 Functional Loss - TAF8 ENSG00000137413 CDS Human protein_coding chr6:42018313 chr6:42018312 synonymous SNV . 0 20 hm7G_associated_SNPs_7731 0 0 0 0 1 TAF8 chr6:42018324 5'GT 42018324 Upstream 13bp 7502 chr1 40735690 40735690 1 + T G OV 40735691 + 40735671 40735711 41 GCAATCAAGAAATTTGTTGTGACTCAGTGTATTTTGTTGCC GCAATCAAGAAATTTGTTGGGACTCAGTGTATTTTGTTGCC < 41bp 0.784351754071227 0.488601378268233 NA NA prediction 0.568703508142454 Functional Loss - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40735691 chr1:40735690 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_7733 0 0 1 0 1 ZMPSTE24 chr1:40735647 3'AG 40735647 Downstream 44bp 7503 chr18 44626630 44626630 1 + T G rs2289130 44626631 + 44626611 44626651 41 TTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAGAT TTTGGCTGTTTCAGGAGACGGAGGGCTACTCAGGCTCAGAT < 41bp 0.784200858466627 0.472841825173342 NA NA prediction 0.568401716933254 Functional Loss - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44626631 chr18:44626630 synonymous SNV . 0 20 hm7G_associated_SNPs_7739 0 0 0 0 2 KATNAL2 chr18:44626625 3'AG 44626625 Downstream 6bp 7504 chr18 44626630 44626630 1 + T G rs2289130 44626631 + 44626611 44626651 41 TTTGGCTGTTTCAGGAGACTGAGGGCTACTCAGGCTCAGAT TTTGGCTGTTTCAGGAGACGGAGGGCTACTCAGGCTCAGAT < 41bp 0.784200858466627 0.472841825173342 NA NA prediction 0.568401716933254 Functional Loss - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44626631 chr18:44626630 synonymous SNV . 0 20 hm7G_associated_SNPs_7739 0 0 0 0 2 KATNAL2 chr18:44626727 5'GT 44626727 Upstream 98bp 7505 chr5 95099223 95099223 1 + T G CHOL 95099224 + 95099204 95099244 41 GTTTACAGGTGCTTTTCAGTGGGAAGAATTGGAAGAAGATA GTTTACAGGTGCTTTTCAGGGGGAAGAATTGGAAGAAGATA < 41bp 0.830116486301893 0.545931168477562 NA NA prediction 0.568370635648663 Functional Loss - RHOBTB3 ENSG00000164292 CDS Human protein_coding chr5:95099224 chr5:95099223 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7740 0 0 1 0 1 RHOBTB3 chr5:95099212 3'AG 95099212 Downstream 12bp 7506 chr8 42129654 42129654 1 + T G UCEC 42129655 + 42129635 42129675 41 CCCTGACAACGCAGACATGTGGGGCCTGGGAAATGAAAGAG CCCTGACAACGCAGACATGGGGGGCCTGGGAAATGAAAGAG < 41bp 0.784135448392004 0.461858333181829 NA NA prediction 0.568270896784008 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42129655 chr8:42129654 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7741 0 0 1 0 1 IKBKB chr8:42129723 5'GT 42129723 Upstream 70bp 7507 chr4 71888254 71888254 1 + T G GBM 71888255 + 71888235 71888275 41 AGAAACCTGTATTATTTTTTGAACGATCTGTGTATAGTGAC AGAAACCTGTATTATTTTTGGAACGATCTGTGTATAGTGAC < 41bp 0.784123176583129 0.474756434103465 NA NA prediction 0.568246353166258 Functional Loss - DCK ENSG00000156136 CDS Human protein_coding chr4:71888255 chr4:71888254 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7742 0 0 1 0 1 DCK chr4:71888277 5'GT 71888277 Upstream 24bp 7508 chr12 52312886 52312886 1 + T G GBM 52312887 + 52312867 52312907 41 CCCACCATCCCTAACCGGCTGGCTGCAGACCCGGTGAGGCC CCCACCATCCCTAACCGGCGGGCTGCAGACCCGGTGAGGCC < 41bp 0.84078196936295 0.556795509275328 NA NA prediction 0.567972920175245 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52312887 chr12:52312886 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7746 0 0 0 0 1 ACVRL1 chr12:52312899 5'GT 52312899 Upstream 14bp 7509 chr19 47539368 47539368 1 + T G ESCA 47539369 + 47539349 47539389 41 CCTCCTCTTCCTCTTCGCTTGCAGATACCCCCGAGATCGGT CCTCCTCTTCCTCTTCGCTGGCAGATACCCCCGAGATCGGT < 41bp 0.783889304107147 0.454345548733147 NA NA prediction 0.567778608214294 Functional Loss - NPAS1 ENSG00000130751 CDS Human protein_coding chr19:47539369 chr19:47539368 synonymous SNV . 0 20 hm7G_associated_SNPs_7747 0 0 1 0 1 NPAS1 chr19:47539387 5'GT 47539387 Upstream 20bp 7510 chr6 123039023 123039023 1 + T G COAD 123039024 + 123039004 123039044 41 CAAGGGCAGGCCGCCGGAATGCCTTACCAGACATCCAGAGT CAAGGGCAGGCCGCCGGAAGGCCTTACCAGACATCCAGAGT < 41bp 0.845249595321316 0.561392623507196 NA NA prediction 0.56771394362824 Functional Loss - PKIB ENSG00000135549 CDS Human protein_coding chr6:123039024 chr6:123039023 nonsynonymous SNV 0.653 4 20 hm7G_associated_SNPs_7749 0 0 1 0 2 PKIB chr6:123038932 3'AG 123038932 Downstream 92bp 7511 chr6 123039023 123039023 1 + T G COAD 123039024 + 123039004 123039044 41 CAAGGGCAGGCCGCCGGAATGCCTTACCAGACATCCAGAGT CAAGGGCAGGCCGCCGGAAGGCCTTACCAGACATCCAGAGT < 41bp 0.845249595321316 0.561392623507196 NA NA prediction 0.56771394362824 Functional Loss - PKIB ENSG00000135549 CDS Human protein_coding chr6:123039024 chr6:123039023 nonsynonymous SNV 0.653 4 20 hm7G_associated_SNPs_7749 0 0 1 0 2 PKIB chr6:123039108 5'GT 123039108 Upstream 86bp 7512 chr17 29851008 29851008 1 + T G HNSC 29851009 + 29850989 29851029 41 CAAGAGAACACACAGCTGGTGCACAGGTCAAGCAGGCAGCG CAAGAGAACACACAGCTGGGGCACAGGTCAAGCAGGCAGCG < 41bp 0.844602477390635 0.560758071710629 NA NA prediction 0.56768881136001 Functional Loss - RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29851009 chr17:29851008 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_7752 0 0 1 0 2 RAB11FIP4 chr17:29850911 3'AG 29850911 Downstream 98bp 7513 chr17 29851008 29851008 1 + T G HNSC 29851009 + 29850989 29851029 41 CAAGAGAACACACAGCTGGTGCACAGGTCAAGCAGGCAGCG CAAGAGAACACACAGCTGGGGCACAGGTCAAGCAGGCAGCG < 41bp 0.844602477390635 0.560758071710629 NA NA prediction 0.56768881136001 Functional Loss - RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29851009 chr17:29851008 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_7752 0 0 1 0 2 RAB11FIP4 chr17:29851014 5'GT 29851014 Upstream 7bp 7514 chr16 8729062 8729062 1 + T G SKCM 8729063 + 8729043 8729083 41 CTCCTGGCAGACTACATCCTGTTCCGACAGGACCTCTTCCG CTCCTGGCAGACTACATCCGGTTCCGACAGGACCTCTTCCG < 41bp 0.850186967541296 0.566362763262572 NA NA prediction 0.567648408557447 Functional Loss - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8729063 chr16:8729062 nonsynonymous SNV 0.914 4 20 hm7G_associated_SNPs_7753 0 0 1 0 1 METTL22 chr16:8729025 3'AG 8729025 Downstream 38bp 7515 chr5 67589626 67589626 1 + T G SKCM 67589627 + 67589607 67589647 41 AAGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATAT AAGAAAAAAGTCGAGAATAGGATAGATTATATGAAGAATAT < 41bp 0.783716996180085 0.497316038392357 NA NA prediction 0.56743399236017 Functional Loss - PIK3R1 ENSG00000145675 CDS Human protein_coding chr5:67589627 chr5:67589626 stopgain 0.999 1 20 hm7G_associated_SNPs_7755 0 0 0 0 2 PIK3R1 chr5:67589537 3'AG 67589537 Downstream 90bp 7516 chr5 67589626 67589626 1 + T G SKCM 67589627 + 67589607 67589647 41 AAGAAAAAAGTCGAGAATATGATAGATTATATGAAGAATAT AAGAAAAAAGTCGAGAATAGGATAGATTATATGAAGAATAT < 41bp 0.783716996180085 0.497316038392357 NA NA prediction 0.56743399236017 Functional Loss - PIK3R1 ENSG00000145675 CDS Human protein_coding chr5:67589627 chr5:67589626 stopgain 0.999 1 20 hm7G_associated_SNPs_7755 0 0 0 0 2 PIK3R1 chr5:67589662 5'GT 67589662 Upstream 37bp 7517 chr10 60556129 60556129 1 + T G UCEC 60556130 + 60556110 60556150 41 TGAAAAGTGTTGAGCGAAATGCCTTAAATATGTATGAAGCA TGAAAAGTGTTGAGCGAAAGGCCTTAAATATGTATGAAGCA < 41bp 0.831310094548608 0.547641649808443 NA NA prediction 0.56733688948033 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60556130 chr10:60556129 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7756 0 0 1 0 1 BICC1 chr10:60556100 3'AG 60556100 Downstream 30bp 7518 chr18 21109657 21109657 1 - A C UCEC 21109656 - 21109636 21109676 41 CTGTACTGCAATCTGAAACTGGTTAAGAGAACGAATGTATT CTGTACTGCAATCTGAAACGGGTTAAGAGAACGAATGTATT < 41bp 0.783597245850034 0.489294288578558 NA NA prediction 0.567194491700068 Functional Loss - C18orf8 ENSG00000141452;ENSG00000141458 CDS Human protein_coding chr18:21109656 chr18:21109657 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7759 0 0 1 0 1 C18orf8 chr18:21109691 3'AG 21109691 Downstream 35bp 7519 chrX 138623341 138623341 1 + T G GBM 138623342 + 138623322 138623362 41 GATTTGAAGGAAAGAACTGTGAATTAGGTAAGTAACTATTT GATTTGAAGGAAAGAACTGGGAATTAGGTAAGTAACTATTT < 41bp 0.790125271951882 0.506682240318935 NA NA prediction 0.566886063265894 Functional Loss - F9 ENSG00000101981 CDS Human protein_coding chrX:138623342 chrX:138623341 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7762 0 0 0 0 1 F9 chrX:138623348 5'GT 138623348 Upstream 8bp 7520 chr4 174225158 174225158 1 + T G OV 174225159 + 174225139 174225179 41 CTTCATAGATATGGCAGTGTGGTGGCAAATTATTATTTGTT CTTCATAGATATGGCAGTGGGGTGGCAAATTATTATTTGTT < 41bp 0.804114810457116 0.52068956422758 NA NA prediction 0.566850492459071 Functional Loss - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174225159 chr4:174225158 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7763 0 0 1 0 1 GALNT7 chr4:174225147 3'AG 174225147 Downstream 12bp 7521 chr1 244528032 244528032 1 + T G rs138914005 244528033 + 244528013 244528053 41 TCCGACTACGAGAATTTATTGAGCGTCGCCCAGTGATCCCG TCCGACTACGAGAATTTATGGAGCGTCGCCCAGTGATCCCG < 41bp 0.783384261798396 0.465331347502616 NA NA prediction 0.566768523596793 Functional Loss - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244528033 chr1:244528032 nonsynonymous SNV 0.334 1 20 hm7G_associated_SNPs_7766 0 0 0 0 2 C1orf100 chr1:244527990 3'AG 244527990 Downstream 43bp 7522 chr1 244528032 244528032 1 + T G rs138914005 244528033 + 244528013 244528053 41 TCCGACTACGAGAATTTATTGAGCGTCGCCCAGTGATCCCG TCCGACTACGAGAATTTATGGAGCGTCGCCCAGTGATCCCG < 41bp 0.783384261798396 0.465331347502616 NA NA prediction 0.566768523596793 Functional Loss - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244528033 chr1:244528032 nonsynonymous SNV 0.334 1 20 hm7G_associated_SNPs_7766 0 0 0 0 2 C1orf100 chr1:244528058 5'GT 244528058 Upstream 27bp 7523 chr13 73505303 73505303 1 + T G UCEC 73505304 + 73505284 73505324 41 TCTTATTTCATTTGCCTAGTGTTCACTTGGCAAGAAGAGTG TCTTATTTCATTTGCCTAGGGTTCACTTGGCAAGAAGAGTG < 41bp 0.785273642461865 0.501993431390508 NA NA prediction 0.566560422142715 Functional Loss - PIBF1 ENSG00000083535 CDS Human protein_coding chr13:73505304 chr13:73505303 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_7768 0 0 0 0 1 PIBF1 chr13:73505303 5'GT 73505303 Upstream 1bp 7524 chr10 106121872 106121872 1 + T G SKCM 106121873 + 106121853 106121893 41 GCTCTGAAAGAGGAAATAGTGAACCTGACCAAACTAGTGGA GCTCTGAAAGAGGAAATAGGGAACCTGACCAAACTAGTGGA < 41bp 0.829062121349682 0.545803012168559 NA NA prediction 0.566518218362246 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121873 chr10:106121872 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7769 0 0 0 0 2 CFAP58 chr10:106121781 3'AG 106121781 Downstream 92bp 7525 chr10 106121872 106121872 1 + T G SKCM 106121873 + 106121853 106121893 41 GCTCTGAAAGAGGAAATAGTGAACCTGACCAAACTAGTGGA GCTCTGAAAGAGGAAATAGGGAACCTGACCAAACTAGTGGA < 41bp 0.829062121349682 0.545803012168559 NA NA prediction 0.566518218362246 Functional Loss - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121873 chr10:106121872 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7769 0 0 0 0 2 CFAP58 chr10:106121929 5'GT 106121929 Upstream 58bp 7526 chr10 121436068 121436068 1 + T G rs3858339 121436069 + 121436049 121436089 41 TTGGACCAGAACTCCCTCCTGGACACATCCCAATTCAAGTG TTGGACCAGAACTCCCTCCGGGACACATCCCAATTCAAGTG < 41bp 0.820916400935589 0.537731794850968 NA NA prediction 0.566369212169242 Functional Loss - BAG3 ENSG00000151929 CDS Human protein_coding chr10:121436069 chr10:121436068 synonymous SNV . 0 20 hm7G_associated_SNPs_7771 4 0 1 0 2 BAG3 chr10:121435976 3'AG 121435976 Downstream 93bp 7527 chr10 121436068 121436068 1 + T G rs3858339 121436069 + 121436049 121436089 41 TTGGACCAGAACTCCCTCCTGGACACATCCCAATTCAAGTG TTGGACCAGAACTCCCTCCGGGACACATCCCAATTCAAGTG < 41bp 0.820916400935589 0.537731794850968 NA NA prediction 0.566369212169242 Functional Loss - BAG3 ENSG00000151929 CDS Human protein_coding chr10:121436069 chr10:121436068 synonymous SNV . 0 20 hm7G_associated_SNPs_7771 4 0 1 0 2 BAG3 chr10:121435979 3'AG 121435979 Downstream 90bp 7528 chr19 1058887 1058887 1 + T G OV 1058888 + 1058868 1058908 41 GCCCGTGAACGGGAGCGGGTGGTCCAAGGAGCCACCCAGGG GCCCGTGAACGGGAGCGGGGGGTCCAAGGAGCCACCCAGGG < 41bp 0.783153282069965 0.453344416489368 NA NA prediction 0.566306564139931 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1058888 chr19:1058887 nonsynonymous SNV 0.431 4 20 hm7G_associated_SNPs_7772 0 0 1 0 2 ABCA7 chr19:1058819 3'AG 1058819 Downstream 69bp 7529 chr19 1058887 1058887 1 + T G OV 1058888 + 1058868 1058908 41 GCCCGTGAACGGGAGCGGGTGGTCCAAGGAGCCACCCAGGG GCCCGTGAACGGGAGCGGGGGGTCCAAGGAGCCACCCAGGG < 41bp 0.783153282069965 0.453344416489368 NA NA prediction 0.566306564139931 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1058888 chr19:1058887 nonsynonymous SNV 0.431 4 20 hm7G_associated_SNPs_7772 0 0 1 0 2 ABCA7 chr19:1058939 5'GT 1058939 Upstream 53bp 7530 chr5 36181926 36181926 1 + T G CHOL 36181927 + 36181907 36181947 41 TCTTCCTTTCCAGTGAACTTGGAGAAATTCCCACACTAAAA TCTTCCTTTCCAGTGAACTGGGAGAAATTCCCACACTAAAA < 41bp 0.791456162797621 0.508326544997076 NA NA prediction 0.566259235601091 Functional Loss - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36181927 chr5:36181926 synonymous SNV . 0 20 hm7G_associated_SNPs_7773 0 0 1 0 1 SKP2 chr5:36181920 3'AG 36181920 Downstream 7bp 7531 chr3 183777999 183777999 1 + T G COAD 183778000 + 183777980 183778020 41 CCAGAGAGACCGAGCCAGATGGGGGCTCAGGATGGACAAAG CCAGAGAGACCGAGCCAGAGGGGGGCTCAGGATGGACAAAG < 41bp 0.818943525296911 0.535901032716527 NA NA prediction 0.566084985160768 Functional Loss - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183778000 chr3:183777999 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_7775 0 0 0 0 1 HTR3C chr3:183777938 3'AG 183777938 Downstream 62bp 7532 chr9 72965329 72965329 1 + T G LUAD 72965330 + 72965310 72965350 41 GAACGGAGAGTGTTTGAAATGGTTGTAAATACTGCCTGTAA GAACGGAGAGTGTTTGAAAGGGTTGTAAATACTGCCTGTAA < 41bp 0.809165016722023 0.526123602510162 NA NA prediction 0.566082828423722 Functional Loss - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72965330 chr9:72965329 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7776 0 0 1 0 2 SMC5 chr9:72965292 3'AG 72965292 Downstream 38bp 7533 chr9 72965329 72965329 1 + T G LUAD 72965330 + 72965310 72965350 41 GAACGGAGAGTGTTTGAAATGGTTGTAAATACTGCCTGTAA GAACGGAGAGTGTTTGAAAGGGTTGTAAATACTGCCTGTAA < 41bp 0.809165016722023 0.526123602510162 NA NA prediction 0.566082828423722 Functional Loss - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72965330 chr9:72965329 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7776 0 0 1 0 2 SMC5 chr9:72965387 5'GT 72965387 Upstream 59bp 7534 chr3 140866008 140866008 1 + T G SKCM 140866009 + 140865989 140866029 41 CCCCTGCCACTGATGGACCTGTGCCGGAGATCCATCCGCTC CCCCTGCCACTGATGGACCGGTGCCGGAGATCCATCCGCTC < 41bp 0.825478803286627 0.542563508149919 NA NA prediction 0.565830590273416 Functional Loss - SPSB4 ENSG00000175093 CDS Human protein_coding chr3:140866009 chr3:140866008 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7778 0 0 0 0 1 SPSB4 chr3:140865984 3'AG 140865984 Downstream 25bp 7535 chr5 131722739 131722739 1 + T G LGG 131722740 + 131722720 131722760 41 CATCCCTGAGTCCCCCCGATGGCTCATCTCTCAGGGACGAT CATCCCTGAGTCCCCCCGAGGGCTCATCTCTCAGGGACGAT < 41bp 0.856578473661623 0.573690048440515 NA NA prediction 0.565776850442216 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131722740 chr5:131722739 nonsynonymous SNV 0.941 4 20 hm7G_associated_SNPs_7779 0 0 1 0 1 SLC22A5 chr5:131722717 3'AG 131722717 Downstream 23bp 7536 chr2 102805736 102805736 1 + T G SKCM 102805737 + 102805717 102805757 41 TTTGTTTCTCCCCATGGAATGGGGGGACTCAGGAGTCTACC TTTGTTTCTCCCCATGGAAGGGGGGGACTCAGGAGTCTACC < 41bp 0.823402327758249 0.540528289496519 NA NA prediction 0.565748076523461 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102805737 chr2:102805736 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_7781 0 0 0 0 1 IL1RL2 chr2:102805770 5'GT 102805770 Upstream 35bp 7537 chr1 15545887 15545887 1 + T G UCEC 15545888 + 15545868 15545908 41 GTTCCCAGCTACGAGGAAGTGATGAACACAAACTACTCAGA GTTCCCAGCTACGAGGAAGGGATGAACACAAACTACTCAGA < 41bp 0.818865920912092 0.536041905645896 NA NA prediction 0.56564803053239 Functional Loss - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15545888 chr1:15545887 stoploss 1.000 3 20 hm7G_associated_SNPs_7782 0 0 1 0 2 TMEM51 chr1:15545822 3'AG 15545822 Downstream 66bp 7538 chr1 15545887 15545887 1 + T G UCEC 15545888 + 15545868 15545908 41 GTTCCCAGCTACGAGGAAGTGATGAACACAAACTACTCAGA GTTCCCAGCTACGAGGAAGGGATGAACACAAACTACTCAGA < 41bp 0.818865920912092 0.536041905645896 NA NA prediction 0.56564803053239 Functional Loss - TMEM51 ENSG00000171729 CDS Human protein_coding chr1:15545888 chr1:15545887 stoploss 1.000 3 20 hm7G_associated_SNPs_7782 0 0 1 0 2 TMEM51 chr1:15545826 3'AG 15545826 Downstream 62bp 7539 chrX 70603813 70603813 1 + T G CESC 70603814 + 70603794 70603834 41 TTTCTTTGTTCTGGACAGATGAGAGAACAAGAGAGGCAAGC TTTCTTTGTTCTGGACAGAGGAGAGAACAAGAGAGGCAAGC < 41bp 0.782816721756937 0.476735032969955 NA NA prediction 0.565633443513875 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70603814 chrX:70603813 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_7783 0 0 1 0 1 TAF1 chrX:70603812 3'AG 70603812 Downstream 2bp 7540 chr12 102069101 102069101 1 + T G COAD 102069102 + 102069082 102069122 41 CACCCCAAATTGTGAAGATTGAGGATGTCTGGGGAGAAAAT CACCCCAAATTGTGAAGATGGAGGATGTCTGGGGAGAAAAT < 41bp 0.809199451937724 0.526395966321255 NA NA prediction 0.565606971232938 Functional Loss - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102069102 chr12:102069101 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_7785 0 0 0 0 1 MYBPC1 chr12:102069070 3'AG 102069070 Downstream 32bp 7541 chr15 85406082 85406082 1 + T G UCEC 85406083 + 85406063 85406103 41 ATCATCAAGGTGTCCAGCCTGCTTGTGTTTGGGCCCAGCAG ATCATCAAGGTGTCCAGCCGGCTTGTGTTTGGGCCCAGCAG < 41bp 0.848525575712832 0.565742010066498 NA NA prediction 0.565567131292667 Functional Loss - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85406083 chr15:85406082 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_7786 0 0 0 0 1 ALPK3 chr15:85406146 5'GT 85406146 Upstream 65bp 7542 chr10 7773812 7773812 1 + T G LUSC 7773813 + 7773793 7773833 41 CCACTCCATTGCTCCGGAATGTTCAGTTCAACTATCCCCAT CCACTCCATTGCTCCGGAAGGTTCAGTTCAACTATCCCCAT < 41bp 0.782768484862695 0.474475404041783 NA NA prediction 0.56553696972539 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7773813 chr10:7773812 nonsynonymous SNV 0.955 1 20 hm7G_associated_SNPs_7787 0 0 1 0 1 ITIH2 chr10:7773774 3'AG 7773774 Downstream 39bp 7543 chr16 89761352 89761352 1 + T G UCEC 89761353 + 89761333 89761373 41 CCATAGGGCTTTTCCAAGCTGCCACTGGTCGGCCAGTACAG CCATAGGGCTTTTCCAAGCGGCCACTGGTCGGCCAGTACAG < 41bp 0.837932036223909 0.555264136795184 NA NA prediction 0.56533579885745 Functional Loss - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89761353 chr16:89761352 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_7789 0 0 1 2 1 CDK10 chr16:89761339 3'AG 89761339 Downstream 14bp 7544 chr20 62654191 62654191 1 + T G SKCM 62654192 + 62654172 62654212 41 CCCCAGCAAGAAGAGTGTGTGGCTGCGCGCCGCGTACTTCG CCCCAGCAAGAAGAGTGTGGGGCTGCGCGCCGCGTACTTCG < 41bp 0.85691111179626 0.574249603310298 NA NA prediction 0.565323016971924 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62654192 chr20:62654191 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_7790 0 0 1 0 1 PRPF6 chr20:62654231 5'GT 62654231 Upstream 41bp 7545 chr19 51358246 51358246 1 + T G SKCM 51358247 + 51358227 51358267 41 GTCTTCCTCACCCTGTCCGTGACGTGGATTGGTGAGAGGGG GTCTTCCTCACCCTGTCCGGGACGTGGATTGGTGAGAGGGG < 41bp 0.782571639957266 0.481679211058754 NA NA prediction 0.565143279914532 Functional Loss - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51358247 chr19:51358246 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_7792 0 0 0 0 1 KLK3 chr19:51358257 5'GT 51358257 Upstream 12bp 7546 chr12 51450027 51450027 1 + T G LUAD 51450028 + 51450008 51450048 41 CAACTCCAGGCTTTGCACGTGGTGAGCACTTTGAGGGCTTC CAACTCCAGGCTTTGCACGGGGTGAGCACTTTGAGGGCTTC < 41bp 0.82622667378863 0.543657619457983 NA NA prediction 0.565138108661294 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51450028 chr12:51450027 nonsynonymous SNV 0.665 1 20 hm7G_associated_SNPs_7793 0 0 1 0 1 LETMD1 chr12:51450028 5'GT 51450028 Upstream 2bp 7547 chr12 104476649 104476649 1 + T G UCEC 104476650 + 104476630 104476670 41 AGCACTGAATAGTCAAGTTTGCTGCAAGGATCTTTGGTATC AGCACTGAATAGTCAAGTTGGCTGCAAGGATCTTTGGTATC < 41bp 0.807599114775786 0.525302927141734 NA NA prediction 0.564592375268103 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104476650 chr12:104476649 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7797 0 0 1 0 1 HCFC2 chr12:104476679 5'GT 104476679 Upstream 31bp 7548 chr1 196695745 196695745 1 + T G UCEC 196695746 + 196695726 196695766 41 GACCTAATAAAATTCAATGTGTTGATGGAGAGTGGACAACT GACCTAATAAAATTCAATGGGTTGATGGAGAGTGGACAACT < 41bp 0.797868073427162 0.515589404372721 NA NA prediction 0.564557338108881 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196695746 chr1:196695745 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_7798 0 0 0 0 1 CFH chr1:196695782 5'GT 196695782 Upstream 38bp 7549 chr22 21363642 21363642 1 - A C BRCA 21363641 - 21363621 21363661 41 CTCATGAAGCGGCTCTCGGTGGACTACGGGAAGAAGTCCAA CTCATGAAGCGGCTCTCGGGGGACTACGGGAAGAAGTCCAA < 41bp 0.806221211341838 0.523972887836328 NA NA prediction 0.564496647011021 Functional Loss - THAP7-AS1;TUBA3FP ENSG00000161149;ENSG00000230513 ncRNA_exonic Human other chr22:21363641 chr22:21363642 . . 0 20 hm7G_associated_SNPs_7799 0 0 1 0 1 THAP7-AS1;TUBA3FP chr22:21363738 3'AG 21363738 Downstream 97bp 7550 chr22 40758996 40758996 1 + T G COAD 40758997 + 40758977 40759017 41 TTTTCTAGACGGATCTGTTTGGCCGAGGCATTTCTTACCGC TTTTCTAGACGGATCTGTTGGGCCGAGGCATTTCTTACCGC < 41bp 0.843588256382353 0.561354479291841 NA NA prediction 0.564467554181024 Functional Loss - ADSL ENSG00000239900 CDS Human protein_coding chr22:40758997 chr22:40758996 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7800 0 0 1 0 1 ADSL chr22:40758985 3'AG 40758985 Downstream 12bp 7551 chr17 44803958 44803958 1 + T G BLCA 44803959 + 44803939 44803979 41 CAGCTCAGTTGTGTGGTTGTGGATGACATTGAGAGATTGCT CAGCTCAGTTGTGTGGTTGGGGATGACATTGAGAGATTGCT < 41bp 0.782218838533026 0.472044511531895 NA NA prediction 0.564437677066052 Functional Loss - NSF ENSG00000073969 CDS Human protein_coding chr17:44803959 chr17:44803958 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7801 0 0 1 0 2 NSF chr17:44803915 3'AG 44803915 Downstream 44bp 7552 chr17 44803958 44803958 1 + T G BLCA 44803959 + 44803939 44803979 41 CAGCTCAGTTGTGTGGTTGTGGATGACATTGAGAGATTGCT CAGCTCAGTTGTGTGGTTGGGGATGACATTGAGAGATTGCT < 41bp 0.782218838533026 0.472044511531895 NA NA prediction 0.564437677066052 Functional Loss - NSF ENSG00000073969 CDS Human protein_coding chr17:44803959 chr17:44803958 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7801 0 0 1 0 2 NSF chr17:44803981 5'GT 44803981 Upstream 24bp 7553 chr1 182787771 182787771 1 + T G BLCA 182787772 + 182787752 182787792 41 TCTCTTAGACTTCGGGCAATGTGTTGATCAGAATCGCCAGC TCTCTTAGACTTCGGGCAAGGTGTTGATCAGAATCGCCAGC < 41bp 0.782209051942014 0.471825499663979 NA NA prediction 0.564418103884027 Functional Loss - NPL ENSG00000135838 CDS Human protein_coding chr1:182787772 chr1:182787771 nonsynonymous SNV 0.953 5 20 hm7G_associated_SNPs_7802 0 0 1 0 2 NPL chr1:182787676 3'AG 182787676 Downstream 96bp 7554 chr1 182787771 182787771 1 + T G BLCA 182787772 + 182787752 182787792 41 TCTCTTAGACTTCGGGCAATGTGTTGATCAGAATCGCCAGC TCTCTTAGACTTCGGGCAAGGTGTTGATCAGAATCGCCAGC < 41bp 0.782209051942014 0.471825499663979 NA NA prediction 0.564418103884027 Functional Loss - NPL ENSG00000135838 CDS Human protein_coding chr1:182787772 chr1:182787771 nonsynonymous SNV 0.953 5 20 hm7G_associated_SNPs_7802 0 0 1 0 2 NPL chr1:182787824 5'GT 182787824 Upstream 54bp 7555 chr8 22462346 22462346 1 + T G rs11555543 22462347 + 22462327 22462367 41 CCCCCCGGTGTCGCTGCCCTGGCCCGCAGGTGGGTTGGGGG CCCCCCGGTGTCGCTGCCCGGGCCCGCAGGTGGGTTGGGGG < 41bp 0.782207182603196 0.466101316540211 NA NA prediction 0.564414365206393 Functional Loss - CCAR2;C8orf58 ENSG00000158941 CDS Human protein_coding chr8:22462347 chr8:22462346 unknown . 0 20 hm7G_associated_SNPs_7803 0 0 1 0 1 CCAR2;C8orf58 chr8:22462355 5'GT 22462355 Upstream 10bp 7556 chr4 187005868 187005868 1 + T G rs115677523 187005869 + 187005849 187005889 41 CCATTATATTGGTTTTCCTTGAGGAGATTCCAGATTATAAA CCATTATATTGGTTTTCCTGGAGGAGATTCCAGATTATAAA < 41bp 0.787360986318853 0.505183983222475 NA NA prediction 0.564354006192756 Functional Loss - TLR3 ENSG00000164342 CDS Human protein_coding chr4:187005869 chr4:187005868 synonymous SNV . 0 20 hm7G_associated_SNPs_7805 0 0 1 0 1 TLR3 chr4:187005799 3'AG 187005799 Downstream 70bp 7557 chr5 149749147 149749147 1 + T G SKCM 149749148 + 149749128 149749168 41 AGGACACCTCCAGCTCCAGTGATGAGACAGACGTGGAGGTA AGGACACCTCCAGCTCCAGGGATGAGACAGACGTGGAGGTA < 41bp 0.782125219053209 0.444442986535347 NA NA prediction 0.564250438106419 Functional Loss - TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149749148 chr5:149749147 nonsynonymous SNV 0.805 4 20 hm7G_associated_SNPs_7806 0 0 1 0 2 TCOF1 chr5:149749092 3'AG 149749092 Downstream 56bp 7558 chr5 149749147 149749147 1 + T G SKCM 149749148 + 149749128 149749168 41 AGGACACCTCCAGCTCCAGTGATGAGACAGACGTGGAGGTA AGGACACCTCCAGCTCCAGGGATGAGACAGACGTGGAGGTA < 41bp 0.782125219053209 0.444442986535347 NA NA prediction 0.564250438106419 Functional Loss - TCOF1 ENSG00000070814 CDS Human protein_coding chr5:149749148 chr5:149749147 nonsynonymous SNV 0.805 4 20 hm7G_associated_SNPs_7806 0 0 1 0 2 TCOF1 chr5:149749165 5'GT 149749165 Upstream 19bp 7559 chr3 160137223 160137223 1 + T G rs567186472 160137224 + 160137204 160137244 41 ATGATCTCTTTCAAAAAGTTGAAGAAGCAAAGAGCTCATTA ATGATCTCTTTCAAAAAGTGGAAGAAGCAAAGAGCTCATTA < 41bp 0.819825658023366 0.537780603518205 NA NA prediction 0.564090109010321 Functional Loss - SMC4 ENSG00000113810 CDS Human protein_coding chr3:160137224 chr3:160137223 synonymous SNV . 0 20 hm7G_associated_SNPs_7807 0 0 1 0 1 SMC4 chr3:160137146 3'AG 160137146 Downstream 78bp 7560 chr10 102795265 102795265 1 + T G DLBC 102795266 + 102795246 102795286 41 TTCTGCAGGGCCGGCGTGGTGACCCCAGGGATCACCGAGGA TTCTGCAGGGCCGGCGTGGGGACCCCAGGGATCACCGAGGA < 41bp 0.846115607062837 0.564235124054494 NA NA prediction 0.563760966016686 Functional Loss - SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102795266 chr10:102795265 nonsynonymous SNV 0.603 0 20 hm7G_associated_SNPs_7811 0 0 1 0 1 SFXN3 chr10:102795254 3'AG 102795254 Downstream 12bp 7561 chr4 87679416 87679416 1 + T G UCEC 87679417 + 87679397 87679437 41 TATAAATTCCCAATAGATGTGCTACACAAAAGATGGAGCAT TATAAATTCCCAATAGATGGGCTACACAAAAGATGGAGCAT < 41bp 0.781851379662537 0.481523693384181 NA NA prediction 0.563702759325075 Functional Loss - PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87679417 chr4:87679416 nonsynonymous SNV 0.168 0 20 hm7G_associated_SNPs_7813 0 0 0 0 2 PTPN13 chr4:87679413 3'AG 87679413 Downstream 4bp 7562 chr4 87679416 87679416 1 + T G UCEC 87679417 + 87679397 87679437 41 TATAAATTCCCAATAGATGTGCTACACAAAAGATGGAGCAT TATAAATTCCCAATAGATGGGCTACACAAAAGATGGAGCAT < 41bp 0.781851379662537 0.481523693384181 NA NA prediction 0.563702759325075 Functional Loss - PTPN13 ENSG00000163629 CDS Human protein_coding chr4:87679417 chr4:87679416 nonsynonymous SNV 0.168 0 20 hm7G_associated_SNPs_7813 0 0 0 0 2 PTPN13 chr4:87679502 5'GT 87679502 Upstream 87bp 7563 chr9 127231795 127231795 1 + T G rs183725843 127231796 + 127231776 127231816 41 CATGTTGAGCCCACAGCCCTGCCTGCAGCAGCAGATCTGGA CATGTTGAGCCCACAGCCCGGCCTGCAGCAGCAGATCTGGA < 41bp 0.781796427209206 0.475490892785714 NA NA prediction 0.563592854418411 Functional Loss - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127231796 chr9:127231795 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_7815 0 0 0 0 1 PSMB7;NR5A1 chr9:127231711 3'AG 127231711 Downstream 85bp 7564 chr6 52530199 52530199 1 + T G UCEC 52530200 + 52530180 52530220 41 CGTTTGCTATCTTGAAAGCTGCAGCCCCCGTAGAGAAGGTA CGTTTGCTATCTTGAAAGCGGCAGCCCCCGTAGAGAAGGTA < 41bp 0.818326189093607 0.536558123992579 NA NA prediction 0.563536130202057 Functional Loss - LOC730101 ENSG00000216775 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:52530200 chr6:52530199 . . 0 20 hm7G_associated_SNPs_7816 0 0 1 0 1 LOC730101 chr6:52530217 5'GT 52530217 Upstream 19bp 7565 chr13 95264643 95264643 1 + T G rs113121378 95264644 + 95264624 95264664 41 ATTTTAGTGCTGGAGAATCTGGTAAGAATATGTATTTGAAT ATTTTAGTGCTGGAGAATCGGGTAAGAATATGTATTTGAAT < 41bp 0.784445836057479 0.502781270757517 NA NA prediction 0.563329130599923 Functional Loss - GPR180 ENSG00000152749 CDS Human protein_coding chr13:95264644 chr13:95264643 synonymous SNV . 0 20 hm7G_associated_SNPs_7819 0 0 1 0 1 GPR180 chr13:95264644 5'GT 95264644 Upstream 2bp 7566 chr3 52831138 52831138 1 + T G SKCM 52831139 + 52831119 52831159 41 AGGGCCTCTGGGAGGAAGTTGGAGAAGTTCACAGTCTCGGT AGGGCCTCTGGGAGGAAGTGGGAGAAGTTCACAGTCTCGGT < 41bp 0.842460059560711 0.56080596544118 NA NA prediction 0.563308188239063 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52831139 chr3:52831138 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7820 0 0 1 0 1 ITIH3 chr3:52831121 3'AG 52831121 Downstream 18bp 7567 chrX 106093514 106093514 1 + T G SKCM 106093515 + 106093495 106093535 41 TGCTGACTTGTAAAGATGATGCTGAAGCTGTGACAGCCTTA TGCTGACTTGTAAAGATGAGGCTGAAGCTGTGACAGCCTTA < 41bp 0.798685809182521 0.517073325486629 NA NA prediction 0.563224967391783 Functional Loss - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106093515 chrX:106093514 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7821 0 0 0 0 1 TBC1D8B chrX:106093540 5'GT 106093540 Upstream 27bp 7568 chr2 211447348 211447348 1 + T G OV 211447349 + 211447329 211447369 41 TTAATTTGATAGGGTACCATGCTTGGGAAGATTGAATTTGA TTAATTTGATAGGGTACCAGGCTTGGGAAGATTGAATTTGA < 41bp 0.781587641359132 0.476872103396618 NA NA prediction 0.563175282718263 Functional Loss - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211447349 chr2:211447348 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7822 0 0 1 0 1 CPS1 chr2:211447433 5'GT 211447433 Upstream 86bp 7569 chr9 82336733 82336733 1 + T G UCEC 82336734 + 82336714 82336754 41 AAGCTCTGGACAGGTGGTTTGGACAACACGGTCAGGTCCTG AAGCTCTGGACAGGTGGTTGGGACAACACGGTCAGGTCCTG < 41bp 0.857517011744568 0.575973132760142 NA NA prediction 0.563087757968851 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82336734 chr9:82336733 nonsynonymous SNV 0.733 4 20 hm7G_associated_SNPs_7823 0 0 1 0 2 TLE4 chr9:82336656 3'AG 82336656 Downstream 78bp 7570 chr9 82336733 82336733 1 + T G UCEC 82336734 + 82336714 82336754 41 AAGCTCTGGACAGGTGGTTTGGACAACACGGTCAGGTCCTG AAGCTCTGGACAGGTGGTTGGGACAACACGGTCAGGTCCTG < 41bp 0.857517011744568 0.575973132760142 NA NA prediction 0.563087757968851 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82336734 chr9:82336733 nonsynonymous SNV 0.733 4 20 hm7G_associated_SNPs_7823 0 0 1 0 2 TLE4 chr9:82336803 5'GT 82336803 Upstream 71bp 7571 chr1 22310718 22310718 1 + T G rs148974518 22310719 + 22310699 22310739 41 GACAAGCTGCAGGAGGCCCTGCTGCCGGTGGTGGACTATGA GACAAGCTGCAGGAGGCCCGGCTGCCGGTGGTGGACTATGA < 41bp 0.781412276191336 0.485944131718134 NA NA prediction 0.562824552382671 Functional Loss - CELA3B ENSG00000219073 CDS Human protein_coding chr1:22310719 chr1:22310718 nonsynonymous SNV 0.932 1 20 hm7G_associated_SNPs_7825 0 0 0 0 1 CELA3B chr1:22310682 3'AG 22310682 Downstream 37bp 7572 chr17 26821496 26821496 1 + T G SKCM 26821497 + 26821477 26821517 41 TGGAATATCGTGTTATTGCTGGGTGGTGGCTATGCCCTGGC TGGAATATCGTGTTATTGCGGGGTGGTGGCTATGCCCTGGC < 41bp 0.850318215006222 0.5689086070585 NA NA prediction 0.562819215895444 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26821497 chr17:26821496 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_7826 0 0 0 0 2 SLC13A2 chr17:26821409 3'AG 26821409 Downstream 88bp 7573 chr17 26821496 26821496 1 + T G SKCM 26821497 + 26821477 26821517 41 TGGAATATCGTGTTATTGCTGGGTGGTGGCTATGCCCTGGC TGGAATATCGTGTTATTGCGGGGTGGTGGCTATGCCCTGGC < 41bp 0.850318215006222 0.5689086070585 NA NA prediction 0.562819215895444 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26821497 chr17:26821496 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_7826 0 0 0 0 2 SLC13A2 chr17:26821530 5'GT 26821530 Upstream 35bp 7574 chr18 48447542 48447542 1 + T G HNSC 48447543 + 48447523 48447563 41 TCTGGATGTTTGACAAGTATGGTTTATTAGTTAAGGTAAGG TCTGGATGTTTGACAAGTAGGGTTTATTAGTTAAGGTAAGG < 41bp 0.78137269742841 0.469076145334751 NA NA prediction 0.562745394856819 Functional Loss - ME2 ENSG00000082212 CDS Human protein_coding chr18:48447543 chr18:48447542 stopgain 0.998 0 20 hm7G_associated_SNPs_7827 0 0 0 0 2 ME2 chr18:48447444 3'AG 48447444 Downstream 99bp 7575 chr18 48447542 48447542 1 + T G HNSC 48447543 + 48447523 48447563 41 TCTGGATGTTTGACAAGTATGGTTTATTAGTTAAGGTAAGG TCTGGATGTTTGACAAGTAGGGTTTATTAGTTAAGGTAAGG < 41bp 0.78137269742841 0.469076145334751 NA NA prediction 0.562745394856819 Functional Loss - ME2 ENSG00000082212 CDS Human protein_coding chr18:48447543 chr18:48447542 stopgain 0.998 0 20 hm7G_associated_SNPs_7827 0 0 0 0 2 ME2 chr18:48447557 5'GT 48447557 Upstream 16bp 7576 chr4 174219421 174219421 1 + T G COAD 174219422 + 174219402 174219442 41 ACCCCTCAAGAGAAGAGACTGAGAAAGACAAAAACTGAACC ACCCCTCAAGAGAAGAGACGGAGAAAGACAAAAACTGAACC < 41bp 0.80765119668056 0.526310750497527 NA NA prediction 0.562680892366066 Functional Loss - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174219422 chr4:174219421 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_7828 0 0 1 0 1 GALNT7 chr4:174219448 5'GT 174219448 Upstream 28bp 7577 chrX 47070515 47070515 1 + T G COAD 47070516 + 47070496 47070536 41 CAGGCTCTCAGGACCGAGCTGCTGTGGCCACATTCCTGCAG CAGGCTCTCAGGACCGAGCGGCTGTGGCCACATTCCTGCAG < 41bp 0.856669478511551 0.575339412742746 NA NA prediction 0.562660131537609 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47070516 chrX:47070515 synonymous SNV . 0 20 hm7G_associated_SNPs_7829 0 0 1 0 1 UBA1 chrX:47070435 3'AG 47070435 Downstream 81bp 7578 chr6 126667370 126667370 1 + T G ACC 126667371 + 126667351 126667391 41 GTCCATCTGAACTGTTTACTGTTTGTTCATCGATTAGCAGA GTCCATCTGAACTGTTTACGGTTTGTTCATCGATTAGCAGA < 41bp 0.818484672924406 0.537189575359964 NA NA prediction 0.562590195128884 Functional Loss - CENPW ENSG00000203760 CDS Human protein_coding chr6:126667371 chr6:126667370 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_7831 0 0 1 6 2 CENPW chr6:126667351 3'AG 126667351 Downstream 20bp 7579 chr6 126667370 126667370 1 + T G ACC 126667371 + 126667351 126667391 41 GTCCATCTGAACTGTTTACTGTTTGTTCATCGATTAGCAGA GTCCATCTGAACTGTTTACGGTTTGTTCATCGATTAGCAGA < 41bp 0.818484672924406 0.537189575359964 NA NA prediction 0.562590195128884 Functional Loss - CENPW ENSG00000203760 CDS Human protein_coding chr6:126667371 chr6:126667370 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_7831 0 0 1 6 2 CENPW chr6:126667464 5'GT 126667464 Upstream 95bp 7580 chr6 18213914 18213914 1 + T G UCEC 18213915 + 18213895 18213935 41 GCAATTTCCGTATAGATTTTGGGACAGTAAAGTACAAGGGG GCAATTTCCGTATAGATTTGGGGACAGTAAAGTACAAGGGG < 41bp 0.830648803802581 0.549384544220752 NA NA prediction 0.562528519163657 Functional Loss - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213915 chr6:18213914 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_7833 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 28bp 7581 chr6 18213914 18213914 1 + T G UCEC 18213915 + 18213895 18213935 41 GCAATTTCCGTATAGATTTTGGGACAGTAAAGTACAAGGGG GCAATTTCCGTATAGATTTGGGGACAGTAAAGTACAAGGGG < 41bp 0.830648803802581 0.549384544220752 NA NA prediction 0.562528519163657 Functional Loss - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213915 chr6:18213914 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_7833 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 99bp 7582 chr17 8222397 8222397 1 + T G ESCA 8222398 + 8222378 8222418 41 AGCAGGTTCCGGATCCATCTGGACCCCCTACCTTCCGCCTC AGCAGGTTCCGGATCCATCGGGACCCCCTACCTTCCGCCTC < 41bp 0.781253408020758 0.440599423573967 NA NA prediction 0.562506816041516 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222398 chr17:8222397 synonymous SNV . 0 20 hm7G_associated_SNPs_7834 0 0 0 0 2 ARHGEF15 chr17:8222325 3'AG 8222325 Downstream 73bp 7583 chr17 8222397 8222397 1 + T G ESCA 8222398 + 8222378 8222418 41 AGCAGGTTCCGGATCCATCTGGACCCCCTACCTTCCGCCTC AGCAGGTTCCGGATCCATCGGGACCCCCTACCTTCCGCCTC < 41bp 0.781253408020758 0.440599423573967 NA NA prediction 0.562506816041516 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222398 chr17:8222397 synonymous SNV . 0 20 hm7G_associated_SNPs_7834 0 0 0 0 2 ARHGEF15 chr17:8222477 5'GT 8222477 Upstream 81bp 7584 chr18 61647120 61647120 1 + T G rs111432786 61647121 + 61647101 61647141 41 AGAACTGGCACTCAGTACTTGCTTAGAACTGCCAACAGACT AGAACTGGCACTCAGTACTGGCTTAGAACTGCCAACAGACT < 41bp 0.836378927222585 0.555132322992134 NA NA prediction 0.562493208460902 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61647121 chr18:61647120 nonsynonymous SNV 0.718 4 20 hm7G_associated_SNPs_7835 0 0 0 0 2 SERPINB8 chr18:61647035 3'AG 61647035 Downstream 86bp 7585 chr18 61647120 61647120 1 + T G rs111432786 61647121 + 61647101 61647141 41 AGAACTGGCACTCAGTACTTGCTTAGAACTGCCAACAGACT AGAACTGGCACTCAGTACTGGCTTAGAACTGCCAACAGACT < 41bp 0.836378927222585 0.555132322992134 NA NA prediction 0.562493208460902 Functional Loss - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61647121 chr18:61647120 nonsynonymous SNV 0.718 4 20 hm7G_associated_SNPs_7835 0 0 0 0 2 SERPINB8 chr18:61647172 5'GT 61647172 Upstream 53bp 7586 chr2 102818122 102818122 1 + T G LGG 102818123 + 102818103 102818143 41 TACGCGTGTCAAGCCATACTGACACACTCAGGGAAGCAGTA TACGCGTGTCAAGCCATACGGACACACTCAGGGAAGCAGTA < 41bp 0.844767738198037 0.563524417391698 NA NA prediction 0.562486641612679 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102818123 chr2:102818122 nonsynonymous SNV 0.015 4 20 hm7G_associated_SNPs_7837 0 0 0 0 1 IL1RL2 chr2:102818175 5'GT 102818175 Upstream 54bp 7587 chr22 42172170 42172170 1 + T G LUSC 42172171 + 42172151 42172191 41 ATTAGCCTGAGGACCTTCCTGAGGAGGAATGAGGATATCCA ATTAGCCTGAGGACCTTCCGGAGGAGGAATGAGGATATCCA < 41bp 0.781177386224677 0.468170954651145 NA NA prediction 0.562354772449354 Functional Loss - MEI1 ENSG00000167077 CDS Human protein_coding chr22:42172171 chr22:42172170 nonsynonymous SNV 0.158 4 20 hm7G_associated_SNPs_7838 0 0 0 1 1 MEI1 chr22:42172106 3'AG 42172106 Downstream 65bp 7588 chr4 8305971 8305971 1 + T G UCEC 8305972 + 8305952 8305992 41 AGGTCAGCAGTGGAATTTATGTGCAAGAGGTTGCGCCGAAT AGGTCAGCAGTGGAATTTAGGTGCAAGAGGTTGCGCCGAAT < 41bp 0.836889468940762 0.555742177957475 NA NA prediction 0.562294581966573 Functional Loss - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8305972 chr4:8305971 stopgain 0.994 1 20 hm7G_associated_SNPs_7839 0 0 0 0 2 HTRA3 chr4:8305911 3'AG 8305911 Downstream 61bp 7589 chr4 8305971 8305971 1 + T G UCEC 8305972 + 8305952 8305992 41 AGGTCAGCAGTGGAATTTATGTGCAAGAGGTTGCGCCGAAT AGGTCAGCAGTGGAATTTAGGTGCAAGAGGTTGCGCCGAAT < 41bp 0.836889468940762 0.555742177957475 NA NA prediction 0.562294581966573 Functional Loss - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8305972 chr4:8305971 stopgain 0.994 1 20 hm7G_associated_SNPs_7839 0 0 0 0 2 HTRA3 chr4:8306006 5'GT 8306006 Upstream 36bp 7590 chr18 3457366 3457366 1 + T G COAD 3457367 + 3457347 3457387 41 ACCGATATGATTTCAGGTCTGTAACTGGTTCATCAACGCCC ACCGATATGATTTCAGGTCGGTAACTGGTTCATCAACGCCC < 41bp 0.797775854316984 0.516663738236459 NA NA prediction 0.562224232161052 Functional Loss - TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3457367 chr18:3457366 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7842 0 0 1 0 1 TGIF1 chr18:3457363 3'AG 3457363 Downstream 4bp 7591 chr12 54677633 54677633 1 + T G UCEC 54677634 + 54677614 54677654 41 GTGGAAGCTACAATGATTTTGGGAATTACAACAATCAGTCT GTGGAAGCTACAATGATTTGGGGAATTACAACAATCAGTCT < 41bp 0.832186656758809 0.551114230852328 NA NA prediction 0.562144851812962 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54677634 chr12:54677633 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7844 0 0 1 0 2 HNRNPA1 chr12:54677596 3'AG 54677596 Downstream 38bp 7592 chr12 54677633 54677633 1 + T G UCEC 54677634 + 54677614 54677654 41 GTGGAAGCTACAATGATTTTGGGAATTACAACAATCAGTCT GTGGAAGCTACAATGATTTGGGGAATTACAACAATCAGTCT < 41bp 0.832186656758809 0.551114230852328 NA NA prediction 0.562144851812962 Functional Loss - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54677634 chr12:54677633 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7844 0 0 1 0 2 HNRNPA1 chr12:54677611 3'AG 54677611 Downstream 23bp 7593 chr10 65358935 65358935 1 + T G UCEC 65358936 + 65358916 65358956 41 GCTTTTTCCCCCAGGAGATTGATGATTATATTGTACAAGCA GCTTTTTCCCCCAGGAGATGGATGATTATATTGTACAAGCA < 41bp 0.814757481656461 0.53369593458236 NA NA prediction 0.562123094148204 Functional Loss - REEP3 ENSG00000165476 CDS Human protein_coding chr10:65358936 chr10:65358935 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_7845 0 0 1 0 1 REEP3 chr10:65358930 3'AG 65358930 Downstream 6bp 7594 chr5 76342465 76342465 1 + T G SKCM 76342466 + 76342446 76342486 41 ATGACGAAGCCATTACCAGTGAAGGCAATGTAACTGCAGAA ATGACGAAGCCATTACCAGGGAAGGCAATGTAACTGCAGAA < 41bp 0.781054203378364 0.471523253063224 NA NA prediction 0.562108406756728 Functional Loss - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76342466 chr5:76342465 nonsynonymous SNV 0.280 3 20 hm7G_associated_SNPs_7846 0 0 1 0 1 AGGF1 chr5:76342502 5'GT 76342502 Upstream 38bp 7595 chr11 8933006 8933006 1 + T G UCEC 8933007 + 8932987 8933027 41 TCAGGGAGCCATGGACAACTGTTTGGCGGCCGCAGCGCTGA TCAGGGAGCCATGGACAACGGTTTGGCGGCCGCAGCGCTGA < 41bp 0.813379687308834 0.532339127565198 NA NA prediction 0.562081119487271 Functional Loss - AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8933007 chr11:8933006 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_7847 0 0 1 0 1 AKIP1 chr11:8932991 3'AG 8932991 Downstream 16bp 7596 chr4 128577864 128577864 1 + T G SKCM 128577865 + 128577845 128577885 41 GAGTTCTGTCTTGCATTCCTGGACCTATGCAGGTATGGACA GAGTTCTGTCTTGCATTCCGGGACCTATGCAGGTATGGACA < 41bp 0.82350483839443 0.542481506912353 NA NA prediction 0.562046662964155 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128577865 chr4:128577864 synonymous SNV . 0 20 hm7G_associated_SNPs_7848 0 0 0 0 2 INTU chr4:128577791 3'AG 128577791 Downstream 74bp 7597 chr4 128577864 128577864 1 + T G SKCM 128577865 + 128577845 128577885 41 GAGTTCTGTCTTGCATTCCTGGACCTATGCAGGTATGGACA GAGTTCTGTCTTGCATTCCGGGACCTATGCAGGTATGGACA < 41bp 0.82350483839443 0.542481506912353 NA NA prediction 0.562046662964155 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128577865 chr4:128577864 synonymous SNV . 0 20 hm7G_associated_SNPs_7848 0 0 0 0 2 INTU chr4:128577876 5'GT 128577876 Upstream 13bp 7598 chr6 41010786 41010786 1 + T G OV 41010787 + 41010767 41010807 41 GGGCCCATCCTGGTCTGGCTGTTCACTCGTGATCACATGTC GGGCCCATCCTGGTCTGGCGGTTCACTCGTGATCACATGTC < 41bp 0.838534246217848 0.557522728454504 NA NA prediction 0.562023035526688 Functional Loss - TSPO2 ENSG00000112212 CDS Human protein_coding chr6:41010787 chr6:41010786 nonsynonymous SNV 0.722 1 20 hm7G_associated_SNPs_7849 0 0 0 0 1 TSPO2 chr6:41010705 3'AG 41010705 Downstream 82bp 7599 chr9 135930121 135930121 1 + T G LUSC 135930122 + 135930102 135930142 41 GCCAGCTTGTCACCATGCATGACCTGAAGCAGGGCCTGGGC GCCAGCTTGTCACCATGCAGGACCTGAAGCAGGGCCTGGGC < 41bp 0.836138948567832 0.555199942382376 NA NA prediction 0.561878012370913 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135930122 chr9:135930121 nonsynonymous SNV 0.949 0 20 hm7G_associated_SNPs_7852 0 0 1 0 2 GTF3C5 chr9:135930099 3'AG 135930099 Downstream 23bp 7600 chr9 135930121 135930121 1 + T G LUSC 135930122 + 135930102 135930142 41 GCCAGCTTGTCACCATGCATGACCTGAAGCAGGGCCTGGGC GCCAGCTTGTCACCATGCAGGACCTGAAGCAGGGCCTGGGC < 41bp 0.836138948567832 0.555199942382376 NA NA prediction 0.561878012370913 Functional Loss - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135930122 chr9:135930121 nonsynonymous SNV 0.949 0 20 hm7G_associated_SNPs_7852 0 0 1 0 2 GTF3C5 chr9:135930196 5'GT 135930196 Upstream 76bp 7601 chr3 179096173 179096173 1 + T G UCEC 179096174 + 179096154 179096194 41 GTATGGGAAGAAATTTGGCTGATCGATGCACCGATGAAGTA GTATGGGAAGAAATTTGGCGGATCGATGCACCGATGAAGTA < 41bp 0.832651611708625 0.551799204686927 NA NA prediction 0.561704814043395 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179096174 chr3:179096173 synonymous SNV . 0 20 hm7G_associated_SNPs_7854 0 0 1 0 2 MFN1 chr3:179096129 3'AG 179096129 Downstream 45bp 7602 chr3 179096173 179096173 1 + T G UCEC 179096174 + 179096154 179096194 41 GTATGGGAAGAAATTTGGCTGATCGATGCACCGATGAAGTA GTATGGGAAGAAATTTGGCGGATCGATGCACCGATGAAGTA < 41bp 0.832651611708625 0.551799204686927 NA NA prediction 0.561704814043395 Functional Loss - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179096174 chr3:179096173 synonymous SNV . 0 20 hm7G_associated_SNPs_7854 0 0 1 0 2 MFN1 chr3:179096231 5'GT 179096231 Upstream 59bp 7603 chr8 86019616 86019616 1 + T G ESCA 86019617 + 86019597 86019637 41 TGCGGGGATGTATGCTTCATGGACAAAGGCTTGCAGAGGTA TGCGGGGATGTATGCTTCAGGGACAAAGGCTTGCAGAGGTA < 41bp 0.809301199586206 0.528513986821823 NA NA prediction 0.561574425528766 Functional Loss - LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86019617 chr8:86019616 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7856 0 0 1 0 1 LRRCC1 chr8:86019634 5'GT 86019634 Upstream 19bp 7604 chr16 57685113 57685113 1 + T G rs369887735 57685114 + 57685094 57685134 41 CAGCCTCTGCCTCCTCAGGTGCCCACGGCAGGGGCCACAGG CAGCCTCTGCCTCCTCAGGGGCCCACGGCAGGGGCCACAGG < 41bp 0.780783302128033 0.454719051458893 NA NA prediction 0.561566604256066 Functional Loss - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685114 chr16:57685113 nonsynonymous SNV 0.326 0 20 hm7G_associated_SNPs_7857 1 0 0 0 2 ADGRG1 chr16:57685097 3'AG 57685097 Downstream 17bp 7605 chr16 57685113 57685113 1 + T G rs369887735 57685114 + 57685094 57685134 41 CAGCCTCTGCCTCCTCAGGTGCCCACGGCAGGGGCCACAGG CAGCCTCTGCCTCCTCAGGGGCCCACGGCAGGGGCCACAGG < 41bp 0.780783302128033 0.454719051458893 NA NA prediction 0.561566604256066 Functional Loss - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685114 chr16:57685113 nonsynonymous SNV 0.326 0 20 hm7G_associated_SNPs_7857 1 0 0 0 2 ADGRG1 chr16:57685112 3'AG 57685112 Downstream 2bp 7606 chr6 126319758 126319758 1 + T G STAD 126319759 + 126319739 126319779 41 AACCGCAACATGTATTTTCTGTTTTGGAGGATTATGGTTTA AACCGCAACATGTATTTTCGGTTTTGGAGGATTATGGTTTA < 41bp 0.801287518681657 0.520542574373589 NA NA prediction 0.561489888616136 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126319759 chr6:126319758 synonymous SNV . 0 20 hm7G_associated_SNPs_7858 0 0 1 0 2 TRMT11 chr6:126319696 3'AG 126319696 Downstream 63bp 7607 chr6 126319758 126319758 1 + T G STAD 126319759 + 126319739 126319779 41 AACCGCAACATGTATTTTCTGTTTTGGAGGATTATGGTTTA AACCGCAACATGTATTTTCGGTTTTGGAGGATTATGGTTTA < 41bp 0.801287518681657 0.520542574373589 NA NA prediction 0.561489888616136 Functional Loss - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126319759 chr6:126319758 synonymous SNV . 0 20 hm7G_associated_SNPs_7858 0 0 1 0 2 TRMT11 chr6:126319830 5'GT 126319830 Upstream 73bp 7608 chr1 26110207 26110207 1 + T G UCEC 26110208 + 26110188 26110228 41 CTCTCCCTGGAAGACTGGGTGTTCAACACCGAGGCCCACCC CTCTCCCTGGAAGACTGGGGGTTCAACACCGAGGCCCACCC < 41bp 0.806781406933981 0.526037976700841 NA NA prediction 0.561486860466282 Functional Loss - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26110208 chr1:26110207 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7859 0 0 0 0 1 MAN1C1 chr1:26110154 3'AG 26110154 Downstream 54bp 7609 chr21 45711057 45711057 1 + T G UCEC 45711058 + 45711038 45711078 41 TGCCCTCGGGCCTTCCACCTGGCCTGCCTGTCCCCTCCGCT TGCCCTCGGGCCTTCCACCGGGCCTGCCTGTCCCCTCCGCT < 41bp 0.780724393290415 0.445993511312132 NA NA prediction 0.561448786580829 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711058 chr21:45711057 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_7861 0 0 0 0 2 AIRE chr21:45710978 3'AG 45710978 Downstream 80bp 7610 chr21 45711057 45711057 1 + T G UCEC 45711058 + 45711038 45711078 41 TGCCCTCGGGCCTTCCACCTGGCCTGCCTGTCCCCTCCGCT TGCCCTCGGGCCTTCCACCGGGCCTGCCTGTCCCCTCCGCT < 41bp 0.780724393290415 0.445993511312132 NA NA prediction 0.561448786580829 Functional Loss - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711058 chr21:45711057 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_7861 0 0 0 0 2 AIRE chr21:45711093 5'GT 45711093 Upstream 37bp 7611 chr2 61021257 61021257 1 + T G UCEC 61021258 + 61021238 61021278 41 TGTCAAATATAACTAAGACTGTTACACCTAAGAGATCCCAT TGTCAAATATAACTAAGACGGTTACACCTAAGAGATCCCAT < 41bp 0.830010926054955 0.549306832676068 NA NA prediction 0.561408186757774 Functional Loss - PAPOLG ENSG00000115421 CDS Human protein_coding chr2:61021258 chr2:61021257 synonymous SNV . 0 20 hm7G_associated_SNPs_7862 0 0 1 0 1 PAPOLG chr2:61021326 5'GT 61021326 Upstream 70bp 7612 chr1 231398569 231398569 1 + T G UCEC 231398570 + 231398550 231398590 41 CTTCTATACAATTATGATTTGCCTGTGCCAGTTATAGCAGC CTTCTATACAATTATGATTGGCCTGTGCCAGTTATAGCAGC < 41bp 0.780659241447339 0.47095618121307 NA NA prediction 0.561318482894678 Functional Loss - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231398570 chr1:231398569 nonsynonymous SNV 0.966 5 20 hm7G_associated_SNPs_7864 0 0 1 0 1 GNPAT chr1:231398598 5'GT 231398598 Upstream 30bp 7613 chr2 33745641 33745641 1 + T G LGG 33745642 + 33745622 33745662 41 ACTGGATTCTGAAGTTTCCTGCAGAGTTTAATTTGGATCTT ACTGGATTCTGAAGTTTCCGGCAGAGTTTAATTTGGATCTT < 41bp 0.780650803225658 0.461107092185647 NA NA prediction 0.561301606451317 Functional Loss - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33745642 chr2:33745641 synonymous SNV . 0 20 hm7G_associated_SNPs_7865 0 0 0 0 1 RASGRP3 chr2:33745620 3'AG 33745620 Downstream 22bp 7614 chr1 55063070 55063070 1 + T G SKCM 55063071 + 55063051 55063091 41 ATGGCCTGGATGGAGAATGTGGCCACCATTGCAGCCAGGTG ATGGCCTGGATGGAGAATGGGGCCACCATTGCAGCCAGGTG < 41bp 0.780574144570364 0.447661757483378 NA NA prediction 0.561148289140728 Functional Loss - ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55063071 chr1:55063070 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7867 0 0 0 0 1 ACOT11 chr1:55063088 5'GT 55063088 Upstream 19bp 7615 chr7 20698251 20698251 1 + T G rs78859324 20698252 + 20698232 20698272 41 TTTTAGATGAGGCTACGTCTGCCCTGGATTCAGAAAGCAAG TTTTAGATGAGGCTACGTCGGCCCTGGATTCAGAAAGCAAG < 41bp 0.83919840335065 0.558644707688708 NA NA prediction 0.561107391323885 Functional Loss - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20698252 chr7:20698251 synonymous SNV . 0 20 hm7G_associated_SNPs_7869 0 0 0 0 1 ABCB5 chr7:20698299 5'GT 20698299 Upstream 49bp 7616 chr2 143790821 143790821 1 + T G THCA 143790822 + 143790802 143790842 41 CAGAACTGCAGTTAATCCCTGGGGTCTGTGGATTCCGAATT CAGAACTGCAGTTAATCCCGGGGGTCTGTGGATTCCGAATT < 41bp 0.829841329847343 0.549346987926391 NA NA prediction 0.560988683841904 Functional Loss - KYNU ENSG00000115919 CDS Human protein_coding chr2:143790822 chr2:143790821 synonymous SNV . 0 20 hm7G_associated_SNPs_7870 0 0 0 0 2 KYNU chr2:143790805 3'AG 143790805 Downstream 17bp 7617 chr2 143790821 143790821 1 + T G THCA 143790822 + 143790802 143790842 41 CAGAACTGCAGTTAATCCCTGGGGTCTGTGGATTCCGAATT CAGAACTGCAGTTAATCCCGGGGGTCTGTGGATTCCGAATT < 41bp 0.829841329847343 0.549346987926391 NA NA prediction 0.560988683841904 Functional Loss - KYNU ENSG00000115919 CDS Human protein_coding chr2:143790822 chr2:143790821 synonymous SNV . 0 20 hm7G_associated_SNPs_7870 0 0 0 0 2 KYNU chr2:143790890 5'GT 143790890 Upstream 70bp 7618 chr11 3429936 3429936 1 + T G UCEC 3429937 + 3429917 3429957 41 TGCTTTTCTCAAACTTTCCTGATCCTGCGGGCAAGCTAAAC TGCTTTTCTCAAACTTTCCGGATCCTGCGGGCAAGCTAAAC < 41bp 0.780488252456365 0.475019142277957 NA NA prediction 0.560976504912731 Functional Loss - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3429937 chr11:3429936 . . 0 20 hm7G_associated_SNPs_7871 0 0 0 0 1 TSSC2 chr11:3429916 3'AG 3429916 Downstream 21bp 7619 chr14 31191711 31191711 1 + T G SKCM 31191712 + 31191692 31191732 41 CATTTTAGGCCATTGTTTTTGTGGTGGGAGGAGGCAACTAC CATTTTAGGCCATTGTTTTGGTGGTGGGAGGAGGCAACTAC < 41bp 0.803516009675607 0.523107999052025 NA NA prediction 0.560816021247163 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31191712 chr14:31191711 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7873 0 0 1 0 2 SCFD1 chr14:31191700 3'AG 31191700 Downstream 12bp 7620 chr14 31191711 31191711 1 + T G SKCM 31191712 + 31191692 31191732 41 CATTTTAGGCCATTGTTTTTGTGGTGGGAGGAGGCAACTAC CATTTTAGGCCATTGTTTTGGTGGTGGGAGGAGGCAACTAC < 41bp 0.803516009675607 0.523107999052025 NA NA prediction 0.560816021247163 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31191712 chr14:31191711 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7873 0 0 1 0 2 SCFD1 chr14:31191765 5'GT 31191765 Upstream 55bp 7621 chr1 62915935 62915935 1 + T G GBM 62915936 + 62915916 62915956 41 GGTTTGATTGTTATGGTGGTGGACTTTCCAAGATCAACACT GGTTTGATTGTTATGGTGGGGGACTTTCCAAGATCAACACT < 41bp 0.780383669298372 0.481600412627835 NA NA prediction 0.560767338596745 Functional Loss - USP1 ENSG00000162607 CDS Human protein_coding chr1:62915936 chr1:62915935 synonymous SNV . 0 20 hm7G_associated_SNPs_7874 0 0 1 0 1 USP1 chr1:62915917 3'AG 62915917 Downstream 19bp 7622 chr4 186997817 186997817 1 + T G rs149602022 186997818 + 186997798 186997838 41 TACTTTTGGGGGGGCCTTTTGCCCTTTGGGATGCTGTGTGC TACTTTTGGGGGGGCCTTTGGCCCTTTGGGATGCTGTGTGC < 41bp 0.822675132773958 0.542316695515135 NA NA prediction 0.560716874517647 Functional Loss - TLR3 ENSG00000164342 CDS Human protein_coding chr4:186997818 chr4:186997817 nonsynonymous SNV 0.018 1 20 hm7G_associated_SNPs_7876 0 0 0 0 1 TLR3 chr4:186997767 3'AG 186997767 Downstream 51bp 7623 chr10 118315585 118315585 1 + T G ACC 118315586 + 118315566 118315606 41 ATAGCATCGTCAACCCTGATGGCTTTGCTGGATTCCCCTGT ATAGCATCGTCAACCCTGAGGGCTTTGCTGGATTCCCCTGT < 41bp 0.780357763004935 0.459634003193458 NA NA prediction 0.56071552600987 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118315586 chr10:118315585 nonsynonymous SNV 0.278 1 20 hm7G_associated_SNPs_7877 0 0 0 0 2 PNLIP chr10:118315512 3'AG 118315512 Downstream 74bp 7624 chr10 118315585 118315585 1 + T G ACC 118315586 + 118315566 118315606 41 ATAGCATCGTCAACCCTGATGGCTTTGCTGGATTCCCCTGT ATAGCATCGTCAACCCTGAGGGCTTTGCTGGATTCCCCTGT < 41bp 0.780357763004935 0.459634003193458 NA NA prediction 0.56071552600987 Functional Loss - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118315586 chr10:118315585 nonsynonymous SNV 0.278 1 20 hm7G_associated_SNPs_7877 0 0 0 0 2 PNLIP chr10:118315630 5'GT 118315630 Upstream 46bp 7625 chr1 110231875 110231875 1 + T G COAD 110231876 + 110231856 110231896 41 CAGAAGAGGAGAAGATTCGTGTGGACATTTTGGAGAACCAG CAGAAGAGGAGAAGATTCGGGTGGACATTTTGGAGAACCAG < 41bp 0.842031611528328 0.561742684361466 NA NA prediction 0.560577854333724 Functional Loss - GSTM1 ENSG00000134184 CDS Human protein_coding chr1:110231876 chr1:110231875 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_7879 0 0 0 0 2 GSTM1 chr1:110231847 3'AG 110231847 Downstream 29bp 7626 chr1 110231875 110231875 1 + T G COAD 110231876 + 110231856 110231896 41 CAGAAGAGGAGAAGATTCGTGTGGACATTTTGGAGAACCAG CAGAAGAGGAGAAGATTCGGGTGGACATTTTGGAGAACCAG < 41bp 0.842031611528328 0.561742684361466 NA NA prediction 0.560577854333724 Functional Loss - GSTM1 ENSG00000134184 CDS Human protein_coding chr1:110231876 chr1:110231875 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_7879 0 0 0 0 2 GSTM1 chr1:110231947 5'GT 110231947 Upstream 73bp 7627 chr10 95259848 95259848 1 + T G LAML 95259849 + 95259829 95259869 41 AGATTTAATTAAAAGTAAGTGGGGATCGAAGCCTAGTAACT AGATTTAATTAAAAGTAAGGGGGGATCGAAGCCTAGTAACT < 41bp 0.820183801737508 0.539909505024743 NA NA prediction 0.56054859342553 Functional Loss - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95259849 chr10:95259848 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_7880 0 0 1 0 1 CEP55 chr10:95259797 3'AG 95259797 Downstream 52bp 7628 chr18 56348513 56348513 1 + T G UCEC 56348514 + 56348494 56348534 41 GCACAGTCACAGAATTGAGTGATTTCCTGCAGGCTATGGAA GCACAGTCACAGAATTGAGGGATTTCCTGCAGGCTATGGAA < 41bp 0.780268570460154 0.450331102431828 NA NA prediction 0.560537140920307 Functional Loss - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56348514 chr18:56348513 nonsynonymous SNV 0.975 0 20 hm7G_associated_SNPs_7881 0 0 1 0 1 MALT1 chr18:56348568 5'GT 56348568 Upstream 56bp 7629 chr22 36653147 36653147 1 + T G rs540252132 36653148 + 36653128 36653168 41 GGATGAGTGCACTTTTCCTTGGTGTGGGAGTGAGGGCAGAG GGATGAGTGCACTTTTCCTGGGTGTGGGAGTGAGGGCAGAG < 41bp 0.780220381711537 0.464588883125079 NA NA prediction 0.560440763423074 Functional Loss - APOL1 ENSG00000100342 CDS Human protein_coding chr22:36653148 chr22:36653147 synonymous SNV . 0 20 hm7G_associated_SNPs_7883 0 0 1 0 2 APOL1 chr22:36653129 3'AG 36653129 Downstream 19bp 7630 chr22 36653147 36653147 1 + T G rs540252132 36653148 + 36653128 36653168 41 GGATGAGTGCACTTTTCCTTGGTGTGGGAGTGAGGGCAGAG GGATGAGTGCACTTTTCCTGGGTGTGGGAGTGAGGGCAGAG < 41bp 0.780220381711537 0.464588883125079 NA NA prediction 0.560440763423074 Functional Loss - APOL1 ENSG00000100342 CDS Human protein_coding chr22:36653148 chr22:36653147 synonymous SNV . 0 20 hm7G_associated_SNPs_7883 0 0 1 0 2 APOL1 chr22:36653182 5'GT 36653182 Upstream 36bp 7631 chr7 44797058 44797058 1 + T G COAD 44797059 + 44797039 44797079 41 TCACGCAAGCGGCAGCTGCTGCAGCTGTGGCTGCTGCGGCA TCACGCAAGCGGCAGCTGCGGCAGCTGTGGCTGCTGCGGCA < 41bp 0.865427309511226 0.585255351351027 NA NA prediction 0.560343916320398 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44797059 chr7:44797058 synonymous SNV . 0 20 hm7G_associated_SNPs_7884 0 0 1 0 1 ZMIZ2 chr7:44796977 3'AG 44796977 Downstream 82bp 7632 chr17 73519828 73519828 1 + T G BRCA 73519829 + 73519809 73519849 41 CATTCCGAAAGAATAACCCTGGCAAACCCTATGCCCGGATG CATTCCGAAAGAATAACCCGGGCAAACCCTATGCCCGGATG < 41bp 0.856288262197493 0.576210940414379 NA NA prediction 0.560154643566228 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73519829 chr17:73519828 synonymous SNV . 0 20 hm7G_associated_SNPs_7887 0 0 1 0 2 TSEN54 chr17:73519744 3'AG 73519744 Downstream 85bp 7633 chr17 73519828 73519828 1 + T G BRCA 73519829 + 73519809 73519849 41 CATTCCGAAAGAATAACCCTGGCAAACCCTATGCCCGGATG CATTCCGAAAGAATAACCCGGGCAAACCCTATGCCCGGATG < 41bp 0.856288262197493 0.576210940414379 NA NA prediction 0.560154643566228 Functional Loss - TSEN54 ENSG00000182173 CDS Human protein_coding chr17:73519829 chr17:73519828 synonymous SNV . 0 20 hm7G_associated_SNPs_7887 0 0 1 0 2 TSEN54 chr17:73519860 5'GT 73519860 Upstream 33bp 7634 chr10 127530320 127530320 1 - A C LUAD 127530319 - 127530299 127530339 41 GTGCTAACAATCGCAGCCATGGTAACAGGTATCCTTAATGA GTGCTAACAATCGCAGCCAGGGTAACAGGTATCCTTAATGA < 41bp 0.835625861355964 0.555562961293588 NA NA prediction 0.560125800124752 Functional Loss - DHX32 ENSG00000089876 CDS Human protein_coding chr10:127530319 chr10:127530320 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7888 0 0 0 0 1 DHX32 chr10:127530312 5'GT 127530312 Upstream 9bp 7635 chr19 54396638 54396638 1 + T G COAD 54396639 + 54396619 54396659 41 TGTAACTACCCCCTGGAATTGTATGAGGTGAGTAGAACCAG TGTAACTACCCCCTGGAATGGTATGAGGTGAGTAGAACCAG < 41bp 0.847312681374173 0.567294262986962 NA NA prediction 0.560036836774422 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54396639 chr19:54396638 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_7889 0 0 0 0 2 PRKCG chr19:54396616 3'AG 54396616 Downstream 23bp 7636 chr19 54396638 54396638 1 + T G COAD 54396639 + 54396619 54396659 41 TGTAACTACCCCCTGGAATTGTATGAGGTGAGTAGAACCAG TGTAACTACCCCCTGGAATGGTATGAGGTGAGTAGAACCAG < 41bp 0.847312681374173 0.567294262986962 NA NA prediction 0.560036836774422 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54396639 chr19:54396638 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_7889 0 0 0 0 2 PRKCG chr19:54396645 5'GT 54396645 Upstream 8bp 7637 chr1 23385584 23385584 1 + T G OV 23385585 + 23385565 23385605 41 GGAGGGAATCCTATGGCTGTGGTCAGCAAACAAGTAAATAT GGAGGGAATCCTATGGCTGGGGTCAGCAAACAAGTAAATAT < 41bp 0.779749564531679 0.458787635053182 NA NA prediction 0.559499129063358 Functional Loss - KDM1A ENSG00000004487 CDS Human protein_coding chr1:23385585 chr1:23385584 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7895 0 0 1 0 2 KDM1A chr1:23385566 3'AG 23385566 Downstream 19bp 7638 chr1 23385584 23385584 1 + T G OV 23385585 + 23385565 23385605 41 GGAGGGAATCCTATGGCTGTGGTCAGCAAACAAGTAAATAT GGAGGGAATCCTATGGCTGGGGTCAGCAAACAAGTAAATAT < 41bp 0.779749564531679 0.458787635053182 NA NA prediction 0.559499129063358 Functional Loss - KDM1A ENSG00000004487 CDS Human protein_coding chr1:23385585 chr1:23385584 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7895 0 0 1 0 2 KDM1A chr1:23385660 5'GT 23385660 Upstream 77bp 7639 chr15 68468052 68468052 1 + T G COAD 68468053 + 68468033 68468073 41 GATGGCACTTGGGCACCGATGAGATCAAAAAAGGAAGTACA GATGGCACTTGGGCACCGAGGAGATCAAAAAAGGAAGTACA < 41bp 0.838190247469026 0.558441139506435 NA NA prediction 0.559498215925182 Functional Loss - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68468053 chr15:68468052 nonsynonymous SNV 0.972 2 20 hm7G_associated_SNPs_7896 0 0 1 0 2 PIAS1 chr15:68467975 3'AG 68467975 Downstream 78bp 7640 chr15 68468052 68468052 1 + T G COAD 68468053 + 68468033 68468073 41 GATGGCACTTGGGCACCGATGAGATCAAAAAAGGAAGTACA GATGGCACTTGGGCACCGAGGAGATCAAAAAAGGAAGTACA < 41bp 0.838190247469026 0.558441139506435 NA NA prediction 0.559498215925182 Functional Loss - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68468053 chr15:68468052 nonsynonymous SNV 0.972 2 20 hm7G_associated_SNPs_7896 0 0 1 0 2 PIAS1 chr15:68468105 5'GT 68468105 Upstream 54bp 7641 chr2 181925530 181925530 1 + T G UCEC 181925531 + 181925511 181925551 41 TTGTTCCCTTTTGACAGACTGCAACCCTGGTAAGCAAATCT TTGTTCCCTTTTGACAGACGGCAACCCTGGTAAGCAAATCT < 41bp 0.820762761380664 0.541032272658292 NA NA prediction 0.559460977444744 Functional Loss - UBE2E3 ENSG00000170035 CDS Human protein_coding chr2:181925531 chr2:181925530 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7897 0 0 1 0 1 UBE2E3 chr2:181925539 5'GT 181925539 Upstream 10bp 7642 chr10 22607754 22607754 1 + T G LIHC 22607755 + 22607735 22607775 41 ACCAATCAACTTCATAGGATGTACAGACCTGCATATTTGGT ACCAATCAACTTCATAGGAGGTACAGACCTGCATATTTGGT < 41bp 0.790539374452901 0.510909134764811 NA NA prediction 0.55926047937618 Functional Loss - COMMD3 ENSG00000148444 CDS Human protein_coding chr10:22607755 chr10:22607754 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7899 0 0 1 0 2 COMMD3 chr10:22607735 3'AG 22607735 Downstream 20bp 7643 chr10 22607754 22607754 1 + T G LIHC 22607755 + 22607735 22607775 41 ACCAATCAACTTCATAGGATGTACAGACCTGCATATTTGGT ACCAATCAACTTCATAGGAGGTACAGACCTGCATATTTGGT < 41bp 0.790539374452901 0.510909134764811 NA NA prediction 0.55926047937618 Functional Loss - COMMD3 ENSG00000148444 CDS Human protein_coding chr10:22607755 chr10:22607754 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_7899 0 0 1 0 2 COMMD3 chr10:22607791 5'GT 22607791 Upstream 38bp 7644 chr14 56130701 56130701 1 + T G SKCM 56130702 + 56130682 56130722 41 GAGAAAAACTGGGAAGCAATGGAAGCATTGGCATCAACTGA GAGAAAAACTGGGAAGCAAGGGAAGCATTGGCATCAACTGA < 41bp 0.795091708686192 0.515552325055792 NA NA prediction 0.5590787672608 Functional Loss - KTN1 ENSG00000126777 CDS Human protein_coding chr14:56130702 chr14:56130701 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7903 0 0 1 0 2 KTN1 chr14:56130673 3'AG 56130673 Downstream 29bp 7645 chr14 56130701 56130701 1 + T G SKCM 56130702 + 56130682 56130722 41 GAGAAAAACTGGGAAGCAATGGAAGCATTGGCATCAACTGA GAGAAAAACTGGGAAGCAAGGGAAGCATTGGCATCAACTGA < 41bp 0.795091708686192 0.515552325055792 NA NA prediction 0.5590787672608 Functional Loss - KTN1 ENSG00000126777 CDS Human protein_coding chr14:56130702 chr14:56130701 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7903 0 0 1 0 2 KTN1 chr14:56130759 5'GT 56130759 Upstream 59bp 7646 chr8 41355157 41355157 1 + T G UCEC 41355158 + 41355138 41355178 41 AGCATATACCATCTTCCTATGCATGGAAACTCATTATGAGA AGCATATACCATCTTCCTAGGCATGGAAACTCATTATGAGA < 41bp 0.779417283107565 0.48797856415216 NA NA prediction 0.55883456621513 Functional Loss - GOLGA7 ENSG00000147533 CDS Human protein_coding chr8:41355158 chr8:41355157 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7905 0 0 1 1 1 GOLGA7 chr8:41355180 5'GT 41355180 Upstream 24bp 7647 chr18 29172884 29172884 1 + T G CHOL 29172885 + 29172865 29172905 41 GGTGAATCCAAGTGTCCTCTGATGGTCAAAGTTCTAGATGC GGTGAATCCAAGTGTCCTCGGATGGTCAAAGTTCTAGATGC < 41bp 0.836628115400859 0.557416409691208 NA NA prediction 0.558423411419301 Functional Loss - TTR ENSG00000118271 CDS Human protein_coding chr18:29172885 chr18:29172884 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7908 0 0 1 0 1 TTR chr18:29172859 3'AG 29172859 Downstream 26bp 7648 chr3 38523720 38523720 1 + T G COAD 38523721 + 38523701 38523741 41 CGGTACATGGCTCCTGAGGTGCTCGAGGGAGCCATCAACTT CGGTACATGGCTCCTGAGGGGCTCGAGGGAGCCATCAACTT < 41bp 0.843272787690168 0.564100305558148 NA NA prediction 0.558344964264041 Functional Loss - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38523721 chr3:38523720 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_7909 0 0 1 0 1 ACVR2B chr3:38523689 3'AG 38523689 Downstream 32bp 7649 chr7 23212573 23212573 1 + T G BRCA 23212574 + 23212554 23212594 41 TTAATTTTTTCAGATGGACTGAGCTGTGTCCAATGATTGAA TTAATTTTTTCAGATGGACGGAGCTGTGTCCAATGATTGAA < 41bp 0.820017760262079 0.540945052759809 NA NA prediction 0.558145415004539 Functional Loss - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23212574 chr7:23212573 synonymous SNV . 0 20 hm7G_associated_SNPs_7911 0 0 1 0 2 KLHL7 chr7:23212567 3'AG 23212567 Downstream 7bp 7650 chr7 23212573 23212573 1 + T G BRCA 23212574 + 23212554 23212594 41 TTAATTTTTTCAGATGGACTGAGCTGTGTCCAATGATTGAA TTAATTTTTTCAGATGGACGGAGCTGTGTCCAATGATTGAA < 41bp 0.820017760262079 0.540945052759809 NA NA prediction 0.558145415004539 Functional Loss - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23212574 chr7:23212573 synonymous SNV . 0 20 hm7G_associated_SNPs_7911 0 0 1 0 2 KLHL7 chr7:23212664 5'GT 23212664 Upstream 92bp 7651 chr6 131540885 131540885 1 + T G CESC 131540886 + 131540866 131540906 41 ATTATATCGCATAGATCTTTGCTCCATGCTGAAGAAAAAAC ATTATATCGCATAGATCTTGGCTCCATGCTGAAGAAAAAAC < 41bp 0.831929805326587 0.552860431383845 NA NA prediction 0.558138747885484 Functional Loss - AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131540886 chr6:131540885 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7912 0 0 0 0 2 AKAP7 chr6:131540801 3'AG 131540801 Downstream 85bp 7652 chr6 131540885 131540885 1 + T G CESC 131540886 + 131540866 131540906 41 ATTATATCGCATAGATCTTTGCTCCATGCTGAAGAAAAAAC ATTATATCGCATAGATCTTGGCTCCATGCTGAAGAAAAAAC < 41bp 0.831929805326587 0.552860431383845 NA NA prediction 0.558138747885484 Functional Loss - AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131540886 chr6:131540885 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7912 0 0 0 0 2 AKAP7 chr6:131540948 5'GT 131540948 Upstream 64bp 7653 chr2 238671267 238671267 1 + T G OV 238671268 + 238671248 238671288 41 AGAGCCAGTGAAGTGGAGGTGAAAAATGAAATCGTGGCGAA AGAGCCAGTGAAGTGGAGGGGAAAAATGAAATCGTGGCGAA < 41bp 0.779041512830303 0.485871330843166 NA NA prediction 0.558083025660606 Functional Loss - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238671268 chr2:238671267 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7913 0 0 1 0 1 LRRFIP1 chr2:238671246 3'AG 238671246 Downstream 22bp 7654 chr2 204137434 204137434 1 + T G LUSC 204137435 + 204137415 204137455 41 GCTTTCTAGATGGGTCACTTGATAAAAACATGACTCGGAAA GCTTTCTAGATGGGTCACTGGATAAAAACATGACTCGGAAA < 41bp 0.77902149425137 0.462941428769705 NA NA prediction 0.55804298850274 Functional Loss - CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204137435 chr2:204137434 synonymous SNV . 0 20 hm7G_associated_SNPs_7915 0 0 0 0 3 CYP20A1 chr2:204137369 3'AG 204137369 Downstream 66bp 7655 chr2 204137434 204137434 1 + T G LUSC 204137435 + 204137415 204137455 41 GCTTTCTAGATGGGTCACTTGATAAAAACATGACTCGGAAA GCTTTCTAGATGGGTCACTGGATAAAAACATGACTCGGAAA < 41bp 0.77902149425137 0.462941428769705 NA NA prediction 0.55804298850274 Functional Loss - CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204137435 chr2:204137434 synonymous SNV . 0 20 hm7G_associated_SNPs_7915 0 0 0 0 3 CYP20A1 chr2:204137393 3'AG 204137393 Downstream 42bp 7656 chr2 204137434 204137434 1 + T G LUSC 204137435 + 204137415 204137455 41 GCTTTCTAGATGGGTCACTTGATAAAAACATGACTCGGAAA GCTTTCTAGATGGGTCACTGGATAAAAACATGACTCGGAAA < 41bp 0.77902149425137 0.462941428769705 NA NA prediction 0.55804298850274 Functional Loss - CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204137435 chr2:204137434 synonymous SNV . 0 20 hm7G_associated_SNPs_7915 0 0 0 0 3 CYP20A1 chr2:204137471 5'GT 204137471 Upstream 38bp 7657 chr16 14022002 14022002 1 + T G UCEC 14022003 + 14021983 14022023 41 CTATACTGGACATTTTAAATGCATGTCTAAAGGAACTAAAA CTATACTGGACATTTTAAAGGCATGTCTAAAGGAACTAAAA < 41bp 0.778970155259916 0.480777146985466 NA NA prediction 0.557940310519833 Functional Loss - ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14022003 chr16:14022002 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_7919 0 0 1 0 1 ERCC4 chr16:14022092 5'GT 14022092 Upstream 91bp 7658 chr8 30942735 30942735 1 + T G UCEC 30942736 + 30942716 30942756 41 CCTATGTAATTGAGAGTGATGAAGATTTAGAAATGGAGATG CCTATGTAATTGAGAGTGAGGAAGATTTAGAAATGGAGATG < 41bp 0.823901137395895 0.544961995719777 NA NA prediction 0.557878283352235 Functional Loss - WRN ENSG00000165392 CDS Human protein_coding chr8:30942736 chr8:30942735 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_7921 0 0 0 0 1 WRN chr8:30942682 3'AG 30942682 Downstream 54bp 7659 chr10 106019370 106019370 1 + T G UCEC 106019371 + 106019351 106019391 41 TCAACCTGAAAAATAAGCCTGAGTGGTTCTTTAAGAAAAAT TCAACCTGAAAAATAAGCCGGAGTGGTTCTTTAAGAAAAAT < 41bp 0.8352630758476 0.55633455361844 NA NA prediction 0.55785704445832 Functional Loss - GSTO1 ENSG00000148834 CDS Human protein_coding chr10:106019371 chr10:106019370 synonymous SNV . 0 20 hm7G_associated_SNPs_7922 0 0 1 0 1 GSTO1 chr10:106019334 3'AG 106019334 Downstream 37bp 7660 chr19 34824610 34824610 1 + T G MESO 34824611 + 34824591 34824631 41 TTTTTTTTTCGATCTTAGGTGGTGGTTGACACAGCACAGAT TTTTTTTTTCGATCTTAGGGGGTGGTTGACACAGCACAGAT < 41bp 0.778843829464286 0.464344847146111 NA NA prediction 0.557687658928572 Functional Loss - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34824611 chr19:34824610 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_7923 0 0 0 0 2 KIAA0355 chr19:34824609 3'AG 34824609 Downstream 2bp 7661 chr19 34824610 34824610 1 + T G MESO 34824611 + 34824591 34824631 41 TTTTTTTTTCGATCTTAGGTGGTGGTTGACACAGCACAGAT TTTTTTTTTCGATCTTAGGGGGTGGTTGACACAGCACAGAT < 41bp 0.778843829464286 0.464344847146111 NA NA prediction 0.557687658928572 Functional Loss - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34824611 chr19:34824610 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_7923 0 0 0 0 2 KIAA0355 chr19:34824706 5'GT 34824706 Upstream 97bp 7662 chr1 114128166 114128166 1 + T G BLCA 114128167 + 114128147 114128187 41 GAATGGATAGCTCTCTTCCTGAAGAGGAAGAAGATGAGGAC GAATGGATAGCTCTCTTCCGGAAGAGGAAGAAGATGAGGAC < 41bp 0.832850714652444 0.554262109387734 NA NA prediction 0.557177210529419 Functional Loss - MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114128167 chr1:114128166 synonymous SNV . 0 20 hm7G_associated_SNPs_7927 0 0 1 0 1 MAGI3 chr1:114128218 5'GT 114128218 Upstream 53bp 7663 chr11 9459633 9459633 1 + T G STAD 9459634 + 9459614 9459654 41 TTTTTTTTTTTAGGCTTCATGACAGAAAGATGTGTGTTCTC TTTTTTTTTTTAGGCTTCAGGACAGAAAGATGTGTGTTCTC < 41bp 0.778496844845698 0.497350188280965 NA NA prediction 0.556993689691397 Functional Loss - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9459634 chr11:9459633 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_7928 0 0 1 0 1 IPO7 chr11:9459627 3'AG 9459627 Downstream 7bp 7664 chr9 117087131 117087131 1 + T G LUSC 117087132 + 117087112 117087152 41 ACACCAAGACCTACATGCTTGCTTTTGACGTGAACGATGAG ACACCAAGACCTACATGCTGGCTTTTGACGTGAACGATGAG < 41bp 0.848906356281911 0.570528601639932 NA NA prediction 0.556755509283959 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117087132 chr9:117087131 synonymous SNV . 0 20 hm7G_associated_SNPs_7932 0 0 1 0 2 ORM1 chr9:117087070 3'AG 117087070 Downstream 62bp 7665 chr9 117087131 117087131 1 + T G LUSC 117087132 + 117087112 117087152 41 ACACCAAGACCTACATGCTTGCTTTTGACGTGAACGATGAG ACACCAAGACCTACATGCTGGCTTTTGACGTGAACGATGAG < 41bp 0.848906356281911 0.570528601639932 NA NA prediction 0.556755509283959 Functional Loss - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117087132 chr9:117087131 synonymous SNV . 0 20 hm7G_associated_SNPs_7932 0 0 1 0 2 ORM1 chr9:117087177 5'GT 117087177 Upstream 47bp 7666 chr1 178490309 178490309 1 + T G rs202003188 178490310 + 178490290 178490330 41 CCTAGCAGGCTGCCCTTCTTGGACCAGGGGAAATTGATCTT CCTAGCAGGCTGCCCTTCTGGGACCAGGGGAAATTGATCTT < 41bp 0.778289086189135 0.486940074785212 NA NA prediction 0.55657817237827 Functional Loss - TEX35 ENSG00000240021 UTR3 Human protein_coding chr1:178490310 chr1:178490309 . . 0 20 hm7G_associated_SNPs_7934 0 0 0 0 1 TEX35 chr1:178490399 5'GT 178490399 Upstream 91bp 7667 chr14 104552179 104552179 1 + T G rs548884620 104552180 + 104552160 104552200 41 GCACCATTGGCATGCGGAGTGAGCTCGGCGGTGAGTCCGAG GCACCATTGGCATGCGGAGGGAGCTCGGCGGTGAGTCCGAG < 41bp 0.82417527546913 0.545948301217707 NA NA prediction 0.556453948502847 Functional Loss - ASPG ENSG00000166183 CDS Human protein_coding chr14:104552180 chr14:104552179 nonsynonymous SNV 0.787 0 20 hm7G_associated_SNPs_7935 0 0 0 0 1 ASPG chr14:104552189 5'GT 104552189 Upstream 11bp 7668 chr3 189611999 189611999 1 + T G HNSC 189612000 + 189611980 189612020 41 TCCCCTGTTGCACAGGATCTGGCAAGTCTGAAAATCCCTGA TCCCCTGTTGCACAGGATCGGGCAAGTCTGAAAATCCCTGA < 41bp 0.806809986935976 0.528615585325296 NA NA prediction 0.55638880322136 Functional Loss - TP63 ENSG00000073282 CDS Human protein_coding chr3:189612000 chr3:189611999 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_7936 0 0 0 0 1 TP63 chr3:189611995 3'AG 189611995 Downstream 5bp 7669 chr10 72511899 72511899 1 + T G BLCA 72511900 + 72511880 72511920 41 CGCAGACGAGACCACCACATGGTGCAGCGACACCTGTGTGA CGCAGACGAGACCACCACAGGGTGCAGCGACACCTGTGTGA < 41bp 0.778143559910039 0.433644532743822 NA NA prediction 0.556287119820079 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72511900 chr10:72511899 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7938 0 0 0 0 2 ADAMTS14 chr10:72511851 3'AG 72511851 Downstream 49bp 7670 chr10 72511899 72511899 1 + T G BLCA 72511900 + 72511880 72511920 41 CGCAGACGAGACCACCACATGGTGCAGCGACACCTGTGTGA CGCAGACGAGACCACCACAGGGTGCAGCGACACCTGTGTGA < 41bp 0.778143559910039 0.433644532743822 NA NA prediction 0.556287119820079 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72511900 chr10:72511899 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7938 0 0 0 0 2 ADAMTS14 chr10:72511983 5'GT 72511983 Upstream 85bp 7671 chr8 132996502 132996502 1 + T G KIRP 132996503 + 132996483 132996523 41 TAACTATTGAACTGGCTAATGAAGAAGTAGTTATTGATCTC TAACTATTGAACTGGCTAAGGAAGAAGTAGTTATTGATCTC < 41bp 0.77798290297689 0.486384195249872 NA NA prediction 0.55596580595378 Functional Loss - EFR3A ENSG00000132294 CDS Human protein_coding chr8:132996503 chr8:132996502 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_7944 0 0 1 0 1 EFR3A chr8:132996547 5'GT 132996547 Upstream 46bp 7672 chr12 53514582 53514582 1 + T G STAD 53514583 + 53514563 53514603 41 CCACCAGGCATCTTCATGCTGCTGCTCATCTTCTTTGCCTT CCACCAGGCATCTTCATGCGGCTGCTCATCTTCTTTGCCTT < 41bp 0.777974208333115 0.450323398973124 NA NA prediction 0.55594841666623 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514583 chr12:53514582 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7945 0 0 0 9 2 SOAT2 chr12:53514570 3'AG 53514570 Downstream 13bp 7673 chr12 53514582 53514582 1 + T G STAD 53514583 + 53514563 53514603 41 CCACCAGGCATCTTCATGCTGCTGCTCATCTTCTTTGCCTT CCACCAGGCATCTTCATGCGGCTGCTCATCTTCTTTGCCTT < 41bp 0.777974208333115 0.450323398973124 NA NA prediction 0.55594841666623 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53514583 chr12:53514582 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_7945 0 0 0 9 2 SOAT2 chr12:53514667 5'GT 53514667 Upstream 86bp 7674 chr5 80109479 80109479 1 + T G rs41545019 80109480 + 80109460 80109500 41 TACATAAAACAAGTTGCATTGATTACCATCATGGCTCAGAT TACATAAAACAAGTTGCATGGATTACCATCATGGCTCAGAT < 41bp 0.777928353463929 0.458863907991175 NA NA prediction 0.555856706927859 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:80109480 chr5:80109479 nonsynonymous SNV 0.971 5 20 hm7G_associated_SNPs_7947 0 0 1 0 2 MSH3 chr5:80109403 3'AG 80109403 Downstream 77bp 7675 chr5 80109479 80109479 1 + T G rs41545019 80109480 + 80109460 80109500 41 TACATAAAACAAGTTGCATTGATTACCATCATGGCTCAGAT TACATAAAACAAGTTGCATGGATTACCATCATGGCTCAGAT < 41bp 0.777928353463929 0.458863907991175 NA NA prediction 0.555856706927859 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:80109480 chr5:80109479 nonsynonymous SNV 0.971 5 20 hm7G_associated_SNPs_7947 0 0 1 0 2 MSH3 chr5:80109560 5'GT 80109560 Upstream 82bp 7676 chr17 29184033 29184033 1 + T G UCEC 29184034 + 29184014 29184054 41 TTAACTAAATTTAAAGAACTGAACACTAAAGTAATAGATCT TTAACTAAATTTAAAGAACGGAACACTAAAGTAATAGATCT < 41bp 0.777920706117879 0.482176679092317 NA NA prediction 0.555841412235759 Functional Loss - ATAD5 ENSG00000176208 CDS Human protein_coding chr17:29184034 chr17:29184033 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_7948 0 0 1 0 1 ATAD5 chr17:29184130 5'GT 29184130 Upstream 98bp 7677 chr8 25216507 25216507 1 + T G LUAD 25216508 + 25216488 25216528 41 GTGGCTTGCATGATTGCCCTGCTGCAGCAAATGGACGACAG GTGGCTTGCATGATTGCCCGGCTGCAGCAAATGGACGACAG < 41bp 0.777886548277697 0.453138173592477 NA NA prediction 0.555773096555394 Functional Loss - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25216508 chr8:25216507 nonsynonymous SNV 0.912 1 20 hm7G_associated_SNPs_7949 0 0 1 0 2 DOCK5 chr8:25216479 3'AG 25216479 Downstream 29bp 7678 chr8 25216507 25216507 1 + T G LUAD 25216508 + 25216488 25216528 41 GTGGCTTGCATGATTGCCCTGCTGCAGCAAATGGACGACAG GTGGCTTGCATGATTGCCCGGCTGCAGCAAATGGACGACAG < 41bp 0.777886548277697 0.453138173592477 NA NA prediction 0.555773096555394 Functional Loss - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25216508 chr8:25216507 nonsynonymous SNV 0.912 1 20 hm7G_associated_SNPs_7949 0 0 1 0 2 DOCK5 chr8:25216577 5'GT 25216577 Upstream 71bp 7679 chr15 42695083 42695083 1 + T G LUSC 42695084 + 42695064 42695104 41 TACATCAACATGCGGGAGGTGTCCCAGCGCTTCCGCCTGCC TACATCAACATGCGGGAGGGGTCCCAGCGCTTCCGCCTGCC < 41bp 0.777793658166151 0.458302318264225 NA NA prediction 0.555587316332301 Functional Loss - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42695084 chr15:42695083 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7952 0 0 0 0 1 CAPN3 chr15:42694992 3'AG 42694992 Downstream 92bp 7680 chr8 87568404 87568404 1 + T G BLCA 87568405 + 87568385 87568425 41 CCAGACAAGCTATAGTTAATGCCTCCAGGCTGCCTATGTCC CCAGACAAGCTATAGTTAAGGCCTCCAGGCTGCCTATGTCC < 41bp 0.777712605334712 0.46307950109456 NA NA prediction 0.555425210669423 Functional Loss - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87568405 chr8:87568404 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_7956 0 0 1 0 1 CPNE3 chr8:87568330 3'AG 87568330 Downstream 75bp 7681 chr10 71025536 71025536 1 + T G rs143913672 71025537 + 71025517 71025557 41 TAGAGCACCTGAGGATCACTGTGGGTGTGGACGGCACCCTG TAGAGCACCTGAGGATCACGGTGGGTGTGGACGGCACCCTG < 41bp 0.843096514079956 0.565409052588804 NA NA prediction 0.555374922982305 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025537 chr10:71025536 synonymous SNV . 0 20 hm7G_associated_SNPs_7957 0 0 0 0 1 HKDC1 chr10:71025574 5'GT 71025574 Upstream 39bp 7682 chr12 52695752 52695752 1 + T G rs550585959 52695753 + 52695733 52695773 41 CTTCAGCTGCATCTCGGCCTGCGGGCCCCGGCCCGGCCGCT CTTCAGCTGCATCTCGGCCGGCGGGCCCCGGCCCGGCCGCT < 41bp 0.859879985567195 0.582213093765751 NA NA prediction 0.555333783602887 Functional Loss - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52695753 chr12:52695752 nonsynonymous SNV 0.919 0 20 hm7G_associated_SNPs_7958 0 0 0 0 1 KRT86 chr12:52695697 3'AG 52695697 Downstream 56bp 7683 chr1 156811976 156811976 1 + T G KIRP 156811977 + 156811957 156811997 41 TCTCGGTGCACAAACTTGTTGGCAGCAAGGTAGGCCATGCC TCTCGGTGCACAAACTTGTGGGCAGCAAGGTAGGCCATGCC < 41bp 0.827453924724594 0.549809383064061 NA NA prediction 0.555289083321066 Functional Loss - INSRR;NTRK1 ENSG00000027644;ENSG00000198400 CDS Human other chr1:156811977 chr1:156811976 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_7959 0 0 0 0 1 INSRR;NTRK1 chr1:156811985 5'GT 156811985 Upstream 10bp 7684 chr10 102824653 102824653 1 + T G STAD 102824654 + 102824634 102824674 41 CTGAGGAGGAGGCTGAGAGTGAAGAGAATGACGATTACTAC CTGAGGAGGAGGCTGAGAGGGAAGAGAATGACGATTACTAC < 41bp 0.849405963942366 0.571772255890614 NA NA prediction 0.555267416103504 Functional Loss - KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824654 chr10:102824653 nonsynonymous SNV 0.580 0 20 hm7G_associated_SNPs_7960 0 0 1 0 2 KAZALD1 chr10:102824583 3'AG 102824583 Downstream 71bp 7685 chr10 102824653 102824653 1 + T G STAD 102824654 + 102824634 102824674 41 CTGAGGAGGAGGCTGAGAGTGAAGAGAATGACGATTACTAC CTGAGGAGGAGGCTGAGAGGGAAGAGAATGACGATTACTAC < 41bp 0.849405963942366 0.571772255890614 NA NA prediction 0.555267416103504 Functional Loss - KAZALD1 ENSG00000107821 CDS Human protein_coding chr10:102824654 chr10:102824653 nonsynonymous SNV 0.580 0 20 hm7G_associated_SNPs_7960 0 0 1 0 2 KAZALD1 chr10:102824700 5'GT 102824700 Upstream 48bp 7686 chr5 109178114 109178114 1 + T G UCEC 109178115 + 109178095 109178135 41 TTGCAATGAAAATTTCTTCTGATATAAAAAGCCAAAATAGA TTGCAATGAAAATTTCTTCGGATATAAAAAGCCAAAATAGA < 41bp 0.777613464916354 0.474579065456944 NA NA prediction 0.555226929832707 Functional Loss - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109178115 chr5:109178114 synonymous SNV . 0 20 hm7G_associated_SNPs_7961 0 0 1 0 2 MAN2A1 chr5:109178029 3'AG 109178029 Downstream 86bp 7687 chr5 109178114 109178114 1 + T G UCEC 109178115 + 109178095 109178135 41 TTGCAATGAAAATTTCTTCTGATATAAAAAGCCAAAATAGA TTGCAATGAAAATTTCTTCGGATATAAAAAGCCAAAATAGA < 41bp 0.777613464916354 0.474579065456944 NA NA prediction 0.555226929832707 Functional Loss - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109178115 chr5:109178114 synonymous SNV . 0 20 hm7G_associated_SNPs_7961 0 0 1 0 2 MAN2A1 chr5:109178162 5'GT 109178162 Upstream 49bp 7688 chr16 28883683 28883683 1 + T G HNSC 28883684 + 28883664 28883704 41 AGAGTGAGACAAGGCGGGGTGAATACGTCCTCACCTTCAAC AGAGTGAGACAAGGCGGGGGGAATACGTCCTCACCTTCAAC < 41bp 0.777586672482294 0.447756792366367 NA NA prediction 0.555173344964589 Functional Loss - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28883684 chr16:28883683 synonymous SNV . 0 20 hm7G_associated_SNPs_7962 0 0 1 0 1 SH2B1 chr16:28883722 5'GT 28883722 Upstream 40bp 7689 chr3 13663297 13663297 1 + T G SKCM 13663298 + 13663278 13663318 41 AAGACGAGTGCCTGATGGGTGCTCACGATTGTAGCCGGCGA AAGACGAGTGCCTGATGGGGGCTCACGATTGTAGCCGGCGA < 41bp 0.853869914933578 0.576297655857893 NA NA prediction 0.555144518151371 Functional Loss - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13663298 chr3:13663297 synonymous SNV . 0 20 hm7G_associated_SNPs_7963 0 0 0 0 1 FBLN2 chr3:13663275 3'AG 13663275 Downstream 23bp 7690 chr9 5126705 5126705 1 + T G UCEC 5126706 + 5126686 5126726 41 CTATATGATCATGACAGAATGCTGGAACAATAATGTAAATC CTATATGATCATGACAGAAGGCTGGAACAATAATGTAAATC < 41bp 0.795023427728857 0.517483578669438 NA NA prediction 0.555079698118839 Functional Loss - JAK2 ENSG00000096968 CDS Human protein_coding chr9:5126706 chr9:5126705 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_7964 0 0 0 0 1 JAK2 chr9:5126684 3'AG 5126684 Downstream 22bp 7691 chr20 58416496 58416496 1 + T G UCEC 58416497 + 58416477 58416517 41 TTAAGAGACAGAAAAATTCTGATACGATTCAGTGATTACGT TTAAGAGACAGAAAAATTCGGATACGATTCAGTGATTACGT < 41bp 0.813243929658116 0.535841158333661 NA NA prediction 0.55480554264891 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58416497 chr20:58416496 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7967 0 0 0 0 2 PHACTR3 chr20:58416450 3'AG 58416450 Downstream 47bp 7692 chr20 58416496 58416496 1 + T G UCEC 58416497 + 58416477 58416517 41 TTAAGAGACAGAAAAATTCTGATACGATTCAGTGATTACGT TTAAGAGACAGAAAAATTCGGATACGATTCAGTGATTACGT < 41bp 0.813243929658116 0.535841158333661 NA NA prediction 0.55480554264891 Functional Loss - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58416497 chr20:58416496 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7967 0 0 0 0 2 PHACTR3 chr20:58416590 5'GT 58416590 Upstream 95bp 7693 chr6 160494795 160494795 1 + T G SKCM 160494796 + 160494776 160494816 41 TCCTACTTAACAGACCGAATGTTCCGTGAGGAATGGAAGCT TCCTACTTAACAGACCGAAGGTTCCGTGAGGAATGGAAGCT < 41bp 0.830090003362717 0.552706689834404 NA NA prediction 0.554766627056626 Functional Loss - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160494796 chr6:160494795 nonsynonymous SNV 0.758 4 20 hm7G_associated_SNPs_7969 0 0 1 0 1 IGF2R chr6:160494789 3'AG 160494789 Downstream 7bp 7694 chr6 30459148 30459148 1 + T G OV 30459149 + 30459129 30459169 41 CAGAGATACACGTGCCATGTGCAGCATGAGGGGCTACCCGA CAGAGATACACGTGCCATGGGCAGCATGAGGGGCTACCCGA < 41bp 0.7824669280418 0.505127197343053 NA NA prediction 0.554679461397494 Functional Loss - HLA-E ENSG00000204592 CDS Human protein_coding chr6:30459149 chr6:30459148 nonsynonymous SNV 0.941 3 20 hm7G_associated_SNPs_7971 0 0 1 0 1 HLA-E chr6:30459189 5'GT 30459189 Upstream 42bp 7695 chr1 156617352 156617352 1 + T G LUAD 156617353 + 156617333 156617373 41 GCTATGCTTTCTCCTTTTCTGGGGCCCAGGAGGCCTGTGCC GCTATGCTTTCTCCTTTTCGGGGGCCCAGGAGGCCTGTGCC < 41bp 0.855896414296987 0.578589484305331 NA NA prediction 0.554613859983312 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617353 chr1:156617352 synonymous SNV . 0 20 hm7G_associated_SNPs_7972 0 0 0 0 1 BCAN chr1:156617300 3'AG 156617300 Downstream 53bp 7696 chr3 178951956 178951956 1 + T G UCEC 178951957 + 178951937 178951977 41 TTCATAAATCTTTTCTCAATGATGCTTGGCTCTGGAATGCC TTCATAAATCTTTTCTCAAGGATGCTTGGCTCTGGAATGCC < 41bp 0.791192824797396 0.513888672496385 NA NA prediction 0.554608304602021 Functional Loss - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178951957 chr3:178951956 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7973 0 0 1 0 1 PIK3CA chr3:178951882 3'AG 178951882 Downstream 75bp 7697 chr10 70967572 70967572 1 + T G UCEC 70967573 + 70967553 70967593 41 CCAGGCAGTATAGCAGGAATGAGCCCCTGACCTTTGCATGG CCAGGCAGTATAGCAGGAAGGAGCCCCTGACCTTTGCATGG < 41bp 0.777299204014288 0.459027704265764 NA NA prediction 0.554598408028576 Functional Loss - SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70967573 chr10:70967572 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_7974 0 0 1 0 1 SUPV3L1 chr10:70967549 3'AG 70967549 Downstream 24bp 7698 chr6 122743417 122743417 1 + T G SKCM 122743418 + 122743398 122743438 41 CAGTTATTCCAGAAACTAATGAGGATGTTATATCTGATCCC CAGTTATTCCAGAAACTAAGGAGGATGTTATATCTGATCCC < 41bp 0.777291993841095 0.469039081418088 NA NA prediction 0.554583987682189 Functional Loss - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122743418 chr6:122743417 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_7975 0 0 0 0 1 HSF2 chr6:122743443 5'GT 122743443 Upstream 27bp 7699 chr10 74631226 74631226 1 + T G LUAD 74631227 + 74631207 74631247 41 GCCACACAGTTTGGCATTTTGGCCCGGCTTACCTGGTGGGA GCCACACAGTTTGGCATTTGGGCCCGGCTTACCTGGTGGGA < 41bp 0.854402306517403 0.577162510395543 NA NA prediction 0.55447959224372 Functional Loss - MCU ENSG00000156026 CDS Human protein_coding chr10:74631227 chr10:74631226 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7977 0 0 1 0 1 MCU chr10:74631135 3'AG 74631135 Downstream 92bp 7700 chr15 75586580 75586580 1 + T G rs561678672 75586581 + 75586561 75586601 41 CCCCAGCCCCCCAGGAACTTGGGGCTGCCGGTGAGCAGGAT CCCCAGCCCCCCAGGAACTGGGGGCTGCCGGTGAGCAGGAT < 41bp 0.852541468013422 0.575340314642323 NA NA prediction 0.554402306742198 Functional Loss - GOLGA6D ENSG00000140478 CDS Human protein_coding chr15:75586581 chr15:75586580 synonymous SNV . 0 20 hm7G_associated_SNPs_7979 0 0 0 0 1 GOLGA6D chr15:75586602 5'GT 75586602 Upstream 23bp 7701 chr19 44571355 44571355 1 + T G UCEC 44571356 + 44571336 44571376 41 GAGAAAATCCATCCAAATGTGAAGACTGTGGGAAGCGCTAC GAGAAAATCCATCCAAATGGGAAGACTGTGGGAAGCGCTAC < 41bp 0.816648649460796 0.539462025441621 NA NA prediction 0.55437324803835 Functional Loss - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44571356 chr19:44571355 nonsynonymous SNV 0.285 3 20 hm7G_associated_SNPs_7980 0 0 1 0 1 ZNF223 chr19:44571426 5'GT 44571426 Upstream 72bp 7702 chr2 119735500 119735500 1 + T G LUSC 119735501 + 119735481 119735521 41 AAGGGAGAGAAAGGAGACCTGGGTCTCCCAGGTGAGGGCCG AAGGGAGAGAAAGGAGACCGGGGTCTCCCAGGTGAGGGCCG < 41bp 0.850908596397395 0.573769620930381 NA NA prediction 0.554277950934028 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735501 chr2:119735500 nonsynonymous SNV 0.929 2 20 hm7G_associated_SNPs_7981 0 0 0 0 2 MARCO chr2:119735404 3'AG 119735404 Downstream 97bp 7703 chr2 119735500 119735500 1 + T G LUSC 119735501 + 119735481 119735521 41 AAGGGAGAGAAAGGAGACCTGGGTCTCCCAGGTGAGGGCCG AAGGGAGAGAAAGGAGACCGGGGTCTCCCAGGTGAGGGCCG < 41bp 0.850908596397395 0.573769620930381 NA NA prediction 0.554277950934028 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735501 chr2:119735500 nonsynonymous SNV 0.929 2 20 hm7G_associated_SNPs_7981 0 0 0 0 2 MARCO chr2:119735511 5'GT 119735511 Upstream 12bp 7704 chr5 162868910 162868910 1 + T G rs11541970 162868911 + 162868891 162868931 41 GGAGAAATAGCATTAATTTTGAAAGACTAGAAGCTCAACTG GGAGAAATAGCATTAATTTGGAAAGACTAGAAGCTCAACTG < 41bp 0.810685325165022 0.533567867848096 NA NA prediction 0.554234914633853 Functional Loss - CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162868911 chr5:162868910 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_7983 0 0 1 0 2 CCNG1 chr5:162868892 3'AG 162868892 Downstream 19bp 7705 chr5 162868910 162868910 1 + T G rs11541970 162868911 + 162868891 162868931 41 GGAGAAATAGCATTAATTTTGAAAGACTAGAAGCTCAACTG GGAGAAATAGCATTAATTTGGAAAGACTAGAAGCTCAACTG < 41bp 0.810685325165022 0.533567867848096 NA NA prediction 0.554234914633853 Functional Loss - CCNG1 ENSG00000113328 CDS Human protein_coding chr5:162868911 chr5:162868910 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_7983 0 0 1 0 2 CCNG1 chr5:162868970 5'GT 162868970 Upstream 61bp 7706 chr7 142458534 142458534 1 + T G UCEC 142458535 + 142458515 142458555 41 CTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGCCACT CTCCCTCATCAACGAACAGGGGGTGGTATCAGCAGGCCACT < 41bp 0.84295521474561 0.565853409851619 NA NA prediction 0.554203609787982 Functional Loss - PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458535 chr7:142458534 nonsynonymous SNV 0.800 5 20 hm7G_associated_SNPs_7984 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 55bp 7707 chr7 142458534 142458534 1 + T G UCEC 142458535 + 142458515 142458555 41 CTCCCTCATCAACGAACAGTGGGTGGTATCAGCAGGCCACT CTCCCTCATCAACGAACAGGGGGTGGTATCAGCAGGCCACT < 41bp 0.84295521474561 0.565853409851619 NA NA prediction 0.554203609787982 Functional Loss - PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458535 chr7:142458534 nonsynonymous SNV 0.800 5 20 hm7G_associated_SNPs_7984 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 32bp 7708 chr10 93244941 93244941 1 + T G UCEC 93244942 + 93244922 93244962 41 AATTTATCTTTACAGATACTGCAAACAATTTAGTTCACCCT AATTTATCTTTACAGATACGGCAAACAATTTAGTTCACCCT < 41bp 0.777003613827907 0.484254817423531 NA NA prediction 0.554007227655814 Functional Loss - HECTD2 ENSG00000165338 CDS Human protein_coding chr10:93244942 chr10:93244941 synonymous SNV . 0 20 hm7G_associated_SNPs_7986 0 0 0 0 1 HECTD2 chr10:93244937 3'AG 93244937 Downstream 5bp 7709 chrX 130219587 130219587 1 + T G OV 130219588 + 130219568 130219608 41 AGCCCCAGGATCAGCTTTCTGCCCTGCAGTTGCTGGTCTAC AGCCCCAGGATCAGCTTTCGGCCCTGCAGTTGCTGGTCTAC < 41bp 0.77699494466407 0.439290698711635 NA NA prediction 0.55398988932814 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219588 chrX:130219587 synonymous SNV . 0 20 hm7G_associated_SNPs_7987 0 0 0 0 1 ARHGAP36 chrX:130219562 3'AG 130219562 Downstream 26bp 7710 chr10 95372953 95372953 1 + T G rs76999928 95372954 + 95372934 95372974 41 AAACTCATAATGTCCCAGATGTGAAAAAGGTAGGTGGCCTT AAACTCATAATGTCCCAGAGGTGAAAAAGGTAGGTGGCCTT < 41bp 0.776980224680321 0.483874044188959 NA NA prediction 0.553960449360643 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95372954 chr10:95372953 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_7988 1 0 0 0 1 PDE6C chr10:95372962 5'GT 95372962 Upstream 10bp 7711 chr20 5963670 5963670 1 + T G SKCM 5963671 + 5963651 5963691 41 AATCAACATCAAGCCTTGTTGGAAGCCATGGAGCAGCAAAG AATCAACATCAAGCCTTGTGGGAAGCCATGGAGCAGCAAAG < 41bp 0.846055759074846 0.569098613077823 NA NA prediction 0.553914291994048 Functional Loss - MCM8 ENSG00000125885 CDS Human protein_coding chr20:5963671 chr20:5963670 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_7989 0 0 1 0 1 MCM8 chr20:5963616 3'AG 5963616 Downstream 55bp 7712 chr2 61148917 61148917 1 + T G SKCM 61148918 + 61148898 61148938 41 AACCAAACTTGTTTTCTCATGATGCAGTTGTGAGAGAAATG AACCAAACTTGTTTTCTCAGGATGCAGTTGTGAGAGAAATG < 41bp 0.776764448591053 0.499174293713484 NA NA prediction 0.553528897182106 Functional Loss - REL ENSG00000162924 CDS Human protein_coding chr2:61148918 chr2:61148917 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_7994 0 0 1 0 1 REL chr2:61148898 3'AG 61148898 Downstream 20bp 7713 chr3 121647943 121647943 1 + T G UCEC 121647944 + 121647924 121647964 41 TTCTGTGCAGGAGAAGAACTGGTACAGTCTTGTCATTCGTG TTCTGTGCAGGAGAAGAACGGGTACAGTCTTGTCATTCGTG < 41bp 0.845879532612421 0.569126364387153 NA NA prediction 0.553506336450537 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121647944 chr3:121647943 nonsynonymous SNV 0.925 0 20 hm7G_associated_SNPs_7995 0 0 0 0 1 SLC15A2 chr3:121647993 5'GT 121647993 Upstream 51bp 7714 chr1 171765655 171765655 1 + T G LAML 171765656 + 171765636 171765676 41 AACCTTGTGTGCCGAGACTTGGGGCTAAAAGACTCAGTGCT AACCTTGTGTGCCGAGACTGGGGGCTAAAAGACTCAGTGCT < 41bp 0.826396348921913 0.549685914450215 NA NA prediction 0.553420868943398 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171765656 chr1:171765655 nonsynonymous SNV 0.719 1 20 hm7G_associated_SNPs_7996 0 0 1 0 1 METTL13 chr1:171765622 3'AG 171765622 Downstream 34bp 7715 chrX 70516429 70516429 1 + T G UCEC 70516430 + 70516410 70516450 41 TCCAGATTTCCTCGTCCTGTGACTGTGGAGCCCATGGACCA TCCAGATTTCCTCGTCCTGGGACTGTGGAGCCCATGGACCA < 41bp 0.848363369136663 0.571757171787702 NA NA prediction 0.553212394697924 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70516430 chrX:70516429 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7997 0 0 1 0 2 NONO chrX:70516415 3'AG 70516415 Downstream 15bp 7716 chrX 70516429 70516429 1 + T G UCEC 70516430 + 70516410 70516450 41 TCCAGATTTCCTCGTCCTGTGACTGTGGAGCCCATGGACCA TCCAGATTTCCTCGTCCTGGGACTGTGGAGCCCATGGACCA < 41bp 0.848363369136663 0.571757171787702 NA NA prediction 0.553212394697924 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70516430 chrX:70516429 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_7997 0 0 1 0 2 NONO chrX:70516510 5'GT 70516510 Upstream 82bp 7717 chr3 179418806 179418806 1 + T G UCEC 179418807 + 179418787 179418827 41 TCTCCTCAGATCTAGATACTGATGACGATTTAAATAGCGAC TCTCCTCAGATCTAGATACGGATGACGATTTAAATAGCGAC < 41bp 0.776601191040888 0.47654873618537 NA NA prediction 0.553202382081777 Functional Loss - USP13 ENSG00000058056 CDS Human protein_coding chr3:179418807 chr3:179418806 synonymous SNV . 0 20 hm7G_associated_SNPs_7998 0 0 1 0 1 USP13 chr3:179418796 3'AG 179418796 Downstream 11bp 7718 chr13 49033926 49033926 1 + T G UCS 49033927 + 49033907 49033947 41 ACCCTTTTCCAGCACACCCTGCAGAATGAGTATGAACTCAT ACCCTTTTCCAGCACACCCGGCAGAATGAGTATGAACTCAT < 41bp 0.835947222275865 0.559379246859384 NA NA prediction 0.553135950832961 Functional Loss - RB1 ENSG00000139687 CDS Human protein_coding chr13:49033927 chr13:49033926 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_7999 0 0 1 0 1 RB1 chr13:49033969 5'GT 49033969 Upstream 44bp 7719 chr13 39613381 39613381 1 + T G UCEC 39613382 + 39613362 39613402 41 TTTTACCGGAACAACATTTTGTGTTGCAGTTGACTCCCTCA TTTTACCGGAACAACATTTGGTGTTGCAGTTGACTCCCTCA < 41bp 0.776505647391155 0.461887657159176 NA NA prediction 0.55301129478231 Functional Loss - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39613382 chr13:39613381 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_8001 0 0 1 0 1 NHLRC3 chr13:39613425 5'GT 39613425 Upstream 45bp 7720 chr7 117149105 117149105 1 + T G OV 117149106 + 117149086 117149126 41 AGAGAATGGGATAGAGAGCTGGCTTCAAAGAAAAATCCTAA AGAGAATGGGATAGAGAGCGGGCTTCAAAGAAAAATCCTAA < 41bp 0.77637759597674 0.468849595568134 NA NA prediction 0.552755191953479 Functional Loss - CFTR ENSG00000001626 CDS Human protein_coding chr7:117149106 chr7:117149105 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_8005 0 0 0 0 2 CFTR chr7:117149088 3'AG 117149088 Downstream 18bp 7721 chr7 117149105 117149105 1 + T G OV 117149106 + 117149086 117149126 41 AGAGAATGGGATAGAGAGCTGGCTTCAAAGAAAAATCCTAA AGAGAATGGGATAGAGAGCGGGCTTCAAAGAAAAATCCTAA < 41bp 0.77637759597674 0.468849595568134 NA NA prediction 0.552755191953479 Functional Loss - CFTR ENSG00000001626 CDS Human protein_coding chr7:117149106 chr7:117149105 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_8005 0 0 0 0 2 CFTR chr7:117149196 5'GT 117149196 Upstream 92bp 7722 chrX 115572199 115572199 1 + T G STAD 115572200 + 115572180 115572220 41 ACCTTTGTTCTTTCTGGAGTGTTCACTGGGACAATTTGCTA ACCTTTGTTCTTTCTGGAGGGTTCACTGGGACAATTTGCTA < 41bp 0.825637666358315 0.549264264357568 NA NA prediction 0.552746804001494 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115572200 chrX:115572199 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_8006 0 0 1 0 2 SLC6A14 chrX:115572134 3'AG 115572134 Downstream 66bp 7723 chrX 115572199 115572199 1 + T G STAD 115572200 + 115572180 115572220 41 ACCTTTGTTCTTTCTGGAGTGTTCACTGGGACAATTTGCTA ACCTTTGTTCTTTCTGGAGGGTTCACTGGGACAATTTGCTA < 41bp 0.825637666358315 0.549264264357568 NA NA prediction 0.552746804001494 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115572200 chrX:115572199 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_8006 0 0 1 0 2 SLC6A14 chrX:115572265 5'GT 115572265 Upstream 67bp 7724 chr1 44437660 44437660 1 + T G LUSC 44437661 + 44437641 44437681 41 AGCCTATACTGGCACCATGTGAGCTGGAAGCTGCCTGCAAC AGCCTATACTGGCACCATGGGAGCTGGAAGCTGCCTGCAAC < 41bp 0.776271612659885 0.458037055890385 NA NA prediction 0.552543225319769 Functional Loss - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437661 chr1:44437660 nonsynonymous SNV 0.902 1 20 hm7G_associated_SNPs_8008 0 0 1 0 1 DPH2 chr1:44437742 5'GT 44437742 Upstream 83bp 7725 chr11 75508294 75508294 1 + T G LIHC 75508295 + 75508275 75508315 41 TCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCATGCCT TCGTGGTCGGGGGTGCGGCGGAGTCTCTGAGCTCCATGCCT < 41bp 0.776263213020891 0.442913348901631 NA NA prediction 0.552526426041781 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508295 chr11:75508294 synonymous SNV . 0 20 hm7G_associated_SNPs_8009 0 0 1 0 2 DGAT2 chr11:75508203 3'AG 75508203 Downstream 92bp 7726 chr11 75508294 75508294 1 + T G LIHC 75508295 + 75508275 75508315 41 TCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCATGCCT TCGTGGTCGGGGGTGCGGCGGAGTCTCTGAGCTCCATGCCT < 41bp 0.776263213020891 0.442913348901631 NA NA prediction 0.552526426041781 Functional Loss - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75508295 chr11:75508294 synonymous SNV . 0 20 hm7G_associated_SNPs_8009 0 0 1 0 2 DGAT2 chr11:75508377 5'GT 75508377 Upstream 84bp 7727 chr17 2579865 2579865 1 + T G SKCM 2579866 + 2579846 2579886 41 AGACAAGACTATTAAGATGTGGGATGTCAGTACTGGCATGT AGACAAGACTATTAAGATGGGGGATGTCAGTACTGGCATGT < 41bp 0.776248858603512 0.458392794170764 NA NA prediction 0.552497717207023 Functional Loss - PAFAH1B1 ENSG00000007168 CDS Human protein_coding chr17:2579866 chr17:2579865 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8010 0 0 1 0 2 PAFAH1B1 chr17:2579799 3'AG 2579799 Downstream 67bp 7728 chr17 2579865 2579865 1 + T G SKCM 2579866 + 2579846 2579886 41 AGACAAGACTATTAAGATGTGGGATGTCAGTACTGGCATGT AGACAAGACTATTAAGATGGGGGATGTCAGTACTGGCATGT < 41bp 0.776248858603512 0.458392794170764 NA NA prediction 0.552497717207023 Functional Loss - PAFAH1B1 ENSG00000007168 CDS Human protein_coding chr17:2579866 chr17:2579865 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8010 0 0 1 0 2 PAFAH1B1 chr17:2579900 5'GT 2579900 Upstream 36bp 7729 chr19 3151719 3151719 1 + T G UCEC 3151720 + 3151700 3151740 41 TGCAGCTACCTGTCCCACCTGGAGCGCATCACCGAGGAGGG TGCAGCTACCTGTCCCACCGGGAGCGCATCACCGAGGAGGG < 41bp 0.849796623559143 0.573608971005319 NA NA prediction 0.552375305107648 Functional Loss - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151720 chr19:3151719 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8011 0 0 0 0 1 GNA15 chr19:3151705 3'AG 3151705 Downstream 15bp 7730 chr12 105534997 105534997 1 + T G UCEC 105534998 + 105534978 105535018 41 CAAGTAGTCATGAAAAAACTGGATCTTATTAGTGAACTTAG CAAGTAGTCATGAAAAAACGGGATCTTATTAGTGAACTTAG < 41bp 0.811075799838956 0.534924209417545 NA NA prediction 0.552303180842822 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105534998 chr12:105534997 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8012 0 0 1 0 2 WASHC4 chr12:105534945 3'AG 105534945 Downstream 53bp 7731 chr12 105534997 105534997 1 + T G UCEC 105534998 + 105534978 105535018 41 CAAGTAGTCATGAAAAAACTGGATCTTATTAGTGAACTTAG CAAGTAGTCATGAAAAAACGGGATCTTATTAGTGAACTTAG < 41bp 0.811075799838956 0.534924209417545 NA NA prediction 0.552303180842822 Functional Loss - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105534998 chr12:105534997 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8012 0 0 1 0 2 WASHC4 chr12:105535024 5'GT 105535024 Upstream 28bp 7732 chr19 41105459 41105459 1 + T G LUAD 41105460 + 41105440 41105480 41 TCCCTCAACTGGCAGCCACTGACGTGAGTGGGCAGTCCCTC TCCCTCAACTGGCAGCCACGGACGTGAGTGGGCAGTCCCTC < 41bp 0.776119970004883 0.446006528515858 NA NA prediction 0.552239940009767 Functional Loss - LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41105460 chr19:41105459 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_8014 0 0 0 0 1 LTBP4 chr19:41105462 5'GT 41105462 Upstream 4bp 7733 chr7 50367351 50367351 1 + T G LUSC 50367352 + 50367332 50367372 41 TCCAAGAGTGACAGAGTCGTGGGTAAGTGGGTCACCAGCGG TCCAAGAGTGACAGAGTCGGGGGTAAGTGGGTCACCAGCGG < 41bp 0.776030198580334 0.484648920049427 NA NA prediction 0.552060397160667 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50367352 chr7:50367351 nonsynonymous SNV 0.654 0 20 hm7G_associated_SNPs_8016 0 0 0 0 1 IKZF1 chr7:50367353 5'GT 50367353 Upstream 3bp 7734 chr8 18079577 18079577 1 + T G rs4986992 18079578 + 18079558 18079598 41 TGGACATTGAAGCATATCTTGAAAGAATTGGCTATAAGAAG TGGACATTGAAGCATATCTGGAAAGAATTGGCTATAAGAAG < 41bp 0.775991885716393 0.492804902342091 NA NA prediction 0.551983771432787 Functional Loss - NAT1 ENSG00000171428 CDS Human protein_coding chr8:18079578 chr8:18079577 synonymous SNV . 0 20 hm7G_associated_SNPs_8017 0 0 0 0 1 NAT1 chr8:18079551 3'AG 18079551 Downstream 27bp 7735 chr16 11009465 11009465 1 + T G UCEC 11009466 + 11009446 11009486 41 CCCCAGGCTTTCCCCAAACTGGTGCGGATCCTCACGGCCTT CCCCAGGCTTTCCCCAAACGGGTGCGGATCCTCACGGCCTT < 41bp 0.775973148605665 0.435690730483672 NA NA prediction 0.55194629721133 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:11009466 chr16:11009465 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_8019 0 0 0 0 2 CIITA chr16:11009427 3'AG 11009427 Downstream 39bp 7736 chr16 11009465 11009465 1 + T G UCEC 11009466 + 11009446 11009486 41 CCCCAGGCTTTCCCCAAACTGGTGCGGATCCTCACGGCCTT CCCCAGGCTTTCCCCAAACGGGTGCGGATCCTCACGGCCTT < 41bp 0.775973148605665 0.435690730483672 NA NA prediction 0.55194629721133 Functional Loss - CIITA ENSG00000179583 CDS Human protein_coding chr16:11009466 chr16:11009465 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_8019 0 0 0 0 2 CIITA chr16:11009507 5'GT 11009507 Upstream 43bp 7737 chr1 46976269 46976269 1 + T G BLCA 46976270 + 46976250 46976290 41 AGAAGACTCACTACCCAGATGTGGTGATGCGTGAGAGGCTG AGAAGACTCACTACCCAGAGGTGGTGATGCGTGAGAGGCTG < 41bp 0.848566172945248 0.572605644216021 NA NA prediction 0.551921057458455 Functional Loss - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976270 chr1:46976269 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_8020 0 0 1 0 1 DMBX1 chr1:46976326 5'GT 46976326 Upstream 58bp 7738 chr1 200826974 200826974 1 + T G rs35253872 200826975 + 200826955 200826995 41 ACACTTATTGCCCAGAAACTGAAGAAATCAATAAACTGACT ACACTTATTGCCCAGAAACGGAAGAAATCAATAAACTGACT < 41bp 0.775896691031404 0.498504607547925 NA NA prediction 0.551793382062808 Functional Loss - CAMSAP2 ENSG00000118200 CDS Human protein_coding chr1:200826975 chr1:200826974 synonymous SNV . 0 20 hm7G_associated_SNPs_8024 0 0 1 0 1 CAMSAP2 chr1:200826882 3'AG 200826882 Downstream 93bp 7739 chr2 99995867 99995867 1 + T G KIRP 99995868 + 99995848 99995888 41 TTCCTCTTGAAGCTATTAATGAACAGACTAAGATGATTAAA TTCCTCTTGAAGCTATTAAGGAACAGACTAAGATGATTAAA < 41bp 0.813890567120673 0.538104086314224 NA NA prediction 0.551572961612898 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99995868 chr2:99995867 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_8027 0 0 1 0 2 EIF5B chr2:99995781 3'AG 99995781 Downstream 87bp 7740 chr2 99995867 99995867 1 + T G KIRP 99995868 + 99995848 99995888 41 TTCCTCTTGAAGCTATTAATGAACAGACTAAGATGATTAAA TTCCTCTTGAAGCTATTAAGGAACAGACTAAGATGATTAAA < 41bp 0.813890567120673 0.538104086314224 NA NA prediction 0.551572961612898 Functional Loss - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99995868 chr2:99995867 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_8027 0 0 1 0 2 EIF5B chr2:99995891 5'GT 99995891 Upstream 25bp 7741 chr19 10657719 10657719 1 + T G BRCA 10657720 + 10657700 10657740 41 TTTGGCCTACACCGGCTGGTGGAGCTTGGGCAGAGCTCAGG TTTGGCCTACACCGGCTGGGGGAGCTTGGGCAGAGCTCAGG < 41bp 0.861233550328697 0.585463240404993 NA NA prediction 0.551540619847408 Functional Loss - ATG4D ENSG00000130734 CDS Human protein_coding chr19:10657720 chr19:10657719 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_8028 0 0 1 1 1 ATG4D chr19:10657791 5'GT 10657791 Upstream 73bp 7742 chr5 162894724 162894724 1 + T G GBM 162894725 + 162894705 162894745 41 AGAAGGAATCTCAAAAGAATGATAAAGATTTGAAGATATTA AGAAGGAATCTCAAAAGAAGGATAAAGATTTGAAGATATTA < 41bp 0.807769940426918 0.532018968547711 NA NA prediction 0.551501943758413 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162894725 chr5:162894724 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_8029 0 0 1 0 3 HMMR chr5:162894707 3'AG 162894707 Downstream 18bp 7743 chr5 162894724 162894724 1 + T G GBM 162894725 + 162894705 162894745 41 AGAAGGAATCTCAAAAGAATGATAAAGATTTGAAGATATTA AGAAGGAATCTCAAAAGAAGGATAAAGATTTGAAGATATTA < 41bp 0.807769940426918 0.532018968547711 NA NA prediction 0.551501943758413 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162894725 chr5:162894724 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_8029 0 0 1 0 3 HMMR chr5:162894710 3'AG 162894710 Downstream 15bp 7744 chr5 162894724 162894724 1 + T G GBM 162894725 + 162894705 162894745 41 AGAAGGAATCTCAAAAGAATGATAAAGATTTGAAGATATTA AGAAGGAATCTCAAAAGAAGGATAAAGATTTGAAGATATTA < 41bp 0.807769940426918 0.532018968547711 NA NA prediction 0.551501943758413 Functional Loss - HMMR ENSG00000072571 CDS Human protein_coding chr5:162894725 chr5:162894724 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_8029 0 0 1 0 3 HMMR chr5:162894754 5'GT 162894754 Upstream 31bp 7745 chr16 2017804 2017804 1 + T G rs146108433 2017805 + 2017785 2017825 41 ATAAACTCCGGAAAACCATTGGCCGCCTGGAAGTCAAGGTA ATAAACTCCGGAAAACCATGGGCCGCCTGGAAGTCAAGGTA < 41bp 0.860085677844756 0.58435277414539 NA NA prediction 0.551465807398732 Functional Loss - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2017805 chr16:2017804 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_8030 0 0 0 0 2 RNF151 chr16:2017726 3'AG 2017726 Downstream 79bp 7746 chr16 2017804 2017804 1 + T G rs146108433 2017805 + 2017785 2017825 41 ATAAACTCCGGAAAACCATTGGCCGCCTGGAAGTCAAGGTA ATAAACTCCGGAAAACCATGGGCCGCCTGGAAGTCAAGGTA < 41bp 0.860085677844756 0.58435277414539 NA NA prediction 0.551465807398732 Functional Loss - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2017805 chr16:2017804 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_8030 0 0 0 0 2 RNF151 chr16:2017822 5'GT 2017822 Upstream 19bp 7747 chr9 108120640 108120640 1 + T G UCEC 108120641 + 108120621 108120661 41 GCAGTTCTATCCATGATTTTGATGGTGATAATCAGGTATAT GCAGTTCTATCCATGATTTGGATGGTGATAATCAGGTATAT < 41bp 0.775689463973078 0.475313257463043 NA NA prediction 0.551378927946157 Functional Loss - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108120641 chr9:108120640 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_8032 0 0 1 0 2 SLC44A1 chr9:108120625 3'AG 108120625 Downstream 16bp 7748 chr9 108120640 108120640 1 + T G UCEC 108120641 + 108120621 108120661 41 GCAGTTCTATCCATGATTTTGATGGTGATAATCAGGTATAT GCAGTTCTATCCATGATTTGGATGGTGATAATCAGGTATAT < 41bp 0.775689463973078 0.475313257463043 NA NA prediction 0.551378927946157 Functional Loss - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108120641 chr9:108120640 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_8032 0 0 1 0 2 SLC44A1 chr9:108120714 5'GT 108120714 Upstream 75bp 7749 chr19 12864126 12864126 1 + T G LUAD 12864127 + 12864107 12864147 41 CGAGAAGCTTGTGATTTATTGTGACCAGTATGCCAGCCTCA CGAGAAGCTTGTGATTTATGGTGACCAGTATGCCAGCCTCA < 41bp 0.775664504334693 0.445606801577081 NA NA prediction 0.551329008669386 Functional Loss - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12864127 chr19:12864126 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_8033 0 0 0 0 2 BEST2 chr19:12864074 3'AG 12864074 Downstream 53bp 7750 chr19 12864126 12864126 1 + T G LUAD 12864127 + 12864107 12864147 41 CGAGAAGCTTGTGATTTATTGTGACCAGTATGCCAGCCTCA CGAGAAGCTTGTGATTTATGGTGACCAGTATGCCAGCCTCA < 41bp 0.775664504334693 0.445606801577081 NA NA prediction 0.551329008669386 Functional Loss - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12864127 chr19:12864126 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_8033 0 0 0 0 2 BEST2 chr19:12864168 5'GT 12864168 Upstream 43bp 7751 chr2 74683313 74683313 1 + T G UCEC 74683314 + 74683294 74683334 41 GGAAGAGGAGGAACAGAGGTGGCTGGATGCCCTGGAGAAGG GGAAGAGGAGGAACAGAGGGGGCTGGATGCCCTGGAGAAGG < 41bp 0.858656735664764 0.583125145324889 NA NA prediction 0.551063180679751 Functional Loss - INO80B ENSG00000115274 CDS Human protein_coding chr2:74683314 chr2:74683313 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8034 0 0 1 0 3 INO80B chr2:74683230 3'AG 74683230 Downstream 84bp 7752 chr2 74683313 74683313 1 + T G UCEC 74683314 + 74683294 74683334 41 GGAAGAGGAGGAACAGAGGTGGCTGGATGCCCTGGAGAAGG GGAAGAGGAGGAACAGAGGGGGCTGGATGCCCTGGAGAAGG < 41bp 0.858656735664764 0.583125145324889 NA NA prediction 0.551063180679751 Functional Loss - INO80B ENSG00000115274 CDS Human protein_coding chr2:74683314 chr2:74683313 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8034 0 0 1 0 3 INO80B chr2:74683275 3'AG 74683275 Downstream 39bp 7753 chr2 74683313 74683313 1 + T G UCEC 74683314 + 74683294 74683334 41 GGAAGAGGAGGAACAGAGGTGGCTGGATGCCCTGGAGAAGG GGAAGAGGAGGAACAGAGGGGGCTGGATGCCCTGGAGAAGG < 41bp 0.858656735664764 0.583125145324889 NA NA prediction 0.551063180679751 Functional Loss - INO80B ENSG00000115274 CDS Human protein_coding chr2:74683314 chr2:74683313 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8034 0 0 1 0 3 INO80B chr2:74683399 5'GT 74683399 Upstream 87bp 7754 chr2 98844712 98844712 1 + T G BLCA 98844713 + 98844693 98844733 41 AAATGGAACAGGGTCACAGTGATCTGGAGAAGATGCAAGAC AAATGGAACAGGGTCACAGGGATCTGGAGAAGATGCAAGAC < 41bp 0.828066913466146 0.552586868009623 NA NA prediction 0.550960090913047 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98844713 chr2:98844712 nonsynonymous SNV 0.363 0 20 hm7G_associated_SNPs_8036 0 0 0 0 2 VWA3B chr2:98844665 3'AG 98844665 Downstream 48bp 7755 chr2 98844712 98844712 1 + T G BLCA 98844713 + 98844693 98844733 41 AAATGGAACAGGGTCACAGTGATCTGGAGAAGATGCAAGAC AAATGGAACAGGGTCACAGGGATCTGGAGAAGATGCAAGAC < 41bp 0.828066913466146 0.552586868009623 NA NA prediction 0.550960090913047 Functional Loss - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98844713 chr2:98844712 nonsynonymous SNV 0.363 0 20 hm7G_associated_SNPs_8036 0 0 0 0 2 VWA3B chr2:98844795 5'GT 98844795 Upstream 84bp 7756 chr11 60885682 60885682 1 + T G CESC 60885683 + 60885663 60885703 41 CACCCGTTCCAACTCGAAGTGCCAGGGCCAGCTGGAGGTCT CACCCGTTCCAACTCGAAGGGCCAGGGCCAGCTGGAGGTCT < 41bp 0.855722277992149 0.580288168502816 NA NA prediction 0.550868218978666 Functional Loss - CD5 ENSG00000110448 CDS Human protein_coding chr11:60885683 chr11:60885682 nonsynonymous SNV 0.730 4 20 hm7G_associated_SNPs_8039 0 0 0 0 1 CD5 chr11:60885647 3'AG 60885647 Downstream 36bp 7757 chr5 176070195 176070195 1 + T G STAD 176070196 + 176070176 176070216 41 AACTCTCCCAGGACTTTGCTGTCTCTGAGAGGGAAGGCCCG AACTCTCCCAGGACTTTGCGGTCTCTGAGAGGGAAGGCCCG < 41bp 0.847504952102898 0.572074311382385 NA NA prediction 0.550861281441027 Functional Loss - EIF4E1B ENSG00000175766 CDS Human protein_coding chr5:176070196 chr5:176070195 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_8040 0 0 0 0 1 EIF4E1B chr5:176070267 5'GT 176070267 Upstream 73bp 7758 chr19 37100894 37100894 1 + T G STAD 37100895 + 37100875 37100915 41 AGTGGCAGCAACTAGACCCTGCTCAGAAGGCGCTTTACAGG AGTGGCAGCAACTAGACCCGGCTCAGAAGGCGCTTTACAGG < 41bp 0.82513583999905 0.549810011260414 NA NA prediction 0.550651657477272 Functional Loss - ZNF382 ENSG00000161298 CDS Human protein_coding chr19:37100895 chr19:37100894 synonymous SNV . 0 20 hm7G_associated_SNPs_8041 0 0 0 0 3 ZNF382 chr19:37100804 3'AG 37100804 Downstream 91bp 7759 chr19 37100894 37100894 1 + T G STAD 37100895 + 37100875 37100915 41 AGTGGCAGCAACTAGACCCTGCTCAGAAGGCGCTTTACAGG AGTGGCAGCAACTAGACCCGGCTCAGAAGGCGCTTTACAGG < 41bp 0.82513583999905 0.549810011260414 NA NA prediction 0.550651657477272 Functional Loss - ZNF382 ENSG00000161298 CDS Human protein_coding chr19:37100895 chr19:37100894 synonymous SNV . 0 20 hm7G_associated_SNPs_8041 0 0 0 0 3 ZNF382 chr19:37100829 3'AG 37100829 Downstream 66bp 7760 chr19 37100894 37100894 1 + T G STAD 37100895 + 37100875 37100915 41 AGTGGCAGCAACTAGACCCTGCTCAGAAGGCGCTTTACAGG AGTGGCAGCAACTAGACCCGGCTCAGAAGGCGCTTTACAGG < 41bp 0.82513583999905 0.549810011260414 NA NA prediction 0.550651657477272 Functional Loss - ZNF382 ENSG00000161298 CDS Human protein_coding chr19:37100895 chr19:37100894 synonymous SNV . 0 20 hm7G_associated_SNPs_8041 0 0 0 0 3 ZNF382 chr19:37100955 5'GT 37100955 Upstream 62bp 7761 chr11 6964840 6964840 1 + T G rs150001435 6964841 + 6964821 6964861 41 AAGAAAAAAAGATGGATAATGGAGAAAGAAATACCAAGGAA AAGAAAAAAAGATGGATAAGGGAGAAAGAAATACCAAGGAA < 41bp 0.820441569710035 0.545144110853978 NA NA prediction 0.550594917712115 Functional Loss - ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6964841 chr11:6964840 nonsynonymous SNV 0.964 1 20 hm7G_associated_SNPs_8042 0 0 1 0 2 ZNF215 chr11:6964777 3'AG 6964777 Downstream 64bp 7762 chr11 6964840 6964840 1 + T G rs150001435 6964841 + 6964821 6964861 41 AAGAAAAAAAGATGGATAATGGAGAAAGAAATACCAAGGAA AAGAAAAAAAGATGGATAAGGGAGAAAGAAATACCAAGGAA < 41bp 0.820441569710035 0.545144110853978 NA NA prediction 0.550594917712115 Functional Loss - ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6964841 chr11:6964840 nonsynonymous SNV 0.964 1 20 hm7G_associated_SNPs_8042 0 0 1 0 2 ZNF215 chr11:6964872 5'GT 6964872 Upstream 33bp 7763 chr1 54534469 54534469 1 + T G SKCM 54534470 + 54534450 54534490 41 ATAAAAAGATGGAAAACTATGCTGGAGCTTCCTGATCAAAC ATAAAAAGATGGAAAACTAGGCTGGAGCTTCCTGATCAAAC < 41bp 0.841900919821586 0.566735679412646 NA NA prediction 0.550330480817879 Functional Loss - TCEANC2 ENSG00000116205 CDS Human protein_coding chr1:54534470 chr1:54534469 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8045 0 0 0 0 1 TCEANC2 chr1:54534429 3'AG 54534429 Downstream 41bp 7764 chr1 31905840 31905840 1 + T G BRCA 31905841 + 31905821 31905861 41 TCCTCAGACCACCGGCAGGTGAACAGCCTGATGCAGACCGA TCCTCAGACCACCGGCAGGGGAACAGCCTGATGCAGACCGA < 41bp 0.856639890818257 0.581494353240483 NA NA prediction 0.550291075155548 Functional Loss - SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31905841 chr1:31905840 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8047 0 0 1 0 1 SERINC2 chr1:31905814 3'AG 31905814 Downstream 27bp 7765 chr4 83827713 83827713 1 + T G COAD 83827714 + 83827694 83827734 41 GAAAGGGTTTACGATTAATTGATGCACTTGTAGAAGAGAAA GAAAGGGTTTACGATTAATGGATGCACTTGTAGAAGAGAAA < 41bp 0.775121553344635 0.464405984272905 NA NA prediction 0.550243106689269 Functional Loss - THAP9 ENSG00000168152 CDS Human protein_coding chr4:83827714 chr4:83827713 nonsynonymous SNV 0.971 3 20 hm7G_associated_SNPs_8048 0 0 1 0 1 THAP9 chr4:83827780 5'GT 83827780 Upstream 68bp 7766 chr4 20255569 20255569 1 + T G STAD 20255570 + 20255550 20255590 41 ACAGTGGACTGTCACGGGCTGGCGCTGCGCAGCGTGCCCAG ACAGTGGACTGTCACGGGCGGGCGCTGCGCAGCGTGCCCAG < 41bp 0.829077395098011 0.554001320186357 NA NA prediction 0.550152149823309 Functional Loss - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20255570 chr4:20255569 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_8050 0 0 1 0 1 SLIT2 chr4:20255617 5'GT 20255617 Upstream 49bp 7767 chr8 15480657 15480657 1 + T G LIHC 15480658 + 15480638 15480678 41 GCTCAATCTTCCGAATGAATGGTGATAAATTCCGAAAATTT GCTCAATCTTCCGAATGAAGGGTGATAAATTCCGAAAATTT < 41bp 0.774987712918004 0.466639917356732 NA NA prediction 0.549975425836007 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15480658 chr8:15480657 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8052 0 0 1 1 1 TUSC3 chr8:15480589 3'AG 15480589 Downstream 69bp 7768 chr19 46807169 46807169 1 + T G COAD 46807170 + 46807150 46807190 41 CTCAGGTCGACCACGGAGCTGCGCAAGGAAAAGTCCCGGGA CTCAGGTCGACCACGGAGCGGCGCAAGGAAAAGTCCCGGGA < 41bp 0.857208159827498 0.582253035158419 NA NA prediction 0.549910249338156 Functional Loss - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46807170 chr19:46807169 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_8054 0 0 0 0 1 HIF3A chr19:46807155 3'AG 46807155 Downstream 15bp 7769 chr10 124058634 124058634 1 + T G HNSC 124058635 + 124058615 124058655 41 CAGGACCTGCTCCACAAAGTGCTGAAGTCCCCCAGGTCAGA CAGGACCTGCTCCACAAAGGGCTGAAGTCCCCCAGGTCAGA < 41bp 0.856730392112999 0.581787717556278 NA NA prediction 0.549885349113442 Functional Loss - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124058635 chr10:124058634 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_8055 0 0 0 0 1 BTBD16 chr10:124058649 5'GT 124058649 Upstream 16bp 7770 chr17 25749587 25749587 1 + T G UCEC 25749588 + 25749568 25749608 41 GGCCCTGTCCTACAGGTCATGAAGGAGAAGGGCAAGAGATC GGCCCTGTCCTACAGGTCAGGAAGGAGAAGGGCAAGAGATC < 41bp 0.774906765381457 0.495538273759781 NA NA prediction 0.549813530762914 Functional Loss - TBC1D3P5 ENSG00000266433 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:25749588 chr17:25749587 . . 0 20 hm7G_associated_SNPs_8057 0 0 0 1 1 TBC1D3P5 chr17:25749583 3'AG 25749583 Downstream 5bp 7771 chr16 18603998 18603998 1 + T G GBM 18603999 + 18603979 18604019 41 AGGCTCAAGGTGCTGTAGATGAGGCTGCGGTCGGCCATCAC AGGCTCAAGGTGCTGTAGAGGAGGCTGCGGTCGGCCATCAC < 41bp 0.79779198066773 0.522947133587563 NA NA prediction 0.549689694160334 Functional Loss - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18603999 chr16:18603998 . . 0 20 hm7G_associated_SNPs_8058 0 0 1 0 1 ABCC6P1 chr16:18604038 5'GT 18604038 Upstream 41bp 7772 chr1 32502560 32502560 1 + T G SKCM 32502561 + 32502541 32502581 41 TTTCTAGAGCTGTCCTACTTGAATGGAGTACCTGAACCCTC TTTCTAGAGCTGTCCTACTGGAATGGAGTACCTGAACCCTC < 41bp 0.846059029460673 0.571284922554815 NA NA prediction 0.549548213811716 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502561 chr1:32502560 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8059 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 50bp 7773 chr1 32502560 32502560 1 + T G SKCM 32502561 + 32502541 32502581 41 TTTCTAGAGCTGTCCTACTTGAATGGAGTACCTGAACCCTC TTTCTAGAGCTGTCCTACTGGAATGGAGTACCTGAACCCTC < 41bp 0.846059029460673 0.571284922554815 NA NA prediction 0.549548213811716 Functional Loss - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502561 chr1:32502560 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8059 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 85bp 7774 chr3 126382336 126382336 1 + T G UCEC 126382337 + 126382317 126382357 41 GATGCAGAGACTGGCAAGGTGGTCATCATCTCTCAGGTAAC GATGCAGAGACTGGCAAGGGGGTCATCATCTCTCAGGTAAC < 41bp 0.807218502827045 0.532446223241994 NA NA prediction 0.549544559170102 Functional Loss - NUP210P1 ENSG00000198284 ncRNA_exonic Human transcribed_processed_pseudogene chr3:126382337 chr3:126382336 . . 0 20 hm7G_associated_SNPs_8060 0 0 0 0 1 NUP210P1 chr3:126382352 5'GT 126382352 Upstream 17bp 7775 chr1 109339300 109339300 1 + T G rs537758469 109339301 + 109339281 109339321 41 TAAAGATAGAAAATGAGAGTGACATGATTCGTAACTGGAGT TAAAGATAGAAAATGAGAGGGACATGATTCGTAACTGGAGT < 41bp 0.823126234826311 0.5484442883983 NA NA prediction 0.549363892856022 Functional Loss - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109339301 chr1:109339300 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8063 0 0 1 0 2 STXBP3 chr1:109339242 3'AG 109339242 Downstream 59bp 7776 chr1 109339300 109339300 1 + T G rs537758469 109339301 + 109339281 109339321 41 TAAAGATAGAAAATGAGAGTGACATGATTCGTAACTGGAGT TAAAGATAGAAAATGAGAGGGACATGATTCGTAACTGGAGT < 41bp 0.823126234826311 0.5484442883983 NA NA prediction 0.549363892856022 Functional Loss - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109339301 chr1:109339300 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8063 0 0 1 0 2 STXBP3 chr1:109339348 5'GT 109339348 Upstream 49bp 7777 chr3 97506897 97506897 1 + T G LUAD 97506898 + 97506878 97506918 41 ATGGATCTTAGAGATGCAGTGACATCTGTAAAAGTGTCTCA ATGGATCTTAGAGATGCAGGGACATCTGTAAAAGTGTCTCA < 41bp 0.828298298172121 0.553751533705315 NA NA prediction 0.549093528933611 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97506898 chr3:97506897 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8066 0 0 0 1 2 ARL6 chr3:97506834 3'AG 97506834 Downstream 64bp 7778 chr3 97506897 97506897 1 + T G LUAD 97506898 + 97506878 97506918 41 ATGGATCTTAGAGATGCAGTGACATCTGTAAAAGTGTCTCA ATGGATCTTAGAGATGCAGGGACATCTGTAAAAGTGTCTCA < 41bp 0.828298298172121 0.553751533705315 NA NA prediction 0.549093528933611 Functional Loss - ARL6 ENSG00000113966 CDS Human protein_coding chr3:97506898 chr3:97506897 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8066 0 0 0 1 2 ARL6 chr3:97506963 5'GT 97506963 Upstream 67bp 7779 chr4 159568032 159568032 1 + T G UCEC 159568033 + 159568013 159568053 41 CAATAAGCATGCGCAGCTGTGGATGGAGAGTACTCATTGTC CAATAAGCATGCGCAGCTGGGGATGGAGAGTACTCATTGTC < 41bp 0.774541689853222 0.466717012830048 NA NA prediction 0.549083379706444 Functional Loss - RXFP1 ENSG00000171509 CDS Human protein_coding chr4:159568033 chr4:159568032 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8068 0 0 0 0 1 RXFP1 chr4:159567943 3'AG 159567943 Downstream 90bp 7780 chr1 1389856 1389856 1 + T G PRAD 1389857 + 1389837 1389877 41 CGTCCCGCATCACGGTGCTTGAGGCGCTGCGGCACCCCATC CGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCCATC < 41bp 0.774514216565829 0.441918713769273 NA NA prediction 0.549028433131657 Functional Loss - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389857 chr1:1389856 synonymous SNV . 0 20 hm7G_associated_SNPs_8069 0 0 0 0 1 ATAD3C chr1:1389880 5'GT 1389880 Upstream 25bp 7781 chr13 25899186 25899186 1 + T G KIRC 25899187 + 25899167 25899207 41 CACCACCTGGACTTCAACATGAATATGCAGCTCCTGCTGAG CACCACCTGGACTTCAACAGGAATATGCAGCTCCTGCTGAG < 41bp 0.774466965502938 0.471133299174151 NA NA prediction 0.548933931005876 Functional Loss - NUP58 ENSG00000139496 CDS Human protein_coding chr13:25899187 chr13:25899186 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8071 0 0 1 0 2 NUP58 chr13:25899127 3'AG 25899127 Downstream 60bp 7782 chr13 25899186 25899186 1 + T G KIRC 25899187 + 25899167 25899207 41 CACCACCTGGACTTCAACATGAATATGCAGCTCCTGCTGAG CACCACCTGGACTTCAACAGGAATATGCAGCTCCTGCTGAG < 41bp 0.774466965502938 0.471133299174151 NA NA prediction 0.548933931005876 Functional Loss - NUP58 ENSG00000139496 CDS Human protein_coding chr13:25899187 chr13:25899186 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8071 0 0 1 0 2 NUP58 chr13:25899206 5'GT 25899206 Upstream 21bp 7783 chr2 28627176 28627176 1 + T G SKCM 28627177 + 28627157 28627197 41 GCCCTCCCAAGACCTGGCGTGATCAAGACCATTGGCACCAC GCCCTCCCAAGACCTGGCGGGATCAAGACCATTGGCACCAC < 41bp 0.863203054501802 0.588774080468615 NA NA prediction 0.548857948066373 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28627177 chr2:28627176 nonsynonymous SNV 0.915 3 20 hm7G_associated_SNPs_8072 0 0 1 0 1 FOSL2 chr2:28627225 5'GT 28627225 Upstream 50bp 7784 chr2 109098194 109098194 1 + T G LUSC 109098195 + 109098175 109098215 41 AGCAGTCAGAGCAACTGGATGTGGAAAAAGAACGTGCTAAT AGCAGTCAGAGCAACTGGAGGTGGAAAAAGAACGTGCTAAT < 41bp 0.774359957491235 0.482728877077835 NA NA prediction 0.548719914982469 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109098195 chr2:109098194 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8073 0 0 1 0 2 GCC2 chr2:109098153 3'AG 109098153 Downstream 42bp 7785 chr2 109098194 109098194 1 + T G LUSC 109098195 + 109098175 109098215 41 AGCAGTCAGAGCAACTGGATGTGGAAAAAGAACGTGCTAAT AGCAGTCAGAGCAACTGGAGGTGGAAAAAGAACGTGCTAAT < 41bp 0.774359957491235 0.482728877077835 NA NA prediction 0.548719914982469 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109098195 chr2:109098194 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8073 0 0 1 0 2 GCC2 chr2:109098272 5'GT 109098272 Upstream 79bp 7786 chr1 149761697 149761697 1 + T G LUAD 149761698 + 149761678 149761718 41 CTGAGCTGTGAAACAAAGTTGCTCTTGCAGAGGCCTGGTTT CTGAGCTGTGAAACAAAGTGGCTCTTGCAGAGGCCTGGTTT < 41bp 0.853960845377172 0.579664933060496 NA NA prediction 0.548591824633352 Functional Loss - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149761698 chr1:149761697 nonsynonymous SNV 0.034 1 20 hm7G_associated_SNPs_8075 0 0 0 0 1 FCGR1A chr1:149761610 3'AG 149761610 Downstream 88bp 7787 chr6 49489368 49489368 1 + T G READ 49489369 + 49489349 49489389 41 TATACACAGGGCTGCAGAGTGAGTTATATGATGTTTCCAAA TATACACAGGGCTGCAGAGGGAGTTATATGATGTTTCCAAA < 41bp 0.818879021505881 0.54461247080816 NA NA prediction 0.548533101395441 Functional Loss - GLYATL3 ENSG00000203972 CDS Human protein_coding chr6:49489369 chr6:49489368 nonsynonymous SNV 0.978 0 20 hm7G_associated_SNPs_8076 0 0 0 0 1 GLYATL3 chr6:49489358 3'AG 49489358 Downstream 11bp 7788 chr4 158255171 158255171 1 + T G LUSC 158255172 + 158255152 158255192 41 CCTTTTCCAGATTGGCTACTGGAGTGAAGTGGACAAAATGG CCTTTTCCAGATTGGCTACGGGAGTGAAGTGGACAAAATGG < 41bp 0.822053432211913 0.547846274217517 NA NA prediction 0.548414315988794 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158255172 chr4:158255171 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8077 0 0 1 0 1 GRIA2 chr4:158255162 3'AG 158255162 Downstream 10bp 7789 chr1 42621233 42621233 1 + T G STAD 42621234 + 42621214 42621254 41 GCTAACGACGACTGTGAGCTGTGTGTGAACGTTGCGTGTAC GCTAACGACGACTGTGAGCGGTGTGTGAACGTTGCGTGTAC < 41bp 0.812365673510435 0.53821846817501 NA NA prediction 0.548294410670851 Functional Loss - GUCA2B ENSG00000044012 CDS Human protein_coding chr1:42621234 chr1:42621233 nonsynonymous SNV 0.872 3 20 hm7G_associated_SNPs_8078 0 0 0 0 1 GUCA2B chr1:42621206 3'AG 42621206 Downstream 28bp 7790 chr12 109834218 109834218 1 + T G UCEC 109834219 + 109834199 109834239 41 GCCGACAACGCTTACCGAATGATGTGTGCTGAACTAAATAA GCCGACAACGCTTACCGAAGGATGTGTGCTGAACTAAATAA < 41bp 0.774136522862182 0.45114620259569 NA NA prediction 0.548273045724365 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109834219 chr12:109834218 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8079 0 0 0 0 1 MYO1H chr12:109834189 3'AG 109834189 Downstream 30bp 7791 chr17 30678826 30678826 1 + T G LUSC 30678827 + 30678807 30678847 41 ATTGTAATAGAGATTTTGATGATGAGAAGATCCTTATTCAG ATTGTAATAGAGATTTTGAGGATGAGAAGATCCTTATTCAG < 41bp 0.827260299283096 0.553189714013975 NA NA prediction 0.548141170538241 Functional Loss - ZNF207 ENSG00000010244 CDS Human processed_transcript chr17:30678827 chr17:30678826 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8080 0 0 1 0 2 ZNF207 chr17:30678758 3'AG 30678758 Downstream 69bp 7792 chr17 30678826 30678826 1 + T G LUSC 30678827 + 30678807 30678847 41 ATTGTAATAGAGATTTTGATGATGAGAAGATCCTTATTCAG ATTGTAATAGAGATTTTGAGGATGAGAAGATCCTTATTCAG < 41bp 0.827260299283096 0.553189714013975 NA NA prediction 0.548141170538241 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30678827 chr17:30678826 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8080 0 0 1 0 2 ZNF207 chr17:30678805 3'AG 30678805 Downstream 22bp 7793 chr12 132241053 132241053 1 + T G LUSC 132241054 + 132241034 132241074 41 AAGAGGCTCCCACAGACTCTGCTCCCGAGAAGCCAAGTGAT AAGAGGCTCCCACAGACTCGGCTCCCGAGAAGCCAAGTGAT < 41bp 0.863083594196628 0.589064182491804 NA NA prediction 0.548038823409647 Functional Loss - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132241054 chr12:132241053 synonymous SNV . 0 20 hm7G_associated_SNPs_8081 0 0 1 0 1 SFSWAP chr12:132241018 3'AG 132241018 Downstream 36bp 7794 chr7 50455062 50455062 1 + T G COAD 50455063 + 50455043 50455083 41 TTGGTAAACCTCACAAATGTGGATATTGTGGCCGAAGCTAT TTGGTAAACCTCACAAATGGGGATATTGTGGCCGAAGCTAT < 41bp 0.796160544541404 0.522223850457153 NA NA prediction 0.547873388168502 Functional Loss - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50455063 chr7:50455062 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8085 0 0 0 0 1 IKZF1 chr7:50455043 3'AG 50455043 Downstream 20bp 7795 chr1 19638851 19638851 1 + T G rs562851474 19638852 + 19638832 19638872 41 CTGGCGGCGGATCTGGACGTGGTGAGCCGGACCGGGGGCAG CTGGCGGCGGATCTGGACGGGGTGAGCCGGACCGGGGGCAG < 41bp 0.77390292717427 0.476048443441851 NA NA prediction 0.547805854348539 Functional Loss - PQLC2 ENSG00000040487 UTR5 Human protein_coding chr1:19638852 chr1:19638851 . . 0 20 hm7G_associated_SNPs_8086 0 0 1 0 1 PQLC2 chr1:19638852 5'GT 19638852 Upstream 2bp 7796 chr17 9757840 9757840 1 + T G LUSC 9757841 + 9757821 9757861 41 TATGCCTTGCTGTCAACCTTGCAGCTGATGTACACCGTGGG TATGCCTTGCTGTCAACCTGGCAGCTGATGTACACCGTGGG < 41bp 0.853015232425678 0.579367205525745 NA NA prediction 0.547296053799865 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9757841 chr17:9757840 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_8093 0 0 1 0 2 GLP2R chr17:9757812 3'AG 9757812 Downstream 29bp 7797 chr17 9757840 9757840 1 + T G LUSC 9757841 + 9757821 9757861 41 TATGCCTTGCTGTCAACCTTGCAGCTGATGTACACCGTGGG TATGCCTTGCTGTCAACCTGGCAGCTGATGTACACCGTGGG < 41bp 0.853015232425678 0.579367205525745 NA NA prediction 0.547296053799865 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9757841 chr17:9757840 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_8093 0 0 1 0 2 GLP2R chr17:9757918 5'GT 9757918 Upstream 79bp 7798 chr12 112327906 112327906 1 + T G LGG 112327907 + 112327887 112327927 41 TTGGAAGTATAACCGGGAATGCAAACTCCTAAGAGATACTC TTGGAAGTATAACCGGGAAGGCAAACTCCTAAGAGATACTC < 41bp 0.857129291475929 0.583500432263687 NA NA prediction 0.547257718424482 Functional Loss - MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112327907 chr12:112327906 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8094 0 0 1 0 2 MAPKAPK5 chr12:112327844 3'AG 112327844 Downstream 63bp 7799 chr12 112327906 112327906 1 + T G LGG 112327907 + 112327887 112327927 41 TTGGAAGTATAACCGGGAATGCAAACTCCTAAGAGATACTC TTGGAAGTATAACCGGGAAGGCAAACTCCTAAGAGATACTC < 41bp 0.857129291475929 0.583500432263687 NA NA prediction 0.547257718424482 Functional Loss - MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112327907 chr12:112327906 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8094 0 0 1 0 2 MAPKAPK5 chr12:112327948 5'GT 112327948 Upstream 43bp 7800 chr17 73487137 73487137 1 + T G STAD 73487138 + 73487118 73487158 41 CTCTCCCACCAGGAAATGCTGCGCTGCATTTGGGGCCACTT CTCTCCCACCAGGAAATGCGGCGCTGCATTTGGGGCCACTT < 41bp 0.77359619210909 0.437468642717687 NA NA prediction 0.547192384218181 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73487138 chr17:73487137 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_8095 0 0 1 0 2 TMEM94 chr17:73487130 3'AG 73487130 Downstream 8bp 7801 chr17 73487137 73487137 1 + T G STAD 73487138 + 73487118 73487158 41 CTCTCCCACCAGGAAATGCTGCGCTGCATTTGGGGCCACTT CTCTCCCACCAGGAAATGCGGCGCTGCATTTGGGGCCACTT < 41bp 0.77359619210909 0.437468642717687 NA NA prediction 0.547192384218181 Functional Loss - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73487138 chr17:73487137 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_8095 0 0 1 0 2 TMEM94 chr17:73487234 5'GT 73487234 Upstream 98bp 7802 chr19 10157219 10157219 1 + T G rs11883054 10157220 + 10157200 10157240 41 AGAGGATCAATTGCATCTGTGGACAAGTGAGGGGGCTATGG AGAGGATCAATTGCATCTGGGGACAAGTGAGGGGGCTATGG < 41bp 0.797319505633549 0.523746146303682 NA NA prediction 0.547146718659734 Functional Loss - C3P1 ENSG00000167798 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:10157220 chr19:10157219 . . 0 20 hm7G_associated_SNPs_8096 0 0 0 0 1 C3P1 chr19:10157225 5'GT 10157225 Upstream 7bp 7803 chr7 80303349 80303349 1 + T G ESCA 80303350 + 80303330 80303370 41 TGTTCAGAAGTCAAGTAACTGGAAAAATAAACCTCCTTGGC TGTTCAGAAGTCAAGTAACGGGAAAAATAAACCTCCTTGGC < 41bp 0.773474480669307 0.476419114038499 NA NA prediction 0.546948961338614 Functional Loss - CD36 ENSG00000135218 CDS Human protein_coding chr7:80303350 chr7:80303349 synonymous SNV . 0 20 hm7G_associated_SNPs_8098 0 0 0 0 1 CD36 chr7:80303299 3'AG 80303299 Downstream 51bp 7804 chr1 220791812 220791812 1 + T G UCEC 220791813 + 220791793 220791833 41 AAGTATGATGGGCCTGAAGTGGATGTGTGGAGTCTGGGCGT AAGTATGATGGGCCTGAAGGGGATGTGTGGAGTCTGGGCGT < 41bp 0.849418310905245 0.575996804901713 NA NA prediction 0.546843012007064 Functional Loss - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220791813 chr1:220791812 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_8099 0 0 1 0 1 MARK1 chr1:220791888 5'GT 220791888 Upstream 77bp 7805 chr10 26880327 26880327 1 + T G PRAD 26880328 + 26880308 26880348 41 TGGAAAAGGCCCAAACACATGCTGAAACATGGAAGGTAAAA TGGAAAAGGCCCAAACACAGGCTGAAACATGGAAGGTAAAA < 41bp 0.773285543040666 0.491835970491618 NA NA prediction 0.546571086081333 Functional Loss - FAM238A ENSG00000233261 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:26880328 chr10:26880327 . . 0 20 hm7G_associated_SNPs_8102 0 0 0 0 2 FAM238A chr10:26880239 3'AG 26880239 Downstream 89bp 7806 chr10 26880327 26880327 1 + T G PRAD 26880328 + 26880308 26880348 41 TGGAAAAGGCCCAAACACATGCTGAAACATGGAAGGTAAAA TGGAAAAGGCCCAAACACAGGCTGAAACATGGAAGGTAAAA < 41bp 0.773285543040666 0.491835970491618 NA NA prediction 0.546571086081333 Functional Loss - FAM238A ENSG00000233261 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:26880328 chr10:26880327 . . 0 20 hm7G_associated_SNPs_8102 0 0 0 0 2 FAM238A chr10:26880342 5'GT 26880342 Upstream 16bp 7807 chrX 54952041 54952041 1 + T G UCEC 54952042 + 54952022 54952062 41 CAGATGTTTCGAGTCAATCTGAAAGAAATTGATAAGCAAAG CAGATGTTTCGAGTCAATCGGAAAGAAATTGATAAGCAAAG < 41bp 0.827934623062996 0.554786067188849 NA NA prediction 0.546297111748295 Functional Loss - TRO ENSG00000067445 CDS Human protein_coding chrX:54952042 chrX:54952041 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_8103 0 0 1 0 2 TRO chrX:54952025 3'AG 54952025 Downstream 17bp 7808 chrX 54952041 54952041 1 + T G UCEC 54952042 + 54952022 54952062 41 CAGATGTTTCGAGTCAATCTGAAAGAAATTGATAAGCAAAG CAGATGTTTCGAGTCAATCGGAAAGAAATTGATAAGCAAAG < 41bp 0.827934623062996 0.554786067188849 NA NA prediction 0.546297111748295 Functional Loss - TRO ENSG00000067445 CDS Human protein_coding chrX:54952042 chrX:54952041 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_8103 0 0 1 0 2 TRO chrX:54952116 5'GT 54952116 Upstream 76bp 7809 chr3 44449032 44449032 1 + T G LIHC 44449033 + 44449013 44449053 41 ATTTCTAGTATACAAATGGTGGATTGTTGTAAGAGACTTCT ATTTCTAGTATACAAATGGGGGATTGTTGTAAGAGACTTCT < 41bp 0.808297909196616 0.535228291076867 NA NA prediction 0.546139236239498 Functional Loss - TCAIM ENSG00000179152 CDS Human protein_coding chr3:44449033 chr3:44449032 nonsynonymous SNV 0.968 2 20 hm7G_associated_SNPs_8105 0 0 1 0 1 TCAIM chr3:44448934 3'AG 44448934 Downstream 99bp 7810 chr1 36379500 36379500 1 + T G SKCM 36379501 + 36379481 36379521 41 GCTACGCAGTGTGTGCAGGTGAAGAACGTGGTCAAGACCTC GCTACGCAGTGTGTGCAGGGGAAGAACGTGGTCAAGACCTC < 41bp 0.858721543344027 0.585905928644275 NA NA prediction 0.545631229399505 Functional Loss - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36379501 chr1:36379500 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8109 0 0 1 0 1 AGO1 chr1:36379443 3'AG 36379443 Downstream 58bp 7811 chr1 156169976 156169976 1 + T G PAAD 156169977 + 156169957 156169997 41 AGTAACACAGTCAAATCACTGGTGGCTGGTGGCTCAGCCTC AGTAACACAGTCAAATCACGGGTGGCTGGTGGCTCAGCCTC < 41bp 0.772759097505357 0.438365359097047 NA NA prediction 0.545518195010714 Functional Loss - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156169977 chr1:156169976 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8111 0 0 1 0 1 SLC25A44 chr1:156170019 5'GT 156170019 Upstream 44bp 7812 chr11 123476122 123476122 1 + T G LUAD 123476123 + 123476103 123476143 41 CCAGATGCCAGTCCACAGCTGCCCAAGAAATCCATCACCAA CCAGATGCCAGTCCACAGCGGCCCAAGAAATCCATCACCAA < 41bp 0.86840502938792 0.59580637800461 NA NA prediction 0.545197302766619 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123476123 chr11:123476122 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_8113 0 0 0 0 2 GRAMD1B chr11:123476030 3'AG 123476030 Downstream 93bp 7813 chr11 123476122 123476122 1 + T G LUAD 123476123 + 123476103 123476143 41 CCAGATGCCAGTCCACAGCTGCCCAAGAAATCCATCACCAA CCAGATGCCAGTCCACAGCGGCCCAAGAAATCCATCACCAA < 41bp 0.86840502938792 0.59580637800461 NA NA prediction 0.545197302766619 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123476123 chr11:123476122 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_8113 0 0 0 0 2 GRAMD1B chr11:123476186 5'GT 123476186 Upstream 65bp 7814 chr7 55479727 55479727 1 + T G BRCA 55479728 + 55479708 55479748 41 AATGAAACAGACCGGCTGGTGCACTGGTGCCACGGCGCCCC AATGAAACAGACCGGCTGGGGCACTGGTGCCACGGCGCCCC < 41bp 0.864935894906257 0.592406784796415 NA NA prediction 0.545058220219685 Functional Loss - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55479728 chr7:55479727 nonsynonymous SNV 0.917 4 20 hm7G_associated_SNPs_8116 0 0 0 0 1 LANCL2 chr7:55479782 5'GT 55479782 Upstream 56bp 7815 chr19 50000782 50000782 1 + T G UCEC 50000783 + 50000763 50000803 41 TCCTATCCTTTCAGGCTATTGAGGGCACCTACATTGACAAG TCCTATCCTTTCAGGCTATGGAGGGCACCTACATTGACAAG < 41bp 0.852207314056213 0.579681283498216 NA NA prediction 0.545052061115995 Functional Loss - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50000783 chr19:50000782 nonsynonymous SNV 0.865 2 20 hm7G_associated_SNPs_8117 0 0 1 0 2 RPS11 chr19:50000777 3'AG 50000777 Downstream 6bp 7816 chr19 50000782 50000782 1 + T G UCEC 50000783 + 50000763 50000803 41 TCCTATCCTTTCAGGCTATTGAGGGCACCTACATTGACAAG TCCTATCCTTTCAGGCTATGGAGGGCACCTACATTGACAAG < 41bp 0.852207314056213 0.579681283498216 NA NA prediction 0.545052061115995 Functional Loss - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50000783 chr19:50000782 nonsynonymous SNV 0.865 2 20 hm7G_associated_SNPs_8117 0 0 1 0 2 RPS11 chr19:50000852 5'GT 50000852 Upstream 71bp 7817 chr18 6882171 6882171 1 + T G HNSC 6882172 + 6882152 6882192 41 TTGATGCCAAGTTTAATGCTGATAAATTTAAATGGGACAAA TTGATGCCAAGTTTAATGCGGATAAATTTAAATGGGACAAA < 41bp 0.836078691263827 0.563572253644518 NA NA prediction 0.545012875238619 Functional Loss - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6882172 chr18:6882171 synonymous SNV . 0 20 hm7G_associated_SNPs_8118 0 0 0 0 1 ARHGAP28 chr18:6882136 3'AG 6882136 Downstream 36bp 7818 chr6 84798852 84798852 1 + T G SKCM 84798853 + 84798833 84798873 41 GATTCAGAATGAACAGCTTTGTGTCAGACTTTGGAAGACCT GATTCAGAATGAACAGCTTGGTGTCAGACTTTGGAAGACCT < 41bp 0.82589144760431 0.553480368461247 NA NA prediction 0.544822158286126 Functional Loss - MRAP2 ENSG00000135324 CDS Human protein_coding chr6:84798853 chr6:84798852 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8119 0 0 0 0 1 MRAP2 chr6:84798810 3'AG 84798810 Downstream 43bp 7819 chr1 156206195 156206195 1 + T G STAD 156206196 + 156206176 156206216 41 GAGGCCGAGAACCAGCAGCTGGCAGATGCCGTCCTGGCAGG GAGGCCGAGAACCAGCAGCGGGCAGATGCCGTCCTGGCAGG < 41bp 0.77230451016641 0.439603547117165 NA NA prediction 0.54460902033282 Functional Loss - PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156206196 chr1:156206195 nonsynonymous SNV 0.909 2 20 hm7G_associated_SNPs_8121 0 0 0 0 2 PMF1;PMF1-BGLAP chr1:156206140 3'AG 156206140 Downstream 56bp 7820 chr1 156206195 156206195 1 + T G STAD 156206196 + 156206176 156206216 41 GAGGCCGAGAACCAGCAGCTGGCAGATGCCGTCCTGGCAGG GAGGCCGAGAACCAGCAGCGGGCAGATGCCGTCCTGGCAGG < 41bp 0.77230451016641 0.439603547117165 NA NA prediction 0.54460902033282 Functional Loss - PMF1;PMF1-BGLAP ENSG00000160783;ENSG00000260238 CDS Human other chr1:156206196 chr1:156206195 nonsynonymous SNV 0.909 2 20 hm7G_associated_SNPs_8121 0 0 0 0 2 PMF1;PMF1-BGLAP chr1:156206274 5'GT 156206274 Upstream 80bp 7821 chr19 58196721 58196721 1 + T G HNSC 58196722 + 58196702 58196742 41 TTCCTGTACTGCGATGTGATGCTGGAGAACTTTGCACATGT TTCCTGTACTGCGATGTGAGGCTGGAGAACTTTGCACATGT < 41bp 0.772296224925985 0.454288910150097 NA NA prediction 0.54459244985197 Functional Loss - ZNF551 ENSG00000204519 CDS Human protein_coding chr19:58196722 chr19:58196721 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_8122 0 0 1 0 1 ZNF551 chr19:58196753 5'GT 58196753 Upstream 33bp 7822 chr14 74417148 74417148 1 + T G UCEC 74417149 + 74417129 74417169 41 ACAGACACCGTGTATGACGTGGTGGTGTCGGGTGGAGGCCT ACAGACACCGTGTATGACGGGGTGGTGTCGGGTGGAGGCCT < 41bp 0.840462582038025 0.568235775915926 NA NA prediction 0.544453612244199 Functional Loss - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74417149 chr14:74417148 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_8123 0 0 1 0 1 COQ6 chr14:74417198 5'GT 74417198 Upstream 51bp 7823 chr19 8538587 8538587 1 + T G UCEC 8538588 + 8538568 8538608 41 GGATTTGGAATAAATAAAATGGGAGGTAAGAAATTTAAAAT GGATTTGGAATAAATAAAAGGGGAGGTAAGAAATTTAAAAT < 41bp 0.77222465726519 0.460595808253785 NA NA prediction 0.544449314530381 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8538588 chr19:8538587 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_8124 0 0 1 0 2 HNRNPM chr19:8538548 3'AG 8538548 Downstream 40bp 7824 chr19 8538587 8538587 1 + T G UCEC 8538588 + 8538568 8538608 41 GGATTTGGAATAAATAAAATGGGAGGTAAGAAATTTAAAAT GGATTTGGAATAAATAAAAGGGGAGGTAAGAAATTTAAAAT < 41bp 0.77222465726519 0.460595808253785 NA NA prediction 0.544449314530381 Functional Loss - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8538588 chr19:8538587 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_8124 0 0 1 0 2 HNRNPM chr19:8538592 5'GT 8538592 Upstream 6bp 7825 chr17 65905780 65905780 1 + T G UCEC 65905781 + 65905761 65905801 41 AAAAAATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTA AAAAAATAAAAATAGAGCCGGATTCTGAAAAAGATGAGGTA < 41bp 0.77215762268992 0.464786149242363 NA NA prediction 0.54431524537984 Functional Loss - BPTF ENSG00000171634 CDS Human protein_coding chr17:65905781 chr17:65905780 synonymous SNV . 0 20 hm7G_associated_SNPs_8127 0 0 1 0 2 BPTF chr17:65905698 3'AG 65905698 Downstream 83bp 7826 chr17 65905780 65905780 1 + T G UCEC 65905781 + 65905761 65905801 41 AAAAAATAAAAATAGAGCCTGATTCTGAAAAAGATGAGGTA AAAAAATAAAAATAGAGCCGGATTCTGAAAAAGATGAGGTA < 41bp 0.77215762268992 0.464786149242363 NA NA prediction 0.54431524537984 Functional Loss - BPTF ENSG00000171634 CDS Human protein_coding chr17:65905781 chr17:65905780 synonymous SNV . 0 20 hm7G_associated_SNPs_8127 0 0 1 0 2 BPTF chr17:65905877 5'GT 65905877 Upstream 98bp 7827 chr1 86047631 86047631 1 + T G UCEC 86047632 + 86047612 86047652 41 TCAGTCAGAGGGCAGACCCTGTGAATATAACTCCAGAATCT TCAGTCAGAGGGCAGACCCGGTGAATATAACTCCAGAATCT < 41bp 0.833286554841942 0.561152250133896 NA NA prediction 0.544268609416092 Functional Loss - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86047632 chr1:86047631 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8128 0 0 1 0 1 CYR61 chr1:86047611 3'AG 86047611 Downstream 21bp 7828 chr14 58811415 58811415 1 + T G PAAD 58811416 + 58811396 58811436 41 ATATTTTATCTTTACAGCCTGAGGAAGAACTTGATCCTGAA ATATTTTATCTTTACAGCCGGAGGAAGAACTTGATCCTGAA < 41bp 0.82157880389772 0.549449388569565 NA NA prediction 0.54425883065631 Functional Loss - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58811416 chr14:58811415 synonymous SNV . 0 20 hm7G_associated_SNPs_8129 0 0 1 0 2 ARID4A chr14:58811413 3'AG 58811413 Downstream 3bp 7829 chr14 58811415 58811415 1 + T G PAAD 58811416 + 58811396 58811436 41 ATATTTTATCTTTACAGCCTGAGGAAGAACTTGATCCTGAA ATATTTTATCTTTACAGCCGGAGGAAGAACTTGATCCTGAA < 41bp 0.82157880389772 0.549449388569565 NA NA prediction 0.54425883065631 Functional Loss - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58811416 chr14:58811415 synonymous SNV . 0 20 hm7G_associated_SNPs_8129 0 0 1 0 2 ARID4A chr14:58811485 5'GT 58811485 Upstream 71bp 7830 chr11 62038380 62038380 1 + T G SARC 62038381 + 62038361 62038401 41 TGCCCCTTATTGGAGAATGTGATTTCCAAGACAATCAATCC TGCCCCTTATTGGAGAATGGGATTTCCAAGACAATCAATCC < 41bp 0.772051273884135 0.472616519483101 NA NA prediction 0.54410254776827 Functional Loss - SCGB2A2 ENSG00000110484 CDS Human protein_coding chr11:62038381 chr11:62038380 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_8131 0 0 0 0 1 SCGB2A2 chr11:62038353 3'AG 62038353 Downstream 28bp 7831 chr2 122516297 122516297 1 + T G COAD 122516298 + 122516278 122516318 41 GTGACTAGTTCCAAAGAGGTGTTTGAAAGCTCGAGAACATT GTGACTAGTTCCAAAGAGGGGTTTGAAAGCTCGAGAACATT < 41bp 0.816449721314534 0.544436424142059 NA NA prediction 0.54402659434495 Functional Loss - TSN ENSG00000211460 CDS Human protein_coding chr2:122516298 chr2:122516297 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8132 0 0 1 0 2 TSN chr2:122516286 3'AG 122516286 Downstream 12bp 7832 chr2 122516297 122516297 1 + T G COAD 122516298 + 122516278 122516318 41 GTGACTAGTTCCAAAGAGGTGTTTGAAAGCTCGAGAACATT GTGACTAGTTCCAAAGAGGGGTTTGAAAGCTCGAGAACATT < 41bp 0.816449721314534 0.544436424142059 NA NA prediction 0.54402659434495 Functional Loss - TSN ENSG00000211460 CDS Human protein_coding chr2:122516298 chr2:122516297 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8132 0 0 1 0 2 TSN chr2:122516382 5'GT 122516382 Upstream 86bp 7833 chr1 77516032 77516032 1 + T G LUSC 77516033 + 77516013 77516053 41 ATCAATGTTTATGGCATGGTGCCCCCAGACTTCTGCAGGTA ATCAATGTTTATGGCATGGGGCCCCCAGACTTCTGCAGGTA < 41bp 0.855521845155714 0.583563574229287 NA NA prediction 0.543916541852853 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77516033 chr1:77516032 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8134 0 0 0 0 3 ST6GALNAC5 chr1:77515943 3'AG 77515943 Downstream 90bp 7834 chr1 77516032 77516032 1 + T G LUSC 77516033 + 77516013 77516053 41 ATCAATGTTTATGGCATGGTGCCCCCAGACTTCTGCAGGTA ATCAATGTTTATGGCATGGGGCCCCCAGACTTCTGCAGGTA < 41bp 0.855521845155714 0.583563574229287 NA NA prediction 0.543916541852853 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77516033 chr1:77516032 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8134 0 0 0 0 3 ST6GALNAC5 chr1:77515947 3'AG 77515947 Downstream 86bp 7835 chr1 77516032 77516032 1 + T G LUSC 77516033 + 77516013 77516053 41 ATCAATGTTTATGGCATGGTGCCCCCAGACTTCTGCAGGTA ATCAATGTTTATGGCATGGGGCCCCCAGACTTCTGCAGGTA < 41bp 0.855521845155714 0.583563574229287 NA NA prediction 0.543916541852853 Functional Loss - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77516033 chr1:77516032 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8134 0 0 0 0 3 ST6GALNAC5 chr1:77516050 5'GT 77516050 Upstream 19bp 7836 chr1 17707593 17707593 1 + T G UCEC 17707594 + 17707574 17707614 41 TGCCATCCTGCTTGTGAATTGCAACCCTGCTGATGTGGGCC TGCCATCCTGCTTGTGAATGGCAACCCTGCTGATGTGGGCC < 41bp 0.771934236747697 0.462823595631608 NA NA prediction 0.543868473495395 Functional Loss - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17707594 chr1:17707593 . 0.774 1 20 hm7G_associated_SNPs_8135 0 0 0 0 1 PADI6 chr1:17707542 3'AG 17707542 Downstream 52bp 7837 chr10 71008449 71008449 1 + T G BLCA 71008450 + 71008430 71008470 41 CTGGCCACGGTCAGGATGCTGCCCACCTACGTCTGCGGGCT CTGGCCACGGTCAGGATGCGGCCCACCTACGTCTGCGGGCT < 41bp 0.771883446681617 0.432934753012617 NA NA prediction 0.543766893363233 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71008450 chr10:71008449 nonsynonymous SNV 0.948 5 20 hm7G_associated_SNPs_8136 0 0 0 0 1 HKDC1 chr10:71008484 5'GT 71008484 Upstream 36bp 7838 chr12 124239052 124239052 1 + T G CESC 124239053 + 124239033 124239073 41 TCCAACACCGCCTCCTACCTGAGGCTCTGGGCGCTTAGCCT TCCAACACCGCCTCCTACCGGAGGCTCTGGGCGCTTAGCCT < 41bp 0.771837239981029 0.444503970703954 NA NA prediction 0.543674479962058 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239053 chr12:124239052 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8137 0 0 1 0 2 ATP6V0A2 chr12:124238967 3'AG 124238967 Downstream 86bp 7839 chr12 124239052 124239052 1 + T G CESC 124239053 + 124239033 124239073 41 TCCAACACCGCCTCCTACCTGAGGCTCTGGGCGCTTAGCCT TCCAACACCGCCTCCTACCGGAGGCTCTGGGCGCTTAGCCT < 41bp 0.771837239981029 0.444503970703954 NA NA prediction 0.543674479962058 Functional Loss - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239053 chr12:124239052 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8137 0 0 1 0 2 ATP6V0A2 chr12:124239084 5'GT 124239084 Upstream 33bp 7840 chr8 94798500 94798500 1 + T G STAD 94798501 + 94798481 94798521 41 GGCGCATTTTCTTAGTGGATGCAGTAAGTGGACGAGAAAAT GGCGCATTTTCTTAGTGGAGGCAGTAAGTGGACGAGAAAAT < 41bp 0.840578437384617 0.568789155414372 NA NA prediction 0.54357856394049 Functional Loss - TMEM67 ENSG00000164953 CDS Human protein_coding chr8:94798501 chr8:94798500 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8138 0 0 1 0 2 TMEM67 chr8:94798451 3'AG 94798451 Downstream 50bp 7841 chr8 94798500 94798500 1 + T G STAD 94798501 + 94798481 94798521 41 GGCGCATTTTCTTAGTGGATGCAGTAAGTGGACGAGAAAAT GGCGCATTTTCTTAGTGGAGGCAGTAAGTGGACGAGAAAAT < 41bp 0.840578437384617 0.568789155414372 NA NA prediction 0.54357856394049 Functional Loss - TMEM67 ENSG00000164953 CDS Human protein_coding chr8:94798501 chr8:94798500 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8138 0 0 1 0 2 TMEM67 chr8:94798574 5'GT 94798574 Upstream 75bp 7842 chr5 64875362 64875362 1 + T G LAML 64875363 + 64875343 64875383 41 CTATAGAAATGAAAGCTTCTGAAAATCCTGTTCTTCAGAAT CTATAGAAATGAAAGCTTCGGAAAATCCTGTTCTTCAGAAT < 41bp 0.839919492434554 0.568204142910833 NA NA prediction 0.543430699047442 Functional Loss - PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64875363 chr5:64875362 synonymous SNV . 0 20 hm7G_associated_SNPs_8140 0 0 1 0 1 PPWD1 chr5:64875440 5'GT 64875440 Upstream 79bp 7843 chr19 53990010 53990010 1 + T G SKCM 53990011 + 53989991 53990031 41 TATAGGAACCTGGTCTCCCTGGGTGAGGATAACTTCCCTCC TATAGGAACCTGGTCTCCCGGGGTGAGGATAACTTCCCTCC < 41bp 0.84454383164159 0.572844204279512 NA NA prediction 0.543399254724155 Functional Loss - ZNF813 ENSG00000198346 CDS Human protein_coding chr19:53990011 chr19:53990010 nonsynonymous SNV 0.420 3 20 hm7G_associated_SNPs_8141 0 0 0 0 1 ZNF813 chr19:53990012 5'GT 53990012 Upstream 3bp 7844 chr7 20441377 20441377 1 + T G SKCM 20441378 + 20441358 20441398 41 AACAGTTACAATGAAAAAATGTGATGTCACAGGAGGAAAAA AACAGTTACAATGAAAAAAGGTGATGTCACAGGAGGAAAAA < 41bp 0.771647516227075 0.476551698248424 NA NA prediction 0.54329503245415 Functional Loss - ITGB8 ENSG00000105855 CDS Human protein_coding chr7:20441378 chr7:20441377 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_8142 0 0 0 0 1 ITGB8 chr7:20441344 3'AG 20441344 Downstream 34bp 7845 chr7 66774599 66774599 1 + T G KIRP 66774600 + 66774580 66774620 41 GTTGCCCTCCAACTGAGTCTGCACGAAGATATCAATCAGCG GTTGCCCTCCAACTGAGTCGGCACGAAGATATCAATCAGCG < 41bp 0.821157066004776 0.54954208488052 NA NA prediction 0.543229962248513 Functional Loss - STAG3L4 ENSG00000106610 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:66774600 chr7:66774599 . . 0 20 hm7G_associated_SNPs_8143 0 0 0 0 1 STAG3L4 chr7:66774551 3'AG 66774551 Downstream 49bp 7846 chr2 17955562 17955562 1 + T G UCEC 17955563 + 17955543 17955583 41 TACTCTTGAAAAAATGGAGTGGCCCAATCACTATGCATGTG TACTCTTGAAAAAATGGAGGGGCCCAATCACTATGCATGTG < 41bp 0.832870494662542 0.561301449757293 NA NA prediction 0.543138089810497 Functional Loss - GEN1 ENSG00000178295 CDS Human protein_coding chr2:17955563 chr2:17955562 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8144 0 0 1 0 1 GEN1 chr2:17955538 3'AG 17955538 Downstream 25bp 7847 chr3 49727010 49727010 1 + T G rs538929696 49727011 + 49726991 49727031 41 AGAGGTTGGGCGGATGTTGTGAGCCGGGTCGCTGCGGCCGA AGAGGTTGGGCGGATGTTGGGAGCCGGGTCGCTGCGGCCGA < 41bp 0.771565906913792 0.494476646673256 NA NA prediction 0.543131813827583 Functional Loss - RNF123 ENSG00000164068 UTR5 Human protein_coding chr3:49727011 chr3:49727010 . . 0 20 hm7G_associated_SNPs_8145 0 0 1 0 1 RNF123 chr3:49727039 5'GT 49727039 Upstream 30bp 7848 chrX 51643373 51643373 1 + T G HNSC 51643374 + 51643354 51643394 41 GAGACTAGCAAGATGAAAGTGCTGAGATTCATTGCAGAGGT GAGACTAGCAAGATGAAAGGGCTGAGATTCATTGCAGAGGT < 41bp 0.854210204628893 0.582684247693253 NA NA prediction 0.543051913871279 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51643374 chrX:51643373 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8147 0 0 1 0 2 MAGED1 chrX:51643278 3'AG 51643278 Downstream 96bp 7849 chrX 51643373 51643373 1 + T G HNSC 51643374 + 51643354 51643394 41 GAGACTAGCAAGATGAAAGTGCTGAGATTCATTGCAGAGGT GAGACTAGCAAGATGAAAGGGCTGAGATTCATTGCAGAGGT < 41bp 0.854210204628893 0.582684247693253 NA NA prediction 0.543051913871279 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51643374 chrX:51643373 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8147 0 0 1 0 2 MAGED1 chrX:51643392 5'GT 51643392 Upstream 20bp 7850 chr17 19470423 19470423 1 + T G GBM 19470424 + 19470404 19470444 41 TGCAGTGCACGAGTGGTGGTGTTCTGAGGGGGAGTGGAAAT TGCAGTGCACGAGTGGTGGGGTTCTGAGGGGGAGTGGAAAT < 41bp 0.836749053587263 0.565239272652733 NA NA prediction 0.54301956186906 Functional Loss - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19470424 chr17:19470423 synonymous SNV . 0 20 hm7G_associated_SNPs_8150 0 0 0 0 1 SLC47A1 chr17:19470409 3'AG 19470409 Downstream 15bp 7851 chr14 56130731 56130731 1 + T G STAD 56130732 + 56130712 56130752 41 GCATCAACTGAAAAAATGCTGCAGGACAAAGTGAACAAGAC GCATCAACTGAAAAAATGCGGCAGGACAAAGTGAACAAGAC < 41bp 0.771504270373816 0.487525658751289 NA NA prediction 0.543008540747633 Functional Loss - KTN1 ENSG00000126777 CDS Human protein_coding chr14:56130732 chr14:56130731 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8151 0 0 1 0 2 KTN1 chr14:56130673 3'AG 56130673 Downstream 59bp 7852 chr14 56130731 56130731 1 + T G STAD 56130732 + 56130712 56130752 41 GCATCAACTGAAAAAATGCTGCAGGACAAAGTGAACAAGAC GCATCAACTGAAAAAATGCGGCAGGACAAAGTGAACAAGAC < 41bp 0.771504270373816 0.487525658751289 NA NA prediction 0.543008540747633 Functional Loss - KTN1 ENSG00000126777 CDS Human protein_coding chr14:56130732 chr14:56130731 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8151 0 0 1 0 2 KTN1 chr14:56130759 5'GT 56130759 Upstream 29bp 7853 chr19 22779137 22779137 1 + T G UCEC 22779138 + 22779118 22779158 41 GTGGTAACTGGGATAGAGCTGATGTGGCCCCAACCCCACCT GTGGTAACTGGGATAGAGCGGATGTGGCCCCAACCCCACCT < 41bp 0.809566912133667 0.538066086979513 NA NA prediction 0.54300165030831 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22779138 chr19:22779137 . . 0 20 hm7G_associated_SNPs_8152 0 0 0 0 1 GOLGA2P9 chr19:22779221 5'GT 22779221 Upstream 85bp 7854 chr5 80057454 80057454 1 + T G SKCM 80057455 + 80057435 80057475 41 GAAAATCATCTACGTAAATTGCCCGACATAGAGAGGGGACT GAAAATCATCTACGTAAATGGCCCGACATAGAGAGGGGACT < 41bp 0.771480033834248 0.451532868995808 NA NA prediction 0.542960067668496 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:80057455 chr5:80057454 nonsynonymous SNV 0.149 5 20 hm7G_associated_SNPs_8153 0 0 0 0 2 MSH3 chr5:80057365 3'AG 80057365 Downstream 90bp 7855 chr5 80057454 80057454 1 + T G SKCM 80057455 + 80057435 80057475 41 GAAAATCATCTACGTAAATTGCCCGACATAGAGAGGGGACT GAAAATCATCTACGTAAATGGCCCGACATAGAGAGGGGACT < 41bp 0.771480033834248 0.451532868995808 NA NA prediction 0.542960067668496 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:80057455 chr5:80057454 nonsynonymous SNV 0.149 5 20 hm7G_associated_SNPs_8153 0 0 0 0 2 MSH3 chr5:80057497 5'GT 80057497 Upstream 44bp 7856 chr17 76411024 76411024 1 + T G GBM 76411025 + 76411005 76411045 41 TGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGG TGATTGGCTCTCCTAATTTGGGGTACAGGTCAGTTCACCGG < 41bp 0.863409685594181 0.591936534798529 NA NA prediction 0.542946301591304 Functional Loss - PGS1 ENSG00000087157 CDS Human protein_coding chr17:76411025 chr17:76411024 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8154 0 0 1 1 2 PGS1 chr17:76410960 3'AG 76410960 Downstream 65bp 7857 chr17 76411024 76411024 1 + T G GBM 76411025 + 76411005 76411045 41 TGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGG TGATTGGCTCTCCTAATTTGGGGTACAGGTCAGTTCACCGG < 41bp 0.863409685594181 0.591936534798529 NA NA prediction 0.542946301591304 Functional Loss - PGS1 ENSG00000087157 CDS Human protein_coding chr17:76411025 chr17:76411024 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8154 0 0 1 1 2 PGS1 chr17:76411108 5'GT 76411108 Upstream 85bp 7858 chr15 45007896 45007896 1 + T G DLBC 45007897 + 45007877 45007917 41 ACAGCCCAAGATAGTTAAGTGGGGTAAGTCTTACATTCTTT ACAGCCCAAGATAGTTAAGGGGGGTAAGTCTTACATTCTTT < 41bp 0.771298497893703 0.473189845156468 NA NA prediction 0.542596995787406 Functional Loss - B2M ENSG00000166710 CDS Human protein_coding chr15:45007897 chr15:45007896 nonsynonymous SNV 0.774 4 20 hm7G_associated_SNPs_8156 0 0 1 0 2 B2M chr15:45007840 3'AG 45007840 Downstream 57bp 7859 chr15 45007896 45007896 1 + T G DLBC 45007897 + 45007877 45007917 41 ACAGCCCAAGATAGTTAAGTGGGGTAAGTCTTACATTCTTT ACAGCCCAAGATAGTTAAGGGGGGTAAGTCTTACATTCTTT < 41bp 0.771298497893703 0.473189845156468 NA NA prediction 0.542596995787406 Functional Loss - B2M ENSG00000166710 CDS Human protein_coding chr15:45007897 chr15:45007896 nonsynonymous SNV 0.774 4 20 hm7G_associated_SNPs_8156 0 0 1 0 2 B2M chr15:45007899 5'GT 45007899 Upstream 4bp 7860 chr10 13237244 13237244 1 + T G BRCA 13237245 + 13237225 13237265 41 CCACCACCAAGACCAAAACTGAGTGCTTTAGCAGAAGCCAA CCACCACCAAGACCAAAACGGAGTGCTTTAGCAGAAGCCAA < 41bp 0.771286351749608 0.45185055949769 NA NA prediction 0.542572703499216 Functional Loss - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13237245 chr10:13237244 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8157 0 0 1 0 1 MCM10 chr10:13237269 5'GT 13237269 Upstream 26bp 7861 chrX 153171805 153171805 1 + T G LUAD 153171806 + 153171786 153171826 41 ATTGTGGTCGTCTATGTGCTGTGCTGGGCACCCTTCTTCCT ATTGTGGTCGTCTATGTGCGGTGCTGGGCACCCTTCTTCCT < 41bp 0.771256100793404 0.468771895889757 NA NA prediction 0.542512201586808 Functional Loss - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153171806 chrX:153171805 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_8158 0 0 0 0 1 AVPR2 chrX:153171870 5'GT 153171870 Upstream 66bp 7862 chr3 183907209 183907209 1 + T G COAD 183907210 + 183907190 183907230 41 CTGGATGTCAGGGCCATCCTGTGGCTGGAGAATTACCTGCA CTGGATGTCAGGGCCATCCGGTGGCTGGAGAATTACCTGCA < 41bp 0.854657924524334 0.583409099180009 NA NA prediction 0.54249765068865 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183907210 chr3:183907209 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8159 0 0 1 0 2 ABCF3 chr3:183907176 3'AG 183907176 Downstream 34bp 7863 chr3 183907209 183907209 1 + T G COAD 183907210 + 183907190 183907230 41 CTGGATGTCAGGGCCATCCTGTGGCTGGAGAATTACCTGCA CTGGATGTCAGGGCCATCCGGTGGCTGGAGAATTACCTGCA < 41bp 0.854657924524334 0.583409099180009 NA NA prediction 0.54249765068865 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183907210 chr3:183907209 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8159 0 0 1 0 2 ABCF3 chr3:183907231 5'GT 183907231 Upstream 23bp 7864 chr16 84806233 84806233 1 + T G UCEC 84806234 + 84806214 84806254 41 TCGTTTATGAGAAGACTGGTGGGTGCCAGAAGCTTATCAAA TCGTTTATGAGAAGACTGGGGGGTGCCAGAAGCTTATCAAA < 41bp 0.860365747917746 0.58915398932743 NA NA prediction 0.542423517180632 Functional Loss - USP10 ENSG00000103194 CDS Human protein_coding chr16:84806234 chr16:84806233 synonymous SNV . 0 20 hm7G_associated_SNPs_8160 0 0 1 0 2 USP10 chr16:84806147 3'AG 84806147 Downstream 87bp 7865 chr16 84806233 84806233 1 + T G UCEC 84806234 + 84806214 84806254 41 TCGTTTATGAGAAGACTGGTGGGTGCCAGAAGCTTATCAAA TCGTTTATGAGAAGACTGGGGGGTGCCAGAAGCTTATCAAA < 41bp 0.860365747917746 0.58915398932743 NA NA prediction 0.542423517180632 Functional Loss - USP10 ENSG00000103194 CDS Human protein_coding chr16:84806234 chr16:84806233 synonymous SNV . 0 20 hm7G_associated_SNPs_8160 0 0 1 0 2 USP10 chr16:84806291 5'GT 84806291 Upstream 59bp 7866 chr7 142836666 142836666 1 + T G HNSC 142836667 + 142836647 142836687 41 GGGAATTAGGCATCTGCCCTGATGATGCTGCTGTAATCCCC GGGAATTAGGCATCTGCCCGGATGATGCTGCTGTAATCCCC < 41bp 0.824739288427213 0.553551381889433 NA NA prediction 0.542375813075559 Functional Loss - PIP ENSG00000159763 CDS Human protein_coding chr7:142836667 chr7:142836666 synonymous SNV . 0 20 hm7G_associated_SNPs_8162 0 0 0 0 1 PIP chr7:142836611 3'AG 142836611 Downstream 56bp 7867 chr12 40740652 40740652 1 + T G STAD 40740653 + 40740633 40740673 41 TCTATGACATTTTGACAACTGGAGGTAGAATAGTAGAGGGT TCTATGACATTTTGACAACGGGAGGTAGAATAGTAGAGGGT < 41bp 0.77115813889666 0.478672575186455 NA NA prediction 0.54231627779332 Functional Loss - LRRK2 ENSG00000188906 CDS Human protein_coding chr12:40740653 chr12:40740652 synonymous SNV . 0 20 hm7G_associated_SNPs_8163 0 0 0 0 1 LRRK2 chr12:40740725 5'GT 40740725 Upstream 74bp 7868 chr1 17727748 17727748 1 + T G CESC 17727749 + 17727729 17727769 41 TGGGGATCCCCAAGCCTTTTGGGCCCCAAATCAAGGGGACC TGGGGATCCCCAAGCCTTTGGGGCCCCAAATCAAGGGGACC < 41bp 0.810882706129177 0.539840099604179 NA NA prediction 0.542085213049996 Functional Loss - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17727749 chr1:17727748 . 0.960 2 20 hm7G_associated_SNPs_8166 0 0 0 0 1 PADI6 chr1:17727701 3'AG 17727701 Downstream 48bp 7869 chr5 156810297 156810297 1 + T G KIRC 156810298 + 156810278 156810318 41 GAGCGCCTGGAGGTCCGGATGAAACGTCTGGAAGCCAAGTA GAGCGCCTGGAGGTCCGGAGGAAACGTCTGGAAGCCAAGTA < 41bp 0.771028734841546 0.440926078580846 NA NA prediction 0.542057469683091 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156810298 chr5:156810297 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_8167 0 0 1 0 2 CYFIP2 chr5:156810273 3'AG 156810273 Downstream 25bp 7870 chr5 156810297 156810297 1 + T G KIRC 156810298 + 156810278 156810318 41 GAGCGCCTGGAGGTCCGGATGAAACGTCTGGAAGCCAAGTA GAGCGCCTGGAGGTCCGGAGGAAACGTCTGGAAGCCAAGTA < 41bp 0.771028734841546 0.440926078580846 NA NA prediction 0.542057469683091 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156810298 chr5:156810297 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_8167 0 0 1 0 2 CYFIP2 chr5:156810367 5'GT 156810367 Upstream 71bp 7871 chr1 41453080 41453080 1 + T G LUSC 41453081 + 41453061 41453101 41 GATGCAATCCAGGAGTGGGTGATGAGACAGGCGTTAATACC GATGCAATCCAGGAGTGGGGGATGAGACAGGCGTTAATACC < 41bp 0.847043906019867 0.576033960218337 NA NA prediction 0.542019891603059 Functional Loss - CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41453081 chr1:41453080 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_8168 0 0 1 0 2 CTPS1 chr1:41453044 3'AG 41453044 Downstream 37bp 7872 chr1 41453080 41453080 1 + T G LUSC 41453081 + 41453061 41453101 41 GATGCAATCCAGGAGTGGGTGATGAGACAGGCGTTAATACC GATGCAATCCAGGAGTGGGGGATGAGACAGGCGTTAATACC < 41bp 0.847043906019867 0.576033960218337 NA NA prediction 0.542019891603059 Functional Loss - CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41453081 chr1:41453080 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_8168 0 0 1 0 2 CTPS1 chr1:41453144 5'GT 41453144 Upstream 65bp 7873 chrX 48372918 48372918 1 + T G TGCT 48372919 + 48372899 48372939 41 TCTTCTGCCCCCAGGGACCTGACGGTGTCCAAGCCACTGAA TCTTCTGCCCCCAGGGACCGGACGGTGTCCAAGCCACTGAA < 41bp 0.861180923106726 0.590203871900114 NA NA prediction 0.541954102413224 Functional Loss - PORCN ENSG00000102312 CDS Human protein_coding chrX:48372919 chrX:48372918 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_8169 0 0 1 0 2 PORCN chrX:48372913 3'AG 48372913 Downstream 6bp 7874 chrX 48372918 48372918 1 + T G TGCT 48372919 + 48372899 48372939 41 TCTTCTGCCCCCAGGGACCTGACGGTGTCCAAGCCACTGAA TCTTCTGCCCCCAGGGACCGGACGGTGTCCAAGCCACTGAA < 41bp 0.861180923106726 0.590203871900114 NA NA prediction 0.541954102413224 Functional Loss - PORCN ENSG00000102312 CDS Human protein_coding chrX:48372919 chrX:48372918 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_8169 0 0 1 0 2 PORCN chrX:48373013 5'GT 48373013 Upstream 96bp 7875 chr19 45448447 45448447 1 + T G COAD 45448448 + 45448428 45448468 41 ACCTACTATGACGACCACCTGAGGGACCTGGGTCCGCTCAC ACCTACTATGACGACCACCGGAGGGACCTGGGTCCGCTCAC < 41bp 0.770935613334187 0.450234706717154 NA NA prediction 0.541871226668374 Functional Loss - APOC4 ENSG00000224916;ENSG00000267467 CDS Human other chr19:45448448 chr19:45448447 nonsynonymous SNV 0.948 2 20 hm7G_associated_SNPs_8171 0 0 0 0 1 APOC4 chr19:45448397 3'AG 45448397 Downstream 51bp 7876 chr1 54426057 54426057 1 + T G UCEC 54426058 + 54426038 54426078 41 GCTCCACCTGAAGGATAATTGTTTATCTGATGCTGGGGTGC GCTCCACCTGAAGGATAATGGTTTATCTGATGCTGGGGTGC < 41bp 0.853534444842562 0.582619903735448 NA NA prediction 0.541829082214228 Functional Loss - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54426058 chr1:54426057 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8172 0 0 1 0 1 LRRC42 chr1:54426147 5'GT 54426147 Upstream 91bp 7877 chr19 22256295 22256295 1 + T G LUSC 22256296 + 22256276 22256316 41 GCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGG GCTGTCTCTAAGCCAGACCGGATCACCTGTCTGGAGCAAGG < 41bp 0.770904598811243 0.464625338741877 NA NA prediction 0.541809197622487 Functional Loss - ZNF257 ENSG00000197134 CDS Human protein_coding chr19:22256296 chr19:22256295 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_8173 0 0 0 0 2 ZNF257 chr19:22256271 3'AG 22256271 Downstream 25bp 7878 chr19 22256295 22256295 1 + T G LUSC 22256296 + 22256276 22256316 41 GCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGG GCTGTCTCTAAGCCAGACCGGATCACCTGTCTGGAGCAAGG < 41bp 0.770904598811243 0.464625338741877 NA NA prediction 0.541809197622487 Functional Loss - ZNF257 ENSG00000197134 CDS Human protein_coding chr19:22256296 chr19:22256295 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_8173 0 0 0 0 2 ZNF257 chr19:22256366 5'GT 22256366 Upstream 72bp 7879 chr5 180338579 180338579 1 + T G BLCA 180338580 + 180338560 180338600 41 TCCATGCGGCATGCTCATCTGAGCCGAGAGGTGGAATCCAG TCCATGCGGCATGCTCATCGGAGCCGAGAGGTGGAATCCAG < 41bp 0.847284227263881 0.576424857003273 NA NA prediction 0.541718740521215 Functional Loss - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180338580 chr5:180338579 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_8174 0 0 0 0 1 BTNL8 chr5:180338614 5'GT 180338614 Upstream 36bp 7880 chr3 5249779 5249779 1 + T G OV 5249780 + 5249760 5249800 41 CCTGTGTCCTCTCCTTAGGTGCTGATAGGAGATGTGGAAGA CCTGTGTCCTCTCCTTAGGGGCTGATAGGAGATGTGGAAGA < 41bp 0.850765172982484 0.580034028858948 NA NA prediction 0.541462288247073 Functional Loss - EDEM1 ENSG00000134109 CDS Human protein_coding chr3:5249780 chr3:5249779 nonsynonymous SNV 0.914 4 20 hm7G_associated_SNPs_8178 0 0 1 0 1 EDEM1 chr3:5249778 3'AG 5249778 Downstream 2bp 7881 chr16 697444 697444 1 + T G PAAD 697445 + 697425 697465 41 CAAGGCTTGTGTTCAATCGTGTGAATGGCCGGCGGGCCCCC CAAGGCTTGTGTTCAATCGGGTGAATGGCCGGCGGGCCCCC < 41bp 0.857336513400432 0.58664087455267 NA NA prediction 0.541391277695526 Functional Loss - MCRIP2 ENSG00000172366 CDS Human protein_coding chr16:697445 chr16:697444 synonymous SNV . 0 20 hm7G_associated_SNPs_8179 0 0 1 0 1 MCRIP2 chr16:697417 3'AG 697417 Downstream 28bp 7882 chr10 74928099 74928099 1 + T G rs569932117 74928100 + 74928080 74928120 41 AGGAGGAGGAGGAGGAGGATGATCTCCAGATACACTCGGAA AGGAGGAGGAGGAGGAGGAGGATCTCCAGATACACTCGGAA < 41bp 0.770682647849807 0.458469067162231 NA NA prediction 0.541365295699615 Functional Loss - FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74928100 chr10:74928099 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8180 0 0 1 0 1 FAM149B1 chr10:74928144 5'GT 74928144 Upstream 46bp 7883 chrX 106084102 106084102 1 + T G UCEC 106084103 + 106084083 106084123 41 CATACAGGAATCCCAAAATTGGATACTGCCAGGTATGACTT CATACAGGAATCCCAAAATGGGATACTGCCAGGTATGACTT < 41bp 0.770661133804518 0.450197789744397 NA NA prediction 0.541322267609036 Functional Loss - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106084103 chrX:106084102 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8181 0 0 1 0 1 TBC1D8B chrX:106084114 5'GT 106084114 Upstream 13bp 7884 chr8 86127171 86127171 1 - A C BLCA 86127170 - 86127150 86127190 41 TCGCAAAAAGCATTTCACTTGAACCTCTGCAGAAAGAACTG TCGCAAAAAGCATTTCACTGGAACCTCTGCAGAAAGAACTG < 41bp 0.826822718315414 0.556232586752237 NA NA prediction 0.541180263126354 Functional Loss - C8orf59 ENSG00000176731 CDS Human protein_coding chr8:86127170 chr8:86127171 synonymous SNV . 0 20 hm7G_associated_SNPs_8182 0 0 1 0 2 C8orf59 chr8:86127150 5'GT 86127150 Upstream 22bp 7885 chr8 86127171 86127171 1 - A C BLCA 86127170 - 86127150 86127190 41 TCGCAAAAAGCATTTCACTTGAACCTCTGCAGAAAGAACTG TCGCAAAAAGCATTTCACTGGAACCTCTGCAGAAAGAACTG < 41bp 0.826822718315414 0.556232586752237 NA NA prediction 0.541180263126354 Functional Loss - C8orf59 ENSG00000176731 CDS Human protein_coding chr8:86127170 chr8:86127171 synonymous SNV . 0 20 hm7G_associated_SNPs_8182 0 0 1 0 2 C8orf59 chr8:86127266 3'AG 86127266 Downstream 96bp 7886 chr1 70687388 70687388 1 + T G rs575652474 70687389 + 70687369 70687409 41 GCGGGCCCGGTGGCGGAGGTGGTGGTGGCGGCGGAGGCGGC GCGGGCCCGGTGGCGGAGGGGGTGGTGGCGGCGGAGGCGGC < 41bp 0.815526455162435 0.545036204368849 NA NA prediction 0.540980501587173 Functional Loss - SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687389 chr1:70687388 synonymous SNV . 0 20 hm7G_associated_SNPs_8187 0 0 1 0 2 SRSF11 chr1:70687295 3'AG 70687295 Downstream 94bp 7887 chr1 70687388 70687388 1 + T G rs575652474 70687389 + 70687369 70687409 41 GCGGGCCCGGTGGCGGAGGTGGTGGTGGCGGCGGAGGCGGC GCGGGCCCGGTGGCGGAGGGGGTGGTGGCGGCGGAGGCGGC < 41bp 0.815526455162435 0.545036204368849 NA NA prediction 0.540980501587173 Functional Loss - SRSF11 ENSG00000116754 CDS Human protein_coding chr1:70687389 chr1:70687388 synonymous SNV . 0 20 hm7G_associated_SNPs_8187 0 0 1 0 2 SRSF11 chr1:70687298 3'AG 70687298 Downstream 91bp 7888 chr17 35825613 35825613 1 + T G BRCA 35825614 + 35825594 35825634 41 GCAAGAATTGTGGGGCCAGTGGAACATGACAAATTCATTGA GCAAGAATTGTGGGGCCAGGGGAACATGACAAATTCATTGA < 41bp 0.864800345709458 0.594350488510663 NA NA prediction 0.54089971439759 Functional Loss - TADA2A ENSG00000108264 CDS Human other chr17:35825614 chr17:35825613 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_8188 0 0 1 0 2 TADA2A chr17:35825535 3'AG 35825535 Downstream 79bp 7889 chr17 35825613 35825613 1 + T G BRCA 35825614 + 35825594 35825634 41 GCAAGAATTGTGGGGCCAGTGGAACATGACAAATTCATTGA GCAAGAATTGTGGGGCCAGGGGAACATGACAAATTCATTGA < 41bp 0.864800345709458 0.594350488510663 NA NA prediction 0.54089971439759 Functional Loss - TADA2A ENSG00000108264 CDS Human other chr17:35825614 chr17:35825613 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_8188 0 0 1 0 2 TADA2A chr17:35825645 5'GT 35825645 Upstream 33bp 7890 chr3 142496483 142496483 1 + T G UCEC 142496484 + 142496464 142496504 41 TTTATCACAGGTTTCGTCTTGATATATATCGATGTTTGGCC TTTATCACAGGTTTCGTCTGGATATATATCGATGTTTGGCC < 41bp 0.770368623905182 0.465022573658675 NA NA prediction 0.540737247810365 Functional Loss - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142496484 chr3:142496483 synonymous SNV . 0 20 hm7G_associated_SNPs_8189 0 0 0 0 1 TRPC1 chr3:142496474 3'AG 142496474 Downstream 10bp 7891 chr12 8612215 8612215 1 + T G LGG 8612216 + 8612196 8612236 41 CTTACCATTTTACATATGGTGAAACTGGCAAAAGGCTGTCT CTTACCATTTTACATATGGGGAAACTGGCAAAAGGCTGTCT < 41bp 0.770337731806974 0.475856402257849 NA NA prediction 0.540675463613948 Functional Loss - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8612216 chr12:8612215 synonymous SNV . 0 20 hm7G_associated_SNPs_8193 0 0 0 0 2 CLEC6A chr12:8612193 3'AG 8612193 Downstream 23bp 7892 chr12 8612215 8612215 1 + T G LGG 8612216 + 8612196 8612236 41 CTTACCATTTTACATATGGTGAAACTGGCAAAAGGCTGTCT CTTACCATTTTACATATGGGGAAACTGGCAAAAGGCTGTCT < 41bp 0.770337731806974 0.475856402257849 NA NA prediction 0.540675463613948 Functional Loss - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8612216 chr12:8612215 synonymous SNV . 0 20 hm7G_associated_SNPs_8193 0 0 0 0 2 CLEC6A chr12:8612294 5'GT 8612294 Upstream 80bp 7893 chr3 63968674 63968674 1 + T G SKCM 63968675 + 63968655 63968695 41 TCTCGACACCAAGAAGCCCTGCACCCGGTCTTTGACATGCA TCTCGACACCAAGAAGCCCGGCACCCGGTCTTTGACATGCA < 41bp 0.863603153243254 0.593361988274979 NA NA prediction 0.54048232993655 Functional Loss - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63968675 chr3:63968674 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8195 0 0 1 0 2 ATXN7 chr3:63968615 3'AG 63968615 Downstream 60bp 7894 chr3 63968674 63968674 1 + T G SKCM 63968675 + 63968655 63968695 41 TCTCGACACCAAGAAGCCCTGCACCCGGTCTTTGACATGCA TCTCGACACCAAGAAGCCCGGCACCCGGTCTTTGACATGCA < 41bp 0.863603153243254 0.593361988274979 NA NA prediction 0.54048232993655 Functional Loss - ATXN7 ENSG00000163635 CDS Human protein_coding chr3:63968675 chr3:63968674 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8195 0 0 1 0 2 ATXN7 chr3:63968697 5'GT 63968697 Upstream 24bp 7895 chr12 13221342 13221342 1 + T G UCEC 13221343 + 13221323 13221363 41 CTGCTTCGGGGGCAAAATCTGACACCTTACTGGGCATTGAG CTGCTTCGGGGGCAAAATCGGACACCTTACTGGGCATTGAG < 41bp 0.770190445917961 0.44222190523532 NA NA prediction 0.540380891835923 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13221343 chr12:13221342 nonsynonymous SNV 0.812 3 20 hm7G_associated_SNPs_8196 0 0 0 1 1 FAM234B chr12:13221381 5'GT 13221381 Upstream 40bp 7896 chr20 3195954 3195954 1 + T G rs145329644 3195955 + 3195935 3195975 41 TTCTGGAGAAGTTAAAGCCTGAAGGTATTATCTGCTTTGTT TTCTGGAGAAGTTAAAGCCGGAAGGTATTATCTGCTTTGTT < 41bp 0.838808065052935 0.568632438483603 NA NA prediction 0.540351253138665 Functional Loss - ITPA ENSG00000125877 CDS Human protein_coding chr20:3195955 chr20:3195954 synonymous SNV . 0 20 hm7G_associated_SNPs_8198 0 0 1 1 2 ITPA chr20:3195927 3'AG 3195927 Downstream 28bp 7897 chr20 3195954 3195954 1 + T G rs145329644 3195955 + 3195935 3195975 41 TTCTGGAGAAGTTAAAGCCTGAAGGTATTATCTGCTTTGTT TTCTGGAGAAGTTAAAGCCGGAAGGTATTATCTGCTTTGTT < 41bp 0.838808065052935 0.568632438483603 NA NA prediction 0.540351253138665 Functional Loss - ITPA ENSG00000125877 CDS Human protein_coding chr20:3195955 chr20:3195954 synonymous SNV . 0 20 hm7G_associated_SNPs_8198 0 0 1 1 2 ITPA chr20:3195958 5'GT 3195958 Upstream 5bp 7898 chr5 137681226 137681226 1 + T G OV 137681227 + 137681207 137681247 41 ATCTGGATGCCCGCAAAACTGGGGTCAAGCGGCGCCACGAG ATCTGGATGCCCGCAAAACGGGGGTCAAGCGGCGCCACGAG < 41bp 0.859706255083053 0.58953792957276 NA NA prediction 0.540336651020586 Functional Loss - FAM53C ENSG00000120709 CDS Human protein_coding chr5:137681227 chr5:137681226 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_8199 0 0 1 0 1 FAM53C chr5:137681298 5'GT 137681298 Upstream 73bp 7899 chr9 74840616 74840616 1 + T G COAD 74840617 + 74840597 74840637 41 ATATAAGTGAAAATCGTGATGAAGTTGAAGCTGTGAAAAAC ATATAAGTGAAAATCGTGAGGAAGTTGAAGCTGTGAAAAAC < 41bp 0.82960351981045 0.559500357687053 NA NA prediction 0.540206324246793 Functional Loss - GDA ENSG00000119125 CDS Human protein_coding chr9:74840617 chr9:74840616 nonsynonymous SNV 0.943 1 20 hm7G_associated_SNPs_8200 0 0 1 2 2 GDA chr9:74840593 3'AG 74840593 Downstream 24bp 7900 chr9 74840616 74840616 1 + T G COAD 74840617 + 74840597 74840637 41 ATATAAGTGAAAATCGTGATGAAGTTGAAGCTGTGAAAAAC ATATAAGTGAAAATCGTGAGGAAGTTGAAGCTGTGAAAAAC < 41bp 0.82960351981045 0.559500357687053 NA NA prediction 0.540206324246793 Functional Loss - GDA ENSG00000119125 CDS Human protein_coding chr9:74840617 chr9:74840616 nonsynonymous SNV 0.943 1 20 hm7G_associated_SNPs_8200 0 0 1 2 2 GDA chr9:74840700 5'GT 74840700 Upstream 85bp 7901 chr9 71080033 71080033 1 + T G rs561675189 71080034 + 71080014 71080054 41 CCAAATCAATGAAGGTCCCTGTATATGAGACCCCAGCTGGA CCAAATCAATGAAGGTCCCGGTATATGAGACCCCAGCTGGA < 41bp 0.838396842771514 0.568307619933504 NA NA prediction 0.540178445676019 Functional Loss - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71080034 chr9:71080033 synonymous SNV . 0 20 hm7G_associated_SNPs_8202 0 0 0 0 1 PGM5 chr9:71080124 5'GT 71080124 Upstream 92bp 7902 chr15 51687173 51687173 1 + T G UCEC 51687174 + 51687154 51687194 41 GTGTCCAACGACGTGCTCCTGGCAGGTAAGAGGGGTACGCT GTGTCCAACGACGTGCTCCGGGCAGGTAAGAGGGGTACGCT < 41bp 0.85518551491854 0.585096716149916 NA NA prediction 0.540177597537248 Functional Loss - GLDN ENSG00000186417 CDS Human protein_coding chr15:51687174 chr15:51687173 nonsynonymous SNV 0.658 1 20 hm7G_associated_SNPs_8203 0 0 0 0 1 GLDN chr15:51687178 5'GT 51687178 Upstream 6bp 7903 chr3 148563395 148563395 1 + T G OV 148563396 + 148563376 148563416 41 CATATGCTTACAAACTCGGTGAGAACAATGCTGAGTTGGTA CATATGCTTACAAACTCGGGGAGAACAATGCTGAGTTGGTA < 41bp 0.770005170124817 0.472236952579715 NA NA prediction 0.540010340249635 Functional Loss - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148563396 chr3:148563395 synonymous SNV . 0 20 hm7G_associated_SNPs_8205 0 0 0 0 1 CPB1 chr3:148563413 5'GT 148563413 Upstream 19bp 7904 chr5 112889315 112889315 1 + T G ESCA 112889316 + 112889296 112889336 41 TAATTTTTCTGCCTGGATATGACGAAATTGTTGGACTGAGA TAATTTTTCTGCCTGGATAGGACGAAATTGTTGGACTGAGA < 41bp 0.840661733383405 0.570679590594851 NA NA prediction 0.539964285577108 Functional Loss - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112889316 chr5:112889315 stopgain 1.000 1 20 hm7G_associated_SNPs_8206 0 0 1 0 2 YTHDC2 chr5:112889287 3'AG 112889287 Downstream 29bp 7905 chr5 112889315 112889315 1 + T G ESCA 112889316 + 112889296 112889336 41 TAATTTTTCTGCCTGGATATGACGAAATTGTTGGACTGAGA TAATTTTTCTGCCTGGATAGGACGAAATTGTTGGACTGAGA < 41bp 0.840661733383405 0.570679590594851 NA NA prediction 0.539964285577108 Functional Loss - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112889316 chr5:112889315 stopgain 1.000 1 20 hm7G_associated_SNPs_8206 0 0 1 0 2 YTHDC2 chr5:112889383 5'GT 112889383 Upstream 69bp 7906 chr12 12243752 12243752 1 + T G UCEC 12243753 + 12243733 12243773 41 GCCAAAATTGTTGAGCTGCTGAAATATTCAGGAGATCAGTT GCCAAAATTGTTGAGCTGCGGAAATATTCAGGAGATCAGTT < 41bp 0.769972518289555 0.46055704359152 NA NA prediction 0.539945036579109 Functional Loss - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12243753 chr12:12243752 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8207 0 0 0 8 2 BCL2L14 chr12:12243713 3'AG 12243713 Downstream 40bp 7907 chr12 12243752 12243752 1 + T G UCEC 12243753 + 12243733 12243773 41 GCCAAAATTGTTGAGCTGCTGAAATATTCAGGAGATCAGTT GCCAAAATTGTTGAGCTGCGGAAATATTCAGGAGATCAGTT < 41bp 0.769972518289555 0.46055704359152 NA NA prediction 0.539945036579109 Functional Loss - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12243753 chr12:12243752 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8207 0 0 0 8 2 BCL2L14 chr12:12243783 5'GT 12243783 Upstream 32bp 7908 chr11 292034 292034 1 + T G UCEC 292035 + 292015 292055 41 GAAGCCGCCAGGGCCATCCTGGAGTACCGCATCCGCACGCT GAAGCCGCCAGGGCCATCCGGGAGTACCGCATCCGCACGCT < 41bp 0.769750941901219 0.418688558412536 NA NA prediction 0.539501883802439 Functional Loss - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292035 chr11:292034 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_8211 0 0 1 0 2 PGGHG chr11:291976 3'AG 291976 Downstream 59bp 7909 chr11 292034 292034 1 + T G UCEC 292035 + 292015 292055 41 GAAGCCGCCAGGGCCATCCTGGAGTACCGCATCCGCACGCT GAAGCCGCCAGGGCCATCCGGGAGTACCGCATCCGCACGCT < 41bp 0.769750941901219 0.418688558412536 NA NA prediction 0.539501883802439 Functional Loss - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292035 chr11:292034 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_8211 0 0 1 0 2 PGGHG chr11:292095 5'GT 292095 Upstream 62bp 7910 chr1 64680517 64680517 1 + T G BLCA 64680518 + 64680498 64680538 41 GTTATGCTTTCTAATCCAGTGCTAGAGAATCCAGTGAATTT GTTATGCTTTCTAATCCAGGGCTAGAGAATCCAGTGAATTT < 41bp 0.823712211940649 0.554058855165476 NA NA prediction 0.539306713550346 Functional Loss - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64680518 chr1:64680517 nonsynonymous SNV 0.396 0 20 hm7G_associated_SNPs_8212 0 0 0 0 2 UBE2U chr1:64680498 3'AG 64680498 Downstream 20bp 7911 chr1 64680517 64680517 1 + T G BLCA 64680518 + 64680498 64680538 41 GTTATGCTTTCTAATCCAGTGCTAGAGAATCCAGTGAATTT GTTATGCTTTCTAATCCAGGGCTAGAGAATCCAGTGAATTT < 41bp 0.823712211940649 0.554058855165476 NA NA prediction 0.539306713550346 Functional Loss - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64680518 chr1:64680517 nonsynonymous SNV 0.396 0 20 hm7G_associated_SNPs_8212 0 0 0 0 2 UBE2U chr1:64680615 5'GT 64680615 Upstream 99bp 7912 chr13 42793421 42793421 1 + T G GBM 42793422 + 42793402 42793442 41 GCCTTACACTCTGTGGAGGTGGAATTACAGAAACTGACAGA GCCTTACACTCTGTGGAGGGGGAATTACAGAAACTGACAGA < 41bp 0.769499528926484 0.444858661150631 NA NA prediction 0.538999057852969 Functional Loss - DGKH ENSG00000102780 CDS Human protein_coding chr13:42793422 chr13:42793421 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_8214 0 0 0 1 2 DGKH chr13:42793366 3'AG 42793366 Downstream 56bp 7913 chr13 42793421 42793421 1 + T G GBM 42793422 + 42793402 42793442 41 GCCTTACACTCTGTGGAGGTGGAATTACAGAAACTGACAGA GCCTTACACTCTGTGGAGGGGGAATTACAGAAACTGACAGA < 41bp 0.769499528926484 0.444858661150631 NA NA prediction 0.538999057852969 Functional Loss - DGKH ENSG00000102780 CDS Human protein_coding chr13:42793422 chr13:42793421 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_8214 0 0 0 1 2 DGKH chr13:42793485 5'GT 42793485 Upstream 65bp 7914 chr6 64401642 64401642 1 + T G LUSC 64401643 + 64401623 64401663 41 CCAGGTTTATGGTTGGCTGTGGGAGATGTGATGACTGGTTT CCAGGTTTATGGTTGGCTGGGGGAGATGTGATGACTGGTTT < 41bp 0.769388693858464 0.448657561002079 NA NA prediction 0.538777387716928 Functional Loss - PHF3 ENSG00000118482 CDS Human protein_coding chr6:64401643 chr6:64401642 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8216 0 0 1 0 1 PHF3 chr6:64401627 3'AG 64401627 Downstream 16bp 7915 chr15 90809586 90809586 1 + T G rs148744537 90809587 + 90809567 90809607 41 GGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACG GGCAAATGGAGGCGCCTGGGGCCCCGCCCAGGACCCTGACG < 41bp 0.857611620999205 0.588402838100211 NA NA prediction 0.538417565797987 Functional Loss - NGRN ENSG00000182768 CDS Human protein_coding chr15:90809587 chr15:90809586 synonymous SNV . 0 20 hm7G_associated_SNPs_8219 0 0 1 0 2 NGRN chr15:90809520 3'AG 90809520 Downstream 67bp 7916 chr15 90809586 90809586 1 + T G rs148744537 90809587 + 90809567 90809607 41 GGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACG GGCAAATGGAGGCGCCTGGGGCCCCGCCCAGGACCCTGACG < 41bp 0.857611620999205 0.588402838100211 NA NA prediction 0.538417565797987 Functional Loss - NGRN ENSG00000182768 CDS Human protein_coding chr15:90809587 chr15:90809586 synonymous SNV . 0 20 hm7G_associated_SNPs_8219 0 0 1 0 2 NGRN chr15:90809630 5'GT 90809630 Upstream 45bp 7917 chr7 102553545 102553545 1 - A C rs114626804 102553544 - 102553524 102553564 41 TCATCTATCTGGACCTCTCTGGCTGCACCCAGGTTTGTCTT TCATCTATCTGGACCTCTCGGGCTGCACCCAGGTTTGTCTT < 41bp 0.76906079616197 0.441751136545223 NA NA prediction 0.53812159232394 Functional Loss - FBXL13 ENSG00000161040 CDS Human protein_coding chr7:102553544 chr7:102553545 synonymous SNV . 0 20 hm7G_associated_SNPs_8223 0 0 1 0 1 FBXL13 chr7:102553533 5'GT 102553533 Upstream 13bp 7918 chr1 15767044 15767044 1 + T G GBM 15767045 + 15767025 15767065 41 CATACGTGTGGCGGGACTTTGATTGCTAGCAACTTCGTCCT CATACGTGTGGCGGGACTTGGATTGCTAGCAACTTCGTCCT < 41bp 0.866877429352441 0.597846628988601 NA NA prediction 0.53806160072768 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15767045 chr1:15767044 nonsynonymous SNV 0.026 5 20 hm7G_associated_SNPs_8225 0 0 0 0 2 CTRC chr1:15766989 3'AG 15766989 Downstream 56bp 7919 chr1 15767044 15767044 1 + T G GBM 15767045 + 15767025 15767065 41 CATACGTGTGGCGGGACTTTGATTGCTAGCAACTTCGTCCT CATACGTGTGGCGGGACTTGGATTGCTAGCAACTTCGTCCT < 41bp 0.866877429352441 0.597846628988601 NA NA prediction 0.53806160072768 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15767045 chr1:15767044 nonsynonymous SNV 0.026 5 20 hm7G_associated_SNPs_8225 0 0 0 0 2 CTRC chr1:15767086 5'GT 15767086 Upstream 43bp 7920 chr8 70476248 70476248 1 + T G HNSC 70476249 + 70476229 70476269 41 GCTCTGGTTTTGGCTGTCCTGGGCACAGAATTGCTGGGAAG GCTCTGGTTTTGGCTGTCCGGGGCACAGAATTGCTGGGAAG < 41bp 0.768967972743185 0.438761035036563 NA NA prediction 0.53793594548637 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70476249 chr8:70476248 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_8226 0 0 0 0 1 SULF1 chr8:70476151 3'AG 70476151 Downstream 98bp 7921 chr18 22007928 22007928 1 + T G SKCM 22007929 + 22007909 22007949 41 CATTTATGGCGAGGAGTGGTGTGTCATTGATGACTGTGCCA CATTTATGGCGAGGAGTGGGGTGTCATTGATGACTGTGCCA < 41bp 0.76895504251402 0.468837788979878 NA NA prediction 0.53791008502804 Functional Loss - IMPACT ENSG00000154059 CDS Human protein_coding chr18:22007929 chr18:22007928 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8227 0 0 1 0 2 IMPACT chr18:22007883 3'AG 22007883 Downstream 46bp 7922 chr18 22007928 22007928 1 + T G SKCM 22007929 + 22007909 22007949 41 CATTTATGGCGAGGAGTGGTGTGTCATTGATGACTGTGCCA CATTTATGGCGAGGAGTGGGGTGTCATTGATGACTGTGCCA < 41bp 0.76895504251402 0.468837788979878 NA NA prediction 0.53791008502804 Functional Loss - IMPACT ENSG00000154059 CDS Human protein_coding chr18:22007929 chr18:22007928 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8227 0 0 1 0 2 IMPACT chr18:22008011 5'GT 22008011 Upstream 84bp 7923 chr7 37988477 37988477 1 + T G STAD 37988478 + 37988458 37988498 41 TTGCTGTATAAGGATGGAGTGATGTTTCAGATTGACCAAGC TTGCTGTATAAGGATGGAGGGATGTTTCAGATTGACCAAGC < 41bp 0.841012396708332 0.572085285412717 NA NA prediction 0.537854222591231 Functional Loss - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37988478 chr7:37988477 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8229 0 0 1 0 1 EPDR1 chr7:37988442 3'AG 37988442 Downstream 36bp 7924 chr3 142523320 142523320 1 + T G BLCA 142523321 + 142523301 142523341 41 GTTTGCTCGAGCAAAATTATGGCTTAGCTACTTTGATGACA GTTTGCTCGAGCAAAATTAGGGCTTAGCTACTTTGATGACA < 41bp 0.768926623400283 0.457592426056095 NA NA prediction 0.537853246800567 Functional Loss - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142523321 chr3:142523320 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_8230 0 0 1 0 1 TRPC1 chr3:142523278 3'AG 142523278 Downstream 43bp 7925 chr15 43687810 43687810 1 + T G UCEC 43687811 + 43687791 43687831 41 ACTTTTACCTTCTGGGACGTGGAGAACTGTTTCAGGCCTTC ACTTTTACCTTCTGGGACGGGGAGAACTGTTTCAGGCCTTC < 41bp 0.857678618350842 0.588811336191738 NA NA prediction 0.53773456431821 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43687811 chr15:43687810 synonymous SNV . 0 20 hm7G_associated_SNPs_8231 0 0 1 1 2 TUBGCP4 chr15:43687781 3'AG 43687781 Downstream 30bp 7926 chr15 43687810 43687810 1 + T G UCEC 43687811 + 43687791 43687831 41 ACTTTTACCTTCTGGGACGTGGAGAACTGTTTCAGGCCTTC ACTTTTACCTTCTGGGACGGGGAGAACTGTTTCAGGCCTTC < 41bp 0.857678618350842 0.588811336191738 NA NA prediction 0.53773456431821 Functional Loss - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43687811 chr15:43687810 synonymous SNV . 0 20 hm7G_associated_SNPs_8231 0 0 1 1 2 TUBGCP4 chr15:43687886 5'GT 43687886 Upstream 77bp 7927 chr6 57472389 57472389 1 + T G LIHC 57472390 + 57472370 57472410 41 CGTCACAGTGATCCAGAGCTGCTGAAGCAAAAGTTGCAGTC CGTCACAGTGATCCAGAGCGGCTGAAGCAAAAGTTGCAGTC < 41bp 0.807059901113743 0.538293910741445 NA NA prediction 0.537531980744597 Functional Loss - PRIM2 ENSG00000146143 UTR3 Human protein_coding chr6:57472390 chr6:57472389 . 0.998 1 20 hm7G_associated_SNPs_8234 0 0 1 0 1 PRIM2 chr6:57472441 5'GT 57472441 Upstream 53bp 7928 chr1 93998541 93998541 1 + T G rs377284497 93998542 + 93998522 93998562 41 AGTGTTACAGAGGATTTGCTGACTCAGAACGCAAAGTTATT AGTGTTACAGAGGATTTGCGGACTCAGAACGCAAAGTTATT < 41bp 0.768734941294454 0.45934286786044 NA NA prediction 0.537469882588907 Functional Loss - FNBP1L ENSG00000137942 CDS Human protein_coding chr1:93998542 chr1:93998541 synonymous SNV . 0 20 hm7G_associated_SNPs_8235 0 0 1 0 1 FNBP1L chr1:93998479 3'AG 93998479 Downstream 63bp 7929 chr17 7578259 7578259 1 - A C BRCA 7578258 - 7578238 7578278 41 CCTCAGCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGA CCTCAGCATCTTATCCGAGGGGAAGGAAATTTGCGTGTGGA < 41bp 0.828707400829424 0.560081083829045 NA NA prediction 0.537252634000758 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7578258 chr17:7578259 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_8237 0 0 1 0 3 TP53 chr17:7578172 5'GT 7578172 Upstream 88bp 7930 chr17 7578259 7578259 1 - A C BRCA 7578258 - 7578238 7578278 41 CCTCAGCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGA CCTCAGCATCTTATCCGAGGGGAAGGAAATTTGCGTGTGGA < 41bp 0.828707400829424 0.560081083829045 NA NA prediction 0.537252634000758 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7578258 chr17:7578259 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_8237 0 0 1 0 3 TP53 chr17:7578177 5'GT 7578177 Upstream 83bp 7931 chr17 7578259 7578259 1 - A C BRCA 7578258 - 7578238 7578278 41 CCTCAGCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGA CCTCAGCATCTTATCCGAGGGGAAGGAAATTTGCGTGTGGA < 41bp 0.828707400829424 0.560081083829045 NA NA prediction 0.537252634000758 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7578258 chr17:7578259 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_8237 0 0 1 0 3 TP53 chr17:7578289 3'AG 7578289 Downstream 31bp 7932 chr19 6185606 6185606 1 + T G LUAD 6185607 + 6185587 6185627 41 ATGAAGGCTGGCTACACTCTGGGGATCTGGGCCAGCTGGAC ATGAAGGCTGGCTACACTCGGGGGATCTGGGCCAGCTGGAC < 41bp 0.862944742328674 0.594356950581279 NA NA prediction 0.53717558349479 Functional Loss - ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6185607 chr19:6185606 synonymous SNV . 0 20 hm7G_associated_SNPs_8238 0 0 0 0 1 ACSBG2 chr19:6185664 5'GT 6185664 Upstream 59bp 7933 chr3 14798940 14798940 1 + T G LUAD 14798941 + 14798921 14798961 41 TTGCCCTCAGACTGCCCGCTGGTGCTGCGGAAGCTCATGCT TTGCCCTCAGACTGCCCGCGGGTGCTGCGGAAGCTCATGCT < 41bp 0.867885198221598 0.599340665406458 NA NA prediction 0.537089065630281 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14798941 chr3:14798940 nonsynonymous SNV 0.948 3 20 hm7G_associated_SNPs_8240 0 0 0 0 1 C3orf20 chr3:14798878 3'AG 14798878 Downstream 63bp 7934 chr19 1978697 1978697 1 + T G STAD 1978698 + 1978678 1978718 41 CTGGAGGACCTGTTCGACCTGTGCGACCGGACCTTCACGCT CTGGAGGACCTGTTCGACCGGTGCGACCGGACCTTCACGCT < 41bp 0.863070456541811 0.594557230698431 NA NA prediction 0.537026451686759 Functional Loss - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978698 chr19:1978697 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8241 0 0 1 0 2 CSNK1G2 chr19:1978601 3'AG 1978601 Downstream 97bp 7935 chr19 1978697 1978697 1 + T G STAD 1978698 + 1978678 1978718 41 CTGGAGGACCTGTTCGACCTGTGCGACCGGACCTTCACGCT CTGGAGGACCTGTTCGACCGGTGCGACCGGACCTTCACGCT < 41bp 0.863070456541811 0.594557230698431 NA NA prediction 0.537026451686759 Functional Loss - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978698 chr19:1978697 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8241 0 0 1 0 2 CSNK1G2 chr19:1978749 5'GT 1978749 Upstream 53bp 7936 chr12 107219572 107219572 1 + T G rs183725820 107219573 + 107219553 107219593 41 TACTAATCGTAGGTCCAACTGAAGACAAAACAGAAGAGCTA TACTAATCGTAGGTCCAACGGAAGACAAAACAGAAGAGCTA < 41bp 0.844918135599059 0.576425358013554 NA NA prediction 0.53698555517101 Functional Loss - RIC8B ENSG00000111785 CDS Human protein_coding chr12:107219573 chr12:107219572 synonymous SNV . 0 20 hm7G_associated_SNPs_8242 0 0 1 0 1 RIC8B chr12:107219598 5'GT 107219598 Upstream 27bp 7937 chr6 16295255 16295255 1 + T G CESC 16295256 + 16295236 16295276 41 GAGCCTCTGAGGGTAAGACTGTGGAAGTTCCTTACAAAGGA GAGCCTCTGAGGGTAAGACGGTGGAAGTTCCTTACAAAGGA < 41bp 0.768369844651763 0.473083474769443 NA NA prediction 0.536739689303526 Functional Loss - GMPR ENSG00000137198 CDS Human protein_coding chr6:16295256 chr6:16295255 synonymous SNV . 0 20 hm7G_associated_SNPs_8246 0 0 0 0 1 GMPR chr6:16295237 3'AG 16295237 Downstream 19bp 7938 chr20 3028462 3028462 1 + T G rs559030416 3028463 + 3028443 3028483 41 CTCCCGGAAGAACTACAACTGGGCCATCACCAGAGAGGGGC CTCCCGGAAGAACTACAACGGGGCCATCACCAGAGAGGGGC < 41bp 0.840138984068361 0.571774975065554 NA NA prediction 0.536728018005614 Functional Loss - MRPS26 ENSG00000125901 CDS Human protein_coding chr20:3028463 chr20:3028462 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8248 0 0 1 0 1 MRPS26 chr20:3028381 3'AG 3028381 Downstream 82bp 7939 chr3 125643857 125643857 1 + T G rs184912988 125643858 + 125643838 125643878 41 TTGCTGGTCGGGGTCCTGCTGAGGCTGGCTGCCTGCCGGGA TTGCTGGTCGGGGTCCTGCGGAGGCTGGCTGCCTGCCGGGA < 41bp 0.768348254013527 0.474574911126218 NA NA prediction 0.536696508027054 Functional Loss - FAM86JP ENSG00000171084 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr3:125643858 chr3:125643857 . . 0 20 hm7G_associated_SNPs_8249 0 0 0 0 1 FAM86JP chr3:125643809 3'AG 125643809 Downstream 49bp 7940 chr12 106853057 106853057 1 + T G STAD 106853058 + 106853038 106853078 41 TAGAAAACAAACAAGTGCTTGTAAATAAGTCCATGCCCACA TAGAAAACAAACAAGTGCTGGTAAATAAGTCCATGCCCACA < 41bp 0.768305386441087 0.455098795747905 NA NA prediction 0.536610772882174 Functional Loss - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106853058 chr12:106853057 synonymous SNV . 0 20 hm7G_associated_SNPs_8250 0 0 0 0 2 POLR3B chr12:106853029 3'AG 106853029 Downstream 29bp 7941 chr12 106853057 106853057 1 + T G STAD 106853058 + 106853038 106853078 41 TAGAAAACAAACAAGTGCTTGTAAATAAGTCCATGCCCACA TAGAAAACAAACAAGTGCTGGTAAATAAGTCCATGCCCACA < 41bp 0.768305386441087 0.455098795747905 NA NA prediction 0.536610772882174 Functional Loss - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106853058 chr12:106853057 synonymous SNV . 0 20 hm7G_associated_SNPs_8250 0 0 0 0 2 POLR3B chr12:106853146 5'GT 106853146 Upstream 90bp 7942 chr2 187366001 187366001 1 + T G LUAD 187366002 + 187365982 187366022 41 ATATGCCATTTGACATAGGTGCAGATCCCAAGTCTGTAGTA ATATGCCATTTGACATAGGGGCAGATCCCAAGTCTGTAGTA < 41bp 0.768270058575749 0.455450405832868 NA NA prediction 0.536540117151498 Functional Loss - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187366002 chr2:187366001 synonymous SNV . 0 20 hm7G_associated_SNPs_8253 0 0 1 0 1 ZC3H15 chr2:187366000 3'AG 187366000 Downstream 2bp 7943 chr4 177073102 177073102 1 + T G UCEC 177073103 + 177073083 177073123 41 CAGAGATACTGTGAACTTATGGTTGAACTTGGAGAGGTAAT CAGAGATACTGTGAACTTAGGGTTGAACTTGGAGAGGTAAT < 41bp 0.822988001014329 0.554830793412567 NA NA prediction 0.536314415203524 Functional Loss - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177073103 chr4:177073102 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8256 0 0 0 0 1 WDR17 chr4:177073118 5'GT 177073118 Upstream 17bp 7944 chr20 56726068 56726068 1 + T G PRAD 56726069 + 56726049 56726089 41 CGGCTGAACGCATGAACCTTGTGGGTCAGGATGAGATCTGG CGGCTGAACGCATGAACCTGGTGGGTCAGGATGAGATCTGG < 41bp 0.834885069781586 0.56678123997255 NA NA prediction 0.536207659618071 Functional Loss - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56726069 chr20:56726068 synonymous SNV . 0 20 hm7G_associated_SNPs_8257 0 0 0 0 1 C20orf85 chr20:56726088 5'GT 56726088 Upstream 21bp 7945 chrX 17767563 17767563 1 + T G SARC 17767564 + 17767544 17767584 41 CTGGATAAGAAGATTGATGTGATTCGTAGAAAGGTTTCAAA CTGGATAAGAAGATTGATGGGATTCGTAGAAAGGTTTCAAA < 41bp 0.837500849254908 0.569433667348608 NA NA prediction 0.5361343638126 Functional Loss - SCML1 ENSG00000047634 CDS Human protein_coding chrX:17767564 chrX:17767563 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_8259 0 0 1 0 2 SCML1 chrX:17767520 3'AG 17767520 Downstream 44bp 7946 chrX 17767563 17767563 1 + T G SARC 17767564 + 17767544 17767584 41 CTGGATAAGAAGATTGATGTGATTCGTAGAAAGGTTTCAAA CTGGATAAGAAGATTGATGGGATTCGTAGAAAGGTTTCAAA < 41bp 0.837500849254908 0.569433667348608 NA NA prediction 0.5361343638126 Functional Loss - SCML1 ENSG00000047634 CDS Human protein_coding chrX:17767564 chrX:17767563 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_8259 0 0 1 0 2 SCML1 chrX:17767624 5'GT 17767624 Upstream 62bp 7947 chr2 108994896 108994896 1 + T G UCEC 108994897 + 108994877 108994917 41 GACAGACACCTGTGACATCTGGGATAAGATCTGGAACTTCC GACAGACACCTGTGACATCGGGGATAAGATCTGGAACTTCC < 41bp 0.844210882871105 0.576304155017512 NA NA prediction 0.535813455707187 Functional Loss - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108994897 chr2:108994896 nonsynonymous SNV 0.579 4 20 hm7G_associated_SNPs_8261 0 0 1 1 1 SULT1C4 chr2:108994962 5'GT 108994962 Upstream 67bp 7948 chr19 7076457 7076457 1 + T G rs142878848 7076458 + 7076438 7076478 41 AGTGGGCATTGCTGGACCCTGCCCAAAGGACACTGTACAGG AGTGGGCATTGCTGGACCCGGCCCAAAGGACACTGTACAGG < 41bp 0.767875260211543 0.431612776447116 NA NA prediction 0.535750520423086 Functional Loss - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7076458 chr19:7076457 synonymous SNV . 0 20 hm7G_associated_SNPs_8263 0 0 1 0 2 ZNF557 chr19:7076392 3'AG 7076392 Downstream 66bp 7949 chr19 7076457 7076457 1 + T G rs142878848 7076458 + 7076438 7076478 41 AGTGGGCATTGCTGGACCCTGCCCAAAGGACACTGTACAGG AGTGGGCATTGCTGGACCCGGCCCAAAGGACACTGTACAGG < 41bp 0.767875260211543 0.431612776447116 NA NA prediction 0.535750520423086 Functional Loss - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7076458 chr19:7076457 synonymous SNV . 0 20 hm7G_associated_SNPs_8263 0 0 1 0 2 ZNF557 chr19:7076518 5'GT 7076518 Upstream 62bp 7950 chr1 184567589 184567589 1 + T G BLCA 184567590 + 184567570 184567610 41 GAATGCTGGATGAAAAAATTGAAAAGGTAAGAAGTGAAATA GAATGCTGGATGAAAAAATGGAAAAGGTAAGAAGTGAAATA < 41bp 0.767847822584423 0.468096631589336 NA NA prediction 0.535695645168846 Functional Loss - C1orf21 ENSG00000116667 CDS Human protein_coding chr1:184567590 chr1:184567589 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_8264 0 0 1 0 2 C1orf21 chr1:184567535 3'AG 184567535 Downstream 55bp 7951 chr1 184567589 184567589 1 + T G BLCA 184567590 + 184567570 184567610 41 GAATGCTGGATGAAAAAATTGAAAAGGTAAGAAGTGAAATA GAATGCTGGATGAAAAAATGGAAAAGGTAAGAAGTGAAATA < 41bp 0.767847822584423 0.468096631589336 NA NA prediction 0.535695645168846 Functional Loss - C1orf21 ENSG00000116667 CDS Human protein_coding chr1:184567590 chr1:184567589 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_8264 0 0 1 0 2 C1orf21 chr1:184567595 5'GT 184567595 Upstream 7bp 7952 chr17 7463474 7463474 1 + T G THYM 7463475 + 7463455 7463495 41 GATGCTGGAGTTTATCTGCTGTATAGCCAGGTAACCCCAGC GATGCTGGAGTTTATCTGCGGTATAGCCAGGTAACCCCAGC < 41bp 0.767828343790274 0.446727575466449 NA NA prediction 0.535656687580547 Functional Loss - TNFSF12-TNFSF13;TNFSF13 ENSG00000161955;ENSG00000239697;ENSG00000248871 CDS Human other chr17:7463475 chr17:7463474 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8265 0 0 0 0 1 TNFSF12-TNFSF13;TNFSF13 chr17:7463484 5'GT 7463484 Upstream 11bp 7953 chr1 46034875 46034875 1 + T G UCEC 46034876 + 46034856 46034896 41 AAATGCCCTGAACAAAAATTGGAGATATATTGTGCCTATGC AAATGCCCTGAACAAAAATGGGAGATATATTGTGCCTATGC < 41bp 0.767728567829996 0.445761848835735 NA NA prediction 0.535457135659992 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46034876 chr1:46034875 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8267 0 0 1 0 2 AKR1A1 chr1:46034815 3'AG 46034815 Downstream 61bp 7954 chr1 46034875 46034875 1 + T G UCEC 46034876 + 46034856 46034896 41 AAATGCCCTGAACAAAAATTGGAGATATATTGTGCCTATGC AAATGCCCTGAACAAAAATGGGAGATATATTGTGCCTATGC < 41bp 0.767728567829996 0.445761848835735 NA NA prediction 0.535457135659992 Functional Loss - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46034876 chr1:46034875 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8267 0 0 1 0 2 AKR1A1 chr1:46034901 5'GT 46034901 Upstream 27bp 7955 chr10 43971579 43971579 1 + T G rs41306552 43971580 + 43971560 43971600 41 TGCATTACCAAACCAGAGGTGGTTTGCAAGTTGGAGCATGG TGCATTACCAAACCAGAGGGGGTTTGCAAGTTGGAGCATGG < 41bp 0.849213531881539 0.581562258614737 NA NA prediction 0.535302546533604 Functional Loss - ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971580 chr10:43971579 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_8269 0 0 0 0 2 ZNF487 chr10:43971555 3'AG 43971555 Downstream 25bp 7956 chr10 43971579 43971579 1 + T G rs41306552 43971580 + 43971560 43971600 41 TGCATTACCAAACCAGAGGTGGTTTGCAAGTTGGAGCATGG TGCATTACCAAACCAGAGGGGGTTTGCAAGTTGGAGCATGG < 41bp 0.849213531881539 0.581562258614737 NA NA prediction 0.535302546533604 Functional Loss - ZNF487 ENSG00000243660 CDS Human protein_coding chr10:43971580 chr10:43971579 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_8269 0 0 0 0 2 ZNF487 chr10:43971650 5'GT 43971650 Upstream 72bp 7957 chr2 43965500 43965500 1 + T G SKCM 43965501 + 43965481 43965521 41 CCTGCCAGCTTTTTATAAATGCTGCAGTTGACTCTCCTGCA CCTGCCAGCTTTTTATAAAGGCTGCAGTTGACTCTCCTGCA < 41bp 0.767648161531401 0.459090003937454 NA NA prediction 0.535296323062802 Functional Loss - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43965501 chr2:43965500 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8270 0 0 0 0 1 PLEKHH2 chr2:43965480 3'AG 43965480 Downstream 21bp 7958 chr11 67047111 67047111 1 + T G SKCM 67047112 + 67047092 67047132 41 CCCAGCCCTTCTCGAAGAGTGCCACTGAGCATGTCCAAGGC CCCAGCCCTTCTCGAAGAGGGCCACTGAGCATGTCCAAGGC < 41bp 0.872652894169046 0.605067094163178 NA NA prediction 0.535171600011737 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047112 chr11:67047111 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_8271 0 0 1 0 2 GRK2 chr11:67047097 3'AG 67047097 Downstream 15bp 7959 chr11 67047111 67047111 1 + T G SKCM 67047112 + 67047092 67047132 41 CCCAGCCCTTCTCGAAGAGTGCCACTGAGCATGTCCAAGGC CCCAGCCCTTCTCGAAGAGGGCCACTGAGCATGTCCAAGGC < 41bp 0.872652894169046 0.605067094163178 NA NA prediction 0.535171600011737 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67047112 chr11:67047111 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_8271 0 0 1 0 2 GRK2 chr11:67047171 5'GT 67047171 Upstream 61bp 7960 chr19 45411116 45411116 1 + T G LGG 45411117 + 45411097 45411137 41 CAGCGCTGGGAACTGGCACTGGGTCGCTTTTGGGATTACCT CAGCGCTGGGAACTGGCACGGGGTCGCTTTTGGGATTACCT < 41bp 0.767462836270314 0.426235483535245 NA NA prediction 0.534925672540628 Functional Loss - APOE ENSG00000130203 CDS Human protein_coding chr19:45411117 chr19:45411116 nonsynonymous SNV 0.008 2 20 hm7G_associated_SNPs_8275 0 0 1 0 2 APOE chr19:45411017 3'AG 45411017 Downstream 100bp 7961 chr19 45411116 45411116 1 + T G LGG 45411117 + 45411097 45411137 41 CAGCGCTGGGAACTGGCACTGGGTCGCTTTTGGGATTACCT CAGCGCTGGGAACTGGCACGGGGTCGCTTTTGGGATTACCT < 41bp 0.767462836270314 0.426235483535245 NA NA prediction 0.534925672540628 Functional Loss - APOE ENSG00000130203 CDS Human protein_coding chr19:45411117 chr19:45411116 nonsynonymous SNV 0.008 2 20 hm7G_associated_SNPs_8275 0 0 1 0 2 APOE chr19:45411209 5'GT 45411209 Upstream 94bp 7962 chr5 50093060 50093060 1 + T G ESCA 50093061 + 50093041 50093081 41 GTGTTTCAAAATGGCCCTATGCTTAGGGTAAGTTCTTGCTG GTGTTTCAAAATGGCCCTAGGCTTAGGGTAAGTTCTTGCTG < 41bp 0.789243347867914 0.521794559332947 NA NA prediction 0.534897577069936 Functional Loss - PARP8 ENSG00000151883 CDS Human protein_coding chr5:50093061 chr5:50093060 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8276 0 0 0 0 1 PARP8 chr5:50092972 3'AG 50092972 Downstream 89bp 7963 chr12 81627211 81627211 1 + T G SKCM 81627212 + 81627192 81627232 41 GAGTGGATGATGTAATAAATGTTGCAGGTCACAGAATTTCT GAGTGGATGATGTAATAAAGGTTGCAGGTCACAGAATTTCT < 41bp 0.839037258733277 0.571678434468775 NA NA prediction 0.534717648529004 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81627212 chr12:81627211 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8277 0 0 1 0 2 ACSS3 chr12:81627128 3'AG 81627128 Downstream 84bp 7964 chr12 81627211 81627211 1 + T G SKCM 81627212 + 81627192 81627232 41 GAGTGGATGATGTAATAAATGTTGCAGGTCACAGAATTTCT GAGTGGATGATGTAATAAAGGTTGCAGGTCACAGAATTTCT < 41bp 0.839037258733277 0.571678434468775 NA NA prediction 0.534717648529004 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81627212 chr12:81627211 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8277 0 0 1 0 2 ACSS3 chr12:81627250 5'GT 81627250 Upstream 40bp 7965 chr2 234969059 234969059 1 + T G LUAD 234969060 + 234969040 234969080 41 AAGGTATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCGCTG AAGGTATCTGCCCAGCAGGGGCAGGGCGTGCATGCTCGCTG < 41bp 0.858098023607794 0.59081810848006 NA NA prediction 0.534559830255467 Functional Loss - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234969060 chr2:234969059 nonsynonymous SNV 0.034 2 20 hm7G_associated_SNPs_8278 0 0 0 0 2 SPP2 chr2:234969013 3'AG 234969013 Downstream 47bp 7966 chr2 234969059 234969059 1 + T G LUAD 234969060 + 234969040 234969080 41 AAGGTATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCGCTG AAGGTATCTGCCCAGCAGGGGCAGGGCGTGCATGCTCGCTG < 41bp 0.858098023607794 0.59081810848006 NA NA prediction 0.534559830255467 Functional Loss - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234969060 chr2:234969059 nonsynonymous SNV 0.034 2 20 hm7G_associated_SNPs_8278 0 0 0 0 2 SPP2 chr2:234969123 5'GT 234969123 Upstream 65bp 7967 chr16 20837226 20837226 1 + T G UCEC 20837227 + 20837207 20837247 41 GAGGCTGCTGTGTTATGGATGAACTGGTCAAACCTGAAAAC GAGGCTGCTGTGTTATGGAGGAACTGGTCAAACCTGAAAAC < 41bp 0.767206743776686 0.43595385521339 NA NA prediction 0.534413487553373 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20837227 chr16:20837226 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8280 0 0 1 0 2 REXO5 chr16:20837155 3'AG 20837155 Downstream 72bp 7968 chr16 20837226 20837226 1 + T G UCEC 20837227 + 20837207 20837247 41 GAGGCTGCTGTGTTATGGATGAACTGGTCAAACCTGAAAAC GAGGCTGCTGTGTTATGGAGGAACTGGTCAAACCTGAAAAC < 41bp 0.767206743776686 0.43595385521339 NA NA prediction 0.534413487553373 Functional Loss - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20837227 chr16:20837226 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8280 0 0 1 0 2 REXO5 chr16:20837270 5'GT 20837270 Upstream 45bp 7969 chr6 170190418 170190418 1 + T G rs3823467 170190419 + 170190399 170190439 41 GGCACGGGGTGGCGCTCCCTGGTAAAGCAGCGGCCAGGGGG GGCACGGGGTGGCGCTCCCGGGTAAAGCAGCGGCCAGGGGG < 41bp 0.767164208790761 0.466759444093925 NA NA prediction 0.534328417581522 Functional Loss - LINC00242;LINC00574 ENSG00000229214;ENSG00000231690 ncRNA_exonic Human other chr6:170190419 chr6:170190418 . . 0 20 hm7G_associated_SNPs_8281 0 0 0 0 1 LINC00242;LINC00574 chr6:170190512 5'GT 170190512 Upstream 95bp 7970 chr2 162799343 162799343 1 + T G LIHC 162799344 + 162799324 162799364 41 AATCCCAGCAATGGCACATTGAAGGAATGGAGGGAATCCAA AATCCCAGCAATGGCACATGGAAGGAATGGAGGGAATCCAA < 41bp 0.767130448584496 0.461114277953764 NA NA prediction 0.534260897168992 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162799344 chr2:162799343 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_8282 0 0 0 0 2 SLC4A10 chr2:162799302 3'AG 162799302 Downstream 42bp 7971 chr2 162799343 162799343 1 + T G LIHC 162799344 + 162799324 162799364 41 AATCCCAGCAATGGCACATTGAAGGAATGGAGGGAATCCAA AATCCCAGCAATGGCACATGGAAGGAATGGAGGGAATCCAA < 41bp 0.767130448584496 0.461114277953764 NA NA prediction 0.534260897168992 Functional Loss - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162799344 chr2:162799343 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_8282 0 0 0 0 2 SLC4A10 chr2:162799407 5'GT 162799407 Upstream 65bp 7972 chr2 27246243 27246243 1 + T G ESCA 27246244 + 27246224 27246264 41 ACATGCTCTTCCCCGGCTGTGTGCACTTGAGGAAAGTGAAG ACATGCTCTTCCCCGGCTGGGTGCACTTGAGGAAAGTGAAG < 41bp 0.767100995702986 0.430006708811781 NA NA prediction 0.534201991405971 Functional Loss - MAPRE3 ENSG00000084764 CDS Human protein_coding chr2:27246244 chr2:27246243 nonsynonymous SNV 0.892 4 20 hm7G_associated_SNPs_8283 0 0 1 0 1 MAPRE3 chr2:27246200 3'AG 27246200 Downstream 44bp 7973 chr10 95400298 95400298 1 + T G STAD 95400299 + 95400279 95400319 41 TTCAACGTGGGGCAGACCATGTTTACTTTGCTGATGGTAGG TTCAACGTGGGGCAGACCAGGTTTACTTTGCTGATGGTAGG < 41bp 0.766922943631658 0.455628140753325 NA NA prediction 0.533845887263316 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400299 chr10:95400298 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8288 0 0 0 0 2 PDE6C chr10:95400207 3'AG 95400207 Downstream 92bp 7974 chr10 95400298 95400298 1 + T G STAD 95400299 + 95400279 95400319 41 TTCAACGTGGGGCAGACCATGTTTACTTTGCTGATGGTAGG TTCAACGTGGGGCAGACCAGGTTTACTTTGCTGATGGTAGG < 41bp 0.766922943631658 0.455628140753325 NA NA prediction 0.533845887263316 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400299 chr10:95400298 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8288 0 0 0 0 2 PDE6C chr10:95400314 5'GT 95400314 Upstream 17bp 7975 chr13 49762751 49762751 1 + T G UCEC 49762752 + 49762732 49762772 41 TACGAGTTTACTGCATCAGTGATGGAGGACAGAGTGCGGTA TACGAGTTTACTGCATCAGGGATGGAGGACAGAGTGCGGTA < 41bp 0.844891917628008 0.578228236849918 NA NA prediction 0.533327361556181 Functional Loss - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49762752 chr13:49762751 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8292 0 0 1 0 1 FNDC3A chr13:49762769 5'GT 49762769 Upstream 19bp 7976 chr7 39500170 39500170 1 + T G SKCM 39500171 + 39500151 39500191 41 CAAACGGCAGCGGGTGAGGTGGATGGGGTTAATCTGGAGGA CAAACGGCAGCGGGTGAGGGGGATGGGGTTAATCTGGAGGA < 41bp 0.766652754193357 0.461029705254253 NA NA prediction 0.533305508386713 Functional Loss - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39500171 chr7:39500170 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8293 0 0 0 0 1 POU6F2 chr7:39500146 3'AG 39500146 Downstream 25bp 7977 chr4 71390668 71390668 1 + T G LUAD 71390669 + 71390649 71390689 41 TTGAATGTACAACAGCAACTGCACCCACATGTAAGTTGAAC TTGAATGTACAACAGCAACGGCACCCACATGTAAGTTGAAC < 41bp 0.847509104737708 0.580860090639496 NA NA prediction 0.533298028196424 Functional Loss - AMTN ENSG00000187689 CDS Human protein_coding chr4:71390669 chr4:71390668 nonsynonymous SNV 0.697 3 20 hm7G_associated_SNPs_8294 0 0 0 0 2 AMTN chr4:71390589 3'AG 71390589 Downstream 80bp 7978 chr4 71390668 71390668 1 + T G LUAD 71390669 + 71390649 71390689 41 TTGAATGTACAACAGCAACTGCACCCACATGTAAGTTGAAC TTGAATGTACAACAGCAACGGCACCCACATGTAAGTTGAAC < 41bp 0.847509104737708 0.580860090639496 NA NA prediction 0.533298028196424 Functional Loss - AMTN ENSG00000187689 CDS Human protein_coding chr4:71390669 chr4:71390668 nonsynonymous SNV 0.697 3 20 hm7G_associated_SNPs_8294 0 0 0 0 2 AMTN chr4:71390678 5'GT 71390678 Upstream 11bp 7979 chr11 71847030 71847030 1 + T G UCEC 71847031 + 71847011 71847051 41 TGGCAGATGATGCAGCTGCTGCTTCTGGCTTTGGTGACTGC TGGCAGATGATGCAGCTGCGGCTTCTGGCTTTGGTGACTGC < 41bp 0.861590334290481 0.595004481696918 NA NA prediction 0.533171705187127 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71847031 chr11:71847030 nonsynonymous SNV 0.438 1 20 hm7G_associated_SNPs_8296 0 0 0 0 1 FOLR3 chr11:71846993 3'AG 71846993 Downstream 38bp 7980 chr1 202205096 202205096 1 + T G BLCA 202205097 + 202205077 202205117 41 AATCCCCGCAGAGGCGCTGTGGGAGCTGCCGAGCCTGCAGT AATCCCCGCAGAGGCGCTGGGGGAGCTGCCGAGCCTGCAGT < 41bp 0.766577561065922 0.425053239020118 NA NA prediction 0.533155122131843 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205097 chr1:202205096 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_8297 0 0 0 0 2 LGR6 chr1:202205050 3'AG 202205050 Downstream 47bp 7981 chr1 202205096 202205096 1 + T G BLCA 202205097 + 202205077 202205117 41 AATCCCCGCAGAGGCGCTGTGGGAGCTGCCGAGCCTGCAGT AATCCCCGCAGAGGCGCTGGGGGAGCTGCCGAGCCTGCAGT < 41bp 0.766577561065922 0.425053239020118 NA NA prediction 0.533155122131843 Functional Loss - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202205097 chr1:202205096 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_8297 0 0 0 0 2 LGR6 chr1:202205121 5'GT 202205121 Upstream 26bp 7982 chr11 65827422 65827422 1 + T G COAD 65827423 + 65827403 65827443 41 GAGAAGCCCCCCTTCGAGCTGCCAGACTTCATCAAACGCAC GAGAAGCCCCCCTTCGAGCGGCCAGACTTCATCAAACGCAC < 41bp 0.766565705485984 0.423402916397089 NA NA prediction 0.533131410971968 Functional Loss - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65827423 chr11:65827422 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8298 0 0 1 0 1 SF3B2 chr11:65827480 5'GT 65827480 Upstream 59bp 7983 chr1 159166222 159166222 1 + T G STAD 159166223 + 159166203 159166243 41 CCAGAAGCTGTTGCTACACTGTGAGGGTCGCGGCAATCCAG CCAGAAGCTGTTGCTACACGGTGAGGGTCGCGGCAATCCAG < 41bp 0.766565590546604 0.435563304155845 NA NA prediction 0.533131181093208 Functional Loss - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159166223 chr1:159166222 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8299 0 0 0 0 1 CADM3 chr1:159166154 3'AG 159166154 Downstream 69bp 7984 chr1 150310768 150310768 1 + T G UCEC 150310769 + 150310749 150310789 41 TATTCCTGAAATTGAGTGGTGGGACTCTTACATAATCCCCA TATTCCTGAAATTGAGTGGGGGGACTCTTACATAATCCCCA < 41bp 0.766530558695907 0.438547271170368 NA NA prediction 0.533061117391814 Functional Loss - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150310769 chr1:150310768 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8300 0 0 1 0 1 PRPF3 chr1:150310802 5'GT 150310802 Upstream 35bp 7985 chr4 17825372 17825372 1 + T G COAD 17825373 + 17825353 17825393 41 TACTCCACATCATTATAGATGATAATAAGAGAACACAAATT TACTCCACATCATTATAGAGGATAATAAGAGAACACAAATT < 41bp 0.825744288938309 0.559228925972646 NA NA prediction 0.533030725931327 Functional Loss - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17825373 chr4:17825372 nonsynonymous SNV 0.930 1 20 hm7G_associated_SNPs_8301 0 0 1 0 2 NCAPG chr4:17825295 3'AG 17825295 Downstream 78bp 7986 chr4 17825372 17825372 1 + T G COAD 17825373 + 17825353 17825393 41 TACTCCACATCATTATAGATGATAATAAGAGAACACAAATT TACTCCACATCATTATAGAGGATAATAAGAGAACACAAATT < 41bp 0.825744288938309 0.559228925972646 NA NA prediction 0.533030725931327 Functional Loss - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17825373 chr4:17825372 nonsynonymous SNV 0.930 1 20 hm7G_associated_SNPs_8301 0 0 1 0 2 NCAPG chr4:17825393 5'GT 17825393 Upstream 22bp 7987 chr11 55655656 55655656 1 + T G SARC 55655657 + 55655637 55655677 41 AATGAAAGCAAAGCCAGAATGGAACATTCCAGGGAGCTTTT AATGAAAGCAAAGCCAGAAGGGAACATTCCAGGGAGCTTTT < 41bp 0.846816027672702 0.580346061261985 NA NA prediction 0.532939932821434 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55655657 chr11:55655656 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_8303 0 0 0 0 1 TRIM51 chr11:55655738 5'GT 55655738 Upstream 83bp 7988 chr3 142405148 142405148 1 + T G GBM 142405149 + 142405129 142405169 41 TCGAGAGCCTATTTTCATCTGCTTAATCAGATTGCCCCTAA TCGAGAGCCTATTTTCATCGGCTTAATCAGATTGCCCCTAA < 41bp 0.856847330549181 0.590393180699694 NA NA prediction 0.532908299698974 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142405149 chr3:142405148 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_8304 0 0 1 0 2 PLS1 chr3:142405126 3'AG 142405126 Downstream 23bp 7989 chr3 142405148 142405148 1 + T G GBM 142405149 + 142405129 142405169 41 TCGAGAGCCTATTTTCATCTGCTTAATCAGATTGCCCCTAA TCGAGAGCCTATTTTCATCGGCTTAATCAGATTGCCCCTAA < 41bp 0.856847330549181 0.590393180699694 NA NA prediction 0.532908299698974 Functional Loss - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142405149 chr3:142405148 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_8304 0 0 1 0 2 PLS1 chr3:142405218 5'GT 142405218 Upstream 71bp 7990 chrX 115573940 115573940 1 + T G LUAD 115573941 + 115573921 115573961 41 ATAGTCTTTACTACATGTTTGCTTCTTTTCAAAGTGAACTA ATAGTCTTTACTACATGTTGGCTTCTTTTCAAAGTGAACTA < 41bp 0.766448528968076 0.452996466428833 NA NA prediction 0.532897057936151 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115573941 chrX:115573940 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8305 0 0 0 0 2 SLC6A14 chrX:115573855 3'AG 115573855 Downstream 86bp 7991 chrX 115573940 115573940 1 + T G LUAD 115573941 + 115573921 115573961 41 ATAGTCTTTACTACATGTTTGCTTCTTTTCAAAGTGAACTA ATAGTCTTTACTACATGTTGGCTTCTTTTCAAAGTGAACTA < 41bp 0.766448528968076 0.452996466428833 NA NA prediction 0.532897057936151 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115573941 chrX:115573940 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8305 0 0 0 0 2 SLC6A14 chrX:115574016 5'GT 115574016 Upstream 77bp 7992 chr12 53677033 53677033 1 + T G SARC 53677034 + 53677014 53677054 41 GCTGTGGAGACATCGTTTTTGGACTATGGTGAGTCTGGGGA GCTGTGGAGACATCGTTTTGGGACTATGGTGAGTCTGGGGA < 41bp 0.766426917241247 0.426822272789762 NA NA prediction 0.532853834482494 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53677034 chr12:53677033 nonsynonymous SNV 0.810 2 20 hm7G_associated_SNPs_8306 0 0 1 0 1 ESPL1 chr12:53677041 5'GT 53677041 Upstream 9bp 7993 chr1 67450307 67450307 1 + T G COAD 67450308 + 67450288 67450328 41 ACAAAGAGGAAGTAAAAGTTGAAGGGTTACACATTAATGGA ACAAAGAGGAAGTAAAAGTGGAAGGGTTACACATTAATGGA < 41bp 0.772666654584005 0.50632181316777 NA NA prediction 0.532689682832471 Functional Loss - MIER1 ENSG00000198160 CDS Human protein_coding chr1:67450308 chr1:67450307 synonymous SNV . 0 20 hm7G_associated_SNPs_8310 0 0 1 0 2 MIER1 chr1:67450255 3'AG 67450255 Downstream 53bp 7994 chr1 67450307 67450307 1 + T G COAD 67450308 + 67450288 67450328 41 ACAAAGAGGAAGTAAAAGTTGAAGGGTTACACATTAATGGA ACAAAGAGGAAGTAAAAGTGGAAGGGTTACACATTAATGGA < 41bp 0.772666654584005 0.50632181316777 NA NA prediction 0.532689682832471 Functional Loss - MIER1 ENSG00000198160 CDS Human protein_coding chr1:67450308 chr1:67450307 synonymous SNV . 0 20 hm7G_associated_SNPs_8310 0 0 1 0 2 MIER1 chr1:67450335 5'GT 67450335 Upstream 29bp 7995 chr2 27522414 27522414 1 + T G UCEC 27522415 + 27522395 27522435 41 TAGAAACAGGATCTCACTCTGTTGCCCAGGCTGGAGTGCAG TAGAAACAGGATCTCACTCGGTTGCCCAGGCTGGAGTGCAG < 41bp 0.849029566306432 0.58271227818036 NA NA prediction 0.532634576252142 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27522415 chr2:27522414 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_8311 0 0 1 0 1 TRIM54 chr2:27522398 3'AG 27522398 Downstream 17bp 7996 chr19 20307839 20307839 1 + T G LUSC 20307840 + 20307820 20307860 41 AAAGATTCTTACCAAAAAGTGATACTGAGAAAATTTGAAAA AAAGATTCTTACCAAAAAGGGATACTGAGAAAATTTGAAAA < 41bp 0.766312403521125 0.479429123674343 NA NA prediction 0.53262480704225 Functional Loss - ZNF486 ENSG00000256229 CDS Human protein_coding chr19:20307840 chr19:20307839 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_8312 0 0 0 0 1 ZNF486 chr19:20307773 3'AG 20307773 Downstream 67bp 7997 chr12 55251988 55251988 1 + T G SKCM 55251989 + 55251969 55252009 41 TCTTGCAGTTTTACCCAAATGGGTTGGGGATCTCCCGAATG TCTTGCAGTTTTACCCAAAGGGGTTGGGGATCTCCCGAATG < 41bp 0.81388082295556 0.547590531793377 NA NA prediction 0.532580582324366 Functional Loss - MUCL1 ENSG00000172551 CDS Human protein_coding chr12:55251989 chr12:55251988 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_8313 0 0 0 0 1 MUCL1 chr12:55251977 3'AG 55251977 Downstream 12bp 7998 chr11 66190701 66190701 1 + T G SKCM 66190702 + 66190682 66190722 41 TCTGCTCAACACTACCGCCTGTGTGAGTGTCCAGAGAGGCT TCTGCTCAACACTACCGCCGGTGTGAGTGTCCAGAGAGGCT < 41bp 0.842707408888912 0.576431372337151 NA NA prediction 0.532552073103522 Functional Loss - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190702 chr11:66190701 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8314 0 0 0 0 1 NPAS4 chr11:66190703 5'GT 66190703 Upstream 3bp 7999 chr12 113319635 113319635 1 + T G LUSC 113319636 + 113319616 113319656 41 TACGTTAAGCTGCACCTCCTGCCGGGAGCCAGCAAGGTACC TACGTTAAGCTGCACCTCCGGCCGGGAGCCAGCAAGGTACC < 41bp 0.858265302103121 0.592060771096159 NA NA prediction 0.532409062013923 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113319636 chr12:113319635 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_8318 0 0 0 0 2 RPH3A chr12:113319577 3'AG 113319577 Downstream 59bp 8000 chr12 113319635 113319635 1 + T G LUSC 113319636 + 113319616 113319656 41 TACGTTAAGCTGCACCTCCTGCCGGGAGCCAGCAAGGTACC TACGTTAAGCTGCACCTCCGGCCGGGAGCCAGCAAGGTACC < 41bp 0.858265302103121 0.592060771096159 NA NA prediction 0.532409062013923 Functional Loss - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113319636 chr12:113319635 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_8318 0 0 0 0 2 RPH3A chr12:113319651 5'GT 113319651 Upstream 17bp 8001 chr9 102730754 102730754 1 + T G UCEC 102730755 + 102730735 102730775 41 CAGCTCTGCCTGTGGCAGGTGCACTCATCGGGGGAATGGTA CAGCTCTGCCTGTGGCAGGGGCACTCATCGGGGGAATGGTA < 41bp 0.831505174710422 0.565393290814189 NA NA prediction 0.532223767792467 Functional Loss - STX17 ENSG00000136874 CDS Human protein_coding chr9:102730755 chr9:102730754 synonymous SNV . 0 20 hm7G_associated_SNPs_8319 0 0 0 0 1 STX17 chr9:102730716 3'AG 102730716 Downstream 39bp 8002 chr3 9871030 9871030 1 + T G rs2290305 9871031 + 9871011 9871051 41 CGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACAC CGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACAC < 41bp 0.766075921848545 0.432374909199443 NA NA prediction 0.532151843697091 Functional Loss - ARPC4-TTLL3;TTLL3 ENSG00000214021;ENSG00000250151 CDS Human other chr3:9871031 chr3:9871030 nonsynonymous SNV 0.963 0 20 hm7G_associated_SNPs_8320 0 0 1 0 1 ARPC4-TTLL3;TTLL3 chr3:9871079 5'GT 9871079 Upstream 50bp 8003 chr5 96237258 96237258 1 + T G BLCA 96237259 + 96237239 96237279 41 CAAAGAGATGATGACTACATGGACTCTCCAGAAAGGAATCC CAAAGAGATGATGACTACAGGGACTCTCCAGAAAGGAATCC < 41bp 0.766059151321539 0.435294012334501 NA NA prediction 0.532118302643078 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96237259 chr5:96237258 nonsynonymous SNV 0.952 4 20 hm7G_associated_SNPs_8321 0 0 0 0 1 ERAP2 chr5:96237210 3'AG 96237210 Downstream 49bp 8004 chr2 37458885 37458885 1 + T G rs530133541 37458886 + 37458866 37458906 41 GTCAGGTTTGGGGCCGTTGTGTGCCGTGGCGCGCGCAGGTA GTCAGGTTTGGGGCCGTTGGGTGCCGTGGCGCGCGCAGGTA < 41bp 0.818344462607096 0.552325484685131 NA NA prediction 0.53203795584393 Functional Loss - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37458886 chr2:37458885 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_8322 0 0 1 0 1 NDUFAF7 chr2:37458903 5'GT 37458903 Upstream 19bp 8005 chr1 3672074 3672074 1 + T G SKCM 3672075 + 3672055 3672095 41 TGACAACAGCTCGGAGACCTGGAGAGGCACCCAGGACCTGT TGACAACAGCTCGGAGACCGGGAGAGGCACCCAGGACCTGT < 41bp 0.854214403123299 0.588283667218723 NA NA prediction 0.531861471809152 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672075 chr1:3672074 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_8324 0 0 0 0 2 CCDC27 chr1:3672021 3'AG 3672021 Downstream 54bp 8006 chr1 3672074 3672074 1 + T G SKCM 3672075 + 3672055 3672095 41 TGACAACAGCTCGGAGACCTGGAGAGGCACCCAGGACCTGT TGACAACAGCTCGGAGACCGGGAGAGGCACCCAGGACCTGT < 41bp 0.854214403123299 0.588283667218723 NA NA prediction 0.531861471809152 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672075 chr1:3672074 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_8324 0 0 0 0 2 CCDC27 chr1:3672131 5'GT 3672131 Upstream 58bp 8007 chr17 42427851 42427851 1 + T G BRCA 42427852 + 42427832 42427872 41 TGCACTGCTGTCCGCACGGTGCCTTCTGCGACCTGGTTCAC TGCACTGCTGTCCGCACGGGGCCTTCTGCGACCTGGTTCAC < 41bp 0.765914587163552 0.41967237996101 NA NA prediction 0.531829174327104 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42427852 chr17:42427851 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_8325 0 0 1 0 2 GRN chr17:42427810 3'AG 42427810 Downstream 42bp 8008 chr17 42427851 42427851 1 + T G BRCA 42427852 + 42427832 42427872 41 TGCACTGCTGTCCGCACGGTGCCTTCTGCGACCTGGTTCAC TGCACTGCTGTCCGCACGGGGCCTTCTGCGACCTGGTTCAC < 41bp 0.765914587163552 0.41967237996101 NA NA prediction 0.531829174327104 Functional Loss - GRN ENSG00000030582 CDS Human protein_coding chr17:42427852 chr17:42427851 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_8325 0 0 1 0 2 GRN chr17:42427945 5'GT 42427945 Upstream 95bp 8009 chr8 144102376 144102376 1 + T G LGG 144102377 + 144102357 144102397 41 ATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTCTGGG ATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTCTGGG < 41bp 0.864766251035527 0.598973081881172 NA NA prediction 0.53158633830871 Functional Loss - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102377 chr8:144102376 nonsynonymous SNV 0.352 2 20 hm7G_associated_SNPs_8327 0 0 1 6 3 LY6E chr8:144102300 3'AG 144102300 Downstream 77bp 8010 chr8 144102376 144102376 1 + T G LGG 144102377 + 144102357 144102397 41 ATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTCTGGG ATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTCTGGG < 41bp 0.864766251035527 0.598973081881172 NA NA prediction 0.53158633830871 Functional Loss - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102377 chr8:144102376 nonsynonymous SNV 0.352 2 20 hm7G_associated_SNPs_8327 0 0 1 6 3 LY6E chr8:144102305 3'AG 144102305 Downstream 72bp 8011 chr8 144102376 144102376 1 + T G LGG 144102377 + 144102357 144102397 41 ATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTCTGGG ATGAAGATCTTCTTGCCAGGGCTGCTGGCTGCCCTTCTGGG < 41bp 0.864766251035527 0.598973081881172 NA NA prediction 0.53158633830871 Functional Loss - LY6E ENSG00000160932 CDS Human protein_coding chr8:144102377 chr8:144102376 nonsynonymous SNV 0.352 2 20 hm7G_associated_SNPs_8327 0 0 1 6 3 LY6E chr8:144102408 5'GT 144102408 Upstream 33bp 8012 chr17 9480081 9480081 1 + T G LUSC 9480082 + 9480062 9480102 41 ACGCCGTGATCGGCTTCAATGGTGAGGCCTCCAGCATCTTT ACGCCGTGATCGGCTTCAAGGGTGAGGCCTCCAGCATCTTT < 41bp 0.765790214070721 0.49913415446214 NA NA prediction 0.531580428141443 Functional Loss - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9480082 chr17:9480081 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_8328 0 0 0 0 1 CFAP52 chr17:9480082 5'GT 9480082 Upstream 2bp 8013 chr2 70162534 70162534 1 + T G rs2228183 70162535 + 70162515 70162555 41 TGAAGGGGCTGGTGCCACTTGGACCCGAATCAAGTCGACAC TGAAGGGGCTGGTGCCACTGGGACCCGAATCAAGTCGACAC < 41bp 0.861705027664492 0.595936471959502 NA NA prediction 0.53153711140998 Functional Loss - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70162535 chr2:70162534 synonymous SNV . 0 20 hm7G_associated_SNPs_8329 0 0 0 0 2 MXD1 chr2:70162483 3'AG 70162483 Downstream 52bp 8014 chr2 70162534 70162534 1 + T G rs2228183 70162535 + 70162515 70162555 41 TGAAGGGGCTGGTGCCACTTGGACCCGAATCAAGTCGACAC TGAAGGGGCTGGTGCCACTGGGACCCGAATCAAGTCGACAC < 41bp 0.861705027664492 0.595936471959502 NA NA prediction 0.53153711140998 Functional Loss - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70162535 chr2:70162534 synonymous SNV . 0 20 hm7G_associated_SNPs_8329 0 0 0 0 2 MXD1 chr2:70162597 5'GT 70162597 Upstream 64bp 8015 chr7 129756310 129756310 1 + T G CESC 129756311 + 129756291 129756331 41 GACCTCCACCAGCACGAAGTGGACATCGTTGTGTGGCAGAT GACCTCCACCAGCACGAAGGGGACATCGTTGTGTGGCAGAT < 41bp 0.857695119551588 0.591946428030358 NA NA prediction 0.531497383042458 Functional Loss - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129756311 chr7:129756310 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8330 0 0 1 0 1 KLHDC10 chr7:129756285 3'AG 129756285 Downstream 26bp 8016 chr20 25257283 25257283 1 + T G COAD 25257284 + 25257264 25257304 41 AACCCGTTTTGTGGCCAGGTGGTGCTGGCCATGCCCTACGA AACCCGTTTTGTGGCCAGGGGGTGCTGGCCATGCCCTACGA < 41bp 0.867862686929256 0.602282828428852 NA NA prediction 0.53115971700081 Functional Loss - PYGB ENSG00000100994 CDS Human protein_coding chr20:25257284 chr20:25257283 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_8334 0 0 1 0 1 PYGB chr20:25257282 3'AG 25257282 Downstream 2bp 8017 chr16 25228530 25228530 1 + T G LUSC 25228531 + 25228511 25228551 41 TACGGCAGATAGCCATGTGTGAGCCTGAATTTGGCAATGAC TACGGCAGATAGCCATGTGGGAGCCTGAATTTGGCAATGAC < 41bp 0.765578505230693 0.447871226439786 NA NA prediction 0.531157010461386 Functional Loss - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25228531 chr16:25228530 nonsynonymous SNV 0.156 2 20 hm7G_associated_SNPs_8335 0 0 0 0 1 AQP8 chr16:25228519 3'AG 25228519 Downstream 12bp 8018 chr16 2752415 2752415 1 + T G UCEC 2752416 + 2752396 2752436 41 CAAGCCGAGTTCCTCTGTGTGGTGTCCAAGGAGCTGCACAA CAAGCCGAGTTCCTCTGTGGGGTGTCCAAGGAGCTGCACAA < 41bp 0.863025869890397 0.59760558598815 NA NA prediction 0.530840567804494 Functional Loss - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2752416 chr16:2752415 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_8338 0 0 1 0 2 KCTD5 chr16:2752354 3'AG 2752354 Downstream 62bp 8019 chr16 2752415 2752415 1 + T G UCEC 2752416 + 2752396 2752436 41 CAAGCCGAGTTCCTCTGTGTGGTGTCCAAGGAGCTGCACAA CAAGCCGAGTTCCTCTGTGGGGTGTCCAAGGAGCTGCACAA < 41bp 0.863025869890397 0.59760558598815 NA NA prediction 0.530840567804494 Functional Loss - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2752416 chr16:2752415 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_8338 0 0 1 0 2 KCTD5 chr16:2752479 5'GT 2752479 Upstream 65bp 8020 chr11 113103996 113103996 1 + T G rs584427 113103997 + 113103977 113104017 41 AAGCTGAGTGGAGAGCAGTTGGTGAAGAAGTATGGCATTCC AAGCTGAGTGGAGAGCAGTGGGTGAAGAAGTATGGCATTCC < 41bp 0.76539695129828 0.444556873467182 NA NA prediction 0.530793902596559 Functional Loss - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113103997 chr11:113103996 synonymous SNV . 0 20 hm7G_associated_SNPs_8340 0 0 0 0 1 NCAM1 chr11:113104039 5'GT 113104039 Upstream 44bp 8021 chr11 1097183 1097183 1 + T G KIRP 1097184 + 1097164 1097204 41 ATGGTGTGTCGGCCACAGGTGCAGGTGAACAGGCAGGCGGT ATGGTGTGTCGGCCACAGGGGCAGGTGAACAGGCAGGCGGT < 41bp 0.850284677152863 0.58495582953313 NA NA prediction 0.530657695239466 Functional Loss - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1097184 chr11:1097183 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_8341 0 0 0 0 1 MUC2 chr11:1097182 3'AG 1097182 Downstream 2bp 8022 chr19 17922410 17922410 1 + T G BLCA 17922411 + 17922391 17922431 41 ACAGTGGCAGGAGACAAGGTGCGCCAACGCCAGCTTCGTGC ACAGTGGCAGGAGACAAGGGGCGCCAACGCCAGCTTCGTGC < 41bp 0.861421712225086 0.596181121566427 NA NA prediction 0.530481181317318 Functional Loss - B3GNT3 ENSG00000179913 CDS Human protein_coding chr19:17922411 chr19:17922410 nonsynonymous SNV 0.004 4 20 hm7G_associated_SNPs_8342 0 0 0 0 1 B3GNT3 chr19:17922380 3'AG 17922380 Downstream 31bp 8023 chr20 4680506 4680506 1 + T G UCS 4680507 + 4680487 4680527 41 GCGCGTGGTTGAGCAGATGTGTATCACCCAGTACGAGAGGG GCGCGTGGTTGAGCAGATGGGTATCACCCAGTACGAGAGGG < 41bp 0.849866196804982 0.584640214805071 NA NA prediction 0.530451963999823 Functional Loss - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680507 chr20:4680506 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_8343 0 0 1 0 1 PRNP chr20:4680516 5'GT 4680516 Upstream 11bp 8024 chr5 161116152 161116152 1 + T G SKCM 161116153 + 161116133 161116173 41 TCTTCAGAATAATGCAGAATGGAACCATTTTATACACCATG TCTTCAGAATAATGCAGAAGGGAACCATTTTATACACCATG < 41bp 0.765156495715531 0.454244992163107 NA NA prediction 0.530312991431062 Functional Loss - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116153 chr5:161116152 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8344 0 0 0 0 1 GABRA6 chr5:161116175 5'GT 161116175 Upstream 24bp 8025 chr20 3003388 3003388 1 + T G SKCM 3003389 + 3003369 3003409 41 ATTGATGCCATGCTGGACATGATGCATACAGAACGGAAGGT ATTGATGCCATGCTGGACAGGATGCATACAGAACGGAAGGT < 41bp 0.862275158594286 0.597219277547437 NA NA prediction 0.530111762093697 Functional Loss - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3003389 chr20:3003388 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_8345 0 0 1 0 2 PTPRA chr20:3003335 3'AG 3003335 Downstream 54bp 8026 chr20 3003388 3003388 1 + T G SKCM 3003389 + 3003369 3003409 41 ATTGATGCCATGCTGGACATGATGCATACAGAACGGAAGGT ATTGATGCCATGCTGGACAGGATGCATACAGAACGGAAGGT < 41bp 0.862275158594286 0.597219277547437 NA NA prediction 0.530111762093697 Functional Loss - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3003389 chr20:3003388 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_8345 0 0 1 0 2 PTPRA chr20:3003470 5'GT 3003470 Upstream 83bp 8027 chr20 30602764 30602764 1 + T G LUAD 30602765 + 30602745 30602785 41 GGCCGGGCGCCGGGCAGCCTGTAGGAGCAGCGTGAGCCGCC GGCCGGGCGCCGGGCAGCCGGTAGGAGCAGCGTGAGCCGCC < 41bp 0.86440844646146 0.599390466265896 NA NA prediction 0.530035960391129 Functional Loss - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602765 chr20:30602764 nonsynonymous SNV 0.034 0 20 hm7G_associated_SNPs_8346 0 0 0 0 1 CCM2L chr20:30602707 3'AG 30602707 Downstream 58bp 8028 chr17 2222138 2222138 1 + T G LAML 2222139 + 2222119 2222159 41 GGAATTCCTGCTTATATTGTGGTGCCCCAGACAGCTCCAGA GGAATTCCTGCTTATATTGGGGTGCCCCAGACAGCTCCAGA < 41bp 0.859569078401423 0.594625048187515 NA NA prediction 0.529888060427816 Functional Loss - SRR ENSG00000167720 CDS Human protein_coding chr17:2222139 chr17:2222138 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8347 0 0 0 0 2 SRR chr17:2222120 3'AG 2222120 Downstream 19bp 8029 chr17 2222138 2222138 1 + T G LAML 2222139 + 2222119 2222159 41 GGAATTCCTGCTTATATTGTGGTGCCCCAGACAGCTCCAGA GGAATTCCTGCTTATATTGGGGTGCCCCAGACAGCTCCAGA < 41bp 0.859569078401423 0.594625048187515 NA NA prediction 0.529888060427816 Functional Loss - SRR ENSG00000167720 CDS Human protein_coding chr17:2222139 chr17:2222138 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8347 0 0 0 0 2 SRR chr17:2222223 5'GT 2222223 Upstream 86bp 8030 chr14 75904727 75904727 1 + T G BLCA 75904728 + 75904708 75904748 41 GCCCTGACTGTGGAGGAGCTGAAATACGCTGACATCCGCAA GCCCTGACTGTGGAGGAGCGGAAATACGCTGACATCCGCAA < 41bp 0.869509480899609 0.604829217586068 NA NA prediction 0.529360526627083 Functional Loss - JDP2 ENSG00000140044 CDS Human protein_coding chr14:75904728 chr14:75904727 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8352 0 0 1 0 1 JDP2 chr14:75904824 5'GT 75904824 Upstream 98bp 8031 chr2 234891740 234891740 1 + T G SARC 234891741 + 234891721 234891761 41 TTCCTCTTTGCGGTGTGGATGGTGGCCTTTGGCGTGGCCAG TTCCTCTTTGCGGTGTGGAGGGTGGCCTTTGGCGTGGCCAG < 41bp 0.856793466730407 0.592201365520605 NA NA prediction 0.529184202419604 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234891741 chr2:234891740 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8353 0 0 0 0 1 TRPM8 chr2:234891697 3'AG 234891697 Downstream 44bp 8032 chr5 96073567 96073567 1 + T G SKCM 96073568 + 96073548 96073588 41 TCCAGTCAGGCATGGATGCTGCTTTGGATGACTTAATAGAT TCCAGTCAGGCATGGATGCGGCTTTGGATGACTTAATAGAT < 41bp 0.77220455516876 0.507663265837464 NA NA prediction 0.529082578662591 Functional Loss - CAST ENSG00000153113 CDS Human protein_coding chr5:96073568 chr5:96073567 synonymous SNV . 0 20 hm7G_associated_SNPs_8354 0 0 1 0 2 CAST chr5:96073553 3'AG 96073553 Downstream 15bp 8033 chr5 96073567 96073567 1 + T G SKCM 96073568 + 96073548 96073588 41 TCCAGTCAGGCATGGATGCTGCTTTGGATGACTTAATAGAT TCCAGTCAGGCATGGATGCGGCTTTGGATGACTTAATAGAT < 41bp 0.77220455516876 0.507663265837464 NA NA prediction 0.529082578662591 Functional Loss - CAST ENSG00000153113 CDS Human protein_coding chr5:96073568 chr5:96073567 synonymous SNV . 0 20 hm7G_associated_SNPs_8354 0 0 1 0 2 CAST chr5:96073651 5'GT 96073651 Upstream 85bp 8034 chr19 42857101 42857101 1 + T G PAAD 42857102 + 42857082 42857122 41 GCTTGGAGGACTGTGGCCATGGTGTGTGCAGTGGCCCCCCG GCTTGGAGGACTGTGGCCAGGGTGTGTGCAGTGGCCCCCCG < 41bp 0.764504785422827 0.419528655623236 NA NA prediction 0.529009570845653 Functional Loss - MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42857102 chr19:42857101 nonsynonymous SNV 0.945 2 20 hm7G_associated_SNPs_8355 0 0 1 0 1 MEGF8 chr19:42857080 3'AG 42857080 Downstream 22bp 8035 chr16 23669846 23669846 1 + T G LUAD 23669847 + 23669827 23669867 41 GACCATTGTGATGAATGACTGTATTATCCGAGGGGATCTGG GACCATTGTGATGAATGACGGTATTATCCGAGGGGATCTGG < 41bp 0.839664444944975 0.575161483750968 NA NA prediction 0.529005922388015 Functional Loss - DCTN5 ENSG00000166847 CDS Human protein_coding chr16:23669847 chr16:23669846 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8356 0 0 1 0 1 DCTN5 chr16:23669828 3'AG 23669828 Downstream 19bp 8036 chr19 19359601 19359601 1 + T G SKCM 19359602 + 19359582 19359622 41 TGCCACTGTAAGGTACCAGTGCAATGAAGGATTTGCCCAGC TGCCACTGTAAGGTACCAGGGCAATGAAGGATTTGCCCAGC < 41bp 0.871563598937835 0.607065991533095 NA NA prediction 0.52899521480948 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19359602 chr19:19359601 nonsynonymous SNV 0.974 2 20 hm7G_associated_SNPs_8357 0 0 0 0 2 NCAN chr19:19359509 3'AG 19359509 Downstream 93bp 8037 chr19 19359601 19359601 1 + T G SKCM 19359602 + 19359582 19359622 41 TGCCACTGTAAGGTACCAGTGCAATGAAGGATTTGCCCAGC TGCCACTGTAAGGTACCAGGGCAATGAAGGATTTGCCCAGC < 41bp 0.871563598937835 0.607065991533095 NA NA prediction 0.52899521480948 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19359602 chr19:19359601 nonsynonymous SNV 0.974 2 20 hm7G_associated_SNPs_8357 0 0 0 0 2 NCAN chr19:19359691 5'GT 19359691 Upstream 91bp 8038 chr2 148677883 148677883 1 + T G BLCA 148677884 + 148677864 148677904 41 TGGCCTTAAAATTTGAGGCTGGCAAGTCTGCAGGCGATACC TGGCCTTAAAATTTGAGGCGGGCAAGTCTGCAGGCGATACC < 41bp 0.851440553991174 0.586981920292212 NA NA prediction 0.528917267397924 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148677884 chr2:148677883 synonymous SNV . 0 20 hm7G_associated_SNPs_8359 0 0 0 0 2 ACVR2A chr2:148677799 3'AG 148677799 Downstream 85bp 8039 chr2 148677883 148677883 1 + T G BLCA 148677884 + 148677864 148677904 41 TGGCCTTAAAATTTGAGGCTGGCAAGTCTGCAGGCGATACC TGGCCTTAAAATTTGAGGCGGGCAAGTCTGCAGGCGATACC < 41bp 0.851440553991174 0.586981920292212 NA NA prediction 0.528917267397924 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148677884 chr2:148677883 synonymous SNV . 0 20 hm7G_associated_SNPs_8359 0 0 0 0 2 ACVR2A chr2:148677913 5'GT 148677913 Upstream 31bp 8040 chr13 27829471 27829471 1 + T G UCEC 27829472 + 27829452 27829492 41 CCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAAG CCCAGCATGCTGTTGGCATGGTTGTAAACAAACAAGTTAAG < 41bp 0.845684698629896 0.581261817017364 NA NA prediction 0.528845763225064 Functional Loss - RPL21 ENSG00000122026 CDS Human protein_coding chr13:27829472 chr13:27829471 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8360 0 0 1 0 2 RPL21 chr13:27829379 3'AG 27829379 Downstream 93bp 8041 chr13 27829471 27829471 1 + T G UCEC 27829472 + 27829452 27829492 41 CCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAAG CCCAGCATGCTGTTGGCATGGTTGTAAACAAACAAGTTAAG < 41bp 0.845684698629896 0.581261817017364 NA NA prediction 0.528845763225064 Functional Loss - RPL21 ENSG00000122026 CDS Human protein_coding chr13:27829472 chr13:27829471 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8360 0 0 1 0 2 RPL21 chr13:27829491 5'GT 27829491 Upstream 21bp 8042 chr22 18898421 18898421 1 + T G rs185483691 18898422 + 18898402 18898442 41 CGGTGGAGCACCGGATCCGTGAGGAGCAGCGGGCGATGGAC CGGTGGAGCACCGGATCCGGGAGGAGCAGCGGGCGATGGAC < 41bp 0.870175951006929 0.605761024003545 NA NA prediction 0.528829854006767 Functional Loss - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18898422 chr22:18898421 synonymous SNV . 0 20 hm7G_associated_SNPs_8362 0 0 0 1 1 DGCR6 chr22:18898401 3'AG 18898401 Downstream 21bp 8043 chr9 5231628 5231628 1 + T G rs114667216 5231629 + 5231609 5231649 41 GGGGATGTGGTCCCCGATTTGGAAAACACTTGCTGTCATAT GGGGATGTGGTCCCCGATTGGGAAAACACTTGCTGTCATAT < 41bp 0.764282373619675 0.450848623958946 NA NA prediction 0.52856474723935 Functional Loss - INSL4 ENSG00000120211 CDS Human protein_coding chr9:5231629 chr9:5231628 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_8366 0 0 0 0 1 INSL4 chr9:5231719 5'GT 5231719 Upstream 92bp 8044 chr9 117068960 117068960 1 + T G UCS 117068961 + 117068941 117068981 41 ATGGACTGTGAGCAGAAGATGGTGGATGGTGAGAAGGCTTC ATGGACTGTGAGCAGAAGAGGGTGGATGGTGAGAAGGCTTC < 41bp 0.764282287773752 0.442072425666774 NA NA prediction 0.528564575547503 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117068961 chr9:117068960 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8367 0 0 1 0 1 COL27A1 chr9:117068968 5'GT 117068968 Upstream 9bp 8045 chr20 18608865 18608865 1 + T G LUSC 18608866 + 18608846 18608886 41 CTCCCGGCACTGCTACCTCTGACCCAAAGCAGGTAAGCCTG CTCCCGGCACTGCTACCTCGGACCCAAAGCAGGTAAGCCTG < 41bp 0.868110057577685 0.603926867747056 NA NA prediction 0.528366379661259 Functional Loss - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18608866 chr20:18608865 synonymous SNV . 0 20 hm7G_associated_SNPs_8368 0 0 1 0 2 DTD1 chr20:18608771 3'AG 18608771 Downstream 95bp 8046 chr20 18608865 18608865 1 + T G LUSC 18608866 + 18608846 18608886 41 CTCCCGGCACTGCTACCTCTGACCCAAAGCAGGTAAGCCTG CTCCCGGCACTGCTACCTCGGACCCAAAGCAGGTAAGCCTG < 41bp 0.868110057577685 0.603926867747056 NA NA prediction 0.528366379661259 Functional Loss - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18608866 chr20:18608865 synonymous SNV . 0 20 hm7G_associated_SNPs_8368 0 0 1 0 2 DTD1 chr20:18608877 5'GT 18608877 Upstream 13bp 8047 chr1 150237022 150237022 1 + T G COAD 150237023 + 150237003 150237043 41 CTGGAAAACCGAAAGAGTGTGGTCTTCACCTCAGCACAAGC CTGGAAAACCGAAAGAGTGGGGTCTTCACCTCAGCACAAGC < 41bp 0.844805742436131 0.580832854872691 NA NA prediction 0.527945775126879 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150237023 chr1:150237022 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_8372 0 0 0 0 1 CA14 chr1:150236993 3'AG 150236993 Downstream 30bp 8048 chr16 70349882 70349882 1 + T G BLCA 70349883 + 70349863 70349903 41 TCCTGACAGAGGACAGAGCTGCCCAGTCCTTACTCAACAAG TCCTGACAGAGGACAGAGCGGCCCAGTCCTTACTCAACAAG < 41bp 0.76397099650316 0.428808300305029 NA NA prediction 0.52794199300632 Functional Loss - DDX19B ENSG00000157349;ENSG00000260537 CDS Human other chr16:70349883 chr16:70349882 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_8373 0 0 0 0 1 DDX19B chr16:70349872 3'AG 70349872 Downstream 11bp 8049 chrX 38271179 38271179 1 + T G STAD 38271180 + 38271160 38271200 41 CCCAGAAAGCCAGAAGAAGTGGATGATGAAGTCTTTTATTC CCCAGAAAGCCAGAAGAAGGGGATGATGAAGTCTTTTATTC < 41bp 0.849275050483803 0.585343017354365 NA NA prediction 0.527864066258876 Functional Loss - OTC ENSG00000036473 CDS Human protein_coding chrX:38271180 chrX:38271179 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_8374 0 0 0 0 2 OTC chrX:38271115 3'AG 38271115 Downstream 65bp 8050 chrX 38271179 38271179 1 + T G STAD 38271180 + 38271160 38271200 41 CCCAGAAAGCCAGAAGAAGTGGATGATGAAGTCTTTTATTC CCCAGAAAGCCAGAAGAAGGGGATGATGAAGTCTTTTATTC < 41bp 0.849275050483803 0.585343017354365 NA NA prediction 0.527864066258876 Functional Loss - OTC ENSG00000036473 CDS Human protein_coding chrX:38271180 chrX:38271179 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_8374 0 0 0 0 2 OTC chrX:38271252 5'GT 38271252 Upstream 74bp 8051 chr2 153504371 153504371 1 + T G rs182064759 153504372 + 153504352 153504392 41 GAAGCGTCAGGCGGCGCTTTGATGATCAGAACTTGCGTTCT GAAGCGTCAGGCGGCGCTTGGATGATCAGAACTTGCGTTCT < 41bp 0.814647914912355 0.550724099733394 NA NA prediction 0.527847630357923 Functional Loss - FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153504372 chr2:153504371 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_8375 0 0 1 0 1 FMNL2 chr2:153504310 3'AG 153504310 Downstream 62bp 8052 chr1 90487847 90487847 1 + T G OV 90487848 + 90487828 90487868 41 AAAGAGAGAGTGTCTTGACTGCTACAAGCATTTTAAATAAT AAAGAGAGAGTGTCTTGACGGCTACAAGCATTTTAAATAAT < 41bp 0.831074701865181 0.567153813757251 NA NA prediction 0.527841776215859 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90487848 chr1:90487847 synonymous SNV . 0 20 hm7G_associated_SNPs_8376 0 0 1 0 2 ZNF326 chr1:90487809 3'AG 90487809 Downstream 39bp 8053 chr1 90487847 90487847 1 + T G OV 90487848 + 90487828 90487868 41 AAAGAGAGAGTGTCTTGACTGCTACAAGCATTTTAAATAAT AAAGAGAGAGTGTCTTGACGGCTACAAGCATTTTAAATAAT < 41bp 0.831074701865181 0.567153813757251 NA NA prediction 0.527841776215859 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90487848 chr1:90487847 synonymous SNV . 0 20 hm7G_associated_SNPs_8376 0 0 1 0 2 ZNF326 chr1:90487904 5'GT 90487904 Upstream 58bp 8054 chr17 7840511 7840511 1 + T G CHOL 7840512 + 7840492 7840532 41 GCCTGGAACAAAGCCTTTCTGAGGCCATGGAGGCCCTGAAT GCCTGGAACAAAGCCTTTCGGAGGCCATGGAGGCCCTGAAT < 41bp 0.870727274125505 0.606847856986392 NA NA prediction 0.527758834278226 Functional Loss - CNTROB ENSG00000170037 CDS Human protein_coding chr17:7840512 chr17:7840511 synonymous SNV . 0 20 hm7G_associated_SNPs_8377 0 0 1 0 1 CNTROB chr17:7840580 5'GT 7840580 Upstream 70bp 8055 chr1 212251574 212251574 1 + T G PAAD 212251575 + 212251555 212251595 41 ATTCTCAAGAGGTCACGTCTGTGTGCTGGTGTCCATCTGAC ATTCTCAAGAGGTCACGTCGGTGTGCTGGTGTCCATCTGAC < 41bp 0.763800551416384 0.44319912610068 NA NA prediction 0.527601102832768 Functional Loss - DTL ENSG00000143476 CDS Human protein_coding chr1:212251575 chr1:212251574 synonymous SNV . 0 20 hm7G_associated_SNPs_8378 0 0 1 0 2 DTL chr1:212251515 3'AG 212251515 Downstream 60bp 8056 chr1 212251574 212251574 1 + T G PAAD 212251575 + 212251555 212251595 41 ATTCTCAAGAGGTCACGTCTGTGTGCTGGTGTCCATCTGAC ATTCTCAAGAGGTCACGTCGGTGTGCTGGTGTCCATCTGAC < 41bp 0.763800551416384 0.44319912610068 NA NA prediction 0.527601102832768 Functional Loss - DTL ENSG00000143476 CDS Human protein_coding chr1:212251575 chr1:212251574 synonymous SNV . 0 20 hm7G_associated_SNPs_8378 0 0 1 0 2 DTL chr1:212251604 5'GT 212251604 Upstream 31bp 8057 chr15 48537012 48537012 1 + T G UCEC 48537013 + 48536993 48537033 41 CATCATTTCTGGGATGAACTGCAATGGTTCAGCAGCATGTG CATCATTTCTGGGATGAACGGCAATGGTTCAGCAGCATGTG < 41bp 0.848556350376059 0.584849813247187 NA NA prediction 0.527413074257744 Functional Loss - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48537013 chr15:48537012 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8382 0 0 0 0 2 SLC12A1 chr15:48536950 3'AG 48536950 Downstream 63bp 8058 chr15 48537012 48537012 1 + T G UCEC 48537013 + 48536993 48537033 41 CATCATTTCTGGGATGAACTGCAATGGTTCAGCAGCATGTG CATCATTTCTGGGATGAACGGCAATGGTTCAGCAGCATGTG < 41bp 0.848556350376059 0.584849813247187 NA NA prediction 0.527413074257744 Functional Loss - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48537013 chr15:48537012 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8382 0 0 0 0 2 SLC12A1 chr15:48537101 5'GT 48537101 Upstream 90bp 8059 chr4 99355170 99355170 1 + T G KIRC 99355171 + 99355151 99355191 41 AACATGTAATAATGCAGAATGAAGCTCTTGTTGCTTTGGCA AACATGTAATAATGCAGAAGGAAGCTCTTGTTGCTTTGGCA < 41bp 0.763701963041698 0.446852811807565 NA NA prediction 0.527403926083396 Functional Loss - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99355171 chr4:99355170 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8383 0 0 0 0 2 RAP1GDS1 chr4:99355087 3'AG 99355087 Downstream 84bp 8060 chr4 99355170 99355170 1 + T G KIRC 99355171 + 99355151 99355191 41 AACATGTAATAATGCAGAATGAAGCTCTTGTTGCTTTGGCA AACATGTAATAATGCAGAAGGAAGCTCTTGTTGCTTTGGCA < 41bp 0.763701963041698 0.446852811807565 NA NA prediction 0.527403926083396 Functional Loss - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99355171 chr4:99355170 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8383 0 0 0 0 2 RAP1GDS1 chr4:99355213 5'GT 99355213 Upstream 44bp 8061 chr5 173337594 173337594 1 + T G SKCM 173337595 + 173337575 173337615 41 ACATAATGAGAGCTGAAAATGATACCATTAAAGGTAAGTTT ACATAATGAGAGCTGAAAAGGATACCATTAAAGGTAAGTTT < 41bp 0.763694718728663 0.460082449838204 NA NA prediction 0.527389437457326 Functional Loss - CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173337595 chr5:173337594 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8384 0 0 1 0 2 CPEB4 chr5:173337526 3'AG 173337526 Downstream 69bp 8062 chr5 173337594 173337594 1 + T G SKCM 173337595 + 173337575 173337615 41 ACATAATGAGAGCTGAAAATGATACCATTAAAGGTAAGTTT ACATAATGAGAGCTGAAAAGGATACCATTAAAGGTAAGTTT < 41bp 0.763694718728663 0.460082449838204 NA NA prediction 0.527389437457326 Functional Loss - CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173337595 chr5:173337594 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8384 0 0 1 0 2 CPEB4 chr5:173337607 5'GT 173337607 Upstream 14bp 8063 chr5 7873629 7873629 1 + T G UCEC 7873630 + 7873610 7873650 41 TCTTTGCTCACCTGCGGTATGGGTTACTGGGTAATGGACTC TCTTTGCTCACCTGCGGTAGGGGTTACTGGGTAATGGACTC < 41bp 0.848459488191332 0.584805181083429 NA NA prediction 0.527308614215806 Functional Loss - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873630 chr5:7873629 stopgain 0.993 1 20 hm7G_associated_SNPs_8385 0 0 1 0 1 MTRR chr5:7873639 5'GT 7873639 Upstream 11bp 8064 chr15 72699075 72699075 1 + T G HNSC 72699076 + 72699056 72699096 41 TTGGATCTGAAGGTATCCATGCTCAGCTTCATCTCAGGTAC TTGGATCTGAAGGTATCCAGGCTCAGCTTCATCTCAGGTAC < 41bp 0.856571881460529 0.592924313525159 NA NA prediction 0.527295135870741 Functional Loss - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72699076 chr15:72699075 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_8386 0 0 0 2 1 TMEM202 chr15:72699092 5'GT 72699092 Upstream 18bp 8065 chr7 142568043 142568043 1 + T G KIRC 142568044 + 142568024 142568064 41 GGATTACATCTACTTATGTTGGACACTTGGCAGAAGGACCG GGATTACATCTACTTATGTGGGACACTTGGCAGAAGGACCG < 41bp 0.763604068398697 0.419552272145964 NA NA prediction 0.527208136797393 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142568044 chr7:142568043 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8387 0 0 0 0 1 EPHB6 chr7:142567967 3'AG 142567967 Downstream 77bp 8066 chr2 238742762 238742762 1 + T G UCEC 238742763 + 238742743 238742783 41 AGATCATAAAGAGACTGGCTGAACTGCATCCAGAAGTCAGC AGATCATAAAGAGACTGGCGGAACTGCATCCAGAAGTCAGC < 41bp 0.824072746599212 0.560512227385085 NA NA prediction 0.527121038428255 Functional Loss - RBM44 ENSG00000177483 CDS Human protein_coding chr2:238742763 chr2:238742762 synonymous SNV . 0 20 hm7G_associated_SNPs_8389 0 0 0 0 1 RBM44 chr2:238742785 5'GT 238742785 Upstream 24bp 8067 chr15 44094002 44094002 1 + T G PRAD 44094003 + 44093983 44094023 41 GCTTATTGCCCTAACCAACTGATGCGTGCTTTCTCAAATAT GCTTATTGCCCTAACCAACGGATGCGTGCTTTCTCAAATAT < 41bp 0.816668159462441 0.553132672075526 NA NA prediction 0.527070974773828 Functional Loss - HYPK ENSG00000140264;ENSG00000242028 CDS Human other chr15:44094003 chr15:44094002 stoploss 0.938 0 20 hm7G_associated_SNPs_8390 0 0 1 1 1 HYPK chr15:44093909 3'AG 44093909 Downstream 94bp 8068 chr2 182783594 182783594 1 + T G KIRC 182783595 + 182783575 182783615 41 ACCATGGTTTATCATCATATGACTGAGGAGGAGAGGTAAAA ACCATGGTTTATCATCATAGGACTGAGGAGGAGAGGTAAAA < 41bp 0.846471308522699 0.58295185419051 NA NA prediction 0.527038908664377 Functional Loss - SSFA2 ENSG00000138434 CDS Human protein_coding chr2:182783595 chr2:182783594 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8391 0 0 1 2 1 SSFA2 chr2:182783609 5'GT 182783609 Upstream 16bp 8069 chr1 90470792 90470792 1 + T G LUSC 90470793 + 90470773 90470813 41 ACAATCACAGTGGTGGTGGTGGGGGTAGCAGGTAAATTGCT ACAATCACAGTGGTGGTGGGGGGGGTAGCAGGTAAATTGCT < 41bp 0.836806484640357 0.573409916063029 NA NA prediction 0.526793137154655 Functional Loss - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90470793 chr1:90470792 synonymous SNV . 0 20 hm7G_associated_SNPs_8393 0 0 1 0 1 ZNF326 chr1:90470803 5'GT 90470803 Upstream 12bp 8070 chr4 26719599 26719599 1 + T G COAD 26719600 + 26719580 26719620 41 CATCTGTGTTGAGTCACTTTGCATTCAACAGTGCCTCGCCA CATCTGTGTTGAGTCACTTGGCATTCAACAGTGCCTCGCCA < 41bp 0.856518461370053 0.59320210766027 NA NA prediction 0.526632707419566 Functional Loss - TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26719600 chr4:26719599 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_8396 0 0 0 0 2 TBC1D19 chr4:26719555 3'AG 26719555 Downstream 45bp 8071 chr4 26719599 26719599 1 + T G COAD 26719600 + 26719580 26719620 41 CATCTGTGTTGAGTCACTTTGCATTCAACAGTGCCTCGCCA CATCTGTGTTGAGTCACTTGGCATTCAACAGTGCCTCGCCA < 41bp 0.856518461370053 0.59320210766027 NA NA prediction 0.526632707419566 Functional Loss - TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26719600 chr4:26719599 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_8396 0 0 0 0 2 TBC1D19 chr4:26719639 5'GT 26719639 Upstream 41bp 8072 chr7 141796153 141796153 1 + T G rs202121935 141796154 + 141796134 141796174 41 TGTGTCAGACCAGGTGACATGGGACATAGACAGTCAGTTCC TGTGTCAGACCAGGTGACAGGGGACATAGACAGTCAGTTCC < 41bp 0.763308257421914 0.438302108373316 NA NA prediction 0.526616514843828 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141796154 chr7:141796153 nonsynonymous SNV 0.413 4 20 hm7G_associated_SNPs_8397 0 0 0 0 2 MGAM chr7:141796131 3'AG 141796131 Downstream 23bp 8073 chr7 141796153 141796153 1 + T G rs202121935 141796154 + 141796134 141796174 41 TGTGTCAGACCAGGTGACATGGGACATAGACAGTCAGTTCC TGTGTCAGACCAGGTGACAGGGGACATAGACAGTCAGTTCC < 41bp 0.763308257421914 0.438302108373316 NA NA prediction 0.526616514843828 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141796154 chr7:141796153 nonsynonymous SNV 0.413 4 20 hm7G_associated_SNPs_8397 0 0 0 0 2 MGAM chr7:141796215 5'GT 141796215 Upstream 63bp 8074 chr16 1391445 1391445 1 + T G SKCM 1391446 + 1391426 1391466 41 TGCATCCAGGTCACCGAGGTGAAGAGCAGCACCCTGAACCC TGCATCCAGGTCACCGAGGGGAAGAGCAGCACCCTGAACCC < 41bp 0.763291574420651 0.424975620364103 NA NA prediction 0.526583148841302 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391446 chr16:1391445 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8398 0 0 0 0 1 BAIAP3 chr16:1391490 5'GT 1391490 Upstream 46bp 8075 chr3 107435501 107435501 1 + T G LUSC 107435502 + 107435482 107435522 41 AGCAAGATGTTGGTGAAACTGAAGATGATGAATCACCAGAG AGCAAGATGTTGGTGAAACGGAAGATGATGAATCACCAGAG < 41bp 0.763290187672788 0.449679607738003 NA NA prediction 0.526580375345577 Functional Loss - BBX ENSG00000114439 CDS Human protein_coding chr3:107435502 chr3:107435501 synonymous SNV . 0 20 hm7G_associated_SNPs_8399 0 0 1 0 1 BBX chr3:107435454 3'AG 107435454 Downstream 48bp 8076 chr3 128998669 128998669 1 + T G rs570415464 128998670 + 128998650 128998690 41 CCAGCAGCGGCTCCCGGAGTGGAGGGACCCTGATAAGTACT CCAGCAGCGGCTCCCGGAGGGGAGGGACCCTGATAAGTACT < 41bp 0.872984133766143 0.609782881726585 NA NA prediction 0.526402504079116 Functional Loss - HMCES ENSG00000183624 CDS Human protein_coding chr3:128998670 chr3:128998669 nonsynonymous SNV 0.019 4 20 hm7G_associated_SNPs_8404 0 0 1 0 1 HMCES chr3:128998758 5'GT 128998758 Upstream 90bp 8077 chr10 96073060 96073060 1 + T G LUSC 96073061 + 96073041 96073081 41 CAGACTCACAGAGTCACGGTGCATGGGGTCCCAGGGCCAGA CAGACTCACAGAGTCACGGGGCATGGGGTCCCAGGGCCAGA < 41bp 0.763158155344565 0.435574284206646 NA NA prediction 0.52631631068913 Functional Loss - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:96073061 chr10:96073060 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_8405 0 0 0 0 2 PLCE1 chr10:96073011 3'AG 96073011 Downstream 50bp 8078 chr10 96073060 96073060 1 + T G LUSC 96073061 + 96073041 96073081 41 CAGACTCACAGAGTCACGGTGCATGGGGTCCCAGGGCCAGA CAGACTCACAGAGTCACGGGGCATGGGGTCCCAGGGCCAGA < 41bp 0.763158155344565 0.435574284206646 NA NA prediction 0.52631631068913 Functional Loss - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:96073061 chr10:96073060 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_8405 0 0 0 0 2 PLCE1 chr10:96073139 5'GT 96073139 Upstream 80bp 8079 chr2 196578204 196578204 1 + T G UCEC 196578205 + 196578185 196578225 41 ACACAGAAGAATCAACTATTGGAAGAAAGCTTTCAGATCAC ACACAGAAGAATCAACTATGGGAAGAAAGCTTTCAGATCAC < 41bp 0.83439670066919 0.571327770232054 NA NA prediction 0.526137860874272 Functional Loss - SLC39A10 ENSG00000196950 CDS Human protein_coding chr2:196578205 chr2:196578204 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8408 0 0 1 0 2 SLC39A10 chr2:196578157 3'AG 196578157 Downstream 48bp 8080 chr2 196578204 196578204 1 + T G UCEC 196578205 + 196578185 196578225 41 ACACAGAAGAATCAACTATTGGAAGAAAGCTTTCAGATCAC ACACAGAAGAATCAACTATGGGAAGAAAGCTTTCAGATCAC < 41bp 0.83439670066919 0.571327770232054 NA NA prediction 0.526137860874272 Functional Loss - SLC39A10 ENSG00000196950 CDS Human protein_coding chr2:196578205 chr2:196578204 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8408 0 0 1 0 2 SLC39A10 chr2:196578277 5'GT 196578277 Upstream 74bp 8081 chr1 75602896 75602896 1 + T G COAD 75602897 + 75602877 75602917 41 CGGCTGCCCTCCTGGCAAGTGTGTGTGCAACAGTTGCGGCC CGGCTGCCCTCCTGGCAAGGGTGTGTGCAACAGTTGCGGCC < 41bp 0.763042826539327 0.429960803167283 NA NA prediction 0.526085653078654 Functional Loss - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75602897 chr1:75602896 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8409 0 0 0 0 1 LHX8 chr1:75602946 5'GT 75602946 Upstream 51bp 8082 chr5 96253260 96253260 1 + T G UCEC 96253261 + 96253241 96253281 41 ACCAAAAATATAAAATGGCTGGAGAAGAATCTTCCGACTCT ACCAAAAATATAAAATGGCGGGAGAAGAATCTTCCGACTCT < 41bp 0.821680192904682 0.55864847730789 NA NA prediction 0.526063431193585 Functional Loss - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96253261 chr5:96253260 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8410 0 0 0 0 1 ERAP2 chr5:96253166 3'AG 96253166 Downstream 95bp 8083 chr4 47538827 47538827 1 + T G LUSC 47538828 + 47538808 47538848 41 ATTGTTCAGTGCCGAGCCCTGAACATCGCCGAGGATCTGGG ATTGTTCAGTGCCGAGCCCGGAACATCGCCGAGGATCTGGG < 41bp 0.863893081557068 0.600950852951678 NA NA prediction 0.52588445721078 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47538828 chr4:47538827 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_8412 0 0 0 0 1 ATP10D chr4:47538748 3'AG 47538748 Downstream 80bp 8084 chr15 93043682 93043682 1 + T G rs543669748 93043683 + 93043663 93043703 41 GGTTATCCAAGTCAGGTAGTGACAGCAAAGCTGAGTTAAAG GGTTATCCAAGTCAGGTAGGGACAGCAAAGCTGAGTTAAAG < 41bp 0.78541144758824 0.522483531754133 NA NA prediction 0.525855831668214 Functional Loss - C15orf32 ENSG00000183643 UTR3 Human lincRNA chr15:93043683 chr15:93043682 . . 0 20 hm7G_associated_SNPs_8413 0 0 0 0 1 C15orf32 chr15:93043588 3'AG 93043588 Downstream 95bp 8085 chr12 107048021 107048021 1 + T G GBM 107048022 + 107048002 107048042 41 CTAGGCTGGAGGAGAACTATGAGATTGCAGAGGGGGTCTGC CTAGGCTGGAGGAGAACTAGGAGATTGCAGAGGGGGTCTGC < 41bp 0.865564029151841 0.602830475704276 NA NA prediction 0.52546710689513 Functional Loss - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107048022 chr12:107048021 stopgain 0.997 1 20 hm7G_associated_SNPs_8419 0 0 0 1 1 RFX4 chr12:107048006 3'AG 107048006 Downstream 16bp 8086 chr12 32140213 32140213 1 + T G UCEC 32140214 + 32140194 32140234 41 AAGAAGACTGGTTAAAATTTGTTGCTACAAAGAAAAGGACA AAGAAGACTGGTTAAAATTGGTTGCTACAAAGAAAAGGACA < 41bp 0.822907125012666 0.560195881004125 NA NA prediction 0.525422488017081 Functional Loss - KIAA1551 ENSG00000174718 CDS Human protein_coding chr12:32140214 chr12:32140213 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_8420 0 0 0 1 2 KIAA1551 chr12:32140173 3'AG 32140173 Downstream 41bp 8087 chr12 32140213 32140213 1 + T G UCEC 32140214 + 32140194 32140234 41 AAGAAGACTGGTTAAAATTTGTTGCTACAAAGAAAAGGACA AAGAAGACTGGTTAAAATTGGTTGCTACAAAGAAAAGGACA < 41bp 0.822907125012666 0.560195881004125 NA NA prediction 0.525422488017081 Functional Loss - KIAA1551 ENSG00000174718 CDS Human protein_coding chr12:32140214 chr12:32140213 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_8420 0 0 0 1 2 KIAA1551 chr12:32140256 5'GT 32140256 Upstream 44bp 8088 chr6 117246629 117246629 1 + T G LUAD 117246630 + 117246610 117246650 41 TTCCAGATGCGAGTAAAGCTGCTTTCACTGCTTCTCCGAGT TTCCAGATGCGAGTAAAGCGGCTTTCACTGCTTCTCCGAGT < 41bp 0.848829053895951 0.58612778602443 NA NA prediction 0.525402535743041 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246630 chr6:117246629 synonymous SNV . 0 20 hm7G_associated_SNPs_8421 0 0 0 0 1 RFX6 chr6:117246616 3'AG 117246616 Downstream 14bp 8089 chr14 57749688 57749688 1 + T G rs116583248 57749689 + 57749669 57749709 41 TGGAATACAAAACTAGTTTTGGCCAGCTTGAAGTATTTCGA TGGAATACAAAACTAGTTTGGGCCAGCTTGAAGTATTTCGA < 41bp 0.851546477703073 0.588863673109198 NA NA prediction 0.525365609187751 Functional Loss - AP5M1 ENSG00000053770 CDS Human protein_coding chr14:57749689 chr14:57749688 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8423 0 0 1 0 2 AP5M1 chr14:57749652 3'AG 57749652 Downstream 37bp 8090 chr14 57749688 57749688 1 + T G rs116583248 57749689 + 57749669 57749709 41 TGGAATACAAAACTAGTTTTGGCCAGCTTGAAGTATTTCGA TGGAATACAAAACTAGTTTGGGCCAGCTTGAAGTATTTCGA < 41bp 0.851546477703073 0.588863673109198 NA NA prediction 0.525365609187751 Functional Loss - AP5M1 ENSG00000053770 CDS Human protein_coding chr14:57749689 chr14:57749688 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8423 0 0 1 0 2 AP5M1 chr14:57749737 5'GT 57749737 Upstream 50bp 8091 chr11 71850422 71850422 1 + T G ESCA 71850423 + 71850403 71850443 41 TGGCGCAAAGAGCGCATTCTGAACGTGCCCCTGTGCAAAGA TGGCGCAAAGAGCGCATTCGGAACGTGCCCCTGTGCAAAGA < 41bp 0.866822504746451 0.604154412409775 NA NA prediction 0.525336184673352 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71850423 chr11:71850422 nonsynonymous SNV 0.678 0 20 hm7G_associated_SNPs_8424 0 0 0 0 1 FOLR3 chr11:71850391 3'AG 71850391 Downstream 32bp 8092 chr7 36461540 36461540 1 + T G SKCM 36461541 + 36461521 36461561 41 CTCTTAACTGCTGTGTTGATGAAGAACATGGAAAAGGGTCC CTCTTAACTGCTGTGTTGAGGAAGAACATGGAAAAGGGTCC < 41bp 0.852674486448572 0.590037685574799 NA NA prediction 0.525273601747546 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36461541 chr7:36461540 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8425 0 0 1 0 2 ANLN chr7:36461466 3'AG 36461466 Downstream 75bp 8093 chr7 36461540 36461540 1 + T G SKCM 36461541 + 36461521 36461561 41 CTCTTAACTGCTGTGTTGATGAAGAACATGGAAAAGGGTCC CTCTTAACTGCTGTGTTGAGGAAGAACATGGAAAAGGGTCC < 41bp 0.852674486448572 0.590037685574799 NA NA prediction 0.525273601747546 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36461541 chr7:36461540 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8425 0 0 1 0 2 ANLN chr7:36461601 5'GT 36461601 Upstream 62bp 8094 chr1 179520509 179520509 1 - A C LUSC 179520508 - 179520488 179520528 41 TTCTGTCAGGCACCCCTGCTGCCGTTCAGCTTCGATACCTC TTCTGTCAGGCACCCCTGCGGCCGTTCAGCTTCGATACCTC < 41bp 0.850783983446804 0.588183799089656 NA NA prediction 0.525200368714296 Functional Loss - NPHS2 ENSG00000116218 CDS Human protein_coding chr1:179520508 chr1:179520509 synonymous SNV . 0 20 hm7G_associated_SNPs_8427 0 0 0 0 1 NPHS2 chr1:179520586 3'AG 179520586 Downstream 78bp 8095 chr17 7155874 7155874 1 + T G GBM 7155875 + 7155855 7155895 41 GGACGCGAGTTGGAGATGTTGGACTCGCTGTTGGCCTTGGG GGACGCGAGTTGGAGATGTGGGACTCGCTGTTGGCCTTGGG < 41bp 0.762563947732685 0.437172462876052 NA NA prediction 0.52512789546537 Functional Loss - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7155875 chr17:7155874 nonsynonymous SNV 0.203 3 20 hm7G_associated_SNPs_8428 0 0 1 0 1 ELP5 chr17:7155915 5'GT 7155915 Upstream 42bp 8096 chr7 143042825 143042825 1 + T G SKCM 143042826 + 143042806 143042846 41 TCGCCTTTGTGGATGAGGATGAGGACGAAGACCTCTCTGGC TCGCCTTTGTGGATGAGGAGGAGGACGAAGACCTCTCTGGC < 41bp 0.863216441574665 0.600691684761653 NA NA prediction 0.525049513626024 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143042826 chr7:143042825 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_8429 0 0 0 0 1 CLCN1 chr7:143042855 5'GT 143042855 Upstream 31bp 8097 chr14 31358870 31358870 1 + T G HNSC 31358871 + 31358851 31358891 41 TGGGCACCTCTGGATGACCTGAAAGATATGGCTTCTAAACC TGGGCACCTCTGGATGACCGGAAAGATATGGCTTCTAAACC < 41bp 0.833725516987477 0.571229169415615 NA NA prediction 0.524992695143724 Functional Loss - COCH ENSG00000100473 CDS Human protein_coding chr14:31358871 chr14:31358870 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8430 0 0 1 0 1 COCH chr14:31358822 3'AG 31358822 Downstream 49bp 8098 chr10 98082454 98082454 1 + T G BLCA 98082455 + 98082435 98082475 41 AGTTCTGAAGTTAAAGCTGTGTTAAATGATGAACGATATCA AGTTCTGAAGTTAAAGCTGGGTTAAATGATGAACGATATCA < 41bp 0.83506210633847 0.572580275777682 NA NA prediction 0.524963661121575 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98082455 chr10:98082454 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8432 0 0 0 0 2 DNTT chr10:98082414 3'AG 98082414 Downstream 41bp 8099 chr10 98082454 98082454 1 + T G BLCA 98082455 + 98082435 98082475 41 AGTTCTGAAGTTAAAGCTGTGTTAAATGATGAACGATATCA AGTTCTGAAGTTAAAGCTGGGTTAAATGATGAACGATATCA < 41bp 0.83506210633847 0.572580275777682 NA NA prediction 0.524963661121575 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98082455 chr10:98082454 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8432 0 0 0 0 2 DNTT chr10:98082485 5'GT 98082485 Upstream 32bp 8100 chr3 46935398 46935398 1 + T G LUSC 46935399 + 46935379 46935419 41 TGACCTTCGGCTTGGCAGGTGGATGCAGATGACGTCATGAC TGACCTTCGGCTTGGCAGGGGGATGCAGATGACGTCATGAC < 41bp 0.859499855132296 0.597104315868195 NA NA prediction 0.524791078528202 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46935399 chr3:46935398 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8434 0 0 0 0 1 PTH1R chr3:46935397 3'AG 46935397 Downstream 2bp 8101 chr1 26873468 26873468 1 + T G UCEC 26873469 + 26873449 26873489 41 TTCTGGGCCAGGGATCCTTTGGCAAAGTGAGTCATGAGCCC TTCTGGGCCAGGGATCCTTGGGCAAAGTGAGTCATGAGCCC < 41bp 0.762344841130859 0.423877024266688 NA NA prediction 0.524689682261719 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26873469 chr1:26873468 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8435 0 0 1 0 1 RPS6KA1 chr1:26873474 5'GT 26873474 Upstream 7bp 8102 chr21 18924221 18924221 1 + T G SKCM 18924222 + 18924202 18924242 41 GGCACATATCAGTGCAAAGTGAAAAAAGCTCCTGGTGTTGC GGCACATATCAGTGCAAAGGGAAAAAAGCTCCTGGTGTTGC < 41bp 0.762312951987305 0.459680769558775 NA NA prediction 0.524625903974611 Functional Loss - CXADR ENSG00000154639 CDS Human protein_coding chr21:18924222 chr21:18924221 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8436 0 0 1 0 1 CXADR chr21:18924271 5'GT 18924271 Upstream 51bp 8103 chr17 41598915 41598915 1 + T G UCEC 41598916 + 41598896 41598936 41 CAGGACATTCGCAAGCAGATGTTAGGCATAATGGACAGGTA CAGGACATTCGCAAGCAGAGGTTAGGCATAATGGACAGGTA < 41bp 0.854711824504563 0.59241335657772 NA NA prediction 0.524596935853686 Functional Loss - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41598916 chr17:41598915 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8437 0 0 0 0 1 DHX8 chr17:41598933 5'GT 41598933 Upstream 19bp 8104 chr1 26440999 26440999 1 + T G UCEC 26441000 + 26440980 26441020 41 AAGAGCCAACATCCAAATGTGATTCACTTGGAGGAATGCAT AAGAGCCAACATCCAAATGGGATTCACTTGGAGGAATGCAT < 41bp 0.853624605532036 0.591368453282162 NA NA prediction 0.524512304499747 Functional Loss - PDIK1L ENSG00000175087 CDS Human protein_coding chr1:26441000 chr1:26440999 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8439 0 0 1 0 1 PDIK1L chr1:26441084 5'GT 26441084 Upstream 86bp 8105 chr12 49950982 49950982 1 + T G rs11541357 49950983 + 49950963 49951003 41 CAGAGAGCGGCCTGCTCACTGTTCCCCATGGGCCCAGCGAG CAGAGAGCGGCCTGCTCACGGTTCCCCATGGGCCCAGCGAG < 41bp 0.762247546516628 0.426114795890826 NA NA prediction 0.524495093033255 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49950983 chr12:49950982 synonymous SNV . 0 20 hm7G_associated_SNPs_8440 0 0 0 0 2 KCNH3 chr12:49950966 3'AG 49950966 Downstream 17bp 8106 chr12 49950982 49950982 1 + T G rs11541357 49950983 + 49950963 49951003 41 CAGAGAGCGGCCTGCTCACTGTTCCCCATGGGCCCAGCGAG CAGAGAGCGGCCTGCTCACGGTTCCCCATGGGCCCAGCGAG < 41bp 0.762247546516628 0.426114795890826 NA NA prediction 0.524495093033255 Functional Loss - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49950983 chr12:49950982 synonymous SNV . 0 20 hm7G_associated_SNPs_8440 0 0 0 0 2 KCNH3 chr12:49951042 5'GT 49951042 Upstream 61bp 8107 chr11 125778123 125778123 1 + T G COAD 125778124 + 125778104 125778144 41 CTAAAAGGAATCTATGCAATGGGATTTAATAGGCCATCTAA CTAAAAGGAATCTATGCAAGGGGATTTAATAGGCCATCTAA < 41bp 0.861262660189942 0.599038175959436 NA NA prediction 0.524448968461013 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125778124 chr11:125778123 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8442 0 0 0 0 2 DDX25 chr11:125778091 3'AG 125778091 Downstream 33bp 8108 chr11 125778123 125778123 1 + T G COAD 125778124 + 125778104 125778144 41 CTAAAAGGAATCTATGCAATGGGATTTAATAGGCCATCTAA CTAAAAGGAATCTATGCAAGGGGATTTAATAGGCCATCTAA < 41bp 0.861262660189942 0.599038175959436 NA NA prediction 0.524448968461013 Functional Loss - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125778124 chr11:125778123 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8442 0 0 0 0 2 DDX25 chr11:125778183 5'GT 125778183 Upstream 61bp 8109 chr10 101563847 101563847 1 + T G SKCM 101563848 + 101563828 101563868 41 TGAACCTGATGTCTGTGGATGCCCAGAAGCTCATGGATGTG TGAACCTGATGTCTGTGGAGGCCCAGAAGCTCATGGATGTG < 41bp 0.86322107246743 0.601002387657591 NA NA prediction 0.524437369619678 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101563848 chr10:101563847 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_8443 0 0 1 0 1 ABCC2 chr10:101563776 3'AG 101563776 Downstream 72bp 8110 chr11 5626793 5626793 1 + T G LUSC 5626794 + 5626774 5626814 41 GGGTCAACAATGGAGCTGCTGCAGGTAAGGCTTGTGAAGGA GGGTCAACAATGGAGCTGCGGCAGGTAAGGCTTGTGAAGGA < 41bp 0.858938775558139 0.596723021493084 NA NA prediction 0.524431508130111 Functional Loss - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5626794 chr11:5626793 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_8444 0 0 1 0 1 TRIM6;TRIM6-TRIM34 chr11:5626797 5'GT 5626797 Upstream 5bp 8111 chr7 30655554 30655554 1 + T G OV 30655555 + 30655535 30655575 41 AGCACTTTGTAGATCCCAGTGAGAAAGACCACCCCAAGTTC AGCACTTTGTAGATCCCAGGGAGAAAGACCACCCCAAGTTC < 41bp 0.762054621082946 0.4278026432436 NA NA prediction 0.524109242165892 Functional Loss - GARS ENSG00000106105 CDS Human protein_coding chr7:30655555 chr7:30655554 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_8445 0 0 1 0 1 GARS chr7:30655512 3'AG 30655512 Downstream 43bp 8112 chrX 149678312 149678312 1 + T G UCEC 149678313 + 149678293 149678333 41 CCCAACAGATGAGTCCATTTGAAGGTAAGCAGTTAAGGCCA CCCAACAGATGAGTCCATTGGAAGGTAAGCAGTTAAGGCCA < 41bp 0.762005394341565 0.442003003102231 NA NA prediction 0.52401078868313 Functional Loss - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149678313 chrX:149678312 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_8447 0 0 0 0 2 MAMLD1 chrX:149678232 3'AG 149678232 Downstream 81bp 8113 chrX 149678312 149678312 1 + T G UCEC 149678313 + 149678293 149678333 41 CCCAACAGATGAGTCCATTTGAAGGTAAGCAGTTAAGGCCA CCCAACAGATGAGTCCATTGGAAGGTAAGCAGTTAAGGCCA < 41bp 0.762005394341565 0.442003003102231 NA NA prediction 0.52401078868313 Functional Loss - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149678313 chrX:149678312 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_8447 0 0 0 0 2 MAMLD1 chrX:149678316 5'GT 149678316 Upstream 5bp 8114 chr13 111938519 111938519 1 + T G OV 111938520 + 111938500 111938540 41 AGTAAGAGCCCTAAGACCATGAAAAAGCTGCTGCCCAAGCG AGTAAGAGCCCTAAGACCAGGAAAAAGCTGCTGCCCAAGCG < 41bp 0.76190914099081 0.438101952742775 NA NA prediction 0.52381828198162 Functional Loss - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111938520 chr13:111938519 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8451 0 0 1 0 2 ARHGEF7 chr13:111938494 3'AG 111938494 Downstream 26bp 8115 chr13 111938519 111938519 1 + T G OV 111938520 + 111938500 111938540 41 AGTAAGAGCCCTAAGACCATGAAAAAGCTGCTGCCCAAGCG AGTAAGAGCCCTAAGACCAGGAAAAAGCTGCTGCCCAAGCG < 41bp 0.76190914099081 0.438101952742775 NA NA prediction 0.52381828198162 Functional Loss - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111938520 chr13:111938519 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8451 0 0 1 0 2 ARHGEF7 chr13:111938587 5'GT 111938587 Upstream 69bp 8116 chr1 12144606 12144606 1 + T G UCEC 12144607 + 12144587 12144627 41 TGCTGTTACCGCTGCCCCATGGGTGAGTGGGGGCGTTGGGG TGCTGTTACCGCTGCCCCAGGGGTGAGTGGGGGCGTTGGGG < 41bp 0.761898093809862 0.425530938314075 NA NA prediction 0.523796187619723 Functional Loss - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12144607 chr1:12144606 nonsynonymous SNV 0.008 2 20 hm7G_associated_SNPs_8452 0 0 0 0 2 TNFRSF8 chr1:12144521 3'AG 12144521 Downstream 86bp 8117 chr1 12144606 12144606 1 + T G UCEC 12144607 + 12144587 12144627 41 TGCTGTTACCGCTGCCCCATGGGTGAGTGGGGGCGTTGGGG TGCTGTTACCGCTGCCCCAGGGGTGAGTGGGGGCGTTGGGG < 41bp 0.761898093809862 0.425530938314075 NA NA prediction 0.523796187619723 Functional Loss - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12144607 chr1:12144606 nonsynonymous SNV 0.008 2 20 hm7G_associated_SNPs_8452 0 0 0 0 2 TNFRSF8 chr1:12144608 5'GT 12144608 Upstream 3bp 8118 chr13 25435432 25435432 1 + T G SKCM 25435433 + 25435413 25435453 41 ATTTAGATCATGGATTCACTGAAAAGATTCCGCAGTGCCAT ATTTAGATCATGGATTCACGGAAAAGATTCCGCAGTGCCAT < 41bp 0.832666855623127 0.570782003670035 NA NA prediction 0.523769703906185 Functional Loss - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25435433 chr13:25435432 synonymous SNV . 0 20 hm7G_associated_SNPs_8453 0 0 0 0 1 RNF17 chr13:25435406 3'AG 25435406 Downstream 27bp 8119 chr1 198711151 198711151 1 + T G LUSC 198711152 + 198711132 198711172 41 TGGTCCCATTGTGGTGCACTGCAGGTAGGAAAAACGAACAA TGGTCCCATTGTGGTGCACGGCAGGTAGGAAAAACGAACAA < 41bp 0.761733848609256 0.456023090504837 NA NA prediction 0.523467697218511 Functional Loss - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198711152 chr1:198711151 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_8456 0 0 1 0 1 PTPRC chr1:198711155 5'GT 198711155 Upstream 5bp 8120 chr19 42231224 42231224 1 + T G PCPG 42231225 + 42231205 42231245 41 TTGGAGTGCTGGTTGGGGTTGCTCTGATATAGCAGCCCTGG TTGGAGTGCTGGTTGGGGTGGCTCTGATATAGCAGCCCTGG < 41bp 0.847845771148755 0.586262399727628 NA NA prediction 0.523166742842254 Functional Loss - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42231225 chr19:42231224 synonymous SNV . 0 20 hm7G_associated_SNPs_8457 0 0 0 0 1 CEACAM5 chr19:42231154 3'AG 42231154 Downstream 71bp 8121 chr3 50131271 50131271 1 + T G SKCM 50131272 + 50131252 50131292 41 AGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCATCAC AGGGAGAGCAAGACCATCAGGCTGCGCGGCCTTCCCATCAC < 41bp 0.761483968640002 0.427979994305489 NA NA prediction 0.522967937280004 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131272 chr3:50131271 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8459 0 0 1 0 2 RBM5 chr3:50131254 3'AG 50131254 Downstream 18bp 8122 chr3 50131271 50131271 1 + T G SKCM 50131272 + 50131252 50131292 41 AGGGAGAGCAAGACCATCATGCTGCGCGGCCTTCCCATCAC AGGGAGAGCAAGACCATCAGGCTGCGCGGCCTTCCCATCAC < 41bp 0.761483968640002 0.427979994305489 NA NA prediction 0.522967937280004 Functional Loss - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131272 chr3:50131271 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8459 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 38bp 8123 chr12 21327517 21327517 1 + T G UCEC 21327518 + 21327498 21327538 41 GTTCCCTTTCTAGGAAATTTGCTTGTGATTGTATTTGTGAG GTTCCCTTTCTAGGAAATTGGCTTGTGATTGTATTTGTGAG < 41bp 0.761451727205103 0.470495620189759 NA NA prediction 0.522903454410205 Functional Loss - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21327518 chr12:21327517 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_8460 0 0 0 0 1 SLCO1B1 chr12:21327511 3'AG 21327511 Downstream 7bp 8124 chr2 231120195 231120195 1 + T G SKCM 231120196 + 231120176 231120216 41 ATGACTGTTCGGAAATGTGTGATGGAGAAGAGCGCCAGGAA ATGACTGTTCGGAAATGTGGGATGGAGAAGAGCGCCAGGAA < 41bp 0.85584932999235 0.594404588173965 NA NA prediction 0.52288948363677 Functional Loss - SP140 ENSG00000079263 CDS Human protein_coding chr2:231120196 chr2:231120195 nonsynonymous SNV 0.096 2 20 hm7G_associated_SNPs_8461 0 0 0 1 1 SP140 chr2:231120167 3'AG 231120167 Downstream 29bp 8125 chr1 17698840 17698840 1 + T G SKCM 17698841 + 17698821 17698861 41 TGTGTTGGGCACAGAAATCTGCTTGGATCTCAGCGGGTGAG TGTGTTGGGCACAGAAATCGGCTTGGATCTCAGCGGGTGAG < 41bp 0.810733821166221 0.549311316873574 NA NA prediction 0.522845008585293 Functional Loss - PADI6 ENSG00000256049 ncRNA_exonic Human other chr1:17698841 chr1:17698840 . 0.041 0 20 hm7G_associated_SNPs_8463 0 0 0 0 1 PADI6 chr1:17698856 5'GT 17698856 Upstream 17bp 8126 chr1 97771776 97771776 1 + T G BLCA 97771777 + 97771757 97771797 41 TCACAATATCAGTGACATTTGGGGTCAGCTTGGCAAAAAAA TCACAATATCAGTGACATTGGGGGTCAGCTTGGCAAAAAAA < 41bp 0.851246494770383 0.590010193856772 NA NA prediction 0.522472601827221 Functional Loss - DPYD ENSG00000188641 CDS Human protein_coding chr1:97771777 chr1:97771776 synonymous SNV . 0 20 hm7G_associated_SNPs_8467 0 0 0 0 2 DPYD chr1:97771745 3'AG 97771745 Downstream 32bp 8127 chr1 97771776 97771776 1 + T G BLCA 97771777 + 97771757 97771797 41 TCACAATATCAGTGACATTTGGGGTCAGCTTGGCAAAAAAA TCACAATATCAGTGACATTGGGGGTCAGCTTGGCAAAAAAA < 41bp 0.851246494770383 0.590010193856772 NA NA prediction 0.522472601827221 Functional Loss - DPYD ENSG00000188641 CDS Human antisense chr1:97771777 chr1:97771776 synonymous SNV . 0 20 hm7G_associated_SNPs_8467 0 0 0 0 2 DPYD-AS1 chr1:97771865 5'GT 97771865 Upstream 90bp 8128 chr5 172359485 172359485 1 + T G BLCA 172359486 + 172359466 172359506 41 AGATTGTGCCCACGGTTTATGAGGACAAGAGTGGCAAGCAG AGATTGTGCCCACGGTTTAGGAGGACAAGAGTGGCAAGCAG < 41bp 0.761128186095334 0.449830167895824 NA NA prediction 0.522256372190669 Functional Loss - ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172359486 chr5:172359485 stopgain 0.990 1 20 hm7G_associated_SNPs_8471 0 0 1 0 2 ERGIC1 chr5:172359439 3'AG 172359439 Downstream 47bp 8129 chr5 172359485 172359485 1 + T G BLCA 172359486 + 172359466 172359506 41 AGATTGTGCCCACGGTTTATGAGGACAAGAGTGGCAAGCAG AGATTGTGCCCACGGTTTAGGAGGACAAGAGTGGCAAGCAG < 41bp 0.761128186095334 0.449830167895824 NA NA prediction 0.522256372190669 Functional Loss - ERGIC1 ENSG00000113719 CDS Human protein_coding chr5:172359486 chr5:172359485 stopgain 0.990 1 20 hm7G_associated_SNPs_8471 0 0 1 0 2 ERGIC1 chr5:172359539 5'GT 172359539 Upstream 55bp 8130 chr12 120984389 120984389 1 + T G rs201659121 120984390 + 120984370 120984410 41 TTAGCTCTTCTTTTAATGGTGGAAGACGAGATGAGGTATGG TTAGCTCTTCTTTTAATGGGGGAAGACGAGATGAGGTATGG < 41bp 0.86639895919533 0.605369372524749 NA NA prediction 0.522059173341163 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120984390 chr12:120984389 synonymous SNV . 0 20 hm7G_associated_SNPs_8476 0 0 1 0 1 RNF10 chr12:120984404 5'GT 120984404 Upstream 16bp 8131 chr16 46934625 46934625 1 + T G STAD 46934626 + 46934606 46934646 41 TGCACCTACCCAAACCTGCTGGACAGCCCCAGCTTCCCAGA TGCACCTACCCAAACCTGCGGGACAGCCCCAGCTTCCCAGA < 41bp 0.880343744674435 0.619322392612198 NA NA prediction 0.522042704124474 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46934626 chr16:46934625 nonsynonymous SNV 0.934 2 20 hm7G_associated_SNPs_8477 0 0 1 0 2 GPT2 chr16:46934594 3'AG 46934594 Downstream 32bp 8132 chr16 46934625 46934625 1 + T G STAD 46934626 + 46934606 46934646 41 TGCACCTACCCAAACCTGCTGGACAGCCCCAGCTTCCCAGA TGCACCTACCCAAACCTGCGGGACAGCCCCAGCTTCCCAGA < 41bp 0.880343744674435 0.619322392612198 NA NA prediction 0.522042704124474 Functional Loss - GPT2 ENSG00000166123 CDS Human protein_coding chr16:46934626 chr16:46934625 nonsynonymous SNV 0.934 2 20 hm7G_associated_SNPs_8477 0 0 1 0 2 GPT2 chr16:46934702 5'GT 46934702 Upstream 78bp 8133 chr17 7810224 7810224 1 + T G SARC 7810225 + 7810205 7810245 41 ATCAATGGGCGTTGGTCAATGCCGGAACTGATGCCTGACCC ATCAATGGGCGTTGGTCAAGGCCGGAACTGATGCCTGACCC < 41bp 0.760900857659985 0.422679580834229 NA NA prediction 0.52180171531997 Functional Loss - CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810225 chr17:7810224 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_8479 0 0 1 0 1 CHD3 chr17:7810187 3'AG 7810187 Downstream 38bp 8134 chr4 55524222 55524222 1 + T G BLCA 55524223 + 55524203 55524243 41 TGGGATTTTCTCTGCGTTCTGCTCCTACTGCTTCGCGTCCA TGGGATTTTCTCTGCGTTCGGCTCCTACTGCTTCGCGTCCA < 41bp 0.854814507190469 0.593946841530902 NA NA prediction 0.521735331319135 Functional Loss - KIT ENSG00000157404 CDS Human protein_coding chr4:55524223 chr4:55524222 nonsynonymous SNV 0.569 1 20 hm7G_associated_SNPs_8480 0 0 0 0 1 KIT chr4:55524248 5'GT 55524248 Upstream 27bp 8135 chr12 69982034 69982034 1 + T G LUSC 69982035 + 69982015 69982055 41 CGCTGTTGAGTTCTGCAGTTGATCATGGGTTTGTATAGCAA CGCTGTTGAGTTCTGCAGTGGATCATGGGTTTGTATAGCAA < 41bp 0.865327066147557 0.604463746883968 NA NA prediction 0.521726638527177 Functional Loss - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69982035 chr12:69982034 synonymous SNV . 0 20 hm7G_associated_SNPs_8481 0 0 1 0 1 CCT2 chr12:69982042 5'GT 69982042 Upstream 9bp 8136 chr9 130219659 130219659 1 + T G UCEC 130219660 + 130219640 130219680 41 TCCTGCAGCCTCCTGAGTCTGGCAACCATCAAGGTACTGGG TCCTGCAGCCTCCTGAGTCGGGCAACCATCAAGGTACTGGG < 41bp 0.760819793137032 0.427462956870718 NA NA prediction 0.521639586274065 Functional Loss - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130219660 chr9:130219659 nonsynonymous SNV 0.880 2 20 hm7G_associated_SNPs_8484 0 0 1 0 2 LRSAM1 chr9:130219595 3'AG 130219595 Downstream 65bp 8137 chr9 130219659 130219659 1 + T G UCEC 130219660 + 130219640 130219680 41 TCCTGCAGCCTCCTGAGTCTGGCAACCATCAAGGTACTGGG TCCTGCAGCCTCCTGAGTCGGGCAACCATCAAGGTACTGGG < 41bp 0.760819793137032 0.427462956870718 NA NA prediction 0.521639586274065 Functional Loss - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130219660 chr9:130219659 nonsynonymous SNV 0.880 2 20 hm7G_associated_SNPs_8484 0 0 1 0 2 LRSAM1 chr9:130219672 5'GT 130219672 Upstream 14bp 8138 chr17 30687944 30687944 1 + T G SKCM 30687945 + 30687925 30687965 41 ATGCCAGGTGTTCCTCCTCTGATGCCAGGAATGCCACCAGT ATGCCAGGTGTTCCTCCTCGGATGCCAGGAATGCCACCAGT < 41bp 0.861228626943735 0.600421069611001 NA NA prediction 0.521615114665468 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687945 chr17:30687944 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8485 0 0 1 1 2 ZNF207 chr17:30687911 3'AG 30687911 Downstream 34bp 8139 chr17 30687944 30687944 1 + T G SKCM 30687945 + 30687925 30687965 41 ATGCCAGGTGTTCCTCCTCTGATGCCAGGAATGCCACCAGT ATGCCAGGTGTTCCTCCTCGGATGCCAGGAATGCCACCAGT < 41bp 0.861228626943735 0.600421069611001 NA NA prediction 0.521615114665468 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30687945 chr17:30687944 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8485 0 0 1 1 2 ZNF207 chr17:30687986 5'GT 30687986 Upstream 43bp 8140 chr12 98991696 98991696 1 + T G THCA 98991697 + 98991677 98991717 41 TTACACTTAAAGAGGATGGTGTTCGTGGTTTGGCTAAAGGA TTACACTTAAAGAGGATGGGGTTCGTGGTTTGGCTAAAGGA < 41bp 0.859093144219204 0.59829045838813 NA NA prediction 0.521605371662149 Functional Loss - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98991697 chr12:98991696 synonymous SNV . 0 20 hm7G_associated_SNPs_8486 0 0 1 0 1 SLC25A3 chr12:98991634 3'AG 98991634 Downstream 63bp 8141 chr19 17688814 17688814 1 + T G rs2115492 17688815 + 17688795 17688835 41 TGGGGATCCAGATGCTGCCTGGCTACCGGGACCCCTACCAC TGGGGATCCAGATGCTGCCGGGCTACCGGGACCCCTACCAC < 41bp 0.882850767740532 0.622063418714393 NA NA prediction 0.521574698052277 Functional Loss - COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17688815 chr19:17688814 synonymous SNV . 0 20 hm7G_associated_SNPs_8487 0 0 1 0 2 COLGALT1 chr19:17688766 3'AG 17688766 Downstream 49bp 8142 chr19 17688814 17688814 1 + T G rs2115492 17688815 + 17688795 17688835 41 TGGGGATCCAGATGCTGCCTGGCTACCGGGACCCCTACCAC TGGGGATCCAGATGCTGCCGGGCTACCGGGACCCCTACCAC < 41bp 0.882850767740532 0.622063418714393 NA NA prediction 0.521574698052277 Functional Loss - COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17688815 chr19:17688814 synonymous SNV . 0 20 hm7G_associated_SNPs_8487 0 0 1 0 2 COLGALT1 chr19:17688898 5'GT 17688898 Upstream 85bp 8143 chr5 94922411 94922411 1 + T G UCEC 94922412 + 94922392 94922432 41 AGAGCATTTTATTATGCTATGTGTGCTGAGACAGATGCCAT AGAGCATTTTATTATGCTAGGTGTGCTGAGACAGATGCCAT < 41bp 0.76071379752137 0.469258293388859 NA NA prediction 0.521427595042739 Functional Loss - ARSK ENSG00000164291 CDS Human protein_coding chr5:94922412 chr5:94922411 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8490 0 0 1 0 1 ARSK chr5:94922437 5'GT 94922437 Upstream 27bp 8144 chr13 44464385 44464385 1 + T G UCEC 44464386 + 44464366 44464406 41 TTAATTTTGGTACACAGATTGGCTTCATATCAATTAAAGAA TTAATTTTGGTACACAGATGGGCTTCATATCAATTAAAGAA < 41bp 0.760672111487122 0.451430113592326 NA NA prediction 0.521344222974245 Functional Loss - LACC1 ENSG00000179630 CDS Human protein_coding chr13:44464386 chr13:44464385 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_8492 0 0 0 0 1 LACC1 chr13:44464410 5'GT 44464410 Upstream 26bp 8145 chr19 11793389 11793389 1 + T G rs575952815 11793390 + 11793370 11793410 41 ACCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTG ACCTTTGAGGATGTGGCTGGGAACTTCACCCAGGAGGAGTG < 41bp 0.76064414426357 0.472906948656419 NA NA prediction 0.52128828852714 Functional Loss - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11793390 chr19:11793389 . . 0 20 hm7G_associated_SNPs_8493 0 0 0 0 2 ZNF833P chr19:11793361 3'AG 11793361 Downstream 29bp 8146 chr19 11793389 11793389 1 + T G rs575952815 11793390 + 11793370 11793410 41 ACCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTG ACCTTTGAGGATGTGGCTGGGAACTTCACCCAGGAGGAGTG < 41bp 0.76064414426357 0.472906948656419 NA NA prediction 0.52128828852714 Functional Loss - ZNF833P ENSG00000197332;ENSG00000267343 ncRNA_exonic Human other chr19:11793390 chr19:11793389 . . 0 20 hm7G_associated_SNPs_8493 0 0 0 0 2 ZNF833P chr19:11793487 5'GT 11793487 Upstream 99bp 8147 chr14 93676263 93676263 1 + T G READ 93676264 + 93676244 93676284 41 TTTAGCTTGCAGTTATGAATGTCATGGAAGTCACAAACTAT TTTAGCTTGCAGTTATGAAGGTCATGGAAGTCACAAACTAT < 41bp 0.760482583691962 0.443292876480267 NA NA prediction 0.520965167383924 Functional Loss - UBR7 ENSG00000012963;ENSG00000259066 CDS Human other chr14:93676264 chr14:93676263 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8495 0 0 1 0 2 UBR7 chr14:93676170 3'AG 93676170 Downstream 94bp 8148 chr14 93676263 93676263 1 + T G READ 93676264 + 93676244 93676284 41 TTTAGCTTGCAGTTATGAATGTCATGGAAGTCACAAACTAT TTTAGCTTGCAGTTATGAAGGTCATGGAAGTCACAAACTAT < 41bp 0.760482583691962 0.443292876480267 NA NA prediction 0.520965167383924 Functional Loss - UBR7 ENSG00000012963;ENSG00000259066 CDS Human other chr14:93676264 chr14:93676263 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8495 0 0 1 0 2 UBR7 chr14:93676303 5'GT 93676303 Upstream 41bp 8149 chr10 37505152 37505152 1 + T G COAD 37505153 + 37505133 37505173 41 TGGATACAGTTCATTCTTGTGAAAGAGCAAGGGAACTTCAA TGGATACAGTTCATTCTTGGGAAAGAGCAAGGGAACTTCAA < 41bp 0.847947434226607 0.587573399914303 NA NA prediction 0.520748068624608 Functional Loss - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37505153 chr10:37505152 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_8498 0 0 0 0 1 ANKRD30A chr10:37505109 3'AG 37505109 Downstream 44bp 8150 chr3 73113280 73113280 1 + T G SKCM 73113281 + 73113261 73113301 41 AGGCAAATTTGCAGCAAAATGAGGAGAAAAATCACAGGTTT AGGCAAATTTGCAGCAAAAGGAGGAGAAAAATCACAGGTTT < 41bp 0.840228521582333 0.579896706989932 NA NA prediction 0.520663629184801 Functional Loss - PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113281 chr3:73113280 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_8499 0 0 0 0 1 PPP4R2 chr3:73113297 5'GT 73113297 Upstream 18bp 8151 chr12 16050876 16050876 1 + T G UCEC 16050877 + 16050857 16050897 41 ATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTTGCA ATTCTGCATCTCTTCATCCGGAGAAAGAATTTCTTGTTGCA < 41bp 0.846905767651784 0.586676924508253 NA NA prediction 0.520457686287063 Functional Loss - STRAP ENSG00000023734 CDS Human protein_coding chr12:16050877 chr12:16050876 synonymous SNV . 0 20 hm7G_associated_SNPs_8501 0 0 1 0 2 STRAP chr12:16050816 3'AG 16050816 Downstream 61bp 8152 chr12 16050876 16050876 1 + T G UCEC 16050877 + 16050857 16050897 41 ATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTTGCA ATTCTGCATCTCTTCATCCGGAGAAAGAATTTCTTGTTGCA < 41bp 0.846905767651784 0.586676924508253 NA NA prediction 0.520457686287063 Functional Loss - STRAP ENSG00000023734 CDS Human protein_coding chr12:16050877 chr12:16050876 synonymous SNV . 0 20 hm7G_associated_SNPs_8501 0 0 1 0 2 STRAP chr12:16050952 5'GT 16050952 Upstream 77bp 8153 chr5 76251567 76251567 1 + T G LUAD 76251568 + 76251548 76251588 41 AGCGGTACATAGATTTCTGTGAGAGTGGTCTTAGCAGGAGG AGCGGTACATAGATTTCTGGGAGAGTGGTCTTAGCAGGAGG < 41bp 0.760137084371217 0.423118211326308 NA NA prediction 0.520274168742434 Functional Loss - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76251568 chr5:76251567 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_8503 0 0 0 0 1 CRHBP chr5:76251478 3'AG 76251478 Downstream 90bp 8154 chr20 39721113 39721113 1 + T G GBM 39721114 + 39721094 39721134 41 GTGCTTTGTCTTTTAAAGGTGGGAAGAAGAGCGCTATCCTG GTGCTTTGTCTTTTAAAGGGGGGAAGAAGAGCGCTATCCTG < 41bp 0.856861624329049 0.596744413132695 NA NA prediction 0.520234422392707 Functional Loss - TOP1 ENSG00000198900 CDS Human protein_coding chr20:39721114 chr20:39721113 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8504 0 0 1 0 1 TOP1 chr20:39721112 3'AG 39721112 Downstream 2bp 8155 chr19 58921394 58921394 1 + T G KIRC 58921395 + 58921375 58921415 41 AGGAGTGGGGGCTCCTTAATGTGACCCAGAAGGGCCTATAC AGGAGTGGGGGCTCCTTAAGGTGACCCAGAAGGGCCTATAC < 41bp 0.760071338032213 0.429086490676914 NA NA prediction 0.520142676064426 Functional Loss - ZNF584 ENSG00000171574 CDS Human protein_coding chr19:58921395 chr19:58921394 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8505 0 0 0 0 4 ZNF584 chr19:58921308 3'AG 58921308 Downstream 87bp 8156 chr19 58921394 58921394 1 + T G KIRC 58921395 + 58921375 58921415 41 AGGAGTGGGGGCTCCTTAATGTGACCCAGAAGGGCCTATAC AGGAGTGGGGGCTCCTTAAGGTGACCCAGAAGGGCCTATAC < 41bp 0.760071338032213 0.429086490676914 NA NA prediction 0.520142676064426 Functional Loss - ZNF584 ENSG00000171574 CDS Human protein_coding chr19:58921395 chr19:58921394 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8505 0 0 0 0 4 ZNF584 chr19:58921332 3'AG 58921332 Downstream 63bp 8157 chr19 58921394 58921394 1 + T G KIRC 58921395 + 58921375 58921415 41 AGGAGTGGGGGCTCCTTAATGTGACCCAGAAGGGCCTATAC AGGAGTGGGGGCTCCTTAAGGTGACCCAGAAGGGCCTATAC < 41bp 0.760071338032213 0.429086490676914 NA NA prediction 0.520142676064426 Functional Loss - ZNF584 ENSG00000171574 CDS Human protein_coding chr19:58921395 chr19:58921394 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8505 0 0 0 0 4 ZNF584 chr19:58921373 3'AG 58921373 Downstream 22bp 8158 chr19 58921394 58921394 1 + T G KIRC 58921395 + 58921375 58921415 41 AGGAGTGGGGGCTCCTTAATGTGACCCAGAAGGGCCTATAC AGGAGTGGGGGCTCCTTAAGGTGACCCAGAAGGGCCTATAC < 41bp 0.760071338032213 0.429086490676914 NA NA prediction 0.520142676064426 Functional Loss - ZNF584 ENSG00000171574 CDS Human protein_coding chr19:58921395 chr19:58921394 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8505 0 0 0 0 4 ZNF584 chr19:58921458 5'GT 58921458 Upstream 65bp 8159 chr2 201480735 201480735 1 + T G UCEC 201480736 + 201480716 201480756 41 TTGCAGACAAGTATGAAAGTGCTTTAGAAGATCTTCATTCC TTGCAGACAAGTATGAAAGGGCTTTAGAAGATCTTCATTCC < 41bp 0.76006552424292 0.428013578694782 NA NA prediction 0.520131048485839 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201480736 chr2:201480735 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_8506 0 0 0 0 2 AOX1 chr2:201480694 3'AG 201480694 Downstream 42bp 8160 chr2 201480735 201480735 1 + T G UCEC 201480736 + 201480716 201480756 41 TTGCAGACAAGTATGAAAGTGCTTTAGAAGATCTTCATTCC TTGCAGACAAGTATGAAAGGGCTTTAGAAGATCTTCATTCC < 41bp 0.76006552424292 0.428013578694782 NA NA prediction 0.520131048485839 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201480736 chr2:201480735 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_8506 0 0 0 0 2 AOX1 chr2:201480786 5'GT 201480786 Upstream 52bp 8161 chr10 81838495 81838495 1 - A C LIHC 81838494 - 81838474 81838514 41 ACTGTGAACCAGAACAGACTGCCTCGCTGAAAGTAGGTCGC ACTGTGAACCAGAACAGACGGCCTCGCTGAAAGTAGGTCGC < 41bp 0.760062009283164 0.443426354110143 NA NA prediction 0.520124018566328 Functional Loss - TMEM254 ENSG00000133678 CDS Human protein_coding chr10:81838494 chr10:81838495 nonsynonymous SNV 0.054 0 20 hm7G_associated_SNPs_8507 0 0 0 0 1 TMEM254 chr10:81838483 5'GT 81838483 Upstream 13bp 8162 chr1 162487893 162487893 1 + T G SKCM 162487894 + 162487874 162487914 41 ATGTGTTTTAATAATCAGATGTTGTAGAAGATGTAAAAGAG ATGTGTTTTAATAATCAGAGGTTGTAGAAGATGTAAAAGAG < 41bp 0.823632658743855 0.56359380462643 NA NA prediction 0.520077708234849 Functional Loss - UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162487894 chr1:162487893 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_8508 0 0 1 0 2 UHMK1 chr1:162487892 3'AG 162487892 Downstream 2bp 8163 chr1 162487893 162487893 1 + T G SKCM 162487894 + 162487874 162487914 41 ATGTGTTTTAATAATCAGATGTTGTAGAAGATGTAAAAGAG ATGTGTTTTAATAATCAGAGGTTGTAGAAGATGTAAAAGAG < 41bp 0.823632658743855 0.56359380462643 NA NA prediction 0.520077708234849 Functional Loss - UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162487894 chr1:162487893 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_8508 0 0 1 0 2 UHMK1 chr1:162487980 5'GT 162487980 Upstream 88bp 8164 chr4 71099865 71099865 1 + T G OV 71099866 + 71099846 71099886 41 ATTTTCCTATTCCAATACCTGAATCTGCCCCTACAACTCCC ATTTTCCTATTCCAATACCGGAATCTGCCCCTACAACTCCC < 41bp 0.759914446029582 0.472922528800851 NA NA prediction 0.519828892059164 Functional Loss - FDCSP ENSG00000181617 CDS Human protein_coding chr4:71099866 chr4:71099865 synonymous SNV . 0 20 hm7G_associated_SNPs_8510 0 0 0 0 1 FDCSP chr4:71099932 5'GT 71099932 Upstream 68bp 8165 chr15 90997755 90997755 1 + T G STAD 90997756 + 90997736 90997776 41 CAAGCTTGCGTGGACCATGTGAACCTGGTGGTGCAAGAGGA CAAGCTTGCGTGGACCATGGGAACCTGGTGGTGCAAGAGGA < 41bp 0.860392447052417 0.600557473936241 NA NA prediction 0.519669946232353 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:90997756 chr15:90997755 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_8511 0 0 1 0 1 IQGAP1 chr15:90997660 3'AG 90997660 Downstream 96bp 8166 chr1 67796448 67796448 1 + T G UCEC 67796449 + 67796429 67796469 41 ACATCTTTATAAGGGAAGTTGGAGTGATTGGAGTGAATCAT ACATCTTTATAAGGGAAGTGGGAGTGATTGGAGTGAATCAT < 41bp 0.862139100370529 0.602398937289149 NA NA prediction 0.51948032616276 Functional Loss - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67796449 chr1:67796448 nonsynonymous SNV 0.853 4 20 hm7G_associated_SNPs_8513 0 0 0 0 1 IL12RB2 chr1:67796493 5'GT 67796493 Upstream 46bp 8167 chr14 90730104 90730104 1 + T G KIRC 90730105 + 90730085 90730125 41 ATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTC ATGCCATCGTGTCTACATCGGTGGGCTCAGAACACTACGTC < 41bp 0.759725890325302 0.436034458617607 NA NA prediction 0.519451780650605 Functional Loss - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90730105 chr14:90730104 synonymous SNV . 0 20 hm7G_associated_SNPs_8514 0 0 0 0 2 PSMC1 chr14:90730006 3'AG 90730006 Downstream 99bp 8168 chr14 90730104 90730104 1 + T G KIRC 90730105 + 90730085 90730125 41 ATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTC ATGCCATCGTGTCTACATCGGTGGGCTCAGAACACTACGTC < 41bp 0.759725890325302 0.436034458617607 NA NA prediction 0.519451780650605 Functional Loss - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90730105 chr14:90730104 synonymous SNV . 0 20 hm7G_associated_SNPs_8514 0 0 0 0 2 PSMC1 chr14:90730191 5'GT 90730191 Upstream 88bp 8169 chr19 45854226 45854226 1 + T G KIRC 45854227 + 45854207 45854247 41 TGCAGAATGAAGAGAGCCATGTCACTCAACACACTGAACGT TGCAGAATGAAGAGAGCCAGGTCACTCAACACACTGAACGT < 41bp 0.759709375077336 0.427917331636279 NA NA prediction 0.519418750154671 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45854227 chr19:45854226 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_8515 0 0 0 0 2 KLC3 chr19:45854212 3'AG 45854212 Downstream 15bp 8170 chr19 45854226 45854226 1 + T G KIRC 45854227 + 45854207 45854247 41 TGCAGAATGAAGAGAGCCATGTCACTCAACACACTGAACGT TGCAGAATGAAGAGAGCCAGGTCACTCAACACACTGAACGT < 41bp 0.759709375077336 0.427917331636279 NA NA prediction 0.519418750154671 Functional Loss - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45854227 chr19:45854226 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_8515 0 0 0 0 2 KLC3 chr19:45854275 5'GT 45854275 Upstream 50bp 8171 chr6 55198717 55198717 1 + T G SKCM 55198718 + 55198698 55198738 41 GTACTGTGAACAAACTGCTTGGAAAAAAATGTATCAATAAA GTACTGTGAACAAACTGCTGGGAAAAAAATGTATCAATAAA < 41bp 0.835761398799244 0.576141565470197 NA NA prediction 0.519239666658095 Functional Loss - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55198718 chr6:55198717 synonymous SNV . 0 20 hm7G_associated_SNPs_8516 0 0 0 0 1 GFRAL chr6:55198742 5'GT 55198742 Upstream 26bp 8172 chr2 24358009 24358009 1 + T G rs530786089 24358010 + 24357990 24358030 41 TTTTAGCTAAAGAAGATACTGAGGCAGCTATTCAATCAATA TTTTAGCTAAAGAAGATACGGAGGCAGCTATTCAATCAATA < 41bp 0.759427700655484 0.463907464135588 NA NA prediction 0.518855401310967 Functional Loss - FAM228B ENSG00000219626;ENSG00000266118 CDS Human other chr2:24358010 chr2:24358009 synonymous SNV . 0 20 hm7G_associated_SNPs_8519 0 0 1 0 2 FAM228B chr2:24357989 3'AG 24357989 Downstream 21bp 8173 chr2 24358009 24358009 1 + T G rs530786089 24358010 + 24357990 24358030 41 TTTTAGCTAAAGAAGATACTGAGGCAGCTATTCAATCAATA TTTTAGCTAAAGAAGATACGGAGGCAGCTATTCAATCAATA < 41bp 0.759427700655484 0.463907464135588 NA NA prediction 0.518855401310967 Functional Loss - FAM228B ENSG00000219626;ENSG00000266118 CDS Human other chr2:24358010 chr2:24358009 synonymous SNV . 0 20 hm7G_associated_SNPs_8519 0 0 1 0 2 FAM228B chr2:24358057 5'GT 24358057 Upstream 49bp 8174 chr16 31309089 31309089 1 + T G OV 31309090 + 31309070 31309110 41 CTCGGTGGCAGTGTGATGCTGTTCTCTACGGGGAGCAGGGC CTCGGTGGCAGTGTGATGCGGTTCTCTACGGGGAGCAGGGC < 41bp 0.759411428037757 0.425462793852848 NA NA prediction 0.518822856075513 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309090 chr16:31309089 synonymous SNV . 0 20 hm7G_associated_SNPs_8520 0 0 0 0 2 ITGAM chr16:31309063 3'AG 31309063 Downstream 27bp 8175 chr16 31309089 31309089 1 + T G OV 31309090 + 31309070 31309110 41 CTCGGTGGCAGTGTGATGCTGTTCTCTACGGGGAGCAGGGC CTCGGTGGCAGTGTGATGCGGTTCTCTACGGGGAGCAGGGC < 41bp 0.759411428037757 0.425462793852848 NA NA prediction 0.518822856075513 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309090 chr16:31309089 synonymous SNV . 0 20 hm7G_associated_SNPs_8520 0 0 0 0 2 ITGAM chr16:31309066 3'AG 31309066 Downstream 24bp 8176 chr6 41309536 41309536 1 + T G BLCA 41309537 + 41309517 41309557 41 TCTCCTCCCTGGCAGCCTCTGCCTCCACACAGACCTCCTGG TCTCCTCCCTGGCAGCCTCGGCCTCCACACAGACCTCCTGG < 41bp 0.75940818537448 0.431857529834531 NA NA prediction 0.518816370748961 Functional Loss - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41309537 chr6:41309536 synonymous SNV . 0 20 hm7G_associated_SNPs_8521 0 0 0 0 1 NCR2 chr6:41309532 3'AG 41309532 Downstream 5bp 8177 chr4 42077755 42077755 1 + T G SKCM 42077756 + 42077736 42077776 41 TAGATTTTGATGGGCGAGTTGTTACAAGATCATATTTGGAA TAGATTTTGATGGGCGAGTGGTTACAAGATCATATTTGGAA < 41bp 0.828250566528003 0.568845504769109 NA NA prediction 0.518810123517788 Functional Loss - SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42077756 chr4:42077755 synonymous SNV . 0 20 hm7G_associated_SNPs_8522 0 0 1 0 2 SLC30A9 chr4:42077674 3'AG 42077674 Downstream 82bp 8178 chr4 42077755 42077755 1 + T G SKCM 42077756 + 42077736 42077776 41 TAGATTTTGATGGGCGAGTTGTTACAAGATCATATTTGGAA TAGATTTTGATGGGCGAGTGGTTACAAGATCATATTTGGAA < 41bp 0.828250566528003 0.568845504769109 NA NA prediction 0.518810123517788 Functional Loss - SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42077756 chr4:42077755 synonymous SNV . 0 20 hm7G_associated_SNPs_8522 0 0 1 0 2 SLC30A9 chr4:42077803 5'GT 42077803 Upstream 49bp 8179 chr7 30963075 30963075 1 + T G LAML 30963076 + 30963056 30963096 41 TGTTCCTAGATTTTCTGGGTGGGGCCATTCATCGGGGGAGC TGTTCCTAGATTTTCTGGGGGGGGCCATTCATCGGGGGAGC < 41bp 0.850838834223653 0.591540275776461 NA NA prediction 0.518597116894385 Functional Loss - AQP1 ENSG00000240583;ENSG00000250424 CDS Human other chr7:30963076 chr7:30963075 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_8526 0 0 1 0 1 AQP1 chr7:30963065 3'AG 30963065 Downstream 11bp 8180 chr3 184020595 184020595 1 + T G SKCM 184020596 + 184020576 184020616 41 CAGCTCAACAGCAACTTCTTGGCCTTAGCTCGGGAGGTGAG CAGCTCAACAGCAACTTCTGGGCCTTAGCTCGGGAGGTGAG < 41bp 0.872571740379694 0.613391909094512 NA NA prediction 0.518359662570364 Functional Loss - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184020596 chr3:184020595 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8528 0 0 1 0 1 PSMD2 chr3:184020611 5'GT 184020611 Upstream 17bp 8181 chr21 44153531 44153531 1 + T G UCEC 44153532 + 44153512 44153552 41 GCTGTCCTAGAGAAACGCGTGGAATGTGAGTGACGTTTCTG GCTGTCCTAGAGAAACGCGGGGAATGTGAGTGACGTTTCTG < 41bp 0.827619790739044 0.568442205437477 NA NA prediction 0.518355170603134 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44153532 chr21:44153531 nonsynonymous SNV 0.896 3 20 hm7G_associated_SNPs_8529 0 0 0 0 2 PDE9A chr21:44153466 3'AG 44153466 Downstream 66bp 8182 chr21 44153531 44153531 1 + T G UCEC 44153532 + 44153512 44153552 41 GCTGTCCTAGAGAAACGCGTGGAATGTGAGTGACGTTTCTG GCTGTCCTAGAGAAACGCGGGGAATGTGAGTGACGTTTCTG < 41bp 0.827619790739044 0.568442205437477 NA NA prediction 0.518355170603134 Functional Loss - PDE9A ENSG00000160191 CDS Human protein_coding chr21:44153532 chr21:44153531 nonsynonymous SNV 0.896 3 20 hm7G_associated_SNPs_8529 0 0 0 0 2 PDE9A chr21:44153536 5'GT 44153536 Upstream 6bp 8183 chr1 160093778 160093778 1 + T G COAD 160093779 + 160093759 160093799 41 TGTGGTCATTGTCACTGGCTGCTTCTCCTACTACCAGGAGG TGTGGTCATTGTCACTGGCGGCTTCTCCTACTACCAGGAGG < 41bp 0.759125704904652 0.41703290220508 NA NA prediction 0.518251409809304 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160093779 chr1:160093778 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8530 0 0 0 0 1 ATP1A2 chr1:160093846 5'GT 160093846 Upstream 69bp 8184 chr2 177188191 177188191 1 + T G CESC 177188192 + 177188172 177188212 41 CAGAATATATGTCTCCATCTGGTAAGTGTGTTTTTTTTTCT CAGAATATATGTCTCCATCGGGTAAGTGTGTTTTTTTTTCT < 41bp 0.758970433674136 0.45719646113551 NA NA prediction 0.517940867348272 Functional Loss - MTX2 ENSG00000128654 CDS Human protein_coding chr2:177188192 chr2:177188191 synonymous SNV . 0 20 hm7G_associated_SNPs_8532 0 0 0 0 2 MTX2 chr2:177188120 3'AG 177188120 Downstream 72bp 8185 chr2 177188191 177188191 1 + T G CESC 177188192 + 177188172 177188212 41 CAGAATATATGTCTCCATCTGGTAAGTGTGTTTTTTTTTCT CAGAATATATGTCTCCATCGGGTAAGTGTGTTTTTTTTTCT < 41bp 0.758970433674136 0.45719646113551 NA NA prediction 0.517940867348272 Functional Loss - MTX2 ENSG00000128654 CDS Human protein_coding chr2:177188192 chr2:177188191 synonymous SNV . 0 20 hm7G_associated_SNPs_8532 0 0 0 0 2 MTX2 chr2:177188192 5'GT 177188192 Upstream 2bp 8186 chr15 40700154 40700154 1 + T G UCEC 40700155 + 40700135 40700175 41 CAGGAATTTTGGAAGCAGCTGGGGAACCTGGGCGTATTGGG CAGGAATTTTGGAAGCAGCGGGGGAACCTGGGCGTATTGGG < 41bp 0.876542183911749 0.617664170690857 NA NA prediction 0.517756026441784 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40700155 chr15:40700154 nonsynonymous SNV 0.960 5 20 hm7G_associated_SNPs_8536 0 0 1 0 2 IVD chr15:40700138 3'AG 40700138 Downstream 17bp 8187 chr15 40700154 40700154 1 + T G UCEC 40700155 + 40700135 40700175 41 CAGGAATTTTGGAAGCAGCTGGGGAACCTGGGCGTATTGGG CAGGAATTTTGGAAGCAGCGGGGGAACCTGGGCGTATTGGG < 41bp 0.876542183911749 0.617664170690857 NA NA prediction 0.517756026441784 Functional Loss - IVD ENSG00000128928 CDS Human protein_coding chr15:40700155 chr15:40700154 nonsynonymous SNV 0.960 5 20 hm7G_associated_SNPs_8536 0 0 1 0 2 IVD chr15:40700189 5'GT 40700189 Upstream 36bp 8188 chr8 87568356 87568356 1 + T G LUAD 87568357 + 87568337 87568377 41 TTGTGCTTTTGATTATTACTGATGGTGTGATCACAGACCTT TTGTGCTTTTGATTATTACGGATGGTGTGATCACAGACCTT < 41bp 0.836019509403057 0.577161393541364 NA NA prediction 0.517716231723387 Functional Loss - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87568357 chr8:87568356 synonymous SNV . 0 20 hm7G_associated_SNPs_8537 0 0 1 0 1 CPNE3 chr8:87568330 3'AG 87568330 Downstream 27bp 8189 chr4 49000548 49000548 1 + T G HNSC 49000549 + 49000529 49000569 41 TGGTTTCGTGGTACTGGTTTGATCTGGTGGGTTACAGGTAT TGGTTTCGTGGTACTGGTTGGATCTGGTGGGTTACAGGTAT < 41bp 0.857943000789547 0.59910005914343 NA NA prediction 0.517685883292234 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49000549 chr4:49000548 nonsynonymous SNV 0.308 1 20 hm7G_associated_SNPs_8538 0 0 0 0 2 CWH43 chr4:49000477 3'AG 49000477 Downstream 72bp 8190 chr4 49000548 49000548 1 + T G HNSC 49000549 + 49000529 49000569 41 TGGTTTCGTGGTACTGGTTTGATCTGGTGGGTTACAGGTAT TGGTTTCGTGGTACTGGTTGGATCTGGTGGGTTACAGGTAT < 41bp 0.857943000789547 0.59910005914343 NA NA prediction 0.517685883292234 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49000549 chr4:49000548 nonsynonymous SNV 0.308 1 20 hm7G_associated_SNPs_8538 0 0 0 0 2 CWH43 chr4:49000565 5'GT 49000565 Upstream 18bp 8191 chr11 67059504 67059504 1 + T G LUSC 67059505 + 67059485 67059525 41 GTGGACCATGACCGGCAGGTGGTGCATGTGGAGACACTGGG GTGGACCATGACCGGCAGGGGGTGCATGTGGAGACACTGGG < 41bp 0.758834259245291 0.429950839010039 NA NA prediction 0.517668518490582 Functional Loss - ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67059505 chr11:67059504 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_8539 0 0 1 0 1 ANKRD13D chr11:67059462 3'AG 67059462 Downstream 43bp 8192 chr3 101575996 101575996 1 + T G ESCA 101575997 + 101575977 101576017 41 ATTCGCCTCTTTTTGGAGCTGCCCAGTTGCCTGTCTTTTGT ATTCGCCTCTTTTTGGAGCGGCCCAGTTGCCTGTCTTTTGT < 41bp 0.758742756272929 0.434313250476384 NA NA prediction 0.517485512545858 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101575997 chr3:101575996 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_8540 0 0 1 0 2 NFKBIZ chr3:101575917 3'AG 101575917 Downstream 80bp 8193 chr3 101575996 101575996 1 + T G ESCA 101575997 + 101575977 101576017 41 ATTCGCCTCTTTTTGGAGCTGCCCAGTTGCCTGTCTTTTGT ATTCGCCTCTTTTTGGAGCGGCCCAGTTGCCTGTCTTTTGT < 41bp 0.758742756272929 0.434313250476384 NA NA prediction 0.517485512545858 Functional Loss - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101575997 chr3:101575996 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_8540 0 0 1 0 2 NFKBIZ chr3:101576027 5'GT 101576027 Upstream 32bp 8194 chr1 47842447 47842447 1 + T G rs185243869 47842448 + 47842428 47842468 41 GAAGGCATCCTTGAAATCATGCTTGAATATTGCTTTGATAG GAAGGCATCCTTGAAATCAGGCTTGAATATTGCTTTGATAG < 41bp 0.758742723863086 0.477536893471023 NA NA prediction 0.517485447726173 Functional Loss - CMPK1 ENSG00000162368 UTR3 Human protein_coding chr1:47842448 chr1:47842447 . . 0 20 hm7G_associated_SNPs_8541 0 0 1 1 1 CMPK1 chr1:47842376 3'AG 47842376 Downstream 72bp 8195 chr9 101816859 101816859 1 + T G OV 101816860 + 101816840 101816880 41 GTATGTGTTTGGTGGCAGGTGTTAAAGGAGAGAAAGGATCC GTATGTGTTTGGTGGCAGGGGTTAAAGGAGAGAAAGGATCC < 41bp 0.851335923747071 0.592627949217061 NA NA prediction 0.51741594906002 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101816860 chr9:101816859 synonymous SNV . 0 20 hm7G_associated_SNPs_8542 0 0 0 0 2 COL15A1 chr9:101816858 3'AG 101816858 Downstream 2bp 8196 chr9 101816859 101816859 1 + T G OV 101816860 + 101816840 101816880 41 GTATGTGTTTGGTGGCAGGTGTTAAAGGAGAGAAAGGATCC GTATGTGTTTGGTGGCAGGGGTTAAAGGAGAGAAAGGATCC < 41bp 0.851335923747071 0.592627949217061 NA NA prediction 0.51741594906002 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101816860 chr9:101816859 synonymous SNV . 0 20 hm7G_associated_SNPs_8542 0 0 0 0 2 COL15A1 chr9:101816938 5'GT 101816938 Upstream 80bp 8197 chr1 150054906 150054906 1 + T G CESC 150054907 + 150054887 150054927 41 GTCAGTGAACGGAATCTGCTGGAGGTTTCAGAGGTTGAGCA GTCAGTGAACGGAATCTGCGGGAGGTTTCAGAGGTTGAGCA < 41bp 0.869159841551592 0.610595010141331 NA NA prediction 0.517129662820523 Functional Loss - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150054907 chr1:150054906 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8545 0 0 1 0 1 VPS45 chr1:150054967 5'GT 150054967 Upstream 62bp 8198 chrX 70680548 70680548 1 + T G GBM 70680549 + 70680529 70680569 41 AGACCCAAACAACCCCGCATGCTTCAGGAGAACACAAGGAT AGACCCAAACAACCCCGCAGGCTTCAGGAGAACACAAGGAT < 41bp 0.758544805763136 0.439969322923579 NA NA prediction 0.517089611526272 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70680549 chrX:70680548 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_8546 0 0 1 0 1 TAF1 chrX:70680476 3'AG 70680476 Downstream 73bp 8199 chr12 101680113 101680113 1 + T G LUSC 101680114 + 101680094 101680134 41 TCCAGTTTGGTTGTACAGTTGGCACGAGATCTGCAGATGGA TCCAGTTTGGTTGTACAGTGGGCACGAGATCTGCAGATGGA < 41bp 0.758486171610996 0.449409503987 NA NA prediction 0.516972343221992 Functional Loss - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101680114 chr12:101680113 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8547 0 0 0 0 1 UTP20 chr12:101680099 3'AG 101680099 Downstream 15bp 8200 chr6 84649908 84649908 1 + T G UCS 84649909 + 84649889 84649929 41 TACTGAATTATGCTTTGACTGATATACCCAGTCTCAGGTAT TACTGAATTATGCTTTGACGGATATACCCAGTCTCAGGTAT < 41bp 0.758358653298559 0.447660536880523 NA NA prediction 0.516717306597119 Functional Loss - CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84649909 chr6:84649908 synonymous SNV . 0 20 hm7G_associated_SNPs_8549 0 0 0 0 1 CYB5R4 chr6:84649925 5'GT 84649925 Upstream 18bp 8201 chr10 95400718 95400718 1 + T G UCEC 95400719 + 95400699 95400739 41 ACACAGATCTCGAAGCCTTTGCCATGCTTGCTGCTGCTTTC ACACAGATCTCGAAGCCTTGGCCATGCTTGCTGCTGCTTTC < 41bp 0.758354231524515 0.423832181074306 NA NA prediction 0.516708463049031 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400719 chr10:95400718 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8550 0 0 0 0 2 PDE6C chr10:95400677 3'AG 95400677 Downstream 42bp 8202 chr10 95400718 95400718 1 + T G UCEC 95400719 + 95400699 95400739 41 ACACAGATCTCGAAGCCTTTGCCATGCTTGCTGCTGCTTTC ACACAGATCTCGAAGCCTTGGCCATGCTTGCTGCTGCTTTC < 41bp 0.758354231524515 0.423832181074306 NA NA prediction 0.516708463049031 Functional Loss - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95400719 chr10:95400718 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8550 0 0 0 0 2 PDE6C chr10:95400786 5'GT 95400786 Upstream 69bp 8203 chr12 10217429 10217429 1 + T G STAD 10217430 + 10217410 10217450 41 GACGCTGGCTTTGGCAAGATGGCTCCTCTCCTTCTCCTGGC GACGCTGGCTTTGGCAAGAGGGCTCCTCTCCTTCTCCTGGC < 41bp 0.758310373592671 0.43496996487828 NA NA prediction 0.516620747185342 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10217430 chr12:10217429 nonsynonymous SNV 0.349 3 20 hm7G_associated_SNPs_8553 0 0 0 0 2 CLEC9A chr12:10217331 3'AG 10217331 Downstream 99bp 8204 chr12 10217429 10217429 1 + T G STAD 10217430 + 10217410 10217450 41 GACGCTGGCTTTGGCAAGATGGCTCCTCTCCTTCTCCTGGC GACGCTGGCTTTGGCAAGAGGGCTCCTCTCCTTCTCCTGGC < 41bp 0.758310373592671 0.43496996487828 NA NA prediction 0.516620747185342 Functional Loss - CLEC9A ENSG00000197992 CDS Human protein_coding chr12:10217430 chr12:10217429 nonsynonymous SNV 0.349 3 20 hm7G_associated_SNPs_8553 0 0 0 0 2 CLEC9A chr12:10217452 5'GT 10217452 Upstream 24bp 8205 chr16 57762336 57762336 1 + T G BRCA 57762337 + 57762317 57762357 41 GAAGAGCACCTGCGGCAGGTGGAGACCCAGCTGGACTACCT GAAGAGCACCTGCGGCAGGGGGAGACCCAGCTGGACTACCT < 41bp 0.874324714001706 0.616064684643797 NA NA prediction 0.516520058715818 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57762337 chr16:57762336 nonsynonymous SNV 0.887 0 20 hm7G_associated_SNPs_8554 0 0 0 0 1 DRC7 chr16:57762302 3'AG 57762302 Downstream 35bp 8206 chr11 65984200 65984200 1 + T G SKCM 65984201 + 65984181 65984221 41 GACGAAGATCTCCGGAAAGTGAAGAAGACCCGGAGGAAACT GACGAAGATCTCCGGAAAGGGAAGAAGACCCGGAGGAAACT < 41bp 0.758215719919294 0.422879326326642 NA NA prediction 0.516431439838589 Functional Loss - PACS1 ENSG00000175115 CDS Human protein_coding chr11:65984201 chr11:65984200 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_8558 0 0 1 0 1 PACS1 chr11:65984166 3'AG 65984166 Downstream 35bp 8207 chr12 65632478 65632478 1 + T G UCEC 65632479 + 65632459 65632499 41 TTTGGCCCTGAGGAAGAATTGACAAATATAACTGATGTGCA TTTGGCCCTGAGGAAGAATGGACAAATATAACTGATGTGCA < 41bp 0.852336113806452 0.594135441344419 NA NA prediction 0.516401344924065 Functional Loss - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65632479 chr12:65632478 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8559 0 0 1 0 1 LEMD3 chr12:65632449 3'AG 65632449 Downstream 30bp 8208 chr1 234509358 234509358 1 + T G UCEC 234509359 + 234509339 234509379 41 CGCGCCCTCCACCGCCGGTTGGTGGCCTGCGTGACAGTTTC CGCGCCCTCCACCGCCGGTGGGTGGCCTGCGTGACAGTTTC < 41bp 0.771846205232905 0.513676954730509 NA NA prediction 0.516338501004792 Functional Loss - COA6 ENSG00000168275 CDS Human protein_coding chr1:234509359 chr1:234509358 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_8560 0 0 1 0 1 COA6 chr1:234509424 5'GT 234509424 Upstream 67bp 8209 chr10 102305767 102305767 1 + T G UCEC 102305768 + 102305748 102305788 41 GTGGTTGGTTACGAAACAGTGGTTGGCCCTGGTGATGTTCT GTGGTTGGTTACGAAACAGGGGTTGGCCCTGGTGATGTTCT < 41bp 0.87013553723869 0.612005689982134 NA NA prediction 0.516259694513112 Functional Loss - HIF1AN ENSG00000166135 CDS Human protein_coding chr10:102305768 chr10:102305767 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8561 0 0 1 0 2 HIF1AN chr10:102305700 3'AG 102305700 Downstream 68bp 8210 chr10 102305767 102305767 1 + T G UCEC 102305768 + 102305748 102305788 41 GTGGTTGGTTACGAAACAGTGGTTGGCCCTGGTGATGTTCT GTGGTTGGTTACGAAACAGGGGTTGGCCCTGGTGATGTTCT < 41bp 0.87013553723869 0.612005689982134 NA NA prediction 0.516259694513112 Functional Loss - HIF1AN ENSG00000166135 CDS Human protein_coding chr10:102305768 chr10:102305767 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8561 0 0 1 0 2 HIF1AN chr10:102305806 5'GT 102305806 Upstream 40bp 8211 chr14 65527939 65527939 1 + T G LIHC 65527940 + 65527920 65527960 41 AACATTGGACCAGACAAGGTGATCCAGGCCACTACATACTT AACATTGGACCAGACAAGGGGATCCAGGCCACTACATACTT < 41bp 0.758091865717387 0.45068679128075 NA NA prediction 0.516183731434774 Functional Loss - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65527940 chr14:65527939 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8563 0 0 0 0 1 CHURC1-FNTB;FNTB chr14:65527899 3'AG 65527899 Downstream 41bp 8212 chr17 7249567 7249567 1 + T G UCEC 7249568 + 7249548 7249588 41 TTCCTTCTCTTACAGACGCTGGTTCACCATTCAGAGCAACC TTCCTTCTCTTACAGACGCGGGTTCACCATTCAGAGCAACC < 41bp 0.871150988177137 0.613112107875708 NA NA prediction 0.516077760602858 Functional Loss - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7249568 chr17:7249567 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8566 0 0 0 0 2 ACAP1 chr17:7249563 3'AG 7249563 Downstream 5bp 8213 chr17 7249567 7249567 1 + T G UCEC 7249568 + 7249548 7249588 41 TTCCTTCTCTTACAGACGCTGGTTCACCATTCAGAGCAACC TTCCTTCTCTTACAGACGCGGGTTCACCATTCAGAGCAACC < 41bp 0.871150988177137 0.613112107875708 NA NA prediction 0.516077760602858 Functional Loss - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7249568 chr17:7249567 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8566 0 0 0 0 2 ACAP1 chr17:7249614 5'GT 7249614 Upstream 48bp 8214 chr1 173807358 173807358 1 + T G ESCA 173807359 + 173807339 173807379 41 TTGCCCGATGTTATCGAGATGAAGGTTCAAGACCAGACAGA TTGCCCGATGTTATCGAGAGGAAGGTTCAAGACCAGACAGA < 41bp 0.860133812345109 0.602156300891959 NA NA prediction 0.515955022906301 Functional Loss - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173807359 chr1:173807358 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8570 0 0 1 0 2 DARS2 chr1:173807328 3'AG 173807328 Downstream 31bp 8215 chr1 173807358 173807358 1 + T G ESCA 173807359 + 173807339 173807379 41 TTGCCCGATGTTATCGAGATGAAGGTTCAAGACCAGACAGA TTGCCCGATGTTATCGAGAGGAAGGTTCAAGACCAGACAGA < 41bp 0.860133812345109 0.602156300891959 NA NA prediction 0.515955022906301 Functional Loss - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173807359 chr1:173807358 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8570 0 0 1 0 2 DARS2 chr1:173807397 5'GT 173807397 Upstream 40bp 8216 chr8 22475909 22475909 1 + T G UCEC 22475910 + 22475890 22475930 41 TCCCCTTAGACTGTCTGCTTGCTTTTGTGTTCTTTGATGCC TCCCCTTAGACTGTCTGCTGGCTTTTGTGTTCTTTGATGCC < 41bp 0.757666674390264 0.417813234222443 NA NA prediction 0.515333348780528 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475910 chr8:22475909 synonymous SNV . 0 20 hm7G_associated_SNPs_8577 0 0 1 0 2 CCAR2 chr8:22475862 3'AG 22475862 Downstream 48bp 8217 chr8 22475909 22475909 1 + T G UCEC 22475910 + 22475890 22475930 41 TCCCCTTAGACTGTCTGCTTGCTTTTGTGTTCTTTGATGCC TCCCCTTAGACTGTCTGCTGGCTTTTGTGTTCTTTGATGCC < 41bp 0.757666674390264 0.417813234222443 NA NA prediction 0.515333348780528 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475910 chr8:22475909 synonymous SNV . 0 20 hm7G_associated_SNPs_8577 0 0 1 0 2 CCAR2 chr8:22476008 5'GT 22476008 Upstream 100bp 8218 chr1 231403518 231403518 1 + T G BRCA 231403519 + 231403499 231403539 41 CAAATTGAAAACATGGTTTTGAGCCCCTGGACCCTAATAGT CAAATTGAAAACATGGTTTGGAGCCCCTGGACCCTAATAGT < 41bp 0.757630405213908 0.438068213821661 NA NA prediction 0.515260810427816 Functional Loss - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231403519 chr1:231403518 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_8578 0 0 1 0 1 GNPAT chr1:231403426 3'AG 231403426 Downstream 93bp 8219 chr21 41300978 41300978 1 + T G SKCM 41300979 + 41300959 41300999 41 GAGACAGAACGTGCAGCGGTGGCCATTCAGTCTCAGTTCAG GAGACAGAACGTGCAGCGGGGGCCATTCAGTCTCAGTTCAG < 41bp 0.852862948884904 0.595253879091337 NA NA prediction 0.515218139587134 Functional Loss - PCP4 ENSG00000183036 CDS Human protein_coding chr21:41300979 chr21:41300978 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8579 0 0 0 0 1 PCP4 chr21:41300909 3'AG 41300909 Downstream 70bp 8220 chr17 72366762 72366762 1 + T G SKCM 72366763 + 72366743 72366783 41 GCAGAGAGGTCCCCGTGTGTGGCTGGCGTCATCCCTGTCAT GCAGAGAGGTCCCCGTGTGGGGCTGGCGTCATCCCTGTCAT < 41bp 0.757591074100428 0.414988000483834 NA NA prediction 0.515182148200856 Functional Loss - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72366763 chr17:72366762 nonsynonymous SNV 0.934 2 20 hm7G_associated_SNPs_8580 0 0 0 0 1 GPR142 chr17:72366818 5'GT 72366818 Upstream 57bp 8221 chrX 100805631 100805631 1 + T G rs7055900 100805632 + 100805612 100805652 41 AGGAGGACGAGGTTCTGCCTGGATCCCAGCAGGTTTGTGTG AGGAGGACGAGGTTCTGCCGGGATCCCAGCAGGTTTGTGTG < 41bp 0.842031032166067 0.584448338372313 NA NA prediction 0.515165387587508 Functional Loss - ARMCX1 ENSG00000126947 UTR5 Human protein_coding chrX:100805632 chrX:100805631 . . 0 20 hm7G_associated_SNPs_8581 0 0 0 0 1 ARMCX1 chrX:100805643 5'GT 100805643 Upstream 13bp 8222 chr1 192128428 192128428 1 + T G OV 192128429 + 192128409 192128449 41 ACACCCGCTCCAGTAGATCTGGGCACTTGGCCAAAGAAACA ACACCCGCTCCAGTAGATCGGGGCACTTGGCCAAAGAAACA < 41bp 0.820793254116499 0.56321544478974 NA NA prediction 0.515155618653517 Functional Loss - RGS18 ENSG00000150681 CDS Human protein_coding chr1:192128429 chr1:192128428 synonymous SNV . 0 20 hm7G_associated_SNPs_8582 0 0 0 0 2 RGS18 chr1:192128350 3'AG 192128350 Downstream 79bp 8223 chr1 192128428 192128428 1 + T G OV 192128429 + 192128409 192128449 41 ACACCCGCTCCAGTAGATCTGGGCACTTGGCCAAAGAAACA ACACCCGCTCCAGTAGATCGGGGCACTTGGCCAAAGAAACA < 41bp 0.820793254116499 0.56321544478974 NA NA prediction 0.515155618653517 Functional Loss - RGS18 ENSG00000150681 CDS Human protein_coding chr1:192128429 chr1:192128428 synonymous SNV . 0 20 hm7G_associated_SNPs_8582 0 0 0 0 2 RGS18 chr1:192128451 5'GT 192128451 Upstream 24bp 8224 chr11 55655690 55655690 1 + T G COAD 55655691 + 55655671 55655711 41 AGCTTTTAAGAGGAATGTATGAGGATCTGAAGCAAATGTGC AGCTTTTAAGAGGAATGTAGGAGGATCTGAAGCAAATGTGC < 41bp 0.757410530915381 0.448543604747472 NA NA prediction 0.514821061830763 Functional Loss - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55655691 chr11:55655690 stopgain 0.002 0 20 hm7G_associated_SNPs_8587 0 0 0 0 1 TRIM51 chr11:55655738 5'GT 55655738 Upstream 49bp 8225 chr5 129072766 129072766 1 + T G STAD 129072767 + 129072747 129072787 41 TTCTGTTTCACAGCTGCTCTGACTTTCAAGTGCCTGGGAGA TTCTGTTTCACAGCTGCTCGGACTTTCAAGTGCCTGGGAGA < 41bp 0.757397760786388 0.447841619128472 NA NA prediction 0.514795521572776 Functional Loss - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:129072767 chr5:129072766 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_8588 0 0 0 0 1 ADAMTS19 chr5:129072760 3'AG 129072760 Downstream 7bp 8226 chr11 45203364 45203364 1 + T G UCEC 45203365 + 45203345 45203385 41 GCCCAGACCAATGCAGCCGTGGGGGATATGGTGACGGTGGT GCCCAGACCAATGCAGCCGGGGGGGATATGGTGACGGTGGT < 41bp 0.757396408063004 0.424096330110989 NA NA prediction 0.514792816126008 Functional Loss - PRDM11 ENSG00000019485 CDS Human protein_coding chr11:45203365 chr11:45203364 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_8589 0 0 1 0 2 PRDM11 chr11:45203312 3'AG 45203312 Downstream 53bp 8227 chr11 45203364 45203364 1 + T G UCEC 45203365 + 45203345 45203385 41 GCCCAGACCAATGCAGCCGTGGGGGATATGGTGACGGTGGT GCCCAGACCAATGCAGCCGGGGGGGATATGGTGACGGTGGT < 41bp 0.757396408063004 0.424096330110989 NA NA prediction 0.514792816126008 Functional Loss - PRDM11 ENSG00000019485 CDS Human protein_coding chr11:45203365 chr11:45203364 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_8589 0 0 1 0 2 PRDM11 chr11:45203436 5'GT 45203436 Upstream 73bp 8228 chr19 17654235 17654235 1 + T G SARC 17654236 + 17654216 17654256 41 GAGAGAGTCAGGGGGCGCGTGCTGAAGGTGTGTTCTGTGGG GAGAGAGTCAGGGGGCGCGGGCTGAAGGTGTGTTCTGTGGG < 41bp 0.869376251497703 0.61199706995282 NA NA prediction 0.514758363089765 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17654236 chr19:17654235 nonsynonymous SNV 0.863 3 20 hm7G_associated_SNPs_8590 0 0 0 0 1 FAM129C chr19:17654242 5'GT 17654242 Upstream 8bp 8229 chr16 68283295 68283295 1 + T G CESC 68283296 + 68283276 68283316 41 AGCTACTTCACAATCTGGCTGAACCTGGAACTGCTGCTGCC AGCTACTTCACAATCTGGCGGAACCTGGAACTGCTGCTGCC < 41bp 0.851587013395803 0.594227604379922 NA NA prediction 0.514718818031761 Functional Loss - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68283296 chr16:68283295 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8591 0 0 1 0 1 PLA2G15 chr16:68283349 5'GT 68283349 Upstream 55bp 8230 chr16 2880774 2880774 1 + T G HNSC 2880775 + 2880755 2880795 41 TCACAGGGCTGCGGGTGTCTGTAGGTCTTCTCCTGGTGAAA TCACAGGGCTGCGGGTGTCGGTAGGTCTTCTCCTGGTGAAA < 41bp 0.757235240560138 0.438341692912164 NA NA prediction 0.514470481120277 Functional Loss - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880775 chr16:2880774 synonymous SNV . 0 20 hm7G_associated_SNPs_8595 0 0 0 0 2 ZG16B chr16:2880695 3'AG 2880695 Downstream 80bp 8231 chr16 2880774 2880774 1 + T G HNSC 2880775 + 2880755 2880795 41 TCACAGGGCTGCGGGTGTCTGTAGGTCTTCTCCTGGTGAAA TCACAGGGCTGCGGGTGTCGGTAGGTCTTCTCCTGGTGAAA < 41bp 0.757235240560138 0.438341692912164 NA NA prediction 0.514470481120277 Functional Loss - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880775 chr16:2880774 synonymous SNV . 0 20 hm7G_associated_SNPs_8595 0 0 0 0 2 ZG16B chr16:2880797 5'GT 2880797 Upstream 24bp 8232 chr1 230916057 230916057 1 + T G rs79844715 230916058 + 230916038 230916078 41 AGATTTGGTGCCAATGTGCTGACAATCGGCTATGCCATTTA AGATTTGGTGCCAATGTGCGGACAATCGGCTATGCCATTTA < 41bp 0.757085537307532 0.424781933385533 NA NA prediction 0.514171074615063 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230916058 chr1:230916057 nonsynonymous SNV 0.093 4 20 hm7G_associated_SNPs_8598 0 0 0 0 1 CAPN9 chr1:230916082 5'GT 230916082 Upstream 26bp 8233 chr12 52385763 52385763 1 + T G LUSC 52385764 + 52385744 52385784 41 TCCCAACATCCCCAACTGGTGGCAGAGTTATGAGGTAAGAA TCCCAACATCCCCAACTGGGGGCAGAGTTATGAGGTAAGAA < 41bp 0.873777947963173 0.616773231234556 NA NA prediction 0.514009433457236 Functional Loss - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52385764 chr12:52385763 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8600 0 0 1 0 1 ACVR1B chr12:52385777 5'GT 52385777 Upstream 15bp 8234 chr5 78602209 78602209 1 + T G COAD 78602210 + 78602190 78602230 41 ATTTACAGGAAATATGTATTGCAAAACACAATGAAAAAATC ATTTACAGGAAATATGTATGGCAAAACACAATGAAAAAATC < 41bp 0.756947165924475 0.444704860772439 NA NA prediction 0.513894331848949 Functional Loss - JMY ENSG00000152409 CDS Human protein_coding chr5:78602210 chr5:78602209 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8603 0 0 0 0 2 JMY chr5:78602198 3'AG 78602198 Downstream 12bp 8235 chr5 78602209 78602209 1 + T G COAD 78602210 + 78602190 78602230 41 ATTTACAGGAAATATGTATTGCAAAACACAATGAAAAAATC ATTTACAGGAAATATGTATGGCAAAACACAATGAAAAAATC < 41bp 0.756947165924475 0.444704860772439 NA NA prediction 0.513894331848949 Functional Loss - JMY ENSG00000152409 CDS Human protein_coding chr5:78602210 chr5:78602209 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8603 0 0 0 0 2 JMY chr5:78602284 5'GT 78602284 Upstream 76bp 8236 chr12 104326636 104326636 1 + T G UCEC 104326637 + 104326617 104326657 41 AACTGATTTCAAATGCTTCTGATGCTTTAGATAAGATAAGG AACTGATTTCAAATGCTTCGGATGCTTTAGATAAGATAAGG < 41bp 0.756880465513697 0.436381085401009 NA NA prediction 0.513760931027394 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104326637 chr12:104326636 synonymous SNV . 0 20 hm7G_associated_SNPs_8605 0 0 1 0 2 HSP90B1 chr12:104326604 3'AG 104326604 Downstream 33bp 8237 chr12 104326636 104326636 1 + T G UCEC 104326637 + 104326617 104326657 41 AACTGATTTCAAATGCTTCTGATGCTTTAGATAAGATAAGG AACTGATTTCAAATGCTTCGGATGCTTTAGATAAGATAAGG < 41bp 0.756880465513697 0.436381085401009 NA NA prediction 0.513760931027394 Functional Loss - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104326637 chr12:104326636 synonymous SNV . 0 20 hm7G_associated_SNPs_8605 0 0 1 0 2 HSP90B1 chr12:104326720 5'GT 104326720 Upstream 85bp 8238 chr16 14742400 14742400 1 + T G rs11546303 14742401 + 14742381 14742421 41 GGCCGAGCGAATCAGCAGATGGGAGGGGGATTCTTTTCCGG GGCCGAGCGAATCAGCAGAGGGGAGGGGGATTCTTTTCCGG < 41bp 0.756760195383128 0.417419852150981 NA NA prediction 0.513520390766256 Functional Loss - BFAR ENSG00000103429 CDS Human protein_coding chr16:14742401 chr16:14742400 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_8608 0 0 1 0 1 BFAR chr16:14742449 5'GT 14742449 Upstream 50bp 8239 chr1 186948448 186948448 1 + T G rs12720691 186948449 + 186948429 186948469 41 GACTCTTCTGGTATTTAGGTGTTCCAAGGGAAACTGAGGAA GACTCTTCTGGTATTTAGGGGTTCCAAGGGAAACTGAGGAA < 41bp 0.830848826304125 0.574103750840238 NA NA prediction 0.513490150927775 Functional Loss - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186948449 chr1:186948448 synonymous SNV . 0 20 hm7G_associated_SNPs_8609 0 0 0 0 1 PLA2G4A chr1:186948447 3'AG 186948447 Downstream 2bp 8240 chr21 33867339 33867339 1 + T G UCEC 33867340 + 33867320 33867360 41 TGTTTCCTGCCTTTCAGATTGCTTGTCTTACTCAGCTTTGC TGTTTCCTGCCTTTCAGATGGCTTGTCTTACTCAGCTTTGC < 41bp 0.756727168979465 0.422273584159193 NA NA prediction 0.513454337958931 Functional Loss - EVA1C ENSG00000166979 CDS Human protein_coding chr21:33867340 chr21:33867339 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_8610 0 0 1 2 1 EVA1C chr21:33867337 3'AG 33867337 Downstream 3bp 8241 chr19 34983992 34983992 1 + T G SKCM 34983993 + 34983973 34984013 41 CGTGGGTGAGAAAGTGTACTGCCAGGAGGACTTCCTGGTGA CGTGGGTGAGAAAGTGTACGGCCAGGAGGACTTCCTGGTGA < 41bp 0.873627011998727 0.616903026818784 NA NA prediction 0.513447970359886 Functional Loss - WTIP ENSG00000142279 CDS Human protein_coding chr19:34983993 chr19:34983992 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8611 0 0 1 0 2 WTIP chr19:34983942 3'AG 34983942 Downstream 51bp 8242 chr19 34983992 34983992 1 + T G SKCM 34983993 + 34983973 34984013 41 CGTGGGTGAGAAAGTGTACTGCCAGGAGGACTTCCTGGTGA CGTGGGTGAGAAAGTGTACGGCCAGGAGGACTTCCTGGTGA < 41bp 0.873627011998727 0.616903026818784 NA NA prediction 0.513447970359886 Functional Loss - WTIP ENSG00000142279 CDS Human protein_coding chr19:34983993 chr19:34983992 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8611 0 0 1 0 2 WTIP chr19:34984009 5'GT 34984009 Upstream 18bp 8243 chr14 74060592 74060592 1 + T G rs187102550 74060593 + 74060573 74060613 41 GAAGAAGCCGTATGCTACATGCTTCAACATCCCCAGGTTCT GAAGAAGCCGTATGCTACAGGCTTCAACATCCCCAGGTTCT < 41bp 0.862336949663017 0.605618341454337 NA NA prediction 0.513437216417359 Functional Loss - ACOT4 ENSG00000177465 CDS Human protein_coding chr14:74060593 chr14:74060592 nonsynonymous SNV 0.756 3 20 hm7G_associated_SNPs_8612 0 0 0 0 1 ACOT4 chr14:74060608 5'GT 74060608 Upstream 17bp 8244 chr2 97492658 97492658 1 + T G LUSC 97492659 + 97492639 97492679 41 TGTTCAAGGTGTCTGATGATGAATATAAAGTAACAATCTCG TGTTCAAGGTGTCTGATGAGGAATATAAAGTAACAATCTCG < 41bp 0.756694858529689 0.425140883778711 NA NA prediction 0.513389717059378 Functional Loss - CNNM3 ENSG00000168763 CDS Human protein_coding chr2:97492659 chr2:97492658 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8613 0 0 1 0 2 CNNM3 chr2:97492570 3'AG 97492570 Downstream 89bp 8245 chr2 97492658 97492658 1 + T G LUSC 97492659 + 97492639 97492679 41 TGTTCAAGGTGTCTGATGATGAATATAAAGTAACAATCTCG TGTTCAAGGTGTCTGATGAGGAATATAAAGTAACAATCTCG < 41bp 0.756694858529689 0.425140883778711 NA NA prediction 0.513389717059378 Functional Loss - CNNM3 ENSG00000168763 CDS Human protein_coding chr2:97492659 chr2:97492658 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8613 0 0 1 0 2 CNNM3 chr2:97492719 5'GT 97492719 Upstream 62bp 8246 chr7 55990862 55990862 1 + T G BRCA 55990863 + 55990843 55990883 41 TTGATGTTTCAGGAATCACTGACGTTTCAGGATGTGGCCGT TTGATGTTTCAGGAATCACGGACGTTTCAGGATGTGGCCGT < 41bp 0.864057083076501 0.607461492644308 NA NA prediction 0.513191180864386 Functional Loss - ZNF713 ENSG00000178665;ENSG00000249773 CDS Human other chr7:55990863 chr7:55990862 nonsynonymous SNV 0.966 1 20 hm7G_associated_SNPs_8615 0 0 0 0 1 ZNF713 chr7:55990855 3'AG 55990855 Downstream 8bp 8247 chr4 44685296 44685296 1 + T G COAD 44685297 + 44685277 44685317 41 AAAGGGTTGAAAACCAAATTGAGAAAGTGTTTGATATTCCA AAAGGGTTGAAAACCAAATGGAGAAAGTGTTTGATATTCCA < 41bp 0.756594817008658 0.441043726641986 NA NA prediction 0.513189634017315 Functional Loss - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44685297 chr4:44685296 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_8616 0 0 1 3 2 GUF1 chr4:44685252 3'AG 44685252 Downstream 45bp 8248 chr4 44685296 44685296 1 + T G COAD 44685297 + 44685277 44685317 41 AAAGGGTTGAAAACCAAATTGAGAAAGTGTTTGATATTCCA AAAGGGTTGAAAACCAAATGGAGAAAGTGTTTGATATTCCA < 41bp 0.756594817008658 0.441043726641986 NA NA prediction 0.513189634017315 Functional Loss - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44685297 chr4:44685296 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_8616 0 0 1 3 2 GUF1 chr4:44685335 5'GT 44685335 Upstream 40bp 8249 chr14 76243154 76243154 1 + T G COAD 76243155 + 76243135 76243175 41 GAAGAAGAGGAAGATGGGGTGAATATGGAAAACTTTCAGGA GAAGAAGAGGAAGATGGGGGGAATATGGAAAACTTTCAGGA < 41bp 0.75653962193147 0.439006776096402 NA NA prediction 0.513079243862939 Functional Loss - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76243155 chr14:76243154 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_8617 0 0 1 0 2 TTLL5 chr14:76243090 3'AG 76243090 Downstream 65bp 8250 chr14 76243154 76243154 1 + T G COAD 76243155 + 76243135 76243175 41 GAAGAAGAGGAAGATGGGGTGAATATGGAAAACTTTCAGGA GAAGAAGAGGAAGATGGGGGGAATATGGAAAACTTTCAGGA < 41bp 0.75653962193147 0.439006776096402 NA NA prediction 0.513079243862939 Functional Loss - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76243155 chr14:76243154 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_8617 0 0 1 0 2 TTLL5 chr14:76243193 5'GT 76243193 Upstream 40bp 8251 chr2 243056841 243056841 1 + T G LUSC 243056842 + 243056822 243056862 41 ATAATGAAGAGCATGAATATGCATCCAAAAAAAGAAAAAGG ATAATGAAGAGCATGAATAGGCATCCAAAAAAAGAAAAAGG < 41bp 0.80542813180649 0.548891074307868 NA NA prediction 0.513074114997244 Functional Loss - LINC01881 ENSG00000220804 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:243056842 chr2:243056841 . . 0 20 hm7G_associated_SNPs_8618 0 0 1 2 2 LINC01881 chr2:243056790 3'AG 243056790 Downstream 52bp 8252 chr2 243056841 243056841 1 + T G LUSC 243056842 + 243056822 243056862 41 ATAATGAAGAGCATGAATATGCATCCAAAAAAAGAAAAAGG ATAATGAAGAGCATGAATAGGCATCCAAAAAAAGAAAAAGG < 41bp 0.80542813180649 0.548891074307868 NA NA prediction 0.513074114997244 Functional Loss - LINC01881 ENSG00000220804 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:243056842 chr2:243056841 . . 0 20 hm7G_associated_SNPs_8618 0 0 1 2 2 LINC01881 chr2:243056892 5'GT 243056892 Upstream 52bp 8253 chr5 173370039 173370039 1 + T G KIRP 173370040 + 173370020 173370060 41 GACATGCAGCAAGGACATATGGGCGAAGGAGAGGTAACATT GACATGCAGCAAGGACATAGGGGCGAAGGAGAGGTAACATT < 41bp 0.828706432945128 0.572185548921798 NA NA prediction 0.513041768046659 Functional Loss - CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173370040 chr5:173370039 stopgain 1.000 1 20 hm7G_associated_SNPs_8619 0 0 1 0 2 CPEB4 chr5:173370029 3'AG 173370029 Downstream 11bp 8254 chr5 173370039 173370039 1 + T G KIRP 173370040 + 173370020 173370060 41 GACATGCAGCAAGGACATATGGGCGAAGGAGAGGTAACATT GACATGCAGCAAGGACATAGGGGCGAAGGAGAGGTAACATT < 41bp 0.828706432945128 0.572185548921798 NA NA prediction 0.513041768046659 Functional Loss - CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173370040 chr5:173370039 stopgain 1.000 1 20 hm7G_associated_SNPs_8619 0 0 1 0 2 CPEB4 chr5:173370052 5'GT 173370052 Upstream 14bp 8255 chr7 11078422 11078422 1 + T G KIRC 11078423 + 11078403 11078443 41 AAGAACTACAAAACCTGAATGGAAAACTTCGAAGTGAAGGA AAGAACTACAAAACCTGAAGGGAAAACTTCGAAGTGAAGGA < 41bp 0.75651392138411 0.438567206659826 NA NA prediction 0.51302784276822 Functional Loss - PHF14 ENSG00000106443 CDS Human protein_coding chr7:11078423 chr7:11078422 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8620 0 0 1 0 2 PHF14 chr7:11078387 3'AG 11078387 Downstream 36bp 8256 chr7 11078422 11078422 1 + T G KIRC 11078423 + 11078403 11078443 41 AAGAACTACAAAACCTGAATGGAAAACTTCGAAGTGAAGGA AAGAACTACAAAACCTGAAGGGAAAACTTCGAAGTGAAGGA < 41bp 0.75651392138411 0.438567206659826 NA NA prediction 0.51302784276822 Functional Loss - PHF14 ENSG00000106443 CDS Human protein_coding chr7:11078423 chr7:11078422 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8620 0 0 1 0 2 PHF14 chr7:11078482 5'GT 11078482 Upstream 61bp 8257 chrX 65409562 65409562 1 + T G UCEC 65409563 + 65409543 65409583 41 TTTGGGAATTTACCTGAGCTGAACATGTGTGCACAGAAACG TTTGGGAATTTACCTGAGCGGAACATGTGTGCACAGAAACG < 41bp 0.756456028099116 0.429984751699221 NA NA prediction 0.512912056198233 Functional Loss - HEPH ENSG00000089472 CDS Human protein_coding chrX:65409563 chrX:65409562 nonsynonymous SNV 0.956 5 20 hm7G_associated_SNPs_8622 0 0 1 0 1 HEPH chrX:65409526 3'AG 65409526 Downstream 37bp 8258 chr8 37686459 37686459 1 + T G LUSC 37686460 + 37686440 37686480 41 CCGGGCGCCTTCCTGGGCCTGGGGGAGCTGAAGCGTTTGTG CCGGGCGCCTTCCTGGGCCGGGGGGAGCTGAAGCGTTTGTG < 41bp 0.756430364029924 0.407196612574609 NA NA prediction 0.512860728059848 Functional Loss - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37686460 chr8:37686459 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_8623 0 0 0 0 2 ADGRA2 chr8:37686406 3'AG 37686406 Downstream 54bp 8259 chr8 37686459 37686459 1 + T G LUSC 37686460 + 37686440 37686480 41 CCGGGCGCCTTCCTGGGCCTGGGGGAGCTGAAGCGTTTGTG CCGGGCGCCTTCCTGGGCCGGGGGGAGCTGAAGCGTTTGTG < 41bp 0.756430364029924 0.407196612574609 NA NA prediction 0.512860728059848 Functional Loss - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37686460 chr8:37686459 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_8623 0 0 0 0 2 ADGRA2 chr8:37686477 5'GT 37686477 Upstream 19bp 8260 chr1 153741377 153741377 1 + T G DLBC 153741378 + 153741358 153741398 41 TTTCCATTTAGTTTCCAGATGAAACCTTGAGGAGCGGAGAG TTTCCATTTAGTTTCCAGAGGAAACCTTGAGGAGCGGAGAG < 41bp 0.863378487336116 0.606970783343791 NA NA prediction 0.512815407984651 Functional Loss - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153741378 chr1:153741377 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8625 0 0 1 0 2 INTS3 chr1:153741369 3'AG 153741369 Downstream 9bp 8261 chr1 153741377 153741377 1 + T G DLBC 153741378 + 153741358 153741398 41 TTTCCATTTAGTTTCCAGATGAAACCTTGAGGAGCGGAGAG TTTCCATTTAGTTTCCAGAGGAAACCTTGAGGAGCGGAGAG < 41bp 0.863378487336116 0.606970783343791 NA NA prediction 0.512815407984651 Functional Loss - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153741378 chr1:153741377 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8625 0 0 1 0 2 INTS3 chr1:153741437 5'GT 153741437 Upstream 61bp 8262 chr9 21837992 21837992 1 + T G SKCM 21837993 + 21837973 21838013 41 TCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAGGTGT TCCAATGGCTGAGCCGTTTGGCCCCAAAACGAGAGAGGTGT < 41bp 0.858991205452642 0.602599433374363 NA NA prediction 0.512783544156558 Functional Loss - MTAP ENSG00000099810 CDS Human protein_coding chr9:21837993 chr9:21837992 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8626 0 0 1 0 2 MTAP chr9:21837907 3'AG 21837907 Downstream 86bp 8263 chr9 21837992 21837992 1 + T G SKCM 21837993 + 21837973 21838013 41 TCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAGGTGT TCCAATGGCTGAGCCGTTTGGCCCCAAAACGAGAGAGGTGT < 41bp 0.858991205452642 0.602599433374363 NA NA prediction 0.512783544156558 Functional Loss - MTAP ENSG00000099810 CDS Human protein_coding chr9:21837993 chr9:21837992 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8626 0 0 1 0 2 MTAP chr9:21838009 5'GT 21838009 Upstream 18bp 8264 chr20 33033194 33033194 1 + T G PRAD 33033195 + 33033175 33033215 41 TGGAATCCGTCCGGAACTATGAACAATGGCAGCTACAGCGT TGGAATCCGTCCGGAACTAGGAACAATGGCAGCTACAGCGT < 41bp 0.86662483257028 0.610258459130473 NA NA prediction 0.512732746879615 Functional Loss - ITCH ENSG00000078747 CDS Human protein_coding chr20:33033195 chr20:33033194 stopgain 1.000 1 20 hm7G_associated_SNPs_8627 0 0 1 0 1 ITCH chr20:33033266 5'GT 33033266 Upstream 73bp 8265 chr2 148654067 148654067 1 + T G STAD 148654068 + 148654048 148654088 41 TTGGCTGGATGATATCAACTGCTATGACAGGTAAGAACACA TTGGCTGGATGATATCAACGGCTATGACAGGTAAGAACACA < 41bp 0.853335647975296 0.596986287297598 NA NA prediction 0.512698721355396 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148654068 chr2:148654067 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8628 0 0 1 0 1 ACVR2A chr2:148654077 5'GT 148654077 Upstream 11bp 8266 chr5 159854773 159854773 1 + T G SARC 159854774 + 159854754 159854794 41 CAGATTGCGCACCTCCCCTTGAGTGGAGTGCCTCTCATGAT CAGATTGCGCACCTCCCCTGGAGTGGAGTGCCTCTCATGAT < 41bp 0.865242818549107 0.608918216495731 NA NA prediction 0.512649204106751 Functional Loss - PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159854774 chr5:159854773 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8629 0 0 1 0 1 PTTG1 chr5:159854722 3'AG 159854722 Downstream 52bp 8267 chr11 64698015 64698015 1 + T G STAD 64698016 + 64697996 64698036 41 CAGTTCCTGGTTCGCGTCCTGATCCCCCTGCACTCTGTCAA CAGTTCCTGGTTCGCGTCCGGATCCCCCTGCACTCTGTCAA < 41bp 0.875816124146435 0.619658129798324 NA NA prediction 0.512315988696222 Functional Loss - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64698016 chr11:64698015 nonsynonymous SNV 0.802 4 20 hm7G_associated_SNPs_8631 0 0 0 0 2 PPP2R5B chr11:64697953 3'AG 64697953 Downstream 63bp 8268 chr11 64698015 64698015 1 + T G STAD 64698016 + 64697996 64698036 41 CAGTTCCTGGTTCGCGTCCTGATCCCCCTGCACTCTGTCAA CAGTTCCTGGTTCGCGTCCGGATCCCCCTGCACTCTGTCAA < 41bp 0.875816124146435 0.619658129798324 NA NA prediction 0.512315988696222 Functional Loss - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64698016 chr11:64698015 nonsynonymous SNV 0.802 4 20 hm7G_associated_SNPs_8631 0 0 0 0 2 PPP2R5B chr11:64698061 5'GT 64698061 Upstream 47bp 8269 chr12 52309829 52309829 1 + T G SKCM 52309830 + 52309810 52309850 41 ACCCCCACAGGCCTGGCTGTGATGCACTCACAGGGCAGCGA ACCCCCACAGGCCTGGCTGGGATGCACTCACAGGGCAGCGA < 41bp 0.879284371857387 0.623342349254453 NA NA prediction 0.511884045205867 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309830 chr12:52309829 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8636 0 0 0 0 1 ACVRL1 chr12:52309820 3'AG 52309820 Downstream 10bp 8270 chr3 121573624 121573624 1 + T G UCEC 121573625 + 121573605 121573645 41 TAACCATGATACTGGAGAATGTCGGCTAGAAAAACTCAGCA TAACCATGATACTGGAGAAGGTCGGCTAGAAAAACTCAGCA < 41bp 0.83019912385621 0.574429525657772 NA NA prediction 0.511539196396877 Functional Loss - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121573625 chr3:121573624 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8639 0 0 1 0 1 EAF2 chr3:121573670 5'GT 121573670 Upstream 47bp 8271 chr6 27215713 27215713 1 + T G UCEC 27215714 + 27215694 27215734 41 AGCAGTTTCAGGAGAGCTCTGCCCAGGGCCTGGGCCTGAGC AGCAGTTTCAGGAGAGCTCGGCCCAGGGCCTGGGCCTGAGC < 41bp 0.875448267952631 0.619762664475945 NA NA prediction 0.511371206953372 Functional Loss - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27215714 chr6:27215713 synonymous SNV . 0 20 hm7G_associated_SNPs_8640 0 0 0 0 1 PRSS16 chr6:27215661 3'AG 27215661 Downstream 53bp 8272 chr6 160196296 160196296 1 + T G rs41292466 160196297 + 160196277 160196317 41 CAGAGAATGCACAGAAAGCTGGCCATTTTGACAAAGAGATT CAGAGAATGCACAGAAAGCGGGCCATTTTGACAAAGAGATT < 41bp 0.87464785869916 0.61910816244089 NA NA prediction 0.511079392516541 Functional Loss - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160196297 chr6:160196296 synonymous SNV . 0 20 hm7G_associated_SNPs_8643 0 0 1 0 2 ACAT2 chr6:160196202 3'AG 160196202 Downstream 95bp 8273 chr6 160196296 160196296 1 + T G rs41292466 160196297 + 160196277 160196317 41 CAGAGAATGCACAGAAAGCTGGCCATTTTGACAAAGAGATT CAGAGAATGCACAGAAAGCGGGCCATTTTGACAAAGAGATT < 41bp 0.87464785869916 0.61910816244089 NA NA prediction 0.511079392516541 Functional Loss - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160196297 chr6:160196296 synonymous SNV . 0 20 hm7G_associated_SNPs_8643 0 0 1 0 2 ACAT2 chr6:160196345 5'GT 160196345 Upstream 50bp 8274 chr2 32314592 32314592 1 + T G UCEC 32314593 + 32314573 32314613 41 TTAATTTTTTTCTTTCAGGTGAACAGTGTGAAAGAGCTAGA TTAATTTTTTTCTTTCAGGGGAACAGTGTGAAAGAGCTAGA < 41bp 0.837842294840716 0.582373840260478 NA NA prediction 0.510936909160476 Functional Loss - SPAST ENSG00000021574 CDS Human protein_coding chr2:32314593 chr2:32314592 synonymous SNV . 0 20 hm7G_associated_SNPs_8644 0 0 0 0 2 SPAST chr2:32314591 3'AG 32314591 Downstream 2bp 8275 chr2 32314592 32314592 1 + T G UCEC 32314593 + 32314573 32314613 41 TTAATTTTTTTCTTTCAGGTGAACAGTGTGAAAGAGCTAGA TTAATTTTTTTCTTTCAGGGGAACAGTGTGAAAGAGCTAGA < 41bp 0.837842294840716 0.582373840260478 NA NA prediction 0.510936909160476 Functional Loss - SPAST ENSG00000021574 CDS Human protein_coding chr2:32314593 chr2:32314592 synonymous SNV . 0 20 hm7G_associated_SNPs_8644 0 0 0 0 2 SPAST chr2:32314674 5'GT 32314674 Upstream 83bp 8276 chrX 1748782 1748782 1 + T G PRAD 1748783 + 1748763 1748803 41 AGCGTCAACGGGAGAAGCGTGCTGACCGCCTTTGACCTGTC AGCGTCAACGGGAGAAGCGGGCTGACCGCCTTTGACCTGTC < 41bp 0.881646359757332 0.626286332173682 NA NA prediction 0.5107200551673 Functional Loss - ASMT ENSG00000196433 CDS Human protein_coding chrX:1748783 chrX:1748782 nonsynonymous SNV 0.023 3 20 hm7G_associated_SNPs_8647 0 0 0 0 2 ASMT chrX:1748714 3'AG 1748714 Downstream 69bp 8277 chrX 1748782 1748782 1 + T G PRAD 1748783 + 1748763 1748803 41 AGCGTCAACGGGAGAAGCGTGCTGACCGCCTTTGACCTGTC AGCGTCAACGGGAGAAGCGGGCTGACCGCCTTTGACCTGTC < 41bp 0.881646359757332 0.626286332173682 NA NA prediction 0.5107200551673 Functional Loss - ASMT ENSG00000196433 CDS Human protein_coding chrX:1748783 chrX:1748782 nonsynonymous SNV 0.023 3 20 hm7G_associated_SNPs_8647 0 0 0 0 2 ASMT chrX:1748832 5'GT 1748832 Upstream 51bp 8278 chr5 75969357 75969357 1 + T G UCEC 75969358 + 75969338 75969378 41 GAGGCTTCCATTGAGAACCTGAGAAGGGTCACCGACAAAGT GAGGCTTCCATTGAGAACCGGAGAAGGGTCACCGACAAAGT < 41bp 0.755357188616174 0.439371649414487 NA NA prediction 0.510714377232349 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75969358 chr5:75969357 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8648 0 0 1 0 2 IQGAP2 chr5:75969274 3'AG 75969274 Downstream 84bp 8279 chr5 75969357 75969357 1 + T G UCEC 75969358 + 75969338 75969378 41 GAGGCTTCCATTGAGAACCTGAGAAGGGTCACCGACAAAGT GAGGCTTCCATTGAGAACCGGAGAAGGGTCACCGACAAAGT < 41bp 0.755357188616174 0.439371649414487 NA NA prediction 0.510714377232349 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75969358 chr5:75969357 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8648 0 0 1 0 2 IQGAP2 chr5:75969414 5'GT 75969414 Upstream 58bp 8280 chr12 10167859 10167859 1 + T G rs147173694 10167860 + 10167840 10167880 41 TTCCTTTTCAGACCACAGATGTAATCCATGTCCTAAGATGT TTCCTTTTCAGACCACAGAGGTAATCCATGTCCTAAGATGT < 41bp 0.755238853991807 0.458792360793156 NA NA prediction 0.510477707983614 Functional Loss - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10167860 chr12:10167859 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8649 0 0 0 0 1 CLEC12B chr12:10167851 3'AG 10167851 Downstream 9bp 8281 chr11 114576534 114576534 1 + T G UCEC 114576535 + 114576515 114576555 41 TAAAAAAGAACTGCCAGATTGGAATGAAGACTCCTTTCCCC TAAAAAAGAACTGCCAGATGGGAATGAAGACTCCTTTCCCC < 41bp 0.853595161256216 0.598436065483826 NA NA prediction 0.510318191544781 Functional Loss - NXPE2 ENSG00000204361 CDS Human protein_coding chr11:114576535 chr11:114576534 nonsynonymous SNV 0.042 0 20 hm7G_associated_SNPs_8650 0 0 0 0 1 NXPE2 chr11:114576503 3'AG 114576503 Downstream 32bp 8282 chr10 15091670 15091670 1 + T G GBM 15091671 + 15091651 15091691 41 ACTGCTTATACAAAAACCCTGAGGCAACTTTTAAGCTGATT ACTGCTTATACAAAAACCCGGAGGCAACTTTTAAGCTGATT < 41bp 0.755158580328755 0.432358161643031 NA NA prediction 0.51031716065751 Functional Loss - OLAH ENSG00000152463 CDS Human protein_coding chr10:15091671 chr10:15091670 synonymous SNV . 0 20 hm7G_associated_SNPs_8651 0 0 0 0 2 OLAH chr10:15091634 3'AG 15091634 Downstream 37bp 8283 chr10 15091670 15091670 1 + T G GBM 15091671 + 15091651 15091691 41 ACTGCTTATACAAAAACCCTGAGGCAACTTTTAAGCTGATT ACTGCTTATACAAAAACCCGGAGGCAACTTTTAAGCTGATT < 41bp 0.755158580328755 0.432358161643031 NA NA prediction 0.51031716065751 Functional Loss - OLAH ENSG00000152463 CDS Human protein_coding chr10:15091671 chr10:15091670 synonymous SNV . 0 20 hm7G_associated_SNPs_8651 0 0 0 0 2 OLAH chr10:15091764 5'GT 15091764 Upstream 95bp 8284 chr9 34648807 34648807 1 + T G LUAD 34648808 + 34648788 34648828 41 GTTAGTACTGGTCCCCTTCTGGGCAACATGGCCCTACCAGA GTTAGTACTGGTCCCCTTCGGGGCAACATGGCCCTACCAGA < 41bp 0.755152219754207 0.410661216388097 NA NA prediction 0.510304439508413 Functional Loss - GALT ENSG00000213930 CDS Human protein_coding chr9:34648808 chr9:34648807 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8652 0 0 1 0 2 GALT chr9:34648759 3'AG 34648759 Downstream 49bp 8285 chr9 34648807 34648807 1 + T G LUAD 34648808 + 34648788 34648828 41 GTTAGTACTGGTCCCCTTCTGGGCAACATGGCCCTACCAGA GTTAGTACTGGTCCCCTTCGGGGCAACATGGCCCTACCAGA < 41bp 0.755152219754207 0.410661216388097 NA NA prediction 0.510304439508413 Functional Loss - GALT ENSG00000213930 CDS Human protein_coding chr9:34648808 chr9:34648807 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8652 0 0 1 0 2 GALT chr9:34648891 5'GT 34648891 Upstream 85bp 8286 chr20 36687855 36687855 1 + T G COAD 36687856 + 36687836 36687876 41 CCGCATCAGGGGATGCTACTGTCCGACAGAAAATTGCTTCT CCGCATCAGGGGATGCTACGGTCCGACAGAAAATTGCTTCT < 41bp 0.755124934685553 0.432516519668869 NA NA prediction 0.510249869371106 Functional Loss - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36687856 chr20:36687855 synonymous SNV . 0 20 hm7G_associated_SNPs_8653 0 0 1 0 2 RPRD1B chr20:36687796 3'AG 36687796 Downstream 60bp 8287 chr20 36687855 36687855 1 + T G COAD 36687856 + 36687836 36687876 41 CCGCATCAGGGGATGCTACTGTCCGACAGAAAATTGCTTCT CCGCATCAGGGGATGCTACGGTCCGACAGAAAATTGCTTCT < 41bp 0.755124934685553 0.432516519668869 NA NA prediction 0.510249869371106 Functional Loss - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36687856 chr20:36687855 synonymous SNV . 0 20 hm7G_associated_SNPs_8653 0 0 1 0 2 RPRD1B chr20:36687922 5'GT 36687922 Upstream 68bp 8288 chr5 147475467 147475467 1 + T G COAD 147475468 + 147475448 147475488 41 AAAGTTAAAAGAGAAATTGTGGTGAGAATCAGTTTGATCAA AAAGTTAAAAGAGAAATTGGGGTGAGAATCAGTTTGATCAA < 41bp 0.837984970184717 0.582865496899559 NA NA prediction 0.510238946570316 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147475468 chr5:147475467 nonsynonymous SNV 0.319 0 20 hm7G_associated_SNPs_8654 0 0 0 0 1 SPINK5 chr5:147475381 3'AG 147475381 Downstream 87bp 8289 chr1 183184701 183184701 1 + T G SKCM 183184702 + 183184682 183184722 41 CATGCTCACGGATGCGGGGTGCACCCAAGACCAGAGACTGC CATGCTCACGGATGCGGGGGGCACCCAAGACCAGAGACTGC < 41bp 0.865035778059345 0.609995366933026 NA NA prediction 0.510080822252638 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183184702 chr1:183184701 nonsynonymous SNV 0.740 3 20 hm7G_associated_SNPs_8655 0 0 0 0 1 LAMC2 chr1:183184723 5'GT 183184723 Upstream 23bp 8290 chr11 129979419 129979419 1 + T G rs141677086 129979420 + 129979400 129979440 41 TGCATGTGAACATTCAGACTGGGAAATGGGAACCTGATCCA TGCATGTGAACATTCAGACGGGGAAATGGGAACCTGATCCA < 41bp 0.865594237083138 0.610913687488129 NA NA prediction 0.509361099190017 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:129979420 chr11:129979419 synonymous SNV . 0 20 hm7G_associated_SNPs_8663 0 0 1 0 1 APLP2 chr11:129979497 5'GT 129979497 Upstream 79bp 8291 chr6 33176652 33176652 1 + T G COAD 33176653 + 33176633 33176673 41 AAAACGTGGGAACTGAGTCTGTATGAGCTGCACCGGACCCC AAAACGTGGGAACTGAGTCGGTATGAGCTGCACCGGACCCC < 41bp 0.754646179471085 0.482164022080533 NA NA prediction 0.509292358942169 Functional Loss - RING1 ENSG00000204227 CDS Human protein_coding chr6:33176653 chr6:33176652 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_8666 0 0 1 0 1 RING1 chr6:33176677 5'GT 33176677 Upstream 26bp 8292 chr8 144641624 144641624 1 + T G SKCM 144641625 + 144641605 144641645 41 TTCCAGCCCTACTGCCTGGTGGTTAGGAAGCCCTCAAGCTC TTCCAGCCCTACTGCCTGGGGGTTAGGAAGCCCTCAAGCTC < 41bp 0.754581041354073 0.410351439554892 NA NA prediction 0.509162082708145 Functional Loss - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144641625 chr8:144641624 nonsynonymous SNV 0.013 3 20 hm7G_associated_SNPs_8668 0 0 0 0 2 GSDMD chr8:144641669 5'GT 144641669 Upstream 46bp 8293 chr8 144641624 144641624 1 + T G SKCM 144641625 + 144641605 144641645 41 TTCCAGCCCTACTGCCTGGTGGTTAGGAAGCCCTCAAGCTC TTCCAGCCCTACTGCCTGGGGGTTAGGAAGCCCTCAAGCTC < 41bp 0.754581041354073 0.410351439554892 NA NA prediction 0.509162082708145 Functional Loss - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144641625 chr8:144641624 nonsynonymous SNV 0.013 3 20 hm7G_associated_SNPs_8668 0 0 0 0 2 GSDMD chr8:144641722 5'GT 144641722 Upstream 99bp 8294 chr22 40417341 40417341 1 + T G COAD 40417342 + 40417322 40417362 41 AGAAACCTCCTCCTGCTCCTGACAGGACAGAACGTAGAGCC AGAAACCTCCTCCTGCTCCGGACAGGACAGAACGTAGAGCC < 41bp 0.872138510278512 0.617575588538974 NA NA prediction 0.509125843479076 Functional Loss - FAM83F ENSG00000133477 CDS Human protein_coding chr22:40417342 chr22:40417341 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_8669 0 0 0 0 1 FAM83F chr22:40417294 3'AG 40417294 Downstream 48bp 8295 chr12 64827280 64827280 1 + T G SKCM 64827281 + 64827261 64827301 41 TCCGGCCAGCAGAAGAAAATGACCAGTCTGCTGCTTTAGAG TCCGGCCAGCAGAAGAAAAGGACCAGTCTGCTGCTTTAGAG < 41bp 0.754542988658714 0.42465409877746 NA NA prediction 0.509085977317428 Functional Loss - XPOT ENSG00000184575 CDS Human protein_coding chr12:64827281 chr12:64827280 nonsynonymous SNV 0.775 1 20 hm7G_associated_SNPs_8670 0 0 1 0 1 XPOT chr12:64827194 3'AG 64827194 Downstream 87bp 8296 chr12 13232925 13232925 1 + T G UCEC 13232926 + 13232906 13232946 41 TTCTCTCTAGGATAAAGTTTGTTGAAGCTCCCTACGAGGTG TTCTCTCTAGGATAAAGTTGGTTGAAGCTCCCTACGAGGTG < 41bp 0.843540603353126 0.589005143885337 NA NA prediction 0.509070918935578 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13232926 chr12:13232925 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8671 0 0 1 1 1 FAM234B chr12:13232943 5'GT 13232943 Upstream 19bp 8297 chrX 70338645 70338645 1 + T G UCEC 70338646 + 70338626 70338666 41 AGCTACGAACACCGGCCCCTGAAGCGGCCGCGGCTGGGGCC AGCTACGAACACCGGCCCCGGAAGCGGCCGCGGCTGGGGCC < 41bp 0.868925381047116 0.614418524950408 NA NA prediction 0.509013712193416 Functional Loss - MED12 ENSG00000184634 CDS Human protein_coding chrX:70338646 chrX:70338645 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8672 0 0 0 0 1 MED12 chrX:70338703 5'GT 70338703 Upstream 59bp 8298 chr9 80912146 80912146 1 + T G BLCA 80912147 + 80912127 80912167 41 ATGGACGCCCCCAGGCAGGTGGTCAACTTTGGGCCTGGTCC ATGGACGCCCCCAGGCAGGGGGTCAACTTTGGGCCTGGTCC < 41bp 0.852644691371823 0.598180188792963 NA NA prediction 0.508929005157718 Functional Loss - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80912147 chr9:80912146 nonsynonymous SNV 0.893 2 20 hm7G_associated_SNPs_8674 0 0 1 0 1 PSAT1 chr9:80912186 5'GT 80912186 Upstream 41bp 8299 chr10 17746972 17746972 1 + T G COAD 17746973 + 17746953 17746993 41 CATCTTGTCATTTTAGCAATGTGTCACCAGATGGGACCTCT CATCTTGTCATTTTAGCAAGGTGTCACCAGATGGGACCTCT < 41bp 0.841426836810597 0.586966131350551 NA NA prediction 0.508921410920091 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17746973 chr10:17746972 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_8675 0 0 1 0 2 STAM chr10:17746969 3'AG 17746969 Downstream 4bp 8300 chr10 17746972 17746972 1 + T G COAD 17746973 + 17746953 17746993 41 CATCTTGTCATTTTAGCAATGTGTCACCAGATGGGACCTCT CATCTTGTCATTTTAGCAAGGTGTCACCAGATGGGACCTCT < 41bp 0.841426836810597 0.586966131350551 NA NA prediction 0.508921410920091 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17746973 chr10:17746972 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_8675 0 0 1 0 2 STAM chr10:17747023 5'GT 17747023 Upstream 52bp 8301 chr16 68289747 68289747 1 + T G UCEC 68289748 + 68289728 68289768 41 TATGGGGGCCCCGTGGTGCTGGTTGCCCACAGTATGGGCAA TATGGGGGCCCCGTGGTGCGGGTTGCCCACAGTATGGGCAA < 41bp 0.867098860041748 0.612701143323848 NA NA prediction 0.5087954334358 Functional Loss - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68289748 chr16:68289747 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8676 0 0 0 0 1 PLA2G15 chr16:68289669 3'AG 68289669 Downstream 79bp 8302 chr19 17865149 17865149 1 + T G rs191017060 17865150 + 17865130 17865170 41 GGAAACTGAGGCACGGAGCTGGACAGTGACTCAGACACCAG GGAAACTGAGGCACGGAGCGGGACAGTGACTCAGACACCAG < 41bp 0.805651979501137 0.551434823669204 NA NA prediction 0.508434311663864 Functional Loss - FCHO1 ENSG00000130475 UTR5 Human protein_coding chr19:17865150 chr19:17865149 . . 0 20 hm7G_associated_SNPs_8683 0 0 0 0 2 FCHO1 chr19:17865126 3'AG 17865126 Downstream 24bp 8303 chr19 17865149 17865149 1 + T G rs191017060 17865150 + 17865130 17865170 41 GGAAACTGAGGCACGGAGCTGGACAGTGACTCAGACACCAG GGAAACTGAGGCACGGAGCGGGACAGTGACTCAGACACCAG < 41bp 0.805651979501137 0.551434823669204 NA NA prediction 0.508434311663864 Functional Loss - FCHO1 ENSG00000130475 UTR5 Human protein_coding chr19:17865150 chr19:17865149 . . 0 20 hm7G_associated_SNPs_8683 0 0 0 0 2 FCHO1 chr19:17865170 5'GT 17865170 Upstream 22bp 8304 chr12 4708936 4708936 1 + T G SKCM 4708937 + 4708917 4708957 41 CATTGACTTTGGATCAAGCTGTTATGAACACCAGAAAGGTG CATTGACTTTGGATCAAGCGGTTATGAACACCAGAAAGGTG < 41bp 0.86442092203496 0.610237074998655 NA NA prediction 0.50836769407261 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4708937 chr12:4708936 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8684 0 0 0 0 2 DYRK4 chr12:4708873 3'AG 4708873 Downstream 64bp 8305 chr12 4708936 4708936 1 + T G SKCM 4708937 + 4708917 4708957 41 CATTGACTTTGGATCAAGCTGTTATGAACACCAGAAAGGTG CATTGACTTTGGATCAAGCGGTTATGAACACCAGAAAGGTG < 41bp 0.86442092203496 0.610237074998655 NA NA prediction 0.50836769407261 Functional Loss - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4708937 chr12:4708936 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8684 0 0 0 0 2 DYRK4 chr12:4708954 5'GT 4708954 Upstream 19bp 8306 chr12 108010952 108010952 1 + T G rs145621368 108010953 + 108010933 108010973 41 CACCCCTCCAGCTGGCAGCTGCTGTAGGTAAGAGCTGCTGG CACCCCTCCAGCTGGCAGCGGCTGTAGGTAAGAGCTGCTGG < 41bp 0.754182019098975 0.419930992518988 NA NA prediction 0.508364038197949 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108010953 chr12:108010952 synonymous SNV . 0 20 hm7G_associated_SNPs_8686 0 0 0 0 2 BTBD11 chr12:108010866 3'AG 108010866 Downstream 87bp 8307 chr12 108010952 108010952 1 + T G rs145621368 108010953 + 108010933 108010973 41 CACCCCTCCAGCTGGCAGCTGCTGTAGGTAAGAGCTGCTGG CACCCCTCCAGCTGGCAGCGGCTGTAGGTAAGAGCTGCTGG < 41bp 0.754182019098975 0.419930992518988 NA NA prediction 0.508364038197949 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108010953 chr12:108010952 synonymous SNV . 0 20 hm7G_associated_SNPs_8686 0 0 0 0 2 BTBD11 chr12:108010959 5'GT 108010959 Upstream 8bp 8308 chr7 148495100 148495100 1 + T G UCEC 148495101 + 148495081 148495121 41 CCTTAATAAAATTATATCTTGGTTATAAAAAGTAAGAAAAA CCTTAATAAAATTATATCTGGGTTATAAAAAGTAAGAAAAA < 41bp 0.85456720883614 0.600438150405376 NA NA prediction 0.508258116861528 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148495101 chr7:148495100 synonymous SNV . 0 20 hm7G_associated_SNPs_8688 0 0 1 0 2 CUL1 chr7:148495029 3'AG 148495029 Downstream 72bp 8309 chr7 148495100 148495100 1 + T G UCEC 148495101 + 148495081 148495121 41 CCTTAATAAAATTATATCTTGGTTATAAAAAGTAAGAAAAA CCTTAATAAAATTATATCTGGGTTATAAAAAGTAAGAAAAA < 41bp 0.85456720883614 0.600438150405376 NA NA prediction 0.508258116861528 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148495101 chr7:148495100 synonymous SNV . 0 20 hm7G_associated_SNPs_8688 0 0 1 0 2 CUL1 chr7:148495111 5'GT 148495111 Upstream 12bp 8310 chr9 71844146 71844146 1 + T G BLCA 71844147 + 71844127 71844167 41 CTTTTCTTCGTCCTAGTCCTGAAGATGAAGCAATATATGGG CTTTTCTTCGTCCTAGTCCGGAAGATGAAGCAATATATGGG < 41bp 0.754081212621476 0.43044408471904 NA NA prediction 0.508162425242953 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71844147 chr9:71844146 synonymous SNV . 0 20 hm7G_associated_SNPs_8690 0 0 1 0 2 TJP2 chr9:71844100 3'AG 71844100 Downstream 47bp 8311 chr9 71844146 71844146 1 + T G BLCA 71844147 + 71844127 71844167 41 CTTTTCTTCGTCCTAGTCCTGAAGATGAAGCAATATATGGG CTTTTCTTCGTCCTAGTCCGGAAGATGAAGCAATATATGGG < 41bp 0.754081212621476 0.43044408471904 NA NA prediction 0.508162425242953 Functional Loss - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71844147 chr9:71844146 synonymous SNV . 0 20 hm7G_associated_SNPs_8690 0 0 1 0 2 TJP2 chr9:71844166 5'GT 71844166 Upstream 21bp 8312 chr18 48604703 48604703 1 + T G PAAD 48604704 + 48604684 48604724 41 GATGAGTTTTGTGAAAGGCTGGGGACCGGATTACCCAAGAC GATGAGTTTTGTGAAAGGCGGGGGACCGGATTACCCAAGAC < 41bp 0.841418699342547 0.587337794383854 NA NA prediction 0.508161809917386 Functional Loss - SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48604704 chr18:48604703 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8691 0 0 1 0 1 SMAD4 chr18:48604626 3'AG 48604626 Downstream 78bp 8313 chr10 63450376 63450376 1 + T G SKCM 63450377 + 63450357 63450397 41 AAGAAATTGTGATAGGAACTGAGGTAAGTAATTTATCTAGA AAGAAATTGTGATAGGAACGGAGGTAAGTAATTTATCTAGA < 41bp 0.830660054188676 0.576587010430361 NA NA prediction 0.50814608751663 Functional Loss - C10orf107 ENSG00000183346 CDS Human protein_coding chr10:63450377 chr10:63450376 synonymous SNV . 0 20 hm7G_associated_SNPs_8693 0 0 0 0 2 C10orf107 chr10:63450307 3'AG 63450307 Downstream 70bp 8314 chr10 63450376 63450376 1 + T G SKCM 63450377 + 63450357 63450397 41 AAGAAATTGTGATAGGAACTGAGGTAAGTAATTTATCTAGA AAGAAATTGTGATAGGAACGGAGGTAAGTAATTTATCTAGA < 41bp 0.830660054188676 0.576587010430361 NA NA prediction 0.50814608751663 Functional Loss - C10orf107 ENSG00000183346 CDS Human protein_coding chr10:63450377 chr10:63450376 synonymous SNV . 0 20 hm7G_associated_SNPs_8693 0 0 0 0 2 C10orf107 chr10:63450379 5'GT 63450379 Upstream 4bp 8315 chr10 19820217 19820217 1 + T G UCEC 19820218 + 19820198 19820238 41 AATCCTTCCCAGCAAGCCTTGGAATGTGTACTGTTCGGTTC AATCCTTCCCAGCAAGCCTGGGAATGTGTACTGTTCGGTTC < 41bp 0.754040597290898 0.438433641670335 NA NA prediction 0.508081194581797 Functional Loss - MALRD1 ENSG00000204740 CDS Human protein_coding chr10:19820218 chr10:19820217 synonymous SNV . 0 20 hm7G_associated_SNPs_8695 0 0 1 0 2 MALRD1 chr10:19820123 3'AG 19820123 Downstream 95bp 8316 chr10 19820217 19820217 1 + T G UCEC 19820218 + 19820198 19820238 41 AATCCTTCCCAGCAAGCCTTGGAATGTGTACTGTTCGGTTC AATCCTTCCCAGCAAGCCTGGGAATGTGTACTGTTCGGTTC < 41bp 0.754040597290898 0.438433641670335 NA NA prediction 0.508081194581797 Functional Loss - MALRD1 ENSG00000204740 CDS Human protein_coding chr10:19820218 chr10:19820217 synonymous SNV . 0 20 hm7G_associated_SNPs_8695 0 0 1 0 2 MALRD1 chr10:19820280 5'GT 19820280 Upstream 64bp 8317 chr16 70594382 70594382 1 + T G COAD 70594383 + 70594363 70594403 41 TTTGATTAGAACGGTGTGCTGCTGAGGACTGTCTTGGACCC TTTGATTAGAACGGTGTGCGGCTGAGGACTGTCTTGGACCC < 41bp 0.863092210035312 0.609078700167391 NA NA prediction 0.508027019735841 Functional Loss - SF3B3 ENSG00000189091 CDS Human protein_coding chr16:70594383 chr16:70594382 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8696 0 0 1 0 1 SF3B3 chr16:70594372 3'AG 70594372 Downstream 11bp 8318 chr8 104337321 104337321 1 + T G CESC 104337322 + 104337302 104337342 41 AAGCAGTGTGGTTTCATGCTGTTGCATGGGGAACACCAGGT AAGCAGTGTGGTTTCATGCGGTTGCATGGGGAACACCAGGT < 41bp 0.848614446627677 0.594612969867518 NA NA prediction 0.508002953520317 Functional Loss - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104337322 chr8:104337321 synonymous SNV . 0 20 hm7G_associated_SNPs_8697 0 0 1 0 1 FZD6 chr8:104337282 3'AG 104337282 Downstream 40bp 8319 chr6 133833864 133833864 1 + T G STAD 133833865 + 133833845 133833885 41 AATGTTTTTAACAGGAGTGTGATCAAGTTCATATAGATGAT AATGTTTTTAACAGGAGTGGGATCAAGTTCATATAGATGAT < 41bp 0.753992929989822 0.45680831566462 NA NA prediction 0.507985859979644 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133833865 chr6:133833864 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8698 0 0 0 0 2 EYA4 chr6:133833859 3'AG 133833859 Downstream 6bp 8320 chr6 133833864 133833864 1 + T G STAD 133833865 + 133833845 133833885 41 AATGTTTTTAACAGGAGTGTGATCAAGTTCATATAGATGAT AATGTTTTTAACAGGAGTGGGATCAAGTTCATATAGATGAT < 41bp 0.753992929989822 0.45680831566462 NA NA prediction 0.507985859979644 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133833865 chr6:133833864 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_8698 0 0 0 0 2 EYA4 chr6:133833917 5'GT 133833917 Upstream 54bp 8321 chr2 220462867 220462867 1 + T G OV 220462868 + 220462848 220462888 41 ACCGCTCAGAGGGACTCCCTGTTGTGGAAGCTCGCGGGGTT ACCGCTCAGAGGGACTCCCGGTTGTGGAAGCTCGCGGGGTT < 41bp 0.865317381600715 0.611347897157731 NA NA prediction 0.507938968885967 Functional Loss - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220462868 chr2:220462867 nonsynonymous SNV 0.109 2 20 hm7G_associated_SNPs_8699 0 0 1 0 1 STK11IP chr2:220462902 5'GT 220462902 Upstream 36bp 8322 chr9 15447191 15447191 1 + T G rs41311434 15447192 + 15447172 15447212 41 GTGTCAGTGACCTCCAGATTGGTGGTGAATTCAGCAACACT GTGTCAGTGACCTCCAGATGGGTGGTGAATTCAGCAACACT < 41bp 0.86515824055437 0.611207081187511 NA NA prediction 0.50790231873372 Functional Loss - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15447192 chr9:15447191 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_8701 0 0 1 1 2 SNAPC3 chr9:15447093 3'AG 15447093 Downstream 99bp 8323 chr9 15447191 15447191 1 + T G rs41311434 15447192 + 15447172 15447212 41 GTGTCAGTGACCTCCAGATTGGTGGTGAATTCAGCAACACT GTGTCAGTGACCTCCAGATGGGTGGTGAATTCAGCAACACT < 41bp 0.86515824055437 0.611207081187511 NA NA prediction 0.50790231873372 Functional Loss - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15447192 chr9:15447191 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_8701 0 0 1 1 2 SNAPC3 chr9:15447242 5'GT 15447242 Upstream 52bp 8324 chr3 51743392 51743392 1 + T G SKCM 51743393 + 51743373 51743413 41 CTTATGCGACCCATGGTGATGCTCCCACTGCCATCACTGGT CTTATGCGACCCATGGTGAGGCTCCCACTGCCATCACTGGT < 41bp 0.753943938651376 0.423672731249986 NA NA prediction 0.507887877302753 Functional Loss - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51743393 chr3:51743392 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8702 0 0 1 4 1 GRM2 chr3:51743449 5'GT 51743449 Upstream 58bp 8325 chrX 48557307 48557307 1 + T G LUSC 48557308 + 48557288 48557328 41 TCCAGGCTGCAGCGTGTGTTGCAAGTCTTCTTGGAATCAGC TCCAGGCTGCAGCGTGTGTGGCAAGTCTTCTTGGAATCAGC < 41bp 0.753837200846787 0.405476467045459 NA NA prediction 0.507674401693573 Functional Loss - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48557308 chrX:48557307 nonsynonymous SNV 0.953 3 20 hm7G_associated_SNPs_8704 0 0 1 0 1 SUV39H1 chrX:48557293 3'AG 48557293 Downstream 15bp 8326 chr22 38465067 38465067 1 + T G THCA 38465068 + 38465048 38465088 41 AAAGTCAAGCACCGGCTGGTGGAGAACATGAGTTCAGGGAC AAAGTCAAGCACCGGCTGGGGGAGAACATGAGTTCAGGGAC < 41bp 0.883919769790238 0.63014647105398 NA NA prediction 0.507546597472517 Functional Loss - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38465068 chr22:38465067 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8707 0 0 1 0 1 PICK1 chr22:38465129 5'GT 38465129 Upstream 63bp 8327 chr19 22785272 22785272 1 + T G COAD 22785273 + 22785253 22785293 41 CTGGGATGGATTCTGTGTGTGGGGGGACCCACCGGGCCCTG CTGGGATGGATTCTGTGTGGGGGGGGACCCACCGGGCCCTG < 41bp 0.753753696958245 0.451374351740298 NA NA prediction 0.50750739391649 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785273 chr19:22785272 . . 0 20 hm7G_associated_SNPs_8708 0 0 0 0 1 GOLGA2P9 chr19:22785317 5'GT 22785317 Upstream 46bp 8328 chr12 1943505 1943505 1 + T G GBM 1943506 + 1943486 1943526 41 GACATGCGGATGGTCCCCATGGAGATGTTCAACTACTGCTC GACATGCGGATGGTCCCCAGGGAGATGTTCAACTACTGCTC < 41bp 0.872534679588842 0.618791606261098 NA NA prediction 0.507486146655489 Functional Loss - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1943506 chr12:1943505 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8710 0 0 0 0 1 LRTM2 chr12:1943433 3'AG 1943433 Downstream 73bp 8329 chr1 183502394 183502394 1 + T G UVM 183502395 + 183502375 183502415 41 ACCTTCGTGACTTTAGCAATGAAACCGAGCAGCACACTTAT ACCTTCGTGACTTTAGCAAGGAAACCGAGCAGCACACTTAT < 41bp 0.874149273464467 0.620439727604773 NA NA prediction 0.507419091719387 Functional Loss - SMG7 ENSG00000116698 CDS Human protein_coding chr1:183502395 chr1:183502394 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_8711 0 0 1 0 2 SMG7 chr1:183502299 3'AG 183502299 Downstream 96bp 8330 chr1 183502394 183502394 1 + T G UVM 183502395 + 183502375 183502415 41 ACCTTCGTGACTTTAGCAATGAAACCGAGCAGCACACTTAT ACCTTCGTGACTTTAGCAAGGAAACCGAGCAGCACACTTAT < 41bp 0.874149273464467 0.620439727604773 NA NA prediction 0.507419091719387 Functional Loss - SMG7 ENSG00000116698 CDS Human protein_coding chr1:183502395 chr1:183502394 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_8711 0 0 1 0 2 SMG7 chr1:183502461 5'GT 183502461 Upstream 68bp 8331 chr1 36754757 36754757 1 + T G UCEC 36754758 + 36754738 36754778 41 AAGAGAAAGGGAGCTTCTCTGACACAGGCTTGGGTGATGGA AAGAGAAAGGGAGCTTCTCGGACACAGGCTTGGGTGATGGA < 41bp 0.864215957911472 0.610561077446841 NA NA prediction 0.507309760929261 Functional Loss - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36754758 chr1:36754757 synonymous SNV . 0 20 hm7G_associated_SNPs_8712 0 0 1 0 1 THRAP3 chr1:36754661 3'AG 36754661 Downstream 97bp 8332 chr17 61936928 61936928 1 + T G rs531736814 61936929 + 61936909 61936949 41 GCAGAACTGGACTTGAGTTTGCAAGGTGGGAGGCTCTTTCA GCAGAACTGGACTTGAGTTGGCAAGGTGGGAGGCTCTTTCA < 41bp 0.753589511844987 0.477736898146279 NA NA prediction 0.507179023689973 Functional Loss - TCAM1P ENSG00000240280 ncRNA_exonic Human transcribed_unitary_pseudogene chr17:61936929 chr17:61936928 . . 0 20 hm7G_associated_SNPs_8713 0 0 0 0 1 TCAM1P chr17:61936984 5'GT 61936984 Upstream 57bp 8333 chr2 26587175 26587175 1 + T G TGCT 26587176 + 26587156 26587196 41 TCATTTCTTAACAGTACAGTGCTGTGGATACCAATCCACTT TCATTTCTTAACAGTACAGGGCTGTGGATACCAATCCACTT < 41bp 0.860972437576541 0.607396453757544 NA NA prediction 0.507151967637993 Functional Loss - SELENOI ENSG00000138018 CDS Human protein_coding chr2:26587176 chr2:26587175 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8715 0 0 1 0 2 SELENOI chr2:26587170 3'AG 26587170 Downstream 6bp 8334 chr2 26587175 26587175 1 + T G TGCT 26587176 + 26587156 26587196 41 TCATTTCTTAACAGTACAGTGCTGTGGATACCAATCCACTT TCATTTCTTAACAGTACAGGGCTGTGGATACCAATCCACTT < 41bp 0.860972437576541 0.607396453757544 NA NA prediction 0.507151967637993 Functional Loss - SELENOI ENSG00000138018 CDS Human protein_coding chr2:26587176 chr2:26587175 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8715 0 0 1 0 2 SELENOI chr2:26587238 5'GT 26587238 Upstream 64bp 8335 chr12 20870068 20870068 1 + T G SKCM 20870069 + 20870049 20870089 41 TTCTTTTCTTGGTGCAGGGTGTGTGCAGACGGTTGCAATTA TTCTTTTCTTGGTGCAGGGGGTGTGCAGACGGTTGCAATTA < 41bp 0.753529498554043 0.458936904485826 NA NA prediction 0.507058997108087 Functional Loss - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20870069 chr12:20870068 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_8717 0 0 0 0 1 SLCO1C1 chr12:20870164 5'GT 20870164 Upstream 97bp 8336 chrX 48125776 48125776 1 + T G UCS 48125777 + 48125757 48125797 41 CTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAG CTGCGTGAGAGAAAGCAGCGGGTGATTTATGAAGAGATCAG < 41bp 0.85821635609029 0.604692109690185 NA NA prediction 0.50704849280021 Functional Loss - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48125777 chrX:48125776 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_8718 0 0 0 0 2 SSX1 chrX:48125722 3'AG 48125722 Downstream 55bp 8337 chrX 48125776 48125776 1 + T G UCS 48125777 + 48125757 48125797 41 CTGCGTGAGAGAAAGCAGCTGGTGATTTATGAAGAGATCAG CTGCGTGAGAGAAAGCAGCGGGTGATTTATGAAGAGATCAG < 41bp 0.85821635609029 0.604692109690185 NA NA prediction 0.50704849280021 Functional Loss - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48125777 chrX:48125776 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_8718 0 0 0 0 2 SSX1 chrX:48125826 5'GT 48125826 Upstream 51bp 8338 chr5 128368833 128368833 1 + T G UCEC 128368834 + 128368814 128368854 41 ACAGGAACATTCAAACTATTGAAGCATCAGTTGGTGGAAGA ACAGGAACATTCAAACTATGGAAGCATCAGTTGGTGGAAGA < 41bp 0.841116630354305 0.587604307578223 NA NA prediction 0.507024645552163 Functional Loss - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128368834 chr5:128368833 nonsynonymous SNV 0.587 1 20 hm7G_associated_SNPs_8719 0 0 0 0 1 SLC27A6 chr5:128368799 3'AG 128368799 Downstream 35bp 8339 chr19 3589526 3589526 1 + T G CESC 3589527 + 3589507 3589547 41 AGACCCTGCGGCTTCGTTCTGGGGGGGCTGCCACAGTGGAG AGACCCTGCGGCTTCGTTCGGGGGGGGCTGCCACAGTGGAG < 41bp 0.874266559557768 0.620873707914525 NA NA prediction 0.506785703286485 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589527 chr19:3589526 synonymous SNV . 0 20 hm7G_associated_SNPs_8722 0 0 0 0 2 GIPC3 chr19:3589441 3'AG 3589441 Downstream 86bp 8340 chr19 3589526 3589526 1 + T G CESC 3589527 + 3589507 3589547 41 AGACCCTGCGGCTTCGTTCTGGGGGGGCTGCCACAGTGGAG AGACCCTGCGGCTTCGTTCGGGGGGGGCTGCCACAGTGGAG < 41bp 0.874266559557768 0.620873707914525 NA NA prediction 0.506785703286485 Functional Loss - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589527 chr19:3589526 synonymous SNV . 0 20 hm7G_associated_SNPs_8722 0 0 0 0 2 GIPC3 chr19:3589553 5'GT 3589553 Upstream 28bp 8341 chr8 101245659 101245659 1 + T G LUSC 101245660 + 101245640 101245680 41 GCTCTCTGTTACTTGAAGCTGTGCCAGTTTGAAGAAGCAAA GCTCTCTGTTACTTGAAGCGGTGCCAGTTTGAAGAAGCAAA < 41bp 0.753238818454024 0.434032925106 NA NA prediction 0.506477636908047 Functional Loss - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101245660 chr8:101245659 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8723 0 0 1 0 1 SPAG1 chr8:101245639 3'AG 101245639 Downstream 21bp 8342 chr5 176519379 176519379 1 + T G LUSC 176519380 + 176519360 176519400 41 CCGGCCAACACCACAGCCGTGGTGGGCAGCGACGTGGAGCT CCGGCCAACACCACAGCCGGGGTGGGCAGCGACGTGGAGCT < 41bp 0.886267932431324 0.633160279908001 NA NA prediction 0.506215305046645 Functional Loss - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519380 chr5:176519379 nonsynonymous SNV 0.915 3 20 hm7G_associated_SNPs_8725 0 0 0 0 1 FGFR4 chr5:176519322 3'AG 176519322 Downstream 58bp 8343 chr7 139657529 139657529 1 + T G UCEC 139657530 + 139657510 139657550 41 AACAAACTCATTAGGAATGTGATTGCCTTGCGGGACCAGCA AACAAACTCATTAGGAATGGGATTGCCTTGCGGGACCAGCA < 41bp 0.870994838481846 0.617931388309072 NA NA prediction 0.506126900345546 Functional Loss - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139657530 chr7:139657529 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_8727 0 0 0 0 2 TBXAS1 chr7:139657433 3'AG 139657433 Downstream 97bp 8344 chr7 139657529 139657529 1 + T G UCEC 139657530 + 139657510 139657550 41 AACAAACTCATTAGGAATGTGATTGCCTTGCGGGACCAGCA AACAAACTCATTAGGAATGGGATTGCCTTGCGGGACCAGCA < 41bp 0.870994838481846 0.617931388309072 NA NA prediction 0.506126900345546 Functional Loss - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139657530 chr7:139657529 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_8727 0 0 0 0 2 TBXAS1 chr7:139657563 5'GT 139657563 Upstream 35bp 8345 chr17 40723602 40723602 1 + T G PRAD 40723603 + 40723583 40723623 41 ATTGGCGTCCTGCACCAATTGAAAAACCAGCTTTACTGACC ATTGGCGTCCTGCACCAATGGAAAAACCAGCTTTACTGACC < 41bp 0.752929064275856 0.448495265221404 NA NA prediction 0.505858128551712 Functional Loss - MLX ENSG00000108788 CDS Human protein_coding chr17:40723603 chr17:40723602 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_8729 0 0 1 0 1 MLX chr17:40723565 3'AG 40723565 Downstream 38bp 8346 chr8 15508299 15508299 1 + T G SKCM 15508300 + 15508280 15508320 41 TCAGTATGGTGGACTATGATGAGGGGACAGACGTTTTTCAG TCAGTATGGTGGACTATGAGGAGGGGACAGACGTTTTTCAG < 41bp 0.752834613503313 0.438483729189958 NA NA prediction 0.505669227006627 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15508300 chr8:15508299 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8733 0 0 1 0 2 TUSC3 chr8:15508206 3'AG 15508206 Downstream 94bp 8347 chr8 15508299 15508299 1 + T G SKCM 15508300 + 15508280 15508320 41 TCAGTATGGTGGACTATGATGAGGGGACAGACGTTTTTCAG TCAGTATGGTGGACTATGAGGAGGGGACAGACGTTTTTCAG < 41bp 0.752834613503313 0.438483729189958 NA NA prediction 0.505669227006627 Functional Loss - TUSC3 ENSG00000104723 CDS Human protein_coding chr8:15508300 chr8:15508299 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8733 0 0 1 0 2 TUSC3 chr8:15508323 5'GT 15508323 Upstream 25bp 8348 chr5 128365291 128365291 1 + T G SKCM 128365292 + 128365272 128365312 41 TATGAAGGAAGAGCAGGAATGGCTTCTATTATTTTAAAACC TATGAAGGAAGAGCAGGAAGGGCTTCTATTATTTTAAAACC < 41bp 0.752819616107157 0.442018511587353 NA NA prediction 0.505639232214315 Functional Loss - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128365292 chr5:128365291 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8734 0 0 0 0 1 SLC27A6 chr5:128365270 3'AG 128365270 Downstream 22bp 8349 chr12 6639115 6639115 1 + T G rs61731147 6639116 + 6639096 6639136 41 TGCGACGTGGGGCCAAGCCTGAGGGCAAGGTGAGCAGCACA TGCGACGTGGGGCCAAGCCGGAGGGCAAGGTGAGCAGCACA < 41bp 0.869394615644684 0.616595759250786 NA NA prediction 0.505597712787796 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6639116 chr12:6639115 synonymous SNV . 0 20 hm7G_associated_SNPs_8735 0 0 1 0 1 NCAPD2 chr12:6639124 5'GT 6639124 Upstream 10bp 8350 chr20 18460780 18460780 1 + T G UCEC 18460781 + 18460761 18460801 41 AGGATTTTGAATCTGAATTTGTAGAGGTGCTTAACCAACAG AGGATTTTGAATCTGAATTGGTAGAGGTGCTTAACCAACAG < 41bp 0.854772829353419 0.602024164667533 NA NA prediction 0.505497329371773 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18460781 chr20:18460780 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_8736 0 0 1 1 2 POLR3F chr20:18460682 3'AG 18460682 Downstream 99bp 8351 chr20 18460780 18460780 1 + T G UCEC 18460781 + 18460761 18460801 41 AGGATTTTGAATCTGAATTTGTAGAGGTGCTTAACCAACAG AGGATTTTGAATCTGAATTGGTAGAGGTGCTTAACCAACAG < 41bp 0.854772829353419 0.602024164667533 NA NA prediction 0.505497329371773 Functional Loss - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18460781 chr20:18460780 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_8736 0 0 1 1 2 POLR3F chr20:18460825 5'GT 18460825 Upstream 46bp 8352 chr2 27528630 27528630 1 + T G COAD 27528631 + 27528611 27528651 41 CTGGAGGCCTCCTCTAAGCTGGTGGAGTCTGCCATCCAGTC CTGGAGGCCTCCTCTAAGCGGGTGGAGTCTGCCATCCAGTC < 41bp 0.872844358814835 0.620109458455108 NA NA prediction 0.505469800719454 Functional Loss - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27528631 chr2:27528630 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_8737 0 0 0 0 1 TRIM54 chr2:27528685 5'GT 27528685 Upstream 56bp 8353 chr12 53689386 53689386 1 + T G OV 53689387 + 53689367 53689407 41 AACATCACGGAGCTGAATCTGCCGCAGCTAGAAATGCTCAA AACATCACGGAGCTGAATCGGCCGCAGCTAGAAATGCTCAA < 41bp 0.855839063888164 0.603144187948046 NA NA prediction 0.505389751880235 Functional Loss - PFDN5 ENSG00000123349 CDS Human protein_coding chr12:53689387 chr12:53689386 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_8739 0 0 1 0 1 PFDN5 chr12:53689423 5'GT 53689423 Upstream 38bp 8354 chr13 40261867 40261867 1 + T G UCEC 40261868 + 40261848 40261888 41 TGTAGGAGATATGTTGGCTTGGCTCCATCAAGCTACTGCTT TGTAGGAGATATGTTGGCTGGGCTCCATCAAGCTACTGCTT < 41bp 0.752603154368526 0.426877493056677 NA NA prediction 0.505206308737052 Functional Loss - COG6 ENSG00000133103 CDS Human protein_coding chr13:40261868 chr13:40261867 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_8740 0 0 1 0 2 COG6 chr13:40261845 3'AG 40261845 Downstream 23bp 8355 chr13 40261867 40261867 1 + T G UCEC 40261868 + 40261848 40261888 41 TGTAGGAGATATGTTGGCTTGGCTCCATCAAGCTACTGCTT TGTAGGAGATATGTTGGCTGGGCTCCATCAAGCTACTGCTT < 41bp 0.752603154368526 0.426877493056677 NA NA prediction 0.505206308737052 Functional Loss - COG6 ENSG00000133103 CDS Human protein_coding chr13:40261868 chr13:40261867 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_8740 0 0 1 0 2 COG6 chr13:40261936 5'GT 40261936 Upstream 70bp 8356 chrX 47069022 47069022 1 + T G KIRP 47069023 + 47069003 47069043 41 CTGTTTGCTCTGTCTGCAGTGGGCTCGGGATGAGTTTGAAG CTGTTTGCTCTGTCTGCAGGGGGCTCGGGATGAGTTTGAAG < 41bp 0.752570054354816 0.405326007900893 NA NA prediction 0.505140108709633 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47069023 chrX:47069022 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8741 0 0 1 0 2 UBA1 chrX:47069022 3'AG 47069022 Downstream 1bp 8357 chrX 47069022 47069022 1 + T G KIRP 47069023 + 47069003 47069043 41 CTGTTTGCTCTGTCTGCAGTGGGCTCGGGATGAGTTTGAAG CTGTTTGCTCTGTCTGCAGGGGGCTCGGGATGAGTTTGAAG < 41bp 0.752570054354816 0.405326007900893 NA NA prediction 0.505140108709633 Functional Loss - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47069023 chrX:47069022 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8741 0 0 1 0 2 UBA1 chrX:47069086 5'GT 47069086 Upstream 65bp 8358 chr10 4872981 4872981 1 + T G rs35429729 4872982 + 4872962 4873002 41 GGTTGGAGCAGGGATCCGTTGCAAGATCAAGGAAGGCGCTG GGTTGGAGCAGGGATCCGTGGCAAGATCAAGGAAGGCGCTG < 41bp 0.881005385377385 0.628438568312452 NA NA prediction 0.505133634129867 Functional Loss - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4872982 chr10:4872981 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_8742 0 0 0 0 1 AKR1E2 chr10:4873034 5'GT 4873034 Upstream 54bp 8359 chr11 15197365 15197365 1 + T G COAD 15197366 + 15197346 15197386 41 CCGAGTGCGAGTGCATGTGTGTCCTGCAGGCCAAGCCCATC CCGAGTGCGAGTGCATGTGGGTCCTGCAGGCCAAGCCCATC < 41bp 0.752470550718249 0.411176843283978 NA NA prediction 0.504941101436497 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15197366 chr11:15197365 nonsynonymous SNV 0.953 4 20 hm7G_associated_SNPs_8744 0 0 0 0 1 INSC chr11:15197287 3'AG 15197287 Downstream 79bp 8360 chr1 233497839 233497839 1 + T G LUSC 233497840 + 233497820 233497860 41 GAGCTGACTCGGGCGGCTCTGCAGCAGAAGTCTCAGGAGGA GAGCTGACTCGGGCGGCTCGGCAGCAGAAGTCTCAGGAGGA < 41bp 0.87824954087736 0.625850856722308 NA NA prediction 0.504797368310105 Functional Loss - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233497840 chr1:233497839 nonsynonymous SNV 0.264 1 20 hm7G_associated_SNPs_8749 0 0 1 0 1 MAP3K21 chr1:233497799 3'AG 233497799 Downstream 41bp 8361 chr19 53905376 53905376 1 + T G LUAD 53905377 + 53905357 53905397 41 CAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCT CAGGAGGAGTGGAAATGCCGGGACCCTGCTCAGAGGACTCT < 41bp 0.877448388936076 0.625139807270876 NA NA prediction 0.504617163330398 Functional Loss - ZNF765 ENSG00000196417 CDS Human protein_coding chr19:53905377 chr19:53905376 nonsynonymous SNV 0.017 3 20 hm7G_associated_SNPs_8752 0 0 0 0 1 ZNF765 chr19:53905444 5'GT 53905444 Upstream 69bp 8362 chr2 171627676 171627676 1 + T G rs1861462 171627677 + 171627657 171627697 41 GTGTGCCCTTCGGATGGTCTGCTGAAGAGGGCCGCCAGCTG GTGTGCCCTTCGGATGGTCGGCTGAAGAGGGCCGCCAGCTG < 41bp 0.825773989628695 0.573555663450456 NA NA prediction 0.504436652356477 Functional Loss - ERICH2 ENSG00000239467 ncRNA_exonic Human lincRNA chr2:171627677 chr2:171627676 . . 0 20 hm7G_associated_SNPs_8754 0 0 1 0 1 ERICH2 chr2:171627697 5'GT 171627697 Upstream 22bp 8363 chrX 152018832 152018832 1 + T G rs5969919 152018833 + 152018813 152018853 41 AGAGATGCACAGTGATCGGTGGCTCTGGATTCCTGGGGCAG AGAGATGCACAGTGATCGGGGGCTCTGGATTCCTGGGGCAG < 41bp 0.883294058810979 0.631200841185408 NA NA prediction 0.504186435251143 Functional Loss - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152018833 chrX:152018832 synonymous SNV . 0 20 hm7G_associated_SNPs_8757 1 0 1 0 1 NSDHL chrX:152018809 3'AG 152018809 Downstream 24bp 8364 chr5 139886446 139886446 1 + T G GBM 139886447 + 139886427 139886467 41 ACTTGCTGCTGGCTCGAGGTGCAAATAAAGAACATAGGAAC ACTTGCTGCTGGCTCGAGGGGCAAATAAAGAACATAGGAAC < 41bp 0.752058261521287 0.420492770115809 NA NA prediction 0.504116523042574 Functional Loss - ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139886447 chr5:139886446 synonymous SNV . 0 20 hm7G_associated_SNPs_8759 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139886420 3'AG 139886420 Downstream 27bp 8365 chr4 165722305 165722305 1 + T G UCEC 165722306 + 165722286 165722326 41 GTCTGAAAAGAAGAAAAATTGCTCAGAGGAAGAGCACAGAA GTCTGAAAAGAAGAAAAATGGCTCAGAGGAAGAGCACAGAA < 41bp 0.752003292301553 0.485933125505694 NA NA prediction 0.504006584603106 Functional Loss - LINC01207 ENSG00000248771 ncRNA_exonic Human protein_coding chr4:165722306 chr4:165722305 . . 0 20 hm7G_associated_SNPs_8761 0 0 0 0 1 LINC01207 chr4:165722243 3'AG 165722243 Downstream 63bp 8366 chrX 152611035 152611035 1 + T G UCEC 152611036 + 152611016 152611056 41 GCACAAGGACAAGTGCTACTGGTGTCAGACCCATCGCCCAA GCACAAGGACAAGTGCTACGGGTGTCAGACCCATCGCCCAA < 41bp 0.751972456868074 0.412909467075818 NA NA prediction 0.503944913736149 Functional Loss - ZNF275 ENSG00000063587 CDS Human protein_coding chrX:152611036 chrX:152611035 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_8762 0 0 1 0 1 ZNF275 chrX:152611079 5'GT 152611079 Upstream 45bp 8367 chr17 7399874 7399874 1 + T G UCEC 7399875 + 7399855 7399895 41 TGCGAGGGTGGGGAGGAGATGGACAACAAGTTCGGTGTGGA TGCGAGGGTGGGGAGGAGAGGGACAACAAGTTCGGTGTGGA < 41bp 0.875566623166655 0.623676031711957 NA NA prediction 0.503781182909396 Functional Loss - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7399875 chr17:7399874 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8763 0 0 1 0 1 POLR2A chr17:7399932 5'GT 7399932 Upstream 59bp 8368 chr9 93650153 93650153 1 + T G LUAD 93650154 + 93650134 93650174 41 TGTGGGAAGCATTCTCCTATGGGCAGAAGCCATATCGAGTG TGTGGGAAGCATTCTCCTAGGGGCAGAAGCCATATCGAGTG < 41bp 0.751877227940226 0.420420419662723 NA NA prediction 0.503754455880453 Functional Loss - SYK ENSG00000165025 CDS Human protein_coding chr9:93650154 chr9:93650153 stopgain 0.005 1 20 hm7G_associated_SNPs_8764 0 0 0 0 1 SYK chr9:93650171 5'GT 93650171 Upstream 19bp 8369 chr18 23895277 23895277 1 + T G UCEC 23895278 + 23895258 23895298 41 GCATCTTAGCAACAAACTCTGAATTGGTTGGCACACTCATT GCATCTTAGCAACAAACTCGGAATTGGTTGGCACACTCATT < 41bp 0.751826503153418 0.427717239108669 NA NA prediction 0.503653006306836 Functional Loss - TAF4B ENSG00000141384 CDS Human protein_coding chr18:23895278 chr18:23895277 synonymous SNV . 0 20 hm7G_associated_SNPs_8766 0 0 0 0 2 TAF4B chr18:23895193 3'AG 23895193 Downstream 85bp 8370 chr18 23895277 23895277 1 + T G UCEC 23895278 + 23895258 23895298 41 GCATCTTAGCAACAAACTCTGAATTGGTTGGCACACTCATT GCATCTTAGCAACAAACTCGGAATTGGTTGGCACACTCATT < 41bp 0.751826503153418 0.427717239108669 NA NA prediction 0.503653006306836 Functional Loss - TAF4B ENSG00000141384 CDS Human protein_coding chr18:23895278 chr18:23895277 synonymous SNV . 0 20 hm7G_associated_SNPs_8766 0 0 0 0 2 TAF4B chr18:23895362 5'GT 23895362 Upstream 86bp 8371 chr12 53345291 53345291 1 + T G SKCM 53345292 + 53345272 53345312 41 AAGGCCTACAAGCCCAGATTGCCAGCTCTGGGTTGACCGTG AAGGCCTACAAGCCCAGATGGCCAGCTCTGGGTTGACCGTG < 41bp 0.885235567148642 0.633497151931093 NA NA prediction 0.503476830435098 Functional Loss - KRT18 ENSG00000111057 CDS Human protein_coding chr12:53345292 chr12:53345291 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_8769 0 0 1 0 1 KRT18 chr12:53345265 3'AG 53345265 Downstream 27bp 8372 chr2 28627062 28627062 1 + T G BRCA 28627063 + 28627043 28627083 41 CAGGACCTGCAGTGGATGGTGCAGCCCACAGTGATCACCTC CAGGACCTGCAGTGGATGGGGCAGCCCACAGTGATCACCTC < 41bp 0.751682229767083 0.406439697845704 NA NA prediction 0.503364459534166 Functional Loss - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28627063 chr2:28627062 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8771 0 0 0 0 1 FOSL2 chr2:28626974 3'AG 28626974 Downstream 89bp 8373 chr2 71190344 71190344 1 + T G GBM 71190345 + 71190325 71190365 41 CGAGGGTTTCCTGGATATATGTACACAGACCTGGCCACCAT CGAGGGTTTCCTGGATATAGGTACACAGACCTGGCCACCAT < 41bp 0.872539745011625 0.620881288192643 NA NA prediction 0.503316913637964 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190345 chr2:71190344 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8772 0 0 0 0 2 ATP6V1B1 chr2:71190292 3'AG 71190292 Downstream 53bp 8374 chr2 71190344 71190344 1 + T G GBM 71190345 + 71190325 71190365 41 CGAGGGTTTCCTGGATATATGTACACAGACCTGGCCACCAT CGAGGGTTTCCTGGATATAGGTACACAGACCTGGCCACCAT < 41bp 0.872539745011625 0.620881288192643 NA NA prediction 0.503316913637964 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71190345 chr2:71190344 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8772 0 0 0 0 2 ATP6V1B1 chr2:71190442 5'GT 71190442 Upstream 99bp 8375 chr1 111861258 111861258 1 + T G rs61748619 111861259 + 111861239 111861279 41 CCTCTGGTGCTGGTCCTGCTGGGCCCTATGCCAAGGAGTCT CCTCTGGTGCTGGTCCTGCGGGGCCCTATGCCAAGGAGTCT < 41bp 0.876691697652973 0.625045454879601 NA NA prediction 0.503292485546744 Functional Loss - CHIA ENSG00000134216 CDS Human protein_coding chr1:111861259 chr1:111861258 synonymous SNV . 0 20 hm7G_associated_SNPs_8773 0 0 0 0 1 CHIA chr1:111861300 5'GT 111861300 Upstream 43bp 8376 chr12 10532331 10532331 1 - A C UCEC 10532330 - 10532310 10532350 41 GGAATCCGTTTCATTATTATGGTAACAATATGGAGTGCTGT GGAATCCGTTTCATTATTAGGGTAACAATATGGAGTGCTGT < 41bp 0.862672730729367 0.611124907138167 NA NA prediction 0.503095647182401 Functional Loss - KLRC4-KLRK1;KLRK1 ENSG00000213809 CDS Human other chr12:10532330 chr12:10532331 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_8774 0 0 0 0 2 KLRC4-KLRK1;KLRK1;LOC101928100 chr12:10532299 5'GT 10532299 Upstream 33bp 8377 chr12 10532331 10532331 1 - A C UCEC 10532330 - 10532310 10532350 41 GGAATCCGTTTCATTATTATGGTAACAATATGGAGTGCTGT GGAATCCGTTTCATTATTAGGGTAACAATATGGAGTGCTGT < 41bp 0.862672730729367 0.611124907138167 NA NA prediction 0.503095647182401 Functional Loss - KLRC4-KLRK1;KLRK1 ENSG00000213809 CDS Human protein_coding chr12:10532330 chr12:10532331 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_8774 0 0 0 0 2 KLRC4-KLRK1;KLRK1 chr12:10532391 3'AG 10532391 Downstream 61bp 8378 chr5 128362853 128362853 1 + T G UCEC 128362854 + 128362834 128362874 41 GGACTTCTCATTTCTCGAGTGAATGCAAAAAATCCCTTCTT GGACTTCTCATTTCTCGAGGGAATGCAAAAAATCCCTTCTT < 41bp 0.751459627757126 0.433127573365523 NA NA prediction 0.502919255514253 Functional Loss - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128362854 chr5:128362853 nonsynonymous SNV 0.763 4 20 hm7G_associated_SNPs_8777 0 0 1 0 1 SLC27A6 chr5:128362826 3'AG 128362826 Downstream 28bp 8379 chr10 6157423 6157423 1 + T G LUAD 6157424 + 6157404 6157444 41 TTTGCCTTTCAGCGGTTGTTGACTTGAATGGGAGGTATTTT TTTGCCTTTCAGCGGTTGTGGACTTGAATGGGAGGTATTTT < 41bp 0.839030405520097 0.587575055582611 NA NA prediction 0.502910699874971 Functional Loss - RBM17 ENSG00000134453 CDS Human protein_coding chr10:6157424 chr10:6157423 synonymous SNV . 0 20 hm7G_associated_SNPs_8778 0 0 1 0 1 RBM17 chr10:6157416 3'AG 6157416 Downstream 8bp 8380 chr11 76261093 76261093 1 + T G UCEC 76261094 + 76261074 76261114 41 AACTTCACTAGTCAACAGCTGGATGATGAGGAGACAGCAAT AACTTCACTAGTCAACAGCGGGATGATGAGGAGACAGCAAT < 41bp 0.829949348470662 0.578646666335585 NA NA prediction 0.502605364270155 Functional Loss - EMSY ENSG00000158636 CDS Human protein_coding chr11:76261094 chr11:76261093 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8780 0 0 1 0 1 EMSY chr11:76260996 3'AG 76260996 Downstream 98bp 8381 chr2 33036186 33036186 1 + T G rs563883018 33036187 + 33036167 33036207 41 GAAAGCTGCAGGAGTTATTTGGCAGAGTGACTTCAAGAGTG GAAAGCTGCAGGAGTTATTGGGCAGAGTGACTTCAAGAGTG < 41bp 0.751271131690539 0.418132311036687 NA NA prediction 0.502542263381077 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33036187 chr2:33036186 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_8781 0 0 1 1 1 TTC27 chr2:33036091 3'AG 33036091 Downstream 96bp 8382 chr20 2633234 2633234 1 + T G rs6115305 2633235 + 2633215 2633255 41 GGTCGGGGGGGCGGGGGCGTGGCCTCTGGAGCCTGGTTCCG GGTCGGGGGGGCGGGGGCGGGGCCTCTGGAGCCTGGTTCCG < 41bp 0.866714061328692 0.615471182244216 NA NA prediction 0.502485758168951 Functional Loss - NOP56 ENSG00000101361 UTR5 Human protein_coding chr20:2633235 chr20:2633234 . . 0 20 hm7G_associated_SNPs_8783 0 0 0 0 1 NOP56 chr20:2633309 5'GT 2633309 Upstream 76bp 8383 chr16 19471635 19471635 1 + T G GBM 19471636 + 19471616 19471656 41 AGGAACCAGCCAAGGACCATGGAAGAGAAAAGGAACCTTAG AGGAACCAGCCAAGGACCAGGGAAGAGAAAAGGAACCTTAG < 41bp 0.864823541508263 0.613628735162311 NA NA prediction 0.502389612691903 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19471636 chr16:19471635 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8784 0 0 0 0 3 TMC5 chr16:19471557 3'AG 19471557 Downstream 79bp 8384 chr16 19471635 19471635 1 + T G GBM 19471636 + 19471616 19471656 41 AGGAACCAGCCAAGGACCATGGAAGAGAAAAGGAACCTTAG AGGAACCAGCCAAGGACCAGGGAAGAGAAAAGGAACCTTAG < 41bp 0.864823541508263 0.613628735162311 NA NA prediction 0.502389612691903 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19471636 chr16:19471635 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8784 0 0 0 0 3 TMC5 chr16:19471562 3'AG 19471562 Downstream 74bp 8385 chr16 19471635 19471635 1 + T G GBM 19471636 + 19471616 19471656 41 AGGAACCAGCCAAGGACCATGGAAGAGAAAAGGAACCTTAG AGGAACCAGCCAAGGACCAGGGAAGAGAAAAGGAACCTTAG < 41bp 0.864823541508263 0.613628735162311 NA NA prediction 0.502389612691903 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19471636 chr16:19471635 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8784 0 0 0 0 3 TMC5 chr16:19471656 5'GT 19471656 Upstream 22bp 8386 chr14 75266314 75266314 1 + T G LGG 75266315 + 75266295 75266335 41 CCGATGCAAGCTTAGACTCTGACCAAGGCCTTGGAGGGGTA CCGATGCAAGCTTAGACTCGGACCAAGGCCTTGGAGGGGTA < 41bp 0.7511555552916 0.436490519117934 NA NA prediction 0.502311110583199 Functional Loss - YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75266315 chr14:75266314 synonymous SNV . 0 20 hm7G_associated_SNPs_8785 0 0 1 0 1 YLPM1 chr14:75266400 5'GT 75266400 Upstream 87bp 8387 chr4 74280802 74280802 1 + T G OV 74280803 + 74280783 74280823 41 GATTACTCTGTCGTGCTGCTGCTGAGACTTGCCAAGACATA GATTACTCTGTCGTGCTGCGGCTGAGACTTGCCAAGACATA < 41bp 0.866979567554024 0.615854177562975 NA NA prediction 0.502250779982098 Functional Loss - ALB ENSG00000163631 CDS Human protein_coding chr4:74280803 chr4:74280802 nonsynonymous SNV 0.314 3 20 hm7G_associated_SNPs_8786 0 0 1 8 2 ALB chr4:74280752 3'AG 74280752 Downstream 51bp 8388 chr4 74280802 74280802 1 + T G OV 74280803 + 74280783 74280823 41 GATTACTCTGTCGTGCTGCTGCTGAGACTTGCCAAGACATA GATTACTCTGTCGTGCTGCGGCTGAGACTTGCCAAGACATA < 41bp 0.866979567554024 0.615854177562975 NA NA prediction 0.502250779982098 Functional Loss - ALB ENSG00000163631 CDS Human protein_coding chr4:74280803 chr4:74280802 nonsynonymous SNV 0.314 3 20 hm7G_associated_SNPs_8786 0 0 1 8 2 ALB chr4:74280884 5'GT 74280884 Upstream 83bp 8389 chr8 17419465 17419465 1 + T G COAD 17419466 + 17419446 17419486 41 CCTGCAGCTTTCCTCGTGTTGGGCCTGAGTGTCTTGACCAC CCTGCAGCTTTCCTCGTGTGGGGCCTGAGTGTCTTGACCAC < 41bp 0.751107462616532 0.414620933987321 NA NA prediction 0.502214925233064 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17419466 chr8:17419465 nonsynonymous SNV 0.588 2 20 hm7G_associated_SNPs_8787 0 0 1 0 1 SLC7A2 chr8:17419453 3'AG 17419453 Downstream 13bp 8390 chrX 135291412 135291412 1 + T G UCEC 135291413 + 135291393 135291433 41 CATCCTCAGGGAAAAGGACTGTGTCAAGAGTGAGCCACCCA CATCCTCAGGGAAAAGGACGGTGTCAAGAGTGAGCCACCCA < 41bp 0.845381302013263 0.594324184763592 NA NA prediction 0.502114234499342 Functional Loss - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291413 chrX:135291412 synonymous SNV . 0 20 hm7G_associated_SNPs_8789 0 0 1 0 1 FHL1 chrX:135291402 3'AG 135291402 Downstream 11bp 8391 chr17 41001152 41001152 1 + T G STAD 41001153 + 41001133 41001173 41 TGGTGTTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCAC TGGTGTTTAAACCTGTGGCGGCCCCCTGGAACCCGGAGCAC < 41bp 0.878791223575038 0.627765875009413 NA NA prediction 0.50205069713125 Functional Loss - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001153 chr17:41001152 synonymous SNV . 0 20 hm7G_associated_SNPs_8790 0 0 1 0 1 AOC2 chr17:41001103 3'AG 41001103 Downstream 50bp 8392 chr18 9360030 9360030 1 + T G SKCM 9360031 + 9360011 9360051 41 CTGTAAGGAGTGCATGCTGTGTCTTGGGGCCCTTTGGGACG CTGTAAGGAGTGCATGCTGGGTCTTGGGGCCCTTTGGGACG < 41bp 0.79280659065591 0.541787784069566 NA NA prediction 0.502037613172689 Functional Loss - TWSG1 ENSG00000128791 CDS Human protein_coding chr18:9360031 chr18:9360030 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8791 0 0 1 0 2 TWSG1 chr18:9359970 3'AG 9359970 Downstream 61bp 8393 chr18 9360030 9360030 1 + T G SKCM 9360031 + 9360011 9360051 41 CTGTAAGGAGTGCATGCTGTGTCTTGGGGCCCTTTGGGACG CTGTAAGGAGTGCATGCTGGGTCTTGGGGCCCTTTGGGACG < 41bp 0.79280659065591 0.541787784069566 NA NA prediction 0.502037613172689 Functional Loss - TWSG1 ENSG00000128791 CDS Human protein_coding chr18:9360031 chr18:9360030 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8791 0 0 1 0 2 TWSG1 chr18:9360069 5'GT 9360069 Upstream 40bp 8394 chr12 42745782 42745782 1 + T G COAD 42745783 + 42745763 42745803 41 ATAGATATTACAGTCATGTTGATTACCGAGACTATGACGAG ATAGATATTACAGTCATGTGGATTACCGAGACTATGACGAG < 41bp 0.750849961901936 0.460545123250096 NA NA prediction 0.501699923803873 Functional Loss - PPHLN1 ENSG00000134283 CDS Human protein_coding chr12:42745783 chr12:42745782 synonymous SNV . 0 20 hm7G_associated_SNPs_8793 0 0 1 0 2 PPHLN1 chr12:42745687 3'AG 42745687 Downstream 96bp 8395 chr12 42745782 42745782 1 + T G COAD 42745783 + 42745763 42745803 41 ATAGATATTACAGTCATGTTGATTACCGAGACTATGACGAG ATAGATATTACAGTCATGTGGATTACCGAGACTATGACGAG < 41bp 0.750849961901936 0.460545123250096 NA NA prediction 0.501699923803873 Functional Loss - PPHLN1 ENSG00000134283 CDS Human protein_coding chr12:42745783 chr12:42745782 synonymous SNV . 0 20 hm7G_associated_SNPs_8793 0 0 1 0 2 PPHLN1 chr12:42745851 5'GT 42745851 Upstream 70bp 8396 chr12 6342629 6342629 1 + T G LIHC 6342630 + 6342610 6342650 41 TGAAATAGCTGCGGCCATCTGGGGATATTCCCACAAGGATG TGAAATAGCTGCGGCCATCGGGGGATATTCCCACAAGGATG < 41bp 0.875419088988702 0.624602351654745 NA NA prediction 0.501633474667915 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6342630 chr12:6342629 nonsynonymous SNV 0.933 4 20 hm7G_associated_SNPs_8795 0 0 1 0 2 CD9 chr12:6342578 3'AG 6342578 Downstream 52bp 8397 chr12 6342629 6342629 1 + T G LIHC 6342630 + 6342610 6342650 41 TGAAATAGCTGCGGCCATCTGGGGATATTCCCACAAGGATG TGAAATAGCTGCGGCCATCGGGGGATATTCCCACAAGGATG < 41bp 0.875419088988702 0.624602351654745 NA NA prediction 0.501633474667915 Functional Loss - CD9 ENSG00000010278 CDS Human protein_coding chr12:6342630 chr12:6342629 nonsynonymous SNV 0.933 4 20 hm7G_associated_SNPs_8795 0 0 1 0 2 CD9 chr12:6342652 5'GT 6342652 Upstream 24bp 8398 chr1 182812436 182812436 1 + T G BLCA 182812437 + 182812417 182812457 41 TTTTTTTTAAAGGTTCAGGTGGAAGGTTATAATTACACTGG TTTTTTTTAAAGGTTCAGGGGGAAGGTTATAATTACACTGG < 41bp 0.7507923173047 0.443925722727432 NA NA prediction 0.5015846346094 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182812437 chr1:182812436 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_8796 0 0 1 0 1 DHX9 chr1:182812429 3'AG 182812429 Downstream 8bp 8399 chr1 95307561 95307561 1 + T G SKCM 95307562 + 95307542 95307582 41 GTTCTCTTTTCTAGTTGTCTGCGGTGTTTTATGGTGGCTGT GTTCTCTTTTCTAGTTGTCGGCGGTGTTTTATGGTGGCTGT < 41bp 0.750786725470395 0.431081277997979 NA NA prediction 0.50157345094079 Functional Loss - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95307562 chr1:95307561 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_8797 0 0 0 2 1 SLC44A3 chr1:95307556 3'AG 95307556 Downstream 6bp 8400 chr3 41266110 41266110 1 - A C LIHC 41266109 - 41266089 41266129 41 TGTGGTAGTGGCACCAGAATGGATTCCAGAGTCCAGGTAAG TGTGGTAGTGGCACCAGAAGGGATTCCAGAGTCCAGGTAAG < 41bp 0.861852291263093 0.611121019016129 NA NA prediction 0.501462544493928 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41266109 chr3:41266110 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8800 0 0 0 0 1 CTNNB1 chr3:41266094 5'GT 41266094 Upstream 17bp 8401 chr2 75108866 75108866 1 + T G COAD 75108867 + 75108847 75108887 41 ACTTCTTGGCCTTGGACCTTGGAGGAACAAATTTCCGGGTC ACTTCTTGGCCTTGGACCTGGGAGGAACAAATTTCCGGGTC < 41bp 0.750715794291153 0.410335330114615 NA NA prediction 0.501431588582306 Functional Loss - HK2 ENSG00000159399 CDS Human protein_coding chr2:75108867 chr2:75108866 synonymous SNV . 0 20 hm7G_associated_SNPs_8801 0 0 1 0 1 HK2 chr2:75108838 3'AG 75108838 Downstream 29bp 8402 chr2 109102173 109102173 1 + T G UCEC 109102174 + 109102154 109102194 41 GTGAAAACCAAAAAGGAACTGGCAGATTCAAAGCAAGCAGT GTGAAAACCAAAAAGGAACGGGCAGATTCAAAGCAAGCAGT < 41bp 0.750675341728759 0.436516545335888 NA NA prediction 0.501350683457519 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109102174 chr2:109102173 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8804 0 0 1 0 2 GCC2 chr2:109102092 3'AG 109102092 Downstream 82bp 8403 chr2 109102173 109102173 1 + T G UCEC 109102174 + 109102154 109102194 41 GTGAAAACCAAAAAGGAACTGGCAGATTCAAAGCAAGCAGT GTGAAAACCAAAAAGGAACGGGCAGATTCAAAGCAAGCAGT < 41bp 0.750675341728759 0.436516545335888 NA NA prediction 0.501350683457519 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109102174 chr2:109102173 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8804 0 0 1 0 2 GCC2 chr2:109102192 5'GT 109102192 Upstream 20bp 8404 chr16 66974391 66974391 1 + T G rs111381920 66974392 + 66974372 66974412 41 GCTACCTGGACCAAGTGGCTGCACTACGCTGGGTCCAGCAG GCTACCTGGACCAAGTGGCGGCACTACGCTGGGTCCAGCAG < 41bp 0.889201309924264 0.63872104571414 NA NA prediction 0.500960528420248 Functional Loss - CES2 ENSG00000172831 CDS Human protein_coding chr16:66974392 chr16:66974391 synonymous SNV . 0 20 hm7G_associated_SNPs_8807 0 0 1 0 1 CES2 chr16:66974340 3'AG 66974340 Downstream 52bp 8405 chr6 150263283 150263283 1 + T G KIRP 150263284 + 150263264 150263304 41 TGTCCGGCTGGTCCCGGGCTGGGCGAGCCGGTGAGTTCGTG TGTCCGGCTGGTCCCGGGCGGGGCGAGCCGGTGAGTTCGTG < 41bp 0.85263500934728 0.602270301667697 NA NA prediction 0.500729415359166 Functional Loss - ULBP2 ENSG00000131015 CDS Human protein_coding chr6:150263284 chr6:150263283 synonymous SNV . 0 20 hm7G_associated_SNPs_8809 0 0 0 0 1 ULBP2 chr6:150263293 5'GT 150263293 Upstream 11bp 8406 chr10 19856477 19856477 1 + T G ESCA 19856478 + 19856458 19856498 41 AACATCCTGGTGTGGTCAGTGATTGGAAATAAAAGAACGGG AACATCCTGGTGTGGTCAGGGATTGGAAATAAAAGAACGGG < 41bp 0.750363278730703 0.439902832510297 NA NA prediction 0.500726557461405 Functional Loss - MALRD1 ENSG00000204740 CDS Human protein_coding chr10:19856478 chr10:19856477 nonsynonymous SNV 0.467 0 20 hm7G_associated_SNPs_8810 0 0 1 0 1 MALRD1 chr10:19856431 3'AG 19856431 Downstream 47bp 8407 chr1 248031151 248031151 1 + T G SKCM 248031152 + 248031132 248031172 41 TTCTTTCCTTTTCAGGGTGTGAGAGGAGTCCTGAGCAGGTA TTCTTTCCTTTTCAGGGTGGGAGAGGAGTCCTGAGCAGGTA < 41bp 0.855563946360712 0.605210745778924 NA NA prediction 0.500706401163576 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248031152 chr1:248031151 nonsynonymous SNV 0.024 1 20 hm7G_associated_SNPs_8811 0 0 1 0 1 TRIM58 chr1:248031169 5'GT 248031169 Upstream 19bp 8408 chr11 5009484 5009484 1 + T G ESCA 5009485 + 5009465 5009505 41 TACTATCTTCTTGCCCTGGTGTTTCGCCGTTCCAGTGCCCC TACTATCTTCTTGCCCTGGGGTTTCGCCGTTCCAGTGCCCC < 41bp 0.859585755836418 0.609232746296885 NA NA prediction 0.500706019079066 Functional Loss - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5009485 chr11:5009484 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_8812 0 0 0 0 1 MMP26 chr11:5009540 5'GT 5009540 Upstream 57bp 8409 chr7 129948219 129948219 1 + T G PCPG 129948220 + 129948200 129948240 41 TGCTGACCCAAATAGAAACTGGAACGCTAGTTTTGCAGGTA TGCTGACCCAAATAGAAACGGGAACGCTAGTTTTGCAGGTA < 41bp 0.881124325640988 0.630881958350584 NA NA prediction 0.500484734580807 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948220 chr7:129948219 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_8813 0 0 1 0 2 CPA4 chr7:129948147 3'AG 129948147 Downstream 73bp 8410 chr7 129948219 129948219 1 + T G PCPG 129948220 + 129948200 129948240 41 TGCTGACCCAAATAGAAACTGGAACGCTAGTTTTGCAGGTA TGCTGACCCAAATAGAAACGGGAACGCTAGTTTTGCAGGTA < 41bp 0.881124325640988 0.630881958350584 NA NA prediction 0.500484734580807 Functional Loss - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948220 chr7:129948219 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_8813 0 0 1 0 2 CPA4 chr7:129948237 5'GT 129948237 Upstream 19bp 8411 chr7 152549213 152549213 1 + T G OV 152549214 + 152549194 152549234 41 TGCTTTGTGTCTTGTAGAATGTCGTACTCTCAGGAGGCTCC TGCTTTGTGTCTTGTAGAAGGTCGTACTCTCAGGAGGCTCC < 41bp 0.750116011431977 0.423513666745511 NA NA prediction 0.500232022863954 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152549214 chr7:152549213 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_8817 0 0 1 0 1 ACTR3B chr7:152549211 3'AG 152549211 Downstream 3bp 8412 chr10 27012764 27012764 1 + T G UCEC 27012765 + 27012745 27012785 41 CTGGAGATTTAATTCTTTCTGCAGCATCTATAGCTCTGGCA CTGGAGATTTAATTCTTTCGGCAGCATCTATAGCTCTGGCA < 41bp 0.870484904854701 0.620544572812654 NA NA prediction 0.499880664084094 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:27012765 chr10:27012764 synonymous SNV . 0 20 hm7G_associated_SNPs_8819 0 0 1 0 2 PDSS1 chr10:27012735 3'AG 27012735 Downstream 30bp 8413 chr10 27012764 27012764 1 + T G UCEC 27012765 + 27012745 27012785 41 CTGGAGATTTAATTCTTTCTGCAGCATCTATAGCTCTGGCA CTGGAGATTTAATTCTTTCGGCAGCATCTATAGCTCTGGCA < 41bp 0.870484904854701 0.620544572812654 NA NA prediction 0.499880664084094 Functional Loss - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:27012765 chr10:27012764 synonymous SNV . 0 20 hm7G_associated_SNPs_8819 0 0 1 0 2 PDSS1 chr10:27012846 5'GT 27012846 Upstream 83bp 8414 chr22 18593607 18593607 1 + T G rs562885013 18593608 + 18593588 18593628 41 GGCAGGCCCAGCTGAGAGGTGCGCGGGCGAGGACAGCGGCA GGCAGGCCCAGCTGAGAGGGGCGCGGGCGAGGACAGCGGCA < 41bp 0.749878577207549 0.426929582876003 NA NA prediction 0.499757154415098 Functional Loss - TUBA8 ENSG00000183785 splicing Human protein_coding chr22:18593608 chr22:18593607 . . 0 20 hm7G_associated_SNPs_8820 0 0 0 0 1 TUBA8 chr22:18593634 5'GT 18593634 Upstream 28bp 8415 chr9 135942540 135942540 1 + T G UCEC 135942541 + 135942521 135942561 41 CCCAGTGTCTGAAGGTTACTGATCCCCGAGCCCTGACGCTG CCCAGTGTCTGAAGGTTACGGATCCCCGAGCCCTGACGCTG < 41bp 0.88472528549082 0.634880269529277 NA NA prediction 0.499690031923087 Functional Loss - CEL ENSG00000170835 CDS Human protein_coding chr9:135942541 chr9:135942540 synonymous SNV . 0 20 hm7G_associated_SNPs_8821 0 0 0 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 66bp 8416 chr3 183906190 183906190 1 + T G UCEC 183906191 + 183906171 183906211 41 TCACTGCCCAGATTGCTGCTGGCAGGTGAGGACTCCCGGCT TCACTGCCCAGATTGCTGCGGGCAGGTGAGGACTCCCGGCT < 41bp 0.883317817071038 0.633487227217046 NA NA prediction 0.499661179707985 Functional Loss - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906191 chr3:183906190 synonymous SNV . 0 20 hm7G_associated_SNPs_8822 0 0 1 0 1 ABCF3 chr3:183906195 5'GT 183906195 Upstream 6bp 8417 chr13 96205164 96205164 1 + T G SKCM 96205165 + 96205145 96205185 41 GGCCAACCTGTGGAAGGCGTGCGTTACCGACTCCACGGGCG GGCCAACCTGTGGAAGGCGGGCGTTACCGACTCCACGGGCG < 41bp 0.749776402929442 0.429717771327775 NA NA prediction 0.499552805858884 Functional Loss - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96205165 chr13:96205164 nonsynonymous SNV 0.947 5 20 hm7G_associated_SNPs_8824 0 0 0 0 1 CLDN10 chr13:96205227 5'GT 96205227 Upstream 64bp 8418 chr3 32927553 32927553 1 + T G COAD 32927554 + 32927534 32927574 41 GAACGCGAGTGTGAGCTGCTGTGGAAGGTAACAGGGAGAGC GAACGCGAGTGTGAGCTGCGGTGGAAGGTAACAGGGAGAGC < 41bp 0.872168232659217 0.622406330075559 NA NA prediction 0.499523805167315 Functional Loss - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32927554 chr3:32927553 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_8825 0 0 1 0 1 TRIM71 chr3:32927560 5'GT 32927560 Upstream 8bp 8419 chr2 29225480 29225480 1 + T G COAD 29225481 + 29225461 29225501 41 GCCACCTCTCAGAGGCTGCTGAGGGTGCCCAGGCCGATGCC GCCACCTCTCAGAGGCTGCGGAGGGTGCCCAGGCCGATGCC < 41bp 0.749683859146629 0.400330091502628 NA NA prediction 0.499367718293259 Functional Loss - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29225481 chr2:29225480 nonsynonymous SNV 0.603 3 20 hm7G_associated_SNPs_8827 0 0 0 0 1 TOGARAM2 chr2:29225402 3'AG 29225402 Downstream 79bp 8420 chr17 40642597 40642597 1 + T G BLCA 40642598 + 40642578 40642618 41 AAACCAACAAGTTTACCTATGGCTTTCAGAACATAGTAGAT AAACCAACAAGTTTACCTAGGGCTTTCAGAACATAGTAGAT < 41bp 0.749668029351838 0.427198774447591 NA NA prediction 0.499336058703675 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40642598 chr17:40642597 stopgain 0.789 0 20 hm7G_associated_SNPs_8828 0 0 1 0 2 ATP6V0A1 chr17:40642505 3'AG 40642505 Downstream 93bp 8421 chr17 40642597 40642597 1 + T G BLCA 40642598 + 40642578 40642618 41 AAACCAACAAGTTTACCTATGGCTTTCAGAACATAGTAGAT AAACCAACAAGTTTACCTAGGGCTTTCAGAACATAGTAGAT < 41bp 0.749668029351838 0.427198774447591 NA NA prediction 0.499336058703675 Functional Loss - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40642598 chr17:40642597 stopgain 0.789 0 20 hm7G_associated_SNPs_8828 0 0 1 0 2 ATP6V0A1 chr17:40642655 5'GT 40642655 Upstream 59bp 8422 chr19 36585017 36585017 1 + T G rs372089440 36585018 + 36584998 36585038 41 ATGATCTGGAGGAAGAGTGTGAGCCAGAAGAGATGCTGAAG ATGATCTGGAGGAAGAGTGGGAGCCAGAAGAGATGCTGAAG < 41bp 0.8815702636139 0.631908109987666 NA NA prediction 0.49932430725247 Functional Loss - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36585018 chr19:36585017 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_8829 0 0 1 0 2 WDR62 chr19:36584933 3'AG 36584933 Downstream 85bp 8423 chr19 36585017 36585017 1 + T G rs372089440 36585018 + 36584998 36585038 41 ATGATCTGGAGGAAGAGTGTGAGCCAGAAGAGATGCTGAAG ATGATCTGGAGGAAGAGTGGGAGCCAGAAGAGATGCTGAAG < 41bp 0.8815702636139 0.631908109987666 NA NA prediction 0.49932430725247 Functional Loss - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36585018 chr19:36585017 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_8829 0 0 1 0 2 WDR62 chr19:36585066 5'GT 36585066 Upstream 50bp 8424 chr2 211502530 211502530 1 + T G LUSC 211502531 + 211502511 211502551 41 GAGGCCCAGACAAGGGAGCTGAGGTTAAAGAAAAACATCCA GAGGCCCAGACAAGGGAGCGGAGGTTAAAGAAAAACATCCA < 41bp 0.749640930942997 0.424998006924248 NA NA prediction 0.499281861885994 Functional Loss - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211502531 chr2:211502530 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_8830 0 0 0 0 1 CPS1 chr2:211502567 5'GT 211502567 Upstream 38bp 8425 chr19 22785299 22785299 1 + T G rs11670278 22785300 + 22785280 22785320 41 CCCACCGGGCCCTGCAGGGTGCCATGGAGAAACTGCAGGTG CCCACCGGGCCCTGCAGGGGGCCATGGAGAAACTGCAGGTG < 41bp 0.850639844655019 0.601028398843549 NA NA prediction 0.499222891622941 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785300 chr19:22785299 . . 0 20 hm7G_associated_SNPs_8832 0 0 0 0 1 GOLGA2P9 chr19:22785317 5'GT 22785317 Upstream 19bp 8426 chr4 39064620 39064620 1 + T G PRAD 39064621 + 39064601 39064641 41 AAGTGGATGATGGCACTAGTGAAGAAGAAAATGAATCTGAT AAGTGGATGATGGCACTAGGGAAGAAGAAAATGAATCTGAT < 41bp 0.74959360392723 0.448076340572938 NA NA prediction 0.49918720785446 Functional Loss - KLHL5 ENSG00000109790 CDS Human protein_coding chr4:39064621 chr4:39064620 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8833 0 0 0 0 1 KLHL5 chr4:39064655 5'GT 39064655 Upstream 36bp 8427 chr19 48198255 48198255 1 + T G SKCM 48198256 + 48198236 48198276 41 TCACCAGCCCCGCTGCGTCTGTGCTGGTCAGTGGGCAGGCC TCACCAGCCCCGCTGCGTCGGTGCTGGTCAGTGGGCAGGCC < 41bp 0.749591952240352 0.410145665882478 NA NA prediction 0.499183904480703 Functional Loss - BICRA ENSG00000063169 CDS Human protein_coding chr19:48198256 chr19:48198255 synonymous SNV . 0 20 hm7G_associated_SNPs_8834 0 0 0 0 2 BICRA chr19:48198157 3'AG 48198157 Downstream 99bp 8428 chr19 48198255 48198255 1 + T G SKCM 48198256 + 48198236 48198276 41 TCACCAGCCCCGCTGCGTCTGTGCTGGTCAGTGGGCAGGCC TCACCAGCCCCGCTGCGTCGGTGCTGGTCAGTGGGCAGGCC < 41bp 0.749591952240352 0.410145665882478 NA NA prediction 0.499183904480703 Functional Loss - BICRA ENSG00000063169 CDS Human protein_coding chr19:48198256 chr19:48198255 synonymous SNV . 0 20 hm7G_associated_SNPs_8834 0 0 0 0 2 BICRA chr19:48198337 5'GT 48198337 Upstream 83bp 8429 chrX 69670620 69670620 1 + T G COAD 69670621 + 69670601 69670641 41 ACGACATGTACGCTCCCCCTGACTACGCCAGCAGTACGTAC ACGACATGTACGCTCCCCCGGACTACGCCAGCAGTACGTAC < 41bp 0.749583352131102 0.398303749093905 NA NA prediction 0.499166704262204 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69670621 chrX:69670620 synonymous SNV . 0 20 hm7G_associated_SNPs_8835 0 0 0 0 1 DLG3 chrX:69670633 5'GT 69670633 Upstream 14bp 8430 chr17 28887662 28887662 1 + T G UCEC 28887663 + 28887643 28887683 41 CGGGCTCACCCCGTGCCTGTGGGATATGTATTTGCTGGAAG CGGGCTCACCCCGTGCCTGGGGGATATGTATTTGCTGGAAG < 41bp 0.74954750977164 0.406167520623673 NA NA prediction 0.49909501954328 Functional Loss - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887663 chr17:28887662 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_8836 0 0 0 0 2 TBC1D29 chr17:28887635 3'AG 28887635 Downstream 28bp 8431 chr17 28887662 28887662 1 + T G UCEC 28887663 + 28887643 28887683 41 CGGGCTCACCCCGTGCCTGTGGGATATGTATTTGCTGGAAG CGGGCTCACCCCGTGCCTGGGGGATATGTATTTGCTGGAAG < 41bp 0.74954750977164 0.406167520623673 NA NA prediction 0.49909501954328 Functional Loss - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887663 chr17:28887662 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_8836 0 0 0 0 2 TBC1D29 chr17:28887734 5'GT 28887734 Upstream 73bp 8432 chr11 18726078 18726078 1 - A C UCEC 18726077 - 18726057 18726097 41 TTGCTCTTTCAGACAAAGATGATAAGTCAGTTGTAGCATCC TTGCTCTTTCAGACAAAGAGGATAAGTCAGTTGTAGCATCC < 41bp 0.854437759665325 0.604972986525783 NA NA prediction 0.498929546279084 Functional Loss - IGSF22 ENSG00000179057 CDS Human protein_coding chr11:18726077 chr11:18726078 nonsynonymous SNV 0.178 0 20 hm7G_associated_SNPs_8837 0 0 0 0 1 IGSF22 chr11:18726085 3'AG 18726085 Downstream 8bp 8433 chr11 119170269 119170269 1 + T G UCEC 119170270 + 119170250 119170290 41 TCCCGCGGAGAATCAACTCTGAACGGAAAGCTGGCAGCTGT TCCCGCGGAGAATCAACTCGGAACGGAAAGCTGGCAGCTGT < 41bp 0.855676886330514 0.606228183339983 NA NA prediction 0.498897405981062 Functional Loss - CBL ENSG00000110395 CDS Human protein_coding chr11:119170270 chr11:119170269 synonymous SNV . 0 20 hm7G_associated_SNPs_8838 0 0 1 0 1 CBL chr11:119170205 3'AG 119170205 Downstream 65bp 8434 chrX 74494470 74494470 1 + T G rs4892396 74494471 + 74494451 74494491 41 AGCTACAGACCATCATCCGTGACAAGTAAGCCAAGAGCGGA AGCTACAGACCATCATCCGGGACAAGTAAGCCAAGAGCGGA < 41bp 0.749394843463907 0.434489664872733 NA NA prediction 0.498789686927813 Functional Loss - UPRT ENSG00000094841 CDS Human protein_coding chrX:74494471 chrX:74494470 synonymous SNV . 0 20 hm7G_associated_SNPs_8841 0 0 0 0 1 UPRT chrX:74494475 5'GT 74494475 Upstream 6bp 8435 chr12 124192187 124192187 1 + T G COAD 124192188 + 124192168 124192208 41 TGTGTTGCTAAGGGCTTACTGTTGCTGTTGTTCCTCACATT TGTGTTGCTAAGGGCTTACGGTTGCTGTTGTTCCTCACATT < 41bp 0.749355720728544 0.440902512680627 NA NA prediction 0.498711441457088 Functional Loss - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124192188 chr12:124192187 nonsynonymous SNV 0.043 2 20 hm7G_associated_SNPs_8842 0 0 1 0 1 TCTN2 chr12:124192151 3'AG 124192151 Downstream 37bp 8436 chr3 38012957 38012957 1 + T G LUSC 38012958 + 38012938 38012978 41 AGAGGATGGGGCAGCTTTTTGAATGTGTGCTCTTTACTGCC AGAGGATGGGGCAGCTTTTGGAATGTGTGCTCTTTACTGCC < 41bp 0.749350504945133 0.41595109698837 NA NA prediction 0.498701009890266 Functional Loss - CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38012958 chr3:38012957 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_8843 0 0 1 8 2 CTDSPL chr3:38012898 3'AG 38012898 Downstream 60bp 8437 chr3 38012957 38012957 1 + T G LUSC 38012958 + 38012938 38012978 41 AGAGGATGGGGCAGCTTTTTGAATGTGTGCTCTTTACTGCC AGAGGATGGGGCAGCTTTTGGAATGTGTGCTCTTTACTGCC < 41bp 0.749350504945133 0.41595109698837 NA NA prediction 0.498701009890266 Functional Loss - CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38012958 chr3:38012957 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_8843 0 0 1 8 2 CTDSPL chr3:38012990 5'GT 38012990 Upstream 34bp 8438 chr4 187172790 187172790 1 + T G UCEC 187172791 + 187172771 187172811 41 TTCTTTACTCCCAGAAGACTGTAAGGAAGAGAAGTAAAGGA TTCTTTACTCCCAGAAGACGGTAAGGAAGAGAAGTAAAGGA < 41bp 0.846117609989741 0.596772671679505 NA NA prediction 0.498689876620473 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187172791 chr4:187172790 nonsynonymous SNV 0.512 5 20 hm7G_associated_SNPs_8844 0 0 0 0 1 KLKB1 chr4:187172803 5'GT 187172803 Upstream 14bp 8439 chr15 78882211 78882211 1 + T G SKCM 78882212 + 78882192 78882232 41 GTACAATGGCACTGTCACCTGGACTCCACCGGCAAACTACA GTACAATGGCACTGTCACCGGGACTCCACCGGCAAACTACA < 41bp 0.869676201949711 0.62041125446756 NA NA prediction 0.498529894964303 Functional Loss - CHRNA5 ENSG00000169684 CDS Human protein_coding chr15:78882212 chr15:78882211 nonsynonymous SNV 0.748 4 20 hm7G_associated_SNPs_8846 0 0 1 0 1 CHRNA5 chr15:78882147 3'AG 78882147 Downstream 65bp 8440 chr4 185615768 185615768 1 + T G rs3184982 185615769 + 185615749 185615789 41 CTAGCAGGCTGTCAACAGGTGCATCTGCTGATGCTGTCTGG CTAGCAGGCTGTCAACAGGGGCATCTGCTGATGCTGTCTGG < 41bp 0.853484688725909 0.60423564809216 NA NA prediction 0.498498081267498 Functional Loss - PRIMPOL ENSG00000164306 CDS Human protein_coding chr4:185615769 chr4:185615768 synonymous SNV . 0 20 hm7G_associated_SNPs_8847 0 0 1 0 1 PRIMPOL chr4:185615676 3'AG 185615676 Downstream 93bp 8441 chr19 45974102 45974102 1 + T G OV 45974103 + 45974083 45974123 41 GCATGAGTGGCTACAGCAGTGGCGGAGCGAGTGGCAGTGGT GCATGAGTGGCTACAGCAGGGGCGGAGCGAGTGGCAGTGGT < 41bp 0.884348184058659 0.63509976723955 NA NA prediction 0.498496833638218 Functional Loss - FOSB ENSG00000125740 CDS Human protein_coding chr19:45974103 chr19:45974102 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8848 0 0 0 0 1 FOSB chr19:45974004 3'AG 45974004 Downstream 99bp 8442 chr19 46733560 46733560 1 + T G rs187146043 46733561 + 46733541 46733581 41 GACTCCTTACCTGATGCTGTGCCAGCCACACAAGAGATGTG GACTCCTTACCTGATGCTGGGCCAGCCACACAAGAGATGTG < 41bp 0.872675977925598 0.623445989571242 NA NA prediction 0.498459976708712 Functional Loss - IGFL1 ENSG00000188293 CDS Human protein_coding chr19:46733561 chr19:46733560 nonsynonymous SNV 0.023 3 20 hm7G_associated_SNPs_8849 0 0 0 0 1 IGFL1 chr19:46733531 3'AG 46733531 Downstream 30bp 8443 chr18 74968148 74968148 1 + T G rs148677424 74968149 + 74968129 74968169 41 CATAAAAAGTTGAAGAACATGTCAAAGAAGTCTGAAGCATC CATAAAAAGTTGAAGAACAGGTCAAAGAAGTCTGAAGCATC < 41bp 0.848332853993762 0.599251338383884 NA NA prediction 0.498163031219757 Functional Loss - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74968149 chr18:74968148 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8851 0 0 0 0 2 GALR1 chr18:74968114 3'AG 74968114 Downstream 35bp 8444 chr18 74968148 74968148 1 + T G rs148677424 74968149 + 74968129 74968169 41 CATAAAAAGTTGAAGAACATGTCAAAGAAGTCTGAAGCATC CATAAAAAGTTGAAGAACAGGTCAAAGAAGTCTGAAGCATC < 41bp 0.848332853993762 0.599251338383884 NA NA prediction 0.498163031219757 Functional Loss - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74968149 chr18:74968148 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8851 0 0 0 0 2 GALR1 chr18:74968179 5'GT 74968179 Upstream 32bp 8445 chr5 141353252 141353252 1 + T G rs112321759 141353253 + 141353233 141353273 41 AAGCAGAGTCTGTCCAAGGTGGAGAAACCAGGATCTATTTG AAGCAGAGTCTGTCCAAGGGGGAGAAACCAGGATCTATTTG < 41bp 0.861336315330502 0.612375362331125 NA NA prediction 0.497921905998754 Functional Loss - RNF14 ENSG00000013561 CDS Human protein_coding chr5:141353253 chr5:141353252 synonymous SNV . 0 20 hm7G_associated_SNPs_8856 0 0 0 0 1 RNF14 chr5:141353307 5'GT 141353307 Upstream 56bp 8446 chr22 44386179 44386179 1 + T G SKCM 44386180 + 44386160 44386200 41 CTCATATTCGTAAGCTGGCTGAGTGCATCCGCTGGTCGTAC CTCATATTCGTAAGCTGGCGGAGTGCATCCGCTGGTCGTAC < 41bp 0.874068377316611 0.625489641145297 NA NA prediction 0.497157472342629 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44386180 chr22:44386179 synonymous SNV . 0 20 hm7G_associated_SNPs_8861 0 0 1 0 1 SAMM50 chr22:44386145 3'AG 44386145 Downstream 35bp 8447 chr20 56137252 56137252 1 + T G LUSC 56137253 + 56137233 56137273 41 AGCCAGCTCGGTCGCTGGATGTCAGAGGAGGATTTTGAGAA AGCCAGCTCGGTCGCTGGAGGTCAGAGGAGGATTTTGAGAA < 41bp 0.869232120484187 0.620708147576027 NA NA prediction 0.497047945816321 Functional Loss - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56137253 chr20:56137252 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8863 0 0 0 0 1 PCK1 chr20:56137308 5'GT 56137308 Upstream 57bp 8448 chr7 128484124 128484124 1 + T G UCEC 128484125 + 128484105 128484145 41 GCTGGCGGTCAGGGCCAACTGGATGTGCGGATGACTTCGCC GCTGGCGGTCAGGGCCAACGGGATGTGCGGATGACTTCGCC < 41bp 0.74846873193281 0.397632310757457 NA NA prediction 0.496937463865621 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128484125 chr7:128484124 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_8864 0 0 1 0 1 FLNC chr7:128484058 3'AG 128484058 Downstream 67bp 8449 chr4 154318460 154318460 1 + T G rs34155513 154318461 + 154318441 154318481 41 TAGAAAAATACAAAGACTGTGATCCGCAAGTTGTGGAAGAA TAGAAAAATACAAAGACTGGGATCCGCAAGTTGTGGAAGAA < 41bp 0.860296888834387 0.611853063511129 NA NA prediction 0.496887650646516 Functional Loss - MND1 ENSG00000121211 CDS Human protein_coding chr4:154318461 chr4:154318460 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_8866 0 0 1 0 2 MND1 chr4:154318371 3'AG 154318371 Downstream 90bp 8450 chr4 154318460 154318460 1 + T G rs34155513 154318461 + 154318441 154318481 41 TAGAAAAATACAAAGACTGTGATCCGCAAGTTGTGGAAGAA TAGAAAAATACAAAGACTGGGATCCGCAAGTTGTGGAAGAA < 41bp 0.860296888834387 0.611853063511129 NA NA prediction 0.496887650646516 Functional Loss - MND1 ENSG00000121211 CDS Human protein_coding chr4:154318461 chr4:154318460 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_8866 0 0 1 0 2 MND1 chr4:154318485 5'GT 154318485 Upstream 26bp 8451 chr16 67286737 67286737 1 + T G BLCA 67286738 + 67286718 67286758 41 TCTGGGGCTTGCAGCAGGCTGGACTTGTAGGTGAGTGACCC TCTGGGGCTTGCAGCAGGCGGGACTTGTAGGTGAGTGACCC < 41bp 0.864956255323494 0.616559865483381 NA NA prediction 0.496792779680228 Functional Loss - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67286738 chr16:67286737 synonymous SNV . 0 20 hm7G_associated_SNPs_8868 0 0 1 0 1 SLC9A5 chr16:67286747 5'GT 67286747 Upstream 11bp 8452 chr9 140126537 140126537 1 + T G UCEC 140126538 + 140126518 140126558 41 CCACAGGGACCTCCAGTTCTGCTCCAGTCTTGGAGGAAGGG CCACAGGGACCTCCAGTTCGGCTCCAGTCTTGGAGGAAGGG < 41bp 0.779253872025972 0.530945421878623 NA NA prediction 0.496616900294698 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140126538 chr9:140126537 synonymous SNV . 0 20 hm7G_associated_SNPs_8869 0 0 0 0 2 SLC34A3 chr9:140126524 3'AG 140126524 Downstream 14bp 8453 chr9 140126537 140126537 1 + T G UCEC 140126538 + 140126518 140126558 41 CCACAGGGACCTCCAGTTCTGCTCCAGTCTTGGAGGAAGGG CCACAGGGACCTCCAGTTCGGCTCCAGTCTTGGAGGAAGGG < 41bp 0.779253872025972 0.530945421878623 NA NA prediction 0.496616900294698 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140126538 chr9:140126537 synonymous SNV . 0 20 hm7G_associated_SNPs_8869 0 0 0 0 2 SLC34A3 chr9:140126613 5'GT 140126613 Upstream 77bp 8454 chr20 42271134 42271134 1 + T G LUAD 42271135 + 42271115 42271155 41 TTAGGTACTGAAGAAGACCTGGAATTTTATGTCAGGAAGTG TTAGGTACTGAAGAAGACCGGGAATTTTATGTCAGGAAGTG < 41bp 0.860875326673431 0.612610124751978 NA NA prediction 0.496530403842906 Functional Loss - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271135 chr20:42271134 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_8870 0 0 0 0 1 IFT52 chr20:42271119 3'AG 42271119 Downstream 16bp 8455 chr8 87153719 87153719 1 + T G LUSC 87153720 + 87153700 87153740 41 TGTCTGAAAATGCTCTAGATGAACTGAATATTGAATTGCTA TGTCTGAAAATGCTCTAGAGGAACTGAATATTGAATTGCTA < 41bp 0.858156359176078 0.609921978566358 NA NA prediction 0.49646876121944 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87153720 chr8:87153719 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_8871 0 0 0 0 2 ATP6V0D2 chr8:87153679 3'AG 87153679 Downstream 41bp 8456 chr8 87153719 87153719 1 + T G LUSC 87153720 + 87153700 87153740 41 TGTCTGAAAATGCTCTAGATGAACTGAATATTGAATTGCTA TGTCTGAAAATGCTCTAGAGGAACTGAATATTGAATTGCTA < 41bp 0.858156359176078 0.609921978566358 NA NA prediction 0.49646876121944 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87153720 chr8:87153719 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_8871 0 0 0 0 2 ATP6V0D2 chr8:87153758 5'GT 87153758 Upstream 40bp 8457 chr13 102250520 102250520 1 + T G LIHC 102250521 + 102250501 102250541 41 AGGTCATGGACAGTGTAATTGCGGAAGATGTGACTGCAAAG AGGTCATGGACAGTGTAATGGCGGAAGATGTGACTGCAAAG < 41bp 0.748166190893034 0.417128148390078 NA NA prediction 0.496332381786068 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102250521 chr13:102250520 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_8872 0 0 0 0 1 ITGBL1 chr13:102250503 3'AG 102250503 Downstream 18bp 8458 chr1 201828048 201828048 1 + T G SKCM 201828049 + 201828029 201828069 41 GCCATCATCACTGACAGTGTGAAAAATGGCAGGATTCATTT GCCATCATCACTGACAGTGGGAAAAATGGCAGGATTCATTT < 41bp 0.757566761211928 0.509461579639381 NA NA prediction 0.496210363145095 Functional Loss - IPO9 ENSG00000198700 CDS Human protein_coding chr1:201828049 chr1:201828048 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8873 0 0 1 0 2 IPO9 chr1:201827983 3'AG 201827983 Downstream 66bp 8459 chr1 201828048 201828048 1 + T G SKCM 201828049 + 201828029 201828069 41 GCCATCATCACTGACAGTGTGAAAAATGGCAGGATTCATTT GCCATCATCACTGACAGTGGGAAAAATGGCAGGATTCATTT < 41bp 0.757566761211928 0.509461579639381 NA NA prediction 0.496210363145095 Functional Loss - IPO9 ENSG00000198700 CDS Human protein_coding chr1:201828049 chr1:201828048 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8873 0 0 1 0 2 IPO9 chr1:201828122 5'GT 201828122 Upstream 75bp 8460 chr12 57995311 57995311 1 + T G rs143979993 57995312 + 57995292 57995332 41 CGTATCTCCTCTCACAGGCTGGGGCAGAGATCTCTACTGTC CGTATCTCCTCTCACAGGCGGGGGCAGAGATCTCTACTGTC < 41bp 0.854904856004351 0.606807558382498 NA NA prediction 0.496194595243705 Functional Loss - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57995312 chr12:57995311 synonymous SNV . 0 20 hm7G_associated_SNPs_8874 0 0 1 0 1 PIP4K2C chr12:57995309 3'AG 57995309 Downstream 3bp 8461 chr17 78196524 78196524 1 + T G KIRC 78196525 + 78196505 78196545 41 ACCTCCCGGGATGTGACTCTGGGCCCCACCGCCATTATGTC ACCTCCCGGGATGTGACTCGGGGCCCCACCGCCATTATGTC < 41bp 0.748042754193815 0.399966921949296 NA NA prediction 0.496085508387631 Functional Loss - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78196525 chr17:78196524 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_8875 0 0 1 0 1 SLC26A11 chr17:78196454 3'AG 78196454 Downstream 71bp 8462 chr18 44013210 44013210 1 + T G rs563079733 44013211 + 44013191 44013231 41 TCCTGCCGCCACTTCCACCTGGGCCCCCCGCAGCCGCAGCA TCCTGCCGCCACTTCCACCGGGGCCCCCCGCAGCCGCAGCA < 41bp 0.747954289070714 0.472777826470535 NA NA prediction 0.495908578141428 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44013211 chr18:44013210 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8876 0 0 0 0 1 RNF165 chr18:44013153 3'AG 44013153 Downstream 58bp 8463 chr13 50055124 50055124 1 + T G UCEC 50055125 + 50055105 50055145 41 TGCAAATGTAATCGACAATTGTGTCAAAACCGAGTTGTCCA TGCAAATGTAATCGACAATGGTGTCAAAACCGAGTTGTCCA < 41bp 0.747923354791775 0.429752192495995 NA NA prediction 0.49584670958355 Functional Loss - SETDB2;SETDB2-PHF11 ENSG00000136169 CDS Human protein_coding chr13:50055125 chr13:50055124 nonsynonymous SNV 0.736 2 20 hm7G_associated_SNPs_8877 0 0 0 0 1 SETDB2;SETDB2-PHF11 chr13:50055083 3'AG 50055083 Downstream 42bp 8464 chr12 133732170 133732170 1 + T G UCEC 133732171 + 133732151 133732191 41 CAATCCTGTGACATTAAAATGGAAGGAATGGCAAGGAATGA CAATCCTGTGACATTAAAAGGGAAGGAATGGCAAGGAATGA < 41bp 0.842156939820779 0.594323763582844 NA NA prediction 0.495666352475871 Functional Loss - ZNF10 ENSG00000090612;ENSG00000256223;ENSG00000256825 CDS Human other chr12:133732171 chr12:133732170 nonsynonymous SNV 0.975 0 20 hm7G_associated_SNPs_8880 0 0 0 0 1 ZNF10 chr12:133732089 3'AG 133732089 Downstream 82bp 8465 chr1 214510115 214510115 1 + T G rs11120301 214510116 + 214510096 214510136 41 CTGAGATCAAACAGGAAATTGAAAGCCACTGAAACTATGCA CTGAGATCAAACAGGAAATGGAAAGCCACTGAAACTATGCA < 41bp 0.807879820916476 0.560196448216372 NA NA prediction 0.495366745400209 Functional Loss - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214510116 chr1:214510115 nonsynonymous SNV 0.960 0 20 hm7G_associated_SNPs_8883 0 0 1 0 1 SMYD2 chr1:214510047 3'AG 214510047 Downstream 69bp 8466 chr1 162724476 162724476 1 + T G COAD 162724477 + 162724457 162724497 41 CCAGTGGAACCTGATGACCTGAAGGAGTTTCTGCAGATTGA CCAGTGGAACCTGATGACCGGAAGGAGTTTCTGCAGATTGA < 41bp 0.87603054230951 0.62835922183223 NA NA prediction 0.495342640954561 Functional Loss - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162724477 chr1:162724476 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8884 0 0 0 0 1 DDR2 chr1:162724414 3'AG 162724414 Downstream 63bp 8467 chr7 130138278 130138278 1 + T G rs527278287 130138279 + 130138259 130138299 41 GGTACAAGCAGAATCGATCTGGTCGGCTTACCATAAAGAGT GGTACAAGCAGAATCGATCGGGTCGGCTTACCATAAAGAGT < 41bp 0.877086734690174 0.629419610745867 NA NA prediction 0.495334247888616 Functional Loss - MEST ENSG00000106484 CDS Human protein_coding chr7:130138279 chr7:130138278 synonymous SNV . 0 20 hm7G_associated_SNPs_8885 0 0 0 0 2 MEST chr7:130138260 3'AG 130138260 Downstream 19bp 8468 chr7 130138278 130138278 1 + T G rs527278287 130138279 + 130138259 130138299 41 GGTACAAGCAGAATCGATCTGGTCGGCTTACCATAAAGAGT GGTACAAGCAGAATCGATCGGGTCGGCTTACCATAAAGAGT < 41bp 0.877086734690174 0.629419610745867 NA NA prediction 0.495334247888616 Functional Loss - MEST ENSG00000106484 CDS Human protein_coding chr7:130138279 chr7:130138278 synonymous SNV . 0 20 hm7G_associated_SNPs_8885 0 0 0 0 2 MEST chr7:130138318 5'GT 130138318 Upstream 41bp 8469 chr3 24003534 24003534 1 + T G KIRP 24003535 + 24003515 24003555 41 ATTGAAATGCAAAGTGCAATGAAGACCATGATGAACAGCCA ATTGAAATGCAAAGTGCAAGGAAGACCATGATGAACAGCCA < 41bp 0.853620278410368 0.605964446025998 NA NA prediction 0.49531166476874 Functional Loss - NR1D2 ENSG00000174738 CDS Human protein_coding chr3:24003535 chr3:24003534 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_8886 0 0 1 6 1 NR1D2 chr3:24003468 3'AG 24003468 Downstream 67bp 8470 chr5 85915218 85915218 1 + T G UCEC 85915219 + 85915199 85915239 41 GTCGTTACTAGCTAAGATGTGTTTGTACTTTGGATCTGCAT GTCGTTACTAGCTAAGATGGGTTTGTACTTTGGATCTGCAT < 41bp 0.853953336122931 0.606349934669688 NA NA prediction 0.495206802906487 Functional Loss - COX7C ENSG00000127184 CDS Human protein_coding chr5:85915219 chr5:85915218 nonsynonymous SNV 0.468 1 20 hm7G_associated_SNPs_8888 0 0 1 0 2 COX7C chr5:85915170 3'AG 85915170 Downstream 49bp 8471 chr5 85915218 85915218 1 + T G UCEC 85915219 + 85915199 85915239 41 GTCGTTACTAGCTAAGATGTGTTTGTACTTTGGATCTGCAT GTCGTTACTAGCTAAGATGGGTTTGTACTTTGGATCTGCAT < 41bp 0.853953336122931 0.606349934669688 NA NA prediction 0.495206802906487 Functional Loss - COX7C ENSG00000127184 CDS Human protein_coding chr5:85915219 chr5:85915218 nonsynonymous SNV 0.468 1 20 hm7G_associated_SNPs_8888 0 0 1 0 2 COX7C chr5:85915313 5'GT 85915313 Upstream 96bp 8472 chr11 129999082 129999082 1 + T G TGCT 129999083 + 129999063 129999103 41 GAGAACTACCTGGCTGCCTTGCAGTCTGACCCGCCACGGGT GAGAACTACCTGGCTGCCTGGCAGTCTGACCCGCCACGGGT < 41bp 0.747525715318912 0.408430009987577 NA NA prediction 0.495051430637824 Functional Loss - APLP2 ENSG00000084234 CDS Human protein_coding chr11:129999083 chr11:129999082 nonsynonymous SNV 0.936 4 20 hm7G_associated_SNPs_8890 0 0 1 0 1 APLP2 chr11:129999101 5'GT 129999101 Upstream 20bp 8473 chr8 94821290 94821290 1 + T G LUSC 94821291 + 94821271 94821311 41 CTTTTTTACATTAGAAAAATGGTCCTGCTAGACTACTGAGT CTTTTTTACATTAGAAAAAGGGTCCTGCTAGACTACTGAGT < 41bp 0.855386539337185 0.608176717148075 NA NA prediction 0.494419644378221 Functional Loss - TMEM67 ENSG00000164953 CDS Human protein_coding chr8:94821291 chr8:94821290 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8892 0 0 0 0 2 TMEM67 chr8:94821285 3'AG 94821285 Downstream 6bp 8474 chr8 94821290 94821290 1 + T G LUSC 94821291 + 94821271 94821311 41 CTTTTTTACATTAGAAAAATGGTCCTGCTAGACTACTGAGT CTTTTTTACATTAGAAAAAGGGTCCTGCTAGACTACTGAGT < 41bp 0.855386539337185 0.608176717148075 NA NA prediction 0.494419644378221 Functional Loss - TMEM67 ENSG00000164953 CDS Human protein_coding chr8:94821291 chr8:94821290 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_8892 0 0 0 0 2 TMEM67 chr8:94821389 5'GT 94821389 Upstream 100bp 8475 chr14 103804671 103804671 1 + T G BLCA 103804672 + 103804652 103804692 41 TTTTTTCTGTAGAGAATAGTGACAGTGGTACAGGAAAGAAA TTTTTTCTGTAGAGAATAGGGACAGTGGTACAGGAAAGAAA < 41bp 0.860516685223174 0.613343165512609 NA NA prediction 0.49434703942113 Functional Loss - EIF5 ENSG00000100664 CDS Human protein_coding chr14:103804672 chr14:103804671 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8894 0 0 1 0 1 EIF5 chr14:103804664 3'AG 103804664 Downstream 8bp 8476 chr1 40724014 40724014 1 + T G SKCM 40724015 + 40723995 40724035 41 CGTATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTA CGTATCTTCGGGGCCGTGCGGCTCTTTTCCTGGACAGTGTA < 41bp 0.854975627414867 0.607992760093071 NA NA prediction 0.493965734643593 Functional Loss - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40724015 chr1:40724014 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8900 0 0 1 0 1 ZMPSTE24 chr1:40724066 5'GT 40724066 Upstream 53bp 8477 chr3 17131310 17131310 1 + T G LUAD 17131311 + 17131291 17131331 41 GCTGCTGTTTCATGTGGACTGAATAAACCAGGCACCGAAAA GCTGCTGTTTCATGTGGACGGAATAAACCAGGCACCGAAAA < 41bp 0.842180397966582 0.595199172207329 NA NA prediction 0.493962451518506 Functional Loss - PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17131311 chr3:17131310 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_8901 0 0 0 0 1 PLCL2 chr3:17131225 3'AG 17131225 Downstream 86bp 8478 chr19 36271838 36271838 1 + T G UCEC 36271839 + 36271819 36271859 41 CAGCTGTGCCACGGCCTCGTGGGAAGCTGGCCGGCCTGCTC CAGCTGTGCCACGGCCTCGGGGGAAGCTGGCCGGCCTGCTC < 41bp 0.746965073576589 0.393980719311026 NA NA prediction 0.493930147153177 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36271839 chr19:36271838 synonymous SNV . 0 20 hm7G_associated_SNPs_8902 0 0 1 0 1 ARHGAP33 chr19:36271822 3'AG 36271822 Downstream 17bp 8479 chr1 25629818 25629818 1 + T G rs141833592 25629819 + 25629799 25629839 41 CTATTTCTTTGCAGACTTATGTGCACAGTGCGGTGTTGGCA CTATTTCTTTGCAGACTTAGGTGCACAGTGCGGTGTTGGCA < 41bp 0.86562218766257 0.618770026210449 NA NA prediction 0.493704322904242 Functional Loss - RHD ENSG00000187010 CDS Human protein_coding chr1:25629819 chr1:25629818 stopgain 0.023 0 20 hm7G_associated_SNPs_8903 0 0 0 0 1 RHD chr1:25629813 3'AG 25629813 Downstream 6bp 8480 chr16 335112 335112 1 + T G CESC 335113 + 335093 335133 41 GGGCGGGCAGACTTCCCCGTGGACGAGGAGCTTGGCCTGGA GGGCGGGCAGACTTCCCCGGGGACGAGGAGCTTGGCCTGGA < 41bp 0.891340978313871 0.644558197293789 NA NA prediction 0.493565562040162 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335113 chr16:335112 nonsynonymous SNV 0.891 0 20 hm7G_associated_SNPs_8904 0 0 1 0 2 PDIA2 chr16:335084 3'AG 335084 Downstream 29bp 8481 chr16 335112 335112 1 + T G CESC 335113 + 335093 335133 41 GGGCGGGCAGACTTCCCCGTGGACGAGGAGCTTGGCCTGGA GGGCGGGCAGACTTCCCCGGGGACGAGGAGCTTGGCCTGGA < 41bp 0.891340978313871 0.644558197293789 NA NA prediction 0.493565562040162 Functional Loss - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335113 chr16:335112 nonsynonymous SNV 0.891 0 20 hm7G_associated_SNPs_8904 0 0 1 0 2 PDIA2 chr16:335200 5'GT 335200 Upstream 89bp 8482 chrX 128709978 128709978 1 + T G UCEC 128709979 + 128709959 128709999 41 CTTTCATCCCTAAACTTAATGACAGCCAGTACTGCAAGCCA CTTTCATCCCTAAACTTAAGGACAGCCAGTACTGCAAGCCA < 41bp 0.746765462139803 0.413800676012767 NA NA prediction 0.493530924279606 Functional Loss - OCRL ENSG00000122126 CDS Human protein_coding chrX:128709979 chrX:128709978 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_8905 0 0 1 0 1 OCRL chrX:128710039 5'GT 128710039 Upstream 62bp 8483 chr17 71239078 71239078 1 + T G SKCM 71239079 + 71239059 71239099 41 TAAGGAAGAGTGGATTCGGTGGCATCACGATGCTCTTCACA TAAGGAAGAGTGGATTCGGGGGCATCACGATGCTCTTCACA < 41bp 0.746730766790236 0.407671945402385 NA NA prediction 0.493461533580472 Functional Loss - C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239079 chr17:71239078 synonymous SNV . 0 20 hm7G_associated_SNPs_8908 0 0 1 0 2 C17orf80 chr17:71239035 3'AG 71239035 Downstream 44bp 8484 chr17 71239078 71239078 1 + T G SKCM 71239079 + 71239059 71239099 41 TAAGGAAGAGTGGATTCGGTGGCATCACGATGCTCTTCACA TAAGGAAGAGTGGATTCGGGGGCATCACGATGCTCTTCACA < 41bp 0.746730766790236 0.407671945402385 NA NA prediction 0.493461533580472 Functional Loss - C17orf80 ENSG00000141219 CDS Human protein_coding chr17:71239079 chr17:71239078 synonymous SNV . 0 20 hm7G_associated_SNPs_8908 0 0 1 0 2 C17orf80 chr17:71239142 5'GT 71239142 Upstream 65bp 8485 chr19 50926944 50926944 1 + T G PRAD 50926945 + 50926925 50926965 41 CCGTTGGACAGCCCTGCCCTGGAGGTCTCGGACAGCGAGTC CCGTTGGACAGCCCTGCCCGGGAGGTCTCGGACAGCGAGTC < 41bp 0.894481935517405 0.647751971420176 NA NA prediction 0.493459928194459 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926945 chr19:50926944 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_8909 0 0 0 0 3 SPIB chr19:50926862 3'AG 50926862 Downstream 83bp 8486 chr19 50926944 50926944 1 + T G PRAD 50926945 + 50926925 50926965 41 CCGTTGGACAGCCCTGCCCTGGAGGTCTCGGACAGCGAGTC CCGTTGGACAGCCCTGCCCGGGAGGTCTCGGACAGCGAGTC < 41bp 0.894481935517405 0.647751971420176 NA NA prediction 0.493459928194459 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926945 chr19:50926944 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_8909 0 0 0 0 3 SPIB chr19:50926897 3'AG 50926897 Downstream 48bp 8487 chr19 50926944 50926944 1 + T G PRAD 50926945 + 50926925 50926965 41 CCGTTGGACAGCCCTGCCCTGGAGGTCTCGGACAGCGAGTC CCGTTGGACAGCCCTGCCCGGGAGGTCTCGGACAGCGAGTC < 41bp 0.894481935517405 0.647751971420176 NA NA prediction 0.493459928194459 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926945 chr19:50926944 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_8909 0 0 0 0 3 SPIB chr19:50927012 5'GT 50927012 Upstream 69bp 8488 chr19 53013843 53013843 1 + T G HNSC 53013844 + 53013824 53013864 41 GATATCTCTTCCAAACGCATGATGAAGGAGGTCTTGTCAAC GATATCTCTTCCAAACGCAGGATGAAGGAGGTCTTGTCAAC < 41bp 0.746680669197221 0.441625064668308 NA NA prediction 0.493361338394442 Functional Loss - ZNF578 ENSG00000258405 CDS Human protein_coding chr19:53013844 chr19:53013843 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_8911 0 0 0 0 1 ZNF578 chr19:53013825 3'AG 53013825 Downstream 19bp 8489 chr5 131977957 131977957 1 + T G CESC 131977958 + 131977938 131977978 41 TGGAGCTTTTAGGACGTTCTGAATATGTGGAGAAATTCTAC TGGAGCTTTTAGGACGTTCGGAATATGTGGAGAAATTCTAC < 41bp 0.838006401406936 0.591352439184649 NA NA prediction 0.493307924444576 Functional Loss - RAD50 ENSG00000113522 CDS Human protein_coding chr5:131977958 chr5:131977957 synonymous SNV . 0 20 hm7G_associated_SNPs_8912 0 0 1 0 1 RAD50 chr5:131977870 3'AG 131977870 Downstream 88bp 8490 chr7 44096439 44096439 1 + T G rs149657924 44096440 + 44096420 44096460 41 AGGTGGCCAAGGCTTCAGGTGCCAACTACAGCTTTCACAAG AGGTGGCCAAGGCTTCAGGGGCCAACTACAGCTTTCACAAG < 41bp 0.746642186663829 0.400643339146949 NA NA prediction 0.493284373327659 Functional Loss - DBNL ENSG00000136279 CDS Human protein_coding chr7:44096440 chr7:44096439 synonymous SNV . 0 20 hm7G_associated_SNPs_8913 0 0 1 0 2 DBNL chr7:44096356 3'AG 44096356 Downstream 84bp 8491 chr7 44096439 44096439 1 + T G rs149657924 44096440 + 44096420 44096460 41 AGGTGGCCAAGGCTTCAGGTGCCAACTACAGCTTTCACAAG AGGTGGCCAAGGCTTCAGGGGCCAACTACAGCTTTCACAAG < 41bp 0.746642186663829 0.400643339146949 NA NA prediction 0.493284373327659 Functional Loss - DBNL ENSG00000136279 CDS Human protein_coding chr7:44096440 chr7:44096439 synonymous SNV . 0 20 hm7G_associated_SNPs_8913 0 0 1 0 2 DBNL chr7:44096502 5'GT 44096502 Upstream 64bp 8492 chr6 80744811 80744811 1 + T G LUAD 80744812 + 80744792 80744832 41 CGGAACGAAATAGCTTATTTGAATAAACTACAACAACACAG CGGAACGAAATAGCTTATTGGAATAAACTACAACAACACAG < 41bp 0.746621806554579 0.435519732878108 NA NA prediction 0.493243613109158 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80744812 chr6:80744811 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8915 0 0 1 0 1 TTK chr6:80744859 5'GT 80744859 Upstream 49bp 8493 chr9 117050993 117050993 1 + T G SKCM 117050994 + 117050974 117051014 41 TCATTCAGGGCCCTGTGGGTGATCGAGGAGACCGCGGGGAA TCATTCAGGGCCCTGTGGGGGATCGAGGAGACCGCGGGGAA < 41bp 0.874448308666541 0.627833673031307 NA NA prediction 0.493229271270469 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117050994 chr9:117050993 synonymous SNV . 0 20 hm7G_associated_SNPs_8916 0 0 1 0 2 COL27A1 chr9:117050982 3'AG 117050982 Downstream 12bp 8494 chr9 117050993 117050993 1 + T G SKCM 117050994 + 117050974 117051014 41 TCATTCAGGGCCCTGTGGGTGATCGAGGAGACCGCGGGGAA TCATTCAGGGCCCTGTGGGGGATCGAGGAGACCGCGGGGAA < 41bp 0.874448308666541 0.627833673031307 NA NA prediction 0.493229271270469 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117050994 chr9:117050993 synonymous SNV . 0 20 hm7G_associated_SNPs_8916 0 0 1 0 2 COL27A1 chr9:117051035 5'GT 117051035 Upstream 43bp 8495 chr15 22851079 22851079 1 + T G PRAD 22851080 + 22851060 22851100 41 ACAAGGCCATTCTTGAATATGACAATGTTGGAGAAGCCTCT ACAAGGCCATTCTTGAATAGGACAATGTTGGAGAAGCCTCT < 41bp 0.801723307162766 0.555338888987243 NA NA prediction 0.492768836351046 Functional Loss - TUBGCP5 ENSG00000153575 CDS Human other chr15:22851080 chr15:22851079 stopgain . 0 20 hm7G_associated_SNPs_8920 0 0 0 0 1 TUBGCP5 chr15:22851109 5'GT 22851109 Upstream 31bp 8496 chr22 42293112 42293112 1 + T G rs145703964 42293113 + 42293093 42293133 41 CATTCTTTTGTGGACTCTGTGGGGGTTATGAGCCCCCCACT CATTCTTTTGTGGACTCTGGGGGGGTTATGAGCCCCCCACT < 41bp 0.746306526921626 0.407213615862952 NA NA prediction 0.492613053843253 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42293113 chr22:42293112 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_8921 0 0 1 0 2 SREBF2 chr22:42293056 3'AG 42293056 Downstream 57bp 8497 chr22 42293112 42293112 1 + T G rs145703964 42293113 + 42293093 42293133 41 CATTCTTTTGTGGACTCTGTGGGGGTTATGAGCCCCCCACT CATTCTTTTGTGGACTCTGGGGGGGTTATGAGCCCCCCACT < 41bp 0.746306526921626 0.407213615862952 NA NA prediction 0.492613053843253 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42293113 chr22:42293112 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_8921 0 0 1 0 2 SREBF2 chr22:42293165 5'GT 42293165 Upstream 54bp 8498 chr16 70497655 70497655 1 + T G BLCA 70497656 + 70497636 70497676 41 CTGGTGGCTGCTGAACACCTGAGTGCCCGGGCAGGCTTCAC CTGGTGGCTGCTGAACACCGGAGTGCCCGGGCAGGCTTCAC < 41bp 0.746136003965361 0.40165204008706 NA NA prediction 0.492272007930721 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70497656 chr16:70497655 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8924 0 0 1 0 1 FUK chr16:70497677 5'GT 70497677 Upstream 23bp 8499 chr17 44803926 44803926 1 + T G MESO 44803927 + 44803907 44803947 41 TCTTTCAGATCTTTGATGATGCGTACAAATCCCAGCTCAGT TCTTTCAGATCTTTGATGAGGCGTACAAATCCCAGCTCAGT < 41bp 0.746094980153832 0.43244749182078 NA NA prediction 0.492189960307665 Functional Loss - NSF ENSG00000073969 CDS Human protein_coding chr17:44803927 chr17:44803926 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_8926 0 0 0 0 2 NSF chr17:44803915 3'AG 44803915 Downstream 12bp 8500 chr17 44803926 44803926 1 + T G MESO 44803927 + 44803907 44803947 41 TCTTTCAGATCTTTGATGATGCGTACAAATCCCAGCTCAGT TCTTTCAGATCTTTGATGAGGCGTACAAATCCCAGCTCAGT < 41bp 0.746094980153832 0.43244749182078 NA NA prediction 0.492189960307665 Functional Loss - NSF ENSG00000073969 CDS Human protein_coding chr17:44803927 chr17:44803926 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_8926 0 0 0 0 2 NSF chr17:44803981 5'GT 44803981 Upstream 56bp 8501 chr15 91433097 91433097 1 + T G UVM 91433098 + 91433078 91433118 41 CAGTGACAGATGAGCTGGCTGTGGCCACCGAGATGGTGTTC CAGTGACAGATGAGCTGGCGGTGGCCACCGAGATGGTGTTC < 41bp 0.745991798115992 0.404584386153067 NA NA prediction 0.491983596231984 Functional Loss - FES ENSG00000182511 CDS Human protein_coding chr15:91433098 chr15:91433097 synonymous SNV . 0 20 hm7G_associated_SNPs_8928 0 0 1 0 2 FES chr15:91433070 3'AG 91433070 Downstream 28bp 8502 chr15 91433097 91433097 1 + T G UVM 91433098 + 91433078 91433118 41 CAGTGACAGATGAGCTGGCTGTGGCCACCGAGATGGTGTTC CAGTGACAGATGAGCTGGCGGTGGCCACCGAGATGGTGTTC < 41bp 0.745991798115992 0.404584386153067 NA NA prediction 0.491983596231984 Functional Loss - FES ENSG00000182511 CDS Human protein_coding chr15:91433098 chr15:91433097 synonymous SNV . 0 20 hm7G_associated_SNPs_8928 0 0 1 0 2 FES chr15:91433192 5'GT 91433192 Upstream 96bp 8503 chr8 66992654 66992654 1 + T G LUSC 66992655 + 66992635 66992675 41 CTTGACGGGCTGCTACTTTTGCTGCTGCCTGTGCTGCTGCT CTTGACGGGCTGCTACTTTGGCTGCTGCCTGTGCTGCTGCT < 41bp 0.88019216198079 0.634244340668959 NA NA prediction 0.491895642623662 Functional Loss - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66992655 chr8:66992654 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_8929 0 0 0 8 1 DNAJC5B chr8:66992612 3'AG 66992612 Downstream 43bp 8504 chr22 29179621 29179621 1 + T G COAD 29179622 + 29179602 29179642 41 GAAGTTTTTACAAAGAAAATGATTGAGTCTATGTAAGTTTT GAAGTTTTTACAAAGAAAAGGATTGAGTCTATGTAAGTTTT < 41bp 0.843978030185884 0.598053977955751 NA NA prediction 0.491848104460267 Functional Loss - CCDC117 ENSG00000159873 CDS Human protein_coding chr22:29179622 chr22:29179621 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_8930 0 0 1 0 1 CCDC117 chr22:29179633 5'GT 29179633 Upstream 13bp 8505 chr17 7478566 7478566 1 + T G STAD 7478567 + 7478547 7478587 41 CTAGCACCCACTCGAGAATTGGCTCAGCAGGTAAGAGTGGC CTAGCACCCACTCGAGAATGGGCTCAGCAGGTAAGAGTGGC < 41bp 0.889226199509146 0.64339742237887 NA NA prediction 0.491657554260552 Functional Loss - EIF4A1 ENSG00000161960 CDS Human protein_coding chr17:7478567 chr17:7478566 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_8931 0 0 1 0 1 EIF4A1 chr17:7478576 5'GT 7478576 Upstream 11bp 8506 chr2 109365524 109365524 1 + T G LUAD 109365525 + 109365505 109365545 41 CATCTTTTCTTGGTAGCGATGATATTGGAAACATTGATGTA CATCTTTTCTTGGTAGCGAGGATATTGGAAACATTGATGTA < 41bp 0.74576233649653 0.431736342256513 NA NA prediction 0.49152467299306 Functional Loss - RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109365525 chr2:109365524 nonsynonymous SNV 0.971 3 20 hm7G_associated_SNPs_8933 0 0 1 0 1 RANBP2 chr2:109365585 5'GT 109365585 Upstream 62bp 8507 chr17 58235145 58235145 1 + T G HNSC 58235146 + 58235126 58235166 41 GCGGTGCTGGCCTTTCTGGTGGAGGTGGGACTCCCATCCCC GCGGTGCTGGCCTTTCTGGGGGAGGTGGGACTCCCATCCCC < 41bp 0.74569415001312 0.404032847075881 NA NA prediction 0.49138830002624 Functional Loss - CA4 ENSG00000167434 CDS Human protein_coding chr17:58235146 chr17:58235145 nonsynonymous SNV 0.290 3 20 hm7G_associated_SNPs_8934 0 0 0 0 2 CA4 chr17:58235051 3'AG 58235051 Downstream 95bp 8508 chr17 58235145 58235145 1 + T G HNSC 58235146 + 58235126 58235166 41 GCGGTGCTGGCCTTTCTGGTGGAGGTGGGACTCCCATCCCC GCGGTGCTGGCCTTTCTGGGGGAGGTGGGACTCCCATCCCC < 41bp 0.74569415001312 0.404032847075881 NA NA prediction 0.49138830002624 Functional Loss - CA4 ENSG00000167434 CDS Human protein_coding chr17:58235146 chr17:58235145 nonsynonymous SNV 0.290 3 20 hm7G_associated_SNPs_8934 0 0 0 0 2 CA4 chr17:58235149 5'GT 58235149 Upstream 5bp 8509 chr16 57719755 57719755 1 + T G SKCM 57719756 + 57719736 57719776 41 CTGGGCCTCTCGAGCCTGGTGGGTGTGACATGGGGGTTGGC CTGGGCCTCTCGAGCCTGGGGGGTGTGACATGGGGGTTGGC < 41bp 0.889176027618031 0.643486019918117 NA NA prediction 0.491380015399829 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57719756 chr16:57719755 nonsynonymous SNV 0.972 1 20 hm7G_associated_SNPs_8935 0 0 0 0 1 ADGRG3 chr16:57719838 5'GT 57719838 Upstream 84bp 8510 chr19 10787982 10787982 1 + T G COAD 10787983 + 10787963 10788003 41 AAATGGAGAAAGTATTAGCTGGAGGTAGGGAGGCCGAGACA AAATGGAGAAAGTATTAGCGGGAGGTAGGGAGGCCGAGACA < 41bp 0.871519243106862 0.625953373047868 NA NA prediction 0.491131740117987 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10787983 chr19:10787982 synonymous SNV . 0 20 hm7G_associated_SNPs_8936 0 0 1 0 1 ILF3 chr19:10787986 5'GT 10787986 Upstream 5bp 8511 chr4 57852539 57852539 1 + T G UCEC 57852540 + 57852520 57852560 41 ATATGCAATATGATGAGGATGATGATGAAATCACCCCGGAT ATATGCAATATGATGAGGAGGATGATGAAATCACCCCGGAT < 41bp 0.864358501233209 0.619124773507484 NA NA prediction 0.490467455451449 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57852540 chr4:57852539 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_8938 0 0 1 0 2 POLR2B chr4:57852520 3'AG 57852520 Downstream 20bp 8512 chr4 57852539 57852539 1 + T G UCEC 57852540 + 57852520 57852560 41 ATATGCAATATGATGAGGATGATGATGAAATCACCCCGGAT ATATGCAATATGATGAGGAGGATGATGAAATCACCCCGGAT < 41bp 0.864358501233209 0.619124773507484 NA NA prediction 0.490467455451449 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57852540 chr4:57852539 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_8938 0 0 1 0 2 POLR2B chr4:57852592 5'GT 57852592 Upstream 54bp 8513 chr5 145638024 145638024 1 + T G SKCM 145638025 + 145638005 145638045 41 CCAACAGCTGCTAACATTGTGATCCAGACTGAACCACCAGT CCAACAGCTGCTAACATTGGGATCCAGACTGAACCACCAGT < 41bp 0.745152830797656 0.430203904915799 NA NA prediction 0.490305661595311 Functional Loss - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145638025 chr5:145638024 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_8940 0 0 1 0 1 RBM27 chr5:145638012 3'AG 145638012 Downstream 13bp 8514 chr9 123924354 123924354 1 + T G rs140833605 123924355 + 123924335 123924375 41 AAACTGGAGTTAGAGAATTTGCAGCAGATATCCCAGCAGCA AAACTGGAGTTAGAGAATTGGCAGCAGATATCCCAGCAGCA < 41bp 0.74508508973401 0.423204397124382 NA NA prediction 0.49017017946802 Functional Loss - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123924355 chr9:123924354 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_8942 0 0 1 0 1 CNTRL chr9:123924332 3'AG 123924332 Downstream 23bp 8515 chr15 56704567 56704567 1 + T G rs138888960 56704568 + 56704548 56704588 41 AGTGCCACAGAGGTTCGCTTGAATAGAGCTCTAGAAGAAGC AGTGCCACAGAGGTTCGCTGGAATAGAGCTCTAGAAGAAGC < 41bp 0.745074428214247 0.43704767726993 NA NA prediction 0.490148856428494 Functional Loss - TEX9 ENSG00000151575 CDS Human protein_coding chr15:56704568 chr15:56704567 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_8943 0 0 1 0 2 TEX9 chr15:56704500 3'AG 56704500 Downstream 68bp 8516 chr15 56704567 56704567 1 + T G rs138888960 56704568 + 56704548 56704588 41 AGTGCCACAGAGGTTCGCTTGAATAGAGCTCTAGAAGAAGC AGTGCCACAGAGGTTCGCTGGAATAGAGCTCTAGAAGAAGC < 41bp 0.745074428214247 0.43704767726993 NA NA prediction 0.490148856428494 Functional Loss - TEX9 ENSG00000151575 CDS Human protein_coding chr15:56704568 chr15:56704567 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_8943 0 0 1 0 2 TEX9 chr15:56704634 5'GT 56704634 Upstream 68bp 8517 chr10 135373612 135373612 1 - A C BRCA 135373611 - 135373591 135373631 41 GAAGACTTGATGGAAATGGTGCAAAAGCTGCAGAAAGGTCG GAAGACTTGATGGAAATGGGGCAAAAGCTGCAGAAAGGTCG < 41bp 0.865520398307777 0.620582261717039 NA NA prediction 0.489876273181475 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135373611 chr10:135373612 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8946 0 0 0 0 2 SYCE1 chr10:135373595 5'GT 135373595 Upstream 18bp 8518 chr10 135373612 135373612 1 - A C BRCA 135373611 - 135373591 135373631 41 GAAGACTTGATGGAAATGGTGCAAAAGCTGCAGAAAGGTCG GAAGACTTGATGGAAATGGGGCAAAAGCTGCAGAAAGGTCG < 41bp 0.865520398307777 0.620582261717039 NA NA prediction 0.489876273181475 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135373611 chr10:135373612 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8946 0 0 0 0 2 SYCE1 chr10:135373657 3'AG 135373657 Downstream 46bp 8519 chr19 13936517 13936517 1 + T G BRCA 13936518 + 13936498 13936538 41 CTGGGCATCGCACTGGAGCTGGGGCTGCAGGTGAGGGCTGC CTGGGCATCGCACTGGAGCGGGGGCTGCAGGTGAGGGCTGC < 41bp 0.884190841634723 0.639366837530447 NA NA prediction 0.489648008208551 Functional Loss - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13936518 chr19:13936517 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_8947 0 0 0 0 1 ZSWIM4 chr19:13936527 5'GT 13936527 Upstream 11bp 8520 chr16 28914464 28914464 1 + T G THYM 28914465 + 28914445 28914485 41 ATCCTCTATGTTGACCCCCTGCCGGTGAGGTTTCTTCCGCC ATCCTCTATGTTGACCCCCGGCCGGTGAGGTTTCTTCCGCC < 41bp 0.744813203146215 0.418637715490689 NA NA prediction 0.489626406292429 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28914465 chr16:28914464 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_8948 0 0 1 0 1 ATP2A1 chr16:28914468 5'GT 28914468 Upstream 5bp 8521 chr1 45478860 45478860 1 + T G SKCM 45478861 + 45478841 45478881 41 TCAGCACGTGTCGCTCTCCTGAGGCCTGCTGTGAACTGACT TCAGCACGTGTCGCTCTCCGGAGGCCTGCTGTGAACTGACT < 41bp 0.744808699522206 0.409951873474615 NA NA prediction 0.489617399044413 Functional Loss - UROD ENSG00000126088 CDS Human protein_coding chr1:45478861 chr1:45478860 synonymous SNV . 0 20 hm7G_associated_SNPs_8949 0 0 1 0 1 UROD chr1:45478887 5'GT 45478887 Upstream 28bp 8522 chr7 100485720 100485720 1 + T G UCEC 100485721 + 100485701 100485741 41 CACCAGACTCCCCAGGGCCTGATGCCCTATGGTCAGCCCCG CACCAGACTCCCCAGGGCCGGATGCCCTATGGTCAGCCCCG < 41bp 0.885785896955838 0.641034924880536 NA NA prediction 0.489501944150603 Functional Loss - SRRT ENSG00000087087 CDS Human protein_coding chr7:100485721 chr7:100485720 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_8950 0 0 1 0 2 SRRT chr7:100485675 3'AG 100485675 Downstream 46bp 8523 chr7 100485720 100485720 1 + T G UCEC 100485721 + 100485701 100485741 41 CACCAGACTCCCCAGGGCCTGATGCCCTATGGTCAGCCCCG CACCAGACTCCCCAGGGCCGGATGCCCTATGGTCAGCCCCG < 41bp 0.885785896955838 0.641034924880536 NA NA prediction 0.489501944150603 Functional Loss - SRRT ENSG00000087087 CDS Human protein_coding chr7:100485721 chr7:100485720 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_8950 0 0 1 0 2 SRRT chr7:100485764 5'GT 100485764 Upstream 45bp 8524 chr15 91419714 91419714 1 + T G BRCA 91419715 + 91419695 91419735 41 CAGTGGCTGGAACAGCAGGTGGCAAAGCGACGGACTAAACG CAGTGGCTGGAACAGCAGGGGGCAAAGCGACGGACTAAACG < 41bp 0.890514464054103 0.645859282075431 NA NA prediction 0.489310363957344 Functional Loss - FURIN ENSG00000140564 CDS Human protein_coding chr15:91419715 chr15:91419714 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8953 0 0 1 0 2 FURIN chr15:91419692 3'AG 91419692 Downstream 23bp 8525 chr15 91419714 91419714 1 + T G BRCA 91419715 + 91419695 91419735 41 CAGTGGCTGGAACAGCAGGTGGCAAAGCGACGGACTAAACG CAGTGGCTGGAACAGCAGGGGGCAAAGCGACGGACTAAACG < 41bp 0.890514464054103 0.645859282075431 NA NA prediction 0.489310363957344 Functional Loss - FURIN ENSG00000140564 CDS Human protein_coding chr15:91419715 chr15:91419714 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_8953 0 0 1 0 2 FURIN chr15:91419787 5'GT 91419787 Upstream 74bp 8526 chr4 57384873 57384873 1 + T G OV 57384874 + 57384854 57384894 41 TAAACCTTTTCGGTCCTACTGGGAAATGTACCTATCCAAGG TAAACCTTTTCGGTCCTACGGGGAAATGTACCTATCCAAGG < 41bp 0.872403799497196 0.627802303013015 NA NA prediction 0.48920299296836 Functional Loss - ARL9 ENSG00000196503 CDS Human protein_coding chr4:57384874 chr4:57384873 nonsynonymous SNV 0.307 2 20 hm7G_associated_SNPs_8957 0 0 0 0 1 ARL9 chr4:57384844 3'AG 57384844 Downstream 30bp 8527 chr8 24259593 24259593 1 + T G LUSC 24259594 + 24259574 24259614 41 TGGGAGAAGACTGTGATTGTGGCTCTCCTAAGGTATTATTT TGGGAGAAGACTGTGATTGGGGCTCTCCTAAGGTATTATTT < 41bp 0.744570089405151 0.429327610192257 NA NA prediction 0.489140178810302 Functional Loss - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24259594 chr8:24259593 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_8958 0 0 0 0 1 ADAMDEC1 chr8:24259605 5'GT 24259605 Upstream 13bp 8528 chr3 141497732 141497732 1 + T G STAD 141497733 + 141497713 141497753 41 TGCTGGGGAAAGGTGGTTTTGGGGAGGTAAGTGTCTCCCAG TGCTGGGGAAAGGTGGTTTGGGGGAGGTAAGTGTCTCCCAG < 41bp 0.870061444198516 0.625497267370268 NA NA prediction 0.489128353656497 Functional Loss - GRK7 ENSG00000114124 CDS Human protein_coding chr3:141497733 chr3:141497732 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8959 0 0 0 0 1 GRK7 chr3:141497738 5'GT 141497738 Upstream 7bp 8529 chr6 35773835 35773835 1 + T G ACC 35773836 + 35773816 35773856 41 GGCCACAGTCTATAAGATCTGTGCATGGATGCAGCTGGCTG GGCCACAGTCTATAAGATCGGTGCATGGATGCAGCTGGCTG < 41bp 0.849795547133348 0.605251710669474 NA NA prediction 0.489087672927748 Functional Loss - LHFPL5 ENSG00000197753 CDS Human protein_coding chr6:35773836 chr6:35773835 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_8961 0 0 0 0 1 LHFPL5 chr6:35773859 5'GT 35773859 Upstream 25bp 8530 chr7 107398612 107398612 1 + T G LUSC 107398613 + 107398593 107398633 41 GTGATCCTGTGCAGCGAATTGAGCAGTGTACACGAGGTTCT GTGATCCTGTGCAGCGAATGGAGCAGTGTACACGAGGTTCT < 41bp 0.858338057490194 0.613881011296473 NA NA prediction 0.488914092387442 Functional Loss - CBLL1 ENSG00000105879 CDS Human protein_coding chr7:107398613 chr7:107398612 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8962 0 0 1 0 1 CBLL1 chr7:107398588 3'AG 107398588 Downstream 25bp 8531 chr9 19409140 19409140 1 + T G COAD 19409141 + 19409121 19409161 41 TAGCTCGGAGGTGGACTGGTGCGAGGACAACTACACCATCG TAGCTCGGAGGTGGACTGGGGCGAGGACAACTACACCATCG < 41bp 0.839464870257183 0.595033101657497 NA NA prediction 0.488863537199372 Functional Loss - ACER2 ENSG00000177076 CDS Human protein_coding chr9:19409141 chr9:19409140 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8964 0 0 0 0 1 ACER2 chr9:19409190 5'GT 19409190 Upstream 51bp 8532 chr8 143569787 143569787 1 + T G BRCA 143569788 + 143569768 143569808 41 CAGCTTCCCCATGAAGGGCTGGCGGGCCACGGGTGACTGGG CAGCTTCCCCATGAAGGGCGGGCGGGCCACGGGTGACTGGG < 41bp 0.890086372208348 0.645665277494988 NA NA prediction 0.48884218942672 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143569788 chr8:143569787 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8965 0 0 0 0 2 ADGRB1 chr8:143569725 3'AG 143569725 Downstream 63bp 8533 chr8 143569787 143569787 1 + T G BRCA 143569788 + 143569768 143569808 41 CAGCTTCCCCATGAAGGGCTGGCGGGCCACGGGTGACTGGG CAGCTTCCCCATGAAGGGCGGGCGGGCCACGGGTGACTGGG < 41bp 0.890086372208348 0.645665277494988 NA NA prediction 0.48884218942672 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143569788 chr8:143569787 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_8965 0 0 0 0 2 ADGRB1 chr8:143569868 5'GT 143569868 Upstream 82bp 8534 chr19 42218935 42218935 1 + T G LUAD 42218936 + 42218916 42218956 41 AGCAACAACTCCAAACCCGTGGAGGACAAGGATGCTGTGGC AGCAACAACTCCAAACCCGGGGAGGACAAGGATGCTGTGGC < 41bp 0.744409589352898 0.414306459534416 NA NA prediction 0.488819178705797 Functional Loss - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42218936 chr19:42218935 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_8966 0 0 0 0 1 CEACAM5 chr19:42218890 3'AG 42218890 Downstream 46bp 8535 chr15 20490534 20490534 1 + T G LUAD 20490535 + 20490515 20490555 41 GTCAAGAAGTTGTTGGTAGTGGATCCAAAGGCATGTTTTAC GTCAAGAAGTTGTTGGTAGGGGATCCAAAGGCATGTTTTAC < 41bp 0.84809214782632 0.603843872792174 NA NA prediction 0.488496550068292 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20490535 chr15:20490534 . . 0 20 hm7G_associated_SNPs_8969 0 0 0 2 2 CHEK2P2 chr15:20490504 3'AG 20490504 Downstream 31bp 8536 chr15 20490534 20490534 1 + T G LUAD 20490535 + 20490515 20490555 41 GTCAAGAAGTTGTTGGTAGTGGATCCAAAGGCATGTTTTAC GTCAAGAAGTTGTTGGTAGGGGATCCAAAGGCATGTTTTAC < 41bp 0.84809214782632 0.603843872792174 NA NA prediction 0.488496550068292 Functional Loss - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20490535 chr15:20490534 . . 0 20 hm7G_associated_SNPs_8969 0 0 0 2 2 CHEK2P2 chr15:20490588 5'GT 20490588 Upstream 55bp 8537 chr22 51048686 51048686 1 + T G SKCM 51048687 + 51048667 51048707 41 CCTGCTGAGCCGCTTCGCCTGCCACGTCTTTGTCTCCCAGG CCTGCTGAGCCGCTTCGCCGGCCACGTCTTTGTCTCCCAGG < 41bp 0.744243080776317 0.392899518423138 NA NA prediction 0.488486161552634 Functional Loss - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51048687 chr22:51048686 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_8970 0 0 1 0 2 MAPK8IP2 chr22:51048640 3'AG 51048640 Downstream 47bp 8538 chr22 51048686 51048686 1 + T G SKCM 51048687 + 51048667 51048707 41 CCTGCTGAGCCGCTTCGCCTGCCACGTCTTTGTCTCCCAGG CCTGCTGAGCCGCTTCGCCGGCCACGTCTTTGTCTCCCAGG < 41bp 0.744243080776317 0.392899518423138 NA NA prediction 0.488486161552634 Functional Loss - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51048687 chr22:51048686 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_8970 0 0 1 0 2 MAPK8IP2 chr22:51048738 5'GT 51048738 Upstream 53bp 8539 chr11 560977 560977 1 + T G rs542208050 560978 + 560958 560998 41 CCCGGGTGCGCCGCGGCGCTGGGGGCGGCAGGTTGCGGCGG CCCGGGTGCGCCGCGGCGCGGGGGGCGGCAGGTTGCGGCGG < 41bp 0.744213359109851 0.457254505701151 NA NA prediction 0.488426718219702 Functional Loss - RASSF7 ENSG00000099849 UTR5 Human protein_coding chr11:560978 chr11:560977 . . 0 20 hm7G_associated_SNPs_8971 0 0 0 0 1 RASSF7 chr11:561033 5'GT 561033 Upstream 57bp 8540 chr17 18814428 18814428 1 + T G LUSC 18814429 + 18814409 18814449 41 CCCTCAGGGCACAGTCTTTTGCTGAGCGCCTGCGCCTGGGA CCCTCAGGGCACAGTCTTTGGCTGAGCGCCTGCGCCTGGGA < 41bp 0.891648397541145 0.647557096220526 NA NA prediction 0.488182602641237 Functional Loss - PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18814429 chr17:18814428 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_8974 0 0 1 0 1 PRPSAP2 chr17:18814416 3'AG 18814416 Downstream 13bp 8541 chr16 21415559 21415559 1 + T G LUSC 21415560 + 21415540 21415580 41 CTTGATATTATCATCTGCCTGAGGGTGGAGCTGAGGGTGGA CTTGATATTATCATCTGCCGGAGGGTGGAGCTGAGGGTGGA < 41bp 0.842073860541726 0.598124295653456 NA NA prediction 0.487899129776541 Functional Loss - NPIPB3 ENSG00000169246 splicing Human protein_coding chr16:21415560 chr16:21415559 . . 0 20 hm7G_associated_SNPs_8976 0 0 0 0 1 NPIPB3 chr16:21415605 5'GT 21415605 Upstream 47bp 8542 chr9 90343299 90343299 1 + T G COAD 90343300 + 90343280 90343320 41 AGAAAGGCTACGTGACTCCTGTGAAGAATCAGGTGAGACAG AGAAAGGCTACGTGACTCCGGTGAAGAATCAGGTGAGACAG < 41bp 0.8746498499068 0.630902097868803 NA NA prediction 0.487495504075994 Functional Loss - CTSL ENSG00000135047 CDS Human protein_coding chr9:90343300 chr9:90343299 synonymous SNV . 0 20 hm7G_associated_SNPs_8982 0 0 1 0 1 CTSL chr9:90343311 5'GT 90343311 Upstream 13bp 8543 chr18 61600313 61600313 1 + T G SKCM 61600314 + 61600294 61600334 41 CCAGTGCAAATGATGTTTATGAAGAAAAAGCTTCACATTTT CCAGTGCAAATGATGTTTAGGAAGAAAAAGCTTCACATTTT < 41bp 0.852786871159501 0.609046311408619 NA NA prediction 0.487481119501763 Functional Loss - SERPINB10 ENSG00000242550 CDS Human protein_coding chr18:61600314 chr18:61600313 nonsynonymous SNV 0.703 2 20 hm7G_associated_SNPs_8983 0 0 0 0 1 SERPINB10 chr18:61600282 3'AG 61600282 Downstream 32bp 8544 chr5 68411231 68411231 1 + T G UCEC 68411232 + 68411212 68411252 41 TTGTTCTTTCTGTGACAACTGAGGTAAGATAAGAGCAAGAA TTGTTCTTTCTGTGACAACGGAGGTAAGATAAGAGCAAGAA < 41bp 0.857733187698289 0.614006929546407 NA NA prediction 0.487452516303763 Functional Loss - SLC30A5 ENSG00000145740;ENSG00000248664 exonic;splicing Human protein_coding chr5:68411232 chr5:68411231 synonymous SNV . 0 20 hm7G_associated_SNPs_8984 0 0 0 0 1 SLC30A5 chr5:68411234 5'GT 68411234 Upstream 4bp 8545 chr19 6177251 6177251 1 + T G COAD 6177252 + 6177232 6177272 41 TGTTACAGATCACGTGGATTGCAGGAGCAGTGACAAAGGAC TGTTACAGATCACGTGGATGGCAGGAGCAGTGACAAAGGAC < 41bp 0.880415240678202 0.636694804672867 NA NA prediction 0.487440872010669 Functional Loss - ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6177252 chr19:6177251 nonsynonymous SNV 0.351 0 20 hm7G_associated_SNPs_8985 0 0 0 0 1 ACSBG2 chr19:6177240 3'AG 6177240 Downstream 12bp 8546 chr12 48888604 48888604 1 + T G rs144168660 48888605 + 48888585 48888625 41 ATAAGGCCTCCAGATTCCTTGATGACCCCAAAGTTGAGAAG ATAAGGCCTCCAGATTCCTGGATGACCCCAAAGTTGAGAAG < 41bp 0.743623308606737 0.412195688810431 NA NA prediction 0.487246617213474 Functional Loss - C12orf54 ENSG00000177627 CDS Human protein_coding chr12:48888605 chr12:48888604 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_8988 0 0 0 0 1 C12orf54 chr12:48888581 3'AG 48888581 Downstream 24bp 8547 chr5 140076649 140076649 1 + T G UCEC 140076650 + 140076630 140076670 41 TGACTTTATTTGGAATTGCTGATAAGGTAAGCTGAATTGCA TGACTTTATTTGGAATTGCGGATAAGGTAAGCTGAATTGCA < 41bp 0.844035725347057 0.600454560607167 NA NA prediction 0.487162329479781 Functional Loss - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076650 chr5:140076649 synonymous SNV . 0 20 hm7G_associated_SNPs_8989 0 0 1 0 1 HARS2 chr5:140076655 5'GT 140076655 Upstream 7bp 8548 chr10 43288463 43288463 1 + T G LUAD 43288464 + 43288444 43288484 41 CAGACCCTTGCGCTCTTCCTGAACAACAAAAGAAGCGCTGT CAGACCCTTGCGCTCTTCCGGAACAACAAAAGAAGCGCTGT < 41bp 0.877792616163229 0.634245969916008 NA NA prediction 0.487093292494442 Functional Loss - BMS1 ENSG00000165733 CDS Human protein_coding chr10:43288464 chr10:43288463 synonymous SNV . 0 20 hm7G_associated_SNPs_8990 0 0 1 0 1 BMS1 chr10:43288405 3'AG 43288405 Downstream 59bp 8549 chr7 105653459 105653459 1 + T G rs144577911 105653460 + 105653440 105653480 41 GATTTTTACAGGATCCAGCTGGCTCTGGGAAGATTGTGGTC GATTTTTACAGGATCCAGCGGGCTCTGGGAAGATTGTGGTC < 41bp 0.882263379659279 0.638740620835945 NA NA prediction 0.487045517646669 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105653460 chr7:105653459 synonymous SNV . 0 20 hm7G_associated_SNPs_8991 0 0 0 0 1 CDHR3 chr7:105653477 5'GT 105653477 Upstream 19bp 8550 chr10 7755207 7755207 1 + T G LUAD 7755208 + 7755188 7755228 41 CTGTGGGCCGAGCTCTTTATGCACAGGCCAGAGCAAAAGGC CTGTGGGCCGAGCTCTTTAGGCACAGGCCAGAGCAAAAGGC < 41bp 0.882594320278619 0.639150168967668 NA NA prediction 0.4868883026219 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7755208 chr10:7755207 stopgain 0.307 1 20 hm7G_associated_SNPs_8992 0 0 1 0 2 ITIH2 chr10:7755144 3'AG 7755144 Downstream 64bp 8551 chr10 7755207 7755207 1 + T G LUAD 7755208 + 7755188 7755228 41 CTGTGGGCCGAGCTCTTTATGCACAGGCCAGAGCAAAAGGC CTGTGGGCCGAGCTCTTTAGGCACAGGCCAGAGCAAAAGGC < 41bp 0.882594320278619 0.639150168967668 NA NA prediction 0.4868883026219 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7755208 chr10:7755207 stopgain 0.307 1 20 hm7G_associated_SNPs_8992 0 0 1 0 2 ITIH2 chr10:7755248 5'GT 7755248 Upstream 42bp 8552 chr8 120977474 120977474 1 + T G SKCM 120977475 + 120977455 120977495 41 CCTTTTTTTCTTCCCAGGCTGATGAGCCCTGAAAACACACT CCTTTTTTTCTTCCCAGGCGGATGAGCCCTGAAAACACACT < 41bp 0.874745088156306 0.631341814595599 NA NA prediction 0.486806547121415 Functional Loss - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:120977475 chr8:120977474 nonsynonymous SNV 0.886 4 20 hm7G_associated_SNPs_8993 0 0 0 0 1 DEPTOR chr8:120977472 3'AG 120977472 Downstream 3bp 8553 chr12 64819192 64819192 1 + T G COAD 64819193 + 64819173 64819213 41 TCGAAACTGTTGTTAGATATGAAAAGTTTTTCACAGTTGAA TCGAAACTGTTGTTAGATAGGAAAAGTTTTTCACAGTTGAA < 41bp 0.868865551777113 0.625484048812193 NA NA prediction 0.486763005929841 Functional Loss - XPOT ENSG00000184575 CDS Human protein_coding chr12:64819193 chr12:64819192 stopgain 0.999 1 20 hm7G_associated_SNPs_8995 0 0 1 0 2 XPOT chr12:64819118 3'AG 64819118 Downstream 75bp 8554 chr12 64819192 64819192 1 + T G COAD 64819193 + 64819173 64819213 41 TCGAAACTGTTGTTAGATATGAAAAGTTTTTCACAGTTGAA TCGAAACTGTTGTTAGATAGGAAAAGTTTTTCACAGTTGAA < 41bp 0.868865551777113 0.625484048812193 NA NA prediction 0.486763005929841 Functional Loss - XPOT ENSG00000184575 CDS Human protein_coding chr12:64819193 chr12:64819192 stopgain 0.999 1 20 hm7G_associated_SNPs_8995 0 0 1 0 2 XPOT chr12:64819237 5'GT 64819237 Upstream 46bp 8555 chr1 12252955 12252955 1 + T G rs1061622 12252956 + 12252936 12252976 41 ATCCCTGGGAATGCAAGCATGGATGCAGTCTGCACGTCCAC ATCCCTGGGAATGCAAGCAGGGATGCAGTCTGCACGTCCAC < 41bp 0.743377691815391 0.395476652728801 NA NA prediction 0.486755383630783 Functional Loss - TNFRSF1B ENSG00000028137 CDS Human protein_coding chr1:12252956 chr1:12252955 nonsynonymous SNV 0.971 0 20 hm7G_associated_SNPs_8996 0 0 0 0 1 TNFRSF1B chr1:12252920 3'AG 12252920 Downstream 36bp 8556 chr3 186504939 186504939 1 + T G SARC 186504940 + 186504920 186504960 41 GGAAGTTGGATACACTTTGTGACTTGTACGAGACACTGACC GGAAGTTGGATACACTTTGGGACTTGTACGAGACACTGACC < 41bp 0.826878239300573 0.583567448461917 NA NA prediction 0.486621581677312 Functional Loss - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504940 chr3:186504939 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_8999 0 0 1 1 1 EIF4A2 chr3:186504916 3'AG 186504916 Downstream 24bp 8557 chr17 17077343 17077343 1 + T G STAD 17077344 + 17077324 17077364 41 GAGGCCGAGCGGCAGGCCCTGCGGCAGTGCCAGCGTGAGAA GAGGCCGAGCGGCAGGCCCGGCGGCAGTGCCAGCGTGAGAA < 41bp 0.743284775966143 0.403666660919586 NA NA prediction 0.486569551932287 Functional Loss - MPRIP ENSG00000133030 CDS Human protein_coding chr17:17077344 chr17:17077343 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9000 0 0 1 0 1 MPRIP chr17:17077389 5'GT 17077389 Upstream 47bp 8558 chr12 82824753 82824753 1 + T G UCEC 82824754 + 82824734 82824774 41 TGTGGTCGTAATGCCAGAATGTCAGCATGTTTGGTATGGTT TGTGGTCGTAATGCCAGAAGGTCAGCATGTTTGGTATGGTT < 41bp 0.74326493519103 0.432390316178889 NA NA prediction 0.486529870382061 Functional Loss - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82824754 chr12:82824753 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9002 0 0 0 0 2 METTL25 chr12:82824672 3'AG 82824672 Downstream 82bp 8559 chr12 82824753 82824753 1 + T G UCEC 82824754 + 82824734 82824774 41 TGTGGTCGTAATGCCAGAATGTCAGCATGTTTGGTATGGTT TGTGGTCGTAATGCCAGAAGGTCAGCATGTTTGGTATGGTT < 41bp 0.74326493519103 0.432390316178889 NA NA prediction 0.486529870382061 Functional Loss - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82824754 chr12:82824753 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9002 0 0 0 0 2 METTL25 chr12:82824766 5'GT 82824766 Upstream 14bp 8560 chr2 48734518 48734518 1 + T G HNSC 48734519 + 48734499 48734539 41 GTAAGTCAGTGCATTTTTATGCCGAGGTGAGTGTAGATTTA GTAAGTCAGTGCATTTTTAGGCCGAGGTGAGTGTAGATTTA < 41bp 0.869465830877596 0.62622668507067 NA NA prediction 0.486478291613852 Functional Loss - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48734519 chr2:48734518 stopgain 0.997 1 20 hm7G_associated_SNPs_9003 0 0 0 0 1 PPP1R21 chr2:48734524 5'GT 48734524 Upstream 7bp 8561 chr5 35876108 35876108 1 + T G ESCA 35876109 + 35876089 35876129 41 TAAATGTGAGTTTCAATCCTGAAAGTTTCCTGGACTGCCAG TAAATGTGAGTTTCAATCCGGAAAGTTTCCTGGACTGCCAG < 41bp 0.852181434354296 0.608977906847449 NA NA prediction 0.486407055013694 Functional Loss - IL7R ENSG00000168685 CDS Human protein_coding chr5:35876109 chr5:35876108 synonymous SNV . 0 20 hm7G_associated_SNPs_9004 0 0 0 0 1 IL7R chr5:35876085 3'AG 35876085 Downstream 24bp 8562 chr11 22281285 22281285 1 + T G LGG 22281286 + 22281266 22281306 41 TCTGCCTGGATCACAAAAATGGGTAAGCTGGCCAAATCATT TCTGCCTGGATCACAAAAAGGGGTAAGCTGGCCAAATCATT < 41bp 0.743197023656452 0.431319614265723 NA NA prediction 0.486394047312904 Functional Loss - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22281286 chr11:22281285 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_9006 0 0 0 0 1 ANO5 chr11:22281287 5'GT 22281287 Upstream 3bp 8563 chr6 32609969 32609969 1 + T G rs707963 32609970 + 32609950 32609990 41 CCTTCCTCCCTTCTGCTGATGAGATTTATGACTGCAAGGTG CCTTCCTCCCTTCTGCTGAGGAGATTTATGACTGCAAGGTG < 41bp 0.743154077557627 0.42519380121732 NA NA prediction 0.486308155115255 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609970 chr6:32609969 nonsynonymous SNV 0.829 0 20 hm7G_associated_SNPs_9008 0 0 0 1 1 HLA-DQA1 chr6:32610030 5'GT 32610030 Upstream 62bp 8564 chr11 75282848 75282848 1 + T G UCS 75282849 + 75282829 75282869 41 CACCTGGCTGGGCTGGGCCTGACTGAGGCCATTGACAAGAA CACCTGGCTGGGCTGGGCCGGACTGAGGCCATTGACAAGAA < 41bp 0.867139922692621 0.62407825523414 NA NA prediction 0.486123334916962 Functional Loss - SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75282849 chr11:75282848 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_9011 0 0 1 0 1 SERPINH1 chr11:75282826 3'AG 75282826 Downstream 23bp 8565 chr11 59807962 59807962 1 + T G SKCM 59807963 + 59807943 59807983 41 AAGTCTTGATGCTCCTCGCTGTCTTGATTTGGACCGGTGCT AAGTCTTGATGCTCCTCGCGGTCTTGATTTGGACCGGTGCT < 41bp 0.743042000936025 0.452554800245214 NA NA prediction 0.486084001872049 Functional Loss - OOSP2 ENSG00000149507 CDS Human protein_coding chr11:59807963 chr11:59807962 synonymous SNV . 0 20 hm7G_associated_SNPs_9012 0 0 0 0 1 OOSP2 chr11:59807996 5'GT 59807996 Upstream 35bp 8566 chr19 44536032 44536032 1 + T G LUSC 44536033 + 44536013 44536053 41 AACACATGAAGAATTTTCCTGCAAGCAAATTTGGGAACAAA AACACATGAAGAATTTTCCGGCAAGCAAATTTGGGAACAAA < 41bp 0.743024007048633 0.449833612042057 NA NA prediction 0.486048014097265 Functional Loss - ZNF222 ENSG00000159885 CDS Human protein_coding chr19:44536033 chr19:44536032 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_9013 0 0 1 0 1 ZNF222 chr19:44535970 3'AG 44535970 Downstream 63bp 8567 chr1 3688053 3688053 1 + T G rs79789173 3688054 + 3688034 3688074 41 CAACAGTCAGAGGCCTTCCTGACCAGCAAATCCAAGAAGGG CAACAGTCAGAGGCCTTCCGGACCAGCAAATCCAAGAAGGG < 41bp 0.742761385812476 0.423353659080062 NA NA prediction 0.485522771624951 Functional Loss - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3688054 chr1:3688053 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_9017 0 0 0 0 1 CCDC27 chr1:3687965 3'AG 3687965 Downstream 89bp 8568 chr22 41726037 41726037 1 + T G STAD 41726038 + 41726018 41726058 41 CCTCTGCAGGATGAAAGCGTGACTCAGCTTGGTCAGGAGCT CCTCTGCAGGATGAAAGCGGGACTCAGCTTGGTCAGGAGCT < 41bp 0.742737817792754 0.401402337853906 NA NA prediction 0.485475635585507 Functional Loss - ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41726038 chr22:41726037 nonsynonymous SNV 0.936 4 20 hm7G_associated_SNPs_9018 0 0 1 0 2 ZC3H7B chr22:41726027 3'AG 41726027 Downstream 11bp 8569 chr22 41726037 41726037 1 + T G STAD 41726038 + 41726018 41726058 41 CCTCTGCAGGATGAAAGCGTGACTCAGCTTGGTCAGGAGCT CCTCTGCAGGATGAAAGCGGGACTCAGCTTGGTCAGGAGCT < 41bp 0.742737817792754 0.401402337853906 NA NA prediction 0.485475635585507 Functional Loss - ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41726038 chr22:41726037 nonsynonymous SNV 0.936 4 20 hm7G_associated_SNPs_9018 0 0 1 0 2 ZC3H7B chr22:41726107 5'GT 41726107 Upstream 71bp 8570 chrX 153543624 153543624 1 + T G rs139525582 153543625 + 153543605 153543645 41 CCAGGTACTCTACTTTCTCTGAGATATTCAACAAGGAGTAC CCAGGTACTCTACTTTCTCGGAGATATTCAACAAGGAGTAC < 41bp 0.742723215078607 0.399710343325538 NA NA prediction 0.485446430157213 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153543625 chrX:153543624 synonymous SNV . 0 20 hm7G_associated_SNPs_9019 0 0 0 0 1 TKTL1 chrX:153543687 5'GT 153543687 Upstream 64bp 8571 chr10 86185512 86185512 1 + T G SKCM 86185513 + 86185493 86185533 41 GTGACAATATGAACCGCTTTGACCGACCAGACAGAAATGTT GTGACAATATGAACCGCTTGGACCGACCAGACAGAAATGTT < 41bp 0.742624985103507 0.413136065854818 NA NA prediction 0.485249970207013 Functional Loss - CCSER2 ENSG00000107771 CDS Human protein_coding chr10:86185513 chr10:86185512 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_9023 0 0 1 0 1 CCSER2 chr10:86185487 3'AG 86185487 Downstream 26bp 8572 chr7 6621278 6621278 1 + T G OV 6621279 + 6621259 6621299 41 GAATGTCTTCAGAGAGCCGTGCATGGATTGCTTCATTACCT GAATGTCTTCAGAGAGCCGGGCATGGATTGCTTCATTACCT < 41bp 0.74261426693246 0.410646567187051 NA NA prediction 0.485228533864921 Functional Loss - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6621279 chr7:6621278 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_9024 0 0 1 0 2 ZDHHC4 chr7:6621238 3'AG 6621238 Downstream 41bp 8573 chr7 6621278 6621278 1 + T G OV 6621279 + 6621259 6621299 41 GAATGTCTTCAGAGAGCCGTGCATGGATTGCTTCATTACCT GAATGTCTTCAGAGAGCCGGGCATGGATTGCTTCATTACCT < 41bp 0.74261426693246 0.410646567187051 NA NA prediction 0.485228533864921 Functional Loss - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6621279 chr7:6621278 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_9024 0 0 1 0 2 ZDHHC4 chr7:6621311 5'GT 6621311 Upstream 34bp 8574 chr9 133553974 133553974 1 + T G LUSC 133553975 + 133553955 133553995 41 AACTCACACAACACCTTCCTGGGGATCCCAGGTGTGCCCGG AACTCACACAACACCTTCCGGGGGATCCCAGGTGTGCCCGG < 41bp 0.883286556826358 0.640831664586561 NA NA prediction 0.484909784479593 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553975 chr9:133553974 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_9025 0 0 0 0 2 PRDM12 chr9:133553916 3'AG 133553916 Downstream 59bp 8575 chr9 133553974 133553974 1 + T G LUSC 133553975 + 133553955 133553995 41 AACTCACACAACACCTTCCTGGGGATCCCAGGTGTGCCCGG AACTCACACAACACCTTCCGGGGGATCCCAGGTGTGCCCGG < 41bp 0.883286556826358 0.640831664586561 NA NA prediction 0.484909784479593 Functional Loss - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553975 chr9:133553974 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_9025 0 0 0 0 2 PRDM12 chr9:133554027 5'GT 133554027 Upstream 54bp 8576 chr16 4732863 4732863 1 + T G SKCM 4732864 + 4732844 4732884 41 CCCCCATCCACGAAGAGGATGAGGAGAAGCTCTCCGAGGAC CCCCCATCCACGAAGAGGAGGAGGAGAAGCTCTCCGAGGAC < 41bp 0.742444277470281 0.404129424787884 NA NA prediction 0.484888554940562 Functional Loss - MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4732864 chr16:4732863 nonsynonymous SNV 0.965 2 20 hm7G_associated_SNPs_9026 0 0 1 0 2 MGRN1 chr16:4732824 3'AG 4732824 Downstream 40bp 8577 chr16 4732863 4732863 1 + T G SKCM 4732864 + 4732844 4732884 41 CCCCCATCCACGAAGAGGATGAGGAGAAGCTCTCCGAGGAC CCCCCATCCACGAAGAGGAGGAGGAGAAGCTCTCCGAGGAC < 41bp 0.742444277470281 0.404129424787884 NA NA prediction 0.484888554940562 Functional Loss - MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4732864 chr16:4732863 nonsynonymous SNV 0.965 2 20 hm7G_associated_SNPs_9026 0 0 1 0 2 MGRN1 chr16:4732947 5'GT 4732947 Upstream 85bp 8578 chr6 29911056 29911056 1 - A C rs1071743 29911055 - 29911035 29911075 41 CAGCCATACATTATCTGGATGGTGTGAGAACCTGGCCCCGA CAGCCATACATTATCTGGAGGGTGTGAGAACCTGGCCCCGA < 41bp 0.742424317060986 0.42905214496009 NA NA prediction 0.484848634121972 Functional Loss - HLA-A ENSG00000206503 CDS Human protein_coding chr6:29911055 chr6:29911056 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_9028 0 0 1 0 1 HLA-A chr6:29911028 5'GT 29911028 Upstream 29bp 8579 chr10 37422855 37422855 1 + T G KIRC 37422856 + 37422836 37422876 41 TATTTTAGCACAGCCCTCATGCTTGCTGTATGTCATGGATC TATTTTAGCACAGCCCTCAGGCTTGCTGTATGTCATGGATC < 41bp 0.742419396667591 0.419325431958231 NA NA prediction 0.484838793335182 Functional Loss - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37422856 chr10:37422855 nonsynonymous SNV 0.008 1 20 hm7G_associated_SNPs_9029 0 0 0 0 1 ANKRD30A chr10:37422844 3'AG 37422844 Downstream 12bp 8580 chr8 86038971 86038971 1 + T G UCS 86038972 + 86038952 86038992 41 GAGAGAAGAGATGGAGAGCTGAGCAAGCCGAAAATAAACTC GAGAGAAGAGATGGAGAGCGGAGCAAGCCGAAAATAAACTC < 41bp 0.871663864414592 0.629311555386673 NA NA prediction 0.484704618055836 Functional Loss - LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86038972 chr8:86038971 synonymous SNV . 0 20 hm7G_associated_SNPs_9030 0 0 0 0 1 LRRCC1 chr8:86038924 3'AG 86038924 Downstream 48bp 8581 chr16 89922632 89922632 1 + T G STAD 89922633 + 89922613 89922653 41 CCCGGTGCGGGGCGAGGGCTGGGCTGCCCGCGGTGAGTGAG CCCGGTGCGGGGCGAGGGCGGGGCTGCCCGCGGTGAGTGAG < 41bp 0.888605283661107 0.646280394656937 NA NA prediction 0.484649778008341 Functional Loss - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89922633 chr16:89922632 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_9031 0 0 1 0 1 SPIRE2 chr16:89922644 5'GT 89922644 Upstream 13bp 8582 chr8 104225165 104225165 1 + T G SKCM 104225166 + 104225146 104225186 41 GGCATGCTGGAAGATGGACTGCCCTCCAATGGTGTGCCCCG GGCATGCTGGAAGATGGACGGCCCTCCAATGGTGTGCCCCG < 41bp 0.742317010847424 0.406461290504841 NA NA prediction 0.484634021694847 Functional Loss - BAALC ENSG00000164929 CDS Human protein_coding chr8:104225166 chr8:104225165 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9032 0 0 0 0 1 BAALC chr8:104225147 3'AG 104225147 Downstream 19bp 8583 chr2 185798359 185798359 1 + T G COAD 185798360 + 185798340 185798380 41 AACTGAAACAAAGGGAATTTGCTCGAAATGTAGCATCTAAA AACTGAAACAAAGGGAATTGGCTCGAAATGTAGCATCTAAA < 41bp 0.742307431214941 0.441954274380403 NA NA prediction 0.484614862429882 Functional Loss - ZNF804A ENSG00000170396 CDS Human protein_coding chr2:185798360 chr2:185798359 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9034 0 0 0 0 1 ZNF804A chr2:185798330 3'AG 185798330 Downstream 30bp 8584 chr12 64853974 64853974 1 + T G UCEC 64853975 + 64853955 64853995 41 TCTCTTTTTTAAAGAAAACTGGTGATTTATTTGCTATCAAA TCTCTTTTTTAAAGAAAACGGGTGATTTATTTGCTATCAAA < 41bp 0.742123600374271 0.439056049955428 NA NA prediction 0.484247200748542 Functional Loss - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64853975 chr12:64853974 synonymous SNV . 0 20 hm7G_associated_SNPs_9037 0 0 1 0 1 TBK1 chr12:64853969 3'AG 64853969 Downstream 6bp 8585 chr21 30412971 30412971 1 + T G COAD 30412972 + 30412952 30412992 41 AAGCATTTGGTAATTCTACTGAAAAGTTGGATGAAGAACTA AAGCATTTGGTAATTCTACGGAAAAGTTGGATGAAGAACTA < 41bp 0.857797244515821 0.615677699579673 NA NA prediction 0.484239089872296 Functional Loss - USP16 ENSG00000156256 CDS Human protein_coding chr21:30412972 chr21:30412971 synonymous SNV . 0 20 hm7G_associated_SNPs_9038 0 0 1 0 2 USP16 chr21:30412930 3'AG 30412930 Downstream 42bp 8586 chr21 30412971 30412971 1 + T G COAD 30412972 + 30412952 30412992 41 AAGCATTTGGTAATTCTACTGAAAAGTTGGATGAAGAACTA AAGCATTTGGTAATTCTACGGAAAAGTTGGATGAAGAACTA < 41bp 0.857797244515821 0.615677699579673 NA NA prediction 0.484239089872296 Functional Loss - USP16 ENSG00000156256 CDS Human protein_coding chr21:30412972 chr21:30412971 synonymous SNV . 0 20 hm7G_associated_SNPs_9038 0 0 1 0 2 USP16 chr21:30413008 5'GT 30413008 Upstream 38bp 8587 chr11 134151330 134151330 1 + T G BRCA 134151331 + 134151311 134151351 41 TTTGACTTCTCTGGGAACCTGGACCTGGAGTATGTGGTGTT TTTGACTTCTCTGGGAACCGGGACCTGGAGTATGTGGTGTT < 41bp 0.882243070989118 0.64013414147603 NA NA prediction 0.484217859026176 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134151331 chr11:134151330 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_9039 0 0 0 0 2 GLB1L3 chr11:134151271 3'AG 134151271 Downstream 60bp 8588 chr11 134151330 134151330 1 + T G BRCA 134151331 + 134151311 134151351 41 TTTGACTTCTCTGGGAACCTGGACCTGGAGTATGTGGTGTT TTTGACTTCTCTGGGAACCGGGACCTGGAGTATGTGGTGTT < 41bp 0.882243070989118 0.64013414147603 NA NA prediction 0.484217859026176 Functional Loss - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134151331 chr11:134151330 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_9039 0 0 0 0 2 GLB1L3 chr11:134151339 5'GT 134151339 Upstream 10bp 8589 chr1 148933298 148933298 1 + T G STAD 148933299 + 148933279 148933319 41 TGCTGCCCGCAGGATATTGTGGCTGGAGACATGAGCAAGAA TGCTGCCCGCAGGATATTGGGGCTGGAGACATGAGCAAGAA < 41bp 0.870723698218472 0.628618416849516 NA NA prediction 0.484210562737912 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148933299 chr1:148933298 . . 0 20 hm7G_associated_SNPs_9040 0 0 0 1 2 LOC645166 chr1:148933291 3'AG 148933291 Downstream 8bp 8590 chr1 148933298 148933298 1 + T G STAD 148933299 + 148933279 148933319 41 TGCTGCCCGCAGGATATTGTGGCTGGAGACATGAGCAAGAA TGCTGCCCGCAGGATATTGGGGCTGGAGACATGAGCAAGAA < 41bp 0.870723698218472 0.628618416849516 NA NA prediction 0.484210562737912 Functional Loss - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148933299 chr1:148933298 . . 0 20 hm7G_associated_SNPs_9040 0 0 0 1 2 LOC645166 chr1:148933368 5'GT 148933368 Upstream 71bp 8591 chrX 70516749 70516749 1 + T G KIRC 70516750 + 70516730 70516770 41 AGCCTGGCTCCTTTGAGTATGAATATGCCATGCGCTGGAAG AGCCTGGCTCCTTTGAGTAGGAATATGCCATGCGCTGGAAG < 41bp 0.883077713703692 0.641036038124502 NA NA prediction 0.484083351158379 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70516750 chrX:70516749 stopgain 1.000 1 20 hm7G_associated_SNPs_9042 0 0 0 0 1 NONO chrX:70516701 3'AG 70516701 Downstream 49bp 8592 chr15 38233886 38233886 1 + T G GBM 38233887 + 38233867 38233907 41 CCTAGGTAATGAAGGAGTATGCATTTGTGACCCAGCTCTGT CCTAGGTAATGAAGGAGTAGGCATTTGTGACCCAGCTCTGT < 41bp 0.864366020525999 0.622390056973573 NA NA prediction 0.483951927104853 Functional Loss - TMCO5A ENSG00000166069 CDS Human protein_coding chr15:38233887 chr15:38233886 stopgain 0.717 0 20 hm7G_associated_SNPs_9043 0 0 0 0 2 TMCO5A chr15:38233872 3'AG 38233872 Downstream 15bp 8593 chr15 38233886 38233886 1 + T G GBM 38233887 + 38233867 38233907 41 CCTAGGTAATGAAGGAGTATGCATTTGTGACCCAGCTCTGT CCTAGGTAATGAAGGAGTAGGCATTTGTGACCCAGCTCTGT < 41bp 0.864366020525999 0.622390056973573 NA NA prediction 0.483951927104853 Functional Loss - TMCO5A ENSG00000166069 CDS Human protein_coding chr15:38233887 chr15:38233886 stopgain 0.717 0 20 hm7G_associated_SNPs_9043 0 0 0 0 2 TMCO5A chr15:38233931 5'GT 38233931 Upstream 46bp 8594 chr5 170736729 170736729 1 + T G rs150863748 170736730 + 170736710 170736750 41 TGCCCACGGTCTCCAGCCTTGGCGGTCTCAATTTCCCCTGG TGCCCACGGTCTCCAGCCTGGGCGGTCTCAATTTCCCCTGG < 41bp 0.74189165979944 0.41275461625052 NA NA prediction 0.48378331959888 Functional Loss - TLX3 ENSG00000164438 CDS Human protein_coding chr5:170736730 chr5:170736729 synonymous SNV . 0 20 hm7G_associated_SNPs_9044 0 0 0 0 1 TLX3 chr5:170736790 5'GT 170736790 Upstream 62bp 8595 chr2 1263157 1263157 1 + T G HNSC 1263158 + 1263138 1263178 41 GCAGGTGAGCACATTCGATTGGGTGCGAGCAGAAAGGACCT GCAGGTGAGCACATTCGATGGGGTGCGAGCAGAAAGGACCT < 41bp 0.741848502532079 0.409294261647077 NA NA prediction 0.483697005064158 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1263158 chr2:1263157 nonsynonymous SNV 0.038 3 20 hm7G_associated_SNPs_9045 0 0 0 0 2 SNTG2 chr2:1263142 3'AG 1263142 Downstream 16bp 8596 chr2 1263157 1263157 1 + T G HNSC 1263158 + 1263138 1263178 41 GCAGGTGAGCACATTCGATTGGGTGCGAGCAGAAAGGACCT GCAGGTGAGCACATTCGATGGGGTGCGAGCAGAAAGGACCT < 41bp 0.741848502532079 0.409294261647077 NA NA prediction 0.483697005064158 Functional Loss - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1263158 chr2:1263157 nonsynonymous SNV 0.038 3 20 hm7G_associated_SNPs_9045 0 0 0 0 2 SNTG2 chr2:1263213 5'GT 1263213 Upstream 57bp 8597 chr1 241695780 241695780 1 + T G UCEC 241695781 + 241695761 241695801 41 TTCAAAGGAAAAAAGTAGCTGTCATTGGTGGTGGCTTGGTA TTCAAAGGAAAAAAGTAGCGGTCATTGGTGGTGGCTTGGTA < 41bp 0.74181498949281 0.43803154053016 NA NA prediction 0.483629978985619 Functional Loss - KMO ENSG00000117009 CDS Human protein_coding chr1:241695781 chr1:241695780 synonymous SNV . 0 20 hm7G_associated_SNPs_9047 0 0 0 0 1 KMO chr1:241695798 5'GT 241695798 Upstream 19bp 8598 chr19 15784520 15784520 1 + T G COAD 15784521 + 15784501 15784541 41 CCCAAAACGGAACTGGTTTTGGGGTCACCTGGGCCTGGTGA CCCAAAACGGAACTGGTTTGGGGGTCACCTGGGCCTGGTGA < 41bp 0.741718106310443 0.405512143001306 NA NA prediction 0.483436212620887 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15784521 chr19:15784520 nonsynonymous SNV 0.053 2 20 hm7G_associated_SNPs_9048 0 0 0 0 1 CYP4F12 chr19:15784537 5'GT 15784537 Upstream 18bp 8599 chr4 38945080 38945080 1 + T G COAD 38945081 + 38945061 38945101 41 TTTTCTCCTCTCACAGGGCTGCAACAGTACAACGTACATAC TTTTCTCCTCTCACAGGGCGGCAACAGTACAACGTACATAC < 41bp 0.862204870563451 0.620529703169292 NA NA prediction 0.483350334788319 Functional Loss - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38945081 chr4:38945080 nonsynonymous SNV 0.951 0 20 hm7G_associated_SNPs_9051 0 0 0 0 1 FAM114A1 chr4:38945077 3'AG 38945077 Downstream 4bp 8600 chr1 179452320 179452320 1 + T G BRCA 179452321 + 179452301 179452341 41 GGCTTTTGAAGATAGGCAATGAAATTAACAACGGTAACATT GGCTTTTGAAGATAGGCAAGGAAATTAACAACGGTAACATT < 41bp 0.741630743055748 0.424268659709638 NA NA prediction 0.483261486111497 Functional Loss - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179452321 chr1:179452320 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_9052 0 0 0 0 1 AXDND1 chr1:179452356 5'GT 179452356 Upstream 37bp 8601 chr5 80561998 80561998 1 + T G LIHC 80561999 + 80561979 80562019 41 ATCGATGGAGTCAATTACCTGGTGGATTGTGAAAAGAAGTT ATCGATGGAGTCAATTACCGGGTGGATTGTGAAAAGAAGTT < 41bp 0.845404791686251 0.603839812459239 NA NA prediction 0.483129958454023 Functional Loss - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80561999 chr5:80561998 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_9054 0 0 0 0 1 CKMT2 chr5:80561958 3'AG 80561958 Downstream 41bp 8602 chr9 6252963 6252963 1 + T G UCEC 6252964 + 6252944 6252984 41 AAAGTTATGAGATATATGTTGAAGACTTGAAAAAAGATGAA AAAGTTATGAGATATATGTGGAAGACTTGAAAAAAGATGAA < 41bp 0.844018288409099 0.602586372404457 NA NA prediction 0.482863832009283 Functional Loss - IL33 ENSG00000137033 CDS Human protein_coding chr9:6252964 chr9:6252963 synonymous SNV . 0 20 hm7G_associated_SNPs_9055 0 0 0 0 2 IL33 chr9:6252866 3'AG 6252866 Downstream 98bp 8603 chr9 6252963 6252963 1 + T G UCEC 6252964 + 6252944 6252984 41 AAAGTTATGAGATATATGTTGAAGACTTGAAAAAAGATGAA AAAGTTATGAGATATATGTGGAAGACTTGAAAAAAGATGAA < 41bp 0.844018288409099 0.602586372404457 NA NA prediction 0.482863832009283 Functional Loss - IL33 ENSG00000137033 CDS Human protein_coding chr9:6252964 chr9:6252963 synonymous SNV . 0 20 hm7G_associated_SNPs_9055 0 0 0 0 2 IL33 chr9:6252991 5'GT 6252991 Upstream 29bp 8604 chr6 71238106 71238106 1 + T G SKCM 71238107 + 71238087 71238127 41 TTAGTGTAGAAGAAGAGGATGGTTCTGAAGATGGAGTACAT TTAGTGTAGAAGAAGAGGAGGGTTCTGAAGATGGAGTACAT < 41bp 0.863151315088937 0.621785691324585 NA NA prediction 0.482731247528704 Functional Loss - FAM135A ENSG00000082269 CDS Human protein_coding chr6:71238107 chr6:71238106 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_9056 0 0 1 0 1 FAM135A chr6:71238155 5'GT 71238155 Upstream 50bp 8605 chrX 48543938 48543938 1 + T G UCEC 48543939 + 48543919 48543959 41 ACCCTACACCTCTCCAGGCTGGTCGGCTGCTCTGGGAACAG ACCCTACACCTCTCCAGGCGGGTCGGCTGCTCTGGGAACAG < 41bp 0.887406257355931 0.646167602044382 NA NA prediction 0.482477310623098 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48543939 chrX:48543938 synonymous SNV . 0 20 hm7G_associated_SNPs_9060 0 0 0 0 2 WAS chrX:48543936 3'AG 48543936 Downstream 3bp 8606 chrX 48543938 48543938 1 + T G UCEC 48543939 + 48543919 48543959 41 ACCCTACACCTCTCCAGGCTGGTCGGCTGCTCTGGGAACAG ACCCTACACCTCTCCAGGCGGGTCGGCTGCTCTGGGAACAG < 41bp 0.887406257355931 0.646167602044382 NA NA prediction 0.482477310623098 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48543939 chrX:48543938 synonymous SNV . 0 20 hm7G_associated_SNPs_9060 0 0 0 0 2 WAS chrX:48544022 5'GT 48544022 Upstream 85bp 8607 chr2 197584294 197584294 1 + T G UCEC 197584295 + 197584275 197584315 41 ACAATCATGTTGGAGAATGTGCTGGCTTCTCACAGTAAGAT ACAATCATGTTGGAGAATGGGCTGGCTTCTCACAGTAAGAT < 41bp 0.741050475138258 0.41368086467626 NA NA prediction 0.482100950276515 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197584295 chr2:197584294 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_9067 0 0 1 0 2 CCDC150 chr2:197584221 3'AG 197584221 Downstream 74bp 8608 chr2 197584294 197584294 1 + T G UCEC 197584295 + 197584275 197584315 41 ACAATCATGTTGGAGAATGTGCTGGCTTCTCACAGTAAGAT ACAATCATGTTGGAGAATGGGCTGGCTTCTCACAGTAAGAT < 41bp 0.741050475138258 0.41368086467626 NA NA prediction 0.482100950276515 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197584295 chr2:197584294 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_9067 0 0 1 0 2 CCDC150 chr2:197584390 5'GT 197584390 Upstream 97bp 8609 chr1 201286821 201286821 1 + T G UCEC 201286822 + 201286802 201286842 41 AGGAGCACCACCAACAAGCTGGAGACCCGGAGGCAGAATGG AGGAGCACCACCAACAAGCGGGAGACCCGGAGGCAGAATGG < 41bp 0.895855157164427 0.654806300204653 NA NA prediction 0.482097713919548 Functional Loss - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201286822 chr1:201286821 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9068 0 0 0 0 1 PKP1 chr1:201286907 5'GT 201286907 Upstream 87bp 8610 chrX 70598296 70598296 1 + T G UCEC 70598297 + 70598277 70598317 41 CCTGTGATAAAATCTAGAATGATAGAGGTGAGCAACACTGG CCTGTGATAAAATCTAGAAGGATAGAGGTGAGCAACACTGG < 41bp 0.741030580906824 0.423568853592126 NA NA prediction 0.482061161813647 Functional Loss - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70598297 chrX:70598296 nonsynonymous SNV 0.858 0 20 hm7G_associated_SNPs_9069 0 0 0 0 1 TAF1 chrX:70598303 5'GT 70598303 Upstream 8bp 8611 chr19 51293690 51293690 1 + T G STAD 51293691 + 51293671 51293711 41 AATGGCCGGCCTGGGGTTTTGGGGCCACCCTGCTGGACCTC AATGGCCGGCCTGGGGTTTGGGGGCCACCCTGCTGGACCTC < 41bp 0.740992645875057 0.406371418357163 NA NA prediction 0.481985291750114 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51293691 chr19:51293690 nonsynonymous SNV 0.477 0 20 hm7G_associated_SNPs_9070 0 0 0 0 1 ACPT chr19:51293782 5'GT 51293782 Upstream 93bp 8612 chr6 123122483 123122483 1 + T G rs148272814 123122484 + 123122464 123122504 41 CCTGTAGTCACCAGTAAAGTGTACAATGCAGTAGCAAACCT CCTGTAGTCACCAGTAAAGGGTACAATGCAGTAGCAAACCT < 41bp 0.877951038550262 0.637009231004425 NA NA prediction 0.481883615091674 Functional Loss - SMPDL3A ENSG00000172594 CDS Human protein_coding chr6:123122484 chr6:123122483 nonsynonymous SNV 0.761 5 20 hm7G_associated_SNPs_9071 0 0 0 0 2 SMPDL3A chr6:123122455 3'AG 123122455 Downstream 29bp 8613 chr6 123122483 123122483 1 + T G rs148272814 123122484 + 123122464 123122504 41 CCTGTAGTCACCAGTAAAGTGTACAATGCAGTAGCAAACCT CCTGTAGTCACCAGTAAAGGGTACAATGCAGTAGCAAACCT < 41bp 0.877951038550262 0.637009231004425 NA NA prediction 0.481883615091674 Functional Loss - SMPDL3A ENSG00000172594 CDS Human protein_coding chr6:123122484 chr6:123122483 nonsynonymous SNV 0.761 5 20 hm7G_associated_SNPs_9071 0 0 0 0 2 SMPDL3A chr6:123122551 5'GT 123122551 Upstream 69bp 8614 chr4 110454805 110454805 1 + T G BRCA 110454806 + 110454786 110454826 41 ACTTCATAGAGGATGTGCTTGGATATACTAATTTTGCATCA ACTTCATAGAGGATGTGCTGGGATATACTAATTTTGCATCA < 41bp 0.740938703383569 0.41354114098642 NA NA prediction 0.481877406767138 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110454806 chr4:110454805 synonymous SNV . 0 20 hm7G_associated_SNPs_9072 0 0 1 0 2 SEC24B chr4:110454749 3'AG 110454749 Downstream 57bp 8615 chr4 110454805 110454805 1 + T G BRCA 110454806 + 110454786 110454826 41 ACTTCATAGAGGATGTGCTTGGATATACTAATTTTGCATCA ACTTCATAGAGGATGTGCTGGGATATACTAATTTTGCATCA < 41bp 0.740938703383569 0.41354114098642 NA NA prediction 0.481877406767138 Functional Loss - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110454806 chr4:110454805 synonymous SNV . 0 20 hm7G_associated_SNPs_9072 0 0 1 0 2 SEC24B chr4:110454841 5'GT 110454841 Upstream 37bp 8616 chr10 135370649 135370649 1 - A C UCEC 135370648 - 135370628 135370668 41 TCTCCCAGGAAGCACACCATGTTGCAGGAGTGCAAGGAGAG TCTCCCAGGAAGCACACCAGGTTGCAGGAGTGCAAGGAGAG < 41bp 0.873321168000763 0.632395533487317 NA NA prediction 0.481851269026893 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370648 chr10:135370649 nonsynonymous SNV 0.118 1 20 hm7G_associated_SNPs_9073 0 0 0 0 2 SYCE1 chr10:135370571 5'GT 135370571 Upstream 79bp 8617 chr10 135370649 135370649 1 - A C UCEC 135370648 - 135370628 135370668 41 TCTCCCAGGAAGCACACCATGTTGCAGGAGTGCAAGGAGAG TCTCCCAGGAAGCACACCAGGTTGCAGGAGTGCAAGGAGAG < 41bp 0.873321168000763 0.632395533487317 NA NA prediction 0.481851269026893 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370648 chr10:135370649 nonsynonymous SNV 0.118 1 20 hm7G_associated_SNPs_9073 0 0 0 0 2 SYCE1 chr10:135370660 3'AG 135370660 Downstream 12bp 8618 chr10 90492227 90492227 1 + T G rs41284084 90492228 + 90492208 90492248 41 AAAAGATTAAGATATTTTTTGCACTGGCTCCAGTTGTCACA AAAAGATTAAGATATTTTTGGCACTGGCTCCAGTTGTCACA < 41bp 0.869845272761979 0.628966367011055 NA NA prediction 0.481757811501847 Functional Loss - LIPK ENSG00000204021 CDS Human protein_coding chr10:90492228 chr10:90492227 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_9074 0 0 0 0 2 LIPK chr10:90492172 3'AG 90492172 Downstream 56bp 8619 chr10 90492227 90492227 1 + T G rs41284084 90492228 + 90492208 90492248 41 AAAAGATTAAGATATTTTTTGCACTGGCTCCAGTTGTCACA AAAAGATTAAGATATTTTTGGCACTGGCTCCAGTTGTCACA < 41bp 0.869845272761979 0.628966367011055 NA NA prediction 0.481757811501847 Functional Loss - LIPK ENSG00000204021 CDS Human protein_coding chr10:90492228 chr10:90492227 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_9074 0 0 0 0 2 LIPK chr10:90492308 5'GT 90492308 Upstream 82bp 8620 chr12 51449970 51449970 1 + T G KIRC 51449971 + 51449951 51449991 41 ATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAACCA ATACATGATATCTTGGCTCGGAGAGAGTGTTTCTCTAACCA < 41bp 0.740836421660171 0.412482779223345 NA NA prediction 0.481672843320343 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449971 chr12:51449970 nonsynonymous SNV 0.147 3 20 hm7G_associated_SNPs_9075 0 0 1 0 2 LETMD1 chr12:51449927 3'AG 51449927 Downstream 44bp 8621 chr12 51449970 51449970 1 + T G KIRC 51449971 + 51449951 51449991 41 ATACATGATATCTTGGCTCTGAGAGAGTGTTTCTCTAACCA ATACATGATATCTTGGCTCGGAGAGAGTGTTTCTCTAACCA < 41bp 0.740836421660171 0.412482779223345 NA NA prediction 0.481672843320343 Functional Loss - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51449971 chr12:51449970 nonsynonymous SNV 0.147 3 20 hm7G_associated_SNPs_9075 0 0 1 0 2 LETMD1 chr12:51450028 5'GT 51450028 Upstream 59bp 8622 chr19 3527733 3527733 1 + T G LIHC 3527734 + 3527714 3527754 41 GACGACTTCTACCTCAATCTGGTGGACTGGTCGTCCCTCAA GACGACTTCTACCTCAATCGGGTGGACTGGTCGTCCCTCAA < 41bp 0.886446558838665 0.645632398463839 NA NA prediction 0.481628320749652 Functional Loss - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527734 chr19:3527733 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_9079 0 0 1 0 1 FZR1 chr19:3527812 5'GT 3527812 Upstream 80bp 8623 chr1 178489948 178489948 1 + T G STAD 178489949 + 178489929 178489969 41 GCTCTTCACAAGAAGACGATGGCACCACAAAAAACAAAACA GCTCTTCACAAGAAGACGAGGGCACCACAAAAAACAAAACA < 41bp 0.740806616765122 0.423189202565099 NA NA prediction 0.481613233530244 Functional Loss - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178489949 chr1:178489948 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_9080 0 0 0 0 1 TEX35 chr1:178490009 5'GT 178490009 Upstream 62bp 8624 chr2 148657389 148657389 1 + T G SKCM 148657390 + 148657370 148657410 41 TGGTGCCACTTATGTTAATTGCGGGGATTGTCATTTGTGCA TGGTGCCACTTATGTTAATGGCGGGGATTGTCATTTGTGCA < 41bp 0.740741812336674 0.414699127281561 NA NA prediction 0.481483624673348 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148657390 chr2:148657389 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9081 0 0 1 0 2 ACVR2A chr2:148657313 3'AG 148657313 Downstream 77bp 8625 chr2 148657389 148657389 1 + T G SKCM 148657390 + 148657370 148657410 41 TGGTGCCACTTATGTTAATTGCGGGGATTGTCATTTGTGCA TGGTGCCACTTATGTTAATGGCGGGGATTGTCATTTGTGCA < 41bp 0.740741812336674 0.414699127281561 NA NA prediction 0.481483624673348 Functional Loss - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148657390 chr2:148657389 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9081 0 0 1 0 2 ACVR2A chr2:148657467 5'GT 148657467 Upstream 79bp 8626 chr5 118861658 118861658 1 + T G COAD 118861659 + 118861639 118861679 41 TATGTACATTTGGATTTTCTGCCAGGCGTGTGTTACAGCAG TATGTACATTTGGATTTTCGGCCAGGCGTGTGTTACAGCAG < 41bp 0.877548228281526 0.636974857700542 NA NA prediction 0.481146741161968 Functional Loss - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861659 chr5:118861658 synonymous SNV . 0 20 hm7G_associated_SNPs_9085 0 0 1 0 2 HSD17B4 chr5:118861612 3'AG 118861612 Downstream 47bp 8627 chr5 118861658 118861658 1 + T G COAD 118861659 + 118861639 118861679 41 TATGTACATTTGGATTTTCTGCCAGGCGTGTGTTACAGCAG TATGTACATTTGGATTTTCGGCCAGGCGTGTGTTACAGCAG < 41bp 0.877548228281526 0.636974857700542 NA NA prediction 0.481146741161968 Functional Loss - HSD17B4 ENSG00000133835 CDS Human protein_coding chr5:118861659 chr5:118861658 synonymous SNV . 0 20 hm7G_associated_SNPs_9085 0 0 1 0 2 HSD17B4 chr5:118861718 5'GT 118861718 Upstream 61bp 8628 chr6 4031811 4031811 1 + T G SKCM 4031812 + 4031792 4031832 41 GGATGGAAGATGCTAATTCTGAAAAGAGTATAAATGAAGAA GGATGGAAGATGCTAATTCGGAAAAGAGTATAAATGAAGAA < 41bp 0.740548942113981 0.440067230240687 NA NA prediction 0.481097884227963 Functional Loss - PRPF4B ENSG00000112739 CDS Human protein_coding chr6:4031812 chr6:4031811 synonymous SNV . 0 20 hm7G_associated_SNPs_9086 0 0 1 0 1 PRPF4B chr6:4031793 3'AG 4031793 Downstream 19bp 8629 chr3 129188251 129188251 1 + T G OV 129188252 + 129188232 129188272 41 TTTCCTTCTACCAGCTGAGTGGAAAACAGGTATGTAGCCCT TTTCCTTCTACCAGCTGAGGGGAAAACAGGTATGTAGCCCT < 41bp 0.740484974318149 0.413099895856715 NA NA prediction 0.480969948636297 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129188252 chr3:129188251 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9088 0 0 1 0 2 IFT122 chr3:129188185 3'AG 129188185 Downstream 67bp 8630 chr3 129188251 129188251 1 + T G OV 129188252 + 129188232 129188272 41 TTTCCTTCTACCAGCTGAGTGGAAAACAGGTATGTAGCCCT TTTCCTTCTACCAGCTGAGGGGAAAACAGGTATGTAGCCCT < 41bp 0.740484974318149 0.413099895856715 NA NA prediction 0.480969948636297 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129188252 chr3:129188251 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9088 0 0 1 0 2 IFT122 chr3:129188260 5'GT 129188260 Upstream 10bp 8631 chrX 105876432 105876432 1 + T G SKCM 105876433 + 105876413 105876453 41 TCAGAACAACCATTTATAGTGGAACTGTTTTCAACATCGCA TCAGAACAACCATTTATAGGGGAACTGTTTTCAACATCGCA < 41bp 0.740385006114239 0.407368667590869 NA NA prediction 0.480770012228477 Functional Loss - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105876433 chrX:105876432 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_9092 0 0 0 0 2 CXorf57 chrX:105876360 3'AG 105876360 Downstream 73bp 8632 chrX 105876432 105876432 1 + T G SKCM 105876433 + 105876413 105876453 41 TCAGAACAACCATTTATAGTGGAACTGTTTTCAACATCGCA TCAGAACAACCATTTATAGGGGAACTGTTTTCAACATCGCA < 41bp 0.740385006114239 0.407368667590869 NA NA prediction 0.480770012228477 Functional Loss - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105876433 chrX:105876432 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_9092 0 0 0 0 2 CXorf57 chrX:105876482 5'GT 105876482 Upstream 51bp 8633 chr6 71566593 71566593 1 + T G STAD 71566594 + 71566574 71566614 41 GCACCAGCAGCTGCAACCCTGTCTACAGTAACATCTGGGGA GCACCAGCAGCTGCAACCCGGTCTACAGTAACATCTGGGGA < 41bp 0.74036312782673 0.410850484114001 NA NA prediction 0.480726255653459 Functional Loss - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71566594 chr6:71566593 nonsynonymous SNV 0.561 0 20 hm7G_associated_SNPs_9094 0 0 1 0 1 SMAP1 chr6:71566562 3'AG 71566562 Downstream 32bp 8634 chr6 12290873 12290873 1 + T G LIHC 12290874 + 12290854 12290894 41 TTTTTCAGAATGGATTATTTGCTCATGATTTTCTCTCTGCT TTTTTCAGAATGGATTATTGGCTCATGATTTTCTCTCTGCT < 41bp 0.795189686064083 0.554881455286996 NA NA prediction 0.480616461554175 Functional Loss - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12290874 chr6:12290873 nonsynonymous SNV 0.889 2 20 hm7G_associated_SNPs_9096 0 0 0 0 1 EDN1 chr6:12290926 5'GT 12290926 Upstream 54bp 8635 chr11 47299717 47299717 1 + T G SKCM 47299718 + 47299698 47299738 41 TCTTTATCATTTCCACAGCTGCTGTTGGCTCCAACCCCGTA TCTTTATCATTTCCACAGCGGCTGTTGGCTCCAACCCCGTA < 41bp 0.740256755292423 0.405800767657399 NA NA prediction 0.480513510584847 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47299718 chr11:47299717 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_9097 0 0 1 0 1 MADD chr11:47299716 3'AG 47299716 Downstream 2bp 8636 chr6 46108934 46108934 1 + T G BRCA 46108935 + 46108915 46108955 41 CCGATGAAGGCTGGACAATTGTGCTAAATGAATCATCACAA CCGATGAAGGCTGGACAATGGTGCTAAATGAATCATCACAA < 41bp 0.740111835889652 0.434660558631294 NA NA prediction 0.480223671779304 Functional Loss - ENPP4 ENSG00000001561 CDS Human protein_coding chr6:46108935 chr6:46108934 nonsynonymous SNV 0.794 2 20 hm7G_associated_SNPs_9100 0 0 1 0 1 ENPP4 chr6:46108959 5'GT 46108959 Upstream 26bp 8637 chr5 78964729 78964729 1 + T G rs10514164 78964730 + 78964710 78964750 41 GACAGGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTA GACAGGAGTCTTTTAGTCCGGCTATACAGCTGCACCTTGTA < 41bp 0.881466195133462 0.641362600700021 NA NA prediction 0.480207188866883 Functional Loss - PAPD4 ENSG00000164329 CDS Human protein_coding chr5:78964730 chr5:78964729 synonymous SNV . 0 20 hm7G_associated_SNPs_9101 0 0 1 0 1 PAPD4 chr5:78964715 3'AG 78964715 Downstream 15bp 8638 chr5 157181082 157181082 1 + T G PRAD 157181083 + 157181063 157181103 41 TATGAACGGGATTCTTCACTGACTCTCACTAGGGTAGGCAG TATGAACGGGATTCTTCACGGACTCTCACTAGGGTAGGCAG < 41bp 0.882408620323136 0.642333774022981 NA NA prediction 0.480149692600309 Functional Loss - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157181083 chr5:157181082 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_9102 0 0 1 0 1 LSM11 chr5:157181012 3'AG 157181012 Downstream 71bp 8639 chr1 109318982 109318982 1 + T G rs539693393 109318983 + 109318963 109319003 41 TAGATAATGCCAGTAAGCTTGCACAGCTTGTTGAAAAAAAG TAGATAATGCCAGTAAGCTGGCACAGCTTGTTGAAAAAAAG < 41bp 0.870999194560708 0.630938837192456 NA NA prediction 0.480120714736504 Functional Loss - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109318983 chr1:109318982 synonymous SNV . 0 20 hm7G_associated_SNPs_9103 0 0 1 0 2 STXBP3 chr1:109318955 3'AG 109318955 Downstream 28bp 8640 chr1 109318982 109318982 1 + T G rs539693393 109318983 + 109318963 109319003 41 TAGATAATGCCAGTAAGCTTGCACAGCTTGTTGAAAAAAAG TAGATAATGCCAGTAAGCTGGCACAGCTTGTTGAAAAAAAG < 41bp 0.870999194560708 0.630938837192456 NA NA prediction 0.480120714736504 Functional Loss - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109318983 chr1:109318982 synonymous SNV . 0 20 hm7G_associated_SNPs_9103 0 0 1 0 2 STXBP3 chr1:109319045 5'GT 109319045 Upstream 64bp 8641 chr4 186066971 186066971 1 + T G COAD 186066972 + 186066952 186066992 41 GCTGGATGATTGCCCAGAGTGTGACGGCAGTCGCAGGGCTG GCTGGATGATTGCCCAGAGGGTGACGGCAGTCGCAGGGCTG < 41bp 0.881618843326258 0.641685372143979 NA NA prediction 0.479866942364558 Functional Loss - SLC25A4 ENSG00000151729 CDS Human protein_coding chr4:186066972 chr4:186066971 nonsynonymous SNV 0.821 0 20 hm7G_associated_SNPs_9105 0 0 1 2 2 SLC25A4 chr4:186066913 3'AG 186066913 Downstream 59bp 8642 chr4 186066971 186066971 1 + T G COAD 186066972 + 186066952 186066992 41 GCTGGATGATTGCCCAGAGTGTGACGGCAGTCGCAGGGCTG GCTGGATGATTGCCCAGAGGGTGACGGCAGTCGCAGGGCTG < 41bp 0.881618843326258 0.641685372143979 NA NA prediction 0.479866942364558 Functional Loss - SLC25A4 ENSG00000151729 CDS Human protein_coding chr4:186066972 chr4:186066971 nonsynonymous SNV 0.821 0 20 hm7G_associated_SNPs_9105 0 0 1 2 2 SLC25A4 chr4:186067053 5'GT 186067053 Upstream 83bp 8643 chr2 48757318 48757318 1 + T G rs576764014 48757319 + 48757299 48757339 41 CTCCGCCTCCTGGTGTGGCTGGCTGCGGCCAGAATCGGAGC CTCCGCCTCCTGGTGTGGCGGGCTGCGGCCAGAATCGGAGC < 41bp 0.739898760745662 0.417427318385663 NA NA prediction 0.479797521491323 Functional Loss - STON1 ENSG00000243244 UTR5 Human protein_coding chr2:48757319 chr2:48757318 . . 0 20 hm7G_associated_SNPs_9106 0 0 0 0 1 STON1 chr2:48757355 5'GT 48757355 Upstream 38bp 8644 chr5 96103616 96103616 1 + T G rs79522948 96103617 + 96103597 96103637 41 TACTCATATCTCAGAAACCTGCAGATGACCAAGACCCCATT TACTCATATCTCAGAAACCGGCAGATGACCAAGACCCCATT < 41bp 0.816307958181483 0.576546043019416 NA NA prediction 0.479523830324134 Functional Loss - CAST ENSG00000153113 CDS Human protein_coding chr5:96103617 chr5:96103616 synonymous SNV . 0 20 hm7G_associated_SNPs_9109 0 0 1 0 1 CAST chr5:96103611 3'AG 96103611 Downstream 6bp 8645 chr1 204513770 204513770 1 + T G BRCA 204513771 + 204513751 204513791 41 AAGTTGAAGCTGCTGATACTGAACAAACAAGTGAAGAAGTA AAGTTGAAGCTGCTGATACGGAACAAACAAGTGAAGAAGTA < 41bp 0.739687319990559 0.425806988293857 NA NA prediction 0.479374639981118 Functional Loss - MDM4 ENSG00000198625 CDS Human protein_coding chr1:204513771 chr1:204513770 synonymous SNV . 0 20 hm7G_associated_SNPs_9112 0 0 1 0 1 MDM4 chr1:204513812 5'GT 204513812 Upstream 43bp 8646 chr3 129196976 129196976 1 + T G BLCA 129196977 + 129196957 129196997 41 TCAGAGGACTTATCAGACATGCATTACCGGGTAAAGGAGAA TCAGAGGACTTATCAGACAGGCATTACCGGGTAAAGGAGAA < 41bp 0.874748184478732 0.635066204084444 NA NA prediction 0.479363960788577 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129196977 chr3:129196976 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9113 0 0 1 0 1 IFT122 chr3:129197061 5'GT 129197061 Upstream 86bp 8647 chr7 45108124 45108124 1 + T G SKCM 45108125 + 45108105 45108145 41 CAGGCTCCCTGTCGGAGAGTGCAGTTGGGCCCGTGGAGGCA CAGGCTCCCTGTCGGAGAGGGCAGTTGGGCCCGTGGAGGCA < 41bp 0.893851965012702 0.654267571584461 NA NA prediction 0.479168786856481 Functional Loss - CCM2 ENSG00000136280 CDS Human protein_coding chr7:45108125 chr7:45108124 nonsynonymous SNV 0.955 2 20 hm7G_associated_SNPs_9115 0 0 0 0 2 CCM2 chr7:45108042 3'AG 45108042 Downstream 83bp 8648 chr7 45108124 45108124 1 + T G SKCM 45108125 + 45108105 45108145 41 CAGGCTCCCTGTCGGAGAGTGCAGTTGGGCCCGTGGAGGCA CAGGCTCCCTGTCGGAGAGGGCAGTTGGGCCCGTGGAGGCA < 41bp 0.893851965012702 0.654267571584461 NA NA prediction 0.479168786856481 Functional Loss - CCM2 ENSG00000136280 CDS Human protein_coding chr7:45108125 chr7:45108124 nonsynonymous SNV 0.955 2 20 hm7G_associated_SNPs_9115 0 0 0 0 2 CCM2 chr7:45108178 5'GT 45108178 Upstream 55bp 8649 chr1 203097932 203097932 1 + T G rs201792430 203097933 + 203097913 203097953 41 GTGCTTGCCTCGTGCCCCTTGGTGCCCGTCTGCTGATGTGC GTGCTTGCCTCGTGCCCCTGGGTGCCCGTCTGCTGATGTGC < 41bp 0.752372526360007 0.513007600355765 NA NA prediction 0.478729852008484 Functional Loss - ADORA1 ENSG00000163485 UTR5 Human protein_coding chr1:203097933 chr1:203097932 . . 0 20 hm7G_associated_SNPs_9117 0 0 0 0 1 ADORA1 chr1:203097913 3'AG 203097913 Downstream 20bp 8650 chr16 30001110 30001110 1 + T G SKCM 30001111 + 30001091 30001131 41 GACCAGTCCATCTCAGAGATGCTCAGCTCACAGGCGGTGAG GACCAGTCCATCTCAGAGAGGCTCAGCTCACAGGCGGTGAG < 41bp 0.739316470554081 0.411548543462368 NA NA prediction 0.478632941108163 Functional Loss - TAOK2 ENSG00000149930 CDS Human protein_coding chr16:30001111 chr16:30001110 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9120 0 0 1 0 1 TAOK2 chr16:30001126 5'GT 30001126 Upstream 17bp 8651 chr18 13737060 13737060 1 + T G HNSC 13737061 + 13737041 13737081 41 AAACGTGATATCACTGTTTTGGACCTGGGATGTGGTAAAGG AAACGTGATATCACTGTTTGGGACCTGGGATGTGGTAAAGG < 41bp 0.883305687963707 0.644004966710303 NA NA prediction 0.478601442506808 Functional Loss - RNMT ENSG00000101654 CDS Human protein_coding chr18:13737061 chr18:13737060 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9121 0 0 1 0 2 RNMT chr18:13737009 3'AG 13737009 Downstream 52bp 8652 chr18 13737060 13737060 1 + T G HNSC 13737061 + 13737041 13737081 41 AAACGTGATATCACTGTTTTGGACCTGGGATGTGGTAAAGG AAACGTGATATCACTGTTTGGGACCTGGGATGTGGTAAAGG < 41bp 0.883305687963707 0.644004966710303 NA NA prediction 0.478601442506808 Functional Loss - RNMT ENSG00000101654 CDS Human protein_coding chr18:13737061 chr18:13737060 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9121 0 0 1 0 2 RNMT chr18:13737134 5'GT 13737134 Upstream 75bp 8653 chr1 110203877 110203877 1 + T G rs546616716 110203878 + 110203858 110203898 41 TGTCTGGGGCAACAAGTAATGCCTTGAAGGCCAGGAGGTGG TGTCTGGGGCAACAAGTAAGGCCTTGAAGGCCAGGAGGTGG < 41bp 0.861260709355165 0.621965023061942 NA NA prediction 0.478591372586446 Functional Loss - GSTM4 ENSG00000168765 UTR3 Human protein_coding chr1:110203878 chr1:110203877 . . 0 20 hm7G_associated_SNPs_9122 0 0 1 0 1 GSTM4 chr1:110203787 3'AG 110203787 Downstream 91bp 8654 chr7 72410438 72410438 1 + T G COAD 72410439 + 72410419 72410459 41 CGAATTCTCAGTCTACACCTGGCAGCTCTGGGCAGCGTAAG CGAATTCTCAGTCTACACCGGGCAGCTCTGGGCAGCGTAAG < 41bp 0.739192528735793 0.385573566391372 NA NA prediction 0.478385057471586 Functional Loss - POM121 ENSG00000196313 CDS Human protein_coding chr7:72410439 chr7:72410438 synonymous SNV . 0 20 hm7G_associated_SNPs_9124 0 0 0 0 2 POM121 chr7:72410386 3'AG 72410386 Downstream 53bp 8655 chr7 72410438 72410438 1 + T G COAD 72410439 + 72410419 72410459 41 CGAATTCTCAGTCTACACCTGGCAGCTCTGGGCAGCGTAAG CGAATTCTCAGTCTACACCGGGCAGCTCTGGGCAGCGTAAG < 41bp 0.739192528735793 0.385573566391372 NA NA prediction 0.478385057471586 Functional Loss - POM121 ENSG00000196313 CDS Human protein_coding chr7:72410439 chr7:72410438 synonymous SNV . 0 20 hm7G_associated_SNPs_9124 0 0 0 0 2 POM121 chr7:72410507 5'GT 72410507 Upstream 70bp 8656 chr2 207827337 207827337 1 + T G UCEC 207827338 + 207827318 207827358 41 TCAAGTAACCACCCAGAAATGGTGAGTCCATAGCACCAAGG TCAAGTAACCACCCAGAAAGGGTGAGTCCATAGCACCAAGG < 41bp 0.870259744086605 0.631254524348801 NA NA prediction 0.478010439475608 Functional Loss - CPO ENSG00000144410 CDS Human protein_coding chr2:207827338 chr2:207827337 nonsynonymous SNV 0.032 2 20 hm7G_associated_SNPs_9126 0 0 0 0 1 CPO chr2:207827338 5'GT 207827338 Upstream 2bp 8657 chr18 47101749 47101749 1 + T G STAD 47101750 + 47101730 47101770 41 CTGCTGCAGGTTTGGATCCTGCCGGGCCCATGTTTGAAGGG CTGCTGCAGGTTTGGATCCGGCCGGGCCCATGTTTGAAGGG < 41bp 0.738965297383219 0.400200478024541 NA NA prediction 0.477930594766437 Functional Loss - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101750 chr18:47101749 synonymous SNV . 0 20 hm7G_associated_SNPs_9127 0 0 0 0 1 LIPG chr18:47101739 3'AG 47101739 Downstream 11bp 8658 chr8 21953890 21953890 1 + T G COAD 21953891 + 21953871 21953911 41 ACAGACATTCCCTGGCGGCTGAAGCAGATGCTGGATATCCT ACAGACATTCCCTGGCGGCGGAAGCAGATGCTGGATATCCT < 41bp 0.88759333812353 0.648724279233518 NA NA prediction 0.477738117780024 Functional Loss - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21953891 chr8:21953890 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9128 0 0 1 1 1 FAM160B2 chr8:21953848 3'AG 21953848 Downstream 43bp 8659 chr8 38854635 38854635 1 + T G STAD 38854636 + 38854616 38854656 41 CTTCGTGTCCGGTGGTTGCTGTTGCTTGGCCTGGTGGGCCC CTTCGTGTCCGGTGGTTGCGGTTGCTTGGCCTGGTGGGCCC < 41bp 0.73879785674602 0.424759421130229 NA NA prediction 0.47759571349204 Functional Loss - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38854636 chr8:38854635 nonsynonymous SNV 0.134 3 20 hm7G_associated_SNPs_9131 0 0 1 0 1 ADAM9 chr8:38854679 5'GT 38854679 Upstream 45bp 8660 chr2 27499607 27499607 1 + T G rs17005979 27499608 + 27499588 27499628 41 GCTCAGATCATGTCTACTGTGAAGGAAGCAGCACACCGGCT GCTCAGATCATGTCTACTGGGAAGGAAGCAGCACACCGGCT < 41bp 0.874432928208438 0.635635928754888 NA NA prediction 0.477593998907101 Functional Loss - DNAJC5G ENSG00000163793 CDS Human protein_coding chr2:27499608 chr2:27499607 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_9132 0 0 0 0 1 DNAJC5G chr2:27499594 3'AG 27499594 Downstream 14bp 8661 chr1 2333609 2333609 1 + T G rs530210678 2333610 + 2333590 2333630 41 GCAGGTGCCCGGTGCTGGCTGCAGATGCGGCGCTAACCTTC GCAGGTGCCCGGTGCTGGCGGCAGATGCGGCGCTAACCTTC < 41bp 0.889368440338464 0.650830314653974 NA NA prediction 0.477076251368981 Functional Loss - RER1 ENSG00000157916 CDS Human protein_coding chr1:2333610 chr1:2333609 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_9136 0 0 1 0 1 RER1 chr1:2333536 3'AG 2333536 Downstream 74bp 8662 chr17 25628924 25628924 1 + T G SKCM 25628925 + 25628905 25628945 41 AGATGGTTCATACTTTGCTTGGTCACAAGGACATCGCACAG AGATGGTTCATACTTTGCTGGGTCACAAGGACATCGCACAG < 41bp 0.878093701929649 0.639602902600025 NA NA prediction 0.476981598659248 Functional Loss - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25628925 chr17:25628924 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_9137 0 0 1 0 2 WSB1 chr17:25628907 3'AG 25628907 Downstream 18bp 8663 chr17 25628924 25628924 1 + T G SKCM 25628925 + 25628905 25628945 41 AGATGGTTCATACTTTGCTTGGTCACAAGGACATCGCACAG AGATGGTTCATACTTTGCTGGGTCACAAGGACATCGCACAG < 41bp 0.878093701929649 0.639602902600025 NA NA prediction 0.476981598659248 Functional Loss - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25628925 chr17:25628924 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_9137 0 0 1 0 2 WSB1 chr17:25628982 5'GT 25628982 Upstream 59bp 8664 chr4 110862242 110862242 1 + T G HNSC 110862243 + 110862223 110862263 41 TAATGAGAAAAGAATCTATTGGGTGGATTTAGAAAGACAAC TAATGAGAAAAGAATCTATGGGGTGGATTTAGAAAGACAAC < 41bp 0.738400493971518 0.405738564803813 NA NA prediction 0.476800987943036 Functional Loss - EGF ENSG00000138798 CDS Human protein_coding chr4:110862243 chr4:110862242 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_9138 0 0 0 0 1 EGF chr4:110862301 5'GT 110862301 Upstream 60bp 8665 chr20 31885389 31885389 1 + T G UCEC 31885390 + 31885370 31885410 41 GCAGACCTCCTGCAGCTGGTGAAGGGTAGGTGCTCTGCTCT GCAGACCTCCTGCAGCTGGGGAAGGGTAGGTGCTCTGCTCT < 41bp 0.738341258649366 0.408356890437639 NA NA prediction 0.476682517298732 Functional Loss - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31885390 chr20:31885389 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_9140 0 0 0 0 1 BPIFB1 chr20:31885331 3'AG 31885331 Downstream 59bp 8666 chr15 89195456 89195456 1 + T G STAD 89195457 + 89195437 89195477 41 GACACGTCCACTGACAGGCTGTTGTGGCGTGAGGCCAAGCT GACACGTCCACTGACAGGCGGTTGTGGCGTGAGGCCAAGCT < 41bp 0.871849508718397 0.633567859360554 NA NA prediction 0.476563298715686 Functional Loss - ISG20 ENSG00000172183 CDS Human protein_coding chr15:89195457 chr15:89195456 nonsynonymous SNV 0.583 0 20 hm7G_associated_SNPs_9141 0 0 0 0 1 ISG20 chr15:89195541 5'GT 89195541 Upstream 86bp 8667 chr4 169049278 169049278 1 + T G STAD 169049279 + 169049259 169049299 41 CCCAATTTCAATCCCATAATGGATGCCCAAATGCTAGGAGG CCCAATTTCAATCCCATAAGGGATGCCCAAATGCTAGGAGG < 41bp 0.881679952918914 0.643450210858859 NA NA prediction 0.476459484120109 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169049279 chr4:169049278 nonsynonymous SNV 0.953 1 20 hm7G_associated_SNPs_9143 0 0 0 0 2 ANXA10 chr4:169049235 3'AG 169049235 Downstream 44bp 8668 chr4 169049278 169049278 1 + T G STAD 169049279 + 169049259 169049299 41 CCCAATTTCAATCCCATAATGGATGCCCAAATGCTAGGAGG CCCAATTTCAATCCCATAAGGGATGCCCAAATGCTAGGAGG < 41bp 0.881679952918914 0.643450210858859 NA NA prediction 0.476459484120109 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169049279 chr4:169049278 nonsynonymous SNV 0.953 1 20 hm7G_associated_SNPs_9143 0 0 0 0 2 ANXA10 chr4:169049316 5'GT 169049316 Upstream 39bp 8669 chr10 89474521 89474521 1 + T G COAD 89474522 + 89474502 89474542 41 GATTTACAGGTATTGATTCTGATTATGAGAAACCTGAAACT GATTTACAGGTATTGATTCGGATTATGAGAAACCTGAAACT < 41bp 0.876361708556116 0.638133827149947 NA NA prediction 0.476455762812339 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474522 chr10:89474521 synonymous SNV . 0 20 hm7G_associated_SNPs_9144 0 0 1 2 2 PAPSS2 chr10:89474502 3'AG 89474502 Downstream 20bp 8670 chr10 89474521 89474521 1 + T G COAD 89474522 + 89474502 89474542 41 GATTTACAGGTATTGATTCTGATTATGAGAAACCTGAAACT GATTTACAGGTATTGATTCGGATTATGAGAAACCTGAAACT < 41bp 0.876361708556116 0.638133827149947 NA NA prediction 0.476455762812339 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89474522 chr10:89474521 synonymous SNV . 0 20 hm7G_associated_SNPs_9144 0 0 1 2 2 PAPSS2 chr10:89474620 5'GT 89474620 Upstream 100bp 8671 chr7 80300449 80300449 1 + T G rs3211938 80300450 + 80300430 80300470 41 CAAAAAATTGTACATCATATGGTGTGCTAGACATCAGCAAA CAAAAAATTGTACATCATAGGGTGTGCTAGACATCAGCAAA < 41bp 0.738215448389636 0.427075093325798 NA NA prediction 0.476430896779272 Functional Loss - CD36 ENSG00000135218 CDS Human protein_coding chr7:80300450 chr7:80300449 stopgain 0.940 1 20 hm7G_associated_SNPs_9145 2 1 0 0 1 CD36 chr7:80300480 5'GT 80300480 Upstream 32bp 8672 chr16 511436 511436 1 + T G rs137963733 511437 + 511417 511457 41 CTAAGTACTTGGATCCCAGTGGGCTCGGCGTGATCAGCTTT CTAAGTACTTGGATCCCAGGGGGCTCGGCGTGATCAGCTTT < 41bp 0.738100369632102 0.380457665199749 NA NA prediction 0.476200739264203 Functional Loss - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:511437 chr16:511436 nonsynonymous SNV 0.887 1 20 hm7G_associated_SNPs_9148 0 0 1 0 2 RAB11FIP3 chr16:511404 3'AG 511404 Downstream 33bp 8673 chr16 511436 511436 1 + T G rs137963733 511437 + 511417 511457 41 CTAAGTACTTGGATCCCAGTGGGCTCGGCGTGATCAGCTTT CTAAGTACTTGGATCCCAGGGGGCTCGGCGTGATCAGCTTT < 41bp 0.738100369632102 0.380457665199749 NA NA prediction 0.476200739264203 Functional Loss - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:511437 chr16:511436 nonsynonymous SNV 0.887 1 20 hm7G_associated_SNPs_9148 0 0 1 0 2 RAB11FIP3 chr16:511497 5'GT 511497 Upstream 62bp 8674 chr8 9623815 9623815 1 + T G SKCM 9623816 + 9623796 9623836 41 CATGCATACATAGGAGGAATGTTTGGGGCCGGGATTTATTT CATGCATACATAGGAGGAAGGTTTGGGGCCGGGATTTATTT < 41bp 0.738072241656386 0.422252958898315 NA NA prediction 0.476144483312771 Functional Loss - TNKS ENSG00000173273 CDS Human protein_coding chr8:9623816 chr8:9623815 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9149 0 0 1 0 1 TNKS chr8:9623749 3'AG 9623749 Downstream 67bp 8675 chr12 96348692 96348692 1 + T G SKCM 96348693 + 96348673 96348713 41 GATTTATTGATTATAGGTTTGGTGGATGCACACACACATCC GATTTATTGATTATAGGTTGGGTGGATGCACACACACATCC < 41bp 0.872198696403983 0.634218592382437 NA NA prediction 0.475960208043093 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96348693 chr12:96348692 nonsynonymous SNV 0.907 4 20 hm7G_associated_SNPs_9151 0 0 0 0 2 AMDHD1 chr12:96348689 3'AG 96348689 Downstream 4bp 8676 chr12 96348692 96348692 1 + T G SKCM 96348693 + 96348673 96348713 41 GATTTATTGATTATAGGTTTGGTGGATGCACACACACATCC GATTTATTGATTATAGGTTGGGTGGATGCACACACACATCC < 41bp 0.872198696403983 0.634218592382437 NA NA prediction 0.475960208043093 Functional Loss - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96348693 chr12:96348692 nonsynonymous SNV 0.907 4 20 hm7G_associated_SNPs_9151 0 0 0 0 2 AMDHD1 chr12:96348753 5'GT 96348753 Upstream 62bp 8677 chr17 73089697 73089697 1 + T G BLCA 73089698 + 73089678 73089718 41 CCCCAGGCAGCAGCCACATTGGCAGTGAGGCCGTGGCAGCG CCCCAGGCAGCAGCCACATGGGCAGTGAGGCCGTGGCAGCG < 41bp 0.737876790483904 0.494713411870248 NA NA prediction 0.475753580967808 Functional Loss - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73089698 chr17:73089697 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_9152 0 0 0 0 1 SLC16A5 chr17:73089684 3'AG 73089684 Downstream 14bp 8678 chr3 178942491 178942491 1 + T G rs116164892 178942492 + 178942472 178942512 41 TTTAACTATTTTAAAGGCTTGAAGAGTGTCGAATTATGTCC TTTAACTATTTTAAAGGCTGGAAGAGTGTCGAATTATGTCC < 41bp 0.865766592986772 0.627907853133824 NA NA prediction 0.475717479705895 Functional Loss - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178942492 chr3:178942491 synonymous SNV . 0 20 hm7G_associated_SNPs_9154 1 0 0 0 1 PIK3CA chr3:178942488 3'AG 178942488 Downstream 4bp 8679 chr10 74879892 74879892 1 + T G STAD 74879893 + 74879873 74879913 41 ACTTCAGCACATCAATACCTGGCCCCCCGGCACAGCCTGTT ACTTCAGCACATCAATACCGGGCCCCCCGGCACAGCCTGTT < 41bp 0.829557805326877 0.591703830814393 NA NA prediction 0.475707949024966 Functional Loss - NUDT13 ENSG00000166321 CDS Human protein_coding chr10:74879893 chr10:74879892 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_9155 0 0 0 0 1 NUDT13 chr10:74879915 5'GT 74879915 Upstream 24bp 8680 chr3 1424781 1424781 1 + T G STAD 1424782 + 1424762 1424802 41 TCATCCCACTGTCTCCCTTTGAAGTCAAAGTGGGTGTGTAT TCATCCCACTGTCTCCCTTGGAAGTCAAAGTGGGTGTGTAT < 41bp 0.737750421298702 0.413733179272267 NA NA prediction 0.475500842597405 Functional Loss - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1424782 chr3:1424781 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9158 0 0 0 0 1 CNTN6 chr3:1424860 5'GT 1424860 Upstream 80bp 8681 chr19 55805594 55805594 1 + T G STAD 55805595 + 55805575 55805615 41 CCCTCAGGTCCCCCCATTATGCGTGTCCAGAGGTGATTAAG CCCTCAGGTCCCCCCATTAGGCGTGTCCAGAGGTGATTAAG < 41bp 0.737699458073139 0.386729325414746 NA NA prediction 0.475398916146277 Functional Loss - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55805595 chr19:55805594 stopgain 0.992 1 20 hm7G_associated_SNPs_9160 0 0 1 0 2 BRSK1 chr19:55805582 3'AG 55805582 Downstream 13bp 8682 chr19 55805594 55805594 1 + T G STAD 55805595 + 55805575 55805615 41 CCCTCAGGTCCCCCCATTATGCGTGTCCAGAGGTGATTAAG CCCTCAGGTCCCCCCATTAGGCGTGTCCAGAGGTGATTAAG < 41bp 0.737699458073139 0.386729325414746 NA NA prediction 0.475398916146277 Functional Loss - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55805595 chr19:55805594 stopgain 0.992 1 20 hm7G_associated_SNPs_9160 0 0 1 0 2 BRSK1 chr19:55805615 5'GT 55805615 Upstream 22bp 8683 chr10 70661146 70661146 1 + T G UCEC 70661147 + 70661127 70661167 41 GGCGGTGGCCAGTAATGCCTGGGAAACTCCTCTGGGGGGAC GGCGGTGGCCAGTAATGCCGGGGAAACTCCTCTGGGGGGAC < 41bp 0.872240197448659 0.634545676077248 NA NA prediction 0.475389042742824 Functional Loss - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70661147 chr10:70661146 synonymous SNV . 0 20 hm7G_associated_SNPs_9161 0 0 1 0 1 DDX50 chr10:70661227 5'GT 70661227 Upstream 82bp 8684 chr4 47563058 47563058 1 + T G GBM 47563059 + 47563039 47563079 41 AAGAATTACTACTTGAATCTGCCATGAGGTTGGAGAACAAA AAGAATTACTACTTGAATCGGCCATGAGGTTGGAGAACAAA < 41bp 0.875782207767271 0.638132629370545 NA NA prediction 0.475299156793451 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47563059 chr4:47563058 synonymous SNV . 0 20 hm7G_associated_SNPs_9163 0 0 0 0 2 ATP10D chr4:47562966 3'AG 47562966 Downstream 93bp 8685 chr4 47563058 47563058 1 + T G GBM 47563059 + 47563039 47563079 41 AAGAATTACTACTTGAATCTGCCATGAGGTTGGAGAACAAA AAGAATTACTACTTGAATCGGCCATGAGGTTGGAGAACAAA < 41bp 0.875782207767271 0.638132629370545 NA NA prediction 0.475299156793451 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47563059 chr4:47563058 synonymous SNV . 0 20 hm7G_associated_SNPs_9163 0 0 0 0 2 ATP10D chr4:47563092 5'GT 47563092 Upstream 35bp 8686 chr1 167992241 167992241 1 + T G SKCM 167992242 + 167992222 167992262 41 TCAGATTCTCCTTCTTCTGTGGTTAACAAACAGCTCGGATC TCAGATTCTCCTTCTTCTGGGGTTAACAAACAGCTCGGATC < 41bp 0.737639800904087 0.407033672871277 NA NA prediction 0.475279601808175 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:167992242 chr1:167992241 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9164 0 0 1 0 1 DCAF6 chr1:167992226 3'AG 167992226 Downstream 16bp 8687 chr2 64685453 64685453 1 + T G UCS 64685454 + 64685434 64685474 41 GAGCACCCACGTTTCCGAGTGTTTGTGGATGGACACCAACT GAGCACCCACGTTTCCGAGGGTTTGTGGATGGACACCAACT < 41bp 0.844267274454178 0.606631602136623 NA NA prediction 0.475271344635111 Functional Loss - LGALSL ENSG00000119862 CDS Human protein_coding chr2:64685454 chr2:64685453 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_9165 0 0 1 0 1 LGALSL chr2:64685419 3'AG 64685419 Downstream 35bp 8688 chr2 220470455 220470455 1 + T G rs201253890 220470456 + 220470436 220470476 41 ATGAGCTTCGGAGCCTGCATGGTGAGTGGGGGTGTGTGATG ATGAGCTTCGGAGCCTGCAGGGTGAGTGGGGGTGTGTGATG < 41bp 0.89277846353714 0.655227420692487 NA NA prediction 0.475102085689306 Functional Loss - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220470456 chr2:220470455 nonsynonymous SNV 0.350 0 20 hm7G_associated_SNPs_9166 0 0 1 0 1 STK11IP chr2:220470456 5'GT 220470456 Upstream 2bp 8689 chr5 128324345 128324345 1 + T G LUAD 128324346 + 128324326 128324366 41 AGGTTTTAAGGGGTTCTGCTGTCCTGTGGGCTTTTGGTTGT AGGTTTTAAGGGGTTCTGCGGTCCTGTGGGCTTTTGGTTGT < 41bp 0.737547554508807 0.408731600347846 NA NA prediction 0.475095109017614 Functional Loss - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128324346 chr5:128324345 synonymous SNV . 0 20 hm7G_associated_SNPs_9167 0 0 0 0 1 SLC27A6 chr5:128324293 3'AG 128324293 Downstream 53bp 8690 chr3 37042541 37042541 1 + T G rs4647220 37042542 + 37042522 37042562 41 CTACCTATGGCTTTCGAGGTGAGGTAAGCTAAAGATTCAAG CTACCTATGGCTTTCGAGGGGAGGTAAGCTAAAGATTCAAG < 41bp 0.737538079978367 0.45311759525709 NA NA prediction 0.475076159956734 Functional Loss - MLH1;MLH1 ENSG00000076242;ENSG00000076242 exonic;splicing Human protein_coding chr3:37042542 chr3:37042541 synonymous SNV 1.000 0 20 hm7G_associated_SNPs_9168 3 0 1 0 2 MLH1 chr3:37042446 3'AG 37042446 Downstream 96bp 8691 chr3 37042541 37042541 1 + T G rs4647220 37042542 + 37042522 37042562 41 CTACCTATGGCTTTCGAGGTGAGGTAAGCTAAAGATTCAAG CTACCTATGGCTTTCGAGGGGAGGTAAGCTAAAGATTCAAG < 41bp 0.737538079978367 0.45311759525709 NA NA prediction 0.475076159956734 Functional Loss - MLH1;MLH1 ENSG00000076242;ENSG00000076242 exonic;splicing Human protein_coding chr3:37042542 chr3:37042541 synonymous SNV 1.000 0 20 hm7G_associated_SNPs_9168 3 0 1 0 2 MLH1 chr3:37042544 5'GT 37042544 Upstream 4bp 8692 chr8 124440236 124440236 1 + T G LUAD 124440237 + 124440217 124440257 41 CTTTAGAAGAATGTTATGCTGTCTTCATATCTAATGAGAGG CTTTAGAAGAATGTTATGCGGTCTTCATATCTAATGAGAGG < 41bp 0.737528019598029 0.417570555607606 NA NA prediction 0.475056039196059 Functional Loss - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124440237 chr8:124440236 synonymous SNV . 0 20 hm7G_associated_SNPs_9169 0 0 1 0 2 WDYHV1 chr8:124440164 3'AG 124440164 Downstream 73bp 8693 chr8 124440236 124440236 1 + T G LUAD 124440237 + 124440217 124440257 41 CTTTAGAAGAATGTTATGCTGTCTTCATATCTAATGAGAGG CTTTAGAAGAATGTTATGCGGTCTTCATATCTAATGAGAGG < 41bp 0.737528019598029 0.417570555607606 NA NA prediction 0.475056039196059 Functional Loss - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124440237 chr8:124440236 synonymous SNV . 0 20 hm7G_associated_SNPs_9169 0 0 1 0 2 WDYHV1 chr8:124440263 5'GT 124440263 Upstream 28bp 8694 chrX 54585084 54585084 1 + T G UCEC 54585085 + 54585065 54585105 41 AGAAGAAGATGCAGAAACGTGCAGGTGGGAGCCCCAGACCA AGAAGAAGATGCAGAAACGGGCAGGTGGGAGCCCCAGACCA < 41bp 0.887470059997494 0.649979572789977 NA NA prediction 0.474980974415033 Functional Loss - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54585085 chrX:54585084 synonymous SNV . 0 20 hm7G_associated_SNPs_9171 0 0 1 0 1 GNL3L chrX:54585088 5'GT 54585088 Upstream 5bp 8695 chr1 12853426 12853426 1 + T G LUSC 12853427 + 12853407 12853447 41 GAGCTGGCAGGGCAGAGCCTGCTGAGAGACCAGGCCTTGTC GAGCTGGCAGGGCAGAGCCGGCTGAGAGACCAGGCCTTGTC < 41bp 0.878345999483717 0.640913818206872 NA NA prediction 0.474864362553691 Functional Loss - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12853427 chr1:12853426 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_9173 0 0 0 0 1 PRAMEF1 chr1:12853352 3'AG 12853352 Downstream 75bp 8696 chr9 133750315 133750315 1 + T G KIRP 133750316 + 133750296 133750336 41 TGGTGAAGGTAGCTGATTTTGGCCTGAGCAGGTTGATGACA TGGTGAAGGTAGCTGATTTGGGCCTGAGCAGGTTGATGACA < 41bp 0.737424406311596 0.38190118837565 NA NA prediction 0.474848812623192 Functional Loss - ABL1 ENSG00000097007 CDS Human protein_coding chr9:133750316 chr9:133750315 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_9174 0 0 1 0 1 ABL1 chr9:133750255 3'AG 133750255 Downstream 61bp 8697 chr3 184298848 184298848 1 + T G LIHC 184298849 + 184298829 184298869 41 CTCATGCTGGACTGCTGGGTGCGGGACCGGAACCTCAGGCC CTCATGCTGGACTGCTGGGGGCGGGACCGGAACCTCAGGCC < 41bp 0.892417393697348 0.654999565823789 NA NA prediction 0.474835655747118 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184298849 chr3:184298848 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9175 0 0 0 0 1 EPHB3 chr3:184298760 3'AG 184298760 Downstream 89bp 8698 chr1 150432716 150432716 1 + T G LUAD 150432717 + 150432697 150432737 41 CCTTCCCCAGCATTGGCTTTGCCAAACCTGGCTAATGTGGA CCTTCCCCAGCATTGGCTTGGCCAAACCTGGCTAATGTGGA < 41bp 0.737406033616102 0.388784553518205 NA NA prediction 0.474812067232204 Functional Loss - RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150432717 chr1:150432716 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_9176 0 0 1 0 1 RPRD2 chr1:150432793 5'GT 150432793 Upstream 78bp 8699 chr1 1223377 1223377 1 + T G rs574988244 1223378 + 1223358 1223398 41 ACCGCCGGCGGGGAAGGCGTGGAGGTGGAGCTGCTACACAA ACCGCCGGCGGGGAAGGCGGGGAGGTGGAGCTGCTACACAA < 41bp 0.882945012365181 0.645559893446981 NA NA prediction 0.4747702378364 Functional Loss - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1223378 chr1:1223377 nonsynonymous SNV 0.035 3 20 hm7G_associated_SNPs_9177 0 0 1 0 2 SCNN1D chr1:1223319 3'AG 1223319 Downstream 59bp 8700 chr1 1223377 1223377 1 + T G rs574988244 1223378 + 1223358 1223398 41 ACCGCCGGCGGGGAAGGCGTGGAGGTGGAGCTGCTACACAA ACCGCCGGCGGGGAAGGCGGGGAGGTGGAGCTGCTACACAA < 41bp 0.882945012365181 0.645559893446981 NA NA prediction 0.4747702378364 Functional Loss - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1223378 chr1:1223377 nonsynonymous SNV 0.035 3 20 hm7G_associated_SNPs_9177 0 0 1 0 2 SCNN1D chr1:1223417 5'GT 1223417 Upstream 41bp 8701 chr2 27351917 27351917 1 + T G PRAD 27351918 + 27351898 27351938 41 ACCCAGCCCATTGTGCTGCTGCTTCCTGGCATCACTGGCAG ACCCAGCCCATTGTGCTGCGGCTTCCTGGCATCACTGGCAG < 41bp 0.898093611794003 0.660710197689824 NA NA prediction 0.474766828208358 Functional Loss - ABHD1 ENSG00000143994 CDS Human protein_coding chr2:27351918 chr2:27351917 nonsynonymous SNV 0.197 3 20 hm7G_associated_SNPs_9178 0 0 0 6 1 ABHD1 chr2:27351995 5'GT 27351995 Upstream 79bp 8702 chr8 11295972 11295972 1 + T G rs146314212 11295973 + 11295953 11295993 41 ATGCTACAGAAGTACAAGGTGAAGAATGCATACCGATTACA ATGCTACAGAAGTACAAGGGGAAGAATGCATACCGATTACA < 41bp 0.737370296414265 0.429739078132564 NA NA prediction 0.47474059282853 Functional Loss - FAM167A-AS1 ENSG00000184608 CDS Human antisense chr8:11295973 chr8:11295972 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_9179 0 0 0 0 1 FAM167A-AS1 chr8:11295945 3'AG 11295945 Downstream 28bp 8703 chr3 39126162 39126162 1 + T G PAAD 39126163 + 39126143 39126183 41 CTATTACTTTGGATGAAAGTGATTGTTTTGCTGCCTGGGTT CTATTACTTTGGATGAAAGGGATTGTTTTGCTGCCTGGGTT < 41bp 0.737300310954021 0.411963679021004 NA NA prediction 0.474600621908041 Functional Loss - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39126163 chr3:39126162 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9180 0 0 1 0 2 WDR48 chr3:39126136 3'AG 39126136 Downstream 27bp 8704 chr3 39126162 39126162 1 + T G PAAD 39126163 + 39126143 39126183 41 CTATTACTTTGGATGAAAGTGATTGTTTTGCTGCCTGGGTT CTATTACTTTGGATGAAAGGGATTGTTTTGCTGCCTGGGTT < 41bp 0.737300310954021 0.411963679021004 NA NA prediction 0.474600621908041 Functional Loss - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39126163 chr3:39126162 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9180 0 0 1 0 2 WDR48 chr3:39126232 5'GT 39126232 Upstream 71bp 8705 chr11 113078638 113078638 1 + T G SKCM 113078639 + 113078619 113078659 41 CAGCTGACCATCAAAAAGGTGGATAAGAACGACGAGGCTGA CAGCTGACCATCAAAAAGGGGGATAAGAACGACGAGGCTGA < 41bp 0.737149075160728 0.400963256991501 NA NA prediction 0.474298150321457 Functional Loss - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078639 chr11:113078638 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9185 0 0 0 0 2 NCAM1 chr11:113078555 3'AG 113078555 Downstream 84bp 8706 chr11 113078638 113078638 1 + T G SKCM 113078639 + 113078619 113078659 41 CAGCTGACCATCAAAAAGGTGGATAAGAACGACGAGGCTGA CAGCTGACCATCAAAAAGGGGGATAAGAACGACGAGGCTGA < 41bp 0.737149075160728 0.400963256991501 NA NA prediction 0.474298150321457 Functional Loss - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113078639 chr11:113078638 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9185 0 0 0 0 2 NCAM1 chr11:113078724 5'GT 113078724 Upstream 87bp 8707 chr3 180685879 180685879 1 + T G BRCA 180685880 + 180685860 180685900 41 ACCCCTCTGAAACGGAATCTGAGCGTAAAGACGAGCTGAGT ACCCCTCTGAAACGGAATCGGAGCGTAAAGACGAGCTGAGT < 41bp 0.872296695267075 0.635160431418711 NA NA prediction 0.47427252769673 Functional Loss - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180685880 chr3:180685879 synonymous SNV . 0 20 hm7G_associated_SNPs_9186 0 0 1 0 1 FXR1 chr3:180685839 3'AG 180685839 Downstream 41bp 8708 chr11 89407329 89407329 1 + T G rs149462108 89407330 + 89407310 89407350 41 TCTTCTTGGTTCTACTGAGTGGGCAGAGGTTAGTTGGTAAT TCTTCTTGGTTCTACTGAGGGGGCAGAGGTTAGTTGGTAAT < 41bp 0.827505230516477 0.590481510698337 NA NA prediction 0.47404743963628 Functional Loss - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89407330 chr11:89407329 . . 0 20 hm7G_associated_SNPs_9188 0 0 0 0 1 FOLH1B chr11:89407337 5'GT 89407337 Upstream 9bp 8709 chr5 153181968 153181968 1 + T G UCEC 153181969 + 153181949 153181989 41 GCAGGCGTGTTCTACATCCTGATCGGAGGACTTGGACTAGC GCAGGCGTGTTCTACATCCGGATCGGAGGACTTGGACTAGC < 41bp 0.736968367414748 0.41665002163741 NA NA prediction 0.473936734829496 Functional Loss - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153181969 chr5:153181968 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9189 0 0 0 0 2 GRIA1 chr5:153181916 3'AG 153181916 Downstream 53bp 8710 chr5 153181968 153181968 1 + T G UCEC 153181969 + 153181949 153181989 41 GCAGGCGTGTTCTACATCCTGATCGGAGGACTTGGACTAGC GCAGGCGTGTTCTACATCCGGATCGGAGGACTTGGACTAGC < 41bp 0.736968367414748 0.41665002163741 NA NA prediction 0.473936734829496 Functional Loss - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153181969 chr5:153181968 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9189 0 0 0 0 2 GRIA1 chr5:153182050 5'GT 153182050 Upstream 83bp 8711 chr11 7079669 7079669 1 + T G LUAD 7079670 + 7079650 7079690 41 CAACATGCACAATGTACTCTGAAGAGCCTTGTGTAAGTGTC CAACATGCACAATGTACTCGGAAGAGCCTTGTGTAAGTGTC < 41bp 0.736894073245051 0.418975631284073 NA NA prediction 0.473788146490101 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7079670 chr11:7079669 nonsynonymous SNV 0.075 3 20 hm7G_associated_SNPs_9190 0 0 0 0 1 NLRP14 chr11:7079681 5'GT 7079681 Upstream 13bp 8712 chrX 135076963 135076963 1 + T G UCEC 135076964 + 135076944 135076984 41 GGTCTTTTGGTGGGCCTTGTGCTTCGGTATGGCATTCATGT GGTCTTTTGGTGGGCCTTGGGCTTCGGTATGGCATTCATGT < 41bp 0.879578126258918 0.642699521515386 NA NA prediction 0.473757209487065 Functional Loss - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135076964 chrX:135076963 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9191 0 0 1 0 2 SLC9A6 chrX:135076945 3'AG 135076945 Downstream 19bp 8713 chrX 135076963 135076963 1 + T G UCEC 135076964 + 135076944 135076984 41 GGTCTTTTGGTGGGCCTTGTGCTTCGGTATGGCATTCATGT GGTCTTTTGGTGGGCCTTGGGCTTCGGTATGGCATTCATGT < 41bp 0.879578126258918 0.642699521515386 NA NA prediction 0.473757209487065 Functional Loss - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135076964 chrX:135076963 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9191 0 0 1 0 2 SLC9A6 chrX:135077048 5'GT 135077048 Upstream 86bp 8714 chr8 21883207 21883207 1 + T G COAD 21883208 + 21883188 21883228 41 ATGCATCGCGTGGAGATCCTGCCCCCAGCAAACCAGGAGGA ATGCATCGCGTGGAGATCCGGCCCCCAGCAAACCAGGAGGA < 41bp 0.89350490401625 0.656638409779134 NA NA prediction 0.473732988474232 Functional Loss - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21883208 chr8:21883207 nonsynonymous SNV 0.713 3 20 hm7G_associated_SNPs_9192 0 0 1 0 2 NPM2 chr8:21883158 3'AG 21883158 Downstream 50bp 8715 chr8 21883207 21883207 1 + T G COAD 21883208 + 21883188 21883228 41 ATGCATCGCGTGGAGATCCTGCCCCCAGCAAACCAGGAGGA ATGCATCGCGTGGAGATCCGGCCCCCAGCAAACCAGGAGGA < 41bp 0.89350490401625 0.656638409779134 NA NA prediction 0.473732988474232 Functional Loss - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21883208 chr8:21883207 nonsynonymous SNV 0.713 3 20 hm7G_associated_SNPs_9192 0 0 1 0 2 NPM2 chr8:21883283 5'GT 21883283 Upstream 77bp 8716 chr4 37847295 37847295 1 + T G SKCM 37847296 + 37847276 37847316 41 ACAAAACCAAGGCCAGAATTGTTTTAGCTAACGACCCGGAT ACAAAACCAAGGCCAGAATGGTTTTAGCTAACGACCCGGAT < 41bp 0.872717712174611 0.635861573455803 NA NA prediction 0.473712277437615 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37847296 chr4:37847295 nonsynonymous SNV 0.750 1 20 hm7G_associated_SNPs_9194 0 0 1 0 2 PGM2 chr4:37847254 3'AG 37847254 Downstream 42bp 8717 chr4 37847295 37847295 1 + T G SKCM 37847296 + 37847276 37847316 41 ACAAAACCAAGGCCAGAATTGTTTTAGCTAACGACCCGGAT ACAAAACCAAGGCCAGAATGGTTTTAGCTAACGACCCGGAT < 41bp 0.872717712174611 0.635861573455803 NA NA prediction 0.473712277437615 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37847296 chr4:37847295 nonsynonymous SNV 0.750 1 20 hm7G_associated_SNPs_9194 0 0 1 0 2 PGM2 chr4:37847351 5'GT 37847351 Upstream 57bp 8718 chr14 31143171 31143171 1 + T G LUSC 31143172 + 31143152 31143192 41 GAGCCATAAGTATGCTTTCTGACAATACCGCTAAGCTAACA GAGCCATAAGTATGCTTTCGGACAATACCGCTAAGCTAACA < 41bp 0.736844295983699 0.409632017824855 NA NA prediction 0.473688591967398 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31143172 chr14:31143171 synonymous SNV . 0 20 hm7G_associated_SNPs_9195 0 0 1 0 2 SCFD1 chr14:31143130 3'AG 31143130 Downstream 42bp 8719 chr14 31143171 31143171 1 + T G LUSC 31143172 + 31143152 31143192 41 GAGCCATAAGTATGCTTTCTGACAATACCGCTAAGCTAACA GAGCCATAAGTATGCTTTCGGACAATACCGCTAAGCTAACA < 41bp 0.736844295983699 0.409632017824855 NA NA prediction 0.473688591967398 Functional Loss - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31143172 chr14:31143171 synonymous SNV . 0 20 hm7G_associated_SNPs_9195 0 0 1 0 2 SCFD1 chr14:31143203 5'GT 31143203 Upstream 33bp 8720 chr1 158152725 158152725 1 + T G STAD 158152726 + 158152706 158152746 41 GGCCCTGGCCGTCTGCTGCTGGTGTGCCATGTCTCAGGATT GGCCCTGGCCGTCTGCTGCGGGTGTGCCATGTCTCAGGATT < 41bp 0.736830671988962 0.390577108288503 NA NA prediction 0.473661343977925 Functional Loss - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152726 chr1:158152725 nonsynonymous SNV 0.863 3 20 hm7G_associated_SNPs_9197 0 0 0 0 1 CD1D chr1:158152668 3'AG 158152668 Downstream 58bp 8721 chr3 20161148 20161148 1 + T G BLCA 20161149 + 20161129 20161169 41 ATTCAACCTCATCTTCCCTTGAGCAGCCAAACGCAGGGAGC ATTCAACCTCATCTTCCCTGGAGCAGCCAAACGCAGGGAGC < 41bp 0.736819979789883 0.388857330616938 NA NA prediction 0.473639959579766 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20161149 chr3:20161148 synonymous SNV . 0 20 hm7G_associated_SNPs_9198 0 0 1 0 2 KAT2B chr3:20161090 3'AG 20161090 Downstream 59bp 8722 chr3 20161148 20161148 1 + T G BLCA 20161149 + 20161129 20161169 41 ATTCAACCTCATCTTCCCTTGAGCAGCCAAACGCAGGGAGC ATTCAACCTCATCTTCCCTGGAGCAGCCAAACGCAGGGAGC < 41bp 0.736819979789883 0.388857330616938 NA NA prediction 0.473639959579766 Functional Loss - KAT2B ENSG00000114166 CDS Human protein_coding chr3:20161149 chr3:20161148 synonymous SNV . 0 20 hm7G_associated_SNPs_9198 0 0 1 0 2 KAT2B chr3:20161215 5'GT 20161215 Upstream 68bp 8723 chr3 169999697 169999697 1 + T G OV 169999698 + 169999678 169999718 41 TTGTTATAGAGTATGTAAATGGAGGAGACCTAATGTTTCAT TTGTTATAGAGTATGTAAAGGGAGGAGACCTAATGTTTCAT < 41bp 0.854567552935874 0.617791186108462 NA NA prediction 0.473552733654823 Functional Loss - PRKCI ENSG00000163558 CDS Human protein_coding chr3:169999698 chr3:169999697 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9199 0 0 0 0 2 PRKCI chr3:169999670 3'AG 169999670 Downstream 28bp 8724 chr3 169999697 169999697 1 + T G OV 169999698 + 169999678 169999718 41 TTGTTATAGAGTATGTAAATGGAGGAGACCTAATGTTTCAT TTGTTATAGAGTATGTAAAGGGAGGAGACCTAATGTTTCAT < 41bp 0.854567552935874 0.617791186108462 NA NA prediction 0.473552733654823 Functional Loss - PRKCI ENSG00000163558 CDS Human protein_coding chr3:169999698 chr3:169999697 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9199 0 0 0 0 2 PRKCI chr3:169999756 5'GT 169999756 Upstream 60bp 8725 chr15 101434212 101434212 1 + T G HNSC 101434213 + 101434193 101434233 41 TGGCACCCGCCCTCTGCTGTGGGAACACCATGGTCCTGAAG TGGCACCCGCCCTCTGCTGGGGGAACACCATGGTCCTGAAG < 41bp 0.73677204513044 0.381037324549458 NA NA prediction 0.473544090260879 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101434213 chr15:101434212 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_9200 0 0 0 0 2 ALDH1A3 chr15:101434159 3'AG 101434159 Downstream 54bp 8726 chr15 101434212 101434212 1 + T G HNSC 101434213 + 101434193 101434233 41 TGGCACCCGCCCTCTGCTGTGGGAACACCATGGTCCTGAAG TGGCACCCGCCCTCTGCTGGGGGAACACCATGGTCCTGAAG < 41bp 0.73677204513044 0.381037324549458 NA NA prediction 0.473544090260879 Functional Loss - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101434213 chr15:101434212 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_9200 0 0 0 0 2 ALDH1A3 chr15:101434287 5'GT 101434287 Upstream 76bp 8727 chr7 116397506 116397506 1 + T G STAD 116397507 + 116397487 116397527 41 CCAGATTGAAATGCACAGTTGGTCCTGCCATGAATAAGCAT CCAGATTGAAATGCACAGTGGGTCCTGCCATGAATAAGCAT < 41bp 0.736756477785489 0.426026014787878 NA NA prediction 0.473512955570977 Functional Loss - MET ENSG00000105976 CDS Human protein_coding chr7:116397507 chr7:116397506 synonymous SNV . 0 20 hm7G_associated_SNPs_9201 0 0 1 0 2 MET chr7:116397491 3'AG 116397491 Downstream 16bp 8728 chr7 116397506 116397506 1 + T G STAD 116397507 + 116397487 116397527 41 CCAGATTGAAATGCACAGTTGGTCCTGCCATGAATAAGCAT CCAGATTGAAATGCACAGTGGGTCCTGCCATGAATAAGCAT < 41bp 0.736756477785489 0.426026014787878 NA NA prediction 0.473512955570977 Functional Loss - MET ENSG00000105976 CDS Human protein_coding chr7:116397507 chr7:116397506 synonymous SNV . 0 20 hm7G_associated_SNPs_9201 0 0 1 0 2 MET chr7:116397593 5'GT 116397593 Upstream 88bp 8729 chr2 26350021 26350021 1 + T G UCEC 26350022 + 26350002 26350042 41 TTTCATTTTAGCATGCCAATGAAGATGTGGAAAGAATGTTA TTTCATTTTAGCATGCCAAGGAAGATGTGGAAAGAATGTTA < 41bp 0.859754893863008 0.623001832270527 NA NA prediction 0.473506123184963 Functional Loss - RAB10 ENSG00000084733 CDS Human protein_coding chr2:26350022 chr2:26350021 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9202 0 0 1 0 2 RAB10 chr2:26350013 3'AG 26350013 Downstream 9bp 8730 chr2 26350021 26350021 1 + T G UCEC 26350022 + 26350002 26350042 41 TTTCATTTTAGCATGCCAATGAAGATGTGGAAAGAATGTTA TTTCATTTTAGCATGCCAAGGAAGATGTGGAAAGAATGTTA < 41bp 0.859754893863008 0.623001832270527 NA NA prediction 0.473506123184963 Functional Loss - RAB10 ENSG00000084733 CDS Human protein_coding chr2:26350022 chr2:26350021 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9202 0 0 1 0 2 RAB10 chr2:26350102 5'GT 26350102 Upstream 82bp 8731 chr11 7060077 7060077 1 + T G UCEC 7060078 + 7060058 7060098 41 AAGATGAACCTGAAGGATCTGTGTGAGAGAGCGAAAGAAGA AAGATGAACCTGAAGGATCGGTGTGAGAGAGCGAAAGAAGA < 41bp 0.868420270714388 0.631689145073924 NA NA prediction 0.473462251280928 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7060078 chr11:7060077 nonsynonymous SNV 0.826 3 20 hm7G_associated_SNPs_9204 0 0 0 0 1 NLRP14 chr11:7060106 5'GT 7060106 Upstream 30bp 8732 chr9 104075120 104075120 1 + T G SARC 104075121 + 104075101 104075141 41 AAGACGAAGAGCAGTCGACTGGCCAAGCCGGTGCTGTGCCT AAGACGAAGAGCAGTCGACGGGCCAAGCCGGTGCTGTGCCT < 41bp 0.889466819366678 0.652737420588124 NA NA prediction 0.473458797557107 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104075121 chr9:104075120 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9205 0 0 0 0 1 PLPPR1 chr9:104075080 3'AG 104075080 Downstream 41bp 8733 chrX 16754330 16754330 1 + T G UCEC 16754331 + 16754311 16754351 41 AGGAACAGAAAAAATTTGTTGAAGAGCAACATACAAAGAAG AGGAACAGAAAAAATTTGTGGAAGAGCAACATACAAAGAAG < 41bp 0.736726549572432 0.429318844137089 NA NA prediction 0.473453099144865 Functional Loss - SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16754331 chrX:16754330 synonymous SNV . 0 20 hm7G_associated_SNPs_9206 0 0 1 0 2 SYAP1 chrX:16754289 3'AG 16754289 Downstream 42bp 8734 chrX 16754330 16754330 1 + T G UCEC 16754331 + 16754311 16754351 41 AGGAACAGAAAAAATTTGTTGAAGAGCAACATACAAAGAAG AGGAACAGAAAAAATTTGTGGAAGAGCAACATACAAAGAAG < 41bp 0.736726549572432 0.429318844137089 NA NA prediction 0.473453099144865 Functional Loss - SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16754331 chrX:16754330 synonymous SNV . 0 20 hm7G_associated_SNPs_9206 0 0 1 0 2 SYAP1 chrX:16754355 5'GT 16754355 Upstream 26bp 8735 chr11 100830620 100830620 1 + T G UCEC 100830621 + 100830601 100830641 41 CTCTTATTTTCAGTGTATTTGAATGAAGCAGGGTTCAACTT CTCTTATTTTCAGTGTATTGGAATGAAGCAGGGTTCAACTT < 41bp 0.736524004321931 0.43791884168154 NA NA prediction 0.473048008643863 Functional Loss - ARHGAP42 ENSG00000165895 CDS Human protein_coding chr11:100830621 chr11:100830620 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_9209 0 0 0 0 2 ARHGAP42 chr11:100830614 3'AG 100830614 Downstream 7bp 8736 chr11 100830620 100830620 1 + T G UCEC 100830621 + 100830601 100830641 41 CTCTTATTTTCAGTGTATTTGAATGAAGCAGGGTTCAACTT CTCTTATTTTCAGTGTATTGGAATGAAGCAGGGTTCAACTT < 41bp 0.736524004321931 0.43791884168154 NA NA prediction 0.473048008643863 Functional Loss - ARHGAP42 ENSG00000165895 CDS Human protein_coding chr11:100830621 chr11:100830620 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_9209 0 0 0 0 2 ARHGAP42 chr11:100830676 5'GT 100830676 Upstream 57bp 8737 chr1 92613327 92613327 1 + T G LUAD 92613328 + 92613308 92613348 41 CAGAAAAGTTGTCTTAATATGTTGATTCAGTCCTTAGTAAG CAGAAAAGTTGTCTTAATAGGTTGATTCAGTCCTTAGTAAG < 41bp 0.736452730039581 0.447510340802801 NA NA prediction 0.472905460079162 Functional Loss - BTBD8 ENSG00000189195 CDS Human protein_coding chr1:92613328 chr1:92613327 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_9211 0 0 0 0 1 BTBD8 chr1:92613241 3'AG 92613241 Downstream 87bp 8738 chr15 74425126 74425126 1 + T G HNSC 74425127 + 74425107 74425147 41 TCGGGCCCTGTGGTTGGTCTGGGCGCTTCTAGGAGTGGCCG TCGGGCCCTGTGGTTGGTCGGGGCGCTTCTAGGAGTGGCCG < 41bp 0.883189843772731 0.646762753312037 NA NA prediction 0.472854180921387 Functional Loss - ISLR2 ENSG00000167178 CDS Human protein_coding chr15:74425127 chr15:74425126 nonsynonymous SNV 0.215 1 20 hm7G_associated_SNPs_9212 0 0 0 0 1 ISLR2 chr15:74425088 3'AG 74425088 Downstream 39bp 8739 chr2 113343582 113343582 1 + T G COAD 113343583 + 113343563 113343603 41 AGAGGTCACCGCTCGCTACTGTGGCCGGGAGCTGGAGCAGT AGAGGTCACCGCTCGCTACGGTGGCCGGGAGCTGGAGCAGT < 41bp 0.883847848930029 0.647438333820373 NA NA prediction 0.472819030219313 Functional Loss - CHCHD5 ENSG00000125611 CDS Human protein_coding chr2:113343583 chr2:113343582 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_9213 0 0 1 0 1 CHCHD5 chr2:113343551 3'AG 113343551 Downstream 32bp 8740 chr13 33629422 33629422 1 + T G SKCM 33629423 + 33629403 33629443 41 GGACATTTCCCTGTGACTTTGCTTGGGGAGTTGTTGACAAC GGACATTTCCCTGTGACTTGGCTTGGGGAGTTGTTGACAAC < 41bp 0.886998000854204 0.650595884426973 NA NA prediction 0.472804232854461 Functional Loss - KL ENSG00000133116 CDS Human protein_coding chr13:33629423 chr13:33629422 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9214 0 0 0 0 2 KL chr13:33629452 5'GT 33629452 Upstream 31bp 8741 chr13 33629422 33629422 1 + T G SKCM 33629423 + 33629403 33629443 41 GGACATTTCCCTGTGACTTTGCTTGGGGAGTTGTTGACAAC GGACATTTCCCTGTGACTTGGCTTGGGGAGTTGTTGACAAC < 41bp 0.886998000854204 0.650595884426973 NA NA prediction 0.472804232854461 Functional Loss - KL ENSG00000133116 CDS Human protein_coding chr13:33629423 chr13:33629422 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9214 0 0 0 0 2 KL chr13:33629502 5'GT 33629502 Upstream 81bp 8742 chr19 14143218 14143218 1 + T G BRCA 14143219 + 14143199 14143239 41 CAGCGCCGGGCCACTGCAGTGCTACGGAGTTGGACCCTTGG CAGCGCCGGGCCACTGCAGGGCTACGGAGTTGGACCCTTGG < 41bp 0.895918626938319 0.659536961916319 NA NA prediction 0.472763330043999 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14143219 chr19:14143218 nonsynonymous SNV 0.913 3 20 hm7G_associated_SNPs_9215 0 0 0 0 2 IL27RA chr19:14143198 3'AG 14143198 Downstream 21bp 8743 chr19 14143218 14143218 1 + T G BRCA 14143219 + 14143199 14143239 41 CAGCGCCGGGCCACTGCAGTGCTACGGAGTTGGACCCTTGG CAGCGCCGGGCCACTGCAGGGCTACGGAGTTGGACCCTTGG < 41bp 0.895918626938319 0.659536961916319 NA NA prediction 0.472763330043999 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14143219 chr19:14143218 nonsynonymous SNV 0.913 3 20 hm7G_associated_SNPs_9215 0 0 0 0 2 IL27RA chr19:14143315 5'GT 14143315 Upstream 98bp 8744 chrX 2644356 2644356 1 + T G COAD 2644357 + 2644337 2644377 41 CTGTCGTGGTCGCCGTGGCTGGAGCCATCTCTAGCTTCATT CTGTCGTGGTCGCCGTGGCGGGAGCCATCTCTAGCTTCATT < 41bp 0.736355078834949 0.399218363481166 NA NA prediction 0.472710157669898 Functional Loss - CD99 ENSG00000002586 CDS Human protein_coding chrX:2644357 chrX:2644356 synonymous SNV . 0 20 hm7G_associated_SNPs_9216 0 0 1 0 2 CD99 chrX:2644301 3'AG 2644301 Downstream 56bp 8745 chrX 2644356 2644356 1 + T G COAD 2644357 + 2644337 2644377 41 CTGTCGTGGTCGCCGTGGCTGGAGCCATCTCTAGCTTCATT CTGTCGTGGTCGCCGTGGCGGGAGCCATCTCTAGCTTCATT < 41bp 0.736355078834949 0.399218363481166 NA NA prediction 0.472710157669898 Functional Loss - CD99 ENSG00000002586 CDS Human protein_coding chrX:2644357 chrX:2644356 synonymous SNV . 0 20 hm7G_associated_SNPs_9216 0 0 1 0 2 CD99 chrX:2644414 5'GT 2644414 Upstream 59bp 8746 chr22 40365518 40365518 1 + T G LUSC 40365519 + 40365499 40365539 41 CGGAGACACACAGACCCAGTGCAGCTCCAGGCGGCAGGGGT CGGAGACACACAGACCCAGGGCAGCTCCAGGCGGCAGGGGT < 41bp 0.89486447192315 0.658707804527976 NA NA prediction 0.472313334790349 Functional Loss - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40365519 chr22:40365518 nonsynonymous SNV 0.967 0 20 hm7G_associated_SNPs_9218 0 0 1 0 1 GRAP2 chr22:40365537 5'GT 40365537 Upstream 20bp 8747 chr5 54674238 54674238 1 + T G PCPG 54674239 + 54674219 54674259 41 AGACAGCAGCTTGCCAAATTGGGTAAAGAAATTGAAGAATA AGACAGCAGCTTGCCAAATGGGGTAAAGAAATTGAAGAATA < 41bp 0.736121435068478 0.4202227348163 NA NA prediction 0.472242870136957 Functional Loss - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54674239 chr5:54674238 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_9221 0 0 1 0 2 SKIV2L2 chr5:54674142 3'AG 54674142 Downstream 97bp 8748 chr5 54674238 54674238 1 + T G PCPG 54674239 + 54674219 54674259 41 AGACAGCAGCTTGCCAAATTGGGTAAAGAAATTGAAGAATA AGACAGCAGCTTGCCAAATGGGGTAAAGAAATTGAAGAATA < 41bp 0.736121435068478 0.4202227348163 NA NA prediction 0.472242870136957 Functional Loss - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54674239 chr5:54674238 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_9221 0 0 1 0 2 SKIV2L2 chr5:54674314 5'GT 54674314 Upstream 77bp 8749 chr20 39795447 39795447 1 + T G GBM 39795448 + 39795428 39795468 41 CACCCGCTATACCGCAAGATGAAGCTGCGCTATCCCATCAA CACCCGCTATACCGCAAGAGGAAGCTGCGCTATCCCATCAA < 41bp 0.735772249789808 0.390759502404628 NA NA prediction 0.471544499579615 Functional Loss - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795448 chr20:39795447 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9224 0 0 1 0 1 PLCG1 chr20:39795499 5'GT 39795499 Upstream 53bp 8750 chr1 166985495 166985495 1 + T G SKCM 166985496 + 166985476 166985516 41 AAAATGATATTCTCTTCTGTGCTTTAGCTGTTTGCAAGAAG AAAATGATATTCTCTTCTGGGCTTTAGCTGTTTGCAAGAAG < 41bp 0.735704420895081 0.407660288331431 NA NA prediction 0.471408841790161 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166985496 chr1:166985495 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_9225 0 0 0 0 2 MAEL chr1:166985459 3'AG 166985459 Downstream 37bp 8751 chr1 166985495 166985495 1 + T G SKCM 166985496 + 166985476 166985516 41 AAAATGATATTCTCTTCTGTGCTTTAGCTGTTTGCAAGAAG AAAATGATATTCTCTTCTGGGCTTTAGCTGTTTGCAAGAAG < 41bp 0.735704420895081 0.407660288331431 NA NA prediction 0.471408841790161 Functional Loss - MAEL ENSG00000143194 CDS Human protein_coding chr1:166985496 chr1:166985495 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_9225 0 0 0 0 2 MAEL chr1:166985521 5'GT 166985521 Upstream 27bp 8752 chr1 45226350 45226350 1 + T G LUSC 45226351 + 45226331 45226371 41 TGCTGAGGGACTCCTTCATTGGGGAGAACTCTAGGACTTGC TGCTGAGGGACTCCTTCATGGGGGAGAACTCTAGGACTTGC < 41bp 0.735647786138632 0.399868440558583 NA NA prediction 0.471295572277264 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45226351 chr1:45226350 nonsynonymous SNV 0.751 4 20 hm7G_associated_SNPs_9226 0 0 1 0 2 KIF2C chr1:45226264 3'AG 45226264 Downstream 87bp 8753 chr1 45226350 45226350 1 + T G LUSC 45226351 + 45226331 45226371 41 TGCTGAGGGACTCCTTCATTGGGGAGAACTCTAGGACTTGC TGCTGAGGGACTCCTTCATGGGGGAGAACTCTAGGACTTGC < 41bp 0.735647786138632 0.399868440558583 NA NA prediction 0.471295572277264 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45226351 chr1:45226350 nonsynonymous SNV 0.751 4 20 hm7G_associated_SNPs_9226 0 0 1 0 2 KIF2C chr1:45226374 5'GT 45226374 Upstream 25bp 8754 chr6 41751219 41751219 1 + T G rs150368829 41751220 + 41751200 41751240 41 GCTTTGCCACAAATGTCAGTGCAGAACTCTGGCTGGCCCCA GCTTTGCCACAAATGTCAGGGCAGAACTCTGGCTGGCCCCA < 41bp 0.735586104597088 0.397983528826775 NA NA prediction 0.471172209194177 Functional Loss - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41751220 chr6:41751219 nonsynonymous SNV 0.671 1 20 hm7G_associated_SNPs_9228 0 0 1 0 1 PRICKLE4 chr6:41751200 3'AG 41751200 Downstream 20bp 8755 chr5 82789433 82789433 1 + T G KIRC 82789434 + 82789414 82789454 41 TGAGGCTGCTCAGAAGGCTTGTTTGGACGTTGGGGCAGTCA TGAGGCTGCTCAGAAGGCTGGTTTGGACGTTGGGGCAGTCA < 41bp 0.735500150397132 0.409841501386716 NA NA prediction 0.471000300794264 Functional Loss - VCAN ENSG00000038427 CDS Human protein_coding chr5:82789434 chr5:82789433 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_9229 0 0 1 0 1 VCAN chr5:82789365 3'AG 82789365 Downstream 69bp 8756 chr8 144803565 144803565 1 + T G rs542636144 144803566 + 144803546 144803586 41 CCCAGAGCAGCCCAGGCCATGACCCTGCCGAGCACGGTGTG CCCAGAGCAGCCCAGGCCAGGACCCTGCCGAGCACGGTGTG < 41bp 0.735451608298139 0.396999853486776 NA NA prediction 0.470903216596277 Functional Loss - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144803566 chr8:144803565 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_9230 0 0 0 0 1 MAPK15 chr8:144803581 5'GT 144803581 Upstream 17bp 8757 chr19 35773502 35773502 1 + T G KIRC 35773503 + 35773483 35773523 41 GGCACTGAGCTCCCAGATCTGGGCCGCTTGCCTCCTGCTCC GGCACTGAGCTCCCAGATCGGGGCCGCTTGCCTCCTGCTCC < 41bp 0.73535149219965 0.402313488728229 NA NA prediction 0.470702984399299 Functional Loss - HAMP ENSG00000105697 CDS Human protein_coding chr19:35773503 chr19:35773502 nonsynonymous SNV 0.027 1 20 hm7G_associated_SNPs_9232 0 0 1 0 1 HAMP chr19:35773570 5'GT 35773570 Upstream 69bp 8758 chr15 63354834 63354834 1 + T G LGG 63354835 + 63354815 63354855 41 AATTGGAGAAAAGCATTGATGACTTAGAAGGTAAGATCTTA AATTGGAGAAAAGCATTGAGGACTTAGAAGGTAAGATCTTA < 41bp 0.85986125386437 0.62453771662905 NA NA prediction 0.47064707447064 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354835 chr15:63354834 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9234 1 0 1 1 2 TPM1 chr15:63354775 3'AG 63354775 Downstream 60bp 8759 chr15 63354834 63354834 1 + T G LGG 63354835 + 63354815 63354855 41 AATTGGAGAAAAGCATTGATGACTTAGAAGGTAAGATCTTA AATTGGAGAAAAGCATTGAGGACTTAGAAGGTAAGATCTTA < 41bp 0.85986125386437 0.62453771662905 NA NA prediction 0.47064707447064 Functional Loss - TPM1 ENSG00000140416 CDS Human protein_coding chr15:63354835 chr15:63354834 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9234 1 0 1 1 2 TPM1 chr15:63354844 5'GT 63354844 Upstream 11bp 8760 chr20 42885803 42885803 1 + T G BRCA 42885804 + 42885784 42885824 41 CGCCTGCAGGTGCGGCTGGTGATCGCCGAGAAGGGCCTGGT CGCCTGCAGGTGCGGCTGGGGATCGCCGAGAAGGGCCTGGT < 41bp 0.886817063527023 0.651502464369442 NA NA prediction 0.470629198315163 Functional Loss - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42885804 chr20:42885803 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9235 0 0 0 0 1 GDAP1L1 chr20:42885793 3'AG 42885793 Downstream 11bp 8761 chr2 209315505 209315505 1 + T G COAD 209315506 + 209315486 209315526 41 CATTTGTTGCAGCATGGGCTGTGGCACGAGCAACTCTGGCT CATTTGTTGCAGCATGGGCGGTGGCACGAGCAACTCTGGCT < 41bp 0.735299876376017 0.416327501048064 NA NA prediction 0.470599752752033 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209315506 chr2:209315505 synonymous SNV . 0 20 hm7G_associated_SNPs_9236 0 0 0 0 1 PTH2R chr2:209315534 5'GT 209315534 Upstream 30bp 8762 chr2 241404605 241404605 1 + T G LUAD 241404606 + 241404586 241404626 41 TGCCAGTGATGACCGCTGCTGGAACGGGATGGCCAGAGGCC TGCCAGTGATGACCGCTGCGGGAACGGGATGGCCAGAGGCC < 41bp 0.890743245109422 0.655447184256572 NA NA prediction 0.4705921217057 Functional Loss - GPC1 ENSG00000063660 CDS Human protein_coding chr2:241404606 chr2:241404605 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9237 0 0 0 0 1 GPC1 chr2:241404627 5'GT 241404627 Upstream 23bp 8763 chr7 63726365 63726365 1 + T G STAD 63726366 + 63726346 63726386 41 CAAGAAGATATGGAAAAAGTGGACATGACAATTTACAAGTA CAAGAAGATATGGAAAAAGGGGACATGACAATTTACAAGTA < 41bp 0.735193932360938 0.441550125064322 NA NA prediction 0.470387864721877 Functional Loss - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63726366 chr7:63726365 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_9239 0 0 0 0 1 ZNF679 chr7:63726274 3'AG 63726274 Downstream 92bp 8764 chr2 201488594 201488594 1 + T G SKCM 201488595 + 201488575 201488615 41 GTGTCGTAGGTGTTCTGTGTGGGTCAGCTTGTCTGTGCTGT GTGTCGTAGGTGTTCTGTGGGGGTCAGCTTGTCTGTGCTGT < 41bp 0.735149528864848 0.403501209664328 NA NA prediction 0.470299057729696 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201488595 chr2:201488594 nonsynonymous SNV 0.280 1 20 hm7G_associated_SNPs_9240 0 0 0 0 1 AOX1 chr2:201488584 3'AG 201488584 Downstream 11bp 8765 chr15 69682054 69682054 1 + T G HNSC 69682055 + 69682035 69682075 41 TCATGTGCACCACTTTCCATGACTACTACGTGGCCCTGGCT TCATGTGCACCACTTTCCAGGACTACTACGTGGCCCTGGCT < 41bp 0.735041056030485 0.380467898573388 NA NA prediction 0.470082112060971 Functional Loss - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69682055 chr15:69682054 nonsynonymous SNV 0.076 2 20 hm7G_associated_SNPs_9242 0 0 0 0 2 PAQR5 chr15:69681993 3'AG 69681993 Downstream 62bp 8766 chr15 69682054 69682054 1 + T G HNSC 69682055 + 69682035 69682075 41 TCATGTGCACCACTTTCCATGACTACTACGTGGCCCTGGCT TCATGTGCACCACTTTCCAGGACTACTACGTGGCCCTGGCT < 41bp 0.735041056030485 0.380467898573388 NA NA prediction 0.470082112060971 Functional Loss - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69682055 chr15:69682054 nonsynonymous SNV 0.076 2 20 hm7G_associated_SNPs_9242 0 0 0 0 2 PAQR5 chr15:69682119 5'GT 69682119 Upstream 66bp 8767 chr5 78417046 78417046 1 + T G UCEC 78417047 + 78417027 78417067 41 TTAACTGATTCCAGTATTTTGAACACGTTGAAGAAGCTGTG TTAACTGATTCCAGTATTTGGAACACGTTGAAGAAGCTGTG < 41bp 0.876549409866622 0.641528741225723 NA NA prediction 0.470041337281798 Functional Loss - BHMT ENSG00000145692 CDS Human protein_coding chr5:78417047 chr5:78417046 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_9243 0 0 0 0 1 BHMT chr5:78417041 3'AG 78417041 Downstream 6bp 8768 chr1 156848988 156848988 1 + T G OV 156848989 + 156848969 156849009 41 CCCCTGGGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCAGGT CCCCTGGGTCTGGGGCAGCGGCTGGCCGTGGCTAGCCAGGT < 41bp 0.896382420898521 0.661363136275398 NA NA prediction 0.470038569246246 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156848989 chr1:156848988 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_9244 0 0 0 0 1 NTRK1 chr1:156848914 3'AG 156848914 Downstream 75bp 8769 chr1 36773405 36773405 1 + T G rs35343437 36773406 + 36773386 36773426 41 ACATGCCTTCAGTCAGCCCTGGTCCCCAGCGGCCTCCCAAG ACATGCCTTCAGTCAGCCCGGGTCCCCAGCGGCCTCCCAAG < 41bp 0.734896536454873 0.38465774970584 NA NA prediction 0.469793072909746 Functional Loss - SH3D21 ENSG00000214193 CDS Human protein_coding chr1:36773406 chr1:36773405 synonymous SNV . 0 20 hm7G_associated_SNPs_9248 0 0 1 0 2 SH3D21 chr1:36773371 3'AG 36773371 Downstream 35bp 8770 chr1 36773405 36773405 1 + T G rs35343437 36773406 + 36773386 36773426 41 ACATGCCTTCAGTCAGCCCTGGTCCCCAGCGGCCTCCCAAG ACATGCCTTCAGTCAGCCCGGGTCCCCAGCGGCCTCCCAAG < 41bp 0.734896536454873 0.38465774970584 NA NA prediction 0.469793072909746 Functional Loss - SH3D21 ENSG00000214193 CDS Human protein_coding chr1:36773406 chr1:36773405 synonymous SNV . 0 20 hm7G_associated_SNPs_9248 0 0 1 0 2 SH3D21 chr1:36773426 5'GT 36773426 Upstream 22bp 8771 chr8 42207536 42207536 1 + T G SKCM 42207537 + 42207517 42207557 41 TCTTAAAGATTCGGCAGGATGATACGAGTTCATCCATCAAT TCTTAAAGATTCGGCAGGAGGATACGAGTTCATCCATCAAT < 41bp 0.876566908858688 0.641909331300351 NA NA prediction 0.469315155116675 Functional Loss - POLB ENSG00000070501 CDS Human protein_coding chr8:42207537 chr8:42207536 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_9253 0 0 0 0 2 POLB chr8:42207525 3'AG 42207525 Downstream 12bp 8772 chr8 42207536 42207536 1 + T G SKCM 42207537 + 42207517 42207557 41 TCTTAAAGATTCGGCAGGATGATACGAGTTCATCCATCAAT TCTTAAAGATTCGGCAGGAGGATACGAGTTCATCCATCAAT < 41bp 0.876566908858688 0.641909331300351 NA NA prediction 0.469315155116675 Functional Loss - POLB ENSG00000070501 CDS Human protein_coding chr8:42207537 chr8:42207536 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_9253 0 0 0 0 2 POLB chr8:42207583 5'GT 42207583 Upstream 48bp 8773 chr22 40805283 40805283 1 + T G LAML 40805284 + 40805264 40805304 41 CTGCACCTGTGGCTGGAGGTGCTCTGCTCCAGCCTGCCCAC CTGCACCTGTGGCTGGAGGGGCTCTGCTCCAGCCTGCCCAC < 41bp 0.734497731849725 0.387246411305837 NA NA prediction 0.468995463699449 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40805284 chr22:40805283 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_9254 0 0 0 0 2 SGSM3 chr22:40805254 3'AG 40805254 Downstream 30bp 8774 chr22 40805283 40805283 1 + T G LAML 40805284 + 40805264 40805304 41 CTGCACCTGTGGCTGGAGGTGCTCTGCTCCAGCCTGCCCAC CTGCACCTGTGGCTGGAGGGGCTCTGCTCCAGCCTGCCCAC < 41bp 0.734497731849725 0.387246411305837 NA NA prediction 0.468995463699449 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40805284 chr22:40805283 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_9254 0 0 0 0 2 SGSM3 chr22:40805376 5'GT 40805376 Upstream 94bp 8775 chr9 139992294 139992294 1 + T G rs186504463 139992295 + 139992275 139992315 41 CGAAGCTGGAGGGGAGCGGTGATCGAGCCTGAGCAGGGCAC CGAAGCTGGAGGGGAGCGGGGATCGAGCCTGAGCAGGGCAC < 41bp 0.734363919258167 0.397591837266607 NA NA prediction 0.468727838516334 Functional Loss - MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:139992295 chr9:139992294 nonsynonymous SNV 0.340 1 20 hm7G_associated_SNPs_9257 2 0 1 0 2 MAN1B1 chr9:139992280 3'AG 139992280 Downstream 15bp 8776 chr9 139992294 139992294 1 + T G rs186504463 139992295 + 139992275 139992315 41 CGAAGCTGGAGGGGAGCGGTGATCGAGCCTGAGCAGGGCAC CGAAGCTGGAGGGGAGCGGGGATCGAGCCTGAGCAGGGCAC < 41bp 0.734363919258167 0.397591837266607 NA NA prediction 0.468727838516334 Functional Loss - MAN1B1 ENSG00000177239 CDS Human protein_coding chr9:139992295 chr9:139992294 nonsynonymous SNV 0.340 1 20 hm7G_associated_SNPs_9257 2 0 1 0 2 MAN1B1 chr9:139992389 5'GT 139992389 Upstream 96bp 8777 chr4 25253968 25253968 1 + T G rs200989720 25253969 + 25253949 25253989 41 TTGGTACTTCAGAGATGAATGCATTCTTGGATGACCCAGAA TTGGTACTTCAGAGATGAAGGCATTCTTGGATGACCCAGAA < 41bp 0.882720679321693 0.648405488758009 NA NA prediction 0.468630381127368 Functional Loss - PI4K2B ENSG00000038210 CDS Human protein_coding chr4:25253969 chr4:25253968 nonsynonymous SNV 0.254 3 20 hm7G_associated_SNPs_9259 0 0 1 0 1 PI4K2B chr4:25253943 3'AG 25253943 Downstream 26bp 8778 chr8 86358407 86358407 1 + T G UCEC 86358408 + 86358388 86358428 41 CACAAAGTTTGACCCATCCTGCCTGTTCCCGGCATGCCGGG CACAAAGTTTGACCCATCCGGCCTGTTCCCGGCATGCCGGG < 41bp 0.893157567276869 0.658900820530511 NA NA prediction 0.468513493492716 Functional Loss - CA3 ENSG00000164879 CDS Human protein_coding chr8:86358408 chr8:86358407 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_9262 0 0 0 0 1 CA3 chr8:86358371 3'AG 86358371 Downstream 37bp 8779 chr12 100897251 100897251 1 + T G rs144715621 100897252 + 100897232 100897272 41 TCAGGATTTTTCATGGAAATGATGAGTATGAAGCCCGCGAA TCAGGATTTTTCATGGAAAGGATGAGTATGAAGCCCGCGAA < 41bp 0.734195629165872 0.432284134582648 NA NA prediction 0.468391258331744 Functional Loss - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100897252 chr12:100897251 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_9264 0 0 0 0 1 NR1H4 chr12:100897274 5'GT 100897274 Upstream 24bp 8780 chr22 31969183 31969183 1 + T G SKCM 31969184 + 31969164 31969204 41 TACCTGCAAGTCCGCAGAGTGAAGAGACAGCAGAATGGTGA TACCTGCAAGTCCGCAGAGGGAAGAGACAGCAGAATGGTGA < 41bp 0.734166408210282 0.405624738315678 NA NA prediction 0.468332816420564 Functional Loss - SFI1 ENSG00000198089 CDS Human protein_coding chr22:31969184 chr22:31969183 nonsynonymous SNV 0.633 3 20 hm7G_associated_SNPs_9265 0 0 1 0 1 SFI1 chr22:31969200 5'GT 31969200 Upstream 18bp 8781 chr2 54891603 54891603 1 + T G HNSC 54891604 + 54891584 54891624 41 CCCTAGATGGCAGAAACGGTGGACACAAGCGAAATGGTCAA CCCTAGATGGCAGAAACGGGGGACACAAGCGAAATGGTCAA < 41bp 0.734031609104956 0.403011812671849 NA NA prediction 0.468063218209912 Functional Loss - SPTBN1 ENSG00000115306 CDS Human protein_coding chr2:54891604 chr2:54891603 nonsynonymous SNV 0.945 0 20 hm7G_associated_SNPs_9268 0 0 1 0 1 SPTBN1 chr2:54891590 3'AG 54891590 Downstream 14bp 8782 chrY 22918696 22918696 1 + T G LUSC 22918697 + 22918677 22918717 41 AGAAGCACTTGAAGCGTGTTGCAGCGCCGAAGCATTGGATG AGAAGCACTTGAAGCGTGTGGCAGCGCCGAAGCATTGGATG < 41bp 0.886837337329124 0.652936879040577 NA NA prediction 0.467800916577094 Functional Loss - RPS4Y2 ENSG00000157828 CDS Human other chrY:22918697 chrY:22918696 synonymous SNV . 0 20 hm7G_associated_SNPs_9270 0 0 0 0 2 RPS4Y2 chrY:22918664 3'AG 22918664 Downstream 33bp 8783 chrY 22918696 22918696 1 + T G LUSC 22918697 + 22918677 22918717 41 AGAAGCACTTGAAGCGTGTTGCAGCGCCGAAGCATTGGATG AGAAGCACTTGAAGCGTGTGGCAGCGCCGAAGCATTGGATG < 41bp 0.886837337329124 0.652936879040577 NA NA prediction 0.467800916577094 Functional Loss - RPS4Y2 ENSG00000157828 CDS Human other chrY:22918697 chrY:22918696 synonymous SNV . 0 20 hm7G_associated_SNPs_9270 0 0 0 0 2 RPS4Y2 chrY:22918741 5'GT 22918741 Upstream 46bp 8784 chr9 138438712 138438712 1 + T G STAD 138438713 + 138438693 138438733 41 AAGGTGTCCCCAGTGAAGGTGACAGCCCTGGGCGGTGGGAA AAGGTGTCCCCAGTGAAGGGGACAGCCCTGGGCGGTGGGAA < 41bp 0.733894773809569 0.395397935349893 NA NA prediction 0.467789547619138 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138438713 chr9:138438712 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_9271 0 0 0 0 2 OBP2A chr9:138438624 3'AG 138438624 Downstream 89bp 8785 chr9 138438712 138438712 1 + T G STAD 138438713 + 138438693 138438733 41 AAGGTGTCCCCAGTGAAGGTGACAGCCCTGGGCGGTGGGAA AAGGTGTCCCCAGTGAAGGGGACAGCCCTGGGCGGTGGGAA < 41bp 0.733894773809569 0.395397935349893 NA NA prediction 0.467789547619138 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138438713 chr9:138438712 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_9271 0 0 0 0 2 OBP2A chr9:138438757 5'GT 138438757 Upstream 46bp 8786 chr5 148679852 148679852 1 + T G rs146019496 148679853 + 148679833 148679873 41 GCAAAGGAGGTCTCCTACCTGTATGTGAACACAGCAGACCT GCAAAGGAGGTCTCCTACCGGTATGTGAACACAGCAGACCT < 41bp 0.733628563622237 0.400400115992526 NA NA prediction 0.467257127244475 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148679853 chr5:148679852 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9276 0 0 0 0 2 AFAP1L1 chr5:148679834 3'AG 148679834 Downstream 19bp 8787 chr5 148679852 148679852 1 + T G rs146019496 148679853 + 148679833 148679873 41 GCAAAGGAGGTCTCCTACCTGTATGTGAACACAGCAGACCT GCAAAGGAGGTCTCCTACCGGTATGTGAACACAGCAGACCT < 41bp 0.733628563622237 0.400400115992526 NA NA prediction 0.467257127244475 Functional Loss - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148679853 chr5:148679852 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9276 0 0 0 0 2 AFAP1L1 chr5:148679917 5'GT 148679917 Upstream 66bp 8788 chr17 25974317 25974317 1 + T G OV 25974318 + 25974298 25974338 41 TCCACATCAACCTGTGCTCTGGGAACCACATCGCCTTCCAC TCCACATCAACCTGTGCTCGGGGAACCACATCGCCTTCCAC < 41bp 0.733538541388066 0.384093234390253 NA NA prediction 0.467077082776133 Functional Loss - LGALS9 ENSG00000168961 CDS Human protein_coding chr17:25974318 chr17:25974317 synonymous SNV . 0 20 hm7G_associated_SNPs_9278 0 0 0 0 1 LGALS9 chr17:25974296 3'AG 25974296 Downstream 22bp 8789 chr1 111726191 111726191 1 + T G LUAD 111726192 + 111726172 111726212 41 GCTTTATTGATGAATATATTGTACTTTGGATTGCCCTGGTA GCTTTATTGATGAATATATGGTACTTTGGATTGCCCTGGTA < 41bp 0.733521761512115 0.496592207135139 NA NA prediction 0.467043523024229 Functional Loss - CEPT1 ENSG00000134255 CDS Human protein_coding chr1:111726192 chr1:111726191 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_9279 0 0 1 0 1 CEPT1 chr1:111726209 5'GT 111726209 Upstream 19bp 8790 chr1 156894741 156894741 1 + T G COAD 156894742 + 156894722 156894762 41 CACGACAGCTTGTGGAAGGTGGGGCTGACCGATAAGACCCT CACGACAGCTTGTGGAAGGGGGGGCTGACCGATAAGACCCT < 41bp 0.787614059374953 0.554134832391067 NA NA prediction 0.466958453967772 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156894742 chr1:156894741 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_9280 0 0 0 0 2 LRRC71 chr1:156894730 3'AG 156894730 Downstream 12bp 8791 chr1 156894741 156894741 1 + T G COAD 156894742 + 156894722 156894762 41 CACGACAGCTTGTGGAAGGTGGGGCTGACCGATAAGACCCT CACGACAGCTTGTGGAAGGGGGGGCTGACCGATAAGACCCT < 41bp 0.787614059374953 0.554134832391067 NA NA prediction 0.466958453967772 Functional Loss - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156894742 chr1:156894741 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_9280 0 0 0 0 2 LRRC71 chr1:156894807 5'GT 156894807 Upstream 67bp 8792 chrX 70345537 70345537 1 + T G LUSC 70345538 + 70345518 70345558 41 CTTGCTCCTATTGTGCCTCTGAATCCTGGAGACCTGACATT CTTGCTCCTATTGTGCCTCGGAATCCTGGAGACCTGACATT < 41bp 0.733392656342841 0.391976355935394 NA NA prediction 0.466785312685681 Functional Loss - MED12 ENSG00000184634 CDS Human protein_coding chrX:70345538 chrX:70345537 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9282 0 0 1 0 1 MED12 chrX:70345513 3'AG 70345513 Downstream 25bp 8793 chr18 56390422 56390422 1 + T G SKCM 56390423 + 56390403 56390443 41 TTTCACTGTTGGATCTTACTGAATATGAGATGCGTAATGCT TTTCACTGTTGGATCTTACGGAATATGAGATGCGTAATGCT < 41bp 0.880029824426996 0.646641379243043 NA NA prediction 0.466776890367907 Functional Loss - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56390423 chr18:56390422 synonymous SNV . 0 20 hm7G_associated_SNPs_9283 0 0 1 0 1 MALT1 chr18:56390483 5'GT 56390483 Upstream 62bp 8794 chr5 137754692 137754692 1 + T G OV 137754693 + 137754673 137754713 41 GAAACGAAACTACCTTCTCTGGTGGAGGAGGACCGGCACCA GAAACGAAACTACCTTCTCGGGTGGAGGAGGACCGGCACCA < 41bp 0.891883989109371 0.658522904057848 NA NA prediction 0.466722170103048 Functional Loss - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137754693 chr5:137754692 synonymous SNV . 0 20 hm7G_associated_SNPs_9285 0 0 1 0 1 KDM3B chr5:137754642 3'AG 137754642 Downstream 51bp 8795 chr5 169026135 169026135 1 + T G UCEC 169026136 + 169026116 169026156 41 AACTGAGAGCTAAACTAGATGAATTGAAACTAAAATATGAA AACTGAGAGCTAAACTAGAGGAATTGAAACTAAAATATGAA < 41bp 0.868462444202426 0.635116113394437 NA NA prediction 0.466692661615978 Functional Loss - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169026136 chr5:169026135 nonsynonymous SNV 0.934 3 20 hm7G_associated_SNPs_9286 0 0 1 0 1 SPDL1 chr5:169026163 5'GT 169026163 Upstream 29bp 8796 chr1 32681437 32681437 1 + T G BRCA 32681438 + 32681418 32681458 41 GTGGAAGAGGCCTTGTCCCTGGAAAACCAGCCTGGGGCTGG GTGGAAGAGGCCTTGTCCCGGGAAAACCAGCCTGGGGCTGG < 41bp 0.877488646237151 0.64426845098585 NA NA prediction 0.466440390502601 Functional Loss - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32681438 chr1:32681437 nonsynonymous SNV 0.046 0 20 hm7G_associated_SNPs_9288 0 0 0 0 1 DCDC2B chr1:32681403 3'AG 32681403 Downstream 35bp 8797 chr4 980971 980971 1 + T G rs10794537 980972 + 980952 980992 41 AGGCCCCGCACCTGGTGCATGTGGACGCGGCCCGCGCGCTG AGGCCCCGCACCTGGTGCAGGTGGACGCGGCCCGCGCGCTG < 41bp 0.73315948469391 0.418803846764155 NA NA prediction 0.466318969387819 Functional Loss - IDUA ENSG00000127415 CDS Human protein_coding chr4:980972 chr4:980971 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_9290 2 0 1 0 1 IDUA chr4:981030 5'GT 981030 Upstream 60bp 8798 chr7 123254568 123254568 1 + T G UCEC 123254569 + 123254549 123254589 41 ATGCAGGAATGGATACTAATGATGACCCTGATGAAGACCAT ATGCAGGAATGGATACTAAGGATGACCCTGATGAAGACCAT < 41bp 0.872839860981389 0.639685351151153 NA NA prediction 0.466309019660472 Functional Loss - ASB15 ENSG00000146809 CDS Human antisense chr7:123254569 chr7:123254568 nonsynonymous SNV 0.967 0 20 hm7G_associated_SNPs_9291 0 0 0 0 2 LOC102724555 chr7:123254555 3'AG 123254555 Downstream 14bp 8799 chr7 123254568 123254568 1 + T G UCEC 123254569 + 123254549 123254589 41 ATGCAGGAATGGATACTAATGATGACCCTGATGAAGACCAT ATGCAGGAATGGATACTAAGGATGACCCTGATGAAGACCAT < 41bp 0.872839860981389 0.639685351151153 NA NA prediction 0.466309019660472 Functional Loss - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123254569 chr7:123254568 nonsynonymous SNV 0.967 0 20 hm7G_associated_SNPs_9291 0 0 0 0 2 ASB15 chr7:123254663 5'GT 123254663 Upstream 96bp 8800 chr1 231672975 231672975 1 + T G LUAD 231672976 + 231672956 231672996 41 TAGCATTTCAGCAGGAACTTGATGCAAGGCATGACAAATAT TAGCATTTCAGCAGGAACTGGATGCAAGGCATGACAAATAT < 41bp 0.733127282390917 0.416367607210445 NA NA prediction 0.466254564781834 Functional Loss - TSNAX ENSG00000116918;ENSG00000270106 CDS Human other chr1:231672976 chr1:231672975 synonymous SNV . 0 20 hm7G_associated_SNPs_9292 0 0 1 0 2 TSNAX chr1:231672959 3'AG 231672959 Downstream 17bp 8801 chr1 231672975 231672975 1 + T G LUAD 231672976 + 231672956 231672996 41 TAGCATTTCAGCAGGAACTTGATGCAAGGCATGACAAATAT TAGCATTTCAGCAGGAACTGGATGCAAGGCATGACAAATAT < 41bp 0.733127282390917 0.416367607210445 NA NA prediction 0.466254564781834 Functional Loss - TSNAX ENSG00000116918;ENSG00000270106 CDS Human other chr1:231672976 chr1:231672975 synonymous SNV . 0 20 hm7G_associated_SNPs_9292 0 0 1 0 2 TSNAX chr1:231673073 5'GT 231673073 Upstream 99bp 8802 chr9 139751466 139751466 1 + T G LUAD 139751467 + 139751447 139751487 41 CACGGAGTGTCTCAGCTTCTGGTACCACCTCCATGGGCCCC CACGGAGTGTCTCAGCTTCGGGTACCACCTCCATGGGCCCC < 41bp 0.737810441028466 0.5047311280266 NA NA prediction 0.466158626003732 Functional Loss - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751467 chr9:139751466 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_9293 0 0 0 0 1 MAMDC4 chr9:139751493 5'GT 139751493 Upstream 28bp 8803 chrX 2933098 2933098 1 + T G rs143533816 2933099 + 2933079 2933119 41 TTTCACTACTTTTACGGGGTGCCTTTTGGACTTTTAAGCGA TTTCACTACTTTTACGGGGGGCCTTTTGGACTTTTAAGCGA < 41bp 0.733025022533677 0.398097973686397 NA NA prediction 0.466050045067353 Functional Loss - ARSH ENSG00000205667 CDS Human protein_coding chrX:2933099 chrX:2933098 nonsynonymous SNV 0.159 2 20 hm7G_associated_SNPs_9294 0 0 0 0 1 ARSH chrX:2933011 3'AG 2933011 Downstream 88bp 8804 chr3 196454969 196454969 1 + T G SKCM 196454970 + 196454950 196454990 41 GATGGAGAAGCCTCGATTGTGGTCAATAACCCAGATTTGTT GATGGAGAAGCCTCGATTGGGGTCAATAACCCAGATTTGTT < 41bp 0.733010948137002 0.397705198897444 NA NA prediction 0.466021896274004 Functional Loss - PIGX ENSG00000163964 CDS Human protein_coding chr3:196454970 chr3:196454969 nonsynonymous SNV 0.506 3 20 hm7G_associated_SNPs_9295 0 0 1 0 1 PIGX chr3:196455007 5'GT 196455007 Upstream 39bp 8805 chr10 7769038 7769038 1 + T G BRCA 7769039 + 7769019 7769059 41 CAGCTACAAAAACACAGGTTGCAGATGCCAAGAGGTATATT CAGCTACAAAAACACAGGTGGCAGATGCCAAGAGGTATATT < 41bp 0.881141757318235 0.648143202336086 NA NA prediction 0.465997109964298 Functional Loss - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7769039 chr10:7769038 synonymous SNV 0.882 0 20 hm7G_associated_SNPs_9296 0 0 0 0 1 ITIH2 chr10:7769081 5'GT 7769081 Upstream 44bp 8806 chr4 159791570 159791570 1 + T G DLBC 159791571 + 159791551 159791591 41 TGCTTCATGGGACCGGCAGTGATGAGAAGCTGAAGCAGTGC TGCTTCATGGGACCGGCAGGGATGAGAAGCTGAAGCAGTGC < 41bp 0.887710904662143 0.65480287704312 NA NA prediction 0.465816055238045 Functional Loss - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159791571 chr4:159791570 nonsynonymous SNV 0.973 2 20 hm7G_associated_SNPs_9298 0 0 1 0 1 FNIP2 chr4:159791621 5'GT 159791621 Upstream 52bp 8807 chr9 101904867 101904867 1 + T G UCEC 101904868 + 101904848 101904888 41 TGTCAGATTATCATGAGCATGGATCCCTTTTTGATTACTTA TGTCAGATTATCATGAGCAGGGATCCCTTTTTGATTACTTA < 41bp 0.732902922726533 0.400790392657192 NA NA prediction 0.465805845453067 Functional Loss - TGFBR1 ENSG00000106799 CDS Human protein_coding chr9:101904868 chr9:101904867 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9299 0 0 1 0 1 TGFBR1 chr9:101904818 3'AG 101904818 Downstream 50bp 8808 chr6 71571638 71571638 1 - A C OV 71571637 - 71571617 71571657 41 TTTTGTCCAATCCAAAAGCTGTATTTAAGCGTCGTGGATCC TTTTGTCCAATCCAAAAGCGGTATTTAAGCGTCGTGGATCC < 41bp 0.88042315544172 0.647626380761118 NA NA prediction 0.465593549361202 Functional Loss - B3GAT2 ENSG00000112309 CDS Human protein_coding chr6:71571637 chr6:71571638 synonymous SNV . 0 20 hm7G_associated_SNPs_9300 0 0 1 0 1 B3GAT2 chr6:71571681 3'AG 71571681 Downstream 44bp 8809 chr16 23390046 23390046 1 + T G HNSC 23390047 + 23390027 23390067 41 GACTGGATTTTCCACGTCTTGTCTCAGGAGCGGGACCAAAG GACTGGATTTTCCACGTCTGGTCTCAGGAGCGGGACCAAAG < 41bp 0.885605996994149 0.652823488595872 NA NA prediction 0.465565016796553 Functional Loss - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23390047 chr16:23390046 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_9301 0 0 0 0 2 SCNN1B chr16:23390027 3'AG 23390027 Downstream 20bp 8810 chr16 23390046 23390046 1 + T G HNSC 23390047 + 23390027 23390067 41 GACTGGATTTTCCACGTCTTGTCTCAGGAGCGGGACCAAAG GACTGGATTTTCCACGTCTGGTCTCAGGAGCGGGACCAAAG < 41bp 0.885605996994149 0.652823488595872 NA NA prediction 0.465565016796553 Functional Loss - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23390047 chr16:23390046 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_9301 0 0 0 0 2 SCNN1B chr16:23390088 5'GT 23390088 Upstream 43bp 8811 chr11 20515752 20515752 1 + T G COAD 20515753 + 20515733 20515773 41 TCAGAGCACCAAAACACACTGGAAACAAACAGTATTTCTAC TCAGAGCACCAAAACACACGGGAAACAAACAGTATTTCTAC < 41bp 0.883916116921364 0.651186293701181 NA NA prediction 0.465459646440366 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515753 chr11:20515752 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9302 0 0 1 0 2 PRMT3 chr11:20515713 3'AG 20515713 Downstream 40bp 8812 chr11 20515752 20515752 1 + T G COAD 20515753 + 20515733 20515773 41 TCAGAGCACCAAAACACACTGGAAACAAACAGTATTTCTAC TCAGAGCACCAAAACACACGGGAAACAAACAGTATTTCTAC < 41bp 0.883916116921364 0.651186293701181 NA NA prediction 0.465459646440366 Functional Loss - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515753 chr11:20515752 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9302 0 0 1 0 2 PRMT3 chr11:20515800 5'GT 20515800 Upstream 49bp 8813 chr9 131559450 131559450 1 + T G LGG 131559451 + 131559431 131559471 41 AGAGTGGAACAGACAACACTGAAATCTCAGACGGTGGCCCG AGAGTGGAACAGACAACACGGAAATCTCAGACGGTGGCCCG < 41bp 0.89796500288238 0.665330948559212 NA NA prediction 0.465268108646338 Functional Loss - TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131559451 chr9:131559450 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_9304 0 0 1 0 1 TBC1D13 chr9:131559493 5'GT 131559493 Upstream 44bp 8814 chr19 36268762 36268762 1 + T G LGG 36268763 + 36268743 36268783 41 GCCCCTTCCCGCGGCTGGCTGACTGCGCCCATTTCCACTAC GCCCCTTCCCGCGGCTGGCGGACTGCGCCCATTTCCACTAC < 41bp 0.732625343437121 0.407117960199396 NA NA prediction 0.465250686874242 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36268763 chr19:36268762 synonymous SNV . 0 20 hm7G_associated_SNPs_9305 0 0 1 0 2 ARHGAP33 chr19:36268726 3'AG 36268726 Downstream 37bp 8815 chr19 36268762 36268762 1 + T G LGG 36268763 + 36268743 36268783 41 GCCCCTTCCCGCGGCTGGCTGACTGCGCCCATTTCCACTAC GCCCCTTCCCGCGGCTGGCGGACTGCGCCCATTTCCACTAC < 41bp 0.732625343437121 0.407117960199396 NA NA prediction 0.465250686874242 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36268763 chr19:36268762 synonymous SNV . 0 20 hm7G_associated_SNPs_9305 0 0 1 0 2 ARHGAP33 chr19:36268810 5'GT 36268810 Upstream 49bp 8816 chr3 9726900 9726900 1 + T G UCEC 9726901 + 9726881 9726921 41 CCTCCTTTTTTCAGGCACATGTTGGTAGATCGGCTCAGCAA CCTCCTTTTTTCAGGCACAGGTTGGTAGATCGGCTCAGCAA < 41bp 0.886171622652693 0.653569221072354 NA NA prediction 0.465204803160677 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9726901 chr3:9726900 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9306 0 0 1 0 2 MTMR14 chr3:9726895 3'AG 9726895 Downstream 6bp 8817 chr3 9726900 9726900 1 + T G UCEC 9726901 + 9726881 9726921 41 CCTCCTTTTTTCAGGCACATGTTGGTAGATCGGCTCAGCAA CCTCCTTTTTTCAGGCACAGGTTGGTAGATCGGCTCAGCAA < 41bp 0.886171622652693 0.653569221072354 NA NA prediction 0.465204803160677 Functional Loss - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9726901 chr3:9726900 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9306 0 0 1 0 2 MTMR14 chr3:9726931 5'GT 9726931 Upstream 32bp 8818 chr1 179523664 179523664 1 - A C LUSC 179523663 - 179523643 179523683 41 AATTCTTCTTTCCACAGGTTGCCTTGGATTCAGTGACCTGT AATTCTTCTTTCCACAGGTGGCCTTGGATTCAGTGACCTGT < 41bp 0.883813214923949 0.651237954692505 NA NA prediction 0.465150520462889 Functional Loss - NPHS2 ENSG00000116218 CDS Human protein_coding chr1:179523663 chr1:179523664 synonymous SNV . 0 20 hm7G_associated_SNPs_9307 0 0 0 0 2 NPHS2 chr1:179523611 5'GT 179523611 Upstream 54bp 8819 chr1 179523664 179523664 1 - A C LUSC 179523663 - 179523643 179523683 41 AATTCTTCTTTCCACAGGTTGCCTTGGATTCAGTGACCTGT AATTCTTCTTTCCACAGGTGGCCTTGGATTCAGTGACCTGT < 41bp 0.883813214923949 0.651237954692505 NA NA prediction 0.465150520462889 Functional Loss - NPHS2 ENSG00000116218 CDS Human protein_coding chr1:179523663 chr1:179523664 synonymous SNV . 0 20 hm7G_associated_SNPs_9307 0 0 0 0 2 NPHS2 chr1:179523666 3'AG 179523666 Downstream 3bp 8820 chr12 71946940 71946940 1 + T G LUAD 71946941 + 71946921 71946961 41 ACCTGTGGCTGGATGACAATGCGTTAACAGAAATCCCCGTC ACCTGTGGCTGGATGACAAGGCGTTAACAGAAATCCCCGTC < 41bp 0.732533789194134 0.391019859965064 NA NA prediction 0.465067578388269 Functional Loss - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71946941 chr12:71946940 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_9308 0 0 1 1 1 LGR5 chr12:71946853 3'AG 71946853 Downstream 88bp 8821 chr6 43167739 43167739 1 + T G OV 43167740 + 43167720 43167760 41 CTATGCTGTGGTGCTCTGCTGCCTGGGAGCAAAAGAGATCC CTATGCTGTGGTGCTCTGCGGCCTGGGAGCAAAAGAGATCC < 41bp 0.732471581330724 0.384163888420197 NA NA prediction 0.464943162661448 Functional Loss - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43167740 chr6:43167739 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_9309 0 0 1 0 1 CUL9 chr6:43167667 3'AG 43167667 Downstream 73bp 8822 chr10 1052974 1052974 1 + T G CHOL 1052975 + 1052955 1052995 41 TAGGCTTGCGATAGGCTTTTGGCTCATCGAGTGGAAACCAA TAGGCTTGCGATAGGCTTTGGGCTCATCGAGTGGAAACCAA < 41bp 0.891939058671586 0.659488007563634 NA NA prediction 0.464902102215903 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1052975 chr10:1052974 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_9311 0 0 1 0 2 GTPBP4 chr10:1052958 3'AG 1052958 Downstream 17bp 8823 chr10 1052974 1052974 1 + T G CHOL 1052975 + 1052955 1052995 41 TAGGCTTGCGATAGGCTTTTGGCTCATCGAGTGGAAACCAA TAGGCTTGCGATAGGCTTTGGGCTCATCGAGTGGAAACCAA < 41bp 0.891939058671586 0.659488007563634 NA NA prediction 0.464902102215903 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1052975 chr10:1052974 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_9311 0 0 1 0 2 GTPBP4 chr10:1053068 5'GT 1053068 Upstream 95bp 8824 chr10 35500244 35500244 1 + T G UCEC 35500245 + 35500225 35500265 41 AAATGTCTTGAAAATCGTGTGGCTGTGCTTGAAAACCAAAA AAATGTCTTGAAAATCGTGGGGCTGTGCTTGAAAACCAAAA < 41bp 0.812168810354616 0.579826993766639 NA NA prediction 0.464683633175954 Functional Loss - CREM ENSG00000095794 CDS Human protein_coding chr10:35500245 chr10:35500244 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9313 0 0 1 0 1 CREM chr10:35500182 3'AG 35500182 Downstream 63bp 8825 chr11 118963477 118963477 1 + T G COAD 118963478 + 118963458 118963498 41 CTTGTTACAGGAAGGAGGCTGCAGTGTGCCAGTAGCCGTGC CTTGTTACAGGAAGGAGGCGGCAGTGTGCCAGTAGCCGTGC < 41bp 0.823772881089535 0.591447570081545 NA NA prediction 0.46465062201598 Functional Loss - HMBS ENSG00000256269 CDS Human protein_coding chr11:118963478 chr11:118963477 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9314 0 0 1 0 1 HMBS chr11:118963468 3'AG 118963468 Downstream 10bp 8826 chr17 18001661 18001661 1 + T G UCEC 18001662 + 18001642 18001682 41 CCACTCTGACGTGTATTCCTGGGGTCATTGAAGTAAGTGGG CCACTCTGACGTGTATTCCGGGGGTCATTGAAGTAAGTGGG < 41bp 0.894052404636895 0.661758290426962 NA NA prediction 0.464588228419865 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18001662 chr17:18001661 synonymous SNV . 0 20 hm7G_associated_SNPs_9315 0 0 1 0 2 DRG2 chr17:18001584 3'AG 18001584 Downstream 78bp 8827 chr17 18001661 18001661 1 + T G UCEC 18001662 + 18001642 18001682 41 CCACTCTGACGTGTATTCCTGGGGTCATTGAAGTAAGTGGG CCACTCTGACGTGTATTCCGGGGGTCATTGAAGTAAGTGGG < 41bp 0.894052404636895 0.661758290426962 NA NA prediction 0.464588228419865 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18001662 chr17:18001661 synonymous SNV . 0 20 hm7G_associated_SNPs_9315 0 0 1 0 2 DRG2 chr17:18001673 5'GT 18001673 Upstream 13bp 8828 chr3 41266635 41266635 1 + T G READ 41266636 + 41266616 41266656 41 ACTTGATTAACTATCAAGATGATGCAGAACTTGCCACACGT ACTTGATTAACTATCAAGAGGATGCAGAACTTGCCACACGT < 41bp 0.869415925450302 0.637137473935126 NA NA prediction 0.464556903030351 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41266636 chr3:41266635 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9316 0 0 1 0 1 CTNNB1 chr3:41266698 5'GT 41266698 Upstream 64bp 8829 chr1 159275950 159275950 1 + T G LUSC 159275951 + 159275931 159275971 41 CCATTACAAATGCCACAGTTGAAGACAGTGGAACCTACTAC CCATTACAAATGCCACAGTGGAAGACAGTGGAACCTACTAC < 41bp 0.874009189291166 0.641783014551701 NA NA prediction 0.464452349478931 Functional Loss - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159275951 chr1:159275950 synonymous SNV . 0 20 hm7G_associated_SNPs_9317 0 0 0 0 1 FCER1A chr1:159276035 5'GT 159276035 Upstream 86bp 8830 chr1 10238793 10238793 1 + T G STAD 10238794 + 10238774 10238814 41 GCAATAGAAAAATTTAAGCTGCTCGCCGAGAAAGTGGAGGA GCAATAGAAAAATTTAAGCGGCTCGCCGAGAAAGTGGAGGA < 41bp 0.891640146905086 0.659488747139254 NA NA prediction 0.464302799531664 Functional Loss - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10238794 chr1:10238793 nonsynonymous SNV 0.814 1 20 hm7G_associated_SNPs_9318 0 0 1 0 1 UBE4B chr1:10238702 3'AG 10238702 Downstream 92bp 8831 chr11 60785395 60785395 1 + T G rs148566267 60785396 + 60785376 60785416 41 CAAAAGCAAGCTGCCTCCATGGAACCCCCAGGTGTTTTCTT CAAAAGCAAGCTGCCTCCAGGGAACCCCCAGGTGTTTTCTT < 41bp 0.732115545576113 0.386042986356518 NA NA prediction 0.464231091152225 Functional Loss - CD6 ENSG00000013725 CDS Human protein_coding chr11:60785396 chr11:60785395 nonsynonymous SNV 0.371 3 20 hm7G_associated_SNPs_9319 0 0 0 0 1 CD6 chr11:60785485 5'GT 60785485 Upstream 91bp 8832 chr1 908301 908301 1 + T G COAD 908302 + 908282 908322 41 GACCAGCTGGGACTCGGGGTGCTTGGCGCCCCCCTCCACCC GACCAGCTGGGACTCGGGGGGCTTGGCGCCCCCCTCCACCC < 41bp 0.732078821292189 0.384190413110282 NA NA prediction 0.464157642584379 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:908302 chr1:908301 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_9320 0 0 0 0 2 PLEKHN1 chr1:908241 3'AG 908241 Downstream 61bp 8833 chr1 908301 908301 1 + T G COAD 908302 + 908282 908322 41 GACCAGCTGGGACTCGGGGTGCTTGGCGCCCCCCTCCACCC GACCAGCTGGGACTCGGGGGGCTTGGCGCCCCCCTCCACCC < 41bp 0.732078821292189 0.384190413110282 NA NA prediction 0.464157642584379 Functional Loss - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:908302 chr1:908301 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_9320 0 0 0 0 2 PLEKHN1 chr1:908390 5'GT 908390 Upstream 90bp 8834 chr14 21550623 21550623 1 + T G UCEC 21550624 + 21550604 21550644 41 CCCCCTACGCATTGGGGCCTGCTTCCTTCGCCACGTGAGTG CCCCCTACGCATTGGGGCCGGCTTCCTTCGCCACGTGAGTG < 41bp 0.731997795077129 0.389673239649829 NA NA prediction 0.463995590154258 Functional Loss - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21550624 chr14:21550623 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9321 0 0 1 0 1 ARHGEF40 chr14:21550637 5'GT 21550637 Upstream 15bp 8835 chr13 58240870 58240870 1 + T G SKCM 58240871 + 58240851 58240891 41 ACAGTGATCAGGCTGACAGTGACCAAGACACTAACAAAGGC ACAGTGATCAGGCTGACAGGGACCAAGACACTAACAAAGGC < 41bp 0.731986196034338 0.409791691604474 NA NA prediction 0.463972392068676 Functional Loss - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58240871 chr13:58240870 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9322 0 0 1 0 3 PCDH17 chr13:58240795 3'AG 58240795 Downstream 76bp 8836 chr13 58240870 58240870 1 + T G SKCM 58240871 + 58240851 58240891 41 ACAGTGATCAGGCTGACAGTGACCAAGACACTAACAAAGGC ACAGTGATCAGGCTGACAGGGACCAAGACACTAACAAAGGC < 41bp 0.731986196034338 0.409791691604474 NA NA prediction 0.463972392068676 Functional Loss - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58240871 chr13:58240870 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9322 0 0 1 0 3 PCDH17 chr13:58240798 3'AG 58240798 Downstream 73bp 8837 chr13 58240870 58240870 1 + T G SKCM 58240871 + 58240851 58240891 41 ACAGTGATCAGGCTGACAGTGACCAAGACACTAACAAAGGC ACAGTGATCAGGCTGACAGGGACCAAGACACTAACAAAGGC < 41bp 0.731986196034338 0.409791691604474 NA NA prediction 0.463972392068676 Functional Loss - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58240871 chr13:58240870 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9322 0 0 1 0 3 PCDH17 chr13:58240967 5'GT 58240967 Upstream 98bp 8838 chr7 99751490 99751490 1 + T G UCEC 99751491 + 99751471 99751511 41 AGGTGTGTCTCTCCTCCAGTGGTCTTTGGAGAACACACACT AGGTGTGTCTCTCCTCCAGGGGTCTTTGGAGAACACACACT < 41bp 0.807883446024908 0.575938441788652 NA NA prediction 0.463890008472511 Functional Loss - LAMTOR4 ENSG00000188186 CDS Human protein_coding chr7:99751491 chr7:99751490 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9326 0 0 1 0 1 LAMTOR4 chr7:99751490 3'AG 99751490 Downstream 1bp 8839 chr11 124742917 124742917 1 + T G HNSC 124742918 + 124742898 124742938 41 ATGGAAGAAGGATGGGCAGTGGCTGCAGGGGGATGACCTCC ATGGAAGAAGGATGGGCAGGGGCTGCAGGGGGATGACCTCC < 41bp 0.903937731906416 0.672060814565513 NA NA prediction 0.463753834681807 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124742918 chr11:124742917 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_9328 0 0 0 0 1 ROBO3 chr11:124742985 5'GT 124742985 Upstream 69bp 8840 chr12 83290352 83290352 1 + T G COAD 83290353 + 83290333 83290373 41 TTTTTTATGGACTCAAGACTGCGATCAGGAATGGAGACTGG TTTTTTATGGACTCAAGACGGCGATCAGGAATGGAGACTGG < 41bp 0.731780651199275 0.417130600543286 NA NA prediction 0.463561302398549 Functional Loss - TMTC2 ENSG00000179104 CDS Human protein_coding chr12:83290353 chr12:83290352 synonymous SNV . 0 20 hm7G_associated_SNPs_9332 0 0 1 0 1 TMTC2 chr12:83290425 5'GT 83290425 Upstream 74bp 8841 chr11 119148932 119148932 1 + T G GBM 119148933 + 119148913 119148953 41 TCCAACTATGTAAAATATGTGCTGAAAATGATAAGGATGTA TCCAACTATGTAAAATATGGGCTGAAAATGATAAGGATGTA < 41bp 0.879358407361269 0.647603358982547 NA NA prediction 0.463510096757444 Functional Loss - CBL ENSG00000110395 CDS Human protein_coding chr11:119148933 chr11:119148932 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9333 0 0 1 0 2 CBL chr11:119148876 3'AG 119148876 Downstream 57bp 8842 chr11 119148932 119148932 1 + T G GBM 119148933 + 119148913 119148953 41 TCCAACTATGTAAAATATGTGCTGAAAATGATAAGGATGTA TCCAACTATGTAAAATATGGGCTGAAAATGATAAGGATGTA < 41bp 0.879358407361269 0.647603358982547 NA NA prediction 0.463510096757444 Functional Loss - CBL ENSG00000110395 CDS Human protein_coding chr11:119148933 chr11:119148932 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9333 0 0 1 0 2 CBL chr11:119149007 5'GT 119149007 Upstream 76bp 8843 chr19 4234688 4234688 1 + T G PRAD 4234689 + 4234669 4234709 41 CCCGACCCTCCAGAAGGCGTGCGCCTAAGCCCCCTCGCTGA CCCGACCCTCCAGAAGGCGGGCGCCTAAGCCCCCTCGCTGA < 41bp 0.897421293862188 0.665692657316591 NA NA prediction 0.463457273091193 Functional Loss - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4234689 chr19:4234688 nonsynonymous SNV 0.143 3 20 hm7G_associated_SNPs_9334 0 0 0 0 1 EBI3 chr19:4234664 3'AG 4234664 Downstream 25bp 8844 chr19 6921773 6921773 1 + T G LUAD 6921774 + 6921754 6921794 41 GTTTCCTGGAGCACTGATGTGAAGGGTGGAAGATGGACATC GTTTCCTGGAGCACTGATGGGAAGGGTGGAAGATGGACATC < 41bp 0.892164976195054 0.660438621827418 NA NA prediction 0.463452708735272 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6921774 chr19:6921773 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_9335 0 0 0 0 1 ADGRE1 chr19:6921724 3'AG 6921724 Downstream 50bp 8845 chr4 76995895 76995895 1 + T G rs189337908 76995896 + 76995876 76995916 41 ACATCCCATCCTGAAGACTTGCTTACCACAACTGAGAGTGG ACATCCCATCCTGAAGACTGGCTTACCACAACTGAGAGTGG < 41bp 0.731708091501845 0.461932038953708 NA NA prediction 0.46341618300369 Functional Loss - ART3 ENSG00000156219 UTR5 Human protein_coding chr4:76995896 chr4:76995895 . . 0 20 hm7G_associated_SNPs_9336 0 0 0 0 1 ART3 chr4:76995972 5'GT 76995972 Upstream 78bp 8846 chr5 61649119 61649119 1 + T G BLCA 61649120 + 61649100 61649140 41 AGCACGTAGAAAATCTAATTGTGTGAAAGAAGTAGAAAAAC AGCACGTAGAAAATCTAATGGTGTGAAAGAAGTAGAAAAAC < 41bp 0.731644408251543 0.412176195423453 NA NA prediction 0.463288816503086 Functional Loss - KIF2A ENSG00000068796 CDS Human protein_coding chr5:61649120 chr5:61649119 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9337 0 0 1 0 3 KIF2A chr5:61649084 3'AG 61649084 Downstream 36bp 8847 chr5 61649119 61649119 1 + T G BLCA 61649120 + 61649100 61649140 41 AGCACGTAGAAAATCTAATTGTGTGAAAGAAGTAGAAAAAC AGCACGTAGAAAATCTAATGGTGTGAAAGAAGTAGAAAAAC < 41bp 0.731644408251543 0.412176195423453 NA NA prediction 0.463288816503086 Functional Loss - KIF2A ENSG00000068796 CDS Human protein_coding chr5:61649120 chr5:61649119 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9337 0 0 1 0 3 KIF2A chr5:61649102 3'AG 61649102 Downstream 18bp 8848 chr5 61649119 61649119 1 + T G BLCA 61649120 + 61649100 61649140 41 AGCACGTAGAAAATCTAATTGTGTGAAAGAAGTAGAAAAAC AGCACGTAGAAAATCTAATGGTGTGAAAGAAGTAGAAAAAC < 41bp 0.731644408251543 0.412176195423453 NA NA prediction 0.463288816503086 Functional Loss - KIF2A ENSG00000068796 CDS Human protein_coding chr5:61649120 chr5:61649119 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9337 0 0 1 0 3 KIF2A chr5:61649202 5'GT 61649202 Upstream 84bp 8849 chr5 156721794 156721794 1 + T G SKCM 156721795 + 156721775 156721815 41 CTGTTTTACCATTTCAGAATGAGATGCTGGAGGAAGGACAT CTGTTTTACCATTTCAGAAGGAGATGCTGGAGGAAGGACAT < 41bp 0.731644060176889 0.394903241218744 NA NA prediction 0.463288120353778 Functional Loss - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156721795 chr5:156721794 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9338 0 0 1 0 1 CYFIP2 chr5:156721792 3'AG 156721792 Downstream 3bp 8850 chr7 100187601 100187601 1 + T G SKCM 100187602 + 100187582 100187622 41 GCACCCCTTCTTGGGTAGGTGAAGAGAAGCTGCCCTTCTTG GCACCCCTTCTTGGGTAGGGGAAGAGAAGCTGCCCTTCTTG < 41bp 0.731490052513035 0.3959164423544 NA NA prediction 0.46298010502607 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187602 chr7:100187601 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9341 0 0 0 0 2 FBXO24 chr7:100187600 3'AG 100187600 Downstream 2bp 8851 chr7 100187601 100187601 1 + T G SKCM 100187602 + 100187582 100187622 41 GCACCCCTTCTTGGGTAGGTGAAGAGAAGCTGCCCTTCTTG GCACCCCTTCTTGGGTAGGGGAAGAGAAGCTGCCCTTCTTG < 41bp 0.731490052513035 0.3959164423544 NA NA prediction 0.46298010502607 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187602 chr7:100187601 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9341 0 0 0 0 2 FBXO24 chr7:100187698 5'GT 100187698 Upstream 98bp 8852 chr9 135962262 135962262 1 + T G UCEC 135962263 + 135962243 135962283 41 CTGGAGATCACCAAGAAGATGGGCAGCAGCTCCATGAAGCG CTGGAGATCACCAAGAAGAGGGGCAGCAGCTCCATGAAGCG < 41bp 0.731341779786684 0.438547722206236 NA NA prediction 0.462683559573369 Functional Loss - CELP ENSG00000170827 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:135962263 chr9:135962262 . . 0 20 hm7G_associated_SNPs_9342 0 0 0 0 1 CELP chr9:135962173 3'AG 135962173 Downstream 90bp 8853 chr1 35575900 35575900 1 + T G OV 35575901 + 35575881 35575921 41 TAATCTCTAAACAGAAACCTGCCAAACCACTTATATCTGTT TAATCTCTAAACAGAAACCGGCCAAACCACTTATATCTGTT < 41bp 0.731332387371106 0.492694556277819 NA NA prediction 0.462664774742212 Functional Loss - ZMYM1 ENSG00000197056 CDS Human protein_coding chr1:35575901 chr1:35575900 synonymous SNV . 0 20 hm7G_associated_SNPs_9343 0 0 0 0 1 ZMYM1 chr1:35575895 3'AG 35575895 Downstream 6bp 8854 chr4 71895091 71895091 1 + T G LUSC 71895092 + 71895072 71895112 41 AAAGAGTTTTTGAGTACTTTGTGATCTTGCTGAAGACTACA AAAGAGTTTTTGAGTACTTGGTGATCTTGCTGAAGACTACA < 41bp 0.731213539688947 0.423048314390835 NA NA prediction 0.462427079377893 Functional Loss - DCK ENSG00000156136 CDS Human protein_coding chr4:71895092 chr4:71895091 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_9346 0 0 1 0 1 DCK chr4:71895069 3'AG 71895069 Downstream 23bp 8855 chr4 85555035 85555035 1 + T G GBM 85555036 + 85555016 85555056 41 TGGACTCATGTCACTTTACTGATAACTGTCACTCAGTCACA TGGACTCATGTCACTTTACGGATAACTGTCACTCAGTCACA < 41bp 0.731208049118702 0.401559345489902 NA NA prediction 0.462416098237403 Functional Loss - CDS1 ENSG00000163624 CDS Human protein_coding chr4:85555036 chr4:85555035 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9347 0 0 0 0 2 CDS1 chr4:85555010 3'AG 85555010 Downstream 26bp 8856 chr4 85555035 85555035 1 + T G GBM 85555036 + 85555016 85555056 41 TGGACTCATGTCACTTTACTGATAACTGTCACTCAGTCACA TGGACTCATGTCACTTTACGGATAACTGTCACTCAGTCACA < 41bp 0.731208049118702 0.401559345489902 NA NA prediction 0.462416098237403 Functional Loss - CDS1 ENSG00000163624 CDS Human protein_coding chr4:85555036 chr4:85555035 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9347 0 0 0 0 2 CDS1 chr4:85555092 5'GT 85555092 Upstream 58bp 8857 chr1 160385911 160385911 1 + T G LUAD 160385912 + 160385892 160385932 41 GGCCGAGGGGACAAGTCGGTGACAATCCAGGCTCCCGGGGA GGCCGAGGGGACAAGTCGGGGACAATCCAGGCTCCCGGGGA < 41bp 0.73118972414382 0.384187352603108 NA NA prediction 0.46237944828764 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385912 chr1:160385911 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9348 0 0 0 0 2 VANGL2 chr1:160385852 3'AG 160385852 Downstream 60bp 8858 chr1 160385911 160385911 1 + T G LUAD 160385912 + 160385892 160385932 41 GGCCGAGGGGACAAGTCGGTGACAATCCAGGCTCCCGGGGA GGCCGAGGGGACAAGTCGGGGACAATCCAGGCTCCCGGGGA < 41bp 0.73118972414382 0.384187352603108 NA NA prediction 0.46237944828764 Functional Loss - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385912 chr1:160385911 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9348 0 0 0 0 2 VANGL2 chr1:160385972 5'GT 160385972 Upstream 62bp 8859 chr5 147803655 147803655 1 + T G UCEC 147803656 + 147803636 147803676 41 ACAGCCAGGCAATTATTCCTGTGGATGTTGATGAGGAACAA ACAGCCAGGCAATTATTCCGGTGGATGTTGATGAGGAACAA < 41bp 0.731183931689683 0.39949983840094 NA NA prediction 0.462367863379367 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147803656 chr5:147803655 synonymous SNV . 0 20 hm7G_associated_SNPs_9349 0 0 1 0 2 FBXO38 chr5:147803561 3'AG 147803561 Downstream 95bp 8860 chr5 147803655 147803655 1 + T G UCEC 147803656 + 147803636 147803676 41 ACAGCCAGGCAATTATTCCTGTGGATGTTGATGAGGAACAA ACAGCCAGGCAATTATTCCGGTGGATGTTGATGAGGAACAA < 41bp 0.731183931689683 0.39949983840094 NA NA prediction 0.462367863379367 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147803656 chr5:147803655 synonymous SNV . 0 20 hm7G_associated_SNPs_9349 0 0 1 0 2 FBXO38 chr5:147803680 5'GT 147803680 Upstream 26bp 8861 chr1 231406559 231406559 1 + T G rs567001651 231406560 + 231406540 231406580 41 TTCTTCTGCATTCCAACATTGCCAGCCTTGTCAAAGACCAG TTCTTCTGCATTCCAACATGGCCAGCCTTGTCAAAGACCAG < 41bp 0.731176813526642 0.406882925183997 NA NA prediction 0.462353627053284 Functional Loss - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231406560 chr1:231406559 nonsynonymous SNV 0.065 2 20 hm7G_associated_SNPs_9350 0 0 1 0 1 GNPAT chr1:231406504 3'AG 231406504 Downstream 56bp 8862 chr7 102579980 102579980 1 + T G SKCM 102579981 + 102579961 102580001 41 AGGAATTTGAAGATGTTCATGAGCTGAAGAAATTAAACCTC AGGAATTTGAAGATGTTCAGGAGCTGAAGAAATTAAACCTC < 41bp 0.874850067113939 0.643756113403038 NA NA prediction 0.462187907421802 Functional Loss - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102579981 chr7:102579980 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_9351 0 0 0 0 1 LRRC17 chr7:102580032 5'GT 102580032 Upstream 53bp 8863 chr8 38810883 38810883 1 + T G STAD 38810884 + 38810864 38810904 41 ATGAATGTCTGGTCAAGTCTGGGTAATTGTGTCTGCTTTTT ATGAATGTCTGGTCAAGTCGGGGTAATTGTGTCTGCTTTTT < 41bp 0.731073309334154 0.404759072827888 NA NA prediction 0.462146618668309 Functional Loss - PLEKHA2 ENSG00000169499 CDS Human protein_coding chr8:38810884 chr8:38810883 synonymous SNV . 0 20 hm7G_associated_SNPs_9352 0 0 1 0 2 PLEKHA2 chr8:38810815 3'AG 38810815 Downstream 69bp 8864 chr8 38810883 38810883 1 + T G STAD 38810884 + 38810864 38810904 41 ATGAATGTCTGGTCAAGTCTGGGTAATTGTGTCTGCTTTTT ATGAATGTCTGGTCAAGTCGGGGTAATTGTGTCTGCTTTTT < 41bp 0.731073309334154 0.404759072827888 NA NA prediction 0.462146618668309 Functional Loss - PLEKHA2 ENSG00000169499 CDS Human protein_coding chr8:38810884 chr8:38810883 synonymous SNV . 0 20 hm7G_associated_SNPs_9352 0 0 1 0 2 PLEKHA2 chr8:38810885 5'GT 38810885 Upstream 3bp 8865 chr20 21227160 21227160 1 + T G UCEC 21227161 + 21227141 21227181 41 GTAACTCAGAAATTGAGGCTGCTTTACGCCCCAGAAACCAT GTAACTCAGAAATTGAGGCGGCTTTACGCCCCAGAAACCAT < 41bp 0.853755744011441 0.622737021099376 NA NA prediction 0.462037445824128 Functional Loss - KIZ ENSG00000088970 ncRNA_exonic Human protein_coding chr20:21227161 chr20:21227160 . . 0 20 hm7G_associated_SNPs_9353 0 0 1 4 1 KIZ chr20:21227117 3'AG 21227117 Downstream 44bp 8866 chr20 42885826 42885826 1 + T G SKCM 42885827 + 42885807 42885847 41 CGCCGAGAAGGGCCTGGTGTGCGAGGAGCGGGACGTGAGCC CGCCGAGAAGGGCCTGGTGGGCGAGGAGCGGGACGTGAGCC < 41bp 0.895615911589044 0.664762723844463 NA NA prediction 0.461706375489162 Functional Loss - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42885827 chr20:42885826 nonsynonymous SNV 0.420 3 20 hm7G_associated_SNPs_9355 0 0 0 0 1 GDAP1L1 chr20:42885793 3'AG 42885793 Downstream 34bp 8867 chr20 45355503 45355503 1 + T G SKCM 45355504 + 45355484 45355524 41 TCCTGCTCTCCCACCCTAGTGACCTGGCTTGTCCTCAGCGA TCCTGCTCTCCCACCCTAGGGACCTGGCTTGTCCTCAGCGA < 41bp 0.730852568224501 0.386525930510898 NA NA prediction 0.461705136449001 Functional Loss - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355504 chr20:45355503 nonsynonymous SNV 0.946 2 20 hm7G_associated_SNPs_9356 0 0 0 0 1 SLC2A10 chr20:45355503 3'AG 45355503 Downstream 1bp 8868 chr19 2214581 2214581 1 + T G LUAD 2214582 + 2214562 2214602 41 CTCGGAGAAGCAGAGGCACTGCCTGGAGCTGCAGGTGGGCT CTCGGAGAAGCAGAGGCACGGCCTGGAGCTGCAGGTGGGCT < 41bp 0.730821388436034 0.406627442433462 NA NA prediction 0.461642776872067 Functional Loss - DOT1L ENSG00000104885 CDS Human protein_coding chr19:2214582 chr19:2214581 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9357 0 0 1 0 1 DOT1L chr19:2214595 5'GT 2214595 Upstream 15bp 8869 chr14 74426168 74426168 1 - A C HNSC 74426167 - 74426147 74426187 41 CCATGCTAACTAGCTCTGCTGCATGTTCATGGGACGTGGAC CCATGCTAACTAGCTCTGCGGCATGTTCATGGGACGTGGAC < 41bp 0.879388779209368 0.648663861955333 NA NA prediction 0.46144983450807 Functional Loss - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74426167 chr14:74426168 synonymous SNV . 0 20 hm7G_associated_SNPs_9360 0 0 0 0 1 ENTPD5 chr14:74426256 3'AG 74426256 Downstream 89bp 8870 chr16 53320220 53320220 1 + T G KIRC 53320221 + 53320201 53320241 41 AACCTGATGAGAAAGCAGTTGCTGCTGAACAGAGAGCGAAT AACCTGATGAGAAAGCAGTGGCTGCTGAACAGAGAGCGAAT < 41bp 0.730624664482769 0.414653529730114 NA NA prediction 0.461249328965538 Functional Loss - CHD9 ENSG00000177200 CDS Human protein_coding chr16:53320221 chr16:53320220 synonymous SNV . 0 20 hm7G_associated_SNPs_9362 0 0 1 0 2 CHD9 chr16:53320138 3'AG 53320138 Downstream 83bp 8871 chr16 53320220 53320220 1 + T G KIRC 53320221 + 53320201 53320241 41 AACCTGATGAGAAAGCAGTTGCTGCTGAACAGAGAGCGAAT AACCTGATGAGAAAGCAGTGGCTGCTGAACAGAGAGCGAAT < 41bp 0.730624664482769 0.414653529730114 NA NA prediction 0.461249328965538 Functional Loss - CHD9 ENSG00000177200 CDS Human protein_coding chr16:53320221 chr16:53320220 synonymous SNV . 0 20 hm7G_associated_SNPs_9362 0 0 1 0 2 CHD9 chr16:53320255 5'GT 53320255 Upstream 36bp 8872 chr1 150915445 150915445 1 + T G LUSC 150915446 + 150915426 150915466 41 CTGTATGTGGGCAGTCGGGTGGTCGCCAAATACAAAGATGG CTGTATGTGGGCAGTCGGGGGGTCGCCAAATACAAAGATGG < 41bp 0.730573565238217 0.386303232185795 NA NA prediction 0.461147130476433 Functional Loss - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150915446 chr1:150915445 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_9364 0 0 1 0 1 SETDB1 chr1:150915529 5'GT 150915529 Upstream 85bp 8873 chr7 116409761 116409761 1 + T G PRAD 116409762 + 116409742 116409782 41 AAGTTGGAAATAAGAGCTGTGAGAATATACACTTACATTCT AAGTTGGAAATAAGAGCTGGGAGAATATACACTTACATTCT < 41bp 0.730563602717365 0.423739030176222 NA NA prediction 0.461127205434731 Functional Loss - MET ENSG00000105976 CDS Human protein_coding chr7:116409762 chr7:116409761 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_9365 0 0 1 0 2 MET chr7:116409699 3'AG 116409699 Downstream 63bp 8874 chr7 116409761 116409761 1 + T G PRAD 116409762 + 116409742 116409782 41 AAGTTGGAAATAAGAGCTGTGAGAATATACACTTACATTCT AAGTTGGAAATAAGAGCTGGGAGAATATACACTTACATTCT < 41bp 0.730563602717365 0.423739030176222 NA NA prediction 0.461127205434731 Functional Loss - MET ENSG00000105976 CDS Human protein_coding chr7:116409762 chr7:116409761 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_9365 0 0 1 0 2 MET chr7:116409845 5'GT 116409845 Upstream 85bp 8875 chr16 84230345 84230345 1 + T G LUAD 84230346 + 84230326 84230366 41 GTGGGGAAGCCCTACCTCCTGGCCTTGAAGACCTACGAGGC GTGGGGAAGCCCTACCTCCGGGCCTTGAAGACCTACGAGGC < 41bp 0.890650335449616 0.660130810122207 NA NA prediction 0.461039050654818 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230346 chr16:84230345 nonsynonymous SNV 0.192 4 20 hm7G_associated_SNPs_9366 0 0 0 0 2 ADAD2 chr16:84230253 3'AG 84230253 Downstream 93bp 8876 chr16 84230345 84230345 1 + T G LUAD 84230346 + 84230326 84230366 41 GTGGGGAAGCCCTACCTCCTGGCCTTGAAGACCTACGAGGC GTGGGGAAGCCCTACCTCCGGGCCTTGAAGACCTACGAGGC < 41bp 0.890650335449616 0.660130810122207 NA NA prediction 0.461039050654818 Functional Loss - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84230346 chr16:84230345 nonsynonymous SNV 0.192 4 20 hm7G_associated_SNPs_9366 0 0 0 0 2 ADAD2 chr16:84230373 5'GT 84230373 Upstream 29bp 8877 chr1 158225830 158225830 1 + T G LUSC 158225831 + 158225811 158225851 41 GTGACAGGAGGCTGTGAGCTGCACTCTGGAAAGGTCTCAGG GTGACAGGAGGCTGTGAGCGGCACTCTGGAAAGGTCTCAGG < 41bp 0.886431257809867 0.655924216554972 NA NA prediction 0.461014082509791 Functional Loss - CD1A ENSG00000158477 CDS Human protein_coding chr1:158225831 chr1:158225830 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_9367 0 0 0 0 1 CD1A chr1:158225794 3'AG 158225794 Downstream 37bp 8878 chr12 32786521 32786521 1 + T G KIRC 32786522 + 32786502 32786542 41 CCGACTACAAAGCTCAACTTGAATATGATGGTGGTAAATTG CCGACTACAAAGCTCAACTGGAATATGATGGTGGTAAATTG < 41bp 0.730398246963383 0.405971413747148 NA NA prediction 0.460796493926766 Functional Loss - FGD4 ENSG00000139132 CDS Human protein_coding chr12:32786522 chr12:32786521 synonymous SNV . 0 20 hm7G_associated_SNPs_9369 0 0 0 0 1 FGD4 chr12:32786483 3'AG 32786483 Downstream 39bp 8879 chr16 31288261 31288261 1 + T G STAD 31288262 + 31288242 31288282 41 ATGGCCCCTTGCTGAGCACTGTGGGGAGCTATGACTGGGCT ATGGCCCCTTGCTGAGCACGGTGGGGAGCTATGACTGGGCT < 41bp 0.730367629043247 0.394086978604787 NA NA prediction 0.460735258086495 Functional Loss - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31288262 chr16:31288261 synonymous SNV . 0 20 hm7G_associated_SNPs_9371 0 0 0 0 1 ITGAM chr16:31288241 3'AG 31288241 Downstream 21bp 8880 chr1 150479482 150479482 1 + T G LUSC 150479483 + 150479463 150479503 41 TGGGACTTGCCTGAGGCTGTGCAGCGACTGGTGGAGCTACA TGGGACTTGCCTGAGGCTGGGCAGCGACTGGTGGAGCTACA < 41bp 0.880348446865919 0.649992120964522 NA NA prediction 0.460712651802794 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150479483 chr1:150479482 nonsynonymous SNV 0.685 3 20 hm7G_associated_SNPs_9372 0 0 1 0 1 TARS2 chr1:150479392 3'AG 150479392 Downstream 91bp 8881 chr3 9783057 9783057 1 + T G BRCA 9783058 + 9783038 9783078 41 CCTGGCAGCGGCTCCGGCATGACTTGGAGCGAGCTCGGCTG CCTGGCAGCGGCTCCGGCAGGACTTGGAGCGAGCTCGGCTG < 41bp 0.900096360446042 0.669786429453749 NA NA prediction 0.460619861984586 Functional Loss - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9783058 chr3:9783057 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_9373 0 0 0 0 2 BRPF1 chr3:9782992 3'AG 9782992 Downstream 66bp 8882 chr3 9783057 9783057 1 + T G BRCA 9783058 + 9783038 9783078 41 CCTGGCAGCGGCTCCGGCATGACTTGGAGCGAGCTCGGCTG CCTGGCAGCGGCTCCGGCAGGACTTGGAGCGAGCTCGGCTG < 41bp 0.900096360446042 0.669786429453749 NA NA prediction 0.460619861984586 Functional Loss - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9783058 chr3:9783057 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_9373 0 0 0 0 2 BRPF1 chr3:9783123 5'GT 9783123 Upstream 67bp 8883 chr9 2648797 2648797 1 + T G HNSC 2648798 + 2648778 2648818 41 TCATTGTCTATCATGAACTTGTACAGCCATCAGGTACCGTG TCATTGTCTATCATGAACTGGTACAGCCATCAGGTACCGTG < 41bp 0.730178866709489 0.40057208531237 NA NA prediction 0.460357733418977 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2648798 chr9:2648797 synonymous SNV . 0 20 hm7G_associated_SNPs_9376 0 0 0 0 1 VLDLR chr9:2648810 5'GT 2648810 Upstream 14bp 8884 chr18 20570945 20570945 1 + T G STAD 20570946 + 20570926 20570966 41 TGGTGATGAGCTCTACCACTGTCTGGAAGGAAATCACAAGA TGGTGATGAGCTCTACCACGGTCTGGAAGGAAATCACAAGA < 41bp 0.730154834599683 0.393317614631235 NA NA prediction 0.460309669199367 Functional Loss - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20570946 chr18:20570945 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_9377 0 0 1 0 2 RBBP8 chr18:20570900 3'AG 20570900 Downstream 46bp 8885 chr18 20570945 20570945 1 + T G STAD 20570946 + 20570926 20570966 41 TGGTGATGAGCTCTACCACTGTCTGGAAGGAAATCACAAGA TGGTGATGAGCTCTACCACGGTCTGGAAGGAAATCACAAGA < 41bp 0.730154834599683 0.393317614631235 NA NA prediction 0.460309669199367 Functional Loss - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20570946 chr18:20570945 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_9377 0 0 1 0 2 RBBP8 chr18:20571012 5'GT 20571012 Upstream 68bp 8886 chr15 50741617 50741617 1 + T G BRCA 50741618 + 50741598 50741638 41 ATTATTTCCATTCAATACTTGGACCTGGAAACATCAAAAAA ATTATTTCCATTCAATACTGGGACCTGGAAACATCAAAAAA < 41bp 0.730137441060476 0.407796712255295 NA NA prediction 0.460274882120951 Functional Loss - USP8 ENSG00000138592 CDS Human protein_coding chr15:50741618 chr15:50741617 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_9378 0 0 1 0 2 USP8 chr15:50741597 3'AG 50741597 Downstream 21bp 8887 chr15 50741617 50741617 1 + T G BRCA 50741618 + 50741598 50741638 41 ATTATTTCCATTCAATACTTGGACCTGGAAACATCAAAAAA ATTATTTCCATTCAATACTGGGACCTGGAAACATCAAAAAA < 41bp 0.730137441060476 0.407796712255295 NA NA prediction 0.460274882120951 Functional Loss - USP8 ENSG00000138592 CDS Human protein_coding chr15:50741618 chr15:50741617 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_9378 0 0 1 0 2 USP8 chr15:50741682 5'GT 50741682 Upstream 66bp 8888 chr1 48701404 48701404 1 + T G rs193163259 48701405 + 48701385 48701425 41 CCTCGTCTCTCCCCAGGTCTGCGGGGGCTGATGATTGCCGT CCTCGTCTCTCCCCAGGTCGGCGGGGGCTGATGATTGCCGT < 41bp 0.888210378892428 0.658110711534539 NA NA prediction 0.460199334715779 Functional Loss - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48701405 chr1:48701404 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_9379 0 0 1 0 1 SLC5A9 chr1:48701401 3'AG 48701401 Downstream 4bp 8889 chr4 89571136 89571136 1 + T G SKCM 89571137 + 89571117 89571157 41 TCATGACTACTGAGGATTCTGTGGCAGTGCCCAGGTAAGAA TCATGACTACTGAGGATTCGGTGGCAGTGCCCAGGTAAGAA < 41bp 0.730051955899189 0.400799472106975 NA NA prediction 0.460103911798378 Functional Loss - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89571137 chr4:89571136 synonymous SNV . 0 20 hm7G_associated_SNPs_9380 0 0 1 0 1 HERC3 chr4:89571150 5'GT 89571150 Upstream 15bp 8890 chr3 148583124 148583124 1 + T G LUSC 148583125 + 148583105 148583145 41 TCCTGCCTGTGGGTTTGATTGCTACCACTCTTGCAATTGCT TCCTGCCTGTGGGTTTGATGGCTACCACTCTTGCAATTGCT < 41bp 0.72993455806601 0.411976734692565 NA NA prediction 0.459869116132019 Functional Loss - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148583125 chr3:148583124 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_9383 0 0 0 0 1 CPA3 chr3:148583162 5'GT 148583162 Upstream 39bp 8891 chr13 45594503 45594503 1 + T G HNSC 45594504 + 45594484 45594524 41 AGTCATCCAGTAAGAAAGATGAAGAACATATATTATCAGGA AGTCATCCAGTAAGAAAGAGGAAGAACATATATTATCAGGA < 41bp 0.876473685584357 0.646580330716265 NA NA prediction 0.459786709736184 Functional Loss - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45594504 chr13:45594503 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_9384 0 0 1 3 1 GPALPP1 chr13:45594465 3'AG 45594465 Downstream 39bp 8892 chr12 113405379 113405379 1 + T G SKCM 113405380 + 113405360 113405400 41 AAGAGCCTGATCCGGCTGGTGAAGCACTGGTACCAGCAGGT AAGAGCCTGATCCGGCTGGGGAAGCACTGGTACCAGCAGGT < 41bp 0.72985752769786 0.386312808652583 NA NA prediction 0.459715055395721 Functional Loss - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113405380 chr12:113405379 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9386 0 0 0 0 1 OAS3 chr12:113405398 5'GT 113405398 Upstream 20bp 8893 chr11 61504767 61504767 1 + T G SARC 61504768 + 61504748 61504788 41 ATCCGACCCTCAAGTGCTTTGCCTACTCCCCGCCAGGGGGC ATCCGACCCTCAAGTGCTTGGCCTACTCCCCGCCAGGGGGC < 41bp 0.729822482746046 0.364294770323666 NA NA prediction 0.459644965492091 Functional Loss - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61504768 chr11:61504767 nonsynonymous SNV 0.960 1 20 hm7G_associated_SNPs_9387 0 0 1 0 1 DAGLA chr11:61504796 5'GT 61504796 Upstream 30bp 8894 chr16 10841073 10841073 1 + T G LUSC 10841074 + 10841054 10841094 41 TGTCTGGGAAAGGCGGTGTTGGGAAAAGCACATTCAGCGCC TGTCTGGGAAAGGCGGTGTGGGGAAAAGCACATTCAGCGCC < 41bp 0.895450357467686 0.665804914878657 NA NA prediction 0.459290885178057 Functional Loss - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10841074 chr16:10841073 synonymous SNV . 0 20 hm7G_associated_SNPs_9389 0 0 1 0 2 NUBP1 chr16:10841000 3'AG 10841000 Downstream 74bp 8895 chr16 10841073 10841073 1 + T G LUSC 10841074 + 10841054 10841094 41 TGTCTGGGAAAGGCGGTGTTGGGAAAAGCACATTCAGCGCC TGTCTGGGAAAGGCGGTGTGGGGAAAAGCACATTCAGCGCC < 41bp 0.895450357467686 0.665804914878657 NA NA prediction 0.459290885178057 Functional Loss - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10841074 chr16:10841073 synonymous SNV . 0 20 hm7G_associated_SNPs_9389 0 0 1 0 2 NUBP1 chr16:10841133 5'GT 10841133 Upstream 61bp 8896 chr17 26824180 26824180 1 + T G COAD 26824181 + 26824161 26824201 41 CGCACTGGCCATCAACAGCTGGGGCATCCCCCTCTTCAGCC CGCACTGGCCATCAACAGCGGGGGCATCCCCCTCTTCAGCC < 41bp 0.72955936749569 0.40408475579474 NA NA prediction 0.45911873499138 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26824181 chr17:26824180 nonsynonymous SNV 0.934 4 20 hm7G_associated_SNPs_9391 0 0 0 0 1 SLC13A2 chr17:26824117 3'AG 26824117 Downstream 64bp 8897 chr7 44146234 44146234 1 + A G UCS 44146235 + 44146215 44146255 41 GTCCTTGGAGGGGTCCCCCAGGCCGCCCAAGAAGGGGAAGG GTCCTTGGAGGGGTCCCCCGGGCCGCCCAAGAAGGGGAAGG < 41bp 0.729557003294906 0.497511523853247 NA NA prediction 0.459114006589812 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44146235 chr7:44146234 nonsynonymous SNV 0.218 2 20 hm7G_associated_SNPs_9392 0 0 0 0 1 AEBP1 chr7:44146145 3'AG 44146145 Downstream 90bp 8898 chrX 99919868 99919868 1 + T G SKCM 99919869 + 99919849 99919889 41 GTGACTACAGCTGTTCCAGTGGCTACCACCTGGAAGGTGAT GTGACTACAGCTGTTCCAGGGGCTACCACCTGGAAGGTGAT < 41bp 0.899400467008388 0.669961283870271 NA NA prediction 0.458878366276235 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99919869 chrX:99919868 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9395 0 0 0 0 2 SRPX2 chrX:99919771 3'AG 99919771 Downstream 98bp 8899 chrX 99919868 99919868 1 + T G SKCM 99919869 + 99919849 99919889 41 GTGACTACAGCTGTTCCAGTGGCTACCACCTGGAAGGTGAT GTGACTACAGCTGTTCCAGGGGCTACCACCTGGAAGGTGAT < 41bp 0.899400467008388 0.669961283870271 NA NA prediction 0.458878366276235 Functional Loss - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99919869 chrX:99919868 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9395 0 0 0 0 2 SRPX2 chrX:99919947 5'GT 99919947 Upstream 80bp 8900 chr15 41229676 41229676 1 + T G LUSC 41229677 + 41229657 41229697 41 GGGACTCCATGTACCAGTCTGTGTGTTTGATATCAGAGGAG GGGACTCCATGTACCAGTCGGTGTGTTTGATATCAGAGGAG < 41bp 0.72943078053011 0.3994238110264 NA NA prediction 0.458861561060221 Functional Loss - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41229677 chr15:41229676 synonymous SNV . 0 20 hm7G_associated_SNPs_9396 0 0 0 0 2 DLL4 chr15:41229616 3'AG 41229616 Downstream 61bp 8901 chr15 41229676 41229676 1 + T G LUSC 41229677 + 41229657 41229697 41 GGGACTCCATGTACCAGTCTGTGTGTTTGATATCAGAGGAG GGGACTCCATGTACCAGTCGGTGTGTTTGATATCAGAGGAG < 41bp 0.72943078053011 0.3994238110264 NA NA prediction 0.458861561060221 Functional Loss - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41229677 chr15:41229676 synonymous SNV . 0 20 hm7G_associated_SNPs_9396 0 0 0 0 2 DLL4 chr15:41229724 5'GT 41229724 Upstream 49bp 8902 chr8 120431513 120431513 1 + T G LUSC 120431514 + 120431494 120431534 41 CCAATAGGAACCGTCAATGTGAGATGCTGAAACAGACTCGG CCAATAGGAACCGTCAATGGGAGATGCTGAAACAGACTCGG < 41bp 0.886429614005539 0.657132847934006 NA NA prediction 0.458593532143066 Functional Loss - NOV ENSG00000136999 CDS Human protein_coding chr8:120431514 chr8:120431513 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_9399 0 0 0 0 1 NOV chr8:120431585 5'GT 120431585 Upstream 73bp 8903 chr1 89834164 89834164 1 + T G OV 89834165 + 89834145 89834185 41 GCCTGGTGGAAAATAACAATGAGCAGCTATTGGTGAACCAG GCCTGGTGGAAAATAACAAGGAGCAGCTATTGGTGAACCAG < 41bp 0.729271703011508 0.397233165709523 NA NA prediction 0.458543406023016 Functional Loss - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89834165 chr1:89834164 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_9401 0 0 0 0 1 GBP6 chr1:89834088 3'AG 89834088 Downstream 77bp 8904 chrX 77359863 77359863 1 + T G STAD 77359864 + 77359844 77359884 41 CTTTCTAACAAGCTGACGCTGGACAAGCTGGACGTTAAAGG CTTTCTAACAAGCTGACGCGGGACAAGCTGGACGTTAAAGG < 41bp 0.87417792766067 0.645049874139401 NA NA prediction 0.458256107042539 Functional Loss - PGK1 ENSG00000102144 CDS Human protein_coding chrX:77359864 chrX:77359863 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_9402 0 0 1 0 1 PGK1 chrX:77359902 5'GT 77359902 Upstream 40bp 8905 chr3 9959658 9959658 1 + T G BRCA 9959659 + 9959639 9959679 41 GTGCCTGCTCCGGGCCCCGTGCTGGCGCCTACGCACCTGCA GTGCCTGCTCCGGGCCCCGGGCTGGCGCCTACGCACCTGCA < 41bp 0.729123814929402 0.389019325322528 NA NA prediction 0.458247629858803 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959659 chr3:9959658 nonsynonymous SNV 0.904 4 20 hm7G_associated_SNPs_9403 0 0 1 0 2 IL17RC chr3:9959607 3'AG 9959607 Downstream 52bp 8906 chr3 9959658 9959658 1 + T G BRCA 9959659 + 9959639 9959679 41 GTGCCTGCTCCGGGCCCCGTGCTGGCGCCTACGCACCTGCA GTGCCTGCTCCGGGCCCCGGGCTGGCGCCTACGCACCTGCA < 41bp 0.729123814929402 0.389019325322528 NA NA prediction 0.458247629858803 Functional Loss - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9959659 chr3:9959658 nonsynonymous SNV 0.904 4 20 hm7G_associated_SNPs_9403 0 0 1 0 2 IL17RC chr3:9959611 3'AG 9959611 Downstream 48bp 8907 chr11 102206698 102206698 1 + T G UCEC 102206699 + 102206679 102206719 41 GTTTTCTTTTTTATAAAGATGATTTATTATTAATCCGGAAG GTTTTCTTTTTTATAAAGAGGATTTATTATTAATCCGGAAG < 41bp 0.729053350270454 0.427499347836603 NA NA prediction 0.458106700540908 Functional Loss - BIRC3 ENSG00000023445 CDS Human protein_coding chr11:102206699 chr11:102206698 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_9404 0 0 0 0 1 BIRC3 chr11:102206697 3'AG 102206697 Downstream 2bp 8908 chr10 44104153 44104153 1 + T G COAD 44104154 + 44104134 44104174 41 CGGGCCCTGTACAGGGATGTGATGCTGGAGAACTATGGGAA CGGGCCCTGTACAGGGATGGGATGCTGGAGAACTATGGGAA < 41bp 0.889349467966802 0.660373995300694 NA NA prediction 0.457950945332216 Functional Loss - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44104154 chr10:44104153 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_9405 0 0 1 0 2 ZNF485 chr10:44104062 3'AG 44104062 Downstream 92bp 8909 chr10 44104153 44104153 1 + T G COAD 44104154 + 44104134 44104174 41 CGGGCCCTGTACAGGGATGTGATGCTGGAGAACTATGGGAA CGGGCCCTGTACAGGGATGGGATGCTGGAGAACTATGGGAA < 41bp 0.889349467966802 0.660373995300694 NA NA prediction 0.457950945332216 Functional Loss - ZNF485 ENSG00000198298 CDS Human protein_coding chr10:44104154 chr10:44104153 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_9405 0 0 1 0 2 ZNF485 chr10:44104188 5'GT 44104188 Upstream 36bp 8910 chr14 21464975 21464975 1 + T G SKCM 21464976 + 21464956 21464996 41 TTGTGCCCGTGTCAGCTCCTGGGGAGATCTTTTACCTGTGC TTGTGCCCGTGTCAGCTCCGGGGGAGATCTTTTACCTGTGC < 41bp 0.728951260934269 0.406920572332833 NA NA prediction 0.457902521868538 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464976 chr14:21464975 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9408 0 0 1 0 2 METTL17 chr14:21464944 3'AG 21464944 Downstream 32bp 8911 chr14 21464975 21464975 1 + T G SKCM 21464976 + 21464956 21464996 41 TTGTGCCCGTGTCAGCTCCTGGGGAGATCTTTTACCTGTGC TTGTGCCCGTGTCAGCTCCGGGGGAGATCTTTTACCTGTGC < 41bp 0.728951260934269 0.406920572332833 NA NA prediction 0.457902521868538 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464976 chr14:21464975 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9408 0 0 1 0 2 METTL17 chr14:21464971 3'AG 21464971 Downstream 5bp 8912 chr7 79840378 79840378 1 + T G STAD 79840379 + 79840359 79840399 41 TCTTCTGTGTAGCACTGAGTGACTACGACCTGGTTCTAGCT TCTTCTGTGTAGCACTGAGGGACTACGACCTGGTTCTAGCT < 41bp 0.887986457204429 0.659337431003818 NA NA prediction 0.457298052401222 Functional Loss - GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79840379 chr7:79840378 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9412 0 0 1 0 1 GNAI1 chr7:79840285 3'AG 79840285 Downstream 94bp 8913 chr17 6799971 6799971 1 + T G OV 6799972 + 6799952 6799992 41 AGACCTGGGTCCGGAGCTCTGATTTCCAGCTGCAGCAGTTA AGACCTGGGTCCGGAGCTCGGATTTCCAGCTGCAGCAGTTA < 41bp 0.72862755561163 0.43400156187349 NA NA prediction 0.457255111223261 Functional Loss - ALOX12P2 ENSG00000262943 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:6799972 chr17:6799971 . . 0 20 hm7G_associated_SNPs_9414 0 0 0 0 1 ALOX12P2 chr17:6799873 3'AG 6799873 Downstream 99bp 8914 chr1 57383318 57383318 1 + T G PAAD 57383319 + 57383299 57383339 41 CCAGGAAAGGAGAAGAGAGTGTGACAATCCAGCACCTCAGA CCAGGAAAGGAGAAGAGAGGGTGACAATCCAGCACCTCAGA < 41bp 0.728518292646883 0.414936130251107 NA NA prediction 0.457036585293767 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57383319 chr1:57383318 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_9417 0 0 0 0 1 C8A chr1:57383238 3'AG 57383238 Downstream 81bp 8915 chr8 125072527 125072527 1 + T G rs117275600 125072528 + 125072508 125072548 41 GTGCTGAGCAAATACCGAGTGGAGGTACGGGTCAGCGGAGG GTGCTGAGCAAATACCGAGGGGAGGTACGGGTCAGCGGAGG < 41bp 0.7284373174631 0.394378540855987 NA NA prediction 0.456874634926201 Functional Loss - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125072528 chr8:125072527 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9418 0 0 0 0 1 FER1L6 chr8:125072531 5'GT 125072531 Upstream 5bp 8916 chr1 158813136 158813136 1 + T G SARC 158813137 + 158813117 158813157 41 ACCAGGAAGAAGTGGGTCTTGCGGCACCTGCACCCACCGCA ACCAGGAAGAAGTGGGTCTGGCGGCACCTGCACCCACCGCA < 41bp 0.728212193733037 0.397387975521029 NA NA prediction 0.456424387466074 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813137 chr1:158813136 synonymous SNV . 0 20 hm7G_associated_SNPs_9421 0 0 0 0 2 MNDA chr1:158813069 3'AG 158813069 Downstream 68bp 8917 chr1 158813136 158813136 1 + T G SARC 158813137 + 158813117 158813157 41 ACCAGGAAGAAGTGGGTCTTGCGGCACCTGCACCCACCGCA ACCAGGAAGAAGTGGGTCTGGCGGCACCTGCACCCACCGCA < 41bp 0.728212193733037 0.397387975521029 NA NA prediction 0.456424387466074 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813137 chr1:158813136 synonymous SNV . 0 20 hm7G_associated_SNPs_9421 0 0 0 0 2 MNDA chr1:158813205 5'GT 158813205 Upstream 70bp 8918 chr19 46024584 46024584 1 + T G rs2301283 46024585 + 46024565 46024605 41 TCTCTCACCTTTCAGGAGGTGGGCCCCCTCCACCCCCAGCA TCTCTCACCTTTCAGGAGGGGGGCCCCCTCCACCCCCAGCA < 41bp 0.728191578061753 0.378652904431854 NA NA prediction 0.456383156123506 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46024585 chr19:46024584 synonymous SNV . 0 20 hm7G_associated_SNPs_9422 0 0 1 0 2 VASP chr19:46024580 3'AG 46024580 Downstream 5bp 8919 chr19 46024584 46024584 1 + T G rs2301283 46024585 + 46024565 46024605 41 TCTCTCACCTTTCAGGAGGTGGGCCCCCTCCACCCCCAGCA TCTCTCACCTTTCAGGAGGGGGGCCCCCTCCACCCCCAGCA < 41bp 0.728191578061753 0.378652904431854 NA NA prediction 0.456383156123506 Functional Loss - VASP ENSG00000125753 CDS Human protein_coding chr19:46024585 chr19:46024584 synonymous SNV . 0 20 hm7G_associated_SNPs_9422 0 0 1 0 2 VASP chr19:46024664 5'GT 46024664 Upstream 81bp 8920 chr6 151939128 151939128 1 + T G THCA 151939129 + 151939109 151939149 41 CAGATGCTAGGCTTGAACGTGACCAGCCTTGCTCTTCCTGA CAGATGCTAGGCTTGAACGGGACCAGCCTTGCTCTTCCTGA < 41bp 0.728131040335071 0.415842841120137 NA NA prediction 0.456262080670142 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151939129 chr6:151939128 nonsynonymous SNV 0.195 2 20 hm7G_associated_SNPs_9425 0 0 0 0 1 CCDC170 chr6:151939082 3'AG 151939082 Downstream 47bp 8921 chr17 34144748 34144748 1 + T G OV 34144749 + 34144729 34144769 41 GTTACGGTCAGTCTGGGGGTGAGCAGCAAAGGTAAAGTATA GTTACGGTCAGTCTGGGGGGGAGCAGCAAAGGTAAAGTATA < 41bp 0.879988625583246 0.651876213445421 NA NA prediction 0.45622482427565 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34144749 chr17:34144748 synonymous SNV . 0 20 hm7G_associated_SNPs_9427 0 0 1 0 2 TAF15 chr17:34144720 3'AG 34144720 Downstream 29bp 8922 chr17 34144748 34144748 1 + T G OV 34144749 + 34144729 34144769 41 GTTACGGTCAGTCTGGGGGTGAGCAGCAAAGGTAAAGTATA GTTACGGTCAGTCTGGGGGGGAGCAGCAAAGGTAAAGTATA < 41bp 0.879988625583246 0.651876213445421 NA NA prediction 0.45622482427565 Functional Loss - TAF15 ENSG00000172660 CDS Human other chr17:34144749 chr17:34144748 synonymous SNV . 0 20 hm7G_associated_SNPs_9427 0 0 1 0 2 TAF15 chr17:34144759 5'GT 34144759 Upstream 12bp 8923 chr11 44639893 44639893 1 + A G STAD 44639894 + 44639874 44639914 41 CAGAGTGGCAACCACCCTGAGGACTGGCCTGTGTACCAGGA CAGAGTGGCAACCACCCTGGGGACTGGCCTGTGTACCAGGA < 41bp 0.728037044570626 0.497392974381874 NA NA prediction 0.456074089141253 Functional Loss - CD82 ENSG00000085117 CDS Human protein_coding chr11:44639894 chr11:44639893 nonsynonymous SNV 0.460 0 20 hm7G_associated_SNPs_9429 0 0 1 0 1 CD82 chr11:44639915 5'GT 44639915 Upstream 23bp 8924 chr6 37411833 37411833 1 + T G SKCM 37411834 + 37411814 37411854 41 AGGGGAAACAACACAGCTCTGACTCTTTTGACGATGCATTC AGGGGAAACAACACAGCTCGGACTCTTTTGACGATGCATTC < 41bp 0.728035486416558 0.381490872338436 NA NA prediction 0.456070972833116 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37411834 chr6:37411833 synonymous SNV . 0 20 hm7G_associated_SNPs_9430 0 0 1 0 2 CMTR1 chr6:37411775 3'AG 37411775 Downstream 59bp 8925 chr6 37411833 37411833 1 + T G SKCM 37411834 + 37411814 37411854 41 AGGGGAAACAACACAGCTCTGACTCTTTTGACGATGCATTC AGGGGAAACAACACAGCTCGGACTCTTTTGACGATGCATTC < 41bp 0.728035486416558 0.381490872338436 NA NA prediction 0.456070972833116 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37411834 chr6:37411833 synonymous SNV . 0 20 hm7G_associated_SNPs_9430 0 0 1 0 2 CMTR1 chr6:37411926 5'GT 37411926 Upstream 94bp 8926 chr12 108006618 108006618 1 + T G BRCA 108006619 + 108006599 108006639 41 GCGATGGTTCAGATGCTGCTGGATGCCGGAGCTGACCTGAA GCGATGGTTCAGATGCTGCGGGATGCCGGAGCTGACCTGAA < 41bp 0.727931355623211 0.376161192614173 NA NA prediction 0.455862711246422 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108006619 chr12:108006618 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9431 0 0 0 0 2 BTBD11 chr12:108006557 3'AG 108006557 Downstream 62bp 8927 chr12 108006618 108006618 1 + T G BRCA 108006619 + 108006599 108006639 41 GCGATGGTTCAGATGCTGCTGGATGCCGGAGCTGACCTGAA GCGATGGTTCAGATGCTGCGGGATGCCGGAGCTGACCTGAA < 41bp 0.727931355623211 0.376161192614173 NA NA prediction 0.455862711246422 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108006619 chr12:108006618 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9431 0 0 0 0 2 BTBD11 chr12:108006646 5'GT 108006646 Upstream 29bp 8928 chr2 3745027 3745027 1 + T G DLBC 3745028 + 3745008 3745048 41 TAATAACTCGAATTGAAATTGACACAAAATATTTTGAAGGT TAATAACTCGAATTGAAATGGACACAAAATATTTTGAAGGT < 41bp 0.727918538088166 0.416637135875881 NA NA prediction 0.455837076176332 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3745028 chr2:3745027 nonsynonymous SNV 0.944 1 20 hm7G_associated_SNPs_9432 0 0 0 0 2 ALLC chr2:3744938 3'AG 3744938 Downstream 90bp 8929 chr2 3745027 3745027 1 + T G DLBC 3745028 + 3745008 3745048 41 TAATAACTCGAATTGAAATTGACACAAAATATTTTGAAGGT TAATAACTCGAATTGAAATGGACACAAAATATTTTGAAGGT < 41bp 0.727918538088166 0.416637135875881 NA NA prediction 0.455837076176332 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3745028 chr2:3745027 nonsynonymous SNV 0.944 1 20 hm7G_associated_SNPs_9432 0 0 0 0 2 ALLC chr2:3745046 5'GT 3745046 Upstream 20bp 8930 chr16 2514205 2514205 1 + T G SKCM 2514206 + 2514186 2514226 41 AAGCTGCGAGTGGCTGTGCTGGACCAGCAGATCCACTTGGA AAGCTGCGAGTGGCTGTGCGGGACCAGCAGATCCACTTGGA < 41bp 0.886227613009738 0.658318796630526 NA NA prediction 0.455817632758422 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514206 chr16:2514205 nonsynonymous SNV 0.428 2 20 hm7G_associated_SNPs_9433 0 0 0 0 2 C16orf59 chr16:2514155 3'AG 2514155 Downstream 51bp 8931 chr16 2514205 2514205 1 + T G SKCM 2514206 + 2514186 2514226 41 AAGCTGCGAGTGGCTGTGCTGGACCAGCAGATCCACTTGGA AAGCTGCGAGTGGCTGTGCGGGACCAGCAGATCCACTTGGA < 41bp 0.886227613009738 0.658318796630526 NA NA prediction 0.455817632758422 Functional Loss - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514206 chr16:2514205 nonsynonymous SNV 0.428 2 20 hm7G_associated_SNPs_9433 0 0 0 0 2 C16orf59 chr16:2514230 5'GT 2514230 Upstream 26bp 8932 chr20 31016032 31016032 1 + T G LUAD 31016033 + 31016013 31016053 41 GGTCTAATGAAGCCAGCACTGTGAGTGGTGAAAACGATGGT GGTCTAATGAAGCCAGCACGGTGAGTGGTGAAAACGATGGT < 41bp 0.727897781143978 0.388733175431578 NA NA prediction 0.455795562287956 Functional Loss - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31016033 chr20:31016032 synonymous SNV . 0 20 hm7G_associated_SNPs_9434 0 0 1 4 1 ASXL1 chr20:31016051 5'GT 31016051 Upstream 20bp 8933 chr6 28331131 28331131 1 + T G UCEC 28331132 + 28331112 28331152 41 TGCTGCAGAGAAGATAAAGTGGTAGCTTCTAGGCTTACTCC TGCTGCAGAGAAGATAAAGGGGTAGCTTCTAGGCTTACTCC < 41bp 0.727829964609578 0.384135274203845 NA NA prediction 0.455659929219156 Functional Loss - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28331132 chr6:28331131 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_9437 0 0 1 0 2 ZKSCAN3 chr6:28331080 3'AG 28331080 Downstream 52bp 8934 chr6 28331131 28331131 1 + T G UCEC 28331132 + 28331112 28331152 41 TGCTGCAGAGAAGATAAAGTGGTAGCTTCTAGGCTTACTCC TGCTGCAGAGAAGATAAAGGGGTAGCTTCTAGGCTTACTCC < 41bp 0.727829964609578 0.384135274203845 NA NA prediction 0.455659929219156 Functional Loss - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28331132 chr6:28331131 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_9437 0 0 1 0 2 ZKSCAN3 chr6:28331162 5'GT 28331162 Upstream 32bp 8935 chr2 228767752 228767752 1 + T G GBM 228767753 + 228767733 228767773 41 AACCCTCAAAGCACATTGGTGGCGACTGGAAGTATGGACAC AACCCTCAAAGCACATTGGGGGCGACTGGAAGTATGGACAC < 41bp 0.887208686624021 0.659413983842379 NA NA prediction 0.455589405563282 Functional Loss - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228767753 chr2:228767752 nonsynonymous SNV 0.931 1 20 hm7G_associated_SNPs_9438 0 0 0 0 1 DAW1 chr2:228767718 3'AG 228767718 Downstream 35bp 8936 chr4 37857345 37857345 1 + T G SKCM 37857346 + 37857326 37857366 41 AGTACTATGCAGAGCTGTGTGCCCCACCTGGGAACAGGTAT AGTACTATGCAGAGCTGTGGGCCCCACCTGGGAACAGGTAT < 41bp 0.889624552978703 0.661926408878156 NA NA prediction 0.455396288201094 Functional Loss - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37857346 chr4:37857345 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_9439 0 0 1 0 1 PGM2 chr4:37857362 5'GT 37857362 Upstream 18bp 8937 chr5 86679568 86679568 1 + T G SKCM 86679569 + 86679549 86679589 41 CTCATCTGTCCTGCCATCCTGAATCCACGGATGTTCAATAT CTCATCTGTCCTGCCATCCGGAATCCACGGATGTTCAATAT < 41bp 0.72769080832058 0.399977425274204 NA NA prediction 0.45538161664116 Functional Loss - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86679569 chr5:86679568 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9440 0 0 1 0 2 RASA1 chr5:86679530 3'AG 86679530 Downstream 39bp 8938 chr5 86679568 86679568 1 + T G SKCM 86679569 + 86679549 86679589 41 CTCATCTGTCCTGCCATCCTGAATCCACGGATGTTCAATAT CTCATCTGTCCTGCCATCCGGAATCCACGGATGTTCAATAT < 41bp 0.72769080832058 0.399977425274204 NA NA prediction 0.45538161664116 Functional Loss - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86679569 chr5:86679568 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9440 0 0 1 0 2 RASA1 chr5:86679597 5'GT 86679597 Upstream 30bp 8939 chr17 21280185 21280185 1 + T G rs9902386 21280186 + 21280166 21280206 41 GGAACGGCCGCCCGGAGCTTGGAGGACGCCGAGCGCGCCGC GGAACGGCCGCCCGGAGCTGGGAGGACGCCGAGCGCGCCGC < 41bp 0.807636003378495 0.580028377204312 NA NA prediction 0.455215252348366 Functional Loss - KCNJ12 ENSG00000184185 UTR5 Human protein_coding chr17:21280186 chr17:21280185 . . 0 20 hm7G_associated_SNPs_9442 0 0 0 0 1 KCNJ12 chr17:21280225 5'GT 21280225 Upstream 41bp 8940 chr12 58006770 58006770 1 + T G LUSC 58006771 + 58006751 58006791 41 GCTTCTGCTGCCTCCGGTCTGGCTGCCCCCTCTGGCCCCAG GCTTCTGCTGCCTCCGGTCGGGCTGCCCCCTCTGGCCCCAG < 41bp 0.727606342409467 0.381134044539609 NA NA prediction 0.455212684818935 Functional Loss - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58006771 chr12:58006770 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_9443 0 0 1 0 1 ARHGEF25 chr12:58006713 3'AG 58006713 Downstream 58bp 8941 chr19 52729060 52729060 1 + T G BRCA 52729061 + 52729041 52729081 41 TTGCCCAGGAGGCTCTGACTGGTAAGACCTAGAAAGCACGG TTGCCCAGGAGGCTCTGACGGGTAAGACCTAGAAAGCACGG < 41bp 0.875488561113031 0.647935350656069 NA NA prediction 0.455106420913925 Functional Loss - PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52729061 chr19:52729060 synonymous SNV . 0 20 hm7G_associated_SNPs_9444 0 0 1 0 2 PPP2R1A chr19:52728970 3'AG 52728970 Downstream 91bp 8942 chr19 52729060 52729060 1 + T G BRCA 52729061 + 52729041 52729081 41 TTGCCCAGGAGGCTCTGACTGGTAAGACCTAGAAAGCACGG TTGCCCAGGAGGCTCTGACGGGTAAGACCTAGAAAGCACGG < 41bp 0.875488561113031 0.647935350656069 NA NA prediction 0.455106420913925 Functional Loss - PPP2R1A ENSG00000105568 CDS Human protein_coding chr19:52729061 chr19:52729060 synonymous SNV . 0 20 hm7G_associated_SNPs_9444 0 0 1 0 2 PPP2R1A chr19:52729061 5'GT 52729061 Upstream 2bp 8943 chr2 131127678 131127678 1 + A G rs76476478 131127679 + 131127659 131127699 41 GCCAGACCGTGGGGTCCCCAGCAGTCCTGACCACATGCTCG GCCAGACCGTGGGGTCCCCGGCAGTCCTGACCACATGCTCG < 41bp 0.740956543041209 0.513579568734837 NA NA prediction 0.454753948612743 Functional Loss - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131127679 chr2:131127678 nonsynonymous SNV 0.868 1 20 hm7G_associated_SNPs_9447 0 0 1 0 2 PTPN18 chr2:131127621 3'AG 131127621 Downstream 58bp 8944 chr2 131127678 131127678 1 + A G rs76476478 131127679 + 131127659 131127699 41 GCCAGACCGTGGGGTCCCCAGCAGTCCTGACCACATGCTCG GCCAGACCGTGGGGTCCCCGGCAGTCCTGACCACATGCTCG < 41bp 0.740956543041209 0.513579568734837 NA NA prediction 0.454753948612743 Functional Loss - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131127679 chr2:131127678 nonsynonymous SNV 0.868 1 20 hm7G_associated_SNPs_9447 0 0 1 0 2 PTPN18 chr2:131127763 5'GT 131127763 Upstream 86bp 8945 chr11 111808237 111808237 1 + T G rs587684441 111808238 + 111808218 111808258 41 GGAACAATGCTAGCCTGCCTGACCCGAGGGAACTTACTGGA GGAACAATGCTAGCCTGCCGGACCCGAGGGAACTTACTGGA < 41bp 0.72725989723025 0.398083392226035 NA NA prediction 0.454519794460499 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111808238 chr11:111808237 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9448 0 0 1 0 1 DIXDC1 chr11:111808283 5'GT 111808283 Upstream 47bp 8946 chr11 8009235 8009235 1 + T G STAD 8009236 + 8009216 8009256 41 ACGAGAGACGCAACGAGGGTGCTGCCCGAGTTATCGGGACC ACGAGAGACGCAACGAGGGGGCTGCCCGAGTTATCGGGACC < 41bp 0.895494922941689 0.668235681291443 NA NA prediction 0.454518483300492 Functional Loss - EIF3F ENSG00000175390 CDS Human protein_coding chr11:8009236 chr11:8009235 synonymous SNV . 0 20 hm7G_associated_SNPs_9449 0 0 1 0 1 EIF3F chr11:8009263 5'GT 8009263 Upstream 29bp 8947 chr3 186449384 186449384 1 + T G UCEC 186449385 + 186449365 186449405 41 TCGATATTCAGCTACGAATTGCTTCCTTCTCACAGAACTGT TCGATATTCAGCTACGAATGGCTTCCTTCTCACAGAACTGT < 41bp 0.727228120696085 0.399591582445854 NA NA prediction 0.454456241392171 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186449385 chr3:186449384 nonsynonymous SNV 0.033 3 20 hm7G_associated_SNPs_9450 0 0 0 0 2 KNG1 chr3:186449334 3'AG 186449334 Downstream 51bp 8948 chr3 186449384 186449384 1 + T G UCEC 186449385 + 186449365 186449405 41 TCGATATTCAGCTACGAATTGCTTCCTTCTCACAGAACTGT TCGATATTCAGCTACGAATGGCTTCCTTCTCACAGAACTGT < 41bp 0.727228120696085 0.399591582445854 NA NA prediction 0.454456241392171 Functional Loss - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186449385 chr3:186449384 nonsynonymous SNV 0.033 3 20 hm7G_associated_SNPs_9450 0 0 0 0 2 KNG1 chr3:186449418 5'GT 186449418 Upstream 35bp 8949 chr10 98080419 98080419 1 + T G LUAD 98080420 + 98080400 98080440 41 ACTGTGAGTTTAGAGAAAATGAAGACTCCTGTGTGACATTT ACTGTGAGTTTAGAGAAAAGGAAGACTCCTGTGTGACATTT < 41bp 0.885259067576268 0.658126807584784 NA NA prediction 0.454264519982968 Functional Loss - DNTT ENSG00000107447 CDS Human protein_coding chr10:98080420 chr10:98080419 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_9452 0 0 0 0 1 DNTT chr10:98080375 3'AG 98080375 Downstream 45bp 8950 chr1 213290697 213290697 1 + T G COAD 213290698 + 213290678 213290718 41 GTTCTGAATTAATTGGTCCTGCTGAAGCTCACTCAGATTCC GTTCTGAATTAATTGGTCCGGCTGAAGCTCACTCAGATTCC < 41bp 0.726774851720352 0.488130830702291 NA NA prediction 0.453549703440704 Functional Loss - RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213290698 chr1:213290697 synonymous SNV . 0 20 hm7G_associated_SNPs_9456 0 0 1 0 1 RPS6KC1 chr1:213290752 5'GT 213290752 Upstream 56bp 8951 chr9 130996331 130996331 1 + T G UCEC 130996332 + 130996312 130996352 41 CCGCGGCTACGGGAGGAGATGGAGCGCATCGTGACCACCCA CCGCGGCTACGGGAGGAGAGGGAGCGCATCGTGACCACCCA < 41bp 0.901572125556415 0.674823453017954 NA NA prediction 0.453497345076921 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130996332 chr9:130996331 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9457 0 0 1 0 2 DNM1 chr9:130996300 3'AG 130996300 Downstream 32bp 8952 chr9 130996331 130996331 1 + T G UCEC 130996332 + 130996312 130996352 41 CCGCGGCTACGGGAGGAGATGGAGCGCATCGTGACCACCCA CCGCGGCTACGGGAGGAGAGGGAGCGCATCGTGACCACCCA < 41bp 0.901572125556415 0.674823453017954 NA NA prediction 0.453497345076921 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130996332 chr9:130996331 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9457 0 0 1 0 2 DNM1 chr9:130996386 5'GT 130996386 Upstream 56bp 8953 chr16 88593247 88593247 1 + T G rs532855986 88593248 + 88593228 88593268 41 GCCCTGACCCTGCTGCTGGTGGACGAGGCCTGCTGGCTGAG GCCCTGACCCTGCTGCTGGGGGACGAGGCCTGCTGGCTGAG < 41bp 0.726733613730119 0.374474929364954 NA NA prediction 0.453467227460238 Functional Loss - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88593248 chr16:88593247 nonsynonymous SNV 0.751 0 20 hm7G_associated_SNPs_9458 0 0 1 0 1 ZFPM1 chr16:88593222 3'AG 88593222 Downstream 26bp 8954 chrX 69421750 69421750 1 + T G UCEC 69421751 + 69421731 69421771 41 GTTTCACAGGTGTGTGCCCTGTGAGTAGCTCAGCCTTGAAG GTTTCACAGGTGTGTGCCCGGTGAGTAGCTCAGCCTTGAAG < 41bp 0.726728044400681 0.398827179817812 NA NA prediction 0.453456088801363 Functional Loss - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69421751 chrX:69421750 synonymous SNV . 0 20 hm7G_associated_SNPs_9459 0 0 0 0 1 DGAT2L6 chrX:69421740 3'AG 69421740 Downstream 11bp 8955 chr4 177067167 177067167 1 + T G LIHC 177067168 + 177067148 177067188 41 ACATGATAGCCACTGGCTGTGAAGACACAAATGTTCGTGTT ACATGATAGCCACTGGCTGGGAAGACACAAATGTTCGTGTT < 41bp 0.726615137073283 0.408579709996995 NA NA prediction 0.453230274146567 Functional Loss - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177067168 chr4:177067167 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_9462 0 0 0 0 1 WDR17 chr4:177067146 3'AG 177067146 Downstream 22bp 8956 chr1 193051368 193051368 1 + T G COAD 193051369 + 193051349 193051389 41 GTTGCTTTTTCCGATGAAATGGTACCATGTCCAGTGACTAC GTTGCTTTTTCCGATGAAAGGGTACCATGTCCAGTGACTAC < 41bp 0.885396127208991 0.658786930615117 NA NA prediction 0.453218393187748 Functional Loss - TROVE2 ENSG00000116747 CDS Human protein_coding chr1:193051369 chr1:193051368 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_9463 0 0 1 0 2 TROVE2 chr1:193051316 3'AG 193051316 Downstream 53bp 8957 chr1 193051368 193051368 1 + T G COAD 193051369 + 193051349 193051389 41 GTTGCTTTTTCCGATGAAATGGTACCATGTCCAGTGACTAC GTTGCTTTTTCCGATGAAAGGGTACCATGTCCAGTGACTAC < 41bp 0.885396127208991 0.658786930615117 NA NA prediction 0.453218393187748 Functional Loss - TROVE2 ENSG00000116747 CDS Human protein_coding chr1:193051369 chr1:193051368 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_9463 0 0 1 0 2 TROVE2 chr1:193051429 5'GT 193051429 Upstream 62bp 8958 chr1 89847445 89847445 1 + T G rs146250255 89847446 + 89847426 89847466 41 CTCCAGGAGCTGCTGGACATGCATGCGGCCTGTGAGAGGGA CTCCAGGAGCTGCTGGACAGGCATGCGGCCTGTGAGAGGGA < 41bp 0.89682997941828 0.670243444025522 NA NA prediction 0.453173070785516 Functional Loss - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89847446 chr1:89847445 nonsynonymous SNV 0.026 1 20 hm7G_associated_SNPs_9464 0 0 0 0 1 GBP6 chr1:89847533 5'GT 89847533 Upstream 89bp 8959 chr19 49971741 49971741 1 + T G BLCA 49971742 + 49971722 49971762 41 CTTGCCTTCGTGTCCCTGCTGGCTCCCGCCCTGGCCTACGG CTTGCCTTCGTGTCCCTGCGGGCTCCCGCCCTGGCCTACGG < 41bp 0.726573058347054 0.379501301270173 NA NA prediction 0.453146116694109 Functional Loss - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49971742 chr19:49971741 nonsynonymous SNV 0.220 4 20 hm7G_associated_SNPs_9465 0 0 1 0 1 ALDH16A1 chr19:49971823 5'GT 49971823 Upstream 83bp 8960 chr1 162749962 162749962 1 + T G LUSC 162749963 + 162749943 162749983 41 TAAGCTGATGCTCAGCTGCTGGAGAAGAGATACGAAGAACC TAAGCTGATGCTCAGCTGCGGGAGAAGAGATACGAAGAACC < 41bp 0.880926612433251 0.654363503236641 NA NA prediction 0.453126218393221 Functional Loss - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162749963 chr1:162749962 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9466 0 0 0 0 1 DDR2 chr1:162749902 3'AG 162749902 Downstream 61bp 8961 chr16 2983810 2983810 1 + T G BRCA 2983811 + 2983791 2983831 41 AAGGCGGCTGGGGAGAAGGTGTATTGGACCTGCCGGGACCA AAGGCGGCTGGGGAGAAGGGGTATTGGACCTGCCGGGACCA < 41bp 0.726542559875988 0.377085140231266 NA NA prediction 0.453085119751975 Functional Loss - FLYWCH1 ENSG00000059122 CDS Human protein_coding chr16:2983811 chr16:2983810 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_9467 0 0 0 0 1 FLYWCH1 chr16:2983717 3'AG 2983717 Downstream 94bp 8962 chr4 77941776 77941776 1 + T G KIRC 77941777 + 77941757 77941797 41 TGTACCGACGCTGTAAGCTTGAAGAGATGGGGTTCAAGGAC TGTACCGACGCTGTAAGCTGGAAGAGATGGGGTTCAAGGAC < 41bp 0.882571049188776 0.656068952211836 NA NA prediction 0.453004193953878 Functional Loss - SEPT11 ENSG00000138758 CDS Human protein_coding chr4:77941777 chr4:77941776 synonymous SNV . 0 20 hm7G_associated_SNPs_9469 0 0 1 0 1 SEPT11 chr4:77941823 5'GT 77941823 Upstream 48bp 8963 chr13 102227864 102227864 1 + T G OV 102227865 + 102227845 102227885 41 TGAGTGTGACGATAGAGAATGCATAGACGATGAAACAGAAG TGAGTGTGACGATAGAGAAGGCATAGACGATGAAACAGAAG < 41bp 0.884799967392358 0.658298192468388 NA NA prediction 0.453003549847941 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102227865 chr13:102227864 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9470 0 0 0 0 2 ITGBL1 chr13:102227775 3'AG 102227775 Downstream 90bp 8964 chr13 102227864 102227864 1 + T G OV 102227865 + 102227845 102227885 41 TGAGTGTGACGATAGAGAATGCATAGACGATGAAACAGAAG TGAGTGTGACGATAGAGAAGGCATAGACGATGAAACAGAAG < 41bp 0.884799967392358 0.658298192468388 NA NA prediction 0.453003549847941 Functional Loss - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102227865 chr13:102227864 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9470 0 0 0 0 2 ITGBL1 chr13:102227897 5'GT 102227897 Upstream 34bp 8965 chr7 106799987 106799987 1 + T G UCEC 106799988 + 106799968 106800008 41 GAAGAACAGTTAGTTGCCCTGTTTGGAACGAACATGGATAT GAAGAACAGTTAGTTGCCCGGTTTGGAACGAACATGGATAT < 41bp 0.850264862247826 0.623913181533818 NA NA prediction 0.452703361428016 Functional Loss - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106799988 chr7:106799987 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9473 0 0 1 0 1 PRKAR2B chr7:106799894 3'AG 106799894 Downstream 94bp 8966 chr1 183086486 183086486 1 + T G rs61752348 183086487 + 183086467 183086507 41 GGCGTGCGGAACAGAGAGATGGCTCTGAAGCATCTCTCGAG GGCGTGCGGAACAGAGAGAGGGCTCTGAAGCATCTCTCGAG < 41bp 0.726274824753943 0.375140193059578 NA NA prediction 0.452549649507887 Functional Loss - LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086487 chr1:183086486 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_9474 0 0 1 0 2 LAMC1 chr1:183086455 3'AG 183086455 Downstream 32bp 8967 chr1 183086486 183086486 1 + T G rs61752348 183086487 + 183086467 183086507 41 GGCGTGCGGAACAGAGAGATGGCTCTGAAGCATCTCTCGAG GGCGTGCGGAACAGAGAGAGGGCTCTGAAGCATCTCTCGAG < 41bp 0.726274824753943 0.375140193059578 NA NA prediction 0.452549649507887 Functional Loss - LAMC1 ENSG00000135862 CDS Human protein_coding chr1:183086487 chr1:183086486 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_9474 0 0 1 0 2 LAMC1 chr1:183086577 5'GT 183086577 Upstream 92bp 8968 chr11 61105586 61105586 1 + T G LUSC 61105587 + 61105567 61105607 41 CGGGTGGGGGCTCTGGCCATGAGCCTGCCCATGCTGGTGAG CGGGTGGGGGCTCTGGCCAGGAGCCTGCCCATGCTGGTGAG < 41bp 0.7261806585403 0.374692833336298 NA NA prediction 0.4523613170806 Functional Loss - TKFC ENSG00000149476 CDS Human protein_coding chr11:61105587 chr11:61105586 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9476 0 0 1 0 1 TKFC chr11:61105602 5'GT 61105602 Upstream 17bp 8969 chr7 44147429 44147429 1 + A G ESCA 44147430 + 44147410 44147450 41 GAGTACATTCGGCGCCAGAAGCAACCCAGGCCACCCCCAAG GAGTACATTCGGCGCCAGAGGCAACCCAGGCCACCCCCAAG < 41bp 0.742162868106016 0.516142925714758 NA NA prediction 0.452039884782517 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44147430 chr7:44147429 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_9479 0 0 0 0 1 AEBP1 chr7:44147408 3'AG 44147408 Downstream 22bp 8970 chr4 169099096 169099096 1 + T G SKCM 169099097 + 169099077 169099117 41 CACAAAACCATGCTGCAAATGATCCTGTGCAACAAGAGCTA CACAAAACCATGCTGCAAAGGATCCTGTGCAACAAGAGCTA < 41bp 0.8852815719526 0.65930175011052 NA NA prediction 0.451959643684161 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099097 chr4:169099096 nonsynonymous SNV 0.963 0 20 hm7G_associated_SNPs_9480 0 0 0 0 2 ANXA10 chr4:169099041 3'AG 169099041 Downstream 56bp 8971 chr4 169099096 169099096 1 + T G SKCM 169099097 + 169099077 169099117 41 CACAAAACCATGCTGCAAATGATCCTGTGCAACAAGAGCTA CACAAAACCATGCTGCAAAGGATCCTGTGCAACAAGAGCTA < 41bp 0.8852815719526 0.65930175011052 NA NA prediction 0.451959643684161 Functional Loss - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099097 chr4:169099096 nonsynonymous SNV 0.963 0 20 hm7G_associated_SNPs_9480 0 0 0 0 2 ANXA10 chr4:169099134 5'GT 169099134 Upstream 39bp 8972 chr1 205042273 205042273 1 + T G rs116036521 205042274 + 205042254 205042294 41 GGATAGAAATCCCAGTGCCTGAAGACATTGGCCATGCCCTG GGATAGAAATCCCAGTGCCGGAAGACATTGGCCATGCCCTG < 41bp 0.725977472589268 0.387410980911513 NA NA prediction 0.451954945178536 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205042274 chr1:205042273 synonymous SNV . 0 20 hm7G_associated_SNPs_9481 0 0 0 0 2 CNTN2 chr1:205042196 3'AG 205042196 Downstream 78bp 8973 chr1 205042273 205042273 1 + T G rs116036521 205042274 + 205042254 205042294 41 GGATAGAAATCCCAGTGCCTGAAGACATTGGCCATGCCCTG GGATAGAAATCCCAGTGCCGGAAGACATTGGCCATGCCCTG < 41bp 0.725977472589268 0.387410980911513 NA NA prediction 0.451954945178536 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205042274 chr1:205042273 synonymous SNV . 0 20 hm7G_associated_SNPs_9481 0 0 0 0 2 CNTN2 chr1:205042364 5'GT 205042364 Upstream 92bp 8974 chrX 14627263 14627263 1 + T G LUAD 14627264 + 14627244 14627284 41 GCCCCTGCCAGGGTCGCACTGGGCATCACCACAGTCTTAAC GCCCCTGCCAGGGTCGCACGGGGCATCACCACAGTCTTAAC < 41bp 0.725931504183687 0.381788805648961 NA NA prediction 0.451863008367374 Functional Loss - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14627264 chrX:14627263 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9483 0 0 0 0 1 GLRA2 chrX:14627327 5'GT 14627327 Upstream 65bp 8975 chr13 51528115 51528115 1 + T G UCEC 51528116 + 51528096 51528136 41 ATACTAAAGATTTGAAGACTGAAAAGGTATGTGGGTTCAGG ATACTAAAGATTTGAAGACGGAAAAGGTATGTGGGTTCAGG < 41bp 0.865689423387096 0.639896248577155 NA NA prediction 0.451586349619883 Functional Loss - RNASEH2B ENSG00000136104 CDS Human protein_coding chr13:51528116 chr13:51528115 synonymous SNV . 0 20 hm7G_associated_SNPs_9486 0 0 1 0 2 RNASEH2B chr13:51528041 3'AG 51528041 Downstream 75bp 8976 chr13 51528115 51528115 1 + T G UCEC 51528116 + 51528096 51528136 41 ATACTAAAGATTTGAAGACTGAAAAGGTATGTGGGTTCAGG ATACTAAAGATTTGAAGACGGAAAAGGTATGTGGGTTCAGG < 41bp 0.865689423387096 0.639896248577155 NA NA prediction 0.451586349619883 Functional Loss - RNASEH2B ENSG00000136104 CDS Human protein_coding chr13:51528116 chr13:51528115 synonymous SNV . 0 20 hm7G_associated_SNPs_9486 0 0 1 0 2 RNASEH2B chr13:51528121 5'GT 51528121 Upstream 7bp 8977 chr20 2729243 2729243 1 + T G UCEC 2729244 + 2729224 2729264 41 ACCAGAACTGCCTGAAGAATGCGGGGAATCCCAGAGACATG ACCAGAACTGCCTGAAGAAGGCGGGGAATCCCAGAGACATG < 41bp 0.899819478150481 0.674031039088851 NA NA prediction 0.451576878123261 Functional Loss - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2729244 chr20:2729243 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_9487 0 0 0 2 2 EBF4 chr20:2729195 3'AG 2729195 Downstream 49bp 8978 chr20 2729243 2729243 1 + T G UCEC 2729244 + 2729224 2729264 41 ACCAGAACTGCCTGAAGAATGCGGGGAATCCCAGAGACATG ACCAGAACTGCCTGAAGAAGGCGGGGAATCCCAGAGACATG < 41bp 0.899819478150481 0.674031039088851 NA NA prediction 0.451576878123261 Functional Loss - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2729244 chr20:2729243 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_9487 0 0 0 2 2 EBF4 chr20:2729276 5'GT 2729276 Upstream 34bp 8979 chr19 49969059 49969059 1 + A G COAD 49969060 + 49969040 49969080 41 TCCTGGGGCCCGAAGCTCCAGGCCCATCCGGGATTCGTCTG TCCTGGGGCCCGAAGCTCCGGGCCCATCCGGGATTCGTCTG < 41bp 0.745743554064709 0.519963759563557 NA NA prediction 0.451559589002305 Functional Loss - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49969060 chr19:49969059 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_9488 0 0 1 0 1 ALDH16A1 chr19:49968995 3'AG 49968995 Downstream 65bp 8980 chr2 112847268 112847268 1 + T G STAD 112847269 + 112847249 112847289 41 TATACTTAATCTTTGCAGCTGTTGAAGGCGTGATGAGAGTC TATACTTAATCTTTGCAGCGGTTGAAGGCGTGATGAGAGTC < 41bp 0.882271517138847 0.656620002744301 NA NA prediction 0.451303028789093 Functional Loss - TMEM87B ENSG00000153214 CDS Human protein_coding chr2:112847269 chr2:112847268 synonymous SNV . 0 20 hm7G_associated_SNPs_9491 0 0 1 0 2 TMEM87B chr2:112847202 3'AG 112847202 Downstream 67bp 8981 chr2 112847268 112847268 1 + T G STAD 112847269 + 112847249 112847289 41 TATACTTAATCTTTGCAGCTGTTGAAGGCGTGATGAGAGTC TATACTTAATCTTTGCAGCGGTTGAAGGCGTGATGAGAGTC < 41bp 0.882271517138847 0.656620002744301 NA NA prediction 0.451303028789093 Functional Loss - TMEM87B ENSG00000153214 CDS Human protein_coding chr2:112847269 chr2:112847268 synonymous SNV . 0 20 hm7G_associated_SNPs_9491 0 0 1 0 2 TMEM87B chr2:112847295 5'GT 112847295 Upstream 28bp 8982 chr17 7907173 7907173 1 + T G LUAD 7907174 + 7907154 7907194 41 AAGCCTCTGTCCGCAGCAGTGATCATGGTGATGCACTCGGT AAGCCTCTGTCCGCAGCAGGGATCATGGTGATGCACTCGGT < 41bp 0.897329690484417 0.671684845065067 NA NA prediction 0.4512896908387 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7907174 chr17:7907173 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_9492 0 0 0 0 1 GUCY2D chr17:7907170 3'AG 7907170 Downstream 4bp 8983 chr14 93399135 93399135 1 + A G TGCT 93399136 + 93399116 93399156 41 GAGGCGGGCCTGCCCCTCCAGGTCCGAGGCTACCCCGAGGA GAGGCGGGCCTGCCCCTCCGGGTCCGAGGCTACCCCGAGGA < 41bp 0.741549790416549 0.515920879868911 NA NA prediction 0.451257821095275 Functional Loss - CHGA ENSG00000100604 CDS Human protein_coding chr14:93399136 chr14:93399135 nonsynonymous SNV 0.045 0 20 hm7G_associated_SNPs_9493 0 0 0 0 1 CHGA chr14:93399196 5'GT 93399196 Upstream 62bp 8984 chr17 80011178 80011178 1 + T G COAD 80011179 + 80011159 80011199 41 GAGCCCATGCAGATCGACGTGGACCCCCAGGAAGACCCGCA GAGCCCATGCAGATCGACGGGGACCCCCAGGAAGACCCGCA < 41bp 0.908776431091979 0.683201037365531 NA NA prediction 0.451150787452896 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80011179 chr17:80011178 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_9494 0 0 1 0 3 GPS1 chr17:80011110 3'AG 80011110 Downstream 69bp 8985 chr17 80011178 80011178 1 + T G COAD 80011179 + 80011159 80011199 41 GAGCCCATGCAGATCGACGTGGACCCCCAGGAAGACCCGCA GAGCCCATGCAGATCGACGGGGACCCCCAGGAAGACCCGCA < 41bp 0.908776431091979 0.683201037365531 NA NA prediction 0.451150787452896 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80011179 chr17:80011178 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_9494 0 0 1 0 3 GPS1 chr17:80011150 3'AG 80011150 Downstream 29bp 8986 chr17 80011178 80011178 1 + T G COAD 80011179 + 80011159 80011199 41 GAGCCCATGCAGATCGACGTGGACCCCCAGGAAGACCCGCA GAGCCCATGCAGATCGACGGGGACCCCCAGGAAGACCCGCA < 41bp 0.908776431091979 0.683201037365531 NA NA prediction 0.451150787452896 Functional Loss - GPS1 ENSG00000169727 CDS Human protein_coding chr17:80011179 chr17:80011178 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_9494 0 0 1 0 3 GPS1 chr17:80011242 5'GT 80011242 Upstream 65bp 8987 chr5 176295166 176295166 1 + A G COAD 176295167 + 176295147 176295187 41 GGTCCGCATTAATGTCTCAAGGCAGCAGGTCGAGAAGGTGT GGTCCGCATTAATGTCTCAGGGCAGCAGGTCGAGAAGGTGT < 41bp 0.725485896931287 0.498922950762519 NA NA prediction 0.450971793862573 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295167 chr5:176295166 nonsynonymous SNV 0.916 4 20 hm7G_associated_SNPs_9495 0 0 0 0 1 UNC5A chr5:176295131 3'AG 176295131 Downstream 36bp 8988 chr11 66613002 66613002 1 + T G BRCA 66613003 + 66612983 66613023 41 CCTACACAGCTGTCTTCGGTGCCTACACTGCTTTCCTCTTC CCTACACAGCTGTCTTCGGGGCCTACACTGCTTTCCTCTTC < 41bp 0.725446859002655 0.38030356102167 NA NA prediction 0.450893718005309 Functional Loss - RCE1 ENSG00000173653 CDS Human protein_coding chr11:66613003 chr11:66613002 synonymous SNV . 0 20 hm7G_associated_SNPs_9496 0 0 1 0 1 RCE1 chr11:66613033 5'GT 66613033 Upstream 32bp 8989 chr10 82185627 82185627 1 + T G rs143044329 82185628 + 82185608 82185648 41 TGTGTCTTCTACAGGAAGCTGCGGATCTGTCCTCCCTGAAA TGTGTCTTCTACAGGAAGCGGCGGATCTGTCCTCCCTGAAA < 41bp 0.725286325397748 0.388903536607462 NA NA prediction 0.450572650795496 Functional Loss - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82185628 chr10:82185627 synonymous SNV . 0 20 hm7G_associated_SNPs_9497 0 0 1 0 1 FAM213A chr10:82185622 3'AG 82185622 Downstream 6bp 8990 chr1 32625009 32625009 1 + T G HNSC 32625010 + 32624990 32625030 41 CTCACTTTCAGTTTGAAGCTGCCTGGGCTCTAACGAATATT CTCACTTTCAGTTTGAAGCGGCCTGGGCTCTAACGAATATT < 41bp 0.725236582961377 0.389814198779122 NA NA prediction 0.450473165922755 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32625010 chr1:32625009 synonymous SNV . 0 20 hm7G_associated_SNPs_9498 0 0 1 0 1 KPNA6 chr1:32625001 3'AG 32625001 Downstream 9bp 8991 chr16 57785893 57785893 1 + T G SKCM 57785894 + 57785874 57785914 41 AGATGATGTCTGAGTTCCCTGGTCACACGGGGCCTGTCAAC AGATGATGTCTGAGTTCCCGGGTCACACGGGGCCTGTCAAC < 41bp 0.90876992737954 0.683631530065854 NA NA prediction 0.450276794627371 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57785894 chr16:57785893 synonymous SNV . 0 20 hm7G_associated_SNPs_9499 0 0 1 0 2 KATNB1 chr16:57785852 3'AG 57785852 Downstream 42bp 8992 chr16 57785893 57785893 1 + T G SKCM 57785894 + 57785874 57785914 41 AGATGATGTCTGAGTTCCCTGGTCACACGGGGCCTGTCAAC AGATGATGTCTGAGTTCCCGGGTCACACGGGGCCTGTCAAC < 41bp 0.90876992737954 0.683631530065854 NA NA prediction 0.450276794627371 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57785894 chr16:57785893 synonymous SNV . 0 20 hm7G_associated_SNPs_9499 0 0 1 0 2 KATNB1 chr16:57785967 5'GT 57785967 Upstream 75bp 8993 chr7 129357091 129357091 1 + T G UCEC 129357092 + 129357072 129357112 41 GGGCCACGTTACAGGGAGGTGAGATGACCATCCAGACGACG GGGCCACGTTACAGGGAGGGGAGATGACCATCCAGACGACG < 41bp 0.725118480333691 0.374911308825271 NA NA prediction 0.450236960667381 Functional Loss - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129357092 chr7:129357091 synonymous SNV . 0 20 hm7G_associated_SNPs_9501 0 0 0 0 1 NRF1 chr7:129357059 3'AG 129357059 Downstream 33bp 8994 chr13 113505388 113505388 1 + T G GBM 113505389 + 113505369 113505409 41 TGTGTTGCTTATAAAAGGCTGATCCAAGAAGAATATGAAGG TGTGTTGCTTATAAAAGGCGGATCCAAGAAGAATATGAAGG < 41bp 0.725059527323864 0.388142223663313 NA NA prediction 0.450119054647728 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113505389 chr13:113505388 nonsynonymous SNV 0.028 5 20 hm7G_associated_SNPs_9503 0 0 1 0 1 ATP11A chr13:113505351 3'AG 113505351 Downstream 38bp 8995 chr13 73468017 73468017 1 + T G LUAD 73468018 + 73467998 73468038 41 AGTGAGCGTGTTCAACTTCTGCAAGAGGAAACAGCAAGAAA AGTGAGCGTGTTCAACTTCGGCAAGAGGAAACAGCAAGAAA < 41bp 0.879224037920102 0.654234603418448 NA NA prediction 0.449978869003307 Functional Loss - PIBF1 ENSG00000083535 CDS Human protein_coding chr13:73468018 chr13:73468017 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_9504 0 0 1 0 2 PIBF1 chr13:73467922 3'AG 73467922 Downstream 96bp 8996 chr13 73468017 73468017 1 + T G LUAD 73468018 + 73467998 73468038 41 AGTGAGCGTGTTCAACTTCTGCAAGAGGAAACAGCAAGAAA AGTGAGCGTGTTCAACTTCGGCAAGAGGAAACAGCAAGAAA < 41bp 0.879224037920102 0.654234603418448 NA NA prediction 0.449978869003307 Functional Loss - PIBF1 ENSG00000083535 CDS Human protein_coding chr13:73468018 chr13:73468017 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_9504 0 0 1 0 2 PIBF1 chr13:73468087 5'GT 73468087 Upstream 71bp 8997 chr9 96392312 96392312 1 + T G LUAD 96392313 + 96392293 96392333 41 TATACCACTGCCCAAACTGTGAGAAAACCCATGGGAAGTCC TATACCACTGCCCAAACTGGGAGAAAACCCATGGGAAGTCC < 41bp 0.724918730411101 0.37411272889379 NA NA prediction 0.449837460822202 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96392313 chr9:96392312 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_9507 0 0 1 0 3 PHF2 chr9:96392252 3'AG 96392252 Downstream 61bp 8998 chr9 96392312 96392312 1 + T G LUAD 96392313 + 96392293 96392333 41 TATACCACTGCCCAAACTGTGAGAAAACCCATGGGAAGTCC TATACCACTGCCCAAACTGGGAGAAAACCCATGGGAAGTCC < 41bp 0.724918730411101 0.37411272889379 NA NA prediction 0.449837460822202 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96392313 chr9:96392312 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_9507 0 0 1 0 3 PHF2 chr9:96392277 3'AG 96392277 Downstream 36bp 8999 chr9 96392312 96392312 1 + T G LUAD 96392313 + 96392293 96392333 41 TATACCACTGCCCAAACTGTGAGAAAACCCATGGGAAGTCC TATACCACTGCCCAAACTGGGAGAAAACCCATGGGAAGTCC < 41bp 0.724918730411101 0.37411272889379 NA NA prediction 0.449837460822202 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96392313 chr9:96392312 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_9507 0 0 1 0 3 PHF2 chr9:96392337 5'GT 96392337 Upstream 26bp 9000 chr17 7578202 7578202 1 - A C COAD 7578201 - 7578181 7578221 41 AACACTTTTCGACATAGTGTGGTGGTGCCCTATGAGCCGCC AACACTTTTCGACATAGTGGGGTGGTGCCCTATGAGCCGCC < 41bp 0.724835586352145 0.411478670132191 NA NA prediction 0.44967117270429 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7578201 chr17:7578202 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_9509 11 0 1 0 3 TP53 chr17:7578172 5'GT 7578172 Upstream 31bp 9001 chr17 7578202 7578202 1 - A C COAD 7578201 - 7578181 7578221 41 AACACTTTTCGACATAGTGTGGTGGTGCCCTATGAGCCGCC AACACTTTTCGACATAGTGGGGTGGTGCCCTATGAGCCGCC < 41bp 0.724835586352145 0.411478670132191 NA NA prediction 0.44967117270429 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7578201 chr17:7578202 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_9509 11 0 1 0 3 TP53 chr17:7578177 5'GT 7578177 Upstream 26bp 9002 chr17 7578202 7578202 1 - A C COAD 7578201 - 7578181 7578221 41 AACACTTTTCGACATAGTGTGGTGGTGCCCTATGAGCCGCC AACACTTTTCGACATAGTGGGGTGGTGCCCTATGAGCCGCC < 41bp 0.724835586352145 0.411478670132191 NA NA prediction 0.44967117270429 Functional Loss - TP53 ENSG00000141510 CDS Human protein_coding chr17:7578201 chr17:7578202 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_9509 11 0 1 0 3 TP53 chr17:7578289 3'AG 7578289 Downstream 88bp 9003 chr1 13308 13308 1 + T G ESCA 13309 + 13289 13329 41 CCTGTCCTGGACACGCTGTTGGCCTGGATCTGAGCCCTGGT CCTGTCCTGGACACGCTGTGGGCCTGGATCTGAGCCCTGGT < 41bp 0.724811468906687 0.420279266694803 NA NA prediction 0.449622937813374 Functional Loss - DDX11L1 ENSG00000223972 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:13309 chr1:13308 . . 0 20 hm7G_associated_SNPs_9510 0 0 0 1 1 DDX11L1 chr1:13221 3'AG 13221 Downstream 88bp 9004 chr2 128177520 128177520 1 + T G SKCM 128177521 + 128177501 128177541 41 GGTGCCAGTGCCTCCAGAATGTGGCAGCTCACAAGCCTCCT GGTGCCAGTGCCTCCAGAAGGTGGCAGCTCACAAGCCTCCT < 41bp 0.724778544374667 0.38476229145532 NA NA prediction 0.449557088749335 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128177521 chr2:128177520 nonsynonymous SNV 0.385 4 20 hm7G_associated_SNPs_9511 0 0 0 0 3 PROC chr2:128177498 3'AG 128177498 Downstream 23bp 9005 chr2 128177520 128177520 1 + T G SKCM 128177521 + 128177501 128177541 41 GGTGCCAGTGCCTCCAGAATGTGGCAGCTCACAAGCCTCCT GGTGCCAGTGCCTCCAGAAGGTGGCAGCTCACAAGCCTCCT < 41bp 0.724778544374667 0.38476229145532 NA NA prediction 0.449557088749335 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128177521 chr2:128177520 nonsynonymous SNV 0.385 4 20 hm7G_associated_SNPs_9511 0 0 0 0 3 PROC chr2:128177502 3'AG 128177502 Downstream 19bp 9006 chr2 128177520 128177520 1 + T G SKCM 128177521 + 128177501 128177541 41 GGTGCCAGTGCCTCCAGAATGTGGCAGCTCACAAGCCTCCT GGTGCCAGTGCCTCCAGAAGGTGGCAGCTCACAAGCCTCCT < 41bp 0.724778544374667 0.38476229145532 NA NA prediction 0.449557088749335 Functional Loss - PROC ENSG00000115718 CDS Human protein_coding chr2:128177521 chr2:128177520 nonsynonymous SNV 0.385 4 20 hm7G_associated_SNPs_9511 0 0 0 0 3 PROC chr2:128177588 5'GT 128177588 Upstream 69bp 9007 chrX 11130140 11130140 1 + T G KIRP 11130141 + 11130121 11130161 41 GTCTCTTTGTTTTGGCAGGTGGAAATTTAAAATTGTTTACA GTCTCTTTGTTTTGGCAGGGGGAAATTTAAAATTGTTTACA < 41bp 0.75928612508402 0.534530330559006 NA NA prediction 0.449511589050029 Functional Loss - HCCS ENSG00000004961 UTR5 Human protein_coding chrX:11130141 chrX:11130140 . . 0 20 hm7G_associated_SNPs_9512 0 0 0 0 1 HCCS chrX:11130139 3'AG 11130139 Downstream 2bp 9008 chr20 31619530 31619530 1 + T G SARC 31619531 + 31619511 31619551 41 CCTGGGGCACTGCTGCGGTTGGGCATGGACATCATGAACCG CCTGGGGCACTGCTGCGGTGGGGCATGGACATCATGAACCG < 41bp 0.724711346304552 0.390109344285275 NA NA prediction 0.449422692609105 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31619531 chr20:31619530 nonsynonymous SNV 0.776 3 20 hm7G_associated_SNPs_9514 0 0 0 0 2 BPIFB6 chr20:31619550 5'GT 31619550 Upstream 21bp 9009 chr20 31619530 31619530 1 + T G SARC 31619531 + 31619511 31619551 41 CCTGGGGCACTGCTGCGGTTGGGCATGGACATCATGAACCG CCTGGGGCACTGCTGCGGTGGGGCATGGACATCATGAACCG < 41bp 0.724711346304552 0.390109344285275 NA NA prediction 0.449422692609105 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31619531 chr20:31619530 nonsynonymous SNV 0.776 3 20 hm7G_associated_SNPs_9514 0 0 0 0 2 BPIFB6 chr20:31619553 5'GT 31619553 Upstream 24bp 9010 chr19 56390162 56390162 1 + T G LUSC 56390163 + 56390143 56390183 41 GTGTCTTTTTATTGCAGGTTGGAAGAATGTGGGTTAACGAG GTGTCTTTTTATTGCAGGTGGGAAGAATGTGGGTTAACGAG < 41bp 0.888867551213167 0.664223526241838 NA NA prediction 0.449288049942659 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56390163 chr19:56390162 nonsynonymous SNV 0.034 3 20 hm7G_associated_SNPs_9517 0 0 0 0 1 NLRP4 chr19:56390160 3'AG 56390160 Downstream 3bp 9011 chr6 157803268 157803268 1 + T G STAD 157803269 + 157803249 157803289 41 CTGACGCTCGTCCTCATCCTGGTCACTAGCGGACTCTTCTT CTGACGCTCGTCCTCATCCGGGTCACTAGCGGACTCTTCTT < 41bp 0.724629171476548 0.389087151411069 NA NA prediction 0.449258342953096 Functional Loss - ZDHHC14 ENSG00000175048 CDS Human protein_coding chr6:157803269 chr6:157803268 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9519 0 0 1 0 1 ZDHHC14 chr6:157803298 5'GT 157803298 Upstream 31bp 9012 chr9 133279161 133279161 1 + T G UCEC 133279162 + 133279142 133279182 41 GTCCTACCAGGCGGACAGCTGCGGATTGCCCATGCCAGCCC GTCCTACCAGGCGGACAGCGGCGGATTGCCCATGCCAGCCC < 41bp 0.724590103407019 0.397802529748781 NA NA prediction 0.449180206814037 Functional Loss - HMCN2 ENSG00000215428 CDS Human other chr9:133279162 chr9:133279161 nonsynonymous SNV 0.186 2 20 hm7G_associated_SNPs_9520 0 0 0 0 1 HMCN2 chr9:133279128 3'AG 133279128 Downstream 34bp 9013 chr12 53819292 53819292 1 + A G LUAD 53819293 + 53819273 53819313 41 TGAGCCAGTGCCAGAGCCAAGGCCAGACTCAGGCAGGGACT TGAGCCAGTGCCAGAGCCAGGGCCAGACTCAGGCAGGGACT < 41bp 0.73819019303982 0.513616209213466 NA NA prediction 0.449147967652709 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819293 chr12:53819292 nonsynonymous SNV 0.341 1 20 hm7G_associated_SNPs_9521 0 0 0 0 2 AMHR2 chr12:53819239 3'AG 53819239 Downstream 54bp 9014 chr12 53819292 53819292 1 + A G LUAD 53819293 + 53819273 53819313 41 TGAGCCAGTGCCAGAGCCAAGGCCAGACTCAGGCAGGGACT TGAGCCAGTGCCAGAGCCAGGGCCAGACTCAGGCAGGGACT < 41bp 0.73819019303982 0.513616209213466 NA NA prediction 0.449147967652709 Functional Loss - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819293 chr12:53819292 nonsynonymous SNV 0.341 1 20 hm7G_associated_SNPs_9521 0 0 0 0 2 AMHR2 chr12:53819357 5'GT 53819357 Upstream 66bp 9015 chr11 65338944 65338944 1 + T G rs2236684 65338945 + 65338925 65338965 41 TCCCCCTGGGCTCTCGACCTGCGCCCCAGCCCCCAGTACCT TCCCCCTGGGCTCTCGACCGGCGCCCCAGCCCCCAGTACCT < 41bp 0.89408180109851 0.669553123390013 NA NA prediction 0.449057355416995 Functional Loss - SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338945 chr11:65338944 synonymous SNV . 0 20 hm7G_associated_SNPs_9522 0 0 0 0 1 SSSCA1 chr11:65338862 3'AG 65338862 Downstream 83bp 9016 chr6 116542281 116542281 1 + T G SARC 116542282 + 116542262 116542302 41 GATATTTACATAGTTGTCCTGAATCTGTGAAAAAATGGCTT GATATTTACATAGTTGTCCGGAATCTGTGAAAAAATGGCTT < 41bp 0.881292914960134 0.656796563527559 NA NA prediction 0.448992702865149 Functional Loss - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116542282 chr6:116542281 synonymous SNV . 0 20 hm7G_associated_SNPs_9523 0 0 0 0 1 NT5DC1 chr6:116542217 3'AG 116542217 Downstream 65bp 9017 chr10 90562703 90562703 1 + T G UCEC 90562704 + 90562684 90562724 41 GTCTCACACAGAATGGAAATGTGGCTTCTGATTCTGGTGGC GTCTCACACAGAATGGAAAGGTGGCTTCTGATTCTGGTGGC < 41bp 0.724454779026716 0.439678877912972 NA NA prediction 0.448909558053432 Functional Loss - LIPM ENSG00000173239 CDS Human protein_coding chr10:90562704 chr10:90562703 nonsynonymous SNV 0.869 1 20 hm7G_associated_SNPs_9525 0 0 0 0 1 LIPM chr10:90562800 5'GT 90562800 Upstream 98bp 9018 chr19 17994749 17994749 1 + A G LIHC 17994750 + 17994730 17994770 41 ACCCAGCGAGCAGACCATGAGGGTCCTGCCATCGTCGGCTG ACCCAGCGAGCAGACCATGGGGGTCCTGCCATCGTCGGCTG < 41bp 0.727579778893043 0.503162623682411 NA NA prediction 0.448834310421264 Functional Loss - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17994750 chr19:17994749 nonsynonymous SNV 0.394 1 20 hm7G_associated_SNPs_9526 0 0 0 0 1 SLC5A5 chr19:17994659 3'AG 17994659 Downstream 91bp 9019 chr4 1801005 1801005 1 + A G LUSC 1801006 + 1800986 1801026 41 CCGGGCCCAGAGCCCGGCCAGCAGGAGCAGTTGGTCTTCGG CCGGGCCCAGAGCCCGGCCGGCAGGAGCAGTTGGTCTTCGG < 41bp 0.750015067871236 0.52564402536701 NA NA prediction 0.448742085008452 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1801006 chr4:1801005 nonsynonymous SNV 0.780 2 20 hm7G_associated_SNPs_9527 0 0 1 0 1 FGFR3 chr4:1800981 3'AG 1800981 Downstream 25bp 9020 chr9 101804353 101804353 1 + T G UCEC 101804354 + 101804334 101804374 41 GAGGACCAAAAGGTGACACTGGTTTACCTGGCTTTCCAGGA GAGGACCAAAAGGTGACACGGGTTTACCTGGCTTTCCAGGA < 41bp 0.72436773788087 0.380721933055492 NA NA prediction 0.448735475761741 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101804354 chr9:101804353 synonymous SNV . 0 20 hm7G_associated_SNPs_9528 0 0 0 0 1 COL15A1 chr9:101804389 5'GT 101804389 Upstream 37bp 9021 chr2 233195482 233195482 1 + T G UCEC 233195483 + 233195463 233195503 41 AACATGTGCTCCCGGCCCATGCAGGTAAGGAGGGCCCAGCC AACATGTGCTCCCGGCCCAGGCAGGTAAGGAGGGCCCAGCC < 41bp 0.724341868734693 0.389889233573135 NA NA prediction 0.448683737469386 Functional Loss - DIS3L2 ENSG00000144535 CDS Human protein_coding chr2:233195483 chr2:233195482 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9529 0 0 1 0 2 DIS3L2 chr2:233195400 3'AG 233195400 Downstream 83bp 9022 chr2 233195482 233195482 1 + T G UCEC 233195483 + 233195463 233195503 41 AACATGTGCTCCCGGCCCATGCAGGTAAGGAGGGCCCAGCC AACATGTGCTCCCGGCCCAGGCAGGTAAGGAGGGCCCAGCC < 41bp 0.724341868734693 0.389889233573135 NA NA prediction 0.448683737469386 Functional Loss - DIS3L2 ENSG00000144535 CDS Human protein_coding chr2:233195483 chr2:233195482 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9529 0 0 1 0 2 DIS3L2 chr2:233195486 5'GT 233195486 Upstream 5bp 9023 chr7 100484525 100484525 1 + A G STAD 100484526 + 100484506 100484546 41 AGCGGGGGCGCTCCTCCTGAGGAGCCTCCTAAGGAAGGGAA AGCGGGGGCGCTCCTCCTGGGGAGCCTCCTAAGGAAGGGAA < 41bp 0.724335189154416 0.499706736825018 NA NA prediction 0.448670378308832 Functional Loss - SRRT ENSG00000087087 CDS Human protein_coding chr7:100484526 chr7:100484525 nonsynonymous SNV 0.938 2 20 hm7G_associated_SNPs_9531 0 0 1 0 1 SRRT chr7:100484589 5'GT 100484589 Upstream 65bp 9024 chr1 55524262 55524262 1 + A G UCEC 55524263 + 55524243 55524283 41 CGCTGCGCCCCAGATGAGGAGCTGCTGAGCTGCTCCAGTTT CGCTGCGCCCCAGATGAGGGGCTGCTGAGCTGCTCCAGTTT < 41bp 0.751750225063877 0.527446485501107 NA NA prediction 0.44860747912554 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524263 chr1:55524262 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_9533 0 0 1 0 2 PCSK9 chr1:55524172 3'AG 55524172 Downstream 91bp 9025 chr1 55524262 55524262 1 + A G UCEC 55524263 + 55524243 55524283 41 CGCTGCGCCCCAGATGAGGAGCTGCTGAGCTGCTCCAGTTT CGCTGCGCCCCAGATGAGGGGCTGCTGAGCTGCTCCAGTTT < 41bp 0.751750225063877 0.527446485501107 NA NA prediction 0.44860747912554 Functional Loss - PCSK9 ENSG00000169174 CDS Human protein_coding chr1:55524263 chr1:55524262 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_9533 0 0 1 0 2 PCSK9 chr1:55524320 5'GT 55524320 Upstream 59bp 9026 chr16 70367483 70367483 1 + T G HNSC 70367484 + 70367464 70367504 41 GATTGAGAAAATAGCCAACTGAGAAGCTCCACCAGCCACTG GATTGAGAAAATAGCCAACGGAGAAGCTCCACCAGCCACTG < 41bp 0.724283523530549 0.397714121945036 NA NA prediction 0.448567047061097 Functional Loss - DDX19B ENSG00000157349 CDS Human protein_coding chr16:70367484 chr16:70367483 stoploss 1.000 0 20 hm7G_associated_SNPs_9534 0 0 1 0 1 DDX19B chr16:70367424 3'AG 70367424 Downstream 60bp 9027 chr17 48629527 48629527 1 + T G COAD 48629528 + 48629508 48629548 41 CTGGGGGCTGGCCTGCCCCTGCGTCTGAAGGACGGTCAGTG CTGGGGGCTGGCCTGCCCCGGCGTCTGAAGGACGGTCAGTG < 41bp 0.72425466649219 0.369795008300658 NA NA prediction 0.44850933298438 Functional Loss - SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48629528 chr17:48629527 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_9535 0 0 1 0 1 SPATA20 chr17:48629541 5'GT 48629541 Upstream 15bp 9028 chr8 43033365 43033365 1 + T G UCEC 43033366 + 43033346 43033386 41 CATTGTGAATCCCAATTATTGCCTTGGTCCATGTAAGTACT CATTGTGAATCCCAATTATGGCCTTGGTCCATGTAAGTACT < 41bp 0.724152137650242 0.391387070366328 NA NA prediction 0.448304275300484 Functional Loss - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43033366 chr8:43033365 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9538 0 0 1 0 1 HGSNAT chr8:43033377 5'GT 43033377 Upstream 13bp 9029 chr15 69327846 69327846 1 + T G UCEC 69327847 + 69327827 69327867 41 TGGCTCACACTGTGAACTTTGGTGAGTGATCTGGGGCAGGG TGGCTCACACTGTGAACTTGGGTGAGTGATCTGGGGCAGGG < 41bp 0.724136626947544 0.381777015482995 NA NA prediction 0.448273253895088 Functional Loss - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69327847 chr15:69327846 nonsynonymous SNV 0.857 2 20 hm7G_associated_SNPs_9539 0 0 0 0 1 NOX5 chr15:69327847 5'GT 69327847 Upstream 2bp 9030 chr7 100160505 100160505 1 + A G rs200071448 100160506 + 100160486 100160526 41 CCTTCACTAACCCTTTCACAGCTCCCGCCGCCCAGTCCCCG CCTTCACTAACCCTTTCACGGCTCCCGCCGCCCAGTCCCCG < 41bp 0.74581633270052 0.521708276997553 NA NA prediction 0.448216111405936 Functional Loss - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100160506 chr7:100160505 synonymous SNV . 0 20 hm7G_associated_SNPs_9541 0 0 1 0 2 AGFG2 chr7:100160486 3'AG 100160486 Downstream 20bp 9031 chr7 100160505 100160505 1 + A G rs200071448 100160506 + 100160486 100160526 41 CCTTCACTAACCCTTTCACAGCTCCCGCCGCCCAGTCCCCG CCTTCACTAACCCTTTCACGGCTCCCGCCGCCCAGTCCCCG < 41bp 0.74581633270052 0.521708276997553 NA NA prediction 0.448216111405936 Functional Loss - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100160506 chr7:100160505 synonymous SNV . 0 20 hm7G_associated_SNPs_9541 0 0 1 0 2 AGFG2 chr7:100160569 5'GT 100160569 Upstream 65bp 9032 chr15 63481897 63481897 1 + T G CESC 63481898 + 63481878 63481918 41 GTAGGCAAGACCTGCCTCCTGTTCCGCTTCTCAGAGGACGC GTAGGCAAGACCTGCCTCCGGTTCCGCTTCTCAGAGGACGC < 41bp 0.723982982797502 0.406924442938456 NA NA prediction 0.447965965595003 Functional Loss - RAB8B ENSG00000166128 CDS Human protein_coding chr15:63481898 chr15:63481897 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9546 0 0 1 0 1 RAB8B chr15:63481947 5'GT 63481947 Upstream 51bp 9033 chr16 2025602 2025602 1 + A G rs2230086 2025603 + 2025583 2025623 41 CAGCCGCCGGGCCCTGGGCAGGAGCTGACCCACTGCACCCT CAGCCGCCGGGCCCTGGGCGGGAGCTGACCCACTGCACCCT < 41bp 0.732729820283188 0.508771205645746 NA NA prediction 0.447917229274884 Functional Loss - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2025603 chr16:2025602 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_9547 0 0 1 0 1 TBL3 chr16:2025530 3'AG 2025530 Downstream 73bp 9034 chrX 22065195 22065195 1 + T G COAD 22065196 + 22065176 22065216 41 ATCTTAAGTAAAGTAAATCTGTCTGTGGATCCTTGTGATAA ATCTTAAGTAAAGTAAATCGGTCTGTGGATCCTTGTGATAA < 41bp 0.727145769617278 0.5031906287643 NA NA prediction 0.447910281705957 Functional Loss - PHEX ENSG00000102174 CDS Human protein_coding chrX:22065196 chrX:22065195 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_9548 0 0 0 0 1 PHEX chrX:22065168 3'AG 22065168 Downstream 28bp 9035 chr11 15262059 15262059 1 + T G HNSC 15262060 + 15262040 15262080 41 AGCAGTGACGCCGTGCTTGTGGCCTGCCTGGTGAGTTCTCA AGCAGTGACGCCGTGCTTGGGGCCTGCCTGGTGAGTTCTCA < 41bp 0.723932932278409 0.379254637280702 NA NA prediction 0.447865864556817 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15262060 chr11:15262059 nonsynonymous SNV 0.950 4 20 hm7G_associated_SNPs_9549 0 0 1 0 2 INSC chr11:15261993 3'AG 15261993 Downstream 67bp 9036 chr11 15262059 15262059 1 + T G HNSC 15262060 + 15262040 15262080 41 AGCAGTGACGCCGTGCTTGTGGCCTGCCTGGTGAGTTCTCA AGCAGTGACGCCGTGCTTGGGGCCTGCCTGGTGAGTTCTCA < 41bp 0.723932932278409 0.379254637280702 NA NA prediction 0.447865864556817 Functional Loss - INSC ENSG00000188487 CDS Human protein_coding chr11:15262060 chr11:15262059 nonsynonymous SNV 0.950 4 20 hm7G_associated_SNPs_9549 0 0 1 0 2 INSC chr11:15262069 5'GT 15262069 Upstream 11bp 9037 chr1 161123816 161123816 1 + T G UCEC 161123817 + 161123797 161123837 41 GAAGCCACGCGACGTGTTGTGTCTGAGATCCCGGTGCTGAA GAAGCCACGCGACGTGTTGGGTCTGAGATCCCGGTGCTGAA < 41bp 0.877516861309375 0.653622386710957 NA NA prediction 0.447788949196835 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161123817 chr1:161123816 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_9550 0 0 1 0 1 UFC1 chr1:161123910 5'GT 161123910 Upstream 95bp 9038 chr2 27820991 27820991 1 + T G SKCM 27820992 + 27820972 27821012 41 AGTACACTATCCCTCATGATGACTCCTTAAGTGGTTCATCG AGTACACTATCCCTCATGAGGACTCCTTAAGTGGTTCATCG < 41bp 0.794664305206863 0.57079411707369 NA NA prediction 0.447740376266345 Functional Loss - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27820992 chr2:27820991 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_9551 0 0 1 0 2 ZNF512 chr2:27820934 3'AG 27820934 Downstream 58bp 9039 chr2 27820991 27820991 1 + T G SKCM 27820992 + 27820972 27821012 41 AGTACACTATCCCTCATGATGACTCCTTAAGTGGTTCATCG AGTACACTATCCCTCATGAGGACTCCTTAAGTGGTTCATCG < 41bp 0.794664305206863 0.57079411707369 NA NA prediction 0.447740376266345 Functional Loss - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27820992 chr2:27820991 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_9551 0 0 1 0 2 ZNF512 chr2:27820937 3'AG 27820937 Downstream 55bp 9040 chr20 61428545 61428545 1 + T G BLCA 61428546 + 61428526 61428566 41 GGTCCCATCCAAGGTCATCTGGGACCATCTGAGCACCATGT GGTCCCATCCAAGGTCATCGGGGACCATCTGAGCACCATGT < 41bp 0.900441721192082 0.676589748769543 NA NA prediction 0.447703944845078 Functional Loss - MRGBP ENSG00000101189 CDS Human protein_coding chr20:61428546 chr20:61428545 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9552 0 0 1 0 2 MRGBP chr20:61428462 3'AG 61428462 Downstream 84bp 9041 chr20 61428545 61428545 1 + T G BLCA 61428546 + 61428526 61428566 41 GGTCCCATCCAAGGTCATCTGGGACCATCTGAGCACCATGT GGTCCCATCCAAGGTCATCGGGGACCATCTGAGCACCATGT < 41bp 0.900441721192082 0.676589748769543 NA NA prediction 0.447703944845078 Functional Loss - MRGBP ENSG00000101189 CDS Human protein_coding chr20:61428546 chr20:61428545 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9552 0 0 1 0 2 MRGBP chr20:61428583 5'GT 61428583 Upstream 39bp 9042 chr4 47405709 47405709 1 + T G PRAD 47405710 + 47405690 47405730 41 GGATCAACTATGATGCATCTGCAGCCAGAGTCGCACTAGGT GGATCAACTATGATGCATCGGCAGCCAGAGTCGCACTAGGT < 41bp 0.72383757239307 0.400325864190458 NA NA prediction 0.44767514478614 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47405710 chr4:47405709 synonymous SNV . 0 20 hm7G_associated_SNPs_9553 0 0 0 0 1 GABRB1 chr4:47405728 5'GT 47405728 Upstream 20bp 9043 chr7 19035652 19035652 1 + T G rs4607511 19035653 + 19035633 19035673 41 TTTATTTTTACAGAACTGCTGGTGAGCCTATGGAAGAGGAG TTTATTTTTACAGAACTGCGGGTGAGCCTATGGAAGAGGAG < 41bp 0.723735073353652 0.478899398032728 NA NA prediction 0.447470146707304 Functional Loss - HDAC9 ENSG00000048052 CDS Human protein_coding chr7:19035653 chr7:19035652 synonymous SNV . 0 20 hm7G_associated_SNPs_9558 0 0 0 0 1 HDAC9 chr7:19035646 3'AG 19035646 Downstream 7bp 9044 chr1 31819575 31819575 1 + T G COAD 31819576 + 31819556 31819596 41 GAACACTACCTGCAAGAAGTGTGGCTGTAAAGGTAGGGTGA GAACACTACCTGCAAGAAGGGTGGCTGTAAAGGTAGGGTGA < 41bp 0.885580704700405 0.661959473957787 NA NA prediction 0.447242461485235 Functional Loss - ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31819576 chr1:31819575 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9560 0 0 1 0 2 ZCCHC17 chr1:31819487 3'AG 31819487 Downstream 89bp 9045 chr1 31819575 31819575 1 + T G COAD 31819576 + 31819556 31819596 41 GAACACTACCTGCAAGAAGTGTGGCTGTAAAGGTAGGGTGA GAACACTACCTGCAAGAAGGGTGGCTGTAAAGGTAGGGTGA < 41bp 0.885580704700405 0.661959473957787 NA NA prediction 0.447242461485235 Functional Loss - ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31819576 chr1:31819575 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9560 0 0 1 0 2 ZCCHC17 chr1:31819587 5'GT 31819587 Upstream 13bp 9046 chr20 34572038 34572038 1 + T G COAD 34572039 + 34572019 34572059 41 GATCCCCACCCGAAATTGCTGCACAAGGGTAGCTGTTTTGG GATCCCCACCCGAAATTGCGGCACAAGGGTAGCTGTTTTGG < 41bp 0.723553927056343 0.402942782045558 NA NA prediction 0.447107854112686 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34572039 chr20:34572038 nonsynonymous SNV 0.144 5 20 hm7G_associated_SNPs_9563 0 0 0 0 1 CNBD2 chr20:34572060 5'GT 34572060 Upstream 23bp 9047 chr12 27944734 27944734 1 + T G ESCA 27944735 + 27944715 27944755 41 GTTACAACCCCGAGCAGGATGCGTGGAATTTTGTGGCGCCC GTTACAACCCCGAGCAGGAGGCGTGGAATTTTGTGGCGCCC < 41bp 0.900519054479877 0.67697043082958 NA NA prediction 0.447097247300593 Functional Loss - KLHL42 ENSG00000087448 CDS Human protein_coding chr12:27944735 chr12:27944734 nonsynonymous SNV 0.872 4 20 hm7G_associated_SNPs_9566 0 0 1 0 1 KLHL42 chr12:27944641 3'AG 27944641 Downstream 94bp 9048 chr3 33415165 33415165 1 + T G GBM 33415166 + 33415146 33415186 41 GTGCGAGGTTGTCGAGGCCTGAAAGCCCTGCTCCTGAGGGG GTGCGAGGTTGTCGAGGCCGGAAAGCCCTGCTCCTGAGGGG < 41bp 0.723420566778057 0.382847311142095 NA NA prediction 0.446841133556114 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33415166 chr3:33415165 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_9568 0 0 0 0 2 FBXL2 chr3:33415070 3'AG 33415070 Downstream 96bp 9049 chr3 33415165 33415165 1 + T G GBM 33415166 + 33415146 33415186 41 GTGCGAGGTTGTCGAGGCCTGAAAGCCCTGCTCCTGAGGGG GTGCGAGGTTGTCGAGGCCGGAAAGCCCTGCTCCTGAGGGG < 41bp 0.723420566778057 0.382847311142095 NA NA prediction 0.446841133556114 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33415166 chr3:33415165 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_9568 0 0 0 0 2 FBXL2 chr3:33415196 5'GT 33415196 Upstream 32bp 9050 chr2 9515028 9515028 1 + T G STAD 9515029 + 9515009 9515049 41 GATTGCTCCAAGCTTATGCTGATGGTGTGGATCTTACGGAA GATTGCTCCAAGCTTATGCGGATGGTGTGGATCTTACGGAA < 41bp 0.723344867394641 0.386227810827054 NA NA prediction 0.446689734789282 Functional Loss - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9515029 chr2:9515028 synonymous SNV . 0 20 hm7G_associated_SNPs_9569 0 0 1 0 1 ASAP2 chr2:9515073 5'GT 9515073 Upstream 46bp 9051 chr19 41704648 41704648 1 + T G OV 41704649 + 41704629 41704669 41 TCCTGGTTCCTGCGGCCCCTGCCAGGCCCCCACAAGCAGCT TCCTGGTTCCTGCGGCCCCGGCCAGGCCCCCACAAGCAGCT < 41bp 0.723341994023134 0.364033062034662 NA NA prediction 0.446683988046267 Functional Loss - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41704649 chr19:41704648 nonsynonymous SNV 0.961 3 20 hm7G_associated_SNPs_9570 0 0 0 0 1 CYP2S1 chr19:41704614 3'AG 41704614 Downstream 35bp 9052 chr16 231069 231069 1 + A G STAD 231070 + 231050 231090 41 GTCGCTGGACAAGTTCCTGAGCCACGTTATCTCGGCGCTGG GTCGCTGGACAAGTTCCTGGGCCACGTTATCTCGGCGCTGG < 41bp 0.725250350144619 0.501956325072426 NA NA prediction 0.446588050144386 Functional Loss - HBQ1 ENSG00000086506 CDS Human protein_coding chr16:231070 chr16:231069 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_9572 0 0 1 0 1 HBQ1 chr16:230979 3'AG 230979 Downstream 91bp 9053 chr17 73569096 73569096 1 + T G SKCM 73569097 + 73569077 73569117 41 ACCACCCCACGCCCCCAGGTGTTCACGCTGCCCAAGGTGAG ACCACCCCACGCCCCCAGGGGTTCACGCTGCCCAAGGTGAG < 41bp 0.723255040749049 0.376236061313341 NA NA prediction 0.446510081498098 Functional Loss - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73569097 chr17:73569096 nonsynonymous SNV 0.921 4 20 hm7G_associated_SNPs_9575 0 0 1 0 1 LLGL2 chr17:73569095 3'AG 73569095 Downstream 2bp 9054 chr15 55647046 55647046 1 + T G SKCM 55647047 + 55647027 55647067 41 CTCCAGTGCCCGCCAGACCTGACTGGAAAAAGTCATTATCT CTCCAGTGCCCGCCAGACCGGACTGGAAAAAGTCATTATCT < 41bp 0.886590146448601 0.663532131999309 NA NA prediction 0.446116028898583 Functional Loss - PIGB ENSG00000069943 CDS Human protein_coding chr15:55647047 chr15:55647046 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_9579 0 0 0 0 1 PIGB chr15:55646996 3'AG 55646996 Downstream 51bp 9055 chr19 17384808 17384808 1 + T G LUSC 17384809 + 17384789 17384829 41 AGCCACGAGTTTGCACTGGTGGTGGTGAACGATGACACGGC AGCCACGAGTTTGCACTGGGGGTGGTGAACGATGACACGGC < 41bp 0.723005928938672 0.393192818761777 NA NA prediction 0.446011857877344 Functional Loss - BABAM1 ENSG00000105393;ENSG00000269307 CDS Human other chr19:17384809 chr19:17384808 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_9581 0 0 1 2 2 BABAM1 chr19:17384713 3'AG 17384713 Downstream 96bp 9056 chr19 17384808 17384808 1 + T G LUSC 17384809 + 17384789 17384829 41 AGCCACGAGTTTGCACTGGTGGTGGTGAACGATGACACGGC AGCCACGAGTTTGCACTGGGGGTGGTGAACGATGACACGGC < 41bp 0.723005928938672 0.393192818761777 NA NA prediction 0.446011857877344 Functional Loss - BABAM1 ENSG00000105393;ENSG00000269307 CDS Human other chr19:17384809 chr19:17384808 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_9581 0 0 1 2 2 BABAM1 chr19:17384833 5'GT 17384833 Upstream 26bp 9057 chr1 161068491 161068491 1 + A G rs540031045 161068492 + 161068472 161068512 41 AGGAGCGAGAGAGCCCAGCAGCGATACGGTGGTTTTCGACC AGGAGCGAGAGAGCCCAGCGGCGATACGGTGGTTTTCGACC < 41bp 0.746623644308812 0.523632182344221 NA NA prediction 0.445982923929183 Functional Loss - KLHDC9 ENSG00000162755 CDS Human protein_coding chr1:161068492 chr1:161068491 nonsynonymous SNV 0.520 0 20 hm7G_associated_SNPs_9582 0 0 0 0 1 KLHDC9 chr1:161068456 3'AG 161068456 Downstream 36bp 9058 chr7 16823117 16823117 1 + T G rs17136588 16823118 + 16823098 16823138 41 TCCTAGTGCATTCCTTTGATGAGAAAACAAGGAAGATTTCC TCCTAGTGCATTCCTTTGAGGAGAAAACAAGGAAGATTTCC < 41bp 0.866010957706201 0.643060075288463 NA NA prediction 0.445901764835476 Functional Loss - TSPAN13 ENSG00000106537 UTR3 Human protein_coding chr7:16823118 chr7:16823117 . . 0 20 hm7G_associated_SNPs_9583 0 0 1 0 1 TSPAN13 chr7:16823042 3'AG 16823042 Downstream 76bp 9059 chrX 152822411 152822411 1 + T G BRCA 152822412 + 152822392 152822432 41 ACTGGTGAGCAGCGGCAGGTGGTGGCTGTGACAGGGGATGG ACTGGTGAGCAGCGGCAGGGGGTGGCTGTGACAGGGGATGG < 41bp 0.907364595122198 0.684532415708297 NA NA prediction 0.445664358827802 Functional Loss - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152822412 chrX:152822411 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9584 0 0 0 0 2 ATP2B3 chrX:152822375 3'AG 152822375 Downstream 37bp 9060 chrX 152822411 152822411 1 + T G BRCA 152822412 + 152822392 152822432 41 ACTGGTGAGCAGCGGCAGGTGGTGGCTGTGACAGGGGATGG ACTGGTGAGCAGCGGCAGGGGGTGGCTGTGACAGGGGATGG < 41bp 0.907364595122198 0.684532415708297 NA NA prediction 0.445664358827802 Functional Loss - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152822412 chrX:152822411 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9584 0 0 0 0 2 ATP2B3 chrX:152822481 5'GT 152822481 Upstream 71bp 9061 chr7 138865867 138865867 1 + T G UCEC 138865868 + 138865848 138865888 41 TAAGAAACCAAGACTAGCCTGGGAACTTTATCTTAAGATGG TAAGAAACCAAGACTAGCCGGGGAACTTTATCTTAAGATGG < 41bp 0.722725336979546 0.406618802539488 NA NA prediction 0.445450673959091 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138865868 chr7:138865867 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9589 0 0 0 0 2 TTC26 chr7:138865838 3'AG 138865838 Downstream 30bp 9062 chr7 138865867 138865867 1 + T G UCEC 138865868 + 138865848 138865888 41 TAAGAAACCAAGACTAGCCTGGGAACTTTATCTTAAGATGG TAAGAAACCAAGACTAGCCGGGGAACTTTATCTTAAGATGG < 41bp 0.722725336979546 0.406618802539488 NA NA prediction 0.445450673959091 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138865868 chr7:138865867 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9589 0 0 0 0 2 TTC26 chr7:138865944 5'GT 138865944 Upstream 78bp 9063 chr1 161681069 161681069 1 + T G UCEC 161681070 + 161681050 161681090 41 GGTTCTGCGCTGCCAGGCCTGGCAAGACTGGCCACTGACTC GGTTCTGCGCTGCCAGGCCGGGCAAGACTGGCCACTGACTC < 41bp 0.722725223746943 0.428180424977805 NA NA prediction 0.445450447493886 Functional Loss - FCRLA ENSG00000132185 CDS Human protein_coding chr1:161681070 chr1:161681069 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_9590 0 0 1 0 1 FCRLA chr1:161680998 3'AG 161680998 Downstream 72bp 9064 chr12 3686064 3686064 1 + T G OV 3686065 + 3686045 3686085 41 AATGTCTATGGCTTTGACATGACCTGCATCCGGGACGTGGC AATGTCTATGGCTTTGACAGGACCTGCATCCGGGACGTGGC < 41bp 0.897970493224095 0.675341675587354 NA NA prediction 0.445257635273481 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3686065 chr12:3686064 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9593 0 0 0 0 1 PRMT8 chr12:3686152 5'GT 3686152 Upstream 89bp 9065 chr17 26821460 26821460 1 + T G SKCM 26821461 + 26821441 26821481 41 CTCCTCGACTGGAAGACGGTGAACCAGAAGATGCCGTGGAA CTCCTCGACTGGAAGACGGGGAACCAGAAGATGCCGTGGAA < 41bp 0.903591685504957 0.681083080670228 NA NA prediction 0.445017209669459 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26821461 chr17:26821460 nonsynonymous SNV 0.628 3 20 hm7G_associated_SNPs_9596 0 0 0 0 2 SLC13A2 chr17:26821409 3'AG 26821409 Downstream 52bp 9066 chr17 26821460 26821460 1 + T G SKCM 26821461 + 26821441 26821481 41 CTCCTCGACTGGAAGACGGTGAACCAGAAGATGCCGTGGAA CTCCTCGACTGGAAGACGGGGAACCAGAAGATGCCGTGGAA < 41bp 0.903591685504957 0.681083080670228 NA NA prediction 0.445017209669459 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26821461 chr17:26821460 nonsynonymous SNV 0.628 3 20 hm7G_associated_SNPs_9596 0 0 0 0 2 SLC13A2 chr17:26821530 5'GT 26821530 Upstream 71bp 9067 chr9 131804612 131804612 1 + A G SKCM 131804613 + 131804593 131804633 41 CCCAGCTACGGTTGACGCCAGGCCTGCGGAAAGTCCTCTTT CCCAGCTACGGTTGACGCCGGGCCTGCGGAAAGTCCTCTTT < 41bp 0.748290796729815 0.525790024325295 NA NA prediction 0.445001544809041 Functional Loss - MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131804613 chr9:131804612 synonymous SNV . 0 20 hm7G_associated_SNPs_9597 0 0 1 0 1 MIGA2 chr9:131804583 3'AG 131804583 Downstream 30bp 9068 chr2 220500423 220500423 1 + A G rs589767 220500424 + 220500404 220500444 41 TGGAGTTGGGGGGCTCTGAAGCAACCCCTGAAGATGACCCC TGGAGTTGGGGGGCTCTGAGGCAACCCCTGAAGATGACCCC < 41bp 0.739364995341496 0.516939046408448 NA NA prediction 0.444851897866096 Functional Loss - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220500424 chr2:220500423 synonymous SNV . 0 20 hm7G_associated_SNPs_9599 0 0 0 0 1 SLC4A3 chr2:220500395 3'AG 220500395 Downstream 29bp 9069 chr9 32634987 32634987 1 + T G UCEC 32634988 + 32634968 32635008 41 TACTGAAATCCACTTTCTCTGAGGCCAAAAAGGAAGGGGCA TACTGAAATCCACTTTCTCGGAGGCCAAAAAGGAAGGGGCA < 41bp 0.877669989627967 0.65527795482795 NA NA prediction 0.444784069600034 Functional Loss - TAF1L ENSG00000122728 CDS Human protein_coding chr9:32634988 chr9:32634987 synonymous SNV . 0 20 hm7G_associated_SNPs_9601 0 0 0 0 1 TAF1L chr9:32635053 5'GT 32635053 Upstream 67bp 9070 chr8 2048808 2048808 1 + T G COAD 2048809 + 2048789 2048829 41 ATGCTGGAGAGTGGATCACTGTAAATCAGACGACAACAGCC ATGCTGGAGAGTGGATCACGGTAAATCAGACGACAACAGCC < 41bp 0.72236597542473 0.38753736210015 NA NA prediction 0.44473195084946 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2048809 chr8:2048808 synonymous SNV . 0 20 hm7G_associated_SNPs_9602 0 0 0 0 1 MYOM2 chr8:2048844 5'GT 2048844 Upstream 37bp 9071 chrX 69712059 69712059 1 + T G SKCM 69712060 + 69712040 69712080 41 TCATTAATGCCTCTGATGATGAGTGGTGGCAGGCAAGGCTG TCATTAATGCCTCTGATGAGGAGTGGTGGCAGGCAAGGCTG < 41bp 0.900596079907475 0.678313931907962 NA NA prediction 0.444564295999026 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69712060 chrX:69712059 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9603 0 0 1 0 1 DLG3 chrX:69712133 5'GT 69712133 Upstream 75bp 9072 chr17 77079895 77079895 1 + T G BLCA 77079896 + 77079876 77079916 41 GCCCAGGAGATCCAGCCCTTGTTTGGAGAACACAGGCTGGG GCCCAGGAGATCCAGCCCTGGTTTGGAGAACACAGGCTGGG < 41bp 0.722253675970107 0.375442819856323 NA NA prediction 0.444507351940215 Functional Loss - ENGASE ENSG00000167280 CDS Human protein_coding chr17:77079896 chr17:77079895 nonsynonymous SNV 0.433 2 20 hm7G_associated_SNPs_9604 0 0 0 0 1 ENGASE chr17:77079843 3'AG 77079843 Downstream 53bp 9073 chr2 73115530 73115530 1 + T G COAD 73115531 + 73115511 73115551 41 GCACTGAACTTGACCTCCATGCTCTGCCTGACTTCCAGCGT GCACTGAACTTGACCTCCAGGCTCTGCCTGACTTCCAGCGT < 41bp 0.722250953229336 0.387885749054671 NA NA prediction 0.444501906458671 Functional Loss - SPR ENSG00000116096 CDS Human protein_coding chr2:73115531 chr2:73115530 nonsynonymous SNV 0.902 2 20 hm7G_associated_SNPs_9605 0 0 1 0 1 SPR chr2:73115443 3'AG 73115443 Downstream 88bp 9074 chr5 147693732 147693732 1 + T G SKCM 147693733 + 147693713 147693753 41 CATCACATACCTACCAGTTTGTGGTTCTGACTACATCACCT CATCACATACCTACCAGTTGGTGGTTCTGACTACATCACCT < 41bp 0.722199233544097 0.396378274153872 NA NA prediction 0.444398467088194 Functional Loss - SPINK7 ENSG00000145879 CDS Human protein_coding chr5:147693733 chr5:147693732 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_9606 0 0 0 0 2 SPINK7 chr5:147693663 3'AG 147693663 Downstream 70bp 9075 chr5 147693732 147693732 1 + T G SKCM 147693733 + 147693713 147693753 41 CATCACATACCTACCAGTTTGTGGTTCTGACTACATCACCT CATCACATACCTACCAGTTGGTGGTTCTGACTACATCACCT < 41bp 0.722199233544097 0.396378274153872 NA NA prediction 0.444398467088194 Functional Loss - SPINK7 ENSG00000145879 CDS Human protein_coding chr5:147693733 chr5:147693732 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_9606 0 0 0 0 2 SPINK7 chr5:147693787 5'GT 147693787 Upstream 56bp 9076 chr7 98895388 98895388 1 + T G rs114209130 98895389 + 98895369 98895409 41 GAAAAGGAAGAACTCCAGGTGGCCCTGGAAGAAGCTGAGTC GAAAAGGAAGAACTCCAGGGGGCCCTGGAAGAAGCTGAGTC < 41bp 0.873125980461051 0.650961214653843 NA NA prediction 0.444329531614416 Functional Loss - MYH16 ENSG00000002079 ncRNA_exonic Human transcribed_unitary_pseudogene chr7:98895389 chr7:98895388 . . 0 20 hm7G_associated_SNPs_9608 0 0 0 0 1 MYH16 chr7:98895419 5'GT 98895419 Upstream 32bp 9077 chr14 65479091 65479091 1 + T G UCEC 65479092 + 65479072 65479112 41 AAAAGAGGCCTTCGACAACTGACAGATGCCTATGAGGTAAA AAAAGAGGCCTTCGACAACGGACAGATGCCTATGAGGTAAA < 41bp 0.722116038331569 0.380083752930343 NA NA prediction 0.444232076663139 Functional Loss - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65479092 chr14:65479091 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9610 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65479035 3'AG 65479035 Downstream 57bp 9078 chr14 65479091 65479091 1 + T G UCEC 65479092 + 65479072 65479112 41 AAAAGAGGCCTTCGACAACTGACAGATGCCTATGAGGTAAA AAAAGAGGCCTTCGACAACGGACAGATGCCTATGAGGTAAA < 41bp 0.722116038331569 0.380083752930343 NA NA prediction 0.444232076663139 Functional Loss - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65479092 chr14:65479091 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9610 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65479107 5'GT 65479107 Upstream 17bp 9079 chr1 1458255 1458255 1 + T G rs28675990 1458256 + 1458236 1458276 41 CGTCCCGCATCACGGTGCTTGAGGCGCTGCGGCACCCCATC CGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCCATC < 41bp 0.722099137952828 0.376515251819966 NA NA prediction 0.444198275905655 Functional Loss - ATAD3A ENSG00000197785 CDS Human protein_coding chr1:1458256 chr1:1458255 synonymous SNV . 0 20 hm7G_associated_SNPs_9611 0 0 1 0 1 ATAD3A chr1:1458279 5'GT 1458279 Upstream 25bp 9080 chr2 71191937 71191937 1 + T G rs147250093 71191938 + 71191918 71191958 41 GGGAGGAGGCGCTCACCTCTGAGGACCTGCTCTACCTGGAA GGGAGGAGGCGCTCACCTCGGAGGACCTGCTCTACCTGGAA < 41bp 0.721946056825346 0.370441661522306 NA NA prediction 0.443892113650691 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71191938 chr2:71191937 synonymous SNV . 0 20 hm7G_associated_SNPs_9614 2 0 0 1 1 ATP6V1B1 chr2:71191866 3'AG 71191866 Downstream 72bp 9081 chr20 18488579 18488579 1 + T G rs191103191 18488580 + 18488560 18488600 41 GGCGGTGGGAGCCGGAGCCTGCTTGTTGCAGCTGTGGGTGA GGCGGTGGGAGCCGGAGCCGGCTTGTTGCAGCTGTGGGTGA < 41bp 0.772104115646197 0.550265423824538 NA NA prediction 0.443677383643319 Functional Loss - SEC23B ENSG00000101310 UTR5 Human protein_coding chr20:18488580 chr20:18488579 . . 0 20 hm7G_associated_SNPs_9616 1 0 1 0 2 SEC23B chr20:18488616 5'GT 18488616 Upstream 38bp 9082 chr20 18488579 18488579 1 + T G rs191103191 18488580 + 18488560 18488600 41 GGCGGTGGGAGCCGGAGCCTGCTTGTTGCAGCTGTGGGTGA GGCGGTGGGAGCCGGAGCCGGCTTGTTGCAGCTGTGGGTGA < 41bp 0.772104115646197 0.550265423824538 NA NA prediction 0.443677383643319 Functional Loss - SEC23B ENSG00000101310 UTR5 Human protein_coding chr20:18488580 chr20:18488579 . . 0 20 hm7G_associated_SNPs_9616 1 0 1 0 2 SEC23B chr20:18488634 5'GT 18488634 Upstream 56bp 9083 chr19 5720756 5720756 1 + T G UCEC 5720757 + 5720737 5720777 41 AAGCCCAAGTCGATGCTGATGTTGATGCTGGTGGCGGCTGT AAGCCCAAGTCGATGCTGAGGTTGATGCTGGTGGCGGCTGT < 41bp 0.721821825590304 0.400983717727822 NA NA prediction 0.443643651180609 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5720757 chr19:5720756 nonsynonymous SNV 0.014 1 20 hm7G_associated_SNPs_9617 0 0 0 0 1 CATSPERD chr19:5720819 5'GT 5720819 Upstream 64bp 9084 chr3 195390989 195390989 1 + T G UCEC 195390990 + 195390970 195391010 41 GCATGCCGTTTAGCAGAACTGAAGATGGGAAGATTTATCAG GCATGCCGTTTAGCAGAACGGAAGATGGGAAGATTTATCAG < 41bp 0.880845969745088 0.659061422643508 NA NA prediction 0.443569094203161 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195390990 chr3:195390989 . . 0 20 hm7G_associated_SNPs_9619 0 0 1 0 1 SDHAP2 chr3:195390957 3'AG 195390957 Downstream 33bp 9085 chr21 43833327 43833327 1 + A G COAD 43833328 + 43833308 43833348 41 CCACGGAAGCATCTCTCTTAGCAGGTGGGCAGCCCTGGCCA CCACGGAAGCATCTCTCTTGGCAGGTGGGCAGCCCTGGCCA < 41bp 0.721776567552835 0.499256283870523 NA NA prediction 0.443553135105669 Functional Loss - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43833328 chr21:43833327 synonymous SNV . 0 20 hm7G_associated_SNPs_9620 0 0 0 0 1 UBASH3A chr21:43833331 5'GT 43833331 Upstream 5bp 9086 chr16 53499487 53499487 1 + T G LUSC 53499488 + 53499468 53499508 41 GGGAAAAAATTAGAGACAATGAAAACAGAGTTCCTACATGT GGGAAAAAATTAGAGACAAGGAAAACAGAGTTCCTACATGT < 41bp 0.721696782198041 0.392959717805375 NA NA prediction 0.443393564396082 Functional Loss - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53499488 chr16:53499487 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9623 0 0 0 0 1 RBL2 chr16:53499514 5'GT 53499514 Upstream 28bp 9087 chr20 3564634 3564634 1 + T G OV 3564635 + 3564615 3564655 41 CAGCTCTGAGTGCATGTGGTGCAGCAACATGAAGCAGTGTG CAGCTCTGAGTGCATGTGGGGCAGCAACATGAAGCAGTGTG < 41bp 0.721535269221331 0.378732354463954 NA NA prediction 0.443070538442662 Functional Loss - ATRN ENSG00000088812 CDS Human protein_coding chr20:3564635 chr20:3564634 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9624 0 0 1 0 2 ATRN chr20:3564545 3'AG 3564545 Downstream 90bp 9088 chr20 3564634 3564634 1 + T G OV 3564635 + 3564615 3564655 41 CAGCTCTGAGTGCATGTGGTGCAGCAACATGAAGCAGTGTG CAGCTCTGAGTGCATGTGGGGCAGCAACATGAAGCAGTGTG < 41bp 0.721535269221331 0.378732354463954 NA NA prediction 0.443070538442662 Functional Loss - ATRN ENSG00000088812 CDS Human protein_coding chr20:3564635 chr20:3564634 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9624 0 0 1 0 2 ATRN chr20:3564730 5'GT 3564730 Upstream 97bp 9089 chr15 92981642 92981642 1 + T G LUSC 92981643 + 92981623 92981663 41 TCTGTCCTAAAGGGAACCCTGAAGCCTGGAGATATTATTCA TCTGTCCTAAAGGGAACCCGGAAGCCTGGAGATATTATTCA < 41bp 0.897742269430627 0.676255955800447 NA NA prediction 0.442972627260359 Functional Loss - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92981643 chr15:92981642 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9625 0 0 0 0 1 ST8SIA2 chr15:92981583 3'AG 92981583 Downstream 60bp 9090 chr15 42139617 42139617 1 + A G LIHC 42139618 + 42139598 42139638 41 AGCCCCGAAGAGCAGCTCCAGCCTCGGGAGTGCCACACCTT AGCCCCGAAGAGCAGCTCCGGCCTCGGGAGTGCCACACCTT < 41bp 0.734760750801096 0.513347103332473 NA NA prediction 0.442827294937246 Functional Loss - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42139618 chr15:42139617 nonsynonymous SNV 0.046 0 20 hm7G_associated_SNPs_9628 0 0 0 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42139535 3'AG 42139535 Downstream 83bp 9091 chr9 119460027 119460027 1 + T G rs141352486 119460028 + 119460008 119460048 41 TCAAAGGAAGAGCAATGGCTGCAGCAGCAGCTTCTCACCTG TCAAAGGAAGAGCAATGGCGGCAGCAGCAGCTTCTCACCTG < 41bp 0.883239788265881 0.661851143136054 NA NA prediction 0.442777290259654 Functional Loss - TRIM32 ENSG00000119401 CDS Human protein_coding chr9:119460028 chr9:119460027 synonymous SNV . 0 20 hm7G_associated_SNPs_9629 2 0 1 0 2 TRIM32 chr9:119459941 3'AG 119459941 Downstream 87bp 9092 chr9 119460027 119460027 1 + T G rs141352486 119460028 + 119460008 119460048 41 TCAAAGGAAGAGCAATGGCTGCAGCAGCAGCTTCTCACCTG TCAAAGGAAGAGCAATGGCGGCAGCAGCAGCTTCTCACCTG < 41bp 0.883239788265881 0.661851143136054 NA NA prediction 0.442777290259654 Functional Loss - TRIM32 ENSG00000119401 CDS Human protein_coding chr9:119460028 chr9:119460027 synonymous SNV . 0 20 hm7G_associated_SNPs_9629 2 0 1 0 2 TRIM32 chr9:119459944 3'AG 119459944 Downstream 84bp 9093 chr19 10742002 10742002 1 + A G LIHC 10742003 + 10741983 10742023 41 CACGTACCTGAATGCTCGCAGCTCCCGGGACTTTGAGTACT CACGTACCTGAATGCTCGCGGCTCCCGGGACTTTGAGTACT < 41bp 0.733640516234439 0.512278957173937 NA NA prediction 0.442723118121004 Functional Loss - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10742003 chr19:10742002 nonsynonymous SNV 0.179 0 20 hm7G_associated_SNPs_9630 0 0 1 0 2 SLC44A2 chr19:10741951 3'AG 10741951 Downstream 52bp 9094 chr19 10742002 10742002 1 + A G LIHC 10742003 + 10741983 10742023 41 CACGTACCTGAATGCTCGCAGCTCCCGGGACTTTGAGTACT CACGTACCTGAATGCTCGCGGCTCCCGGGACTTTGAGTACT < 41bp 0.733640516234439 0.512278957173937 NA NA prediction 0.442723118121004 Functional Loss - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10742003 chr19:10742002 nonsynonymous SNV 0.179 0 20 hm7G_associated_SNPs_9630 0 0 1 0 2 SLC44A2 chr19:10742061 5'GT 10742061 Upstream 60bp 9095 chr12 123465786 123465786 1 + A G DLBC 123465787 + 123465767 123465807 41 GAGCAGGAAAGACACCTCGAGGAACTGCTCGGCCTCCACAT GAGCAGGAAAGACACCTCGGGGAACTGCTCGGCCTCCACAT < 41bp 0.756088275009555 0.534732315890356 NA NA prediction 0.442711918238399 Functional Loss - ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123465787 chr12:123465786 nonsynonymous SNV 0.017 1 20 hm7G_associated_SNPs_9631 0 0 1 0 1 ARL6IP4 chr12:123465813 5'GT 123465813 Upstream 28bp 9096 chr12 72274263 72274263 1 + T G SKCM 72274264 + 72274244 72274284 41 TTTAGGACTCCAGTTCAGTTGTAGAATGGACTCAGGCCCCA TTTAGGACTCCAGTTCAGTGGTAGAATGGACTCAGGCCCCA < 41bp 0.721351599818476 0.402588231905441 NA NA prediction 0.442703199636953 Functional Loss - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72274264 chr12:72274263 synonymous SNV . 0 20 hm7G_associated_SNPs_9632 0 0 1 0 1 TBC1D15 chr12:72274249 3'AG 72274249 Downstream 15bp 9097 chr1 177247722 177247722 1 + A G TGCT 177247723 + 177247703 177247743 41 GTTCCAGGCCCTGCTGAAAAGGCTGCCCGATGACCGGTTCC GTTCCAGGCCCTGCTGAAAGGGCTGCCCGATGACCGGTTCC < 41bp 0.721841325382104 0.500489767312794 NA NA prediction 0.44270311613862 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177247723 chr1:177247722 nonsynonymous SNV 0.945 3 20 hm7G_associated_SNPs_9633 0 0 0 0 1 BRINP2 chr1:177247699 3'AG 177247699 Downstream 24bp 9098 chr20 31608171 31608171 1 + T G SKCM 31608172 + 31608152 31608192 41 CAGCTCTCTGTGTCCAAGGTGAAGCTTCAGGGGACCACGTC CAGCTCTCTGTGTCCAAGGGGAAGCTTCAGGGGACCACGTC < 41bp 0.898603708404306 0.677345158865304 NA NA prediction 0.442517099078004 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31608172 chr20:31608171 nonsynonymous SNV 0.976 0 20 hm7G_associated_SNPs_9635 0 0 1 0 2 BPIFB2 chr20:31608134 3'AG 31608134 Downstream 38bp 9099 chr20 31608171 31608171 1 + T G SKCM 31608172 + 31608152 31608192 41 CAGCTCTCTGTGTCCAAGGTGAAGCTTCAGGGGACCACGTC CAGCTCTCTGTGTCCAAGGGGAAGCTTCAGGGGACCACGTC < 41bp 0.898603708404306 0.677345158865304 NA NA prediction 0.442517099078004 Functional Loss - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31608172 chr20:31608171 nonsynonymous SNV 0.976 0 20 hm7G_associated_SNPs_9635 0 0 1 0 2 BPIFB2 chr20:31608201 5'GT 31608201 Upstream 31bp 9100 chr6 34495239 34495239 1 + A G rs201041422 34495240 + 34495220 34495260 41 CAGCTCACCGACTGGGCCAAGCGTTGGCGCCAGCTCATCGA CAGCTCACCGACTGGGCCAGGCGTTGGCGCCAGCTCATCGA < 41bp 0.722945049007854 0.501704850333902 NA NA prediction 0.442480397347904 Functional Loss - PACSIN1 ENSG00000124507 CDS Human protein_coding chr6:34495240 chr6:34495239 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9636 0 0 0 0 1 PACSIN1 chr6:34495265 5'GT 34495265 Upstream 27bp 9101 chr22 40803830 40803830 1 + A G COAD 40803831 + 40803811 40803851 41 GAGCACTGCTGGGTGGGGGAGCTCAACGGCCTGCGAGGTGG GAGCACTGCTGGGTGGGGGGGCTCAACGGCCTGCGAGGTGG < 41bp 0.737641523555037 0.516418041535263 NA NA prediction 0.442446964039547 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803831 chr22:40803830 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_9637 0 0 1 0 2 SGSM3 chr22:40803793 3'AG 40803793 Downstream 38bp 9102 chr22 40803830 40803830 1 + A G COAD 40803831 + 40803811 40803851 41 GAGCACTGCTGGGTGGGGGAGCTCAACGGCCTGCGAGGTGG GAGCACTGCTGGGTGGGGGGGCTCAACGGCCTGCGAGGTGG < 41bp 0.737641523555037 0.516418041535263 NA NA prediction 0.442446964039547 Functional Loss - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803831 chr22:40803830 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_9637 0 0 1 0 2 SGSM3 chr22:40803847 5'GT 40803847 Upstream 18bp 9103 chr1 55452036 55452036 1 + A G rs56889206 55452037 + 55452017 55452057 41 CCGTCAAGGCCAGCATCCCAGGGCCACCTCGATGGGACCCC CCGTCAAGGCCAGCATCCCGGGGCCACCTCGATGGGACCCC < 41bp 0.720936853694891 0.491400006479609 NA NA prediction 0.441873707389782 Functional Loss - TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55452037 chr1:55452036 synonymous SNV . 0 20 hm7G_associated_SNPs_9642 0 0 0 0 1 TMEM61 chr1:55452119 5'GT 55452119 Upstream 84bp 9104 chrX 19369421 19369421 1 + A G UCEC 19369422 + 19369402 19369442 41 GCTTGCTGTGTGGGCCTGGAGGCCGGCATCAACCCCACAGA GCTTGCTGTGTGGGCCTGGGGGCCGGCATCAACCCCACAGA < 41bp 0.725121122451438 0.504232395157684 NA NA prediction 0.441777454587506 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19369422 chrX:19369421 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_9644 0 0 1 0 2 PDHA1 chrX:19369378 3'AG 19369378 Downstream 44bp 9105 chrX 19369421 19369421 1 + A G UCEC 19369422 + 19369402 19369442 41 GCTTGCTGTGTGGGCCTGGAGGCCGGCATCAACCCCACAGA GCTTGCTGTGTGGGCCTGGGGGCCGGCATCAACCCCACAGA < 41bp 0.725121122451438 0.504232395157684 NA NA prediction 0.441777454587506 Functional Loss - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19369422 chrX:19369421 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_9644 0 0 1 0 2 PDHA1 chrX:19369399 3'AG 19369399 Downstream 23bp 9106 chr6 35745326 35745326 1 + A G UCEC 35745327 + 35745307 35745347 41 TGGAGCCTTCTGTGCCCCCAGGGCCAGAATAACCATGATCT TGGAGCCTTCTGTGCCCCCGGGGCCAGAATAACCATGATCT < 41bp 0.729714687456536 0.508855543034541 NA NA prediction 0.441718288843989 Functional Loss - CLPSL2 ENSG00000196748 CDS Human protein_coding chr6:35745327 chr6:35745326 nonsynonymous SNV 0.243 1 20 hm7G_associated_SNPs_9645 0 0 0 0 2 CLPSL2 chr6:35745236 3'AG 35745236 Downstream 91bp 9107 chr6 35745326 35745326 1 + A G UCEC 35745327 + 35745307 35745347 41 TGGAGCCTTCTGTGCCCCCAGGGCCAGAATAACCATGATCT TGGAGCCTTCTGTGCCCCCGGGGCCAGAATAACCATGATCT < 41bp 0.729714687456536 0.508855543034541 NA NA prediction 0.441718288843989 Functional Loss - CLPSL2 ENSG00000196748 CDS Human protein_coding chr6:35745327 chr6:35745326 nonsynonymous SNV 0.243 1 20 hm7G_associated_SNPs_9645 0 0 0 0 2 CLPSL2 chr6:35745358 5'GT 35745358 Upstream 33bp 9108 chr15 29060651 29060651 1 + T G rs574284635 29060652 + 29060632 29060672 41 TAAATGAAGAAGCTCTTTCTGTTACTGAACTAGATCGAGTC TAAATGAAGAAGCTCTTTCGGTTACTGAACTAGATCGAGTC < 41bp 0.720832102603334 0.424389323908231 NA NA prediction 0.441664205206669 Functional Loss - PDCD6IPP2 ENSG00000261377 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:29060652 chr15:29060651 . . 0 20 hm7G_associated_SNPs_9646 0 0 0 0 1 PDCD6IPP2 chr15:29060741 5'GT 29060741 Upstream 91bp 9109 chr4 158256997 158256997 1 + T G OV 158256998 + 158256978 158257018 41 GGATGCAGACACGAAAATTTGGAATGGGATGGTTGGAGAAC GGATGCAGACACGAAAATTGGGAATGGGATGGTTGGAGAAC < 41bp 0.88337436653585 0.66256276710673 NA NA prediction 0.44162319885824 Functional Loss - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158256998 chr4:158256997 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9647 0 0 1 0 1 GRIA2 chr4:158257029 5'GT 158257029 Upstream 33bp 9110 chr19 36036708 36036708 1 + T G SKCM 36036709 + 36036689 36036729 41 CTACTTCATCACCTACAAGTGCAGCGGCCTGTGAGTGCGGG CTACTTCATCACCTACAAGGGCAGCGGCCTGTGAGTGCGGG < 41bp 0.862290112908871 0.641502488566849 NA NA prediction 0.441575248684044 Functional Loss - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36036709 chr19:36036708 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9648 0 0 1 0 1 TMEM147 chr19:36036718 5'GT 36036718 Upstream 11bp 9111 chr17 58013617 58013617 1 + T G GBM 58013618 + 58013598 58013638 41 CTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAA CTCGTCTGGGAGCTGGTCCGGGGGACGCTGGAGAAGTTCAA < 41bp 0.892102591363748 0.671361765101335 NA NA prediction 0.441481652524825 Functional Loss - RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58013618 chr17:58013617 synonymous SNV . 0 20 hm7G_associated_SNPs_9650 0 0 1 0 2 RPS6KB1 chr17:58013576 3'AG 58013576 Downstream 42bp 9112 chr17 58013617 58013617 1 + T G GBM 58013618 + 58013598 58013638 41 CTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAA CTCGTCTGGGAGCTGGTCCGGGGGACGCTGGAGAAGTTCAA < 41bp 0.892102591363748 0.671361765101335 NA NA prediction 0.441481652524825 Functional Loss - RPS6KB1 ENSG00000108443 CDS Human protein_coding chr17:58013618 chr17:58013617 synonymous SNV . 0 20 hm7G_associated_SNPs_9650 0 0 1 0 2 RPS6KB1 chr17:58013638 5'GT 58013638 Upstream 22bp 9113 chr1 150967148 150967148 1 + T G UCEC 150967149 + 150967129 150967169 41 CTGAGTTCAGGAAGAAATTTGGGAAGTCCCTCTACTCTTCT CTGAGTTCAGGAAGAAATTGGGGAAGTCCCTCTACTCTTCT < 41bp 0.720707633789297 0.378532054052702 NA NA prediction 0.441415267578595 Functional Loss - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150967149 chr1:150967148 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9651 0 0 0 0 2 ANXA9 chr1:150967053 3'AG 150967053 Downstream 96bp 9114 chr1 150967148 150967148 1 + T G UCEC 150967149 + 150967129 150967169 41 CTGAGTTCAGGAAGAAATTTGGGAAGTCCCTCTACTCTTCT CTGAGTTCAGGAAGAAATTGGGGAAGTCCCTCTACTCTTCT < 41bp 0.720707633789297 0.378532054052702 NA NA prediction 0.441415267578595 Functional Loss - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150967149 chr1:150967148 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9651 0 0 0 0 2 ANXA9 chr1:150967175 5'GT 150967175 Upstream 28bp 9115 chr1 36786521 36786521 1 + A G rs200307550 36786522 + 36786502 36786542 41 GCCTCGGCCCGCAGGAGGAAGCTGACCGACATCTGGGAGGA GCCTCGGCCCGCAGGAGGAGGCTGACCGACATCTGGGAGGA < 41bp 0.720577256835082 0.49743815049457 NA NA prediction 0.441154513670164 Functional Loss - SH3D21 ENSG00000214193 CDS Human protein_coding chr1:36786522 chr1:36786521 nonsynonymous SNV 0.082 3 20 hm7G_associated_SNPs_9659 0 0 1 0 2 SH3D21 chr1:36786516 3'AG 36786516 Downstream 6bp 9116 chr1 36786521 36786521 1 + A G rs200307550 36786522 + 36786502 36786542 41 GCCTCGGCCCGCAGGAGGAAGCTGACCGACATCTGGGAGGA GCCTCGGCCCGCAGGAGGAGGCTGACCGACATCTGGGAGGA < 41bp 0.720577256835082 0.49743815049457 NA NA prediction 0.441154513670164 Functional Loss - SH3D21 ENSG00000214193 CDS Human protein_coding chr1:36786522 chr1:36786521 nonsynonymous SNV 0.082 3 20 hm7G_associated_SNPs_9659 0 0 1 0 2 SH3D21 chr1:36786579 5'GT 36786579 Upstream 59bp 9117 chrX 130217753 130217753 1 + T G HNSC 130217754 + 130217734 130217774 41 AGCCTGGAAGAGGTCCTGGTGAACGAGTTTACCCGCCGCAA AGCCTGGAAGAGGTCCTGGGGAACGAGTTTACCCGCCGCAA < 41bp 0.903908254008954 0.683399085557856 NA NA prediction 0.441018336902195 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130217754 chrX:130217753 nonsynonymous SNV 0.451 2 20 hm7G_associated_SNPs_9660 0 0 0 0 1 ARHGAP36 chrX:130217708 3'AG 130217708 Downstream 46bp 9118 chr2 98341664 98341664 1 + A G rs199631517 98341665 + 98341645 98341685 41 CACAGCAGCCTGACGCGTGAGGAGGCCGAGCGCAAACTTTA CACAGCAGCCTGACGCGTGGGGAGGCCGAGCGCAAACTTTA < 41bp 0.73393314702874 0.513463597036579 NA NA prediction 0.440939099984323 Functional Loss - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98341665 chr2:98341664 nonsynonymous SNV 0.961 1 20 hm7G_associated_SNPs_9661 0 0 0 0 1 ZAP70 chr2:98341715 5'GT 98341715 Upstream 52bp 9119 chr2 102626094 102626094 1 + A G LUSC 102626095 + 102626075 102626115 41 GGCTGGAAGGGGAGCCTGTAGCCCTGAGGTGCCCCCAGGTG GGCTGGAAGGGGAGCCTGTGGCCCTGAGGTGCCCCCAGGTG < 41bp 0.763331665156452 0.543008542001004 NA NA prediction 0.440646246310896 Functional Loss - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102626095 chr2:102626094 synonymous SNV . 0 20 hm7G_associated_SNPs_9662 0 0 0 0 1 IL1R2 chr2:102626024 3'AG 102626024 Downstream 71bp 9120 chr1 150235229 150235229 1 + T G ESCA 150235230 + 150235210 150235250 41 AGACTAAGAATATAGCTTATGAACACATTCTGAGTCACTTG AGACTAAGAATATAGCTTAGGAACACATTCTGAGTCACTTG < 41bp 0.890773308559834 0.670578965142009 NA NA prediction 0.440388686835651 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150235230 chr1:150235229 stopgain 0.979 1 20 hm7G_associated_SNPs_9666 0 0 0 0 2 CA14 chr1:150235203 3'AG 150235203 Downstream 27bp 9121 chr1 150235229 150235229 1 + T G ESCA 150235230 + 150235210 150235250 41 AGACTAAGAATATAGCTTATGAACACATTCTGAGTCACTTG AGACTAAGAATATAGCTTAGGAACACATTCTGAGTCACTTG < 41bp 0.890773308559834 0.670578965142009 NA NA prediction 0.440388686835651 Functional Loss - CA14 ENSG00000118298 CDS Human protein_coding chr1:150235230 chr1:150235229 stopgain 0.979 1 20 hm7G_associated_SNPs_9666 0 0 0 0 2 CA14 chr1:150235269 5'GT 150235269 Upstream 41bp 9122 chr9 139753547 139753547 1 + A G LUSC 139753548 + 139753528 139753568 41 CGGCGGCACCAGTGGCTGGAGGCCCAGGTGGAGGTAGCCAG CGGCGGCACCAGTGGCTGGGGGCCCAGGTGGAGGTAGCCAG < 41bp 0.75087620220405 0.530707314483528 NA NA prediction 0.440337775441044 Functional Loss - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139753548 chr9:139753547 nonsynonymous SNV 0.308 3 20 hm7G_associated_SNPs_9668 0 0 1 0 2 MAMDC4 chr9:139753457 3'AG 139753457 Downstream 91bp 9123 chr9 139753547 139753547 1 + A G LUSC 139753548 + 139753528 139753568 41 CGGCGGCACCAGTGGCTGGAGGCCCAGGTGGAGGTAGCCAG CGGCGGCACCAGTGGCTGGGGGCCCAGGTGGAGGTAGCCAG < 41bp 0.75087620220405 0.530707314483528 NA NA prediction 0.440337775441044 Functional Loss - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139753548 chr9:139753547 nonsynonymous SNV 0.308 3 20 hm7G_associated_SNPs_9668 0 0 1 0 2 MAMDC4 chr9:139753584 5'GT 139753584 Upstream 38bp 9124 chr20 61951452 61951452 1 + A G UCEC 61951453 + 61951433 61951473 41 GACTGCCGGAAGGTGGCTGAGCGGCCCCTTGGGGAGATGGG GACTGCCGGAAGGTGGCTGGGCGGCCCCTTGGGGAGATGGG < 41bp 0.723616852764381 0.503468917075302 NA NA prediction 0.440295871378158 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61951453 chr20:61951452 nonsynonymous SNV 0.693 3 20 hm7G_associated_SNPs_9670 0 0 0 0 2 COL20A1 chr20:61951391 3'AG 61951391 Downstream 62bp 9125 chr20 61951452 61951452 1 + A G UCEC 61951453 + 61951433 61951473 41 GACTGCCGGAAGGTGGCTGAGCGGCCCCTTGGGGAGATGGG GACTGCCGGAAGGTGGCTGGGCGGCCCCTTGGGGAGATGGG < 41bp 0.723616852764381 0.503468917075302 NA NA prediction 0.440295871378158 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61951453 chr20:61951452 nonsynonymous SNV 0.693 3 20 hm7G_associated_SNPs_9670 0 0 0 0 2 COL20A1 chr20:61951549 5'GT 61951549 Upstream 98bp 9126 chrX 15706889 15706889 1 + T G rs186512616 15706890 + 15706870 15706910 41 GATCCCGGCTTAAAACCACTGACCATCTCTTATGACCCAGC GATCCCGGCTTAAAACCACGGACCATCTCTTATGACCCAGC < 41bp 0.780685252605678 0.560599699197617 NA NA prediction 0.440171106816123 Functional Loss - CA5BP1 ENSG00000186312 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:15706890 chrX:15706889 . . 0 20 hm7G_associated_SNPs_9671 0 0 0 0 1 CA5BP1 chrX:15706981 5'GT 15706981 Upstream 93bp 9127 chr17 4857073 4857073 1 + A G COAD 4857074 + 4857054 4857094 41 AAGGCGGGAGCAGCTGAGAAGGGGGTCCCCCTGTACCGCCA AAGGCGGGAGCAGCTGAGAGGGGGGTCCCCCTGTACCGCCA < 41bp 0.720022498975858 0.493608471928488 NA NA prediction 0.440044997951717 Functional Loss - ENO3 ENSG00000108515 CDS Human protein_coding chr17:4857074 chr17:4857073 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_9673 0 0 1 0 1 ENO3 chr17:4857140 5'GT 4857140 Upstream 68bp 9128 chr6 3127638 3127638 1 + T G UCEC 3127639 + 3127619 3127659 41 AAAGATGCTGTTGATTTGATGAAGGTAGGTCTCTGAGGGAA AAAGATGCTGTTGATTTGAGGAAGGTAGGTCTCTGAGGGAA < 41bp 0.888707909164259 0.668689683861735 NA NA prediction 0.44003645060505 Functional Loss - BPHL ENSG00000137274 CDS Human protein_coding chr6:3127639 chr6:3127638 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_9674 0 0 0 1 1 BPHL chr6:3127642 5'GT 3127642 Upstream 5bp 9129 chr11 76832982 76832982 1 + A G UCEC 76832983 + 76832963 76833003 41 CTGCCGCCCCATATCAGGGAGCTGCGCCTGGATGAGCCCCC CTGCCGCCCCATATCAGGGGGCTGCGCCTGGATGAGCCCCC < 41bp 0.726865141571296 0.506862684440563 NA NA prediction 0.440004914261468 Functional Loss - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76832983 chr11:76832982 nonsynonymous SNV 0.634 4 20 hm7G_associated_SNPs_9675 0 0 0 0 1 CAPN5 chr11:76832980 3'AG 76832980 Downstream 3bp 9130 chr2 219677680 219677680 1 + T G UCEC 219677681 + 219677661 219677701 41 GATGAGAAGCTCGAAGATATGGAGGCCCAACTGCAGGCAGC GATGAGAAGCTCGAAGATAGGGAGGCCCAACTGCAGGCAGC < 41bp 0.900224724395726 0.680260513543471 NA NA prediction 0.43992842170451 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677681 chr2:219677680 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_9677 0 0 1 0 1 CYP27A1 chr2:219677647 3'AG 219677647 Downstream 34bp 9131 chrX 47045017 47045017 1 + A G LUAD 47045018 + 47044998 47045038 41 TCCGGCACCAGCAGCTCTCAGGGCTCCACAAGGTAACAGCG TCCGGCACCAGCAGCTCTCGGGGCTCCACAAGGTAACAGCG < 41bp 0.724634334341391 0.504736801666512 NA NA prediction 0.439795065349759 Functional Loss - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47045018 chrX:47045017 synonymous SNV . 0 20 hm7G_associated_SNPs_9679 0 0 1 0 1 RBM10 chrX:47045029 5'GT 47045029 Upstream 13bp 9132 chr4 25664188 25664188 1 + A G BLCA 25664189 + 25664169 25664209 41 AGTACCTCGAAGGGGCCGCAGGTCAGCAGCCCACTGCCCCT AGTACCTCGAAGGGGCCGCGGGTCAGCAGCCCACTGCCCCT < 41bp 0.719860939126201 0.498545850042992 NA NA prediction 0.439721878252401 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25664189 chr4:25664188 synonymous SNV . 0 20 hm7G_associated_SNPs_9682 0 0 0 0 2 SLC34A2 chr4:25664120 3'AG 25664120 Downstream 69bp 9133 chr4 25664188 25664188 1 + A G BLCA 25664189 + 25664169 25664209 41 AGTACCTCGAAGGGGCCGCAGGTCAGCAGCCCACTGCCCCT AGTACCTCGAAGGGGCCGCGGGTCAGCAGCCCACTGCCCCT < 41bp 0.719860939126201 0.498545850042992 NA NA prediction 0.439721878252401 Functional Loss - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25664189 chr4:25664188 synonymous SNV . 0 20 hm7G_associated_SNPs_9682 0 0 0 0 2 SLC34A2 chr4:25664234 5'GT 25664234 Upstream 47bp 9134 chr12 122255501 122255501 1 + A G rs149930821 122255502 + 122255482 122255522 41 TCCTCGGCCTCCGACAAGGAGGAGGAACAGGAGAGCACCGA TCCTCGGCCTCCGACAAGGGGGAGGAACAGGAGAGCACCGA < 41bp 0.724218426257545 0.504520378997679 NA NA prediction 0.439396094519731 Functional Loss - SETD1B ENSG00000139718;ENSG00000139718 exonic;splicing Human protein_coding chr12:122255502 chr12:122255501 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_9684 0 0 0 0 1 SETD1B chr12:122255559 5'GT 122255559 Upstream 59bp 9135 chr7 39247166 39247166 1 + T G LUSC 39247167 + 39247147 39247187 41 ACCAACATCCAAGGGCTGGTGGCAGCAGCTGCAGCCGGAGG ACCAACATCCAAGGGCTGGGGGCAGCAGCTGCAGCCGGAGG < 41bp 0.719687593010062 0.386289531257388 NA NA prediction 0.439375186020124 Functional Loss - POU6F2 ENSG00000106536 CDS Human protein_coding chr7:39247167 chr7:39247166 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9685 0 0 0 0 1 POU6F2 chr7:39247219 5'GT 39247219 Upstream 54bp 9136 chr5 138266328 138266328 1 + T G LUAD 138266329 + 138266309 138266349 41 TGCATGATTATGATGGAGATGACAGACTTTACCCGGTGAGC TGCATGATTATGATGGAGAGGACAGACTTTACCCGGTGAGC < 41bp 0.719670574705502 0.381126572186124 NA NA prediction 0.439341149411003 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138266329 chr5:138266328 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_9686 0 0 1 0 1 CTNNA1 chr5:138266343 5'GT 138266343 Upstream 16bp 9137 chr1 151993775 151993775 1 + T G CESC 151993776 + 151993756 151993796 41 TCCTCACTCCGGATGAGCCTGACAACTCCCAGGGGCAGGAT TCCTCACTCCGGATGAGCCGGACAACTCCCAGGGGCAGGAT < 41bp 0.719611113554072 0.425733527107016 NA NA prediction 0.439222227108144 Functional Loss - NBPF18P ENSG00000229021;ENSG00000240667 ncRNA_exonic Human antisense chr1:151993776 chr1:151993775 . . 0 20 hm7G_associated_SNPs_9689 0 0 0 0 1 NBPF18P chr1:151993860 5'GT 151993860 Upstream 86bp 9138 chr17 27024072 27024072 1 + T G GBM 27024073 + 27024053 27024093 41 AAGGAAAATGCCTTCAGCCTGGGAGCCACTCTGTGGATCAA AAGGAAAATGCCTTCAGCCGGGGAGCCACTCTGTGGATCAA < 41bp 0.719559436156509 0.3740591904489 NA NA prediction 0.439118872313017 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27024073 chr17:27024072 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9690 0 0 1 0 1 SUPT6H chr17:27024100 5'GT 27024100 Upstream 29bp 9139 chr1 151372579 151372579 1 + T G LUSC 151372580 + 151372560 151372600 41 CGCAACATCTCTCGCATTATGCGAGTCAACAACAGTACCAT CGCAACATCTCTCGCATTAGGCGAGTCAACAACAGTACCAT < 41bp 0.900353413787182 0.680884518586717 NA NA prediction 0.43893779040093 Functional Loss - PSMB4 ENSG00000159377 CDS Human protein_coding chr1:151372580 chr1:151372579 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_9694 0 0 1 0 1 PSMB4 chr1:151372663 5'GT 151372663 Upstream 85bp 9140 chr1 224922315 224922315 1 + T G SKCM 224922316 + 224922296 224922336 41 CTAGCCTACGACCCACCGGTGGTCATGAATGCCGACACTTT CTAGCCTACGACCCACCGGGGGTCATGAATGCCGACACTTT < 41bp 0.901823375003333 0.682388400882232 NA NA prediction 0.438869948242202 Functional Loss - CNIH3 ENSG00000143786 CDS Human protein_coding chr1:224922316 chr1:224922315 nonsynonymous SNV 0.441 1 20 hm7G_associated_SNPs_9696 0 0 0 0 2 CNIH3 chr1:224922265 3'AG 224922265 Downstream 51bp 9141 chr1 224922315 224922315 1 + T G SKCM 224922316 + 224922296 224922336 41 CTAGCCTACGACCCACCGGTGGTCATGAATGCCGACACTTT CTAGCCTACGACCCACCGGGGGTCATGAATGCCGACACTTT < 41bp 0.901823375003333 0.682388400882232 NA NA prediction 0.438869948242202 Functional Loss - CNIH3 ENSG00000143786 CDS Human protein_coding chr1:224922316 chr1:224922315 nonsynonymous SNV 0.441 1 20 hm7G_associated_SNPs_9696 0 0 0 0 2 CNIH3 chr1:224922408 5'GT 224922408 Upstream 94bp 9142 chr5 176306317 176306317 1 + A G STAD 176306318 + 176306298 176306338 41 CTCCCACCTCCAGGACACAAGGTTTGCTGAGCTGCTGGCTC CTCCCACCTCCAGGACACAGGGTTTGCTGAGCTGCTGGCTC < 41bp 0.719427337343211 0.498565515938685 NA NA prediction 0.438854674686421 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176306318 chr5:176306317 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_9697 0 0 0 0 1 UNC5A chr5:176306311 3'AG 176306311 Downstream 7bp 9143 chrX 69496058 69496058 1 + A G STAD 69496059 + 69496039 69496079 41 GCTGAATCCAGCAGCCCTCAGGGGCCCCTCACAGTCCTACA GCTGAATCCAGCAGCCCTCGGGGGCCCCTCACAGTCCTACA < 41bp 0.729583541737991 0.510168267439224 NA NA prediction 0.438830548597534 Functional Loss - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69496059 chrX:69496058 nonsynonymous SNV 0.446 0 20 hm7G_associated_SNPs_9698 0 0 0 0 1 ARR3 chrX:69496131 5'GT 69496131 Upstream 74bp 9144 chr12 6619925 6619925 1 + T G SKCM 6619926 + 6619906 6619946 41 TACGTCTCCTGGAATCCTTTGAGACCATGGCCAGCCAGACA TACGTCTCCTGGAATCCTTGGAGACCATGGCCAGCCAGACA < 41bp 0.719335668703353 0.37040348158523 NA NA prediction 0.438671337406705 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6619926 chr12:6619925 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9699 0 0 1 0 1 NCAPD2 chr12:6619976 5'GT 6619976 Upstream 52bp 9145 chr11 66254042 66254042 1 + A G rs145950613 66254043 + 66254023 66254063 41 CGGGTGATCCTAGGGAGTGAGGCTGCTCAGCAGCACCCAGA CGGGTGATCCTAGGGAGTGGGGCTGCTCAGCAGCACCCAGA < 41bp 0.737371768613477 0.518046048924072 NA NA prediction 0.438651439378809 Functional Loss - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66254043 chr11:66254042 nonsynonymous SNV 0.927 0 20 hm7G_associated_SNPs_9700 0 0 1 0 1 DPP3 chr11:66254011 3'AG 66254011 Downstream 32bp 9146 chr10 88419719 88419719 1 + A G COAD 88419720 + 88419700 88419740 41 GCAGCGGCAGCGGCTGCAGAGCGAGTGCAAGATGGCCAAGA GCAGCGGCAGCGGCTGCAGGGCGAGTGCAAGATGGCCAAGA < 41bp 0.761489852184088 0.542184753348585 NA NA prediction 0.438610197671006 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419720 chr10:88419719 nonsynonymous SNV 0.850 1 20 hm7G_associated_SNPs_9701 0 0 0 0 2 OPN4 chr10:88419652 3'AG 88419652 Downstream 68bp 9147 chr10 88419719 88419719 1 + A G COAD 88419720 + 88419700 88419740 41 GCAGCGGCAGCGGCTGCAGAGCGAGTGCAAGATGGCCAAGA GCAGCGGCAGCGGCTGCAGGGCGAGTGCAAGATGGCCAAGA < 41bp 0.761489852184088 0.542184753348585 NA NA prediction 0.438610197671006 Functional Loss - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419720 chr10:88419719 nonsynonymous SNV 0.850 1 20 hm7G_associated_SNPs_9701 0 0 0 0 2 OPN4 chr10:88419816 5'GT 88419816 Upstream 98bp 9148 chr19 17653014 17653014 1 + A G GBM 17653015 + 17652995 17653035 41 CTACCGTGAGGCCGAGCGGAGCCGGGGGCGCTTGGGGCAGC CTACCGTGAGGCCGAGCGGGGCCGGGGGCGCTTGGGGCAGC < 41bp 0.731702658627931 0.512445643490304 NA NA prediction 0.438514030275254 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17653015 chr19:17653014 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_9704 0 0 0 0 2 FAM129C chr19:17652945 3'AG 17652945 Downstream 70bp 9149 chr19 17653014 17653014 1 + A G GBM 17653015 + 17652995 17653035 41 CTACCGTGAGGCCGAGCGGAGCCGGGGGCGCTTGGGGCAGC CTACCGTGAGGCCGAGCGGGGCCGGGGGCGCTTGGGGCAGC < 41bp 0.731702658627931 0.512445643490304 NA NA prediction 0.438514030275254 Functional Loss - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17653015 chr19:17653014 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_9704 0 0 0 0 2 FAM129C chr19:17653103 5'GT 17653103 Upstream 90bp 9150 chr9 82323671 82323671 1 + T C STAD 82323672 + 82323652 82323692 41 CAGCTGCTGCCGCCGCCGCTGCTGCTGCTGCCTATGGGAGA CAGCTGCTGCCGCCGCCGCCGCTGCTGCTGCCTATGGGAGA < 41bp 0.72320945037356 0.503962718713115 NA NA prediction 0.43849346332089 Functional Loss - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323672 chr9:82323671 synonymous SNV . 0 20 hm7G_associated_SNPs_9706 0 0 0 0 1 TLE4 chr9:82323701 5'GT 82323701 Upstream 31bp 9151 chr3 10864996 10864996 1 + T G ESCA 10864997 + 10864977 10865017 41 TCCACTGTAGAGAATTGTGTGGAGTTCCAGAAACTGAATGT TCCACTGTAGAGAATTGTGGGGAGTTCCAGAAACTGAATGT < 41bp 0.880522581300363 0.661313315662657 NA NA prediction 0.438418531275412 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10864997 chr3:10864996 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9708 0 0 1 0 2 SLC6A11 chr3:10864987 3'AG 10864987 Downstream 10bp 9152 chr3 10864996 10864996 1 + T G ESCA 10864997 + 10864977 10865017 41 TCCACTGTAGAGAATTGTGTGGAGTTCCAGAAACTGAATGT TCCACTGTAGAGAATTGTGGGGAGTTCCAGAAACTGAATGT < 41bp 0.880522581300363 0.661313315662657 NA NA prediction 0.438418531275412 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10864997 chr3:10864996 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9708 0 0 1 0 2 SLC6A11 chr3:10865077 5'GT 10865077 Upstream 82bp 9153 chr1 161138831 161138831 1 + A G LIHC 161138832 + 161138812 161138852 41 ATTCGCCAGGCCTTGGCTGAGCGCTGGAGCCAGTGGTCACT ATTCGCCAGGCCTTGGCTGGGCGCTGGAGCCAGTGGTCACT < 41bp 0.736074809955615 0.517035698287187 NA NA prediction 0.438078223336856 Functional Loss - PPOX ENSG00000143224 CDS Human protein_coding chr1:161138832 chr1:161138831 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_9711 0 0 1 1 1 PPOX chr1:161138783 3'AG 161138783 Downstream 49bp 9154 chr8 99045826 99045826 1 + T G LGG 99045827 + 99045807 99045847 41 AACACGATCAATGCAAATGTGAAAACCTTATAATGTTCCAG AACACGATCAATGCAAATGGGAAAACCTTATAATGTTCCAG < 41bp 0.718966330495421 0.385482284966137 NA NA prediction 0.437932660990843 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99045827 chr8:99045826 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9712 0 0 0 0 1 MATN2 chr8:99045789 3'AG 99045789 Downstream 38bp 9155 chr10 101124187 101124187 1 + T G ACC 101124188 + 101124168 101124208 41 TTCCAGGGTAAAGTGGAGGTGGAGGTTGGTAAGGAAGGCCT TTCCAGGGTAAAGTGGAGGGGGAGGTTGGTAAGGAAGGCCT < 41bp 0.897187634932976 0.678251208367104 NA NA prediction 0.437872853131744 Functional Loss - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101124188 chr10:101124187 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_9715 0 0 0 0 1 CNNM1 chr10:101124273 5'GT 101124273 Upstream 87bp 9156 chr16 31388355 31388355 1 + A G rs201039279 31388356 + 31388336 31388376 41 ACCTTTGACGTCTCCCCCAAGGCTGTCCTGGGAGACCGGCT ACCTTTGACGTCTCCCCCAGGGCTGTCCTGGGAGACCGGCT < 41bp 0.729579064682741 0.510652703698391 NA NA prediction 0.4378527219687 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31388356 chr16:31388355 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_9717 0 0 0 0 2 ITGAX chr16:31388321 3'AG 31388321 Downstream 35bp 9157 chr16 31388355 31388355 1 + A G rs201039279 31388356 + 31388336 31388376 41 ACCTTTGACGTCTCCCCCAAGGCTGTCCTGGGAGACCGGCT ACCTTTGACGTCTCCCCCAGGGCTGTCCTGGGAGACCGGCT < 41bp 0.729579064682741 0.510652703698391 NA NA prediction 0.4378527219687 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31388356 chr16:31388355 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_9717 0 0 0 0 2 ITGAX chr16:31388400 5'GT 31388400 Upstream 46bp 9158 chr22 31495088 31495088 1 + A G UCEC 31495089 + 31495069 31495109 41 AGCCGTGCAGCGATCCACCAGCTTCGGGGTCCCCAACGCCA AGCCGTGCAGCGATCCACCGGCTTCGGGGTCCCCAACGCCA < 41bp 0.718867274239628 0.494585799058388 NA NA prediction 0.437734548479257 Functional Loss - SMTN ENSG00000183963 CDS Human protein_coding chr22:31495089 chr22:31495088 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_9719 0 0 1 0 2 SMTN chr22:31495048 3'AG 31495048 Downstream 41bp 9159 chr22 31495088 31495088 1 + A G UCEC 31495089 + 31495069 31495109 41 AGCCGTGCAGCGATCCACCAGCTTCGGGGTCCCCAACGCCA AGCCGTGCAGCGATCCACCGGCTTCGGGGTCCCCAACGCCA < 41bp 0.718867274239628 0.494585799058388 NA NA prediction 0.437734548479257 Functional Loss - SMTN ENSG00000183963 CDS Human protein_coding chr22:31495089 chr22:31495088 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_9719 0 0 1 0 2 SMTN chr22:31495165 5'GT 31495165 Upstream 78bp 9160 chr19 1084344 1084344 1 + A G KICH 1084345 + 1084325 1084365 41 CGGCGGCGGACGGGTGCAGAGGTGAGTGTGTGGCTGCCCGA CGGCGGCGGACGGGTGCAGGGGTGAGTGTGTGGCTGCCCGA < 41bp 0.718748339323382 0.495725315556858 NA NA prediction 0.437496678646763 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1084345 chr19:1084344 synonymous SNV . 0 20 hm7G_associated_SNPs_9722 0 0 0 0 1 ARHGAP45 chr19:1084345 5'GT 1084345 Upstream 2bp 9161 chr13 31835093 31835093 1 + T G THCA 31835094 + 31835074 31835114 41 ATTTAACAGGAATGGTTTTTGGGAAAAGCATTACATGATGA ATTTAACAGGAATGGTTTTGGGGAAAAGCATTACATGATGA < 41bp 0.718676039436134 0.40287386152233 NA NA prediction 0.437352078872269 Functional Loss - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31835094 chr13:31835093 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9724 0 0 0 1 1 B3GLCT chr13:31835083 3'AG 31835083 Downstream 11bp 9162 chr2 183951788 183951788 1 + T G SKCM 183951789 + 183951769 183951809 41 TGACTCATATTCTTAATGTTGCATATGGAGTTGAAAATGCT TGACTCATATTCTTAATGTGGCATATGGAGTTGAAAATGCT < 41bp 0.878744621240148 0.660069703686888 NA NA prediction 0.43734983510652 Functional Loss - DUSP19 ENSG00000162999 CDS Human protein_coding chr2:183951789 chr2:183951788 synonymous SNV . 0 20 hm7G_associated_SNPs_9725 0 0 0 0 1 DUSP19 chr2:183951768 3'AG 183951768 Downstream 21bp 9163 chr1 65137352 65137352 1 + T G UCEC 65137353 + 65137333 65137373 41 TACCTGTCTGTAACCAAGATGGTGGCAACAAAATAAGGTAA TACCTGTCTGTAACCAAGAGGGTGGCAACAAAATAAGGTAA < 41bp 0.718633883308531 0.38389926591173 NA NA prediction 0.437267766617062 Functional Loss - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65137353 chr1:65137352 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_9727 0 0 1 0 1 CACHD1 chr1:65137369 5'GT 65137369 Upstream 18bp 9164 chr17 57808831 57808831 1 + T G SKCM 57808832 + 57808812 57808852 41 CAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATG CAGAGAATGGAAAAAATTGGGACCAGAGACGTGTAGCAATG < 41bp 0.89260685194488 0.674041957507596 NA NA prediction 0.437129788874569 Functional Loss - VMP1 ENSG00000062716 CDS Human protein_coding chr17:57808832 chr17:57808831 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9728 0 0 1 0 2 VMP1 chr17:57808782 3'AG 57808782 Downstream 50bp 9165 chr17 57808831 57808831 1 + T G SKCM 57808832 + 57808812 57808852 41 CAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATG CAGAGAATGGAAAAAATTGGGACCAGAGACGTGTAGCAATG < 41bp 0.89260685194488 0.674041957507596 NA NA prediction 0.437129788874569 Functional Loss - VMP1 ENSG00000062716 CDS Human protein_coding chr17:57808832 chr17:57808831 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9728 0 0 1 0 2 VMP1 chr17:57808883 5'GT 57808883 Upstream 53bp 9166 chr11 64116852 64116852 1 + A G rs559711154 64116853 + 64116833 64116873 41 GAGTTGGGGGACCGGCTGGAGCATTTGCAGCGTGAGCTGGA GAGTTGGGGGACCGGCTGGGGCATTTGCAGCGTGAGCTGGA < 41bp 0.718558000704637 0.498782089122686 NA NA prediction 0.437116001409275 Functional Loss - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64116853 chr11:64116852 nonsynonymous SNV 0.901 3 20 hm7G_associated_SNPs_9729 0 0 1 0 2 CCDC88B chr11:64116803 3'AG 64116803 Downstream 50bp 9167 chr11 64116852 64116852 1 + A G rs559711154 64116853 + 64116833 64116873 41 GAGTTGGGGGACCGGCTGGAGCATTTGCAGCGTGAGCTGGA GAGTTGGGGGACCGGCTGGGGCATTTGCAGCGTGAGCTGGA < 41bp 0.718558000704637 0.498782089122686 NA NA prediction 0.437116001409275 Functional Loss - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64116853 chr11:64116852 nonsynonymous SNV 0.901 3 20 hm7G_associated_SNPs_9729 0 0 1 0 2 CCDC88B chr11:64116930 5'GT 64116930 Upstream 79bp 9168 chr16 67679454 67679454 1 + A G COAD 67679455 + 67679435 67679475 41 TTCCACAGGCGAGATCACCAGGTTCCTGTGGCCCAAAGAGG TTCCACAGGCGAGATCACCGGGTTCCTGTGGCCCAAAGAGG < 41bp 0.732333920665847 0.513834508381491 NA NA prediction 0.436998824568711 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67679455 chr16:67679454 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_9731 0 0 0 0 2 CARMIL2 chr16:67679443 3'AG 67679443 Downstream 12bp 9169 chr16 67679454 67679454 1 + A G COAD 67679455 + 67679435 67679475 41 TTCCACAGGCGAGATCACCAGGTTCCTGTGGCCCAAAGAGG TTCCACAGGCGAGATCACCGGGTTCCTGTGGCCCAAAGAGG < 41bp 0.732333920665847 0.513834508381491 NA NA prediction 0.436998824568711 Functional Loss - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67679455 chr16:67679454 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_9731 0 0 0 0 2 CARMIL2 chr16:67679534 5'GT 67679534 Upstream 81bp 9170 chr7 43635706 43635706 1 + T G STAD 43635707 + 43635687 43635727 41 TCAGAAATGATCTTAGTTCTGGAATAGTAAGTATTGTCTTT TCAGAAATGATCTTAGTTCGGGAATAGTAAGTATTGTCTTT < 41bp 0.880387870850574 0.661930807560807 NA NA prediction 0.436914126579534 Functional Loss - STK17A ENSG00000164543 CDS Human protein_coding chr7:43635707 chr7:43635706 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9733 0 0 1 0 1 STK17A chr7:43635712 5'GT 43635712 Upstream 7bp 9171 chr9 104307082 104307082 1 + T C UCEC 104307083 + 104307063 104307103 41 GAGGAAGCAGTGCAGGAGCTGAACTCTTTCCTCGCACAGGA GAGGAAGCAGTGCAGGAGCCGAACTCTTTCCTCGCACAGGA < 41bp 0.723719990082438 0.505300891438122 NA NA prediction 0.436838197288632 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307083 chr9:104307082 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9734 0 0 1 0 2 RNF20 chr9:104307049 3'AG 104307049 Downstream 34bp 9172 chr9 104307082 104307082 1 + T C UCEC 104307083 + 104307063 104307103 41 GAGGAAGCAGTGCAGGAGCTGAACTCTTTCCTCGCACAGGA GAGGAAGCAGTGCAGGAGCCGAACTCTTTCCTCGCACAGGA < 41bp 0.723719990082438 0.505300891438122 NA NA prediction 0.436838197288632 Functional Loss - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307083 chr9:104307082 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9734 0 0 1 0 2 RNF20 chr9:104307167 5'GT 104307167 Upstream 86bp 9173 chr17 44949945 44949945 1 + A G rs118185468 44949946 + 44949926 44949966 41 ACTGCGGCAGCCCCGGCACAGGGCGGGGCCCACCTGAAGCA ACTGCGGCAGCCCCGGCACGGGGCGGGGCCCACCTGAAGCA < 41bp 0.759946775526701 0.541555508162367 NA NA prediction 0.436782534728669 Functional Loss - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44949946 chr17:44949945 nonsynonymous SNV 0.039 0 20 hm7G_associated_SNPs_9735 0 0 0 0 1 WNT9B chr17:44949883 3'AG 44949883 Downstream 63bp 9174 chr12 8998761 8998761 1 + T C SKCM 8998762 + 8998742 8998782 41 TCTATGCCATTTTTCCCAGTGGAGGTGTTGTAGCTGACAAA TCTATGCCATTTTTCCCAGCGGAGGTGTTGTAGCTGACAAA < 41bp 0.721362220109243 0.503008298872095 NA NA prediction 0.436707842474296 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8998762 chr12:8998761 synonymous SNV . 0 20 hm7G_associated_SNPs_9736 0 0 0 0 2 A2ML1 chr12:8998673 3'AG 8998673 Downstream 89bp 9175 chr12 8998761 8998761 1 + T C SKCM 8998762 + 8998742 8998782 41 TCTATGCCATTTTTCCCAGTGGAGGTGTTGTAGCTGACAAA TCTATGCCATTTTTCCCAGCGGAGGTGTTGTAGCTGACAAA < 41bp 0.721362220109243 0.503008298872095 NA NA prediction 0.436707842474296 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8998762 chr12:8998761 synonymous SNV . 0 20 hm7G_associated_SNPs_9736 0 0 0 0 2 A2ML1 chr12:8998818 5'GT 8998818 Upstream 58bp 9176 chr2 69204834 69204834 1 + T G LUAD 69204835 + 69204815 69204855 41 AGTCAGTGAGTGTCAACAATGAACACAATGTGGCCAATGTT AGTCAGTGAGTGTCAACAAGGAACACAATGTGGCCAATGTT < 41bp 0.88769502038256 0.669402869754596 NA NA prediction 0.436584301255929 Functional Loss - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69204835 chr2:69204834 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_9738 0 0 0 0 2 GKN1 chr2:69204769 3'AG 69204769 Downstream 66bp 9177 chr2 69204834 69204834 1 + T G LUAD 69204835 + 69204815 69204855 41 AGTCAGTGAGTGTCAACAATGAACACAATGTGGCCAATGTT AGTCAGTGAGTGTCAACAAGGAACACAATGTGGCCAATGTT < 41bp 0.88769502038256 0.669402869754596 NA NA prediction 0.436584301255929 Functional Loss - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69204835 chr2:69204834 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_9738 0 0 0 0 2 GKN1 chr2:69204906 5'GT 69204906 Upstream 73bp 9178 chr17 27064862 27064862 1 + A G UCEC 27064863 + 27064843 27064883 41 CCCGGGGACCTGTGAGGCCAGCCATCCCACCACCACTGTCG CCCGGGGACCTGTGAGGCCGGCCATCCCACCACCACTGTCG < 41bp 0.718279945720157 0.479005734030941 NA NA prediction 0.436559891440313 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064863 chr17:27064862 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_9739 0 0 1 0 1 NEK8 chr17:27064837 3'AG 27064837 Downstream 26bp 9179 chr8 144462009 144462009 1 + A G BLCA 144462010 + 144461990 144462030 41 CACCGGCAGGTGGCAGCCGAGTACAGGCTAGTGCACCGGAC CACCGGCAGGTGGCAGCCGGGTACAGGCTAGTGCACCGGAC < 41bp 0.718255740934197 0.493821350365578 NA NA prediction 0.436511481868394 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144462010 chr8:144462009 nonsynonymous SNV 0.342 1 20 hm7G_associated_SNPs_9740 0 0 0 0 1 RHPN1 chr8:144461999 3'AG 144461999 Downstream 11bp 9180 chr2 97359422 97359422 1 + T G rs61745438 97359423 + 97359403 97359443 41 GCTGTGGCAGCGTGACTTCTGGGTAAGTTGGGCTGGGCAGA GCTGTGGCAGCGTGACTTCGGGGTAAGTTGGGCTGGGCAGA < 41bp 0.71825100268369 0.407789751351721 NA NA prediction 0.43650200536738 Functional Loss - FER1L5 ENSG00000249715 ncRNA_exonic Human protein_coding chr2:97359423 chr2:97359422 . 0.009 0 20 hm7G_associated_SNPs_9741 0 0 0 0 1 FER1L5 chr2:97359424 5'GT 97359424 Upstream 3bp 9181 chr14 105355980 105355980 1 + A G SKCM 105355981 + 105355961 105356001 41 TCAGACCCCGAGGGCTGGCAGCTCCAGCCGGGCTCGTTCCC TCAGACCCCGAGGGCTGGCGGCTCCAGCCGGGCTCGTTCCC < 41bp 0.750551926651982 0.532321253368007 NA NA prediction 0.43646134656795 Functional Loss - CEP170B ENSG00000099814 CDS Human protein_coding chr14:105355981 chr14:105355980 nonsynonymous SNV 0.199 0 20 hm7G_associated_SNPs_9742 0 0 0 0 1 CEP170B chr14:105355957 3'AG 105355957 Downstream 24bp 9182 chr8 97614693 97614693 1 + T G STAD 97614694 + 97614674 97614714 41 CAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACC CAAAGATACTGTTGACTAGGGCTGCTCCAAAAGTGGAAACC < 41bp 0.902057295534612 0.683835529744177 NA NA prediction 0.436443531580871 Functional Loss - SDC2 ENSG00000169439 CDS Human protein_coding chr8:97614694 chr8:97614693 nonsynonymous SNV 0.830 2 20 hm7G_associated_SNPs_9743 0 0 1 0 2 SDC2 chr8:97614623 3'AG 97614623 Downstream 71bp 9183 chr8 97614693 97614693 1 + T G STAD 97614694 + 97614674 97614714 41 CAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACC CAAAGATACTGTTGACTAGGGCTGCTCCAAAAGTGGAAACC < 41bp 0.902057295534612 0.683835529744177 NA NA prediction 0.436443531580871 Functional Loss - SDC2 ENSG00000169439 CDS Human protein_coding chr8:97614694 chr8:97614693 nonsynonymous SNV 0.830 2 20 hm7G_associated_SNPs_9743 0 0 1 0 2 SDC2 chr8:97614756 5'GT 97614756 Upstream 64bp 9184 chr3 178947161 178947161 1 + T G UCEC 178947162 + 178947142 178947182 41 ATTCAGTGCAAAGGCGGCTTGAAAGGTGCACTGCAGTTCAA ATTCAGTGCAAAGGCGGCTGGAAAGGTGCACTGCAGTTCAA < 41bp 0.895124546758381 0.676925052342488 NA NA prediction 0.436398988831785 Functional Loss - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947162 chr3:178947161 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_9745 0 0 0 0 1 PIK3CA chr3:178947230 5'GT 178947230 Upstream 70bp 9185 chr16 29675084 29675084 1 + T G GBM 29675085 + 29675065 29675105 41 CTTCTCCTTGGGGTGCTGGTGGTAAGCCCAGACGCTCTGGG CTTCTCCTTGGGGTGCTGGGGGTAAGCCCAGACGCTCTGGG < 41bp 0.71816333033084 0.391794132183759 NA NA prediction 0.436326660661681 Functional Loss - SPN ENSG00000197471 CDS Human protein_coding chr16:29675085 chr16:29675084 nonsynonymous SNV 0.027 0 20 hm7G_associated_SNPs_9746 0 0 1 0 1 SPN chr16:29675016 3'AG 29675016 Downstream 69bp 9186 chr2 109411082 109411082 1 + T G STAD 109411083 + 109411063 109411103 41 TCCTTTGAAACCTGTCAGCTGTCCAAAATCTAAAGCATCAG TCCTTTGAAACCTGTCAGCGGTCCAAAATCTAAAGCATCAG < 41bp 0.718156099882234 0.395102537561473 NA NA prediction 0.436312199764469 Functional Loss - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109411083 chr2:109411082 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_9747 0 0 0 0 2 CCDC138 chr2:109410996 3'AG 109410996 Downstream 87bp 9187 chr2 109411082 109411082 1 + T G STAD 109411083 + 109411063 109411103 41 TCCTTTGAAACCTGTCAGCTGTCCAAAATCTAAAGCATCAG TCCTTTGAAACCTGTCAGCGGTCCAAAATCTAAAGCATCAG < 41bp 0.718156099882234 0.395102537561473 NA NA prediction 0.436312199764469 Functional Loss - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109411083 chr2:109411082 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_9747 0 0 0 0 2 CCDC138 chr2:109411177 5'GT 109411177 Upstream 96bp 9188 chr16 27763133 27763133 1 + T C UCEC 27763134 + 27763114 27763154 41 GAGATGTTTGACCTGGATGTGGGGAGCCTGGACAGCCTGCA GAGATGTTTGACCTGGATGCGGGGAGCCTGGACAGCCTGCA < 41bp 0.718112325851513 0.497700471162852 NA NA prediction 0.436224651703026 Functional Loss - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27763134 chr16:27763133 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_9748 0 0 1 0 1 KIAA0556 chr16:27763040 3'AG 27763040 Downstream 94bp 9189 chr4 152201080 152201080 1 + T G CESC 152201081 + 152201061 152201101 41 TCCCTCGTCAGTGAGAGGTTGATACTGACAGCAGCACACTG TCCCTCGTCAGTGAGAGGTGGATACTGACAGCAGCACACTG < 41bp 0.893628518503908 0.675537849230535 NA NA prediction 0.436181338546747 Functional Loss - PRSS48 ENSG00000189099 CDS Human protein_coding chr4:152201081 chr4:152201080 nonsynonymous SNV 0.027 0 20 hm7G_associated_SNPs_9749 0 0 0 0 1 PRSS48 chr4:152201110 5'GT 152201110 Upstream 31bp 9190 chr2 233322981 233322981 1 + A G LIHC 233322982 + 233322962 233323002 41 GCTTACCAGGCACTCACTGAGGCGGTCATGTTCGACGACGC GCTTACCAGGCACTCACTGGGGCGGTCATGTTCGACGACGC < 41bp 0.748162787784214 0.53015203986303 NA NA prediction 0.436021495842368 Functional Loss - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322982 chr2:233322981 nonsynonymous SNV 0.066 5 20 hm7G_associated_SNPs_9751 0 0 1 0 1 ALPI chr2:233322927 3'AG 233322927 Downstream 55bp 9191 chr19 49639045 49639045 1 + T G rs113630721 49639046 + 49639026 49639066 41 ATGCCCACAGGTCTCTCCCTGGCAGTGCCCTGGAGCTCCGT ATGCCCACAGGTCTCTCCCGGGCAGTGCCCTGGAGCTCCGT < 41bp 0.717992442497405 0.358804756255508 NA NA prediction 0.43598488499481 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49639046 chr19:49639045 synonymous SNV . 0 20 hm7G_associated_SNPs_9753 0 0 0 0 1 PPFIA3 chr19:49639036 3'AG 49639036 Downstream 10bp 9192 chr4 140291507 140291507 1 + T G ESCA 140291508 + 140291488 140291528 41 AGAAGAAGGATGATGATGATGAGGAGATAGGAGGTCCAAAA AGAAGAAGGATGATGATGAGGAGGAGATAGGAGGTCCAAAA < 41bp 0.88429041335382 0.666339759243101 NA NA prediction 0.435901308221438 Functional Loss - NAA15 ENSG00000164134 CDS Human protein_coding chr4:140291508 chr4:140291507 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_9755 0 0 1 0 1 NAA15 chr4:140291558 5'GT 140291558 Upstream 52bp 9193 chrX 148797289 148797289 1 + A G LUSC 148797290 + 148797270 148797310 41 AGAGAACAGGCCAACCTGGAGGACAGGAGTCCCAGGAGAAC AGAGAACAGGCCAACCTGGGGGACAGGAGTCCCAGGAGAAC < 41bp 0.724146783328143 0.506224969556806 NA NA prediction 0.435843627542675 Functional Loss - MAGEA11 ENSG00000185247 CDS Human protein_coding chrX:148797290 chrX:148797289 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_9757 0 0 0 0 1 MAGEA11 chrX:148797264 3'AG 148797264 Downstream 26bp 9194 chr1 2426982 2426982 1 + A G UCEC 2426983 + 2426963 2427003 41 GAGGAGGGAGATGAGGGTCAGGACTCCCCGGGAGGCCAGAG GAGGAGGGAGATGAGGGTCGGGACTCCCCGGGAGGCCAGAG < 41bp 0.758666662391762 0.54078626617883 NA NA prediction 0.435760792425864 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2426983 chr1:2426982 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_9758 0 0 0 0 1 PLCH2 chr1:2426927 3'AG 2426927 Downstream 56bp 9195 chr9 130548455 130548455 1 + T G LUAD 130548456 + 130548436 130548476 41 GCAGTACGACTCGGTGGAGTGCCCTTTTTGTGATGAAGTTT GCAGTACGACTCGGTGGAGGGCCCTTTTTGTGATGAAGTTT < 41bp 0.894832382499344 0.676963032979275 NA NA prediction 0.435738699040139 Functional Loss - CDK9 ENSG00000136807 CDS Human protein_coding chr9:130548456 chr9:130548455 nonsynonymous SNV 0.963 2 20 hm7G_associated_SNPs_9760 0 0 1 0 1 CDK9 chr9:130548519 5'GT 130548519 Upstream 65bp 9196 chrX 110406810 110406810 1 + T G STAD 110406811 + 110406791 110406831 41 TCTATACTCGTTCTGTGGTTGAATCCATTGCTTCACCAGCA TCTATACTCGTTCTGTGGTGGAATCCATTGCTTCACCAGCA < 41bp 0.717840495431516 0.388237126173134 NA NA prediction 0.435680990863031 Functional Loss - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110406811 chrX:110406810 synonymous SNV . 0 20 hm7G_associated_SNPs_9761 0 0 0 1 2 PAK3 chrX:110406771 3'AG 110406771 Downstream 40bp 9197 chrX 110406810 110406810 1 + T G STAD 110406811 + 110406791 110406831 41 TCTATACTCGTTCTGTGGTTGAATCCATTGCTTCACCAGCA TCTATACTCGTTCTGTGGTGGAATCCATTGCTTCACCAGCA < 41bp 0.717840495431516 0.388237126173134 NA NA prediction 0.435680990863031 Functional Loss - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110406811 chrX:110406810 synonymous SNV . 0 20 hm7G_associated_SNPs_9761 0 0 0 1 2 PAK3 chrX:110406790 3'AG 110406790 Downstream 21bp 9198 chr19 56487600 56487600 1 + T G SKCM 56487601 + 56487581 56487621 41 GACCTAAGTTTTAATAGCCTGAAGGATGATGGGGTGATCCT GACCTAAGTTTTAATAGCCGGAAGGATGATGGGGTGATCCT < 41bp 0.886270303866162 0.668478965230201 NA NA prediction 0.435582677271922 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56487601 chr19:56487600 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_9764 0 0 0 0 1 NLRP8 chr19:56487669 5'GT 56487669 Upstream 70bp 9199 chr5 43628422 43628422 1 + T G rs542033446 43628423 + 43628403 43628443 41 CCAAAGAGTTCATTGAAGCTGAAATGAAACTCTTTGCTCAA CCAAAGAGTTCATTGAAGCGGAAATGAAACTCTTTGCTCAA < 41bp 0.717771240541036 0.38058992953753 NA NA prediction 0.435542481082073 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43628423 chr5:43628422 synonymous SNV . 0 20 hm7G_associated_SNPs_9765 0 0 1 0 1 NNT chr5:43628489 5'GT 43628489 Upstream 68bp 9200 chr19 50542425 50542425 1 + T G HNSC 50542426 + 50542406 50542446 41 ACTGTGTTTCAGGAATTTGTGACCCTCAAGGATGTCGGCAT ACTGTGTTTCAGGAATTTGGGACCCTCAAGGATGTCGGCAT < 41bp 0.717766185256151 0.399713842196575 NA NA prediction 0.435532370512302 Functional Loss - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50542426 chr19:50542425 nonsynonymous SNV 0.969 1 20 hm7G_associated_SNPs_9767 0 0 0 0 1 ZNF473 chr19:50542418 3'AG 50542418 Downstream 8bp 9201 chr1 210761245 210761245 1 + T G STAD 210761246 + 210761226 210761266 41 CCTCTTCTTTCTCTAGGTATGTGTACATTCCAGTGGGCGGG CCTCTTCTTTCTCTAGGTAGGTGTACATTCCAGTGGGCGGG < 41bp 0.717712764640251 0.400003311595548 NA NA prediction 0.435425529280502 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210761246 chr1:210761245 stopgain 0.996 1 20 hm7G_associated_SNPs_9768 0 0 0 0 1 HHAT chr1:210761242 3'AG 210761242 Downstream 4bp 9202 chr20 47853046 47853046 1 + A G rs144893277 47853047 + 47853027 47853067 41 AGGCCAGGATACTTCCCCAAGGTGAGCAGGCACCCCTGTGG AGGCCAGGATACTTCCCCAGGGTGAGCAGGCACCCCTGTGG < 41bp 0.717809875008129 0.500097357774959 NA NA prediction 0.435425034466341 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47853047 chr20:47853046 synonymous SNV . 0 20 hm7G_associated_SNPs_9769 0 0 1 0 1 DDX27 chr20:47853047 5'GT 47853047 Upstream 2bp 9203 chr1 9782115 9782115 1 + A G LIHC 9782116 + 9782096 9782136 41 CCCAAGCCCCAGACCAAGGAGCTGATGCACTTGTGCATGCG CCCAAGCCCCAGACCAAGGGGCTGATGCACTTGTGCATGCG < 41bp 0.725685823944368 0.508098212190333 NA NA prediction 0.435175223508071 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9782116 chr1:9782115 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9772 0 0 1 0 2 PIK3CD chr1:9782033 3'AG 9782033 Downstream 83bp 9204 chr1 9782115 9782115 1 + A G LIHC 9782116 + 9782096 9782136 41 CCCAAGCCCCAGACCAAGGAGCTGATGCACTTGTGCATGCG CCCAAGCCCCAGACCAAGGGGCTGATGCACTTGTGCATGCG < 41bp 0.725685823944368 0.508098212190333 NA NA prediction 0.435175223508071 Functional Loss - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9782116 chr1:9782115 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9772 0 0 1 0 2 PIK3CD chr1:9782211 5'GT 9782211 Upstream 97bp 9205 chr19 56372911 56372911 1 + T G BRCA 56372912 + 56372892 56372932 41 GCTGTCGCCTTCAGAAGCTTGGGTGAGTTGAGAATCGACTT GCTGTCGCCTTCAGAAGCTGGGGTGAGTTGAGAATCGACTT < 41bp 0.717586416024403 0.392026034720282 NA NA prediction 0.435172832048806 Functional Loss - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56372912 chr19:56372911 synonymous SNV . 0 20 hm7G_associated_SNPs_9773 0 0 0 0 1 NLRP4 chr19:56372913 5'GT 56372913 Upstream 3bp 9206 chr19 50333817 50333817 1 + A G COAD 50333818 + 50333798 50333838 41 GCCGCGCAGAATGCAGTGGAGGCTGCCAAGAACCAGAAGGC GCCGCGCAGAATGCAGTGGGGGCTGCCAAGAACCAGAAGGC < 41bp 0.744822143497095 0.527260958900926 NA NA prediction 0.435122369192337 Functional Loss - MED25 ENSG00000104973 CDS Human protein_coding chr19:50333818 chr19:50333817 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_9775 0 0 1 0 2 MED25 chr19:50333768 3'AG 50333768 Downstream 50bp 9207 chr19 50333817 50333817 1 + A G COAD 50333818 + 50333798 50333838 41 GCCGCGCAGAATGCAGTGGAGGCTGCCAAGAACCAGAAGGC GCCGCGCAGAATGCAGTGGGGGCTGCCAAGAACCAGAAGGC < 41bp 0.744822143497095 0.527260958900926 NA NA prediction 0.435122369192337 Functional Loss - MED25 ENSG00000104973 CDS Human protein_coding chr19:50333818 chr19:50333817 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_9775 0 0 1 0 2 MED25 chr19:50333855 5'GT 50333855 Upstream 39bp 9208 chr4 111470552 111470552 1 + T G SKCM 111470553 + 111470533 111470573 41 CAGATTCTCTGGGATGGAATGATGCTGGAGACCATGTCACA CAGATTCTCTGGGATGGAAGGATGCTGGAGACCATGTCACA < 41bp 0.887489348306493 0.669953084487285 NA NA prediction 0.435072527638416 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111470553 chr4:111470552 nonsynonymous SNV 0.048 0 20 hm7G_associated_SNPs_9776 0 0 1 0 2 ENPEP chr4:111470502 3'AG 111470502 Downstream 51bp 9209 chr4 111470552 111470552 1 + T G SKCM 111470553 + 111470533 111470573 41 CAGATTCTCTGGGATGGAATGATGCTGGAGACCATGTCACA CAGATTCTCTGGGATGGAAGGATGCTGGAGACCATGTCACA < 41bp 0.887489348306493 0.669953084487285 NA NA prediction 0.435072527638416 Functional Loss - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111470553 chr4:111470552 nonsynonymous SNV 0.048 0 20 hm7G_associated_SNPs_9776 0 0 1 0 2 ENPEP chr4:111470575 5'GT 111470575 Upstream 24bp 9210 chr16 88922635 88922635 1 + A G rs3784877 88922636 + 88922616 88922656 41 TTCGCTCAGCATTCTCCAGAGGACAGAGACAGCCGTCAGGT TTCGCTCAGCATTCTCCAGGGGACAGAGACAGCCGTCAGGT < 41bp 0.736518072188334 0.518999512928659 NA NA prediction 0.435037118519351 Functional Loss - GALNS ENSG00000141012 CDS Human protein_coding chr16:88922636 chr16:88922635 synonymous SNV . 0 20 hm7G_associated_SNPs_9777 0 0 0 0 1 GALNS chr16:88922654 5'GT 88922654 Upstream 20bp 9211 chr19 57132734 57132734 1 + A G rs10405299 57132735 + 57132715 57132755 41 GGCCACGGGGGGACCCACGAGGAATGGTGCCAGGGGTCCTG GGCCACGGGGGGACCCACGGGGAATGGTGCCAGGGGTCCTG < 41bp 0.72770004177873 0.510198041213814 NA NA prediction 0.435004001129833 Functional Loss - ZNF71 ENSG00000197951 CDS Human protein_coding chr19:57132735 chr19:57132734 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_9778 0 0 1 0 1 ZNF71 chr19:57132636 3'AG 57132636 Downstream 99bp 9212 chr11 724768 724768 1 + T G STAD 724769 + 724749 724789 41 GCCAAGTACGTCAAGATCCTGTATGACTTCACAGCCCGAAA GCCAAGTACGTCAAGATCCGGTATGACTTCACAGCCCGAAA < 41bp 0.717471041244811 0.377523425996668 NA NA prediction 0.434942082489622 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:724769 chr11:724768 nonsynonymous SNV 0.277 0 20 hm7G_associated_SNPs_9780 0 0 1 0 2 EPS8L2 chr11:724724 3'AG 724724 Downstream 45bp 9213 chr11 724768 724768 1 + T G STAD 724769 + 724749 724789 41 GCCAAGTACGTCAAGATCCTGTATGACTTCACAGCCCGAAA GCCAAGTACGTCAAGATCCGGTATGACTTCACAGCCCGAAA < 41bp 0.717471041244811 0.377523425996668 NA NA prediction 0.434942082489622 Functional Loss - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:724769 chr11:724768 nonsynonymous SNV 0.277 0 20 hm7G_associated_SNPs_9780 0 0 1 0 2 EPS8L2 chr11:724829 5'GT 724829 Upstream 62bp 9214 chr8 145745678 145745678 1 + A G LIHC 145745679 + 145745659 145745699 41 TTGGATGATGGTGTGGAACAGGATCCTGGCACCATGAGCAT TTGGATGATGGTGTGGAACGGGATCCTGGCACCATGAGCAT < 41bp 0.719630968348302 0.502168698391352 NA NA prediction 0.434924539913902 Functional Loss - LRRC14 ENSG00000160959 CDS Human protein_coding chr8:145745679 chr8:145745678 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9781 0 0 1 0 1 LRRC14 chr8:145745622 3'AG 145745622 Downstream 57bp 9215 chr18 51807182 51807182 1 + T G COAD 51807183 + 51807163 51807203 41 TGTTGGCAAAATTAGTTTCTGGTGTCTTTAAACCAAATCAA TGTTGGCAAAATTAGTTTCGGGTGTCTTTAAACCAAATCAA < 41bp 0.717417487754841 0.38358005251877 NA NA prediction 0.434834975509683 Functional Loss - POLI ENSG00000101751 CDS Human protein_coding chr18:51807183 chr18:51807182 synonymous SNV . 0 20 hm7G_associated_SNPs_9785 0 0 1 0 1 POLI chr18:51807273 5'GT 51807273 Upstream 92bp 9216 chr22 19753961 19753961 1 + A G rs13054377 19753962 + 19753942 19753982 41 GCGACGCGGGCGGGCCAGCAGTGCTCGGGGACCCGGCGCAT GCGACGCGGGCGGGCCAGCGGTGCTCGGGGACCCGGCGCAT < 41bp 0.727688379765965 0.510291595455936 NA NA prediction 0.434793568620057 Functional Loss - TBX1 ENSG00000184058 CDS Human protein_coding chr22:19753962 chr22:19753961 synonymous SNV . 0 20 hm7G_associated_SNPs_9786 1 0 1 0 1 TBX1 chr22:19753912 3'AG 19753912 Downstream 50bp 9217 chr10 135025208 135025208 1 + A G rs41283313 135025209 + 135025189 135025229 41 CCCCTGGACGGCTCTGCCAAGCACCTGCTGGGCCTCCTGGA CCCCTGGACGGCTCTGCCAGGCACCTGCTGGGCCTCCTGGA < 41bp 0.749810417231862 0.532418499337281 NA NA prediction 0.434783835789164 Functional Loss - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135025209 chr10:135025208 nonsynonymous SNV 0.270 1 20 hm7G_associated_SNPs_9787 0 0 0 0 1 KNDC1 chr10:135025183 3'AG 135025183 Downstream 26bp 9218 chr12 58120974 58120974 1 - T C UCEC 58120973 - 58120953 58120993 41 ATTCGCGCCAAGTACGAGCAGCTACTGTTCCTGGCGCCGCT ATTCGCGCCAAGTACGAGCGGCTACTGTTCCTGGCGCCGCT < 41bp 0.733024189233686 0.515676898988549 NA NA prediction 0.434694580490274 Functional Loss - AGAP2 ENSG00000135439;ENSG00000255737 CDS Human other chr12:58120973 chr12:58120974 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9788 0 0 0 0 1 AGAP2 chr12:58121012 3'AG 58121012 Downstream 39bp 9219 chr19 36352046 36352046 1 + T G LUSC 36352047 + 36352027 36352067 41 CTGGGCTCTGGAGCCACACTGCGTCTTCCGTCGGTGGGGCC CTGGGCTCTGGAGCCACACGGCGTCTTCCGTCGGTGGGGCC < 41bp 0.717342354784709 0.360304757934145 NA NA prediction 0.434684709569418 Functional Loss - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352047 chr19:36352046 nonsynonymous SNV 0.644 3 20 hm7G_associated_SNPs_9789 0 0 0 0 1 KIRREL2 chr19:36352024 3'AG 36352024 Downstream 23bp 9220 chr17 57290105 57290105 1 + T G SKCM 57290106 + 57290086 57290126 41 ATAGCTTCTGGAAGAAAAGTGTTGTGGAAAATTGGATCATA ATAGCTTCTGGAAGAAAAGGGTTGTGGAAAATTGGATCATA < 41bp 0.717337393967855 0.406726261315754 NA NA prediction 0.43467478793571 Functional Loss - SMG8 ENSG00000167447 CDS Human protein_coding chr17:57290106 chr17:57290105 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9790 0 0 0 0 1 SMG8 chr17:57290090 3'AG 57290090 Downstream 16bp 9221 chr19 18775082 18775082 1 + A G HNSC 18775083 + 18775063 18775103 41 CCCCGCAGCACGGCCGACAAGAACGGGGCCCTCAAGTGCAC CCCCGCAGCACGGCCGACAGGAACGGGGCCCTCAAGTGCAC < 41bp 0.753079035701938 0.535751939581976 NA NA prediction 0.434654192239923 Functional Loss - KLHL26 ENSG00000167487 CDS Human protein_coding chr19:18775083 chr19:18775082 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_9791 0 0 0 0 1 KLHL26 chr19:18775071 3'AG 18775071 Downstream 12bp 9222 chr17 59534987 59534987 1 + T G rs3744447 59534988 + 59534968 59535008 41 AGATGATCATCACTAAGGCTGGCAGGTCAGCGCTGGGAGAT AGATGATCATCACTAAGGCGGGCAGGTCAGCGCTGGGAGAT < 41bp 0.905541813005536 0.688280581013363 NA NA prediction 0.434522463984346 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59534988 chr17:59534987 synonymous SNV . 0 20 hm7G_associated_SNPs_9794 2 1 0 0 2 TBX4 chr17:59534898 3'AG 59534898 Downstream 90bp 9223 chr17 59534987 59534987 1 + T G rs3744447 59534988 + 59534968 59535008 41 AGATGATCATCACTAAGGCTGGCAGGTCAGCGCTGGGAGAT AGATGATCATCACTAAGGCGGGCAGGTCAGCGCTGGGAGAT < 41bp 0.905541813005536 0.688280581013363 NA NA prediction 0.434522463984346 Functional Loss - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59534988 chr17:59534987 synonymous SNV . 0 20 hm7G_associated_SNPs_9794 2 1 0 0 2 TBX4 chr17:59534992 5'GT 59534992 Upstream 6bp 9224 chr16 2284726 2284726 1 + A G rs140972388 2284727 + 2284707 2284747 41 AAGCCGTTCAAGTGCTACAAGTGCGGCCGTGGCTTCGCCGA AAGCCGTTCAAGTGCTACAGGTGCGGCCGTGGCTTCGCCGA < 41bp 0.720330599640397 0.503133290807918 NA NA prediction 0.434394617664958 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284727 chr16:2284726 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_9795 0 0 0 0 2 E4F1 chr16:2284641 3'AG 2284641 Downstream 86bp 9225 chr16 2284726 2284726 1 + A G rs140972388 2284727 + 2284707 2284747 41 AAGCCGTTCAAGTGCTACAAGTGCGGCCGTGGCTTCGCCGA AAGCCGTTCAAGTGCTACAGGTGCGGCCGTGGCTTCGCCGA < 41bp 0.720330599640397 0.503133290807918 NA NA prediction 0.434394617664958 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284727 chr16:2284726 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_9795 0 0 0 0 2 E4F1 chr16:2284782 5'GT 2284782 Upstream 57bp 9226 chr2 27157512 27157512 1 + A G STAD 27157513 + 27157493 27157533 41 GGCTTACACTACTACCACCAGGACTGGTCCCACGCGGCTGC GGCTTACACTACTACCACCGGGACTGGTCCCACGCGGCTGC < 41bp 0.71718934927548 0.498649460639123 NA NA prediction 0.434378698550961 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157513 chr2:27157512 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9796 0 0 1 0 2 DPYSL5 chr2:27157446 3'AG 27157446 Downstream 67bp 9227 chr2 27157512 27157512 1 + A G STAD 27157513 + 27157493 27157533 41 GGCTTACACTACTACCACCAGGACTGGTCCCACGCGGCTGC GGCTTACACTACTACCACCGGGACTGGTCCCACGCGGCTGC < 41bp 0.71718934927548 0.498649460639123 NA NA prediction 0.434378698550961 Functional Loss - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27157513 chr2:27157512 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9796 0 0 1 0 2 DPYSL5 chr2:27157602 5'GT 27157602 Upstream 91bp 9228 chr6 88120319 88120319 1 + T G ESCA 88120320 + 88120300 88120340 41 TAGGTGAAAGCTGTTGTCCTGGATCCAAGTAATGGCTTTAA TAGGTGAAAGCTGTTGTCCGGGATCCAAGTAATGGCTTTAA < 41bp 0.889408797286039 0.672220564122098 NA NA prediction 0.434376466327881 Functional Loss - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88120320 chr6:88120319 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_9797 0 0 0 0 2 CFAP206 chr6:88120303 3'AG 88120303 Downstream 17bp 9229 chr6 88120319 88120319 1 + T G ESCA 88120320 + 88120300 88120340 41 TAGGTGAAAGCTGTTGTCCTGGATCCAAGTAATGGCTTTAA TAGGTGAAAGCTGTTGTCCGGGATCCAAGTAATGGCTTTAA < 41bp 0.889408797286039 0.672220564122098 NA NA prediction 0.434376466327881 Functional Loss - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88120320 chr6:88120319 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_9797 0 0 0 0 2 CFAP206 chr6:88120386 5'GT 88120386 Upstream 68bp 9230 chr3 136047686 136047686 1 + T G rs151094095 136047687 + 136047667 136047707 41 AGTTTGCCAACCCTTTCCCTGCAGCAGTGCGAGGTAGGGGA AGTTTGCCAACCCTTTCCCGGCAGCAGTGCGAGGTAGGGGA < 41bp 0.904474903491561 0.68730225542168 NA NA prediction 0.434345296139763 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:136047687 chr3:136047686 synonymous SNV . 0 20 hm7G_associated_SNPs_9799 0 0 1 0 2 PCCB chr3:136047600 3'AG 136047600 Downstream 87bp 9231 chr3 136047686 136047686 1 + T G rs151094095 136047687 + 136047667 136047707 41 AGTTTGCCAACCCTTTCCCTGCAGCAGTGCGAGGTAGGGGA AGTTTGCCAACCCTTTCCCGGCAGCAGTGCGAGGTAGGGGA < 41bp 0.904474903491561 0.68730225542168 NA NA prediction 0.434345296139763 Functional Loss - PCCB ENSG00000114054 CDS Human protein_coding chr3:136047687 chr3:136047686 synonymous SNV . 0 20 hm7G_associated_SNPs_9799 0 0 1 0 2 PCCB chr3:136047699 5'GT 136047699 Upstream 14bp 9232 chr15 75093927 75093927 1 + A G DLBC 75093928 + 75093908 75093948 41 GGCGGAGACTGTCTCCTCAAGTTCTCGCTGTGAGTGAAGCA GGCGGAGACTGTCTCCTCAGGTTCTCGCTGTGAGTGAAGCA < 41bp 0.717135738613602 0.498348774909218 NA NA prediction 0.434271477227205 Functional Loss - CSK ENSG00000103653 CDS Human protein_coding chr15:75093928 chr15:75093927 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_9802 0 0 1 0 2 CSK chr15:75093863 3'AG 75093863 Downstream 65bp 9233 chr15 75093927 75093927 1 + A G DLBC 75093928 + 75093908 75093948 41 GGCGGAGACTGTCTCCTCAAGTTCTCGCTGTGAGTGAAGCA GGCGGAGACTGTCTCCTCAGGTTCTCGCTGTGAGTGAAGCA < 41bp 0.717135738613602 0.498348774909218 NA NA prediction 0.434271477227205 Functional Loss - CSK ENSG00000103653 CDS Human protein_coding chr15:75093928 chr15:75093927 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_9802 0 0 1 0 2 CSK chr15:75093936 5'GT 75093936 Upstream 10bp 9234 chr16 1394604 1394604 1 + A G LUAD 1394605 + 1394585 1394625 41 GCTAGGCTTCCTTGCAGCCAGGACCACAGCGCCTGCCTGGG GCTAGGCTTCCTTGCAGCCGGGACCACAGCGCCTGCCTGGG < 41bp 0.765518864256338 0.54838477655724 NA NA prediction 0.434268175398195 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394605 chr16:1394604 synonymous SNV . 0 20 hm7G_associated_SNPs_9803 0 0 1 0 2 BAIAP3 chr16:1394602 3'AG 1394602 Downstream 3bp 9235 chr16 1394604 1394604 1 + A G LUAD 1394605 + 1394585 1394625 41 GCTAGGCTTCCTTGCAGCCAGGACCACAGCGCCTGCCTGGG GCTAGGCTTCCTTGCAGCCGGGACCACAGCGCCTGCCTGGG < 41bp 0.765518864256338 0.54838477655724 NA NA prediction 0.434268175398195 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394605 chr16:1394604 synonymous SNV . 0 20 hm7G_associated_SNPs_9803 0 0 1 0 2 BAIAP3 chr16:1394699 5'GT 1394699 Upstream 96bp 9236 chr6 159166549 159166549 1 + T G SKCM 159166550 + 159166530 159166570 41 GACAGCACCTGTACAGAGATGGGCAATTTTGACAATGCTAA GACAGCACCTGTACAGAGAGGGGCAATTTTGACAATGCTAA < 41bp 0.717102750158606 0.382522823305746 NA NA prediction 0.434205500317212 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159166550 chr6:159166549 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9804 0 0 0 0 1 SYTL3 chr6:159166512 3'AG 159166512 Downstream 38bp 9237 chr7 134252944 134252944 1 + T G OV 134252945 + 134252925 134252965 41 GTGAAAGAAGCGGTGAAGGTGGCCATTGATGCAGAATATCG GTGAAAGAAGCGGTGAAGGGGGCCATTGATGCAGAATATCG < 41bp 0.717093274387805 0.382533673314322 NA NA prediction 0.43418654877561 Functional Loss - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134252945 chr7:134252944 nonsynonymous SNV 0.665 0 20 hm7G_associated_SNPs_9805 0 0 0 0 1 AKR1B15 chr7:134252910 3'AG 134252910 Downstream 35bp 9238 chr22 50875967 50875967 1 + A G LIHC 50875968 + 50875948 50875988 41 ACCAGATCCAGCAGATGACAGCCAACTTCGTGGATCAGTTT ACCAGATCCAGCAGATGACGGCCAACTTCGTGGATCAGTTT < 41bp 0.718210180957684 0.501146068001956 NA NA prediction 0.434128225911457 Functional Loss - PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50875968 chr22:50875967 synonymous SNV . 0 20 hm7G_associated_SNPs_9808 0 0 1 0 2 PPP6R2 chr22:50875935 3'AG 50875935 Downstream 33bp 9239 chr22 50875967 50875967 1 + A G LIHC 50875968 + 50875948 50875988 41 ACCAGATCCAGCAGATGACAGCCAACTTCGTGGATCAGTTT ACCAGATCCAGCAGATGACGGCCAACTTCGTGGATCAGTTT < 41bp 0.718210180957684 0.501146068001956 NA NA prediction 0.434128225911457 Functional Loss - PPP6R2 ENSG00000100239 CDS Human protein_coding chr22:50875968 chr22:50875967 synonymous SNV . 0 20 hm7G_associated_SNPs_9808 0 0 1 0 2 PPP6R2 chr22:50876032 5'GT 50876032 Upstream 66bp 9240 chr22 31524234 31524234 1 + A G LUSC 31524235 + 31524215 31524255 41 AACACCTGGCCCATTCTGAAGGGCTTTCAGGAGGGGCCCCT AACACCTGGCCCATTCTGAGGGGCTTTCAGGAGGGGCCCCT < 41bp 0.73317897715356 0.516122270915923 NA NA prediction 0.434113412475274 Functional Loss - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31524235 chr22:31524234 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9810 0 0 1 0 2 INPP5J chr22:31524200 3'AG 31524200 Downstream 35bp 9241 chr22 31524234 31524234 1 + A G LUSC 31524235 + 31524215 31524255 41 AACACCTGGCCCATTCTGAAGGGCTTTCAGGAGGGGCCCCT AACACCTGGCCCATTCTGAGGGGCTTTCAGGAGGGGCCCCT < 41bp 0.73317897715356 0.516122270915923 NA NA prediction 0.434113412475274 Functional Loss - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31524235 chr22:31524234 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9810 0 0 1 0 2 INPP5J chr22:31524309 5'GT 31524309 Upstream 76bp 9242 chr16 85696635 85696635 1 + A G rs61751198 85696636 + 85696616 85696656 41 GACGAGAGCGATGAGGAGGAGGTCAGGGCCCACCTCCGTTG GACGAGAGCGATGAGGAGGGGGTCAGGGCCCACCTCCGTTG < 41bp 0.722843288328495 0.505818274742514 NA NA prediction 0.434050027171961 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85696636 chr16:85696635 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9812 0 1 1 0 2 GSE1 chr16:85696587 3'AG 85696587 Downstream 49bp 9243 chr16 85696635 85696635 1 + A G rs61751198 85696636 + 85696616 85696656 41 GACGAGAGCGATGAGGAGGAGGTCAGGGCCCACCTCCGTTG GACGAGAGCGATGAGGAGGGGGTCAGGGCCCACCTCCGTTG < 41bp 0.722843288328495 0.505818274742514 NA NA prediction 0.434050027171961 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85696636 chr16:85696635 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9812 0 1 1 0 2 GSE1 chr16:85696699 5'GT 85696699 Upstream 65bp 9244 chr5 43123341 43123341 1 + T G UCEC 43123342 + 43123322 43123362 41 AAGGCTCACAAGGCTGTTTTGGCTGCTTGTAGTAAGTTCTT AAGGCTCACAAGGCTGTTTGGGCTGCTTGTAGTAAGTTCTT < 41bp 0.716999145870572 0.407220273698079 NA NA prediction 0.433998291741144 Functional Loss - ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43123342 chr5:43123341 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9815 0 0 1 3 3 ZNF131 chr5:43123311 3'AG 43123311 Downstream 31bp 9245 chr5 43123341 43123341 1 + T G UCEC 43123342 + 43123322 43123362 41 AAGGCTCACAAGGCTGTTTTGGCTGCTTGTAGTAAGTTCTT AAGGCTCACAAGGCTGTTTGGGCTGCTTGTAGTAAGTTCTT < 41bp 0.716999145870572 0.407220273698079 NA NA prediction 0.433998291741144 Functional Loss - ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43123342 chr5:43123341 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9815 0 0 1 3 3 ZNF131 chr5:43123352 5'GT 43123352 Upstream 12bp 9246 chr5 43123341 43123341 1 + T G UCEC 43123342 + 43123322 43123362 41 AAGGCTCACAAGGCTGTTTTGGCTGCTTGTAGTAAGTTCTT AAGGCTCACAAGGCTGTTTGGGCTGCTTGTAGTAAGTTCTT < 41bp 0.716999145870572 0.407220273698079 NA NA prediction 0.433998291741144 Functional Loss - ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43123342 chr5:43123341 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9815 0 0 1 3 3 ZNF131 chr5:43123412 5'GT 43123412 Upstream 72bp 9247 chr11 113235702 113235702 1 + T G BLCA 113235703 + 113235683 113235723 41 TGCAGGTCTTGTTAAAGCTTGCAGGCAGTGACACACAGAAG TGCAGGTCTTGTTAAAGCTGGCAGGCAGTGACACACAGAAG < 41bp 0.905221668346822 0.688238815582575 NA NA prediction 0.433965705528494 Functional Loss - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113235703 chr11:113235702 synonymous SNV . 0 20 hm7G_associated_SNPs_9816 0 0 0 0 1 TTC12 chr11:113235782 5'GT 113235782 Upstream 81bp 9248 chr17 56270442 56270442 1 + A G rs11079339 56270443 + 56270423 56270463 41 CGGTCCTGCGAGACTGCATAGCAGAGGCCAAGTTGCTGGTG CGGTCCTGCGAGACTGCATGGCAGAGGCCAAGTTGCTGGTG < 41bp 0.760006275212646 0.543051226070718 NA NA prediction 0.433910098283856 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56270443 chr17:56270442 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_9817 0 0 0 0 2 EPX chr17:56270399 3'AG 56270399 Downstream 44bp 9249 chr17 56270442 56270442 1 + A G rs11079339 56270443 + 56270423 56270463 41 CGGTCCTGCGAGACTGCATAGCAGAGGCCAAGTTGCTGGTG CGGTCCTGCGAGACTGCATGGCAGAGGCCAAGTTGCTGGTG < 41bp 0.760006275212646 0.543051226070718 NA NA prediction 0.433910098283856 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56270443 chr17:56270442 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_9817 0 0 0 0 2 EPX chr17:56270492 5'GT 56270492 Upstream 51bp 9250 chrX 100503150 100503150 1 + T G LUAD 100503151 + 100503131 100503171 41 CAGGCCAGTGAGCACGTGATGGATGTGGTAGAGGTCATTCA CAGGCCAGTGAGCACGTGAGGGATGTGGTAGAGGTCATTCA < 41bp 0.902658874228599 0.685715739166971 NA NA prediction 0.433886270123256 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100503151 chrX:100503150 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9819 0 0 0 0 1 DRP2 chrX:100503078 3'AG 100503078 Downstream 73bp 9251 chr19 7601084 7601084 1 + A G COAD 7601085 + 7601065 7601105 41 ACCTATCCCCAGAAACCCCAGCCCCGGATGGCCCCCGGTAT ACCTATCCCCAGAAACCCCGGCCCCGGATGGCCCCCGGTAT < 41bp 0.716913361256562 0.485522244266467 NA NA prediction 0.433826722513124 Functional Loss - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7601085 chr19:7601084 synonymous SNV . 0 20 hm7G_associated_SNPs_9820 0 0 1 0 2 PNPLA6 chr19:7601077 3'AG 7601077 Downstream 8bp 9252 chr19 7601084 7601084 1 + A G COAD 7601085 + 7601065 7601105 41 ACCTATCCCCAGAAACCCCAGCCCCGGATGGCCCCCGGTAT ACCTATCCCCAGAAACCCCGGCCCCGGATGGCCCCCGGTAT < 41bp 0.716913361256562 0.485522244266467 NA NA prediction 0.433826722513124 Functional Loss - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7601085 chr19:7601084 synonymous SNV . 0 20 hm7G_associated_SNPs_9820 0 0 1 0 2 PNPLA6 chr19:7601159 5'GT 7601159 Upstream 76bp 9253 chr19 18538785 18538785 1 + A G PRAD 18538786 + 18538766 18538806 41 GGCGAGGCCAAGGCCTTCCAGGACTATGTGAGTCCTGGCCC GGCGAGGCCAAGGCCTTCCGGGACTATGTGAGTCCTGGCCC < 41bp 0.768944797313645 0.552082728572641 NA NA prediction 0.433724137482008 Functional Loss - SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18538786 chr19:18538785 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9822 0 0 0 0 1 SSBP4 chr19:18538792 5'GT 18538792 Upstream 8bp 9254 chr17 16336997 16336997 1 + A G HNSC 16336998 + 16336978 16337018 41 CCAGATGGCAGCCCCGATGAGCGCTGGTGCTTCAGGTGAGT CCAGATGGCAGCCCCGATGGGCGCTGGTGCTTCAGGTGAGT < 41bp 0.744250064007093 0.527401401930331 NA NA prediction 0.433697324153524 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16336998 chr17:16336997 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_9823 0 0 1 0 1 TRPV2 chr17:16337012 5'GT 16337012 Upstream 16bp 9255 chr20 47605849 47605849 1 + T G STAD 47605850 + 47605830 47605870 41 AGTGAAAAGCAGCGGCGGCTGCTGTACAACTTAGAGATGGA AGTGAAAAGCAGCGGCGGCGGCTGTACAACTTAGAGATGGA < 41bp 0.716808762792336 0.37709590423527 NA NA prediction 0.433617525584672 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47605850 chr20:47605849 nonsynonymous SNV 0.857 2 20 hm7G_associated_SNPs_9825 0 0 1 0 1 ARFGEF2 chr20:47605822 3'AG 47605822 Downstream 28bp 9256 chr2 74650614 74650614 1 + T G LUAD 74650615 + 74650595 74650635 41 TCATATTCAGTACAGGCTGTGTTTGCCCGGGGAATTGCTGC TCATATTCAGTACAGGCTGGGTTTGCCCGGGGAATTGCTGC < 41bp 0.896846829889589 0.680045325755092 NA NA prediction 0.433603008268995 Functional Loss - WDR54 ENSG00000005448 CDS Human protein_coding chr2:74650615 chr2:74650614 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9827 0 0 1 0 2 WDR54 chr2:74650605 3'AG 74650605 Downstream 10bp 9257 chr2 74650614 74650614 1 + T G LUAD 74650615 + 74650595 74650635 41 TCATATTCAGTACAGGCTGTGTTTGCCCGGGGAATTGCTGC TCATATTCAGTACAGGCTGGGTTTGCCCGGGGAATTGCTGC < 41bp 0.896846829889589 0.680045325755092 NA NA prediction 0.433603008268995 Functional Loss - WDR54 ENSG00000005448 CDS Human protein_coding chr2:74650615 chr2:74650614 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9827 0 0 1 0 2 WDR54 chr2:74650658 5'GT 74650658 Upstream 45bp 9258 chr1 19584431 19584431 1 + T G GBM 19584432 + 19584412 19584452 41 GAGCAGTTCCCCCACTCCATGGAGCCACAGCTCAGGCAGCT GAGCAGTTCCCCCACTCCAGGGAGCCACAGCTCAGGCAGCT < 41bp 0.900050297059727 0.68325843824556 NA NA prediction 0.433583717628336 Functional Loss - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19584432 chr1:19584431 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9828 0 0 1 0 1 MRTO4 chr1:19584478 5'GT 19584478 Upstream 48bp 9259 chr18 77802161 77802161 1 + T C GBM 77802162 + 77802142 77802182 41 TTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGATAGT TTGATGTCCCAGCAGACCCCGAGGAATGTGCCACCGATAGT < 41bp 0.717169694823549 0.500421674239457 NA NA prediction 0.433496041168185 Functional Loss - RBFA ENSG00000101546 CDS Human protein_coding chr18:77802162 chr18:77802161 nonsynonymous SNV 0.182 3 20 hm7G_associated_SNPs_9829 0 0 1 0 2 RBFA chr18:77802135 3'AG 77802135 Downstream 27bp 9260 chr18 77802161 77802161 1 + T C GBM 77802162 + 77802142 77802182 41 TTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGATAGT TTGATGTCCCAGCAGACCCCGAGGAATGTGCCACCGATAGT < 41bp 0.717169694823549 0.500421674239457 NA NA prediction 0.433496041168185 Functional Loss - RBFA ENSG00000101546 CDS Human protein_coding chr18:77802162 chr18:77802161 nonsynonymous SNV 0.182 3 20 hm7G_associated_SNPs_9829 0 0 1 0 2 RBFA chr18:77802219 5'GT 77802219 Upstream 59bp 9261 chr19 5857720 5857720 1 + T G rs114662403 5857721 + 5857701 5857741 41 TCTGGGCTTCCTGGAGGTTTGAGCTGGGAGCTGAAGCCCCG TCTGGGCTTCCTGGAGGTTGGAGCTGGGAGCTGAAGCCCCG < 41bp 0.716742696499 0.424024137711849 NA NA prediction 0.433485392997999 Functional Loss - LOC101928844 ENSG00000267709 ncRNA_exonic Human antisense chr19:5857721 chr19:5857720 . . 0 20 hm7G_associated_SNPs_9830 0 0 0 0 1 LOC101928844 chr19:5857627 3'AG 5857627 Downstream 94bp 9262 chr1 110768690 110768690 1 + A G UCEC 110768691 + 110768671 110768711 41 TCCTCCCCGACCCCCGAGGAGCGCCGGGCCCTGCGACGCTC TCCTCCCCGACCCCCGAGGGGCGCCGGGCCCTGCGACGCTC < 41bp 0.748528317418404 0.531798204820551 NA NA prediction 0.433460225195708 Functional Loss - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110768691 chr1:110768690 nonsynonymous SNV 0.923 5 20 hm7G_associated_SNPs_9832 0 0 0 0 1 KCNC4 chr1:110768597 3'AG 110768597 Downstream 94bp 9263 chr1 171154954 171154954 1 + T G LUAD 171154955 + 171154935 171154975 41 CCACTTGCTTTGAGAGAACTGAAGATATTGGAGGAGTGTGG CCACTTGCTTTGAGAGAACGGAAGATATTGGAGGAGTGTGG < 41bp 0.887673600241476 0.670975326030067 NA NA prediction 0.433396548422819 Functional Loss - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171154955 chr1:171154954 synonymous SNV . 0 20 hm7G_associated_SNPs_9833 0 0 0 0 1 FMO2 chr1:171154984 5'GT 171154984 Upstream 31bp 9264 chr2 103119941 103119941 1 + T G BLCA 103119942 + 103119922 103119962 41 TTAATTGCCTTTACAAAGATGCATAAATTTGAAGACATAGA TTAATTGCCTTTACAAAGAGGCATAAATTTGAAGACATAGA < 41bp 0.886772680881711 0.670137648726923 NA NA prediction 0.433270064309576 Functional Loss - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103119942 chr2:103119941 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9836 0 0 0 0 1 SLC9A4 chr2:103119907 3'AG 103119907 Downstream 35bp 9265 chr22 25007196 25007196 1 + T G CESC 25007197 + 25007177 25007217 41 GGCCGCGGATGCCAAGCAGTGCTCGAAGATTGGGAGGTGAG GGCCGCGGATGCCAAGCAGGGCTCGAAGATTGGGAGGTGAG < 41bp 0.906965233702082 0.690345233693868 NA NA prediction 0.433240000016428 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25007197 chr22:25007196 nonsynonymous SNV 0.588 3 20 hm7G_associated_SNPs_9837 0 0 0 0 1 GGT1 chr22:25007212 5'GT 25007212 Upstream 17bp 9266 chr14 78353552 78353552 1 + A G LIHC 78353553 + 78353533 78353573 41 GTGAAGGTCCAGCACCCAAAGGTGCGGGCTCAGAGCTCGAA GTGAAGGTCCAGCACCCAAGGGTGCGGGCTCAGAGCTCGAA < 41bp 0.735142681226663 0.518549463916228 NA NA prediction 0.43318643462087 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78353553 chr14:78353552 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9838 0 0 0 0 1 ADCK1 chr14:78353592 5'GT 78353592 Upstream 41bp 9267 chr2 24930741 24930741 1 + T G STAD 24930742 + 24930722 24930762 41 ACTCCTGAGGAAATAAAACTGGAGGCCCAGAGCCAGGTGGG ACTCCTGAGGAAATAAAACGGGAGGCCCAGAGCCAGGTGGG < 41bp 0.71657818922332 0.398062061407942 NA NA prediction 0.433156378446639 Functional Loss - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24930742 chr2:24930741 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9839 0 0 0 0 1 NCOA1 chr2:24930757 5'GT 24930757 Upstream 17bp 9268 chr9 140128330 140128330 1 + A G STAD 140128331 + 140128311 140128351 41 CCAGACCCAGGAGAACAGCAGCTGTGGCGCCTTCGGCCCGT CCAGACCCAGGAGAACAGCGGCTGTGGCGCCTTCGGCCCGT < 41bp 0.716536314586825 0.488017494915467 NA NA prediction 0.43307262917365 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140128331 chr9:140128330 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_9842 0 0 0 0 2 SLC34A3 chr9:140128315 3'AG 140128315 Downstream 16bp 9269 chr9 140128330 140128330 1 + A G STAD 140128331 + 140128311 140128351 41 CCAGACCCAGGAGAACAGCAGCTGTGGCGCCTTCGGCCCGT CCAGACCCAGGAGAACAGCGGCTGTGGCGCCTTCGGCCCGT < 41bp 0.716536314586825 0.488017494915467 NA NA prediction 0.43307262917365 Functional Loss - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140128331 chr9:140128330 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_9842 0 0 0 0 2 SLC34A3 chr9:140128393 5'GT 140128393 Upstream 64bp 9270 chr3 13543387 13543387 1 + T G SKCM 13543388 + 13543368 13543408 41 CAGTTTCTGTTTGAGCGTGTGGAGGGCATCTCCAGGGCTAC CAGTTTCTGTTTGAGCGTGGGGAGGGCATCTCCAGGGCTAC < 41bp 0.905086974828345 0.688599995668062 NA NA prediction 0.432973958320566 Functional Loss - HDAC11 ENSG00000163517 CDS Human protein_coding chr3:13543388 chr3:13543387 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_9843 0 0 1 0 2 HDAC11 chr3:13543371 3'AG 13543371 Downstream 17bp 9271 chr3 13543387 13543387 1 + T G SKCM 13543388 + 13543368 13543408 41 CAGTTTCTGTTTGAGCGTGTGGAGGGCATCTCCAGGGCTAC CAGTTTCTGTTTGAGCGTGGGGAGGGCATCTCCAGGGCTAC < 41bp 0.905086974828345 0.688599995668062 NA NA prediction 0.432973958320566 Functional Loss - HDAC11 ENSG00000163517 CDS Human protein_coding chr3:13543388 chr3:13543387 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_9843 0 0 1 0 2 HDAC11 chr3:13543433 5'GT 13543433 Upstream 47bp 9272 chr1 175054544 175054544 1 + T G SKCM 175054545 + 175054525 175054565 41 GCCTGCTTGTTTCCAGGTCTGCACCCGGGGACTGAGTATAA GCCTGCTTGTTTCCAGGTCGGCACCCGGGGACTGAGTATAA < 41bp 0.901638941940533 0.685188727333931 NA NA prediction 0.432900429213203 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175054545 chr1:175054544 nonsynonymous SNV 0.939 5 20 hm7G_associated_SNPs_9845 0 0 0 0 2 TNN chr1:175054541 3'AG 175054541 Downstream 4bp 9273 chr1 175054544 175054544 1 + T G SKCM 175054545 + 175054525 175054565 41 GCCTGCTTGTTTCCAGGTCTGCACCCGGGGACTGAGTATAA GCCTGCTTGTTTCCAGGTCGGCACCCGGGGACTGAGTATAA < 41bp 0.901638941940533 0.685188727333931 NA NA prediction 0.432900429213203 Functional Loss - TNN ENSG00000120332 CDS Human protein_coding chr1:175054545 chr1:175054544 nonsynonymous SNV 0.939 5 20 hm7G_associated_SNPs_9845 0 0 0 0 2 TNN chr1:175054630 5'GT 175054630 Upstream 87bp 9274 chr1 183177102 183177102 1 + T C UCEC 183177103 + 183177083 183177123 41 TGGATTCCGCTGCCTCAACTGCAATGACAACACTGATGGCA TGGATTCCGCTGCCTCAACCGCAATGACAACACTGATGGCA < 41bp 0.716412946013721 0.498735312051359 NA NA prediction 0.432825892027441 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183177103 chr1:183177102 nonsynonymous SNV 0.856 5 20 hm7G_associated_SNPs_9846 0 0 0 0 1 LAMC2 chr1:183177016 3'AG 183177016 Downstream 87bp 9275 chr17 36633905 36633905 1 + A G MESO 36633906 + 36633886 36633926 41 CTGAGCAAGGAGCGGCGGGAGCCCGGGCCGGCGGCGGCGGG CTGAGCAAGGAGCGGCGGGGGCCCGGGCCGGCGGCGGCGGG < 41bp 0.744361317387648 0.527973604352187 NA NA prediction 0.432775426070922 Functional Loss - ARHGAP23 ENSG00000225485 CDS Human other chr17:36633906 chr17:36633905 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_9847 0 0 0 0 1 ARHGAP23 chr17:36633820 3'AG 36633820 Downstream 86bp 9276 chr8 124219469 124219469 1 + T G rs56221642 124219470 + 124219450 124219490 41 GCCAGGCGGTGGAGCTGTTTGACGAGGAGTTCCGCCACCTC GCCAGGCGGTGGAGCTGTTGGACGAGGAGTTCCGCCACCTC < 41bp 0.899638249755927 0.683291600933583 NA NA prediction 0.432693297644688 Functional Loss - FAM83A ENSG00000147689 CDS Human protein_coding chr8:124219470 chr8:124219469 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_9849 0 0 1 0 1 FAM83A chr8:124219397 3'AG 124219397 Downstream 73bp 9277 chr17 45384923 45384923 1 + T C LUAD 45384924 + 45384904 45384944 41 CCTTGCCGCCCTGCTCATCTGGAAACTCCTCATCACCATCC CCTTGCCGCCCTGCTCATCCGGAAACTCCTCATCACCATCC < 41bp 0.716338847529403 0.499251125024599 NA NA prediction 0.432677695058805 Functional Loss - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45384924 chr17:45384923 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_9850 0 0 0 0 1 ITGB3 chr17:45385003 5'GT 45385003 Upstream 81bp 9278 chr19 34838870 34838870 1 + A G LUAD 34838871 + 34838851 34838891 41 CCCAGCACGGTCGCCGGCCAGGCAACCCCCGGGGCAACTGG CCCAGCACGGTCGCCGGCCGGGCAACCCCCGGGGCAACTGG < 41bp 0.726311758757992 0.509997640768401 NA NA prediction 0.432628235979182 Functional Loss - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34838871 chr19:34838870 synonymous SNV . 0 20 hm7G_associated_SNPs_9851 0 0 1 0 1 KIAA0355 chr19:34838782 3'AG 34838782 Downstream 89bp 9279 chr7 128450365 128450365 1 + T G LIHC 128450366 + 128450346 128450386 41 TCTCATTTCCAGGAAGTGTTGGAGAATCCCGATGATTCCAA TCTCATTTCCAGGAAGTGTGGGAGAATCCCGATGATTCCAA < 41bp 0.716304907574843 0.373350208559927 NA NA prediction 0.432609815149687 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128450366 chr7:128450365 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_9852 0 0 1 0 1 CCDC136 chr7:128450420 5'GT 128450420 Upstream 56bp 9280 chr16 50327338 50327338 1 + A G SKCM 50327339 + 50327319 50327359 41 GCCATCATCGAACGGCTCAAGGAGCATGGTGACCGTCGCTG GCCATCATCGAACGGCTCAGGGAGCATGGTGACCGTCGCTG < 41bp 0.74712549290534 0.530841056591819 NA NA prediction 0.432568872627043 Functional Loss - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50327339 chr16:50327338 nonsynonymous SNV 0.980 0 20 hm7G_associated_SNPs_9853 0 0 1 0 2 ADCY7 chr16:50327265 3'AG 50327265 Downstream 74bp 9281 chr16 50327338 50327338 1 + A G SKCM 50327339 + 50327319 50327359 41 GCCATCATCGAACGGCTCAAGGAGCATGGTGACCGTCGCTG GCCATCATCGAACGGCTCAGGGAGCATGGTGACCGTCGCTG < 41bp 0.74712549290534 0.530841056591819 NA NA prediction 0.432568872627043 Functional Loss - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50327339 chr16:50327338 nonsynonymous SNV 0.980 0 20 hm7G_associated_SNPs_9853 0 0 1 0 2 ADCY7 chr16:50327413 5'GT 50327413 Upstream 76bp 9282 chr2 119750786 119750786 1 + T G SKCM 119750787 + 119750767 119750807 41 TGGTACCTGGGGGACAATTTGCGATGACGAGTGGCAAAATT TGGTACCTGGGGGACAATTGGCGATGACGAGTGGCAAAATT < 41bp 0.904712375079195 0.688431823495678 NA NA prediction 0.432561103167034 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119750787 chr2:119750786 nonsynonymous SNV 0.874 4 20 hm7G_associated_SNPs_9854 0 0 0 0 2 MARCO chr2:119750700 3'AG 119750700 Downstream 87bp 9283 chr2 119750786 119750786 1 + T G SKCM 119750787 + 119750767 119750807 41 TGGTACCTGGGGGACAATTTGCGATGACGAGTGGCAAAATT TGGTACCTGGGGGACAATTGGCGATGACGAGTGGCAAAATT < 41bp 0.904712375079195 0.688431823495678 NA NA prediction 0.432561103167034 Functional Loss - MARCO ENSG00000019169 CDS Human protein_coding chr2:119750787 chr2:119750786 nonsynonymous SNV 0.874 4 20 hm7G_associated_SNPs_9854 0 0 0 0 2 MARCO chr2:119750876 5'GT 119750876 Upstream 91bp 9284 chr5 161322682 161322682 1 + T G UCEC 161322683 + 161322663 161322703 41 TCTTTACAGGAGTAACAACTGTGCTCACCATGACAACATTG TCTTTACAGGAGTAACAACGGTGCTCACCATGACAACATTG < 41bp 0.716276496604037 0.39101717982921 NA NA prediction 0.432552993208074 Functional Loss - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161322683 chr5:161322682 synonymous SNV . 0 20 hm7G_associated_SNPs_9855 0 0 0 0 1 GABRA1 chr5:161322672 3'AG 161322672 Downstream 11bp 9285 chr7 769388 769388 1 + T C UCEC 769389 + 769369 769409 41 AGGTCCGTGTGGCCGCCATTGAAGCCACAGGCGCAGTGATC AGGTCCGTGTGGCCGCCATCGAAGCCACAGGCGCAGTGATC < 41bp 0.730595408334793 0.514448148311413 NA NA prediction 0.432294520046761 Functional Loss - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:769389 chr7:769388 synonymous SNV . 0 20 hm7G_associated_SNPs_9859 0 0 1 0 3 DNAAF5 chr7:769300 3'AG 769300 Downstream 89bp 9286 chr7 769388 769388 1 + T C UCEC 769389 + 769369 769409 41 AGGTCCGTGTGGCCGCCATTGAAGCCACAGGCGCAGTGATC AGGTCCGTGTGGCCGCCATCGAAGCCACAGGCGCAGTGATC < 41bp 0.730595408334793 0.514448148311413 NA NA prediction 0.432294520046761 Functional Loss - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:769389 chr7:769388 synonymous SNV . 0 20 hm7G_associated_SNPs_9859 0 0 1 0 3 DNAAF5 chr7:769362 3'AG 769362 Downstream 27bp 9287 chr7 769388 769388 1 + T C UCEC 769389 + 769369 769409 41 AGGTCCGTGTGGCCGCCATTGAAGCCACAGGCGCAGTGATC AGGTCCGTGTGGCCGCCATCGAAGCCACAGGCGCAGTGATC < 41bp 0.730595408334793 0.514448148311413 NA NA prediction 0.432294520046761 Functional Loss - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:769389 chr7:769388 synonymous SNV . 0 20 hm7G_associated_SNPs_9859 0 0 1 0 3 DNAAF5 chr7:769484 5'GT 769484 Upstream 97bp 9288 chrX 122538599 122538599 1 + T G LUAD 122538600 + 122538580 122538620 41 AAGAAGAACCATGAGCAACTGGAAGGAAATGAACGATATGA AAGAAGAACCATGAGCAACGGGAAGGAAATGAACGATATGA < 41bp 0.716084901313886 0.394919893681098 NA NA prediction 0.432169802627772 Functional Loss - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122538600 chrX:122538599 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9860 0 0 0 1 1 GRIA3 chrX:122538559 3'AG 122538559 Downstream 41bp 9289 chr19 7743015 7743015 1 + A G UCEC 7743016 + 7742996 7743036 41 CCCAGTGCAGGCCGCCCTCAGACTCCACCCAGGTCCCCTGC CCCAGTGCAGGCCGCCCTCGGACTCCACCCAGGTCCCCTGC < 41bp 0.755602961167388 0.539522521531219 NA NA prediction 0.432160879272339 Functional Loss - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7743016 chr19:7743015 synonymous SNV . 0 20 hm7G_associated_SNPs_9861 0 0 0 0 1 MCEMP1 chr19:7742990 3'AG 7742990 Downstream 26bp 9290 chr1 28211920 28211920 1 + A G rs200906638 28211921 + 28211901 28211941 41 CAGCAAGATTCCTGCCCACAGGAAGGGCCACAGGCCCGCTA CAGCAAGATTCCTGCCCACGGGAAGGGCCACAGGCCCGCTA < 41bp 0.72223762701271 0.506161363092165 NA NA prediction 0.432152527841089 Functional Loss - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28211921 chr1:28211920 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_9862 0 0 0 0 1 THEMIS2 chr1:28211962 5'GT 28211962 Upstream 43bp 9291 chr9 140122792 140122792 1 + A G rs562531003 140122793 + 140122773 140122813 41 TGCCCAGCAGAGCCCATGCAGGTAAGAGGCCTGGGCTCAGG TGCCCAGCAGAGCCCATGCGGGTAAGAGGCCTGGGCTCAGG < 41bp 0.724192676951148 0.508124958752374 NA NA prediction 0.432135436397548 Functional Loss - RNF224 ENSG00000233198 CDS Human protein_coding chr9:140122793 chr9:140122792 nonsynonymous SNV 0.740 1 20 hm7G_associated_SNPs_9863 0 0 0 0 1 RNF224 chr9:140122793 5'GT 140122793 Upstream 2bp 9292 chr12 6833959 6833959 1 + T G UCEC 6833960 + 6833940 6833980 41 GTCTACGTGTTTGGAGAACTGCTGGACATGCCCAATGTTAG GTCTACGTGTTTGGAGAACGGCTGGACATGCCCAATGTTAG < 41bp 0.894425005184106 0.678442954765985 NA NA prediction 0.431964100836241 Functional Loss - COPS7A ENSG00000111652 CDS Human protein_coding chr12:6833960 chr12:6833959 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9864 0 0 1 0 1 COPS7A chr12:6833984 5'GT 6833984 Upstream 26bp 9293 chr11 117859131 117859131 1 + T G LUSC 117859132 + 117859112 117859152 41 GCCCTCCGTCTGTGTGGTTTGAAGCAGAATTTTTCCACCAC GCCCTCCGTCTGTGTGGTTGGAAGCAGAATTTTTCCACCAC < 41bp 0.715974051587559 0.463257639172299 NA NA prediction 0.431948103175118 Functional Loss - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117859132 chr11:117859131 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_9865 0 0 0 0 2 IL10RA chr11:117859097 3'AG 117859097 Downstream 35bp 9294 chr11 117859131 117859131 1 + T G LUSC 117859132 + 117859112 117859152 41 GCCCTCCGTCTGTGTGGTTTGAAGCAGAATTTTTCCACCAC GCCCTCCGTCTGTGTGGTTGGAAGCAGAATTTTTCCACCAC < 41bp 0.715974051587559 0.463257639172299 NA NA prediction 0.431948103175118 Functional Loss - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117859132 chr11:117859131 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_9865 0 0 0 0 2 IL10RA chr11:117859217 5'GT 117859217 Upstream 87bp 9295 chr2 219251389 219251389 1 + A G LIHC 219251390 + 219251370 219251410 41 GTCCTCTGGCTGACCATCGAGCTAGCCATTGTGGGCTCCGA GTCCTCTGGCTGACCATCGGGCTAGCCATTGTGGGCTCCGA < 41bp 0.721173127922527 0.505221589943427 NA NA prediction 0.431903075958199 Functional Loss - SLC11A1 ENSG00000018280 CDS Human protein_coding chr2:219251390 chr2:219251389 nonsynonymous SNV 0.159 4 20 hm7G_associated_SNPs_9867 0 0 0 0 1 SLC11A1 chr2:219251464 5'GT 219251464 Upstream 76bp 9296 chr7 4824001 4824001 1 + A G UCEC 4824002 + 4823982 4824022 41 GCCCGGGCACCCTGGACACAGGTGTGCGGGGTGGGGGGATG GCCCGGGCACCCTGGACACGGGTGTGCGGGGTGGGGGGATG < 41bp 0.766462238429572 0.550517417271344 NA NA prediction 0.431889642316456 Functional Loss - AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824002 chr7:4824001 synonymous SNV . 0 20 hm7G_associated_SNPs_9868 0 0 0 0 1 AP5Z1 chr7:4824002 5'GT 4824002 Upstream 2bp 9297 chr2 206610471 206610471 1 + T G UCEC 206610472 + 206610452 206610492 41 TGGCCTCTCTCCCTGCAGCTGTTCGAAGGGAACATGCACTA TGGCCTCTCTCCCTGCAGCGGTTCGAAGGGAACATGCACTA < 41bp 0.715860010614214 0.378307392987762 NA NA prediction 0.431720021228429 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206610472 chr2:206610471 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9873 0 0 0 0 1 NRP2 chr2:206610470 3'AG 206610470 Downstream 2bp 9298 chr2 179402350 179402350 1 + T G LUSC 179402351 + 179402331 179402371 41 TGGGTAACCAGGATGGAACTGCGGTGTTGCTTGCAGGAGAA TGGGTAACCAGGATGGAACGGCGGTGTTGCTTGCAGGAGAA < 41bp 0.715841797965093 0.401425084758235 NA NA prediction 0.431683595930186 Functional Loss - TTN ENSG00000155657 CDS Human protein_coding chr2:179402351 chr2:179402350 nonsynonymous SNV 0.980 2 20 hm7G_associated_SNPs_9874 0 0 1 0 1 TTN chr2:179402418 5'GT 179402418 Upstream 69bp 9299 chr19 36269237 36269237 1 + T G SKCM 36269238 + 36269218 36269258 41 TCTGGAGAGAATGAGCTGGTGTTCGGGGTGCAGGTGACCTG TCTGGAGAGAATGAGCTGGGGTTCGGGGTGCAGGTGACCTG < 41bp 0.865434862463778 0.649619922939838 NA NA prediction 0.431629879047879 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36269238 chr19:36269237 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9875 0 0 1 0 2 ARHGAP33 chr19:36269182 3'AG 36269182 Downstream 56bp 9300 chr19 36269237 36269237 1 + T G SKCM 36269238 + 36269218 36269258 41 TCTGGAGAGAATGAGCTGGTGTTCGGGGTGCAGGTGACCTG TCTGGAGAGAATGAGCTGGGGTTCGGGGTGCAGGTGACCTG < 41bp 0.865434862463778 0.649619922939838 NA NA prediction 0.431629879047879 Functional Loss - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36269238 chr19:36269237 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9875 0 0 1 0 2 ARHGAP33 chr19:36269262 5'GT 36269262 Upstream 26bp 9301 chr19 14031566 14031566 1 + A G STAD 14031567 + 14031547 14031587 41 GCTCCTATGCCCACAGCCCAGCAGCAGCTGGCCTTCCTAGA GCTCCTATGCCCACAGCCCGGCAGCAGCTGGCCTTCCTAGA < 41bp 0.728006272152969 0.512193339424748 NA NA prediction 0.431625865456441 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14031567 chr19:14031566 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_9876 0 0 0 0 1 CC2D1A chr19:14031563 3'AG 14031563 Downstream 4bp 9302 chr1 16058487 16058487 1 + A G HNSC 16058488 + 16058468 16058508 41 CCTGGAGCTAAGTGCCGAGAGCGAGGCCGAGATGGCCGAGT CCTGGAGCTAAGTGCCGAGGGCGAGGCCGAGATGGCCGAGT < 41bp 0.745991010308048 0.530208486605382 NA NA prediction 0.431565047405332 Functional Loss - PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16058488 chr1:16058487 nonsynonymous SNV 0.291 1 20 hm7G_associated_SNPs_9878 0 0 1 0 1 PLEKHM2 chr1:16058543 5'GT 16058543 Upstream 57bp 9303 chr3 52741704 52741704 1 + T G KIRC 52741705 + 52741685 52741725 41 TCCTCTTTTCTGGCCCAGCTGACACTTCCTCCATGGCCCAT TCCTCTTTTCTGGCCCAGCGGACACTTCCTCCATGGCCCAT < 41bp 0.886371345490456 0.670594900360484 NA NA prediction 0.431552890259945 Functional Loss - SPCS1 ENSG00000114902 CDS Human protein_coding chr3:52741705 chr3:52741704 nonsynonymous SNV 0.986 5 20 hm7G_associated_SNPs_9879 0 0 1 0 1 SPCS1 chr3:52741703 3'AG 52741703 Downstream 2bp 9304 chr9 101818583 101818583 1 + A G UCEC 101818584 + 101818564 101818604 41 TTGGGCCCCAAGGACCCCCAGGTGCTCCTGGTCTGCCTGGG TTGGGCCCCAAGGACCCCCGGGTGCTCCTGGTCTGCCTGGG < 41bp 0.730431446951901 0.514682200101292 NA NA prediction 0.431498493701219 Functional Loss - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101818584 chr9:101818583 synonymous SNV . 0 20 hm7G_associated_SNPs_9882 0 0 0 0 1 COL15A1 chr9:101818542 3'AG 101818542 Downstream 42bp 9305 chr1 246899321 246899321 1 + T G rs149976735 246899322 + 246899302 246899342 41 TAAAAGCATGTATTGAAAATGGAGCCAGTTGTATCGACATC TAAAAGCATGTATTGAAAAGGGAGCCAGTTGTATCGACATC < 41bp 0.894977821722898 0.67923472916504 NA NA prediction 0.431486185115715 Functional Loss - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246899322 chr1:246899321 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9884 0 0 1 0 2 SCCPDH chr1:246899277 3'AG 246899277 Downstream 45bp 9306 chr1 246899321 246899321 1 + T G rs149976735 246899322 + 246899302 246899342 41 TAAAAGCATGTATTGAAAATGGAGCCAGTTGTATCGACATC TAAAAGCATGTATTGAAAAGGGAGCCAGTTGTATCGACATC < 41bp 0.894977821722898 0.67923472916504 NA NA prediction 0.431486185115715 Functional Loss - SCCPDH ENSG00000143653 CDS Human protein_coding chr1:246899322 chr1:246899321 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9884 0 0 1 0 2 SCCPDH chr1:246899357 5'GT 246899357 Upstream 37bp 9307 chr8 17447194 17447194 1 + T G rs144184958 17447195 + 17447175 17447215 41 GTCTGCTGGCGGGGCAAACTGTAGAGCTTCGATGTAAAGGG GTCTGCTGGCGGGGCAAACGGTAGAGCTTCGATGTAAAGGG < 41bp 0.715739283418681 0.377615750799714 NA NA prediction 0.431478566837362 Functional Loss - PDGFRL ENSG00000104213 CDS Human protein_coding chr8:17447195 chr8:17447194 synonymous SNV . 0 20 hm7G_associated_SNPs_9885 0 0 0 0 1 PDGFRL chr8:17447274 5'GT 17447274 Upstream 81bp 9308 chr7 94791208 94791208 1 + T G OV 94791209 + 94791189 94791229 41 AATGACCAGATTGTGGAAGTGGATGGAATCAGCTTGGTGGG AATGACCAGATTGTGGAAGGGGATGGAATCAGCTTGGTGGG < 41bp 0.715722459511134 0.396606507978359 NA NA prediction 0.431444919022268 Functional Loss - PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94791209 chr7:94791208 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9886 0 0 1 0 2 PPP1R9A chr7:94791179 3'AG 94791179 Downstream 30bp 9309 chr7 94791208 94791208 1 + T G OV 94791209 + 94791189 94791229 41 AATGACCAGATTGTGGAAGTGGATGGAATCAGCTTGGTGGG AATGACCAGATTGTGGAAGGGGATGGAATCAGCTTGGTGGG < 41bp 0.715722459511134 0.396606507978359 NA NA prediction 0.431444919022268 Functional Loss - PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94791209 chr7:94791208 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9886 0 0 1 0 2 PPP1R9A chr7:94791283 5'GT 94791283 Upstream 76bp 9310 chr14 100594998 100594998 1 + A G SKCM 100594999 + 100594979 100595019 41 CACCCCCACTGCCAGCCGGAGGAGCCCAGGGGTCCAGCCAC CACCCCCACTGCCAGCCGGGGGAGCCCAGGGGTCCAGCCAC < 41bp 0.744467506034903 0.52875377095983 NA NA prediction 0.431427470150146 Functional Loss - EVL ENSG00000196405 CDS Human protein_coding chr14:100594999 chr14:100594998 synonymous SNV . 0 20 hm7G_associated_SNPs_9887 0 0 1 0 1 EVL chr14:100595085 5'GT 100595085 Upstream 88bp 9311 chr15 41021711 41021711 1 + T G BRCA 41021712 + 41021692 41021732 41 GTTTCCTGTAGGTATGCACTGCTTATTGTAGACAGTGCCAC GTTTCCTGTAGGTATGCACGGCTTATTGTAGACAGTGCCAC < 41bp 0.878837127498076 0.663135001181713 NA NA prediction 0.431404252632726 Functional Loss - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41021712 chr15:41021711 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9888 0 0 1 4 1 RAD51 chr15:41021703 3'AG 41021703 Downstream 9bp 9312 chr1 53544652 53544652 1 + A G rs62000361 53544653 + 53544633 53544673 41 GCAACCGACTGCGCAGCCGAGCCCTGGGCCCCCGTGCCTGG GCAACCGACTGCGCAGCCGGGCCCTGGGCCCCCGTGCCTGG < 41bp 0.752690788721593 0.537072386727271 NA NA prediction 0.431236803988645 Functional Loss - PODN ENSG00000174348 CDS Human protein_coding chr1:53544653 chr1:53544652 synonymous SNV . 0 20 hm7G_associated_SNPs_9891 0 0 0 0 1 PODN chr1:53544694 5'GT 53544694 Upstream 43bp 9313 chr12 121176974 121176974 1 + A G BLCA 121176975 + 121176955 121176995 41 GCCAAGCTGGCCGCCTCGGAGGCCGCGACCGCCATCAGCCA GCCAAGCTGGCCGCCTCGGGGGCCGCGACCGCCATCAGCCA < 41bp 0.768501750614827 0.552971262759642 NA NA prediction 0.431060975710369 Functional Loss - ACADS ENSG00000122971 CDS Human protein_coding chr12:121176975 chr12:121176974 nonsynonymous SNV 0.080 5 20 hm7G_associated_SNPs_9896 0 0 1 0 1 ACADS chr12:121176943 3'AG 121176943 Downstream 32bp 9314 chr20 39792063 39792063 1 + A G rs2228246 39792064 + 39792044 39792084 41 GGTGCAGGAGTTCATGCTCAGCTTCCTCCGAGACCCCTTAC GGTGCAGGAGTTCATGCTCGGCTTCCTCCGAGACCCCTTAC < 41bp 0.729308975411913 0.513822224733346 NA NA prediction 0.430973501357132 Functional Loss - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39792064 chr20:39792063 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9899 0 1 1 0 2 PLCG1 chr20:39792018 3'AG 39792018 Downstream 46bp 9315 chr20 39792063 39792063 1 + A G rs2228246 39792064 + 39792044 39792084 41 GGTGCAGGAGTTCATGCTCAGCTTCCTCCGAGACCCCTTAC GGTGCAGGAGTTCATGCTCGGCTTCCTCCGAGACCCCTTAC < 41bp 0.729308975411913 0.513822224733346 NA NA prediction 0.430973501357132 Functional Loss - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39792064 chr20:39792063 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_9899 0 1 1 0 2 PLCG1 chr20:39792119 5'GT 39792119 Upstream 57bp 9316 chr1 12252515 12252515 1 + A G THYM 12252516 + 12252496 12252536 41 ACATCAGACGTGGTGTGCAAGCCCTGTGCCCCGGGGACGTT ACATCAGACGTGGTGTGCAGGCCCTGTGCCCCGGGGACGTT < 41bp 0.742644100672116 0.527173140585775 NA NA prediction 0.43094192017268 Functional Loss - TNFRSF1B ENSG00000028137 CDS Human protein_coding chr1:12252516 chr1:12252515 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_9901 0 0 1 0 2 TNFRSF1B chr1:12252488 3'AG 12252488 Downstream 28bp 9317 chr1 12252515 12252515 1 + A G THYM 12252516 + 12252496 12252536 41 ACATCAGACGTGGTGTGCAAGCCCTGTGCCCCGGGGACGTT ACATCAGACGTGGTGTGCAGGCCCTGTGCCCCGGGGACGTT < 41bp 0.742644100672116 0.527173140585775 NA NA prediction 0.43094192017268 Functional Loss - TNFRSF1B ENSG00000028137 CDS Human protein_coding chr1:12252516 chr1:12252515 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_9901 0 0 1 0 2 TNFRSF1B chr1:12252581 5'GT 12252581 Upstream 67bp 9318 chr1 156209376 156209376 1 + T G rs551755441 156209377 + 156209357 156209397 41 AGGGAGCTGGTTGCTGTGCTGAGGGAGCCTGAGTGAGGAGA AGGGAGCTGGTTGCTGTGCGGAGGGAGCCTGAGTGAGGAGA < 41bp 0.887092042899347 0.671622536744941 NA NA prediction 0.430939012308811 Functional Loss - PMF1 ENSG00000160783 CDS Human protein_coding chr1:156209377 chr1:156209376 stoploss 0.996 3 20 hm7G_associated_SNPs_9902 0 0 1 0 1 PMF1 chr1:156209339 3'AG 156209339 Downstream 38bp 9319 chr6 167417287 167417287 1 + T G UCEC 167417288 + 167417268 167417308 41 CTTTGGCTGTTTTTCAACCTGAAACTAGCACAGTAAGAATA CTTTGGCTGTTTTTCAACCGGAAACTAGCACAGTAAGAATA < 41bp 0.715449584872933 0.415279608605619 NA NA prediction 0.430899169745865 Functional Loss - FGFR1OP ENSG00000213066 CDS Human protein_coding chr6:167417288 chr6:167417287 synonymous SNV . 0 20 hm7G_associated_SNPs_9903 0 0 1 0 2 FGFR1OP chr6:167417211 3'AG 167417211 Downstream 77bp 9320 chr6 167417287 167417287 1 + T G UCEC 167417288 + 167417268 167417308 41 CTTTGGCTGTTTTTCAACCTGAAACTAGCACAGTAAGAATA CTTTGGCTGTTTTTCAACCGGAAACTAGCACAGTAAGAATA < 41bp 0.715449584872933 0.415279608605619 NA NA prediction 0.430899169745865 Functional Loss - FGFR1OP ENSG00000213066 CDS Human protein_coding chr6:167417288 chr6:167417287 synonymous SNV . 0 20 hm7G_associated_SNPs_9903 0 0 1 0 2 FGFR1OP chr6:167417299 5'GT 167417299 Upstream 13bp 9321 chr16 2749829 2749829 1 + T G SKCM 2749830 + 2749810 2749850 41 TTGTCCTTGCAGGTGCCTGTGAAGCATGTGTACCGTGTGCT TTGTCCTTGCAGGTGCCTGGGAAGCATGTGTACCGTGTGCT < 41bp 0.905937039175463 0.690510890165372 NA NA prediction 0.430852298020181 Functional Loss - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2749830 chr16:2749829 nonsynonymous SNV 0.949 1 20 hm7G_associated_SNPs_9904 0 0 1 0 2 KCTD5 chr16:2749822 3'AG 2749822 Downstream 8bp 9322 chr16 2749829 2749829 1 + T G SKCM 2749830 + 2749810 2749850 41 TTGTCCTTGCAGGTGCCTGTGAAGCATGTGTACCGTGTGCT TTGTCCTTGCAGGTGCCTGGGAAGCATGTGTACCGTGTGCT < 41bp 0.905937039175463 0.690510890165372 NA NA prediction 0.430852298020181 Functional Loss - KCTD5 ENSG00000167977 CDS Human protein_coding chr16:2749830 chr16:2749829 nonsynonymous SNV 0.949 1 20 hm7G_associated_SNPs_9904 0 0 1 0 2 KCTD5 chr16:2749917 5'GT 2749917 Upstream 89bp 9323 chr16 2222312 2222312 1 + A G rs191186027 2222313 + 2222293 2222333 41 CGGGTAGCGGGCAGCGGGAAGCCCCCCATCTTTGAGGTGGA CGGGTAGCGGGCAGCGGGAGGCCCCCCATCTTTGAGGTGGA < 41bp 0.715410443409252 0.488993735404775 NA NA prediction 0.430820886818505 Functional Loss - TRAF7 ENSG00000131653 CDS Human protein_coding chr16:2222313 chr16:2222312 nonsynonymous SNV 0.043 1 20 hm7G_associated_SNPs_9906 0 0 1 0 1 TRAF7 chr16:2222375 5'GT 2222375 Upstream 64bp 9324 chr12 110205831 110205831 1 + A G rs61746553 110205832 + 110205812 110205852 41 CACAGGCGAGGCGGTGGCCAGCGCCATGCATTCCTCCCGCT CACAGGCGAGGCGGTGGCCGGCGCCATGCATTCCTCCCGCT < 41bp 0.766874551704398 0.5515275793388 NA NA prediction 0.430693944731196 Functional Loss - FAM222A ENSG00000139438 CDS Human protein_coding chr12:110205832 chr12:110205831 nonsynonymous SNV 0.981 1 20 hm7G_associated_SNPs_9909 0 0 0 0 1 FAM222A chr12:110205817 3'AG 110205817 Downstream 15bp 9325 chr12 81568637 81568637 1 + T G HNSC 81568638 + 81568618 81568658 41 GAGCATGGAGTAGCTGCCTTGTTTACAGCACCAACTGCAAT GAGCATGGAGTAGCTGCCTGGTTTACAGCACCAACTGCAAT < 41bp 0.715342536569356 0.380397743917119 NA NA prediction 0.430685073138712 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81568638 chr12:81568637 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9911 0 0 0 0 2 ACSS3 chr12:81568567 3'AG 81568567 Downstream 71bp 9326 chr12 81568637 81568637 1 + T G HNSC 81568638 + 81568618 81568658 41 GAGCATGGAGTAGCTGCCTTGTTTACAGCACCAACTGCAAT GAGCATGGAGTAGCTGCCTGGTTTACAGCACCAACTGCAAT < 41bp 0.715342536569356 0.380397743917119 NA NA prediction 0.430685073138712 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81568638 chr12:81568637 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9911 0 0 0 0 2 ACSS3 chr12:81568718 5'GT 81568718 Upstream 82bp 9327 chr11 64875710 64875710 1 + A G STAD 64875711 + 64875691 64875731 41 GAGCAGGCAGAGTGCGTGGAGCTGCTGCTGGCCCTGGGCGA GAGCAGGCAGAGTGCGTGGGGCTGCTGCTGGCCCTGGGCGA < 41bp 0.741455903019953 0.52614451184685 NA NA prediction 0.430622782346205 Functional Loss - VPS51 ENSG00000149823 CDS Human protein_coding chr11:64875711 chr11:64875710 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9912 0 0 1 0 1 VPS51 chr11:64875669 3'AG 64875669 Downstream 42bp 9328 chr19 7598461 7598461 1 + A G STAD 7598462 + 7598442 7598482 41 CTGCAGGCCTACATCGCACAGTGCCAGGACAGCCCCACCTC CTGCAGGCCTACATCGCACGGTGCCAGGACAGCCCCACCTC < 41bp 0.715291297169788 0.495992496683911 NA NA prediction 0.430582594339576 Functional Loss - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7598462 chr19:7598461 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_9913 0 0 0 0 2 MCOLN1 chr19:7598409 3'AG 7598409 Downstream 53bp 9329 chr19 7598461 7598461 1 + A G STAD 7598462 + 7598442 7598482 41 CTGCAGGCCTACATCGCACAGTGCCAGGACAGCCCCACCTC CTGCAGGCCTACATCGCACGGTGCCAGGACAGCCCCACCTC < 41bp 0.715291297169788 0.495992496683911 NA NA prediction 0.430582594339576 Functional Loss - MCOLN1 ENSG00000090674 CDS Human other chr19:7598462 chr19:7598461 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_9913 0 0 0 0 2 MCOLN1 chr19:7598539 5'GT 7598539 Upstream 79bp 9330 chr1 162731078 162731078 1 + T G SKCM 162731079 + 162731059 162731099 41 ACTTCCGCTCTGAAGCCAGTGAGTGGGAACCTAATGCCATT ACTTCCGCTCTGAAGCCAGGGAGTGGGAACCTAATGCCATT < 41bp 0.715285829162069 0.369442989318067 NA NA prediction 0.430571658324138 Functional Loss - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162731079 chr1:162731078 nonsynonymous SNV 0.613 0 20 hm7G_associated_SNPs_9914 0 0 0 0 1 DDR2 chr1:162731001 3'AG 162731001 Downstream 78bp 9331 chr3 73096390 73096390 1 + T G LUSC 73096391 + 73096371 73096411 41 TTCAAACTGGAGAAAGTGATGGATGATTTCAGAACTTCAGC TTCAAACTGGAGAAAGTGAGGGATGATTTCAGAACTTCAGC < 41bp 0.895389638300539 0.680112730936481 NA NA prediction 0.430553814728114 Functional Loss - PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73096391 chr3:73096390 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9915 0 0 0 0 1 PPP4R2 chr3:73096337 3'AG 73096337 Downstream 54bp 9332 chr1 230916421 230916421 1 + T G UCEC 230916422 + 230916402 230916442 41 CAGGAAGCTGATTTCTGTCTGAGAATCTTTTCAGAGAAAAA CAGGAAGCTGATTTCTGTCGGAGAATCTTTTCAGAGAAAAA < 41bp 0.715254503959388 0.378648894110916 NA NA prediction 0.430509007918777 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230916422 chr1:230916421 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9916 0 0 0 0 1 CAPN9 chr1:230916454 5'GT 230916454 Upstream 34bp 9333 chr19 4352959 4352959 1 + A G rs11882587 4352960 + 4352940 4352980 41 AGGAGGAGGACGTTCTGGCAGGGGTCTCAGCAGAGGACAAG AGGAGGAGGACGTTCTGGCGGGGGTCTCAGCAGAGGACAAG < 41bp 0.74109701818197 0.525864798934814 NA NA prediction 0.430464438494311 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4352960 chr19:4352959 synonymous SNV . 0 20 hm7G_associated_SNPs_9919 0 0 1 0 2 MPND chr19:4352894 3'AG 4352894 Downstream 66bp 9334 chr19 4352959 4352959 1 + A G rs11882587 4352960 + 4352940 4352980 41 AGGAGGAGGACGTTCTGGCAGGGGTCTCAGCAGAGGACAAG AGGAGGAGGACGTTCTGGCGGGGGTCTCAGCAGAGGACAAG < 41bp 0.74109701818197 0.525864798934814 NA NA prediction 0.430464438494311 Functional Loss - MPND ENSG00000008382 CDS Human protein_coding chr19:4352960 chr19:4352959 synonymous SNV . 0 20 hm7G_associated_SNPs_9919 0 0 1 0 2 MPND chr19:4353026 5'GT 4353026 Upstream 68bp 9335 chr1 32672165 32672165 1 + A G UCEC 32672166 + 32672146 32672186 41 AGGGTAGCAAATCCAGAGCAGGGGCTGTGGAACCACTTCCC AGGGTAGCAAATCCAGAGCGGGGGCTGTGGAACCACTTCCC < 41bp 0.723814326668443 0.508586698000126 NA NA prediction 0.430455257336632 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32672166 chr1:32672165 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_9920 0 0 1 0 1 IQCC chr1:32672110 3'AG 32672110 Downstream 56bp 9336 chr14 76905712 76905712 1 + A G rs143477571 76905713 + 76905693 76905733 41 CAGGATGTCCTCGGACGACAGGCACCTGGGCTCCAGCTGCG CAGGATGTCCTCGGACGACGGGCACCTGGGCTCCAGCTGCG < 41bp 0.744042615670363 0.528841702615313 NA NA prediction 0.430401826110099 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76905713 chr14:76905712 nonsynonymous SNV 0.778 5 20 hm7G_associated_SNPs_9922 1 0 0 0 1 ESRRB chr14:76905684 3'AG 76905684 Downstream 29bp 9337 chr16 30510440 30510440 1 + A G COAD 30510441 + 30510421 30510461 41 CCCTGATGTCCTTCTCTCCAGCTGAGATCCCAGTGCATGAA CCCTGATGTCCTTCTCTCCGGCTGAGATCCCAGTGCATGAA < 41bp 0.73065128021958 0.515463585078944 NA NA prediction 0.430375390281271 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30510441 chr16:30510440 synonymous SNV . 0 20 hm7G_associated_SNPs_9923 0 0 0 0 1 ITGAL chr16:30510395 3'AG 30510395 Downstream 46bp 9338 chr17 33968916 33968916 1 + T G SKCM 33968917 + 33968897 33968937 41 TGCAGCTCACTCTGCTTACTGCCATAGTGAAGCTGTTTCTC TGCAGCTCACTCTGCTTACGGCCATAGTGAAGCTGTTTCTC < 41bp 0.71517195165384 0.367415048616829 NA NA prediction 0.43034390330768 Functional Loss - AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33968917 chr17:33968916 synonymous SNV . 0 20 hm7G_associated_SNPs_9925 0 0 1 0 2 AP2B1 chr17:33968896 3'AG 33968896 Downstream 21bp 9339 chr17 33968916 33968916 1 + T G SKCM 33968917 + 33968897 33968937 41 TGCAGCTCACTCTGCTTACTGCCATAGTGAAGCTGTTTCTC TGCAGCTCACTCTGCTTACGGCCATAGTGAAGCTGTTTCTC < 41bp 0.71517195165384 0.367415048616829 NA NA prediction 0.43034390330768 Functional Loss - AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33968917 chr17:33968916 synonymous SNV . 0 20 hm7G_associated_SNPs_9925 0 0 1 0 2 AP2B1 chr17:33968994 5'GT 33968994 Upstream 79bp 9340 chr7 100609643 100609643 1 + T G SKCM 100609644 + 100609624 100609664 41 GCCGGCGCCGCGCTGCTGGTGCTGCTGCTGCTGGCGCTGGG GCCGGCGCCGCGCTGCTGGGGCTGCTGCTGCTGGCGCTGGG < 41bp 0.715098026371668 0.393049258511486 NA NA prediction 0.430196052743337 Functional Loss - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609644 chr7:100609643 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_9928 0 0 0 0 1 MUC3A chr7:100609712 5'GT 100609712 Upstream 70bp 9341 chr7 75608864 75608864 1 + A G LGG 75608865 + 75608845 75608885 41 CCCACCGCTACGGGATGCGAGGCATGTCAGCGGACCCTGAG CCCACCGCTACGGGATGCGGGGCATGTCAGCGGACCCTGAG < 41bp 0.761367730485295 0.546298716705057 NA NA prediction 0.430138027560476 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75608865 chr7:75608864 synonymous SNV . 0 20 hm7G_associated_SNPs_9930 0 0 1 0 2 POR chr7:75608769 3'AG 75608769 Downstream 96bp 9342 chr7 75608864 75608864 1 + A G LGG 75608865 + 75608845 75608885 41 CCCACCGCTACGGGATGCGAGGCATGTCAGCGGACCCTGAG CCCACCGCTACGGGATGCGGGGCATGTCAGCGGACCCTGAG < 41bp 0.761367730485295 0.546298716705057 NA NA prediction 0.430138027560476 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75608865 chr7:75608864 synonymous SNV . 0 20 hm7G_associated_SNPs_9930 0 0 1 0 2 POR chr7:75608897 5'GT 75608897 Upstream 34bp 9343 chr20 35835810 35835810 1 + T C GBM 35835811 + 35835791 35835831 41 TGCCAGTTGTGGTTGTGCCTGAGGGCTCTGCTTCCGACACT TGCCAGTTGTGGTTGTGCCCGAGGGCTCTGCTTCCGACACT < 41bp 0.715058753261648 0.495467697663663 NA NA prediction 0.430117506523296 Functional Loss - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35835811 chr20:35835810 synonymous SNV . 0 20 hm7G_associated_SNPs_9931 0 0 1 0 1 RPN2 chr20:35835852 5'GT 35835852 Upstream 43bp 9344 chr17 19316913 19316913 1 + A G rs12601817 19316914 + 19316894 19316934 41 CGGTGTTCCTGGTGGACACAGGGGATGCCATGAGCCCTGAG CGGTGTTCCTGGTGGACACGGGGGATGCCATGAGCCCTGAG < 41bp 0.743144358236323 0.52816149486364 NA NA prediction 0.429965726745367 Functional Loss - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316914 chr17:19316913 synonymous SNV . 0 20 hm7G_associated_SNPs_9932 0 0 0 0 2 RNF112 chr17:19316890 3'AG 19316890 Downstream 24bp 9345 chr17 19316913 19316913 1 + A G rs12601817 19316914 + 19316894 19316934 41 CGGTGTTCCTGGTGGACACAGGGGATGCCATGAGCCCTGAG CGGTGTTCCTGGTGGACACGGGGGATGCCATGAGCCCTGAG < 41bp 0.743144358236323 0.52816149486364 NA NA prediction 0.429965726745367 Functional Loss - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316914 chr17:19316913 synonymous SNV . 0 20 hm7G_associated_SNPs_9932 0 0 0 0 2 RNF112 chr17:19316994 5'GT 19316994 Upstream 82bp 9346 chr16 15111230 15111230 1 + T C STAD 15111231 + 15111211 15111251 41 CCTGGCCCGTGGCTGGGTTTGCCAGCTGTTCCTGCGGTGAC CCTGGCCCGTGGCTGGGTTCGCCAGCTGTTCCTGCGGTGAC < 41bp 0.728052448550995 0.513098405451527 NA NA prediction 0.429908086198936 Functional Loss - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15111231 chr16:15111230 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_9934 0 0 0 0 2 PDXDC1 chr16:15111178 3'AG 15111178 Downstream 53bp 9347 chr16 15111230 15111230 1 + T C STAD 15111231 + 15111211 15111251 41 CCTGGCCCGTGGCTGGGTTTGCCAGCTGTTCCTGCGGTGAC CCTGGCCCGTGGCTGGGTTCGCCAGCTGTTCCTGCGGTGAC < 41bp 0.728052448550995 0.513098405451527 NA NA prediction 0.429908086198936 Functional Loss - PDXDC1 ENSG00000179889 CDS Human protein_coding chr16:15111231 chr16:15111230 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_9934 0 0 0 0 2 PDXDC1 chr16:15111279 5'GT 15111279 Upstream 50bp 9348 chr1 34666441 34666441 1 + A G UCEC 34666442 + 34666422 34666462 41 TCTCAGCCAGTGGCCCCAGAGCCAGAAGGACGCCTGTGGTG TCTCAGCCAGTGGCCCCAGGGCCAGAAGGACGCCTGTGGTG < 41bp 0.763942324111313 0.548992512456011 NA NA prediction 0.429899623310605 Functional Loss - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34666442 chr1:34666441 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_9935 0 0 0 0 1 C1orf94 chr1:34666373 3'AG 34666373 Downstream 69bp 9349 chr11 122678819 122678819 1 + T G UCEC 122678820 + 122678800 122678840 41 CGCATCTTCCCTTGAAGCGTGTACCTGCCAACTTCAGGGCC CGCATCTTCCCTTGAAGCGGGTACCTGCCAACTTCAGGGCC < 41bp 0.71492787715538 0.381930945371056 NA NA prediction 0.429855754310759 Functional Loss - UBASH3B ENSG00000154127 CDS Human protein_coding chr11:122678820 chr11:122678819 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_9936 0 0 0 0 2 UBASH3B chr11:122678775 3'AG 122678775 Downstream 45bp 9350 chr11 122678819 122678819 1 + T G UCEC 122678820 + 122678800 122678840 41 CGCATCTTCCCTTGAAGCGTGTACCTGCCAACTTCAGGGCC CGCATCTTCCCTTGAAGCGGGTACCTGCCAACTTCAGGGCC < 41bp 0.71492787715538 0.381930945371056 NA NA prediction 0.429855754310759 Functional Loss - UBASH3B ENSG00000154127 CDS Human protein_coding chr11:122678820 chr11:122678819 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_9936 0 0 0 0 2 UBASH3B chr11:122678884 5'GT 122678884 Upstream 66bp 9351 chr11 282776 282776 1 + T G LUAD 282777 + 282757 282797 41 CAGGCAATGACTGACCCACTGTGCCATCTGAGCAGCCTCAC CAGGCAATGACTGACCCACGGTGCCATCTGAGCAGCCTCAC < 41bp 0.714880821113238 0.372507609854052 NA NA prediction 0.429761642226477 Functional Loss - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:282777 chr11:282776 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_9938 0 0 0 0 3 NLRP6 chr11:282702 3'AG 282702 Downstream 75bp 9352 chr11 282776 282776 1 + T G LUAD 282777 + 282757 282797 41 CAGGCAATGACTGACCCACTGTGCCATCTGAGCAGCCTCAC CAGGCAATGACTGACCCACGGTGCCATCTGAGCAGCCTCAC < 41bp 0.714880821113238 0.372507609854052 NA NA prediction 0.429761642226477 Functional Loss - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:282777 chr11:282776 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_9938 0 0 0 0 3 NLRP6 chr11:282705 3'AG 282705 Downstream 72bp 9353 chr11 282776 282776 1 + T G LUAD 282777 + 282757 282797 41 CAGGCAATGACTGACCCACTGTGCCATCTGAGCAGCCTCAC CAGGCAATGACTGACCCACGGTGCCATCTGAGCAGCCTCAC < 41bp 0.714880821113238 0.372507609854052 NA NA prediction 0.429761642226477 Functional Loss - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:282777 chr11:282776 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_9938 0 0 0 0 3 NLRP6 chr11:282797 5'GT 282797 Upstream 22bp 9354 chr8 144462004 144462004 1 + A G CHOL 144462005 + 144461985 144462025 41 ACATCCACCGGCAGGTGGCAGCCGAGTACAGGCTAGTGCAC ACATCCACCGGCAGGTGGCGGCCGAGTACAGGCTAGTGCAC < 41bp 0.744088570203664 0.529215290616161 NA NA prediction 0.429746559175005 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144462005 chr8:144462004 synonymous SNV . 0 20 hm7G_associated_SNPs_9939 0 0 1 0 1 RHPN1 chr8:144461999 3'AG 144461999 Downstream 6bp 9355 chr10 102747313 102747313 1 + A G rs568863459 102747314 + 102747294 102747334 41 AGTTTTGCTTCCGAGGTCAAGGCGAGTAGCATGTGCGGGAG AGTTTTGCTTCCGAGGTCAGGGCGAGTAGCATGTGCGGGAG < 41bp 0.714834068412741 0.49830581115789 NA NA prediction 0.429668136825483 Functional Loss - TWNK ENSG00000055950;ENSG00000107815 upstream Human other chr10:102747314 chr10:102747313 . . 0 20 hm7G_associated_SNPs_9941 0 0 0 0 1 TWNK chr10:102747370 5'GT 102747370 Upstream 58bp 9356 chr4 142145644 142145644 1 + T G CESC 142145645 + 142145625 142145665 41 TTTTTATATGTTACAGGAATGTGACAAGTGTCAGAGGTAAA TTTTTATATGTTACAGGAAGGTGACAAGTGTCAGAGGTAAA < 41bp 0.86587992309443 0.651063785280506 NA NA prediction 0.429632275627847 Functional Loss - ZNF330 ENSG00000109445 CDS Human protein_coding chr4:142145645 chr4:142145644 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9944 0 0 1 0 2 ZNF330 chr4:142145641 3'AG 142145641 Downstream 4bp 9357 chr4 142145644 142145644 1 + T G CESC 142145645 + 142145625 142145665 41 TTTTTATATGTTACAGGAATGTGACAAGTGTCAGAGGTAAA TTTTTATATGTTACAGGAAGGTGACAAGTGTCAGAGGTAAA < 41bp 0.86587992309443 0.651063785280506 NA NA prediction 0.429632275627847 Functional Loss - ZNF330 ENSG00000109445 CDS Human protein_coding chr4:142145645 chr4:142145644 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9944 0 0 1 0 2 ZNF330 chr4:142145660 5'GT 142145660 Upstream 17bp 9358 chr6 151869617 151869617 1 + T G rs192947987 151869618 + 151869598 151869638 41 ACTGAAGAGAAAGAGAAGCTGAACCAGGTATGATATGTGAA ACTGAAGAGAAAGAGAAGCGGAACCAGGTATGATATGTGAA < 41bp 0.89177051310329 0.676994862306801 NA NA prediction 0.429551301592979 Functional Loss - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151869618 chr6:151869617 nonsynonymous SNV 0.834 3 20 hm7G_associated_SNPs_9946 0 0 0 0 1 CCDC170 chr6:151869624 5'GT 151869624 Upstream 8bp 9359 chr16 85691111 85691111 1 + A G UCEC 85691112 + 85691092 85691132 41 AAGGAGGACCGGCAGTCTCAGGTGTCCGAGTTCCGGCAGCA AAGGAGGACCGGCAGTCTCGGGTGTCCGAGTTCCGGCAGCA < 41bp 0.714755883650866 0.493567620621776 NA NA prediction 0.429511767301731 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691112 chr16:85691111 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_9947 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 100bp 9360 chr15 74467204 74467204 1 + A G ACC 74467205 + 74467185 74467225 41 TCTGCAGGAGGCACCATGCAGGAGCTGCATCTGCTCTGGTG TCTGCAGGAGGCACCATGCGGGAGCTGCATCTGCTCTGGTG < 41bp 0.749158565703179 0.534430549266822 NA NA prediction 0.429456032872715 Functional Loss - ISLR ENSG00000129009 CDS Human antisense chr15:74467205 chr15:74467204 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_9950 0 0 0 0 1 ISLR chr15:74467192 3'AG 74467192 Downstream 13bp 9361 chr2 74718674 74718674 1 + A G UCEC 74718675 + 74718655 74718695 41 GGTTGGGGATTGGCCCCTCAGTGCCCGCAGAGAGAAGGGAC GGTTGGGGATTGGCCCCTCGGTGCCCGCAGAGAGAAGGGAC < 41bp 0.73014972737401 0.515439056679647 NA NA prediction 0.429421341388726 Functional Loss - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74718675 chr2:74718674 nonsynonymous SNV 0.265 0 20 hm7G_associated_SNPs_9953 0 0 1 0 1 TTC31 chr2:74718608 3'AG 74718608 Downstream 67bp 9362 chr3 183821994 183821994 1 + T G UCEC 183821995 + 183821975 183822015 41 GGATAACCCATTTATCAGCTGGAACCCAGAGGAATGTGAGG GGATAACCCATTTATCAGCGGGAACCCAGAGGAATGTGAGG < 41bp 0.902745633539331 0.688051747954388 NA NA prediction 0.429387771169886 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183821995 chr3:183821994 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_9955 0 0 0 0 2 HTR3E chr3:183821970 3'AG 183821970 Downstream 25bp 9363 chr3 183821994 183821994 1 + T G UCEC 183821995 + 183821975 183822015 41 GGATAACCCATTTATCAGCTGGAACCCAGAGGAATGTGAGG GGATAACCCATTTATCAGCGGGAACCCAGAGGAATGTGAGG < 41bp 0.902745633539331 0.688051747954388 NA NA prediction 0.429387771169886 Functional Loss - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183821995 chr3:183821994 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_9955 0 0 0 0 2 HTR3E chr3:183822079 5'GT 183822079 Upstream 86bp 9364 chr2 118575207 118575207 1 + T G COAD 118575208 + 118575188 118575228 41 AGTCTCCCCAGAAATCCACTGTATTAACCAATGGAGAAGCA AGTCTCCCCAGAAATCCACGGTATTAACCAATGGAGAAGCA < 41bp 0.714650556308835 0.406199057611457 NA NA prediction 0.42930111261767 Functional Loss - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118575208 chr2:118575207 synonymous SNV . 0 20 hm7G_associated_SNPs_9957 0 0 1 0 1 DDX18 chr2:118575304 5'GT 118575304 Upstream 98bp 9365 chr6 168439388 168439388 1 + A G LIHC 168439389 + 168439369 168439409 41 GCCAAGGATGGACGGACAGAGGTTGCGCTGCTGGCCTCTGA GCCAAGGATGGACGGACAGGGGTTGCGCTGCTGGCCTCTGA < 41bp 0.748996680959933 0.53438988214897 NA NA prediction 0.429213597621925 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168439389 chr6:168439388 nonsynonymous SNV 0.014 2 20 hm7G_associated_SNPs_9958 0 0 0 0 1 KIF25 chr6:168439409 5'GT 168439409 Upstream 22bp 9366 chr9 130980885 130980885 1 + A G STAD 130980886 + 130980866 130980906 41 GCCGAGTTCCTGCACTGCAAGGGAAAGAAATTCACCGACTT GCCGAGTTCCTGCACTGCAGGGGAAAGAAATTCACCGACTT < 41bp 0.721651211802141 0.50704930933774 NA NA prediction 0.429203804928802 Functional Loss - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130980886 chr9:130980885 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9959 0 0 1 0 1 DNM1 chr9:130980861 3'AG 130980861 Downstream 25bp 9367 chr1 207646933 207646933 1 + T C LUSC 207646934 + 207646914 207646954 41 ACCATGGTCGTCATACAGGTGGAAATACGGTCTTCTTTGTC ACCATGGTCGTCATACAGGCGGAAATACGGTCTTCTTTGTC < 41bp 0.715542960561181 0.500944168445988 NA NA prediction 0.429197584230387 Functional Loss - CR2 ENSG00000117322 CDS Human protein_coding chr1:207646934 chr1:207646933 synonymous SNV . 0 20 hm7G_associated_SNPs_9960 0 0 0 0 1 CR2 chr1:207646890 3'AG 207646890 Downstream 44bp 9368 chr10 104557825 104557825 1 + T C COAD 104557826 + 104557806 104557846 41 CTGCTGTGGACAGTCTCAGTGCTGCAACTACTACTATGAAC CTGCTGTGGACAGTCTCAGCGCTGCAACTACTACTATGAAC < 41bp 0.714491990774676 0.498137376142037 NA NA prediction 0.428983981549351 Functional Loss - WBP1L ENSG00000166272 CDS Human protein_coding chr10:104557826 chr10:104557825 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9966 0 0 1 0 2 WBP1L chr10:104557750 3'AG 104557750 Downstream 76bp 9369 chr10 104557825 104557825 1 + T C COAD 104557826 + 104557806 104557846 41 CTGCTGTGGACAGTCTCAGTGCTGCAACTACTACTATGAAC CTGCTGTGGACAGTCTCAGCGCTGCAACTACTACTATGAAC < 41bp 0.714491990774676 0.498137376142037 NA NA prediction 0.428983981549351 Functional Loss - WBP1L ENSG00000166272 CDS Human protein_coding chr10:104557826 chr10:104557825 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_9966 0 0 1 0 2 WBP1L chr10:104557852 5'GT 104557852 Upstream 28bp 9370 chrX 147009873 147009873 1 + T G UCEC 147009874 + 147009854 147009894 41 AAATGAAAAAGAGCCTTGCTGTTGGTGGTTAGCTAAAGTGA AAATGAAAAAGAGCCTTGCGGTTGGTGGTTAGCTAAAGTGA < 41bp 0.823355014019604 0.608885040613961 NA NA prediction 0.428939946811287 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147009874 chrX:147009873 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_9968 0 0 1 0 2 FMR1 chrX:147009840 3'AG 147009840 Downstream 34bp 9371 chrX 147009873 147009873 1 + T G UCEC 147009874 + 147009854 147009894 41 AAATGAAAAAGAGCCTTGCTGTTGGTGGTTAGCTAAAGTGA AAATGAAAAAGAGCCTTGCGGTTGGTGGTTAGCTAAAGTGA < 41bp 0.823355014019604 0.608885040613961 NA NA prediction 0.428939946811287 Functional Loss - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147009874 chrX:147009873 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_9968 0 0 1 0 2 FMR1 chrX:147009911 5'GT 147009911 Upstream 39bp 9372 chr1 55136529 55136529 1 + T C rs480963 55136530 + 55136510 55136550 41 GAGCTGGTGAACGTGTGTGTGCACAGCGTGTTCTCCCTGCC GAGCTGGTGAACGTGTGTGCGCACAGCGTGTTCTCCCTGCC < 41bp 0.714418001808063 0.498277316492497 NA NA prediction 0.428836003616125 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55136530 chr1:55136529 nonsynonymous SNV 0.376 2 20 hm7G_associated_SNPs_9969 0 0 0 0 2 MROH7 chr1:55136473 3'AG 55136473 Downstream 57bp 9373 chr1 55136529 55136529 1 + T C rs480963 55136530 + 55136510 55136550 41 GAGCTGGTGAACGTGTGTGTGCACAGCGTGTTCTCCCTGCC GAGCTGGTGAACGTGTGTGCGCACAGCGTGTTCTCCCTGCC < 41bp 0.714418001808063 0.498277316492497 NA NA prediction 0.428836003616125 Functional Loss - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55136530 chr1:55136529 nonsynonymous SNV 0.376 2 20 hm7G_associated_SNPs_9969 0 0 0 0 2 MROH7 chr1:55136602 5'GT 55136602 Upstream 74bp 9374 chr8 1728422 1728422 1 + T G STAD 1728423 + 1728403 1728443 41 TCTCTCCATGCAGGCGGGCTGGTCCGAGTCTCTGTTTTGGA TCTCTCCATGCAGGCGGGCGGGTCCGAGTCTCTGTTTTGGA < 41bp 0.889477909098221 0.675061396579085 NA NA prediction 0.428833025038272 Functional Loss - CLN8 ENSG00000182372 CDS Human protein_coding chr8:1728423 chr8:1728422 nonsynonymous SNV 0.169 1 20 hm7G_associated_SNPs_9970 0 0 1 0 1 CLN8 chr8:1728416 3'AG 1728416 Downstream 7bp 9375 chr22 20052089 20052089 1 + T G rs16982614 20052090 + 20052070 20052110 41 ACACTATCATCCTGGTAGATGCGGACGGCCACGTGACCTTC ACACTATCATCCTGGTAGAGGCGGACGGCCACGTGACCTTC < 41bp 0.714413157334884 0.402386607716233 NA NA prediction 0.428826314669769 Functional Loss - TANGO2 ENSG00000183597 CDS Human protein_coding chr22:20052090 chr22:20052089 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_9971 0 0 1 0 1 TANGO2 chr22:20052065 3'AG 20052065 Downstream 25bp 9376 chr11 292973 292973 1 + A G rs145280533 292974 + 292954 292994 41 TCGTGTTGAGTGGAGCCCCAGGGAGGAAAAGTACCACCTGA TCGTGTTGAGTGGAGCCCCGGGGAGGAAAAGTACCACCTGA < 41bp 0.714410548860288 0.491091991064097 NA NA prediction 0.428821097720576 Functional Loss - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292974 chr11:292973 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_9972 0 0 1 0 3 PGGHG chr11:292886 3'AG 292886 Downstream 88bp 9377 chr11 292973 292973 1 + A G rs145280533 292974 + 292954 292994 41 TCGTGTTGAGTGGAGCCCCAGGGAGGAAAAGTACCACCTGA TCGTGTTGAGTGGAGCCCCGGGGAGGAAAAGTACCACCTGA < 41bp 0.714410548860288 0.491091991064097 NA NA prediction 0.428821097720576 Functional Loss - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292974 chr11:292973 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_9972 0 0 1 0 3 PGGHG chr11:292983 5'GT 292983 Upstream 11bp 9378 chr11 292973 292973 1 + A G rs145280533 292974 + 292954 292994 41 TCGTGTTGAGTGGAGCCCCAGGGAGGAAAAGTACCACCTGA TCGTGTTGAGTGGAGCCCCGGGGAGGAAAAGTACCACCTGA < 41bp 0.714410548860288 0.491091991064097 NA NA prediction 0.428821097720576 Functional Loss - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292974 chr11:292973 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_9972 0 0 1 0 3 PGGHG chr11:292997 5'GT 292997 Upstream 25bp 9379 chr2 224828637 224828637 1 + T G CHOL 224828638 + 224828618 224828658 41 CAGCTTTGCCTTTGTATTTTGTTGGCTTATACTGGTTAGTG CAGCTTTGCCTTTGTATTTGGTTGGCTTATACTGGTTAGTG < 41bp 0.714399345598893 0.404546716971578 NA NA prediction 0.428798691197786 Functional Loss - MRPL44 ENSG00000135900 CDS Human protein_coding chr2:224828638 chr2:224828637 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9973 0 0 1 0 1 MRPL44 chr2:224828651 5'GT 224828651 Upstream 15bp 9380 chr22 25291202 25291202 1 + T C LAML 25291203 + 25291183 25291223 41 TTCTCAGTCCTCCCAGAGCTGCAGTTCGGGCCGCCAGAACA TTCTCAGTCCTCCCAGAGCCGCAGTTCGGGCCGCCAGAACA < 41bp 0.719938231116026 0.50562691248943 NA NA prediction 0.428622637253192 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25291203 chr22:25291202 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_9979 0 0 0 0 2 SGSM1 chr22:25291190 3'AG 25291190 Downstream 13bp 9381 chr22 25291202 25291202 1 + T C LAML 25291203 + 25291183 25291223 41 TTCTCAGTCCTCCCAGAGCTGCAGTTCGGGCCGCCAGAACA TTCTCAGTCCTCCCAGAGCCGCAGTTCGGGCCGCCAGAACA < 41bp 0.719938231116026 0.50562691248943 NA NA prediction 0.428622637253192 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25291203 chr22:25291202 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_9979 0 0 0 0 2 SGSM1 chr22:25291258 5'GT 25291258 Upstream 57bp 9382 chr11 89431659 89431659 1 + T G STAD 89431660 + 89431640 89431680 41 ATGATGCTCTGTTTGATATTGAAAGCAAAGTGGACCCTTCC ATGATGCTCTGTTTGATATGGAAAGCAAAGTGGACCCTTCC < 41bp 0.858391306411876 0.644105008172562 NA NA prediction 0.428572596478627 Functional Loss - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89431660 chr11:89431659 . . 0 20 hm7G_associated_SNPs_9980 0 0 0 0 1 FOLH1B chr11:89431578 3'AG 89431578 Downstream 82bp 9383 chr6 110530399 110530399 1 + T G SKCM 110530400 + 110530380 110530420 41 CATGGGCAAAATATGTGGATGAAAAAGATGTAGCCAAACCT CATGGGCAAAATATGTGGAGGAAAAAGATGTAGCCAAACCT < 41bp 0.890051900697383 0.675795560663098 NA NA prediction 0.428512680068569 Functional Loss - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110530400 chr6:110530399 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_9981 0 0 1 0 1 CDC40 chr6:110530426 5'GT 110530426 Upstream 28bp 9384 chr14 64867549 64867549 1 + T C STAD 64867550 + 64867530 64867570 41 AAAAATCAAGTCACTCAGTTGAAGGAGCAAGTACCTGGTTT AAAAATCAAGTCACTCAGTCGAAGGAGCAAGTACCTGGTTT < 41bp 0.714878804594349 0.500679693855803 NA NA prediction 0.428398221477092 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64867550 chr14:64867549 nonsynonymous SNV 0.925 2 20 hm7G_associated_SNPs_9982 0 0 1 0 2 MTHFD1 chr14:64867511 3'AG 64867511 Downstream 39bp 9385 chr14 64867549 64867549 1 + T C STAD 64867550 + 64867530 64867570 41 AAAAATCAAGTCACTCAGTTGAAGGAGCAAGTACCTGGTTT AAAAATCAAGTCACTCAGTCGAAGGAGCAAGTACCTGGTTT < 41bp 0.714878804594349 0.500679693855803 NA NA prediction 0.428398221477092 Functional Loss - MTHFD1 ENSG00000100714 CDS Human protein_coding chr14:64867550 chr14:64867549 nonsynonymous SNV 0.925 2 20 hm7G_associated_SNPs_9982 0 0 1 0 2 MTHFD1 chr14:64867595 5'GT 64867595 Upstream 47bp 9386 chr5 140167415 140167415 1 + A G SARC 140167416 + 140167396 140167436 41 CGTGTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCACTGC CGTGTCAGTGCACGCGGAGGGCGGCAAGGTGTACGCACTGC < 41bp 0.714612993633834 0.500443093213605 NA NA prediction 0.428339800840458 Functional Loss - PCDHA1 ENSG00000204970 CDS Human protein_coding chr5:140167416 chr5:140167415 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_9984 0 0 0 0 1 PCDHA1 chr5:140167477 5'GT 140167477 Upstream 63bp 9387 chr2 74900939 74900939 1 + T C LIHC 74900940 + 74900920 74900960 41 CGCATTAAAGTCCCACGGGTGGCCCGTGTGTGTGCGGTGAG CGCATTAAAGTCCCACGGGCGGCCCGTGTGTGTGCGGTGAG < 41bp 0.714958392885537 0.500788775290616 NA NA prediction 0.428339235189841 Functional Loss - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74900940 chr2:74900939 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9985 0 0 0 0 1 SEMA4F chr2:74900955 5'GT 74900955 Upstream 17bp 9388 chr5 144977 144977 1 + T C LUAD 144978 + 144958 144998 41 CTGGGGCTGGTTGTCCTGGTGGATGCACGCAGGAGTCCAGC CTGGGGCTGGTTGTCCTGGCGGATGCACGCAGGAGTCCAGC < 41bp 0.718345081863893 0.504184900617647 NA NA prediction 0.428320362492493 Functional Loss - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:144978 chr5:144977 nonsynonymous SNV 0.082 2 20 hm7G_associated_SNPs_9986 0 0 0 0 2 PLEKHG4B chr5:144942 3'AG 144942 Downstream 36bp 9389 chr5 144977 144977 1 + T C LUAD 144978 + 144958 144998 41 CTGGGGCTGGTTGTCCTGGTGGATGCACGCAGGAGTCCAGC CTGGGGCTGGTTGTCCTGGCGGATGCACGCAGGAGTCCAGC < 41bp 0.718345081863893 0.504184900617647 NA NA prediction 0.428320362492493 Functional Loss - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:144978 chr5:144977 nonsynonymous SNV 0.082 2 20 hm7G_associated_SNPs_9986 0 0 0 0 2 PLEKHG4B chr5:145035 5'GT 145035 Upstream 59bp 9390 chr18 77875529 77875529 1 + T G LUSC 77875530 + 77875510 77875550 41 GACAGCTGCAAGGAGTTACTGAAGGTAAGAGGACGTAAGTA GACAGCTGCAAGGAGTTACGGAAGGTAAGAGGACGTAAGTA < 41bp 0.888741084694473 0.674591837947976 NA NA prediction 0.428298493492993 Functional Loss - ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77875530 chr18:77875529 nonsynonymous SNV 0.953 2 20 hm7G_associated_SNPs_9987 0 0 1 0 1 ADNP2 chr18:77875533 5'GT 77875533 Upstream 5bp 9391 chr8 22037285 22037285 1 + A G LUSC 22037286 + 22037266 22037306 41 GAAACCTCCCATTGGCCAAAGGACACGGCTCAGCAAGGGGG GAAACCTCCCATTGGCCAAGGGACACGGCTCAGCAAGGGGG < 41bp 0.731965222019092 0.517827115411394 NA NA prediction 0.428276213215396 Functional Loss - BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037286 chr8:22037285 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9988 0 0 1 1 2 BMP1 chr8:22037218 3'AG 22037218 Downstream 68bp 9392 chr8 22037285 22037285 1 + A G LUSC 22037286 + 22037266 22037306 41 GAAACCTCCCATTGGCCAAAGGACACGGCTCAGCAAGGGGG GAAACCTCCCATTGGCCAAGGGACACGGCTCAGCAAGGGGG < 41bp 0.731965222019092 0.517827115411394 NA NA prediction 0.428276213215396 Functional Loss - BMP1 ENSG00000168487 CDS Human protein_coding chr8:22037286 chr8:22037285 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_9988 0 0 1 1 2 BMP1 chr8:22037342 5'GT 22037342 Upstream 58bp 9393 chr12 52451257 52451257 1 + A G LUSC 52451258 + 52451238 52451278 41 CTTCTCAAGGTCCCTGCACAGCTTGCTTGTCGATGTCCCTG CTTCTCAAGGTCCCTGCACGGCTTGCTTGTCGATGTCCCTG < 41bp 0.718176324048281 0.504054301468057 NA NA prediction 0.428244045160448 Functional Loss - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52451258 chr12:52451257 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_9989 0 0 0 0 1 NR4A1 chr12:52451314 5'GT 52451314 Upstream 58bp 9394 chr17 72350310 72350310 1 + A G LUSC 72350311 + 72350291 72350331 41 CCCGCTGCAGAGAGGAAGGAGATCCTGACTGGCACCAAGTG CCCGCTGCAGAGAGGAAGGGGATCCTGACTGGCACCAAGTG < 41bp 0.714245482315011 0.500141821735315 NA NA prediction 0.428207321159391 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72350311 chr17:72350310 nonsynonymous SNV 0.942 1 20 hm7G_associated_SNPs_9990 0 0 0 0 1 KIF19 chr17:72350301 3'AG 72350301 Downstream 10bp 9395 chr19 4496387 4496387 1 + A G UCEC 4496388 + 4496368 4496408 41 AAGAGAGTGCGGCCCGAGGAGAAGCAACAAGCCAAGTGAGC AAGAGAGTGCGGCCCGAGGGGAAGCAACAAGCCAAGTGAGC < 41bp 0.714097831676405 0.49770132120255 NA NA prediction 0.428195663352809 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4496388 chr19:4496387 nonsynonymous SNV 0.188 1 20 hm7G_associated_SNPs_9991 0 0 1 0 2 HDGFL2 chr19:4496299 3'AG 4496299 Downstream 89bp 9396 chr19 4496387 4496387 1 + A G UCEC 4496388 + 4496368 4496408 41 AAGAGAGTGCGGCCCGAGGAGAAGCAACAAGCCAAGTGAGC AAGAGAGTGCGGCCCGAGGGGAAGCAACAAGCCAAGTGAGC < 41bp 0.714097831676405 0.49770132120255 NA NA prediction 0.428195663352809 Functional Loss - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4496388 chr19:4496387 nonsynonymous SNV 0.188 1 20 hm7G_associated_SNPs_9991 0 0 1 0 2 HDGFL2 chr19:4496402 5'GT 4496402 Upstream 16bp 9397 chr1 12017915 12017915 1 + T C CHOL 12017916 + 12017896 12017936 41 CAGCTGCAGTTGAACTACCTGGGCAACTACATCCCGCGCTT CAGCTGCAGTTGAACTACCCGGGCAACTACATCCCGCGCTT < 41bp 0.722475901993547 0.508408357880704 NA NA prediction 0.428135088225687 Functional Loss - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12017916 chr1:12017915 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9994 0 0 1 0 2 PLOD1 chr1:12017899 3'AG 12017899 Downstream 17bp 9398 chr1 12017915 12017915 1 + T C CHOL 12017916 + 12017896 12017936 41 CAGCTGCAGTTGAACTACCTGGGCAACTACATCCCGCGCTT CAGCTGCAGTTGAACTACCCGGGCAACTACATCCCGCGCTT < 41bp 0.722475901993547 0.508408357880704 NA NA prediction 0.428135088225687 Functional Loss - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12017916 chr1:12017915 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_9994 0 0 1 0 2 PLOD1 chr1:12018000 5'GT 12018000 Upstream 86bp 9399 chr16 20482464 20482464 1 + T C LUSC 20482465 + 20482445 20482485 41 CTGCCATCTACTTCACTAGTGGGACCAGTGGTCTTCCCAAG CTGCCATCTACTTCACTAGCGGGACCAGTGGTCTTCCCAAG < 41bp 0.720591346962264 0.506564983350242 NA NA prediction 0.428052727224044 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20482465 chr16:20482464 synonymous SNV . 0 20 hm7G_associated_SNPs_9997 0 0 0 0 2 ACSM2A chr16:20482395 3'AG 20482395 Downstream 70bp 9400 chr16 20482464 20482464 1 + T C LUSC 20482465 + 20482445 20482485 41 CTGCCATCTACTTCACTAGTGGGACCAGTGGTCTTCCCAAG CTGCCATCTACTTCACTAGCGGGACCAGTGGTCTTCCCAAG < 41bp 0.720591346962264 0.506564983350242 NA NA prediction 0.428052727224044 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20482465 chr16:20482464 synonymous SNV . 0 20 hm7G_associated_SNPs_9997 0 0 0 0 2 ACSM2A chr16:20482538 5'GT 20482538 Upstream 75bp 9401 chr1 17599906 17599906 1 + T G UCEC 17599907 + 17599887 17599927 41 TCTTTGACTCCCCAAGGAATGGGGAACTGCAGGATTTCCCT TCTTTGACTCCCCAAGGAAGGGGGAACTGCAGGATTTCCCT < 41bp 0.908020436720824 0.694017714334447 NA NA prediction 0.428005444772753 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17599907 chr1:17599906 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_9999 0 0 0 0 2 PADI3 chr1:17599835 3'AG 17599835 Downstream 72bp 9402 chr1 17599906 17599906 1 + T G UCEC 17599907 + 17599887 17599927 41 TCTTTGACTCCCCAAGGAATGGGGAACTGCAGGATTTCCCT TCTTTGACTCCCCAAGGAAGGGGGAACTGCAGGATTTCCCT < 41bp 0.908020436720824 0.694017714334447 NA NA prediction 0.428005444772753 Functional Loss - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17599907 chr1:17599906 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_9999 0 0 0 0 2 PADI3 chr1:17599942 5'GT 17599942 Upstream 37bp 9403 chr7 142836239 142836239 1 + T G LUAD 142836240 + 142836220 142836260 41 AGTATACTGCCTGCCTATGTGACGACAATCCAAAAACCTTC AGTATACTGCCTGCCTATGGGACGACAATCCAAAAACCTTC < 41bp 0.713951293543378 0.392516149661169 NA NA prediction 0.427902587086756 Functional Loss - PIP ENSG00000159763 CDS Human protein_coding chr7:142836240 chr7:142836239 nonsynonymous SNV 0.002 5 20 hm7G_associated_SNPs_10003 0 0 0 0 2 PIP chr7:142836168 3'AG 142836168 Downstream 72bp 9404 chr7 142836239 142836239 1 + T G LUAD 142836240 + 142836220 142836260 41 AGTATACTGCCTGCCTATGTGACGACAATCCAAAAACCTTC AGTATACTGCCTGCCTATGGGACGACAATCCAAAAACCTTC < 41bp 0.713951293543378 0.392516149661169 NA NA prediction 0.427902587086756 Functional Loss - PIP ENSG00000159763 CDS Human protein_coding chr7:142836240 chr7:142836239 nonsynonymous SNV 0.002 5 20 hm7G_associated_SNPs_10003 0 0 0 0 2 PIP chr7:142836282 5'GT 142836282 Upstream 44bp 9405 chr3 113286510 113286510 1 + T G SKCM 113286511 + 113286491 113286531 41 CATCCATGGCACCCCTGGGTGCTCAGTACAAACTGCTAGTT CATCCATGGCACCCCTGGGGGCTCAGTACAAACTGCTAGTT < 41bp 0.713935859929841 0.442435983283533 NA NA prediction 0.427871719859683 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113286511 chr3:113286510 synonymous SNV . 0 20 hm7G_associated_SNPs_10006 0 0 0 0 1 SIDT1 chr3:113286557 5'GT 113286557 Upstream 48bp 9406 chr9 135865169 135865169 1 + A G STAD 135865170 + 135865150 135865190 41 ATGTGCGGCAAGGCCTTCAAGCGCTCGTCCACGCTGTCCAC ATGTGCGGCAAGGCCTTCAGGCGCTCGTCCACGCTGTCCAC < 41bp 0.761076025089756 0.547154702059593 NA NA prediction 0.427842646060325 Functional Loss - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135865170 chr9:135865169 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10007 0 0 0 0 1 GFI1B chr9:135865129 3'AG 135865129 Downstream 41bp 9407 chr16 30773931 30773931 1 + T C LUSC 30773932 + 30773912 30773952 41 GGGCCCCCGGAAAAGAAGCTGAGTCGTGAGGAGAAGACCAC GGGCCCCCGGAAAAGAAGCCGAGTCGTGAGGAGAAGACCAC < 41bp 0.726781685758508 0.512868118108756 NA NA prediction 0.427827135299504 Functional Loss - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30773932 chr16:30773931 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_10009 0 0 1 0 1 RNF40 chr16:30773998 5'GT 30773998 Upstream 68bp 9408 chr16 20489923 20489923 1 + T G LUSC 20489924 + 20489904 20489944 41 GATGATAAGGGCAACGTCCTGCCCCCCGGCACAGAAGGAGA GATGATAAGGGCAACGTCCGGCCCCCCGGCACAGAAGGAGA < 41bp 0.903737852107311 0.689825728580849 NA NA prediction 0.427824247052924 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20489924 chr16:20489923 nonsynonymous SNV 0.096 3 20 hm7G_associated_SNPs_10010 0 0 0 0 2 ACSM2A chr16:20489898 3'AG 20489898 Downstream 26bp 9409 chr16 20489923 20489923 1 + T G LUSC 20489924 + 20489904 20489944 41 GATGATAAGGGCAACGTCCTGCCCCCCGGCACAGAAGGAGA GATGATAAGGGCAACGTCCGGCCCCCCGGCACAGAAGGAGA < 41bp 0.903737852107311 0.689825728580849 NA NA prediction 0.427824247052924 Functional Loss - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20489924 chr16:20489923 nonsynonymous SNV 0.096 3 20 hm7G_associated_SNPs_10010 0 0 0 0 2 ACSM2A chr16:20489999 5'GT 20489999 Upstream 77bp 9410 chr2 71361161 71361161 1 + T G rs138051249 71361162 + 71361142 71361182 41 ACATAACAAATGTTCATGATGATGAGCTGGATTCAAACAAA ACATAACAAATGTTCATGAGGATGAGCTGGATTCAAACAAA < 41bp 0.891924336336499 0.678024801696016 NA NA prediction 0.427799069280967 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71361162 chr2:71361161 nonsynonymous SNV 0.177 0 20 hm7G_associated_SNPs_10011 0 0 1 0 2 MPHOSPH10 chr2:71361078 3'AG 71361078 Downstream 84bp 9411 chr2 71361161 71361161 1 + T G rs138051249 71361162 + 71361142 71361182 41 ACATAACAAATGTTCATGATGATGAGCTGGATTCAAACAAA ACATAACAAATGTTCATGAGGATGAGCTGGATTCAAACAAA < 41bp 0.891924336336499 0.678024801696016 NA NA prediction 0.427799069280967 Functional Loss - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71361162 chr2:71361161 nonsynonymous SNV 0.177 0 20 hm7G_associated_SNPs_10011 0 0 1 0 2 MPHOSPH10 chr2:71361235 5'GT 71361235 Upstream 75bp 9412 chr1 154317137 154317137 1 + T C rs145714388 154317138 + 154317118 154317158 41 AAAGCCCGGGAGAAGATGATGGACTCATCCCGCTCCGTAGG AAAGCCCGGGAGAAGATGACGGACTCATCCCGCTCCGTAGG < 41bp 0.716322986552829 0.502459332241697 NA NA prediction 0.427727308622265 Functional Loss - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317138 chr1:154317137 nonsynonymous SNV 0.903 0 20 hm7G_associated_SNPs_10012 0 0 1 0 1 ATP8B2 chr1:154317117 3'AG 154317117 Downstream 21bp 9413 chrX 10094318 10094318 1 + T C SKCM 10094319 + 10094299 10094339 41 CAGTTATACGTGTGTTCAGTGACTCCGCAGCTGCAGGAAGA CAGTTATACGTGTGTTCAGCGACTCCGCAGCTGCAGGAAGA < 41bp 0.730655599336756 0.516794697030896 NA NA prediction 0.427721804611721 Functional Loss - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10094319 chrX:10094318 nonsynonymous SNV 0.092 1 20 hm7G_associated_SNPs_10013 0 0 0 0 1 WWC3 chrX:10094346 5'GT 10094346 Upstream 29bp 9414 chr6 160828142 160828142 1 + T C rs3918291 160828143 + 160828123 160828163 41 CTGGGGTTGTGGTGGCCTTTGCACCAAACTTCCCTGTGTTT CTGGGGTTGTGGTGGCCTTCGCACCAAACTTCCCTGTGTTT < 41bp 0.723792779639185 0.509959060781776 NA NA prediction 0.427667437714818 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160828143 chr6:160828142 synonymous SNV . 0 20 hm7G_associated_SNPs_10015 0 0 1 0 2 SLC22A3 chr6:160828073 3'AG 160828073 Downstream 70bp 9415 chr6 160828142 160828142 1 + T C rs3918291 160828143 + 160828123 160828163 41 CTGGGGTTGTGGTGGCCTTTGCACCAAACTTCCCTGTGTTT CTGGGGTTGTGGTGGCCTTCGCACCAAACTTCCCTGTGTTT < 41bp 0.723792779639185 0.509959060781776 NA NA prediction 0.427667437714818 Functional Loss - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160828143 chr6:160828142 synonymous SNV . 0 20 hm7G_associated_SNPs_10015 0 0 1 0 2 SLC22A3 chr6:160828227 5'GT 160828227 Upstream 86bp 9416 chr16 57778336 57778336 1 + A G LUAD 57778337 + 57778317 57778357 41 CCACACATCCCCAGTGGAGAGCGTCCGCCTCAACACCCCCG CCACACATCCCCAGTGGAGGGCGTCCGCCTCAACACCCCCG < 41bp 0.775112197251001 0.561386653359823 NA NA prediction 0.427451087782358 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778337 chr16:57778336 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10022 0 0 0 0 2 KATNB1 chr16:57778306 3'AG 57778306 Downstream 31bp 9417 chr16 57778336 57778336 1 + A G LUAD 57778337 + 57778317 57778357 41 CCACACATCCCCAGTGGAGAGCGTCCGCCTCAACACCCCCG CCACACATCCCCAGTGGAGGGCGTCCGCCTCAACACCCCCG < 41bp 0.775112197251001 0.561386653359823 NA NA prediction 0.427451087782358 Functional Loss - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778337 chr16:57778336 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10022 0 0 0 0 2 KATNB1 chr16:57778423 5'GT 57778423 Upstream 88bp 9418 chr10 105048203 105048203 1 + T G SKCM 105048204 + 105048184 105048224 41 CTTCCCAATCCAAGTTACCTGCTCCCACCTAGAATCCTCAG CTTCCCAATCCAAGTTACCGGCTCCCACCTAGAATCCTCAG < 41bp 0.897295905541174 0.683584274513264 NA NA prediction 0.427423262055821 Functional Loss - INA ENSG00000148798 CDS Human protein_coding chr10:105048204 chr10:105048203 nonsynonymous SNV 0.820 1 20 hm7G_associated_SNPs_10023 0 0 1 0 1 INA chr10:105048117 3'AG 105048117 Downstream 87bp 9419 chr8 39821189 39821189 1 + T G UCEC 39821190 + 39821170 39821210 41 ACAAACTTCCTCAATTGATTGATGCTCACCAGCTTCAAGCT ACAAACTTCCTCAATTGATGGATGCTCACCAGCTTCAAGCT < 41bp 0.713706269726579 0.375574795673584 NA NA prediction 0.427412539453158 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39821190 chr8:39821189 nonsynonymous SNV 0.046 4 20 hm7G_associated_SNPs_10024 0 0 0 1 2 IDO2 chr8:39821127 3'AG 39821127 Downstream 63bp 9420 chr8 39821189 39821189 1 + T G UCEC 39821190 + 39821170 39821210 41 ACAAACTTCCTCAATTGATTGATGCTCACCAGCTTCAAGCT ACAAACTTCCTCAATTGATGGATGCTCACCAGCTTCAAGCT < 41bp 0.713706269726579 0.375574795673584 NA NA prediction 0.427412539453158 Functional Loss - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39821190 chr8:39821189 nonsynonymous SNV 0.046 4 20 hm7G_associated_SNPs_10024 0 0 0 1 2 IDO2 chr8:39821222 5'GT 39821222 Upstream 34bp 9421 chr3 47890237 47890237 1 + T C COAD 47890238 + 47890218 47890258 41 CGTTGCCTGCACCCACTACTGGTGGTCGTTTCCTGCCTCAC CGTTGCCTGCACCCACTACCGGTGGTCGTTTCCTGCCTCAC < 41bp 0.721830883737794 0.508162380429702 NA NA prediction 0.427337006616184 Functional Loss - DHX30 ENSG00000132153 CDS Human protein_coding chr3:47890238 chr3:47890237 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_10026 0 0 1 0 1 DHX30 chr3:47890307 5'GT 47890307 Upstream 71bp 9422 chr3 138191246 138191246 1 + A G rs61361298 138191247 + 138191227 138191267 41 AGCTGGGGAGCCCATACACAGGACCTGAAGCCCTAAAGAAA AGCTGGGGAGCCCATACACGGGACCTGAAGCCCTAAAGAAA < 41bp 0.716749691388105 0.503095787774418 NA NA prediction 0.427307807227373 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138191247 chr3:138191246 synonymous SNV . 0 20 hm7G_associated_SNPs_10027 0 0 1 0 1 ESYT3 chr3:138191205 3'AG 138191205 Downstream 42bp 9423 chr17 56277078 56277078 1 + A G UCEC 56277079 + 56277059 56277099 41 ATGTTCCGCTTGGACAGTCAGTACCGGGCCTCCGCACCCAA ATGTTCCGCTTGGACAGTCGGTACCGGGCCTCCGCACCCAA < 41bp 0.713628987926828 0.498989190084113 NA NA prediction 0.427257975853655 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56277079 chr17:56277078 nonsynonymous SNV 0.950 0 20 hm7G_associated_SNPs_10028 0 0 0 0 1 EPX chr17:56277155 5'GT 56277155 Upstream 78bp 9424 chr2 109276124 109276124 1 + T C OV 109276125 + 109276105 109276145 41 AGGGCGGCTTTGCGCCCGCTGAGAAGATCGTGAACAGTAAT AGGGCGGCTTTGCGCCCGCCGAGAAGATCGTGAACAGTAAT < 41bp 0.720905532717932 0.507278217732246 NA NA prediction 0.427254629971373 Functional Loss - LIMS1 ENSG00000169756 CDS Human protein_coding chr2:109276125 chr2:109276124 synonymous SNV . 0 20 hm7G_associated_SNPs_10029 0 0 1 0 2 LIMS1 chr2:109276061 3'AG 109276061 Downstream 64bp 9425 chr2 109276124 109276124 1 + T C OV 109276125 + 109276105 109276145 41 AGGGCGGCTTTGCGCCCGCTGAGAAGATCGTGAACAGTAAT AGGGCGGCTTTGCGCCCGCCGAGAAGATCGTGAACAGTAAT < 41bp 0.720905532717932 0.507278217732246 NA NA prediction 0.427254629971373 Functional Loss - LIMS1 ENSG00000169756 CDS Human protein_coding chr2:109276125 chr2:109276124 synonymous SNV . 0 20 hm7G_associated_SNPs_10029 0 0 1 0 2 LIMS1 chr2:109276220 5'GT 109276220 Upstream 97bp 9426 chr16 67201793 67201793 1 + A G UCEC 67201794 + 67201774 67201814 41 AAAGGGAGCTTCAGCCCCGAGGGGCCCAGGAATGCCCAACA AAAGGGAGCTTCAGCCCCGGGGGGCCCAGGAATGCCCAACA < 41bp 0.745890249083668 0.53230426748585 NA NA prediction 0.427171963195637 Functional Loss - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201794 chr16:67201793 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_10032 0 0 1 0 2 HSF4 chr16:67201727 3'AG 67201727 Downstream 67bp 9427 chr16 67201793 67201793 1 + A G UCEC 67201794 + 67201774 67201814 41 AAAGGGAGCTTCAGCCCCGAGGGGCCCAGGAATGCCCAACA AAAGGGAGCTTCAGCCCCGGGGGGCCCAGGAATGCCCAACA < 41bp 0.745890249083668 0.53230426748585 NA NA prediction 0.427171963195637 Functional Loss - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67201794 chr16:67201793 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_10032 0 0 1 0 2 HSF4 chr16:67201850 5'GT 67201850 Upstream 58bp 9428 chr15 91803605 91803605 1 + T C UCEC 91803606 + 91803586 91803626 41 CAAGTCCATGACACCAACATGAGAGCTAAGGGGACCCCAGA CAAGTCCATGACACCAACACGAGAGCTAAGGGGACCCCAGA < 41bp 0.713549544029797 0.498968297966769 NA NA prediction 0.427099088059593 Functional Loss - SV2B ENSG00000185518 CDS Human protein_coding chr15:91803606 chr15:91803605 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10033 0 0 0 1 2 SV2B chr15:91803550 3'AG 91803550 Downstream 56bp 9429 chr15 91803605 91803605 1 + T C UCEC 91803606 + 91803586 91803626 41 CAAGTCCATGACACCAACATGAGAGCTAAGGGGACCCCAGA CAAGTCCATGACACCAACACGAGAGCTAAGGGGACCCCAGA < 41bp 0.713549544029797 0.498968297966769 NA NA prediction 0.427099088059593 Functional Loss - SV2B ENSG00000185518 CDS Human protein_coding chr15:91803606 chr15:91803605 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10033 0 0 0 1 2 SV2B chr15:91803639 5'GT 91803639 Upstream 35bp 9430 chr20 47626800 47626800 1 + T C LGG 47626801 + 47626781 47626821 41 CCGGGACATGGCGATCCGCTGCATTGCCCAGATGGTGAACT CCGGGACATGGCGATCCGCCGCATTGCCCAGATGGTGAACT < 41bp 0.720022955416446 0.506522346815977 NA NA prediction 0.427001217200938 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47626801 chr20:47626800 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10034 0 0 1 0 1 ARFGEF2 chr20:47626769 3'AG 47626769 Downstream 32bp 9431 chr22 24034547 24034547 1 + T C COAD 24034548 + 24034528 24034568 41 CACCTCCATTTTGTTCAACTGGCCCCCCGAAAACACTTCAG CACCTCCATTTTGTTCAACCGGCCCCCCGAAAACACTTCAG < 41bp 0.723381526196142 0.509888510247824 NA NA prediction 0.426986031896637 Functional Loss - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24034548 chr22:24034547 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_10035 0 0 0 0 1 RGL4 chr22:24034522 3'AG 24034522 Downstream 26bp 9432 chr1 36639074 36639074 1 + A G UCEC 36639075 + 36639055 36639095 41 CACAGCTCTCCAGGACATAAGACCAGTGAGTAGGCTGGAGG CACAGCTCTCCAGGACATAGGACCAGTGAGTAGGCTGGAGG < 41bp 0.713486236690102 0.497496839562552 NA NA prediction 0.426972473380204 Functional Loss - MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36639075 chr1:36639074 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_10037 0 0 1 0 1 MAP7D1 chr1:36639079 5'GT 36639079 Upstream 6bp 9433 chr4 128635180 128635180 1 + T G LUAD 128635181 + 128635161 128635201 41 AAGAACATGGTGTGTTGTTTGAATGTTCACCTGGAAACTGG AAGAACATGGTGTGTTGTTGGAATGTTCACCTGGAAACTGG < 41bp 0.71348549446875 0.383995514385493 NA NA prediction 0.426970988937499 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128635181 chr4:128635180 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10038 0 0 1 7 1 INTU chr4:128635091 3'AG 128635091 Downstream 90bp 9434 chr7 98984335 98984335 1 + A G COAD 98984336 + 98984316 98984356 41 ATCTGCCCCAACAACCATGAGGTGCATATCTATGAAAAGAG ATCTGCCCCAACAACCATGGGGTGCATATCTATGAAAAGAG < 41bp 0.71706418164453 0.503585471950629 NA NA prediction 0.426957419387802 Functional Loss - ARPC1B ENSG00000130429;ENSG00000241685 CDS Human other chr7:98984336 chr7:98984335 stoploss 0.747 3 20 hm7G_associated_SNPs_10039 0 0 1 3 2 ARPC1B chr7:98984308 3'AG 98984308 Downstream 28bp 9435 chr7 98984335 98984335 1 + A G COAD 98984336 + 98984316 98984356 41 ATCTGCCCCAACAACCATGAGGTGCATATCTATGAAAAGAG ATCTGCCCCAACAACCATGGGGTGCATATCTATGAAAAGAG < 41bp 0.71706418164453 0.503585471950629 NA NA prediction 0.426957419387802 Functional Loss - ARPC1B ENSG00000130429;ENSG00000241685 CDS Human protein_coding chr7:98984336 chr7:98984335 stoploss 0.747 3 20 hm7G_associated_SNPs_10039 0 0 1 3 2 ARPC1B chr7:98984412 5'GT 98984412 Upstream 78bp 9436 chr1 150293957 150293957 1 + A G rs3767630 150293958 + 150293938 150293978 41 TGGCGGCGGCGGTGGCGGTAGCGACGGCACGCCGTAGGGCG TGGCGGCGGCGGTGGCGGTGGCGACGGCACGCCGTAGGGCG < 41bp 0.733032059908926 0.519572461325214 NA NA prediction 0.426919197167425 Functional Loss - PRPF3 ENSG00000117360 UTR5 Human protein_coding chr1:150293958 chr1:150293957 . . 0 20 hm7G_associated_SNPs_10042 1 0 0 0 1 PRPF3 chr1:150294041 5'GT 150294041 Upstream 85bp 9437 chr10 94397252 94397252 1 + T G UCEC 94397253 + 94397233 94397273 41 GGTTGAGTCACAAAAGCAATGTGGAAACCTAACTGAAGACC GGTTGAGTCACAAAAGCAAGGTGGAAACCTAACTGAAGACC < 41bp 0.71343469644889 0.397260585504846 NA NA prediction 0.42686939289778 Functional Loss - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94397253 chr10:94397252 nonsynonymous SNV 0.331 1 20 hm7G_associated_SNPs_10044 0 0 1 0 1 KIF11 chr10:94397302 5'GT 94397302 Upstream 51bp 9438 chr1 158061341 158061341 1 + A G STAD 158061342 + 158061322 158061362 41 GCCATCATCCAGCTGGAAGAGCGAGGTGACTGGTAGTGCTG GCCATCATCCAGCTGGAAGGGCGAGGTGACTGGTAGTGCTG < 41bp 0.71336310540956 0.495037722603274 NA NA prediction 0.426726210819121 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158061342 chr1:158061341 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_10046 0 0 0 0 1 KIRREL chr1:158061346 5'GT 158061346 Upstream 6bp 9439 chr12 7295832 7295832 1 + A G LUSC 7295833 + 7295813 7295853 41 ACCTTCAACCATGCCCTGCAGCATGTGGCTTACATGAACAC ACCTTCAACCATGCCCTGCGGCATGTGGCTTACATGAACAC < 41bp 0.713361401972365 0.497013193404537 NA NA prediction 0.426722803944731 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7295833 chr12:7295832 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10047 0 0 1 0 2 CLSTN3 chr12:7295759 3'AG 7295759 Downstream 74bp 9440 chr12 7295832 7295832 1 + A G LUSC 7295833 + 7295813 7295853 41 ACCTTCAACCATGCCCTGCAGCATGTGGCTTACATGAACAC ACCTTCAACCATGCCCTGCGGCATGTGGCTTACATGAACAC < 41bp 0.713361401972365 0.497013193404537 NA NA prediction 0.426722803944731 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7295833 chr12:7295832 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10047 0 0 1 0 2 CLSTN3 chr12:7295907 5'GT 7295907 Upstream 76bp 9441 chr1 44401384 44401384 1 + A G rs2242637 44401385 + 44401365 44401405 41 CACTGCCCCTGGCCTAGGCAGCAGGTGAGTGGTTCTCCCAG CACTGCCCCTGGCCTAGGCGGCAGGTGAGTGGTTCTCCCAG < 41bp 0.717903031326305 0.504553794867795 NA NA prediction 0.42669847291702 Functional Loss - ARTN ENSG00000117407 CDS Human protein_coding chr1:44401385 chr1:44401384 nonsynonymous SNV 0.830 0 20 hm7G_associated_SNPs_10048 0 0 0 0 1 ARTN chr1:44401388 5'GT 44401388 Upstream 5bp 9442 chr5 150843128 150843128 1 + T C UCEC 150843129 + 150843109 150843149 41 TTCAGATGGTTCCAGACCTTGATCCACCTGTTAAAAGGCAA TTCAGATGGTTCCAGACCTCGATCCACCTGTTAAAAGGCAA < 41bp 0.713332660327916 0.497555242128361 NA NA prediction 0.426665320655831 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150843129 chr5:150843128 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10050 0 0 1 0 2 SLC36A1 chr5:150843114 3'AG 150843114 Downstream 15bp 9443 chr5 150843128 150843128 1 + T C UCEC 150843129 + 150843109 150843149 41 TTCAGATGGTTCCAGACCTTGATCCACCTGTTAAAAGGCAA TTCAGATGGTTCCAGACCTCGATCCACCTGTTAAAAGGCAA < 41bp 0.713332660327916 0.497555242128361 NA NA prediction 0.426665320655831 Functional Loss - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150843129 chr5:150843128 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10050 0 0 1 0 2 SLC36A1 chr5:150843204 5'GT 150843204 Upstream 77bp 9444 chr20 35807694 35807694 1 - T C rs377599270 35807693 - 35807673 35807713 41 GCTCGGGAAAGTGGCTCCAAGAGCCCGCCACAGGGGACGCC GCTCGGGAAAGTGGCTCCAGGAGCCCGCCACAGGGGACGCC < 41bp 0.713311592715088 0.490507740000776 NA NA prediction 0.426623185430176 Functional Loss - MROH8 ENSG00000101353 CDS Human protein_coding chr20:35807693 chr20:35807694 synonymous SNV . 0 20 hm7G_associated_SNPs_10051 0 0 0 0 1 MROH8 chr20:35807626 5'GT 35807626 Upstream 69bp 9445 chr19 54696036 54696036 1 + A G LIHC 54696037 + 54696017 54696057 41 AGATCTGCTCTCCTTGTCCAGCTGGCCACTGCCAGGCCTCG AGATCTGCTCTCCTTGTCCGGCTGGCCACTGCCAGGCCTCG < 41bp 0.713292530150074 0.487353331137518 NA NA prediction 0.426585060300148 Functional Loss - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54696037 chr19:54696036 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_10052 0 0 1 0 1 TSEN34 chr19:54695967 3'AG 54695967 Downstream 70bp 9446 chr19 54410114 54410114 1 + A G rs73937614 54410115 + 54410095 54410135 41 CGTGCACCCGGATGCCCGCAGCCCCACCAGCCCAGTGCCTG CGTGCACCCGGATGCCCGCGGCCCCACCAGCCCAGTGCCTG < 41bp 0.713292064457195 0.491570500062059 NA NA prediction 0.426584128914389 Functional Loss - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54410115 chr19:54410114 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_10053 1 0 0 0 1 PRKCG chr19:54410145 5'GT 54410145 Upstream 32bp 9447 chr19 4429560 4429560 1 + A G UCEC 4429561 + 4429541 4429581 41 TGGGGTACCTGGAATAAGAAGACGGCACTCATCCGCGCGCG TGGGGTACCTGGAATAAGAGGACGGCACTCATCCGCGCGCG < 41bp 0.717731498678608 0.504461985343593 NA NA prediction 0.42653902667003 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4429561 chr19:4429560 nonsynonymous SNV 0.395 0 20 hm7G_associated_SNPs_10055 0 0 1 0 1 CHAF1A chr19:4429603 5'GT 4429603 Upstream 44bp 9448 chr1 110166661 110166661 1 + A G rs370440300 110166662 + 110166642 110166682 41 TGCAGCTTCACTGGCAAACAGGCGGGCAAGGGGCACAGGGC TGCAGCTTCACTGGCAAACGGGCGGGCAAGGGGCACAGGGC < 41bp 0.746308879291986 0.53312840412731 NA NA prediction 0.426360950329352 Functional Loss - AMPD2 ENSG00000116337 UTR5 Human protein_coding chr1:110166662 chr1:110166661 . . 0 20 hm7G_associated_SNPs_10061 0 0 0 0 1 AMPD2 chr1:110166711 5'GT 110166711 Upstream 51bp 9449 chr2 231906092 231906092 1 + A G COAD 231906093 + 231906073 231906113 41 TGGAGCCGGAGGAAGAACCAGGATGTTGCTGCCTGCAGAAG TGGAGCCGGAGGAAGAACCGGGATGTTGCTGCCTGCAGAAG < 41bp 0.741843882114833 0.528692494060492 NA NA prediction 0.426302776108682 Functional Loss - C2orf72 ENSG00000204128 CDS Human protein_coding chr2:231906093 chr2:231906092 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_10062 0 0 1 0 1 C2orf72 chr2:231906011 3'AG 231906011 Downstream 82bp 9450 chr11 125280723 125280723 1 + T C UCEC 125280724 + 125280704 125280744 41 GTAACCTCCCAGGGTCAGGTGGTCACCCAAGCAATCCCCCA GTAACCTCCCAGGGTCAGGCGGTCACCCAAGCAATCCCCCA < 41bp 0.72196425842516 0.508818264837037 NA NA prediction 0.426291987176245 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125280724 chr11:125280723 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10063 0 0 0 0 2 PKNOX2 chr11:125280675 3'AG 125280675 Downstream 49bp 9451 chr11 125280723 125280723 1 + T C UCEC 125280724 + 125280704 125280744 41 GTAACCTCCCAGGGTCAGGTGGTCACCCAAGCAATCCCCCA GTAACCTCCCAGGGTCAGGCGGTCACCCAAGCAATCCCCCA < 41bp 0.72196425842516 0.508818264837037 NA NA prediction 0.426291987176245 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125280724 chr11:125280723 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10063 0 0 0 0 2 PKNOX2 chr11:125280772 5'GT 125280772 Upstream 50bp 9452 chr17 40120702 40120702 1 + A G rs34353668 40120703 + 40120683 40120723 41 ACCCTCCGCAAAGCCGGCCAGGTCTTCCTGGAAGAGCTGGG ACCCTCCGCAAAGCCGGCCGGGTCTTCCTGGAAGAGCTGGG < 41bp 0.718074569412782 0.504929279868949 NA NA prediction 0.426290579087666 Functional Loss - CNP ENSG00000173786 CDS Human protein_coding chr17:40120703 chr17:40120702 nonsynonymous SNV 0.963 1 20 hm7G_associated_SNPs_10064 0 0 1 0 1 CNP chr17:40120758 5'GT 40120758 Upstream 57bp 9453 chr5 147807284 147807284 1 + T C UCEC 147807285 + 147807265 147807305 41 GTGTTGTGAATGGCCCGGATGGTACGAGATCCGCCTTTTCC GTGTTGTGAATGGCCCGGACGGTACGAGATCCGCCTTTTCC < 41bp 0.718533278888058 0.505395869495739 NA NA prediction 0.426274818784637 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147807285 chr5:147807284 synonymous SNV . 0 20 hm7G_associated_SNPs_10065 0 0 1 0 1 FBXO38 chr5:147807285 5'GT 147807285 Upstream 2bp 9454 chr17 40705858 40705858 1 + A G COAD 40705859 + 40705839 40705879 41 CCAGCAAGTTCGCGCTCGAAGGCTTATGCGAGAGTCTGGCG CCAGCAAGTTCGCGCTCGAGGGCTTATGCGAGAGTCTGGCG < 41bp 0.753873383704821 0.54073751500051 NA NA prediction 0.426271737408622 Functional Loss - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705859 chr17:40705858 synonymous SNV . 0 20 hm7G_associated_SNPs_10066 0 0 0 0 2 HSD17B1 chr17:40705812 3'AG 40705812 Downstream 47bp 9455 chr17 40705858 40705858 1 + A G COAD 40705859 + 40705839 40705879 41 CCAGCAAGTTCGCGCTCGAAGGCTTATGCGAGAGTCTGGCG CCAGCAAGTTCGCGCTCGAGGGCTTATGCGAGAGTCTGGCG < 41bp 0.753873383704821 0.54073751500051 NA NA prediction 0.426271737408622 Functional Loss - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705859 chr17:40705858 synonymous SNV . 0 20 hm7G_associated_SNPs_10066 0 0 0 0 2 HSD17B1 chr17:40705905 5'GT 40705905 Upstream 48bp 9456 chr1 180897700 180897700 1 + A G UCEC 180897701 + 180897681 180897721 41 ATCGTGCCCACCATTACCCAGGGCAGCCGGTGAGTGGGACC ATCGTGCCCACCATTACCCGGGGCAGCCGGTGAGTGGGACC < 41bp 0.760330110380149 0.547199973113382 NA NA prediction 0.426260274533534 Functional Loss - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180897701 chr1:180897700 nonsynonymous SNV 0.149 0 20 hm7G_associated_SNPs_10067 0 0 0 0 1 KIAA1614 chr1:180897709 5'GT 180897709 Upstream 10bp 9457 chr15 85383002 85383002 1 + A G UCS 85383003 + 85382983 85383023 41 AGGGCATTGTGTCCTGCTCAGGGGTCCTGGAGGTGGGCACC AGGGCATTGTGTCCTGCTCGGGGGTCCTGGAGGTGGGCACC < 41bp 0.71770544961045 0.504582064666984 NA NA prediction 0.426246769886934 Functional Loss - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85383003 chr15:85383002 synonymous SNV . 0 20 hm7G_associated_SNPs_10069 0 0 1 0 1 ALPK3 chr15:85382933 3'AG 85382933 Downstream 70bp 9458 chr14 24649011 24649011 1 + T G UCEC 24649012 + 24648992 24649032 41 CTTGATCCCTATAGGGCAGTGGCACTGGAGCTGCAGGCTAA CTTGATCCCTATAGGGCAGGGGCACTGGAGCTGCAGGCTAA < 41bp 0.905993036759836 0.692905663325904 NA NA prediction 0.426174746867863 Functional Loss - REC8 ENSG00000100918 CDS Human protein_coding chr14:24649012 chr14:24649011 nonsynonymous SNV 0.938 2 20 hm7G_associated_SNPs_10071 0 0 1 0 1 REC8 chr14:24649006 3'AG 24649006 Downstream 6bp 9459 chr8 21849412 21849412 1 + T C UCEC 21849413 + 21849393 21849433 41 CAGTATGAGCAGTTCATGCTGCCACTCACAGCAGCATTTGA CAGTATGAGCAGTTCATGCCGCCACTCACAGCAGCATTTGA < 41bp 0.72634590962994 0.513267881351024 NA NA prediction 0.426156056557833 Functional Loss - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21849413 chr8:21849412 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_10072 0 0 1 0 2 XPO7 chr8:21849379 3'AG 21849379 Downstream 34bp 9460 chr8 21849412 21849412 1 + T C UCEC 21849413 + 21849393 21849433 41 CAGTATGAGCAGTTCATGCTGCCACTCACAGCAGCATTTGA CAGTATGAGCAGTTCATGCCGCCACTCACAGCAGCATTTGA < 41bp 0.72634590962994 0.513267881351024 NA NA prediction 0.426156056557833 Functional Loss - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21849413 chr8:21849412 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_10072 0 0 1 0 2 XPO7 chr8:21849485 5'GT 21849485 Upstream 74bp 9461 chr8 22475937 22475937 1 + T G OV 22475938 + 22475918 22475958 41 GTTCTTTGATGCCAACTGGTGTGGCTACTTGCACCGGCGAG GTTCTTTGATGCCAACTGGGGTGGCTACTTGCACCGGCGAG < 41bp 0.713035111185694 0.3770393010566 NA NA prediction 0.426070222371388 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475938 chr8:22475937 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10074 0 0 1 0 2 CCAR2 chr8:22475862 3'AG 22475862 Downstream 76bp 9462 chr8 22475937 22475937 1 + T G OV 22475938 + 22475918 22475958 41 GTTCTTTGATGCCAACTGGTGTGGCTACTTGCACCGGCGAG GTTCTTTGATGCCAACTGGGGTGGCTACTTGCACCGGCGAG < 41bp 0.713035111185694 0.3770393010566 NA NA prediction 0.426070222371388 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475938 chr8:22475937 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10074 0 0 1 0 2 CCAR2 chr8:22476008 5'GT 22476008 Upstream 72bp 9463 chr17 27064414 27064414 1 + A G STAD 27064415 + 27064395 27064435 41 GCTTCGCCAGCTGGTCCTGAGTCTACTCAGCCTGGAGCCTG GCTTCGCCAGCTGGTCCTGGGTCTACTCAGCCTGGAGCCTG < 41bp 0.728135204416439 0.515113680968417 NA NA prediction 0.426043046896045 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064415 chr17:27064414 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_10075 0 0 1 0 1 NEK8 chr17:27064324 3'AG 27064324 Downstream 91bp 9464 chr5 179133303 179133303 1 + T C UCEC 179133304 + 179133284 179133324 41 CAGGGGAAGTATATTTTGCTGATTCTTTTGACAGAGGAACT CAGGGGAAGTATATTTTGCCGATTCTTTTGACAGAGGAACT < 41bp 0.713014312242665 0.495986308880409 NA NA prediction 0.42602862448533 Functional Loss - CANX ENSG00000127022 CDS Human protein_coding chr5:179133304 chr5:179133303 synonymous SNV . 0 20 hm7G_associated_SNPs_10076 0 0 1 0 1 CANX chr5:179133259 3'AG 179133259 Downstream 45bp 9465 chr1 156627952 156627952 1 + A G UCEC 156627953 + 156627933 156627973 41 GAACCCTGGGCAGCCTGACAGCTACTTCCTGTCTGGAGAGA GAACCCTGGGCAGCCTGACGGCTACTTCCTGTCTGGAGAGA < 41bp 0.742860866961743 0.529877433672681 NA NA prediction 0.425966866578124 Functional Loss - BCAN ENSG00000132692 CDS Human protein_coding chr1:156627953 chr1:156627952 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10077 0 0 0 0 1 BCAN chr1:156627919 3'AG 156627919 Downstream 34bp 9466 chr11 62650443 62650443 1 + A G KIRC 62650444 + 62650424 62650464 41 AACTCGTGGTTCTCCACTCAGGTTGACACTGTGGCCACCAA AACTCGTGGTTCTCCACTCGGGTTGACACTGTGGCCACCAA < 41bp 0.726805547623424 0.513823631245815 NA NA prediction 0.425963832755219 Functional Loss - SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62650444 chr11:62650443 nonsynonymous SNV 0.039 1 20 hm7G_associated_SNPs_10078 0 0 1 1 2 SLC3A2 chr11:62650380 3'AG 62650380 Downstream 64bp 9467 chr11 62650443 62650443 1 + A G KIRC 62650444 + 62650424 62650464 41 AACTCGTGGTTCTCCACTCAGGTTGACACTGTGGCCACCAA AACTCGTGGTTCTCCACTCGGGTTGACACTGTGGCCACCAA < 41bp 0.726805547623424 0.513823631245815 NA NA prediction 0.425963832755219 Functional Loss - SLC3A2 ENSG00000168003 CDS Human protein_coding chr11:62650444 chr11:62650443 nonsynonymous SNV 0.039 1 20 hm7G_associated_SNPs_10078 0 0 1 1 2 SLC3A2 chr11:62650471 5'GT 62650471 Upstream 29bp 9468 chr15 42631928 42631928 1 + T C rs36023127 42631929 + 42631909 42631949 41 TAGTGCGTTGGTACCAGGCTGGAGCCTACCAGCCCTTCTTC TAGTGCGTTGGTACCAGGCCGGAGCCTACCAGCCCTTCTTC < 41bp 0.72864234003283 0.5156672219657 NA NA prediction 0.425950236134261 Functional Loss - GANC ENSG00000214013 CDS Human protein_coding chr15:42631929 chr15:42631928 synonymous SNV . 0 20 hm7G_associated_SNPs_10079 0 0 0 0 1 GANC chr15:42631867 3'AG 42631867 Downstream 62bp 9469 chrX 86888816 86888816 1 + T G LUAD 86888817 + 86888797 86888837 41 GATGGAGCTATCTAAATACTGTAGAAAGATGGGACCCTGAG GATGGAGCTATCTAAATACGGTAGAAAGATGGGACCCTGAG < 41bp 0.889404328524876 0.676433817296881 NA NA prediction 0.42594102245599 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86888817 chrX:86888816 synonymous SNV . 0 20 hm7G_associated_SNPs_10080 0 0 0 0 2 KLHL4 chrX:86888749 3'AG 86888749 Downstream 68bp 9470 chrX 86888816 86888816 1 + T G LUAD 86888817 + 86888797 86888837 41 GATGGAGCTATCTAAATACTGTAGAAAGATGGGACCCTGAG GATGGAGCTATCTAAATACGGTAGAAAGATGGGACCCTGAG < 41bp 0.889404328524876 0.676433817296881 NA NA prediction 0.42594102245599 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86888817 chrX:86888816 synonymous SNV . 0 20 hm7G_associated_SNPs_10080 0 0 0 0 2 KLHL4 chrX:86888911 5'GT 86888911 Upstream 96bp 9471 chrX 152811575 152811575 1 + A G COAD 152811576 + 152811556 152811596 41 GGATGGGGCCATGGAGAGTAGCCAGACCAAAGGTAACGGGC GGATGGGGCCATGGAGAGTGGCCAGACCAAAGGTAACGGGC < 41bp 0.766316028830543 0.55334725948926 NA NA prediction 0.425937538682568 Functional Loss - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152811576 chrX:152811575 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10081 0 0 0 0 2 ATP2B3 chrX:152811546 3'AG 152811546 Downstream 30bp 9472 chrX 152811575 152811575 1 + A G COAD 152811576 + 152811556 152811596 41 GGATGGGGCCATGGAGAGTAGCCAGACCAAAGGTAACGGGC GGATGGGGCCATGGAGAGTGGCCAGACCAAAGGTAACGGGC < 41bp 0.766316028830543 0.55334725948926 NA NA prediction 0.425937538682568 Functional Loss - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152811576 chrX:152811575 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10081 0 0 0 0 2 ATP2B3 chrX:152811587 5'GT 152811587 Upstream 13bp 9473 chr9 138438684 138438684 1 + A G UCEC 138438685 + 138438665 138438705 41 GGACTTTCCGGAGGACAGGAGGCCCAGGAAGGTGTCCCCAG GGACTTTCCGGAGGACAGGGGGCCCAGGAAGGTGTCCCCAG < 41bp 0.759280905762016 0.546406824453396 NA NA prediction 0.425748162617239 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138438685 chr9:138438684 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_10086 0 0 0 0 2 OBP2A chr9:138438624 3'AG 138438624 Downstream 61bp 9474 chr9 138438684 138438684 1 + A G UCEC 138438685 + 138438665 138438705 41 GGACTTTCCGGAGGACAGGAGGCCCAGGAAGGTGTCCCCAG GGACTTTCCGGAGGACAGGGGGCCCAGGAAGGTGTCCCCAG < 41bp 0.759280905762016 0.546406824453396 NA NA prediction 0.425748162617239 Functional Loss - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138438685 chr9:138438684 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_10086 0 0 0 0 2 OBP2A chr9:138438757 5'GT 138438757 Upstream 74bp 9475 chr1 92446894 92446894 1 + T G BLCA 92446895 + 92446875 92446915 41 GAATTGGAAAAGCGGTTACTGGATGTTAATAATCAGTTAAA GAATTGGAAAAGCGGTTACGGGATGTTAATAATCAGTTAAA < 41bp 0.71286325197479 0.390983559092249 NA NA prediction 0.42572650394958 Functional Loss - BRDT ENSG00000137948 CDS Human protein_coding chr1:92446895 chr1:92446894 nonsynonymous SNV 0.625 2 20 hm7G_associated_SNPs_10089 0 0 0 0 2 BRDT chr1:92446825 3'AG 92446825 Downstream 70bp 9476 chr1 92446894 92446894 1 + T G BLCA 92446895 + 92446875 92446915 41 GAATTGGAAAAGCGGTTACTGGATGTTAATAATCAGTTAAA GAATTGGAAAAGCGGTTACGGGATGTTAATAATCAGTTAAA < 41bp 0.71286325197479 0.390983559092249 NA NA prediction 0.42572650394958 Functional Loss - BRDT ENSG00000137948 CDS Human protein_coding chr1:92446895 chr1:92446894 nonsynonymous SNV 0.625 2 20 hm7G_associated_SNPs_10089 0 0 0 0 2 BRDT chr1:92446938 5'GT 92446938 Upstream 45bp 9477 chr14 65197868 65197868 1 + A G LUAD 65197869 + 65197849 65197889 41 GACATGAAGAGGAGGCATGAGCACGCGGTCCGGCTCCAGGT GACATGAAGAGGAGGCATGGGCACGCGGTCCGGCTCCAGGT < 41bp 0.747935980594518 0.535076933985392 NA NA prediction 0.425718093218252 Functional Loss - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197869 chr14:65197868 nonsynonymous SNV 0.861 4 20 hm7G_associated_SNPs_10090 0 0 1 0 1 PLEKHG3 chr14:65197887 5'GT 65197887 Upstream 20bp 9478 chr6 160189642 160189642 1 + T G UCEC 160189643 + 160189623 160189663 41 TACAGATGCATTTCACAACTGTCATATGGGTATTACAGGTA TACAGATGCATTTCACAACGGTCATATGGGTATTACAGGTA < 41bp 0.712803902666066 0.459043004152755 NA NA prediction 0.425607805332131 Functional Loss - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160189643 chr6:160189642 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_10092 0 0 1 0 2 ACAT2 chr6:160189543 3'AG 160189543 Downstream 100bp 9479 chr6 160189642 160189642 1 + T G UCEC 160189643 + 160189623 160189663 41 TACAGATGCATTTCACAACTGTCATATGGGTATTACAGGTA TACAGATGCATTTCACAACGGTCATATGGGTATTACAGGTA < 41bp 0.712803902666066 0.459043004152755 NA NA prediction 0.425607805332131 Functional Loss - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160189643 chr6:160189642 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_10092 0 0 1 0 2 ACAT2 chr6:160189660 5'GT 160189660 Upstream 19bp 9480 chr2 220502304 220502304 1 + T G LUAD 220502305 + 220502285 220502325 41 CTTGTTATCCACACACAGGTGTTCACAGAGCACCCACTGCT CTTGTTATCCACACACAGGGGTTCACAGAGCACCCACTGCT < 41bp 0.712791337756431 0.375963060022007 NA NA prediction 0.425582675512862 Functional Loss - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220502305 chr2:220502304 nonsynonymous SNV 0.748 5 20 hm7G_associated_SNPs_10093 0 0 0 0 1 SLC4A3 chr2:220502303 3'AG 220502303 Downstream 2bp 9481 chr15 80452781 80452781 1 + T C UCEC 80452782 + 80452762 80452802 41 TCCCAGGCTTCTGCCACGATGCACCTTCCAGCCACCATAGG TCCCAGGCTTCTGCCACGACGCACCTTCCAGCCACCATAGG < 41bp 0.728694063303937 0.515921737466962 NA NA prediction 0.42554465167395 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80452782 chr15:80452781 nonsynonymous SNV 0.718 5 20 hm7G_associated_SNPs_10094 0 0 1 0 3 FAH chr15:80452752 3'AG 80452752 Downstream 30bp 9482 chr15 80452781 80452781 1 + T C UCEC 80452782 + 80452762 80452802 41 TCCCAGGCTTCTGCCACGATGCACCTTCCAGCCACCATAGG TCCCAGGCTTCTGCCACGACGCACCTTCCAGCCACCATAGG < 41bp 0.728694063303937 0.515921737466962 NA NA prediction 0.42554465167395 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80452782 chr15:80452781 nonsynonymous SNV 0.718 5 20 hm7G_associated_SNPs_10094 0 0 1 0 3 FAH chr15:80452801 5'GT 80452801 Upstream 21bp 9483 chr15 80452781 80452781 1 + T C UCEC 80452782 + 80452762 80452802 41 TCCCAGGCTTCTGCCACGATGCACCTTCCAGCCACCATAGG TCCCAGGCTTCTGCCACGACGCACCTTCCAGCCACCATAGG < 41bp 0.728694063303937 0.515921737466962 NA NA prediction 0.42554465167395 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80452782 chr15:80452781 nonsynonymous SNV 0.718 5 20 hm7G_associated_SNPs_10094 0 0 1 0 3 FAH chr15:80452865 5'GT 80452865 Upstream 85bp 9484 chr4 113574298 113574298 1 + T G UCEC 113574299 + 113574279 113574319 41 AAGGGGATACAGAATGCCATGCTAGATTTAAAACTCCTGAG AAGGGGATACAGAATGCCAGGCTAGATTTAAAACTCCTGAG < 41bp 0.899683719081254 0.686939407200919 NA NA prediction 0.425488623760669 Functional Loss - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113574299 chr4:113574298 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10095 0 0 1 0 2 LARP7 chr4:113574233 3'AG 113574233 Downstream 66bp 9485 chr4 113574298 113574298 1 + T G UCEC 113574299 + 113574279 113574319 41 AAGGGGATACAGAATGCCATGCTAGATTTAAAACTCCTGAG AAGGGGATACAGAATGCCAGGCTAGATTTAAAACTCCTGAG < 41bp 0.899683719081254 0.686939407200919 NA NA prediction 0.425488623760669 Functional Loss - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113574299 chr4:113574298 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10095 0 0 1 0 2 LARP7 chr4:113574392 5'GT 113574392 Upstream 95bp 9486 chr2 103281621 103281621 1 + T C SKCM 103281622 + 103281602 103281642 41 TTGAGACCATTGATGTGTTTGCAGGAATCGCCAACTTCTTT TTGAGACCATTGATGTGTTCGCAGGAATCGCCAACTTCTTT < 41bp 0.724222929785866 0.511547616222473 NA NA prediction 0.425350627126786 Functional Loss - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103281622 chr2:103281621 synonymous SNV . 0 20 hm7G_associated_SNPs_10098 0 0 0 0 1 SLC9A2 chr2:103281559 3'AG 103281559 Downstream 63bp 9487 chr19 18968157 18968157 1 + T C COAD 18968158 + 18968138 18968178 41 GTAGGCGACCACTGCCAGCTGGGCCCAGTGGTGATGTGCAA GTAGGCGACCACTGCCAGCCGGGCCCAGTGGTGATGTGCAA < 41bp 0.714072668984517 0.501406843668577 NA NA prediction 0.42533165063188 Functional Loss - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18968158 chr19:18968157 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_10099 0 0 1 0 1 UPF1 chr19:18968129 3'AG 18968129 Downstream 29bp 9488 chr12 58006877 58006877 1 + T G COAD 58006878 + 58006858 58006898 41 GTTGGATCATTCCAAACATTGTCTCAGTGTGGAAACTGAGG GTTGGATCATTCCAAACATGGTCTCAGTGTGGAAACTGAGG < 41bp 0.796403839990641 0.58374618821402 NA NA prediction 0.425315303553242 Functional Loss - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58006878 chr12:58006877 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10100 0 0 1 0 2 ARHGEF25 chr12:58006824 3'AG 58006824 Downstream 54bp 9489 chr12 58006877 58006877 1 + T G COAD 58006878 + 58006858 58006898 41 GTTGGATCATTCCAAACATTGTCTCAGTGTGGAAACTGAGG GTTGGATCATTCCAAACATGGTCTCAGTGTGGAAACTGAGG < 41bp 0.796403839990641 0.58374618821402 NA NA prediction 0.425315303553242 Functional Loss - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58006878 chr12:58006877 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10100 0 0 1 0 2 ARHGEF25 chr12:58006927 5'GT 58006927 Upstream 51bp 9490 chr2 132290612 132290612 1 + A G rs533306063 132290613 + 132290593 132290633 41 GAAGCCACGCATTTCCCCAAGGTCTCCACCAAGAGCCTCTC GAAGCCACGCATTTCCCCAGGGTCTCCACCAAGAGCCTCTC < 41bp 0.772554800380933 0.559916602900306 NA NA prediction 0.425276394961253 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290613 chr2:132290612 nonsynonymous SNV 0.534 2 20 hm7G_associated_SNPs_10102 0 0 0 0 2 CCDC74A chr2:132290586 3'AG 132290586 Downstream 27bp 9491 chr2 132290612 132290612 1 + A G rs533306063 132290613 + 132290593 132290633 41 GAAGCCACGCATTTCCCCAAGGTCTCCACCAAGAGCCTCTC GAAGCCACGCATTTCCCCAGGGTCTCCACCAAGAGCCTCTC < 41bp 0.772554800380933 0.559916602900306 NA NA prediction 0.425276394961253 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290613 chr2:132290612 nonsynonymous SNV 0.534 2 20 hm7G_associated_SNPs_10102 0 0 0 0 2 CCDC74A chr2:132290642 5'GT 132290642 Upstream 31bp 9492 chr1 16351266 16351266 1 + T G rs142945201 16351267 + 16351247 16351287 41 GCTGTCCCCAGCACACCAGTGGCTGTACAGGGAGATTGGGG GCTGTCCCCAGCACACCAGGGGCTGTACAGGGAGATTGGGG < 41bp 0.712631318211928 0.365135202881036 NA NA prediction 0.425262636423857 Functional Loss - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16351267 chr1:16351266 nonsynonymous SNV 0.912 3 20 hm7G_associated_SNPs_10103 0 0 0 0 1 CLCNKA chr1:16351258 3'AG 16351258 Downstream 9bp 9493 chr7 128843398 128843398 1 + T G STAD 128843399 + 128843379 128843419 41 CTGGCCTGACTTCCTGCGCTGCACTCCTGACCGCTTCCCTG CTGGCCTGACTTCCTGCGCGGCACTCCTGACCGCTTCCCTG < 41bp 0.712626560918955 0.353096571098509 NA NA prediction 0.42525312183791 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128843399 chr7:128843398 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_10104 0 0 1 0 1 SMO chr7:128843430 5'GT 128843430 Upstream 33bp 9494 chr10 105203060 105203060 1 + T C rs142015255 105203061 + 105203041 105203081 41 AAGTCTTTCTCCACCTGGCTGACATCTACGCCAAGTCAGAG AAGTCTTTCTCCACCTGGCCGACATCTACGCCAAGTCAGAG < 41bp 0.719923004631641 0.507320917531326 NA NA prediction 0.425204174200631 Functional Loss - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203061 chr10:105203060 synonymous SNV . 0 20 hm7G_associated_SNPs_10105 0 0 1 0 1 PDCD11 chr10:105203090 5'GT 105203090 Upstream 31bp 9495 chr19 6913709 6913709 1 + T C UCEC 6913710 + 6913690 6913730 41 GCTTAAACAAATATCCACGTGGACTAAATTCACCAAGGAAG GCTTAAACAAATATCCACGCGGACTAAATTCACCAAGGAAG < 41bp 0.723893417183471 0.511298259655006 NA NA prediction 0.425190315056931 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6913710 chr19:6913709 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_10107 0 0 0 0 1 ADGRE1 chr19:6913664 3'AG 6913664 Downstream 46bp 9496 chr10 30739282 30739282 1 + T C COAD 30739283 + 30739263 30739303 41 ATGGCGCAGTCCTGTGGGGTGAAACTGTCCATCTCTTTATG ATGGCGCAGTCCTGTGGGGCGAAACTGTCCATCTCTTTATG < 41bp 0.720697690429865 0.508122393451211 NA NA prediction 0.425150593957308 Functional Loss - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30739283 chr10:30739282 synonymous SNV . 0 20 hm7G_associated_SNPs_10108 0 0 0 0 1 MAP3K8 chr10:30739187 3'AG 30739187 Downstream 96bp 9497 chr16 2578532 2578532 1 + A G UCEC 2578533 + 2578513 2578553 41 TGGGACAGCAGGAAGTGGAAGTGGACGGTCTGACGGCCTAC TGGGACAGCAGGAAGTGGAGGTGGACGGTCTGACGGCCTAC < 41bp 0.734056986707159 0.521491138089026 NA NA prediction 0.425131697236265 Functional Loss - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578533 chr16:2578532 synonymous SNV . 0 20 hm7G_associated_SNPs_10110 0 0 1 0 2 AMDHD2 chr16:2578453 3'AG 2578453 Downstream 80bp 9498 chr16 2578532 2578532 1 + A G UCEC 2578533 + 2578513 2578553 41 TGGGACAGCAGGAAGTGGAAGTGGACGGTCTGACGGCCTAC TGGGACAGCAGGAAGTGGAGGTGGACGGTCTGACGGCCTAC < 41bp 0.734056986707159 0.521491138089026 NA NA prediction 0.425131697236265 Functional Loss - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578533 chr16:2578532 synonymous SNV . 0 20 hm7G_associated_SNPs_10110 0 0 1 0 2 AMDHD2 chr16:2578560 5'GT 2578560 Upstream 29bp 9499 chr3 121634526 121634526 1 + T C UCEC 121634527 + 121634507 121634547 41 GGAGTTCCAGGACTGCTCATGGTAATTGCACTTGGTAAGTG GGAGTTCCAGGACTGCTCACGGTAATTGCACTTGGTAAGTG < 41bp 0.719265601061853 0.506706387779986 NA NA prediction 0.425118426563733 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121634527 chr3:121634526 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_10111 0 0 0 0 2 SLC15A2 chr3:121634463 3'AG 121634463 Downstream 64bp 9500 chr3 121634526 121634526 1 + T C UCEC 121634527 + 121634507 121634547 41 GGAGTTCCAGGACTGCTCATGGTAATTGCACTTGGTAAGTG GGAGTTCCAGGACTGCTCACGGTAATTGCACTTGGTAAGTG < 41bp 0.719265601061853 0.506706387779986 NA NA prediction 0.425118426563733 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121634527 chr3:121634526 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_10111 0 0 0 0 2 SLC15A2 chr3:121634540 5'GT 121634540 Upstream 15bp 9501 chr1 104203099 104203099 1 + T G LUAD 104203100 + 104203080 104203120 41 CTATACTTACCTTCTGGGATGCTAGGTAAAAAACCAAGTTC CTATACTTACCTTCTGGGAGGCTAGGTAAAAAACCAAGTTC < 41bp 0.712556406943491 0.397428195339157 NA NA prediction 0.425112813886982 Functional Loss - AMY1A;AMY1B;AMY1C ENSG00000237763 CDS Human protein_coding chr1:104203100 chr1:104203099 nonsynonymous SNV 0.358 2 20 hm7G_associated_SNPs_10112 0 0 0 0 1 AMY1A;AMY1B;AMY1C chr1:104203104 5'GT 104203104 Upstream 6bp 9502 chr19 3746039 3746039 1 + A G UCEC 3746040 + 3746020 3746060 41 AGGACCGACAGCCCCTCCAAGATCATCAAACTAGACACCGT AGGACCGACAGCCCCTCCAGGATCATCAAACTAGACACCGT < 41bp 0.715904270227532 0.503349289091147 NA NA prediction 0.425109962272771 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746040 chr19:3746039 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10113 0 0 0 0 2 TJP3 chr19:3746009 3'AG 3746009 Downstream 31bp 9503 chr19 3746039 3746039 1 + A G UCEC 3746040 + 3746020 3746060 41 AGGACCGACAGCCCCTCCAAGATCATCAAACTAGACACCGT AGGACCGACAGCCCCTCCAGGATCATCAAACTAGACACCGT < 41bp 0.715904270227532 0.503349289091147 NA NA prediction 0.425109962272771 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746040 chr19:3746039 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10113 0 0 0 0 2 TJP3 chr19:3746079 5'GT 3746079 Upstream 41bp 9504 chr1 15370528 15370528 1 + T C UCEC 15370529 + 15370509 15370549 41 CTGGCCAAGGAGAAGGACCTGCTGGAGCGTGAGAAGTGGGA CTGGCCAAGGAGAAGGACCCGCTGGAGCGTGAGAAGTGGGA < 41bp 0.720516783860479 0.507962460049431 NA NA prediction 0.425108647622097 Functional Loss - KAZN ENSG00000189337 CDS Human protein_coding chr1:15370529 chr1:15370528 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_10114 0 0 1 0 1 KAZN chr1:15370485 3'AG 15370485 Downstream 44bp 9505 chr17 39871806 39871806 1 + A G STAD 39871807 + 39871787 39871827 41 CTTAGGTACAGGGGCCAACAGGGACCTGGAGCTACCCTGGC CTTAGGTACAGGGGCCAACGGGGACCTGGAGCTACCCTGGC < 41bp 0.766343260066815 0.55379642944168 NA NA prediction 0.425093661250269 Functional Loss - GAST ENSG00000184502 CDS Human protein_coding chr17:39871807 chr17:39871806 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_10115 0 0 0 0 1 GAST chr17:39871899 5'GT 39871899 Upstream 94bp 9506 chr8 145736104 145736104 1 + A G UCEC 145736105 + 145736085 145736125 41 ACGCTGGCACAATCTTGAGAGGTGAGGGGCTGGCCTTGAGG ACGCTGGCACAATCTTGAGGGGTGAGGGGCTGGCCTTGAGG < 41bp 0.758169105053805 0.545654214871761 NA NA prediction 0.425029780364089 Functional Loss - MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736105 chr8:145736104 synonymous SNV . 0 20 hm7G_associated_SNPs_10116 0 0 1 0 2 MFSD3 chr8:145736105 5'GT 145736105 Upstream 2bp 9507 chr8 145736104 145736104 1 + A G UCEC 145736105 + 145736085 145736125 41 ACGCTGGCACAATCTTGAGAGGTGAGGGGCTGGCCTTGAGG ACGCTGGCACAATCTTGAGGGGTGAGGGGCTGGCCTTGAGG < 41bp 0.758169105053805 0.545654214871761 NA NA prediction 0.425029780364089 Functional Loss - MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736105 chr8:145736104 synonymous SNV . 0 20 hm7G_associated_SNPs_10116 0 0 1 0 2 MFSD3 chr8:145736177 5'GT 145736177 Upstream 74bp 9508 chr9 77249576 77249576 1 + T G SKCM 77249577 + 77249557 77249597 41 GGAGGAGCCAGCAGAACAATGCTTCTTATTCCTGCCCAAGG GGAGGAGCCAGCAGAACAAGGCTTCTTATTCCTGCCCAAGG < 41bp 0.712483837751296 0.370177684223347 NA NA prediction 0.424967675502592 Functional Loss - RORB ENSG00000198963 CDS Human protein_coding chr9:77249577 chr9:77249576 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10118 0 0 0 0 1 RORB chr9:77249547 3'AG 77249547 Downstream 30bp 9509 chr12 56525074 56525074 1 + T G STAD 56525075 + 56525055 56525095 41 GGAAGTGAAGAAATATTTTTGCAAAGCAGGAGTCAAGGGCA GGAAGTGAAGAAATATTTTGGCAAAGCAGGAGTCAAGGGCA < 41bp 0.910278530782284 0.697833474029625 NA NA prediction 0.424890113505318 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56525075 chr12:56525074 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10120 0 0 1 0 2 ESYT1 chr12:56525028 3'AG 56525028 Downstream 47bp 9510 chr12 56525074 56525074 1 + T G STAD 56525075 + 56525055 56525095 41 GGAAGTGAAGAAATATTTTTGCAAAGCAGGAGTCAAGGGCA GGAAGTGAAGAAATATTTTGGCAAAGCAGGAGTCAAGGGCA < 41bp 0.910278530782284 0.697833474029625 NA NA prediction 0.424890113505318 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56525075 chr12:56525074 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10120 0 0 1 0 2 ESYT1 chr12:56525100 5'GT 56525100 Upstream 27bp 9511 chr19 1047278 1047278 1 + T C COAD 1047279 + 1047259 1047299 41 TCTCCCGCGCCAACCTGGCTGCGGCCTGCGGCGGCCTGGCC TCTCCCGCGCCAACCTGGCCGCGGCCTGCGGCGGCCTGGCC < 41bp 0.715191849337452 0.502753653184223 NA NA prediction 0.424876392306458 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1047279 chr19:1047278 synonymous SNV . 0 20 hm7G_associated_SNPs_10121 0 0 0 0 1 ABCA7 chr19:1047377 5'GT 1047377 Upstream 100bp 9512 chr16 58549792 58549792 1 + A G rs186683751 58549793 + 58549773 58549813 41 CTGAGTCCCAAGGTGAGCGAGCGAGCCGGCGGGCGGAGGAC CTGAGTCCCAAGGTGAGCGGGCGAGCCGGCGGGCGGAGGAC < 41bp 0.712432834549642 0.479147345833331 NA NA prediction 0.424865669099284 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58549793 chr16:58549792 nonsynonymous SNV 0.010 0 20 hm7G_associated_SNPs_10123 0 0 1 0 1 SETD6 chr16:58549695 3'AG 58549695 Downstream 98bp 9513 chr22 24582270 24582270 1 + A G LGG 24582271 + 24582251 24582291 41 ACCGCAGTGGCCGTCCAGGAGGGCAACTCAGATGTGGTGGA ACCGCAGTGGCCGTCCAGGGGGGCAACTCAGATGTGGTGGA < 41bp 0.742873363241446 0.53044286152462 NA NA prediction 0.424861003433652 Functional Loss - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24582271 chr22:24582270 nonsynonymous SNV 0.628 3 20 hm7G_associated_SNPs_10124 0 0 0 0 1 SUSD2 chr22:24582225 3'AG 24582225 Downstream 46bp 9514 chr2 27560373 27560373 1 - A G STAD 27560372 - 27560352 27560392 41 TGAGTGGATTCCTTTAGCCTGGAAGTGGCACTTGTTATCTG TGAGTGGATTCCTTTAGCCCGGAAGTGGCACTTGTTATCTG < 41bp 0.71240491259946 0.496230965199665 NA NA prediction 0.42480982519892 Functional Loss - GTF3C2 ENSG00000115207 CDS Human other chr2:27560372 chr2:27560373 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10127 0 0 1 0 2 GTF3C2 chr2:27560348 5'GT 27560348 Upstream 26bp 9515 chr2 27560373 27560373 1 - A G STAD 27560372 - 27560352 27560392 41 TGAGTGGATTCCTTTAGCCTGGAAGTGGCACTTGTTATCTG TGAGTGGATTCCTTTAGCCCGGAAGTGGCACTTGTTATCTG < 41bp 0.71240491259946 0.496230965199665 NA NA prediction 0.42480982519892 Functional Loss - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27560372 chr2:27560373 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10127 0 0 1 0 2 GTF3C2 chr2:27560425 3'AG 27560425 Downstream 53bp 9516 chr19 51629046 51629046 1 + A G COAD 51629047 + 51629027 51629067 41 ACCCTCATCCCACAGCCCCAGGACCATGGCACCAGCCTCAC ACCCTCATCCCACAGCCCCGGGACCATGGCACCAGCCTCAC < 41bp 0.712399712781973 0.491220579082026 NA NA prediction 0.424799425563947 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51629047 chr19:51629046 nonsynonymous SNV 0.108 2 20 hm7G_associated_SNPs_10128 0 0 0 0 1 SIGLEC9 chr19:51629132 5'GT 51629132 Upstream 87bp 9517 chr17 48628483 48628483 1 + A G SKCM 48628484 + 48628464 48628504 41 CTCAATTCAGGGCTGGAGAAGCTCTTCCAGGCCCGGAAGCA CTCAATTCAGGGCTGGAGAGGCTCTTCCAGGCCCGGAAGCA < 41bp 0.741114502704635 0.528737168221325 NA NA prediction 0.42475466896662 Functional Loss - SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48628484 chr17:48628483 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10130 0 0 1 0 1 SPATA20 chr17:48628551 5'GT 48628551 Upstream 69bp 9518 chr12 122619811 122619811 1 + A G COAD 122619812 + 122619792 122619832 41 AAGCGGTGATCATGACGTCAGGGCCTCTGAAGAGAGAAGGG AAGCGGTGATCATGACGTCGGGGCCTCTGAAGAGAGAAGGG < 41bp 0.734316912300573 0.521940913859633 NA NA prediction 0.424751996881879 Functional Loss - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122619812 chr12:122619811 synonymous SNV . 0 20 hm7G_associated_SNPs_10131 0 0 1 0 1 MLXIP chr12:122619771 3'AG 122619771 Downstream 41bp 9519 chr6 34825549 34825549 1 + T C OV 34825550 + 34825530 34825570 41 AATGGTCTGACATTTACTATGGATCCTGTCAGTTTGCTCTG AATGGTCTGACATTTACTACGGATCCTGTCAGTTTGCTCTG < 41bp 0.712503752039208 0.50013587969071 NA NA prediction 0.424735744696996 Functional Loss - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34825550 chr6:34825549 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_10132 0 0 1 0 1 UHRF1BP1 chr6:34825501 3'AG 34825501 Downstream 49bp 9520 chr8 124812053 124812053 1 + T C UCEC 124812054 + 124812034 124812074 41 CATCTTGGGGTCATGATCCTGGAGTAGTTCCTACCTCAAAT CATCTTGGGGTCATGATCCCGGAGTAGTTCCTACCTCAAAT < 41bp 0.712346826476375 0.496429184754106 NA NA prediction 0.42469365295275 Functional Loss - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124812054 chr8:124812053 synonymous SNV . 0 20 hm7G_associated_SNPs_10133 0 0 0 0 1 FAM91A1 chr8:124812125 5'GT 124812125 Upstream 73bp 9521 chr14 101195290 101195290 1 + A G UCEC 101195291 + 101195271 101195311 41 AGGTGCCAGCCTGGCTGGCAGGGTCCCCTTTGTGACCAGTG AGGTGCCAGCCTGGCTGGCGGGGTCCCCTTTGTGACCAGTG < 41bp 0.766121712873299 0.553788954756604 NA NA prediction 0.424665516233389 Functional Loss - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101195291 chr14:101195290 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_10135 0 0 1 0 1 DLK1 chr14:101195273 3'AG 101195273 Downstream 18bp 9522 chr8 27315890 27315890 1 + T G UCEC 27315891 + 27315871 27315911 41 CTGGCACAGCAGAACGCCGTGACCTCCCTAAGTGAGGAGTG CTGGCACAGCAGAACGCCGGGACCTCCCTAAGTGAGGAGTG < 41bp 0.712331044057336 0.374255011012431 NA NA prediction 0.424662088114672 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27315891 chr8:27315890 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_10136 0 0 0 0 1 PTK2B chr8:27315811 3'AG 27315811 Downstream 80bp 9523 chr12 7355228 7355228 1 + T C LUSC 7355229 + 7355209 7355249 41 GTACATCAGATGCCTGGGTTGACCAGTTCACAAGACCAGTA GTACATCAGATGCCTGGGTCGACCAGTTCACAAGACCAGTA < 41bp 0.730900961677185 0.518571326639864 NA NA prediction 0.424659270074641 Functional Loss - PEX5 ENSG00000139197 CDS Human protein_coding chr12:7355229 chr12:7355228 synonymous SNV . 0 20 hm7G_associated_SNPs_10137 0 0 0 0 1 PEX5 chr12:7355300 5'GT 7355300 Upstream 73bp 9524 chr1 201817700 201817700 1 + T C LIHC 201817701 + 201817681 201817721 41 GAGACTTAAATGCCGTCCATGGAGCCATGCGTGTGCTGACA GAGACTTAAATGCCGTCCACGGAGCCATGCGTGTGCTGACA < 41bp 0.71820538351294 0.50588208214814 NA NA prediction 0.424646602729601 Functional Loss - IPO9 ENSG00000198700 CDS Human protein_coding chr1:201817701 chr1:201817700 synonymous SNV . 0 20 hm7G_associated_SNPs_10138 0 0 1 0 1 IPO9 chr1:201817722 5'GT 201817722 Upstream 23bp 9525 chr17 8167600 8167600 1 + T C rs11078738 8167601 + 8167581 8167621 41 GATGCCCCCCCGACACCCCTGCCAACCCCTGTGGACCTGGA GATGCCCCCCCGACACCCCCGCCAACCCCTGTGGACCTGGA < 41bp 0.712318163076199 0.498616991817411 NA NA prediction 0.424636326152398 Functional Loss - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167601 chr17:8167600 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_10139 0 0 1 0 1 PFAS chr17:8167530 3'AG 8167530 Downstream 71bp 9526 chr13 47262024 47262024 1 + T C UCEC 47262025 + 47262005 47262045 41 GTTCACATATTTAAGTATCTGAGCATACAAGCATGCCAGAT GTTCACATATTTAAGTATCCGAGCATACAAGCATGCCAGAT < 41bp 0.716576494415411 0.504267858502312 NA NA prediction 0.424617271826199 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47262025 chr13:47262024 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_10141 0 0 0 0 2 LRCH1 chr13:47261987 3'AG 47261987 Downstream 38bp 9527 chr13 47262024 47262024 1 + T C UCEC 47262025 + 47262005 47262045 41 GTTCACATATTTAAGTATCTGAGCATACAAGCATGCCAGAT GTTCACATATTTAAGTATCCGAGCATACAAGCATGCCAGAT < 41bp 0.716576494415411 0.504267858502312 NA NA prediction 0.424617271826199 Functional Loss - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47262025 chr13:47262024 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_10141 0 0 0 0 2 LRCH1 chr13:47262114 5'GT 47262114 Upstream 91bp 9528 chr20 32665017 32665017 1 + A G STAD 32665018 + 32664998 32665038 41 ACCCGAGACGACGGCGATGAGGAAGGGCTCCTGACACACAG ACCCGAGACGACGGCGATGGGGAAGGGCTCCTGACACACAG < 41bp 0.736541013325535 0.524236636166001 NA NA prediction 0.424608754319068 Functional Loss - RALY ENSG00000125970 CDS Human protein_coding chr20:32665018 chr20:32665017 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_10142 0 0 1 0 1 RALY chr20:32665051 5'GT 32665051 Upstream 35bp 9529 chrX 100496847 100496847 1 + T C STAD 100496848 + 100496828 100496868 41 GCACTACTCTGAGCCAAGCTGAGGGAGTCCGAGCCACTTGG GCACTACTCTGAGCCAAGCCGAGGGAGTCCGAGCCACTTGG < 41bp 0.727455200536368 0.515159668249083 NA NA prediction 0.424591064574569 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100496848 chrX:100496847 synonymous SNV . 0 20 hm7G_associated_SNPs_10143 0 0 0 0 1 DRP2 chrX:100496925 5'GT 100496925 Upstream 79bp 9530 chr8 143921877 143921877 1 + A G rs61729415 143921878 + 143921858 143921898 41 TCCTCTTTGCCTTACTCCTAGCCATGGAGCTCCCATTGGTG TCCTCTTTGCCTTACTCCTGGCCATGGAGCTCCCATTGGTG < 41bp 0.712256005758931 0.489336728172776 NA NA prediction 0.424512011517863 Functional Loss - GML ENSG00000104499 CDS Human protein_coding chr8:143921878 chr8:143921877 synonymous SNV . 0 20 hm7G_associated_SNPs_10146 0 0 0 0 1 GML chr8:143921832 3'AG 143921832 Downstream 46bp 9531 chr19 11459673 11459673 1 + A G rs565840659 11459674 + 11459654 11459694 41 ACAAGGCTCTGGAGCGTACAGCTCACTGGTCCAGGACTCCA ACAAGGCTCTGGAGCGTACGGCTCACTGGTCCAGGACTCCA < 41bp 0.755250054659353 0.542994539910682 NA NA prediction 0.424511029497341 Functional Loss - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11459674 chr19:11459673 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10147 0 0 0 0 1 CCDC159 chr19:11459642 3'AG 11459642 Downstream 32bp 9532 chr12 56115023 56115023 1 + A G KIRC 56115024 + 56115004 56115044 41 GGCAGTGCTGTGGTTGCTCAGGGACCGGCAGAGCCTGCCCG GGCAGTGCTGTGGTTGCTCGGGGACCGGCAGAGCCTGCCCG < 41bp 0.770326513747263 0.558102521419269 NA NA prediction 0.424447984655989 Functional Loss - RDH5 ENSG00000135437;ENSG00000135437 exonic;splicing Human protein_coding chr12:56115024 chr12:56115023 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_10148 0 0 0 0 2 BLOC1S1-RDH5 chr12:56114932 3'AG 56114932 Downstream 92bp 9533 chr12 56115023 56115023 1 + A G KIRC 56115024 + 56115004 56115044 41 GGCAGTGCTGTGGTTGCTCAGGGACCGGCAGAGCCTGCCCG GGCAGTGCTGTGGTTGCTCGGGGACCGGCAGAGCCTGCCCG < 41bp 0.770326513747263 0.558102521419269 NA NA prediction 0.424447984655989 Functional Loss - RDH5 ENSG00000135437;ENSG00000135437 exonic;splicing Human protein_coding chr12:56115024 chr12:56115023 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_10148 0 0 0 0 2 BLOC1S1-RDH5 chr12:56114937 3'AG 56114937 Downstream 87bp 9534 chr4 42403086 42403086 1 + T G SKCM 42403087 + 42403067 42403107 41 TTCATTGCGTTCATCATCCTGGGCTCTGTAGTGGCTATTTA TTCATTGCGTTCATCATCCGGGGCTCTGTAGTGGCTATTTA < 41bp 0.895510786875088 0.683312371846316 NA NA prediction 0.424396830057544 Functional Loss - SHISA3 ENSG00000178343 CDS Human protein_coding chr4:42403087 chr4:42403086 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_10150 0 0 1 0 1 SHISA3 chr4:42403029 3'AG 42403029 Downstream 58bp 9535 chr17 19564562 19564562 1 + T C UCEC 19564563 + 19564543 19564583 41 CTTTTGGTGGGGAGACTGATGAGGCCACACGCTACATAGGT CTTTTGGTGGGGAGACTGACGAGGCCACACGCTACATAGGT < 41bp 0.719696192325811 0.50757066380161 NA NA prediction 0.424251057048402 Functional Loss - ALDH3A2 ENSG00000072210 CDS Human protein_coding chr17:19564563 chr17:19564562 synonymous SNV . 0 20 hm7G_associated_SNPs_10155 0 0 1 0 1 ALDH3A2 chr17:19564581 5'GT 19564581 Upstream 20bp 9536 chr17 36638270 36638270 1 + T C COAD 36638271 + 36638251 36638291 41 CCCCCACTTCAGATGACAGTGCTGCAGCCCCCAAAACCCCC CCCCCACTTCAGATGACAGCGCTGCAGCCCCCAAAACCCCC < 41bp 0.712125489312557 0.497744545508846 NA NA prediction 0.424250978625113 Functional Loss - ARHGAP23 ENSG00000225485 CDS Human other chr17:36638271 chr17:36638270 synonymous SNV . 0 20 hm7G_associated_SNPs_10156 0 0 0 0 1 ARHGAP23 chr17:36638263 3'AG 36638263 Downstream 8bp 9537 chr11 117061344 117061344 1 + T C COAD 117061345 + 117061325 117061365 41 TCTCTCCCCAACAGGAATGTGGGATCCCCAAACACTTTGGG TCTCTCCCCAACAGGAATGCGGGATCCCCAAACACTTTGGG < 41bp 0.712111411914049 0.499097359071561 NA NA prediction 0.424222823828099 Functional Loss - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117061345 chr11:117061344 synonymous SNV . 0 20 hm7G_associated_SNPs_10158 0 0 1 0 1 SIDT2 chr11:117061339 3'AG 117061339 Downstream 6bp 9538 chr8 99146703 99146703 1 + T C COAD 99146704 + 99146684 99146724 41 CTTTTGTTGATGTCAGGGCTGACGTTTGCAGCAGTTCACTG CTTTTGTTGATGTCAGGGCCGACGTTTGCAGCAGTTCACTG < 41bp 0.73048183933196 0.518371919574836 NA NA prediction 0.424219839514247 Functional Loss - POP1 ENSG00000104356 CDS Human protein_coding chr8:99146704 chr8:99146703 nonsynonymous SNV 0.548 1 20 hm7G_associated_SNPs_10159 0 0 0 0 1 POP1 chr8:99146700 3'AG 99146700 Downstream 4bp 9539 chr1 150527983 150527983 1 + A G SKCM 150527984 + 150527964 150528004 41 CGTCACACTGAAAAGGTCCAGGATGGGACCCTGTGTCAGCC CGTCACACTGAAAAGGTCCGGGATGGGACCCTGTGTCAGCC < 41bp 0.733599095417057 0.521490223525825 NA NA prediction 0.424217743782464 Functional Loss - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150527984 chr1:150527983 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10160 0 0 1 0 2 ADAMTSL4 chr1:150527905 3'AG 150527905 Downstream 79bp 9540 chr1 150527983 150527983 1 + A G SKCM 150527984 + 150527964 150528004 41 CGTCACACTGAAAAGGTCCAGGATGGGACCCTGTGTCAGCC CGTCACACTGAAAAGGTCCGGGATGGGACCCTGTGTCAGCC < 41bp 0.733599095417057 0.521490223525825 NA NA prediction 0.424217743782464 Functional Loss - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150527984 chr1:150527983 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10160 0 0 1 0 2 ADAMTSL4 chr1:150528041 5'GT 150528041 Upstream 59bp 9541 chr8 22475053 22475053 1 + A G COAD 22475054 + 22475034 22475074 41 CCCAGAACTGTTGCTTCTGAGGGATGATGGAGAGGAGGAGT CCCAGAACTGTTGCTTCTGGGGGATGATGGAGAGGAGGAGT < 41bp 0.714523335489588 0.502435830173126 NA NA prediction 0.424175010632924 Functional Loss - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475054 chr8:22475053 nonsynonymous SNV 0.070 4 20 hm7G_associated_SNPs_10162 0 0 1 0 1 CCAR2 chr8:22475077 5'GT 22475077 Upstream 25bp 9542 chr5 178373468 178373468 1 + A G STAD 178373469 + 178373449 178373489 41 CGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGGGTA CGTGATGCTGGAGAACTACGGCAACCTGGTCTCACTGGGTA < 41bp 0.736417534837676 0.524351199573248 NA NA prediction 0.424132670528857 Functional Loss - ZNF454 ENSG00000178187 CDS Human protein_coding chr5:178373469 chr5:178373468 nonsynonymous SNV 0.946 1 20 hm7G_associated_SNPs_10163 0 0 1 0 1 ZNF454 chr5:178373486 5'GT 178373486 Upstream 19bp 9543 chr3 105264113 105264113 1 + T G COAD 105264114 + 105264094 105264134 41 GAGAAGTGACTAGACAGATTGGTGATGCCCTACCCGTGTCA GAGAAGTGACTAGACAGATGGGTGATGCCCTACCCGTGTCA < 41bp 0.712045814805838 0.370699274046732 NA NA prediction 0.424091629611675 Functional Loss - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105264114 chr3:105264113 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10164 0 0 1 0 3 ALCAM chr3:105264033 3'AG 105264033 Downstream 81bp 9544 chr3 105264113 105264113 1 + T G COAD 105264114 + 105264094 105264134 41 GAGAAGTGACTAGACAGATTGGTGATGCCCTACCCGTGTCA GAGAAGTGACTAGACAGATGGGTGATGCCCTACCCGTGTCA < 41bp 0.712045814805838 0.370699274046732 NA NA prediction 0.424091629611675 Functional Loss - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105264114 chr3:105264113 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10164 0 0 1 0 3 ALCAM chr3:105264067 3'AG 105264067 Downstream 47bp 9545 chr3 105264113 105264113 1 + T G COAD 105264114 + 105264094 105264134 41 GAGAAGTGACTAGACAGATTGGTGATGCCCTACCCGTGTCA GAGAAGTGACTAGACAGATGGGTGATGCCCTACCCGTGTCA < 41bp 0.712045814805838 0.370699274046732 NA NA prediction 0.424091629611675 Functional Loss - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105264114 chr3:105264113 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10164 0 0 1 0 3 ALCAM chr3:105264179 5'GT 105264179 Upstream 67bp 9546 chr21 47660749 47660749 1 - A C rs17176933 47660748 - 47660728 47660768 41 TGTTTGTCGAGCAGTCTGCTGCTGGAGAAAGAAGAGAACAA TGTTTGTCGAGCAGTCTGCGGCTGGAGAAAGAAGAGAACAA < 41bp 0.905238454081189 0.6932093241675 NA NA prediction 0.424058259827377 Functional Loss - MCM3AP;MCM3AP-AS1 ENSG00000160294;ENSG00000215424 exonic;splicing Human protein_coding chr21:47660748 chr21:47660749 nonsynonymous SNV 0.589 0 20 hm7G_associated_SNPs_10166 0 0 1 0 1 MCM3AP chr21:47660725 5'GT 47660725 Upstream 25bp 9547 chr22 24123286 24123286 1 + A G COAD 24123287 + 24123267 24123307 41 AATGAGATTGCACCGCTGGAGGTGAGGCCCTGCCTGCCAGT AATGAGATTGCACCGCTGGGGGTGAGGCCCTGCCTGCCAGT < 41bp 0.756521620982031 0.544492709728165 NA NA prediction 0.424057822507734 Functional Loss - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24123287 chr22:24123286 nonsynonymous SNV 0.978 0 20 hm7G_associated_SNPs_10167 0 0 1 0 1 MMP11 chr22:24123287 5'GT 24123287 Upstream 2bp 9548 chr12 13208856 13208856 1 + A G BLCA 13208857 + 13208837 13208877 41 AGATCTGCACAGCACCTGGAGCCGCCACTTGGGCTCCCAGG AGATCTGCACAGCACCTGGGGCCGCCACTTGGGCTCCCAGG < 41bp 0.739668680918102 0.527647033259351 NA NA prediction 0.424043295317502 Functional Loss - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13208857 chr12:13208856 nonsynonymous SNV 0.919 0 20 hm7G_associated_SNPs_10168 0 0 0 0 1 FAM234B chr12:13208880 5'GT 13208880 Upstream 25bp 9549 chr9 109701290 109701290 1 + T C SKCM 109701291 + 109701271 109701311 41 AAGGTCCACGGAAAAGCCCTGACCCTCCCCAGGCCACGGAT AAGGTCCACGGAAAAGCCCCGACCCTCCCCAGGCCACGGAT < 41bp 0.731938558132566 0.519921413860461 NA NA prediction 0.424034288544209 Functional Loss - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109701291 chr9:109701290 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10169 0 0 0 0 1 ZNF462 chr9:109701388 5'GT 109701388 Upstream 99bp 9550 chr9 140136180 140136180 1 + A G LGG 140136181 + 140136161 140136201 41 CGTCCCTTGTAGTTTTGGGAGGTGATCAGCGATGAGCACGG CGTCCCTTGTAGTTTTGGGGGGTGATCAGCGATGAGCACGG < 41bp 0.720419669647009 0.508408368471579 NA NA prediction 0.42402260235086 Functional Loss - TUBB4B ENSG00000188229 CDS Human protein_coding chr9:140136181 chr9:140136180 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_10170 0 0 1 0 1 TUBB4B chr9:140136173 3'AG 140136173 Downstream 8bp 9551 chr2 99155379 99155379 1 + T G KIRC 99155380 + 99155360 99155400 41 CTTCCTGTCGATGAGAGCTTGACGGAGGCGTTAGGAATCCG CTTCCTGTCGATGAGAGCTGGACGGAGGCGTTAGGAATCCG < 41bp 0.712008065422295 0.370979941780179 NA NA prediction 0.424016130844591 Functional Loss - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99155380 chr2:99155379 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_10171 0 0 1 0 2 INPP4A chr2:99155354 3'AG 99155354 Downstream 26bp 9552 chr2 99155379 99155379 1 + T G KIRC 99155380 + 99155360 99155400 41 CTTCCTGTCGATGAGAGCTTGACGGAGGCGTTAGGAATCCG CTTCCTGTCGATGAGAGCTGGACGGAGGCGTTAGGAATCCG < 41bp 0.712008065422295 0.370979941780179 NA NA prediction 0.424016130844591 Functional Loss - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99155380 chr2:99155379 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_10171 0 0 1 0 2 INPP4A chr2:99155444 5'GT 99155444 Upstream 66bp 9553 chr10 89692840 89692840 1 + T G LUSC 89692841 + 89692821 89692861 41 AACCCTTTTGTGAAGATCTTGACCAATGGCTAAGTGAAGAT AACCCTTTTGTGAAGATCTGGACCAATGGCTAAGTGAAGAT < 41bp 0.711986077759396 0.389271479916836 NA NA prediction 0.423972155518792 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89692841 chr10:89692840 synonymous SNV . 0 20 hm7G_associated_SNPs_10174 0 0 0 0 1 PTEN chr10:89692770 3'AG 89692770 Downstream 71bp 9554 chr6 28327719 28327719 1 + T C UCEC 28327720 + 28327700 28327740 41 AGCGGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAG AGCGGGGAGGAGGTGGTGGCGCTATTGGAGTATTTGGAGAG < 41bp 0.71249353993136 0.500522548796817 NA NA prediction 0.423941982269086 Functional Loss - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28327720 chr6:28327719 nonsynonymous SNV 0.925 0 20 hm7G_associated_SNPs_10176 0 0 0 0 1 ZKSCAN3 chr6:28327765 5'GT 28327765 Upstream 47bp 9555 chr7 44091429 44091429 1 + A G SKCM 44091430 + 44091410 44091450 41 CACTGTGACTCTGCTGCAGAGGGTGGCCTGGAGGAGATGGT CACTGTGACTCTGCTGCAGGGGGTGGCCTGGAGGAGATGGT < 41bp 0.728748377238746 0.516799426068964 NA NA prediction 0.423897902339564 Functional Loss - DBNL ENSG00000136279 CDS Human protein_coding chr7:44091430 chr7:44091429 stoploss 0.985 2 20 hm7G_associated_SNPs_10179 0 0 1 0 1 DBNL chr7:44091429 3'AG 44091429 Downstream 1bp 9556 chr17 56270816 56270816 1 + A G LUSC 56270817 + 56270797 56270837 41 CGGTAGCAGCCACCAGGACAGTTGTTCGGGCCGCAGATTAT CGGTAGCAGCCACCAGGACGGTTGTTCGGGCCGCAGATTAT < 41bp 0.711948589777477 0.49746823498223 NA NA prediction 0.423897179554953 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56270817 chr17:56270816 synonymous SNV . 0 20 hm7G_associated_SNPs_10180 0 0 0 0 2 EPX chr17:56270732 3'AG 56270732 Downstream 85bp 9557 chr17 56270816 56270816 1 + A G LUSC 56270817 + 56270797 56270837 41 CGGTAGCAGCCACCAGGACAGTTGTTCGGGCCGCAGATTAT CGGTAGCAGCCACCAGGACGGTTGTTCGGGCCGCAGATTAT < 41bp 0.711948589777477 0.49746823498223 NA NA prediction 0.423897179554953 Functional Loss - EPX ENSG00000121053 CDS Human protein_coding chr17:56270817 chr17:56270816 synonymous SNV . 0 20 hm7G_associated_SNPs_10180 0 0 0 0 2 EPX chr17:56270907 5'GT 56270907 Upstream 92bp 9558 chr12 69109412 69109412 1 + T C OV 69109413 + 69109393 69109433 41 TTTTCTTCTTACAGGACCCTGATGCTCCCATAAGACAGAAA TTTTCTTCTTACAGGACCCCGATGCTCCCATAAGACAGAAA < 41bp 0.72164577499273 0.509702759287945 NA NA prediction 0.42388603140957 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69109413 chr12:69109412 synonymous SNV . 0 20 hm7G_associated_SNPs_10181 0 0 1 0 1 NUP107 chr12:69109407 3'AG 69109407 Downstream 6bp 9559 chr12 106848401 106848401 1 + T G COAD 106848402 + 106848382 106848422 41 AATTTGAGAAACTGCCAGCTGGACAGAATGCAACAGTTGCT AATTTGAGAAACTGCCAGCGGGACAGAATGCAACAGTTGCT < 41bp 0.893780738007008 0.681845444404916 NA NA prediction 0.423870587204183 Functional Loss - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106848402 chr12:106848401 synonymous SNV . 0 20 hm7G_associated_SNPs_10182 0 0 1 0 1 POLR3B chr12:106848489 5'GT 106848489 Upstream 89bp 9560 chr14 104638130 104638130 1 + A G rs147965835 104638131 + 104638111 104638151 41 GAGGCCATGTCCTTCCTGAAGGTGGACCCTCGGAAGAAGCA GAGGCCATGTCCTTCCTGAGGGTGGACCCTCGGAAGAAGCA < 41bp 0.711926200826239 0.48748450354309 NA NA prediction 0.423852401652478 Functional Loss - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638131 chr14:104638130 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10183 0 0 0 0 1 KIF26A chr14:104638060 3'AG 104638060 Downstream 71bp 9561 chr1 11586832 11586832 1 + A G UCEC 11586833 + 11586813 11586853 41 ACCTTGGCCTGTGATGCCAAGCGGGGCTGGAAGTTTGACTT ACCTTGGCCTGTGATGCCAGGCGGGGCTGGAAGTTTGACTT < 41bp 0.723549230114862 0.511625762783487 NA NA prediction 0.423846934662749 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11586833 chr1:11586832 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_10184 0 0 0 0 1 DISP3 chr1:11586892 5'GT 11586892 Upstream 61bp 9562 chr16 22161158 22161158 1 + T G BRCA 22161159 + 22161139 22161179 41 CAGTCATGGCAGGACACGCTGGTGGAGACCACAGATGCAGC CAGTCATGGCAGGACACGCGGGTGGAGACCACAGATGCAGC < 41bp 0.90701495089229 0.695104326448675 NA NA prediction 0.42382124888723 Functional Loss - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22161159 chr16:22161158 nonsynonymous SNV 0.388 4 20 hm7G_associated_SNPs_10185 0 0 0 0 1 VWA3A chr16:22161108 3'AG 22161108 Downstream 51bp 9563 chr1 23233263 23233263 1 + T C rs142173175 23233264 + 23233244 23233284 41 GGCAAGAGAGAGATCTTTGTGGCCATCAAGACGCTCAAGTC GGCAAGAGAGAGATCTTTGCGGCCATCAAGACGCTCAAGTC < 41bp 0.715481284382894 0.503597140761811 NA NA prediction 0.423768287242166 Functional Loss - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23233264 chr1:23233263 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_10186 0 0 0 0 1 EPHB2 chr1:23233203 3'AG 23233203 Downstream 61bp 9564 chr19 41758814 41758814 1 + T C STAD 41758815 + 41758795 41758835 41 GTGGTCATCTTACCTTTCATGAAACATGGAGACCTACACAG GTGGTCATCTTACCTTTCACGAAACATGGAGACCTACACAG < 41bp 0.733520515984935 0.521645907942112 NA NA prediction 0.423749216085646 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41758815 chr19:41758814 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10188 0 0 0 0 2 AXL chr19:41758751 3'AG 41758751 Downstream 64bp 9565 chr19 41758814 41758814 1 + T C STAD 41758815 + 41758795 41758835 41 GTGGTCATCTTACCTTTCATGAAACATGGAGACCTACACAG GTGGTCATCTTACCTTTCACGAAACATGGAGACCTACACAG < 41bp 0.733520515984935 0.521645907942112 NA NA prediction 0.423749216085646 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41758815 chr19:41758814 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10188 0 0 0 0 2 AXL chr19:41758872 5'GT 41758872 Upstream 59bp 9566 chr3 137729276 137729276 1 + T C LIHC 137729277 + 137729257 137729297 41 AGGCCCTATTTCACCATCCTGGGACTTCCAGGTAGGCACCG AGGCCCTATTTCACCATCCCGGGACTTCCAGGTAGGCACCG < 41bp 0.713299525498933 0.501428881529586 NA NA prediction 0.423741287938694 Functional Loss - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137729277 chr3:137729276 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_10189 0 0 0 0 1 CLDN18 chr3:137729287 5'GT 137729287 Upstream 12bp 9567 chr19 38023286 38023286 1 + T C OV 38023287 + 38023267 38023307 41 TCATTCAAAGATGTGGTTGTGGGCTTCACCCAAGAGGAGTG TCATTCAAAGATGTGGTTGCGGGCTTCACCCAAGAGGAGTG < 41bp 0.728513792485189 0.516661596328959 NA NA prediction 0.423704392312461 Functional Loss - ZNF793 ENSG00000188227 CDS Human protein_coding chr19:38023287 chr19:38023286 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_10191 0 0 1 0 2 ZNF793 chr19:38023258 3'AG 38023258 Downstream 29bp 9568 chr19 38023286 38023286 1 + T C OV 38023287 + 38023267 38023307 41 TCATTCAAAGATGTGGTTGTGGGCTTCACCCAAGAGGAGTG TCATTCAAAGATGTGGTTGCGGGCTTCACCCAAGAGGAGTG < 41bp 0.728513792485189 0.516661596328959 NA NA prediction 0.423704392312461 Functional Loss - ZNF793 ENSG00000188227 CDS Human protein_coding chr19:38023287 chr19:38023286 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_10191 0 0 1 0 2 ZNF793 chr19:38023384 5'GT 38023384 Upstream 99bp 9569 chr7 142458509 142458509 1 + T C KIRC 142458510 + 142458490 142458530 41 ATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAA ATTCTGGCTACCACTTCTGCGGTGGCTCCCTCATCAACGAA < 41bp 0.718190519412049 0.506349296678957 NA NA prediction 0.423682445466184 Functional Loss - PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458510 chr7:142458509 synonymous SNV . 0 20 hm7G_associated_SNPs_10193 0 0 0 0 2 PRSS1 chr7:142458480 3'AG 142458480 Downstream 30bp 9570 chr7 142458509 142458509 1 + T C KIRC 142458510 + 142458490 142458530 41 ATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAA ATTCTGGCTACCACTTCTGCGGTGGCTCCCTCATCAACGAA < 41bp 0.718190519412049 0.506349296678957 NA NA prediction 0.423682445466184 Functional Loss - PRSS1 ENSG00000204983 CDS Human protein_coding chr7:142458510 chr7:142458509 synonymous SNV . 0 20 hm7G_associated_SNPs_10193 0 0 0 0 2 PRSS1 chr7:142458565 5'GT 142458565 Upstream 57bp 9571 chr20 62364990 62364990 1 + A G LIHC 62364991 + 62364971 62365011 41 GACTCGCTGCTGCTGAGGGAGGCCGTGGTGGAGGGGGACGG GACTCGCTGCTGCTGAGGGGGGCCGTGGTGGAGGGGGACGG < 41bp 0.751168555557883 0.539354663691208 NA NA prediction 0.42362778373335 Functional Loss - ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62364991 chr20:62364990 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_10194 0 0 1 0 2 ZGPAT chr20:62364939 3'AG 62364939 Downstream 52bp 9572 chr20 62364990 62364990 1 + A G LIHC 62364991 + 62364971 62365011 41 GACTCGCTGCTGCTGAGGGAGGCCGTGGTGGAGGGGGACGG GACTCGCTGCTGCTGAGGGGGGCCGTGGTGGAGGGGGACGG < 41bp 0.751168555557883 0.539354663691208 NA NA prediction 0.42362778373335 Functional Loss - ZGPAT ENSG00000197114;ENSG00000273154 CDS Human other chr20:62364991 chr20:62364990 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_10194 0 0 1 0 2 ZGPAT chr20:62365064 5'GT 62365064 Upstream 75bp 9573 chr16 55361584 55361584 1 + A G READ 55361585 + 55361565 55361605 41 CTCAAGGCCTGGCTCAACGAGCACCGCAAAAACCCCTACCC CTCAAGGCCTGGCTCAACGGGCACCGCAAAAACCCCTACCC < 41bp 0.771294088075221 0.559536102908412 NA NA prediction 0.423515970333618 Functional Loss - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361585 chr16:55361584 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_10196 0 0 0 1 1 IRX6 chr16:55361498 3'AG 55361498 Downstream 87bp 9574 chr2 239256112 239256112 1 + T G rs139202184 239256113 + 239256093 239256133 41 TAGGTGACTCCACCAGTGATGCAGGTGAGGAATGGCCTTAG TAGGTGACTCCACCAGTGAGGCAGGTGAGGAATGGCCTTAG < 41bp 0.894718683683022 0.682972129412736 NA NA prediction 0.423493108540571 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239256113 chr2:239256112 nonsynonymous SNV 0.972 0 20 hm7G_associated_SNPs_10197 0 0 1 0 2 TRAF3IP1 chr2:239256096 3'AG 239256096 Downstream 17bp 9575 chr2 239256112 239256112 1 + T G rs139202184 239256113 + 239256093 239256133 41 TAGGTGACTCCACCAGTGATGCAGGTGAGGAATGGCCTTAG TAGGTGACTCCACCAGTGAGGCAGGTGAGGAATGGCCTTAG < 41bp 0.894718683683022 0.682972129412736 NA NA prediction 0.423493108540571 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239256113 chr2:239256112 nonsynonymous SNV 0.972 0 20 hm7G_associated_SNPs_10197 0 0 1 0 2 TRAF3IP1 chr2:239256116 5'GT 239256116 Upstream 5bp 9576 chr11 2335785 2335785 1 + A G LIHC 2335786 + 2335766 2335806 41 GCTGACCTGTGTCAGGGAGAGGAGGCGGCGAGAGAGGTGAG GCTGACCTGTGTCAGGGAGGGGAGGCGGCGAGAGAGGTGAG < 41bp 0.716911651684792 0.505200368216091 NA NA prediction 0.423422566937403 Functional Loss - TSPAN32 ENSG00000064201 CDS Human protein_coding chr11:2335786 chr11:2335785 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_10198 0 0 0 0 2 TSPAN32 chr11:2335715 3'AG 2335715 Downstream 71bp 9577 chr11 2335785 2335785 1 + A G LIHC 2335786 + 2335766 2335806 41 GCTGACCTGTGTCAGGGAGAGGAGGCGGCGAGAGAGGTGAG GCTGACCTGTGTCAGGGAGGGGAGGCGGCGAGAGAGGTGAG < 41bp 0.716911651684792 0.505200368216091 NA NA prediction 0.423422566937403 Functional Loss - TSPAN32 ENSG00000064201 CDS Human protein_coding chr11:2335786 chr11:2335785 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_10198 0 0 0 0 2 TSPAN32 chr11:2335801 5'GT 2335801 Upstream 17bp 9578 chr1 110031008 110031008 1 + A G BRCA 110031009 + 110030989 110031029 41 AGTGCTTTCCCCACAGGGAAGGAGTGCGACCTCAACAGGCA AGTGCTTTCCCCACAGGGAGGGAGTGCGACCTCAACAGGCA < 41bp 0.733912603553036 0.522266237650607 NA NA prediction 0.423292731804857 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110031009 chr1:110031008 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_10200 0 0 0 0 2 ATXN7L2 chr1:110031005 3'AG 110031005 Downstream 4bp 9579 chr1 110031008 110031008 1 + A G BRCA 110031009 + 110030989 110031029 41 AGTGCTTTCCCCACAGGGAAGGAGTGCGACCTCAACAGGCA AGTGCTTTCCCCACAGGGAGGGAGTGCGACCTCAACAGGCA < 41bp 0.733912603553036 0.522266237650607 NA NA prediction 0.423292731804857 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110031009 chr1:110031008 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_10200 0 0 0 0 2 ATXN7L2 chr1:110031087 5'GT 110031087 Upstream 80bp 9580 chr19 50755933 50755933 1 + T C COAD 50755934 + 50755914 50755954 41 GAGTGGCTGATGAAAAACATGGACCCTCTGAATGACAACGT GAGTGGCTGATGAAAAACACGGACCCTCTGAATGACAACGT < 41bp 0.733618922412548 0.52199341875438 NA NA prediction 0.423251007316337 Functional Loss - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50755934 chr19:50755933 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10202 0 0 0 0 2 MYH14 chr19:50755896 3'AG 50755896 Downstream 38bp 9581 chr19 50755933 50755933 1 + T C COAD 50755934 + 50755914 50755954 41 GAGTGGCTGATGAAAAACATGGACCCTCTGAATGACAACGT GAGTGGCTGATGAAAAACACGGACCCTCTGAATGACAACGT < 41bp 0.733618922412548 0.52199341875438 NA NA prediction 0.423251007316337 Functional Loss - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50755934 chr19:50755933 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10202 0 0 0 0 2 MYH14 chr19:50756010 5'GT 50756010 Upstream 78bp 9582 chr15 77324696 77324696 1 + A G rs145239831 77324697 + 77324677 77324717 41 CATAGACGCCGACATCGACAGTTTCATCCAGGCCAAGAGCA CATAGACGCCGACATCGACGGTTTCATCCAGGCCAAGAGCA < 41bp 0.753382536268919 0.541764881837392 NA NA prediction 0.423235308863053 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77324697 chr15:77324696 nonsynonymous SNV 0.393 0 20 hm7G_associated_SNPs_10203 1 0 0 0 2 PSTPIP1 chr15:77324735 5'GT 77324735 Upstream 40bp 9583 chr15 77324696 77324696 1 + A G rs145239831 77324697 + 77324677 77324717 41 CATAGACGCCGACATCGACAGTTTCATCCAGGCCAAGAGCA CATAGACGCCGACATCGACGGTTTCATCCAGGCCAAGAGCA < 41bp 0.753382536268919 0.541764881837392 NA NA prediction 0.423235308863053 Functional Loss - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77324697 chr15:77324696 nonsynonymous SNV 0.393 0 20 hm7G_associated_SNPs_10203 1 0 0 0 2 PSTPIP1 chr15:77324769 5'GT 77324769 Upstream 74bp 9584 chr19 7986415 7986415 1 + A G UCEC 7986416 + 7986396 7986436 41 GCCGGGAGGCACAGCCCCCAGCCCCCATAGAGGTGAGGCAG GCCGGGAGGCACAGCCCCCGGCCCCCATAGAGGTGAGGCAG < 41bp 0.792248313179206 0.580634957995845 NA NA prediction 0.423226710366722 Functional Loss - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986416 chr19:7986415 synonymous SNV . 0 20 hm7G_associated_SNPs_10204 0 0 0 0 1 SNAPC2 chr19:7986427 5'GT 7986427 Upstream 13bp 9585 chr16 90030940 90030940 1 + A G LIHC 90030941 + 90030921 90030961 41 CGTGCTGTTCCCGTTCGACAGCCACACGTCTGTGTGCGCCG CGTGCTGTTCCCGTTCGACGGCCACACGTCTGTGTGCGCCG < 41bp 0.73025700218053 0.518675362589966 NA NA prediction 0.423163279181128 Functional Loss - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030941 chr16:90030940 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_10206 0 0 0 0 2 DEF8 chr16:90030874 3'AG 90030874 Downstream 67bp 9586 chr16 90030940 90030940 1 + A G LIHC 90030941 + 90030921 90030961 41 CGTGCTGTTCCCGTTCGACAGCCACACGTCTGTGTGCGCCG CGTGCTGTTCCCGTTCGACGGCCACACGTCTGTGTGCGCCG < 41bp 0.73025700218053 0.518675362589966 NA NA prediction 0.423163279181128 Functional Loss - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90030941 chr16:90030940 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_10206 0 0 0 0 2 DEF8 chr16:90030983 5'GT 90030983 Upstream 44bp 9587 chr16 50326687 50326687 1 + T C STAD 50326688 + 50326668 50326708 41 GACCTCTTCACCTACACTGTGAAGTGCATCCAGATCCGCCG GACCTCTTCACCTACACTGCGAAGTGCATCCAGATCCGCCG < 41bp 0.714782014682121 0.503207073955661 NA NA prediction 0.42314988145292 Functional Loss - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50326688 chr16:50326687 nonsynonymous SNV 0.989 0 20 hm7G_associated_SNPs_10208 0 0 1 0 1 ADCY7 chr16:50326736 5'GT 50326736 Upstream 50bp 9588 chr9 5022056 5022056 1 + T C UCEC 5022057 + 5022037 5022077 41 CTTCTATATATCAGAATGGTGATATTTCTGGAAATGCCAAT CTTCTATATATCAGAATGGCGATATTTCTGGAAATGCCAAT < 41bp 0.72848750265905 0.516935874397239 NA NA prediction 0.423103256523622 Functional Loss - JAK2 ENSG00000096968 CDS Human protein_coding chr9:5022057 chr9:5022056 synonymous SNV . 0 20 hm7G_associated_SNPs_10209 0 0 0 0 1 JAK2 chr9:5021963 3'AG 5021963 Downstream 94bp 9589 chr10 72494984 72494984 1 + T C UCEC 72494985 + 72494965 72495005 41 TGGCCCCAGCCCCCAGAGCTGCCTGGGATCAACTACTCAAT TGGCCCCAGCCCCCAGAGCCGCCTGGGATCAACTACTCAAT < 41bp 0.728355294835457 0.516804656162966 NA NA prediction 0.423101277344982 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72494985 chr10:72494984 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_10210 0 0 1 0 2 ADAMTS14 chr10:72494925 3'AG 72494925 Downstream 60bp 9590 chr10 72494984 72494984 1 + T C UCEC 72494985 + 72494965 72495005 41 TGGCCCCAGCCCCCAGAGCTGCCTGGGATCAACTACTCAAT TGGCCCCAGCCCCCAGAGCCGCCTGGGATCAACTACTCAAT < 41bp 0.728355294835457 0.516804656162966 NA NA prediction 0.423101277344982 Functional Loss - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72494985 chr10:72494984 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_10210 0 0 1 0 2 ADAMTS14 chr10:72495057 5'GT 72495057 Upstream 74bp 9591 chr9 132848734 132848734 1 + T C PAAD 132848735 + 132848715 132848755 41 CCTTTTCTGTTCATAATAATGGTGGGGCAGTGTCATTTCAG CCTTTTCTGTTCATAATAACGGTGGGGCAGTGTCATTTCAG < 41bp 0.71201955603725 0.500480536067597 NA NA prediction 0.423078039939307 Functional Loss - GPR107 ENSG00000148358 CDS Human protein_coding chr9:132848735 chr9:132848734 synonymous SNV . 0 20 hm7G_associated_SNPs_10214 0 0 1 2 2 GPR107 chr9:132848699 3'AG 132848699 Downstream 36bp 9592 chr9 132848734 132848734 1 + T C PAAD 132848735 + 132848715 132848755 41 CCTTTTCTGTTCATAATAATGGTGGGGCAGTGTCATTTCAG CCTTTTCTGTTCATAATAACGGTGGGGCAGTGTCATTTCAG < 41bp 0.71201955603725 0.500480536067597 NA NA prediction 0.423078039939307 Functional Loss - GPR107 ENSG00000148358 CDS Human protein_coding chr9:132848735 chr9:132848734 synonymous SNV . 0 20 hm7G_associated_SNPs_10214 0 0 1 2 2 GPR107 chr9:132848755 5'GT 132848755 Upstream 22bp 9593 chr12 95660174 95660174 1 + T G PCPG 95660175 + 95660155 95660195 41 TTCATTAGCTTGCTCGTTATGCTTCCCACTTGGTGGATTGT TTCATTAGCTTGCTCGTTAGGCTTCCCACTTGGTGGATTGT < 41bp 0.893268430404795 0.681741046219642 NA NA prediction 0.423054768370306 Functional Loss - VEZT ENSG00000028203 CDS Human protein_coding chr12:95660175 chr12:95660174 nonsynonymous SNV 0.476 3 20 hm7G_associated_SNPs_10215 0 0 1 0 1 VEZT chr12:95660133 3'AG 95660133 Downstream 42bp 9594 chr20 44672305 44672305 1 + T C UCEC 44672306 + 44672286 44672326 41 TCTAACCGCTCTGGGGACCTGAGGGATGCCCAGAAGTCAAT TCTAACCGCTCTGGGGACCCGAGGGATGCCCAGAAGTCAAT < 41bp 0.737449450530072 0.525933972897124 NA NA prediction 0.423030955265896 Functional Loss - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44672306 chr20:44672305 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10216 0 0 0 0 2 SLC12A5 chr20:44672272 3'AG 44672272 Downstream 34bp 9595 chr20 44672305 44672305 1 + T C UCEC 44672306 + 44672286 44672326 41 TCTAACCGCTCTGGGGACCTGAGGGATGCCCAGAAGTCAAT TCTAACCGCTCTGGGGACCCGAGGGATGCCCAGAAGTCAAT < 41bp 0.737449450530072 0.525933972897124 NA NA prediction 0.423030955265896 Functional Loss - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44672306 chr20:44672305 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10216 0 0 0 0 2 SLC12A5 chr20:44672370 5'GT 44672370 Upstream 66bp 9596 chr18 77804253 77804253 1 + T C UCEC 77804254 + 77804234 77804274 41 CAGACTTTGGACCCCGGGATGAAAGAGACAACTTTGTACAA CAGACTTTGGACCCCGGGACGAAAGAGACAACTTTGTACAA < 41bp 0.725691848732485 0.514183198631954 NA NA prediction 0.423017300201063 Functional Loss - RBFA ENSG00000101546 CDS Human protein_coding chr18:77804254 chr18:77804253 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_10217 0 0 1 0 2 RBFA chr18:77804212 3'AG 77804212 Downstream 42bp 9597 chr18 77804253 77804253 1 + T C UCEC 77804254 + 77804234 77804274 41 CAGACTTTGGACCCCGGGATGAAAGAGACAACTTTGTACAA CAGACTTTGGACCCCGGGACGAAAGAGACAACTTTGTACAA < 41bp 0.725691848732485 0.514183198631954 NA NA prediction 0.423017300201063 Functional Loss - RBFA ENSG00000101546 CDS Human protein_coding chr18:77804254 chr18:77804253 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_10217 0 0 1 0 2 RBFA chr18:77804285 5'GT 77804285 Upstream 33bp 9598 chr17 18137141 18137141 1 + A G rs2290505 18137142 + 18137122 18137162 41 GGTCCTGCTGGTGGCTGCCAGCGACATAGCAGCCCTGGGCA GGTCCTGCTGGTGGCTGCCGGCGACATAGCAGCCCTGGGCA < 41bp 0.778490990372287 0.566989281353641 NA NA prediction 0.423003418037292 Functional Loss - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18137142 chr17:18137141 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_10219 0 0 0 0 1 LLGL1 chr17:18137092 3'AG 18137092 Downstream 50bp 9599 chr11 285201 285201 1 + A G BLCA 285202 + 285182 285222 41 CTGAGCGAGCAGTCACTACAGGAGCTTCAGGCTGTGAAGAG CTGAGCGAGCAGTCACTACGGGAGCTTCAGGCTGTGAAGAG < 41bp 0.718063982964313 0.506568095583949 NA NA prediction 0.422991774760728 Functional Loss - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:285202 chr11:285201 nonsynonymous SNV 0.025 0 20 hm7G_associated_SNPs_10220 0 0 0 0 1 NLRP6 chr11:285166 3'AG 285166 Downstream 36bp 9600 chr12 9009835 9009835 1 + T C THYM 9009836 + 9009816 9009856 41 GGCTGTGGCGAGCAGAACATGGTCTTGTTTGCTCCCATCAT GGCTGTGGCGAGCAGAACACGGTCTTGTTTGCTCCCATCAT < 41bp 0.723964021455804 0.512475238269322 NA NA prediction 0.422977566372963 Functional Loss - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9009836 chr12:9009835 nonsynonymous SNV 0.848 3 20 hm7G_associated_SNPs_10222 0 0 0 0 1 A2ML1 chr12:9009760 3'AG 9009760 Downstream 76bp 9601 chr10 6274866 6274866 1 + A G BLCA 6274867 + 6274847 6274887 41 CCTGAAAACAGAACATGAAAGGCTCCCGGAGCAGCGCTGAC CCTGAAAACAGAACATGAAGGGCTCCCGGAGCAGCGCTGAC < 41bp 0.714066406954435 0.502629074614719 NA NA prediction 0.422874664679432 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6274867 chr10:6274866 synonymous SNV . 0 20 hm7G_associated_SNPs_10223 0 0 1 0 1 PFKFB3 chr10:6274858 3'AG 6274858 Downstream 9bp 9602 chr6 41545765 41545765 1 + A G UCEC 41545766 + 41545746 41545786 41 TCCTGCTGCAGCAGGCCTCAGGCCTGAGCTCCCCAGGGAAC TCCTGCTGCAGCAGGCCTCGGGCCTGAGCTCCCCAGGGAAC < 41bp 0.711434697704645 0.485168959664253 NA NA prediction 0.422869395409289 Functional Loss - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41545766 chr6:41545765 synonymous SNV . 0 20 hm7G_associated_SNPs_10224 0 0 1 0 2 FOXP4 chr6:41545724 3'AG 41545724 Downstream 42bp 9603 chr6 41545765 41545765 1 + A G UCEC 41545766 + 41545746 41545786 41 TCCTGCTGCAGCAGGCCTCAGGCCTGAGCTCCCCAGGGAAC TCCTGCTGCAGCAGGCCTCGGGCCTGAGCTCCCCAGGGAAC < 41bp 0.711434697704645 0.485168959664253 NA NA prediction 0.422869395409289 Functional Loss - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41545766 chr6:41545765 synonymous SNV . 0 20 hm7G_associated_SNPs_10224 0 0 1 0 2 FOXP4 chr6:41545819 5'GT 41545819 Upstream 55bp 9604 chr11 57506485 57506485 1 + T C SKCM 57506486 + 57506466 57506506 41 ATTTTGGGAAGGTGGATGTTGGACGCTATACTGATGTTAGT ATTTTGGGAAGGTGGATGTCGGACGCTATACTGATGTTAGT < 41bp 0.728139037522912 0.516707367469418 NA NA prediction 0.422863340106989 Functional Loss - TMX2 ENSG00000213593 CDS Human protein_coding chr11:57506486 chr11:57506485 synonymous SNV . 0 20 hm7G_associated_SNPs_10225 0 0 1 0 2 TMX2 chr11:57506446 3'AG 57506446 Downstream 40bp 9605 chr11 57506485 57506485 1 + T C SKCM 57506486 + 57506466 57506506 41 ATTTTGGGAAGGTGGATGTTGGACGCTATACTGATGTTAGT ATTTTGGGAAGGTGGATGTCGGACGCTATACTGATGTTAGT < 41bp 0.728139037522912 0.516707367469418 NA NA prediction 0.422863340106989 Functional Loss - TMX2 ENSG00000213593 CDS Human protein_coding chr11:57506486 chr11:57506485 synonymous SNV . 0 20 hm7G_associated_SNPs_10225 0 0 1 0 2 TMX2 chr11:57506511 5'GT 57506511 Upstream 27bp 9606 chr20 4164283 4164283 1 + A G rs1741327 4164284 + 4164264 4164304 41 CCAAGCCCCTGCCGTACACAGAGAGCTCAAAGACAGCGGTA CCAAGCCCCTGCCGTACACGGAGAGCTCAAAGACAGCGGTA < 41bp 0.718327533708027 0.506896836837895 NA NA prediction 0.422861393740263 Functional Loss - SMOX ENSG00000088826 CDS Human protein_coding chr20:4164284 chr20:4164283 synonymous SNV . 0 20 hm7G_associated_SNPs_10226 0 0 0 0 1 SMOX chr20:4164301 5'GT 4164301 Upstream 19bp 9607 chr10 43870979 43870979 1 + T G LIHC 43870980 + 43870960 43871000 41 GCAGCTGAGCGGACTGATCTGCGGAGGGCTCCTGGCCATTG GCAGCTGAGCGGACTGATCGGCGGAGGGCTCCTGGCCATTG < 41bp 0.903133494319401 0.691711700434373 NA NA prediction 0.422843587770057 Functional Loss - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43870980 chr10:43870979 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_10227 0 0 0 0 2 FXYD4 chr10:43870947 3'AG 43870947 Downstream 33bp 9608 chr10 43870979 43870979 1 + T G LIHC 43870980 + 43870960 43871000 41 GCAGCTGAGCGGACTGATCTGCGGAGGGCTCCTGGCCATTG GCAGCTGAGCGGACTGATCGGCGGAGGGCTCCTGGCCATTG < 41bp 0.903133494319401 0.691711700434373 NA NA prediction 0.422843587770057 Functional Loss - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43870980 chr10:43870979 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_10227 0 0 0 0 2 FXYD4 chr10:43871021 5'GT 43871021 Upstream 43bp 9609 chr17 72739332 72739332 1 + A G UCEC 72739333 + 72739313 72739353 41 GCTTATTACAGAGATGCTCAGGGTGAGTCCCTCGCACCCTC GCTTATTACAGAGATGCTCGGGGTGAGTCCCTCGCACCCTC < 41bp 0.720774257208461 0.50936505726407 NA NA prediction 0.422818399888782 Functional Loss - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72739333 chr17:72739332 nonsynonymous SNV 0.966 1 20 hm7G_associated_SNPs_10228 0 0 0 0 1 RAB37 chr17:72739268 3'AG 72739268 Downstream 65bp 9610 chr2 71185249 71185249 1 + T C LIHC 71185250 + 71185230 71185270 41 AGCGGGCAGGTGCTTGAGGTGGCTGGCACCAAGGCGATTGT AGCGGGCAGGTGCTTGAGGCGGCTGGCACCAAGGCGATTGT < 41bp 0.724241040402173 0.512835567037782 NA NA prediction 0.422810946728782 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71185250 chr2:71185249 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_10230 0 0 0 0 2 ATP6V1B1 chr2:71185176 3'AG 71185176 Downstream 74bp 9611 chr2 71185249 71185249 1 + T C LIHC 71185250 + 71185230 71185270 41 AGCGGGCAGGTGCTTGAGGTGGCTGGCACCAAGGCGATTGT AGCGGGCAGGTGCTTGAGGCGGCTGGCACCAAGGCGATTGT < 41bp 0.724241040402173 0.512835567037782 NA NA prediction 0.422810946728782 Functional Loss - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71185250 chr2:71185249 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_10230 0 0 0 0 2 ATP6V1B1 chr2:71185274 5'GT 71185274 Upstream 26bp 9612 chr11 71943951 71943951 1 + T C UCEC 71943952 + 71943932 71943972 41 ACATCAGCAGGAAAGAGTTTGAGCCCCTCCTCAGGGTGGAC ACATCAGCAGGAAAGAGTTCGAGCCCCTCCTCAGGGTGGAC < 41bp 0.728553392853322 0.517180271211927 NA NA prediction 0.42274624328279 Functional Loss - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71943952 chr11:71943951 synonymous SNV . 0 20 hm7G_associated_SNPs_10231 0 0 1 0 2 INPPL1 chr11:71943919 3'AG 71943919 Downstream 33bp 9613 chr11 71943951 71943951 1 + T C UCEC 71943952 + 71943932 71943972 41 ACATCAGCAGGAAAGAGTTTGAGCCCCTCCTCAGGGTGGAC ACATCAGCAGGAAAGAGTTCGAGCCCCTCCTCAGGGTGGAC < 41bp 0.728553392853322 0.517180271211927 NA NA prediction 0.42274624328279 Functional Loss - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71943952 chr11:71943951 synonymous SNV . 0 20 hm7G_associated_SNPs_10231 0 0 1 0 2 INPPL1 chr11:71944018 5'GT 71944018 Upstream 68bp 9614 chrX 100507674 100507674 1 + T C SKCM 100507675 + 100507655 100507695 41 GCCAGCAAAGGCAATAAGCTGCACTACCCCATCATGGAGTA GCCAGCAAAGGCAATAAGCCGCACTACCCCATCATGGAGTA < 41bp 0.722101760488551 0.510740846119404 NA NA prediction 0.422721828738292 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100507675 chrX:100507674 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10233 0 0 0 0 2 DRP2 chrX:100507594 3'AG 100507594 Downstream 81bp 9615 chrX 100507674 100507674 1 + T C SKCM 100507675 + 100507655 100507695 41 GCCAGCAAAGGCAATAAGCTGCACTACCCCATCATGGAGTA GCCAGCAAAGGCAATAAGCCGCACTACCCCATCATGGAGTA < 41bp 0.722101760488551 0.510740846119404 NA NA prediction 0.422721828738292 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100507675 chrX:100507674 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10233 0 0 0 0 2 DRP2 chrX:100507705 5'GT 100507705 Upstream 32bp 9616 chr1 160098612 160098612 1 + T C LUAD 160098613 + 160098593 160098633 41 GGTTCGACAACCAAATCCATGAGGCTGACACCACCGAAGAT GGTTCGACAACCAAATCCACGAGGCTGACACCACCGAAGAT < 41bp 0.721721784658625 0.510390174680662 NA NA prediction 0.422663219955927 Functional Loss - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098613 chr1:160098612 synonymous SNV . 0 20 hm7G_associated_SNPs_10235 0 0 0 0 1 ATP1A2 chr1:160098640 5'GT 160098640 Upstream 29bp 9617 chrX 107310285 107310285 1 + T C LGG 107310286 + 107310266 107310306 41 ATATGCAGCCAGCAGACAGTGGAATTTACATCTGCGATGTT ATATGCAGCCAGCAGACAGCGGAATTTACATCTGCGATGTT < 41bp 0.720180309467581 0.508850109515716 NA NA prediction 0.42266039990373 Functional Loss - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107310286 chrX:107310285 synonymous SNV . 0 20 hm7G_associated_SNPs_10236 0 0 0 0 1 VSIG1 chrX:107310364 5'GT 107310364 Upstream 80bp 9618 chr17 18326301 18326301 1 + A G rs149523378 18326302 + 18326282 18326322 41 AAGGTGGCCACCAACACAGAGGCCCTGCAGAGCGGCAGGAT AAGGTGGCCACCAACACAGGGGCCCTGCAGAGCGGCAGGAT < 41bp 0.719565224373964 0.508241233706664 NA NA prediction 0.4226479813346 Functional Loss - KRT17P5 ENSG00000205266;ENSG00000240279 ncRNA_exonic Human other chr17:18326302 chr17:18326301 . . 0 20 hm7G_associated_SNPs_10237 0 0 0 0 1 KRT17P5 chr17:18326378 5'GT 18326378 Upstream 78bp 9619 chr2 132289349 132289349 1 + A G rs2258687 132289350 + 132289330 132289370 41 ACAACAGCAAGCTGGACAAAGTTCCTGGGGTACAAGGGCAG ACAACAGCAAGCTGGACAAGGTTCCTGGGGTACAAGGGCAG < 41bp 0.76274713495356 0.551426182334731 NA NA prediction 0.422641905237657 Functional Loss - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132289350 chr2:132289349 synonymous SNV . 0 20 hm7G_associated_SNPs_10238 0 0 0 0 1 CCDC74A chr2:132289375 5'GT 132289375 Upstream 27bp 9620 chr1 86959196 86959196 1 + T G LUSC 86959197 + 86959177 86959217 41 GCCTCCCCAAATCCTTCTCTGGGATCCCAGTGGACAGAAGC GCCTCCCCAAATCCTTCTCGGGGATCCCAGTGGACAGAAGC < 41bp 0.711318053240433 0.366772351413617 NA NA prediction 0.422636106480867 Functional Loss - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86959197 chr1:86959196 nonsynonymous SNV 0.916 0 20 hm7G_associated_SNPs_10239 0 0 0 0 1 CLCA1 chr1:86959282 5'GT 86959282 Upstream 87bp 9621 chr11 68853169 68853169 1 + T C OV 68853170 + 68853150 68853190 41 CCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAG CCAATGGCTCGGCGCCCTGCGGGAGCTTCGAGCAGCTGGAG < 41bp 0.713681456168371 0.502371190897223 NA NA prediction 0.422620530542296 Functional Loss - TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68853170 chr11:68853169 synonymous SNV . 0 20 hm7G_associated_SNPs_10240 0 0 0 0 2 TPCN2 chr11:68853139 3'AG 68853139 Downstream 31bp 9622 chr11 68853169 68853169 1 + T C OV 68853170 + 68853150 68853190 41 CCAATGGCTCGGCGCCCTGTGGGAGCTTCGAGCAGCTGGAG CCAATGGCTCGGCGCCCTGCGGGAGCTTCGAGCAGCTGGAG < 41bp 0.713681456168371 0.502371190897223 NA NA prediction 0.422620530542296 Functional Loss - TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68853170 chr11:68853169 synonymous SNV . 0 20 hm7G_associated_SNPs_10240 0 0 0 0 2 TPCN2 chr11:68853220 5'GT 68853220 Upstream 52bp 9623 chr19 16631001 16631001 1 - T C UCEC 16631000 - 16630980 16631020 41 GGTCCAAGTCGTACTCCCCAGGAAGAAGACGCCGGTCACGG GGTCCAAGTCGTACTCCCCGGGAAGAAGACGCCGGTCACGG < 41bp 0.747385473156466 0.536081115774875 NA NA prediction 0.422608714763183 Functional Loss - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631000 chr19:16631001 synonymous SNV . 0 20 hm7G_associated_SNPs_10241 0 0 1 0 2 CHERP chr19:16630960 5'GT 16630960 Upstream 42bp 9624 chr19 16631001 16631001 1 - T C UCEC 16631000 - 16630980 16631020 41 GGTCCAAGTCGTACTCCCCAGGAAGAAGACGCCGGTCACGG GGTCCAAGTCGTACTCCCCGGGAAGAAGACGCCGGTCACGG < 41bp 0.747385473156466 0.536081115774875 NA NA prediction 0.422608714763183 Functional Loss - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631000 chr19:16631001 synonymous SNV . 0 20 hm7G_associated_SNPs_10241 0 0 1 0 2 CHERP chr19:16631076 3'AG 16631076 Downstream 76bp 9625 chr2 174228136 174228136 1 + T G SKCM 174228137 + 174228117 174228157 41 CCGATTCAGAAGATGAAAGTGGAATGAATTTTTTGGAGAAA CCGATTCAGAAGATGAAAGGGGAATGAATTTTTTGGAGAAA < 41bp 0.900564244054123 0.68926348155229 NA NA prediction 0.422601525003666 Functional Loss - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174228137 chr2:174228136 nonsynonymous SNV 0.697 0 20 hm7G_associated_SNPs_10243 0 0 1 0 1 CDCA7 chr2:174228190 5'GT 174228190 Upstream 55bp 9626 chr4 187117222 187117222 1 + T G OV 187117223 + 187117203 187117243 41 AGTTTTTAGAACCATGGCTTGGCCTAGGACTTCTTACAAGG AGTTTTTAGAACCATGGCTGGGCCTAGGACTTCTTACAAGG < 41bp 0.711251768826706 0.369915516465424 NA NA prediction 0.422503537653412 Functional Loss - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187117223 chr4:187117222 synonymous SNV . 0 20 hm7G_associated_SNPs_10244 0 0 1 0 2 CYP4V2 chr4:187117157 3'AG 187117157 Downstream 66bp 9627 chr4 187117222 187117222 1 + T G OV 187117223 + 187117203 187117243 41 AGTTTTTAGAACCATGGCTTGGCCTAGGACTTCTTACAAGG AGTTTTTAGAACCATGGCTGGGCCTAGGACTTCTTACAAGG < 41bp 0.711251768826706 0.369915516465424 NA NA prediction 0.422503537653412 Functional Loss - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187117223 chr4:187117222 synonymous SNV . 0 20 hm7G_associated_SNPs_10244 0 0 1 0 2 CYP4V2 chr4:187117242 5'GT 187117242 Upstream 21bp 9628 chr18 10485503 10485503 1 + A G rs61741632 10485504 + 10485484 10485524 41 GTCGGATCATCTATCGGTCAGACGAGCACCACCCTCCCATC GTCGGATCATCTATCGGTCGGACGAGCACCACCCTCCCATC < 41bp 0.725392677784135 0.514142440570625 NA NA prediction 0.422500474427019 Functional Loss - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10485504 chr18:10485503 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10245 0 0 0 0 1 APCDD1 chr18:10485459 3'AG 10485459 Downstream 45bp 9629 chr8 145693997 145693997 1 + A G LIHC 145693998 + 145693978 145694018 41 GGAGACGGAGCAGAACTGCAGGCGTGAGCTACAGCAGATGC GGAGACGGAGCAGAACTGCGGGCGTGAGCTACAGCAGATGC < 41bp 0.749658832841695 0.53841396512623 NA NA prediction 0.42248973543093 Functional Loss - KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145693998 chr8:145693997 nonsynonymous SNV 0.959 1 20 hm7G_associated_SNPs_10246 0 0 1 0 2 KIFC2 chr8:145693919 3'AG 145693919 Downstream 79bp 9630 chr8 145693997 145693997 1 + A G LIHC 145693998 + 145693978 145694018 41 GGAGACGGAGCAGAACTGCAGGCGTGAGCTACAGCAGATGC GGAGACGGAGCAGAACTGCGGGCGTGAGCTACAGCAGATGC < 41bp 0.749658832841695 0.53841396512623 NA NA prediction 0.42248973543093 Functional Loss - KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145693998 chr8:145693997 nonsynonymous SNV 0.959 1 20 hm7G_associated_SNPs_10246 0 0 1 0 2 KIFC2 chr8:145694033 5'GT 145694033 Upstream 37bp 9631 chr17 78022504 78022504 1 + A G COAD 78022505 + 78022485 78022525 41 GAGAGTGGAGTCCGAGGGGAGTGACGAGGAAGCAGAAGACG GAGAGTGGAGTCCGAGGGGGGTGACGAGGAAGCAGAAGACG < 41bp 0.71122880846122 0.486890867183994 NA NA prediction 0.422457616922441 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022505 chr17:78022504 nonsynonymous SNV 0.103 2 20 hm7G_associated_SNPs_10247 0 0 1 0 1 CCDC40 chr17:78022560 5'GT 78022560 Upstream 57bp 9632 chr4 57319885 57319885 1 + T G UCEC 57319886 + 57319866 57319906 41 TCCTCCCCTCACACCAGACTGGGGAGTTCAGGATGTGTGGT TCCTCCCCTCACACCAGACGGGGGAGTTCAGGATGTGTGGT < 41bp 0.903212526616111 0.691994174004198 NA NA prediction 0.422436705223826 Functional Loss - PAICS ENSG00000128050 CDS Human protein_coding chr4:57319886 chr4:57319885 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_10248 0 0 1 0 1 PAICS chr4:57319927 5'GT 57319927 Upstream 43bp 9633 chr10 72301268 72301268 1 + A G rs79311679 72301269 + 72301249 72301289 41 GTGAGTGTGCCTGATGCCAAGTTCACTAAGGGTGAATTTCA GTGAGTGTGCCTGATGCCAGGTTCACTAAGGGTGAATTTCA < 41bp 0.71631727697815 0.505104136553711 NA NA prediction 0.422426280848878 Functional Loss - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72301269 chr10:72301268 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_10249 0 0 0 0 2 PALD1 chr10:72301219 3'AG 72301219 Downstream 50bp 9634 chr10 72301268 72301268 1 + A G rs79311679 72301269 + 72301249 72301289 41 GTGAGTGTGCCTGATGCCAAGTTCACTAAGGGTGAATTTCA GTGAGTGTGCCTGATGCCAGGTTCACTAAGGGTGAATTTCA < 41bp 0.71631727697815 0.505104136553711 NA NA prediction 0.422426280848878 Functional Loss - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72301269 chr10:72301268 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_10249 0 0 0 0 2 PALD1 chr10:72301290 5'GT 72301290 Upstream 23bp 9635 chr11 45245849 45245849 1 + T G LUAD 45245850 + 45245830 45245870 41 GGTCCCATTCATCTCTCTGTGCTGAGACAGGGCAAAAGTCC GGTCCCATTCATCTCTCTGGGCTGAGACAGGGCAAAAGTCC < 41bp 0.711209622818817 0.359809362092104 NA NA prediction 0.422419245637634 Functional Loss - PRDM11 ENSG00000019485 CDS Human protein_coding chr11:45245850 chr11:45245849 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_10250 0 0 0 0 1 PRDM11 chr11:45245768 3'AG 45245768 Downstream 82bp 9636 chr7 142562346 142562346 1 + T C GBM 142562347 + 142562327 142562367 41 GCAGCTGTGGGCACCTGTGTGGCTCATGCAGAGCCAGAGGA GCAGCTGTGGGCACCTGTGCGGCTCATGCAGAGCCAGAGGA < 41bp 0.713379854914503 0.50218721358066 NA NA prediction 0.422385282667685 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142562347 chr7:142562346 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_10251 0 0 1 0 1 EPHB6 chr7:142562289 3'AG 142562289 Downstream 58bp 9637 chr1 6270330 6270330 1 + T G STAD 6270331 + 6270311 6270351 41 AAGGAGCAGCTCTCTCACTTGGCCACCTTGCTGCCCACCCT AAGGAGCAGCTCTCTCACTGGGCCACCTTGCTGCCCACCCT < 41bp 0.711134247134246 0.345848355154785 NA NA prediction 0.422268494268492 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6270331 chr1:6270330 nonsynonymous SNV 0.464 3 20 hm7G_associated_SNPs_10255 0 0 1 0 2 RNF207 chr1:6270283 3'AG 6270283 Downstream 48bp 9638 chr1 6270330 6270330 1 + T G STAD 6270331 + 6270311 6270351 41 AAGGAGCAGCTCTCTCACTTGGCCACCTTGCTGCCCACCCT AAGGAGCAGCTCTCTCACTGGGCCACCTTGCTGCCCACCCT < 41bp 0.711134247134246 0.345848355154785 NA NA prediction 0.422268494268492 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6270331 chr1:6270330 nonsynonymous SNV 0.464 3 20 hm7G_associated_SNPs_10255 0 0 1 0 2 RNF207 chr1:6270355 5'GT 6270355 Upstream 26bp 9639 chr16 67579615 67579615 1 + A G COAD 67579616 + 67579596 67579636 41 GATCAGGCTGTTGTGCTGAAGGCCCTGAGATTGGCGCCCGA GATCAGGCTGTTGTGCTGAGGGCCCTGAGATTGGCGCCCGA < 41bp 0.728804710791395 0.517677107081893 NA NA prediction 0.422255207419004 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67579616 chr16:67579615 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10257 0 0 1 0 1 RIPOR1 chr16:67579567 3'AG 67579567 Downstream 49bp 9640 chr19 42791869 42791869 1 + T C LGG 42791870 + 42791850 42791890 41 AAGCAGAAGTACCACGACCTGGCCTTCCAGGTAACGCTGTT AAGCAGAAGTACCACGACCCGGCCTTCCAGGTAACGCTGTT < 41bp 0.723844995285054 0.512717991109571 NA NA prediction 0.422254008350966 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42791870 chr19:42791869 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_10258 0 0 1 0 1 CIC chr19:42791879 5'GT 42791879 Upstream 11bp 9641 chr5 135396585 135396585 1 + T C UCEC 135396586 + 135396566 135396606 41 CTGACATCATGGCCACAAATGGCGTGGTCCATGTCATCACC CTGACATCATGGCCACAAACGGCGTGGTCCATGTCATCACC < 41bp 0.711115888553897 0.497203181347201 NA NA prediction 0.422231777107794 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135396586 chr5:135396585 synonymous SNV . 0 20 hm7G_associated_SNPs_10259 0 0 1 0 2 TGFBI chr5:135396523 3'AG 135396523 Downstream 63bp 9642 chr5 135396585 135396585 1 + T C UCEC 135396586 + 135396566 135396606 41 CTGACATCATGGCCACAAATGGCGTGGTCCATGTCATCACC CTGACATCATGGCCACAAACGGCGTGGTCCATGTCATCACC < 41bp 0.711115888553897 0.497203181347201 NA NA prediction 0.422231777107794 Functional Loss - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135396586 chr5:135396585 synonymous SNV . 0 20 hm7G_associated_SNPs_10259 0 0 1 0 2 TGFBI chr5:135396625 5'GT 135396625 Upstream 41bp 9643 chr19 51298101 51298101 1 + A G UCEC 51298102 + 51298082 51298122 41 CCACCTGCCCCTGCCTCTCAGCCTCCCCGGGTGCCCGGCCC CCACCTGCCCCTGCCTCTCGGCCTCCCCGGGTGCCCGGCCC < 41bp 0.7986229148696 0.587509692716286 NA NA prediction 0.422226444306627 Functional Loss - ACPT ENSG00000142513 CDS Human protein_coding chr19:51298102 chr19:51298101 nonsynonymous SNV 0.054 0 20 hm7G_associated_SNPs_10260 0 0 0 0 1 ACPT chr19:51298043 3'AG 51298043 Downstream 59bp 9644 chr2 241530248 241530248 1 + A G UCEC 241530249 + 241530229 241530269 41 CAGGTCATTCCTCCGGGACAGCCGAGCTGGGCCGACCAGGA CAGGTCATTCCTCCGGGACGGCCGAGCTGGGCCGACCAGGA < 41bp 0.735995805071481 0.524883863847379 NA NA prediction 0.422223882448205 Functional Loss - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241530249 chr2:241530248 nonsynonymous SNV 0.969 5 20 hm7G_associated_SNPs_10261 0 0 1 0 1 CAPN10 chr2:241530232 3'AG 241530232 Downstream 17bp 9645 chr2 209309541 209309541 1 + T C UCEC 209309542 + 209309522 209309562 41 CTGGTGGAAGGTCTCTACCTGCATAATCTCATCTTTGTGGC CTGGTGGAAGGTCTCTACCCGCATAATCTCATCTTTGTGGC < 41bp 0.714843277417722 0.503732154632884 NA NA prediction 0.422222245569676 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209309542 chr2:209309541 nonsynonymous SNV 0.917 3 20 hm7G_associated_SNPs_10262 0 0 0 0 2 PTH2R chr2:209309459 3'AG 209309459 Downstream 83bp 9646 chr2 209309541 209309541 1 + T C UCEC 209309542 + 209309522 209309562 41 CTGGTGGAAGGTCTCTACCTGCATAATCTCATCTTTGTGGC CTGGTGGAAGGTCTCTACCCGCATAATCTCATCTTTGTGGC < 41bp 0.714843277417722 0.503732154632884 NA NA prediction 0.422222245569676 Functional Loss - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209309542 chr2:209309541 nonsynonymous SNV 0.917 3 20 hm7G_associated_SNPs_10262 0 0 0 0 2 PTH2R chr2:209309612 5'GT 209309612 Upstream 72bp 9647 chr17 79080554 79080554 1 + A G rs115733273 79080555 + 79080535 79080575 41 GTCCCTACAGCCTGCAGCAAGGGAAGAGCAGCAGCACGGGC GTCCCTACAGCCTGCAGCAGGGGAAGAGCAGCAGCACGGGC < 41bp 0.725214668719141 0.514122050324147 NA NA prediction 0.422185236789989 Functional Loss - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79080555 chr17:79080554 synonymous SNV . 0 20 hm7G_associated_SNPs_10265 0 0 0 0 1 BAIAP2 chr17:79080545 3'AG 79080545 Downstream 10bp 9648 chr17 7919787 7919787 1 + A G rs550992644 7919788 + 7919768 7919808 41 AACCACGGCATCAGCCTGCAGGAGATCCCACCCGAGCGGCG AACCACGGCATCAGCCTGCGGGAGATCCCACCCGAGCGGCG < 41bp 0.711077884246996 0.486961565936604 NA NA prediction 0.422155768493992 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7919788 chr17:7919787 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_10266 0 0 0 0 2 GUCY2D chr17:7919761 3'AG 7919761 Downstream 27bp 9649 chr17 7919787 7919787 1 + A G rs550992644 7919788 + 7919768 7919808 41 AACCACGGCATCAGCCTGCAGGAGATCCCACCCGAGCGGCG AACCACGGCATCAGCCTGCGGGAGATCCCACCCGAGCGGCG < 41bp 0.711077884246996 0.486961565936604 NA NA prediction 0.422155768493992 Functional Loss - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7919788 chr17:7919787 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_10266 0 0 0 0 2 GUCY2D chr17:7919872 5'GT 7919872 Upstream 86bp 9650 chr8 144351572 144351572 1 + A G UCEC 144351573 + 144351553 144351593 41 AGGTCTCAGGGAAGATGGCAGCCCTAGGGGACATTCAGGAG AGGTCTCAGGGAAGATGGCGGCCCTAGGGGACATTCAGGAG < 41bp 0.762767104972614 0.551734170637812 NA NA prediction 0.422065868669604 Functional Loss - GLI4 ENSG00000250571 CDS Human protein_coding chr8:144351573 chr8:144351572 synonymous SNV . 0 20 hm7G_associated_SNPs_10268 0 0 1 0 1 GLI4 chr8:144351530 3'AG 144351530 Downstream 43bp 9651 chr16 76523688 76523688 1 + T C LIHC 76523689 + 76523669 76523709 41 TTCGAGTATGTGGCCAGCATGGAGCAACTTCAGGCCACTAT TTCGAGTATGTGGCCAGCACGGAGCAACTTCAGGCCACTAT < 41bp 0.728604901363655 0.517573988637765 NA NA prediction 0.422061825451781 Functional Loss - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76523689 chr16:76523688 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10269 0 0 0 0 1 CNTNAP4 chr16:76523780 5'GT 76523780 Upstream 93bp 9652 chr17 7124963 7124963 1 + A G HNSC 7124964 + 7124944 7124984 41 ATCCTGCTCTTTGGCACAAAGGCCCAGAAAGAAAAATACCT ATCCTGCTCTTTGGCACAAGGGCCCAGAAAGAAAAATACCT < 41bp 0.725141466121839 0.514129928410506 NA NA prediction 0.422023075422667 Functional Loss - ACADVL ENSG00000072778 CDS Human protein_coding chr17:7124964 chr17:7124963 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_10270 0 0 1 0 1 ACADVL chr17:7125001 5'GT 7125001 Upstream 39bp 9653 chr16 1825324 1825324 1 + A G UCEC 1825325 + 1825305 1825345 41 CCTCTGCTCAGGTCTCGCCAGCACGTTTCCCGGGGGACACA CCTCTGCTCAGGTCTCGCCGGCACGTTTCCCGGGGGACACA < 41bp 0.783430318642209 0.572419975096783 NA NA prediction 0.422020687090853 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825325 chr16:1825324 nonsynonymous SNV 0.858 1 20 hm7G_associated_SNPs_10271 0 0 1 0 3 EME2 chr16:1825240 3'AG 1825240 Downstream 85bp 9654 chr16 1825324 1825324 1 + A G UCEC 1825325 + 1825305 1825345 41 CCTCTGCTCAGGTCTCGCCAGCACGTTTCCCGGGGGACACA CCTCTGCTCAGGTCTCGCCGGCACGTTTCCCGGGGGACACA < 41bp 0.783430318642209 0.572419975096783 NA NA prediction 0.422020687090853 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825325 chr16:1825324 nonsynonymous SNV 0.858 1 20 hm7G_associated_SNPs_10271 0 0 1 0 3 EME2 chr16:1825316 3'AG 1825316 Downstream 9bp 9655 chr16 1825324 1825324 1 + A G UCEC 1825325 + 1825305 1825345 41 CCTCTGCTCAGGTCTCGCCAGCACGTTTCCCGGGGGACACA CCTCTGCTCAGGTCTCGCCGGCACGTTTCCCGGGGGACACA < 41bp 0.783430318642209 0.572419975096783 NA NA prediction 0.422020687090853 Functional Loss - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825325 chr16:1825324 nonsynonymous SNV 0.858 1 20 hm7G_associated_SNPs_10271 0 0 1 0 3 EME2 chr16:1825409 5'GT 1825409 Upstream 86bp 9656 chr16 89921019 89921019 1 + A G BLCA 89921020 + 89921000 89921040 41 CCCTTCGAGATGCTGATGCAGGACATCCGGGCCCGGAACTA CCCTTCGAGATGCTGATGCGGGACATCCGGGCCCGGAACTA < 41bp 0.758103801583685 0.547096023966651 NA NA prediction 0.422015555234067 Functional Loss - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89921020 chr16:89921019 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10273 0 0 1 0 2 SPIRE2 chr16:89921053 5'GT 89921053 Upstream 35bp 9657 chr16 89921019 89921019 1 + A G BLCA 89921020 + 89921000 89921040 41 CCCTTCGAGATGCTGATGCAGGACATCCGGGCCCGGAACTA CCCTTCGAGATGCTGATGCGGGACATCCGGGCCCGGAACTA < 41bp 0.758103801583685 0.547096023966651 NA NA prediction 0.422015555234067 Functional Loss - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89921020 chr16:89921019 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10273 0 0 1 0 2 SPIRE2 chr16:89921059 5'GT 89921059 Upstream 41bp 9658 chr14 24108161 24108161 1 + A G rs150935741 24108162 + 24108142 24108182 41 GAGCAGCACCGGGATAGACAGGAAGGGCGTCCTGGCTAACC GAGCAGCACCGGGATAGACGGGAAGGGCGTCCTGGCTAACC < 41bp 0.710997661766101 0.491592050767674 NA NA prediction 0.421995323532201 Functional Loss - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108162 chr14:24108161 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_10274 0 0 1 0 1 DHRS2 chr14:24108213 5'GT 24108213 Upstream 53bp 9659 chr1 156552138 156552138 1 + A G UCEC 156552139 + 156552119 156552159 41 TGCCAGGAGAGCAGGCCACAGTGCTAAGAAACCTCGGGATG TGCCAGGAGAGCAGGCCACGGTGCTAAGAAACCTCGGGATG < 41bp 0.727380399636464 0.516385076952823 NA NA prediction 0.421990645367281 Functional Loss - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156552139 chr1:156552138 synonymous SNV . 0 20 hm7G_associated_SNPs_10275 0 0 0 0 1 TTC24 chr1:156552226 5'GT 156552226 Upstream 89bp 9660 chr9 27190618 27190618 1 + T C LUSC 27190619 + 27190599 27190639 41 CTGAGCCTTACTTTGGGGATGGACCAATCAAATCCAAGAAG CTGAGCCTTACTTTGGGGACGGACCAATCAAATCCAAGAAG < 41bp 0.730830970658261 0.519851201258013 NA NA prediction 0.421959538800497 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27190619 chr9:27190618 synonymous SNV . 0 20 hm7G_associated_SNPs_10278 0 0 0 0 2 TEK chr9:27190527 3'AG 27190527 Downstream 92bp 9661 chr9 27190618 27190618 1 + T C LUSC 27190619 + 27190599 27190639 41 CTGAGCCTTACTTTGGGGATGGACCAATCAAATCCAAGAAG CTGAGCCTTACTTTGGGGACGGACCAATCAAATCCAAGAAG < 41bp 0.730830970658261 0.519851201258013 NA NA prediction 0.421959538800497 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27190619 chr9:27190618 synonymous SNV . 0 20 hm7G_associated_SNPs_10278 0 0 0 0 2 TEK chr9:27190688 5'GT 27190688 Upstream 71bp 9662 chr17 4439616 4439616 1 + T C UCEC 4439617 + 4439597 4439637 41 CTCTGGGAGTTCCTGAGCCTGGGCTACGCGCTCATGCTCTG CTCTGGGAGTTCCTGAGCCCGGGCTACGCGCTCATGCTCTG < 41bp 0.713760485774665 0.502788504528457 NA NA prediction 0.421943962492416 Functional Loss - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4439617 chr17:4439616 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10280 0 0 0 0 1 SPNS2 chr17:4439558 3'AG 4439558 Downstream 59bp 9663 chr16 67234137 67234137 1 + A G UCEC 67234138 + 67234118 67234158 41 GGGTGGGCTGCAGAGTAACAGTCCTGAAGGGCGCCGGGAAG GGGTGGGCTGCAGAGTAACGGTCCTGAAGGGCGCCGGGAAG < 41bp 0.746781680452606 0.53583937067685 NA NA prediction 0.421884619551511 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234138 chr16:67234137 nonsynonymous SNV 0.637 0 20 hm7G_associated_SNPs_10283 0 0 1 0 1 ELMO3 chr16:67234095 3'AG 67234095 Downstream 43bp 9664 chr15 101555540 101555540 1 + T C LIHC 101555541 + 101555521 101555561 41 CTCCCCCCAGAAATGAAGATGGACTGAAAACGAAGCGTATT CTCCCCCCAGAAATGAAGACGGACTGAAAACGAAGCGTATT < 41bp 0.714137443055264 0.503226187880993 NA NA prediction 0.421822510348543 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101555541 chr15:101555540 synonymous SNV . 0 20 hm7G_associated_SNPs_10284 0 0 0 0 2 LRRK1 chr15:101555531 3'AG 101555531 Downstream 10bp 9665 chr15 101555540 101555540 1 + T C LIHC 101555541 + 101555521 101555561 41 CTCCCCCCAGAAATGAAGATGGACTGAAAACGAAGCGTATT CTCCCCCCAGAAATGAAGACGGACTGAAAACGAAGCGTATT < 41bp 0.714137443055264 0.503226187880993 NA NA prediction 0.421822510348543 Functional Loss - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101555541 chr15:101555540 synonymous SNV . 0 20 hm7G_associated_SNPs_10284 0 0 0 0 2 LRRK1 chr15:101555607 5'GT 101555607 Upstream 68bp 9666 chrX 130220621 130220621 1 + A G BLCA 130220622 + 130220602 130220642 41 GGCTGCTGTCCTTGCTCAAAGCAAGCCTTCTGATGAAGGTC GGCTGCTGTCCTTGCTCAAGGCAAGCCTTCTGATGAAGGTC < 41bp 0.733877150226266 0.522968089237784 NA NA prediction 0.421818121976964 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220622 chrX:130220621 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_10285 0 0 0 0 2 ARHGAP36 chrX:130220533 3'AG 130220533 Downstream 89bp 9667 chrX 130220621 130220621 1 + A G BLCA 130220622 + 130220602 130220642 41 GGCTGCTGTCCTTGCTCAAAGCAAGCCTTCTGATGAAGGTC GGCTGCTGTCCTTGCTCAAGGCAAGCCTTCTGATGAAGGTC < 41bp 0.733877150226266 0.522968089237784 NA NA prediction 0.421818121976964 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220622 chrX:130220621 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_10285 0 0 0 0 2 ARHGAP36 chrX:130220639 5'GT 130220639 Upstream 19bp 9668 chr18 10472057 10472057 1 + A G COAD 10472058 + 10472038 10472078 41 CCCCCTCTGCAGAATGCCAAGGTACCTCAGAGCTCTGTGTT CCCCCTCTGCAGAATGCCAGGGTACCTCAGAGCTCTGTGTT < 41bp 0.71090733477433 0.495929597386415 NA NA prediction 0.42181466954866 Functional Loss - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10472058 chr18:10472057 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_10286 0 0 0 0 1 APCDD1 chr18:10472058 5'GT 10472058 Upstream 2bp 9669 chr10 106034615 106034615 1 + T G rs531362514 106034616 + 106034596 106034636 41 CTGGAGCCTGCGGCAGCGGTGGCGAGCCACAGGGCGGCGAC CTGGAGCCTGCGGCAGCGGGGGCGAGCCACAGGGCGGCGAC < 41bp 0.785328003654976 0.574423146582616 NA NA prediction 0.421809714144721 Functional Loss - GSTO2 ENSG00000065621 UTR5 Human protein_coding chr10:106034616 chr10:106034615 . . 0 20 hm7G_associated_SNPs_10287 0 0 0 0 1 GSTO2 chr10:106034707 5'GT 106034707 Upstream 93bp 9670 chr1 160788031 160788031 1 + T G UCEC 160788032 + 160788012 160788052 41 TGAGAGAAACACAAAGCTTTGGATTGGGTTGTTCCTGATGG TGAGAGAAACACAAAGCTTGGGATTGGGTTGTTCCTGATGG < 41bp 0.710899896724922 0.370789506935281 NA NA prediction 0.421799793449845 Functional Loss - LY9 ENSG00000122224 CDS Human protein_coding chr1:160788032 chr1:160788031 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_10288 0 0 0 0 2 LY9 chr1:160788008 3'AG 160788008 Downstream 24bp 9671 chr1 160788031 160788031 1 + T G UCEC 160788032 + 160788012 160788052 41 TGAGAGAAACACAAAGCTTTGGATTGGGTTGTTCCTGATGG TGAGAGAAACACAAAGCTTGGGATTGGGTTGTTCCTGATGG < 41bp 0.710899896724922 0.370789506935281 NA NA prediction 0.421799793449845 Functional Loss - LY9 ENSG00000122224 CDS Human protein_coding chr1:160788032 chr1:160788031 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_10288 0 0 0 0 2 LY9 chr1:160788109 5'GT 160788109 Upstream 79bp 9672 chr22 40059815 40059815 1 + T C OV 40059816 + 40059796 40059836 41 AACTGCATCACCATCGCCCTGGAGCGGCCTCAGATCGAGGC AACTGCATCACCATCGCCCCGGAGCGGCCTCAGATCGAGGC < 41bp 0.72167307657112 0.510835287971777 NA NA prediction 0.421675577198687 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40059816 chr22:40059815 nonsynonymous SNV 0.990 5 20 hm7G_associated_SNPs_10289 0 0 0 0 2 CACNA1I chr22:40059723 3'AG 40059723 Downstream 93bp 9673 chr22 40059815 40059815 1 + T C OV 40059816 + 40059796 40059836 41 AACTGCATCACCATCGCCCTGGAGCGGCCTCAGATCGAGGC AACTGCATCACCATCGCCCCGGAGCGGCCTCAGATCGAGGC < 41bp 0.72167307657112 0.510835287971777 NA NA prediction 0.421675577198687 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40059816 chr22:40059815 nonsynonymous SNV 0.990 5 20 hm7G_associated_SNPs_10289 0 0 0 0 2 CACNA1I chr22:40059846 5'GT 40059846 Upstream 32bp 9674 chr3 52813061 52813061 1 + A G UCEC 52813062 + 52813042 52813082 41 AGAGAATGCCGGCCTTGTCAGGTGAGTTCTGGGCCTGCTGG AGAGAATGCCGGCCTTGTCGGGTGAGTTCTGGGCCTGCTGG < 41bp 0.723605358513952 0.512767846225821 NA NA prediction 0.421675024576263 Functional Loss - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52813062 chr3:52813061 nonsynonymous SNV 0.961 4 20 hm7G_associated_SNPs_10290 0 0 0 0 1 ITIH1 chr3:52813062 5'GT 52813062 Upstream 2bp 9675 chr9 127561679 127561679 1 + A G STAD 127561680 + 127561660 127561700 41 ATCATGCTGGGCATCAAGAAGGAGCTGTCCCGCCTGGGCCT ATCATGCTGGGCATCAAGAGGGAGCTGTCCCGCCTGGGCCT < 41bp 0.735153310072068 0.524321082593571 NA NA prediction 0.421664454956995 Functional Loss - OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127561680 chr9:127561679 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_10291 0 0 0 0 1 OLFML2A chr9:127561770 5'GT 127561770 Upstream 92bp 9676 chr18 60243796 60243796 1 + T C UCEC 60243797 + 60243777 60243817 41 CCCCCTTCTAATGATACGTTGGATTCTGCAGACTGAAACGA CCCCCTTCTAATGATACGTCGGATTCTGCAGACTGAAACGA < 41bp 0.732632251586559 0.52180006624142 NA NA prediction 0.421664370690277 Functional Loss - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60243797 chr18:60243796 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10292 0 0 1 0 2 ZCCHC2 chr18:60243745 3'AG 60243745 Downstream 52bp 9677 chr18 60243796 60243796 1 + T C UCEC 60243797 + 60243777 60243817 41 CCCCCTTCTAATGATACGTTGGATTCTGCAGACTGAAACGA CCCCCTTCTAATGATACGTCGGATTCTGCAGACTGAAACGA < 41bp 0.732632251586559 0.52180006624142 NA NA prediction 0.421664370690277 Functional Loss - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60243797 chr18:60243796 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10292 0 0 1 0 2 ZCCHC2 chr18:60243885 5'GT 60243885 Upstream 90bp 9678 chr1 156849796 156849796 1 + A G rs34271945 156849797 + 156849777 156849817 41 TCCGCCCGTGGCAGGTGGGAGGCCGCACCATGCTGCCCATT TCCGCCCGTGGCAGGTGGGGGGCCGCACCATGCTGCCCATT < 41bp 0.759618929704691 0.548789029370474 NA NA prediction 0.421659800668433 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156849797 chr1:156849796 synonymous SNV . 0 20 hm7G_associated_SNPs_10293 1 0 1 0 1 NTRK1 chr1:156849791 3'AG 156849791 Downstream 6bp 9679 chr2 211473256 211473256 1 + T C UCEC 211473257 + 211473237 211473277 41 ATGGAACATCTAGCCGAATTGGTAGCTCTATGAAAAGTGTA ATGGAACATCTAGCCGAATCGGTAGCTCTATGAAAAGTGTA < 41bp 0.719542909954145 0.508737326614536 NA NA prediction 0.421611166679218 Functional Loss - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211473257 chr2:211473256 synonymous SNV . 0 20 hm7G_associated_SNPs_10295 0 0 1 0 1 CPS1 chr2:211473283 5'GT 211473283 Upstream 28bp 9680 chr20 47851526 47851526 1 + A G COAD 47851527 + 47851507 47851547 41 CTGTTCACGCAAACCAAGAAGCAGGCCCACCGCATGCACAT CTGTTCACGCAAACCAAGAGGCAGGCCCACCGCATGCACAT < 41bp 0.717525532355505 0.506735091668412 NA NA prediction 0.421580881374187 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47851527 chr20:47851526 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10296 0 0 1 0 2 DDX27 chr20:47851472 3'AG 47851472 Downstream 55bp 9681 chr20 47851526 47851526 1 + A G COAD 47851527 + 47851507 47851547 41 CTGTTCACGCAAACCAAGAAGCAGGCCCACCGCATGCACAT CTGTTCACGCAAACCAAGAGGCAGGCCCACCGCATGCACAT < 41bp 0.717525532355505 0.506735091668412 NA NA prediction 0.421580881374187 Functional Loss - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47851527 chr20:47851526 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10296 0 0 1 0 2 DDX27 chr20:47851625 5'GT 47851625 Upstream 100bp 9682 chr10 135371416 135371416 1 - A C rs147617180 135371415 - 135371395 135371435 41 GCTCTCCCTACAGAGACCCTGAGGATCCTCCGGCTGCATTG GCTCTCCCTACAGAGACCCGGAGGATCCTCCGGCTGCATTG < 41bp 0.786572213147673 0.57578495506049 NA NA prediction 0.421574516174365 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135371415 chr10:135371416 nonsynonymous SNV 0.643 3 20 hm7G_associated_SNPs_10297 0 0 0 0 2 SYCE1 chr10:135371368 5'GT 135371368 Upstream 49bp 9683 chr10 135371416 135371416 1 - A C rs147617180 135371415 - 135371395 135371435 41 GCTCTCCCTACAGAGACCCTGAGGATCCTCCGGCTGCATTG GCTCTCCCTACAGAGACCCGGAGGATCCTCCGGCTGCATTG < 41bp 0.786572213147673 0.57578495506049 NA NA prediction 0.421574516174365 Functional Loss - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135371415 chr10:135371416 nonsynonymous SNV 0.643 3 20 hm7G_associated_SNPs_10297 0 0 0 0 2 SYCE1 chr10:135371422 3'AG 135371422 Downstream 7bp 9684 chr9 131286028 131286028 1 + A G COAD 131286029 + 131286009 131286049 41 CAGCTGGATGCCTCTGAGCAGCACAAAGCCCTGCTTAAGGT CAGCTGGATGCCTCTGAGCGGCACAAAGCCCTGCTTAAGGT < 41bp 0.712022217174875 0.501237346828931 NA NA prediction 0.421569740691887 Functional Loss - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131286029 chr9:131286028 nonsynonymous SNV 0.064 0 20 hm7G_associated_SNPs_10298 0 0 1 0 1 GLE1 chr9:131286125 5'GT 131286125 Upstream 98bp 9685 chr17 80426645 80426645 1 + T G BLCA 80426646 + 80426626 80426666 41 ATTTCTCCTTCTAGAAATGTGATACCTCAAAGCACAAAGTG ATTTCTCCTTCTAGAAATGGGATACCTCAAAGCACAAAGTG < 41bp 0.8298458366469 0.619080560962447 NA NA prediction 0.421530551368906 Functional Loss - NARF ENSG00000141562 CDS Human protein_coding chr17:80426646 chr17:80426645 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_10300 0 0 1 4 1 NARF chr17:80426640 3'AG 80426640 Downstream 6bp 9686 chr14 24620765 24620765 1 + T C UCEC 24620766 + 24620746 24620786 41 CATTGTTCCAGCACGGAGGTGATGTGTCACGGGCCCTGACT CATTGTTCCAGCACGGAGGCGATGTGTCACGGGCCCTGACT < 41bp 0.72149770568326 0.510741464245026 NA NA prediction 0.421512482876468 Functional Loss - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24620766 chr14:24620765 synonymous SNV . 0 20 hm7G_associated_SNPs_10301 0 0 1 0 1 RNF31 chr14:24620694 3'AG 24620694 Downstream 72bp 9687 chr22 17578707 17578707 1 + T C LUSC 17578708 + 17578688 17578728 41 TACCTGCCTGGATGACAGCTGGATTCACCCTCGAAACCTGA TACCTGCCTGGATGACAGCCGGATTCACCCTCGAAACCTGA < 41bp 0.735749912293585 0.524996877829666 NA NA prediction 0.421506068927838 Functional Loss - IL17RA ENSG00000177663 CDS Human protein_coding chr22:17578708 chr22:17578707 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10302 0 0 1 0 1 IL17RA chr22:17578687 3'AG 17578687 Downstream 21bp 9688 chr17 61628127 61628127 1 + A G LUAD 61628128 + 61628108 61628148 41 TGGAGTGTGCGGCCCGATAAGCGCTTTCGCTTGGCGCTGGG TGGAGTGTGCGGCCCGATAGGCGCTTTCGCTTGGCGCTGGG < 41bp 0.719819171999422 0.509069310537169 NA NA prediction 0.421499722924506 Functional Loss - DCAF7 ENSG00000136485 CDS Human protein_coding chr17:61628128 chr17:61628127 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10303 0 0 1 0 1 DCAF7 chr17:61628176 5'GT 61628176 Upstream 50bp 9689 chr19 36595509 36595509 1 + A G UCEC 36595510 + 36595490 36595530 41 CCCATCTCCCCTTGAGCTGAGCAGGGTGGGGAACATCTTGC CCCATCTCCCCTTGAGCTGGGCAGGGTGGGGAACATCTTGC < 41bp 0.726630681652182 0.515896487576455 NA NA prediction 0.421468388151456 Functional Loss - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36595510 chr19:36595509 nonsynonymous SNV 0.106 0 20 hm7G_associated_SNPs_10305 0 0 1 0 2 WDR62 chr19:36595420 3'AG 36595420 Downstream 90bp 9690 chr19 36595509 36595509 1 + A G UCEC 36595510 + 36595490 36595530 41 CCCATCTCCCCTTGAGCTGAGCAGGGTGGGGAACATCTTGC CCCATCTCCCCTTGAGCTGGGCAGGGTGGGGAACATCTTGC < 41bp 0.726630681652182 0.515896487576455 NA NA prediction 0.421468388151456 Functional Loss - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36595510 chr19:36595509 nonsynonymous SNV 0.106 0 20 hm7G_associated_SNPs_10305 0 0 1 0 2 WDR62 chr19:36595577 5'GT 36595577 Upstream 69bp 9691 chr21 45838339 45838339 1 + T C LIHC 45838340 + 45838320 45838360 41 AAGAACGAGGAGGCGGCCCTGCTATCCTGGGAGATCTACCT AAGAACGAGGAGGCGGCCCCGCTATCCTGGGAGATCTACCT < 41bp 0.710721223548448 0.499717199336806 NA NA prediction 0.421442447096897 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45838340 chr21:45838339 nonsynonymous SNV 0.292 3 20 hm7G_associated_SNPs_10307 0 0 0 0 2 TRPM2 chr21:45838306 3'AG 45838306 Downstream 34bp 9692 chr21 45838339 45838339 1 + T C LIHC 45838340 + 45838320 45838360 41 AAGAACGAGGAGGCGGCCCTGCTATCCTGGGAGATCTACCT AAGAACGAGGAGGCGGCCCCGCTATCCTGGGAGATCTACCT < 41bp 0.710721223548448 0.499717199336806 NA NA prediction 0.421442447096897 Functional Loss - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45838340 chr21:45838339 nonsynonymous SNV 0.292 3 20 hm7G_associated_SNPs_10307 0 0 0 0 2 TRPM2 chr21:45838438 5'GT 45838438 Upstream 100bp 9693 chr19 4210358 4210358 1 + A G LIHC 4210359 + 4210339 4210379 41 GGAACAGCACAAGGAACGGAGGCAGCAGGAGGTTAGGAGGC GGAACAGCACAAGGAACGGGGGCAGCAGGAGGTTAGGAGGC < 41bp 0.773907951289219 0.563195294943758 NA NA prediction 0.421425312690922 Functional Loss - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4210359 chr19:4210358 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_10309 0 0 0 0 2 ANKRD24 chr19:4210262 3'AG 4210262 Downstream 97bp 9694 chr19 4210358 4210358 1 + A G LIHC 4210359 + 4210339 4210379 41 GGAACAGCACAAGGAACGGAGGCAGCAGGAGGTTAGGAGGC GGAACAGCACAAGGAACGGGGGCAGCAGGAGGTTAGGAGGC < 41bp 0.773907951289219 0.563195294943758 NA NA prediction 0.421425312690922 Functional Loss - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4210359 chr19:4210358 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_10309 0 0 0 0 2 ANKRD24 chr19:4210369 5'GT 4210369 Upstream 12bp 9695 chr22 45218289 45218289 1 + T C COAD 45218290 + 45218270 45218310 41 GTCATCTATTTCAACTACCTGAGTGAGCTCCACGAACACCT GTCATCTATTTCAACTACCCGAGTGAGCTCCACGAACACCT < 41bp 0.710708767561255 0.496150188439897 NA NA prediction 0.42141753512251 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45218290 chr22:45218289 nonsynonymous SNV 0.017 3 20 hm7G_associated_SNPs_10310 0 0 1 2 2 ARHGAP8;PRR5-ARHGAP8 chr22:45218251 3'AG 45218251 Downstream 39bp 9696 chr22 45218289 45218289 1 + T C COAD 45218290 + 45218270 45218310 41 GTCATCTATTTCAACTACCTGAGTGAGCTCCACGAACACCT GTCATCTATTTCAACTACCCGAGTGAGCTCCACGAACACCT < 41bp 0.710708767561255 0.496150188439897 NA NA prediction 0.42141753512251 Functional Loss - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45218290 chr22:45218289 nonsynonymous SNV 0.017 3 20 hm7G_associated_SNPs_10310 0 0 1 2 2 ARHGAP8;PRR5-ARHGAP8 chr22:45218349 5'GT 45218349 Upstream 61bp 9697 chr8 17407860 17407860 1 + T C HNSC 17407861 + 17407841 17407881 41 TATGGGGCTGGTGGCTTTATGCCTTATGGCTTTACGGGAAC TATGGGGCTGGTGGCTTTACGCCTTATGGCTTTACGGGAAC < 41bp 0.731520834252844 0.520815872033213 NA NA prediction 0.421409924439262 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17407861 chr8:17407860 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10311 0 0 1 0 2 SLC7A2 chr8:17407810 3'AG 17407810 Downstream 51bp 9698 chr8 17407860 17407860 1 + T C HNSC 17407861 + 17407841 17407881 41 TATGGGGCTGGTGGCTTTATGCCTTATGGCTTTACGGGAAC TATGGGGCTGGTGGCTTTACGCCTTATGGCTTTACGGGAAC < 41bp 0.731520834252844 0.520815872033213 NA NA prediction 0.421409924439262 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17407861 chr8:17407860 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10311 0 0 1 0 2 SLC7A2 chr8:17407943 5'GT 17407943 Upstream 84bp 9699 chr9 140100709 140100709 1 + T C UCEC 140100710 + 140100690 140100730 41 CTGATTAACGAGCCCCTGGTGATATTTGTTTGTGCAACTAC CTGATTAACGAGCCCCTGGCGATATTTGTTTGTGCAACTAC < 41bp 0.724118905799341 0.513416585451877 NA NA prediction 0.421404640694929 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100710 chr9:140100709 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_10312 0 0 1 0 2 NDOR1 chr9:140100684 3'AG 140100684 Downstream 26bp 9700 chr9 140100709 140100709 1 + T C UCEC 140100710 + 140100690 140100730 41 CTGATTAACGAGCCCCTGGTGATATTTGTTTGTGCAACTAC CTGATTAACGAGCCCCTGGCGATATTTGTTTGTGCAACTAC < 41bp 0.724118905799341 0.513416585451877 NA NA prediction 0.421404640694929 Functional Loss - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100710 chr9:140100709 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_10312 0 0 1 0 2 NDOR1 chr9:140100761 5'GT 140100761 Upstream 53bp 9701 chr17 14248416 14248416 1 + A G UCEC 14248417 + 14248397 14248437 41 AGTTACTTCGTCACGCGGGAGGCCCCTGCGCGCATCTCGGC AGTTACTTCGTCACGCGGGGGGCCCCTGCGCGCATCTCGGC < 41bp 0.710701505416258 0.496740604514194 NA NA prediction 0.421403010832516 Functional Loss - HS3ST3B1 ENSG00000125430 CDS Human protein_coding chr17:14248417 chr17:14248416 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10313 0 0 0 0 1 HS3ST3B1 chr17:14248345 3'AG 14248345 Downstream 72bp 9702 chr5 1221274 1221274 1 + A G SKCM 1221275 + 1221255 1221295 41 GGCCTTGGCAGGTTCAATAAGGACATCGAGTTCATGATCGG GGCCTTGGCAGGTTCAATAGGGACATCGAGTTCATGATCGG < 41bp 0.729894945727126 0.519213553875836 NA NA prediction 0.421362783702579 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1221275 chr5:1221274 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_10315 0 0 1 0 1 SLC6A19 chr5:1221266 3'AG 1221266 Downstream 9bp 9703 chr11 61908975 61908975 1 + A G UCEC 61908976 + 61908956 61908996 41 CTTGTCTCCTCCACAGTGCAGCTTCGTCGTAAGTAAAGCCT CTTGTCTCCTCCACAGTGCGGCTTCGTCGTAAGTAAAGCCT < 41bp 0.728394748915306 0.51771404417613 NA NA prediction 0.421361409478352 Functional Loss - INCENP ENSG00000149503 CDS Human protein_coding chr11:61908976 chr11:61908975 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_10316 0 0 1 0 2 INCENP chr11:61908972 3'AG 61908972 Downstream 4bp 9704 chr11 61908975 61908975 1 + A G UCEC 61908976 + 61908956 61908996 41 CTTGTCTCCTCCACAGTGCAGCTTCGTCGTAAGTAAAGCCT CTTGTCTCCTCCACAGTGCGGCTTCGTCGTAAGTAAAGCCT < 41bp 0.728394748915306 0.51771404417613 NA NA prediction 0.421361409478352 Functional Loss - INCENP ENSG00000149503 CDS Human protein_coding chr11:61908976 chr11:61908975 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_10316 0 0 1 0 2 INCENP chr11:61908983 5'GT 61908983 Upstream 9bp 9705 chr11 124743250 124743250 1 + A G UCEC 124743251 + 124743231 124743271 41 GCGTGGCCAAGAGTTCCACAGGGGAAGCCACATGGAGCGGC GCGTGGCCAAGAGTTCCACGGGGGAAGCCACATGGAGCGGC < 41bp 0.710680682411118 0.486067707782092 NA NA prediction 0.421361364822236 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743251 chr11:124743250 synonymous SNV . 0 20 hm7G_associated_SNPs_10317 0 0 0 0 2 ROBO3 chr11:124743206 3'AG 124743206 Downstream 45bp 9706 chr11 124743250 124743250 1 + A G UCEC 124743251 + 124743231 124743271 41 GCGTGGCCAAGAGTTCCACAGGGGAAGCCACATGGAGCGGC GCGTGGCCAAGAGTTCCACGGGGGAAGCCACATGGAGCGGC < 41bp 0.710680682411118 0.486067707782092 NA NA prediction 0.421361364822236 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743251 chr11:124743250 synonymous SNV . 0 20 hm7G_associated_SNPs_10317 0 0 0 0 2 ROBO3 chr11:124743287 5'GT 124743287 Upstream 38bp 9707 chr11 66326794 66326794 1 + A G ACC 66326795 + 66326775 66326815 41 CGGCGCCACGAGGCCTTTGAGAGCGACCTGGCGGCGCACCA CGGCGCCACGAGGCCTTTGGGAGCGACCTGGCGGCGCACCA < 41bp 0.710635105557896 0.495946327165184 NA NA prediction 0.421270211115793 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66326795 chr11:66326794 unknown 1.000 2 20 hm7G_associated_SNPs_10322 0 0 0 0 2 ACTN3 chr11:66326707 3'AG 66326707 Downstream 88bp 9708 chr11 66326794 66326794 1 + A G ACC 66326795 + 66326775 66326815 41 CGGCGCCACGAGGCCTTTGAGAGCGACCTGGCGGCGCACCA CGGCGCCACGAGGCCTTTGGGAGCGACCTGGCGGCGCACCA < 41bp 0.710635105557896 0.495946327165184 NA NA prediction 0.421270211115793 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66326795 chr11:66326794 unknown 1.000 2 20 hm7G_associated_SNPs_10322 0 0 0 0 2 ACTN3 chr11:66326857 5'GT 66326857 Upstream 64bp 9709 chr16 202930 202930 1 + A G LUSC 202931 + 202911 202951 41 GTCTCTGACCAAGACTGAGAGGACCATCATTGTGTCCATGT GTCTCTGACCAAGACTGAGGGGACCATCATTGTGTCCATGT < 41bp 0.748805465684331 0.53817390583374 NA NA prediction 0.421263119701182 Functional Loss - HBZ ENSG00000130656 CDS Human protein_coding chr16:202931 chr16:202930 nonsynonymous SNV 0.072 3 20 hm7G_associated_SNPs_10323 0 0 1 0 1 HBZ chr16:203003 5'GT 203003 Upstream 74bp 9710 chr1 151204204 151204204 1 + A G UCEC 151204205 + 151204185 151204225 41 CATTACCCACACTGTGGGGAGCCTGAGTACCAAACCAGAGC CATTACCCACACTGTGGGGGGCCTGAGTACCAAACCAGAGC < 41bp 0.712937611510349 0.5023117631869 NA NA prediction 0.421251696646897 Functional Loss - PIP5K1A ENSG00000143398 CDS Human protein_coding chr1:151204205 chr1:151204204 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_10324 0 0 1 0 2 PIP5K1A chr1:151204147 3'AG 151204147 Downstream 58bp 9711 chr1 151204204 151204204 1 + A G UCEC 151204205 + 151204185 151204225 41 CATTACCCACACTGTGGGGAGCCTGAGTACCAAACCAGAGC CATTACCCACACTGTGGGGGGCCTGAGTACCAAACCAGAGC < 41bp 0.712937611510349 0.5023117631869 NA NA prediction 0.421251696646897 Functional Loss - PIP5K1A ENSG00000143398 CDS Human protein_coding chr1:151204205 chr1:151204204 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_10324 0 0 1 0 2 PIP5K1A chr1:151204277 5'GT 151204277 Upstream 74bp 9712 chr1 28176655 28176655 1 + A G STAD 28176656 + 28176636 28176676 41 CCTGGAGGAATCAGGGAGCAGGCGCATGCAGAACTTTGCCT CCTGGAGGAATCAGGGAGCGGGCGCATGCAGAACTTTGCCT < 41bp 0.712303811650616 0.50169482249074 NA NA prediction 0.421217978319751 Functional Loss - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28176656 chr1:28176655 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10325 0 0 1 1 1 PPP1R8 chr1:28176604 3'AG 28176604 Downstream 52bp 9713 chrX 48542340 48542340 1 + A G LGG 48542341 + 48542321 48542361 41 CTCCAGGACCACGAGAACCAGCGACTCTTTGAGATGCTTGG CTCCAGGACCACGAGAACCGGCGACTCTTTGAGATGCTTGG < 41bp 0.717431926217977 0.506847030274 NA NA prediction 0.421169791887954 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48542341 chrX:48542340 nonsynonymous SNV 0.901 2 20 hm7G_associated_SNPs_10326 0 0 0 0 1 WAS chrX:48542374 5'GT 48542374 Upstream 35bp 9714 chr7 107323748 107323748 1 + T C UCEC 107323749 + 107323729 107323769 41 TGGCAGTTAAGGAATTAAATGATCGGTTTAGACACAAAATC TGGCAGTTAAGGAATTAAACGATCGGTTTAGACACAAAATC < 41bp 0.727014937023969 0.516444410123958 NA NA prediction 0.421141053800021 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107323749 chr7:107323748 synonymous SNV . 0 20 hm7G_associated_SNPs_10328 0 0 0 0 1 SLC26A4 chr7:107323799 5'GT 107323799 Upstream 52bp 9715 chr3 155652807 155652807 1 + T C rs139844459 155652808 + 155652788 155652828 41 CTTTACGCCAAGCTGATTTTGAGGCCCATAACATTCTCAGG CTTTACGCCAAGCTGATTTCGAGGCCCATAACATTCTCAGG < 41bp 0.711180967944821 0.500614657832478 NA NA prediction 0.421132620224684 Functional Loss - GMPS ENSG00000163655 CDS Human protein_coding chr3:155652808 chr3:155652807 synonymous SNV . 0 20 hm7G_associated_SNPs_10329 0 0 0 0 1 GMPS chr3:155652835 5'GT 155652835 Upstream 29bp 9716 chr19 45368910 45368910 1 + A G rs34777587 45368911 + 45368891 45368931 41 GAGGGATGACCTGGCTCAGAGTCATAGGTGAGCAGGGTAAG GAGGGATGACCTGGCTCAGGGTCATAGGTGAGCAGGGTAAG < 41bp 0.754807303397399 0.544254008068019 NA NA prediction 0.42110659065876 Functional Loss - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45368911 chr19:45368910 synonymous SNV . 0 20 hm7G_associated_SNPs_10330 0 0 1 0 1 NECTIN2 chr19:45368917 5'GT 45368917 Upstream 8bp 9717 chr17 33984665 33984665 1 + T C COAD 33984666 + 33984646 33984686 41 ACTACCACTGCAACGAACCTGGAACAGCCTCAGGTTATCCC ACTACCACTGCAACGAACCCGGAACAGCCTCAGGTTATCCC < 41bp 0.723857878042594 0.513316573520711 NA NA prediction 0.421082609043765 Functional Loss - AP2B1 ENSG00000006125 CDS Human protein_coding chr17:33984666 chr17:33984665 nonsynonymous SNV 0.972 1 20 hm7G_associated_SNPs_10331 0 0 1 0 1 AP2B1 chr17:33984618 3'AG 33984618 Downstream 48bp 9718 chr1 205028794 205028794 1 + T C UCEC 205028795 + 205028775 205028815 41 GCAGCAGGTCACCCTGGAGTGCTTCGCCTTTGGGAAGTGAG GCAGCAGGTCACCCTGGAGCGCTTCGCCTTTGGGAAGTGAG < 41bp 0.733735836431477 0.523207831386089 NA NA prediction 0.421056010090776 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205028795 chr1:205028794 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10332 0 0 0 0 2 CNTN2 chr1:205028711 3'AG 205028711 Downstream 84bp 9719 chr1 205028794 205028794 1 + T C UCEC 205028795 + 205028775 205028815 41 GCAGCAGGTCACCCTGGAGTGCTTCGCCTTTGGGAAGTGAG GCAGCAGGTCACCCTGGAGCGCTTCGCCTTTGGGAAGTGAG < 41bp 0.733735836431477 0.523207831386089 NA NA prediction 0.421056010090776 Functional Loss - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205028795 chr1:205028794 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10332 0 0 0 0 2 CNTN2 chr1:205028810 5'GT 205028810 Upstream 17bp 9720 chr6 107097038 107097038 1 + T C rs556497476 107097039 + 107097019 107097059 41 TAACTGGAGGAAGCTCAGGTGGGAGTGCAGCTGCTGTATCG TAACTGGAGGAAGCTCAGGCGGGAGTGCAGCTGCTGTATCG < 41bp 0.722675896639965 0.51215710664412 NA NA prediction 0.421037579991691 Functional Loss - QRSL1 ENSG00000130348 CDS Human protein_coding chr6:107097039 chr6:107097038 synonymous SNV . 0 20 hm7G_associated_SNPs_10333 0 0 1 0 1 QRSL1 chr6:107097076 5'GT 107097076 Upstream 39bp 9721 chr8 27308567 27308567 1 + T C UCEC 27308568 + 27308548 27308588 41 CTTCCTCTGCAGGACCCCATGGTTTATATGAATGATAAGTC CTTCCTCTGCAGGACCCCACGGTTTATATGAATGATAAGTC < 41bp 0.723165461288603 0.512656602030958 NA NA prediction 0.421017718515291 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27308568 chr8:27308567 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_10334 0 0 0 0 2 PTK2B chr8:27308560 3'AG 27308560 Downstream 8bp 9722 chr8 27308567 27308567 1 + T C UCEC 27308568 + 27308548 27308588 41 CTTCCTCTGCAGGACCCCATGGTTTATATGAATGATAAGTC CTTCCTCTGCAGGACCCCACGGTTTATATGAATGATAAGTC < 41bp 0.723165461288603 0.512656602030958 NA NA prediction 0.421017718515291 Functional Loss - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27308568 chr8:27308567 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_10334 0 0 0 0 2 PTK2B chr8:27308595 5'GT 27308595 Upstream 29bp 9723 chr7 31126111 31126111 1 + T C COAD 31126112 + 31126092 31126132 41 TGGTGGAGACCTTCTTCCCTGAAAGGAGATACTTCTACTGG TGGTGGAGACCTTCTTCCCCGAAAGGAGATACTTCTACTGG < 41bp 0.727227851486556 0.516720952119315 NA NA prediction 0.421013798734482 Functional Loss - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31126112 chr7:31126111 synonymous SNV . 0 20 hm7G_associated_SNPs_10335 0 0 0 0 1 ADCYAP1R1 chr7:31126151 5'GT 31126151 Upstream 41bp 9724 chr16 56901065 56901065 1 + A G rs2304479 56901066 + 56901046 56901086 41 GGCTGGTGGAGGGCGAGGCAGGCACCAGCAGCGAGAAGAAC GGCTGGTGGAGGGCGAGGCGGGCACCAGCAGCGAGAAGAAC < 41bp 0.767940548548035 0.557452342541555 NA NA prediction 0.420976412012959 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56901066 chr16:56901065 synonymous SNV . 0 20 hm7G_associated_SNPs_10336 2 0 0 0 3 SLC12A3 chr16:56900982 3'AG 56900982 Downstream 84bp 9725 chr16 56901065 56901065 1 + A G rs2304479 56901066 + 56901046 56901086 41 GGCTGGTGGAGGGCGAGGCAGGCACCAGCAGCGAGAAGAAC GGCTGGTGGAGGGCGAGGCGGGCACCAGCAGCGAGAAGAAC < 41bp 0.767940548548035 0.557452342541555 NA NA prediction 0.420976412012959 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56901066 chr16:56901065 synonymous SNV . 0 20 hm7G_associated_SNPs_10336 2 0 0 0 3 SLC12A3 chr16:56900985 3'AG 56900985 Downstream 81bp 9726 chr16 56901065 56901065 1 + A G rs2304479 56901066 + 56901046 56901086 41 GGCTGGTGGAGGGCGAGGCAGGCACCAGCAGCGAGAAGAAC GGCTGGTGGAGGGCGAGGCGGGCACCAGCAGCGAGAAGAAC < 41bp 0.767940548548035 0.557452342541555 NA NA prediction 0.420976412012959 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56901066 chr16:56901065 synonymous SNV . 0 20 hm7G_associated_SNPs_10336 2 0 0 0 3 SLC12A3 chr16:56901128 5'GT 56901128 Upstream 64bp 9727 chr3 11072889 11072889 1 + T C HNSC 11072890 + 11072870 11072910 41 TTTATGTCTTCAAACTCTTTGACTACTACTCTGCCAGTGGC TTTATGTCTTCAAACTCTTCGACTACTACTCTGCCAGTGGC < 41bp 0.712815481208342 0.502331816003725 NA NA prediction 0.420967330409234 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11072890 chr3:11072889 synonymous SNV . 0 20 hm7G_associated_SNPs_10337 0 0 1 0 2 SLC6A1 chr3:11072863 3'AG 11072863 Downstream 27bp 9728 chr3 11072889 11072889 1 + T C HNSC 11072890 + 11072870 11072910 41 TTTATGTCTTCAAACTCTTTGACTACTACTCTGCCAGTGGC TTTATGTCTTCAAACTCTTCGACTACTACTCTGCCAGTGGC < 41bp 0.712815481208342 0.502331816003725 NA NA prediction 0.420967330409234 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11072890 chr3:11072889 synonymous SNV . 0 20 hm7G_associated_SNPs_10337 0 0 1 0 2 SLC6A1 chr3:11072965 5'GT 11072965 Upstream 77bp 9729 chr22 25016486 25016486 1 + T C CESC 25016487 + 25016467 25016507 41 CGAGCAGCAGCCTGTCTTGTGGTATGTCTGTGGGTGCGGCC CGAGCAGCAGCCTGTCTTGCGGTATGTCTGTGGGTGCGGCC < 41bp 0.715769031608386 0.505285968429336 NA NA prediction 0.4209661263581 Functional Loss - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25016487 chr22:25016486 nonsynonymous SNV 0.290 0 20 hm7G_associated_SNPs_10338 0 0 0 0 1 GGT1 chr22:25016487 5'GT 25016487 Upstream 2bp 9730 chr3 184019718 184019718 1 + T C STAD 184019719 + 184019699 184019739 41 GAGCCTCTGCTCACTCTGGTGAAGGAAATCGTCCCCTATAA GAGCCTCTGCTCACTCTGGCGAAGGAAATCGTCCCCTATAA < 41bp 0.710481551531781 0.489358870143072 NA NA prediction 0.420963103063562 Functional Loss - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184019719 chr3:184019718 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_10339 0 0 1 0 2 PSMD2 chr3:184019635 3'AG 184019635 Downstream 84bp 9731 chr3 184019718 184019718 1 + T C STAD 184019719 + 184019699 184019739 41 GAGCCTCTGCTCACTCTGGTGAAGGAAATCGTCCCCTATAA GAGCCTCTGCTCACTCTGGCGAAGGAAATCGTCCCCTATAA < 41bp 0.710481551531781 0.489358870143072 NA NA prediction 0.420963103063562 Functional Loss - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184019719 chr3:184019718 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_10339 0 0 1 0 2 PSMD2 chr3:184019646 3'AG 184019646 Downstream 73bp 9732 chr11 94554905 94554905 1 + T C UCEC 94554906 + 94554886 94554926 41 GTGGAGCGAGCCCAGCAAATGGTGGAGATATTAACAGAGGA GTGGAGCGAGCCCAGCAAACGGTGGAGATATTAACAGAGGA < 41bp 0.742517490196576 0.532050423631684 NA NA prediction 0.420934133129782 Functional Loss - AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94554906 chr11:94554905 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_10340 0 0 1 0 1 AMOTL1 chr11:94554987 5'GT 94554987 Upstream 83bp 9733 chr16 2086386 2086386 1 + A G STAD 2086387 + 2086367 2086407 41 CACCTGCGAAAGGGACCTCAGGGCTATGGGTTCAACCTGCA CACCTGCGAAAGGGACCTCGGGGCTATGGGTTCAACCTGCA < 41bp 0.779191819850717 0.568729756594706 NA NA prediction 0.42092412651202 Functional Loss - SLC9A3R2 ENSG00000065054 CDS Human protein_coding chr16:2086387 chr16:2086386 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_10341 0 0 0 0 1 SLC9A3R2 chr16:2086325 3'AG 2086325 Downstream 62bp 9734 chr6 35053685 35053685 1 + A G COAD 35053686 + 35053666 35053706 41 TCTTCCAAACCGGTGCCTAAGCCTCGGGTCGGCGTGAGGAA TCTTCCAAACCGGTGCCTAGGCCTCGGGTCGGCGTGAGGAA < 41bp 0.714597676956033 0.504142712237076 NA NA prediction 0.420909929437913 Functional Loss - ANKS1A ENSG00000064999 CDS Human protein_coding chr6:35053686 chr6:35053685 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10342 0 0 1 0 1 ANKS1A chr6:35053713 5'GT 35053713 Upstream 29bp 9735 chr11 120099669 120099669 1 + T G COAD 120099670 + 120099650 120099690 41 GGGGGACCACGGGAAGCCCTGCGTCTGCCGCTATGGCCTGA GGGGGACCACGGGAAGCCCGGCGTCTGCCGCTATGGCCTGA < 41bp 0.903970197765189 0.693520705263356 NA NA prediction 0.420898985003665 Functional Loss - OAF ENSG00000184232 CDS Human protein_coding chr11:120099670 chr11:120099669 nonsynonymous SNV 0.104 4 20 hm7G_associated_SNPs_10343 0 0 0 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 93bp 9736 chr17 26667447 26667447 1 + T G UCEC 26667448 + 26667428 26667468 41 AAATCAAGGAATTGATGGCTGAAGCAAAGTATTACCTCATC AAATCAAGGAATTGATGGCGGAAGCAAAGTATTACCTCATC < 41bp 0.904448246731589 0.694015108182988 NA NA prediction 0.420866277097203 Functional Loss - TNFAIP1 ENSG00000109079 CDS Human protein_coding chr17:26667448 chr17:26667447 synonymous SNV . 0 20 hm7G_associated_SNPs_10344 0 0 1 0 1 TNFAIP1 chr17:26667504 5'GT 26667504 Upstream 58bp 9737 chr2 24236264 24236264 1 + T G SKCM 24236265 + 24236245 24236285 41 TTTTACCTGCAGCTTTTCCTGCTTGATATAGCACAGGTAAG TTTTACCTGCAGCTTTTCCGGCTTGATATAGCACAGGTAAG < 41bp 0.903437166072764 0.693014955232809 NA NA prediction 0.42084442167991 Functional Loss - MFSD2B ENSG00000205639 CDS Human protein_coding chr2:24236265 chr2:24236264 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_10345 0 0 0 0 1 MFSD2B chr2:24236280 5'GT 24236280 Upstream 17bp 9738 chr3 38035909 38035909 1 + A G GBM 38035910 + 38035890 38035930 41 GTGCTGCACCGCGAGGCGCAGGGCCACGAGTCCGACTGCTT GTGCTGCACCGCGAGGCGCGGGGCCACGAGTCCGACTGCTT < 41bp 0.760024590775681 0.549621084851292 NA NA prediction 0.420807011848779 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38035910 chr3:38035909 nonsynonymous SNV 0.586 4 20 hm7G_associated_SNPs_10346 0 0 0 0 1 VILL chr3:38035957 5'GT 38035957 Upstream 49bp 9739 chr16 31141880 31141880 1 + A G rs1549294 31141881 + 31141861 31141901 41 ACTGGTCCTGGGTGCTGCTAGAGATCCTGCGGGACTTCCGG ACTGGTCCTGGGTGCTGCTGGAGATCCTGCGGGACTTCCGG < 41bp 0.728527480954002 0.518131723195498 NA NA prediction 0.420791515517008 Functional Loss - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31141881 chr16:31141880 synonymous SNV . 0 20 hm7G_associated_SNPs_10347 0 0 1 6 1 KAT8 chr16:31141927 5'GT 31141927 Upstream 48bp 9740 chr19 971952 971952 1 + A G COAD 971953 + 971933 971973 41 AGGCGGCGGCGGCGGCGGCAGCAGCAGCAACGCAGGCGGCC AGGCGGCGGCGGCGGCGGCGGCAGCAGCAACGCAGGCGGCC < 41bp 0.768438200225876 0.558068885735478 NA NA prediction 0.420738628980796 Functional Loss - ARID3A ENSG00000116017 CDS Human protein_coding chr19:971953 chr19:971952 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10348 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 75bp 9741 chr10 26830524 26830524 1 + T G GBM 26830525 + 26830505 26830545 41 TTTCAGACATCTCGAGATCTGGCGTGTTTTATACAGTTTGA TTTCAGACATCTCGAGATCGGGCGTGTTTTATACAGTTTGA < 41bp 0.710351881236838 0.375286615759959 NA NA prediction 0.420703762473676 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26830525 chr10:26830524 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_10349 0 0 0 0 2 APBB1IP chr10:26830511 3'AG 26830511 Downstream 14bp 9742 chr10 26830524 26830524 1 + T G GBM 26830525 + 26830505 26830545 41 TTTCAGACATCTCGAGATCTGGCGTGTTTTATACAGTTTGA TTTCAGACATCTCGAGATCGGGCGTGTTTTATACAGTTTGA < 41bp 0.710351881236838 0.375286615759959 NA NA prediction 0.420703762473676 Functional Loss - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26830525 chr10:26830524 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_10349 0 0 0 0 2 APBB1IP chr10:26830621 5'GT 26830621 Upstream 98bp 9743 chr19 48917267 48917267 1 + T C STAD 48917268 + 48917248 48917288 41 GTACTTCATGAACATCACGTGGGATAACCGGGATTACTCCT GTACTTCATGAACATCACGCGGGATAACCGGGATTACTCCT < 41bp 0.714235167336851 0.50390965055824 NA NA prediction 0.420651033557222 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917268 chr19:48917267 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_10351 0 0 1 0 2 GRIN2D chr19:48917248 3'AG 48917248 Downstream 20bp 9744 chr19 48917267 48917267 1 + T C STAD 48917268 + 48917248 48917288 41 GTACTTCATGAACATCACGTGGGATAACCGGGATTACTCCT GTACTTCATGAACATCACGCGGGATAACCGGGATTACTCCT < 41bp 0.714235167336851 0.50390965055824 NA NA prediction 0.420651033557222 Functional Loss - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917268 chr19:48917267 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_10351 0 0 1 0 2 GRIN2D chr19:48917362 5'GT 48917362 Upstream 96bp 9745 chr20 47582460 47582460 1 + T C PAAD 47582461 + 47582441 47582481 41 GAGAGAGTTCTAGGTGAACTGGAGTGCCAGGAATGTGCTAT GAGAGAGTTCTAGGTGAACCGGAGTGCCAGGAATGTGCTAT < 41bp 0.711134463455691 0.500812376921831 NA NA prediction 0.42064417306772 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47582461 chr20:47582460 nonsynonymous SNV 0.553 0 20 hm7G_associated_SNPs_10352 0 0 1 0 1 ARFGEF2 chr20:47582409 3'AG 47582409 Downstream 52bp 9746 chr7 128843421 128843421 1 + A G rs114834844 128843422 + 128843402 128843442 41 CTCCTGACCGCTTCCCTGAAGGCTGCACGGTGAGTGCTCTG CTCCTGACCGCTTCCCTGAGGGCTGCACGGTGAGTGCTCTG < 41bp 0.710317102072757 0.48940926787597 NA NA prediction 0.420634204145514 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128843422 chr7:128843421 synonymous SNV . 0 20 hm7G_associated_SNPs_10353 0 0 1 0 1 SMO chr7:128843430 5'GT 128843430 Upstream 10bp 9747 chr10 101117306 101117306 1 + T G SKCM 101117307 + 101117287 101117327 41 TTGTCCAGCGGGTGAATAATGAGGGAGAAGGGGACCCTTTC TTGTCCAGCGGGTGAATAAGGAGGGAGAAGGGGACCCTTTC < 41bp 0.902366469891549 0.692056777401034 NA NA prediction 0.42061938498103 Functional Loss - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101117307 chr10:101117306 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_10354 0 0 1 0 1 CNNM1 chr10:101117269 3'AG 101117269 Downstream 38bp 9748 chr22 47054198 47054198 1 + A G ESCA 47054199 + 47054179 47054219 41 AAGGTGCAGGAGGTGCTGAAGGCCAGGTACCGCGCCTTCCT AAGGTGCAGGAGGTGCTGAGGGCCAGGTACCGCGCCTTCCT < 41bp 0.710302213656002 0.488272090158004 NA NA prediction 0.420604427312003 Functional Loss - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47054199 chr22:47054198 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_10355 0 0 1 0 1 GRAMD4 chr22:47054204 5'GT 47054204 Upstream 7bp 9749 chr11 66985253 66985253 1 + T C LIHC 66985254 + 66985234 66985274 41 CCTGGAGCTGTACGAGAATTGGCTGCTGTCAGGGAAACAGG CCTGGAGCTGTACGAGAATCGGCTGCTGTCAGGGAAACAGG < 41bp 0.716977548534369 0.506681096661624 NA NA prediction 0.420592903745491 Functional Loss - KDM2A ENSG00000173120 CDS Human protein_coding chr11:66985254 chr11:66985253 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10356 0 0 1 0 2 KDM2A chr11:66985202 3'AG 66985202 Downstream 52bp 9750 chr11 66985253 66985253 1 + T C LIHC 66985254 + 66985234 66985274 41 CCTGGAGCTGTACGAGAATTGGCTGCTGTCAGGGAAACAGG CCTGGAGCTGTACGAGAATCGGCTGCTGTCAGGGAAACAGG < 41bp 0.716977548534369 0.506681096661624 NA NA prediction 0.420592903745491 Functional Loss - KDM2A ENSG00000173120 CDS Human protein_coding chr11:66985254 chr11:66985253 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10356 0 0 1 0 2 KDM2A chr11:66985227 3'AG 66985227 Downstream 27bp 9751 chr1 117484398 117484398 1 + T C SKCM 117484399 + 117484379 117484419 41 TGGTTCGAGTGGTGGGCACTGAGCTGGTCATCCCCTGCAAC TGGTTCGAGTGGTGGGCACCGAGCTGGTCATCCCCTGCAAC < 41bp 0.710281622683248 0.496330502849758 NA NA prediction 0.420563245366495 Functional Loss - PTGFRN ENSG00000134247 CDS Human protein_coding chr1:117484399 chr1:117484398 synonymous SNV . 0 20 hm7G_associated_SNPs_10358 0 0 1 0 1 PTGFRN chr1:117484337 3'AG 117484337 Downstream 62bp 9752 chr5 167880997 167880997 1 + T C rs148648959 167880998 + 167880978 167881018 41 ATGAGGAGACCAGTGAGAATGAGGCAGTAGCCGAGGAAGAG ATGAGGAGACCAGTGAGAACGAGGCAGTAGCCGAGGAAGAG < 41bp 0.733485852366787 0.523231808444204 NA NA prediction 0.420508087845165 Functional Loss - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167880998 chr5:167880997 synonymous SNV . 0 20 hm7G_associated_SNPs_10359 0 0 0 0 1 WWC1 chr5:167880973 3'AG 167880973 Downstream 25bp 9753 chr5 131726450 131726450 1 + T G SKCM 131726451 + 131726431 131726471 41 TTGCATGGGGACATCTTTGTGAACTGCTTCCTTTCAGCGAT TTGCATGGGGACATCTTTGGGAACTGCTTCCTTTCAGCGAT < 41bp 0.710226593697864 0.362541994024276 NA NA prediction 0.420453187395728 Functional Loss - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131726451 chr5:131726450 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10360 0 0 1 0 1 SLC22A5 chr5:131726382 3'AG 131726382 Downstream 69bp 9754 chr17 45913819 45913819 1 + T C LIHC 45913820 + 45913800 45913840 41 AGGAGTTCCCAGAGCTGAGTGGCCCATTCTGCTCAGAACGA AGGAGTTCCCAGAGCTGAGCGGCCCATTCTGCTCAGAACGA < 41bp 0.717093459937586 0.5068673567914 NA NA prediction 0.420452206292371 Functional Loss - LRRC46 ENSG00000141294 CDS Human protein_coding chr17:45913820 chr17:45913819 synonymous SNV . 0 20 hm7G_associated_SNPs_10361 0 0 0 0 1 LRRC46 chr17:45913841 5'GT 45913841 Upstream 23bp 9755 chr17 30696741 30696741 1 + T C STAD 30696742 + 30696722 30696762 41 CCTCGACCTCCGATGGGAATGAGACCTCCTGTAATGTCGCA CCTCGACCTCCGATGGGAACGAGACCTCCTGTAATGTCGCA < 41bp 0.721679832588655 0.511461122507288 NA NA prediction 0.420437420162734 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30696742 chr17:30696741 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10362 0 0 1 0 2 ZNF207 chr17:30696764 5'GT 30696764 Upstream 24bp 9756 chr17 30696741 30696741 1 + T C STAD 30696742 + 30696722 30696762 41 CCTCGACCTCCGATGGGAATGAGACCTCCTGTAATGTCGCA CCTCGACCTCCGATGGGAACGAGACCTCCTGTAATGTCGCA < 41bp 0.721679832588655 0.511461122507288 NA NA prediction 0.420437420162734 Functional Loss - ZNF207 ENSG00000010244 CDS Human protein_coding chr17:30696742 chr17:30696741 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10362 0 0 1 0 2 ZNF207 chr17:30696801 5'GT 30696801 Upstream 61bp 9757 chr1 152975780 152975780 1 + A G UCEC 152975781 + 152975761 152975801 41 GGCTGTACCAAGGTCCCTGAGCCAGGTTGTACCAAGGTCCC GGCTGTACCAAGGTCCCTGGGCCAGGTTGTACCAAGGTCCC < 41bp 0.710217679397321 0.485242203702347 NA NA prediction 0.420435358794643 Functional Loss - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975781 chr1:152975780 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_10363 0 0 0 0 1 SPRR3 chr1:152975701 3'AG 152975701 Downstream 80bp 9758 chr6 74072828 74072828 1 + A G OV 74072829 + 74072809 74072849 41 CCCGCGCAGGCCGGGGCGGAGAACGCATCCCGCACGTCCAG CCCGCGCAGGCCGGGGCGGGGAACGCATCCCGCACGTCCAG < 41bp 0.745516306908085 0.53530638927113 NA NA prediction 0.42041983527391 Functional Loss - KHDC3L ENSG00000203908 CDS Human protein_coding chr6:74072829 chr6:74072828 synonymous SNV . 0 20 hm7G_associated_SNPs_10364 0 0 0 0 1 KHDC3L chr6:74072818 3'AG 74072818 Downstream 11bp 9759 chr22 50538014 50538014 1 + T C KIRC 50538015 + 50537995 50538035 41 CAGACCACCTACTTCTCTCTGGAGAGTGTGTGCGAAGGTAT CAGACCACCTACTTCTCTCCGGAGAGTGTGTGCGAAGGTAT < 41bp 0.711108597050323 0.500915625619935 NA NA prediction 0.420385942860776 Functional Loss - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50538015 chr22:50538014 nonsynonymous SNV 0.966 1 20 hm7G_associated_SNPs_10365 0 0 0 0 1 MOV10L1 chr22:50538031 5'GT 50538031 Upstream 18bp 9760 chr19 39959750 39959750 1 + A G PRAD 39959751 + 39959731 39959771 41 GTGAAGCCAACACTCTCTGAGCTGGAAAAGTTTGAGGACCA GTGAAGCCAACACTCTCTGGGCTGGAAAAGTTTGAGGACCA < 41bp 0.720466151432419 0.510274899490364 NA NA prediction 0.420382503884111 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39959751 chr19:39959750 nonsynonymous SNV 0.829 4 20 hm7G_associated_SNPs_10366 0 0 1 0 2 SUPT5H chr19:39959719 3'AG 39959719 Downstream 32bp 9761 chr19 39959750 39959750 1 + A G PRAD 39959751 + 39959731 39959771 41 GTGAAGCCAACACTCTCTGAGCTGGAAAAGTTTGAGGACCA GTGAAGCCAACACTCTCTGGGCTGGAAAAGTTTGAGGACCA < 41bp 0.720466151432419 0.510274899490364 NA NA prediction 0.420382503884111 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39959751 chr19:39959750 nonsynonymous SNV 0.829 4 20 hm7G_associated_SNPs_10366 0 0 1 0 2 SUPT5H chr19:39959812 5'GT 39959812 Upstream 63bp 9762 chr7 34888188 34888188 1 + T C OV 34888189 + 34888169 34888209 41 GAGCGTTTCTATGCCTCTGTGATCATTCAGAACCTGCCAGC GAGCGTTTCTATGCCTCTGCGATCATTCAGAACCTGCCAGC < 41bp 0.718075397650738 0.507892706146281 NA NA prediction 0.420365383008914 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34888189 chr7:34888188 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10369 0 0 0 0 2 NPSR1 chr7:34888095 3'AG 34888095 Downstream 94bp 9763 chr7 34888188 34888188 1 + T C OV 34888189 + 34888169 34888209 41 GAGCGTTTCTATGCCTCTGTGATCATTCAGAACCTGCCAGC GAGCGTTTCTATGCCTCTGCGATCATTCAGAACCTGCCAGC < 41bp 0.718075397650738 0.507892706146281 NA NA prediction 0.420365383008914 Functional Loss - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34888189 chr7:34888188 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10369 0 0 0 0 2 NPSR1 chr7:34888275 5'GT 34888275 Upstream 88bp 9764 chr17 47246220 47246220 1 + A G SKCM 47246221 + 47246201 47246241 41 CCACACGGAGCGACTCCAAAGAGTTGGCTTTGATCCCCGCC CCACACGGAGCGACTCCAAGGAGTTGGCTTTGATCCCCGCC < 41bp 0.711552301524963 0.501374806011836 NA NA prediction 0.420354991026253 Functional Loss - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47246221 chr17:47246220 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_10370 0 0 0 0 1 B4GALNT2 chr17:47246262 5'GT 47246262 Upstream 43bp 9765 chr19 18120426 18120426 1 + A G LIHC 18120427 + 18120407 18120447 41 CAAGCGGGGGCTCGGGAAAAGGTTGCCCGATCCTGGTACTG CAAGCGGGGGCTCGGGAAAGGGTTGCCCGATCCTGGTACTG < 41bp 0.775685465540105 0.565524421641221 NA NA prediction 0.420322087797768 Functional Loss - ARRDC2 ENSG00000105643 CDS Human protein_coding chr19:18120427 chr19:18120426 nonsynonymous SNV 0.669 4 20 hm7G_associated_SNPs_10371 0 0 0 0 2 ARRDC2 chr19:18120401 3'AG 18120401 Downstream 26bp 9766 chr19 18120426 18120426 1 + A G LIHC 18120427 + 18120407 18120447 41 CAAGCGGGGGCTCGGGAAAAGGTTGCCCGATCCTGGTACTG CAAGCGGGGGCTCGGGAAAGGGTTGCCCGATCCTGGTACTG < 41bp 0.775685465540105 0.565524421641221 NA NA prediction 0.420322087797768 Functional Loss - ARRDC2 ENSG00000105643 CDS Human protein_coding chr19:18120427 chr19:18120426 nonsynonymous SNV 0.669 4 20 hm7G_associated_SNPs_10371 0 0 0 0 2 ARRDC2 chr19:18120503 5'GT 18120503 Upstream 78bp 9767 chr2 85663986 85663986 1 + A G rs531147083 85663987 + 85663967 85664007 41 GGTGTCTGCCCAGTTCACTAGGTCCTGGATGAAGGAACCGT GGTGTCTGCCCAGTTCACTGGGTCCTGGATGAAGGAACCGT < 41bp 0.710159647313375 0.482519570865672 NA NA prediction 0.420319294626749 Functional Loss - SH2D6 ENSG00000152292 UTR3 Human protein_coding chr2:85663987 chr2:85663986 . . 0 20 hm7G_associated_SNPs_10372 0 0 0 0 2 SH2D6 chr2:85663934 3'AG 85663934 Downstream 53bp 9768 chr2 85663986 85663986 1 + A G rs531147083 85663987 + 85663967 85664007 41 GGTGTCTGCCCAGTTCACTAGGTCCTGGATGAAGGAACCGT GGTGTCTGCCCAGTTCACTGGGTCCTGGATGAAGGAACCGT < 41bp 0.710159647313375 0.482519570865672 NA NA prediction 0.420319294626749 Functional Loss - SH2D6 ENSG00000152292 UTR3 Human protein_coding chr2:85663987 chr2:85663986 . . 0 20 hm7G_associated_SNPs_10372 0 0 0 0 2 SH2D6 chr2:85663960 3'AG 85663960 Downstream 27bp 9769 chr2 220439447 220439447 1 + A G LIHC 220439448 + 220439428 220439468 41 AGGACAAGTCAGCTGCCAGAGGGCTGGCCCAGGAGGCTGAG AGGACAAGTCAGCTGCCAGGGGGCTGGCCCAGGAGGCTGAG < 41bp 0.770550266018114 0.56039438851529 NA NA prediction 0.420311755005649 Functional Loss - INHA ENSG00000123999 CDS Human protein_coding chr2:220439448 chr2:220439447 synonymous SNV . 0 20 hm7G_associated_SNPs_10373 0 0 1 0 1 INHA chr2:220439416 3'AG 220439416 Downstream 32bp 9770 chr2 241398554 241398554 1 + A G UCEC 241398555 + 241398535 241398575 41 GGAGACCGCGCTCCGGGACAGCAGCCGCGTCCTGCAGGCCA GGAGACCGCGCTCCGGGACGGCAGCCGCGTCCTGCAGGCCA < 41bp 0.710154247869847 0.476049447907375 NA NA prediction 0.420308495739694 Functional Loss - GPC1 ENSG00000063660 CDS Human protein_coding chr2:241398555 chr2:241398554 nonsynonymous SNV 0.104 0 20 hm7G_associated_SNPs_10374 0 0 0 0 1 GPC1 chr2:241398605 5'GT 241398605 Upstream 52bp 9771 chr3 41275119 41275119 1 + T G SKCM 41275120 + 41275100 41275140 41 AATTCTTTCTAACCTCACTTGCAATAATTATAAGAACAAGA AATTCTTTCTAACCTCACTGGCAATAATTATAAGAACAAGA < 41bp 0.710149026475705 0.368793211396198 NA NA prediction 0.420298052951409 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41275120 chr3:41275119 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10377 0 0 1 0 1 CTNNB1 chr3:41275020 3'AG 41275020 Downstream 100bp 9772 chr6 32609097 32609097 1 + T C rs1129738 32609098 + 32609078 32609118 41 ACTCATCAGCTGACCACGTTGCCTCTTGTGGTGTAAACTTG ACTCATCAGCTGACCACGTCGCCTCTTGTGGTGTAAACTTG < 41bp 0.721000364078747 0.510894374596384 NA NA prediction 0.420211978964727 Functional Loss - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609098 chr6:32609097 synonymous SNV . 0 20 hm7G_associated_SNPs_10378 0 0 0 0 1 HLA-DQA1 chr6:32609087 3'AG 32609087 Downstream 11bp 9773 chr16 67234649 67234649 1 + A G UCEC 67234650 + 67234630 67234670 41 GTGTGACCTTGAGCAGCCCAGCCCTGGGCCAGCTGGTCAAG GTGTGACCTTGAGCAGCCCGGCCCTGGGCCAGCTGGTCAAG < 41bp 0.794527757662255 0.584427440245551 NA NA prediction 0.420200634833407 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234650 chr16:67234649 synonymous SNV . 0 20 hm7G_associated_SNPs_10380 0 0 0 0 2 ELMO3 chr16:67234560 3'AG 67234560 Downstream 90bp 9774 chr16 67234649 67234649 1 + A G UCEC 67234650 + 67234630 67234670 41 GTGTGACCTTGAGCAGCCCAGCCCTGGGCCAGCTGGTCAAG GTGTGACCTTGAGCAGCCCGGCCCTGGGCCAGCTGGTCAAG < 41bp 0.794527757662255 0.584427440245551 NA NA prediction 0.420200634833407 Functional Loss - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234650 chr16:67234649 synonymous SNV . 0 20 hm7G_associated_SNPs_10380 0 0 0 0 2 ELMO3 chr16:67234711 5'GT 67234711 Upstream 63bp 9775 chr14 61997171 61997171 1 + T C rs563690013 61997172 + 61997152 61997192 41 GCAGTAGACTGGTGGGCAATGGGCGTGTTGCTCTATGAGAT GCAGTAGACTGGTGGGCAACGGGCGTGTTGCTCTATGAGAT < 41bp 0.710098956970419 0.499013073887869 NA NA prediction 0.420197913940837 Functional Loss - PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997172 chr14:61997171 nonsynonymous SNV 0.922 2 20 hm7G_associated_SNPs_10381 0 0 0 0 1 PRKCH chr14:61997125 3'AG 61997125 Downstream 47bp 9776 chr3 119534285 119534285 1 + A G BLCA 119534286 + 119534266 119534306 41 CCATCTCCCTCTTCTCCCCAGGTGAGGATCTCCCCTAGGCT CCATCTCCCTCTTCTCCCCGGGTGAGGATCTCCCCTAGGCT < 41bp 0.727055872317763 0.516971005704796 NA NA prediction 0.420169733225933 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119534286 chr3:119534285 synonymous SNV . 0 20 hm7G_associated_SNPs_10382 0 0 1 0 1 NR1I2 chr3:119534286 5'GT 119534286 Upstream 2bp 9777 chr17 60601629 60601629 1 + T G PRAD 60601630 + 60601610 60601650 41 GCGCGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTT GCGCGCCAGGAACCAGCCCGGGCAGAAGTGTTCCACCAGTT < 41bp 0.710071697951709 0.357955681541684 NA NA prediction 0.420143395903418 Functional Loss - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60601630 chr17:60601629 synonymous SNV . 0 20 hm7G_associated_SNPs_10385 0 0 1 0 2 TLK2 chr17:60601597 3'AG 60601597 Downstream 33bp 9778 chr17 60601629 60601629 1 + T G PRAD 60601630 + 60601610 60601650 41 GCGCGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTT GCGCGCCAGGAACCAGCCCGGGCAGAAGTGTTCCACCAGTT < 41bp 0.710071697951709 0.357955681541684 NA NA prediction 0.420143395903418 Functional Loss - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60601630 chr17:60601629 synonymous SNV . 0 20 hm7G_associated_SNPs_10385 0 0 1 0 2 TLK2 chr17:60601692 5'GT 60601692 Upstream 64bp 9779 chr12 6619898 6619898 1 + T C rs12302888 6619899 + 6619879 6619919 41 CCCTCAAAATGAACTGTTATGCTCTGATACGTCTCCTGGAA CCCTCAAAATGAACTGTTACGCTCTGATACGTCTCCTGGAA < 41bp 0.721285392274348 0.511213786200384 NA NA prediction 0.420143212147928 Functional Loss - NCAPD2 ENSG00000010292 CDS Human protein_coding chr12:6619899 chr12:6619898 synonymous SNV . 0 20 hm7G_associated_SNPs_10386 0 0 1 0 1 NCAPD2 chr12:6619976 5'GT 6619976 Upstream 79bp 9780 chr7 33014934 33014934 1 + A G COAD 33014935 + 33014915 33014955 41 CCAGGTGTCTGATTTTGTGAGGTACCACTACAACGGGACGT CCAGGTGTCTGATTTTGTGGGGTACCACTACAACGGGACGT < 41bp 0.710070278382984 0.498513525534853 NA NA prediction 0.420140556765969 Functional Loss - FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014935 chr7:33014934 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_10388 0 0 0 0 1 FKBP9 chr7:33014983 5'GT 33014983 Upstream 50bp 9781 chr2 187540353 187540353 1 + T G BRCA 187540354 + 187540334 187540374 41 TGTGGAGTTGCTCAGTGCTTGAAGATTGTCTGCCAAGTTGG TGTGGAGTTGCTCAGTGCTGGAAGATTGTCTGCCAAGTTGG < 41bp 0.710060818520806 0.380707033394699 NA NA prediction 0.420121637041611 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187540354 chr2:187540353 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_10389 0 0 1 0 1 ITGAV chr2:187540444 5'GT 187540444 Upstream 92bp 9782 chr11 22248924 22248924 1 + T G SKCM 22248925 + 22248905 22248945 41 GTTACCTATGCTGAAGTCTTGGGAATCAAAATGCCTATTAA GTTACCTATGCTGAAGTCTGGGGAATCAAAATGCCTATTAA < 41bp 0.710052309939581 0.37458963061755 NA NA prediction 0.420104619879162 Functional Loss - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22248925 chr11:22248924 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_10390 0 0 1 0 1 ANO5 chr11:22248848 3'AG 22248848 Downstream 77bp 9783 chr19 12984173 12984173 1 + A G UCEC 12984174 + 12984154 12984194 41 CTCTTCCGGAAGATCACGAAGCAGTCGAACCTGCTGCATAC CTCTTCCGGAAGATCACGAGGCAGTCGAACCTGCTGCATAC < 41bp 0.754599899244333 0.544560660923811 NA NA prediction 0.420078476641044 Functional Loss - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12984174 chr19:12984173 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10391 0 0 0 0 1 MAST1 chr19:12984138 3'AG 12984138 Downstream 36bp 9784 chr2 33759419 33759419 1 + T C rs550267818 33759420 + 33759400 33759440 41 ACCTCTATCACACTGAAGATGATATTTACAAACTGTCACTG ACCTCTATCACACTGAAGACGATATTTACAAACTGTCACTG < 41bp 0.710011575669395 0.49752700872137 NA NA prediction 0.42002315133879 Functional Loss - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33759420 chr2:33759419 synonymous SNV . 0 20 hm7G_associated_SNPs_10394 0 0 0 0 2 RASGRP3 chr2:33759390 3'AG 33759390 Downstream 30bp 9785 chr2 33759419 33759419 1 + T C rs550267818 33759420 + 33759400 33759440 41 ACCTCTATCACACTGAAGATGATATTTACAAACTGTCACTG ACCTCTATCACACTGAAGACGATATTTACAAACTGTCACTG < 41bp 0.710011575669395 0.49752700872137 NA NA prediction 0.42002315133879 Functional Loss - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33759420 chr2:33759419 synonymous SNV . 0 20 hm7G_associated_SNPs_10394 0 0 0 0 2 RASGRP3 chr2:33759467 5'GT 33759467 Upstream 49bp 9786 chr17 78055787 78055787 1 + T C STAD 78055788 + 78055768 78055808 41 GAGAAGCTGCAGGAGCACATGACCTCCAACAAGACCACCAA GAGAAGCTGCAGGAGCACACGACCTCCAACAAGACCACCAA < 41bp 0.743520493876248 0.533522251006376 NA NA prediction 0.419996485739745 Functional Loss - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78055788 chr17:78055787 nonsynonymous SNV 0.950 0 20 hm7G_associated_SNPs_10395 0 0 0 0 1 CCDC40 chr17:78055857 5'GT 78055857 Upstream 71bp 9787 chr5 79372860 79372860 1 + A G COAD 79372861 + 79372841 79372881 41 GTCCCCAACCCAGCCCAGGAGGATAGCAACAGTAAGCAGGC GTCCCCAACCCAGCCCAGGGGGATAGCAACAGTAAGCAGGC < 41bp 0.712226073416825 0.502228797130987 NA NA prediction 0.419994552571676 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79372861 chr5:79372860 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10396 0 0 0 0 1 THBS4 chr5:79372871 5'GT 79372871 Upstream 12bp 9788 chr11 66583569 66583569 1 + A G UCEC 66583570 + 66583550 66583590 41 CAGGTGGAATCCAGTGAGGAGGATCAGTCTCAGACTATGGA CAGGTGGAATCCAGTGAGGGGGATCAGTCTCAGACTATGGA < 41bp 0.716301615946033 0.506308313265826 NA NA prediction 0.419986605360414 Functional Loss - C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66583570 chr11:66583569 nonsynonymous SNV 0.550 0 20 hm7G_associated_SNPs_10397 0 0 0 0 1 C11orf80 chr11:66583524 3'AG 66583524 Downstream 46bp 9789 chr16 47533773 47533773 1 + T C ESCA 47533774 + 47533754 47533794 41 AGGACAGCCTATACTGCGCTGCTGGGGCCTGGGCTTTGGCT AGGACAGCCTATACTGCGCCGCTGGGGCCTGGGCTTTGGCT < 41bp 0.719361752914884 0.509382543583581 NA NA prediction 0.419958418662607 Functional Loss - PHKB ENSG00000102893 CDS Human protein_coding chr16:47533774 chr16:47533773 synonymous SNV . 0 20 hm7G_associated_SNPs_10398 0 0 1 0 1 PHKB chr16:47533805 5'GT 47533805 Upstream 33bp 9790 chr4 52944993 52944993 1 + T C STAD 52944994 + 52944974 52945014 41 ATGTGGGGTCGAATGACTTTGAGAATGCTGTCTTGGATTAT ATGTGGGGTCGAATGACTTCGAGAATGCTGTCTTGGATTAT < 41bp 0.723455853971152 0.513517088785 NA NA prediction 0.419877530372304 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52944994 chr4:52944993 synonymous SNV . 0 20 hm7G_associated_SNPs_10401 0 0 0 0 2 SPATA18 chr4:52944901 3'AG 52944901 Downstream 93bp 9791 chr4 52944993 52944993 1 + T C STAD 52944994 + 52944974 52945014 41 ATGTGGGGTCGAATGACTTTGAGAATGCTGTCTTGGATTAT ATGTGGGGTCGAATGACTTCGAGAATGCTGTCTTGGATTAT < 41bp 0.723455853971152 0.513517088785 NA NA prediction 0.419877530372304 Functional Loss - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52944994 chr4:52944993 synonymous SNV . 0 20 hm7G_associated_SNPs_10401 0 0 0 0 2 SPATA18 chr4:52945059 5'GT 52945059 Upstream 67bp 9792 chr17 16332163 16332163 1 + A G UCEC 16332164 + 16332144 16332184 41 CTGCTCACAGTGGTGTCCCAGGTGCTGTGTTTCCTGGCCAT CTGCTCACAGTGGTGTCCCGGGTGCTGTGTTTCCTGGCCAT < 41bp 0.741441856680097 0.531503598675679 NA NA prediction 0.419876516008838 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332164 chr17:16332163 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10402 0 0 0 0 1 TRPV2 chr17:16332131 3'AG 16332131 Downstream 33bp 9793 chr17 4797498 4797498 1 + T C LGG 4797499 + 4797479 4797519 41 AGGAGCGGAACCTGCTGCATGCTGACAGCAATGGGTACACA AGGAGCGGAACCTGCTGCACGCTGACAGCAATGGGTACACA < 41bp 0.710463729229883 0.500540248385573 NA NA prediction 0.41984696168862 Functional Loss - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4797499 chr17:4797498 synonymous SNV . 0 20 hm7G_associated_SNPs_10403 0 0 1 0 1 MINK1 chr17:4797469 3'AG 4797469 Downstream 30bp 9794 chr1 200877931 200877931 1 + T G BLCA 200877932 + 200877912 200877952 41 CTCTCCCACCCCAAACCCTTGAGGGTCTGCAGCCAACAGGA CTCTCCCACCCCAAACCCTGGAGGGTCTGCAGCCAACAGGA < 41bp 0.709910311410834 0.35037008574642 NA NA prediction 0.419820622821669 Functional Loss - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200877932 chr1:200877931 synonymous SNV . 0 20 hm7G_associated_SNPs_10404 0 0 0 0 1 C1orf106 chr1:200877858 3'AG 200877858 Downstream 74bp 9795 chr12 119916932 119916932 1 + A G LAML 119916933 + 119916913 119916953 41 AGAAGTTGAAGACACTGGGAGCTAGAGTCACACGTCGCCCA AGAAGTTGAAGACACTGGGGGCTAGAGTCACACGTCGCCCA < 41bp 0.728219677570928 0.518324686536897 NA NA prediction 0.419789982068062 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119916933 chr12:119916932 synonymous SNV . 0 20 hm7G_associated_SNPs_10405 0 0 0 0 2 CCDC60 chr12:119916899 3'AG 119916899 Downstream 34bp 9796 chr12 119916932 119916932 1 + A G LAML 119916933 + 119916913 119916953 41 AGAAGTTGAAGACACTGGGAGCTAGAGTCACACGTCGCCCA AGAAGTTGAAGACACTGGGGGCTAGAGTCACACGTCGCCCA < 41bp 0.728219677570928 0.518324686536897 NA NA prediction 0.419789982068062 Functional Loss - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119916933 chr12:119916932 synonymous SNV . 0 20 hm7G_associated_SNPs_10405 0 0 0 0 2 CCDC60 chr12:119917006 5'GT 119917006 Upstream 75bp 9797 chr19 14562650 14562650 1 + A G OV 14562651 + 14562631 14562671 41 CCTCCTGCAGGGACCCTGGAGGTACGAGTGGTGGGCTGCAG CCTCCTGCAGGGACCCTGGGGGTACGAGTGGTGGGCTGCAG < 41bp 0.741726263306705 0.531846442104549 NA NA prediction 0.419759642404313 Functional Loss - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562651 chr19:14562650 nonsynonymous SNV 0.592 1 20 hm7G_associated_SNPs_10407 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 10bp 9798 chr12 57908595 57908595 1 + T G ACC 57908596 + 57908576 57908616 41 CTGCTGGCCCATGTCACCCTGGAGCTCCAGCACTATCACCA CTGCTGGCCCATGTCACCCGGGAGCTCCAGCACTATCACCA < 41bp 0.709879802551743 0.354680277081531 NA NA prediction 0.419759605103486 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57908596 chr12:57908595 nonsynonymous SNV 0.844 0 20 hm7G_associated_SNPs_10408 0 0 1 0 2 MARS chr12:57908503 3'AG 57908503 Downstream 93bp 9799 chr12 57908595 57908595 1 + T G ACC 57908596 + 57908576 57908616 41 CTGCTGGCCCATGTCACCCTGGAGCTCCAGCACTATCACCA CTGCTGGCCCATGTCACCCGGGAGCTCCAGCACTATCACCA < 41bp 0.709879802551743 0.354680277081531 NA NA prediction 0.419759605103486 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57908596 chr12:57908595 nonsynonymous SNV 0.844 0 20 hm7G_associated_SNPs_10408 0 0 1 0 2 MARS chr12:57908634 5'GT 57908634 Upstream 40bp 9800 chr15 92669369 92669369 1 + T C COAD 92669370 + 92669350 92669390 41 AAGCTCAGCCTGTCTGCCCTGGGGGCCATTCGGATGGCCAT AAGCTCAGCCTGTCTGCCCCGGGGGCCATTCGGATGGCCAT < 41bp 0.709858289704538 0.495429687989293 NA NA prediction 0.419716579409075 Functional Loss - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92669370 chr15:92669369 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10411 0 0 0 0 1 SLCO3A1 chr15:92669291 3'AG 92669291 Downstream 79bp 9801 chr1 23403815 23403815 1 + T G UCEC 23403816 + 23403796 23403836 41 GAAGGCCTAGACATTAAACTGAATACAGCAGTGCGACAGGT GAAGGCCTAGACATTAAACGGAATACAGCAGTGCGACAGGT < 41bp 0.901186714897704 0.69134195619856 NA NA prediction 0.419689517398287 Functional Loss - KDM1A ENSG00000004487 CDS Human protein_coding chr1:23403816 chr1:23403815 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_10414 0 0 1 0 2 KDM1A chr1:23403721 3'AG 23403721 Downstream 95bp 9802 chr1 23403815 23403815 1 + T G UCEC 23403816 + 23403796 23403836 41 GAAGGCCTAGACATTAAACTGAATACAGCAGTGCGACAGGT GAAGGCCTAGACATTAAACGGAATACAGCAGTGCGACAGGT < 41bp 0.901186714897704 0.69134195619856 NA NA prediction 0.419689517398287 Functional Loss - KDM1A ENSG00000004487 CDS Human protein_coding chr1:23403816 chr1:23403815 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_10414 0 0 1 0 2 KDM1A chr1:23403853 5'GT 23403853 Upstream 39bp 9803 chr15 57743715 57743715 1 + T C COAD 57743716 + 57743696 57743736 41 AGGCTTGTAATTCCACATCTGAAGTCAAAGATCTATTGGAA AGGCTTGTAATTCCACATCCGAAGTCAAAGATCTATTGGAA < 41bp 0.72058540187338 0.510764870968025 NA NA prediction 0.419641061810709 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57743716 chr15:57743715 synonymous SNV . 0 20 hm7G_associated_SNPs_10417 0 0 0 0 2 CGNL1 chr15:57743698 3'AG 57743698 Downstream 18bp 9804 chr15 57743715 57743715 1 + T C COAD 57743716 + 57743696 57743736 41 AGGCTTGTAATTCCACATCTGAAGTCAAAGATCTATTGGAA AGGCTTGTAATTCCACATCCGAAGTCAAAGATCTATTGGAA < 41bp 0.72058540187338 0.510764870968025 NA NA prediction 0.419641061810709 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57743716 chr15:57743715 synonymous SNV . 0 20 hm7G_associated_SNPs_10417 0 0 0 0 2 CGNL1 chr15:57743799 5'GT 57743799 Upstream 85bp 9805 chr17 39974642 39974642 1 + A G rs34764749 39974643 + 39974623 39974663 41 ATTTTCTGCAGCTACAGTAAGGGCGGCACTTATGACACCTA ATTTTCTGCAGCTACAGTAGGGGCGGCACTTATGACACCTA < 41bp 0.748267510710361 0.538508074921401 NA NA prediction 0.419518871577921 Functional Loss - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974643 chr17:39974642 nonsynonymous SNV 0.808 0 20 hm7G_associated_SNPs_10420 2 0 1 0 1 FKBP10 chr17:39974634 3'AG 39974634 Downstream 9bp 9806 chr8 22865591 22865591 1 + T C CESC 22865592 + 22865572 22865612 41 ACTGGATGGCTGCCATGTTTGGGGGGCCATTTGTGGAGAGC ACTGGATGGCTGCCATGTTCGGGGGGCCATTTGTGGAGAGC < 41bp 0.72447100282434 0.514724369892826 NA NA prediction 0.419493265863028 Functional Loss - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865592 chr8:22865591 synonymous SNV . 0 20 hm7G_associated_SNPs_10421 0 0 0 0 2 RHOBTB2 chr8:22865506 3'AG 22865506 Downstream 86bp 9807 chr8 22865591 22865591 1 + T C CESC 22865592 + 22865572 22865612 41 ACTGGATGGCTGCCATGTTTGGGGGGCCATTTGTGGAGAGC ACTGGATGGCTGCCATGTTCGGGGGGCCATTTGTGGAGAGC < 41bp 0.72447100282434 0.514724369892826 NA NA prediction 0.419493265863028 Functional Loss - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865592 chr8:22865591 synonymous SNV . 0 20 hm7G_associated_SNPs_10421 0 0 0 0 2 RHOBTB2 chr8:22865624 5'GT 22865624 Upstream 34bp 9808 chr19 19329793 19329793 1 + A G rs578187378 19329794 + 19329774 19329814 41 CTGGGGTCTGGGTCAGTGCAGGCTGCGCTGGCGGAGCTGGT CTGGGGTCTGGGTCAGTGCGGGCTGCGCTGGCGGAGCTGGT < 41bp 0.756899788311168 0.547162150963994 NA NA prediction 0.419475274694348 Functional Loss - NCAN ENSG00000130287 CDS Human protein_coding chr19:19329794 chr19:19329793 nonsynonymous SNV 0.145 0 20 hm7G_associated_SNPs_10423 0 0 0 0 1 NCAN chr19:19329724 3'AG 19329724 Downstream 70bp 9809 chr5 70945000 70945000 1 + T C LIHC 70945001 + 70944981 70945021 41 TGGTGGCCGCTGTGGCCTGTGCCCAAGTGCCTAAGATAACC TGGTGGCCGCTGTGGCCTGCGCCCAAGTGCCTAAGATAACC < 41bp 0.721882968612955 0.512151281865688 NA NA prediction 0.419463373494534 Functional Loss - MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70945001 chr5:70945000 synonymous SNV . 0 20 hm7G_associated_SNPs_10425 0 0 1 0 2 MCCC2 chr5:70944924 3'AG 70944924 Downstream 77bp 9810 chr5 70945000 70945000 1 + T C LIHC 70945001 + 70944981 70945021 41 TGGTGGCCGCTGTGGCCTGTGCCCAAGTGCCTAAGATAACC TGGTGGCCGCTGTGGCCTGCGCCCAAGTGCCTAAGATAACC < 41bp 0.721882968612955 0.512151281865688 NA NA prediction 0.419463373494534 Functional Loss - MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70945001 chr5:70945000 synonymous SNV . 0 20 hm7G_associated_SNPs_10425 0 0 1 0 2 MCCC2 chr5:70945080 5'GT 70945080 Upstream 81bp 9811 chr19 18235080 18235080 1 + T C rs533820472 18235081 + 18235061 18235101 41 CCCACCTCCCCCAGGCCCATGAGCGTTCGGACAGTGAGGAG CCCACCTCCCCCAGGCCCACGAGCGTTCGGACAGTGAGGAG < 41bp 0.711226270168912 0.501510909029595 NA NA prediction 0.419430722278634 Functional Loss - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18235081 chr19:18235080 synonymous SNV . 0 20 hm7G_associated_SNPs_10427 0 0 1 0 2 MAST3 chr19:18235075 3'AG 18235075 Downstream 6bp 9812 chr19 18235080 18235080 1 + T C rs533820472 18235081 + 18235061 18235101 41 CCCACCTCCCCCAGGCCCATGAGCGTTCGGACAGTGAGGAG CCCACCTCCCCCAGGCCCACGAGCGTTCGGACAGTGAGGAG < 41bp 0.711226270168912 0.501510909029595 NA NA prediction 0.419430722278634 Functional Loss - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18235081 chr19:18235080 synonymous SNV . 0 20 hm7G_associated_SNPs_10427 0 0 1 0 2 MAST3 chr19:18235176 5'GT 18235176 Upstream 97bp 9813 chr14 45642344 45642344 1 + T C UCEC 45642345 + 45642325 45642365 41 CTTTGCCTACACATCAAGTTGATCACTCAGATCGATGCCGC CTTTGCCTACACATCAAGTCGATCACTCAGATCGATGCCGC < 41bp 0.735706260063827 0.526013709143422 NA NA prediction 0.41938510184081 Functional Loss - FANCM ENSG00000187790 CDS Human protein_coding chr14:45642345 chr14:45642344 synonymous SNV . 0 20 hm7G_associated_SNPs_10428 0 0 0 0 2 FANCM chr14:45642258 3'AG 45642258 Downstream 87bp 9814 chr14 45642344 45642344 1 + T C UCEC 45642345 + 45642325 45642365 41 CTTTGCCTACACATCAAGTTGATCACTCAGATCGATGCCGC CTTTGCCTACACATCAAGTCGATCACTCAGATCGATGCCGC < 41bp 0.735706260063827 0.526013709143422 NA NA prediction 0.41938510184081 Functional Loss - FANCM ENSG00000187790 CDS Human protein_coding chr14:45642345 chr14:45642344 synonymous SNV . 0 20 hm7G_associated_SNPs_10428 0 0 0 0 2 FANCM chr14:45642413 5'GT 45642413 Upstream 70bp 9815 chr17 26712108 26712108 1 + T C UCEC 26712109 + 26712089 26712129 41 CTTCGCCAACTATTCTACGTGCGACCGCAGCAACCTGGCGG CTTCGCCAACTATTCTACGCGCGACCGCAGCAACCTGGCGG < 41bp 0.727053045038136 0.517367830041288 NA NA prediction 0.419370429993695 Functional Loss - SARM1 ENSG00000004139 CDS Human protein_coding chr17:26712109 chr17:26712108 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_10429 0 0 0 0 1 SARM1 chr17:26712059 3'AG 26712059 Downstream 50bp 9816 chr1 1425753 1425753 1 + T C rs145313947 1425754 + 1425734 1425774 41 GAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGACAACTG GAGGAGCGGGAGCGCCTGGCGAGACTGCATTTTGACAACTG < 41bp 0.729563557234448 0.51989071288969 NA NA prediction 0.419345688689514 Functional Loss - ATAD3B ENSG00000160072 CDS Human protein_coding chr1:1425754 chr1:1425753 nonsynonymous SNV 0.127 4 20 hm7G_associated_SNPs_10430 0 0 1 0 1 ATAD3B chr1:1425804 5'GT 1425804 Upstream 52bp 9817 chr7 143042656 143042656 1 + A G LIHC 143042657 + 143042637 143042677 41 GTGGAGCGGTCGGAACTGCAGGCCCTCCTGCAGCGCCACCT GTGGAGCGGTCGGAACTGCGGGCCCTCCTGCAGCGCCACCT < 41bp 0.768696128036483 0.559026182824794 NA NA prediction 0.419339890423378 Functional Loss - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143042657 chr7:143042656 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_10431 0 0 0 0 1 CLCN1 chr7:143042614 3'AG 143042614 Downstream 43bp 9818 chr7 76071228 76071228 1 + A G rs143649134 76071229 + 76071209 76071249 41 AGGGGTGACCATGAAGTAGAGCAGTGGGCTTTGCCTTCTGA AGGGGTGACCATGAAGTAGGGCAGTGGGCTTTGCCTTCTGA < 41bp 0.743718906807433 0.534060569468721 NA NA prediction 0.419316674677424 Functional Loss - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76071229 chr7:76071228 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_10432 0 0 0 0 1 ZP3 chr7:76071159 3'AG 76071159 Downstream 70bp 9819 chr20 46281792 46281792 1 + T C HNSC 46281793 + 46281773 46281813 41 TGAACCCCATGCCCATGTCTGGCATGCCTATGGGTCCTGAT TGAACCCCATGCCCATGTCCGGCATGCCTATGGGTCCTGAT < 41bp 0.712633594971511 0.502976211891653 NA NA prediction 0.419314766159716 Functional Loss - NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46281793 chr20:46281792 synonymous SNV . 0 20 hm7G_associated_SNPs_10433 0 0 0 0 1 NCOA3 chr20:46281816 5'GT 46281816 Upstream 25bp 9820 chr12 109623397 109623397 1 + T C rs567060031 109623398 + 109623378 109623418 41 TTTTAGATCGCCATGGGCGTGCCACTGCACCGGCTGAAGGA TTTTAGATCGCCATGGGCGCGCCACTGCACCGGCTGAAGGA < 41bp 0.712844087332088 0.503201387637909 NA NA prediction 0.419285399388358 Functional Loss - ACACB ENSG00000076555 CDS Human protein_coding chr12:109623398 chr12:109623397 nonsynonymous SNV 0.947 3 20 hm7G_associated_SNPs_10434 0 0 1 0 1 ACACB chr12:109623384 3'AG 109623384 Downstream 14bp 9821 chr16 67318359 67318359 1 + A G UCEC 67318360 + 67318340 67318380 41 CTGTTTCAGCTCTTCAGGGAGGTGGGTGAGAGTCTCCCCAG CTGTTTCAGCTCTTCAGGGGGGTGGGTGAGAGTCTCCCCAG < 41bp 0.737202983192957 0.527583644202621 NA NA prediction 0.419238677980671 Functional Loss - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67318360 chr16:67318359 nonsynonymous SNV 0.871 1 20 hm7G_associated_SNPs_10435 0 0 1 0 1 PLEKHG4 chr16:67318360 5'GT 67318360 Upstream 2bp 9822 chr11 71504475 71504475 1 + T C rs3935309 71504476 + 71504456 71504496 41 GAGCTGTACGAGGTGCTGGTGGAGACCCTGATGGCCAAGGA GAGCTGTACGAGGTGCTGGCGGAGACCCTGATGGCCAAGGA < 41bp 0.730104961591807 0.520492366743035 NA NA prediction 0.419225189697545 Functional Loss - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71504476 chr11:71504475 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10437 0 0 0 0 2 FAM86C1 chr11:71504426 3'AG 71504426 Downstream 50bp 9823 chr11 71504475 71504475 1 + T C rs3935309 71504476 + 71504456 71504496 41 GAGCTGTACGAGGTGCTGGTGGAGACCCTGATGGCCAAGGA GAGCTGTACGAGGTGCTGGCGGAGACCCTGATGGCCAAGGA < 41bp 0.730104961591807 0.520492366743035 NA NA prediction 0.419225189697545 Functional Loss - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71504476 chr11:71504475 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10437 0 0 0 0 2 FAM86C1 chr11:71504527 5'GT 71504527 Upstream 53bp 9824 chr1 156849125 156849125 1 + A G COAD 156849126 + 156849106 156849146 41 TGGTGATTTTGGCATGAGCAGGGATATCTACAGCACCGACT TGGTGATTTTGGCATGAGCGGGGATATCTACAGCACCGACT < 41bp 0.709594801147063 0.49688006853566 NA NA prediction 0.419189602294126 Functional Loss - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156849126 chr1:156849125 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10439 0 0 1 0 1 NTRK1 chr1:156849154 5'GT 156849154 Upstream 30bp 9825 chr16 55525777 55525777 1 + A G BLCA 55525778 + 55525758 55525798 41 TGGGGCTGGAGCACTCCCAAGACCCTGGGGCCCTGATGGCA TGGGGCTGGAGCACTCCCAGGACCCTGGGGCCCTGATGGCA < 41bp 0.75179849663793 0.542209459665413 NA NA prediction 0.419178073945035 Functional Loss - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55525778 chr16:55525777 synonymous SNV . 0 20 hm7G_associated_SNPs_10440 0 0 0 0 1 MMP2 chr16:55525868 5'GT 55525868 Upstream 92bp 9826 chr10 101559079 101559079 1 + T C UCEC 101559080 + 101559060 101559100 41 CTCCTGAAATCATTCCTACTGAAGCTAGTGAATGACATCTT CTCCTGAAATCATTCCTACCGAAGCTAGTGAATGACATCTT < 41bp 0.715802453774649 0.506242452577733 NA NA prediction 0.419120002393831 Functional Loss - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101559080 chr10:101559079 nonsynonymous SNV 0.126 4 20 hm7G_associated_SNPs_10442 0 0 0 0 1 ABCC2 chr10:101559127 5'GT 101559127 Upstream 49bp 9827 chr15 91422675 91422675 1 + T C COAD 91422676 + 91422656 91422696 41 TGATTCTCTTCCTGGCAGGTGACGACTGACTTGCGGCAGAA TGATTCTCTTCCTGGCAGGCGACGACTGACTTGCGGCAGAA < 41bp 0.720468900634251 0.510915780724255 NA NA prediction 0.419106239819992 Functional Loss - FURIN ENSG00000140564 CDS Human protein_coding chr15:91422676 chr15:91422675 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_10443 0 0 1 0 2 FURIN chr15:91422674 3'AG 91422674 Downstream 2bp 9828 chr15 91422675 91422675 1 + T C COAD 91422676 + 91422656 91422696 41 TGATTCTCTTCCTGGCAGGTGACGACTGACTTGCGGCAGAA TGATTCTCTTCCTGGCAGGCGACGACTGACTTGCGGCAGAA < 41bp 0.720468900634251 0.510915780724255 NA NA prediction 0.419106239819992 Functional Loss - FURIN ENSG00000140564 CDS Human protein_coding chr15:91422676 chr15:91422675 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_10443 0 0 1 0 2 FURIN chr15:91422774 5'GT 91422774 Upstream 100bp 9829 chr12 58090095 58090095 1 + A G LUSC 58090096 + 58090076 58090116 41 CTTAAACGCTACCACAGCCAGACCTATGGCAATGGGTCCAA CTTAAACGCTACCACAGCCGGACCTATGGCAATGGGTCCAA < 41bp 0.709542735795769 0.499378949983665 NA NA prediction 0.419085471591538 Functional Loss - OS9 ENSG00000135506;ENSG00000135506 exonic;splicing Human protein_coding chr12:58090096 chr12:58090095 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10444 0 0 1 0 2 OS9 chr12:58090058 3'AG 58090058 Downstream 38bp 9830 chr12 58090095 58090095 1 + A G LUSC 58090096 + 58090076 58090116 41 CTTAAACGCTACCACAGCCAGACCTATGGCAATGGGTCCAA CTTAAACGCTACCACAGCCGGACCTATGGCAATGGGTCCAA < 41bp 0.709542735795769 0.499378949983665 NA NA prediction 0.419085471591538 Functional Loss - OS9 ENSG00000135506;ENSG00000135506 exonic;splicing Human protein_coding chr12:58090096 chr12:58090095 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10444 0 0 1 0 2 OS9 chr12:58090156 5'GT 58090156 Upstream 62bp 9831 chr11 119058404 119058404 1 + A G LIHC 119058405 + 119058385 119058425 41 CACTCACAACCAACTCACCAGGAAGGTGTGACTGCCTGTCT CACTCACAACCAACTCACCGGGAAGGTGTGACTGCCTGTCT < 41bp 0.709538917991931 0.489402122859833 NA NA prediction 0.419077835983861 Functional Loss - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119058405 chr11:119058404 nonsynonymous SNV 0.943 3 20 hm7G_associated_SNPs_10445 0 0 0 0 1 PDZD3 chr11:119058409 5'GT 119058409 Upstream 6bp 9832 chr12 122246136 122246136 1 + T C rs145928437 122246137 + 122246117 122246157 41 AAACCCGAATGCGGTTCTATGAACTGTTGGTCACTGGCCGA AAACCCGAATGCGGTTCTACGAACTGTTGGTCACTGGCCGA < 41bp 0.71455220939907 0.505014008730766 NA NA prediction 0.419076401336607 Functional Loss - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122246137 chr12:122246136 synonymous SNV . 0 20 hm7G_associated_SNPs_10446 0 0 1 0 2 SETD1B chr12:122246114 3'AG 122246114 Downstream 23bp 9833 chr12 122246136 122246136 1 + T C rs145928437 122246137 + 122246117 122246157 41 AAACCCGAATGCGGTTCTATGAACTGTTGGTCACTGGCCGA AAACCCGAATGCGGTTCTACGAACTGTTGGTCACTGGCCGA < 41bp 0.71455220939907 0.505014008730766 NA NA prediction 0.419076401336607 Functional Loss - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122246137 chr12:122246136 synonymous SNV . 0 20 hm7G_associated_SNPs_10446 0 0 1 0 2 SETD1B chr12:122246226 5'GT 122246226 Upstream 91bp 9834 chr10 45907734 45907734 1 + T C STAD 45907735 + 45907715 45907755 41 TTTGATAGTGAAAAAGGAGTGGACTTTGTTCTGAATTACTC TTTGATAGTGAAAAAGGAGCGGACTTTGTTCTGAATTACTC < 41bp 0.709513090271498 0.494304893872774 NA NA prediction 0.419026180542995 Functional Loss - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45907735 chr10:45907734 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10447 0 0 1 0 1 ALOX5 chr10:45907639 3'AG 45907639 Downstream 96bp 9835 chrX 100490938 100490938 1 + T C COAD 100490939 + 100490919 100490959 41 TGTTGAACGGGTCTGTTGGTGCCTCTGGACCCCTGGAACCA TGTTGAACGGGTCTGTTGGCGCCTCTGGACCCCTGGAACCA < 41bp 0.730999584117524 0.521493586009089 NA NA prediction 0.419011996216869 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100490939 chrX:100490938 synonymous SNV . 0 20 hm7G_associated_SNPs_10448 0 0 0 0 2 DRP2 chrX:100490849 3'AG 100490849 Downstream 90bp 9836 chrX 100490938 100490938 1 + T C COAD 100490939 + 100490919 100490959 41 TGTTGAACGGGTCTGTTGGTGCCTCTGGACCCCTGGAACCA TGTTGAACGGGTCTGTTGGCGCCTCTGGACCCCTGGAACCA < 41bp 0.730999584117524 0.521493586009089 NA NA prediction 0.419011996216869 Functional Loss - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100490939 chrX:100490938 synonymous SNV . 0 20 hm7G_associated_SNPs_10448 0 0 0 0 2 DRP2 chrX:100491012 5'GT 100491012 Upstream 75bp 9837 chr9 27218784 27218784 1 + T C UCEC 27218785 + 27218765 27218805 41 CCTCCTGCAGATGGTCCTATGGTGTGTTACTATGGGAGATT CCTCCTGCAGATGGTCCTACGGTGTGTTACTATGGGAGATT < 41bp 0.713007335855421 0.503541764415155 NA NA prediction 0.418931142880532 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27218785 chr9:27218784 synonymous SNV . 0 20 hm7G_associated_SNPs_10451 0 0 0 0 2 TEK chr9:27218775 3'AG 27218775 Downstream 10bp 9838 chr9 27218784 27218784 1 + T C UCEC 27218785 + 27218765 27218805 41 CCTCCTGCAGATGGTCCTATGGTGTGTTACTATGGGAGATT CCTCCTGCAGATGGTCCTACGGTGTGTTACTATGGGAGATT < 41bp 0.713007335855421 0.503541764415155 NA NA prediction 0.418931142880532 Functional Loss - TEK ENSG00000120156 CDS Human protein_coding chr9:27218785 chr9:27218784 synonymous SNV . 0 20 hm7G_associated_SNPs_10451 0 0 0 0 2 TEK chr9:27218815 5'GT 27218815 Upstream 32bp 9839 chr8 145726595 145726595 1 + A G BLCA 145726596 + 145726576 145726616 41 GAGGCCATCGTGTGGCAACAGCCGCCGCCCACCAGCCCGGA GAGGCCATCGTGTGGCAACGGCCGCCGCCCACCAGCCCGGA < 41bp 0.771790523659795 0.562336906389838 NA NA prediction 0.418907234539913 Functional Loss - PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145726596 chr8:145726595 nonsynonymous SNV 0.958 1 20 hm7G_associated_SNPs_10453 0 0 0 0 2 PPP1R16A chr8:145726512 3'AG 145726512 Downstream 84bp 9840 chr8 145726595 145726595 1 + A G BLCA 145726596 + 145726576 145726616 41 GAGGCCATCGTGTGGCAACAGCCGCCGCCCACCAGCCCGGA GAGGCCATCGTGTGGCAACGGCCGCCGCCCACCAGCCCGGA < 41bp 0.771790523659795 0.562336906389838 NA NA prediction 0.418907234539913 Functional Loss - PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145726596 chr8:145726595 nonsynonymous SNV 0.958 1 20 hm7G_associated_SNPs_10453 0 0 0 0 2 PPP1R16A chr8:145726677 5'GT 145726677 Upstream 83bp 9841 chr19 42793404 42793404 1 + A G rs112950169 42793405 + 42793385 42793425 41 GAGCTCCAGGACCCTTTGCAGCCCCTGGTGAGGGAGGTGCC GAGCTCCAGGACCCTTTGCGGCCCCTGGTGAGGGAGGTGCC < 41bp 0.745192089547244 0.53573986996961 NA NA prediction 0.418904439155268 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42793405 chr19:42793404 synonymous SNV . 0 20 hm7G_associated_SNPs_10454 0 0 1 0 1 CIC chr19:42793333 3'AG 42793333 Downstream 72bp 9842 chr17 8224231 8224231 1 + A G LUAD 8224232 + 8224212 8224252 41 CACAGGGGAACACGAAAGGAGGAGGCACCTTCGCCAGAACC CACAGGGGAACACGAAAGGGGGAGGCACCTTCGCCAGAACC < 41bp 0.721133913905878 0.511699140145212 NA NA prediction 0.418869547521334 Functional Loss - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8224232 chr17:8224231 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10455 0 0 0 0 1 ARHGEF15 chr17:8224160 3'AG 8224160 Downstream 72bp 9843 chr11 63176187 63176187 1 + A G rs146027075 63176188 + 63176168 63176208 41 ATGCAACCTTTGCTAATATAGCAGGAGCCCTGGCTCCCCTC ATGCAACCTTTGCTAATATGGCAGGAGCCCTGGCTCCCCTC < 41bp 0.714671799840976 0.505237578047014 NA NA prediction 0.418868443587924 Functional Loss - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63176188 chr11:63176187 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_10456 0 0 0 0 1 SLC22A9 chr11:63176148 3'AG 63176148 Downstream 40bp 9844 chr20 62839769 62839769 1 + A G STAD 62839770 + 62839750 62839790 41 CCGCCTGCCGAGCAGAGCCAGCTGGGCCTGGGAGAGCCAGG CCGCCTGCCGAGCAGAGCCGGCTGGGCCTGGGAGAGCCAGG < 41bp 0.709419444890452 0.487437858058315 NA NA prediction 0.418838889780903 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62839770 chr20:62839769 nonsynonymous SNV 0.214 0 20 hm7G_associated_SNPs_10457 0 0 0 0 1 MYT1 chr20:62839840 5'GT 62839840 Upstream 72bp 9845 chr1 113058764 113058764 1 + A G STAD 113058765 + 113058745 113058785 41 TACAATTCTCTCTCTAGGTAGCCGAGAGGCAGCTTTTGTAT TACAATTCTCTCTCTAGGTGGCCGAGAGGCAGCTTTTGTAT < 41bp 0.71129718242008 0.501898466772253 NA NA prediction 0.418797431295653 Functional Loss - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113058765 chr1:113058764 nonsynonymous SNV 0.956 4 20 hm7G_associated_SNPs_10460 0 0 0 0 1 WNT2B chr1:113058762 3'AG 113058762 Downstream 3bp 9846 chr1 177245380 177245380 1 + T C SARC 177245381 + 177245361 177245401 41 TGCGTGAGCGCTTTGTAGCTGCAGCACTCAGCTACATCACA TGCGTGAGCGCTTTGTAGCCGCAGCACTCAGCTACATCACA < 41bp 0.744865275427903 0.535467190190438 NA NA prediction 0.41879617047493 Functional Loss - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177245381 chr1:177245380 synonymous SNV . 0 20 hm7G_associated_SNPs_10461 0 0 0 0 1 BRINP2 chr1:177245334 3'AG 177245334 Downstream 47bp 9847 chr2 97493602 97493602 1 + A G STAD 97493603 + 97493583 97493623 41 CCACTACCTGTACCAGCGCAGCCAGCCGGTGGATTACTTCA CCACTACCTGTACCAGCGCGGCCAGCCGGTGGATTACTTCA < 41bp 0.736903471747589 0.527520922889607 NA NA prediction 0.418765097715963 Functional Loss - CNNM3 ENSG00000168763 CDS Human protein_coding chr2:97493603 chr2:97493602 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10463 0 0 1 0 1 CNNM3 chr2:97493637 5'GT 97493637 Upstream 36bp 9848 chr9 116794974 116794974 1 + T G HNSC 116794975 + 116794955 116794995 41 GCAAAGCACAAAACCACTTTGAAGAGACGAACAGCAGTTCG GCAAAGCACAAAACCACTTGGAAGAGACGAACAGCAGTTCG < 41bp 0.709370540896024 0.360524772829964 NA NA prediction 0.418741081792048 Functional Loss - ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116794975 chr9:116794974 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10464 0 0 0 0 3 ZNF618 chr9:116794925 3'AG 116794925 Downstream 50bp 9849 chr9 116794974 116794974 1 + T G HNSC 116794975 + 116794955 116794995 41 GCAAAGCACAAAACCACTTTGAAGAGACGAACAGCAGTTCG GCAAAGCACAAAACCACTTGGAAGAGACGAACAGCAGTTCG < 41bp 0.709370540896024 0.360524772829964 NA NA prediction 0.418741081792048 Functional Loss - ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116794975 chr9:116794974 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10464 0 0 0 0 3 ZNF618 chr9:116794928 3'AG 116794928 Downstream 47bp 9850 chr9 116794974 116794974 1 + T G HNSC 116794975 + 116794955 116794995 41 GCAAAGCACAAAACCACTTTGAAGAGACGAACAGCAGTTCG GCAAAGCACAAAACCACTTGGAAGAGACGAACAGCAGTTCG < 41bp 0.709370540896024 0.360524772829964 NA NA prediction 0.418741081792048 Functional Loss - ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116794975 chr9:116794974 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10464 0 0 0 0 3 ZNF618 chr9:116795008 5'GT 116795008 Upstream 35bp 9851 chr16 22269939 22269939 1 + T C UCEC 22269940 + 22269920 22269960 41 AACTCTGGAGACGAGAACATGAGCGACGTGACCTTCGACTC AACTCTGGAGACGAGAACACGAGCGACGTGACCTTCGACTC < 41bp 0.718098037511766 0.508736551154708 NA NA prediction 0.418722972714115 Functional Loss - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22269940 chr16:22269939 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_10465 0 0 1 0 1 EEF2K chr16:22270016 5'GT 22270016 Upstream 78bp 9852 chr13 96416196 96416196 1 + T G HNSC 96416197 + 96416177 96416217 41 GCCTATTTGATAGAGGAAATGTATGATGAAGGTAAATCTTT GCCTATTTGATAGAGGAAAGGTATGATGAAGGTAAATCTTT < 41bp 0.709350290459659 0.396473263849964 NA NA prediction 0.418700580919317 Functional Loss - DNAJC3 ENSG00000102580 CDS Human protein_coding chr13:96416197 chr13:96416196 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_10466 0 0 1 0 1 DNAJC3 chr13:96416207 5'GT 96416207 Upstream 12bp 9853 chr19 16874748 16874748 1 + A G UCEC 16874749 + 16874729 16874769 41 CTGGAGGAGCTGAAACAGGAGGTTCTGGGTAAGGGCTGCCC CTGGAGGAGCTGAAACAGGGGGTTCTGGGTAAGGGCTGCCC < 41bp 0.734926869227965 0.525599181530569 NA NA prediction 0.418655375394793 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16874749 chr19:16874748 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_10467 0 0 0 0 1 NWD1 chr19:16874756 5'GT 16874756 Upstream 9bp 9854 chr2 55130227 55130227 1 + T C UCEC 55130228 + 55130208 55130248 41 ATGGGAAAGCCTTAGCGGTTGGCTTGAACGATGGGAGTTTC ATGGGAAAGCCTTAGCGGTCGGCTTGAACGATGGGAGTTTC < 41bp 0.709317791742244 0.498261194596983 NA NA prediction 0.418635583484488 Functional Loss - EML6 ENSG00000214595 CDS Human protein_coding chr2:55130228 chr2:55130227 synonymous SNV . 0 20 hm7G_associated_SNPs_10469 0 0 0 0 1 EML6 chr2:55130181 3'AG 55130181 Downstream 47bp 9855 chrX 152835186 152835186 1 + T C LAML 152835187 + 152835167 152835207 41 CTACTCACGCAATTCTCTCTGCTGCCAATCCTACCAGTGCT CTACTCACGCAATTCTCTCCGCTGCCAATCCTACCAGTGCT < 41bp 0.709302946070612 0.499199710595347 NA NA prediction 0.418605892141223 Functional Loss - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152835187 chrX:152835186 synonymous SNV . 0 20 hm7G_associated_SNPs_10470 0 0 0 0 1 ATP2B3 chrX:152835214 5'GT 152835214 Upstream 29bp 9856 chr2 27000925 27000925 1 + T G PAAD 27000926 + 27000906 27000946 41 CCAGGCCTCTTTGGCTTTGTGATCCTCTCCCTGCTGCTGGT CCAGGCCTCTTTGGCTTTGGGATCCTCTCCCTGCTGCTGGT < 41bp 0.709277142100307 0.37478427311624 NA NA prediction 0.418554284200613 Functional Loss - SLC35F6 ENSG00000213699 CDS Human protein_coding chr2:27000926 chr2:27000925 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10472 0 0 1 0 1 SLC35F6 chr2:27000910 3'AG 27000910 Downstream 16bp 9857 chrX 103420305 103420305 1 + T C UCEC 103420306 + 103420286 103420326 41 CGTGTTGTGTTTTTGAAGGTGGAACCTAACTTCTTGTGGAA CGTGTTGTGTTTTTGAAGGCGGAACCTAACTTCTTGTGGAA < 41bp 0.709238328455069 0.498956758679271 NA NA prediction 0.418476656910139 Functional Loss - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103420306 chrX:103420305 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10474 0 0 1 0 1 FAM199X chrX:103420304 3'AG 103420304 Downstream 2bp 9858 chr7 105671267 105671267 1 + T C rs10270308 105671268 + 105671248 105671288 41 AGATGAACACTATCTTTGATGGAGAAGCCATAGATCCAGGT AGATGAACACTATCTTTGACGGAGAAGCCATAGATCCAGGT < 41bp 0.710442430597464 0.501210085582233 NA NA prediction 0.418464690030462 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105671268 chr7:105671267 synonymous SNV . 0 20 hm7G_associated_SNPs_10475 0 1 0 2 2 CDHR3 chr7:105671238 3'AG 105671238 Downstream 30bp 9859 chr7 105671267 105671267 1 + T C rs10270308 105671268 + 105671248 105671288 41 AGATGAACACTATCTTTGATGGAGAAGCCATAGATCCAGGT AGATGAACACTATCTTTGACGGAGAAGCCATAGATCCAGGT < 41bp 0.710442430597464 0.501210085582233 NA NA prediction 0.418464690030462 Functional Loss - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105671268 chr7:105671267 synonymous SNV . 0 20 hm7G_associated_SNPs_10475 0 1 0 2 2 CDHR3 chr7:105671286 5'GT 105671286 Upstream 20bp 9860 chr16 30522394 30522394 1 + T C GBM 30522395 + 30522375 30522415 41 AATGAGGACTCAGACCTCCTGGAGGACAACTCAGCCACTAC AATGAGGACTCAGACCTCCCGGAGGACAACTCAGCCACTAC < 41bp 0.717270613462162 0.508040654927303 NA NA prediction 0.418459917069718 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522395 chr16:30522394 nonsynonymous SNV 0.940 2 20 hm7G_associated_SNPs_10476 0 0 0 0 2 ITGAL chr16:30522371 3'AG 30522371 Downstream 24bp 9861 chr16 30522394 30522394 1 + T C GBM 30522395 + 30522375 30522415 41 AATGAGGACTCAGACCTCCTGGAGGACAACTCAGCCACTAC AATGAGGACTCAGACCTCCCGGAGGACAACTCAGCCACTAC < 41bp 0.717270613462162 0.508040654927303 NA NA prediction 0.418459917069718 Functional Loss - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522395 chr16:30522394 nonsynonymous SNV 0.940 2 20 hm7G_associated_SNPs_10476 0 0 0 0 2 ITGAL chr16:30522457 5'GT 30522457 Upstream 64bp 9862 chr11 9608064 9608064 1 + T C BLCA 9608065 + 9608045 9608085 41 TGGTATGTGCTGCTGGTGCTGAACCTCTTCCGAGAAATGGA TGGTATGTGCTGCTGGTGCCGAACCTCTTCCGAGAAATGGA < 41bp 0.711039678644252 0.501816304663265 NA NA prediction 0.418446747961974 Functional Loss - WEE1 ENSG00000166483 CDS Human protein_coding chr11:9608065 chr11:9608064 synonymous SNV . 0 20 hm7G_associated_SNPs_10478 0 0 1 0 1 WEE1 chr11:9607996 3'AG 9607996 Downstream 69bp 9863 chr18 48248453 48248453 1 + T C rs16952476 48248454 + 48248434 48248474 41 CTCTGCGCAAGCTGCTCCCTGAAGTGAACAGTGAAGGTACC CTCTGCGCAAGCTGCTCCCCGAAGTGAACAGTGAAGGTACC < 41bp 0.715939363751038 0.506720509617335 NA NA prediction 0.418437708267405 Functional Loss - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48248454 chr18:48248453 synonymous SNV . 0 20 hm7G_associated_SNPs_10479 0 0 0 0 1 MAPK4 chr18:48248469 5'GT 48248469 Upstream 17bp 9864 chr1 168278029 168278029 1 + T C STAD 168278030 + 168278010 168278050 41 TGCAAGTTTTCTCGGGACCTGACAGCTGGACTTCCTTATCC TGCAAGTTTTCTCGGGACCCGACAGCTGGACTTCCTTATCC < 41bp 0.722511460668434 0.513307491083609 NA NA prediction 0.41840793916965 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168278030 chr1:168278029 synonymous SNV . 0 20 hm7G_associated_SNPs_10481 0 0 1 0 2 TBX19 chr1:168277980 3'AG 168277980 Downstream 50bp 9865 chr1 168278029 168278029 1 + T C STAD 168278030 + 168278010 168278050 41 TGCAAGTTTTCTCGGGACCTGACAGCTGGACTTCCTTATCC TGCAAGTTTTCTCGGGACCCGACAGCTGGACTTCCTTATCC < 41bp 0.722511460668434 0.513307491083609 NA NA prediction 0.41840793916965 Functional Loss - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168278030 chr1:168278029 synonymous SNV . 0 20 hm7G_associated_SNPs_10481 0 0 1 0 2 TBX19 chr1:168278115 5'GT 168278115 Upstream 87bp 9866 chr3 50036883 50036883 1 + T C UCEC 50036884 + 50036864 50036904 41 TGTCCCCAGGTTACGACTATGGCTATGTCTGCGTGGAGTTT TGTCCCCAGGTTACGACTACGGCTATGTCTGCGTGGAGTTT < 41bp 0.7179746181971 0.508787213393828 NA NA prediction 0.418374809606545 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50036884 chr3:50036883 synonymous SNV . 0 20 hm7G_associated_SNPs_10482 0 0 1 0 2 RBM6 chr3:50036873 3'AG 50036873 Downstream 11bp 9867 chr3 50036883 50036883 1 + T C UCEC 50036884 + 50036864 50036904 41 TGTCCCCAGGTTACGACTATGGCTATGTCTGCGTGGAGTTT TGTCCCCAGGTTACGACTACGGCTATGTCTGCGTGGAGTTT < 41bp 0.7179746181971 0.508787213393828 NA NA prediction 0.418374809606545 Functional Loss - RBM6 ENSG00000004534 CDS Human protein_coding chr3:50036884 chr3:50036883 synonymous SNV . 0 20 hm7G_associated_SNPs_10482 0 0 1 0 2 RBM6 chr3:50036946 5'GT 50036946 Upstream 64bp 9868 chr11 95555716 95555716 1 + T C UCEC 95555717 + 95555697 95555737 41 ATTATAGATTATGCTTGGGTGATATGCCATTTGTAGCTGGG ATTATAGATTATGCTTGGGCGATATGCCATTTGTAGCTGGG < 41bp 0.721054229910973 0.51187002809092 NA NA prediction 0.418368403640105 Functional Loss - CEP57 ENSG00000166037 CDS Human protein_coding chr11:95555717 chr11:95555716 synonymous SNV . 0 20 hm7G_associated_SNPs_10483 0 0 1 0 2 CEP57 chr11:95555663 3'AG 95555663 Downstream 54bp 9869 chr11 95555716 95555716 1 + T C UCEC 95555717 + 95555697 95555737 41 ATTATAGATTATGCTTGGGTGATATGCCATTTGTAGCTGGG ATTATAGATTATGCTTGGGCGATATGCCATTTGTAGCTGGG < 41bp 0.721054229910973 0.51187002809092 NA NA prediction 0.418368403640105 Functional Loss - CEP57 ENSG00000166037 CDS Human protein_coding chr11:95555717 chr11:95555716 synonymous SNV . 0 20 hm7G_associated_SNPs_10483 0 0 1 0 2 CEP57 chr11:95555740 5'GT 95555740 Upstream 25bp 9870 chr6 39866712 39866712 1 + T C COAD 39866713 + 39866693 39866733 41 GGCCTGAGAGCGGTGGAGGTGGTGAGTACCTTGTCAGTGCC GGCCTGAGAGCGGTGGAGGCGGTGAGTACCTTGTCAGTGCC < 41bp 0.709146470989406 0.491780138121114 NA NA prediction 0.418292941978812 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39866713 chr6:39866712 nonsynonymous SNV 0.851 0 20 hm7G_associated_SNPs_10484 0 0 0 0 2 DAAM2 chr6:39866653 3'AG 39866653 Downstream 60bp 9871 chr6 39866712 39866712 1 + T C COAD 39866713 + 39866693 39866733 41 GGCCTGAGAGCGGTGGAGGTGGTGAGTACCTTGTCAGTGCC GGCCTGAGAGCGGTGGAGGCGGTGAGTACCTTGTCAGTGCC < 41bp 0.709146470989406 0.491780138121114 NA NA prediction 0.418292941978812 Functional Loss - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39866713 chr6:39866712 nonsynonymous SNV 0.851 0 20 hm7G_associated_SNPs_10484 0 0 0 0 2 DAAM2 chr6:39866713 5'GT 39866713 Upstream 2bp 9872 chr14 94700953 94700953 1 + T C rs116260409 94700954 + 94700934 94700974 41 TCTGTCAAGATGTAGAATATGAAGTTCGATCTTGTATGTGT TCTGTCAAGATGTAGAATACGAAGTTCGATCTTGTATGTGT < 41bp 0.715048355870605 0.505925659315264 NA NA prediction 0.418245393110682 Functional Loss - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94700954 chr14:94700953 synonymous SNV . 0 20 hm7G_associated_SNPs_10486 0 0 1 0 2 PPP4R4 chr14:94700899 3'AG 94700899 Downstream 55bp 9873 chr14 94700953 94700953 1 + T C rs116260409 94700954 + 94700934 94700974 41 TCTGTCAAGATGTAGAATATGAAGTTCGATCTTGTATGTGT TCTGTCAAGATGTAGAATACGAAGTTCGATCTTGTATGTGT < 41bp 0.715048355870605 0.505925659315264 NA NA prediction 0.418245393110682 Functional Loss - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94700954 chr14:94700953 synonymous SNV . 0 20 hm7G_associated_SNPs_10486 0 0 1 0 2 PPP4R4 chr14:94701006 5'GT 94701006 Upstream 54bp 9874 chr14 105351711 105351711 1 + T C COAD 105351712 + 105351692 105351732 41 TTTCCTCTTGGCAGGTCTTTGGGGTGTTGGAGTCCCCTGAA TTTCCTCTTGGCAGGTCTTCGGGGTGTTGGAGTCCCCTGAA < 41bp 0.709108304574788 0.499645483066187 NA NA prediction 0.418216609149577 Functional Loss - CEP170B ENSG00000099814 CDS Human protein_coding chr14:105351712 chr14:105351711 synonymous SNV . 0 20 hm7G_associated_SNPs_10489 0 0 1 0 1 CEP170B chr14:105351706 3'AG 105351706 Downstream 6bp 9875 chr17 2270594 2270594 1 + A G UCEC 2270595 + 2270575 2270615 41 CTACCACCACCTAGCGGCCAGCCGCGCGGCCTCGGTGGACG CTACCACCACCTAGCGGCCGGCCGCGCGGCCTCGGTGGACG < 41bp 0.775868548447696 0.566769487367567 NA NA prediction 0.418198122160259 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2270595 chr17:2270594 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10490 0 0 0 0 1 SGSM2 chr17:2270565 3'AG 2270565 Downstream 30bp 9876 chr9 104079657 104079657 1 + T C UCEC 104079658 + 104079638 104079678 41 ATCCTGCAGGGAATGTGTGTGGTTCATAACTTTAAAGGAAC ATCCTGCAGGGAATGTGTGCGGTTCATAACTTTAAAGGAAC < 41bp 0.709093289095108 0.497628822786276 NA NA prediction 0.418186578190216 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104079658 chr9:104079657 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10491 0 0 0 0 1 PLPPR1 chr9:104079647 3'AG 104079647 Downstream 11bp 9877 chr10 89487056 89487056 1 + T C UCEC 89487057 + 89487037 89487077 41 ACAGATGGCGTGATCAACATGAGCATCCCCATTGTACTGCC ACAGATGGCGTGATCAACACGAGCATCCCCATTGTACTGCC < 41bp 0.731814261436665 0.522732694088132 NA NA prediction 0.418163134697065 Functional Loss - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89487057 chr10:89487056 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_10493 0 0 0 0 1 PAPSS2 chr10:89487041 3'AG 89487041 Downstream 16bp 9878 chr1 74665364 74665364 1 + T C LUSC 74665365 + 74665345 74665385 41 TAGGCAAACTTGTAGCACGTGGAGAATTCTGGGACATAGTT TAGGCAAACTTGTAGCACGCGGAGAATTCTGGGACATAGTT < 41bp 0.712407211217842 0.503338320137206 NA NA prediction 0.418137782161273 Functional Loss - FPGT;FPGT-TNNI3K ENSG00000116783;ENSG00000254685;ENSG00000259030 CDS Human other chr1:74665365 chr1:74665364 synonymous SNV . 0 20 hm7G_associated_SNPs_10494 0 0 1 0 1 FPGT;FPGT-TNNI3K chr1:74665348 3'AG 74665348 Downstream 17bp 9879 chr9 132980159 132980159 1 + A G UCEC 132980160 + 132980140 132980180 41 GTGGGCAGCTGGATGCGGCAGGCTTCCAGAAGATCTACAAG GTGGGCAGCTGGATGCGGCGGGCTTCCAGAAGATCTACAAG < 41bp 0.75327397555769 0.544208773900358 NA NA prediction 0.418130403314663 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132980160 chr9:132980159 synonymous SNV . 0 20 hm7G_associated_SNPs_10496 0 0 0 0 2 NCS1 chr9:132980111 3'AG 132980111 Downstream 49bp 9880 chr9 132980159 132980159 1 + A G UCEC 132980160 + 132980140 132980180 41 GTGGGCAGCTGGATGCGGCAGGCTTCCAGAAGATCTACAAG GTGGGCAGCTGGATGCGGCGGGCTTCCAGAAGATCTACAAG < 41bp 0.75327397555769 0.544208773900358 NA NA prediction 0.418130403314663 Functional Loss - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132980160 chr9:132980159 synonymous SNV . 0 20 hm7G_associated_SNPs_10496 0 0 0 0 2 NCS1 chr9:132980249 5'GT 132980249 Upstream 91bp 9881 chr5 110461423 110461423 1 + T G SKCM 110461424 + 110461404 110461444 41 ATGCAGAGCTTCTTGAAAATGATTGGGATGATGCTGGACAG ATGCAGAGCTTCTTGAAAAGGATTGGGATGATGCTGGACAG < 41bp 0.893662019641742 0.684597680739652 NA NA prediction 0.41812867780418 Functional Loss - WDR36 ENSG00000134987 CDS Human protein_coding chr5:110461424 chr5:110461423 nonsynonymous SNV 0.867 3 20 hm7G_associated_SNPs_10497 0 0 1 0 1 WDR36 chr5:110461493 5'GT 110461493 Upstream 71bp 9882 chr8 97299327 97299327 1 + T C COAD 97299328 + 97299308 97299348 41 GGTTAAATCTCTAATGTATTGGCTAGATCCAAATCTTCGAT GGTTAAATCTCTAATGTATCGGCTAGATCCAAATCTTCGAT < 41bp 0.721542993559002 0.512489487958473 NA NA prediction 0.418107011201057 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97299328 chr8:97299327 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_10498 0 0 1 0 2 PTDSS1 chr8:97299250 3'AG 97299250 Downstream 78bp 9883 chr8 97299327 97299327 1 + T C COAD 97299328 + 97299308 97299348 41 GGTTAAATCTCTAATGTATTGGCTAGATCCAAATCTTCGAT GGTTAAATCTCTAATGTATCGGCTAGATCCAAATCTTCGAT < 41bp 0.721542993559002 0.512489487958473 NA NA prediction 0.418107011201057 Functional Loss - PTDSS1 ENSG00000156471 CDS Human protein_coding chr8:97299328 chr8:97299327 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_10498 0 0 1 0 2 PTDSS1 chr8:97299374 5'GT 97299374 Upstream 48bp 9884 chr19 49867878 49867878 1 + T C HNSC 49867879 + 49867859 49867899 41 AGGCGGCATCTGCTGGTCCTGCTGCTGCTCCTCTCTACCCT AGGCGGCATCTGCTGGTCCCGCTGCTGCTCCTCTCTACCCT < 41bp 0.721710232476514 0.512690534463913 NA NA prediction 0.418039396025203 Functional Loss - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49867879 chr19:49867878 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_10502 0 0 0 0 1 DKKL1 chr19:49867839 3'AG 49867839 Downstream 40bp 9885 chr12 120639200 120639200 1 + T G rs377204353 120639201 + 120639181 120639221 41 TCGGAGTCCCGGTTCCCTGTGCCACCTGGCGAGCTCAGCAA TCGGAGTCCCGGTTCCCTGGGCCACCTGGCGAGCTCAGCAA < 41bp 0.709013347070002 0.386062760516108 NA NA prediction 0.418026694140005 Functional Loss - PXN-AS1 ENSG00000255857 ncRNA_exonic Human antisense chr12:120639201 chr12:120639200 . . 0 20 hm7G_associated_SNPs_10504 0 0 1 0 1 PXN-AS1 chr12:120639229 5'GT 120639229 Upstream 30bp 9886 chr3 127327758 127327758 1 + A G LUSC 127327759 + 127327739 127327779 41 TCTTTGCCACTGTCATCCTAGCCAACCACGTGGCCAAGAAG TCTTTGCCACTGTCATCCTGGCCAACCACGTGGCCAAGAAG < 41bp 0.750017860550349 0.541017540482695 NA NA prediction 0.418000640135309 Functional Loss - MCM2 ENSG00000073111 CDS Human protein_coding chr3:127327759 chr3:127327758 synonymous SNV . 0 20 hm7G_associated_SNPs_10505 0 0 1 0 1 MCM2 chr3:127327675 3'AG 127327675 Downstream 84bp 9887 chr16 30095013 30095013 1 + A G GBM 30095014 + 30094994 30095034 41 GGCCTCTCCCCCTCCATCCAGACCCTGGATCAGATTCGGAC GGCCTCTCCCCCTCCATCCGGACCCTGGATCAGATTCGGAC < 41bp 0.708998491940403 0.497452868943362 NA NA prediction 0.417996983880806 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095014 chr16:30095013 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10506 0 0 1 1 2 PPP4C chr16:30094976 3'AG 30094976 Downstream 38bp 9888 chr16 30095013 30095013 1 + A G GBM 30095014 + 30094994 30095034 41 GGCCTCTCCCCCTCCATCCAGACCCTGGATCAGATTCGGAC GGCCTCTCCCCCTCCATCCGGACCCTGGATCAGATTCGGAC < 41bp 0.708998491940403 0.497452868943362 NA NA prediction 0.417996983880806 Functional Loss - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30095014 chr16:30095013 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10506 0 0 1 1 2 PPP4C chr16:30095102 5'GT 30095102 Upstream 90bp 9889 chr9 97207409 97207409 1 + T G UCEC 97207410 + 97207390 97207430 41 GAATCTCTGCCTGAGAAAATGAGACCGGTTTCCTGGGGAGC GAATCTCTGCCTGAGAAAAGGAGACCGGTTTCCTGGGGAGC < 41bp 0.906136666122076 0.697142978123427 NA NA prediction 0.4179873759973 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97207410 chr9:97207409 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10507 0 0 1 0 1 MFSD14B chr9:97207464 5'GT 97207464 Upstream 56bp 9890 chr4 628573 628573 1 + A G COAD 628574 + 628554 628594 41 TCGTGGCGGTGATCATGGCAGTGAACAAGCTCAACGGCCCA TCGTGGCGGTGATCATGGCGGTGAACAAGCTCAACGGCCCA < 41bp 0.711344359550933 0.502358393640154 NA NA prediction 0.417971931821557 Functional Loss - PDE6B ENSG00000133256 CDS Human protein_coding chr4:628574 chr4:628573 synonymous SNV . 0 20 hm7G_associated_SNPs_10509 0 0 0 0 1 PDE6B chr4:628618 5'GT 628618 Upstream 46bp 9891 chr10 54074757 54074757 1 + A G rs2241529 54074758 + 54074738 54074778 41 CCACCCGCGGAGGGGACGCAGGCGTGCAAATCTGTCTCGCC CCACCCGCGGAGGGGACGCGGGCGTGCAAATCTGTCTCGCC < 41bp 0.738183378129931 0.529200293363617 NA NA prediction 0.417966169532626 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074758 chr10:54074757 synonymous SNV . 0 20 hm7G_associated_SNPs_10511 0 0 1 0 2 DKK1 chr10:54074683 3'AG 54074683 Downstream 75bp 9892 chr10 54074757 54074757 1 + A G rs2241529 54074758 + 54074738 54074778 41 CCACCCGCGGAGGGGACGCAGGCGTGCAAATCTGTCTCGCC CCACCCGCGGAGGGGACGCGGGCGTGCAAATCTGTCTCGCC < 41bp 0.738183378129931 0.529200293363617 NA NA prediction 0.417966169532626 Functional Loss - DKK1 ENSG00000107984 CDS Human protein_coding chr10:54074758 chr10:54074757 synonymous SNV . 0 20 hm7G_associated_SNPs_10511 0 0 1 0 2 DKK1 chr10:54074845 5'GT 54074845 Upstream 89bp 9893 chrX 69455948 69455948 1 + T G ESCA 69455949 + 69455929 69455969 41 TTCGGCCTGGGTAAGGAACTGGTGTGTCTGGACCCACATCA TTCGGCCTGGGTAAGGAACGGGTGTGTCTGGACCCACATCA < 41bp 0.90892133284633 0.699949362599517 NA NA prediction 0.417943940493626 Functional Loss - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69455949 chrX:69455948 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_10512 0 0 0 0 2 AWAT1 chrX:69455919 3'AG 69455919 Downstream 30bp 9894 chrX 69455948 69455948 1 + T G ESCA 69455949 + 69455929 69455969 41 TTCGGCCTGGGTAAGGAACTGGTGTGTCTGGACCCACATCA TTCGGCCTGGGTAAGGAACGGGTGTGTCTGGACCCACATCA < 41bp 0.90892133284633 0.699949362599517 NA NA prediction 0.417943940493626 Functional Loss - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69455949 chrX:69455948 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_10512 0 0 0 0 2 AWAT1 chrX:69455989 5'GT 69455989 Upstream 42bp 9895 chr10 6262658 6262658 1 + A G OV 6262659 + 6262639 6262679 41 GGTGATTGACGTGGGCCGGAGGTTCCTGGTGAACCGGGTGC GGTGATTGACGTGGGCCGGGGGTTCCTGGTGAACCGGGTGC < 41bp 0.762137170892406 0.5531807303347 NA NA prediction 0.417912881115411 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262659 chr10:6262658 nonsynonymous SNV 0.877 4 20 hm7G_associated_SNPs_10513 0 0 1 0 1 PFKFB3 chr10:6262621 3'AG 6262621 Downstream 38bp 9896 chr17 72233605 72233605 1 + T C rs115870886 72233606 + 72233586 72233626 41 GTGTGGAGGGAGGTCACCATGGAGCTGACCAAGCTATCCGA GTGTGGAGGGAGGTCACCACGGAGCTGACCAAGCTATCCGA < 41bp 0.739329418097298 0.530373541802808 NA NA prediction 0.41791175258898 Functional Loss - TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72233606 chr17:72233605 nonsynonymous SNV 0.098 0 20 hm7G_associated_SNPs_10514 0 0 0 0 1 TTYH2 chr17:72233653 5'GT 72233653 Upstream 49bp 9897 chr14 73717661 73717661 1 + A G STAD 73717662 + 73717642 73717682 41 TCGTCCAAGCAGGAGGACAAGTGTCTGCGGTGTGGGGGTGA TCGTCCAAGCAGGAGGACAGGTGTCTGCGGTGTGGGGGTGA < 41bp 0.729554399138262 0.520599631880454 NA NA prediction 0.417909534515615 Functional Loss - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73717662 chr14:73717661 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10515 0 0 0 0 2 PAPLN chr14:73717615 3'AG 73717615 Downstream 47bp 9898 chr14 73717661 73717661 1 + A G STAD 73717662 + 73717642 73717682 41 TCGTCCAAGCAGGAGGACAAGTGTCTGCGGTGTGGGGGTGA TCGTCCAAGCAGGAGGACAGGTGTCTGCGGTGTGGGGGTGA < 41bp 0.729554399138262 0.520599631880454 NA NA prediction 0.417909534515615 Functional Loss - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73717662 chr14:73717661 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10515 0 0 0 0 2 PAPLN chr14:73717738 5'GT 73717738 Upstream 78bp 9899 chr9 101891297 101891297 1 + T C BLCA 101891298 + 101891278 101891318 41 GAGATAGGCCGTTTGTATGTGCACCCTCTTCAAAAACTGGG GAGATAGGCCGTTTGTATGCGCACCCTCTTCAAAAACTGGG < 41bp 0.727810509534124 0.518870477793452 NA NA prediction 0.417880063481345 Functional Loss - TGFBR1 ENSG00000106799 CDS Human protein_coding chr9:101891298 chr9:101891297 synonymous SNV . 0 20 hm7G_associated_SNPs_10516 0 0 1 0 1 TGFBR1 chr9:101891382 5'GT 101891382 Upstream 86bp 9900 chr2 43968088 43968088 1 + T C UCEC 43968089 + 43968069 43968109 41 GCTTCTCCCTGCCCAGGGCTGGCAGCTCTTGGCACTCTGCG GCTTCTCCCTGCCCAGGGCCGGCAGCTCTTGGCACTCTGCG < 41bp 0.715134146064552 0.506205917735104 NA NA prediction 0.417856456658895 Functional Loss - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43968089 chr2:43968088 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_10518 0 0 0 0 2 PLEKHH2 chr2:43968085 3'AG 43968085 Downstream 4bp 9901 chr2 43968088 43968088 1 + T C UCEC 43968089 + 43968069 43968109 41 GCTTCTCCCTGCCCAGGGCTGGCAGCTCTTGGCACTCTGCG GCTTCTCCCTGCCCAGGGCCGGCAGCTCTTGGCACTCTGCG < 41bp 0.715134146064552 0.506205917735104 NA NA prediction 0.417856456658895 Functional Loss - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43968089 chr2:43968088 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_10518 0 0 0 0 2 PLEKHH2 chr2:43968182 5'GT 43968182 Upstream 95bp 9902 chr11 198284 198284 1 + A G HNSC 198285 + 198265 198305 41 CCCGGACAAAGGCATTCCGAGTGGACAGCACCCCAGGTCCG CCCGGACAAAGGCATTCCGGGTGGACAGCACCCCAGGTCCG < 41bp 0.708928028211474 0.49162112295739 NA NA prediction 0.417856056422948 Functional Loss - ODF3 ENSG00000177947 CDS Human protein_coding chr11:198285 chr11:198284 synonymous SNV . 0 20 hm7G_associated_SNPs_10519 0 0 0 0 2 ODF3 chr11:198199 3'AG 198199 Downstream 86bp 9903 chr11 198284 198284 1 + A G HNSC 198285 + 198265 198305 41 CCCGGACAAAGGCATTCCGAGTGGACAGCACCCCAGGTCCG CCCGGACAAAGGCATTCCGGGTGGACAGCACCCCAGGTCCG < 41bp 0.708928028211474 0.49162112295739 NA NA prediction 0.417856056422948 Functional Loss - ODF3 ENSG00000177947 CDS Human protein_coding chr11:198285 chr11:198284 synonymous SNV . 0 20 hm7G_associated_SNPs_10519 0 0 0 0 2 ODF3 chr11:198300 5'GT 198300 Upstream 17bp 9904 chr18 8819124 8819124 1 + T C UCEC 8819125 + 8819105 8819145 41 CCGTTTGAAGACCGGCCGCTGTCCAAGCTGAAGGAGTCGGA CCGTTTGAAGACCGGCCGCCGTCCAAGCTGAAGGAGTCGGA < 41bp 0.740240186402889 0.531316008337162 NA NA prediction 0.417848356131455 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819125 chr18:8819124 nonsynonymous SNV 0.724 3 20 hm7G_associated_SNPs_10520 0 0 0 0 1 MTCL1 chr18:8819045 3'AG 8819045 Downstream 80bp 9905 chr19 54933368 54933368 1 + T C UCEC 54933369 + 54933349 54933389 41 CTGTCCTATCCCCAGGTGTTGGAGACGGTGGAGAGGCTGGG CTGTCCTATCCCCAGGTGTCGGAGACGGTGGAGAGGCTGGG < 41bp 0.710295468244548 0.501378493298889 NA NA prediction 0.417833949891318 Functional Loss - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54933369 chr19:54933368 nonsynonymous SNV 0.598 0 20 hm7G_associated_SNPs_10521 0 0 1 0 1 TTYH1 chr19:54933364 3'AG 54933364 Downstream 5bp 9906 chr10 102116358 102116358 1 + T C UCEC 102116359 + 102116339 102116379 41 TGCCCTGGTATTTCTGGGGTGAAACTTTTCAAAACAGTGTG TGCCCTGGTATTTCTGGGGCGAAACTTTTCAAAACAGTGTG < 41bp 0.732930744480684 0.524017855873739 NA NA prediction 0.417825777213891 Functional Loss - SCD ENSG00000099194 CDS Human protein_coding chr10:102116359 chr10:102116358 synonymous SNV . 0 20 hm7G_associated_SNPs_10522 0 0 1 0 1 SCD chr10:102116289 3'AG 102116289 Downstream 70bp 9907 chr17 42222618 42222618 1 + T G SKCM 42222619 + 42222599 42222639 41 TGGAAGAGGAGTTTGAAGATGAGGTAGGGAAGTGTTGATGA TGGAAGAGGAGTTTGAAGAGGAGGTAGGGAAGTGTTGATGA < 41bp 0.902626671985391 0.69371384422408 NA NA prediction 0.417825655522624 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42222619 chr17:42222618 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10523 0 0 0 0 2 C17orf53 chr17:42222571 3'AG 42222571 Downstream 48bp 9908 chr17 42222618 42222618 1 + T G SKCM 42222619 + 42222599 42222639 41 TGGAAGAGGAGTTTGAAGATGAGGTAGGGAAGTGTTGATGA TGGAAGAGGAGTTTGAAGAGGAGGTAGGGAAGTGTTGATGA < 41bp 0.902626671985391 0.69371384422408 NA NA prediction 0.417825655522624 Functional Loss - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42222619 chr17:42222618 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10523 0 0 0 0 2 C17orf53 chr17:42222621 5'GT 42222621 Upstream 4bp 9909 chr11 597477 597477 1 + A G rs367758132 597478 + 597458 597498 41 GCAGGCTTCGGCCTCGAGCAGGTAGGACCCGGGCGATAGCC GCAGGCTTCGGCCTCGAGCGGGTAGGACCCGGGCGATAGCC < 41bp 0.781628851881169 0.572719211463949 NA NA prediction 0.417819280834441 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:597478 chr11:597477 synonymous SNV . 0 20 hm7G_associated_SNPs_10524 0 0 1 0 2 PHRF1 chr11:597395 3'AG 597395 Downstream 83bp 9910 chr11 597477 597477 1 + A G rs367758132 597478 + 597458 597498 41 GCAGGCTTCGGCCTCGAGCAGGTAGGACCCGGGCGATAGCC GCAGGCTTCGGCCTCGAGCGGGTAGGACCCGGGCGATAGCC < 41bp 0.781628851881169 0.572719211463949 NA NA prediction 0.417819280834441 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:597478 chr11:597477 synonymous SNV . 0 20 hm7G_associated_SNPs_10524 0 0 1 0 2 PHRF1 chr11:597570 5'GT 597570 Upstream 94bp 9911 chr21 47544618 47544618 1 + A G UCEC 47544619 + 47544599 47544639 41 GGGGGCCAAGAGGAGTCCCAGGACCCGAGGTAGGTTGGTGG GGGGGCCAAGAGGAGTCCCGGGACCCGAGGTAGGTTGGTGG < 41bp 0.772056415766925 0.563151993885846 NA NA prediction 0.417808843762157 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47544619 chr21:47544618 synonymous SNV . 0 20 hm7G_associated_SNPs_10525 0 0 0 0 2 COL6A2 chr21:47544565 3'AG 47544565 Downstream 54bp 9912 chr21 47544618 47544618 1 + A G UCEC 47544619 + 47544599 47544639 41 GGGGGCCAAGAGGAGTCCCAGGACCCGAGGTAGGTTGGTGG GGGGGCCAAGAGGAGTCCCGGGACCCGAGGTAGGTTGGTGG < 41bp 0.772056415766925 0.563151993885846 NA NA prediction 0.417808843762157 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47544619 chr21:47544618 synonymous SNV . 0 20 hm7G_associated_SNPs_10525 0 0 0 0 2 COL6A2 chr21:47544627 5'GT 47544627 Upstream 10bp 9913 chr11 22294457 22294457 1 + T G LUAD 22294458 + 22294438 22294478 41 CCACTCAATACAGGAGAACTGTAGCTTCTAAAGCTCATAGC CCACTCAATACAGGAGAACGGTAGCTTCTAAAGCTCATAGC < 41bp 0.708900271972024 0.384732471759438 NA NA prediction 0.417800543944048 Functional Loss - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22294458 chr11:22294457 synonymous SNV . 0 20 hm7G_associated_SNPs_10526 0 0 0 0 1 ANO5 chr11:22294535 5'GT 22294535 Upstream 79bp 9914 chr1 110559349 110559349 1 + T C UCEC 110559350 + 110559330 110559370 41 TGGTGGTGTGTGGCTATGGTGAGGTAAATAGCTGGGTCTCA TGGTGGTGTGTGGCTATGGCGAGGTAAATAGCTGGGTCTCA < 41bp 0.729123316883095 0.520229928245048 NA NA prediction 0.417786777276092 Functional Loss - AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110559350 chr1:110559349 synonymous SNV . 0 20 hm7G_associated_SNPs_10527 0 0 1 0 2 AHCYL1 chr1:110559289 3'AG 110559289 Downstream 61bp 9915 chr1 110559349 110559349 1 + T C UCEC 110559350 + 110559330 110559370 41 TGGTGGTGTGTGGCTATGGTGAGGTAAATAGCTGGGTCTCA TGGTGGTGTGTGGCTATGGCGAGGTAAATAGCTGGGTCTCA < 41bp 0.729123316883095 0.520229928245048 NA NA prediction 0.417786777276092 Functional Loss - AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110559350 chr1:110559349 synonymous SNV . 0 20 hm7G_associated_SNPs_10527 0 0 1 0 2 AHCYL1 chr1:110559352 5'GT 110559352 Upstream 4bp 9916 chr15 22866927 22866927 1 + T C rs536316130 22866928 + 22866908 22866948 41 GTGGACATTGTTATAAGTTTGGAATGTCAAAAAATTTATAA GTGGACATTGTTATAAGTTCGGAATGTCAAAAAATTTATAA < 41bp 0.711834095013949 0.502941822304542 NA NA prediction 0.417784545418815 Functional Loss - TUBGCP5 ENSG00000153575 CDS Human other chr15:22866928 chr15:22866927 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10528 0 0 1 0 2 TUBGCP5 chr15:22866896 3'AG 22866896 Downstream 32bp 9917 chr15 22866927 22866927 1 + T C rs536316130 22866928 + 22866908 22866948 41 GTGGACATTGTTATAAGTTTGGAATGTCAAAAAATTTATAA GTGGACATTGTTATAAGTTCGGAATGTCAAAAAATTTATAA < 41bp 0.711834095013949 0.502941822304542 NA NA prediction 0.417784545418815 Functional Loss - TUBGCP5 ENSG00000153575 CDS Human other chr15:22866928 chr15:22866927 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10528 0 0 1 0 2 TUBGCP5 chr15:22867016 5'GT 22867016 Upstream 90bp 9918 chr14 102805270 102805270 1 + A G LUSC 102805271 + 102805251 102805291 41 GCAGCTAGAGGGAGCTAGCAGCGAGAAGAGGGAACGTGAGG GCAGCTAGAGGGAGCTAGCGGCGAGAAGAGGGAACGTGAGG < 41bp 0.732720325162264 0.523840029677496 NA NA prediction 0.417760590969535 Functional Loss - ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102805271 chr14:102805270 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10529 0 0 1 0 1 ZNF839 chr14:102805290 5'GT 102805290 Upstream 21bp 9919 chr1 86046686 86046686 1 + A G UCEC 86046687 + 86046667 86046707 41 AATGAGCTCCCGCATCGCCAGGGCGCTCGCCTTAGTCGTCA AATGAGCTCCCGCATCGCCGGGGCGCTCGCCTTAGTCGTCA < 41bp 0.750222233254922 0.541356731315142 NA NA prediction 0.41773100387956 Functional Loss - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86046687 chr1:86046686 nonsynonymous SNV 0.071 0 20 hm7G_associated_SNPs_10530 0 0 0 0 1 CYR61 chr1:86046730 5'GT 86046730 Upstream 45bp 9920 chr1 150531572 150531572 1 + T C LIHC 150531573 + 150531553 150531593 41 CAACAGGAAGCCGGCCCCCTGACATGCGCGCCTGCAGCCTG CAACAGGAAGCCGGCCCCCCGACATGCGCGCCTGCAGCCTG < 41bp 0.708861820715183 0.494772459338417 NA NA prediction 0.417723641430367 Functional Loss - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150531573 chr1:150531572 synonymous SNV 0.387 0 20 hm7G_associated_SNPs_10531 0 0 0 0 1 ADAMTSL4 chr1:150531641 5'GT 150531641 Upstream 70bp 9921 chr1 11772021 11772021 1 + A G LIHC 11772022 + 11772002 11772042 41 GGCCCTCTGCAAAGAAGAAAGGTATGCCCACCTACCCCACT GGCCCTCTGCAAAGAAGAAGGGTATGCCCACCTACCCCACT < 41bp 0.743767642677127 0.534911682340066 NA NA prediction 0.417711920674122 Functional Loss - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11772022 chr1:11772021 synonymous SNV . 0 20 hm7G_associated_SNPs_10533 0 0 0 0 1 DRAXIN chr1:11772022 5'GT 11772022 Upstream 2bp 9922 chr8 22275288 22275288 1 + T C UCEC 22275289 + 22275269 22275309 41 TGGCCGGCAGCCACTTCTCTGCCAACTGGATTTTTGCGCTA TGGCCGGCAGCCACTTCTCCGCCAACTGGATTTTTGCGCTA < 41bp 0.70885531678429 0.498990201515144 NA NA prediction 0.41771063356858 Functional Loss - SLC39A14 ENSG00000104635 CDS Human protein_coding chr8:22275289 chr8:22275288 synonymous SNV . 0 20 hm7G_associated_SNPs_10535 0 0 1 0 1 SLC39A14 chr8:22275348 5'GT 22275348 Upstream 61bp 9923 chr18 48450553 48450553 1 + T C LUAD 48450554 + 48450534 48450574 41 GATACTTTTGAAGATGCAGTGAATATACTGAAGCCTTCAAC GATACTTTTGAAGATGCAGCGAATATACTGAAGCCTTCAAC < 41bp 0.714333920272429 0.505490165262707 NA NA prediction 0.417687510019444 Functional Loss - ME2 ENSG00000082212 CDS Human protein_coding chr18:48450554 chr18:48450553 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_10537 0 0 1 0 2 ME2 chr18:48450468 3'AG 48450468 Downstream 86bp 9924 chr18 48450553 48450553 1 + T C LUAD 48450554 + 48450534 48450574 41 GATACTTTTGAAGATGCAGTGAATATACTGAAGCCTTCAAC GATACTTTTGAAGATGCAGCGAATATACTGAAGCCTTCAAC < 41bp 0.714333920272429 0.505490165262707 NA NA prediction 0.417687510019444 Functional Loss - ME2 ENSG00000082212 CDS Human protein_coding chr18:48450554 chr18:48450553 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_10537 0 0 1 0 2 ME2 chr18:48450582 5'GT 48450582 Upstream 30bp 9925 chr9 95768399 95768399 1 + A G STAD 95768400 + 95768380 95768420 41 AGAACTTTGACCGAGCCGTAGGGCTGGTGAGCACGTGGACC AGAACTTTGACCGAGCCGTGGGGCTGGTGAGCACGTGGACC < 41bp 0.744546300262003 0.535710067769998 NA NA prediction 0.41767246498401 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95768400 chr9:95768399 synonymous SNV . 0 20 hm7G_associated_SNPs_10538 0 0 0 0 2 FGD3 chr9:95768306 3'AG 95768306 Downstream 94bp 9926 chr9 95768399 95768399 1 + A G STAD 95768400 + 95768380 95768420 41 AGAACTTTGACCGAGCCGTAGGGCTGGTGAGCACGTGGACC AGAACTTTGACCGAGCCGTGGGGCTGGTGAGCACGTGGACC < 41bp 0.744546300262003 0.535710067769998 NA NA prediction 0.41767246498401 Functional Loss - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95768400 chr9:95768399 synonymous SNV . 0 20 hm7G_associated_SNPs_10538 0 0 0 0 2 FGD3 chr9:95768462 5'GT 95768462 Upstream 64bp 9927 chr3 134920407 134920407 1 + T C UCEC 134920408 + 134920388 134920428 41 CTGGCTGAGATGAATTATGTGCATCGGGACCTGGCTGCTAG CTGGCTGAGATGAATTATGCGCATCGGGACCTGGCTGCTAG < 41bp 0.733477837883762 0.524665714768228 NA NA prediction 0.417624246231068 Functional Loss - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134920408 chr3:134920407 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_10541 0 0 0 0 1 EPHB1 chr3:134920316 3'AG 134920316 Downstream 92bp 9928 chr16 57714199 57714199 1 + T C LIHC 57714200 + 57714180 57714220 41 CCACTGGAGACTGGTCTTCTGAGGGCTGCTCCACGGAGGTC CCACTGGAGACTGGTCTTCCGAGGGCTGCTCCACGGAGGTC < 41bp 0.708809054369248 0.496245307361665 NA NA prediction 0.417618108738497 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714200 chr16:57714199 synonymous SNV . 0 20 hm7G_associated_SNPs_10542 0 0 1 0 2 ADGRG3 chr16:57714177 3'AG 57714177 Downstream 23bp 9929 chr16 57714199 57714199 1 + T C LIHC 57714200 + 57714180 57714220 41 CCACTGGAGACTGGTCTTCTGAGGGCTGCTCCACGGAGGTC CCACTGGAGACTGGTCTTCCGAGGGCTGCTCCACGGAGGTC < 41bp 0.708809054369248 0.496245307361665 NA NA prediction 0.417618108738497 Functional Loss - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714200 chr16:57714199 synonymous SNV . 0 20 hm7G_associated_SNPs_10542 0 0 1 0 2 ADGRG3 chr16:57714277 5'GT 57714277 Upstream 79bp 9930 chrX 115585541 115585541 1 + T C BRCA 115585542 + 115585522 115585562 41 CCCAAAGTGATGAAGAAAATGAGGGTTCCCATAACTTTGGG CCCAAAGTGATGAAGAAAACGAGGGTTCCCATAACTTTGGG < 41bp 0.709726754709324 0.500948904572357 NA NA prediction 0.417555700273934 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115585542 chrX:115585541 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10544 0 0 0 0 2 SLC6A14 chrX:115585490 3'AG 115585490 Downstream 52bp 9931 chrX 115585541 115585541 1 + T C BRCA 115585542 + 115585522 115585562 41 CCCAAAGTGATGAAGAAAATGAGGGTTCCCATAACTTTGGG CCCAAAGTGATGAAGAAAACGAGGGTTCCCATAACTTTGGG < 41bp 0.709726754709324 0.500948904572357 NA NA prediction 0.417555700273934 Functional Loss - SLC6A14 ENSG00000087916 CDS Human other chrX:115585542 chrX:115585541 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10544 0 0 0 0 2 SLC6A14 chrX:115585608 5'GT 115585608 Upstream 68bp 9932 chr1 179631367 179631367 1 + T C SKCM 179631368 + 179631348 179631388 41 CTGCCTCCCATCTATTTACTGCAAGCCTTGGTGGAAAGAAT CTGCCTCCCATCTATTTACCGCAAGCCTTGGTGGAAAGAAT < 41bp 0.736549524230884 0.527773039756037 NA NA prediction 0.417552968949694 Functional Loss - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179631368 chr1:179631367 synonymous SNV . 0 20 hm7G_associated_SNPs_10545 0 0 0 0 1 TDRD5 chr1:179631421 5'GT 179631421 Upstream 55bp 9933 chr18 48466662 48466662 1 + T C LUSC 48466663 + 48466643 48466683 41 TGTTTTTCTCTTCAGGCCCTGACAAGCCAATTGACAGATGA TGTTTTTCTCTTCAGGCCCCGACAAGCCAATTGACAGATGA < 41bp 0.709924483043238 0.501180688515828 NA NA prediction 0.417487589054821 Functional Loss - ME2 ENSG00000082212 CDS Human protein_coding chr18:48466663 chr18:48466662 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_10547 0 0 1 0 2 ME2 chr18:48466658 3'AG 48466658 Downstream 5bp 9934 chr18 48466662 48466662 1 + T C LUSC 48466663 + 48466643 48466683 41 TGTTTTTCTCTTCAGGCCCTGACAAGCCAATTGACAGATGA TGTTTTTCTCTTCAGGCCCCGACAAGCCAATTGACAGATGA < 41bp 0.709924483043238 0.501180688515828 NA NA prediction 0.417487589054821 Functional Loss - ME2 ENSG00000082212 CDS Human protein_coding chr18:48466663 chr18:48466662 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_10547 0 0 1 0 2 ME2 chr18:48466756 5'GT 48466756 Upstream 95bp 9935 chr19 16962292 16962292 1 + A G rs61754499 16962293 + 16962273 16962313 41 CGACAAGACCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCT CGACAAGACCCCGGAGCACGGCAGGAAGCGCTCCCGGCCCT < 41bp 0.770637185632513 0.561906869327059 NA NA prediction 0.417460632610908 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962293 chr19:16962292 nonsynonymous SNV 0.601 0 20 hm7G_associated_SNPs_10548 0 0 0 0 2 SIN3B chr19:16962223 3'AG 16962223 Downstream 70bp 9936 chr19 16962292 16962292 1 + A G rs61754499 16962293 + 16962273 16962313 41 CGACAAGACCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCT CGACAAGACCCCGGAGCACGGCAGGAAGCGCTCCCGGCCCT < 41bp 0.770637185632513 0.561906869327059 NA NA prediction 0.417460632610908 Functional Loss - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962293 chr19:16962292 nonsynonymous SNV 0.601 0 20 hm7G_associated_SNPs_10548 0 0 0 0 2 SIN3B chr19:16962345 5'GT 16962345 Upstream 54bp 9937 chr1 198231718 198231718 1 + T G KIRP 198231719 + 198231699 198231739 41 TTTTAGATATTTGATTTAATGGATGCCAAAGCACGTGCTGA TTTTAGATATTTGATTTAAGGGATGCCAAAGCACGTGCTGA < 41bp 0.885481285317948 0.676774263804354 NA NA prediction 0.417414043027186 Functional Loss - NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231719 chr1:198231718 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10550 0 0 0 0 2 NEK7 chr1:198231705 3'AG 198231705 Downstream 14bp 9938 chr1 198231718 198231718 1 + T G KIRP 198231719 + 198231699 198231739 41 TTTTAGATATTTGATTTAATGGATGCCAAAGCACGTGCTGA TTTTAGATATTTGATTTAAGGGATGCCAAAGCACGTGCTGA < 41bp 0.885481285317948 0.676774263804354 NA NA prediction 0.417414043027186 Functional Loss - NEK7 ENSG00000151414 CDS Human protein_coding chr1:198231719 chr1:198231718 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10550 0 0 0 0 2 NEK7 chr1:198231767 5'GT 198231767 Upstream 50bp 9939 chr12 107937784 107937784 1 + T C LUSC 107937785 + 107937765 107937805 41 CACGGCAATGGCACCCCCCTGCACCACAAGCAGGGGGCACT CACGGCAATGGCACCCCCCCGCACCACAAGCAGGGGGCACT < 41bp 0.726009923907968 0.517305963113461 NA NA prediction 0.417407921589013 Functional Loss - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:107937785 chr12:107937784 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_10551 0 0 0 0 1 BTBD11 chr12:107937712 3'AG 107937712 Downstream 73bp 9940 chr2 29004683 29004683 1 + T C COAD 29004684 + 29004664 29004704 41 CTATAGCAGCCATTGTGGATGAGAAGATCTTCTGTTGTCAT CTATAGCAGCCATTGTGGACGAGAAGATCTTCTGTTGTCAT < 41bp 0.708703527133347 0.499672298019869 NA NA prediction 0.417407054266695 Functional Loss - PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29004684 chr2:29004683 synonymous SNV . 0 20 hm7G_associated_SNPs_10552 0 0 1 0 2 PPP1CB chr2:29004604 3'AG 29004604 Downstream 80bp 9941 chr2 29004683 29004683 1 + T C COAD 29004684 + 29004664 29004704 41 CTATAGCAGCCATTGTGGATGAGAAGATCTTCTGTTGTCAT CTATAGCAGCCATTGTGGACGAGAAGATCTTCTGTTGTCAT < 41bp 0.708703527133347 0.499672298019869 NA NA prediction 0.417407054266695 Functional Loss - PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29004684 chr2:29004683 synonymous SNV . 0 20 hm7G_associated_SNPs_10552 0 0 1 0 2 PPP1CB chr2:29004708 5'GT 29004708 Upstream 26bp 9942 chr1 183201823 183201823 1 + T C LGG 183201824 + 183201804 183201844 41 GGTCTCCAGTTGGCCAAGGTGAGGAGCCAAGAGAACAGCTA GGTCTCCAGTTGGCCAAGGCGAGGAGCCAAGAGAACAGCTA < 41bp 0.708688081116101 0.490215891428211 NA NA prediction 0.417376162232202 Functional Loss - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183201824 chr1:183201823 nonsynonymous SNV 0.167 0 20 hm7G_associated_SNPs_10554 0 0 0 0 1 LAMC2 chr1:183201787 3'AG 183201787 Downstream 37bp 9943 chr14 76186105 76186105 1 + T C COAD 76186106 + 76186086 76186126 41 ATCCAGAAGTGGAGGATTATGGAAACAAATGGAGCATGAGT ATCCAGAAGTGGAGGATTACGGAAACAAATGGAGCATGAGT < 41bp 0.713860477536624 0.505176379770417 NA NA prediction 0.417368195532414 Functional Loss - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76186106 chr14:76186105 synonymous SNV . 0 20 hm7G_associated_SNPs_10555 0 0 1 0 2 TTLL5 chr14:76186078 3'AG 76186078 Downstream 28bp 9944 chr14 76186105 76186105 1 + T C COAD 76186106 + 76186086 76186126 41 ATCCAGAAGTGGAGGATTATGGAAACAAATGGAGCATGAGT ATCCAGAAGTGGAGGATTACGGAAACAAATGGAGCATGAGT < 41bp 0.713860477536624 0.505176379770417 NA NA prediction 0.417368195532414 Functional Loss - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76186106 chr14:76186105 synonymous SNV . 0 20 hm7G_associated_SNPs_10555 0 0 1 0 2 TTLL5 chr14:76186169 5'GT 76186169 Upstream 65bp 9945 chr15 91433079 91433079 1 + A G COAD 91433080 + 91433060 91433100 41 TTGGGTGCAGGCTGACCTCAGTGACAGATGAGCTGGCTGTG TTGGGTGCAGGCTGACCTCGGTGACAGATGAGCTGGCTGTG < 41bp 0.757665612305812 0.548996924982485 NA NA prediction 0.417337374646653 Functional Loss - FES ENSG00000182511 CDS Human protein_coding chr15:91433080 chr15:91433079 synonymous SNV . 0 20 hm7G_associated_SNPs_10557 0 0 1 0 1 FES chr15:91433070 3'AG 91433070 Downstream 10bp 9946 chr16 89655091 89655091 1 + T C UCEC 89655092 + 89655072 89655112 41 GCCCACTGCAGGTGGCCATTGACTTCACCGCCTCCAATGGA GCCCACTGCAGGTGGCCATCGACTTCACCGCCTCCAATGGA < 41bp 0.714162235548326 0.505505089566353 NA NA prediction 0.417314291963947 Functional Loss - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89655092 chr16:89655091 synonymous SNV . 0 20 hm7G_associated_SNPs_10558 0 0 1 0 1 CPNE7 chr16:89655083 3'AG 89655083 Downstream 9bp 9947 chr1 150525443 150525443 1 + T C COAD 150525444 + 150525424 150525464 41 CGAAGGTGTCTGGGGACCTTGGGTCCAGTGGGCCTCTTGCT CGAAGGTGTCTGGGGACCTCGGGTCCAGTGGGCCTCTTGCT < 41bp 0.717550525376937 0.508893420906056 NA NA prediction 0.417314208941763 Functional Loss - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150525444 chr1:150525443 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_10559 0 0 1 0 1 ADAMTSL4 chr1:150525374 3'AG 150525374 Downstream 70bp 9948 chr1 2520421 2520421 1 + A G UCEC 2520422 + 2520402 2520442 41 GGCGACTACGTCCCCAAGGAGCACATCCTGCAGGTCCTGGG GGCGACTACGTCCCCAAGGGGCACATCCTGCAGGTCCTGGG < 41bp 0.737580767931752 0.528941662504981 NA NA prediction 0.417278210853542 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2520422 chr1:2520421 nonsynonymous SNV 0.081 3 20 hm7G_associated_SNPs_10560 0 0 1 0 4 FAM213B chr1:2520361 3'AG 2520361 Downstream 61bp 9949 chr1 2520421 2520421 1 + A G UCEC 2520422 + 2520402 2520442 41 GGCGACTACGTCCCCAAGGAGCACATCCTGCAGGTCCTGGG GGCGACTACGTCCCCAAGGGGCACATCCTGCAGGTCCTGGG < 41bp 0.737580767931752 0.528941662504981 NA NA prediction 0.417278210853542 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2520422 chr1:2520421 nonsynonymous SNV 0.081 3 20 hm7G_associated_SNPs_10560 0 0 1 0 4 FAM213B chr1:2520393 3'AG 2520393 Downstream 29bp 9950 chr1 2520421 2520421 1 + A G UCEC 2520422 + 2520402 2520442 41 GGCGACTACGTCCCCAAGGAGCACATCCTGCAGGTCCTGGG GGCGACTACGTCCCCAAGGGGCACATCCTGCAGGTCCTGGG < 41bp 0.737580767931752 0.528941662504981 NA NA prediction 0.417278210853542 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2520422 chr1:2520421 nonsynonymous SNV 0.081 3 20 hm7G_associated_SNPs_10560 0 0 1 0 4 FAM213B chr1:2520396 3'AG 2520396 Downstream 26bp 9951 chr1 2520421 2520421 1 + A G UCEC 2520422 + 2520402 2520442 41 GGCGACTACGTCCCCAAGGAGCACATCCTGCAGGTCCTGGG GGCGACTACGTCCCCAAGGGGCACATCCTGCAGGTCCTGGG < 41bp 0.737580767931752 0.528941662504981 NA NA prediction 0.417278210853542 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2520422 chr1:2520421 nonsynonymous SNV 0.081 3 20 hm7G_associated_SNPs_10560 0 0 1 0 4 FAM213B chr1:2520479 5'GT 2520479 Upstream 59bp 9952 chr17 18814532 18814532 1 + T C UCEC 18814533 + 18814513 18814553 41 CCACCCATGGTCAGAAGTGTGGCTGCCATCCACCCCAGCCT CCACCCATGGTCAGAAGTGCGGCTGCCATCCACCCCAGCCT < 41bp 0.717021782689855 0.508429096029437 NA NA prediction 0.417185373320835 Functional Loss - PRPSAP2 ENSG00000141127 CDS Human protein_coding chr17:18814533 chr17:18814532 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_10565 0 0 1 0 1 PRPSAP2 chr17:18814564 5'GT 18814564 Upstream 33bp 9953 chr7 73638055 73638055 1 + T C UCEC 73638056 + 73638036 73638076 41 CTCCTCTCTCTCCTGCAGATGATGATGCCAATTCCTACGAG CTCCTCTCTCTCCTGCAGACGATGATGCCAATTCCTACGAG < 41bp 0.732683671947289 0.524099335758086 NA NA prediction 0.417168672378406 Functional Loss - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73638056 chr7:73638055 stoploss . 0 20 hm7G_associated_SNPs_10566 0 0 0 0 2 LAT2 chr7:73638054 3'AG 73638054 Downstream 2bp 9954 chr7 73638055 73638055 1 + T C UCEC 73638056 + 73638036 73638076 41 CTCCTCTCTCTCCTGCAGATGATGATGCCAATTCCTACGAG CTCCTCTCTCTCCTGCAGACGATGATGCCAATTCCTACGAG < 41bp 0.732683671947289 0.524099335758086 NA NA prediction 0.417168672378406 Functional Loss - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73638056 chr7:73638055 stoploss . 0 20 hm7G_associated_SNPs_10566 0 0 0 0 2 LAT2 chr7:73638113 5'GT 73638113 Upstream 59bp 9955 chr7 6821050 6821050 1 + T C rs140658665 6821051 + 6821031 6821071 41 TCGCTTACTGCAGACCCAGTGCAGCGCCTCCCCACGAGCCT TCGCTTACTGCAGACCCAGCGCAGCGCCTCCCCACGAGCCT < 41bp 0.738744201950327 0.530165691346961 NA NA prediction 0.417157021206732 Functional Loss - RSPH10B;RSPH10B2 ENSG00000169402 CDS Human protein_coding chr7:6821051 chr7:6821050 synonymous SNV . 0 20 hm7G_associated_SNPs_10567 0 0 0 0 2 RSPH10B;RSPH10B2 chr7:6820959 3'AG 6820959 Downstream 92bp 9956 chr7 6821050 6821050 1 + T C rs140658665 6821051 + 6821031 6821071 41 TCGCTTACTGCAGACCCAGTGCAGCGCCTCCCCACGAGCCT TCGCTTACTGCAGACCCAGCGCAGCGCCTCCCCACGAGCCT < 41bp 0.738744201950327 0.530165691346961 NA NA prediction 0.417157021206732 Functional Loss - RSPH10B;RSPH10B2 ENSG00000169402 CDS Human protein_coding chr7:6821051 chr7:6821050 synonymous SNV . 0 20 hm7G_associated_SNPs_10567 0 0 0 0 2 RSPH10B;RSPH10B2 chr7:6821107 5'GT 6821107 Upstream 58bp 9957 chr2 44101082 44101082 1 + T C UCEC 44101083 + 44101063 44101103 41 CCCTCTTGTTCATGATCGGTGCTCTCATCCCTTTCAACGTC CCCTCTTGTTCATGATCGGCGCTCTCATCCCTTTCAACGTC < 41bp 0.7143570763888 0.505816160637743 NA NA prediction 0.417081831502115 Functional Loss - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44101083 chr2:44101082 synonymous SNV . 0 20 hm7G_associated_SNPs_10569 0 0 0 0 1 ABCG8 chr2:44101125 5'GT 44101125 Upstream 44bp 9958 chr22 50616806 50616806 1 + A G rs5771206 50616807 + 50616787 50616827 41 AGGCGGAGGACTGTGGGCTAGGCCTGGCCCCGGCGCCCATC AGGCGGAGGACTGTGGGCTGGGCCTGGCCCCGGCGCCCATC < 41bp 0.784957482941504 0.576427136858044 NA NA prediction 0.41706069216692 Functional Loss - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50616807 chr22:50616806 synonymous SNV . 0 20 hm7G_associated_SNPs_10571 0 0 1 0 1 PANX2 chr22:50616831 5'GT 50616831 Upstream 26bp 9959 chr11 124908497 124908497 1 + T G UCEC 124908498 + 124908478 124908518 41 CAGAGAGAAAAAGAATACCTGAGGTAATTTGAAAAGGTCTT CAGAGAGAAAAAGAATACCGGAGGTAATTTGAAAAGGTCTT < 41bp 0.708523700081872 0.396357215625046 NA NA prediction 0.417047400163743 Functional Loss - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124908498 chr11:124908497 nonsynonymous SNV 0.977 1 20 hm7G_associated_SNPs_10572 0 0 1 0 1 CCDC15 chr11:124908500 5'GT 124908500 Upstream 4bp 9960 chr2 207429748 207429748 1 + T C UCEC 207429749 + 207429729 207429769 41 GTTTTATTGGACCAGAATGTGACTGCACAGAATCCTGGGGT GTTTTATTGGACCAGAATGCGACTGCACAGAATCCTGGGGT < 41bp 0.708507908383411 0.494533345490042 NA NA prediction 0.417015816766822 Functional Loss - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207429749 chr2:207429748 synonymous SNV . 0 20 hm7G_associated_SNPs_10574 0 0 0 2 1 ADAM23 chr2:207429744 3'AG 207429744 Downstream 5bp 9961 chr5 172573877 172573877 1 + T C UCEC 172573878 + 172573858 172573898 41 ATGTCTCCTAGGATATCCGTGATTGTTCAGGACCCTTAAGT ATGTCTCCTAGGATATCCGCGATTGTTCAGGACCCTTAAGT < 41bp 0.730741531590907 0.522238703656768 NA NA prediction 0.417005655868278 Functional Loss - BNIP1 ENSG00000113734 CDS Human protein_coding chr5:172573878 chr5:172573877 synonymous SNV . 0 20 hm7G_associated_SNPs_10575 0 0 1 0 2 BNIP1 chr5:172573869 3'AG 172573869 Downstream 9bp 9962 chr5 172573877 172573877 1 + T C UCEC 172573878 + 172573858 172573898 41 ATGTCTCCTAGGATATCCGTGATTGTTCAGGACCCTTAAGT ATGTCTCCTAGGATATCCGCGATTGTTCAGGACCCTTAAGT < 41bp 0.730741531590907 0.522238703656768 NA NA prediction 0.417005655868278 Functional Loss - BNIP1 ENSG00000113734 CDS Human protein_coding chr5:172573878 chr5:172573877 synonymous SNV . 0 20 hm7G_associated_SNPs_10575 0 0 1 0 2 BNIP1 chr5:172573961 5'GT 172573961 Upstream 85bp 9963 chr10 134014003 134014003 1 + T C rs147293903 134014004 + 134013984 134014024 41 CACGGCGGACCACCTCACCTGCTTGCTGTCCAGGTAAGCAG CACGGCGGACCACCTCACCCGCTTGCTGTCCAGGTAAGCAG < 41bp 0.713526391422981 0.505026496537389 NA NA prediction 0.416999789771186 Functional Loss - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014004 chr10:134014003 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_10576 0 0 0 0 1 DPYSL4 chr10:134014016 5'GT 134014016 Upstream 14bp 9964 chr1 155148412 155148412 1 + T G SKCM 155148413 + 155148393 155148433 41 GGTGCTTTGCACCCCCAAGTGATCATGTTCCCGTGCCCAGC GGTGCTTTGCACCCCCAAGGGATCATGTTCCCGTGCCCAGC < 41bp 0.708497997547724 0.371857751679874 NA NA prediction 0.416995995095449 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155148413 chr1:155148412 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_10577 0 0 0 0 1 TRIM46 chr1:155148364 3'AG 155148364 Downstream 49bp 9965 chr5 147782032 147782032 1 + T C UCEC 147782033 + 147782013 147782053 41 ATTCCTCCTGAAAATAAACTGAAAATTCCTATAGGAGCCAA ATTCCTCCTGAAAATAAACCGAAAATTCCTATAGGAGCCAA < 41bp 0.708851642288041 0.500361065147243 NA NA prediction 0.416981154281596 Functional Loss - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147782033 chr5:147782032 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10579 0 0 1 0 1 FBXO38 chr5:147782076 5'GT 147782076 Upstream 45bp 9966 chr17 9792728 9792728 1 + A G rs549558422 9792729 + 9792709 9792749 41 ACTGGGTCCGCTTCTTGCTAGCCCGCCACTCAGGCTGCAGA ACTGGGTCCGCTTCTTGCTGGCCCGCCACTCAGGCTGCAGA < 41bp 0.708483493728198 0.485246487503635 NA NA prediction 0.416966987456396 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9792729 chr17:9792728 synonymous SNV . 0 20 hm7G_associated_SNPs_10581 0 0 0 0 1 GLP2R chr17:9792687 3'AG 9792687 Downstream 42bp 9967 chr19 2993511 2993511 1 + A G LUSC 2993512 + 2993492 2993532 41 GCAGTGGCTGCAAAGCACCAGCGGGAGCCAGCGGCACATGG GCAGTGGCTGCAAAGCACCGGCGGGAGCCAGCGGCACATGG < 41bp 0.742973599109816 0.53451490297841 NA NA prediction 0.416917392262812 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2993512 chr19:2993511 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10582 0 0 0 0 2 TLE6 chr19:2993430 3'AG 2993430 Downstream 82bp 9968 chr19 2993511 2993511 1 + A G LUSC 2993512 + 2993492 2993532 41 GCAGTGGCTGCAAAGCACCAGCGGGAGCCAGCGGCACATGG GCAGTGGCTGCAAAGCACCGGCGGGAGCCAGCGGCACATGG < 41bp 0.742973599109816 0.53451490297841 NA NA prediction 0.416917392262812 Functional Loss - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2993512 chr19:2993511 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10582 0 0 0 0 2 TLE6 chr19:2993580 5'GT 2993580 Upstream 70bp 9969 chr5 138163226 138163226 1 + T C DLBC 138163227 + 138163207 138163247 41 CAAATCATTGTGGACCCCTTGAGCTTCAGCGAGGAGCGCTT CAAATCATTGTGGACCCCTCGAGCTTCAGCGAGGAGCGCTT < 41bp 0.719252251933912 0.510801211628808 NA NA prediction 0.416902080610209 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138163227 chr5:138163226 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_10583 0 0 1 0 1 CTNNA1 chr5:138163204 3'AG 138163204 Downstream 23bp 9970 chr2 9515031 9515031 1 + T C LIHC 9515032 + 9515012 9515052 41 TGCTCCAAGCTTATGCTGATGGTGTGGATCTTACGGAAAAA TGCTCCAAGCTTATGCTGACGGTGTGGATCTTACGGAAAAA < 41bp 0.731271873741001 0.52286199801768 NA NA prediction 0.416819751446642 Functional Loss - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9515032 chr2:9515031 synonymous SNV . 0 20 hm7G_associated_SNPs_10585 0 0 1 0 1 ASAP2 chr2:9515073 5'GT 9515073 Upstream 43bp 9971 chr14 102516411 102516411 1 + T G KIRC 102516412 + 102516392 102516432 41 GGCTTCCGCCTCACAGGTTTGAAACTTCAAGGGGCCACGTG GGCTTCCGCCTCACAGGTTGGAAACTTCAAGGGGCCACGTG < 41bp 0.708381239292875 0.397596989230455 NA NA prediction 0.41676247858575 Functional Loss - DYNC1H1 ENSG00000197102 CDS Human protein_coding chr14:102516412 chr14:102516411 nonsynonymous SNV 0.627 4 20 hm7G_associated_SNPs_10586 0 0 1 0 1 DYNC1H1 chr14:102516408 3'AG 102516408 Downstream 4bp 9972 chr3 112969477 112969477 1 + T G OV 112969478 + 112969458 112969498 41 ACTGTGATCTTGGGCTGCGTGGTGGAACCTCCAAGGATGAA ACTGTGATCTTGGGCTGCGGGGTGGAACCTCCAAGGATGAA < 41bp 0.708376305473184 0.379390850644622 NA NA prediction 0.416752610946369 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:112969478 chr3:112969477 nonsynonymous SNV 0.681 0 20 hm7G_associated_SNPs_10587 0 0 1 0 1 BOC chr3:112969402 3'AG 112969402 Downstream 76bp 9973 chr20 17417425 17417425 1 + T C GBM 17417426 + 17417406 17417446 41 ATCAGTCATATGCCACAGCTGATTGACATCTACAGCGCCAG ATCAGTCATATGCCACAGCCGATTGACATCTACAGCGCCAG < 41bp 0.729699998533507 0.52133102104684 NA NA prediction 0.416737954973334 Functional Loss - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17417426 chr20:17417425 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_10588 0 0 0 0 1 PCSK2 chr20:17417353 3'AG 17417353 Downstream 73bp 9974 chr13 24233288 24233288 1 + T C UCEC 24233289 + 24233269 24233309 41 AGCGCTCTGGCCACCGTCCTGCTGGCCCTGCTCATCCTCTG AGCGCTCTGGCCACCGTCCCGCTGGCCCTGCTCATCCTCTG < 41bp 0.749583463237866 0.541225684105849 NA NA prediction 0.416715558264033 Functional Loss - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24233289 chr13:24233288 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_10589 0 0 1 0 2 TNFRSF19 chr13:24233189 3'AG 24233189 Downstream 100bp 9975 chr13 24233288 24233288 1 + T C UCEC 24233289 + 24233269 24233309 41 AGCGCTCTGGCCACCGTCCTGCTGGCCCTGCTCATCCTCTG AGCGCTCTGGCCACCGTCCCGCTGGCCCTGCTCATCCTCTG < 41bp 0.749583463237866 0.541225684105849 NA NA prediction 0.416715558264033 Functional Loss - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24233289 chr13:24233288 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_10589 0 0 1 0 2 TNFRSF19 chr13:24233353 5'GT 24233353 Upstream 66bp 9976 chr20 30737507 30737507 1 + T C UCEC 30737508 + 30737488 30737528 41 AGGCCCCCCCAGTACCCCATGATCCTCAGCTCCCTGCTGGG AGGCCCCCCCAGTACCCCACGATCCTCAGCTCCCTGCTGGG < 41bp 0.733753382137528 0.52539573420659 NA NA prediction 0.416715295861875 Functional Loss - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30737508 chr20:30737507 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10590 0 0 1 0 2 TM9SF4 chr20:30737437 3'AG 30737437 Downstream 71bp 9977 chr20 30737507 30737507 1 + T C UCEC 30737508 + 30737488 30737528 41 AGGCCCCCCCAGTACCCCATGATCCTCAGCTCCCTGCTGGG AGGCCCCCCCAGTACCCCACGATCCTCAGCTCCCTGCTGGG < 41bp 0.733753382137528 0.52539573420659 NA NA prediction 0.416715295861875 Functional Loss - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30737508 chr20:30737507 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10590 0 0 1 0 2 TM9SF4 chr20:30737569 5'GT 30737569 Upstream 63bp 9978 chr17 21904114 21904114 1 + A G KIRP 21904115 + 21904095 21904135 41 AGGAACGTCTCCGGCTGCCAGGAGTCGCAAGGGGCCGAGCA AGGAACGTCTCCGGCTGCCGGGAGTCGCAAGGGGCCGAGCA < 41bp 0.716986272196154 0.508641235556036 NA NA prediction 0.416690073280236 Functional Loss - FLJ36000 ENSG00000266172 downstream Human other chr17:21904115 chr17:21904114 . . 0 20 hm7G_associated_SNPs_10592 0 0 0 0 1 FLJ36000 chr17:21904212 5'GT 21904212 Upstream 99bp 9979 chr10 73050685 73050685 1 + A G STAD 73050686 + 73050666 73050706 41 CCGCAGTGCTGGAGGCCTCAGGGGATGCGGCGCTGTATGCG CCGCAGTGCTGGAGGCCTCGGGGGATGCGGCGCTGTATGCG < 41bp 0.752681351051133 0.544338720246619 NA NA prediction 0.416685261609028 Functional Loss - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73050686 chr10:73050685 synonymous SNV . 0 20 hm7G_associated_SNPs_10593 0 0 0 0 1 UNC5B chr10:73050672 3'AG 73050672 Downstream 14bp 9980 chr22 39411611 39411611 1 + A G SKCM 39411612 + 39411592 39411632 41 GCCTTCAGAAACCCGATGAAGGCAATGTATCCAGGCACATT GCCTTCAGAAACCCGATGAGGGCAATGTATCCAGGCACATT < 41bp 0.733444885120459 0.525110387278897 NA NA prediction 0.416668995683125 Functional Loss - APOBEC3C ENSG00000244509 CDS Human protein_coding chr22:39411612 chr22:39411611 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_10595 0 0 1 0 1 APOBEC3C chr22:39411600 3'AG 39411600 Downstream 12bp 9981 chr19 9958760 9958760 1 + A G UCEC 9958761 + 9958741 9958781 41 TTTGAGTCTCTGGCCTCACAGTTCAGCGACTGCAGCTCAGC TTTGAGTCTCTGGCCTCACGGTTCAGCGACTGCAGCTCAGC < 41bp 0.744929652527116 0.536597396695479 NA NA prediction 0.416664511663275 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9958761 chr19:9958760 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_10596 0 0 1 0 2 PIN1 chr19:9958706 3'AG 9958706 Downstream 55bp 9982 chr19 9958760 9958760 1 + A G UCEC 9958761 + 9958741 9958781 41 TTTGAGTCTCTGGCCTCACAGTTCAGCGACTGCAGCTCAGC TTTGAGTCTCTGGCCTCACGGTTCAGCGACTGCAGCTCAGC < 41bp 0.744929652527116 0.536597396695479 NA NA prediction 0.416664511663275 Functional Loss - PIN1 ENSG00000127445 CDS Human protein_coding chr19:9958761 chr19:9958760 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_10596 0 0 1 0 2 PIN1 chr19:9958816 5'GT 9958816 Upstream 57bp 9983 chr16 69988415 69988415 1 + A G COAD 69988416 + 69988396 69988436 41 CTATGGTTTGCAGAGGGGCAGCGGTACAGCCACGCGGCAGG CTATGGTTTGCAGAGGGGCGGCGGTACAGCCACGCGGCAGG < 41bp 0.708329134169331 0.482377849356141 NA NA prediction 0.416658268338662 Functional Loss - CLEC18A ENSG00000157322 CDS Human protein_coding chr16:69988416 chr16:69988415 nonsynonymous SNV 0.076 0 20 hm7G_associated_SNPs_10597 0 0 0 0 1 CLEC18A chr16:69988476 5'GT 69988476 Upstream 62bp 9984 chr1 35863016 35863016 1 + T C UCEC 35863017 + 35862997 35863037 41 TTCCATCTTCAATGGATAGTGAAGATAAAGTCACAGAGAGT TTCCATCTTCAATGGATAGCGAAGATAAAGTCACAGAGAGT < 41bp 0.719690837290723 0.511383135497571 NA NA prediction 0.416615403586303 Functional Loss - ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35863017 chr1:35863016 synonymous SNV . 0 20 hm7G_associated_SNPs_10599 0 0 1 0 1 ZMYM4 chr1:35862978 3'AG 35862978 Downstream 39bp 9985 chr2 211473198 211473198 1 + T C LUSC 211473199 + 211473179 211473219 41 GAACCTAGCCTGGATTACATGGTCACCAAGATTCCCCGCTG GAACCTAGCCTGGATTACACGGTCACCAAGATTCCCCGCTG < 41bp 0.724444965735225 0.516142724903647 NA NA prediction 0.416604481663156 Functional Loss - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211473199 chr2:211473198 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10601 0 0 1 0 1 CPS1 chr2:211473283 5'GT 211473283 Upstream 86bp 9986 chr6 159173058 159173058 1 + T C UCEC 159173059 + 159173039 159173079 41 CCGACCTTTCAGGAGACCTTGAAGGTACTTGCTGGACAGAT CCGACCTTTCAGGAGACCTCGAAGGTACTTGCTGGACAGAT < 41bp 0.708297144633676 0.496306671165146 NA NA prediction 0.416594289267352 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159173059 chr6:159173058 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10602 0 0 0 0 2 SYTL3 chr6:159172960 3'AG 159172960 Downstream 99bp 9987 chr6 159173058 159173058 1 + T C UCEC 159173059 + 159173039 159173079 41 CCGACCTTTCAGGAGACCTTGAAGGTACTTGCTGGACAGAT CCGACCTTTCAGGAGACCTCGAAGGTACTTGCTGGACAGAT < 41bp 0.708297144633676 0.496306671165146 NA NA prediction 0.416594289267352 Functional Loss - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159173059 chr6:159173058 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10602 0 0 0 0 2 SYTL3 chr6:159173062 5'GT 159173062 Upstream 5bp 9988 chr14 103369596 103369596 1 + T C UCEC 103369597 + 103369577 103369617 41 CCTTTGGTTTGGAAGCGAGTGATAGACAGCCAAGCAGAGAA CCTTTGGTTTGGAAGCGAGCGATAGACAGCCAAGCAGAGAA < 41bp 0.726128070555738 0.517831127931397 NA NA prediction 0.416593885248683 Functional Loss - TRAF3 ENSG00000131323 CDS Human protein_coding chr14:103369597 chr14:103369596 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10603 0 0 0 0 1 TRAF3 chr14:103369592 3'AG 103369592 Downstream 5bp 9989 chr20 31825933 31825933 1 + A G LUSC 31825934 + 31825914 31825954 41 CCGCTCCTGGACATCCTGAAGCCTGGAGGAGGTACTTCTGG CCGCTCCTGGACATCCTGAGGCCTGGAGGAGGTACTTCTGG < 41bp 0.708282608816414 0.485603350733899 NA NA prediction 0.416565217632828 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825934 chr20:31825933 nonsynonymous SNV 0.063 0 20 hm7G_associated_SNPs_10605 0 0 0 0 2 BPIFA1 chr20:31825861 3'AG 31825861 Downstream 73bp 9990 chr20 31825933 31825933 1 + A G LUSC 31825934 + 31825914 31825954 41 CCGCTCCTGGACATCCTGAAGCCTGGAGGAGGTACTTCTGG CCGCTCCTGGACATCCTGAGGCCTGGAGGAGGTACTTCTGG < 41bp 0.708282608816414 0.485603350733899 NA NA prediction 0.416565217632828 Functional Loss - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31825934 chr20:31825933 nonsynonymous SNV 0.063 0 20 hm7G_associated_SNPs_10605 0 0 0 0 2 BPIFA1 chr20:31826020 5'GT 31826020 Upstream 88bp 9991 chr1 45110434 45110434 1 + T C SKCM 45110435 + 45110415 45110455 41 ATGCTGACTTGGATGTGGATGGGGATGACACTCTGGAGTAT ATGCTGACTTGGATGTGGACGGGGATGACACTCTGGAGTAT < 41bp 0.732849330031124 0.52458570084666 NA NA prediction 0.416527258368929 Functional Loss - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45110435 chr1:45110434 synonymous SNV . 0 20 hm7G_associated_SNPs_10608 0 0 1 0 1 RNF220 chr1:45110370 3'AG 45110370 Downstream 65bp 9992 chr7 128492900 128492900 1 + A G KIRC 128492901 + 128492881 128492921 41 GGGATCTCCTTCACCCCCAAGGAGGTCGGGGAGCACGTGGT GGGATCTCCTTCACCCCCAGGGAGGTCGGGGAGCACGTGGT < 41bp 0.733419164475275 0.525164901279885 NA NA prediction 0.41650852639078 Functional Loss - FLNC ENSG00000128591 CDS Human protein_coding chr7:128492901 chr7:128492900 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10610 0 0 1 0 1 FLNC chr7:128492882 3'AG 128492882 Downstream 19bp 9993 chr1 1560771 1560771 1 + A G LUSC 1560772 + 1560752 1560792 41 GATGTCCTGCGGGAGATGCAGGAAGGCCACGGCGGCTGGAA GATGTCCTGCGGGAGATGCGGGAAGGCCACGGCGGCTGGAA < 41bp 0.744876366961269 0.536629820680111 NA NA prediction 0.416493092562317 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1560772 chr1:1560771 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_10611 0 0 1 0 1 MIB2 chr1:1560808 5'GT 1560808 Upstream 38bp 9994 chr14 73718255 73718255 1 + T C LUSC 73718256 + 73718236 73718276 41 TCCTCATCGACGAGGCTGCTGCCAGCAGGAACTTCCTGGGT TCCTCATCGACGAGGCTGCCGCCAGCAGGAACTTCCTGGGT < 41bp 0.724704139202039 0.516462640525619 NA NA prediction 0.416482997352839 Functional Loss - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73718256 chr14:73718255 synonymous SNV . 0 20 hm7G_associated_SNPs_10612 0 0 0 0 2 PAPLN chr14:73718194 3'AG 73718194 Downstream 62bp 9995 chr14 73718255 73718255 1 + T C LUSC 73718256 + 73718236 73718276 41 TCCTCATCGACGAGGCTGCTGCCAGCAGGAACTTCCTGGGT TCCTCATCGACGAGGCTGCCGCCAGCAGGAACTTCCTGGGT < 41bp 0.724704139202039 0.516462640525619 NA NA prediction 0.416482997352839 Functional Loss - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73718256 chr14:73718255 synonymous SNV . 0 20 hm7G_associated_SNPs_10612 0 0 0 0 2 PAPLN chr14:73718274 5'GT 73718274 Upstream 20bp 9996 chr15 73536774 73536774 1 + T C LGG 73536775 + 73536755 73536795 41 GTGTACATCTTTAGAGTTATGGCTCAAAATAAGCATGGCTC GTGTACATCTTTAGAGTTACGGCTCAAAATAAGCATGGCTC < 41bp 0.732027206298027 0.52379058841425 NA NA prediction 0.416473235767555 Functional Loss - NEO1 ENSG00000067141 CDS Human protein_coding chr15:73536775 chr15:73536774 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_10613 0 0 0 0 1 NEO1 chr15:73536685 3'AG 73536685 Downstream 90bp 9997 chr11 61624938 61624938 1 + T C LIHC 61624939 + 61624919 61624959 41 CCTGCAGTTGGGCCGCCGCTGCTCATCCCCATGTATTTCCA CCTGCAGTTGGGCCGCCGCCGCTCATCCCCATGTATTTCCA < 41bp 0.749726207849273 0.541495169497189 NA NA prediction 0.416462076704168 Functional Loss - FADS2 ENSG00000134824 CDS Human protein_coding chr11:61624939 chr11:61624938 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10614 0 0 1 0 2 FADS2 chr11:61624926 3'AG 61624926 Downstream 13bp 9998 chr11 61624938 61624938 1 + T C LIHC 61624939 + 61624919 61624959 41 CCTGCAGTTGGGCCGCCGCTGCTCATCCCCATGTATTTCCA CCTGCAGTTGGGCCGCCGCCGCTCATCCCCATGTATTTCCA < 41bp 0.749726207849273 0.541495169497189 NA NA prediction 0.416462076704168 Functional Loss - FADS2 ENSG00000134824 CDS Human protein_coding chr11:61624939 chr11:61624938 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10614 0 0 1 0 2 FADS2 chr11:61625002 5'GT 61625002 Upstream 65bp 9999 chr1 57333312 57333312 1 + A G rs34047108 57333313 + 57333293 57333333 41 GGGCAGCTACACCCGCAGCAGTTACCTGCCAGCTGAGCAAC GGGCAGCTACACCCGCAGCGGTTACCTGCCAGCTGAGCAAC < 41bp 0.728423016438094 0.520196493713186 NA NA prediction 0.416453045449817 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57333313 chr1:57333312 synonymous SNV . 0 20 hm7G_associated_SNPs_10615 0 0 0 0 2 C8A chr1:57333282 3'AG 57333282 Downstream 31bp 10000 chr1 57333312 57333312 1 + A G rs34047108 57333313 + 57333293 57333333 41 GGGCAGCTACACCCGCAGCAGTTACCTGCCAGCTGAGCAAC GGGCAGCTACACCCGCAGCGGTTACCTGCCAGCTGAGCAAC < 41bp 0.728423016438094 0.520196493713186 NA NA prediction 0.416453045449817 Functional Loss - C8A ENSG00000157131 CDS Human protein_coding chr1:57333313 chr1:57333312 synonymous SNV . 0 20 hm7G_associated_SNPs_10615 0 0 0 0 2 C8A chr1:57333375 5'GT 57333375 Upstream 64bp 10001 chr8 118183397 118183397 1 + T G OV 118183398 + 118183378 118183418 41 AAGTAATTCTCTCAGCTCATGTTGCTACAGGTCAGTGAGTT AAGTAATTCTCTCAGCTCAGGTTGCTACAGGTCAGTGAGTT < 41bp 0.708184385334969 0.393985989600144 NA NA prediction 0.416368770669939 Functional Loss - SLC30A8 ENSG00000164756 CDS Human protein_coding chr8:118183398 chr8:118183397 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_10617 0 0 0 0 1 SLC30A8 chr8:118183407 5'GT 118183407 Upstream 11bp 10002 chr15 72978581 72978581 1 + A G COAD 72978582 + 72978562 72978602 41 AGCTAAAATGGCTGAGGAGAGAGTCGCGACGGTGAGCGCCG AGCTAAAATGGCTGAGGAGGGAGTCGCGACGGTGAGCGCCG < 41bp 0.714960014987458 0.506785690577792 NA NA prediction 0.416348648819332 Functional Loss - BBS4 ENSG00000140463 CDS Human protein_coding chr15:72978582 chr15:72978581 nonsynonymous SNV 0.011 1 20 hm7G_associated_SNPs_10618 0 0 1 0 1 BBS4 chr15:72978592 5'GT 72978592 Upstream 12bp 10003 chr19 3148745 3148745 1 + A G LUSC 3148746 + 3148726 3148766 41 GAGGCCATGGAGCGGCTGCAGATTCCATTCAGCAGGCCCGA GAGGCCATGGAGCGGCTGCGGATTCCATTCAGCAGGCCCGA < 41bp 0.760393764149874 0.552225763645067 NA NA prediction 0.416336001009613 Functional Loss - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3148746 chr19:3148745 nonsynonymous SNV 0.231 0 20 hm7G_associated_SNPs_10619 0 0 0 0 1 GNA15 chr19:3148773 5'GT 3148773 Upstream 29bp 10004 chr9 127618797 127618797 1 + T C UCEC 127618798 + 127618778 127618818 41 ATCTGGGACCTGCGGATGGTGACCCCAGCAGTCTCCCACCA ATCTGGGACCTGCGGATGGCGACCCCAGCAGTCTCCCACCA < 41bp 0.708166542199723 0.497735007799722 NA NA prediction 0.416333084399447 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618798 chr9:127618797 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10620 0 0 0 0 2 WDR38 chr9:127618748 3'AG 127618748 Downstream 50bp 10005 chr9 127618797 127618797 1 + T C UCEC 127618798 + 127618778 127618818 41 ATCTGGGACCTGCGGATGGTGACCCCAGCAGTCTCCCACCA ATCTGGGACCTGCGGATGGCGACCCCAGCAGTCTCCCACCA < 41bp 0.708166542199723 0.497735007799722 NA NA prediction 0.416333084399447 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618798 chr9:127618797 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10620 0 0 0 0 2 WDR38 chr9:127618879 5'GT 127618879 Upstream 83bp 10006 chr18 43319537 43319537 1 + T C LUAD 43319538 + 43319518 43319558 41 GGACATCTACTTTGGACTCTGGGGTTTCAACAGCTCTCTGG GGACATCTACTTTGGACTCCGGGGTTTCAACAGCTCTCTGG < 41bp 0.708151347862108 0.49878866200906 NA NA prediction 0.416302695724216 Functional Loss - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43319538 chr18:43319537 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10623 0 0 0 0 2 SLC14A1 chr18:43319493 3'AG 43319493 Downstream 45bp 10007 chr18 43319537 43319537 1 + T C LUAD 43319538 + 43319518 43319558 41 GGACATCTACTTTGGACTCTGGGGTTTCAACAGCTCTCTGG GGACATCTACTTTGGACTCCGGGGTTTCAACAGCTCTCTGG < 41bp 0.708151347862108 0.49878866200906 NA NA prediction 0.416302695724216 Functional Loss - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43319538 chr18:43319537 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10623 0 0 0 0 2 SLC14A1 chr18:43319627 5'GT 43319627 Upstream 91bp 10008 chr6 43038134 43038134 1 + A G SKCM 43038135 + 43038115 43038155 41 GGCTGTGCTCTATGGCAAAAGGGGCAAGTACAAGGAGGCAG GGCTGTGCTCTATGGCAAAGGGGGCAAGTACAAGGAGGCAG < 41bp 0.708133090992515 0.497638014150585 NA NA prediction 0.416266181985031 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43038135 chr6:43038134 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_10625 0 0 1 0 2 KLC4 chr6:43038092 3'AG 43038092 Downstream 43bp 10009 chr6 43038134 43038134 1 + A G SKCM 43038135 + 43038115 43038155 41 GGCTGTGCTCTATGGCAAAAGGGGCAAGTACAAGGAGGCAG GGCTGTGCTCTATGGCAAAGGGGGCAAGTACAAGGAGGCAG < 41bp 0.708133090992515 0.497638014150585 NA NA prediction 0.416266181985031 Functional Loss - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43038135 chr6:43038134 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_10625 0 0 1 0 2 KLC4 chr6:43038193 5'GT 43038193 Upstream 60bp 10010 chr7 73944185 73944185 1 + T C rs2240357 73944186 + 73944166 73944206 41 TCAAGCGCCCCTGCACTTATGGAGTCCCCAAGCTGAAGCGG TCAAGCGCCCCTGCACTTACGGAGTCCCCAAGCTGAAGCGG < 41bp 0.733739041091798 0.525608396569334 NA NA prediction 0.416261289044928 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73944186 chr7:73944185 synonymous SNV . 0 20 hm7G_associated_SNPs_10626 0 0 1 0 1 GTF2IRD1 chr7:73944247 5'GT 73944247 Upstream 63bp 10011 chr1 156811950 156811950 1 - T C SKCM 156811949 - 156811929 156811969 41 TTGTGCACCGAGATCTAGCAGCCCGCAACTGCATGGTGTCC TTGTGCACCGAGATCTAGCGGCCCGCAACTGCATGGTGTCC < 41bp 0.708129104426869 0.495627681936905 NA NA prediction 0.416258208853739 Functional Loss - INSRR;NTRK1 ENSG00000027644;ENSG00000198400 CDS Human other chr1:156811949 chr1:156811950 synonymous SNV . 0 20 hm7G_associated_SNPs_10627 0 0 0 0 1 INSRR;NTRK1 chr1:156811904 5'GT 156811904 Upstream 47bp 10012 chr2 9498909 9498909 1 + T C OV 9498910 + 9498890 9498930 41 ACATGGCTTTCCACCAACCTGGGCATCCTGACCTGCATCGA ACATGGCTTTCCACCAACCCGGGCATCCTGACCTGCATCGA < 41bp 0.730382434564683 0.522255078066549 NA NA prediction 0.416254712996268 Functional Loss - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9498910 chr2:9498909 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10628 0 0 0 0 1 ASAP2 chr2:9498885 3'AG 9498885 Downstream 25bp 10013 chr19 39866509 39866509 1 + A G GBM 39866510 + 39866490 39866530 41 AGCCGGAACACCTTCCAGGAGGATGGCAGTGGCATGAAAGG AGCCGGAACACCTTCCAGGGGGATGGCAGTGGCATGAAAGG < 41bp 0.745341897991239 0.537225332830677 NA NA prediction 0.416233130321124 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39866510 chr19:39866509 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10629 0 0 1 0 1 SAMD4B chr19:39866529 5'GT 39866529 Upstream 21bp 10014 chr1 44072522 44072522 1 + T G SKCM 44072523 + 44072503 44072543 41 CCCTACTCGGATGAGATCGTGGTCCAGGTGACACCAGCCCA CCCTACTCGGATGAGATCGGGGTCCAGGTGACACCAGCCCA < 41bp 0.708086029707901 0.360671183380772 NA NA prediction 0.416172059415802 Functional Loss - PTPRF ENSG00000142949 CDS Human protein_coding chr1:44072523 chr1:44072522 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_10633 0 0 0 0 1 PTPRF chr1:44072485 3'AG 44072485 Downstream 38bp 10015 chr12 6499461 6499461 1 + A G OV 6499462 + 6499442 6499482 41 GAGTCCTCTGGACCTGACCAGGGAGCCGCAGTTGGAACCCG GAGTCCTCTGGACCTGACCGGGGAGCCGCAGTTGGAACCCG < 41bp 0.749449442249283 0.541366505247607 NA NA prediction 0.416165874003351 Functional Loss - LTBR ENSG00000111321 CDS Human protein_coding chr12:6499462 chr12:6499461 nonsynonymous SNV 0.020 1 20 hm7G_associated_SNPs_10634 0 0 1 0 1 LTBR chr12:6499506 5'GT 6499506 Upstream 46bp 10016 chr2 143718291 143718291 1 + T C UCS 143718292 + 143718272 143718312 41 GTGGGGTGCATTTTTACACTGGACAGCACTTTAATATTCCT GTGGGGTGCATTTTTACACCGGACAGCACTTTAATATTCCT < 41bp 0.708073914990987 0.496984772189557 NA NA prediction 0.416147829981974 Functional Loss - KYNU ENSG00000115919 CDS Human protein_coding chr2:143718292 chr2:143718291 synonymous SNV . 0 20 hm7G_associated_SNPs_10635 0 0 1 0 2 KYNU chr2:143718193 3'AG 143718193 Downstream 99bp 10017 chr2 143718291 143718291 1 + T C UCS 143718292 + 143718272 143718312 41 GTGGGGTGCATTTTTACACTGGACAGCACTTTAATATTCCT GTGGGGTGCATTTTTACACCGGACAGCACTTTAATATTCCT < 41bp 0.708073914990987 0.496984772189557 NA NA prediction 0.416147829981974 Functional Loss - KYNU ENSG00000115919 CDS Human protein_coding chr2:143718292 chr2:143718291 synonymous SNV . 0 20 hm7G_associated_SNPs_10635 0 0 1 0 2 KYNU chr2:143718339 5'GT 143718339 Upstream 49bp 10018 chr7 106797440 106797440 1 + T C LIHC 106797441 + 106797421 106797461 41 TCCAATAGGGAGATTCGGCTGATTCTTTTTTCATTGTAGAA TCCAATAGGGAGATTCGGCCGATTCTTTTTTCATTGTAGAA < 41bp 0.721516451134647 0.513480209184206 NA NA prediction 0.416072483900881 Functional Loss - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797441 chr7:106797440 synonymous SNV . 0 20 hm7G_associated_SNPs_10637 0 0 1 0 2 PRKAR2B chr7:106797429 3'AG 106797429 Downstream 12bp 10019 chr7 106797440 106797440 1 + T C LIHC 106797441 + 106797421 106797461 41 TCCAATAGGGAGATTCGGCTGATTCTTTTTTCATTGTAGAA TCCAATAGGGAGATTCGGCCGATTCTTTTTTCATTGTAGAA < 41bp 0.721516451134647 0.513480209184206 NA NA prediction 0.416072483900881 Functional Loss - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797441 chr7:106797440 synonymous SNV . 0 20 hm7G_associated_SNPs_10637 0 0 1 0 2 PRKAR2B chr7:106797494 5'GT 106797494 Upstream 55bp 10020 chr17 38172781 38172781 1 + A G COAD 38172782 + 38172762 38172802 41 AGCGGCCTTTTCCTCTACCAGGGGCTCCTGCAGGCCCTGGA AGCGGCCTTTTCCTCTACCGGGGGCTCCTGCAGGCCCTGGA < 41bp 0.761259009084971 0.55322992686159 NA NA prediction 0.416058164446761 Functional Loss - CSF3 ENSG00000108342 CDS Human protein_coding chr17:38172782 chr17:38172781 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_10638 0 0 0 0 1 CSF3 chr17:38172738 3'AG 38172738 Downstream 44bp 10021 chr3 46942547 46942547 1 + A G UCEC 46942548 + 46942528 46942568 41 CTTCGTGGCTGTGTGGGTCAGTGTCAGAGCTACCCTGGCCA CTTCGTGGCTGTGTGGGTCGGTGTCAGAGCTACCCTGGCCA < 41bp 0.747382313687567 0.539360710977293 NA NA prediction 0.416043205420549 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46942548 chr3:46942547 nonsynonymous SNV 0.973 0 20 hm7G_associated_SNPs_10639 0 0 0 0 2 PTH1R chr3:46942515 3'AG 46942515 Downstream 33bp 10022 chr3 46942547 46942547 1 + A G UCEC 46942548 + 46942528 46942568 41 CTTCGTGGCTGTGTGGGTCAGTGTCAGAGCTACCCTGGCCA CTTCGTGGCTGTGTGGGTCGGTGTCAGAGCTACCCTGGCCA < 41bp 0.747382313687567 0.539360710977293 NA NA prediction 0.416043205420549 Functional Loss - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46942548 chr3:46942547 nonsynonymous SNV 0.973 0 20 hm7G_associated_SNPs_10639 0 0 0 0 2 PTH1R chr3:46942575 5'GT 46942575 Upstream 29bp 10023 chr17 2266812 2266812 1 + T C rs2003968 2266813 + 2266793 2266833 41 AGGACAGGCTGGCTGCCTGTGCCCGCGAGTGTGTGGAGTCC AGGACAGGCTGGCTGCCTGCGCCCGCGAGTGTGTGGAGTCC < 41bp 0.707994561638561 0.497136693942205 NA NA prediction 0.415989123277122 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266813 chr17:2266812 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10640 0 0 1 0 2 SGSM2 chr17:2266759 3'AG 2266759 Downstream 54bp 10024 chr17 2266812 2266812 1 + T C rs2003968 2266813 + 2266793 2266833 41 AGGACAGGCTGGCTGCCTGTGCCCGCGAGTGTGTGGAGTCC AGGACAGGCTGGCTGCCTGCGCCCGCGAGTGTGTGGAGTCC < 41bp 0.707994561638561 0.497136693942205 NA NA prediction 0.415989123277122 Functional Loss - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266813 chr17:2266812 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10640 0 0 1 0 2 SGSM2 chr17:2266893 5'GT 2266893 Upstream 82bp 10025 chr20 49195847 49195847 1 + T C COAD 49195848 + 49195828 49195868 41 GAAGGTGCCAAATTCATCATGGGGGACTCTTCCGTGCAGGT GAAGGTGCCAAATTCATCACGGGGGACTCTTCCGTGCAGGT < 41bp 0.707993320179764 0.493974277669847 NA NA prediction 0.415986640359528 Functional Loss - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195848 chr20:49195847 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_10641 0 0 1 0 1 PTPN1 chr20:49195866 5'GT 49195866 Upstream 20bp 10026 chr11 67050628 67050628 1 + T C KIRC 67050629 + 67050609 67050649 41 TGCCCGACTCCTTCTCCCCTGAACTACGCTCCCTGCTGGAG TGCCCGACTCCTTCTCCCCCGAACTACGCTCCCTGCTGGAG < 41bp 0.729944127118807 0.521958246808567 NA NA prediction 0.415971760620479 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67050629 chr11:67050628 synonymous SNV . 0 20 hm7G_associated_SNPs_10642 0 0 1 0 1 GRK2 chr11:67050599 3'AG 67050599 Downstream 30bp 10027 chr20 18143058 18143058 1 + A G rs140745812 18143059 + 18143039 18143079 41 GCGATGGAGTCATAGACCCAGGGATGGAGTACGTCCCACCC GCGATGGAGTCATAGACCCGGGGATGGAGTACGTCCCACCC < 41bp 0.707979666326285 0.498315953566769 NA NA prediction 0.41595933265257 Functional Loss - KAT14 ENSG00000149474 CDS Human protein_coding chr20:18143059 chr20:18143058 synonymous SNV . 0 20 hm7G_associated_SNPs_10644 0 0 0 0 1 KAT14 chr20:18143021 3'AG 18143021 Downstream 38bp 10028 chr2 135655994 135655994 1 + T G UCEC 135655995 + 135655975 135656015 41 TAGAGTCCATGGAAGAATTTGATGAAGAAACAAAGGTATAA TAGAGTCCATGGAAGAATTGGATGAAGAAACAAAGGTATAA < 41bp 0.890892780346232 0.682933076167312 NA NA prediction 0.415919408357841 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135655995 chr2:135655994 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10645 0 0 0 0 2 ACMSD chr2:135655911 3'AG 135655911 Downstream 84bp 10029 chr2 135655994 135655994 1 + T G UCEC 135655995 + 135655975 135656015 41 TAGAGTCCATGGAAGAATTTGATGAAGAAACAAAGGTATAA TAGAGTCCATGGAAGAATTGGATGAAGAAACAAAGGTATAA < 41bp 0.890892780346232 0.682933076167312 NA NA prediction 0.415919408357841 Functional Loss - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135655995 chr2:135655994 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10645 0 0 0 0 2 ACMSD chr2:135656009 5'GT 135656009 Upstream 16bp 10030 chr17 4496372 4496372 1 + A G COAD 4496373 + 4496353 4496393 41 GGTTCTCTGGGGAGACCTCAGCTGCGGCTCTATCACCCATG GGTTCTCTGGGGAGACCTCGGCTGCGGCTCTATCACCCATG < 41bp 0.788346160753496 0.580386957543825 NA NA prediction 0.415918406419341 Functional Loss - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4496373 chr17:4496372 synonymous SNV . 0 20 hm7G_associated_SNPs_10646 0 0 0 0 1 SMTNL2 chr17:4496466 5'GT 4496466 Upstream 95bp 10031 chr21 47817226 47817226 1 + A G LAML 47817227 + 47817207 47817247 41 CAAAGAACAGTCGGAGACCAGGAAGCAGGCTGAGAAGGACC CAAAGAACAGTCGGAGACCGGGAAGCAGGCTGAGAAGGACC < 41bp 0.717438234798936 0.509479103121829 NA NA prediction 0.415918263354214 Functional Loss - PCNT ENSG00000160299 CDS Human protein_coding chr21:47817227 chr21:47817226 nonsynonymous SNV 0.293 1 20 hm7G_associated_SNPs_10647 0 0 1 0 1 PCNT chr21:47817179 3'AG 47817179 Downstream 48bp 10032 chr3 184295588 184295588 1 + A G STAD 184295589 + 184295569 184295609 41 AGCCGCCCTGCCGAGTTTGAGACCACAAGTGAGAGAGGTTA AGCCGCCCTGCCGAGTTTGGGACCACAAGTGAGAGAGGTTA < 41bp 0.707942611724177 0.499294011155745 NA NA prediction 0.415885223448354 Functional Loss - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295589 chr3:184295588 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_10648 0 0 0 0 1 EPHB3 chr3:184295605 5'GT 184295605 Upstream 18bp 10033 chr12 120502657 120502657 1 + A G UCEC 120502658 + 120502638 120502678 41 CCGGGTGCTAATCCTGGAGAGGCAGGGCCATGACAAGGACC CCGGGTGCTAATCCTGGAGGGGCAGGGCCATGACAAGGACC < 41bp 0.707937180389647 0.47820739147429 NA NA prediction 0.415874360779295 Functional Loss - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120502658 chr12:120502657 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_10649 0 0 0 0 1 BICDL1 chr12:120502683 5'GT 120502683 Upstream 27bp 10034 chr17 7245371 7245371 1 + A G rs4796407 7245372 + 7245352 7245392 41 TGGCCCGCCTGGGTCCACCAGAGCCCATGATGGCGGTATGC TGGCCCGCCTGGGTCCACCGGAGCCCATGATGGCGGTATGC < 41bp 0.742014366972137 0.534083715243894 NA NA prediction 0.415861303456485 Functional Loss - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7245372 chr17:7245371 synonymous SNV . 0 20 hm7G_associated_SNPs_10650 0 0 0 0 1 ACAP1 chr17:7245386 5'GT 7245386 Upstream 16bp 10035 chr3 151538178 151538178 1 + T G LUAD 151538179 + 151538159 151538199 41 CTTTTATTTCAGCTCTAAGTGGTTATGACTTGCTGTCAAGA CTTTTATTTCAGCTCTAAGGGGTTATGACTTGCTGTCAAGA < 41bp 0.707907625970249 0.388158565591795 NA NA prediction 0.415815251940498 Functional Loss - AADAC ENSG00000114771 CDS Human protein_coding chr3:151538179 chr3:151538178 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10652 0 0 0 0 2 AADAC chr3:151538171 3'AG 151538171 Downstream 8bp 10036 chr3 151538178 151538178 1 + T G LUAD 151538179 + 151538159 151538199 41 CTTTTATTTCAGCTCTAAGTGGTTATGACTTGCTGTCAAGA CTTTTATTTCAGCTCTAAGGGGTTATGACTTGCTGTCAAGA < 41bp 0.707907625970249 0.388158565591795 NA NA prediction 0.415815251940498 Functional Loss - AADAC ENSG00000114771 CDS Human protein_coding chr3:151538179 chr3:151538178 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10652 0 0 0 0 2 AADAC chr3:151538240 5'GT 151538240 Upstream 63bp 10037 chr10 99211872 99211872 1 + T C COAD 99211873 + 99211853 99211893 41 GTGGTCCTGGTGATCGTGCTGACAGGCTCCATTGTAGCTAT GTGGTCCTGGTGATCGTGCCGACAGGCTCCATTGTAGCTAT < 41bp 0.741398657119741 0.533504267918058 NA NA prediction 0.415788778403365 Functional Loss - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211873 chr10:99211872 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_10655 0 0 1 0 1 ZDHHC16 chr10:99211847 3'AG 99211847 Downstream 26bp 10038 chr8 31004953 31004953 1 + T C THCA 31004954 + 31004934 31004974 41 GATGTTCCCCCAGCTATTCTGGCAACAAACAAGATACTGGT GATGTTCCCCCAGCTATTCCGGCAACAAACAAGATACTGGT < 41bp 0.729306849203076 0.521431600065787 NA NA prediction 0.415750498274579 Functional Loss - WRN ENSG00000165392 CDS Human protein_coding chr8:31004954 chr8:31004953 nonsynonymous SNV 0.533 4 20 hm7G_associated_SNPs_10658 0 0 1 0 2 WRN chr8:31004880 3'AG 31004880 Downstream 74bp 10039 chr8 31004953 31004953 1 + T C THCA 31004954 + 31004934 31004974 41 GATGTTCCCCCAGCTATTCTGGCAACAAACAAGATACTGGT GATGTTCCCCCAGCTATTCCGGCAACAAACAAGATACTGGT < 41bp 0.729306849203076 0.521431600065787 NA NA prediction 0.415750498274579 Functional Loss - WRN ENSG00000165392 CDS Human protein_coding chr8:31004954 chr8:31004953 nonsynonymous SNV 0.533 4 20 hm7G_associated_SNPs_10658 0 0 1 0 2 WRN chr8:31004992 5'GT 31004992 Upstream 40bp 10040 chr6 7575574 7575574 1 + T C UCEC 7575575 + 7575555 7575595 41 AAGTCGTTGTTGGCCACTATGAAGACAGAACTACAGAAAGC AAGTCGTTGTTGGCCACTACGAAGACAGAACTACAGAAAGC < 41bp 0.732626875829005 0.524759335878416 NA NA prediction 0.415735079901177 Functional Loss - DSP ENSG00000096696 CDS Human protein_coding chr6:7575575 chr6:7575574 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10659 0 0 1 0 1 DSP chr6:7575528 3'AG 7575528 Downstream 47bp 10041 chr16 19481068 19481068 1 + T C UCEC 19481069 + 19481049 19481089 41 TCCGGAGGGATCACCAAGCTGATCTTTTGCTGGGACTTCAC TCCGGAGGGATCACCAAGCCGATCTTTTGCTGGGACTTCAC < 41bp 0.743713828520804 0.53584903109017 NA NA prediction 0.415729594861267 Functional Loss - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19481069 chr16:19481068 nonsynonymous SNV 0.800 3 20 hm7G_associated_SNPs_10660 0 0 0 0 1 TMC5 chr16:19481003 3'AG 19481003 Downstream 66bp 10042 chr9 127616537 127616537 1 + A G rs12375547 127616538 + 127616518 127616558 41 TGCTGCTCACAGGCTCAGAAGATGGCTGCGTGTATGGCTGG TGCTGCTCACAGGCTCAGAGGATGGCTGCGTGTATGGCTGG < 41bp 0.750329675540378 0.542477671211483 NA NA prediction 0.415704008657791 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127616538 chr9:127616537 synonymous SNV 0.871 0 20 hm7G_associated_SNPs_10662 0 0 0 0 3 WDR38 chr9:127616484 3'AG 127616484 Downstream 54bp 10043 chr9 127616537 127616537 1 + A G rs12375547 127616538 + 127616518 127616558 41 TGCTGCTCACAGGCTCAGAAGATGGCTGCGTGTATGGCTGG TGCTGCTCACAGGCTCAGAGGATGGCTGCGTGTATGGCTGG < 41bp 0.750329675540378 0.542477671211483 NA NA prediction 0.415704008657791 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127616538 chr9:127616537 synonymous SNV 0.871 0 20 hm7G_associated_SNPs_10662 0 0 0 0 3 WDR38 chr9:127616517 3'AG 127616517 Downstream 21bp 10044 chr9 127616537 127616537 1 + A G rs12375547 127616538 + 127616518 127616558 41 TGCTGCTCACAGGCTCAGAAGATGGCTGCGTGTATGGCTGG TGCTGCTCACAGGCTCAGAGGATGGCTGCGTGTATGGCTGG < 41bp 0.750329675540378 0.542477671211483 NA NA prediction 0.415704008657791 Functional Loss - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127616538 chr9:127616537 synonymous SNV 0.871 0 20 hm7G_associated_SNPs_10662 0 0 0 0 3 WDR38 chr9:127616604 5'GT 127616604 Upstream 68bp 10045 chr7 30868321 30868321 1 + A G LUSC 30868322 + 30868302 30868342 41 CAGTTGCTGCCGTCTGACAAGGTGGATGGTGAGCTGGGTGC CAGTTGCTGCCGTCTGACAGGGTGGATGGTGAGCTGGGTGC < 41bp 0.746241464458568 0.538393979131254 NA NA prediction 0.415694970654627 Functional Loss - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30868322 chr7:30868321 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_10663 0 0 0 0 2 MINDY4 chr7:30868295 3'AG 30868295 Downstream 27bp 10046 chr7 30868321 30868321 1 + A G LUSC 30868322 + 30868302 30868342 41 CAGTTGCTGCCGTCTGACAAGGTGGATGGTGAGCTGGGTGC CAGTTGCTGCCGTCTGACAGGGTGGATGGTGAGCTGGGTGC < 41bp 0.746241464458568 0.538393979131254 NA NA prediction 0.415694970654627 Functional Loss - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30868322 chr7:30868321 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_10663 0 0 0 0 2 MINDY4 chr7:30868353 5'GT 30868353 Upstream 33bp 10047 chr3 47889849 47889849 1 + A G UCS 47889850 + 47889830 47889870 41 TTGAGAACCTGGTGCTGCAAGCGAAAATCCACATGCCTGAG TTGAGAACCTGGTGCTGCAGGCGAAAATCCACATGCCTGAG < 41bp 0.727642263156697 0.519798652635988 NA NA prediction 0.415687221041417 Functional Loss - DHX30 ENSG00000132153 CDS Human protein_coding chr3:47889850 chr3:47889849 synonymous SNV . 0 20 hm7G_associated_SNPs_10664 0 0 1 0 1 DHX30 chr3:47889876 5'GT 47889876 Upstream 28bp 10048 chr20 47569297 47569297 1 + T C UCEC 47569298 + 47569278 47569318 41 ATTCATGAGGGTACTATCCTGCAGACAGTGAGAACATGTTA ATTCATGAGGGTACTATCCCGCAGACAGTGAGAACATGTTA < 41bp 0.727982142074401 0.52015162856049 NA NA prediction 0.415661027027822 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47569298 chr20:47569297 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10665 0 0 1 0 1 ARFGEF2 chr20:47569242 3'AG 47569242 Downstream 56bp 10049 chr9 104079706 104079706 1 + T C rs16920154 104079707 + 104079687 104079727 41 CTCCTTCCAAACCCAAGCCTGAGGATCCCCGTGGAGTACCC CTCCTTCCAAACCCAAGCCCGAGGATCCCCGTGGAGTACCC < 41bp 0.725148201579266 0.517326084121589 NA NA prediction 0.415644234915354 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104079707 chr9:104079706 synonymous SNV . 0 20 hm7G_associated_SNPs_10666 0 0 0 0 2 PLPPR1 chr9:104079647 3'AG 104079647 Downstream 60bp 10050 chr9 104079706 104079706 1 + T C rs16920154 104079707 + 104079687 104079727 41 CTCCTTCCAAACCCAAGCCTGAGGATCCCCGTGGAGTACCC CTCCTTCCAAACCCAAGCCCGAGGATCCCCGTGGAGTACCC < 41bp 0.725148201579266 0.517326084121589 NA NA prediction 0.415644234915354 Functional Loss - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104079707 chr9:104079706 synonymous SNV . 0 20 hm7G_associated_SNPs_10666 0 0 0 0 2 PLPPR1 chr9:104079778 5'GT 104079778 Upstream 73bp 10051 chr12 112183962 112183962 1 + T C KIRP 112183963 + 112183943 112183983 41 GATAGGAGAAAGCCAAAGCTGAAGGACTTTGGAACCTTTTC GATAGGAGAAAGCCAAAGCCGAAGGACTTTGGAACCTTTTC < 41bp 0.722359364383446 0.51453811888617 NA NA prediction 0.415642490994552 Functional Loss - ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112183963 chr12:112183962 synonymous SNV . 0 20 hm7G_associated_SNPs_10667 0 0 1 0 1 ACAD10 chr12:112183948 3'AG 112183948 Downstream 15bp 10052 chr1 17964425 17964425 1 + A G BRCA 17964426 + 17964406 17964446 41 CGCCTCTTCCAGGAGCTGCAGGACCTGCAGAAGGACCTGGC CGCCTCTTCCAGGAGCTGCGGGACCTGCAGAAGGACCTGGC < 41bp 0.707807461571112 0.499183303826177 NA NA prediction 0.415614923142224 Functional Loss - ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17964426 chr1:17964425 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10670 0 0 1 0 2 ARHGEF10L chr1:17964383 3'AG 17964383 Downstream 43bp 10053 chr1 17964425 17964425 1 + A G BRCA 17964426 + 17964406 17964446 41 CGCCTCTTCCAGGAGCTGCAGGACCTGCAGAAGGACCTGGC CGCCTCTTCCAGGAGCTGCGGGACCTGCAGAAGGACCTGGC < 41bp 0.707807461571112 0.499183303826177 NA NA prediction 0.415614923142224 Functional Loss - ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17964426 chr1:17964425 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10670 0 0 1 0 2 ARHGEF10L chr1:17964498 5'GT 17964498 Upstream 74bp 10054 chrX 14592657 14592657 1 + T C LIHC 14592658 + 14592638 14592678 41 ACATATTTATCAACAGCTTTGGGTCAATAGCAGAAACTACA ACATATTTATCAACAGCTTCGGGTCAATAGCAGAAACTACA < 41bp 0.720179874111988 0.512374325104198 NA NA prediction 0.415611098015579 Functional Loss - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14592658 chrX:14592657 synonymous SNV . 0 20 hm7G_associated_SNPs_10671 0 0 0 0 2 GLRA2 chrX:14592614 3'AG 14592614 Downstream 44bp 10055 chrX 14592657 14592657 1 + T C LIHC 14592658 + 14592638 14592678 41 ACATATTTATCAACAGCTTTGGGTCAATAGCAGAAACTACA ACATATTTATCAACAGCTTCGGGTCAATAGCAGAAACTACA < 41bp 0.720179874111988 0.512374325104198 NA NA prediction 0.415611098015579 Functional Loss - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14592658 chrX:14592657 synonymous SNV . 0 20 hm7G_associated_SNPs_10671 0 0 0 0 2 GLRA2 chrX:14592681 5'GT 14592681 Upstream 25bp 10056 chr12 125558432 125558432 1 + T C UCEC 125558433 + 125558413 125558453 41 CATTTTTAGAGAGTTATGATGACTTGTACCATTGGTCCGTT CATTTTTAGAGAGTTATGACGACTTGTACCATTGGTCCGTT < 41bp 0.727368747750287 0.519578937249114 NA NA prediction 0.415579621002347 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125558433 chr12:125558432 synonymous SNV . 0 20 hm7G_associated_SNPs_10672 0 0 1 0 2 AACS chr12:125558422 3'AG 125558422 Downstream 11bp 10057 chr12 125558432 125558432 1 + T C UCEC 125558433 + 125558413 125558453 41 CATTTTTAGAGAGTTATGATGACTTGTACCATTGGTCCGTT CATTTTTAGAGAGTTATGACGACTTGTACCATTGGTCCGTT < 41bp 0.727368747750287 0.519578937249114 NA NA prediction 0.415579621002347 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125558433 chr12:125558432 synonymous SNV . 0 20 hm7G_associated_SNPs_10672 0 0 1 0 2 AACS chr12:125558525 5'GT 125558525 Upstream 94bp 10058 chr16 56906659 56906659 1 + A G KIRP 56906660 + 56906640 56906680 41 TCTTCTTCCCCTCGGCCACAGGCATCCTGGCAGGGGCCAAC TCTTCTTCCCCTCGGCCACGGGCATCCTGGCAGGGGCCAAC < 41bp 0.750755268927674 0.542992265562072 NA NA prediction 0.415526006731204 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56906660 chr16:56906659 synonymous SNV . 0 20 hm7G_associated_SNPs_10674 0 0 0 0 2 SLC12A3 chr16:56906568 3'AG 56906568 Downstream 92bp 10059 chr16 56906659 56906659 1 + A G KIRP 56906660 + 56906640 56906680 41 TCTTCTTCCCCTCGGCCACAGGCATCCTGGCAGGGGCCAAC TCTTCTTCCCCTCGGCCACGGGCATCCTGGCAGGGGCCAAC < 41bp 0.750755268927674 0.542992265562072 NA NA prediction 0.415526006731204 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56906660 chr16:56906659 synonymous SNV . 0 20 hm7G_associated_SNPs_10674 0 0 0 0 2 SLC12A3 chr16:56906698 5'GT 56906698 Upstream 40bp 10060 chr20 62851108 62851108 1 + A G CESC 62851109 + 62851089 62851129 41 AAATGGAACCCTGGACTTGAGCATGCACAAACACCGCAAAC AAATGGAACCCTGGACTTGGGCATGCACAAACACCGCAAAC < 41bp 0.716510129893719 0.50875225370406 NA NA prediction 0.415515752379317 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62851109 chr20:62851108 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_10675 0 0 0 0 1 MYT1 chr20:62851066 3'AG 62851066 Downstream 43bp 10061 chr3 44409062 44409062 1 + T C UCEC 44409063 + 44409043 44409083 41 CAAAGCTTGAATACTAATATGCATACCCAGCCTCTCAAAGA CAAAGCTTGAATACTAATACGCATACCCAGCCTCTCAAAGA < 41bp 0.730420003690954 0.522673221456932 NA NA prediction 0.415493564468044 Functional Loss - TCAIM ENSG00000179152 CDS Human protein_coding chr3:44409063 chr3:44409062 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_10677 0 0 1 0 1 TCAIM chr3:44409024 3'AG 44409024 Downstream 39bp 10062 chr16 67291324 67291324 1 + A G LUAD 67291325 + 67291305 67291345 41 AAACCCACCCTGAACCAGGAGCTGCATGAACACGTGGGTAT AAACCCACCCTGAACCAGGGGCTGCATGAACACGTGGGTAT < 41bp 0.707742826066577 0.49315790510106 NA NA prediction 0.415485652133154 Functional Loss - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67291325 chr16:67291324 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10679 0 0 0 0 2 SLC9A5 chr16:67291248 3'AG 67291248 Downstream 77bp 10063 chr16 67291324 67291324 1 + A G LUAD 67291325 + 67291305 67291345 41 AAACCCACCCTGAACCAGGAGCTGCATGAACACGTGGGTAT AAACCCACCCTGAACCAGGGGCTGCATGAACACGTGGGTAT < 41bp 0.707742826066577 0.49315790510106 NA NA prediction 0.415485652133154 Functional Loss - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67291325 chr16:67291324 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10679 0 0 0 0 2 SLC9A5 chr16:67291337 5'GT 67291337 Upstream 14bp 10064 chr10 74628491 74628491 1 + T C COAD 74628492 + 74628472 74628512 41 CATGAAAATGCAGCAACGCTGAATGATGTAAAGACATTGGT CATGAAAATGCAGCAACGCCGAATGATGTAAAGACATTGGT < 41bp 0.73107503291077 0.523353151977436 NA NA prediction 0.415443761866667 Functional Loss - MCU ENSG00000156026 CDS Human protein_coding chr10:74628492 chr10:74628491 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_10680 0 0 0 0 1 MCU chr10:74628461 3'AG 74628461 Downstream 31bp 10065 chr12 7260932 7260932 1 - T C LIHC 7260931 - 7260911 7260951 41 GAGAGCAGCACGGACATCAAGGCTCCAGAGGGCTTTGCTGT GAGAGCAGCACGGACATCAGGGCTCCAGAGGGCTTTGCTGT < 41bp 0.781774268492666 0.574052480188585 NA NA prediction 0.415443576608161 Functional Loss - C1RL ENSG00000139178 CDS Human protein_coding chr12:7260931 chr12:7260932 nonsynonymous SNV 0.891 0 20 hm7G_associated_SNPs_10681 0 0 1 0 1 C1RL chr12:7260847 5'GT 7260847 Upstream 86bp 10066 chr2 88482302 88482302 1 + A G HNSC 88482303 + 88482283 88482323 41 ATCATCCACAGGACTGTCCAGCAGGGAGACTTCTCTCTCTC ATCATCCACAGGACTGTCCGGCAGGGAGACTTCTCTCTCTC < 41bp 0.723743560358449 0.516022807482776 NA NA prediction 0.415441505751345 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482303 chr2:88482302 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_10682 0 0 0 1 2 THNSL2 chr2:88482218 3'AG 88482218 Downstream 85bp 10067 chr2 88482302 88482302 1 + A G HNSC 88482303 + 88482283 88482323 41 ATCATCCACAGGACTGTCCAGCAGGGAGACTTCTCTCTCTC ATCATCCACAGGACTGTCCGGCAGGGAGACTTCTCTCTCTC < 41bp 0.723743560358449 0.516022807482776 NA NA prediction 0.415441505751345 Functional Loss - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482303 chr2:88482302 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_10682 0 0 0 1 2 THNSL2 chr2:88482366 5'GT 88482366 Upstream 65bp 10068 chr20 29625894 29625894 1 + T C LUSC 29625895 + 29625875 29625915 41 TCGCCCTGAAATCTGGCTATGGAAAATATCTTGGTATAAAT TCGCCCTGAAATCTGGCTACGGAAAATATCTTGGTATAAAT < 41bp 0.707827779855313 0.500122160004395 NA NA prediction 0.415411239701837 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29625895 chr20:29625894 synonymous SNV . 0 20 hm7G_associated_SNPs_10683 0 0 1 0 2 FRG1BP;FRG1DP chr20:29625873 3'AG 29625873 Downstream 22bp 10069 chr20 29625894 29625894 1 + T C LUSC 29625895 + 29625875 29625915 41 TCGCCCTGAAATCTGGCTATGGAAAATATCTTGGTATAAAT TCGCCCTGAAATCTGGCTACGGAAAATATCTTGGTATAAAT < 41bp 0.707827779855313 0.500122160004395 NA NA prediction 0.415411239701837 Functional Loss - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29625895 chr20:29625894 synonymous SNV . 0 20 hm7G_associated_SNPs_10683 0 0 1 0 2 FRG1BP;FRG1DP chr20:29625984 5'GT 29625984 Upstream 91bp 10070 chr17 78163574 78163574 1 + A G LUAD 78163575 + 78163555 78163595 41 GAGAAGGACATTCTGGAGCAGAGCCTGGACGAGGCGCGGGG GAGAAGGACATTCTGGAGCGGAGCCTGGACGAGGCGCGGGG < 41bp 0.71899321104261 0.51129418892049 NA NA prediction 0.41539804424424 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78163575 chr17:78163574 nonsynonymous SNV 0.348 4 20 hm7G_associated_SNPs_10684 0 0 0 0 2 CARD14 chr17:78163552 3'AG 78163552 Downstream 23bp 10071 chr17 78163574 78163574 1 + A G LUAD 78163575 + 78163555 78163595 41 GAGAAGGACATTCTGGAGCAGAGCCTGGACGAGGCGCGGGG GAGAAGGACATTCTGGAGCGGAGCCTGGACGAGGCGCGGGG < 41bp 0.71899321104261 0.51129418892049 NA NA prediction 0.41539804424424 Functional Loss - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78163575 chr17:78163574 nonsynonymous SNV 0.348 4 20 hm7G_associated_SNPs_10684 0 0 0 0 2 CARD14 chr17:78163671 5'GT 78163671 Upstream 98bp 10072 chr10 75535310 75535310 1 + T G UCEC 75535311 + 75535291 75535331 41 TATTTCAGTTGGAAAGAGATGTGGCTGCAAGATTATTGGCA TATTTCAGTTGGAAAGAGAGGTGGCTGCAAGATTATTGGCA < 41bp 0.707698756294255 0.391438522517422 NA NA prediction 0.415397512588509 Functional Loss - FUT11 ENSG00000196968 CDS Human protein_coding chr10:75535311 chr10:75535310 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10685 0 0 1 0 1 FUT11 chr10:75535299 3'AG 75535299 Downstream 12bp 10073 chr7 4830771 4830771 1 + A G GBM 4830772 + 4830752 4830792 41 TTTATTGCTGTCAAAGATGAGGACCCTGGCTCACAGTCCAG TTTATTGCTGTCAAAGATGGGGACCCTGGCTCACAGTCCAG < 41bp 0.733419716179487 0.525737380279842 NA NA prediction 0.415364671799291 Functional Loss - AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830772 chr7:4830771 nonsynonymous SNV 0.888 3 20 hm7G_associated_SNPs_10687 0 0 1 0 1 AP5Z1 chr7:4830746 3'AG 4830746 Downstream 26bp 10074 chr5 139745813 139745813 1 + A G UCEC 139745814 + 139745794 139745834 41 TTGATGCTTTCCTGGGCCTAGCCACACCAAAGCTCATGGTA TTGATGCTTTCCTGGGCCTGGCCACACCAAAGCTCATGGTA < 41bp 0.707669648175846 0.487913064306612 NA NA prediction 0.415339296351692 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139745814 chr5:139745813 synonymous SNV . 0 20 hm7G_associated_SNPs_10688 0 0 0 0 2 SLC4A9 chr5:139745736 3'AG 139745736 Downstream 78bp 10075 chr5 139745813 139745813 1 + A G UCEC 139745814 + 139745794 139745834 41 TTGATGCTTTCCTGGGCCTAGCCACACCAAAGCTCATGGTA TTGATGCTTTCCTGGGCCTGGCCACACCAAAGCTCATGGTA < 41bp 0.707669648175846 0.487913064306612 NA NA prediction 0.415339296351692 Functional Loss - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139745814 chr5:139745813 synonymous SNV . 0 20 hm7G_associated_SNPs_10688 0 0 0 0 2 SLC4A9 chr5:139745849 5'GT 139745849 Upstream 37bp 10076 chr8 22969288 22969288 1 + T C LGG 22969289 + 22969269 22969309 41 GAAGTTCCCCAGCAGACAGTGGCCCCACAGCAACAGAGGCA GAAGTTCCCCAGCAGACAGCGGCCCCACAGCAACAGAGGCA < 41bp 0.722944757022155 0.515275284645288 NA NA prediction 0.415338944753735 Functional Loss - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969289 chr8:22969288 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10689 0 0 0 0 2 TNFRSF10C chr8:22969233 3'AG 22969233 Downstream 56bp 10077 chr8 22969288 22969288 1 + T C LGG 22969289 + 22969269 22969309 41 GAAGTTCCCCAGCAGACAGTGGCCCCACAGCAACAGAGGCA GAAGTTCCCCAGCAGACAGCGGCCCCACAGCAACAGAGGCA < 41bp 0.722944757022155 0.515275284645288 NA NA prediction 0.415338944753735 Functional Loss - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969289 chr8:22969288 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10689 0 0 0 0 2 TNFRSF10C chr8:22969338 5'GT 22969338 Upstream 51bp 10078 chr9 139874695 139874695 1 + A G SKCM 139874696 + 139874676 139874716 41 ACCGCCTTCTGCAAGGCCCAGGGCTTCACAGAGGATACCAT ACCGCCTTCTGCAAGGCCCGGGGCTTCACAGAGGATACCAT < 41bp 0.707668664596417 0.483989951087456 NA NA prediction 0.415337329192834 Functional Loss - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139874696 chr9:139874695 nonsynonymous SNV 0.759 0 20 hm7G_associated_SNPs_10690 0 0 0 0 2 PTGDS chr9:139874635 3'AG 139874635 Downstream 61bp 10079 chr9 139874695 139874695 1 + A G SKCM 139874696 + 139874676 139874716 41 ACCGCCTTCTGCAAGGCCCAGGGCTTCACAGAGGATACCAT ACCGCCTTCTGCAAGGCCCGGGGCTTCACAGAGGATACCAT < 41bp 0.707668664596417 0.483989951087456 NA NA prediction 0.415337329192834 Functional Loss - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139874696 chr9:139874695 nonsynonymous SNV 0.759 0 20 hm7G_associated_SNPs_10690 0 0 0 0 2 PTGDS chr9:139874736 5'GT 139874736 Upstream 42bp 10080 chr11 47305929 47305929 1 + T C COAD 47305930 + 47305910 47305950 41 CCTTGGATTTTGGCAGATGTGGACCCTCTGACACATGCAGC CCTTGGATTTTGGCAGATGCGGACCCTCTGACACATGCAGC < 41bp 0.728851624863086 0.521184791436939 NA NA prediction 0.415333666852295 Functional Loss - MADD ENSG00000110514 CDS Human protein_coding chr11:47305930 chr11:47305929 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10692 0 0 1 0 1 MADD chr11:47305926 3'AG 47305926 Downstream 4bp 10081 chr9 102609889 102609889 1 + T G LUAD 102609890 + 102609870 102609910 41 TGCCTGTCAGCACTGAGCATGATCACAGGTAAGCACCACCT TGCCTGTCAGCACTGAGCAGGATCACAGGTAAGCACCACCT < 41bp 0.901044829828354 0.693385209690492 NA NA prediction 0.415319240275724 Functional Loss - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102609890 chr9:102609889 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10694 0 0 0 0 1 NR4A3 chr9:102609897 5'GT 102609897 Upstream 9bp 10082 chr5 156890164 156890164 1 + A G UCEC 156890165 + 156890145 156890185 41 CCAGATTGTCAATGACCTCAGCCCTGAGGTGCCCAGCAATG CCAGATTGTCAATGACCTCGGCCCTGAGGTGCCCAGCAATG < 41bp 0.769339523878316 0.561695771127852 NA NA prediction 0.41528750550093 Functional Loss - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156890165 chr5:156890164 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_10696 0 0 0 0 1 NIPAL4 chr5:156890102 3'AG 156890102 Downstream 63bp 10083 chr19 12976269 12976269 1 + A G UCEC 12976270 + 12976250 12976290 41 TTCTTCGGAGACACACCAGAGGAGCTATTTGGACAGGTCAT TTCTTCGGAGACACACCAGGGGAGCTATTTGGACAGGTCAT < 41bp 0.719354822208564 0.511711801093328 NA NA prediction 0.415286042230471 Functional Loss - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12976270 chr19:12976269 nonsynonymous SNV 0.899 4 20 hm7G_associated_SNPs_10697 0 0 0 0 1 MAST1 chr19:12976295 5'GT 12976295 Upstream 27bp 10084 chr4 81188280 81188280 1 + T G OV 81188281 + 81188261 81188301 41 GTGGGCATCGGTTTCCATCTGCAGATCTACCCGGATGGCAA GTGGGCATCGGTTTCCATCGGCAGATCTACCCGGATGGCAA < 41bp 0.895104298698423 0.687478169524632 NA NA prediction 0.41525225834758 Functional Loss - FGF5 ENSG00000138675 CDS Human protein_coding chr4:81188281 chr4:81188280 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10698 0 0 0 0 1 FGF5 chr4:81188333 5'GT 81188333 Upstream 54bp 10085 chr2 73451100 73451100 1 + A G GBM 73451101 + 73451081 73451121 41 GAGAGTTTCTTAACTGTGAAGGATCTGGCCTCTTTGTGCTT GAGAGTTTCTTAACTGTGAGGGATCTGGCCTCTTTGTGCTT < 41bp 0.719970547190645 0.512369653213489 NA NA prediction 0.415201787954312 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73451101 chr2:73451100 synonymous SNV . 0 20 hm7G_associated_SNPs_10701 0 0 1 2 2 SMYD5 chr2:73451075 3'AG 73451075 Downstream 26bp 10086 chr2 73451100 73451100 1 + A G GBM 73451101 + 73451081 73451121 41 GAGAGTTTCTTAACTGTGAAGGATCTGGCCTCTTTGTGCTT GAGAGTTTCTTAACTGTGAGGGATCTGGCCTCTTTGTGCTT < 41bp 0.719970547190645 0.512369653213489 NA NA prediction 0.415201787954312 Functional Loss - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73451101 chr2:73451100 synonymous SNV . 0 20 hm7G_associated_SNPs_10701 0 0 1 2 2 SMYD5 chr2:73451131 5'GT 73451131 Upstream 32bp 10087 chr9 35793020 35793020 1 + A G LUAD 35793021 + 35793001 35793041 41 AGCACCAGGTGTATGCCCGAGAGCCAGGGGGCCCCGAGCAG AGCACCAGGTGTATGCCCGGGAGCCAGGGGGCCCCGAGCAG < 41bp 0.71221748371553 0.504621813572433 NA NA prediction 0.415191340286194 Functional Loss - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35793021 chr9:35793020 synonymous SNV . 0 20 hm7G_associated_SNPs_10702 0 0 0 0 1 NPR2 chr9:35793072 5'GT 35793072 Upstream 53bp 10088 chr3 47385075 47385075 1 + T G UCEC 47385076 + 47385056 47385096 41 CAACCACCACACAGCCACCTGGCACCCTGCAGCTGGCATGC CAACCACCACACAGCCACCGGGCACCCTGCAGCTGGCATGC < 41bp 0.707592290294165 0.363291616621649 NA NA prediction 0.415184580588329 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47385076 chr3:47385075 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10703 0 0 1 0 1 KLHL18 chr3:47385045 3'AG 47385045 Downstream 31bp 10089 chr2 70165308 70165308 1 + T G OV 70165309 + 70165289 70165329 41 GCAGCAGTGTGAGCGACTCTGACGAGCGGGGCAGCATGCAG GCAGCAGTGTGAGCGACTCGGACGAGCGGGGCAGCATGCAG < 41bp 0.896890276867576 0.689303353042266 NA NA prediction 0.415173847650619 Functional Loss - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70165309 chr2:70165308 synonymous SNV . 0 20 hm7G_associated_SNPs_10704 0 0 1 0 2 MXD1 chr2:70165229 3'AG 70165229 Downstream 80bp 10090 chr2 70165308 70165308 1 + T G OV 70165309 + 70165289 70165329 41 GCAGCAGTGTGAGCGACTCTGACGAGCGGGGCAGCATGCAG GCAGCAGTGTGAGCGACTCGGACGAGCGGGGCAGCATGCAG < 41bp 0.896890276867576 0.689303353042266 NA NA prediction 0.415173847650619 Functional Loss - MXD1 ENSG00000059728 CDS Human protein_coding chr2:70165309 chr2:70165308 synonymous SNV . 0 20 hm7G_associated_SNPs_10704 0 0 1 0 2 MXD1 chr2:70165232 3'AG 70165232 Downstream 77bp 10091 chr13 113724384 113724384 1 + A G COAD 113724385 + 113724365 113724405 41 TTTCCCAGGCTCCTGGCCCAGCTGAACGAAACCGAGGCTGC TTTCCCAGGCTCCTGGCCCGGCTGAACGAAACCGAGGCTGC < 41bp 0.732991899796041 0.525438091067983 NA NA prediction 0.415107617456117 Functional Loss - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113724385 chr13:113724384 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_10709 0 0 1 0 1 MCF2L chr13:113724373 3'AG 113724373 Downstream 12bp 10092 chr7 150931207 150931207 1 + A G BLCA 150931208 + 150931188 150931228 41 GTTTCCTGGATCCAGGGGGAGGGAGAAGATCCCTGTGTCGA GTTTCCTGGATCCAGGGGGGGGGAGAAGATCCCTGTGTCGA < 41bp 0.725029827571422 0.517477566556385 NA NA prediction 0.415104522030075 Functional Loss - CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150931208 chr7:150931207 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10710 0 0 1 0 1 CHPF2 chr7:150931172 3'AG 150931172 Downstream 36bp 10093 chr14 21955791 21955791 1 + T C LIHC 21955792 + 21955772 21955812 41 CAGACATTGGACATGCCTGTGGGCATGACCCATGGCTTGAT CAGACATTGGACATGCCTGCGGGCATGACCCATGGCTTGAT < 41bp 0.731847347746136 0.524303083173771 NA NA prediction 0.41508852914473 Functional Loss - TOX4 ENSG00000092203 CDS Human protein_coding chr14:21955792 chr14:21955791 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10711 0 0 1 0 1 TOX4 chr14:21955852 5'GT 21955852 Upstream 62bp 10094 chr19 14020713 14020713 1 + T C STAD 14020714 + 14020694 14020734 41 ACGATGAAGAACTGGAGGCTGAGTTCTTGGCTTTGGTCGGG ACGATGAAGAACTGGAGGCCGAGTTCTTGGCTTTGGTCGGG < 41bp 0.707525416429319 0.493226029657627 NA NA prediction 0.415050832858638 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020714 chr19:14020713 synonymous SNV . 0 20 hm7G_associated_SNPs_10712 0 0 1 0 2 CC2D1A chr19:14020636 3'AG 14020636 Downstream 78bp 10095 chr19 14020713 14020713 1 + T C STAD 14020714 + 14020694 14020734 41 ACGATGAAGAACTGGAGGCTGAGTTCTTGGCTTTGGTCGGG ACGATGAAGAACTGGAGGCCGAGTTCTTGGCTTTGGTCGGG < 41bp 0.707525416429319 0.493226029657627 NA NA prediction 0.415050832858638 Functional Loss - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020714 chr19:14020713 synonymous SNV . 0 20 hm7G_associated_SNPs_10712 0 0 1 0 2 CC2D1A chr19:14020771 5'GT 14020771 Upstream 59bp 10096 chr12 58006774 58006774 1 + T C rs145325473 58006775 + 58006755 58006795 41 CTGCTGCCTCCGGTCTGGCTGCCCCCTCTGGCCCCAGCTCT CTGCTGCCTCCGGTCTGGCCGCCCCCTCTGGCCCCAGCTCT < 41bp 0.719693119384348 0.512186824842894 NA NA prediction 0.415012589082908 Functional Loss - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58006775 chr12:58006774 synonymous SNV . 0 20 hm7G_associated_SNPs_10715 0 0 1 0 1 ARHGEF25 chr12:58006713 3'AG 58006713 Downstream 62bp 10097 chr15 80464562 80464562 1 + T C LUAD 80464563 + 80464543 80464583 41 AGGCCCATGAGCACATTTTTGGAATGGTCCTTATGAACGAC AGGCCCATGAGCACATTTTCGGAATGGTCCTTATGAACGAC < 41bp 0.748676248458981 0.54118846085301 NA NA prediction 0.414975575211942 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80464563 chr15:80464562 synonymous SNV . 0 20 hm7G_associated_SNPs_10716 0 0 0 0 2 FAH chr15:80464491 3'AG 80464491 Downstream 72bp 10098 chr15 80464562 80464562 1 + T C LUAD 80464563 + 80464543 80464583 41 AGGCCCATGAGCACATTTTTGGAATGGTCCTTATGAACGAC AGGCCCATGAGCACATTTTCGGAATGGTCCTTATGAACGAC < 41bp 0.748676248458981 0.54118846085301 NA NA prediction 0.414975575211942 Functional Loss - FAH ENSG00000103876 CDS Human protein_coding chr15:80464563 chr15:80464562 synonymous SNV . 0 20 hm7G_associated_SNPs_10716 0 0 0 0 2 FAH chr15:80464590 5'GT 80464590 Upstream 29bp 10099 chr9 71668065 71668065 1 + T C SKCM 71668066 + 71668046 71668086 41 TCCTCTGCAGCTCTCTAGATGAGACCACCTATGAAAGACTA TCCTCTGCAGCTCTCTAGACGAGACCACCTATGAAAGACTA < 41bp 0.716662183806131 0.509176220025379 NA NA prediction 0.414971927561504 Functional Loss - FXN ENSG00000165060 CDS Human protein_coding chr9:71668066 chr9:71668065 synonymous SNV . 0 20 hm7G_associated_SNPs_10717 0 0 1 0 1 FXN chr9:71668056 3'AG 71668056 Downstream 10bp 10100 chr12 53670429 53670429 1 + T C LIHC 53670430 + 53670410 53670450 41 GCGAGACAGCCTCAGTGGCTGGGACCCGGAGACCCTGGCCC GCGAGACAGCCTCAGTGGCCGGGACCCGGAGACCCTGGCCC < 41bp 0.734455628078745 0.526978911364122 NA NA prediction 0.414953433429246 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53670430 chr12:53670429 nonsynonymous SNV 0.940 1 20 hm7G_associated_SNPs_10718 0 0 1 0 1 ESPL1 chr12:53670404 3'AG 53670404 Downstream 26bp 10101 chr16 24922664 24922664 1 + A G OV 24922665 + 24922645 24922685 41 CTAGGTGACATGACCCCAAAGCAGTCCAAAGTGGTGAAGGC CTAGGTGACATGACCCCAAGGCAGTCCAAAGTGGTGAAGGC < 41bp 0.736816120534417 0.529340233970754 NA NA prediction 0.414951773127325 Functional Loss - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24922665 chr16:24922664 nonsynonymous SNV 0.401 0 20 hm7G_associated_SNPs_10719 0 0 0 0 1 SLC5A11 chr16:24922649 3'AG 24922649 Downstream 16bp 10102 chr12 102074234 102074234 1 + T G OV 102074235 + 102074215 102074255 41 GCAAGCCCAGCCCCTATGATGGAGGCACTTACTGCTGCAAA GCAAGCCCAGCCCCTATGAGGGAGGCACTTACTGCTGCAAA < 41bp 0.707472618227514 0.378706664490307 NA NA prediction 0.414945236455027 Functional Loss - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102074235 chr12:102074234 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_10720 0 0 0 0 1 MYBPC1 chr12:102074307 5'GT 102074307 Upstream 74bp 10103 chr12 32480480 32480480 1 + A G GBM 32480481 + 32480461 32480501 41 AAGGGGGCACTGACGGAGCAGCATGAGCGGGTGCACCGGCT AAGGGGGCACTGACGGAGCGGCATGAGCGGGTGCACCGGCT < 41bp 0.725270441244301 0.517804489817997 NA NA prediction 0.414931902852608 Functional Loss - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32480481 chr12:32480480 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_10721 0 0 0 0 1 BICD1 chr12:32480395 3'AG 32480395 Downstream 86bp 10104 chr14 73727492 73727492 1 + T C UCEC 73727493 + 73727473 73727513 41 GCACAAAGTCGTATGGTGGTGACAGCACCGGGGGCATGCCC GCACAAAGTCGTATGGTGGCGACAGCACCGGGGGCATGCCC < 41bp 0.707465272180657 0.490362773411397 NA NA prediction 0.414930544361313 Functional Loss - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73727493 chr14:73727492 synonymous SNV . 0 20 hm7G_associated_SNPs_10722 0 0 1 0 1 PAPLN chr14:73727537 5'GT 73727537 Upstream 46bp 10105 chr19 45324000 45324000 1 + A G UCEC 45324001 + 45323981 45324021 41 CTGAGCCACTCGGGGTCGGAGCAACCAGAGCAGACCGGCCT CTGAGCCACTCGGGGTCGGGGCAACCAGAGCAGACCGGCCT < 41bp 0.733391518828137 0.525929019051587 NA NA prediction 0.4149249995531 Functional Loss - BCAM ENSG00000187244 CDS Human protein_coding chr19:45324001 chr19:45324000 nonsynonymous SNV 0.921 1 20 hm7G_associated_SNPs_10723 0 0 1 0 2 BCAM chr19:45323962 3'AG 45323962 Downstream 39bp 10106 chr19 45324000 45324000 1 + A G UCEC 45324001 + 45323981 45324021 41 CTGAGCCACTCGGGGTCGGAGCAACCAGAGCAGACCGGCCT CTGAGCCACTCGGGGTCGGGGCAACCAGAGCAGACCGGCCT < 41bp 0.733391518828137 0.525929019051587 NA NA prediction 0.4149249995531 Functional Loss - BCAM ENSG00000187244 CDS Human protein_coding chr19:45324001 chr19:45324000 nonsynonymous SNV 0.921 1 20 hm7G_associated_SNPs_10723 0 0 1 0 2 BCAM chr19:45324079 5'GT 45324079 Upstream 80bp 10107 chr3 100365530 100365530 1 + T C LGG 100365531 + 100365511 100365551 41 CACTGATGGATTCCTGCGCTGCCGCTGCAACCATACTACTA CACTGATGGATTCCTGCGCCGCCGCTGCAACCATACTACTA < 41bp 0.707453489756137 0.498050916515235 NA NA prediction 0.414906979512274 Functional Loss - ADGRG7 ENSG00000144820 CDS Human protein_coding chr3:100365531 chr3:100365530 nonsynonymous SNV 0.202 5 20 hm7G_associated_SNPs_10725 0 0 0 0 1 ADGRG7 chr3:100365568 5'GT 100365568 Upstream 39bp 10108 chr2 47277163 47277163 1 + T C LIHC 47277164 + 47277144 47277184 41 GCATGCACCTGACTTTGCCTGATGCCCATGATGCAGACTCT GCATGCACCTGACTTTGCCCGATGCCCATGATGCAGACTCT < 41bp 0.726572233439463 0.5191218849657 NA NA prediction 0.414900696947526 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47277164 chr2:47277163 synonymous SNV . 0 20 hm7G_associated_SNPs_10726 0 0 1 0 1 TTC7A chr2:47277088 3'AG 47277088 Downstream 76bp 10109 chr3 10311828 10311828 1 + A G SKCM 10311829 + 10311809 10311849 41 CTGCAGCATAAAGATAGGGAGGTGGTGATGGAGCACCCCTC CTGCAGCATAAAGATAGGGGGGTGGTGATGGAGCACCCCTC < 41bp 0.7226358195919 0.515195816263962 NA NA prediction 0.414880006655875 Functional Loss - TATDN2 ENSG00000157014;ENSG00000272410 CDS Human other chr3:10311829 chr3:10311828 nonsynonymous SNV 0.955 0 20 hm7G_associated_SNPs_10727 0 0 1 0 1 TATDN2 chr3:10311815 3'AG 10311815 Downstream 14bp 10110 chr15 41576228 41576228 1 + A G rs548200821 41576229 + 41576209 41576249 41 CTGCGAAGATGGCGGAGTAAGGCGTGCCGCTGCAAACTGGC CTGCGAAGATGGCGGAGTAGGGCGTGCCGCTGCAAACTGGC < 41bp 0.74189595724168 0.534474549697253 NA NA prediction 0.414842815088852 Functional Loss - OIP5-AS1 ENSG00000247556 ncRNA_exonic Human processed_transcript chr15:41576229 chr15:41576228 . . 0 20 hm7G_associated_SNPs_10729 0 0 1 0 1 OIP5-AS1 chr15:41576308 5'GT 41576308 Upstream 81bp 10111 chr6 133834061 133834061 1 + T C SKCM 133834062 + 133834042 133834082 41 TCCATGCAGCTGCAAGTAGTGCAAACCTTTGTTTGCCAACA TCCATGCAGCTGCAAGTAGCGCAAACCTTTGTTTGCCAACA < 41bp 0.707763873006509 0.500343391829662 NA NA prediction 0.414840962353693 Functional Loss - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133834062 chr6:133834061 synonymous SNV . 0 20 hm7G_associated_SNPs_10730 0 0 1 0 1 EYA4 chr6:133834016 3'AG 133834016 Downstream 46bp 10112 chr6 80715647 80715647 1 + T G COAD 80715648 + 80715628 80715668 41 TTAAAAATAAGTTTAAAAATGAAGACCTTACTGATGAACTA TTAAAAATAAGTTTAAAAAGGAAGACCTTACTGATGAACTA < 41bp 0.882219138504103 0.674802288263711 NA NA prediction 0.414833700480785 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80715648 chr6:80715647 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10733 0 0 1 0 2 TTK chr6:80715559 3'AG 80715559 Downstream 89bp 10113 chr6 80715647 80715647 1 + T G COAD 80715648 + 80715628 80715668 41 TTAAAAATAAGTTTAAAAATGAAGACCTTACTGATGAACTA TTAAAAATAAGTTTAAAAAGGAAGACCTTACTGATGAACTA < 41bp 0.882219138504103 0.674802288263711 NA NA prediction 0.414833700480785 Functional Loss - TTK ENSG00000112742 CDS Human protein_coding chr6:80715648 chr6:80715647 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10733 0 0 1 0 2 TTK chr6:80715699 5'GT 80715699 Upstream 53bp 10114 chr19 18497181 18497181 1 + A G LIHC 18497182 + 18497162 18497202 41 GAGTTGCGGAAACGCTACGAGGACCTGCTAACCAGGCTGCG GAGTTGCGGAAACGCTACGGGGACCTGCTAACCAGGCTGCG < 41bp 0.767001101630224 0.559584845059261 NA NA prediction 0.414832513141925 Functional Loss - GDF15 ENSG00000130513 CDS Human protein_coding chr19:18497182 chr19:18497181 nonsynonymous SNV 0.093 3 20 hm7G_associated_SNPs_10734 0 0 1 0 1 GDF15 chr19:18497276 5'GT 18497276 Upstream 96bp 10115 chr1 12164451 12164451 1 + A G rs72861979 12164452 + 12164432 12164472 41 TTAGACGACCTCGTGGAGAAGACGCCGTGTGCATGGAACTC TTAGACGACCTCGTGGAGAGGACGCCGTGTGCATGGAACTC < 41bp 0.716861827344855 0.509452201450756 NA NA prediction 0.414819251788198 Functional Loss - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12164452 chr1:12164451 nonsynonymous SNV 0.743 4 20 hm7G_associated_SNPs_10737 0 0 1 0 1 TNFRSF8 chr1:12164436 3'AG 12164436 Downstream 16bp 10116 chr19 38692595 38692595 1 + T C UCEC 38692596 + 38692576 38692616 41 GTCCACAGCCACCTGAGCCTGGAGAGGGGACCCCCGACCCC GTCCACAGCCACCTGAGCCCGGAGAGGGGACCCCCGACCCC < 41bp 0.710952446240462 0.503547152250008 NA NA prediction 0.414810587980907 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38692596 chr19:38692595 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_10738 0 0 1 0 2 SIPA1L3 chr19:38692502 3'AG 38692502 Downstream 94bp 10117 chr19 38692595 38692595 1 + T C UCEC 38692596 + 38692576 38692616 41 GTCCACAGCCACCTGAGCCTGGAGAGGGGACCCCCGACCCC GTCCACAGCCACCTGAGCCCGGAGAGGGGACCCCCGACCCC < 41bp 0.710952446240462 0.503547152250008 NA NA prediction 0.414810587980907 Functional Loss - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38692596 chr19:38692595 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_10738 0 0 1 0 2 SIPA1L3 chr19:38692637 5'GT 38692637 Upstream 43bp 10118 chr11 11927068 11927068 1 + T C LIHC 11927069 + 11927049 11927089 41 CATTGGTCATCCGACCTTATGGGTCCAGCCAAGCATTTGCT CATTGGTCATCCGACCTTACGGGTCCAGCCAAGCATTTGCT < 41bp 0.707395469102367 0.493751480559765 NA NA prediction 0.414790938204735 Functional Loss - USP47 ENSG00000170242 CDS Human protein_coding chr11:11927069 chr11:11927068 synonymous SNV . 0 20 hm7G_associated_SNPs_10739 0 0 1 0 1 USP47 chr11:11927095 5'GT 11927095 Upstream 28bp 10119 chr1 226016459 226016459 1 + T G COAD 226016460 + 226016440 226016480 41 GAAATCCTCCTCACTTCAGTGCTGGGCTTTGCCATCTACTG GAAATCCTCCTCACTTCAGGGCTGGGCTTTGCCATCTACTG < 41bp 0.70739493097666 0.355432034635607 NA NA prediction 0.41478986195332 Functional Loss - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226016460 chr1:226016459 nonsynonymous SNV 0.784 0 20 hm7G_associated_SNPs_10740 0 0 1 0 1 EPHX1 chr1:226016426 3'AG 226016426 Downstream 34bp 10120 chr1 12835749 12835749 1 + T C LUAD 12835750 + 12835730 12835770 41 ACTTCTGGGGCATATGGTCTGGAGCTTCTGCACTCTCCCCA ACTTCTGGGGCATATGGTCCGGAGCTTCTGCACTCTCCCCA < 41bp 0.707386081081995 0.499637139469568 NA NA prediction 0.414772162163991 Functional Loss - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12835750 chr1:12835749 synonymous SNV . 0 20 hm7G_associated_SNPs_10741 0 0 0 0 1 PRAMEF12 chr1:12835686 3'AG 12835686 Downstream 64bp 10121 chr1 44436769 44436769 1 + T C UCEC 44436770 + 44436750 44436790 41 CGTCAACGTTCTGTGGCCTTGGAGCTCTGTGTCAAGGCCTT CGTCAACGTTCTGTGGCCTCGGAGCTCTGTGTCAAGGCCTT < 41bp 0.719070388794134 0.511691775280521 NA NA prediction 0.414757227027228 Functional Loss - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44436770 chr1:44436769 nonsynonymous SNV 0.778 2 20 hm7G_associated_SNPs_10742 0 0 1 0 1 DPH2 chr1:44436861 5'GT 44436861 Upstream 93bp 10122 chr8 36698064 36698064 1 + T C LUSC 36698065 + 36698045 36698085 41 AACGTCTCTCTGATGACTTTGCTGGAATGAGCTTTCCTGAA AACGTCTCTCTGATGACTTCGCTGGAATGAGCTTTCCTGAA < 41bp 0.712017654027283 0.504644139729509 NA NA prediction 0.414747028595548 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36698065 chr8:36698064 synonymous SNV . 0 20 hm7G_associated_SNPs_10743 0 0 0 0 2 KCNU1 chr8:36697981 3'AG 36697981 Downstream 84bp 10123 chr8 36698064 36698064 1 + T C LUSC 36698065 + 36698045 36698085 41 AACGTCTCTCTGATGACTTTGCTGGAATGAGCTTTCCTGAA AACGTCTCTCTGATGACTTCGCTGGAATGAGCTTTCCTGAA < 41bp 0.712017654027283 0.504644139729509 NA NA prediction 0.414747028595548 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36698065 chr8:36698064 synonymous SNV . 0 20 hm7G_associated_SNPs_10743 0 0 0 0 2 KCNU1 chr8:36698093 5'GT 36698093 Upstream 30bp 10124 chr4 47517533 47517533 1 + T C LIHC 47517534 + 47517514 47517554 41 GTTCCTAGTTGTCCTGAACTGGGTACCTTTGGTAGAAGCCT GTTCCTAGTTGTCCTGAACCGGGTACCTTTGGTAGAAGCCT < 41bp 0.707368072139556 0.495421649808824 NA NA prediction 0.414736144279112 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47517534 chr4:47517533 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10744 0 0 0 0 1 ATP10D chr4:47517493 3'AG 47517493 Downstream 41bp 10125 chr1 17295692 17295692 1 + A G LUAD 17295693 + 17295673 17295713 41 CCTGGCTAAGGTGGAGGAAAGCGAGGGGGCCCTGCGGGACA CCTGGCTAAGGTGGAGGAAGGCGAGGGGGCCCTGCGGGACA < 41bp 0.731604302984543 0.52424629432275 NA NA prediction 0.414716017323586 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17295693 chr1:17295692 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_10745 0 0 0 0 1 CROCC chr1:17295611 3'AG 17295611 Downstream 82bp 10126 chr1 156128566 156128566 1 + A G COAD 156128567 + 156128547 156128587 41 ACAAGGTCATGGAGGGAAAAGGCCAAAGCCCCTTTGACCCC ACAAGGTCATGGAGGGAAAGGGCCAAAGCCCCTTTGACCCC < 41bp 0.740162255868399 0.53282788190931 NA NA prediction 0.414668747918178 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156128567 chr1:156128566 synonymous SNV . 0 20 hm7G_associated_SNPs_10749 0 0 0 0 2 SEMA4A chr1:156128510 3'AG 156128510 Downstream 57bp 10127 chr1 156128566 156128566 1 + A G COAD 156128567 + 156128547 156128587 41 ACAAGGTCATGGAGGGAAAAGGCCAAAGCCCCTTTGACCCC ACAAGGTCATGGAGGGAAAGGGCCAAAGCCCCTTTGACCCC < 41bp 0.740162255868399 0.53282788190931 NA NA prediction 0.414668747918178 Functional Loss - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156128567 chr1:156128566 synonymous SNV . 0 20 hm7G_associated_SNPs_10749 0 0 0 0 2 SEMA4A chr1:156128615 5'GT 156128615 Upstream 50bp 10128 chr7 106524649 106524649 1 + T C PRAD 106524650 + 106524630 106524670 41 TCCTGTGCAGGCTACTGTGTGGCAACCTTTGTTCTTGGAAT TCCTGTGCAGGCTACTGTGCGGCAACCTTTGTTCTTGGAAT < 41bp 0.714288429925707 0.506960187639332 NA NA prediction 0.414656484572751 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106524650 chr7:106524649 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10750 0 0 0 0 2 PIK3CG chr7:106524600 3'AG 106524600 Downstream 50bp 10129 chr7 106524649 106524649 1 + T C PRAD 106524650 + 106524630 106524670 41 TCCTGTGCAGGCTACTGTGTGGCAACCTTTGTTCTTGGAAT TCCTGTGCAGGCTACTGTGCGGCAACCTTTGTTCTTGGAAT < 41bp 0.714288429925707 0.506960187639332 NA NA prediction 0.414656484572751 Functional Loss - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106524650 chr7:106524649 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10750 0 0 0 0 2 PIK3CG chr7:106524711 5'GT 106524711 Upstream 63bp 10130 chrX 70349952 70349952 1 + T C BLCA 70349953 + 70349933 70349973 41 GACCTGCAAGACCCAGTGTTGAGTAGTGCCCAGGCGCAGCG GACCTGCAAGACCCAGTGTCGAGTAGTGCCCAGGCGCAGCG < 41bp 0.743025042493024 0.535702170250609 NA NA prediction 0.41464574448483 Functional Loss - MED12 ENSG00000184634 CDS Human protein_coding chrX:70349953 chrX:70349952 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10751 0 0 0 0 1 MED12 chrX:70349885 3'AG 70349885 Downstream 68bp 10131 chr1 64036697 64036697 1 + T G rs74568205 64036698 + 64036678 64036718 41 TCTTTTTTTAATAGTCAGATGAGAAAGTGATTATTCACATC TCTTTTTTTAATAGTCAGAGGAGAAAGTGATTATTCACATC < 41bp 0.880332877865961 0.673018719480192 NA NA prediction 0.414628316771537 Functional Loss - EFCAB7 ENSG00000203965 CDS Human protein_coding chr1:64036698 chr1:64036697 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10754 0 0 0 0 1 EFCAB7 chr1:64036692 3'AG 64036692 Downstream 6bp 10132 chr6 17426846 17426846 1 + T C rs59744718 17426847 + 17426827 17426867 41 CACCCTCCGTGGAAGCCTTTGACAAGCTGATGGACAGTATG CACCCTCCGTGGAAGCCTTCGACAAGCTGATGGACAGTATG < 41bp 0.721638601884771 0.514332414463165 NA NA prediction 0.414612374843211 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17426847 chr6:17426846 synonymous SNV . 0 20 hm7G_associated_SNPs_10755 0 0 1 0 2 CAP2 chr6:17426821 3'AG 17426821 Downstream 26bp 10133 chr6 17426846 17426846 1 + T C rs59744718 17426847 + 17426827 17426867 41 CACCCTCCGTGGAAGCCTTTGACAAGCTGATGGACAGTATG CACCCTCCGTGGAAGCCTTCGACAAGCTGATGGACAGTATG < 41bp 0.721638601884771 0.514332414463165 NA NA prediction 0.414612374843211 Functional Loss - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17426847 chr6:17426846 synonymous SNV . 0 20 hm7G_associated_SNPs_10755 0 0 1 0 2 CAP2 chr6:17426921 5'GT 17426921 Upstream 76bp 10134 chr8 17849178 17849178 1 + T C COAD 17849179 + 17849159 17849199 41 TTGAGGATGGAGATGGTGCTGGTGCAGGTACTACAGTTAAT TTGAGGATGGAGATGGTGCCGGTGCAGGTACTACAGTTAAT < 41bp 0.715522239140876 0.508217402632459 NA NA prediction 0.414609673016833 Functional Loss - PCM1 ENSG00000078674 CDS Human protein_coding chr8:17849179 chr8:17849178 synonymous SNV . 0 20 hm7G_associated_SNPs_10756 0 0 1 0 2 PCM1 chr8:17849185 5'GT 17849185 Upstream 8bp 10135 chr8 17849178 17849178 1 + T C COAD 17849179 + 17849159 17849199 41 TTGAGGATGGAGATGGTGCTGGTGCAGGTACTACAGTTAAT TTGAGGATGGAGATGGTGCCGGTGCAGGTACTACAGTTAAT < 41bp 0.715522239140876 0.508217402632459 NA NA prediction 0.414609673016833 Functional Loss - PCM1 ENSG00000078674 CDS Human protein_coding chr8:17849179 chr8:17849178 synonymous SNV . 0 20 hm7G_associated_SNPs_10756 0 0 1 0 2 PCM1 chr8:17849209 5'GT 17849209 Upstream 32bp 10136 chr9 119094680 119094680 1 + T C COAD 119094681 + 119094661 119094701 41 TGACGGATGGGACATATTATGGGGACCAAAAGCAGGAGACC TGACGGATGGGACATATTACGGGGACCAAAAGCAGGAGACC < 41bp 0.722484655870733 0.515188292881879 NA NA prediction 0.414592725977708 Functional Loss - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119094681 chr9:119094680 synonymous SNV . 0 20 hm7G_associated_SNPs_10757 0 0 0 0 2 PAPPA chr9:119094612 3'AG 119094612 Downstream 69bp 10137 chr9 119094680 119094680 1 + T C COAD 119094681 + 119094661 119094701 41 TGACGGATGGGACATATTATGGGGACCAAAAGCAGGAGACC TGACGGATGGGACATATTACGGGGACCAAAAGCAGGAGACC < 41bp 0.722484655870733 0.515188292881879 NA NA prediction 0.414592725977708 Functional Loss - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119094681 chr9:119094680 synonymous SNV . 0 20 hm7G_associated_SNPs_10757 0 0 0 0 2 PAPPA chr9:119094747 5'GT 119094747 Upstream 68bp 10138 chr3 52837945 52837945 1 + T C UCEC 52837946 + 52837926 52837966 41 TCCCTCAAGTATCACTTTGTGACTCCACTGACCTCAATGGT TCCCTCAAGTATCACTTTGCGACTCCACTGACCTCAATGGT < 41bp 0.707287910116543 0.492983304328358 NA NA prediction 0.414575820233086 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52837946 chr3:52837945 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10760 0 0 1 0 2 ITIH3 chr3:52837871 3'AG 52837871 Downstream 75bp 10139 chr3 52837945 52837945 1 + T C UCEC 52837946 + 52837926 52837966 41 TCCCTCAAGTATCACTTTGTGACTCCACTGACCTCAATGGT TCCCTCAAGTATCACTTTGCGACTCCACTGACCTCAATGGT < 41bp 0.707287910116543 0.492983304328358 NA NA prediction 0.414575820233086 Functional Loss - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52837946 chr3:52837945 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10760 0 0 1 0 2 ITIH3 chr3:52838025 5'GT 52838025 Upstream 81bp 10140 chr17 10633181 10633181 1 - A C rs3826448 10633180 - 10633160 10633200 41 GACTCACCGCCCCGCGCCGTGTTCTCCGAGCCATGGCGCCA GACTCACCGCCCCGCGCCGGGTTCTCCGAGCCATGGCGCCA < 41bp 0.731343252215057 0.524071974217943 NA NA prediction 0.414542555994228 Functional Loss - TMEM220-AS1 ENSG00000263400 ncRNA_exonic Human protein_coding chr17:10633180 chr17:10633181 . . 0 20 hm7G_associated_SNPs_10761 0 0 0 0 1 TMEM220 chr17:10633097 5'GT 10633097 Upstream 85bp 10141 chr1 898830 898830 1 + T C rs140681689 898831 + 898811 898851 41 TGCCTGGGTGTGGCCGCCTTGCATGGACTCCTGTACTCGGC TGCCTGGGTGTGGCCGCCTCGCATGGACTCCTGTACTCGGC < 41bp 0.719273117658588 0.512016819923833 NA NA prediction 0.41451259546951 Functional Loss - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898831 chr1:898830 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_10762 0 0 1 0 1 KLHL17 chr1:898884 5'GT 898884 Upstream 55bp 10142 chr1 44083507 44083507 1 + T C rs641365 44083508 + 44083488 44083528 41 CCCTGCCCGAGACCATGGGTGATTTCTGGAGGATGGTGTGG CCCTGCCCGAGACCATGGGCGATTTCTGGAGGATGGTGTGG < 41bp 0.708036276204234 0.500780459996688 NA NA prediction 0.414511632415093 Functional Loss - PTPRF ENSG00000142949 CDS Human protein_coding chr1:44083508 chr1:44083507 synonymous SNV . 0 20 hm7G_associated_SNPs_10763 0 0 1 0 1 PTPRF chr1:44083582 5'GT 44083582 Upstream 76bp 10143 chr15 71276472 71276472 1 + T C PAAD 71276473 + 71276453 71276493 41 TAACAACGTAGCTCGACAGTGGGACTTGCAACAACAACGAG TAACAACGTAGCTCGACAGCGGGACTTGCAACAACAACGAG < 41bp 0.707252276942637 0.495894693408099 NA NA prediction 0.414504553885274 Functional Loss - LRRC49 ENSG00000137821 CDS Human protein_coding chr15:71276473 chr15:71276472 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10765 0 0 0 0 1 LRRC49 chr15:71276433 3'AG 71276433 Downstream 40bp 10144 chr16 28883185 28883185 1 + T C rs200463987 28883186 + 28883166 28883206 41 GCCTCCCATTTTGACTCGATGGAACTGCTTCCCCCAGAGTT GCCTCCCATTTTGACTCGACGGAACTGCTTCCCCCAGAGTT < 41bp 0.72513328592997 0.517892468166548 NA NA prediction 0.414481635526843 Functional Loss - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28883186 chr16:28883185 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10766 0 0 1 0 1 SH2B1 chr16:28883101 3'AG 28883101 Downstream 85bp 10145 chr15 68061960 68061960 1 + T C UCS 68061961 + 68061941 68061981 41 ATTCGCCCGTCCTTCCAGTTGGAGAGTTCTCGGAGCCATTT ATTCGCCCGTCCTTCCAGTCGGAGAGTTCTCGGAGCCATTT < 41bp 0.726338528118982 0.519102429951331 NA NA prediction 0.414472196335304 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:68061961 chr15:68061960 synonymous SNV . 0 20 hm7G_associated_SNPs_10767 0 0 0 0 2 MAP2K5 chr15:68061940 3'AG 68061940 Downstream 21bp 10146 chr15 68061960 68061960 1 + T C UCS 68061961 + 68061941 68061981 41 ATTCGCCCGTCCTTCCAGTTGGAGAGTTCTCGGAGCCATTT ATTCGCCCGTCCTTCCAGTCGGAGAGTTCTCGGAGCCATTT < 41bp 0.726338528118982 0.519102429951331 NA NA prediction 0.414472196335304 Functional Loss - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:68061961 chr15:68061960 synonymous SNV . 0 20 hm7G_associated_SNPs_10767 0 0 0 0 2 MAP2K5 chr15:68062001 5'GT 68062001 Upstream 42bp 10147 chr1 26882078 26882078 1 + T C COAD 26882079 + 26882059 26882099 41 ACTGAAGCCCAGAGCCTCTTGCGGGCCCTGTTCAAGCGGAA ACTGAAGCCCAGAGCCTCTCGCGGGCCCTGTTCAAGCGGAA < 41bp 0.750519093622248 0.543283074398834 NA NA prediction 0.414472038446827 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26882079 chr1:26882078 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10768 0 0 1 0 2 RPS6KA1 chr1:26882028 3'AG 26882028 Downstream 51bp 10148 chr1 26882078 26882078 1 + T C COAD 26882079 + 26882059 26882099 41 ACTGAAGCCCAGAGCCTCTTGCGGGCCCTGTTCAAGCGGAA ACTGAAGCCCAGAGCCTCTCGCGGGCCCTGTTCAAGCGGAA < 41bp 0.750519093622248 0.543283074398834 NA NA prediction 0.414472038446827 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26882079 chr1:26882078 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10768 0 0 1 0 2 RPS6KA1 chr1:26882116 5'GT 26882116 Upstream 39bp 10149 chr8 70536371 70536371 1 + A G rs61747130 70536372 + 70536352 70536392 41 CAGTGGTGGCAACAGGGGCAGGATGCTGGCAGATAGCAGCA CAGTGGTGGCAACAGGGGCGGGATGCTGGCAGATAGCAGCA < 41bp 0.708494393105693 0.501258491487394 NA NA prediction 0.414471803236598 Functional Loss - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70536372 chr8:70536371 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_10769 0 0 0 0 1 SULF1 chr8:70536432 5'GT 70536432 Upstream 62bp 10150 chr7 100187902 100187902 1 - A G STAD 100187901 - 100187881 100187921 41 GGACTGAGTCTGCGACAGATGCGTCTCCACACGCCTTCCCC GGACTGAGTCTGCGACAGACGCGTCTCCACACGCCTTCCCC < 41bp 0.720739938642826 0.513504310596965 NA NA prediction 0.414471256091721 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187901 chr7:100187902 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10770 0 0 0 0 2 FBXO24 chr7:100187853 5'GT 100187853 Upstream 50bp 10151 chr7 100187902 100187902 1 - A G STAD 100187901 - 100187881 100187921 41 GGACTGAGTCTGCGACAGATGCGTCTCCACACGCCTTCCCC GGACTGAGTCTGCGACAGACGCGTCTCCACACGCCTTCCCC < 41bp 0.720739938642826 0.513504310596965 NA NA prediction 0.414471256091721 Functional Loss - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187901 chr7:100187902 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10770 0 0 0 0 2 FBXO24 chr7:100187954 3'AG 100187954 Downstream 53bp 10152 chr7 107314636 107314636 1 + T G LUSC 107314637 + 107314617 107314657 41 CCAGTGGTGAGTTTAATGGTGGGATCTGTTGTTCTGAGCAT CCAGTGGTGAGTTTAATGGGGGGATCTGTTGTTCTGAGCAT < 41bp 0.707230019579798 0.376991513086771 NA NA prediction 0.414460039159596 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107314637 chr7:107314636 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10772 0 0 0 0 1 SLC26A4 chr7:107314609 3'AG 107314609 Downstream 28bp 10153 chr11 119045210 119045210 1 + A G rs138854645 119045211 + 119045191 119045231 41 TGCCATTGGCCGTATCCCCAGCAAGTACGTGGGCCGCTATG TGCCATTGGCCGTATCCCCGGCAAGTACGTGGGCCGCTATG < 41bp 0.707220309490691 0.480515568560006 NA NA prediction 0.414440618981383 Functional Loss - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119045211 chr11:119045210 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10773 0 0 1 0 1 NLRX1 chr11:119045162 3'AG 119045162 Downstream 49bp 10154 chr3 53217158 53217158 1 + A G LIHC 53217159 + 53217139 53217179 41 TGTAACGCTGCCATCCACAAGAAATGCATCGACAAGATCAT TGTAACGCTGCCATCCACAGGAAATGCATCGACAAGATCAT < 41bp 0.717509010475179 0.510312530188757 NA NA prediction 0.414392960572844 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53217159 chr3:53217158 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10776 0 0 1 0 2 PRKCD chr3:53217137 3'AG 53217137 Downstream 22bp 10155 chr3 53217158 53217158 1 + A G LIHC 53217159 + 53217139 53217179 41 TGTAACGCTGCCATCCACAAGAAATGCATCGACAAGATCAT TGTAACGCTGCCATCCACAGGAAATGCATCGACAAGATCAT < 41bp 0.717509010475179 0.510312530188757 NA NA prediction 0.414392960572844 Functional Loss - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53217159 chr3:53217158 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10776 0 0 1 0 2 PRKCD chr3:53217222 5'GT 53217222 Upstream 65bp 10156 chr17 34958533 34958533 1 + A G rs145987678 34958534 + 34958514 34958554 41 CCGAGGCGCGGGACATTCCAGTTCTGCGGCCCAGACGGCAG CCGAGGCGCGGGACATTCCGGTTCTGCGGCCCAGACGGCAG < 41bp 0.768245342992085 0.561066999451304 NA NA prediction 0.414356687081562 Functional Loss - MRM1 ENSG00000129282 CDS Human other chr17:34958534 chr17:34958533 synonymous SNV . 0 20 hm7G_associated_SNPs_10778 0 0 0 0 1 MRM1 chr17:34958605 5'GT 34958605 Upstream 73bp 10157 chr5 138147873 138147873 1 + T C COAD 138147874 + 138147854 138147894 41 GTCTTTCTTATTTTATAGGTGGAAGATGGTATCTTGAAGTT GTCTTTCTTATTTTATAGGCGGAAGATGGTATCTTGAAGTT < 41bp 0.708422967549416 0.501254122556236 NA NA prediction 0.41433768998636 Functional Loss - CTNNA1 ENSG00000044115 CDS Human protein_coding chr5:138147874 chr5:138147873 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_10779 0 0 1 0 1 CTNNA1 chr5:138147872 3'AG 138147872 Downstream 2bp 10158 chr17 48047114 48047114 1 + A G rs138634383 48047115 + 48047095 48047135 41 ACCCTCAGGAACTCGAGGCAGGTAAGTTCGGCCGTGGAGGC ACCCTCAGGAACTCGAGGCGGGTAAGTTCGGCCGTGGAGGC < 41bp 0.707158077052245 0.499031334693794 NA NA prediction 0.414316154104491 Functional Loss - DLX4 ENSG00000108813 CDS Human protein_coding chr17:48047115 chr17:48047114 synonymous SNV . 0 20 hm7G_associated_SNPs_10780 0 0 0 0 1 DLX4 chr17:48047115 5'GT 48047115 Upstream 2bp 10159 chr8 145166838 145166838 1 + A G UCEC 145166839 + 145166819 145166859 41 GTGGAGTGCCGGGACCCTCAGAGTGGAGAGAGAGACCCGGG GTGGAGTGCCGGGACCCTCGGAGTGGAGAGAGAGACCCGGG < 41bp 0.741399146847533 0.534253738430049 NA NA prediction 0.414290816834966 Functional Loss - WDR97 ENSG00000179698 CDS Human protein_coding chr8:145166839 chr8:145166838 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_10782 0 0 0 0 1 WDR97 chr8:145166790 3'AG 145166790 Downstream 49bp 10160 chr1 99764611 99764611 1 + T C KIRP 99764612 + 99764592 99764632 41 TGTTCATGTATTTGGATTATGCTCTACAGCTCTCATTACAG TGTTCATGTATTTGGATTACGCTCTACAGCTCTCATTACAG < 41bp 0.708003794438564 0.50085880772697 NA NA prediction 0.414289973423187 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99764612 chr1:99764611 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_10783 0 0 0 0 1 PLPPR4 chr1:99764591 3'AG 99764591 Downstream 21bp 10161 chr1 201981088 201981088 1 + A G HNSC 201981089 + 201981069 201981109 41 TGCCTGGCCCTTGCAGAGAAGGCCAGCTGGTTGGGGGAACA TGCCTGGCCCTTGCAGAGAGGGCCAGCTGGTTGGGGGAACA < 41bp 0.750965895382495 0.54382967235798 NA NA prediction 0.414272446049031 Functional Loss - ELF3 ENSG00000163435 CDS Human protein_coding chr1:201981089 chr1:201981088 nonsynonymous SNV 0.978 2 20 hm7G_associated_SNPs_10784 0 0 1 0 1 ELF3 chr1:201981085 3'AG 201981085 Downstream 4bp 10162 chr15 39876366 39876366 1 + T C HNSC 39876367 + 39876347 39876387 41 CGCACCATTGTGACCACGCTGCAGGACAGCATCCGCAAAGT CGCACCATTGTGACCACGCCGCAGGACAGCATCCGCAAAGT < 41bp 0.710222321573585 0.50309266414782 NA NA prediction 0.414259314851529 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39876367 chr15:39876366 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_10785 0 0 1 0 1 THBS1 chr15:39876388 5'GT 39876388 Upstream 23bp 10163 chr17 48616568 48616568 1 + T C SKCM 48616569 + 48616549 48616589 41 AGGTGAGGTCCTGGCAGGGTGATGGCTCCCCCATGGCCAAT AGGTGAGGTCCTGGCAGGGCGATGGCTCCCCCATGGCCAAT < 41bp 0.748961943312714 0.541835064986706 NA NA prediction 0.414253756652016 Functional Loss - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48616569 chr17:48616568 synonymous SNV . 0 20 hm7G_associated_SNPs_10786 0 0 0 0 1 EPN3 chr17:48616548 3'AG 48616548 Downstream 21bp 10164 chr10 12148361 12148361 1 + T C rs561946429 12148362 + 12148342 12148382 41 TTGGCGATTTCTTCAATGGTGCCCAGATCATCTTTGACACA TTGGCGATTTCTTCAATGGCGCCCAGATCATCTTTGACACA < 41bp 0.730349369379161 0.523229351447213 NA NA prediction 0.414240035863896 Functional Loss - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148362 chr10:12148361 synonymous SNV . 0 20 hm7G_associated_SNPs_10787 0 0 1 0 1 DHTKD1 chr10:12148395 5'GT 12148395 Upstream 35bp 10165 chr19 7673072 7673072 1 + A G UCEC 7673073 + 7673053 7673093 41 CTGCTTCCCGACGGTGACCAGCCTCCAGGACCTGGCCAGTG CTGCTTCCCGACGGTGACCGGCCTCCAGGACCTGGCCAGTG < 41bp 0.70711623941992 0.477880765016891 NA NA prediction 0.41423247883984 Functional Loss - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7673073 chr19:7673072 nonsynonymous SNV 0.398 0 20 hm7G_associated_SNPs_10788 0 0 0 0 1 CAMSAP3 chr19:7673012 3'AG 7673012 Downstream 61bp 10166 chr10 60556180 60556180 1 + T C LUSC 60556181 + 60556161 60556201 41 TCCTCGGACTTGAAAGCAGTGGGGTTACCATAGCAACCAGT TCCTCGGACTTGAAAGCAGCGGGGTTACCATAGCAACCAGT < 41bp 0.744104885419772 0.53699186295626 NA NA prediction 0.414226044927022 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60556181 chr10:60556180 synonymous SNV . 0 20 hm7G_associated_SNPs_10789 0 0 1 0 1 BICC1 chr10:60556100 3'AG 60556100 Downstream 81bp 10167 chr19 42791165 42791165 1 + T C CESC 42791166 + 42791146 42791186 41 CTGTGTCCCCAGAACCTGCTGAGTCGGCAGCTGTTGCTCAT CTGTGTCCCCAGAACCTGCCGAGTCGGCAGCTGTTGCTCAT < 41bp 0.73081742971089 0.523709083420671 NA NA prediction 0.414216692580438 Functional Loss - CIC ENSG00000079432 CDS Human protein_coding chr19:42791166 chr19:42791165 synonymous SNV . 0 20 hm7G_associated_SNPs_10790 0 0 1 0 1 CIC chr19:42791158 3'AG 42791158 Downstream 8bp 10168 chr2 74902890 74902890 1 + T C UCEC 74902891 + 74902871 74902911 41 TATAGAGCTGGCTCCTGGTTGGCTCCCGTACTGAGGTGACA TATAGAGCTGGCTCCTGGTCGGCTCCCGTACTGAGGTGACA < 41bp 0.707099613511335 0.491725588155877 NA NA prediction 0.414199227022671 Functional Loss - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74902891 chr2:74902890 synonymous SNV . 0 20 hm7G_associated_SNPs_10792 0 0 0 0 1 SEMA4F chr2:74902876 3'AG 74902876 Downstream 15bp 10169 chr12 56115258 56115258 1 + A G KIRP 56115259 + 56115239 56115279 41 CAGGCAGCCAAGTGGGTGGAGATGCACGTTAAGGAAGCAGG CAGGCAGCCAAGTGGGTGGGGATGCACGTTAAGGAAGCAGG < 41bp 0.715309219254931 0.508210196650947 NA NA prediction 0.41419804520797 Functional Loss - RDH5 ENSG00000135437 CDS Human protein_coding chr12:56115259 chr12:56115258 nonsynonymous SNV 0.674 2 20 hm7G_associated_SNPs_10793 0 0 0 0 1 RDH5 chr12:56115278 5'GT 56115278 Upstream 21bp 10170 chr11 490484 490484 1 + A G rs117857885 490485 + 490465 490505 41 GAACAAGGATGACCAGGGCAGCACCGTCGGCAACGGGGACC GAACAAGGATGACCAGGGCGGCACCGTCGGCAACGGGGACC < 41bp 0.740227210953463 0.533128789384512 NA NA prediction 0.414196843137902 Functional Loss - PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:490485 chr11:490484 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_10794 0 0 1 0 1 PTDSS2 chr11:490420 3'AG 490420 Downstream 65bp 10171 chr3 50324159 50324159 1 + T C STAD 50324160 + 50324140 50324180 41 CGACCGTGGGATGAGCTGCTGGGCGTTTTGCCGCCGTCACT CGACCGTGGGATGAGCTGCCGGGCGTTTTGCCGCCGTCACT < 41bp 0.707086018581211 0.492477500359785 NA NA prediction 0.414172037162421 Functional Loss - LSMEM2 ENSG00000179564 CDS Human protein_coding chr3:50324160 chr3:50324159 nonsynonymous SNV 0.024 3 20 hm7G_associated_SNPs_10795 0 0 0 0 1 LSMEM2 chr3:50324105 3'AG 50324105 Downstream 55bp 10172 chr7 142991371 142991371 1 + A G STAD 142991372 + 142991352 142991392 41 GATGGTCCTGTCTGCCTTCAGGTGAAGCCTTGCACTCCTGA GATGGTCCTGTCTGCCTTCGGGTGAAGCCTTGCACTCCTGA < 41bp 0.737780394187773 0.530698285716531 NA NA prediction 0.414164216942486 Functional Loss - CASP2;CASP2 ENSG00000106144;ENSG00000106144 exonic;splicing Human protein_coding chr7:142991372 chr7:142991371 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_10796 0 0 1 0 2 CASP2 chr7:142991323 3'AG 142991323 Downstream 49bp 10173 chr7 142991371 142991371 1 + A G STAD 142991372 + 142991352 142991392 41 GATGGTCCTGTCTGCCTTCAGGTGAAGCCTTGCACTCCTGA GATGGTCCTGTCTGCCTTCGGGTGAAGCCTTGCACTCCTGA < 41bp 0.737780394187773 0.530698285716531 NA NA prediction 0.414164216942486 Functional Loss - CASP2;CASP2 ENSG00000106144;ENSG00000106144 exonic;splicing Human protein_coding chr7:142991372 chr7:142991371 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_10796 0 0 1 0 2 CASP2 chr7:142991417 5'GT 142991417 Upstream 47bp 10174 chr15 57744415 57744415 1 + A G rs56726484 57744416 + 57744396 57744436 41 CGAAGCCAACACAACGAAAAGGTGGAGGAGAACTCCACATT CGAAGCCAACACAACGAAAGGGTGGAGGAGAACTCCACATT < 41bp 0.729155396764519 0.522078655588997 NA NA prediction 0.414153482351045 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57744416 chr15:57744415 nonsynonymous SNV 0.169 0 20 hm7G_associated_SNPs_10797 0 0 1 0 2 CGNL1 chr15:57744339 3'AG 57744339 Downstream 77bp 10175 chr15 57744415 57744415 1 + A G rs56726484 57744416 + 57744396 57744436 41 CGAAGCCAACACAACGAAAAGGTGGAGGAGAACTCCACATT CGAAGCCAACACAACGAAAGGGTGGAGGAGAACTCCACATT < 41bp 0.729155396764519 0.522078655588997 NA NA prediction 0.414153482351045 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57744416 chr15:57744415 nonsynonymous SNV 0.169 0 20 hm7G_associated_SNPs_10797 0 0 1 0 2 CGNL1 chr15:57744487 5'GT 57744487 Upstream 73bp 10176 chr17 25944355 25944355 1 + A G THYM 25944356 + 25944336 25944376 41 TGCTGGGCTTTCGACCTGCAGGAGAGACCCAGCTTCAGCCT TGCTGGGCTTTCGACCTGCGGGAGAGACCCAGCTTCAGCCT < 41bp 0.707069758630178 0.497480561401053 NA NA prediction 0.414139517260355 Functional Loss - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25944356 chr17:25944355 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10798 0 0 1 0 2 KSR1 chr17:25944321 3'AG 25944321 Downstream 35bp 10177 chr17 25944355 25944355 1 + A G THYM 25944356 + 25944336 25944376 41 TGCTGGGCTTTCGACCTGCAGGAGAGACCCAGCTTCAGCCT TGCTGGGCTTTCGACCTGCGGGAGAGACCCAGCTTCAGCCT < 41bp 0.707069758630178 0.497480561401053 NA NA prediction 0.414139517260355 Functional Loss - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25944356 chr17:25944355 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10798 0 0 1 0 2 KSR1 chr17:25944454 5'GT 25944454 Upstream 100bp 10178 chr1 169094257 169094257 1 + T G KIRP 169094258 + 169094238 169094278 41 TCAGCCCAGAGGGATGACATGATTTTTGAAGATTGTGGCGG TCAGCCCAGAGGGATGACAGGATTTTTGAAGATTGTGGCGG < 41bp 0.895533279543583 0.688466313367635 NA NA prediction 0.414133932351898 Functional Loss - ATP1B1 ENSG00000143153 CDS Human protein_coding chr1:169094258 chr1:169094257 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_10799 0 0 1 0 1 ATP1B1 chr1:169094277 5'GT 169094277 Upstream 21bp 10179 chr2 172409920 172409920 1 + T C rs16859487 172409921 + 172409901 172409941 41 TCTCTCCGAGCATTTCTCATGCCCATACATGTTTATTCTGG TCTCTCCGAGCATTTCTCACGCCCATACATGTTTATTCTGG < 41bp 0.736217708281781 0.529156061048464 NA NA prediction 0.414123294466634 Functional Loss - CYBRD1 ENSG00000071967 CDS Human protein_coding chr2:172409921 chr2:172409920 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_10800 0 0 1 0 2 CYBRD1 chr2:172409856 3'AG 172409856 Downstream 65bp 10180 chr2 172409920 172409920 1 + T C rs16859487 172409921 + 172409901 172409941 41 TCTCTCCGAGCATTTCTCATGCCCATACATGTTTATTCTGG TCTCTCCGAGCATTTCTCACGCCCATACATGTTTATTCTGG < 41bp 0.736217708281781 0.529156061048464 NA NA prediction 0.414123294466634 Functional Loss - CYBRD1 ENSG00000071967 CDS Human protein_coding chr2:172409921 chr2:172409920 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_10800 0 0 1 0 2 CYBRD1 chr2:172410010 5'GT 172410010 Upstream 91bp 10181 chr13 98652882 98652882 1 + T C CESC 98652883 + 98652863 98652903 41 ATGATCAAGGAACACATTATGCAAATGCTTCAAAATCGTAA ATGATCAAGGAACACATTACGCAAATGCTTCAAAATCGTAA < 41bp 0.733142069880942 0.52608164634158 NA NA prediction 0.414120847078725 Functional Loss - IPO5 ENSG00000065150 CDS Human protein_coding chr13:98652883 chr13:98652882 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10801 0 0 1 0 2 IPO5 chr13:98652793 3'AG 98652793 Downstream 90bp 10182 chr13 98652882 98652882 1 + T C CESC 98652883 + 98652863 98652903 41 ATGATCAAGGAACACATTATGCAAATGCTTCAAAATCGTAA ATGATCAAGGAACACATTACGCAAATGCTTCAAAATCGTAA < 41bp 0.733142069880942 0.52608164634158 NA NA prediction 0.414120847078725 Functional Loss - IPO5 ENSG00000065150 CDS Human protein_coding chr13:98652883 chr13:98652882 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10801 0 0 1 0 2 IPO5 chr13:98652899 5'GT 98652899 Upstream 18bp 10183 chr16 68712135 68712135 1 + T C rs138829996 68712136 + 68712116 68712156 41 GGGTGGTTGCTCCAATATCTGTCCCTGAAAATGGCAAGGGT GGGTGGTTGCTCCAATATCCGTCCCTGAAAATGGCAAGGGT < 41bp 0.710406034503518 0.503348874723084 NA NA prediction 0.414114319560868 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68712136 chr16:68712135 synonymous SNV . 0 20 hm7G_associated_SNPs_10803 1 0 0 0 2 CDH3 chr16:68712037 3'AG 68712037 Downstream 99bp 10184 chr16 68712135 68712135 1 + T C rs138829996 68712136 + 68712116 68712156 41 GGGTGGTTGCTCCAATATCTGTCCCTGAAAATGGCAAGGGT GGGTGGTTGCTCCAATATCCGTCCCTGAAAATGGCAAGGGT < 41bp 0.710406034503518 0.503348874723084 NA NA prediction 0.414114319560868 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68712136 chr16:68712135 synonymous SNV . 0 20 hm7G_associated_SNPs_10803 1 0 0 0 2 CDH3 chr16:68712180 5'GT 68712180 Upstream 46bp 10185 chr12 56494868 56494868 1 + T C HNSC 56494869 + 56494849 56494889 41 CTGCAGTTTCTGGGAGCAGTGAACGGTGCCCCCGTCCAGTC CTGCAGTTTCTGGGAGCAGCGAACGGTGCCCCCGTCCAGTC < 41bp 0.729876510593157 0.522822525950296 NA NA prediction 0.414107969285723 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56494869 chr12:56494868 synonymous SNV . 0 20 hm7G_associated_SNPs_10805 0 0 1 0 1 ERBB3 chr12:56494845 3'AG 56494845 Downstream 24bp 10186 chr3 184025191 184025191 1 + T C UCEC 184025192 + 184025172 184025212 41 AGGGCTGTACCTTTAGCACTGGCCCTCATCTCTGTTTCAAA AGGGCTGTACCTTTAGCACCGGCCCTCATCTCTGTTTCAAA < 41bp 0.729477700344769 0.522463138530576 NA NA prediction 0.414029123628387 Functional Loss - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184025192 chr3:184025191 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_10807 0 0 1 0 1 PSMD2 chr3:184025145 3'AG 184025145 Downstream 47bp 10187 chr7 20691047 20691047 1 + T C rs34603556 20691048 + 20691028 20691068 41 TCTTTGGATTGGCAGATCATGGTGGATGAGAATGACATCAG TCTTTGGATTGGCAGATCACGGTGGATGAGAATGACATCAG < 41bp 0.712990695924324 0.505993417284574 NA NA prediction 0.413994557279499 Functional Loss - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20691048 chr7:20691047 nonsynonymous SNV 0.016 1 20 hm7G_associated_SNPs_10808 0 0 0 0 1 ABCB5 chr7:20691043 3'AG 20691043 Downstream 5bp 10188 chr11 111571713 111571713 1 + A G HNSC 111571714 + 111571694 111571734 41 TTGAAGGGCAGCAGTATGAAGGACCACAGCTGGACATCTGG TTGAAGGGCAGCAGTATGAGGGACCACAGCTGGACATCTGG < 41bp 0.740171059235226 0.533174146722522 NA NA prediction 0.413993825025408 Functional Loss - SIK2 ENSG00000170145 CDS Human protein_coding chr11:111571714 chr11:111571713 synonymous SNV . 0 20 hm7G_associated_SNPs_10809 0 0 1 0 1 SIK2 chr11:111571734 5'GT 111571734 Upstream 22bp 10189 chr7 76111922 76111922 1 + T C rs141436878 76111923 + 76111903 76111943 41 GCGACGATGGCTCCTGGACTGCCTATGAAGCCAGCGTCTGT GCGACGATGGCTCCTGGACCGCCTATGAAGCCAGCGTCTGT < 41bp 0.711884089941614 0.504889619897733 NA NA prediction 0.413988940087762 Functional Loss - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76111923 chr7:76111922 synonymous SNV . 0 20 hm7G_associated_SNPs_10810 0 0 1 0 1 DTX2 chr7:76111825 3'AG 76111825 Downstream 98bp 10190 chr9 96429477 96429477 1 + T G LUAD 96429478 + 96429458 96429498 41 GCTGGCATCTTGGACCTGCTGCAGGCCAGTGAGGAGGTTGG GCTGGCATCTTGGACCTGCGGCAGGCCAGTGAGGAGGTTGG < 41bp 0.913895799984351 0.706902748198779 NA NA prediction 0.413986103571145 Functional Loss - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96429478 chr9:96429477 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10811 0 0 1 0 1 PHF2 chr9:96429522 5'GT 96429522 Upstream 46bp 10191 chr5 5239293 5239293 1 + T C UCEC 5239294 + 5239274 5239314 41 GTGACAATGTCCTTGGATCTGATGCTGTTGAAGACGTCTGT GTGACAATGTCCTTGGATCCGATGCTGTTGAAGACGTCTGT < 41bp 0.748233896284054 0.541256951827398 NA NA prediction 0.413953888913311 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5239294 chr5:5239293 synonymous SNV . 0 20 hm7G_associated_SNPs_10813 0 0 0 0 1 ADAMTS16 chr5:5239264 3'AG 5239264 Downstream 30bp 10192 chr4 48994066 48994066 1 + T C UCEC 48994067 + 48994047 48994087 41 ATGTCCAACAAAGTGATACTGACATTAAGTGCCATAGCCAC ATGTCCAACAAAGTGATACCGACATTAAGTGCCATAGCCAC < 41bp 0.712992297156213 0.506019668404981 NA NA prediction 0.413945257502464 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48994067 chr4:48994066 nonsynonymous SNV 0.720 4 20 hm7G_associated_SNPs_10814 0 0 0 0 1 CWH43 chr4:48994107 5'GT 48994107 Upstream 42bp 10193 chr22 31942902 31942902 1 + T C UCEC 31942903 + 31942883 31942923 41 CGAAGAATGGAAAGAGGAGTGGTGGGTTTTCCAGCACGAGT CGAAGAATGGAAAGAGGAGCGGTGGGTTTTCCAGCACGAGT < 41bp 0.707442705676381 0.500498746632525 NA NA prediction 0.413887918087712 Functional Loss - SFI1 ENSG00000198089 CDS Human protein_coding chr22:31942903 chr22:31942902 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_10816 0 0 1 0 2 SFI1 chr22:31942847 3'AG 31942847 Downstream 56bp 10194 chr22 31942902 31942902 1 + T C UCEC 31942903 + 31942883 31942923 41 CGAAGAATGGAAAGAGGAGTGGTGGGTTTTCCAGCACGAGT CGAAGAATGGAAAGAGGAGCGGTGGGTTTTCCAGCACGAGT < 41bp 0.707442705676381 0.500498746632525 NA NA prediction 0.413887918087712 Functional Loss - SFI1 ENSG00000198089 CDS Human protein_coding chr22:31942903 chr22:31942902 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_10816 0 0 1 0 2 SFI1 chr22:31942957 5'GT 31942957 Upstream 56bp 10195 chr7 157049709 157049709 1 + T C PRAD 157049710 + 157049690 157049730 41 GCTGAAGTTTGTAACAAGCTGCTCTCGACCCCCTCTCTTGG GCTGAAGTTTGTAACAAGCCGCTCTCGACCCCCTCTCTTGG < 41bp 0.717344004120277 0.510400510121198 NA NA prediction 0.413886987998159 Functional Loss - UBE3C ENSG00000009335 CDS Human protein_coding chr7:157049710 chr7:157049709 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_10817 0 0 1 0 1 UBE3C chr7:157049738 5'GT 157049738 Upstream 30bp 10196 chr4 146031299 146031299 1 + T G UCEC 146031300 + 146031280 146031320 41 TGACTTATTTCCGTGGATCTGAATTACAAAATTACTTTACA TGACTTATTTCCGTGGATCGGAATTACAAAATTACTTTACA < 41bp 0.70692888801715 0.391600219470195 NA NA prediction 0.413857776034301 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146031300 chr4:146031299 synonymous SNV . 0 20 hm7G_associated_SNPs_10819 0 0 1 0 2 ABCE1 chr4:146031255 3'AG 146031255 Downstream 45bp 10197 chr4 146031299 146031299 1 + T G UCEC 146031300 + 146031280 146031320 41 TGACTTATTTCCGTGGATCTGAATTACAAAATTACTTTACA TGACTTATTTCCGTGGATCGGAATTACAAAATTACTTTACA < 41bp 0.70692888801715 0.391600219470195 NA NA prediction 0.413857776034301 Functional Loss - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146031300 chr4:146031299 synonymous SNV . 0 20 hm7G_associated_SNPs_10819 0 0 1 0 2 ABCE1 chr4:146031392 5'GT 146031392 Upstream 94bp 10198 chr10 60559971 60559971 1 + T G UCEC 60559972 + 60559952 60559992 41 AGTCTCCAGATATAAAATATGGTGCAATATCCACTTCATCA AGTCTCCAGATATAAAATAGGGTGCAATATCCACTTCATCA < 41bp 0.706920528527256 0.390459226045759 NA NA prediction 0.413841057054511 Functional Loss - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60559972 chr10:60559971 stopgain 0.998 1 20 hm7G_associated_SNPs_10820 0 0 0 0 1 BICC1 chr10:60559954 3'AG 60559954 Downstream 18bp 10199 chr22 21350071 21350071 1 + A G UCEC 21350072 + 21350052 21350092 41 GACATGAAGGCATACCTGGAGGGAGCGGGCGCGGAATTCTG GACATGAAGGCATACCTGGGGGGAGCGGGCGCGGAATTCTG < 41bp 0.74644535552752 0.539526297946898 NA NA prediction 0.413838115161244 Functional Loss - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21350072 chr22:21350071 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_10821 0 0 1 0 2 LZTR1 chr22:21350035 3'AG 21350035 Downstream 37bp 10200 chr22 21350071 21350071 1 + A G UCEC 21350072 + 21350052 21350092 41 GACATGAAGGCATACCTGGAGGGAGCGGGCGCGGAATTCTG GACATGAAGGCATACCTGGGGGGAGCGGGCGCGGAATTCTG < 41bp 0.74644535552752 0.539526297946898 NA NA prediction 0.413838115161244 Functional Loss - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21350072 chr22:21350071 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_10821 0 0 1 0 2 LZTR1 chr22:21350161 5'GT 21350161 Upstream 91bp 10201 chr15 57924725 57924725 1 + A G LIHC 57924726 + 57924706 57924746 41 GAAGCTGCAGGAAGAACAGAGGAAGCACAGTGCTGAGAAGG GAAGCTGCAGGAAGAACAGGGGAAGCACAGTGCTGAGAAGG < 41bp 0.733935067340577 0.527017479321975 NA NA prediction 0.413835176037203 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57924726 chr15:57924725 nonsynonymous SNV 0.677 1 20 hm7G_associated_SNPs_10822 0 0 0 1 2 GCOM1;MYZAP chr15:57924632 3'AG 57924632 Downstream 94bp 10202 chr15 57924725 57924725 1 + A G LIHC 57924726 + 57924706 57924746 41 GAAGCTGCAGGAAGAACAGAGGAAGCACAGTGCTGAGAAGG GAAGCTGCAGGAAGAACAGGGGAAGCACAGTGCTGAGAAGG < 41bp 0.733935067340577 0.527017479321975 NA NA prediction 0.413835176037203 Functional Loss - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57924726 chr15:57924725 nonsynonymous SNV 0.677 1 20 hm7G_associated_SNPs_10822 0 0 0 1 2 GCOM1;MYZAP chr15:57924757 5'GT 57924757 Upstream 33bp 10203 chr12 53685478 53685478 1 + T G SKCM 53685479 + 53685459 53685499 41 ACTGTTTCCCTGCAGATCATGCTCAGTGGTGCCGGTGCCCT ACTGTTTCCCTGCAGATCAGGCTCAGTGGTGCCGGTGCCCT < 41bp 0.911116940954901 0.70420180958621 NA NA prediction 0.41383026273738 Functional Loss - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685479 chr12:53685478 nonsynonymous SNV 0.151 1 20 hm7G_associated_SNPs_10823 0 0 1 0 1 ESPL1 chr12:53685474 3'AG 53685474 Downstream 5bp 10204 chr3 14939497 14939497 1 + T C UCEC 14939498 + 14939478 14939518 41 TGGCCCGGGAGCAGGGGTTTGATCACCACGCCACTCACATC TGGCCCGGGAGCAGGGGTTCGATCACCACGCCACTCACATC < 41bp 0.735680779302401 0.528769260756557 NA NA prediction 0.413823037091687 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14939498 chr3:14939497 synonymous SNV . 0 20 hm7G_associated_SNPs_10824 0 0 0 0 1 FGD5 chr3:14939446 3'AG 14939446 Downstream 52bp 10205 chr17 6663867 6663867 1 + T C rs35205123 6663868 + 6663848 6663888 41 CAGTTCATCATGCACCGCATGCTCGCCCAGCACAGAGATGT CAGTTCATCATGCACCGCACGCTCGCCCAGCACAGAGATGT < 41bp 0.706906115985009 0.495745801464538 NA NA prediction 0.413812231970018 Functional Loss - XAF1 ENSG00000132530 CDS Human protein_coding chr17:6663868 chr17:6663867 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_10825 0 0 0 0 1 XAF1 chr17:6663920 5'GT 6663920 Upstream 54bp 10206 chr1 155039883 155039883 1 + A G COAD 155039884 + 155039864 155039904 41 GAGTTCTGGCCAGTGCTTGAGGCTCCAGGTGTCTGTCTGCT GAGTTCTGGCCAGTGCTTGGGGCTCCAGGTGTCTGTCTGCT < 41bp 0.747014399957429 0.540111560373592 NA NA prediction 0.413805679167673 Functional Loss - EFNA4 ENSG00000243364 CDS Human protein_coding chr1:155039884 chr1:155039883 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_10827 0 0 1 0 2 EFNA4 chr1:155039848 3'AG 155039848 Downstream 36bp 10207 chr1 155039883 155039883 1 + A G COAD 155039884 + 155039864 155039904 41 GAGTTCTGGCCAGTGCTTGAGGCTCCAGGTGTCTGTCTGCT GAGTTCTGGCCAGTGCTTGGGGCTCCAGGTGTCTGTCTGCT < 41bp 0.747014399957429 0.540111560373592 NA NA prediction 0.413805679167673 Functional Loss - EFNA4 ENSG00000243364 CDS Human protein_coding chr1:155039884 chr1:155039883 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_10827 0 0 1 0 2 EFNA4 chr1:155039916 5'GT 155039916 Upstream 34bp 10208 chr11 65347680 65347680 1 + T C SKCM 65347681 + 65347661 65347701 41 CAGTGAAGGTGGTGCAGGCTGAGCTGAGCCTCACTCTTTCC CAGTGAAGGTGGTGCAGGCCGAGCTGAGCCTCACTCTTTCC < 41bp 0.717153818752626 0.510260788412036 NA NA prediction 0.41378606068118 Functional Loss - EHBP1L1 ENSG00000173442 CDS Human protein_coding chr11:65347681 chr11:65347680 synonymous SNV . 0 20 hm7G_associated_SNPs_10828 0 0 1 0 1 EHBP1L1 chr11:65347730 5'GT 65347730 Upstream 51bp 10209 chr5 79974830 79974830 1 + A G rs55660516 79974831 + 79974811 79974851 41 GCTAGAAACCCGGATGTCAAGCCTGCAGCCAGTAGAGCTGC GCTAGAAACCCGGATGTCAGGCCTGCAGCCAGTAGAGCTGC < 41bp 0.720739740375447 0.513851116699514 NA NA prediction 0.413777247351865 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79974831 chr5:79974830 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_10829 0 0 1 0 2 MSH3 chr5:79974746 3'AG 79974746 Downstream 85bp 10210 chr5 79974830 79974830 1 + A G rs55660516 79974831 + 79974811 79974851 41 GCTAGAAACCCGGATGTCAAGCCTGCAGCCAGTAGAGCTGC GCTAGAAACCCGGATGTCAGGCCTGCAGCCAGTAGAGCTGC < 41bp 0.720739740375447 0.513851116699514 NA NA prediction 0.413777247351865 Functional Loss - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79974831 chr5:79974830 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_10829 0 0 1 0 2 MSH3 chr5:79974912 5'GT 79974912 Upstream 83bp 10211 chr19 49990344 49990344 1 + A G rs531785269 49990345 + 49990325 49990365 41 AGGAGGATCCCTTGAGCCCAGGAAGTGGAGGCTGCGGTGAG AGGAGGATCCCTTGAGCCCGGGAAGTGGAGGCTGCGGTGAG < 41bp 0.736687063876691 0.529819395827098 NA NA prediction 0.413735336099186 Functional Loss - RPL13A;RPL13AP5;FLT3LG ENSG00000273189 ncRNA_exonic Human processed_transcript chr19:49990345 chr19:49990344 . . 0 20 hm7G_associated_SNPs_10832 0 0 0 0 1 RPL13A;RPL13AP5;FLT3LG chr19:49990274 3'AG 49990274 Downstream 71bp 10212 chr3 36527720 36527720 1 + T C rs45549732 36527721 + 36527701 36527741 41 GCAGCTCCGGCAGTGGCTCTGACTCACCTCACAGAACCTCT GCAGCTCCGGCAGTGGCTCCGACTCACCTCACAGAACCTCT < 41bp 0.747242363535919 0.540376231894131 NA NA prediction 0.413732263283575 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36527721 chr3:36527720 synonymous SNV . 0 20 hm7G_associated_SNPs_10833 0 0 0 1 2 STAC chr3:36527626 3'AG 36527626 Downstream 95bp 10213 chr3 36527720 36527720 1 + T C rs45549732 36527721 + 36527701 36527741 41 GCAGCTCCGGCAGTGGCTCTGACTCACCTCACAGAACCTCT GCAGCTCCGGCAGTGGCTCCGACTCACCTCACAGAACCTCT < 41bp 0.747242363535919 0.540376231894131 NA NA prediction 0.413732263283575 Functional Loss - STAC ENSG00000144681 CDS Human protein_coding chr3:36527721 chr3:36527720 synonymous SNV . 0 20 hm7G_associated_SNPs_10833 0 0 0 1 2 STAC chr3:36527741 5'GT 36527741 Upstream 22bp 10214 chr9 140611121 140611121 1 + A G rs76684726 140611122 + 140611102 140611142 41 GCTCAGCAGAGAAACAGGCAGGAGAGGCCCACATGGCTGCG GCTCAGCAGAGAAACAGGCGGGAGAGGCCCACATGGCTGCG < 41bp 0.728848687222131 0.521988344576751 NA NA prediction 0.41372068529076 Functional Loss - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140611122 chr9:140611121 synonymous SNV . 0 20 hm7G_associated_SNPs_10835 0 0 1 0 1 EHMT1 chr9:140611078 3'AG 140611078 Downstream 44bp 10215 chr22 44359231 44359231 1 + T C CESC 44359232 + 44359212 44359252 41 GAGAAGAAGCTGAATTTGTTGAAGTTGAGCCTGAAGCTAAA GAGAAGAAGCTGAATTTGTCGAAGTTGAGCCTGAAGCTAAA < 41bp 0.70962613260806 0.502768469143232 NA NA prediction 0.413715326929655 Functional Loss - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44359232 chr22:44359231 synonymous SNV . 0 20 hm7G_associated_SNPs_10837 0 0 1 0 1 SAMM50 chr22:44359276 5'GT 44359276 Upstream 46bp 10216 chr1 154516462 154516462 1 + T C COAD 154516463 + 154516443 154516483 41 TCCTTCCTGGTGCTGCTCCTGAGGGAATGCTTCCGAGACCT TCCTTCCTGGTGCTGCTCCCGAGGGAATGCTTCCGAGACCT < 41bp 0.713635702636898 0.506780443834257 NA NA prediction 0.413710517605282 Functional Loss - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516463 chr1:154516462 nonsynonymous SNV 0.018 1 20 hm7G_associated_SNPs_10838 0 0 0 0 1 TDRD10 chr1:154516439 3'AG 154516439 Downstream 24bp 10217 chr3 37544757 37544757 1 + T C UCS 37544758 + 37544738 37544778 41 GACAACACCTATTTAAAACTGAACGACGAAGTGATCATGAA GACAACACCTATTTAAAACCGAACGACGAAGTGATCATGAA < 41bp 0.713340789700068 0.506489018032077 NA NA prediction 0.41370354333598 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37544758 chr3:37544757 nonsynonymous SNV 0.462 1 20 hm7G_associated_SNPs_10839 0 0 1 0 2 ITGA9 chr3:37544669 3'AG 37544669 Downstream 89bp 10218 chr3 37544757 37544757 1 + T C UCS 37544758 + 37544738 37544778 41 GACAACACCTATTTAAAACTGAACGACGAAGTGATCATGAA GACAACACCTATTTAAAACCGAACGACGAAGTGATCATGAA < 41bp 0.713340789700068 0.506489018032077 NA NA prediction 0.41370354333598 Functional Loss - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37544758 chr3:37544757 nonsynonymous SNV 0.462 1 20 hm7G_associated_SNPs_10839 0 0 1 0 2 ITGA9 chr3:37544798 5'GT 37544798 Upstream 42bp 10219 chr3 50683670 50683670 1 + T C STAD 50683671 + 50683651 50683691 41 AGTACGGCTTCCCCAATCCTGAGTGGTCAGAAGTCTCTGAG AGTACGGCTTCCCCAATCCCGAGTGGTCAGAAGTCTCTGAG < 41bp 0.743237004469598 0.536396474881602 NA NA prediction 0.413681059175992 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683671 chr3:50683670 synonymous SNV . 0 20 hm7G_associated_SNPs_10840 0 0 1 0 2 MAPKAPK3 chr3:50683571 3'AG 50683571 Downstream 100bp 10220 chr3 50683670 50683670 1 + T C STAD 50683671 + 50683651 50683691 41 AGTACGGCTTCCCCAATCCTGAGTGGTCAGAAGTCTCTGAG AGTACGGCTTCCCCAATCCCGAGTGGTCAGAAGTCTCTGAG < 41bp 0.743237004469598 0.536396474881602 NA NA prediction 0.413681059175992 Functional Loss - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683671 chr3:50683670 synonymous SNV . 0 20 hm7G_associated_SNPs_10840 0 0 1 0 2 MAPKAPK3 chr3:50683695 5'GT 50683695 Upstream 26bp 10221 chr9 131482549 131482549 1 + A G UCEC 131482550 + 131482530 131482570 41 GCCGAGGAGATCAAGGTCCAGCCATTCTTCAGGGTGAGCGG GCCGAGGAGATCAAGGTCCGGCCATTCTTCAGGGTGAGCGG < 41bp 0.765398059019917 0.55857210779411 NA NA prediction 0.413651902451615 Functional Loss - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131482550 chr9:131482549 nonsynonymous SNV 0.919 1 20 hm7G_associated_SNPs_10841 0 0 1 0 1 PKN3 chr9:131482482 3'AG 131482482 Downstream 68bp 10222 chr14 21546603 21546603 1 + T G SKCM 21546604 + 21546584 21546624 41 TGACGGCACTGCAGAGGGATGGGGGGGCCATCCTGATGAGG TGACGGCACTGCAGAGGGAGGGGGGGGCCATCCTGATGAGG < 41bp 0.706825059248763 0.358125387359984 NA NA prediction 0.413650118497526 Functional Loss - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21546604 chr14:21546603 nonsynonymous SNV 0.909 0 20 hm7G_associated_SNPs_10842 0 0 1 0 2 ARHGEF40 chr14:21546532 3'AG 21546532 Downstream 72bp 10223 chr14 21546603 21546603 1 + T G SKCM 21546604 + 21546584 21546624 41 TGACGGCACTGCAGAGGGATGGGGGGGCCATCCTGATGAGG TGACGGCACTGCAGAGGGAGGGGGGGGCCATCCTGATGAGG < 41bp 0.706825059248763 0.358125387359984 NA NA prediction 0.413650118497526 Functional Loss - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21546604 chr14:21546603 nonsynonymous SNV 0.909 0 20 hm7G_associated_SNPs_10842 0 0 1 0 2 ARHGEF40 chr14:21546647 5'GT 21546647 Upstream 45bp 10224 chr5 149581924 149581924 1 + T C GBM 149581925 + 149581905 149581945 41 CACAGGTGTGGATTGAAGCTGCTCTTCAGATCTTCTATTCC CACAGGTGTGGATTGAAGCCGCTCTTCAGATCTTCTATTCC < 41bp 0.711598426075431 0.504775627360163 NA NA prediction 0.413645597430535 Functional Loss - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149581925 chr5:149581924 synonymous SNV . 0 20 hm7G_associated_SNPs_10843 0 0 0 0 2 SLC6A7 chr5:149581910 3'AG 149581910 Downstream 15bp 10225 chr5 149581924 149581924 1 + T C GBM 149581925 + 149581905 149581945 41 CACAGGTGTGGATTGAAGCTGCTCTTCAGATCTTCTATTCC CACAGGTGTGGATTGAAGCCGCTCTTCAGATCTTCTATTCC < 41bp 0.711598426075431 0.504775627360163 NA NA prediction 0.413645597430535 Functional Loss - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149581925 chr5:149581924 synonymous SNV . 0 20 hm7G_associated_SNPs_10843 0 0 0 0 2 SLC6A7 chr5:149582013 5'GT 149582013 Upstream 90bp 10226 chr8 22863481 22863481 1 + T C STAD 22863482 + 22863462 22863502 41 CCCACCCGCAGATCTGATGTGGTGGTTCTGTGCTTCTCCAT CCCACCCGCAGATCTGATGCGGTGGTTCTGTGCTTCTCCAT < 41bp 0.725151888342645 0.518340256316679 NA NA prediction 0.413623264051931 Functional Loss - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22863482 chr8:22863481 nonsynonymous SNV 0.928 4 20 hm7G_associated_SNPs_10844 0 0 0 0 1 RHOBTB2 chr8:22863473 3'AG 22863473 Downstream 9bp 10227 chr8 2037929 2037929 1 + T C SARC 2037930 + 2037910 2037950 41 TCATGGAAGGGAAGTCTTATGTGTTCCGAGTGCTGTCAGCA TCATGGAAGGGAAGTCTTACGTGTTCCGAGTGCTGTCAGCA < 41bp 0.708001463874179 0.501198535594491 NA NA prediction 0.413605856559375 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2037930 chr8:2037929 synonymous SNV . 0 20 hm7G_associated_SNPs_10845 0 0 0 0 2 MYOM2 chr8:2037831 3'AG 2037831 Downstream 99bp 10228 chr8 2037929 2037929 1 + T C SARC 2037930 + 2037910 2037950 41 TCATGGAAGGGAAGTCTTATGTGTTCCGAGTGCTGTCAGCA TCATGGAAGGGAAGTCTTACGTGTTCCGAGTGCTGTCAGCA < 41bp 0.708001463874179 0.501198535594491 NA NA prediction 0.413605856559375 Functional Loss - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2037930 chr8:2037929 synonymous SNV . 0 20 hm7G_associated_SNPs_10845 0 0 0 0 2 MYOM2 chr8:2038014 5'GT 2038014 Upstream 86bp 10229 chr14 23313912 23313912 1 + A G STAD 23313913 + 23313893 23313933 41 ACATTAAGGAGCTGGGCCGAGGGCTGCCTACCGACAAGATT ACATTAAGGAGCTGGGCCGGGGGCTGCCTACCGACAAGATT < 41bp 0.706799587935017 0.491824075739591 NA NA prediction 0.413599175870034 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23313913 chr14:23313912 synonymous SNV . 0 20 hm7G_associated_SNPs_10846 0 0 0 0 2 MMP14 chr14:23313839 3'AG 23313839 Downstream 74bp 10230 chr14 23313912 23313912 1 + A G STAD 23313913 + 23313893 23313933 41 ACATTAAGGAGCTGGGCCGAGGGCTGCCTACCGACAAGATT ACATTAAGGAGCTGGGCCGGGGGCTGCCTACCGACAAGATT < 41bp 0.706799587935017 0.491824075739591 NA NA prediction 0.413599175870034 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23313913 chr14:23313912 synonymous SNV . 0 20 hm7G_associated_SNPs_10846 0 0 0 0 2 MMP14 chr14:23313989 5'GT 23313989 Upstream 78bp 10231 chr8 144464012 144464012 1 + A G STAD 144464013 + 144463993 144464033 41 AGGGCGACTACATTGTGTCAGTGAATGGGCAGCCATGCAGG AGGGCGACTACATTGTGTCGGTGAATGGGCAGCCATGCAGG < 41bp 0.70679094733489 0.493450882748727 NA NA prediction 0.41358189466978 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144464013 chr8:144464012 synonymous SNV . 0 20 hm7G_associated_SNPs_10847 0 0 1 0 1 RHPN1 chr8:144463977 3'AG 144463977 Downstream 36bp 10232 chr11 60538787 60538787 1 + A G UCEC 60538788 + 60538768 60538808 41 TCATCTCCGGATCCCTCTCAGTGGCAGCCGAGAAGAACCAC TCATCTCCGGATCCCTCTCGGTGGCAGCCGAGAAGAACCAC < 41bp 0.722993611479978 0.516207178019543 NA NA prediction 0.41357286692087 Functional Loss - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60538788 chr11:60538787 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10848 0 0 0 0 2 MS4A15 chr11:60538764 3'AG 60538764 Downstream 24bp 10233 chr11 60538787 60538787 1 + A G UCEC 60538788 + 60538768 60538808 41 TCATCTCCGGATCCCTCTCAGTGGCAGCCGAGAAGAACCAC TCATCTCCGGATCCCTCTCGGTGGCAGCCGAGAAGAACCAC < 41bp 0.722993611479978 0.516207178019543 NA NA prediction 0.41357286692087 Functional Loss - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60538788 chr11:60538787 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10848 0 0 0 0 2 MS4A15 chr11:60538820 5'GT 60538820 Upstream 34bp 10234 chrX 47102091 47102091 1 + A G rs769763813 47102092 + 47102072 47102112 41 GCTAGAGGAGCCTCTGAGCAGCATCTTGGACCGTGATGATA GCTAGAGGAGCCTCTGAGCGGCATCTTGGACCGTGATGATA < 41bp 0.762123493480897 0.555342013916819 NA NA prediction 0.413562959128156 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47102092 chrX:47102091 nonsynonymous SNV 0.668 0 20 hm7G_associated_SNPs_10851 0 0 1 0 2 USP11 chrX:47102025 3'AG 47102025 Downstream 67bp 10235 chrX 47102091 47102091 1 + A G rs769763813 47102092 + 47102072 47102112 41 GCTAGAGGAGCCTCTGAGCAGCATCTTGGACCGTGATGATA GCTAGAGGAGCCTCTGAGCGGCATCTTGGACCGTGATGATA < 41bp 0.762123493480897 0.555342013916819 NA NA prediction 0.413562959128156 Functional Loss - USP11 ENSG00000102226 CDS Human protein_coding chrX:47102092 chrX:47102091 nonsynonymous SNV 0.668 0 20 hm7G_associated_SNPs_10851 0 0 1 0 2 USP11 chrX:47102119 5'GT 47102119 Upstream 29bp 10236 chr1 87031612 87031612 1 + T C KIRC 87031613 + 87031593 87031633 41 TTTAAAAACACCATACCCATGGTGACACCACCTCCTCCACC TTTAAAAACACCATACCCACGGTGACACCACCTCCTCCACC < 41bp 0.717285644175056 0.510506429580086 NA NA prediction 0.413558429189939 Functional Loss - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87031613 chr1:87031612 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_10853 0 0 0 0 1 CLCA4 chr1:87031703 5'GT 87031703 Upstream 92bp 10237 chr1 12024799 12024799 1 + A G rs576907642 12024800 + 12024780 12024820 41 GATCTCTTCCACCACAGCAAGCTGGACCCCGACATGGCCTT GATCTCTTCCACCACAGCAGGCTGGACCCCGACATGGCCTT < 41bp 0.7656893726535 0.558911099464262 NA NA prediction 0.413556546378476 Functional Loss - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12024800 chr1:12024799 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_10854 0 0 1 0 2 PLOD1 chr1:12024701 3'AG 12024701 Downstream 99bp 10238 chr1 12024799 12024799 1 + A G rs576907642 12024800 + 12024780 12024820 41 GATCTCTTCCACCACAGCAAGCTGGACCCCGACATGGCCTT GATCTCTTCCACCACAGCAGGCTGGACCCCGACATGGCCTT < 41bp 0.7656893726535 0.558911099464262 NA NA prediction 0.413556546378476 Functional Loss - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12024800 chr1:12024799 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_10854 0 0 1 0 2 PLOD1 chr1:12024842 5'GT 12024842 Upstream 44bp 10239 chr1 28861843 28861843 1 + A G LUAD 28861844 + 28861824 28861864 41 GCGGGGAACAGGGCCAGCTAGGCCGTGTGCCTGAGTTATTT GCGGGGAACAGGGCCAGCTGGGCCGTGTGCCTGAGTTATTT < 41bp 0.706777227073228 0.477528141726865 NA NA prediction 0.413554454146457 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861844 chr1:28861843 synonymous SNV . 0 20 hm7G_associated_SNPs_10855 0 0 1 0 2 RCC1 chr1:28861770 3'AG 28861770 Downstream 74bp 10240 chr1 28861843 28861843 1 + A G LUAD 28861844 + 28861824 28861864 41 GCGGGGAACAGGGCCAGCTAGGCCGTGTGCCTGAGTTATTT GCGGGGAACAGGGCCAGCTGGGCCGTGTGCCTGAGTTATTT < 41bp 0.706777227073228 0.477528141726865 NA NA prediction 0.413554454146457 Functional Loss - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28861844 chr1:28861843 synonymous SNV . 0 20 hm7G_associated_SNPs_10855 0 0 1 0 2 RCC1 chr1:28861892 5'GT 28861892 Upstream 50bp 10241 chr16 57009028 57009028 1 + T C UCEC 57009029 + 57009009 57009049 41 TCAGGCAGTGCTGGAGACCTGGGGCTTCAACACCAACCAGG TCAGGCAGTGCTGGAGACCCGGGGCTTCAACACCAACCAGG < 41bp 0.720738276305632 0.513966569848145 NA NA prediction 0.413543412914974 Functional Loss - CETP ENSG00000087237 CDS Human protein_coding chr16:57009029 chr16:57009028 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_10856 0 0 0 0 2 CETP chr16:57009013 3'AG 57009013 Downstream 16bp 10242 chr16 57009028 57009028 1 + T C UCEC 57009029 + 57009009 57009049 41 TCAGGCAGTGCTGGAGACCTGGGGCTTCAACACCAACCAGG TCAGGCAGTGCTGGAGACCCGGGGCTTCAACACCAACCAGG < 41bp 0.720738276305632 0.513966569848145 NA NA prediction 0.413543412914974 Functional Loss - CETP ENSG00000087237 CDS Human protein_coding chr16:57009029 chr16:57009028 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_10856 0 0 0 0 2 CETP chr16:57009063 5'GT 57009063 Upstream 36bp 10243 chr1 150529259 150529259 1 + T C UCEC 150529260 + 150529240 150529280 41 GGCCCCACCACCCAGCCTGTGGATGTCTATGTGAGCCTGGG GGCCCCACCACCCAGCCTGCGGATGTCTATGTGAGCCTGGG < 41bp 0.706770569603125 0.49622876557843 NA NA prediction 0.413541139206249 Functional Loss - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150529260 chr1:150529259 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_10857 0 0 1 0 1 ADAMTSL4 chr1:150529269 5'GT 150529269 Upstream 11bp 10244 chr1 209602622 209602622 1 + T G rs575075385 209602623 + 209602603 209602643 41 AGTGTTGGGATCACAGGCGTGAGCCACCGCATCCGGCCTCA AGTGTTGGGATCACAGGCGGGAGCCACCGCATCCGGCCTCA < 41bp 0.742008233731751 0.535259035824765 NA NA prediction 0.413498395813971 Functional Loss - MIR205HG ENSG00000230937 ncRNA_exonic Human processed_transcript chr1:209602623 chr1:209602622 . . 0 20 hm7G_associated_SNPs_10859 0 0 0 0 1 MIR205HG chr1:209602526 3'AG 209602526 Downstream 97bp 10245 chr12 52309876 52309876 1 + A G STAD 52309877 + 52309857 52309897 41 GGACATCGGCAACAACCCGAGAGTGGGCACCAAGCGGTACA GGACATCGGCAACAACCCGGGAGTGGGCACCAAGCGGTACA < 41bp 0.726193088379805 0.519446231917749 NA NA prediction 0.413493712924111 Functional Loss - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309877 chr12:52309876 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_10860 0 0 0 0 1 ACVRL1 chr12:52309820 3'AG 52309820 Downstream 57bp 10246 chr1 150477408 150477408 1 + T C LUSC 150477409 + 150477389 150477429 41 TGGCTGTCCCCGTTCCAGGTGGTGGTCATCCCTGTGGGGAG TGGCTGTCCCCGTTCCAGGCGGTGGTCATCCCTGTGGGGAG < 41bp 0.749714128572247 0.542975140140003 NA NA prediction 0.413477976864487 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477409 chr1:150477408 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_10861 0 0 1 0 2 TARS2 chr1:150477382 3'AG 150477382 Downstream 27bp 10247 chr1 150477408 150477408 1 + T C LUSC 150477409 + 150477389 150477429 41 TGGCTGTCCCCGTTCCAGGTGGTGGTCATCCCTGTGGGGAG TGGCTGTCCCCGTTCCAGGCGGTGGTCATCCCTGTGGGGAG < 41bp 0.749714128572247 0.542975140140003 NA NA prediction 0.413477976864487 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477409 chr1:150477408 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_10861 0 0 1 0 2 TARS2 chr1:150477454 5'GT 150477454 Upstream 47bp 10248 chr22 31484691 31484691 1 + A G COAD 31484692 + 31484672 31484712 41 CTCTTACCCACAGTTGCGAAGCGCTGGTGAGTATGAGGAGC CTCTTACCCACAGTTGCGAGGCGCTGGTGAGTATGAGGAGC < 41bp 0.706729191328083 0.476960930432936 NA NA prediction 0.413458382656166 Functional Loss - SMTN ENSG00000183963 CDS Human protein_coding chr22:31484692 chr22:31484691 nonsynonymous SNV 0.893 0 20 hm7G_associated_SNPs_10864 0 0 1 0 1 SMTN chr22:31484685 3'AG 31484685 Downstream 7bp 10249 chr3 14939167 14939167 1 + T C LGG 14939168 + 14939148 14939188 41 GAGGAGCTGGAGGAAAGGCTGTCAAATTGGTGAGCAGTCCC GAGGAGCTGGAGGAAAGGCCGTCAAATTGGTGAGCAGTCCC < 41bp 0.706727990425601 0.497728405834725 NA NA prediction 0.413455980851203 Functional Loss - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14939168 chr3:14939167 nonsynonymous SNV 0.881 3 20 hm7G_associated_SNPs_10865 0 0 0 0 1 FGD5 chr3:14939176 5'GT 14939176 Upstream 10bp 10250 chr9 34493300 34493300 1 + A G HNSC 34493301 + 34493281 34493321 41 ATCAGGGAAGATGGCCATGAGGAAGCTGACATCTATGGAGT ATCAGGGAAGATGGCCATGGGGAAGCTGACATCTATGGAGT < 41bp 0.73753649050998 0.53080952795314 NA NA prediction 0.413453925113681 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34493301 chr9:34493300 nonsynonymous SNV 0.811 0 20 hm7G_associated_SNPs_10866 0 0 0 0 1 DNAI1 chr9:34493326 5'GT 34493326 Upstream 27bp 10251 chr11 64119810 64119810 1 + A G UCEC 64119811 + 64119791 64119831 41 GTGCGGCACCGAGACCTCAAGGCCAACATGCGGGCACTGGA GTGCGGCACCGAGACCTCAGGGCCAACATGCGGGCACTGGA < 41bp 0.706724377735285 0.483671155975299 NA NA prediction 0.41344875547057 Functional Loss - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64119811 chr11:64119810 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10867 0 0 0 0 1 CCDC88B chr11:64119858 5'GT 64119858 Upstream 49bp 10252 chr20 31627291 31627291 1 + A G rs4911287 31627292 + 31627272 31627312 41 GTTCGCAGCTCGGTGGCGGAGCAAGGCTCCAATGTCCCTCT GTTCGCAGCTCGGTGGCGGGGCAAGGCTCCAATGTCCCTCT < 41bp 0.757393198705154 0.550676652657339 NA NA prediction 0.413433092095629 Functional Loss - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31627292 chr20:31627291 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_10868 0 0 0 0 1 BPIFB6 chr20:31627326 5'GT 31627326 Upstream 36bp 10253 chr12 659023 659023 1 + T C STAD 659024 + 659004 659044 41 CCAACGCTCTTCCCAGGGATGAGCAGCCGCCCGCTGACATG CCAACGCTCTTCCCAGGGACGAGCAGCCGCCCGCTGACATG < 41bp 0.727814143590258 0.521104201908021 NA NA prediction 0.413419883364475 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:659024 chr12:659023 synonymous SNV . 0 20 hm7G_associated_SNPs_10869 0 0 1 0 2 B4GALNT3 chr12:658935 3'AG 658935 Downstream 89bp 10254 chr12 659023 659023 1 + T C STAD 659024 + 659004 659044 41 CCAACGCTCTTCCCAGGGATGAGCAGCCGCCCGCTGACATG CCAACGCTCTTCCCAGGGACGAGCAGCCGCCCGCTGACATG < 41bp 0.727814143590258 0.521104201908021 NA NA prediction 0.413419883364475 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:659024 chr12:659023 synonymous SNV . 0 20 hm7G_associated_SNPs_10869 0 0 1 0 2 B4GALNT3 chr12:659078 5'GT 659078 Upstream 56bp 10255 chrX 15561231 15561231 1 + T C UCEC 15561232 + 15561212 15561252 41 GTGGACAGAGATCTCTGTGTGAAAGTATCTGACTTTGGAAT GTGGACAGAGATCTCTGTGCGAAAGTATCTGACTTTGGAAT < 41bp 0.730992351506261 0.524287294243337 NA NA prediction 0.413410114525848 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15561232 chrX:15561231 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_10870 0 0 0 0 2 BMX chrX:15561194 3'AG 15561194 Downstream 38bp 10256 chrX 15561231 15561231 1 + T C UCEC 15561232 + 15561212 15561252 41 GTGGACAGAGATCTCTGTGTGAAAGTATCTGACTTTGGAAT GTGGACAGAGATCTCTGTGCGAAAGTATCTGACTTTGGAAT < 41bp 0.730992351506261 0.524287294243337 NA NA prediction 0.413410114525848 Functional Loss - BMX ENSG00000102010 CDS Human protein_coding chrX:15561232 chrX:15561231 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_10870 0 0 0 0 2 BMX chrX:15561258 5'GT 15561258 Upstream 28bp 10257 chr11 125280153 125280153 1 + T C BRCA 125280154 + 125280134 125280174 41 AATAACCCCCAGGGGATTGTGGTCCCAGCCTCAGCGCTCCA AATAACCCCCAGGGGATTGCGGTCCCAGCCTCAGCGCTCCA < 41bp 0.754330840863278 0.547632798001977 NA NA prediction 0.413396085722601 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125280154 chr11:125280153 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10871 0 0 0 0 2 PKNOX2 chr11:125280092 3'AG 125280092 Downstream 62bp 10258 chr11 125280153 125280153 1 + T C BRCA 125280154 + 125280134 125280174 41 AATAACCCCCAGGGGATTGTGGTCCCAGCCTCAGCGCTCCA AATAACCCCCAGGGGATTGCGGTCCCAGCCTCAGCGCTCCA < 41bp 0.754330840863278 0.547632798001977 NA NA prediction 0.413396085722601 Functional Loss - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125280154 chr11:125280153 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10871 0 0 0 0 2 PKNOX2 chr11:125280221 5'GT 125280221 Upstream 69bp 10259 chr5 38350610 38350610 1 + T C COAD 38350611 + 38350591 38350631 41 GGTCATTGACAGGAGGAAGTGATTGGAGATTTGAAACCAGG GGTCATTGACAGGAGGAAGCGATTGGAGATTTGAAACCAGG < 41bp 0.726362594020291 0.519666476535601 NA NA prediction 0.413392234969379 Functional Loss - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38350611 chr5:38350610 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_10872 0 0 0 0 1 EGFLAM chr5:38350603 3'AG 38350603 Downstream 8bp 10260 chr4 187177180 187177180 1 + T C STAD 187177181 + 187177161 187177201 41 TATGCCTACCTTCCAAAGGTGACACAAGCACAATTTATACC TATGCCTACCTTCCAAAGGCGACACAAGCACAATTTATACC < 41bp 0.72907630318069 0.52238635513781 NA NA prediction 0.41337989608576 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187177181 chr4:187177180 synonymous SNV . 0 20 hm7G_associated_SNPs_10873 0 0 0 0 2 KLKB1 chr4:187177146 3'AG 187177146 Downstream 35bp 10261 chr4 187177180 187177180 1 + T C STAD 187177181 + 187177161 187177201 41 TATGCCTACCTTCCAAAGGTGACACAAGCACAATTTATACC TATGCCTACCTTCCAAAGGCGACACAAGCACAATTTATACC < 41bp 0.72907630318069 0.52238635513781 NA NA prediction 0.41337989608576 Functional Loss - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187177181 chr4:187177180 synonymous SNV . 0 20 hm7G_associated_SNPs_10873 0 0 0 0 2 KLKB1 chr4:187177241 5'GT 187177241 Upstream 62bp 10262 chr4 494347 494347 1 + T C UCEC 494348 + 494328 494368 41 GGAGCATCTCACAGTTTTGTGGCTGAAGCAAAGCCACCTAC GGAGCATCTCACAGTTTTGCGGCTGAAGCAAAGCCACCTAC < 41bp 0.720247553781374 0.513563887614545 NA NA prediction 0.413367332333658 Functional Loss - PIGG ENSG00000174227 CDS Human protein_coding chr4:494348 chr4:494347 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_10874 0 0 1 0 1 PIGG chr4:494390 5'GT 494390 Upstream 44bp 10263 chr15 91009526 91009526 1 + T C rs60039984 91009527 + 91009507 91009547 41 TAGGAATCTTTGCCATTAATGAGGCAGTAGAAAGTGGTGAT TAGGAATCTTTGCCATTAACGAGGCAGTAGAAAGTGGTGAT < 41bp 0.739544865308937 0.532871176218259 NA NA prediction 0.413347378181355 Functional Loss - IQGAP1 ENSG00000140575 CDS Human protein_coding chr15:91009527 chr15:91009526 synonymous SNV . 0 20 hm7G_associated_SNPs_10875 0 0 1 0 1 IQGAP1 chr15:91009501 3'AG 91009501 Downstream 26bp 10264 chr13 25280459 25280459 1 + A G rs141696352 25280460 + 25280440 25280480 41 GGCCCTTCTAGGGATGCCAAGGCCGCTGTGGTGACTGGCAT GGCCCTTCTAGGGATGCCAGGGCCGCTGTGGTGACTGGCAT < 41bp 0.7550194878183 0.548347302156764 NA NA prediction 0.413344371323072 Functional Loss - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25280460 chr13:25280459 nonsynonymous SNV 0.166 2 20 hm7G_associated_SNPs_10876 0 0 0 0 1 ATP12A chr13:25280451 3'AG 25280451 Downstream 9bp 10265 chr16 88552370 88552370 1 + A G rs3751673 88552371 + 88552351 88552391 41 CCTCGGAGACATGGAGGCCAGAGAGGAGGTGCAGTTGGTGG CCTCGGAGACATGGAGGCCGGAGAGGAGGTGCAGTTGGTGG < 41bp 0.762768267144308 0.556102584506161 NA NA prediction 0.413331365276295 Functional Loss - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88552371 chr16:88552370 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_10878 0 0 1 0 2 ZFPM1 chr16:88552347 3'AG 88552347 Downstream 24bp 10266 chr16 88552370 88552370 1 + A G rs3751673 88552371 + 88552351 88552391 41 CCTCGGAGACATGGAGGCCAGAGAGGAGGTGCAGTTGGTGG CCTCGGAGACATGGAGGCCGGAGAGGAGGTGCAGTTGGTGG < 41bp 0.762768267144308 0.556102584506161 NA NA prediction 0.413331365276295 Functional Loss - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88552371 chr16:88552370 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_10878 0 0 1 0 2 ZFPM1 chr16:88552451 5'GT 88552451 Upstream 82bp 10267 chr2 47202164 47202164 1 + A G rs565292434 47202165 + 47202145 47202185 41 CCTCCCGCTTCCGCCTGACAGAGAGGGAGGAGGAAGTGATC CCTCCCGCTTCCGCCTGACGGAGAGGGAGGAGGAAGTGATC < 41bp 0.706662136609532 0.499658733107745 NA NA prediction 0.413324273219064 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47202165 chr2:47202164 synonymous SNV . 0 20 hm7G_associated_SNPs_10880 0 0 1 0 2 TTC7A chr2:47202112 3'AG 47202112 Downstream 53bp 10268 chr2 47202164 47202164 1 + A G rs565292434 47202165 + 47202145 47202185 41 CCTCCCGCTTCCGCCTGACAGAGAGGGAGGAGGAAGTGATC CCTCCCGCTTCCGCCTGACGGAGAGGGAGGAGGAAGTGATC < 41bp 0.706662136609532 0.499658733107745 NA NA prediction 0.413324273219064 Functional Loss - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47202165 chr2:47202164 synonymous SNV . 0 20 hm7G_associated_SNPs_10880 0 0 1 0 2 TTC7A chr2:47202242 5'GT 47202242 Upstream 79bp 10269 chrX 24516994 24516994 1 + T C UCEC 24516995 + 24516975 24517015 41 AATATGAAAATAAGAGCCCTGAGGATCCACAGGTCTTGGAT AATATGAAAATAAGAGCCCCGAGGATCCACAGGTCTTGGAT < 41bp 0.709740585392576 0.503082255618659 NA NA prediction 0.413316659547835 Functional Loss - PDK3 ENSG00000067992 CDS Human protein_coding chrX:24516995 chrX:24516994 synonymous SNV . 0 20 hm7G_associated_SNPs_10881 0 0 1 0 2 PDK3 chrX:24516946 3'AG 24516946 Downstream 49bp 10270 chrX 24516994 24516994 1 + T C UCEC 24516995 + 24516975 24517015 41 AATATGAAAATAAGAGCCCTGAGGATCCACAGGTCTTGGAT AATATGAAAATAAGAGCCCCGAGGATCCACAGGTCTTGGAT < 41bp 0.709740585392576 0.503082255618659 NA NA prediction 0.413316659547835 Functional Loss - PDK3 ENSG00000067992 CDS Human protein_coding chrX:24516995 chrX:24516994 synonymous SNV . 0 20 hm7G_associated_SNPs_10881 0 0 1 0 2 PDK3 chrX:24517017 5'GT 24517017 Upstream 24bp 10271 chr3 38415977 38415977 1 + A G GBM 38415978 + 38415958 38415998 41 CTGGCAGGCATGAGACTGGAGGAAGGTGACATTGCGGTAAG CTGGCAGGCATGAGACTGGGGGAAGGTGACATTGCGGTAAG < 41bp 0.721962209164364 0.515318408789724 NA NA prediction 0.41328760074928 Functional Loss - XYLB ENSG00000093217 CDS Human protein_coding chr3:38415978 chr3:38415977 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10882 0 0 1 0 1 XYLB chr3:38415993 5'GT 38415993 Upstream 17bp 10272 chr2 217012972 217012972 1 + T C COAD 217012973 + 217012953 217012993 41 GCCAAGAAAAAGGATCAAGTGACTGCTCAGGAAATTTTCCA GCCAAGAAAAAGGATCAAGCGACTGCTCAGGAAATTTTCCA < 41bp 0.716209392688892 0.509573214846653 NA NA prediction 0.413272355684478 Functional Loss - XRCC5 ENSG00000079246 CDS Human protein_coding chr2:217012973 chr2:217012972 nonsynonymous SNV 0.936 1 20 hm7G_associated_SNPs_10885 0 0 1 0 1 XRCC5 chr2:217012999 5'GT 217012999 Upstream 28bp 10273 chr11 76892556 76892556 1 + T C UCEC 76892557 + 76892537 76892577 41 CCTGTCAATCACTCAGACATGGTGGACAAGATGTTTGGCTT CCTGTCAATCACTCAGACACGGTGGACAAGATGTTTGGCTT < 41bp 0.724710516452113 0.518095834915385 NA NA prediction 0.413229363073456 Functional Loss - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76892557 chr11:76892556 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10888 0 0 0 0 1 MYO7A chr11:76892635 5'GT 76892635 Upstream 80bp 10274 chr7 27282980 27282980 1 + A G rs368309805 27282981 + 27282961 27283001 41 CTCCGGACAGGGGCAACCCAGTAGCTCGGACACCGAGTCGG CTCCGGACAGGGGCAACCCGGTAGCTCGGACACCGAGTCGG < 41bp 0.706613228559943 0.484383520084832 NA NA prediction 0.413226457119886 Functional Loss - EVX1 ENSG00000106038 CDS Human protein_coding chr7:27282981 chr7:27282980 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_10889 0 0 0 0 2 EVX1 chr7:27283021 5'GT 27283021 Upstream 42bp 10275 chr7 27282980 27282980 1 + A G rs368309805 27282981 + 27282961 27283001 41 CTCCGGACAGGGGCAACCCAGTAGCTCGGACACCGAGTCGG CTCCGGACAGGGGCAACCCGGTAGCTCGGACACCGAGTCGG < 41bp 0.706613228559943 0.484383520084832 NA NA prediction 0.413226457119886 Functional Loss - EVX1 ENSG00000106038 CDS Human protein_coding chr7:27282981 chr7:27282980 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_10889 0 0 0 0 2 EVX1 chr7:27283076 5'GT 27283076 Upstream 97bp 10276 chr7 75611556 75611556 1 + A G KIRC 75611557 + 75611537 75611577 41 TCCAGCATTCGCCAGTACGAGCTTGTGGTCCACACCGACAT TCCAGCATTCGCCAGTACGGGCTTGTGGTCCACACCGACAT < 41bp 0.772392328240302 0.565796491281327 NA NA prediction 0.41319167391795 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75611557 chr7:75611556 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_10894 0 0 1 0 2 POR chr7:75611542 3'AG 75611542 Downstream 15bp 10277 chr7 75611556 75611556 1 + A G KIRC 75611557 + 75611537 75611577 41 TCCAGCATTCGCCAGTACGAGCTTGTGGTCCACACCGACAT TCCAGCATTCGCCAGTACGGGCTTGTGGTCCACACCGACAT < 41bp 0.772392328240302 0.565796491281327 NA NA prediction 0.41319167391795 Functional Loss - POR ENSG00000127948 CDS Human protein_coding chr7:75611557 chr7:75611556 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_10894 0 0 1 0 2 POR chr7:75611640 5'GT 75611640 Upstream 85bp 10278 chr19 7529484 7529484 1 + A G COAD 7529485 + 7529465 7529505 41 AGTCAGCAGCACTGACCCCAGGCCCCGAGACTGGCGAGGCC AGTCAGCAGCACTGACCCCGGGCCCCGAGACTGGCGAGGCC < 41bp 0.70658122074195 0.478575762814998 NA NA prediction 0.413162441483899 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7529485 chr19:7529484 nonsynonymous SNV 0.481 0 20 hm7G_associated_SNPs_10898 0 0 0 0 2 ARHGEF18 chr19:7529446 3'AG 7529446 Downstream 39bp 10279 chr19 7529484 7529484 1 + A G COAD 7529485 + 7529465 7529505 41 AGTCAGCAGCACTGACCCCAGGCCCCGAGACTGGCGAGGCC AGTCAGCAGCACTGACCCCGGGCCCCGAGACTGGCGAGGCC < 41bp 0.70658122074195 0.478575762814998 NA NA prediction 0.413162441483899 Functional Loss - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7529485 chr19:7529484 nonsynonymous SNV 0.481 0 20 hm7G_associated_SNPs_10898 0 0 0 0 2 ARHGEF18 chr19:7529576 5'GT 7529576 Upstream 93bp 10280 chr6 33654212 33654212 1 + T C COAD 33654213 + 33654193 33654233 41 TTGTGACTCACGAGTCCAATGGCATAGACATCATCACCGCA TTGTGACTCACGAGTCCAACGGCATAGACATCATCACCGCA < 41bp 0.706897436657793 0.500316999256107 NA NA prediction 0.413160874803373 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33654213 chr6:33654212 synonymous SNV . 0 20 hm7G_associated_SNPs_10899 0 0 1 0 2 ITPR3 chr6:33654186 3'AG 33654186 Downstream 27bp 10281 chr6 33654212 33654212 1 + T C COAD 33654213 + 33654193 33654233 41 TTGTGACTCACGAGTCCAATGGCATAGACATCATCACCGCA TTGTGACTCACGAGTCCAACGGCATAGACATCATCACCGCA < 41bp 0.706897436657793 0.500316999256107 NA NA prediction 0.413160874803373 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33654213 chr6:33654212 synonymous SNV . 0 20 hm7G_associated_SNPs_10899 0 0 1 0 2 ITPR3 chr6:33654296 5'GT 33654296 Upstream 85bp 10282 chr1 210577901 210577901 1 + T C rs34228541 210577902 + 210577882 210577922 41 CAGCTTCAGCCTGGAGCTCTGCTGGCAGCAGCTGCCTGCTG CAGCTTCAGCCTGGAGCTCCGCTGGCAGCAGCTGCCTGCTG < 41bp 0.727536460274276 0.520963018295239 NA NA prediction 0.413146883958074 Functional Loss - HHAT ENSG00000054392 CDS Human protein_coding chr1:210577902 chr1:210577901 nonsynonymous SNV 0.414 4 20 hm7G_associated_SNPs_10900 0 0 0 0 1 HHAT chr1:210577808 3'AG 210577808 Downstream 94bp 10283 chr1 218480910 218480910 1 + T G KIRP 218480911 + 218480891 218480931 41 AAAGATTTCATCAGTGTTTTGAGAGGGATGGATGGAAGTAC AAAGATTTCATCAGTGTTTGGAGAGGGATGGATGGAAGTAC < 41bp 0.883335318033576 0.676769361791313 NA NA prediction 0.413131912484527 Functional Loss - RRP15 ENSG00000067533 CDS Human protein_coding chr1:218480911 chr1:218480910 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_10901 0 0 1 0 1 RRP15 chr1:218480974 5'GT 218480974 Upstream 65bp 10284 chr2 27302089 27302089 1 + A G COAD 27302090 + 27302070 27302110 41 CCCAGATTGCCCCCCGGCCAGCCAGCCGCCACAGGTAAGAG CCCAGATTGCCCCCCGGCCGGCCAGCCGCCACAGGTAAGAG < 41bp 0.706561403466947 0.47798626362488 NA NA prediction 0.413122806933895 Functional Loss - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302090 chr2:27302089 synonymous SNV . 0 20 hm7G_associated_SNPs_10902 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 15bp 10285 chr12 8288248 8288248 1 + T C STAD 8288249 + 8288229 8288269 41 ACTGCTACTTTATTTCTACTGAATCAGCATCTTGGCAAGAC ACTGCTACTTTATTTCTACCGAATCAGCATCTTGGCAAGAC < 41bp 0.706557677827255 0.497691582250692 NA NA prediction 0.41311535565451 Functional Loss - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8288249 chr12:8288248 synonymous SNV . 0 20 hm7G_associated_SNPs_10903 0 0 0 0 2 CLEC4A chr12:8288181 3'AG 8288181 Downstream 68bp 10286 chr12 8288248 8288248 1 + T C STAD 8288249 + 8288229 8288269 41 ACTGCTACTTTATTTCTACTGAATCAGCATCTTGGCAAGAC ACTGCTACTTTATTTCTACCGAATCAGCATCTTGGCAAGAC < 41bp 0.706557677827255 0.497691582250692 NA NA prediction 0.41311535565451 Functional Loss - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8288249 chr12:8288248 synonymous SNV . 0 20 hm7G_associated_SNPs_10903 0 0 0 0 2 CLEC4A chr12:8288332 5'GT 8288332 Upstream 85bp 10287 chr7 130140359 130140359 1 + T C rs150557584 130140360 + 130140340 130140380 41 CACGACTGATGAACTTCTTTGTATTCTCTCGAGGGTAAGTG CACGACTGATGAACTTCTTCGTATTCTCTCGAGGGTAAGTG < 41bp 0.71531951339103 0.508762524631397 NA NA prediction 0.413113977519266 Functional Loss - MEST ENSG00000106484 CDS Human protein_coding chr7:130140360 chr7:130140359 synonymous SNV . 0 20 hm7G_associated_SNPs_10904 0 0 1 0 1 MEST chr7:130140303 3'AG 130140303 Downstream 57bp 10288 chr4 144381592 144381592 1 + T C UCEC 144381593 + 144381573 144381613 41 GCAGTGACTCACACGACAGTGAAGAGAATTATGTTCCCATG GCAGTGACTCACACGACAGCGAAGAGAATTATGTTCCCATG < 41bp 0.713635375908501 0.507078753753022 NA NA prediction 0.41311324431096 Functional Loss - GAB1 ENSG00000109458 CDS Human protein_coding chr4:144381593 chr4:144381592 synonymous SNV . 0 20 hm7G_associated_SNPs_10905 0 0 0 0 2 GAB1 chr4:144381517 3'AG 144381517 Downstream 76bp 10289 chr4 144381592 144381592 1 + T C UCEC 144381593 + 144381573 144381613 41 GCAGTGACTCACACGACAGTGAAGAGAATTATGTTCCCATG GCAGTGACTCACACGACAGCGAAGAGAATTATGTTCCCATG < 41bp 0.713635375908501 0.507078753753022 NA NA prediction 0.41311324431096 Functional Loss - GAB1 ENSG00000109458 CDS Human protein_coding chr4:144381593 chr4:144381592 synonymous SNV . 0 20 hm7G_associated_SNPs_10905 0 0 0 0 2 GAB1 chr4:144381640 5'GT 144381640 Upstream 49bp 10290 chr9 35558279 35558279 1 + A G BRCA 35558280 + 35558260 35558300 41 GCCGTCCGCGCCGTGCTGGAGGATGGGCTCAAGGCCTTTGT GCCGTCCGCGCCGTGCTGGGGGATGGGCTCAAGGCCTTTGT < 41bp 0.746864321108572 0.540310030848383 NA NA prediction 0.413108580520377 Functional Loss - RUSC2 ENSG00000198853 CDS Human protein_coding chr9:35558280 chr9:35558279 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10906 0 0 1 0 2 RUSC2 chr9:35558194 3'AG 35558194 Downstream 86bp 10291 chr9 35558279 35558279 1 + A G BRCA 35558280 + 35558260 35558300 41 GCCGTCCGCGCCGTGCTGGAGGATGGGCTCAAGGCCTTTGT GCCGTCCGCGCCGTGCTGGGGGATGGGCTCAAGGCCTTTGT < 41bp 0.746864321108572 0.540310030848383 NA NA prediction 0.413108580520377 Functional Loss - RUSC2 ENSG00000198853 CDS Human protein_coding chr9:35558280 chr9:35558279 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10906 0 0 1 0 2 RUSC2 chr9:35558368 5'GT 35558368 Upstream 90bp 10292 chr3 10138124 10138124 1 + T C LIHC 10138125 + 10138105 10138145 41 CAATTGTAGAGAGGCTTTCTGGCTGGGCAATCTAAAAAACC CAATTGTAGAGAGGCTTTCCGGCTGGGCAATCTAAAAAACC < 41bp 0.72015322294064 0.513600544004095 NA NA prediction 0.41310535787309 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10138125 chr3:10138124 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10907 0 0 1 0 1 FANCD2 chr3:10138156 5'GT 10138156 Upstream 33bp 10293 chr22 30769913 30769913 1 + A G UCEC 30769914 + 30769894 30769934 41 AGCCTCCGTCTGTCCCAGGAGCTGCTGCAGAGCCTGCAGAG AGCCTCCGTCTGTCCCAGGGGCTGCTGCAGAGCCTGCAGAG < 41bp 0.759684903734629 0.553142026982591 NA NA prediction 0.413085753504077 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30769914 chr22:30769913 nonsynonymous SNV 0.968 1 20 hm7G_associated_SNPs_10909 0 0 0 0 1 CCDC157 chr22:30769912 3'AG 30769912 Downstream 2bp 10294 chr14 24705295 24705295 1 + T C rs74976241 24705296 + 24705276 24705316 41 ATGGCTACTCTGAACACTTTGTTGAATTTGTAAAAGATGTA ATGGCTACTCTGAACACTTCGTTGAATTTGTAAAAGATGTA < 41bp 0.706978139707701 0.500435471252662 NA NA prediction 0.413085336910078 Functional Loss - GMPR2 ENSG00000100938 CDS Human protein_coding chr14:24705296 chr14:24705295 synonymous SNV . 0 20 hm7G_associated_SNPs_10910 0 0 1 0 1 GMPR2 chr14:24705346 5'GT 24705346 Upstream 52bp 10295 chr5 118500256 118500256 1 + T C KICH 118500257 + 118500237 118500277 41 TCAGTAGCAGAAGAAGAACTGCTGAACATGTTGCCAGCCAT TCAGTAGCAGAAGAAGAACCGCTGAACATGTTGCCAGCCAT < 41bp 0.712390040959809 0.505849711510099 NA NA prediction 0.413080658899421 Functional Loss - DMXL1 ENSG00000172869 CDS Human protein_coding chr5:118500257 chr5:118500256 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_10911 0 0 1 0 1 DMXL1 chr5:118500202 3'AG 118500202 Downstream 55bp 10296 chr18 74270010 74270010 1 + A G rs7233958 74270011 + 74269991 74270031 41 GAGTGACCCCAGGAGTGATAGGGAGCACTGACGGAGTTTCT GAGTGACCCCAGGAGTGATGGGGAGCACTGACGGAGTTTCT < 41bp 0.718392468653939 0.511855252799512 NA NA prediction 0.413074431708854 Functional Loss - LINC00908 ENSG00000263812 CDS Human lincRNA chr18:74270011 chr18:74270010 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10912 0 0 0 0 1 LINC00908 chr18:74269932 3'AG 74269932 Downstream 79bp 10297 chr14 76045905 76045905 1 + T C COAD 76045906 + 76045886 76045926 41 CAGGTTTTCATCCTGGGCATGCCCTCCCGCATCGCTTCCGT CAGGTTTTCATCCTGGGCACGCCCTCCCGCATCGCTTCCGT < 41bp 0.721272123321858 0.514740814729372 NA NA prediction 0.413062617184972 Functional Loss - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76045906 chr14:76045905 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10913 0 0 0 0 1 FLVCR2 chr14:76045984 5'GT 76045984 Upstream 80bp 10298 chr22 23230438 23230438 1 + A G DLBC 23230439 + 23230419 23230459 41 CCTGCGGAGCCTGTGGGGCAGGTAAGGGGCAAGAGATTCCA CCTGCGGAGCCTGTGGGGCGGGTAAGGGGCAAGAGATTCCA < 41bp 0.717623705700036 0.511092982821384 NA NA prediction 0.413061445757305 Functional Loss - IGLL5 ENSG00000254709 CDS Human protein_coding chr22:23230439 chr22:23230438 nonsynonymous SNV 0.282 2 20 hm7G_associated_SNPs_10914 0 0 0 0 1 IGLL5 chr22:23230439 5'GT 23230439 Upstream 2bp 10299 chr22 18070022 18070022 1 + A G rs61741092 18070023 + 18070003 18070043 41 TGGGAGCTGCTCCGCACTCAGGGCCTGGCTGGGCTCTACAG TGGGAGCTGCTCCGCACTCGGGGCCTGGCTGGGCTCTACAG < 41bp 0.77256274389158 0.566033403023124 NA NA prediction 0.413058681736912 Functional Loss - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18070023 chr22:18070022 nonsynonymous SNV 0.966 0 20 hm7G_associated_SNPs_10915 0 0 0 0 1 SLC25A18 chr22:18070067 5'GT 18070067 Upstream 46bp 10300 chr1 110559020 110559020 1 + T C STAD 110559021 + 110559001 110559041 41 TTCCGGCCATGAACGTCAATGATTCTGTTACCAAACAGAAG TTCCGGCCATGAACGTCAACGATTCTGTTACCAAACAGAAG < 41bp 0.73560487853341 0.529081779758744 NA NA prediction 0.413046197549332 Functional Loss - AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110559021 chr1:110559020 synonymous SNV . 0 20 hm7G_associated_SNPs_10916 0 0 1 0 2 AHCYL1 chr1:110558966 3'AG 110558966 Downstream 55bp 10301 chr1 110559020 110559020 1 + T C STAD 110559021 + 110559001 110559041 41 TTCCGGCCATGAACGTCAATGATTCTGTTACCAAACAGAAG TTCCGGCCATGAACGTCAACGATTCTGTTACCAAACAGAAG < 41bp 0.73560487853341 0.529081779758744 NA NA prediction 0.413046197549332 Functional Loss - AHCYL1 ENSG00000168710 CDS Human protein_coding chr1:110559021 chr1:110559020 synonymous SNV . 0 20 hm7G_associated_SNPs_10916 0 0 1 0 2 AHCYL1 chr1:110559082 5'GT 110559082 Upstream 63bp 10302 chr5 170725801 170725801 1 + T G rs141289901 170725802 + 170725782 170725822 41 TCTGTATTCAGAAGAGATGTGGCAGAGGCGTTGCGCAGTGA TCTGTATTCAGAAGAGATGGGGCAGAGGCGTTGCGCAGTGA < 41bp 0.881942226618197 0.675442485595365 NA NA prediction 0.412999482045664 Functional Loss - RANBP17 ENSG00000204764 CDS Human protein_coding chr5:170725802 chr5:170725801 nonsynonymous SNV 0.237 1 20 hm7G_associated_SNPs_10917 0 0 0 0 1 RANBP17 chr5:170725766 3'AG 170725766 Downstream 36bp 10303 chr18 51813729 51813729 1 + T C STAD 51813730 + 51813710 51813750 41 CTGAGAAGCACTATGGTCGTGAGAGTCGTCAGTGCCCTATT CTGAGAAGCACTATGGTCGCGAGAGTCGTCAGTGCCCTATT < 41bp 0.729382046142292 0.522894970368111 NA NA prediction 0.412974151548364 Functional Loss - POLI ENSG00000101751 CDS Human protein_coding chr18:51813730 chr18:51813729 synonymous SNV . 0 20 hm7G_associated_SNPs_10920 0 0 1 0 1 POLI chr18:51813781 5'GT 51813781 Upstream 53bp 10304 chr14 103852399 103852399 1 + T G STAD 103852400 + 103852380 103852420 41 CCCCATTGCCAACGGTGAATGAACGAGACACTGAAAACGTA CCCCATTGCCAACGGTGAAGGAACGAGACACTGAAAACGTA < 41bp 0.706486904522087 0.403005450624961 NA NA prediction 0.412973809044174 Functional Loss - MARK3 ENSG00000075413 CDS Human protein_coding chr14:103852400 chr14:103852399 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_10921 0 0 1 0 1 MARK3 chr14:103852417 5'GT 103852417 Upstream 19bp 10305 chr10 119014848 119014848 1 + T C LUSC 119014849 + 119014829 119014869 41 AAGACGGCTCCGTTCCTGGTGCTGGCCGCCCTGGTACTCTT AAGACGGCTCCGTTCCTGGCGCTGGCCGCCCTGGTACTCTT < 41bp 0.751116875874797 0.544633105413098 NA NA prediction 0.412967540923398 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119014849 chr10:119014848 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_10923 0 0 0 0 2 SLC18A2 chr10:119014788 3'AG 119014788 Downstream 61bp 10306 chr10 119014848 119014848 1 + T C LUSC 119014849 + 119014829 119014869 41 AAGACGGCTCCGTTCCTGGTGCTGGCCGCCCTGGTACTCTT AAGACGGCTCCGTTCCTGGCGCTGGCCGCCCTGGTACTCTT < 41bp 0.751116875874797 0.544633105413098 NA NA prediction 0.412967540923398 Functional Loss - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119014849 chr10:119014848 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_10923 0 0 0 0 2 SLC18A2 chr10:119014877 5'GT 119014877 Upstream 30bp 10307 chr12 109847385 109847385 1 + T C COAD 109847386 + 109847366 109847406 41 TCACCAGGAAAACTGTAATTGGATTACTGGACATCTATGGG TCACCAGGAAAACTGTAATCGGATTACTGGACATCTATGGG < 41bp 0.715150207110972 0.508666644313945 NA NA prediction 0.412967125594055 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109847386 chr12:109847385 synonymous SNV . 0 20 hm7G_associated_SNPs_10924 0 0 0 0 2 MYO1H chr12:109847362 3'AG 109847362 Downstream 24bp 10308 chr12 109847385 109847385 1 + T C COAD 109847386 + 109847366 109847406 41 TCACCAGGAAAACTGTAATTGGATTACTGGACATCTATGGG TCACCAGGAAAACTGTAATCGGATTACTGGACATCTATGGG < 41bp 0.715150207110972 0.508666644313945 NA NA prediction 0.412967125594055 Functional Loss - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109847386 chr12:109847385 synonymous SNV . 0 20 hm7G_associated_SNPs_10924 0 0 0 0 2 MYO1H chr12:109847429 5'GT 109847429 Upstream 45bp 10309 chr6 36922646 36922646 1 + T C COAD 36922647 + 36922627 36922667 41 GAGGAGAAACGTTTGATGGTGGAGCTGCACAACCTCTACCG GAGGAGAAACGTTTGATGGCGGAGCTGCACAACCTCTACCG < 41bp 0.7134678812883 0.507008566401551 NA NA prediction 0.412918629773499 Functional Loss - PI16 ENSG00000164530 CDS Human protein_coding chr6:36922647 chr6:36922646 nonsynonymous SNV 0.782 3 20 hm7G_associated_SNPs_10926 0 0 0 0 1 PI16 chr6:36922707 5'GT 36922707 Upstream 62bp 10310 chr4 99341234 99341234 1 + T C UCEC 99341235 + 99341215 99341255 41 TTTTGAAATTTCTTAAATCTGAAATGCCTCCTGTTCAGTTC TTTTGAAATTTCTTAAATCCGAAATGCCTCCTGTTCAGTTC < 41bp 0.706449875162379 0.49873167231003 NA NA prediction 0.412899750324759 Functional Loss - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99341235 chr4:99341234 synonymous SNV . 0 20 hm7G_associated_SNPs_10927 0 0 1 0 2 RAP1GDS1 chr4:99341170 3'AG 99341170 Downstream 65bp 10311 chr4 99341234 99341234 1 + T C UCEC 99341235 + 99341215 99341255 41 TTTTGAAATTTCTTAAATCTGAAATGCCTCCTGTTCAGTTC TTTTGAAATTTCTTAAATCCGAAATGCCTCCTGTTCAGTTC < 41bp 0.706449875162379 0.49873167231003 NA NA prediction 0.412899750324759 Functional Loss - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99341235 chr4:99341234 synonymous SNV . 0 20 hm7G_associated_SNPs_10927 0 0 1 0 2 RAP1GDS1 chr4:99341295 5'GT 99341295 Upstream 62bp 10312 chr21 47660787 47660787 1 + A G LIHC 47660788 + 47660768 47660808 41 ACTGCGCCAAGAGCTCCTCAGCAGAAGCTCCTCGCATCAGA ACTGCGCCAAGAGCTCCTCGGCAGAAGCTCCTCGCATCAGA < 41bp 0.736519757158035 0.530071474322092 NA NA prediction 0.412896565671885 Functional Loss - MCM3AP ENSG00000160294 CDS Human protein_coding chr21:47660788 chr21:47660787 synonymous SNV . 0 20 hm7G_associated_SNPs_10928 0 0 1 2 1 MCM3AP chr21:47660748 3'AG 47660748 Downstream 40bp 10313 chr3 148847668 148847668 1 + A G rs199663930 148847669 + 148847649 148847689 41 GCCGGCCAGGAGCTGTGCCAGCCGCGGTGCGCCTTCTCCAC GCCGGCCAGGAGCTGTGCCGGCCGCGGTGCGCCTTCTCCAC < 41bp 0.706439564226368 0.492551342166099 NA NA prediction 0.412879128452736 Functional Loss - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148847669 chr3:148847668 nonsynonymous SNV 0.946 0 20 hm7G_associated_SNPs_10929 1 0 1 0 1 HPS3 chr3:148847727 5'GT 148847727 Upstream 60bp 10314 chr22 38328618 38328618 1 + A G rs200404671 38328619 + 38328599 38328639 41 GGAGAGATGGATACCATTGAGCGCCGGCTGGATGCCCTGGA GGAGAGATGGATACCATTGGGCGCCGGCTGGATGCCCTGGA < 41bp 0.743335686495638 0.536900336817448 NA NA prediction 0.412870699356379 Functional Loss - MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38328619 chr22:38328618 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10930 0 0 1 0 2 MICALL1 chr22:38328560 3'AG 38328560 Downstream 59bp 10315 chr22 38328618 38328618 1 + A G rs200404671 38328619 + 38328599 38328639 41 GGAGAGATGGATACCATTGAGCGCCGGCTGGATGCCCTGGA GGAGAGATGGATACCATTGGGCGCCGGCTGGATGCCCTGGA < 41bp 0.743335686495638 0.536900336817448 NA NA prediction 0.412870699356379 Functional Loss - MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38328619 chr22:38328618 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_10930 0 0 1 0 2 MICALL1 chr22:38328686 5'GT 38328686 Upstream 69bp 10316 chr7 128588282 128588282 1 + A G BLCA 128588283 + 128588263 128588303 41 GAGCTCATCCTGTTCCAAAAGGGCCAGACCAACACCCCACC GAGCTCATCCTGTTCCAAAGGGGCCAGACCAACACCCCACC < 41bp 0.70640771386603 0.498395418842376 NA NA prediction 0.412815427732061 Functional Loss - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128588283 chr7:128588282 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10931 0 0 0 0 1 IRF5 chr7:128588264 3'AG 128588264 Downstream 19bp 10317 chr2 220149473 220149473 1 + A G COAD 220149474 + 220149454 220149494 41 TGCCTCATGCCCCTTGGACAGCGACCTCTCTGAGGATGAGG TGCCTCATGCCCCTTGGACGGCGACCTCTCTGAGGATGAGG < 41bp 0.752948579239612 0.546572738266846 NA NA prediction 0.412751681945533 Functional Loss - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220149474 chr2:220149473 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_10934 0 0 1 0 1 DNAJB2 chr2:220149557 5'GT 220149557 Upstream 85bp 10318 chr7 36327348 36327348 1 + T C OV 36327349 + 36327329 36327369 41 CACAGTGATGGCCACCGGTTGGCGAGCTTTGCACAGACCCT CACAGTGATGGCCACCGGTCGGCGAGCTTTGCACAGACCCT < 41bp 0.721595978527002 0.51522070370586 NA NA prediction 0.412750549642285 Functional Loss - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36327349 chr7:36327348 nonsynonymous SNV 0.019 1 20 hm7G_associated_SNPs_10936 0 0 1 0 1 EEPD1 chr7:36327386 5'GT 36327386 Upstream 39bp 10319 chr20 13134713 13134713 1 + T C COAD 13134714 + 13134694 13134734 41 AGACAAAGACTGCAGGAAATGGGATTCATTATCTATGGCAA AGACAAAGACTGCAGGAAACGGGATTCATTATCTATGGCAA < 41bp 0.709594017591807 0.503219579465541 NA NA prediction 0.412748876252531 Functional Loss - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13134714 chr20:13134713 nonsynonymous SNV 0.904 3 20 hm7G_associated_SNPs_10937 0 0 0 0 1 SPTLC3 chr20:13134650 3'AG 13134650 Downstream 64bp 10320 chr2 217340155 217340155 1 + A G SARC 217340156 + 217340136 217340176 41 GACCTGGTGGTGTTTGCTGAGCTGTTTTGGAACCCAGGGGT GACCTGGTGGTGTTTGCTGGGCTGTTTTGGAACCCAGGGGT < 41bp 0.716173667857277 0.509812326323654 NA NA prediction 0.412722683067246 Functional Loss - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217340156 chr2:217340155 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_10940 0 0 0 1 1 SMARCAL1 chr2:217340174 5'GT 217340174 Upstream 20bp 10321 chr3 10108908 10108908 1 + T C GBM 10108909 + 10108889 10108929 41 GCAGATTGTAAATGCCTTCTGCCAGGAAACATCACCTGAGA GCAGATTGTAAATGCCTTCCGCCAGGAAACATCACCTGAGA < 41bp 0.706327457694861 0.496602494323329 NA NA prediction 0.412654915389723 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10108909 chr3:10108908 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_10943 0 0 1 1 2 FANCD2 chr3:10108893 3'AG 10108893 Downstream 16bp 10322 chr3 10108908 10108908 1 + T C GBM 10108909 + 10108889 10108929 41 GCAGATTGTAAATGCCTTCTGCCAGGAAACATCACCTGAGA GCAGATTGTAAATGCCTTCCGCCAGGAAACATCACCTGAGA < 41bp 0.706327457694861 0.496602494323329 NA NA prediction 0.412654915389723 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10108909 chr3:10108908 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_10943 0 0 1 1 2 FANCD2 chr3:10109001 5'GT 10109001 Upstream 94bp 10323 chr11 62553790 62553790 1 + T C UCEC 62553791 + 62553771 62553811 41 TGGACAAACTTGCAGGCTGTGCTGGATGATTATTCAGTATC TGGACAAACTTGCAGGCTGCGCTGGATGATTATTCAGTATC < 41bp 0.706320470149812 0.496945029099357 NA NA prediction 0.412640940299624 Functional Loss - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62553791 chr11:62553790 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10944 0 0 0 0 2 TAF6L chr11:62553732 3'AG 62553732 Downstream 59bp 10324 chr11 62553790 62553790 1 + T C UCEC 62553791 + 62553771 62553811 41 TGGACAAACTTGCAGGCTGTGCTGGATGATTATTCAGTATC TGGACAAACTTGCAGGCTGCGCTGGATGATTATTCAGTATC < 41bp 0.706320470149812 0.496945029099357 NA NA prediction 0.412640940299624 Functional Loss - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62553791 chr11:62553790 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10944 0 0 0 0 2 TAF6L chr11:62553860 5'GT 62553860 Upstream 71bp 10325 chr1 25890189 25890189 1 + A G rs28969504 25890190 + 25890170 25890210 41 TGCTGGACTTAGAGGAGACAGCTAAGGCCCCGCTGTCCACG TGCTGGACTTAGAGGAGACGGCTAAGGCCCCGCTGTCCACG < 41bp 0.772051162121488 0.565754128140093 NA NA prediction 0.412594067962791 Functional Loss - LDLRAP1 ENSG00000157978 CDS Human protein_coding chr1:25890190 chr1:25890189 synonymous SNV . 0 20 hm7G_associated_SNPs_10946 2 0 1 0 2 LDLRAP1 chr1:25890152 3'AG 25890152 Downstream 38bp 10326 chr1 25890189 25890189 1 + A G rs28969504 25890190 + 25890170 25890210 41 TGCTGGACTTAGAGGAGACAGCTAAGGCCCCGCTGTCCACG TGCTGGACTTAGAGGAGACGGCTAAGGCCCCGCTGTCCACG < 41bp 0.772051162121488 0.565754128140093 NA NA prediction 0.412594067962791 Functional Loss - LDLRAP1 ENSG00000157978 CDS Human protein_coding chr1:25890190 chr1:25890189 synonymous SNV . 0 20 hm7G_associated_SNPs_10946 2 0 1 0 2 LDLRAP1 chr1:25890282 5'GT 25890282 Upstream 94bp 10327 chr19 45563703 45563703 1 + A G LIHC 45563704 + 45563684 45563724 41 AAGCATGCCAAGGCTCTTGAGGAGGAGAAGGCCATGTACTC AAGCATGCCAAGGCTCTTGGGGAGGAGAAGGCCATGTACTC < 41bp 0.759392197425416 0.553104493355645 NA NA prediction 0.412575408139542 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45563704 chr19:45563703 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10947 0 0 1 1 2 CLASRP chr19:45563647 3'AG 45563647 Downstream 57bp 10328 chr19 45563703 45563703 1 + A G LIHC 45563704 + 45563684 45563724 41 AAGCATGCCAAGGCTCTTGAGGAGGAGAAGGCCATGTACTC AAGCATGCCAAGGCTCTTGGGGAGGAGAAGGCCATGTACTC < 41bp 0.759392197425416 0.553104493355645 NA NA prediction 0.412575408139542 Functional Loss - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45563704 chr19:45563703 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10947 0 0 1 1 2 CLASRP chr19:45563725 5'GT 45563725 Upstream 23bp 10329 chr5 126791128 126791128 1 + T C LUAD 126791129 + 126791109 126791149 41 TGAATATAATTCAAGTAACTGCTCCCTAAGCAGTTCTGAGA TGAATATAATTCAAGTAACCGCTCCCTAAGCAGTTCTGAGA < 41bp 0.724284888447508 0.518000135715854 NA NA prediction 0.412569505463307 Functional Loss - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126791129 chr5:126791128 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_10949 0 0 0 0 1 MEGF10 chr5:126791093 3'AG 126791093 Downstream 36bp 10330 chr16 5135685 5135685 1 - A C UCEC 5135684 - 5135664 5135704 41 CCTCGTCATGAGCAGAAACTGTTTCCCTACGAAGAGCACTT CCTCGTCATGAGCAGAAACGGTTTCCCTACGAAGAGCACTT < 41bp 0.706271203009808 0.386990086876678 NA NA prediction 0.412542406019615 Functional Loss - EEF2KMT ENSG00000118894 CDS Human protein_coding chr16:5135684 chr16:5135685 nonsynonymous SNV 0.074 1 20 hm7G_associated_SNPs_10952 0 0 1 0 1 EEF2KMT chr16:5135733 3'AG 5135733 Downstream 49bp 10331 chr14 78325507 78325507 1 + T C STAD 78325508 + 78325488 78325528 41 GGCCAGCACCTGGGGGCTCTGGACTACCTGTTGCCAGAGGA GGCCAGCACCTGGGGGCTCCGGACTACCTGTTGCCAGAGGA < 41bp 0.736820193490962 0.530555346509683 NA NA prediction 0.412529693962558 Functional Loss - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78325508 chr14:78325507 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_10953 0 0 1 2 1 ADCK1 chr14:78325419 3'AG 78325419 Downstream 89bp 10332 chr15 66813414 66813414 1 + T C LGG 66813415 + 66813395 66813435 41 CCAAAGGCTTTGCCCAGTATGAGCTCTTTAAGTCCTCTGCC CCAAAGGCTTTGCCCAGTACGAGCTCTTTAAGTCCTCTGCC < 41bp 0.706263995607779 0.495991788974203 NA NA prediction 0.412527991215558 Functional Loss - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66813415 chr15:66813414 synonymous SNV . 0 20 hm7G_associated_SNPs_10954 0 0 1 0 1 ZWILCH chr15:66813388 3'AG 66813388 Downstream 27bp 10333 chr2 187519407 187519407 1 + T C UCEC 187519408 + 187519388 187519428 41 GGTTCTGCTTAAAGGCAGATGGCAAAGGAGTACTTCCCAGG GGTTCTGCTTAAAGGCAGACGGCAAAGGAGTACTTCCCAGG < 41bp 0.709673330950899 0.503413121312741 NA NA prediction 0.412520419276317 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187519408 chr2:187519407 synonymous SNV . 0 20 hm7G_associated_SNPs_10955 0 0 1 0 2 ITGAV chr2:187519377 3'AG 187519377 Downstream 31bp 10334 chr2 187519407 187519407 1 + T C UCEC 187519408 + 187519388 187519428 41 GGTTCTGCTTAAAGGCAGATGGCAAAGGAGTACTTCCCAGG GGTTCTGCTTAAAGGCAGACGGCAAAGGAGTACTTCCCAGG < 41bp 0.709673330950899 0.503413121312741 NA NA prediction 0.412520419276317 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187519408 chr2:187519407 synonymous SNV . 0 20 hm7G_associated_SNPs_10955 0 0 1 0 2 ITGAV chr2:187519435 5'GT 187519435 Upstream 29bp 10335 chr19 45316592 45316592 1 + A G STAD 45316593 + 45316573 45316613 41 CGCCTGGAGGTGCCCGTAGAGATGAACCCAGGTGAGCAGCG CGCCTGGAGGTGCCCGTAGGGATGAACCCAGGTGAGCAGCG < 41bp 0.713638772834316 0.507401319841288 NA NA prediction 0.412474905986056 Functional Loss - BCAM ENSG00000187244 CDS Human protein_coding chr19:45316593 chr19:45316592 nonsynonymous SNV 0.798 1 20 hm7G_associated_SNPs_10958 0 0 0 0 2 BCAM chr19:45316507 3'AG 45316507 Downstream 86bp 10336 chr19 45316592 45316592 1 + A G STAD 45316593 + 45316573 45316613 41 CGCCTGGAGGTGCCCGTAGAGATGAACCCAGGTGAGCAGCG CGCCTGGAGGTGCCCGTAGGGATGAACCCAGGTGAGCAGCG < 41bp 0.713638772834316 0.507401319841288 NA NA prediction 0.412474905986056 Functional Loss - BCAM ENSG00000187244 CDS Human protein_coding chr19:45316593 chr19:45316592 nonsynonymous SNV 0.798 1 20 hm7G_associated_SNPs_10958 0 0 0 0 2 BCAM chr19:45316603 5'GT 45316603 Upstream 12bp 10337 chr5 72866454 72866454 1 + T C rs145488096 72866455 + 72866435 72866475 41 TGTTTGATGCACGAACGAGTGAGAGTGTTCTCTCCGTTGAG TGTTTGATGCACGAACGAGCGAGAGTGTTCTCTCCGTTGAG < 41bp 0.719383749964451 0.513158179297633 NA NA prediction 0.412451141333635 Functional Loss - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72866455 chr5:72866454 synonymous SNV . 0 20 hm7G_associated_SNPs_10959 0 0 1 0 2 UTP15 chr5:72866411 3'AG 72866411 Downstream 44bp 10338 chr5 72866454 72866454 1 + T C rs145488096 72866455 + 72866435 72866475 41 TGTTTGATGCACGAACGAGTGAGAGTGTTCTCTCCGTTGAG TGTTTGATGCACGAACGAGCGAGAGTGTTCTCTCCGTTGAG < 41bp 0.719383749964451 0.513158179297633 NA NA prediction 0.412451141333635 Functional Loss - UTP15 ENSG00000164338 CDS Human protein_coding chr5:72866455 chr5:72866454 synonymous SNV . 0 20 hm7G_associated_SNPs_10959 0 0 1 0 2 UTP15 chr5:72866536 5'GT 72866536 Upstream 83bp 10339 chr16 81965211 81965211 1 + T C LUAD 81965212 + 81965192 81965232 41 ACAGGGTGGAGGAGCTCTTTGAGTGGTTTCAGAGCATCCGA ACAGGGTGGAGGAGCTCTTCGAGTGGTTTCAGAGCATCCGA < 41bp 0.706202186487392 0.492052965266139 NA NA prediction 0.412404372974783 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81965212 chr16:81965211 synonymous SNV . 0 20 hm7G_associated_SNPs_10961 0 0 0 0 1 PLCG2 chr16:81965259 5'GT 81965259 Upstream 49bp 10340 chr19 41312467 41312467 1 + T C GBM 41312468 + 41312448 41312488 41 CATCCCTGCCAGGCCATGGTGGCGTGTTACCCAGGCAACGG CATCCCTGCCAGGCCATGGCGGCGTGTTACCCAGGCAACGG < 41bp 0.706199498735159 0.495940550546225 NA NA prediction 0.412398997470317 Functional Loss - EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41312468 chr19:41312467 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_10962 0 0 1 0 1 EGLN2 chr19:41312460 3'AG 41312460 Downstream 8bp 10341 chr10 51827887 51827887 1 + A G STAD 51827888 + 51827868 51827908 41 AACCGGACGACCCCCGACCAGGAGCTGGCGCCAGCGTCGGA AACCGGACGACCCCCGACCGGGAGCTGGCGCCAGCGTCGGA < 41bp 0.761899164962616 0.555711186215872 NA NA prediction 0.412375957493487 Functional Loss - WASHC2A ENSG00000099290 CDS Human protein_coding chr10:51827888 chr10:51827887 nonsynonymous SNV 0.100 0 20 hm7G_associated_SNPs_10963 0 0 1 0 1 WASHC2A chr10:51827865 3'AG 51827865 Downstream 23bp 10342 chr9 129977097 129977097 1 + T C rs16929700 129977098 + 129977078 129977118 41 GGCACAAGCATTTGGATGATGCATGTAAAAGCAACAGGCCT GGCACAAGCATTTGGATGACGCATGTAAAAGCAACAGGCCT < 41bp 0.707259374310519 0.501071704578082 NA NA prediction 0.412375339464875 Functional Loss - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129977098 chr9:129977097 synonymous SNV . 0 20 hm7G_associated_SNPs_10964 0 0 0 0 2 RALGPS1 chr9:129977030 3'AG 129977030 Downstream 68bp 10343 chr9 129977097 129977097 1 + T C rs16929700 129977098 + 129977078 129977118 41 GGCACAAGCATTTGGATGATGCATGTAAAAGCAACAGGCCT GGCACAAGCATTTGGATGACGCATGTAAAAGCAACAGGCCT < 41bp 0.707259374310519 0.501071704578082 NA NA prediction 0.412375339464875 Functional Loss - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129977098 chr9:129977097 synonymous SNV . 0 20 hm7G_associated_SNPs_10964 0 0 0 0 2 RALGPS1 chr9:129977121 5'GT 129977121 Upstream 25bp 10344 chr9 115923804 115923804 1 + T C UCEC 115923805 + 115923785 115923825 41 ACAGGCATGGCCCTTTCGGTGTTGGTGCTCCTGCTTCTGGC ACAGGCATGGCCCTTTCGGCGTTGGTGCTCCTGCTTCTGGC < 41bp 0.7081506445431 0.50196399717834 NA NA prediction 0.412373294729519 Functional Loss - SLC31A2 ENSG00000136867 CDS Human protein_coding chr9:115923805 chr9:115923804 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_10965 0 0 0 0 1 SLC31A2 chr9:115923789 3'AG 115923789 Downstream 16bp 10345 chr3 47378043 47378043 1 + T C BLCA 47378044 + 47378024 47378064 41 GGTGATTCCCTGAATGTGGTGGAAGTGTTCGACCCCATTGC GGTGATTCCCTGAATGTGGCGGAAGTGTTCGACCCCATTGC < 41bp 0.73289658393807 0.526714369725343 NA NA prediction 0.412364428425453 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47378044 chr3:47378043 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10966 0 0 1 0 2 KLHL18 chr3:47378010 3'AG 47378010 Downstream 34bp 10346 chr3 47378043 47378043 1 + T C BLCA 47378044 + 47378024 47378064 41 GGTGATTCCCTGAATGTGGTGGAAGTGTTCGACCCCATTGC GGTGATTCCCTGAATGTGGCGGAAGTGTTCGACCCCATTGC < 41bp 0.73289658393807 0.526714369725343 NA NA prediction 0.412364428425453 Functional Loss - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47378044 chr3:47378043 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_10966 0 0 1 0 2 KLHL18 chr3:47378025 3'AG 47378025 Downstream 19bp 10347 chr6 111585070 111585070 1 + T C rs73532762 111585071 + 111585051 111585091 41 CCACCGTTGGTCTTTATCTTGTTCCTTTTTGCAAGACAGCA CCACCGTTGGTCTTTATCTCGTTCCTTTTTGCAAGACAGCA < 41bp 0.713791743007969 0.507613017016395 NA NA prediction 0.412357451983149 Functional Loss - MFSD4B ENSG00000173214 CDS Human protein_coding chr6:111585071 chr6:111585070 synonymous SNV . 0 20 hm7G_associated_SNPs_10968 0 0 1 0 2 MFSD4B chr6:111585033 3'AG 111585033 Downstream 38bp 10348 chr6 111585070 111585070 1 + T C rs73532762 111585071 + 111585051 111585091 41 CCACCGTTGGTCTTTATCTTGTTCCTTTTTGCAAGACAGCA CCACCGTTGGTCTTTATCTCGTTCCTTTTTGCAAGACAGCA < 41bp 0.713791743007969 0.507613017016395 NA NA prediction 0.412357451983149 Functional Loss - MFSD4B ENSG00000173214 CDS Human protein_coding chr6:111585071 chr6:111585070 synonymous SNV . 0 20 hm7G_associated_SNPs_10968 0 0 1 0 2 MFSD4B chr6:111585149 5'GT 111585149 Upstream 80bp 10349 chr2 234178692 234178692 1 + A G COAD 234178693 + 234178673 234178713 41 GAGCTTGCAGAAGCAGCAAAGGAACCTCTACCAGTCGAACA GAGCTTGCAGAAGCAGCAAGGGAACCTCTACCAGTCGAACA < 41bp 0.707370504754191 0.501201751797905 NA NA prediction 0.412337505912571 Functional Loss - ATG16L1 ENSG00000085978 CDS Human protein_coding chr2:234178693 chr2:234178692 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10969 0 0 1 0 2 ATG16L1 chr2:234178648 3'AG 234178648 Downstream 45bp 10350 chr2 234178692 234178692 1 + A G COAD 234178693 + 234178673 234178713 41 GAGCTTGCAGAAGCAGCAAAGGAACCTCTACCAGTCGAACA GAGCTTGCAGAAGCAGCAAGGGAACCTCTACCAGTCGAACA < 41bp 0.707370504754191 0.501201751797905 NA NA prediction 0.412337505912571 Functional Loss - ATG16L1 ENSG00000085978 CDS Human protein_coding chr2:234178693 chr2:234178692 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_10969 0 0 1 0 2 ATG16L1 chr2:234178713 5'GT 234178713 Upstream 22bp 10351 chr14 62204815 62204815 1 + T G UCEC 62204816 + 62204796 62204836 41 TCCCCACAGACACAGAAACTGATGACCAGCAACTTGAGGAA TCCCCACAGACACAGAAACGGATGACCAGCAACTTGAGGAA < 41bp 0.90045731040949 0.694300317140546 NA NA prediction 0.412313986537888 Functional Loss - HIF1A ENSG00000100644 CDS Human protein_coding chr14:62204816 chr14:62204815 synonymous SNV . 0 20 hm7G_associated_SNPs_10970 0 0 1 0 1 HIF1A chr14:62204805 3'AG 62204805 Downstream 11bp 10352 chr2 179253817 179253817 1 + T C STAD 179253818 + 179253798 179253838 41 GAAGATGGATAGAACATTATGGAGAAGTAACCATCAGAAAT GAAGATGGATAGAACATTACGGAGAAGTAACCATCAGAAAT < 41bp 0.717158693101689 0.51100603983683 NA NA prediction 0.412305306529719 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179253818 chr2:179253817 synonymous SNV . 0 20 hm7G_associated_SNPs_10971 0 0 0 0 2 OSBPL6 chr2:179253736 3'AG 179253736 Downstream 82bp 10353 chr2 179253817 179253817 1 + T C STAD 179253818 + 179253798 179253838 41 GAAGATGGATAGAACATTATGGAGAAGTAACCATCAGAAAT GAAGATGGATAGAACATTACGGAGAAGTAACCATCAGAAAT < 41bp 0.717158693101689 0.51100603983683 NA NA prediction 0.412305306529719 Functional Loss - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179253818 chr2:179253817 synonymous SNV . 0 20 hm7G_associated_SNPs_10971 0 0 0 0 2 OSBPL6 chr2:179253880 5'GT 179253880 Upstream 64bp 10354 chr9 117070019 117070019 1 + T C ACC 117070020 + 117070000 117070040 41 TCTCCTGCAACTTCACTCATGGTGGACAGACGTGTCTCAAG TCTCCTGCAACTTCACTCACGGTGGACAGACGTGTCTCAAG < 41bp 0.710582955395988 0.504431206525559 NA NA prediction 0.412303497740859 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117070020 chr9:117070019 synonymous SNV . 0 20 hm7G_associated_SNPs_10972 0 0 1 0 2 COL27A1 chr9:117069949 3'AG 117069949 Downstream 71bp 10355 chr9 117070019 117070019 1 + T C ACC 117070020 + 117070000 117070040 41 TCTCCTGCAACTTCACTCATGGTGGACAGACGTGTCTCAAG TCTCCTGCAACTTCACTCACGGTGGACAGACGTGTCTCAAG < 41bp 0.710582955395988 0.504431206525559 NA NA prediction 0.412303497740859 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117070020 chr9:117070019 synonymous SNV . 0 20 hm7G_associated_SNPs_10972 0 0 1 0 2 COL27A1 chr9:117070058 5'GT 117070058 Upstream 40bp 10356 chr1 227171866 227171866 1 + T C STAD 227171867 + 227171847 227171887 41 CTCTGCAGCCCACATGTGCTGACCACAGAGCTGGTGTCTGG CTCTGCAGCCCACATGTGCCGACCACAGAGCTGGTGTCTGG < 41bp 0.738741585999068 0.532596817811096 NA NA prediction 0.412289536375944 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171867 chr1:227171866 nonsynonymous SNV 0.578 4 20 hm7G_associated_SNPs_10973 0 0 1 0 2 COQ8A chr1:227171795 3'AG 227171795 Downstream 72bp 10357 chr1 227171866 227171866 1 + T C STAD 227171867 + 227171847 227171887 41 CTCTGCAGCCCACATGTGCTGACCACAGAGCTGGTGTCTGG CTCTGCAGCCCACATGTGCCGACCACAGAGCTGGTGTCTGG < 41bp 0.738741585999068 0.532596817811096 NA NA prediction 0.412289536375944 Functional Loss - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171867 chr1:227171866 nonsynonymous SNV 0.578 4 20 hm7G_associated_SNPs_10973 0 0 1 0 2 COQ8A chr1:227171936 5'GT 227171936 Upstream 71bp 10358 chrX 117796715 117796715 1 + T G UCEC 117796716 + 117796696 117796736 41 ATAGATGAAGAAGGAGCAATGAAAGAAGATGCTGGGATGAT ATAGATGAAGAAGGAGCAAGGAAAGAAGATGCTGGGATGAT < 41bp 0.885979343289808 0.679837278251403 NA NA prediction 0.41228413007681 Functional Loss - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117796716 chrX:117796715 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10974 0 0 0 0 2 DOCK11 chrX:117796649 3'AG 117796649 Downstream 67bp 10359 chrX 117796715 117796715 1 + T G UCEC 117796716 + 117796696 117796736 41 ATAGATGAAGAAGGAGCAATGAAAGAAGATGCTGGGATGAT ATAGATGAAGAAGGAGCAAGGAAAGAAGATGCTGGGATGAT < 41bp 0.885979343289808 0.679837278251403 NA NA prediction 0.41228413007681 Functional Loss - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117796716 chrX:117796715 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10974 0 0 0 0 2 DOCK11 chrX:117796755 5'GT 117796755 Upstream 41bp 10360 chr3 137942279 137942279 1 + T G STAD 137942280 + 137942260 137942300 41 CAAGCACAGAGCTGAAAACTGAATGTGCAGTGGTGTTGGGA CAAGCACAGAGCTGAAAACGGAATGTGCAGTGGTGTTGGGA < 41bp 0.900797210701764 0.694657507363441 NA NA prediction 0.412279406676648 Functional Loss - ARMC8 ENSG00000114098 CDS Human protein_coding chr3:137942280 chr3:137942279 synonymous SNV . 0 20 hm7G_associated_SNPs_10975 0 0 1 0 2 ARMC8 chr3:137942231 3'AG 137942231 Downstream 49bp 10361 chr3 137942279 137942279 1 + T G STAD 137942280 + 137942260 137942300 41 CAAGCACAGAGCTGAAAACTGAATGTGCAGTGGTGTTGGGA CAAGCACAGAGCTGAAAACGGAATGTGCAGTGGTGTTGGGA < 41bp 0.900797210701764 0.694657507363441 NA NA prediction 0.412279406676648 Functional Loss - ARMC8 ENSG00000114098 CDS Human protein_coding chr3:137942280 chr3:137942279 synonymous SNV . 0 20 hm7G_associated_SNPs_10975 0 0 1 0 2 ARMC8 chr3:137942373 5'GT 137942373 Upstream 95bp 10362 chr10 75672776 75672776 1 + T G UCEC 75672777 + 75672757 75672797 41 CCTGCCTGCCCTGGAACTCTGCCACTGTCCTTCAGCAAACG CCTGCCTGCCCTGGAACTCGGCCACTGTCCTTCAGCAAACG < 41bp 0.706136474776869 0.348589831054799 NA NA prediction 0.412272949553738 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75672777 chr10:75672776 synonymous SNV . 0 20 hm7G_associated_SNPs_10976 0 0 0 0 2 PLAU chr10:75672682 3'AG 75672682 Downstream 95bp 10363 chr10 75672776 75672776 1 + T G UCEC 75672777 + 75672757 75672797 41 CCTGCCTGCCCTGGAACTCTGCCACTGTCCTTCAGCAAACG CCTGCCTGCCCTGGAACTCGGCCACTGTCCTTCAGCAAACG < 41bp 0.706136474776869 0.348589831054799 NA NA prediction 0.412272949553738 Functional Loss - PLAU ENSG00000122861 CDS Human protein_coding chr10:75672777 chr10:75672776 synonymous SNV . 0 20 hm7G_associated_SNPs_10976 0 0 0 0 2 PLAU chr10:75672856 5'GT 75672856 Upstream 81bp 10364 chr14 50246318 50246318 1 + A G LUSC 50246319 + 50246299 50246339 41 TGTGCCTCTAATAGGGTAAAGCACCTTCACCTCGTGCTGCC TGTGCCTCTAATAGGGTAAGGCACCTTCACCTCGTGCTGCC < 41bp 0.719780367348201 0.513646748273971 NA NA prediction 0.41226723814846 Functional Loss - KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50246319 chr14:50246318 synonymous SNV . 0 20 hm7G_associated_SNPs_10977 0 0 1 0 1 KLHDC2 chr14:50246393 5'GT 50246393 Upstream 76bp 10365 chr8 145693113 145693113 1 + A G LUSC 145693114 + 145693094 145693134 41 CAGCTGGAGGAGCTGAAGCAGCAGCTGGAACAGCAGGAGGA CAGCTGGAGGAGCTGAAGCGGCAGCTGGAACAGCAGGAGGA < 41bp 0.767489245903826 0.561378644627052 NA NA prediction 0.412221202553547 Functional Loss - KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145693114 chr8:145693113 nonsynonymous SNV 0.159 1 20 hm7G_associated_SNPs_10978 0 0 1 0 2 KIFC2 chr8:145693097 3'AG 145693097 Downstream 17bp 10366 chr8 145693113 145693113 1 + A G LUSC 145693114 + 145693094 145693134 41 CAGCTGGAGGAGCTGAAGCAGCAGCTGGAACAGCAGGAGGA CAGCTGGAGGAGCTGAAGCGGCAGCTGGAACAGCAGGAGGA < 41bp 0.767489245903826 0.561378644627052 NA NA prediction 0.412221202553547 Functional Loss - KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145693114 chr8:145693113 nonsynonymous SNV 0.159 1 20 hm7G_associated_SNPs_10978 0 0 1 0 2 KIFC2 chr8:145693162 5'GT 145693162 Upstream 50bp 10367 chr20 60856148 60856148 1 + T C GBM 60856149 + 60856129 60856169 41 CACCTGGACCAACCCCACCTGCTGCGTCCACAACGTCATCA CACCTGGACCAACCCCACCCGCTGCGTCCACAACGTCATCA < 41bp 0.760165063451541 0.554067073531806 NA NA prediction 0.41219597983947 Functional Loss - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60856149 chr20:60856148 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_10980 0 0 1 0 2 OSBPL2 chr20:60856114 3'AG 60856114 Downstream 35bp 10368 chr20 60856148 60856148 1 + T C GBM 60856149 + 60856129 60856169 41 CACCTGGACCAACCCCACCTGCTGCGTCCACAACGTCATCA CACCTGGACCAACCCCACCCGCTGCGTCCACAACGTCATCA < 41bp 0.760165063451541 0.554067073531806 NA NA prediction 0.41219597983947 Functional Loss - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60856149 chr20:60856148 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_10980 0 0 1 0 2 OSBPL2 chr20:60856221 5'GT 60856221 Upstream 74bp 10369 chr11 124749788 124749788 1 + A G LIHC 124749789 + 124749769 124749809 41 GAGCGGGAGCGCAGTGGGGAGAGGAAAGCGGTCCAGGCCGT GAGCGGGAGCGCAGTGGGGGGAGGAAAGCGGTCCAGGCCGT < 41bp 0.717434330792734 0.511338758098114 NA NA prediction 0.41219114538924 Functional Loss - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124749789 chr11:124749788 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_10981 0 0 0 0 1 ROBO3 chr11:124749844 5'GT 124749844 Upstream 57bp 10370 chr21 42807927 42807927 1 + T G COAD 42807928 + 42807908 42807948 41 AGCTCCGTGTTGGAGGCACTGTCAGGAGTTGCCCTTCCCAG AGCTCCGTGTTGGAGGCACGGTCAGGAGTTGCCCTTCCCAG < 41bp 0.70606468673683 0.363599215715097 NA NA prediction 0.412129373473659 Functional Loss - MX1 ENSG00000157601 CDS Human protein_coding chr21:42807928 chr21:42807927 nonsynonymous SNV 0.300 5 20 hm7G_associated_SNPs_10984 0 0 0 0 1 MX1 chr21:42807956 5'GT 42807956 Upstream 30bp 10371 chr12 104461817 104461817 1 + T C GBM 104461818 + 104461798 104461838 41 GACATAGCTTCTCTTTATATGGTAACAAATGCTATTTGTTT GACATAGCTTCTCTTTATACGGTAACAAATGCTATTTGTTT < 41bp 0.707747717639385 0.5016880695125 NA NA prediction 0.412119296253771 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104461818 chr12:104461817 synonymous SNV . 0 20 hm7G_associated_SNPs_10985 0 0 0 1 2 HCFC2 chr12:104461725 3'AG 104461725 Downstream 93bp 10372 chr12 104461817 104461817 1 + T C GBM 104461818 + 104461798 104461838 41 GACATAGCTTCTCTTTATATGGTAACAAATGCTATTTGTTT GACATAGCTTCTCTTTATACGGTAACAAATGCTATTTGTTT < 41bp 0.707747717639385 0.5016880695125 NA NA prediction 0.412119296253771 Functional Loss - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104461818 chr12:104461817 synonymous SNV . 0 20 hm7G_associated_SNPs_10985 0 0 0 1 2 HCFC2 chr12:104461885 5'GT 104461885 Upstream 69bp 10373 chr17 61571304 61571304 1 + T C SKCM 61571305 + 61571285 61571325 41 CATGACATCAACTTTCTGATGAAGATGGCCCTTGACAAGAT CATGACATCAACTTTCTGACGAAGATGGCCCTTGACAAGAT < 41bp 0.724942658163305 0.518885095215665 NA NA prediction 0.412115125895281 Functional Loss - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61571305 chr17:61571304 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_10986 0 0 0 0 1 ACE chr17:61571283 3'AG 61571283 Downstream 22bp 10374 chr3 51979185 51979185 1 + A G rs323870 51979186 + 51979166 51979206 41 CACAACTTCGGCCACAGCCAGCCCCCGCCCATCAATTCCCC CACAACTTCGGCCACAGCCGGCCCCCGCCCATCAATTCCCC < 41bp 0.767358508950374 0.561301213279013 NA NA prediction 0.412114591342721 Functional Loss - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979186 chr3:51979185 nonsynonymous SNV 0.273 0 20 hm7G_associated_SNPs_10987 0 0 0 0 1 PARP3 chr3:51979240 5'GT 51979240 Upstream 56bp 10375 chr10 17750830 17750830 1 + T C UCEC 17750831 + 17750811 17750851 41 GTTGCAGGGAACGCGCAGATGAGCCACCTCCAGAGCTACAG GTTGCAGGGAACGCGCAGACGAGCCACCTCCAGAGCTACAG < 41bp 0.742637534875591 0.536588482191489 NA NA prediction 0.412098105368205 Functional Loss - STAM ENSG00000136738 CDS Human protein_coding chr10:17750831 chr10:17750830 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_10988 0 0 1 0 1 STAM chr10:17750775 3'AG 17750775 Downstream 56bp 10376 chr14 73728001 73728001 1 + T C LUSC 73728002 + 73727982 73728022 41 GTGTGGGCCAGCCCAGCCATGGTGAGTGGACACCCCCTCTC GTGTGGGCCAGCCCAGCCACGGTGAGTGGACACCCCCTCTC < 41bp 0.717921400455732 0.511878148272883 NA NA prediction 0.412086504365698 Functional Loss - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73728002 chr14:73728001 synonymous SNV . 0 20 hm7G_associated_SNPs_10989 0 0 0 0 1 PAPLN chr14:73728002 5'GT 73728002 Upstream 2bp 10377 chr2 201527662 201527662 1 + T C COAD 201527663 + 201527643 201527683 41 GAGCTGCCTGTTCCGAGGTTGAAATAGACTGCCTGACGGGG GAGCTGCCTGTTCCGAGGTCGAAATAGACTGCCTGACGGGG < 41bp 0.752164485448297 0.546122568546397 NA NA prediction 0.4120838338038 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201527663 chr2:201527662 synonymous SNV . 0 20 hm7G_associated_SNPs_10990 0 0 0 0 2 AOX1 chr2:201527578 3'AG 201527578 Downstream 85bp 10378 chr2 201527662 201527662 1 + T C COAD 201527663 + 201527643 201527683 41 GAGCTGCCTGTTCCGAGGTTGAAATAGACTGCCTGACGGGG GAGCTGCCTGTTCCGAGGTCGAAATAGACTGCCTGACGGGG < 41bp 0.752164485448297 0.546122568546397 NA NA prediction 0.4120838338038 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201527663 chr2:201527662 synonymous SNV . 0 20 hm7G_associated_SNPs_10990 0 0 0 0 2 AOX1 chr2:201527692 5'GT 201527692 Upstream 31bp 10379 chr1 45220446 45220446 1 + T C UCEC 45220447 + 45220427 45220467 41 TGACAGTAGTTTTCCAAACTGGGAATTTGCCCGAATGATTA TGACAGTAGTTTTCCAAACCGGGAATTTGCCCGAATGATTA < 41bp 0.729481491367166 0.52344133483026 NA NA prediction 0.412080313073812 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45220447 chr1:45220446 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_10991 0 0 1 0 2 KIF2C chr1:45220422 3'AG 45220422 Downstream 25bp 10380 chr1 45220446 45220446 1 + T C UCEC 45220447 + 45220427 45220467 41 TGACAGTAGTTTTCCAAACTGGGAATTTGCCCGAATGATTA TGACAGTAGTTTTCCAAACCGGGAATTTGCCCGAATGATTA < 41bp 0.729481491367166 0.52344133483026 NA NA prediction 0.412080313073812 Functional Loss - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45220447 chr1:45220446 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_10991 0 0 1 0 2 KIF2C chr1:45220517 5'GT 45220517 Upstream 72bp 10381 chr6 37441251 37441251 1 + T C CHOL 37441252 + 37441232 37441272 41 ACTCGTGGCTGCAGGGCACTGAGATTGACATCTTCAGCTAC ACTCGTGGCTGCAGGGCACCGAGATTGACATCTTCAGCTAC < 41bp 0.734246361112161 0.52820798999181 NA NA prediction 0.412076742240702 Functional Loss - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37441252 chr6:37441251 synonymous SNV . 0 20 hm7G_associated_SNPs_10992 0 0 1 0 1 CMTR1 chr6:37441246 3'AG 37441246 Downstream 6bp 10382 chr1 44459571 44459571 1 + A G rs200480885 44459572 + 44459552 44459592 41 TTGCCAGCAGCGGTCACAGAGATCTCAGCATCATCAAGGAC TTGCCAGCAGCGGTCACAGGGATCTCAGCATCATCAAGGAC < 41bp 0.740686723162808 0.534651937714244 NA NA prediction 0.412069570897128 Functional Loss - CCDC24 ENSG00000159214 CDS Human protein_coding chr1:44459572 chr1:44459571 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10993 0 0 0 0 2 CCDC24 chr1:44459559 3'AG 44459559 Downstream 13bp 10383 chr1 44459571 44459571 1 + A G rs200480885 44459572 + 44459552 44459592 41 TTGCCAGCAGCGGTCACAGAGATCTCAGCATCATCAAGGAC TTGCCAGCAGCGGTCACAGGGATCTCAGCATCATCAAGGAC < 41bp 0.740686723162808 0.534651937714244 NA NA prediction 0.412069570897128 Functional Loss - CCDC24 ENSG00000159214 CDS Human protein_coding chr1:44459572 chr1:44459571 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10993 0 0 0 0 2 CCDC24 chr1:44459636 5'GT 44459636 Upstream 66bp 10384 chr13 25895161 25895161 1 + T C UCEC 25895162 + 25895142 25895182 41 AAAGCTCTGAAGCAGCTCCTGTCGTTGGCTGCCAATGGAAT AAAGCTCTGAAGCAGCTCCCGTCGTTGGCTGCCAATGGAAT < 41bp 0.708177868109582 0.502149694399591 NA NA prediction 0.412056347419983 Functional Loss - NUP58 ENSG00000139496 CDS Human protein_coding chr13:25895162 chr13:25895161 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_10994 0 0 1 0 1 NUP58 chr13:25895231 5'GT 25895231 Upstream 71bp 10385 chr4 1738995 1738995 1 + A G UCEC 1738996 + 1738976 1739016 41 GTGCAAATGAGACTCCCTCAGGACGTCCGCGGGAAGCCAAG GTGCAAATGAGACTCCCTCGGGACGTCCGCGGGAAGCCAAG < 41bp 0.788900569780794 0.582872721312394 NA NA prediction 0.412055696936801 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1738996 chr4:1738995 synonymous SNV . 0 20 hm7G_associated_SNPs_10995 0 0 1 0 2 TACC3 chr4:1738968 3'AG 1738968 Downstream 28bp 10386 chr4 1738995 1738995 1 + A G UCEC 1738996 + 1738976 1739016 41 GTGCAAATGAGACTCCCTCAGGACGTCCGCGGGAAGCCAAG GTGCAAATGAGACTCCCTCGGGACGTCCGCGGGAAGCCAAG < 41bp 0.788900569780794 0.582872721312394 NA NA prediction 0.412055696936801 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1738996 chr4:1738995 synonymous SNV . 0 20 hm7G_associated_SNPs_10995 0 0 1 0 2 TACC3 chr4:1739055 5'GT 1739055 Upstream 61bp 10387 chr1 76205685 76205685 1 + T G rs78392995 76205686 + 76205666 76205706 41 CTTATTGTGTAACAGAACCTGGAGCAGGCTCTGATGTAGCT CTTATTGTGTAACAGAACCGGGAGCAGGCTCTGATGTAGCT < 41bp 0.891990130336962 0.685970299394659 NA NA prediction 0.412039661884606 Functional Loss - ACADM ENSG00000117054 CDS Human protein_coding chr1:76205686 chr1:76205685 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_10997 2 0 1 1 1 ACADM chr1:76205665 3'AG 76205665 Downstream 21bp 10388 chr1 235582819 235582819 1 + A G COAD 235582820 + 235582800 235582840 41 GTTGCAAGAAGTTTCTCTGAGGAACTGTGCAGTAAGTTGTG GTTGCAAGAAGTTTCTCTGGGGAACTGTGCAGTAAGTTGTG < 41bp 0.70601790201475 0.497255183355157 NA NA prediction 0.4120358040295 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235582820 chr1:235582819 nonsynonymous SNV 0.931 0 20 hm7G_associated_SNPs_10999 0 0 1 0 3 TBCE chr1:235582732 3'AG 235582732 Downstream 88bp 10389 chr1 235582819 235582819 1 + A G COAD 235582820 + 235582800 235582840 41 GTTGCAAGAAGTTTCTCTGAGGAACTGTGCAGTAAGTTGTG GTTGCAAGAAGTTTCTCTGGGGAACTGTGCAGTAAGTTGTG < 41bp 0.70601790201475 0.497255183355157 NA NA prediction 0.4120358040295 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235582820 chr1:235582819 nonsynonymous SNV 0.931 0 20 hm7G_associated_SNPs_10999 0 0 1 0 3 TBCE chr1:235582788 3'AG 235582788 Downstream 32bp 10390 chr1 235582819 235582819 1 + A G COAD 235582820 + 235582800 235582840 41 GTTGCAAGAAGTTTCTCTGAGGAACTGTGCAGTAAGTTGTG GTTGCAAGAAGTTTCTCTGGGGAACTGTGCAGTAAGTTGTG < 41bp 0.70601790201475 0.497255183355157 NA NA prediction 0.4120358040295 Functional Loss - TBCE ENSG00000116957 CDS Human protein_coding chr1:235582820 chr1:235582819 nonsynonymous SNV 0.931 0 20 hm7G_associated_SNPs_10999 0 0 1 0 3 TBCE chr1:235582876 5'GT 235582876 Upstream 58bp 10391 chr3 38035759 38035759 1 + A G COAD 38035760 + 38035740 38035780 41 CCCGGACCCTAGGTCCCCCAGAGCCCGAAGGCCACGCAGGG CCCGGACCCTAGGTCCCCCGGAGCCCGAAGGCCACGCAGGG < 41bp 0.706015234650734 0.476161956476985 NA NA prediction 0.412030469301468 Functional Loss - VILL ENSG00000136059 CDS Human protein_coding chr3:38035760 chr3:38035759 nonsynonymous SNV 0.107 0 20 hm7G_associated_SNPs_11000 0 0 0 0 1 VILL chr3:38035752 3'AG 38035752 Downstream 8bp 10392 chr5 43700278 43700278 1 + T G PRAD 43700279 + 43700259 43700299 41 AGCTTAATGTGCTGCTGGCTGAGGCTGGTGTGCCATATGAC AGCTTAATGTGCTGCTGGCGGAGGCTGGTGTGCCATATGAC < 41bp 0.904501241370825 0.698490564681619 NA NA prediction 0.412021353378413 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43700279 chr5:43700278 synonymous SNV . 0 20 hm7G_associated_SNPs_11001 0 0 1 0 2 NNT chr5:43700221 3'AG 43700221 Downstream 58bp 10393 chr5 43700278 43700278 1 + T G PRAD 43700279 + 43700259 43700299 41 AGCTTAATGTGCTGCTGGCTGAGGCTGGTGTGCCATATGAC AGCTTAATGTGCTGCTGGCGGAGGCTGGTGTGCCATATGAC < 41bp 0.904501241370825 0.698490564681619 NA NA prediction 0.412021353378413 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43700279 chr5:43700278 synonymous SNV . 0 20 hm7G_associated_SNPs_11001 0 0 1 0 2 NNT chr5:43700339 5'GT 43700339 Upstream 62bp 10394 chr7 86991068 86991068 1 + T C UCEC 86991069 + 86991049 86991089 41 AAGTGCCTGTTCATAAAGTTGGAAATACTCCTCTAGATATG AAGTGCCTGTTCATAAAGTCGGAAATACTCCTCTAGATATG < 41bp 0.70599476339542 0.49772192787613 NA NA prediction 0.411989526790841 Functional Loss - CROT ENSG00000005469 CDS Human protein_coding chr7:86991069 chr7:86991068 synonymous SNV . 0 20 hm7G_associated_SNPs_11003 0 0 0 0 1 CROT chr7:86991044 3'AG 86991044 Downstream 25bp 10395 chr15 67457694 67457694 1 + A G LAML 67457695 + 67457675 67457715 41 AAAACACTAACTTCCCCGCAGGCATCGAGCCCCAGAGCAAT AAAACACTAACTTCCCCGCGGGCATCGAGCCCCAGAGCAAT < 41bp 0.765883237963378 0.559900387972481 NA NA prediction 0.411965699981794 Functional Loss - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67457695 chr15:67457694 synonymous SNV . 0 20 hm7G_associated_SNPs_11005 0 0 1 0 1 SMAD3 chr15:67457722 5'GT 67457722 Upstream 29bp 10396 chr1 153609066 153609066 1 + T C BLCA 153609067 + 153609047 153609087 41 GATTCTCGGGATTCGAAGATGGCTGCACAGTCAGCGCCGAA GATTCTCGGGATTCGAAGACGGCTGCACAGTCAGCGCCGAA < 41bp 0.707705643258132 0.501726714546474 NA NA prediction 0.411957857423316 Functional Loss - CHTOP ENSG00000160679 CDS Human protein_coding chr1:153609067 chr1:153609066 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11006 0 0 1 0 1 CHTOP chr1:153609129 5'GT 153609129 Upstream 64bp 10397 chr7 129909579 129909579 1 + A G LUAD 129909580 + 129909560 129909600 41 GTTCCCTTCGTCAACGTCCAGGCAGTCAAAGTGTTCTTGGA GTTCCCTTCGTCAACGTCCGGGCAGTCAAAGTGTTCTTGGA < 41bp 0.705977063220017 0.4963183681757 NA NA prediction 0.411954126440033 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129909580 chr7:129909579 nonsynonymous SNV 0.079 0 20 hm7G_associated_SNPs_11008 0 0 0 0 2 CPA2 chr7:129909509 3'AG 129909509 Downstream 71bp 10398 chr7 129909579 129909579 1 + A G LUAD 129909580 + 129909560 129909600 41 GTTCCCTTCGTCAACGTCCAGGCAGTCAAAGTGTTCTTGGA GTTCCCTTCGTCAACGTCCGGGCAGTCAAAGTGTTCTTGGA < 41bp 0.705977063220017 0.4963183681757 NA NA prediction 0.411954126440033 Functional Loss - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129909580 chr7:129909579 nonsynonymous SNV 0.079 0 20 hm7G_associated_SNPs_11008 0 0 0 0 2 CPA2 chr7:129909643 5'GT 129909643 Upstream 65bp 10399 chr1 167962542 167962542 1 + T C UCEC 167962543 + 167962523 167962563 41 AATAATAAGTCCTGCAGAGTGACATCTCTGTGTTACAGTGA AATAATAAGTCCTGCAGAGCGACATCTCTGTGTTACAGTGA < 41bp 0.716340480825608 0.510386161105096 NA NA prediction 0.411908639441025 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:167962543 chr1:167962542 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11009 0 0 1 0 1 DCAF6 chr1:167962464 3'AG 167962464 Downstream 79bp 10400 chr13 31860939 31860939 1 + T C UCEC 31860940 + 31860920 31860960 41 CATGGTTAGTCATTGTGGATGATGATACATTAATAAGGTAA CATGGTTAGTCATTGTGGACGATGATACATTAATAAGGTAA < 41bp 0.705953822868721 0.495820355919919 NA NA prediction 0.411907645737442 Functional Loss - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31860940 chr13:31860939 synonymous SNV . 0 20 hm7G_associated_SNPs_11010 0 0 0 0 2 B3GLCT chr13:31860857 3'AG 31860857 Downstream 83bp 10401 chr13 31860939 31860939 1 + T C UCEC 31860940 + 31860920 31860960 41 CATGGTTAGTCATTGTGGATGATGATACATTAATAAGGTAA CATGGTTAGTCATTGTGGACGATGATACATTAATAAGGTAA < 41bp 0.705953822868721 0.495820355919919 NA NA prediction 0.411907645737442 Functional Loss - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31860940 chr13:31860939 synonymous SNV . 0 20 hm7G_associated_SNPs_11010 0 0 0 0 2 B3GLCT chr13:31860956 5'GT 31860956 Upstream 18bp 10402 chr11 128638132 128638132 1 + T G UCEC 128638133 + 128638113 128638153 41 GGCCCCCCTCCTCCCAACATGACCACCAACGAGAGGAGAGT GGCCCCCCTCCTCCCAACAGGACCACCAACGAGAGGAGAGT < 41bp 0.705953449945172 0.355469011628642 NA NA prediction 0.411906899890344 Functional Loss - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128638133 chr11:128638132 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11011 0 0 0 0 1 FLI1 chr11:128638167 5'GT 128638167 Upstream 36bp 10403 chr17 7252480 7252480 1 + A G UCEC 7252481 + 7252461 7252501 41 CACCGCTGATCCAGGCCACAGCTGCTGTAAGAGCCCTGCTG CACCGCTGATCCAGGCCACGGCTGCTGTAAGAGCCCTGCTG < 41bp 0.762571403260077 0.556621401125028 NA NA prediction 0.411900004270098 Functional Loss - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7252481 chr17:7252480 synonymous SNV . 0 20 hm7G_associated_SNPs_11012 0 0 0 0 1 ACAP1 chr17:7252486 5'GT 7252486 Upstream 7bp 10404 chr11 5625792 5625792 1 + T G STAD 5625793 + 5625773 5625813 41 CAGGAGTCTCTAAAGAAGCTGAAGAACGAGGAGCAGGAAGC CAGGAGTCTCTAAAGAAGCGGAAGAACGAGGAGCAGGAAGC < 41bp 0.906767498522981 0.700823513221463 NA NA prediction 0.411887970603035 Functional Loss - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5625793 chr11:5625792 nonsynonymous SNV 0.763 3 20 hm7G_associated_SNPs_11013 0 0 0 0 1 TRIM6;TRIM6-TRIM34 chr11:5625764 3'AG 5625764 Downstream 29bp 10405 chr7 130002317 130002317 1 + T C rs1544705 130002318 + 130002298 130002338 41 GGCACCCAGCCATCTGGATTGACACTGGAATTCACTCCCGG GGCACCCAGCCATCTGGATCGACACTGGAATTCACTCCCGG < 41bp 0.732340361329923 0.526411732699102 NA NA prediction 0.411857257261642 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002318 chr7:130002317 synonymous SNV . 0 20 hm7G_associated_SNPs_11018 0 0 0 0 2 CPA5 chr7:130002279 3'AG 130002279 Downstream 39bp 10406 chr7 130002317 130002317 1 + T C rs1544705 130002318 + 130002298 130002338 41 GGCACCCAGCCATCTGGATTGACACTGGAATTCACTCCCGG GGCACCCAGCCATCTGGATCGACACTGGAATTCACTCCCGG < 41bp 0.732340361329923 0.526411732699102 NA NA prediction 0.411857257261642 Functional Loss - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130002318 chr7:130002317 synonymous SNV . 0 20 hm7G_associated_SNPs_11018 0 0 0 0 2 CPA5 chr7:130002380 5'GT 130002380 Upstream 64bp 10407 chr11 113857629 113857629 1 + A G UCEC 113857630 + 113857610 113857650 41 TGCGGCTGGTGCACAAGCAAGACCTGCAGCAGCCCGTGCCT TGCGGCTGGTGCACAAGCAGGACCTGCAGCAGCCCGTGCCT < 41bp 0.75055952952208 0.544636046052239 NA NA prediction 0.41184696693968 Functional Loss - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857630 chr11:113857629 synonymous SNV . 0 20 hm7G_associated_SNPs_11019 0 0 0 1 1 HTR3A chr11:113857547 3'AG 113857547 Downstream 83bp 10408 chr17 7804629 7804629 1 + T C LIHC 7804630 + 7804610 7804650 41 AAGTCGTCTGGGAAGCTCATGCTGCTCCAGAAGATGCTGCG AAGTCGTCTGGGAAGCTCACGCTGCTCCAGAAGATGCTGCG < 41bp 0.767931934488192 0.562021142076922 NA NA prediction 0.411821584822541 Functional Loss - CHD3 ENSG00000170004 CDS Human protein_coding chr17:7804630 chr17:7804629 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_11020 0 0 1 0 2 CHD3 chr17:7804562 3'AG 7804562 Downstream 68bp 10409 chr17 7804629 7804629 1 + T C LIHC 7804630 + 7804610 7804650 41 AAGTCGTCTGGGAAGCTCATGCTGCTCCAGAAGATGCTGCG AAGTCGTCTGGGAAGCTCACGCTGCTCCAGAAGATGCTGCG < 41bp 0.767931934488192 0.562021142076922 NA NA prediction 0.411821584822541 Functional Loss - CHD3 ENSG00000170004 CDS Human protein_coding chr17:7804630 chr17:7804629 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_11020 0 0 1 0 2 CHD3 chr17:7804693 5'GT 7804693 Upstream 65bp 10410 chr14 45606405 45606405 1 + T C COAD 45606406 + 45606386 45606426 41 TAAAGTGTTTAGTTATTGATGAAGCTCATAAAGCTCTCGGA TAAAGTGTTTAGTTATTGACGAAGCTCATAAAGCTCTCGGA < 41bp 0.715721549793869 0.509812939074154 NA NA prediction 0.411817221439431 Functional Loss - FANCM ENSG00000187790 CDS Human protein_coding chr14:45606406 chr14:45606405 synonymous SNV . 0 20 hm7G_associated_SNPs_11022 0 0 1 0 1 FANCM chr14:45606444 5'GT 45606444 Upstream 40bp 10411 chr12 109283258 109283258 1 + A G COAD 109283259 + 109283239 109283279 41 CTTCAGGACCCTTCCTGGAAGGACACAGTTCTGGGATTTCG CTTCAGGACCCTTCCTGGAGGGACACAGTTCTGGGATTTCG < 41bp 0.734510288311174 0.52860470922481 NA NA prediction 0.411811158172728 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109283259 chr12:109283258 nonsynonymous SNV 0.291 1 20 hm7G_associated_SNPs_11023 0 0 0 0 2 DAO chr12:109283245 3'AG 109283245 Downstream 14bp 10412 chr12 109283258 109283258 1 + A G COAD 109283259 + 109283239 109283279 41 CTTCAGGACCCTTCCTGGAAGGACACAGTTCTGGGATTTCG CTTCAGGACCCTTCCTGGAGGGACACAGTTCTGGGATTTCG < 41bp 0.734510288311174 0.52860470922481 NA NA prediction 0.411811158172728 Functional Loss - DAO ENSG00000110887 CDS Human protein_coding chr12:109283259 chr12:109283258 nonsynonymous SNV 0.291 1 20 hm7G_associated_SNPs_11023 0 0 0 0 2 DAO chr12:109283321 5'GT 109283321 Upstream 64bp 10413 chr7 134766501 134766501 1 + T C rs375875978 134766502 + 134766482 134766522 41 AATGAACCAGATGATTATATGGTTGATTATTTCAGAAGACA AATGAACCAGATGATTATACGGTTGATTATTTCAGAAGACA < 41bp 0.707948700867719 0.502048278061881 NA NA prediction 0.411800845611676 Functional Loss - AGBL3 ENSG00000146856 CDS Human protein_coding chr7:134766502 chr7:134766501 nonsynonymous SNV 0.030 1 20 hm7G_associated_SNPs_11024 0 0 0 0 2 AGBL3 chr7:134766471 3'AG 134766471 Downstream 31bp 10414 chr7 134766501 134766501 1 + T C rs375875978 134766502 + 134766482 134766522 41 AATGAACCAGATGATTATATGGTTGATTATTTCAGAAGACA AATGAACCAGATGATTATACGGTTGATTATTTCAGAAGACA < 41bp 0.707948700867719 0.502048278061881 NA NA prediction 0.411800845611676 Functional Loss - AGBL3 ENSG00000146856 CDS Human protein_coding chr7:134766502 chr7:134766501 nonsynonymous SNV 0.030 1 20 hm7G_associated_SNPs_11024 0 0 0 0 2 AGBL3 chr7:134766542 5'GT 134766542 Upstream 42bp 10415 chr1 22848873 22848873 1 + T C UCEC 22848874 + 22848854 22848894 41 TTTATGCACTTCACAGATATGAAGTTCCATGAATGTGACCA TTTATGCACTTCACAGATACGAAGTTCCATGAATGTGACCA < 41bp 0.726097715748949 0.520208085247559 NA NA prediction 0.411779261002779 Functional Loss - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22848874 chr1:22848873 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_11026 0 0 0 0 2 ZBTB40 chr1:22848870 3'AG 22848870 Downstream 4bp 10416 chr1 22848873 22848873 1 + T C UCEC 22848874 + 22848854 22848894 41 TTTATGCACTTCACAGATATGAAGTTCCATGAATGTGACCA TTTATGCACTTCACAGATACGAAGTTCCATGAATGTGACCA < 41bp 0.726097715748949 0.520208085247559 NA NA prediction 0.411779261002779 Functional Loss - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22848874 chr1:22848873 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_11026 0 0 0 0 2 ZBTB40 chr1:22848956 5'GT 22848956 Upstream 84bp 10417 chr11 60059749 60059749 1 + A G LGG 60059750 + 60059730 60059770 41 GAATGGAACAGGCCATGCCAGGGGCTGGCCCTGGTGTGCCC GAATGGAACAGGCCATGCCGGGGGCTGGCCCTGGTGTGCCC < 41bp 0.728042858231821 0.522189884513093 NA NA prediction 0.411705947437457 Functional Loss - MS4A4A ENSG00000110079 CDS Human protein_coding chr11:60059750 chr11:60059749 synonymous SNV . 0 20 hm7G_associated_SNPs_11027 0 0 0 0 1 MS4A4A chr11:60059698 3'AG 60059698 Downstream 52bp 10418 chr3 121647918 121647918 1 + T C CESC 121647919 + 121647899 121647939 41 ACAATTTGTCTCTCTACACTGAGCATTCTGTGCAGGAGAAG ACAATTTGTCTCTCTACACCGAGCATTCTGTGCAGGAGAAG < 41bp 0.74030532734384 0.534453142788906 NA NA prediction 0.411704369109867 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121647919 chr3:121647918 synonymous SNV . 0 20 hm7G_associated_SNPs_11028 0 0 0 0 2 SLC15A2 chr3:121647829 3'AG 121647829 Downstream 90bp 10419 chr3 121647918 121647918 1 + T C CESC 121647919 + 121647899 121647939 41 ACAATTTGTCTCTCTACACTGAGCATTCTGTGCAGGAGAAG ACAATTTGTCTCTCTACACCGAGCATTCTGTGCAGGAGAAG < 41bp 0.74030532734384 0.534453142788906 NA NA prediction 0.411704369109867 Functional Loss - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121647919 chr3:121647918 synonymous SNV . 0 20 hm7G_associated_SNPs_11028 0 0 0 0 2 SLC15A2 chr3:121647993 5'GT 121647993 Upstream 76bp 10420 chr9 2645695 2645695 1 + T C LGG 2645696 + 2645676 2645716 41 TGGCTCTCGATGCTGACATTGCTGCCCAGAAACTATTCTGG TGGCTCTCGATGCTGACATCGCTGCCCAGAAACTATTCTGG < 41bp 0.724275906084386 0.518424317663732 NA NA prediction 0.411703176841308 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2645696 chr9:2645695 synonymous SNV . 0 20 hm7G_associated_SNPs_11029 0 0 0 0 1 VLDLR chr9:2645745 5'GT 2645745 Upstream 51bp 10421 chr15 97327407 97327407 1 + A G LIHC 97327408 + 97327388 97327428 41 CGTCGCGACATTTCTCAGAAGCCATGACATGTCCCTGCGGC CGTCGCGACATTTCTCAGAGGCCATGACATGTCCCTGCGGC < 41bp 0.705833897060614 0.479039898840496 NA NA prediction 0.411667794121227 Functional Loss - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97327408 chr15:97327407 synonymous SNV . 0 20 hm7G_associated_SNPs_11031 0 0 0 0 2 SPATA8 chr15:97327383 3'AG 97327383 Downstream 25bp 10422 chr15 97327407 97327407 1 + A G LIHC 97327408 + 97327388 97327428 41 CGTCGCGACATTTCTCAGAAGCCATGACATGTCCCTGCGGC CGTCGCGACATTTCTCAGAGGCCATGACATGTCCCTGCGGC < 41bp 0.705833897060614 0.479039898840496 NA NA prediction 0.411667794121227 Functional Loss - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97327408 chr15:97327407 synonymous SNV . 0 20 hm7G_associated_SNPs_11031 0 0 0 0 2 SPATA8 chr15:97327489 5'GT 97327489 Upstream 83bp 10423 chr3 184106414 184106414 1 + A G COAD 184106415 + 184106395 184106435 41 CAGCTGGGGGACCCCATGCAGGCTGATGGGCCCCGGGGCTG CAGCTGGGGGACCCCATGCGGGCTGATGGGCCCCGGGGCTG < 41bp 0.78220012635194 0.576368376112836 NA NA prediction 0.411663500478207 Functional Loss - CHRD ENSG00000090539 CDS Human protein_coding chr3:184106415 chr3:184106414 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_11032 0 0 1 0 1 CHRD chr3:184106375 3'AG 184106375 Downstream 40bp 10424 chr1 158988089 158988089 1 + T C UCEC 158988090 + 158988070 158988110 41 CAAAAACGCCCAGTGATAGTGAAGGTACTGAGTACAACAAA CAAAAACGCCCAGTGATAGCGAAGGTACTGAGTACAACAAA < 41bp 0.71209622576152 0.506265241732001 NA NA prediction 0.411661968059037 Functional Loss - IFI16 ENSG00000163565 CDS Human protein_coding chr1:158988090 chr1:158988089 nonsynonymous SNV 0.031 2 20 hm7G_associated_SNPs_11033 0 0 0 0 1 IFI16 chr1:158988019 3'AG 158988019 Downstream 71bp 10425 chr1 41457492 41457492 1 + T C LIHC 41457493 + 41457473 41457513 41 GTGAAGGAGAAAATATCAATGTTCTGCCATGTTGAGCCTGA GTGAAGGAGAAAATATCAACGTTCTGCCATGTTGAGCCTGA < 41bp 0.708871303207086 0.503046959636711 NA NA prediction 0.411648687140751 Functional Loss - CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41457493 chr1:41457492 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_11036 0 0 1 0 2 CTPS1 chr1:41457437 3'AG 41457437 Downstream 56bp 10426 chr1 41457492 41457492 1 + T C LIHC 41457493 + 41457473 41457513 41 GTGAAGGAGAAAATATCAATGTTCTGCCATGTTGAGCCTGA GTGAAGGAGAAAATATCAACGTTCTGCCATGTTGAGCCTGA < 41bp 0.708871303207086 0.503046959636711 NA NA prediction 0.411648687140751 Functional Loss - CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41457493 chr1:41457492 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_11036 0 0 1 0 2 CTPS1 chr1:41457517 5'GT 41457517 Upstream 26bp 10427 chr17 77708919 77708919 1 + A G SKCM 77708920 + 77708900 77708940 41 CTGTGACGCGGAGCCGGAAAGAAGGCATCGCACACAACTAC CTGTGACGCGGAGCCGGAAGGAAGGCATCGCACACAACTAC < 41bp 0.745915647405964 0.540093354725891 NA NA prediction 0.411644585360145 Functional Loss - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77708920 chr17:77708919 synonymous SNV . 0 20 hm7G_associated_SNPs_11037 0 0 0 0 1 ENPP7 chr17:77708842 3'AG 77708842 Downstream 78bp 10428 chr6 33647882 33647882 1 + T C UCEC 33647883 + 33647863 33647903 41 CTGGAGGACGTGGTGTCTGTGGTGACGCATGAGGACTGCAT CTGGAGGACGTGGTGTCTGCGGTGACGCATGAGGACTGCAT < 41bp 0.73379903537948 0.527987433886061 NA NA prediction 0.411623202986839 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33647883 chr6:33647882 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_11038 0 0 1 0 1 ITPR3 chr6:33647910 5'GT 33647910 Upstream 29bp 10429 chr2 79253268 79253268 1 + T C LUSC 79253269 + 79253249 79253289 41 GTCCTGGATGCTGCTTTCCTGCCTCATTCTCCTGTGTCAGG GTCCTGGATGCTGCTTTCCCGCCTCATTCTCCTGTGTCAGG < 41bp 0.705800672970467 0.49526283746953 NA NA prediction 0.411601345940934 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253269 chr2:79253268 nonsynonymous SNV 0.612 1 20 hm7G_associated_SNPs_11040 0 0 0 0 2 REG3G chr2:79253209 3'AG 79253209 Downstream 60bp 10430 chr2 79253268 79253268 1 + T C LUSC 79253269 + 79253249 79253289 41 GTCCTGGATGCTGCTTTCCTGCCTCATTCTCCTGTGTCAGG GTCCTGGATGCTGCTTTCCCGCCTCATTCTCCTGTGTCAGG < 41bp 0.705800672970467 0.49526283746953 NA NA prediction 0.411601345940934 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79253269 chr2:79253268 nonsynonymous SNV 0.612 1 20 hm7G_associated_SNPs_11040 0 0 0 0 2 REG3G chr2:79253295 5'GT 79253295 Upstream 28bp 10431 chr17 18003953 18003953 1 + A G UCEC 18003954 + 18003934 18003974 41 TGCTCGGAAAAGCTGGTGCAGCTCATCCTGCACGAATACAG TGCTCGGAAAAGCTGGTGCGGCTCATCCTGCACGAATACAG < 41bp 0.720879645218691 0.515102034912164 NA NA prediction 0.411555220613055 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18003954 chr17:18003953 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11042 0 0 1 0 2 DRG2 chr17:18003883 3'AG 18003883 Downstream 71bp 10432 chr17 18003953 18003953 1 + A G UCEC 18003954 + 18003934 18003974 41 TGCTCGGAAAAGCTGGTGCAGCTCATCCTGCACGAATACAG TGCTCGGAAAAGCTGGTGCGGCTCATCCTGCACGAATACAG < 41bp 0.720879645218691 0.515102034912164 NA NA prediction 0.411555220613055 Functional Loss - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18003954 chr17:18003953 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11042 0 0 1 0 2 DRG2 chr17:18003973 5'GT 18003973 Upstream 21bp 10433 chr2 220285067 220285067 1 + A G UCEC 220285068 + 220285048 220285088 41 CTTAAGAAAGTGCATGAAGAGGTATACCTTGGCCCCTCTTC CTTAAGAAAGTGCATGAAGGGGTATACCTTGGCCCCTCTTC < 41bp 0.735864557709905 0.530095619798819 NA NA prediction 0.411537875822172 Functional Loss - DES ENSG00000175084 CDS Human protein_coding chr2:220285068 chr2:220285067 nonsynonymous SNV 0.866 5 20 hm7G_associated_SNPs_11046 0 0 0 0 2 DES chr2:220284973 3'AG 220284973 Downstream 95bp 10434 chr2 220285067 220285067 1 + A G UCEC 220285068 + 220285048 220285088 41 CTTAAGAAAGTGCATGAAGAGGTATACCTTGGCCCCTCTTC CTTAAGAAAGTGCATGAAGGGGTATACCTTGGCCCCTCTTC < 41bp 0.735864557709905 0.530095619798819 NA NA prediction 0.411537875822172 Functional Loss - DES ENSG00000175084 CDS Human protein_coding chr2:220285068 chr2:220285067 nonsynonymous SNV 0.866 5 20 hm7G_associated_SNPs_11046 0 0 0 0 2 DES chr2:220285068 5'GT 220285068 Upstream 2bp 10435 chr2 113416617 113416617 1 + A G LGG 113416618 + 113416598 113416638 41 GGAAGCTCCAGAGAGAGAGAGGCTTCCCAGCGTGGACTTGA GGAAGCTCCAGAGAGAGAGGGGCTTCCCAGCGTGGACTTGA < 41bp 0.71021877597842 0.504458128851144 NA NA prediction 0.411521294254552 Functional Loss - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113416618 chr2:113416617 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_11047 0 0 1 0 1 SLC20A1 chr2:113416671 5'GT 113416671 Upstream 55bp 10436 chr14 77242261 77242261 1 + T G UCEC 77242262 + 77242242 77242282 41 ACCAACAGCATGCCCACCCTGGAGCGCTTCCCCATCAGCTT ACCAACAGCATGCCCACCCGGGAGCGCTTCCCCATCAGCTT < 41bp 0.705742139951353 0.348329086816512 NA NA prediction 0.411484279902707 Functional Loss - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77242262 chr14:77242261 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11048 0 0 0 0 1 VASH1 chr14:77242235 3'AG 77242235 Downstream 27bp 10437 chr10 91484819 91484819 1 + T C UCEC 91484820 + 91484800 91484840 41 AGATATTAGAAGAAAATGCTGAACGTCGTTTGGCTATCTTC AGATATTAGAAGAAAATGCCGAACGTCGTTTGGCTATCTTC < 41bp 0.705735504315183 0.49749312608346 NA NA prediction 0.411471008630365 Functional Loss - KIF20B ENSG00000138182 CDS Human protein_coding chr10:91484820 chr10:91484819 synonymous SNV . 0 20 hm7G_associated_SNPs_11051 0 0 1 0 2 KIF20B chr10:91484777 3'AG 91484777 Downstream 43bp 10438 chr10 91484819 91484819 1 + T C UCEC 91484820 + 91484800 91484840 41 AGATATTAGAAGAAAATGCTGAACGTCGTTTGGCTATCTTC AGATATTAGAAGAAAATGCCGAACGTCGTTTGGCTATCTTC < 41bp 0.705735504315183 0.49749312608346 NA NA prediction 0.411471008630365 Functional Loss - KIF20B ENSG00000138182 CDS Human protein_coding chr10:91484820 chr10:91484819 synonymous SNV . 0 20 hm7G_associated_SNPs_11051 0 0 1 0 2 KIF20B chr10:91484915 5'GT 91484915 Upstream 97bp 10439 chr18 21708875 21708875 1 + T C UCEC 21708876 + 21708856 21708896 41 ATGAAGTGGATGACTCATCTGTTGTTGGATTAAAGTATTTG ATGAAGTGGATGACTCATCCGTTGTTGGATTAAAGTATTTG < 41bp 0.705732894492823 0.496021977455097 NA NA prediction 0.411465788985646 Functional Loss - TTC39C ENSG00000168234 CDS Human protein_coding chr18:21708876 chr18:21708875 synonymous SNV . 0 20 hm7G_associated_SNPs_11053 0 0 1 0 2 TTC39C chr18:21708850 3'AG 21708850 Downstream 26bp 10440 chr18 21708875 21708875 1 + T C UCEC 21708876 + 21708856 21708896 41 ATGAAGTGGATGACTCATCTGTTGTTGGATTAAAGTATTTG ATGAAGTGGATGACTCATCCGTTGTTGGATTAAAGTATTTG < 41bp 0.705732894492823 0.496021977455097 NA NA prediction 0.411465788985646 Functional Loss - TTC39C ENSG00000168234 CDS Human protein_coding chr18:21708876 chr18:21708875 synonymous SNV . 0 20 hm7G_associated_SNPs_11053 0 0 1 0 2 TTC39C chr18:21708947 5'GT 21708947 Upstream 73bp 10441 chr20 58545204 58545204 1 + A G ESCA 58545205 + 58545185 58545225 41 ACCACCTTGGAGCTGGAGGAGGAAGACCCGGGACCCTTTCC ACCACCTTGGAGCTGGAGGGGGAAGACCCGGGACCCTTTCC < 41bp 0.726990821675115 0.521265973676414 NA NA prediction 0.411449695997404 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58545205 chr20:58545204 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_11054 0 0 0 0 2 CDH26 chr20:58545137 3'AG 58545137 Downstream 68bp 10442 chr20 58545204 58545204 1 + A G ESCA 58545205 + 58545185 58545225 41 ACCACCTTGGAGCTGGAGGAGGAAGACCCGGGACCCTTTCC ACCACCTTGGAGCTGGAGGGGGAAGACCCGGGACCCTTTCC < 41bp 0.726990821675115 0.521265973676414 NA NA prediction 0.411449695997404 Functional Loss - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58545205 chr20:58545204 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_11054 0 0 0 0 2 CDH26 chr20:58545241 5'GT 58545241 Upstream 38bp 10443 chr19 3937280 3937280 1 + T G UCEC 3937281 + 3937261 3937301 41 GGAAGACGGCTTCAAACAGTGGGACGGTAAGGACAAGCATC GGAAGACGGCTTCAAACAGGGGGACGGTAAGGACAAGCATC < 41bp 0.912143619530706 0.706423361675087 NA NA prediction 0.411440515711238 Functional Loss - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3937281 chr19:3937280 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_11055 0 0 0 0 3 NMRK2 chr19:3937223 3'AG 3937223 Downstream 58bp 10444 chr19 3937280 3937280 1 + T G UCEC 3937281 + 3937261 3937301 41 GGAAGACGGCTTCAAACAGTGGGACGGTAAGGACAAGCATC GGAAGACGGCTTCAAACAGGGGGACGGTAAGGACAAGCATC < 41bp 0.912143619530706 0.706423361675087 NA NA prediction 0.411440515711238 Functional Loss - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3937281 chr19:3937280 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_11055 0 0 0 0 3 NMRK2 chr19:3937238 3'AG 3937238 Downstream 43bp 10445 chr19 3937280 3937280 1 + T G UCEC 3937281 + 3937261 3937301 41 GGAAGACGGCTTCAAACAGTGGGACGGTAAGGACAAGCATC GGAAGACGGCTTCAAACAGGGGGACGGTAAGGACAAGCATC < 41bp 0.912143619530706 0.706423361675087 NA NA prediction 0.411440515711238 Functional Loss - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3937281 chr19:3937280 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_11055 0 0 0 0 3 NMRK2 chr19:3937286 5'GT 3937286 Upstream 7bp 10446 chr16 31373508 31373508 1 + T C STAD 31373509 + 31373489 31373529 41 TCTCAGGAGAATGTGGACATGAGGGACTCTTACCTGGGTGA TCTCAGGAGAATGTGGACACGAGGGACTCTTACCTGGGTGA < 41bp 0.70571086393029 0.49049078072464 NA NA prediction 0.411421727860579 Functional Loss - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31373509 chr16:31373508 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11056 0 0 0 0 1 ITGAX chr16:31373525 5'GT 31373525 Upstream 18bp 10447 chr10 43281089 43281089 1 + T C rs7074877 43281090 + 43281070 43281110 41 TTACCCGGCAGAAGTTGACTGAGATCAGAGGCCCTGTGACG TTACCCGGCAGAAGTTGACCGAGATCAGAGGCCCTGTGACG < 41bp 0.727933744782329 0.522224013586836 NA NA prediction 0.411419462390985 Functional Loss - BMS1 ENSG00000165733 CDS Human protein_coding chr10:43281090 chr10:43281089 synonymous SNV . 0 20 hm7G_associated_SNPs_11057 0 0 1 0 1 BMS1 chr10:43281120 5'GT 43281120 Upstream 32bp 10448 chr4 69693099 69693099 1 + T C rs71616905 69693100 + 69693080 69693120 41 GTGGAGCCAATGGCATCTATGAGGCAATCTACCATGGGATC GTGGAGCCAATGGCATCTACGAGGCAATCTACCATGGGATC < 41bp 0.712230259087792 0.506530611956425 NA NA prediction 0.411399294262733 Functional Loss - UGT2B10 ENSG00000109181 CDS Human protein_coding chr4:69693100 chr4:69693099 synonymous SNV . 0 20 hm7G_associated_SNPs_11058 0 0 0 0 1 UGT2B10 chr4:69693047 3'AG 69693047 Downstream 53bp 10449 chr20 34782171 34782171 1 + T C rs2295568 34782172 + 34782152 34782192 41 CCTCGGTCAGCGAGAACCATGATGCAGGGCCTGACGGTGAC CCTCGGTCAGCGAGAACCACGATGCAGGGCCTGACGGTGAC < 41bp 0.705694347886293 0.496129082223682 NA NA prediction 0.411388695772585 Functional Loss - EPB41L1 ENSG00000088367 CDS Human protein_coding chr20:34782172 chr20:34782171 synonymous SNV . 0 20 hm7G_associated_SNPs_11059 1 0 1 0 1 EPB41L1 chr20:34782134 3'AG 34782134 Downstream 38bp 10450 chr1 171756984 171756984 1 + A G STAD 171756985 + 171756965 171757005 41 GATGTGCAAGGGGATGACAAGCGATACTTCCGTCGACTGAT GATGTGCAAGGGGATGACAGGCGATACTTCCGTCGACTGAT < 41bp 0.72231701386383 0.516630763151641 NA NA prediction 0.411372501424377 Functional Loss - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756985 chr1:171756984 nonsynonymous SNV 0.317 0 20 hm7G_associated_SNPs_11061 0 0 1 0 1 METTL13 chr1:171757070 5'GT 171757070 Upstream 87bp 10451 chr5 43656024 43656024 1 + T C rs56193661 43656025 + 43656005 43656045 41 GTTTAGTGGGTTTGGCAGCTGTACTTACTTGCATAGCTGAG GTTTAGTGGGTTTGGCAGCCGTACTTACTTGCATAGCTGAG < 41bp 0.730493283141686 0.524811615272505 NA NA prediction 0.411363335738363 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43656025 chr5:43656024 synonymous SNV . 0 20 hm7G_associated_SNPs_11063 0 0 1 0 1 NNT chr5:43655942 3'AG 43655942 Downstream 83bp 10452 chr1 26879985 26879985 1 + A G UCEC 26879986 + 26879966 26880006 41 TACAGAGACCTCAAGCCTGAGAAGTGAGTGAAGCCTCCAGC TACAGAGACCTCAAGCCTGGGAAGTGAGTGAAGCCTCCAGC < 41bp 0.718972453846654 0.513304199935081 NA NA prediction 0.411336507823147 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26879986 chr1:26879985 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11065 0 0 0 0 1 RPS6KA1 chr1:26879988 5'GT 26879988 Upstream 4bp 10453 chr6 41196694 41196694 1 + T G SKCM 41196695 + 41196675 41196715 41 TGATTCAGCTGACACAGAATGACTCGGGATTCTACTGGTGT TGATTCAGCTGACACAGAAGGACTCGGGATTCTACTGGTGT < 41bp 0.705667637110801 0.377132879424209 NA NA prediction 0.411335274221602 Functional Loss - TREML4 ENSG00000188056 CDS Human protein_coding chr6:41196695 chr6:41196694 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_11066 0 0 0 0 1 TREML4 chr6:41196782 5'GT 41196782 Upstream 89bp 10454 chr19 39871257 39871257 1 + A G COAD 39871258 + 39871238 39871278 41 GCTCCAACTCGCTCCCCATAGCTGGCTCTGTGGGGATGGGA GCTCCAACTCGCTCCCCATGGCTGGCTCTGTGGGGATGGGA < 41bp 0.775647467668994 0.569986230915302 NA NA prediction 0.411322473507383 Functional Loss - SAMD4B ENSG00000179134 CDS Human protein_coding chr19:39871258 chr19:39871257 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11067 0 0 1 0 1 SAMD4B chr19:39871227 3'AG 39871227 Downstream 31bp 10455 chr19 14157363 14157363 1 + T C UCEC 14157364 + 14157344 14157384 41 TAGTGGACTGGGCTCGAGATGGGGACCCCCTGGAGAAACTC TAGTGGACTGGGCTCGAGACGGGGACCCCCTGGAGAAACTC < 41bp 0.705659609973507 0.496366403873656 NA NA prediction 0.411319219947013 Functional Loss - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14157364 chr19:14157363 synonymous SNV . 0 20 hm7G_associated_SNPs_11068 0 0 0 0 1 IL27RA chr19:14157430 5'GT 14157430 Upstream 68bp 10456 chr12 8196362 8196362 1 + T C GBM 8196363 + 8196343 8196383 41 GAAGACACCCTCCAGATGATGATGTAAGTTCCCAGCTCATG GAAGACACCCTCCAGATGACGATGTAAGTTCCCAGCTCATG < 41bp 0.705647976282176 0.49444524354099 NA NA prediction 0.411295952564351 Functional Loss - FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196363 chr12:8196362 synonymous SNV . 0 20 hm7G_associated_SNPs_11070 0 0 0 0 1 FOXJ2 chr12:8196365 5'GT 8196365 Upstream 4bp 10457 chr19 45284515 45284515 1 + T C LUSC 45284516 + 45284496 45284536 41 TCCTGGGCACCTGCCACCCTGTGGAACCAGGCTGCACAGCC TCCTGGGCACCTGCCACCCCGTGGAACCAGGCTGCACAGCC < 41bp 0.706221564271016 0.500578846908934 NA NA prediction 0.411285434724164 Functional Loss - CBLC ENSG00000142273 CDS Human protein_coding chr19:45284516 chr19:45284515 synonymous SNV . 0 20 hm7G_associated_SNPs_11071 0 0 0 0 1 CBLC chr19:45284464 3'AG 45284464 Downstream 52bp 10458 chr2 69297841 69297841 1 + T C READ 69297842 + 69297822 69297862 41 CCAGGAGGAGACACTTACATGCATGAAGGATTTGAAAGGGT CCAGGAGGAGACACTTACACGCATGAAGGATTTGAAAGGGT < 41bp 0.711547723781838 0.505906342744304 NA NA prediction 0.411282762075069 Functional Loss - ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69297842 chr2:69297841 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11072 0 0 0 0 1 ANTXR1 chr2:69297779 3'AG 69297779 Downstream 63bp 10459 chr9 113562667 113562667 1 + T G SKCM 113562668 + 113562648 113562688 41 AATGAGTTCCTCCGCAGCATGTCCCCTCACACCGTGTGCAG AATGAGTTCCTCCGCAGCAGGTCCCCTCACACCGTGTGCAG < 41bp 0.70563142753632 0.377438566773259 NA NA prediction 0.41126285507264 Functional Loss - MUSK ENSG00000030304 CDS Human protein_coding chr9:113562668 chr9:113562667 nonsynonymous SNV 0.959 1 20 hm7G_associated_SNPs_11073 0 0 0 0 1 MUSK chr9:113562586 3'AG 113562586 Downstream 82bp 10460 chr16 71663270 71663270 1 + T C rs202067406 71663271 + 71663251 71663291 41 GTATGCTTTTTGGTTATAGTGAACCCCCTTCGGAGAGATAT GTATGCTTTTTGGTTATAGCGAACCCCCTTCGGAGAGATAT < 41bp 0.732522185951612 0.526912020110624 NA NA prediction 0.411220331681976 Functional Loss - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71663271 chr16:71663270 nonsynonymous SNV 0.251 0 20 hm7G_associated_SNPs_11077 0 0 0 0 1 MARVELD3 chr16:71663270 3'AG 71663270 Downstream 1bp 10461 chr3 195400728 195400728 1 + A G ACC 195400729 + 195400709 195400749 41 CCAGGATCAGATTGTGCCCAGCCTGTACGCCTGTGGGGAGG CCAGGATCAGATTGTGCCCGGCCTGTACGCCTGTGGGGAGG < 41bp 0.764118533559402 0.558508388624031 NA NA prediction 0.411220289870742 Functional Loss - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195400729 chr3:195400728 . . 0 20 hm7G_associated_SNPs_11078 0 0 1 0 1 SDHAP2 chr3:195400689 3'AG 195400689 Downstream 40bp 10462 chr6 158296190 158296190 1 + T C UCEC 158296191 + 158296171 158296211 41 CTCAGGCCAGTTCGTCGGCTGCCAGCAACAATCACCAGGTA CTCAGGCCAGTTCGTCGGCCGCCAGCAACAATCACCAGGTA < 41bp 0.721466292514857 0.51585890183584 NA NA prediction 0.411214781358033 Functional Loss - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158296191 chr6:158296190 synonymous SNV . 0 20 hm7G_associated_SNPs_11079 0 0 1 0 1 SNX9 chr6:158296208 5'GT 158296208 Upstream 19bp 10463 chr22 51121797 51121797 1 + T C UCEC 51121798 + 51121778 51121818 41 CTCGTGTCCTGCTCTTCCGTGGAGCTAACAGGGATGTCCGC CTCGTGTCCTGCTCTTCCGCGGAGCTAACAGGGATGTCCGC < 41bp 0.739430060832612 0.533824107899321 NA NA prediction 0.411211905866582 Functional Loss - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51121798 chr22:51121797 synonymous SNV . 0 20 hm7G_associated_SNPs_11080 0 0 0 0 2 SHANK3 chr22:51121768 3'AG 51121768 Downstream 30bp 10464 chr22 51121797 51121797 1 + T C UCEC 51121798 + 51121778 51121818 41 CTCGTGTCCTGCTCTTCCGTGGAGCTAACAGGGATGTCCGC CTCGTGTCCTGCTCTTCCGCGGAGCTAACAGGGATGTCCGC < 41bp 0.739430060832612 0.533824107899321 NA NA prediction 0.411211905866582 Functional Loss - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51121798 chr22:51121797 synonymous SNV . 0 20 hm7G_associated_SNPs_11080 0 0 0 0 2 SHANK3 chr22:51121845 5'GT 51121845 Upstream 49bp 10465 chr20 10025122 10025122 1 + T G STAD 10025123 + 10025103 10025143 41 GCATATTGGAAAGAGGAGGTGAAGTGAATGCATTTGACAAC GCATATTGGAAAGAGGAGGGGAAGTGAATGCATTTGACAAC < 41bp 0.905888635179985 0.700284993229444 NA NA prediction 0.411207283901082 Functional Loss - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10025123 chr20:10025122 synonymous SNV . 0 20 hm7G_associated_SNPs_11081 0 0 0 0 2 ANKEF1 chr20:10025042 3'AG 10025042 Downstream 81bp 10466 chr20 10025122 10025122 1 + T G STAD 10025123 + 10025103 10025143 41 GCATATTGGAAAGAGGAGGTGAAGTGAATGCATTTGACAAC GCATATTGGAAAGAGGAGGGGAAGTGAATGCATTTGACAAC < 41bp 0.905888635179985 0.700284993229444 NA NA prediction 0.411207283901082 Functional Loss - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10025123 chr20:10025122 synonymous SNV . 0 20 hm7G_associated_SNPs_11081 0 0 0 0 2 ANKEF1 chr20:10025191 5'GT 10025191 Upstream 70bp 10467 chr22 36124911 36124911 1 + A G COAD 36124912 + 36124892 36124932 41 CCACCAGCACCAGCAAGAAAGGGGAGACAGGCCCCGGGAAG CCACCAGCACCAGCAAGAAGGGGGAGACAGGCCCCGGGAAG < 41bp 0.723645890145143 0.5180474506334 NA NA prediction 0.411196879023487 Functional Loss - APOL5 ENSG00000128313 CDS Human protein_coding chr22:36124912 chr22:36124911 nonsynonymous SNV 0.846 1 20 hm7G_associated_SNPs_11082 0 0 0 0 1 APOL5 chr22:36124951 5'GT 36124951 Upstream 41bp 10468 chr16 57092030 57092030 1 + T G COAD 57092031 + 57092011 57092051 41 AGATGCCTTCTGGAATGTCTGCCGCAGGTGCCCATCTCCGG AGATGCCTTCTGGAATGTCGGCCGCAGGTGCCCATCTCCGG < 41bp 0.705598166963193 0.361369064681231 NA NA prediction 0.411196333926386 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57092031 chr16:57092030 nonsynonymous SNV 0.153 3 20 hm7G_associated_SNPs_11083 0 0 0 0 2 NLRC5 chr16:57091977 3'AG 57091977 Downstream 54bp 10469 chr16 57092030 57092030 1 + T G COAD 57092031 + 57092011 57092051 41 AGATGCCTTCTGGAATGTCTGCCGCAGGTGCCCATCTCCGG AGATGCCTTCTGGAATGTCGGCCGCAGGTGCCCATCTCCGG < 41bp 0.705598166963193 0.361369064681231 NA NA prediction 0.411196333926386 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57092031 chr16:57092030 nonsynonymous SNV 0.153 3 20 hm7G_associated_SNPs_11083 0 0 0 0 2 NLRC5 chr16:57092060 5'GT 57092060 Upstream 31bp 10470 chr16 57758704 57758704 1 + A G LIHC 57758705 + 57758685 57758725 41 TTCGGACCCCGAGTCAAGAAGCTCACTCTGAGCAGTGCAGA TTCGGACCCCGAGTCAAGAGGCTCACTCTGAGCAGTGCAGA < 41bp 0.765201342365164 0.559604334295846 NA NA prediction 0.411194016138636 Functional Loss - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57758705 chr16:57758704 nonsynonymous SNV 0.583 2 20 hm7G_associated_SNPs_11084 0 0 0 0 1 DRC7 chr16:57758747 5'GT 57758747 Upstream 44bp 10471 chr12 58009720 58009720 1 + A G UCEC 58009721 + 58009701 58009741 41 ATCCAGCGCTATGTCCTGCAGGCTGCAGACCCTGCTATCAG ATCCAGCGCTATGTCCTGCGGGCTGCAGACCCTGCTATCAG < 41bp 0.735638425395218 0.530052067714303 NA NA prediction 0.411172715361829 Functional Loss - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58009721 chr12:58009720 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_11086 0 0 0 0 1 ARHGEF25 chr12:58009800 5'GT 58009800 Upstream 81bp 10472 chr12 968489 968489 1 + T C rs2286006 968490 + 968470 968510 41 TAGAATTAGCAGAAGAAGATGATGGAGAAAAAATAGCCATA TAGAATTAGCAGAAGAAGACGATGGAGAAAAAATAGCCATA < 41bp 0.725928499106085 0.52034763417554 NA NA prediction 0.411161729861089 Functional Loss - WNK1 ENSG00000060237 CDS Human protein_coding chr12:968490 chr12:968489 synonymous SNV . 0 20 hm7G_associated_SNPs_11087 3 0 1 0 1 WNK1 chr12:968411 3'AG 968411 Downstream 79bp 10473 chr3 154862237 154862237 1 + T G LUSC 154862238 + 154862218 154862258 41 CCGAGACAAAAAAGAGAGCTGAAGAAAAGGTAAAGAGCAGA CCGAGACAAAAAAGAGAGCGGAAGAAAAGGTAAAGAGCAGA < 41bp 0.892521902035785 0.686941325306849 NA NA prediction 0.411161153457873 Functional Loss - MME ENSG00000196549 CDS Human protein_coding chr3:154862238 chr3:154862237 synonymous SNV . 0 20 hm7G_associated_SNPs_11088 0 0 0 0 1 MME chr3:154862148 3'AG 154862148 Downstream 90bp 10474 chr8 22865525 22865525 1 + T C UCEC 22865526 + 22865506 22865546 41 ATGTGACCTTCATCCTGGATGATGGCACCATCAGCGCCCAC ATGTGACCTTCATCCTGGACGATGGCACCATCAGCGCCCAC < 41bp 0.751046954764772 0.545472540210345 NA NA prediction 0.411148829108853 Functional Loss - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865526 chr8:22865525 synonymous SNV . 0 20 hm7G_associated_SNPs_11090 0 0 1 0 2 RHOBTB2 chr8:22865506 3'AG 22865506 Downstream 20bp 10475 chr8 22865525 22865525 1 + T C UCEC 22865526 + 22865506 22865546 41 ATGTGACCTTCATCCTGGATGATGGCACCATCAGCGCCCAC ATGTGACCTTCATCCTGGACGATGGCACCATCAGCGCCCAC < 41bp 0.751046954764772 0.545472540210345 NA NA prediction 0.411148829108853 Functional Loss - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865526 chr8:22865525 synonymous SNV . 0 20 hm7G_associated_SNPs_11090 0 0 1 0 2 RHOBTB2 chr8:22865624 5'GT 22865624 Upstream 100bp 10476 chr14 76186081 76186081 1 + T C LIHC 76186082 + 76186062 76186102 41 TATTAATTTGTTTTAGTTGTGACGATCCAGAAGTGGAGGAT TATTAATTTGTTTTAGTTGCGACGATCCAGAAGTGGAGGAT < 41bp 0.733473567015341 0.527909854972544 NA NA prediction 0.411127424085594 Functional Loss - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76186082 chr14:76186081 synonymous SNV . 0 20 hm7G_associated_SNPs_11091 0 0 1 0 2 TTLL5 chr14:76186078 3'AG 76186078 Downstream 4bp 10477 chr14 76186081 76186081 1 + T C LIHC 76186082 + 76186062 76186102 41 TATTAATTTGTTTTAGTTGTGACGATCCAGAAGTGGAGGAT TATTAATTTGTTTTAGTTGCGACGATCCAGAAGTGGAGGAT < 41bp 0.733473567015341 0.527909854972544 NA NA prediction 0.411127424085594 Functional Loss - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76186082 chr14:76186081 synonymous SNV . 0 20 hm7G_associated_SNPs_11091 0 0 1 0 2 TTLL5 chr14:76186169 5'GT 76186169 Upstream 89bp 10478 chr16 68729170 68729170 1 + T C LIHC 68729171 + 68729151 68729191 41 CTTGCAGTCCTCCTGCTGGTGCTGCTTTTGTTGGTGAGAAA CTTGCAGTCCTCCTGCTGGCGCTGCTTTTGTTGGTGAGAAA < 41bp 0.758454692012416 0.552891311015464 NA NA prediction 0.411126761993903 Functional Loss - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68729171 chr16:68729170 nonsynonymous SNV 0.499 0 20 hm7G_associated_SNPs_11092 0 0 0 0 1 CDH3 chr16:68729158 3'AG 68729158 Downstream 13bp 10479 chr10 30726158 30726158 1 + T G rs143510730 30726159 + 30726139 30726179 41 TAGGTAGCCACATCTTGTTTGCAGATAAGAAAGGAAGCTAA TAGGTAGCCACATCTTGTTGGCAGATAAGAAAGGAAGCTAA < 41bp 0.861129263028135 0.655584637081159 NA NA prediction 0.411089251893951 Functional Loss - MAP3K8 ENSG00000107968 UTR5 Human protein_coding chr10:30726159 chr10:30726158 . . 0 20 hm7G_associated_SNPs_11094 0 0 1 0 1 MAP3K8 chr10:30726105 3'AG 30726105 Downstream 54bp 10480 chr14 21463375 21463375 1 + A G GBM 21463376 + 21463356 21463396 41 CAGCCTTCTCATGGATGCCAGGGATCTGGTCCTTAAGGTAA CAGCCTTCTCATGGATGCCGGGGATCTGGTCCTTAAGGTAA < 41bp 0.718619854432155 0.513081142096221 NA NA prediction 0.411077424671868 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21463376 chr14:21463375 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_11095 0 0 1 0 2 METTL17 chr14:21463324 3'AG 21463324 Downstream 52bp 10481 chr14 21463375 21463375 1 + A G GBM 21463376 + 21463356 21463396 41 CAGCCTTCTCATGGATGCCAGGGATCTGGTCCTTAAGGTAA CAGCCTTCTCATGGATGCCGGGGATCTGGTCCTTAAGGTAA < 41bp 0.718619854432155 0.513081142096221 NA NA prediction 0.411077424671868 Functional Loss - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21463376 chr14:21463375 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_11095 0 0 1 0 2 METTL17 chr14:21463392 5'GT 21463392 Upstream 18bp 10482 chr12 3649905 3649905 1 + T C UCEC 3649906 + 3649886 3649926 41 CTGCTGAACCCAGAGGAGATGACCTCGAGAGATTATTACTT CTGCTGAACCCAGAGGAGACGACCTCGAGAGATTATTACTT < 41bp 0.705534895090475 0.492623142078787 NA NA prediction 0.41106979018095 Functional Loss - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649906 chr12:3649905 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11096 0 0 0 1 1 PRMT8 chr12:3649957 5'GT 3649957 Upstream 53bp 10483 chr16 19590444 19590444 1 + T C rs11866050 19590445 + 19590425 19590465 41 TGGAGGAGCTGGATGACTTTGAGGAGGTGAGCAAGTCATTT TGGAGGAGCTGGATGACTTCGAGGAGGTGAGCAAGTCATTT < 41bp 0.722229200242196 0.516704015760202 NA NA prediction 0.411050368963989 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19590445 chr16:19590444 synonymous SNV 1.000 0 20 hm7G_associated_SNPs_11097 0 0 0 0 2 C16orf62 chr16:19590374 3'AG 19590374 Downstream 71bp 10484 chr16 19590444 19590444 1 + T C rs11866050 19590445 + 19590425 19590465 41 TGGAGGAGCTGGATGACTTTGAGGAGGTGAGCAAGTCATTT TGGAGGAGCTGGATGACTTCGAGGAGGTGAGCAAGTCATTT < 41bp 0.722229200242196 0.516704015760202 NA NA prediction 0.411050368963989 Functional Loss - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19590445 chr16:19590444 synonymous SNV 1.000 0 20 hm7G_associated_SNPs_11097 0 0 0 0 2 C16orf62 chr16:19590450 5'GT 19590450 Upstream 7bp 10485 chrX 155252782 155252782 1 + A G LUAD 155252783 + 155252763 155252803 41 TGCCAACGACCTCATGTACAGTGCCGACCTGGGCCCCGGCA TGCCAACGACCTCATGTACGGTGCCGACCTGGGCCCCGGCA < 41bp 0.717037669559539 0.511520687313249 NA NA prediction 0.41103396449258 Functional Loss - WASIR1;DDX11L16 ENSG00000182484;ENSG00000270726 ncRNA_exonic Human other chrX:155252783 chrX:155252782 . . 0 20 hm7G_associated_SNPs_11098 0 0 1 0 1 WASIR1;DDX11L16 chrX:155252878 5'GT 155252878 Upstream 97bp 10486 chr1 179348612 179348612 1 + T C LUAD 179348613 + 179348593 179348633 41 TTTCAGGTTTGGAGTGTTATGATGAGTGAGTACTATGATAT TTTCAGGTTTGGAGTGTTACGATGAGTGAGTACTATGATAT < 41bp 0.70551204138668 0.496960648769271 NA NA prediction 0.41102408277336 Functional Loss - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179348613 chr1:179348612 synonymous SNV . 0 20 hm7G_associated_SNPs_11099 0 0 0 5 2 AXDND1 chr1:179348532 3'AG 179348532 Downstream 81bp 10487 chr1 179348612 179348612 1 + T C LUAD 179348613 + 179348593 179348633 41 TTTCAGGTTTGGAGTGTTATGATGAGTGAGTACTATGATAT TTTCAGGTTTGGAGTGTTACGATGAGTGAGTACTATGATAT < 41bp 0.70551204138668 0.496960648769271 NA NA prediction 0.41102408277336 Functional Loss - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179348613 chr1:179348612 synonymous SNV . 0 20 hm7G_associated_SNPs_11099 0 0 0 5 2 AXDND1 chr1:179348617 5'GT 179348617 Upstream 6bp 10488 chr19 6919566 6919566 1 + T C GBM 6919567 + 6919547 6919587 41 GGAAACCTGCAGAGACCACTGGTGTGGCTTTTGTCTCCTTT GGAAACCTGCAGAGACCACCGGTGTGGCTTTTGTCTCCTTT < 41bp 0.724003859552375 0.518491857889675 NA NA prediction 0.411024003325401 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6919567 chr19:6919566 synonymous SNV . 0 20 hm7G_associated_SNPs_11100 0 0 0 0 1 ADGRE1 chr19:6919559 3'AG 6919559 Downstream 8bp 10489 chr17 72308264 72308264 1 + A G STAD 72308265 + 72308245 72308285 41 CCGATGAGGAGCTGGCCGTAGACCTGGAGGCGCTGGTCAGC CCGATGAGGAGCTGGCCGTGGACCTGGAGGCGCTGGTCAGC < 41bp 0.750013016178756 0.544503569613798 NA NA prediction 0.411018893129915 Functional Loss - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72308265 chr17:72308264 synonymous SNV . 0 20 hm7G_associated_SNPs_11101 0 0 0 0 1 DNAI2 chr17:72308214 3'AG 72308214 Downstream 51bp 10490 chr6 34804043 34804043 1 + T C rs374245786 34804044 + 34804024 34804064 41 GCCAGTACTTTGAGAAATTTGATGTGAAAGAGTCCTCCTAC GCCAGTACTTTGAGAAATTCGATGTGAAAGAGTCCTCCTAC < 41bp 0.725861296203356 0.520363257769786 NA NA prediction 0.410996076867141 Functional Loss - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34804044 chr6:34804043 synonymous SNV . 0 20 hm7G_associated_SNPs_11102 0 0 1 0 1 UHRF1BP1 chr6:34804125 5'GT 34804125 Upstream 83bp 10491 chr10 43318705 43318705 1 + T G GBM 43318706 + 43318686 43318726 41 AGCTTTGAGGATAAGCTGCTGATGAGCGGTGAGTGTCTTGA AGCTTTGAGGATAAGCTGCGGATGAGCGGTGAGTGTCTTGA < 41bp 0.900437693806967 0.694949767466837 NA NA prediction 0.41097585268026 Functional Loss - BMS1 ENSG00000165733 CDS Human protein_coding chr10:43318706 chr10:43318705 nonsynonymous SNV 0.919 4 20 hm7G_associated_SNPs_11103 0 0 1 0 1 BMS1 chr10:43318713 5'GT 43318713 Upstream 9bp 10492 chr16 89180872 89180872 1 + T C SKCM 89180873 + 89180853 89180893 41 ATGGCTCTGTCCGGGCCCCTGACCACTGCCGTGCGCCTGCC ATGGCTCTGTCCGGGCCCCCGACCACTGCCGTGCGCCTGCC < 41bp 0.72448406092306 0.519016995970894 NA NA prediction 0.410934129904331 Functional Loss - ACSF3 ENSG00000176715 CDS Human protein_coding chr16:89180873 chr16:89180872 nonsynonymous SNV 0.009 4 20 hm7G_associated_SNPs_11105 0 0 1 0 1 ACSF3 chr16:89180895 5'GT 89180895 Upstream 24bp 10493 chr14 76906003 76906003 1 + T C UCEC 76906004 + 76905984 76906024 41 CGCCATCCCCAAGCGCCTGTGCCTCGTGTGCGGGGACATTG CGCCATCCCCAAGCGCCTGCGCCTCGTGTGCGGGGACATTG < 41bp 0.728283805112831 0.522824173313331 NA NA prediction 0.410919263599 Functional Loss - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76906004 chr14:76906003 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11106 0 0 0 0 1 ESRRB chr14:76906093 5'GT 76906093 Upstream 91bp 10494 chr18 44030306 44030306 1 + T C SKCM 44030307 + 44030287 44030327 41 ACCCTCAGCTTCACTTCCTTGCTCTCCAGGGACTAAATCCC ACCCTCAGCTTCACTTCCTCGCTCTCCAGGGACTAAATCCC < 41bp 0.740115961439739 0.534658978346767 NA NA prediction 0.410913966185944 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44030307 chr18:44030306 synonymous SNV . 0 20 hm7G_associated_SNPs_11107 0 0 0 0 2 RNF165 chr18:44030259 3'AG 44030259 Downstream 48bp 10495 chr18 44030306 44030306 1 + T C SKCM 44030307 + 44030287 44030327 41 ACCCTCAGCTTCACTTCCTTGCTCTCCAGGGACTAAATCCC ACCCTCAGCTTCACTTCCTCGCTCTCCAGGGACTAAATCCC < 41bp 0.740115961439739 0.534658978346767 NA NA prediction 0.410913966185944 Functional Loss - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44030307 chr18:44030306 synonymous SNV . 0 20 hm7G_associated_SNPs_11107 0 0 0 0 2 RNF165 chr18:44030363 5'GT 44030363 Upstream 58bp 10496 chr11 119058747 119058747 1 + A G COAD 119058748 + 119058728 119058768 41 CCCTGGCTGCACCCCTGGCAGAGGGCTGGGCACTGCCCACC CCCTGGCTGCACCCCTGGCGGAGGGCTGGGCACTGCCCACC < 41bp 0.767834818496479 0.562382675435456 NA NA prediction 0.410904286122048 Functional Loss - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119058748 chr11:119058747 synonymous SNV . 0 20 hm7G_associated_SNPs_11108 0 0 0 0 1 PDZD3 chr11:119058649 3'AG 119058649 Downstream 99bp 10497 chr3 12849778 12849778 1 + A G UCEC 12849779 + 12849759 12849799 41 AGTGCCATTGCCCAGCAGGAGGATGTGGCTGTGCAGCTGGA AGTGCCATTGCCCAGCAGGGGGATGTGGCTGTGCAGCTGGA < 41bp 0.734634486714359 0.52918594117744 NA NA prediction 0.410897091073839 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12849779 chr3:12849778 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_11109 0 0 0 0 2 CAND2 chr3:12849709 3'AG 12849709 Downstream 70bp 10498 chr3 12849778 12849778 1 + A G UCEC 12849779 + 12849759 12849799 41 AGTGCCATTGCCCAGCAGGAGGATGTGGCTGTGCAGCTGGA AGTGCCATTGCCCAGCAGGGGGATGTGGCTGTGCAGCTGGA < 41bp 0.734634486714359 0.52918594117744 NA NA prediction 0.410897091073839 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12849779 chr3:12849778 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_11109 0 0 0 0 2 CAND2 chr3:12849832 5'GT 12849832 Upstream 55bp 10499 chr19 36583692 36583692 1 + A G rs61747277 36583693 + 36583673 36583713 41 CAGCAGCACACAAATGACAAGAAGCGGAGTGGCCACCCCAG CAGCAGCACACAAATGACAGGAAGCGGAGTGGCCACCCCAG < 41bp 0.745383895359855 0.539938185800625 NA NA prediction 0.41089141911846 Functional Loss - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36583693 chr19:36583692 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_11110 1 0 1 0 1 WDR62 chr19:36583713 5'GT 36583713 Upstream 22bp 10500 chr9 101570336 101570336 1 + A G rs1137654 101570337 + 101570317 101570357 41 CTGCACCGCCGCCTGCCCGAGCGCTGGAACCCGCTGTGAGT CTGCACCGCCGCCTGCCCGGGCGCTGGAACCCGCTGTGAGT < 41bp 0.705425680987692 0.489560900708223 NA NA prediction 0.410851361975384 Functional Loss - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101570337 chr9:101570336 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_11111 0 0 0 0 1 GALNT12 chr9:101570351 5'GT 101570351 Upstream 16bp 10501 chr7 138872193 138872193 1 + T C COAD 138872194 + 138872174 138872214 41 CCAAAGCTTTTGATGTCCTTGAGAGGCTGGATCCTAACCCT CCAAAGCTTTTGATGTCCTCGAGAGGCTGGATCCTAACCCT < 41bp 0.71279641155014 0.507376416652919 NA NA prediction 0.410839989794441 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138872194 chr7:138872193 synonymous SNV . 0 20 hm7G_associated_SNPs_11112 0 0 1 0 2 TTC26 chr7:138872152 3'AG 138872152 Downstream 42bp 10502 chr7 138872193 138872193 1 + T C COAD 138872194 + 138872174 138872214 41 CCAAAGCTTTTGATGTCCTTGAGAGGCTGGATCCTAACCCT CCAAAGCTTTTGATGTCCTCGAGAGGCTGGATCCTAACCCT < 41bp 0.71279641155014 0.507376416652919 NA NA prediction 0.410839989794441 Functional Loss - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138872194 chr7:138872193 synonymous SNV . 0 20 hm7G_associated_SNPs_11112 0 0 1 0 2 TTC26 chr7:138872285 5'GT 138872285 Upstream 93bp 10503 chr16 570557 570557 1 + T C rs11537754 570558 + 570538 570578 41 TCTTCTCCACAGCCTTCTCTGAGTCCCTGGCTGCAGAGATC TCTTCTCCACAGCCTTCTCCGAGTCCCTGGCTGCAGAGATC < 41bp 0.705383632449761 0.494136914491015 NA NA prediction 0.410767264899521 Functional Loss - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:570558 chr16:570557 synonymous SNV . 0 20 hm7G_associated_SNPs_11115 0 0 1 0 2 RAB11FIP3 chr16:570459 3'AG 570459 Downstream 99bp 10504 chr16 570557 570557 1 + T C rs11537754 570558 + 570538 570578 41 TCTTCTCCACAGCCTTCTCTGAGTCCCTGGCTGCAGAGATC TCTTCTCCACAGCCTTCTCCGAGTCCCTGGCTGCAGAGATC < 41bp 0.705383632449761 0.494136914491015 NA NA prediction 0.410767264899521 Functional Loss - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:570558 chr16:570557 synonymous SNV . 0 20 hm7G_associated_SNPs_11115 0 0 1 0 2 RAB11FIP3 chr16:570599 5'GT 570599 Upstream 43bp 10505 chrX 134987510 134987510 1 + T C LUSC 134987511 + 134987491 134987531 41 CCACCACAGCTTGTTCATATGGCTGCAGCTGGTATTCCATC CCACCACAGCTTGTTCATACGGCTGCAGCTGGTATTCCATC < 41bp 0.707657561767052 0.50228222019561 NA NA prediction 0.410750683142885 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134987511 chrX:134987510 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_11117 0 0 1 0 2 SAGE1 chrX:134987411 3'AG 134987411 Downstream 100bp 10506 chrX 134987510 134987510 1 + T C LUSC 134987511 + 134987491 134987531 41 CCACCACAGCTTGTTCATATGGCTGCAGCTGGTATTCCATC CCACCACAGCTTGTTCATACGGCTGCAGCTGGTATTCCATC < 41bp 0.707657561767052 0.50228222019561 NA NA prediction 0.410750683142885 Functional Loss - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134987511 chrX:134987510 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_11117 0 0 1 0 2 SAGE1 chrX:134987551 5'GT 134987551 Upstream 42bp 10507 chr7 94039100 94039100 1 + T C LUAD 94039101 + 94039081 94039121 41 GTATTCCTGGCCCTGTTGGTGCTGCCGGTGCTACTGGTGCC GTATTCCTGGCCCTGTTGGCGCTGCCGGTGCTACTGGTGCC < 41bp 0.749558793437436 0.544186657937467 NA NA prediction 0.410744270999937 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94039101 chr7:94039100 synonymous SNV . 0 20 hm7G_associated_SNPs_11119 0 0 0 0 2 COL1A2 chr7:94039035 3'AG 94039035 Downstream 66bp 10508 chr7 94039100 94039100 1 + T C LUAD 94039101 + 94039081 94039121 41 GTATTCCTGGCCCTGTTGGTGCTGCCGGTGCTACTGGTGCC GTATTCCTGGCCCTGTTGGCGCTGCCGGTGCTACTGGTGCC < 41bp 0.749558793437436 0.544186657937467 NA NA prediction 0.410744270999937 Functional Loss - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94039101 chr7:94039100 synonymous SNV . 0 20 hm7G_associated_SNPs_11119 0 0 0 0 2 COL1A2 chr7:94039133 5'GT 94039133 Upstream 34bp 10509 chr3 52014907 52014907 1 + T G rs34149506 52014908 + 52014888 52014928 41 ATCCTGGCTCGAGAGTCACTGCGGCAGCTCCGCCACCTGCC ATCCTGGCTCGAGAGTCACGGCGGCAGCTCCGCCACCTGCC < 41bp 0.705366715379063 0.374600597502233 NA NA prediction 0.410733430758126 Functional Loss - ABHD14A ENSG00000248487 CDS Human protein_coding chr3:52014908 chr3:52014907 nonsynonymous SNV 0.826 2 20 hm7G_associated_SNPs_11120 0 0 1 0 1 ABHD14A chr3:52014852 3'AG 52014852 Downstream 56bp 10510 chr2 120723115 120723115 1 + T C OV 120723116 + 120723096 120723136 41 TCAGATCCAGTACATAGCCTGGCCTGACCATGGAGTCCCTG TCAGATCCAGTACATAGCCCGGCCTGACCATGGAGTCCCTG < 41bp 0.720122815067774 0.514757631981873 NA NA prediction 0.4107303661718 Functional Loss - PTPN4 ENSG00000088179 CDS Human protein_coding chr2:120723116 chr2:120723115 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11121 0 0 1 0 1 PTPN4 chr2:120723073 3'AG 120723073 Downstream 43bp 10511 chr11 82875277 82875277 1 + T C COAD 82875278 + 82875258 82875298 41 CCTTCAACACCTGGTACAGTGGTCAGTTCCCCTAGCATCTC CCTTCAACACCTGGTACAGCGGTCAGTTCCCCTAGCATCTC < 41bp 0.725199982618573 0.519854727166116 NA NA prediction 0.410690510904913 Functional Loss - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82875278 chr11:82875277 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_11122 0 0 0 0 1 PCF11 chr11:82875249 3'AG 82875249 Downstream 29bp 10512 chr8 30924680 30924680 1 + T C LUAD 30924681 + 30924661 30924701 41 CTGAGGACCAGAAACTGTATGCAGCCACTGATGCTTATGTA CTGAGGACCAGAAACTGTACGCAGCCACTGATGCTTATGTA < 41bp 0.724087662619151 0.518762827916842 NA NA prediction 0.410649669404618 Functional Loss - WRN ENSG00000165392 CDS Human protein_coding chr8:30924681 chr8:30924680 synonymous SNV . 0 20 hm7G_associated_SNPs_11124 0 0 1 0 1 WRN chr8:30924698 5'GT 30924698 Upstream 19bp 10513 chr6 168443341 168443341 1 + T C rs58648170 168443342 + 168443322 168443362 41 GGGCTTTGTTGGAGCACCGTGGCCATGCCCCGTACCGGAAC GGGCTTTGTTGGAGCACCGCGGCCATGCCCCGTACCGGAAC < 41bp 0.731470792969827 0.526145988848752 NA NA prediction 0.410649608242149 Functional Loss - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168443342 chr6:168443341 synonymous SNV . 0 20 hm7G_associated_SNPs_11125 0 0 0 0 1 KIF25 chr6:168443396 5'GT 168443396 Upstream 56bp 10514 chr17 76130641 76130641 1 + A G UCEC 76130642 + 76130622 76130662 41 AAGTACTCACAGGACAACAAGGAGGTGTCAGGCAACTGCAT AAGTACTCACAGGACAACAGGGAGGTGTCAGGCAACTGCAT < 41bp 0.756418651129615 0.551100938779239 NA NA prediction 0.410635424700752 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76130642 chr17:76130641 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11126 0 0 0 0 1 TMC8 chr17:76130645 5'GT 76130645 Upstream 5bp 10515 chr22 26702074 26702074 1 + T C LIHC 26702075 + 26702055 26702095 41 GAGGGCCAGAAGCTGCACCTGCACTTTGAGAGGCTGTTGCT GAGGGCCAGAAGCTGCACCCGCACTTTGAGAGGCTGTTGCT < 41bp 0.757848365577986 0.552550975541236 NA NA prediction 0.4105947800735 Functional Loss - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26702075 chr22:26702074 nonsynonymous SNV 0.808 4 20 hm7G_associated_SNPs_11128 0 0 0 0 1 SEZ6L chr22:26702110 5'GT 26702110 Upstream 37bp 10516 chr1 15771225 15771225 1 + T C OV 15771226 + 15771206 15771246 41 TGGTGTGCGCTGGGGGCGATGGCGTCATCTCAGCCTGCAAT TGGTGTGCGCTGGGGGCGACGGCGTCATCTCAGCCTGCAAT < 41bp 0.72775816882555 0.52246551248479 NA NA prediction 0.410585312681521 Functional Loss - CTRC ENSG00000162438 CDS Human protein_coding chr1:15771226 chr1:15771225 synonymous SNV . 0 20 hm7G_associated_SNPs_11129 0 0 0 0 1 CTRC chr1:15771246 5'GT 15771246 Upstream 22bp 10517 chr11 67046971 67046971 1 + A G rs139639168 67046972 + 67046952 67046992 41 GACTCATACATCATGAAGGAGCTGCTGGCCTGCTCGCATGT GACTCATACATCATGAAGGGGCTGCTGGCCTGCTCGCATGT < 41bp 0.764161706055037 0.558873239241593 NA NA prediction 0.410576933626887 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67046972 chr11:67046971 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_11130 0 0 1 0 2 GRK2 chr11:67046889 3'AG 67046889 Downstream 83bp 10518 chr11 67046971 67046971 1 + A G rs139639168 67046972 + 67046952 67046992 41 GACTCATACATCATGAAGGAGCTGCTGGCCTGCTCGCATGT GACTCATACATCATGAAGGGGCTGCTGGCCTGCTCGCATGT < 41bp 0.764161706055037 0.558873239241593 NA NA prediction 0.410576933626887 Functional Loss - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67046972 chr11:67046971 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_11130 0 0 1 0 2 GRK2 chr11:67046990 5'GT 67046990 Upstream 20bp 10519 chr11 829426 829426 1 + A G LIHC 829427 + 829407 829447 41 ACTCCCGAGGAGACCTTTGAGTCGGGCGGGCTCGACGTGCA ACTCCCGAGGAGACCTTTGGGTCGGGCGGGCTCGACGTGCA < 41bp 0.705275292681252 0.481324409629197 NA NA prediction 0.410550585362505 Functional Loss - CRACR2B ENSG00000177685 CDS Human protein_coding chr11:829427 chr11:829426 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11131 0 0 1 0 1 CRACR2B chr11:829360 3'AG 829360 Downstream 67bp 10520 chr10 72630885 72630885 1 + T C STAD 72630886 + 72630866 72630906 41 CTCATGGTGTAATAGATCCTGTCCCTGAAGTGGCCAAGGTA CTCATGGTGTAATAGATCCCGTCCCTGAAGTGGCCAAGGTA < 41bp 0.719393906788509 0.514154613227698 NA NA prediction 0.410478587121624 Functional Loss - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72630886 chr10:72630885 synonymous SNV . 0 20 hm7G_associated_SNPs_11132 0 0 1 0 2 SGPL1 chr10:72630805 3'AG 72630805 Downstream 81bp 10521 chr10 72630885 72630885 1 + T C STAD 72630886 + 72630866 72630906 41 CTCATGGTGTAATAGATCCTGTCCCTGAAGTGGCCAAGGTA CTCATGGTGTAATAGATCCCGTCCCTGAAGTGGCCAAGGTA < 41bp 0.719393906788509 0.514154613227698 NA NA prediction 0.410478587121624 Functional Loss - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72630886 chr10:72630885 synonymous SNV . 0 20 hm7G_associated_SNPs_11132 0 0 1 0 2 SGPL1 chr10:72630903 5'GT 72630903 Upstream 19bp 10522 chr8 22873157 22873157 1 + T C UCEC 22873158 + 22873138 22873178 41 CTTCTGTCCCCAGTTCCACTGTGCGTACCAGCTGGCCGACT CTTCTGTCCCCAGTTCCACCGTGCGTACCAGCTGGCCGACT < 41bp 0.705235261419617 0.499037019274099 NA NA prediction 0.410470522839235 Functional Loss - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22873158 chr8:22873157 nonsynonymous SNV 0.978 2 20 hm7G_associated_SNPs_11133 0 0 0 0 2 RHOBTB2 chr8:22873151 3'AG 22873151 Downstream 7bp 10523 chr8 22873157 22873157 1 + T C UCEC 22873158 + 22873138 22873178 41 CTTCTGTCCCCAGTTCCACTGTGCGTACCAGCTGGCCGACT CTTCTGTCCCCAGTTCCACCGTGCGTACCAGCTGGCCGACT < 41bp 0.705235261419617 0.499037019274099 NA NA prediction 0.410470522839235 Functional Loss - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22873158 chr8:22873157 nonsynonymous SNV 0.978 2 20 hm7G_associated_SNPs_11133 0 0 0 0 2 RHOBTB2 chr8:22873256 5'GT 22873256 Upstream 100bp 10524 chr2 239234574 239234574 1 + A G STAD 239234575 + 239234555 239234595 41 GAGCCTGAAAGAACAAACGAGCTGCTCCAGATAATTGGAAA GAGCCTGAAAGAACAAACGGGCTGCTCCAGATAATTGGAAA < 41bp 0.71433759878034 0.509106377133887 NA NA prediction 0.410462443292906 Functional Loss - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239234575 chr2:239234574 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_11135 0 0 1 0 1 TRAF3IP1 chr2:239234611 5'GT 239234611 Upstream 38bp 10525 chr5 147469092 147469092 1 + T C UCEC 147469093 + 147469073 147469113 41 TTCGGCCCTTTGTTAGAGATGGAAGACTTGGATGCACAAGG TTCGGCCCTTTGTTAGAGACGGAAGACTTGGATGCACAAGG < 41bp 0.746645661959332 0.541415935173538 NA NA prediction 0.410459453571587 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147469093 chr5:147469092 synonymous SNV . 0 20 hm7G_associated_SNPs_11137 0 0 0 1 2 SPINK5 chr5:147469057 3'AG 147469057 Downstream 36bp 10526 chr5 147469092 147469092 1 + T C UCEC 147469093 + 147469073 147469113 41 TTCGGCCCTTTGTTAGAGATGGAAGACTTGGATGCACAAGG TTCGGCCCTTTGTTAGAGACGGAAGACTTGGATGCACAAGG < 41bp 0.746645661959332 0.541415935173538 NA NA prediction 0.410459453571587 Functional Loss - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147469093 chr5:147469092 synonymous SNV . 0 20 hm7G_associated_SNPs_11137 0 0 0 1 2 SPINK5 chr5:147469184 5'GT 147469184 Upstream 93bp 10527 chr19 35835779 35835779 1 + T C UCEC 35835780 + 35835760 35835800 41 GGCTGTGGGACTCGGGTCCTGCCTCGCCATCCTCATCCTGG GGCTGTGGGACTCGGGTCCCGCCTCGCCATCCTCATCCTGG < 41bp 0.735252306807043 0.530028463761241 NA NA prediction 0.410447686091604 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35835780 chr19:35835779 nonsynonymous SNV 0.179 3 20 hm7G_associated_SNPs_11138 0 0 0 0 2 CD22 chr19:35835732 3'AG 35835732 Downstream 48bp 10528 chr19 35835779 35835779 1 + T C UCEC 35835780 + 35835760 35835800 41 GGCTGTGGGACTCGGGTCCTGCCTCGCCATCCTCATCCTGG GGCTGTGGGACTCGGGTCCCGCCTCGCCATCCTCATCCTGG < 41bp 0.735252306807043 0.530028463761241 NA NA prediction 0.410447686091604 Functional Loss - CD22 ENSG00000012124 CDS Human protein_coding chr19:35835780 chr19:35835779 nonsynonymous SNV 0.179 3 20 hm7G_associated_SNPs_11138 0 0 0 0 2 CD22 chr19:35835828 5'GT 35835828 Upstream 50bp 10529 chr12 29469786 29469786 1 + T C BLCA 29469787 + 29469767 29469807 41 TCCCCAGGAGTCCAAGTCTTGGCAACCTTTGAAAAAATCCC TCCCCAGGAGTCCAAGTCTCGGCAACCTTTGAAAAAATCCC < 41bp 0.729440143120893 0.524216430367479 NA NA prediction 0.410447425506828 Functional Loss - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29469787 chr12:29469786 nonsynonymous SNV 0.718 0 20 hm7G_associated_SNPs_11139 0 0 0 0 1 FAR2 chr12:29469774 3'AG 29469774 Downstream 13bp 10530 chr12 46240687 46240687 1 + T C STAD 46240688 + 46240668 46240708 41 GCTCCACCTCCAGGAATAGTGGAAATAGATAGTGAGAAGTT GCTCCACCTCCAGGAATAGCGGAAATAGATAGTGAGAAGTT < 41bp 0.724152645887762 0.518933603288244 NA NA prediction 0.410438085199035 Functional Loss - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46240688 chr12:46240687 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11140 0 0 1 0 2 ARID2 chr12:46240639 3'AG 46240639 Downstream 49bp 10531 chr12 46240687 46240687 1 + T C STAD 46240688 + 46240668 46240708 41 GCTCCACCTCCAGGAATAGTGGAAATAGATAGTGAGAAGTT GCTCCACCTCCAGGAATAGCGGAAATAGATAGTGAGAAGTT < 41bp 0.724152645887762 0.518933603288244 NA NA prediction 0.410438085199035 Functional Loss - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46240688 chr12:46240687 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11140 0 0 1 0 2 ARID2 chr12:46240720 5'GT 46240720 Upstream 34bp 10532 chr3 99509537 99509537 1 + T G COAD 99509538 + 99509518 99509558 41 CCACAGGTGATGGCTGTGCTGCCTGGCCCTCTGCAGCTGCT CCACAGGTGATGGCTGTGCGGCCTGGCCCTCTGCAGCTGCT < 41bp 0.705198918664131 0.361685864011526 NA NA prediction 0.410397837328262 Functional Loss - COL8A1 ENSG00000144810 CDS Human protein_coding chr3:99509538 chr3:99509537 nonsynonymous SNV 0.550 1 20 hm7G_associated_SNPs_11143 0 0 0 0 1 MIR548G chr3:99509524 3'AG 99509524 Downstream 14bp 10533 chr12 111729283 111729283 1 + T C PCPG 111729284 + 111729264 111729304 41 GACTGCAGCCCCCCAGCTTTGACCCCAGTGGGCAGCCCCGG GACTGCAGCCCCCCAGCTTCGACCCCAGTGGGCAGCCCCGG < 41bp 0.705194977954567 0.496642177958824 NA NA prediction 0.410389955909133 Functional Loss - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111729284 chr12:111729283 synonymous SNV . 0 20 hm7G_associated_SNPs_11144 0 0 0 0 2 CUX2 chr12:111729222 3'AG 111729222 Downstream 62bp 10534 chr12 111729283 111729283 1 + T C PCPG 111729284 + 111729264 111729304 41 GACTGCAGCCCCCCAGCTTTGACCCCAGTGGGCAGCCCCGG GACTGCAGCCCCCCAGCTTCGACCCCAGTGGGCAGCCCCGG < 41bp 0.705194977954567 0.496642177958824 NA NA prediction 0.410389955909133 Functional Loss - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111729284 chr12:111729283 synonymous SNV . 0 20 hm7G_associated_SNPs_11144 0 0 0 0 2 CUX2 chr12:111729356 5'GT 111729356 Upstream 74bp 10535 chr11 111845669 111845669 1 + A G COAD 111845670 + 111845650 111845690 41 CCCTAGTGCAGCAGTACGAAGGGCAACAAAGGTCCCCGTCT CCCTAGTGCAGCAGTACGAGGGGCAACAAAGGTCCCCGTCT < 41bp 0.736181999540892 0.530993423503016 NA NA prediction 0.410377152075753 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111845670 chr11:111845669 synonymous SNV . 0 20 hm7G_associated_SNPs_11146 0 0 1 0 2 DIXDC1 chr11:111845600 3'AG 111845600 Downstream 70bp 10536 chr11 111845669 111845669 1 + A G COAD 111845670 + 111845650 111845690 41 CCCTAGTGCAGCAGTACGAAGGGCAACAAAGGTCCCCGTCT CCCTAGTGCAGCAGTACGAGGGGCAACAAAGGTCCCCGTCT < 41bp 0.736181999540892 0.530993423503016 NA NA prediction 0.410377152075753 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111845670 chr11:111845669 synonymous SNV . 0 20 hm7G_associated_SNPs_11146 0 0 1 0 2 DIXDC1 chr11:111845707 5'GT 111845707 Upstream 39bp 10537 chr17 6663903 6663903 1 + A G SKCM 6663904 + 6663884 6663924 41 GATGTCTGTCGCAGTGAACAGGCCCAGCTCGGGAAAGGTAA GATGTCTGTCGCAGTGAACGGGCCCAGCTCGGGAAAGGTAA < 41bp 0.714066483020078 0.508885817122446 NA NA prediction 0.410361331795263 Functional Loss - XAF1 ENSG00000132530 CDS Human protein_coding chr17:6663904 chr17:6663903 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_11147 0 0 0 0 1 XAF1 chr17:6663920 5'GT 6663920 Upstream 18bp 10538 chr1 93682252 93682252 1 + T C UCEC 93682253 + 93682233 93682273 41 AGCTGGAAGAAAAGATAGTTGCTTATTCCTCTATTGCTGCA AGCTGGAAGAAAAGATAGTCGCTTATTCCTCTATTGCTGCA < 41bp 0.711780685036614 0.506600270394297 NA NA prediction 0.410360829284635 Functional Loss - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93682253 chr1:93682252 synonymous SNV . 0 20 hm7G_associated_SNPs_11148 0 0 1 0 2 CCDC18 chr1:93682193 3'AG 93682193 Downstream 60bp 10539 chr1 93682252 93682252 1 + T C UCEC 93682253 + 93682233 93682273 41 AGCTGGAAGAAAAGATAGTTGCTTATTCCTCTATTGCTGCA AGCTGGAAGAAAAGATAGTCGCTTATTCCTCTATTGCTGCA < 41bp 0.711780685036614 0.506600270394297 NA NA prediction 0.410360829284635 Functional Loss - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93682253 chr1:93682252 synonymous SNV . 0 20 hm7G_associated_SNPs_11148 0 0 1 0 2 CCDC18 chr1:93682303 5'GT 93682303 Upstream 52bp 10540 chr7 149575841 149575841 1 + T C STAD 149575842 + 149575822 149575862 41 AATGAGACCATCTGGTACGTGCGCTTCCTGTGGGAGTGACC AATGAGACCATCTGGTACGCGCGCTTCCTGTGGGAGTGACC < 41bp 0.705178035460503 0.495931660158054 NA NA prediction 0.410356070921005 Functional Loss - ATP6V0E2 ENSG00000171130 CDS Human protein_coding chr7:149575842 chr7:149575841 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11149 0 0 1 0 2 ATP6V0E2 chr7:149575767 3'AG 149575767 Downstream 75bp 10541 chr7 149575841 149575841 1 + T C STAD 149575842 + 149575822 149575862 41 AATGAGACCATCTGGTACGTGCGCTTCCTGTGGGAGTGACC AATGAGACCATCTGGTACGCGCGCTTCCTGTGGGAGTGACC < 41bp 0.705178035460503 0.495931660158054 NA NA prediction 0.410356070921005 Functional Loss - ATP6V0E2 ENSG00000171130 CDS Human antisense chr7:149575842 chr7:149575841 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11149 0 0 1 0 2 ATP6V0E2 chr7:149575879 5'GT 149575879 Upstream 39bp 10542 chr11 10523056 10523056 1 + T C COAD 10523057 + 10523037 10523077 41 TCCTGTTCCGGCCGCACTGTGGGGAAGCCGGCTCCATCACC TCCTGTTCCGGCCGCACTGCGGGGAAGCCGGCTCCATCACC < 41bp 0.741660835140146 0.536483415415645 NA NA prediction 0.410354839449002 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10523057 chr11:10523056 synonymous SNV . 0 20 hm7G_associated_SNPs_11150 0 0 0 0 2 AMPD3 chr11:10523017 3'AG 10523017 Downstream 40bp 10543 chr11 10523056 10523056 1 + T C COAD 10523057 + 10523037 10523077 41 TCCTGTTCCGGCCGCACTGTGGGGAAGCCGGCTCCATCACC TCCTGTTCCGGCCGCACTGCGGGGAAGCCGGCTCCATCACC < 41bp 0.741660835140146 0.536483415415645 NA NA prediction 0.410354839449002 Functional Loss - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10523057 chr11:10523056 synonymous SNV . 0 20 hm7G_associated_SNPs_11150 0 0 0 0 2 AMPD3 chr11:10523137 5'GT 10523137 Upstream 82bp 10544 chr1 156552209 156552209 1 + A G LUSC 156552210 + 156552190 156552230 41 GCTCGGGAGTTTCACCAGAAGGCTGCTGACCTACACGGTGG GCTCGGGAGTTTCACCAGAGGGCTGCTGACCTACACGGTGG < 41bp 0.705170055557495 0.478028355678196 NA NA prediction 0.41034011111499 Functional Loss - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156552210 chr1:156552209 nonsynonymous SNV 0.647 1 20 hm7G_associated_SNPs_11152 0 0 0 0 1 TTC24 chr1:156552226 5'GT 156552226 Upstream 18bp 10545 chr1 34329957 34329957 1 + T G SKCM 34329958 + 34329938 34329978 41 GGAGATCCATCTCAAAGCATGAAAAGGCCAAATATGAAGCC GGAGATCCATCTCAAAGCAGGAAAAGGCCAAATATGAAGCC < 41bp 0.895075953000295 0.689912583455317 NA NA prediction 0.410326739089955 Functional Loss - HMGB4 ENSG00000176256 CDS Human protein_coding chr1:34329958 chr1:34329957 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_11154 0 0 0 0 1 HMGB4 chr1:34329864 3'AG 34329864 Downstream 94bp 10546 chr1 247582305 247582305 1 + T C rs147559626 247582306 + 247582286 247582326 41 GAGGAGAAGGCGTGGGCCATGGCCGTGTGGATCTTCGCTGC GAGGAGAAGGCGTGGGCCACGGCCGTGTGGATCTTCGCTGC < 41bp 0.707572961108549 0.502415349491 NA NA prediction 0.410315223235098 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247582306 chr1:247582305 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_11155 3 0 0 0 1 NLRP3 chr1:247582379 5'GT 247582379 Upstream 75bp 10547 chr9 136504977 136504977 1 + A G UCEC 136504978 + 136504958 136504998 41 GTCTCTGCAGGACGCCTGGAGTGACCAGAAGGGGCAGATCC GTCTCTGCAGGACGCCTGGGGTGACCAGAAGGGGCAGATCC < 41bp 0.758183617378783 0.553033733745522 NA NA prediction 0.410299767266522 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136504978 chr9:136504977 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_11156 0 0 0 0 1 DBH chr9:136504968 3'AG 136504968 Downstream 10bp 10548 chr4 187084719 187084719 1 + T C LIHC 187084720 + 187084700 187084740 41 CCTGGAGGCTGCCTTCTCTTGCTTCAGATTCACAGAGACTA CCTGGAGGCTGCCTTCTCTCGCTTCAGATTCACAGAGACTA < 41bp 0.709091050192188 0.50394477331903 NA NA prediction 0.410292553746316 Functional Loss - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187084720 chr4:187084719 synonymous SNV . 0 20 hm7G_associated_SNPs_11159 0 0 0 0 1 FAM149A chr4:187084787 5'GT 187084787 Upstream 69bp 10549 chr22 25270463 25270463 1 + T C UCEC 25270464 + 25270444 25270484 41 CCTGCAGGCCGGTCCATGCTGGTGGTGGCCAGAGGGAGTCA CCTGCAGGCCGGTCCATGCCGGTGGTGGCCAGAGGGAGTCA < 41bp 0.715827041321216 0.510681808108365 NA NA prediction 0.410290466425702 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25270464 chr22:25270463 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11160 0 0 0 0 2 SGSM1 chr22:25270382 3'AG 25270382 Downstream 82bp 10550 chr22 25270463 25270463 1 + T C UCEC 25270464 + 25270444 25270484 41 CCTGCAGGCCGGTCCATGCTGGTGGTGGCCAGAGGGAGTCA CCTGCAGGCCGGTCCATGCCGGTGGTGGCCAGAGGGAGTCA < 41bp 0.715827041321216 0.510681808108365 NA NA prediction 0.410290466425702 Functional Loss - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25270464 chr22:25270463 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11160 0 0 0 0 2 SGSM1 chr22:25270546 5'GT 25270546 Upstream 84bp 10551 chr19 18255950 18255950 1 + A G UCEC 18255951 + 18255931 18255971 41 GCCCCCCATCGTTATCCACAGCTCTGGCAAGAAGTACGGCT GCCCCCCATCGTTATCCACGGCTCTGGCAAGAAGTACGGCT < 41bp 0.769621935245389 0.564480015092457 NA NA prediction 0.410283840305864 Functional Loss - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18255951 chr19:18255950 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_11162 0 0 0 0 1 MAST3 chr19:18256039 5'GT 18256039 Upstream 90bp 10552 chr5 176003023 176003023 1 + T C LIHC 176003024 + 176003004 176003044 41 TGGGTGACAGTGAGAGTGATGGACGTCAATGACCACAAACC TGGGTGACAGTGAGAGTGACGGACGTCAATGACCACAAACC < 41bp 0.728477398368158 0.523336787350726 NA NA prediction 0.410281222034865 Functional Loss - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176003024 chr5:176003023 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_11163 0 0 0 0 1 CDHR2 chr5:176002953 3'AG 176002953 Downstream 71bp 10553 chr12 102043146 102043146 1 + T C OV 102043147 + 102043127 102043167 41 GAGCAACAAAGGCTGATGCTGCAGAATATTCAGTAATGACA GAGCAACAAAGGCTGATGCCGCAGAATATTCAGTAATGACA < 41bp 0.725274551034645 0.520134318261631 NA NA prediction 0.410280465546028 Functional Loss - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102043147 chr12:102043146 synonymous SNV . 0 20 hm7G_associated_SNPs_11164 0 0 0 0 1 MYBPC1 chr12:102043204 5'GT 102043204 Upstream 59bp 10554 chr20 43113158 43113158 1 + T C LIHC 43113159 + 43113139 43113179 41 TTATAGCCAAAAAGGTGATTGGCATCCTCCAGGTAAGACCC TTATAGCCAAAAAGGTGATCGGCATCCTCCAGGTAAGACCC < 41bp 0.721186022885143 0.516050336689546 NA NA prediction 0.410271372391193 Functional Loss - TTPAL ENSG00000124120 CDS Human protein_coding chr20:43113159 chr20:43113158 synonymous SNV . 0 20 hm7G_associated_SNPs_11166 0 0 1 0 1 TTPAL chr20:43113170 5'GT 43113170 Upstream 13bp 10555 chr7 148486903 148486903 1 + T C LIHC 148486904 + 148486884 148486924 41 TCCAGCAGTCTTGTACATTTGCCTTGCCGTCAGAGGTAAGG TCCAGCAGTCTTGTACATTCGCCTTGCCGTCAGAGGTAAGG < 41bp 0.730433088788566 0.525299711804536 NA NA prediction 0.41026675396806 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148486904 chr7:148486903 synonymous SNV . 0 20 hm7G_associated_SNPs_11167 0 0 1 0 2 CUL1 chr7:148486842 3'AG 148486842 Downstream 62bp 10556 chr7 148486903 148486903 1 + T C LIHC 148486904 + 148486884 148486924 41 TCCAGCAGTCTTGTACATTTGCCTTGCCGTCAGAGGTAAGG TCCAGCAGTCTTGTACATTCGCCTTGCCGTCAGAGGTAAGG < 41bp 0.730433088788566 0.525299711804536 NA NA prediction 0.41026675396806 Functional Loss - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148486904 chr7:148486903 synonymous SNV . 0 20 hm7G_associated_SNPs_11167 0 0 1 0 2 CUL1 chr7:148486918 5'GT 148486918 Upstream 16bp 10557 chr2 95715373 95715373 1 + A G COAD 95715374 + 95715354 95715394 41 TCTTTTACCTCAGCGCCTCAGTCCTGGAGGCCCTGGCCACC TCTTTTACCTCAGCGCCTCGGTCCTGGAGGCCCTGGCCACC < 41bp 0.744152552226512 0.539027771254618 NA NA prediction 0.410249561943788 Functional Loss - MAL ENSG00000172005 CDS Human protein_coding chr2:95715374 chr2:95715373 synonymous SNV . 0 20 hm7G_associated_SNPs_11168 0 0 0 0 2 MAL chr2:95715326 3'AG 95715326 Downstream 48bp 10558 chr2 95715373 95715373 1 + A G COAD 95715374 + 95715354 95715394 41 TCTTTTACCTCAGCGCCTCAGTCCTGGAGGCCCTGGCCACC TCTTTTACCTCAGCGCCTCGGTCCTGGAGGCCCTGGCCACC < 41bp 0.744152552226512 0.539027771254618 NA NA prediction 0.410249561943788 Functional Loss - MAL ENSG00000172005 CDS Human protein_coding chr2:95715374 chr2:95715373 synonymous SNV . 0 20 hm7G_associated_SNPs_11168 0 0 0 0 2 MAL chr2:95715451 5'GT 95715451 Upstream 79bp 10559 chr9 100423247 100423247 1 + T C rs35251482 100423248 + 100423228 100423268 41 ATTCTCTTCCTGGACATTCTGTTGCCCTCTGTTTAGCTGTT ATTCTCTTCCTGGACATTCCGTTGCCCTCTGTTTAGCTGTT < 41bp 0.718186527905443 0.51306479193176 NA NA prediction 0.410243471947366 Functional Loss - NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100423248 chr9:100423247 synonymous SNV . 0 20 hm7G_associated_SNPs_11169 0 0 1 0 1 NCBP1 chr9:100423228 3'AG 100423228 Downstream 20bp 10560 chr5 40958291 40958291 1 + T C SKCM 40958292 + 40958272 40958312 41 TACTGTTGAGGGGACCCATTGTCTGTGCCATTGCAAACCGT TACTGTTGAGGGGACCCATCGTCTGTGCCATTGCAAACCGT < 41bp 0.709581207400296 0.504464002876453 NA NA prediction 0.410234409047686 Functional Loss - C7 ENSG00000112936 CDS Human protein_coding chr5:40958292 chr5:40958291 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_11171 0 0 0 1 1 C7 chr5:40958363 5'GT 40958363 Upstream 73bp 10561 chr3 47040272 47040272 1 + T C COAD 47040273 + 47040253 47040293 41 CAGACCTCCCTCCTGGGCCTGGCGAGGGAGTTCCTGGTGCG CAGACCTCCCTCCTGGGCCCGGCGAGGGAGTTCCTGGTGCG < 41bp 0.7051027165022 0.495046514934996 NA NA prediction 0.4102054330044 Functional Loss - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47040273 chr3:47040272 nonsynonymous SNV 0.180 3 20 hm7G_associated_SNPs_11173 0 0 0 0 2 NBEAL2 chr3:47040207 3'AG 47040207 Downstream 66bp 10562 chr3 47040272 47040272 1 + T C COAD 47040273 + 47040253 47040293 41 CAGACCTCCCTCCTGGGCCTGGCGAGGGAGTTCCTGGTGCG CAGACCTCCCTCCTGGGCCCGGCGAGGGAGTTCCTGGTGCG < 41bp 0.7051027165022 0.495046514934996 NA NA prediction 0.4102054330044 Functional Loss - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47040273 chr3:47040272 nonsynonymous SNV 0.180 3 20 hm7G_associated_SNPs_11173 0 0 0 0 2 NBEAL2 chr3:47040369 5'GT 47040369 Upstream 98bp 10563 chr17 38450694 38450694 1 + T C UCEC 38450695 + 38450675 38450715 41 AAATGTAAGCCACAGCTGTTGAACTTCCCACCTTATACCAG AAATGTAAGCCACAGCTGTCGAACTTCCCACCTTATACCAG < 41bp 0.705098407161331 0.493536543975069 NA NA prediction 0.410196814322662 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450695 chr17:38450694 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_11174 0 0 1 0 2 CDC6 chr17:38450616 3'AG 38450616 Downstream 79bp 10564 chr17 38450694 38450694 1 + T C UCEC 38450695 + 38450675 38450715 41 AAATGTAAGCCACAGCTGTTGAACTTCCCACCTTATACCAG AAATGTAAGCCACAGCTGTCGAACTTCCCACCTTATACCAG < 41bp 0.705098407161331 0.493536543975069 NA NA prediction 0.410196814322662 Functional Loss - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38450695 chr17:38450694 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_11174 0 0 1 0 2 CDC6 chr17:38450755 5'GT 38450755 Upstream 62bp 10565 chr8 126033096 126033096 1 + T C rs6989548 126033097 + 126033077 126033117 41 GCGAATGTGTTGCGGGTCCTGTTGGGCTGCTTTCTGTGTAA GCGAATGTGTTGCGGGTCCCGTTGGGCTGCTTTCTGTGTAA < 41bp 0.705090651565786 0.499098115681674 NA NA prediction 0.410181303131572 Functional Loss - SQLE ENSG00000104549 CDS Human protein_coding chr8:126033097 chr8:126033096 synonymous SNV . 0 20 hm7G_associated_SNPs_11177 0 0 1 0 2 SQLE chr8:126033026 3'AG 126033026 Downstream 71bp 10566 chr8 126033096 126033096 1 + T C rs6989548 126033097 + 126033077 126033117 41 GCGAATGTGTTGCGGGTCCTGTTGGGCTGCTTTCTGTGTAA GCGAATGTGTTGCGGGTCCCGTTGGGCTGCTTTCTGTGTAA < 41bp 0.705090651565786 0.499098115681674 NA NA prediction 0.410181303131572 Functional Loss - SQLE ENSG00000104549 CDS Human protein_coding chr8:126033097 chr8:126033096 synonymous SNV . 0 20 hm7G_associated_SNPs_11177 0 0 1 0 2 SQLE chr8:126033113 5'GT 126033113 Upstream 18bp 10567 chr14 61449329 61449329 1 + T C rs370821477 61449330 + 61449310 61449350 41 CTTGGCTTAGCTTATGTTTTGGCTAATACCGGTGTCTTTGG CTTGGCTTAGCTTATGTTTCGGCTAATACCGGTGTCTTTGG < 41bp 0.708560257627787 0.50347566257286 NA NA prediction 0.410169190109855 Functional Loss - SLC38A6 ENSG00000139974 CDS Human protein_coding chr14:61449330 chr14:61449329 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_11180 0 0 0 0 1 SLC38A6 chr14:61449356 5'GT 61449356 Upstream 28bp 10568 chr9 138671267 138671267 1 + A G UCEC 138671268 + 138671248 138671288 41 TCCAACATGCGCTTCATGCAGTTCCGCGCCAAGGACAGCTA TCCAACATGCGCTTCATGCGGTTCCGCGCCAAGGACAGCTA < 41bp 0.72021400307187 0.515130656682103 NA NA prediction 0.410166692779534 Functional Loss - KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138671268 chr9:138671267 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11181 0 0 0 0 2 KCNT1 chr9:138671205 3'AG 138671205 Downstream 63bp 10569 chr9 138671267 138671267 1 + A G UCEC 138671268 + 138671248 138671288 41 TCCAACATGCGCTTCATGCAGTTCCGCGCCAAGGACAGCTA TCCAACATGCGCTTCATGCGGTTCCGCGCCAAGGACAGCTA < 41bp 0.72021400307187 0.515130656682103 NA NA prediction 0.410166692779534 Functional Loss - KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138671268 chr9:138671267 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11181 0 0 0 0 2 KCNT1 chr9:138671316 5'GT 138671316 Upstream 50bp 10570 chr4 1373906 1373906 1 + A G STAD 1373907 + 1373887 1373927 41 GTCAATGCCGACATCTCCGAGATGCTCCGGAGCCGCCACAT GTCAATGCCGACATCTCCGGGATGCTCCGGAGCCGCCACAT < 41bp 0.754762650314678 0.549698935947153 NA NA prediction 0.41012742873505 Functional Loss - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1373907 chr4:1373906 nonsynonymous SNV 0.476 1 20 hm7G_associated_SNPs_11182 0 0 0 0 1 UVSSA chr4:1373835 3'AG 1373835 Downstream 72bp 10571 chr3 112997048 112997048 1 + T C LUSC 112997049 + 112997029 112997069 41 AGCTTGTATGAAGTGGAGATGGCAGCTTACAACTGTGCGGG AGCTTGTATGAAGTGGAGACGGCAGCTTACAACTGTGCGGG < 41bp 0.705058840302479 0.490054582675277 NA NA prediction 0.410117680604959 Functional Loss - BOC ENSG00000144857 CDS Human protein_coding chr3:112997049 chr3:112997048 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11184 0 0 0 0 1 BOC chr3:112997104 5'GT 112997104 Upstream 57bp 10572 chr7 128455912 128455912 1 + A G rs143918184 128455913 + 128455893 128455933 41 GAAGAAGACAGTGAAGAGGAGGAGGATGACGCCGACTCTTC GAAGAAGACAGTGAAGAGGGGGAGGATGACGCCGACTCTTC < 41bp 0.711331637714347 0.506281702563262 NA NA prediction 0.410099870302169 Functional Loss - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128455913 chr7:128455912 nonsynonymous SNV 0.033 1 20 hm7G_associated_SNPs_11186 0 0 1 0 1 CCDC136 chr7:128455985 5'GT 128455985 Upstream 74bp 10573 chr17 27064909 27064909 1 + T G UCEC 27064910 + 27064890 27064930 41 TATGCCTGGGGTGGTGGGCTGGGCACCCCCCTGCGGCTGCC TATGCCTGGGGTGGTGGGCGGGGCACCCCCCTGCGGCTGCC < 41bp 0.915176877115189 0.710128612758631 NA NA prediction 0.410096528713116 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064910 chr17:27064909 nonsynonymous SNV 0.016 2 20 hm7G_associated_SNPs_11187 0 0 1 0 1 NEK8 chr17:27064837 3'AG 27064837 Downstream 73bp 10574 chr17 61619663 61619663 1 + A G rs41280098 61619664 + 61619644 61619684 41 AGCCAGGCAAGTCCAGTGCAGACGTGCGGGCTCTGACCTAC AGCCAGGCAAGTCCAGTGCGGACGTGCGGGCTCTGACCTAC < 41bp 0.739248910032741 0.534202247787618 NA NA prediction 0.410093324490245 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61619664 chr17:61619663 synonymous SNV . 0 20 hm7G_associated_SNPs_11188 0 0 0 0 1 KCNH6 chr17:61619602 3'AG 61619602 Downstream 62bp 10575 chr8 35544123 35544123 1 + T G SKCM 35544124 + 35544104 35544144 41 AGTCCAGAGTGTGAACATTTGCGGATCCGGGAGTGCACAGC AGTCCAGAGTGTGAACATTGGCGGATCCGGGAGTGCACAGC < 41bp 0.705046444693435 0.36258530761926 NA NA prediction 0.410092889386871 Functional Loss - UNC5D ENSG00000156687 CDS Human protein_coding chr8:35544124 chr8:35544123 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_11189 0 0 0 0 1 UNC5D chr8:35544063 3'AG 35544063 Downstream 61bp 10576 chr11 10785962 10785962 1 + T G CHOL 10785963 + 10785943 10785983 41 GTGCCCTCCATTTTAGACTTGGAAACCTAGGGGAGGCTAAG GTGCCCTCCATTTTAGACTGGGAAACCTAGGGGAGGCTAAG < 41bp 0.908219408302638 0.703187650338118 NA NA prediction 0.410063515929041 Functional Loss - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10785963 chr11:10785962 synonymous SNV . 0 20 hm7G_associated_SNPs_11190 0 0 1 0 1 CTR9 chr11:10785983 5'GT 10785983 Upstream 22bp 10577 chr4 39439579 39439579 1 + T C COAD 39439580 + 39439560 39439600 41 TGCAGGGCCAGTTTCCCTGTGACTTCTCCTGGGGTGTCACT TGCAGGGCCAGTTTCCCTGCGACTTCTCCTGGGGTGTCACT < 41bp 0.705031351365037 0.492605338606971 NA NA prediction 0.410062702730075 Functional Loss - KLB ENSG00000134962 CDS Human protein_coding chr4:39439580 chr4:39439579 synonymous SNV . 0 20 hm7G_associated_SNPs_11191 0 0 1 0 1 KLB chr4:39439615 5'GT 39439615 Upstream 37bp 10578 chr9 128691942 128691942 1 + T C UCEC 128691943 + 128691923 128691963 41 TCCCATTACAGGCATGTAATGAATTTACTACACATGTGATG TCCCATTACAGGCATGTAACGAATTTACTACACATGTGATG < 41bp 0.7321613156741 0.527156658352995 NA NA prediction 0.410009314642211 Functional Loss - PBX3 ENSG00000167081 CDS Human protein_coding chr9:128691943 chr9:128691942 synonymous SNV . 0 20 hm7G_associated_SNPs_11195 0 0 1 0 1 PBX3 chr9:128691934 3'AG 128691934 Downstream 9bp 10579 chr9 130263388 130263388 1 + A G UCEC 130263389 + 130263369 130263409 41 CCTGCAGAGCTGGAGGTGCAGGCCTCAGAGTGTGTCGTGTG CCTGCAGAGCTGGAGGTGCGGGCCTCAGAGTGTGTCGTGTG < 41bp 0.747006488490597 0.542011063062642 NA NA prediction 0.409990850855909 Functional Loss - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130263389 chr9:130263388 nonsynonymous SNV 0.907 0 20 hm7G_associated_SNPs_11196 0 0 1 0 2 LRSAM1 chr9:130263289 3'AG 130263289 Downstream 100bp 10580 chr9 130263388 130263388 1 + A G UCEC 130263389 + 130263369 130263409 41 CCTGCAGAGCTGGAGGTGCAGGCCTCAGAGTGTGTCGTGTG CCTGCAGAGCTGGAGGTGCGGGCCTCAGAGTGTGTCGTGTG < 41bp 0.747006488490597 0.542011063062642 NA NA prediction 0.409990850855909 Functional Loss - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130263389 chr9:130263388 nonsynonymous SNV 0.907 0 20 hm7G_associated_SNPs_11196 0 0 1 0 2 LRSAM1 chr9:130263422 5'GT 130263422 Upstream 35bp 10581 chr19 50926264 50926264 1 + T C rs1673030 50926265 + 50926245 50926285 41 CCCCGGGGCCTGGCCTCCCTGCATACCCCACGGAGAACTTC CCCCGGGGCCTGGCCTCCCCGCATACCCCACGGAGAACTTC < 41bp 0.731552544004021 0.526563391420334 NA NA prediction 0.409978305167374 Functional Loss - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926265 chr19:50926264 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_11199 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 31bp 10582 chr3 113311891 113311891 1 + T C LUSC 113311892 + 113311872 113311912 41 ATGGAAGCTTTGGGTCCAATGATGGTAAGAGCAATGCTTGG ATGGAAGCTTTGGGTCCAACGATGGTAAGAGCAATGCTTGG < 41bp 0.704984862429382 0.498040756035723 NA NA prediction 0.409969724858763 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113311892 chr3:113311891 synonymous SNV . 0 20 hm7G_associated_SNPs_11200 0 0 0 0 2 SIDT1 chr3:113311852 3'AG 113311852 Downstream 40bp 10583 chr3 113311891 113311891 1 + T C LUSC 113311892 + 113311872 113311912 41 ATGGAAGCTTTGGGTCCAATGATGGTAAGAGCAATGCTTGG ATGGAAGCTTTGGGTCCAACGATGGTAAGAGCAATGCTTGG < 41bp 0.704984862429382 0.498040756035723 NA NA prediction 0.409969724858763 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113311892 chr3:113311891 synonymous SNV . 0 20 hm7G_associated_SNPs_11200 0 0 0 0 2 SIDT1 chr3:113311895 5'GT 113311895 Upstream 5bp 10584 chr19 48325212 48325212 1 + T G rs544244692 48325213 + 48325193 48325233 41 TCCTTCAGCCTCTGCTGTCTGGCCGCTCTGTCTAGGTCCTG TCCTTCAGCCTCTGCTGTCGGGCCGCTCTGTCTAGGTCCTG < 41bp 0.704975539099159 0.424888414934104 NA NA prediction 0.409951078198317 Functional Loss - CRX ENSG00000105392 UTR5 Human protein_coding chr19:48325213 chr19:48325212 . . 0 20 hm7G_associated_SNPs_11201 0 0 0 0 1 CRX chr19:48325267 5'GT 48325267 Upstream 56bp 10585 chr5 115335517 115335517 1 + T C UCEC 115335518 + 115335498 115335538 41 AGAGAAGATCACGCCCTGGTGACTAGAGCTGTGGCCATGAA AGAGAAGATCACGCCCTGGCGACTAGAGCTGTGGCCATGAA < 41bp 0.731581643900468 0.526609171170085 NA NA prediction 0.409944945460766 Functional Loss - LVRN ENSG00000172901 CDS Human protein_coding chr5:115335518 chr5:115335517 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_11202 0 0 0 0 2 LVRN chr5:115335459 3'AG 115335459 Downstream 59bp 10586 chr5 115335517 115335517 1 + T C UCEC 115335518 + 115335498 115335538 41 AGAGAAGATCACGCCCTGGTGACTAGAGCTGTGGCCATGAA AGAGAAGATCACGCCCTGGCGACTAGAGCTGTGGCCATGAA < 41bp 0.731581643900468 0.526609171170085 NA NA prediction 0.409944945460766 Functional Loss - LVRN ENSG00000172901 CDS Human protein_coding chr5:115335518 chr5:115335517 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_11202 0 0 0 0 2 LVRN chr5:115335599 5'GT 115335599 Upstream 83bp 10587 chr7 73771780 73771780 1 + T C rs111322217 73771781 + 73771761 73771801 41 GCGAGGTGGAGAAGGAGATTGCCCTGCTCAAGGCACAGCAT GCGAGGTGGAGAAGGAGATCGCCCTGCTCAAGGCACAGCAT < 41bp 0.72091851011248 0.515946596989074 NA NA prediction 0.409943826246812 Functional Loss - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73771781 chr7:73771780 synonymous SNV . 0 20 hm7G_associated_SNPs_11203 0 0 0 0 1 CLIP2 chr7:73771807 5'GT 73771807 Upstream 28bp 10588 chr9 137017126 137017126 1 + A G rs34523253 137017127 + 137017107 137017147 41 GCATCTGGGACACCGCCTCAGGCCAGTGCCTGAAGACGCTC GCATCTGGGACACCGCCTCGGGCCAGTGCCTGAAGACGCTC < 41bp 0.78884353523201 0.583882249235205 NA NA prediction 0.409922571993609 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137017127 chr9:137017126 synonymous SNV . 0 20 hm7G_associated_SNPs_11204 0 0 1 0 2 WDR5 chr9:137017105 3'AG 137017105 Downstream 22bp 10589 chr9 137017126 137017126 1 + A G rs34523253 137017127 + 137017107 137017147 41 GCATCTGGGACACCGCCTCAGGCCAGTGCCTGAAGACGCTC GCATCTGGGACACCGCCTCGGGCCAGTGCCTGAAGACGCTC < 41bp 0.78884353523201 0.583882249235205 NA NA prediction 0.409922571993609 Functional Loss - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137017127 chr9:137017126 synonymous SNV . 0 20 hm7G_associated_SNPs_11204 0 0 1 0 2 WDR5 chr9:137017151 5'GT 137017151 Upstream 26bp 10590 chr10 118363552 118363552 1 + T C rs114054985 118363553 + 118363533 118363573 41 CCTGTGCAGGCTGGAGATATGGGGTTTCCATCACACTGTCT CCTGTGCAGGCTGGAGATACGGGGTTTCCATCACACTGTCT < 41bp 0.720622782076562 0.515666656708633 NA NA prediction 0.409912250735857 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118363553 chr10:118363552 synonymous SNV . 0 20 hm7G_associated_SNPs_11206 0 0 0 0 2 PNLIPRP1 chr10:118363542 3'AG 118363542 Downstream 11bp 10591 chr10 118363552 118363552 1 + T C rs114054985 118363553 + 118363533 118363573 41 CCTGTGCAGGCTGGAGATATGGGGTTTCCATCACACTGTCT CCTGTGCAGGCTGGAGATACGGGGTTTCCATCACACTGTCT < 41bp 0.720622782076562 0.515666656708633 NA NA prediction 0.409912250735857 Functional Loss - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118363553 chr10:118363552 synonymous SNV . 0 20 hm7G_associated_SNPs_11206 0 0 0 0 2 PNLIPRP1 chr10:118363650 5'GT 118363650 Upstream 99bp 10592 chr8 36694447 36694447 1 + T C LUSC 36694448 + 36694428 36694468 41 TTCCTAACATCTCTATTTGTGGAGCAAAACAAAAAGGTAAC TTCCTAACATCTCTATTTGCGGAGCAAAACAAAAAGGTAAC < 41bp 0.718314535157309 0.513366628390936 NA NA prediction 0.409895813532746 Functional Loss - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36694448 chr8:36694447 nonsynonymous SNV 0.989 0 20 hm7G_associated_SNPs_11208 0 0 0 0 1 KCNU1 chr8:36694463 5'GT 36694463 Upstream 17bp 10593 chr22 39811550 39811550 1 + T C rs144332453 39811551 + 39811531 39811571 41 GGGTCTTCAACGGCTATGATGGCAACCGAGTGACCAACTTC GGGTCTTCAACGGCTATGACGGCAACCGAGTGACCAACTTC < 41bp 0.747796987952212 0.542858138362717 NA NA prediction 0.409877699178989 Functional Loss - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39811551 chr22:39811550 synonymous SNV . 0 20 hm7G_associated_SNPs_11210 0 0 1 0 1 TAB1 chr22:39811505 3'AG 39811505 Downstream 46bp 10594 chr3 10280460 10280460 1 + A G rs12486661 10280461 + 10280441 10280481 41 TCTGTGGCTGCTGTGGAAGAGCGGCTCCGAGGTCGGGAGAC TCTGTGGCTGCTGTGGAAGGGCGGCTCCGAGGTCGGGAGAC < 41bp 0.72488694222655 0.519948722263602 NA NA prediction 0.409876439925895 Functional Loss - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10280461 chr3:10280460 nonsynonymous SNV 0.402 0 20 hm7G_associated_SNPs_11211 0 0 0 0 1 IRAK2 chr3:10280432 3'AG 10280432 Downstream 29bp 10595 chr7 128849174 128849174 1 + A G STAD 128849175 + 128849155 128849195 41 CTTTGTGCTCATTACCTTCAGCTGCCACTTCTACGACTTCT CTTTGTGCTCATTACCTTCGGCTGCCACTTCTACGACTTCT < 41bp 0.750421457552714 0.545485334380212 NA NA prediction 0.409872246345004 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128849175 chr7:128849174 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11212 0 0 0 0 2 SMO chr7:128849130 3'AG 128849130 Downstream 45bp 10596 chr7 128849174 128849174 1 + A G STAD 128849175 + 128849155 128849195 41 CTTTGTGCTCATTACCTTCAGCTGCCACTTCTACGACTTCT CTTTGTGCTCATTACCTTCGGCTGCCACTTCTACGACTTCT < 41bp 0.750421457552714 0.545485334380212 NA NA prediction 0.409872246345004 Functional Loss - SMO ENSG00000128602 CDS Human protein_coding chr7:128849175 chr7:128849174 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11212 0 0 0 0 2 SMO chr7:128849238 5'GT 128849238 Upstream 65bp 10597 chr2 109068871 109068871 1 + T C COAD 109068872 + 109068852 109068892 41 TAGAATTGGAGAAAGAAATTGAAGAACTCAGATCAAAACCT TAGAATTGGAGAAAGAAATCGAAGAACTCAGATCAAAACCT < 41bp 0.706419963357004 0.501502869514224 NA NA prediction 0.409834187685561 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109068872 chr2:109068871 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_11214 0 0 1 0 2 GCC2 chr2:109068855 3'AG 109068855 Downstream 17bp 10598 chr2 109068871 109068871 1 + T C COAD 109068872 + 109068852 109068892 41 TAGAATTGGAGAAAGAAATTGAAGAACTCAGATCAAAACCT TAGAATTGGAGAAAGAAATCGAAGAACTCAGATCAAAACCT < 41bp 0.706419963357004 0.501502869514224 NA NA prediction 0.409834187685561 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109068872 chr2:109068871 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_11214 0 0 1 0 2 GCC2 chr2:109068922 5'GT 109068922 Upstream 52bp 10599 chr17 38430204 38430204 1 + T C UCEC 38430205 + 38430185 38430225 41 CCTCCTCCTCCACCGCCCCTGAGGAATGGCCACAGAGATTC CCTCCTCCTCCACCGCCCCCGAGGAATGGCCACAGAGATTC < 41bp 0.704914242497279 0.490656098111658 NA NA prediction 0.409828484994559 Functional Loss - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38430205 chr17:38430204 nonsynonymous SNV 0.843 2 20 hm7G_associated_SNPs_11216 0 0 1 0 1 WIPF2 chr17:38430251 5'GT 38430251 Upstream 48bp 10600 chr20 29632715 29632715 1 + T C GBM 29632716 + 29632696 29632736 41 TTTTTGCATGAGACGCTTCTGGACAGGTAGCTATTTATTTA TTTTTGCATGAGACGCTTCCGGACAGGTAGCTATTTATTTA < 41bp 0.708266380356489 0.503365711406941 NA NA prediction 0.409801337899095 Functional Loss - FRG1BP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29632716 chr20:29632715 nonsynonymous SNV 0.796 3 20 hm7G_associated_SNPs_11218 0 0 0 2 1 FRG1BP chr20:29632721 5'GT 29632721 Upstream 7bp 10601 chr15 89731510 89731510 1 + T C LIHC 89731511 + 89731491 89731531 41 TACACAGCAACATCCCTGATGCAGATTGATGACAATGTGAT TACACAGCAACATCCCTGACGCAGATTGATGACAATGTGAT < 41bp 0.750658296829988 0.545761664049428 NA NA prediction 0.409793265561121 Functional Loss - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89731511 chr15:89731510 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_11219 0 0 1 0 2 ABHD2 chr15:89731424 3'AG 89731424 Downstream 87bp 10602 chr15 89731510 89731510 1 + T C LIHC 89731511 + 89731491 89731531 41 TACACAGCAACATCCCTGATGCAGATTGATGACAATGTGAT TACACAGCAACATCCCTGACGCAGATTGATGACAATGTGAT < 41bp 0.750658296829988 0.545761664049428 NA NA prediction 0.409793265561121 Functional Loss - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89731511 chr15:89731510 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_11219 0 0 1 0 2 ABHD2 chr15:89731534 5'GT 89731534 Upstream 25bp 10603 chr11 123489412 123489412 1 + T C LUSC 123489413 + 123489393 123489433 41 CTTCCTAGTCTGGTGCTGCTGGTCATCCTTAACATGATGCT CTTCCTAGTCTGGTGCTGCCGGTCATCCTTAACATGATGCT < 41bp 0.755772230039834 0.550878480619291 NA NA prediction 0.409787498841086 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123489413 chr11:123489412 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11220 0 0 0 0 2 GRAMD1B chr11:123489401 3'AG 123489401 Downstream 12bp 10604 chr11 123489412 123489412 1 + T C LUSC 123489413 + 123489393 123489433 41 CTTCCTAGTCTGGTGCTGCTGGTCATCCTTAACATGATGCT CTTCCTAGTCTGGTGCTGCCGGTCATCCTTAACATGATGCT < 41bp 0.755772230039834 0.550878480619291 NA NA prediction 0.409787498841086 Functional Loss - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123489413 chr11:123489412 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11220 0 0 0 0 2 GRAMD1B chr11:123489508 5'GT 123489508 Upstream 97bp 10605 chr15 42631958 42631958 1 + T C rs200432705 42631959 + 42631939 42631979 41 AGCCCTTCTTCCGTGGCCATGCCACCATGAACACCAAGCGA AGCCCTTCTTCCGTGGCCACGCCACCATGAACACCAAGCGA < 41bp 0.740590401037648 0.53569726624714 NA NA prediction 0.409786269581017 Functional Loss - GANC ENSG00000214013 CDS Human protein_coding chr15:42631959 chr15:42631958 synonymous SNV . 0 20 hm7G_associated_SNPs_11221 0 0 0 0 1 GANC chr15:42631867 3'AG 42631867 Downstream 92bp 10606 chr3 38263123 38263123 1 + T C UCEC 38263124 + 38263104 38263144 41 GATATTACCCGAAATAAAGTGAGAAAGACCTTTGTTGGCAC GATATTACCCGAAATAAAGCGAGAAAGACCTTTGTTGGCAC < 41bp 0.704876859162636 0.493053285159625 NA NA prediction 0.409753718325273 Functional Loss - OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38263124 chr3:38263123 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11224 0 0 1 0 2 OXSR1 chr3:38263069 3'AG 38263069 Downstream 55bp 10607 chr3 38263123 38263123 1 + T C UCEC 38263124 + 38263104 38263144 41 GATATTACCCGAAATAAAGTGAGAAAGACCTTTGTTGGCAC GATATTACCCGAAATAAAGCGAGAAAGACCTTTGTTGGCAC < 41bp 0.704876859162636 0.493053285159625 NA NA prediction 0.409753718325273 Functional Loss - OXSR1 ENSG00000172939 CDS Human protein_coding chr3:38263124 chr3:38263123 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11224 0 0 1 0 2 OXSR1 chr3:38263178 5'GT 38263178 Upstream 56bp 10608 chr5 134332156 134332156 1 + A G rs201208840 134332157 + 134332137 134332177 41 TATATCGCTGATGGCATGCAGTCCCTGCGCATCCTCAAGCT TATATCGCTGATGGCATGCGGTCCCTGCGCATCCTCAAGCT < 41bp 0.722759876811933 0.517884369994694 NA NA prediction 0.409751013634478 Functional Loss - CATSPER3 ENSG00000152705 CDS Human protein_coding chr5:134332157 chr5:134332156 nonsynonymous SNV 0.726 4 20 hm7G_associated_SNPs_11225 0 0 0 0 1 CATSPER3 chr5:134332202 5'GT 134332202 Upstream 47bp 10609 chr16 67208846 67208846 1 + A G DLBC 67208847 + 67208827 67208867 41 AGGAAAGGGACGAGTCCGAAGGTGTGAGTCCGCCCAAACCC AGGAAAGGGACGAGTCCGAGGGTGTGAGTCCGCCCAAACCC < 41bp 0.704861826148071 0.488429453720001 NA NA prediction 0.409723652296143 Functional Loss - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208847 chr16:67208846 nonsynonymous SNV 0.949 1 20 hm7G_associated_SNPs_11227 0 0 0 0 1 NOL3 chr16:67208847 5'GT 67208847 Upstream 2bp 10610 chr7 44080654 44080654 1 + A G rs573241172 44080655 + 44080635 44080675 41 CTTGTTGATGATGGGGCCCAGGACGCCGTGCAGGTACTGCA CTTGTTGATGATGGGGCCCGGGACGCCGTGCAGGTACTGCA < 41bp 0.751535970238716 0.546676184980264 NA NA prediction 0.409719570516903 Functional Loss - LINC00957 ENSG00000228903;ENSG00000235314 ncRNA_exonic Human lincRNA chr7:44080655 chr7:44080654 . . 0 20 hm7G_associated_SNPs_11228 0 0 0 0 1 LINC00957 chr7:44080701 5'GT 44080701 Upstream 48bp 10611 chr1 153661563 153661563 1 + A G STAD 153661564 + 153661544 153661584 41 GCTGAGGCCCTGCTCTACCAGATCCTGCCTCAGTGAGTGCC GCTGAGGCCCTGCTCTACCGGATCCTGCCTCAGTGAGTGCC < 41bp 0.712430832997147 0.507571817269421 NA NA prediction 0.409718031455452 Functional Loss - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153661564 chr1:153661563 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11229 0 0 0 0 1 NPR1 chr1:153661575 5'GT 153661575 Upstream 13bp 10612 chr19 50545070 50545070 1 + A G rs10419911 50545071 + 50545051 50545091 41 AGGAAGCCCAGAAGCAACAAGCCCTGGTGAGTGGATGGAGA AGGAAGCCCAGAAGCAACAGGCCCTGGTGAGTGGATGGAGA < 41bp 0.704857233635094 0.48295301904071 NA NA prediction 0.409714467270189 Functional Loss - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50545071 chr19:50545070 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_11230 0 0 1 0 2 ZNF473 chr19:50544987 3'AG 50544987 Downstream 84bp 10613 chr19 50545070 50545070 1 + A G rs10419911 50545071 + 50545051 50545091 41 AGGAAGCCCAGAAGCAACAAGCCCTGGTGAGTGGATGGAGA AGGAAGCCCAGAAGCAACAGGCCCTGGTGAGTGGATGGAGA < 41bp 0.704857233635094 0.48295301904071 NA NA prediction 0.409714467270189 Functional Loss - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50545071 chr19:50545070 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_11230 0 0 1 0 2 ZNF473 chr19:50545076 5'GT 50545076 Upstream 7bp 10614 chr11 66326796 66326796 1 + A G LIHC 66326797 + 66326777 66326817 41 GCGCCACGAGGCCTTTGAGAGCGACCTGGCGGCGCACCAGG GCGCCACGAGGCCTTTGAGGGCGACCTGGCGGCGCACCAGG < 41bp 0.795179399931583 0.590336773326795 NA NA prediction 0.409685253209576 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66326797 chr11:66326796 unknown 0.999 0 20 hm7G_associated_SNPs_11233 0 0 0 0 2 ACTN3 chr11:66326707 3'AG 66326707 Downstream 90bp 10615 chr11 66326796 66326796 1 + A G LIHC 66326797 + 66326777 66326817 41 GCGCCACGAGGCCTTTGAGAGCGACCTGGCGGCGCACCAGG GCGCCACGAGGCCTTTGAGGGCGACCTGGCGGCGCACCAGG < 41bp 0.795179399931583 0.590336773326795 NA NA prediction 0.409685253209576 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66326797 chr11:66326796 unknown 0.999 0 20 hm7G_associated_SNPs_11233 0 0 0 0 2 ACTN3 chr11:66326857 5'GT 66326857 Upstream 62bp 10616 chr3 33416852 33416852 1 + T C UCEC 33416853 + 33416833 33416873 41 GGCTCTCTGCCTTTCGGGTTGCAGCAACCTCACAGATGCCT GGCTCTCTGCCTTTCGGGTCGCAGCAACCTCACAGATGCCT < 41bp 0.748907157251212 0.544081290612957 NA NA prediction 0.40965173327651 Functional Loss - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33416853 chr3:33416852 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_11235 0 0 0 0 1 FBXL2 chr3:33416910 5'GT 33416910 Upstream 59bp 10617 chr2 128408376 128408376 1 + T G UCEC 128408377 + 128408357 128408397 41 CCTGGCCACGGCAGAGCAATGTGGCCAGGAGACGCCACTGG CCTGGCCACGGCAGAGCAAGGTGGCCAGGAGACGCCACTGG < 41bp 0.903363166761385 0.698542630324522 NA NA prediction 0.409641072873727 Functional Loss - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128408377 chr2:128408376 nonsynonymous SNV 0.954 2 20 hm7G_associated_SNPs_11237 0 0 0 0 1 GPR17 chr2:128408290 3'AG 128408290 Downstream 87bp 10618 chr3 49050551 49050551 1 + T C LAML 49050552 + 49050532 49050572 41 CAGGTCTGCTCAAGGACCCTGGGGTGGGAGGCAAGGCTCGG CAGGTCTGCTCAAGGACCCCGGGGTGGGAGGCAAGGCTCGG < 41bp 0.708755529527626 0.503942415343294 NA NA prediction 0.409626228368662 Functional Loss - WDR6 ENSG00000178252 CDS Human protein_coding chr3:49050552 chr3:49050551 synonymous SNV . 0 20 hm7G_associated_SNPs_11239 0 0 1 0 1 WDR6 chr3:49050475 3'AG 49050475 Downstream 77bp 10619 chr20 57899407 57899407 1 + A G STAD 57899408 + 57899388 57899428 41 TGAAGTCAAGGACCAACAAAGCAAGCAGGCTTTAGACCTCC TGAAGTCAAGGACCAACAAGGCAAGCAGGCTTTAGACCTCC < 41bp 0.705984201263508 0.501184006550233 NA NA prediction 0.40960038942655 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899408 chr20:57899407 nonsynonymous SNV 0.019 1 20 hm7G_associated_SNPs_11240 0 0 0 0 2 EDN3 chr20:57899382 3'AG 57899382 Downstream 26bp 10620 chr20 57899407 57899407 1 + A G STAD 57899408 + 57899388 57899428 41 TGAAGTCAAGGACCAACAAAGCAAGCAGGCTTTAGACCTCC TGAAGTCAAGGACCAACAAGGCAAGCAGGCTTTAGACCTCC < 41bp 0.705984201263508 0.501184006550233 NA NA prediction 0.40960038942655 Functional Loss - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899408 chr20:57899407 nonsynonymous SNV 0.019 1 20 hm7G_associated_SNPs_11240 0 0 0 0 2 EDN3 chr20:57899386 3'AG 57899386 Downstream 22bp 10621 chr1 26156176 26156176 1 + A G STAD 26156177 + 26156157 26156197 41 CCCCCTGCTTTGTTCTGCCAGCCCTGAATGTTGCAAACCAG CCCCCTGCTTTGTTCTGCCGGCCCTGAATGTTGCAAACCAG < 41bp 0.712161507722699 0.507378967483887 NA NA prediction 0.409565080477625 Functional Loss - MTFR1L ENSG00000117640;ENSG00000117640 exonic;splicing Human protein_coding chr1:26156177 chr1:26156176 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11241 0 0 1 0 1 MTFR1L chr1:26156109 3'AG 26156109 Downstream 68bp 10622 chr15 69714012 69714012 1 + T C UCEC 69714013 + 69713993 69714033 41 ATTCATTTAAACAAGTATTTGGCACTCACACCACCCAGAAG ATTCATTTAAACAAGTATTCGGCACTCACACCACCCAGAAG < 41bp 0.747836263030587 0.543055779508354 NA NA prediction 0.409560967044467 Functional Loss - KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714013 chr15:69714012 synonymous SNV . 0 20 hm7G_associated_SNPs_11242 0 0 1 1 2 KIF23 chr15:69713986 3'AG 69713986 Downstream 27bp 10623 chr15 69714012 69714012 1 + T C UCEC 69714013 + 69713993 69714033 41 ATTCATTTAAACAAGTATTTGGCACTCACACCACCCAGAAG ATTCATTTAAACAAGTATTCGGCACTCACACCACCCAGAAG < 41bp 0.747836263030587 0.543055779508354 NA NA prediction 0.409560967044467 Functional Loss - KIF23 ENSG00000137807 CDS Human protein_coding chr15:69714013 chr15:69714012 synonymous SNV . 0 20 hm7G_associated_SNPs_11242 0 0 1 1 2 KIF23 chr15:69714091 5'GT 69714091 Upstream 80bp 10624 chr12 29617570 29617570 1 - A G LUSC 29617569 - 29617549 29617589 41 TAAGTTATGACTCTGACATTGCCCTAATACAACTAAGCTCT TAAGTTATGACTCTGACATCGCCCTAATACAACTAAGCTCT < 41bp 0.70477566933409 0.495429908833539 NA NA prediction 0.40955133866818 Functional Loss - OVCH1 ENSG00000187950 CDS Human protein_coding chr12:29617569 chr12:29617570 synonymous SNV . 0 20 hm7G_associated_SNPs_11243 0 0 0 0 1 OVCH1 chr12:29617635 3'AG 29617635 Downstream 66bp 10625 chr9 100124715 100124715 1 + T C UCEC 100124716 + 100124696 100124736 41 CCAGTGCCAGTGCTACCTCTGCAGGCAGGTAGGACACAAAG CCAGTGCCAGTGCTACCTCCGCAGGCAGGTAGGACACAAAG < 41bp 0.727797139507479 0.523038351121392 NA NA prediction 0.409517576772175 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100124716 chr9:100124715 synonymous SNV . 0 20 hm7G_associated_SNPs_11244 0 0 0 0 2 CCDC180 chr9:100124645 3'AG 100124645 Downstream 71bp 10626 chr9 100124715 100124715 1 + T C UCEC 100124716 + 100124696 100124736 41 CCAGTGCCAGTGCTACCTCTGCAGGCAGGTAGGACACAAAG CCAGTGCCAGTGCTACCTCCGCAGGCAGGTAGGACACAAAG < 41bp 0.727797139507479 0.523038351121392 NA NA prediction 0.409517576772175 Functional Loss - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100124716 chr9:100124715 synonymous SNV . 0 20 hm7G_associated_SNPs_11244 0 0 0 0 2 CCDC180 chr9:100124723 5'GT 100124723 Upstream 9bp 10627 chr3 30691804 30691804 1 + T C COAD 30691805 + 30691785 30691825 41 CACTAGAGACAGTTTGCCATGACCCCAAGCTCCCCTACCAT CACTAGAGACAGTTTGCCACGACCCCAAGCTCCCCTACCAT < 41bp 0.742991924567637 0.538236655896437 NA NA prediction 0.4095105373424 Functional Loss - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30691805 chr3:30691804 synonymous SNV . 0 20 hm7G_associated_SNPs_11245 0 0 0 0 2 TGFBR2 chr3:30691762 3'AG 30691762 Downstream 43bp 10628 chr3 30691804 30691804 1 + T C COAD 30691805 + 30691785 30691825 41 CACTAGAGACAGTTTGCCATGACCCCAAGCTCCCCTACCAT CACTAGAGACAGTTTGCCACGACCCCAAGCTCCCCTACCAT < 41bp 0.742991924567637 0.538236655896437 NA NA prediction 0.4095105373424 Functional Loss - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30691805 chr3:30691804 synonymous SNV . 0 20 hm7G_associated_SNPs_11245 0 0 0 0 2 TGFBR2 chr3:30691765 3'AG 30691765 Downstream 40bp 10629 chr1 27627864 27627864 1 + A G LIHC 27627865 + 27627845 27627885 41 AGTGCCTGGACGACTTCAAAGGGAAATTTCCGGAGCAGGCC AGTGCCTGGACGACTTCAAGGGGAAATTTCCGGAGCAGGCC < 41bp 0.704734082536779 0.488014131734262 NA NA prediction 0.409468165073559 Functional Loss - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27627865 chr1:27627864 synonymous SNV . 0 20 hm7G_associated_SNPs_11247 0 0 1 2 1 WDTC1 chr1:27627952 5'GT 27627952 Upstream 89bp 10630 chr7 75045841 75045841 1 + A G KIRP 75045842 + 75045822 75045862 41 GAGAAAGAAGAGACAGCAAAGAGCCGCAGCCGGTGCTTGCA GAGAAAGAAGAGACAGCAAGGAGCCGCAGCCGGTGCTTGCA < 41bp 0.732086282379106 0.527359245033947 NA NA prediction 0.409454074690318 Functional Loss - NSUN5P1 ENSG00000223705 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:75045842 chr7:75045841 . . 0 20 hm7G_associated_SNPs_11248 0 0 0 0 1 NSUN5P1 chr7:75045765 3'AG 75045765 Downstream 77bp 10631 chr13 50080880 50080880 1 + T C PAAD 50080881 + 50080861 50080901 41 CAGAGAATATAGCTGCTCATGAGAATTGTTTGGTAAGTTAC CAGAGAATATAGCTGCTCACGAGAATTGTTTGGTAAGTTAC < 41bp 0.710911658532808 0.506196153242875 NA NA prediction 0.409431010579865 Functional Loss - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50080881 chr13:50080880 synonymous SNV . 0 20 hm7G_associated_SNPs_11250 0 0 0 0 1 PHF11;SETDB2-PHF11 chr13:50080892 5'GT 50080892 Upstream 13bp 10632 chr1 44128741 44128741 1 + T C KIRC 44128742 + 44128722 44128762 41 GCATCAACTACCTGCACTTTGGAGAACCAAAGTCCTGGTAC GCATCAACTACCTGCACTTCGGAGAACCAAAGTCCTGGTAC < 41bp 0.735155863820499 0.530447183344246 NA NA prediction 0.409417360952506 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44128742 chr1:44128741 synonymous SNV . 0 20 hm7G_associated_SNPs_11251 0 0 1 0 1 KDM4A chr1:44128758 5'GT 44128758 Upstream 18bp 10633 chr22 19495321 19495321 1 + A G UCEC 19495322 + 19495302 19495342 41 CAGGTGAAGCAGAAGTTCCAGGCCATGGACATCTCCTTGAA CAGGTGAAGCAGAAGTTCCGGGCCATGGACATCTCCTTGAA < 41bp 0.733800716022691 0.529104917199382 NA NA prediction 0.409391597646618 Functional Loss - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19495322 chr22:19495321 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_11252 0 0 1 0 2 CDC45 chr22:19495289 3'AG 19495289 Downstream 33bp 10634 chr22 19495321 19495321 1 + A G UCEC 19495322 + 19495302 19495342 41 CAGGTGAAGCAGAAGTTCCAGGCCATGGACATCTCCTTGAA CAGGTGAAGCAGAAGTTCCGGGCCATGGACATCTCCTTGAA < 41bp 0.733800716022691 0.529104917199382 NA NA prediction 0.409391597646618 Functional Loss - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19495322 chr22:19495321 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_11252 0 0 1 0 2 CDC45 chr22:19495387 5'GT 19495387 Upstream 67bp 10635 chr20 30408025 30408025 1 + T C LIHC 30408026 + 30408006 30408046 41 GCTCCGGATCCACCCACCCTGAAGAAAGATGCCAAAGCCCC GCTCCGGATCCACCCACCCCGAAGAAAGATGCCAAAGCCCC < 41bp 0.717722250566008 0.51303457256649 NA NA prediction 0.409375355999037 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30408026 chr20:30408025 nonsynonymous SNV 0.549 0 20 hm7G_associated_SNPs_11253 0 0 0 0 1 MYLK2 chr20:30407929 3'AG 30407929 Downstream 97bp 10636 chr1 42875811 42875811 1 + T C BRCA 42875812 + 42875792 42875832 41 GGCCAGGTCATAGGCTCTATGCTTCGCTGCTCCACTGATGG GGCCAGGTCATAGGCTCTACGCTTCGCTGCTCCACTGATGG < 41bp 0.704682268917953 0.496157366579821 NA NA prediction 0.409364537835906 Functional Loss - RIMKLA ENSG00000177181 CDS Human protein_coding chr1:42875812 chr1:42875811 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_11255 0 0 0 0 1 RIMKLA chr1:42875858 5'GT 42875858 Upstream 48bp 10637 chr17 26821104 26821104 1 + A G STAD 26821105 + 26821085 26821125 41 TCATACCCTCCAAGTTCCCAGGGCTGACCCAGGACCCAGGT TCATACCCTCCAAGTTCCCGGGGCTGACCCAGGACCCAGGT < 41bp 0.76327089080547 0.558596930344747 NA NA prediction 0.409347920921444 Functional Loss - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26821105 chr17:26821104 synonymous SNV . 0 20 hm7G_associated_SNPs_11257 0 0 0 0 1 SLC13A2 chr17:26821035 3'AG 26821035 Downstream 70bp 10638 chr4 128595314 128595314 1 + T C UCEC 128595315 + 128595295 128595335 41 AATGGAAAACAAATTCATGTGGCTTATTGGAAAGAATCTGA AATGGAAAACAAATTCATGCGGCTTATTGGAAAGAATCTGA < 41bp 0.711802118238916 0.507131366821532 NA NA prediction 0.409341502834769 Functional Loss - INTU ENSG00000164066 CDS Human protein_coding chr4:128595315 chr4:128595314 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_11258 0 0 1 0 1 INTU chr4:128595279 3'AG 128595279 Downstream 36bp 10639 chr6 159636155 159636155 1 + T C CESC 159636156 + 159636136 159636176 41 ATGTTCCACTGACAAGAGATGAACGGACACACGAAATTAAA ATGTTCCACTGACAAGAGACGAACGGACACACGAAATTAAA < 41bp 0.73004417522766 0.525388919625525 NA NA prediction 0.40931051120427 Functional Loss - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159636156 chr6:159636155 synonymous SNV . 0 20 hm7G_associated_SNPs_11259 0 0 1 0 1 FNDC1 chr6:159636183 5'GT 159636183 Upstream 29bp 10640 chr8 37978632 37978632 1 + T C LIHC 37978633 + 37978613 37978653 41 GACCTCTACAGAGCCTGCTTGTATGAACGGGTTTTGTTAGC GACCTCTACAGAGCCTGCTCGTATGAACGGGTTTTGTTAGC < 41bp 0.70464312743126 0.49995016017719 NA NA prediction 0.40928625486252 Functional Loss - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37978633 chr8:37978632 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11260 0 0 1 0 1 ASH2L chr8:37978667 5'GT 37978667 Upstream 36bp 10641 chr11 69954464 69954464 1 + T C BLCA 69954465 + 69954445 69954485 41 TGTCTCTGCAATAGGTCTATGAGATCTTGAAGAGAACGACG TGTCTCTGCAATAGGTCTACGAGATCTTGAAGAGAACGACG < 41bp 0.734775228299515 0.530135189265531 NA NA prediction 0.409280078067969 Functional Loss - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69954465 chr11:69954464 synonymous SNV . 0 20 hm7G_associated_SNPs_11261 0 0 0 2 1 ANO1 chr11:69954510 5'GT 69954510 Upstream 47bp 10642 chr1 109716178 109716178 1 + T C LUAD 109716179 + 109716159 109716199 41 AAAGTACCCAAGCCTGTGCTGGTGAGAAACATTGCCATAAC AAAGTACCCAAGCCTGTGCCGGTGAGAAACATTGCCATAAC < 41bp 0.733102849575806 0.528464592746789 NA NA prediction 0.409276513658034 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109716179 chr1:109716178 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_11262 0 0 0 0 3 KIAA1324 chr1:109716096 3'AG 109716096 Downstream 83bp 10643 chr1 109716178 109716178 1 + T C LUAD 109716179 + 109716159 109716199 41 AAAGTACCCAAGCCTGTGCTGGTGAGAAACATTGCCATAAC AAAGTACCCAAGCCTGTGCCGGTGAGAAACATTGCCATAAC < 41bp 0.733102849575806 0.528464592746789 NA NA prediction 0.409276513658034 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109716179 chr1:109716178 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_11262 0 0 0 0 3 KIAA1324 chr1:109716179 5'GT 109716179 Upstream 2bp 10644 chr1 109716178 109716178 1 + T C LUAD 109716179 + 109716159 109716199 41 AAAGTACCCAAGCCTGTGCTGGTGAGAAACATTGCCATAAC AAAGTACCCAAGCCTGTGCCGGTGAGAAACATTGCCATAAC < 41bp 0.733102849575806 0.528464592746789 NA NA prediction 0.409276513658034 Functional Loss - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109716179 chr1:109716178 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_11262 0 0 0 0 3 KIAA1324 chr1:109716201 5'GT 109716201 Upstream 24bp 10645 chr4 77932947 77932947 1 + T C COAD 77932948 + 77932928 77932968 41 GCCTACCTGCAAGAGGAATTGAAGATTAAACGTTCTCTCTT GCCTACCTGCAAGAGGAATCGAAGATTAAACGTTCTCTCTT < 41bp 0.736473664363812 0.531839289411878 NA NA prediction 0.409268749903867 Functional Loss - SEPT11 ENSG00000138758 CDS Human protein_coding chr4:77932948 chr4:77932947 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_11263 0 0 1 0 1 SEPT11 chr4:77932888 3'AG 77932888 Downstream 60bp 10646 chr3 11059607 11059607 1 + A G LIHC 11059608 + 11059588 11059628 41 CTGGAGTGCTCCCTGGGCCAGTACACCTCCATCGGGGGGCT CTGGAGTGCTCCCTGGGCCGGTACACCTCCATCGGGGGGCT < 41bp 0.734747014489267 0.530114707045905 NA NA prediction 0.409264614886723 Functional Loss - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11059608 chr3:11059607 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11264 1 0 0 0 1 SLC6A1 chr3:11059529 3'AG 11059529 Downstream 79bp 10647 chr14 24880323 24880323 1 + T C STAD 24880324 + 24880304 24880344 41 TCCTGCCGAGGAATTGCCATGGCAGTGCAGTTTTTCTGGAA TCCTGCCGAGGAATTGCCACGGCAGTGCAGTTTTTCTGGAA < 41bp 0.742649172694375 0.538029896613524 NA NA prediction 0.409238552161702 Functional Loss - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24880324 chr14:24880323 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_11265 0 0 0 0 2 NYNRIN chr14:24880282 3'AG 24880282 Downstream 42bp 10648 chr14 24880323 24880323 1 + T C STAD 24880324 + 24880304 24880344 41 TCCTGCCGAGGAATTGCCATGGCAGTGCAGTTTTTCTGGAA TCCTGCCGAGGAATTGCCACGGCAGTGCAGTTTTTCTGGAA < 41bp 0.742649172694375 0.538029896613524 NA NA prediction 0.409238552161702 Functional Loss - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24880324 chr14:24880323 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_11265 0 0 0 0 2 NYNRIN chr14:24880412 5'GT 24880412 Upstream 90bp 10649 chr1 162737062 162737062 1 + T C CESC 162737063 + 162737043 162737083 41 GCAACACTCGGATCCTGATTGGCTGCTTGGTGGCCATCATC GCAACACTCGGATCCTGATCGGCTGCTTGGTGGCCATCATC < 41bp 0.73679755815326 0.532180854359491 NA NA prediction 0.409233407587538 Functional Loss - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162737063 chr1:162737062 synonymous SNV . 0 20 hm7G_associated_SNPs_11266 0 0 0 0 2 DDR2 chr1:162737019 3'AG 162737019 Downstream 44bp 10650 chr1 162737062 162737062 1 + T C CESC 162737063 + 162737043 162737083 41 GCAACACTCGGATCCTGATTGGCTGCTTGGTGGCCATCATC GCAACACTCGGATCCTGATCGGCTGCTTGGTGGCCATCATC < 41bp 0.73679755815326 0.532180854359491 NA NA prediction 0.409233407587538 Functional Loss - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162737063 chr1:162737062 synonymous SNV . 0 20 hm7G_associated_SNPs_11266 0 0 0 0 2 DDR2 chr1:162737149 5'GT 162737149 Upstream 88bp 10651 chr9 128692083 128692083 1 + T C UCEC 128692084 + 128692064 128692104 41 AGCTCAAACAAAGCACTTGTGAAGCAGTTATGATTTTAAGA AGCTCAAACAAAGCACTTGCGAAGCAGTTATGATTTTAAGA < 41bp 0.716812041670256 0.512196253226085 NA NA prediction 0.409231576888342 Functional Loss - PBX3 ENSG00000167081 CDS Human protein_coding chr9:128692084 chr9:128692083 synonymous SNV . 0 20 hm7G_associated_SNPs_11267 0 0 0 0 1 PBX3 chr9:128692124 5'GT 128692124 Upstream 42bp 10652 chrX 40458933 40458933 1 + T G COAD 40458934 + 40458914 40458954 41 ATGAAATTGGGAAGCGTTATGGGGAAGACTCTGAACAATTC ATGAAATTGGGAAGCGTTAGGGGGAAGACTCTGAACAATTC < 41bp 0.896709670280699 0.692113010873406 NA NA prediction 0.409193318814586 Functional Loss - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40458934 chrX:40458933 stopgain 0.976 1 20 hm7G_associated_SNPs_11269 0 0 1 0 2 ATP6AP2 chrX:40458844 3'AG 40458844 Downstream 90bp 10653 chrX 40458933 40458933 1 + T G COAD 40458934 + 40458914 40458954 41 ATGAAATTGGGAAGCGTTATGGGGAAGACTCTGAACAATTC ATGAAATTGGGAAGCGTTAGGGGGAAGACTCTGAACAATTC < 41bp 0.896709670280699 0.692113010873406 NA NA prediction 0.409193318814586 Functional Loss - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40458934 chrX:40458933 stopgain 0.976 1 20 hm7G_associated_SNPs_11269 0 0 1 0 2 ATP6AP2 chrX:40458993 5'GT 40458993 Upstream 61bp 10654 chr18 39609311 39609311 1 + T C MESO 39609312 + 39609292 39609332 41 GATAAGTCTGTCAGAGTTATGCGTTCTTTGCTGGCTGCACA GATAAGTCTGTCAGAGTTACGCGTTCTTTGCTGGCTGCACA < 41bp 0.735560432209502 0.530971086629483 NA NA prediction 0.409178691160039 Functional Loss - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39609312 chr18:39609311 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_11271 0 0 1 0 1 PIK3C3 chr18:39609405 5'GT 39609405 Upstream 95bp 10655 chr11 121474968 121474968 1 + T C LIHC 121474969 + 121474949 121474989 41 GACGGGGAGGCCTGCATTGTGCTCTCGGAGCGCTGCGACGG GACGGGGAGGCCTGCATTGCGCTCTCGGAGCGCTGCGACGG < 41bp 0.716964931774437 0.512378040769499 NA NA prediction 0.409173782009876 Functional Loss - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121474969 chr11:121474968 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_11272 0 0 1 0 2 SORL1 chr11:121474902 3'AG 121474902 Downstream 67bp 10656 chr11 121474968 121474968 1 + T C LIHC 121474969 + 121474949 121474989 41 GACGGGGAGGCCTGCATTGTGCTCTCGGAGCGCTGCGACGG GACGGGGAGGCCTGCATTGCGCTCTCGGAGCGCTGCGACGG < 41bp 0.716964931774437 0.512378040769499 NA NA prediction 0.409173782009876 Functional Loss - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121474969 chr11:121474968 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_11272 0 0 1 0 2 SORL1 chr11:121475033 5'GT 121475033 Upstream 66bp 10657 chr9 71094364 71094364 1 + T C UCEC 71094365 + 71094345 71094385 41 CTCCGAGAGAAGGATGGCCTGTGGGCTGTCTTGGTCTGGCT CTCCGAGAGAAGGATGGCCCGTGGGCTGTCTTGGTCTGGCT < 41bp 0.704973257589615 0.500398180517894 NA NA prediction 0.409150154143443 Functional Loss - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71094365 chr9:71094364 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_11274 0 0 0 0 1 PGM5 chr9:71094334 3'AG 71094334 Downstream 31bp 10658 chr16 5061250 5061250 1 + A G LIHC 5061251 + 5061231 5061271 41 AAACTTCTCTACTACTGTGAGGTGCTCGCCTCTGAGGACTT AAACTTCTCTACTACTGTGGGGTGCTCGCCTCTGAGGACTT < 41bp 0.707321703715996 0.502750752660125 NA NA prediction 0.409141902111742 Functional Loss - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5061251 chr16:5061250 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_11275 0 0 0 0 1 SEC14L5 chr16:5061274 5'GT 5061274 Upstream 25bp 10659 chr6 7577203 7577203 1 + T C UCEC 7577204 + 7577184 7577224 41 TTGTATAGAACTTGCACAGTGAAATATCTGGCAAACGAGAC TTGTATAGAACTTGCACAGCGAAATATCTGGCAAACGAGAC < 41bp 0.704568892780295 0.49530676373572 NA NA prediction 0.40913778556059 Functional Loss - DSP ENSG00000096696 CDS Human protein_coding chr6:7577204 chr6:7577203 synonymous SNV . 0 20 hm7G_associated_SNPs_11276 0 0 1 0 2 DSP chr6:7577192 3'AG 7577192 Downstream 12bp 10660 chr6 7577203 7577203 1 + T C UCEC 7577204 + 7577184 7577224 41 TTGTATAGAACTTGCACAGTGAAATATCTGGCAAACGAGAC TTGTATAGAACTTGCACAGCGAAATATCTGGCAAACGAGAC < 41bp 0.704568892780295 0.49530676373572 NA NA prediction 0.40913778556059 Functional Loss - DSP ENSG00000096696 CDS Human protein_coding chr6:7577204 chr6:7577203 synonymous SNV . 0 20 hm7G_associated_SNPs_11276 0 0 1 0 2 DSP chr6:7577275 5'GT 7577275 Upstream 73bp 10661 chr21 43546474 43546474 1 + T C UCEC 43546475 + 43546455 43546495 41 AACATGACGAACACCGTGGTGAGGACCACGCTGAGGAACGA AACATGACGAACACCGTGGCGAGGACCACGCTGAGGAACGA < 41bp 0.717660979973974 0.513108670217266 NA NA prediction 0.409104619513417 Functional Loss - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43546475 chr21:43546474 nonsynonymous SNV 0.729 3 20 hm7G_associated_SNPs_11279 0 0 0 0 1 UMODL1 chr21:43546455 3'AG 43546455 Downstream 20bp 10662 chr18 56601760 56601760 1 + T C UCEC 56601761 + 56601741 56601781 41 AATCTCCCTACACCTGCCCTGAGTGTGGGGCCATCTGCAGG AATCTCCCTACACCTGCCCCGAGTGTGGGGCCATCTGCAGG < 41bp 0.750926776878773 0.546375450520628 NA NA prediction 0.40910265271629 Functional Loss - ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56601761 chr18:56601760 synonymous SNV . 0 20 hm7G_associated_SNPs_11280 0 0 0 0 2 ZNF532 chr18:56601665 3'AG 56601665 Downstream 96bp 10663 chr18 56601760 56601760 1 + T C UCEC 56601761 + 56601741 56601781 41 AATCTCCCTACACCTGCCCTGAGTGTGGGGCCATCTGCAGG AATCTCCCTACACCTGCCCCGAGTGTGGGGCCATCTGCAGG < 41bp 0.750926776878773 0.546375450520628 NA NA prediction 0.40910265271629 Functional Loss - ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56601761 chr18:56601760 synonymous SNV . 0 20 hm7G_associated_SNPs_11280 0 0 0 0 2 ZNF532 chr18:56601846 5'GT 56601846 Upstream 87bp 10664 chr1 9656049 9656049 1 + A G SKCM 9656050 + 9656030 9656070 41 GACTGTCCCCACTGCGAGCAGTACAACGGCTTCCAGGAGGT GACTGTCCCCACTGCGAGCGGTACAACGGCTTCCAGGAGGT < 41bp 0.704550539590629 0.479088649857566 NA NA prediction 0.409101079181259 Functional Loss - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9656050 chr1:9656049 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11281 0 0 1 0 1 TMEM201 chr1:9656068 5'GT 9656068 Upstream 20bp 10665 chr20 62630430 62630430 1 + T C UCEC 62630431 + 62630411 62630451 41 TGAGTGGACAGACCGTCGTTGACCCCAAAGGCTACCTGACG TGAGTGGACAGACCGTCGTCGACCCCAAAGGCTACCTGACG < 41bp 0.7045471229834 0.497351209881622 NA NA prediction 0.409094245966801 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62630431 chr20:62630430 synonymous SNV . 0 20 hm7G_associated_SNPs_11284 0 0 1 0 2 PRPF6 chr20:62630398 3'AG 62630398 Downstream 33bp 10666 chr20 62630430 62630430 1 + T C UCEC 62630431 + 62630411 62630451 41 TGAGTGGACAGACCGTCGTTGACCCCAAAGGCTACCTGACG TGAGTGGACAGACCGTCGTCGACCCCAAAGGCTACCTGACG < 41bp 0.7045471229834 0.497351209881622 NA NA prediction 0.409094245966801 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62630431 chr20:62630430 synonymous SNV . 0 20 hm7G_associated_SNPs_11284 0 0 1 0 2 PRPF6 chr20:62630492 5'GT 62630492 Upstream 63bp 10667 chr11 63523604 63523604 1 + T C UCEC 63523605 + 63523585 63523625 41 CCCAGATTGATCACTATGTTGGCATCGCCCGAGATCAGACC CCCAGATTGATCACTATGTCGGCATCGCCCGAGATCAGACC < 41bp 0.713624371162167 0.509079563869229 NA NA prediction 0.409089614585874 Functional Loss - RTN3 ENSG00000133318 CDS Human protein_coding chr11:63523605 chr11:63523604 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11285 0 0 1 0 2 RTN3 chr11:63523584 3'AG 63523584 Downstream 21bp 10668 chr11 63523604 63523604 1 + T C UCEC 63523605 + 63523585 63523625 41 CCCAGATTGATCACTATGTTGGCATCGCCCGAGATCAGACC CCCAGATTGATCACTATGTCGGCATCGCCCGAGATCAGACC < 41bp 0.713624371162167 0.509079563869229 NA NA prediction 0.409089614585874 Functional Loss - RTN3 ENSG00000133318 CDS Human protein_coding chr11:63523605 chr11:63523604 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11285 0 0 1 0 2 RTN3 chr11:63523642 5'GT 63523642 Upstream 39bp 10669 chr9 125154535 125154535 1 + T C rs3842803 125154536 + 125154516 125154556 41 ATGCGTTGGAGTTCTACCCTGGACTGCTTCTTGAAAAGTGC ATGCGTTGGAGTTCTACCCCGGACTGCTTCTTGAAAAGTGC < 41bp 0.723052953776132 0.518520131586782 NA NA prediction 0.409065644378699 Functional Loss - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125154536 chr9:125154535 synonymous SNV . 0 20 hm7G_associated_SNPs_11287 0 0 1 0 1 PTGS1 chr9:125154468 3'AG 125154468 Downstream 68bp 10670 chr11 87013425 87013425 1 + T C UCEC 87013426 + 87013406 87013446 41 AACAAAAGAGAGAGCAACATGAGGAAAAACCCGGAAGAATG AACAAAAGAGAGAGCAACACGAGGAAAAACCCGGAAGAATG < 41bp 0.704524199749918 0.495841755105905 NA NA prediction 0.409048399499837 Functional Loss - TMEM135 ENSG00000166575 CDS Human protein_coding chr11:87013426 chr11:87013425 synonymous SNV . 0 20 hm7G_associated_SNPs_11288 0 0 1 0 2 TMEM135 chr11:87013338 3'AG 87013338 Downstream 88bp 10671 chr11 87013425 87013425 1 + T C UCEC 87013426 + 87013406 87013446 41 AACAAAAGAGAGAGCAACATGAGGAAAAACCCGGAAGAATG AACAAAAGAGAGAGCAACACGAGGAAAAACCCGGAAGAATG < 41bp 0.704524199749918 0.495841755105905 NA NA prediction 0.409048399499837 Functional Loss - TMEM135 ENSG00000166575 CDS Human protein_coding chr11:87013426 chr11:87013425 synonymous SNV . 0 20 hm7G_associated_SNPs_11288 0 0 1 0 2 TMEM135 chr11:87013484 5'GT 87013484 Upstream 60bp 10672 chr12 102056174 102056174 1 + T C LUSC 102056175 + 102056155 102056195 41 GAAGAAACAAAGCTCCAGGTGGATGAGGCTGAATTTTGATC GAAGAAACAAAGCTCCAGGCGGATGAGGCTGAATTTTGATC < 41bp 0.71409106695811 0.509571462006683 NA NA prediction 0.409039209902852 Functional Loss - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102056175 chr12:102056174 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11290 0 0 0 0 1 MYBPC1 chr12:102056136 3'AG 102056136 Downstream 39bp 10673 chrX 3002321 3002321 1 + T C rs146448496 3002322 + 3002302 3002342 41 TGAACTGCGACTCCCGAAGTGACCAGTGCCACCATCCATAT TGAACTGCGACTCCCGAAGCGACCAGTGCCACCATCCATAT < 41bp 0.704519426978027 0.498167649870273 NA NA prediction 0.409038853956055 Functional Loss - ARSF ENSG00000062096 CDS Human protein_coding chrX:3002322 chrX:3002321 synonymous SNV . 0 20 hm7G_associated_SNPs_11292 0 0 0 0 1 ARSF chrX:3002284 3'AG 3002284 Downstream 38bp 10674 chr3 30686295 30686295 1 + T C LUAD 30686296 + 30686276 30686316 41 AGTCAAGTTTCCACAACTGTGTAAATTTTGTGATGTGAGAT AGTCAAGTTTCCACAACTGCGTAAATTTTGTGATGTGAGAT < 41bp 0.704518539904703 0.497187131106869 NA NA prediction 0.409037079809405 Functional Loss - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30686296 chr3:30686295 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_11293 0 0 0 0 1 TGFBR2 chr3:30686239 3'AG 30686239 Downstream 57bp 10675 chr22 44527452 44527452 1 + A G UCEC 44527453 + 44527433 44527473 41 AGCTGCAGACGGTGCTGGAAGCAGTACATGACCTGCTGCGG AGCTGCAGACGGTGCTGGAGGCAGTACATGACCTGCTGCGG < 41bp 0.76283524544167 0.558318265123032 NA NA prediction 0.409033960637277 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44527453 chr22:44527452 synonymous SNV . 0 20 hm7G_associated_SNPs_11294 0 0 0 0 2 PARVB chr22:44527367 3'AG 44527367 Downstream 86bp 10676 chr22 44527452 44527452 1 + A G UCEC 44527453 + 44527433 44527473 41 AGCTGCAGACGGTGCTGGAAGCAGTACATGACCTGCTGCGG AGCTGCAGACGGTGCTGGAGGCAGTACATGACCTGCTGCGG < 41bp 0.76283524544167 0.558318265123032 NA NA prediction 0.409033960637277 Functional Loss - PARVB ENSG00000188677 CDS Human protein_coding chr22:44527453 chr22:44527452 synonymous SNV . 0 20 hm7G_associated_SNPs_11294 0 0 0 0 2 PARVB chr22:44527507 5'GT 44527507 Upstream 56bp 10677 chr10 124537345 124537345 1 + T G SARC 124537346 + 124537326 124537366 41 CCTGGGGCACCGTGTGTGATGACCTGTGGGACCTGAACGAA CCTGGGGCACCGTGTGTGAGGACCTGTGGGACCTGAACGAA < 41bp 0.704515085128757 0.391403669302964 NA NA prediction 0.409030170257514 Functional Loss - DMBT1P1 ENSG00000176584 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:124537346 chr10:124537345 . . 0 20 hm7G_associated_SNPs_11295 0 0 0 0 1 DMBT1P1 chr10:124537251 3'AG 124537251 Downstream 95bp 10678 chr1 6272451 6272451 1 + A G UCEC 6272452 + 6272432 6272472 41 TCGGAGCACGCCTCCTTAGAGGGCATGAGGGTCGTCTTCCA TCGGAGCACGCCTCCTTAGGGGGCATGAGGGTCGTCTTCCA < 41bp 0.748200679291433 0.543687170886092 NA NA prediction 0.409027016810683 Functional Loss - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6272452 chr1:6272451 nonsynonymous SNV 0.056 3 20 hm7G_associated_SNPs_11296 0 0 1 1 1 RNF207 chr1:6272476 5'GT 6272476 Upstream 26bp 10679 chr9 117071598 117071598 1 + T C UCEC 117071599 + 117071579 117071619 41 CACCTGCTAAGCTCCGAGGTGACCCAGCACATCACCATCCA CACCTGCTAAGCTCCGAGGCGACCCAGCACATCACCATCCA < 41bp 0.704508707980871 0.497403136382425 NA NA prediction 0.409017415961742 Functional Loss - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117071599 chr9:117071598 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_11297 0 0 1 0 1 COL27A1 chr9:117071540 3'AG 117071540 Downstream 59bp 10680 chr6 84634262 84634262 1 + T C UCEC 84634263 + 84634243 84634283 41 ATACTTCTTGGGACTTTCTTGGCCATCCCCTGAAGAATCAT ATACTTCTTGGGACTTTCTCGGCCATCCCCTGAAGAATCAT < 41bp 0.730616436563374 0.526115014119019 NA NA prediction 0.409002844888711 Functional Loss - CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84634263 chr6:84634262 synonymous SNV . 0 20 hm7G_associated_SNPs_11298 0 0 1 0 2 CYB5R4 chr6:84634189 3'AG 84634189 Downstream 74bp 10681 chr6 84634262 84634262 1 + T C UCEC 84634263 + 84634243 84634283 41 ATACTTCTTGGGACTTTCTTGGCCATCCCCTGAAGAATCAT ATACTTCTTGGGACTTTCTCGGCCATCCCCTGAAGAATCAT < 41bp 0.730616436563374 0.526115014119019 NA NA prediction 0.409002844888711 Functional Loss - CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84634263 chr6:84634262 synonymous SNV . 0 20 hm7G_associated_SNPs_11298 0 0 1 0 2 CYB5R4 chr6:84634311 5'GT 84634311 Upstream 50bp 10682 chr17 76129939 76129939 1 + T C UCEC 76129940 + 76129920 76129960 41 CTCCTGCCCCGCAGGATGGTGAAGGGGCTGCCGCAGAAGAC CTCCTGCCCCGCAGGATGGCGAAGGGGCTGCCGCAGAAGAC < 41bp 0.750728923192528 0.546233724694674 NA NA prediction 0.408990396995706 Functional Loss - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76129940 chr17:76129939 nonsynonymous SNV 0.905 0 20 hm7G_associated_SNPs_11299 0 0 0 0 1 TMC8 chr17:76129934 3'AG 76129934 Downstream 6bp 10683 chr12 645395 645395 1 + T C COAD 645396 + 645376 645416 41 TCCCCTAGGACCACGACATTGACCAAGGGGTGAGCAGTAAC TCCCCTAGGACCACGACATCGACCAAGGGGTGAGCAGTAAC < 41bp 0.730217409488005 0.525722545268311 NA NA prediction 0.408989728439387 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:645396 chr12:645395 synonymous SNV . 0 20 hm7G_associated_SNPs_11300 0 0 0 0 2 B4GALNT3 chr12:645384 3'AG 645384 Downstream 12bp 10684 chr12 645395 645395 1 + T C COAD 645396 + 645376 645416 41 TCCCCTAGGACCACGACATTGACCAAGGGGTGAGCAGTAAC TCCCCTAGGACCACGACATCGACCAAGGGGTGAGCAGTAAC < 41bp 0.730217409488005 0.525722545268311 NA NA prediction 0.408989728439387 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:645396 chr12:645395 synonymous SNV . 0 20 hm7G_associated_SNPs_11300 0 0 0 0 2 B4GALNT3 chr12:645461 5'GT 645461 Upstream 67bp 10685 chrX 69639927 69639927 1 + T G UCEC 69639928 + 69639908 69639948 41 CTAGATCCTGAAAGAGATGTGCGATGTGGAGCAGGTGCTGT CTAGATCCTGAAAGAGATGGGCGATGTGGAGCAGGTGCTGT < 41bp 0.898769808013033 0.694283547906318 NA NA prediction 0.408972520213429 Functional Loss - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639928 chrX:69639927 nonsynonymous SNV 0.974 0 20 hm7G_associated_SNPs_11302 0 0 1 0 1 KIF4A chrX:69639912 3'AG 69639912 Downstream 16bp 10686 chr10 73115961 73115961 1 + T C UCEC 73115962 + 73115942 73115982 41 GTCTTCCTCGTGCTCTGCATGGGACTCTACCTGCTGCTGTC GTCTTCCTCGTGCTCTGCACGGGACTCTACCTGCTGCTGTC < 41bp 0.722685689204438 0.518201599177457 NA NA prediction 0.408968180053962 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115962 chr10:73115961 nonsynonymous SNV 0.061 1 20 hm7G_associated_SNPs_11303 0 0 0 0 2 SLC29A3 chr10:73116000 5'GT 73116000 Upstream 40bp 10687 chr10 73115961 73115961 1 + T C UCEC 73115962 + 73115942 73115982 41 GTCTTCCTCGTGCTCTGCATGGGACTCTACCTGCTGCTGTC GTCTTCCTCGTGCTCTGCACGGGACTCTACCTGCTGCTGTC < 41bp 0.722685689204438 0.518201599177457 NA NA prediction 0.408968180053962 Functional Loss - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115962 chr10:73115961 nonsynonymous SNV 0.061 1 20 hm7G_associated_SNPs_11303 0 0 0 0 2 SLC29A3 chr10:73116006 5'GT 73116006 Upstream 46bp 10688 chr1 147083608 147083608 1 + T G rs183558631 147083609 + 147083589 147083629 41 TCGGTGAGCCTGTCCCGTTTGTGACTGCAAGCTCAGGATTT TCGGTGAGCCTGTCCCGTTGGTGACTGCAAGCTCAGGATTT < 41bp 0.70447438970496 0.475774434873777 NA NA prediction 0.40894877940992 Functional Loss - BCL9 ENSG00000116128 UTR5 Human protein_coding chr1:147083609 chr1:147083608 . . 0 20 hm7G_associated_SNPs_11304 0 0 1 0 1 BCL9 chr1:147083688 5'GT 147083688 Upstream 81bp 10689 chr6 27222547 27222547 1 + A G UCEC 27222548 + 27222528 27222568 41 CAGCTAGACCTATGTGAGCAGGTGTTTGGGCTCTCAGCCTT CAGCTAGACCTATGTGAGCGGGTGTTTGGGCTCTCAGCCTT < 41bp 0.743100937822853 0.538642570670704 NA NA prediction 0.408916734304297 Functional Loss - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27222548 chr6:27222547 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_11307 0 0 1 2 1 PRSS16 chr6:27222472 3'AG 27222472 Downstream 76bp 10690 chr4 26741511 26741511 1 + T C UCEC 26741512 + 26741492 26741532 41 CACTTTGTTTTCTATACCATGAACCTTCCAAATTGTATCAG CACTTTGTTTTCTATACCACGAACCTTCCAAATTGTATCAG < 41bp 0.707333545677733 0.502879716712828 NA NA prediction 0.408907657929809 Functional Loss - TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26741512 chr4:26741511 synonymous SNV . 0 20 hm7G_associated_SNPs_11308 0 0 1 0 2 TBC1D19 chr4:26741486 3'AG 26741486 Downstream 26bp 10691 chr4 26741511 26741511 1 + T C UCEC 26741512 + 26741492 26741532 41 CACTTTGTTTTCTATACCATGAACCTTCCAAATTGTATCAG CACTTTGTTTTCTATACCACGAACCTTCCAAATTGTATCAG < 41bp 0.707333545677733 0.502879716712828 NA NA prediction 0.408907657929809 Functional Loss - TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26741512 chr4:26741511 synonymous SNV . 0 20 hm7G_associated_SNPs_11308 0 0 1 0 2 TBC1D19 chr4:26741595 5'GT 26741595 Upstream 85bp 10692 chr17 43323872 43323872 1 + T C UCEC 43323873 + 43323853 43323893 41 CTGCCCCACCCCCACTCAGTGATCAAGACGGTGCCCTTCAC CTGCCCCACCCCCACTCAGCGATCAAGACGGTGCCCTTCAC < 41bp 0.706071879985243 0.501620405558792 NA NA prediction 0.408902948852901 Functional Loss - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323873 chr17:43323872 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_11309 0 0 1 0 2 FMNL1 chr17:43323872 3'AG 43323872 Downstream 1bp 10693 chr17 43323872 43323872 1 + T C UCEC 43323873 + 43323853 43323893 41 CTGCCCCACCCCCACTCAGTGATCAAGACGGTGCCCTTCAC CTGCCCCACCCCCACTCAGCGATCAAGACGGTGCCCTTCAC < 41bp 0.706071879985243 0.501620405558792 NA NA prediction 0.408902948852901 Functional Loss - FMNL1 ENSG00000184922 CDS Human antisense chr17:43323873 chr17:43323872 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_11309 0 0 1 0 2 FMNL1 chr17:43323971 5'GT 43323971 Upstream 100bp 10694 chr19 42847702 42847702 1 + T C STAD 42847703 + 42847683 42847723 41 GCAGCGTCCTGTTGGTGGCTGGGGGGTACAGCGGCCGGCCC GCAGCGTCCTGTTGGTGGCCGGGGGGTACAGCGGCCGGCCC < 41bp 0.728419537864716 0.52397283074318 NA NA prediction 0.408893414243073 Functional Loss - MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42847703 chr19:42847702 synonymous SNV . 0 20 hm7G_associated_SNPs_11310 0 0 0 0 2 MEGF8 chr19:42847629 3'AG 42847629 Downstream 74bp 10695 chr19 42847702 42847702 1 + T C STAD 42847703 + 42847683 42847723 41 GCAGCGTCCTGTTGGTGGCTGGGGGGTACAGCGGCCGGCCC GCAGCGTCCTGTTGGTGGCCGGGGGGTACAGCGGCCGGCCC < 41bp 0.728419537864716 0.52397283074318 NA NA prediction 0.408893414243073 Functional Loss - MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42847703 chr19:42847702 synonymous SNV . 0 20 hm7G_associated_SNPs_11310 0 0 0 0 2 MEGF8 chr19:42847783 5'GT 42847783 Upstream 82bp 10696 chr8 74209461 74209461 1 + T C rs145171413 74209462 + 74209442 74209482 41 GGAAGAAATTCTGCCCCACTGTAACTTGCAGGTTTTTACCT GGAAGAAATTCTGCCCCACCGTAACTTGCAGGTTTTTACCT < 41bp 0.706594873035531 0.502152580858146 NA NA prediction 0.408884584354769 Functional Loss - RDH10 ENSG00000121039 CDS Human protein_coding chr8:74209462 chr8:74209461 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11311 0 0 1 0 1 RDH10 chr8:74209429 3'AG 74209429 Downstream 33bp 10697 chr7 141758074 141758074 1 + T C rs2961078 141758075 + 141758055 141758095 41 GTCGCTATGGCTACCAGAATGACTCTGAGATCGCCAGCTTG GTCGCTATGGCTACCAGAACGACTCTGAGATCGCCAGCTTG < 41bp 0.720196346193901 0.515759622932894 NA NA prediction 0.408873446522014 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141758075 chr7:141758074 synonymous SNV . 0 20 hm7G_associated_SNPs_11312 0 0 0 0 2 MGAM chr7:141758003 3'AG 141758003 Downstream 72bp 10698 chr7 141758074 141758074 1 + T C rs2961078 141758075 + 141758055 141758095 41 GTCGCTATGGCTACCAGAATGACTCTGAGATCGCCAGCTTG GTCGCTATGGCTACCAGAACGACTCTGAGATCGCCAGCTTG < 41bp 0.720196346193901 0.515759622932894 NA NA prediction 0.408873446522014 Functional Loss - MGAM ENSG00000257335 CDS Human protein_coding chr7:141758075 chr7:141758074 synonymous SNV . 0 20 hm7G_associated_SNPs_11312 0 0 0 0 2 MGAM chr7:141758128 5'GT 141758128 Upstream 55bp 10699 chr8 92307874 92307874 1 + T C LUAD 92307875 + 92307855 92307895 41 TGCTGGGCTTATCCGACTTTGAAATGCAAAGGATCCACGTT TGCTGGGCTTATCCGACTTCGAAATGCAAAGGATCCACGTT < 41bp 0.704425214674244 0.495201867222038 NA NA prediction 0.408850429348488 Functional Loss - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92307875 chr8:92307874 synonymous SNV . 0 20 hm7G_associated_SNPs_11314 0 0 0 0 1 SLC26A7 chr8:92307931 5'GT 92307931 Upstream 58bp 10700 chr17 28811743 28811743 1 + T C STAD 28811744 + 28811724 28811764 41 CAGGTGTCCCCTCCTTGAATGCAGCCCTGATGCATACATTA CAGGTGTCCCCTCCTTGAACGCAGCCCTGATGCATACATTA < 41bp 0.704419505015917 0.493057138192899 NA NA prediction 0.408839010031833 Functional Loss - GOSR1 ENSG00000108587 CDS Human protein_coding chr17:28811744 chr17:28811743 synonymous SNV . 0 20 hm7G_associated_SNPs_11315 0 0 1 0 2 GOSR1 chr17:28811681 3'AG 28811681 Downstream 63bp 10701 chr17 28811743 28811743 1 + T C STAD 28811744 + 28811724 28811764 41 CAGGTGTCCCCTCCTTGAATGCAGCCCTGATGCATACATTA CAGGTGTCCCCTCCTTGAACGCAGCCCTGATGCATACATTA < 41bp 0.704419505015917 0.493057138192899 NA NA prediction 0.408839010031833 Functional Loss - GOSR1 ENSG00000108587 CDS Human protein_coding chr17:28811744 chr17:28811743 synonymous SNV . 0 20 hm7G_associated_SNPs_11315 0 0 1 0 2 GOSR1 chr17:28811788 5'GT 28811788 Upstream 46bp 10702 chr17 57812798 57812798 1 + T C STAD 57812799 + 57812779 57812819 41 ACCTTGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAA ACCTTGCAGTATTTTTCTCCGGAAATCCTTGTAATCTTGAA < 41bp 0.750524627819367 0.54610558638938 NA NA prediction 0.408838082859973 Functional Loss - VMP1 ENSG00000062716 CDS Human protein_coding chr17:57812799 chr17:57812798 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11316 0 0 1 0 2 VMP1 chr17:57812699 3'AG 57812699 Downstream 100bp 10703 chr17 57812798 57812798 1 + T C STAD 57812799 + 57812779 57812819 41 ACCTTGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAA ACCTTGCAGTATTTTTCTCCGGAAATCCTTGTAATCTTGAA < 41bp 0.750524627819367 0.54610558638938 NA NA prediction 0.408838082859973 Functional Loss - VMP1 ENSG00000062716 CDS Human protein_coding chr17:57812799 chr17:57812798 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11316 0 0 1 0 2 VMP1 chr17:57812834 5'GT 57812834 Upstream 37bp 10704 chr20 57273786 57273786 1 + T C UCEC 57273787 + 57273767 57273807 41 CGGCTAGCAGCCCGCATCGTGGACACACCCTGCAATGAGAT CGGCTAGCAGCCCGCATCGCGGACACACCCTGCAATGAGAT < 41bp 0.757735022971894 0.553321755424261 NA NA prediction 0.408826535095265 Functional Loss - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57273787 chr20:57273786 nonsynonymous SNV 0.947 4 20 hm7G_associated_SNPs_11317 0 0 1 0 2 NPEPL1 chr20:57273740 3'AG 57273740 Downstream 47bp 10705 chr20 57273786 57273786 1 + T C UCEC 57273787 + 57273767 57273807 41 CGGCTAGCAGCCCGCATCGTGGACACACCCTGCAATGAGAT CGGCTAGCAGCCCGCATCGCGGACACACCCTGCAATGAGAT < 41bp 0.757735022971894 0.553321755424261 NA NA prediction 0.408826535095265 Functional Loss - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57273787 chr20:57273786 nonsynonymous SNV 0.947 4 20 hm7G_associated_SNPs_11317 0 0 1 0 2 NPEPL1 chr20:57273829 5'GT 57273829 Upstream 44bp 10706 chr20 30734648 30734648 1 + A G LIHC 30734649 + 30734629 30734669 41 ATTGCCAACTACAACAAGGAGGATGACATTGTACGAGGTCT ATTGCCAACTACAACAAGGGGGATGACATTGTACGAGGTCT < 41bp 0.708035724231447 0.503629218167273 NA NA prediction 0.408813012128348 Functional Loss - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30734649 chr20:30734648 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11319 0 0 1 0 1 TM9SF4 chr20:30734588 3'AG 30734588 Downstream 61bp 10707 chr17 45008540 45008540 1 + A G OV 45008541 + 45008521 45008561 41 CTGGAGATTTTGTCCAGCAAGGAGCCCCCTAACAAAAGGCA CTGGAGATTTTGTCCAGCAGGGAGCCCCCTAACAAAAGGCA < 41bp 0.704404002006995 0.497526951631207 NA NA prediction 0.408808004013989 Functional Loss - GOSR2 ENSG00000108433;ENSG00000262633 CDS Human other chr17:45008541 chr17:45008540 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11321 0 0 1 0 2 GOSR2 chr17:45008465 3'AG 45008465 Downstream 76bp 10708 chr17 45008540 45008540 1 + A G OV 45008541 + 45008521 45008561 41 CTGGAGATTTTGTCCAGCAAGGAGCCCCCTAACAAAAGGCA CTGGAGATTTTGTCCAGCAGGGAGCCCCCTAACAAAAGGCA < 41bp 0.704404002006995 0.497526951631207 NA NA prediction 0.408808004013989 Functional Loss - GOSR2 ENSG00000108433;ENSG00000262633 CDS Human other chr17:45008541 chr17:45008540 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11321 0 0 1 0 2 GOSR2 chr17:45008573 5'GT 45008573 Upstream 34bp 10709 chr3 160137198 160137198 1 + T C UCEC 160137199 + 160137179 160137219 41 GAAACAAACTTTAAAAGTTTGGTTCATGATCTCTTTCAAAA GAAACAAACTTTAAAAGTTCGGTTCATGATCTCTTTCAAAA < 41bp 0.704401217207958 0.498593861228436 NA NA prediction 0.408802434415916 Functional Loss - SMC4 ENSG00000113810 CDS Human protein_coding chr3:160137199 chr3:160137198 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_11322 0 0 1 0 1 SMC4 chr3:160137146 3'AG 160137146 Downstream 53bp 10710 chr16 57691325 57691325 1 + T C ESCA 57691326 + 57691306 57691346 41 GCCGTGCACAAGCACTACCTGAGCCTCCTCTCCTACGTGGG GCCGTGCACAAGCACTACCCGAGCCTCCTCTCCTACGTGGG < 41bp 0.730495165181962 0.52610964555174 NA NA prediction 0.408771039260444 Functional Loss - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57691326 chr16:57691325 nonsynonymous SNV 0.439 4 20 hm7G_associated_SNPs_11325 0 0 1 0 2 ADGRG1 chr16:57691285 3'AG 57691285 Downstream 41bp 10711 chr16 57691325 57691325 1 + T C ESCA 57691326 + 57691306 57691346 41 GCCGTGCACAAGCACTACCTGAGCCTCCTCTCCTACGTGGG GCCGTGCACAAGCACTACCCGAGCCTCCTCTCCTACGTGGG < 41bp 0.730495165181962 0.52610964555174 NA NA prediction 0.408771039260444 Functional Loss - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57691326 chr16:57691325 nonsynonymous SNV 0.439 4 20 hm7G_associated_SNPs_11325 0 0 1 0 2 ADGRG1 chr16:57691403 5'GT 57691403 Upstream 79bp 10712 chr1 182835593 182835593 1 + T C UCEC 182835594 + 182835574 182835614 41 CTCAGCCCAGAAGAATCAGTGCGGTTTCTGTGGCAGAGCGA CTCAGCCCAGAAGAATCAGCGCGGTTTCTGTGGCAGAGCGA < 41bp 0.725256988225724 0.520876462932613 NA NA prediction 0.408761050586222 Functional Loss - DHX9 ENSG00000135829 CDS Human protein_coding chr1:182835594 chr1:182835593 synonymous SNV . 0 20 hm7G_associated_SNPs_11327 0 0 1 0 1 DHX9 chr1:182835579 3'AG 182835579 Downstream 15bp 10713 chr19 49631295 49631295 1 + A G LUSC 49631296 + 49631276 49631316 41 CACAGGACGGGTTGGCTACAGCGCAGCTGCGGCTGCGCGAG CACAGGACGGGTTGGCTACGGCGCAGCTGCGGCTGCGCGAG < 41bp 0.704380022825384 0.476424244182127 NA NA prediction 0.408760045650769 Functional Loss - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49631296 chr19:49631295 synonymous SNV . 0 20 hm7G_associated_SNPs_11328 0 0 0 0 1 PPFIA3 chr19:49631370 5'GT 49631370 Upstream 76bp 10714 chr6 74491008 74491008 1 + T C LGG 74491009 + 74490989 74491029 41 GACTCTGGGTATTGACAGATGCAAACCTCACGAAGGATTAT GACTCTGGGTATTGACAGACGCAAACCTCACGAAGGATTAT < 41bp 0.712533210823962 0.508154864666865 NA NA prediction 0.408756692314194 Functional Loss - CD109 ENSG00000156535 CDS Human protein_coding chr6:74491009 chr6:74491008 synonymous SNV . 0 20 hm7G_associated_SNPs_11329 0 0 0 0 2 CD109 chr6:74490982 3'AG 74490982 Downstream 27bp 10715 chr6 74491008 74491008 1 + T C LGG 74491009 + 74490989 74491029 41 GACTCTGGGTATTGACAGATGCAAACCTCACGAAGGATTAT GACTCTGGGTATTGACAGACGCAAACCTCACGAAGGATTAT < 41bp 0.712533210823962 0.508154864666865 NA NA prediction 0.408756692314194 Functional Loss - CD109 ENSG00000156535 CDS Human protein_coding chr6:74491009 chr6:74491008 synonymous SNV . 0 20 hm7G_associated_SNPs_11329 0 0 0 0 2 CD109 chr6:74491042 5'GT 74491042 Upstream 35bp 10716 chr17 9783712 9783712 1 + T C UCEC 9783713 + 9783693 9783733 41 AGATTGGCAAAATCAACACTGGTCCTCATTCCTTTATTGGG AGATTGGCAAAATCAACACCGGTCCTCATTCCTTTATTGGG < 41bp 0.704376225096681 0.499805814405584 NA NA prediction 0.408752450193362 Functional Loss - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9783713 chr17:9783712 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_11330 0 0 0 0 1 GLP2R chr17:9783695 3'AG 9783695 Downstream 18bp 10717 chr11 60971041 60971041 1 + A G rs78669446 60971042 + 60971022 60971062 41 GACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCTGGGTCT GACCCGGGAAGAACCATGAGGTGGCTGCTGCTGCTGGGTCT < 41bp 0.743457978921523 0.539082376455023 NA NA prediction 0.408751204932999 Functional Loss - PGA3 ENSG00000229859 CDS Human protein_coding chr11:60971042 chr11:60971041 nonsynonymous SNV 0.957 1 20 hm7G_associated_SNPs_11331 0 0 0 0 1 PGA3 chr11:60971092 5'GT 60971092 Upstream 52bp 10718 chr12 57908506 57908506 1 + T C UCEC 57908507 + 57908487 57908527 41 CCTACTCCCAACCAAGAGCTGGGATGTTTGTGTCTAAGTTC CCTACTCCCAACCAAGAGCCGGGATGTTTGTGTCTAAGTTC < 41bp 0.707620235734827 0.503251631284713 NA NA prediction 0.408737208900227 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57908507 chr12:57908506 synonymous SNV . 0 20 hm7G_associated_SNPs_11332 0 0 1 0 1 MARS chr12:57908503 3'AG 57908503 Downstream 4bp 10719 chr8 86027662 86027662 1 + T C BLCA 86027663 + 86027643 86027683 41 ATCGATGAGTTAGTTCCCTTGGAACAGTTTGCAAGTACACC ATCGATGAGTTAGTTCCCTCGGAACAGTTTGCAAGTACACC < 41bp 0.704364413807016 0.497169286490383 NA NA prediction 0.408728827614032 Functional Loss - LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86027663 chr8:86027662 nonsynonymous SNV 0.052 2 20 hm7G_associated_SNPs_11333 0 0 1 0 1 LRRCC1 chr8:86027610 3'AG 86027610 Downstream 53bp 10720 chrX 155235004 155235004 1 + T C UCEC 155235005 + 155234985 155235025 41 ATACTTGAAGCCTTTGAGCTGGACCCTGGCTTTATCCATGA ATACTTGAAGCCTTTGAGCCGGACCCTGGCTTTATCCATGA < 41bp 0.744064307211792 0.539703470895277 NA NA prediction 0.408721672633029 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155235005 chrX:155235004 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_11335 0 0 0 0 1 IL9R chrX:155234943 3'AG 155234943 Downstream 62bp 10721 chr11 122817277 122817277 1 + A G UCEC 122817278 + 122817258 122817298 41 TGGCTCACCCAGATAATGGAGCAGCATCAGCAAGCCTTGGT TGGCTCACCCAGATAATGGGGCAGCATCAGCAAGCCTTGGT < 41bp 0.720516646689923 0.516158088972453 NA NA prediction 0.408717115434939 Functional Loss - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817278 chr11:122817277 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_11336 0 0 0 0 1 C11orf63 chr11:122817206 3'AG 122817206 Downstream 72bp 10722 chr17 74898723 74898723 1 + T C ESCA 74898724 + 74898704 74898744 41 GTGAAGGTGGACCAGATCCTGCGCCACAGTCTGCTCCTGCA GTGAAGGTGGACCAGATCCCGCGCCACAGTCTGCTCCTGCA < 41bp 0.745034086782994 0.540687009000823 NA NA prediction 0.408694155564342 Functional Loss - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74898724 chr17:74898723 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_11338 0 0 0 0 1 MGAT5B chr17:74898637 3'AG 74898637 Downstream 87bp 10723 chr17 73205976 73205976 1 + T C rs34126097 73205977 + 73205957 73205997 41 TCATCCGTAAGGATGTAGATGTTTACTCTCAAATCTTGAGA TCATCCGTAAGGATGTAGACGTTTACTCTCAAATCTTGAGA < 41bp 0.709917534868927 0.505574456335928 NA NA prediction 0.408686157065998 Functional Loss - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73205977 chr17:73205976 synonymous SNV . 0 20 hm7G_associated_SNPs_11339 0 0 1 0 1 NUP85 chr17:73205918 3'AG 73205918 Downstream 59bp 10724 chr1 43649336 43649336 1 + T C rs75528102 43649337 + 43649317 43649357 41 TTAAGCTTCTCCGTTTTGCTGAGGGAACCCTGAAGCAAACC TTAAGCTTCTCCGTTTTGCCGAGGGAACCCTGAAGCAAACC < 41bp 0.720770571584747 0.516444954498423 NA NA prediction 0.408651234172648 Functional Loss - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43649337 chr1:43649336 synonymous SNV . 0 20 hm7G_associated_SNPs_11341 0 0 0 0 1 CFAP57 chr1:43649262 3'AG 43649262 Downstream 75bp 10725 chr21 47320958 47320958 1 + T C UCEC 47320959 + 47320939 47320979 41 GAAACTGCCCAGAGAGGATTGTGACCATCACAGGCCCCACA GAAACTGCCCAGAGAGGATCGTGACCATCACAGGCCCCACA < 41bp 0.716177047484566 0.511853624097568 NA NA prediction 0.408646846773997 Functional Loss - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47320959 chr21:47320958 synonymous SNV . 0 20 hm7G_associated_SNPs_11342 0 0 0 0 1 PCBP3 chr21:47321027 5'GT 47321027 Upstream 70bp 10726 chr1 156104723 156104723 1 + T G OV 156104724 + 156104704 156104744 41 GCCCAGCATGAGGACCAGGTGGAGCAGTATAAGAAGGAGCT GCCCAGCATGAGGACCAGGGGGAGCAGTATAAGAAGGAGCT < 41bp 0.912843202814359 0.708521893432402 NA NA prediction 0.408642618763916 Functional Loss - LMNA ENSG00000160789 CDS Human protein_coding chr1:156104724 chr1:156104723 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11343 0 0 1 0 1 LMNA chr1:156104766 5'GT 156104766 Upstream 44bp 10727 chr3 131080830 131080830 1 + A G rs12637639 131080831 + 131080811 131080851 41 CTGGCGCTGGGGCCAGGCTAGAGGCATGCCTGCTATGCGCT CTGGCGCTGGGGCCAGGCTGGAGGCATGCCTGCTATGCGCT < 41bp 0.724505765908094 0.520184583724429 NA NA prediction 0.408642364367329 Functional Loss - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131080831 chr3:131080830 . . 0 20 hm7G_associated_SNPs_11344 0 0 1 0 1 NUDT16P1 chr3:131080912 5'GT 131080912 Upstream 83bp 10728 chr3 136708320 136708320 1 + T C LIHC 136708321 + 136708301 136708341 41 GGATGGAGATCACCAAAGATGGCTTCCACCTGGTTATTGAG GGATGGAGATCACCAAAGACGGCTTCCACCTGGTTATTGAG < 41bp 0.746615555372006 0.542299455085438 NA NA prediction 0.408632200573135 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136708321 chr3:136708320 synonymous SNV . 0 20 hm7G_associated_SNPs_11345 0 0 0 1 2 IL20RB chr3:136708283 3'AG 136708283 Downstream 38bp 10729 chr3 136708320 136708320 1 + T C LIHC 136708321 + 136708301 136708341 41 GGATGGAGATCACCAAAGATGGCTTCCACCTGGTTATTGAG GGATGGAGATCACCAAAGACGGCTTCCACCTGGTTATTGAG < 41bp 0.746615555372006 0.542299455085438 NA NA prediction 0.408632200573135 Functional Loss - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136708321 chr3:136708320 synonymous SNV . 0 20 hm7G_associated_SNPs_11345 0 0 0 1 2 IL20RB chr3:136708407 5'GT 136708407 Upstream 88bp 10730 chr1 179311262 179311262 1 + T C UCEC 179311263 + 179311243 179311283 41 TTGTAGATTCGTTTTGTAATGAAGGCCCACTCATTTGTCAG TTGTAGATTCGTTTTGTAACGAAGGCCCACTCATTTGTCAG < 41bp 0.704304724037075 0.490292641214673 NA NA prediction 0.40860944807415 Functional Loss - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179311263 chr1:179311262 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_11348 0 0 1 0 2 SOAT1 chr1:179311249 3'AG 179311249 Downstream 14bp 10731 chr1 179311262 179311262 1 + T C UCEC 179311263 + 179311243 179311283 41 TTGTAGATTCGTTTTGTAATGAAGGCCCACTCATTTGTCAG TTGTAGATTCGTTTTGTAACGAAGGCCCACTCATTTGTCAG < 41bp 0.704304724037075 0.490292641214673 NA NA prediction 0.40860944807415 Functional Loss - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179311263 chr1:179311262 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_11348 0 0 1 0 2 SOAT1 chr1:179311327 5'GT 179311327 Upstream 66bp 10732 chr10 75528787 75528787 1 + T C COAD 75528788 + 75528768 75528808 41 TCCGTGCTGTAGATTTCTTTGGAGCTTTCTACATGAGCAAC TCCGTGCTGTAGATTTCTTCGGAGCTTTCTACATGAGCAAC < 41bp 0.762303573168973 0.558000735262402 NA NA prediction 0.408605675813142 Functional Loss - SEC24C ENSG00000176986 CDS Human protein_coding chr10:75528788 chr10:75528787 synonymous SNV . 0 20 hm7G_associated_SNPs_11349 0 0 1 0 1 SEC24C chr10:75528765 3'AG 75528765 Downstream 23bp 10733 chr5 10448476 10448476 1 + T C ESCA 10448477 + 10448457 10448497 41 GGCCTGACTCAAGGACTCCTGAAAGTTTTGCACAAGCAGGT GGCCTGACTCAAGGACTCCCGAAAGTTTTGCACAAGCAGGT < 41bp 0.72360784586297 0.51930798937082 NA NA prediction 0.408599712984301 Functional Loss - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10448477 chr5:10448476 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_11350 0 0 0 0 1 ROPN1L chr5:10448495 5'GT 10448495 Upstream 20bp 10734 chr17 40817755 40817755 1 + T C COAD 40817756 + 40817736 40817776 41 ACCCCGGCTACATGAACAATGACCTCATCGGCCTCATCGCC ACCCCGGCTACATGAACAACGACCTCATCGGCCTCATCGCC < 41bp 0.726004574176248 0.52171746636383 NA NA prediction 0.408574215624836 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817756 chr17:40817755 synonymous SNV . 0 20 hm7G_associated_SNPs_11351 0 0 0 0 2 TUBG2 chr17:40817696 3'AG 40817696 Downstream 60bp 10735 chr17 40817755 40817755 1 + T C COAD 40817756 + 40817736 40817776 41 ACCCCGGCTACATGAACAATGACCTCATCGGCCTCATCGCC ACCCCGGCTACATGAACAACGACCTCATCGGCCTCATCGCC < 41bp 0.726004574176248 0.52171746636383 NA NA prediction 0.408574215624836 Functional Loss - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817756 chr17:40817755 synonymous SNV . 0 20 hm7G_associated_SNPs_11351 0 0 0 0 2 TUBG2 chr17:40817845 5'GT 40817845 Upstream 91bp 10736 chr14 100384157 100384157 1 + T C LIHC 100384158 + 100384138 100384178 41 GTTTTCATCCTTCAGGGTCTGTGGTTGCAGTCGGAACACTC GTTTTCATCCTTCAGGGTCCGTGGTTGCAGTCGGAACACTC < 41bp 0.718735983414601 0.514462721228174 NA NA prediction 0.408546524372855 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100384158 chr14:100384157 synonymous SNV . 0 20 hm7G_associated_SNPs_11353 0 0 0 0 2 EML1 chr14:100384119 3'AG 100384119 Downstream 39bp 10737 chr14 100384157 100384157 1 + T C LIHC 100384158 + 100384138 100384178 41 GTTTTCATCCTTCAGGGTCTGTGGTTGCAGTCGGAACACTC GTTTTCATCCTTCAGGGTCCGTGGTTGCAGTCGGAACACTC < 41bp 0.718735983414601 0.514462721228174 NA NA prediction 0.408546524372855 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100384158 chr14:100384157 synonymous SNV . 0 20 hm7G_associated_SNPs_11353 0 0 0 0 2 EML1 chr14:100384186 5'GT 100384186 Upstream 30bp 10738 chr2 109066108 109066108 1 + T C COAD 109066109 + 109066089 109066129 41 GATCTTGTTCAAGATGGGGTGGCTTCACCAGCTACCCCTGG GATCTTGTTCAAGATGGGGCGGCTTCACCAGCTACCCCTGG < 41bp 0.720414726851803 0.516142457820983 NA NA prediction 0.40854453806164 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109066109 chr2:109066108 nonsynonymous SNV 0.658 0 20 hm7G_associated_SNPs_11354 0 0 1 0 2 GCC2 chr2:109066089 3'AG 109066089 Downstream 20bp 10739 chr2 109066108 109066108 1 + T C COAD 109066109 + 109066089 109066129 41 GATCTTGTTCAAGATGGGGTGGCTTCACCAGCTACCCCTGG GATCTTGTTCAAGATGGGGCGGCTTCACCAGCTACCCCTGG < 41bp 0.720414726851803 0.516142457820983 NA NA prediction 0.40854453806164 Functional Loss - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109066109 chr2:109066108 nonsynonymous SNV 0.658 0 20 hm7G_associated_SNPs_11354 0 0 1 0 2 GCC2 chr2:109066145 5'GT 109066145 Upstream 38bp 10740 chr11 71498648 71498648 1 + A G rs12277291 71498649 + 71498629 71498669 41 TCAAGCGCCGCTTCCTGGCAGCGCGCGCCCTGCGCTCCTTC TCAAGCGCCGCTTCCTGGCGGCGCGCGCCCTGCGCTCCTTC < 41bp 0.704270823553567 0.472643056665139 NA NA prediction 0.408541647107135 Functional Loss - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71498649 chr11:71498648 synonymous SNV . 0 20 hm7G_associated_SNPs_11355 0 0 0 0 1 FAM86C1 chr11:71498678 5'GT 71498678 Upstream 31bp 10741 chr2 42513474 42513474 1 + T C LUSC 42513475 + 42513455 42513495 41 CACTGCAGATTATTGGACTTGGCACTTTTGAGCGTGGAGTA CACTGCAGATTATTGGACTCGGCACTTTTGAGCGTGGAGTA < 41bp 0.738096114017129 0.533842495644699 NA NA prediction 0.408507236744861 Functional Loss - EML4 ENSG00000143924 CDS Human protein_coding chr2:42513475 chr2:42513474 synonymous SNV . 0 20 hm7G_associated_SNPs_11356 0 0 1 0 2 EML4 chr2:42513409 3'AG 42513409 Downstream 66bp 10742 chr2 42513474 42513474 1 + T C LUSC 42513475 + 42513455 42513495 41 CACTGCAGATTATTGGACTTGGCACTTTTGAGCGTGGAGTA CACTGCAGATTATTGGACTCGGCACTTTTGAGCGTGGAGTA < 41bp 0.738096114017129 0.533842495644699 NA NA prediction 0.408507236744861 Functional Loss - EML4 ENSG00000143924 CDS Human protein_coding chr2:42513475 chr2:42513474 synonymous SNV . 0 20 hm7G_associated_SNPs_11356 0 0 1 0 2 EML4 chr2:42513519 5'GT 42513519 Upstream 46bp 10743 chr1 16380202 16380202 1 + T G BLCA 16380203 + 16380183 16380223 41 CTGGCCAAGGACATGCCACTGGAGGAGGTGGTCAAGGTTGT CTGGCCAAGGACATGCCACGGGAGGAGGTGGTCAAGGTTGT < 41bp 0.915496880268396 0.711265731516601 NA NA prediction 0.408462297503591 Functional Loss - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16380203 chr1:16380202 nonsynonymous SNV 0.837 4 20 hm7G_associated_SNPs_11362 0 0 0 0 1 CLCNKB chr1:16380134 3'AG 16380134 Downstream 69bp 10744 chr9 140729234 140729234 1 + T C HNSC 140729235 + 140729215 140729255 41 CCCTCCCCAGGTTTGACTATGGAGAGCGCTTCTGGGACATC CCCTCCCCAGGTTTGACTACGGAGAGCGCTTCTGGGACATC < 41bp 0.710951150294845 0.506724367009055 NA NA prediction 0.408453566571581 Functional Loss - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140729235 chr9:140729234 synonymous SNV . 0 20 hm7G_associated_SNPs_11363 0 0 0 0 1 EHMT1 chr9:140729225 3'AG 140729225 Downstream 10bp 10745 chr20 43938268 43938268 1 + T C KIRC 43938269 + 43938249 43938289 41 CAGGTGCCTGCAGCAACAGTGTGAACAGACTGTGCGGATCC CAGGTGCCTGCAGCAACAGCGTGAACAGACTGTGCGGATCC < 41bp 0.705808884941562 0.501590059716785 NA NA prediction 0.408437650449554 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43938269 chr20:43938268 nonsynonymous SNV 0.874 1 20 hm7G_associated_SNPs_11364 0 0 0 0 2 RBPJL chr20:43938207 3'AG 43938207 Downstream 62bp 10746 chr20 43938268 43938268 1 + T C KIRC 43938269 + 43938249 43938289 41 CAGGTGCCTGCAGCAACAGTGTGAACAGACTGTGCGGATCC CAGGTGCCTGCAGCAACAGCGTGAACAGACTGTGCGGATCC < 41bp 0.705808884941562 0.501590059716785 NA NA prediction 0.408437650449554 Functional Loss - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43938269 chr20:43938268 nonsynonymous SNV 0.874 1 20 hm7G_associated_SNPs_11364 0 0 0 0 2 RBPJL chr20:43938332 5'GT 43938332 Upstream 65bp 10747 chr16 30079974 30079974 1 + A G KICH 30079975 + 30079955 30079995 41 TGACCCCAACAGGTAGACAAGGGCGTGGTCCCCCTGGCAGG TGACCCCAACAGGTAGACAGGGGCGTGGTCCCCCTGGCAGG < 41bp 0.762346776537836 0.55813021489116 NA NA prediction 0.408433123293354 Functional Loss - ALDOA ENSG00000149925 CDS Human protein_coding chr16:30079975 chr16:30079974 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_11366 0 0 1 0 2 ALDOA chr16:30079967 3'AG 30079967 Downstream 8bp 10748 chr16 30079974 30079974 1 + A G KICH 30079975 + 30079955 30079995 41 TGACCCCAACAGGTAGACAAGGGCGTGGTCCCCCTGGCAGG TGACCCCAACAGGTAGACAGGGGCGTGGTCCCCCTGGCAGG < 41bp 0.762346776537836 0.55813021489116 NA NA prediction 0.408433123293354 Functional Loss - ALDOA ENSG00000149925 CDS Human protein_coding chr16:30079975 chr16:30079974 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_11366 0 0 1 0 2 ALDOA chr16:30080021 5'GT 30080021 Upstream 48bp 10749 chr11 1973389 1973389 1 + A G SKCM 1973390 + 1973370 1973410 41 GACCTCAGGAATTACCTCGAGGGCATCTATAACGTGCCCGT GACCTCAGGAATTACCTCGGGGGCATCTATAACGTGCCCGT < 41bp 0.770951948299869 0.566741103539909 NA NA prediction 0.408421689519921 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973390 chr11:1973389 nonsynonymous SNV 0.032 3 20 hm7G_associated_SNPs_11367 0 0 1 0 2 MRPL23 chr11:1973357 3'AG 1973357 Downstream 33bp 10750 chr11 1973389 1973389 1 + A G SKCM 1973390 + 1973370 1973410 41 GACCTCAGGAATTACCTCGAGGGCATCTATAACGTGCCCGT GACCTCAGGAATTACCTCGGGGGCATCTATAACGTGCCCGT < 41bp 0.770951948299869 0.566741103539909 NA NA prediction 0.408421689519921 Functional Loss - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973390 chr11:1973389 nonsynonymous SNV 0.032 3 20 hm7G_associated_SNPs_11367 0 0 1 0 2 MRPL23 chr11:1973439 5'GT 1973439 Upstream 51bp 10751 chr2 219204528 219204528 1 + T C LIHC 219204529 + 219204509 219204549 41 CAGCCTGTACACCCGCACCTGGCTCGGGTACCTCTTCTACC CAGCCTGTACACCCGCACCCGGCTCGGGTACCTCTTCTACC < 41bp 0.735234432837216 0.531040148588295 NA NA prediction 0.408388568497843 Functional Loss - PNKD ENSG00000127838 CDS Human protein_coding chr2:219204529 chr2:219204528 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11369 0 0 0 0 2 PNKD chr2:219204506 3'AG 219204506 Downstream 23bp 10752 chr2 219204528 219204528 1 + T C LIHC 219204529 + 219204509 219204549 41 CAGCCTGTACACCCGCACCTGGCTCGGGTACCTCTTCTACC CAGCCTGTACACCCGCACCCGGCTCGGGTACCTCTTCTACC < 41bp 0.735234432837216 0.531040148588295 NA NA prediction 0.408388568497843 Functional Loss - PNKD ENSG00000127838 CDS Human protein_coding chr2:219204529 chr2:219204528 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11369 0 0 0 0 2 PNKD chr2:219204621 5'GT 219204621 Upstream 94bp 10753 chr7 148910855 148910855 1 + T C UCEC 148910856 + 148910836 148910876 41 GGAGGAGCAGCCATACCCATGGGGACCACGCGACTCAATGG GGAGGAGCAGCCATACCCACGGGGACCACGCGACTCAATGG < 41bp 0.70719323271355 0.503015312098467 NA NA prediction 0.408355841230166 Functional Loss - ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148910856 chr7:148910855 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_11371 0 0 1 0 1 ZNF282 chr7:148910906 5'GT 148910906 Upstream 52bp 10754 chr14 23079854 23079854 1 + A G UCEC 23079855 + 23079835 23079875 41 TCTGCGACTCAGTTGATTGAGCTGCTCTCTGAAGAGGAAGA TCTGCGACTCAGTTGATTGGGCTGCTCTCTGAAGAGGAAGA < 41bp 0.712181780608494 0.508004570902403 NA NA prediction 0.408354419412183 Functional Loss - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23079855 chr14:23079854 stoploss 0.616 0 20 hm7G_associated_SNPs_11372 0 0 0 0 1 ABHD4 chr14:23079765 3'AG 23079765 Downstream 90bp 10755 chr12 663142 663142 1 + A G GBM 663143 + 663123 663163 41 GAAGAAGCTCAACCAGAGGAGCCGGGGGTAAGGTAAAGGGC GAAGAAGCTCAACCAGAGGGGCCGGGGGTAAGGTAAAGGGC < 41bp 0.753629651940969 0.549455759315322 NA NA prediction 0.408347785251295 Functional Loss - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:663143 chr12:663142 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_11373 0 0 0 0 1 B4GALNT3 chr12:663149 5'GT 663149 Upstream 8bp 10756 chr16 22155616 22155616 1 + T C BLCA 22155617 + 22155597 22155637 41 GAAGCTGGAGATTTCCAGATGCATGGGTCCCAACTGCACTC GAAGCTGGAGATTTCCAGACGCATGGGTCCCAACTGCACTC < 41bp 0.734624195054823 0.530468275336017 NA NA prediction 0.408311839437611 Functional Loss - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22155617 chr16:22155616 nonsynonymous SNV 0.540 1 20 hm7G_associated_SNPs_11378 0 0 0 1 1 VWA3A chr16:22155705 5'GT 22155705 Upstream 90bp 10757 chr16 24135280 24135280 1 + T C BLCA 24135281 + 24135261 24135301 41 TTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAA TTTAACTTCCTAATGGTGCCGGGGAAAGGCAGCTTTGGCAA < 41bp 0.70915561003575 0.505008872218536 NA NA prediction 0.408293475634429 Functional Loss - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24135281 chr16:24135280 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11380 0 0 1 0 1 PRKCB chr16:24135302 5'GT 24135302 Upstream 23bp 10758 chr4 152507857 152507857 1 + A G rs554937047 152507858 + 152507838 152507878 41 AAGCTAGAAGAGAAAGGCGAGGAATGGCACTGCCTTCTGAA AAGCTAGAAGAGAAAGGCGGGGAATGGCACTGCCTTCTGAA < 41bp 0.736462487791833 0.532319446502435 NA NA prediction 0.408286082578796 Functional Loss - FAM160A1 ENSG00000164142 CDS Human protein_coding chr4:152507858 chr4:152507857 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11381 0 0 0 0 2 FAM160A1 chr4:152507793 3'AG 152507793 Downstream 65bp 10759 chr4 152507857 152507857 1 + A G rs554937047 152507858 + 152507838 152507878 41 AAGCTAGAAGAGAAAGGCGAGGAATGGCACTGCCTTCTGAA AAGCTAGAAGAGAAAGGCGGGGAATGGCACTGCCTTCTGAA < 41bp 0.736462487791833 0.532319446502435 NA NA prediction 0.408286082578796 Functional Loss - FAM160A1 ENSG00000164142 CDS Human protein_coding chr4:152507858 chr4:152507857 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11381 0 0 0 0 2 FAM160A1 chr4:152507951 5'GT 152507951 Upstream 95bp 10760 chr20 37657089 37657089 1 + T C STAD 37657090 + 37657070 37657110 41 ATCTGGTTCTGAGGTGCATTGTCTCCGGCTTCTTCGCCAAT ATCTGGTTCTGAGGTGCATCGTCTCCGGCTTCTTCGCCAAT < 41bp 0.709331372769972 0.505194464272386 NA NA prediction 0.408273816995172 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37657090 chr20:37657089 synonymous SNV . 0 20 hm7G_associated_SNPs_11382 0 0 1 0 2 DHX35 chr20:37657061 3'AG 37657061 Downstream 29bp 10761 chr20 37657089 37657089 1 + T C STAD 37657090 + 37657070 37657110 41 ATCTGGTTCTGAGGTGCATTGTCTCCGGCTTCTTCGCCAAT ATCTGGTTCTGAGGTGCATCGTCTCCGGCTTCTTCGCCAAT < 41bp 0.709331372769972 0.505194464272386 NA NA prediction 0.408273816995172 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37657090 chr20:37657089 synonymous SNV . 0 20 hm7G_associated_SNPs_11382 0 0 1 0 2 DHX35 chr20:37657142 5'GT 37657142 Upstream 54bp 10762 chr17 59485425 59485425 1 + T G LUAD 59485426 + 59485406 59485446 41 TTCTTCCAGGGAATTCCAATGCCCACTTTCGGAGGCCTCTT TTCTTCCAGGGAATTCCAAGGCCCACTTTCGGAGGCCTCTT < 41bp 0.704133593557908 0.402101098042896 NA NA prediction 0.408267187115817 Functional Loss - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59485426 chr17:59485425 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11383 0 0 1 0 1 TBX2 chr17:59485415 3'AG 59485415 Downstream 11bp 10763 chr3 197762842 197762842 1 + T C UCEC 197762843 + 197762823 197762863 41 CCTGCTCTGCCCATCATGTTGGGACTTCTGTGAGCTCTGTC CCTGCTCTGCCCATCATGTCGGGACTTCTGTGAGCTCTGTC < 41bp 0.704121779578557 0.484823137291177 NA NA prediction 0.408243559157115 Functional Loss - LMLN ENSG00000185621 CDS Human protein_coding chr3:197762843 chr3:197762842 nonsynonymous SNV 0.960 0 20 hm7G_associated_SNPs_11384 0 0 0 0 1 LMLN chr3:197762914 5'GT 197762914 Upstream 73bp 10764 chr16 28914202 28914202 1 + T C STAD 28914203 + 28914183 28914223 41 ATGGCCCTGTCCGTGCTGGTGACCATCGAGATGTGCAATGC ATGGCCCTGTCCGTGCTGGCGACCATCGAGATGTGCAATGC < 41bp 0.735764258714999 0.531643757380929 NA NA prediction 0.40824100266814 Functional Loss - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28914203 chr16:28914202 nonsynonymous SNV 0.986 5 20 hm7G_associated_SNPs_11385 0 0 1 0 1 ATP2A1 chr16:28914232 5'GT 28914232 Upstream 31bp 10765 chr4 99982392 99982392 1 + T G LUSC 99982393 + 99982373 99982413 41 CAGTTTGAGCACACCCTCCTGGTCACAGACACTGGCTGTGA CAGTTTGAGCACACCCTCCGGGTCACAGACACTGGCTGTGA < 41bp 0.901763257401565 0.697644125757878 NA NA prediction 0.408238263287375 Functional Loss - METAP1 ENSG00000164024 CDS Human protein_coding chr4:99982393 chr4:99982392 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_11386 0 0 1 2 1 METAP1 chr4:99982305 3'AG 99982305 Downstream 88bp 10766 chrX 106096816 106096816 1 + T C UCEC 106096817 + 106096797 106096837 41 GTTCAGCAAGGTTCAAATGTGAGTGATGAAAAAACCAGTCA GTTCAGCAAGGTTCAAATGCGAGTGATGAAAAAACCAGTCA < 41bp 0.713987458700527 0.509877441847134 NA NA prediction 0.408220033706785 Functional Loss - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106096817 chrX:106096816 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_11388 0 0 0 0 2 TBC1D8B chrX:106096751 3'AG 106096751 Downstream 66bp 10767 chrX 106096816 106096816 1 + T C UCEC 106096817 + 106096797 106096837 41 GTTCAGCAAGGTTCAAATGTGAGTGATGAAAAAACCAGTCA GTTCAGCAAGGTTCAAATGCGAGTGATGAAAAAACCAGTCA < 41bp 0.713987458700527 0.509877441847134 NA NA prediction 0.408220033706785 Functional Loss - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106096817 chrX:106096816 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_11388 0 0 0 0 2 TBC1D8B chrX:106096880 5'GT 106096880 Upstream 65bp 10768 chr19 51769043 51769043 1 + T C LUAD 51769044 + 51769024 51769064 41 CTTCCAGGAAAGAGTTCTTTGGCTGCCCAGGCCTTCGTGAA CTTCCAGGAAAGAGTTCTTCGGCTGCCCAGGCCTTCGTGAA < 41bp 0.704878667130076 0.500783321586578 NA NA prediction 0.408190691086996 Functional Loss - SIGLECL1 ENSG00000179213 CDS Human protein_coding chr19:51769044 chr19:51769043 nonsynonymous SNV 0.011 3 20 hm7G_associated_SNPs_11391 0 0 0 0 2 SIGLECL1 chr19:51769031 3'AG 51769031 Downstream 13bp 10769 chr19 51769043 51769043 1 + T C LUAD 51769044 + 51769024 51769064 41 CTTCCAGGAAAGAGTTCTTTGGCTGCCCAGGCCTTCGTGAA CTTCCAGGAAAGAGTTCTTCGGCTGCCCAGGCCTTCGTGAA < 41bp 0.704878667130076 0.500783321586578 NA NA prediction 0.408190691086996 Functional Loss - SIGLECL1 ENSG00000179213 CDS Human protein_coding chr19:51769044 chr19:51769043 nonsynonymous SNV 0.011 3 20 hm7G_associated_SNPs_11391 0 0 0 0 2 SIGLECL1 chr19:51769136 5'GT 51769136 Upstream 94bp 10770 chr16 70500150 70500150 1 + T C UCEC 70500151 + 70500131 70500171 41 GACTGCCTGCTGGACATCATGACCTATCGGGTGAGGCTGGG GACTGCCTGCTGGACATCACGACCTATCGGGTGAGGCTGGG < 41bp 0.726151254398406 0.522057636328729 NA NA prediction 0.408187236139355 Functional Loss - FUK ENSG00000157353 CDS Human protein_coding chr16:70500151 chr16:70500150 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_11392 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 11bp 10771 chr17 39978552 39978552 1 + A G ESCA 39978553 + 39978533 39978573 41 AGGACCCTGAGAAAACCATAGGAGACATGTTCCAGAACCAG AGGACCCTGAGAAAACCATGGGAGACATGTTCCAGAACCAG < 41bp 0.723959128761345 0.519906318948358 NA NA prediction 0.408105619625974 Functional Loss - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978553 chr17:39978552 nonsynonymous SNV 0.942 4 20 hm7G_associated_SNPs_11393 0 0 1 0 1 FKBP10 chr17:39978475 3'AG 39978475 Downstream 78bp 10772 chr12 56482373 56482373 1 + T C SARC 56482374 + 56482354 56482394 41 GTGTCAGGGCCTGTCCTCCTGACAAGATGGAAGTAGATAAA GTGTCAGGGCCTGTCCTCCCGACAAGATGGAAGTAGATAAA < 41bp 0.74420318692088 0.54015896481003 NA NA prediction 0.4080884442217 Functional Loss - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56482374 chr12:56482373 synonymous SNV . 0 20 hm7G_associated_SNPs_11394 0 0 1 0 1 ERBB3 chr12:56482440 5'GT 56482440 Upstream 68bp 10773 chr5 79355669 79355669 1 + T C LGG 79355670 + 79355650 79355690 41 CAGTAGAGATGGCTTCCAGTGTGGGCCCTGCCCCGAGGGCT CAGTAGAGATGGCTTCCAGCGTGGGCCCTGCCCCGAGGGCT < 41bp 0.733078867457755 0.529035623707415 NA NA prediction 0.40808648750068 Functional Loss - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79355670 chr5:79355669 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11395 0 0 0 0 1 THBS4 chr5:79355728 5'GT 79355728 Upstream 60bp 10774 chr1 32622991 32622991 1 + T C UCEC 32622992 + 32622972 32623012 41 TGGAGATGCTCTTTTCTGATGATTCTGACCTGCAGTTAGCA TGGAGATGCTCTTTTCTGACGATTCTGACCTGCAGTTAGCA < 41bp 0.750917300807484 0.546882695580198 NA NA prediction 0.408069210454572 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32622992 chr1:32622991 synonymous SNV . 0 20 hm7G_associated_SNPs_11396 0 0 1 0 2 KPNA6 chr1:32622947 3'AG 32622947 Downstream 45bp 10775 chr1 32622991 32622991 1 + T C UCEC 32622992 + 32622972 32623012 41 TGGAGATGCTCTTTTCTGATGATTCTGACCTGCAGTTAGCA TGGAGATGCTCTTTTCTGACGATTCTGACCTGCAGTTAGCA < 41bp 0.750917300807484 0.546882695580198 NA NA prediction 0.408069210454572 Functional Loss - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32622992 chr1:32622991 synonymous SNV . 0 20 hm7G_associated_SNPs_11396 0 0 1 0 2 KPNA6 chr1:32623046 5'GT 32623046 Upstream 56bp 10776 chr1 180775239 180775239 1 + T C UCEC 180775240 + 180775220 180775260 41 GAAAAATCCTGAAAAAGCATGACAAGATCCTGGAAACATCT GAAAAATCCTGAAAAAGCACGACAAGATCCTGGAAACATCT < 41bp 0.710676938793559 0.506655185321228 NA NA prediction 0.408043506944663 Functional Loss - XPR1 ENSG00000143324 CDS Human protein_coding chr1:180775240 chr1:180775239 synonymous SNV . 0 20 hm7G_associated_SNPs_11399 0 0 0 0 1 XPR1 chr1:180775198 3'AG 180775198 Downstream 42bp 10777 chr1 158813851 158813851 1 + T G PAAD 158813852 + 158813832 158813872 41 GCCAGCACATCTGCAGCTGTGGATCATCCCCCACTACCCCA GCCAGCACATCTGCAGCTGGGGATCATCCCCCACTACCCCA < 41bp 0.704014121846875 0.362023279973599 NA NA prediction 0.408028243693749 Functional Loss - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813852 chr1:158813851 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_11401 0 0 0 0 1 MNDA chr1:158813912 5'GT 158813912 Upstream 62bp 10778 chr17 16338251 16338251 1 + T C UCEC 16338252 + 16338232 16338272 41 GAGCAGACGCTGCCTACGCTGTGTGAGGACCCGTCAGGGGC GAGCAGACGCTGCCTACGCCGTGTGAGGACCCGTCAGGGGC < 41bp 0.704013611177136 0.492838435905812 NA NA prediction 0.408027222354271 Functional Loss - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16338252 chr17:16338251 nonsynonymous SNV 0.375 1 20 hm7G_associated_SNPs_11402 0 0 0 0 1 TRPV2 chr17:16338283 5'GT 16338283 Upstream 33bp 10779 chr4 100761566 100761566 1 + T G OV 100761567 + 100761547 100761587 41 TTGCAAATCAGCCTTTGATTGGAAGCGAGACAGGTAAGCTA TTGCAAATCAGCCTTTGATGGGAAGCGAGACAGGTAAGCTA < 41bp 0.903255476641766 0.699241894842874 NA NA prediction 0.408027163597783 Functional Loss - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100761567 chr4:100761566 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11403 0 0 0 0 1 DAPP1 chr4:100761579 5'GT 100761579 Upstream 14bp 10780 chr10 94733850 94733850 1 + T C LIHC 94733851 + 94733831 94733871 41 GGAGAAATATATACCAAACTGAATCAAAAAATTGATGAATT GGAGAAATATATACCAAACCGAATCAAAAAATTGATGAATT < 41bp 0.704012057259337 0.499267309817472 NA NA prediction 0.408024114518674 Functional Loss - EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94733851 chr10:94733850 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_11404 0 0 1 1 1 EXOC6 chr10:94733810 3'AG 94733810 Downstream 41bp 10781 chr14 97326940 97326940 1 + T C UCEC 97326941 + 97326921 97326961 41 TGAAATTACTAGACTACACTGAAAAACCTCTTTATGAAAAT TGAAATTACTAGACTACACCGAAAAACCTCTTTATGAAAAT < 41bp 0.707222802665121 0.503223748123779 NA NA prediction 0.407998109082684 Functional Loss - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97326941 chr14:97326940 synonymous SNV . 0 20 hm7G_associated_SNPs_11405 0 0 1 0 1 VRK1 chr14:97326894 3'AG 97326894 Downstream 47bp 10782 chr20 3027057 3027057 1 + A G LGG 3027058 + 3027038 3027078 41 GTGCAGAGGAAGGTGCACGAGGCCCGAGCCGGGGTTCTGGC GTGCAGAGGAAGGTGCACGGGGCCCGAGCCGGGGTTCTGGC < 41bp 0.78876621338375 0.584767335620396 NA NA prediction 0.407997755526708 Functional Loss - MRPS26 ENSG00000125901 CDS Human protein_coding chr20:3027058 chr20:3027057 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_11406 0 0 1 0 1 MRPS26 chr20:3027019 3'AG 3027019 Downstream 39bp 10783 chr18 74607233 74607233 1 + T C UCEC 74607234 + 74607214 74607254 41 CTCAAGGTGCACATTCGCCTGCACACAGGTATGGCCTCAGG CTCAAGGTGCACATTCGCCCGCACACAGGTATGGCCTCAGG < 41bp 0.703993937230669 0.497545455836993 NA NA prediction 0.407987874461339 Functional Loss - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74607234 chr18:74607233 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_11407 0 0 1 0 1 ZNF236 chr18:74607241 5'GT 74607241 Upstream 9bp 10784 chr10 89653806 89653806 1 + T C UCEC 89653807 + 89653787 89653827 41 TATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACT TATCCAAACATTATTGCTACGGGATTTCCTGCAGAAAGACT < 41bp 0.720085151772954 0.516095711764581 NA NA prediction 0.407978880016747 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89653807 chr10:89653806 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11409 1 0 1 0 2 PTEN chr10:89653782 3'AG 89653782 Downstream 25bp 10785 chr10 89653806 89653806 1 + T C UCEC 89653807 + 89653787 89653827 41 TATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACT TATCCAAACATTATTGCTACGGGATTTCCTGCAGAAAGACT < 41bp 0.720085151772954 0.516095711764581 NA NA prediction 0.407978880016747 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89653807 chr10:89653806 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11409 1 0 1 0 2 PTEN chr10:89653866 5'GT 89653866 Upstream 61bp 10786 chr19 1053403 1053403 1 + T C SKCM 1053404 + 1053384 1053424 41 GAGGAGCTGCCACACGAGCTGGTGCTGGTGCTGCCCTACAC GAGGAGCTGCCACACGAGCCGGTGCTGGTGCTGCCCTACAC < 41bp 0.743652099629491 0.539663949722361 NA NA prediction 0.407976299814259 Functional Loss - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1053404 chr19:1053403 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_11410 0 0 1 0 1 ABCA7 chr19:1053328 3'AG 1053328 Downstream 76bp 10787 chr22 32482294 32482294 1 + T C KIRC 32482295 + 32482275 32482315 41 ATCGCCTATCCAACCTTAGTGGTGGAGCTCATGCCCAATGG ATCGCCTATCCAACCTTAGCGGTGGAGCTCATGCCCAATGG < 41bp 0.730799833240094 0.526814193838281 NA NA prediction 0.407971278803626 Functional Loss - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32482295 chr22:32482294 nonsynonymous SNV 0.625 3 20 hm7G_associated_SNPs_11411 0 0 0 0 2 SLC5A1 chr22:32482207 3'AG 32482207 Downstream 88bp 10788 chr22 32482294 32482294 1 + T C KIRC 32482295 + 32482275 32482315 41 ATCGCCTATCCAACCTTAGTGGTGGAGCTCATGCCCAATGG ATCGCCTATCCAACCTTAGCGGTGGAGCTCATGCCCAATGG < 41bp 0.730799833240094 0.526814193838281 NA NA prediction 0.407971278803626 Functional Loss - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32482295 chr22:32482294 nonsynonymous SNV 0.625 3 20 hm7G_associated_SNPs_11411 0 0 0 0 2 SLC5A1 chr22:32482314 5'GT 32482314 Upstream 21bp 10789 chr19 16899862 16899862 1 + T C UCEC 16899863 + 16899843 16899883 41 GCTTCAAAGGATTACACGCTGCACTTGTGGAACTTACTCTC GCTTCAAAGGATTACACGCCGCACTTGTGGAACTTACTCTC < 41bp 0.703973015404277 0.488808932849588 NA NA prediction 0.407946030808553 Functional Loss - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16899863 chr19:16899862 nonsynonymous SNV 0.008 4 20 hm7G_associated_SNPs_11412 0 0 0 0 1 NWD1 chr19:16899793 3'AG 16899793 Downstream 70bp 10790 chr11 111487007 111487007 1 + T C UCEC 111487008 + 111486988 111487028 41 AAGTCTCAGCTGGATGCAGTGAACCTTGAGAAAATCTACCG AAGTCTCAGCTGGATGCAGCGAACCTTGAGAAAATCTACCG < 41bp 0.739032425663726 0.535086128527005 NA NA prediction 0.407892594273442 Functional Loss - SIK2 ENSG00000170145 CDS Human protein_coding chr11:111487008 chr11:111487007 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11416 0 0 1 0 2 SIK2 chr11:111486967 3'AG 111486967 Downstream 41bp 10791 chr11 111487007 111487007 1 + T C UCEC 111487008 + 111486988 111487028 41 AAGTCTCAGCTGGATGCAGTGAACCTTGAGAAAATCTACCG AAGTCTCAGCTGGATGCAGCGAACCTTGAGAAAATCTACCG < 41bp 0.739032425663726 0.535086128527005 NA NA prediction 0.407892594273442 Functional Loss - SIK2 ENSG00000170145 CDS Human protein_coding chr11:111487008 chr11:111487007 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11416 0 0 1 0 2 SIK2 chr11:111487083 5'GT 111487083 Upstream 77bp 10792 chr2 74902071 74902071 1 + T C rs71418744 74902072 + 74902052 74902092 41 CCACAAGACATTCGGACAGTGCTGAATGGTCCCTTCAGAGA CCACAAGACATTCGGACAGCGCTGAATGGTCCCTTCAGAGA < 41bp 0.713021698089201 0.509077397855773 NA NA prediction 0.407888600466858 Functional Loss - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74902072 chr2:74902071 nonsynonymous SNV 0.707 0 20 hm7G_associated_SNPs_11417 0 0 1 0 1 SEMA4F chr2:74902015 3'AG 74902015 Downstream 57bp 10793 chr3 111394156 111394156 1 + A G UCEC 111394157 + 111394137 111394177 41 CATCTGCTCCCCCAACCCCAGCGGGACAAAGACATCATCGG CATCTGCTCCCCCAACCCCGGCGGGACAAAGACATCATCGG < 41bp 0.706812208201999 0.502882816214808 NA NA prediction 0.407858783974382 Functional Loss - PLCXD2 ENSG00000240891 CDS Human protein_coding chr3:111394157 chr3:111394156 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_11420 0 0 1 0 1 PLCXD2 chr3:111394255 5'GT 111394255 Upstream 100bp 10794 chr1 29606642 29606642 1 + T C COAD 29606643 + 29606623 29606663 41 GGCCGGCACAGGGCCGCGGTGCGCCCATCAGGTGGGAAAGC GGCCGGCACAGGGCCGCGGCGCGCCCATCAGGTGGGAAAGC < 41bp 0.70392255989361 0.493833441732881 NA NA prediction 0.407845119787221 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29606643 chr1:29606642 synonymous SNV . 0 20 hm7G_associated_SNPs_11421 0 0 1 0 2 PTPRU chr1:29606551 3'AG 29606551 Downstream 92bp 10795 chr1 29606642 29606642 1 + T C COAD 29606643 + 29606623 29606663 41 GGCCGGCACAGGGCCGCGGTGCGCCCATCAGGTGGGAAAGC GGCCGGCACAGGGCCGCGGCGCGCCCATCAGGTGGGAAAGC < 41bp 0.70392255989361 0.493833441732881 NA NA prediction 0.407845119787221 Functional Loss - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29606643 chr1:29606642 synonymous SNV . 0 20 hm7G_associated_SNPs_11421 0 0 1 0 2 PTPRU chr1:29606653 5'GT 29606653 Upstream 12bp 10796 chr15 74919778 74919778 1 + T C rs56042870 74919779 + 74919759 74919799 41 AGTTTGAAACCCTCTACAATGAGCACAAGGTATTGGTGGGG AGTTTGAAACCCTCTACAACGAGCACAAGGTATTGGTGGGG < 41bp 0.713413430319834 0.509493733725002 NA NA prediction 0.407839393189664 Functional Loss - CLK3 ENSG00000179335 CDS Human protein_coding chr15:74919779 chr15:74919778 synonymous SNV . 0 20 hm7G_associated_SNPs_11422 0 0 1 0 2 CLK3 chr15:74919693 3'AG 74919693 Downstream 86bp 10797 chr15 74919778 74919778 1 + T C rs56042870 74919779 + 74919759 74919799 41 AGTTTGAAACCCTCTACAATGAGCACAAGGTATTGGTGGGG AGTTTGAAACCCTCTACAACGAGCACAAGGTATTGGTGGGG < 41bp 0.713413430319834 0.509493733725002 NA NA prediction 0.407839393189664 Functional Loss - CLK3 ENSG00000179335 CDS Human protein_coding chr15:74919779 chr15:74919778 synonymous SNV . 0 20 hm7G_associated_SNPs_11422 0 0 1 0 2 CLK3 chr15:74919787 5'GT 74919787 Upstream 10bp 10798 chr7 111936011 111936011 1 + T C LUSC 111936012 + 111935992 111936032 41 TTAATTCCACTGCTCCATTTGGTAAGTGTACATCTTGGCTA TTAATTCCACTGCTCCATTCGGTAAGTGTACATCTTGGCTA < 41bp 0.70825567824703 0.504340124831397 NA NA prediction 0.407831106831266 Functional Loss - ZNF277 ENSG00000198839 CDS Human protein_coding chr7:111936012 chr7:111936011 synonymous SNV . 0 20 hm7G_associated_SNPs_11423 0 0 1 0 2 ZNF277 chr7:111935924 3'AG 111935924 Downstream 88bp 10799 chr7 111936011 111936011 1 + T C LUSC 111936012 + 111935992 111936032 41 TTAATTCCACTGCTCCATTTGGTAAGTGTACATCTTGGCTA TTAATTCCACTGCTCCATTCGGTAAGTGTACATCTTGGCTA < 41bp 0.70825567824703 0.504340124831397 NA NA prediction 0.407831106831266 Functional Loss - ZNF277 ENSG00000198839 CDS Human protein_coding chr7:111936012 chr7:111936011 synonymous SNV . 0 20 hm7G_associated_SNPs_11423 0 0 1 0 2 ZNF277 chr7:111936012 5'GT 111936012 Upstream 2bp 10800 chr18 8720430 8720430 1 + A G HNSC 8720431 + 8720411 8720451 41 GAAAACGAAACTCTCCGACAGCAGATGATTGAAGTGGAAAT GAAAACGAAACTCTCCGACGGCAGATGATTGAAGTGGAAAT < 41bp 0.704623546798623 0.50071300283603 NA NA prediction 0.407821087925187 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8720431 chr18:8720430 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_11425 0 0 1 0 2 MTCL1 chr18:8720336 3'AG 8720336 Downstream 95bp 10801 chr18 8720430 8720430 1 + A G HNSC 8720431 + 8720411 8720451 41 GAAAACGAAACTCTCCGACAGCAGATGATTGAAGTGGAAAT GAAAACGAAACTCTCCGACGGCAGATGATTGAAGTGGAAAT < 41bp 0.704623546798623 0.50071300283603 NA NA prediction 0.407821087925187 Functional Loss - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8720431 chr18:8720430 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_11425 0 0 1 0 2 MTCL1 chr18:8720494 5'GT 8720494 Upstream 65bp 10802 chr1 32672689 32672689 1 + T C LUAD 32672690 + 32672670 32672710 41 CTTGGCCATGGAATTGCTGTGGCTGCAACAGGCCATCAATA CTTGGCCATGGAATTGCTGCGGCTGCAACAGGCCATCAATA < 41bp 0.716338199790261 0.512434062657415 NA NA prediction 0.407808274265691 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32672690 chr1:32672689 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_11427 0 0 0 0 2 IQCC chr1:32672603 3'AG 32672603 Downstream 87bp 10803 chr1 32672689 32672689 1 + T C LUAD 32672690 + 32672670 32672710 41 CTTGGCCATGGAATTGCTGTGGCTGCAACAGGCCATCAATA CTTGGCCATGGAATTGCTGCGGCTGCAACAGGCCATCAATA < 41bp 0.716338199790261 0.512434062657415 NA NA prediction 0.407808274265691 Functional Loss - IQCC ENSG00000160051 CDS Human protein_coding chr1:32672690 chr1:32672689 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_11427 0 0 0 0 2 IQCC chr1:32672721 5'GT 32672721 Upstream 33bp 10804 chr20 61945131 61945131 1 + T C COAD 61945132 + 61945112 61945152 41 CCACCCTCCAACCTGGCCCTGGCCTCGGAGACCCCCGACAG CCACCCTCCAACCTGGCCCCGGCCTCGGAGACCCCCGACAG < 41bp 0.706503239956109 0.502614114747344 NA NA prediction 0.40777825041753 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61945132 chr20:61945131 nonsynonymous SNV 0.748 3 20 hm7G_associated_SNPs_11428 0 0 0 0 1 COL20A1 chr20:61945095 3'AG 61945095 Downstream 37bp 10805 chr17 28407223 28407223 1 + T C rs200371847 28407224 + 28407204 28407244 41 GATGATGCTCAATTTGTACTGAACAGAGTGCTCTACAGGGA GATGATGCTCAATTTGTACCGAACAGAGTGCTCTACAGGGA < 41bp 0.727077214315839 0.523189215842254 NA NA prediction 0.40777599694717 Functional Loss - EFCAB5 ENSG00000176927 CDS Human protein_coding chr17:28407224 chr17:28407223 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_11429 0 0 0 0 1 EFCAB5 chr17:28407259 5'GT 28407259 Upstream 37bp 10806 chr14 77236322 77236322 1 + T G STAD 77236323 + 77236303 77236343 41 CAGATCCCCATACCGAGTGTGCCTACGTTCCAGCCGTCTAC CAGATCCCCATACCGAGTGGGCCTACGTTCCAGCCGTCTAC < 41bp 0.70388560645233 0.348265655329666 NA NA prediction 0.407771212904661 Functional Loss - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77236323 chr14:77236322 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11430 0 0 1 0 2 VASH1 chr14:77236306 3'AG 77236306 Downstream 17bp 10807 chr14 77236322 77236322 1 + T G STAD 77236323 + 77236303 77236343 41 CAGATCCCCATACCGAGTGTGCCTACGTTCCAGCCGTCTAC CAGATCCCCATACCGAGTGGGCCTACGTTCCAGCCGTCTAC < 41bp 0.70388560645233 0.348265655329666 NA NA prediction 0.407771212904661 Functional Loss - VASH1 ENSG00000071246 CDS Human protein_coding chr14:77236323 chr14:77236322 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11430 0 0 1 0 2 VASH1 chr14:77236394 5'GT 77236394 Upstream 73bp 10808 chr1 44133489 44133489 1 + T C COAD 44133490 + 44133470 44133510 41 ATCTCCATGGATGTGTTTGTGAGAAAGTTCCAGCCAGAAAG ATCTCCATGGATGTGTTTGCGAGAAAGTTCCAGCCAGAAAG < 41bp 0.703885421498064 0.489434903872569 NA NA prediction 0.407770842996129 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44133490 chr1:44133489 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11431 0 0 1 0 1 KDM4A chr1:44133443 3'AG 44133443 Downstream 47bp 10809 chr2 11943080 11943080 1 + A G UCEC 11943081 + 11943061 11943101 41 GAGGAGCGCGCAGCTGCCAAGCCATCAAACGCAGGCCACCT GAGGAGCGCGCAGCTGCCAGGCCATCAAACGCAGGCCACCT < 41bp 0.703882895247966 0.488189763625219 NA NA prediction 0.407765790495932 Functional Loss - LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11943081 chr2:11943080 nonsynonymous SNV 0.507 0 20 hm7G_associated_SNPs_11432 0 0 1 0 1 LPIN1 chr2:11943159 5'GT 11943159 Upstream 80bp 10810 chrX 86919796 86919796 1 + T C UCEC 86919797 + 86919777 86919817 41 GGTGATTCATGGTCAACTGTGGCACCTCTGAGTGTTCCTCG GGTGATTCATGGTCAACTGCGGCACCTCTGAGTGTTCCTCG < 41bp 0.720826545306299 0.516944486494855 NA NA prediction 0.407764117622887 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86919797 chrX:86919796 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11433 0 0 0 0 1 KLHL4 chrX:86919764 3'AG 86919764 Downstream 33bp 10811 chr1 36358858 36358858 1 + T C LUAD 36358859 + 36358839 36358879 41 CAAGCCCTGGATGTGGCCATGAGGCACCTGGCATCCATGAG CAAGCCCTGGATGTGGCCACGAGGCACCTGGCATCCATGAG < 41bp 0.754315305421581 0.550437739084918 NA NA prediction 0.407755132673327 Functional Loss - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36358859 chr1:36358858 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11434 0 0 1 0 1 AGO1 chr1:36358879 5'GT 36358879 Upstream 22bp 10812 chr10 89692917 89692917 1 + T C UCEC 89692918 + 89692898 89692938 41 AAGGGACGAACTGGTGTAATGATATGTGCATATTTATTACA AAGGGACGAACTGGTGTAACGATATGTGCATATTTATTACA < 41bp 0.714574753215583 0.510710736612072 NA NA prediction 0.407728033207021 Functional Loss - PTEN ENSG00000171862 CDS Human protein_coding chr10:89692918 chr10:89692917 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11437 2 0 1 0 1 PTEN chr10:89693008 5'GT 89693008 Upstream 92bp 10813 chr11 129724706 129724706 1 + T C rs138647261 129724707 + 129724687 129724727 41 ATGGCTGTGGCAGTATTCATGGAAGGTAATTTTGTGGAACG ATGGCTGTGGCAGTATTCACGGAAGGTAATTTTGTGGAACG < 41bp 0.70822534219363 0.504371199059732 NA NA prediction 0.407708286267796 Functional Loss - TMEM45B ENSG00000151715 CDS Human protein_coding chr11:129724707 chr11:129724706 nonsynonymous SNV 0.444 0 20 hm7G_associated_SNPs_11442 0 0 1 0 1 TMEM45B chr11:129724711 5'GT 129724711 Upstream 6bp 10814 chr3 69990454 69990454 1 + T C LUAD 69990455 + 69990435 69990475 41 GAGGAAATCTTGGGCTTGATGGATCCTGCTTTGCAAATGGC GAGGAAATCTTGGGCTTGACGGATCCTGCTTTGCAAATGGC < 41bp 0.736599314222529 0.532749100394157 NA NA prediction 0.407700427656744 Functional Loss - MITF ENSG00000187098 CDS Human protein_coding chr3:69990455 chr3:69990454 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11443 0 0 1 0 2 MITF chr3:69990387 3'AG 69990387 Downstream 68bp 10815 chr3 69990454 69990454 1 + T C LUAD 69990455 + 69990435 69990475 41 GAGGAAATCTTGGGCTTGATGGATCCTGCTTTGCAAATGGC GAGGAAATCTTGGGCTTGACGGATCCTGCTTTGCAAATGGC < 41bp 0.736599314222529 0.532749100394157 NA NA prediction 0.407700427656744 Functional Loss - MITF ENSG00000187098 CDS Human protein_coding chr3:69990455 chr3:69990454 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11443 0 0 1 0 2 MITF chr3:69990482 5'GT 69990482 Upstream 29bp 10816 chr1 179054832 179054832 1 + T C UCEC 179054833 + 179054813 179054853 41 CAGCTGGTCCTAAGAACAGTGAGGGGCTACTTAGAGACGCC CAGCTGGTCCTAAGAACAGCGAGGGGCTACTTAGAGACGCC < 41bp 0.744104623027405 0.540263999581094 NA NA prediction 0.407681246892622 Functional Loss - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179054833 chr1:179054832 nonsynonymous SNV 0.640 4 20 hm7G_associated_SNPs_11444 0 0 0 0 1 TOR3A chr1:179054763 3'AG 179054763 Downstream 70bp 10817 chr3 138116230 138116230 1 + T C SKCM 138116231 + 138116211 138116251 41 AATACATGCGCACGGGGGATGGCTTCCTCATCGTCTACTCC AATACATGCGCACGGGGGACGGCTTCCTCATCGTCTACTCC < 41bp 0.745508043757675 0.541681147730701 NA NA prediction 0.407653792053949 Functional Loss - MRAS ENSG00000158186 CDS Human protein_coding chr3:138116231 chr3:138116230 synonymous SNV . 0 20 hm7G_associated_SNPs_11446 0 0 0 0 2 MRAS chr3:138116166 3'AG 138116166 Downstream 65bp 10818 chr3 138116230 138116230 1 + T C SKCM 138116231 + 138116211 138116251 41 AATACATGCGCACGGGGGATGGCTTCCTCATCGTCTACTCC AATACATGCGCACGGGGGACGGCTTCCTCATCGTCTACTCC < 41bp 0.745508043757675 0.541681147730701 NA NA prediction 0.407653792053949 Functional Loss - MRAS ENSG00000158186 CDS Human protein_coding chr3:138116231 chr3:138116230 synonymous SNV . 0 20 hm7G_associated_SNPs_11446 0 0 0 0 2 MRAS chr3:138116319 5'GT 138116319 Upstream 90bp 10819 chr16 71419532 71419532 1 + T G SKCM 71419533 + 71419513 71419553 41 GATGCCCTTTTGAAGGATCTGTACGAGAAAAACAAAAAGGT GATGCCCTTTTGAAGGATCGGTACGAGAAAAACAAAAAGGT < 41bp 0.900961401745571 0.697137284656519 NA NA prediction 0.407648234178103 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71419533 chr16:71419532 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11447 0 0 0 2 2 CALB2 chr16:71419480 3'AG 71419480 Downstream 53bp 10820 chr16 71419532 71419532 1 + T G SKCM 71419533 + 71419513 71419553 41 GATGCCCTTTTGAAGGATCTGTACGAGAAAAACAAAAAGGT GATGCCCTTTTGAAGGATCGGTACGAGAAAAACAAAAAGGT < 41bp 0.900961401745571 0.697137284656519 NA NA prediction 0.407648234178103 Functional Loss - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71419533 chr16:71419532 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11447 0 0 0 2 2 CALB2 chr16:71419551 5'GT 71419551 Upstream 20bp 10821 chr16 68380178 68380178 1 + A G UCEC 68380179 + 68380159 68380199 41 TCGATACGTCCAGGCTCTGAGGACCGTAAGTGTCCAGCCCC TCGATACGTCCAGGCTCTGGGGACCGTAAGTGTCCAGCCCC < 41bp 0.728905440085943 0.525086301087686 NA NA prediction 0.407638277996514 Functional Loss - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68380179 chr16:68380178 nonsynonymous SNV 0.953 0 20 hm7G_associated_SNPs_11448 0 0 1 0 1 PRMT7 chr16:68380183 5'GT 68380183 Upstream 6bp 10822 chr11 592566 592566 1 + T C COAD 592567 + 592547 592587 41 ATTCTGTCCTAGATCCCAGTGGAGAACACCAAAGCGAGCGA ATTCTGTCCTAGATCCCAGCGGAGAACACCAAAGCGAGCGA < 41bp 0.742998270746211 0.539180719880753 NA NA prediction 0.407635101730917 Functional Loss - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:592567 chr11:592566 nonsynonymous SNV 0.500 2 20 hm7G_associated_SNPs_11451 0 0 1 0 1 PHRF1 chr11:592559 3'AG 592559 Downstream 8bp 10823 chr3 10979960 10979960 1 + A G STAD 10979961 + 10979941 10979981 41 CCAGAAGTTGACGACCCCCAGCACAGATCTGAAAATGCGGG CCAGAAGTTGACGACCCCCGGCACAGATCTGAAAATGCGGG < 41bp 0.726787146820501 0.522986898811069 NA NA prediction 0.407600496018866 Functional Loss - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10979961 chr3:10979960 nonsynonymous SNV 0.563 1 20 hm7G_associated_SNPs_11452 0 0 0 0 1 SLC6A11 chr3:10979936 3'AG 10979936 Downstream 25bp 10824 chr15 45965905 45965905 1 + A G LIHC 45965906 + 45965886 45965926 41 GCTCTGCAGGACTTCAAAGAGGGCAATGCCATCTTCACCTT GCTCTGCAGGACTTCAAAGGGGGCAATGCCATCTTCACCTT < 41bp 0.733376163296273 0.529578022813291 NA NA prediction 0.407596280965965 Functional Loss - SQOR ENSG00000137767;ENSG00000260170 CDS Human other chr15:45965906 chr15:45965905 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_11453 0 0 0 0 1 SQOR chr15:45965999 5'GT 45965999 Upstream 95bp 10825 chr11 64060603 64060603 1 + A G LIHC 64060604 + 64060584 64060624 41 GAGCAGCAGGCCCAGAGGGAGCTGGGGGAGGTCCGAGAGAA GAGCAGCAGGCCCAGAGGGGGCTGGGGGAGGTCCGAGAGAA < 41bp 0.781080045450165 0.577290003296212 NA NA prediction 0.407580084307905 Functional Loss - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64060604 chr11:64060603 nonsynonymous SNV 0.985 0 20 hm7G_associated_SNPs_11458 0 0 0 0 1 KCNK4 chr11:64060679 5'GT 64060679 Upstream 77bp 10826 chr3 108393010 108393010 1 + T G LUSC 108393011 + 108392991 108393031 41 CTCAATCAGCTTGCCAGGGTGACTCACATGGCAGCAAGGTA CTCAATCAGCTTGCCAGGGGGACTCACATGGCAGCAAGGTA < 41bp 0.70378635232629 0.369007417074644 NA NA prediction 0.407572704652579 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108393011 chr3:108393010 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11459 0 0 0 0 2 DZIP3 chr3:108392925 3'AG 108392925 Downstream 86bp 10827 chr3 108393010 108393010 1 + T G LUSC 108393011 + 108392991 108393031 41 CTCAATCAGCTTGCCAGGGTGACTCACATGGCAGCAAGGTA CTCAATCAGCTTGCCAGGGGGACTCACATGGCAGCAAGGTA < 41bp 0.70378635232629 0.369007417074644 NA NA prediction 0.407572704652579 Functional Loss - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108393011 chr3:108393010 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11459 0 0 0 0 2 DZIP3 chr3:108393028 5'GT 108393028 Upstream 19bp 10828 chr17 33496901 33496901 1 + A G STAD 33496902 + 33496882 33496922 41 TGGCACAGACTACGGTCTCAGGCAGTTTGCGGAAGGGTCGA TGGCACAGACTACGGTCTCGGGCAGTTTGCGGAAGGGTCGA < 41bp 0.703782660324369 0.492746243953954 NA NA prediction 0.407565320648738 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496902 chr17:33496901 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11460 0 0 0 0 2 UNC45B chr17:33496856 3'AG 33496856 Downstream 46bp 10829 chr17 33496901 33496901 1 + A G STAD 33496902 + 33496882 33496922 41 TGGCACAGACTACGGTCTCAGGCAGTTTGCGGAAGGGTCGA TGGCACAGACTACGGTCTCGGGCAGTTTGCGGAAGGGTCGA < 41bp 0.703782660324369 0.492746243953954 NA NA prediction 0.407565320648738 Functional Loss - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496902 chr17:33496901 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11460 0 0 0 0 2 UNC45B chr17:33496950 5'GT 33496950 Upstream 50bp 10830 chr4 1725288 1725288 1 + A G LIHC 1725289 + 1725269 1725309 41 AAAGAAAATGTGCCACCCAAGAACCTGGCCAAAGCTATGAA AAAGAAAATGTGCCACCCAGGAACCTGGCCAAAGCTATGAA < 41bp 0.711934412871738 0.508151924768162 NA NA prediction 0.40756497620715 Functional Loss - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1725289 chr4:1725288 nonsynonymous SNV 0.860 2 20 hm7G_associated_SNPs_11461 0 0 1 0 1 TACC3 chr4:1725310 5'GT 1725310 Upstream 23bp 10831 chr5 112328405 112328405 1 + T C UCEC 112328406 + 112328386 112328426 41 GTACCTAGCAAAATCAGGCTGGGGATTTCCAAAAGGAAAAG GTACCTAGCAAAATCAGGCCGGGGATTTCCAAAAGGAAAAG < 41bp 0.703781152943224 0.497040750650548 NA NA prediction 0.407562305886449 Functional Loss - DCP2 ENSG00000172795 CDS Human protein_coding chr5:112328406 chr5:112328405 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11462 0 0 1 0 2 DCP2 chr5:112328369 3'AG 112328369 Downstream 37bp 10832 chr5 112328405 112328405 1 + T C UCEC 112328406 + 112328386 112328426 41 GTACCTAGCAAAATCAGGCTGGGGATTTCCAAAAGGAAAAG GTACCTAGCAAAATCAGGCCGGGGATTTCCAAAAGGAAAAG < 41bp 0.703781152943224 0.497040750650548 NA NA prediction 0.407562305886449 Functional Loss - DCP2 ENSG00000172795 CDS Human protein_coding chr5:112328406 chr5:112328405 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11462 0 0 1 0 2 DCP2 chr5:112328467 5'GT 112328467 Upstream 63bp 10833 chr1 43773477 43773477 1 + T C COAD 43773478 + 43773458 43773498 41 TATTCCCAGCTTGTGCCCCTGGTCATTTTGGGGCTGATTGC TATTCCCAGCTTGTGCCCCCGGTCATTTTGGGGCTGATTGC < 41bp 0.745540168181647 0.541762492169867 NA NA prediction 0.407555352023561 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43773478 chr1:43773477 synonymous SNV . 0 20 hm7G_associated_SNPs_11463 0 0 0 0 1 TIE1 chr1:43773467 3'AG 43773467 Downstream 11bp 10834 chr18 77477822 77477822 1 + T C rs77320492 77477823 + 77477803 77477843 41 CCGACAGGGAGAACAGCCCTGCGGCCTTTCCCGACCGGGAG CCGACAGGGAGAACAGCCCCGCGGCCTTTCCCGACCGGGAG < 41bp 0.715066599399582 0.511292163382053 NA NA prediction 0.407548872035058 Functional Loss - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77477823 chr18:77477822 synonymous SNV . 0 20 hm7G_associated_SNPs_11464 0 0 0 0 1 CTDP1 chr18:77477810 3'AG 77477810 Downstream 13bp 10835 chr19 6926378 6926378 1 + T C rs2228539 6926379 + 6926359 6926399 41 CATGCTTCTCCCCTCCAGATGGGCTGCGCCATCATCGCGGG CATGCTTCTCCCCTCCAGACGGGCTGCGCCATCATCGCGGG < 41bp 0.722162607382377 0.518399580633032 NA NA prediction 0.407526053498688 Functional Loss - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6926379 chr19:6926378 nonsynonymous SNV 0.176 0 20 hm7G_associated_SNPs_11466 0 0 0 0 1 ADGRE1 chr19:6926377 3'AG 6926377 Downstream 2bp 10836 chr19 41758339 41758339 1 + A G PRAD 41758340 + 41758320 41758360 41 TGACCATCCCAACGTCATGAGGCTCATCGGTGAGAGAGGGG TGACCATCCCAACGTCATGGGGCTCATCGGTGAGAGAGGGG < 41bp 0.746533537386275 0.542771505478591 NA NA prediction 0.407524063815368 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41758340 chr19:41758339 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_11467 0 0 0 0 2 AXL chr19:41758256 3'AG 41758256 Downstream 84bp 10837 chr19 41758339 41758339 1 + A G PRAD 41758340 + 41758320 41758360 41 TGACCATCCCAACGTCATGAGGCTCATCGGTGAGAGAGGGG TGACCATCCCAACGTCATGGGGCTCATCGGTGAGAGAGGGG < 41bp 0.746533537386275 0.542771505478591 NA NA prediction 0.407524063815368 Functional Loss - AXL ENSG00000167601 CDS Human protein_coding chr19:41758340 chr19:41758339 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_11467 0 0 0 0 2 AXL chr19:41758348 5'GT 41758348 Upstream 10bp 10838 chrX 86869563 86869563 1 + T G LUAD 86869564 + 86869544 86869584 41 TAAATTCCTTGGTGCAGTATGCTTACACAGGTAAGTGCCAA TAAATTCCTTGGTGCAGTAGGCTTACACAGGTAAGTGCCAA < 41bp 0.901894091586628 0.698137328074874 NA NA prediction 0.407513527023508 Functional Loss - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86869564 chrX:86869563 stopgain 1.000 1 20 hm7G_associated_SNPs_11468 0 0 0 0 1 KLHL4 chrX:86869573 5'GT 86869573 Upstream 11bp 10839 chr16 4908571 4908571 1 + T C STAD 4908572 + 4908552 4908592 41 TTGCTTTCACATTTTAGGGTGGAAAGAAACGTAGAAAAGAC TTGCTTTCACATTTTAGGGCGGAAAGAAACGTAGAAAAGAC < 41bp 0.747074108387757 0.543318896135532 NA NA prediction 0.40751042450445 Functional Loss - UBN1 ENSG00000118900 CDS Human protein_coding chr16:4908572 chr16:4908571 synonymous SNV . 0 20 hm7G_associated_SNPs_11469 0 0 1 0 1 UBN1 chr16:4908664 5'GT 4908664 Upstream 94bp 10840 chr3 119531741 119531741 1 + T C STAD 119531742 + 119531722 119531762 41 TTCTCCCTGCTGCCCCACATGGCTGACATGTCAACCTACAT TTCTCCCTGCTGCCCCACACGGCTGACATGTCAACCTACAT < 41bp 0.703739859421705 0.48466894321118 NA NA prediction 0.407479718843411 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119531742 chr3:119531741 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_11471 0 0 0 0 2 NR1I2 chr3:119531644 3'AG 119531644 Downstream 98bp 10841 chr3 119531741 119531741 1 + T C STAD 119531742 + 119531722 119531762 41 TTCTCCCTGCTGCCCCACATGGCTGACATGTCAACCTACAT TTCTCCCTGCTGCCCCACACGGCTGACATGTCAACCTACAT < 41bp 0.703739859421705 0.48466894321118 NA NA prediction 0.407479718843411 Functional Loss - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119531742 chr3:119531741 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_11471 0 0 0 0 2 NR1I2 chr3:119531807 5'GT 119531807 Upstream 67bp 10842 chr3 38354555 38354555 1 + T C UCEC 38354556 + 38354536 38354576 41 AAGGAGGCCAAGCAGGTGCTGTGCTACGCCGCAAGTGTGAA AAGGAGGCCAAGCAGGTGCCGTGCTACGCCGCAAGTGTGAA < 41bp 0.732368349944991 0.528630577417819 NA NA prediction 0.407475545054344 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38354556 chr3:38354555 nonsynonymous SNV 0.259 3 20 hm7G_associated_SNPs_11473 0 0 0 0 2 SLC22A14 chr3:38354490 3'AG 38354490 Downstream 66bp 10843 chr3 38354555 38354555 1 + T C UCEC 38354556 + 38354536 38354576 41 AAGGAGGCCAAGCAGGTGCTGTGCTACGCCGCAAGTGTGAA AAGGAGGCCAAGCAGGTGCCGTGCTACGCCGCAAGTGTGAA < 41bp 0.732368349944991 0.528630577417819 NA NA prediction 0.407475545054344 Functional Loss - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38354556 chr3:38354555 nonsynonymous SNV 0.259 3 20 hm7G_associated_SNPs_11473 0 0 0 0 2 SLC22A14 chr3:38354610 5'GT 38354610 Upstream 56bp 10844 chr15 50497527 50497527 1 + T G SKCM 50497528 + 50497508 50497548 41 CTGTCATTCAGTATATCGGTGAACTGCTTCGGTATTTATGC CTGTCATTCAGTATATCGGGGAACTGCTTCGGTATTTATGC < 41bp 0.703737661742294 0.356582363103812 NA NA prediction 0.407475323484588 Functional Loss - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50497528 chr15:50497527 synonymous SNV . 0 20 hm7G_associated_SNPs_11474 0 0 0 0 2 SLC27A2 chr15:50497436 3'AG 50497436 Downstream 92bp 10845 chr15 50497527 50497527 1 + T G SKCM 50497528 + 50497508 50497548 41 CTGTCATTCAGTATATCGGTGAACTGCTTCGGTATTTATGC CTGTCATTCAGTATATCGGGGAACTGCTTCGGTATTTATGC < 41bp 0.703737661742294 0.356582363103812 NA NA prediction 0.407475323484588 Functional Loss - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50497528 chr15:50497527 synonymous SNV . 0 20 hm7G_associated_SNPs_11474 0 0 0 0 2 SLC27A2 chr15:50497560 5'GT 50497560 Upstream 34bp 10846 chr5 134059289 134059289 1 + T C GBM 134059290 + 134059270 134059310 41 AACTTGATACACCAGAATCTGCCAGAATAATAGCTTTCATC AACTTGATACACCAGAATCCGCCAGAATAATAGCTTTCATC < 41bp 0.703735012266345 0.496951223584784 NA NA prediction 0.40747002453269 Functional Loss - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134059290 chr5:134059289 synonymous SNV . 0 20 hm7G_associated_SNPs_11475 0 0 1 0 2 SEC24A chr5:134059257 3'AG 134059257 Downstream 33bp 10847 chr5 134059289 134059289 1 + T C GBM 134059290 + 134059270 134059310 41 AACTTGATACACCAGAATCTGCCAGAATAATAGCTTTCATC AACTTGATACACCAGAATCCGCCAGAATAATAGCTTTCATC < 41bp 0.703735012266345 0.496951223584784 NA NA prediction 0.40747002453269 Functional Loss - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134059290 chr5:134059289 synonymous SNV . 0 20 hm7G_associated_SNPs_11475 0 0 1 0 2 SEC24A chr5:134059360 5'GT 134059360 Upstream 72bp 10848 chr11 33079616 33079616 1 + T C UCEC 33079617 + 33079597 33079637 41 ATTGGCATGATGGGGACACTGTGTGCACCTGCTCGAGATGA ATTGGCATGATGGGGACACCGTGTGCACCTGCTCGAGATGA < 41bp 0.713039057433733 0.509314415097482 NA NA prediction 0.407449284672501 Functional Loss - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33079617 chr11:33079616 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_11480 0 0 1 0 1 TCP11L1 chr11:33079685 5'GT 33079685 Upstream 70bp 10849 chr10 93576910 93576910 1 + T C LIHC 93576911 + 93576891 93576931 41 TGCTGTTACAGCATGGAGCTGAGCCAACCATCCGAAATACA TGCTGTTACAGCATGGAGCCGAGCCAACCATCCGAAATACA < 41bp 0.746846584900893 0.543131099171741 NA NA prediction 0.407430971458304 Functional Loss - TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93576911 chr10:93576910 synonymous SNV . 0 20 hm7G_associated_SNPs_11481 0 0 1 0 2 TNKS2 chr10:93576891 3'AG 93576891 Downstream 20bp 10850 chr10 93576910 93576910 1 + T C LIHC 93576911 + 93576891 93576931 41 TGCTGTTACAGCATGGAGCTGAGCCAACCATCCGAAATACA TGCTGTTACAGCATGGAGCCGAGCCAACCATCCGAAATACA < 41bp 0.746846584900893 0.543131099171741 NA NA prediction 0.407430971458304 Functional Loss - TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93576911 chr10:93576910 synonymous SNV . 0 20 hm7G_associated_SNPs_11481 0 0 1 0 2 TNKS2 chr10:93576986 5'GT 93576986 Upstream 77bp 10851 chr20 39984586 39984586 1 + T C UCEC 39984587 + 39984567 39984607 41 GATGCCCCAGACAGCCCTGTGATCCTGGAGATCCCCTCCTT GATGCCCCAGACAGCCCTGCGATCCTGGAGATCCCCTCCTT < 41bp 0.737586891106477 0.533884924924662 NA NA prediction 0.40740393236363 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39984587 chr20:39984586 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_11483 0 0 1 0 2 LPIN3 chr20:39984536 3'AG 39984536 Downstream 51bp 10852 chr20 39984586 39984586 1 + T C UCEC 39984587 + 39984567 39984607 41 GATGCCCCAGACAGCCCTGTGATCCTGGAGATCCCCTCCTT GATGCCCCAGACAGCCCTGCGATCCTGGAGATCCCCTCCTT < 41bp 0.737586891106477 0.533884924924662 NA NA prediction 0.40740393236363 Functional Loss - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39984587 chr20:39984586 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_11483 0 0 1 0 2 LPIN3 chr20:39984674 5'GT 39984674 Upstream 89bp 10853 chr2 1459985 1459985 1 + A G HNSC 1459986 + 1459966 1460006 41 CACCACAGAGCACCAGCAAAGCTGCCTTCGGGGGAGGGGCT CACCACAGAGCACCAGCAAGGCTGCCTTCGGGGGAGGGGCT < 41bp 0.703698486110848 0.487098382017499 NA NA prediction 0.407396972221695 Functional Loss - TPO ENSG00000115705 CDS Human protein_coding chr2:1459986 chr2:1459985 synonymous SNV . 0 20 hm7G_associated_SNPs_11484 0 0 0 0 1 TPO chr2:1460054 5'GT 1460054 Upstream 70bp 10854 chr17 26856126 26856126 1 + T C rs35240903 26856127 + 26856107 26856147 41 CTCAGTACTCGCCAGGTGGTGGCAGCTACCCCATACCCTAC CTCAGTACTCGCCAGGTGGCGGCAGCTACCCCATACCCTAC < 41bp 0.724002808098713 0.520306711248574 NA NA prediction 0.407392193700279 Functional Loss - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26856127 chr17:26856126 synonymous SNV . 0 20 hm7G_associated_SNPs_11485 2 0 0 0 1 FOXN1 chr17:26856112 3'AG 26856112 Downstream 15bp 10855 chr1 168013850 168013850 1 + T C rs11558511 168013851 + 168013831 168013871 41 GAAGAATCATCAGAGGATGTGACAAAATATCAGGAAGGAGT GAAGAATCATCAGAGGATGCGACAAAATATCAGGAAGGAGT < 41bp 0.722790847753978 0.519096732862714 NA NA prediction 0.407388229782528 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168013851 chr1:168013850 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_11486 0 0 1 0 2 DCAF6 chr1:168013823 3'AG 168013823 Downstream 28bp 10856 chr1 168013850 168013850 1 + T C rs11558511 168013851 + 168013831 168013871 41 GAAGAATCATCAGAGGATGTGACAAAATATCAGGAAGGAGT GAAGAATCATCAGAGGATGCGACAAAATATCAGGAAGGAGT < 41bp 0.722790847753978 0.519096732862714 NA NA prediction 0.407388229782528 Functional Loss - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168013851 chr1:168013850 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_11486 0 0 1 0 2 DCAF6 chr1:168013909 5'GT 168013909 Upstream 60bp 10857 chr20 20232251 20232251 1 + T C PRAD 20232252 + 20232232 20232272 41 TTTGCAGCCACTGTTTTAATGATAAAGATTATGCACTGATG TTTGCAGCCACTGTTTTAACGATAAAGATTATGCACTGATG < 41bp 0.706589620612291 0.502898309582869 NA NA prediction 0.407382622058844 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20232252 chr20:20232251 synonymous SNV . 0 20 hm7G_associated_SNPs_11487 0 0 0 3 1 CFAP61 chr20:20232239 3'AG 20232239 Downstream 13bp 10858 chr19 36590446 36590446 1 + T C rs139749569 36590447 + 36590427 36590467 41 GATTGCTACTTTACCCCCATGAAGCCCGAGAGTCTGGAGAA GATTGCTACTTTACCCCCACGAAGCCCGAGAGTCTGGAGAA < 41bp 0.764131687520804 0.56044058240735 NA NA prediction 0.407382210226908 Functional Loss - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36590447 chr19:36590446 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_11488 1 0 1 0 1 WDR62 chr19:36590519 5'GT 36590519 Upstream 74bp 10859 chr6 160237001 160237001 1 + T C PRAD 160237002 + 160236982 160237022 41 TATTTTTCTTTTCCAATAGTGACTTGAATCCCACCAAGAAT TATTTTTCTTTTCCAATAGCGACTTGAATCCCACCAAGAAT < 41bp 0.707581815879705 0.503890817579588 NA NA prediction 0.407381996600234 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160237002 chr6:160237001 synonymous SNV . 0 20 hm7G_associated_SNPs_11489 0 0 1 0 2 PNLDC1 chr6:160237001 3'AG 160237001 Downstream 1bp 10860 chr6 160237001 160237001 1 + T C PRAD 160237002 + 160236982 160237022 41 TATTTTTCTTTTCCAATAGTGACTTGAATCCCACCAAGAAT TATTTTTCTTTTCCAATAGCGACTTGAATCCCACCAAGAAT < 41bp 0.707581815879705 0.503890817579588 NA NA prediction 0.407381996600234 Functional Loss - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160237002 chr6:160237001 synonymous SNV . 0 20 hm7G_associated_SNPs_11489 0 0 1 0 2 PNLDC1 chr6:160237065 5'GT 160237065 Upstream 65bp 10861 chr9 131749094 131749094 1 + T C LIHC 131749095 + 131749075 131749115 41 TTCTGGAGTCCAGGTTGCCTGATCTTGGAGCTGATTCATGC TTCTGGAGTCCAGGTTGCCCGATCTTGGAGCTGATTCATGC < 41bp 0.741462788928915 0.537782195780095 NA NA prediction 0.40736118629764 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749095 chr9:131749094 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_11490 0 0 1 0 2 NUP188 chr9:131749088 3'AG 131749088 Downstream 7bp 10862 chr9 131749094 131749094 1 + T C LIHC 131749095 + 131749075 131749115 41 TTCTGGAGTCCAGGTTGCCTGATCTTGGAGCTGATTCATGC TTCTGGAGTCCAGGTTGCCCGATCTTGGAGCTGATTCATGC < 41bp 0.741462788928915 0.537782195780095 NA NA prediction 0.40736118629764 Functional Loss - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749095 chr9:131749094 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_11490 0 0 1 0 2 NUP188 chr9:131749154 5'GT 131749154 Upstream 61bp 10863 chr16 3705507 3705507 1 + A G UCEC 3705508 + 3705488 3705528 41 GTCCAATGCCACCCTCGTCAGCTACATTGTGCAGGTGAGGC GTCCAATGCCACCCTCGTCGGCTACATTGTGCAGGTGAGGC < 41bp 0.7631485593888 0.55948113146105 NA NA prediction 0.407334855855499 Functional Loss - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3705508 chr16:3705507 nonsynonymous SNV 0.035 0 20 hm7G_associated_SNPs_11492 0 0 1 0 1 DNASE1 chr16:3705521 5'GT 3705521 Upstream 15bp 10864 chr4 123868396 123868396 1 + T C UCEC 123868397 + 123868377 123868417 41 TATTTTGTTAGGAAGTAAGTGAAGGACAAGTGTTGGTTCTT TATTTTGTTAGGAAGTAAGCGAAGGACAAGTGTTGGTTCTT < 41bp 0.703788920350047 0.50012444366435 NA NA prediction 0.407328953371396 Functional Loss - SPATA5 ENSG00000145375 CDS Human protein_coding chr4:123868397 chr4:123868396 synonymous SNV . 0 20 hm7G_associated_SNPs_11493 0 0 1 0 1 SPATA5 chr4:123868388 3'AG 123868388 Downstream 9bp 10865 chr22 38254698 38254698 1 + T C COAD 38254699 + 38254679 38254719 41 CTTTCAGATGCTGTCTTCCTGATTTTATACAAAGAATTATA CTTTCAGATGCTGTCTTCCCGATTTTATACAAAGAATTATA < 41bp 0.734399866372419 0.530747168588785 NA NA prediction 0.407305395567268 Functional Loss - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38254699 chr22:38254698 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_11495 0 0 1 0 1 EIF3L chr22:38254686 3'AG 38254686 Downstream 13bp 10866 chr10 91477354 91477354 1 + T C LUAD 91477355 + 91477335 91477375 41 TATCTTTATGTGATCTTGCTGGTTCAGAACGAACTATGAAG TATCTTTATGTGATCTTGCCGGTTCAGAACGAACTATGAAG < 41bp 0.730823602913729 0.527172556279898 NA NA prediction 0.407302093267664 Functional Loss - KIF20B ENSG00000138182 CDS Human protein_coding chr10:91477355 chr10:91477354 synonymous SNV . 0 20 hm7G_associated_SNPs_11496 0 0 1 0 1 KIF20B chr10:91477333 3'AG 91477333 Downstream 22bp 10867 chr1 203472112 203472112 1 + T C rs79523790 203472113 + 203472093 203472133 41 ATCCCGGGGCCTTTGCCCCTGAGCCTGCGCTCTGTACACCT ATCCCGGGGCCTTTGCCCCCGAGCCTGCGCTCTGTACACCT < 41bp 0.727011244583068 0.523369086210654 NA NA prediction 0.407284316744829 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472113 chr1:203472112 nonsynonymous SNV 0.860 0 20 hm7G_associated_SNPs_11499 0 0 0 0 2 OPTC chr1:203472042 3'AG 203472042 Downstream 71bp 10868 chr1 203472112 203472112 1 + T C rs79523790 203472113 + 203472093 203472133 41 ATCCCGGGGCCTTTGCCCCTGAGCCTGCGCTCTGTACACCT ATCCCGGGGCCTTTGCCCCCGAGCCTGCGCTCTGTACACCT < 41bp 0.727011244583068 0.523369086210654 NA NA prediction 0.407284316744829 Functional Loss - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472113 chr1:203472112 nonsynonymous SNV 0.860 0 20 hm7G_associated_SNPs_11499 0 0 0 0 2 OPTC chr1:203472137 5'GT 203472137 Upstream 26bp 10869 chr2 79254170 79254170 1 + A G LUSC 79254171 + 79254151 79254191 41 CCCTCAAAGCTGGCTTGCCAGAAGCGGCCCTCTGGAAAACT CCCTCAAAGCTGGCTTGCCGGAAGCGGCCCTCTGGAAAACT < 41bp 0.703642001201547 0.49853811213505 NA NA prediction 0.407284002403093 Functional Loss - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254171 chr2:79254170 nonsynonymous SNV 0.766 1 20 hm7G_associated_SNPs_11500 0 0 0 0 1 REG3G chr2:79254160 3'AG 79254160 Downstream 11bp 10870 chr20 3802916 3802916 1 + A G GBM 3802917 + 3802897 3802937 41 AGGGACAGGCTTCTCCGGAAGGAACAGATTTTAGCTGTGGC AGGGACAGGCTTCTCCGGAGGGAACAGATTTTAGCTGTGGC < 41bp 0.765460194473909 0.561820335138645 NA NA prediction 0.407279718670527 Functional Loss - AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802917 chr20:3802916 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_11501 0 0 1 0 1 AP5S1 chr20:3802940 5'GT 3802940 Upstream 25bp 10871 chr2 3743897 3743897 1 + T G SKCM 3743898 + 3743878 3743918 41 AAAGTCTATGGCGGATGGTTGGGAAACTGCAAGAAGGCTGG AAAGTCTATGGCGGATGGTGGGGAAACTGCAAGAAGGCTGG < 41bp 0.898070464887476 0.69443224386105 NA NA prediction 0.407276442052853 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3743898 chr2:3743897 nonsynonymous SNV 0.667 4 20 hm7G_associated_SNPs_11502 0 0 0 0 2 ALLC chr2:3743865 3'AG 3743865 Downstream 33bp 10872 chr2 3743897 3743897 1 + T G SKCM 3743898 + 3743878 3743918 41 AAAGTCTATGGCGGATGGTTGGGAAACTGCAAGAAGGCTGG AAAGTCTATGGCGGATGGTGGGGAAACTGCAAGAAGGCTGG < 41bp 0.898070464887476 0.69443224386105 NA NA prediction 0.407276442052853 Functional Loss - ALLC ENSG00000151360 CDS Human protein_coding chr2:3743898 chr2:3743897 nonsynonymous SNV 0.667 4 20 hm7G_associated_SNPs_11502 0 0 0 0 2 ALLC chr2:3743938 5'GT 3743938 Upstream 42bp 10873 chr1 201183402 201183402 1 + T C rs1568810 201183403 + 201183383 201183423 41 TCACCAGTGACCTGGGACCTGGCACCTGGTTTAAGGATGGC TCACCAGTGACCTGGGACCCGGCACCTGGTTTAAGGATGGC < 41bp 0.70362044825319 0.495047656999804 NA NA prediction 0.40724089650638 Functional Loss - IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201183403 chr1:201183402 synonymous SNV . 0 20 hm7G_associated_SNPs_11505 0 0 0 0 2 IGFN1 chr1:201183305 3'AG 201183305 Downstream 98bp 10874 chr1 201183402 201183402 1 + T C rs1568810 201183403 + 201183383 201183423 41 TCACCAGTGACCTGGGACCTGGCACCTGGTTTAAGGATGGC TCACCAGTGACCTGGGACCCGGCACCTGGTTTAAGGATGGC < 41bp 0.70362044825319 0.495047656999804 NA NA prediction 0.40724089650638 Functional Loss - IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201183403 chr1:201183402 synonymous SNV . 0 20 hm7G_associated_SNPs_11505 0 0 0 0 2 IGFN1 chr1:201183429 5'GT 201183429 Upstream 28bp 10875 chr6 35254112 35254112 1 + T C PAAD 35254113 + 35254093 35254133 41 TTACAGAAGCTCTCTCCTTTGAGGATGGTCAGCCTGTGCAG TTACAGAAGCTCTCTCCTTCGAGGATGGTCAGCCTGTGCAG < 41bp 0.710394551525359 0.50678508873089 NA NA prediction 0.407218925588938 Functional Loss - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35254113 chr6:35254112 synonymous SNV . 0 20 hm7G_associated_SNPs_11507 0 0 1 0 2 ZNF76 chr6:35254099 3'AG 35254099 Downstream 14bp 10876 chr6 35254112 35254112 1 + T C PAAD 35254113 + 35254093 35254133 41 TTACAGAAGCTCTCTCCTTTGAGGATGGTCAGCCTGTGCAG TTACAGAAGCTCTCTCCTTCGAGGATGGTCAGCCTGTGCAG < 41bp 0.710394551525359 0.50678508873089 NA NA prediction 0.407218925588938 Functional Loss - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35254113 chr6:35254112 synonymous SNV . 0 20 hm7G_associated_SNPs_11507 0 0 1 0 2 ZNF76 chr6:35254176 5'GT 35254176 Upstream 65bp 10877 chr13 100920966 100920966 1 + T C UCEC 100920967 + 100920947 100920987 41 TAGGTGATAAACATGGGAATGCTTTATGGCTTAATGAAAGA TAGGTGATAAACATGGGAACGCTTTATGGCTTAATGAAAGA < 41bp 0.703604659645856 0.498356381366922 NA NA prediction 0.407209319291712 Functional Loss - PCCA ENSG00000175198 CDS Human protein_coding chr13:100920967 chr13:100920966 synonymous SNV . 0 20 hm7G_associated_SNPs_11508 0 0 1 0 2 PCCA chr13:100920943 3'AG 100920943 Downstream 24bp 10878 chr13 100920966 100920966 1 + T C UCEC 100920967 + 100920947 100920987 41 TAGGTGATAAACATGGGAATGCTTTATGGCTTAATGAAAGA TAGGTGATAAACATGGGAACGCTTTATGGCTTAATGAAAGA < 41bp 0.703604659645856 0.498356381366922 NA NA prediction 0.407209319291712 Functional Loss - PCCA ENSG00000175198 CDS Human protein_coding chr13:100920967 chr13:100920966 synonymous SNV . 0 20 hm7G_associated_SNPs_11508 0 0 1 0 2 PCCA chr13:100921037 5'GT 100921037 Upstream 72bp 10879 chr2 219251456 219251456 1 + A G STAD 219251457 + 219251437 219251477 41 TTGCATTCAATCTGCTCTCAGCTGGACGGTACCACCCCAGT TTGCATTCAATCTGCTCTCGGCTGGACGGTACCACCCCAGT < 41bp 0.703594870282598 0.48840149374775 NA NA prediction 0.407189740565196 Functional Loss - SLC11A1 ENSG00000018280 CDS Human protein_coding chr2:219251457 chr2:219251456 synonymous SNV . 0 20 hm7G_associated_SNPs_11509 0 0 0 0 1 SLC11A1 chr2:219251464 5'GT 219251464 Upstream 9bp 10880 chr3 39116415 39116415 1 + T G UCEC 39116416 + 39116396 39116436 41 TGACATTCGGGTGCTAATTTGTGAAGAAAAAGCACCAGTTC TGACATTCGGGTGCTAATTGGTGAAGAAAAAGCACCAGTTC < 41bp 0.703589776934621 0.388029255383206 NA NA prediction 0.407179553869242 Functional Loss - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39116416 chr3:39116415 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11510 0 0 1 0 1 WDR48 chr3:39116441 5'GT 39116441 Upstream 27bp 10881 chr17 40841590 40841590 1 + T C UCEC 40841591 + 40841571 40841611 41 GCTGCTACCAGTCTTGGGATGACTTCATTTGCTACTGCGAA GCTGCTACCAGTCTTGGGACGACTTCATTTGCTACTGCGAA < 41bp 0.751198193870189 0.547617782981618 NA NA prediction 0.407160821777143 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40841591 chr17:40841590 synonymous SNV . 0 20 hm7G_associated_SNPs_11511 0 0 0 0 2 CNTNAP1 chr17:40841539 3'AG 40841539 Downstream 52bp 10882 chr17 40841590 40841590 1 + T C UCEC 40841591 + 40841571 40841611 41 GCTGCTACCAGTCTTGGGATGACTTCATTTGCTACTGCGAA GCTGCTACCAGTCTTGGGACGACTTCATTTGCTACTGCGAA < 41bp 0.751198193870189 0.547617782981618 NA NA prediction 0.407160821777143 Functional Loss - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40841591 chr17:40841590 synonymous SNV . 0 20 hm7G_associated_SNPs_11511 0 0 0 0 2 CNTNAP1 chr17:40841645 5'GT 40841645 Upstream 56bp 10883 chr11 66328055 66328055 1 + A G rs2229455 66328056 + 66328036 66328076 41 GTCCCCAGAGCCTGCTGACAGCGCACGATCAGTTCAAGGCA GTCCCCAGAGCCTGCTGACGGCGCACGATCAGTTCAAGGCA < 41bp 0.741829272817277 0.538251653483167 NA NA prediction 0.40715523866822 Functional Loss - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66328056 chr11:66328055 unknown . 0 20 hm7G_associated_SNPs_11512 0 0 0 0 1 ACTN3 chr11:66328044 3'AG 66328044 Downstream 12bp 10884 chr1 158262114 158262114 1 + T C ESCA 158262115 + 158262095 158262135 41 ACTTGCCCCCGATTTCTCTTGGGTCTCCTGGATGCAGGGAA ACTTGCCCCCGATTTCTCTCGGGTCTCCTGGATGCAGGGAA < 41bp 0.719259914898481 0.515685983542548 NA NA prediction 0.407147862711867 Functional Loss - CD1C ENSG00000158481 CDS Human protein_coding chr1:158262115 chr1:158262114 nonsynonymous SNV 0.033 0 20 hm7G_associated_SNPs_11513 0 0 0 0 1 CD1C chr1:158262155 5'GT 158262155 Upstream 42bp 10885 chr3 113302287 113302287 1 + T C GBM 113302288 + 113302268 113302308 41 CCAGGCGAGCAGTTCTTCGTGGTATTTGTGATAAAGCCTGA CCAGGCGAGCAGTTCTTCGCGGTATTTGTGATAAAGCCTGA < 41bp 0.74885289507357 0.545278994015906 NA NA prediction 0.407147802115329 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113302288 chr3:113302287 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11514 0 0 0 0 2 SIDT1 chr3:113302237 3'AG 113302237 Downstream 51bp 10886 chr3 113302287 113302287 1 + T C GBM 113302288 + 113302268 113302308 41 CCAGGCGAGCAGTTCTTCGTGGTATTTGTGATAAAGCCTGA CCAGGCGAGCAGTTCTTCGCGGTATTTGTGATAAAGCCTGA < 41bp 0.74885289507357 0.545278994015906 NA NA prediction 0.407147802115329 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113302288 chr3:113302287 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11514 0 0 0 0 2 SIDT1 chr3:113302256 3'AG 113302256 Downstream 32bp 10887 chr8 124820546 124820546 1 + T C STAD 124820547 + 124820527 124820567 41 CTTCTGGCTCAGATGTAAATGGGAGTACAGAGTCATTTGAA CTTCTGGCTCAGATGTAAACGGGAGTACAGAGTCATTTGAA < 41bp 0.744740833294434 0.541176666639187 NA NA prediction 0.407128333310495 Functional Loss - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124820547 chr8:124820546 synonymous SNV . 0 20 hm7G_associated_SNPs_11515 0 0 1 0 2 FAM91A1 chr8:124820512 3'AG 124820512 Downstream 35bp 10888 chr8 124820546 124820546 1 + T C STAD 124820547 + 124820527 124820567 41 CTTCTGGCTCAGATGTAAATGGGAGTACAGAGTCATTTGAA CTTCTGGCTCAGATGTAAACGGGAGTACAGAGTCATTTGAA < 41bp 0.744740833294434 0.541176666639187 NA NA prediction 0.407128333310495 Functional Loss - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124820547 chr8:124820546 synonymous SNV . 0 20 hm7G_associated_SNPs_11515 0 0 1 0 2 FAM91A1 chr8:124820616 5'GT 124820616 Upstream 71bp 10889 chr6 160199267 160199267 1 + T C LIHC 160199268 + 160199248 160199288 41 TCAATGAAGCCTTTGCAGCTGTCTCTGCTGCAATAGTTAAA TCAATGAAGCCTTTGCAGCCGTCTCTGCTGCAATAGTTAAA < 41bp 0.720453365188006 0.516890262021137 NA NA prediction 0.407126206333739 Functional Loss - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160199268 chr6:160199267 synonymous SNV . 0 20 hm7G_associated_SNPs_11516 0 0 1 0 2 ACAT2 chr6:160199202 3'AG 160199202 Downstream 66bp 10890 chr6 160199267 160199267 1 + T C LIHC 160199268 + 160199248 160199288 41 TCAATGAAGCCTTTGCAGCTGTCTCTGCTGCAATAGTTAAA TCAATGAAGCCTTTGCAGCCGTCTCTGCTGCAATAGTTAAA < 41bp 0.720453365188006 0.516890262021137 NA NA prediction 0.407126206333739 Functional Loss - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160199268 chr6:160199267 synonymous SNV . 0 20 hm7G_associated_SNPs_11516 0 0 1 0 2 ACAT2 chr6:160199312 5'GT 160199312 Upstream 46bp 10891 chr10 103291024 103291024 1 + T C LIHC 103291025 + 103291005 103291045 41 TATTCAAAAACAAACCTCCTGACGGGAATGCTCCTCCCAAC TATTCAAAAACAAACCTCCCGACGGGAATGCTCCTCCCAAC < 41bp 0.734469197228894 0.53091038749882 NA NA prediction 0.407117619460148 Functional Loss - BTRC ENSG00000166167 CDS Human protein_coding chr10:103291025 chr10:103291024 synonymous SNV . 0 20 hm7G_associated_SNPs_11517 0 0 1 0 2 BTRC chr10:103290994 3'AG 103290994 Downstream 31bp 10892 chr10 103291024 103291024 1 + T C LIHC 103291025 + 103291005 103291045 41 TATTCAAAAACAAACCTCCTGACGGGAATGCTCCTCCCAAC TATTCAAAAACAAACCTCCCGACGGGAATGCTCCTCCCAAC < 41bp 0.734469197228894 0.53091038749882 NA NA prediction 0.407117619460148 Functional Loss - BTRC ENSG00000166167 CDS Human protein_coding chr10:103291025 chr10:103291024 synonymous SNV . 0 20 hm7G_associated_SNPs_11517 0 0 1 0 2 BTRC chr10:103291090 5'GT 103291090 Upstream 67bp 10893 chr3 49720689 49720689 1 + A G KIRP 49720690 + 49720670 49720710 41 GCTCCTGCTCTATCCCAAAAGCACCCACGCATTATCAGAGG GCTCCTGCTCTATCCCAAAGGCACCCACGCATTATCAGAGG < 41bp 0.741144107567309 0.537590763433019 NA NA prediction 0.407106688268579 Functional Loss - APEH ENSG00000164062 CDS Human protein_coding chr3:49720690 chr3:49720689 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_11520 0 0 0 0 1 APEH chr3:49720670 3'AG 49720670 Downstream 20bp 10894 chr2 233626121 233626121 1 + T C LUAD 233626122 + 233626102 233626142 41 CCAGGGGTGACAGACGTTTTGAAAAACCAGGACGAAAAGAT CCAGGGGTGACAGACGTTTCGAAAAACCAGGACGAAAAGAT < 41bp 0.726193146331918 0.522648713327369 NA NA prediction 0.407088866009098 Functional Loss - GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233626122 chr2:233626121 synonymous SNV . 0 20 hm7G_associated_SNPs_11522 0 0 1 0 2 GIGYF2 chr2:233626106 3'AG 233626106 Downstream 16bp 10895 chr2 233626121 233626121 1 + T C LUAD 233626122 + 233626102 233626142 41 CCAGGGGTGACAGACGTTTTGAAAAACCAGGACGAAAAGAT CCAGGGGTGACAGACGTTTCGAAAAACCAGGACGAAAAGAT < 41bp 0.726193146331918 0.522648713327369 NA NA prediction 0.407088866009098 Functional Loss - GIGYF2 ENSG00000204120 CDS Human protein_coding chr2:233626122 chr2:233626121 synonymous SNV . 0 20 hm7G_associated_SNPs_11522 0 0 1 0 2 GIGYF2 chr2:233626146 5'GT 233626146 Upstream 26bp 10896 chr1 17264939 17264939 1 + T C LIHC 17264940 + 17264920 17264960 41 CGGCCCTGGAGACAGAGGATGGAGAGGGGCTACAGCAGACC CGGCCCTGGAGACAGAGGACGGAGAGGGGCTACAGCAGACC < 41bp 0.703535278662199 0.494995956120887 NA NA prediction 0.407070557324398 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17264940 chr1:17264939 synonymous SNV . 0 20 hm7G_associated_SNPs_11523 0 0 0 0 2 CROCC chr1:17264895 3'AG 17264895 Downstream 45bp 10897 chr1 17264939 17264939 1 + T C LIHC 17264940 + 17264920 17264960 41 CGGCCCTGGAGACAGAGGATGGAGAGGGGCTACAGCAGACC CGGCCCTGGAGACAGAGGACGGAGAGGGGCTACAGCAGACC < 41bp 0.703535278662199 0.494995956120887 NA NA prediction 0.407070557324398 Functional Loss - CROCC ENSG00000058453 CDS Human protein_coding chr1:17264940 chr1:17264939 synonymous SNV . 0 20 hm7G_associated_SNPs_11523 0 0 0 0 2 CROCC chr1:17264978 5'GT 17264978 Upstream 40bp 10898 chr16 81819768 81819768 1 + T C rs1143685 81819769 + 81819749 81819789 41 TGGCCTGGAGCAAGACCGCTGACAAGATCGAGGGCTTCTGT TGGCCTGGAGCAAGACCGCCGACAAGATCGAGGGCTTCTGT < 41bp 0.742630008603007 0.53909586886822 NA NA prediction 0.407068279469573 Functional Loss - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81819769 chr16:81819768 synonymous SNV . 0 20 hm7G_associated_SNPs_11524 1 0 0 0 1 PLCG2 chr16:81819787 5'GT 81819787 Upstream 20bp 10899 chr22 30418109 30418109 1 + T C PRAD 30418110 + 30418090 30418130 41 GAAGCCAGCTGGGAGCAGGTGGATAAACAGGACACAGAGGT GAAGCCAGCTGGGAGCAGGCGGATAAACAGGACACAGAGGT < 41bp 0.749415338677591 0.545887022475945 NA NA prediction 0.407056632403292 Functional Loss - MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30418110 chr22:30418109 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11526 0 0 0 0 2 MTMR3 chr22:30418018 3'AG 30418018 Downstream 92bp 10900 chr22 30418109 30418109 1 + T C PRAD 30418110 + 30418090 30418130 41 GAAGCCAGCTGGGAGCAGGTGGATAAACAGGACACAGAGGT GAAGCCAGCTGGGAGCAGGCGGATAAACAGGACACAGAGGT < 41bp 0.749415338677591 0.545887022475945 NA NA prediction 0.407056632403292 Functional Loss - MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30418110 chr22:30418109 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11526 0 0 0 0 2 MTMR3 chr22:30418128 5'GT 30418128 Upstream 20bp 10901 chr2 29366660 29366660 1 + A G LIHC 29366661 + 29366641 29366681 41 GACGCCGCAGCCACTGCTAAGGAAATCAAGCAGATGCTTCT GACGCCGCAGCCACTGCTAGGGAAATCAAGCAGATGCTTCT < 41bp 0.703525674935678 0.497418299107532 NA NA prediction 0.407051349871357 Functional Loss - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29366661 chr2:29366660 nonsynonymous SNV 0.372 3 20 hm7G_associated_SNPs_11527 0 0 0 0 1 CLIP4 chr2:29366575 3'AG 29366575 Downstream 86bp 10902 chr11 7441849 7441849 1 + T C UCEC 7441850 + 7441830 7441870 41 TCGGAAGCCCATTGCACACTGGCATTCCCTGGTGGAGGTAA TCGGAAGCCCATTGCACACCGGCATTCCCTGGTGGAGGTAA < 41bp 0.731054886009669 0.527529445973732 NA NA prediction 0.407050880071874 Functional Loss - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7441850 chr11:7441849 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11529 0 0 0 2 1 SYT9 chr11:7441866 5'GT 7441866 Upstream 18bp 10903 chr12 99106135 99106135 1 + T C CHOL 99106136 + 99106116 99106156 41 GTCAGATTGATTATCTGACTGAAGCTCAAGTTAGCTGCTGT GTCAGATTGATTATCTGACCGAAGCTCAAGTTAGCTGCTGT < 41bp 0.724784081024548 0.521267625782625 NA NA prediction 0.407032910483846 Functional Loss - APAF1 ENSG00000120868 CDS Human protein_coding chr12:99106136 chr12:99106135 synonymous SNV . 0 20 hm7G_associated_SNPs_11530 0 0 1 0 2 APAF1 chr12:99106097 3'AG 99106097 Downstream 39bp 10904 chr12 99106135 99106135 1 + T C CHOL 99106136 + 99106116 99106156 41 GTCAGATTGATTATCTGACTGAAGCTCAAGTTAGCTGCTGT GTCAGATTGATTATCTGACCGAAGCTCAAGTTAGCTGCTGT < 41bp 0.724784081024548 0.521267625782625 NA NA prediction 0.407032910483846 Functional Loss - APAF1 ENSG00000120868 CDS Human protein_coding chr12:99106136 chr12:99106135 synonymous SNV . 0 20 hm7G_associated_SNPs_11530 0 0 1 0 2 APAF1 chr12:99106213 5'GT 99106213 Upstream 79bp 10905 chr16 30734296 30734296 1 + T C COAD 30734297 + 30734277 30734317 41 CTTGCAGTGCCACCAACCATGGTGAATAATACAGGCGTGGT CTTGCAGTGCCACCAACCACGGTGAATAATACAGGCGTGGT < 41bp 0.706532738434133 0.503017323244428 NA NA prediction 0.407030830379409 Functional Loss - SRCAP ENSG00000080603 CDS Human protein_coding chr16:30734297 chr16:30734296 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11531 0 0 1 0 1 SRCAP chr16:30734284 3'AG 30734284 Downstream 13bp 10906 chr2 102851708 102851708 1 + T C rs2302612 102851709 + 102851689 102851729 41 TTTCCTCCGGTCCAGCTGCTGCAGCACACACCTTGCTACCG TTTCCTCCGGTCCAGCTGCCGCAGCACACACCTTGCTACCG < 41bp 0.716851411542856 0.513344592118704 NA NA prediction 0.407013638848304 Functional Loss - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102851709 chr2:102851708 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_11532 0 1 0 0 1 IL1RL2 chr2:102851737 5'GT 102851737 Upstream 30bp 10907 chr4 177071069 177071069 1 + T C GBM 177071070 + 177071050 177071090 41 CCTGTACAAATAAATATTCTGGCAGACAGATCTTGGGAAGA CCTGTACAAATAAATATTCCGGCAGACAGATCTTGGGAAGA < 41bp 0.712303375637252 0.508799736232985 NA NA prediction 0.407007278808534 Functional Loss - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177071070 chr4:177071069 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11533 0 0 1 0 1 WDR17 chr4:177071107 5'GT 177071107 Upstream 39bp 10908 chr1 150476813 150476813 1 + T G COAD 150476814 + 150476794 150476834 41 CCATCTGTTTCCTGTAGATTGACGTGCACCTCCACGATGCC CCATCTGTTTCCTGTAGATGGACGTGCACCTCCACGATGCC < 41bp 0.703501527154174 0.350631210871581 NA NA prediction 0.407003054308348 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150476814 chr1:150476813 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_11534 0 0 1 0 2 TARS2 chr1:150476811 3'AG 150476811 Downstream 3bp 10909 chr1 150476813 150476813 1 + T G COAD 150476814 + 150476794 150476834 41 CCATCTGTTTCCTGTAGATTGACGTGCACCTCCACGATGCC CCATCTGTTTCCTGTAGATGGACGTGCACCTCCACGATGCC < 41bp 0.703501527154174 0.350631210871581 NA NA prediction 0.407003054308348 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150476814 chr1:150476813 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_11534 0 0 1 0 2 TARS2 chr1:150476911 5'GT 150476911 Upstream 99bp 10910 chr12 54914544 54914544 1 + T C READ 54914545 + 54914525 54914565 41 AATCTGCCATGTTGCGTTATGCCATTGCTTTCCCCCTGATT AATCTGCCATGTTGCGTTACGCCATTGCTTTCCCCCTGATT < 41bp 0.703500445561812 0.487383201306844 NA NA prediction 0.407000891123624 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54914545 chr12:54914544 synonymous SNV . 0 20 hm7G_associated_SNPs_11535 0 0 1 0 2 NCKAP1L chr12:54914478 3'AG 54914478 Downstream 67bp 10911 chr12 54914544 54914544 1 + T C READ 54914545 + 54914525 54914565 41 AATCTGCCATGTTGCGTTATGCCATTGCTTTCCCCCTGATT AATCTGCCATGTTGCGTTACGCCATTGCTTTCCCCCTGATT < 41bp 0.703500445561812 0.487383201306844 NA NA prediction 0.407000891123624 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54914545 chr12:54914544 synonymous SNV . 0 20 hm7G_associated_SNPs_11535 0 0 1 0 2 NCKAP1L chr12:54914610 5'GT 54914610 Upstream 67bp 10912 chr1 26517794 26517794 1 + A G rs11247866 26517795 + 26517775 26517815 41 CAGGACGCCTGGGACATGCAGGAGTTCATCACTCACATGTA CAGGACGCCTGGGACATGCGGGAGTTCATCACTCACATGTA < 41bp 0.761683210190815 0.558187964670598 NA NA prediction 0.406990491040433 Functional Loss - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26517795 chr1:26517794 nonsynonymous SNV 0.647 1 20 hm7G_associated_SNPs_11536 0 0 0 0 1 CATSPER4 chr1:26517778 3'AG 26517778 Downstream 17bp 10913 chr6 24520766 24520766 1 + T G COAD 24520767 + 24520747 24520787 41 CATCTAAATTTAGGAACACTGGACAGGTGAGTCCTGGAGAG CATCTAAATTTAGGAACACGGGACAGGTGAGTCCTGGAGAG < 41bp 0.909097410310775 0.705604093683992 NA NA prediction 0.406986633253565 Functional Loss - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24520767 chr6:24520766 synonymous SNV . 0 20 hm7G_associated_SNPs_11537 0 0 0 0 1 ALDH5A1 chr6:24520772 5'GT 24520772 Upstream 7bp 10914 chr4 43032413 43032413 1 + A G LIHC 43032414 + 43032394 43032434 41 ATGAGTGTCCCTCTTGTGGAGGCTTTGGCTTTCTTCCATGC ATGAGTGTCCCTCTTGTGGGGGCTTTGGCTTTCTTCCATGC < 41bp 0.710776544795684 0.507288766753355 NA NA prediction 0.406975556084659 Functional Loss - GRXCR1 ENSG00000215203 CDS Human protein_coding chr4:43032414 chr4:43032413 synonymous SNV . 0 20 hm7G_associated_SNPs_11538 0 0 0 0 1 GRXCR1 chr4:43032378 3'AG 43032378 Downstream 36bp 10915 chr19 22785415 22785415 1 + T G LUAD 22785416 + 22785396 22785436 41 TGGCTCCAGAGCTGCTTTATGCAGCTGATGCAGGAAAAGGT TGGCTCCAGAGCTGCTTTAGGCAGCTGATGCAGGAAAAGGT < 41bp 0.884607277337018 0.681134588771622 NA NA prediction 0.406945377130792 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785416 chr19:22785415 . . 0 20 hm7G_associated_SNPs_11540 0 0 0 3 2 GOLGA2P9 chr19:22785405 3'AG 22785405 Downstream 11bp 10916 chr19 22785415 22785415 1 + T G LUAD 22785416 + 22785396 22785436 41 TGGCTCCAGAGCTGCTTTATGCAGCTGATGCAGGAAAAGGT TGGCTCCAGAGCTGCTTTAGGCAGCTGATGCAGGAAAAGGT < 41bp 0.884607277337018 0.681134588771622 NA NA prediction 0.406945377130792 Functional Loss - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785416 chr19:22785415 . . 0 20 hm7G_associated_SNPs_11540 0 0 0 3 2 GOLGA2P9 chr19:22785507 5'GT 22785507 Upstream 93bp 10917 chr2 48678188 48678188 1 + T G SKCM 48678189 + 48678169 48678209 41 TGAAAAAAGGTGTTGTGGATGAACAAGCAAATTCTGCAGCT TGAAAAAAGGTGTTGTGGAGGAACAAGCAAATTCTGCAGCT < 41bp 0.823565667462944 0.620104373748967 NA NA prediction 0.406922587427955 Functional Loss - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48678189 chr2:48678188 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_11541 0 0 1 0 2 PPP1R21 chr2:48678147 3'AG 48678147 Downstream 42bp 10918 chr2 48678188 48678188 1 + T G SKCM 48678189 + 48678169 48678209 41 TGAAAAAAGGTGTTGTGGATGAACAAGCAAATTCTGCAGCT TGAAAAAAGGTGTTGTGGAGGAACAAGCAAATTCTGCAGCT < 41bp 0.823565667462944 0.620104373748967 NA NA prediction 0.406922587427955 Functional Loss - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48678189 chr2:48678188 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_11541 0 0 1 0 2 PPP1R21 chr2:48678215 5'GT 48678215 Upstream 28bp 10919 chr19 55672470 55672470 1 - T C rs2365725 55672469 - 55672449 55672489 41 GGCATCGAAGCGGACGACGAGAGCCTCCTGCGGACGAGCAA GGCATCGAAGCGGACGACGGGAGCCTCCTGCGGACGAGCAA < 41bp 0.760706375727949 0.557247503331984 NA NA prediction 0.406917744791929 Functional Loss - DNAAF3 ENSG00000167646 CDS Human protein_coding chr19:55672469 chr19:55672470 nonsynonymous SNV 0.329 1 20 hm7G_associated_SNPs_11543 6 0 0 0 1 DNAAF3 chr19:55672433 5'GT 55672433 Upstream 38bp 10920 chr22 42418320 42418320 1 + T G GBM 42418321 + 42418301 42418341 41 TGGGAATTTATGTAATTACTGGGGAAGGGAATATGTGCACT TGGGAATTTATGTAATTACGGGGGAAGGGAATATGTGCACT < 41bp 0.901997266878703 0.698543050046159 NA NA prediction 0.406908433665088 Functional Loss - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42418321 chr22:42418320 synonymous SNV . 0 20 hm7G_associated_SNPs_11544 0 0 0 2 2 WBP2NL chr22:42418253 3'AG 42418253 Downstream 68bp 10921 chr22 42418320 42418320 1 + T G GBM 42418321 + 42418301 42418341 41 TGGGAATTTATGTAATTACTGGGGAAGGGAATATGTGCACT TGGGAATTTATGTAATTACGGGGGAAGGGAATATGTGCACT < 41bp 0.901997266878703 0.698543050046159 NA NA prediction 0.406908433665088 Functional Loss - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42418321 chr22:42418320 synonymous SNV . 0 20 hm7G_associated_SNPs_11544 0 0 0 2 2 WBP2NL chr22:42418360 5'GT 42418360 Upstream 41bp 10922 chr14 71134368 71134368 1 + A G LIHC 71134369 + 71134349 71134389 41 AAGGAAGGGGAGAACTTCAAGGCCCTTTACCGGTCTGGTGT AAGGAAGGGGAGAACTTCAGGGCCCTTTACCGGTCTGGTGT < 41bp 0.725607406158872 0.522162252113644 NA NA prediction 0.406890308090457 Functional Loss - TTC9 ENSG00000133985 CDS Human protein_coding chr14:71134369 chr14:71134368 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_11547 0 0 0 0 2 TTC9 chr14:71134281 3'AG 71134281 Downstream 88bp 10923 chr14 71134368 71134368 1 + A G LIHC 71134369 + 71134349 71134389 41 AAGGAAGGGGAGAACTTCAAGGCCCTTTACCGGTCTGGTGT AAGGAAGGGGAGAACTTCAGGGCCCTTTACCGGTCTGGTGT < 41bp 0.725607406158872 0.522162252113644 NA NA prediction 0.406890308090457 Functional Loss - TTC9 ENSG00000133985 CDS Human protein_coding chr14:71134369 chr14:71134368 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_11547 0 0 0 0 2 TTC9 chr14:71134463 5'GT 71134463 Upstream 96bp 10924 chr3 196534718 196534718 1 + T C LIHC 196534719 + 196534699 196534739 41 ATTCACATGTTGATGGTGCTGCCAAGTCTTTAGACAAACAG ATTCACATGTTGATGGTGCCGCCAAGTCTTTAGACAAACAG < 41bp 0.703442883939769 0.486865142999797 NA NA prediction 0.406885767879538 Functional Loss - PAK2 ENSG00000180370 CDS Human protein_coding chr3:196534719 chr3:196534718 synonymous SNV . 0 20 hm7G_associated_SNPs_11548 0 0 1 0 2 PAK2 chr3:196534653 3'AG 196534653 Downstream 66bp 10925 chr3 196534718 196534718 1 + T C LIHC 196534719 + 196534699 196534739 41 ATTCACATGTTGATGGTGCTGCCAAGTCTTTAGACAAACAG ATTCACATGTTGATGGTGCCGCCAAGTCTTTAGACAAACAG < 41bp 0.703442883939769 0.486865142999797 NA NA prediction 0.406885767879538 Functional Loss - PAK2 ENSG00000180370 CDS Human protein_coding chr3:196534719 chr3:196534718 synonymous SNV . 0 20 hm7G_associated_SNPs_11548 0 0 1 0 2 PAK2 chr3:196534785 5'GT 196534785 Upstream 68bp 10926 chr7 99786548 99786548 1 + T C LUAD 99786549 + 99786529 99786569 41 GCCAGTACAGCCTCCTCTATGATGGCTTCCCTATGGACGAC GCCAGTACAGCCTCCTCTACGATGGCTTCCCTATGGACGAC < 41bp 0.703436984555078 0.487026693259233 NA NA prediction 0.406873969110157 Functional Loss - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99786549 chr7:99786548 synonymous SNV . 0 20 hm7G_associated_SNPs_11550 0 0 0 0 1 STAG3 chr7:99786639 5'GT 99786639 Upstream 92bp 10927 chr11 11944363 11944363 1 + T G UCEC 11944364 + 11944344 11944384 41 GCAACGATTTCTCCAATGATGATGGTGTTGATGAAGGAATC GCAACGATTTCTCCAATGAGGATGGTGTTGATGAAGGAATC < 41bp 0.703432719576899 0.370212817044493 NA NA prediction 0.406865439153798 Functional Loss - USP47 ENSG00000170242 CDS Human protein_coding chr11:11944364 chr11:11944363 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_11551 0 0 1 0 2 USP47 chr11:11944271 3'AG 11944271 Downstream 93bp 10928 chr11 11944363 11944363 1 + T G UCEC 11944364 + 11944344 11944384 41 GCAACGATTTCTCCAATGATGATGGTGTTGATGAAGGAATC GCAACGATTTCTCCAATGAGGATGGTGTTGATGAAGGAATC < 41bp 0.703432719576899 0.370212817044493 NA NA prediction 0.406865439153798 Functional Loss - USP47 ENSG00000170242 CDS Human protein_coding chr11:11944364 chr11:11944363 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_11551 0 0 1 0 2 USP47 chr11:11944438 5'GT 11944438 Upstream 76bp 10929 chr7 106786905 106786905 1 + T G GBM 106786906 + 106786886 106786926 41 CCTGGTGCTCTGTGGGGTTTGGTGAGTAAAATACTTATTTG CCTGGTGCTCTGTGGGGTTGGGTGAGTAAAATACTTATTTG < 41bp 0.703429894070031 0.396417075910372 NA NA prediction 0.406859788140061 Functional Loss - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106786906 chr7:106786905 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11552 0 0 1 0 1 PRKAR2B chr7:106786906 5'GT 106786906 Upstream 2bp 10930 chr3 52505842 52505842 1 + T C UCEC 52505843 + 52505823 52505863 41 CTTGCAGGAGAACAGCTCCTGGGGGCCGGCGAGGTCTTTGC CTTGCAGGAGAACAGCTCCCGGGGGCCGGCGAGGTCTTTGC < 41bp 0.703429832488173 0.48883604458524 NA NA prediction 0.406859664976345 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52505843 chr3:52505842 nonsynonymous SNV 0.952 4 20 hm7G_associated_SNPs_11553 0 0 1 0 1 NISCH chr3:52505830 3'AG 52505830 Downstream 13bp 10931 chr14 57858426 57858426 1 + T C UCEC 57858427 + 57858407 57858447 41 TAGATATTTTATCCACAACTGGCCACAGCTGTGCTTCTTGG TAGATATTTTATCCACAACCGGCCACAGCTGTGCTTCTTGG < 41bp 0.709822076643984 0.506397987015373 NA NA prediction 0.40684817925722 Functional Loss - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57858427 chr14:57858426 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11555 0 0 1 0 1 NAA30 chr14:57858446 5'GT 57858446 Upstream 21bp 10932 chr11 7335093 7335093 1 + T C LUSC 7335094 + 7335074 7335114 41 CATGACTTAATCGGCCAAGTGGTGGTGGATCACTTCCTAGA CATGACTTAATCGGCCAAGCGGTGGTGGATCACTTCCTAGA < 41bp 0.729861736658192 0.526442844228939 NA NA prediction 0.406837784858506 Functional Loss - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7335094 chr11:7335093 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11556 0 0 1 1 1 SYT9 chr11:7335172 5'GT 7335172 Upstream 80bp 10933 chr12 7285650 7285650 1 + A G UCEC 7285651 + 7285631 7285671 41 AAGCCATGGATTGAGGCAGAGTACCAGGGCATCGTCATGGA AAGCCATGGATTGAGGCAGGGTACCAGGGCATCGTCATGGA < 41bp 0.703412808052626 0.497010447899934 NA NA prediction 0.406825616105251 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7285651 chr12:7285650 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_11557 0 0 1 0 2 CLSTN3 chr12:7285620 3'AG 7285620 Downstream 31bp 10934 chr12 7285650 7285650 1 + A G UCEC 7285651 + 7285631 7285671 41 AAGCCATGGATTGAGGCAGAGTACCAGGGCATCGTCATGGA AAGCCATGGATTGAGGCAGGGTACCAGGGCATCGTCATGGA < 41bp 0.703412808052626 0.497010447899934 NA NA prediction 0.406825616105251 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7285651 chr12:7285650 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_11557 0 0 1 0 2 CLSTN3 chr12:7285742 5'GT 7285742 Upstream 93bp 10935 chr1 160720095 160720095 1 + T C HNSC 160720096 + 160720076 160720116 41 TCCACCCATTCTCTGAAGGTGCTGCTGATGACCCAGATTCC TCCACCCATTCTCTGAAGGCGCTGCTGATGACCCAGATTCC < 41bp 0.714894590418656 0.511488200324636 NA NA prediction 0.406812780188041 Functional Loss - SLAMF7 ENSG00000026751 CDS Human protein_coding chr1:160720096 chr1:160720095 synonymous SNV . 0 20 hm7G_associated_SNPs_11559 0 0 0 0 1 SLAMF7 chr1:160720094 3'AG 160720094 Downstream 2bp 10936 chr19 39395894 39395894 1 + T G BLCA 39395895 + 39395875 39395915 41 ACATCCACGGTGGAGAAGCTGTACGCAGCAGGCGCCGGGCT ACATCCACGGTGGAGAAGCGGTACGCAGCAGGCGCCGGGCT < 41bp 0.907701050734972 0.70430556606769 NA NA prediction 0.406790969334564 Functional Loss - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395895 chr19:39395894 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_11562 0 0 1 0 1 NFKBIB chr19:39395842 3'AG 39395842 Downstream 53bp 10937 chr5 1219124 1219124 1 + T C UCEC 1219125 + 1219105 1219145 41 TTCATTATGCTCTTCTGCCTGGGGCTGTCATCTATGTTTGG TTCATTATGCTCTTCTGCCCGGGGCTGTCATCTATGTTTGG < 41bp 0.740003833763986 0.53660836743759 NA NA prediction 0.406790932652793 Functional Loss - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1219125 chr5:1219124 nonsynonymous SNV 0.954 4 20 hm7G_associated_SNPs_11563 0 0 0 0 1 SLC6A19 chr5:1219222 5'GT 1219222 Upstream 99bp 10938 chr19 5751803 5751803 1 + T C rs139062634 5751804 + 5751784 5751824 41 AATATCCAGGCGCTTCTCATGGACCCTGAACTCCACGTTGG AATATCCAGGCGCTTCTCACGGACCCTGAACTCCACGTTGG < 41bp 0.733558436977779 0.530179147989062 NA NA prediction 0.406758577977432 Functional Loss - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5751804 chr19:5751803 nonsynonymous SNV 0.368 3 20 hm7G_associated_SNPs_11565 0 0 0 0 1 CATSPERD chr19:5751834 5'GT 5751834 Upstream 32bp 10939 chr12 6973218 6973218 1 + T C OV 6973219 + 6973199 6973239 41 CCTTCACATCCACAGATTTTGCAAACCCCCTCATCCTGCCT CCTTCACATCCACAGATTTCGCAAACCCCCTCATCCTGCCT < 41bp 0.741866589082872 0.538491064014382 NA NA prediction 0.406751050136981 Functional Loss - USP5 ENSG00000111667 CDS Human protein_coding chr12:6973219 chr12:6973218 synonymous SNV . 0 20 hm7G_associated_SNPs_11566 0 0 1 0 1 USP5 chr12:6973214 3'AG 6973214 Downstream 5bp 10940 chr3 14175262 14175262 1 + T C rs2340917 14175263 + 14175243 14175283 41 ATGGCAGTGGAGTCATTCATGGCAACAGCCCCCTTTGTCCA ATGGCAGTGGAGTCATTCACGGCAACAGCCCCCTTTGTCCA < 41bp 0.75185171012842 0.54848015407727 NA NA prediction 0.4067431121023 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14175263 chr3:14175262 nonsynonymous SNV 0.297 0 20 hm7G_associated_SNPs_11567 3 0 1 0 2 TMEM43 chr3:14175239 3'AG 14175239 Downstream 24bp 10941 chr3 14175262 14175262 1 + T C rs2340917 14175263 + 14175243 14175283 41 ATGGCAGTGGAGTCATTCATGGCAACAGCCCCCTTTGTCCA ATGGCAGTGGAGTCATTCACGGCAACAGCCCCCTTTGTCCA < 41bp 0.75185171012842 0.54848015407727 NA NA prediction 0.4067431121023 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14175263 chr3:14175262 nonsynonymous SNV 0.297 0 20 hm7G_associated_SNPs_11567 3 0 1 0 2 TMEM43 chr3:14175309 5'GT 14175309 Upstream 48bp 10942 chr11 89880665 89880665 1 + T C COAD 89880666 + 89880646 89880686 41 GCCAACTATATATCGATTGTGGATGAACATGAAACTGAGGT GCCAACTATATATCGATTGCGGATGAACATGAAACTGAGGT < 41bp 0.721520124600607 0.518155115848659 NA NA prediction 0.406730017503895 Functional Loss - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89880666 chr11:89880665 nonsynonymous SNV 0.932 1 20 hm7G_associated_SNPs_11569 0 0 1 0 1 NAALAD2 chr11:89880684 5'GT 89880684 Upstream 20bp 10943 chr11 375666 375666 1 + T C UCEC 375667 + 375647 375687 41 GCCTTGAAGATGGACCACGTGGCGCACGTCCCCCAGTCTCC GCCTTGAAGATGGACCACGCGGCGCACGTCCCCCAGTCTCC < 41bp 0.721843493857639 0.518483847470852 NA NA prediction 0.406719292773575 Functional Loss - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:375667 chr11:375666 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_11570 0 0 1 0 1 B4GALNT4 chr11:375639 3'AG 375639 Downstream 28bp 10944 chr7 102996160 102996160 1 + T C PAAD 102996161 + 102996141 102996181 41 GTATTAAAGAATCTGACACTGGCCTGGCCCCACCAGCACTC GTATTAAAGAATCTGACACCGGCCTGGCCCCACCAGCACTC < 41bp 0.742439618388103 0.539087929902206 NA NA prediction 0.406703376971793 Functional Loss - PSMC2 ENSG00000161057 CDS Human protein_coding chr7:102996161 chr7:102996160 synonymous SNV . 0 20 hm7G_associated_SNPs_11573 0 0 1 0 2 PSMC2 chr7:102996141 3'AG 102996141 Downstream 20bp 10945 chr7 102996160 102996160 1 + T C PAAD 102996161 + 102996141 102996181 41 GTATTAAAGAATCTGACACTGGCCTGGCCCCACCAGCACTC GTATTAAAGAATCTGACACCGGCCTGGCCCCACCAGCACTC < 41bp 0.742439618388103 0.539087929902206 NA NA prediction 0.406703376971793 Functional Loss - PSMC2 ENSG00000161057 CDS Human protein_coding chr7:102996161 chr7:102996160 synonymous SNV . 0 20 hm7G_associated_SNPs_11573 0 0 1 0 2 PSMC2 chr7:102996240 5'GT 102996240 Upstream 81bp 10946 chr3 121973162 121973162 1 + T C SKCM 121973163 + 121973143 121973183 41 GGCTCTTTCCTATTCATTTTGGAGTAGCAGCTAAAGATCAA GGCTCTTTCCTATTCATTTCGGAGTAGCAGCTAAAGATCAA < 41bp 0.748795172346257 0.545454795832833 NA NA prediction 0.406680753026849 Functional Loss - CASR ENSG00000036828 CDS Human protein_coding chr3:121973163 chr3:121973162 synonymous SNV . 0 20 hm7G_associated_SNPs_11575 0 0 0 0 1 CASR chr3:121973221 5'GT 121973221 Upstream 60bp 10947 chr17 77073941 77073941 1 + T C rs56353542 77073942 + 77073922 77073962 41 TGATGGGCGGGTACCTGGATGACAGGTGAGGACCTGGCCTT TGATGGGCGGGTACCTGGACGACAGGTGAGGACCTGGCCTT < 41bp 0.716076213189968 0.512742244673865 NA NA prediction 0.406667937032205 Functional Loss - ENGASE ENSG00000167280 CDS Human protein_coding chr17:77073942 chr17:77073941 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_11576 0 0 1 0 1 ENGASE chr17:77073946 5'GT 77073946 Upstream 6bp 10948 chr19 15661546 15661546 1 + T C UCEC 15661547 + 15661527 15661567 41 CGCTCTCCACTGGCCTATGTGCCCTTCTCTGCAGGACCCAG CGCTCTCCACTGGCCTATGCGCCCTTCTCTGCAGGACCCAG < 41bp 0.703331574927174 0.494499540334863 NA NA prediction 0.406663149854349 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15661547 chr19:15661546 nonsynonymous SNV 0.074 2 20 hm7G_associated_SNPs_11577 0 0 0 0 2 CYP4F22 chr19:15661485 3'AG 15661485 Downstream 62bp 10949 chr19 15661546 15661546 1 + T C UCEC 15661547 + 15661527 15661567 41 CGCTCTCCACTGGCCTATGTGCCCTTCTCTGCAGGACCCAG CGCTCTCCACTGGCCTATGCGCCCTTCTCTGCAGGACCCAG < 41bp 0.703331574927174 0.494499540334863 NA NA prediction 0.406663149854349 Functional Loss - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15661547 chr19:15661546 nonsynonymous SNV 0.074 2 20 hm7G_associated_SNPs_11577 0 0 0 0 2 CYP4F22 chr19:15661567 5'GT 15661567 Upstream 22bp 10950 chr3 128982760 128982760 1 + A G GBM 128982761 + 128982741 128982781 41 ATTTAGGTGGTGGTTGTCCAGGCCATCAGTGCCCTGTGTCA ATTTAGGTGGTGGTTGTCCGGGCCATCAGTGCCCTGTGTCA < 41bp 0.73714817794188 0.533816681381045 NA NA prediction 0.406662993121669 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128982761 chr3:128982760 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11578 0 0 1 0 2 COPG1 chr3:128982747 3'AG 128982747 Downstream 14bp 10951 chr3 128982760 128982760 1 + A G GBM 128982761 + 128982741 128982781 41 ATTTAGGTGGTGGTTGTCCAGGCCATCAGTGCCCTGTGTCA ATTTAGGTGGTGGTTGTCCGGGCCATCAGTGCCCTGTGTCA < 41bp 0.73714817794188 0.533816681381045 NA NA prediction 0.406662993121669 Functional Loss - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128982761 chr3:128982760 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11578 0 0 1 0 2 COPG1 chr3:128982842 5'GT 128982842 Upstream 83bp 10952 chr6 18208394 18208394 1 + T C STAD 18208395 + 18208375 18208415 41 GATTATTCTGGAGATGAAGTGCAGGTTACCACTACAGATGG GATTATTCTGGAGATGAAGCGCAGGTTACCACTACAGATGG < 41bp 0.73752568577003 0.534195325930838 NA NA prediction 0.406660719678385 Functional Loss - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18208395 chr6:18208394 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_11579 0 0 0 0 2 KDM1B chr6:18208363 3'AG 18208363 Downstream 32bp 10953 chr6 18208394 18208394 1 + T C STAD 18208395 + 18208375 18208415 41 GATTATTCTGGAGATGAAGTGCAGGTTACCACTACAGATGG GATTATTCTGGAGATGAAGCGCAGGTTACCACTACAGATGG < 41bp 0.73752568577003 0.534195325930838 NA NA prediction 0.406660719678385 Functional Loss - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18208395 chr6:18208394 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_11579 0 0 0 0 2 KDM1B chr6:18208437 5'GT 18208437 Upstream 44bp 10954 chr4 48993552 48993552 1 + T C STAD 48993553 + 48993533 48993573 41 GTGTCTTCCTCACTGATAGTGCAAGCTGTGACTTGGTGGTC GTGTCTTCCTCACTGATAGCGCAAGCTGTGACTTGGTGGTC < 41bp 0.741270954911791 0.537953427554106 NA NA prediction 0.406635054715369 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48993553 chr4:48993552 nonsynonymous SNV 0.869 0 20 hm7G_associated_SNPs_11581 0 0 0 0 2 CWH43 chr4:48993471 3'AG 48993471 Downstream 82bp 10955 chr4 48993552 48993552 1 + T C STAD 48993553 + 48993533 48993573 41 GTGTCTTCCTCACTGATAGTGCAAGCTGTGACTTGGTGGTC GTGTCTTCCTCACTGATAGCGCAAGCTGTGACTTGGTGGTC < 41bp 0.741270954911791 0.537953427554106 NA NA prediction 0.406635054715369 Functional Loss - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48993553 chr4:48993552 nonsynonymous SNV 0.869 0 20 hm7G_associated_SNPs_11581 0 0 0 0 2 CWH43 chr4:48993591 5'GT 48993591 Upstream 40bp 10956 chr6 64421552 64421552 1 + T C OV 64421553 + 64421533 64421573 41 AACTGAAGCGACAGCACAGTGCCTGTGCTAGTACTAGTCAT AACTGAAGCGACAGCACAGCGCCTGTGCTAGTACTAGTCAT < 41bp 0.703647123776457 0.500332228277282 NA NA prediction 0.406629790998351 Functional Loss - PHF3 ENSG00000118482 CDS Human protein_coding chr6:64421553 chr6:64421552 synonymous SNV . 0 20 hm7G_associated_SNPs_11582 0 0 1 0 1 PHF3 chr6:64421482 3'AG 64421482 Downstream 71bp 10957 chrX 119500594 119500594 1 + T G LGG 119500595 + 119500575 119500615 41 CAGATCATGAGTGAATACCTGTGGGATCCAGAGAGAAGGAT CAGATCATGAGTGAATACCGGTGGGATCCAGAGAGAAGGAT < 41bp 0.900536022261464 0.697222612775868 NA NA prediction 0.40662681897119 Functional Loss - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119500595 chrX:119500594 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_11583 0 0 0 0 2 ATP1B4 chrX:119500632 5'GT 119500632 Upstream 39bp 10958 chrX 119500594 119500594 1 + T G LGG 119500595 + 119500575 119500615 41 CAGATCATGAGTGAATACCTGTGGGATCCAGAGAGAAGGAT CAGATCATGAGTGAATACCGGTGGGATCCAGAGAGAAGGAT < 41bp 0.900536022261464 0.697222612775868 NA NA prediction 0.40662681897119 Functional Loss - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119500595 chrX:119500594 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_11583 0 0 0 0 2 ATP1B4 chrX:119500644 5'GT 119500644 Upstream 51bp 10959 chr2 113955139 113955139 1 + A G UCEC 113955140 + 113955120 113955160 41 TGTGTTCTGTTCCTGGAACAGCGCCATGGGGCAAGCGTGGC TGTGTTCTGTTCCTGGAACGGCGCCATGGGGCAAGCGTGGC < 41bp 0.729919542944342 0.526608901070049 NA NA prediction 0.406621283748587 Functional Loss - PSD4 ENSG00000125637 splicing Human protein_coding chr2:113955140 chr2:113955139 . 0.264 0 20 hm7G_associated_SNPs_11584 0 0 1 0 1 PSD4 chr2:113955211 5'GT 113955211 Upstream 73bp 10960 chr17 51901220 51901220 1 - A G COAD 51901219 - 51901199 51901239 41 AACTGGTACACCAACTCGTTGGAGGCTTTGTCATCGAAGGC AACTGGTACACCAACTCGTCGGAGGCTTTGTCATCGAAGGC < 41bp 0.703303504345086 0.498007016438391 NA NA prediction 0.406607008690172 Functional Loss - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901219 chr17:51901220 nonsynonymous SNV 0.839 4 20 hm7G_associated_SNPs_11585 0 0 0 0 1 KIF2B chr17:51901196 5'GT 51901196 Upstream 25bp 10961 chr20 62848515 62848515 1 + A G OV 62848516 + 62848496 62848536 41 AGGGCCAACTTGGCCAAGGAGCTGGAGAAGTTCTCCAAGGT AGGGCCAACTTGGCCAAGGGGCTGGAGAAGTTCTCCAAGGT < 41bp 0.746587641907832 0.543284609159585 NA NA prediction 0.406606065496493 Functional Loss - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62848516 chr20:62848515 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11586 0 0 0 0 1 MYT1 chr20:62848420 3'AG 62848420 Downstream 96bp 10962 chr1 205499777 205499777 1 + A G rs114816536 205499778 + 205499758 205499798 41 GCCTCCATCTTCTCCCTGAAGGAGATCCAGCTCCAGAAGGA GCCTCCATCTTCTCCCTGAGGGAGATCCAGCTCCAGAAGGA < 41bp 0.703301642176255 0.491352333448098 NA NA prediction 0.406603284352511 Functional Loss - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205499778 chr1:205499777 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_11587 0 0 1 0 2 CDK18 chr1:205499756 3'AG 205499756 Downstream 22bp 10963 chr1 205499777 205499777 1 + A G rs114816536 205499778 + 205499758 205499798 41 GCCTCCATCTTCTCCCTGAAGGAGATCCAGCTCCAGAAGGA GCCTCCATCTTCTCCCTGAGGGAGATCCAGCTCCAGAAGGA < 41bp 0.703301642176255 0.491352333448098 NA NA prediction 0.406603284352511 Functional Loss - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205499778 chr1:205499777 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_11587 0 0 1 0 2 CDK18 chr1:205499833 5'GT 205499833 Upstream 57bp 10964 chr22 50355011 50355011 1 + A G TGCT 50355012 + 50354992 50355032 41 GCGGGTGACCGAGTGGGGCAGCCTGGTAAGTTGGGGCACGG GCGGGTGACCGAGTGGGGCGGCCTGGTAAGTTGGGGCACGG < 41bp 0.748753444380963 0.545472990496102 NA NA prediction 0.406560907769722 Functional Loss - PIM3 ENSG00000198355 CDS Human protein_coding chr22:50355012 chr22:50355011 nonsynonymous SNV 0.924 0 20 hm7G_associated_SNPs_11589 0 0 1 0 2 PIM3 chr22:50354966 3'AG 50354966 Downstream 46bp 10965 chr22 50355011 50355011 1 + A G TGCT 50355012 + 50354992 50355032 41 GCGGGTGACCGAGTGGGGCAGCCTGGTAAGTTGGGGCACGG GCGGGTGACCGAGTGGGGCGGCCTGGTAAGTTGGGGCACGG < 41bp 0.748753444380963 0.545472990496102 NA NA prediction 0.406560907769722 Functional Loss - PIM3 ENSG00000198355 CDS Human protein_coding chr22:50355012 chr22:50355011 nonsynonymous SNV 0.924 0 20 hm7G_associated_SNPs_11589 0 0 1 0 2 PIM3 chr22:50355016 5'GT 50355016 Upstream 6bp 10966 chr12 113379377 113379377 1 + A G UCEC 113379378 + 113379358 113379398 41 TATTTTTCTTTGCCCAGGGAGGCTCCTCGGGCCGGGGCACA TATTTTTCTTTGCCCAGGGGGGCTCCTCGGGCCGGGGCACA < 41bp 0.752631227356297 0.549352585520953 NA NA prediction 0.406557283670687 Functional Loss - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379378 chr12:113379377 synonymous SNV . 0 20 hm7G_associated_SNPs_11590 0 0 0 0 1 OAS3 chr12:113379375 3'AG 113379375 Downstream 3bp 10967 chr3 38149131 38149131 1 + A G GBM 38149132 + 38149112 38149152 41 GTGTACCTACAGAGCAGCCAGGTGGAGGTTAGAAATCTCTA GTGTACCTACAGAGCAGCCGGGTGGAGGTTAGAAATCTCTA < 41bp 0.751138685508246 0.5478615575411 NA NA prediction 0.406554255934293 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38149132 chr3:38149131 nonsynonymous SNV 0.926 0 20 hm7G_associated_SNPs_11591 0 0 0 0 2 DLEC1 chr3:38149075 3'AG 38149075 Downstream 57bp 10968 chr3 38149131 38149131 1 + A G GBM 38149132 + 38149112 38149152 41 GTGTACCTACAGAGCAGCCAGGTGGAGGTTAGAAATCTCTA GTGTACCTACAGAGCAGCCGGGTGGAGGTTAGAAATCTCTA < 41bp 0.751138685508246 0.5478615575411 NA NA prediction 0.406554255934293 Functional Loss - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38149132 chr3:38149131 nonsynonymous SNV 0.926 0 20 hm7G_associated_SNPs_11591 0 0 0 0 2 DLEC1 chr3:38149228 5'GT 38149228 Upstream 98bp 10969 chr2 157406154 157406154 1 + T C HNSC 157406155 + 157406135 157406175 41 CACGGATGAACCTTGCCATTGCTCTGACTGCTGCCAGGTAT CACGGATGAACCTTGCCATCGCTCTGACTGCTGCCAGGTAT < 41bp 0.747084943250844 0.543820855208012 NA NA prediction 0.406528176085664 Functional Loss - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157406155 chr2:157406154 synonymous SNV . 0 20 hm7G_associated_SNPs_11594 0 0 1 0 1 GPD2 chr2:157406120 3'AG 157406120 Downstream 35bp 10970 chr1 11586709 11586709 1 + T C UCEC 11586710 + 11586690 11586730 41 TGTCAACCCACTGCTTAGGTGTATAGAGCGCCTTTTGGTAA TGTCAACCCACTGCTTAGGCGTATAGAGCGCCTTTTGGTAA < 41bp 0.703264033192828 0.497628693812325 NA NA prediction 0.406528066385656 Functional Loss - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11586710 chr1:11586709 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11595 0 0 0 0 1 DISP3 chr1:11586708 3'AG 11586708 Downstream 2bp 10971 chr11 71706524 71706524 1 + T G LIHC 71706525 + 71706505 71706545 41 GTTCTGCATCCGTGGCTGGTGCATCGTGGGAAAGAAGCAAA GTTCTGCATCCGTGGCTGGGGCATCGTGGGAAAGAAGCAAA < 41bp 0.915615184267175 0.712354178011844 NA NA prediction 0.406522012510664 Functional Loss - RNF121 ENSG00000137522 CDS Human protein_coding chr11:71706525 chr11:71706524 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11596 0 0 1 0 3 RNF121 chr11:71706486 3'AG 71706486 Downstream 39bp 10972 chr11 71706524 71706524 1 + T G LIHC 71706525 + 71706505 71706545 41 GTTCTGCATCCGTGGCTGGTGCATCGTGGGAAAGAAGCAAA GTTCTGCATCCGTGGCTGGGGCATCGTGGGAAAGAAGCAAA < 41bp 0.915615184267175 0.712354178011844 NA NA prediction 0.406522012510664 Functional Loss - RNF121 ENSG00000137522 CDS Human protein_coding chr11:71706525 chr11:71706524 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11596 0 0 1 0 3 RNF121 chr11:71706496 3'AG 71706496 Downstream 29bp 10973 chr11 71706524 71706524 1 + T G LIHC 71706525 + 71706505 71706545 41 GTTCTGCATCCGTGGCTGGTGCATCGTGGGAAAGAAGCAAA GTTCTGCATCCGTGGCTGGGGCATCGTGGGAAAGAAGCAAA < 41bp 0.915615184267175 0.712354178011844 NA NA prediction 0.406522012510664 Functional Loss - RNF121 ENSG00000137522 CDS Human protein_coding chr11:71706525 chr11:71706524 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11596 0 0 1 0 3 RNF121 chr11:71706597 5'GT 71706597 Upstream 74bp 10974 chr8 17407901 17407901 1 + T C UCEC 17407902 + 17407882 17407922 41 GTTGGCTGGTGCTGCAACTTGCTTTTATGCCTTTGTGGGAT GTTGGCTGGTGCTGCAACTCGCTTTTATGCCTTTGTGGGAT < 41bp 0.737341680614897 0.534082596194467 NA NA prediction 0.406518168840859 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17407902 chr8:17407901 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_11597 0 0 1 0 2 SLC7A2 chr8:17407810 3'AG 17407810 Downstream 92bp 10975 chr8 17407901 17407901 1 + T C UCEC 17407902 + 17407882 17407922 41 GTTGGCTGGTGCTGCAACTTGCTTTTATGCCTTTGTGGGAT GTTGGCTGGTGCTGCAACTCGCTTTTATGCCTTTGTGGGAT < 41bp 0.737341680614897 0.534082596194467 NA NA prediction 0.406518168840859 Functional Loss - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17407902 chr8:17407901 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_11597 0 0 1 0 2 SLC7A2 chr8:17407943 5'GT 17407943 Upstream 43bp 10976 chr16 67178228 67178228 1 + T C UCEC 67178229 + 67178209 67178249 41 GATGCGAATACACACAAAGTGAAGAAGTTTGTTCTACACAC GATGCGAATACACACAAAGCGAAGAAGTTTGTTCTACACAC < 41bp 0.73898556192875 0.535732158387063 NA NA prediction 0.406506807083373 Functional Loss - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67178229 chr16:67178228 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11598 0 0 1 0 2 C16orf70 chr16:67178197 3'AG 67178197 Downstream 32bp 10977 chr16 67178228 67178228 1 + T C UCEC 67178229 + 67178209 67178249 41 GATGCGAATACACACAAAGTGAAGAAGTTTGTTCTACACAC GATGCGAATACACACAAAGCGAAGAAGTTTGTTCTACACAC < 41bp 0.73898556192875 0.535732158387063 NA NA prediction 0.406506807083373 Functional Loss - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67178229 chr16:67178228 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11598 0 0 1 0 2 C16orf70 chr16:67178279 5'GT 67178279 Upstream 52bp 10978 chr11 119058019 119058019 1 + T G LUSC 119058020 + 119058000 119058040 41 AGCAGCCCTCGGGTGTTGCTGACAGTATTGGCACGGCATGC AGCAGCCCTCGGGTGTTGCGGACAGTATTGGCACGGCATGC < 41bp 0.703248297028691 0.35314493863721 NA NA prediction 0.406496594057383 Functional Loss - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119058020 chr11:119058019 nonsynonymous SNV 0.784 3 20 hm7G_associated_SNPs_11599 0 0 0 0 1 PDZD3 chr11:119057979 3'AG 119057979 Downstream 41bp 10979 chr19 10794413 10794413 1 + A G rs139961882 10794414 + 10794394 10794434 41 GCGGGAGCATCCGGGGACGAGGGCGCGGGCGAGGATTTGGT GCGGGAGCATCCGGGGACGGGGGCGCGGGCGAGGATTTGGT < 41bp 0.761781394318092 0.558533538339927 NA NA prediction 0.406495711956329 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10794414 chr19:10794413 synonymous SNV . 0 20 hm7G_associated_SNPs_11600 0 0 1 0 1 ILF3 chr19:10794465 5'GT 10794465 Upstream 53bp 10980 chr11 111864276 111864276 1 + A G CESC 111864277 + 111864257 111864297 41 ACCAGGCCAAGTTAGAAGAAGCACTCCGGAAACTCTCTGAT ACCAGGCCAAGTTAGAAGAGGCACTCCGGAAACTCTCTGAT < 41bp 0.72391811640619 0.520677671028706 NA NA prediction 0.406480890754968 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111864277 chr11:111864276 synonymous SNV . 0 20 hm7G_associated_SNPs_11602 0 0 0 0 2 DIXDC1 chr11:111864220 3'AG 111864220 Downstream 57bp 10981 chr11 111864276 111864276 1 + A G CESC 111864277 + 111864257 111864297 41 ACCAGGCCAAGTTAGAAGAAGCACTCCGGAAACTCTCTGAT ACCAGGCCAAGTTAGAAGAGGCACTCCGGAAACTCTCTGAT < 41bp 0.72391811640619 0.520677671028706 NA NA prediction 0.406480890754968 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111864277 chr11:111864276 synonymous SNV . 0 20 hm7G_associated_SNPs_11602 0 0 0 0 2 DIXDC1 chr11:111864312 5'GT 111864312 Upstream 37bp 10982 chr20 55909085 55909085 1 + T G rs16980893 55909086 + 55909066 55909106 41 AACTCTTTGGTAACCAGACTGTCGTCGACAATATTATCAAT AACTCTTTGGTAACCAGACGGTCGTCGACAATATTATCAAT < 41bp 0.703231855463191 0.391233725830762 NA NA prediction 0.406463710926382 Functional Loss - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55909086 chr20:55909085 synonymous SNV . 0 20 hm7G_associated_SNPs_11603 0 0 0 0 2 SPO11 chr20:55909043 3'AG 55909043 Downstream 43bp 10983 chr20 55909085 55909085 1 + T G rs16980893 55909086 + 55909066 55909106 41 AACTCTTTGGTAACCAGACTGTCGTCGACAATATTATCAAT AACTCTTTGGTAACCAGACGGTCGTCGACAATATTATCAAT < 41bp 0.703231855463191 0.391233725830762 NA NA prediction 0.406463710926382 Functional Loss - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55909086 chr20:55909085 synonymous SNV . 0 20 hm7G_associated_SNPs_11603 0 0 0 0 2 SPO11 chr20:55909151 5'GT 55909151 Upstream 67bp 10984 chr2 27445512 27445512 1 + T C rs531741869 27445513 + 27445493 27445533 41 CTGTGGTACCCTGGGACCATGCACTAGACAGCCAAGGTGAG CTGTGGTACCCTGGGACCACGCACTAGACAGCCAAGGTGAG < 41bp 0.713981291547887 0.51074950869022 NA NA prediction 0.406463565715334 Functional Loss - CAD ENSG00000084774 CDS Human protein_coding chr2:27445513 chr2:27445512 synonymous SNV . 0 20 hm7G_associated_SNPs_11604 0 0 1 0 1 CAD chr2:27445528 5'GT 27445528 Upstream 17bp 10985 chr19 42855819 42855819 1 + T C COAD 42855820 + 42855800 42855840 41 TGTACACTCGGAGCCACGGTGCCGGAGCTGCGATGGCTTCC TGTACACTCGGAGCCACGGCGCCGGAGCTGCGATGGCTTCC < 41bp 0.715302046563821 0.51207544143508 NA NA prediction 0.406453210257481 Functional Loss - MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855820 chr19:42855819 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_11606 0 0 0 0 1 MEGF8 chr19:42855913 5'GT 42855913 Upstream 95bp 10986 chr19 50339015 50339015 1 + A G LIHC 50339016 + 50338996 50339036 41 CCACCGCAGCCCCAGCCTCAGGGTACCGTAGGGGCCTCTGG CCACCGCAGCCCCAGCCTCGGGGTACCGTAGGGGCCTCTGG < 41bp 0.776360700417432 0.573138026701807 NA NA prediction 0.406445347431249 Functional Loss - MED25 ENSG00000104973 CDS Human protein_coding chr19:50339016 chr19:50339015 nonsynonymous SNV 0.831 0 20 hm7G_associated_SNPs_11608 0 0 0 0 1 MED25 chr19:50338984 3'AG 50338984 Downstream 32bp 10987 chr17 62533807 62533807 1 + T C HNSC 62533808 + 62533788 62533828 41 TGATAACACAGAATGATGATGATGTTTTCTTCCGGGAACTG TGATAACACAGAATGATGACGATGTTTTCTTCCGGGAACTG < 41bp 0.735648257559469 0.5324298472992 NA NA prediction 0.406436820520537 Functional Loss - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62533808 chr17:62533807 synonymous SNV . 0 20 hm7G_associated_SNPs_11609 0 0 1 0 1 CEP95 chr17:62533721 3'AG 62533721 Downstream 87bp 10988 chr11 36057791 36057791 1 + A G LIHC 36057792 + 36057772 36057812 41 TTCGACAAGAGTGATGAGAAGGAGTGCCGTGAGTGGCCTGG TTCGACAAGAGTGATGAGAGGGAGTGCCGTGAGTGGCCTGG < 41bp 0.738611341542022 0.535393958596546 NA NA prediction 0.406434765890952 Functional Loss - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36057792 chr11:36057791 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_11610 0 0 1 0 1 LDLRAD3 chr11:36057799 5'GT 36057799 Upstream 9bp 10989 chr16 85690012 85690012 1 + T C LUAD 85690013 + 85689993 85690033 41 GCGAGCGCGAGCGTGAGCGTGAGGCTGACCGCGAGCGGGAG GCGAGCGCGAGCGTGAGCGCGAGGCTGACCGCGAGCGGGAG < 41bp 0.733147526782049 0.529939618728105 NA NA prediction 0.406415816107888 Functional Loss - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85690013 chr16:85690012 synonymous SNV . 0 20 hm7G_associated_SNPs_11611 0 0 1 0 1 GSE1 chr16:85689949 3'AG 85689949 Downstream 64bp 10990 chr12 49723963 49723963 1 + A G rs4243545 49723964 + 49723944 49723984 41 AACAGCTGTTGAGACAGGAAGTAGAGGGGCTGGTAGGGGGC AACAGCTGTTGAGACAGGAGGTAGAGGGGCTGGTAGGGGGC < 41bp 0.752601125696961 0.549406992570987 NA NA prediction 0.406388266251949 Functional Loss - TROAP ENSG00000135451 CDS Human protein_coding chr12:49723964 chr12:49723963 synonymous SNV . 0 20 hm7G_associated_SNPs_11614 0 0 1 0 1 TROAP chr12:49723928 3'AG 49723928 Downstream 36bp 10991 chr12 69119562 69119562 1 + T C OV 69119563 + 69119543 69119583 41 GTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAAGAT GTTCAAAAGTTTCTTATCCCGGGAGACATTGATGGTAAGAT < 41bp 0.714118194321606 0.510947715011969 NA NA prediction 0.406340958619274 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119563 chr12:69119562 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11618 0 0 1 0 2 NUP107 chr12:69119507 3'AG 69119507 Downstream 56bp 10992 chr12 69119562 69119562 1 + T C OV 69119563 + 69119543 69119583 41 GTTCAAAAGTTTCTTATCCTGGGAGACATTGATGGTAAGAT GTTCAAAAGTTTCTTATCCCGGGAGACATTGATGGTAAGAT < 41bp 0.714118194321606 0.510947715011969 NA NA prediction 0.406340958619274 Functional Loss - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69119563 chr12:69119562 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11618 0 0 1 0 2 NUP107 chr12:69119576 5'GT 69119576 Upstream 15bp 10993 chr4 17835999 17835999 1 + T C LIHC 17836000 + 17835980 17836020 41 AACTGATGACGTTCGGGATTGAACCATTTAAAACTAAAAAA AACTGATGACGTTCGGGATCGAACCATTTAAAACTAAAAAA < 41bp 0.703169856077757 0.497036647812355 NA NA prediction 0.406339712155514 Functional Loss - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17836000 chr4:17835999 synonymous SNV . 0 20 hm7G_associated_SNPs_11619 0 0 1 0 1 NCAPG chr4:17835922 3'AG 17835922 Downstream 78bp 10994 chr19 39948351 39948351 1 + A G UCEC 39948352 + 39948332 39948372 41 GAGGACGAGGACCAGTGGGAGGATGGAGCAGAGGACATTCT GAGGACGAGGACCAGTGGGGGGATGGAGCAGAGGACATTCT < 41bp 0.731801312316756 0.528637032979632 NA NA prediction 0.406328558674248 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948352 chr19:39948351 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_11621 0 0 1 0 2 SUPT5H chr19:39948315 3'AG 39948315 Downstream 37bp 10995 chr19 39948351 39948351 1 + A G UCEC 39948352 + 39948332 39948372 41 GAGGACGAGGACCAGTGGGAGGATGGAGCAGAGGACATTCT GAGGACGAGGACCAGTGGGGGGATGGAGCAGAGGACATTCT < 41bp 0.731801312316756 0.528637032979632 NA NA prediction 0.406328558674248 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39948352 chr19:39948351 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_11621 0 0 1 0 2 SUPT5H chr19:39948380 5'GT 39948380 Upstream 30bp 10996 chr11 73620553 73620553 1 + T C rs138468906 73620554 + 73620534 73620574 41 CAGCCTGCTTGGGAGTCCTTGCAGATTGTGGTTCTTCTATC CAGCCTGCTTGGGAGTCCTCGCAGATTGTGGTTCTTCTATC < 41bp 0.761751064496248 0.558599063134131 NA NA prediction 0.406304002724234 Functional Loss - PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73620554 chr11:73620553 synonymous SNV . 0 20 hm7G_associated_SNPs_11622 0 0 1 0 1 PAAF1 chr11:73620638 5'GT 73620638 Upstream 86bp 10997 chr1 160326499 160326499 1 + A G UCEC 160326500 + 160326480 160326520 41 CAGTGGTCAACCTCACCCGAGAGCAGTGCCAGGATCCAAGT CAGTGGTCAACCTCACCCGGGAGCAGTGCCAGGATCCAAGT < 41bp 0.705817135766216 0.502669065154898 NA NA prediction 0.406296141222635 Functional Loss - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160326500 chr1:160326499 synonymous SNV . 0 20 hm7G_associated_SNPs_11623 0 0 1 0 1 NCSTN chr1:160326544 5'GT 160326544 Upstream 46bp 10998 chr18 2743909 2743909 1 + T C COAD 2743910 + 2743890 2743930 41 TAAACTTCTCCTTATAGACTGGCCAGAACTAAAGGAGGTAA TAAACTTCTCCTTATAGACCGGCCAGAACTAAAGGAGGTAA < 41bp 0.707139652586045 0.503993932834415 NA NA prediction 0.40629143950326 Functional Loss - SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2743910 chr18:2743909 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_11624 0 0 1 0 1 SMCHD1 chr18:2743926 5'GT 2743926 Upstream 18bp 10999 chr1 53676924 53676924 1 + T C rs113493395 53676925 + 53676905 53676945 41 CCTCCAGGCACAGTGCTGGTGAGCTTCAGCAGATGATGGTT CCTCCAGGCACAGTGCTGGCGAGCTTCAGCAGATGATGGTT < 41bp 0.703138284785186 0.499415988136441 NA NA prediction 0.406276569570373 Functional Loss - CPT2;CPT2 ENSG00000157184 CDS Human protein_coding chr1:53676925 chr1:53676924 synonymous SNV . 0 20 hm7G_associated_SNPs_11625 1 0 0 0 1 CPT2 chr1:53676991 5'GT 53676991 Upstream 68bp 11000 chrX 51644996 51644996 1 + T C rs142436276 51644997 + 51644977 51645017 41 CCAACTTCGCTGCCAACTTTGGTGCCATTGGTTTCTTCTGG CCAACTTCGCTGCCAACTTCGGTGCCATTGGTTTCTTCTGG < 41bp 0.719081451288736 0.515943668410024 NA NA prediction 0.406275565757424 Functional Loss - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51644997 chrX:51644996 synonymous SNV . 0 20 hm7G_associated_SNPs_11626 0 0 1 0 1 MAGED1 chrX:51645034 5'GT 51645034 Upstream 39bp 11001 chr3 52544004 52544004 1 + T C UCEC 52544005 + 52543985 52544025 41 ACGAGTCCATGGGGGACTGTGGGCCCACAGGGCTGGCCCAG ACGAGTCCATGGGGGACTGCGGGCCCACAGGGCTGGCCCAG < 41bp 0.718546820868313 0.515419082313558 NA NA prediction 0.40625547710951 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52544005 chr3:52544004 synonymous SNV . 0 20 hm7G_associated_SNPs_11627 0 0 0 0 1 STAB1 chr3:52544072 5'GT 52544072 Upstream 69bp 11002 chr1 116573996 116573996 1 + T C UCEC 116573997 + 116573977 116574017 41 TCTCTTTCAGATTCATTCCTGAATCACCTCGTTGGTTATAC TCTCTTTCAGATTCATTCCCGAATCACCTCGTTGGTTATAC < 41bp 0.751406408935593 0.54828224185654 NA NA prediction 0.406248334158107 Functional Loss - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116573997 chr1:116573996 synonymous SNV . 0 20 hm7G_associated_SNPs_11628 0 0 0 0 1 SLC22A15 chr1:116573987 3'AG 116573987 Downstream 10bp 11003 chr3 47889791 47889791 1 + T C COAD 47889792 + 47889772 47889812 41 CGAAGCCGGCTGGAGAAAATGGTCCCTTTCCAAGTGCCAGA CGAAGCCGGCTGGAGAAAACGGTCCCTTTCCAAGTGCCAGA < 41bp 0.753646606198152 0.550534893003529 NA NA prediction 0.406223426389247 Functional Loss - DHX30 ENSG00000132153 CDS Human protein_coding chr3:47889792 chr3:47889791 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_11630 0 0 1 0 1 DHX30 chr3:47889876 5'GT 47889876 Upstream 86bp 11004 chr2 219267787 219267787 1 + T G UCEC 219267788 + 219267768 219267808 41 TGAAGCGTCCTCACGTGGATGAGTTCCTGCAGCGAATGGGC TGAAGCGTCCTCACGTGGAGGAGTTCCTGCAGCGAATGGGC < 41bp 0.703110658434667 0.350653685955446 NA NA prediction 0.406221316869334 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219267788 chr2:219267787 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_11631 0 0 1 0 2 CTDSP1 chr2:219267758 3'AG 219267758 Downstream 30bp 11005 chr2 219267787 219267787 1 + T G UCEC 219267788 + 219267768 219267808 41 TGAAGCGTCCTCACGTGGATGAGTTCCTGCAGCGAATGGGC TGAAGCGTCCTCACGTGGAGGAGTTCCTGCAGCGAATGGGC < 41bp 0.703110658434667 0.350653685955446 NA NA prediction 0.406221316869334 Functional Loss - CTDSP1 ENSG00000144579 CDS Human protein_coding chr2:219267788 chr2:219267787 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_11631 0 0 1 0 2 CTDSP1 chr2:219267850 5'GT 219267850 Upstream 64bp 11006 chr20 13782197 13782197 1 + T C rs150955045 13782198 + 13782178 13782218 41 TTGGAGGCGACACACTCTATGAACTTCGGTGTTCCTTACAG TTGGAGGCGACACACTCTACGAACTTCGGTGTTCCTTACAG < 41bp 0.732769527425888 0.529666995347009 NA NA prediction 0.406205064157757 Functional Loss - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13782198 chr20:13782197 synonymous SNV . 0 20 hm7G_associated_SNPs_11632 1 0 1 0 1 NDUFAF5 chr20:13782132 3'AG 13782132 Downstream 66bp 11007 chr17 2894595 2894595 1 + T C STAD 2894596 + 2894576 2894616 41 CTGTTTCTCTTTCAGACCCTGGAGGAGGAGCTATTTGGGAA CTGTTTCTCTTTCAGACCCCGGAGGAGGAGCTATTTGGGAA < 41bp 0.748533417013181 0.545433191785518 NA NA prediction 0.406200450455326 Functional Loss - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2894596 chr17:2894595 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11634 0 0 1 0 1 RAP1GAP2 chr17:2894591 3'AG 2894591 Downstream 5bp 11008 chr22 51117798 51117798 1 + T C UCEC 51117799 + 51117779 51117819 41 CTGTTCTATGGGGCAGACATGGGGGCCCAGAACGCCTCGGG CTGTTCTATGGGGCAGACACGGGGGCCCAGAACGCCTCGGG < 41bp 0.7575325585415 0.554440062040234 NA NA prediction 0.406184993002533 Functional Loss - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117799 chr22:51117798 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_11638 0 0 0 0 2 SHANK3 chr22:51117740 3'AG 51117740 Downstream 59bp 11009 chr22 51117798 51117798 1 + T C UCEC 51117799 + 51117779 51117819 41 CTGTTCTATGGGGCAGACATGGGGGCCCAGAACGCCTCGGG CTGTTCTATGGGGCAGACACGGGGGCCCAGAACGCCTCGGG < 41bp 0.7575325585415 0.554440062040234 NA NA prediction 0.406184993002533 Functional Loss - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51117799 chr22:51117798 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_11638 0 0 0 0 2 SHANK3 chr22:51117856 5'GT 51117856 Upstream 59bp 11010 chr3 52556822 52556822 1 + T C COAD 52556823 + 52556803 52556843 41 CTGTGCCTCATGGGCTGGCTGGCCAATGGCTCCACTGCCCA CTGTGCCTCATGGGCTGGCCGGCCAATGGCTCCACTGCCCA < 41bp 0.703091107720931 0.499657999726494 NA NA prediction 0.406182215441861 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52556823 chr3:52556822 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_11639 0 0 0 0 1 STAB1 chr3:52556791 3'AG 52556791 Downstream 32bp 11011 chr7 86810643 86810643 1 + T G rs553235636 86810644 + 86810624 86810664 41 GATATACACCTGAAGAAATTGAGAAGCTCAAGGAGTAAGTT GATATACACCTGAAGAAATGGAGAAGCTCAAGGAGTAAGTT < 41bp 0.778885208409962 0.575804855008881 NA NA prediction 0.406160706802162 Functional Loss - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86810644 chr7:86810643 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11641 0 0 1 0 2 DMTF1 chr7:86810625 3'AG 86810625 Downstream 19bp 11012 chr7 86810643 86810643 1 + T G rs553235636 86810644 + 86810624 86810664 41 GATATACACCTGAAGAAATTGAGAAGCTCAAGGAGTAAGTT GATATACACCTGAAGAAATGGAGAAGCTCAAGGAGTAAGTT < 41bp 0.778885208409962 0.575804855008881 NA NA prediction 0.406160706802162 Functional Loss - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86810644 chr7:86810643 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11641 0 0 1 0 2 DMTF1 chr7:86810657 5'GT 86810657 Upstream 15bp 11013 chr5 80338745 80338745 1 + T C LUAD 80338746 + 80338726 80338766 41 GGTCAGAAGCCACTGGAGCTGCGCTGTGAGGAGGAGCAGGA GGTCAGAAGCCACTGGAGCCGCGCTGTGAGGAGGAGCAGGA < 41bp 0.747144532889767 0.544083166612685 NA NA prediction 0.406122732554165 Functional Loss - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80338746 chr5:80338745 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11643 0 0 1 0 2 RASGRF2 chr5:80338696 3'AG 80338696 Downstream 50bp 11014 chr5 80338745 80338745 1 + T C LUAD 80338746 + 80338726 80338766 41 GGTCAGAAGCCACTGGAGCTGCGCTGTGAGGAGGAGCAGGA GGTCAGAAGCCACTGGAGCCGCGCTGTGAGGAGGAGCAGGA < 41bp 0.747144532889767 0.544083166612685 NA NA prediction 0.406122732554165 Functional Loss - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80338746 chr5:80338745 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11643 0 0 1 0 2 RASGRF2 chr5:80338802 5'GT 80338802 Upstream 58bp 11015 chr16 30974776 30974776 1 + T C TGCT 30974777 + 30974757 30974797 41 AACAACGAATGAAATACTATGAACTAATTGTCAATGGCTCC AACAACGAATGAAATACTACGAACTAATTGTCAATGGCTCC < 41bp 0.737164759692822 0.53410384515549 NA NA prediction 0.406121829074664 Functional Loss - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30974777 chr16:30974776 synonymous SNV . 0 20 hm7G_associated_SNPs_11644 0 0 1 0 2 SETD1A chr16:30974754 3'AG 30974754 Downstream 23bp 11016 chr16 30974776 30974776 1 + T C TGCT 30974777 + 30974757 30974797 41 AACAACGAATGAAATACTATGAACTAATTGTCAATGGCTCC AACAACGAATGAAATACTACGAACTAATTGTCAATGGCTCC < 41bp 0.737164759692822 0.53410384515549 NA NA prediction 0.406121829074664 Functional Loss - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30974777 chr16:30974776 synonymous SNV . 0 20 hm7G_associated_SNPs_11644 0 0 1 0 2 SETD1A chr16:30974875 5'GT 30974875 Upstream 100bp 11017 chr5 180475240 180475240 1 + T C rs55893920 180475241 + 180475221 180475261 41 TCCACTCCGACAACTTCTCTGGCGAAGCTCTCTGGGAACTG TCCACTCCGACAACTTCTCCGGCGAAGCTCTCTGGGAACTG < 41bp 0.73332420528162 0.530267510107827 NA NA prediction 0.406113390347586 Functional Loss - BTNL9 ENSG00000165810 CDS Human protein_coding chr5:180475241 chr5:180475240 synonymous SNV . 0 20 hm7G_associated_SNPs_11645 0 0 0 0 1 BTNL9 chr5:180475271 5'GT 180475271 Upstream 32bp 11018 chr4 76442147 76442147 1 + T C SARC 76442148 + 76442128 76442168 41 CAAATATTAAACTGAAACCTGGAGTCATACCTTCTATCTTT CAAATATTAAACTGAAACCCGGAGTCATACCTTCTATCTTT < 41bp 0.704181147418383 0.501128990876248 NA NA prediction 0.406104313084271 Functional Loss - THAP6 ENSG00000174796 CDS Human protein_coding chr4:76442148 chr4:76442147 synonymous SNV . 0 20 hm7G_associated_SNPs_11646 0 0 1 1 1 THAP6 chr4:76442189 5'GT 76442189 Upstream 43bp 11019 chr1 236850094 236850094 1 + A G LUAD 236850095 + 236850075 236850115 41 AGCCTGGGAGAAGCAGCAGAGGAAGGTCAGCAGGGGCCCGC AGCCTGGGAGAAGCAGCAGGGGAAGGTCAGCAGGGGCCCGC < 41bp 0.733309278785653 0.530258460325642 NA NA prediction 0.406101636920022 Functional Loss - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236850095 chr1:236850094 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_11647 0 0 0 0 1 ACTN2 chr1:236850099 5'GT 236850099 Upstream 6bp 11020 chr3 153943704 153943704 1 + T C BLCA 153943705 + 153943685 153943725 41 GAGGTGAATTGACAGCCTATGTTGAAGACACTGTGCTTTTC GAGGTGAATTGACAGCCTACGTTGAAGACACTGTGCTTTTC < 41bp 0.725068872234256 0.522018566971989 NA NA prediction 0.406100610524533 Functional Loss - ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153943705 chr3:153943704 synonymous SNV . 0 20 hm7G_associated_SNPs_11648 0 0 1 0 2 ARHGEF26 chr3:153943645 3'AG 153943645 Downstream 60bp 11021 chr3 153943704 153943704 1 + T C BLCA 153943705 + 153943685 153943725 41 GAGGTGAATTGACAGCCTATGTTGAAGACACTGTGCTTTTC GAGGTGAATTGACAGCCTACGTTGAAGACACTGTGCTTTTC < 41bp 0.725068872234256 0.522018566971989 NA NA prediction 0.406100610524533 Functional Loss - ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153943705 chr3:153943704 synonymous SNV . 0 20 hm7G_associated_SNPs_11648 0 0 1 0 2 ARHGEF26 chr3:153943799 5'GT 153943799 Upstream 96bp 11022 chr2 155306999 155306999 1 + T G UCS 155307000 + 155306980 155307020 41 GACAAAATGGTGCCTACAATGCAGGACTGTAGTGGAAGCAG GACAAAATGGTGCCTACAAGGCAGGACTGTAGTGGAAGCAG < 41bp 0.703049340864276 0.411703396780118 NA NA prediction 0.406098681728553 Functional Loss - GALNT13 ENSG00000144278 CDS Human protein_coding chr2:155307000 chr2:155306999 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11650 0 0 0 3 1 GALNT13 chr2:155306923 3'AG 155306923 Downstream 77bp 11023 chr3 40457399 40457399 1 + T C UCEC 40457400 + 40457380 40457420 41 GTGCCCTGGACTTAGGTGGTGCCTCCACCCAAATATCCTTC GTGCCCTGGACTTAGGTGGCGCCTCCACCCAAATATCCTTC < 41bp 0.76040451714743 0.557355774265113 NA NA prediction 0.406097485764633 Functional Loss - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40457400 chr3:40457399 synonymous SNV . 0 20 hm7G_associated_SNPs_11651 0 0 0 0 1 ENTPD3 chr3:40457331 3'AG 40457331 Downstream 69bp 11024 chr15 78393899 78393899 1 + A G rs186449076 78393900 + 78393880 78393920 41 GAGACTGGACGGACACACAAGGTGAGCTCCATGATGGGGTG GAGACTGGACGGACACACAGGGTGAGCTCCATGATGGGGTG < 41bp 0.711795386089896 0.508753049883691 NA NA prediction 0.40608467241241 Functional Loss - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78393900 chr15:78393899 nonsynonymous SNV 0.148 3 20 hm7G_associated_SNPs_11653 0 0 0 0 1 SH2D7 chr15:78393900 5'GT 78393900 Upstream 2bp 11025 chr14 23311908 23311908 1 + A G LIHC 23311909 + 23311889 23311929 41 TGCCGAGCCTTGGACTGTCAGGAATGAGGATCTGAATGGTG TGCCGAGCCTTGGACTGTCGGGAATGAGGATCTGAATGGTG < 41bp 0.755925938228307 0.552891224019389 NA NA prediction 0.406069428417836 Functional Loss - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311909 chr14:23311908 nonsynonymous SNV 0.843 0 20 hm7G_associated_SNPs_11654 0 0 0 0 1 MMP14 chr14:23311926 5'GT 23311926 Upstream 19bp 11026 chr12 57911116 57911116 1 - A C OV 57911115 - 57911095 57911135 41 GAAGCCTGGTATGAGGACCTGCAAGAGGTCCTGTCTTCAGA GAAGCCTGGTATGAGGACCGGCAAGAGGTCCTGTCTTCAGA < 41bp 0.906881031382253 0.703857492500591 NA NA prediction 0.406047077763323 Functional Loss - DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911115 chr12:57911116 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11655 0 0 1 0 2 DDIT3 chr12:57911052 5'GT 57911052 Upstream 65bp 11027 chr12 57911116 57911116 1 - A C OV 57911115 - 57911095 57911135 41 GAAGCCTGGTATGAGGACCTGCAAGAGGTCCTGTCTTCAGA GAAGCCTGGTATGAGGACCGGCAAGAGGTCCTGTCTTCAGA < 41bp 0.906881031382253 0.703857492500591 NA NA prediction 0.406047077763323 Functional Loss - DDIT3 ENSG00000175197 CDS Human protein_coding chr12:57911115 chr12:57911116 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11655 0 0 1 0 2 DDIT3 chr12:57911207 3'AG 57911207 Downstream 92bp 11028 chr8 98954016 98954016 1 + T C COAD 98954017 + 98953997 98954037 41 CCTTTCAGCGGCCCATATGTGCAGCACCCTGGAGCATAACT CCTTTCAGCGGCCCATATGCGCAGCACCCTGGAGCATAACT < 41bp 0.703019477219065 0.484990713656886 NA NA prediction 0.40603895443813 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:98954017 chr8:98954016 nonsynonymous SNV 0.957 4 20 hm7G_associated_SNPs_11656 0 0 0 0 1 MATN2 chr8:98954005 3'AG 98954005 Downstream 12bp 11029 chr15 57816816 57816816 1 + T C UCEC 57816817 + 57816797 57816837 41 GCCTCCCGTACCTCAACCCTGGAGCTCCAGAACCAGCTGGA GCCTCCCGTACCTCAACCCCGGAGCTCCAGAACCAGCTGGA < 41bp 0.761915011406261 0.558896075187475 NA NA prediction 0.406037872437573 Functional Loss - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57816817 chr15:57816816 nonsynonymous SNV 0.617 1 20 hm7G_associated_SNPs_11658 0 0 1 0 1 CGNL1 chr15:57816779 3'AG 57816779 Downstream 38bp 11030 chr8 98943665 98943665 1 + T C rs187552048 98943666 + 98943646 98943686 41 CCTTGAAGTCCATTGGGAGTGAGCCCCATGAGGACCATGTC CCTTGAAGTCCATTGGGAGCGAGCCCCATGAGGACCATGTC < 41bp 0.745657965894363 0.542639638475568 NA NA prediction 0.40603665483759 Functional Loss - MATN2 ENSG00000132561 CDS Human protein_coding chr8:98943666 chr8:98943665 synonymous SNV . 0 20 hm7G_associated_SNPs_11659 0 0 0 0 1 MATN2 chr8:98943750 5'GT 98943750 Upstream 86bp 11031 chr16 56933523 56933523 1 + T C LUSC 56933524 + 56933504 56933544 41 TCAACCAGAACCCTCGGGCTGAGCAGTAAGTTCTGTTTTGG TCAACCAGAACCCTCGGGCCGAGCAGTAAGTTCTGTTTTGG < 41bp 0.716529771495993 0.513511638480151 NA NA prediction 0.406036266031683 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56933524 chr16:56933523 synonymous SNV . 0 20 hm7G_associated_SNPs_11660 0 0 0 0 2 SLC12A3 chr16:56933442 3'AG 56933442 Downstream 82bp 11032 chr16 56933523 56933523 1 + T C LUSC 56933524 + 56933504 56933544 41 TCAACCAGAACCCTCGGGCTGAGCAGTAAGTTCTGTTTTGG TCAACCAGAACCCTCGGGCCGAGCAGTAAGTTCTGTTTTGG < 41bp 0.716529771495993 0.513511638480151 NA NA prediction 0.406036266031683 Functional Loss - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56933524 chr16:56933523 synonymous SNV . 0 20 hm7G_associated_SNPs_11660 0 0 0 0 2 SLC12A3 chr16:56933528 5'GT 56933528 Upstream 6bp 11033 chr4 3419229 3419229 1 + A G LIHC 3419230 + 3419210 3419250 41 GCGGACCAGGAGCACCGGGAGGTCCCAGAAAAAGAGGGAGC GCGGACCAGGAGCACCGGGGGGTCCCAGAAAAAGAGGGAGC < 41bp 0.734874328826386 0.531863784353665 NA NA prediction 0.406021088945443 Functional Loss - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3419230 chr4:3419229 nonsynonymous SNV 0.854 3 20 hm7G_associated_SNPs_11661 0 0 1 0 1 RGS12 chr4:3419268 5'GT 3419268 Upstream 40bp 11034 chr6 33173243 33173243 1 + A G UCEC 33173244 + 33173224 33173264 41 GGCACCTTCCTAGTCACTCAGGCTGCAGCACAAGCCCTGGT GGCACCTTCCTAGTCACTCGGGCTGCAGCACAAGCCCTGGT < 41bp 0.754913753283629 0.551910025990674 NA NA prediction 0.40600745458591 Functional Loss - HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33173244 chr6:33173243 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11663 0 0 1 0 2 HSD17B8 chr6:33173224 3'AG 33173224 Downstream 20bp 11035 chr6 33173243 33173243 1 + A G UCEC 33173244 + 33173224 33173264 41 GGCACCTTCCTAGTCACTCAGGCTGCAGCACAAGCCCTGGT GGCACCTTCCTAGTCACTCGGGCTGCAGCACAAGCCCTGGT < 41bp 0.754913753283629 0.551910025990674 NA NA prediction 0.40600745458591 Functional Loss - HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33173244 chr6:33173243 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11663 0 0 1 0 2 HSD17B8 chr6:33173316 5'GT 33173316 Upstream 74bp 11036 chr19 7712364 7712364 1 + A G rs61736586 7712365 + 7712345 7712385 41 GGCCGCCTACGAGGTGACCAGGGCCACCGAGGGCAAGTGGG GGCCGCCTACGAGGTGACCGGGGCCACCGAGGGCAAGTGGG < 41bp 0.734971150210958 0.531974079776789 NA NA prediction 0.405994140868339 Functional Loss - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7712365 chr19:7712364 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11664 1 0 1 0 1 STXBP2 chr19:7712397 5'GT 7712397 Upstream 34bp 11037 chr20 2291705 2291705 1 + A G SARC 2291706 + 2291686 2291726 41 GAGAGAGAAGAGTATGTTCAGGAAGATGCCGGCATCATCTT GAGAGAGAAGAGTATGTTCGGGAAGATGCCGGCATCATCTT < 41bp 0.779587896873887 0.576591184295804 NA NA prediction 0.405993425156166 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2291706 chr20:2291705 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_11665 0 0 0 0 2 TGM3 chr20:2291657 3'AG 2291657 Downstream 49bp 11038 chr20 2291705 2291705 1 + A G SARC 2291706 + 2291686 2291726 41 GAGAGAGAAGAGTATGTTCAGGAAGATGCCGGCATCATCTT GAGAGAGAAGAGTATGTTCGGGAAGATGCCGGCATCATCTT < 41bp 0.779587896873887 0.576591184295804 NA NA prediction 0.405993425156166 Functional Loss - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2291706 chr20:2291705 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_11665 0 0 0 0 2 TGM3 chr20:2291775 5'GT 2291775 Upstream 71bp 11039 chr5 162009 162009 1 + A G PCPG 162010 + 161990 162030 41 GGTCAGCCAGGCTGAGTGCAGGGAGGGAGAGCTGGCCAGGT GGTCAGCCAGGCTGAGTGCGGGGAGGGAGAGCTGGCCAGGT < 41bp 0.750209523995985 0.547213842624439 NA NA prediction 0.405991362743093 Functional Loss - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:162010 chr5:162009 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_11666 0 0 0 0 1 PLEKHG4B chr5:162059 5'GT 162059 Upstream 51bp 11040 chrX 153657424 153657424 1 + T C LUAD 153657425 + 153657405 153657445 41 CTCCTGCGGCCGACACTCATGAAGGCCACATCACCAGCGAC CTCCTGCGGCCGACACTCACGAAGGCCACATCACCAGCGAC < 41bp 0.7242530909538 0.521258634707757 NA NA prediction 0.405988912492086 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153657425 chrX:153657424 synonymous SNV . 0 20 hm7G_associated_SNPs_11667 0 0 1 0 2 ATP6AP1 chrX:153657394 3'AG 153657394 Downstream 31bp 11041 chrX 153657424 153657424 1 + T C LUAD 153657425 + 153657405 153657445 41 CTCCTGCGGCCGACACTCATGAAGGCCACATCACCAGCGAC CTCCTGCGGCCGACACTCACGAAGGCCACATCACCAGCGAC < 41bp 0.7242530909538 0.521258634707757 NA NA prediction 0.405988912492086 Functional Loss - ATP6AP1 ENSG00000071553 CDS Human protein_coding chrX:153657425 chrX:153657424 synonymous SNV . 0 20 hm7G_associated_SNPs_11667 0 0 1 0 2 ATP6AP1 chrX:153657520 5'GT 153657520 Upstream 97bp 11042 chr1 247611773 247611773 1 + T C LUAD 247611774 + 247611754 247611794 41 CACTTCAAGAAGAAAAGCCTGAGCTGACCGTCGTCTTTGAG CACTTCAAGAAGAAAAGCCCGAGCTGACCGTCGTCTTTGAG < 41bp 0.724906304812936 0.521923910265055 NA NA prediction 0.405964789095763 Functional Loss - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247611774 chr1:247611773 synonymous SNV . 0 20 hm7G_associated_SNPs_11668 0 0 0 0 1 NLRP3 chr1:247611707 3'AG 247611707 Downstream 67bp 11043 chr2 206580920 206580920 1 + T C KIRC 206580921 + 206580901 206580941 41 TGCCATCCCCACCCAGGTATGACTTTATCGAGATTCGGGAT TGCCATCCCCACCCAGGTACGACTTTATCGAGATTCGGGAT < 41bp 0.718750654156753 0.515780833651555 NA NA prediction 0.405939641010397 Functional Loss - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206580921 chr2:206580920 synonymous SNV . 0 20 hm7G_associated_SNPs_11670 0 0 0 0 1 NRP2 chr2:206580917 3'AG 206580917 Downstream 4bp 11044 chr17 73230849 73230849 1 + T C GBM 73230850 + 73230830 73230870 41 TCTTTCTGGATGACTCTGCTGACAGACGCCTTGCCCCTTTT TCTTTCTGGATGACTCTGCCGACAGACGCCTTGCCCCTTTT < 41bp 0.763422421863177 0.560458872192297 NA NA prediction 0.405927099341761 Functional Loss - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73230850 chr17:73230849 nonsynonymous SNV 0.076 4 20 hm7G_associated_SNPs_11671 0 0 1 0 1 NUP85 chr17:73230883 5'GT 73230883 Upstream 35bp 11045 chr2 43991401 43991401 1 + T C BLCA 43991402 + 43991382 43991422 41 TATGTGTACAAGAGTCTAATGACCTTTGGAGGCTATCAAGA TATGTGTACAAGAGTCTAACGACCTTTGGAGGCTATCAAGA < 41bp 0.712946649713057 0.50998707435527 NA NA prediction 0.405919150715574 Functional Loss - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43991402 chr2:43991401 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11674 0 0 0 0 1 PLEKHH2 chr2:43991367 3'AG 43991367 Downstream 35bp 11046 chrX 48545194 48545194 1 + T G GBM 48545195 + 48545175 48545215 41 CCAGTGGGTCCGCTCTCCCTGGGGCTGGCGACAGTGGACAT CCAGTGGGTCCGCTCTCCCGGGGGCTGGCGACAGTGGACAT < 41bp 0.916855334703545 0.713895859985394 NA NA prediction 0.405918949436301 Functional Loss - WAS ENSG00000015285 CDS Human protein_coding chrX:48545195 chrX:48545194 nonsynonymous SNV 0.623 3 20 hm7G_associated_SNPs_11676 0 0 1 0 1 WAS chrX:48545170 3'AG 48545170 Downstream 25bp 11047 chr22 41620091 41620091 1 + T C rs34289721 41620092 + 41620072 41620112 41 GTGGTGGACAAGTCCCAGGTGTCACGCACTCGCATGGCTGT GTGGTGGACAAGTCCCAGGCGTCACGCACTCGCATGGCTGT < 41bp 0.702955862126306 0.499386934345911 NA NA prediction 0.405911724252612 Functional Loss - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41620092 chr22:41620091 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_11677 0 0 1 0 1 L3MBTL2 chr22:41620024 3'AG 41620024 Downstream 68bp 11048 chr3 44935152 44935152 1 + A G rs140575096 44935153 + 44935133 44935173 41 CCATTACGTGGGGGCTGCCAGAAGTATCAAATGCAAACCCT CCATTACGTGGGGGCTGCCGGAAGTATCAAATGCAAACCCT < 41bp 0.706716935885841 0.503770313094447 NA NA prediction 0.405893245582786 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44935153 chr3:44935152 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_11678 0 0 0 0 2 TGM4 chr3:44935069 3'AG 44935069 Downstream 84bp 11049 chr3 44935152 44935152 1 + A G rs140575096 44935153 + 44935133 44935173 41 CCATTACGTGGGGGCTGCCAGAAGTATCAAATGCAAACCCT CCATTACGTGGGGGCTGCCGGAAGTATCAAATGCAAACCCT < 41bp 0.706716935885841 0.503770313094447 NA NA prediction 0.405893245582786 Functional Loss - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44935153 chr3:44935152 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_11678 0 0 0 0 2 TGM4 chr3:44935187 5'GT 44935187 Upstream 36bp 11050 chrX 54574710 54574710 1 + A G UCEC 54574711 + 54574691 54574731 41 CTCTGAGTCACTGCTGAAAAGCAAAGCCTGCTTTGGAGCTG CTCTGAGTCACTGCTGAAAGGCAAAGCCTGCTTTGGAGCTG < 41bp 0.717204711674926 0.514266745962353 NA NA prediction 0.405875931425146 Functional Loss - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54574711 chrX:54574710 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_11679 0 0 1 0 2 GNL3L chrX:54574662 3'AG 54574662 Downstream 49bp 11051 chrX 54574710 54574710 1 + A G UCEC 54574711 + 54574691 54574731 41 CTCTGAGTCACTGCTGAAAAGCAAAGCCTGCTTTGGAGCTG CTCTGAGTCACTGCTGAAAGGCAAAGCCTGCTTTGGAGCTG < 41bp 0.717204711674926 0.514266745962353 NA NA prediction 0.405875931425146 Functional Loss - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54574711 chrX:54574710 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_11679 0 0 1 0 2 GNL3L chrX:54574806 5'GT 54574806 Upstream 97bp 11052 chr20 62614540 62614540 1 + A G LIHC 62614541 + 62614521 62614561 41 GCTGCTGACGATGACGACGAGGATCTAAATGACACCAATTA GCTGCTGACGATGACGACGGGGATCTAAATGACACCAATTA < 41bp 0.724306895590911 0.521374721112374 NA NA prediction 0.405864348957074 Functional Loss - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62614541 chr20:62614540 nonsynonymous SNV 0.822 1 20 hm7G_associated_SNPs_11680 0 0 1 0 1 PRPF6 chr20:62614568 5'GT 62614568 Upstream 29bp 11053 chr19 49674618 49674618 1 + T C GBM 49674619 + 49674599 49674639 41 CTCTTCTTGCCTCAGGGACTGGAATTGACATCCCTGTCCTG CTCTTCTTGCCTCAGGGACCGGAATTGACATCCCTGTCCTG < 41bp 0.738331081535425 0.535407011703223 NA NA prediction 0.405848139664404 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49674619 chr19:49674618 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_11682 0 0 1 0 2 TRPM4 chr19:49674614 3'AG 49674614 Downstream 5bp 11054 chr19 49674618 49674618 1 + T C GBM 49674619 + 49674599 49674639 41 CTCTTCTTGCCTCAGGGACTGGAATTGACATCCCTGTCCTG CTCTTCTTGCCTCAGGGACCGGAATTGACATCCCTGTCCTG < 41bp 0.738331081535425 0.535407011703223 NA NA prediction 0.405848139664404 Functional Loss - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49674619 chr19:49674618 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_11682 0 0 1 0 2 TRPM4 chr19:49674675 5'GT 49674675 Upstream 58bp 11055 chr12 9840655 9840655 1 + T C SARC 9840656 + 9840636 9840676 41 ACTCACAAGATGCTGATCTTGCTCAGGTTGAAAGCTTCCAG ACTCACAAGATGCTGATCTCGCTCAGGTTGAAAGCTTCCAG < 41bp 0.702898553992185 0.496572353504247 NA NA prediction 0.405797107984371 Functional Loss - CLEC2D ENSG00000069493 CDS Human protein_coding chr12:9840656 chr12:9840655 synonymous SNV . 0 20 hm7G_associated_SNPs_11686 0 0 1 0 1 CLEC2D chr12:9840682 5'GT 9840682 Upstream 28bp 11056 chr16 8839954 8839954 1 + A G rs1731017 8839955 + 8839935 8839975 41 GTCCCAGGGCCTAGATCTCAGGTGAGTTGAGCACACCTGAG GTCCCAGGGCCTAGATCTCGGGTGAGTTGAGCACACCTGAG < 41bp 0.702895671851669 0.496366041419038 NA NA prediction 0.405791343703338 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8839955 chr16:8839954 nonsynonymous SNV 0.759 0 20 hm7G_associated_SNPs_11687 1 0 1 0 2 ABAT chr16:8839858 3'AG 8839858 Downstream 97bp 11057 chr16 8839954 8839954 1 + A G rs1731017 8839955 + 8839935 8839975 41 GTCCCAGGGCCTAGATCTCAGGTGAGTTGAGCACACCTGAG GTCCCAGGGCCTAGATCTCGGGTGAGTTGAGCACACCTGAG < 41bp 0.702895671851669 0.496366041419038 NA NA prediction 0.405791343703338 Functional Loss - ABAT ENSG00000183044 CDS Human protein_coding chr16:8839955 chr16:8839954 nonsynonymous SNV 0.759 0 20 hm7G_associated_SNPs_11687 1 0 1 0 2 ABAT chr16:8839955 5'GT 8839955 Upstream 2bp 11058 chr3 113321957 113321957 1 + T C COAD 113321958 + 113321938 113321978 41 GAGAGCGACTTCGACACCATGCCAGACATTGAGAGTGATAA GAGAGCGACTTCGACACCACGCCAGACATTGAGAGTGATAA < 41bp 0.747942487533681 0.545052670438035 NA NA prediction 0.405779634191291 Functional Loss - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113321958 chr3:113321957 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_11688 0 0 0 0 1 SIDT1 chr3:113321997 5'GT 113321997 Upstream 41bp 11059 chr1 161127060 161127060 1 + T G OV 161127061 + 161127041 161127081 41 CAGGTGGTTTGGAAAATGCTGGTATATCCATGACCTCCTGA CAGGTGGTTTGGAAAATGCGGGTATATCCATGACCTCCTGA < 41bp 0.912399497162482 0.70951444209218 NA NA prediction 0.405770110140604 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127061 chr1:161127060 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11690 0 0 1 0 2 UFC1 chr1:161127044 3'AG 161127044 Downstream 17bp 11060 chr1 161127060 161127060 1 + T G OV 161127061 + 161127041 161127081 41 CAGGTGGTTTGGAAAATGCTGGTATATCCATGACCTCCTGA CAGGTGGTTTGGAAAATGCGGGTATATCCATGACCTCCTGA < 41bp 0.912399497162482 0.70951444209218 NA NA prediction 0.405770110140604 Functional Loss - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161127061 chr1:161127060 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11690 0 0 1 0 2 UFC1 chr1:161127107 5'GT 161127107 Upstream 48bp 11061 chr2 85852666 85852666 1 + T C GBM 85852667 + 85852647 85852687 41 TCTTTTGCTTTGCAGTATGTGTTGAAGCCCACTTTCACAAA TCTTTTGCTTTGCAGTATGCGTTGAAGCCCACTTTCACAAA < 41bp 0.702884328974705 0.497258262892552 NA NA prediction 0.40576865794941 Functional Loss - USP39 ENSG00000168883 CDS Human protein_coding chr2:85852667 chr2:85852666 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11691 0 0 1 0 1 USP39 chr2:85852662 3'AG 85852662 Downstream 5bp 11062 chr10 71017135 71017135 1 + T C COAD 71017136 + 71017116 71017156 41 GATACAGTGGGGACCATGATGACCTGTGGCTATGAAGATCC GATACAGTGGGGACCATGACGACCTGTGGCTATGAAGATCC < 41bp 0.751088337977002 0.548204411242386 NA NA prediction 0.405767853469233 Functional Loss - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71017136 chr10:71017135 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11692 0 0 0 0 1 HKDC1 chr10:71017182 5'GT 71017182 Upstream 48bp 11063 chr19 54933545 54933545 1 + T C COAD 54933546 + 54933526 54933566 41 GGAGTGCCCCTGAGCCCCCTGCAGGTGGCTGAAAATGTGTC GGAGTGCCCCTGAGCCCCCCGCAGGTGGCTGAAAATGTGTC < 41bp 0.734754357168863 0.531875302164781 NA NA prediction 0.405758110008165 Functional Loss - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54933546 chr19:54933545 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_11693 0 0 0 0 1 TTYH1 chr19:54933584 5'GT 54933584 Upstream 40bp 11064 chr15 40492550 40492550 1 + T G UCEC 40492551 + 40492531 40492571 41 TTCTGTTTGTCAAGTAAACTGTTGTGCCAGGTAAGACTACA TTCTGTTTGTCAAGTAAACGGTTGTGCCAGGTAAGACTACA < 41bp 0.702876048829535 0.38188978394483 NA NA prediction 0.405752097659071 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40492551 chr15:40492550 nonsynonymous SNV 0.863 0 20 hm7G_associated_SNPs_11694 0 0 1 0 1 BUB1B chr15:40492560 5'GT 40492560 Upstream 11bp 11065 chrX 130220608 130220608 1 + T C UCEC 130220609 + 130220589 130220629 41 CTGCTGAAGCCCGGGCTGCTGTCCTTGCTCAAAGCAAGCCT CTGCTGAAGCCCGGGCTGCCGTCCTTGCTCAAAGCAAGCCT < 41bp 0.732339928579714 0.529464547941363 NA NA prediction 0.405750761276702 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220609 chrX:130220608 synonymous SNV . 0 20 hm7G_associated_SNPs_11695 0 0 0 0 2 ARHGAP36 chrX:130220533 3'AG 130220533 Downstream 76bp 11066 chrX 130220608 130220608 1 + T C UCEC 130220609 + 130220589 130220629 41 CTGCTGAAGCCCGGGCTGCTGTCCTTGCTCAAAGCAAGCCT CTGCTGAAGCCCGGGCTGCCGTCCTTGCTCAAAGCAAGCCT < 41bp 0.732339928579714 0.529464547941363 NA NA prediction 0.405750761276702 Functional Loss - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220609 chrX:130220608 synonymous SNV . 0 20 hm7G_associated_SNPs_11695 0 0 0 0 2 ARHGAP36 chrX:130220639 5'GT 130220639 Upstream 32bp 11067 chr22 32480562 32480562 1 + A G LUAD 32480563 + 32480543 32480583 41 ACTCCTTCCACATCTTCCGAGATCCCCTCACGGGAGACCTC ACTCCTTCCACATCTTCCGGGATCCCCTCACGGGAGACCTC < 41bp 0.728422067283704 0.525553528533453 NA NA prediction 0.405737077500502 Functional Loss - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32480563 chr22:32480562 synonymous SNV . 0 20 hm7G_associated_SNPs_11696 0 0 0 0 1 SLC5A1 chr22:32480646 5'GT 32480646 Upstream 85bp 11068 chr7 158711469 158711469 1 + T C STAD 158711470 + 158711450 158711490 41 AAGAGGATCGCTTGGCAGCTGAACCCAGCTGGAATCTTAGG AAGAGGATCGCTTGGCAGCCGAACCCAGCTGGAATCTTAGG < 41bp 0.753108877180837 0.550244529368039 NA NA prediction 0.405728695625596 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158711470 chr7:158711469 synonymous SNV . 0 20 hm7G_associated_SNPs_11697 0 0 1 1 2 WDR60 chr7:158711431 3'AG 158711431 Downstream 39bp 11069 chr7 158711469 158711469 1 + T C STAD 158711470 + 158711450 158711490 41 AAGAGGATCGCTTGGCAGCTGAACCCAGCTGGAATCTTAGG AAGAGGATCGCTTGGCAGCCGAACCCAGCTGGAATCTTAGG < 41bp 0.753108877180837 0.550244529368039 NA NA prediction 0.405728695625596 Functional Loss - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158711470 chr7:158711469 synonymous SNV . 0 20 hm7G_associated_SNPs_11697 0 0 1 1 2 WDR60 chr7:158711560 5'GT 158711560 Upstream 92bp 11070 chr12 7301658 7301658 1 + T G SKCM 7301659 + 7301639 7301679 41 CCCCCCAGATCCTGCTGAGTGGCACTGCTCATTTTGCCCGC CCCCCCAGATCCTGCTGAGGGGCACTGCTCATTTTGCCCGC < 41bp 0.702841989349538 0.341104200944285 NA NA prediction 0.405683978699077 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7301659 chr12:7301658 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_11699 0 0 1 0 1 CLSTN3 chr12:7301568 3'AG 7301568 Downstream 91bp 11071 chr1 65877093 65877093 1 + T C UCEC 65877094 + 65877074 65877114 41 TACAGGAAGGCTGTCCTGGTGGTGCACCCAGATAAAGTGGG TACAGGAAGGCTGTCCTGGCGGTGCACCCAGATAAAGTGGG < 41bp 0.751906074322461 0.549066461500147 NA NA prediction 0.405679225644626 Functional Loss - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65877094 chr1:65877093 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_11701 0 0 1 0 1 DNAJC6 chr1:65877109 5'GT 65877109 Upstream 17bp 11072 chr10 122622305 122622305 1 + A G GBM 122622306 + 122622286 122622326 41 CCCCATCCAAGCCTCCCTCAGGCCCTGGGAAAAAAGTTTAC CCCCATCCAAGCCTCCCTCGGGCCCTGGGAAAAAAGTTTAC < 41bp 0.702837870611596 0.49373516721536 NA NA prediction 0.405675741223191 Functional Loss - WDR11 ENSG00000120008 CDS Human protein_coding chr10:122622306 chr10:122622305 synonymous SNV . 0 20 hm7G_associated_SNPs_11702 0 0 1 0 1 WDR11 chr10:122622247 3'AG 122622247 Downstream 59bp 11073 chr5 7706904 7706904 1 + T C LUSC 7706905 + 7706885 7706925 41 ATCAACATGCGCGTGGGCGTGCATTCTGGGAATGTCCTGTG ATCAACATGCGCGTGGGCGCGCATTCTGGGAATGTCCTGTG < 41bp 0.727274578486496 0.524470255222194 NA NA prediction 0.405608646528603 Functional Loss - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7706905 chr5:7706904 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_11703 0 0 0 0 1 ADCY2 chr5:7706857 3'AG 7706857 Downstream 48bp 11074 chr11 7669667 7669667 1 + T C KIRP 7669668 + 7669648 7669688 41 CACAGAGCGTGTGTGTGCATGGCTGGAGGACTTTGGCCTGG CACAGAGCGTGTGTGTGCACGGCTGGAGGACTTTGGCCTGG < 41bp 0.739712881250634 0.536928590832875 NA NA prediction 0.405568580835517 Functional Loss - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669668 chr11:7669667 nonsynonymous SNV 0.737 4 20 hm7G_associated_SNPs_11704 0 0 1 0 1 PPFIBP2 chr11:7669618 3'AG 7669618 Downstream 50bp 11075 chr9 116791017 116791017 1 + T C rs149965650 116791018 + 116790998 116791038 41 GCGTGACCCTCTCAGGTACTGCCCCCGGGTGGGAGCCACCG GCGTGACCCTCTCAGGTACCGCCCCCGGGTGGGAGCCACCG < 41bp 0.729465837520514 0.526685869623501 NA NA prediction 0.405559935794027 Functional Loss - ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116791018 chr9:116791017 synonymous SNV . 0 20 hm7G_associated_SNPs_11705 0 0 0 0 1 ZNF618 chr9:116791013 3'AG 116791013 Downstream 5bp 11076 chr3 49720037 49720037 1 + T C LIHC 49720038 + 49720018 49720058 41 GCAAGCCATGTGGCCCTTATGGGTGGTTCCCATGGTGGCTT GCAAGCCATGTGGCCCTTACGGGTGGTTCCCATGGTGGCTT < 41bp 0.743633388822044 0.540854042221564 NA NA prediction 0.40555869320096 Functional Loss - APEH ENSG00000164062 CDS Human protein_coding chr3:49720038 chr3:49720037 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11706 0 0 1 0 1 APEH chr3:49719979 3'AG 49719979 Downstream 59bp 11077 chr15 91423441 91423441 1 + T C STAD 91423442 + 91423422 91423462 41 CCCTGTCCTATAATCGCCGTGGCGACCTGGCCATCCACCTG CCCTGTCCTATAATCGCCGCGGCGACCTGGCCATCCACCTG < 41bp 0.724864288746169 0.522085575654636 NA NA prediction 0.405557426183065 Functional Loss - FURIN ENSG00000140564 CDS Human protein_coding chr15:91423442 chr15:91423441 synonymous SNV . 0 20 hm7G_associated_SNPs_11707 0 0 1 0 1 FURIN chr15:91423503 5'GT 91423503 Upstream 63bp 11078 chr11 7079636 7079636 1 + T C rs369413951 7079637 + 7079617 7079657 41 GATGGTGGAGTAAAGCTTATGAGTGATGCCCTGCAACATGC GATGGTGGAGTAAAGCTTACGAGTGATGCCCTGCAACATGC < 41bp 0.702777761626925 0.488742964745418 NA NA prediction 0.405555523253851 Functional Loss - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7079637 chr11:7079636 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_11708 0 0 0 0 1 NLRP14 chr11:7079681 5'GT 7079681 Upstream 46bp 11079 chr19 41111350 41111350 1 + A G ESCA 41111351 + 41111331 41111371 41 GTCCACGTGGAGCACCCGCAGGAGGCGTCGGTGGTGGTGCA GTCCACGTGGAGCACCCGCGGGAGGCGTCGGTGGTGGTGCA < 41bp 0.768484905832682 0.565708303127003 NA NA prediction 0.405553205411357 Functional Loss - LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41111351 chr19:41111350 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11710 0 0 1 0 1 LTBP4 chr19:41111311 3'AG 41111311 Downstream 40bp 11080 chr3 101476746 101476746 1 + T C KIRC 101476747 + 101476727 101476767 41 TTAACTTGGGCCTAGAAGATGATGGTGTTGCAGATGAATCT TTAACTTGGGCCTAGAAGACGATGGTGTTGCAGATGAATCT < 41bp 0.744166447650376 0.541397309263196 NA NA prediction 0.40553827677436 Functional Loss - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101476747 chr3:101476746 synonymous SNV . 0 20 hm7G_associated_SNPs_11711 0 0 1 0 1 CEP97 chr3:101476655 3'AG 101476655 Downstream 92bp 11081 chr2 27303051 27303051 1 + T C UCEC 27303052 + 27303032 27303072 41 TACGTGGTGACCCGGACAGTGAGCTGTGTCCTTGAGGATGG TACGTGGTGACCCGGACAGCGAGCTGTGTCCTTGAGGATGG < 41bp 0.725921241720615 0.523159135427565 NA NA prediction 0.405524212586102 Functional Loss - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27303052 chr2:27303051 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11712 0 0 1 0 2 EMILIN1 chr2:27303019 3'AG 27303019 Downstream 33bp 11082 chr2 27303051 27303051 1 + T C UCEC 27303052 + 27303032 27303072 41 TACGTGGTGACCCGGACAGTGAGCTGTGTCCTTGAGGATGG TACGTGGTGACCCGGACAGCGAGCTGTGTCCTTGAGGATGG < 41bp 0.725921241720615 0.523159135427565 NA NA prediction 0.405524212586102 Functional Loss - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27303052 chr2:27303051 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11712 0 0 1 0 2 EMILIN1 chr2:27303138 5'GT 27303138 Upstream 88bp 11083 chr1 43825182 43825182 1 + A G LUAD 43825183 + 43825163 43825203 41 AAATCCAGTTCCAAGGTTCAGACCACTCCTAGCAAACCTGG AAATCCAGTTCCAAGGTTCGGACCACTCCTAGCAAACCTGG < 41bp 0.722746505103224 0.519987442345403 NA NA prediction 0.405518125515643 Functional Loss - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43825183 chr1:43825182 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11713 0 0 1 0 1 CDC20 chr1:43825161 3'AG 43825161 Downstream 22bp 11084 chr14 93393029 93393029 1 + A G SKCM 93393030 + 93393010 93393050 41 GTCAGCCAGGAATGTTTTGAGACACTCCGAGGAGGTATGAG GTCAGCCAGGAATGTTTTGGGACACTCCGAGGAGGTATGAG < 41bp 0.725720536318045 0.522967452686882 NA NA prediction 0.405506167262327 Functional Loss - CHGA ENSG00000100604 CDS Human protein_coding chr14:93393030 chr14:93393029 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_11716 0 0 0 1 2 CHGA chr14:93392950 3'AG 93392950 Downstream 80bp 11085 chr14 93393029 93393029 1 + A G SKCM 93393030 + 93393010 93393050 41 GTCAGCCAGGAATGTTTTGAGACACTCCGAGGAGGTATGAG GTCAGCCAGGAATGTTTTGGGACACTCCGAGGAGGTATGAG < 41bp 0.725720536318045 0.522967452686882 NA NA prediction 0.405506167262327 Functional Loss - CHGA ENSG00000100604 CDS Human protein_coding chr14:93393030 chr14:93393029 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_11716 0 0 0 1 2 CHGA chr14:93393043 5'GT 93393043 Upstream 15bp 11086 chr9 2652886 2652886 1 + T C COAD 2652887 + 2652867 2652907 41 CTGTGTACTTGAAAACCACTGAAGAGGACCTCTCCATAGAC CTGTGTACTTGAAAACCACCGAAGAGGACCTCTCCATAGAC < 41bp 0.703677602012877 0.500931714654304 NA NA prediction 0.405491774717146 Functional Loss - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2652887 chr9:2652886 synonymous SNV . 0 20 hm7G_associated_SNPs_11718 0 0 1 1 1 VLDLR chr9:2652949 5'GT 2652949 Upstream 64bp 11087 chr17 5212059 5212059 1 + T C TGCT 5212060 + 5212040 5212080 41 TACGTGCACAACAGCAGCTTGAACAAGAATTTAATCAAAAG TACGTGCACAACAGCAGCTCGAACAAGAATTTAATCAAAAG < 41bp 0.704930226045363 0.502185780928049 NA NA prediction 0.405488890234627 Functional Loss - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5212060 chr17:5212059 synonymous SNV . 0 20 hm7G_associated_SNPs_11719 0 0 1 0 1 RABEP1 chr17:5211989 3'AG 5211989 Downstream 71bp 11088 chr17 42855137 42855137 1 + T C LUAD 42855138 + 42855118 42855158 41 ACAGCCTGCGGGCCTAACATGTTGTGCCTGGACCATCGCTG ACAGCCTGCGGGCCTAACACGTTGTGCCTGGACCATCGCTG < 41bp 0.727114454412776 0.524375885699063 NA NA prediction 0.405477137427426 Functional Loss - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855138 chr17:42855137 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_11720 0 0 0 0 2 ADAM11 chr17:42855063 3'AG 42855063 Downstream 75bp 11089 chr17 42855137 42855137 1 + T C LUAD 42855138 + 42855118 42855158 41 ACAGCCTGCGGGCCTAACATGTTGTGCCTGGACCATCGCTG ACAGCCTGCGGGCCTAACACGTTGTGCCTGGACCATCGCTG < 41bp 0.727114454412776 0.524375885699063 NA NA prediction 0.405477137427426 Functional Loss - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855138 chr17:42855137 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_11720 0 0 0 0 2 ADAM11 chr17:42855231 5'GT 42855231 Upstream 95bp 11090 chr3 14725878 14725878 1 + A G rs34230332 14725879 + 14725859 14725899 41 AGTGGCTACAGCAGCGGACAGTTGTGGAAAGGTGGGTACCT AGTGGCTACAGCAGCGGACGGTTGTGGAAAGGTGGGTACCT < 41bp 0.722819278968895 0.520087645811576 NA NA prediction 0.405463266314638 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14725879 chr3:14725878 nonsynonymous SNV 0.052 1 20 hm7G_associated_SNPs_11721 0 0 0 0 1 C3orf20 chr3:14725889 5'GT 14725889 Upstream 12bp 11091 chr17 65671596 65671596 1 + T C UCEC 65671597 + 65671577 65671617 41 CCTTCTTTTACTTTTTAGGTGGTCCGAGACATTCTGCTGAT CCTTCTTTTACTTTTTAGGCGGTCCGAGACATTCTGCTGAT < 41bp 0.728797856955937 0.526067471306436 NA NA prediction 0.405460771299002 Functional Loss - PITPNC1 ENSG00000154217 CDS Human protein_coding chr17:65671597 chr17:65671596 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_11722 0 0 1 0 2 PITPNC1 chr17:65671595 3'AG 65671595 Downstream 2bp 11092 chr17 65671596 65671596 1 + T C UCEC 65671597 + 65671577 65671617 41 CCTTCTTTTACTTTTTAGGTGGTCCGAGACATTCTGCTGAT CCTTCTTTTACTTTTTAGGCGGTCCGAGACATTCTGCTGAT < 41bp 0.728797856955937 0.526067471306436 NA NA prediction 0.405460771299002 Functional Loss - PITPNC1 ENSG00000154217 CDS Human protein_coding chr17:65671597 chr17:65671596 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_11722 0 0 1 0 2 PITPNC1 chr17:65671658 5'GT 65671658 Upstream 63bp 11093 chr16 67577323 67577323 1 + A G THYM 67577324 + 67577304 67577344 41 GCATGCCTTGGAGAGCTTCAGCTTCCTCAATGAAGACGAAG GCATGCCTTGGAGAGCTTCGGCTTCCTCAATGAAGACGAAG < 41bp 0.753417935532495 0.550689746048369 NA NA prediction 0.405456378968252 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67577324 chr16:67577323 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11725 0 0 1 0 3 RIPOR1 chr16:67577251 3'AG 67577251 Downstream 73bp 11094 chr16 67577323 67577323 1 + A G THYM 67577324 + 67577304 67577344 41 GCATGCCTTGGAGAGCTTCAGCTTCCTCAATGAAGACGAAG GCATGCCTTGGAGAGCTTCGGCTTCCTCAATGAAGACGAAG < 41bp 0.753417935532495 0.550689746048369 NA NA prediction 0.405456378968252 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67577324 chr16:67577323 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11725 0 0 1 0 3 RIPOR1 chr16:67577254 3'AG 67577254 Downstream 70bp 11095 chr16 67577323 67577323 1 + A G THYM 67577324 + 67577304 67577344 41 GCATGCCTTGGAGAGCTTCAGCTTCCTCAATGAAGACGAAG GCATGCCTTGGAGAGCTTCGGCTTCCTCAATGAAGACGAAG < 41bp 0.753417935532495 0.550689746048369 NA NA prediction 0.405456378968252 Functional Loss - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67577324 chr16:67577323 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11725 0 0 1 0 3 RIPOR1 chr16:67577372 5'GT 67577372 Upstream 50bp 11096 chr16 29997052 29997052 1 + A G HNSC 29997053 + 29997033 29997073 41 CGGCAGAAGGAGCAGCTCCAGCAGTGCCAGGCGGAGGAGGA CGGCAGAAGGAGCAGCTCCGGCAGTGCCAGGCGGAGGAGGA < 41bp 0.758245197368036 0.555517807775668 NA NA prediction 0.405454779184737 Functional Loss - TAOK2 ENSG00000149930 CDS Human protein_coding chr16:29997053 chr16:29997052 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_11726 0 0 1 0 1 TAOK2 chr16:29996979 3'AG 29996979 Downstream 74bp 11097 chr12 81647341 81647341 1 + T C UCEC 81647342 + 81647322 81647362 41 TTAGACAGAACATTGGCCCTGTGGCTGCTTTTCGAAATGCA TTAGACAGAACATTGGCCCCGTGGCTGCTTTTCGAAATGCA < 41bp 0.71047823486811 0.507760862588882 NA NA prediction 0.405434744558455 Functional Loss - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81647342 chr12:81647341 synonymous SNV . 0 20 hm7G_associated_SNPs_11727 0 0 0 0 1 ACSS3 chr12:81647274 3'AG 81647274 Downstream 68bp 11098 chr14 62194368 62194368 1 + T C rs113805602 62194369 + 62194349 62194389 41 TGAAATTTTCTTATTGTGATGAAAGGTAAATTAGATCTAAA TGAAATTTTCTTATTGTGACGAAAGGTAAATTAGATCTAAA < 41bp 0.710852904399652 0.508141745111933 NA NA prediction 0.405422318575438 Functional Loss - HIF1A ENSG00000100644 CDS Human protein_coding chr14:62194369 chr14:62194368 synonymous SNV . 0 20 hm7G_associated_SNPs_11728 0 0 0 0 1 HIF1A chr14:62194373 5'GT 62194373 Upstream 6bp 11099 chr8 87126017 87126017 1 + T G LUSC 87126018 + 87125998 87126038 41 CTCTTACTGTTTCCAAAATTGACACTGAGATGAGGAAAAGA CTCTTACTGTTTCCAAAATGGACACTGAGATGAGGAAAAGA < 41bp 0.900175293692379 0.697484770830597 NA NA prediction 0.405381045723565 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87126018 chr8:87126017 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11729 0 0 0 0 2 ATP6V0D2 chr8:87125938 3'AG 87125938 Downstream 80bp 11100 chr8 87126017 87126017 1 + T G LUSC 87126018 + 87125998 87126038 41 CTCTTACTGTTTCCAAAATTGACACTGAGATGAGGAAAAGA CTCTTACTGTTTCCAAAATGGACACTGAGATGAGGAAAAGA < 41bp 0.900175293692379 0.697484770830597 NA NA prediction 0.405381045723565 Functional Loss - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87126018 chr8:87126017 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11729 0 0 0 0 2 ATP6V0D2 chr8:87126109 5'GT 87126109 Upstream 93bp 11101 chr14 24030557 24030557 1 - T C KIRP 24030556 - 24030536 24030576 41 CCCATCTGGACCCCTCCCCAGGAGGTGCCCTGGTACACCTG CCCATCTGGACCCCTCCCCGGGAGGTGCCCTGGTACACCTG < 41bp 0.702690205836093 0.470503851105134 NA NA prediction 0.405380411672185 Functional Loss - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24030556 chr14:24030557 synonymous SNV . 0 20 hm7G_associated_SNPs_11730 0 0 1 0 1 AP1G2 chr14:24030640 3'AG 24030640 Downstream 84bp 11102 chr2 85863206 85863206 1 + T C COAD 85863207 + 85863187 85863227 41 GACTTTCTGTCTTGGTTTCTGAATGCTCTGCACTCAGCTCT GACTTTCTGTCTTGGTTTCCGAATGCTCTGCACTCAGCTCT < 41bp 0.737306424335956 0.534616343754735 NA NA prediction 0.405380161162443 Functional Loss - USP39 ENSG00000168883 CDS Human protein_coding chr2:85863207 chr2:85863206 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11731 0 0 1 0 1 USP39 chr2:85863176 3'AG 85863176 Downstream 31bp 11103 chr1 2519220 2519220 1 + A G LUSC 2519221 + 2519201 2519241 41 AGCAGCTTTACAAGGAGCTAGGCTTCAAGCGGTGAGTGGGG AGCAGCTTTACAAGGAGCTGGGCTTCAAGCGGTGAGTGGGG < 41bp 0.774525338036013 0.571843141656197 NA NA prediction 0.405364392759633 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2519221 chr1:2519220 synonymous SNV . 0 20 hm7G_associated_SNPs_11732 0 0 1 0 2 FAM213B chr1:2519180 3'AG 2519180 Downstream 41bp 11104 chr1 2519220 2519220 1 + A G LUSC 2519221 + 2519201 2519241 41 AGCAGCTTTACAAGGAGCTAGGCTTCAAGCGGTGAGTGGGG AGCAGCTTTACAAGGAGCTGGGCTTCAAGCGGTGAGTGGGG < 41bp 0.774525338036013 0.571843141656197 NA NA prediction 0.405364392759633 Functional Loss - FAM213B ENSG00000157870 CDS Human protein_coding chr1:2519221 chr1:2519220 synonymous SNV . 0 20 hm7G_associated_SNPs_11732 0 0 1 0 2 FAM213B chr1:2519231 5'GT 2519231 Upstream 12bp 11105 chr16 1396490 1396490 1 + T C STAD 1396491 + 1396471 1396511 41 AGCACATCAGTCTCTCGCCTGACTCCATCCAGAACGATGAG AGCACATCAGTCTCTCGCCCGACTCCATCCAGAACGATGAG < 41bp 0.702681906901045 0.494756838435216 NA NA prediction 0.40536381380209 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1396491 chr16:1396490 synonymous SNV . 0 20 hm7G_associated_SNPs_11733 0 0 1 0 2 BAIAP3 chr16:1396443 3'AG 1396443 Downstream 48bp 11106 chr16 1396490 1396490 1 + T C STAD 1396491 + 1396471 1396511 41 AGCACATCAGTCTCTCGCCTGACTCCATCCAGAACGATGAG AGCACATCAGTCTCTCGCCCGACTCCATCCAGAACGATGAG < 41bp 0.702681906901045 0.494756838435216 NA NA prediction 0.40536381380209 Functional Loss - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1396491 chr16:1396490 synonymous SNV . 0 20 hm7G_associated_SNPs_11733 0 0 1 0 2 BAIAP3 chr16:1396511 5'GT 1396511 Upstream 22bp 11107 chr3 100170730 100170730 1 + T C UCEC 100170731 + 100170711 100170751 41 GAAGATCCCATTCCAAAATTGAGAAATTTTCAGAGTCCTTT GAAGATCCCATTCCAAAATCGAGAAATTTTCAGAGTCCTTT < 41bp 0.727987822408499 0.525306642725989 NA NA prediction 0.40536235936502 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100170731 chr3:100170730 synonymous SNV . 0 20 hm7G_associated_SNPs_11734 0 0 0 0 1 LNP1 chr3:100170793 5'GT 100170793 Upstream 64bp 11108 chr7 103004751 103004751 1 + T C BRCA 103004752 + 103004732 103004772 41 TTGTACAGAAATACGTCGGTGAGGTAAAGTAAATTTATCAA TTGTACAGAAATACGTCGGCGAGGTAAAGTAAATTTATCAA < 41bp 0.705297116938383 0.502620200230862 NA NA prediction 0.405353833415041 Functional Loss - PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103004752 chr7:103004751 synonymous SNV . 0 20 hm7G_associated_SNPs_11735 0 0 1 0 1 PSMC2 chr7:103004754 5'GT 103004754 Upstream 4bp 11109 chr4 140275212 140275212 1 + T C OV 140275213 + 140275193 140275233 41 AAGAGTTAGTAGTAGGTTATGAAACCTCTCTAAAAAGCTGC AAGAGTTAGTAGTAGGTTACGAAACCTCTCTAAAAAGCTGC < 41bp 0.750661515499779 0.547997763926864 NA NA prediction 0.40532750314583 Functional Loss - NAA15 ENSG00000164134 CDS Human protein_coding chr4:140275213 chr4:140275212 synonymous SNV . 0 20 hm7G_associated_SNPs_11737 0 0 1 0 2 NAA15 chr4:140275180 3'AG 140275180 Downstream 33bp 11110 chr4 140275212 140275212 1 + T C OV 140275213 + 140275193 140275233 41 AAGAGTTAGTAGTAGGTTATGAAACCTCTCTAAAAAGCTGC AAGAGTTAGTAGTAGGTTACGAAACCTCTCTAAAAAGCTGC < 41bp 0.750661515499779 0.547997763926864 NA NA prediction 0.40532750314583 Functional Loss - NAA15 ENSG00000164134 CDS Human protein_coding chr4:140275213 chr4:140275212 synonymous SNV . 0 20 hm7G_associated_SNPs_11737 0 0 1 0 2 NAA15 chr4:140275252 5'GT 140275252 Upstream 41bp 11111 chr11 11941765 11941765 1 + T C rs35044288 11941766 + 11941746 11941786 41 GCCCAAATCAGTATTTTTGTGAACGTTGTAAGAAGAAGTGT GCCCAAATCAGTATTTTTGCGAACGTTGTAAGAAGAAGTGT < 41bp 0.740291657002345 0.537631922092904 NA NA prediction 0.405319469818883 Functional Loss - USP47 ENSG00000170242 CDS Human protein_coding chr11:11941766 chr11:11941765 synonymous SNV . 0 20 hm7G_associated_SNPs_11738 0 0 1 0 2 USP47 chr11:11941703 3'AG 11941703 Downstream 63bp 11112 chr11 11941765 11941765 1 + T C rs35044288 11941766 + 11941746 11941786 41 GCCCAAATCAGTATTTTTGTGAACGTTGTAAGAAGAAGTGT GCCCAAATCAGTATTTTTGCGAACGTTGTAAGAAGAAGTGT < 41bp 0.740291657002345 0.537631922092904 NA NA prediction 0.405319469818883 Functional Loss - USP47 ENSG00000170242 CDS Human protein_coding chr11:11941766 chr11:11941765 synonymous SNV . 0 20 hm7G_associated_SNPs_11738 0 0 1 0 2 USP47 chr11:11941798 5'GT 11941798 Upstream 34bp 11113 chr11 74883562 74883562 1 + A G UCEC 74883563 + 74883543 74883583 41 ATGCCCAAGGAAAAACGTGAGCTTCAGTTTCGGCGAAAGGT ATGCCCAAGGAAAAACGTGGGCTTCAGTTTCGGCGAAAGGT < 41bp 0.743848122011151 0.541189179144784 NA NA prediction 0.405317885732732 Functional Loss - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74883563 chr11:74883562 nonsynonymous SNV 0.364 1 20 hm7G_associated_SNPs_11740 0 0 0 0 1 SLCO2B1 chr11:74883614 5'GT 74883614 Upstream 53bp 11114 chr10 26505740 26505740 1 + T C SARC 26505741 + 26505721 26505761 41 CTCCAGTCTCCAAAGCCGATGGCATCTCCGGGCTCTGGCTT CTCCAGTCTCCAAAGCCGACGGCATCTCCGGGCTCTGGCTT < 41bp 0.702658507458188 0.499107413868644 NA NA prediction 0.405317014916376 Functional Loss - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26505741 chr10:26505740 nonsynonymous SNV 0.705 4 20 hm7G_associated_SNPs_11741 0 0 0 0 1 GAD2 chr10:26505814 5'GT 26505814 Upstream 75bp 11115 chr3 38316203 38316203 1 + T C KIRP 38316204 + 38316184 38316224 41 ACATGGCCCTGCGCTTTGCTGTGGCTACTGCCGTCGCTGGA ACATGGCCCTGCGCTTTGCCGTGGCTACTGCCGTCGCTGGA < 41bp 0.720878917606335 0.51823231381128 NA NA prediction 0.405293207590111 Functional Loss - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38316204 chr3:38316203 synonymous SNV . 0 20 hm7G_associated_SNPs_11742 0 0 0 0 1 SLC22A13 chr3:38316249 5'GT 38316249 Upstream 47bp 11116 chr2 171704272 171704272 1 + T C UCEC 171704273 + 171704253 171704293 41 AAGAGATTGCAGATATATGTGAGAAATATAACCTTTGGTTG AAGAGATTGCAGATATATGCGAGAAATATAACCTTTGGTTG < 41bp 0.722407294794775 0.519761890615751 NA NA prediction 0.405290808358047 Functional Loss - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171704273 chr2:171704272 synonymous SNV . 0 20 hm7G_associated_SNPs_11743 0 0 0 0 2 GAD1 chr2:171704186 3'AG 171704186 Downstream 87bp 11117 chr2 171704272 171704272 1 + T C UCEC 171704273 + 171704253 171704293 41 AAGAGATTGCAGATATATGTGAGAAATATAACCTTTGGTTG AAGAGATTGCAGATATATGCGAGAAATATAACCTTTGGTTG < 41bp 0.722407294794775 0.519761890615751 NA NA prediction 0.405290808358047 Functional Loss - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171704273 chr2:171704272 synonymous SNV . 0 20 hm7G_associated_SNPs_11743 0 0 0 0 2 GAD1 chr2:171704302 5'GT 171704302 Upstream 31bp 11118 chr1 153749571 153749571 1 + A G LIHC 153749572 + 153749552 153749592 41 GCTCGGATCAGTCATCTGAAGATCCTGCAATGCCAGGGCTT GCTCGGATCAGTCATCTGAGGATCCTGCAATGCCAGGGCTT < 41bp 0.702644501629066 0.481656807120048 NA NA prediction 0.405289003258132 Functional Loss - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153749572 chr1:153749571 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_11744 0 0 0 0 1 SLC27A3 chr1:153749538 3'AG 153749538 Downstream 34bp 11119 chr17 55079451 55079451 1 + T C LIHC 55079452 + 55079432 55079472 41 CAGCTGAAGTGGAAGGCCCTGTACAGTGACCCTAAATCTTT CAGCTGAAGTGGAAGGCCCCGTACAGTGACCCTAAATCTTT < 41bp 0.71970263330602 0.517058789592982 NA NA prediction 0.405287687426077 Functional Loss - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55079452 chr17:55079451 nonsynonymous SNV 0.922 4 20 hm7G_associated_SNPs_11745 0 0 1 0 2 SCPEP1 chr17:55079379 3'AG 55079379 Downstream 73bp 11120 chr17 55079451 55079451 1 + T C LIHC 55079452 + 55079432 55079472 41 CAGCTGAAGTGGAAGGCCCTGTACAGTGACCCTAAATCTTT CAGCTGAAGTGGAAGGCCCCGTACAGTGACCCTAAATCTTT < 41bp 0.71970263330602 0.517058789592982 NA NA prediction 0.405287687426077 Functional Loss - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55079452 chr17:55079451 nonsynonymous SNV 0.922 4 20 hm7G_associated_SNPs_11745 0 0 1 0 2 SCPEP1 chr17:55079542 5'GT 55079542 Upstream 92bp 11121 chr14 73637683 73637683 1 + T C STAD 73637684 + 73637664 73637704 41 ATCATGCTCTTTGTCCCTGTGACTCTCTGCATGGTGGTGGT ATCATGCTCTTTGTCCCTGCGACTCTCTGCATGGTGGTGGT < 41bp 0.748078414243139 0.545435510691445 NA NA prediction 0.405285807103388 Functional Loss - PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637684 chr14:73637683 nonsynonymous SNV 0.981 5 20 hm7G_associated_SNPs_11746 0 0 1 0 1 PSEN1 chr14:73637755 5'GT 73637755 Upstream 73bp 11122 chr19 46815499 46815499 1 + T C rs8101480 46815500 + 46815480 46815520 41 TCCACGCGCTGGACTCCGATGCGGTCAGCAAGAGCATCCAC TCCACGCGCTGGACTCCGACGCGGTCAGCAAGAGCATCCAC < 41bp 0.702641078049006 0.487005472455022 NA NA prediction 0.405282156098012 Functional Loss - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46815500 chr19:46815499 synonymous SNV . 0 20 hm7G_associated_SNPs_11748 0 0 0 0 2 HIF3A chr19:46815418 3'AG 46815418 Downstream 82bp 11123 chr19 46815499 46815499 1 + T C rs8101480 46815500 + 46815480 46815520 41 TCCACGCGCTGGACTCCGATGCGGTCAGCAAGAGCATCCAC TCCACGCGCTGGACTCCGACGCGGTCAGCAAGAGCATCCAC < 41bp 0.702641078049006 0.487005472455022 NA NA prediction 0.405282156098012 Functional Loss - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46815500 chr19:46815499 synonymous SNV . 0 20 hm7G_associated_SNPs_11748 0 0 0 0 2 HIF3A chr19:46815524 5'GT 46815524 Upstream 26bp 11124 chr2 48018069 48018069 1 + T C UCEC 48018070 + 48018050 48018090 41 TTCCTTTTGGCAACAGTTGTGACTTCTCACCAGGAGATTTG TTCCTTTTGGCAACAGTTGCGACTTCTCACCAGGAGATTTG < 41bp 0.739328412120611 0.536693083687363 NA NA prediction 0.405270656866495 Functional Loss - MSH6 ENSG00000116062 CDS Human protein_coding chr2:48018070 chr2:48018069 synonymous SNV . 0 20 hm7G_associated_SNPs_11749 0 0 1 0 1 MSH6 chr2:48018066 3'AG 48018066 Downstream 4bp 11125 chr4 57861439 57861439 1 + T C UCEC 57861440 + 57861420 57861460 41 CTGATTGCCCAAGAGAAAATGGCAACAAACACAGTTTATGT CTGATTGCCCAAGAGAAAACGGCAACAAACACAGTTTATGT < 41bp 0.709705942859955 0.50708381970561 NA NA prediction 0.405244246308691 Functional Loss - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57861440 chr4:57861439 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11750 0 0 1 0 1 POLR2B chr4:57861417 3'AG 57861417 Downstream 23bp 11126 chr16 84203492 84203492 1 + A G COAD 84203493 + 84203473 84203513 41 ACATCTTCAGATGATGGTGAGAATGTGCCCGCCAGTGCGGA ACATCTTCAGATGATGGTGGGAATGTGCCCGCCAGTGCGGA < 41bp 0.719169776371759 0.516556477150171 NA NA prediction 0.405226598443176 Functional Loss - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84203493 chr16:84203492 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_11752 0 0 0 0 1 DNAAF1 chr16:84203465 3'AG 84203465 Downstream 28bp 11127 chr2 201457892 201457892 1 + T C UCEC 201457893 + 201457873 201457913 41 TAGAAAAAAATGTCGATCCTGAAACAATGCTGTTGCCTTAT TAGAAAAAAATGTCGATCCCGAAACAATGCTGTTGCCTTAT < 41bp 0.72060613560593 0.518001894215421 NA NA prediction 0.405208482781019 Functional Loss - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201457893 chr2:201457892 synonymous SNV . 0 20 hm7G_associated_SNPs_11753 0 0 0 0 1 AOX1 chr2:201457869 3'AG 201457869 Downstream 24bp 11128 chr3 42568929 42568929 1 + T C rs2229722 42568930 + 42568910 42568950 41 TGAAGACCGGCTACACCATTGGCTACGGCCTGTCCCTCGCC TGAAGACCGGCTACACCATCGGCTACGGCCTGTCCCTCGCC < 41bp 0.710221743972771 0.507629369240947 NA NA prediction 0.405184749463647 Functional Loss - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42568930 chr3:42568929 synonymous SNV . 0 20 hm7G_associated_SNPs_11755 0 0 0 0 3 VIPR1 chr3:42568885 3'AG 42568885 Downstream 45bp 11129 chr3 42568929 42568929 1 + T C rs2229722 42568930 + 42568910 42568950 41 TGAAGACCGGCTACACCATTGGCTACGGCCTGTCCCTCGCC TGAAGACCGGCTACACCATCGGCTACGGCCTGTCCCTCGCC < 41bp 0.710221743972771 0.507629369240947 NA NA prediction 0.405184749463647 Functional Loss - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42568930 chr3:42568929 synonymous SNV . 0 20 hm7G_associated_SNPs_11755 0 0 0 0 3 VIPR1 chr3:42568888 3'AG 42568888 Downstream 42bp 11130 chr3 42568929 42568929 1 + T C rs2229722 42568930 + 42568910 42568950 41 TGAAGACCGGCTACACCATTGGCTACGGCCTGTCCCTCGCC TGAAGACCGGCTACACCATCGGCTACGGCCTGTCCCTCGCC < 41bp 0.710221743972771 0.507629369240947 NA NA prediction 0.405184749463647 Functional Loss - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42568930 chr3:42568929 synonymous SNV . 0 20 hm7G_associated_SNPs_11755 0 0 0 0 3 VIPR1 chr3:42568988 5'GT 42568988 Upstream 60bp 11131 chr11 64695569 64695569 1 + A G UCEC 64695570 + 64695550 64695590 41 TTTTTCCTGCGTTTCTTGGAGAGCCCAGACTTCCAGCCCTC TTTTTCCTGCGTTTCTTGGGGAGCCCAGACTTCCAGCCCTC < 41bp 0.702584403057345 0.498039187047212 NA NA prediction 0.40516880611469 Functional Loss - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64695570 chr11:64695569 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_11756 0 0 0 0 2 PPP2R5B chr11:64695538 3'AG 64695538 Downstream 32bp 11132 chr11 64695569 64695569 1 + A G UCEC 64695570 + 64695550 64695590 41 TTTTTCCTGCGTTTCTTGGAGAGCCCAGACTTCCAGCCCTC TTTTTCCTGCGTTTCTTGGGGAGCCCAGACTTCCAGCCCTC < 41bp 0.702584403057345 0.498039187047212 NA NA prediction 0.40516880611469 Functional Loss - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64695570 chr11:64695569 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_11756 0 0 0 0 2 PPP2R5B chr11:64695630 5'GT 64695630 Upstream 62bp 11133 chr20 37620999 37620999 1 + T C STAD 37621000 + 37620980 37621020 41 GCTTCTCTTTGATTCTTAGTGTCATCATGCTGGATGAAGCC GCTTCTCTTTGATTCTTAGCGTCATCATGCTGGATGAAGCC < 41bp 0.703166356619105 0.500582567122283 NA NA prediction 0.405167578993645 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37621000 chr20:37620999 synonymous SNV . 0 20 hm7G_associated_SNPs_11757 0 0 1 0 2 DHX35 chr20:37620999 5'GT 37620999 Upstream 1bp 11134 chr20 37620999 37620999 1 + T C STAD 37621000 + 37620980 37621020 41 GCTTCTCTTTGATTCTTAGTGTCATCATGCTGGATGAAGCC GCTTCTCTTTGATTCTTAGCGTCATCATGCTGGATGAAGCC < 41bp 0.703166356619105 0.500582567122283 NA NA prediction 0.405167578993645 Functional Loss - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37621000 chr20:37620999 synonymous SNV . 0 20 hm7G_associated_SNPs_11757 0 0 1 0 2 DHX35 chr20:37621068 5'GT 37621068 Upstream 70bp 11135 chr3 15253637 15253637 1 + T C UCEC 15253638 + 15253618 15253658 41 CACAAGCCTTAATTTATGCTGAGATGGCAGGATCAAGCCTA CACAAGCCTTAATTTATGCCGAGATGGCAGGATCAAGCCTA < 41bp 0.721226273813857 0.51865205414596 NA NA prediction 0.405148439335793 Functional Loss - CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15253638 chr3:15253637 synonymous SNV . 0 20 hm7G_associated_SNPs_11758 0 0 1 0 2 CAPN7 chr3:15253611 3'AG 15253611 Downstream 27bp 11136 chr3 15253637 15253637 1 + T C UCEC 15253638 + 15253618 15253658 41 CACAAGCCTTAATTTATGCTGAGATGGCAGGATCAAGCCTA CACAAGCCTTAATTTATGCCGAGATGGCAGGATCAAGCCTA < 41bp 0.721226273813857 0.51865205414596 NA NA prediction 0.405148439335793 Functional Loss - CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15253638 chr3:15253637 synonymous SNV . 0 20 hm7G_associated_SNPs_11758 0 0 1 0 2 CAPN7 chr3:15253719 5'GT 15253719 Upstream 83bp 11137 chr18 61465873 61465873 1 + A G STAD 61465874 + 61465854 61465894 41 GATTGGTGAAGGTGGCATAAGCTCATCTGCTGTAATGGTGC GATTGGTGAAGGTGGCATAGGCTCATCTGCTGTAATGGTGC < 41bp 0.72088663733869 0.518314513141077 NA NA prediction 0.405144248395225 Functional Loss - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61465874 chr18:61465873 nonsynonymous SNV 0.245 0 20 hm7G_associated_SNPs_11759 0 0 0 0 1 SERPINB7 chr18:61465838 3'AG 61465838 Downstream 36bp 11138 chr9 134314409 134314409 1 + T C UCEC 134314410 + 134314390 134314430 41 GCCAGGTGGACCAAAGTCATGGGCACAGCTGAATGGAAAGC GCCAGGTGGACCAAAGTCACGGGCACAGCTGAATGGAAAGC < 41bp 0.738326751303993 0.535757164831396 NA NA prediction 0.405139172945193 Functional Loss - PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134314410 chr9:134314409 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11760 0 0 1 0 2 PRRC2B chr9:134314376 3'AG 134314376 Downstream 34bp 11139 chr9 134314409 134314409 1 + T C UCEC 134314410 + 134314390 134314430 41 GCCAGGTGGACCAAAGTCATGGGCACAGCTGAATGGAAAGC GCCAGGTGGACCAAAGTCACGGGCACAGCTGAATGGAAAGC < 41bp 0.738326751303993 0.535757164831396 NA NA prediction 0.405139172945193 Functional Loss - PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134314410 chr9:134314409 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11760 0 0 1 0 2 PRRC2B chr9:134314448 5'GT 134314448 Upstream 40bp 11140 chr1 155150983 155150983 1 + T G GBM 155150984 + 155150964 155151004 41 CCAGGATTGCCCGAGCCACTGAAGCCCTCCAGACATTCCGG CCAGGATTGCCCGAGCCACGGAAGCCCTCCAGACATTCCGG < 41bp 0.702561810405282 0.360798569151293 NA NA prediction 0.405123620810565 Functional Loss - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155150984 chr1:155150983 synonymous SNV . 0 20 hm7G_associated_SNPs_11761 0 0 0 0 1 TRIM46 chr1:155150968 3'AG 155150968 Downstream 16bp 11141 chr7 44099661 44099661 1 + T C LUSC 44099662 + 44099642 44099682 41 GGCAGGTGCAGCAGCAAGGTGCTGGCTCTGAGCACATTGAC GGCAGGTGCAGCAGCAAGGCGCTGGCTCTGAGCACATTGAC < 41bp 0.708933958011214 0.506372152305687 NA NA prediction 0.405123611411054 Functional Loss - DBNL ENSG00000136279 CDS Human protein_coding chr7:44099662 chr7:44099661 synonymous SNV . 0 20 hm7G_associated_SNPs_11762 0 0 1 0 2 DBNL chr7:44099647 3'AG 44099647 Downstream 15bp 11142 chr7 44099661 44099661 1 + T C LUSC 44099662 + 44099642 44099682 41 GGCAGGTGCAGCAGCAAGGTGCTGGCTCTGAGCACATTGAC GGCAGGTGCAGCAGCAAGGCGCTGGCTCTGAGCACATTGAC < 41bp 0.708933958011214 0.506372152305687 NA NA prediction 0.405123611411054 Functional Loss - DBNL ENSG00000136279 CDS Human protein_coding chr7:44099662 chr7:44099661 synonymous SNV . 0 20 hm7G_associated_SNPs_11762 0 0 1 0 2 DBNL chr7:44099752 5'GT 44099752 Upstream 92bp 11143 chr20 47567913 47567913 1 + T C UCEC 47567914 + 47567894 47567934 41 CCCCTGACAGTGGAGCCCCTGGGAAGCGGCTGATCGACAGA CCCCTGACAGTGGAGCCCCCGGGAAGCGGCTGATCGACAGA < 41bp 0.74887294779143 0.546321265279585 NA NA prediction 0.405103365023689 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47567914 chr20:47567913 synonymous SNV . 0 20 hm7G_associated_SNPs_11763 0 0 1 0 2 ARFGEF2 chr20:47567860 3'AG 47567860 Downstream 54bp 11144 chr20 47567913 47567913 1 + T C UCEC 47567914 + 47567894 47567934 41 CCCCTGACAGTGGAGCCCCTGGGAAGCGGCTGATCGACAGA CCCCTGACAGTGGAGCCCCCGGGAAGCGGCTGATCGACAGA < 41bp 0.74887294779143 0.546321265279585 NA NA prediction 0.405103365023689 Functional Loss - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47567914 chr20:47567913 synonymous SNV . 0 20 hm7G_associated_SNPs_11763 0 0 1 0 2 ARFGEF2 chr20:47568006 5'GT 47568006 Upstream 94bp 11145 chr3 41277935 41277935 1 + T C UCEC 41277936 + 41277916 41277956 41 CTGCAGAAGCTATTGAAGCTGAGGGAGCCACAGCTCCTCTG CTGCAGAAGCTATTGAAGCCGAGGGAGCCACAGCTCCTCTG < 41bp 0.759124806908135 0.556581014514563 NA NA prediction 0.405087584787145 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41277936 chr3:41277935 synonymous SNV . 0 20 hm7G_associated_SNPs_11764 0 0 1 0 2 CTNNB1 chr3:41277840 3'AG 41277840 Downstream 96bp 11146 chr3 41277935 41277935 1 + T C UCEC 41277936 + 41277916 41277956 41 CTGCAGAAGCTATTGAAGCTGAGGGAGCCACAGCTCCTCTG CTGCAGAAGCTATTGAAGCCGAGGGAGCCACAGCTCCTCTG < 41bp 0.759124806908135 0.556581014514563 NA NA prediction 0.405087584787145 Functional Loss - CTNNB1 ENSG00000168036 CDS Human protein_coding chr3:41277936 chr3:41277935 synonymous SNV . 0 20 hm7G_associated_SNPs_11764 0 0 1 0 2 CTNNB1 chr3:41277990 5'GT 41277990 Upstream 56bp 11147 chr18 2847857 2847857 1 + A G LIHC 2847858 + 2847838 2847878 41 GTGAGCTGCTCCGTGCTGGAGGGAAGTGAGAGTTTTATTCA GTGAGCTGCTCCGTGCTGGGGGGAAGTGAGAGTTTTATTCA < 41bp 0.739872541233758 0.537342602552183 NA NA prediction 0.405059877363151 Functional Loss - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2847858 chr18:2847857 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11767 0 0 0 0 2 EMILIN2 chr18:2847807 3'AG 2847807 Downstream 51bp 11148 chr18 2847857 2847857 1 + A G LIHC 2847858 + 2847838 2847878 41 GTGAGCTGCTCCGTGCTGGAGGGAAGTGAGAGTTTTATTCA GTGAGCTGCTCCGTGCTGGGGGGAAGTGAGAGTTTTATTCA < 41bp 0.739872541233758 0.537342602552183 NA NA prediction 0.405059877363151 Functional Loss - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2847858 chr18:2847857 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11767 0 0 0 0 2 EMILIN2 chr18:2847929 5'GT 2847929 Upstream 73bp 11149 chr12 121437382 121437382 1 + A G rs1169305 121437383 + 121437363 121437403 41 CCCCAGCCAGGACCCTGCCAGCATCCAGCACCTGCAGCCGG CCCCAGCCAGGACCCTGCCGGCATCCAGCACCTGCAGCCGG < 41bp 0.767997517881361 0.565468602765351 NA NA prediction 0.40505783023202 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437383 chr12:121437382 nonsynonymous SNV 0.047 1 20 hm7G_associated_SNPs_11768 4 0 0 0 2 HNF1A chr12:121437286 3'AG 121437286 Downstream 97bp 11150 chr12 121437382 121437382 1 + A G rs1169305 121437383 + 121437363 121437403 41 CCCCAGCCAGGACCCTGCCAGCATCCAGCACCTGCAGCCGG CCCCAGCCAGGACCCTGCCGGCATCCAGCACCTGCAGCCGG < 41bp 0.767997517881361 0.565468602765351 NA NA prediction 0.40505783023202 Functional Loss - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437383 chr12:121437382 nonsynonymous SNV 0.047 1 20 hm7G_associated_SNPs_11768 4 0 0 0 2 HNF1A chr12:121437430 5'GT 121437430 Upstream 49bp 11151 chr11 68337299 68337299 1 + T C OV 68337300 + 68337280 68337320 41 TGATTCTTGCAAGTCCTTTTGAAAACACAGAAAATGCCACA TGATTCTTGCAAGTCCTTTCGAAAACACAGAAAATGCCACA < 41bp 0.735275342791362 0.532748986075243 NA NA prediction 0.405052713432238 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68337300 chr11:68337299 synonymous SNV . 0 20 hm7G_associated_SNPs_11769 0 0 1 0 2 PPP6R3 chr11:68337216 3'AG 68337216 Downstream 84bp 11152 chr11 68337299 68337299 1 + T C OV 68337300 + 68337280 68337320 41 TGATTCTTGCAAGTCCTTTTGAAAACACAGAAAATGCCACA TGATTCTTGCAAGTCCTTTCGAAAACACAGAAAATGCCACA < 41bp 0.735275342791362 0.532748986075243 NA NA prediction 0.405052713432238 Functional Loss - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68337300 chr11:68337299 synonymous SNV . 0 20 hm7G_associated_SNPs_11769 0 0 1 0 2 PPP6R3 chr11:68337365 5'GT 68337365 Upstream 67bp 11153 chr12 123340573 123340573 1 + A G HNSC 123340574 + 123340554 123340594 41 AGCCAGGTGAATGCACTGGAGGGTGAGCTGGAGGAGCAGCG AGCCAGGTGAATGCACTGGGGGGTGAGCTGGAGGAGCAGCG < 41bp 0.760096385352862 0.557575818305184 NA NA prediction 0.405041134095355 Functional Loss - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123340574 chr12:123340573 nonsynonymous SNV 0.247 4 20 hm7G_associated_SNPs_11770 0 0 1 0 1 HIP1R chr12:123340527 3'AG 123340527 Downstream 47bp 11154 chr4 6578343 6578343 1 + A G COAD 6578344 + 6578324 6578364 41 CCGCCAATGTCTACACCTCAGTGGTGGAAGAGCTGGCCCGC CCGCCAATGTCTACACCTCGGTGGTGGAAGAGCTGGCCCGC < 41bp 0.702501396699926 0.484282777591353 NA NA prediction 0.405002793399852 Functional Loss - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6578344 chr4:6578343 synonymous SNV . 0 20 hm7G_associated_SNPs_11773 0 0 1 0 1 MAN2B2 chr4:6578305 3'AG 6578305 Downstream 39bp 11155 chr1 33117636 33117636 1 + T C STAD 33117637 + 33117617 33117657 41 TGGAGTGGCCCAGCCTAACTGCCCAGTGGCTTCCAGATGTA TGGAGTGGCCCAGCCTAACCGCCCAGTGGCTTCCAGATGTA < 41bp 0.721978880939239 0.519480251639074 NA NA prediction 0.404997258600331 Functional Loss - RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33117637 chr1:33117636 synonymous SNV . 0 20 hm7G_associated_SNPs_11775 0 0 1 0 1 RBBP4 chr1:33117662 5'GT 33117662 Upstream 27bp 11156 chr20 1896096 1896096 1 + T C UCEC 1896097 + 1896077 1896117 41 GCAGGCACTGAGCTGTCTGTGCGCGGTGAGTACAGCGTGGG GCAGGCACTGAGCTGTCTGCGCGCGGTGAGTACAGCGTGGG < 41bp 0.702478134213202 0.490825033539893 NA NA prediction 0.404956268426404 Functional Loss - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1896097 chr20:1896096 nonsynonymous SNV 0.030 4 20 hm7G_associated_SNPs_11779 0 0 0 0 1 SIRPA chr20:1896101 5'GT 1896101 Upstream 6bp 11157 chr3 52513791 52513791 1 + A G LIHC 52513792 + 52513772 52513812 41 TGGATGACACAGTGACCACAGAGAAGGAGCTGGACACTGTG TGGATGACACAGTGACCACGGAGAAGGAGCTGGACACTGTG < 41bp 0.702470252102863 0.498039522264581 NA NA prediction 0.404940504205727 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52513792 chr3:52513791 synonymous SNV . 0 20 hm7G_associated_SNPs_11781 0 0 1 0 2 NISCH chr3:52513765 3'AG 52513765 Downstream 27bp 11158 chr3 52513791 52513791 1 + A G LIHC 52513792 + 52513772 52513812 41 TGGATGACACAGTGACCACAGAGAAGGAGCTGGACACTGTG TGGATGACACAGTGACCACGGAGAAGGAGCTGGACACTGTG < 41bp 0.702470252102863 0.498039522264581 NA NA prediction 0.404940504205727 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52513792 chr3:52513791 synonymous SNV . 0 20 hm7G_associated_SNPs_11781 0 0 1 0 2 NISCH chr3:52513878 5'GT 52513878 Upstream 88bp 11159 chr16 57099176 57099176 1 + T C LUSC 57099177 + 57099157 57099197 41 TCTCTCCCTGTTAGAAGTCTGCGCCCAGGCCTCAGGCAGTG TCTCTCCCTGTTAGAAGTCCGCGCCCAGGCCTCAGGCAGTG < 41bp 0.735581172015187 0.533110937681738 NA NA prediction 0.404940468666898 Functional Loss - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57099177 chr16:57099176 nonsynonymous SNV 0.650 1 20 hm7G_associated_SNPs_11782 0 0 0 0 1 NLRC5 chr16:57099210 5'GT 57099210 Upstream 35bp 11160 chr2 209138426 209138426 1 + T C COAD 209138427 + 209138407 209138447 41 CTTATAAAAAGCAGCTTAATGAGGAACTCCAGCGGCGCTCT CTTATAAAAAGCAGCTTAACGAGGAACTCCAGCGGCGCTCT < 41bp 0.707584471656009 0.505119290942788 NA NA prediction 0.404930361426443 Functional Loss - PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209138427 chr2:209138426 synonymous SNV . 0 20 hm7G_associated_SNPs_11785 0 0 1 0 1 PIKFYVE chr2:209138457 5'GT 209138457 Upstream 32bp 11161 chr12 58168522 58168522 1 + T G COAD 58168523 + 58168503 58168543 41 CATGTCTACCATGACTCCCTGGGAATCCATCAAGGGAAGCT CATGTCTACCATGACTCCCGGGGAATCCATCAAGGGAAGCT < 41bp 0.702464299331734 0.378156676598964 NA NA prediction 0.404928598663469 Functional Loss - EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58168523 chr12:58168522 nonsynonymous SNV 0.016 0 20 hm7G_associated_SNPs_11786 0 0 0 0 1 EEF1AKMT3 chr12:58168550 5'GT 58168550 Upstream 29bp 11162 chr5 68716291 68716291 1 + T C rs146011285 68716292 + 68716272 68716312 41 GTTTATCTCATTAGTGCTTTGGTTTGCCTAAAGTTATGGAG GTTTATCTCATTAGTGCTTCGGTTTGCCTAAAGTTATGGAG < 41bp 0.70244982190401 0.491657265664029 NA NA prediction 0.404899643808019 Functional Loss - MARVELD2 ENSG00000152939 CDS Human protein_coding chr5:68716292 chr5:68716291 nonsynonymous SNV 0.723 1 20 hm7G_associated_SNPs_11791 0 0 1 0 2 MARVELD2 chr5:68716286 3'AG 68716286 Downstream 6bp 11163 chr5 68716291 68716291 1 + T C rs146011285 68716292 + 68716272 68716312 41 GTTTATCTCATTAGTGCTTTGGTTTGCCTAAAGTTATGGAG GTTTATCTCATTAGTGCTTCGGTTTGCCTAAAGTTATGGAG < 41bp 0.70244982190401 0.491657265664029 NA NA prediction 0.404899643808019 Functional Loss - MARVELD2 ENSG00000152939 CDS Human protein_coding chr5:68716292 chr5:68716291 nonsynonymous SNV 0.723 1 20 hm7G_associated_SNPs_11791 0 0 1 0 2 MARVELD2 chr5:68716358 5'GT 68716358 Upstream 68bp 11164 chr11 64990066 64990066 1 + A G GBM 64990067 + 64990047 64990087 41 GGGGAAAGGCTGACCAAGGAGGTAAGCGAGCTGGGAGGAAG GGGGAAAGGCTGACCAAGGGGGTAAGCGAGCTGGGAGGAAG < 41bp 0.745219884642203 0.54277092314493 NA NA prediction 0.404897922994544 Functional Loss - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64990067 chr11:64990066 . . 0 20 hm7G_associated_SNPs_11793 0 0 0 0 1 SLC22A20 chr11:64990067 5'GT 64990067 Upstream 2bp 11165 chr6 148867254 148867254 1 + A G COAD 148867255 + 148867235 148867275 41 ATGGACCAGATCCGGGTGAAGCAGCTTCGGAAGCAGCACCG ATGGACCAGATCCGGGTGAGGCAGCTTCGGAAGCAGCACCG < 41bp 0.702448116056926 0.49758770171851 NA NA prediction 0.404896232113851 Functional Loss - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148867255 chr6:148867254 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11794 0 0 0 0 1 SASH1 chr6:148867282 5'GT 148867282 Upstream 29bp 11166 chr11 36119935 36119935 1 + T C GBM 36119936 + 36119916 36119956 41 GCAAGAACGGCCTCTGTATTGACAAGAGCTTCATCTGCGAT GCAAGAACGGCCTCTGTATCGACAAGAGCTTCATCTGCGAT < 41bp 0.702435861763145 0.490940573971886 NA NA prediction 0.40487172352629 Functional Loss - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36119936 chr11:36119935 synonymous SNV . 0 20 hm7G_associated_SNPs_11796 0 0 1 0 1 LDLRAD3 chr11:36120011 5'GT 36120011 Upstream 77bp 11167 chr8 68084681 68084681 1 + T C UCEC 68084682 + 68084662 68084702 41 GGAATCCCATGGATATATTTGATATGGCTAGACATCGGTTG GGAATCCCATGGATATATTCGATATGGCTAGACATCGGTTG < 41bp 0.723625558690584 0.521193943278695 NA NA prediction 0.404863230823777 Functional Loss - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68084682 chr8:68084681 synonymous SNV . 0 20 hm7G_associated_SNPs_11797 0 0 0 0 1 CSPP1 chr8:68084651 3'AG 68084651 Downstream 31bp 11168 chr19 15784472 15784472 1 + T C rs200416877 15784473 + 15784453 15784493 41 CTATGCCTTCTATAACAACTGCCGCCGGCTCCAGTGTTTCC CTATGCCTTCTATAACAACCGCCGCCGGCTCCAGTGTTTCC < 41bp 0.709099999418143 0.506673904592699 NA NA prediction 0.404852189650886 Functional Loss - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15784473 chr19:15784472 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_11798 0 0 0 0 1 CYP4F12 chr19:15784537 5'GT 15784537 Upstream 66bp 11169 chr9 135940600 135940600 1 + A G SKCM 135940601 + 135940581 135940621 41 CGGCCCCCTTGGGTTCCTCAGCACTGGGGACGCCAATCTGC CGGCCCCCTTGGGTTCCTCGGCACTGGGGACGCCAATCTGC < 41bp 0.791760780471657 0.589335294179124 NA NA prediction 0.404850972585065 Functional Loss - CEL ENSG00000170835 CDS Human protein_coding chr9:135940601 chr9:135940600 nonsynonymous SNV 0.926 4 20 hm7G_associated_SNPs_11799 0 0 1 0 1 CEL chr9:135940624 5'GT 135940624 Upstream 25bp 11170 chr17 27067964 27067964 1 + A G UCEC 27067965 + 27067945 27067985 41 GGACCAGGAGCCTCTGCTGAGTATAGACCTGGGCACTGCTC GGACCAGGAGCCTCTGCTGGGTATAGACCTGGGCACTGCTC < 41bp 0.747489080027251 0.545069805099665 NA NA prediction 0.404838549855173 Functional Loss - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27067965 chr17:27067964 nonsynonymous SNV 0.932 1 20 hm7G_associated_SNPs_11801 0 0 1 0 1 NEK8 chr17:27068003 5'GT 27068003 Upstream 40bp 11171 chrX 119048816 119048816 1 + T C UCEC 119048817 + 119048797 119048837 41 GCTGGTACCTACTTCACCATGAAGGTCTCCAAAACCAAACC GCTGGTACCTACTTCACCACGAAGGTCTCCAAAACCAAACC < 41bp 0.716042681210348 0.513633992077419 NA NA prediction 0.404817378265858 Functional Loss - AKAP14 ENSG00000186471 CDS Human protein_coding chrX:119048817 chrX:119048816 nonsynonymous SNV 0.170 1 20 hm7G_associated_SNPs_11803 0 0 0 0 1 AKAP14 chrX:119048841 5'GT 119048841 Upstream 26bp 11172 chr2 187533593 187533593 1 + T C UCEC 187533594 + 187533574 187533614 41 ATATCCTTCATTATGATATTGATGGACCAATGAACTGCACT ATATCCTTCATTATGATATCGATGGACCAATGAACTGCACT < 41bp 0.722120882140701 0.519714335055691 NA NA prediction 0.404813094170021 Functional Loss - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187533594 chr2:187533593 synonymous SNV . 0 20 hm7G_associated_SNPs_11804 0 0 1 0 1 ITGAV chr2:187533647 5'GT 187533647 Upstream 55bp 11173 chr12 56531154 56531154 1 + T C rs2271192 56531155 + 56531135 56531175 41 CTGATAGCCAGTTTGGGACTGAGGTGAGTCTATATCTGGAA CTGATAGCCAGTTTGGGACCGAGGTGAGTCTATATCTGGAA < 41bp 0.744471562430199 0.542067268360642 NA NA prediction 0.404808588139115 Functional Loss - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531155 chr12:56531154 synonymous SNV . 0 20 hm7G_associated_SNPs_11806 0 1 1 0 1 ESYT1 chr12:56531157 5'GT 56531157 Upstream 4bp 11174 chrX 106482196 106482196 1 + T G UCEC 106482197 + 106482177 106482217 41 ACCCTTCTGATATTCAAATTGATATCCAGGAAACAATCCTT ACCCTTCTGATATTCAAATGGATATCCAGGAAACAATCCTT < 41bp 0.899067599101684 0.696681617332228 NA NA prediction 0.404771963538912 Functional Loss - PIH1D3 ENSG00000080572 CDS Human protein_coding chrX:106482197 chrX:106482196 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_11807 0 0 0 0 2 PIH1D3 chrX:106482152 3'AG 106482152 Downstream 45bp 11175 chrX 106482196 106482196 1 + T G UCEC 106482197 + 106482177 106482217 41 ACCCTTCTGATATTCAAATTGATATCCAGGAAACAATCCTT ACCCTTCTGATATTCAAATGGATATCCAGGAAACAATCCTT < 41bp 0.899067599101684 0.696681617332228 NA NA prediction 0.404771963538912 Functional Loss - PIH1D3 ENSG00000080572 CDS Human protein_coding chrX:106482197 chrX:106482196 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_11807 0 0 0 0 2 PIH1D3 chrX:106482237 5'GT 106482237 Upstream 42bp 11176 chr8 26481771 26481771 1 + T C rs327222 26481772 + 26481752 26481792 41 CTCTGCATGTGGACATCAGTGAGTGGCATAAGGGCATCCAG CTCTGCATGTGGACATCAGCGAGTGGCATAAGGGCATCCAG < 41bp 0.748494276398274 0.546113269283352 NA NA prediction 0.404762014229843 Functional Loss - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26481772 chr8:26481771 synonymous SNV . 0 20 hm7G_associated_SNPs_11809 0 0 1 0 1 DPYSL2 chr8:26481823 5'GT 26481823 Upstream 53bp 11177 chr4 88996004 88996004 1 + A G LUSC 88996005 + 88995985 88996025 41 GATGGAGCATTCCATCGGCAGCATAGTGTCCAAGATTGACG GATGGAGCATTCCATCGGCGGCATAGTGTCCAAGATTGACG < 41bp 0.717936669023565 0.515557801538848 NA NA prediction 0.404757734969434 Functional Loss - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88996005 chr4:88996004 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_11810 0 0 0 0 1 PKD2 chr4:88995964 3'AG 88995964 Downstream 41bp 11178 chr12 50029010 50029010 1 + A G LUAD 50029011 + 50028991 50029031 41 ACCCTGCAGCATTTCCTGGAGCAGCATGAACGCATGACCTC ACCCTGCAGCATTTCCTGGGGCAGCATGAACGCATGACCTC < 41bp 0.760955216473352 0.558593951753104 NA NA prediction 0.404722529440496 Functional Loss - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50029011 chr12:50029010 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11813 0 0 1 0 1 PRPF40B chr12:50029046 5'GT 50029046 Upstream 37bp 11179 chr1 222806483 222806483 1 + T C STAD 222806484 + 222806464 222806504 41 ACACTCCTATGGATGCTATTGATGCAAACAAGCAACCAGAG ACACTCCTATGGATGCTATCGATGCAAACAAGCAACCAGAG < 41bp 0.702357086723904 0.496170908591761 NA NA prediction 0.404714173447808 Functional Loss - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222806484 chr1:222806483 synonymous SNV . 0 20 hm7G_associated_SNPs_11814 0 0 1 0 1 MIA3 chr1:222806446 3'AG 222806446 Downstream 38bp 11180 chr16 1244995 1244995 1 + T C STAD 1244996 + 1244976 1245016 41 TTCGAGCACGTGAGCATGCTGGTAATCATGCTCAACTGCGT TTCGAGCACGTGAGCATGCCGGTAATCATGCTCAACTGCGT < 41bp 0.731467612471607 0.529113493214941 NA NA prediction 0.404708238513332 Functional Loss - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1244996 chr16:1244995 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_11815 0 0 0 0 1 CACNA1H chr16:1245083 5'GT 1245083 Upstream 89bp 11181 chr20 1896060 1896060 1 + T C rs114499682 1896061 + 1896041 1896081 41 AAAGGGAGCCCCGATGACGTGGAGTTTAAGTCTGGAGCAGG AAAGGGAGCCCCGATGACGCGGAGTTTAAGTCTGGAGCAGG < 41bp 0.750234033474172 0.54788179955575 NA NA prediction 0.404704467836843 Functional Loss - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1896061 chr20:1896060 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_11816 0 0 0 0 1 SIRPA chr20:1896101 5'GT 1896101 Upstream 42bp 11182 chr15 40861920 40861920 1 + T C rs35951300 40861921 + 40861901 40861941 41 GCTTCGGAGATGAGCACTTTGCAGAAACCAGTTATTACTTC GCTTCGGAGATGAGCACTTCGCAGAAACCAGTTATTACTTC < 41bp 0.702344986729668 0.49243926504542 NA NA prediction 0.404689973459336 Functional Loss - RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40861921 chr15:40861920 synonymous SNV . 0 20 hm7G_associated_SNPs_11817 0 0 1 0 1 RPUSD2 chr15:40861959 5'GT 40861959 Upstream 40bp 11183 chr10 75849098 75849098 1 + T C SKCM 75849099 + 75849079 75849119 41 GCATTGCAAAGAAGATCGATGCTGCTCAGGTAGTCACAGTG GCATTGCAAAGAAGATCGACGCTGCTCAGGTAGTCACAGTG < 41bp 0.737692662935892 0.53534851383527 NA NA prediction 0.404688298201243 Functional Loss - VCL ENSG00000035403 CDS Human protein_coding chr10:75849099 chr10:75849098 synonymous SNV . 0 20 hm7G_associated_SNPs_11818 0 0 1 0 1 VCL chr10:75849107 5'GT 75849107 Upstream 10bp 11184 chr19 55106850 55106850 1 + T C COAD 55106851 + 55106831 55106871 41 TCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGA TCTCTACCCAGTGATCTCCCGGAGCTCCTGGTCCTAGGTGA < 41bp 0.742703616724685 0.540361350065144 NA NA prediction 0.404684533319083 Functional Loss - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106851 chr19:55106850 nonsynonymous SNV 0.212 3 20 hm7G_associated_SNPs_11819 0 0 0 0 1 LILRA1 chr19:55106867 5'GT 55106867 Upstream 18bp 11185 chr1 17552594 17552594 1 + A G SKCM 17552595 + 17552575 17552615 41 AAGCTCTTCGACAGCCACAAGCTTGTCTTGAACGTGCCCTT AAGCTCTTCGACAGCCACAGGCTTGTCTTGAACGTGCCCTT < 41bp 0.762883102816126 0.560543926570496 NA NA prediction 0.404678352491259 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17552595 chr1:17552594 nonsynonymous SNV 0.806 0 20 hm7G_associated_SNPs_11820 0 0 0 0 2 PADI1 chr1:17552528 3'AG 17552528 Downstream 67bp 11186 chr1 17552594 17552594 1 + A G SKCM 17552595 + 17552575 17552615 41 AAGCTCTTCGACAGCCACAAGCTTGTCTTGAACGTGCCCTT AAGCTCTTCGACAGCCACAGGCTTGTCTTGAACGTGCCCTT < 41bp 0.762883102816126 0.560543926570496 NA NA prediction 0.404678352491259 Functional Loss - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17552595 chr1:17552594 nonsynonymous SNV 0.806 0 20 hm7G_associated_SNPs_11820 0 0 0 0 2 PADI1 chr1:17552653 5'GT 17552653 Upstream 60bp 11187 chr8 37691330 37691330 1 + T G rs141849061 37691331 + 37691311 37691351 41 CAGATGATCCAGAAATTTTTGGGTTATGTCGACCAGATCAA CAGATGATCCAGAAATTTTGGGGTTATGTCGACCAGATCAA < 41bp 0.702339174936065 0.344104729611908 NA NA prediction 0.40467834987213 Functional Loss - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37691331 chr8:37691330 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11821 0 0 0 0 1 ADGRA2 chr8:37691355 5'GT 37691355 Upstream 26bp 11188 chr11 1475777 1475777 1 + T C HNSC 1475778 + 1475758 1475798 41 AAGGAGGAGCAGATCTTCGTGGTCATCAAAGACAAACCTCT AAGGAGGAGCAGATCTTCGCGGTCATCAAAGACAAACCTCT < 41bp 0.744591712878311 0.542258636568661 NA NA prediction 0.404666152619299 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1475778 chr11:1475777 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_11823 0 0 0 0 2 BRSK2 chr11:1475715 3'AG 1475715 Downstream 63bp 11189 chr11 1475777 1475777 1 + T C HNSC 1475778 + 1475758 1475798 41 AAGGAGGAGCAGATCTTCGTGGTCATCAAAGACAAACCTCT AAGGAGGAGCAGATCTTCGCGGTCATCAAAGACAAACCTCT < 41bp 0.744591712878311 0.542258636568661 NA NA prediction 0.404666152619299 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1475778 chr11:1475777 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_11823 0 0 0 0 2 BRSK2 chr11:1475838 5'GT 1475838 Upstream 62bp 11190 chr13 100523225 100523225 1 + T C UCEC 100523226 + 100523206 100523246 41 CACCCTAACCAAATTGCCGTGGTCCAGGAGCAGTTTTCTCC CACCCTAACCAAATTGCCGCGGTCCAGGAGCAGTTTTCTCC < 41bp 0.702332462453558 0.488274948424738 NA NA prediction 0.404664924907116 Functional Loss - CLYBL ENSG00000125246 CDS Human protein_coding chr13:100523226 chr13:100523225 nonsynonymous SNV 0.943 0 20 hm7G_associated_SNPs_11824 0 0 0 0 2 CLYBL chr13:100523192 3'AG 100523192 Downstream 34bp 11191 chr13 100523225 100523225 1 + T C UCEC 100523226 + 100523206 100523246 41 CACCCTAACCAAATTGCCGTGGTCCAGGAGCAGTTTTCTCC CACCCTAACCAAATTGCCGCGGTCCAGGAGCAGTTTTCTCC < 41bp 0.702332462453558 0.488274948424738 NA NA prediction 0.404664924907116 Functional Loss - CLYBL ENSG00000125246 CDS Human protein_coding chr13:100523226 chr13:100523225 nonsynonymous SNV 0.943 0 20 hm7G_associated_SNPs_11824 0 0 0 0 2 CLYBL chr13:100523316 5'GT 100523316 Upstream 92bp 11192 chr12 6942971 6942971 1 + A G COAD 6942972 + 6942952 6942992 41 AAGCCCTTGACCTACTGGAAGGGTGAGTTCCTGGGAGGGAG AAGCCCTTGACCTACTGGAGGGGTGAGTTCCTGGGAGGGAG < 41bp 0.759213386683643 0.55688576873855 NA NA prediction 0.404655235890186 Functional Loss - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6942972 chr12:6942971 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_11825 0 0 0 0 1 P3H3 chr12:6942906 3'AG 6942906 Downstream 66bp 11193 chrX 36337351 36337351 1 + T C rs145065748 36337352 + 36337332 36337372 41 CATCCCAGGAATCTTGTCATGGATCATTGCTGGGATAGCTT CATCCCAGGAATCTTGTCACGGATCATTGCTGGGATAGCTT < 41bp 0.7102933295468 0.50798657492208 NA NA prediction 0.40461350924944 Functional Loss - CFAP47 ENSG00000205081 CDS Human other chrX:36337352 chrX:36337351 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_11828 0 0 0 0 2 CFAP47 chrX:36337324 3'AG 36337324 Downstream 28bp 11194 chrX 36337351 36337351 1 + T C rs145065748 36337352 + 36337332 36337372 41 CATCCCAGGAATCTTGTCATGGATCATTGCTGGGATAGCTT CATCCCAGGAATCTTGTCACGGATCATTGCTGGGATAGCTT < 41bp 0.7102933295468 0.50798657492208 NA NA prediction 0.40461350924944 Functional Loss - CFAP47 ENSG00000205081 CDS Human other chrX:36337352 chrX:36337351 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_11828 0 0 0 0 2 CFAP47 chrX:36337422 5'GT 36337422 Upstream 72bp 11195 chr14 91633635 91633635 1 + A G GBM 91633636 + 91633616 91633656 41 GCTTTTGAAAGATTCTGCCAGGTCAACACTGGTCCTCTACC GCTTTTGAAAGATTCTGCCGGGTCAACACTGGTCCTCTACC < 41bp 0.74461002159647 0.542310394485217 NA NA prediction 0.404599254222505 Functional Loss - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91633636 chr14:91633635 nonsynonymous SNV 0.928 1 20 hm7G_associated_SNPs_11831 0 0 1 2 2 C14orf159 chr14:91633569 3'AG 91633569 Downstream 67bp 11196 chr14 91633635 91633635 1 + A G GBM 91633636 + 91633616 91633656 41 GCTTTTGAAAGATTCTGCCAGGTCAACACTGGTCCTCTACC GCTTTTGAAAGATTCTGCCGGGTCAACACTGGTCCTCTACC < 41bp 0.74461002159647 0.542310394485217 NA NA prediction 0.404599254222505 Functional Loss - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91633636 chr14:91633635 nonsynonymous SNV 0.928 1 20 hm7G_associated_SNPs_11831 0 0 1 2 2 C14orf159 chr14:91633722 5'GT 91633722 Upstream 88bp 11197 chr10 6255710 6255710 1 + A G HNSC 6255711 + 6255691 6255731 41 GGATTGGCGTCCCCACAAAAGGTGAGACTGGGTCTCGAGGC GGATTGGCGTCCCCACAAAGGGTGAGACTGGGTCTCGAGGC < 41bp 0.707456217213569 0.505173261666485 NA NA prediction 0.404565911094169 Functional Loss - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6255711 chr10:6255710 synonymous SNV . 0 20 hm7G_associated_SNPs_11832 0 0 1 0 1 PFKFB3 chr10:6255711 5'GT 6255711 Upstream 2bp 11198 chr1 110031648 110031648 1 + A G rs377046901 110031649 + 110031629 110031669 41 CCTCCTCAGTCCAGGTTGTAGCAGCGGTGGCTGCTCCCAGC CCTCCTCAGTCCAGGTTGTGGCAGCGGTGGCTGCTCCCAGC < 41bp 0.7702816742177 0.568007514797935 NA NA prediction 0.404548318839531 Functional Loss - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110031649 chr1:110031648 synonymous SNV . 0 20 hm7G_associated_SNPs_11834 0 0 0 0 1 ATXN7L2 chr1:110031722 5'GT 110031722 Upstream 75bp 11199 chr9 136522203 136522203 1 + A G KIRC 136522204 + 136522184 136522224 41 CCCACCAGGTTCAACAACGAGGATGTCTGCACCTGCCCTCA CCCACCAGGTTCAACAACGGGGATGTCTGCACCTGCCCTCA < 41bp 0.780134916597416 0.577863152882931 NA NA prediction 0.404543527428969 Functional Loss - DBH ENSG00000123454 CDS Human protein_coding chr9:136522204 chr9:136522203 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_11835 0 0 0 0 1 DBH chr9:136522192 3'AG 136522192 Downstream 12bp 11200 chr11 120989036 120989036 1 + A G UCEC 120989037 + 120989017 120989057 41 CAATTCCTTCGGCGAGGGGAGGTGTTTTGGGATGACTTGAA CAATTCCTTCGGCGAGGGGGGGTGTTTTGGGATGACTTGAA < 41bp 0.711966100353854 0.509694665540967 NA NA prediction 0.404542869625773 Functional Loss - TECTA ENSG00000109927 CDS Human protein_coding chr11:120989037 chr11:120989036 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_11836 0 0 0 0 1 TECTA chr11:120989015 3'AG 120989015 Downstream 22bp 11201 chr12 100796511 100796511 1 + T G LUSC 100796512 + 100796492 100796532 41 TTGAAGAGGTCTTTGGATTTGCAATAAGTAAGGTAAACACA TTGAAGAGGTCTTTGGATTGGCAATAAGTAAGGTAAACACA < 41bp 0.897011936193445 0.694741483688572 NA NA prediction 0.404540905009746 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100796512 chr12:100796511 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11837 0 0 0 0 1 SLC17A8 chr12:100796523 5'GT 100796523 Upstream 13bp 11202 chr10 20500613 20500613 1 + T C STAD 20500614 + 20500594 20500634 41 GAAGATGTTCCAGTGGATTTGATCGTCATCGGCAGGACTGG GAAGATGTTCCAGTGGATTCGATCGTCATCGGCAGGACTGG < 41bp 0.71874898674973 0.516485410597503 NA NA prediction 0.404527152304455 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20500614 chr10:20500613 synonymous SNV . 0 20 hm7G_associated_SNPs_11838 0 0 0 0 2 PLXDC2 chr10:20500598 3'AG 20500598 Downstream 16bp 11203 chr10 20500613 20500613 1 + T C STAD 20500614 + 20500594 20500634 41 GAAGATGTTCCAGTGGATTTGATCGTCATCGGCAGGACTGG GAAGATGTTCCAGTGGATTCGATCGTCATCGGCAGGACTGG < 41bp 0.71874898674973 0.516485410597503 NA NA prediction 0.404527152304455 Functional Loss - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20500614 chr10:20500613 synonymous SNV . 0 20 hm7G_associated_SNPs_11838 0 0 0 0 2 PLXDC2 chr10:20500658 5'GT 20500658 Upstream 46bp 11204 chr22 32198798 32198798 1 + T C KIRP 32198799 + 32198779 32198819 41 GACCGCCTACTCATGATCCTGACCAAGCAGCGGATGATAGA GACCGCCTACTCATGATCCCGACCAAGCAGCGGATGATAGA < 41bp 0.707255143257151 0.504993224152591 NA NA prediction 0.404523838209121 Functional Loss - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32198799 chr22:32198798 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11839 0 0 1 0 1 DEPDC5 chr22:32198824 5'GT 32198824 Upstream 27bp 11205 chr19 33572129 33572129 1 + A G rs140377964 33572130 + 33572110 33572150 41 GGGACAGTGACAGCGAAGAAGATCTGGTCAGCTATGGGACC GGGACAGTGACAGCGAAGAGGATCTGGTCAGCTATGGGACC < 41bp 0.718981346662378 0.516725138927072 NA NA prediction 0.404512415470611 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33572130 chr19:33572129 synonymous SNV . 0 20 hm7G_associated_SNPs_11841 0 0 1 0 1 GPATCH1 chr19:33572172 5'GT 33572172 Upstream 44bp 11206 chr10 95552653 95552653 1 + T C rs1111820 95552654 + 95552634 95552674 41 GTCTCTCCTCGAAGGATTTTGATTGCATCATTACAGGTAAT GTCTCTCCTCGAAGGATTTCGATTGCATCATTACAGGTAAT < 41bp 0.722630635951675 0.520383561918236 NA NA prediction 0.404494148066877 Functional Loss - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95552654 chr10:95552653 synonymous SNV . 0 20 hm7G_associated_SNPs_11842 1 0 0 0 1 LGI1 chr10:95552669 5'GT 95552669 Upstream 17bp 11207 chr3 129234346 129234346 1 + T C UCEC 129234347 + 129234327 129234367 41 GTAGGAGTTGGTGCCCTTGTGCTACCGCTGCTCCACCAACA GTAGGAGTTGGTGCCCTTGCGCTACCGCTGCTCCACCAACA < 41bp 0.702244358815484 0.498990352409343 NA NA prediction 0.404488717630967 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129234347 chr3:129234346 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11843 0 0 0 0 2 IFT122 chr3:129234331 3'AG 129234331 Downstream 16bp 11208 chr3 129234346 129234346 1 + T C UCEC 129234347 + 129234327 129234367 41 GTAGGAGTTGGTGCCCTTGTGCTACCGCTGCTCCACCAACA GTAGGAGTTGGTGCCCTTGCGCTACCGCTGCTCCACCAACA < 41bp 0.702244358815484 0.498990352409343 NA NA prediction 0.404488717630967 Functional Loss - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129234347 chr3:129234346 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11843 0 0 0 0 2 IFT122 chr3:129234442 5'GT 129234442 Upstream 97bp 11209 chr1 248039310 248039310 1 + A G LGG 248039311 + 248039291 248039331 41 GATGTCCCCAACAACCCTGAGCGATTTGACACATGGCCCTG GATGTCCCCAACAACCCTGGGCGATTTGACACATGGCCCTG < 41bp 0.752764336057705 0.550525784202368 NA NA prediction 0.404477103710674 Functional Loss - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039311 chr1:248039310 nonsynonymous SNV 0.010 2 20 hm7G_associated_SNPs_11844 0 0 0 0 1 TRIM58 chr1:248039339 5'GT 248039339 Upstream 30bp 11210 chr11 46689353 46689353 1 + T C rs61736849 46689354 + 46689334 46689374 41 AAACCGTATCAAACAGCAGTGAGGGACGGGCCTCCCCTCAC AAACCGTATCAAACAGCAGCGAGGGACGGGCCTCCCCTCAC < 41bp 0.702237993686697 0.490316829781421 NA NA prediction 0.404475987373394 Functional Loss - ATG13 ENSG00000175224 CDS Human protein_coding chr11:46689354 chr11:46689353 synonymous SNV . 0 20 hm7G_associated_SNPs_11845 0 0 1 0 2 ATG13 chr11:46689323 3'AG 46689323 Downstream 31bp 11211 chr11 46689353 46689353 1 + T C rs61736849 46689354 + 46689334 46689374 41 AAACCGTATCAAACAGCAGTGAGGGACGGGCCTCCCCTCAC AAACCGTATCAAACAGCAGCGAGGGACGGGCCTCCCCTCAC < 41bp 0.702237993686697 0.490316829781421 NA NA prediction 0.404475987373394 Functional Loss - ATG13 ENSG00000175224 CDS Human protein_coding chr11:46689354 chr11:46689353 synonymous SNV . 0 20 hm7G_associated_SNPs_11845 0 0 1 0 2 ATG13 chr11:46689437 5'GT 46689437 Upstream 85bp 11212 chr12 2909266 2909266 1 + A G LIHC 2909267 + 2909247 2909287 41 CAGAGCACCATAGTGAAAGAGCGGGGCACTGTGTACTTCAA CAGAGCACCATAGTGAAAGGGCGGGGCACTGTGTACTTCAA < 41bp 0.703976035385766 0.501740337859534 NA NA prediction 0.404471395052463 Functional Loss - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2909267 chr12:2909266 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11847 0 0 1 0 2 FKBP4 chr12:2909205 3'AG 2909205 Downstream 62bp 11213 chr12 2909266 2909266 1 + A G LIHC 2909267 + 2909247 2909287 41 CAGAGCACCATAGTGAAAGAGCGGGGCACTGTGTACTTCAA CAGAGCACCATAGTGAAAGGGCGGGGCACTGTGTACTTCAA < 41bp 0.703976035385766 0.501740337859534 NA NA prediction 0.404471395052463 Functional Loss - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2909267 chr12:2909266 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11847 0 0 1 0 2 FKBP4 chr12:2909288 5'GT 2909288 Upstream 23bp 11214 chr3 16260917 16260917 1 + A G UCEC 16260918 + 16260898 16260938 41 TCTCCTCCCCAGGCTGAGAAGCCAGACTGCATGGAACGCTT TCTCCTCCCCAGGCTGAGAGGCCAGACTGCATGGAACGCTT < 41bp 0.702235499610384 0.491914909447196 NA NA prediction 0.404470999220768 Functional Loss - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16260918 chr3:16260917 nonsynonymous SNV 0.208 0 20 hm7G_associated_SNPs_11848 0 0 0 0 1 GALNT15 chr3:16260910 3'AG 16260910 Downstream 8bp 11215 chr9 134382763 134382763 1 + A G GBM 134382764 + 134382744 134382784 41 TGCTTTTCCAGAATACAGTAGCAACGTGCCTGTGTGGTCCC TGCTTTTCCAGAATACAGTGGCAACGTGCCTGTGTGGTCCC < 41bp 0.702229094142918 0.482865545577155 NA NA prediction 0.404458188285836 Functional Loss - POMT1 ENSG00000130714 CDS Human protein_coding chr9:134382764 chr9:134382763 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_11851 0 0 1 0 1 POMT1 chr9:134382755 3'AG 134382755 Downstream 9bp 11216 chr1 112302032 112302032 1 + T C UCEC 112302033 + 112302013 112302053 41 TTTTTTTAGATTTTGATCTTGGCTCCTACAAGAGAAATTGC TTTTTTTAGATTTTGATCTCGGCTCCTACAAGAGAAATTGC < 41bp 0.708306419430781 0.506079476614234 NA NA prediction 0.404453885633093 Functional Loss - DDX20 ENSG00000064703 CDS Human protein_coding chr1:112302033 chr1:112302032 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11852 0 0 1 0 1 DDX20 chr1:112302022 3'AG 112302022 Downstream 11bp 11217 chr7 27856087 27856087 1 + T C KIRP 27856088 + 27856068 27856108 41 ATGTTCTCACATTGTCAAATGCACAACCAGTTCTGCAATAT ATGTTCTCACATTGTCAAACGCACAACCAGTTCTGCAATAT < 41bp 0.720678342408805 0.518458721532914 NA NA prediction 0.404439241751783 Functional Loss - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27856088 chr7:27856087 synonymous SNV . 0 20 hm7G_associated_SNPs_11853 0 0 0 0 1 TAX1BP1 chr7:27856139 5'GT 27856139 Upstream 53bp 11218 chr7 44152925 44152925 1 + T C SARC 44152926 + 44152906 44152946 41 ACGCCACCATCTCTGTGAGTGGCATTAATCACGGCGTGAAG ACGCCACCATCTCTGTGAGCGGCATTAATCACGGCGTGAAG < 41bp 0.702214172443696 0.483906224010965 NA NA prediction 0.404428344887392 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44152926 chr7:44152925 synonymous SNV . 0 20 hm7G_associated_SNPs_11854 0 0 0 0 2 AEBP1 chr7:44152851 3'AG 44152851 Downstream 75bp 11219 chr7 44152925 44152925 1 + T C SARC 44152926 + 44152906 44152946 41 ACGCCACCATCTCTGTGAGTGGCATTAATCACGGCGTGAAG ACGCCACCATCTCTGTGAGCGGCATTAATCACGGCGTGAAG < 41bp 0.702214172443696 0.483906224010965 NA NA prediction 0.404428344887392 Functional Loss - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44152926 chr7:44152925 synonymous SNV . 0 20 hm7G_associated_SNPs_11854 0 0 0 0 2 AEBP1 chr7:44152950 5'GT 44152950 Upstream 26bp 11220 chr8 38913249 38913249 1 + T C UCEC 38913250 + 38913230 38913270 41 CTATTGCTACAACGGCATGTGCCAGTATTATGATGCTCAAT CTATTGCTACAACGGCATGCGCCAGTATTATGATGCTCAAT < 41bp 0.720951909012001 0.518742610743961 NA NA prediction 0.404418596536078 Functional Loss - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38913250 chr8:38913249 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_11855 0 0 0 3 1 ADAM9 chr8:38913291 5'GT 38913291 Upstream 43bp 11221 chr6 3264487 3264487 1 + T C rs4959786 3264488 + 3264468 3264508 41 CTGTGAGTGTGGCGTAGAGTGGGGATTAAGCAAAGGTCATG CTGTGAGTGTGGCGTAGAGCGGGGATTAAGCAAAGGTCATG < 41bp 0.702205139414757 0.497823287961495 NA NA prediction 0.404410278829514 Functional Loss - PSMG4 ENSG00000180822 CDS Human protein_coding chr6:3264488 chr6:3264487 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_11858 0 0 1 0 2 PSMG4 chr6:3264443 3'AG 3264443 Downstream 45bp 11222 chr6 3264487 3264487 1 + T C rs4959786 3264488 + 3264468 3264508 41 CTGTGAGTGTGGCGTAGAGTGGGGATTAAGCAAAGGTCATG CTGTGAGTGTGGCGTAGAGCGGGGATTAAGCAAAGGTCATG < 41bp 0.702205139414757 0.497823287961495 NA NA prediction 0.404410278829514 Functional Loss - PSMG4 ENSG00000180822 CDS Human protein_coding chr6:3264488 chr6:3264487 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_11858 0 0 1 0 2 PSMG4 chr6:3264559 5'GT 3264559 Upstream 73bp 11223 chr7 56128609 56128609 1 + T C STAD 56128610 + 56128590 56128630 41 TTGGAGTCCAAGCATTTGCTGATGCATTGCTCATTATTCCC TTGGAGTCCAAGCATTTGCCGATGCATTGCTCATTATTCCC < 41bp 0.749789842934428 0.547588919668553 NA NA prediction 0.40440184653175 Functional Loss - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56128610 chr7:56128609 synonymous SNV . 0 20 hm7G_associated_SNPs_11861 0 0 1 0 1 CCT6A chr7:56128633 5'GT 56128633 Upstream 25bp 11224 chr4 166160009 166160009 1 + T C BLCA 166160010 + 166159990 166160030 41 TGAGGATGCTAATTGATTATGTTTACACTGCAGAAATTCAG TGAGGATGCTAATTGATTACGTTTACACTGCAGAAATTCAG < 41bp 0.723126754316624 0.520928494087045 NA NA prediction 0.404396520459158 Functional Loss - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166160010 chr4:166160009 synonymous SNV . 0 20 hm7G_associated_SNPs_11862 0 0 0 0 2 KLHL2 chr4:166159930 3'AG 166159930 Downstream 80bp 11225 chr4 166160009 166160009 1 + T C BLCA 166160010 + 166159990 166160030 41 TGAGGATGCTAATTGATTATGTTTACACTGCAGAAATTCAG TGAGGATGCTAATTGATTACGTTTACACTGCAGAAATTCAG < 41bp 0.723126754316624 0.520928494087045 NA NA prediction 0.404396520459158 Functional Loss - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166160010 chr4:166160009 synonymous SNV . 0 20 hm7G_associated_SNPs_11862 0 0 0 0 2 KLHL2 chr4:166160051 5'GT 166160051 Upstream 43bp 11226 chr18 43314299 43314299 1 + T C rs16978473 43314300 + 43314280 43314320 41 TGGTGGGAGTACTCATGGCTGTCTTTTCGGACAAGGGAGAC TGGTGGGAGTACTCATGGCCGTCTTTTCGGACAAGGGAGAC < 41bp 0.729993834773213 0.52780615400352 NA NA prediction 0.404375361539386 Functional Loss - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43314300 chr18:43314299 synonymous SNV . 0 20 hm7G_associated_SNPs_11863 0 0 0 0 2 SLC14A1 chr18:43314239 3'AG 43314239 Downstream 61bp 11227 chr18 43314299 43314299 1 + T C rs16978473 43314300 + 43314280 43314320 41 TGGTGGGAGTACTCATGGCTGTCTTTTCGGACAAGGGAGAC TGGTGGGAGTACTCATGGCCGTCTTTTCGGACAAGGGAGAC < 41bp 0.729993834773213 0.52780615400352 NA NA prediction 0.404375361539386 Functional Loss - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43314300 chr18:43314299 synonymous SNV . 0 20 hm7G_associated_SNPs_11863 0 0 0 0 2 SLC14A1 chr18:43314367 5'GT 43314367 Upstream 69bp 11228 chr1 196706717 196706717 1 + T C UCEC 196706718 + 196706698 196706738 41 TGAGTTATACTTGTGAGGGTGGTTTCAGGATATCTGAAGAA TGAGTTATACTTGTGAGGGCGGTTTCAGGATATCTGAAGAA < 41bp 0.748314319423406 0.546127936875956 NA NA prediction 0.4043727650949 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196706718 chr1:196706717 synonymous SNV . 0 20 hm7G_associated_SNPs_11864 0 0 1 0 1 CFH chr1:196706790 5'GT 196706790 Upstream 74bp 11229 chr7 34094785 34094785 1 + T C UCEC 34094786 + 34094766 34094806 41 GGCCCCCAGGACTCTACTGTGGTTTGCAAGAGGAAGTGCTC GGCCCCCAGGACTCTACTGCGGTTTGCAAGAGGAAGTGCTC < 41bp 0.736849640397295 0.534671829928311 NA NA prediction 0.404355620937969 Functional Loss - BMPER ENSG00000164619 CDS Human protein_coding chr7:34094786 chr7:34094785 nonsynonymous SNV 0.892 2 20 hm7G_associated_SNPs_11865 0 0 0 0 1 BMPER chr7:34094775 3'AG 34094775 Downstream 11bp 11230 chr19 39949665 39949665 1 + T C STAD 39949666 + 39949646 39949686 41 GACCAGCGAGAAGAAGAACTGGGCGAGTATTACATGAAGAA GACCAGCGAGAAGAAGAACCGGGCGAGTATTACATGAAGAA < 41bp 0.71896697335404 0.516792378496363 NA NA prediction 0.404349189715354 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39949666 chr19:39949665 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11866 0 0 1 0 2 SUPT5H chr19:39949645 3'AG 39949645 Downstream 21bp 11231 chr19 39949665 39949665 1 + T C STAD 39949666 + 39949646 39949686 41 GACCAGCGAGAAGAAGAACTGGGCGAGTATTACATGAAGAA GACCAGCGAGAAGAAGAACCGGGCGAGTATTACATGAAGAA < 41bp 0.71896697335404 0.516792378496363 NA NA prediction 0.404349189715354 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39949666 chr19:39949665 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11866 0 0 1 0 2 SUPT5H chr19:39949713 5'GT 39949713 Upstream 49bp 11232 chr21 47542842 47542842 1 + A G SKCM 47542843 + 47542823 47542863 41 CTGGGAGGAAAGGAGAGAAAGGAGAGCCTGTGAGTGTCACC CTGGGAGGAAAGGAGAGAAGGGAGAGCCTGTGAGTGTCACC < 41bp 0.777437389422867 0.575266765224349 NA NA prediction 0.404341248397035 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47542843 chr21:47542842 synonymous SNV . 0 20 hm7G_associated_SNPs_11868 0 0 0 0 2 COL6A2 chr21:47542789 3'AG 47542789 Downstream 54bp 11233 chr21 47542842 47542842 1 + A G SKCM 47542843 + 47542823 47542863 41 CTGGGAGGAAAGGAGAGAAAGGAGAGCCTGTGAGTGTCACC CTGGGAGGAAAGGAGAGAAGGGAGAGCCTGTGAGTGTCACC < 41bp 0.777437389422867 0.575266765224349 NA NA prediction 0.404341248397035 Functional Loss - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47542843 chr21:47542842 synonymous SNV . 0 20 hm7G_associated_SNPs_11868 0 0 0 0 2 COL6A2 chr21:47542851 5'GT 47542851 Upstream 10bp 11234 chr14 100363565 100363565 1 + T C HNSC 100363566 + 100363546 100363586 41 TACTTCATCGCATCCGTGGTGGTGTTATACAACGTGGAGGA TACTTCATCGCATCCGTGGCGGTGTTATACAACGTGGAGGA < 41bp 0.755833651428683 0.553666297094174 NA NA prediction 0.404334708669017 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100363566 chr14:100363565 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_11869 0 0 0 0 2 EML1 chr14:100363482 3'AG 100363482 Downstream 84bp 11235 chr14 100363565 100363565 1 + T C HNSC 100363566 + 100363546 100363586 41 TACTTCATCGCATCCGTGGTGGTGTTATACAACGTGGAGGA TACTTCATCGCATCCGTGGCGGTGTTATACAACGTGGAGGA < 41bp 0.755833651428683 0.553666297094174 NA NA prediction 0.404334708669017 Functional Loss - EML1 ENSG00000066629 CDS Human protein_coding chr14:100363566 chr14:100363565 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_11869 0 0 0 0 2 EML1 chr14:100363631 5'GT 100363631 Upstream 67bp 11236 chr7 44801094 44801094 1 + T C HNSC 44801095 + 44801075 44801115 41 TGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCCCTTC TGACCTTCCCTGTGCGCGACGGGGTGGTCCTGGAGCCCTTC < 41bp 0.740446581123688 0.538280377889192 NA NA prediction 0.404332406468991 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801095 chr7:44801094 synonymous SNV . 0 20 hm7G_associated_SNPs_11870 0 0 1 0 2 ZMIZ2 chr7:44801048 3'AG 44801048 Downstream 47bp 11237 chr7 44801094 44801094 1 + T C HNSC 44801095 + 44801075 44801115 41 TGACCTTCCCTGTGCGCGATGGGGTGGTCCTGGAGCCCTTC TGACCTTCCCTGTGCGCGACGGGGTGGTCCTGGAGCCCTTC < 41bp 0.740446581123688 0.538280377889192 NA NA prediction 0.404332406468991 Functional Loss - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44801095 chr7:44801094 synonymous SNV . 0 20 hm7G_associated_SNPs_11870 0 0 1 0 2 ZMIZ2 chr7:44801192 5'GT 44801192 Upstream 99bp 11238 chr4 47578852 47578852 1 + T C rs150868549 47578853 + 47578833 47578873 41 TTTCAGGAACATCCATGACTGATTACTGGGTTTTGATCTTC TTTCAGGAACATCCATGACCGATTACTGGGTTTTGATCTTC < 41bp 0.702164017370663 0.487445379928726 NA NA prediction 0.404328034741325 Functional Loss - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47578853 chr4:47578852 synonymous SNV . 0 20 hm7G_associated_SNPs_11871 0 0 0 0 1 ATP10D chr4:47578790 3'AG 47578790 Downstream 63bp 11239 chr4 48027131 48027131 1 + T G rs190045000 48027132 + 48027112 48027152 41 ACTCCTCCCAGGCTTGGTGTGAGATCACAAATGTGTCACAG ACTCCTCCCAGGCTTGGTGGGAGATCACAAATGTGTCACAG < 41bp 0.911398549100268 0.709237226344737 NA NA prediction 0.404322645511061 Functional Loss - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48027132 chr4:48027131 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_11872 0 0 1 0 1 NIPAL1 chr4:48027085 3'AG 48027085 Downstream 47bp 11240 chr11 45927254 45927254 1 + A G UCEC 45927255 + 45927235 45927275 41 AGTACACCTGCCCCACAGAAGATATCTACCTGGAGTAGCTG AGTACACCTGCCCCACAGAGGATATCTACCTGGAGTAGCTG < 41bp 0.705439173784638 0.503280311063406 NA NA prediction 0.404317725442463 Functional Loss - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45927255 chr11:45927254 synonymous SNV . 0 20 hm7G_associated_SNPs_11873 0 0 0 0 1 MAPK8IP1 chr11:45927200 3'AG 45927200 Downstream 55bp 11241 chr7 43647885 43647885 1 + T G UCEC 43647886 + 43647866 43647906 41 GTGAAATCTTTGACCAGTGTGTTGCAGACAGAGAAGAAGCC GTGAAATCTTTGACCAGTGGGTTGCAGACAGAGAAGAAGCC < 41bp 0.901534270279416 0.699375592376738 NA NA prediction 0.404317355805358 Functional Loss - STK17A ENSG00000164543 CDS Human protein_coding chr7:43647886 chr7:43647885 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_11874 0 0 1 0 1 STK17A chr7:43647855 3'AG 43647855 Downstream 31bp 11242 chr1 196645149 196645149 1 + T C LUAD 196645150 + 196645130 196645170 41 TAGGTGAGATTAATTACCGTGAATGTGACACAGATGGATGG TAGGTGAGATTAATTACCGCGAATGTGACACAGATGGATGG < 41bp 0.748966113273834 0.546807611907909 NA NA prediction 0.40431700273185 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196645150 chr1:196645149 synonymous SNV . 0 20 hm7G_associated_SNPs_11875 0 0 1 0 2 CFH chr1:196645119 3'AG 196645119 Downstream 31bp 11243 chr1 196645149 196645149 1 + T C LUAD 196645150 + 196645130 196645170 41 TAGGTGAGATTAATTACCGTGAATGTGACACAGATGGATGG TAGGTGAGATTAATTACCGCGAATGTGACACAGATGGATGG < 41bp 0.748966113273834 0.546807611907909 NA NA prediction 0.40431700273185 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196645150 chr1:196645149 synonymous SNV . 0 20 hm7G_associated_SNPs_11875 0 0 1 0 2 CFH chr1:196645195 5'GT 196645195 Upstream 47bp 11244 chr6 33656119 33656119 1 + A G LUAD 33656120 + 33656100 33656140 41 CGGCTCTTCACCACTACTGAGCAGGACGAGCAGGGCAGCAA CGGCTCTTCACCACTACTGGGCAGGACGAGCAGGGCAGCAA < 41bp 0.703951666721131 0.501793872516171 NA NA prediction 0.404315588409919 Functional Loss - ITPR3 ENSG00000096433 CDS Human protein_coding chr6:33656120 chr6:33656119 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_11876 0 0 1 0 1 ITPR3 chr6:33656208 5'GT 33656208 Upstream 90bp 11245 chr8 42179924 42179924 1 + T C UCEC 42179925 + 42179905 42179945 41 CCCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATGA CCCAAGGTGGAAGAGGTGGCGAGCTTAATGAATGAGGATGA < 41bp 0.737288803738263 0.535132763640833 NA NA prediction 0.404312080194861 Functional Loss - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179925 chr8:42179924 nonsynonymous SNV 0.568 1 20 hm7G_associated_SNPs_11877 0 0 1 2 1 IKBKB chr8:42179865 3'AG 42179865 Downstream 60bp 11246 chr3 50223760 50223760 1 + T C UCEC 50223761 + 50223741 50223781 41 CGGAAACCCCATCAGGCAGTGCCGTGGGTTCAACTCCAATG CGGAAACCCCATCAGGCAGCGCCGTGGGTTCAACTCCAATG < 41bp 0.736327143398998 0.534171360303324 NA NA prediction 0.404311566191347 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50223761 chr3:50223760 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11878 0 0 0 0 2 SEMA3F chr3:50223714 3'AG 50223714 Downstream 47bp 11247 chr3 50223760 50223760 1 + T C UCEC 50223761 + 50223741 50223781 41 CGGAAACCCCATCAGGCAGTGCCGTGGGTTCAACTCCAATG CGGAAACCCCATCAGGCAGCGCCGTGGGTTCAACTCCAATG < 41bp 0.736327143398998 0.534171360303324 NA NA prediction 0.404311566191347 Functional Loss - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50223761 chr3:50223760 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11878 0 0 0 0 2 SEMA3F chr3:50223781 5'GT 50223781 Upstream 22bp 11248 chr7 150707336 150707336 1 + A G UCEC 150707337 + 150707317 150707357 41 TGCTCAGCACCTTGGCAGAAGAGCCCAGGGAACAGCAGGAG TGCTCAGCACCTTGGCAGAGGAGCCCAGGGAACAGCAGGAG < 41bp 0.702154837999555 0.485820136464389 NA NA prediction 0.40430967599911 Functional Loss - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150707337 chr7:150707336 synonymous SNV . 0 20 hm7G_associated_SNPs_11879 0 0 0 0 1 NOS3 chr7:150707375 5'GT 150707375 Upstream 40bp 11249 chr3 108072329 108072329 1 + T C rs58233893 108072330 + 108072310 108072350 41 TGAATGAACAAATCGTCATTGGAAGACTTGATGAAGATATA TGAATGAACAAATCGTCATCGGAAGACTTGATGAAGATATA < 41bp 0.722279291946216 0.520128066645896 NA NA prediction 0.404302450600642 Functional Loss - HHLA2 ENSG00000114455 CDS Human protein_coding chr3:108072330 chr3:108072329 synonymous SNV . 0 20 hm7G_associated_SNPs_11881 0 0 0 0 1 HHLA2 chr3:108072274 3'AG 108072274 Downstream 56bp 11250 chr1 211534447 211534447 1 + T G COAD 211534448 + 211534428 211534468 41 AGGTAGATGAACACCTGGCTGTATGTCCTGAAGCTGAGCAA AGGTAGATGAACACCTGGCGGTATGTCCTGAAGCTGAGCAA < 41bp 0.702149432866321 0.368136438351497 NA NA prediction 0.404298865732643 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211534448 chr1:211534447 synonymous SNV . 0 20 hm7G_associated_SNPs_11882 0 0 1 0 2 TRAF5 chr1:211534430 3'AG 211534430 Downstream 18bp 11251 chr1 211534447 211534447 1 + T G COAD 211534448 + 211534428 211534468 41 AGGTAGATGAACACCTGGCTGTATGTCCTGAAGCTGAGCAA AGGTAGATGAACACCTGGCGGTATGTCCTGAAGCTGAGCAA < 41bp 0.702149432866321 0.368136438351497 NA NA prediction 0.404298865732643 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211534448 chr1:211534447 synonymous SNV . 0 20 hm7G_associated_SNPs_11882 0 0 1 0 2 TRAF5 chr1:211534504 5'GT 211534504 Upstream 58bp 11252 chr17 74901303 74901303 1 + A G BLCA 74901304 + 74901284 74901324 41 GACCTGATGGGCAGCGGGAAGGAGTCCCTGATCTTCATGAA GACCTGATGGGCAGCGGGAGGGAGTCCCTGATCTTCATGAA < 41bp 0.768848498546308 0.566702615787812 NA NA prediction 0.404291765516992 Functional Loss - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74901304 chr17:74901303 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11884 0 0 1 0 1 MGAT5B chr17:74901251 3'AG 74901251 Downstream 53bp 11253 chr3 137991924 137991924 1 + T C UCEC 137991925 + 137991905 137991945 41 AATGTGCTGATGAAGACATTGGGACTTCTTAGAAATCTCCT AATGTGCTGATGAAGACATCGGGACTTCTTAGAAATCTCCT < 41bp 0.702142054176189 0.494309950355662 NA NA prediction 0.404284108352377 Functional Loss - ARMC8 ENSG00000114098 CDS Human protein_coding chr3:137991925 chr3:137991924 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11885 0 0 1 0 1 ARMC8 chr3:137991958 5'GT 137991958 Upstream 35bp 11254 chr19 11218068 11218068 1 + T G STAD 11218069 + 11218049 11218089 41 CTCTCTCTGGCTCTCACAGTGACACTCTGCGAGGGACCCAA CTCTCTCTGGCTCTCACAGGGACACTCTGCGAGGGACCCAA < 41bp 0.702138964305426 0.363263754401945 NA NA prediction 0.404277928610852 Functional Loss - LDLR ENSG00000130164 CDS Human protein_coding chr19:11218069 chr19:11218068 nonsynonymous SNV 0.175 2 20 hm7G_associated_SNPs_11886 0 0 1 0 1 LDLR chr19:11218068 3'AG 11218068 Downstream 1bp 11255 chr16 629095 629095 1 + T C KIRC 629096 + 629076 629116 41 TGCCTGAAGATCCATGGCCTGTCCTCACTGTGGCGTCTGTT TGCCTGAAGATCCATGGCCCGTCCTCACTGTGGCGTCTGTT < 41bp 0.702135091899332 0.49552749044685 NA NA prediction 0.404270183798665 Functional Loss - PIGQ ENSG00000007541 CDS Human protein_coding chr16:629096 chr16:629095 nonsynonymous SNV 0.036 4 20 hm7G_associated_SNPs_11887 0 0 1 0 2 PIGQ chr16:629069 3'AG 629069 Downstream 27bp 11256 chr16 629095 629095 1 + T C KIRC 629096 + 629076 629116 41 TGCCTGAAGATCCATGGCCTGTCCTCACTGTGGCGTCTGTT TGCCTGAAGATCCATGGCCCGTCCTCACTGTGGCGTCTGTT < 41bp 0.702135091899332 0.49552749044685 NA NA prediction 0.404270183798665 Functional Loss - PIGQ ENSG00000007541 CDS Human protein_coding chr16:629096 chr16:629095 nonsynonymous SNV 0.036 4 20 hm7G_associated_SNPs_11887 0 0 1 0 2 PIGQ chr16:629180 5'GT 629180 Upstream 86bp 11257 chr12 7288836 7288836 1 + T C rs537697520 7288837 + 7288817 7288857 41 TCGAATATGCACCAGGTGCTGGGAGCTTGGCTTTGTTCCCT TCGAATATGCACCAGGTGCCGGGAGCTTGGCTTTGTTCCCT < 41bp 0.760695915857632 0.558563318283113 NA NA prediction 0.404265195149037 Functional Loss - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7288837 chr12:7288836 synonymous SNV . 0 20 hm7G_associated_SNPs_11888 0 0 1 0 1 CLSTN3 chr12:7288802 3'AG 7288802 Downstream 35bp 11258 chr17 42266741 42266741 1 + T C UCEC 42266742 + 42266722 42266762 41 AGGCTGGAGCTGGGGGTGGTGTTGAGCCCAGCCTTGAGCAT AGGCTGGAGCTGGGGGTGGCGTTGAGCCCAGCCTTGAGCAT < 41bp 0.741455627787085 0.539330115071442 NA NA prediction 0.404251025431287 Functional Loss - TMUB2 ENSG00000168591 CDS Human protein_coding chr17:42266742 chr17:42266741 synonymous SNV . 0 20 hm7G_associated_SNPs_11890 0 0 1 0 1 TMUB2 chr17:42266667 3'AG 42266667 Downstream 75bp 11259 chr1 40422846 40422846 1 + T C COAD 40422847 + 40422827 40422867 41 CCCCTACCAGGTGACGGGCTGTGCCCTGGGTTTCTTCCTTC CCCCTACCAGGTGACGGGCCGTGCCCTGGGTTTCTTCCTTC < 41bp 0.719575656998851 0.517452719863322 NA NA prediction 0.404245874271058 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40422847 chr1:40422846 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_11891 0 0 0 0 2 MFSD2A chr1:40422759 3'AG 40422759 Downstream 88bp 11260 chr1 40422846 40422846 1 + T C COAD 40422847 + 40422827 40422867 41 CCCCTACCAGGTGACGGGCTGTGCCCTGGGTTTCTTCCTTC CCCCTACCAGGTGACGGGCCGTGCCCTGGGTTTCTTCCTTC < 41bp 0.719575656998851 0.517452719863322 NA NA prediction 0.404245874271058 Functional Loss - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40422847 chr1:40422846 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_11891 0 0 0 0 2 MFSD2A chr1:40422893 5'GT 40422893 Upstream 48bp 11261 chr19 49962964 49962964 1 + T C UCEC 49962965 + 49962945 49962985 41 GAAGCACCAGCGGCTGCTGTGGACCCTGGAATCCCTGGTGA GAAGCACCAGCGGCTGCTGCGGACCCTGGAATCCCTGGTGA < 41bp 0.746519083883747 0.544404979594207 NA NA prediction 0.404228208579079 Functional Loss - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49962965 chr19:49962964 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_11892 0 0 1 0 1 ALDH16A1 chr19:49962927 3'AG 49962927 Downstream 38bp 11262 chr7 31008502 31008502 1 + T C COAD 31008503 + 31008483 31008523 41 TCACCCAGCTGAGAGAGGATGAGAGTGCCTGTCTACAAGCA TCACCCAGCTGAGAGAGGACGAGAGTGCCTGTCTACAAGCA < 41bp 0.704614346875243 0.502506127952967 NA NA prediction 0.404216437844553 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31008503 chr7:31008502 synonymous SNV . 0 20 hm7G_associated_SNPs_11893 0 0 0 0 2 GHRHR chr7:31008449 3'AG 31008449 Downstream 54bp 11263 chr7 31008502 31008502 1 + T C COAD 31008503 + 31008483 31008523 41 TCACCCAGCTGAGAGAGGATGAGAGTGCCTGTCTACAAGCA TCACCCAGCTGAGAGAGGACGAGAGTGCCTGTCTACAAGCA < 41bp 0.704614346875243 0.502506127952967 NA NA prediction 0.404216437844553 Functional Loss - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31008503 chr7:31008502 synonymous SNV . 0 20 hm7G_associated_SNPs_11893 0 0 0 0 2 GHRHR chr7:31008551 5'GT 31008551 Upstream 50bp 11264 chr5 149569898 149569898 1 + A G rs187423639 149569899 + 149569879 149569919 41 CCGCTCTCCAAGATGAAGAAGCTCCAGGGAGCTCACCTCCG CCGCTCTCCAAGATGAAGAGGCTCCAGGGAGCTCACCTCCG < 41bp 0.752850198004652 0.550748635500263 NA NA prediction 0.404203125008777 Functional Loss - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149569899 chr5:149569898 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_11895 0 0 0 0 1 SLC6A7 chr5:149569923 5'GT 149569923 Upstream 26bp 11265 chr20 371972 371972 1 + T C rs6051637 371973 + 371953 371993 41 TGGCCGTGCTGGAGCCCTATGCGCGGCTGCCCCCGCACAAG TGGCCGTGCTGGAGCCCTACGCGCGGCTGCCCCCGCACAAG < 41bp 0.725455228277938 0.523366605767816 NA NA prediction 0.404177245020244 Functional Loss - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:371973 chr20:371972 synonymous SNV . 0 20 hm7G_associated_SNPs_11896 0 0 1 0 1 TRIB3 chr20:371931 3'AG 371931 Downstream 42bp 11266 chr1 1560729 1560729 1 + A G LGG 1560730 + 1560710 1560750 41 CCCTTCCAGCACGGGGACAAGGTCAAGTGTCTGCTGGACAC CCCTTCCAGCACGGGGACAGGGTCAAGTGTCTGCTGGACAC < 41bp 0.702082049411018 0.487849079053427 NA NA prediction 0.404164098822036 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1560730 chr1:1560729 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_11898 0 0 1 0 2 MIB2 chr1:1560666 3'AG 1560666 Downstream 64bp 11267 chr1 1560729 1560729 1 + A G LGG 1560730 + 1560710 1560750 41 CCCTTCCAGCACGGGGACAAGGTCAAGTGTCTGCTGGACAC CCCTTCCAGCACGGGGACAGGGTCAAGTGTCTGCTGGACAC < 41bp 0.702082049411018 0.487849079053427 NA NA prediction 0.404164098822036 Functional Loss - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1560730 chr1:1560729 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_11898 0 0 1 0 2 MIB2 chr1:1560808 5'GT 1560808 Upstream 80bp 11268 chr2 33002975 33002975 1 + T C STAD 33002976 + 33002956 33002996 41 TGTGGTTTTCTCTCGGTTGTGCCTATTTGGCCTTGGAAGAC TGTGGTTTTCTCTCGGTTGCGCCTATTTGGCCTTGGAAGAC < 41bp 0.752082968930092 0.550001665084695 NA NA prediction 0.404162607690794 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33002976 chr2:33002975 synonymous SNV . 0 20 hm7G_associated_SNPs_11899 0 0 0 0 2 TTC27 chr2:33002949 3'AG 33002949 Downstream 27bp 11269 chr2 33002975 33002975 1 + T C STAD 33002976 + 33002956 33002996 41 TGTGGTTTTCTCTCGGTTGTGCCTATTTGGCCTTGGAAGAC TGTGGTTTTCTCTCGGTTGCGCCTATTTGGCCTTGGAAGAC < 41bp 0.752082968930092 0.550001665084695 NA NA prediction 0.404162607690794 Functional Loss - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33002976 chr2:33002975 synonymous SNV . 0 20 hm7G_associated_SNPs_11899 0 0 0 0 2 TTC27 chr2:33003047 5'GT 33003047 Upstream 73bp 11270 chr19 3282414 3282414 1 + T C OV 3282415 + 3282395 3282435 41 TCGTGGCTCCCATCACCAATGGCTTTGCAGGTGTCGTGCCC TCGTGGCTCCCATCACCAACGGCTTTGCAGGTGTCGTGCCC < 41bp 0.761080247454509 0.558999423115812 NA NA prediction 0.404161648677394 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282415 chr19:3282414 synonymous SNV . 0 20 hm7G_associated_SNPs_11900 0 0 0 0 2 CELF5 chr19:3282350 3'AG 3282350 Downstream 65bp 11271 chr19 3282414 3282414 1 + T C OV 3282415 + 3282395 3282435 41 TCGTGGCTCCCATCACCAATGGCTTTGCAGGTGTCGTGCCC TCGTGGCTCCCATCACCAACGGCTTTGCAGGTGTCGTGCCC < 41bp 0.761080247454509 0.558999423115812 NA NA prediction 0.404161648677394 Functional Loss - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282415 chr19:3282414 synonymous SNV . 0 20 hm7G_associated_SNPs_11900 0 0 0 0 2 CELF5 chr19:3282496 5'GT 3282496 Upstream 83bp 11272 chr1 204083481 204083481 1 + A G LUSC 204083482 + 204083462 204083502 41 CAGAGGGTAATGGGTCCCCAGAACCCAAGAGACCAGGAGTG CAGAGGGTAATGGGTCCCCGGAACCCAAGAGACCAGGAGTG < 41bp 0.760548935207985 0.558474304824656 NA NA prediction 0.404149260766658 Functional Loss - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204083482 chr1:204083481 synonymous SNV . 0 20 hm7G_associated_SNPs_11902 0 0 0 0 2 SOX13 chr1:204083449 3'AG 204083449 Downstream 33bp 11273 chr1 204083481 204083481 1 + A G LUSC 204083482 + 204083462 204083502 41 CAGAGGGTAATGGGTCCCCAGAACCCAAGAGACCAGGAGTG CAGAGGGTAATGGGTCCCCGGAACCCAAGAGACCAGGAGTG < 41bp 0.760548935207985 0.558474304824656 NA NA prediction 0.404149260766658 Functional Loss - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204083482 chr1:204083481 synonymous SNV . 0 20 hm7G_associated_SNPs_11902 0 0 0 0 2 SOX13 chr1:204083560 5'GT 204083560 Upstream 80bp 11274 chr9 20823039 20823039 1 + T C COAD 20823040 + 20823020 20823060 41 CTATTTCTCAAGTGTTGAATGAATGCACCAAGCCTGATCAA CTATTTCTCAAGTGTTGAACGAATGCACCAAGCCTGATCAA < 41bp 0.738546500867804 0.536506063470601 NA NA prediction 0.404080874794406 Functional Loss - FOCAD ENSG00000188352 CDS Human protein_coding chr9:20823040 chr9:20823039 synonymous SNV . 0 20 hm7G_associated_SNPs_11903 0 0 1 0 2 FOCAD chr9:20822988 3'AG 20822988 Downstream 52bp 11275 chr9 20823039 20823039 1 + T C COAD 20823040 + 20823020 20823060 41 CTATTTCTCAAGTGTTGAATGAATGCACCAAGCCTGATCAA CTATTTCTCAAGTGTTGAACGAATGCACCAAGCCTGATCAA < 41bp 0.738546500867804 0.536506063470601 NA NA prediction 0.404080874794406 Functional Loss - FOCAD ENSG00000188352 CDS Human protein_coding chr9:20823040 chr9:20823039 synonymous SNV . 0 20 hm7G_associated_SNPs_11903 0 0 1 0 2 FOCAD chr9:20823114 5'GT 20823114 Upstream 76bp 11276 chr15 41862451 41862451 1 + A G SARC 41862452 + 41862432 41862472 41 CTTTAGGCAAGCCTTTGACAGTGTCATGGCCCGGGGAGAGC CTTTAGGCAAGCCTTTGACGGTGTCATGGCCCGGGGAGAGC < 41bp 0.756925473264306 0.554889021302986 NA NA prediction 0.404072903922639 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862452 chr15:41862451 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11904 0 0 1 0 2 TYRO3 chr15:41862438 3'AG 41862438 Downstream 14bp 11277 chr15 41862451 41862451 1 + A G SARC 41862452 + 41862432 41862472 41 CTTTAGGCAAGCCTTTGACAGTGTCATGGCCCGGGGAGAGC CTTTAGGCAAGCCTTTGACGGTGTCATGGCCCGGGGAGAGC < 41bp 0.756925473264306 0.554889021302986 NA NA prediction 0.404072903922639 Functional Loss - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862452 chr15:41862451 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11904 0 0 1 0 2 TYRO3 chr15:41862538 5'GT 41862538 Upstream 88bp 11278 chr11 63671580 63671580 1 + T G SKCM 63671581 + 63671561 63671601 41 CCCAACAAGGCCTCTGGGCTGCCCCCCACGGAGAGTAACTG CCCAACAAGGCCTCTGGGCGGCCCCCCACGGAGAGTAACTG < 41bp 0.702036193931415 0.349494522639597 NA NA prediction 0.404072387862831 Functional Loss - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63671581 chr11:63671580 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_11905 0 0 0 0 1 MARK2 chr11:63671570 3'AG 63671570 Downstream 11bp 11279 chr10 90682121 90682121 1 + T C UCEC 90682122 + 90682102 90682142 41 TCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTGCT TCTTCAGGCTCACCAATGCCGGCATGCTTGAGGTTTCTGCT < 41bp 0.704887310122451 0.502868326431148 NA NA prediction 0.404037967382607 Functional Loss - STAMBPL1 ENSG00000138134 CDS Human protein_coding chr10:90682122 chr10:90682121 synonymous SNV . 0 20 hm7G_associated_SNPs_11906 0 0 1 0 1 STAMBPL1 chr10:90682094 3'AG 90682094 Downstream 28bp 11280 chr22 51041917 51041917 1 + T C COAD 51041918 + 51041898 51041938 41 ACCCTCCGTCTGACCACACTGGGGGCCCAGGTGAGTGCCCG ACCCTCCGTCTGACCACACCGGGGGCCCAGGTGAGTGCCCG < 41bp 0.729406436608674 0.52739459847074 NA NA prediction 0.404023676275867 Functional Loss - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51041918 chr22:51041917 nonsynonymous SNV 0.868 0 20 hm7G_associated_SNPs_11907 0 0 0 0 1 MAPK8IP2 chr22:51041927 5'GT 51041927 Upstream 11bp 11281 chr1 210267703 210267703 1 + T C PRAD 210267704 + 210267684 210267724 41 ATGAGAAGAACACCCCCGCTGGATGAATTGCAGCCACCACC ATGAGAAGAACACCCCCGCCGGATGAATTGCAGCCACCACC < 41bp 0.740999194180158 0.539025583597408 NA NA prediction 0.4039472211655 Functional Loss - SYT14 ENSG00000143469 CDS Human protein_coding chr1:210267704 chr1:210267703 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_11908 0 0 0 0 1 SYT14 chr1:210267667 3'AG 210267667 Downstream 37bp 11282 chr22 40058880 40058880 1 + A G THYM 40058881 + 40058861 40058901 41 CCTCTTCTCTCCCGAGAACAGGTGGGCAGGGCCAGGCCTGG CCTCTTCTCTCCCGAGAACGGGTGGGCAGGGCCAGGCCTGG < 41bp 0.750642382602698 0.548688325194502 NA NA prediction 0.403908114816393 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40058881 chr22:40058880 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_11910 0 0 0 0 2 CACNA1I chr22:40058781 3'AG 40058781 Downstream 100bp 11283 chr22 40058880 40058880 1 + A G THYM 40058881 + 40058861 40058901 41 CCTCTTCTCTCCCGAGAACAGGTGGGCAGGGCCAGGCCTGG CCTCTTCTCTCCCGAGAACGGGTGGGCAGGGCCAGGCCTGG < 41bp 0.750642382602698 0.548688325194502 NA NA prediction 0.403908114816393 Functional Loss - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40058881 chr22:40058880 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_11910 0 0 0 0 2 CACNA1I chr22:40058881 5'GT 40058881 Upstream 2bp 11284 chr11 46722632 46722632 1 + A G rs144460540 46722633 + 46722613 46722653 41 GAGCTGCTCTTGGAGGGGAAGAAGGCGCTGCAACTCGGTGA GAGCTGCTCTTGGAGGGGAGGAAGGCGCTGCAACTCGGTGA < 41bp 0.701947270655754 0.493467958168679 NA NA prediction 0.403894541311508 Functional Loss - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46722633 chr11:46722632 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_11912 0 0 1 0 2 ZNF408 chr11:46722649 5'GT 46722649 Upstream 18bp 11285 chr11 46722632 46722632 1 + A G rs144460540 46722633 + 46722613 46722653 41 GAGCTGCTCTTGGAGGGGAAGAAGGCGCTGCAACTCGGTGA GAGCTGCTCTTGGAGGGGAGGAAGGCGCTGCAACTCGGTGA < 41bp 0.701947270655754 0.493467958168679 NA NA prediction 0.403894541311508 Functional Loss - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46722633 chr11:46722632 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_11912 0 0 1 0 2 ZNF408 chr11:46722691 5'GT 46722691 Upstream 60bp 11286 chr2 182394308 182394308 1 + T C rs1143675 182394309 + 182394289 182394329 41 ATGGCTCCCAATGTTAGTGTGGAAATAATGGTACCAAATTC ATGGCTCCCAATGTTAGTGCGGAAATAATGGTACCAAATTC < 41bp 0.746939104906106 0.54499514526543 NA NA prediction 0.403887919281352 Functional Loss - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182394309 chr2:182394308 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11914 1 0 0 0 2 ITGA4 chr2:182394268 3'AG 182394268 Downstream 41bp 11287 chr2 182394308 182394308 1 + T C rs1143675 182394309 + 182394289 182394329 41 ATGGCTCCCAATGTTAGTGTGGAAATAATGGTACCAAATTC ATGGCTCCCAATGTTAGTGCGGAAATAATGGTACCAAATTC < 41bp 0.746939104906106 0.54499514526543 NA NA prediction 0.403887919281352 Functional Loss - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182394309 chr2:182394308 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11914 1 0 0 0 2 ITGA4 chr2:182394375 5'GT 182394375 Upstream 68bp 11288 chr1 113238042 113238042 1 + T C LUSC 113238043 + 113238023 113238063 41 TTATCTGCATCTCAGGTGGTGAAGCACTTGCCCAAAGCCCA TTATCTGCATCTCAGGTGGCGAAGCACTTGCCCAAAGCCCA < 41bp 0.757677724504963 0.555752755495367 NA NA prediction 0.403849938019192 Functional Loss - MOV10 ENSG00000155363 CDS Human protein_coding chr1:113238043 chr1:113238042 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11917 0 0 0 0 1 MOV10 chr1:113238038 3'AG 113238038 Downstream 5bp 11289 chr20 31389148 31389148 1 + T C UCEC 31389149 + 31389129 31389169 41 ACTCACGCCCCAAGGAGGGTGATGACCGGCCGTTCTTCTGG ACTCACGCCCCAAGGAGGGCGATGACCGGCCGTTCTTCTGG < 41bp 0.706791721786263 0.504873679590112 NA NA prediction 0.403836084392302 Functional Loss - DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31389149 chr20:31389148 synonymous SNV . 0 20 hm7G_associated_SNPs_11918 0 0 1 0 2 DNMT3B chr20:31389084 3'AG 31389084 Downstream 65bp 11290 chr20 31389148 31389148 1 + T C UCEC 31389149 + 31389129 31389169 41 ACTCACGCCCCAAGGAGGGTGATGACCGGCCGTTCTTCTGG ACTCACGCCCCAAGGAGGGCGATGACCGGCCGTTCTTCTGG < 41bp 0.706791721786263 0.504873679590112 NA NA prediction 0.403836084392302 Functional Loss - DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31389149 chr20:31389148 synonymous SNV . 0 20 hm7G_associated_SNPs_11918 0 0 1 0 2 DNMT3B chr20:31389232 5'GT 31389232 Upstream 85bp 11291 chr12 96912804 96912804 1 + T C rs548808752 96912805 + 96912785 96912825 41 GCGCTACTCTCTACACAGCTGTTTGCCAGTGCTGCTATGAC GCGCTACTCTCTACACAGCCGTTTGCCAGTGCTGCTATGAC < 41bp 0.702436905519901 0.500528586236039 NA NA prediction 0.403816638567724 Functional Loss - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:96912805 chr12:96912804 synonymous SNV . 0 20 hm7G_associated_SNPs_11920 0 0 0 0 2 CFAP54 chr12:96912706 3'AG 96912706 Downstream 99bp 11292 chr12 96912804 96912804 1 + T C rs548808752 96912805 + 96912785 96912825 41 GCGCTACTCTCTACACAGCTGTTTGCCAGTGCTGCTATGAC GCGCTACTCTCTACACAGCCGTTTGCCAGTGCTGCTATGAC < 41bp 0.702436905519901 0.500528586236039 NA NA prediction 0.403816638567724 Functional Loss - CFAP54 ENSG00000188596 CDS Human protein_coding chr12:96912805 chr12:96912804 synonymous SNV . 0 20 hm7G_associated_SNPs_11920 0 0 0 0 2 CFAP54 chr12:96912849 5'GT 96912849 Upstream 46bp 11293 chr17 12016656 12016656 1 + T C UCEC 12016657 + 12016637 12016677 41 TTGCCAAGACAAGAGATGCTGGCTGTAGGCCATACATGGCA TTGCCAAGACAAGAGATGCCGGCTGTAGGCCATACATGGCA < 41bp 0.760381105829202 0.558475510619595 NA NA prediction 0.403811190419214 Functional Loss - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12016657 chr17:12016656 synonymous SNV . 0 20 hm7G_associated_SNPs_11922 0 0 1 0 1 MAP2K4 chr17:12016677 5'GT 12016677 Upstream 22bp 11294 chr19 54656696 54656696 1 + T C UCEC 54656697 + 54656677 54656717 41 GTGGAATTCTACCAGCGCCTGTCGACCGAGACACTCTTCTT GTGGAATTCTACCAGCGCCCGTCGACCGAGACACTCTTCTT < 41bp 0.707307030419081 0.505407019567627 NA NA prediction 0.403800021702908 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656697 chr19:54656696 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_11923 0 0 1 0 3 CNOT3 chr19:54656604 3'AG 54656604 Downstream 93bp 11295 chr19 54656696 54656696 1 + T C UCEC 54656697 + 54656677 54656717 41 GTGGAATTCTACCAGCGCCTGTCGACCGAGACACTCTTCTT GTGGAATTCTACCAGCGCCCGTCGACCGAGACACTCTTCTT < 41bp 0.707307030419081 0.505407019567627 NA NA prediction 0.403800021702908 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656697 chr19:54656696 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_11923 0 0 1 0 3 CNOT3 chr19:54656608 3'AG 54656608 Downstream 89bp 11296 chr19 54656696 54656696 1 + T C UCEC 54656697 + 54656677 54656717 41 GTGGAATTCTACCAGCGCCTGTCGACCGAGACACTCTTCTT GTGGAATTCTACCAGCGCCCGTCGACCGAGACACTCTTCTT < 41bp 0.707307030419081 0.505407019567627 NA NA prediction 0.403800021702908 Functional Loss - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656697 chr19:54656696 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_11923 0 0 1 0 3 CNOT3 chr19:54656736 5'GT 54656736 Upstream 41bp 11297 chr7 150710887 150710887 1 - A G rs550098275 150710886 - 150710866 150710906 41 ACATCGCCGCAGACAAACATGTGGCCCCGCTCGAGGCACAG ACATCGCCGCAGACAAACACGTGGCCCCGCTCGAGGCACAG < 41bp 0.716271954601985 0.51437423567587 NA NA prediction 0.40379543785223 Functional Loss - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150710886 chr7:150710887 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_11924 0 0 0 0 1 NOS3 chr7:150710818 5'GT 150710818 Upstream 70bp 11298 chr7 135269655 135269655 1 + T C rs58392569 135269656 + 135269636 135269676 41 AACGTTTTCCTGTTCCTCATGGAATCTGTAGTGGTATCAGA AACGTTTTCCTGTTCCTCACGGAATCTGTAGTGGTATCAGA < 41bp 0.742237559946126 0.540342135579748 NA NA prediction 0.403790848732756 Functional Loss - NUP205 ENSG00000155561 CDS Human protein_coding chr7:135269656 chr7:135269655 nonsynonymous SNV 0.446 0 20 hm7G_associated_SNPs_11925 0 0 1 0 1 NUP205 chr7:135269580 3'AG 135269580 Downstream 76bp 11299 chr11 61906374 61906374 1 + T C rs1675126 61906375 + 61906355 61906395 41 CACAGGTCCCTGAGAACAATGGAAATAACTCGTGGCCCCAC CACAGGTCCCTGAGAACAACGGAAATAACTCGTGGCCCCAC < 41bp 0.711491067451847 0.509603103645486 NA NA prediction 0.403775927612722 Functional Loss - INCENP ENSG00000149503 CDS Human protein_coding chr11:61906375 chr11:61906374 synonymous SNV . 0 20 hm7G_associated_SNPs_11926 0 0 1 0 1 INCENP chr11:61906360 3'AG 61906360 Downstream 15bp 11300 chr18 11752900 11752900 1 + T C CESC 11752901 + 11752881 11752921 41 GTCAAACAGATGAGGATCCTGCACGTCAATGGGTTTAATCC GTCAAACAGATGAGGATCCCGCACGTCAATGGGTTTAATCC < 41bp 0.758148027454626 0.556262177036133 NA NA prediction 0.403771700836986 Functional Loss - GNAL ENSG00000141404 CDS Human protein_coding chr18:11752901 chr18:11752900 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11927 0 0 0 0 2 GNAL chr18:11752852 3'AG 11752852 Downstream 49bp 11301 chr18 11752900 11752900 1 + T C CESC 11752901 + 11752881 11752921 41 GTCAAACAGATGAGGATCCTGCACGTCAATGGGTTTAATCC GTCAAACAGATGAGGATCCCGCACGTCAATGGGTTTAATCC < 41bp 0.758148027454626 0.556262177036133 NA NA prediction 0.403771700836986 Functional Loss - GNAL ENSG00000141404 CDS Human protein_coding chr18:11752901 chr18:11752900 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_11927 0 0 0 0 2 GNAL chr18:11752924 5'GT 11752924 Upstream 25bp 11302 chrX 36122751 36122751 1 + T C UCEC 36122752 + 36122732 36122772 41 TGAAAGAATTTTGCTTAGTTGGATGAACATAAATTATGAGA TGAAAGAATTTTGCTTAGTCGGATGAACATAAATTATGAGA < 41bp 0.716909332126148 0.515033144770395 NA NA prediction 0.403752374711506 Functional Loss - CFAP47 ENSG00000176034 CDS Human other chrX:36122752 chrX:36122751 nonsynonymous SNV 0.609 5 20 hm7G_associated_SNPs_11928 0 0 0 0 1 CFAP47 chrX:36122808 5'GT 36122808 Upstream 58bp 11303 chr3 14183183 14183183 1 + T C UCEC 14183184 + 14183164 14183204 41 TCGCTGACCCTGCTGACCGTGGCGGCTGGCTGGCTCTTCTA TCGCTGACCCTGCTGACCGCGGCGGCTGGCTGGCTCTTCTA < 41bp 0.72308577017716 0.521214474495298 NA NA prediction 0.403742591363724 Functional Loss - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14183184 chr3:14183183 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_11929 0 0 1 0 1 TMEM43 chr3:14183093 3'AG 14183093 Downstream 91bp 11304 chrX 69673592 69673592 1 + A G HNSC 69673593 + 69673573 69673613 41 TCTCCTTCATCCTGGCAGGAGGCCCAGCTGACCTGAGTGGG TCTCCTTCATCCTGGCAGGGGGCCCAGCTGACCTGAGTGGG < 41bp 0.724277093496017 0.522407286300519 NA NA prediction 0.403739614390995 Functional Loss - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69673593 chrX:69673592 synonymous SNV . 0 20 hm7G_associated_SNPs_11931 0 0 0 0 1 DLG3 chrX:69673643 5'GT 69673643 Upstream 52bp 11305 chr15 83790720 83790720 1 + T C COAD 83790721 + 83790701 83790741 41 TGGGTTGGATCTATTATTATGAGTGTTGTTGTTTTTGTGCC TGGGTTGGATCTATTATTACGAGTGTTGTTGTTTTTGTGCC < 41bp 0.701863026208993 0.494511777364328 NA NA prediction 0.403726052417986 Functional Loss - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83790721 chr15:83790720 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11932 0 0 0 0 2 TM6SF1 chr15:83790673 3'AG 83790673 Downstream 48bp 11306 chr15 83790720 83790720 1 + T C COAD 83790721 + 83790701 83790741 41 TGGGTTGGATCTATTATTATGAGTGTTGTTGTTTTTGTGCC TGGGTTGGATCTATTATTACGAGTGTTGTTGTTTTTGTGCC < 41bp 0.701863026208993 0.494511777364328 NA NA prediction 0.403726052417986 Functional Loss - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83790721 chr15:83790720 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_11932 0 0 0 0 2 TM6SF1 chr15:83790755 5'GT 83790755 Upstream 36bp 11307 chr17 28811295 28811295 1 + T G UCEC 28811296 + 28811276 28811316 41 TGTTTGAGACAATGGCGATTGAGATTGAACAACTTTTGGCA TGTTTGAGACAATGGCGATGGAGATTGAACAACTTTTGGCA < 41bp 0.701860342069311 0.368014009882216 NA NA prediction 0.403720684138623 Functional Loss - GOSR1 ENSG00000108587 CDS Human protein_coding chr17:28811296 chr17:28811295 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_11934 0 0 1 0 1 GOSR1 chr17:28811232 3'AG 28811232 Downstream 64bp 11308 chr2 197540913 197540913 1 + T C rs78494199 197540914 + 197540894 197540934 41 TTTCAAGAACAAAACTTATTGCTGGATGCAGCCCATGCCAG TTTCAAGAACAAAACTTATCGCTGGATGCAGCCCATGCCAG < 41bp 0.742311470111264 0.540463080173542 NA NA prediction 0.403696779875444 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197540914 chr2:197540913 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_11937 0 0 1 0 2 CCDC150 chr2:197540867 3'AG 197540867 Downstream 47bp 11309 chr2 197540913 197540913 1 + T C rs78494199 197540914 + 197540894 197540934 41 TTTCAAGAACAAAACTTATTGCTGGATGCAGCCCATGCCAG TTTCAAGAACAAAACTTATCGCTGGATGCAGCCCATGCCAG < 41bp 0.742311470111264 0.540463080173542 NA NA prediction 0.403696779875444 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197540914 chr2:197540913 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_11937 0 0 1 0 2 CCDC150 chr2:197540991 5'GT 197540991 Upstream 79bp 11310 chr4 140275181 140275181 1 + T C UCEC 140275182 + 140275162 140275202 41 TGTGTGTTTGTACTCTAGGTGGCAATCATAGAAGAGTTAGT TGTGTGTTTGTACTCTAGGCGGCAATCATAGAAGAGTTAGT < 41bp 0.725343675155072 0.523497010021043 NA NA prediction 0.403693330268058 Functional Loss - NAA15 ENSG00000164134 CDS Human protein_coding chr4:140275182 chr4:140275181 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11938 0 0 1 0 2 NAA15 chr4:140275180 3'AG 140275180 Downstream 2bp 11311 chr4 140275181 140275181 1 + T C UCEC 140275182 + 140275162 140275202 41 TGTGTGTTTGTACTCTAGGTGGCAATCATAGAAGAGTTAGT TGTGTGTTTGTACTCTAGGCGGCAATCATAGAAGAGTTAGT < 41bp 0.725343675155072 0.523497010021043 NA NA prediction 0.403693330268058 Functional Loss - NAA15 ENSG00000164134 CDS Human protein_coding chr4:140275182 chr4:140275181 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_11938 0 0 1 0 2 NAA15 chr4:140275252 5'GT 140275252 Upstream 72bp 11312 chr22 30765561 30765561 1 + T C UCEC 30765562 + 30765542 30765582 41 TGGGACAGCCTGCTGAGGCTGGGCACGCTCCACCAGCAGCC TGGGACAGCCTGCTGAGGCCGGGCACGCTCCACCAGCAGCC < 41bp 0.749389932256789 0.547546687134989 NA NA prediction 0.4036864902436 Functional Loss - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30765562 chr22:30765561 nonsynonymous SNV 0.140 3 20 hm7G_associated_SNPs_11939 0 0 0 0 1 CCDC157 chr22:30765592 5'GT 30765592 Upstream 32bp 11313 chr18 29115361 29115361 1 + T C PAAD 29115362 + 29115342 29115382 41 ACATACACTGTAAAGATTGTGGCCATATCAGAAGGTAAGTT ACATACACTGTAAAGATTGCGGCCATATCAGAAGGTAAGTT < 41bp 0.71811498247341 0.516276371271354 NA NA prediction 0.403677222404111 Functional Loss - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29115362 chr18:29115361 nonsynonymous SNV 0.962 1 20 hm7G_associated_SNPs_11942 0 0 1 0 1 DSG2 chr18:29115375 5'GT 29115375 Upstream 15bp 11314 chr20 30414612 30414612 1 + A G UCEC 30414613 + 30414593 30414633 41 CACACAGCATCGAGGGCGGAGAGCTCTTCGAGAGGATTGTG CACACAGCATCGAGGGCGGGGAGCTCTTCGAGAGGATTGTG < 41bp 0.701831300131219 0.487097315579158 NA NA prediction 0.403662600262437 Functional Loss - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414613 chr20:30414612 synonymous SNV . 0 20 hm7G_associated_SNPs_11944 0 0 1 0 1 MYLK2 chr20:30414600 3'AG 30414600 Downstream 13bp 11315 chr5 149914474 149914474 1 + T C UCEC 149914475 + 149914455 149914495 41 GATCTGCTGCTGTCGTATGTGAAGGAGTTCTGGTGGTTCCC GATCTGCTGCTGTCGTATGCGAAGGAGTTCTGGTGGTTCCC < 41bp 0.767505109962098 0.565676505740521 NA NA prediction 0.403657208443155 Functional Loss - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149914475 chr5:149914474 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_11945 0 0 0 0 1 NDST1 chr5:149914429 3'AG 149914429 Downstream 46bp 11316 chr10 1142152 1142152 1 + A G PRAD 1142153 + 1142133 1142173 41 ATCTGGAGATACGCGGTGCAGCTGCCGACACCCCAGCCTGT ATCTGGAGATACGCGGTGCGGCTGCCGACACCCCAGCCTGT < 41bp 0.738462085502113 0.53663680477947 NA NA prediction 0.403650561445284 Functional Loss - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1142153 chr10:1142152 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_11946 0 0 1 0 1 WDR37 chr10:1142110 3'AG 1142110 Downstream 43bp 11317 chr17 73566503 73566503 1 + T C UCEC 73566504 + 73566484 73566524 41 AAGTCCCTCAAGAAGTCCTTGCGTCAGTCATTCCGCCGGAT AAGTCCCTCAAGAAGTCCTCGCGTCAGTCATTCCGCCGGAT < 41bp 0.753997910409449 0.552174843085977 NA NA prediction 0.403646134646944 Functional Loss - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73566504 chr17:73566503 nonsynonymous SNV 0.911 4 20 hm7G_associated_SNPs_11947 0 0 1 0 2 LLGL2 chr17:73566429 3'AG 73566429 Downstream 75bp 11318 chr17 73566503 73566503 1 + T C UCEC 73566504 + 73566484 73566524 41 AAGTCCCTCAAGAAGTCCTTGCGTCAGTCATTCCGCCGGAT AAGTCCCTCAAGAAGTCCTCGCGTCAGTCATTCCGCCGGAT < 41bp 0.753997910409449 0.552174843085977 NA NA prediction 0.403646134646944 Functional Loss - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73566504 chr17:73566503 nonsynonymous SNV 0.911 4 20 hm7G_associated_SNPs_11947 0 0 1 0 2 LLGL2 chr17:73566579 5'GT 73566579 Upstream 77bp 11319 chr17 60674030 60674030 1 + T C rs56095309 60674031 + 60674011 60674051 41 ATTACTTTTCACTGGATACTGACTCGTAAGTGCTGTGCTGT ATTACTTTTCACTGGATACCGACTCGTAAGTGCTGTGCTGT < 41bp 0.71667902797257 0.514858217691505 NA NA prediction 0.403641620562129 Functional Loss - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60674031 chr17:60674030 synonymous SNV . 0 20 hm7G_associated_SNPs_11948 0 0 1 0 2 TLK2 chr17:60673946 3'AG 60673946 Downstream 85bp 11320 chr17 60674030 60674030 1 + T C rs56095309 60674031 + 60674011 60674051 41 ATTACTTTTCACTGGATACTGACTCGTAAGTGCTGTGCTGT ATTACTTTTCACTGGATACCGACTCGTAAGTGCTGTGCTGT < 41bp 0.71667902797257 0.514858217691505 NA NA prediction 0.403641620562129 Functional Loss - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60674031 chr17:60674030 synonymous SNV . 0 20 hm7G_associated_SNPs_11948 0 0 1 0 2 TLK2 chr17:60674035 5'GT 60674035 Upstream 6bp 11321 chr14 102910140 102910140 1 + A G KICH 102910141 + 102910121 102910161 41 AGCTTCTGTCCGGAAGGCGAGCAGTGGAAGTGTGACATTGT AGCTTCTGTCCGGAAGGCGGGCAGTGGAAGTGTGACATTGT < 41bp 0.713900374614705 0.512091106882478 NA NA prediction 0.403618535464454 Functional Loss - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102910141 chr14:102910140 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_11949 0 0 0 0 1 TECPR2 chr14:102910164 5'GT 102910164 Upstream 25bp 11322 chr1 196659357 196659357 1 + T C STAD 196659358 + 196659338 196659378 41 CTGGTCTCCTACTCCCAGATGCATCCGTGTCAGTAAGTACA CTGGTCTCCTACTCCCAGACGCATCCGTGTCAGTAAGTACA < 41bp 0.742960607110694 0.541158850700498 NA NA prediction 0.403603512820394 Functional Loss - CFH ENSG00000000971 CDS Human protein_coding chr1:196659358 chr1:196659357 nonsynonymous SNV 0.006 4 20 hm7G_associated_SNPs_11951 0 0 1 0 1 CFH chr1:196659369 5'GT 196659369 Upstream 13bp 11323 chr22 42269866 42269866 1 + T C STAD 42269867 + 42269847 42269887 41 ATGATGGGGCAAGAGAAAGTGCCCATTAAGCAGGTACCTGG ATGATGGGGCAAGAGAAAGCGCCCATTAAGCAGGTACCTGG < 41bp 0.701800318700927 0.483878964342692 NA NA prediction 0.403600637401854 Functional Loss - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42269867 chr22:42269866 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_11952 0 0 1 0 1 SREBF2 chr22:42269802 3'AG 42269802 Downstream 65bp 11324 chr15 40502390 40502390 1 + T C rs571594522 40502391 + 40502371 40502411 41 GGGTGGCGCCAAGAAACTCTGCAGAATTAACAGTAATAAAG GGGTGGCGCCAAGAAACTCCGCAGAATTAACAGTAATAAAG < 41bp 0.744340095667365 0.542542197430107 NA NA prediction 0.403595796474516 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40502391 chr15:40502390 synonymous SNV . 0 20 hm7G_associated_SNPs_11953 0 0 1 0 2 BUB1B chr15:40502311 3'AG 40502311 Downstream 80bp 11325 chr15 40502390 40502390 1 + T C rs571594522 40502391 + 40502371 40502411 41 GGGTGGCGCCAAGAAACTCTGCAGAATTAACAGTAATAAAG GGGTGGCGCCAAGAAACTCCGCAGAATTAACAGTAATAAAG < 41bp 0.744340095667365 0.542542197430107 NA NA prediction 0.403595796474516 Functional Loss - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40502391 chr15:40502390 synonymous SNV . 0 20 hm7G_associated_SNPs_11953 0 0 1 0 2 BUB1B chr15:40502411 5'GT 40502411 Upstream 22bp 11326 chr8 144461114 144461114 1 + A G COAD 144461115 + 144461095 144461135 41 ACTGGGGTCCCGGCCCAGCAGCGTGCCCTGGCCTTCGAGAA ACTGGGGTCCCGGCCCAGCGGCGTGCCCTGGCCTTCGAGAA < 41bp 0.793814192630024 0.592021639048817 NA NA prediction 0.403585107162415 Functional Loss - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144461115 chr8:144461114 nonsynonymous SNV 0.965 4 20 hm7G_associated_SNPs_11955 0 0 0 0 1 RHPN1 chr8:144461082 3'AG 144461082 Downstream 33bp 11327 chr11 111864294 111864294 1 + T C UCEC 111864295 + 111864275 111864315 41 AAGCACTCCGGAAACTCTCTGATGTCAGTTACCACCAGGTC AAGCACTCCGGAAACTCTCCGATGTCAGTTACCACCAGGTC < 41bp 0.758869817664094 0.557079274163757 NA NA prediction 0.403581087000675 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111864295 chr11:111864294 synonymous SNV . 0 20 hm7G_associated_SNPs_11956 0 0 0 0 2 DIXDC1 chr11:111864220 3'AG 111864220 Downstream 75bp 11328 chr11 111864294 111864294 1 + T C UCEC 111864295 + 111864275 111864315 41 AAGCACTCCGGAAACTCTCTGATGTCAGTTACCACCAGGTC AAGCACTCCGGAAACTCTCCGATGTCAGTTACCACCAGGTC < 41bp 0.758869817664094 0.557079274163757 NA NA prediction 0.403581087000675 Functional Loss - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111864295 chr11:111864294 synonymous SNV . 0 20 hm7G_associated_SNPs_11956 0 0 0 0 2 DIXDC1 chr11:111864312 5'GT 111864312 Upstream 19bp 11329 chr7 73462858 73462858 1 + A G COAD 73462859 + 73462839 73462879 41 GCCCCCAGGCAGCAGCAGCAGCGGCAGCTAAAGCAGCAGCA GCCCCCAGGCAGCAGCAGCGGCGGCAGCTAAAGCAGCAGCA < 41bp 0.725687210939595 0.523898731118176 NA NA prediction 0.403576959642839 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73462859 chr7:73462858 synonymous SNV . 0 20 hm7G_associated_SNPs_11957 0 0 0 0 2 ELN chr7:73462833 3'AG 73462833 Downstream 26bp 11330 chr7 73462858 73462858 1 + A G COAD 73462859 + 73462839 73462879 41 GCCCCCAGGCAGCAGCAGCAGCGGCAGCTAAAGCAGCAGCA GCCCCCAGGCAGCAGCAGCGGCGGCAGCTAAAGCAGCAGCA < 41bp 0.725687210939595 0.523898731118176 NA NA prediction 0.403576959642839 Functional Loss - ELN ENSG00000049540 CDS Human protein_coding chr7:73462859 chr7:73462858 synonymous SNV . 0 20 hm7G_associated_SNPs_11957 0 0 0 0 2 ELN chr7:73462886 5'GT 73462886 Upstream 29bp 11331 chr1 11894635 11894635 1 + T G KIRC 11894636 + 11894616 11894656 41 CTGGAATGGGAGACAGAGGTGGAAATGGACAAGTAAGGCCA CTGGAATGGGAGACAGAGGGGGAAATGGACAAGTAAGGCCA < 41bp 0.914748460913115 0.712961006762288 NA NA prediction 0.403574908301654 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11894636 chr1:11894635 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_11958 0 0 1 0 2 CLCN6 chr1:11894541 3'AG 11894541 Downstream 95bp 11332 chr1 11894635 11894635 1 + T G KIRC 11894636 + 11894616 11894656 41 CTGGAATGGGAGACAGAGGTGGAAATGGACAAGTAAGGCCA CTGGAATGGGAGACAGAGGGGGAAATGGACAAGTAAGGCCA < 41bp 0.914748460913115 0.712961006762288 NA NA prediction 0.403574908301654 Functional Loss - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11894636 chr1:11894635 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_11958 0 0 1 0 2 CLCN6 chr1:11894647 5'GT 11894647 Upstream 13bp 11333 chr20 31654682 31654682 1 + A G LGG 31654683 + 31654663 31654703 41 CTGGCAGCTTTGCTCCCTGAGGTGAGTGACGCTCTCATGGG CTGGCAGCTTTGCTCCCTGGGGTGAGTGACGCTCTCATGGG < 41bp 0.701785517164215 0.490404014373156 NA NA prediction 0.403571034328431 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31654683 chr20:31654682 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_11959 0 0 0 0 2 BPIFB3 chr20:31654630 3'AG 31654630 Downstream 53bp 11334 chr20 31654682 31654682 1 + A G LGG 31654683 + 31654663 31654703 41 CTGGCAGCTTTGCTCCCTGAGGTGAGTGACGCTCTCATGGG CTGGCAGCTTTGCTCCCTGGGGTGAGTGACGCTCTCATGGG < 41bp 0.701785517164215 0.490404014373156 NA NA prediction 0.403571034328431 Functional Loss - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31654683 chr20:31654682 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_11959 0 0 0 0 2 BPIFB3 chr20:31654683 5'GT 31654683 Upstream 2bp 11335 chr15 45048570 45048570 1 + A G LIHC 45048571 + 45048551 45048591 41 ATTTGATATTCCCAGGAGGAGCTTGCCATCCAACAGGGTCA ATTTGATATTCCCAGGAGGGGCTTGCCATCCAACAGGGTCA < 41bp 0.724022921460787 0.522239277114692 NA NA prediction 0.403567288692189 Functional Loss - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45048571 chr15:45048570 nonsynonymous SNV 0.411 1 20 hm7G_associated_SNPs_11960 0 0 0 0 2 TRIM69 chr15:45048566 3'AG 45048566 Downstream 5bp 11336 chr15 45048570 45048570 1 + A G LIHC 45048571 + 45048551 45048591 41 ATTTGATATTCCCAGGAGGAGCTTGCCATCCAACAGGGTCA ATTTGATATTCCCAGGAGGGGCTTGCCATCCAACAGGGTCA < 41bp 0.724022921460787 0.522239277114692 NA NA prediction 0.403567288692189 Functional Loss - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45048571 chr15:45048570 nonsynonymous SNV 0.411 1 20 hm7G_associated_SNPs_11960 0 0 0 0 2 TRIM69 chr15:45048661 5'GT 45048661 Upstream 92bp 11337 chr2 219677035 219677035 1 + T C LAML 219677036 + 219677016 219677056 41 TCTATACGGATGCTTTCAATGAGGTGATTGATGACTTTATG TCTATACGGATGCTTTCAACGAGGTGATTGATGACTTTATG < 41bp 0.743583999386446 0.541813262365624 NA NA prediction 0.403541474041645 Functional Loss - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677036 chr2:219677035 stoploss . 0 20 hm7G_associated_SNPs_11961 0 0 0 0 1 CYP27A1 chr2:219676945 3'AG 219676945 Downstream 91bp 11338 chr20 30674563 30674563 1 + T G LUSC 30674564 + 30674544 30674584 41 CTGGTCAAACTTCATGCGGTGGTCACCAAGGAGCCCATCTA CTGGTCAAACTTCATGCGGGGGTCACCAAGGAGCCCATCTA < 41bp 0.916998616635291 0.715235759281068 NA NA prediction 0.403525714708447 Functional Loss - HCK ENSG00000101336 CDS Human protein_coding chr20:30674564 chr20:30674563 nonsynonymous SNV 0.075 4 20 hm7G_associated_SNPs_11965 0 0 0 0 1 HCK chr20:30674610 5'GT 30674610 Upstream 48bp 11339 chr1 211534493 211534493 1 + T G UCEC 211534494 + 211534474 211534514 41 TCCTTTTAAGCACTATGGCTGTGCTGTAACGGTATGGAATG TCCTTTTAAGCACTATGGCGGTGCTGTAACGGTATGGAATG < 41bp 0.701758834435331 0.373668149531303 NA NA prediction 0.403517668870662 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211534494 chr1:211534493 nonsynonymous SNV 0.951 5 20 hm7G_associated_SNPs_11966 0 0 0 0 2 TRAF5 chr1:211534430 3'AG 211534430 Downstream 64bp 11340 chr1 211534493 211534493 1 + T G UCEC 211534494 + 211534474 211534514 41 TCCTTTTAAGCACTATGGCTGTGCTGTAACGGTATGGAATG TCCTTTTAAGCACTATGGCGGTGCTGTAACGGTATGGAATG < 41bp 0.701758834435331 0.373668149531303 NA NA prediction 0.403517668870662 Functional Loss - TRAF5 ENSG00000082512 CDS Human protein_coding chr1:211534494 chr1:211534493 nonsynonymous SNV 0.951 5 20 hm7G_associated_SNPs_11966 0 0 0 0 2 TRAF5 chr1:211534504 5'GT 211534504 Upstream 12bp 11341 chr22 19471527 19471527 1 + A G LIHC 19471528 + 19471508 19471548 41 AAGCGCACACGGTTAGAAGAGGTGAGTTTGGGTCTCTCACA AAGCGCACACGGTTAGAAGGGGTGAGTTTGGGTCTCTCACA < 41bp 0.730063766206236 0.528312252172265 NA NA prediction 0.403503028067941 Functional Loss - CDC45 ENSG00000093009 CDS Human protein_coding chr22:19471528 chr22:19471527 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_11968 0 0 1 0 1 CDC45 chr22:19471528 5'GT 19471528 Upstream 2bp 11342 chr5 109191007 109191007 1 + T C PAAD 109191008 + 109190988 109191028 41 TTGCCTTGTGACATTCATCTGGTTAATTTGAGAACAATACA TTGCCTTGTGACATTCATCCGGTTAATTTGAGAACAATACA < 41bp 0.743018212332904 0.54126684807383 NA NA prediction 0.40350272851815 Functional Loss - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109191008 chr5:109191007 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_11969 0 0 0 0 1 MAN2A1 chr5:109191035 5'GT 109191035 Upstream 29bp 11343 chr13 42803263 42803263 1 + T C rs17646069 42803264 + 42803244 42803284 41 ATACCGAAAGTGGGTCATGTGAAGCGAATTCTCCAGGGAAT ATACCGAAAGTGGGTCATGCGAAGCGAATTCTCCAGGGAAT < 41bp 0.715066737284812 0.513319410573152 NA NA prediction 0.403494653423321 Functional Loss - DGKH ENSG00000102780 CDS Human protein_coding chr13:42803264 chr13:42803263 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_11971 0 0 1 1 1 DGKH chr13:42803235 3'AG 42803235 Downstream 29bp 11344 chr11 1477649 1477649 1 + A G rs202041290 1477650 + 1477630 1477670 41 ACAAGGCCACGGGGGGGCCAGCCGTGTTCCAGAAGCCGGTC ACAAGGCCACGGGGGGGCCGGCCGTGTTCCAGAAGCCGGTC < 41bp 0.76472975246536 0.562991557903781 NA NA prediction 0.403476389123159 Functional Loss - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1477650 chr11:1477649 synonymous SNV . 0 20 hm7G_associated_SNPs_11975 0 0 0 0 1 BRSK2 chr11:1477578 3'AG 1477578 Downstream 72bp 11345 chr8 98041658 98041658 1 + T C LIHC 98041659 + 98041639 98041679 41 CCAAAGAGGACTCTGCGGCTGGTGCTCTGGACTGCAGAAGA CCAAAGAGGACTCTGCGGCCGGTGCTCTGGACTGCAGAAGA < 41bp 0.717374108055915 0.515638419035963 NA NA prediction 0.403471378039905 Functional Loss - CPQ ENSG00000104324 CDS Human protein_coding chr8:98041659 chr8:98041658 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_11976 0 0 1 0 2 CPQ chr8:98041631 3'AG 98041631 Downstream 28bp 11346 chr8 98041658 98041658 1 + T C LIHC 98041659 + 98041639 98041679 41 CCAAAGAGGACTCTGCGGCTGGTGCTCTGGACTGCAGAAGA CCAAAGAGGACTCTGCGGCCGGTGCTCTGGACTGCAGAAGA < 41bp 0.717374108055915 0.515638419035963 NA NA prediction 0.403471378039905 Functional Loss - CPQ ENSG00000104324 CDS Human protein_coding chr8:98041659 chr8:98041658 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_11976 0 0 1 0 2 CPQ chr8:98041722 5'GT 98041722 Upstream 65bp 11347 chr4 57340327 57340327 1 + T C UCEC 57340328 + 57340308 57340348 41 AAACAAACCTTTCAGCAGTTGTTGCAGCTCAAAGCAATTGG AAACAAACCTTTCAGCAGTCGTTGCAGCTCAAAGCAATTGG < 41bp 0.701731888435954 0.494807004741176 NA NA prediction 0.403463776871908 Functional Loss - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340328 chr4:57340327 synonymous SNV . 0 20 hm7G_associated_SNPs_11977 0 0 1 0 1 SRP72 chr4:57340363 5'GT 57340363 Upstream 37bp 11348 chr1 99764705 99764705 1 + T G UCEC 99764706 + 99764686 99764726 41 AAACCAAACTATACCTCTCTGAATGTATCTTGCAAAGAAAA AAACCAAACTATACCTCTCGGAATGTATCTTGCAAAGAAAA < 41bp 0.701717373812415 0.376437062361522 NA NA prediction 0.403434747624829 Functional Loss - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99764706 chr1:99764705 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11980 0 0 0 0 1 PLPPR4 chr1:99764786 5'GT 99764786 Upstream 82bp 11349 chr13 25439118 25439118 1 + T G UCEC 25439119 + 25439099 25439139 41 ACTGTACTTCTGAACATACTGAGGAGATGTTGAAAGAAGTA ACTGTACTTCTGAACATACGGAGGAGATGTTGAAAGAAGTA < 41bp 0.701714307606129 0.400762232145346 NA NA prediction 0.403428615212259 Functional Loss - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25439119 chr13:25439118 synonymous SNV . 0 20 hm7G_associated_SNPs_11982 0 0 0 0 1 RNF17 chr13:25439136 5'GT 25439136 Upstream 19bp 11350 chr10 81373521 81373521 1 + A G rs1059057 81373522 + 81373502 81373542 41 TGCAGGGCTCCATAATGACAGTAGGAGAGAAGGTCTTCTCC TGCAGGGCTCCATAATGACGGTAGGAGAGAAGGTCTTCTCC < 41bp 0.701893929932198 0.500190627309313 NA NA prediction 0.403406605245769 Functional Loss - SFTPA1 ENSG00000122852 CDS Human protein_coding chr10:81373522 chr10:81373521 synonymous SNV . 0 20 hm7G_associated_SNPs_11983 1 0 0 0 1 SFTPA1 chr10:81373493 3'AG 81373493 Downstream 29bp 11351 chr8 144295801 144295801 1 + A G UCEC 144295802 + 144295782 144295822 41 GGAAGAGGAGGAGACCAACAGGCTCCCTGGTGGCAGGAGCA GGAAGAGGAGGAGACCAACGGGCTCCCTGGTGGCAGGAGCA < 41bp 0.796915098959902 0.595222444686005 NA NA prediction 0.403385308547793 Functional Loss - GPIHBP1 ENSG00000182851 CDS Human other chr8:144295802 chr8:144295801 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_11984 0 0 0 0 1 GPIHBP1 chr8:144295825 5'GT 144295825 Upstream 25bp 11352 chr17 48434050 48434050 1 + T C UCEC 48434051 + 48434031 48434071 41 AGTGGGCTCAGTGATGTCATGCTCACTGCTTACACAGCCTT AGTGGGCTCAGTGATGTCACGCTCACTGCTTACACAGCCTT < 41bp 0.732578918972044 0.530886849562455 NA NA prediction 0.403384138819178 Functional Loss - XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48434051 chr17:48434050 nonsynonymous SNV 0.931 0 20 hm7G_associated_SNPs_11986 0 0 0 2 1 XYLT2 chr17:48434134 5'GT 48434134 Upstream 85bp 11353 chr11 44148425 44148425 1 + T C rs61733300 44148426 + 44148406 44148446 41 GCCAGGCAGTATTGAGCGATGTGTTACAAGCTGGCTGTGTC GCCAGGCAGTATTGAGCGACGTGTTACAAGCTGGCTGTGTC < 41bp 0.731250538635395 0.529559622146821 NA NA prediction 0.403381832977147 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148426 chr11:44148425 synonymous SNV . 0 20 hm7G_associated_SNPs_11987 1 0 1 0 2 EXT2 chr11:44148366 3'AG 44148366 Downstream 60bp 11354 chr11 44148425 44148425 1 + T C rs61733300 44148426 + 44148406 44148446 41 GCCAGGCAGTATTGAGCGATGTGTTACAAGCTGGCTGTGTC GCCAGGCAGTATTGAGCGACGTGTTACAAGCTGGCTGTGTC < 41bp 0.731250538635395 0.529559622146821 NA NA prediction 0.403381832977147 Functional Loss - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148426 chr11:44148425 synonymous SNV . 0 20 hm7G_associated_SNPs_11987 1 0 1 0 2 EXT2 chr11:44148505 5'GT 44148505 Upstream 81bp 11355 chr16 29917248 29917248 1 + T G rs140881798 29917249 + 29917229 29917269 41 TCCCTTCACACACCCAGGCTGGAGAGACACTGCGCTCAGGG TCCCTTCACACACCCAGGCGGGAGAGACACTGCGCTCAGGG < 41bp 0.701674578462582 0.373456562749232 NA NA prediction 0.403349156925163 Functional Loss - ASPHD1 ENSG00000174939 UTR3 Human protein_coding chr16:29917249 chr16:29917248 . . 0 20 hm7G_associated_SNPs_11989 0 0 1 1 1 ASPHD1 chr16:29917280 5'GT 29917280 Upstream 33bp 11356 chr12 120995094 120995094 1 + A G HNSC 120995095 + 120995075 120995115 41 TTTGTTTCAGCGCATTTGTAGCCATGAAGTGCCATCTTGCC TTTGTTTCAGCGCATTTGTGGCCATGAAGTGCCATCTTGCC < 41bp 0.701672307615858 0.493406756603723 NA NA prediction 0.403344615231716 Functional Loss - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120995095 chr12:120995094 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_11990 0 0 1 1 1 RNF10 chr12:120995085 3'AG 120995085 Downstream 10bp 11357 chr14 102802079 102802079 1 + T C UCEC 102802080 + 102802060 102802100 41 CAGCTATATATAAGGAATTTGAAGAGTTGCATAAAATGGTT CAGCTATATATAAGGAATTCGAAGAGTTGCATAAAATGGTT < 41bp 0.723704964482212 0.522044654290276 NA NA prediction 0.40332062038387 Functional Loss - ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102802080 chr14:102802079 synonymous SNV . 0 20 hm7G_associated_SNPs_11993 0 0 0 1 2 ZNF839 chr14:102802026 3'AG 102802026 Downstream 54bp 11358 chr14 102802079 102802079 1 + T C UCEC 102802080 + 102802060 102802100 41 CAGCTATATATAAGGAATTTGAAGAGTTGCATAAAATGGTT CAGCTATATATAAGGAATTCGAAGAGTTGCATAAAATGGTT < 41bp 0.723704964482212 0.522044654290276 NA NA prediction 0.40332062038387 Functional Loss - ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102802080 chr14:102802079 synonymous SNV . 0 20 hm7G_associated_SNPs_11993 0 0 0 1 2 ZNF839 chr14:102802175 5'GT 102802175 Upstream 97bp 11359 chr17 46058852 46058852 1 + T C SKCM 46058853 + 46058833 46058873 41 GGGCGCCCTGTGAACCTGATGGGAACCTCTCTGTGACACCC GGGCGCCCTGTGAACCTGACGGGAACCTCTCTGTGACACCC < 41bp 0.701659272162847 0.491254920124944 NA NA prediction 0.403318544325693 Functional Loss - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46058853 chr17:46058852 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_11994 0 0 0 0 1 CDK5RAP3 chr17:46058803 3'AG 46058803 Downstream 50bp 11360 chr11 119024815 119024815 1 + T C COAD 119024816 + 119024796 119024836 41 TCATGGGCCCCTCAGGGGCTGGCAAGTCTACATTCATGAAC TCATGGGCCCCTCAGGGGCCGGCAAGTCTACATTCATGAAC < 41bp 0.70165417166705 0.483931314309216 NA NA prediction 0.4033083433341 Functional Loss - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119024816 chr11:119024815 synonymous SNV . 0 20 hm7G_associated_SNPs_11996 0 0 0 0 1 ABCG4 chr11:119024736 3'AG 119024736 Downstream 80bp 11361 chr12 64818467 64818467 1 + T C BRCA 64818468 + 64818448 64818488 41 GTTTCACCAGAGTTACTACTGGCCTCTGTTCGCAGAGTTTT GTTTCACCAGAGTTACTACCGGCCTCTGTTCGCAGAGTTTT < 41bp 0.750476002649261 0.548826521294844 NA NA prediction 0.403298962708833 Functional Loss - XPOT ENSG00000184575 CDS Human protein_coding chr12:64818468 chr12:64818467 nonsynonymous SNV 0.661 4 20 hm7G_associated_SNPs_11998 0 0 1 0 1 XPOT chr12:64818503 5'GT 64818503 Upstream 37bp 11362 chrX 57473418 57473418 1 + T C LIHC 57473419 + 57473399 57473439 41 GAAACATGTCAGTCCTCTGTGGGAGTTGATCAAATGGTGCC GAAACATGTCAGTCCTCTGCGGGAGTTGATCAAATGGTGCC < 41bp 0.746759094410227 0.545114446772281 NA NA prediction 0.403289295275892 Functional Loss - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57473419 chrX:57473418 nonsynonymous SNV 0.125 0 20 hm7G_associated_SNPs_11999 0 0 0 0 2 FAAH2 chrX:57473361 3'AG 57473361 Downstream 58bp 11363 chrX 57473418 57473418 1 + T C LIHC 57473419 + 57473399 57473439 41 GAAACATGTCAGTCCTCTGTGGGAGTTGATCAAATGGTGCC GAAACATGTCAGTCCTCTGCGGGAGTTGATCAAATGGTGCC < 41bp 0.746759094410227 0.545114446772281 NA NA prediction 0.403289295275892 Functional Loss - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57473419 chrX:57473418 nonsynonymous SNV 0.125 0 20 hm7G_associated_SNPs_11999 0 0 0 0 2 FAAH2 chrX:57473472 5'GT 57473472 Upstream 55bp 11364 chr9 99698832 99698832 1 + T C rs374744182 99698833 + 99698813 99698853 41 GGACCCCCTGCCCCTGAGGTGGTCAAGCAGCCAGGTACAGC GGACCCCCTGCCCCTGAGGCGGTCAAGCAGCCAGGTACAGC < 41bp 0.71099146036598 0.509350538642371 NA NA prediction 0.403281843447219 Functional Loss - NUTM2G ENSG00000188152 CDS Human protein_coding chr9:99698833 chr9:99698832 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_12000 0 0 0 0 1 NUTM2G chr9:99698846 5'GT 99698846 Upstream 15bp 11365 chr5 161520912 161520912 1 + T C UCEC 161520913 + 161520893 161520933 41 TCTTGACTCCAAAAGTTCCTGAGGGTGATGTCACTGTCATC TCTTGACTCCAAAAGTTCCCGAGGGTGATGTCACTGTCATC < 41bp 0.723538969327006 0.521902568251595 NA NA prediction 0.403272802150823 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161520913 chr5:161520912 synonymous SNV . 0 20 hm7G_associated_SNPs_12001 0 0 0 0 2 GABRG2 chr5:161520834 3'AG 161520834 Downstream 79bp 11366 chr5 161520912 161520912 1 + T C UCEC 161520913 + 161520893 161520933 41 TCTTGACTCCAAAAGTTCCTGAGGGTGATGTCACTGTCATC TCTTGACTCCAAAAGTTCCCGAGGGTGATGTCACTGTCATC < 41bp 0.723538969327006 0.521902568251595 NA NA prediction 0.403272802150823 Functional Loss - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161520913 chr5:161520912 synonymous SNV . 0 20 hm7G_associated_SNPs_12001 0 0 0 0 2 GABRG2 chr5:161520985 5'GT 161520985 Upstream 74bp 11367 chr1 159785425 159785425 1 + A G rs4443889 159785426 + 159785406 159785446 41 GACTCTCCAAGAACCCCTTAGCGACTGTGAGGAGGTTCTCT GACTCTCCAAGAACCCCTTGGCGACTGTGAGGAGGTTCTCT < 41bp 0.701631014216279 0.483164806735574 NA NA prediction 0.403262028432558 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159785426 chr1:159785425 nonsynonymous SNV 0.010 0 20 hm7G_associated_SNPs_12002 0 0 0 2 2 FCRL6 chr1:159785326 3'AG 159785326 Downstream 100bp 11368 chr1 159785425 159785425 1 + A G rs4443889 159785426 + 159785406 159785446 41 GACTCTCCAAGAACCCCTTAGCGACTGTGAGGAGGTTCTCT GACTCTCCAAGAACCCCTTGGCGACTGTGAGGAGGTTCTCT < 41bp 0.701631014216279 0.483164806735574 NA NA prediction 0.403262028432558 Functional Loss - FCRL6 ENSG00000181036 CDS Human protein_coding chr1:159785426 chr1:159785425 nonsynonymous SNV 0.010 0 20 hm7G_associated_SNPs_12002 0 0 0 2 2 FCRL6 chr1:159785331 3'AG 159785331 Downstream 95bp 11369 chr12 50847454 50847454 1 + T C KIRP 50847455 + 50847435 50847475 41 CCTTACTTTGAAACACCACTGGTAAGTGAGATCCTTACAAT CCTTACTTTGAAACACCACCGGTAAGTGAGATCCTTACAAT < 41bp 0.709199183055989 0.507572024924265 NA NA prediction 0.403254316263447 Functional Loss - LARP4 ENSG00000161813 CDS Human protein_coding chr12:50847455 chr12:50847454 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12003 0 0 1 0 1 LARP4 chr12:50847455 5'GT 50847455 Upstream 2bp 11370 chr17 48614082 48614082 1 + A G rs146691139 48614083 + 48614063 48614103 41 ACACAGTGGCCTTCACCGAAGTCATGGGCATGCTGTGGCGG ACACAGTGGCCTTCACCGAGGTCATGGGCATGCTGTGGCGG < 41bp 0.701624698411179 0.477790236814807 NA NA prediction 0.403249396822358 Functional Loss - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48614083 chr17:48614082 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_12004 0 0 0 0 1 EPN3 chr17:48614069 3'AG 48614069 Downstream 14bp 11371 chr12 100797850 100797850 1 + T C LUAD 100797851 + 100797831 100797871 41 GCAGTCCCACACATGGTTATGACAATCGTTGTACCTATTGG GCAGTCCCACACATGGTTACGACAATCGTTGTACCTATTGG < 41bp 0.732036739608249 0.530413960214142 NA NA prediction 0.403245558788215 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100797851 chr12:100797850 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12005 0 0 0 0 2 SLC17A8 chr12:100797816 3'AG 100797816 Downstream 35bp 11372 chr12 100797850 100797850 1 + T C LUAD 100797851 + 100797831 100797871 41 GCAGTCCCACACATGGTTATGACAATCGTTGTACCTATTGG GCAGTCCCACACATGGTTACGACAATCGTTGTACCTATTGG < 41bp 0.732036739608249 0.530413960214142 NA NA prediction 0.403245558788215 Functional Loss - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100797851 chr12:100797850 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12005 0 0 0 0 2 SLC17A8 chr12:100797948 5'GT 100797948 Upstream 99bp 11373 chr8 69028132 69028132 1 + T C STAD 69028133 + 69028113 69028153 41 GAGATGAACAGGAAGATTCTGGTCATGACACCATCAGCAAC GAGATGAACAGGAAGATTCCGGTCATGACACCATCAGCAAC < 41bp 0.701612313540363 0.495126461839807 NA NA prediction 0.403224627080727 Functional Loss - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69028133 chr8:69028132 synonymous SNV . 0 20 hm7G_associated_SNPs_12006 0 0 0 0 1 PREX2 chr8:69028167 5'GT 69028167 Upstream 36bp 11374 chr9 70993117 70993117 1 + T C STAD 70993118 + 70993098 70993138 41 TTTTTTGGATGGTTTAGATTGGACGACTGATTATTGGACAG TTTTTTGGATGGTTTAGATCGGACGACTGATTATTGGACAG < 41bp 0.732801145883859 0.53119619812718 NA NA prediction 0.403209895513359 Functional Loss - PGM5 ENSG00000154330 CDS Human protein_coding chr9:70993118 chr9:70993117 synonymous SNV . 0 20 hm7G_associated_SNPs_12008 0 0 0 0 1 PGM5 chr9:70993115 3'AG 70993115 Downstream 3bp 11375 chr1 16247421 16247421 1 + T C UCEC 16247422 + 16247402 16247442 41 TCTACAATGAAATTGAATATGCACAAGCAGCTGTAAAAGAG TCTACAATGAAATTGAATACGCACAAGCAGCTGTAAAAGAG < 41bp 0.749176434197323 0.547576855317628 NA NA prediction 0.403199157759392 Functional Loss - SPEN ENSG00000065526 CDS Human protein_coding chr1:16247422 chr1:16247421 synonymous SNV . 0 20 hm7G_associated_SNPs_12010 0 0 1 0 2 SPEN chr1:16247365 3'AG 16247365 Downstream 57bp 11376 chr1 16247421 16247421 1 + T C UCEC 16247422 + 16247402 16247442 41 TCTACAATGAAATTGAATATGCACAAGCAGCTGTAAAAGAG TCTACAATGAAATTGAATACGCACAAGCAGCTGTAAAAGAG < 41bp 0.749176434197323 0.547576855317628 NA NA prediction 0.403199157759392 Functional Loss - SPEN ENSG00000065526 CDS Human protein_coding chr1:16247422 chr1:16247421 synonymous SNV . 0 20 hm7G_associated_SNPs_12010 0 0 1 0 2 SPEN chr1:16247478 5'GT 16247478 Upstream 58bp 11377 chr7 91980269 91980269 1 + T C LIHC 91980270 + 91980250 91980290 41 ATCCATTTTAATAGGTTTTTGAATCTGAAAATTCAAGAAGG ATCCATTTTAATAGGTTTTCGAATCTGAAAATTCAAGAAGG < 41bp 0.716454592559501 0.51485786433148 NA NA prediction 0.403193456456043 Functional Loss - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:91980270 chr7:91980269 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12011 0 0 0 0 1 ANKIB1 chr7:91980264 3'AG 91980264 Downstream 6bp 11378 chr3 100148706 100148706 1 + A G STAD 100148707 + 100148687 100148727 41 ACTGCAAGCCACCAGTCACAGGAAAACCTCCCTGCCCTGCC ACTGCAAGCCACCAGTCACGGGAAAACCTCCCTGCCCTGCC < 41bp 0.748239264019688 0.546651112738392 NA NA prediction 0.403176302562591 Functional Loss - LNP1 ENSG00000206535 CDS Human protein_coding chr3:100148707 chr3:100148706 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_12013 0 0 0 1 1 LNP1 chr3:100148729 5'GT 100148729 Upstream 24bp 11379 chr19 55420647 55420647 1 + A G BRCA 55420648 + 55420628 55420668 41 CGGTTCATCCTGGACCCGAAGTGATCTCGGGAGAGAAGGTG CGGTTCATCCTGGACCCGAGGTGATCTCGGGAGAGAAGGTG < 41bp 0.701585775462466 0.486021070667599 NA NA prediction 0.403171550924932 Functional Loss - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55420648 chr19:55420647 synonymous SNV . 0 20 hm7G_associated_SNPs_12015 0 0 0 0 1 NCR1 chr19:55420604 3'AG 55420604 Downstream 44bp 11380 chr17 7811324 7811324 1 + T C rs150988632 7811325 + 7811305 7811345 41 TCATGTTCAATATCGCCGATGGTGGCTTCACAGGTTGGGGA TCATGTTCAATATCGCCGACGGTGGCTTCACAGGTTGGGGA < 41bp 0.701584741401186 0.485069512478878 NA NA prediction 0.403169482802371 Functional Loss - CHD3 ENSG00000170004 CDS Human protein_coding chr17:7811325 chr17:7811324 synonymous SNV . 0 20 hm7G_associated_SNPs_12016 0 0 1 0 1 CHD3 chr17:7811337 5'GT 7811337 Upstream 14bp 11381 chr15 22929856 22929856 1 + T C PRAD 22929857 + 22929837 22929877 41 CTGGACGAGCTGAAGAACATGAAGTGCAGTGTGAAGAACGA CTGGACGAGCTGAAGAACACGAAGTGCAGTGTGAAGAACGA < 41bp 0.758506770132797 0.5569228585332 NA NA prediction 0.403167823199196 Functional Loss - CYFIP1 ENSG00000068793 CDS Human other chr15:22929857 chr15:22929856 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_12017 0 0 1 0 1 CYFIP1 chr15:22929895 5'GT 22929895 Upstream 40bp 11382 chr7 142563379 142563379 1 + T G UCEC 142563380 + 142563360 142563400 41 CGACCCACCAGAGGCCCCCTGCACTGGTGAGTTCCTCACCC CGACCCACCAGAGGCCCCCGGCACTGGTGAGTTCCTCACCC < 41bp 0.701582311896961 0.348653023182142 NA NA prediction 0.403164623793921 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142563380 chr7:142563379 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_12018 0 0 0 0 1 EPHB6 chr7:142563385 5'GT 142563385 Upstream 7bp 11383 chr6 71571596 71571596 1 - A G rs112217103 71571595 - 71571575 71571615 41 AGCCAGGGATGCAAGAATCTGACTTTCTCAAACAGATAACA AGCCAGGGATGCAAGAATCCGACTTTCTCAAACAGATAACA < 41bp 0.701575906691057 0.490647349365834 NA NA prediction 0.403151813382114 Functional Loss - B3GAT2 ENSG00000112309 CDS Human protein_coding chr6:71571595 chr6:71571596 synonymous SNV . 0 20 hm7G_associated_SNPs_12019 0 0 0 0 2 B3GAT2 chr6:71571533 5'GT 71571533 Upstream 64bp 11384 chr6 71571596 71571596 1 - A G rs112217103 71571595 - 71571575 71571615 41 AGCCAGGGATGCAAGAATCTGACTTTCTCAAACAGATAACA AGCCAGGGATGCAAGAATCCGACTTTCTCAAACAGATAACA < 41bp 0.701575906691057 0.490647349365834 NA NA prediction 0.403151813382114 Functional Loss - B3GAT2 ENSG00000112309 CDS Human protein_coding chr6:71571595 chr6:71571596 synonymous SNV . 0 20 hm7G_associated_SNPs_12019 0 0 0 0 2 B3GAT2 chr6:71571681 3'AG 71571681 Downstream 86bp 11385 chr18 59195394 59195394 1 + T C LAML 59195395 + 59195375 59195415 41 TGCCTGAGGATGTGGCGATTGGAACAACCATACAGATCATT TGCCTGAGGATGTGGCGATCGGAACAACCATACAGATCATT < 41bp 0.753917604786643 0.552342402782079 NA NA prediction 0.403150404009129 Functional Loss - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59195395 chr18:59195394 synonymous SNV . 0 20 hm7G_associated_SNPs_12020 0 0 0 0 1 CDH20 chr18:59195453 5'GT 59195453 Upstream 60bp 11386 chr22 29706632 29706632 1 + T C UCEC 29706633 + 29706613 29706653 41 TGCCCACACCTGCAGGTGCTGAGGAGCCACGTGATGGTGCG TGCCCACACCTGCAGGTGCCGAGGAGCCACGTGATGGTGCG < 41bp 0.719787153690849 0.518217744868891 NA NA prediction 0.403138817643917 Functional Loss - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706633 chr22:29706632 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_12021 0 0 0 0 2 GAS2L1 chr22:29706628 3'AG 29706628 Downstream 5bp 11387 chr22 29706632 29706632 1 + T C UCEC 29706633 + 29706613 29706653 41 TGCCCACACCTGCAGGTGCTGAGGAGCCACGTGATGGTGCG TGCCCACACCTGCAGGTGCCGAGGAGCCACGTGATGGTGCG < 41bp 0.719787153690849 0.518217744868891 NA NA prediction 0.403138817643917 Functional Loss - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706633 chr22:29706632 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_12021 0 0 0 0 2 GAS2L1 chr22:29706724 5'GT 29706724 Upstream 93bp 11388 chrX 16168494 16168494 1 + A G LUSC 16168495 + 16168475 16168515 41 TGATGAAGATCTGCCTCAAAGCCGCCTTTATCTGGATCATC TGATGAAGATCTGCCTCAAGGCCGCCTTTATCTGGATCATC < 41bp 0.701558960576844 0.488331049300866 NA NA prediction 0.403117921153687 Functional Loss - GRPR ENSG00000126010 CDS Human protein_coding chrX:16168495 chrX:16168494 synonymous SNV . 0 20 hm7G_associated_SNPs_12022 0 0 0 0 1 GRPR chrX:16168428 3'AG 16168428 Downstream 67bp 11389 chr17 6902760 6902760 1 + A G rs1126667 6902761 + 6902741 6902781 41 TCGGGGATGGAAGAGCTTCAGGCTCAACTGGAGAAAGAACT TCGGGGATGGAAGAGCTTCGGGCTCAACTGGAGAAAGAACT < 41bp 0.754866027493535 0.553319211079286 NA NA prediction 0.403093632828498 Functional Loss - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6902761 chr17:6902760 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_12025 0 0 0 0 1 ALOX12 chr17:6902785 5'GT 6902785 Upstream 26bp 11390 chr8 22146060 22146060 1 + T C rs140946106 22146061 + 22146041 22146081 41 TATTTATTTGTTAGGTTCTTGAGTTAAAAAGTCAAAGGAAA TATTTATTTGTTAGGTTCTCGAGTTAAAAAGTCAAAGGAAA < 41bp 0.725861029998476 0.524315611322446 NA NA prediction 0.40309083735206 Functional Loss - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22146061 chr8:22146060 synonymous SNV . 0 20 hm7G_associated_SNPs_12026 0 0 0 0 1 PIWIL2 chr8:22146055 3'AG 22146055 Downstream 6bp 11391 chr1 18809705 18809705 1 + A G STAD 18809706 + 18809686 18809726 41 AGCAGACTCTGTCTCACCCAGGTTTGTGCCCAAGGAGCTGC AGCAGACTCTGTCTCACCCGGGTTTGTGCCCAAGGAGCTGC < 41bp 0.779817750635656 0.578275855950709 NA NA prediction 0.403083789369894 Functional Loss - KLHDC7A ENSG00000179023 CDS Human protein_coding chr1:18809706 chr1:18809705 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_12027 0 0 0 0 1 KLHDC7A chr1:18809706 5'GT 18809706 Upstream 2bp 11392 chr4 84502958 84502958 1 + T C UCEC 84502959 + 84502939 84502979 41 TGGGTGCTGGGCGTCATAGTGCGCTATTGTGTCCTACTGCC TGGGTGCTGGGCGTCATAGCGCGCTATTGTGTCCTACTGCC < 41bp 0.701540374441671 0.487132504348874 NA NA prediction 0.403080748883342 Functional Loss - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84502959 chr4:84502958 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_12028 0 0 0 0 1 GPAT3 chr4:84502985 5'GT 84502985 Upstream 28bp 11393 chr5 156898690 156898690 1 + A G rs6860507 156898691 + 156898671 156898711 41 CCTCTCCTCATATTTCCTGAGGGAGAGTCTGAACCTGCTGG CCTCTCCTCATATTTCCTGGGGGAGAGTCTGAACCTGCTGG < 41bp 0.745002894335929 0.543463993694625 NA NA prediction 0.403077801282608 Functional Loss - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156898691 chr5:156898690 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_12029 2 0 0 0 1 NIPAL4 chr5:156898665 3'AG 156898665 Downstream 26bp 11394 chr19 1080282 1080282 1 + A G STAD 1080283 + 1080263 1080303 41 CATGCGTGCCCGGAAGAGCAGCTTCAACGTGAGTGATGTGG CATGCGTGCCCGGAAGAGCGGCTTCAACGTGAGTGATGTGG < 41bp 0.7907034206414 0.589165299134358 NA NA prediction 0.403076243014083 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080283 chr19:1080282 nonsynonymous SNV 0.972 2 20 hm7G_associated_SNPs_12030 0 0 1 0 2 ARHGAP45 chr19:1080254 3'AG 1080254 Downstream 29bp 11395 chr19 1080282 1080282 1 + A G STAD 1080283 + 1080263 1080303 41 CATGCGTGCCCGGAAGAGCAGCTTCAACGTGAGTGATGTGG CATGCGTGCCCGGAAGAGCGGCTTCAACGTGAGTGATGTGG < 41bp 0.7907034206414 0.589165299134358 NA NA prediction 0.403076243014083 Functional Loss - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080283 chr19:1080282 nonsynonymous SNV 0.972 2 20 hm7G_associated_SNPs_12030 0 0 1 0 2 ARHGAP45 chr19:1080378 5'GT 1080378 Upstream 97bp 11396 chr15 75182953 75182953 1 + T C UCEC 75182954 + 75182934 75182974 41 CGCGGCTGTTGGCCAGCAGTGATCCACTGGCCCAGATCGCA CGCGGCTGTTGGCCAGCAGCGATCCACTGGCCCAGATCGCA < 41bp 0.727682301554686 0.526144551615984 NA NA prediction 0.403075499877404 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75182954 chr15:75182953 stoploss . 0 20 hm7G_associated_SNPs_12031 0 0 1 0 2 MPI chr15:75182868 3'AG 75182868 Downstream 86bp 11397 chr15 75182953 75182953 1 + T C UCEC 75182954 + 75182934 75182974 41 CGCGGCTGTTGGCCAGCAGTGATCCACTGGCCCAGATCGCA CGCGGCTGTTGGCCAGCAGCGATCCACTGGCCCAGATCGCA < 41bp 0.727682301554686 0.526144551615984 NA NA prediction 0.403075499877404 Functional Loss - MPI ENSG00000178802 CDS Human protein_coding chr15:75182954 chr15:75182953 stoploss . 0 20 hm7G_associated_SNPs_12031 0 0 1 0 2 MPI chr15:75182995 5'GT 75182995 Upstream 43bp 11398 chr9 97213764 97213764 1 + T C COAD 97213765 + 97213745 97213785 41 GTTTTGGATCTGTTAAAATTGCAGCATTCATAGCTATGGTA GTTTTGGATCTGTTAAAATCGCAGCATTCATAGCTATGGTA < 41bp 0.760554005384347 0.55903333370295 NA NA prediction 0.403041343362792 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97213765 chr9:97213764 synonymous SNV . 0 20 hm7G_associated_SNPs_12032 0 0 1 0 2 MFSD14B chr9:97213738 3'AG 97213738 Downstream 27bp 11399 chr9 97213764 97213764 1 + T C COAD 97213765 + 97213745 97213785 41 GTTTTGGATCTGTTAAAATTGCAGCATTCATAGCTATGGTA GTTTTGGATCTGTTAAAATCGCAGCATTCATAGCTATGGTA < 41bp 0.760554005384347 0.55903333370295 NA NA prediction 0.403041343362792 Functional Loss - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97213765 chr9:97213764 synonymous SNV . 0 20 hm7G_associated_SNPs_12032 0 0 1 0 2 MFSD14B chr9:97213809 5'GT 97213809 Upstream 46bp 11400 chr10 103296348 103296348 1 + T C UCEC 103296349 + 103296329 103296369 41 TACGAGTGTTAGAAGGCCATGAGGAATTGGTGCGTTGTATT TACGAGTGTTAGAAGGCCACGAGGAATTGGTGCGTTGTATT < 41bp 0.744543840941765 0.543024970028818 NA NA prediction 0.403037741825894 Functional Loss - BTRC ENSG00000166167 CDS Human protein_coding chr10:103296349 chr10:103296348 synonymous SNV . 0 20 hm7G_associated_SNPs_12033 0 0 1 0 2 BTRC chr10:103296300 3'AG 103296300 Downstream 49bp 11401 chr10 103296348 103296348 1 + T C UCEC 103296349 + 103296329 103296369 41 TACGAGTGTTAGAAGGCCATGAGGAATTGGTGCGTTGTATT TACGAGTGTTAGAAGGCCACGAGGAATTGGTGCGTTGTATT < 41bp 0.744543840941765 0.543024970028818 NA NA prediction 0.403037741825894 Functional Loss - BTRC ENSG00000166167 CDS Human protein_coding chr10:103296349 chr10:103296348 synonymous SNV . 0 20 hm7G_associated_SNPs_12033 0 0 1 0 2 BTRC chr10:103296410 5'GT 103296410 Upstream 63bp 11402 chr19 10662585 10662585 1 + T C LUSC 10662586 + 10662566 10662606 41 CCTGCAGGAACTCCTGCGTTGCGAGCTGTGCCTGGGCATCA CCTGCAGGAACTCCTGCGTCGCGAGCTGTGCCTGGGCATCA < 41bp 0.74250864912072 0.540994364534168 NA NA prediction 0.403028569173105 Functional Loss - ATG4D ENSG00000130734 CDS Human protein_coding chr19:10662586 chr19:10662585 nonsynonymous SNV 0.410 1 20 hm7G_associated_SNPs_12034 0 0 1 0 2 ATG4D chr19:10662573 3'AG 10662573 Downstream 13bp 11403 chr19 10662585 10662585 1 + T C LUSC 10662586 + 10662566 10662606 41 CCTGCAGGAACTCCTGCGTTGCGAGCTGTGCCTGGGCATCA CCTGCAGGAACTCCTGCGTCGCGAGCTGTGCCTGGGCATCA < 41bp 0.74250864912072 0.540994364534168 NA NA prediction 0.403028569173105 Functional Loss - ATG4D ENSG00000130734 CDS Human protein_coding chr19:10662586 chr19:10662585 nonsynonymous SNV 0.410 1 20 hm7G_associated_SNPs_12034 0 0 1 0 2 ATG4D chr19:10662651 5'GT 10662651 Upstream 67bp 11404 chrX 135474491 135474491 1 + T C UCEC 135474492 + 135474472 135474512 41 GACCCAGTGGTTATCACTCTGCAGCATATTGGAGGAAACCA GACCCAGTGGTTATCACTCCGCAGCATATTGGAGGAAACCA < 41bp 0.725457885386009 0.523954284402104 NA NA prediction 0.40300720196781 Functional Loss - ADGRG4 ENSG00000156920 CDS Human protein_coding chrX:135474492 chrX:135474491 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12035 0 0 0 0 1 ADGRG4 chrX:135474513 5'GT 135474513 Upstream 23bp 11405 chr11 120340073 120340073 1 + T C LIHC 120340074 + 120340054 120340094 41 TAAATTATGTAAATCAGGCTGTCAAGGAGGCAGAAAACAAG TAAATTATGTAAATCAGGCCGTCAAGGAGGCAGAAAACAAG < 41bp 0.711182853587977 0.50968169566739 NA NA prediction 0.403002315841174 Functional Loss - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120340074 chr11:120340073 synonymous SNV . 0 20 hm7G_associated_SNPs_12039 0 0 1 0 2 ARHGEF12 chr11:120339997 3'AG 120339997 Downstream 77bp 11406 chr11 120340073 120340073 1 + T C LIHC 120340074 + 120340054 120340094 41 TAAATTATGTAAATCAGGCTGTCAAGGAGGCAGAAAACAAG TAAATTATGTAAATCAGGCCGTCAAGGAGGCAGAAAACAAG < 41bp 0.711182853587977 0.50968169566739 NA NA prediction 0.403002315841174 Functional Loss - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120340074 chr11:120340073 synonymous SNV . 0 20 hm7G_associated_SNPs_12039 0 0 1 0 2 ARHGEF12 chr11:120340097 5'GT 120340097 Upstream 25bp 11407 chrX 47444985 47444985 1 + T C rs4898 47444986 + 47444966 47445006 41 ACATCACTACCTGCAGTTTTGTGGCTCCCTGGAACAGCCTG ACATCACTACCTGCAGTTTCGTGGCTCCCTGGAACAGCCTG < 41bp 0.704357673168321 0.502858412628463 NA NA prediction 0.402998521079716 Functional Loss - TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47444986 chrX:47444985 synonymous SNV . 0 20 hm7G_associated_SNPs_12040 0 0 1 0 2 TIMP1 chrX:47444942 3'AG 47444942 Downstream 44bp 11408 chrX 47444985 47444985 1 + T C rs4898 47444986 + 47444966 47445006 41 ACATCACTACCTGCAGTTTTGTGGCTCCCTGGAACAGCCTG ACATCACTACCTGCAGTTTCGTGGCTCCCTGGAACAGCCTG < 41bp 0.704357673168321 0.502858412628463 NA NA prediction 0.402998521079716 Functional Loss - TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47444986 chrX:47444985 synonymous SNV . 0 20 hm7G_associated_SNPs_12040 0 0 1 0 2 TIMP1 chrX:47445066 5'GT 47445066 Upstream 82bp 11409 chr7 98957173 98957173 1 + T C COAD 98957174 + 98957154 98957194 41 GAGTCTTGTTTCAGGGCCATGACTGCTGCCCAATGCTCTTT GAGTCTTGTTTCAGGGCCACGACTGCTGCCCAATGCTCTTT < 41bp 0.701490310772969 0.494191432191947 NA NA prediction 0.402980621545938 Functional Loss - ARPC1A ENSG00000241685 CDS Human protein_coding chr7:98957174 chr7:98957173 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_12041 0 0 1 1 1 ARPC1A chr7:98957168 3'AG 98957168 Downstream 6bp 11410 chr19 35804240 35804240 1 + T G LUSC 35804241 + 35804221 35804261 41 GGCTGCTGGGCCTTCGGGGTGAGCCCCCAGAGCTGGACCTG GGCTGCTGGGCCTTCGGGGGGAGCCCCCAGAGCTGGACCTG < 41bp 0.91120788373128 0.709734083184949 NA NA prediction 0.402947601092661 Functional Loss - MAG ENSG00000105695 CDS Human protein_coding chr19:35804241 chr19:35804240 synonymous SNV . 0 20 hm7G_associated_SNPs_12045 0 0 0 0 2 MAG chr19:35804193 3'AG 35804193 Downstream 48bp 11411 chr19 35804240 35804240 1 + T G LUSC 35804241 + 35804221 35804261 41 GGCTGCTGGGCCTTCGGGGTGAGCCCCCAGAGCTGGACCTG GGCTGCTGGGCCTTCGGGGGGAGCCCCCAGAGCTGGACCTG < 41bp 0.91120788373128 0.709734083184949 NA NA prediction 0.402947601092661 Functional Loss - MAG ENSG00000105695 CDS Human protein_coding chr19:35804241 chr19:35804240 synonymous SNV . 0 20 hm7G_associated_SNPs_12045 0 0 0 0 2 MAG chr19:35804332 5'GT 35804332 Upstream 93bp 11412 chr15 39881161 39881161 1 + T C COAD 39881162 + 39881142 39881182 41 TCTCTCTCCTTGTCTCAGATGGATGCCTGTCCAATCCCTGC TCTCTCTCCTTGTCTCAGACGGATGCCTGTCCAATCCCTGC < 41bp 0.749344870529906 0.547877668710916 NA NA prediction 0.40293440363798 Functional Loss - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39881162 chr15:39881161 synonymous SNV . 0 20 hm7G_associated_SNPs_12047 0 0 0 0 1 THBS1 chr15:39881160 3'AG 39881160 Downstream 2bp 11413 chr2 234905121 234905121 1 + T C COAD 234905122 + 234905102 234905142 41 GGTGAAGAAGTGCTTCAAGTGTTGCTGCAAGGAGAAAAACA GGTGAAGAAGTGCTTCAAGCGTTGCTGCAAGGAGAAAAACA < 41bp 0.71865895651333 0.51719725960354 NA NA prediction 0.40292339381958 Functional Loss - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234905122 chr2:234905121 nonsynonymous SNV 0.767 1 20 hm7G_associated_SNPs_12048 0 0 0 0 1 TRPM8 chr2:234905160 5'GT 234905160 Upstream 40bp 11414 chr2 152315418 152315418 1 + T C LUSC 152315419 + 152315399 152315439 41 AATCCAGTGGACCATATTCTGATGGAGTAAGTTGGGGGGTT AATCCAGTGGACCATATTCCGATGGAGTAAGTTGGGGGGTT < 41bp 0.70740773445645 0.505947227346806 NA NA prediction 0.402921014219288 Functional Loss - RIF1 ENSG00000080345 CDS Human protein_coding chr2:152315419 chr2:152315418 synonymous SNV . 0 20 hm7G_associated_SNPs_12050 0 0 1 0 2 RIF1 chr2:152315325 3'AG 152315325 Downstream 94bp 11415 chr2 152315418 152315418 1 + T C LUSC 152315419 + 152315399 152315439 41 AATCCAGTGGACCATATTCTGATGGAGTAAGTTGGGGGGTT AATCCAGTGGACCATATTCCGATGGAGTAAGTTGGGGGGTT < 41bp 0.70740773445645 0.505947227346806 NA NA prediction 0.402921014219288 Functional Loss - RIF1 ENSG00000080345 CDS Human protein_coding chr2:152315419 chr2:152315418 synonymous SNV . 0 20 hm7G_associated_SNPs_12050 0 0 1 0 2 RIF1 chr2:152315424 5'GT 152315424 Upstream 7bp 11416 chr19 33586691 33586691 1 + T C rs143606472 33586692 + 33586672 33586712 41 TGGAGTCAAAATCTATGGCTGTGCATTACCCCCTGGAAGCT TGGAGTCAAAATCTATGGCCGTGCATTACCCCCTGGAAGCT < 41bp 0.72280664345629 0.521350995640102 NA NA prediction 0.402911295632375 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33586692 chr19:33586691 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12051 0 0 1 0 2 GPATCH1 chr19:33586668 3'AG 33586668 Downstream 24bp 11417 chr19 33586691 33586691 1 + T C rs143606472 33586692 + 33586672 33586712 41 TGGAGTCAAAATCTATGGCTGTGCATTACCCCCTGGAAGCT TGGAGTCAAAATCTATGGCCGTGCATTACCCCCTGGAAGCT < 41bp 0.72280664345629 0.521350995640102 NA NA prediction 0.402911295632375 Functional Loss - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33586692 chr19:33586691 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12051 0 0 1 0 2 GPATCH1 chr19:33586726 5'GT 33586726 Upstream 36bp 11418 chr5 176304977 176304977 1 + A G COAD 176304978 + 176304958 176304998 41 GCCTGCTACGTCTTCACCGAGCAGCTGGGCCGCTTTGCCCT GCCTGCTACGTCTTCACCGGGCAGCTGGGCCGCTTTGCCCT < 41bp 0.795267897931289 0.593812566234852 NA NA prediction 0.402910663392875 Functional Loss - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304978 chr5:176304977 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_12052 0 0 0 0 1 UNC5A chr5:176304895 3'AG 176304895 Downstream 83bp 11419 chr1 109804212 109804212 1 + A G LIHC 109804213 + 109804193 109804233 41 CATGACTTTGTGGCCCTCGAGGTGATCCAGGAGCAGGTCCA CATGACTTTGTGGCCCTCGGGGTGATCCAGGAGCAGGTCCA < 41bp 0.717928728636568 0.516478296764188 NA NA prediction 0.40290086374476 Functional Loss - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804213 chr1:109804212 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12055 0 0 1 0 2 CELSR2 chr1:109804135 3'AG 109804135 Downstream 78bp 11420 chr1 109804212 109804212 1 + A G LIHC 109804213 + 109804193 109804233 41 CATGACTTTGTGGCCCTCGAGGTGATCCAGGAGCAGGTCCA CATGACTTTGTGGCCCTCGGGGTGATCCAGGAGCAGGTCCA < 41bp 0.717928728636568 0.516478296764188 NA NA prediction 0.40290086374476 Functional Loss - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109804213 chr1:109804212 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12055 0 0 1 0 2 CELSR2 chr1:109804250 5'GT 109804250 Upstream 39bp 11421 chr16 2282283 2282283 1 + A G ESCA 2282284 + 2282264 2282304 41 GGGCTGGGGCTCGCAGGGGAGGGTGAGCAGGCCCAGGTGAA GGGCTGGGGCTCGCAGGGGGGGGTGAGCAGGCCCAGGTGAA < 41bp 0.788170924112017 0.586720627274577 NA NA prediction 0.402900593674879 Functional Loss - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2282284 chr16:2282283 nonsynonymous SNV 0.850 0 20 hm7G_associated_SNPs_12056 0 0 1 0 1 E4F1 chr16:2282365 5'GT 2282365 Upstream 83bp 11422 chr5 148626059 148626059 1 + A G UCEC 148626060 + 148626040 148626080 41 GACAGTGCCCCGAGCCAGAAGGTTCTCGTCTGGAGGAGAGG GACAGTGCCCCGAGCCAGAGGGTTCTCGTCTGGAGGAGAGG < 41bp 0.783638448928354 0.582198680872466 NA NA prediction 0.402879536111777 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148626060 chr5:148626059 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12057 0 0 1 0 2 ABLIM3 chr5:148626045 3'AG 148626045 Downstream 15bp 11423 chr5 148626059 148626059 1 + A G UCEC 148626060 + 148626040 148626080 41 GACAGTGCCCCGAGCCAGAAGGTTCTCGTCTGGAGGAGAGG GACAGTGCCCCGAGCCAGAGGGTTCTCGTCTGGAGGAGAGG < 41bp 0.783638448928354 0.582198680872466 NA NA prediction 0.402879536111777 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148626060 chr5:148626059 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12057 0 0 1 0 2 ABLIM3 chr5:148626109 5'GT 148626109 Upstream 51bp 11424 chr6 41196764 41196764 1 + A G UCEC 41196765 + 41196745 41196785 41 CACTGTTCTTAGAAATATCAGCCTGGTGGTGTCTCCAGGTG CACTGTTCTTAGAAATATCGGCCTGGTGGTGTCTCCAGGTG < 41bp 0.701436815729796 0.496305816362364 NA NA prediction 0.402873631459592 Functional Loss - TREML4 ENSG00000188056 CDS Human protein_coding chr6:41196765 chr6:41196764 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_12059 0 0 0 0 1 TREML4 chr6:41196782 5'GT 41196782 Upstream 19bp 11425 chr6 146480578 146480578 1 + T C HNSC 146480579 + 146480559 146480599 41 ACAAAATCTACAGCAACGCTGGGGAGAAGAGCTTTGACCGA ACAAAATCTACAGCAACGCCGGGGAGAAGAGCTTTGACCGA < 41bp 0.708780515838504 0.507345701072754 NA NA prediction 0.402869629531501 Functional Loss - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146480579 chr6:146480578 synonymous SNV . 0 20 hm7G_associated_SNPs_12060 0 0 0 0 1 GRM1 chr6:146480484 3'AG 146480484 Downstream 95bp 11426 chr22 41566511 41566511 1 + T G STAD 41566512 + 41566492 41566532 41 ATACCCAAGCCCAAGCGACTGCAGGAATGGTACAAAAAAAT ATACCCAAGCCCAAGCGACGGCAGGAATGGTACAAAAAAAT < 41bp 0.701434330879946 0.356373279428785 NA NA prediction 0.402868661759891 Functional Loss - EP300 ENSG00000100393 CDS Human protein_coding chr22:41566512 chr22:41566511 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_12061 0 0 1 0 1 EP300 chr22:41566575 5'GT 41566575 Upstream 65bp 11427 chr1 154209584 154209584 1 + T C rs35699480 154209585 + 154209565 154209605 41 GCAATACGTGGAACAACACTGGCCACTTTGAACCAGATGAT GCAATACGTGGAACAACACCGGCCACTTTGAACCAGATGAT < 41bp 0.746409084621077 0.544981954695561 NA NA prediction 0.402854259851032 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154209585 chr1:154209584 synonymous SNV . 0 20 hm7G_associated_SNPs_12064 0 0 1 0 2 UBAP2L chr1:154209500 3'AG 154209500 Downstream 85bp 11428 chr1 154209584 154209584 1 + T C rs35699480 154209585 + 154209565 154209605 41 GCAATACGTGGAACAACACTGGCCACTTTGAACCAGATGAT GCAATACGTGGAACAACACCGGCCACTTTGAACCAGATGAT < 41bp 0.746409084621077 0.544981954695561 NA NA prediction 0.402854259851032 Functional Loss - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154209585 chr1:154209584 synonymous SNV . 0 20 hm7G_associated_SNPs_12064 0 0 1 0 2 UBAP2L chr1:154209612 5'GT 154209612 Upstream 29bp 11429 chr17 54939528 54939528 1 + T C rs2230873 54939529 + 54939509 54939549 41 ATGGTCTGCTGGAAGTCGTTGGAGTATATGGGTCTTTCCAC ATGGTCTGCTGGAAGTCGTCGGAGTATATGGGTCTTTCCAC < 41bp 0.747124884198851 0.545698206167796 NA NA prediction 0.402853356062109 Functional Loss - DGKE ENSG00000153933 CDS Human protein_coding chr17:54939529 chr17:54939528 synonymous SNV . 0 20 hm7G_associated_SNPs_12065 0 0 1 0 1 DGKE chr17:54939501 3'AG 54939501 Downstream 28bp 11430 chr7 142637502 142637502 1 + T G THCA 142637503 + 142637483 142637523 41 GTGGGTGAGATGTGGCAGGTGGTGGACATGGCCCAGCAGGA GTGGGTGAGATGTGGCAGGGGGTGGACATGGCCCAGCAGGA < 41bp 0.906542064707755 0.705116445678995 NA NA prediction 0.40285123805752 Functional Loss - C7orf34 ENSG00000165131 CDS Human protein_coding chr7:142637503 chr7:142637502 nonsynonymous SNV 0.843 1 20 hm7G_associated_SNPs_12066 0 0 0 0 1 C7orf34 chr7:142637439 3'AG 142637439 Downstream 64bp 11431 chr5 52344497 52344497 1 + T C UCEC 52344498 + 52344478 52344518 41 CCTTCCCTCATAGATGTTGTGGTTGTGTGTGATGAATCAAA CCTTCCCTCATAGATGTTGCGGTTGTGTGTGATGAATCAAA < 41bp 0.724142712259049 0.522721704118465 NA NA prediction 0.402842016281167 Functional Loss - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52344498 chr5:52344497 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_12068 0 0 1 0 1 ITGA2 chr5:52344473 3'AG 52344473 Downstream 25bp 11432 chr6 27220599 27220599 1 + A G UCEC 27220600 + 27220580 27220620 41 TCCCTAGATTGTCTTGCACAGCCTGGGCCAGAAGTGTTTAA TCCCTAGATTGTCTTGCACGGCCTGGGCCAGAAGTGTTTAA < 41bp 0.701410480943311 0.495183513361792 NA NA prediction 0.402820961886622 Functional Loss - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27220600 chr6:27220599 nonsynonymous SNV 0.855 2 20 hm7G_associated_SNPs_12069 0 0 0 0 1 PRSS16 chr6:27220587 3'AG 27220587 Downstream 13bp 11433 chr16 50342277 50342277 1 + T C UCEC 50342278 + 50342258 50342298 41 CCTTCGGGCTGGTGGCCTGTGTACTGGGGCTGGTGCTGGGC CCTTCGGGCTGGTGGCCTGCGTACTGGGGCTGGTGCTGGGC < 41bp 0.718241556185742 0.516832318079794 NA NA prediction 0.402818476211895 Functional Loss - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342278 chr16:50342277 synonymous SNV . 0 20 hm7G_associated_SNPs_12070 0 0 1 0 2 ADCY7 chr16:50342238 3'AG 50342238 Downstream 40bp 11434 chr16 50342277 50342277 1 + T C UCEC 50342278 + 50342258 50342298 41 CCTTCGGGCTGGTGGCCTGTGTACTGGGGCTGGTGCTGGGC CCTTCGGGCTGGTGGCCTGCGTACTGGGGCTGGTGCTGGGC < 41bp 0.718241556185742 0.516832318079794 NA NA prediction 0.402818476211895 Functional Loss - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50342278 chr16:50342277 synonymous SNV . 0 20 hm7G_associated_SNPs_12070 0 0 1 0 2 ADCY7 chr16:50342322 5'GT 50342322 Upstream 46bp 11435 chr16 22157594 22157594 1 + T C LUSC 22157595 + 22157575 22157615 41 CAGTGGACGCCCAGGGAGATGGAGGTGTACATCAGGCACTT CAGTGGACGCCCAGGGAGACGGAGGTGTACATCAGGCACTT < 41bp 0.748955119680445 0.54755185503408 NA NA prediction 0.402806529292729 Functional Loss - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22157595 chr16:22157594 nonsynonymous SNV 0.131 1 20 hm7G_associated_SNPs_12071 0 0 0 0 2 VWA3A chr16:22157557 3'AG 22157557 Downstream 38bp 11436 chr16 22157594 22157594 1 + T C LUSC 22157595 + 22157575 22157615 41 CAGTGGACGCCCAGGGAGATGGAGGTGTACATCAGGCACTT CAGTGGACGCCCAGGGAGACGGAGGTGTACATCAGGCACTT < 41bp 0.748955119680445 0.54755185503408 NA NA prediction 0.402806529292729 Functional Loss - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22157595 chr16:22157594 nonsynonymous SNV 0.131 1 20 hm7G_associated_SNPs_12071 0 0 0 0 2 VWA3A chr16:22157665 5'GT 22157665 Upstream 72bp 11437 chr1 230927667 230927667 1 + T C COAD 230927668 + 230927648 230927688 41 TGTAAAAACATCATTTCCCTGATGGACGTATCCTTCCAAAT TGTAAAAACATCATTTCCCCGATGGACGTATCCTTCCAAAT < 41bp 0.721119845359045 0.519731709861499 NA NA prediction 0.402776270995092 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230927668 chr1:230927667 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_12072 0 0 0 0 2 CAPN9 chr1:230927610 3'AG 230927610 Downstream 58bp 11438 chr1 230927667 230927667 1 + T C COAD 230927668 + 230927648 230927688 41 TGTAAAAACATCATTTCCCTGATGGACGTATCCTTCCAAAT TGTAAAAACATCATTTCCCCGATGGACGTATCCTTCCAAAT < 41bp 0.721119845359045 0.519731709861499 NA NA prediction 0.402776270995092 Functional Loss - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230927668 chr1:230927667 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_12072 0 0 0 0 2 CAPN9 chr1:230927674 5'GT 230927674 Upstream 8bp 11439 chr16 15785078 15785078 1 + A G LAML 15785079 + 15785059 15785099 41 CAGCTCAGTGGAAGCTGAGAGGACAGACACAGCTGTGCAGG CAGCTCAGTGGAAGCTGAGGGGACAGACACAGCTGTGCAGG < 41bp 0.759895319833302 0.558531054586029 NA NA prediction 0.402728530494546 Functional Loss - NDE1 ENSG00000072864 CDS Human protein_coding chr16:15785079 chr16:15785078 nonsynonymous SNV 0.508 1 20 hm7G_associated_SNPs_12076 0 0 1 0 1 NDE1 chr16:15785001 3'AG 15785001 Downstream 78bp 11440 chr20 61960947 61960947 1 + A G UCEC 61960948 + 61960928 61960968 41 TCCTCGCAGGGGAGCCTGGAGCTGTTGGTCAGATGGGCAGC TCCTCGCAGGGGAGCCTGGGGCTGTTGGTCAGATGGGCAGC < 41bp 0.77561023020403 0.574278801287722 NA NA prediction 0.402662857832616 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61960948 chr20:61960947 synonymous SNV . 0 20 hm7G_associated_SNPs_12080 0 0 0 0 2 COL20A1 chr20:61960937 3'AG 61960937 Downstream 11bp 11441 chr20 61960947 61960947 1 + A G UCEC 61960948 + 61960928 61960968 41 TCCTCGCAGGGGAGCCTGGAGCTGTTGGTCAGATGGGCAGC TCCTCGCAGGGGAGCCTGGGGCTGTTGGTCAGATGGGCAGC < 41bp 0.77561023020403 0.574278801287722 NA NA prediction 0.402662857832616 Functional Loss - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61960948 chr20:61960947 synonymous SNV . 0 20 hm7G_associated_SNPs_12080 0 0 0 0 2 COL20A1 chr20:61961013 5'GT 61961013 Upstream 67bp 11442 chr10 81050753 81050753 1 + T C UCEC 81050754 + 81050734 81050774 41 GCCAATGCCAACAACCCCATGAATCCAGGCGGCAACCCCAT GCCAATGCCAACAACCCCACGAATCCAGGCGGCAACCCCAT < 41bp 0.747120533218018 0.545790776885277 NA NA prediction 0.402659512665482 Functional Loss - ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:81050754 chr10:81050753 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12081 0 0 1 0 1 ZMIZ1 chr10:81050716 3'AG 81050716 Downstream 38bp 11443 chr3 52511636 52511636 1 + T C SKCM 52511637 + 52511617 52511657 41 GACCTGAGTCACAATGGATTGCTGGTTGTGGACAATCTGCA GACCTGAGTCACAATGGATCGCTGGTTGTGGACAATCTGCA < 41bp 0.762967954383519 0.561641195268016 NA NA prediction 0.402653518231006 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52511637 chr3:52511636 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_12083 0 0 1 0 2 NISCH chr3:52511590 3'AG 52511590 Downstream 47bp 11444 chr3 52511636 52511636 1 + T C SKCM 52511637 + 52511617 52511657 41 GACCTGAGTCACAATGGATTGCTGGTTGTGGACAATCTGCA GACCTGAGTCACAATGGATCGCTGGTTGTGGACAATCTGCA < 41bp 0.762967954383519 0.561641195268016 NA NA prediction 0.402653518231006 Functional Loss - NISCH ENSG00000010322 CDS Human protein_coding chr3:52511637 chr3:52511636 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_12083 0 0 1 0 2 NISCH chr3:52511658 5'GT 52511658 Upstream 23bp 11445 chr3 52538810 52538810 1 + T C UCEC 52538811 + 52538791 52538831 41 ATCGCAGGGCAGCACATCCTGGAGGACACAAGGACCCAACA ATCGCAGGGCAGCACATCCCGGAGGACACAAGGACCCAACA < 41bp 0.719765194545796 0.518439066561719 NA NA prediction 0.402652255968154 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538811 chr3:52538810 nonsynonymous SNV 0.358 4 20 hm7G_associated_SNPs_12084 0 0 0 0 2 STAB1 chr3:52538755 3'AG 52538755 Downstream 56bp 11446 chr3 52538810 52538810 1 + T C UCEC 52538811 + 52538791 52538831 41 ATCGCAGGGCAGCACATCCTGGAGGACACAAGGACCCAACA ATCGCAGGGCAGCACATCCCGGAGGACACAAGGACCCAACA < 41bp 0.719765194545796 0.518439066561719 NA NA prediction 0.402652255968154 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538811 chr3:52538810 nonsynonymous SNV 0.358 4 20 hm7G_associated_SNPs_12084 0 0 0 0 2 STAB1 chr3:52538892 5'GT 52538892 Upstream 83bp 11447 chr2 47703546 47703546 1 + T C OV 47703547 + 47703527 47703567 41 CAACATATATTCGACAAACTGGGGTGATAGTACTCATGGCC CAACATATATTCGACAAACCGGGGTGATAGTACTCATGGCC < 41bp 0.752524027166677 0.551199318878017 NA NA prediction 0.402649416577319 Functional Loss - MSH2 ENSG00000095002 CDS Human protein_coding chr2:47703547 chr2:47703546 synonymous SNV . 0 20 hm7G_associated_SNPs_12085 0 0 1 0 1 MSH2 chr2:47703506 3'AG 47703506 Downstream 41bp 11448 chr10 102747318 102747318 1 + A G rs187213541 102747319 + 102747299 102747339 41 TGCTTCCGAGGTCAAGGCGAGTAGCATGTGCGGGAGACTCA TGCTTCCGAGGTCAAGGCGGGTAGCATGTGCGGGAGACTCA < 41bp 0.72558112767077 0.524260129662288 NA NA prediction 0.402641996016964 Functional Loss - TWNK ENSG00000055950;ENSG00000107815 upstream Human other chr10:102747319 chr10:102747318 . . 0 20 hm7G_associated_SNPs_12086 4 0 0 0 1 TWNK chr10:102747370 5'GT 102747370 Upstream 53bp 11449 chr18 21708938 21708938 1 + T C rs142854411 21708939 + 21708919 21708959 41 GTCTAGGAAACTCAGAAGATGCTGTTCAGGTAAACTGTTAA GTCTAGGAAACTCAGAAGACGCTGTTCAGGTAAACTGTTAA < 41bp 0.735294376644856 0.533975457499152 NA NA prediction 0.402637838291409 Functional Loss - TTC39C ENSG00000168234 CDS Human protein_coding chr18:21708939 chr18:21708938 synonymous SNV . 0 20 hm7G_associated_SNPs_12088 0 0 1 0 2 TTC39C chr18:21708850 3'AG 21708850 Downstream 89bp 11450 chr18 21708938 21708938 1 + T C rs142854411 21708939 + 21708919 21708959 41 GTCTAGGAAACTCAGAAGATGCTGTTCAGGTAAACTGTTAA GTCTAGGAAACTCAGAAGACGCTGTTCAGGTAAACTGTTAA < 41bp 0.735294376644856 0.533975457499152 NA NA prediction 0.402637838291409 Functional Loss - TTC39C ENSG00000168234 CDS Human protein_coding chr18:21708939 chr18:21708938 synonymous SNV . 0 20 hm7G_associated_SNPs_12088 0 0 1 0 2 TTC39C chr18:21708947 5'GT 21708947 Upstream 10bp 11451 chr19 4428813 4428813 1 + A G COAD 4428814 + 4428794 4428834 41 GCGAGTTCTCCTTCTTGAAAGACCTCAAAGGCCGGCAGCCC GCGAGTTCTCCTTCTTGAAGGACCTCAAAGGCCGGCAGCCC < 41bp 0.756513444974628 0.555195078774431 NA NA prediction 0.402636732400392 Functional Loss - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4428814 chr19:4428813 synonymous SNV . 0 20 hm7G_associated_SNPs_12089 0 0 1 0 1 CHAF1A chr19:4428887 5'GT 4428887 Upstream 75bp 11452 chr5 5190086 5190086 1 + A G LUAD 5190087 + 5190067 5190107 41 CCTTGTCTCTTGCACAGCCAGGACTGGTGATAAGTCACCAC CCTTGTCTCTTGCACAGCCGGGACTGGTGATAAGTCACCAC < 41bp 0.731454932125366 0.530163867606346 NA NA prediction 0.40258212903804 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5190087 chr5:5190086 synonymous SNV . 0 20 hm7G_associated_SNPs_12092 0 0 0 0 1 ADAMTS16 chr5:5190084 3'AG 5190084 Downstream 3bp 11453 chr15 75105358 75105358 1 + A G UCEC 75105359 + 75105339 75105379 41 GGCTGGAATACCCTTCTGGAGCCATCATGGAGGTGAGGGGC GGCTGGAATACCCTTCTGGGGCCATCATGGAGGTGAGGGGC < 41bp 0.788433282123876 0.587144596277662 NA NA prediction 0.402577371692428 Functional Loss - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75105359 chr15:75105358 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12093 0 0 0 0 2 LMAN1L chr15:75105291 3'AG 75105291 Downstream 68bp 11454 chr15 75105358 75105358 1 + A G UCEC 75105359 + 75105339 75105379 41 GGCTGGAATACCCTTCTGGAGCCATCATGGAGGTGAGGGGC GGCTGGAATACCCTTCTGGGGCCATCATGGAGGTGAGGGGC < 41bp 0.788433282123876 0.587144596277662 NA NA prediction 0.402577371692428 Functional Loss - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75105359 chr15:75105358 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12093 0 0 0 0 2 LMAN1L chr15:75105370 5'GT 75105370 Upstream 13bp 11455 chr3 138192408 138192408 1 + T C LAML 138192409 + 138192389 138192429 41 TCAGGCGACGGCAGCTGGGTGAGATTCAGCTCACAGTGCGC TCAGGCGACGGCAGCTGGGCGAGATTCAGCTCACAGTGCGC < 41bp 0.728303288361296 0.527014922756299 NA NA prediction 0.402576731209994 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138192409 chr3:138192408 synonymous SNV . 0 20 hm7G_associated_SNPs_12094 0 0 0 0 2 ESYT3 chr3:138192378 3'AG 138192378 Downstream 31bp 11456 chr3 138192408 138192408 1 + T C LAML 138192409 + 138192389 138192429 41 TCAGGCGACGGCAGCTGGGTGAGATTCAGCTCACAGTGCGC TCAGGCGACGGCAGCTGGGCGAGATTCAGCTCACAGTGCGC < 41bp 0.728303288361296 0.527014922756299 NA NA prediction 0.402576731209994 Functional Loss - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138192409 chr3:138192408 synonymous SNV . 0 20 hm7G_associated_SNPs_12094 0 0 0 0 2 ESYT3 chr3:138192476 5'GT 138192476 Upstream 69bp 11457 chr7 100319286 100319286 1 + A G GBM 100319287 + 100319267 100319307 41 TGTGACAGCCGAGTCCTGGAGAGGTACCTCTTGGAGGCCAA TGTGACAGCCGAGTCCTGGGGAGGTACCTCTTGGAGGCCAA < 41bp 0.75128349954589 0.550001613051666 NA NA prediction 0.402563772988447 Functional Loss - EPO ENSG00000130427 CDS Human protein_coding chr7:100319287 chr7:100319286 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_12095 0 0 1 0 1 EPO chr7:100319326 5'GT 100319326 Upstream 41bp 11458 chr3 53892804 53892804 1 + T C LUSC 53892805 + 53892785 53892825 41 CGACATAAAGGAACAGTTGTGCTCTGCCCACAAACAGGCGT CGACATAAAGGAACAGTTGCGCTCTGCCCACAAACAGGCGT < 41bp 0.73814231771599 0.536861137063933 NA NA prediction 0.402562361304115 Functional Loss - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53892805 chr3:53892804 nonsynonymous SNV 0.432 0 20 hm7G_associated_SNPs_12096 0 0 0 0 2 IL17RB chr3:53892746 3'AG 53892746 Downstream 59bp 11459 chr3 53892804 53892804 1 + T C LUSC 53892805 + 53892785 53892825 41 CGACATAAAGGAACAGTTGTGCTCTGCCCACAAACAGGCGT CGACATAAAGGAACAGTTGCGCTCTGCCCACAAACAGGCGT < 41bp 0.73814231771599 0.536861137063933 NA NA prediction 0.402562361304115 Functional Loss - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53892805 chr3:53892804 nonsynonymous SNV 0.432 0 20 hm7G_associated_SNPs_12096 0 0 0 0 2 IL17RB chr3:53892845 5'GT 53892845 Upstream 42bp 11460 chr3 49213098 49213098 1 + A G UCEC 49213099 + 49213079 49213119 41 CTTGCACGGCGGCGCTGGGAGGCATTGCCTGCCATGCCCAC CTTGCACGGCGGCGCTGGGGGGCATTGCCTGCCATGCCCAC < 41bp 0.749113168546854 0.547836041666035 NA NA prediction 0.402554253761638 Functional Loss - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49213099 chr3:49213098 nonsynonymous SNV 0.849 4 20 hm7G_associated_SNPs_12097 0 0 0 0 1 KLHDC8B chr3:49213038 3'AG 49213038 Downstream 61bp 11461 chr19 10793271 10793271 1 + A G SKCM 10793272 + 10793252 10793292 41 AGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGAGACCGA AGGGACTCGAGCAAGGGGGGGGACTCGGCTGAGGAGACCGA < 41bp 0.772029748346334 0.570759443421503 NA NA prediction 0.402540609849662 Functional Loss - ILF3 ENSG00000129351 CDS Human protein_coding chr19:10793272 chr19:10793271 nonsynonymous SNV 0.511 1 20 hm7G_associated_SNPs_12100 0 0 1 0 1 ILF3 chr19:10793213 3'AG 10793213 Downstream 59bp 11462 chr2 102785082 102785082 1 + T C LGG 102785083 + 102785063 102785103 41 AACAAACCCACAAGGCCTGTGATTGTGAGCCCAGCTAATGA AACAAACCCACAAGGCCTGCGATTGTGAGCCCAGCTAATGA < 41bp 0.715499611872215 0.514236662028066 NA NA prediction 0.402525899688298 Functional Loss - IL1R1 ENSG00000115594 CDS Human protein_coding chr2:102785083 chr2:102785082 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_12102 0 0 1 0 2 IL1R1 chr2:102785058 3'AG 102785058 Downstream 25bp 11463 chr2 102785082 102785082 1 + T C LGG 102785083 + 102785063 102785103 41 AACAAACCCACAAGGCCTGTGATTGTGAGCCCAGCTAATGA AACAAACCCACAAGGCCTGCGATTGTGAGCCCAGCTAATGA < 41bp 0.715499611872215 0.514236662028066 NA NA prediction 0.402525899688298 Functional Loss - IL1R1 ENSG00000115594 CDS Human protein_coding chr2:102785083 chr2:102785082 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_12102 0 0 1 0 2 IL1R1 chr2:102785123 5'GT 102785123 Upstream 42bp 11464 chr1 22970532 22970532 1 + A G UCEC 22970533 + 22970513 22970553 41 CGGGATGGACGTGGGGCCCAGCTCCCTGCCCCACCTTGGGC CGGGATGGACGTGGGGCCCGGCTCCCTGCCCCACCTTGGGC < 41bp 0.70125761904834 0.464353471236752 NA NA prediction 0.402515238096681 Functional Loss - C1QC ENSG00000159189 CDS Human protein_coding chr1:22970533 chr1:22970532 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_12104 0 0 0 0 1 C1QC chr1:22970504 3'AG 22970504 Downstream 29bp 11465 chr11 46725939 46725939 1 + A G rs147850078 46725940 + 46725920 46725960 41 CCCTCTGGCATCCAGGCAGAGAATATGGTGAGCCCTGGACT CCCTCTGGCATCCAGGCAGGGAATATGGTGAGCCCTGGACT < 41bp 0.739302884975212 0.538051405880907 NA NA prediction 0.402502958188609 Functional Loss - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46725940 chr11:46725939 nonsynonymous SNV 0.028 1 20 hm7G_associated_SNPs_12105 0 0 0 0 1 ZNF408 chr11:46725903 3'AG 46725903 Downstream 37bp 11466 chr11 20629027 20629027 1 + T C LUAD 20629028 + 20629008 20629048 41 AATTTTTGCTTCTGCAGGCTGTGGCATCGCGATGCTGATCA AATTTTTGCTTCTGCAGGCCGTGGCATCGCGATGCTGATCA < 41bp 0.714044382646135 0.512795845030063 NA NA prediction 0.402497075232144 Functional Loss - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20629028 chr11:20629027 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_12106 0 0 0 0 1 SLC6A5 chr11:20629025 3'AG 20629025 Downstream 3bp 11467 chr17 7806346 7806346 1 + T C rs74903197 7806347 + 7806327 7806367 41 CTGACACTGTCATCATCTTTGATTCTGACTGGAACCCCCAT CTGACACTGTCATCATCTTCGATTCTGACTGGAACCCCCAT < 41bp 0.70124450111979 0.48997473811565 NA NA prediction 0.40248900223958 Functional Loss - CHD3 ENSG00000170004 CDS Human protein_coding chr17:7806347 chr17:7806346 synonymous SNV . 0 20 hm7G_associated_SNPs_12107 0 0 1 0 2 CHD3 chr17:7806255 3'AG 7806255 Downstream 92bp 11468 chr17 7806346 7806346 1 + T C rs74903197 7806347 + 7806327 7806367 41 CTGACACTGTCATCATCTTTGATTCTGACTGGAACCCCCAT CTGACACTGTCATCATCTTCGATTCTGACTGGAACCCCCAT < 41bp 0.70124450111979 0.48997473811565 NA NA prediction 0.40248900223958 Functional Loss - CHD3 ENSG00000170004 CDS Human protein_coding chr17:7806347 chr17:7806346 synonymous SNV . 0 20 hm7G_associated_SNPs_12107 0 0 1 0 2 CHD3 chr17:7806379 5'GT 7806379 Upstream 34bp 11469 chr17 27185204 27185204 1 + A G COAD 27185205 + 27185185 27185225 41 GTTGGAAGATCCATGGAAGAGCATGGAATCTGCTGATCTTG GTTGGAAGATCCATGGAAGGGCATGGAATCTGCTGATCTTG < 41bp 0.738810592564075 0.537578187297358 NA NA prediction 0.402464810533433 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27185205 chr17:27185204 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12108 0 0 1 0 2 ERAL1 chr17:27185164 3'AG 27185164 Downstream 41bp 11470 chr17 27185204 27185204 1 + A G COAD 27185205 + 27185185 27185225 41 GTTGGAAGATCCATGGAAGAGCATGGAATCTGCTGATCTTG GTTGGAAGATCCATGGAAGGGCATGGAATCTGCTGATCTTG < 41bp 0.738810592564075 0.537578187297358 NA NA prediction 0.402464810533433 Functional Loss - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27185205 chr17:27185204 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12108 0 0 1 0 2 ERAL1 chr17:27185225 5'GT 27185225 Upstream 22bp 11471 chr12 113706560 113706560 1 + T C UCEC 113706561 + 113706541 113706581 41 CCACAGACCTCGGTGCTGGTGGTGCAGTTTGTCGAGGCCAT CCACAGACCTCGGTGCTGGCGGTGCAGTTTGTCGAGGCCAT < 41bp 0.767808807257547 0.566578340441868 NA NA prediction 0.402460933631358 Functional Loss - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113706561 chr12:113706560 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_12109 0 0 1 0 1 TPCN1 chr12:113706547 3'AG 113706547 Downstream 14bp 11472 chr4 47163453 47163453 1 + T C HNSC 47163454 + 47163434 47163474 41 AAAAATCGAATGATTCGACTGCATCCTGATGGAACAGTTCT AAAAATCGAATGATTCGACCGCATCCTGATGGAACAGTTCT < 41bp 0.701222882939345 0.498865894423581 NA NA prediction 0.402445765878691 Functional Loss - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47163454 chr4:47163453 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_12110 0 0 0 0 1 GABRB1 chr4:47163486 5'GT 47163486 Upstream 34bp 11473 chr1 186266014 186266014 1 + T C rs190597799 186266015 + 186265995 186266035 41 CCTGAAAACAACGATGGCATGGAAAACACTTCCCATTTACC CCTGAAAACAACGATGGCACGGAAAACACTTCCCATTTACC < 41bp 0.727395319524093 0.526177971176658 NA NA prediction 0.40243469669487 Functional Loss - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186266015 chr1:186266014 nonsynonymous SNV 0.878 1 20 hm7G_associated_SNPs_12111 0 0 0 0 1 PRG4 chr1:186266083 5'GT 186266083 Upstream 70bp 11474 chr16 2808512 2808512 1 + A G COAD 2808513 + 2808493 2808533 41 TCTCGCTCACCAACCCCAAAGCAGAAGAAGAAGAAAAAGAA TCTCGCTCACCAACCCCAAGGCAGAAGAAGAAGAAAAAGAA < 41bp 0.733554460192518 0.532337749926917 NA NA prediction 0.402433420531201 Functional Loss - SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2808513 chr16:2808512 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12112 0 0 1 0 2 SRRM2 chr16:2808471 3'AG 2808471 Downstream 42bp 11475 chr16 2808512 2808512 1 + A G COAD 2808513 + 2808493 2808533 41 TCTCGCTCACCAACCCCAAAGCAGAAGAAGAAGAAAAAGAA TCTCGCTCACCAACCCCAAGGCAGAAGAAGAAGAAAAAGAA < 41bp 0.733554460192518 0.532337749926917 NA NA prediction 0.402433420531201 Functional Loss - SRRM2 ENSG00000167978 CDS Human protein_coding chr16:2808513 chr16:2808512 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12112 0 0 1 0 2 SRRM2 chr16:2808548 5'GT 2808548 Upstream 37bp 11476 chr11 95523848 95523848 1 + T G rs201769882 95523849 + 95523829 95523869 41 CCGAAGTGCGGAGACCCCCTGGGCAGGCTGAAAGATGGCGG CCGAAGTGCGGAGACCCCCGGGGCAGGCTGAAAGATGGCGG < 41bp 0.82526690424563 0.624054523405847 NA NA prediction 0.402424761679566 Functional Loss - CEP57 ENSG00000166037 UTR5 Human protein_coding chr11:95523849 chr11:95523848 . . 0 20 hm7G_associated_SNPs_12115 0 0 1 0 1 CEP57 chr11:95523907 5'GT 95523907 Upstream 60bp 11477 chr19 50387731 50387731 1 + T C COAD 50387732 + 50387712 50387752 41 CCAGGCTACGTCCAGGGCATGAGTGATCTTCTCTCCCCGAT CCAGGCTACGTCCAGGGCACGAGTGATCTTCTCTCCCCGAT < 41bp 0.748459834687225 0.547259750146778 NA NA prediction 0.402400169080894 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387732 chr19:50387731 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12118 0 0 1 3 2 TBC1D17 chr19:50387716 3'AG 50387716 Downstream 16bp 11478 chr19 50387731 50387731 1 + T C COAD 50387732 + 50387712 50387752 41 CCAGGCTACGTCCAGGGCATGAGTGATCTTCTCTCCCCGAT CCAGGCTACGTCCAGGGCACGAGTGATCTTCTCTCCCCGAT < 41bp 0.748459834687225 0.547259750146778 NA NA prediction 0.402400169080894 Functional Loss - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50387732 chr19:50387731 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12118 0 0 1 3 2 TBC1D17 chr19:50387816 5'GT 50387816 Upstream 86bp 11479 chr12 8673765 8673765 1 + T G LUSC 8673766 + 8673746 8673786 41 ACTCTCAGGGAGAAAACTGTGTTGTTCTTGTTTATAACCAA ACTCTCAGGGAGAAAACTGGGTTGTTCTTGTTTATAACCAA < 41bp 0.701194319282799 0.395719424438974 NA NA prediction 0.402388638565597 Functional Loss - CLEC4D ENSG00000166527 CDS Human protein_coding chr12:8673766 chr12:8673765 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_12119 0 0 0 0 1 CLEC4D chr12:8673720 3'AG 8673720 Downstream 46bp 11480 chr1 23966201 23966201 1 + A G LIHC 23966202 + 23966182 23966222 41 GAATAGCAGTCCAGCTATGAGGGGAGGTGCCCGTGGCAGGC GAATAGCAGTCCAGCTATGGGGGGAGGTGCCCGTGGCAGGC < 41bp 0.701192699023174 0.488532397061024 NA NA prediction 0.402385398046348 Functional Loss - MDS2 ENSG00000197880 CDS Human protein_coding chr1:23966202 chr1:23966201 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_12120 0 0 0 0 2 MDS2 chr1:23966170 3'AG 23966170 Downstream 32bp 11481 chr1 23966201 23966201 1 + A G LIHC 23966202 + 23966182 23966222 41 GAATAGCAGTCCAGCTATGAGGGGAGGTGCCCGTGGCAGGC GAATAGCAGTCCAGCTATGGGGGGAGGTGCCCGTGGCAGGC < 41bp 0.701192699023174 0.488532397061024 NA NA prediction 0.402385398046348 Functional Loss - MDS2 ENSG00000197880 CDS Human protein_coding chr1:23966202 chr1:23966201 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_12120 0 0 0 0 2 MDS2 chr1:23966285 5'GT 23966285 Upstream 85bp 11482 chr1 67195010 67195010 1 + T C LUSC 67195011 + 67194991 67195031 41 CTGGCATCACCAGACACTTTGCCAACAACCCGTCCCCAGCT CTGGCATCACCAGACACTTCGCCAACAACCCGTCCCCAGCT < 41bp 0.701189553915421 0.491297363401483 NA NA prediction 0.402379107830843 Functional Loss - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67195011 chr1:67195010 synonymous SNV . 0 20 hm7G_associated_SNPs_12121 0 0 0 0 2 SGIP1 chr1:67194947 3'AG 67194947 Downstream 64bp 11483 chr1 67195010 67195010 1 + T C LUSC 67195011 + 67194991 67195031 41 CTGGCATCACCAGACACTTTGCCAACAACCCGTCCCCAGCT CTGGCATCACCAGACACTTCGCCAACAACCCGTCCCCAGCT < 41bp 0.701189553915421 0.491297363401483 NA NA prediction 0.402379107830843 Functional Loss - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67195011 chr1:67195010 synonymous SNV . 0 20 hm7G_associated_SNPs_12121 0 0 0 0 2 SGIP1 chr1:67195102 5'GT 67195102 Upstream 93bp 11484 chr12 97303586 97303586 1 + T C UCEC 97303587 + 97303567 97303607 41 AGGAGATGATATTAAAATATGGGATGCTTCATCTATGACAT AGGAGATGATATTAAAATACGGGATGCTTCATCTATGACAT < 41bp 0.713763098717097 0.512574322911486 NA NA prediction 0.40237755161122 Functional Loss - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97303587 chr12:97303586 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12122 0 0 1 0 2 NEDD1 chr12:97303530 3'AG 97303530 Downstream 57bp 11485 chr12 97303586 97303586 1 + T C UCEC 97303587 + 97303567 97303607 41 AGGAGATGATATTAAAATATGGGATGCTTCATCTATGACAT AGGAGATGATATTAAAATACGGGATGCTTCATCTATGACAT < 41bp 0.713763098717097 0.512574322911486 NA NA prediction 0.40237755161122 Functional Loss - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97303587 chr12:97303586 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12122 0 0 1 0 2 NEDD1 chr12:97303673 5'GT 97303673 Upstream 88bp 11486 chr16 2124283 2124283 1 + T C STAD 2124284 + 2124264 2124304 41 GCCTTGTCCATCTGCAGCGTGGAGATGCCTGACATCATCAT GCCTTGTCCATCTGCAGCGCGGAGATGCCTGACATCATCAT < 41bp 0.733100443350528 0.531921941013768 NA NA prediction 0.40235700467352 Functional Loss - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2124284 chr16:2124283 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_12123 0 0 1 0 1 TSC2 chr16:2124201 3'AG 2124201 Downstream 83bp 11487 chr1 4772053 4772053 1 + T C rs1061968 4772054 + 4772034 4772074 41 CCGTGGACCTGCCCGCCTGTGAGGCCCTGGGCCCGGGGCCG CCGTGGACCTGCCCGCCTGCGAGGCCCTGGGCCCGGGGCCG < 41bp 0.73001978946657 0.528850003634896 NA NA prediction 0.402339571663347 Functional Loss - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4772054 chr1:4772053 synonymous SNV . 0 20 hm7G_associated_SNPs_12125 0 0 0 0 1 AJAP1 chr1:4771960 3'AG 4771960 Downstream 94bp 11488 chr9 130206324 130206324 1 + T C LUAD 130206325 + 130206305 130206345 41 CAGGCTGGAAGATTATATCTGGATCACCACCAGAGCAAGCC CAGGCTGGAAGATTATATCCGGATCACCACCAGAGCAAGCC < 41bp 0.703512418539928 0.502352294044486 NA NA prediction 0.402320248990883 Functional Loss - ZNF79 ENSG00000196152 CDS Human protein_coding chr9:130206325 chr9:130206324 synonymous SNV . 0 20 hm7G_associated_SNPs_12127 0 0 0 0 1 ZNF79 chr9:130206308 3'AG 130206308 Downstream 17bp 11489 chr16 58551980 58551980 1 + A G STAD 58551981 + 58551961 58552001 41 CTTCGGATGGTAGCCACTCAGCCCATTCCTAAAGGCCATGA CTTCGGATGGTAGCCACTCGGCCCATTCCTAAAGGCCATGA < 41bp 0.701144085733459 0.496885090537359 NA NA prediction 0.402288171466918 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58551981 chr16:58551980 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12128 0 0 1 0 2 SETD6 chr16:58551924 3'AG 58551924 Downstream 57bp 11490 chr16 58551980 58551980 1 + A G STAD 58551981 + 58551961 58552001 41 CTTCGGATGGTAGCCACTCAGCCCATTCCTAAAGGCCATGA CTTCGGATGGTAGCCACTCGGCCCATTCCTAAAGGCCATGA < 41bp 0.701144085733459 0.496885090537359 NA NA prediction 0.402288171466918 Functional Loss - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58551981 chr16:58551980 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12128 0 0 1 0 2 SETD6 chr16:58551955 3'AG 58551955 Downstream 26bp 11491 chr20 46264372 46264372 1 + T G rs150487414 46264373 + 46264353 46264393 41 CACATGGGAGTCCTGGTCTTGCCCCAAACCAGCAGAATATC CACATGGGAGTCCTGGTCTGGCCCCAAACCAGCAGAATATC < 41bp 0.701142506759815 0.349550716280684 NA NA prediction 0.402285013519629 Functional Loss - NCOA3 ENSG00000124151 CDS Human protein_coding chr20:46264373 chr20:46264372 synonymous SNV . 0 20 hm7G_associated_SNPs_12129 0 0 1 0 1 NCOA3 chr20:46264457 5'GT 46264457 Upstream 86bp 11492 chr7 97800962 97800962 1 + T C UCEC 97800963 + 97800943 97800983 41 GCCGCGGGGCTGGCCGCCATGCACAAGCTGCACTTCCTGCA GCCGCGGGGCTGGCCGCCACGCACAAGCTGCACTTCCTGCA < 41bp 0.758986435880672 0.557844408482472 NA NA prediction 0.402284054796399 Functional Loss - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97800963 chr7:97800962 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_12130 0 0 1 0 1 LMTK2 chr7:97800986 5'GT 97800986 Upstream 25bp 11493 chr14 103576415 103576415 1 + A G rs729184 103576416 + 103576396 103576436 41 CTGCGCCGACTGGGCCGCCAGCGGAACCAGCATCTCTTGCA CTGCGCCGACTGGGCCGCCGGCGGAACCAGCATCTCTTGCA < 41bp 0.762998845068876 0.561874665780604 NA NA prediction 0.402248358576544 Functional Loss - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103576416 chr14:103576415 nonsynonymous SNV 0.055 0 20 hm7G_associated_SNPs_12133 0 0 1 0 1 EXOC3L4 chr14:103576368 3'AG 103576368 Downstream 48bp 11494 chr11 94592701 94592701 1 + T C rs200567187 94592702 + 94592682 94592722 41 TCCTTCAGAAACATGGAAATGGCCAGCCAGCCAACATGCCG TCCTTCAGAAACATGGAAACGGCCAGCCAGCCAACATGCCG < 41bp 0.701120069836464 0.485233825026301 NA NA prediction 0.402240139672929 Functional Loss - AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94592702 chr11:94592701 synonymous SNV . 0 20 hm7G_associated_SNPs_12135 0 0 1 0 1 AMOTL1 chr11:94592690 3'AG 94592690 Downstream 12bp 11495 chr12 54928965 54928965 1 + T C KIRC 54928966 + 54928946 54928986 41 CAGCCTTGGTGGCTGCCATTGCTAATCTGAAAGCTGGTAAG CAGCCTTGGTGGCTGCCATCGCTAATCTGAAAGCTGGTAAG < 41bp 0.759740954297696 0.558622528785732 NA NA prediction 0.402236851023927 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54928966 chr12:54928965 synonymous SNV . 0 20 hm7G_associated_SNPs_12136 0 0 1 0 2 NCKAP1L chr12:54928888 3'AG 54928888 Downstream 78bp 11496 chr12 54928965 54928965 1 + T C KIRC 54928966 + 54928946 54928986 41 CAGCCTTGGTGGCTGCCATTGCTAATCTGAAAGCTGGTAAG CAGCCTTGGTGGCTGCCATCGCTAATCTGAAAGCTGGTAAG < 41bp 0.759740954297696 0.558622528785732 NA NA prediction 0.402236851023927 Functional Loss - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54928966 chr12:54928965 synonymous SNV . 0 20 hm7G_associated_SNPs_12136 0 0 1 0 2 NCKAP1L chr12:54928981 5'GT 54928981 Upstream 17bp 11497 chr19 3733849 3733849 1 + T C rs115623773 3733850 + 3733830 3733870 41 TGCTGGTGCTGAGAGATCGTGGGCAGTTCCTGGTGAACATT TGCTGGTGCTGAGAGATCGCGGGCAGTTCCTGGTGAACATT < 41bp 0.737707104510664 0.536601070999554 NA NA prediction 0.402212067022219 Functional Loss - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3733850 chr19:3733849 synonymous SNV . 0 20 hm7G_associated_SNPs_12137 0 0 0 0 1 TJP3 chr19:3733751 3'AG 3733751 Downstream 99bp 11498 chr4 100516000 100516000 1 + T C UCEC 100516001 + 100515981 100516021 41 TACACGGCCATTCCCATTGTGGGGCAGGTCTTCCAGAGCCA TACACGGCCATTCCCATTGCGGGGCAGGTCTTCCAGAGCCA < 41bp 0.757912536454311 0.556817948316048 NA NA prediction 0.402189176276526 Functional Loss - MTTP ENSG00000138823 CDS Human other chr4:100516001 chr4:100516000 nonsynonymous SNV 0.257 0 20 hm7G_associated_SNPs_12138 0 0 1 0 1 MTTP chr4:100516040 5'GT 100516040 Upstream 41bp 11499 chrX 129173222 129173222 1 + T C LIHC 129173223 + 129173203 129173243 41 GGTCAGACAGCCATGAAGCTGGCCAGCAGCGACACCATGAA GGTCAGACAGCCATGAAGCCGGCCAGCAGCGACACCATGAA < 41bp 0.749705674300326 0.548617251501936 NA NA prediction 0.40217684559678 Functional Loss - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173223 chrX:129173222 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_12139 0 0 0 0 1 BCORL1 chrX:129173257 5'GT 129173257 Upstream 36bp 11500 chr1 26888135 26888135 1 + A G LUAD 26888136 + 26888116 26888156 41 ACCATTGGCAAAACTGTGGAGTATCTGCACTCACAGGGGGT ACCATTGGCAAAACTGTGGGGTATCTGCACTCACAGGGGGT < 41bp 0.701078222524698 0.489578595235068 NA NA prediction 0.402156445049396 Functional Loss - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26888136 chr1:26888135 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_12140 0 0 1 0 1 RPS6KA1 chr1:26888154 5'GT 26888154 Upstream 20bp 11501 chr9 134062733 134062733 1 + T C rs61751471 134062734 + 134062714 134062754 41 CAGTGTTGACCCCAGTGGCTGCTAACCAAGCCAAGCAGGTA CAGTGTTGACCCCAGTGGCCGCTAACCAAGCCAAGCAGGTA < 41bp 0.747179408574193 0.546106632394746 NA NA prediction 0.402145552358893 Functional Loss - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134062734 chr9:134062733 synonymous SNV . 0 20 hm7G_associated_SNPs_12141 0 0 1 1 1 NUP214 chr9:134062751 5'GT 134062751 Upstream 19bp 11502 chr10 92660427 92660427 1 + T C UCEC 92660428 + 92660408 92660448 41 CTTCCAAGAAAGCCAAGTGTGAGGGCTGAAAAGAATGCCCC CTTCCAAGAAAGCCAAGTGCGAGGGCTGAAAAGAATGCCCC < 41bp 0.734815563753317 0.533743281192919 NA NA prediction 0.402144565120796 Functional Loss - RPP30;RPP30 ENSG00000148688;ENSG00000148688 exonic;splicing Human protein_coding chr10:92660428 chr10:92660427 synonymous SNV 0.990 0 20 hm7G_associated_SNPs_12142 0 0 1 0 1 RPP30 chr10:92660425 3'AG 92660425 Downstream 3bp 11503 chr20 48481277 48481277 1 + T C STAD 48481278 + 48481258 48481298 41 TTGACAGTTGTCATTTACGTGCTGAAGCATATTGACTTGAG TTGACAGTTGTCATTTACGCGCTGAAGCATATTGACTTGAG < 41bp 0.757066094003222 0.555995851316466 NA NA prediction 0.402140485373513 Functional Loss - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48481278 chr20:48481277 nonsynonymous SNV 0.950 0 20 hm7G_associated_SNPs_12144 0 0 1 0 1 SLC9A8 chr20:48481265 3'AG 48481265 Downstream 13bp 11504 chr1 150460486 150460486 1 + T C UCEC 150460487 + 150460467 150460507 41 GAGGCCAGAAAATTGATGCTGTGGCATGGAACACAACCCCC GAGGCCAGAAAATTGATGCCGTGGCATGGAACACAACCCCC < 41bp 0.731053672911448 0.52998540587078 NA NA prediction 0.402136534081336 Functional Loss - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150460487 chr1:150460486 synonymous SNV . 0 20 hm7G_associated_SNPs_12145 0 0 1 0 1 TARS2 chr1:150460530 5'GT 150460530 Upstream 45bp 11505 chr5 141307857 141307857 1 + T C LUSC 141307858 + 141307838 141307878 41 ATCTCCCTTGTGGCACCCATGCTCCTGTGAGTTCTCAGTCC ATCTCCCTTGTGGCACCCACGCTCCTGTGAGTTCTCAGTCC < 41bp 0.701055201904888 0.497725973789101 NA NA prediction 0.402110403809777 Functional Loss - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141307858 chr5:141307857 nonsynonymous SNV 0.087 0 20 hm7G_associated_SNPs_12146 0 0 1 0 1 KIAA0141 chr5:141307863 5'GT 141307863 Upstream 7bp 11506 chr13 30054377 30054377 1 + A G COAD 30054378 + 30054358 30054398 41 GTGAAGAGGCTGGGCTGGCAGCAGCAGGCCGAGCTCCAGGA GTGAAGAGGCTGGGCTGGCGGCAGCAGGCCGAGCTCCAGGA < 41bp 0.736743720517336 0.535689326679236 NA NA prediction 0.4021087876762 Functional Loss - MTUS2 ENSG00000132938 CDS Human protein_coding chr13:30054378 chr13:30054377 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12147 0 0 0 0 1 MTUS2 chr13:30054287 3'AG 30054287 Downstream 91bp 11507 chr10 1042177 1042177 1 + A G CESC 1042178 + 1042158 1042198 41 CAGAGTTTGGAGTATTTGGAGCAAGGTGCTTGTCACGCATC CAGAGTTTGGAGTATTTGGGGCAAGGTGCTTGTCACGCATC < 41bp 0.740007214339578 0.538960287091382 NA NA prediction 0.402093854496392 Functional Loss - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1042178 chr10:1042177 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_12149 0 0 1 0 1 GTPBP4 chr10:1042182 5'GT 1042182 Upstream 6bp 11508 chr7 142566043 142566043 1 + T C LUAD 142566044 + 142566024 142566064 41 CTCCACCTACGAGGACCCCTGTCAGGCCATCCGAGAACTTG CTCCACCTACGAGGACCCCCGTCAGGCCATCCGAGAACTTG < 41bp 0.701043611683523 0.498505278751836 NA NA prediction 0.402087223367045 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566044 chr7:142566043 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12151 0 0 0 0 2 EPHB6 chr7:142565996 3'AG 142565996 Downstream 48bp 11509 chr7 142566043 142566043 1 + T C LUAD 142566044 + 142566024 142566064 41 CTCCACCTACGAGGACCCCTGTCAGGCCATCCGAGAACTTG CTCCACCTACGAGGACCCCCGTCAGGCCATCCGAGAACTTG < 41bp 0.701043611683523 0.498505278751836 NA NA prediction 0.402087223367045 Functional Loss - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566044 chr7:142566043 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12151 0 0 0 0 2 EPHB6 chr7:142566115 5'GT 142566115 Upstream 73bp 11510 chr12 65224252 65224252 1 + T C rs79015227 65224253 + 65224233 65224273 41 ATGAAAGGAGTAATCCTGATGATGACTCCATGGGAATTCAG ATGAAAGGAGTAATCCTGACGATGACTCCATGGGAATTCAG < 41bp 0.701043200443025 0.483055164502376 NA NA prediction 0.402086400886049 Functional Loss - TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65224253 chr12:65224252 synonymous SNV . 0 20 hm7G_associated_SNPs_12152 0 0 0 0 2 TBC1D30 chr12:65224157 3'AG 65224157 Downstream 96bp 11511 chr12 65224252 65224252 1 + T C rs79015227 65224253 + 65224233 65224273 41 ATGAAAGGAGTAATCCTGATGATGACTCCATGGGAATTCAG ATGAAAGGAGTAATCCTGACGATGACTCCATGGGAATTCAG < 41bp 0.701043200443025 0.483055164502376 NA NA prediction 0.402086400886049 Functional Loss - TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65224253 chr12:65224252 synonymous SNV . 0 20 hm7G_associated_SNPs_12152 0 0 0 0 2 TBC1D30 chr12:65224282 5'GT 65224282 Upstream 31bp 11512 chr8 133851761 133851761 1 + T C UCEC 133851762 + 133851742 133851782 41 ATAGTTTCTACACATCACCTGCTTGCTGATGTCTATGGTGT ATAGTTTCTACACATCACCCGCTTGCTGATGTCTATGGTGT < 41bp 0.7221833343586 0.521144487954292 NA NA prediction 0.402077692808614 Functional Loss - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133851762 chr8:133851761 nonsynonymous SNV 0.917 3 20 hm7G_associated_SNPs_12153 0 0 0 0 1 PHF20L1 chr8:133851827 5'GT 133851827 Upstream 67bp 11513 chr9 140327948 140327948 1 + T C LUAD 140327949 + 140327929 140327969 41 CCCCTGGTGACTGTCACCGTGCAGTGCGCCTTCACAGTGGC CCCCTGGTGACTGTCACCGCGCAGTGCGCCTTCACAGTGGC < 41bp 0.724778461820149 0.523740514705605 NA NA prediction 0.402075894229089 Functional Loss - NOXA1 ENSG00000188747 CDS Human protein_coding chr9:140327949 chr9:140327948 nonsynonymous SNV 0.705 4 20 hm7G_associated_SNPs_12154 0 0 0 0 1 NOXA1 chr9:140327905 3'AG 140327905 Downstream 44bp 11514 chr3 12857921 12857921 1 + T C SKCM 12857922 + 12857902 12857942 41 AGCTCCTCCACCATCCGGATGGATGCCCTGGCCTTCTTGCA AGCTCCTCCACCATCCGGACGGATGCCCTGGCCTTCTTGCA < 41bp 0.751637251245622 0.550601244963516 NA NA prediction 0.402072012564213 Functional Loss - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12857922 chr3:12857921 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12156 0 0 0 0 1 CAND2 chr3:12857873 3'AG 12857873 Downstream 49bp 11515 chr16 27639990 27639990 1 + A G LIHC 27639991 + 27639971 27640011 41 TTCTCTTTCAGGATATTAAAGCATTTGAAAAGCAAGGACCC TTCTCTTTCAGGATATTAAGGCATTTGAAAAGCAAGGACCC < 41bp 0.704377871940662 0.503346762147205 NA NA prediction 0.402062219586913 Functional Loss - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27639991 chr16:27639990 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12158 0 0 0 0 1 KIAA0556 chr16:27639982 3'AG 27639982 Downstream 9bp 11516 chr17 37898611 37898611 1 + A G STAD 37898612 + 37898592 37898632 41 CTCCGGAAGACCTTTGCCCAGCCCCTGGGACCCCTCCTGGG CTCCGGAAGACCTTTGCCCGGCCCCTGGGACCCCTCCTGGG < 41bp 0.701023121102866 0.459675108320221 NA NA prediction 0.402046242205732 Functional Loss - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37898612 chr17:37898611 synonymous SNV . 0 20 hm7G_associated_SNPs_12159 0 0 0 0 1 GRB7 chr17:37898709 5'GT 37898709 Upstream 99bp 11517 chr10 7844269 7844269 1 + T G SKCM 7844270 + 7844250 7844290 41 GACGATATTGATGCTGACGTGCTGCAAAATTACCAAGAATA GACGATATTGATGCTGACGGGCTGCAAAATTACCAAGAATA < 41bp 0.901633842095409 0.700612269736257 NA NA prediction 0.402043144718304 Functional Loss - ATP5C1 ENSG00000165629 CDS Human protein_coding chr10:7844270 chr10:7844269 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12160 0 0 1 0 1 ATP5C1 chr10:7844233 3'AG 7844233 Downstream 37bp 11518 chr4 37432261 37432261 1 + T C rs199581276 37432262 + 37432242 37432282 41 GAAGCCTCAGAGTTTGAAATGATTTTGGATGCCGCCATAGA GAAGCCTCAGAGTTTGAAACGATTTTGGATGCCGCCATAGA < 41bp 0.740325892524473 0.539310755692322 NA NA prediction 0.402030273664303 Functional Loss - NWD2 ENSG00000174145 CDS Human protein_coding chr4:37432262 chr4:37432261 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_12162 0 0 0 0 1 NWD2 chr4:37432194 3'AG 37432194 Downstream 68bp 11519 chr12 7360379 7360379 1 + A G COAD 7360380 + 7360360 7360400 41 TTTGAGGCAGCTGTGCAGCAGGATCCTAAGCACATGGAAGT TTTGAGGCAGCTGTGCAGCGGGATCCTAAGCACATGGAAGT < 41bp 0.701001048279253 0.496294973943047 NA NA prediction 0.402002096558506 Functional Loss - PEX5 ENSG00000139197 CDS Human protein_coding chr12:7360380 chr12:7360379 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_12164 0 0 0 0 1 PEX5 chr12:7360398 5'GT 7360398 Upstream 20bp 11520 chr16 3334113 3334113 1 + A G LIHC 3334114 + 3334094 3334134 41 CCTGCCCCAGGAGATCCAGAGCAGGGTGCAGGAGCTGCATC CCTGCCCCAGGAGATCCAGGGCAGGGTGCAGGAGCTGCATC < 41bp 0.765316410274204 0.564320146253018 NA NA prediction 0.401992528042372 Functional Loss - ZNF263 ENSG00000006194 CDS Human protein_coding chr16:3334114 chr16:3334113 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12166 0 0 1 0 1 ZNF263 chr16:3334205 5'GT 3334205 Upstream 93bp 11521 chr19 49518917 49518917 1 + A G UCEC 49518918 + 49518898 49518938 41 CAGTACATGAAGGAGTACCAGGACGCCTTCCTCTTCAACGA CAGTACATGAAGGAGTACCGGGACGCCTTCCTCTTCAACGA < 41bp 0.750180939805296 0.549189768378396 NA NA prediction 0.401982342853799 Functional Loss - RUVBL2 ENSG00000183207 CDS Human protein_coding chr19:49518918 chr19:49518917 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12168 0 0 1 0 1 RUVBL2 chr19:49518943 5'GT 49518943 Upstream 27bp 11522 chr3 10102063 10102063 1 + T C LIHC 10102064 + 10102044 10102084 41 ATTATTGGTGCTGTGACCATGGCTGGCATCATGGCGGCAGA ATTATTGGTGCTGTGACCACGGCTGGCATCATGGCGGCAGA < 41bp 0.758768928387035 0.557780825379702 NA NA prediction 0.401976206014666 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10102064 chr3:10102063 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_12170 0 0 1 0 2 FANCD2 chr3:10101978 3'AG 10101978 Downstream 86bp 11523 chr3 10102063 10102063 1 + T C LIHC 10102064 + 10102044 10102084 41 ATTATTGGTGCTGTGACCATGGCTGGCATCATGGCGGCAGA ATTATTGGTGCTGTGACCACGGCTGGCATCATGGCGGCAGA < 41bp 0.758768928387035 0.557780825379702 NA NA prediction 0.401976206014666 Functional Loss - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10102064 chr3:10102063 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_12170 0 0 1 0 2 FANCD2 chr3:10102087 5'GT 10102087 Upstream 25bp 11524 chr17 61607575 61607575 1 + T C GBM 61607576 + 61607556 61607596 41 AAGTGCAGCAGCCGCAGCTTGTCCCAGCGCCTGTTGTCCCA AAGTGCAGCAGCCGCAGCTCGTCCCAGCGCCTGTTGTCCCA < 41bp 0.709222203033142 0.508250489864174 NA NA prediction 0.401943426337936 Functional Loss - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61607576 chr17:61607575 nonsynonymous SNV 0.698 2 20 hm7G_associated_SNPs_12172 0 0 0 0 1 KCNH6 chr17:61607613 5'GT 61607613 Upstream 39bp 11525 chr5 43615963 43615963 1 + T C COAD 43615964 + 43615944 43615984 41 CCCCAGGTGCGAGCCCCTATGGTTAATCCAACATTAGGTGT CCCCAGGTGCGAGCCCCTACGGTTAATCCAACATTAGGTGT < 41bp 0.748902119766655 0.547940975800822 NA NA prediction 0.401922287931665 Functional Loss - NNT ENSG00000112992 CDS Human protein_coding chr5:43615964 chr5:43615963 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_12174 0 0 1 0 1 NNT chr5:43615950 3'AG 43615950 Downstream 14bp 11526 chr1 2431102 2431102 1 + A G rs138167803 2431103 + 2431083 2431123 41 ACAGACACGTGTACCTAGAAGGGATGGAAGAGGCCTCCATC ACAGACACGTGTACCTAGAGGGGATGGAAGAGGCCTCCATC < 41bp 0.762498068536087 0.561549619690538 NA NA prediction 0.401896897691098 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2431103 chr1:2431102 synonymous SNV . 0 20 hm7G_associated_SNPs_12175 0 0 0 0 2 PLCH2 chr1:2431080 3'AG 2431080 Downstream 23bp 11527 chr1 2431102 2431102 1 + A G rs138167803 2431103 + 2431083 2431123 41 ACAGACACGTGTACCTAGAAGGGATGGAAGAGGCCTCCATC ACAGACACGTGTACCTAGAGGGGATGGAAGAGGCCTCCATC < 41bp 0.762498068536087 0.561549619690538 NA NA prediction 0.401896897691098 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2431103 chr1:2431102 synonymous SNV . 0 20 hm7G_associated_SNPs_12175 0 0 0 0 2 PLCH2 chr1:2431159 5'GT 2431159 Upstream 58bp 11528 chr19 48254308 48254308 1 + A G rs146968654 48254309 + 48254289 48254329 41 CCTTCTGCAACAAGGGCCAAGCCCGGGCCCCAGGACACCGT CCTTCTGCAACAAGGGCCAGGCCCGGGCCCCAGGACACCGT < 41bp 0.700943703024625 0.458616742977323 NA NA prediction 0.401887406049249 Functional Loss 31520064;CRA001302;m7G-miCLIP-Seq;HEK293T;RppH treatment NOP53 ENSG00000105373 CDS Human protein_coding chr19:48254309 chr19:48254308 nonsynonymous SNV 0.026 1 20 hm7G_associated_SNPs_12178 0 0 2 0 1 NOP53 chr19:48254364 5'GT 48254364 Upstream 57bp 11529 chr16 57493505 57493505 1 + T C STAD 57493506 + 57493486 57493526 41 TACACCCGCCGAGCCATGCTGGCTGCCATCTACAACACAAC TACACCCGCCGAGCCATGCCGGCTGCCATCTACAACACAAC < 41bp 0.716236608775329 0.515296960455485 NA NA prediction 0.401879296639688 Functional Loss - COQ9 ENSG00000088682 CDS Human protein_coding chr16:57493506 chr16:57493505 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12179 0 0 1 0 1 COQ9 chr16:57493477 3'AG 57493477 Downstream 29bp 11530 chr6 34825117 34825117 1 + T C LIHC 34825118 + 34825098 34825138 41 TTGTTTAGGTTTCCACCGCTGGACAGCCAAGTAAAAAGCCA TTGTTTAGGTTTCCACCGCCGGACAGCCAAGTAAAAAGCCA < 41bp 0.700921716855882 0.483091343683666 NA NA prediction 0.401843433711764 Functional Loss - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34825118 chr6:34825117 synonymous SNV . 0 20 hm7G_associated_SNPs_12180 0 0 1 0 1 UHRF1BP1 chr6:34825106 3'AG 34825106 Downstream 12bp 11531 chr12 57957971 57957971 1 + T C STAD 57957972 + 57957952 57957992 41 ACCACATCTACTCCATGGATGAGAACCTTGAGTTCCACATC ACCACATCTACTCCATGGACGAGAACCTTGAGTTCCACATC < 41bp 0.700920162936565 0.492987911138411 NA NA prediction 0.401840325873129 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57957972 chr12:57957971 synonymous SNV . 0 20 hm7G_associated_SNPs_12181 0 0 1 0 2 KIF5A chr12:57957891 3'AG 57957891 Downstream 81bp 11532 chr12 57957971 57957971 1 + T C STAD 57957972 + 57957952 57957992 41 ACCACATCTACTCCATGGATGAGAACCTTGAGTTCCACATC ACCACATCTACTCCATGGACGAGAACCTTGAGTTCCACATC < 41bp 0.700920162936565 0.492987911138411 NA NA prediction 0.401840325873129 Functional Loss - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57957972 chr12:57957971 synonymous SNV . 0 20 hm7G_associated_SNPs_12181 0 0 1 0 2 KIF5A chr12:57957995 5'GT 57957995 Upstream 25bp 11533 chr7 150771574 150771574 1 + A G LUAD 150771575 + 150771555 150771595 41 ATTGAGGACACCTATACCCAGGTAAGGTGCTGCCCACAGCA ATTGAGGACACCTATACCCGGGTAAGGTGCTGCCCACAGCA < 41bp 0.781193778490943 0.580294022005324 NA NA prediction 0.401799512971238 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150771575 chr7:150771574 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12184 0 0 1 0 2 SLC4A2 chr7:150771486 3'AG 150771486 Downstream 89bp 11534 chr7 150771574 150771574 1 + A G LUAD 150771575 + 150771555 150771595 41 ATTGAGGACACCTATACCCAGGTAAGGTGCTGCCCACAGCA ATTGAGGACACCTATACCCGGGTAAGGTGCTGCCCACAGCA < 41bp 0.781193778490943 0.580294022005324 NA NA prediction 0.401799512971238 Functional Loss - SLC4A2 ENSG00000164889 CDS Human protein_coding chr7:150771575 chr7:150771574 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12184 0 0 1 0 2 SLC4A2 chr7:150771575 5'GT 150771575 Upstream 2bp 11535 chr9 72741123 72741123 1 + T C GBM 72741124 + 72741104 72741144 41 GTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCCCCGTT GTGAAGCACTTCCAGGAGGCGGCACAGCTCATCTCCCCGTT < 41bp 0.764157438673566 0.563260080931138 NA NA prediction 0.401794715484855 Functional Loss - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72741124 chr9:72741123 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_12185 0 0 0 0 1 MAMDC2 chr9:72741075 3'AG 72741075 Downstream 49bp 11536 chr7 73932493 73932493 1 + T C GBM 73932494 + 73932474 73932514 41 GCCCTGGGAAGGGCCAGTGTGGTGCCACTGCCCTATGAGAG GCCCTGGGAAGGGCCAGTGCGGTGCCACTGCCCTATGAGAG < 41bp 0.767706608318212 0.566812364836011 NA NA prediction 0.401788486964402 Functional Loss - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73932494 chr7:73932493 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_12186 0 0 1 0 1 GTF2IRD1 chr7:73932469 3'AG 73932469 Downstream 25bp 11537 chr8 22020975 22020975 1 + T C rs35457216 22020976 + 22020956 22020996 41 TCGCCTACAAGCCAGCCCCTGGCACCTGCTGCTACATCATG TCGCCTACAAGCCAGCCCCCGGCACCTGCTGCTACATCATG < 41bp 0.760110645288165 0.559218013695191 NA NA prediction 0.401785263185948 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020976 chr8:22020975 synonymous SNV . 0 20 hm7G_associated_SNPs_12187 0 0 0 0 2 SFTPC chr8:22020949 3'AG 22020949 Downstream 27bp 11538 chr8 22020975 22020975 1 + T C rs35457216 22020976 + 22020956 22020996 41 TCGCCTACAAGCCAGCCCCTGGCACCTGCTGCTACATCATG TCGCCTACAAGCCAGCCCCCGGCACCTGCTGCTACATCATG < 41bp 0.760110645288165 0.559218013695191 NA NA prediction 0.401785263185948 Functional Loss - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020976 chr8:22020975 synonymous SNV . 0 20 hm7G_associated_SNPs_12187 0 0 0 0 2 SFTPC chr8:22021059 5'GT 22021059 Upstream 85bp 11539 chr1 44118948 44118948 1 + T C UCEC 44118949 + 44118929 44118969 41 GTAGATACATTGCCTACATTGAATCCCAAGGAGCTCATCGG GTAGATACATTGCCTACATCGAATCCCAAGGAGCTCATCGG < 41bp 0.749286315508231 0.54839551666442 NA NA prediction 0.401781597687622 Functional Loss - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44118949 chr1:44118948 synonymous SNV . 0 20 hm7G_associated_SNPs_12188 0 0 1 0 1 KDM4A chr1:44118984 5'GT 44118984 Upstream 37bp 11540 chr2 103012998 103012998 1 + T C UCEC 103012999 + 103012979 103013019 41 TTGCATTTTCAGCTGTTGTTGATGAAATCCACTCACTGATA TTGCATTTTCAGCTGTTGTCGATGAAATCCACTCACTGATA < 41bp 0.718285431021771 0.517402326468599 NA NA prediction 0.401766209106345 Functional Loss - IL18R1 ENSG00000115604 CDS Human protein_coding chr2:103012999 chr2:103012998 synonymous SNV . 0 20 hm7G_associated_SNPs_12190 0 0 0 0 1 IL18R1 chr2:103012991 3'AG 103012991 Downstream 8bp 11541 chr2 170936487 170936487 1 + T C HNSC 170936488 + 170936468 170936508 41 TGTGGTACTTTTGTATGCCTGAAAGGACTTTGCTGCAAGCA TGTGGTACTTTTGTATGCCCGAAAGGACTTTGCTGCAAGCA < 41bp 0.722656839513481 0.521787313440624 NA NA prediction 0.401739052145715 Functional Loss - UBR3 ENSG00000144357 CDS Human protein_coding chr2:170936488 chr2:170936487 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12193 0 0 1 0 1 UBR3 chr2:170936533 5'GT 170936533 Upstream 47bp 11542 chr9 36052305 36052305 1 + T C rs58611653 36052306 + 36052286 36052326 41 AGGATAACCAAATGTGCCGTGATGTATGTGAACAGGTAAGA AGGATAACCAAATGTGCCGCGATGTATGTGAACAGGTAAGA < 41bp 0.715362682270217 0.514494809129188 NA NA prediction 0.401735746282057 Functional Loss - RECK ENSG00000122707 CDS Human protein_coding chr9:36052306 chr9:36052305 synonymous SNV . 0 20 hm7G_associated_SNPs_12195 0 0 1 0 1 RECK chr9:36052320 5'GT 36052320 Upstream 16bp 11543 chr20 36686021 36686021 1 + A G STAD 36686022 + 36686002 36686042 41 CCTGGCAGCTACTCTCCTCAGGATCCTTCTGCAGGACCCCT CCTGGCAGCTACTCTCCTCGGGATCCTTCTGCAGGACCCCT < 41bp 0.743008173893529 0.54214310036462 NA NA prediction 0.401730147057818 Functional Loss - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36686022 chr20:36686021 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12196 0 0 1 0 2 RPRD1B chr20:36685934 3'AG 36685934 Downstream 88bp 11544 chr20 36686021 36686021 1 + A G STAD 36686022 + 36686002 36686042 41 CCTGGCAGCTACTCTCCTCAGGATCCTTCTGCAGGACCCCT CCTGGCAGCTACTCTCCTCGGGATCCTTCTGCAGGACCCCT < 41bp 0.743008173893529 0.54214310036462 NA NA prediction 0.401730147057818 Functional Loss - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36686022 chr20:36686021 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12196 0 0 1 0 2 RPRD1B chr20:36686046 5'GT 36686046 Upstream 26bp 11545 chr1 43782983 43782983 1 + T C UCEC 43782984 + 43782964 43783004 41 AGTGGGAGGACATCACCTTTGAGGACCTCATCGGGGAGGGG AGTGGGAGGACATCACCTTCGAGGACCTCATCGGGGAGGGG < 41bp 0.742946830428022 0.542086582668952 NA NA prediction 0.401720495518141 Functional Loss - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43782984 chr1:43782983 synonymous SNV . 0 20 hm7G_associated_SNPs_12197 0 0 0 0 1 TIE1 chr1:43783080 5'GT 43783080 Upstream 98bp 11546 chr16 89920957 89920957 1 + A G rs12598737 89920958 + 89920938 89920978 41 TGAAGCTGAAGAAGGTGCAAGAGCAGGAGTTCAACCCCCTC TGAAGCTGAAGAAGGTGCAGGAGCAGGAGTTCAACCCCCTC < 41bp 0.700858932018714 0.48535010869281 NA NA prediction 0.401717864037428 Functional Loss - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89920958 chr16:89920957 synonymous SNV . 0 20 hm7G_associated_SNPs_12198 0 0 1 0 2 SPIRE2 chr16:89920895 3'AG 89920895 Downstream 63bp 11547 chr16 89920957 89920957 1 + A G rs12598737 89920958 + 89920938 89920978 41 TGAAGCTGAAGAAGGTGCAAGAGCAGGAGTTCAACCCCCTC TGAAGCTGAAGAAGGTGCAGGAGCAGGAGTTCAACCCCCTC < 41bp 0.700858932018714 0.48535010869281 NA NA prediction 0.401717864037428 Functional Loss - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89920958 chr16:89920957 synonymous SNV . 0 20 hm7G_associated_SNPs_12198 0 0 1 0 2 SPIRE2 chr16:89921053 5'GT 89921053 Upstream 97bp 11548 chr7 105187471 105187471 1 + T C rs566159815 105187472 + 105187452 105187492 41 CATCTTGTACTCATCTTCTTGGTTTCATGAGAGCCACAGTT CATCTTGTACTCATCTTCTCGGTTTCATGAGAGCCACAGTT < 41bp 0.747733329818198 0.54688416271988 NA NA prediction 0.401698334196636 Functional Loss - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105187472 chr7:105187471 synonymous SNV . 0 20 hm7G_associated_SNPs_12199 0 0 1 0 1 RINT1 chr7:105187530 5'GT 105187530 Upstream 60bp 11549 chr10 124799983 124799983 1 + T C UCEC 124799984 + 124799964 124800004 41 GCCTTGTTTTTTCTTTAGTTGATGGGTATTGAAGTTGACCC GCCTTGTTTTTTCTTTAGTCGATGGGTATTGAAGTTGACCC < 41bp 0.724314005980338 0.523475298656546 NA NA prediction 0.401677414647585 Functional Loss - ACADSB ENSG00000196177 CDS Human protein_coding chr10:124799984 chr10:124799983 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_12201 0 0 0 0 1 ACADSB chr10:124799982 3'AG 124799982 Downstream 2bp 11550 chr4 129043274 129043274 1 + T C HNSC 129043275 + 129043255 129043295 41 AACTTGCTAAAGTTATCAATGATGGCTTATACTATTATGAA AACTTGCTAAAGTTATCAACGATGGCTTATACTATTATGAA < 41bp 0.700928599357683 0.500090949380991 NA NA prediction 0.401675299953385 Functional Loss - LARP1B ENSG00000138709 CDS Human protein_coding chr4:129043275 chr4:129043274 synonymous SNV . 0 20 hm7G_associated_SNPs_12203 0 0 1 0 1 LARP1B chr4:129043343 5'GT 129043343 Upstream 70bp 11551 chr2 26652630 26652630 1 + T C rs149032953 26652631 + 26652611 26652651 41 GTGAGGAGCTCTATAACATTGAGGTAACAGGGTGTGAAAAG GTGAGGAGCTCTATAACATCGAGGTAACAGGGTGTGAAAAG < 41bp 0.713865533234981 0.513030093286652 NA NA prediction 0.401670879896659 Functional Loss - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26652631 chr2:26652630 synonymous SNV . 0 20 hm7G_associated_SNPs_12205 1 0 0 0 1 DRC1 chr2:26652633 5'GT 26652633 Upstream 4bp 11552 chr5 133887864 133887864 1 + T C KIRC 133887865 + 133887845 133887885 41 AGAAAGGTGTGCAGGTGCCTGCCGGGGCAGAGGCCATCCCA AGAAAGGTGTGCAGGTGCCCGCCGGGGCAGAGGCCATCCCA < 41bp 0.743837045733716 0.543003841521995 NA NA prediction 0.401666408423443 Functional Loss - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133887865 chr5:133887864 synonymous SNV . 0 20 hm7G_associated_SNPs_12206 0 0 1 0 1 JADE2 chr5:133887899 5'GT 133887899 Upstream 36bp 11553 chr11 15096669 15096669 1 + T G CHOL 15096670 + 15096650 15096690 41 GAGGACGCGCGCCTCCTGCTGGCTGCACTGGTGCAGGACTA GAGGACGCGCGCCTCCTGCGGGCTGCACTGGTGCAGGACTA < 41bp 0.91523912895639 0.71441251081859 NA NA prediction 0.4016532362756 Functional Loss - CALCB ENSG00000175868 CDS Human protein_coding chr11:15096670 chr11:15096669 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_12207 0 0 0 0 2 CALCB chr11:15096607 3'AG 15096607 Downstream 63bp 11554 chr11 15096669 15096669 1 + T G CHOL 15096670 + 15096650 15096690 41 GAGGACGCGCGCCTCCTGCTGGCTGCACTGGTGCAGGACTA GAGGACGCGCGCCTCCTGCGGGCTGCACTGGTGCAGGACTA < 41bp 0.91523912895639 0.71441251081859 NA NA prediction 0.4016532362756 Functional Loss - CALCB ENSG00000175868 CDS Human protein_coding chr11:15096670 chr11:15096669 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_12207 0 0 0 0 2 CALCB chr11:15096744 5'GT 15096744 Upstream 76bp 11555 chr19 17671228 17671228 1 + A G UCEC 17671229 + 17671209 17671249 41 CATGTCATGAAGTTGCGCCAGGCAGCCCTGAAATCAGCTCG CATGTCATGAAGTTGCGCCGGGCAGCCCTGAAATCAGCTCG < 41bp 0.768937377816443 0.568122378413007 NA NA prediction 0.401629998806872 Functional Loss - COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17671229 chr19:17671228 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_12208 0 0 1 0 2 COLGALT1 chr19:17671157 3'AG 17671157 Downstream 72bp 11556 chr19 17671228 17671228 1 + A G UCEC 17671229 + 17671209 17671249 41 CATGTCATGAAGTTGCGCCAGGCAGCCCTGAAATCAGCTCG CATGTCATGAAGTTGCGCCGGGCAGCCCTGAAATCAGCTCG < 41bp 0.768937377816443 0.568122378413007 NA NA prediction 0.401629998806872 Functional Loss - COLGALT1 ENSG00000130309 CDS Human protein_coding chr19:17671229 chr19:17671228 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_12208 0 0 1 0 2 COLGALT1 chr19:17671274 5'GT 17671274 Upstream 47bp 11557 chr5 173372136 173372136 1 + T C UCEC 173372137 + 173372117 173372157 41 GCGGATTGCCTCCAGACATTGATGAAGGTATGTTTAGAACT GCGGATTGCCTCCAGACATCGATGAAGGTATGTTTAGAACT < 41bp 0.726099474852132 0.525289645156271 NA NA prediction 0.401619659391723 Functional Loss - CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173372137 chr5:173372136 synonymous SNV . 0 20 hm7G_associated_SNPs_12211 0 0 0 0 1 CPEB4 chr5:173372143 5'GT 173372143 Upstream 8bp 11558 chr20 20232387 20232387 1 + T C LUAD 20232388 + 20232368 20232408 41 CTACGACCACCTCATCCTCTGCACCGGGCAGCAGTACCAGG CTACGACCACCTCATCCTCCGCACCGGGCAGCAGTACCAGG < 41bp 0.740161398877997 0.53935161919603 NA NA prediction 0.401619559363935 Functional Loss - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20232388 chr20:20232387 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12212 0 0 0 0 1 CFAP61 chr20:20232407 5'GT 20232407 Upstream 21bp 11559 chrX 48463256 48463256 1 + T C CESC 48463257 + 48463237 48463277 41 GACGGGCAGTGAGGACATGTGCGTGCACTTCTTTGATGTGG GACGGGCAGTGAGGACATGCGCGTGCACTTCTTTGATGTGG < 41bp 0.712941616585997 0.512136769289056 NA NA prediction 0.401609694593884 Functional Loss - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48463257 chrX:48463256 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12215 0 0 1 0 1 WDR13 chrX:48463236 3'AG 48463236 Downstream 21bp 11560 chr4 84502749 84502749 1 + A G STAD 84502750 + 84502730 84502770 41 ATGAGTCACCCATGGAAAAAGGGCTCTCTGGTCTACGAGGA ATGAGTCACCCATGGAAAAGGGGCTCTCTGGTCTACGAGGA < 41bp 0.734685955901588 0.533885398494651 NA NA prediction 0.401601114813873 Functional Loss - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84502750 chr4:84502749 synonymous SNV . 0 20 hm7G_associated_SNPs_12216 0 0 1 0 1 GPAT3 chr4:84502715 3'AG 84502715 Downstream 35bp 11561 chr19 17877525 17877525 1 + T C PRAD 17877526 + 17877506 17877546 41 CGCGTCTCCTCGGACAAGCTGGCGCTGTGCCACCTGGAACT CGCGTCTCCTCGGACAAGCCGGCGCTGTGCCACCTGGAACT < 41bp 0.731720137109264 0.530921097455642 NA NA prediction 0.401598079307243 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17877526 chr19:17877525 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_12217 0 0 1 0 2 FCHO1 chr19:17877478 3'AG 17877478 Downstream 48bp 11562 chr19 17877525 17877525 1 + T C PRAD 17877526 + 17877506 17877546 41 CGCGTCTCCTCGGACAAGCTGGCGCTGTGCCACCTGGAACT CGCGTCTCCTCGGACAAGCCGGCGCTGTGCCACCTGGAACT < 41bp 0.731720137109264 0.530921097455642 NA NA prediction 0.401598079307243 Functional Loss - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17877526 chr19:17877525 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_12217 0 0 1 0 2 FCHO1 chr19:17877619 5'GT 17877619 Upstream 95bp 11563 chr12 48361032 48361032 1 + T G COAD 48361033 + 48361013 48361053 41 ATCCTGGTGCACAACATAGTGATCTTCATGCGGTGCGTCTC ATCCTGGTGCACAACATAGGGATCTTCATGCGGTGCGTCTC < 41bp 0.911680068546321 0.710900926540957 NA NA prediction 0.401558284010727 Functional Loss - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48361033 chr12:48361032 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12218 0 0 1 0 2 TMEM106C chr12:48360991 3'AG 48360991 Downstream 42bp 11564 chr12 48361032 48361032 1 + T G COAD 48361033 + 48361013 48361053 41 ATCCTGGTGCACAACATAGTGATCTTCATGCGGTGCGTCTC ATCCTGGTGCACAACATAGGGATCTTCATGCGGTGCGTCTC < 41bp 0.911680068546321 0.710900926540957 NA NA prediction 0.401558284010727 Functional Loss - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48361033 chr12:48361032 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12218 0 0 1 0 2 TMEM106C chr12:48361044 5'GT 48361044 Upstream 13bp 11565 chr1 210194565 210194565 1 + T C rs71515148 210194566 + 210194546 210194586 41 GTCCTCTATCGGCAGAGTATGATGGATACAGTAGTGAAGCA GTCCTCTATCGGCAGAGTACGATGGATACAGTAGTGAAGCA < 41bp 0.742460266826106 0.541686284595544 NA NA prediction 0.401547964461123 Functional Loss - SYT14 ENSG00000143469 CDS Human protein_coding chr1:210194566 chr1:210194565 synonymous SNV . 0 20 hm7G_associated_SNPs_12219 0 0 0 0 1 SYT14 chr1:210194599 5'GT 210194599 Upstream 35bp 11566 chr11 61727371 61727371 1 + T C KIRC 61727372 + 61727352 61727392 41 CCTGGTGACCAGGTGTCCCTGTTGGCTGTGGATGAGATGCA CCTGGTGACCAGGTGTCCCCGTTGGCTGTGGATGAGATGCA < 41bp 0.700772876514617 0.498993775827439 NA NA prediction 0.401545753029234 Functional Loss - BEST1 ENSG00000167995;ENSG00000167996 CDS Human other chr11:61727372 chr11:61727371 nonsynonymous SNV 0.985 5 20 hm7G_associated_SNPs_12220 0 0 0 0 1 BEST1 chr11:61727364 3'AG 61727364 Downstream 8bp 11567 chr6 26451962 26451962 1 + A G COAD 26451963 + 26451943 26451983 41 CCTTGTTTCTGAGGACCAGAGGAGTGTGCAGCGTGCTGAAG CCTTGTTTCTGAGGACCAGGGGAGTGTGCAGCGTGCTGAAG < 41bp 0.718839328508338 0.518067162094993 NA NA prediction 0.401544332826691 Functional Loss - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26451963 chr6:26451962 nonsynonymous SNV 0.066 2 20 hm7G_associated_SNPs_12221 0 0 0 0 1 BTN3A3 chr6:26451903 3'AG 26451903 Downstream 60bp 11568 chr6 117245883 117245883 1 + T C UCEC 117245884 + 117245864 117245904 41 GAATACATTCTCCTGGCCATGGAGACCCAGTTTAATAATGA GAATACATTCTCCTGGCCACGGAGACCCAGTTTAATAATGA < 41bp 0.739151761707143 0.538381814805816 NA NA prediction 0.401539893802654 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117245884 chr6:117245883 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12222 0 0 0 0 2 RFX6 chr6:117245832 3'AG 117245832 Downstream 52bp 11569 chr6 117245883 117245883 1 + T C UCEC 117245884 + 117245864 117245904 41 GAATACATTCTCCTGGCCATGGAGACCCAGTTTAATAATGA GAATACATTCTCCTGGCCACGGAGACCCAGTTTAATAATGA < 41bp 0.739151761707143 0.538381814805816 NA NA prediction 0.401539893802654 Functional Loss - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117245884 chr6:117245883 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12222 0 0 0 0 2 RFX6 chr6:117245954 5'GT 117245954 Upstream 72bp 11570 chr3 44672649 44672649 1 + A G LIHC 44672650 + 44672630 44672670 41 TTCCTGGCAGCCACATAGCAGCTGAAATTTGCCCGCATCCT TTCCTGGCAGCCACATAGCGGCTGAAATTTGCCCGCATCCT < 41bp 0.706010963744217 0.505241345421603 NA NA prediction 0.401539236645228 Functional Loss - ZNF197;ZNF660-ZNF197 ENSG00000186448 CDS Human protein_coding chr3:44672650 chr3:44672649 synonymous SNV . 0 20 hm7G_associated_SNPs_12223 0 0 1 0 2 ZNF197;ZNF660-ZNF197 chr3:44672554 3'AG 44672554 Downstream 96bp 11571 chr3 44672649 44672649 1 + A G LIHC 44672650 + 44672630 44672670 41 TTCCTGGCAGCCACATAGCAGCTGAAATTTGCCCGCATCCT TTCCTGGCAGCCACATAGCGGCTGAAATTTGCCCGCATCCT < 41bp 0.706010963744217 0.505241345421603 NA NA prediction 0.401539236645228 Functional Loss - ZNF197;ZNF660-ZNF197 ENSG00000186448 CDS Human protein_coding chr3:44672650 chr3:44672649 synonymous SNV . 0 20 hm7G_associated_SNPs_12223 0 0 1 0 2 ZNF197;ZNF660-ZNF197 chr3:44672713 5'GT 44672713 Upstream 65bp 11572 chr15 41146878 41146878 1 + A G LAML 41146879 + 41146859 41146899 41 CCAGCGCATCCATTTCCCCAGTGACAAAGGTGAGATCCTCC CCAGCGCATCCATTTCCCCGGTGACAAAGGTGAGATCCTCC < 41bp 0.700761500760299 0.491519588818016 NA NA prediction 0.401523001520598 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41146879 chr15:41146878 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_12225 0 0 0 0 2 SPINT1 chr15:41146837 3'AG 41146837 Downstream 42bp 11573 chr15 41146878 41146878 1 + A G LAML 41146879 + 41146859 41146899 41 CCAGCGCATCCATTTCCCCAGTGACAAAGGTGAGATCCTCC CCAGCGCATCCATTTCCCCGGTGACAAAGGTGAGATCCTCC < 41bp 0.700761500760299 0.491519588818016 NA NA prediction 0.401523001520598 Functional Loss - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41146879 chr15:41146878 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_12225 0 0 0 0 2 SPINT1 chr15:41146887 5'GT 41146887 Upstream 10bp 11574 chr1 12032997 12032997 1 + T C COAD 12032998 + 12032978 12033018 41 CCTCACTGATGCCACACCATGATGCCTCCACCTTCACCATC CCTCACTGATGCCACACCACGATGCCTCCACCTTCACCATC < 41bp 0.750098375705856 0.549343555655844 NA NA prediction 0.401509640100023 Functional Loss - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12032998 chr1:12032997 synonymous SNV . 0 20 hm7G_associated_SNPs_12227 0 0 1 0 2 PLOD1 chr1:12032929 3'AG 12032929 Downstream 69bp 11575 chr1 12032997 12032997 1 + T C COAD 12032998 + 12032978 12033018 41 CCTCACTGATGCCACACCATGATGCCTCCACCTTCACCATC CCTCACTGATGCCACACCACGATGCCTCCACCTTCACCATC < 41bp 0.750098375705856 0.549343555655844 NA NA prediction 0.401509640100023 Functional Loss - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12032998 chr1:12032997 synonymous SNV . 0 20 hm7G_associated_SNPs_12227 0 0 1 0 2 PLOD1 chr1:12033054 5'GT 12033054 Upstream 58bp 11576 chr3 64184508 64184508 1 - A C SKCM 64184507 - 64184487 64184527 41 CAGATGATGACTCAGGCTGTGCTTTGGAAGAGTATGCCTGG CAGATGATGACTCAGGCTGGGCTTTGGAAGAGTATGCCTGG < 41bp 0.908022359447222 0.707272245387997 NA NA prediction 0.401500228118449 Functional Loss - PRICKLE2 ENSG00000163637 CDS Human protein_coding chr3:64184507 chr3:64184508 nonsynonymous SNV 0.856 5 20 hm7G_associated_SNPs_12228 0 0 0 0 1 PRICKLE2 chr3:64184460 5'GT 64184460 Upstream 49bp 11577 chr1 151638486 151638486 1 + T C rs150091333 151638487 + 151638467 151638507 41 AAGTGATCAGTCACTCCTTTGGTAAGTACCAGTGGCTGATA AAGTGATCAGTCACTCCTTCGGTAAGTACCAGTGGCTGATA < 41bp 0.700746304126949 0.49300037671904 NA NA prediction 0.401492608253897 Functional Loss - SNX27 ENSG00000143376 CDS Human protein_coding chr1:151638487 chr1:151638486 synonymous SNV . 0 20 hm7G_associated_SNPs_12230 0 0 0 0 2 SNX27 chr1:151638409 3'AG 151638409 Downstream 78bp 11578 chr1 151638486 151638486 1 + T C rs150091333 151638487 + 151638467 151638507 41 AAGTGATCAGTCACTCCTTTGGTAAGTACCAGTGGCTGATA AAGTGATCAGTCACTCCTTCGGTAAGTACCAGTGGCTGATA < 41bp 0.700746304126949 0.49300037671904 NA NA prediction 0.401492608253897 Functional Loss - SNX27 ENSG00000143376 CDS Human protein_coding chr1:151638487 chr1:151638486 synonymous SNV . 0 20 hm7G_associated_SNPs_12230 0 0 0 0 2 SNX27 chr1:151638487 5'GT 151638487 Upstream 2bp 11579 chr9 35607978 35607978 1 + T C rs7018639 35607979 + 35607959 35607999 41 AGCTCATCGCCCGAGTACCTGCAGACCCTGACTACCTACCA AGCTCATCGCCCGAGTACCCGCAGACCCTGACTACCTACCA < 41bp 0.733410969736078 0.532665308073968 NA NA prediction 0.401491323324219 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607979 chr9:35607978 synonymous SNV . 0 20 hm7G_associated_SNPs_12231 0 0 1 2 2 TESK1 chr9:35607925 3'AG 35607925 Downstream 54bp 11580 chr9 35607978 35607978 1 + T C rs7018639 35607979 + 35607959 35607999 41 AGCTCATCGCCCGAGTACCTGCAGACCCTGACTACCTACCA AGCTCATCGCCCGAGTACCCGCAGACCCTGACTACCTACCA < 41bp 0.733410969736078 0.532665308073968 NA NA prediction 0.401491323324219 Functional Loss - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607979 chr9:35607978 synonymous SNV . 0 20 hm7G_associated_SNPs_12231 0 0 1 2 2 TESK1 chr9:35608008 5'GT 35608008 Upstream 31bp 11581 chr7 72396967 72396967 1 + T C UCEC 72396968 + 72396948 72396988 41 AGGATGGTGTGTAGCCCAGTGACTGTGAGGATCGCCCCTCC AGGATGGTGTGTAGCCCAGCGACTGTGAGGATCGCCCCTCC < 41bp 0.700729194931015 0.490881894118417 NA NA prediction 0.401458389862031 Functional Loss - POM121 ENSG00000196313 CDS Human protein_coding chr7:72396968 chr7:72396967 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_12234 0 0 0 0 1 POM121 chr7:72397015 5'GT 72397015 Upstream 49bp 11582 chr17 73750720 73750720 1 + T C STAD 73750721 + 73750701 73750741 41 ACCAACTCCCTGCACAGGATGACCACGACCAGTGCTGCTGC ACCAACTCCCTGCACAGGACGACCACGACCAGTGCTGCTGC < 41bp 0.700727023656635 0.497419170553493 NA NA prediction 0.40145404731327 Functional Loss - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73750721 chr17:73750720 nonsynonymous SNV 0.824 1 20 hm7G_associated_SNPs_12235 0 0 1 0 1 ITGB4 chr17:73750657 3'AG 73750657 Downstream 64bp 11583 chr9 96312910 96312910 1 + T C UCEC 96312911 + 96312891 96312931 41 TTCGGCGTCAGGAGCTAGATGCCTTCCTGGCTCAGGCGCTG TTCGGCGTCAGGAGCTAGACGCCTTCCTGGCTCAGGCGCTG < 41bp 0.740210269476641 0.539490061440188 NA NA prediction 0.401440416072905 Functional Loss - FAM120A ENSG00000048828 CDS Human protein_coding chr9:96312911 chr9:96312910 synonymous SNV . 0 20 hm7G_associated_SNPs_12236 0 0 1 0 2 FAM120A chr9:96312859 3'AG 96312859 Downstream 52bp 11584 chr9 96312910 96312910 1 + T C UCEC 96312911 + 96312891 96312931 41 TTCGGCGTCAGGAGCTAGATGCCTTCCTGGCTCAGGCGCTG TTCGGCGTCAGGAGCTAGACGCCTTCCTGGCTCAGGCGCTG < 41bp 0.740210269476641 0.539490061440188 NA NA prediction 0.401440416072905 Functional Loss - FAM120A ENSG00000048828 CDS Human protein_coding chr9:96312911 chr9:96312910 synonymous SNV . 0 20 hm7G_associated_SNPs_12236 0 0 1 0 2 FAM120A chr9:96312973 5'GT 96312973 Upstream 64bp 11585 chr9 34512154 34512154 1 + T C UCEC 34512155 + 34512135 34512175 41 AAAACCTTAACTTCTTCTCTGTGTCATCTGACGGCAGGATT AAAACCTTAACTTCTTCTCCGTGTCATCTGACGGCAGGATT < 41bp 0.732352165943374 0.531635557898238 NA NA prediction 0.401433216090273 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34512155 chr9:34512154 synonymous SNV . 0 20 hm7G_associated_SNPs_12237 0 0 0 0 2 DNAI1 chr9:34512107 3'AG 34512107 Downstream 48bp 11586 chr9 34512154 34512154 1 + T C UCEC 34512155 + 34512135 34512175 41 AAAACCTTAACTTCTTCTCTGTGTCATCTGACGGCAGGATT AAAACCTTAACTTCTTCTCCGTGTCATCTGACGGCAGGATT < 41bp 0.732352165943374 0.531635557898238 NA NA prediction 0.401433216090273 Functional Loss - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34512155 chr9:34512154 synonymous SNV . 0 20 hm7G_associated_SNPs_12237 0 0 0 0 2 DNAI1 chr9:34512196 5'GT 34512196 Upstream 43bp 11587 chr15 65936825 65936825 1 + A G HNSC 65936826 + 65936806 65936846 41 GGGGCCAGAGCCCAACCCCAGGCCAAAGCAGAAAGCAAACC GGGGCCAGAGCCCAACCCCGGGCCAAAGCAGAAAGCAAACC < 41bp 0.70070622819605 0.484521977039369 NA NA prediction 0.4014124563921 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65936826 chr15:65936825 nonsynonymous SNV 0.033 0 20 hm7G_associated_SNPs_12239 0 0 0 0 2 SLC24A1 chr15:65936765 3'AG 65936765 Downstream 61bp 11588 chr15 65936825 65936825 1 + A G HNSC 65936826 + 65936806 65936846 41 GGGGCCAGAGCCCAACCCCAGGCCAAAGCAGAAAGCAAACC GGGGCCAGAGCCCAACCCCGGGCCAAAGCAGAAAGCAAACC < 41bp 0.70070622819605 0.484521977039369 NA NA prediction 0.4014124563921 Functional Loss - SLC24A1 ENSG00000074621 CDS Human protein_coding chr15:65936826 chr15:65936825 nonsynonymous SNV 0.033 0 20 hm7G_associated_SNPs_12239 0 0 0 0 2 SLC24A1 chr15:65936851 5'GT 65936851 Upstream 27bp 11589 chr17 72349681 72349681 1 + A G LUSC 72349682 + 72349662 72349702 41 GATCAACTCTTCCCCTGACAGCAGTGAGAACCTGTCGGAGA GATCAACTCTTCCCCTGACGGCAGTGAGAACCTGTCGGAGA < 41bp 0.760948663879883 0.560244212079627 NA NA prediction 0.401408903600512 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349682 chr17:72349681 nonsynonymous SNV 0.812 1 20 hm7G_associated_SNPs_12240 0 0 0 0 2 KIF19 chr17:72349633 3'AG 72349633 Downstream 49bp 11590 chr17 72349681 72349681 1 + A G LUSC 72349682 + 72349662 72349702 41 GATCAACTCTTCCCCTGACAGCAGTGAGAACCTGTCGGAGA GATCAACTCTTCCCCTGACGGCAGTGAGAACCTGTCGGAGA < 41bp 0.760948663879883 0.560244212079627 NA NA prediction 0.401408903600512 Functional Loss - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349682 chr17:72349681 nonsynonymous SNV 0.812 1 20 hm7G_associated_SNPs_12240 0 0 0 0 2 KIF19 chr17:72349720 5'GT 72349720 Upstream 40bp 11591 chr1 18618480 18618480 1 + A G UCEC 18618481 + 18618461 18618501 41 GGTGTACCAGTCCACTGTGAGGTGAGTGCCTGGGGGTGGCG GGTGTACCAGTCCACTGTGGGGTGAGTGCCTGGGGGTGGCG < 41bp 0.762183913800971 0.561489527948631 NA NA prediction 0.401388771704681 Functional Loss - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18618481 chr1:18618480 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_12242 0 0 0 0 1 IGSF21 chr1:18618481 5'GT 18618481 Upstream 2bp 11592 chr7 6624663 6624663 1 + T C STAD 6624664 + 6624644 6624684 41 CAGGTGTGTGTAACTGGTGTGTGCACCGTTTCGACCATCAC CAGGTGTGTGTAACTGGTGCGTGCACCGTTTCGACCATCAC < 41bp 0.739694395197117 0.539000877306595 NA NA prediction 0.401387035781044 Functional Loss - ZDHHC4 ENSG00000136247 CDS Human protein_coding chr7:6624664 chr7:6624663 synonymous SNV . 0 20 hm7G_associated_SNPs_12243 0 0 1 0 1 ZDHHC4 chr7:6624647 3'AG 6624647 Downstream 17bp 11593 chr12 99042441 99042441 1 + T C UCEC 99042442 + 99042422 99042462 41 GCAGCTATGCTGATTAAAATGATACTTAAAAAAGATAATGA GCAGCTATGCTGATTAAAACGATACTTAAAAAAGATAATGA < 41bp 0.718018135835877 0.517331533590269 NA NA prediction 0.401373204491216 Functional Loss - APAF1 ENSG00000120868 CDS Human protein_coding chr12:99042442 chr12:99042441 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_12244 0 0 1 0 1 APAF1 chr12:99042404 3'AG 99042404 Downstream 38bp 11594 chr19 50918172 50918172 1 + A G STAD 50918173 + 50918153 50918193 41 ATGGACTGCAAGGGCCTGGAGGCCGTGCGCAGGGACAACTG ATGGACTGCAAGGGCCTGGGGGCCGTGCGCAGGGACAACTG < 41bp 0.792677731322258 0.59199485054229 NA NA prediction 0.401365761559937 Functional Loss - POLD1 ENSG00000062822 CDS Human protein_coding chr19:50918173 chr19:50918172 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_12246 0 0 1 0 1 POLD1 chr19:50918247 5'GT 50918247 Upstream 76bp 11595 chr8 133923689 133923689 1 + T C LIHC 133923690 + 133923670 133923710 41 TCTGTGCAGGTGGGTTGTCTGACCAGGGAGCGTTTAGGAGT TCTGTGCAGGTGGGTTGTCCGACCAGGGAGCGTTTAGGAGT < 41bp 0.700680922269645 0.491564152065806 NA NA prediction 0.40136184453929 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133923690 chr8:133923689 nonsynonymous SNV 0.343 2 20 hm7G_associated_SNPs_12248 0 0 0 0 2 TG chr8:133923622 3'AG 133923622 Downstream 68bp 11596 chr8 133923689 133923689 1 + T C LIHC 133923690 + 133923670 133923710 41 TCTGTGCAGGTGGGTTGTCTGACCAGGGAGCGTTTAGGAGT TCTGTGCAGGTGGGTTGTCCGACCAGGGAGCGTTTAGGAGT < 41bp 0.700680922269645 0.491564152065806 NA NA prediction 0.40136184453929 Functional Loss - TG ENSG00000042832 CDS Human protein_coding chr8:133923690 chr8:133923689 nonsynonymous SNV 0.343 2 20 hm7G_associated_SNPs_12248 0 0 0 0 2 TG chr8:133923778 5'GT 133923778 Upstream 90bp 11597 chr8 24199123 24199123 1 + T C LUSC 24199124 + 24199104 24199144 41 TCCTCAGTGATACCATGTGTGGGAAGTTGTTCTGTCAAGGT TCCTCAGTGATACCATGTGCGGGAAGTTGTTCTGTCAAGGT < 41bp 0.700666854607919 0.499988381235455 NA NA prediction 0.401333709215839 Functional Loss - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24199124 chr8:24199123 synonymous SNV . 0 20 hm7G_associated_SNPs_12251 0 0 0 0 1 ADAM28 chr8:24199111 3'AG 24199111 Downstream 13bp 11598 chr5 149008522 149008522 1 + T C UCEC 149008523 + 149008503 149008543 41 GTGCCCTCTATTCCCACCATGAACCAGGTGAGTATAGGAGA GTGCCCTCTATTCCCACCACGAACCAGGTGAGTATAGGAGA < 41bp 0.719659986828933 0.518993144950622 NA NA prediction 0.401333683756621 Functional Loss - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149008523 chr5:149008522 nonsynonymous SNV 0.020 1 20 hm7G_associated_SNPs_12252 0 0 0 0 1 ARHGEF37 chr5:149008529 5'GT 149008529 Upstream 8bp 11599 chr17 27010046 27010046 1 + T C UCEC 27010047 + 27010027 27010067 41 GAGCCCCTTGTCCGGCAGGTGCTGAGGCAAACCTTCCAAGA GAGCCCCTTGTCCGGCAGGCGCTGAGGCAAACCTTCCAAGA < 41bp 0.761794054457852 0.561131335909204 NA NA prediction 0.401325437097295 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27010047 chr17:27010046 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12253 0 0 1 0 2 SUPT6H chr17:27009960 3'AG 27009960 Downstream 87bp 11600 chr17 27010046 27010046 1 + T C UCEC 27010047 + 27010027 27010067 41 GAGCCCCTTGTCCGGCAGGTGCTGAGGCAAACCTTCCAAGA GAGCCCCTTGTCCGGCAGGCGCTGAGGCAAACCTTCCAAGA < 41bp 0.761794054457852 0.561131335909204 NA NA prediction 0.401325437097295 Functional Loss - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27010047 chr17:27010046 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12253 0 0 1 0 2 SUPT6H chr17:27010110 5'GT 27010110 Upstream 65bp 11601 chr1 231337181 231337181 1 + T C HNSC 231337182 + 231337162 231337202 41 CCCTGGAGCCGAAAGTGTCTGCGGAGTTTGATCTGACTTTG CCCTGGAGCCGAAAGTGTCCGCGGAGTTTGATCTGACTTTG < 41bp 0.74808040412516 0.547418281587762 NA NA prediction 0.401324245074796 Functional Loss - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231337182 chr1:231337181 synonymous SNV . 0 20 hm7G_associated_SNPs_12254 0 0 0 0 2 TRIM67 chr1:231337104 3'AG 231337104 Downstream 78bp 11602 chr1 231337181 231337181 1 + T C HNSC 231337182 + 231337162 231337202 41 CCCTGGAGCCGAAAGTGTCTGCGGAGTTTGATCTGACTTTG CCCTGGAGCCGAAAGTGTCCGCGGAGTTTGATCTGACTTTG < 41bp 0.74808040412516 0.547418281587762 NA NA prediction 0.401324245074796 Functional Loss - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231337182 chr1:231337181 synonymous SNV . 0 20 hm7G_associated_SNPs_12254 0 0 0 0 2 TRIM67 chr1:231337263 5'GT 231337263 Upstream 83bp 11603 chr11 94320333 94320333 1 + T C rs148847419 94320334 + 94320314 94320354 41 CGGTTCTGGAATTCATGACTGCTCTCTGTCAAAGAACTGGC CGGTTCTGGAATTCATGACCGCTCTCTGTCAAAGAACTGGC < 41bp 0.75530958809097 0.554650425649027 NA NA prediction 0.401318324883886 Functional Loss - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94320334 chr11:94320333 synonymous SNV . 0 20 hm7G_associated_SNPs_12255 0 0 0 1 1 PIWIL4 chr11:94320413 5'GT 94320413 Upstream 81bp 11604 chr3 14813666 14813666 1 + T C UCEC 14813667 + 14813647 14813687 41 AGCAGCTCCTCATTGGCCCTGGAAGACTATGTGGAGAAGGA AGCAGCTCCTCATTGGCCCCGGAAGACTATGTGGAGAAGGA < 41bp 0.741851419982 0.541194660035204 NA NA prediction 0.401313519893592 Functional Loss - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14813667 chr3:14813666 nonsynonymous SNV 0.084 2 20 hm7G_associated_SNPs_12256 0 0 0 0 1 C3orf20 chr3:14813708 5'GT 14813708 Upstream 43bp 11605 chr4 39287199 39287199 1 + T G rs147600266 39287200 + 39287180 39287220 41 CTTTCTGGATACAGAGAAATGAAACAACGGTGACCTCTCCA CTTTCTGGATACAGAGAAAGGAAACAACGGTGACCTCTCCA < 41bp 0.70065068914738 0.390520350351002 NA NA prediction 0.40130137829476 Functional Loss - WDR19 ENSG00000157796 UTR3 Human protein_coding chr4:39287200 chr4:39287199 . . 0 20 hm7G_associated_SNPs_12257 0 0 1 0 1 WDR19 chr4:39287107 3'AG 39287107 Downstream 93bp 11606 chr8 143562903 143562903 1 + A G THYM 143562904 + 143562884 143562924 41 GAGCACCTGGCCAAGGCTCAGCGAGGGCTGCCTGGGGAGGG GAGCACCTGGCCAAGGCTCGGCGAGGGCTGCCTGGGGAGGG < 41bp 0.76507237944425 0.564421826400555 NA NA prediction 0.401301106087389 Functional Loss - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143562904 chr8:143562903 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_12258 0 0 0 0 1 ADGRB1 chr8:143562878 3'AG 143562878 Downstream 26bp 11607 chrX 105144613 105144613 1 + T C rs372413385 105144614 + 105144594 105144634 41 CATCTTTGTCTTTGCAGAGTGATGTGTGGTCTGTGGGAATT CATCTTTGTCTTTGCAGAGCGATGTGTGGTCTGTGGGAATT < 41bp 0.740391076543494 0.539743859001628 NA NA prediction 0.401294435083732 Functional Loss - NRK ENSG00000123572 CDS Human protein_coding chrX:105144614 chrX:105144613 synonymous SNV . 0 20 hm7G_associated_SNPs_12259 0 0 0 0 1 NRK chrX:105144665 5'GT 105144665 Upstream 53bp 11608 chr6 132190553 132190553 1 + T C rs113723070 132190554 + 132190534 132190574 41 TGAATAAATATTTGGGGGATGTTAAAAATATTAAAGTTATC TGAATAAATATTTGGGGGACGTTAAAAATATTAAAGTTATC < 41bp 0.701227916014653 0.500582266670319 NA NA prediction 0.401291298688668 Functional Loss - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132190554 chr6:132190553 synonymous SNV . 0 20 hm7G_associated_SNPs_12260 2 0 1 0 2 ENPP1 chr6:132190498 3'AG 132190498 Downstream 56bp 11609 chr6 132190553 132190553 1 + T C rs113723070 132190554 + 132190534 132190574 41 TGAATAAATATTTGGGGGATGTTAAAAATATTAAAGTTATC TGAATAAATATTTGGGGGACGTTAAAAATATTAAAGTTATC < 41bp 0.701227916014653 0.500582266670319 NA NA prediction 0.401291298688668 Functional Loss - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132190554 chr6:132190553 synonymous SNV . 0 20 hm7G_associated_SNPs_12260 2 0 1 0 2 ENPP1 chr6:132190629 5'GT 132190629 Upstream 77bp 11610 chr11 71944787 71944787 1 + A G LIHC 71944788 + 71944768 71944808 41 CCCAGTTCATCTCCAAGAAAGGTGACTGTTCCAGATATGCT CCCAGTTCATCTCCAAGAAGGGTGACTGTTCCAGATATGCT < 41bp 0.73874685463278 0.538121873698753 NA NA prediction 0.401249961868055 Functional Loss - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71944788 chr11:71944787 synonymous SNV . 0 20 hm7G_associated_SNPs_12268 0 0 1 0 2 INPPL1 chr11:71944699 3'AG 71944699 Downstream 89bp 11611 chr11 71944787 71944787 1 + A G LIHC 71944788 + 71944768 71944808 41 CCCAGTTCATCTCCAAGAAAGGTGACTGTTCCAGATATGCT CCCAGTTCATCTCCAAGAAGGGTGACTGTTCCAGATATGCT < 41bp 0.73874685463278 0.538121873698753 NA NA prediction 0.401249961868055 Functional Loss - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71944788 chr11:71944787 synonymous SNV . 0 20 hm7G_associated_SNPs_12268 0 0 1 0 2 INPPL1 chr11:71944788 5'GT 71944788 Upstream 2bp 11612 chr6 126073212 126073212 1 + T C rs112235907 126073213 + 126073193 126073233 41 TATCTGAGTTGAGAAGACTTGTGCCAACTGCTTTTGAAAAA TATCTGAGTTGAGAAGACTCGTGCCAACTGCTTTTGAAAAA < 41bp 0.729284036666127 0.528664539659055 NA NA prediction 0.401238994014143 Functional Loss - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126073213 chr6:126073212 synonymous SNV . 0 20 hm7G_associated_SNPs_12269 0 0 1 0 2 HEY2 chr6:126073153 3'AG 126073153 Downstream 60bp 11613 chr6 126073212 126073212 1 + T C rs112235907 126073213 + 126073193 126073233 41 TATCTGAGTTGAGAAGACTTGTGCCAACTGCTTTTGAAAAA TATCTGAGTTGAGAAGACTCGTGCCAACTGCTTTTGAAAAA < 41bp 0.729284036666127 0.528664539659055 NA NA prediction 0.401238994014143 Functional Loss - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126073213 chr6:126073212 synonymous SNV . 0 20 hm7G_associated_SNPs_12269 0 0 1 0 2 HEY2 chr6:126073236 5'GT 126073236 Upstream 25bp 11614 chr7 157000445 157000445 1 + T C UCEC 157000446 + 157000426 157000466 41 CCTTTTACTTTAGAAGAGCTGATAATGTTGTCTCGATGCCT CCTTTTACTTTAGAAGAGCCGATAATGTTGTCTCGATGCCT < 41bp 0.722154092125427 0.521534755024723 NA NA prediction 0.401238674201408 Functional Loss - UBE3C ENSG00000009335 CDS Human protein_coding chr7:157000446 chr7:157000445 nonsynonymous SNV 0.056 4 20 hm7G_associated_SNPs_12270 0 0 1 0 1 UBE3C chr7:157000397 3'AG 157000397 Downstream 49bp 11615 chr14 100172994 100172994 1 + A G UCEC 100172995 + 100172975 100173015 41 TTTCTCCAGCTCCTTGGTTAGCTTAATGGAAACATTCAACG TTTCTCCAGCTCCTTGGTTGGCTTAATGGAAACATTCAACG < 41bp 0.710626839824805 0.510009647069768 NA NA prediction 0.401234385510072 Functional Loss - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100172995 chr14:100172994 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_12271 0 0 0 0 1 CYP46A1 chr14:100172984 3'AG 100172984 Downstream 11bp 11616 chr4 41956155 41956155 1 + T G SKCM 41956156 + 41956136 41956176 41 CCTGCTTGCCCACTGTTTGTGAGAAGACTTTGTCTCCAGAG CCTGCTTGCCCACTGTTTGGGAGAAGACTTTGTCTCCAGAG < 41bp 0.700613218936078 0.401787929545751 NA NA prediction 0.401226437872156 Functional Loss - TMEM33 ENSG00000109133 CDS Human protein_coding chr4:41956156 chr4:41956155 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12274 0 0 1 0 1 TMEM33 chr4:41956087 3'AG 41956087 Downstream 69bp 11617 chr21 34619102 34619102 1 + A G UCEC 34619103 + 34619083 34619123 41 CCTCACAGATGAGTGGAGAAGCACACACGAGGCCTATGTCA CCTCACAGATGAGTGGAGAGGCACACACGAGGCCTATGTCA < 41bp 0.754695663562103 0.554089478017157 NA NA prediction 0.40121237108989 Functional Loss - IFNAR2 ENSG00000159110;ENSG00000249624 CDS Human protein_coding chr21:34619103 chr21:34619102 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_12276 0 0 1 0 2 IFNAR2 chr21:34619023 3'AG 34619023 Downstream 80bp 11618 chr21 34619102 34619102 1 + A G UCEC 34619103 + 34619083 34619123 41 CCTCACAGATGAGTGGAGAAGCACACACGAGGCCTATGTCA CCTCACAGATGAGTGGAGAGGCACACACGAGGCCTATGTCA < 41bp 0.754695663562103 0.554089478017157 NA NA prediction 0.40121237108989 Functional Loss - IFNAR2 ENSG00000159110;ENSG00000249624 CDS Human other chr21:34619103 chr21:34619102 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_12276 0 0 1 0 2 IFNAR2 chr21:34619195 5'GT 34619195 Upstream 94bp 11619 chr10 5005692 5005692 1 + T G LIHC 5005693 + 5005673 5005713 41 GGTCACTTCATGCCTGTCCTGGGATTTGGCACCTATGCGCC GGTCACTTCATGCCTGTCCGGGGATTTGGCACCTATGCGCC < 41bp 0.700601133853044 0.365237195523233 NA NA prediction 0.401202267706088 Functional Loss - AKR1C1 ENSG00000187134 CDS Human protein_coding chr10:5005693 chr10:5005692 nonsynonymous SNV 0.568 3 20 hm7G_associated_SNPs_12277 0 0 1 0 1 AKR1C1 chr10:5005720 5'GT 5005720 Upstream 29bp 11620 chr11 562154 562154 1 + T C rs146160844 562155 + 562135 562175 41 CTGCCACAAGAGTGTCCAGTGGGCGCCCAGGCCACCTGCGG CTGCCACAAGAGTGTCCAGCGGGCGCCCAGGCCACCTGCGG < 41bp 0.745858833511892 0.545258462175486 NA NA prediction 0.401200742672812 Functional Loss - RASSF7 ENSG00000099849 CDS Human protein_coding chr11:562155 chr11:562154 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_12278 0 0 0 0 1 RASSF7 chr11:562079 3'AG 562079 Downstream 76bp 11621 chr1 221057616 221057616 1 + A G GBM 221057617 + 221057597 221057637 41 CAAAAGGACAAGGACAAGGAGGCTGGCGAGAAGCCATCAGG CAAAAGGACAAGGACAAGGGGGCTGGCGAGAAGCCATCAGG < 41bp 0.783590802625133 0.582990624124569 NA NA prediction 0.401200357001128 Functional Loss - HLX ENSG00000136630 CDS Human protein_coding chr1:221057617 chr1:221057616 nonsynonymous SNV 0.783 1 20 hm7G_associated_SNPs_12279 0 0 0 0 1 HLX chr1:221057537 3'AG 221057537 Downstream 80bp 11622 chr16 89289623 89289623 1 + T C STAD 89289624 + 89289604 89289644 41 CAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCT CAGGAGGAATGGACTTTACCGGACCCATCTCAGAGAGACCT < 41bp 0.760561866269823 0.55996330828209 NA NA prediction 0.401197115975468 Functional Loss - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89289624 chr16:89289623 nonsynonymous SNV 0.500 3 20 hm7G_associated_SNPs_12281 0 0 1 0 2 ZNF778 chr16:89289565 3'AG 89289565 Downstream 59bp 11623 chr16 89289623 89289623 1 + T C STAD 89289624 + 89289604 89289644 41 CAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCT CAGGAGGAATGGACTTTACCGGACCCATCTCAGAGAGACCT < 41bp 0.760561866269823 0.55996330828209 NA NA prediction 0.401197115975468 Functional Loss - ZNF778 ENSG00000170100 CDS Human protein_coding chr16:89289624 chr16:89289623 nonsynonymous SNV 0.500 3 20 hm7G_associated_SNPs_12281 0 0 1 0 2 ZNF778 chr16:89289691 5'GT 89289691 Upstream 69bp 11624 chr17 47294011 47294011 1 + A G UCEC 47294012 + 47293992 47294032 41 CTGCGCATGTTGGACCTGCAGGGGGCCGCCCTGCGGCAGGT CTGCGCATGTTGGACCTGCGGGGGGCCGCCCTGCGGCAGGT < 41bp 0.787130130166431 0.586535204799785 NA NA prediction 0.401189850733291 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47294012 chr17:47294011 nonsynonymous SNV 0.672 5 20 hm7G_associated_SNPs_12283 0 0 0 0 2 ABI3 chr17:47294042 5'GT 47294042 Upstream 32bp 11625 chr17 47294011 47294011 1 + A G UCEC 47294012 + 47293992 47294032 41 CTGCGCATGTTGGACCTGCAGGGGGCCGCCCTGCGGCAGGT CTGCGCATGTTGGACCTGCGGGGGGCCGCCCTGCGGCAGGT < 41bp 0.787130130166431 0.586535204799785 NA NA prediction 0.401189850733291 Functional Loss - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47294012 chr17:47294011 nonsynonymous SNV 0.672 5 20 hm7G_associated_SNPs_12283 0 0 0 0 2 ABI3 chr17:47294060 5'GT 47294060 Upstream 50bp 11626 chr1 156593357 156593357 1 + A G ACC 156593358 + 156593338 156593378 41 CCATCTTCCACAAAGCCCAAGGAGACCCAGGTAAGACCCCA CCATCTTCCACAAAGCCCAGGGAGACCCAGGTAAGACCCCA < 41bp 0.792625932413662 0.592034395227125 NA NA prediction 0.401183074373074 Functional Loss - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156593358 chr1:156593357 synonymous SNV . 0 20 hm7G_associated_SNPs_12285 0 0 0 0 2 HAPLN2 chr1:156593259 3'AG 156593259 Downstream 99bp 11627 chr1 156593357 156593357 1 + A G ACC 156593358 + 156593338 156593378 41 CCATCTTCCACAAAGCCCAAGGAGACCCAGGTAAGACCCCA CCATCTTCCACAAAGCCCAGGGAGACCCAGGTAAGACCCCA < 41bp 0.792625932413662 0.592034395227125 NA NA prediction 0.401183074373074 Functional Loss - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156593358 chr1:156593357 synonymous SNV . 0 20 hm7G_associated_SNPs_12285 0 0 0 0 2 HAPLN2 chr1:156593367 5'GT 156593367 Upstream 11bp 11628 chr4 1330759 1330759 1 + T C rs1128427 1330760 + 1330740 1330780 41 TCACCCTCACCCTGCAGGCTGGCCTCTCAGCCATCAAGACA TCACCCTCACCCTGCAGGCCGGCCTCTCAGCCATCAAGACA < 41bp 0.747892812826676 0.547303554905612 NA NA prediction 0.401178515842129 Functional Loss - MAEA ENSG00000090316 CDS Human protein_coding chr4:1330760 chr4:1330759 nonsynonymous SNV 0.762 0 20 hm7G_associated_SNPs_12286 0 0 1 0 1 MAEA chr4:1330782 5'GT 1330782 Upstream 24bp 11629 chr14 67787028 67787028 1 + T C UCEC 67787029 + 67787009 67787049 41 AGGAAGAGACCTATCATCTTGATTGGTCCACAGAACTGTGG AGGAAGAGACCTATCATCTCGATTGGTCCACAGAACTGTGG < 41bp 0.754728092644627 0.554141346085995 NA NA prediction 0.401173493117264 Functional Loss - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67787029 chr14:67787028 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_12287 0 0 1 0 2 MPP5 chr14:67786947 3'AG 67786947 Downstream 82bp 11630 chr14 67787028 67787028 1 + T C UCEC 67787029 + 67787009 67787049 41 AGGAAGAGACCTATCATCTTGATTGGTCCACAGAACTGTGG AGGAAGAGACCTATCATCTCGATTGGTCCACAGAACTGTGG < 41bp 0.754728092644627 0.554141346085995 NA NA prediction 0.401173493117264 Functional Loss - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67787029 chr14:67787028 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_12287 0 0 1 0 2 MPP5 chr14:67787114 5'GT 67787114 Upstream 87bp 11631 chr12 112919967 112919967 1 + T C UCEC 112919968 + 112919948 112919988 41 TCAAAGAAAGCGCCGCTCATGACTATACGCTAAGAGAACTT TCAAAGAAAGCGCCGCTCACGACTATACGCTAAGAGAACTT < 41bp 0.700586688833775 0.488827378952228 NA NA prediction 0.40117337766755 Functional Loss - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112919968 chr12:112919967 synonymous SNV . 0 20 hm7G_associated_SNPs_12288 0 0 0 0 1 PTPN11 chr12:112920009 5'GT 112920009 Upstream 43bp 11632 chr8 146228262 146228262 1 - A C rs7823346 146228261 - 146228241 146228281 41 ATTTCCGGCCCAGGGGGCTTGGCTCCCCGCGGCACGGGATT ATTTCCGGCCCAGGGGGCTGGGCTCCCCGCGGCACGGGATT < 41bp 0.700580047726623 0.384565097177492 NA NA prediction 0.401160095453246 Functional Loss - ZNF252P;ZNF252P-AS1 ENSG00000196922;ENSG00000255559 ncRNA_exonic Human other chr8:146228261 chr8:146228262 . . 0 20 hm7G_associated_SNPs_12289 0 0 1 0 1 ZNF252P;ZNF252P-AS1 chr8:146228203 5'GT 146228203 Upstream 60bp 11633 chr6 53778682 53778682 1 + T C LUSC 53778683 + 53778663 53778703 41 CTGCAGCCTCACTGTGTTCTGTGTACGTGACAACAGACTAA CTGCAGCCTCACTGTGTTCCGTGTACGTGACAACAGACTAA < 41bp 0.700578576427534 0.490494929651178 NA NA prediction 0.401157152855068 Functional Loss - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53778683 chr6:53778682 nonsynonymous SNV 0.795 3 20 hm7G_associated_SNPs_12290 0 0 1 0 2 LRRC1 chr6:53778652 3'AG 53778652 Downstream 31bp 11634 chr6 53778682 53778682 1 + T C LUSC 53778683 + 53778663 53778703 41 CTGCAGCCTCACTGTGTTCTGTGTACGTGACAACAGACTAA CTGCAGCCTCACTGTGTTCCGTGTACGTGACAACAGACTAA < 41bp 0.700578576427534 0.490494929651178 NA NA prediction 0.401157152855068 Functional Loss - LRRC1 ENSG00000137269 CDS Human protein_coding chr6:53778683 chr6:53778682 nonsynonymous SNV 0.795 3 20 hm7G_associated_SNPs_12290 0 0 1 0 2 LRRC1 chr6:53778767 5'GT 53778767 Upstream 86bp 11635 chr2 27465543 27465543 1 + T C COAD 27465544 + 27465524 27465564 41 GTACATTCCCTGGCCTGCCTGCTCACCCAGTATCGTGTCAG GTACATTCCCTGGCCTGCCCGCTCACCCAGTATCGTGTCAG < 41bp 0.729543993043021 0.528967260832364 NA NA prediction 0.401153464421314 Functional Loss - CAD ENSG00000084774 CDS Human protein_coding chr2:27465544 chr2:27465543 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12291 0 0 1 0 1 CAD chr2:27465488 3'AG 27465488 Downstream 56bp 11636 chr4 1808341 1808341 1 + T C PAAD 1808342 + 1808322 1808362 41 CCGTACCCCGGCATCCCTGTGGAGGAGCTCTTCAAGCTGCT CCGTACCCCGGCATCCCTGCGGAGGAGCTCTTCAAGCTGCT < 41bp 0.754460909714273 0.553891310167942 NA NA prediction 0.401139199092663 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808342 chr4:1808341 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_12293 0 0 1 0 2 FGFR3 chr4:1808273 3'AG 1808273 Downstream 69bp 11637 chr4 1808341 1808341 1 + T C PAAD 1808342 + 1808322 1808362 41 CCGTACCCCGGCATCCCTGTGGAGGAGCTCTTCAAGCTGCT CCGTACCCCGGCATCCCTGCGGAGGAGCTCTTCAAGCTGCT < 41bp 0.754460909714273 0.553891310167942 NA NA prediction 0.401139199092663 Functional Loss - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808342 chr4:1808341 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_12293 0 0 1 0 2 FGFR3 chr4:1808410 5'GT 1808410 Upstream 70bp 11638 chr12 112308939 112308939 1 + T C LAML 112308940 + 112308920 112308960 41 TTGCCAAGATTGACCAAGGTGACTTGATGACACCCCAGTTC TTGCCAAGATTGACCAAGGCGACTTGATGACACCCCAGTTC < 41bp 0.758318095566033 0.557751079873632 NA NA prediction 0.401134031384803 Functional Loss - MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112308940 chr12:112308939 synonymous SNV . 0 20 hm7G_associated_SNPs_12294 0 0 1 0 2 MAPKAPK5 chr12:112308889 3'AG 112308889 Downstream 51bp 11639 chr12 112308939 112308939 1 + T C LAML 112308940 + 112308920 112308960 41 TTGCCAAGATTGACCAAGGTGACTTGATGACACCCCAGTTC TTGCCAAGATTGACCAAGGCGACTTGATGACACCCCAGTTC < 41bp 0.758318095566033 0.557751079873632 NA NA prediction 0.401134031384803 Functional Loss - MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112308940 chr12:112308939 synonymous SNV . 0 20 hm7G_associated_SNPs_12294 0 0 1 0 2 MAPKAPK5 chr12:112308984 5'GT 112308984 Upstream 46bp 11640 chr1 2418670 2418670 1 + T C rs373817416 2418671 + 2418651 2418691 41 TCAACCCTGAGCACCACCATGTGCACCAGGACATGACGCAG TCAACCCTGAGCACCACCACGTGCACCAGGACATGACGCAG < 41bp 0.701679906484962 0.501141094763258 NA NA prediction 0.401077623443408 Functional Loss - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2418671 chr1:2418670 synonymous SNV . 0 20 hm7G_associated_SNPs_12298 0 0 0 0 1 PLCH2 chr1:2418612 3'AG 2418612 Downstream 59bp 11641 chr15 64706391 64706391 1 + T C COAD 64706392 + 64706372 64706412 41 GTTCTGGTAAATCCCAACATGTACCAGTCCCCTCCCCAGGT GTTCTGGTAAATCCCAACACGTACCAGTCCCCTCCCCAGGT < 41bp 0.70053838954139 0.497136716971897 NA NA prediction 0.40107677908278 Functional Loss - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64706392 chr15:64706391 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_12299 0 0 0 0 1 TRIP4 chr15:64706410 5'GT 64706410 Upstream 20bp 11642 chr11 66049735 66049735 1 + A G KIRP 66049736 + 66049716 66049756 41 CGCCCCTCCCCCAGATCATAGCCTTTGATGAGCTGCGGACC CGCCCCTCCCCCAGATCATGGCCTTTGATGAGCTGCGGACC < 41bp 0.798849850206356 0.598321973248593 NA NA prediction 0.401055753915526 Functional Loss - CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66049736 chr11:66049735 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12301 0 0 0 0 3 CNIH2 chr11:66049730 3'AG 66049730 Downstream 6bp 11643 chr11 66049735 66049735 1 + A G KIRP 66049736 + 66049716 66049756 41 CGCCCCTCCCCCAGATCATAGCCTTTGATGAGCTGCGGACC CGCCCCTCCCCCAGATCATGGCCTTTGATGAGCTGCGGACC < 41bp 0.798849850206356 0.598321973248593 NA NA prediction 0.401055753915526 Functional Loss - CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66049736 chr11:66049735 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12301 0 0 0 0 3 CNIH2 chr11:66049798 5'GT 66049798 Upstream 64bp 11644 chr11 66049735 66049735 1 + A G KIRP 66049736 + 66049716 66049756 41 CGCCCCTCCCCCAGATCATAGCCTTTGATGAGCTGCGGACC CGCCCCTCCCCCAGATCATGGCCTTTGATGAGCTGCGGACC < 41bp 0.798849850206356 0.598321973248593 NA NA prediction 0.401055753915526 Functional Loss - CNIH2 ENSG00000174871 CDS Human protein_coding chr11:66049736 chr11:66049735 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12301 0 0 0 0 3 CNIH2 chr11:66049824 5'GT 66049824 Upstream 90bp 11645 chr11 130339158 130339158 1 + T C UCEC 130339159 + 130339139 130339179 41 ACAGGCTCTTCCTCACAGGTGGATGGTTCCTGGGCCAAATG ACAGGCTCTTCCTCACAGGCGGATGGTTCCTGGGCCAAATG < 41bp 0.739437098993853 0.53891100917547 NA NA prediction 0.401052179636765 Functional Loss - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130339159 chr11:130339158 nonsynonymous SNV 0.980 1 20 hm7G_associated_SNPs_12302 0 0 0 0 1 ADAMTS15 chr11:130339157 3'AG 130339157 Downstream 2bp 11646 chr3 45559474 45559474 1 + T C rs34459812 45559475 + 45559455 45559495 41 TTATTGAGGCCAGGGCTTCTGGGAAGTCTCCCCAGCCTCAG TTATTGAGGCCAGGGCTTCCGGGAAGTCTCCCCAGCCTCAG < 41bp 0.762241789523106 0.561718284406869 NA NA prediction 0.401047010232474 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45559475 chr3:45559474 synonymous SNV . 0 20 hm7G_associated_SNPs_12305 1 0 1 0 2 LARS2 chr3:45559395 3'AG 45559395 Downstream 80bp 11647 chr3 45559474 45559474 1 + T C rs34459812 45559475 + 45559455 45559495 41 TTATTGAGGCCAGGGCTTCTGGGAAGTCTCCCCAGCCTCAG TTATTGAGGCCAGGGCTTCCGGGAAGTCTCCCCAGCCTCAG < 41bp 0.762241789523106 0.561718284406869 NA NA prediction 0.401047010232474 Functional Loss - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45559475 chr3:45559474 synonymous SNV . 0 20 hm7G_associated_SNPs_12305 1 0 1 0 2 LARS2 chr3:45559564 5'GT 45559564 Upstream 91bp 11648 chr7 128399055 128399055 1 + T C UCEC 128399056 + 128399036 128399076 41 TCACAGCTTTCCTGCACCCTGAGGAGTATGACTACATGAAA TCACAGCTTTCCTGCACCCCGAGGAGTATGACTACATGAAA < 41bp 0.739373910476452 0.538850775611869 NA NA prediction 0.401046269729166 Functional Loss - CALU ENSG00000128595 CDS Human protein_coding chr7:128399056 chr7:128399055 synonymous SNV . 0 20 hm7G_associated_SNPs_12306 0 0 1 0 1 CALU chr7:128399091 5'GT 128399091 Upstream 37bp 11649 chr7 107315391 107315391 1 + T C UCEC 107315392 + 107315372 107315412 41 TCCTTTTCCTTATCGTAGTTGATATTTGGTGGCTTGCAGAT TCCTTTTCCTTATCGTAGTCGATATTTGGTGGCTTGCAGAT < 41bp 0.722504036808653 0.522004365368033 NA NA prediction 0.40099934288124 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107315392 chr7:107315391 nonsynonymous SNV 0.933 4 20 hm7G_associated_SNPs_12308 0 0 0 0 1 SLC26A4 chr7:107315390 3'AG 107315390 Downstream 2bp 11650 chr19 36113590 36113590 1 + A G rs61747965 36113591 + 36113571 36113611 41 CTGGAGAAGCTACTGAAACAGGCACTGGAGCGAATCCCTGA CTGGAGAAGCTACTGAAACGGGCACTGGAGCGAATCCCTGA < 41bp 0.738233581617076 0.537734824908191 NA NA prediction 0.400997513417769 Functional Loss - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36113591 chr19:36113590 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_12311 0 0 1 0 2 HAUS5 chr19:36113503 3'AG 36113503 Downstream 88bp 11651 chr19 36113590 36113590 1 + A G rs61747965 36113591 + 36113571 36113611 41 CTGGAGAAGCTACTGAAACAGGCACTGGAGCGAATCCCTGA CTGGAGAAGCTACTGAAACGGGCACTGGAGCGAATCCCTGA < 41bp 0.738233581617076 0.537734824908191 NA NA prediction 0.400997513417769 Functional Loss - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36113591 chr19:36113590 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_12311 0 0 1 0 2 HAUS5 chr19:36113635 5'GT 36113635 Upstream 46bp 11652 chr6 160500677 160500677 1 + A G BRCA 160500678 + 160500658 160500698 41 CAGTCGGGCCAGAACAAGGAGGCTGTAAGGACGGAGGAGTC CAGTCGGGCCAGAACAAGGGGGCTGTAAGGACGGAGGAGTC < 41bp 0.713298143695303 0.512803214670993 NA NA prediction 0.40098985804862 Functional Loss - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160500678 chr6:160500677 synonymous SNV . 0 20 hm7G_associated_SNPs_12312 0 0 1 0 1 IGF2R chr6:160500612 3'AG 160500612 Downstream 66bp 11653 chr2 197541322 197541322 1 + A G rs561956006 197541323 + 197541303 197541343 41 CAGTGTATCCAGAAAGCACAGGATGCTGAAAAGAGAACAGC CAGTGTATCCAGAAAGCACGGGATGCTGAAAAGAGAACAGC < 41bp 0.709263800034863 0.508787163360486 NA NA prediction 0.400953273348754 Functional Loss - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541323 chr2:197541322 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_12314 0 0 1 1 1 CCDC150 chr2:197541278 3'AG 197541278 Downstream 45bp 11654 chr5 462403 462403 1 + A G LIHC 462404 + 462384 462424 41 TGCAGCGGTTTGCTGGAGGAGGTCTTCCTGGACCTGGAGGT TGCAGCGGTTTGCTGGAGGGGGTCTTCCTGGACCTGGAGGT < 41bp 0.700471427826601 0.484098329417299 NA NA prediction 0.400942855653202 Functional Loss - EXOC3 ENSG00000180104 CDS Human protein_coding chr5:462404 chr5:462403 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12317 0 0 1 0 1 EXOC3 chr5:462422 5'GT 462422 Upstream 20bp 11655 chr6 167590529 167590529 1 + T C UCEC 167590530 + 167590510 167590550 41 TTTCACCTCTGTCAGCTGATGAAGAGACAACGCCCAAATAC TTTCACCTCTGTCAGCTGACGAAGAGACAACGCCCAAATAC < 41bp 0.732230046454678 0.531767431041171 NA NA prediction 0.400925230827013 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167590530 chr6:167590529 synonymous SNV . 0 20 hm7G_associated_SNPs_12318 0 0 0 0 2 TCP10L2 chr6:167590485 3'AG 167590485 Downstream 45bp 11656 chr6 167590529 167590529 1 + T C UCEC 167590530 + 167590510 167590550 41 TTTCACCTCTGTCAGCTGATGAAGAGACAACGCCCAAATAC TTTCACCTCTGTCAGCTGACGAAGAGACAACGCCCAAATAC < 41bp 0.732230046454678 0.531767431041171 NA NA prediction 0.400925230827013 Functional Loss - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167590530 chr6:167590529 synonymous SNV . 0 20 hm7G_associated_SNPs_12318 0 0 0 0 2 TCP10L2 chr6:167590622 5'GT 167590622 Upstream 94bp 11657 chr19 34710756 34710756 1 + T C STAD 34710757 + 34710737 34710777 41 ACAAAACTAAATCCTTCTTTGATAATATTTCTTGTGATGAC ACAAAACTAAATCCTTCTTCGATAATATTTCTTGTGATGAC < 41bp 0.700457361696737 0.496131632745103 NA NA prediction 0.400914723393473 Functional Loss - LSM14A ENSG00000257103 CDS Human protein_coding chr19:34710757 chr19:34710756 synonymous SNV . 0 20 hm7G_associated_SNPs_12319 0 0 1 0 1 LSM14A chr19:34710782 5'GT 34710782 Upstream 27bp 11658 chr9 35852855 35852855 1 + T C STAD 35852856 + 35852836 35852876 41 TGTGACCAGCCAGGCATCGTGGTTTTCTGCATCATGGACTA TGTGACCAGCCAGGCATCGCGGTTTTCTGCATCATGGACTA < 41bp 0.753356634701426 0.552902439947735 NA NA prediction 0.400908389507382 Functional Loss - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35852856 chr9:35852855 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12320 0 0 0 0 1 TMEM8B chr9:35852824 3'AG 35852824 Downstream 32bp 11659 chr15 91452595 91452595 1 + A G rs2106673 91452596 + 91452576 91452616 41 CAATACCGGAAGAAGTCCCAGCTGTTCCGAAGCAACGTCCT CAATACCGGAAGAAGTCCCGGCTGTTCCGAAGCAACGTCCT < 41bp 0.77515806821781 0.574706016500446 NA NA prediction 0.400904103434728 Functional Loss - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91452596 chr15:91452595 nonsynonymous SNV 0.821 0 20 hm7G_associated_SNPs_12321 0 0 1 0 1 MAN2A2 chr15:91452557 3'AG 91452557 Downstream 39bp 11660 chr20 36919758 36919758 1 + A G rs10446011 36919759 + 36919739 36919779 41 CTCCCTGGGCAGACAAGACAGGAGACTGGAAGAAGGGGCCA CTCCCTGGGCAGACAAGACGGGAGACTGGAAGAAGGGGCCA < 41bp 0.726137251739083 0.525690034762527 NA NA prediction 0.400894433953112 Functional Loss - LOC149684;BPI ENSG00000101425 CDS Human protein_coding chr20:36919759 chr20:36919758 synonymous SNV . 0 20 hm7G_associated_SNPs_12322 0 0 0 0 1 LOC149684;BPI chr20:36919751 3'AG 36919751 Downstream 8bp 11661 chr7 152550641 152550641 1 + A G KIRC 152550642 + 152550622 152550662 41 GCTACGCCGTGTGGTTCGGAGGCTCCATGCTGGCCTCGACT GCTACGCCGTGTGGTTCGGGGGCTCCATGCTGGCCTCGACT < 41bp 0.700440385530767 0.482450539819727 NA NA prediction 0.400880771061534 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152550642 chr7:152550641 synonymous SNV . 0 20 hm7G_associated_SNPs_12323 0 0 1 0 2 ACTR3B chr7:152550579 3'AG 152550579 Downstream 63bp 11662 chr7 152550641 152550641 1 + A G KIRC 152550642 + 152550622 152550662 41 GCTACGCCGTGTGGTTCGGAGGCTCCATGCTGGCCTCGACT GCTACGCCGTGTGGTTCGGGGGCTCCATGCTGGCCTCGACT < 41bp 0.700440385530767 0.482450539819727 NA NA prediction 0.400880771061534 Functional Loss - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152550642 chr7:152550641 synonymous SNV . 0 20 hm7G_associated_SNPs_12323 0 0 1 0 2 ACTR3B chr7:152550662 5'GT 152550662 Upstream 22bp 11663 chr7 107334918 107334918 1 + T C STAD 107334919 + 107334899 107334939 41 GGGAAGCTTCTGGAACCCTTGCAGAAGGTATAACCCTGCTT GGGAAGCTTCTGGAACCCTCGCAGAAGGTATAACCCTGCTT < 41bp 0.735561881535671 0.535125510975247 NA NA prediction 0.400872741120847 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107334919 chr7:107334918 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12324 0 0 0 0 2 SLC26A4 chr7:107334848 3'AG 107334848 Downstream 71bp 11664 chr7 107334918 107334918 1 + T C STAD 107334919 + 107334899 107334939 41 GGGAAGCTTCTGGAACCCTTGCAGAAGGTATAACCCTGCTT GGGAAGCTTCTGGAACCCTCGCAGAAGGTATAACCCTGCTT < 41bp 0.735561881535671 0.535125510975247 NA NA prediction 0.400872741120847 Functional Loss - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107334919 chr7:107334918 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12324 0 0 0 0 2 SLC26A4 chr7:107334925 5'GT 107334925 Upstream 8bp 11665 chr1 117620568 117620568 1 + T C UCEC 117620569 + 117620549 117620589 41 CAAGATCACGTTCATGCAGTGTGGAAAATCACAAGTGAAGC CAAGATCACGTTCATGCAGCGTGGAAAATCACAAGTGAAGC < 41bp 0.700430578994669 0.496471782643048 NA NA prediction 0.400861157989337 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117620569 chr1:117620568 nonsynonymous SNV 0.096 1 20 hm7G_associated_SNPs_12325 0 0 1 0 2 TTF2 chr1:117620538 3'AG 117620538 Downstream 31bp 11666 chr1 117620568 117620568 1 + T C UCEC 117620569 + 117620549 117620589 41 CAAGATCACGTTCATGCAGTGTGGAAAATCACAAGTGAAGC CAAGATCACGTTCATGCAGCGTGGAAAATCACAAGTGAAGC < 41bp 0.700430578994669 0.496471782643048 NA NA prediction 0.400861157989337 Functional Loss - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117620569 chr1:117620568 nonsynonymous SNV 0.096 1 20 hm7G_associated_SNPs_12325 0 0 1 0 2 TTF2 chr1:117620665 5'GT 117620665 Upstream 98bp 11667 chr12 106857291 106857291 1 + T C UCEC 106857292 + 106857272 106857312 41 GACTCATATATTGAAAAAGTGATGATATCTTCAAATGCTGA GACTCATATATTGAAAAAGCGATGATATCTTCAAATGCTGA < 41bp 0.723630909149608 0.523202685520068 NA NA prediction 0.40085644725908 Functional Loss - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106857292 chr12:106857291 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12326 0 0 0 0 1 POLR3B chr12:106857256 3'AG 106857256 Downstream 36bp 11668 chr19 34884908 34884908 1 + T C UCEC 34884909 + 34884889 34884929 41 ACATCAACTGCTTTGGGTGTGAGACACACGCCATGCTGCCC ACATCAACTGCTTTGGGTGCGAGACACACGCCATGCTGCCC < 41bp 0.746797099508308 0.546371121961526 NA NA prediction 0.400851955093564 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34884909 chr19:34884908 synonymous SNV . 0 20 hm7G_associated_SNPs_12327 0 0 1 0 2 GPI chr19:34884819 3'AG 34884819 Downstream 90bp 11669 chr19 34884908 34884908 1 + T C UCEC 34884909 + 34884889 34884929 41 ACATCAACTGCTTTGGGTGTGAGACACACGCCATGCTGCCC ACATCAACTGCTTTGGGTGCGAGACACACGCCATGCTGCCC < 41bp 0.746797099508308 0.546371121961526 NA NA prediction 0.400851955093564 Functional Loss - GPI ENSG00000105220 CDS Human protein_coding chr19:34884909 chr19:34884908 synonymous SNV . 0 20 hm7G_associated_SNPs_12327 0 0 1 0 2 GPI chr19:34884971 5'GT 34884971 Upstream 64bp 11670 chr17 79671332 79671332 1 + T C rs112518314 79671333 + 79671313 79671353 41 GAGCAGCGGCCATCAGAGGTGTGAGGCCCTCGCTGGTGCAC GAGCAGCGGCCATCAGAGGCGTGAGGCCCTCGCTGGTGCAC < 41bp 0.706850411248952 0.506431768458307 NA NA prediction 0.400837285581291 Functional Loss - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671333 chr17:79671332 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_12329 1 0 1 0 1 MRPL12 chr17:79671274 3'AG 79671274 Downstream 59bp 11671 chr3 52557091 52557091 1 + T C LUAD 52557092 + 52557072 52557112 41 GGGTGACGGGATCAGCACGTGCAATGGGAAGCTGCTGGATG GGGTGACGGGATCAGCACGCGCAATGGGAAGCTGCTGGATG < 41bp 0.712935227742304 0.512521901149477 NA NA prediction 0.400826653185655 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52557092 chr3:52557091 nonsynonymous SNV 0.520 5 20 hm7G_associated_SNPs_12330 0 0 0 0 2 STAB1 chr3:52557041 3'AG 52557041 Downstream 51bp 11672 chr3 52557091 52557091 1 + T C LUAD 52557092 + 52557072 52557112 41 GGGTGACGGGATCAGCACGTGCAATGGGAAGCTGCTGGATG GGGTGACGGGATCAGCACGCGCAATGGGAAGCTGCTGGATG < 41bp 0.712935227742304 0.512521901149477 NA NA prediction 0.400826653185655 Functional Loss - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52557092 chr3:52557091 nonsynonymous SNV 0.520 5 20 hm7G_associated_SNPs_12330 0 0 0 0 2 STAB1 chr3:52557150 5'GT 52557150 Upstream 60bp 11673 chr12 8050922 8050922 1 + T C LUAD 8050923 + 8050903 8050943 41 TGGCAGAAAAACAACTGGCTGAAGAATAGCAATGGTGTGAC TGGCAGAAAAACAACTGGCCGAAGAATAGCAATGGTGTGAC < 41bp 0.713980945595282 0.513568580187925 NA NA prediction 0.400824730814715 Functional Loss - SLC2A14;SLC2A3 ENSG00000176654 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr12:8050923 chr12:8050922 . . 0 20 hm7G_associated_SNPs_12331 0 0 0 0 2 SLC2A14;SLC2A3 chr12:8050861 3'AG 8050861 Downstream 62bp 11674 chr12 8050922 8050922 1 + T C LUAD 8050923 + 8050903 8050943 41 TGGCAGAAAAACAACTGGCTGAAGAATAGCAATGGTGTGAC TGGCAGAAAAACAACTGGCCGAAGAATAGCAATGGTGTGAC < 41bp 0.713980945595282 0.513568580187925 NA NA prediction 0.400824730814715 Functional Loss - SLC2A14;SLC2A3 ENSG00000176654 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr12:8050923 chr12:8050922 . . 0 20 hm7G_associated_SNPs_12331 0 0 0 0 2 SLC2A14;SLC2A3 chr12:8050947 5'GT 8050947 Upstream 26bp 11675 chr17 26519219 26519219 1 + T C LIHC 26519220 + 26519200 26519240 41 GCATCAACCCTCAGTCTGCTGCTTTTAAGAGCTTTATTAGG GCATCAACCCTCAGTCTGCCGCTTTTAAGAGCTTTATTAGG < 41bp 0.723221811674382 0.522823967468721 NA NA prediction 0.400795688411322 Functional Loss - NLK ENSG00000087095 CDS Human protein_coding chr17:26519220 chr17:26519219 synonymous SNV . 0 20 hm7G_associated_SNPs_12334 0 0 1 10 2 NLK chr17:26519146 3'AG 26519146 Downstream 74bp 11676 chr17 26519219 26519219 1 + T C LIHC 26519220 + 26519200 26519240 41 GCATCAACCCTCAGTCTGCTGCTTTTAAGAGCTTTATTAGG GCATCAACCCTCAGTCTGCCGCTTTTAAGAGCTTTATTAGG < 41bp 0.723221811674382 0.522823967468721 NA NA prediction 0.400795688411322 Functional Loss - NLK ENSG00000087095 CDS Human protein_coding chr17:26519220 chr17:26519219 synonymous SNV . 0 20 hm7G_associated_SNPs_12334 0 0 1 10 2 NLK chr17:26519239 5'GT 26519239 Upstream 21bp 11677 chr18 43796512 43796512 1 + T C UCEC 43796513 + 43796493 43796533 41 GCACGAGCTCATCAGATGATGATGAAGAGGTTTCAGGGAGC GCACGAGCTCATCAGATGACGATGAAGAGGTTTCAGGGAGC < 41bp 0.704081852933118 0.503685575075894 NA NA prediction 0.400792555714448 Functional Loss - C18orf25 ENSG00000152242 CDS Human protein_coding chr18:43796513 chr18:43796512 synonymous SNV . 0 20 hm7G_associated_SNPs_12336 0 0 1 0 1 C18orf25 chr18:43796561 5'GT 43796561 Upstream 50bp 11678 chr11 14882756 14882756 1 + T C rs113803419 14882757 + 14882737 14882777 41 TTTTTCCAAAATAGGCAAATGATGTAAATAGTAATGGCATA TTTTTCCAAAATAGGCAAACGATGTAAATAGTAATGGCATA < 41bp 0.717620694961899 0.517233412830212 NA NA prediction 0.400774564263376 Functional Loss - PDE3B ENSG00000152270 CDS Human protein_coding chr11:14882757 chr11:14882756 synonymous SNV . 0 20 hm7G_associated_SNPs_12337 0 0 1 0 1 PDE3B chr11:14882751 3'AG 14882751 Downstream 6bp 11679 chr17 54517721 54517721 1 + T C SKCM 54517722 + 54517702 54517742 41 TCCGAAGACTTTTCTCCTTTGGCTGGAGAAATCATCATGGA TCCGAAGACTTTTCTCCTTCGGCTGGAGAAATCATCATGGA < 41bp 0.734445591854965 0.534058859666889 NA NA prediction 0.400773464376152 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54517722 chr17:54517721 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12338 0 0 0 0 2 ANKFN1 chr17:54517688 3'AG 54517688 Downstream 34bp 11680 chr17 54517721 54517721 1 + T C SKCM 54517722 + 54517702 54517742 41 TCCGAAGACTTTTCTCCTTTGGCTGGAGAAATCATCATGGA TCCGAAGACTTTTCTCCTTCGGCTGGAGAAATCATCATGGA < 41bp 0.734445591854965 0.534058859666889 NA NA prediction 0.400773464376152 Functional Loss - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54517722 chr17:54517721 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12338 0 0 0 0 2 ANKFN1 chr17:54517785 5'GT 54517785 Upstream 65bp 11681 chr17 1639511 1639511 1 + A G UCEC 1639512 + 1639492 1639532 41 GGGGACATTCTGCAGATCAAGGTGACGGGCCGGGTCTCCCT GGGGACATTCTGCAGATCAGGGTGACGGGCCGGGTCTCCCT < 41bp 0.762292660533366 0.561908035060793 NA NA prediction 0.400769250945146 Functional Loss - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1639512 chr17:1639511 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_12339 0 0 1 0 1 WDR81 chr17:1639512 5'GT 1639512 Upstream 2bp 11682 chr9 127089635 127089635 1 + T C LAML 127089636 + 127089616 127089656 41 GACATCAAGCCTGCCAACGTGTTCATCACAGCCACGGGCGT GACATCAAGCCTGCCAACGCGTTCATCACAGCCACGGGCGT < 41bp 0.730677556285499 0.530300117903744 NA NA prediction 0.40075487676351 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127089636 chr9:127089635 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12341 0 0 1 0 2 NEK6 chr9:127089617 3'AG 127089617 Downstream 19bp 11683 chr9 127089635 127089635 1 + T C LAML 127089636 + 127089616 127089656 41 GACATCAAGCCTGCCAACGTGTTCATCACAGCCACGGGCGT GACATCAAGCCTGCCAACGCGTTCATCACAGCCACGGGCGT < 41bp 0.730677556285499 0.530300117903744 NA NA prediction 0.40075487676351 Functional Loss - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127089636 chr9:127089635 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12341 0 0 1 0 2 NEK6 chr9:127089724 5'GT 127089724 Upstream 90bp 11684 chr16 22144300 22144300 1 + A G LIHC 22144301 + 22144281 22144321 41 TGTCTCTTCTACGTGGGCGAGCCAAAGATGGACACCACACC TGTCTCTTCTACGTGGGCGGGCCAAAGATGGACACCACACC < 41bp 0.756425214981282 0.556049363089641 NA NA prediction 0.400751703783283 Functional Loss - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22144301 chr16:22144300 nonsynonymous SNV 0.488 0 20 hm7G_associated_SNPs_12342 0 0 0 0 1 VWA3A chr16:22144221 3'AG 22144221 Downstream 80bp 11685 chr4 8603164 8603164 1 + T C STAD 8603165 + 8603145 8603185 41 CTGGCCCTACTTCCTTGACTGCCACCGCTACTTCACGAGAG CTGGCCCTACTTCCTTGACCGCCACCGCTACTTCACGAGAG < 41bp 0.743648159749847 0.543275779889142 NA NA prediction 0.400744759721409 Functional Loss - CPZ ENSG00000109625 CDS Human protein_coding chr4:8603165 chr4:8603164 nonsynonymous SNV 0.125 4 20 hm7G_associated_SNPs_12343 0 0 0 0 1 CPZ chr4:8603224 5'GT 8603224 Upstream 61bp 11686 chr2 220337675 220337675 1 + T C LUSC 220337676 + 220337656 220337696 41 TCGGACCAGTGGACGGCACTGGTCACAGGCCTGCGGGAGCC TCGGACCAGTGGACGGCACCGGTCACAGGCCTGCGGGAGCC < 41bp 0.74548691487249 0.545116185852199 NA NA prediction 0.400741458040582 Functional Loss - SPEG ENSG00000072195 CDS Human protein_coding chr2:220337676 chr2:220337675 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_12344 0 0 0 0 1 SPEG chr2:220337612 3'AG 220337612 Downstream 64bp 11687 chr15 93467605 93467605 1 + T C LGG 93467606 + 93467586 93467626 41 CAGGCAGTCAGTCGGAAAGTGAGCAGGGAAGTGATCCAGGA CAGGCAGTCAGTCGGAAAGCGAGCAGGGAAGTGATCCAGGA < 41bp 0.739768861996137 0.539409202269712 NA NA prediction 0.40071931945285 Functional Loss - CHD2 ENSG00000173575 CDS Human protein_coding chr15:93467606 chr15:93467605 synonymous SNV . 0 20 hm7G_associated_SNPs_12346 0 0 1 0 1 CHD2 chr15:93467551 3'AG 93467551 Downstream 55bp 11688 chr22 39126646 39126646 1 + A G KIRC 39126647 + 39126627 39126667 41 GCAGTGGAGGCCGGCGACGAGGGGGCCAGCGCCACAAGGTG GCAGTGGAGGCCGGCGACGGGGGGGCCAGCGCCACAAGGTG < 41bp 0.749600150711278 0.549245728797916 NA NA prediction 0.400708843826723 Functional Loss - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39126647 chr22:39126646 synonymous SNV . 0 20 hm7G_associated_SNPs_12349 0 0 1 0 1 GTPBP1 chr22:39126617 3'AG 39126617 Downstream 30bp 11689 chr19 39965244 39965244 1 + A G STAD 39965245 + 39965225 39965265 41 ACCCACACACGCCAGGCTCAGGCATCGAGCAGAACTCCAGC ACCCACACACGCCAGGCTCGGGCATCGAGCAGAACTCCAGC < 41bp 0.730353102448267 0.530005511306792 NA NA prediction 0.40069518228295 Functional Loss - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39965245 chr19:39965244 synonymous SNV . 0 20 hm7G_associated_SNPs_12350 0 0 1 0 1 SUPT5H chr19:39965155 3'AG 39965155 Downstream 90bp 11690 chr11 64109474 64109474 1 + T C HNSC 64109475 + 64109455 64109495 41 CTGACCTACAGCGGCTGGCTGAACTGCTGCTGGAGCGAGAA CTGACCTACAGCGGCTGGCCGAACTGCTGCTGGAGCGAGAA < 41bp 0.72781775425172 0.527471587546725 NA NA prediction 0.40069233340999 Functional Loss - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64109475 chr11:64109474 synonymous SNV . 0 20 hm7G_associated_SNPs_12351 0 0 0 0 1 CCDC88B chr11:64109466 3'AG 64109466 Downstream 9bp 11691 chr16 66995285 66995285 1 + A G READ 66995286 + 66995266 66995306 41 TCCTGGCATGCCCTGCCACAGCCACTGGTAAGACACACCTG TCCTGGCATGCCCTGCCACGGCCACTGGTAAGACACACCTG < 41bp 0.700341477124294 0.474989389258563 NA NA prediction 0.400682954248588 Functional Loss - CES3 ENSG00000172828 CDS Human protein_coding chr16:66995286 chr16:66995285 synonymous SNV . 0 20 hm7G_associated_SNPs_12352 0 0 0 0 1 CES3 chr16:66995292 5'GT 66995292 Upstream 8bp 11692 chr6 395868 395868 1 + A G LUSC 395869 + 395849 395889 41 GCCAAGCAGCTCACCCTGGAGGACCCGCAGATGTCCATGAG GCCAAGCAGCTCACCCTGGGGGACCCGCAGATGTCCATGAG < 41bp 0.760704123148108 0.560373738126194 NA NA prediction 0.400660770043828 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:395869 chr6:395868 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_12356 0 0 0 0 2 IRF4 chr6:395847 3'AG 395847 Downstream 22bp 11693 chr6 395868 395868 1 + A G LUSC 395869 + 395849 395889 41 GCCAAGCAGCTCACCCTGGAGGACCCGCAGATGTCCATGAG GCCAAGCAGCTCACCCTGGGGGACCCGCAGATGTCCATGAG < 41bp 0.760704123148108 0.560373738126194 NA NA prediction 0.400660770043828 Functional Loss - IRF4 ENSG00000137265 CDS Human protein_coding chr6:395869 chr6:395868 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_12356 0 0 0 0 2 IRF4 chr6:395935 5'GT 395935 Upstream 68bp 11694 chr1 203802958 203802958 1 + T C LAML 203802959 + 203802939 203802979 41 TTGAGTCTTACTGAGAGACTGGGGAAACGAAAATTTTCAGC TTGAGTCTTACTGAGAGACCGGGGAAACGAAAATTTTCAGC < 41bp 0.710429569704368 0.510104072554377 NA NA prediction 0.400650994299983 Functional Loss - ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203802959 chr1:203802958 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_12358 0 0 1 0 2 ZC3H11A chr1:203802919 3'AG 203802919 Downstream 40bp 11695 chr1 203802958 203802958 1 + T C LAML 203802959 + 203802939 203802979 41 TTGAGTCTTACTGAGAGACTGGGGAAACGAAAATTTTCAGC TTGAGTCTTACTGAGAGACCGGGGAAACGAAAATTTTCAGC < 41bp 0.710429569704368 0.510104072554377 NA NA prediction 0.400650994299983 Functional Loss - ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203802959 chr1:203802958 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_12358 0 0 1 0 2 ZC3H11A chr1:203802981 5'GT 203802981 Upstream 24bp 11696 chr13 46092961 46092961 1 + T C LGG 46092962 + 46092942 46092982 41 TTAGGCTGAATAGCAACAATGCCTTGATAGAGTTCTTGTTG TTAGGCTGAATAGCAACAACGCCTTGATAGAGTTCTTGTTG < 41bp 0.706549889267722 0.506225396715795 NA NA prediction 0.400648985103853 Functional Loss - COG3 ENSG00000136152 CDS Human protein_coding chr13:46092962 chr13:46092961 synonymous SNV . 0 20 hm7G_associated_SNPs_12359 0 0 1 0 2 COG3 chr13:46092897 3'AG 46092897 Downstream 65bp 11697 chr13 46092961 46092961 1 + T C LGG 46092962 + 46092942 46092982 41 TTAGGCTGAATAGCAACAATGCCTTGATAGAGTTCTTGTTG TTAGGCTGAATAGCAACAACGCCTTGATAGAGTTCTTGTTG < 41bp 0.706549889267722 0.506225396715795 NA NA prediction 0.400648985103853 Functional Loss - COG3 ENSG00000136152 CDS Human protein_coding chr13:46092962 chr13:46092961 synonymous SNV . 0 20 hm7G_associated_SNPs_12359 0 0 1 0 2 COG3 chr13:46092985 5'GT 46092985 Upstream 25bp 11698 chr15 78805484 78805484 1 + T C COAD 78805485 + 78805465 78805505 41 TTAGCAAACCCACTTTCAGTGAGGAACAAGCCTCTGCGTTA TTAGCAAACCCACTTTCAGCGAGGAACAAGCCTCTGCGTTA < 41bp 0.721010285099129 0.52068606950829 NA NA prediction 0.400648431181678 Functional Loss - HYKK ENSG00000188266 CDS Human protein_coding chr15:78805485 chr15:78805484 synonymous SNV . 0 20 hm7G_associated_SNPs_12360 0 0 0 0 1 HYKK chr15:78805426 3'AG 78805426 Downstream 59bp 11699 chr5 176004494 176004494 1 + A G GBM 176004495 + 176004475 176004515 41 GTGGGCTCAGCCTCCGTTCAGGTGCTGGTGAGAGTATCCGC GTGGGCTCAGCCTCCGTTCGGGTGCTGGTGAGAGTATCCGC < 41bp 0.783255958662693 0.582931850001412 NA NA prediction 0.400648217322563 Functional Loss - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176004495 chr5:176004494 nonsynonymous SNV 0.461 1 20 hm7G_associated_SNPs_12361 0 0 1 0 2 CDHR2 chr5:176004400 3'AG 176004400 Downstream 95bp 11700 chr5 176004494 176004494 1 + A G GBM 176004495 + 176004475 176004515 41 GTGGGCTCAGCCTCCGTTCAGGTGCTGGTGAGAGTATCCGC GTGGGCTCAGCCTCCGTTCGGGTGCTGGTGAGAGTATCCGC < 41bp 0.783255958662693 0.582931850001412 NA NA prediction 0.400648217322563 Functional Loss - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176004495 chr5:176004494 nonsynonymous SNV 0.461 1 20 hm7G_associated_SNPs_12361 0 0 1 0 2 CDHR2 chr5:176004555 5'GT 176004555 Upstream 62bp 11701 chr16 20432615 20432615 1 + A G LGG 20432616 + 20432596 20432636 41 CACAACTGCATGAGGACAAAGAGTCGAGACCCGCTGGCCAT CACAACTGCATGAGGACAAGGAGTCGAGACCCGCTGGCCAT < 41bp 0.737659116657436 0.537335810937196 NA NA prediction 0.400646611440479 Functional Loss - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432616 chr16:20432615 nonsynonymous SNV 0.876 0 20 hm7G_associated_SNPs_12363 0 0 0 0 1 ACSM5 chr16:20432580 3'AG 20432580 Downstream 36bp 11702 chrX 153524297 153524297 1 + A G UCEC 153524298 + 153524278 153524318 41 GGTGTTGCAAGATATGGCCAGCCGCTTGCGAATCCATTCCA GGTGTTGCAAGATATGGCCGGCCGCTTGCGAATCCATTCCA < 41bp 0.757121636712123 0.556810770031602 NA NA prediction 0.400621733361043 Functional Loss - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153524298 chrX:153524297 nonsynonymous SNV 0.981 1 20 hm7G_associated_SNPs_12364 0 0 0 0 1 TKTL1 chrX:153524346 5'GT 153524346 Upstream 50bp 11703 chr17 48741125 48741125 1 + T C UCEC 48741126 + 48741106 48741146 41 CTGATGTTCCTGTGCTCCATGATGCAGTCGCTGATCTTACA CTGATGTTCCTGTGCTCCACGATGCAGTCGCTGATCTTACA < 41bp 0.754848862199373 0.554540905535396 NA NA prediction 0.400615913327954 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48741126 chr17:48741125 nonsynonymous SNV 0.684 1 20 hm7G_associated_SNPs_12365 0 0 0 0 2 ABCC3 chr17:48741042 3'AG 48741042 Downstream 84bp 11704 chr17 48741125 48741125 1 + T C UCEC 48741126 + 48741106 48741146 41 CTGATGTTCCTGTGCTCCATGATGCAGTCGCTGATCTTACA CTGATGTTCCTGTGCTCCACGATGCAGTCGCTGATCTTACA < 41bp 0.754848862199373 0.554540905535396 NA NA prediction 0.400615913327954 Functional Loss - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48741126 chr17:48741125 nonsynonymous SNV 0.684 1 20 hm7G_associated_SNPs_12365 0 0 0 0 2 ABCC3 chr17:48741219 5'GT 48741219 Upstream 95bp 11705 chr3 5255177 5255177 1 + T C rs142859843 5255178 + 5255158 5255198 41 TGCACAGGCCGAAACCTCATGAGTTAAAAGTCATCAACTCC TGCACAGGCCGAAACCTCACGAGTTAAAAGTCATCAACTCC < 41bp 0.734017380172931 0.533712767334922 NA NA prediction 0.400609225676017 Functional Loss - EDEM1 ENSG00000134109 CDS Human protein_coding chr3:5255178 chr3:5255177 synonymous SNV . 0 20 hm7G_associated_SNPs_12366 0 0 1 0 1 EDEM1 chr3:5255207 5'GT 5255207 Upstream 31bp 11706 chr5 5186221 5186221 1 + T C OV 5186222 + 5186202 5186242 41 GCCAGATGAGTATAAGTCTTGCTTACGGCATAAGCGCTCTC GCCAGATGAGTATAAGTCTCGCTTACGGCATAAGCGCTCTC < 41bp 0.748975036425915 0.548671692269945 NA NA prediction 0.40060668831194 Functional Loss - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5186222 chr5:5186221 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_12367 0 0 0 0 1 ADAMTS16 chr5:5186165 3'AG 5186165 Downstream 57bp 11707 chr12 53516999 53516999 1 + A G GBM 53517000 + 53516980 53517020 41 TACTCTTCCTTGTCATTGGAGGTGAGCTGGTCTCTGTGCCA TACTCTTCCTTGTCATTGGGGGTGAGCTGGTCTCTGTGCCA < 41bp 0.719480939116938 0.519177621310305 NA NA prediction 0.400606635613266 Functional Loss - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53517000 chr12:53516999 synonymous SNV . 0 20 hm7G_associated_SNPs_12368 0 0 1 1 1 SOAT2 chr12:53517000 5'GT 53517000 Upstream 2bp 11708 chr4 60024 60024 1 + T C LUAD 60025 + 60005 60045 41 CCTGCAATTTGAAGATACATGAGACAGCAGCCAAACCCCCA CCTGCAATTTGAAGATACACGAGACAGCAGCCAAACCCCCA < 41bp 0.706012631737397 0.505713199554344 NA NA prediction 0.400598864366106 Functional Loss - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60025 chr4:60024 synonymous SNV . 0 20 hm7G_associated_SNPs_12369 0 0 1 0 2 ZNF595;ZNF718 chr4:59951 3'AG 59951 Downstream 74bp 11709 chr4 60024 60024 1 + T C LUAD 60025 + 60005 60045 41 CCTGCAATTTGAAGATACATGAGACAGCAGCCAAACCCCCA CCTGCAATTTGAAGATACACGAGACAGCAGCCAAACCCCCA < 41bp 0.706012631737397 0.505713199554344 NA NA prediction 0.400598864366106 Functional Loss - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:60025 chr4:60024 synonymous SNV . 0 20 hm7G_associated_SNPs_12369 0 0 1 0 2 ZNF595;ZNF718 chr4:60046 5'GT 60046 Upstream 23bp 11710 chr2 173782571 173782571 1 + T C BLCA 173782572 + 173782552 173782592 41 GACTTCTGGCTCCTCCTTATGGTGTTATGGAAACGGGCTCT GACTTCTGGCTCCTCCTTACGGTGTTATGGAAACGGGCTCT < 41bp 0.712591570523165 0.512292920457695 NA NA prediction 0.400597300130941 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173782572 chr2:173782571 synonymous SNV . 0 20 hm7G_associated_SNPs_12370 0 0 0 0 2 RAPGEF4 chr2:173782530 3'AG 173782530 Downstream 42bp 11711 chr2 173782571 173782571 1 + T C BLCA 173782572 + 173782552 173782592 41 GACTTCTGGCTCCTCCTTATGGTGTTATGGAAACGGGCTCT GACTTCTGGCTCCTCCTTACGGTGTTATGGAAACGGGCTCT < 41bp 0.712591570523165 0.512292920457695 NA NA prediction 0.400597300130941 Functional Loss - RAPGEF4 ENSG00000091428 CDS Human protein_coding chr2:173782572 chr2:173782571 synonymous SNV . 0 20 hm7G_associated_SNPs_12370 0 0 0 0 2 RAPGEF4 chr2:173782602 5'GT 173782602 Upstream 32bp 11712 chr19 40131125 40131125 1 + A G rs566519329 40131126 + 40131106 40131146 41 GCCCTCAGCAATGACCCAGAGCTGCGGGTGGAATTCTACAC GCCCTCAGCAATGACCCAGGGCTGCGGGTGGAATTCTACAC < 41bp 0.709812568201037 0.50951966120966 NA NA prediction 0.400585813982754 Functional Loss - LOC100129935 ENSG00000268153 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:40131126 chr19:40131125 . . 0 20 hm7G_associated_SNPs_12372 0 0 0 2 1 LOC100129935 chr19:40131114 3'AG 40131114 Downstream 12bp 11713 chr19 17611182 17611182 1 + T C UCEC 17611183 + 17611163 17611203 41 CAATGGAGCTGCTGCGGGATGCCCAGGGCCTCTGCATCCCC CAATGGAGCTGCTGCGGGACGCCCAGGGCCTCTGCATCCCC < 41bp 0.700287773354444 0.493286746622648 NA NA prediction 0.400575546708889 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17611183 chr19:17611182 synonymous SNV . 0 20 hm7G_associated_SNPs_12374 0 0 1 0 2 SLC27A1 chr19:17611087 3'AG 17611087 Downstream 96bp 11714 chr19 17611182 17611182 1 + T C UCEC 17611183 + 17611163 17611203 41 CAATGGAGCTGCTGCGGGATGCCCAGGGCCTCTGCATCCCC CAATGGAGCTGCTGCGGGACGCCCAGGGCCTCTGCATCCCC < 41bp 0.700287773354444 0.493286746622648 NA NA prediction 0.400575546708889 Functional Loss - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17611183 chr19:17611182 synonymous SNV . 0 20 hm7G_associated_SNPs_12374 0 0 1 0 2 SLC27A1 chr19:17611213 5'GT 17611213 Upstream 32bp 11715 chr1 179399642 179399642 1 + T C STAD 179399643 + 179399623 179399663 41 CAAAAATGGAGAAACTTAGTGAATAAACTTAAACAAGAGGT CAAAAATGGAGAAACTTAGCGAATAAACTTAAACAAGAGGT < 41bp 0.700286840976141 0.494700264586849 NA NA prediction 0.400573681952281 Functional Loss - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179399643 chr1:179399642 nonsynonymous SNV 0.918 0 20 hm7G_associated_SNPs_12376 0 0 0 0 2 AXDND1 chr1:179399587 3'AG 179399587 Downstream 56bp 11716 chr1 179399642 179399642 1 + T C STAD 179399643 + 179399623 179399663 41 CAAAAATGGAGAAACTTAGTGAATAAACTTAAACAAGAGGT CAAAAATGGAGAAACTTAGCGAATAAACTTAAACAAGAGGT < 41bp 0.700286840976141 0.494700264586849 NA NA prediction 0.400573681952281 Functional Loss - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179399643 chr1:179399642 nonsynonymous SNV 0.918 0 20 hm7G_associated_SNPs_12376 0 0 0 0 2 AXDND1 chr1:179399741 5'GT 179399741 Upstream 100bp 11717 chrX 153670473 153670473 1 + T C STAD 153670474 + 153670454 153670494 41 CCAGACATCTACGTGTGCATGATCTCCTATGCACACAACGT CCAGACATCTACGTGTGCACGATCTCCTATGCACACAACGT < 41bp 0.710388021709506 0.510114697844041 NA NA prediction 0.400546647730929 Functional Loss - GDI1 ENSG00000203879 CDS Human protein_coding chrX:153670474 chrX:153670473 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12377 0 0 1 0 1 GDI1 chrX:153670458 3'AG 153670458 Downstream 16bp 11718 chr11 60886752 60886752 1 + T C BRCA 60886753 + 60886733 60886773 41 AGTCTGGCGGCCAGCACTGTGCCGGCGTGGTGGAGTTCTAC AGTCTGGCGGCCAGCACTGCGCCGGCGTGGTGGAGTTCTAC < 41bp 0.741198866357301 0.540927147078968 NA NA prediction 0.400543438556667 Functional Loss - CD5 ENSG00000110448 CDS Human protein_coding chr11:60886753 chr11:60886752 synonymous SNV . 0 20 hm7G_associated_SNPs_12380 0 0 0 0 1 CD5 chr11:60886706 3'AG 60886706 Downstream 47bp 11719 chr2 233127979 233127979 1 + T C rs72998118 233127980 + 233127960 233128000 41 CCAAACTTAGCTACGAGCATGCACAGAGCATGATTGAAAGC CCAAACTTAGCTACGAGCACGCACAGAGCATGATTGAAAGC < 41bp 0.700271061732165 0.494305678941987 NA NA prediction 0.40054212346433 Functional Loss - DIS3L2 ENSG00000144535 CDS Human protein_coding chr2:233127980 chr2:233127979 synonymous SNV . 0 20 hm7G_associated_SNPs_12381 1 0 1 0 1 DIS3L2 chr2:233127917 3'AG 233127917 Downstream 63bp 11720 chr10 105203056 105203056 1 + T G OV 105203057 + 105203037 105203077 41 CTCAAAGTCTTTCTCCACCTGGCTGACATCTACGCCAAGTC CTCAAAGTCTTTCTCCACCGGGCTGACATCTACGCCAAGTC < 41bp 0.700269754970653 0.351129307474426 NA NA prediction 0.400539509941306 Functional Loss - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203057 chr10:105203056 nonsynonymous SNV 0.817 4 20 hm7G_associated_SNPs_12382 0 0 1 0 1 PDCD11 chr10:105203090 5'GT 105203090 Upstream 35bp 11721 chr7 36462243 36462243 1 + T C STAD 36462244 + 36462224 36462264 41 TTGCGTTGTTTTACATAGCTGGGAAGAGAACACTTTTGATT TTGCGTTGTTTTACATAGCCGGGAAGAGAACACTTTTGATT < 41bp 0.722561974174993 0.522300402936414 NA NA prediction 0.400523142477159 Functional Loss - ANLN ENSG00000011426 CDS Human protein_coding chr7:36462244 chr7:36462243 synonymous SNV . 0 20 hm7G_associated_SNPs_12383 0 0 1 0 1 ANLN chr7:36462242 3'AG 36462242 Downstream 2bp 11722 chr8 104343622 104343622 1 + T C COAD 104343623 + 104343603 104343643 41 CTGGCACAGAGCAACAATTTGCAGGTCCCCAGTTCTTCAGA CTGGCACAGAGCAACAATTCGCAGGTCCCCAGTTCTTCAGA < 41bp 0.712059965103817 0.511801533217791 NA NA prediction 0.400516863772051 Functional Loss - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104343623 chr8:104343622 nonsynonymous SNV 0.728 0 20 hm7G_associated_SNPs_12386 0 0 1 0 1 FZD6 chr8:104343569 3'AG 104343569 Downstream 54bp 11723 chr11 108709220 108709220 1 + T G rs144033715 108709221 + 108709201 108709241 41 AGAAAAAAATGACCAAAGTTGCAGAAGCAAAAAAAGTAATG AGAAAAAAATGACCAAAGTGGCAGAAGCAAAAAAAGTAATG < 41bp 0.700255666441138 0.382072415485611 NA NA prediction 0.400511332882276 Functional Loss - DDX10 ENSG00000178105 CDS Human protein_coding chr11:108709221 chr11:108709220 synonymous SNV . 0 20 hm7G_associated_SNPs_12388 0 0 0 0 2 DDX10 chr11:108709173 3'AG 108709173 Downstream 48bp 11724 chr11 108709220 108709220 1 + T G rs144033715 108709221 + 108709201 108709241 41 AGAAAAAAATGACCAAAGTTGCAGAAGCAAAAAAAGTAATG AGAAAAAAATGACCAAAGTGGCAGAAGCAAAAAAAGTAATG < 41bp 0.700255666441138 0.382072415485611 NA NA prediction 0.400511332882276 Functional Loss - DDX10 ENSG00000178105 CDS Human protein_coding chr11:108709221 chr11:108709220 synonymous SNV . 0 20 hm7G_associated_SNPs_12388 0 0 0 0 2 DDX10 chr11:108709292 5'GT 108709292 Upstream 73bp 11725 chr3 178937422 178937422 1 + T C HNSC 178937423 + 178937403 178937443 41 GGCTATGGAACTTCTGGACTGTAATTACCCAGATCCTATGG GGCTATGGAACTTCTGGACCGTAATTACCCAGATCCTATGG < 41bp 0.70366813863544 0.503418411768552 NA NA prediction 0.400499453733776 Functional Loss - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178937423 chr3:178937422 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12389 0 0 0 0 1 PIK3CA chr3:178937359 3'AG 178937359 Downstream 64bp 11726 chr3 195456549 195456549 1 + T C rs201857816 195456550 + 195456530 195456570 41 GGTTTCCTCCTCCTGCGGCTGAGTGTGGCTTCCCCGGAAGA GGTTTCCTCCTCCTGCGGCCGAGTGTGGCTTCCCCGGAAGA < 41bp 0.757813461173374 0.557564914081672 NA NA prediction 0.400497094183404 Functional Loss - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195456550 chr3:195456549 nonsynonymous SNV 0.763 3 20 hm7G_associated_SNPs_12391 0 0 0 0 2 MUC20 chr3:195456519 3'AG 195456519 Downstream 31bp 11727 chr3 195456549 195456549 1 + T C rs201857816 195456550 + 195456530 195456570 41 GGTTTCCTCCTCCTGCGGCTGAGTGTGGCTTCCCCGGAAGA GGTTTCCTCCTCCTGCGGCCGAGTGTGGCTTCCCCGGAAGA < 41bp 0.757813461173374 0.557564914081672 NA NA prediction 0.400497094183404 Functional Loss - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195456550 chr3:195456549 nonsynonymous SNV 0.763 3 20 hm7G_associated_SNPs_12391 0 0 0 0 2 MUC20 chr3:195456610 5'GT 195456610 Upstream 62bp 11728 chr16 89253964 89253964 1 + A G UCEC 89253965 + 89253945 89253985 41 CCCGAGTTCACCAGGGATGAGGTGCTGCTGCTGTCCCTCCC CCCGAGTTCACCAGGGATGGGGTGCTGCTGCTGTCCCTCCC < 41bp 0.769818884834717 0.56957473185769 NA NA prediction 0.400488305954053 Functional Loss - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89253965 chr16:89253964 nonsynonymous SNV 0.258 1 20 hm7G_associated_SNPs_12392 0 0 0 0 1 CDH15 chr16:89253965 5'GT 89253965 Upstream 2bp 11729 chr7 31614243 31614243 1 + T C KIRC 31614244 + 31614224 31614264 41 GATGAGCCAGACATCTGCATGCAAATCCCAGCCAGATTCCT GATGAGCCAGACATCTGCACGCAAATCCCAGCCAGATTCCT < 41bp 0.700243155569434 0.479287563057598 NA NA prediction 0.400486311138867 Functional Loss - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31614244 chr7:31614243 nonsynonymous SNV 0.932 0 20 hm7G_associated_SNPs_12393 0 0 0 0 1 CCDC129 chr7:31614154 3'AG 31614154 Downstream 90bp 11730 chr1 227077805 227077805 1 + A G COAD 227077806 + 227077786 227077826 41 ACTGCCCAGGAGAGAAATGAGCCCATATTCCCTGCCCTGAT ACTGCCCAGGAGAGAAATGGGCCCATATTCCCTGCCCTGAT < 41bp 0.732357664656192 0.532125529066849 NA NA prediction 0.400464271178686 Functional Loss - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227077806 chr1:227077805 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12394 0 0 0 0 2 PSEN2 chr1:227077736 3'AG 227077736 Downstream 70bp 11731 chr1 227077805 227077805 1 + A G COAD 227077806 + 227077786 227077826 41 ACTGCCCAGGAGAGAAATGAGCCCATATTCCCTGCCCTGAT ACTGCCCAGGAGAGAAATGGGCCCATATTCCCTGCCCTGAT < 41bp 0.732357664656192 0.532125529066849 NA NA prediction 0.400464271178686 Functional Loss - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227077806 chr1:227077805 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12394 0 0 0 0 2 PSEN2 chr1:227077834 5'GT 227077834 Upstream 30bp 11732 chr3 50232213 50232213 1 + A G COAD 50232214 + 50232194 50232234 41 GCAGGACCCAACACCTACGAGGACGCCGGCAACTACATCAA GCAGGACCCAACACCTACGGGGACGCCGGCAACTACATCAA < 41bp 0.797262052553355 0.597030295974985 NA NA prediction 0.400463513156741 Functional Loss - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50232214 chr3:50232213 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_12395 0 0 0 0 1 GNAT1 chr3:50232198 3'AG 50232198 Downstream 16bp 11733 chr11 71849923 71849923 1 + T C COAD 71849924 + 71849904 71849944 41 CAGGAAGTGTTCCTCTGGATGACCTACCTGGGGCAGAGGAG CAGGAAGTGTTCCTCTGGACGACCTACCTGGGGCAGAGGAG < 41bp 0.731121677813656 0.530892216789462 NA NA prediction 0.400458922048388 Functional Loss - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71849924 chr11:71849923 synonymous SNV . 0 20 hm7G_associated_SNPs_12397 0 0 0 0 1 FOLR3 chr11:71849879 3'AG 71849879 Downstream 45bp 11734 chr12 125558513 125558513 1 + T C COAD 125558514 + 125558494 125558534 41 GTGGAATTGTCTTCTCACGTGTGTATGATGAGGTAAGTAGA GTGGAATTGTCTTCTCACGCGTGTATGATGAGGTAAGTAGA < 41bp 0.718844521463202 0.518622206177171 NA NA prediction 0.400444630572061 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125558514 chr12:125558513 synonymous SNV . 0 20 hm7G_associated_SNPs_12398 0 0 1 0 2 AACS chr12:125558422 3'AG 125558422 Downstream 92bp 11735 chr12 125558513 125558513 1 + T C COAD 125558514 + 125558494 125558534 41 GTGGAATTGTCTTCTCACGTGTGTATGATGAGGTAAGTAGA GTGGAATTGTCTTCTCACGCGTGTATGATGAGGTAAGTAGA < 41bp 0.718844521463202 0.518622206177171 NA NA prediction 0.400444630572061 Functional Loss - AACS ENSG00000081760 CDS Human protein_coding chr12:125558514 chr12:125558513 synonymous SNV . 0 20 hm7G_associated_SNPs_12398 0 0 1 0 2 AACS chr12:125558525 5'GT 125558525 Upstream 13bp 11736 chr16 57413588 57413588 1 + A G KIRP 57413589 + 57413569 57413609 41 TGCAACATCACGTGCAGCAAGATGACATCAAAGATACCTGT TGCAACATCACGTGCAGCAGGATGACATCAAAGATACCTGT < 41bp 0.723165586661026 0.52295946076819 NA NA prediction 0.400412251785671 Functional Loss - CX3CL1 ENSG00000006210 CDS Human protein_coding chr16:57413589 chr16:57413588 nonsynonymous SNV 0.035 0 20 hm7G_associated_SNPs_12399 0 0 0 0 2 CX3CL1 chr16:57413546 3'AG 57413546 Downstream 43bp 11737 chr16 57413588 57413588 1 + A G KIRP 57413589 + 57413569 57413609 41 TGCAACATCACGTGCAGCAAGATGACATCAAAGATACCTGT TGCAACATCACGTGCAGCAGGATGACATCAAAGATACCTGT < 41bp 0.723165586661026 0.52295946076819 NA NA prediction 0.400412251785671 Functional Loss - CX3CL1 ENSG00000006210 CDS Human protein_coding chr16:57413589 chr16:57413588 nonsynonymous SNV 0.035 0 20 hm7G_associated_SNPs_12399 0 0 0 0 2 CX3CL1 chr16:57413666 5'GT 57413666 Upstream 79bp 11738 chr19 47884241 47884241 1 + T C COAD 47884242 + 47884222 47884262 41 TGACTTCCTCACCTACAACTGCCTCACGGTAAGCATGAACC TGACTTCCTCACCTACAACCGCCTCACGGTAAGCATGAACC < 41bp 0.734147443143479 0.533942384382058 NA NA prediction 0.400410117522841 Functional Loss - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47884242 chr19:47884241 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12400 0 0 1 0 1 DHX34 chr19:47884249 5'GT 47884249 Upstream 9bp 11739 chrX 70517769 70517769 1 + A G UCEC 70517770 + 70517750 70517790 41 CGACAGCAGGAAGGATTCAAGGGAACCTTCCCTGATGCGGT CGACAGCAGGAAGGATTCAGGGGAACCTTCCCTGATGCGGT < 41bp 0.700200290064473 0.499376632590358 NA NA prediction 0.400400580128945 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70517770 chrX:70517769 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12402 0 0 1 0 2 NONO chrX:70517686 3'AG 70517686 Downstream 84bp 11740 chrX 70517769 70517769 1 + A G UCEC 70517770 + 70517750 70517790 41 CGACAGCAGGAAGGATTCAAGGGAACCTTCCCTGATGCGGT CGACAGCAGGAAGGATTCAGGGGAACCTTCCCTGATGCGGT < 41bp 0.700200290064473 0.499376632590358 NA NA prediction 0.400400580128945 Functional Loss - NONO ENSG00000147140 CDS Human protein_coding chrX:70517770 chrX:70517769 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12402 0 0 1 0 2 NONO chrX:70517788 5'GT 70517788 Upstream 20bp 11741 chr12 57884035 57884035 1 + A G LUAD 57884036 + 57884016 57884056 41 TTCCAGACACTGAGTACCCAGGAACCATGTCAGCGAGCTGC TTCCAGACACTGAGTACCCGGGAACCATGTCAGCGAGCTGC < 41bp 0.758499961489324 0.558305839362141 NA NA prediction 0.400388244254366 Functional Loss - MARS ENSG00000166986 CDS Human protein_coding chr12:57884036 chr12:57884035 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_12404 0 0 1 2 1 MARS chr12:57883990 3'AG 57883990 Downstream 46bp 11742 chr11 66026110 66026110 1 + T C UCEC 66026111 + 66026091 66026131 41 AGGAGAAGCTGAGCCAGGATGAGATCGTGCTGGGCACCAAG AGGAGAAGCTGAGCCAGGACGAGATCGTGCTGGGCACCAAG < 41bp 0.704425132602496 0.504236085857637 NA NA prediction 0.400378093489719 Functional Loss - KLC2 ENSG00000174996 CDS Human protein_coding chr11:66026111 chr11:66026110 synonymous SNV . 0 20 hm7G_associated_SNPs_12405 0 0 1 0 1 KLC2 chr11:66026055 3'AG 66026055 Downstream 56bp 11743 chr20 55206661 55206661 1 + T C UCEC 55206662 + 55206642 55206682 41 CGCCGCTCCGACCTGCTGCTGCCCCACGCACACGCCCTGGA CGCCGCTCCGACCTGCTGCCGCCCCACGCACACGCCCTGGA < 41bp 0.7400948658131 0.539906372698647 NA NA prediction 0.400376986228905 Functional Loss - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55206662 chr20:55206661 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_12406 0 0 0 0 1 TFAP2C chr20:55206746 5'GT 55206746 Upstream 86bp 11744 chr19 56485145 56485145 1 + T C LIHC 56485146 + 56485126 56485166 41 TGAAGGGGCCAAGCATATTTGGAATGCCCTGCCACACCTGA TGAAGGGGCCAAGCATATTCGGAATGCCCTGCCACACCTGA < 41bp 0.743743537621209 0.543564342016213 NA NA prediction 0.40035839120999 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56485146 chr19:56485145 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_12407 0 0 0 0 2 NLRP8 chr19:56485075 3'AG 56485075 Downstream 71bp 11745 chr19 56485145 56485145 1 + T C LIHC 56485146 + 56485126 56485166 41 TGAAGGGGCCAAGCATATTTGGAATGCCCTGCCACACCTGA TGAAGGGGCCAAGCATATTCGGAATGCCCTGCCACACCTGA < 41bp 0.743743537621209 0.543564342016213 NA NA prediction 0.40035839120999 Functional Loss - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56485146 chr19:56485145 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_12407 0 0 0 0 2 NLRP8 chr19:56485188 5'GT 56485188 Upstream 44bp 11746 chr12 53454271 53454271 1 + T C rs145448651 53454272 + 53454252 53454292 41 CCCGAGATGCCCCATGCAGTGCTTCGTCAGAGTTGTCTGGT CCCGAGATGCCCCATGCAGCGCTTCGTCAGAGTTGTCTGGT < 41bp 0.70017329402096 0.498973024935104 NA NA prediction 0.400346588041919 Functional Loss - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53454272 chr12:53454271 synonymous SNV . 0 20 hm7G_associated_SNPs_12409 0 0 0 0 1 TNS2 chr12:53454339 5'GT 53454339 Upstream 69bp 11747 chr1 158061339 158061339 1 + A G BLCA 158061340 + 158061320 158061360 41 CAGCCATCATCCAGCTGGAAGAGCGAGGTGACTGGTAGTGC CAGCCATCATCCAGCTGGAGGAGCGAGGTGACTGGTAGTGC < 41bp 0.741350403961804 0.541183786701346 NA NA prediction 0.400333234520916 Functional Loss - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158061340 chr1:158061339 synonymous SNV . 0 20 hm7G_associated_SNPs_12410 0 0 0 0 1 KIRREL chr1:158061346 5'GT 158061346 Upstream 8bp 11748 chr6 64410295 64410295 1 + T C STAD 64410296 + 64410276 64410316 41 CCTGATCATCTTATCAGAATGAGTCCAGAAGAACTAGCTTC CCTGATCATCTTATCAGAACGAGTCCAGAAGAACTAGCTTC < 41bp 0.745193367610916 0.545030129238082 NA NA prediction 0.400326476745668 Functional Loss - PHF3 ENSG00000118482 CDS Human protein_coding chr6:64410296 chr6:64410295 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12413 0 0 1 0 2 PHF3 chr6:64410240 3'AG 64410240 Downstream 56bp 11749 chr6 64410295 64410295 1 + T C STAD 64410296 + 64410276 64410316 41 CCTGATCATCTTATCAGAATGAGTCCAGAAGAACTAGCTTC CCTGATCATCTTATCAGAACGAGTCCAGAAGAACTAGCTTC < 41bp 0.745193367610916 0.545030129238082 NA NA prediction 0.400326476745668 Functional Loss - PHF3 ENSG00000118482 CDS Human protein_coding chr6:64410296 chr6:64410295 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12413 0 0 1 0 2 PHF3 chr6:64410356 5'GT 64410356 Upstream 62bp 11750 chr5 75932923 75932923 1 + T C LUSC 75932924 + 75932904 75932944 41 ATGACTACTATTACAACACTGATTCAAAAGAGAGTTCCTGG ATGACTACTATTACAACACCGATTCAAAAGAGAGTTCCTGG < 41bp 0.739754394098812 0.539598348393298 NA NA prediction 0.400312091411029 Functional Loss - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75932924 chr5:75932923 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_12414 0 0 0 0 1 IQGAP2 chr5:75933001 5'GT 75933001 Upstream 79bp 11751 chr3 114018501 114018501 1 + T C LIHC 114018502 + 114018482 114018522 41 GGAGCCATGGCCGCGACGCTGGTGGTCATCTGCACAGCAGT GGAGCCATGGCCGCGACGCCGGTGGTCATCTGCACAGCAGT < 41bp 0.721763780268732 0.521608157413191 NA NA prediction 0.400311245711081 Functional Loss - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114018502 chr3:114018501 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_12415 0 0 0 0 2 TIGIT chr3:114018444 3'AG 114018444 Downstream 58bp 11752 chr3 114018501 114018501 1 + T C LIHC 114018502 + 114018482 114018522 41 GGAGCCATGGCCGCGACGCTGGTGGTCATCTGCACAGCAGT GGAGCCATGGCCGCGACGCCGGTGGTCATCTGCACAGCAGT < 41bp 0.721763780268732 0.521608157413191 NA NA prediction 0.400311245711081 Functional Loss - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114018502 chr3:114018501 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_12415 0 0 0 0 2 TIGIT chr3:114018550 5'GT 114018550 Upstream 50bp 11753 chr14 90450896 90450896 1 + T C ACC 90450897 + 90450877 90450917 41 TATACCCACGAATTGCTGATGGAACCCACAAATCTGGAGAG TATACCCACGAATTGCTGACGGAACCCACAAATCTGGAGAG < 41bp 0.750636218063631 0.550481333341552 NA NA prediction 0.400309769444157 Functional Loss - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90450897 chr14:90450896 synonymous SNV . 0 20 hm7G_associated_SNPs_12416 0 0 1 0 1 TDP1 chr14:90450860 3'AG 90450860 Downstream 37bp 11754 chr3 47050062 47050062 1 + T C SKCM 47050063 + 47050043 47050083 41 GGGAAGTTGCGGGCTTCACTGCCCCTGGCAGAGCAGCCTAC GGGAAGTTGCGGGCTTCACCGCCCCTGGCAGAGCAGCCTAC < 41bp 0.719186113036323 0.51903206322765 NA NA prediction 0.400308099617346 Functional Loss - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47050063 chr3:47050062 nonsynonymous SNV 0.858 0 20 hm7G_associated_SNPs_12417 0 0 0 0 2 NBEAL2 chr3:47050010 3'AG 47050010 Downstream 53bp 11755 chr3 47050062 47050062 1 + T C SKCM 47050063 + 47050043 47050083 41 GGGAAGTTGCGGGCTTCACTGCCCCTGGCAGAGCAGCCTAC GGGAAGTTGCGGGCTTCACCGCCCCTGGCAGAGCAGCCTAC < 41bp 0.719186113036323 0.51903206322765 NA NA prediction 0.400308099617346 Functional Loss - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47050063 chr3:47050062 nonsynonymous SNV 0.858 0 20 hm7G_associated_SNPs_12417 0 0 0 0 2 NBEAL2 chr3:47050158 5'GT 47050158 Upstream 97bp 11756 chrX 128692617 128692617 1 + T C UCEC 128692618 + 128692598 128692638 41 TGTGTCTTTCAGGGCTTCTTGGATTTGAAGACAATTTTTCT TGTGTCTTTCAGGGCTTCTCGGATTTGAAGACAATTTTTCT < 41bp 0.733505086524004 0.533353288856204 NA NA prediction 0.400303595335599 Functional Loss - OCRL ENSG00000122126 CDS Human protein_coding chrX:128692618 chrX:128692617 synonymous SNV . 0 20 hm7G_associated_SNPs_12418 0 0 0 0 1 OCRL chrX:128692610 3'AG 128692610 Downstream 8bp 11757 chr10 105752396 105752396 1 + T C STAD 105752397 + 105752377 105752417 41 GGTGGAGCAGTAGATGCTGTGATGCTTGGTAAATACCTTTT GGTGGAGCAGTAGATGCTGCGATGCTTGGTAAATACCTTTT < 41bp 0.714358417278413 0.514207018900606 NA NA prediction 0.400302796755614 Functional Loss - SLK ENSG00000065613 CDS Human protein_coding chr10:105752397 chr10:105752396 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12419 0 0 1 0 2 SLK chr10:105752356 3'AG 105752356 Downstream 41bp 11758 chr10 105752396 105752396 1 + T C STAD 105752397 + 105752377 105752417 41 GGTGGAGCAGTAGATGCTGTGATGCTTGGTAAATACCTTTT GGTGGAGCAGTAGATGCTGCGATGCTTGGTAAATACCTTTT < 41bp 0.714358417278413 0.514207018900606 NA NA prediction 0.400302796755614 Functional Loss - SLK ENSG00000065613 CDS Human protein_coding chr10:105752397 chr10:105752396 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12419 0 0 1 0 2 SLK chr10:105752404 5'GT 105752404 Upstream 9bp 11759 chr17 57290179 57290179 1 + T C rs141884957 57290180 + 57290160 57290200 41 ATCCTGCTCCTGCTAAAAATGAATCCTCTCCTGCTCCTCCA ATCCTGCTCCTGCTAAAAACGAATCCTCTCCTGCTCCTCCA < 41bp 0.735718097475231 0.535569491470943 NA NA prediction 0.400297212008576 Functional Loss - SMG8 ENSG00000167447 CDS Human protein_coding chr17:57290180 chr17:57290179 synonymous SNV . 0 20 hm7G_associated_SNPs_12420 0 0 1 0 1 SMG8 chr17:57290090 3'AG 57290090 Downstream 90bp 11760 chrX 69420307 69420307 1 + T C LUSC 69420308 + 69420288 69420328 41 CGAGAATATGTGATGTCAATGGGTGAGTATAAGAAATAATT CGAGAATATGTGATGTCAACGGGTGAGTATAAGAAATAATT < 41bp 0.706455724355598 0.506309878333568 NA NA prediction 0.400291692044059 Functional Loss - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69420308 chrX:69420307 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_12421 0 0 0 0 1 DGAT2L6 chrX:69420309 5'GT 69420309 Upstream 3bp 11761 chr6 2779546 2779546 1 + A G OV 2779547 + 2779527 2779567 41 AGACACCCTGGCTTACCTCAGTGACGGTGACGCCCGAGCTG AGACACCCTGGCTTACCTCGGTGACGGTGACGCCCGAGCTG < 41bp 0.700135898311926 0.488078946361045 NA NA prediction 0.400271796623853 Functional Loss - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2779547 chr6:2779546 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_12424 0 0 1 0 1 WRNIP1 chr6:2779497 3'AG 2779497 Downstream 50bp 11762 chr5 110446535 110446535 1 + T C UCEC 110446536 + 110446516 110446556 41 GTGGATGGATTAAACCAGTTGACAGTTACAACTGGTAGTGA GTGGATGGATTAAACCAGTCGACAGTTACAACTGGTAGTGA < 41bp 0.700134319841451 0.492217739074099 NA NA prediction 0.400268639682902 Functional Loss - WDR36 ENSG00000134987 CDS Human protein_coding chr5:110446536 chr5:110446535 nonsynonymous SNV 0.907 3 20 hm7G_associated_SNPs_12425 0 0 1 0 1 WDR36 chr5:110446487 3'AG 110446487 Downstream 49bp 11763 chr19 51630306 51630306 1 + T C UCEC 51630307 + 51630287 51630327 41 TATCCACAGTCTTGGGAAATGGCTCATCTCTGTCACTCCCA TATCCACAGTCTTGGGAAACGGCTCATCTCTGTCACTCCCA < 41bp 0.73511285106595 0.534989543458939 NA NA prediction 0.400246615214023 Functional Loss - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51630307 chr19:51630306 synonymous SNV . 0 20 hm7G_associated_SNPs_12426 0 0 0 0 1 SIGLEC9 chr19:51630287 3'AG 51630287 Downstream 20bp 11764 chr3 142467150 142467150 1 + T C LUSC 142467151 + 142467131 142467171 41 ATTCAACAACTATGGATGTTGCACCTGTCATTTTAGCTGCT ATTCAACAACTATGGATGTCGCACCTGTCATTTTAGCTGCT < 41bp 0.739592711884114 0.539472959743067 NA NA prediction 0.400239504282094 Functional Loss - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142467151 chr3:142467150 synonymous SNV . 0 20 hm7G_associated_SNPs_12428 0 0 1 0 1 TRPC1 chr3:142467100 3'AG 142467100 Downstream 51bp 11765 chr20 42169425 42169425 1 + T C BRCA 42169426 + 42169406 42169446 41 TTCAGACCCTGACAGGTTGTGAGGACCAAGCACGCCTCTTC TTCAGACCCTGACAGGTTGCGAGGACCAAGCACGCCTCTTC < 41bp 0.742444940205378 0.542330657619295 NA NA prediction 0.400228565172167 Functional Loss - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42169426 chr20:42169425 synonymous SNV . 0 20 hm7G_associated_SNPs_12429 0 0 1 0 2 L3MBTL1 chr20:42169393 3'AG 42169393 Downstream 33bp 11766 chr20 42169425 42169425 1 + T C BRCA 42169426 + 42169406 42169446 41 TTCAGACCCTGACAGGTTGTGAGGACCAAGCACGCCTCTTC TTCAGACCCTGACAGGTTGCGAGGACCAAGCACGCCTCTTC < 41bp 0.742444940205378 0.542330657619295 NA NA prediction 0.400228565172167 Functional Loss - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42169426 chr20:42169425 synonymous SNV . 0 20 hm7G_associated_SNPs_12429 0 0 1 0 2 L3MBTL1 chr20:42169455 5'GT 42169455 Upstream 31bp 11767 chr20 36946873 36946873 1 + T G UCEC 36946874 + 36946854 36946894 41 CAACCTTATTTCCAGACTCTGCCAGGTGAGGGCTGGATGAA CAACCTTATTTCCAGACTCGGCCAGGTGAGGGCTGGATGAA < 41bp 0.903464661871755 0.703370550430237 NA NA prediction 0.400188222883035 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36946874 chr20:36946873 nonsynonymous SNV 0.036 2 20 hm7G_associated_SNPs_12431 0 0 0 0 2 BPI chr20:36946815 3'AG 36946815 Downstream 59bp 11768 chr20 36946873 36946873 1 + T G UCEC 36946874 + 36946854 36946894 41 CAACCTTATTTCCAGACTCTGCCAGGTGAGGGCTGGATGAA CAACCTTATTTCCAGACTCGGCCAGGTGAGGGCTGGATGAA < 41bp 0.903464661871755 0.703370550430237 NA NA prediction 0.400188222883035 Functional Loss - BPI ENSG00000101425 CDS Human protein_coding chr20:36946874 chr20:36946873 nonsynonymous SNV 0.036 2 20 hm7G_associated_SNPs_12431 0 0 0 0 2 BPI chr20:36946878 5'GT 36946878 Upstream 6bp 11769 chr9 80869847 80869847 1 + T C LUAD 80869848 + 80869828 80869868 41 AGAGTGTTCATGAAGTGCCTGAGAAAACTAGTATAGAACAA AGAGTGTTCATGAAGTGCCCGAGAAAACTAGTATAGAACAA < 41bp 0.729190499053306 0.529102308634984 NA NA prediction 0.400176380836645 Functional Loss - CEP78 ENSG00000148019 CDS Human protein_coding chr9:80869848 chr9:80869847 synonymous SNV . 0 20 hm7G_associated_SNPs_12432 0 0 1 0 2 CEP78 chr9:80869752 3'AG 80869752 Downstream 96bp 11770 chr9 80869847 80869847 1 + T C LUAD 80869848 + 80869828 80869868 41 AGAGTGTTCATGAAGTGCCTGAGAAAACTAGTATAGAACAA AGAGTGTTCATGAAGTGCCCGAGAAAACTAGTATAGAACAA < 41bp 0.729190499053306 0.529102308634984 NA NA prediction 0.400176380836645 Functional Loss - CEP78 ENSG00000148019 CDS Human protein_coding chr9:80869848 chr9:80869847 synonymous SNV . 0 20 hm7G_associated_SNPs_12432 0 0 1 0 2 CEP78 chr9:80869880 5'GT 80869880 Upstream 34bp 11771 chr3 73006420 73006420 1 + T C HNSC 73006421 + 73006401 73006441 41 CTGGCTTGGGAGGACATGTTGTACCCTCTGTACCAGAAGTA CTGGCTTGGGAGGACATGTCGTACCCTCTGTACCAGAAGTA < 41bp 0.700087096850173 0.484255390783004 NA NA prediction 0.400174193700345 Functional Loss - GXYLT2 ENSG00000172986 CDS Human protein_coding chr3:73006421 chr3:73006420 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_12433 0 0 1 0 2 GXYLT2 chr3:73006380 3'AG 73006380 Downstream 41bp 11772 chr3 73006420 73006420 1 + T C HNSC 73006421 + 73006401 73006441 41 CTGGCTTGGGAGGACATGTTGTACCCTCTGTACCAGAAGTA CTGGCTTGGGAGGACATGTCGTACCCTCTGTACCAGAAGTA < 41bp 0.700087096850173 0.484255390783004 NA NA prediction 0.400174193700345 Functional Loss - GXYLT2 ENSG00000172986 CDS Human protein_coding chr3:73006421 chr3:73006420 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_12433 0 0 1 0 2 GXYLT2 chr3:73006503 5'GT 73006503 Upstream 84bp 11773 chr11 63283084 63283084 1 + A G UCEC 63283085 + 63283065 63283105 41 CCATGCTCCTGTGACACTCAGGGCCTCCTTCGCAGACAGAA CCATGCTCCTGTGACACTCGGGGCCTCCTTCGCAGACAGAA < 41bp 0.700086199265689 0.47386807027917 NA NA prediction 0.400172398531378 Functional Loss - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63283085 chr11:63283084 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_12434 0 0 0 0 1 LGALS12 chr11:63283035 3'AG 63283035 Downstream 50bp 11774 chr15 31229420 31229420 1 + T C rs2955795 31229421 + 31229401 31229441 41 CTGAAGTAGAAGTCTGCCATGTGGTTGCAGTTGGAGCTAAG CTGAAGTAGAAGTCTGCCACGTGGTTGCAGTTGGAGCTAAG < 41bp 0.74798644152366 0.547902780143899 NA NA prediction 0.400167322759523 Functional Loss - FAN1 ENSG00000198690 CDS Human protein_coding chr15:31229421 chr15:31229420 synonymous SNV . 0 20 hm7G_associated_SNPs_12435 1 0 1 0 2 FAN1 chr15:31229322 3'AG 31229322 Downstream 99bp 11775 chr15 31229420 31229420 1 + T C rs2955795 31229421 + 31229401 31229441 41 CTGAAGTAGAAGTCTGCCATGTGGTTGCAGTTGGAGCTAAG CTGAAGTAGAAGTCTGCCACGTGGTTGCAGTTGGAGCTAAG < 41bp 0.74798644152366 0.547902780143899 NA NA prediction 0.400167322759523 Functional Loss - FAN1 ENSG00000198690 CDS Human protein_coding chr15:31229421 chr15:31229420 synonymous SNV . 0 20 hm7G_associated_SNPs_12435 1 0 1 0 2 FAN1 chr15:31229462 5'GT 31229462 Upstream 43bp 11776 chr2 135170579 135170579 1 + T C CESC 135170580 + 135170560 135170600 41 TTCATTGGCAAGCCAACTCTGAGAGAGGTAAGCATCTATCA TTCATTGGCAAGCCAACTCCGAGAGAGGTAAGCATCTATCA < 41bp 0.700075261359549 0.499892238338434 NA NA prediction 0.400150522719098 Functional Loss - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135170580 chr2:135170579 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12438 0 0 1 0 1 MGAT5 chr2:135170586 5'GT 135170586 Upstream 8bp 11777 chr11 9456484 9456484 1 + T C UCEC 9456485 + 9456465 9456505 41 TTTTTTATTAATACAGATATGATGCCCCTCCTTCATAATTA TTTTTTATTAATACAGATACGATGCCCCTCCTTCATAATTA < 41bp 0.700073710212373 0.495555368490174 NA NA prediction 0.400147420424746 Functional Loss - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456485 chr11:9456484 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_12439 0 0 1 0 2 IPO7 chr11:9456481 3'AG 9456481 Downstream 4bp 11778 chr11 9456484 9456484 1 + T C UCEC 9456485 + 9456465 9456505 41 TTTTTTATTAATACAGATATGATGCCCCTCCTTCATAATTA TTTTTTATTAATACAGATACGATGCCCCTCCTTCATAATTA < 41bp 0.700073710212373 0.495555368490174 NA NA prediction 0.400147420424746 Functional Loss - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9456485 chr11:9456484 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_12439 0 0 1 0 2 IPO7 chr11:9456578 5'GT 9456578 Upstream 95bp 11779 chr4 129782948 129782948 1 + T C UCEC 129782949 + 129782929 129782969 41 CCATCTTAGCAGAGAATGATGAAGTCAAGTTCAAGTCCTAT CCATCTTAGCAGAGAATGACGAAGTCAAGTTCAAGTCCTAT < 41bp 0.700071037043982 0.488870791096223 NA NA prediction 0.400142074087965 Functional Loss - JADE1 ENSG00000077684 CDS Human protein_coding chr4:129782949 chr4:129782948 synonymous SNV . 0 20 hm7G_associated_SNPs_12440 0 0 1 0 1 JADE1 chr4:129782859 3'AG 129782859 Downstream 90bp 11780 chr6 43098295 43098295 1 + A G rs56350986 43098296 + 43098276 43098316 41 CACCCCAGGACGTGGTAGTAGCGAGGTATGAGGAGGCCATG CACCCCAGGACGTGGTAGTGGCGAGGTATGAGGAGGCCATG < 41bp 0.762315188070285 0.562247417952713 NA NA prediction 0.400135540235144 Functional Loss - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43098296 chr6:43098295 synonymous SNV . 0 20 hm7G_associated_SNPs_12441 0 0 1 0 1 PTK7 chr6:43098249 3'AG 43098249 Downstream 47bp 11781 chr14 24459567 24459567 1 + T C rs184019002 24459568 + 24459548 24459588 41 CGGGAGCGGCTGGTGGCCATGGTGAGCTGCAGGGAAATGGG CGGGAGCGGCTGGTGGCCACGGTGAGCTGCAGGGAAATGGG < 41bp 0.733045131814424 0.532978598874771 NA NA prediction 0.400133065879306 Functional Loss - DHRS4L2 ENSG00000187630 CDS Human protein_coding chr14:24459568 chr14:24459567 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_12442 0 0 1 0 1 DHRS4L2 chr14:24459568 5'GT 24459568 Upstream 2bp 11782 chr13 113512204 113512204 1 + A G STAD 113512205 + 113512185 113512225 41 CGATGGTGCAAATGATGTCAGCATGATTCTGGAAGCGCACG CGATGGTGCAAATGATGTCGGCATGATTCTGGAAGCGCACG < 41bp 0.729823542385491 0.529757318502525 NA NA prediction 0.400132447765932 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113512205 chr13:113512204 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_12443 0 0 1 0 2 ATP11A chr13:113512132 3'AG 113512132 Downstream 73bp 11783 chr13 113512204 113512204 1 + A G STAD 113512205 + 113512185 113512225 41 CGATGGTGCAAATGATGTCAGCATGATTCTGGAAGCGCACG CGATGGTGCAAATGATGTCGGCATGATTCTGGAAGCGCACG < 41bp 0.729823542385491 0.529757318502525 NA NA prediction 0.400132447765932 Functional Loss - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113512205 chr13:113512204 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_12443 0 0 1 0 2 ATP11A chr13:113512234 5'GT 113512234 Upstream 31bp 11784 chr14 21762957 21762957 1 + T C COAD 21762958 + 21762938 21762978 41 TTTCTTGGAAGCAACAGGATGAGATCAAAAGGTACTTAGAG TTTCTTGGAAGCAACAGGACGAGATCAAAAGGTACTTAGAG < 41bp 0.708846841101205 0.508786091386427 NA NA prediction 0.400121499429554 Functional Loss - RPGRIP1 ENSG00000092200 CDS Human protein_coding chr14:21762958 chr14:21762957 synonymous SNV . 0 20 hm7G_associated_SNPs_12445 0 0 0 0 1 RPGRIP1 chr14:21762968 5'GT 21762968 Upstream 12bp 11785 chrX 41203533 41203533 1 + T C STAD 41203534 + 41203514 41203554 41 GTCCTTGCGTGGTTTATGGTGGTGCCGATATTGGTCAGCAG GTCCTTGCGTGGTTTATGGCGGTGCCGATATTGGTCAGCAG < 41bp 0.756085829324131 0.556031145348712 NA NA prediction 0.400109367950838 Functional Loss - DDX3X ENSG00000215301 CDS Human protein_coding chrX:41203534 chrX:41203533 synonymous SNV . 0 20 hm7G_associated_SNPs_12448 0 0 1 0 1 DDX3X chrX:41203492 3'AG 41203492 Downstream 42bp 11786 chr5 148579953 148579953 1 + T C LUAD 148579954 + 148579934 148579974 41 CAAACGTGCTCCCAGTCCATGGCCAGCAGTAAGCCCATCAA CAAACGTGCTCCCAGTCCACGGCCAGCAGTAAGCCCATCAA < 41bp 0.753191086170614 0.553147468825902 NA NA prediction 0.400087234689423 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148579954 chr5:148579953 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_12449 0 0 0 0 2 ABLIM3 chr5:148579879 3'AG 148579879 Downstream 75bp 11787 chr5 148579953 148579953 1 + T C LUAD 148579954 + 148579934 148579974 41 CAAACGTGCTCCCAGTCCATGGCCAGCAGTAAGCCCATCAA CAAACGTGCTCCCAGTCCACGGCCAGCAGTAAGCCCATCAA < 41bp 0.753191086170614 0.553147468825902 NA NA prediction 0.400087234689423 Functional Loss - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148579954 chr5:148579953 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_12449 0 0 0 0 2 ABLIM3 chr5:148579991 5'GT 148579991 Upstream 39bp 11788 chr20 34618341 34618341 1 + T C UCEC 34618342 + 34618322 34618362 41 AATATCTTTCGGAAGGACCTGTTGCAGCTGCTCGTGGAGCC AATATCTTTCGGAAGGACCCGTTGCAGCTGCTCGTGGAGCC < 41bp 0.710248524636716 0.510213145908782 NA NA prediction 0.400070757455868 Functional Loss - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34618342 chr20:34618341 nonsynonymous SNV 0.130 3 20 hm7G_associated_SNPs_12451 0 0 0 3 1 CNBD2 chr20:34618279 3'AG 34618279 Downstream 63bp 11789 chr2 223786022 223786022 1 + T C SKCM 223786023 + 223786003 223786043 41 CAACCTCATAGCAAACCATTGCCCTCAGATATTGCAGTAAT CAACCTCATAGCAAACCATCGCCCTCAGATATTGCAGTAAT < 41bp 0.716196923559819 0.516173680415477 NA NA prediction 0.400046486288683 Functional Loss - ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223786023 chr2:223786022 nonsynonymous SNV 0.665 0 20 hm7G_associated_SNPs_12455 0 0 1 0 1 ACSL3 chr2:223785998 3'AG 223785998 Downstream 25bp 11790 chr12 56396036 56396036 1 + A G KIRC 56396037 + 56396017 56396057 41 GCACAGAGCTGTGGTCCTCAGGCTCCAACAGGCCTGCAGGT GCACAGAGCTGTGGTCCTCGGGCTCCAACAGGCCTGCAGGT < 41bp 0.700015029159373 0.482189223942575 NA NA prediction 0.400030058318746 Functional Loss - SUOX ENSG00000139531 CDS Human protein_coding chr12:56396037 chr12:56396036 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_12457 0 0 1 0 2 SUOX chr12:56395996 3'AG 56395996 Downstream 41bp 11791 chr12 56396036 56396036 1 + A G KIRC 56396037 + 56396017 56396057 41 GCACAGAGCTGTGGTCCTCAGGCTCCAACAGGCCTGCAGGT GCACAGAGCTGTGGTCCTCGGGCTCCAACAGGCCTGCAGGT < 41bp 0.700015029159373 0.482189223942575 NA NA prediction 0.400030058318746 Functional Loss - SUOX ENSG00000139531 CDS Human protein_coding chr12:56396037 chr12:56396036 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_12457 0 0 1 0 2 SUOX chr12:56396055 5'GT 56396055 Upstream 20bp 11792 chrX 155227416 155227416 1 + A G UCEC 155227417 + 155227397 155227437 41 TCCAGGTTGGGGATGCCTCAGACTTGTGATGGGACTGGGCA TCCAGGTTGGGGATGCCTCGGACTTGTGATGGGACTGGGCA < 41bp 0.74210198818182 0.542089166941942 NA NA prediction 0.400025642479756 Functional Loss - IL9R ENSG00000124334 CDS Human protein_coding chrX:155227417 chrX:155227416 nonsynonymous SNV 0.088 1 20 hm7G_associated_SNPs_12458 0 0 0 0 1 IL9R chrX:155227452 5'GT 155227452 Upstream 37bp 11793 chr20 18526600 18526600 1 + T G SKCM 18526601 + 18526581 18526621 41 TGGTATTTTCTTTCCATAGTGTCAAAAGTTTGGACAGTATA TGGTATTTTCTTTCCATAGGGTCAAAAGTTTGGACAGTATA < 41bp 0.700007898772034 0.380946068209468 NA NA prediction 0.400015797544068 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18526601 chr20:18526600 nonsynonymous SNV 0.965 4 20 hm7G_associated_SNPs_12459 0 0 1 0 2 SEC23B chr20:18526600 5'GT 18526600 Upstream 1bp 11794 chr20 18526600 18526600 1 + T G SKCM 18526601 + 18526581 18526621 41 TGGTATTTTCTTTCCATAGTGTCAAAAGTTTGGACAGTATA TGGTATTTTCTTTCCATAGGGTCAAAAGTTTGGACAGTATA < 41bp 0.700007898772034 0.380946068209468 NA NA prediction 0.400015797544068 Functional Loss - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18526601 chr20:18526600 nonsynonymous SNV 0.965 4 20 hm7G_associated_SNPs_12459 0 0 1 0 2 SEC23B chr20:18526677 5'GT 18526677 Upstream 78bp 11795 chrX 47863745 47863745 1 + A G rs516464 47863746 + 47863726 47863766 41 ACTTGGAGGGCAGCAACAGAGTTGCAGGTGTAAAATAACGG ACTTGGAGGGCAGCAACAGGGTTGCAGGTGTAAAATAACGG < 41bp 0.700003619954889 0.494028786409948 NA NA prediction 0.400007239909777 Functional Loss - SPACA5 ENSG00000171489 UTR5 Human protein_coding chrX:47863746 chrX:47863745 . . 0 20 hm7G_associated_SNPs_12462 0 0 0 0 1 SPACA5 chrX:47863815 5'GT 47863815 Upstream 71bp 11796 chr3 130613615 130613615 1 + T C COAD 130613616 + 130613596 130613636 41 GTGCAGTTTCGATGGAAAATGAAGGTAAAGGCCCCTGGCCG GTGCAGTTTCGATGGAAAACGAAGGTAAAGGCCCCTGGCCG < 41bp 0.700000869971291 0.496692831818138 NA NA prediction 0.400001739942582 Functional Loss - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130613616 chr3:130613615 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12463 0 0 1 0 2 ATP2C1 chr3:130613552 3'AG 130613552 Downstream 64bp 11797 chr3 130613615 130613615 1 + T C COAD 130613616 + 130613596 130613636 41 GTGCAGTTTCGATGGAAAATGAAGGTAAAGGCCCCTGGCCG GTGCAGTTTCGATGGAAAACGAAGGTAAAGGCCCCTGGCCG < 41bp 0.700000869971291 0.496692831818138 NA NA prediction 0.400001739942582 Functional Loss - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130613616 chr3:130613615 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12463 0 0 1 0 2 ATP2C1 chr3:130613619 5'GT 130613619 Upstream 5bp 11798 chr3 13659650 13659650 1 + G T LUSC 13659651 + 13659631 13659671 41 GCTGCCGAACAGCCTGCCGGGCGATGACCAGGATGAGTGCC GCTGCCGAACAGCCTGCCGTGCGATGACCAGGATGAGTGCC < 41bp 0.500270289915658 0.821961374373896 NA NA prediction 0.643382168916474 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13659651 chr3:13659650 nonsynonymous SNV 0.025 4 20 hm7G_associated_SNPs_12465 0 0 0 0 1 FBLN2 chr3:13659576 3'AG 13659576 Downstream 75bp 11799 chr16 67679959 67679959 1 + G T LUAD 67679960 + 67679940 67679980 41 ACCTGGAGGTCCAGGCCATGGCGCTGCAGGAGACACCCCCT ACCTGGAGGTCCAGGCCATTGCGCTGCAGGAGACACCCCCT < 41bp 0.502224374372357 0.823526854460721 NA NA prediction 0.64260496017673 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67679960 chr16:67679959 nonsynonymous SNV 0.961 1 20 hm7G_associated_SNPs_12466 0 0 0 0 2 CARMIL2 chr16:67679921 3'AG 67679921 Downstream 39bp 11800 chr16 67679959 67679959 1 + G T LUAD 67679960 + 67679940 67679980 41 ACCTGGAGGTCCAGGCCATGGCGCTGCAGGAGACACCCCCT ACCTGGAGGTCCAGGCCATTGCGCTGCAGGAGACACCCCCT < 41bp 0.502224374372357 0.823526854460721 NA NA prediction 0.64260496017673 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67679960 chr16:67679959 nonsynonymous SNV 0.961 1 20 hm7G_associated_SNPs_12466 0 0 0 0 2 CARMIL2 chr16:67679983 5'GT 67679983 Upstream 25bp 11801 chr10 43609034 43609034 1 + G T ACC 43609035 + 43609015 43609055 41 GTTGGGGGACACGAGCCTGGGGAGCCCCGGGGGATTAAAGC GTTGGGGGACACGAGCCTGTGGAGCCCCGGGGGATTAAAGC < 41bp 0.502649233501765 0.823925244589722 NA NA prediction 0.642552022175914 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43609035 chr10:43609034 nonsynonymous SNV 0.002 4 20 hm7G_associated_SNPs_12467 0 0 0 0 1 RET chr10:43609004 3'AG 43609004 Downstream 31bp 11802 chr16 816159 816159 1 + G T LUSC 816160 + 816140 816180 41 GCGTGGATGCGGCCCTGCTGGCCACCCAGATGGACCGCGTG GCGTGGATGCGGCCCTGCTTGCCACCCAGATGGACCGCGTG < 41bp 0.498975338111751 0.821119731793095 NA NA prediction 0.64223946358619 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816160 chr16:816159 synonymous SNV . 0 20 hm7G_associated_SNPs_12468 0 0 0 0 1 MSLN chr16:816237 5'GT 816237 Upstream 79bp 11803 chr1 201286774 201286774 1 + G T LUSC 201286775 + 201286755 201286795 41 AGAACGTCCAGCAGGCCGCGGCAGGGGCCCTGCGCAACCTG AGAACGTCCAGCAGGCCGCTGCAGGGGCCCTGCGCAACCTG < 41bp 0.498271167246336 0.82051093584123 NA NA prediction 0.64102187168246 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201286775 chr1:201286774 synonymous SNV . 0 20 hm7G_associated_SNPs_12469 0 0 0 0 1 PKP1 chr1:201286700 3'AG 201286700 Downstream 75bp 11804 chr16 31422671 31422671 1 + G T LUAD 31422672 + 31422652 31422692 41 TGTTCTCCGTGGTGAGCAGGGCCACCCCTGGGGCCGCTTTG TGTTCTCCGTGGTGAGCAGTGCCACCCCTGGGGCCGCTTTG < 41bp 0.49766507236194 0.820463627693811 NA NA prediction 0.640927255387622 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422672 chr16:31422671 nonsynonymous SNV 0.973 3 20 hm7G_associated_SNPs_12470 0 0 0 0 2 ITGAD chr16:31422626 3'AG 31422626 Downstream 46bp 11805 chr16 31422671 31422671 1 + G T LUAD 31422672 + 31422652 31422692 41 TGTTCTCCGTGGTGAGCAGGGCCACCCCTGGGGCCGCTTTG TGTTCTCCGTGGTGAGCAGTGCCACCCCTGGGGCCGCTTTG < 41bp 0.49766507236194 0.820463627693811 NA NA prediction 0.640927255387622 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422672 chr16:31422671 nonsynonymous SNV 0.973 3 20 hm7G_associated_SNPs_12470 0 0 0 0 2 ITGAD chr16:31422629 3'AG 31422629 Downstream 43bp 11806 chr19 18965450 18965450 1 + G T rs201936003 18965451 + 18965431 18965471 41 TTGAGCTGCGGAGCAGCGTGGGTGCACCTGTGGAGGTGACT TTGAGCTGCGGAGCAGCGTTGGTGCACCTGTGGAGGTGACT < 41bp 0.502685686034395 0.822941943862259 NA NA prediction 0.640512515655728 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18965451 chr19:18965450 synonymous SNV . 0 20 hm7G_associated_SNPs_12471 0 0 1 0 2 UPF1 chr19:18965410 3'AG 18965410 Downstream 41bp 11807 chr19 18965450 18965450 1 + G T rs201936003 18965451 + 18965431 18965471 41 TTGAGCTGCGGAGCAGCGTGGGTGCACCTGTGGAGGTGACT TTGAGCTGCGGAGCAGCGTTGGTGCACCTGTGGAGGTGACT < 41bp 0.502685686034395 0.822941943862259 NA NA prediction 0.640512515655728 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18965451 chr19:18965450 synonymous SNV . 0 20 hm7G_associated_SNPs_12471 0 0 1 0 2 UPF1 chr19:18965518 5'GT 18965518 Upstream 69bp 11808 chr11 130332438 130332438 1 + G T UCEC 130332439 + 130332419 130332459 41 AGCCCATCTCCCTGCCCGAGGATCTGCCGGGCGCCAGCTAC AGCCCATCTCCCTGCCCGATGATCTGCCGGGCGCCAGCTAC < 41bp 0.507074193111566 0.826039501694645 NA NA prediction 0.637930617166158 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130332439 chr11:130332438 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_12474 0 0 0 0 1 ADAMTS15 chr11:130332392 3'AG 130332392 Downstream 47bp 11809 chr1 202273746 202273746 1 + G T UCEC 202273747 + 202273727 202273767 41 ATGTGCCAACAGCTGCCCAGGCTCCGAGTCCTGTGAGTGCT ATGTGCCAACAGCTGCCCATGCTCCGAGTCCTGTGAGTGCT < 41bp 0.498342764253212 0.818646459975431 NA NA prediction 0.637292919950862 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273747 chr1:202273746 nonsynonymous SNV 0.896 1 20 hm7G_associated_SNPs_12475 0 0 0 0 2 LGR6 chr1:202273687 3'AG 202273687 Downstream 60bp 11810 chr1 202273746 202273746 1 + G T UCEC 202273747 + 202273727 202273767 41 ATGTGCCAACAGCTGCCCAGGCTCCGAGTCCTGTGAGTGCT ATGTGCCAACAGCTGCCCATGCTCCGAGTCCTGTGAGTGCT < 41bp 0.498342764253212 0.818646459975431 NA NA prediction 0.637292919950862 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273747 chr1:202273746 nonsynonymous SNV 0.896 1 20 hm7G_associated_SNPs_12475 0 0 0 0 2 LGR6 chr1:202273758 5'GT 202273758 Upstream 13bp 11811 chr21 47422543 47422543 1 + G T LUAD 47422544 + 47422524 47422564 41 ACCATCCCAGGGCCGGCCCGGCCTCTCGCTGGTCAAGGAGA ACCATCCCAGGGCCGGCCCTGCCTCTCGCTGGTCAAGGAGA < 41bp 0.501591195716349 0.820153252114289 NA NA prediction 0.637124112795879 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47422544 chr21:47422543 nonsynonymous SNV 0.009 3 20 hm7G_associated_SNPs_12476 0 0 1 0 1 COL6A1 chr21:47422624 5'GT 47422624 Upstream 82bp 11812 chr2 47233165 47233165 1 + G T SKCM 47233166 + 47233146 47233186 41 ACCTCCTGAGCATCACGTTGGGCAGAAGGGGACAGTACGTC ACCTCCTGAGCATCACGTTTGGCAGAAGGGGACAGTACGTC < 41bp 0.503684817983844 0.82188353321685 NA NA prediction 0.636397430466012 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47233166 chr2:47233165 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_12477 0 0 1 0 1 TTC7A chr2:47233198 5'GT 47233198 Upstream 34bp 11813 chr17 8222373 8222373 1 + G T PAAD 8222374 + 8222354 8222394 41 CCCATCGCTCCCTGGTCCAGGCCCAGCAGGTTCCGGATCCA CCCATCGCTCCCTGGTCCATGCCCAGCAGGTTCCGGATCCA < 41bp 0.494807862815538 0.818194549828831 NA NA prediction 0.636389099657661 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222374 chr17:8222373 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_12478 0 0 0 0 1 ARHGEF15 chr17:8222325 3'AG 8222325 Downstream 49bp 11814 chr7 150704352 150704352 1 + G T PAAD 150704353 + 150704333 150704373 41 CCTTCCGAGGCTGGGCCCAGGCTGCCTTCCAGGTGAGCCCA CCTTCCGAGGCTGGGCCCATGCTGCCTTCCAGGTGAGCCCA < 41bp 0.503473451873784 0.821547247533511 NA NA prediction 0.636147591319455 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704353 chr7:150704352 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_12479 0 0 1 0 1 NOS3 chr7:150704364 5'GT 150704364 Upstream 13bp 11815 chr20 48500552 48500552 1 + G T CESC 48500553 + 48500533 48500573 41 TGGACATCGAGGACGCCAAGGCACACCGCAGGAACAAGAAG TGGACATCGAGGACGCCAATGCACACCGCAGGAACAAGAAG < 41bp 0.49778216169389 0.818001065778579 NA NA prediction 0.636002131557158 Functional Gain - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48500553 chr20:48500552 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_12480 0 0 1 0 1 SLC9A8 chr20:48500603 5'GT 48500603 Upstream 52bp 11816 chr19 54407981 54407981 1 + G T LUSC 54407982 + 54407962 54408002 41 CGCTTTCCCGGGAAGCCGTGGCCATCTGCAAGGGGGTGAGA CGCTTTCCCGGGAAGCCGTTGCCATCTGCAAGGGGGTGAGA < 41bp 0.50499715984247 0.822970323728556 NA NA prediction 0.635946327772173 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54407982 chr19:54407981 synonymous SNV . 0 20 hm7G_associated_SNPs_12481 0 0 0 0 2 PRKCG chr19:54407889 3'AG 54407889 Downstream 93bp 11817 chr19 54407981 54407981 1 + G T LUSC 54407982 + 54407962 54408002 41 CGCTTTCCCGGGAAGCCGTGGCCATCTGCAAGGGGGTGAGA CGCTTTCCCGGGAAGCCGTTGCCATCTGCAAGGGGGTGAGA < 41bp 0.50499715984247 0.822970323728556 NA NA prediction 0.635946327772173 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54407982 chr19:54407981 synonymous SNV . 0 20 hm7G_associated_SNPs_12481 0 0 0 0 2 PRKCG chr19:54407996 5'GT 54407996 Upstream 16bp 11818 chr16 1547465 1547465 1 + G T LUAD 1547466 + 1547446 1547486 41 TGGAGCAAGTGCCGGACCGGGCCATGGAGGCTGTGCTGACC TGGAGCAAGTGCCGGACCGTGCCATGGAGGCTGTGCTGACC < 41bp 0.505979170204817 0.823921225956138 NA NA prediction 0.635884111502643 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1547466 chr16:1547465 synonymous SNV . 0 20 hm7G_associated_SNPs_12482 0 0 1 0 1 TELO2 chr16:1547509 5'GT 1547509 Upstream 45bp 11819 chr17 37901726 37901726 1 + G T LUSC 37901727 + 37901707 37901747 41 GGACTTCTCTGGCCATGCTGGGCGTGTCATTGAGAACCCCC GGACTTCTCTGGCCATGCTTGGCGTGTCATTGAGAACCCCC < 41bp 0.509918600781517 0.827859824226413 NA NA prediction 0.635882446889791 Functional Gain - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37901727 chr17:37901726 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_12483 0 0 1 0 1 GRB7 chr17:37901675 3'AG 37901675 Downstream 52bp 11820 chr17 32955690 32955690 1 + G T LUAD 32955691 + 32955671 32955711 41 AGCACTCAACAGCCACCGTGGATGTGGCCTGGGCTCAGAGC AGCACTCAACAGCCACCGTTGATGTGGCCTGGGCTCAGAGC < 41bp 0.508699175473635 0.826435597385724 NA NA prediction 0.635472843824179 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32955691 chr17:32955690 synonymous SNV . 0 20 hm7G_associated_SNPs_12485 0 0 0 0 1 TMEM132E chr17:32955728 5'GT 32955728 Upstream 39bp 11821 chr19 49637395 49637395 1 + G T UCEC 49637396 + 49637376 49637416 41 GCTTACAGCTTCACCTCAAGGAGCGCATGGGGGCGCTGGAG GCTTACAGCTTCACCTCAATGAGCGCATGGGGGCGCTGGAG < 41bp 0.502833284071345 0.819881529793113 NA NA prediction 0.634096491443536 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49637396 chr19:49637395 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_12488 0 0 1 0 1 PPFIA3 chr19:49637422 5'GT 49637422 Upstream 28bp 11822 chr19 17988611 17988611 1 + G T LUSC 17988612 + 17988592 17988632 41 GGTGTGGCTCTCCATGTATGGCGTGAACCAGGCGCAGGTGC GGTGTGGCTCTCCATGTATTGCGTGAACCAGGCGCAGGTGC < 41bp 0.496762190534398 0.816754192318027 NA NA prediction 0.633508384636055 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17988612 chr19:17988611 nonsynonymous SNV 0.157 3 20 hm7G_associated_SNPs_12491 0 0 0 0 2 SLC5A5 chr19:17988532 3'AG 17988532 Downstream 80bp 11823 chr19 17988611 17988611 1 + G T LUSC 17988612 + 17988592 17988632 41 GGTGTGGCTCTCCATGTATGGCGTGAACCAGGCGCAGGTGC GGTGTGGCTCTCCATGTATTGCGTGAACCAGGCGCAGGTGC < 41bp 0.496762190534398 0.816754192318027 NA NA prediction 0.633508384636055 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17988612 chr19:17988611 nonsynonymous SNV 0.157 3 20 hm7G_associated_SNPs_12491 0 0 0 0 2 SLC5A5 chr19:17988672 5'GT 17988672 Upstream 62bp 11824 chr19 2408406 2408406 1 + G T CESC 2408407 + 2408387 2408427 41 GGGTGCGACCTACCTCAGCGGCTCGGAGGCCAGCACCGTGC GGGTGCGACCTACCTCAGCTGCTCGGAGGCCAGCACCGTGC < 41bp 0.50180626501834 0.818465097899415 NA NA prediction 0.633317665762151 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2408407 chr19:2408406 nonsynonymous SNV 0.085 4 20 hm7G_associated_SNPs_12492 0 0 0 0 1 TMPRSS9 chr19:2408354 3'AG 2408354 Downstream 53bp 11825 chr4 1369876 1369876 1 + G T UCEC 1369877 + 1369857 1369897 41 AGAAGCTGGCAGCAGAGCGGGCCCGGGCGCCTGTGGTGCCC AGAAGCTGGCAGCAGAGCGTGCCCGGGCGCCTGTGGTGCCC < 41bp 0.497915844400945 0.816652034333043 NA NA prediction 0.633304068666086 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1369877 chr4:1369876 synonymous SNV . 0 20 hm7G_associated_SNPs_12493 0 0 1 0 2 UVSSA chr4:1369822 3'AG 1369822 Downstream 55bp 11826 chr4 1369876 1369876 1 + G T UCEC 1369877 + 1369857 1369897 41 AGAAGCTGGCAGCAGAGCGGGCCCGGGCGCCTGTGGTGCCC AGAAGCTGGCAGCAGAGCGTGCCCGGGCGCCTGTGGTGCCC < 41bp 0.497915844400945 0.816652034333043 NA NA prediction 0.633304068666086 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1369877 chr4:1369876 synonymous SNV . 0 20 hm7G_associated_SNPs_12493 0 0 1 0 2 UVSSA chr4:1369956 5'GT 1369956 Upstream 81bp 11827 chr1 206650076 206650076 1 + G T LUAD 206650077 + 206650057 206650097 41 CCCCAGCAAAAAGCGTTCGGGGTGACTGTGGATCTCTGGAG CCCCAGCAAAAAGCGTTCGTGGTGACTGTGGATCTCTGGAG < 41bp 0.502401450712157 0.819005275196269 NA NA prediction 0.633207648968224 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206650077 chr1:206650076 nonsynonymous SNV 0.983 3 20 hm7G_associated_SNPs_12494 0 0 0 0 1 IKBKE chr1:206650021 3'AG 206650021 Downstream 56bp 11828 chr20 42161428 42161428 1 + G T STAD 42161429 + 42161409 42161449 41 CTAGAGTCCCCCACCCCTGGGCTTCCAGGTGGGCATGAAGC CTAGAGTCCCCCACCCCTGTGCTTCCAGGTGGGCATGAAGC < 41bp 0.504702419536645 0.821165736280034 NA NA prediction 0.632926633486779 Functional Gain - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42161429 chr20:42161428 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12495 0 0 1 0 1 L3MBTL1 chr20:42161413 3'AG 42161413 Downstream 16bp 11829 chr22 41747617 41747617 1 + G T COAD 41747618 + 41747598 41747638 41 AGAAGTACTGGCAGCAGATGGAGGCGCATGCGGGGAAGGCC AGAAGTACTGGCAGCAGATTGAGGCGCATGCGGGGAAGGCC < 41bp 0.501225462285376 0.817352362296628 NA NA prediction 0.632253800022505 Functional Gain - ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41747618 chr22:41747617 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_12497 0 0 1 0 2 ZC3H7B chr22:41747565 3'AG 41747565 Downstream 53bp 11830 chr22 41747617 41747617 1 + G T COAD 41747618 + 41747598 41747638 41 AGAAGTACTGGCAGCAGATGGAGGCGCATGCGGGGAAGGCC AGAAGTACTGGCAGCAGATTGAGGCGCATGCGGGGAAGGCC < 41bp 0.501225462285376 0.817352362296628 NA NA prediction 0.632253800022505 Functional Gain - ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41747618 chr22:41747617 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_12497 0 0 1 0 2 ZC3H7B chr22:41747650 5'GT 41747650 Upstream 34bp 11831 chr9 115923930 115923930 1 + G T UCEC 115923931 + 115923911 115923951 41 ACCATCGCAGAGACAGACGGGGACTCTGCAGGCTCAGATTC ACCATCGCAGAGACAGACGTGGACTCTGCAGGCTCAGATTC < 41bp 0.501669932553464 0.817759096634059 NA NA prediction 0.632178328161191 Functional Gain - SLC31A2 ENSG00000136867 CDS Human protein_coding chr9:115923931 chr9:115923930 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_12498 0 0 0 0 1 SLC31A2 chr9:115923978 5'GT 115923978 Upstream 49bp 11832 chr20 1281338 1281338 1 + G T UCEC 1281339 + 1281319 1281359 41 CCCGGCTGAAGGACACACAGGACCGGCTCCAGGACCGGTGA CCCGGCTGAAGGACACACATGACCGGCTCCAGGACCGGTGA < 41bp 0.503015100687813 0.819099618503001 NA NA prediction 0.632169035630374 Functional Gain - SNPH ENSG00000101298 CDS Human protein_coding chr20:1281339 chr20:1281338 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_12499 0 0 0 0 1 SNPH chr20:1281355 5'GT 1281355 Upstream 18bp 11833 chr19 13006823 13006823 1 + G T OV 13006824 + 13006804 13006844 41 AGCCAAGGGGGAGCTCCTGGGCTGCTTCGGGCTCACAGAGC AGCCAAGGGGGAGCTCCTGTGCTGCTTCGGGCTCACAGAGC < 41bp 0.49416923457597 0.816058938925228 NA NA prediction 0.632117877850456 Functional Gain - GCDH ENSG00000105607 CDS Human protein_coding chr19:13006824 chr19:13006823 nonsynonymous SNV 0.759 5 20 hm7G_associated_SNPs_12500 0 0 1 0 1 GCDH chr19:13006806 3'AG 13006806 Downstream 18bp 11834 chr9 130241717 130241717 1 + G T HNSC 130241718 + 130241698 130241738 41 CGCCTGGAACTGGGGCAGCGGGAGCACACCCAGCTCCTTCA CGCCTGGAACTGGGGCAGCTGGAGCACACCCAGCTCCTTCA < 41bp 0.495706426915667 0.816031322594467 NA NA prediction 0.632062645188935 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130241718 chr9:130241717 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_12501 0 0 1 0 1 LRSAM1 chr9:130241784 5'GT 130241784 Upstream 68bp 11835 chr7 44802875 44802875 1 + G T BRCA 44802876 + 44802856 44802896 41 AAAGCGGAACTTCAGCAGCGGCACCATCCCTGGCACCCCTG AAAGCGGAACTTCAGCAGCTGCACCATCCCTGGCACCCCTG < 41bp 0.49281608794258 0.816000161507548 NA NA prediction 0.632000323015095 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802876 chr7:44802875 nonsynonymous SNV 0.964 2 20 hm7G_associated_SNPs_12502 0 0 1 0 1 ZMIZ2 chr7:44802855 3'AG 44802855 Downstream 21bp 11836 chr20 37531341 37531341 1 + G T ESCA 37531342 + 37531322 37531362 41 GAGAAAATCAACGAGATGCGGGTGGCTCCTGAGCAGCAGAT GAGAAAATCAACGAGATGCTGGTGGCTCCTGAGCAGCAGAT < 41bp 0.503207914125248 0.819193763488003 NA NA prediction 0.631971698725508 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37531342 chr20:37531341 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_12503 0 0 0 0 2 PPP1R16B chr20:37531311 3'AG 37531311 Downstream 31bp 11837 chr20 37531341 37531341 1 + G T ESCA 37531342 + 37531322 37531362 41 GAGAAAATCAACGAGATGCGGGTGGCTCCTGAGCAGCAGAT GAGAAAATCAACGAGATGCTGGTGGCTCCTGAGCAGCAGAT < 41bp 0.503207914125248 0.819193763488003 NA NA prediction 0.631971698725508 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37531342 chr20:37531341 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_12503 0 0 0 0 2 PPP1R16B chr20:37531435 5'GT 37531435 Upstream 95bp 11838 chr6 26446006 26446006 1 + G T UCEC 26446007 + 26445987 26446027 41 TCTGGAGTGCAGGTCCACTGGCTGGTACCCCCAACCCCAAA TCTGGAGTGCAGGTCCACTTGCTGGTACCCCCAACCCCAAA < 41bp 0.500871615460634 0.81657125788334 NA NA prediction 0.631399284845412 Functional Gain - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446007 chr6:26446006 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_12505 0 0 0 0 1 BTN3A3 chr6:26445932 3'AG 26445932 Downstream 75bp 11839 chr9 34647934 34647934 1 + G T LUSC 34647935 + 34647915 34647955 41 CCTCAGTCACAGAGGAGCTGGGTGCCCAGTACCCTTGGGTG CCTCAGTCACAGAGGAGCTTGGTGCCCAGTACCCTTGGGTG < 41bp 0.502154679060112 0.817848984070518 NA NA prediction 0.63138861002081 Functional Gain - GALT ENSG00000213930 CDS Human protein_coding chr9:34647935 chr9:34647934 synonymous SNV . 0 20 hm7G_associated_SNPs_12506 0 0 1 0 1 GALT chr9:34647958 5'GT 34647958 Upstream 25bp 11840 chr14 73718408 73718408 1 + G T BLCA 73718409 + 73718389 73718429 41 GGGGAATACTACCTCAATGGGCACTGGACCATCGAGGCGGC GGGGAATACTACCTCAATGTGCACTGGACCATCGAGGCGGC < 41bp 0.492946780635886 0.815690572115219 NA NA prediction 0.631381144230439 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73718409 chr14:73718408 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_12507 0 0 1 0 1 PAPLN chr14:73718372 3'AG 73718372 Downstream 37bp 11841 chr7 149423124 149423124 1 + G T LUAD 149423125 + 149423105 149423145 41 GGATTTTGGGAGTCCTGTGGGGAACCAGGGGCAGCATCCTG GGATTTTGGGAGTCCTGTGTGGAACCAGGGGCAGCATCCTG < 41bp 0.499846932055721 0.81560488892161 NA NA prediction 0.631209777843221 Functional Gain - KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149423125 chr7:149423124 nonsynonymous SNV 0.030 3 20 hm7G_associated_SNPs_12509 0 0 1 0 1 KRBA1 chr7:149423151 5'GT 149423151 Upstream 28bp 11842 chr11 120097609 120097609 1 + G T STAD 120097610 + 120097590 120097630 41 CGCTGTCAACTTCAGCCAGGGGGCCCTGCTGAGCCCCCATC CGCTGTCAACTTCAGCCAGTGGGCCCTGCTGAGCCCCCATC < 41bp 0.501251716056722 0.816818364149833 NA NA prediction 0.631133296186222 Functional Gain - OAF ENSG00000184232 CDS Human protein_coding chr11:120097610 chr11:120097609 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_12510 0 0 0 0 2 OAF chr11:120097525 3'AG 120097525 Downstream 85bp 11843 chr11 120097609 120097609 1 + G T STAD 120097610 + 120097590 120097630 41 CGCTGTCAACTTCAGCCAGGGGGCCCTGCTGAGCCCCCATC CGCTGTCAACTTCAGCCAGTGGGCCCTGCTGAGCCCCCATC < 41bp 0.501251716056722 0.816818364149833 NA NA prediction 0.631133296186222 Functional Gain - OAF ENSG00000184232 CDS Human protein_coding chr11:120097610 chr11:120097609 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_12510 0 0 0 0 2 OAF chr11:120097705 5'GT 120097705 Upstream 97bp 11844 chr5 38406280 38406280 1 + G T LUSC 38406281 + 38406261 38406301 41 CCCGTTATATCACCGACATGGGAGCTGGTGAGGATGATGAA CCCGTTATATCACCGACATTGGAGCTGGTGAGGATGATGAA < 41bp 0.498533608254507 0.815436318076128 NA NA prediction 0.630872636152255 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38406281 chr5:38406280 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_12511 0 0 0 0 2 EGFLAM chr5:38406228 3'AG 38406228 Downstream 53bp 11845 chr5 38406280 38406280 1 + G T LUSC 38406281 + 38406261 38406301 41 CCCGTTATATCACCGACATGGGAGCTGGTGAGGATGATGAA CCCGTTATATCACCGACATTGGAGCTGGTGAGGATGATGAA < 41bp 0.498533608254507 0.815436318076128 NA NA prediction 0.630872636152255 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38406281 chr5:38406280 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_12511 0 0 0 0 2 EGFLAM chr5:38406343 5'GT 38406343 Upstream 64bp 11846 chrX 43601242 43601242 1 + G T THCA 43601243 + 43601223 43601263 41 GTGTGAGGAGCAGTACTCTGGGGGCTGCTACACGGCCTACT GTGTGAGGAGCAGTACTCTTGGGGCTGCTACACGGCCTACT < 41bp 0.499258617844104 0.8154298697399 NA NA prediction 0.630859739479801 Functional Gain - MAOA ENSG00000189221 CDS Human protein_coding chrX:43601243 chrX:43601242 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_12512 0 0 0 0 2 MAOA chrX:43601197 3'AG 43601197 Downstream 46bp 11847 chrX 43601242 43601242 1 + G T THCA 43601243 + 43601223 43601263 41 GTGTGAGGAGCAGTACTCTGGGGGCTGCTACACGGCCTACT GTGTGAGGAGCAGTACTCTTGGGGCTGCTACACGGCCTACT < 41bp 0.499258617844104 0.8154298697399 NA NA prediction 0.630859739479801 Functional Gain - MAOA ENSG00000189221 CDS Human protein_coding chrX:43601243 chrX:43601242 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_12512 0 0 0 0 2 MAOA chrX:43601294 5'GT 43601294 Upstream 53bp 11848 chr1 27627865 27627865 1 + G T UCEC 27627866 + 27627846 27627886 41 GTGCCTGGACGACTTCAAAGGGAAATTTCCGGAGCAGGCCC GTGCCTGGACGACTTCAAATGGAAATTTCCGGAGCAGGCCC < 41bp 0.509903295545761 0.825269529170467 NA NA prediction 0.630732467249412 Functional Gain - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27627866 chr1:27627865 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12513 0 0 1 2 1 WDTC1 chr1:27627952 5'GT 27627952 Upstream 88bp 11849 chr4 1732991 1732991 1 + G T UCEC 1732992 + 1732972 1733012 41 AGCAGGGGCAGCCTGCCTTGGAGCTGAAAGAGGAGAGCTTC AGCAGGGGCAGCCTGCCTTTGAGCTGAAAGAGGAGAGCTTC < 41bp 0.495718430542691 0.815361004729681 NA NA prediction 0.630722009459361 Functional Gain - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1732992 chr4:1732991 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_12515 0 0 1 0 1 TACC3 chr4:1732899 3'AG 1732899 Downstream 93bp 11850 chr1 200878399 200878399 1 + G T COAD 200878400 + 200878380 200878420 41 CCCAGTGCCTCCAGCCTGTGGCTTCTGGAGCCTGCCTCCTA CCCAGTGCCTCCAGCCTGTTGCTTCTGGAGCCTGCCTCCTA < 41bp 0.511433186265976 0.826269374836146 NA NA prediction 0.629672377140341 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200878400 chr1:200878399 nonsynonymous SNV 0.938 0 20 hm7G_associated_SNPs_12516 0 0 0 0 1 C1orf106 chr1:200878352 3'AG 200878352 Downstream 48bp 11851 chr20 34061830 34061830 1 + G T ESCA 34061831 + 34061811 34061851 41 CTGCCCAGGGCCAGAAGGAGGAACAGCAGGAGGAGCTGCAC CTGCCCAGGGCCAGAAGGATGAACAGCAGGAGGAGCTGCAC < 41bp 0.498078449143311 0.814830566863871 NA NA prediction 0.629661133727741 Functional Gain - CEP250 ENSG00000126001 CDS Human protein_coding chr20:34061831 chr20:34061830 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_12517 0 0 1 1 1 CEP250 chr20:34061877 5'GT 34061877 Upstream 48bp 11852 chr1 17548814 17548814 1 + G T LUAD 17548815 + 17548795 17548835 41 AAGGGTGCCAACAGCTTCAGGGTCTCTGGAAGCTCCGGGGT AAGGGTGCCAACAGCTTCATGGTCTCTGGAAGCTCCGGGGT < 41bp 0.496087757075293 0.814717623350475 NA NA prediction 0.629435246700949 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17548815 chr1:17548814 nonsynonymous SNV 0.901 1 20 hm7G_associated_SNPs_12519 0 0 0 0 1 PADI1 chr1:17548785 3'AG 17548785 Downstream 30bp 11853 chr19 6744604 6744604 1 + G T SARC 6744605 + 6744585 6744625 41 ACGCAGGGCCACCCGCCTGGGTGCCGGGTATGGGCTCCTGT ACGCAGGGCCACCCGCCTGTGTGCCGGGTATGGGCTCCTGT < 41bp 0.498556117874902 0.814691318899942 NA NA prediction 0.629382637799884 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6744605 chr19:6744604 nonsynonymous SNV 0.550 4 20 hm7G_associated_SNPs_12520 0 0 1 0 1 TRIP10 chr19:6744565 3'AG 6744565 Downstream 40bp 11854 chr20 36028594 36028594 1 + G T LUAD 36028595 + 36028575 36028615 41 CTCCAGAGGCCTTCCTGCAGGAGGCCCAGGTCATGAAGAAG CTCCAGAGGCCTTCCTGCATGAGGCCCAGGTCATGAAGAAG < 41bp 0.500803318217596 0.815486909172846 NA NA prediction 0.6293671819105 Functional Gain - SRC ENSG00000197122 CDS Human protein_coding chr20:36028595 chr20:36028594 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12521 0 0 1 0 1 SRC chr20:36028518 3'AG 36028518 Downstream 77bp 11855 chr22 39125579 39125579 1 + G T LUAD 39125580 + 39125560 39125600 41 GAGGGGGGCCCGTCTGGTGGGCCAGCAGTAGGAGCACCCCC GAGGGGGGCCCGTCTGGTGTGCCAGCAGTAGGAGCACCCCC < 41bp 0.493867070451028 0.814626981891489 NA NA prediction 0.629253963782978 Functional Gain - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125580 chr22:39125579 nonsynonymous SNV 0.093 0 20 hm7G_associated_SNPs_12523 0 0 1 0 1 GTPBP1 chr22:39125667 5'GT 39125667 Upstream 89bp 11856 chr5 148695769 148695769 1 + G T UCEC 148695770 + 148695750 148695790 41 GCTCAATGAGCAGGGCTGCGGGCCGCAAGATCACCCGTATC GCTCAATGAGCAGGGCTGCTGGCCGCAAGATCACCCGTATC < 41bp 0.498333299695801 0.814576959137935 NA NA prediction 0.62915391827587 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695770 chr5:148695769 synonymous SNV . 0 20 hm7G_associated_SNPs_12525 0 0 1 0 2 AFAP1L1 chr5:148695714 3'AG 148695714 Downstream 56bp 11857 chr5 148695769 148695769 1 + G T UCEC 148695770 + 148695750 148695790 41 GCTCAATGAGCAGGGCTGCGGGCCGCAAGATCACCCGTATC GCTCAATGAGCAGGGCTGCTGGCCGCAAGATCACCCGTATC < 41bp 0.498333299695801 0.814576959137935 NA NA prediction 0.62915391827587 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695770 chr5:148695769 synonymous SNV . 0 20 hm7G_associated_SNPs_12525 0 0 1 0 2 AFAP1L1 chr5:148695866 5'GT 148695866 Upstream 98bp 11858 chr20 39796506 39796506 1 + G T KIRC 39796507 + 39796487 39796527 41 TCCAGGAGCCTGACTACGGGGCCCTGTATGAGGGACGCAAC TCCAGGAGCCTGACTACGGTGCCCTGTATGAGGGACGCAAC < 41bp 0.515412575169586 0.829804070734856 NA NA prediction 0.628782991130539 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39796507 chr20:39796506 synonymous SNV . 0 20 hm7G_associated_SNPs_12527 0 0 1 0 2 PLCG1 chr20:39796492 3'AG 39796492 Downstream 15bp 11859 chr20 39796506 39796506 1 + G T KIRC 39796507 + 39796487 39796527 41 TCCAGGAGCCTGACTACGGGGCCCTGTATGAGGGACGCAAC TCCAGGAGCCTGACTACGGTGCCCTGTATGAGGGACGCAAC < 41bp 0.515412575169586 0.829804070734856 NA NA prediction 0.628782991130539 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39796507 chr20:39796506 synonymous SNV . 0 20 hm7G_associated_SNPs_12527 0 0 1 0 2 PLCG1 chr20:39796569 5'GT 39796569 Upstream 64bp 11860 chr6 43220497 43220497 1 + G T LUAD 43220498 + 43220478 43220518 41 TGAAAAAGATCGGGGGCGGGGGCTTTGGTGAGATCTACGAG TGAAAAAGATCGGGGGCGGTGGCTTTGGTGAGATCTACGAG < 41bp 0.507871722231592 0.82223658702658 NA NA prediction 0.628729729589975 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43220498 chr6:43220497 synonymous SNV . 0 20 hm7G_associated_SNPs_12528 0 0 0 0 1 TTBK1 chr6:43220477 3'AG 43220477 Downstream 21bp 11861 chr7 99800139 99800139 1 + G T HNSC 99800140 + 99800120 99800160 41 GCGGCGCCGCCTCCTAGCCGGGTTCTGCAAGCTGTTGCTTT GCGGCGCCGCCTCCTAGCCTGGTTCTGCAAGCTGTTGCTTT < 41bp 0.49752719208084 0.81434660395169 NA NA prediction 0.628693207903379 Functional Gain - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99800140 chr7:99800139 nonsynonymous SNV 0.540 3 20 hm7G_associated_SNPs_12530 0 0 0 0 2 STAG3 chr7:99800077 3'AG 99800077 Downstream 63bp 11862 chr7 99800139 99800139 1 + G T HNSC 99800140 + 99800120 99800160 41 GCGGCGCCGCCTCCTAGCCGGGTTCTGCAAGCTGTTGCTTT GCGGCGCCGCCTCCTAGCCTGGTTCTGCAAGCTGTTGCTTT < 41bp 0.49752719208084 0.81434660395169 NA NA prediction 0.628693207903379 Functional Gain - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99800140 chr7:99800139 nonsynonymous SNV 0.540 3 20 hm7G_associated_SNPs_12530 0 0 0 0 2 STAG3 chr7:99800213 5'GT 99800213 Upstream 75bp 11863 chr19 14153563 14153563 1 + G T HNSC 14153564 + 14153544 14153584 41 GGTATCAGGGAACCTCTGTGGGACGCCTGGAGGAGAGGAAC GGTATCAGGGAACCTCTGTTGGACGCCTGGAGGAGAGGAAC < 41bp 0.494667317633401 0.814329755606353 NA NA prediction 0.628659511212706 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153564 chr19:14153563 nonsynonymous SNV 0.039 2 20 hm7G_associated_SNPs_12531 0 0 0 0 2 IL27RA chr19:14153528 3'AG 14153528 Downstream 36bp 11864 chr19 14153563 14153563 1 + G T HNSC 14153564 + 14153544 14153584 41 GGTATCAGGGAACCTCTGTGGGACGCCTGGAGGAGAGGAAC GGTATCAGGGAACCTCTGTTGGACGCCTGGAGGAGAGGAAC < 41bp 0.494667317633401 0.814329755606353 NA NA prediction 0.628659511212706 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14153564 chr19:14153563 nonsynonymous SNV 0.039 2 20 hm7G_associated_SNPs_12531 0 0 0 0 2 IL27RA chr19:14153601 5'GT 14153601 Upstream 39bp 11865 chr14 93043721 93043721 1 + G T THCA 93043722 + 93043702 93043742 41 CAGATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGCT CAGATGTTCCTGGTTCGCCTGGACAGCAGCTCGAAGCAGCT < 41bp 0.506772469608919 0.821064605310431 NA NA prediction 0.628584271403023 Functional Gain - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043722 chr14:93043721 nonsynonymous SNV 0.015 3 20 hm7G_associated_SNPs_12532 0 0 0 0 1 RIN3 chr14:93043705 3'AG 93043705 Downstream 17bp 11866 chr3 127396603 127396603 1 + G T GBM 127396604 + 127396584 127396624 41 GGAGCCAGCGACCTCAGGGGGCCCCCCAGCCGTCACCCTGC GGAGCCAGCGACCTCAGGGTGCCCCCCAGCCGTCACCCTGC < 41bp 0.510448047538618 0.824648536005447 NA NA prediction 0.628400976933658 Functional Gain - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396604 chr3:127396603 nonsynonymous SNV 0.004 4 20 hm7G_associated_SNPs_12533 0 0 0 0 2 ABTB1 chr3:127396519 3'AG 127396519 Downstream 85bp 11867 chr3 127396603 127396603 1 + G T GBM 127396604 + 127396584 127396624 41 GGAGCCAGCGACCTCAGGGGGCCCCCCAGCCGTCACCCTGC GGAGCCAGCGACCTCAGGGTGCCCCCCAGCCGTCACCCTGC < 41bp 0.510448047538618 0.824648536005447 NA NA prediction 0.628400976933658 Functional Gain - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127396604 chr3:127396603 nonsynonymous SNV 0.004 4 20 hm7G_associated_SNPs_12533 0 0 0 0 2 ABTB1 chr3:127396686 5'GT 127396686 Upstream 84bp 11868 chr17 6909857 6909857 1 + G T CESC 6909858 + 6909838 6909878 41 AAGGGATGACATAGTGAAGGGGGACCCTGAGCTGCAGGCCT AAGGGATGACATAGTGAAGTGGGACCCTGAGCTGCAGGCCT < 41bp 0.507663124889283 0.821709275374446 NA NA prediction 0.628092300970325 Functional Gain - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6909858 chr17:6909857 nonsynonymous SNV 0.947 2 20 hm7G_associated_SNPs_12534 0 0 0 0 2 ALOX12 chr17:6909805 3'AG 6909805 Downstream 53bp 11869 chr17 6909857 6909857 1 + G T CESC 6909858 + 6909838 6909878 41 AAGGGATGACATAGTGAAGGGGGACCCTGAGCTGCAGGCCT AAGGGATGACATAGTGAAGTGGGACCCTGAGCTGCAGGCCT < 41bp 0.507663124889283 0.821709275374446 NA NA prediction 0.628092300970325 Functional Gain - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6909858 chr17:6909857 nonsynonymous SNV 0.947 2 20 hm7G_associated_SNPs_12534 0 0 0 0 2 ALOX12 chr17:6909926 5'GT 6909926 Upstream 70bp 11870 chr10 26506829 26506829 1 + G T LUAD 26506830 + 26506810 26506850 41 GCGGGAGCCAACCCCCGCGGGCCGCCGCCCGGAAGGCCGCC GCGGGAGCCAACCCCCGCGTGCCGCCGCCCGGAAGGCCGCC < 41bp 0.491803755949767 0.81400233159925 NA NA prediction 0.628004663198499 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26506830 chr10:26506829 synonymous SNV . 0 20 hm7G_associated_SNPs_12535 0 0 0 0 2 GAD2 chr10:26506771 3'AG 26506771 Downstream 59bp 11871 chr10 26506829 26506829 1 + G T LUAD 26506830 + 26506810 26506850 41 GCGGGAGCCAACCCCCGCGGGCCGCCGCCCGGAAGGCCGCC GCGGGAGCCAACCCCCGCGTGCCGCCGCCCGGAAGGCCGCC < 41bp 0.491803755949767 0.81400233159925 NA NA prediction 0.628004663198499 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26506830 chr10:26506829 synonymous SNV . 0 20 hm7G_associated_SNPs_12535 0 0 0 0 2 GAD2 chr10:26506920 5'GT 26506920 Upstream 92bp 11872 chr1 41284227 41284227 1 + G T LUAD 41284228 + 41284208 41284248 41 CATCGCCGCGGGTACCCAGGGCAACATCTTCGCCACGTCCG CATCGCCGCGGGTACCCAGTGCAACATCTTCGCCACGTCCG < 41bp 0.492238315731667 0.813999457343996 NA NA prediction 0.627998914687991 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41284228 chr1:41284227 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12536 0 0 1 0 1 KCNQ4 chr1:41284177 3'AG 41284177 Downstream 51bp 11873 chr16 89256843 89256843 1 + G T PAAD 89256844 + 89256824 89256864 41 AGCAGAGGGGGCACCCCCAGGCACTCTGGTGGCCACCTTCT AGCAGAGGGGGCACCCCCATGCACTCTGGTGGCCACCTTCT < 41bp 0.512584371325588 0.826551459908141 NA NA prediction 0.627934177165107 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89256844 chr16:89256843 nonsynonymous SNV 0.079 4 20 hm7G_associated_SNPs_12537 0 0 0 0 1 CDH15 chr16:89256904 5'GT 89256904 Upstream 62bp 11874 chr2 238990744 238990744 1 + G T LUSC 238990745 + 238990725 238990765 41 CAGGAACGGGTGGCAGCTGGGCTACCTCCCATCCTCGTGCA CAGGAACGGGTGGCAGCTGTGCTACCTCCCATCCTCGTGCA < 41bp 0.4889863453527 0.813872954268748 NA NA prediction 0.627745908537497 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990745 chr2:238990744 nonsynonymous SNV 0.103 1 20 hm7G_associated_SNPs_12539 0 0 1 0 1 SCLY chr2:238990686 3'AG 238990686 Downstream 59bp 11875 chr11 44219485 44219485 1 + G T STAD 44219486 + 44219466 44219506 41 CGAGTAGAGAGCCTCTTCCGGGTCATCACTGAAGTGTCCAA CGAGTAGAGAGCCTCTTCCTGGTCATCACTGAAGTGTCCAA < 41bp 0.504451838323213 0.818299518506414 NA NA prediction 0.627695360366403 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44219486 chr11:44219485 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12540 0 0 1 0 1 EXT2 chr11:44219568 5'GT 44219568 Upstream 84bp 11876 chr17 78210826 78210826 1 + G T LUAD 78210827 + 78210807 78210847 41 ACAGGGGAGACAGCTGAGGGGCTCCCTCCAGTCCGGATCCC ACAGGGGAGACAGCTGAGGTGCTCCCTCCAGTCCGGATCCC < 41bp 0.480022532695656 0.813774930269634 NA NA prediction 0.627549860539268 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210827 chr17:78210826 nonsynonymous SNV 0.847 5 20 hm7G_associated_SNPs_12542 0 0 1 0 2 SLC26A11 chr17:78210727 3'AG 78210727 Downstream 100bp 11877 chr17 78210826 78210826 1 + G T LUAD 78210827 + 78210807 78210847 41 ACAGGGGAGACAGCTGAGGGGCTCCCTCCAGTCCGGATCCC ACAGGGGAGACAGCTGAGGTGCTCCCTCCAGTCCGGATCCC < 41bp 0.480022532695656 0.813774930269634 NA NA prediction 0.627549860539268 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210827 chr17:78210826 nonsynonymous SNV 0.847 5 20 hm7G_associated_SNPs_12542 0 0 1 0 2 SLC26A11 chr17:78210902 5'GT 78210902 Upstream 77bp 11878 chr17 79952720 79952720 1 + G T ESCA 79952721 + 79952701 79952741 41 TGCCTGCAGCACCCCGGCGGGGCCACCCCAGTCTGCGTGTA TGCCTGCAGCACCCCGGCGTGGCCACCCCAGTCTGCGTGTA < 41bp 0.495983265702071 0.813713418098037 NA NA prediction 0.627426836196074 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79952721 chr17:79952720 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_12544 0 0 1 0 2 ASPSCR1 chr17:79952697 3'AG 79952697 Downstream 24bp 11879 chr17 79952720 79952720 1 + G T ESCA 79952721 + 79952701 79952741 41 TGCCTGCAGCACCCCGGCGGGGCCACCCCAGTCTGCGTGTA TGCCTGCAGCACCCCGGCGTGGCCACCCCAGTCTGCGTGTA < 41bp 0.495983265702071 0.813713418098037 NA NA prediction 0.627426836196074 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79952721 chr17:79952720 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_12544 0 0 1 0 2 ASPSCR1 chr17:79952754 5'GT 79952754 Upstream 35bp 11880 chrX 153695648 153695648 1 + G T LGG 153695649 + 153695629 153695669 41 CTTGGGCGGCCCCAGCCTCGGGCGCAAGGCGAGCACCCTGA CTTGGGCGGCCCCAGCCTCTGGCGCAAGGCGAGCACCCTGA < 41bp 0.506984720521401 0.82064681197641 NA NA prediction 0.627324182910018 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695649 chrX:153695648 nonsynonymous SNV 0.552 0 20 hm7G_associated_SNPs_12546 0 0 1 0 1 PLXNA3 chrX:153695575 3'AG 153695575 Downstream 74bp 11881 chr12 112191590 112191590 1 + G T LUAD 112191591 + 112191571 112191611 41 GACAGGTGAAGTCCCGCTTGGCTTTTGGGAAGCCCCTGGTG GACAGGTGAAGTCCCGCTTTGCTTTTGGGAAGCCCCTGGTG < 41bp 0.496853121653301 0.813596216661707 NA NA prediction 0.627192433323414 Functional Gain - ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112191591 chr12:112191590 nonsynonymous SNV 0.714 1 20 hm7G_associated_SNPs_12547 0 0 1 0 1 ACAD10 chr12:112191576 3'AG 112191576 Downstream 15bp 11882 chr3 12866991 12866991 1 + G T UCEC 12866992 + 12866972 12867012 41 AGTTCATGGAGAGCCTGCAGGACCCAGACCTGAACGTGCGC AGTTCATGGAGAGCCTGCATGACCCAGACCTGAACGTGCGC < 41bp 0.499087393846717 0.813447107077398 NA NA prediction 0.626894214154797 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12866992 chr3:12866991 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_12548 0 0 0 0 1 CAND2 chr3:12866969 3'AG 12866969 Downstream 23bp 11883 chr7 31104514 31104514 1 + G T UCEC 31104515 + 31104495 31104535 41 TGCCTGGAGAAGATCCAGAGGGCCAATGAGCTGATGGGCTT TGCCTGGAGAAGATCCAGATGGCCAATGAGCTGATGGGCTT < 41bp 0.510754025847344 0.824142717314551 NA NA prediction 0.626777382934413 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31104515 chr7:31104514 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12549 0 0 0 0 2 ADCYAP1R1 chr7:31104447 3'AG 31104447 Downstream 68bp 11884 chr7 31104514 31104514 1 + G T UCEC 31104515 + 31104495 31104535 41 TGCCTGGAGAAGATCCAGAGGGCCAATGAGCTGATGGGCTT TGCCTGGAGAAGATCCAGATGGCCAATGAGCTGATGGGCTT < 41bp 0.510754025847344 0.824142717314551 NA NA prediction 0.626777382934413 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31104515 chr7:31104514 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12549 0 0 0 0 2 ADCYAP1R1 chr7:31104552 5'GT 31104552 Upstream 39bp 11885 chr12 49950253 49950253 1 + G T UCEC 49950254 + 49950234 49950274 41 TAGCAGCAGCCCCTCCCCTGGACCAGGTACCAGGGCCCCGG TAGCAGCAGCCCCTCCCCTTGACCAGGTACCAGGGCCCCGG < 41bp 0.503794431192552 0.817063811065079 NA NA prediction 0.626538759745053 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49950254 chr12:49950253 stopgain 0.877 0 20 hm7G_associated_SNPs_12551 0 0 0 0 1 KCNH3 chr12:49950259 5'GT 49950259 Upstream 7bp 11886 chr17 45369522 45369522 1 + G T UCEC 45369523 + 45369503 45369543 41 AGGTGAGCTTCAGCATTGAGGCCAAGGTGCGAGGCTGTCCC AGGTGAGCTTCAGCATTGATGCCAAGGTGCGAGGCTGTCCC < 41bp 0.502464141166985 0.815728005779429 NA NA prediction 0.626527729224887 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45369523 chr17:45369522 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12552 0 0 0 0 1 ITGB3 chr17:45369505 3'AG 45369505 Downstream 18bp 11887 chr11 33090338 33090338 1 + G T STAD 33090339 + 33090319 33090359 41 CTCCCTTCACCACGGACAAGGAGACCGTGCTCAAGGGCCAG CTCCCTTCACCACGGACAATGAGACCGTGCTCAAGGGCCAG < 41bp 0.493939614739207 0.813191058869444 NA NA prediction 0.626382117738888 Functional Gain - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33090339 chr11:33090338 nonsynonymous SNV 0.607 1 20 hm7G_associated_SNPs_12553 0 0 0 0 1 TCP11L1 chr11:33090405 5'GT 33090405 Upstream 68bp 11888 chr17 61769725 61769725 1 + G T LUAD 61769726 + 61769706 61769746 41 GTCACTGGCACACCCTACTGGATGAGCCCTGAGGTGATCAG GTCACTGGCACACCCTACTTGATGAGCCCTGAGGTGATCAG < 41bp 0.498116392180541 0.813174597704731 NA NA prediction 0.626349195409462 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61769726 chr17:61769725 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12555 0 0 1 0 1 MAP3K3 chr17:61769779 5'GT 61769779 Upstream 55bp 11889 chr16 1550120 1550120 1 + G T HNSC 1550121 + 1550101 1550141 41 CCATGCTGCAGAGCCTGCTGGGCCATCTGGCCATGGACAGC CCATGCTGCAGAGCCTGCTTGGCCATCTGGCCATGGACAGC < 41bp 0.486371873584534 0.813162377590256 NA NA prediction 0.626324755180513 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550121 chr16:1550120 synonymous SNV . 0 20 hm7G_associated_SNPs_12556 0 0 0 0 2 TELO2 chr16:1550097 3'AG 1550097 Downstream 24bp 11890 chr16 1550120 1550120 1 + G T HNSC 1550121 + 1550101 1550141 41 CCATGCTGCAGAGCCTGCTGGGCCATCTGGCCATGGACAGC CCATGCTGCAGAGCCTGCTTGGCCATCTGGCCATGGACAGC < 41bp 0.486371873584534 0.813162377590256 NA NA prediction 0.626324755180513 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550121 chr16:1550120 synonymous SNV . 0 20 hm7G_associated_SNPs_12556 0 0 0 0 2 TELO2 chr16:1550165 5'GT 1550165 Upstream 46bp 11891 chr2 231264881 231264881 1 + G T LUAD 231264882 + 231264862 231264902 41 TGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTGCGACA TGAGGTGTGCCGGGACGGATGGGAGCTGTTCTGTTGCGACA < 41bp 0.505873807765674 0.819020718778381 NA NA prediction 0.626293822025414 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231264882 chr2:231264881 nonsynonymous SNV 0.010 4 20 hm7G_associated_SNPs_12557 0 0 0 0 2 SP140L chr2:231264842 3'AG 231264842 Downstream 40bp 11892 chr2 231264881 231264881 1 + G T LUAD 231264882 + 231264862 231264902 41 TGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTGCGACA TGAGGTGTGCCGGGACGGATGGGAGCTGTTCTGTTGCGACA < 41bp 0.505873807765674 0.819020718778381 NA NA prediction 0.626293822025414 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231264882 chr2:231264881 nonsynonymous SNV 0.010 4 20 hm7G_associated_SNPs_12557 0 0 0 0 2 SP140L chr2:231264957 5'GT 231264957 Upstream 77bp 11893 chr5 149584462 149584462 1 + G T LUSC 149584463 + 149584443 149584483 41 CTCTACTTCAGGGCCTGCTGGCTGTTCCTGTCCCCAGCCAC CTCTACTTCAGGGCCTGCTTGCTGTTCCTGTCCCCAGCCAC < 41bp 0.505820029774635 0.818956736423045 NA NA prediction 0.626273413296821 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149584463 chr5:149584462 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12558 0 0 0 0 2 SLC6A7 chr5:149584390 3'AG 149584390 Downstream 73bp 11894 chr5 149584462 149584462 1 + G T LUSC 149584463 + 149584443 149584483 41 CTCTACTTCAGGGCCTGCTGGCTGTTCCTGTCCCCAGCCAC CTCTACTTCAGGGCCTGCTTGCTGTTCCTGTCCCCAGCCAC < 41bp 0.505820029774635 0.818956736423045 NA NA prediction 0.626273413296821 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149584463 chr5:149584462 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12558 0 0 0 0 2 SLC6A7 chr5:149584490 5'GT 149584490 Upstream 29bp 11895 chr1 12169627 12169627 1 + G T LUSC 12169628 + 12169608 12169648 41 CTGTCCCCCCTGCAGGCACGGCGCAGAAGAACACGGTCTGT CTGTCCCCCCTGCAGGCACTGCGCAGAAGAACACGGTCTGT < 41bp 0.501136143352138 0.814266082660944 NA NA prediction 0.626259878617612 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12169628 chr1:12169627 synonymous SNV . 0 20 hm7G_associated_SNPs_12559 0 0 0 0 2 TNFRSF8 chr1:12169623 3'AG 12169623 Downstream 5bp 11896 chr1 12169627 12169627 1 + G T LUSC 12169628 + 12169608 12169648 41 CTGTCCCCCCTGCAGGCACGGCGCAGAAGAACACGGTCTGT CTGTCCCCCCTGCAGGCACTGCGCAGAAGAACACGGTCTGT < 41bp 0.501136143352138 0.814266082660944 NA NA prediction 0.626259878617612 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12169628 chr1:12169627 synonymous SNV . 0 20 hm7G_associated_SNPs_12559 0 0 0 0 2 TNFRSF8 chr1:12169713 5'GT 12169713 Upstream 87bp 11897 chr6 348110 348110 1 + G T LUAD 348111 + 348091 348131 41 TTGGCCCCGCAGCCTGGCCGGGGTCTCCAGGAGCGTGACAC TTGGCCCCGCAGCCTGGCCTGGGTCTCCAGGAGCGTGACAC < 41bp 0.494615668229895 0.81310308429591 NA NA prediction 0.626206168591819 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348111 chr6:348110 nonsynonymous SNV 0.925 5 20 hm7G_associated_SNPs_12562 0 0 1 0 1 DUSP22 chr6:348103 3'AG 348103 Downstream 8bp 11898 chr2 233527596 233527596 1 + G T BLCA 233527597 + 233527577 233527617 41 GGGCCCCCCAGACCCACCTGGGCCTGAAGAGCATGATCAAG GGGCCCCCCAGACCCACCTTGGCCTGAAGAGCATGATCAAG < 41bp 0.484402670100035 0.812989277973248 NA NA prediction 0.625978555946495 Functional Gain - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233527597 chr2:233527596 synonymous SNV . 0 20 hm7G_associated_SNPs_12563 0 0 1 0 2 EFHD1 chr2:233527512 3'AG 233527512 Downstream 85bp 11899 chr2 233527596 233527596 1 + G T BLCA 233527597 + 233527577 233527617 41 GGGCCCCCCAGACCCACCTGGGCCTGAAGAGCATGATCAAG GGGCCCCCCAGACCCACCTTGGCCTGAAGAGCATGATCAAG < 41bp 0.484402670100035 0.812989277973248 NA NA prediction 0.625978555946495 Functional Gain - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233527597 chr2:233527596 synonymous SNV . 0 20 hm7G_associated_SNPs_12563 0 0 1 0 2 EFHD1 chr2:233527659 5'GT 233527659 Upstream 64bp 11900 chr16 30992103 30992103 1 + G T PRAD 30992104 + 30992084 30992124 41 CGCCGGTCCGAGCAGCGGCGGCTGCTGAGCGCCATCGGTAC CGCCGGTCCGAGCAGCGGCTGCTGCTGAGCGCCATCGGTAC < 41bp 0.496470031145053 0.81296809775978 NA NA prediction 0.625936195519561 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30992104 chr16:30992103 nonsynonymous SNV 0.226 5 20 hm7G_associated_SNPs_12564 0 0 1 0 2 SETD1A chr16:30992060 3'AG 30992060 Downstream 44bp 11901 chr16 30992103 30992103 1 + G T PRAD 30992104 + 30992084 30992124 41 CGCCGGTCCGAGCAGCGGCGGCTGCTGAGCGCCATCGGTAC CGCCGGTCCGAGCAGCGGCTGCTGCTGAGCGCCATCGGTAC < 41bp 0.496470031145053 0.81296809775978 NA NA prediction 0.625936195519561 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30992104 chr16:30992103 nonsynonymous SNV 0.226 5 20 hm7G_associated_SNPs_12564 0 0 1 0 2 SETD1A chr16:30992170 5'GT 30992170 Upstream 68bp 11902 chr1 151502465 151502465 1 + G T LUAD 151502466 + 151502446 151502486 41 CGACGCTTCGGGAGACCCAGGAGGAAAATGACGAATTCCGC CGACGCTTCGGGAGACCCATGAGGAAAATGACGAATTCCGC < 41bp 0.499390951217715 0.812941097278052 NA NA prediction 0.625882194556105 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151502466 chr1:151502465 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12565 0 0 0 0 1 CGN chr1:151502385 3'AG 151502385 Downstream 81bp 11903 chr6 18215342 18215342 1 + G T PAAD 18215343 + 18215323 18215363 41 AGTGCATGGCCACGCTCCGGGAGCTGTTCAAGGAGCAGGTG AGTGCATGGCCACGCTCCGTGAGCTGTTCAAGGAGCAGGTG < 41bp 0.499990893838649 0.812911617197638 NA NA prediction 0.625823234395276 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18215343 chr6:18215342 synonymous SNV . 0 20 hm7G_associated_SNPs_12566 0 0 1 0 1 KDM1B chr6:18215360 5'GT 18215360 Upstream 19bp 11904 chr7 6057486 6057486 1 + G T OV 6057487 + 6057467 6057507 41 TCGTGATCAACGCAAACCCGGCCTCCCCTCCCCTCTCCCTG TCGTGATCAACGCAAACCCTGCCTCCCCTCCCCTCTCCCTG < 41bp 0.517998097527175 0.830901422871932 NA NA prediction 0.625806650689515 Functional Gain - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6057487 chr7:6057486 synonymous SNV . 0 20 hm7G_associated_SNPs_12567 0 0 1 0 1 AIMP2 chr7:6057445 3'AG 6057445 Downstream 42bp 11905 chr12 7343827 7343827 1 + G T LIHC 7343828 + 7343808 7343848 41 TTCCCTTCTGGCAGTTGGTGGCTGAATTCCTGCAGGACCAG TTCCCTTCTGGCAGTTGGTTGCTGAATTCCTGCAGGACCAG < 41bp 0.509785837946873 0.822685002718833 NA NA prediction 0.62579832954392 Functional Gain - PEX5 ENSG00000139197 CDS Human protein_coding chr12:7343828 chr12:7343827 synonymous SNV . 0 20 hm7G_associated_SNPs_12568 0 0 1 0 1 PEX5 chr12:7343822 3'AG 7343822 Downstream 6bp 11906 chr15 74239489 74239489 1 + G T SARC 74239490 + 74239470 74239510 41 AGGTGGCCGAGGGCCACAAGGCCAGTTTCTGCCTGGAGGAC AGGTGGCCGAGGGCCACAATGCCAGTTTCTGCCTGGAGGAC < 41bp 0.512474054600024 0.825312776034374 NA NA prediction 0.625677442868702 Functional Gain - LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74239490 chr15:74239489 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12570 0 0 0 0 2 LOXL1 chr15:74239408 3'AG 74239408 Downstream 82bp 11907 chr15 74239489 74239489 1 + G T SARC 74239490 + 74239470 74239510 41 AGGTGGCCGAGGGCCACAAGGCCAGTTTCTGCCTGGAGGAC AGGTGGCCGAGGGCCACAATGCCAGTTTCTGCCTGGAGGAC < 41bp 0.512474054600024 0.825312776034374 NA NA prediction 0.625677442868702 Functional Gain - LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74239490 chr15:74239489 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12570 0 0 0 0 2 LOXL1 chr15:74239564 5'GT 74239564 Upstream 76bp 11908 chr16 1824320 1824320 1 + G T UCEC 1824321 + 1824301 1824341 41 TGCTGCTGCTGGAGCCCGAGGAGTTTCTGCAGGGCGTCGCC TGCTGCTGCTGGAGCCCGATGAGTTTCTGCAGGGCGTCGCC < 41bp 0.49320782396928 0.812795229138988 NA NA prediction 0.625590458277977 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1824321 chr16:1824320 nonsynonymous SNV 0.044 0 20 hm7G_associated_SNPs_12571 0 0 1 0 2 EME2 chr16:1824261 3'AG 1824261 Downstream 60bp 11909 chr16 1824320 1824320 1 + G T UCEC 1824321 + 1824301 1824341 41 TGCTGCTGCTGGAGCCCGAGGAGTTTCTGCAGGGCGTCGCC TGCTGCTGCTGGAGCCCGATGAGTTTCTGCAGGGCGTCGCC < 41bp 0.49320782396928 0.812795229138988 NA NA prediction 0.625590458277977 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1824321 chr16:1824320 nonsynonymous SNV 0.044 0 20 hm7G_associated_SNPs_12571 0 0 1 0 2 EME2 chr16:1824353 5'GT 1824353 Upstream 34bp 11910 chr16 1550635 1550635 1 + G T LUAD 1550636 + 1550616 1550656 41 GCCCCCCGTGCGACGCCTGGGCATGATCGTGGCAGAGGTCG GCCCCCCGTGCGACGCCTGTGCATGATCGTGGCAGAGGTCG < 41bp 0.516727321218497 0.829509230399393 NA NA prediction 0.625563818361792 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550636 chr16:1550635 nonsynonymous SNV 0.634 4 20 hm7G_associated_SNPs_12572 0 0 0 0 1 TELO2 chr16:1550564 3'AG 1550564 Downstream 72bp 11911 chr20 30409446 30409446 1 + G T UCEC 30409447 + 30409427 30409467 41 TGCAAGGGGACACCTCGAGGGGGATTGAGTTCCAGGCTGTT TGCAAGGGGACACCTCGAGTGGGATTGAGTTCCAGGCTGTT < 41bp 0.487101012303644 0.812709248705817 NA NA prediction 0.625418497411633 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30409447 chr20:30409446 nonsynonymous SNV 0.199 0 20 hm7G_associated_SNPs_12573 0 0 0 0 1 MYLK2 chr20:30409540 5'GT 30409540 Upstream 95bp 11912 chr19 7622129 7622129 1 + G T LUAD 7622130 + 7622110 7622150 41 CTGTGCGACCCCAAGGACGGGCACCTACTCATGGATGGCGG CTGTGCGACCCCAAGGACGTGCACCTACTCATGGATGGCGG < 41bp 0.503876539624765 0.81655499853359 NA NA prediction 0.62535691781765 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7622130 chr19:7622129 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_12574 0 0 1 0 1 PNPLA6 chr19:7622054 3'AG 7622054 Downstream 76bp 11913 chr17 40705188 40705188 1 + G T COAD 40705189 + 40705169 40705209 41 CACAGGGCCGGCTGTGGGAGGCGGCCCGGGCCCTGGCATGC CACAGGGCCGGCTGTGGGATGCGGCCCGGGCCCTGGCATGC < 41bp 0.510591310248762 0.823230458666062 NA NA prediction 0.6252782968346 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705189 chr17:40705188 nonsynonymous SNV 0.077 5 20 hm7G_associated_SNPs_12576 0 0 0 0 1 HSD17B1 chr17:40705142 3'AG 40705142 Downstream 47bp 11914 chr22 43870794 43870794 1 + G T LUSC 43870795 + 43870775 43870815 41 CCAACTGCATCTACCTTCAGGACTCGGAGGTCACCGTGCGG CCAACTGCATCTACCTTCATGACTCGGAGGTCACCGTGCGG < 41bp 0.506253453591869 0.818824550492109 NA NA prediction 0.625142193800478 Functional Gain - MPPED1 ENSG00000186732 CDS Human protein_coding chr22:43870795 chr22:43870794 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12577 0 0 0 0 1 MPPED1 chr22:43870841 5'GT 43870841 Upstream 48bp 11915 chr1 12262060 12262060 1 + G T BLCA 12262061 + 12262041 12262081 41 TAAGGCCCGGGGTACACAGGGCCCCGAGCAGCAGCACCTGC TAAGGCCCGGGGTACACAGTGCCCCGAGCAGCAGCACCTGC < 41bp 0.514518161098946 0.82708113712616 NA NA prediction 0.625125952054428 Functional Gain - TNFRSF1B ENSG00000028137 CDS Human protein_coding chr1:12262061 chr1:12262060 nonsynonymous SNV 0.010 3 20 hm7G_associated_SNPs_12578 0 0 0 0 1 TNFRSF1B chr1:12262024 3'AG 12262024 Downstream 37bp 11916 chr1 175049360 175049360 1 + G T LUAD 175049361 + 175049341 175049381 41 ATTCTCTGCTGGTGAGCTGGGAGCCCTCCAGCCAGGTGGAT ATTCTCTGCTGGTGAGCTGTGAGCCCTCCAGCCAGGTGGAT < 41bp 0.494255557516302 0.812533783632029 NA NA prediction 0.625067567264058 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175049361 chr1:175049360 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12579 0 0 0 0 1 TNN chr1:175049299 3'AG 175049299 Downstream 62bp 11917 chr8 22474994 22474994 1 + G T STAD 22474995 + 22474975 22475015 41 GAGGAAGAAGAAAAACCCCGGGGCGAGGCTTCTGAGGACCT GAGGAAGAAGAAAAACCCCTGGGCGAGGCTTCTGAGGACCT < 41bp 0.496121124106599 0.812515043046029 NA NA prediction 0.625030086092059 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22474995 chr8:22474994 nonsynonymous SNV 0.437 1 20 hm7G_associated_SNPs_12580 0 0 1 0 2 CCAR2 chr8:22474933 3'AG 22474933 Downstream 62bp 11918 chr8 22474994 22474994 1 + G T STAD 22474995 + 22474975 22475015 41 GAGGAAGAAGAAAAACCCCGGGGCGAGGCTTCTGAGGACCT GAGGAAGAAGAAAAACCCCTGGGCGAGGCTTCTGAGGACCT < 41bp 0.496121124106599 0.812515043046029 NA NA prediction 0.625030086092059 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22474995 chr8:22474994 nonsynonymous SNV 0.437 1 20 hm7G_associated_SNPs_12580 0 0 1 0 2 CCAR2 chr8:22475077 5'GT 22475077 Upstream 84bp 11919 chr2 242684270 242684270 1 + G T LUSC 242684271 + 242684251 242684291 41 TGTGTCCACCCAAGCCCAGGGCTGTGAACGTGGCTTTCCTC TGTGTCCACCCAAGCCCAGTGCTGTGAACGTGGCTTTCCTC < 41bp 0.514821627479395 0.827310681259888 NA NA prediction 0.624978107560986 Functional Gain - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242684271 chr2:242684270 nonsynonymous SNV 0.213 1 20 hm7G_associated_SNPs_12581 0 0 1 0 1 D2HGDH chr2:242684292 5'GT 242684292 Upstream 23bp 11920 chr2 242148759 242148759 1 + G T UCEC 242148760 + 242148740 242148780 41 GCTTGTTCATGGCACTGTGGGCCGTGCTGCTGCTGGAGTAC GCTTGTTCATGGCACTGTGTGCCGTGCTGCTGCTGGAGTAC < 41bp 0.484080879623782 0.812400638863903 NA NA prediction 0.624801277727806 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242148760 chr2:242148759 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_12583 0 0 0 0 2 ANO7 chr2:242148700 3'AG 242148700 Downstream 60bp 11921 chr2 242148759 242148759 1 + G T UCEC 242148760 + 242148740 242148780 41 GCTTGTTCATGGCACTGTGGGCCGTGCTGCTGCTGGAGTAC GCTTGTTCATGGCACTGTGTGCCGTGCTGCTGCTGGAGTAC < 41bp 0.484080879623782 0.812400638863903 NA NA prediction 0.624801277727806 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242148760 chr2:242148759 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_12583 0 0 0 0 2 ANO7 chr2:242148843 5'GT 242148843 Upstream 85bp 11922 chr5 32724853 32724853 1 + G T LUAD 32724854 + 32724834 32724874 41 TCCGGAGCATCATGCTGGTGGCGCACAGGCATGGCATGACC TCCGGAGCATCATGCTGGTTGCGCACAGGCATGGCATGACC < 41bp 0.504115979386746 0.816486392575493 NA NA prediction 0.624740826377493 Functional Gain - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32724854 chr5:32724853 synonymous SNV . 0 20 hm7G_associated_SNPs_12584 0 0 0 0 2 NPR3 chr5:32724804 3'AG 32724804 Downstream 50bp 11923 chr5 32724853 32724853 1 + G T LUAD 32724854 + 32724834 32724874 41 TCCGGAGCATCATGCTGGTGGCGCACAGGCATGGCATGACC TCCGGAGCATCATGCTGGTTGCGCACAGGCATGGCATGACC < 41bp 0.504115979386746 0.816486392575493 NA NA prediction 0.624740826377493 Functional Gain - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32724854 chr5:32724853 synonymous SNV . 0 20 hm7G_associated_SNPs_12584 0 0 0 0 2 NPR3 chr5:32724926 5'GT 32724926 Upstream 74bp 11924 chr22 30766362 30766362 1 + G T UCEC 30766363 + 30766343 30766383 41 CCTCCAAGCCCACCACCAAGGGCGAGCCAGCCAGGAGCCCT CCTCCAAGCCCACCACCAATGGCGAGCCAGCCAGGAGCCCT < 41bp 0.491294494336132 0.812326916863786 NA NA prediction 0.624653833727571 Functional Gain - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30766363 chr22:30766362 nonsynonymous SNV 0.959 1 20 hm7G_associated_SNPs_12586 0 0 0 0 1 CCDC157 chr22:30766315 3'AG 30766315 Downstream 48bp 11925 chr5 148695817 148695817 1 + G T LUAD 148695818 + 148695798 148695838 41 TCTCCAAGAAGAAGACACTGGCCGATGACCTGCAGACGTCC TCTCCAAGAAGAAGACACTTGCCGATGACCTGCAGACGTCC < 41bp 0.517975811599312 0.830298464001364 NA NA prediction 0.624645304804104 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695818 chr5:148695817 synonymous SNV . 0 20 hm7G_associated_SNPs_12587 0 0 0 0 1 AFAP1L1 chr5:148695866 5'GT 148695866 Upstream 50bp 11926 chr17 37815758 37815758 1 + G T STAD 37815759 + 37815739 37815779 41 AGGAGGCCACGGCAGTGGTGGACCAGATCTTGGCCCAGGAA AGGAGGCCACGGCAGTGGTTGACCAGATCTTGGCCCAGGAA < 41bp 0.511137530482342 0.82340519127644 NA NA prediction 0.624535321588197 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815759 chr17:37815758 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_12588 0 0 1 0 2 STARD3 chr17:37815714 3'AG 37815714 Downstream 45bp 11927 chr17 37815758 37815758 1 + G T STAD 37815759 + 37815739 37815779 41 AGGAGGCCACGGCAGTGGTGGACCAGATCTTGGCCCAGGAA AGGAGGCCACGGCAGTGGTTGACCAGATCTTGGCCCAGGAA < 41bp 0.511137530482342 0.82340519127644 NA NA prediction 0.624535321588197 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815759 chr17:37815758 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_12588 0 0 1 0 2 STARD3 chr17:37815806 5'GT 37815806 Upstream 49bp 11928 chr17 33477122 33477122 1 + G T UCEC 33477123 + 33477103 33477143 41 ATCGGCGATGCCAGGCACTGGAGCACCTGGGGAAGCTGGAC ATCGGCGATGCCAGGCACTTGAGCACCTGGGGAAGCTGGAC < 41bp 0.514133019566359 0.826325044659213 NA NA prediction 0.624384050185707 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33477123 chr17:33477122 synonymous SNV . 0 20 hm7G_associated_SNPs_12590 0 0 0 0 1 UNC45B chr17:33477067 3'AG 33477067 Downstream 56bp 11929 chr9 130251749 130251749 1 + G T STAD 130251750 + 130251730 130251770 41 TGCAGAAGGCTGCGTTCGAGGCACTCCAGGTGAAGAAAGAC TGCAGAAGGCTGCGTTCGATGCACTCCAGGTGAAGAAAGAC < 41bp 0.526756824111093 0.838872558555415 NA NA prediction 0.624231468888643 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130251750 chr9:130251749 nonsynonymous SNV 0.963 3 20 hm7G_associated_SNPs_12593 0 0 1 0 2 LRSAM1 chr9:130251723 3'AG 130251723 Downstream 27bp 11930 chr9 130251749 130251749 1 + G T STAD 130251750 + 130251730 130251770 41 TGCAGAAGGCTGCGTTCGAGGCACTCCAGGTGAAGAAAGAC TGCAGAAGGCTGCGTTCGATGCACTCCAGGTGAAGAAAGAC < 41bp 0.526756824111093 0.838872558555415 NA NA prediction 0.624231468888643 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130251750 chr9:130251749 nonsynonymous SNV 0.963 3 20 hm7G_associated_SNPs_12593 0 0 1 0 2 LRSAM1 chr9:130251797 5'GT 130251797 Upstream 49bp 11931 chr11 823761 823761 1 + G T SARC 823762 + 823742 823782 41 CCCACGGCCCAGAGGACAAGGACCAGGCAGTGGAGAGCGCC CCCACGGCCCAGAGGACAATGACCAGGCAGTGGAGAGCGCC < 41bp 0.50422051829461 0.816326978510585 NA NA prediction 0.62421292043195 Functional Gain - PNPLA2 ENSG00000177666 CDS Human protein_coding chr11:823762 chr11:823761 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_12594 0 0 0 0 1 PNPLA2 chr11:823694 3'AG 823694 Downstream 68bp 11932 chr7 148904483 148904483 1 + G T UCEC 148904484 + 148904464 148904504 41 AGCCAGATGCTCCAGTCCAGGCTGAGCCCAGGGAAGAACCT AGCCAGATGCTCCAGTCCATGCTGAGCCCAGGGAAGAACCT < 41bp 0.508491588772093 0.820560936051239 NA NA prediction 0.624138694558293 Functional Gain - ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148904484 chr7:148904483 nonsynonymous SNV 0.017 1 20 hm7G_associated_SNPs_12595 0 0 0 0 2 ZNF282 chr7:148904443 3'AG 148904443 Downstream 41bp 11933 chr7 148904483 148904483 1 + G T UCEC 148904484 + 148904464 148904504 41 AGCCAGATGCTCCAGTCCAGGCTGAGCCCAGGGAAGAACCT AGCCAGATGCTCCAGTCCATGCTGAGCCCAGGGAAGAACCT < 41bp 0.508491588772093 0.820560936051239 NA NA prediction 0.624138694558293 Functional Gain - ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148904484 chr7:148904483 nonsynonymous SNV 0.017 1 20 hm7G_associated_SNPs_12595 0 0 0 0 2 ZNF282 chr7:148904562 5'GT 148904562 Upstream 80bp 11934 chr9 27197511 27197511 1 + G T UCEC 27197512 + 27197492 27197532 41 CTTAACAACTTACATCCCAGGGAGCAGTACGTGGTCCGAGC CTTAACAACTTACATCCCATGGAGCAGTACGTGGTCCGAGC < 41bp 0.498880994695648 0.812045722117408 NA NA prediction 0.624091444234817 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27197512 chr9:27197511 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12596 0 0 0 0 1 TEK chr9:27197597 5'GT 27197597 Upstream 87bp 11935 chr13 52313221 52313221 1 + G T UCEC 52313222 + 52313202 52313242 41 TGTTGGGACCCAGTCCAGCGGGTGTTGTTCTCAGGCAGTTC TGTTGGGACCCAGTCCAGCTGGTGTTGTTCTCAGGCAGTTC < 41bp 0.490465122405973 0.812044850167578 NA NA prediction 0.624089700335157 Functional Gain - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52313222 chr13:52313221 nonsynonymous SNV 0.826 4 20 hm7G_associated_SNPs_12597 0 0 0 1 2 WDFY2 chr13:52313185 3'AG 52313185 Downstream 37bp 11936 chr13 52313221 52313221 1 + G T UCEC 52313222 + 52313202 52313242 41 TGTTGGGACCCAGTCCAGCGGGTGTTGTTCTCAGGCAGTTC TGTTGGGACCCAGTCCAGCTGGTGTTGTTCTCAGGCAGTTC < 41bp 0.490465122405973 0.812044850167578 NA NA prediction 0.624089700335157 Functional Gain - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52313222 chr13:52313221 nonsynonymous SNV 0.826 4 20 hm7G_associated_SNPs_12597 0 0 0 1 2 WDFY2 chr13:52313311 5'GT 52313311 Upstream 91bp 11937 chr16 77229444 77229444 1 + G T SARC 77229445 + 77229425 77229465 41 ATGGCAGCCCTGAGCTAGAGGCCCCCTACAGCAGAGAGGAG ATGGCAGCCCTGAGCTAGATGCCCCCTACAGCAGAGAGGAG < 41bp 0.493894155955583 0.811962202778505 NA NA prediction 0.62392440555701 Functional Gain - MON1B ENSG00000103111 CDS Human protein_coding chr16:77229445 chr16:77229444 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12598 0 0 1 0 1 MON1B chr16:77229432 3'AG 77229432 Downstream 13bp 11938 chr16 4644782 4644782 1 + G T rs575780519 4644783 + 4644763 4644803 41 AGCGTGGGGCTCAGCCCTTGGCCGTCGCAAAGGAGCTGGCA AGCGTGGGGCTCAGCCCTTTGCCGTCGCAAAGGAGCTGGCA < 41bp 0.510968470889265 0.822921053617763 NA NA prediction 0.623905165456996 Functional Gain - C16orf96 ENSG00000205832 CDS Human protein_coding chr16:4644783 chr16:4644782 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_12599 0 0 0 0 2 C16orf96 chr16:4644705 3'AG 4644705 Downstream 78bp 11939 chr16 4644782 4644782 1 + G T rs575780519 4644783 + 4644763 4644803 41 AGCGTGGGGCTCAGCCCTTGGCCGTCGCAAAGGAGCTGGCA AGCGTGGGGCTCAGCCCTTTGCCGTCGCAAAGGAGCTGGCA < 41bp 0.510968470889265 0.822921053617763 NA NA prediction 0.623905165456996 Functional Gain - C16orf96 ENSG00000205832 CDS Human protein_coding chr16:4644783 chr16:4644782 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_12599 0 0 0 0 2 C16orf96 chr16:4644804 5'GT 4644804 Upstream 23bp 11940 chr10 99619229 99619229 1 + G T UCEC 99619230 + 99619210 99619250 41 CTCAGGTCCACAATCTGCAGGAGCTCCGGCGAAGTGCCTCA CTCAGGTCCACAATCTGCATGAGCTCCGGCGAAGTGCCTCA < 41bp 0.495340691230884 0.811928994623192 NA NA prediction 0.623857989246384 Functional Gain - GOLGA7B ENSG00000155265 CDS Human protein_coding chr10:99619230 chr10:99619229 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12600 0 0 0 0 1 GOLGA7B chr10:99619215 3'AG 99619215 Downstream 15bp 11941 chr15 89392870 89392870 1 + G T STAD 89392871 + 89392851 89392891 41 CCAAGGCCTGCCTGCGGTGGGGACAAGCCAGGCGTGAGAAC CCAAGGCCTGCCTGCGGTGTGGACAAGCCAGGCGTGAGAAC < 41bp 0.486820863133088 0.811910564820126 NA NA prediction 0.623821129640252 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89392871 chr15:89392870 nonsynonymous SNV 0.672 3 20 hm7G_associated_SNPs_12601 0 0 0 0 1 ACAN chr15:89392962 5'GT 89392962 Upstream 93bp 11942 chr19 38774304 38774304 1 + G T KIRP 38774305 + 38774285 38774325 41 AGGTGGTGGGCAGATGCCGGGCCTCCATGCCTAGGTGGTGG AGGTGGTGGGCAGATGCCGTGCCTCCATGCCTAGGTGGTGG < 41bp 0.490287609182821 0.811839770964075 NA NA prediction 0.623679541928151 Functional Gain - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38774305 chr19:38774304 synonymous SNV . 0 20 hm7G_associated_SNPs_12602 0 0 1 0 1 SPINT2 chr19:38774267 3'AG 38774267 Downstream 38bp 11943 chr16 58076196 58076196 1 + G T LUAD 58076197 + 58076177 58076217 41 AACTATCCCATGCCCATCGGGCACTTCTGGCGTGGTCTGCC AACTATCCCATGCCCATCGTGCACTTCTGGCGTGGTCTGCC < 41bp 0.513592727838435 0.825341894990939 NA NA prediction 0.623498334305008 Functional Gain - MMP15 ENSG00000102996 CDS Human protein_coding chr16:58076197 chr16:58076196 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_12603 0 0 1 0 2 MMP15 chr16:58076135 3'AG 58076135 Downstream 62bp 11944 chr16 58076196 58076196 1 + G T LUAD 58076197 + 58076177 58076217 41 AACTATCCCATGCCCATCGGGCACTTCTGGCGTGGTCTGCC AACTATCCCATGCCCATCGTGCACTTCTGGCGTGGTCTGCC < 41bp 0.513592727838435 0.825341894990939 NA NA prediction 0.623498334305008 Functional Gain - MMP15 ENSG00000102996 CDS Human protein_coding chr16:58076197 chr16:58076196 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_12603 0 0 1 0 2 MMP15 chr16:58076273 5'GT 58076273 Upstream 78bp 11945 chr7 143017807 143017807 1 + G T rs10282312 143017808 + 143017788 143017828 41 AAGAAAATTAGGGGAAGACGGGATCTTTCTGGTGCTTCTGG AAGAAAATTAGGGGAAGACTGGATCTTTCTGGTGCTTCTGG < 41bp 0.505725600876967 0.817471492556251 NA NA prediction 0.623491783358568 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143017808 chr7:143017807 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_12604 0 0 0 0 1 CLCN1 chr7:143017757 3'AG 143017757 Downstream 51bp 11946 chr1 26357001 26357001 1 + G T LUAD 26357002 + 26356982 26357022 41 CAGGAGATGTCCCCTGCACGGGTCCTCGCCCTGCGTCAGCA CAGGAGATGTCCCCTGCACTGGTCCTCGCCCTGCGTCAGCA < 41bp 0.487444365139815 0.811736457139142 NA NA prediction 0.623472914278283 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26357002 chr1:26357001 nonsynonymous SNV 0.882 3 20 hm7G_associated_SNPs_12605 0 0 0 0 2 EXTL1 chr1:26356967 3'AG 26356967 Downstream 35bp 11947 chr1 26357001 26357001 1 + G T LUAD 26357002 + 26356982 26357022 41 CAGGAGATGTCCCCTGCACGGGTCCTCGCCCTGCGTCAGCA CAGGAGATGTCCCCTGCACTGGTCCTCGCCCTGCGTCAGCA < 41bp 0.487444365139815 0.811736457139142 NA NA prediction 0.623472914278283 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26357002 chr1:26357001 nonsynonymous SNV 0.882 3 20 hm7G_associated_SNPs_12605 0 0 0 0 2 EXTL1 chr1:26357086 5'GT 26357086 Upstream 86bp 11948 chr22 38211201 38211201 1 + G T CESC 38211202 + 38211182 38211222 41 GCGACATCGCACCCCTGCAGGAGATCTGCTGCCTCGCCTCT GCGACATCGCACCCCTGCATGAGATCTGCTGCCTCGCCTCT < 41bp 0.493316737990742 0.811727012575053 NA NA prediction 0.623454025150106 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38211202 chr22:38211201 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_12606 0 0 0 0 2 GCAT chr22:38211133 3'AG 38211133 Downstream 69bp 11949 chr22 38211201 38211201 1 + G T CESC 38211202 + 38211182 38211222 41 GCGACATCGCACCCCTGCAGGAGATCTGCTGCCTCGCCTCT GCGACATCGCACCCCTGCATGAGATCTGCTGCCTCGCCTCT < 41bp 0.493316737990742 0.811727012575053 NA NA prediction 0.623454025150106 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38211202 chr22:38211201 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_12606 0 0 0 0 2 GCAT chr22:38211287 5'GT 38211287 Upstream 87bp 11950 chr19 13928081 13928081 1 + G T LUSC 13928082 + 13928062 13928102 41 AACACCGAAGGATGGGTGGGGCACCCCCTGGACCCCATTGG AACACCGAAGGATGGGTGGTGCACCCCCTGGACCCCATTGG < 41bp 0.513289821033896 0.825010080404738 NA NA prediction 0.623440518741685 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13928082 chr19:13928081 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12607 0 0 0 0 2 ZSWIM4 chr19:13928030 3'AG 13928030 Downstream 52bp 11951 chr19 13928081 13928081 1 + G T LUSC 13928082 + 13928062 13928102 41 AACACCGAAGGATGGGTGGGGCACCCCCTGGACCCCATTGG AACACCGAAGGATGGGTGGTGCACCCCCTGGACCCCATTGG < 41bp 0.513289821033896 0.825010080404738 NA NA prediction 0.623440518741685 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13928082 chr19:13928081 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12607 0 0 0 0 2 ZSWIM4 chr19:13928167 5'GT 13928167 Upstream 87bp 11952 chr14 23354194 23354194 1 + G T UCEC 23354195 + 23354175 23354215 41 CACTTTTGGTGGTCTCCAGGGAGACAGTGCTCACGAACCGG CACTTTTGGTGGTCTCCAGTGAGACAGTGCTCACGAACCGG < 41bp 0.505120291875301 0.816817098046052 NA NA prediction 0.623393612341502 Functional Gain - REM2 ENSG00000139890 CDS Human protein_coding chr14:23354195 chr14:23354194 stopgain 0.994 1 20 hm7G_associated_SNPs_12608 0 0 0 0 1 REM2 chr14:23354224 5'GT 23354224 Upstream 31bp 11953 chr19 55805452 55805452 1 + G T HNSC 55805453 + 55805433 55805473 41 CATCCGCATTGCAGACTTCGGCATGGCGTCCCTGCAGGTGG CATCCGCATTGCAGACTTCTGCATGGCGTCCCTGCAGGTGG < 41bp 0.501301982703993 0.812991948812195 NA NA prediction 0.623379932216405 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55805453 chr19:55805452 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_12609 0 0 0 0 2 BRSK1 chr19:55805385 3'AG 55805385 Downstream 68bp 11954 chr19 55805452 55805452 1 + G T HNSC 55805453 + 55805433 55805473 41 CATCCGCATTGCAGACTTCGGCATGGCGTCCCTGCAGGTGG CATCCGCATTGCAGACTTCTGCATGGCGTCCCTGCAGGTGG < 41bp 0.501301982703993 0.812991948812195 NA NA prediction 0.623379932216405 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55805453 chr19:55805452 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_12609 0 0 0 0 2 BRSK1 chr19:55805501 5'GT 55805501 Upstream 50bp 11955 chr22 39125539 39125539 1 + G T LIHC 39125540 + 39125520 39125560 41 AATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACG AATGCAGTCGACGAAAAAGTGCCCCCTGACGAAACGAGACG < 41bp 0.508605529875598 0.820280858924085 NA NA prediction 0.623350658096973 Functional Gain - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39125540 chr22:39125539 nonsynonymous SNV 0.910 2 20 hm7G_associated_SNPs_12610 0 0 1 0 1 GTPBP1 chr22:39125467 3'AG 39125467 Downstream 73bp 11956 chrX 65476106 65476106 1 + G T LUAD 65476107 + 65476087 65476127 41 GGAAAATGTGGCAACCCATGGGTCCCAGGATCCAGGCAGTA GGAAAATGTGGCAACCCATTGGTCCCAGGATCCAGGCAGTA < 41bp 0.506426757586315 0.818033439204893 NA NA prediction 0.623213363237156 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65476107 chrX:65476106 nonsynonymous SNV 0.623 3 20 hm7G_associated_SNPs_12612 0 0 1 0 1 HEPH chrX:65476172 5'GT 65476172 Upstream 67bp 11957 chr2 98349367 98349367 1 + G T LUAD 98349368 + 98349348 98349388 41 TGAGGCCGCGGAAGGAGCAGGGCACATACGCCCTGTCCCTC TGAGGCCGCGGAAGGAGCATGGCACATACGCCCTGTCCCTC < 41bp 0.507954293867733 0.819532650146572 NA NA prediction 0.623156712557677 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98349368 chr2:98349367 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_12613 0 0 0 0 1 ZAP70 chr2:98349346 3'AG 98349346 Downstream 22bp 11958 chr18 2909794 2909794 1 + G T LIHC 2909795 + 2909775 2909815 41 AAAGTGCTGGTGAACGACGGGGATGTTTACAACCCCAGCAC AAAGTGCTGGTGAACGACGTGGATGTTTACAACCCCAGCAC < 41bp 0.50452979505847 0.8160361361173 NA NA prediction 0.62301268211766 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2909795 chr18:2909794 nonsynonymous SNV 0.509 4 20 hm7G_associated_SNPs_12614 0 0 1 0 1 EMILIN2 chr18:2909817 5'GT 2909817 Upstream 24bp 11959 chr14 73721605 73721605 1 + G T LUAD 73721606 + 73721586 73721626 41 GCTCCAAGAGCTGCAGCTCGGGCACTCGGAGGCGACAGGTC GCTCCAAGAGCTGCAGCTCTGGCACTCGGAGGCGACAGGTC < 41bp 0.490390195201124 0.811459654296034 NA NA prediction 0.622919308592069 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73721606 chr14:73721605 synonymous SNV . 0 20 hm7G_associated_SNPs_12616 0 0 1 0 1 PAPLN chr14:73721585 3'AG 73721585 Downstream 21bp 11960 chr19 35791291 35791291 1 + G T LUAD 35791292 + 35791272 35791312 41 GCCAGGACAACCGCACCGTGGGGCTCAGTGTCATGTGTGAG GCCAGGACAACCGCACCGTTGGGCTCAGTGTCATGTGTGAG < 41bp 0.511488283483474 0.822944611282628 NA NA prediction 0.622912655598309 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35791292 chr19:35791291 synonymous SNV . 0 20 hm7G_associated_SNPs_12617 0 0 0 0 1 MAG chr19:35791307 5'GT 35791307 Upstream 17bp 11961 chr15 22929738 22929738 1 + G T SARC 22929739 + 22929719 22929759 41 TGCCATTGAGCGTTTCTGCGGGGAAGTGAGGCGCCTGTGCC TGCCATTGAGCGTTTCTGCTGGGAAGTGAGGCGCCTGTGCC < 41bp 0.508998238651084 0.8203589247926 NA NA prediction 0.622721372283033 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22929739 chr15:22929738 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_12618 0 0 1 0 1 CYFIP1 chr15:22929714 3'AG 22929714 Downstream 25bp 11962 chr16 27363941 27363941 1 + G T LUSC 27363942 + 27363922 27363962 41 AGTCTGGGATTTCCTACAGGGCACGGGTGAGGGCCTGGGCT AGTCTGGGATTTCCTACAGTGCACGGGTGAGGGCCTGGGCT < 41bp 0.486505283688451 0.811352661635806 NA NA prediction 0.622705323271612 Functional Gain - IL4R ENSG00000077238 CDS Human protein_coding chr16:27363942 chr16:27363941 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_12619 0 0 1 0 3 IL4R chr16:27363861 3'AG 27363861 Downstream 81bp 11963 chr16 27363941 27363941 1 + G T LUSC 27363942 + 27363922 27363962 41 AGTCTGGGATTTCCTACAGGGCACGGGTGAGGGCCTGGGCT AGTCTGGGATTTCCTACAGTGCACGGGTGAGGGCCTGGGCT < 41bp 0.486505283688451 0.811352661635806 NA NA prediction 0.622705323271612 Functional Gain - IL4R ENSG00000077238 CDS Human protein_coding chr16:27363942 chr16:27363941 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_12619 0 0 1 0 3 IL4R chr16:27363866 3'AG 27363866 Downstream 76bp 11964 chr16 27363941 27363941 1 + G T LUSC 27363942 + 27363922 27363962 41 AGTCTGGGATTTCCTACAGGGCACGGGTGAGGGCCTGGGCT AGTCTGGGATTTCCTACAGTGCACGGGTGAGGGCCTGGGCT < 41bp 0.486505283688451 0.811352661635806 NA NA prediction 0.622705323271612 Functional Gain - IL4R ENSG00000077238 CDS Human protein_coding chr16:27363942 chr16:27363941 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_12619 0 0 1 0 3 IL4R chr16:27364017 5'GT 27364017 Upstream 77bp 11965 chr19 38897556 38897556 1 + G T UCEC 38897557 + 38897537 38897577 41 CTCCCCACTCCAGGCCCAAGGAGAGGCCATGAGGGCAGTGC CTCCCCACTCCAGGCCCAATGAGAGGCCATGAGGGCAGTGC < 41bp 0.499534129439974 0.811351611249506 NA NA prediction 0.622703222499011 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38897557 chr19:38897556 stopgain 0.944 0 20 hm7G_associated_SNPs_12620 0 0 0 0 1 FAM98C chr19:38897550 3'AG 38897550 Downstream 7bp 11966 chr7 143078840 143078840 1 + G T LUAD 143078841 + 143078821 143078861 41 CAGCGCGCACAGATGGGCCGGGTGGGCGAGATTCCCCCGCC CAGCGCGCACAGATGGGCCTGGTGGGCGAGATTCCCCCGCC < 41bp 0.500746522008544 0.812084530007874 NA NA prediction 0.62267601599866 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143078841 chr7:143078840 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_12621 0 0 1 0 1 ZYX chr7:143078872 5'GT 143078872 Upstream 33bp 11967 chr1 55166854 55166854 1 + G T LUAD 55166855 + 55166835 55166875 41 TCCTGCCCTCCATGGTGAAGGGCCTGAAGAACATGGATGGG TCCTGCCCTCCATGGTGAATGGCCTGAAGAACATGGATGGG < 41bp 0.506583292383633 0.817846467482126 NA NA prediction 0.622526350196984 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55166855 chr1:55166854 nonsynonymous SNV 0.578 3 20 hm7G_associated_SNPs_12623 0 0 0 0 1 MROH7 chr1:55166816 3'AG 55166816 Downstream 39bp 11968 chr1 154403059 154403059 1 + G T CESC 154403060 + 154403040 154403080 41 CCCCATCCCTGACGACAAAGGCTGTGCTCTTGGTGAGGAAG CCCCATCCCTGACGACAAATGCTGTGCTCTTGGTGAGGAAG < 41bp 0.505083816451917 0.816307110094208 NA NA prediction 0.622446587284582 Functional Gain - IL6R ENSG00000160712 CDS Human protein_coding chr1:154403060 chr1:154403059 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_12627 0 0 1 0 1 IL6R chr1:154403082 5'GT 154403082 Upstream 24bp 11969 chr1 65247170 65247170 1 + G T UCEC 65247171 + 65247151 65247191 41 CAGACGGTATGACCATCAAGGGCAGCAAAGTCCAGGTTTCC CAGACGGTATGACCATCAATGGCAGCAAAGTCCAGGTTTCC < 41bp 0.494816918153198 0.811155373797901 NA NA prediction 0.622310747595803 Functional Gain - RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65247171 chr1:65247170 nonsynonymous SNV 0.117 0 20 hm7G_associated_SNPs_12628 0 0 0 0 1 RAVER2 chr1:65247254 5'GT 65247254 Upstream 85bp 11970 chr17 38345180 38345180 1 + G T UCEC 38345181 + 38345161 38345201 41 CTCTTCCGCCACTTCCGCCGGATAGACTCCTGTCTGCAGAC CTCTTCCGCCACTTCCGCCTGATAGACTCCTGTCTGCAGAC < 41bp 0.488567734031706 0.811150015598238 NA NA prediction 0.622300031196477 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38345181 chr17:38345180 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12629 0 0 1 0 1 RAPGEFL1 chr17:38345118 3'AG 38345118 Downstream 63bp 11971 chr19 46205121 46205121 1 + G T THYM 46205122 + 46205102 46205142 41 AGTGATGTACTTCCAACCCGGGGAGCCCTTTGGCTCTGTGG AGTGATGTACTTCCAACCCTGGGAGCCCTTTGGCTCTGTGG < 41bp 0.514545648902049 0.825675023723966 NA NA prediction 0.622258749643834 Functional Gain - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46205122 chr19:46205121 nonsynonymous SNV 0.904 3 20 hm7G_associated_SNPs_12630 0 0 1 0 2 QPCTL chr19:46205056 3'AG 46205056 Downstream 66bp 11972 chr19 46205121 46205121 1 + G T THYM 46205122 + 46205102 46205142 41 AGTGATGTACTTCCAACCCGGGGAGCCCTTTGGCTCTGTGG AGTGATGTACTTCCAACCCTGGGAGCCCTTTGGCTCTGTGG < 41bp 0.514545648902049 0.825675023723966 NA NA prediction 0.622258749643834 Functional Gain - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46205122 chr19:46205121 nonsynonymous SNV 0.904 3 20 hm7G_associated_SNPs_12630 0 0 1 0 2 QPCTL chr19:46205172 5'GT 46205172 Upstream 52bp 11973 chr19 31025821 31025821 1 + G T LUAD 31025822 + 31025802 31025842 41 TGCTTCGCGACAGAAGCCTGGGCTCGGCCATGAAGGACTGC TGCTTCGCGACAGAAGCCTTGGCTCGGCCATGAAGGACTGC < 41bp 0.522458364598455 0.83350517709032 NA NA prediction 0.622093624983729 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:31025822 chr19:31025821 synonymous SNV . 0 20 hm7G_associated_SNPs_12631 0 0 0 0 2 ZNF536 chr19:31025754 3'AG 31025754 Downstream 68bp 11974 chr19 31025821 31025821 1 + G T LUAD 31025822 + 31025802 31025842 41 TGCTTCGCGACAGAAGCCTGGGCTCGGCCATGAAGGACTGC TGCTTCGCGACAGAAGCCTTGGCTCGGCCATGAAGGACTGC < 41bp 0.522458364598455 0.83350517709032 NA NA prediction 0.622093624983729 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:31025822 chr19:31025821 synonymous SNV . 0 20 hm7G_associated_SNPs_12631 0 0 0 0 2 ZNF536 chr19:31025906 5'GT 31025906 Upstream 86bp 11975 chr20 62853332 62853332 1 + G T LIHC 62853333 + 62853313 62853353 41 TTGAGGAGCGGAAGTATCCGGGGGAAGTCACCCTGACCAAC TTGAGGAGCGGAAGTATCCTGGGGAAGTCACCCTGACCAAC < 41bp 0.510048036986463 0.820986571660954 NA NA prediction 0.621877069348983 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62853333 chr20:62853332 synonymous SNV . 0 20 hm7G_associated_SNPs_12632 0 0 0 0 2 MYT1 chr20:62853246 3'AG 62853246 Downstream 87bp 11976 chr20 62853332 62853332 1 + G T LIHC 62853333 + 62853313 62853353 41 TTGAGGAGCGGAAGTATCCGGGGGAAGTCACCCTGACCAAC TTGAGGAGCGGAAGTATCCTGGGGAAGTCACCCTGACCAAC < 41bp 0.510048036986463 0.820986571660954 NA NA prediction 0.621877069348983 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62853333 chr20:62853332 synonymous SNV . 0 20 hm7G_associated_SNPs_12632 0 0 0 0 2 MYT1 chr20:62853400 5'GT 62853400 Upstream 69bp 11977 chrX 18606124 18606124 1 + G T LIHC 18606125 + 18606105 18606145 41 TCGGTGGGCTGTATTCTTGGGGAGCTTAGCGATGGACAGCC TCGGTGGGCTGTATTCTTGTGGAGCTTAGCGATGGACAGCC < 41bp 0.495488079097485 0.810839567970602 NA NA prediction 0.621679135941203 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18606125 chrX:18606124 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_12634 0 0 0 0 1 CDKL5 chrX:18606074 3'AG 18606074 Downstream 51bp 11978 chr8 143559658 143559658 1 + G T LUAD 143559659 + 143559639 143559679 41 ATGCAACGGGCCTTCCTACGGGGGTGCGGAGTGCCAGGGCC ATGCAACGGGCCTTCCTACTGGGGTGCGGAGTGCCAGGGCC < 41bp 0.48720320472403 0.810806878480991 NA NA prediction 0.621613756961982 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143559659 chr8:143559658 nonsynonymous SNV 0.732 3 20 hm7G_associated_SNPs_12635 0 0 0 0 1 ADGRB1 chr8:143559721 5'GT 143559721 Upstream 64bp 11979 chr12 58008358 58008358 1 + G T rs142792300 58008359 + 58008339 58008379 41 AGCCCAAGTCAGAGCATGTGGTGTCAGAGTTTGGGGACAGC AGCCCAAGTCAGAGCATGTTGTGTCAGAGTTTGGGGACAGC < 41bp 0.49788434636425 0.810753178696555 NA NA prediction 0.621506357393111 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58008359 chr12:58008358 synonymous SNV . 0 20 hm7G_associated_SNPs_12636 0 0 1 0 2 ARHGEF25 chr12:58008299 3'AG 58008299 Downstream 60bp 11980 chr12 58008358 58008358 1 + G T rs142792300 58008359 + 58008339 58008379 41 AGCCCAAGTCAGAGCATGTGGTGTCAGAGTTTGGGGACAGC AGCCCAAGTCAGAGCATGTTGTGTCAGAGTTTGGGGACAGC < 41bp 0.49788434636425 0.810753178696555 NA NA prediction 0.621506357393111 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58008359 chr12:58008358 synonymous SNV . 0 20 hm7G_associated_SNPs_12636 0 0 1 0 2 ARHGEF25 chr12:58008388 5'GT 58008388 Upstream 31bp 11981 chr14 76549820 76549820 1 + G T BLCA 76549821 + 76549801 76549841 41 GATGATGTCGGCTGGGACTGGGACCATCTGTTCACTGAGGT GATGATGTCGGCTGGGACTTGGACCATCTGTTCACTGAGGT < 41bp 0.501489509529198 0.8122340853311 NA NA prediction 0.621489151603805 Functional Gain - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76549821 chr14:76549820 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12637 0 0 1 1 1 IFT43 chr14:76549801 3'AG 76549801 Downstream 20bp 11982 chr3 126746904 126746904 1 + G T LUSC 126746905 + 126746885 126746925 41 AGTGAGGACAAGCTCATCCGGCAGCAGATTGACTACAAGAC AGTGAGGACAAGCTCATCCTGCAGCAGATTGACTACAAGAC < 41bp 0.497429226600126 0.810727816809369 NA NA prediction 0.621455633618737 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126746905 chr3:126746904 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12639 0 0 1 0 1 PLXNA1 chr3:126746929 5'GT 126746929 Upstream 26bp 11983 chr17 72297275 72297275 1 + G T LUAD 72297276 + 72297256 72297296 41 ACAGTTGGAAAATGCCTTGGGGGCCATCTCCCTGGAGTTCG ACAGTTGGAAAATGCCTTGTGGGCCATCTCCCTGGAGTTCG < 41bp 0.490560171043432 0.8106661449511 NA NA prediction 0.6213322899022 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72297276 chr17:72297275 nonsynonymous SNV 0.861 4 20 hm7G_associated_SNPs_12641 0 0 0 0 2 DNAI2 chr17:72297185 3'AG 72297185 Downstream 91bp 11984 chr17 72297275 72297275 1 + G T LUAD 72297276 + 72297256 72297296 41 ACAGTTGGAAAATGCCTTGGGGGCCATCTCCCTGGAGTTCG ACAGTTGGAAAATGCCTTGTGGGCCATCTCCCTGGAGTTCG < 41bp 0.490560171043432 0.8106661449511 NA NA prediction 0.6213322899022 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72297276 chr17:72297275 nonsynonymous SNV 0.861 4 20 hm7G_associated_SNPs_12641 0 0 0 0 2 DNAI2 chr17:72297307 5'GT 72297307 Upstream 33bp 11985 chr8 145735828 145735828 1 + G T LUSC 145735829 + 145735809 145735849 41 TGGGACTGTGGAATGGTGTGGGTGCTGTGGTCTGCTCCATC TGGGACTGTGGAATGGTGTTGGTGCTGTGGTCTGCTCCATC < 41bp 0.505152796494052 0.815806682726748 NA NA prediction 0.621307772465392 Functional Gain - MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735829 chr8:145735828 synonymous SNV . 0 20 hm7G_associated_SNPs_12642 0 0 1 0 2 MFSD3 chr8:145735743 3'AG 145735743 Downstream 86bp 11986 chr8 145735828 145735828 1 + G T LUSC 145735829 + 145735809 145735849 41 TGGGACTGTGGAATGGTGTGGGTGCTGTGGTCTGCTCCATC TGGGACTGTGGAATGGTGTTGGTGCTGTGGTCTGCTCCATC < 41bp 0.505152796494052 0.815806682726748 NA NA prediction 0.621307772465392 Functional Gain - MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145735829 chr8:145735828 synonymous SNV . 0 20 hm7G_associated_SNPs_12642 0 0 1 0 2 MFSD3 chr8:145735890 5'GT 145735890 Upstream 63bp 11987 chr16 2577951 2577951 1 + G T LUSC 2577952 + 2577932 2577972 41 CGTAGCCACGAAGTGATCCGGGCGCTGACGGCCCGTGGCAT CGTAGCCACGAAGTGATCCTGGCGCTGACGGCCCGTGGCAT < 41bp 0.491780628704468 0.810610166979882 NA NA prediction 0.621220333959763 Functional Gain - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human protein_coding chr16:2577952 chr16:2577951 nonsynonymous SNV 0.266 0 20 hm7G_associated_SNPs_12644 0 0 1 0 1 AMDHD2 chr16:2577986 5'GT 2577986 Upstream 36bp 11988 chr9 114688752 114688752 1 + G T LGG 114688753 + 114688733 114688773 41 CTTACGTAGCAGACAGACAGGGCTTTGCTGCCACCTTAGAG CTTACGTAGCAGACAGACATGGCTTTGCTGCCACCTTAGAG < 41bp 0.498419888320938 0.810587751161497 NA NA prediction 0.621175502322994 Functional Gain - UGCG ENSG00000148154 CDS Human protein_coding chr9:114688753 chr9:114688752 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12645 0 0 1 0 2 UGCG chr9:114688664 3'AG 114688664 Downstream 89bp 11989 chr9 114688752 114688752 1 + G T LGG 114688753 + 114688733 114688773 41 CTTACGTAGCAGACAGACAGGGCTTTGCTGCCACCTTAGAG CTTACGTAGCAGACAGACATGGCTTTGCTGCCACCTTAGAG < 41bp 0.498419888320938 0.810587751161497 NA NA prediction 0.621175502322994 Functional Gain - UGCG ENSG00000148154 CDS Human protein_coding chr9:114688753 chr9:114688752 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12645 0 0 1 0 2 UGCG chr9:114688776 5'GT 114688776 Upstream 25bp 11990 chr12 121098057 121098057 1 + G T LUSC 121098058 + 121098038 121098078 41 ATGGCTACATCAACTGCCGGGATCTGGGCAACTGCATGCGC ATGGCTACATCAACTGCCGTGATCTGGGCAACTGCATGCGC < 41bp 0.489956996324008 0.810576792087512 NA NA prediction 0.621153584175024 Functional Gain - CABP1 ENSG00000157782 CDS Human protein_coding chr12:121098058 chr12:121098057 synonymous SNV . 0 20 hm7G_associated_SNPs_12646 0 0 0 0 2 CABP1 chr12:121097999 3'AG 121097999 Downstream 59bp 11991 chr12 121098057 121098057 1 + G T LUSC 121098058 + 121098038 121098078 41 ATGGCTACATCAACTGCCGGGATCTGGGCAACTGCATGCGC ATGGCTACATCAACTGCCGTGATCTGGGCAACTGCATGCGC < 41bp 0.489956996324008 0.810576792087512 NA NA prediction 0.621153584175024 Functional Gain - CABP1 ENSG00000157782 CDS Human protein_coding chr12:121098058 chr12:121098057 synonymous SNV . 0 20 hm7G_associated_SNPs_12646 0 0 0 0 2 CABP1 chr12:121098142 5'GT 121098142 Upstream 86bp 11992 chr12 52377833 52377833 1 + G T HNSC 52377834 + 52377814 52377854 41 TTCTGACTATCATGAGCACGGGTCCCTGTTTGATTATCTGA TTCTGACTATCATGAGCACTGGTCCCTGTTTGATTATCTGA < 41bp 0.517483233317192 0.828053435573726 NA NA prediction 0.62114040451307 Functional Gain - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52377834 chr12:52377833 nonsynonymous SNV 0.935 5 20 hm7G_associated_SNPs_12647 0 0 1 0 1 ACVR1B chr12:52377783 3'AG 52377783 Downstream 51bp 11993 chr14 105859590 105859590 1 + G T GBM 105859591 + 105859571 105859611 41 CCAAGAAAGCGAAGGACAAGGACGTGGAGTCTAAGAGCCAG CCAAGAAAGCGAAGGACAATGACGTGGAGTCTAAGAGCCAG < 41bp 0.492077671564241 0.810546914420436 NA NA prediction 0.621093828840872 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105859591 chr14:105859590 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_12648 0 0 1 0 2 PACS2 chr14:105859559 3'AG 105859559 Downstream 32bp 11994 chr14 105859590 105859590 1 + G T GBM 105859591 + 105859571 105859611 41 CCAAGAAAGCGAAGGACAAGGACGTGGAGTCTAAGAGCCAG CCAAGAAAGCGAAGGACAATGACGTGGAGTCTAAGAGCCAG < 41bp 0.492077671564241 0.810546914420436 NA NA prediction 0.621093828840872 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105859591 chr14:105859590 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_12648 0 0 1 0 2 PACS2 chr14:105859672 5'GT 105859672 Upstream 83bp 11995 chr1 151261143 151261143 1 + G T LUAD 151261144 + 151261124 151261164 41 AATTTTCAGACCCATCTCCGGGAGGCCTGTCTGCACGTCTC AATTTTCAGACCCATCTCCTGGAGGCCTGTCTGCACGTCTC < 41bp 0.492831976866974 0.810538517041428 NA NA prediction 0.621077034082857 Functional Gain - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151261144 chr1:151261143 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_12649 0 0 1 0 1 ZNF687 chr1:151261182 5'GT 151261182 Upstream 40bp 11996 chr16 57787394 57787394 1 + G T UCEC 57787395 + 57787375 57787415 41 CGGAGATCCAGAACGCCGAGGACTACAACGAGATCTTCCAG CGGAGATCCAGAACGCCGATGACTACAACGAGATCTTCCAG < 41bp 0.486235318984776 0.810531261740647 NA NA prediction 0.621062523481295 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57787395 chr16:57787394 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_12650 0 0 0 0 1 KATNB1 chr16:57787431 5'GT 57787431 Upstream 38bp 11997 chr1 38168994 38168994 1 + G T UCEC 38168995 + 38168975 38169015 41 CATGGTCAAACCAACTCCAGGCCTGACACCCAGGTTTGACT CATGGTCAAACCAACTCCATGCCTGACACCCAGGTTTGACT < 41bp 0.509048502944723 0.819564743291713 NA NA prediction 0.621032480693981 Functional Gain - CDCA8 ENSG00000134690 CDS Human protein_coding chr1:38168995 chr1:38168994 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12651 0 0 1 0 2 CDCA8 chr1:38168924 3'AG 38168924 Downstream 71bp 11998 chr1 38168994 38168994 1 + G T UCEC 38168995 + 38168975 38169015 41 CATGGTCAAACCAACTCCAGGCCTGACACCCAGGTTTGACT CATGGTCAAACCAACTCCATGCCTGACACCCAGGTTTGACT < 41bp 0.509048502944723 0.819564743291713 NA NA prediction 0.621032480693981 Functional Gain - CDCA8 ENSG00000134690 CDS Human protein_coding chr1:38168995 chr1:38168994 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12651 0 0 1 0 2 CDCA8 chr1:38169019 5'GT 38169019 Upstream 26bp 11999 chr12 113624774 113624774 1 + G T UCEC 113624775 + 113624755 113624795 41 GGAGGCATCGAAGGCCTTGGGGGCAAAGGGGAGCTGTGAGA GGAGGCATCGAAGGCCTTGTGGGCAAAGGGGAGCTGTGAGA < 41bp 0.503204724073475 0.813683069171632 NA NA prediction 0.620956690196315 Functional Gain - RITA1 ENSG00000139405 CDS Human protein_coding chr12:113624775 chr12:113624774 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_12652 0 0 1 0 1 RITA1 chr12:113624853 5'GT 113624853 Upstream 80bp 12000 chr16 84883096 84883096 1 + G T ACC 84883097 + 84883077 84883117 41 GGTGTCCAGAGAGGTGCTCGGGGCCCATGTGCACGCACTAC GGTGTCCAGAGAGGTGCTCTGGGCCCATGTGCACGCACTAC < 41bp 0.492329163382604 0.81046534809252 NA NA prediction 0.620930696185039 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84883097 chr16:84883096 synonymous SNV . 0 20 hm7G_associated_SNPs_12653 0 0 0 0 1 CRISPLD2 chr16:84883123 5'GT 84883123 Upstream 28bp 12001 chr15 80869298 80869298 1 + G T LUSC 80869299 + 80869279 80869319 41 CCTCTGGACACTCCGGGAAGGCCTTCAGGTATGTGCCAGCG CCTCTGGACACTCCGGGAATGCCTTCAGGTATGTGCCAGCG < 41bp 0.507234730486164 0.81769964299434 NA NA prediction 0.620929825016352 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80869299 chr15:80869298 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_12654 0 0 1 0 2 ARNT2 chr15:80869207 3'AG 80869207 Downstream 92bp 12002 chr15 80869298 80869298 1 + G T LUSC 80869299 + 80869279 80869319 41 CCTCTGGACACTCCGGGAAGGCCTTCAGGTATGTGCCAGCG CCTCTGGACACTCCGGGAATGCCTTCAGGTATGTGCCAGCG < 41bp 0.507234730486164 0.81769964299434 NA NA prediction 0.620929825016352 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80869299 chr15:80869298 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_12654 0 0 1 0 2 ARNT2 chr15:80869306 5'GT 80869306 Upstream 9bp 12003 chr12 111733178 111733178 1 + G T LUSC 111733179 + 111733159 111733199 41 ACTTTGGCGGCCAGACTGGGGGAGGCAGAGGAGAAAATCAA ACTTTGGCGGCCAGACTGGTGGAGGCAGAGGAGAAAATCAA < 41bp 0.513774070880482 0.824177536565083 NA NA prediction 0.620806931369203 Functional Gain - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111733179 chr12:111733178 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12656 0 0 0 0 1 CUX2 chr12:111733137 3'AG 111733137 Downstream 42bp 12004 chr14 24532044 24532044 1 + G T COAD 24532045 + 24532025 24532065 41 GACCACAGATGATGAACTTGGGACCAACATTGTGAGCCCCC GACCACAGATGATGAACTTTGGACCAACATTGTGAGCCCCC < 41bp 0.50617794954243 0.816543032497433 NA NA prediction 0.620730165910007 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24532045 chr14:24532044 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12657 0 0 0 0 1 CARMIL3 chr14:24532055 5'GT 24532055 Upstream 12bp 12005 chr5 176297417 176297417 1 + G T LUAD 176297418 + 176297398 176297438 41 AGTGGTCGGCCTGTGGGCTGGACTGCACCCACTGGCGGAGC AGTGGTCGGCCTGTGGGCTTGACTGCACCCACTGGCGGAGC < 41bp 0.492259531452448 0.810331669242561 NA NA prediction 0.620663338485121 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176297418 chr5:176297417 synonymous SNV . 0 20 hm7G_associated_SNPs_12658 0 0 0 0 1 UNC5A chr5:176297371 3'AG 176297371 Downstream 47bp 12006 chr19 19453608 19453608 1 + G T LUAD 19453609 + 19453589 19453629 41 CTGTGATGCACTCCATGCAGGCCGGCTACCTGGAGAAGGCG CTGTGATGCACTCCATGCATGCCGGCTACCTGGAGAAGGCG < 41bp 0.478492708462305 0.810278062023614 NA NA prediction 0.620556124047228 Functional Gain - MAU2 ENSG00000129933 CDS Human protein_coding chr19:19453609 chr19:19453608 nonsynonymous SNV 0.905 1 20 hm7G_associated_SNPs_12659 0 0 1 0 1 MAU2 chr19:19453585 3'AG 19453585 Downstream 24bp 12007 chr21 38098506 38098506 1 + G T UCEC 38098507 + 38098487 38098527 41 GCTACCAGATTGTGGGGCTGGTGGCCGTGGGCCAGTCGCTG GCTACCAGATTGTGGGGCTTGTGGCCGTGGGCCAGTCGCTG < 41bp 0.493381832365583 0.810243344968868 NA NA prediction 0.620486689937737 Functional Gain - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38098507 chr21:38098506 synonymous SNV . 0 20 hm7G_associated_SNPs_12660 0 0 1 0 1 SIM2 chr21:38098420 3'AG 38098420 Downstream 87bp 12008 chr11 61015981 61015981 1 + G T LUAD 61015982 + 61015962 61016002 41 GGGTGCCTGTTACCGTCGAGGGTTACTGGCAGATCACCGTG GGGTGCCTGTTACCGTCGATGGTTACTGGCAGATCACCGTG < 41bp 0.503087106008442 0.81330138854156 NA NA prediction 0.620428565066236 Functional Gain - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61015982 chr11:61015981 nonsynonymous SNV 0.857 0 20 hm7G_associated_SNPs_12661 0 0 0 0 2 PGA5 chr11:61015891 3'AG 61015891 Downstream 91bp 12009 chr11 61015981 61015981 1 + G T LUAD 61015982 + 61015962 61016002 41 GGGTGCCTGTTACCGTCGAGGGTTACTGGCAGATCACCGTG GGGTGCCTGTTACCGTCGATGGTTACTGGCAGATCACCGTG < 41bp 0.503087106008442 0.81330138854156 NA NA prediction 0.620428565066236 Functional Gain - PGA5 ENSG00000229183;ENSG00000256713 CDS Human other chr11:61015982 chr11:61015981 nonsynonymous SNV 0.857 0 20 hm7G_associated_SNPs_12661 0 0 0 0 2 PGA5 chr11:61016007 5'GT 61016007 Upstream 27bp 12010 chr17 58236674 58236674 1 + G T LUAD 58236675 + 58236655 58236695 41 TCAGGCCCCTGCAGCAGCTGGGGCAGCGCACGGTGATAAAG TCAGGCCCCTGCAGCAGCTTGGGCAGCGCACGGTGATAAAG < 41bp 0.500413587561534 0.810626791771024 NA NA prediction 0.62042640841898 Functional Gain - CA4 ENSG00000167434 CDS Human protein_coding chr17:58236675 chr17:58236674 synonymous SNV . 0 20 hm7G_associated_SNPs_12662 0 0 0 0 1 CA4 chr17:58236591 3'AG 58236591 Downstream 84bp 12011 chr20 37534689 37534689 1 + G T COAD 37534690 + 37534670 37534710 41 GAGTGCGTGTGGATGTGAAGGACTGGGATGGCTGGGAGCCC GAGTGCGTGTGGATGTGAATGACTGGGATGGCTGGGAGCCC < 41bp 0.510495715438132 0.820693525056794 NA NA prediction 0.620395619237324 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37534690 chr20:37534689 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12663 0 0 0 0 2 PPP1R16B chr20:37534612 3'AG 37534612 Downstream 78bp 12012 chr20 37534689 37534689 1 + G T COAD 37534690 + 37534670 37534710 41 GAGTGCGTGTGGATGTGAAGGACTGGGATGGCTGGGAGCCC GAGTGCGTGTGGATGTGAATGACTGGGATGGCTGGGAGCCC < 41bp 0.510495715438132 0.820693525056794 NA NA prediction 0.620395619237324 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37534690 chr20:37534689 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12663 0 0 0 0 2 PPP1R16B chr20:37534737 5'GT 37534737 Upstream 49bp 12013 chr16 1836555 1836555 1 + G T LUAD 1836556 + 1836536 1836576 41 AGAGCCTGGAAACCTGGCCGGCGTCAGGCACATCATCCTGG AGAGCCTGGAAACCTGGCCTGCGTCAGGCACATCATCCTGG < 41bp 0.499745504153229 0.810167761962835 NA NA prediction 0.620335523925671 Functional Gain - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1836556 chr16:1836555 nonsynonymous SNV 0.009 3 20 hm7G_associated_SNPs_12664 0 0 1 0 1 NUBP2 chr16:1836538 3'AG 1836538 Downstream 18bp 12014 chr19 36278409 36278409 1 + G T UCEC 36278410 + 36278390 36278430 41 AGTGATGGGAGCCTGCTGAGGAGCCAGCGGCCCATGGGGAC AGTGATGGGAGCCTGCTGATGAGCCAGCGGCCCATGGGGAC < 41bp 0.491123278833245 0.810140237154993 NA NA prediction 0.620280474309987 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278410 chr19:36278409 nonsynonymous SNV 0.927 3 20 hm7G_associated_SNPs_12665 0 0 1 0 1 ARHGAP33 chr19:36278461 5'GT 36278461 Upstream 53bp 12015 chr17 41006586 41006586 1 + G T UCEC 41006587 + 41006567 41006607 41 TGCTGGAGATGGAGGAGCAGGCCGCCTTCCTCGTGGGAAGC TGCTGGAGATGGAGGAGCATGCCGCCTTCCTCGTGGGAAGC < 41bp 0.518215713420374 0.828345438956204 NA NA prediction 0.620259451071661 Functional Gain - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41006587 chr17:41006586 nonsynonymous SNV 0.934 1 20 hm7G_associated_SNPs_12666 0 0 1 0 1 AOC3 chr17:41006554 3'AG 41006554 Downstream 33bp 12016 chr19 48975660 48975660 1 + G T OV 48975661 + 48975641 48975681 41 CTTCCTGTACAAGGGCGAGGGGCTGAACAAGACAGCCATCG CTTCCTGTACAAGGGCGAGTGGCTGAACAAGACAGCCATCG < 41bp 0.51231272454473 0.822433852126585 NA NA prediction 0.620242255163711 Functional Gain - CYTH2 ENSG00000105443;ENSG00000268465 CDS Human other chr19:48975661 chr19:48975660 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12667 0 0 1 0 2 CYTH2 chr19:48975582 3'AG 48975582 Downstream 79bp 12017 chr19 48975660 48975660 1 + G T OV 48975661 + 48975641 48975681 41 CTTCCTGTACAAGGGCGAGGGGCTGAACAAGACAGCCATCG CTTCCTGTACAAGGGCGAGTGGCTGAACAAGACAGCCATCG < 41bp 0.51231272454473 0.822433852126585 NA NA prediction 0.620242255163711 Functional Gain - CYTH2 ENSG00000105443;ENSG00000268465 CDS Human protein_coding chr19:48975661 chr19:48975660 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12667 0 0 1 0 2 CYTH2 chr19:48975700 5'GT 48975700 Upstream 41bp 12018 chr14 69805397 69805397 1 + G T STAD 69805398 + 69805378 69805418 41 CAGGGTGTGGATGTGTGGTGGCAGTCTGGAGATCGTCCCCT CAGGGTGTGGATGTGTGGTTGCAGTCTGGAGATCGTCCCCT < 41bp 0.490869594907266 0.81008607882796 NA NA prediction 0.62017215765592 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69805398 chr14:69805397 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12669 0 0 0 0 2 GALNT16 chr14:69805368 3'AG 69805368 Downstream 30bp 12019 chr14 69805397 69805397 1 + G T STAD 69805398 + 69805378 69805418 41 CAGGGTGTGGATGTGTGGTGGCAGTCTGGAGATCGTCCCCT CAGGGTGTGGATGTGTGGTTGCAGTCTGGAGATCGTCCCCT < 41bp 0.490869594907266 0.81008607882796 NA NA prediction 0.62017215765592 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69805398 chr14:69805397 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12669 0 0 0 0 2 GALNT16 chr14:69805494 5'GT 69805494 Upstream 98bp 12020 chr19 41235228 41235228 1 + G T LUAD 41235229 + 41235209 41235249 41 TGCCTGCCTACTATGGCATGGTGCTGCAGGATGGCCAGACC TGCCTGCCTACTATGGCATTGTGCTGCAGGATGGCCAGACC < 41bp 0.492633308292143 0.810075262488151 NA NA prediction 0.620150524976302 Functional Gain - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41235229 chr19:41235228 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_12670 0 0 0 0 1 ITPKC chr19:41235320 5'GT 41235320 Upstream 93bp 12021 chr1 183867009 183867009 1 + G T ACC 183867010 + 183866990 183867030 41 CAGAAGCGTACCCAGAGGCGGCTGCAGCTCCAGAAGGACAT CAGAAGCGTACCCAGAGGCTGCTGCAGCTCCAGAAGGACAT < 41bp 0.500279726001324 0.810333846771414 NA NA prediction 0.62010824154018 Functional Gain - RGL1 ENSG00000143344 CDS Human protein_coding chr1:183867010 chr1:183867009 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_12671 0 0 1 0 2 RGL1 chr1:183866942 3'AG 183866942 Downstream 68bp 12022 chr1 183867009 183867009 1 + G T ACC 183867010 + 183866990 183867030 41 CAGAAGCGTACCCAGAGGCGGCTGCAGCTCCAGAAGGACAT CAGAAGCGTACCCAGAGGCTGCTGCAGCTCCAGAAGGACAT < 41bp 0.500279726001324 0.810333846771414 NA NA prediction 0.62010824154018 Functional Gain - RGL1 ENSG00000143344 CDS Human protein_coding chr1:183867010 chr1:183867009 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_12671 0 0 1 0 2 RGL1 chr1:183867031 5'GT 183867031 Upstream 23bp 12023 chr3 52836787 52836787 1 + G T UCEC 52836788 + 52836768 52836808 41 ATTACATTGAGCGGCTCTGGGCCTACCTCACCATTGAGCAG ATTACATTGAGCGGCTCTGTGCCTACCTCACCATTGAGCAG < 41bp 0.506786564114555 0.816814782522902 NA NA prediction 0.620056436816695 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52836788 chr3:52836787 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12672 0 0 1 0 1 ITIH3 chr3:52836822 5'GT 52836822 Upstream 36bp 12024 chr19 47883030 47883030 1 + G T rs200980579 47883031 + 47883011 47883051 41 CTCCCGCCTGGTGGCCGATGGCTGGCTGGAGCTGCAGCTAG CTCCCGCCTGGTGGCCGATTGCTGGCTGGAGCTGCAGCTAG < 41bp 0.51570254935635 0.825718693414203 NA NA prediction 0.620032288115706 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47883031 chr19:47883030 nonsynonymous SNV 0.414 2 20 hm7G_associated_SNPs_12673 0 0 1 0 1 DHX34 chr19:47882967 3'AG 47882967 Downstream 64bp 12025 chr21 45089829 45089829 1 + G T UCEC 45089830 + 45089810 45089850 41 TCTACTGCATGTGGGTGCAGGATGAACCCCTTCTACAGGTA TCTACTGCATGTGGGTGCATGATGAACCCCTTCTACAGGTA < 41bp 0.505059672888631 0.814930470331135 NA NA prediction 0.619741594885008 Functional Gain - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45089830 chr21:45089829 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_12674 0 0 1 0 2 RRP1B chr21:45089765 3'AG 45089765 Downstream 65bp 12026 chr21 45089829 45089829 1 + G T UCEC 45089830 + 45089810 45089850 41 TCTACTGCATGTGGGTGCAGGATGAACCCCTTCTACAGGTA TCTACTGCATGTGGGTGCATGATGAACCCCTTCTACAGGTA < 41bp 0.505059672888631 0.814930470331135 NA NA prediction 0.619741594885008 Functional Gain - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45089830 chr21:45089829 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_12674 0 0 1 0 2 RRP1B chr21:45089847 5'GT 45089847 Upstream 19bp 12027 chr17 61561268 61561268 1 + G T UCEC 61561269 + 61561249 61561289 41 AGCCCTGTGCAAGGAGGCAGGCTATGAGGGCCCACTGCACC AGCCCTGTGCAAGGAGGCATGCTATGAGGGCCCACTGCACC < 41bp 0.493123010883926 0.809840162783895 NA NA prediction 0.619680325567791 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61561269 chr17:61561268 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_12675 0 0 0 0 2 ACE chr17:61561210 3'AG 61561210 Downstream 59bp 12028 chr17 61561268 61561268 1 + G T UCEC 61561269 + 61561249 61561289 41 AGCCCTGTGCAAGGAGGCAGGCTATGAGGGCCCACTGCACC AGCCCTGTGCAAGGAGGCATGCTATGAGGGCCCACTGCACC < 41bp 0.493123010883926 0.809840162783895 NA NA prediction 0.619680325567791 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61561269 chr17:61561268 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_12675 0 0 0 0 2 ACE chr17:61561332 5'GT 61561332 Upstream 65bp 12029 chr12 132401007 132401007 1 + G T STAD 132401008 + 132400988 132401028 41 CTGCTGGCCCTCCTAGCCCGGCAGGGCGTGGTGATGACGCC CTGCTGGCCCTCCTAGCCCTGCAGGGCGTGGTGATGACGCC < 41bp 0.519840126333968 0.829662060970347 NA NA prediction 0.619643869272758 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132401008 chr12:132401007 nonsynonymous SNV 0.961 1 20 hm7G_associated_SNPs_12676 0 0 1 0 1 ULK1 chr12:132400943 3'AG 132400943 Downstream 65bp 12030 chr7 134931215 134931215 1 + G T UCEC 134931216 + 134931196 134931236 41 GGACCTTCTGACTGGCAGCGGGATCATTACCCCGCAGGAGG GGACCTTCTGACTGGCAGCTGGATCATTACCCCGCAGGAGG < 41bp 0.495296409891351 0.809813221776963 NA NA prediction 0.619626443553926 Functional Gain - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134931216 chr7:134931215 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_12677 0 0 0 0 1 STRA8 chr7:134931169 3'AG 134931169 Downstream 47bp 12031 chr16 77850906 77850906 1 + G T LAML 77850907 + 77850887 77850927 41 GCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGGGGG GCCAGGATTTGAGTGTTCTTGGATTGTTGAAGCTCTGGGGG < 41bp 0.496611587096195 0.809764243140336 NA NA prediction 0.619528486280672 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850907 chr16:77850906 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12678 0 0 0 0 2 VAT1L chr16:77850818 3'AG 77850818 Downstream 89bp 12032 chr16 77850906 77850906 1 + G T LAML 77850907 + 77850887 77850927 41 GCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGGGGG GCCAGGATTTGAGTGTTCTTGGATTGTTGAAGCTCTGGGGG < 41bp 0.496611587096195 0.809764243140336 NA NA prediction 0.619528486280672 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77850907 chr16:77850906 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12678 0 0 0 0 2 VAT1L chr16:77850947 5'GT 77850947 Upstream 42bp 12033 chr3 44607075 44607075 1 + G T BRCA 44607076 + 44607056 44607096 41 TACCTCACCCCTCAGTGGGGGCTCAGCCCCTGGAGCCCACC TACCTCACCCCTCAGTGGGTGCTCAGCCCCTGGAGCCCACC < 41bp 0.499854772061505 0.809742554785338 NA NA prediction 0.619485109570676 Functional Gain - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human protein_coding chr3:44607076 chr3:44607075 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_12679 0 0 0 0 2 ZKSCAN7 chr3:44606979 3'AG 44606979 Downstream 97bp 12034 chr3 44607075 44607075 1 + G T BRCA 44607076 + 44607056 44607096 41 TACCTCACCCCTCAGTGGGGGCTCAGCCCCTGGAGCCCACC TACCTCACCCCTCAGTGGGTGCTCAGCCCCTGGAGCCCACC < 41bp 0.499854772061505 0.809742554785338 NA NA prediction 0.619485109570676 Functional Gain - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44607076 chr3:44607075 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_12679 0 0 0 0 2 ZKSCAN7 chr3:44607147 5'GT 44607147 Upstream 73bp 12035 chr12 122612480 122612480 1 + G T LUAD 122612481 + 122612461 122612501 41 CTTTGTGACACCCCTGGACGGCTCTGTGGACGTAGACGAGC CTTTGTGACACCCCTGGACTGCTCTGTGGACGTAGACGAGC < 41bp 0.533541889570051 0.843236927306045 NA NA prediction 0.619390075471988 Functional Gain - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122612481 chr12:122612480 nonsynonymous SNV 0.676 4 20 hm7G_associated_SNPs_12682 0 0 1 0 1 MLXIP chr12:122612515 5'GT 122612515 Upstream 36bp 12036 chr7 150698991 150698991 1 + G T ACC 150698992 + 150698972 150699012 41 CCTGTATGGCTCCGAGACCGGCCGGGCCCAGAGCTACGCAC CCTGTATGGCTCCGAGACCTGCCGGGCCCAGAGCTACGCAC < 41bp 0.524184180678597 0.833834970327142 NA NA prediction 0.619301579297092 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150698992 chr7:150698991 nonsynonymous SNV 0.958 5 20 hm7G_associated_SNPs_12683 0 0 0 0 2 NOS3 chr7:150698909 3'AG 150698909 Downstream 83bp 12037 chr7 150698991 150698991 1 + G T ACC 150698992 + 150698972 150699012 41 CCTGTATGGCTCCGAGACCGGCCGGGCCCAGAGCTACGCAC CCTGTATGGCTCCGAGACCTGCCGGGCCCAGAGCTACGCAC < 41bp 0.524184180678597 0.833834970327142 NA NA prediction 0.619301579297092 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150698992 chr7:150698991 nonsynonymous SNV 0.958 5 20 hm7G_associated_SNPs_12683 0 0 0 0 2 NOS3 chr7:150699053 5'GT 150699053 Upstream 63bp 12038 chr11 67200239 67200239 1 + G T LUAD 67200240 + 67200220 67200260 41 TGAGATCACGCTGGCCCTGGGCCATCTCCACTCCCAGGGCA TGAGATCACGCTGGCCCTGTGCCATCTCCACTCCCAGGGCA < 41bp 0.484965940481493 0.809593798733891 NA NA prediction 0.619187597467782 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67200240 chr11:67200239 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12686 0 0 1 0 1 RPS6KB2 chr11:67200208 3'AG 67200208 Downstream 32bp 12039 chr9 135942012 135942012 1 + G T LUAD 135942013 + 135941993 135942033 41 CAACAACATCACGCTCTTCGGGGAGTCTGCTGGAGGTGCCA CAACAACATCACGCTCTTCTGGGAGTCTGCTGGAGGTGCCA < 41bp 0.523371162866935 0.832948161040032 NA NA prediction 0.619153996346194 Functional Gain - CEL ENSG00000170835 CDS Human protein_coding chr9:135942013 chr9:135942012 nonsynonymous SNV 0.981 5 20 hm7G_associated_SNPs_12687 0 0 1 0 2 CEL chr9:135941917 3'AG 135941917 Downstream 96bp 12040 chr9 135942012 135942012 1 + G T LUAD 135942013 + 135941993 135942033 41 CAACAACATCACGCTCTTCGGGGAGTCTGCTGGAGGTGCCA CAACAACATCACGCTCTTCTGGGAGTCTGCTGGAGGTGCCA < 41bp 0.523371162866935 0.832948161040032 NA NA prediction 0.619153996346194 Functional Gain - CEL ENSG00000170835 CDS Human protein_coding chr9:135942013 chr9:135942012 nonsynonymous SNV 0.981 5 20 hm7G_associated_SNPs_12687 0 0 1 0 2 CEL chr9:135942047 5'GT 135942047 Upstream 36bp 12041 chr14 105859671 105859671 1 + G T LUSC 105859672 + 105859652 105859692 41 AGCAGCAGAACATGCTGCGGGGTGAGCACCACCGGCCCCGG AGCAGCAGAACATGCTGCGTGGTGAGCACCACCGGCCCCGG < 41bp 0.493295000434232 0.809564677192871 NA NA prediction 0.619129354385743 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105859672 chr14:105859671 synonymous SNV . 0 20 hm7G_associated_SNPs_12688 0 0 0 0 1 PACS2 chr14:105859672 5'GT 105859672 Upstream 2bp 12042 chr17 25936327 25936327 1 + G T UCEC 25936328 + 25936308 25936348 41 CACAGACTTCGGGCTGTTTGGGATCTCAGGCGTGGTCCGAG CACAGACTTCGGGCTGTTTTGGATCTCAGGCGTGGTCCGAG < 41bp 0.51936289816574 0.82892136100027 NA NA prediction 0.61911692566906 Functional Gain - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25936328 chr17:25936327 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12689 0 0 1 0 1 KSR1 chr17:25936355 5'GT 25936355 Upstream 29bp 12043 chr8 22165558 22165558 1 + G T LUSC 22165559 + 22165539 22165579 41 AATGAACTGATGCGTTGGGGGCTCCGTCTGCAAAAGGATGT AATGAACTGATGCGTTGGGTGCTCCGTCTGCAAAAGGATGT < 41bp 0.503006969381302 0.812544434168564 NA NA prediction 0.619074929574523 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22165559 chr8:22165558 nonsynonymous SNV 0.729 2 20 hm7G_associated_SNPs_12691 0 0 0 0 1 PIWIL2 chr8:22165586 5'GT 22165586 Upstream 29bp 12044 chr8 11219209 11219209 1 + G T UCEC 11219210 + 11219190 11219230 41 GTTTGTGCCTAGCACGATTGGGGCTTTTGGACCCACCTCTC GTTTGTGCCTAGCACGATTTGGGCTTTTGGACCCACCTCTC < 41bp 0.508266098839844 0.817786334920107 NA NA prediction 0.619040472160527 Functional Gain - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11219210 chr8:11219209 . . 0 20 hm7G_associated_SNPs_12692 0 0 0 0 1 TDH chr8:11219144 3'AG 11219144 Downstream 66bp 12045 chr3 14485210 14485210 1 + G T CESC 14485211 + 14485191 14485231 41 ATCCTGAAGCCCTCACCAGGGAAGAGCCCAGGCACGCGGCC ATCCTGAAGCCCTCACCAGTGAAGAGCCCAGGCACGCGGCC < 41bp 0.486953766808382 0.809494082729549 NA NA prediction 0.618988165459099 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14485211 chr3:14485210 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_12693 0 0 1 0 2 SLC6A6 chr3:14485132 3'AG 14485132 Downstream 79bp 12046 chr3 14485210 14485210 1 + G T CESC 14485211 + 14485191 14485231 41 ATCCTGAAGCCCTCACCAGGGAAGAGCCCAGGCACGCGGCC ATCCTGAAGCCCTCACCAGTGAAGAGCCCAGGCACGCGGCC < 41bp 0.486953766808382 0.809494082729549 NA NA prediction 0.618988165459099 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14485211 chr3:14485210 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_12693 0 0 1 0 2 SLC6A6 chr3:14485136 3'AG 14485136 Downstream 75bp 12047 chr7 45701693 45701693 1 + G T LUSC 45701694 + 45701674 45701714 41 TTCTCTCAGATATAAAACCGGCCAAAAGGATGAAGTTCAAG TTCTCTCAGATATAAAACCTGCCAAAAGGATGAAGTTCAAG < 41bp 0.49922917955944 0.809444285478829 NA NA prediction 0.618888570957659 Functional Gain - ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45701694 chr7:45701693 synonymous SNV . 0 20 hm7G_associated_SNPs_12694 0 0 0 0 1 ADCY1 chr7:45701658 3'AG 45701658 Downstream 36bp 12048 chr12 644344 644344 1 + G T LUSC 644345 + 644325 644365 41 TCCACAGGGTACGGCAGCTGGAGAGAACTGGCCAAGGCTCT TCCACAGGGTACGGCAGCTTGAGAGAACTGGCCAAGGCTCT < 41bp 0.511462557938226 0.820906761261562 NA NA prediction 0.618888406646672 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:644345 chr12:644344 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_12695 0 0 0 0 1 B4GALNT3 chr12:644435 5'GT 644435 Upstream 92bp 12049 chr16 20432659 20432659 1 + G T LUSC 20432660 + 20432640 20432680 41 CTTTACCAGCGGAACCACCGGGGCCCCCAAGATGGTCGAGC CTTTACCAGCGGAACCACCTGGGCCCCCAAGATGGTCGAGC < 41bp 0.523851158507407 0.833263010791567 NA NA prediction 0.618823704568319 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432660 chr16:20432659 nonsynonymous SNV 0.356 5 20 hm7G_associated_SNPs_12696 0 0 0 0 2 ACSM5 chr16:20432580 3'AG 20432580 Downstream 80bp 12050 chr16 20432659 20432659 1 + G T LUSC 20432660 + 20432640 20432680 41 CTTTACCAGCGGAACCACCGGGGCCCCCAAGATGGTCGAGC CTTTACCAGCGGAACCACCTGGGCCCCCAAGATGGTCGAGC < 41bp 0.523851158507407 0.833263010791567 NA NA prediction 0.618823704568319 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432660 chr16:20432659 nonsynonymous SNV 0.356 5 20 hm7G_associated_SNPs_12696 0 0 0 0 2 ACSM5 chr16:20432723 5'GT 20432723 Upstream 65bp 12051 chr16 84922890 84922890 1 + G T SARC 84922891 + 84922871 84922911 41 AGTCATCAGCAACGAGAGTGGGGGTGACGTGGACGTGATGC AGTCATCAGCAACGAGAGTTGGGGTGACGTGGACGTGATGC < 41bp 0.511890438470721 0.821275430885099 NA NA prediction 0.618769984828757 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84922891 chr16:84922890 nonsynonymous SNV 0.009 5 20 hm7G_associated_SNPs_12697 0 0 0 0 2 CRISPLD2 chr16:84922836 3'AG 84922836 Downstream 55bp 12052 chr16 84922890 84922890 1 + G T SARC 84922891 + 84922871 84922911 41 AGTCATCAGCAACGAGAGTGGGGGTGACGTGGACGTGATGC AGTCATCAGCAACGAGAGTTGGGGTGACGTGGACGTGATGC < 41bp 0.511890438470721 0.821275430885099 NA NA prediction 0.618769984828757 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84922891 chr16:84922890 nonsynonymous SNV 0.009 5 20 hm7G_associated_SNPs_12697 0 0 0 0 2 CRISPLD2 chr16:84922969 5'GT 84922969 Upstream 80bp 12053 chr3 119530454 119530454 1 + G T LGG 119530455 + 119530435 119530475 41 GAAGAAAAGTGAACGGACAGGGACTCAGCCACTGGGAGTGC GAAGAAAAGTGAACGGACATGGACTCAGCCACTGGGAGTGC < 41bp 0.491595380640538 0.809356551834568 NA NA prediction 0.618713103669136 Functional Gain - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119530455 chr3:119530454 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_12699 0 0 0 0 1 NR1I2 chr3:119530386 3'AG 119530386 Downstream 69bp 12054 chr14 105849776 105849776 1 + G T LUSC 105849777 + 105849757 105849797 41 TACCTCAGTGCCATCCTGCGGCTCTTTGTGGAGCAGCTGTC TACCTCAGTGCCATCCTGCTGCTCTTTGTGGAGCAGCTGTC < 41bp 0.521517967125219 0.830792421807716 NA NA prediction 0.618548909364993 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105849777 chr14:105849776 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_12700 0 0 0 0 2 PACS2 chr14:105849696 3'AG 105849696 Downstream 81bp 12055 chr14 105849776 105849776 1 + G T LUSC 105849777 + 105849757 105849797 41 TACCTCAGTGCCATCCTGCGGCTCTTTGTGGAGCAGCTGTC TACCTCAGTGCCATCCTGCTGCTCTTTGTGGAGCAGCTGTC < 41bp 0.521517967125219 0.830792421807716 NA NA prediction 0.618548909364993 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105849777 chr14:105849776 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_12700 0 0 0 0 2 PACS2 chr14:105849850 5'GT 105849850 Upstream 75bp 12056 chr6 24505144 24505144 1 + G T LUSC 24505145 + 24505125 24505165 41 GGAAGGTGGGGGCCGCCCTGGCAGCCGGCTGTACTGTCGTG GGAAGGTGGGGGCCGCCCTTGCAGCCGGCTGTACTGTCGTG < 41bp 0.480615301843772 0.809273236171777 NA NA prediction 0.618546472343555 Functional Gain - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24505145 chr6:24505144 synonymous SNV . 0 20 hm7G_associated_SNPs_12701 0 0 1 0 2 ALDH5A1 chr6:24505097 3'AG 24505097 Downstream 48bp 12057 chr6 24505144 24505144 1 + G T LUSC 24505145 + 24505125 24505165 41 GGAAGGTGGGGGCCGCCCTGGCAGCCGGCTGTACTGTCGTG GGAAGGTGGGGGCCGCCCTTGCAGCCGGCTGTACTGTCGTG < 41bp 0.480615301843772 0.809273236171777 NA NA prediction 0.618546472343555 Functional Gain - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24505145 chr6:24505144 synonymous SNV . 0 20 hm7G_associated_SNPs_12701 0 0 1 0 2 ALDH5A1 chr6:24505213 5'GT 24505213 Upstream 70bp 12058 chr10 135025036 135025036 1 + G T LIHC 135025037 + 135025017 135025057 41 GACTTCCCTCGGAACAGCGGGCTGCTGGGGAAGCTAGAGGA GACTTCCCTCGGAACAGCGTGCTGCTGGGGAAGCTAGAGGA < 41bp 0.491321479421205 0.809244668073707 NA NA prediction 0.618489336147413 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135025037 chr10:135025036 nonsynonymous SNV 0.077 0 20 hm7G_associated_SNPs_12702 0 0 0 0 1 KNDC1 chr10:135025073 5'GT 135025073 Upstream 38bp 12059 chr1 160143940 160143940 1 + G T UCEC 160143941 + 160143921 160143961 41 TGCATGGTGCAGAACTGAAGGACATACAGTCCAAGCAGCTT TGCATGGTGCAGAACTGAATGACATACAGTCCAAGCAGCTT < 41bp 0.501992797331332 0.811229286237873 NA NA prediction 0.618472977813083 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160143941 chr1:160143940 nonsynonymous SNV 0.005 5 20 hm7G_associated_SNPs_12703 0 0 0 3 1 ATP1A4 chr1:160143901 3'AG 160143901 Downstream 40bp 12060 chr19 49965233 49965233 1 + G T COAD 49965234 + 49965214 49965254 41 TGCTGCTGCTGACGGACACGGCGGACGTAGACTCGGCCGTG TGCTGCTGCTGACGGACACTGCGGACGTAGACTCGGCCGTG < 41bp 0.514006668571325 0.823206483892351 NA NA prediction 0.618399630642053 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49965234 chr19:49965233 synonymous SNV . 0 20 hm7G_associated_SNPs_12704 0 0 1 0 2 ALDH16A1 chr19:49965141 3'AG 49965141 Downstream 93bp 12061 chr19 49965233 49965233 1 + G T COAD 49965234 + 49965214 49965254 41 TGCTGCTGCTGACGGACACGGCGGACGTAGACTCGGCCGTG TGCTGCTGCTGACGGACACTGCGGACGTAGACTCGGCCGTG < 41bp 0.514006668571325 0.823206483892351 NA NA prediction 0.618399630642053 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49965234 chr19:49965233 synonymous SNV . 0 20 hm7G_associated_SNPs_12704 0 0 1 0 2 ALDH16A1 chr19:49965293 5'GT 49965293 Upstream 61bp 12062 chr1 150468986 150468986 1 + G T PRAD 150468987 + 150468967 150469007 41 TCCTTATGGAGGTCTTCAGGGGCCCCAGAGACACTGCAGAG TCCTTATGGAGGTCTTCAGTGGCCCCAGAGACACTGCAGAG < 41bp 0.490005465308103 0.809181499553081 NA NA prediction 0.618362999106162 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150468987 chr1:150468986 nonsynonymous SNV 0.114 0 20 hm7G_associated_SNPs_12705 0 0 0 2 1 TARS2 chr1:150468958 3'AG 150468958 Downstream 29bp 12063 chr11 73068350 73068350 1 + G T LUAD 73068351 + 73068331 73068371 41 TGCTGTGGAAGCTGCCGCTGGAAGACGCAGACATCATCAAA TGCTGTGGAAGCTGCCGCTTGAAGACGCAGACATCATCAAA < 41bp 0.49014864043191 0.80916987219347 NA NA prediction 0.618339744386941 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068351 chr11:73068350 synonymous SNV . 0 20 hm7G_associated_SNPs_12706 0 0 0 0 2 ARHGEF17 chr11:73068287 3'AG 73068287 Downstream 64bp 12064 chr11 73068350 73068350 1 + G T LUAD 73068351 + 73068331 73068371 41 TGCTGTGGAAGCTGCCGCTGGAAGACGCAGACATCATCAAA TGCTGTGGAAGCTGCCGCTTGAAGACGCAGACATCATCAAA < 41bp 0.49014864043191 0.80916987219347 NA NA prediction 0.618339744386941 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73068351 chr11:73068350 synonymous SNV . 0 20 hm7G_associated_SNPs_12706 0 0 0 0 2 ARHGEF17 chr11:73068372 5'GT 73068372 Upstream 23bp 12065 chr22 51143509 51143509 1 + G T HNSC 51143510 + 51143490 51143530 41 AAGGAAGCCAGAAGAGGACGGGGCTCGGCGCAGAGGTGAGG AAGGAAGCCAGAAGAGGACTGGGCTCGGCGCAGAGGTGAGG < 41bp 0.486569718979176 0.809163393718737 NA NA prediction 0.618326787437474 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143510 chr22:51143509 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_12707 0 0 1 0 1 SHANK3 chr22:51143524 5'GT 51143524 Upstream 16bp 12066 chr10 103904063 103904063 1 + G T LUAD 103904064 + 103904044 103904084 41 CTTGGCTGTAGGAAACTCAGGGTAAGTATGGAGACATGAGC CTTGGCTGTAGGAAACTCATGGTAAGTATGGAGACATGAGC < 41bp 0.503289566841306 0.812446971231603 NA NA prediction 0.618314808780593 Functional Gain - PPRC1 ENSG00000148840 CDS Human protein_coding chr10:103904064 chr10:103904063 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12708 0 0 1 0 1 PPRC1 chr10:103904007 3'AG 103904007 Downstream 57bp 12067 chr9 34972508 34972508 1 + G T PAAD 34972509 + 34972489 34972529 41 GATGGCCCACACAGAAACAGGCTGGAGCTGCCACTACTGTG GATGGCCCACACAGAAACATGCTGGAGCTGCCACTACTGTG < 41bp 0.503055050403969 0.812205211658553 NA NA prediction 0.618300322509168 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34972509 chr9:34972508 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12709 0 0 0 0 1 PHF24 chr9:34972528 5'GT 34972528 Upstream 21bp 12068 chr1 43784978 43784978 1 + G T GBM 43784979 + 43784959 43784999 41 CTCCAAGATTGCAGACTTCGGCCTTTCTCGGGGAGAGGAGG CTCCAAGATTGCAGACTTCTGCCTTTCTCGGGGAGAGGAGG < 41bp 0.497532871339987 0.80910822033678 NA NA prediction 0.61821644067356 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43784979 chr1:43784978 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12710 0 0 0 0 2 TIE1 chr1:43784906 3'AG 43784906 Downstream 73bp 12069 chr1 43784978 43784978 1 + G T GBM 43784979 + 43784959 43784999 41 CTCCAAGATTGCAGACTTCGGCCTTTCTCGGGGAGAGGAGG CTCCAAGATTGCAGACTTCTGCCTTTCTCGGGGAGAGGAGG < 41bp 0.497532871339987 0.80910822033678 NA NA prediction 0.61821644067356 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43784979 chr1:43784978 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12710 0 0 0 0 2 TIE1 chr1:43785019 5'GT 43785019 Upstream 42bp 12070 chr3 16260957 16260957 1 + G T HNSC 16260958 + 16260938 16260978 41 TGCAGCTGCAAAGGAGACTGGGTTGTCGGACATTCCACTGG TGCAGCTGCAAAGGAGACTTGGTTGTCGGACATTCCACTGG < 41bp 0.50228466049019 0.81138846311283 NA NA prediction 0.618207605245281 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16260958 chr3:16260957 synonymous SNV . 0 20 hm7G_associated_SNPs_12711 0 0 0 0 1 GALNT15 chr3:16260910 3'AG 16260910 Downstream 48bp 12071 chr11 66811194 66811194 1 + G T THCA 66811195 + 66811175 66811215 41 CTGGAGGAGAAGAGCCTGCGGTTTTCTGTATTTGGCATCGA CTGGAGGAGAAGAGCCTGCTGTTTTCTGTATTTGGCATCGA < 41bp 0.493992819652488 0.809090841275721 NA NA prediction 0.618181682551441 Functional Gain - SYT12 ENSG00000173227 CDS Human protein_coding chr11:66811195 chr11:66811194 nonsynonymous SNV 0.917 1 20 hm7G_associated_SNPs_12712 0 0 0 0 1 SYT12 chr11:66811109 3'AG 66811109 Downstream 86bp 12072 chr15 69347714 69347714 1 + G T ACC 69347715 + 69347695 69347735 41 TGTACATGACATCTGCACTGGGCAAGAATGACATGAAGGCC TGTACATGACATCTGCACTTGGCAAGAATGACATGAAGGCC < 41bp 0.501885683711845 0.81094399119674 NA NA prediction 0.61811661496979 Functional Gain - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69347715 chr15:69347714 synonymous SNV . 0 20 hm7G_associated_SNPs_12713 0 0 0 7 1 NOX5 chr15:69347674 3'AG 69347674 Downstream 41bp 12073 chr1 44157192 44157192 1 + G T STAD 44157193 + 44157173 44157213 41 ATGGGGTCCCCCCTGCAAAGGCTTCTGAAGACTGGATGTGT ATGGGGTCCCCCCTGCAAATGCTTCTGAAGACTGGATGTGT < 41bp 0.503457603662952 0.812515360426654 NA NA prediction 0.618115513527405 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44157193 chr1:44157192 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_12714 0 0 0 0 2 KDM4A chr1:44157167 3'AG 44157167 Downstream 26bp 12074 chr1 44157192 44157192 1 + G T STAD 44157193 + 44157173 44157213 41 ATGGGGTCCCCCCTGCAAAGGCTTCTGAAGACTGGATGTGT ATGGGGTCCCCCCTGCAAATGCTTCTGAAGACTGGATGTGT < 41bp 0.503457603662952 0.812515360426654 NA NA prediction 0.618115513527405 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44157193 chr1:44157192 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_12714 0 0 0 0 2 KDM4A chr1:44157243 5'GT 44157243 Upstream 52bp 12075 chr16 84203534 84203534 1 + G T PRAD 84203535 + 84203515 84203555 41 GGCAAGGAGGAGCCTCCCGGGGACAGAGAAACAAGGCAGAA GGCAAGGAGGAGCCTCCCGTGGACAGAGAAACAAGGCAGAA < 41bp 0.508247821062956 0.817301952085119 NA NA prediction 0.618108262044327 Functional Gain - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84203535 chr16:84203534 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_12715 0 0 0 0 1 DNAAF1 chr16:84203465 3'AG 84203465 Downstream 70bp 12076 chr22 31979911 31979911 1 + G T rs140987552 31979912 + 31979892 31979932 41 CTCAGATTGAGCAGAAAAAGGAAAGAGAGCTGCTCCCCTTA CTCAGATTGAGCAGAAAAATGAAAGAGAGCTGCTCCCCTTA < 41bp 0.492218109877776 0.809028120821896 NA NA prediction 0.618056241643792 Functional Gain - SFI1 ENSG00000198089 CDS Human protein_coding chr22:31979912 chr22:31979911 nonsynonymous SNV 0.071 3 20 hm7G_associated_SNPs_12716 0 0 1 0 2 SFI1 chr22:31979861 3'AG 31979861 Downstream 51bp 12077 chr22 31979911 31979911 1 + G T rs140987552 31979912 + 31979892 31979932 41 CTCAGATTGAGCAGAAAAAGGAAAGAGAGCTGCTCCCCTTA CTCAGATTGAGCAGAAAAATGAAAGAGAGCTGCTCCCCTTA < 41bp 0.492218109877776 0.809028120821896 NA NA prediction 0.618056241643792 Functional Gain - SFI1 ENSG00000198089 CDS Human protein_coding chr22:31979912 chr22:31979911 nonsynonymous SNV 0.071 3 20 hm7G_associated_SNPs_12716 0 0 1 0 2 SFI1 chr22:31979958 5'GT 31979958 Upstream 48bp 12078 chr22 40803271 40803271 1 + G T STAD 40803272 + 40803252 40803292 41 GAACTGGTGGCTGACCTCCGGGAAGCCATCCTGCGCGTGGC GAACTGGTGGCTGACCTCCTGGAAGCCATCCTGCGCGTGGC < 41bp 0.494463033684118 0.809009144139075 NA NA prediction 0.61801828827815 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803272 chr22:40803271 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_12717 0 0 1 0 2 SGSM3 chr22:40803205 3'AG 40803205 Downstream 67bp 12079 chr22 40803271 40803271 1 + G T STAD 40803272 + 40803252 40803292 41 GAACTGGTGGCTGACCTCCGGGAAGCCATCCTGCGCGTGGC GAACTGGTGGCTGACCTCCTGGAAGCCATCCTGCGCGTGGC < 41bp 0.494463033684118 0.809009144139075 NA NA prediction 0.61801828827815 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803272 chr22:40803271 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_12717 0 0 1 0 2 SGSM3 chr22:40803332 5'GT 40803332 Upstream 62bp 12080 chr12 81472130 81472130 1 + G T ESCA 81472131 + 81472111 81472151 41 CCGACCCCGAGAGGTTCTGGGGCAAAGCTGCCGAGCAGATC CCGACCCCGAGAGGTTCTGTGGCAAAGCTGCCGAGCAGATC < 41bp 0.502703467414159 0.811682815954507 NA NA prediction 0.617958697080696 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81472131 chr12:81472130 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_12718 0 0 1 0 2 ACSS3 chr12:81472207 5'GT 81472207 Upstream 78bp 12081 chr12 81472130 81472130 1 + G T ESCA 81472131 + 81472111 81472151 41 CCGACCCCGAGAGGTTCTGGGGCAAAGCTGCCGAGCAGATC CCGACCCCGAGAGGTTCTGTGGCAAAGCTGCCGAGCAGATC < 41bp 0.502703467414159 0.811682815954507 NA NA prediction 0.617958697080696 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81472131 chr12:81472130 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_12718 0 0 1 0 2 ACSS3 chr12:81472210 5'GT 81472210 Upstream 81bp 12082 chr19 1979332 1979332 1 + G T SARC 1979333 + 1979313 1979353 41 CGCAGGCCGACACGCTCAAGGAGCGGTACCAGAAGATCGGG CGCAGGCCGACACGCTCAATGAGCGGTACCAGAAGATCGGG < 41bp 0.483713967463678 0.808963224223339 NA NA prediction 0.617926448446678 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979333 chr19:1979332 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12720 0 0 1 0 2 CSNK1G2 chr19:1979318 3'AG 1979318 Downstream 15bp 12083 chr19 1979332 1979332 1 + G T SARC 1979333 + 1979313 1979353 41 CGCAGGCCGACACGCTCAAGGAGCGGTACCAGAAGATCGGG CGCAGGCCGACACGCTCAATGAGCGGTACCAGAAGATCGGG < 41bp 0.483713967463678 0.808963224223339 NA NA prediction 0.617926448446678 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979333 chr19:1979332 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12720 0 0 1 0 2 CSNK1G2 chr19:1979402 5'GT 1979402 Upstream 71bp 12084 chr12 2930940 2930940 1 + G T UCEC 2930941 + 2930921 2930961 41 ATCACCAGCTCTTTGCCCTGGAGAAACTGGATGTCACCGTG ATCACCAGCTCTTTGCCCTTGAGAAACTGGATGTCACCGTG < 41bp 0.49125416675696 0.80893128663915 NA NA prediction 0.617862573278299 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930941 chr12:2930940 synonymous SNV . 0 20 hm7G_associated_SNPs_12721 0 0 1 1 2 ITFG2 chr12:2930858 3'AG 2930858 Downstream 83bp 12085 chr12 2930940 2930940 1 + G T UCEC 2930941 + 2930921 2930961 41 ATCACCAGCTCTTTGCCCTGGAGAAACTGGATGTCACCGTG ATCACCAGCTCTTTGCCCTTGAGAAACTGGATGTCACCGTG < 41bp 0.49125416675696 0.80893128663915 NA NA prediction 0.617862573278299 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2930941 chr12:2930940 synonymous SNV . 0 20 hm7G_associated_SNPs_12721 0 0 1 1 2 ITFG2 chr12:2930958 5'GT 2930958 Upstream 19bp 12086 chr2 29240096 29240096 1 + G T LUSC 29240097 + 29240077 29240117 41 GAGATGGAGCTGCTTCGGAGGCTGGAGGAGCCCAGGACAGG GAGATGGAGCTGCTTCGGATGCTGGAGGAGCCCAGGACAGG < 41bp 0.520784318008862 0.829714119768602 NA NA prediction 0.617859603519479 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29240097 chr2:29240096 nonsynonymous SNV 0.018 3 20 hm7G_associated_SNPs_12722 0 0 0 0 2 TOGARAM2 chr2:29240020 3'AG 29240020 Downstream 77bp 12087 chr2 29240096 29240096 1 + G T LUSC 29240097 + 29240077 29240117 41 GAGATGGAGCTGCTTCGGAGGCTGGAGGAGCCCAGGACAGG GAGATGGAGCTGCTTCGGATGCTGGAGGAGCCCAGGACAGG < 41bp 0.520784318008862 0.829714119768602 NA NA prediction 0.617859603519479 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29240097 chr2:29240096 nonsynonymous SNV 0.018 3 20 hm7G_associated_SNPs_12722 0 0 0 0 2 TOGARAM2 chr2:29240170 5'GT 29240170 Upstream 75bp 12088 chr16 84472775 84472775 1 + G T rs80000075 84472776 + 84472756 84472796 41 TGACCTTTCGATCCAGCCTGGCTGTGGCGGCCATTCCAGAG TGACCTTTCGATCCAGCCTTGCTGTGGCGGCCATTCCAGAG < 41bp 0.508171696678436 0.817095583531971 NA NA prediction 0.617847773707069 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84472776 chr16:84472775 synonymous SNV . 0 20 hm7G_associated_SNPs_12723 0 0 0 0 1 ATP2C2 chr16:84472772 3'AG 84472772 Downstream 4bp 12089 chr2 27597589 27597589 1 + G T LGG 27597590 + 27597570 27597610 41 CCTATGATGACGATGTCATGGAGAACCGGGTTGGCCTGAAC CCTATGATGACGATGTCATTGAGAACCGGGTTGGCCTGAAC < 41bp 0.501520619019392 0.810439033756372 NA NA prediction 0.617836829473961 Functional Gain - SNX17 ENSG00000115234 CDS Human protein_coding chr2:27597590 chr2:27597589 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12724 0 0 1 0 2 SNX17 chr2:27597556 3'AG 27597556 Downstream 34bp 12090 chr2 27597589 27597589 1 + G T LGG 27597590 + 27597570 27597610 41 CCTATGATGACGATGTCATGGAGAACCGGGTTGGCCTGAAC CCTATGATGACGATGTCATTGAGAACCGGGTTGGCCTGAAC < 41bp 0.501520619019392 0.810439033756372 NA NA prediction 0.617836829473961 Functional Gain - SNX17 ENSG00000115234 CDS Human protein_coding chr2:27597590 chr2:27597589 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12724 0 0 1 0 2 SNX17 chr2:27597625 5'GT 27597625 Upstream 37bp 12091 chr6 37426445 37426445 1 + G T UCEC 37426446 + 37426426 37426466 41 CTTTGCTGATGTCTGCGCAGGCCCAGGTGGCTTCTCAGAGT CTTTGCTGATGTCTGCGCATGCCCAGGTGGCTTCTCAGAGT < 41bp 0.51222745153717 0.821130936694601 NA NA prediction 0.617806970314862 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37426446 chr6:37426445 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12725 0 0 1 0 1 CMTR1 chr6:37426388 3'AG 37426388 Downstream 58bp 12092 chr17 9538823 9538823 1 + G T COAD 9538824 + 9538804 9538844 41 GGGTGAAGAGGAACAACGAGGAGTGTGTCACCGCCAGCACC GGGTGAAGAGGAACAACGATGAGTGTGTCACCGCCAGCACC < 41bp 0.501397890884002 0.810255499374155 NA NA prediction 0.617715216980308 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9538824 chr17:9538823 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_12727 0 0 0 0 1 CFAP52 chr17:9538873 5'GT 9538873 Upstream 51bp 12093 chr17 78059814 78059814 1 + G T STAD 78059815 + 78059795 78059835 41 GGTCTAGGGGGAAGAAGTGGGGCCCCTGGAGCTTGAAATCA GGTCTAGGGGGAAGAAGTGTGGCCCCTGGAGCTTGAAATCA < 41bp 0.506601463548815 0.815457005319292 NA NA prediction 0.617711083540955 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78059815 chr17:78059814 nonsynonymous SNV 0.665 3 20 hm7G_associated_SNPs_12728 0 0 0 0 1 CCDC40 chr17:78059802 3'AG 78059802 Downstream 13bp 12094 chr19 1978706 1978706 1 + G T COAD 1978707 + 1978687 1978727 41 CTGTTCGACCTGTGCGACCGGACCTTCACGCTCAAGACGGT CTGTTCGACCTGTGCGACCTGACCTTCACGCTCAAGACGGT < 41bp 0.515805769506364 0.824658168699431 NA NA prediction 0.617704798386134 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978707 chr19:1978706 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_12729 0 0 1 0 1 CSNK1G2 chr19:1978749 5'GT 1978749 Upstream 44bp 12095 chr7 100459382 100459382 1 + G T LUAD 100459383 + 100459363 100459403 41 GTAAGTATCTGCTTCGGCTGGACGTCCGGAAGGATCACGTG GTAAGTATCTGCTTCGGCTTGACGTCCGGAAGGATCACGTG < 41bp 0.510786017508844 0.819541526658871 NA NA prediction 0.617511018300055 Functional Gain - SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100459383 chr7:100459382 synonymous SNV . 0 20 hm7G_associated_SNPs_12730 0 0 1 0 1 SLC12A9 chr7:100459359 3'AG 100459359 Downstream 24bp 12096 chr3 45714197 45714197 1 + G T BLCA 45714198 + 45714178 45714218 41 CCAGATCCTGCAAGCCCTGGGGAAGTCCTACCACCCCGGCT CCAGATCCTGCAAGCCCTGTGGAAGTCCTACCACCCCGGCT < 41bp 0.492432567730374 0.80872732762509 NA NA prediction 0.617454655250179 Functional Gain - LIMD1 ENSG00000144791 CDS Human protein_coding chr3:45714198 chr3:45714197 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_12731 0 0 1 0 1 LIMD1 chr3:45714182 3'AG 45714182 Downstream 16bp 12097 chr10 135024994 135024994 1 + G T LUAD 135024995 + 135024975 135025015 41 CTCTGCGTCCTGCAGGCCTGGGTGGAGGACTGCTACGCTGT CTCTGCGTCCTGCAGGCCTTGGTGGAGGACTGCTACGCTGT < 41bp 0.521227701259522 0.829951952251853 NA NA prediction 0.617448501984663 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135024995 chr10:135024994 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12732 0 0 0 0 2 KNDC1 chr10:135024926 3'AG 135024926 Downstream 69bp 12098 chr10 135024994 135024994 1 + G T LUAD 135024995 + 135024975 135025015 41 CTCTGCGTCCTGCAGGCCTGGGTGGAGGACTGCTACGCTGT CTCTGCGTCCTGCAGGCCTTGGTGGAGGACTGCTACGCTGT < 41bp 0.521227701259522 0.829951952251853 NA NA prediction 0.617448501984663 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135024995 chr10:135024994 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12732 0 0 0 0 2 KNDC1 chr10:135025073 5'GT 135025073 Upstream 80bp 12099 chr15 29390704 29390704 1 + G T LUSC 29390705 + 29390685 29390725 41 CTTCTTAGAATTCTGAGGGGGATGCCCAGACGCTGACGGAA CTTCTTAGAATTCTGAGGGTGATGCCCAGACGCTGACGGAA < 41bp 0.497781816726766 0.808706643811844 NA NA prediction 0.617413287623687 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29390705 chr15:29390704 synonymous SNV . 0 20 hm7G_associated_SNPs_12733 0 0 1 0 2 APBA2 chr15:29390693 3'AG 29390693 Downstream 12bp 12100 chr15 29390704 29390704 1 + G T LUSC 29390705 + 29390685 29390725 41 CTTCTTAGAATTCTGAGGGGGATGCCCAGACGCTGACGGAA CTTCTTAGAATTCTGAGGGTGATGCCCAGACGCTGACGGAA < 41bp 0.497781816726766 0.808706643811844 NA NA prediction 0.617413287623687 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29390705 chr15:29390704 synonymous SNV . 0 20 hm7G_associated_SNPs_12733 0 0 1 0 2 APBA2 chr15:29390779 5'GT 29390779 Upstream 76bp 12101 chr6 117859908 117859908 1 + G T UCEC 117859909 + 117859889 117859929 41 AGCCCGACTTCAGGACCAAGGCCCATCATGGGCTTCGGGCG AGCCCGACTTCAGGACCAATGCCCATCATGGGCTTCGGGCG < 41bp 0.522725153788055 0.831424667143713 NA NA prediction 0.617399026711317 Functional Gain - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117859909 chr6:117859908 nonsynonymous SNV 0.660 4 20 hm7G_associated_SNPs_12734 0 0 0 0 1 DCBLD1 chr6:117859998 5'GT 117859998 Upstream 91bp 12102 chr19 36166816 36166816 1 + G T UCEC 36166817 + 36166797 36166837 41 TCCGGGCGGCCACTCCGGAGGTGGTGTTCCCCTGGCCCCCA TCCGGGCGGCCACTCCGGATGTGGTGTTCCCCTGGCCCCCA < 41bp 0.509558767169184 0.818253955999119 NA NA prediction 0.617390377659871 Functional Gain - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36166817 chr19:36166816 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_12735 0 0 0 0 1 UPK1A chr19:36166742 3'AG 36166742 Downstream 75bp 12103 chr7 150704341 150704341 1 + G T LUSC 150704342 + 150704322 150704362 41 CCAGGAGGAGGCCTTCCGAGGCTGGGCCCAGGCTGCCTTCC CCAGGAGGAGGCCTTCCGATGCTGGGCCCAGGCTGCCTTCC < 41bp 0.52640760135204 0.835049155499442 NA NA prediction 0.617283108294804 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704342 chr7:150704341 nonsynonymous SNV 0.774 1 20 hm7G_associated_SNPs_12737 0 0 1 0 1 NOS3 chr7:150704364 5'GT 150704364 Upstream 24bp 12104 chr17 39973440 39973440 1 + G T LUAD 39973441 + 39973421 39973461 41 GCCTCCCCACCTGGGCTATGGGAGCATCGGCCTGGGTGAGA GCCTCCCCACCTGGGCTATTGGAGCATCGGCCTGGGTGAGA < 41bp 0.525593700004064 0.834227199519018 NA NA prediction 0.617266999029908 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39973441 chr17:39973440 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_12738 0 0 1 0 1 FKBP10 chr17:39973455 5'GT 39973455 Upstream 16bp 12105 chr19 10568686 10568686 1 + G T COAD 10568687 + 10568667 10568707 41 GCCCATGTCCCAAATCACAGGGTTGAAAAAGTTGATGCATA GCCCATGTCCCAAATCACATGGTTGAAAAAGTTGATGCATA < 41bp 0.516807004515927 0.825436743793283 NA NA prediction 0.617259478554713 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10568687 chr19:10568686 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_12739 0 0 1 0 1 PDE4A chr19:10568778 5'GT 10568778 Upstream 93bp 12106 chr21 47409557 47409557 1 + G T UCEC 47409558 + 47409538 47409578 41 TCGGACCTGTTGGGTACCAGGGAATGAAGGTACGTGCCCCC TCGGACCTGTTGGGTACCATGGAATGAAGGTACGTGCCCCC < 41bp 0.526776304912908 0.835403699755099 NA NA prediction 0.617254789684383 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409558 chr21:47409557 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_12740 0 0 1 0 2 COL6A1 chr21:47409522 3'AG 47409522 Downstream 36bp 12107 chr21 47409557 47409557 1 + G T UCEC 47409558 + 47409538 47409578 41 TCGGACCTGTTGGGTACCAGGGAATGAAGGTACGTGCCCCC TCGGACCTGTTGGGTACCATGGAATGAAGGTACGTGCCCCC < 41bp 0.526776304912908 0.835403699755099 NA NA prediction 0.617254789684383 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409558 chr21:47409557 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_12740 0 0 1 0 2 COL6A1 chr21:47409566 5'GT 47409566 Upstream 10bp 12108 chr10 50827892 50827892 1 + G T LUSC 50827893 + 50827873 50827913 41 GCCATTGTGCAGCAGTTTGGGGCCCCTGGTGGCCTCGGCGA GCCATTGTGCAGCAGTTTGTGGCCCCTGGTGGCCTCGGCGA < 41bp 0.510956968961026 0.819570345707008 NA NA prediction 0.617226753491965 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50827893 chr10:50827892 nonsynonymous SNV 0.599 4 20 hm7G_associated_SNPs_12741 0 0 0 0 1 CHAT chr10:50827962 5'GT 50827962 Upstream 71bp 12109 chr1 23189562 23189562 1 + G T UCEC 23189563 + 23189543 23189583 41 GACTTTCAAGGCCAACCAAGGGGATGAGGCCTGTACCCACT GACTTTCAAGGCCAACCAATGGGATGAGGCCTGTACCCACT < 41bp 0.488053243882082 0.80860202827169 NA NA prediction 0.617204056543381 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23189563 chr1:23189562 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_12742 0 0 0 0 1 EPHB2 chr1:23189530 3'AG 23189530 Downstream 33bp 12110 chr19 7923169 7923169 1 + G T UCEC 7923170 + 7923150 7923190 41 AGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCACAGAGC AGTGCAGCTCGGCGGCCGATGACCTGCAGAAGGCACAGAGC < 41bp 0.479921756913568 0.808529821313693 NA NA prediction 0.617059642627386 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923170 chr19:7923169 nonsynonymous SNV 0.862 1 20 hm7G_associated_SNPs_12745 0 0 0 0 2 EVI5L chr19:7923077 3'AG 7923077 Downstream 93bp 12111 chr19 7923169 7923169 1 + G T UCEC 7923170 + 7923150 7923190 41 AGTGCAGCTCGGCGGCCGAGGACCTGCAGAAGGCACAGAGC AGTGCAGCTCGGCGGCCGATGACCTGCAGAAGGCACAGAGC < 41bp 0.479921756913568 0.808529821313693 NA NA prediction 0.617059642627386 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7923170 chr19:7923169 nonsynonymous SNV 0.862 1 20 hm7G_associated_SNPs_12745 0 0 0 0 2 EVI5L chr19:7923217 5'GT 7923217 Upstream 49bp 12112 chr11 118982005 118982005 1 + G T STAD 118982006 + 118981986 118982026 41 AGCCACCCATGATGCCCCAGGCTCAGCCAGCCATCCCCAGA AGCCACCCATGATGCCCCATGCTCAGCCAGCCATCCCCAGA < 41bp 0.479394992140364 0.808492045129399 NA NA prediction 0.616984090258799 Functional Gain - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118982006 chr11:118982005 nonsynonymous SNV 0.424 0 20 hm7G_associated_SNPs_12746 0 0 0 0 2 C2CD2L chr11:118981973 3'AG 118981973 Downstream 33bp 12113 chr11 118982005 118982005 1 + G T STAD 118982006 + 118981986 118982026 41 AGCCACCCATGATGCCCCAGGCTCAGCCAGCCATCCCCAGA AGCCACCCATGATGCCCCATGCTCAGCCAGCCATCCCCAGA < 41bp 0.479394992140364 0.808492045129399 NA NA prediction 0.616984090258799 Functional Gain - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118982006 chr11:118982005 nonsynonymous SNV 0.424 0 20 hm7G_associated_SNPs_12746 0 0 0 0 2 C2CD2L chr11:118982084 5'GT 118982084 Upstream 80bp 12114 chr11 1097227 1097227 1 + G T THCA 1097228 + 1097208 1097248 41 ACTGCCCTACAAGAAGTACGGGCTGGAGGTGTACCAGTCTG ACTGCCCTACAAGAAGTACTGGCTGGAGGTGTACCAGTCTG < 41bp 0.500370170696012 0.808830972307832 NA NA prediction 0.61692160322364 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1097228 chr11:1097227 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_12747 0 0 0 0 1 MUC2 chr11:1097182 3'AG 1097182 Downstream 46bp 12115 chr11 10517180 10517180 1 + G T UCEC 10517181 + 10517161 10517201 41 GCCACGGCTCTCCATCTACGGCCGCAGTCCTGAGGAGTGGC GCCACGGCTCTCCATCTACTGCCGCAGTCCTGAGGAGTGGC < 41bp 0.518454814787333 0.826910917958815 NA NA prediction 0.616912206342966 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10517181 chr11:10517180 nonsynonymous SNV 0.954 5 20 hm7G_associated_SNPs_12748 0 0 1 0 1 AMPD3 chr11:10517117 3'AG 10517117 Downstream 64bp 12116 chr3 15057714 15057714 1 + G T LUAD 15057715 + 15057695 15057735 41 GGGAAGACGGACGTCCAGCGGCCCCAGGTGGTAGAGTACTG GGGAAGACGGACGTCCAGCTGCCCCAGGTGGTAGAGTACTG < 41bp 0.512162182394274 0.820515545430632 NA NA prediction 0.616706726072717 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15057715 chr3:15057714 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12749 0 0 1 0 2 NR2C2 chr3:15057659 3'AG 15057659 Downstream 56bp 12117 chr3 15057714 15057714 1 + G T LUAD 15057715 + 15057695 15057735 41 GGGAAGACGGACGTCCAGCGGCCCCAGGTGGTAGAGTACTG GGGAAGACGGACGTCCAGCTGCCCCAGGTGGTAGAGTACTG < 41bp 0.512162182394274 0.820515545430632 NA NA prediction 0.616706726072717 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15057715 chr3:15057714 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12749 0 0 1 0 2 NR2C2 chr3:15057761 5'GT 15057761 Upstream 48bp 12118 chr22 31006915 31006915 1 + G T COAD 31006916 + 31006896 31006936 41 GGCCAGCACCTCTTACCTTGGATGGACCGGCTTTCCCTGGA GGCCAGCACCTCTTACCTTTGATGGACCGGCTTTCCCTGGA < 41bp 0.515356629696202 0.82370188312288 NA NA prediction 0.616690506853357 Functional Gain - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31006916 chr22:31006915 nonsynonymous SNV 0.917 3 20 hm7G_associated_SNPs_12751 0 0 0 0 1 TCN2 chr22:31006858 3'AG 31006858 Downstream 58bp 12119 chr9 91972454 91972454 1 + G T STAD 91972455 + 91972435 91972475 41 AGTTCCTGTCAGTGTGGTGGGGATCTTCAGCTATGATGGGG AGTTCCTGTCAGTGTGGTGTGGATCTTCAGCTATGATGGGG < 41bp 0.49676867630042 0.808296651546462 NA NA prediction 0.616593303092925 Functional Gain - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91972455 chr9:91972454 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_12753 0 0 1 0 1 SECISBP2 chr9:91972480 5'GT 91972480 Upstream 27bp 12120 chr5 176794499 176794499 1 + G T COAD 176794500 + 176794480 176794520 41 CCTGCTAGCCGAAGCCGAGGGACGCCCTCTGCGGGAACCTG CCTGCTAGCCGAAGCCGAGTGACGCCCTCTGCGGGAACCTG < 41bp 0.48101849884265 0.808257231242033 NA NA prediction 0.616514462484066 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176794500 chr5:176794499 stopgain 0.982 1 20 hm7G_associated_SNPs_12754 0 0 0 0 2 RGS14 chr5:176794415 3'AG 176794415 Downstream 85bp 12121 chr5 176794499 176794499 1 + G T COAD 176794500 + 176794480 176794520 41 CCTGCTAGCCGAAGCCGAGGGACGCCCTCTGCGGGAACCTG CCTGCTAGCCGAAGCCGAGTGACGCCCTCTGCGGGAACCTG < 41bp 0.48101849884265 0.808257231242033 NA NA prediction 0.616514462484066 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176794500 chr5:176794499 stopgain 0.982 1 20 hm7G_associated_SNPs_12754 0 0 0 0 2 RGS14 chr5:176794558 5'GT 176794558 Upstream 60bp 12122 chr20 31672750 31672750 1 + G T LIHC 31672751 + 31672731 31672771 41 GTCCGTGCGGCTCCTGCCCGGCGTGGGTGTCTACCTGAGCT GTCCGTGCGGCTCCTGCCCTGCGTGGGTGTCTACCTGAGCT < 41bp 0.490581702858068 0.808256672939442 NA NA prediction 0.616513345878884 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31672751 chr20:31672750 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_12755 0 0 0 0 2 BPIFB4 chr20:31672698 3'AG 31672698 Downstream 53bp 12123 chr20 31672750 31672750 1 + G T LIHC 31672751 + 31672731 31672771 41 GTCCGTGCGGCTCCTGCCCGGCGTGGGTGTCTACCTGAGCT GTCCGTGCGGCTCCTGCCCTGCGTGGGTGTCTACCTGAGCT < 41bp 0.490581702858068 0.808256672939442 NA NA prediction 0.616513345878884 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31672751 chr20:31672750 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_12755 0 0 0 0 2 BPIFB4 chr20:31672802 5'GT 31672802 Upstream 53bp 12124 chr2 29245076 29245076 1 + G T UCEC 29245077 + 29245057 29245097 41 CTCCTGAATGGGAAGAAGAGGAGGAGATGGATCTTAGAGCC CTCCTGAATGGGAAGAAGATGAGGAGATGGATCTTAGAGCC < 41bp 0.505871109139198 0.814081150703675 NA NA prediction 0.616420083128956 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29245077 chr2:29245076 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_12757 0 0 0 0 2 TOGARAM2 chr2:29245024 3'AG 29245024 Downstream 53bp 12125 chr2 29245076 29245076 1 + G T UCEC 29245077 + 29245057 29245097 41 CTCCTGAATGGGAAGAAGAGGAGGAGATGGATCTTAGAGCC CTCCTGAATGGGAAGAAGATGAGGAGATGGATCTTAGAGCC < 41bp 0.505871109139198 0.814081150703675 NA NA prediction 0.616420083128956 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29245077 chr2:29245076 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_12757 0 0 0 0 2 TOGARAM2 chr2:29245174 5'GT 29245174 Upstream 99bp 12126 chr1 233489571 233489571 1 + G T SARC 233489572 + 233489552 233489592 41 GCTATGGAGTGCTGCTGTGGGAACTGCTCACCGGAGAAGTC GCTATGGAGTGCTGCTGTGTGAACTGCTCACCGGAGAAGTC < 41bp 0.495231230279738 0.808185693813633 NA NA prediction 0.616371387627267 Functional Gain - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233489572 chr1:233489571 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12759 0 0 1 0 1 MAP3K21 chr1:233489553 3'AG 233489553 Downstream 19bp 12127 chr16 5058578 5058578 1 + G T UCEC 5058579 + 5058559 5058599 41 CGGGCAGCTGATCGACAAAGGCTGGGTCCTGGGCAGGGATT CGGGCAGCTGATCGACAAATGCTGGGTCCTGGGCAGGGATT < 41bp 0.490163304301424 0.808167127695433 NA NA prediction 0.616334255390866 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5058579 chr16:5058578 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_12760 0 0 0 0 1 SEC14L5 chr16:5058649 5'GT 5058649 Upstream 72bp 12128 chr11 66260363 66260363 1 + G T UCEC 66260364 + 66260344 66260384 41 TGGCTCCGGCATCCCTGCCGGCATCAACATCCCCAACTGTG TGGCTCCGGCATCCCTGCCTGCATCAACATCCCCAACTGTG < 41bp 0.518233212901296 0.826375921884801 NA NA prediction 0.616285417967012 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66260364 chr11:66260363 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_12761 0 0 1 0 1 DPP3 chr11:66260381 5'GT 66260381 Upstream 19bp 12129 chr22 33254086 33254086 1 + G T UCEC 33254087 + 33254067 33254107 41 TCACCCTCTCCCAGCGCAAGGGGCTGAACTATCGGTATCAC TCACCCTCTCCCAGCGCAATGGGCTGAACTATCGGTATCAC < 41bp 0.514027785211804 0.822167366905333 NA NA prediction 0.616279163387056 Functional Gain - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33254087 chr22:33254086 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12762 0 0 1 0 2 TIMP3 chr22:33254004 3'AG 33254004 Downstream 83bp 12130 chr22 33254086 33254086 1 + G T UCEC 33254087 + 33254067 33254107 41 TCACCCTCTCCCAGCGCAAGGGGCTGAACTATCGGTATCAC TCACCCTCTCCCAGCGCAATGGGCTGAACTATCGGTATCAC < 41bp 0.514027785211804 0.822167366905333 NA NA prediction 0.616279163387056 Functional Gain - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33254087 chr22:33254086 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12762 0 0 1 0 2 TIMP3 chr22:33254125 5'GT 33254125 Upstream 40bp 12131 chr5 23523452 23523452 1 + G T SARC 23523453 + 23523433 23523473 41 GATGGAAAAGATAAATCCTGGGCCAACTGGATGAGGTAAGG GATGGAAAAGATAAATCCTTGGCCAACTGGATGAGGTAAGG < 41bp 0.494209519421806 0.808085438488681 NA NA prediction 0.616170876977362 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23523453 chr5:23523452 nonsynonymous SNV 0.216 0 20 hm7G_associated_SNPs_12764 0 0 0 0 2 PRDM9 chr5:23523400 3'AG 23523400 Downstream 53bp 12132 chr5 23523452 23523452 1 + G T SARC 23523453 + 23523433 23523473 41 GATGGAAAAGATAAATCCTGGGCCAACTGGATGAGGTAAGG GATGGAAAAGATAAATCCTTGGCCAACTGGATGAGGTAAGG < 41bp 0.494209519421806 0.808085438488681 NA NA prediction 0.616170876977362 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23523453 chr5:23523452 nonsynonymous SNV 0.216 0 20 hm7G_associated_SNPs_12764 0 0 0 0 2 PRDM9 chr5:23523467 5'GT 23523467 Upstream 16bp 12133 chr17 27009799 27009799 1 + G T UCS 27009800 + 27009780 27009820 41 CAGTTTGGGGAGAACCTGCGGGATAGCTACCAGCGGCACGA CAGTTTGGGGAGAACCTGCTGGATAGCTACCAGCGGCACGA < 41bp 0.521858784559274 0.829915785854485 NA NA prediction 0.616114002590421 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27009800 chr17:27009799 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_12765 0 0 1 0 2 SUPT6H chr17:27009745 3'AG 27009745 Downstream 55bp 12134 chr17 27009799 27009799 1 + G T UCS 27009800 + 27009780 27009820 41 CAGTTTGGGGAGAACCTGCGGGATAGCTACCAGCGGCACGA CAGTTTGGGGAGAACCTGCTGGATAGCTACCAGCGGCACGA < 41bp 0.521858784559274 0.829915785854485 NA NA prediction 0.616114002590421 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27009800 chr17:27009799 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_12765 0 0 1 0 2 SUPT6H chr17:27009874 5'GT 27009874 Upstream 76bp 12135 chr7 128483553 128483553 1 + G T UCEC 128483554 + 128483534 128483574 41 AGTTTGCAGGGACAGCCAAGGGCGAGGTTGTGCGGGACTTT AGTTTGCAGGGACAGCCAATGGCGAGGTTGTGCGGGACTTT < 41bp 0.490031204756054 0.808051115046821 NA NA prediction 0.616102230093643 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128483554 chr7:128483553 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12766 0 0 1 0 2 FLNC chr7:128483462 3'AG 128483462 Downstream 92bp 12136 chr7 128483553 128483553 1 + G T UCEC 128483554 + 128483534 128483574 41 AGTTTGCAGGGACAGCCAAGGGCGAGGTTGTGCGGGACTTT AGTTTGCAGGGACAGCCAATGGCGAGGTTGTGCGGGACTTT < 41bp 0.490031204756054 0.808051115046821 NA NA prediction 0.616102230093643 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128483554 chr7:128483553 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12766 0 0 1 0 2 FLNC chr7:128483631 5'GT 128483631 Upstream 79bp 12137 chr22 26743838 26743838 1 + G T COAD 26743839 + 26743819 26743859 41 GACACCCTCACCTGCCAGTGGGACCTCAGCTGGAGCAGCGA GACACCCTCACCTGCCAGTTGGACCTCAGCTGGAGCAGCGA < 41bp 0.52133171340867 0.829370635518965 NA NA prediction 0.61607784422059 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26743839 chr22:26743838 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12767 0 0 0 0 1 SEZ6L chr22:26743879 5'GT 26743879 Upstream 42bp 12138 chr1 230822734 230822734 1 + G T LIHC 230822735 + 230822715 230822755 41 AGGAGATCAAGAAACCTTTGGTAACTGGTAGCAAAGAACCT AGGAGATCAAGAAACCTTTTGTAACTGGTAGCAAAGAACCT < 41bp 0.500112204889128 0.808150670795509 NA NA prediction 0.616076931812761 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230822735 chr1:230822734 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_12768 0 0 0 0 1 COG2 chr1:230822681 3'AG 230822681 Downstream 54bp 12139 chr8 143614706 143614706 1 + G T LUAD 143614707 + 143614687 143614727 41 CCGCTGCTGGCGCTGACCTGGATGTCGGCTGTGCTCGCCGT CCGCTGCTGGCGCTGACCTTGATGTCGGCTGTGCTCGCCGT < 41bp 0.51907178692669 0.827071034273396 NA NA prediction 0.615998494693413 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143614707 chr8:143614706 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12770 0 0 0 0 1 ADGRB1 chr8:143614656 3'AG 143614656 Downstream 51bp 12140 chr19 7509283 7509283 1 + G T UCEC 7509284 + 7509264 7509304 41 GCCGCCAGGAGTCCCTGGAGGAGGGCAGTGACCGGAATTAT GCCGCCAGGAGTCCCTGGATGAGGGCAGTGACCGGAATTAT < 41bp 0.491741998387685 0.807995348311286 NA NA prediction 0.615990696622572 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7509284 chr19:7509283 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12771 0 0 0 0 1 ARHGEF18 chr19:7509340 5'GT 7509340 Upstream 58bp 12141 chr9 136402557 136402557 1 + G T LUAD 136402558 + 136402538 136402578 41 AACATCCAATAGCCTGGAGGGGGGCACCGACGCCACGGCCT AACATCCAATAGCCTGGAGTGGGGCACCGACGCCACGGCCT < 41bp 0.481342593451039 0.807966222725502 NA NA prediction 0.615932445451004 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136402558 chr9:136402557 nonsynonymous SNV 0.803 1 20 hm7G_associated_SNPs_12772 0 0 0 0 1 ADAMTSL2 chr9:136402527 3'AG 136402527 Downstream 31bp 12142 chr19 15640597 15640597 1 + G T COAD 15640598 + 15640578 15640618 41 ATGTACTCTTGGTATGGATGGGACCTGTCCTGCCGCTGTTG ATGTACTCTTGGTATGGATTGGACCTGTCCTGCCGCTGTTG < 41bp 0.483501763308837 0.807953236600684 NA NA prediction 0.615906473201367 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15640598 chr19:15640597 nonsynonymous SNV 0.267 1 20 hm7G_associated_SNPs_12773 0 0 0 0 2 CYP4F22 chr19:15640520 3'AG 15640520 Downstream 78bp 12143 chr19 15640597 15640597 1 + G T COAD 15640598 + 15640578 15640618 41 ATGTACTCTTGGTATGGATGGGACCTGTCCTGCCGCTGTTG ATGTACTCTTGGTATGGATTGGACCTGTCCTGCCGCTGTTG < 41bp 0.483501763308837 0.807953236600684 NA NA prediction 0.615906473201367 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15640598 chr19:15640597 nonsynonymous SNV 0.267 1 20 hm7G_associated_SNPs_12773 0 0 0 0 2 CYP4F22 chr19:15640664 5'GT 15640664 Upstream 68bp 12144 chr17 36634074 36634074 1 + G T COAD 36634075 + 36634055 36634095 41 AATATCTCTTTCAGGCTGAGGACCGGGATGACATGCTGGGC AATATCTCTTTCAGGCTGATGACCGGGATGACATGCTGGGC < 41bp 0.497326103413749 0.8079396032024 NA NA prediction 0.6158792064048 Functional Gain - ARHGAP23 ENSG00000225485 CDS Human other chr17:36634075 chr17:36634074 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12774 0 0 0 0 1 ARHGAP23 chr17:36634137 5'GT 36634137 Upstream 64bp 12145 chr1 150315901 150315901 1 + G T COAD 150315902 + 150315882 150315922 41 ACAAGAAAAAGTCAGGCTGGGCCTGATGCCTCCTCCAGAAC ACAAGAAAAAGTCAGGCTGTGCCTGATGCCTCCTCCAGAAC < 41bp 0.504801804426294 0.812706350798075 NA NA prediction 0.615809092743562 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150315902 chr1:150315901 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_12776 0 0 1 0 1 PRPF3 chr1:150315928 5'GT 150315928 Upstream 28bp 12146 chr19 35790509 35790509 1 + G T UCEC 35790510 + 35790490 35790530 41 TGGCAGGCACGGAGGTGGAGGTCAGCTGCATGGTGCCGGAC TGGCAGGCACGGAGGTGGATGTCAGCTGCATGGTGCCGGAC < 41bp 0.518349009195172 0.826232948124932 NA NA prediction 0.615767877859521 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35790510 chr19:35790509 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12778 0 0 0 0 1 MAG chr19:35790457 3'AG 35790457 Downstream 53bp 12147 chr15 76463462 76463462 1 + G T LUSC 76463463 + 76463443 76463483 41 GGATCTGGAGGGTGAAGAGGGTCATTGATGGTGAGTGGCCC GGATCTGGAGGGTGAAGAGTGTCATTGATGGTGAGTGGCCC < 41bp 0.505060270223036 0.812914824386688 NA NA prediction 0.615709108327305 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76463463 chr15:76463462 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12779 0 0 0 0 1 TMEM266 chr15:76463472 5'GT 76463472 Upstream 11bp 12148 chr5 159659130 159659130 1 + G T COAD 159659131 + 159659111 159659151 41 CCAGCGATGTAATCGAAAAGGCCCGCAACTTCAAGATCGTC CCAGCGATGTAATCGAAAATGCCCGCAACTTCAAGATCGTC < 41bp 0.516372337608783 0.824215883794048 NA NA prediction 0.615687092370529 Functional Gain - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159659131 chr5:159659130 nonsynonymous SNV 0.722 2 20 hm7G_associated_SNPs_12780 0 0 0 0 1 FABP6 chr5:159659105 3'AG 159659105 Downstream 26bp 12149 chr10 105128238 105128238 1 + G T BLCA 105128239 + 105128219 105128259 41 CTGCGGCCCCCGACCCTCCGGGCACTGGCGCTTCGGGGGCC CTGCGGCCCCCGACCCTCCTGGCACTGGCGCTTCGGGGGCC < 41bp 0.499784471766357 0.807837719142204 NA NA prediction 0.615675438284409 Functional Gain - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105128239 chr10:105128238 synonymous SNV . 0 20 hm7G_associated_SNPs_12781 0 0 1 0 1 TAF5 chr10:105128305 5'GT 105128305 Upstream 68bp 12150 chr11 67067552 67067552 1 + G T LUSC 67067553 + 67067533 67067573 41 AACTTCAGCCTGGAGTCACGGAACATTGGCCGCCCCATCGA AACTTCAGCCTGGAGTCACTGAACATTGGCCGCCCCATCGA < 41bp 0.490812316761323 0.807819112819608 NA NA prediction 0.615638225639216 Functional Gain - ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67067553 chr11:67067552 nonsynonymous SNV 0.784 4 20 hm7G_associated_SNPs_12782 0 0 1 0 2 ANKRD13D chr11:67067464 3'AG 67067464 Downstream 89bp 12151 chr11 67067552 67067552 1 + G T LUSC 67067553 + 67067533 67067573 41 AACTTCAGCCTGGAGTCACGGAACATTGGCCGCCCCATCGA AACTTCAGCCTGGAGTCACTGAACATTGGCCGCCCCATCGA < 41bp 0.490812316761323 0.807819112819608 NA NA prediction 0.615638225639216 Functional Gain - ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67067553 chr11:67067552 nonsynonymous SNV 0.784 4 20 hm7G_associated_SNPs_12782 0 0 1 0 2 ANKRD13D chr11:67067594 5'GT 67067594 Upstream 43bp 12152 chr16 1712802 1712802 1 + G T LUAD 1712803 + 1712783 1712823 41 CCAAAGCCCCGGAAGCTGCGGAACCGGCACCTGCGGAAGCC CCAAAGCCCCGGAAGCTGCTGAACCGGCACCTGCGGAAGCC < 41bp 0.523863421361629 0.831681133387506 NA NA prediction 0.615635424051755 Functional Gain - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1712803 chr16:1712802 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_12783 0 0 1 0 2 CRAMP1 chr16:1712762 3'AG 1712762 Downstream 41bp 12153 chr16 1712802 1712802 1 + G T LUAD 1712803 + 1712783 1712823 41 CCAAAGCCCCGGAAGCTGCGGAACCGGCACCTGCGGAAGCC CCAAAGCCCCGGAAGCTGCTGAACCGGCACCTGCGGAAGCC < 41bp 0.523863421361629 0.831681133387506 NA NA prediction 0.615635424051755 Functional Gain - CRAMP1 ENSG00000007545 CDS Human protein_coding chr16:1712803 chr16:1712802 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_12783 0 0 1 0 2 CRAMP1 chr16:1712836 5'GT 1712836 Upstream 35bp 12154 chr17 73748568 73748568 1 + G T LUAD 73748569 + 73748549 73748589 41 TATCGTGGACGCCCAGAGCGGGGAGGACTACGACAGCTTCC TATCGTGGACGCCCAGAGCTGGGAGGACTACGACAGCTTCC < 41bp 0.509630592502943 0.81739703924552 NA NA prediction 0.615532893485155 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73748569 chr17:73748568 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_12784 0 0 0 0 2 ITGB4 chr17:73748527 3'AG 73748527 Downstream 42bp 12155 chr17 73748568 73748568 1 + G T LUAD 73748569 + 73748549 73748589 41 TATCGTGGACGCCCAGAGCGGGGAGGACTACGACAGCTTCC TATCGTGGACGCCCAGAGCTGGGAGGACTACGACAGCTTCC < 41bp 0.509630592502943 0.81739703924552 NA NA prediction 0.615532893485155 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73748569 chr17:73748568 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_12784 0 0 0 0 2 ITGB4 chr17:73748658 5'GT 73748658 Upstream 91bp 12156 chr17 78032419 78032419 1 + G T UCEC 78032420 + 78032400 78032440 41 AAGAAGGCCGAGACGGAGAGGATCCGGGCAGAAATCGAGAA AAGAAGGCCGAGACGGAGATGATCCGGGCAGAAATCGAGAA < 41bp 0.507351246602967 0.815077186899341 NA NA prediction 0.615451880592749 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78032420 chr17:78032419 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_12785 0 0 1 0 1 CCDC40 chr17:78032450 5'GT 78032450 Upstream 32bp 12157 chr13 113439493 113439493 1 + G T SARC 113439494 + 113439474 113439514 41 ACAGCAGGACCATCTACGTGGGACACAGGGAGCCACCTCCG ACAGCAGGACCATCTACGTTGGACACAGGGAGCCACCTCCG < 41bp 0.478411123706458 0.807672180259778 NA NA prediction 0.615344360519556 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113439494 chr13:113439493 synonymous SNV . 0 20 hm7G_associated_SNPs_12787 0 0 1 0 1 ATP11A chr13:113439571 5'GT 113439571 Upstream 79bp 12158 chr19 1271175 1271175 1 + G T LUSC 1271176 + 1271156 1271196 41 AGGGAGACCCAGAGATCTCGGGGATTTGGGTTTGTCACCTT AGGGAGACCCAGAGATCTCTGGGATTTGGGTTTGTCACCTT < 41bp 0.483504091479393 0.807652025140297 NA NA prediction 0.615304050280594 Functional Gain - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271176 chr19:1271175 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_12789 0 0 1 1 3 CIRBP chr19:1271120 3'AG 1271120 Downstream 56bp 12159 chr19 1271175 1271175 1 + G T LUSC 1271176 + 1271156 1271196 41 AGGGAGACCCAGAGATCTCGGGGATTTGGGTTTGTCACCTT AGGGAGACCCAGAGATCTCTGGGATTTGGGTTTGTCACCTT < 41bp 0.483504091479393 0.807652025140297 NA NA prediction 0.615304050280594 Functional Gain - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271176 chr19:1271175 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_12789 0 0 1 1 3 CIRBP chr19:1271139 3'AG 1271139 Downstream 37bp 12160 chr19 1271175 1271175 1 + G T LUSC 1271176 + 1271156 1271196 41 AGGGAGACCCAGAGATCTCGGGGATTTGGGTTTGTCACCTT AGGGAGACCCAGAGATCTCTGGGATTTGGGTTTGTCACCTT < 41bp 0.483504091479393 0.807652025140297 NA NA prediction 0.615304050280594 Functional Gain - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271176 chr19:1271175 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_12789 0 0 1 1 3 CIRBP chr19:1271245 5'GT 1271245 Upstream 71bp 12161 chr1 154317523 154317523 1 + G T THCA 154317524 + 154317504 154317544 41 AAAGCTGTCATCTGCTGCCGGGTGACCCCCTTGCAGAAGGC AAAGCTGTCATCTGCTGCCTGGTGACCCCCTTGCAGAAGGC < 41bp 0.485322587629463 0.807649559111168 NA NA prediction 0.615299118222335 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154317524 chr1:154317523 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_12790 0 0 1 0 1 ATP8B2 chr1:154317447 3'AG 154317447 Downstream 77bp 12162 chr11 7669710 7669710 1 + G T COAD 7669711 + 7669691 7669731 41 CAGTATGTGATCTTTGCCAGGCAGTGGGTATCTTCTGGCCA CAGTATGTGATCTTTGCCATGCAGTGGGTATCTTCTGGCCA < 41bp 0.489877970715278 0.807633012132812 NA NA prediction 0.615266024265623 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669711 chr11:7669710 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12791 0 0 0 0 2 PPFIBP2 chr11:7669618 3'AG 7669618 Downstream 93bp 12163 chr11 7669710 7669710 1 + G T COAD 7669711 + 7669691 7669731 41 CAGTATGTGATCTTTGCCAGGCAGTGGGTATCTTCTGGCCA CAGTATGTGATCTTTGCCATGCAGTGGGTATCTTCTGGCCA < 41bp 0.489877970715278 0.807633012132812 NA NA prediction 0.615266024265623 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669711 chr11:7669710 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12791 0 0 0 0 2 PPFIBP2 chr11:7669768 5'GT 7669768 Upstream 59bp 12164 chr22 29630304 29630304 1 + G T UCEC 29630305 + 29630285 29630325 41 CTTACACAGGGACTGCGTGGGGAGCCTGGCCCCCAAGGCTC CTTACACAGGGACTGCGTGTGGAGCCTGGCCCCCAAGGCTC < 41bp 0.516878857254477 0.824465041228884 NA NA prediction 0.615172367948813 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29630305 chr22:29630304 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12792 0 0 0 0 2 EMID1 chr22:29630294 3'AG 29630294 Downstream 11bp 12165 chr22 29630304 29630304 1 + G T UCEC 29630305 + 29630285 29630325 41 CTTACACAGGGACTGCGTGGGGAGCCTGGCCCCCAAGGCTC CTTACACAGGGACTGCGTGTGGAGCCTGGCCCCCAAGGCTC < 41bp 0.516878857254477 0.824465041228884 NA NA prediction 0.615172367948813 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29630305 chr22:29630304 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12792 0 0 0 0 2 EMID1 chr22:29630338 5'GT 29630338 Upstream 35bp 12166 chr16 68072009 68072009 1 + G T UCEC 68072010 + 68071990 68072030 41 GTAGGGACTCTTCCAATGAGGCTGCTGGCCCTGGATTATGG GTAGGGACTCTTCCAATGATGCTGCTGGCCCTGGATTATGG < 41bp 0.494341490166204 0.807583624827883 NA NA prediction 0.615167249655767 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68072010 chr16:68072009 nonsynonymous SNV 0.849 4 20 hm7G_associated_SNPs_12793 0 0 1 0 1 DUS2 chr16:68072052 5'GT 68072052 Upstream 44bp 12167 chr7 72755306 72755306 1 + G T COAD 72755307 + 72755287 72755327 41 ACTGAGTATCAAAAGGCCCGGGATTTTCTAGTTCGAGCCCA ACTGAGTATCAAAAGGCCCTGGATTTTCTAGTTCGAGCCCA < 41bp 0.506697559890253 0.814277802879038 NA NA prediction 0.615160485977569 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72755307 chr7:72755306 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_12794 0 0 0 0 1 FKBP6 chr7:72755272 3'AG 72755272 Downstream 35bp 12168 chr12 6437022 6437022 1 + G T LUSC 6437023 + 6437003 6437043 41 GAGGGGGCCGAGGAGCCCCGGGACAGCAGGCCACGGAAGCT GAGGGGGCCGAGGAGCCCCTGGACAGCAGGCCACGGAAGCT < 41bp 0.512708925752291 0.820280661040545 NA NA prediction 0.615143470576507 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6437023 chr12:6437022 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_12795 0 0 0 0 1 PLEKHG6 chr12:6437112 5'GT 6437112 Upstream 91bp 12169 chr1 150234657 150234657 1 + G T rs34714364 150234658 + 150234638 150234678 41 GTCAGAAAGGATCCCCAGGGGGGTCAGAACACCAGATCAAC GTCAGAAAGGATCCCCAGGTGGGTCAGAACACCAGATCAAC < 41bp 0.503548335387344 0.81108933860689 NA NA prediction 0.615082006439091 Functional Gain - CA14 ENSG00000118298 CDS Human protein_coding chr1:150234658 chr1:150234657 synonymous SNV . 0 20 hm7G_associated_SNPs_12796 0 1 0 0 1 CA14 chr1:150234699 5'GT 150234699 Upstream 43bp 12170 chr5 156755049 156755049 1 + G T UCEC 156755050 + 156755030 156755070 41 TTGCTTACTACAAAGCCATGGCTGGCAGGTAGGAAAGCCCC TTGCTTACTACAAAGCCATTGCTGGCAGGTAGGAAAGCCCC < 41bp 0.514169728446633 0.821710662238471 NA NA prediction 0.615081867583676 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156755050 chr5:156755049 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_12797 0 0 0 0 2 CYFIP2 chr5:156754981 3'AG 156754981 Downstream 69bp 12171 chr5 156755049 156755049 1 + G T UCEC 156755050 + 156755030 156755070 41 TTGCTTACTACAAAGCCATGGCTGGCAGGTAGGAAAGCCCC TTGCTTACTACAAAGCCATTGCTGGCAGGTAGGAAAGCCCC < 41bp 0.514169728446633 0.821710662238471 NA NA prediction 0.615081867583676 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156755050 chr5:156755049 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_12797 0 0 0 0 2 CYFIP2 chr5:156755057 5'GT 156755057 Upstream 9bp 12172 chr11 76830153 76830153 1 + G T BLCA 76830154 + 76830134 76830174 41 CAAAGCGGTCTACGCGCCGGGAGGGCAAGGGTGAGAACCTG CAAAGCGGTCTACGCGCCGTGAGGGCAAGGGTGAGAACCTG < 41bp 0.524712897430095 0.832246223493477 NA NA prediction 0.615066652126765 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76830154 chr11:76830153 synonymous SNV . 0 20 hm7G_associated_SNPs_12798 0 0 0 0 2 CAPN5 chr11:76830076 3'AG 76830076 Downstream 78bp 12173 chr11 76830153 76830153 1 + G T BLCA 76830154 + 76830134 76830174 41 CAAAGCGGTCTACGCGCCGGGAGGGCAAGGGTGAGAACCTG CAAAGCGGTCTACGCGCCGTGAGGGCAAGGGTGAGAACCTG < 41bp 0.524712897430095 0.832246223493477 NA NA prediction 0.615066652126765 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76830154 chr11:76830153 synonymous SNV . 0 20 hm7G_associated_SNPs_12798 0 0 0 0 2 CAPN5 chr11:76830198 5'GT 76830198 Upstream 46bp 12174 chr12 2929953 2929953 1 + G T PAAD 2929954 + 2929934 2929974 41 ACTGATGGTGTCTCAGCCAGGTTGTGCGTATGCAATTCTAC ACTGATGGTGTCTCAGCCATGTTGTGCGTATGCAATTCTAC < 41bp 0.512922060419321 0.820452064364492 NA NA prediction 0.615060007890342 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2929954 chr12:2929953 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12799 0 0 0 1 2 ITFG2 chr12:2929890 3'AG 2929890 Downstream 64bp 12175 chr12 2929953 2929953 1 + G T PAAD 2929954 + 2929934 2929974 41 ACTGATGGTGTCTCAGCCAGGTTGTGCGTATGCAATTCTAC ACTGATGGTGTCTCAGCCATGTTGTGCGTATGCAATTCTAC < 41bp 0.512922060419321 0.820452064364492 NA NA prediction 0.615060007890342 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2929954 chr12:2929953 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_12799 0 0 0 1 2 ITFG2 chr12:2930038 5'GT 2930038 Upstream 86bp 12176 chr2 88383986 88383986 1 + G T LUAD 88383987 + 88383967 88384007 41 TTCGGCCATCAAGAGATATGGGAAGGTGCCCAATGAGAACA TTCGGCCATCAAGAGATATTGGAAGGTGCCCAATGAGAACA < 41bp 0.506232374833585 0.813744225545195 NA NA prediction 0.615023701423221 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88383987 chr2:88383986 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_12800 0 0 0 0 2 SMYD1 chr2:88383991 5'GT 88383991 Upstream 6bp 12177 chr2 88383986 88383986 1 + G T LUAD 88383987 + 88383967 88384007 41 TTCGGCCATCAAGAGATATGGGAAGGTGCCCAATGAGAACA TTCGGCCATCAAGAGATATTGGAAGGTGCCCAATGAGAACA < 41bp 0.506232374833585 0.813744225545195 NA NA prediction 0.615023701423221 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88383987 chr2:88383986 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_12800 0 0 0 0 2 SMYD1 chr2:88384011 5'GT 88384011 Upstream 26bp 12178 chr7 100320317 100320317 1 + G T LGG 100320318 + 100320298 100320338 41 GGCCGTAGAAGTCTGGCAGGGCCTGGCCCTGCTGTCGGAAG GGCCGTAGAAGTCTGGCAGTGCCTGGCCCTGCTGTCGGAAG < 41bp 0.517024231311723 0.824523630652191 NA NA prediction 0.614998798680936 Functional Gain - EPO ENSG00000130427 CDS Human protein_coding chr7:100320318 chr7:100320317 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_12801 0 0 1 0 1 EPO chr7:100320287 3'AG 100320287 Downstream 31bp 12179 chr11 64026369 64026369 1 + G T COAD 64026370 + 64026350 64026390 41 TCCGCAGGGCAAAGCAACAGGCAAAGATGGCTGAGTACTGC TCCGCAGGGCAAAGCAACATGCAAAGATGGCTGAGTACTGC < 41bp 0.492025156660707 0.807490386958809 NA NA prediction 0.614980773917618 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64026370 chr11:64026369 nonsynonymous SNV 0.939 4 20 hm7G_associated_SNPs_12802 0 0 1 0 2 PLCB3 chr11:64026357 3'AG 64026357 Downstream 13bp 12180 chr11 64026369 64026369 1 + G T COAD 64026370 + 64026350 64026390 41 TCCGCAGGGCAAAGCAACAGGCAAAGATGGCTGAGTACTGC TCCGCAGGGCAAAGCAACATGCAAAGATGGCTGAGTACTGC < 41bp 0.492025156660707 0.807490386958809 NA NA prediction 0.614980773917618 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64026370 chr11:64026369 nonsynonymous SNV 0.939 4 20 hm7G_associated_SNPs_12802 0 0 1 0 2 PLCB3 chr11:64026441 5'GT 64026441 Upstream 73bp 12181 chr9 37732369 37732369 1 + G T LUAD 37732370 + 37732350 37732390 41 GCTCTGCACTCCGACTCGCGGCTCTGCACATCCAGGAACGG GCTCTGCACTCCGACTCGCTGCTCTGCACATCCAGGAACGG < 41bp 0.519647519754656 0.827126832309134 NA NA prediction 0.614958625108958 Functional Gain - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37732370 chr9:37732369 synonymous SNV . 0 20 hm7G_associated_SNPs_12803 0 0 0 0 1 FRMPD1 chr9:37732301 3'AG 37732301 Downstream 69bp 12182 chr8 144801528 144801528 1 + G T UCEC 144801529 + 144801509 144801549 41 CCAGATACACCCTTGGGGTGGACATGTGGAGTCTGGGCTGT CCAGATACACCCTTGGGGTTGACATGTGGAGTCTGGGCTGT < 41bp 0.516839524852414 0.824312948834055 NA NA prediction 0.614946847963282 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144801529 chr8:144801528 synonymous SNV . 0 20 hm7G_associated_SNPs_12804 0 0 1 0 1 MAPK15 chr8:144801513 3'AG 144801513 Downstream 16bp 12183 chr11 66366615 66366615 1 + G T UCEC 66366616 + 66366596 66366636 41 ATGTGGAGGTGCACTTGGAGGACCAGATGGTCTTGGTACAC ATGTGGAGGTGCACTTGGATGACCAGATGGTCTTGGTACAC < 41bp 0.509745142498881 0.817156621551077 NA NA prediction 0.614822958104394 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66366616 chr11:66366615 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_12806 0 0 1 0 1 CCS chr11:66366587 3'AG 66366587 Downstream 29bp 12184 chr15 45453951 45453951 1 + G T COAD 45453952 + 45453932 45453972 41 CCAGGAGTGACCCACCTGCGGTTCCAGCGGCCCCAGGGCTT CCAGGAGTGACCCACCTGCTGTTCCAGCGGCCCCAGGGCTT < 41bp 0.511970580894149 0.819358766150826 NA NA prediction 0.614776370513355 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45453952 chr15:45453951 nonsynonymous SNV 0.900 1 20 hm7G_associated_SNPs_12807 0 0 0 0 1 DUOX1 chr15:45453936 3'AG 45453936 Downstream 16bp 12185 chr19 10132068 10132068 1 + G T STAD 10132069 + 10132049 10132089 41 CTCTATCTCCCAGCCTCCAGGAAGCTGTTTTGCTCCGTGGG CTCTATCTCCCAGCCTCCATGAAGCTGTTTTGCTCCGTGGG < 41bp 0.498884557428452 0.807361037582329 NA NA prediction 0.614722075164658 Functional Gain - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10132069 chr19:10132068 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_12808 0 0 0 0 1 RDH8 chr19:10132114 5'GT 10132114 Upstream 47bp 12186 chr20 61941827 61941827 1 + G T BLCA 61941828 + 61941808 61941848 41 TTCCCCATCTATGAGGGCGGGGTTGGCGAAGGCCTGCGGGG TTCCCCATCTATGAGGGCGTGGTTGGCGAAGGCCTGCGGGG < 41bp 0.498192880552287 0.807345187580719 NA NA prediction 0.614690375161437 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61941828 chr20:61941827 nonsynonymous SNV 0.014 1 20 hm7G_associated_SNPs_12809 0 0 0 0 2 COL20A1 chr20:61941733 3'AG 61941733 Downstream 95bp 12187 chr20 61941827 61941827 1 + G T BLCA 61941828 + 61941808 61941848 41 TTCCCCATCTATGAGGGCGGGGTTGGCGAAGGCCTGCGGGG TTCCCCATCTATGAGGGCGTGGTTGGCGAAGGCCTGCGGGG < 41bp 0.498192880552287 0.807345187580719 NA NA prediction 0.614690375161437 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61941828 chr20:61941827 nonsynonymous SNV 0.014 1 20 hm7G_associated_SNPs_12809 0 0 0 0 2 COL20A1 chr20:61941862 5'GT 61941862 Upstream 36bp 12188 chr10 134014365 134014365 1 + G T STAD 134014366 + 134014346 134014386 41 CGGGGACCTCCAGGTGACAGGCAGCGCCCACTGCACCTTCA CGGGGACCTCCAGGTGACATGCAGCGCCCACTGCACCTTCA < 41bp 0.523667978823433 0.83100213407258 NA NA prediction 0.614668310498293 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014366 chr10:134014365 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_12810 0 0 0 0 1 DPYSL4 chr10:134014346 3'AG 134014346 Downstream 20bp 12189 chr16 3705914 3705914 1 + G T SKCM 3705915 + 3705895 3705935 41 AGCCACCTGACTGCCGTGGGGAAGCTGCTGGACAACCTCAA AGCCACCTGACTGCCGTGGTGAAGCTGCTGGACAACCTCAA < 41bp 0.499426218315482 0.807315311970605 NA NA prediction 0.61463062394121 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3705915 chr16:3705914 nonsynonymous SNV 0.970 1 20 hm7G_associated_SNPs_12811 0 0 1 0 2 DNASE1 chr16:3705850 3'AG 3705850 Downstream 65bp 12190 chr16 3705914 3705914 1 + G T SKCM 3705915 + 3705895 3705935 41 AGCCACCTGACTGCCGTGGGGAAGCTGCTGGACAACCTCAA AGCCACCTGACTGCCGTGGTGAAGCTGCTGGACAACCTCAA < 41bp 0.499426218315482 0.807315311970605 NA NA prediction 0.61463062394121 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3705915 chr16:3705914 nonsynonymous SNV 0.970 1 20 hm7G_associated_SNPs_12811 0 0 1 0 2 DNASE1 chr16:3705938 5'GT 3705938 Upstream 25bp 12191 chr6 168430309 168430309 1 + G T LUSC 168430310 + 168430290 168430330 41 CAGCGTGAGAAGCAGGCCAGGCCTGGGTCTGGAGCCGTCCT CAGCGTGAGAAGCAGGCCATGCCTGGGTCTGGAGCCGTCCT < 41bp 0.497612081458275 0.807295897061366 NA NA prediction 0.614591794122732 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168430310 chr6:168430309 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_12813 0 0 0 0 1 KIF25 chr6:168430357 5'GT 168430357 Upstream 49bp 12192 chr3 14523257 14523257 1 + G T OV 14523258 + 14523238 14523278 41 GTACCCCAACTGGGCCATTGGGCTGGGCTGGAGCCTGGCCC GTACCCCAACTGGGCCATTTGGCTGGGCTGGAGCCTGGCCC < 41bp 0.524292945144636 0.831566789225607 NA NA prediction 0.614547688161943 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14523258 chr3:14523257 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_12814 0 0 1 0 2 SLC6A6 chr3:14523179 3'AG 14523179 Downstream 79bp 12193 chr3 14523257 14523257 1 + G T OV 14523258 + 14523238 14523278 41 GTACCCCAACTGGGCCATTGGGCTGGGCTGGAGCCTGGCCC GTACCCCAACTGGGCCATTTGGCTGGGCTGGAGCCTGGCCC < 41bp 0.524292945144636 0.831566789225607 NA NA prediction 0.614547688161943 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14523258 chr3:14523257 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_12814 0 0 1 0 2 SLC6A6 chr3:14523349 5'GT 14523349 Upstream 93bp 12194 chr10 118960736 118960736 1 + G T OV 118960737 + 118960717 118960757 41 AAGCCTCAGTGGTTTAACAGGACCACACACTGGTCCTTCCT AAGCCTCAGTGGTTTAACATGACCACACACTGGTCCTTCCT < 41bp 0.499534210088172 0.807266596175851 NA NA prediction 0.614533192351701 Functional Gain - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960737 chr10:118960736 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_12815 0 0 0 0 2 KCNK18 chr10:118960670 3'AG 118960670 Downstream 67bp 12195 chr10 118960736 118960736 1 + G T OV 118960737 + 118960717 118960757 41 AAGCCTCAGTGGTTTAACAGGACCACACACTGGTCCTTCCT AAGCCTCAGTGGTTTAACATGACCACACACTGGTCCTTCCT < 41bp 0.499534210088172 0.807266596175851 NA NA prediction 0.614533192351701 Functional Gain - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960737 chr10:118960736 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_12815 0 0 0 0 2 KCNK18 chr10:118960798 5'GT 118960798 Upstream 63bp 12196 chr7 143036698 143036698 1 + G T LUSC 143036699 + 143036679 143036719 41 TCTACAAGATCCTACCTGGGGGCTATGCAGTAATTGGTGAG TCTACAAGATCCTACCTGGTGGCTATGCAGTAATTGGTGAG < 41bp 0.495841577538037 0.80723521445636 NA NA prediction 0.614470428912721 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143036699 chr7:143036698 synonymous SNV . 0 20 hm7G_associated_SNPs_12818 0 0 0 0 2 CLCN1 chr7:143036604 3'AG 143036604 Downstream 95bp 12197 chr7 143036698 143036698 1 + G T LUSC 143036699 + 143036679 143036719 41 TCTACAAGATCCTACCTGGGGGCTATGCAGTAATTGGTGAG TCTACAAGATCCTACCTGGTGGCTATGCAGTAATTGGTGAG < 41bp 0.495841577538037 0.80723521445636 NA NA prediction 0.614470428912721 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143036699 chr7:143036698 synonymous SNV . 0 20 hm7G_associated_SNPs_12818 0 0 0 0 2 CLCN1 chr7:143036714 5'GT 143036714 Upstream 17bp 12198 chr8 74234977 74234977 1 + G T SARC 74234978 + 74234958 74234998 41 GTGTGAAGCAGGCCATGAAGGCCATCCTCACTGACCAGCCC GTGTGAAGCAGGCCATGAATGCCATCCTCACTGACCAGCCC < 41bp 0.519440468683446 0.826671576546076 NA NA prediction 0.61446221572526 Functional Gain - RDH10 ENSG00000121039 CDS Human protein_coding chr8:74234978 chr8:74234977 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_12819 0 0 1 0 2 RDH10 chr8:74234914 3'AG 74234914 Downstream 64bp 12199 chr8 74234977 74234977 1 + G T SARC 74234978 + 74234958 74234998 41 GTGTGAAGCAGGCCATGAAGGCCATCCTCACTGACCAGCCC GTGTGAAGCAGGCCATGAATGCCATCCTCACTGACCAGCCC < 41bp 0.519440468683446 0.826671576546076 NA NA prediction 0.61446221572526 Functional Gain - RDH10 ENSG00000121039 CDS Human protein_coding chr8:74234978 chr8:74234977 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_12819 0 0 1 0 2 RDH10 chr8:74235045 5'GT 74235045 Upstream 69bp 12200 chr16 632279 632279 1 + G T LUSC 632280 + 632260 632300 41 TCCGTGTCCTCCGGCACGAGGCCGGCAGGCCCCTCCGCCTC TCCGTGTCCTCCGGCACGATGCCGGCAGGCCCCTCCGCCTC < 41bp 0.510702053592743 0.817929394560884 NA NA prediction 0.614454681936283 Functional Gain - PIGQ ENSG00000007541 CDS Human protein_coding chr16:632280 chr16:632279 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_12820 0 0 1 0 2 PIGQ chr16:632248 3'AG 632248 Downstream 32bp 12201 chr16 632279 632279 1 + G T LUSC 632280 + 632260 632300 41 TCCGTGTCCTCCGGCACGAGGCCGGCAGGCCCCTCCGCCTC TCCGTGTCCTCCGGCACGATGCCGGCAGGCCCCTCCGCCTC < 41bp 0.510702053592743 0.817929394560884 NA NA prediction 0.614454681936283 Functional Gain - PIGQ ENSG00000007541 CDS Human protein_coding chr16:632280 chr16:632279 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_12820 0 0 1 0 2 PIGQ chr16:632309 5'GT 632309 Upstream 31bp 12202 chr20 3025467 3025467 1 + G T LUAD 3025468 + 3025448 3025488 41 TTCACAGGAAGCGACACCTGGCACGGACACTGCTGGTGAGT TTCACAGGAAGCGACACCTTGCACGGACACTGCTGGTGAGT < 41bp 0.507004053862715 0.814216341186212 NA NA prediction 0.614424574646994 Functional Gain - GNRH2 ENSG00000125787 CDS Human protein_coding chr20:3025468 chr20:3025467 synonymous SNV . 0 20 hm7G_associated_SNPs_12821 0 0 0 0 1 GNRH2 chr20:3025482 5'GT 3025482 Upstream 16bp 12203 chr19 47858387 47858387 1 + G T THCA 47858388 + 47858368 47858408 41 CTCCTGCGACAAATCCAGCGGGAACCCAGCCTGCCCCAGTA CTCCTGCGACAAATCCAGCTGGAACCCAGCCTGCCCCAGTA < 41bp 0.480650527956339 0.80720501030929 NA NA prediction 0.614410020618581 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47858388 chr19:47858387 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_12822 0 0 1 0 1 DHX34 chr19:47858296 3'AG 47858296 Downstream 92bp 12204 chrX 153696202 153696202 1 + G T LUAD 153696203 + 153696183 153696223 41 CCATGATGGGGCTGGCGGCGGGGGGTGGGCTCCTGCTGCTG CCATGATGGGGCTGGCGGCTGGGGGTGGGCTCCTGCTGCTG < 41bp 0.518258517669382 0.825445978359073 NA NA prediction 0.614374921379382 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696203 chrX:153696202 synonymous SNV . 0 20 hm7G_associated_SNPs_12823 0 0 0 0 1 PLXNA3 chrX:153696110 3'AG 153696110 Downstream 93bp 12205 chr15 25222069 25222069 1 + G T UCEC 25222070 + 25222050 25222090 41 TGGAGCTGCTGGAGGCCCTGGGGTTGGTAGGGCAGCTGGTA TGGAGCTGCTGGAGGCCCTTGGGTTGGTAGGGCAGCTGGTA < 41bp 0.526520500472433 0.833624737602474 NA NA prediction 0.614208474260082 Functional Gain - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222070 chr15:25222069 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_12825 0 0 1 1 1 SNRPN chr15:25222024 3'AG 25222024 Downstream 46bp 12206 chr2 233398998 233398998 1 + G T STAD 233398999 + 233398979 233399019 41 ATGAGCTGAAGCCAGCTGTGGATGGGGCAAACTTCATTGTT ATGAGCTGAAGCCAGCTGTTGATGGGGCAAACTTCATTGTT < 41bp 0.498404010322776 0.807103256996474 NA NA prediction 0.614206513992948 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233398999 chr2:233398998 synonymous SNV . 0 20 hm7G_associated_SNPs_12826 0 0 0 0 2 CHRND chr2:233398934 3'AG 233398934 Downstream 65bp 12207 chr2 233398998 233398998 1 + G T STAD 233398999 + 233398979 233399019 41 ATGAGCTGAAGCCAGCTGTGGATGGGGCAAACTTCATTGTT ATGAGCTGAAGCCAGCTGTTGATGGGGCAAACTTCATTGTT < 41bp 0.498404010322776 0.807103256996474 NA NA prediction 0.614206513992948 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233398999 chr2:233398998 synonymous SNV . 0 20 hm7G_associated_SNPs_12826 0 0 0 0 2 CHRND chr2:233399052 5'GT 233399052 Upstream 55bp 12208 chr22 21370357 21370357 1 + G T UCEC 21370358 + 21370338 21370378 41 GAAACCGGCTGTGGGATGTGGCCGACTTCGTGAAGCCACCT GAAACCGGCTGTGGGATGTTGCCGACTTCGTGAAGCCACCT < 41bp 0.486135063434157 0.807096635711849 NA NA prediction 0.614193271423699 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21370358 chr22:21370357 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_12827 0 0 0 0 1 P2RX6 chr22:21370381 5'GT 21370381 Upstream 25bp 12209 chr2 128367143 128367143 1 + G T LGG 128367144 + 128367124 128367164 41 ACACAGTCCCCATGGCGGAGGAGCCTGAGGAGGATGTGGAT ACACAGTCCCCATGGCGGATGAGCCTGAGGAGGATGTGGAT < 41bp 0.491792797393861 0.807093089848142 NA NA prediction 0.614186179696284 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128367144 chr2:128367143 nonsynonymous SNV 0.120 1 20 hm7G_associated_SNPs_12828 0 0 0 0 1 MYO7B chr2:128367081 3'AG 128367081 Downstream 63bp 12210 chr17 27026826 27026826 1 + G T UCEC 27026827 + 27026807 27026847 41 ATGTAACGGTGACTCCAGAGGGATTCCGGTACCGGGGCCAG ATGTAACGGTGACTCCAGATGGATTCCGGTACCGGGGCCAG < 41bp 0.508778017237631 0.815868132863915 NA NA prediction 0.614180231252567 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27026827 chr17:27026826 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_12829 0 0 1 0 2 SUPT6H chr17:27026799 3'AG 27026799 Downstream 28bp 12211 chr17 27026826 27026826 1 + G T UCEC 27026827 + 27026807 27026847 41 ATGTAACGGTGACTCCAGAGGGATTCCGGTACCGGGGCCAG ATGTAACGGTGACTCCAGATGGATTCCGGTACCGGGGCCAG < 41bp 0.508778017237631 0.815868132863915 NA NA prediction 0.614180231252567 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27026827 chr17:27026826 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_12829 0 0 1 0 2 SUPT6H chr17:27026911 5'GT 27026911 Upstream 86bp 12212 chr5 131607056 131607056 1 + G T UCEC 131607057 + 131607037 131607077 41 GAGTCGACCTGGGCTCCGAGGTGTACAGGATGCTGCGGGAG GAGTCGACCTGGGCTCCGATGTGTACAGGATGCTGCGGGAG < 41bp 0.511177218865849 0.818264100805119 NA NA prediction 0.614173763878541 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131607057 chr5:131607056 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_12830 0 0 1 0 1 PDLIM4 chr5:131606996 3'AG 131606996 Downstream 61bp 12213 chr16 81314494 81314494 1 + G T UCEC 81314495 + 81314475 81314515 41 GCACAAATTTAATCAAAGTGGCATCTACAACAGCCACGGCC GCACAAATTTAATCAAAGTTGCATCTACAACAGCCACGGCC < 41bp 0.499685929171643 0.807085660058326 NA NA prediction 0.614171320116653 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81314495 chr16:81314494 synonymous SNV . 0 20 hm7G_associated_SNPs_12831 0 0 0 0 2 BCO1 chr16:81314462 3'AG 81314462 Downstream 33bp 12214 chr16 81314494 81314494 1 + G T UCEC 81314495 + 81314475 81314515 41 GCACAAATTTAATCAAAGTGGCATCTACAACAGCCACGGCC GCACAAATTTAATCAAAGTTGCATCTACAACAGCCACGGCC < 41bp 0.499685929171643 0.807085660058326 NA NA prediction 0.614171320116653 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81314495 chr16:81314494 synonymous SNV . 0 20 hm7G_associated_SNPs_12831 0 0 0 0 2 BCO1 chr16:81314567 5'GT 81314567 Upstream 74bp 12215 chr10 43606872 43606872 1 + G T LUAD 43606873 + 43606853 43606893 41 ACCGACCAGCAGACCTCTAGGCAGGCCCAGGCCCAGCTGCT ACCGACCAGCAGACCTCTATGCAGGCCCAGGCCCAGCTGCT < 41bp 0.481058178074041 0.807048646975068 NA NA prediction 0.614097293950135 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43606873 chr10:43606872 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_12832 0 0 0 0 1 RET chr10:43606913 5'GT 43606913 Upstream 42bp 12216 chr9 116973287 116973287 1 + G T BLCA 116973288 + 116973268 116973308 41 CCTGGCGTTCCTGGCAAGAGGGGCAAGATGGGTATGCCGGT CCTGGCGTTCCTGGCAAGATGGGCAAGATGGGTATGCCGGT < 41bp 0.498633207898251 0.807046273916496 NA NA prediction 0.614092547832992 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116973288 chr9:116973287 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12833 0 0 1 0 2 COL27A1 chr9:116973262 3'AG 116973262 Downstream 26bp 12217 chr9 116973287 116973287 1 + G T BLCA 116973288 + 116973268 116973308 41 CCTGGCGTTCCTGGCAAGAGGGGCAAGATGGGTATGCCGGT CCTGGCGTTCCTGGCAAGATGGGCAAGATGGGTATGCCGGT < 41bp 0.498633207898251 0.807046273916496 NA NA prediction 0.614092547832992 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:116973288 chr9:116973287 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12833 0 0 1 0 2 COL27A1 chr9:116973306 5'GT 116973306 Upstream 20bp 12218 chr4 1017664 1017664 1 + G T COAD 1017665 + 1017645 1017685 41 GGTGATCGCACGGCCCGTGGGTAGCTCCGTGCGGCTCAAGT GGTGATCGCACGGCCCGTGTGTAGCTCCGTGCGGCTCAAGT < 41bp 0.497290436104432 0.80703214659949 NA NA prediction 0.61406429319898 Functional Gain - FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1017665 chr4:1017664 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_12834 0 0 0 0 1 FGFRL1 chr4:1017605 3'AG 1017605 Downstream 60bp 12219 chr11 67254515 67254515 1 + G T UCEC 67254516 + 67254496 67254536 41 CGCTGCACAGTGACGACGAGGGCACCGTGCTGGACGACAGC CGCTGCACAGTGACGACGATGGCACCGTGCTGGACGACAGC < 41bp 0.528873433369425 0.835905566793219 NA NA prediction 0.614064266847589 Functional Gain - AIP ENSG00000110711 CDS Human protein_coding chr11:67254516 chr11:67254515 nonsynonymous SNV 0.045 1 20 hm7G_associated_SNPs_12835 0 0 1 0 1 AIP chr11:67254477 3'AG 67254477 Downstream 39bp 12220 chr11 197684 197684 1 + G T UCEC 197685 + 197665 197705 41 GTAAACCCCAAGATACTGAGGACTGGCAAGGACCTTGGCCC GTAAACCCCAAGATACTGATGACTGGCAAGGACCTTGGCCC < 41bp 0.498291610876831 0.807012321976871 NA NA prediction 0.614024643953742 Functional Gain - ODF3 ENSG00000177947 CDS Human protein_coding chr11:197685 chr11:197684 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_12836 0 0 0 0 1 ODF3 chr11:197761 5'GT 197761 Upstream 78bp 12221 chr17 74902180 74902180 1 + G T UCEC 74902181 + 74902161 74902201 41 TGAAGGGCGGGCCCCTAGGGGAGATGGTGCAGTGGGCGGAC TGAAGGGCGGGCCCCTAGGTGAGATGGTGCAGTGGGCGGAC < 41bp 0.480421710295794 0.806993625908302 NA NA prediction 0.613987251816603 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74902181 chr17:74902180 synonymous SNV . 0 20 hm7G_associated_SNPs_12837 0 0 0 0 2 MGAT5B chr17:74902100 3'AG 74902100 Downstream 81bp 12222 chr17 74902180 74902180 1 + G T UCEC 74902181 + 74902161 74902201 41 TGAAGGGCGGGCCCCTAGGGGAGATGGTGCAGTGGGCGGAC TGAAGGGCGGGCCCCTAGGTGAGATGGTGCAGTGGGCGGAC < 41bp 0.480421710295794 0.806993625908302 NA NA prediction 0.613987251816603 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74902181 chr17:74902180 synonymous SNV . 0 20 hm7G_associated_SNPs_12837 0 0 0 0 2 MGAT5B chr17:74902269 5'GT 74902269 Upstream 90bp 12223 chr11 45893701 45893701 1 + G T UCEC 45893702 + 45893682 45893722 41 GCAAGCTGGAAGCAGCCGAGGAACCACCTGGTGAAGAACTC GCAAGCTGGAAGCAGCCGATGAACCACCTGGTGAAGAACTC < 41bp 0.518123550163543 0.825100591653184 NA NA prediction 0.613954082979283 Functional Gain - CRY2 ENSG00000121671 CDS Human protein_coding chr11:45893702 chr11:45893701 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_12838 0 0 1 0 1 CRY2 chr11:45893643 3'AG 45893643 Downstream 59bp 12224 chr11 61133627 61133627 1 + G T LUAD 61133628 + 61133608 61133648 41 CTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGT CTATTCCATAAGTTCAAAGTGACCATCATCCTGACAGCTGT < 41bp 0.50909193903878 0.816046687438223 NA NA prediction 0.613909496798886 Functional Gain - TMEM138 ENSG00000149483 CDS Human protein_coding chr11:61133628 chr11:61133627 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12840 0 0 1 0 1 TMEM138 chr11:61133688 5'GT 61133688 Upstream 62bp 12225 chr3 112998289 112998289 1 + G T LUSC 112998290 + 112998270 112998310 41 GGCTGTCCGTGGAGATCACGGGCCTAGAGAAAGGTAGGGGC GGCTGTCCGTGGAGATCACTGGCCTAGAGAAAGGTAGGGGC < 41bp 0.484109925473564 0.806938488026797 NA NA prediction 0.613876976053594 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112998290 chr3:112998289 synonymous SNV . 0 20 hm7G_associated_SNPs_12842 0 0 0 0 1 BOC chr3:112998302 5'GT 112998302 Upstream 14bp 12226 chr17 34964404 34964404 1 + G T CESC 34964405 + 34964385 34964425 41 CTCCTCACCATCCTGCCCCGGCGCCAGCTGCCTCCTGGACT CTCCTCACCATCCTGCCCCTGCGCCAGCTGCCTCCTGGACT < 41bp 0.486670621999726 0.806879930423624 NA NA prediction 0.613759860847248 Functional Gain - MRM1 ENSG00000129282 CDS Human other chr17:34964405 chr17:34964404 nonsynonymous SNV 0.092 1 20 hm7G_associated_SNPs_12843 0 0 0 0 2 MRM1 chr17:34964335 3'AG 34964335 Downstream 70bp 12227 chr17 34964404 34964404 1 + G T CESC 34964405 + 34964385 34964425 41 CTCCTCACCATCCTGCCCCGGCGCCAGCTGCCTCCTGGACT CTCCTCACCATCCTGCCCCTGCGCCAGCTGCCTCCTGGACT < 41bp 0.486670621999726 0.806879930423624 NA NA prediction 0.613759860847248 Functional Gain - MRM1 ENSG00000129282 CDS Human other chr17:34964405 chr17:34964404 nonsynonymous SNV 0.092 1 20 hm7G_associated_SNPs_12843 0 0 0 0 2 MRM1 chr17:34964454 5'GT 34964454 Upstream 51bp 12228 chr17 61564064 61564064 1 + G T UCEC 61564065 + 61564045 61564085 41 GGGCAGCACTGCCTGCCCAGGAGCTGGAGGAGGTGTGTGGC GGGCAGCACTGCCTGCCCATGAGCTGGAGGAGGTGTGTGGC < 41bp 0.50994472927175 0.816811839032106 NA NA prediction 0.613734219520711 Functional Gain - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61564065 chr17:61564064 nonsynonymous SNV 0.099 1 20 hm7G_associated_SNPs_12844 0 0 0 0 1 ACE chr17:61564076 5'GT 61564076 Upstream 13bp 12229 chr10 50854622 50854622 1 + G T UCEC 50854623 + 50854603 50854643 41 ATGCCTGGACGCGCCAGGAGGCGTGGAGCTCAGCGACACCC ATGCCTGGACGCGCCAGGATGCGTGGAGCTCAGCGACACCC < 41bp 0.528710811886225 0.835549886061171 NA NA prediction 0.613678148349891 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50854623 chr10:50854622 nonsynonymous SNV 0.025 0 20 hm7G_associated_SNPs_12845 0 0 0 0 2 CHAT chr10:50854551 3'AG 50854551 Downstream 72bp 12230 chr10 50854622 50854622 1 + G T UCEC 50854623 + 50854603 50854643 41 ATGCCTGGACGCGCCAGGAGGCGTGGAGCTCAGCGACACCC ATGCCTGGACGCGCCAGGATGCGTGGAGCTCAGCGACACCC < 41bp 0.528710811886225 0.835549886061171 NA NA prediction 0.613678148349891 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50854623 chr10:50854622 nonsynonymous SNV 0.025 0 20 hm7G_associated_SNPs_12845 0 0 0 0 2 CHAT chr10:50854720 5'GT 50854720 Upstream 99bp 12231 chrX 591819 591819 1 + G T LUAD 591820 + 591800 591840 41 CCAGGACATCACGGAGGGCGGCGGCCACTGCCCGGTGCATT CCAGGACATCACGGAGGGCTGCGGCCACTGCCCGGTGCATT < 41bp 0.508675092327747 0.815509794480232 NA NA prediction 0.61366940430497 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:591820 chrX:591819 nonsynonymous SNV 0.416 3 20 hm7G_associated_SNPs_12846 0 0 0 0 1 SHOX chrX:591909 5'GT 591909 Upstream 91bp 12232 chr15 31220764 31220764 1 + G T LUSC 31220765 + 31220745 31220785 41 CCTTGTCTTAGGGATTCATGGCGAAGGGTCCACCTTCAGCA CCTTGTCTTAGGGATTCATTGCGAAGGGTCCACCTTCAGCA < 41bp 0.518164223511121 0.824975866248908 NA NA prediction 0.613623285475574 Functional Gain - FAN1 ENSG00000198690 CDS Human protein_coding chr15:31220765 chr15:31220764 nonsynonymous SNV 0.942 3 20 hm7G_associated_SNPs_12847 0 0 1 0 2 FAN1 chr15:31220756 3'AG 31220756 Downstream 9bp 12233 chr15 31220764 31220764 1 + G T LUSC 31220765 + 31220745 31220785 41 CCTTGTCTTAGGGATTCATGGCGAAGGGTCCACCTTCAGCA CCTTGTCTTAGGGATTCATTGCGAAGGGTCCACCTTCAGCA < 41bp 0.518164223511121 0.824975866248908 NA NA prediction 0.613623285475574 Functional Gain - FAN1 ENSG00000198690 CDS Human protein_coding chr15:31220765 chr15:31220764 nonsynonymous SNV 0.942 3 20 hm7G_associated_SNPs_12847 0 0 1 0 2 FAN1 chr15:31220859 5'GT 31220859 Upstream 96bp 12234 chr11 64055924 64055924 1 + G T LUAD 64055925 + 64055905 64055945 41 GGCTTCTTCCGGGTGCACCGGCCCCCACAGGACCTGGTAAG GGCTTCTTCCGGGTGCACCTGCCCCCACAGGACCTGGTAAG < 41bp 0.490082685994679 0.806788762851455 NA NA prediction 0.613577525702911 Functional Gain - GPR137 ENSG00000173264 CDS Human protein_coding chr11:64055925 chr11:64055924 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12848 0 0 1 0 1 GPR137 chr11:64055940 5'GT 64055940 Upstream 17bp 12235 chr11 65048613 65048613 1 + G T GBM 65048614 + 65048594 65048634 41 GGAATATTCTCTGTTTCCTGGACAGGTGAGATTGGAGGAGT GGAATATTCTCTGTTTCCTTGACAGGTGAGATTGGAGGAGT < 41bp 0.497286695440255 0.8067805030748 NA NA prediction 0.6135610061496 Functional Gain - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048614 chr11:65048613 stopgain 0.995 1 20 hm7G_associated_SNPs_12849 0 0 1 0 1 POLA2 chr11:65048618 5'GT 65048618 Upstream 6bp 12236 chr17 7405852 7405852 1 + G T LUAD 7405853 + 7405833 7405873 41 CCAGGATACATCCAGCGGCGGCTGATCAAGTCCATGGAGTC CCAGGATACATCCAGCGGCTGCTGATCAAGTCCATGGAGTC < 41bp 0.487872100139978 0.806773611486869 NA NA prediction 0.613547222973738 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7405853 chr17:7405852 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_12850 0 0 1 0 1 POLR2A chr17:7405837 3'AG 7405837 Downstream 16bp 12237 chr6 24423246 24423246 1 + G T LUAD 24423247 + 24423227 24423267 41 GCGCCTGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCAT GCGCCTGCTTTCATTCCTTTGACGACAGCTAGAAGCTCCAT < 41bp 0.499909278375702 0.80675625587411 NA NA prediction 0.613512511748219 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423247 chr6:24423246 stopgain 0.995 1 20 hm7G_associated_SNPs_12852 0 0 1 0 2 MRS2 chr6:24423165 3'AG 24423165 Downstream 82bp 12238 chr6 24423246 24423246 1 + G T LUAD 24423247 + 24423227 24423267 41 GCGCCTGCTTTCATTCCTTGGACGACAGCTAGAAGCTCCAT GCGCCTGCTTTCATTCCTTTGACGACAGCTAGAAGCTCCAT < 41bp 0.499909278375702 0.80675625587411 NA NA prediction 0.613512511748219 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24423247 chr6:24423246 stopgain 0.995 1 20 hm7G_associated_SNPs_12852 0 0 1 0 2 MRS2 chr6:24423278 5'GT 24423278 Upstream 33bp 12239 chrX 13607730 13607730 1 + G T UCEC 13607731 + 13607711 13607751 41 GCCTGGGGTCTGTCACTATGGAACTAAACTGGCCTGCTGCT GCCTGGGGTCTGTCACTATTGAACTAAACTGGCCTGCTGCT < 41bp 0.514227937631642 0.820983816023292 NA NA prediction 0.6135117567833 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607731 chrX:13607730 stopgain 0.992 1 20 hm7G_associated_SNPs_12853 0 0 0 0 3 EGFL6 chrX:13607675 3'AG 13607675 Downstream 56bp 12240 chrX 13607730 13607730 1 + G T UCEC 13607731 + 13607711 13607751 41 GCCTGGGGTCTGTCACTATGGAACTAAACTGGCCTGCTGCT GCCTGGGGTCTGTCACTATTGAACTAAACTGGCCTGCTGCT < 41bp 0.514227937631642 0.820983816023292 NA NA prediction 0.6135117567833 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607731 chrX:13607730 stopgain 0.992 1 20 hm7G_associated_SNPs_12853 0 0 0 0 3 EGFL6 chrX:13607681 3'AG 13607681 Downstream 50bp 12241 chrX 13607730 13607730 1 + G T UCEC 13607731 + 13607711 13607751 41 GCCTGGGGTCTGTCACTATGGAACTAAACTGGCCTGCTGCT GCCTGGGGTCTGTCACTATTGAACTAAACTGGCCTGCTGCT < 41bp 0.514227937631642 0.820983816023292 NA NA prediction 0.6135117567833 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607731 chrX:13607730 stopgain 0.992 1 20 hm7G_associated_SNPs_12853 0 0 0 0 3 EGFL6 chrX:13607787 5'GT 13607787 Upstream 58bp 12242 chr3 47378188 47378188 1 + G T COAD 47378189 + 47378169 47378209 41 TACGGCTGAGCACTGTGGAGGCCTACAACCCGGAGACAGAC TACGGCTGAGCACTGTGGATGCCTACAACCCGGAGACAGAC < 41bp 0.512925126082147 0.819678087887735 NA NA prediction 0.613505923611177 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47378189 chr3:47378188 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_12854 0 0 1 0 1 KLHL18 chr3:47378247 5'GT 47378247 Upstream 60bp 12243 chr1 236906308 236906308 1 + G T OV 236906309 + 236906289 236906329 41 CACCTGGCTGAGAAGTTCAGGCAGAAGGCCTCAACGCACGA CACCTGGCTGAGAAGTTCATGCAGAAGGCCTCAACGCACGA < 41bp 0.488350666118801 0.80672448195867 NA NA prediction 0.613448963917339 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236906309 chr1:236906308 nonsynonymous SNV 0.907 1 20 hm7G_associated_SNPs_12855 0 0 0 0 2 ACTN2 chr1:236906219 3'AG 236906219 Downstream 90bp 12244 chr1 236906308 236906308 1 + G T OV 236906309 + 236906289 236906329 41 CACCTGGCTGAGAAGTTCAGGCAGAAGGCCTCAACGCACGA CACCTGGCTGAGAAGTTCATGCAGAAGGCCTCAACGCACGA < 41bp 0.488350666118801 0.80672448195867 NA NA prediction 0.613448963917339 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236906309 chr1:236906308 nonsynonymous SNV 0.907 1 20 hm7G_associated_SNPs_12855 0 0 0 0 2 ACTN2 chr1:236906343 5'GT 236906343 Upstream 36bp 12245 chr2 79254209 79254209 1 + G T ESCA 79254210 + 79254190 79254230 41 CTGGTGTCTGTGCTCAGTGGGGCTGAGGGATCCTTCGTGTC CTGGTGTCTGTGCTCAGTGTGGCTGAGGGATCCTTCGTGTC < 41bp 0.498309121844657 0.806713798815257 NA NA prediction 0.613427597630513 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254210 chr2:79254209 nonsynonymous SNV 0.457 0 20 hm7G_associated_SNPs_12856 0 0 0 0 2 REG3G chr2:79254160 3'AG 79254160 Downstream 50bp 12246 chr2 79254209 79254209 1 + G T ESCA 79254210 + 79254190 79254230 41 CTGGTGTCTGTGCTCAGTGGGGCTGAGGGATCCTTCGTGTC CTGGTGTCTGTGCTCAGTGTGGCTGAGGGATCCTTCGTGTC < 41bp 0.498309121844657 0.806713798815257 NA NA prediction 0.613427597630513 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254210 chr2:79254209 nonsynonymous SNV 0.457 0 20 hm7G_associated_SNPs_12856 0 0 0 0 2 REG3G chr2:79254297 5'GT 79254297 Upstream 89bp 12247 chr12 99052992 99052992 1 + G T LUAD 99052993 + 99052973 99053013 41 GGGAAACAAGACAAATCTGGGCTTCTGATGAAACTGCAGAA GGGAAACAAGACAAATCTGTGCTTCTGATGAAACTGCAGAA < 41bp 0.4955955758038 0.806712294562118 NA NA prediction 0.613424589124236 Functional Gain - APAF1 ENSG00000120868 CDS Human protein_coding chr12:99052993 chr12:99052992 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_12857 0 0 1 0 1 APAF1 chr12:99052938 3'AG 99052938 Downstream 55bp 12248 chr16 25235842 25235842 1 + G T LUAD 25235843 + 25235823 25235863 41 CATCAATGAGAAGACAAAGGGCCCTCTGGCCCCGTTCTCCA CATCAATGAGAAGACAAAGTGCCCTCTGGCCCCGTTCTCCA < 41bp 0.50997089419988 0.816664452206781 NA NA prediction 0.613387116013802 Functional Gain - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25235843 chr16:25235842 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_12858 0 0 0 0 1 AQP8 chr16:25235897 5'GT 25235897 Upstream 56bp 12249 chr17 33510508 33510508 1 + G T LUAD 33510509 + 33510489 33510529 41 TGGTGGTGCTGCTCTGCGGGGAGGATGATGATAAGGTGCAG TGGTGGTGCTGCTCTGCGGTGAGGATGATGATAAGGTGCAG < 41bp 0.514168346450379 0.820854126501987 NA NA prediction 0.613371560103215 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33510509 chr17:33510508 synonymous SNV . 0 20 hm7G_associated_SNPs_12859 0 0 0 0 2 UNC45B chr17:33510446 3'AG 33510446 Downstream 63bp 12250 chr17 33510508 33510508 1 + G T LUAD 33510509 + 33510489 33510529 41 TGGTGGTGCTGCTCTGCGGGGAGGATGATGATAAGGTGCAG TGGTGGTGCTGCTCTGCGGTGAGGATGATGATAAGGTGCAG < 41bp 0.514168346450379 0.820854126501987 NA NA prediction 0.613371560103215 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33510509 chr17:33510508 synonymous SNV . 0 20 hm7G_associated_SNPs_12859 0 0 0 0 2 UNC45B chr17:33510601 5'GT 33510601 Upstream 94bp 12251 chr17 46058096 46058096 1 + G T SARC 46058097 + 46058077 46058117 41 TTACCATGGTGTCAGTGCTGGAGGATCTGATTGGCAAGCTT TTACCATGGTGTCAGTGCTTGAGGATCTGATTGGCAAGCTT < 41bp 0.504859976959019 0.811539753114786 NA NA prediction 0.613359552311535 Functional Gain - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46058097 chr17:46058096 synonymous SNV . 0 20 hm7G_associated_SNPs_12860 0 0 1 0 1 CDK5RAP3 chr17:46058164 5'GT 46058164 Upstream 69bp 12252 chr8 67049401 67049401 1 + G T OV 67049402 + 67049382 67049422 41 AGGGAGTGATCAGCCAGCTGGAAGACACCTGCAAAACTATC AGGGAGTGATCAGCCAGCTTGAAGACACCTGCAAAACTATC < 41bp 0.507771566419719 0.814429261608482 NA NA prediction 0.613315390377527 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67049402 chr8:67049401 synonymous SNV . 0 20 hm7G_associated_SNPs_12861 0 0 0 0 2 TRIM55 chr8:67049330 3'AG 67049330 Downstream 72bp 12253 chr8 67049401 67049401 1 + G T OV 67049402 + 67049382 67049422 41 AGGGAGTGATCAGCCAGCTGGAAGACACCTGCAAAACTATC AGGGAGTGATCAGCCAGCTTGAAGACACCTGCAAAACTATC < 41bp 0.507771566419719 0.814429261608482 NA NA prediction 0.613315390377527 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67049402 chr8:67049401 synonymous SNV . 0 20 hm7G_associated_SNPs_12861 0 0 0 0 2 TRIM55 chr8:67049425 5'GT 67049425 Upstream 25bp 12254 chr2 31484531 31484531 1 + G T LUAD 31484532 + 31484512 31484552 41 TCTATGGCCGGATCGAGCGGGAGCACCAGATCTCACCTGGG TCTATGGCCGGATCGAGCGTGAGCACCAGATCTCACCTGGG < 41bp 0.511157254922665 0.817778298891607 NA NA prediction 0.613242087937883 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31484532 chr2:31484531 synonymous SNV . 0 20 hm7G_associated_SNPs_12862 0 0 1 0 1 EHD3 chr2:31484579 5'GT 31484579 Upstream 49bp 12255 chr2 26502041 26502041 1 + G T LUAD 26502042 + 26502022 26502062 41 TCTCCACCAGTGAGACCATGGGCCACTCTGCAGACCGACTG TCTCCACCAGTGAGACCATTGGCCACTCTGCAGACCGACTG < 41bp 0.532072620618655 0.838671534524203 NA NA prediction 0.613197827811095 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26502042 chr2:26502041 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_12863 0 0 1 0 1 HADHB chr2:26502003 3'AG 26502003 Downstream 39bp 12256 chr11 125475596 125475596 1 + G T LUAD 125475597 + 125475577 125475617 41 AAGACTGGTTCCATCTGTTGGGCAGCTAAGTGTGCCCTTGC AAGACTGGTTCCATCTGTTTGGCAGCTAAGTGTGCCCTTGC < 41bp 0.492290735802848 0.806572849350914 NA NA prediction 0.613145698701827 Functional Gain - STT3A ENSG00000134910 CDS Human protein_coding chr11:125475597 chr11:125475596 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_12865 0 0 1 0 2 STT3A chr11:125475524 3'AG 125475524 Downstream 73bp 12257 chr11 125475596 125475596 1 + G T LUAD 125475597 + 125475577 125475617 41 AAGACTGGTTCCATCTGTTGGGCAGCTAAGTGTGCCCTTGC AAGACTGGTTCCATCTGTTTGGCAGCTAAGTGTGCCCTTGC < 41bp 0.492290735802848 0.806572849350914 NA NA prediction 0.613145698701827 Functional Gain - STT3A ENSG00000134910 CDS Human protein_coding chr11:125475597 chr11:125475596 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_12865 0 0 1 0 2 STT3A chr11:125475630 5'GT 125475630 Upstream 35bp 12258 chr1 165865547 165865547 1 + G T LUAD 165865548 + 165865528 165865568 41 TTTTTGTGGATACAGATGCGGACACCCGGCTCTCACGCAGA TTTTTGTGGATACAGATGCTGACACCCGGCTCTCACGCAGA < 41bp 0.503197029115298 0.809763037175828 NA NA prediction 0.613132016121061 Functional Gain - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165865548 chr1:165865547 synonymous SNV . 0 20 hm7G_associated_SNPs_12866 0 0 1 0 1 UCK2 chr1:165865569 5'GT 165865569 Upstream 23bp 12259 chr17 34171147 34171147 1 + G T HNSC 34171148 + 34171128 34171168 41 GACCCCAAAAGTGGGGATTGGGTTTGCCCTAATCCGTAAGT GACCCCAAAAGTGGGGATTTGGTTTGCCCTAATCCGTAAGT < 41bp 0.509502021374033 0.816067253025989 NA NA prediction 0.613130463303911 Functional Gain - TAF15 ENSG00000172660 CDS Human other chr17:34171148 chr17:34171147 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_12867 0 0 1 0 2 TAF15 chr17:34171081 3'AG 34171081 Downstream 67bp 12260 chr17 34171147 34171147 1 + G T HNSC 34171148 + 34171128 34171168 41 GACCCCAAAAGTGGGGATTGGGTTTGCCCTAATCCGTAAGT GACCCCAAAAGTGGGGATTTGGTTTGCCCTAATCCGTAAGT < 41bp 0.509502021374033 0.816067253025989 NA NA prediction 0.613130463303911 Functional Gain - TAF15 ENSG00000172660 CDS Human other chr17:34171148 chr17:34171147 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_12867 0 0 1 0 2 TAF15 chr17:34171162 5'GT 34171162 Upstream 16bp 12261 chr10 99212667 99212667 1 + G T SARC 99212668 + 99212648 99212688 41 ACAGGTGTGTGCTGAAGATGGATCACCACTGCCGTATCCTT ACAGGTGTGTGCTGAAGATTGATCACCACTGCCGTATCCTT < 41bp 0.510866705323927 0.817422769340248 NA NA prediction 0.613112128032641 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99212668 chr10:99212667 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12868 0 0 1 4 2 ZDHHC16 chr10:99212652 3'AG 99212652 Downstream 16bp 12262 chr10 99212667 99212667 1 + G T SARC 99212668 + 99212648 99212688 41 ACAGGTGTGTGCTGAAGATGGATCACCACTGCCGTATCCTT ACAGGTGTGTGCTGAAGATTGATCACCACTGCCGTATCCTT < 41bp 0.510866705323927 0.817422769340248 NA NA prediction 0.613112128032641 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99212668 chr10:99212667 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12868 0 0 1 4 2 ZDHHC16 chr10:99212680 5'GT 99212680 Upstream 14bp 12263 chr19 35823774 35823774 1 + G T LGG 35823775 + 35823755 35823795 41 AGTGGTCAGCTGGGGCTGAGGATGGAGTCCAAGACTGAGAA AGTGGTCAGCTGGGGCTGATGATGGAGTCCAAGACTGAGAA < 41bp 0.508331902128462 0.814840408397487 NA NA prediction 0.61301701253805 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35823775 chr19:35823774 nonsynonymous SNV 0.155 4 20 hm7G_associated_SNPs_12870 0 0 0 0 1 CD22 chr19:35823827 5'GT 35823827 Upstream 54bp 12264 chr15 43690269 43690269 1 + G T THCA 43690270 + 43690250 43690290 41 GCAAGAGAAGGGCCTTCTCGGGAAACTTCTCCCCGGGAAGC GCAAGAGAAGGGCCTTCTCTGGAAACTTCTCCCCGGGAAGC < 41bp 0.523819062747233 0.830326343220799 NA NA prediction 0.61301456094713 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690270 chr15:43690269 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_12871 0 0 1 0 2 TUBGCP4 chr15:43690236 3'AG 43690236 Downstream 34bp 12265 chr15 43690269 43690269 1 + G T THCA 43690270 + 43690250 43690290 41 GCAAGAGAAGGGCCTTCTCGGGAAACTTCTCCCCGGGAAGC GCAAGAGAAGGGCCTTCTCTGGAAACTTCTCCCCGGGAAGC < 41bp 0.523819062747233 0.830326343220799 NA NA prediction 0.61301456094713 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690270 chr15:43690269 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_12871 0 0 1 0 2 TUBGCP4 chr15:43690239 3'AG 43690239 Downstream 31bp 12266 chr14 74427959 74427959 1 + G T UCEC 74427960 + 74427940 74427980 41 GCCTTCTGAAGCCCACTAAGGTCTCGGCTCGCCAGCTGCCC GCCTTCTGAAGCCCACTAATGTCTCGGCTCGCCAGCTGCCC < 41bp 0.485348982553475 0.806497091855379 NA NA prediction 0.612994183710759 Functional Gain - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74427960 chr14:74427959 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_12872 0 0 0 0 1 COQ6 chr14:74427876 3'AG 74427876 Downstream 84bp 12267 chr16 30387978 30387978 1 + G T UCEC 30387979 + 30387959 30387999 41 TGATCACCGGAGCCTTCAAGGTCTTGGACCCTGAGGGAAAG TGATCACCGGAGCCTTCAATGTCTTGGACCCTGAGGGAAAG < 41bp 0.508222442224945 0.814717517800878 NA NA prediction 0.612990151151866 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387979 chr16:30387978 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12873 0 0 0 0 2 MYLPF chr16:30387941 3'AG 30387941 Downstream 38bp 12268 chr16 30387978 30387978 1 + G T UCEC 30387979 + 30387959 30387999 41 TGATCACCGGAGCCTTCAAGGTCTTGGACCCTGAGGGAAAG TGATCACCGGAGCCTTCAATGTCTTGGACCCTGAGGGAAAG < 41bp 0.508222442224945 0.814717517800878 NA NA prediction 0.612990151151866 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387979 chr16:30387978 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12873 0 0 0 0 2 MYLPF chr16:30388019 5'GT 30388019 Upstream 42bp 12269 chr5 148586587 148586587 1 + G T COAD 148586588 + 148586568 148586608 41 CAGACTGTGCCGGGTGCAAGGAGGAGATCAAGCACGGCCAG CAGACTGTGCCGGGTGCAATGAGGAGATCAAGCACGGCCAG < 41bp 0.520158356992313 0.826633861276513 NA NA prediction 0.612951008568399 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148586588 chr5:148586587 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_12874 0 0 0 0 1 ABLIM3 chr5:148586571 3'AG 148586571 Downstream 17bp 12270 chr1 16378694 16378694 1 + G T LUAD 16378695 + 16378675 16378715 41 CTGACTCTGCCCTTGCAGGGGCTGCAGCCTTCTCAGGGGCT CTGACTCTGCCCTTGCAGGTGCTGCAGCCTTCTCAGGGGCT < 41bp 0.514856319271851 0.82132953482361 NA NA prediction 0.612946431103518 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16378695 chr1:16378694 synonymous SNV . 0 20 hm7G_associated_SNPs_12875 0 0 0 0 1 CLCNKB chr1:16378693 3'AG 16378693 Downstream 2bp 12271 chr12 6970680 6970680 1 + G T LUAD 6970681 + 6970661 6970701 41 CACTGCCAGAACTGGTTCGGGCCCAGGTGCCCTTCAGCTCT CACTGCCAGAACTGGTTCGTGCCCAGGTGCCCTTCAGCTCT < 41bp 0.486344138839477 0.806454662156037 NA NA prediction 0.612909324312073 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6970681 chr12:6970680 synonymous SNV . 0 20 hm7G_associated_SNPs_12876 0 0 1 0 1 USP5 chr12:6970607 3'AG 6970607 Downstream 74bp 12272 chr19 54515287 54515287 1 + G T HNSC 54515288 + 54515268 54515308 41 TCAGCCCGGAGCCTCCCCCGGCCCCACGCCTCACCTACGAG TCAGCCCGGAGCCTCCCCCTGCCCCACGCCTCACCTACGAG < 41bp 0.500880947142101 0.80733148701771 NA NA prediction 0.612901079751217 Functional Gain - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54515288 chr19:54515287 synonymous SNV . 0 20 hm7G_associated_SNPs_12877 0 0 0 0 1 CACNG6 chr19:54515205 3'AG 54515205 Downstream 83bp 12273 chr1 111781534 111781534 1 + G T UCEC 111781535 + 111781515 111781555 41 ACCCATCACAGAGTCTTCAGGCTTCCTGGCCTATTATGAGG ACCCATCACAGAGTCTTCATGCTTCCTGGCCTATTATGAGG < 41bp 0.507540325949252 0.813987314894863 NA NA prediction 0.612893977891222 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781535 chr1:111781534 nonsynonymous SNV 0.854 3 20 hm7G_associated_SNPs_12878 0 0 0 0 1 CHI3L2 chr1:111781554 5'GT 111781554 Upstream 21bp 12274 chr10 51749119 51749119 1 + G T LUSC 51749120 + 51749100 51749140 41 TCAAGCACAATATTCCAGAGGAACTCTCAAACAGAAGGTGA TCAAGCACAATATTCCAGATGAACTCTCAAACAGAAGGTGA < 41bp 0.506028040624935 0.812461081475796 NA NA prediction 0.612866081701723 Functional Gain - AGAP6 ENSG00000204149 CDS Human protein_coding chr10:51749120 chr10:51749119 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_12880 0 0 1 0 2 AGAP6 chr10:51749068 3'AG 51749068 Downstream 52bp 12275 chr10 51749119 51749119 1 + G T LUSC 51749120 + 51749100 51749140 41 TCAAGCACAATATTCCAGAGGAACTCTCAAACAGAAGGTGA TCAAGCACAATATTCCAGATGAACTCTCAAACAGAAGGTGA < 41bp 0.506028040624935 0.812461081475796 NA NA prediction 0.612866081701723 Functional Gain - AGAP6 ENSG00000204149 CDS Human protein_coding chr10:51749120 chr10:51749119 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_12880 0 0 1 0 2 AGAP6 chr10:51749136 5'GT 51749136 Upstream 18bp 12276 chr19 42827826 42827826 1 + G T LUAD 42827827 + 42827807 42827847 41 GGAGTCCCTGGACCCGGAGGGAGCCAATCCGCTGACAAGGC GGAGTCCCTGGACCCGGAGTGAGCCAATCCGCTGACAAGGC < 41bp 0.494341987345856 0.806419207802319 NA NA prediction 0.612838415604638 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42827827 chr19:42827826 nonsynonymous SNV 0.480 1 20 hm7G_associated_SNPs_12881 0 0 1 0 1 TMEM145 chr19:42827735 3'AG 42827735 Downstream 92bp 12277 chr1 161198087 161198087 1 + G T UCEC 161198088 + 161198068 161198108 41 GCCATCTTGACACTGGCTGGGAAGTACTCGGGTATGGGGCG GCCATCTTGACACTGGCTGTGAAGTACTCGGGTATGGGGCG < 41bp 0.495590606576258 0.806412007918656 NA NA prediction 0.612824015837312 Functional Gain - TOMM40L ENSG00000158882 CDS Human protein_coding chr1:161198088 chr1:161198087 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12882 0 0 1 0 1 TOMM40L chr1:161198098 5'GT 161198098 Upstream 12bp 12278 chr2 42281226 42281226 1 + G T rs148462037 42281227 + 42281207 42281247 41 ACCTGGCCCACTCCCCACTGGGCTCCGTCACTCTGCTGGAC ACCTGGCCCACTCCCCACTTGGCTCCGTCACTCTGCTGGAC < 41bp 0.479582940677812 0.806405779480233 NA NA prediction 0.612811558960466 Functional Gain - PKDCC ENSG00000162878 CDS Human protein_coding chr2:42281227 chr2:42281226 synonymous SNV . 0 20 hm7G_associated_SNPs_12883 0 0 1 0 1 PKDCC chr2:42281176 3'AG 42281176 Downstream 51bp 12279 chr8 22458819 22458819 1 + G T UCEC 22458820 + 22458800 22458840 41 CCCTTGGAGCAGGGCAACAGGAGTCCATGGAGGCAGACACA CCCTTGGAGCAGGGCAACATGAGTCCATGGAGGCAGACACA < 41bp 0.506192251402125 0.812590875652758 NA NA prediction 0.612797248501265 Functional Gain - C8orf58 ENSG00000241852;ENSG00000248235 CDS Human other chr8:22458820 chr8:22458819 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_12884 0 0 0 0 1 C8orf58 chr8:22458870 5'GT 22458870 Upstream 52bp 12280 chr18 44030707 44030707 1 + G T LUAD 44030708 + 44030688 44030728 41 AGGTTGGGTAATGTGACTCGGGGAGCTGTACAGAACACCAT AGGTTGGGTAATGTGACTCTGGGAGCTGTACAGAACACCAT < 41bp 0.519013755430749 0.825381829205447 NA NA prediction 0.612736147549397 Functional Gain - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44030708 chr18:44030707 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_12885 0 0 0 0 2 RNF165 chr18:44030667 3'AG 44030667 Downstream 41bp 12281 chr18 44030707 44030707 1 + G T LUAD 44030708 + 44030688 44030728 41 AGGTTGGGTAATGTGACTCGGGGAGCTGTACAGAACACCAT AGGTTGGGTAATGTGACTCTGGGAGCTGTACAGAACACCAT < 41bp 0.519013755430749 0.825381829205447 NA NA prediction 0.612736147549397 Functional Gain - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44030708 chr18:44030707 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_12885 0 0 0 0 2 RNF165 chr18:44030762 5'GT 44030762 Upstream 56bp 12282 chr16 1551498 1551498 1 + G T LUAD 1551499 + 1551479 1551519 41 GTGACGGCGCCTCGGAGGCGGGGTGAGGGTCTCTGCCCCCC GTGACGGCGCCTCGGAGGCTGGGTGAGGGTCTCTGCCCCCC < 41bp 0.506492754134187 0.812856458098258 NA NA prediction 0.612727407928142 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551499 chr16:1551498 synonymous SNV . 0 20 hm7G_associated_SNPs_12886 0 0 0 0 2 TELO2 chr16:1551421 3'AG 1551421 Downstream 78bp 12283 chr16 1551498 1551498 1 + G T LUAD 1551499 + 1551479 1551519 41 GTGACGGCGCCTCGGAGGCGGGGTGAGGGTCTCTGCCCCCC GTGACGGCGCCTCGGAGGCTGGGTGAGGGTCTCTGCCCCCC < 41bp 0.506492754134187 0.812856458098258 NA NA prediction 0.612727407928142 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1551499 chr16:1551498 synonymous SNV . 0 20 hm7G_associated_SNPs_12886 0 0 0 0 2 TELO2 chr16:1551500 5'GT 1551500 Upstream 3bp 12284 chr11 45949594 45949594 1 + G T SKCM 45949595 + 45949575 45949615 41 TGGAGCTGTTGGCCTTGCTGGATGCGGGCACTCTCTACACC TGGAGCTGTTGGCCTTGCTTGATGCGGGCACTCTCTACACC < 41bp 0.489827286883605 0.806359287164779 NA NA prediction 0.612718574329558 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45949595 chr11:45949594 synonymous SNV . 0 20 hm7G_associated_SNPs_12887 0 0 0 0 1 LARGE2 chr11:45949620 5'GT 45949620 Upstream 27bp 12285 chrX 100507654 100507654 1 + G T UCEC 100507655 + 100507635 100507675 41 CCTGCTTCTTGACAGGCAGGGCCAGCAAAGGCAATAAGCTG CCTGCTTCTTGACAGGCAGTGCCAGCAAAGGCAATAAGCTG < 41bp 0.490790132544867 0.806341058200876 NA NA prediction 0.612682116401753 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100507655 chrX:100507654 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_12889 0 0 0 0 2 DRP2 chrX:100507594 3'AG 100507594 Downstream 61bp 12286 chrX 100507654 100507654 1 + G T UCEC 100507655 + 100507635 100507675 41 CCTGCTTCTTGACAGGCAGGGCCAGCAAAGGCAATAAGCTG CCTGCTTCTTGACAGGCAGTGCCAGCAAAGGCAATAAGCTG < 41bp 0.490790132544867 0.806341058200876 NA NA prediction 0.612682116401753 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100507655 chrX:100507654 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_12889 0 0 0 0 2 DRP2 chrX:100507705 5'GT 100507705 Upstream 52bp 12287 chr5 137721848 137721848 1 + G T UCEC 137721849 + 137721829 137721869 41 AGAAATTAAAAGGAGACAGGGGTGAAGTAGACAGTAATGGG AGAAATTAAAAGGAGACAGTGGTGAAGTAGACAGTAATGGG < 41bp 0.508709321886933 0.815012846705468 NA NA prediction 0.612607049637071 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137721849 chr5:137721848 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12891 0 0 1 0 1 KDM3B chr5:137721879 5'GT 137721879 Upstream 32bp 12288 chr11 123471196 123471196 1 + G T LUAD 123471197 + 123471177 123471217 41 ACTTCTTCACTTCGTTTGGGGCCCGGGATAGGACATATATG ACTTCTTCACTTCGTTTGGTGCCCGGGATAGGACATATATG < 41bp 0.514495810078971 0.820775051513511 NA NA prediction 0.612558482869081 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123471197 chr11:123471196 synonymous SNV . 0 20 hm7G_associated_SNPs_12893 0 0 0 0 2 GRAMD1B chr11:123471176 3'AG 123471176 Downstream 21bp 12289 chr11 123471196 123471196 1 + G T LUAD 123471197 + 123471177 123471217 41 ACTTCTTCACTTCGTTTGGGGCCCGGGATAGGACATATATG ACTTCTTCACTTCGTTTGGTGCCCGGGATAGGACATATATG < 41bp 0.514495810078971 0.820775051513511 NA NA prediction 0.612558482869081 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123471197 chr11:123471196 synonymous SNV . 0 20 hm7G_associated_SNPs_12893 0 0 0 0 2 GRAMD1B chr11:123471256 5'GT 123471256 Upstream 61bp 12290 chr15 72638616 72638616 1 - C A UCEC 72638615 - 72638595 72638635 41 TGGAGAGGCTTGTATGTGGGGAGAATATGTGGACAACACAA TGGAGAGGCTTGTATGTGGTGAGAATATGTGGACAACACAA < 41bp 0.494551119115996 0.806266130870953 NA NA prediction 0.612532261741905 Functional Gain - HEXA ENSG00000213614 CDS Human protein_coding chr15:72638615 chr15:72638616 stopgain 1.000 1 20 hm7G_associated_SNPs_12894 0 0 1 0 2 HEXA chr15:72638576 5'GT 72638576 Upstream 41bp 12291 chr15 72638616 72638616 1 - C A UCEC 72638615 - 72638595 72638635 41 TGGAGAGGCTTGTATGTGGGGAGAATATGTGGACAACACAA TGGAGAGGCTTGTATGTGGTGAGAATATGTGGACAACACAA < 41bp 0.494551119115996 0.806266130870953 NA NA prediction 0.612532261741905 Functional Gain - HEXA ENSG00000213614 CDS Human protein_coding chr15:72638615 chr15:72638616 stopgain 1.000 1 20 hm7G_associated_SNPs_12894 0 0 1 0 2 HEXA chr15:72638666 3'AG 72638666 Downstream 51bp 12292 chr1 36645286 36645286 1 + G T COAD 36645287 + 36645267 36645307 41 AGCCTGTGAAAGCTGTGGAGGCTCGGTCCCCAGGGCTGCAG AGCCTGTGAAAGCTGTGGATGCTCGGTCCCCAGGGCTGCAG < 41bp 0.513639230013641 0.819904191083888 NA NA prediction 0.612529922140493 Functional Gain - MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645287 chr1:36645286 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_12895 0 0 1 0 2 MAP7D1 chr1:36645267 3'AG 36645267 Downstream 20bp 12293 chr1 36645286 36645286 1 + G T COAD 36645287 + 36645267 36645307 41 AGCCTGTGAAAGCTGTGGAGGCTCGGTCCCCAGGGCTGCAG AGCCTGTGAAAGCTGTGGATGCTCGGTCCCCAGGGCTGCAG < 41bp 0.513639230013641 0.819904191083888 NA NA prediction 0.612529922140493 Functional Gain - MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645287 chr1:36645286 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_12895 0 0 1 0 2 MAP7D1 chr1:36645357 5'GT 36645357 Upstream 72bp 12294 chr11 117030703 117030703 1 + G T PRAD 117030704 + 117030684 117030724 41 AGCCTGATGTACTGTTCGTGGGAGACTCCATGGTGCAGTTA AGCCTGATGTACTGTTCGTTGGAGACTCCATGGTGCAGTTA < 41bp 0.493044659863077 0.806261989290889 NA NA prediction 0.612523978581778 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117030704 chr11:117030703 synonymous SNV . 0 20 hm7G_associated_SNPs_12896 0 0 1 0 2 PAFAH1B2 chr11:117030650 3'AG 117030650 Downstream 54bp 12295 chr11 117030703 117030703 1 + G T PRAD 117030704 + 117030684 117030724 41 AGCCTGATGTACTGTTCGTGGGAGACTCCATGGTGCAGTTA AGCCTGATGTACTGTTCGTTGGAGACTCCATGGTGCAGTTA < 41bp 0.493044659863077 0.806261989290889 NA NA prediction 0.612523978581778 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117030704 chr11:117030703 synonymous SNV . 0 20 hm7G_associated_SNPs_12896 0 0 1 0 2 PAFAH1B2 chr11:117030739 5'GT 117030739 Upstream 37bp 12296 chr5 639257 639257 1 + G T LUSC 639258 + 639238 639278 41 AGAAGACGGCCCTGCAGGCGGCGCTCCTGGAGACGCTCTTG AGAAGACGGCCCTGCAGGCTGCGCTCCTGGAGACGCTCTTG < 41bp 0.492751311823278 0.806213431497816 NA NA prediction 0.612426862995631 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:639258 chr5:639257 synonymous SNV . 0 20 hm7G_associated_SNPs_12898 0 0 0 0 1 CEP72 chr5:639204 3'AG 639204 Downstream 54bp 12297 chr7 128496579 128496579 1 + G T LGG 128496580 + 128496560 128496600 41 TGGCCTTTGCAGGAGACGGGGCTCAAGGTGAACCAGCCAGC TGGCCTTTGCAGGAGACGGTGCTCAAGGTGAACCAGCCAGC < 41bp 0.507883918406629 0.814092037735691 NA NA prediction 0.612416238658124 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128496580 chr7:128496579 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_12899 0 0 1 0 1 FLNC chr7:128496572 3'AG 128496572 Downstream 8bp 12298 chr5 147486684 147486684 1 + G T LUSC 147486685 + 147486665 147486705 41 TCCTGTCCGTGGCCCAGATGGCAAAATGCATGGAAACAAGT TCCTGTCCGTGGCCCAGATTGCAAAATGCATGGAAACAAGT < 41bp 0.519035525735059 0.825219578811942 NA NA prediction 0.612368106153766 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147486685 chr5:147486684 nonsynonymous SNV 0.459 4 20 hm7G_associated_SNPs_12901 0 0 0 0 2 SPINK5 chr5:147486600 3'AG 147486600 Downstream 85bp 12299 chr5 147486684 147486684 1 + G T LUSC 147486685 + 147486665 147486705 41 TCCTGTCCGTGGCCCAGATGGCAAAATGCATGGAAACAAGT TCCTGTCCGTGGCCCAGATTGCAAAATGCATGGAAACAAGT < 41bp 0.519035525735059 0.825219578811942 NA NA prediction 0.612368106153766 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147486685 chr5:147486684 nonsynonymous SNV 0.459 4 20 hm7G_associated_SNPs_12901 0 0 0 0 2 SPINK5 chr5:147486727 5'GT 147486727 Upstream 44bp 12300 chr16 57413650 57413650 1 + G T LUAD 57413651 + 57413631 57413671 41 ACAGAACCAGGCATCATGCGGCAAACGCGCAATCATGTAGG ACAGAACCAGGCATCATGCTGCAAACGCGCAATCATGTAGG < 41bp 0.501918570364132 0.808100319502374 NA NA prediction 0.612363498276484 Functional Gain - CX3CL1 ENSG00000006210 CDS Human protein_coding chr16:57413651 chr16:57413650 nonsynonymous SNV 0.014 3 20 hm7G_associated_SNPs_12902 0 0 0 0 1 CX3CL1 chr16:57413666 5'GT 57413666 Upstream 17bp 12301 chr2 74719178 74719178 1 + G T LUSC 74719179 + 74719159 74719199 41 TACAACAGAGCCAGGAACTGGCAAGTGAGATCCTTTCTCTC TACAACAGAGCCAGGAACTTGCAAGTGAGATCCTTTCTCTC < 41bp 0.514139145561657 0.820287347361232 NA NA prediction 0.612296403599149 Functional Gain - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74719179 chr2:74719178 synonymous SNV . 0 20 hm7G_associated_SNPs_12903 0 0 1 0 2 TTC31 chr2:74719131 3'AG 74719131 Downstream 48bp 12302 chr2 74719178 74719178 1 + G T LUSC 74719179 + 74719159 74719199 41 TACAACAGAGCCAGGAACTGGCAAGTGAGATCCTTTCTCTC TACAACAGAGCCAGGAACTTGCAAGTGAGATCCTTTCTCTC < 41bp 0.514139145561657 0.820287347361232 NA NA prediction 0.612296403599149 Functional Gain - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74719179 chr2:74719178 synonymous SNV . 0 20 hm7G_associated_SNPs_12903 0 0 1 0 2 TTC31 chr2:74719182 5'GT 74719182 Upstream 5bp 12303 chr19 1063638 1063638 1 + G T LUAD 1063639 + 1063619 1063659 41 ACAAACGCAAGCTGGCGACGGCCCTGGCGCTGGTTGGGGAC ACAAACGCAAGCTGGCGACTGCCCTGGCGCTGGTTGGGGAC < 41bp 0.517734692510855 0.823881300160905 NA NA prediction 0.612293215300101 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1063639 chr19:1063638 synonymous SNV . 0 20 hm7G_associated_SNPs_12904 0 0 1 0 2 ABCA7 chr19:1063543 3'AG 1063543 Downstream 96bp 12304 chr19 1063638 1063638 1 + G T LUAD 1063639 + 1063619 1063659 41 ACAAACGCAAGCTGGCGACGGCCCTGGCGCTGGTTGGGGAC ACAAACGCAAGCTGGCGACTGCCCTGGCGCTGGTTGGGGAC < 41bp 0.517734692510855 0.823881300160905 NA NA prediction 0.612293215300101 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1063639 chr19:1063638 synonymous SNV . 0 20 hm7G_associated_SNPs_12904 0 0 1 0 2 ABCA7 chr19:1063677 5'GT 1063677 Upstream 40bp 12305 chr10 82185667 82185667 1 + G T LUSC 82185668 + 82185648 82185688 41 AAGCATGTTGGACCAGCTGGGCGTCCCCCTCTATGCAGTGG AAGCATGTTGGACCAGCTGTGCGTCCCCCTCTATGCAGTGG < 41bp 0.524142926138956 0.830278111601594 NA NA prediction 0.612270370925276 Functional Gain - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82185668 chr10:82185667 nonsynonymous SNV 0.526 4 20 hm7G_associated_SNPs_12906 0 0 1 0 2 FAM213A chr10:82185622 3'AG 82185622 Downstream 46bp 12306 chr10 82185667 82185667 1 + G T LUSC 82185668 + 82185648 82185688 41 AAGCATGTTGGACCAGCTGGGCGTCCCCCTCTATGCAGTGG AAGCATGTTGGACCAGCTGTGCGTCCCCCTCTATGCAGTGG < 41bp 0.524142926138956 0.830278111601594 NA NA prediction 0.612270370925276 Functional Gain - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82185668 chr10:82185667 nonsynonymous SNV 0.526 4 20 hm7G_associated_SNPs_12906 0 0 1 0 2 FAM213A chr10:82185762 5'GT 82185762 Upstream 96bp 12307 chr1 110168957 110168957 1 + G T OV 110168958 + 110168938 110168978 41 CAGGCTCTACAAGGAACAGGGTGAGGGGCAGGGTGACCGGA CAGGCTCTACAAGGAACAGTGTGAGGGGCAGGGTGACCGGA < 41bp 0.508580052736359 0.814710951611573 NA NA prediction 0.61226179775043 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168958 chr1:110168957 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_12907 0 0 1 2 2 AMPD2 chr1:110168941 3'AG 110168941 Downstream 17bp 12308 chr1 110168957 110168957 1 + G T OV 110168958 + 110168938 110168978 41 CAGGCTCTACAAGGAACAGGGTGAGGGGCAGGGTGACCGGA CAGGCTCTACAAGGAACAGTGTGAGGGGCAGGGTGACCGGA < 41bp 0.508580052736359 0.814710951611573 NA NA prediction 0.61226179775043 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168958 chr1:110168957 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_12907 0 0 1 2 2 AMPD2 chr1:110169049 5'GT 110169049 Upstream 93bp 12309 chr16 67578678 67578678 1 + G T UCEC 67578679 + 67578659 67578699 41 GGGAAGCCCGAGTACTGGAGGCAGTATGCGAGTTCAGCAGG GGGAAGCCCGAGTACTGGATGCAGTATGCGAGTTCAGCAGG < 41bp 0.486444663732265 0.806120313579114 NA NA prediction 0.612240627158228 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578679 chr16:67578678 nonsynonymous SNV 0.014 3 20 hm7G_associated_SNPs_12908 0 0 1 0 2 RIPOR1 chr16:67578598 3'AG 67578598 Downstream 81bp 12310 chr16 67578678 67578678 1 + G T UCEC 67578679 + 67578659 67578699 41 GGGAAGCCCGAGTACTGGAGGCAGTATGCGAGTTCAGCAGG GGGAAGCCCGAGTACTGGATGCAGTATGCGAGTTCAGCAGG < 41bp 0.486444663732265 0.806120313579114 NA NA prediction 0.612240627158228 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578679 chr16:67578678 nonsynonymous SNV 0.014 3 20 hm7G_associated_SNPs_12908 0 0 1 0 2 RIPOR1 chr16:67578733 5'GT 67578733 Upstream 56bp 12311 chr4 186318335 186318335 1 + G T STAD 186318336 + 186318316 186318356 41 AAGCATTTGCTGGAGACAGGGGCCTCGGTCAACGCACCCCC AAGCATTTGCTGGAGACAGTGGCCTCGGTCAACGCACCCCC < 41bp 0.497265487221908 0.806119469642734 NA NA prediction 0.612238939285469 Functional Gain - ANKRD37 ENSG00000186352 CDS Human protein_coding chr4:186318336 chr4:186318335 nonsynonymous SNV 0.043 4 20 hm7G_associated_SNPs_12909 0 0 1 0 1 ANKRD37 chr4:186318304 3'AG 186318304 Downstream 32bp 12312 chr3 183975455 183975455 1 + G T LUSC 183975456 + 183975436 183975476 41 TGATGTGGTGCTCGAGAAGGGCACGCTGGATGCCCTGCTGG TGATGTGGTGCTCGAGAAGTGCACGCTGGATGCCCTGCTGG < 41bp 0.480839362209756 0.80610678639519 NA NA prediction 0.612213572790379 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183975456 chr3:183975455 nonsynonymous SNV 0.922 3 20 hm7G_associated_SNPs_12910 0 0 1 0 1 ECE2 chr3:183975544 5'GT 183975544 Upstream 90bp 12313 chr11 130343024 130343024 1 + G T LUSC 130343025 + 130343005 130343045 41 CGGTTACAAAGGGCTGATCGGGGATGACAACTACCTGGCTC CGGTTACAAAGGGCTGATCTGGGATGACAACTACCTGGCTC < 41bp 0.501538216294151 0.807574450930712 NA NA prediction 0.612072469273122 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130343025 chr11:130343024 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_12912 0 0 0 0 1 ADAMTS15 chr11:130342942 3'AG 130342942 Downstream 83bp 12314 chr12 57970117 57970117 1 + G T LAML 57970118 + 57970098 57970138 41 GGCAGCTGGCCCGGCTCCGGGACGAGATCAACGAGAAGCAG GGCAGCTGGCCCGGCTCCGTGACGAGATCAACGAGAAGCAG < 41bp 0.522763894527095 0.82878562579121 NA NA prediction 0.612043462528231 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970118 chr12:57970117 synonymous SNV . 0 20 hm7G_associated_SNPs_12914 0 0 1 0 1 KIF5A chr12:57970052 3'AG 57970052 Downstream 66bp 12315 chr22 35734776 35734776 1 + G T ACC 35734777 + 35734757 35734797 41 CGCCCGGCAGCAGAGCACTGGCGCGGTAAGCAGAGGGGCCA CGCCCGGCAGCAGAGCACTTGCGCGGTAAGCAGAGGGGCCA < 41bp 0.510086566567535 0.816093229355375 NA NA prediction 0.612013325575681 Functional Gain - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35734777 chr22:35734776 nonsynonymous SNV 0.950 3 20 hm7G_associated_SNPs_12915 0 0 1 0 1 TOM1 chr22:35734781 5'GT 35734781 Upstream 6bp 12316 chr12 1741919 1741919 1 + G T LUAD 1741920 + 1741900 1741940 41 GGGCTCTCCCCTGGCCAGAGGAAGCTGTGCCAATTGTACCA GGGCTCTCCCCTGGCCAGATGAAGCTGTGCCAATTGTACCA < 41bp 0.483002733211944 0.805962858748895 NA NA prediction 0.61192571749779 Functional Gain - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1741920 chr12:1741919 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_12918 0 0 0 0 1 WNT5B chr12:1741824 3'AG 1741824 Downstream 96bp 12317 chr17 36628119 36628119 1 + G T COAD 36628120 + 36628100 36628140 41 GCAGTCCTTGGATAGCTGGGGCACCTCTGAAGATGCTGACG GCAGTCCTTGGATAGCTGGTGCACCTCTGAAGATGCTGACG < 41bp 0.484704559549131 0.805954319056022 NA NA prediction 0.611908638112045 Functional Gain - ARHGAP23 ENSG00000225485 CDS Human other chr17:36628120 chr17:36628119 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_12919 0 0 0 0 1 ARHGAP23 chr17:36628104 3'AG 36628104 Downstream 16bp 12318 chr19 41509945 41509945 1 + G T HNSC 41509946 + 41509926 41509966 41 CGTCTTCACGGTACACCTGGGACCGAGGCCCGTGGTCATGC CGTCTTCACGGTACACCTGTGACCGAGGCCCGTGGTCATGC < 41bp 0.511806512834795 0.817756034215926 NA NA prediction 0.611899042762262 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41509946 chr19:41509945 stopgain 0.818 1 20 hm7G_associated_SNPs_12920 0 0 0 0 1 CYP2B6 chr19:41509906 3'AG 41509906 Downstream 40bp 12319 chr17 40720862 40720862 1 + G T UCEC 40720863 + 40720843 40720883 41 CTCTGAGCGTAGATGATGAGGACAGTGATTACCACCAGGAG CTCTGAGCGTAGATGATGATGACAGTGATTACCACCAGGAG < 41bp 0.490562411229866 0.805932220193122 NA NA prediction 0.611864440386245 Functional Gain - MLX ENSG00000108788 CDS Human protein_coding chr17:40720863 chr17:40720862 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_12922 0 0 1 0 2 MLX chr17:40720855 3'AG 40720855 Downstream 8bp 12320 chr17 40720862 40720862 1 + G T UCEC 40720863 + 40720843 40720883 41 CTCTGAGCGTAGATGATGAGGACAGTGATTACCACCAGGAG CTCTGAGCGTAGATGATGATGACAGTGATTACCACCAGGAG < 41bp 0.490562411229866 0.805932220193122 NA NA prediction 0.611864440386245 Functional Gain - MLX ENSG00000108788 CDS Human protein_coding chr17:40720863 chr17:40720862 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_12922 0 0 1 0 2 MLX chr17:40720961 5'GT 40720961 Upstream 100bp 12321 chr17 33510451 33510451 1 + G T UCEC 33510452 + 33510432 33510472 41 CCTGCCTCCCACAGGTACAGGAAAGGTTCTTGGCTGACGGG CCTGCCTCCCACAGGTACATGAAAGGTTCTTGGCTGACGGG < 41bp 0.495757132188224 0.805893336769828 NA NA prediction 0.611786673539657 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33510452 chr17:33510451 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_12923 0 0 0 0 1 UNC45B chr17:33510446 3'AG 33510446 Downstream 6bp 12322 chr1 12089916 12089916 1 + G T LUAD 12089917 + 12089897 12089937 41 GGACACCGCGAGACCAGCAGGGCCCTGGGACCCTGGCGCAG GGACACCGCGAGACCAGCATGGCCCTGGGACCCTGGCGCAG < 41bp 0.517105925847908 0.822987946385845 NA NA prediction 0.611764041075874 Functional Gain - MIIP ENSG00000116691 CDS Human protein_coding chr1:12089917 chr1:12089916 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_12924 0 0 1 0 2 MIIP chr1:12089822 3'AG 12089822 Downstream 95bp 12323 chr1 12089916 12089916 1 + G T LUAD 12089917 + 12089897 12089937 41 GGACACCGCGAGACCAGCAGGGCCCTGGGACCCTGGCGCAG GGACACCGCGAGACCAGCATGGCCCTGGGACCCTGGCGCAG < 41bp 0.517105925847908 0.822987946385845 NA NA prediction 0.611764041075874 Functional Gain - MIIP ENSG00000116691 CDS Human protein_coding chr1:12089917 chr1:12089916 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_12924 0 0 1 0 2 MIIP chr1:12089951 5'GT 12089951 Upstream 36bp 12324 chr8 23104445 23104445 1 + G T UCEC 23104446 + 23104426 23104466 41 GTCTGCGGGACTTGCAGGAGGCCTTTCAGCGCAAGGGGAGC GTCTGCGGGACTTGCAGGATGCCTTTCAGCGCAAGGGGAGC < 41bp 0.51511784473993 0.820984299851545 NA NA prediction 0.61173291022323 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23104446 chr8:23104445 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12925 0 0 1 0 1 CHMP7 chr8:23104507 5'GT 23104507 Upstream 63bp 12325 chr7 75614270 75614270 1 + G T UCEC 75614271 + 75614251 75614291 41 TGGCCTCCTCCTCCGGCGAGGGCAAGGTGCGCCCCCTCAGC TGGCCTCCTCCTCCGGCGATGGCAAGGTGCGCCCCCTCAGC < 41bp 0.499069229806691 0.805861211553223 NA NA prediction 0.611722423106447 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75614271 chr7:75614270 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_12926 0 0 1 0 1 POR chr7:75614276 5'GT 75614276 Upstream 7bp 12326 chr19 1220707 1220707 1 + G T LUAD 1220708 + 1220688 1220728 41 GTGGACATCTGGTCGGCTGGGGTCACCCTGTAAGTGCCCCG GTGGACATCTGGTCGGCTGTGGTCACCCTGTAAGTGCCCCG < 41bp 0.528474154768068 0.834332690710194 NA NA prediction 0.611717071884253 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220708 chr19:1220707 nonsynonymous SNV 0.965 5 20 hm7G_associated_SNPs_12927 0 0 1 0 1 STK11 chr19:1220716 5'GT 1220716 Upstream 10bp 12327 chr17 4643866 4643866 1 + G T THCA 4643867 + 4643847 4643887 41 GAGTTTGTGTCTGGATACCGGGATGAGTTCCTTGATTTCAC GAGTTTGTGTCTGGATACCTGGATGAGTTCCTTGATTTCAC < 41bp 0.508407914944799 0.814231731595786 NA NA prediction 0.611647633301972 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4643867 chr17:4643866 nonsynonymous SNV 0.968 1 20 hm7G_associated_SNPs_12931 0 0 0 0 1 ZMYND15 chr17:4643814 3'AG 4643814 Downstream 53bp 12328 chrX 69500075 69500075 1 + G T LGG 69500076 + 69500056 69500096 41 GAATGGACAAAGAGCTGCTGGGGATCCTGGTGTCCTACAAA GAATGGACAAAGAGCTGCTTGGGATCCTGGTGTCCTACAAA < 41bp 0.526837005577961 0.832660368633733 NA NA prediction 0.611646726111544 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500076 chrX:69500075 synonymous SNV . 0 20 hm7G_associated_SNPs_12932 0 0 0 0 2 ARR3 chrX:69500045 3'AG 69500045 Downstream 31bp 12329 chrX 69500075 69500075 1 + G T LGG 69500076 + 69500056 69500096 41 GAATGGACAAAGAGCTGCTGGGGATCCTGGTGTCCTACAAA GAATGGACAAAGAGCTGCTTGGGATCCTGGTGTCCTACAAA < 41bp 0.526837005577961 0.832660368633733 NA NA prediction 0.611646726111544 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500076 chrX:69500075 synonymous SNV . 0 20 hm7G_associated_SNPs_12932 0 0 0 0 2 ARR3 chrX:69500128 5'GT 69500128 Upstream 54bp 12330 chr1 180135629 180135629 1 + G T LUSC 180135630 + 180135610 180135650 41 TTTTTTGTCCTTTCAGCCTGGAGGCCGGCCCTGTATCTCGC TTTTTTGTCCTTTCAGCCTTGAGGCCGGCCCTGTATCTCGC < 41bp 0.518192906022063 0.824009265187709 NA NA prediction 0.611632718331291 Functional Gain - QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180135630 chr1:180135629 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_12933 0 0 1 0 1 QSOX1 chr1:180135626 3'AG 180135626 Downstream 4bp 12331 chr19 19449686 19449686 1 + G T rs2074090 19449687 + 19449667 19449707 41 TTGAGAAGGACCTGGTGTCGGCCTGTGACCTCCTGGGTGTA TTGAGAAGGACCTGGTGTCTGCCTGTGACCTCCTGGGTGTA < 41bp 0.526238441789355 0.832053932730371 NA NA prediction 0.611630981882032 Functional Gain - MAU2 ENSG00000129933 CDS Human protein_coding chr19:19449687 chr19:19449686 synonymous SNV . 0 20 hm7G_associated_SNPs_12934 0 0 1 0 2 MAU2 chr19:19449654 3'AG 19449654 Downstream 33bp 12332 chr19 19449686 19449686 1 + G T rs2074090 19449687 + 19449667 19449707 41 TTGAGAAGGACCTGGTGTCGGCCTGTGACCTCCTGGGTGTA TTGAGAAGGACCTGGTGTCTGCCTGTGACCTCCTGGGTGTA < 41bp 0.526238441789355 0.832053932730371 NA NA prediction 0.611630981882032 Functional Gain - MAU2 ENSG00000129933 CDS Human protein_coding chr19:19449687 chr19:19449686 synonymous SNV . 0 20 hm7G_associated_SNPs_12934 0 0 1 0 2 MAU2 chr19:19449748 5'GT 19449748 Upstream 63bp 12333 chr1 183876208 183876208 1 + G T UCEC 183876209 + 183876189 183876229 41 ACCACCTCGCCCAAGCCTCGGAAGAGCATGGTGAAGAGACT ACCACCTCGCCCAAGCCTCTGAAGAGCATGGTGAAGAGACT < 41bp 0.490134505116104 0.805785764979522 NA NA prediction 0.611571529959043 Functional Gain - RGL1 ENSG00000143344 CDS Human protein_coding chr1:183876209 chr1:183876208 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_12935 0 0 0 0 2 RGL1 chr1:183876146 3'AG 183876146 Downstream 63bp 12334 chr1 183876208 183876208 1 + G T UCEC 183876209 + 183876189 183876229 41 ACCACCTCGCCCAAGCCTCGGAAGAGCATGGTGAAGAGACT ACCACCTCGCCCAAGCCTCTGAAGAGCATGGTGAAGAGACT < 41bp 0.490134505116104 0.805785764979522 NA NA prediction 0.611571529959043 Functional Gain - RGL1 ENSG00000143344 CDS Human protein_coding chr1:183876209 chr1:183876208 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_12935 0 0 0 0 2 RGL1 chr1:183876235 5'GT 183876235 Upstream 28bp 12335 chr3 126734114 126734114 1 + G T LGG 126734115 + 126734095 126734135 41 GGGAAGCCACCTGAACGCAGGCAGTGATGTGGCTGTGTCGG GGGAAGCCACCTGAACGCATGCAGTGATGTGGCTGTGTCGG < 41bp 0.515532940189651 0.821309232988718 NA NA prediction 0.611552585598135 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126734115 chr3:126734114 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_12936 0 0 0 0 2 PLXNA1 chr3:126734027 3'AG 126734027 Downstream 88bp 12336 chr3 126734114 126734114 1 + G T LGG 126734115 + 126734095 126734135 41 GGGAAGCCACCTGAACGCAGGCAGTGATGTGGCTGTGTCGG GGGAAGCCACCTGAACGCATGCAGTGATGTGGCTGTGTCGG < 41bp 0.515532940189651 0.821309232988718 NA NA prediction 0.611552585598135 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126734115 chr3:126734114 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_12936 0 0 0 0 2 PLXNA1 chr3:126734163 5'GT 126734163 Upstream 50bp 12337 chr17 56276546 56276546 1 + G T LUSC 56276547 + 56276527 56276567 41 ATGAGGCTCGGAAGATCATGGGGGCCATGGTCCAGGTAAGG ATGAGGCTCGGAAGATCATTGGGGCCATGGTCCAGGTAAGG < 41bp 0.484875263483412 0.805773579088485 NA NA prediction 0.61154715817697 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56276547 chr17:56276546 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_12937 0 0 0 0 1 EPX chr17:56276561 5'GT 56276561 Upstream 16bp 12338 chr6 160555075 160555075 1 + G T LUSC 160555076 + 160555056 160555096 41 GGGGCTGGTGGCGCTTACCGGGCTGGCCTACGCCCTGCCTC GGGGCTGGTGGCGCTTACCTGGCTGGCCTACGCCCTGCCTC < 41bp 0.483417904531806 0.805773333782807 NA NA prediction 0.611546667565613 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160555076 chr6:160555075 nonsynonymous SNV 0.340 3 20 hm7G_associated_SNPs_12938 0 0 0 0 2 SLC22A1 chr6:160554989 3'AG 160554989 Downstream 87bp 12339 chr6 160555075 160555075 1 + G T LUSC 160555076 + 160555056 160555096 41 GGGGCTGGTGGCGCTTACCGGGCTGGCCTACGCCCTGCCTC GGGGCTGGTGGCGCTTACCTGGCTGGCCTACGCCCTGCCTC < 41bp 0.483417904531806 0.805773333782807 NA NA prediction 0.611546667565613 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160555076 chr6:160555075 nonsynonymous SNV 0.340 3 20 hm7G_associated_SNPs_12938 0 0 0 0 2 SLC22A1 chr6:160555157 5'GT 160555157 Upstream 83bp 12340 chr17 32963144 32963144 1 + G T LUAD 32963145 + 32963125 32963165 41 AGCCTGGCCCTCTCCCTGCGGCCCAGCCCTGGGAGCAGCCA AGCCTGGCCCTCTCCCTGCTGCCCAGCCCTGGGAGCAGCCA < 41bp 0.533533635442587 0.839303204948737 NA NA prediction 0.611539139012299 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32963145 chr17:32963144 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_12939 0 0 0 0 1 TMEM132E chr17:32963217 5'GT 32963217 Upstream 74bp 12341 chr20 57770990 57770990 1 + G T UCEC 57770991 + 57770971 57771011 41 TGAGCCAGAATGGAAGAAAGGCCTGCCTTGGAGGGCAAAGA TGAGCCAGAATGGAAGAAATGCCTGCCTTGGAGGGCAAAGA < 41bp 0.495694025241769 0.805736098457038 NA NA prediction 0.611472196914076 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57770991 chr20:57770990 nonsynonymous SNV 0.361 3 20 hm7G_associated_SNPs_12940 0 0 0 0 2 ZNF831 chr20:57770924 3'AG 57770924 Downstream 67bp 12342 chr20 57770990 57770990 1 + G T UCEC 57770991 + 57770971 57771011 41 TGAGCCAGAATGGAAGAAAGGCCTGCCTTGGAGGGCAAAGA TGAGCCAGAATGGAAGAAATGCCTGCCTTGGAGGGCAAAGA < 41bp 0.495694025241769 0.805736098457038 NA NA prediction 0.611472196914076 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57770991 chr20:57770990 nonsynonymous SNV 0.361 3 20 hm7G_associated_SNPs_12940 0 0 0 0 2 ZNF831 chr20:57771060 5'GT 57771060 Upstream 71bp 12343 chr5 176517995 176517995 1 + G T LUAD 176517996 + 176517976 176518016 41 ACTGCATGCAGTACCTGCGGGGAACACCGTCAAGTTCCGCT ACTGCATGCAGTACCTGCGTGGAACACCGTCAAGTTCCGCT < 41bp 0.530216916554756 0.835944684071446 NA NA prediction 0.61145553503338 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176517996 chr5:176517995 nonsynonymous SNV 0.624 5 20 hm7G_associated_SNPs_12941 0 0 1 0 1 FGFR4 chr5:176517939 3'AG 176517939 Downstream 57bp 12344 chr17 56276975 56276975 1 + G T LUAD 56276976 + 56276956 56276996 41 AACCCTGGGGCACTACAGGGGGTACTGCTCCAATGTGGACC AACCCTGGGGCACTACAGGTGGTACTGCTCCAATGTGGACC < 41bp 0.530125262513018 0.835848515919883 NA NA prediction 0.611446506813731 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56276976 chr17:56276975 nonsynonymous SNV 0.612 4 20 hm7G_associated_SNPs_12942 0 0 0 0 1 EPX chr17:56276900 3'AG 56276900 Downstream 76bp 12345 chr10 72511878 72511878 1 + G T STAD 72511879 + 72511859 72511899 41 TTCACCAAATACGGCTGCCGGCGCAGACGAGACCACCACAT TTCACCAAATACGGCTGCCTGCGCAGACGAGACCACCACAT < 41bp 0.52408435990835 0.829801032456113 NA NA prediction 0.611433345095526 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72511879 chr10:72511878 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_12943 0 0 0 0 1 ADAMTS14 chr10:72511851 3'AG 72511851 Downstream 28bp 12346 chr11 44255775 44255775 1 + G T BLCA 44255776 + 44255756 44255796 41 TCCTGGTGGCCAACGTCACGGGAAAAGCAGTTATCAAGGTA TCCTGGTGGCCAACGTCACTGGAAAAGCAGTTATCAAGGTA < 41bp 0.490125347074935 0.805708749121392 NA NA prediction 0.611417498242785 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44255776 chr11:44255775 synonymous SNV . 0 20 hm7G_associated_SNPs_12944 0 0 0 0 1 EXT2 chr11:44255793 5'GT 44255793 Upstream 19bp 12347 chr20 39985681 39985681 1 + G T LUAD 39985682 + 39985662 39985702 41 CCCTTTGTCTGGCCTCAGCGGCGCCTGAACCTGCAAGAAGG CCCTTTGTCTGGCCTCAGCTGCGCCTGAACCTGCAAGAAGG < 41bp 0.516413809393442 0.822121909183668 NA NA prediction 0.611416199580454 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39985682 chr20:39985681 nonsynonymous SNV 0.152 0 20 hm7G_associated_SNPs_12945 0 0 1 0 1 LPIN3 chr20:39985680 3'AG 39985680 Downstream 2bp 12348 chr16 89702443 89702443 1 + G T LUSC 89702444 + 89702424 89702464 41 GAGGGCCGGCTTTGTGGGAGGCCAGGTACCGCCTGCCCTGC GAGGGCCGGCTTTGTGGGATGCCAGGTACCGCCTGCCCTGC < 41bp 0.51886099097611 0.824568565647615 NA NA prediction 0.61141514934301 Functional Gain - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89702444 chr16:89702443 nonsynonymous SNV 0.787 3 20 hm7G_associated_SNPs_12946 0 0 0 0 1 DPEP1 chr16:89702448 5'GT 89702448 Upstream 6bp 12349 chr17 55193506 55193506 1 + G T LUAD 55193507 + 55193487 55193527 41 CCGCCCCTGGTGCGGACGGGGCCTGGTGGCGAGCCCAAGTG CCGCCCCTGGTGCGGACGGTGCCTGGTGGCGAGCCCAAGTG < 41bp 0.530690535690443 0.836397342317826 NA NA prediction 0.611413613254766 Functional Gain - AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55193507 chr17:55193506 synonymous SNV . 0 20 hm7G_associated_SNPs_12947 0 0 1 0 1 AKAP1 chr17:55193472 3'AG 55193472 Downstream 35bp 12350 chr4 654369 654369 1 + G T BLCA 654370 + 654350 654390 41 TCCAGATGTACTACGAGCTGGGCGTGGTCCGAAAGTTCCAG TCCAGATGTACTACGAGCTTGGCGTGGTCCGAAAGTTCCAG < 41bp 0.481151214257749 0.805701749436335 NA NA prediction 0.61140349887267 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:654370 chr4:654369 synonymous SNV . 0 20 hm7G_associated_SNPs_12948 0 0 0 0 1 PDE6B chr4:654402 5'GT 654402 Upstream 34bp 12351 chr4 79763671 79763671 1 + G T LUSC 79763672 + 79763652 79763692 41 AAGACTCCAATAATTCACCGGGATCTGAAGGTAAGAACTTT AAGACTCCAATAATTCACCTGGATCTGAAGGTAAGAACTTT < 41bp 0.504347427632266 0.810028275127475 NA NA prediction 0.611361694990419 Functional Gain - BMP2K ENSG00000138756 CDS Human protein_coding chr4:79763672 chr4:79763671 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_12949 0 0 1 0 1 BMP2K chr4:79763681 5'GT 79763681 Upstream 11bp 12352 chr22 21140420 21140420 1 + G T LUAD 21140421 + 21140401 21140441 41 GCAGGCATCTCAGACCAAAGGATCGCCATCGACCTGGTAAC GCAGGCATCTCAGACCAAATGATCGCCATCGACCTGGTAAC < 41bp 0.496776621065982 0.805616370604033 NA NA prediction 0.611232741208067 Functional Gain - SERPIND1 ENSG00000099937 CDS Human protein_coding chr22:21140421 chr22:21140420 nonsynonymous SNV 0.905 2 20 hm7G_associated_SNPs_12951 0 0 1 0 1 SERPIND1 chr22:21140436 5'GT 21140436 Upstream 17bp 12353 chr19 36257748 36257748 1 + G T UCEC 36257749 + 36257729 36257769 41 AAGCACCCCTTCGGCCAGAGGATGACATTCTGTACCAGTGG AAGCACCCCTTCGGCCAGATGATGACATTCTGTACCAGTGG < 41bp 0.519505877930704 0.8251197404614 NA NA prediction 0.611227725061393 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36257749 chr19:36257748 nonsynonymous SNV 0.978 3 20 hm7G_associated_SNPs_12953 0 0 1 0 1 PROSER3 chr19:36257669 3'AG 36257669 Downstream 80bp 12354 chr13 21715044 21715044 1 + G T THCA 21715045 + 21715025 21715065 41 ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGG ACATGCCCACTGTTGCTACTGGTCTTCACCACCAATAACGG < 41bp 0.507702040378616 0.813303932265248 NA NA prediction 0.611203783773264 Functional Gain - SAP18 ENSG00000150459 CDS Human protein_coding chr13:21715045 chr13:21715044 nonsynonymous SNV 0.547 4 20 hm7G_associated_SNPs_12954 0 0 1 0 2 SAP18 chr13:21715025 3'AG 21715025 Downstream 20bp 12355 chr13 21715044 21715044 1 + G T THCA 21715045 + 21715025 21715065 41 ACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGG ACATGCCCACTGTTGCTACTGGTCTTCACCACCAATAACGG < 41bp 0.507702040378616 0.813303932265248 NA NA prediction 0.611203783773264 Functional Gain - SAP18 ENSG00000150459 CDS Human protein_coding chr13:21715045 chr13:21715044 nonsynonymous SNV 0.547 4 20 hm7G_associated_SNPs_12954 0 0 1 0 2 SAP18 chr13:21715134 5'GT 21715134 Upstream 91bp 12356 chr10 119014861 119014861 1 + G T LUAD 119014862 + 119014842 119014882 41 TCCTGGTGCTGGCCGCCCTGGTACTCTTGGATGGAGGTGAG TCCTGGTGCTGGCCGCCCTTGTACTCTTGGATGGAGGTGAG < 41bp 0.495826478049013 0.805584796644601 NA NA prediction 0.611169593289201 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119014862 chr10:119014861 synonymous SNV . 0 20 hm7G_associated_SNPs_12956 0 0 0 0 2 SLC18A2 chr10:119014788 3'AG 119014788 Downstream 74bp 12357 chr10 119014861 119014861 1 + G T LUAD 119014862 + 119014842 119014882 41 TCCTGGTGCTGGCCGCCCTGGTACTCTTGGATGGAGGTGAG TCCTGGTGCTGGCCGCCCTTGTACTCTTGGATGGAGGTGAG < 41bp 0.495826478049013 0.805584796644601 NA NA prediction 0.611169593289201 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119014862 chr10:119014861 synonymous SNV . 0 20 hm7G_associated_SNPs_12956 0 0 0 0 2 SLC18A2 chr10:119014877 5'GT 119014877 Upstream 17bp 12358 chrX 18822079 18822079 1 + G T LUSC 18822080 + 18822060 18822100 41 AAATACGTGCCGAGGAGGGGGCTGCTATTTTGGACCAGATG AAATACGTGCCGAGGAGGGTGCTGCTATTTTGGACCAGATG < 41bp 0.502792460830227 0.808376339082962 NA NA prediction 0.611167756505472 Functional Gain - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18822080 chrX:18822079 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_12957 0 0 0 0 1 PPEF1 chrX:18822010 3'AG 18822010 Downstream 70bp 12359 chr11 119029566 119029566 1 + G T KIRC 119029567 + 119029547 119029587 41 GAGATGGCGGTCTTCATGAGGGAGCACCTCAACTACTGGTA GAGATGGCGGTCTTCATGATGGAGCACCTCAACTACTGGTA < 41bp 0.521675416044179 0.827257195795191 NA NA prediction 0.611163559502024 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119029567 chr11:119029566 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_12958 0 0 0 0 2 ABCG4 chr11:119029539 3'AG 119029539 Downstream 28bp 12360 chr11 119029566 119029566 1 + G T KIRC 119029567 + 119029547 119029587 41 GAGATGGCGGTCTTCATGAGGGAGCACCTCAACTACTGGTA GAGATGGCGGTCTTCATGATGGAGCACCTCAACTACTGGTA < 41bp 0.521675416044179 0.827257195795191 NA NA prediction 0.611163559502024 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119029567 chr11:119029566 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_12958 0 0 0 0 2 ABCG4 chr11:119029639 5'GT 119029639 Upstream 74bp 12361 chrX 70345250 70345250 1 + G T UCEC 70345251 + 70345231 70345271 41 CGGTTGGTCGTACTGTTTGGGGTGGGAAAGCAGCGAGATGA CGGTTGGTCGTACTGTTTGTGGTGGGAAAGCAGCGAGATGA < 41bp 0.503247030711371 0.808808409348704 NA NA prediction 0.611122757274666 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70345251 chrX:70345250 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12959 0 0 1 0 2 MED12 chrX:70345201 3'AG 70345201 Downstream 50bp 12362 chrX 70345250 70345250 1 + G T UCEC 70345251 + 70345231 70345271 41 CGGTTGGTCGTACTGTTTGGGGTGGGAAAGCAGCGAGATGA CGGTTGGTCGTACTGTTTGTGGTGGGAAAGCAGCGAGATGA < 41bp 0.503247030711371 0.808808409348704 NA NA prediction 0.611122757274666 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70345251 chrX:70345250 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12959 0 0 1 0 2 MED12 chrX:70345345 5'GT 70345345 Upstream 96bp 12363 chr2 44101029 44101029 1 + G T LUSC 44101030 + 44101010 44101050 41 CTTCCTCTATTTTGGCCATGGGAGCATCCAGCTCTCCTTCA CTTCCTCTATTTTGGCCATTGGAGCATCCAGCTCTCCTTCA < 41bp 0.485992801733975 0.805554418241955 NA NA prediction 0.611108836483909 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44101030 chr2:44101029 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_12960 0 0 0 0 1 ABCG8 chr2:44101125 5'GT 44101125 Upstream 97bp 12364 chr20 57244416 57244416 1 + G T LUAD 57244417 + 57244397 57244437 41 GGCCTGCTCCGAGCAGGAGGGGCGGCTGCTTGGGAACGTGG GGCCTGCTCCGAGCAGGAGTGGCGGCTGCTTGGGAACGTGG < 41bp 0.492051544823289 0.805524349610429 NA NA prediction 0.611048699220857 Functional Gain - STX16 ENSG00000124222;ENSG00000254995 CDS Human other chr20:57244417 chr20:57244416 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_12962 0 0 1 0 2 STX16 chr20:57244347 3'AG 57244347 Downstream 70bp 12365 chr20 57244416 57244416 1 + G T LUAD 57244417 + 57244397 57244437 41 GGCCTGCTCCGAGCAGGAGGGGCGGCTGCTTGGGAACGTGG GGCCTGCTCCGAGCAGGAGTGGCGGCTGCTTGGGAACGTGG < 41bp 0.492051544823289 0.805524349610429 NA NA prediction 0.611048699220857 Functional Gain - STX16 ENSG00000124222;ENSG00000254995 CDS Human other chr20:57244417 chr20:57244416 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_12962 0 0 1 0 2 STX16 chr20:57244509 5'GT 57244509 Upstream 94bp 12366 chr11 67069049 67069049 1 + G T HNSC 67069050 + 67069030 67069070 41 GAGCGCAACGAGCCCCTCCGGGACGAGGACGATGACCTCCT GAGCGCAACGAGCCCCTCCTGGACGAGGACGATGACCTCCT < 41bp 0.483102113526216 0.805515449758045 NA NA prediction 0.61103089951609 Functional Gain - ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67069050 chr11:67069049 nonsynonymous SNV 0.606 3 20 hm7G_associated_SNPs_12963 0 0 1 0 2 ANKRD13D chr11:67068959 3'AG 67068959 Downstream 91bp 12367 chr11 67069049 67069049 1 + G T HNSC 67069050 + 67069030 67069070 41 GAGCGCAACGAGCCCCTCCGGGACGAGGACGATGACCTCCT GAGCGCAACGAGCCCCTCCTGGACGAGGACGATGACCTCCT < 41bp 0.483102113526216 0.805515449758045 NA NA prediction 0.61103089951609 Functional Gain - ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67069050 chr11:67069049 nonsynonymous SNV 0.606 3 20 hm7G_associated_SNPs_12963 0 0 1 0 2 ANKRD13D chr11:67069122 5'GT 67069122 Upstream 74bp 12368 chr16 67290943 67290943 1 + G T STAD 67290944 + 67290924 67290964 41 CTCGTCATCCTACTGGATAGGACCAAGGTCCCTGCCAAGGA CTCGTCATCCTACTGGATATGACCAAGGTCCCTGCCAAGGA < 41bp 0.512443814802626 0.817951312208776 NA NA prediction 0.6110149948123 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67290944 chr16:67290943 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_12964 0 0 1 0 1 SLC9A5 chr16:67291016 5'GT 67291016 Upstream 74bp 12369 chr19 2991942 2991942 1 + G T UCEC 2991943 + 2991923 2991963 41 CTGCGGTGCTGGGACCAGAGGACCATCATGAAACCTCTGGA CTGCGGTGCTGGGACCAGATGACCATCATGAAACCTCTGGA < 41bp 0.51626647337232 0.821764122669854 NA NA prediction 0.610995298595068 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2991943 chr19:2991942 nonsynonymous SNV 0.088 3 20 hm7G_associated_SNPs_12965 0 0 0 0 1 TLE6 chr19:2991982 5'GT 2991982 Upstream 41bp 12370 chr19 11408891 11408891 1 + G T LUSC 11408892 + 11408872 11408912 41 TCTCTGACGAATGTCCTCGGGCTGTCCTCCGCATACCTCCT TCTCTGACGAATGTCCTCGTGCTGTCCTCCGCATACCTCCT < 41bp 0.498763753572582 0.805479133284244 NA NA prediction 0.610958266568487 Functional Gain - TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11408892 chr19:11408891 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_12967 0 0 0 1 1 TSPAN16 chr19:11408818 3'AG 11408818 Downstream 74bp 12371 chr12 57994617 57994617 1 + G T UCEC 57994618 + 57994598 57994638 41 TAGTGCAGCTGAAGATCATGGACTACAGCCTTCTGCTAGGC TAGTGCAGCTGAAGATCATTGACTACAGCCTTCTGCTAGGC < 41bp 0.519494287167437 0.824957952213336 NA NA prediction 0.610927330091798 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57994618 chr12:57994617 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12969 0 0 0 0 1 PIP4K2C chr12:57994594 3'AG 57994594 Downstream 24bp 12372 chr10 105174888 105174888 1 + G T HNSC 105174889 + 105174869 105174909 41 GGAGAAGAAGTACCACATCGGGGATGAGGTCAAGTGCCGGG GGAGAAGAAGTACCACATCTGGGATGAGGTCAAGTGCCGGG < 41bp 0.514806908094486 0.82026089291436 NA NA prediction 0.610907969639747 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174889 chr10:105174888 nonsynonymous SNV 0.436 4 20 hm7G_associated_SNPs_12970 0 0 1 0 1 PDCD11 chr10:105174908 5'GT 105174908 Upstream 21bp 12373 chr11 60699222 60699222 1 + G T HNSC 60699223 + 60699203 60699243 41 GGAGAATAGCACTGGTGGGGGCGTAGCGGTCACTCGCCCCG GGAGAATAGCACTGGTGGGTGCGTAGCGGTCACTCGCCCCG < 41bp 0.500143473636714 0.805596288817431 NA NA prediction 0.610905630361435 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699223 chr11:60699222 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_12971 0 0 1 0 2 TMEM132A chr11:60699158 3'AG 60699158 Downstream 65bp 12374 chr11 60699222 60699222 1 + G T HNSC 60699223 + 60699203 60699243 41 GGAGAATAGCACTGGTGGGGGCGTAGCGGTCACTCGCCCCG GGAGAATAGCACTGGTGGGTGCGTAGCGGTCACTCGCCCCG < 41bp 0.500143473636714 0.805596288817431 NA NA prediction 0.610905630361435 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699223 chr11:60699222 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_12971 0 0 1 0 2 TMEM132A chr11:60699161 3'AG 60699161 Downstream 62bp 12375 chr17 55062815 55062815 1 + G T THCA 55062816 + 55062796 55062836 41 GACAGTGATCTCAAACCACGGAAAACCACCTGGGTACAGTG GACAGTGATCTCAAACCACTGAAAACCACCTGGGTACAGTG < 41bp 0.507801777077557 0.81324953831986 NA NA prediction 0.610895522484607 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55062816 chr17:55062815 nonsynonymous SNV 0.273 5 20 hm7G_associated_SNPs_12972 0 0 0 0 2 SCPEP1 chr17:55062739 3'AG 55062739 Downstream 77bp 12376 chr17 55062815 55062815 1 + G T THCA 55062816 + 55062796 55062836 41 GACAGTGATCTCAAACCACGGAAAACCACCTGGGTACAGTG GACAGTGATCTCAAACCACTGAAAACCACCTGGGTACAGTG < 41bp 0.507801777077557 0.81324953831986 NA NA prediction 0.610895522484607 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55062816 chr17:55062815 nonsynonymous SNV 0.273 5 20 hm7G_associated_SNPs_12972 0 0 0 0 2 SCPEP1 chr17:55062828 5'GT 55062828 Upstream 14bp 12377 chr3 133475742 133475742 1 + G T OV 133475743 + 133475723 133475763 41 TGGACAACACCCGGAAGCCGGTAGATGAATACAAGGACTGC TGGACAACACCCGGAAGCCTGTAGATGAATACAAGGACTGC < 41bp 0.498653878711668 0.805439624572255 NA NA prediction 0.610879249144511 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133475743 chr3:133475742 synonymous SNV . 0 20 hm7G_associated_SNPs_12973 0 0 1 0 1 TF chr3:133475675 3'AG 133475675 Downstream 68bp 12378 chr10 43612115 43612115 1 + G T HNSC 43612116 + 43612096 43612136 41 AATTTGGAAAAGTGGTCAAGGCAACGGCCTTCCATCTGAAA AATTTGGAAAAGTGGTCAATGCAACGGCCTTCCATCTGAAA < 41bp 0.480920461325934 0.805428213205667 NA NA prediction 0.610856426411333 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43612116 chr10:43612115 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_12974 0 0 0 0 2 RET chr10:43612032 3'AG 43612032 Downstream 84bp 12379 chr10 43612115 43612115 1 + G T HNSC 43612116 + 43612096 43612136 41 AATTTGGAAAAGTGGTCAAGGCAACGGCCTTCCATCTGAAA AATTTGGAAAAGTGGTCAATGCAACGGCCTTCCATCTGAAA < 41bp 0.480920461325934 0.805428213205667 NA NA prediction 0.610856426411333 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43612116 chr10:43612115 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_12974 0 0 0 0 2 RET chr10:43612179 5'GT 43612179 Upstream 65bp 12380 chr7 128359029 128359029 1 + G T LUAD 128359030 + 128359010 128359050 41 TCCACTTCTGGATCCGACTGGTTCAAATTCTGCAAAAGGGG TCCACTTCTGGATCCGACTTGTTCAAATTCTGCAAAAGGGG < 41bp 0.501578531022945 0.806999202177201 NA NA prediction 0.610841342308511 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128359030 chr7:128359029 synonymous SNV . 0 20 hm7G_associated_SNPs_12975 0 0 0 0 2 FAM71F1 chr7:128358946 3'AG 128358946 Downstream 84bp 12381 chr7 128359029 128359029 1 + G T LUAD 128359030 + 128359010 128359050 41 TCCACTTCTGGATCCGACTGGTTCAAATTCTGCAAAAGGGG TCCACTTCTGGATCCGACTTGTTCAAATTCTGCAAAAGGGG < 41bp 0.501578531022945 0.806999202177201 NA NA prediction 0.610841342308511 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128359030 chr7:128359029 synonymous SNV . 0 20 hm7G_associated_SNPs_12975 0 0 0 0 2 FAM71F1 chr7:128358982 3'AG 128358982 Downstream 48bp 12382 chr7 73954274 73954274 1 + G T LUAD 73954275 + 73954255 73954295 41 CCTGCCATCGGAGGATTCTGGTTATGGGATGGAGATGCTGA CCTGCCATCGGAGGATTCTTGTTATGGGATGGAGATGCTGA < 41bp 0.511784205627693 0.817146550330669 NA NA prediction 0.610724689405952 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73954275 chr7:73954274 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_12977 0 0 1 0 2 GTF2IRD1 chr7:73954209 3'AG 73954209 Downstream 66bp 12383 chr7 73954274 73954274 1 + G T LUAD 73954275 + 73954255 73954295 41 CCTGCCATCGGAGGATTCTGGTTATGGGATGGAGATGCTGA CCTGCCATCGGAGGATTCTTGTTATGGGATGGAGATGCTGA < 41bp 0.511784205627693 0.817146550330669 NA NA prediction 0.610724689405952 Functional Gain - GTF2IRD1 ENSG00000006704 CDS Human protein_coding chr7:73954275 chr7:73954274 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_12977 0 0 1 0 2 GTF2IRD1 chr7:73954298 5'GT 73954298 Upstream 25bp 12384 chr9 34490455 34490455 1 + G T UCEC 34490456 + 34490436 34490476 41 CAGTTCAACTTCAGTGAGAGGGCCTCACAGACCTACAACAA CAGTTCAACTTCAGTGAGATGGCCTCACAGACCTACAACAA < 41bp 0.489868622496235 0.805346308440463 NA NA prediction 0.610692616880926 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34490456 chr9:34490455 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_12978 0 0 0 0 2 DNAI1 chr9:34490367 3'AG 34490367 Downstream 89bp 12385 chr9 34490455 34490455 1 + G T UCEC 34490456 + 34490436 34490476 41 CAGTTCAACTTCAGTGAGAGGGCCTCACAGACCTACAACAA CAGTTCAACTTCAGTGAGATGGCCTCACAGACCTACAACAA < 41bp 0.489868622496235 0.805346308440463 NA NA prediction 0.610692616880926 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34490456 chr9:34490455 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_12978 0 0 0 0 2 DNAI1 chr9:34490486 5'GT 34490486 Upstream 32bp 12386 chr15 22945048 22945048 1 + G T ESCA 22945049 + 22945029 22945069 41 GCCTTGTGCAGGTGGTCACGGGCTCGGGCCGCCAGGAGGCC GCCTTGTGCAGGTGGTCACTGGCTCGGGCCGCCAGGAGGCC < 41bp 0.522171432152845 0.827486876801643 NA NA prediction 0.610630889297594 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22945049 chr15:22945048 synonymous SNV . 0 20 hm7G_associated_SNPs_12981 0 0 1 0 1 CYFIP1 chr15:22945040 3'AG 22945040 Downstream 9bp 12387 chr17 40721269 40721269 1 + G T SARC 40721270 + 40721250 40721290 41 TCCCCACTTGCCAGCAGCAGGACTTCTCCATTGGCTCCCAA TCCCCACTTGCCAGCAGCATGACTTCTCCATTGGCTCCCAA < 41bp 0.525728280664067 0.83102687435885 NA NA prediction 0.610597187389566 Functional Gain - MLX ENSG00000108788 CDS Human protein_coding chr17:40721270 chr17:40721269 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12983 0 0 1 0 1 MLX chr17:40721222 3'AG 40721222 Downstream 48bp 12388 chr6 43126581 43126581 1 + G T THCA 43126582 + 43126562 43126602 41 TATGCACCCAGGTAGCCCTGGGCATGGAGCACCTGTCCAAC TATGCACCCAGGTAGCCCTTGGCATGGAGCACCTGTCCAAC < 41bp 0.479220620884948 0.80529111884705 NA NA prediction 0.610582237694099 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43126582 chr6:43126581 synonymous SNV . 0 20 hm7G_associated_SNPs_12984 0 0 1 0 1 PTK7 chr6:43126555 3'AG 43126555 Downstream 27bp 12389 chr17 12862136 12862136 1 + G T LUAD 12862137 + 12862117 12862157 41 GACATGGACCCTGCTGACCGGCGCCAGCCCGAGCAGGCCCG GACATGGACCCTGCTGACCTGCGCCAGCCCGAGCAGGCCCG < 41bp 0.532609888787838 0.837893911588525 NA NA prediction 0.610568045601375 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12862137 chr17:12862136 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_12985 0 0 0 0 1 ARHGAP44 chr17:12862214 5'GT 12862214 Upstream 79bp 12390 chr8 27297833 27297833 1 + G T THYM 27297834 + 27297814 27297854 41 AGGATGTCATCGGGGTGCTGGAGAAAGGAGACCGGCTGCCC AGGATGTCATCGGGGTGCTTGAGAAAGGAGACCGGCTGCCC < 41bp 0.525404758905383 0.830688097496679 NA NA prediction 0.610566677182592 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27297834 chr8:27297833 synonymous SNV . 0 20 hm7G_associated_SNPs_12986 0 0 1 0 1 PTK2B chr8:27297754 3'AG 27297754 Downstream 80bp 12391 chr16 19087043 19087043 1 + G T LUAD 19087044 + 19087024 19087064 41 CTGGGTTTAACAATCCCAGGGGCGGGGACCGCCTTGCTCGG CTGGGTTTAACAATCCCAGTGGCGGGGACCGCCTTGCTCGG < 41bp 0.514875654150671 0.820145822148926 NA NA prediction 0.610540335996509 Functional Gain - COQ7 ENSG00000167186 CDS Human protein_coding chr16:19087044 chr16:19087043 nonsynonymous SNV 0.213 4 20 hm7G_associated_SNPs_12988 0 0 0 0 1 COQ7 chr16:19087043 3'AG 19087043 Downstream 1bp 12392 chr11 65172535 65172535 1 + G T STAD 65172536 + 65172516 65172556 41 CCACCATCGACTACGTGGAGGACGGTGAGCAGCCCTTCTGT CCACCATCGACTACGTGGATGACGGTGAGCAGCCCTTCTGT < 41bp 0.495624892507854 0.805263151378193 NA NA prediction 0.610526302756385 Functional Gain - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65172536 chr11:65172535 nonsynonymous SNV 0.923 1 20 hm7G_associated_SNPs_12989 0 0 1 0 1 FRMD8 chr11:65172539 5'GT 65172539 Upstream 5bp 12393 chr19 4037483 4037483 1 + G T STAD 4037484 + 4037464 4037504 41 AGCGCAGCTGCAGCCCGCAGGGCGCCATCCTCGTGCTGGGT AGCGCAGCTGCAGCCCGCATGGCGCCATCCTCGTGCTGGGT < 41bp 0.499412863689585 0.805242438607757 NA NA prediction 0.610484877215514 Functional Gain - PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4037484 chr19:4037483 nonsynonymous SNV 0.854 0 20 hm7G_associated_SNPs_12991 0 0 0 0 1 PIAS4 chr19:4037502 5'GT 4037502 Upstream 20bp 12394 chr3 184298517 184298517 1 + G T LUAD 184298518 + 184298498 184298538 41 CCTGTGCCCCCCTCACCAGGGCGGGAAGATCCCCATCCGCT CCTGTGCCCCCCTCACCAGTGCGGGAAGATCCCCATCCGCT < 41bp 0.509057577991115 0.814271895214007 NA NA prediction 0.610428634445785 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184298518 chr3:184298517 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_12994 0 0 0 0 1 EPHB3 chr3:184298517 3'AG 184298517 Downstream 1bp 12395 chr8 22414398 22414398 1 + G T UCEC 22414399 + 22414379 22414419 41 CGGGCCCGTGGACGAGAGCGGCATGCCCATTGCCCCCCGAT CGGGCCCGTGGACGAGAGCTGCATGCCCATTGCCCCCCGAT < 41bp 0.519245362556866 0.824456755318512 NA NA prediction 0.610422785523291 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22414399 chr8:22414398 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_12995 0 0 1 0 1 SORBS3 chr8:22414421 5'GT 22414421 Upstream 24bp 12396 chr16 56976054 56976054 1 + G T CESC 56976055 + 56976035 56976075 41 CCTTTGAAGGCATCACGTTGGGTGGTTTCCATTTAGACCGA CCTTTGAAGGCATCACGTTTGGTGGTTTCCATTTAGACCGA < 41bp 0.504556175248619 0.809767498786207 NA NA prediction 0.610422647075175 Functional Gain - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56976055 chr16:56976054 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12996 0 0 1 0 2 HERPUD1 chr16:56976044 3'AG 56976044 Downstream 11bp 12397 chr16 56976054 56976054 1 + G T CESC 56976055 + 56976035 56976075 41 CCTTTGAAGGCATCACGTTGGGTGGTTTCCATTTAGACCGA CCTTTGAAGGCATCACGTTTGGTGGTTTCCATTTAGACCGA < 41bp 0.504556175248619 0.809767498786207 NA NA prediction 0.610422647075175 Functional Gain - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56976055 chr16:56976054 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_12996 0 0 1 0 2 HERPUD1 chr16:56976149 5'GT 56976149 Upstream 96bp 12398 chr3 39178787 39178787 1 + G T LUAD 39178788 + 39178768 39178808 41 TCCAGCCAGACCCAGCTGCGGCTGCTGCAGGGCCTCTGCCG TCCAGCCAGACCCAGCTGCTGCTGCTGCAGGGCCTCTGCCG < 41bp 0.526553677971758 0.831764331585748 NA NA prediction 0.61042130722798 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39178788 chr3:39178787 nonsynonymous SNV 0.834 1 20 hm7G_associated_SNPs_12997 0 0 0 0 1 TTC21A chr3:39178878 5'GT 39178878 Upstream 92bp 12399 chr21 47422160 47422160 1 + G T LGG 47422161 + 47422141 47422181 41 GAGCCTGCAGTGGATGGCGGGCGGCACCTTCACGGGGGAGG GAGCCTGCAGTGGATGGCGTGCGGCACCTTCACGGGGGAGG < 41bp 0.481319720625386 0.805209482716811 NA NA prediction 0.610418965433623 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47422161 chr21:47422160 nonsynonymous SNV 0.088 5 20 hm7G_associated_SNPs_12998 0 0 0 0 1 COL6A1 chr21:47422132 3'AG 47422132 Downstream 29bp 12400 chr1 6648171 6648171 1 + G T UCEC 6648172 + 6648152 6648192 41 GCCACGCCTTCACCCAAAAGGCCAATCTCAACATGCACCTG GCCACGCCTTCACCCAAAATGCCAATCTCAACATGCACCTG < 41bp 0.530136912324918 0.835337988461762 NA NA prediction 0.610402152273688 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648172 chr1:6648171 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12999 0 0 1 0 2 ZBTB48 chr1:6648120 3'AG 6648120 Downstream 52bp 12401 chr1 6648171 6648171 1 + G T UCEC 6648172 + 6648152 6648192 41 GCCACGCCTTCACCCAAAAGGCCAATCTCAACATGCACCTG GCCACGCCTTCACCCAAAATGCCAATCTCAACATGCACCTG < 41bp 0.530136912324918 0.835337988461762 NA NA prediction 0.610402152273688 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648172 chr1:6648171 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_12999 0 0 1 0 2 ZBTB48 chr1:6648256 5'GT 6648256 Upstream 86bp 12402 chr11 113265773 113265773 1 + G T PRAD 113265774 + 113265754 113265794 41 TGTTCCTGGAGAGTAACAAGGCCCCAGGACCTAAATATGAT TGTTCCTGGAGAGTAACAATGCCCCAGGACCTAAATATGAT < 41bp 0.511826636378864 0.817019983122471 NA NA prediction 0.610386693487214 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113265774 chr11:113265773 nonsynonymous SNV 0.586 2 20 hm7G_associated_SNPs_13000 0 0 0 0 1 ANKK1 chr11:113265802 5'GT 113265802 Upstream 30bp 12403 chr17 7909749 7909749 1 + G T LUSC 7909750 + 7909730 7909770 41 GGGGCGTGGCAGAAGCGCGGGCTGCCGCAGGTGGCAGATGG GGGGCGTGGCAGAAGCGCGTGCTGCCGCAGGTGGCAGATGG < 41bp 0.525837814392232 0.83102954542664 NA NA prediction 0.610383462068816 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7909750 chr17:7909749 synonymous SNV . 0 20 hm7G_associated_SNPs_13001 0 0 0 0 1 GUCY2D chr17:7909681 3'AG 7909681 Downstream 69bp 12404 chr22 50313456 50313456 1 + G T UCEC 50313457 + 50313437 50313477 41 ATCAGATGCTAGAGGCGCAGGAGGAGCACCTGGAGGCCTGG ATCAGATGCTAGAGGCGCATGAGGAGCACCTGGAGGCCTGG < 41bp 0.525768174098226 0.830944806270448 NA NA prediction 0.610353264344444 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50313457 chr22:50313456 nonsynonymous SNV 0.368 0 20 hm7G_associated_SNPs_13003 0 0 1 0 2 CRELD2 chr22:50313378 3'AG 50313378 Downstream 79bp 12405 chr22 50313456 50313456 1 + G T UCEC 50313457 + 50313437 50313477 41 ATCAGATGCTAGAGGCGCAGGAGGAGCACCTGGAGGCCTGG ATCAGATGCTAGAGGCGCATGAGGAGCACCTGGAGGCCTGG < 41bp 0.525768174098226 0.830944806270448 NA NA prediction 0.610353264344444 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50313457 chr22:50313456 nonsynonymous SNV 0.368 0 20 hm7G_associated_SNPs_13003 0 0 1 0 2 CRELD2 chr22:50313488 5'GT 50313488 Upstream 33bp 12406 chr17 80676808 80676808 1 + G T LUAD 80676809 + 80676789 80676829 41 GAATGTTTGAAGGTGAGATGGCAAGTTTAACTGCCATCCTG GAATGTTTGAAGGTGAGATTGCAAGTTTAACTGCCATCCTG < 41bp 0.506093643544206 0.81126216537032 NA NA prediction 0.610337043652229 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80676809 chr17:80676808 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13004 0 0 1 0 1 FN3KRP chr17:80676782 3'AG 80676782 Downstream 27bp 12407 chr1 9030990 9030990 1 + G T UCEC 9030991 + 9030971 9031011 41 ATCCACAACGATTACCGCAGGACCCAGCCCCTGAACCACAG ATCCACAACGATTACCGCATGACCCAGCCCCTGAACCACAG < 41bp 0.502384361529428 0.807511203604163 NA NA prediction 0.610253684149471 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9030991 chr1:9030990 nonsynonymous SNV 0.047 0 20 hm7G_associated_SNPs_13006 0 0 0 0 1 CA6 chr1:9030926 3'AG 9030926 Downstream 65bp 12408 chr18 74639295 74639295 1 + G T STAD 74639296 + 74639276 74639316 41 TATTGGCTCAGCAGCTCACGGGGGAGCCTGGCCTGGCCCCA TATTGGCTCAGCAGCTCACTGGGGAGCCTGGCCTGGCCCCA < 41bp 0.48301517770744 0.805115610116666 NA NA prediction 0.610231220233333 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74639296 chr18:74639295 synonymous SNV . 0 20 hm7G_associated_SNPs_13008 0 0 0 0 1 ZNF236 chr18:74639233 3'AG 74639233 Downstream 63bp 12409 chr10 101606844 101606844 1 + G T LUAD 101606845 + 101606825 101606865 41 TGTGGCCAGCCTGCAACTTGGGTTATCCCACGAAGTGACAG TGTGGCCAGCCTGCAACTTTGGTTATCCCACGAAGTGACAG < 41bp 0.490700241784248 0.805077288548561 NA NA prediction 0.610154577097122 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101606845 chr10:101606844 nonsynonymous SNV 0.414 5 20 hm7G_associated_SNPs_13010 0 0 1 0 1 ABCC2 chr10:101606884 5'GT 101606884 Upstream 41bp 12410 chr22 38328589 38328589 1 + G T UCEC 38328590 + 38328570 38328610 41 ACCAGTACATCCCTGAGGAGGACATCCATGGAGAGATGGAT ACCAGTACATCCCTGAGGATGACATCCATGGAGAGATGGAT < 41bp 0.48141391385536 0.805073489252455 NA NA prediction 0.61014697850491 Functional Gain - MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38328590 chr22:38328589 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13011 0 0 1 0 2 MICALL1 chr22:38328560 3'AG 38328560 Downstream 30bp 12411 chr22 38328589 38328589 1 + G T UCEC 38328590 + 38328570 38328610 41 ACCAGTACATCCCTGAGGAGGACATCCATGGAGAGATGGAT ACCAGTACATCCCTGAGGATGACATCCATGGAGAGATGGAT < 41bp 0.48141391385536 0.805073489252455 NA NA prediction 0.61014697850491 Functional Gain - MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38328590 chr22:38328589 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13011 0 0 1 0 2 MICALL1 chr22:38328686 5'GT 38328686 Upstream 98bp 12412 chr2 235961301 235961301 1 + G T LUSC 235961302 + 235961282 235961322 41 AGGTGGCCCAGCGCTGGCGGGAGCTGGCTGAGAAGCTGGCC AGGTGGCCCAGCGCTGGCGTGAGCTGGCTGAGAAGCTGGCC < 41bp 0.482341946104043 0.805061288268509 NA NA prediction 0.610122576537018 Functional Gain - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235961302 chr2:235961301 synonymous SNV . 0 20 hm7G_associated_SNPs_13013 0 0 0 0 2 SH3BP4 chr2:235961206 3'AG 235961206 Downstream 96bp 12413 chr2 235961301 235961301 1 + G T LUSC 235961302 + 235961282 235961322 41 AGGTGGCCCAGCGCTGGCGGGAGCTGGCTGAGAAGCTGGCC AGGTGGCCCAGCGCTGGCGTGAGCTGGCTGAGAAGCTGGCC < 41bp 0.482341946104043 0.805061288268509 NA NA prediction 0.610122576537018 Functional Gain - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235961302 chr2:235961301 synonymous SNV . 0 20 hm7G_associated_SNPs_13013 0 0 0 0 2 SH3BP4 chr2:235961394 5'GT 235961394 Upstream 94bp 12414 chr16 31388373 31388373 1 + G T LUSC 31388374 + 31388354 31388394 41 AAGGCTGTCCTGGGAGACCGGCTGCTTCTGACAGCCAATGT AAGGCTGTCCTGGGAGACCTGCTGCTTCTGACAGCCAATGT < 41bp 0.483905035216416 0.805058010535784 NA NA prediction 0.610116021071567 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31388374 chr16:31388373 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_13014 0 0 0 0 2 ITGAX chr16:31388321 3'AG 31388321 Downstream 53bp 12415 chr16 31388373 31388373 1 + G T LUSC 31388374 + 31388354 31388394 41 AAGGCTGTCCTGGGAGACCGGCTGCTTCTGACAGCCAATGT AAGGCTGTCCTGGGAGACCTGCTGCTTCTGACAGCCAATGT < 41bp 0.483905035216416 0.805058010535784 NA NA prediction 0.610116021071567 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31388374 chr16:31388373 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_13014 0 0 0 0 2 ITGAX chr16:31388400 5'GT 31388400 Upstream 28bp 12416 chr19 50804978 50804978 1 + G T LUAD 50804979 + 50804959 50804999 41 CTCAGCCAAGGCAGAGAGCGGGCGGCAGCAGCTGGAACGGC CTCAGCCAAGGCAGAGAGCTGGCGGCAGCAGCTGGAACGGC < 41bp 0.515222693360701 0.820278098697014 NA NA prediction 0.610110810672626 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50804979 chr19:50804978 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_13015 0 0 1 0 1 MYH14 chr19:50804918 3'AG 50804918 Downstream 61bp 12417 chr19 50753939 50753939 1 + G T LUSC 50753940 + 50753920 50753960 41 TCAGTGTTCTCCACTACGCGGGCAAGGTAGGGGCTGGGGCC TCAGTGTTCTCCACTACGCTGGCAAGGTAGGGGCTGGGGCC < 41bp 0.520342662823508 0.82538228031481 NA NA prediction 0.610079234982603 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50753940 chr19:50753939 synonymous SNV . 0 20 hm7G_associated_SNPs_13016 0 0 0 0 1 MYH14 chr19:50753945 5'GT 50753945 Upstream 7bp 12418 chr9 134379676 134379676 1 + G T COAD 134379677 + 134379657 134379697 41 AGCCTTGTGGCCCTGACTGGGATGGGGTTACTGAGCCGGCT AGCCTTGTGGCCCTGACTGTGATGGGGTTACTGAGCCGGCT < 41bp 0.496168366027029 0.8050377326724 NA NA prediction 0.6100754653448 Functional Gain - POMT1 ENSG00000130714 CDS Human protein_coding chr9:134379677 chr9:134379676 nonsynonymous SNV 0.454 1 20 hm7G_associated_SNPs_13017 0 0 1 0 1 POMT1 chr9:134379727 5'GT 134379727 Upstream 52bp 12419 chr1 32672208 32672208 1 + G T STAD 32672209 + 32672189 32672229 41 GTGAAGAGTCTGAGGGAGAGGCCACCTGGGAGGAGATGGTG GTGAAGAGTCTGAGGGAGATGCCACCTGGGAGGAGATGGTG < 41bp 0.515985686108195 0.820976379295191 NA NA prediction 0.609981386373993 Functional Gain - IQCC ENSG00000160051 CDS Human protein_coding chr1:32672209 chr1:32672208 nonsynonymous SNV 0.084 0 20 hm7G_associated_SNPs_13018 0 0 1 0 1 IQCC chr1:32672110 3'AG 32672110 Downstream 99bp 12420 chr6 42977163 42977163 1 + G T BLCA 42977164 + 42977144 42977184 41 ATGTTCCCTGCACTCTACAGGAACTCCAAGAGCCACTGGAA ATGTTCCCTGCACTCTACATGAACTCCAAGAGCCACTGGAA < 41bp 0.522797350749177 0.827767111484893 NA NA prediction 0.609939521471432 Functional Gain - PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42977164 chr6:42977163 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_13021 0 0 1 0 1 PPP2R5D chr6:42977187 5'GT 42977187 Upstream 25bp 12421 chr7 128846204 128846204 1 + G T STAD 128846205 + 128846185 128846225 41 CTGTGGCAATCCTTGCTGTGGCGCAGGTATAGTGACTGGTA CTGTGGCAATCCTTGCTGTTGCGCAGGTATAGTGACTGGTA < 41bp 0.52403575509137 0.829004082853217 NA NA prediction 0.609936655523694 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128846205 chr7:128846204 synonymous SNV . 0 20 hm7G_associated_SNPs_13022 0 0 0 0 1 SMO chr7:128846210 5'GT 128846210 Upstream 7bp 12422 chr19 6916318 6916318 1 + G T LIHC 6916319 + 6916299 6916339 41 AGAATGTGACGTTGGACTTGGTAGCCAAGGGGGATAAGATG AGAATGTGACGTTGGACTTTGTAGCCAAGGGGGATAAGATG < 41bp 0.504132697353585 0.809098454364392 NA NA prediction 0.609931514021615 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6916319 chr19:6916318 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_13023 0 0 0 0 2 ADGRE1 chr19:6916260 3'AG 6916260 Downstream 59bp 12423 chr19 6916318 6916318 1 + G T LIHC 6916319 + 6916299 6916339 41 AGAATGTGACGTTGGACTTGGTAGCCAAGGGGGATAAGATG AGAATGTGACGTTGGACTTTGTAGCCAAGGGGGATAAGATG < 41bp 0.504132697353585 0.809098454364392 NA NA prediction 0.609931514021615 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6916319 chr19:6916318 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_13023 0 0 0 0 2 ADGRE1 chr19:6916379 5'GT 6916379 Upstream 62bp 12424 chr8 75924705 75924705 1 + G T LUAD 75924706 + 75924686 75924726 41 GAAAGATCTGCAGAATCCTGGGCTGAAAGTTGCTTGTGGGA GAAAGATCTGCAGAATCCTTGGCTGAAAGTTGCTTGTGGGA < 41bp 0.496289082397762 0.8049088403949 NA NA prediction 0.609817680789801 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75924706 chr8:75924705 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13024 0 0 1 0 2 CRISPLD1 chr8:75924668 3'AG 75924668 Downstream 38bp 12425 chr8 75924705 75924705 1 + G T LUAD 75924706 + 75924686 75924726 41 GAAAGATCTGCAGAATCCTGGGCTGAAAGTTGCTTGTGGGA GAAAGATCTGCAGAATCCTTGGCTGAAAGTTGCTTGTGGGA < 41bp 0.496289082397762 0.8049088403949 NA NA prediction 0.609817680789801 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75924706 chr8:75924705 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13024 0 0 1 0 2 CRISPLD1 chr8:75924786 5'GT 75924786 Upstream 82bp 12426 chr7 2687687 2687687 1 + G T GBM 2687688 + 2687668 2687708 41 CTCCAAGGGCATCCTGGTGGGGTGAGTCTGGGGGTGTCGGC CTCCAAGGGCATCCTGGTGTGGTGAGTCTGGGGGTGTCGGC < 41bp 0.495475761300317 0.804905397905283 NA NA prediction 0.609810795810565 Functional Gain - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2687688 chr7:2687687 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_13025 0 0 1 0 2 TTYH3 chr7:2687593 3'AG 2687593 Downstream 95bp 12427 chr7 2687687 2687687 1 + G T GBM 2687688 + 2687668 2687708 41 CTCCAAGGGCATCCTGGTGGGGTGAGTCTGGGGGTGTCGGC CTCCAAGGGCATCCTGGTGTGGTGAGTCTGGGGGTGTCGGC < 41bp 0.495475761300317 0.804905397905283 NA NA prediction 0.609810795810565 Functional Gain - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2687688 chr7:2687687 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_13025 0 0 1 0 2 TTYH3 chr7:2687688 5'GT 2687688 Upstream 2bp 12428 chr4 74310810 74310810 1 + G T PAAD 74310811 + 74310791 74310831 41 ACATGAGCACTGTTGCAGAGGAGATGTGCTGGATTGTCTGC ACATGAGCACTGTTGCAGATGAGATGTGCTGGATTGTCTGC < 41bp 0.497381533110646 0.804877522979975 NA NA prediction 0.609755045959951 Functional Gain - AFP ENSG00000081051 CDS Human protein_coding chr4:74310811 chr4:74310810 stopgain 0.253 1 20 hm7G_associated_SNPs_13026 0 0 1 0 1 AFP chr4:74310839 5'GT 74310839 Upstream 30bp 12429 chr19 36275140 36275140 1 + G T LUAD 36275141 + 36275121 36275161 41 GGGAAGTTCGGGTGCAGTCGGTGGTGGTGGAGTTTCTGCTC GGGAAGTTCGGGTGCAGTCTGTGGTGGTGGAGTTTCTGCTC < 41bp 0.496447737981367 0.804848148965987 NA NA prediction 0.609696297931975 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36275141 chr19:36275140 synonymous SNV . 0 20 hm7G_associated_SNPs_13027 0 0 1 0 2 ARHGAP33 chr19:36275074 3'AG 36275074 Downstream 67bp 12430 chr19 36275140 36275140 1 + G T LUAD 36275141 + 36275121 36275161 41 GGGAAGTTCGGGTGCAGTCGGTGGTGGTGGAGTTTCTGCTC GGGAAGTTCGGGTGCAGTCTGTGGTGGTGGAGTTTCTGCTC < 41bp 0.496447737981367 0.804848148965987 NA NA prediction 0.609696297931975 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36275141 chr19:36275140 synonymous SNV . 0 20 hm7G_associated_SNPs_13027 0 0 1 0 2 ARHGAP33 chr19:36275219 5'GT 36275219 Upstream 80bp 12431 chr16 57180047 57180047 1 + G T UCEC 57180048 + 57180028 57180068 41 GGGTCATCAGTGACATGGAGGAGACACGGCATGCCGTGGTG GGGTCATCAGTGACATGGATGAGACACGGCATGCCGTGGTG < 41bp 0.484418764259317 0.804836678125468 NA NA prediction 0.609673356250936 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57180048 chr16:57180047 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13028 0 0 1 0 1 CPNE2 chr16:57179997 3'AG 57179997 Downstream 51bp 12432 chr2 32927929 32927929 1 + G T THCA 32927930 + 32927910 32927950 41 ACATCAGCCTTGATCCTCCGGACAAAACTTGAGAAAGGAAG ACATCAGCCTTGATCCTCCTGACAAAACTTGAGAAAGGAAG < 41bp 0.489273941174812 0.804836287472671 NA NA prediction 0.609672574945342 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32927930 chr2:32927929 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13029 0 0 1 0 1 TTC27 chr2:32927987 5'GT 32927987 Upstream 59bp 12433 chr11 8118834 8118834 1 + G T UCEC 8118835 + 8118815 8118855 41 CAGTGGACGTTGAGGTCCAGGATCTTGAGGAGTTTGCACTG CAGTGGACGTTGAGGTCCATGATCTTGAGGAGTTTGCACTG < 41bp 0.479628598407598 0.804822656179801 NA NA prediction 0.609645312359601 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8118835 chr11:8118834 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13031 0 0 0 0 1 TUB chr11:8118775 3'AG 8118775 Downstream 60bp 12434 chr11 66272131 66272131 1 + G T STAD 66272132 + 66272112 66272152 41 AGGGCGGGCCCTGTACGAGGGGTATGCAACAGTCACTGATG AGGGCGGGCCCTGTACGAGTGGTATGCAACAGTCACTGATG < 41bp 0.479916996334252 0.804817287261866 NA NA prediction 0.609634574523733 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272132 chr11:66272131 nonsynonymous SNV 0.897 2 20 hm7G_associated_SNPs_13033 0 0 1 0 1 DPP3 chr11:66272083 3'AG 66272083 Downstream 49bp 12435 chr16 2505427 2505427 1 + G T STAD 2505428 + 2505408 2505448 41 CAGCCTCCAGGAAGACAGAGGCAGCTTCGTTACCACCCCCA CAGCCTCCAGGAAGACAGATGCAGCTTCGTTACCACCCCCA < 41bp 0.474261229284492 0.804789443322264 NA NA prediction 0.609578886644528 Functional Gain - CCNF ENSG00000162063 CDS Human protein_coding chr16:2505428 chr16:2505427 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_13034 0 0 1 0 1 CCNF chr16:2505396 3'AG 2505396 Downstream 32bp 12436 chr5 96329624 96329624 1 + G T UCEC 96329625 + 96329605 96329645 41 ACAGTAACACTTCTTCAATGGCGGATAGAAAGCTGGTGACT ACAGTAACACTTCTTCAATTGCGGATAGAAAGCTGGTGACT < 41bp 0.512521102922871 0.817295796290537 NA NA prediction 0.609549386735332 Functional Gain - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96329625 chr5:96329624 nonsynonymous SNV 0.967 0 20 hm7G_associated_SNPs_13035 0 0 1 0 1 LNPEP chr5:96329675 5'GT 96329675 Upstream 52bp 12437 chr8 42174308 42174308 1 + G T UCEC 42174309 + 42174289 42174329 41 AGAGTCTGCAGAGCTTGAAGGCCAGAATCCAACAGGACACG AGAGTCTGCAGAGCTTGAATGCCAGAATCCAACAGGACACG < 41bp 0.48942131539541 0.804772045707663 NA NA prediction 0.609544091415326 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42174309 chr8:42174308 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_13036 0 0 1 0 1 IKBKB chr8:42174228 3'AG 42174228 Downstream 81bp 12438 chr6 161135861 161135861 1 + G T STAD 161135862 + 161135842 161135882 41 CAGTGGAGAAAACTATGACGGCAAAATTTCCAAGACCATGT CAGTGGAGAAAACTATGACTGCAAAATTTCCAAGACCATGT < 41bp 0.515258512694491 0.820018164395619 NA NA prediction 0.609519303402257 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161135862 chr6:161135861 nonsynonymous SNV 0.792 4 20 hm7G_associated_SNPs_13037 0 0 0 0 2 PLG chr6:161135826 3'AG 161135826 Downstream 36bp 12439 chr6 161135861 161135861 1 + G T STAD 161135862 + 161135842 161135882 41 CAGTGGAGAAAACTATGACGGCAAAATTTCCAAGACCATGT CAGTGGAGAAAACTATGACTGCAAAATTTCCAAGACCATGT < 41bp 0.515258512694491 0.820018164395619 NA NA prediction 0.609519303402257 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161135862 chr6:161135861 nonsynonymous SNV 0.792 4 20 hm7G_associated_SNPs_13037 0 0 0 0 2 PLG chr6:161135946 5'GT 161135946 Upstream 86bp 12440 chr16 1811270 1811270 1 + G T PAAD 1811271 + 1811251 1811291 41 GCCGTGAACCCAAAGAAGAGGCGGAGGATGTAAGCAGCTAT GCCGTGAACCCAAAGAAGATGCGGAGGATGTAAGCAGCTAT < 41bp 0.516308329446834 0.821037291366364 NA NA prediction 0.609457923839061 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1811271 chr16:1811270 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13038 0 0 1 0 1 MAPK8IP3 chr16:1811306 5'GT 1811306 Upstream 37bp 12441 chr7 150732998 150732998 1 + G T LUAD 150732999 + 150732979 150733019 41 CAATGGGCGTAGCAGACGAGGCCCTGGGCAATGTGCGGACT CAATGGGCGTAGCAGACGATGCCCTGGGCAATGTGCGGACT < 41bp 0.538228124345301 0.842955107048329 NA NA prediction 0.609453965406056 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150732999 chr7:150732998 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_13039 0 0 1 0 2 ABCB8 chr7:150732969 3'AG 150732969 Downstream 30bp 12442 chr7 150732998 150732998 1 + G T LUAD 150732999 + 150732979 150733019 41 CAATGGGCGTAGCAGACGAGGCCCTGGGCAATGTGCGGACT CAATGGGCGTAGCAGACGATGCCCTGGGCAATGTGCGGACT < 41bp 0.538228124345301 0.842955107048329 NA NA prediction 0.609453965406056 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150732999 chr7:150732998 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_13039 0 0 1 0 2 ABCB8 chr7:150733054 5'GT 150733054 Upstream 57bp 12443 chr12 52699164 52699164 1 + G T COAD 52699165 + 52699145 52699185 41 TCACCCGTAGCCGGGCTGAGGCCGAGTCCTGGTACCGCAGC TCACCCGTAGCCGGGCTGATGCCGAGTCCTGGTACCGCAGC < 41bp 0.51881702725293 0.823541275921319 NA NA prediction 0.609448497336778 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52699165 chr12:52699164 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_13040 0 0 0 0 1 KRT86 chr12:52699188 5'GT 52699188 Upstream 25bp 12444 chr2 242157277 242157277 1 + G T BRCA 242157278 + 242157258 242157298 41 CTGGTTCCACATCCTGGCGGGCCTCACGCACCTGGCGGTCA CTGGTTCCACATCCTGGCGTGCCTCACGCACCTGGCGGTCA < 41bp 0.49332479379263 0.804719711239604 NA NA prediction 0.609439422479207 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242157278 chr2:242157277 nonsynonymous SNV 0.263 1 20 hm7G_associated_SNPs_13041 0 0 0 0 1 ANO7 chr2:242157306 5'GT 242157306 Upstream 30bp 12445 chr19 12800595 12800595 1 - C A LUSC 12800594 - 12800574 12800614 41 CGTCTTCGCCAACCGCAACGGCTGCTTCCAGCTTATCCGGG CGTCTTCGCCAACCGCAACTGCTGCTTCCAGCTTATCCGGG < 41bp 0.521053405144997 0.825742763654736 NA NA prediction 0.609378717019478 Functional Gain - FBXW9 ENSG00000132004 CDS Human protein_coding chr19:12800594 chr19:12800595 nonsynonymous SNV 0.179 4 20 hm7G_associated_SNPs_13043 0 0 0 0 2 FBXW9 chr19:12800575 5'GT 12800575 Upstream 21bp 12446 chr19 12800595 12800595 1 - C A LUSC 12800594 - 12800574 12800614 41 CGTCTTCGCCAACCGCAACGGCTGCTTCCAGCTTATCCGGG CGTCTTCGCCAACCGCAACTGCTGCTTCCAGCTTATCCGGG < 41bp 0.521053405144997 0.825742763654736 NA NA prediction 0.609378717019478 Functional Gain - FBXW9 ENSG00000132004 CDS Human protein_coding chr19:12800594 chr19:12800595 nonsynonymous SNV 0.179 4 20 hm7G_associated_SNPs_13043 0 0 0 0 2 FBXW9 chr19:12800688 3'AG 12800688 Downstream 94bp 12447 chr1 201282303 201282303 1 + G T STAD 201282304 + 201282284 201282324 41 CCCTGGCCAGATCTACAATGGAACCCTCAAGCGGGAGCCTG CCCTGGCCAGATCTACAATTGAACCCTCAAGCGGGAGCCTG < 41bp 0.492742248904883 0.804678051131723 NA NA prediction 0.609356102263446 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201282304 chr1:201282303 stopgain 0.998 1 20 hm7G_associated_SNPs_13044 0 0 0 0 1 PKP1 chr1:201282294 3'AG 201282294 Downstream 10bp 12448 chr19 51650507 51650507 1 + G T LAML 51650508 + 51650488 51650528 41 TGCAGGAAGAAATCGGCAAGGCCAGCAGCGGACGTGGGAGA TGCAGGAAGAAATCGGCAATGCCAGCAGCGGACGTGGGAGA < 41bp 0.494653604816479 0.804674587667932 NA NA prediction 0.609349175335863 Functional Gain - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51650508 chr19:51650507 nonsynonymous SNV 0.030 3 20 hm7G_associated_SNPs_13045 0 0 0 0 1 SIGLEC7 chr19:51650574 5'GT 51650574 Upstream 68bp 12449 chr15 41148498 41148498 1 + G T SKCM 41148499 + 41148479 41148519 41 GATGTGTTTGGCCTGAGGCGGGAAATCCCCATTCCCAGCAC GATGTGTTTGGCCTGAGGCTGGAAATCCCCATTCCCAGCAC < 41bp 0.491619982949775 0.804656995056204 NA NA prediction 0.609313990112408 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41148499 chr15:41148498 nonsynonymous SNV 0.606 1 20 hm7G_associated_SNPs_13047 0 0 1 0 2 SPINT1 chr15:41148474 3'AG 41148474 Downstream 25bp 12450 chr15 41148498 41148498 1 + G T SKCM 41148499 + 41148479 41148519 41 GATGTGTTTGGCCTGAGGCGGGAAATCCCCATTCCCAGCAC GATGTGTTTGGCCTGAGGCTGGAAATCCCCATTCCCAGCAC < 41bp 0.491619982949775 0.804656995056204 NA NA prediction 0.609313990112408 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41148499 chr15:41148498 nonsynonymous SNV 0.606 1 20 hm7G_associated_SNPs_13047 0 0 1 0 2 SPINT1 chr15:41148521 5'GT 41148521 Upstream 24bp 12451 chr3 111797663 111797663 1 + G T LUSC 111797664 + 111797644 111797684 41 GCTCTGTGTTTCCACCTACGGGATCATCACTTCTCGGATGC GCTCTGTGTTTCCACCTACTGGATCATCACTTCTCGGATGC < 41bp 0.506924729068272 0.811578931986366 NA NA prediction 0.609308405836186 Functional Gain - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111797664 chr3:111797663 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_13048 0 0 0 0 2 TMPRSS7 chr3:111797589 3'AG 111797589 Downstream 75bp 12452 chr3 111797663 111797663 1 + G T LUSC 111797664 + 111797644 111797684 41 GCTCTGTGTTTCCACCTACGGGATCATCACTTCTCGGATGC GCTCTGTGTTTCCACCTACTGGATCATCACTTCTCGGATGC < 41bp 0.506924729068272 0.811578931986366 NA NA prediction 0.609308405836186 Functional Gain - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111797664 chr3:111797663 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_13048 0 0 0 0 2 TMPRSS7 chr3:111797725 5'GT 111797725 Upstream 63bp 12453 chr2 207454220 207454220 1 + G T ACC 207454221 + 207454201 207454241 41 GGGAAGGATGGAGACCGGTGGATTCAGTGCAGCAAACAGTG GGGAAGGATGGAGACCGGTTGATTCAGTGCAGCAAACAGTG < 41bp 0.494725261265836 0.804589888907037 NA NA prediction 0.609179777814074 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207454221 chr2:207454220 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13051 0 0 0 0 2 ADAM23 chr2:207454133 3'AG 207454133 Downstream 88bp 12454 chr2 207454220 207454220 1 + G T ACC 207454221 + 207454201 207454241 41 GGGAAGGATGGAGACCGGTGGATTCAGTGCAGCAAACAGTG GGGAAGGATGGAGACCGGTTGATTCAGTGCAGCAAACAGTG < 41bp 0.494725261265836 0.804589888907037 NA NA prediction 0.609179777814074 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207454221 chr2:207454220 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13051 0 0 0 0 2 ADAM23 chr2:207454238 5'GT 207454238 Upstream 19bp 12455 chr20 43629850 43629850 1 + G T COAD 43629851 + 43629831 43629871 41 CACGATGGTTCGAGCAGTGGGTGATGAGATGGGCACTGTCC CACGATGGTTCGAGCAGTGTGTGATGAGATGGGCACTGTCC < 41bp 0.502989133717551 0.807561826537239 NA NA prediction 0.609145385639374 Functional Gain - STK4 ENSG00000101109 CDS Human protein_coding chr20:43629851 chr20:43629850 nonsynonymous SNV 0.981 1 20 hm7G_associated_SNPs_13052 0 0 1 0 1 STK4 chr20:43629808 3'AG 43629808 Downstream 43bp 12456 chr12 56965535 56965535 1 + G T UCEC 56965536 + 56965516 56965556 41 CAAACCTCCCACTGTCAATGGATGAGCAGGAACTGGAGGGG CAAACCTCCCACTGTCAATTGATGAGCAGGAACTGGAGGGG < 41bp 0.51892511199987 0.823493260328162 NA NA prediction 0.609136296656584 Functional Gain - RBMS2 ENSG00000076067 CDS Human protein_coding chr12:56965536 chr12:56965535 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13053 0 0 0 0 1 RBMS2 chr12:56965482 3'AG 56965482 Downstream 54bp 12457 chr2 69046400 69046400 1 + G T LUSC 69046401 + 69046381 69046421 41 CCCGAAGCTCTGTAGGCTGGGATGCCACTGAAGACCTCCGA CCCGAAGCTCTGTAGGCTGTGATGCCACTGAAGACCTCCGA < 41bp 0.520882455497256 0.825447605554255 NA NA prediction 0.609130300113996 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046401 chr2:69046400 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13054 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 52bp 12458 chr1 15767038 15767038 1 + G T LUAD 15767039 + 15767019 15767059 41 TGGAGGCATACGTGTGGCGGGACTTTGATTGCTAGCAACTT TGGAGGCATACGTGTGGCGTGACTTTGATTGCTAGCAACTT < 41bp 0.486179933941875 0.804536263283655 NA NA prediction 0.60907252656731 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15767039 chr1:15767038 nonsynonymous SNV 0.010 5 20 hm7G_associated_SNPs_13055 0 0 0 0 2 CTRC chr1:15766989 3'AG 15766989 Downstream 50bp 12459 chr1 15767038 15767038 1 + G T LUAD 15767039 + 15767019 15767059 41 TGGAGGCATACGTGTGGCGGGACTTTGATTGCTAGCAACTT TGGAGGCATACGTGTGGCGTGACTTTGATTGCTAGCAACTT < 41bp 0.486179933941875 0.804536263283655 NA NA prediction 0.60907252656731 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15767039 chr1:15767038 nonsynonymous SNV 0.010 5 20 hm7G_associated_SNPs_13055 0 0 0 0 2 CTRC chr1:15767086 5'GT 15767086 Upstream 49bp 12460 chr14 74426204 74426204 1 + G T rs150313058 74426205 + 74426185 74426225 41 TGGATGAGGAAAAATTTGTGGATGCCGTTAACTCTGCCTTT TGGATGAGGAAAAATTTGTTGATGCCGTTAACTCTGCCTTT < 41bp 0.494538701788876 0.804528981124512 NA NA prediction 0.609057962249024 Functional Gain - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74426205 chr14:74426204 synonymous SNV . 0 20 hm7G_associated_SNPs_13056 0 0 1 0 2 COQ6 chr14:74426118 3'AG 74426118 Downstream 87bp 12461 chr14 74426204 74426204 1 + G T rs150313058 74426205 + 74426185 74426225 41 TGGATGAGGAAAAATTTGTGGATGCCGTTAACTCTGCCTTT TGGATGAGGAAAAATTTGTTGATGCCGTTAACTCTGCCTTT < 41bp 0.494538701788876 0.804528981124512 NA NA prediction 0.609057962249024 Functional Gain - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74426205 chr14:74426204 synonymous SNV . 0 20 hm7G_associated_SNPs_13056 0 0 1 0 2 COQ6 chr14:74426225 5'GT 74426225 Upstream 22bp 12462 chr7 8110646 8110646 1 + G T COAD 8110647 + 8110627 8110667 41 CTCAGACTCCTTCTGTCCAGGAGCGCAGCAGTAGCTGCAGC CTCAGACTCCTTCTGTCCATGAGCGCAGCAGTAGCTGCAGC < 41bp 0.491150668885038 0.804508090658058 NA NA prediction 0.609016181316116 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8110647 chr7:8110646 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_13057 0 0 0 0 1 GLCCI1 chr7:8110551 3'AG 8110551 Downstream 96bp 12463 chr11 46394044 46394044 1 + G T HNSC 46394045 + 46394025 46394065 41 AGTCTTCGACCTGAGCCAGGGAGGGCCCAAGGAGGCGTAAG AGTCTTCGACCTGAGCCAGTGAGGGCCCAAGGAGGCGTAAG < 41bp 0.494370815392352 0.804487334612413 NA NA prediction 0.608974669224826 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394045 chr11:46394044 stopgain 0.999 1 20 hm7G_associated_SNPs_13058 0 0 1 0 1 DGKZ chr11:46394060 5'GT 46394060 Upstream 17bp 12464 chr19 10570339 10570339 1 + G T COAD 10570340 + 10570320 10570360 41 CATACATGCTGACGCTGGAGGATCACTACCACGCTGACGTG CATACATGCTGACGCTGGATGATCACTACCACGCTGACGTG < 41bp 0.530304472729406 0.834759686601174 NA NA prediction 0.608910427743536 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10570340 chr19:10570339 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13059 0 0 0 0 2 PDE4A chr19:10570271 3'AG 10570271 Downstream 69bp 12465 chr19 10570339 10570339 1 + G T COAD 10570340 + 10570320 10570360 41 CATACATGCTGACGCTGGAGGATCACTACCACGCTGACGTG CATACATGCTGACGCTGGATGATCACTACCACGCTGACGTG < 41bp 0.530304472729406 0.834759686601174 NA NA prediction 0.608910427743536 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10570340 chr19:10570339 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13059 0 0 0 0 2 PDE4A chr19:10570435 5'GT 10570435 Upstream 97bp 12466 chr4 1800988 1800988 1 + G T LUSC 1800989 + 1800969 1801009 41 TCTTCCCCACAGAAGTCCCGGGCCCAGAGCCCGGCCAGCAG TCTTCCCCACAGAAGTCCCTGGCCCAGAGCCCGGCCAGCAG < 41bp 0.51752811847854 0.821975179277203 NA NA prediction 0.608894121597327 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1800989 chr4:1800988 synonymous SNV . 0 20 hm7G_associated_SNPs_13060 0 0 1 0 1 FGFR3 chr4:1800981 3'AG 1800981 Downstream 8bp 12467 chr17 15609718 15609718 1 + G T GBM 15609719 + 15609699 15609739 41 AGGAAACAGTGACATTCAAGGATGTGGCCATGGACTTTACA AGGAAACAGTGACATTCAATGATGTGGCCATGGACTTTACA < 41bp 0.50132032120959 0.805759614939204 NA NA prediction 0.608878587459229 Functional Gain - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15609719 chr17:15609718 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13061 0 0 1 0 2 ZNF286A chr17:15609701 3'AG 15609701 Downstream 18bp 12468 chr17 15609718 15609718 1 + G T GBM 15609719 + 15609699 15609739 41 AGGAAACAGTGACATTCAAGGATGTGGCCATGGACTTTACA AGGAAACAGTGACATTCAATGATGTGGCCATGGACTTTACA < 41bp 0.50132032120959 0.805759614939204 NA NA prediction 0.608878587459229 Functional Gain - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15609719 chr17:15609718 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13061 0 0 1 0 2 ZNF286A chr17:15609815 5'GT 15609815 Upstream 98bp 12469 chr17 4722429 4722429 1 + G T STAD 4722430 + 4722410 4722450 41 CTGCGGGCTTCGTACACACGGAGAGCTGGGCGGGCACCCCG CTGCGGGCTTCGTACACACTGAGAGCTGGGCGGGCACCCCG < 41bp 0.536666594616167 0.841103012923692 NA NA prediction 0.60887283661505 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4722430 chr17:4722429 stopgain 0.440 1 20 hm7G_associated_SNPs_13064 0 0 0 0 2 PLD2 chr17:4722379 3'AG 4722379 Downstream 51bp 12470 chr17 4722429 4722429 1 + G T STAD 4722430 + 4722410 4722450 41 CTGCGGGCTTCGTACACACGGAGAGCTGGGCGGGCACCCCG CTGCGGGCTTCGTACACACTGAGAGCTGGGCGGGCACCCCG < 41bp 0.536666594616167 0.841103012923692 NA NA prediction 0.60887283661505 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4722430 chr17:4722429 stopgain 0.440 1 20 hm7G_associated_SNPs_13064 0 0 0 0 2 PLD2 chr17:4722513 5'GT 4722513 Upstream 85bp 12471 chr7 150747315 150747315 1 + G T UCEC 150747316 + 150747296 150747336 41 TGCTGGACGTGCAGCAGGAGGAATATCTACCTGTGTGGAGG TGCTGGACGTGCAGCAGGATGAATATCTACCTGTGTGGAGG < 41bp 0.525016887024561 0.829441142525717 NA NA prediction 0.608848511002312 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150747316 chr7:150747315 nonsynonymous SNV 0.980 0 20 hm7G_associated_SNPs_13065 0 0 0 1 1 ASIC3 chr7:150747343 5'GT 150747343 Upstream 29bp 12472 chr17 72340420 72340420 1 + G T BLCA 72340421 + 72340401 72340441 41 CTGGGCTACCTGGAGCTGCGGGAGGACTCTAAGGGGGTGAT CTGGGCTACCTGGAGCTGCTGGAGGACTCTAAGGGGGTGAT < 41bp 0.485944135922918 0.804404099414229 NA NA prediction 0.608808198828458 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72340421 chr17:72340420 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_13066 0 0 0 0 1 KIF19 chr17:72340362 3'AG 72340362 Downstream 59bp 12473 chr6 84644421 84644421 1 + G T UCEC 84644422 + 84644402 84644442 41 TCATCTTCAAGTGCCCATTGGGCAACATGTTTACCTCAAGC TCATCTTCAAGTGCCCATTTGGCAACATGTTTACCTCAAGC < 41bp 0.499972864116929 0.804402301345162 NA NA prediction 0.608804602690324 Functional Gain - CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84644422 chr6:84644421 nonsynonymous SNV 0.899 5 20 hm7G_associated_SNPs_13067 0 0 1 0 1 CYB5R4 chr6:84644454 5'GT 84644454 Upstream 34bp 12474 chr10 115973781 115973781 1 + G T LUSC 115973782 + 115973762 115973802 41 AATCCATTGGAGTGGACATGGGTTGAACTTGGTGTTGACCA AATCCATTGGAGTGGACATTGGTTGAACTTGGTGTTGACCA < 41bp 0.509004661488945 0.813403035073979 NA NA prediction 0.608796747170068 Functional Gain - TDRD1 ENSG00000095627 CDS Human protein_coding chr10:115973782 chr10:115973781 nonsynonymous SNV 0.787 2 20 hm7G_associated_SNPs_13068 0 0 0 0 2 TDRD1 chr10:115973736 3'AG 115973736 Downstream 46bp 12475 chr10 115973781 115973781 1 + G T LUSC 115973782 + 115973762 115973802 41 AATCCATTGGAGTGGACATGGGTTGAACTTGGTGTTGACCA AATCCATTGGAGTGGACATTGGTTGAACTTGGTGTTGACCA < 41bp 0.509004661488945 0.813403035073979 NA NA prediction 0.608796747170068 Functional Gain - TDRD1 ENSG00000095627 CDS Human protein_coding chr10:115973782 chr10:115973781 nonsynonymous SNV 0.787 2 20 hm7G_associated_SNPs_13068 0 0 0 0 2 TDRD1 chr10:115973873 5'GT 115973873 Upstream 93bp 12476 chr6 168442788 168442788 1 + G T UCEC 168442789 + 168442769 168442809 41 GGCATGCGGAGCAGGTGCAGGCTCGACTACAGCTCGTGGAC GGCATGCGGAGCAGGTGCATGCTCGACTACAGCTCGTGGAC < 41bp 0.529258447486013 0.833643541595039 NA NA prediction 0.608770188218051 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168442789 chr6:168442788 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_13069 0 0 0 0 1 KIF25 chr6:168442831 5'GT 168442831 Upstream 44bp 12477 chr9 2077724 2077724 1 + G T UCEC 2077725 + 2077705 2077745 41 GCTCATGCCATCTCGGAGAGGGTGGAGAAACAGTCTGCCCT GCTCATGCCATCTCGGAGATGGTGGAGAAACAGTCTGCCCT < 41bp 0.489491592516918 0.804359072612702 NA NA prediction 0.608718145225404 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2077725 chr9:2077724 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_13070 0 0 0 0 2 SMARCA2 chr9:2077629 3'AG 2077629 Downstream 96bp 12478 chr9 2077724 2077724 1 + G T UCEC 2077725 + 2077705 2077745 41 GCTCATGCCATCTCGGAGAGGGTGGAGAAACAGTCTGCCCT GCTCATGCCATCTCGGAGATGGTGGAGAAACAGTCTGCCCT < 41bp 0.489491592516918 0.804359072612702 NA NA prediction 0.608718145225404 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2077725 chr9:2077724 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_13070 0 0 0 0 2 SMARCA2 chr9:2077776 5'GT 2077776 Upstream 53bp 12479 chr7 129989841 129989841 1 + G T LUSC 129989842 + 129989822 129989862 41 TTCTGGCGTGGCCCAGCCAGGCCCAGCCTCCCTGTGGATAT TTCTGGCGTGGCCCAGCCATGCCCAGCCTCCCTGTGGATAT < 41bp 0.514448903540839 0.818791311147605 NA NA prediction 0.608684815213532 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:129989842 chr7:129989841 nonsynonymous SNV 0.963 1 20 hm7G_associated_SNPs_13072 0 0 0 0 1 CPA5 chr7:129989816 3'AG 129989816 Downstream 26bp 12480 chr11 65417935 65417935 1 + G T GBM 65417936 + 65417916 65417956 41 CCATGCTCAGGAAGCTGCAGGAGGACCTGCAGAAGGTGAGG CCATGCTCAGGAAGCTGCATGAGGACCTGCAGAAGGTGAGG < 41bp 0.517697607734403 0.822030452297274 NA NA prediction 0.608665689125742 Functional Gain - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65417936 chr11:65417935 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_13073 0 0 1 0 2 SIPA1 chr11:65417872 3'AG 65417872 Downstream 64bp 12481 chr11 65417935 65417935 1 + G T GBM 65417936 + 65417916 65417956 41 CCATGCTCAGGAAGCTGCAGGAGGACCTGCAGAAGGTGAGG CCATGCTCAGGAAGCTGCATGAGGACCTGCAGAAGGTGAGG < 41bp 0.517697607734403 0.822030452297274 NA NA prediction 0.608665689125742 Functional Gain - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65417936 chr11:65417935 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_13073 0 0 1 0 2 SIPA1 chr11:65417950 5'GT 65417950 Upstream 16bp 12482 chr2 33745656 33745656 1 + G T LAML 33745657 + 33745637 33745677 41 TTCCTGCAGAGTTTAATTTGGATCTTGGTTTGATTCGTATG TTCCTGCAGAGTTTAATTTTGATCTTGGTTTGATTCGTATG < 41bp 0.496560401169918 0.804330448520322 NA NA prediction 0.608660897040644 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33745657 chr2:33745656 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13074 0 0 0 0 2 RASGRP3 chr2:33745620 3'AG 33745620 Downstream 37bp 12483 chr2 33745656 33745656 1 + G T LAML 33745657 + 33745637 33745677 41 TTCCTGCAGAGTTTAATTTGGATCTTGGTTTGATTCGTATG TTCCTGCAGAGTTTAATTTTGATCTTGGTTTGATTCGTATG < 41bp 0.496560401169918 0.804330448520322 NA NA prediction 0.608660897040644 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33745657 chr2:33745656 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13074 0 0 0 0 2 RASGRP3 chr2:33745751 5'GT 33745751 Upstream 96bp 12484 chr19 18085960 18085960 1 + G T OV 18085961 + 18085941 18085981 41 TCTCCACGGCCATCCTGCTGGGTCTCGTTGTCCTCTACCAT TCTCCACGGCCATCCTGCTTGGTCTCGTTGTCCTCTACCAT < 41bp 0.519892558255212 0.824203625020146 NA NA prediction 0.608622133529868 Functional Gain - KCNN1 ENSG00000105642 CDS Human protein_coding chr19:18085961 chr19:18085960 synonymous SNV . 0 20 hm7G_associated_SNPs_13075 0 0 0 0 2 KCNN1 chr19:18085901 3'AG 18085901 Downstream 60bp 12485 chr19 18085960 18085960 1 + G T OV 18085961 + 18085941 18085981 41 TCTCCACGGCCATCCTGCTGGGTCTCGTTGTCCTCTACCAT TCTCCACGGCCATCCTGCTTGGTCTCGTTGTCCTCTACCAT < 41bp 0.519892558255212 0.824203625020146 NA NA prediction 0.608622133529868 Functional Gain - KCNN1 ENSG00000105642 CDS Human protein_coding chr19:18085961 chr19:18085960 synonymous SNV . 0 20 hm7G_associated_SNPs_13075 0 0 0 0 2 KCNN1 chr19:18085996 5'GT 18085996 Upstream 37bp 12486 chr4 90830522 90830522 1 + G T LUAD 90830523 + 90830503 90830543 41 GGGAAAGGACCTTGTGGCTGGACCGGTGGATCCTGTCCTCA GGGAAAGGACCTTGTGGCTTGACCGGTGGATCCTGTCCTCA < 41bp 0.490028335921398 0.80430503787869 NA NA prediction 0.60861007575738 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90830523 chr4:90830522 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_13076 0 0 0 0 2 MMRN1 chr4:90830427 3'AG 90830427 Downstream 96bp 12487 chr4 90830522 90830522 1 + G T LUAD 90830523 + 90830503 90830543 41 GGGAAAGGACCTTGTGGCTGGACCGGTGGATCCTGTCCTCA GGGAAAGGACCTTGTGGCTTGACCGGTGGATCCTGTCCTCA < 41bp 0.490028335921398 0.80430503787869 NA NA prediction 0.60861007575738 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90830523 chr4:90830522 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_13076 0 0 0 0 2 MMRN1 chr4:90830546 5'GT 90830546 Upstream 25bp 12488 chr19 36348297 36348297 1 + G T LUAD 36348298 + 36348278 36348318 41 GGACCTGGTGGTGCTGCTGGGGGAGGAAGCCCGGCTGCCGT GGACCTGGTGGTGCTGCTGTGGGAGGAAGCCCGGCTGCCGT < 41bp 0.526178917312075 0.830466982600698 NA NA prediction 0.608576130577246 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36348298 chr19:36348297 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_13079 0 0 0 0 2 KIRREL2 chr19:36348247 3'AG 36348247 Downstream 51bp 12489 chr19 36348297 36348297 1 + G T LUAD 36348298 + 36348278 36348318 41 GGACCTGGTGGTGCTGCTGGGGGAGGAAGCCCGGCTGCCGT GGACCTGGTGGTGCTGCTGTGGGAGGAAGCCCGGCTGCCGT < 41bp 0.526178917312075 0.830466982600698 NA NA prediction 0.608576130577246 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36348298 chr19:36348297 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_13079 0 0 0 0 2 KIRREL2 chr19:36348396 5'GT 36348396 Upstream 100bp 12490 chrX 37664272 37664272 1 + G T UCEC 37664273 + 37664253 37664293 41 CTTCAGGATAGCGGTTGATGGGCCCTTTGGCACTGCCAGTG CTTCAGGATAGCGGTTGATTGGCCCTTTGGCACTGCCAGTG < 41bp 0.515105547812042 0.819384185393204 NA NA prediction 0.608557275162324 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37664273 chrX:37664272 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13080 0 0 0 0 1 CYBB chrX:37664259 3'AG 37664259 Downstream 14bp 12491 chr9 126134612 126134612 1 + G T LUAD 126134613 + 126134593 126134633 41 GTGTGAGGAGGTCCCTGATGGCTTTGTGTGTGAGTGTGTGT GTGTGAGGAGGTCCCTGATTGCTTTGTGTGTGAGTGTGTGT < 41bp 0.481631537743544 0.804264398391574 NA NA prediction 0.608528796783149 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126134613 chr9:126134612 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13081 0 0 0 0 1 CRB2 chr9:126134621 5'GT 126134621 Upstream 10bp 12492 chr17 40845347 40845347 1 + G T STAD 40845348 + 40845328 40845368 41 TAAGAGACGCCCCTTTGTGGGTTGCTTGAGGGCCATGCGTC TAAGAGACGCCCCTTTGTGTGTTGCTTGAGGGCCATGCGTC < 41bp 0.516549482426851 0.820768515718333 NA NA prediction 0.608438066582964 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40845348 chr17:40845347 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13083 0 0 0 0 1 CNTNAP1 chr17:40845315 3'AG 40845315 Downstream 33bp 12493 chr6 43139817 43139817 1 + G T UCEC 43139818 + 43139798 43139838 41 AGCCGGGTAAGAAGACCCGGGGCCGCGTGAAGATCAAGATG AGCCGGGTAAGAAGACCCGTGGCCGCGTGAAGATCAAGATG < 41bp 0.492786033212232 0.804213216049967 NA NA prediction 0.608426432099934 Functional Gain - SRF ENSG00000112658 CDS Human protein_coding chr6:43139818 chr6:43139817 synonymous SNV . 0 20 hm7G_associated_SNPs_13084 0 0 1 0 1 SRF chr6:43139907 5'GT 43139907 Upstream 91bp 12494 chr6 158487553 158487553 1 + G T LUSC 158487554 + 158487534 158487574 41 GCGGATCCGGATTGCTATGGGGACCTGGAACGTGAACGGAG GCGGATCCGGATTGCTATGTGGACCTGGAACGTGAACGGAG < 41bp 0.519857885669768 0.82406402966153 NA NA prediction 0.608412287983525 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158487554 chr6:158487553 nonsynonymous SNV 0.960 5 20 hm7G_associated_SNPs_13085 0 0 1 0 1 SYNJ2 chr6:158487476 3'AG 158487476 Downstream 78bp 12495 chr4 649750 649750 1 + G T LUAD 649751 + 649731 649771 41 CACCCTCAGCCGATCACTGGGCCCTGGCCAGCGGCCTTCCA CACCCTCAGCCGATCACTGTGCCCTGGCCAGCGGCCTTCCA < 41bp 0.468445016079767 0.804181840924663 NA NA prediction 0.608363681849326 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:649751 chr4:649750 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13086 0 0 0 0 2 PDE6B chr4:649729 3'AG 649729 Downstream 22bp 12496 chr4 649750 649750 1 + G T LUAD 649751 + 649731 649771 41 CACCCTCAGCCGATCACTGGGCCCTGGCCAGCGGCCTTCCA CACCCTCAGCCGATCACTGTGCCCTGGCCAGCGGCCTTCCA < 41bp 0.468445016079767 0.804181840924663 NA NA prediction 0.608363681849326 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:649751 chr4:649750 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13086 0 0 0 0 2 PDE6B chr4:649795 5'GT 649795 Upstream 46bp 12497 chr19 6183210 6183210 1 + G T UCEC 6183211 + 6183191 6183231 41 AAGCTTGGACATACCTATAGGCGAGTTGTATGGGTTGAGTG AAGCTTGGACATACCTATATGCGAGTTGTATGGGTTGAGTG < 41bp 0.497323788211917 0.804181142034681 NA NA prediction 0.608362284069362 Functional Gain - ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6183211 chr19:6183210 nonsynonymous SNV 0.564 0 20 hm7G_associated_SNPs_13087 0 0 0 0 1 ACSBG2 chr19:6183283 5'GT 6183283 Upstream 74bp 12498 chr1 148932887 148932887 1 + G T CESC 148932888 + 148932868 148932908 41 GGGAGACGGGTGAGGTACAGGCTCAGTCTGCGGCCAAGACT GGGAGACGGGTGAGGTACATGCTCAGTCTGCGGCCAAGACT < 41bp 0.501254593733644 0.805428014151933 NA NA prediction 0.608346840836577 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932888 chr1:148932887 . . 0 20 hm7G_associated_SNPs_13089 0 0 0 1 1 LOC645166 chr1:148932920 5'GT 148932920 Upstream 34bp 12499 chr21 45540608 45540608 1 + G T UCEC 45540609 + 45540589 45540629 41 TCGTCTCTGCAGGGGCGCAGGACTCCTTTGAGATTTTCGTG TCGTCTCTGCAGGGGCGCATGACTCCTTTGAGATTTTCGTG < 41bp 0.477853252094638 0.804167883582461 NA NA prediction 0.608335767164922 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45540609 chr21:45540608 nonsynonymous SNV 0.875 2 20 hm7G_associated_SNPs_13090 0 0 1 0 2 PWP2 chr21:45540512 3'AG 45540512 Downstream 97bp 12500 chr21 45540608 45540608 1 + G T UCEC 45540609 + 45540589 45540629 41 TCGTCTCTGCAGGGGCGCAGGACTCCTTTGAGATTTTCGTG TCGTCTCTGCAGGGGCGCATGACTCCTTTGAGATTTTCGTG < 41bp 0.477853252094638 0.804167883582461 NA NA prediction 0.608335767164922 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45540609 chr21:45540608 nonsynonymous SNV 0.875 2 20 hm7G_associated_SNPs_13090 0 0 1 0 2 PWP2 chr21:45540659 5'GT 45540659 Upstream 52bp 12501 chr19 4310514 4310514 1 + G T LGG 4310515 + 4310495 4310535 41 GGCTATCATTGAAAGCGAAGGTCAGTGACAACATGAGTCAC GGCTATCATTGAAAGCGAATGTCAGTGACAACATGAGTCAC < 41bp 0.515109806246414 0.819276316653151 NA NA prediction 0.608333020813474 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4310515 chr19:4310514 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_13091 0 0 0 0 1 FSD1 chr19:4310593 5'GT 4310593 Upstream 80bp 12502 chr19 49644750 49644750 1 + G T LUSC 49644751 + 49644731 49644771 41 TGACAGGCCCAGGAGACAAGGACCGAAGGAACAAGAGGAAG TGACAGGCCCAGGAGACAATGACCGAAGGAACAAGAGGAAG < 41bp 0.516692861413512 0.820829271121537 NA NA prediction 0.60827281941605 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644751 chr19:49644750 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13092 0 0 0 0 2 PPFIA3 chr19:49644677 3'AG 49644677 Downstream 74bp 12503 chr19 49644750 49644750 1 + G T LUSC 49644751 + 49644731 49644771 41 TGACAGGCCCAGGAGACAAGGACCGAAGGAACAAGAGGAAG TGACAGGCCCAGGAGACAATGACCGAAGGAACAAGAGGAAG < 41bp 0.516692861413512 0.820829271121537 NA NA prediction 0.60827281941605 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49644751 chr19:49644750 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13092 0 0 0 0 2 PPFIA3 chr19:49644770 5'GT 49644770 Upstream 21bp 12504 chr1 44134861 44134861 1 + G T UCEC 44134862 + 44134842 44134882 41 GTGAGCTCTTCCCCAAGGAGGATCTGAGTTCTGAGCAGTAT GTGAGCTCTTCCCCAAGGATGATCTGAGTTCTGAGCAGTAT < 41bp 0.513760463560623 0.81788593778922 NA NA prediction 0.608250948457195 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134862 chr1:44134861 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_13093 0 0 1 0 1 KDM4A chr1:44134771 3'AG 44134771 Downstream 91bp 12505 chr17 73484022 73484022 1 + G T SKCM 73484023 + 73484003 73484043 41 TTCCCCTCAGATGCCCTCAGGGATGGCAGGGAGATCCAGTG TTCCCCTCAGATGCCCTCATGGATGGCAGGGAGATCCAGTG < 41bp 0.528484147586504 0.832604873865892 NA NA prediction 0.608241452558775 Functional Gain - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73484023 chr17:73484022 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_13094 0 0 1 0 1 TMEM94 chr17:73484013 3'AG 73484013 Downstream 10bp 12506 chr4 110448546 110448546 1 + G T LUAD 110448547 + 110448527 110448567 41 ACTAGCAGATGTATATGCGGGAGTGGATGTACAAGCTGCCA ACTAGCAGATGTATATGCGTGAGTGGATGTACAAGCTGCCA < 41bp 0.50830249493943 0.812422038838141 NA NA prediction 0.608239087797421 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110448547 chr4:110448546 stopgain 0.957 1 20 hm7G_associated_SNPs_13095 0 0 1 0 2 SEC24B chr4:110448478 3'AG 110448478 Downstream 69bp 12507 chr4 110448546 110448546 1 + G T LUAD 110448547 + 110448527 110448567 41 ACTAGCAGATGTATATGCGGGAGTGGATGTACAAGCTGCCA ACTAGCAGATGTATATGCGTGAGTGGATGTACAAGCTGCCA < 41bp 0.50830249493943 0.812422038838141 NA NA prediction 0.608239087797421 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110448547 chr4:110448546 stopgain 0.957 1 20 hm7G_associated_SNPs_13095 0 0 1 0 2 SEC24B chr4:110448588 5'GT 110448588 Upstream 43bp 12508 chr16 1262130 1262130 1 + G T GBM 1262131 + 1262111 1262151 41 CTGCGGCGCCTAGAGAGGAGGCGCAGGAGTAAGGCGCTCCC CTGCGGCGCCTAGAGAGGATGCGCAGGAGTAAGGCGCTCCC < 41bp 0.506546464270432 0.810663449211966 NA NA prediction 0.608233969883067 Functional Gain - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1262131 chr16:1262130 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_13096 0 0 0 0 2 CACNA1H chr16:1262138 5'GT 1262138 Upstream 9bp 12509 chr16 1262130 1262130 1 + G T GBM 1262131 + 1262111 1262151 41 CTGCGGCGCCTAGAGAGGAGGCGCAGGAGTAAGGCGCTCCC CTGCGGCGCCTAGAGAGGATGCGCAGGAGTAAGGCGCTCCC < 41bp 0.506546464270432 0.810663449211966 NA NA prediction 0.608233969883067 Functional Gain - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1262131 chr16:1262130 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_13096 0 0 0 0 2 CACNA1H chr16:1262171 5'GT 1262171 Upstream 42bp 12510 chr14 24900107 24900107 1 + G T PRAD 24900108 + 24900088 24900128 41 ACATCTGGCTGCAGCTGGAGGGCCCCAAGGAAAACGCCAGC ACATCTGGCTGCAGCTGGATGGCCCCAAGGAAAACGCCAGC < 41bp 0.52831192653335 0.832414936614321 NA NA prediction 0.608206020161941 Functional Gain - KHNYN ENSG00000100441 CDS Human protein_coding chr14:24900108 chr14:24900107 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13097 0 0 1 0 1 KHNYN chr14:24900137 5'GT 24900137 Upstream 31bp 12511 chr9 133488373 133488373 1 + G T LUSC 133488374 + 133488354 133488394 41 GGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTGGTTG GGAGGTGAGCAGATTTCACTGATTCAAGCAGAATCTGGTTG < 41bp 0.515885734553136 0.819988020830833 NA NA prediction 0.608204572555394 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133488374 chr9:133488373 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13098 0 0 1 0 2 FUBP3 chr9:133488343 3'AG 133488343 Downstream 31bp 12512 chr9 133488373 133488373 1 + G T LUSC 133488374 + 133488354 133488394 41 GGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTGGTTG GGAGGTGAGCAGATTTCACTGATTCAAGCAGAATCTGGTTG < 41bp 0.515885734553136 0.819988020830833 NA NA prediction 0.608204572555394 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133488374 chr9:133488373 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13098 0 0 1 0 2 FUBP3 chr9:133488414 5'GT 133488414 Upstream 42bp 12513 chr19 34811012 34811012 1 + G T UCEC 34811013 + 34810993 34811033 41 CTGTGCGGTCCTGGCGGGGGGCTGCTGAGGTAACCCTGGCT CTGTGCGGTCCTGGCGGGGTGCTGCTGAGGTAACCCTGGCT < 41bp 0.5303066099491 0.834404604709984 NA NA prediction 0.608195989521767 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34811013 chr19:34811012 synonymous SNV . 0 20 hm7G_associated_SNPs_13099 0 0 1 0 1 KIAA0355 chr19:34811021 5'GT 34811021 Upstream 10bp 12514 chr2 234851343 234851343 1 + G T LUAD 234851344 + 234851324 234851364 41 GCCATTGGCATAGCAGCTTGGGGCATGGTCTCCAACCGGGA GCCATTGGCATAGCAGCTTTGGGCATGGTCTCCAACCGGGA < 41bp 0.524850110320834 0.828943053163899 NA NA prediction 0.608185885686129 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234851344 chr2:234851343 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_13100 0 0 0 0 1 TRPM8 chr2:234851392 5'GT 234851392 Upstream 50bp 12515 chrX 18797263 18797263 1 + G T LIHC 18797264 + 18797244 18797284 41 TGACCTGCACTTGAACAGAGGGAACCACGAAGATTTTATGA TGACCTGCACTTGAACAGATGGAACCACGAAGATTTTATGA < 41bp 0.501605542371362 0.805694846075235 NA NA prediction 0.608178607407746 Functional Gain - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18797264 chrX:18797263 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13101 0 0 0 0 1 PPEF1 chrX:18797294 5'GT 18797294 Upstream 32bp 12516 chrX 65427069 65427069 1 + G T LUSC 65427070 + 65427050 65427090 41 TTCCTGAGCAACAAGGATGGGCTCCTGGGTTCCAGATACAA TTCCTGAGCAACAAGGATGTGCTCCTGGGTTCCAGATACAA < 41bp 0.511259965264516 0.815340651354939 NA NA prediction 0.608161372180846 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65427070 chrX:65427069 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_13102 0 0 1 0 1 HEPH chrX:65427037 3'AG 65427037 Downstream 33bp 12517 chr19 17835910 17835910 1 + G T LUSC 17835911 + 17835891 17835931 41 AAGCTACTGGTGTTGGCTGGGCCCTGCCTGGAGGAGACGGG AAGCTACTGGTGTTGGCTGTGCCCTGCCTGGAGGAGACGGG < 41bp 0.535384580721309 0.839442608647719 NA NA prediction 0.608116055852822 Functional Gain - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17835911 chr19:17835910 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13103 0 0 1 0 2 MAP1S chr19:17835858 3'AG 17835858 Downstream 53bp 12518 chr19 17835910 17835910 1 + G T LUSC 17835911 + 17835891 17835931 41 AAGCTACTGGTGTTGGCTGGGCCCTGCCTGGAGGAGACGGG AAGCTACTGGTGTTGGCTGTGCCCTGCCTGGAGGAGACGGG < 41bp 0.535384580721309 0.839442608647719 NA NA prediction 0.608116055852822 Functional Gain - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17835911 chr19:17835910 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13103 0 0 1 0 2 MAP1S chr19:17835998 5'GT 17835998 Upstream 89bp 12519 chr12 50037727 50037727 1 + G T rs552348674 50037728 + 50037708 50037748 41 AAGAACAGGACAAGGACAGGGAGCTCCAACAGGCAGAGCTC AAGAACAGGACAAGGACAGTGAGCTCCAACAGGCAGAGCTC < 41bp 0.515444130607311 0.819494482471032 NA NA prediction 0.608100703727442 Functional Gain - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50037728 chr12:50037727 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_13105 0 0 0 0 2 PRPF40B chr12:50037644 3'AG 50037644 Downstream 84bp 12520 chr12 50037727 50037727 1 + G T rs552348674 50037728 + 50037708 50037748 41 AAGAACAGGACAAGGACAGGGAGCTCCAACAGGCAGAGCTC AAGAACAGGACAAGGACAGTGAGCTCCAACAGGCAGAGCTC < 41bp 0.515444130607311 0.819494482471032 NA NA prediction 0.608100703727442 Functional Gain - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50037728 chr12:50037727 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_13105 0 0 0 0 2 PRPF40B chr12:50037787 5'GT 50037787 Upstream 61bp 12521 chr17 73045324 73045324 1 + G T COAD 73045325 + 73045305 73045345 41 TGGTTGGCAGGATGAGACAGGAGCCTATCTGATTGACAGGG TGGTTGGCAGGATGAGACATGAGCCTATCTGATTGACAGGG < 41bp 0.515376288119134 0.819382614728533 NA NA prediction 0.608012653218798 Functional Gain - KCTD2 ENSG00000180901 CDS Human protein_coding chr17:73045325 chr17:73045324 stopgain 0.941 1 20 hm7G_associated_SNPs_13108 0 0 1 1 1 KCTD2 chr17:73045315 3'AG 73045315 Downstream 10bp 12522 chr15 22925788 22925788 1 + G T BLCA 22925789 + 22925769 22925809 41 TGTTCCAGCCCAGGATGGCGGCCCAGGTGACTCTGGAGGAC TGTTCCAGCCCAGGATGGCTGCCCAGGTGACTCTGGAGGAC < 41bp 0.521181028747912 0.825182272483889 NA NA prediction 0.608002487471956 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22925789 chr15:22925788 synonymous SNV . 0 20 hm7G_associated_SNPs_13109 0 0 1 0 1 CYFIP1 chr15:22925777 3'AG 22925777 Downstream 12bp 12523 chr11 117059485 117059485 1 + G T UCEC 117059486 + 117059466 117059506 41 CCATGAGCTCTGTGGAGGAGGATGACTACGACACATTGACC CCATGAGCTCTGTGGAGGATGATGACTACGACACATTGACC < 41bp 0.478809248317399 0.803999374543549 NA NA prediction 0.607998749087099 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117059486 chr11:117059485 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_13110 0 0 1 0 3 SIDT2 chr11:117059424 3'AG 117059424 Downstream 62bp 12524 chr11 117059485 117059485 1 + G T UCEC 117059486 + 117059466 117059506 41 CCATGAGCTCTGTGGAGGAGGATGACTACGACACATTGACC CCATGAGCTCTGTGGAGGATGATGACTACGACACATTGACC < 41bp 0.478809248317399 0.803999374543549 NA NA prediction 0.607998749087099 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117059486 chr11:117059485 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_13110 0 0 1 0 3 SIDT2 chr11:117059445 3'AG 117059445 Downstream 41bp 12525 chr11 117059485 117059485 1 + G T UCEC 117059486 + 117059466 117059506 41 CCATGAGCTCTGTGGAGGAGGATGACTACGACACATTGACC CCATGAGCTCTGTGGAGGATGATGACTACGACACATTGACC < 41bp 0.478809248317399 0.803999374543549 NA NA prediction 0.607998749087099 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117059486 chr11:117059485 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_13110 0 0 1 0 3 SIDT2 chr11:117059542 5'GT 117059542 Upstream 58bp 12526 chr17 9764515 9764515 1 + G T PAAD 9764516 + 9764496 9764536 41 TGCACACCTGGAGAACACAGGGTAGGTAATTCACCAGGTGT TGCACACCTGGAGAACACATGGTAGGTAATTCACCAGGTGT < 41bp 0.499737980159381 0.803974764812961 NA NA prediction 0.607949529625922 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9764516 chr17:9764515 nonsynonymous SNV 0.811 3 20 hm7G_associated_SNPs_13113 0 0 0 0 1 GLP2R chr17:9764456 3'AG 9764456 Downstream 60bp 12527 chr3 49735535 49735535 1 + G T LUAD 49735536 + 49735516 49735556 41 CCAGGGGCTCATGCAGATCGGCTGGTGCACCATCAGCTGCC CCAGGGGCTCATGCAGATCTGCTGGTGCACCATCAGCTGCC < 41bp 0.481687603407674 0.803971532682434 NA NA prediction 0.607943065364869 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49735536 chr3:49735535 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_13114 0 0 1 0 2 RNF123 chr3:49735485 3'AG 49735485 Downstream 51bp 12528 chr3 49735535 49735535 1 + G T LUAD 49735536 + 49735516 49735556 41 CCAGGGGCTCATGCAGATCGGCTGGTGCACCATCAGCTGCC CCAGGGGCTCATGCAGATCTGCTGGTGCACCATCAGCTGCC < 41bp 0.481687603407674 0.803971532682434 NA NA prediction 0.607943065364869 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49735536 chr3:49735535 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_13114 0 0 1 0 2 RNF123 chr3:49735570 5'GT 49735570 Upstream 36bp 12529 chr18 2890656 2890656 1 + G T BLCA 2890657 + 2890637 2890677 41 ATCCAAAAGAGGGGCCTCAGGAACTTCAGGAAAAGAAGATA ATCCAAAAGAGGGGCCTCATGAACTTCAGGAAAAGAAGATA < 41bp 0.494244425359325 0.80396723327975 NA NA prediction 0.607934466559499 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2890657 chr18:2890656 nonsynonymous SNV 0.282 1 20 hm7G_associated_SNPs_13115 0 0 0 0 1 EMILIN2 chr18:2890559 3'AG 2890559 Downstream 98bp 12530 chrX 2990163 2990163 1 + G T LUAD 2990164 + 2990144 2990184 41 CTAATATTGTCCTAATCATGGTTGATGACCTGGGTATTGGA CTAATATTGTCCTAATCATTGTTGATGACCTGGGTATTGGA < 41bp 0.494450523473867 0.803961765358593 NA NA prediction 0.607923530717186 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:2990164 chrX:2990163 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_13116 0 0 0 0 2 ARSF chrX:2990067 3'AG 2990067 Downstream 97bp 12531 chrX 2990163 2990163 1 + G T LUAD 2990164 + 2990144 2990184 41 CTAATATTGTCCTAATCATGGTTGATGACCTGGGTATTGGA CTAATATTGTCCTAATCATTGTTGATGACCTGGGTATTGGA < 41bp 0.494450523473867 0.803961765358593 NA NA prediction 0.607923530717186 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:2990164 chrX:2990163 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_13116 0 0 0 0 2 ARSF chrX:2990216 5'GT 2990216 Upstream 54bp 12532 chr17 14248435 14248435 1 + G T LUAD 14248436 + 14248416 14248456 41 AGGCCCCTGCGCGCATCTCGGCCATGTCCAAGGACACCAAG AGGCCCCTGCGCGCATCTCTGCCATGTCCAAGGACACCAAG < 41bp 0.510002887447572 0.813961866013781 NA NA prediction 0.607917957132418 Functional Gain - HS3ST3B1 ENSG00000125430 CDS Human protein_coding chr17:14248436 chr17:14248435 synonymous SNV . 0 20 hm7G_associated_SNPs_13117 0 0 0 0 1 HS3ST3B1 chr17:14248345 3'AG 14248345 Downstream 91bp 12533 chr20 49196426 49196426 1 + G T KIRC 49196427 + 49196407 49196447 41 CCCCATCAAGGAAGAAAAAGGAAGCCCCTTAAATGCCGCAC CCCCATCAAGGAAGAAAAATGAAGCCCCTTAAATGCCGCAC < 41bp 0.512645712846606 0.816586592073462 NA NA prediction 0.60788175845371 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49196427 chr20:49196426 stopgain 0.019 0 20 hm7G_associated_SNPs_13118 0 0 1 0 1 PTPN1 chr20:49196463 5'GT 49196463 Upstream 38bp 12534 chr1 162722905 162722905 1 + G T LUSC 162722906 + 162722886 162722926 41 TATATGCCGCTATCCTCTGGGCATGTCAGGAGGCCAGATTC TATATGCCGCTATCCTCTGTGCATGTCAGGAGGCCAGATTC < 41bp 0.523286617994961 0.827204638462841 NA NA prediction 0.607836040935761 Functional Gain - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162722906 chr1:162722905 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13121 0 0 0 0 2 DDR2 chr1:162722885 3'AG 162722885 Downstream 21bp 12535 chr1 162722905 162722905 1 + G T LUSC 162722906 + 162722886 162722926 41 TATATGCCGCTATCCTCTGGGCATGTCAGGAGGCCAGATTC TATATGCCGCTATCCTCTGTGCATGTCAGGAGGCCAGATTC < 41bp 0.523286617994961 0.827204638462841 NA NA prediction 0.607836040935761 Functional Gain - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162722906 chr1:162722905 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13121 0 0 0 0 2 DDR2 chr1:162722987 5'GT 162722987 Upstream 83bp 12536 chr17 79991327 79991327 1 + G T STAD 79991328 + 79991308 79991348 41 CCCTGCAGTGGTACCCGGAGGTGCGGCACCACTGCCCCCAC CCCTGCAGTGGTACCCGGATGTGCGGCACCACTGCCCCCAC < 41bp 0.508945195779906 0.812813128934272 NA NA prediction 0.607735866308732 Functional Gain - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79991328 chr17:79991327 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_13124 0 0 1 0 1 RAC3 chr17:79991316 3'AG 79991316 Downstream 12bp 12537 chr9 136513045 136513045 1 + G T STAD 136513046 + 136513026 136513066 41 CGCGGGGATCATGGAGCTGGGACTGGTGTACACGCCAGTGA CGCGGGGATCATGGAGCTGTGACTGGTGTACACGCCAGTGA < 41bp 0.527933176458158 0.831773322635036 NA NA prediction 0.607680292353756 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136513046 chr9:136513045 stopgain 0.997 1 20 hm7G_associated_SNPs_13126 0 0 0 0 2 DBH chr9:136512968 3'AG 136512968 Downstream 78bp 12538 chr9 136513045 136513045 1 + G T STAD 136513046 + 136513026 136513066 41 CGCGGGGATCATGGAGCTGGGACTGGTGTACACGCCAGTGA CGCGGGGATCATGGAGCTGTGACTGGTGTACACGCCAGTGA < 41bp 0.527933176458158 0.831773322635036 NA NA prediction 0.607680292353756 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136513046 chr9:136513045 stopgain 0.997 1 20 hm7G_associated_SNPs_13126 0 0 0 0 2 DBH chr9:136513134 5'GT 136513134 Upstream 90bp 12539 chr17 3559854 3559854 1 + G T CESC 3559855 + 3559835 3559875 41 CTACAGTGTATTCAACATCGGCCTCCTCTGGGTGCCCTACA CTACAGTGTATTCAACATCTGCCTCCTCTGGGTGCCCTACA < 41bp 0.521663238070957 0.825486457102642 NA NA prediction 0.60764643806337 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3559855 chr17:3559854 nonsynonymous SNV 0.483 5 20 hm7G_associated_SNPs_13127 0 0 1 0 1 CTNS chr17:3559880 5'GT 3559880 Upstream 27bp 12540 chr17 40613000 40613000 1 + G T UCEC 40613001 + 40612981 40613021 41 TTGTTGTGTCAGTGAATTAGGAGAACTTGGAAAGGTTCAGT TTGTTGTGTCAGTGAATTATGAGAACTTGGAAAGGTTCAGT < 41bp 0.501865258403609 0.805684705603605 NA NA prediction 0.607638894399994 Functional Gain - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40613001 chr17:40613000 stopgain 1.000 1 20 hm7G_associated_SNPs_13128 0 0 1 0 1 ATP6V0A1 chr17:40613029 5'GT 40613029 Upstream 30bp 12541 chr19 44341264 44341264 1 + G T LUSC 44341265 + 44341245 44341285 41 AGGAGGAGTGGGAATGCCTGGACCCTGCTCAGAGGGACTTG AGGAGGAGTGGGAATGCCTTGACCCTGCTCAGAGGGACTTG < 41bp 0.524751035490386 0.828569676153239 NA NA prediction 0.607637281325707 Functional Gain - ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44341265 chr19:44341264 synonymous SNV . 0 20 hm7G_associated_SNPs_13129 0 0 1 0 2 ZNF283 chr19:44341205 3'AG 44341205 Downstream 60bp 12542 chr19 44341264 44341264 1 + G T LUSC 44341265 + 44341245 44341285 41 AGGAGGAGTGGGAATGCCTGGACCCTGCTCAGAGGGACTTG AGGAGGAGTGGGAATGCCTTGACCCTGCTCAGAGGGACTTG < 41bp 0.524751035490386 0.828569676153239 NA NA prediction 0.607637281325707 Functional Gain - ZNF283 ENSG00000167637 CDS Human protein_coding chr19:44341265 chr19:44341264 synonymous SNV . 0 20 hm7G_associated_SNPs_13129 0 0 1 0 2 ZNF283 chr19:44341331 5'GT 44341331 Upstream 68bp 12543 chr1 44157956 44157956 1 + G T LIHC 44157957 + 44157937 44157977 41 TATGCTCATTACGAGGAGGGGCCCTGCAGAGAGCAAATGAT TATGCTCATTACGAGGAGGTGCCCTGCAGAGAGCAAATGAT < 41bp 0.504138921770398 0.807955777527905 NA NA prediction 0.607633711515014 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44157957 chr1:44157956 synonymous SNV . 0 20 hm7G_associated_SNPs_13130 0 0 1 0 2 KDM4A chr1:44157927 3'AG 44157927 Downstream 30bp 12544 chr1 44157956 44157956 1 + G T LIHC 44157957 + 44157937 44157977 41 TATGCTCATTACGAGGAGGGGCCCTGCAGAGAGCAAATGAT TATGCTCATTACGAGGAGGTGCCCTGCAGAGAGCAAATGAT < 41bp 0.504138921770398 0.807955777527905 NA NA prediction 0.607633711515014 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44157957 chr1:44157956 synonymous SNV . 0 20 hm7G_associated_SNPs_13130 0 0 1 0 2 KDM4A chr1:44157982 5'GT 44157982 Upstream 27bp 12545 chr3 180669151 180669151 1 + G T LUSC 180669152 + 180669132 180669172 41 GAGAAGATTTAATGGGCCTGGCAATAGGAACACATGGTAGT GAGAAGATTTAATGGGCCTTGCAATAGGAACACATGGTAGT < 41bp 0.501988337653503 0.80579598559943 NA NA prediction 0.607615295891855 Functional Gain - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180669152 chr3:180669151 synonymous SNV . 0 20 hm7G_associated_SNPs_13131 0 0 1 0 1 FXR1 chr3:180669086 3'AG 180669086 Downstream 66bp 12546 chr9 132985014 132985014 1 + G T LUAD 132985015 + 132984995 132985035 41 TGGATGCCATTTACCAGATGGTGGTGAGAAGCCGGGTCTCG TGGATGCCATTTACCAGATTGTGGTGAGAAGCCGGGTCTCG < 41bp 0.507064005128367 0.810871628668802 NA NA prediction 0.607615247080869 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132985015 chr9:132985014 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13132 0 0 0 0 2 NCS1 chr9:132984929 3'AG 132984929 Downstream 86bp 12547 chr9 132985014 132985014 1 + G T LUAD 132985015 + 132984995 132985035 41 TGGATGCCATTTACCAGATGGTGGTGAGAAGCCGGGTCTCG TGGATGCCATTTACCAGATTGTGGTGAGAAGCCGGGTCTCG < 41bp 0.507064005128367 0.810871628668802 NA NA prediction 0.607615247080869 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132985015 chr9:132985014 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13132 0 0 0 0 2 NCS1 chr9:132985017 5'GT 132985017 Upstream 4bp 12548 chr9 135864506 135864506 1 + G T UCEC 135864507 + 135864487 135864527 41 CGCTCCCATAGTGGGACCCGGCCCTTCGCCTGTGACATCTG CGCTCCCATAGTGGGACCCTGCCCTTCGCCTGTGACATCTG < 41bp 0.478505566223945 0.803772790974867 NA NA prediction 0.607545581949733 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864507 chr9:135864506 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13136 0 0 0 0 2 GFI1B chr9:135864448 3'AG 135864448 Downstream 59bp 12549 chr9 135864506 135864506 1 + G T UCEC 135864507 + 135864487 135864527 41 CGCTCCCATAGTGGGACCCGGCCCTTCGCCTGTGACATCTG CGCTCCCATAGTGGGACCCTGCCCTTCGCCTGTGACATCTG < 41bp 0.478505566223945 0.803772790974867 NA NA prediction 0.607545581949733 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864507 chr9:135864506 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13136 0 0 0 0 2 GFI1B chr9:135864585 5'GT 135864585 Upstream 80bp 12550 chr16 70503138 70503138 1 + G T GBM 70503139 + 70503119 70503159 41 TGGGGAGGCCCCCAGAGTTGGGGCAAGGCGATGCAGATGTA TGGGGAGGCCCCCAGAGTTTGGGCAAGGCGATGCAGATGTA < 41bp 0.474911547894025 0.803763582117336 NA NA prediction 0.607527164234672 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70503139 chr16:70503138 nonsynonymous SNV 0.959 0 20 hm7G_associated_SNPs_13137 0 0 1 0 2 FUK chr16:70503055 3'AG 70503055 Downstream 84bp 12551 chr16 70503138 70503138 1 + G T GBM 70503139 + 70503119 70503159 41 TGGGGAGGCCCCCAGAGTTGGGGCAAGGCGATGCAGATGTA TGGGGAGGCCCCCAGAGTTTGGGCAAGGCGATGCAGATGTA < 41bp 0.474911547894025 0.803763582117336 NA NA prediction 0.607527164234672 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70503139 chr16:70503138 nonsynonymous SNV 0.959 0 20 hm7G_associated_SNPs_13137 0 0 1 0 2 FUK chr16:70503226 5'GT 70503226 Upstream 89bp 12552 chr14 74041652 74041652 1 + G T CESC 74041653 + 74041633 74041673 41 CTGCTTGGAATTTCCAAAGGGGGTGAGCTCTGCCTTTCCAT CTGCTTGGAATTTCCAAAGTGGGTGAGCTCTGCCTTTCCAT < 41bp 0.501506810667928 0.805268005896251 NA NA prediction 0.607522390456645 Functional Gain - ACOT2 ENSG00000119673 CDS Human protein_coding chr14:74041653 chr14:74041652 nonsynonymous SNV 0.052 5 20 hm7G_associated_SNPs_13139 0 0 0 0 1 ACOT2 chr14:74041612 3'AG 74041612 Downstream 41bp 12553 chr1 231339746 231339746 1 + G T HNSC 231339747 + 231339727 231339767 41 AGCTGGACGACGGTGCCGGGGGACAGTTCCGGGTGAGGCCT AGCTGGACGACGGTGCCGGTGGACAGTTCCGGGTGAGGCCT < 41bp 0.483666075547482 0.803757061359545 NA NA prediction 0.60751412271909 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231339747 chr1:231339746 synonymous SNV . 0 20 hm7G_associated_SNPs_13141 0 0 0 0 1 TRIM67 chr1:231339758 5'GT 231339758 Upstream 13bp 12554 chr13 24190104 24190104 1 + G T LUAD 24190105 + 24190085 24190125 41 AGAAATGCAAGCCCTGTCTGGACTGCGCAGTGGTGAACCGC AGAAATGCAAGCCCTGTCTTGACTGCGCAGTGGTGAACCGC < 41bp 0.532722919994635 0.836476144186279 NA NA prediction 0.607506448383288 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24190105 chr13:24190104 synonymous SNV . 0 20 hm7G_associated_SNPs_13142 0 0 1 0 1 TNFRSF19 chr13:24190006 3'AG 24190006 Downstream 99bp 12555 chr19 1079965 1079965 1 + G T BLCA 1079966 + 1079946 1079986 41 AGATGATGCATATGCAGACGGCGCCGCTGCCCGTGCACTTC AGATGATGCATATGCAGACTGCGCCGCTGCCCGTGCACTTC < 41bp 0.474432207588109 0.803743352528983 NA NA prediction 0.607486705057966 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1079966 chr19:1079965 synonymous SNV . 0 20 hm7G_associated_SNPs_13143 0 0 1 0 1 ARHGAP45 chr19:1079927 3'AG 1079927 Downstream 39bp 12556 chr17 7915536 7915536 1 + G T UCEC 7915537 + 7915517 7915557 41 GGGGAGCAGAAGGCCCTGCGGCCCTCTGGGAGGGCAACCTG GGGGAGCAGAAGGCCCTGCTGCCCTCTGGGAGGGCAACCTG < 41bp 0.537542432347743 0.84127316274118 NA NA prediction 0.607461460786874 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7915537 chr17:7915536 synonymous SNV . 0 20 hm7G_associated_SNPs_13145 0 0 0 0 1 GUCY2D chr17:7915462 3'AG 7915462 Downstream 75bp 12557 chr17 41165103 41165103 1 + G T COAD 41165104 + 41165084 41165124 41 GATCCCCCTGGTATTCCGAGGACACACCCAGCAGGACCCGG GATCCCCCTGGTATTCCGATGACACACCCAGCAGGACCCGG < 41bp 0.52841878951222 0.832142044452129 NA NA prediction 0.607446509879817 Functional Gain - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165104 chr17:41165103 stopgain 0.679 0 20 hm7G_associated_SNPs_13146 0 0 1 0 1 IFI35 chr17:41165064 3'AG 41165064 Downstream 40bp 12558 chr22 21799242 21799242 1 + G T STAD 21799243 + 21799223 21799263 41 GGCAGGGCGCGGGGACATGGGGCCCGACATGGAGCTGCCCA GGCAGGGCGCGGGGACATGTGGCCCGACATGGAGCTGCCCA < 41bp 0.510586706385564 0.814304887018678 NA NA prediction 0.607436361266228 Functional Gain - HIC2 ENSG00000169635 CDS Human protein_coding chr22:21799243 chr22:21799242 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13147 0 0 1 0 1 HIC2 chr22:21799211 3'AG 21799211 Downstream 32bp 12559 chr1 114512812 114512812 1 + G T STAD 114512813 + 114512793 114512833 41 ACTGCACTGTAGCAACCCAGGCCTCAGGTCAGTGTTATCTT ACTGCACTGTAGCAACCCATGCCTCAGGTCAGTGTTATCTT < 41bp 0.495090404560052 0.803702428568562 NA NA prediction 0.607404857137125 Functional Gain - HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114512813 chr1:114512812 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_13148 0 0 1 0 1 HIPK1 chr1:114512819 5'GT 114512819 Upstream 8bp 12560 chr5 23523408 23523408 1 + G T HNSC 23523409 + 23523389 23523429 41 CTGAAACTCAGATCACCAAGGGGAGAAACTGCTATGAGTAT CTGAAACTCAGATCACCAATGGGAGAAACTGCTATGAGTAT < 41bp 0.503245710770404 0.806914597013528 NA NA prediction 0.607337772486249 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23523409 chr5:23523408 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_13151 0 0 0 0 2 PRDM9 chr5:23523400 3'AG 23523400 Downstream 9bp 12561 chr5 23523408 23523408 1 + G T HNSC 23523409 + 23523389 23523429 41 CTGAAACTCAGATCACCAAGGGGAGAAACTGCTATGAGTAT CTGAAACTCAGATCACCAATGGGAGAAACTGCTATGAGTAT < 41bp 0.503245710770404 0.806914597013528 NA NA prediction 0.607337772486249 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23523409 chr5:23523408 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_13151 0 0 0 0 2 PRDM9 chr5:23523467 5'GT 23523467 Upstream 60bp 12562 chr2 220437291 220437291 1 + G T rs34400751 220437292 + 220437272 220437312 41 CCCGAAGACATGCCCTGGGGGGCTTCACACACAGGGGCTCT CCCGAAGACATGCCCTGGGTGGCTTCACACACAGGGGCTCT < 41bp 0.490765279521565 0.803653768275815 NA NA prediction 0.60730753655163 Functional Gain - INHA ENSG00000123999 CDS Human protein_coding chr2:220437292 chr2:220437291 synonymous SNV . 0 20 hm7G_associated_SNPs_13152 0 0 1 0 1 INHA chr2:220437364 5'GT 220437364 Upstream 74bp 12563 chr19 51294930 51294930 1 + G T LIHC 51294931 + 51294911 51294951 41 AGGTGTACATCCGCAGCACGGACTTTGACCGCACGCTGGAG AGGTGTACATCCGCAGCACTGACTTTGACCGCACGCTGGAG < 41bp 0.491029940523729 0.80363677692828 NA NA prediction 0.607273553856561 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51294931 chr19:51294930 synonymous SNV . 0 20 hm7G_associated_SNPs_13153 0 0 0 0 1 ACPT chr19:51294913 3'AG 51294913 Downstream 18bp 12564 chr15 45965844 45965844 1 + G T LUSC 45965845 + 45965825 45965865 41 TTTCGCTCATCCCAAAATAGGGTCGAATTATTCAGTTAAGA TTTCGCTCATCCCAAAATATGGTCGAATTATTCAGTTAAGA < 41bp 0.511497641789723 0.815131348368445 NA NA prediction 0.607267413157443 Functional Gain - SQOR ENSG00000137767;ENSG00000260170 CDS Human other chr15:45965845 chr15:45965844 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_13155 0 0 0 0 1 SQOR chr15:45965805 3'AG 45965805 Downstream 40bp 12565 chr3 148876549 148876549 1 + G T UCEC 148876550 + 148876530 148876570 41 GCACGGACTGGACAGTAGAGGATGGATTACAGAAATACGAG GCACGGACTGGACAGTAGATGATGGATTACAGAAATACGAG < 41bp 0.498273471409542 0.80362586085756 NA NA prediction 0.607251721715119 Functional Gain - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148876550 chr3:148876549 nonsynonymous SNV 0.597 0 20 hm7G_associated_SNPs_13156 0 0 1 0 2 HPS3 chr3:148876453 3'AG 148876453 Downstream 97bp 12566 chr3 148876549 148876549 1 + G T UCEC 148876550 + 148876530 148876570 41 GCACGGACTGGACAGTAGAGGATGGATTACAGAAATACGAG GCACGGACTGGACAGTAGATGATGGATTACAGAAATACGAG < 41bp 0.498273471409542 0.80362586085756 NA NA prediction 0.607251721715119 Functional Gain - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148876550 chr3:148876549 nonsynonymous SNV 0.597 0 20 hm7G_associated_SNPs_13156 0 0 1 0 2 HPS3 chr3:148876633 5'GT 148876633 Upstream 85bp 12567 chr9 131755506 131755506 1 + G T COAD 131755507 + 131755487 131755527 41 GTCAGTGTATGCTTGTCTGGGCAATGATGCGGCTGCCATTC GTCAGTGTATGCTTGTCTGTGCAATGATGCGGCTGCCATTC < 41bp 0.480692583612844 0.803600461987719 NA NA prediction 0.607200923975439 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131755507 chr9:131755506 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13158 0 0 1 0 1 NUP188 chr9:131755476 3'AG 131755476 Downstream 31bp 12568 chr8 99162829 99162829 1 + G T LUSC 99162830 + 99162810 99162850 41 CTGCCGGGATGCTGTTTGCGGAAGAGCAAGCTAAGAATCTT CTGCCGGGATGCTGTTTGCTGAAGAGCAAGCTAAGAATCTT < 41bp 0.512117850778081 0.815701493632468 NA NA prediction 0.607167285708774 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99162830 chr8:99162829 synonymous SNV . 0 20 hm7G_associated_SNPs_13159 0 0 0 0 1 POP1 chr8:99162867 5'GT 99162867 Upstream 39bp 12569 chr19 50087180 50087180 1 + G T HNSC 50087181 + 50087161 50087201 41 CCCCTCAAGGAGCGCTTTTGGGAGAGCTACATCTACAATGG CCCCTCAAGGAGCGCTTTTTGGAGAGCTACATCTACAATGG < 41bp 0.513025222963522 0.816603813970572 NA NA prediction 0.6071571820141 Functional Gain - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50087181 chr19:50087180 nonsynonymous SNV 0.858 5 20 hm7G_associated_SNPs_13160 0 0 0 0 2 PRRG2 chr19:50087170 3'AG 50087170 Downstream 11bp 12570 chr19 50087180 50087180 1 + G T HNSC 50087181 + 50087161 50087201 41 CCCCTCAAGGAGCGCTTTTGGGAGAGCTACATCTACAATGG CCCCTCAAGGAGCGCTTTTTGGAGAGCTACATCTACAATGG < 41bp 0.513025222963522 0.816603813970572 NA NA prediction 0.6071571820141 Functional Gain - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50087181 chr19:50087180 nonsynonymous SNV 0.858 5 20 hm7G_associated_SNPs_13160 0 0 0 0 2 PRRG2 chr19:50087209 5'GT 50087209 Upstream 30bp 12571 chr20 30411331 30411331 1 + G T LUAD 30411332 + 30411312 30411352 41 CACCGCATGGTGGAGCTGAGGACCGGGAATGTCAGCAGTGA CACCGCATGGTGGAGCTGATGACCGGGAATGTCAGCAGTGA < 41bp 0.52057805114979 0.8241403728512 NA NA prediction 0.60712464340282 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30411332 chr20:30411331 nonsynonymous SNV 0.656 3 20 hm7G_associated_SNPs_13162 0 0 0 0 1 MYLK2 chr20:30411280 3'AG 30411280 Downstream 52bp 12572 chr3 38040859 38040859 1 + G T ESCA 38040860 + 38040840 38040880 41 TCATGTAAAGCTGGACGTGGGCAAGCTGCACACCCAGCCTA TCATGTAAAGCTGGACGTGTGCAAGCTGCACACCCAGCCTA < 41bp 0.484461490171401 0.803541480207682 NA NA prediction 0.607082960415365 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38040860 chr3:38040859 nonsynonymous SNV 0.777 1 20 hm7G_associated_SNPs_13163 0 0 0 0 2 VILL chr3:38040830 3'AG 38040830 Downstream 30bp 12573 chr3 38040859 38040859 1 + G T ESCA 38040860 + 38040840 38040880 41 TCATGTAAAGCTGGACGTGGGCAAGCTGCACACCCAGCCTA TCATGTAAAGCTGGACGTGTGCAAGCTGCACACCCAGCCTA < 41bp 0.484461490171401 0.803541480207682 NA NA prediction 0.607082960415365 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38040860 chr3:38040859 nonsynonymous SNV 0.777 1 20 hm7G_associated_SNPs_13163 0 0 0 0 2 VILL chr3:38040930 5'GT 38040930 Upstream 72bp 12574 chr16 77859351 77859351 1 + G T STAD 77859352 + 77859332 77859372 41 CTCGTGCACTCAGCTGGTGGGGGCGTGGTAAGTCAGCTGTT CTCGTGCACTCAGCTGGTGTGGGCGTGGTAAGTCAGCTGTT < 41bp 0.502542358507756 0.806069743729582 NA NA prediction 0.607054770443652 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77859352 chr16:77859351 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_13164 0 0 0 0 1 VAT1L chr16:77859358 5'GT 77859358 Upstream 8bp 12575 chr22 39496416 39496416 1 + G T UCEC 39496417 + 39496397 39496437 41 TGGCTCCACGCCCACGAGAGGCTACTTTGAAAACAAGGTGC TGGCTCCACGCCCACGAGATGCTACTTTGAAAACAAGGTGC < 41bp 0.512769624025946 0.816290032505564 NA NA prediction 0.607040816959237 Functional Gain - APOBEC3H ENSG00000100298 CDS Human protein_coding chr22:39496417 chr22:39496416 nonsynonymous SNV 0.013 3 20 hm7G_associated_SNPs_13165 0 0 0 0 1 APOBEC3H chr22:39496433 5'GT 39496433 Upstream 18bp 12576 chr11 46397494 46397494 1 + G T BLCA 46397495 + 46397475 46397515 41 ACGACAAGGAGCAGCTCAAGGAGGCCTGTGAGTGCGGTGGG ACGACAAGGAGCAGCTCAATGAGGCCTGTGAGTGCGGTGGG < 41bp 0.496605717654935 0.803518386762777 NA NA prediction 0.607036773525553 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46397495 chr11:46397494 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13166 0 0 1 0 2 DGKZ chr11:46397401 3'AG 46397401 Downstream 94bp 12577 chr11 46397494 46397494 1 + G T BLCA 46397495 + 46397475 46397515 41 ACGACAAGGAGCAGCTCAAGGAGGCCTGTGAGTGCGGTGGG ACGACAAGGAGCAGCTCAATGAGGCCTGTGAGTGCGGTGGG < 41bp 0.496605717654935 0.803518386762777 NA NA prediction 0.607036773525553 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46397495 chr11:46397494 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13166 0 0 1 0 2 DGKZ chr11:46397501 5'GT 46397501 Upstream 8bp 12578 chr12 56527396 56527396 1 + G T UCEC 56527397 + 56527377 56527417 41 CCCTCTACAAGGTGGGCAAGGCCAAGTTCACTTGAGGCTAG CCCTCTACAAGGTGGGCAATGCCAAGTTCACTTGAGGCTAG < 41bp 0.525131638797242 0.828640614232809 NA NA prediction 0.607017950871135 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527397 chr12:56527396 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13168 0 0 1 0 2 ESYT1 chr12:56527372 3'AG 56527372 Downstream 25bp 12579 chr12 56527396 56527396 1 + G T UCEC 56527397 + 56527377 56527417 41 CCCTCTACAAGGTGGGCAAGGCCAAGTTCACTTGAGGCTAG CCCTCTACAAGGTGGGCAATGCCAAGTTCACTTGAGGCTAG < 41bp 0.525131638797242 0.828640614232809 NA NA prediction 0.607017950871135 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527397 chr12:56527396 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13168 0 0 1 0 2 ESYT1 chr12:56527458 5'GT 56527458 Upstream 63bp 12580 chr17 38457222 38457222 1 + G T LUAD 38457223 + 38457203 38457243 41 CTCTTCAGCAGAAGATCTTGGTTTGCTCTTTGATGCTCTTG CTCTTCAGCAGAAGATCTTTGTTTGCTCTTTGATGCTCTTG < 41bp 0.503130772988747 0.806626316931532 NA NA prediction 0.60699108788557 Functional Gain - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38457223 chr17:38457222 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13170 0 0 1 0 1 CDC6 chr17:38457282 5'GT 38457282 Upstream 61bp 12581 chr2 113820102 113820102 1 + G T LGG 113820103 + 113820083 113820123 41 CTTCTACCGGCGGGACATGGGGCTCACCTCCAGCTTCGAGT CTTCTACCGGCGGGACATGTGGCTCACCTCCAGCTTCGAGT < 41bp 0.497892569849794 0.803486220883666 NA NA prediction 0.606972441767333 Functional Gain - IL36RN ENSG00000136695 CDS Human protein_coding chr2:113820103 chr2:113820102 nonsynonymous SNV 0.673 5 20 hm7G_associated_SNPs_13171 0 0 0 0 1 IL36RN chr2:113820030 3'AG 113820030 Downstream 73bp 12582 chr16 68328628 68328628 1 + G T THCA 68328629 + 68328609 68328649 41 TTGTTCTTCGTGGGCTCCCGGGAGGGCCACCTACCGGACCT TTGTTCTTCGTGGGCTCCCTGGAGGGCCACCTACCGGACCT < 41bp 0.516563847160777 0.820014539886569 NA NA prediction 0.606901385451584 Functional Gain - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68328629 chr16:68328628 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_13173 0 0 1 0 2 SLC7A6 chr16:68328608 3'AG 68328608 Downstream 21bp 12583 chr16 68328628 68328628 1 + G T THCA 68328629 + 68328609 68328649 41 TTGTTCTTCGTGGGCTCCCGGGAGGGCCACCTACCGGACCT TTGTTCTTCGTGGGCTCCCTGGAGGGCCACCTACCGGACCT < 41bp 0.516563847160777 0.820014539886569 NA NA prediction 0.606901385451584 Functional Gain - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68328629 chr16:68328628 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_13173 0 0 1 0 2 SLC7A6 chr16:68328704 5'GT 68328704 Upstream 77bp 12584 chr16 22163938 22163938 1 + G T GBM 22163939 + 22163919 22163959 41 TCACAGCCTGCTGACCAAAGGCTTCATCAATGAAAAGGTAG TCACAGCCTGCTGACCAAATGCTTCATCAATGAAAAGGTAG < 41bp 0.505896361559374 0.809334923614624 NA NA prediction 0.6068771241105 Functional Gain - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22163939 chr16:22163938 nonsynonymous SNV 0.372 2 20 hm7G_associated_SNPs_13175 0 0 0 1 1 VWA3A chr16:22163955 5'GT 22163955 Upstream 18bp 12585 chr20 2384465 2384465 1 + G T THCA 2384466 + 2384446 2384486 41 CTGACCTCTACAAGTATCCGGAAGGTAAGGGCCACATGGCG CTGACCTCTACAAGTATCCTGAAGGTAAGGGCCACATGGCG < 41bp 0.492380485894979 0.803425162760596 NA NA prediction 0.606850325521192 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384466 chr20:2384465 synonymous SNV . 0 20 hm7G_associated_SNPs_13176 0 0 0 0 1 TGM6 chr20:2384469 5'GT 2384469 Upstream 5bp 12586 chr6 44141019 44141019 1 + G T UCEC 44141020 + 44141000 44141040 41 GGGCCTTGAGGACTTCACAGGAGGCGTGGCCCAGAGCTTCC GGGCCTTGAGGACTTCACATGAGGCGTGGCCCAGAGCTTCC < 41bp 0.531163533255709 0.834583464771371 NA NA prediction 0.606839863031325 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44141020 chr6:44141019 stopgain 0.049 1 20 hm7G_associated_SNPs_13177 0 0 0 0 1 CAPN11 chr6:44140955 3'AG 44140955 Downstream 65bp 12587 chr16 88781328 88781328 1 + G T UCEC 88781329 + 88781309 88781349 41 GCTGCCGCGTGAACATGAAGGACTTGGTGAGTACGTGCCCA GCTGCCGCGTGAACATGAATGACTTGGTGAGTACGTGCCCA < 41bp 0.492783154417063 0.803414274590814 NA NA prediction 0.606828549181628 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781329 chr16:88781328 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_13178 0 0 0 0 2 CTU2 chr16:88781268 3'AG 88781268 Downstream 61bp 12588 chr16 88781328 88781328 1 + G T UCEC 88781329 + 88781309 88781349 41 GCTGCCGCGTGAACATGAAGGACTTGGTGAGTACGTGCCCA GCTGCCGCGTGAACATGAATGACTTGGTGAGTACGTGCCCA < 41bp 0.492783154417063 0.803414274590814 NA NA prediction 0.606828549181628 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88781329 chr16:88781328 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_13178 0 0 0 0 2 CTU2 chr16:88781334 5'GT 88781334 Upstream 7bp 12589 chr5 1214107 1214107 1 + G T UCEC 1214108 + 1214088 1214128 41 GGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCTCCT GGACACCTGGCTGGACGCGTGCGCACAGGTCTTCTTCTCCT < 41bp 0.506754009365926 0.810160819258962 NA NA prediction 0.606813619786072 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214108 chr5:1214107 nonsynonymous SNV 0.262 4 20 hm7G_associated_SNPs_13179 0 0 0 0 2 SLC6A19 chr5:1214068 3'AG 1214068 Downstream 40bp 12590 chr5 1214107 1214107 1 + G T UCEC 1214108 + 1214088 1214128 41 GGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCTCCT GGACACCTGGCTGGACGCGTGCGCACAGGTCTTCTTCTCCT < 41bp 0.506754009365926 0.810160819258962 NA NA prediction 0.606813619786072 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214108 chr5:1214107 nonsynonymous SNV 0.262 4 20 hm7G_associated_SNPs_13179 0 0 0 0 2 SLC6A19 chr5:1214180 5'GT 1214180 Upstream 74bp 12591 chr10 104488200 104488200 1 + G T LUAD 104488201 + 104488181 104488221 41 CTGGTAGGACGATGCCGGCGGTGATCTTCTGGCAGTGGGTG CTGGTAGGACGATGCCGGCTGTGATCTTCTGGCAGTGGGTG < 41bp 0.513389449480742 0.816792893641955 NA NA prediction 0.606806888322426 Functional Gain - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104488201 chr10:104488200 synonymous SNV . 0 20 hm7G_associated_SNPs_13180 0 0 1 0 2 SFXN2 chr10:104488188 3'AG 104488188 Downstream 13bp 12592 chr10 104488200 104488200 1 + G T LUAD 104488201 + 104488181 104488221 41 CTGGTAGGACGATGCCGGCGGTGATCTTCTGGCAGTGGGTG CTGGTAGGACGATGCCGGCTGTGATCTTCTGGCAGTGGGTG < 41bp 0.513389449480742 0.816792893641955 NA NA prediction 0.606806888322426 Functional Gain - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104488201 chr10:104488200 synonymous SNV . 0 20 hm7G_associated_SNPs_13180 0 0 1 0 2 SFXN2 chr10:104488286 5'GT 104488286 Upstream 87bp 12593 chr17 43323295 43323295 1 + G T COAD 43323296 + 43323276 43323316 41 AAGAAGCCGCTGCCCAGGAGGCAGGCGCTGATACCCCGGGC AAGAAGCCGCTGCCCAGGATGCAGGCGCTGATACCCCGGGC < 41bp 0.478860119099307 0.803378767348781 NA NA prediction 0.606757534697563 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323296 chr17:43323295 nonsynonymous SNV 0.980 0 20 hm7G_associated_SNPs_13181 0 0 0 0 2 FMNL1 chr17:43323245 3'AG 43323245 Downstream 51bp 12594 chr17 43323295 43323295 1 + G T COAD 43323296 + 43323276 43323316 41 AAGAAGCCGCTGCCCAGGAGGCAGGCGCTGATACCCCGGGC AAGAAGCCGCTGCCCAGGATGCAGGCGCTGATACCCCGGGC < 41bp 0.478860119099307 0.803378767348781 NA NA prediction 0.606757534697563 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323296 chr17:43323295 nonsynonymous SNV 0.980 0 20 hm7G_associated_SNPs_13181 0 0 0 0 2 FMNL1 chr17:43323340 5'GT 43323340 Upstream 46bp 12595 chr19 50926243 50926243 1 + G T COAD 50926244 + 50926224 50926264 41 AACTGGCCCCCAGCCTGGAGGCCCCGGGGCCTGGCCTCCCT AACTGGCCCCCAGCCTGGATGCCCCGGGGCCTGGCCTCCCT < 41bp 0.475446962041839 0.803370767216837 NA NA prediction 0.606741534433675 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926244 chr19:50926243 nonsynonymous SNV 0.885 2 20 hm7G_associated_SNPs_13182 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 52bp 12596 chr11 114027102 114027102 1 + G T THCA 114027103 + 114027083 114027123 41 GTACGGGTGCGAGCTCTGCGGGAAGCGGTTCCTGGATAGTT GTACGGGTGCGAGCTCTGCTGGAAGCGGTTCCTGGATAGTT < 41bp 0.49580648883091 0.803356050897793 NA NA prediction 0.606712101795586 Functional Gain - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114027103 chr11:114027102 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13183 0 0 0 0 2 ZBTB16 chr11:114027059 3'AG 114027059 Downstream 44bp 12597 chr11 114027102 114027102 1 + G T THCA 114027103 + 114027083 114027123 41 GTACGGGTGCGAGCTCTGCGGGAAGCGGTTCCTGGATAGTT GTACGGGTGCGAGCTCTGCTGGAAGCGGTTCCTGGATAGTT < 41bp 0.49580648883091 0.803356050897793 NA NA prediction 0.606712101795586 Functional Gain - ZBTB16 ENSG00000109906 CDS Human protein_coding chr11:114027103 chr11:114027102 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13183 0 0 0 0 2 ZBTB16 chr11:114027156 5'GT 114027156 Upstream 55bp 12598 chr19 41038677 41038677 1 + G T LUSC 41038678 + 41038658 41038698 41 TGGCTGGAGAAGATCGAGCGGGTGAGGAAGCTGATGGCCCC TGGCTGGAGAAGATCGAGCTGGTGAGGAAGCTGATGGCCCC < 41bp 0.506691642732689 0.810047468606298 NA NA prediction 0.606711651747219 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41038678 chr19:41038677 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_13184 0 0 0 0 1 SPTBN4 chr19:41038678 5'GT 41038678 Upstream 2bp 12599 chr2 44102361 44102361 1 + G T UCEC 44102362 + 44102342 44102382 41 TACTGGCTGGCCAACCTGAGGCCAGGCCTCCAGCCCTTCCT TACTGGCTGGCCAACCTGATGCCAGGCCTCCAGCCCTTCCT < 41bp 0.526424645327394 0.82977524993597 NA NA prediction 0.606701209217152 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44102362 chr2:44102361 nonsynonymous SNV 0.348 2 20 hm7G_associated_SNPs_13185 0 0 0 0 1 ABCG8 chr2:44102285 3'AG 44102285 Downstream 77bp 12600 chr2 62228026 62228026 1 + G T SARC 62228027 + 62228007 62228047 41 GGGCTTCGGGGCCTGAGCTGGAGAGTTGATGGCAAGTCTCA GGGCTTCGGGGCCTGAGCTTGAGAGTTGATGGCAAGTCTCA < 41bp 0.512560522039229 0.815905806549281 NA NA prediction 0.606690569020103 Functional Gain - COMMD1 ENSG00000173163 CDS Human protein_coding chr2:62228027 chr2:62228026 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13186 0 0 0 0 1 COMMD1 chr2:62228117 5'GT 62228117 Upstream 92bp 12601 chr2 238419407 238419407 1 + G T LUAD 238419408 + 238419388 238419428 41 CGTCCACCCGGAGGAGCAGGGCTGGATCTGTGACCCCTGCC CGTCCACCCGGAGGAGCAGTGCTGGATCTGTGACCCCTGCC < 41bp 0.536474534853983 0.839818547486338 NA NA prediction 0.606688025264709 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238419408 chr2:238419407 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13187 0 0 0 0 1 MLPH chr2:238419438 5'GT 238419438 Upstream 32bp 12602 chr11 7081206 7081206 1 + G T TGCT 7081207 + 7081187 7081227 41 ACAAGAGCCTGACGCATCTGGATCTAGGATCAAACTGGCTA ACAAGAGCCTGACGCATCTTGATCTAGGATCAAACTGGCTA < 41bp 0.5157853501157 0.819123468542533 NA NA prediction 0.606676236853667 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7081207 chr11:7081206 synonymous SNV . 0 20 hm7G_associated_SNPs_13189 0 0 0 0 2 NLRP14 chr11:7081125 3'AG 7081125 Downstream 82bp 12603 chr11 7081206 7081206 1 + G T TGCT 7081207 + 7081187 7081227 41 ACAAGAGCCTGACGCATCTGGATCTAGGATCAAACTGGCTA ACAAGAGCCTGACGCATCTTGATCTAGGATCAAACTGGCTA < 41bp 0.5157853501157 0.819123468542533 NA NA prediction 0.606676236853667 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7081207 chr11:7081206 synonymous SNV . 0 20 hm7G_associated_SNPs_13189 0 0 0 0 2 NLRP14 chr11:7081295 5'GT 7081295 Upstream 90bp 12604 chr19 54932498 54932498 1 + G T LUAD 54932499 + 54932479 54932519 41 AACAGTGAGACCAGTGATGGGGTGTCCCAGCTCAGCTCTGC AACAGTGAGACCAGTGATGTGGTGTCCCAGCTCAGCTCTGC < 41bp 0.47615158971997 0.803336537332939 NA NA prediction 0.606673074665878 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54932499 chr19:54932498 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13190 0 0 0 0 2 TTYH1 chr19:54932451 3'AG 54932451 Downstream 48bp 12605 chr19 54932498 54932498 1 + G T LUAD 54932499 + 54932479 54932519 41 AACAGTGAGACCAGTGATGGGGTGTCCCAGCTCAGCTCTGC AACAGTGAGACCAGTGATGTGGTGTCCCAGCTCAGCTCTGC < 41bp 0.47615158971997 0.803336537332939 NA NA prediction 0.606673074665878 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54932499 chr19:54932498 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13190 0 0 0 0 2 TTYH1 chr19:54932562 5'GT 54932562 Upstream 65bp 12606 chr12 58009721 58009721 1 + G T UCEC 58009722 + 58009702 58009742 41 TCCAGCGCTATGTCCTGCAGGCTGCAGACCCTGCTATCAGT TCCAGCGCTATGTCCTGCATGCTGCAGACCCTGCTATCAGT < 41bp 0.525516590515034 0.828851101200698 NA NA prediction 0.606669021371328 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58009722 chr12:58009721 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_13191 0 0 0 0 1 ARHGEF25 chr12:58009800 5'GT 58009800 Upstream 80bp 12607 chr22 41531831 41531831 1 + G T TGCT 41531832 + 41531812 41531852 41 CTTAGGTGCTAGTCCTATGGGAGTAAATGGAGGTGTAGGAG CTTAGGTGCTAGTCCTATGTGAGTAAATGGAGGTGTAGGAG < 41bp 0.504428165151093 0.807733684084183 NA NA prediction 0.606611037866181 Functional Gain - EP300 ENSG00000100393 CDS Human protein_coding chr22:41531832 chr22:41531831 stopgain 1.000 1 20 hm7G_associated_SNPs_13193 0 0 1 0 2 EP300 chr22:41531817 3'AG 41531817 Downstream 15bp 12608 chr22 41531831 41531831 1 + G T TGCT 41531832 + 41531812 41531852 41 CTTAGGTGCTAGTCCTATGGGAGTAAATGGAGGTGTAGGAG CTTAGGTGCTAGTCCTATGTGAGTAAATGGAGGTGTAGGAG < 41bp 0.504428165151093 0.807733684084183 NA NA prediction 0.606611037866181 Functional Gain - EP300 ENSG00000100393 CDS Human protein_coding chr22:41531832 chr22:41531831 stopgain 1.000 1 20 hm7G_associated_SNPs_13193 0 0 1 0 2 EP300 chr22:41531910 5'GT 41531910 Upstream 80bp 12609 chr19 44604977 44604977 1 + G T LUAD 44604978 + 44604958 44604998 41 CAATGACCTTCAAGGACGTGGCTGTGGTCTTCACTGAGGAA CAATGACCTTCAAGGACGTTGCTGTGGTCTTCACTGAGGAA < 41bp 0.488918880107251 0.803295825120132 NA NA prediction 0.606591650240263 Functional Gain - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44604978 chr19:44604977 synonymous SNV . 0 20 hm7G_associated_SNPs_13194 0 0 1 0 1 ZNF224 chr19:44604954 3'AG 44604954 Downstream 24bp 12610 chr19 49094943 49094943 1 + G T LIHC 49094944 + 49094924 49094964 41 AGATCGCCGGGCAGTTAAAGGACCCGGGCACACCCGACCAG AGATCGCCGGGCAGTTAAATGACCCGGGCACACCCGACCAG < 41bp 0.529528703427247 0.832777729082055 NA NA prediction 0.606498051309615 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49094944 chr19:49094943 nonsynonymous SNV 0.960 2 20 hm7G_associated_SNPs_13196 0 0 0 0 2 SULT2B1 chr19:49094866 3'AG 49094866 Downstream 78bp 12611 chr19 49094943 49094943 1 + G T LIHC 49094944 + 49094924 49094964 41 AGATCGCCGGGCAGTTAAAGGACCCGGGCACACCCGACCAG AGATCGCCGGGCAGTTAAATGACCCGGGCACACCCGACCAG < 41bp 0.529528703427247 0.832777729082055 NA NA prediction 0.606498051309615 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49094944 chr19:49094943 nonsynonymous SNV 0.960 2 20 hm7G_associated_SNPs_13196 0 0 0 0 2 SULT2B1 chr19:49094992 5'GT 49094992 Upstream 50bp 12612 chr16 16127026 16127026 1 + G T UCEC 16127027 + 16127007 16127047 41 CACCTTCTGGTGGATCACAGGGTAAGGCCAGGCCCCCCAGA CACCTTCTGGTGGATCACATGGTAAGGCCAGGCCCCCCAGA < 41bp 0.489340670129788 0.803210729711635 NA NA prediction 0.606421459423271 Functional Gain - ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16127027 chr16:16127026 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13199 0 0 1 0 1 ABCC1 chr16:16126966 3'AG 16126966 Downstream 61bp 12613 chr1 156555588 156555588 1 + G T SARC 156555589 + 156555569 156555609 41 CAAGCACACGCCCTGCAGAGGGACAGTCCTCGGCAAAGCCT CAAGCACACGCCCTGCAGATGGACAGTCCTCGGCAAAGCCT < 41bp 0.494227981349073 0.803195319041426 NA NA prediction 0.606390638082853 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156555589 chr1:156555588 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_13202 0 0 0 0 1 TTC24 chr1:156555618 5'GT 156555618 Upstream 31bp 12614 chr12 1937326 1937326 1 + G T ESCA 1937327 + 1937307 1937347 41 GCCTCACCATGCTGGCGCCGGGCAGCAGCCCTGGGCAGAGG GCCTCACCATGCTGGCGCCTGGCAGCAGCCCTGGGCAGAGG < 41bp 0.520328045296692 0.82350974807818 NA NA prediction 0.606363405562977 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1937327 chr12:1937326 synonymous SNV . 0 20 hm7G_associated_SNPs_13203 0 0 0 0 2 LRTM2 chr12:1937242 3'AG 1937242 Downstream 85bp 12615 chr12 1937326 1937326 1 + G T ESCA 1937327 + 1937307 1937347 41 GCCTCACCATGCTGGCGCCGGGCAGCAGCCCTGGGCAGAGG GCCTCACCATGCTGGCGCCTGGCAGCAGCCCTGGGCAGAGG < 41bp 0.520328045296692 0.82350974807818 NA NA prediction 0.606363405562977 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1937327 chr12:1937326 synonymous SNV . 0 20 hm7G_associated_SNPs_13203 0 0 0 0 2 LRTM2 chr12:1937381 5'GT 1937381 Upstream 56bp 12616 chr9 100056371 100056371 1 + G T LUSC 100056372 + 100056352 100056392 41 CAGGACCATCATGCAGAGTGGCTATGAGGGAGCAGACATGG CAGGACCATCATGCAGAGTTGCTATGAGGGAGCAGACATGG < 41bp 0.526317678426909 0.829488012970518 NA NA prediction 0.606340669087218 Functional Gain - LOC100499484;LOC100499484-C9ORF174 ENSG00000197816 CDS Human other chr9:100056372 chr9:100056371 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_13204 0 0 0 0 1 LOC100499484;LOC100499484-C9ORF174 chr9:100056392 5'GT 100056392 Upstream 22bp 12617 chr7 99047957 99047957 1 + G T KIRC 99047958 + 99047938 99047978 41 ACCCCGAGTCCAAGATCAAGGACTGTCCTTGGTATGACCGT ACCCCGAGTCCAAGATCAATGACTGTCCTTGGTATGACCGT < 41bp 0.480277666396781 0.803154251614167 NA NA prediction 0.606308503228335 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99047958 chr7:99047957 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13205 0 0 1 0 2 CPSF4 chr7:99047899 3'AG 99047899 Downstream 59bp 12618 chr7 99047957 99047957 1 + G T KIRC 99047958 + 99047938 99047978 41 ACCCCGAGTCCAAGATCAAGGACTGTCCTTGGTATGACCGT ACCCCGAGTCCAAGATCAATGACTGTCCTTGGTATGACCGT < 41bp 0.480277666396781 0.803154251614167 NA NA prediction 0.606308503228335 Functional Gain - CPSF4 ENSG00000160917 CDS Human protein_coding chr7:99047958 chr7:99047957 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13205 0 0 1 0 2 CPSF4 chr7:99047994 5'GT 99047994 Upstream 38bp 12619 chr1 155582963 155582963 1 + G T LUAD 155582964 + 155582944 155582984 41 TGCATGTGGGGAGCCTTCTGGAACACGTTGCTTTGCCCAGT TGCATGTGGGGAGCCTTCTTGAACACGTTGCTTTGCCCAGT < 41bp 0.490281068186545 0.803141766080294 NA NA prediction 0.606283532160588 Functional Gain - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582964 chr1:155582963 stopgain 0.211 0 20 hm7G_associated_SNPs_13206 0 0 1 0 1 MSTO1 chr1:155583024 5'GT 155583024 Upstream 62bp 12620 chr1 154315331 154315331 1 + G T LUAD 154315332 + 154315312 154315352 41 ACAAGAAGTTCTTATTTTGGGACCCCAGCCTGCTGGAGGCT ACAAGAAGTTCTTATTTTGTGACCCCAGCCTGCTGGAGGCT < 41bp 0.479002681928489 0.80313836242658 NA NA prediction 0.60627672485316 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154315332 chr1:154315331 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13207 0 0 1 0 1 ATP8B2 chr1:154315272 3'AG 154315272 Downstream 60bp 12621 chr16 88872177 88872177 1 + G T LUAD 88872178 + 88872158 88872198 41 AGATCAAAACCGTGTACCCGGCCTCCTACCGCTTCCGCCAG AGATCAAAACCGTGTACCCTGCCTCCTACCGCTTCCGCCAG < 41bp 0.479757752159411 0.803114048819806 NA NA prediction 0.606228097639612 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88872178 chr16:88872177 synonymous SNV . 0 20 hm7G_associated_SNPs_13208 0 0 1 0 1 CDT1 chr16:88872132 3'AG 88872132 Downstream 46bp 12622 chr20 43550285 43550285 1 + G T LUSC 43550286 + 43550266 43550306 41 GCGGGCGGCTGCTGTACGCGGGCCGGGCCCAAAAGCGCGTG GCGGGCGGCTGCTGTACGCTGGCCGGGCCCAAAAGCGCGTG < 41bp 0.51484483146224 0.817957810438235 NA NA prediction 0.60622595795199 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43550286 chr20:43550285 synonymous SNV . 0 20 hm7G_associated_SNPs_13209 0 0 1 0 2 PABPC1L chr20:43550235 3'AG 43550235 Downstream 51bp 12623 chr20 43550285 43550285 1 + G T LUSC 43550286 + 43550266 43550306 41 GCGGGCGGCTGCTGTACGCGGGCCGGGCCCAAAAGCGCGTG GCGGGCGGCTGCTGTACGCTGGCCGGGCCCAAAAGCGCGTG < 41bp 0.51484483146224 0.817957810438235 NA NA prediction 0.60622595795199 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43550286 chr20:43550285 synonymous SNV . 0 20 hm7G_associated_SNPs_13209 0 0 1 0 2 PABPC1L chr20:43550372 5'GT 43550372 Upstream 88bp 12624 chr1 29185484 29185484 1 + G T LUAD 29185485 + 29185465 29185505 41 GGTACACTAAGATGAAGACGGCCACCAACATCTACATCTTC GGTACACTAAGATGAAGACTGCCACCAACATCTACATCTTC < 41bp 0.501966373272733 0.805057149196055 NA NA prediction 0.606181551846643 Functional Gain - OPRD1 ENSG00000116329 CDS Human protein_coding chr1:29185485 chr1:29185484 synonymous SNV . 0 20 hm7G_associated_SNPs_13211 0 0 1 0 1 OPRD1 chr1:29185466 3'AG 29185466 Downstream 19bp 12625 chr16 1251719 1251719 1 + G T LUAD 1251720 + 1251700 1251740 41 TGATTGCCACGCAGTTCTCGGAGACGAAGCAGCGGGAGAGT TGATTGCCACGCAGTTCTCTGAGACGAAGCAGCGGGAGAGT < 41bp 0.487893090706643 0.803084572570925 NA NA prediction 0.606169145141851 Functional Gain - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1251720 chr16:1251719 synonymous SNV . 0 20 hm7G_associated_SNPs_13212 0 0 1 0 1 CACNA1H chr16:1251663 3'AG 1251663 Downstream 57bp 12626 chr18 61449729 61449729 1 + G T UCS 61449730 + 61449710 61449750 41 TCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGAT TCTTCGCTGCCCTGGCCCTTGTCCGCTTGGGCGCTCAAGAT < 41bp 0.510690607067218 0.813761663798782 NA NA prediction 0.606142113463126 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61449730 chr18:61449729 synonymous SNV . 0 20 hm7G_associated_SNPs_13214 0 0 0 0 1 SERPINB7 chr18:61449774 5'GT 61449774 Upstream 46bp 12627 chr16 28898571 28898571 1 + G T GBM 28898572 + 28898552 28898592 41 ACCCCCGAGCTGTCAACCAGGACAAGAAGAACATGCTTTTC ACCCCCGAGCTGTCAACCATGACAAGAAGAACATGCTTTTC < 41bp 0.486555254170429 0.803070029656138 NA NA prediction 0.606140059312277 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28898572 chr16:28898571 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13215 0 0 0 0 2 ATP2A1 chr16:28898510 3'AG 28898510 Downstream 62bp 12628 chr16 28898571 28898571 1 + G T GBM 28898572 + 28898552 28898592 41 ACCCCCGAGCTGTCAACCAGGACAAGAAGAACATGCTTTTC ACCCCCGAGCTGTCAACCATGACAAGAAGAACATGCTTTTC < 41bp 0.486555254170429 0.803070029656138 NA NA prediction 0.606140059312277 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28898572 chr16:28898571 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13215 0 0 0 0 2 ATP2A1 chr16:28898595 5'GT 28898595 Upstream 25bp 12629 chr12 52380697 52380697 1 + G T LUAD 52380698 + 52380678 52380718 41 GCCCTCGGGCTTGTATATTGGGAGATTGCTCGAAGATGCAA GCCCTCGGGCTTGTATATTTGGAGATTGCTCGAAGATGCAA < 41bp 0.518373225159982 0.821389929448719 NA NA prediction 0.606033408577474 Functional Gain - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52380698 chr12:52380697 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_13216 0 0 1 0 2 ACVR1B chr12:52380602 3'AG 52380602 Downstream 96bp 12630 chr12 52380697 52380697 1 + G T LUAD 52380698 + 52380678 52380718 41 GCCCTCGGGCTTGTATATTGGGAGATTGCTCGAAGATGCAA GCCCTCGGGCTTGTATATTTGGAGATTGCTCGAAGATGCAA < 41bp 0.518373225159982 0.821389929448719 NA NA prediction 0.606033408577474 Functional Gain - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52380698 chr12:52380697 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_13216 0 0 1 0 2 ACVR1B chr12:52380726 5'GT 52380726 Upstream 30bp 12631 chr19 41778106 41778106 1 + G T LUAD 41778107 + 41778087 41778127 41 GCCTTATGAAGAAAACCGGGGACGGGGGTACTTTGAGCACC GCCTTATGAAGAAAACCGGTGACGGGGGTACTTTGAGCACC < 41bp 0.504252204993907 0.807264857747502 NA NA prediction 0.606025305507191 Functional Gain - HNRNPUL1 ENSG00000105323 CDS Human protein_coding chr19:41778107 chr19:41778106 stopgain 0.994 1 20 hm7G_associated_SNPs_13217 0 0 1 0 1 HNRNPUL1 chr19:41778140 5'GT 41778140 Upstream 35bp 12632 chr12 81532956 81532956 1 + G T STAD 81532957 + 81532937 81532977 41 GGCATTGAACCTGGAAGGAGGGTAGAGTACGTACCACTTGT GGCATTGAACCTGGAAGGATGGTAGAGTACGTACCACTTGT < 41bp 0.506593345148083 0.809593479147671 NA NA prediction 0.606000267999175 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81532957 chr12:81532956 nonsynonymous SNV 0.830 1 20 hm7G_associated_SNPs_13218 0 0 0 0 2 ACSS3 chr12:81532910 3'AG 81532910 Downstream 47bp 12633 chr12 81532956 81532956 1 + G T STAD 81532957 + 81532937 81532977 41 GGCATTGAACCTGGAAGGAGGGTAGAGTACGTACCACTTGT GGCATTGAACCTGGAAGGATGGTAGAGTACGTACCACTTGT < 41bp 0.506593345148083 0.809593479147671 NA NA prediction 0.606000267999175 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81532957 chr12:81532956 nonsynonymous SNV 0.830 1 20 hm7G_associated_SNPs_13218 0 0 0 0 2 ACSS3 chr12:81533044 5'GT 81533044 Upstream 89bp 12634 chr2 11945240 11945240 1 + G T UCEC 11945241 + 11945221 11945261 41 CCCACCCTTGGGAAGGATTGGACCCATCAGGGCATCGCTAA CCCACCCTTGGGAAGGATTTGACCCATCAGGGCATCGCTAA < 41bp 0.513802452767066 0.816800013543214 NA NA prediction 0.605995121552296 Functional Gain - LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11945241 chr2:11945240 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13219 0 0 1 0 2 LPIN1 chr2:11945196 3'AG 11945196 Downstream 45bp 12635 chr2 11945240 11945240 1 + G T UCEC 11945241 + 11945221 11945261 41 CCCACCCTTGGGAAGGATTGGACCCATCAGGGCATCGCTAA CCCACCCTTGGGAAGGATTTGACCCATCAGGGCATCGCTAA < 41bp 0.513802452767066 0.816800013543214 NA NA prediction 0.605995121552296 Functional Gain - LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11945241 chr2:11945240 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13219 0 0 1 0 2 LPIN1 chr2:11945282 5'GT 11945282 Upstream 43bp 12636 chr1 155015935 155015935 1 + G T KIRP 155015936 + 155015916 155015956 41 CCCGGCTGGAGTGGGCCCTGGGGCTGCTGCACGTGCTGCTC CCCGGCTGGAGTGGGCCCTTGGGCTGCTGCACGTGCTGCTC < 41bp 0.467647675038816 0.802996346789013 NA NA prediction 0.605992693578026 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155015936 chr1:155015935 synonymous SNV . 0 20 hm7G_associated_SNPs_13220 0 0 0 0 1 DCST1 chr1:155015985 5'GT 155015985 Upstream 51bp 12637 chr3 142405176 142405176 1 + G T GBM 142405177 + 142405157 142405197 41 AGATTGCCCCTAAAGGTGGGGAAGATGGACCTGCCATTGCC AGATTGCCCCTAAAGGTGGTGAAGATGGACCTGCCATTGCC < 41bp 0.500286192404769 0.803269459575066 NA NA prediction 0.605966534340595 Functional Gain - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142405177 chr3:142405176 synonymous SNV . 0 20 hm7G_associated_SNPs_13221 0 0 0 0 2 PLS1 chr3:142405126 3'AG 142405126 Downstream 51bp 12638 chr3 142405176 142405176 1 + G T GBM 142405177 + 142405157 142405197 41 AGATTGCCCCTAAAGGTGGGGAAGATGGACCTGCCATTGCC AGATTGCCCCTAAAGGTGGTGAAGATGGACCTGCCATTGCC < 41bp 0.500286192404769 0.803269459575066 NA NA prediction 0.605966534340595 Functional Gain - PLS1 ENSG00000120756 CDS Human protein_coding chr3:142405177 chr3:142405176 synonymous SNV . 0 20 hm7G_associated_SNPs_13221 0 0 0 0 2 PLS1 chr3:142405218 5'GT 142405218 Upstream 43bp 12639 chr12 98991751 98991751 1 + G T GBM 98991752 + 98991732 98991772 41 CCTTGGCTACTCCATGCAGGGACTCTGCAAGTTTGGCTTTT CCTTGGCTACTCCATGCAGTGACTCTGCAAGTTTGGCTTTT < 41bp 0.492920751617718 0.802977348038644 NA NA prediction 0.605954696077287 Functional Gain - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98991752 chr12:98991751 stopgain 0.842 1 20 hm7G_associated_SNPs_13222 0 0 1 0 1 SLC25A3 chr12:98991813 5'GT 98991813 Upstream 63bp 12640 chr2 135076222 135076222 1 + G T GBM 135076223 + 135076203 135076243 41 ATGTTCTTCTTGTTTCAGTGGATGAAAGACATGTGGCGTTC ATGTTCTTCTTGTTTCAGTTGATGAAAGACATGTGGCGTTC < 41bp 0.507936985505612 0.810910898647081 NA NA prediction 0.605947826282937 Functional Gain - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135076223 chr2:135076222 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13223 0 0 0 0 2 MGAT5 chr2:135076221 3'AG 135076221 Downstream 2bp 12641 chr2 135076222 135076222 1 + G T GBM 135076223 + 135076203 135076243 41 ATGTTCTTCTTGTTTCAGTGGATGAAAGACATGTGGCGTTC ATGTTCTTCTTGTTTCAGTTGATGAAAGACATGTGGCGTTC < 41bp 0.507936985505612 0.810910898647081 NA NA prediction 0.605947826282937 Functional Gain - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135076223 chr2:135076222 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13223 0 0 0 0 2 MGAT5 chr2:135076310 5'GT 135076310 Upstream 89bp 12642 chr16 66426257 66426257 1 + G T LUSC 66426258 + 66426238 66426278 41 TTGGCACAGTGCTGGCCATGGACCCTGATGCGGCTAGGCAT TTGGCACAGTGCTGGCCATTGACCCTGATGCGGCTAGGCAT < 41bp 0.531168895159315 0.834122272169215 NA NA prediction 0.6059067540198 Functional Gain - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66426258 chr16:66426257 nonsynonymous SNV 0.058 0 20 hm7G_associated_SNPs_13224 0 0 0 0 1 CDH5 chr16:66426286 5'GT 66426286 Upstream 30bp 12643 chrX 70613210 70613210 1 + G T COAD 70613211 + 70613191 70613231 41 GCACAATGTCAACAGAACAGGCTCGTTCTGGAGAGGGGCCC GCACAATGTCAACAGAACATGCTCGTTCTGGAGAGGGGCCC < 41bp 0.494989169976446 0.802941213040875 NA NA prediction 0.60588242608175 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70613211 chrX:70613210 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13225 0 0 1 0 1 TAF1 chrX:70613151 3'AG 70613151 Downstream 60bp 12644 chr12 132334525 132334525 1 + G T UCEC 132334526 + 132334506 132334546 41 ATGACCACACGAGGCACATGGACCCCGGCTACCCCGCCCAG ATGACCACACGAGGCACATTGACCCCGGCTACCCCGCCCAG < 41bp 0.475521973797261 0.802930275169232 NA NA prediction 0.605860550338465 Functional Gain - MMP17 ENSG00000198598 CDS Human protein_coding chr12:132334526 chr12:132334525 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_13227 0 0 0 0 1 MMP17 chr12:132334604 5'GT 132334604 Upstream 80bp 12645 chr6 43745357 43745357 1 + G T UCEC 43745358 + 43745338 43745378 41 GGGGCTGCTGCAATGACGAGGGCCTGGAGTGTGTGCCCACT GGGGCTGCTGCAATGACGATGGCCTGGAGTGTGTGCCCACT < 41bp 0.521599464576926 0.824517557946482 NA NA prediction 0.605836186739112 Functional Gain - VEGFA ENSG00000112715 CDS Human protein_coding chr6:43745358 chr6:43745357 nonsynonymous SNV 0.774 3 20 hm7G_associated_SNPs_13228 0 0 1 0 1 VEGFA chr6:43745402 5'GT 43745402 Upstream 46bp 12646 chr20 44108701 44108701 1 + G T SKCM 44108702 + 44108682 44108722 41 ATGCTGCCGCAATGGCTGTGGGAAGGTGTCCTGTGTCACTC ATGCTGCCGCAATGGCTGTTGGAAGGTGTCCTGTGTCACTC < 41bp 0.481919578939395 0.802917873485389 NA NA prediction 0.605835746970778 Functional Gain - WFDC2 ENSG00000101443 CDS Human protein_coding chr20:44108702 chr20:44108701 nonsynonymous SNV 0.921 3 20 hm7G_associated_SNPs_13229 0 0 0 0 1 WFDC2 chr20:44108734 5'GT 44108734 Upstream 34bp 12647 chr1 203044707 203044707 1 + G T UCEC 203044708 + 203044688 203044728 41 TGTCCCCCATGGTGCAGGGGGATGACAAGGTGTTTCGCCGC TGTCCCCCATGGTGCAGGGTGATGACAAGGTGTTTCGCCGC < 41bp 0.515830425333522 0.818735662318239 NA NA prediction 0.605810473969434 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203044708 chr1:203044707 synonymous SNV . 0 20 hm7G_associated_SNPs_13230 0 0 0 0 1 PPFIA4 chr1:203044705 3'AG 203044705 Downstream 3bp 12648 chr11 7083652 7083652 1 + G T LUAD 7083653 + 7083633 7083673 41 CCTGAGGAGCCTGGACCTTGGGAACAACGATTTGCAGGATG CCTGAGGAGCCTGGACCTTTGGAACAACGATTTGCAGGATG < 41bp 0.493942906049905 0.802878926326989 NA NA prediction 0.605757852653978 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7083653 chr11:7083652 nonsynonymous SNV 0.881 4 20 hm7G_associated_SNPs_13231 0 0 0 0 2 NLRP14 chr11:7083564 3'AG 7083564 Downstream 89bp 12649 chr11 7083652 7083652 1 + G T LUAD 7083653 + 7083633 7083673 41 CCTGAGGAGCCTGGACCTTGGGAACAACGATTTGCAGGATG CCTGAGGAGCCTGGACCTTTGGAACAACGATTTGCAGGATG < 41bp 0.493942906049905 0.802878926326989 NA NA prediction 0.605757852653978 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7083653 chr11:7083652 nonsynonymous SNV 0.881 4 20 hm7G_associated_SNPs_13231 0 0 0 0 2 NLRP14 chr11:7083734 5'GT 7083734 Upstream 83bp 12650 chr10 105182844 105182844 1 + G T LUAD 105182845 + 105182825 105182865 41 GGCTCTGTGGTATTCAGTGGGGGTCCAGTGCCCGACCTGGT GGCTCTGTGGTATTCAGTGTGGGTCCAGTGCCCGACCTGGT < 41bp 0.526076325454158 0.82893186612058 NA NA prediction 0.605711081332844 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105182845 chr10:105182844 nonsynonymous SNV 0.369 0 20 hm7G_associated_SNPs_13232 0 0 1 0 2 PDCD11 chr10:105182745 3'AG 105182745 Downstream 100bp 12651 chr10 105182844 105182844 1 + G T LUAD 105182845 + 105182825 105182865 41 GGCTCTGTGGTATTCAGTGGGGGTCCAGTGCCCGACCTGGT GGCTCTGTGGTATTCAGTGTGGGTCCAGTGCCCGACCTGGT < 41bp 0.526076325454158 0.82893186612058 NA NA prediction 0.605711081332844 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105182845 chr10:105182844 nonsynonymous SNV 0.369 0 20 hm7G_associated_SNPs_13232 0 0 1 0 2 PDCD11 chr10:105182894 5'GT 105182894 Upstream 51bp 12652 chr8 24254873 24254873 1 + G T LUAD 24254874 + 24254854 24254894 41 CCGTCTTTACATCTAACCAGGAGGAACAAGACCCAGCTAAC CCGTCTTTACATCTAACCATGAGGAACAAGACCCAGCTAAC < 41bp 0.502784891661958 0.805624292732256 NA NA prediction 0.605678802140596 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24254874 chr8:24254873 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_13234 0 0 0 0 2 ADAMDEC1 chr8:24254783 3'AG 24254783 Downstream 91bp 12653 chr8 24254873 24254873 1 + G T LUAD 24254874 + 24254854 24254894 41 CCGTCTTTACATCTAACCAGGAGGAACAAGACCCAGCTAAC CCGTCTTTACATCTAACCATGAGGAACAAGACCCAGCTAAC < 41bp 0.502784891661958 0.805624292732256 NA NA prediction 0.605678802140596 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24254874 chr8:24254873 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_13234 0 0 0 0 2 ADAMDEC1 chr8:24254969 5'GT 24254969 Upstream 97bp 12654 chr1 46650034 46650034 1 + G T THYM 46650035 + 46650015 46650055 41 TGGTTTCCTGGGCTGCTATGGTGCTAAGACTGAGAGCAAGT TGGTTTCCTGGGCTGCTATTGTGCTAAGACTGAGAGCAAGT < 41bp 0.49354316162828 0.802816191011164 NA NA prediction 0.605632382022329 Functional Gain - TSPAN1 ENSG00000117472 CDS Human protein_coding chr1:46650035 chr1:46650034 nonsynonymous SNV 0.985 5 20 hm7G_associated_SNPs_13238 0 0 0 0 1 TSPAN1 chr1:46650069 5'GT 46650069 Upstream 36bp 12655 chr3 10088331 10088331 1 + G T UCEC 10088332 + 10088312 10088352 41 ACAAAGAAGTACATTGACAGGGTGCTAAGAAATAAGATTCG ACAAAGAAGTACATTGACATGGTGCTAAGAAATAAGATTCG < 41bp 0.496868204359213 0.802796863349641 NA NA prediction 0.605593726699282 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10088332 chr3:10088331 nonsynonymous SNV 0.465 4 20 hm7G_associated_SNPs_13239 0 0 1 0 2 FANCD2 chr3:10088264 3'AG 10088264 Downstream 68bp 12656 chr3 10088331 10088331 1 + G T UCEC 10088332 + 10088312 10088352 41 ACAAAGAAGTACATTGACAGGGTGCTAAGAAATAAGATTCG ACAAAGAAGTACATTGACATGGTGCTAAGAAATAAGATTCG < 41bp 0.496868204359213 0.802796863349641 NA NA prediction 0.605593726699282 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10088332 chr3:10088331 nonsynonymous SNV 0.465 4 20 hm7G_associated_SNPs_13239 0 0 1 0 2 FANCD2 chr3:10088407 5'GT 10088407 Upstream 77bp 12657 chr1 28891336 28891336 1 + G T COAD 28891337 + 28891317 28891357 41 GGTGGTTTTGGACCAGACAGGCGTGTCTAAGTAAGGCCTTA GGTGGTTTTGGACCAGACATGCGTGTCTAAGTAAGGCCTTA < 41bp 0.505882160170758 0.808677005297606 NA NA prediction 0.605589690253695 Functional Gain - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28891337 chr1:28891336 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_13240 0 0 1 0 1 TRNAU1AP chr1:28891346 5'GT 28891346 Upstream 11bp 12658 chr11 120175896 120175896 1 + G T LGG 120175897 + 120175877 120175917 41 GCCAAGACCTTCAAGCAGAGGCGCATTAAGCTGGGCTTCAC GCCAAGACCTTCAAGCAGATGCGCATTAAGCTGGGCTTCAC < 41bp 0.524841818536224 0.827612635059719 NA NA prediction 0.605541633046989 Functional Gain - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120175897 chr11:120175896 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13242 0 0 0 0 1 POU2F3 chr11:120175921 5'GT 120175921 Upstream 26bp 12659 chr16 20429554 20429554 1 + G T LUSC 20429555 + 20429535 20429575 41 TGGTACTCCCACGGCTCCCGGAGTGGTGGCTGGTCAGTGTG TGGTACTCCCACGGCTCCCTGAGTGGTGGCTGGTCAGTGTG < 41bp 0.524142547110686 0.826906449987788 NA NA prediction 0.605527805754203 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20429555 chr16:20429554 synonymous SNV . 0 20 hm7G_associated_SNPs_13243 0 0 0 0 1 ACSM5 chr16:20429591 5'GT 20429591 Upstream 38bp 12660 chr1 201195181 201195181 1 + G T LUSC 201195182 + 201195162 201195202 41 AATACCACTTCAGGGTGGTGGCCAAGAATGAGCTGGGGGCC AATACCACTTCAGGGTGGTTGCCAAGAATGAGCTGGGGGCC < 41bp 0.511132051701157 0.813893413130131 NA NA prediction 0.605522722857948 Functional Gain - IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201195182 chr1:201195181 synonymous SNV . 0 20 hm7G_associated_SNPs_13244 0 0 0 0 1 IGFN1 chr1:201195251 5'GT 201195251 Upstream 71bp 12661 chr21 33318447 33318447 1 + G T UCEC 33318448 + 33318428 33318468 41 GCACCTGAACTGCTCGCCAGGAAGAAATACGGCCCCAAAAT GCACCTGAACTGCTCGCCATGAAGAAATACGGCCCCAAAAT < 41bp 0.522383941068426 0.82514089528979 NA NA prediction 0.605513908442728 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318448 chr21:33318447 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_13245 0 0 0 0 2 HUNK chr21:33318348 3'AG 33318348 Downstream 100bp 12662 chr21 33318447 33318447 1 + G T UCEC 33318448 + 33318428 33318468 41 GCACCTGAACTGCTCGCCAGGAAGAAATACGGCCCCAAAAT GCACCTGAACTGCTCGCCATGAAGAAATACGGCCCCAAAAT < 41bp 0.522383941068426 0.82514089528979 NA NA prediction 0.605513908442728 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318448 chr21:33318447 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_13245 0 0 0 0 2 HUNK chr21:33318483 5'GT 33318483 Upstream 37bp 12663 chr17 66352880 66352880 1 + G T THCA 66352881 + 66352861 66352901 41 TCAACATTGTGGAGCAGCCGGTGAACTTGAGCAGCCTTGCC TCAACATTGTGGAGCAGCCTGTGAACTTGAGCAGCCTTGCC < 41bp 0.521688945859921 0.824429421458739 NA NA prediction 0.605480951197636 Functional Gain - ARSG ENSG00000141337 CDS Human protein_coding chr17:66352881 chr17:66352880 synonymous SNV . 0 20 hm7G_associated_SNPs_13246 0 0 1 0 2 ARSG chr17:66352808 3'AG 66352808 Downstream 73bp 12664 chr17 66352880 66352880 1 + G T THCA 66352881 + 66352861 66352901 41 TCAACATTGTGGAGCAGCCGGTGAACTTGAGCAGCCTTGCC TCAACATTGTGGAGCAGCCTGTGAACTTGAGCAGCCTTGCC < 41bp 0.521688945859921 0.824429421458739 NA NA prediction 0.605480951197636 Functional Gain - ARSG ENSG00000141337 CDS Human protein_coding chr17:66352881 chr17:66352880 synonymous SNV . 0 20 hm7G_associated_SNPs_13246 0 0 1 0 2 ARSG chr17:66352945 5'GT 66352945 Upstream 66bp 12665 chr5 179021956 179021956 1 + G T UCEC 179021957 + 179021937 179021977 41 TGTCCAGCATGAAACAAATGGAAGAAAGGTAATCACTTCCC TGTCCAGCATGAAACAAATTGAAGAAAGGTAATCACTTCCC < 41bp 0.494754738176394 0.802739024649325 NA NA prediction 0.605478049298649 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179021957 chr5:179021956 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_13247 0 0 1 0 2 RUFY1 chr5:179021867 3'AG 179021867 Downstream 90bp 12666 chr5 179021956 179021956 1 + G T UCEC 179021957 + 179021937 179021977 41 TGTCCAGCATGAAACAAATGGAAGAAAGGTAATCACTTCCC TGTCCAGCATGAAACAAATTGAAGAAAGGTAATCACTTCCC < 41bp 0.494754738176394 0.802739024649325 NA NA prediction 0.605478049298649 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179021957 chr5:179021956 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_13247 0 0 1 0 2 RUFY1 chr5:179021964 5'GT 179021964 Upstream 9bp 12667 chr20 37531399 37531399 1 + G T UCEC 37531400 + 37531380 37531420 41 GCATGATCGCAGCGGGCCAGGACCTGGACTGGATAGATGCC GCATGATCGCAGCGGGCCATGACCTGGACTGGATAGATGCC < 41bp 0.473969386053887 0.802723021766234 NA NA prediction 0.605446043532468 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37531400 chr20:37531399 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_13248 0 0 0 0 2 PPP1R16B chr20:37531311 3'AG 37531311 Downstream 89bp 12668 chr20 37531399 37531399 1 + G T UCEC 37531400 + 37531380 37531420 41 GCATGATCGCAGCGGGCCAGGACCTGGACTGGATAGATGCC GCATGATCGCAGCGGGCCATGACCTGGACTGGATAGATGCC < 41bp 0.473969386053887 0.802723021766234 NA NA prediction 0.605446043532468 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37531400 chr20:37531399 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_13248 0 0 0 0 2 PPP1R16B chr20:37531435 5'GT 37531435 Upstream 37bp 12669 chr19 49713507 49713507 1 + G T SARC 49713508 + 49713488 49713528 41 GGCAACAGCGATCTCTACTGGAAGGCGCAGCGTTACCGCCT GGCAACAGCGATCTCTACTTGAAGGCGCAGCGTTACCGCCT < 41bp 0.520806592502716 0.823505426082531 NA NA prediction 0.60539766715963 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49713508 chr19:49713507 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13249 0 0 0 0 1 TRPM4 chr19:49713466 3'AG 49713466 Downstream 42bp 12670 chr3 38315795 38315795 1 + G T UCEC 38315796 + 38315776 38315816 41 GTGATCGGAAGCACCTGAAGGACACCACACAGTCAGTGTTC GTGATCGGAAGCACCTGAATGACACCACACAGTCAGTGTTC < 41bp 0.527156382067548 0.829846471944387 NA NA prediction 0.605380179753678 Functional Gain - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38315796 chr3:38315795 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_13250 0 0 1 2 2 SLC22A13 chr3:38315763 3'AG 38315763 Downstream 33bp 12671 chr3 38315795 38315795 1 + G T UCEC 38315796 + 38315776 38315816 41 GTGATCGGAAGCACCTGAAGGACACCACACAGTCAGTGTTC GTGATCGGAAGCACCTGAATGACACCACACAGTCAGTGTTC < 41bp 0.527156382067548 0.829846471944387 NA NA prediction 0.605380179753678 Functional Gain - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38315796 chr3:38315795 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_13250 0 0 1 2 2 SLC22A13 chr3:38315866 5'GT 38315866 Upstream 72bp 12672 chr2 79348716 79348716 1 + G T HNSC 79348717 + 79348697 79348737 41 CCCAGACAGAGTTGCCCCAGGCCCGGATCAGCTGCCCAGAA CCCAGACAGAGTTGCCCCATGCCCGGATCAGCTGCCCAGAA < 41bp 0.493323986975059 0.80267798906931 NA NA prediction 0.605355978138619 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348717 chr2:79348716 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_13251 0 0 0 0 2 REG1A chr2:79348688 3'AG 79348688 Downstream 29bp 12673 chr2 79348716 79348716 1 + G T HNSC 79348717 + 79348697 79348737 41 CCCAGACAGAGTTGCCCCAGGCCCGGATCAGCTGCCCAGAA CCCAGACAGAGTTGCCCCATGCCCGGATCAGCTGCCCAGAA < 41bp 0.493323986975059 0.80267798906931 NA NA prediction 0.605355978138619 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348717 chr2:79348716 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_13251 0 0 0 0 2 REG1A chr2:79348806 5'GT 79348806 Upstream 91bp 12674 chr22 39418966 39418966 1 + G T LGG 39418967 + 39418947 39418987 41 AAATCTCCTTTGGGACACAGGGGTCTTTCGAGGCCCGGTAC AAATCTCCTTTGGGACACATGGGTCTTTCGAGGCCCGGTAC < 41bp 0.484936719370173 0.802671846852832 NA NA prediction 0.605343693705664 Functional Gain - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39418967 chr22:39418966 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_13252 0 0 0 0 1 APOBEC3D chr22:39419019 5'GT 39419019 Upstream 54bp 12675 chr12 6837398 6837398 1 + G T LUSC 6837399 + 6837379 6837419 41 TTTTCCCTAGCTGAAGCCCGGAATCTTCCTCCACTAACAGA TTTTCCCTAGCTGAAGCCCTGAATCTTCCTCCACTAACAGA < 41bp 0.517362951949605 0.820034378043436 NA NA prediction 0.605342852187662 Functional Gain - COPS7A ENSG00000111652 CDS Human protein_coding chr12:6837399 chr12:6837398 stopgain 0.983 1 20 hm7G_associated_SNPs_13253 0 0 1 0 2 COPS7A chr12:6837389 3'AG 6837389 Downstream 10bp 12676 chr12 6837398 6837398 1 + G T LUSC 6837399 + 6837379 6837419 41 TTTTCCCTAGCTGAAGCCCGGAATCTTCCTCCACTAACAGA TTTTCCCTAGCTGAAGCCCTGAATCTTCCTCCACTAACAGA < 41bp 0.517362951949605 0.820034378043436 NA NA prediction 0.605342852187662 Functional Gain - COPS7A ENSG00000111652 CDS Human protein_coding chr12:6837399 chr12:6837398 stopgain 0.983 1 20 hm7G_associated_SNPs_13253 0 0 1 0 2 COPS7A chr12:6837477 5'GT 6837477 Upstream 80bp 12677 chr16 16139723 16139723 1 + G T UCEC 16139724 + 16139704 16139744 41 AGTTCGTGAATGACACGAAGGCCCCAGACTGGCAGGGCTAC AGTTCGTGAATGACACGAATGCCCCAGACTGGCAGGGCTAC < 41bp 0.537017221990197 0.839606469345729 NA NA prediction 0.605178494711065 Functional Gain - ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16139724 chr16:16139723 nonsynonymous SNV 0.608 0 20 hm7G_associated_SNPs_13255 0 0 0 0 1 ABCC1 chr16:16139693 3'AG 16139693 Downstream 31bp 12678 chr20 11900381 11900381 1 + G T LUAD 11900382 + 11900362 11900402 41 ACAGTATGTTTTAGCTGTTGGGAGCTCTGTGTTCCATGCGA ACAGTATGTTTTAGCTGTTTGGAGCTCTGTGTTCCATGCGA < 41bp 0.501277589934863 0.803857644256822 NA NA prediction 0.605160108643919 Functional Gain - BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900382 chr20:11900381 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13256 0 0 1 0 1 BTBD3 chr20:11900366 3'AG 11900366 Downstream 16bp 12679 chr20 10030093 10030093 1 + G T SARC 10030094 + 10030074 10030114 41 CGCCCAGGGCTGTGGCTAAGGAAGGCGGCTTCAAAGCAGCA CGCCCAGGGCTGTGGCTAATGAAGGCGGCTTCAAAGCAGCA < 41bp 0.509875913423622 0.812441878837458 NA NA prediction 0.605131930827672 Functional Gain - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10030094 chr20:10030093 nonsynonymous SNV 0.027 2 20 hm7G_associated_SNPs_13257 0 0 0 0 1 ANKEF1 chr20:10030038 3'AG 10030038 Downstream 56bp 12680 chr12 53685788 53685788 1 + G T COAD 53685789 + 53685769 53685809 41 ACTTGCAGAAGCTGCCGTGGGAAAGCATGCCCAGCCTCCAA ACTTGCAGAAGCTGCCGTGTGAAAGCATGCCCAGCCTCCAA < 41bp 0.530362558642589 0.832922498883463 NA NA prediction 0.605119880481747 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685789 chr12:53685788 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13258 0 0 1 0 2 ESPL1 chr12:53685768 3'AG 53685768 Downstream 21bp 12681 chr12 53685788 53685788 1 + G T COAD 53685789 + 53685769 53685809 41 ACTTGCAGAAGCTGCCGTGGGAAAGCATGCCCAGCCTCCAA ACTTGCAGAAGCTGCCGTGTGAAAGCATGCCCAGCCTCCAA < 41bp 0.530362558642589 0.832922498883463 NA NA prediction 0.605119880481747 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53685789 chr12:53685788 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13258 0 0 1 0 2 ESPL1 chr12:53685872 5'GT 53685872 Upstream 85bp 12682 chr18 29099836 29099836 1 + G T LUAD 29099837 + 29099817 29099857 41 GTGCGGCAAAAGCGCGCCTGGATCACCGCCCCCGTGGCTCT GTGCGGCAAAAGCGCGCCTTGATCACCGCCCCCGTGGCTCT < 41bp 0.534349385356731 0.836891630874495 NA NA prediction 0.605084491035529 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099837 chr18:29099836 nonsynonymous SNV 0.944 3 20 hm7G_associated_SNPs_13260 1 0 1 0 2 DSG2 chr18:29099766 3'AG 29099766 Downstream 71bp 12683 chr18 29099836 29099836 1 + G T LUAD 29099837 + 29099817 29099857 41 GTGCGGCAAAAGCGCGCCTGGATCACCGCCCCCGTGGCTCT GTGCGGCAAAAGCGCGCCTTGATCACCGCCCCCGTGGCTCT < 41bp 0.534349385356731 0.836891630874495 NA NA prediction 0.605084491035529 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099837 chr18:29099836 nonsynonymous SNV 0.944 3 20 hm7G_associated_SNPs_13260 1 0 1 0 2 DSG2 chr18:29099900 5'GT 29099900 Upstream 65bp 12684 chr19 50926214 50926214 1 + G T COAD 50926215 + 50926195 50926235 41 CCCCACCTACAGCCCTGCAGGGAACCTCGAACTGGCCCCCA CCCCACCTACAGCCCTGCATGGAACCTCGAACTGGCCCCCA < 41bp 0.535923495916571 0.838462003654552 NA NA prediction 0.605077015475961 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926215 chr19:50926214 nonsynonymous SNV 0.012 2 20 hm7G_associated_SNPs_13261 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 81bp 12685 chr22 44495991 44495991 1 + G T UCEC 44495992 + 44495972 44496012 41 AGGAAGACCCCAAGTTCAAGGAACTGGTCAAGGTAAGGAGC AGGAAGACCCCAAGTTCAATGAACTGGTCAAGGTAAGGAGC < 41bp 0.524132995490375 0.826659096139468 NA NA prediction 0.605052201298186 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44495992 chr22:44495991 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13262 0 0 0 0 2 PARVB chr22:44495933 3'AG 44495933 Downstream 59bp 12686 chr22 44495991 44495991 1 + G T UCEC 44495992 + 44495972 44496012 41 AGGAAGACCCCAAGTTCAAGGAACTGGTCAAGGTAAGGAGC AGGAAGACCCCAAGTTCAATGAACTGGTCAAGGTAAGGAGC < 41bp 0.524132995490375 0.826659096139468 NA NA prediction 0.605052201298186 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44495992 chr22:44495991 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13262 0 0 0 0 2 PARVB chr22:44496003 5'GT 44496003 Upstream 13bp 12687 chr4 4317667 4317667 1 + G T LUAD 4317668 + 4317648 4317688 41 GCACAGAATTCGGCACACGGGGGAGCGGCCTTACAGCTGCT GCACAGAATTCGGCACACGTGGGAGCGGCCTTACAGCTGCT < 41bp 0.522412881150821 0.82491067521587 NA NA prediction 0.604995588130098 Functional Gain - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4317668 chr4:4317667 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13263 0 0 0 0 1 ZBTB49 chr4:4317697 5'GT 4317697 Upstream 31bp 12688 chr1 203036858 203036858 1 + G T CESC 203036859 + 203036839 203036879 41 GGCATCATGTGTCTGAAGAGGCTGAATTATGACCGGAAGGA GGCATCATGTGTCTGAAGATGCTGAATTATGACCGGAAGGA < 41bp 0.48737227803738 0.802472587177886 NA NA prediction 0.604945174355773 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203036859 chr1:203036858 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13264 0 0 1 0 1 PPFIA4 chr1:203036823 3'AG 203036823 Downstream 36bp 12689 chr15 91433094 91433094 1 + G T UCEC 91433095 + 91433075 91433115 41 CCTCAGTGACAGATGAGCTGGCTGTGGCCACCGAGATGGTG CCTCAGTGACAGATGAGCTTGCTGTGGCCACCGAGATGGTG < 41bp 0.471263738665551 0.802471152527384 NA NA prediction 0.604942305054768 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91433095 chr15:91433094 synonymous SNV . 0 20 hm7G_associated_SNPs_13265 0 0 1 0 2 FES chr15:91433070 3'AG 91433070 Downstream 25bp 12690 chr15 91433094 91433094 1 + G T UCEC 91433095 + 91433075 91433115 41 CCTCAGTGACAGATGAGCTGGCTGTGGCCACCGAGATGGTG CCTCAGTGACAGATGAGCTTGCTGTGGCCACCGAGATGGTG < 41bp 0.471263738665551 0.802471152527384 NA NA prediction 0.604942305054768 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91433095 chr15:91433094 synonymous SNV . 0 20 hm7G_associated_SNPs_13265 0 0 1 0 2 FES chr15:91433192 5'GT 91433192 Upstream 99bp 12691 chr11 46747450 46747450 1 + G T STAD 46747451 + 46747431 46747471 41 GATGACTCCACGCTCCGAAGGCTCCAGTGTGAATCTGTCAC GATGACTCCACGCTCCGAATGCTCCAGTGTGAATCTGTCAC < 41bp 0.485944263192406 0.802466300704829 NA NA prediction 0.604932601409658 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46747451 chr11:46747450 nonsynonymous SNV 0.013 3 20 hm7G_associated_SNPs_13266 0 0 1 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 42bp 12692 chr19 17877562 17877562 1 + G T COAD 17877563 + 17877543 17877583 41 AACTGACACGGAAGTTACAGGATCTCATCAAGGACGTTCTC AACTGACACGGAAGTTACATGATCTCATCAAGGACGTTCTC < 41bp 0.486499379540472 0.802465724127022 NA NA prediction 0.604931448254044 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17877563 chr19:17877562 nonsynonymous SNV 0.954 0 20 hm7G_associated_SNPs_13267 0 0 0 0 2 FCHO1 chr19:17877478 3'AG 17877478 Downstream 85bp 12693 chr19 17877562 17877562 1 + G T COAD 17877563 + 17877543 17877583 41 AACTGACACGGAAGTTACAGGATCTCATCAAGGACGTTCTC AACTGACACGGAAGTTACATGATCTCATCAAGGACGTTCTC < 41bp 0.486499379540472 0.802465724127022 NA NA prediction 0.604931448254044 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17877563 chr19:17877562 nonsynonymous SNV 0.954 0 20 hm7G_associated_SNPs_13267 0 0 0 0 2 FCHO1 chr19:17877619 5'GT 17877619 Upstream 58bp 12694 chr1 156347929 156347929 1 + G T COAD 156347930 + 156347910 156347950 41 TGTGCTCCTTCATCTCCTGGGGGTGAGAGTCTGGGGAGGGA TGTGCTCCTTCATCTCCTGTGGGTGAGAGTCTGGGGAGGGA < 41bp 0.482358578898405 0.802436437590876 NA NA prediction 0.604872875181753 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347930 chr1:156347929 nonsynonymous SNV 0.297 3 20 hm7G_associated_SNPs_13269 0 0 1 0 1 RHBG chr1:156347931 5'GT 156347931 Upstream 3bp 12695 chr13 113740555 113740555 1 + G T LUSC 113740556 + 113740536 113740576 41 GCACCTCATCGCTATCACCGGCTATGACGTAAGGCGCCCAG GCACCTCATCGCTATCACCTGCTATGACGTAAGGCGCCCAG < 41bp 0.478840502230711 0.802383658707608 NA NA prediction 0.604767317415216 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113740556 chr13:113740555 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13272 0 0 1 0 1 MCF2L chr13:113740563 5'GT 113740563 Upstream 9bp 12696 chr10 134013933 134013933 1 + G T READ 134013934 + 134013914 134013954 41 ACTACTGGAGCAAGAACTGGGCCAAGGCCGCAGCCTTCGTC ACTACTGGAGCAAGAACTGTGCCAAGGCCGCAGCCTTCGTC < 41bp 0.542702525338222 0.845071729780595 NA NA prediction 0.604738408884746 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134013934 chr10:134013933 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_13273 0 0 0 0 2 DPYSL4 chr10:134013860 3'AG 134013860 Downstream 74bp 12697 chr10 134013933 134013933 1 + G T READ 134013934 + 134013914 134013954 41 ACTACTGGAGCAAGAACTGGGCCAAGGCCGCAGCCTTCGTC ACTACTGGAGCAAGAACTGTGCCAAGGCCGCAGCCTTCGTC < 41bp 0.542702525338222 0.845071729780595 NA NA prediction 0.604738408884746 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134013934 chr10:134013933 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_13273 0 0 0 0 2 DPYSL4 chr10:134014016 5'GT 134014016 Upstream 84bp 12698 chr10 43615153 43615153 1 + G T LUSC 43615154 + 43615134 43615174 41 GACCTCATCTCATTTGCCTGGCAGATCTCACAGGGGATGCA GACCTCATCTCATTTGCCTTGCAGATCTCACAGGGGATGCA < 41bp 0.534245337893753 0.836592893642542 NA NA prediction 0.604695111497578 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43615154 chr10:43615153 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13274 0 0 0 0 1 RET chr10:43615193 5'GT 43615193 Upstream 41bp 12699 chr2 7137077 7137077 1 + G T LUSC 7137078 + 7137058 7137098 41 ATGACCACAACAAGGTACCGGCCCACCTGGGACCTGGCCCT ATGACCACAACAAGGTACCTGCCCACCTGGGACCTGGCCCT < 41bp 0.486108626677753 0.802327114143345 NA NA prediction 0.604654228286689 Functional Gain - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7137078 chr2:7137077 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13276 0 0 1 0 1 RNF144A chr2:7137047 3'AG 7137047 Downstream 31bp 12700 chr19 7927363 7927363 1 + G T COAD 7927364 + 7927344 7927384 41 ACCTGGCTGCACAGAACAAGGGGCTGCAGACGCAGCTCAGC ACCTGGCTGCACAGAACAATGGGCTGCAGACGCAGCTCAGC < 41bp 0.545437997067773 0.847755156456003 NA NA prediction 0.604634318776461 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7927364 chr19:7927363 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_13277 0 0 0 0 2 EVI5L chr19:7927274 3'AG 7927274 Downstream 90bp 12701 chr19 7927363 7927363 1 + G T COAD 7927364 + 7927344 7927384 41 ACCTGGCTGCACAGAACAAGGGGCTGCAGACGCAGCTCAGC ACCTGGCTGCACAGAACAATGGGCTGCAGACGCAGCTCAGC < 41bp 0.545437997067773 0.847755156456003 NA NA prediction 0.604634318776461 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7927364 chr19:7927363 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_13277 0 0 0 0 2 EVI5L chr19:7927420 5'GT 7927420 Upstream 58bp 12702 chrX 49105177 49105177 1 + G T UCEC 49105178 + 49105158 49105198 41 AAGAGGCCCGCAGGAAGGAGGAGGTCTATAAGCAGCTGGTA AAGAGGCCCGCAGGAAGGATGAGGTCTATAAGCAGCTGGTA < 41bp 0.523128881867889 0.825435901440404 NA NA prediction 0.60461403914503 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105178 chrX:49105177 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_13279 0 0 0 0 2 CCDC22 chrX:49105094 3'AG 49105094 Downstream 84bp 12703 chrX 49105177 49105177 1 + G T UCEC 49105178 + 49105158 49105198 41 AAGAGGCCCGCAGGAAGGAGGAGGTCTATAAGCAGCTGGTA AAGAGGCCCGCAGGAAGGATGAGGTCTATAAGCAGCTGGTA < 41bp 0.523128881867889 0.825435901440404 NA NA prediction 0.60461403914503 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49105178 chrX:49105177 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_13279 0 0 0 0 2 CCDC22 chrX:49105195 5'GT 49105195 Upstream 19bp 12704 chr22 39387593 39387593 1 + G T LUAD 39387594 + 39387574 39387614 41 GAGGCGCTGCAAATGCTGCGGGATGCTGGGGCCCAAGTCTC GAGGCGCTGCAAATGCTGCTGGATGCTGGGGCCCAAGTCTC < 41bp 0.490688867216634 0.802286533111823 NA NA prediction 0.604573066223647 Functional Gain - APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39387594 chr22:39387593 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_13281 0 0 0 0 1 APOBEC3B chr22:39387631 5'GT 39387631 Upstream 39bp 12705 chr19 14024105 14024105 1 + G T HNSC 14024106 + 14024086 14024126 41 AAGATGCGGCGCTACGATCGGGGGCTTAAAGTAAGTGGGCA AAGATGCGGCGCTACGATCTGGGGCTTAAAGTAAGTGGGCA < 41bp 0.522296484962889 0.824576625612558 NA NA prediction 0.604560281299337 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024106 chr19:14024105 nonsynonymous SNV 0.159 4 20 hm7G_associated_SNPs_13282 0 0 1 0 1 CC2D1A chr19:14024115 5'GT 14024115 Upstream 11bp 12706 chr3 38048114 38048114 1 + G T GBM 38048115 + 38048095 38048135 41 CACCAGCGCCACGATCAACGGGGGCCTGCGCCGGGAACAAC CACCAGCGCCACGATCAACTGGGGCCTGCGCCGGGAACAAC < 41bp 0.533286911903188 0.835548227959698 NA NA prediction 0.60452263211302 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38048115 chr3:38048114 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_13283 0 0 0 0 1 VILL chr3:38048191 5'GT 38048191 Upstream 78bp 12707 chr1 206328970 206328970 1 + G T COAD 206328971 + 206328951 206328991 41 TTGGGTTTTAGTATGCTGTGGAGTGTGCCAACCTTAACGTC TTGGGTTTTAGTATGCTGTTGAGTGTGCCAACCTTAACGTC < 41bp 0.505729452064659 0.80798482103575 NA NA prediction 0.604510737942183 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206328971 chr1:206328970 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_13284 0 0 0 0 2 CTSE chr1:206328962 3'AG 206328962 Downstream 9bp 12708 chr1 206328970 206328970 1 + G T COAD 206328971 + 206328951 206328991 41 TTGGGTTTTAGTATGCTGTGGAGTGTGCCAACCTTAACGTC TTGGGTTTTAGTATGCTGTTGAGTGTGCCAACCTTAACGTC < 41bp 0.505729452064659 0.80798482103575 NA NA prediction 0.604510737942183 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206328971 chr1:206328970 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_13284 0 0 0 0 2 CTSE chr1:206329060 5'GT 206329060 Upstream 91bp 12709 chr12 65082037 65082037 1 + G T UCEC 65082038 + 65082018 65082058 41 GCTTCATTAAAGTACAGATGGAACTCTGCAAACCTCCACAG GCTTCATTAAAGTACAGATTGAACTCTGCAAACCTCCACAG < 41bp 0.51862522194754 0.820870033051748 NA NA prediction 0.604489622208416 Functional Gain - RASSF3 ENSG00000153179 CDS Human protein_coding chr12:65082038 chr12:65082037 nonsynonymous SNV 0.929 2 20 hm7G_associated_SNPs_13285 0 0 1 0 1 RASSF3 chr12:65081996 3'AG 65081996 Downstream 42bp 12710 chr17 7942733 7942733 1 + G T UCEC 7942734 + 7942714 7942754 41 TCCAGGTGACGCTCCCGGAGGACGTAGGCCGAGTGCTGCTG TCCAGGTGACGCTCCCGGATGACGTAGGCCGAGTGCTGCTG < 41bp 0.515663723452572 0.817888364492187 NA NA prediction 0.604449282079229 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7942734 chr17:7942733 nonsynonymous SNV 0.478 0 20 hm7G_associated_SNPs_13286 0 0 0 0 1 ALOX15B chr17:7942704 3'AG 7942704 Downstream 30bp 12711 chr7 66240235 66240235 1 + G T UCEC 66240236 + 66240216 66240256 41 TCCAGCGGGAGGAAGAAGAGGCCTTTGCCAGCAGTCAGAGC TCCAGCGGGAGGAAGAAGATGCCTTTGCCAGCAGTCAGAGC < 41bp 0.478582446213215 0.802218523709973 NA NA prediction 0.604437047419947 Functional Gain - RABGEF1 ENSG00000154710;ENSG00000243335 CDS Human other chr7:66240236 chr7:66240235 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_13288 0 0 1 0 1 RABGEF1 chr7:66240214 3'AG 66240214 Downstream 22bp 12712 chr4 110431204 110431204 1 + G T COAD 110431205 + 110431185 110431225 41 CAAATATTCCACAGACACAGGCTTTACTGAATAAAGCTAAG CAAATATTCCACAGACACATGCTTTACTGAATAAAGCTAAG < 41bp 0.514063889867094 0.816266167168635 NA NA prediction 0.604404554603082 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110431205 chr4:110431204 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13290 0 0 1 0 2 SEC24B chr4:110431165 3'AG 110431165 Downstream 40bp 12713 chr4 110431204 110431204 1 + G T COAD 110431205 + 110431185 110431225 41 CAAATATTCCACAGACACAGGCTTTACTGAATAAAGCTAAG CAAATATTCCACAGACACATGCTTTACTGAATAAAGCTAAG < 41bp 0.514063889867094 0.816266167168635 NA NA prediction 0.604404554603082 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110431205 chr4:110431204 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13290 0 0 1 0 2 SEC24B chr4:110431267 5'GT 110431267 Upstream 64bp 12714 chr19 17533142 17533142 1 + G T UCEC 17533143 + 17533123 17533163 41 CCTACCCCCCACTCCCAGAGGCCTCTGTGTCCAAGAAGAAA CCTACCCCCCACTCCCAGATGCCTCTGTGTCCAAGAAGAAA < 41bp 0.534627088225338 0.836814915723404 NA NA prediction 0.604375654996131 Functional Gain - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17533143 chr19:17533142 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_13291 0 0 1 0 1 MVB12A chr19:17533141 3'AG 17533141 Downstream 2bp 12715 chr8 70539523 70539523 1 + G T UCEC 70539524 + 70539504 70539544 41 GAGCGTGGAAGGACCATAAGGCATACATTGACAAAGAGGTT GAGCGTGGAAGGACCATAATGCATACATTGACAAAGAGGTT < 41bp 0.501068241282421 0.803224767858532 NA NA prediction 0.604313053152222 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70539524 chr8:70539523 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_13293 0 0 0 0 2 SULF1 chr8:70539445 3'AG 70539445 Downstream 79bp 12716 chr8 70539523 70539523 1 + G T UCEC 70539524 + 70539504 70539544 41 GAGCGTGGAAGGACCATAAGGCATACATTGACAAAGAGGTT GAGCGTGGAAGGACCATAATGCATACATTGACAAAGAGGTT < 41bp 0.501068241282421 0.803224767858532 NA NA prediction 0.604313053152222 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70539524 chr8:70539523 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_13293 0 0 0 0 2 SULF1 chr8:70539541 5'GT 70539541 Upstream 19bp 12717 chrX 130219991 130219991 1 + G T BRCA 130219992 + 130219972 130220012 41 AGTCCAGGAAAACAAAGCTGGGGATTGATCACTATGTTGCT AGTCCAGGAAAACAAAGCTTGGGATTGATCACTATGTTGCT < 41bp 0.486128937047776 0.802155033285335 NA NA prediction 0.604310066570669 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219992 chrX:130219991 synonymous SNV . 0 20 hm7G_associated_SNPs_13294 0 0 0 0 1 ARHGAP36 chrX:130220063 5'GT 130220063 Upstream 73bp 12718 chr5 634040 634040 1 + G T UCEC 634041 + 634021 634061 41 TCAGCCAGAAGGGGCGTGAGGCCGACTCTCGTGGTTCCCAA TCAGCCAGAAGGGGCGTGATGCCGACTCTCGTGGTTCCCAA < 41bp 0.491151311890399 0.802140457873627 NA NA prediction 0.604280915747255 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:634041 chr5:634040 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_13295 0 0 1 0 1 CEP72 chr5:634062 5'GT 634062 Upstream 23bp 12719 chr2 46587819 46587819 1 + G T KIRC 46587820 + 46587800 46587840 41 AAAGACATGTCCACAGAGCGGGACTTCTTCATGAGGATGAA AAAGACATGTCCACAGAGCTGGACTTCTTCATGAGGATGAA < 41bp 0.533848892272872 0.835981316401506 NA NA prediction 0.604264848257268 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46587820 chr2:46587819 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_13296 0 0 1 0 2 EPAS1 chr2:46587777 3'AG 46587777 Downstream 43bp 12720 chr2 46587819 46587819 1 + G T KIRC 46587820 + 46587800 46587840 41 AAAGACATGTCCACAGAGCGGGACTTCTTCATGAGGATGAA AAAGACATGTCCACAGAGCTGGACTTCTTCATGAGGATGAA < 41bp 0.533848892272872 0.835981316401506 NA NA prediction 0.604264848257268 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46587820 chr2:46587819 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_13296 0 0 1 0 2 EPAS1 chr2:46587895 5'GT 46587895 Upstream 77bp 12721 chr9 2191331 2191331 1 + G T STAD 2191332 + 2191312 2191352 41 AGGCCGGGACAAAGGGAAAGGCAAGAAAAGGCCAAATCGAG AGGCCGGGACAAAGGGAAATGCAAGAAAAGGCCAAATCGAG < 41bp 0.508341302009636 0.810464936121828 NA NA prediction 0.604247268224383 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2191332 chr9:2191331 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_13297 0 0 1 0 2 SMARCA2 chr9:2191266 3'AG 2191266 Downstream 66bp 12722 chr9 2191331 2191331 1 + G T STAD 2191332 + 2191312 2191352 41 AGGCCGGGACAAAGGGAAAGGCAAGAAAAGGCCAAATCGAG AGGCCGGGACAAAGGGAAATGCAAGAAAAGGCCAAATCGAG < 41bp 0.508341302009636 0.810464936121828 NA NA prediction 0.604247268224383 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2191332 chr9:2191331 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_13297 0 0 1 0 2 SMARCA2 chr9:2191408 5'GT 2191408 Upstream 78bp 12723 chr20 44521859 44521859 1 + G T LUAD 44521860 + 44521840 44521880 41 CACCCTGGGTGTTTCACAGGGGCTGGCTGTGGGCAATGGAC CACCCTGGGTGTTTCACAGTGGCTGGCTGTGGGCAATGGAC < 41bp 0.534932482611342 0.837040564046323 NA NA prediction 0.604216162869964 Functional Gain - CTSA ENSG00000064601 CDS Human protein_coding chr20:44521860 chr20:44521859 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13298 0 0 1 0 2 CTSA chr20:44521859 3'AG 44521859 Downstream 1bp 12724 chr20 44521859 44521859 1 + G T LUAD 44521860 + 44521840 44521880 41 CACCCTGGGTGTTTCACAGGGGCTGGCTGTGGGCAATGGAC CACCCTGGGTGTTTCACAGTGGCTGGCTGTGGGCAATGGAC < 41bp 0.534932482611342 0.837040564046323 NA NA prediction 0.604216162869964 Functional Gain - CTSA ENSG00000064601 CDS Human protein_coding chr20:44521860 chr20:44521859 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13298 0 0 1 0 2 CTSA chr20:44521950 5'GT 44521950 Upstream 92bp 12725 chr1 47282730 47282730 1 + G T LUAD 47282731 + 47282711 47282751 41 TGCTGGCAGGGATGATCTGGGCAAAATGACTTATCTGACCA TGCTGGCAGGGATGATCTGTGCAAAATGACTTATCTGACCA < 41bp 0.50857191215834 0.810670390925614 NA NA prediction 0.604196957534547 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47282731 chr1:47282730 nonsynonymous SNV 0.890 3 20 hm7G_associated_SNPs_13300 0 0 0 0 1 CYP4B1 chr1:47282720 3'AG 47282720 Downstream 11bp 12726 chr16 89644027 89644027 1 + G T UCEC 89644028 + 89644008 89644048 41 TGGACTACTACTTCGAGGAGGTGCAGAGGCTGCGCTTTGAG TGGACTACTACTTCGAGGATGTGCAGAGGCTGCGCTTTGAG < 41bp 0.49137959578562 0.802095782930797 NA NA prediction 0.604191565861594 Functional Gain - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89644028 chr16:89644027 nonsynonymous SNV 0.613 2 20 hm7G_associated_SNPs_13301 0 0 0 0 1 CPNE7 chr16:89643947 3'AG 89643947 Downstream 81bp 12727 chr7 149547309 149547309 1 + G T UCEC 149547310 + 149547290 149547330 41 TGTTTGAGGAGCTGCCGGTGGTGTTCGAGGATGTGGCAGTG TGTTTGAGGAGCTGCCGGTTGTGTTCGAGGATGTGGCAGTG < 41bp 0.524890935973131 0.826971844379588 NA NA prediction 0.604161816812914 Functional Gain - ZNF862 ENSG00000106479 CDS Human protein_coding chr7:149547310 chr7:149547309 synonymous SNV . 0 20 hm7G_associated_SNPs_13302 0 0 0 0 1 ZNF862 chr7:149547250 3'AG 149547250 Downstream 60bp 12728 chr21 45542167 45542167 1 + G T LGG 45542168 + 45542148 45542188 41 TGCAGACGGGCTCCATTGAGGGCAGGCATGACCTCAAGACT TGCAGACGGGCTCCATTGATGGCAGGCATGACCTCAAGACT < 41bp 0.480343040303393 0.802053159426698 NA NA prediction 0.604106318853395 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45542168 chr21:45542167 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_13304 0 0 1 0 1 PWP2 chr21:45542238 5'GT 45542238 Upstream 72bp 12729 chr1 53072440 53072440 1 + G T UCEC 53072441 + 53072421 53072461 41 GCAGCTGCAGCGAGACCTGGGCCCCCACCACTTTAACGTGC GCAGCTGCAGCGAGACCTGTGCCCCCACCACTTTAACGTGC < 41bp 0.533229329724366 0.835274252339031 NA NA prediction 0.60408984522933 Functional Gain - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53072441 chr1:53072440 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13305 0 0 0 0 1 GPX7 chr1:53072356 3'AG 53072356 Downstream 85bp 12730 chr5 10450185 10450185 1 + G T LUSC 10450186 + 10450166 10450206 41 TGTGAAAACAAAATCAAGTGGATAAACTTTTTAGCGCTTGG TGTGAAAACAAAATCAAGTTGATAAACTTTTTAGCGCTTGG < 41bp 0.51323087353568 0.815272426130989 NA NA prediction 0.604083105190618 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10450186 chr5:10450185 nonsynonymous SNV 0.859 4 20 hm7G_associated_SNPs_13306 0 0 0 0 1 ROPN1L chr5:10450225 5'GT 10450225 Upstream 41bp 12731 chrX 153537788 153537788 1 + G T UCEC 153537789 + 153537769 153537809 41 ACTGGCAAGTACTTCGACAGGGCCAGGTGAGGTTCTTCCCC ACTGGCAAGTACTTCGACATGGCCAGGTGAGGTTCTTCCCC < 41bp 0.524780805708909 0.826800173970606 NA NA prediction 0.604038736523394 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153537789 chrX:153537788 nonsynonymous SNV 0.790 3 20 hm7G_associated_SNPs_13308 0 0 0 0 2 TKTL1 chrX:153537697 3'AG 153537697 Downstream 92bp 12732 chrX 153537788 153537788 1 + G T UCEC 153537789 + 153537769 153537809 41 ACTGGCAAGTACTTCGACAGGGCCAGGTGAGGTTCTTCCCC ACTGGCAAGTACTTCGACATGGCCAGGTGAGGTTCTTCCCC < 41bp 0.524780805708909 0.826800173970606 NA NA prediction 0.604038736523394 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153537789 chrX:153537788 nonsynonymous SNV 0.790 3 20 hm7G_associated_SNPs_13308 0 0 0 0 2 TKTL1 chrX:153537794 5'GT 153537794 Upstream 7bp 12733 chr14 104136555 104136555 1 + G T HNSC 104136556 + 104136536 104136576 41 TAACCTTGCAGTCCTTTATGGTAAAAGAGGGAAGTACAAAG TAACCTTGCAGTCCTTTATTGTAAAAGAGGGAAGTACAAAG < 41bp 0.501129542305525 0.80309091890733 NA NA prediction 0.60392275320361 Functional Gain - KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104136556 chr14:104136555 nonsynonymous SNV 0.981 5 20 hm7G_associated_SNPs_13310 0 0 1 0 2 KLC1 chr14:104136519 3'AG 104136519 Downstream 37bp 12734 chr14 104136555 104136555 1 + G T HNSC 104136556 + 104136536 104136576 41 TAACCTTGCAGTCCTTTATGGTAAAAGAGGGAAGTACAAAG TAACCTTGCAGTCCTTTATTGTAAAAGAGGGAAGTACAAAG < 41bp 0.501129542305525 0.80309091890733 NA NA prediction 0.60392275320361 Functional Gain - KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104136556 chr14:104136555 nonsynonymous SNV 0.981 5 20 hm7G_associated_SNPs_13310 0 0 1 0 2 KLC1 chr14:104136620 5'GT 104136620 Upstream 66bp 12735 chr17 7851959 7851959 1 + G T rs146028734 7851960 + 7851940 7851980 41 ACAAGCCTGGGAGGAAGGAGGAAGGATTCTCCGGGTGGAAG ACAAGCCTGGGAGGAAGGATGAAGGATTCTCCGGGTGGAAG < 41bp 0.509818511027381 0.811777342345688 NA NA prediction 0.603917662636615 Functional Gain - CNTROB ENSG00000170037 CDS Human protein_coding chr17:7851960 chr17:7851959 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_13311 0 0 1 0 1 CNTROB chr17:7852003 5'GT 7852003 Upstream 45bp 12736 chr15 39882744 39882744 1 + G T COAD 39882745 + 39882725 39882765 41 CCCCAACCTTCCCAACTCAGGGCAGGAAGACTATGACAAGG CCCCAACCTTCCCAACTCATGGCAGGAAGACTATGACAAGG < 41bp 0.485790412591353 0.801955213686388 NA NA prediction 0.603910427372776 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39882745 chr15:39882744 nonsynonymous SNV 0.921 4 20 hm7G_associated_SNPs_13312 0 0 1 0 1 THBS1 chr15:39882717 3'AG 39882717 Downstream 28bp 12737 chr19 13941063 13941063 1 + G T COAD 13941064 + 13941044 13941084 41 CCTTATTCACACCAGTGGAGGCGGCTACCATCGTGGCAGTG CCTTATTCACACCAGTGGATGCGGCTACCATCGTGGCAGTG < 41bp 0.497888250450352 0.801917257694513 NA NA prediction 0.603834515389027 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13941064 chr19:13941063 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_13314 0 0 0 0 1 ZSWIM4 chr19:13941005 3'AG 13941005 Downstream 59bp 12738 chr1 178745915 178745915 1 + G T LIHC 178745916 + 178745896 178745936 41 AAGCATGGACCTAATGAACGGGCAGGCAAGCAGTGTCAATA AAGCATGGACCTAATGAACTGGCAGGCAAGCAGTGTCAATA < 41bp 0.501154483555001 0.803070552159359 NA NA prediction 0.603832137208715 Functional Gain - RALGPS2 ENSG00000116191 CDS Human protein_coding chr1:178745916 chr1:178745915 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13315 0 0 1 0 2 RALGPS2 chr1:178745817 3'AG 178745817 Downstream 99bp 12739 chr1 178745915 178745915 1 + G T LIHC 178745916 + 178745896 178745936 41 AAGCATGGACCTAATGAACGGGCAGGCAAGCAGTGTCAATA AAGCATGGACCTAATGAACTGGCAGGCAAGCAGTGTCAATA < 41bp 0.501154483555001 0.803070552159359 NA NA prediction 0.603832137208715 Functional Gain - RALGPS2 ENSG00000116191 CDS Human protein_coding chr1:178745916 chr1:178745915 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13315 0 0 1 0 2 RALGPS2 chr1:178745956 5'GT 178745956 Upstream 42bp 12740 chr12 3659196 3659196 1 + G T COAD 3659197 + 3659177 3659217 41 AAAGTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTTTC AAAGTGGTACTGGATGTGGTGAGTGGTACTGGGATCCTTTC < 41bp 0.519031548896336 0.820942854219036 NA NA prediction 0.603822610645399 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3659197 chr12:3659196 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_13317 0 0 0 0 2 PRMT8 chr12:3659102 3'AG 3659102 Downstream 95bp 12741 chr12 3659196 3659196 1 + G T COAD 3659197 + 3659177 3659217 41 AAAGTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTTTC AAAGTGGTACTGGATGTGGTGAGTGGTACTGGGATCCTTTC < 41bp 0.519031548896336 0.820942854219036 NA NA prediction 0.603822610645399 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3659197 chr12:3659196 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_13317 0 0 0 0 2 PRMT8 chr12:3659257 5'GT 3659257 Upstream 62bp 12742 chr22 40804304 40804304 1 + G T UCEC 40804305 + 40804285 40804325 41 CCATCGCGGGGGATGACTCGGTGACGGAGGGGGTCACAGAC CCATCGCGGGGGATGACTCTGTGACGGAGGGGGTCACAGAC < 41bp 0.511483256632036 0.813393716350172 NA NA prediction 0.603820919436272 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40804305 chr22:40804304 synonymous SNV . 0 20 hm7G_associated_SNPs_13318 0 0 1 0 1 SGSM3 chr22:40804281 3'AG 40804281 Downstream 24bp 12743 chr6 26505247 26505247 1 + G T UCEC 26505248 + 26505228 26505268 41 GATGGTACCCAGAGCCCCAGGTGCAGTGGAGAACTTCCAAG GATGGTACCCAGAGCCCCATGTGCAGTGGAGAACTTCCAAG < 41bp 0.493882175727903 0.80189635312694 NA NA prediction 0.60379270625388 Functional Gain - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26505248 chr6:26505247 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_13319 0 0 0 0 1 BTN1A1 chr6:26505153 3'AG 26505153 Downstream 95bp 12744 chrX 48457770 48457770 1 + G T LUAD 48457771 + 48457751 48457791 41 ATGATCCTCGGGCCCTGGGGGCCCGTGGGCACCGTCGTTCT ATGATCCTCGGGCCCTGGGTGCCCGTGGGCACCGTCGTTCT < 41bp 0.526231670229652 0.82811765203443 NA NA prediction 0.603771963609556 Functional Gain - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48457771 chrX:48457770 synonymous SNV . 0 20 hm7G_associated_SNPs_13321 0 0 1 0 1 WDR13 chrX:48457850 5'GT 48457850 Upstream 81bp 12745 chr10 104232691 104232691 1 + G T THCA 104232692 + 104232672 104232712 41 ACCATATCTCCCTTTCCACGGGCTCCATCCTGTTGGGTGAG ACCATATCTCCCTTTCCACTGGCTCCATCCTGTTGGGTGAG < 41bp 0.53815514864664 0.840019477183412 NA NA prediction 0.603728657073544 Functional Gain - MFSD13A ENSG00000138111 CDS Human protein_coding chr10:104232692 chr10:104232691 synonymous SNV . 0 20 hm7G_associated_SNPs_13322 0 0 1 0 2 MFSD13A chr10:104232611 3'AG 104232611 Downstream 81bp 12746 chr10 104232691 104232691 1 + G T THCA 104232692 + 104232672 104232712 41 ACCATATCTCCCTTTCCACGGGCTCCATCCTGTTGGGTGAG ACCATATCTCCCTTTCCACTGGCTCCATCCTGTTGGGTGAG < 41bp 0.53815514864664 0.840019477183412 NA NA prediction 0.603728657073544 Functional Gain - MFSD13A ENSG00000138111 CDS Human protein_coding chr10:104232692 chr10:104232691 synonymous SNV . 0 20 hm7G_associated_SNPs_13322 0 0 1 0 2 MFSD13A chr10:104232707 5'GT 104232707 Upstream 17bp 12747 chr16 67036993 67036993 1 + G T TGCT 67036994 + 67036974 67037014 41 TGATGTCACCCCTAGCCTCGGGTCTCTTCCATCGGGCCATT TGATGTCACCCCTAGCCTCTGGTCTCTTCCATCGGGCCATT < 41bp 0.472020898922563 0.801847951363343 NA NA prediction 0.603695902726686 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67036994 chr16:67036993 synonymous SNV . 0 20 hm7G_associated_SNPs_13323 0 0 0 0 2 CES4A chr16:67036973 3'AG 67036973 Downstream 21bp 12748 chr16 67036993 67036993 1 + G T TGCT 67036994 + 67036974 67037014 41 TGATGTCACCCCTAGCCTCGGGTCTCTTCCATCGGGCCATT TGATGTCACCCCTAGCCTCTGGTCTCTTCCATCGGGCCATT < 41bp 0.472020898922563 0.801847951363343 NA NA prediction 0.603695902726686 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67036994 chr16:67036993 synonymous SNV . 0 20 hm7G_associated_SNPs_13323 0 0 0 0 2 CES4A chr16:67037077 5'GT 67037077 Upstream 85bp 12749 chr12 120106147 120106147 1 + G T UCEC 120106148 + 120106128 120106168 41 GGCACCAAGGACGGGGACAGGCCCAAGATCCTGATGGACAG GGCACCAAGGACGGGGACATGCCCAAGATCCTGATGGACAG < 41bp 0.499070704757998 0.801839259903209 NA NA prediction 0.603678519806418 Functional Gain - PRKAB1 ENSG00000111725 CDS Human protein_coding chr12:120106148 chr12:120106147 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13324 0 0 0 0 1 PRKAB1 chr12:120106208 5'GT 120106208 Upstream 62bp 12750 chr16 89259935 89259935 1 + G T LUSC 89259936 + 89259916 89259956 41 AAGCAGTCTCGGGGCAAGGGGCTGCTGCACGGCCCCCAGGA AAGCAGTCTCGGGGCAAGGTGCTGCTGCACGGCCCCCAGGA < 41bp 0.531383385875071 0.833205582511176 NA NA prediction 0.603644393272209 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89259936 chr16:89259935 nonsynonymous SNV 0.037 1 20 hm7G_associated_SNPs_13326 0 0 0 0 2 CDH15 chr16:89259878 3'AG 89259878 Downstream 58bp 12751 chr16 89259935 89259935 1 + G T LUSC 89259936 + 89259916 89259956 41 AAGCAGTCTCGGGGCAAGGGGCTGCTGCACGGCCCCCAGGA AAGCAGTCTCGGGGCAAGGTGCTGCTGCACGGCCCCCAGGA < 41bp 0.531383385875071 0.833205582511176 NA NA prediction 0.603644393272209 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89259936 chr16:89259935 nonsynonymous SNV 0.037 1 20 hm7G_associated_SNPs_13326 0 0 0 0 2 CDH15 chr16:89260014 5'GT 89260014 Upstream 80bp 12752 chr10 20465998 20465998 1 + G T LUAD 20465999 + 20465979 20466019 41 CAAAAATTACCAACATTTCGGCTGTGGAGATGACCCCATTA CAAAAATTACCAACATTTCTGCTGTGGAGATGACCCCATTA < 41bp 0.502154821813118 0.803975328546696 NA NA prediction 0.603641013467155 Functional Gain - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20465999 chr10:20465998 synonymous SNV . 0 20 hm7G_associated_SNPs_13327 0 0 0 0 2 PLXDC2 chr10:20465928 3'AG 20465928 Downstream 71bp 12753 chr10 20465998 20465998 1 + G T LUAD 20465999 + 20465979 20466019 41 CAAAAATTACCAACATTTCGGCTGTGGAGATGACCCCATTA CAAAAATTACCAACATTTCTGCTGTGGAGATGACCCCATTA < 41bp 0.502154821813118 0.803975328546696 NA NA prediction 0.603641013467155 Functional Gain - PLXDC2 ENSG00000120594 CDS Human protein_coding chr10:20465999 chr10:20465998 synonymous SNV . 0 20 hm7G_associated_SNPs_13327 0 0 0 0 2 PLXDC2 chr10:20466023 5'GT 20466023 Upstream 26bp 12754 chr19 18700263 18700263 1 + G T UCEC 18700264 + 18700244 18700284 41 CCTGAGAGCCTGGGGGCGCGGCCTCAGGGTCCCCACATGCC CCTGAGAGCCTGGGGGCGCTGCCTCAGGGTCCCCACATGCC < 41bp 0.51695526772985 0.818775378052625 NA NA prediction 0.603640220645551 Functional Gain - C19orf60 ENSG00000006015 CDS Human protein_coding chr19:18700264 chr19:18700263 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_13328 0 0 1 0 1 C19orf60 chr19:18700223 3'AG 18700223 Downstream 41bp 12755 chr5 76646894 76646894 1 + G T LUSC 76646895 + 76646875 76646915 41 TCTTTGTCCATGTAGGAGTGGCAGGGGGTTTACTATGCCAG TCTTTGTCCATGTAGGAGTTGCAGGGGGTTTACTATGCCAG < 41bp 0.5052414122515 0.807023910630604 NA NA prediction 0.603564996758208 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76646895 chr5:76646894 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13329 0 0 0 0 1 PDE8B chr5:76646890 3'AG 76646890 Downstream 5bp 12756 chr16 30510400 30510400 1 + G T UCEC 30510401 + 30510381 30510421 41 CTTCTGCCCTGCAGCTCCCGGCCCGTGGTGGATATGGTCAC CTTCTGCCCTGCAGCTCCCTGCCCGTGGTGGATATGGTCAC < 41bp 0.531124666853077 0.832901516343824 NA NA prediction 0.603553698981496 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30510401 chr16:30510400 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_13330 0 0 0 0 1 ITGAL chr16:30510395 3'AG 30510395 Downstream 6bp 12757 chr16 50346897 50346897 1 + G T UCEC 50346898 + 50346878 50346918 41 GTGCGATGTCAACAAAGAAGGGCTGGAGTGCCTACGCCTGC GTGCGATGTCAACAAAGAATGGCTGGAGTGCCTACGCCTGC < 41bp 0.483112672941776 0.801768139268345 NA NA prediction 0.60353627853669 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50346898 chr16:50346897 nonsynonymous SNV 0.946 4 20 hm7G_associated_SNPs_13331 0 0 1 0 2 ADCY7 chr16:50346801 3'AG 50346801 Downstream 97bp 12758 chr16 50346897 50346897 1 + G T UCEC 50346898 + 50346878 50346918 41 GTGCGATGTCAACAAAGAAGGGCTGGAGTGCCTACGCCTGC GTGCGATGTCAACAAAGAATGGCTGGAGTGCCTACGCCTGC < 41bp 0.483112672941776 0.801768139268345 NA NA prediction 0.60353627853669 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50346898 chr16:50346897 nonsynonymous SNV 0.946 4 20 hm7G_associated_SNPs_13331 0 0 1 0 2 ADCY7 chr16:50346947 5'GT 50346947 Upstream 51bp 12759 chr20 37353670 37353670 1 + G T UCEC 37353671 + 37353651 37353691 41 CCTCCGGCTCCAAGGACCAGGTGGGAGGTGGTGGCGAATTC CCTCCGGCTCCAAGGACCATGTGGGAGGTGGTGGCGAATTC < 41bp 0.503691959416067 0.805447021879397 NA NA prediction 0.603510124926661 Functional Gain - SLC32A1 ENSG00000101438 CDS Human protein_coding chr20:37353671 chr20:37353670 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_13332 0 0 0 0 1 SLC32A1 chr20:37353757 5'GT 37353757 Upstream 88bp 12760 chr11 66833392 66833392 1 + G T SARC 66833393 + 66833373 66833413 41 ACCCCCACGGTGTTTGAGCGGTACATGGTCAACCTGCAAGT ACCCCCACGGTGTTTGAGCTGTACATGGTCAACCTGCAAGT < 41bp 0.516921810729532 0.818668021997997 NA NA prediction 0.60349242253693 Functional Gain - RHOD ENSG00000173156 CDS Human protein_coding chr11:66833393 chr11:66833392 nonsynonymous SNV 0.683 2 20 hm7G_associated_SNPs_13334 0 0 0 0 2 RHOD chr11:66833367 3'AG 66833367 Downstream 26bp 12761 chr11 66833392 66833392 1 + G T SARC 66833393 + 66833373 66833413 41 ACCCCCACGGTGTTTGAGCGGTACATGGTCAACCTGCAAGT ACCCCCACGGTGTTTGAGCTGTACATGGTCAACCTGCAAGT < 41bp 0.516921810729532 0.818668021997997 NA NA prediction 0.60349242253693 Functional Gain - RHOD ENSG00000173156 CDS Human protein_coding chr11:66833393 chr11:66833392 nonsynonymous SNV 0.683 2 20 hm7G_associated_SNPs_13334 0 0 0 0 2 RHOD chr11:66833454 5'GT 66833454 Upstream 63bp 12762 chr16 69152264 69152264 1 + G T UCEC 69152265 + 69152245 69152285 41 TTCTGTGTTCAAGCCCCCAGGGAAAGGTATGGCAGTAGAGG TTCTGTGTTCAAGCCCCCATGGAAAGGTATGGCAGTAGAGG < 41bp 0.50365107996103 0.805382554173022 NA NA prediction 0.603462948423985 Functional Gain - HAS3 ENSG00000103044 CDS Human protein_coding chr16:69152265 chr16:69152264 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_13336 0 0 0 0 1 HAS3 chr16:69152258 3'AG 69152258 Downstream 7bp 12763 chr12 54966436 54966436 1 + G T THCA 54966437 + 54966417 54966457 41 TGCCTTGGAGACAGGCTATGGGAAGTACAAGAATCCTTACC TGCCTTGGAGACAGGCTATTGGAAGTACAAGAATCCTTACC < 41bp 0.474297276063888 0.801730283132474 NA NA prediction 0.603460566264948 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54966437 chr12:54966436 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_13337 0 0 0 0 2 PDE1B chr12:54966385 3'AG 54966385 Downstream 52bp 12764 chr12 54966436 54966436 1 + G T THCA 54966437 + 54966417 54966457 41 TGCCTTGGAGACAGGCTATGGGAAGTACAAGAATCCTTACC TGCCTTGGAGACAGGCTATTGGAAGTACAAGAATCCTTACC < 41bp 0.474297276063888 0.801730283132474 NA NA prediction 0.603460566264948 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54966437 chr12:54966436 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_13337 0 0 0 0 2 PDE1B chr12:54966525 5'GT 54966525 Upstream 90bp 12765 chrX 10107541 10107541 1 + G T STAD 10107542 + 10107522 10107562 41 GAGATCTACCAGCTGCGTGGGCAGAGCCACAAAGAGCCCAT GAGATCTACCAGCTGCGTGTGCAGAGCCACAAAGAGCCCAT < 41bp 0.523533133073895 0.825258193031208 NA NA prediction 0.603450119914624 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10107542 chrX:10107541 nonsynonymous SNV 0.005 4 20 hm7G_associated_SNPs_13339 0 0 0 0 2 WWC3 chrX:10107453 3'AG 10107453 Downstream 89bp 12766 chrX 10107541 10107541 1 + G T STAD 10107542 + 10107522 10107562 41 GAGATCTACCAGCTGCGTGGGCAGAGCCACAAAGAGCCCAT GAGATCTACCAGCTGCGTGTGCAGAGCCACAAAGAGCCCAT < 41bp 0.523533133073895 0.825258193031208 NA NA prediction 0.603450119914624 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10107542 chrX:10107541 nonsynonymous SNV 0.005 4 20 hm7G_associated_SNPs_13339 0 0 0 0 2 WWC3 chrX:10107580 5'GT 10107580 Upstream 40bp 12767 chr6 159184468 159184468 1 + G T LIHC 159184469 + 159184449 159184489 41 AGCTGAGGCAGTCAAGCTTGGAGTTAACTGTCTGGGATCAG AGCTGAGGCAGTCAAGCTTTGAGTTAACTGTCTGGGATCAG < 41bp 0.486913808614934 0.80171919286665 NA NA prediction 0.603438385733301 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159184469 chr6:159184468 nonsynonymous SNV 0.049 3 20 hm7G_associated_SNPs_13341 0 0 0 0 1 SYTL3 chr6:159184541 5'GT 159184541 Upstream 74bp 12768 chr19 38897694 38897694 1 + G T UCEC 38897695 + 38897675 38897715 41 CAGCGTGGCTGTCCGCAGAGGGACCTGCTGTGCCATCAACA CAGCGTGGCTGTCCGCAGATGGACCTGCTGTGCCATCAACA < 41bp 0.53041722777195 0.832133247749422 NA NA prediction 0.603432039954945 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38897695 chr19:38897694 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_13342 0 0 0 0 1 FAM98C chr19:38897717 5'GT 38897717 Upstream 24bp 12769 chr5 176295234 176295234 1 + G T UCEC 176295235 + 176295215 176295255 41 GCGTGGCATGGAGCTCCTCGGGCACCACCAAGAGTCAGAAG GCGTGGCATGGAGCTCCTCTGGCACCACCAAGAGTCAGAAG < 41bp 0.540187588946539 0.841896204854384 NA NA prediction 0.60341723181569 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295235 chr5:176295234 synonymous SNV . 0 20 hm7G_associated_SNPs_13343 0 0 0 0 1 UNC5A chr5:176295274 5'GT 176295274 Upstream 41bp 12770 chr12 72372748 72372748 1 + G T LUAD 72372749 + 72372729 72372769 41 TAGAAAGGTCTGGCTTCACGGTGAGGCCGGTGGCTGGATAC TAGAAAGGTCTGGCTTCACTGTGAGGCCGGTGGCTGGATAC < 41bp 0.500538737464012 0.802236280927604 NA NA prediction 0.603395086927183 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72372749 chr12:72372748 synonymous SNV . 0 20 hm7G_associated_SNPs_13345 0 0 0 0 1 TPH2 chr12:72372732 3'AG 72372732 Downstream 17bp 12771 chr12 57970637 57970637 1 + G T LUAD 57970638 + 57970618 57970658 41 AGAAGAGCACCAAGCTGCAGGAGCTGACGTGAGTGGCATGG AGAAGAGCACCAAGCTGCATGAGCTGACGTGAGTGGCATGG < 41bp 0.510744369979424 0.812425650648638 NA NA prediction 0.603362561338427 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970638 chr12:57970637 nonsynonymous SNV 0.963 1 20 hm7G_associated_SNPs_13346 0 0 0 0 2 KIF5A chr12:57970544 3'AG 57970544 Downstream 94bp 12772 chr12 57970637 57970637 1 + G T LUAD 57970638 + 57970618 57970658 41 AGAAGAGCACCAAGCTGCAGGAGCTGACGTGAGTGGCATGG AGAAGAGCACCAAGCTGCATGAGCTGACGTGAGTGGCATGG < 41bp 0.510744369979424 0.812425650648638 NA NA prediction 0.603362561338427 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57970638 chr12:57970637 nonsynonymous SNV 0.963 1 20 hm7G_associated_SNPs_13346 0 0 0 0 2 KIF5A chr12:57970645 5'GT 57970645 Upstream 9bp 12773 chr6 39855321 39855321 1 + G T COAD 39855322 + 39855302 39855342 41 GCAAGGTCAAAGAGCTGTCGGTCATTGATGGCCGGAGGGCC GCAAGGTCAAAGAGCTGTCTGTCATTGATGGCCGGAGGGCC < 41bp 0.526861896939591 0.828528873322034 NA NA prediction 0.603333952764886 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39855322 chr6:39855321 synonymous SNV . 0 20 hm7G_associated_SNPs_13347 0 0 0 0 2 DAAM2 chr6:39855262 3'AG 39855262 Downstream 60bp 12774 chr6 39855321 39855321 1 + G T COAD 39855322 + 39855302 39855342 41 GCAAGGTCAAAGAGCTGTCGGTCATTGATGGCCGGAGGGCC GCAAGGTCAAAGAGCTGTCTGTCATTGATGGCCGGAGGGCC < 41bp 0.526861896939591 0.828528873322034 NA NA prediction 0.603333952764886 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39855322 chr6:39855321 synonymous SNV . 0 20 hm7G_associated_SNPs_13347 0 0 0 0 2 DAAM2 chr6:39855368 5'GT 39855368 Upstream 48bp 12775 chr17 80680735 80680735 1 + G T TGCT 80680736 + 80680716 80680756 41 CCCGGTTTGGATTTGACGTGGTGACGTGCTGTGGATACCTC CCCGGTTTGGATTTGACGTTGTGACGTGCTGTGGATACCTC < 41bp 0.481936905431947 0.80166126902469 NA NA prediction 0.60332253804938 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680736 chr17:80680735 synonymous SNV . 0 20 hm7G_associated_SNPs_13348 0 0 1 0 2 FN3KRP chr17:80680680 3'AG 80680680 Downstream 56bp 12776 chr17 80680735 80680735 1 + G T TGCT 80680736 + 80680716 80680756 41 CCCGGTTTGGATTTGACGTGGTGACGTGCTGTGGATACCTC CCCGGTTTGGATTTGACGTTGTGACGTGCTGTGGATACCTC < 41bp 0.481936905431947 0.80166126902469 NA NA prediction 0.60332253804938 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80680736 chr17:80680735 synonymous SNV . 0 20 hm7G_associated_SNPs_13348 0 0 1 0 2 FN3KRP chr17:80680762 5'GT 80680762 Upstream 28bp 12777 chr19 14150626 14150626 1 + G T UCEC 14150627 + 14150607 14150647 41 CCGAGGATGACCCCCTGGAGGCCACTGTCCATTGGGCCCCA CCGAGGATGACCCCCTGGATGCCACTGTCCATTGGGCCCCA < 41bp 0.542749745562889 0.844392001626531 NA NA prediction 0.603284512127284 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150627 chr19:14150626 nonsynonymous SNV 0.959 0 20 hm7G_associated_SNPs_13350 0 0 0 0 2 IL27RA chr19:14150565 3'AG 14150565 Downstream 62bp 12778 chr19 14150626 14150626 1 + G T UCEC 14150627 + 14150607 14150647 41 CCGAGGATGACCCCCTGGAGGCCACTGTCCATTGGGCCCCA CCGAGGATGACCCCCTGGATGCCACTGTCCATTGGGCCCCA < 41bp 0.542749745562889 0.844392001626531 NA NA prediction 0.603284512127284 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150627 chr19:14150626 nonsynonymous SNV 0.959 0 20 hm7G_associated_SNPs_13350 0 0 0 0 2 IL27RA chr19:14150722 5'GT 14150722 Upstream 97bp 12779 chr12 124236880 124236880 1 + G T LUSC 124236881 + 124236861 124236901 41 AGGAAGAAGTTTCATTGCTGGGAAGCCAAGATATAGAAGAG AGGAAGAAGTTTCATTGCTTGGAAGCCAAGATATAGAAGAG < 41bp 0.512433999457815 0.814072495518798 NA NA prediction 0.603276992121966 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124236881 chr12:124236880 synonymous SNV . 0 20 hm7G_associated_SNPs_13351 0 0 1 0 1 ATP6V0A2 chr12:124236949 5'GT 124236949 Upstream 70bp 12780 chr4 4322400 4322400 1 + G T UCEC 4322401 + 4322381 4322421 41 GGATCAGGTGACCTCCGCAGGCATGTCCGCACTCACACTGG GGATCAGGTGACCTCCGCATGCATGTCCGCACTCACACTGG < 41bp 0.509878161707995 0.811510668917657 NA NA prediction 0.603265014419325 Functional Gain - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4322401 chr4:4322400 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_13352 0 0 1 0 1 ZBTB49 chr4:4322367 3'AG 4322367 Downstream 34bp 12781 chr16 55525858 55525858 1 + G T UCEC 55525859 + 55525839 55525879 41 ATGACATCAAGGGCATTCAGGAGCTCTATGGTAAACCTCCG ATGACATCAAGGGCATTCATGAGCTCTATGGTAAACCTCCG < 41bp 0.479962384266697 0.801603928582175 NA NA prediction 0.60320785716435 Functional Gain - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55525859 chr16:55525858 nonsynonymous SNV 0.953 3 20 hm7G_associated_SNPs_13353 0 0 0 0 1 MMP2 chr16:55525868 5'GT 55525868 Upstream 11bp 12782 chr16 11009430 11009430 1 + G T LUSC 11009431 + 11009411 11009451 41 GCTCTTTGCCTCCTAGGCTGGGCCCTGTCTCAGGCCCCCAG GCTCTTTGCCTCCTAGGCTTGGCCCTGTCTCAGGCCCCCAG < 41bp 0.482240043439501 0.801599828578406 NA NA prediction 0.603199657156813 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11009431 chr16:11009430 synonymous SNV . 0 20 hm7G_associated_SNPs_13354 0 0 0 0 2 CIITA chr16:11009427 3'AG 11009427 Downstream 4bp 12783 chr16 11009430 11009430 1 + G T LUSC 11009431 + 11009411 11009451 41 GCTCTTTGCCTCCTAGGCTGGGCCCTGTCTCAGGCCCCCAG GCTCTTTGCCTCCTAGGCTTGGCCCTGTCTCAGGCCCCCAG < 41bp 0.482240043439501 0.801599828578406 NA NA prediction 0.603199657156813 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11009431 chr16:11009430 synonymous SNV . 0 20 hm7G_associated_SNPs_13354 0 0 0 0 2 CIITA chr16:11009507 5'GT 11009507 Upstream 78bp 12784 chr3 73004260 73004260 1 + G T COAD 73004261 + 73004241 73004281 41 ACACAAAGGTGATTTTAAAGGATGTGGACTCACTTCTCTAC ACACAAAGGTGATTTTAAATGATGTGGACTCACTTCTCTAC < 41bp 0.507665201211429 0.809259940889628 NA NA prediction 0.6031894793564 Functional Gain - GXYLT2 ENSG00000172986 CDS Human protein_coding chr3:73004261 chr3:73004260 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13355 0 0 1 0 1 GXYLT2 chr3:73004249 3'AG 73004249 Downstream 12bp 12785 chr1 154316484 154316484 1 + G T HNSC 154316485 + 154316465 154316505 41 AGCCTGGCCCAGGACAGCCGGGAGGACAGGCTGGCTAGCAT AGCCTGGCCCAGGACAGCCTGGAGGACAGGCTGGCTAGCAT < 41bp 0.535075115480319 0.836645704230006 NA NA prediction 0.603141177499374 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154316485 chr1:154316484 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_13356 0 0 1 0 1 ATP8B2 chr1:154316533 5'GT 154316533 Upstream 50bp 12786 chr2 88828648 88828648 1 + G T LGG 88828649 + 88828629 88828669 41 CAACCCCAAGCTAACAGATGGGTACCCTGCTTTCAAAAGAC CAACCCCAAGCTAACAGATTGGTACCCTGCTTTCAAAAGAC < 41bp 0.500545424854788 0.802112441422715 NA NA prediction 0.603134033135853 Functional Gain - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88828649 chr2:88828648 nonsynonymous SNV 0.668 4 20 hm7G_associated_SNPs_13357 0 0 0 0 1 TEX37 chr2:88828570 3'AG 88828570 Downstream 79bp 12787 chr3 40553010 40553010 1 + G T UCEC 40553011 + 40552991 40553031 41 TACTTCACCCAGAATGAATGGGCCAGCCTGGACTCTGTGCA TACTTCACCCAGAATGAATTGGCCAGCCTGGACTCTGTGCA < 41bp 0.521969431875083 0.823532304012059 NA NA prediction 0.603125744273952 Functional Gain - ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553011 chr3:40553010 nonsynonymous SNV 0.864 3 20 hm7G_associated_SNPs_13358 0 0 1 0 2 ZNF620 chr3:40552961 3'AG 40552961 Downstream 50bp 12788 chr3 40553010 40553010 1 + G T UCEC 40553011 + 40552991 40553031 41 TACTTCACCCAGAATGAATGGGCCAGCCTGGACTCTGTGCA TACTTCACCCAGAATGAATTGGCCAGCCTGGACTCTGTGCA < 41bp 0.521969431875083 0.823532304012059 NA NA prediction 0.603125744273952 Functional Gain - ZNF620 ENSG00000177842 CDS Human protein_coding chr3:40553011 chr3:40553010 nonsynonymous SNV 0.864 3 20 hm7G_associated_SNPs_13358 0 0 1 0 2 ZNF620 chr3:40553087 5'GT 40553087 Upstream 78bp 12789 chr6 158449823 158449823 1 + G T UCEC 158449824 + 158449804 158449844 41 CTTCCTGGTGTTGGTGACAGGCTGCACATCTGTGGGCAGAA CTTCCTGGTGTTGGTGACATGCTGCACATCTGTGGGCAGAA < 41bp 0.522306946823569 0.823865376204468 NA NA prediction 0.603116858761798 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158449824 chr6:158449823 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13359 0 0 1 0 1 SYNJ2 chr6:158449788 3'AG 158449788 Downstream 36bp 12790 chr7 106797751 106797751 1 + G T LUAD 106797752 + 106797732 106797772 41 AGCTTCTGCCCACGCCATTGGGACTGTCAAATGTTTAGGTA AGCTTCTGCCCACGCCATTTGGACTGTCAAATGTTTAGGTA < 41bp 0.509855332148347 0.811413328887816 NA NA prediction 0.603115993478938 Functional Gain - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797752 chr7:106797751 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13360 0 0 1 0 1 PRKAR2B chr7:106797769 5'GT 106797769 Upstream 19bp 12791 chr6 43222304 43222304 1 + G T LUAD 43222305 + 43222285 43222325 41 TCAAACTTTGCCATGGGCAGGCTGCCCTCCACCTACAGGAA TCAAACTTTGCCATGGGCATGCTGCCCTCCACCTACAGGAA < 41bp 0.478780226845298 0.801550776992797 NA NA prediction 0.603101553985594 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222305 chr6:43222304 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13361 0 0 0 0 2 TTBK1 chr6:43222285 3'AG 43222285 Downstream 20bp 12792 chr6 43222304 43222304 1 + G T LUAD 43222305 + 43222285 43222325 41 TCAAACTTTGCCATGGGCAGGCTGCCCTCCACCTACAGGAA TCAAACTTTGCCATGGGCATGCTGCCCTCCACCTACAGGAA < 41bp 0.478780226845298 0.801550776992797 NA NA prediction 0.603101553985594 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222305 chr6:43222304 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13361 0 0 0 0 2 TTBK1 chr6:43222389 5'GT 43222389 Upstream 86bp 12793 chr4 26417130 26417130 1 + G T SKCM 26417131 + 26417111 26417151 41 CTCCTTGTGTATATCTTATGGGCAGTGGATGGAAGAAAAAA CTCCTTGTGTATATCTTATTGGCAGTGGATGGAAGAAAAAA < 41bp 0.510284617124605 0.811830748619074 NA NA prediction 0.60309226298894 Functional Gain - RBPJ ENSG00000168214 CDS Human protein_coding chr4:26417131 chr4:26417130 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13362 0 0 1 0 1 RBPJ chr4:26417097 3'AG 26417097 Downstream 34bp 12794 chr16 31424470 31424470 1 + G T UCEC 31424471 + 31424451 31424491 41 GCCCTGTGGAGGTGGCCAAGGCTGTGTACCGGTGCTGGGAA GCCCTGTGGAGGTGGCCAATGCTGTGTACCGGTGCTGGGAA < 41bp 0.477951942272056 0.801545186264539 NA NA prediction 0.603090372529078 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424471 chr16:31424470 nonsynonymous SNV 0.738 1 20 hm7G_associated_SNPs_13363 0 0 0 0 2 ITGAD chr16:31424410 3'AG 31424410 Downstream 61bp 12795 chr16 31424470 31424470 1 + G T UCEC 31424471 + 31424451 31424491 41 GCCCTGTGGAGGTGGCCAAGGCTGTGTACCGGTGCTGGGAA GCCCTGTGGAGGTGGCCAATGCTGTGTACCGGTGCTGGGAA < 41bp 0.477951942272056 0.801545186264539 NA NA prediction 0.603090372529078 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424471 chr16:31424470 nonsynonymous SNV 0.738 1 20 hm7G_associated_SNPs_13363 0 0 0 0 2 ITGAD chr16:31424567 5'GT 31424567 Upstream 98bp 12796 chr3 50311428 50311428 1 + G T UCEC 50311429 + 50311409 50311449 41 GACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTG GACCCTTTGCACACAAGGATGGGCCCATGCACCAGTGGGTG < 41bp 0.502307827308727 0.803848098354581 NA NA prediction 0.603080542091707 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50311429 chr3:50311428 . 0.357 3 20 hm7G_associated_SNPs_13364 0 0 0 0 3 SEMA3B chr3:50311344 3'AG 50311344 Downstream 85bp 12797 chr3 50311428 50311428 1 + G T UCEC 50311429 + 50311409 50311449 41 GACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTG GACCCTTTGCACACAAGGATGGGCCCATGCACCAGTGGGTG < 41bp 0.502307827308727 0.803848098354581 NA NA prediction 0.603080542091707 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50311429 chr3:50311428 . 0.357 3 20 hm7G_associated_SNPs_13364 0 0 0 0 3 SEMA3B chr3:50311347 3'AG 50311347 Downstream 82bp 12798 chr3 50311428 50311428 1 + G T UCEC 50311429 + 50311409 50311449 41 GACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTG GACCCTTTGCACACAAGGATGGGCCCATGCACCAGTGGGTG < 41bp 0.502307827308727 0.803848098354581 NA NA prediction 0.603080542091707 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50311429 chr3:50311428 . 0.357 3 20 hm7G_associated_SNPs_13364 0 0 0 0 3 SEMA3B chr3:50311488 5'GT 50311488 Upstream 61bp 12799 chr19 55505725 55505725 1 + G T LIHC 55505726 + 55505706 55505746 41 CCTGTTGTGTTTGGATCTGGGGCTGAATCACATAGGAGTTA CCTGTTGTGTTTGGATCTGTGGCTGAATCACATAGGAGTTA < 41bp 0.487767102536282 0.801523378550383 NA NA prediction 0.603046757100767 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55505726 chr19:55505725 nonsynonymous SNV 0.224 3 20 hm7G_associated_SNPs_13366 0 0 0 0 2 NLRP2 chr19:55505637 3'AG 55505637 Downstream 89bp 12800 chr19 55505725 55505725 1 + G T LIHC 55505726 + 55505706 55505746 41 CCTGTTGTGTTTGGATCTGGGGCTGAATCACATAGGAGTTA CCTGTTGTGTTTGGATCTGTGGCTGAATCACATAGGAGTTA < 41bp 0.487767102536282 0.801523378550383 NA NA prediction 0.603046757100767 Functional Gain - NLRP2 ENSG00000022556 CDS Human protein_coding chr19:55505726 chr19:55505725 nonsynonymous SNV 0.224 3 20 hm7G_associated_SNPs_13366 0 0 0 0 2 NLRP2 chr19:55505807 5'GT 55505807 Upstream 83bp 12801 chr17 72306227 72306227 1 + G T KIRP 72306228 + 72306208 72306248 41 TCGCCTGCGGCTCCCAGCTGGGGACAACCACCCTGCTGGAG TCGCCTGCGGCTCCCAGCTTGGGACAACCACCCTGCTGGAG < 41bp 0.474100899533876 0.801506530860359 NA NA prediction 0.603013061720717 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306228 chr17:72306227 synonymous SNV . 0 20 hm7G_associated_SNPs_13367 0 0 0 0 3 DNAI2 chr17:72306156 3'AG 72306156 Downstream 72bp 12802 chr17 72306227 72306227 1 + G T KIRP 72306228 + 72306208 72306248 41 TCGCCTGCGGCTCCCAGCTGGGGACAACCACCCTGCTGGAG TCGCCTGCGGCTCCCAGCTTGGGACAACCACCCTGCTGGAG < 41bp 0.474100899533876 0.801506530860359 NA NA prediction 0.603013061720717 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306228 chr17:72306227 synonymous SNV . 0 20 hm7G_associated_SNPs_13367 0 0 0 0 3 DNAI2 chr17:72306192 3'AG 72306192 Downstream 36bp 12803 chr17 72306227 72306227 1 + G T KIRP 72306228 + 72306208 72306248 41 TCGCCTGCGGCTCCCAGCTGGGGACAACCACCCTGCTGGAG TCGCCTGCGGCTCCCAGCTTGGGACAACCACCCTGCTGGAG < 41bp 0.474100899533876 0.801506530860359 NA NA prediction 0.603013061720717 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306228 chr17:72306227 synonymous SNV . 0 20 hm7G_associated_SNPs_13367 0 0 0 0 3 DNAI2 chr17:72306302 5'GT 72306302 Upstream 76bp 12804 chr20 5166428 5166428 1 + G T COAD 5166429 + 5166409 5166449 41 CCCGAAGAAGACCTGGGAAGGCTTCATTGGGGGCTTCTTTG CCCGAAGAAGACCTGGGAATGCTTCATTGGGGGCTTCTTTG < 41bp 0.525364418728219 0.826865170859049 NA NA prediction 0.603001504261659 Functional Gain - CDS2 ENSG00000101290 CDS Human protein_coding chr20:5166429 chr20:5166428 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13368 0 0 1 0 2 CDS2 chr20:5166404 3'AG 5166404 Downstream 25bp 12805 chr20 5166428 5166428 1 + G T COAD 5166429 + 5166409 5166449 41 CCCGAAGAAGACCTGGGAAGGCTTCATTGGGGGCTTCTTTG CCCGAAGAAGACCTGGGAATGCTTCATTGGGGGCTTCTTTG < 41bp 0.525364418728219 0.826865170859049 NA NA prediction 0.603001504261659 Functional Gain - CDS2 ENSG00000101290 CDS Human protein_coding chr20:5166429 chr20:5166428 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13368 0 0 1 0 2 CDS2 chr20:5166472 5'GT 5166472 Upstream 45bp 12806 chr7 99996935 99996935 1 + G T UCEC 99996936 + 99996916 99996956 41 AACCCTTCCAAAACACAGAGGAGCCATATGAGAATATCAGG AACCCTTCCAAAACACAGATGAGCCATATGAGAATATCAGG < 41bp 0.514768021663495 0.81626588649541 NA NA prediction 0.60299572966383 Functional Gain - PILRA ENSG00000085514 CDS Human protein_coding chr7:99996936 chr7:99996935 nonsynonymous SNV 0.031 2 20 hm7G_associated_SNPs_13369 0 0 0 0 2 PILRA chr7:99996914 3'AG 99996914 Downstream 22bp 12807 chr7 99996935 99996935 1 + G T UCEC 99996936 + 99996916 99996956 41 AACCCTTCCAAAACACAGAGGAGCCATATGAGAATATCAGG AACCCTTCCAAAACACAGATGAGCCATATGAGAATATCAGG < 41bp 0.514768021663495 0.81626588649541 NA NA prediction 0.60299572966383 Functional Gain - PILRA ENSG00000085514 CDS Human protein_coding chr7:99996936 chr7:99996935 nonsynonymous SNV 0.031 2 20 hm7G_associated_SNPs_13369 0 0 0 0 2 PILRA chr7:99996963 5'GT 99996963 Upstream 29bp 12808 chr19 2991927 2991927 1 + G T STAD 2991928 + 2991908 2991948 41 GGTCCGGATGCCTGTCTGCGGTGCTGGGACCAGAGGACCAT GGTCCGGATGCCTGTCTGCTGTGCTGGGACCAGAGGACCAT < 41bp 0.525202987438941 0.826678915583531 NA NA prediction 0.602951856289182 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2991928 chr19:2991927 nonsynonymous SNV 0.971 3 20 hm7G_associated_SNPs_13371 0 0 0 0 2 TLE6 chr19:2991841 3'AG 2991841 Downstream 87bp 12809 chr19 2991927 2991927 1 + G T STAD 2991928 + 2991908 2991948 41 GGTCCGGATGCCTGTCTGCGGTGCTGGGACCAGAGGACCAT GGTCCGGATGCCTGTCTGCTGTGCTGGGACCAGAGGACCAT < 41bp 0.525202987438941 0.826678915583531 NA NA prediction 0.602951856289182 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2991928 chr19:2991927 nonsynonymous SNV 0.971 3 20 hm7G_associated_SNPs_13371 0 0 0 0 2 TLE6 chr19:2991982 5'GT 2991982 Upstream 56bp 12810 chr9 128094292 128094292 1 + G T LUAD 128094293 + 128094273 128094313 41 TCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCCCAG TCTGATGATACGGATGTCATGGAGGTCAGTTCCCGCCCCAG < 41bp 0.485705327451644 0.801463610939794 NA NA prediction 0.602927221879587 Functional Gain - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128094293 chr9:128094292 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13372 0 0 1 0 2 GAPVD1 chr9:128094205 3'AG 128094205 Downstream 88bp 12811 chr9 128094292 128094292 1 + G T LUAD 128094293 + 128094273 128094313 41 TCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCCCAG TCTGATGATACGGATGTCATGGAGGTCAGTTCCCGCCCCAG < 41bp 0.485705327451644 0.801463610939794 NA NA prediction 0.602927221879587 Functional Gain - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128094293 chr9:128094292 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13372 0 0 1 0 2 GAPVD1 chr9:128094339 5'GT 128094339 Upstream 48bp 12812 chr16 70349956 70349956 1 + G T THCA 70349957 + 70349937 70349977 41 CAAGTGGAAGTCCTGCAGCGGGATCCAAACTCCCCTCTGTA CAAGTGGAAGTCCTGCAGCTGGATCCAAACTCCCCTCTGTA < 41bp 0.48651293043622 0.801445576224687 NA NA prediction 0.602891152449375 Functional Gain - DDX19B ENSG00000157349;ENSG00000260537 CDS Human other chr16:70349957 chr16:70349956 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_13373 0 0 1 0 2 DDX19B chr16:70349872 3'AG 70349872 Downstream 85bp 12813 chr16 70349956 70349956 1 + G T THCA 70349957 + 70349937 70349977 41 CAAGTGGAAGTCCTGCAGCGGGATCCAAACTCCCCTCTGTA CAAGTGGAAGTCCTGCAGCTGGATCCAAACTCCCCTCTGTA < 41bp 0.48651293043622 0.801445576224687 NA NA prediction 0.602891152449375 Functional Gain - DDX19B ENSG00000157349;ENSG00000260537 CDS Human other chr16:70349957 chr16:70349956 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_13373 0 0 1 0 2 DDX19B chr16:70350007 5'GT 70350007 Upstream 52bp 12814 chr2 46603775 46603775 1 + G T LUAD 46603776 + 46603756 46603796 41 CAGCATCTTTGATAGCAGTGGCAAGGGGGCTGTGTCTGAGA CAGCATCTTTGATAGCAGTTGCAAGGGGGCTGTGTCTGAGA < 41bp 0.532385025189101 0.833826800923565 NA NA prediction 0.602883551468928 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46603776 chr2:46603775 nonsynonymous SNV 0.411 1 20 hm7G_associated_SNPs_13374 0 0 1 0 1 EPAS1 chr2:46603678 3'AG 46603678 Downstream 98bp 12815 chr19 3586634 3586634 1 + G T COAD 3586635 + 3586615 3586655 41 TAAGACAGAGGATGCTCTGGGGCTGACCATCACGGACAACG TAAGACAGAGGATGCTCTGTGGCTGACCATCACGGACAACG < 41bp 0.477862748452884 0.801397964882243 NA NA prediction 0.602795929764486 Functional Gain - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3586635 chr19:3586634 nonsynonymous SNV 0.875 5 20 hm7G_associated_SNPs_13375 0 0 0 0 1 GIPC3 chr19:3586678 5'GT 3586678 Upstream 45bp 12816 chr17 7748949 7748949 1 + G T UCEC 7748950 + 7748930 7748970 41 GGGGGCCTGAGCTGTGCTGGGGCCTGGAGCTCCTGCCCGCC GGGGGCCTGAGCTGTGCTGTGGCCTGGAGCTCCTGCCCGCC < 41bp 0.539632556168161 0.841009385865643 NA NA prediction 0.602753659394964 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7748950 chr17:7748949 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13377 0 0 1 0 2 KDM6B chr17:7748868 3'AG 7748868 Downstream 82bp 12817 chr17 7748949 7748949 1 + G T UCEC 7748950 + 7748930 7748970 41 GGGGGCCTGAGCTGTGCTGGGGCCTGGAGCTCCTGCCCGCC GGGGGCCTGAGCTGTGCTGTGGCCTGGAGCTCCTGCCCGCC < 41bp 0.539632556168161 0.841009385865643 NA NA prediction 0.602753659394964 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7748950 chr17:7748949 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13377 0 0 1 0 2 KDM6B chr17:7749009 5'GT 7749009 Upstream 61bp 12818 chr7 150498674 150498674 1 + G T LUAD 150498675 + 150498655 150498695 41 GTGATGAGATGGCCCCGGAGGCCCCACAGCACACCCACATC GTGATGAGATGGCCCCGGATGCCCCACAGCACACCCACATC < 41bp 0.53116335814259 0.832501534722541 NA NA prediction 0.602676353159902 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150498675 chr7:150498674 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_13381 0 0 0 0 1 TMEM176A chr7:150498624 3'AG 150498624 Downstream 51bp 12819 chr7 128475589 128475589 1 + G T LUAD 128475590 + 128475570 128475610 41 CAACCGTGACTGGCAGGACGGCAAAGCTCTGGGCGCCCTGG CAACCGTGACTGGCAGGACTGCAAAGCTCTGGGCGCCCTGG < 41bp 0.518180784296098 0.819514027204909 NA NA prediction 0.602666485817622 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128475590 chr7:128475589 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_13382 0 0 1 0 1 FLNC chr7:128475628 5'GT 128475628 Upstream 40bp 12820 chr20 61467870 61467870 1 + G T STAD 61467871 + 61467851 61467891 41 CGCATCAGGGAGCTGTGTGGGGGGATGATCAGCGGTAAGTC CGCATCAGGGAGCTGTGTGTGGGGATGATCAGCGGTAAGTC < 41bp 0.493946574526476 0.80132595559105 NA NA prediction 0.6026519111821 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467871 chr20:61467870 nonsynonymous SNV 0.637 4 20 hm7G_associated_SNPs_13383 0 0 1 0 2 COL9A3 chr20:61467830 3'AG 61467830 Downstream 41bp 12821 chr20 61467870 61467870 1 + G T STAD 61467871 + 61467851 61467891 41 CGCATCAGGGAGCTGTGTGGGGGGATGATCAGCGGTAAGTC CGCATCAGGGAGCTGTGTGTGGGGATGATCAGCGGTAAGTC < 41bp 0.493946574526476 0.80132595559105 NA NA prediction 0.6026519111821 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467871 chr20:61467870 nonsynonymous SNV 0.637 4 20 hm7G_associated_SNPs_13383 0 0 1 0 2 COL9A3 chr20:61467884 5'GT 61467884 Upstream 15bp 12822 chrX 48674334 48674334 1 + G T UCEC 48674335 + 48674315 48674355 41 TGGAGGAGGACAATGTAGAGGAGAGCGAGGAGGAAGGACCC TGGAGGAGGACAATGTAGATGAGAGCGAGGAGGAAGGACCC < 41bp 0.510947716791346 0.812267675117047 NA NA prediction 0.602639916651401 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48674335 chrX:48674334 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_13384 0 0 1 0 1 HDAC6 chrX:48674291 3'AG 48674291 Downstream 44bp 12823 chr11 70007741 70007741 1 + G T LUSC 70007742 + 70007722 70007762 41 CTCTAGAGGTCCCAAAGACGGAGAAAAGCTTTGAGGAGAGG CTCTAGAGGTCCCAAAGACTGAGAAAAGCTTTGAGGAGAGG < 41bp 0.516378005624883 0.817689046386817 NA NA prediction 0.602622081523868 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007742 chr11:70007741 synonymous SNV . 0 20 hm7G_associated_SNPs_13385 0 0 0 0 2 ANO1 chr11:70007728 3'AG 70007728 Downstream 14bp 12824 chr11 70007741 70007741 1 + G T LUSC 70007742 + 70007722 70007762 41 CTCTAGAGGTCCCAAAGACGGAGAAAAGCTTTGAGGAGAGG CTCTAGAGGTCCCAAAGACTGAGAAAAGCTTTGAGGAGAGG < 41bp 0.516378005624883 0.817689046386817 NA NA prediction 0.602622081523868 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007742 chr11:70007741 synonymous SNV . 0 20 hm7G_associated_SNPs_13385 0 0 0 0 2 ANO1 chr11:70007839 5'GT 70007839 Upstream 99bp 12825 chr16 28836700 28836700 1 + G T COAD 28836701 + 28836681 28836721 41 TTATAGGGGACAGAGCACAGGAAAGGGACCCCCACAGTCAC TTATAGGGGACAGAGCACATGAAAGGGACCCCCACAGTCAC < 41bp 0.497615179209001 0.801302842722106 NA NA prediction 0.602605685444211 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28836701 chr16:28836700 stopgain 0.998 1 20 hm7G_associated_SNPs_13388 0 0 1 0 2 ATXN2L chr16:28836687 3'AG 28836687 Downstream 14bp 12826 chr16 28836700 28836700 1 + G T COAD 28836701 + 28836681 28836721 41 TTATAGGGGACAGAGCACAGGAAAGGGACCCCCACAGTCAC TTATAGGGGACAGAGCACATGAAAGGGACCCCCACAGTCAC < 41bp 0.497615179209001 0.801302842722106 NA NA prediction 0.602605685444211 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28836701 chr16:28836700 stopgain 0.998 1 20 hm7G_associated_SNPs_13388 0 0 1 0 2 ATXN2L chr16:28836723 5'GT 28836723 Upstream 24bp 12827 chr17 48606124 48606124 1 + G T UCS 48606125 + 48606105 48606145 41 TGGGAAGGAGGAGCGGAAAGGAGCAGCCCAGGAAAAGAAGC TGGGAAGGAGGAGCGGAAATGAGCAGCCCAGGAAAAGAAGC < 41bp 0.489998336719754 0.801298137230348 NA NA prediction 0.602596274460696 Functional Gain - MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48606125 chr17:48606124 stopgain 0.205 0 20 hm7G_associated_SNPs_13389 0 0 0 0 1 MYCBPAP chr17:48606056 3'AG 48606056 Downstream 69bp 12828 chr8 120429208 120429208 1 + G T LUAD 120429209 + 120429189 120429229 41 ACCAGACTGGCATCTGCACGGGTAATCCTGCTCCCTCTGCT ACCAGACTGGCATCTGCACTGGTAATCCTGCTCCCTCTGCT < 41bp 0.486466557975287 0.801293917946435 NA NA prediction 0.60258783589287 Functional Gain - NOV ENSG00000136999 CDS Human protein_coding chr8:120429209 chr8:120429208 synonymous SNV . 0 20 hm7G_associated_SNPs_13390 0 0 0 0 1 NOV chr8:120429209 5'GT 120429209 Upstream 2bp 12829 chr3 52831860 52831860 1 + G T UCEC 52831861 + 52831841 52831881 41 AGACATCTTCGAGCCTCAGGGAATCAGCATGCTGGATGCTG AGACATCTTCGAGCCTCAGTGAATCAGCATGCTGGATGCTG < 41bp 0.487330596232037 0.80127602924524 NA NA prediction 0.602552058490481 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52831861 chr3:52831860 stopgain 0.990 1 20 hm7G_associated_SNPs_13392 0 0 1 0 2 ITIH3 chr3:52831833 3'AG 52831833 Downstream 28bp 12830 chr3 52831860 52831860 1 + G T UCEC 52831861 + 52831841 52831881 41 AGACATCTTCGAGCCTCAGGGAATCAGCATGCTGGATGCTG AGACATCTTCGAGCCTCAGTGAATCAGCATGCTGGATGCTG < 41bp 0.487330596232037 0.80127602924524 NA NA prediction 0.602552058490481 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52831861 chr3:52831860 stopgain 0.990 1 20 hm7G_associated_SNPs_13392 0 0 1 0 2 ITIH3 chr3:52831946 5'GT 52831946 Upstream 87bp 12831 chr14 21461331 21461331 1 + G T SARC 21461332 + 21461312 21461352 41 TTTGATGGACTTTGGCTCAGGTACTGGTTCTGTCACCTGGT TTTGATGGACTTTGGCTCATGTACTGGTTCTGTCACCTGGT < 41bp 0.508999826730643 0.810251712074219 NA NA prediction 0.60250377068715 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21461332 chr14:21461331 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_13394 0 0 1 0 2 METTL17 chr14:21461277 3'AG 21461277 Downstream 55bp 12832 chr14 21461331 21461331 1 + G T SARC 21461332 + 21461312 21461352 41 TTTGATGGACTTTGGCTCAGGTACTGGTTCTGTCACCTGGT TTTGATGGACTTTGGCTCATGTACTGGTTCTGTCACCTGGT < 41bp 0.508999826730643 0.810251712074219 NA NA prediction 0.60250377068715 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21461332 chr14:21461331 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_13394 0 0 1 0 2 METTL17 chr14:21461350 5'GT 21461350 Upstream 20bp 12833 chr11 126126653 126126653 1 + G T OV 126126654 + 126126634 126126674 41 GAGAAAACATGCTGGACAAGGGGATTAAAGTCATCTCCTAT GAGAAAACATGCTGGACAATGGGATTAAAGTCATCTCCTAT < 41bp 0.501506797169111 0.802754370901808 NA NA prediction 0.602495147465395 Functional Gain - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126126654 chr11:126126653 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_13396 0 0 1 0 1 FAM118B chr11:126126747 5'GT 126126747 Upstream 95bp 12834 chr17 78091470 78091470 1 + G T UCEC 78091471 + 78091451 78091491 41 AGCCAGCCATCCACAGCGAGGGGCAGTGGGTGACGCTGCCG AGCCAGCCATCCACAGCGATGGGCAGTGGGTGACGCTGCCG < 41bp 0.538073285392207 0.839302815796708 NA NA prediction 0.602459060809002 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78091471 chr17:78091470 nonsynonymous SNV 0.950 1 20 hm7G_associated_SNPs_13397 0 0 1 0 2 GAA chr17:78091399 3'AG 78091399 Downstream 72bp 12835 chr17 78091470 78091470 1 + G T UCEC 78091471 + 78091451 78091491 41 AGCCAGCCATCCACAGCGAGGGGCAGTGGGTGACGCTGCCG AGCCAGCCATCCACAGCGATGGGCAGTGGGTGACGCTGCCG < 41bp 0.538073285392207 0.839302815796708 NA NA prediction 0.602459060809002 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78091471 chr17:78091470 nonsynonymous SNV 0.950 1 20 hm7G_associated_SNPs_13397 0 0 1 0 2 GAA chr17:78091548 5'GT 78091548 Upstream 79bp 12836 chr19 49965942 49965942 1 + G T BLCA 49965943 + 49965923 49965963 41 GATGGGGCCGTGGACATGGGGGCCCGGGGGGCTGCCGCATG GATGGGGCCGTGGACATGGTGGCCCGGGGGGCTGCCGCATG < 41bp 0.476800502223897 0.801229339804988 NA NA prediction 0.602458679609976 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human other chr19:49965943 chr19:49965942 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_13398 0 0 1 0 1 ALDH16A1 chr19:49966012 5'GT 49966012 Upstream 71bp 12837 chr18 61562567 61562567 1 + G T KIRP 61562568 + 61562548 61562588 41 AGAGAACTTTACCAGCTGTGGGTTCATGCAGCAGATCCAGA AGAGAACTTTACCAGCTGTTGGTTCATGCAGCAGATCCAGA < 41bp 0.489327478591829 0.80120516452484 NA NA prediction 0.602410329049679 Functional Gain - SERPINB2 ENSG00000197632 CDS Human protein_coding chr18:61562568 chr18:61562567 nonsynonymous SNV 0.027 1 20 hm7G_associated_SNPs_13400 0 0 0 0 2 SERPINB2 chr18:61562498 3'AG 61562498 Downstream 70bp 12838 chr18 61562567 61562567 1 + G T KIRP 61562568 + 61562548 61562588 41 AGAGAACTTTACCAGCTGTGGGTTCATGCAGCAGATCCAGA AGAGAACTTTACCAGCTGTTGGTTCATGCAGCAGATCCAGA < 41bp 0.489327478591829 0.80120516452484 NA NA prediction 0.602410329049679 Functional Gain - SERPINB2 ENSG00000197632 CDS Human protein_coding chr18:61562568 chr18:61562567 nonsynonymous SNV 0.027 1 20 hm7G_associated_SNPs_13400 0 0 0 0 2 SERPINB2 chr18:61562617 5'GT 61562617 Upstream 51bp 12839 chr20 36386031 36386031 1 + G T UCEC 36386032 + 36386012 36386052 41 CCCTCCATGAGAGTGAAGAGGGAGCAGAAGTGCTCATCGAT CCCTCCATGAGAGTGAAGATGGAGCAGAAGTGCTCATCGAT < 41bp 0.512809962715532 0.814011165872286 NA NA prediction 0.602402406313509 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36386032 chr20:36386031 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_13401 0 0 1 1 2 CTNNBL1 chr20:36385973 3'AG 36385973 Downstream 59bp 12840 chr20 36386031 36386031 1 + G T UCEC 36386032 + 36386012 36386052 41 CCCTCCATGAGAGTGAAGAGGGAGCAGAAGTGCTCATCGAT CCCTCCATGAGAGTGAAGATGGAGCAGAAGTGCTCATCGAT < 41bp 0.512809962715532 0.814011165872286 NA NA prediction 0.602402406313509 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36386032 chr20:36386031 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_13401 0 0 1 1 2 CTNNBL1 chr20:36386058 5'GT 36386058 Upstream 28bp 12841 chr17 61607699 61607699 1 + G T UCEC 61607700 + 61607680 61607720 41 TCCTGGCCCTGGTTTCAGAGGGCTCTCATGGCAGGCCAGGC TCCTGGCCCTGGTTTCAGATGGCTCTCATGGCAGGCCAGGC < 41bp 0.534898690318911 0.836088595187517 NA NA prediction 0.602379809737213 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61607700 chr17:61607699 nonsynonymous SNV 0.959 1 20 hm7G_associated_SNPs_13402 0 0 0 0 1 KCNH6 chr17:61607698 3'AG 61607698 Downstream 2bp 12842 chr11 134214956 134214956 1 + G T LUSC 134214957 + 134214937 134214977 41 CCTGATGGCCGCAGAGATCGGGCTGTGGGTGATTCTGCGTC CCTGATGGCCGCAGAGATCTGGCTGTGGGTGATTCTGCGTC < 41bp 0.495697133564422 0.801189709358834 NA NA prediction 0.602379418717669 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134214957 chr11:134214956 nonsynonymous SNV 0.553 5 20 hm7G_associated_SNPs_13403 0 0 0 0 2 GLB1L2 chr11:134214928 3'AG 134214928 Downstream 29bp 12843 chr11 134214956 134214956 1 + G T LUSC 134214957 + 134214937 134214977 41 CCTGATGGCCGCAGAGATCGGGCTGTGGGTGATTCTGCGTC CCTGATGGCCGCAGAGATCTGGCTGTGGGTGATTCTGCGTC < 41bp 0.495697133564422 0.801189709358834 NA NA prediction 0.602379418717669 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134214957 chr11:134214956 nonsynonymous SNV 0.553 5 20 hm7G_associated_SNPs_13403 0 0 0 0 2 GLB1L2 chr11:134215023 5'GT 134215023 Upstream 68bp 12844 chr12 57485758 57485758 1 + G T LUSC 57485759 + 57485739 57485779 41 CGACTCTAAGCGGCGGGAGGGCAAGCAGCTCAGCCTGCACG CGACTCTAAGCGGCGGGAGTGCAAGCAGCTCAGCCTGCACG < 41bp 0.518836901760595 0.820001976546471 NA NA prediction 0.602330149571751 Functional Gain - NAB2 ENSG00000166886 CDS Human protein_coding chr12:57485759 chr12:57485758 nonsynonymous SNV 0.924 4 20 hm7G_associated_SNPs_13405 0 0 1 0 1 NAB2 chr12:57485781 5'GT 57485781 Upstream 24bp 12845 chr16 19033117 19033117 1 + G T STAD 19033118 + 19033098 19033138 41 TCATTCCTTTCAAAGACATGGGTGAGTGTAAGGCCTGGTTT TCATTCCTTTCAAAGACATTGGTGAGTGTAAGGCCTGGTTT < 41bp 0.505222657048015 0.806366661303068 NA NA prediction 0.602288008510105 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19033118 chr16:19033117 nonsynonymous SNV 0.164 0 20 hm7G_associated_SNPs_13407 0 0 0 0 1 TMC7 chr16:19033118 5'GT 19033118 Upstream 2bp 12846 chr19 1221302 1221302 1 + G T LUSC 1221303 + 1221283 1221323 41 AGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTC AGGGGAGCTACGCCATCCCTGGCGACTGTGGCCCCCCGCTC < 41bp 0.464958528203154 0.801129381490223 NA NA prediction 0.602258762980445 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1221303 chr19:1221302 synonymous SNV . 0 20 hm7G_associated_SNPs_13410 0 0 1 0 2 STK11 chr19:1221212 3'AG 1221212 Downstream 91bp 12847 chr19 1221302 1221302 1 + G T LUSC 1221303 + 1221283 1221323 41 AGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTC AGGGGAGCTACGCCATCCCTGGCGACTGTGGCCCCCCGCTC < 41bp 0.464958528203154 0.801129381490223 NA NA prediction 0.602258762980445 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1221303 chr19:1221302 synonymous SNV . 0 20 hm7G_associated_SNPs_13410 0 0 1 0 2 STK11 chr19:1221339 5'GT 1221339 Upstream 38bp 12848 chr8 86385979 86385979 1 + G T LUAD 86385980 + 86385960 86386000 41 ATTCAGTTTCACTTTCACTGGGGTTCACTTGATGGACAAGG ATTCAGTTTCACTTTCACTTGGGTTCACTTGATGGACAAGG < 41bp 0.489260590358106 0.80112112384812 NA NA prediction 0.602242247696239 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86385980 chr8:86385979 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_13411 0 0 1 0 2 CA2 chr8:86385922 3'AG 86385922 Downstream 58bp 12849 chr8 86385979 86385979 1 + G T LUAD 86385980 + 86385960 86386000 41 ATTCAGTTTCACTTTCACTGGGGTTCACTTGATGGACAAGG ATTCAGTTTCACTTTCACTTGGGTTCACTTGATGGACAAGG < 41bp 0.489260590358106 0.80112112384812 NA NA prediction 0.602242247696239 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86385980 chr8:86385979 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_13411 0 0 1 0 2 CA2 chr8:86386040 5'GT 86386040 Upstream 62bp 12850 chr16 2287854 2287854 1 + G T UCEC 2287855 + 2287835 2287875 41 TCCGTCTGAGGAGCAGTGAGGTCTTCAAGTGGCTCATCCCT TCCGTCTGAGGAGCAGTGATGTCTTCAAGTGGCTCATCCCT < 41bp 0.511887947160175 0.81299784745793 NA NA prediction 0.602219800595509 Functional Gain - DNASE1L2 ENSG00000167968 CDS Human protein_coding chr16:2287855 chr16:2287854 nonsynonymous SNV 0.946 0 20 hm7G_associated_SNPs_13412 0 0 1 0 1 DNASE1L2 chr16:2287768 3'AG 2287768 Downstream 87bp 12851 chr8 42179874 42179874 1 + G T LIHC 42179875 + 42179855 42179895 41 TTCTTTGCAGTAAAACTGTGGTTTGCAAGCAGAAGGCGCTG TTCTTTGCAGTAAAACTGTTGTTTGCAAGCAGAAGGCGCTG < 41bp 0.498761799248949 0.801088621984274 NA NA prediction 0.602177243968548 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179875 chr8:42179874 synonymous SNV . 0 20 hm7G_associated_SNPs_13413 0 0 1 0 1 IKBKB chr8:42179865 3'AG 42179865 Downstream 10bp 12852 chr17 18144821 18144821 1 + G T PRAD 18144822 + 18144802 18144842 41 TCAAGCTGACGGCCCATGAGGGCTGTCGTGTGCGCAAGGTG TCAAGCTGACGGCCCATGATGGCTGTCGTGTGCGCAAGGTG < 41bp 0.541162036909057 0.84224691820339 NA NA prediction 0.602169762588666 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18144822 chr17:18144821 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_13414 0 0 1 0 1 LLGL1 chr17:18144765 3'AG 18144765 Downstream 57bp 12853 chr6 90333167 90333167 1 + G T CESC 90333168 + 90333148 90333188 41 ACACCCCCAGCAGTGAACAGGCTGTGGCCAGAAAAGAAGAA ACACCCCCAGCAGTGAACATGCTGTGGCCAGAAAAGAAGAA < 41bp 0.5321911501591 0.833270484673846 NA NA prediction 0.602158669029493 Functional Gain - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90333168 chr6:90333167 nonsynonymous SNV 0.947 2 20 hm7G_associated_SNPs_13415 0 0 0 0 2 ANKRD6 chr6:90333129 3'AG 90333129 Downstream 39bp 12854 chr6 90333167 90333167 1 + G T CESC 90333168 + 90333148 90333188 41 ACACCCCCAGCAGTGAACAGGCTGTGGCCAGAAAAGAAGAA ACACCCCCAGCAGTGAACATGCTGTGGCCAGAAAAGAAGAA < 41bp 0.5321911501591 0.833270484673846 NA NA prediction 0.602158669029493 Functional Gain - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90333168 chr6:90333167 nonsynonymous SNV 0.947 2 20 hm7G_associated_SNPs_13415 0 0 0 0 2 ANKRD6 chr6:90333263 5'GT 90333263 Upstream 97bp 12855 chr1 146757013 146757013 1 + G T STAD 146757014 + 146756994 146757034 41 CCTCTAGGTTCTCATCCCAGGCCTTGTGGAGGGATCTACCA CCTCTAGGTTCTCATCCCATGCCTTGTGGAGGGATCTACCA < 41bp 0.522916175094134 0.823988363549514 NA NA prediction 0.602144376910761 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146757014 chr1:146757013 nonsynonymous SNV 0.711 2 20 hm7G_associated_SNPs_13416 0 0 1 0 1 CHD1L chr1:146757001 3'AG 146757001 Downstream 13bp 12856 chr1 206664168 206664168 1 + G T UCEC 206664169 + 206664149 206664189 41 CAGGGCTTGGCTACAACGAGGAGCAGATTCACAAGCTGGAT CAGGGCTTGGCTACAACGATGAGCAGATTCACAAGCTGGAT < 41bp 0.523254381053873 0.824317378037088 NA NA prediction 0.60212599396643 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206664169 chr1:206664168 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_13417 0 0 1 0 2 IKBKE chr1:206664152 3'AG 206664152 Downstream 17bp 12857 chr1 206664168 206664168 1 + G T UCEC 206664169 + 206664149 206664189 41 CAGGGCTTGGCTACAACGAGGAGCAGATTCACAAGCTGGAT CAGGGCTTGGCTACAACGATGAGCAGATTCACAAGCTGGAT < 41bp 0.523254381053873 0.824317378037088 NA NA prediction 0.60212599396643 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206664169 chr1:206664168 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_13417 0 0 1 0 2 IKBKE chr1:206664191 5'GT 206664191 Upstream 24bp 12858 chr16 28895897 28895897 1 + G T HNSC 28895898 + 28895878 28895918 41 TCCCTACTCTCTCCACAGTGGGGGACAAAGTCCCTGCAGAC TCCCTACTCTCTCCACAGTTGGGGACAAAGTCCCTGCAGAC < 41bp 0.52775259696004 0.828807313433354 NA NA prediction 0.602109432946628 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28895898 chr16:28895897 synonymous SNV . 0 20 hm7G_associated_SNPs_13418 0 0 1 0 2 ATP2A1 chr16:28895896 3'AG 28895896 Downstream 2bp 12859 chr16 28895897 28895897 1 + G T HNSC 28895898 + 28895878 28895918 41 TCCCTACTCTCTCCACAGTGGGGGACAAAGTCCCTGCAGAC TCCCTACTCTCTCCACAGTTGGGGACAAAGTCCCTGCAGAC < 41bp 0.52775259696004 0.828807313433354 NA NA prediction 0.602109432946628 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28895898 chr16:28895897 synonymous SNV . 0 20 hm7G_associated_SNPs_13418 0 0 1 0 2 ATP2A1 chr16:28895976 5'GT 28895976 Upstream 80bp 12860 chr16 30096341 30096341 1 + G T COAD 30096342 + 30096322 30096362 41 CTGCTCCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCC CTGCTCCCCAAGAGACACGTGGCATCCCCTCCAAGAAGCCC < 41bp 0.488051919083895 0.801049536598026 NA NA prediction 0.602099073196052 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096342 chr16:30096341 synonymous SNV . 0 20 hm7G_associated_SNPs_13419 0 0 1 1 1 PPP4C chr16:30096254 3'AG 30096254 Downstream 88bp 12861 chr17 38445734 38445734 1 + G T LUSC 38445735 + 38445715 38445755 41 CCAAAAAGGAAGCTGTCTCGGGCATTGAACAAAGCTAAAAA CCAAAAAGGAAGCTGTCTCTGGCATTGAACAAAGCTAAAAA < 41bp 0.503125426260282 0.804173997020277 NA NA prediction 0.60209714151999 Functional Gain - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38445735 chr17:38445734 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_13420 0 0 1 0 1 CDC6 chr17:38445660 3'AG 38445660 Downstream 75bp 12862 chr5 131606680 131606680 1 + G T UCEC 131606681 + 131606661 131606701 41 AGATGGCAGACCAAGCCTGGGATCTCCATATGGACAACCCC AGATGGCAGACCAAGCCTGTGATCTCCATATGGACAACCCC < 41bp 0.461494765296607 0.801027088661553 NA NA prediction 0.602054177323106 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131606681 chr5:131606680 stopgain 0.993 0 20 hm7G_associated_SNPs_13421 0 0 0 0 1 PDLIM4 chr5:131606608 3'AG 131606608 Downstream 73bp 12863 chr2 216960920 216960920 1 + G T UCEC 216960921 + 216960901 216960941 41 GAGATCAGCCTAAAGAGGAGGAGGGAGATGATTTCCTAGAC GAGATCAGCCTAAAGAGGATGAGGGAGATGATTTCCTAGAC < 41bp 0.504066178515461 0.805085514698866 NA NA prediction 0.60203867236681 Functional Gain - TMEM169 ENSG00000163449 CDS Human protein_coding chr2:216960921 chr2:216960920 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_13422 0 0 0 0 1 TMEM169 chr2:216960957 5'GT 216960957 Upstream 38bp 12864 chr2 27303045 27303045 1 + G T BLCA 27303046 + 27303026 27303066 41 TGTGCCTACGTGGTGACCCGGACAGTGAGCTGTGTCCTTGA TGTGCCTACGTGGTGACCCTGACAGTGAGCTGTGTCCTTGA < 41bp 0.490950852956603 0.801018468173964 NA NA prediction 0.602036936347928 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27303046 chr2:27303045 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_13423 0 0 1 0 2 EMILIN1 chr2:27303019 3'AG 27303019 Downstream 27bp 12865 chr2 27303045 27303045 1 + G T BLCA 27303046 + 27303026 27303066 41 TGTGCCTACGTGGTGACCCGGACAGTGAGCTGTGTCCTTGA TGTGCCTACGTGGTGACCCTGACAGTGAGCTGTGTCCTTGA < 41bp 0.490950852956603 0.801018468173964 NA NA prediction 0.602036936347928 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27303046 chr2:27303045 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_13423 0 0 1 0 2 EMILIN1 chr2:27303138 5'GT 27303138 Upstream 94bp 12866 chr19 51631242 51631242 1 + G T HNSC 51631243 + 51631223 51631263 41 GTGACTCAGGGGGTGGTCGGGGGAGCTGGAGCCACAGCCCT GTGACTCAGGGGGTGGTCGTGGGAGCTGGAGCCACAGCCCT < 41bp 0.4885932009668 0.801016800725208 NA NA prediction 0.602033601450416 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51631243 chr19:51631242 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_13424 0 0 0 0 2 SIGLEC9 chr19:51631206 3'AG 51631206 Downstream 37bp 12867 chr19 51631242 51631242 1 + G T HNSC 51631243 + 51631223 51631263 41 GTGACTCAGGGGGTGGTCGGGGGAGCTGGAGCCACAGCCCT GTGACTCAGGGGGTGGTCGTGGGAGCTGGAGCCACAGCCCT < 41bp 0.4885932009668 0.801016800725208 NA NA prediction 0.602033601450416 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51631243 chr19:51631242 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_13424 0 0 0 0 2 SIGLEC9 chr19:51631296 5'GT 51631296 Upstream 55bp 12868 chr20 43610520 43610520 1 + G T GBM 43610521 + 43610501 43610541 41 TTTAAGAACACAGACTTATGGATCGTTATGGAGTACTGTGG TTTAAGAACACAGACTTATTGATCGTTATGGAGTACTGTGG < 41bp 0.493544590389486 0.800981234379273 NA NA prediction 0.601962468758546 Functional Gain - STK4 ENSG00000101109 CDS Human protein_coding chr20:43610521 chr20:43610520 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13426 0 0 1 0 2 STK4 chr20:43610470 3'AG 43610470 Downstream 51bp 12869 chr20 43610520 43610520 1 + G T GBM 43610521 + 43610501 43610541 41 TTTAAGAACACAGACTTATGGATCGTTATGGAGTACTGTGG TTTAAGAACACAGACTTATTGATCGTTATGGAGTACTGTGG < 41bp 0.493544590389486 0.800981234379273 NA NA prediction 0.601962468758546 Functional Gain - STK4 ENSG00000101109 CDS Human protein_coding chr20:43610521 chr20:43610520 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13426 0 0 1 0 2 STK4 chr20:43610584 5'GT 43610584 Upstream 65bp 12870 chr6 348120 348120 1 + G T LUAD 348121 + 348101 348141 41 AGCCTGGCCGGGGTCTCCAGGAGCGTGACACTGGTGATCGC AGCCTGGCCGGGGTCTCCATGAGCGTGACACTGGTGATCGC < 41bp 0.482899737252709 0.800979630339842 NA NA prediction 0.601959260679684 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348121 chr6:348120 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_13427 0 0 1 0 1 DUSP22 chr6:348103 3'AG 348103 Downstream 18bp 12871 chr16 20432712 20432712 1 + G T LUAD 20432713 + 20432693 20432733 41 GCTACGGACTGGGTTTTGTGGCCAGCGGAAGGTACCAGAGC GCTACGGACTGGGTTTTGTTGCCAGCGGAAGGTACCAGAGC < 41bp 0.523367614647167 0.82433318320794 NA NA prediction 0.601931137121547 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432713 chr16:20432712 synonymous SNV . 0 20 hm7G_associated_SNPs_13430 0 0 0 0 1 ACSM5 chr16:20432723 5'GT 20432723 Upstream 12bp 12872 chr11 117975456 117975456 1 + G T STAD 117975457 + 117975437 117975477 41 GGTGCTGGACTCGGCCACAGGGAACTGGTTCTCTGCCTGTT GGTGCTGGACTCGGCCACATGGAACTGGTTCTCTGCCTGTT < 41bp 0.48378962111231 0.80096339819068 NA NA prediction 0.60192679638136 Functional Gain - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117975457 chr11:117975456 nonsynonymous SNV 0.652 1 20 hm7G_associated_SNPs_13431 0 0 0 0 2 TMPRSS4 chr11:117975406 3'AG 117975406 Downstream 51bp 12873 chr11 117975456 117975456 1 + G T STAD 117975457 + 117975437 117975477 41 GGTGCTGGACTCGGCCACAGGGAACTGGTTCTCTGCCTGTT GGTGCTGGACTCGGCCACATGGAACTGGTTCTCTGCCTGTT < 41bp 0.48378962111231 0.80096339819068 NA NA prediction 0.60192679638136 Functional Gain - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117975457 chr11:117975456 nonsynonymous SNV 0.652 1 20 hm7G_associated_SNPs_13431 0 0 0 0 2 TMPRSS4 chr11:117975535 5'GT 117975535 Upstream 80bp 12874 chr12 48877106 48877106 1 + G T UCEC 48877107 + 48877087 48877127 41 AGCATCCCTGCCAGGATCAGGAACAAAAGGTAGAAATGACC AGCATCCCTGCCAGGATCATGAACAAAAGGTAGAAATGACC < 41bp 0.502160735494353 0.803104650438071 NA NA prediction 0.601887829887435 Functional Gain - C12orf54 ENSG00000177627 CDS Human protein_coding chr12:48877107 chr12:48877106 nonsynonymous SNV 0.018 1 20 hm7G_associated_SNPs_13432 0 0 0 0 1 C12orf54 chr12:48877144 5'GT 48877144 Upstream 39bp 12875 chr1 20931469 20931469 1 + G T READ 20931470 + 20931450 20931490 41 CTGGGCATCTGTGCTGAACGGACCGCTATCCAGAAGGCCGT CTGGGCATCTGTGCTGAACTGACCGCTATCCAGAAGGCCGT < 41bp 0.521688047192177 0.822630647549798 NA NA prediction 0.601885200715242 Functional Gain - CDA ENSG00000158825 CDS Human protein_coding chr1:20931470 chr1:20931469 nonsynonymous SNV 0.966 4 20 hm7G_associated_SNPs_13433 0 0 0 0 1 CDA chr1:20931532 5'GT 20931532 Upstream 64bp 12876 chr1 236702377 236702377 1 + G T UCEC 236702378 + 236702358 236702398 41 TCGTGATTATGGTGCTGAAGGACAAATTCCAGGTAGGTTTT TCGTGATTATGGTGCTGAATGACAAATTCCAGGTAGGTTTT < 41bp 0.50065927551102 0.801601139897213 NA NA prediction 0.601883728772385 Functional Gain - LGALS8 ENSG00000116977 CDS Human protein_coding chr1:236702378 chr1:236702377 nonsynonymous SNV 0.757 1 20 hm7G_associated_SNPs_13434 0 0 1 0 1 LGALS8 chr1:236702389 5'GT 236702389 Upstream 13bp 12877 chr10 99361621 99361621 1 + G T rs61731946 99361622 + 99361602 99361642 41 TACTTCGTGCAGGAGCTGTGGGGGGCGTCTGCGCCCTGGCC TACTTCGTGCAGGAGCTGTTGGGGGCGTCTGCGCCCTGGCC < 41bp 0.480034936913643 0.800896276825727 NA NA prediction 0.601792553651455 Functional Gain - HOGA1 ENSG00000155252;ENSG00000241935;ENSG00000249967 CDS Human other chr10:99361622 chr10:99361621 synonymous SNV . 0 20 hm7G_associated_SNPs_13437 0 0 1 0 1 HOGA1 chr10:99361614 3'AG 99361614 Downstream 8bp 12878 chr16 4733878 4733878 1 + G T COAD 4733879 + 4733859 4733899 41 CCATTGAGAATGTCCTGCAGGACAGCAGCCCCGAGCACTGT CCATTGAGAATGTCCTGCATGACAGCAGCCCCGAGCACTGT < 41bp 0.525544793616492 0.826439431958632 NA NA prediction 0.601789276684281 Functional Gain - MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4733879 chr16:4733878 nonsynonymous SNV 0.038 3 20 hm7G_associated_SNPs_13438 0 0 1 0 2 MGRN1 chr16:4733844 3'AG 4733844 Downstream 35bp 12879 chr16 4733878 4733878 1 + G T COAD 4733879 + 4733859 4733899 41 CCATTGAGAATGTCCTGCAGGACAGCAGCCCCGAGCACTGT CCATTGAGAATGTCCTGCATGACAGCAGCCCCGAGCACTGT < 41bp 0.525544793616492 0.826439431958632 NA NA prediction 0.601789276684281 Functional Gain - MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4733879 chr16:4733878 nonsynonymous SNV 0.038 3 20 hm7G_associated_SNPs_13438 0 0 1 0 2 MGRN1 chr16:4733933 5'GT 4733933 Upstream 56bp 12880 chr1 65143878 65143878 1 + G T UCEC 65143879 + 65143859 65143899 41 TGGATTGTGAATGGTGCATGGTGGACAGTGATGGAAAGACT TGGATTGTGAATGGTGCATTGTGGACAGTGATGGAAAGACT < 41bp 0.503477086654052 0.804368030954042 NA NA prediction 0.601781888599979 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65143879 chr1:65143878 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13439 0 0 1 0 1 CACHD1 chr1:65143842 3'AG 65143842 Downstream 37bp 12881 chr2 207457445 207457445 1 + G T LUSC 207457446 + 207457426 207457466 41 TCCTTCTACCATCAAGGCCGGGTGATTGACTGCAGGTAACA TCCTTCTACCATCAAGGCCTGGTGATTGACTGCAGGTAACA < 41bp 0.497717047304692 0.800882905520449 NA NA prediction 0.601765811040899 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207457446 chr2:207457445 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_13440 0 0 0 0 1 ADAM23 chr2:207457460 5'GT 207457460 Upstream 16bp 12882 chr1 203045511 203045511 1 + G T THCA 203045512 + 203045492 203045532 41 CACATGCTCTCCGCCTTCCGGGACTAGCCATGGCCCCCAGG CACATGCTCTCCGCCTTCCTGGACTAGCCATGGCCCCCAGG < 41bp 0.508749709009528 0.809631727154114 NA NA prediction 0.601764036289172 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203045512 chr1:203045511 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13441 0 0 0 0 1 PPFIA4 chr1:203045469 3'AG 203045469 Downstream 43bp 12883 chr12 58009379 58009379 1 - C A THCA 58009378 - 58009358 58009398 41 ACGCGCCTCTCTCGACCTCGGGAAGACAGCAGCCCTCCAGC ACGCGCCTCTCTCGACCTCTGGAAGACAGCAGCCCTCCAGC < 41bp 0.508223076540107 0.809099468048587 NA NA prediction 0.601752783016961 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58009378 chr12:58009379 synonymous SNV . 0 20 hm7G_associated_SNPs_13442 0 0 0 0 1 ARHGEF25 chr12:58009435 3'AG 58009435 Downstream 57bp 12884 chr19 15648369 15648369 1 + G T STAD 15648370 + 15648350 15648390 41 TGGGCTGCTGCTCAGCAAAGGTGACAAGTGGAGCCGGCACC TGGGCTGCTGCTCAGCAAATGTGACAAGTGGAGCCGGCACC < 41bp 0.489960976013322 0.800875624156163 NA NA prediction 0.601751248312327 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15648370 chr19:15648369 nonsynonymous SNV 0.223 4 20 hm7G_associated_SNPs_13443 0 0 0 0 1 CYP4F22 chr19:15648346 3'AG 15648346 Downstream 24bp 12885 chr20 31022332 31022332 1 + G T LUSC 31022333 + 31022313 31022353 41 ACCACGGAGTCCTCCTGCCGGGGTTGGACTGGCGCCAGGAC ACCACGGAGTCCTCCTGCCTGGGTTGGACTGGCGCCAGGAC < 41bp 0.489832055514587 0.800873825921761 NA NA prediction 0.601747651843522 Functional Gain - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31022333 chr20:31022332 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13444 0 0 1 0 1 ASXL1 chr20:31022235 3'AG 31022235 Downstream 98bp 12886 chr2 143643019 143643019 1 + G T UCEC 143643020 + 143643000 143643040 41 TGCCACCCAACGGATGAGAGGGTGGCTCTCCACCTAGATGA TGCCACCCAACGGATGAGATGGTGGCTCTCCACCTAGATGA < 41bp 0.48852157567344 0.800861874871811 NA NA prediction 0.601723749743622 Functional Gain - KYNU ENSG00000115919 CDS Human protein_coding chr2:143643020 chr2:143643019 nonsynonymous SNV 0.908 1 20 hm7G_associated_SNPs_13446 0 0 1 0 1 KYNU chr2:143643105 5'GT 143643105 Upstream 87bp 12887 chr3 184060596 184060596 1 + G T UCEC 184060597 + 184060577 184060617 41 GGTCTTCGGTGGATGGCGAGGACTCCACTGATGACTCCTAT GGTCTTCGGTGGATGGCGATGACTCCACTGATGACTCCTAT < 41bp 0.481968970347552 0.800851976358431 NA NA prediction 0.601703952716861 Functional Gain - FAM131A ENSG00000175182 CDS Human protein_coding chr3:184060597 chr3:184060596 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_13447 0 0 1 0 2 FAM131A chr3:184060532 3'AG 184060532 Downstream 65bp 12888 chr3 184060596 184060596 1 + G T UCEC 184060597 + 184060577 184060617 41 GGTCTTCGGTGGATGGCGAGGACTCCACTGATGACTCCTAT GGTCTTCGGTGGATGGCGATGACTCCACTGATGACTCCTAT < 41bp 0.481968970347552 0.800851976358431 NA NA prediction 0.601703952716861 Functional Gain - FAM131A ENSG00000175182 CDS Human protein_coding chr3:184060597 chr3:184060596 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_13447 0 0 1 0 2 FAM131A chr3:184060648 5'GT 184060648 Upstream 53bp 12889 chr19 44732672 44732672 1 + G T COAD 44732673 + 44732653 44732693 41 CTGCTCGATCTTACCCAGAGGAAGCTGTACCGAGATGTCAT CTGCTCGATCTTACCCAGATGAAGCTGTACCGAGATGTCAT < 41bp 0.501408200165792 0.80224460712391 NA NA prediction 0.601672813916236 Functional Gain - ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732673 chr19:44732672 nonsynonymous SNV 0.888 2 20 hm7G_associated_SNPs_13448 0 0 1 0 3 ZNF227 chr19:44732599 3'AG 44732599 Downstream 74bp 12890 chr19 44732672 44732672 1 + G T COAD 44732673 + 44732653 44732693 41 CTGCTCGATCTTACCCAGAGGAAGCTGTACCGAGATGTCAT CTGCTCGATCTTACCCAGATGAAGCTGTACCGAGATGTCAT < 41bp 0.501408200165792 0.80224460712391 NA NA prediction 0.601672813916236 Functional Gain - ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732673 chr19:44732672 nonsynonymous SNV 0.888 2 20 hm7G_associated_SNPs_13448 0 0 1 0 3 ZNF227 chr19:44732640 3'AG 44732640 Downstream 33bp 12891 chr19 44732672 44732672 1 + G T COAD 44732673 + 44732653 44732693 41 CTGCTCGATCTTACCCAGAGGAAGCTGTACCGAGATGTCAT CTGCTCGATCTTACCCAGATGAAGCTGTACCGAGATGTCAT < 41bp 0.501408200165792 0.80224460712391 NA NA prediction 0.601672813916236 Functional Gain - ZNF227 ENSG00000131115 CDS Human protein_coding chr19:44732673 chr19:44732672 nonsynonymous SNV 0.888 2 20 hm7G_associated_SNPs_13448 0 0 1 0 3 ZNF227 chr19:44732725 5'GT 44732725 Upstream 54bp 12892 chrX 7177396 7177396 1 + G T LUSC 7177397 + 7177377 7177417 41 TTTGTCTTCTCAGGGAAATGGCACCTTGGGATGAGCTGTCA TTTGTCTTCTCAGGGAAATTGCACCTTGGGATGAGCTGTCA < 41bp 0.512263882197772 0.813099951361288 NA NA prediction 0.601672138327032 Functional Gain - STS ENSG00000101846 CDS Human protein_coding chrX:7177397 chrX:7177396 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_13449 0 0 0 0 1 STS chrX:7177390 3'AG 7177390 Downstream 7bp 12893 chr17 78169103 78169103 1 + G T UCEC 78169104 + 78169084 78169124 41 TGTACAAGCGGGTGGCCGAGGACTTCGGGGAAGAACCCTGG TGTACAAGCGGGTGGCCGATGACTTCGGGGAAGAACCCTGG < 41bp 0.47927752915913 0.800828137628 NA NA prediction 0.601656275256 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78169104 chr17:78169103 stopgain 0.434 0 20 hm7G_associated_SNPs_13450 0 0 0 0 1 CARD14 chr17:78169132 5'GT 78169132 Upstream 30bp 12894 chr2 74643206 74643206 1 - C A LIHC 74643205 - 74643185 74643225 41 GGAGGGCGAGGACGTCGTAGGGGACATCTTGGCCGACTTGC GGAGGGCGAGGACGTCGTATGGGACATCTTGGCCGACTTGC < 41bp 0.498183742115602 0.800827738451811 NA NA prediction 0.601655476903621 Functional Gain - C2orf81 ENSG00000159239 CDS Human protein_coding chr2:74643205 chr2:74643206 nonsynonymous SNV 0.814 3 20 hm7G_associated_SNPs_13451 0 0 0 0 1 C2orf81 chr2:74643138 5'GT 74643138 Upstream 69bp 12895 chr12 56487279 56487279 1 + G T THYM 56487280 + 56487260 56487300 41 ACTGGACCAAGGTGCTTCGGGGGCCTACGGAAGAGCGACTA ACTGGACCAAGGTGCTTCGTGGGCCTACGGAAGAGCGACTA < 41bp 0.474379977970688 0.80081596201261 NA NA prediction 0.60163192402522 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56487280 chr12:56487279 synonymous SNV . 0 20 hm7G_associated_SNPs_13453 0 0 1 0 1 ERBB3 chr12:56487334 5'GT 56487334 Upstream 56bp 12896 chr11 117214946 117214946 1 + G T KICH 117214947 + 117214927 117214967 41 AACCAGAACTGATGTGGCTGGCGCGAGAGGGCATCGTGGCC AACCAGAACTGATGTGGCTTGCGCGAGAGGGCATCGTGGCC < 41bp 0.50606445814256 0.806879483000789 NA NA prediction 0.601630049716459 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117214947 chr11:117214946 synonymous SNV . 0 20 hm7G_associated_SNPs_13454 0 0 1 0 2 CEP164 chr11:117214882 3'AG 117214882 Downstream 65bp 12897 chr11 117214946 117214946 1 + G T KICH 117214947 + 117214927 117214967 41 AACCAGAACTGATGTGGCTGGCGCGAGAGGGCATCGTGGCC AACCAGAACTGATGTGGCTTGCGCGAGAGGGCATCGTGGCC < 41bp 0.50606445814256 0.806879483000789 NA NA prediction 0.601630049716459 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117214947 chr11:117214946 synonymous SNV . 0 20 hm7G_associated_SNPs_13454 0 0 1 0 2 CEP164 chr11:117214993 5'GT 117214993 Upstream 48bp 12898 chr11 124005676 124005676 1 + G T COAD 124005677 + 124005657 124005697 41 CTCCACCAGCCTAATAAAAGGTATTGCCCGGGCATCAGGGG CTCCACCAGCCTAATAAAATGTATTGCCCGGGCATCAGGGG < 41bp 0.522510526296532 0.823325034817574 NA NA prediction 0.601629017042083 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124005677 chr11:124005676 nonsynonymous SNV 0.736 3 20 hm7G_associated_SNPs_13455 0 0 0 0 2 VWA5A chr11:124005627 3'AG 124005627 Downstream 50bp 12899 chr11 124005676 124005676 1 + G T COAD 124005677 + 124005657 124005697 41 CTCCACCAGCCTAATAAAAGGTATTGCCCGGGCATCAGGGG CTCCACCAGCCTAATAAAATGTATTGCCCGGGCATCAGGGG < 41bp 0.522510526296532 0.823325034817574 NA NA prediction 0.601629017042083 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124005677 chr11:124005676 nonsynonymous SNV 0.736 3 20 hm7G_associated_SNPs_13455 0 0 0 0 2 VWA5A chr11:124005741 5'GT 124005741 Upstream 66bp 12900 chr15 45427447 45427447 1 + G T COAD 45427448 + 45427428 45427468 41 CCTTCCAGAGAAGCCGCTGGGACCCCGAGACCGGACGGAGT CCTTCCAGAGAAGCCGCTGTGACCCCGAGACCGGACGGAGT < 41bp 0.482521916450204 0.800801162490126 NA NA prediction 0.601602324980251 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427448 chr15:45427447 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13457 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 43bp 12901 chr1 158152875 158152875 1 + G T BLCA 158152876 + 158152856 158152896 41 ACCCTGGATGTGGTGGCTGGGGAGGCAGCTGGCCTGTCCTG ACCCTGGATGTGGTGGCTGTGGAGGCAGCTGGCCTGTCCTG < 41bp 0.525987359536702 0.826776646365065 NA NA prediction 0.601578573656726 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152876 chr1:158152875 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_13459 0 0 0 0 1 CD1D chr1:158152946 5'GT 158152946 Upstream 72bp 12902 chr5 75979002 75979002 1 + G T LUAD 75979003 + 75978983 75979023 41 ACTTACTGAGTGAATTGCTGGGGTCGCTGGGAGAGGTGCCA ACTTACTGAGTGAATTGCTTGGGTCGCTGGGAGAGGTGCCA < 41bp 0.523210063390642 0.823982154379944 NA NA prediction 0.601544181978603 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75979003 chr5:75979002 synonymous SNV . 0 20 hm7G_associated_SNPs_13460 0 0 1 0 2 IQGAP2 chr5:75978940 3'AG 75978940 Downstream 63bp 12903 chr5 75979002 75979002 1 + G T LUAD 75979003 + 75978983 75979023 41 ACTTACTGAGTGAATTGCTGGGGTCGCTGGGAGAGGTGCCA ACTTACTGAGTGAATTGCTTGGGTCGCTGGGAGAGGTGCCA < 41bp 0.523210063390642 0.823982154379944 NA NA prediction 0.601544181978603 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75979003 chr5:75979002 synonymous SNV . 0 20 hm7G_associated_SNPs_13460 0 0 1 0 2 IQGAP2 chr5:75979042 5'GT 75979042 Upstream 41bp 12904 chr9 100413618 100413618 1 + G T STAD 100413619 + 100413599 100413639 41 CAGTTAGTGAGCTATCCAGGGAAGAACAAGATCCCCTTGAA CAGTTAGTGAGCTATCCAGTGAAGAACAAGATCCCCTTGAA < 41bp 0.512664701285524 0.813436449983388 NA NA prediction 0.601543497395728 Functional Gain - NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100413619 chr9:100413618 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13461 0 0 1 0 2 NCBP1 chr9:100413592 3'AG 100413592 Downstream 27bp 12905 chr9 100413618 100413618 1 + G T STAD 100413619 + 100413599 100413639 41 CAGTTAGTGAGCTATCCAGGGAAGAACAAGATCCCCTTGAA CAGTTAGTGAGCTATCCAGTGAAGAACAAGATCCCCTTGAA < 41bp 0.512664701285524 0.813436449983388 NA NA prediction 0.601543497395728 Functional Gain - NCBP1 ENSG00000136937 CDS Human protein_coding chr9:100413619 chr9:100413618 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13461 0 0 1 0 2 NCBP1 chr9:100413655 5'GT 100413655 Upstream 38bp 12906 chr11 64940166 64940166 1 + G T UCEC 64940167 + 64940147 64940187 41 CCTCCCAGGTCATGGCAAAGGAGCCATTCCACTGGGCTTGG CCTCCCAGGTCATGGCAAATGAGCCATTCCACTGGGCTTGG < 41bp 0.510882130666356 0.811650584348722 NA NA prediction 0.601536907364732 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64940167 chr11:64940166 nonsynonymous SNV 0.833 1 20 hm7G_associated_SNPs_13463 0 0 1 0 1 SPDYC chr11:64940155 3'AG 64940155 Downstream 12bp 12907 chr3 13649600 13649600 1 + G T LUAD 13649601 + 13649581 13649621 41 CGAGACTTGCTGCGCAGCCGGACAGCAGTGGGCCATTGACA CGAGACTTGCTGCGCAGCCTGACAGCAGTGGGCCATTGACA < 41bp 0.480108397143198 0.800744070982012 NA NA prediction 0.601488141964024 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13649601 chr3:13649600 stopgain 0.383 1 20 hm7G_associated_SNPs_13465 0 0 0 0 2 FBLN2 chr3:13649562 3'AG 13649562 Downstream 39bp 12908 chr3 13649600 13649600 1 + G T LUAD 13649601 + 13649581 13649621 41 CGAGACTTGCTGCGCAGCCGGACAGCAGTGGGCCATTGACA CGAGACTTGCTGCGCAGCCTGACAGCAGTGGGCCATTGACA < 41bp 0.480108397143198 0.800744070982012 NA NA prediction 0.601488141964024 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13649601 chr3:13649600 stopgain 0.383 1 20 hm7G_associated_SNPs_13465 0 0 0 0 2 FBLN2 chr3:13649673 5'GT 13649673 Upstream 74bp 12909 chr11 59857292 59857292 1 + G T rs371960706 59857293 + 59857273 59857313 41 AAAAGAGCAGGAGTTCCTGGGGGTGAGTGAGCCTCCTCCAA AAAAGAGCAGGAGTTCCTGTGGGTGAGTGAGCCTCCTCCAA < 41bp 0.503822336197333 0.804553320692811 NA NA prediction 0.601461968990955 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59857293 chr11:59857292 nonsynonymous SNV 0.602 4 20 hm7G_associated_SNPs_13466 0 0 0 0 1 MS4A2 chr11:59857294 5'GT 59857294 Upstream 3bp 12910 chr3 138091797 138091797 1 + G T LAML 138091798 + 138091778 138091818 41 TGGTGGGGGATGGGGGTGTGGGCAAAAGTGCCCTCACCATC TGGTGGGGGATGGGGGTGTTGGCAAAAGTGCCCTCACCATC < 41bp 0.487831431371851 0.800730193024786 NA NA prediction 0.601460386049573 Functional Gain - MRAS ENSG00000158186 CDS Human protein_coding chr3:138091798 chr3:138091797 synonymous SNV . 0 20 hm7G_associated_SNPs_13467 0 0 0 0 1 MRAS chr3:138091708 3'AG 138091708 Downstream 90bp 12911 chr16 69148319 69148319 1 + G T THCA 69148320 + 69148300 69148340 41 ATGGCCTTCAACGTGGAGCGGGCCTGCCAGTCCTACTTTGG ATGGCCTTCAACGTGGAGCTGGCCTGCCAGTCCTACTTTGG < 41bp 0.508997365967323 0.809713494767431 NA NA prediction 0.601432257600215 Functional Gain - HAS3 ENSG00000103044 CDS Human protein_coding chr16:69148320 chr16:69148319 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13468 0 0 0 0 1 HAS3 chr16:69148246 3'AG 69148246 Downstream 74bp 12912 chr11 94564665 94564665 1 + G T UCEC 94564666 + 94564646 94564686 41 ATCCAGCAGGGAATACGAAGGGCATGAAGACAAAGCTGCAG ATCCAGCAGGGAATACGAATGGCATGAAGACAAAGCTGCAG < 41bp 0.534042467906915 0.834736551382088 NA NA prediction 0.601388166950345 Functional Gain - AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94564666 chr11:94564665 nonsynonymous SNV 0.070 4 20 hm7G_associated_SNPs_13469 0 0 1 0 1 AMOTL1 chr11:94564618 3'AG 94564618 Downstream 48bp 12913 chr2 209345847 209345847 1 + G T LUAD 209345848 + 209345828 209345868 41 GTTCTAGCTACCAAAATCTGGGAGACCAATGCAGTTGGGCA GTTCTAGCTACCAAAATCTTGGAGACCAATGCAGTTGGGCA < 41bp 0.501009904762309 0.801695371496101 NA NA prediction 0.601370933467585 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209345848 chr2:209345847 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_13470 0 0 0 0 2 PTH2R chr2:209345795 3'AG 209345795 Downstream 53bp 12914 chr2 209345847 209345847 1 + G T LUAD 209345848 + 209345828 209345868 41 GTTCTAGCTACCAAAATCTGGGAGACCAATGCAGTTGGGCA GTTCTAGCTACCAAAATCTTGGAGACCAATGCAGTTGGGCA < 41bp 0.501009904762309 0.801695371496101 NA NA prediction 0.601370933467585 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209345848 chr2:209345847 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_13470 0 0 0 0 2 PTH2R chr2:209345889 5'GT 209345889 Upstream 43bp 12915 chr19 39760271 39760271 1 + G T LUSC 39760272 + 39760252 39760292 41 ATATCCTCTCCCAGTTCCGGGCCTGTGTGAGTCGTTGGGGC ATATCCTCTCCCAGTTCCGTGCCTGTGTGAGTCGTTGGGGC < 41bp 0.520147839006775 0.820820515283549 NA NA prediction 0.601345352553548 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39760272 chr19:39760271 synonymous SNV . 0 20 hm7G_associated_SNPs_13472 0 0 0 0 1 IFNL2 chr19:39760277 5'GT 39760277 Upstream 7bp 12916 chr12 53684700 53684700 1 + G T COAD 53684701 + 53684681 53684721 41 GCCGTCCAGTGAGGAGCCCGGCCCTGCCCAGGAGGCCTCCC GCCGTCCAGTGAGGAGCCCTGCCCTGCCCAGGAGGCCTCCC < 41bp 0.540297616687178 0.840946049695276 NA NA prediction 0.601296866016195 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53684701 chr12:53684700 nonsynonymous SNV 0.024 1 20 hm7G_associated_SNPs_13474 0 0 1 0 2 ESPL1 chr12:53684625 3'AG 53684625 Downstream 76bp 12917 chr12 53684700 53684700 1 + G T COAD 53684701 + 53684681 53684721 41 GCCGTCCAGTGAGGAGCCCGGCCCTGCCCAGGAGGCCTCCC GCCGTCCAGTGAGGAGCCCTGCCCTGCCCAGGAGGCCTCCC < 41bp 0.540297616687178 0.840946049695276 NA NA prediction 0.601296866016195 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53684701 chr12:53684700 nonsynonymous SNV 0.024 1 20 hm7G_associated_SNPs_13474 0 0 1 0 2 ESPL1 chr12:53684780 5'GT 53684780 Upstream 81bp 12918 chr6 44198590 44198590 1 + G T LUSC 44198591 + 44198571 44198611 41 GCTCAAGCTTGAAGGACCCGGGGAGCAGGAGACCAAGTTGG GCTCAAGCTTGAAGGACCCTGGGAGCAGGAGACCAAGTTGG < 41bp 0.5275942220002 0.828238332092183 NA NA prediction 0.601288220183966 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198591 chr6:44198590 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_13475 0 0 1 0 2 SLC29A1 chr6:44198548 3'AG 44198548 Downstream 43bp 12919 chr6 44198590 44198590 1 + G T LUSC 44198591 + 44198571 44198611 41 GCTCAAGCTTGAAGGACCCGGGGAGCAGGAGACCAAGTTGG GCTCAAGCTTGAAGGACCCTGGGAGCAGGAGACCAAGTTGG < 41bp 0.5275942220002 0.828238332092183 NA NA prediction 0.601288220183966 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198591 chr6:44198590 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_13475 0 0 1 0 2 SLC29A1 chr6:44198626 5'GT 44198626 Upstream 37bp 12920 chr1 160719708 160719708 1 + G T UCEC 160719709 + 160719689 160719729 41 GCATGGAACATGGGGAAGAGGATGTGATTTATACCTGGAAG GCATGGAACATGGGGAAGATGATGTGATTTATACCTGGAAG < 41bp 0.493385088695737 0.800637605576531 NA NA prediction 0.601275211153062 Functional Gain - SLAMF7 ENSG00000026751 CDS Human protein_coding chr1:160719709 chr1:160719708 nonsynonymous SNV 0.129 0 20 hm7G_associated_SNPs_13476 0 0 0 0 1 SLAMF7 chr1:160719611 3'AG 160719611 Downstream 98bp 12921 chr1 160318809 160318809 1 + G T UCEC 160318810 + 160318790 160318830 41 TTCAATTAGTGGAGACACAGGGGTTATCCACGTAGTAGAGA TTCAATTAGTGGAGACACATGGGTTATCCACGTAGTAGAGA < 41bp 0.525373271842938 0.825989234351942 NA NA prediction 0.601231925018008 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160318810 chr1:160318809 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_13477 0 0 1 0 1 NCSTN chr1:160318789 3'AG 160318789 Downstream 21bp 12922 chr10 135194974 135194974 1 + G T UCEC 135194975 + 135194955 135194995 41 TCTTTCTAGGGGCTATCAAGGACTCACAAACTGCATGATGG TCTTTCTAGGGGCTATCAATGACTCACAAACTGCATGATGG < 41bp 0.507616469216941 0.808231111486767 NA NA prediction 0.601229284539653 Functional Gain - PAOX ENSG00000148832 CDS Human protein_coding chr10:135194975 chr10:135194974 stopgain 0.967 1 20 hm7G_associated_SNPs_13478 0 0 0 0 1 PAOX chr10:135194964 3'AG 135194964 Downstream 11bp 12923 chr9 71006611 71006611 1 + G T SKCM 71006612 + 71006592 71006632 41 AATGAAAGGAGGAGAATATGGATTTGGAGCTGCATTTGATG AATGAAAGGAGGAGAATATTGATTTGGAGCTGCATTTGATG < 41bp 0.52305559248351 0.823646208678978 NA NA prediction 0.601181232390938 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71006612 chr9:71006611 stopgain 1.000 1 20 hm7G_associated_SNPs_13479 0 0 0 0 1 PGM5 chr9:71006640 5'GT 71006640 Upstream 30bp 12924 chr2 191353520 191353520 1 + G T COAD 191353521 + 191353501 191353541 41 AGGATGTGGTGCCATGATCGGAGGCGTGTTAGTCAATTATT AGGATGTGGTGCCATGATCTGAGGCGTGTTAGTCAATTATT < 41bp 0.497139703915228 0.800584238457836 NA NA prediction 0.601168476915671 Functional Gain - MFSD6 ENSG00000151690 CDS Human protein_coding chr2:191353521 chr2:191353520 stopgain 0.990 1 20 hm7G_associated_SNPs_13480 0 0 1 0 1 MFSD6 chr2:191353544 5'GT 191353544 Upstream 25bp 12925 chr10 22680768 22680768 1 + G T BRCA 22680769 + 22680749 22680789 41 ACACTCCTGAACACGCACGGGCTGTTGCAGTCACAAATACT ACACTCCTGAACACGCACGTGCTGTTGCAGTCACAAATACT < 41bp 0.53168777689883 0.83227040640862 NA NA prediction 0.601165259019579 Functional Gain - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22680769 chr10:22680768 synonymous SNV . 0 20 hm7G_associated_SNPs_13481 0 0 0 0 1 SPAG6 chr10:22680849 5'GT 22680849 Upstream 82bp 12926 chr2 157352682 157352682 1 + G T UCEC 157352683 + 157352663 157352703 41 TGATATCCTTGTTATTGGAGGAGGAGCAACAGGAAGTGGCT TGATATCCTTGTTATTGGATGAGGAGCAACAGGAAGTGGCT < 41bp 0.500754958853219 0.801319262348634 NA NA prediction 0.601128606990829 Functional Gain - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157352683 chr2:157352682 stopgain 1.000 1 20 hm7G_associated_SNPs_13483 0 0 1 0 1 GPD2 chr2:157352727 5'GT 157352727 Upstream 46bp 12927 chrX 107920783 107920783 1 + G T UCEC 107920784 + 107920764 107920804 41 TGGAAATGGAGGTATTAAAGGAGAGAAGGGAAATCCAGGCC TGGAAATGGAGGTATTAAATGAGAGAAGGGAAATCCAGGCC < 41bp 0.506209672507219 0.806725843032124 NA NA prediction 0.60103234104981 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107920784 chrX:107920783 stopgain 1.000 1 20 hm7G_associated_SNPs_13485 0 0 0 0 2 COL4A5 chrX:107920730 3'AG 107920730 Downstream 54bp 12928 chrX 107920783 107920783 1 + G T UCEC 107920784 + 107920764 107920804 41 TGGAAATGGAGGTATTAAAGGAGAGAAGGGAAATCCAGGCC TGGAAATGGAGGTATTAAATGAGAGAAGGGAAATCCAGGCC < 41bp 0.506209672507219 0.806725843032124 NA NA prediction 0.60103234104981 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107920784 chrX:107920783 stopgain 1.000 1 20 hm7G_associated_SNPs_13485 0 0 0 0 2 COL4A5 chrX:107920863 5'GT 107920863 Upstream 81bp 12929 chr9 131479176 131479176 1 + G T UCEC 131479177 + 131479157 131479197 41 TCATGATGCAGATCCACGAGGATGTCTTCCCCGAGCCCCAG TCATGATGCAGATCCACGATGATGTCTTCCCCGAGCCCCAG < 41bp 0.540432266949516 0.840926227530949 NA NA prediction 0.600987921162867 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131479177 chr9:131479176 nonsynonymous SNV 0.972 0 20 hm7G_associated_SNPs_13486 0 0 1 0 1 PKN3 chr9:131479202 5'GT 131479202 Upstream 27bp 12930 chr19 49900952 49900952 1 + G T GBM 49900953 + 49900933 49900973 41 CAACCTGGAGAGCTTCGGAGGCGAAGACCCCAGACCCGAGC CAACCTGGAGAGCTTCGGATGCGAAGACCCCAGACCCGAGC < 41bp 0.473408063199168 0.800492537530568 NA NA prediction 0.600985075061137 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49900953 chr19:49900952 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_13487 0 0 0 0 2 CCDC155 chr19:49900908 3'AG 49900908 Downstream 45bp 12931 chr19 49900952 49900952 1 + G T GBM 49900953 + 49900933 49900973 41 CAACCTGGAGAGCTTCGGAGGCGAAGACCCCAGACCCGAGC CAACCTGGAGAGCTTCGGATGCGAAGACCCCAGACCCGAGC < 41bp 0.473408063199168 0.800492537530568 NA NA prediction 0.600985075061137 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49900953 chr19:49900952 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_13487 0 0 0 0 2 CCDC155 chr19:49900974 5'GT 49900974 Upstream 23bp 12932 chr11 67164964 67164964 1 + G T SARC 67164965 + 67164945 67164985 41 TGTTCTTCGGCTCCATCCTGGCCCCTGTACGCTCCCCCCAG TGTTCTTCGGCTCCATCCTTGCCCCTGTACGCTCCCCCCAG < 41bp 0.49476283533551 0.800471262022264 NA NA prediction 0.600942524044527 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67164965 chr11:67164964 synonymous SNV . 0 20 hm7G_associated_SNPs_13488 0 0 1 0 1 RAD9A chr11:67164935 3'AG 67164935 Downstream 30bp 12933 chr6 43107258 43107258 1 + G T THCA 43107259 + 43107239 43107279 41 CCCACTATTAAGTGGGAACGGGCAGGTGGGTACAGTGCCGG CCCACTATTAAGTGGGAACTGGCAGGTGGGTACAGTGCCGG < 41bp 0.481480126145799 0.800468681592859 NA NA prediction 0.600937363185718 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43107259 chr6:43107258 nonsynonymous SNV 0.967 3 20 hm7G_associated_SNPs_13489 0 0 1 0 1 PTK7 chr6:43107263 5'GT 43107263 Upstream 6bp 12934 chr12 112926892 112926892 1 + G T LUAD 112926893 + 112926873 112926913 41 GGTCTCAGAGGTCAGGGATGGTCCAGACAGAAGCACAGTAC GGTCTCAGAGGTCAGGGATTGTCCAGACAGAAGCACAGTAC < 41bp 0.498815820205148 0.800464637652772 NA NA prediction 0.600929275305544 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926893 chr12:112926892 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13490 0 0 1 0 2 PTPN11 chr12:112926828 3'AG 112926828 Downstream 65bp 12935 chr12 112926892 112926892 1 + G T LUAD 112926893 + 112926873 112926913 41 GGTCTCAGAGGTCAGGGATGGTCCAGACAGAAGCACAGTAC GGTCTCAGAGGTCAGGGATTGTCCAGACAGAAGCACAGTAC < 41bp 0.498815820205148 0.800464637652772 NA NA prediction 0.600929275305544 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926893 chr12:112926892 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13490 0 0 1 0 2 PTPN11 chr12:112926979 5'GT 112926979 Upstream 88bp 12936 chr22 31658586 31658586 1 + G T COAD 31658587 + 31658567 31658607 41 GCTCTTGGCCACAGGTGGAGGATGCAATTAGCCAGACGAGC GCTCTTGGCCACAGGTGGATGATGCAATTAGCCAGACGAGC < 41bp 0.527370543830373 0.827821682336999 NA NA prediction 0.600902277013252 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658587 chr22:31658586 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_13492 0 0 1 0 1 LIMK2 chr22:31658581 3'AG 31658581 Downstream 6bp 12937 chr3 183908922 183908922 1 + G T COAD 183908923 + 183908903 183908943 41 TCCTGCAGGTTCCCTGATGGGTTTGAGAAGTTCTCGCCGCC TCCTGCAGGTTCCCTGATGTGTTTGAGAAGTTCTCGCCGCC < 41bp 0.509787934169809 0.810235992052326 NA NA prediction 0.600896115765033 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183908923 chr3:183908922 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_13493 0 0 1 0 1 ABCF3 chr3:183908911 3'AG 183908911 Downstream 12bp 12938 chr2 101592003 101592003 1 + G T LUSC 101592004 + 101591984 101592024 41 CCAAGAGTTACCTGTCCCCGGGCTCAGCCAGGCAGCCACCA CCAAGAGTTACCTGTCCCCTGGCTCAGCCAGGCAGCCACCA < 41bp 0.465221388291943 0.800434740549975 NA NA prediction 0.600869481099949 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101592004 chr2:101592003 nonsynonymous SNV 0.643 3 20 hm7G_associated_SNPs_13494 0 0 1 0 2 NPAS2 chr2:101591920 3'AG 101591920 Downstream 84bp 12939 chr2 101592003 101592003 1 + G T LUSC 101592004 + 101591984 101592024 41 CCAAGAGTTACCTGTCCCCGGGCTCAGCCAGGCAGCCACCA CCAAGAGTTACCTGTCCCCTGGCTCAGCCAGGCAGCCACCA < 41bp 0.465221388291943 0.800434740549975 NA NA prediction 0.600869481099949 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101592004 chr2:101592003 nonsynonymous SNV 0.643 3 20 hm7G_associated_SNPs_13494 0 0 1 0 2 NPAS2 chr2:101592029 5'GT 101592029 Upstream 27bp 12940 chr2 26672938 26672938 1 + G T STAD 26672939 + 26672919 26672959 41 AATGCTATCTGCTGAGGCTGGATGCCATCTTCTCCGTGAGT AATGCTATCTGCTGAGGCTTGATGCCATCTTCTCCGTGAGT < 41bp 0.513751951720751 0.814170018576056 NA NA prediction 0.600836133710609 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26672939 chr2:26672938 synonymous SNV . 0 20 hm7G_associated_SNPs_13495 0 0 0 0 2 DRC1 chr2:26672864 3'AG 26672864 Downstream 75bp 12941 chr2 26672938 26672938 1 + G T STAD 26672939 + 26672919 26672959 41 AATGCTATCTGCTGAGGCTGGATGCCATCTTCTCCGTGAGT AATGCTATCTGCTGAGGCTTGATGCCATCTTCTCCGTGAGT < 41bp 0.513751951720751 0.814170018576056 NA NA prediction 0.600836133710609 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26672939 chr2:26672938 synonymous SNV . 0 20 hm7G_associated_SNPs_13495 0 0 0 0 2 DRC1 chr2:26672953 5'GT 26672953 Upstream 16bp 12942 chr4 88363024 88363024 1 + G T LUAD 88363025 + 88363005 88363045 41 GGTGGGCCGGGGGCTTTTGGGGCGATGGGGCCCAAATCACG GGTGGGCCGGGGGCTTTTGTGGCGATGGGGCCCAAATCACG < 41bp 0.523240765941625 0.82364554244843 NA NA prediction 0.60080955301361 Functional Gain - NUDT9 ENSG00000170502 CDS Human protein_coding chr4:88363025 chr4:88363024 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13496 0 0 1 0 2 NUDT9 chr4:88362981 3'AG 88362981 Downstream 44bp 12943 chr4 88363024 88363024 1 + G T LUAD 88363025 + 88363005 88363045 41 GGTGGGCCGGGGGCTTTTGGGGCGATGGGGCCCAAATCACG GGTGGGCCGGGGGCTTTTGTGGCGATGGGGCCCAAATCACG < 41bp 0.523240765941625 0.82364554244843 NA NA prediction 0.60080955301361 Functional Gain - NUDT9 ENSG00000170502 CDS Human protein_coding chr4:88363025 chr4:88363024 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13496 0 0 1 0 2 NUDT9 chr4:88363067 5'GT 88363067 Upstream 44bp 12944 chr17 19284985 19284985 1 + G T PAAD 19284986 + 19284966 19285006 41 GCCCTGCTCAAGTCTTTGAGGAGCCGGCTCAGAGGTGCCTT GCCCTGCTCAAGTCTTTGATGAGCCGGCTCAGAGGTGCCTT < 41bp 0.526109221216222 0.826506404632038 NA NA prediction 0.600794366831633 Functional Gain - MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19284986 chr17:19284985 nonsynonymous SNV 0.186 3 20 hm7G_associated_SNPs_13497 0 0 1 0 1 MAPK7 chr17:19284999 5'GT 19284999 Upstream 15bp 12945 chr10 119017365 119017365 1 + G T LUSC 119017366 + 119017346 119017386 41 GAGCCAGCCCTGCCCATCTGGATGATGGAGACCATGTGTTC GAGCCAGCCCTGCCCATCTTGATGATGGAGACCATGTGTTC < 41bp 0.479667434584965 0.800378102011367 NA NA prediction 0.600756204022734 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119017366 chr10:119017365 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13498 0 0 0 0 2 SLC18A2 chr10:119017308 3'AG 119017308 Downstream 58bp 12946 chr10 119017365 119017365 1 + G T LUSC 119017366 + 119017346 119017386 41 GAGCCAGCCCTGCCCATCTGGATGATGGAGACCATGTGTTC GAGCCAGCCCTGCCCATCTTGATGATGGAGACCATGTGTTC < 41bp 0.479667434584965 0.800378102011367 NA NA prediction 0.600756204022734 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119017366 chr10:119017365 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13498 0 0 0 0 2 SLC18A2 chr10:119017403 5'GT 119017403 Upstream 39bp 12947 chr12 56532196 56532196 1 + G T LGG 56532197 + 56532177 56532217 41 CCCCTCCACAGGTGCTGCAGGTGAATAGTTTGATCCAGACT CCCCTCCACAGGTGCTGCATGTGAATAGTTTGATCCAGACT < 41bp 0.521947405501249 0.822320892263407 NA NA prediction 0.600746973524316 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532197 chr12:56532196 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_13499 0 0 0 0 2 ESYT1 chr12:56532188 3'AG 56532188 Downstream 9bp 12948 chr12 56532196 56532196 1 + G T LGG 56532197 + 56532177 56532217 41 CCCCTCCACAGGTGCTGCAGGTGAATAGTTTGATCCAGACT CCCCTCCACAGGTGCTGCATGTGAATAGTTTGATCCAGACT < 41bp 0.521947405501249 0.822320892263407 NA NA prediction 0.600746973524316 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56532197 chr12:56532196 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_13499 0 0 0 0 2 ESYT1 chr12:56532283 5'GT 56532283 Upstream 88bp 12949 chr7 44146212 44146212 1 + G T UCEC 44146213 + 44146193 44146233 41 AAGGCCCCAAGGTGCCCAAGGAGTCCTTGGAGGGGTCCCCC AAGGCCCCAAGGTGCCCAATGAGTCCTTGGAGGGGTCCCCC < 41bp 0.547600095926981 0.847958234578649 NA NA prediction 0.600716277303336 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44146213 chr7:44146212 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_13500 0 0 0 0 1 AEBP1 chr7:44146145 3'AG 44146145 Downstream 68bp 12950 chr19 42791817 42791817 1 + G T LGG 42791818 + 42791798 42791838 41 GACCGTCAGCAAGATCCTGGGCGAGTGGTGGTATGCCCTGG GACCGTCAGCAAGATCCTGTGCGAGTGGTGGTATGCCCTGG < 41bp 0.538559448262524 0.838906578618007 NA NA prediction 0.600694260710967 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42791818 chr19:42791817 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13501 0 0 1 0 1 CIC chr19:42791879 5'GT 42791879 Upstream 63bp 12951 chr3 129198747 129198747 1 + G T ESCA 129198748 + 129198728 129198768 41 GAAGAGAAGGCCTCTTAGTGGGGCTGAAGAATGGACAGGTG GAAGAGAAGGCCTCTTAGTTGGGCTGAAGAATGGACAGGTG < 41bp 0.496146926642399 0.800328716554 NA NA prediction 0.600657433108001 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129198748 chr3:129198747 synonymous SNV . 0 20 hm7G_associated_SNPs_13504 0 0 1 0 1 IFT122 chr3:129198765 5'GT 129198765 Upstream 19bp 12952 chr8 11295631 11295631 1 + G T SARC 11295632 + 11295612 11295652 41 AAGCCAGGCGGCCAGTGGAGGCCGGTAGTGCTGAATGGACA AAGCCAGGCGGCCAGTGGATGCCGGTAGTGCTGAATGGACA < 41bp 0.504855868685638 0.805129516633713 NA NA prediction 0.60054729589615 Functional Gain - FAM167A-AS1 ENSG00000184608 CDS Human antisense chr8:11295632 chr8:11295631 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_13507 0 0 0 0 2 FAM167A-AS1 chr8:11295549 3'AG 11295549 Downstream 83bp 12953 chr8 11295631 11295631 1 + G T SARC 11295632 + 11295612 11295652 41 AAGCCAGGCGGCCAGTGGAGGCCGGTAGTGCTGAATGGACA AAGCCAGGCGGCCAGTGGATGCCGGTAGTGCTGAATGGACA < 41bp 0.504855868685638 0.805129516633713 NA NA prediction 0.60054729589615 Functional Gain - FAM167A-AS1 ENSG00000184608 CDS Human antisense chr8:11295632 chr8:11295631 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_13507 0 0 0 0 2 FAM167A-AS1 chr8:11295719 5'GT 11295719 Upstream 89bp 12954 chr2 85595846 85595846 1 + G T LIHC 85595847 + 85595827 85595867 41 TCAGAGCCCAAGAAGAATGGGAAGCTGTGGACACCATCCAG TCAGAGCCCAAGAAGAATGTGAAGCTGTGGACACCATCCAG < 41bp 0.527277905475834 0.827551047794642 NA NA prediction 0.600546284637616 Functional Gain - ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85595847 chr2:85595846 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13508 0 0 1 0 2 ELMOD3 chr2:85595809 3'AG 85595809 Downstream 38bp 12955 chr2 85595846 85595846 1 + G T LIHC 85595847 + 85595827 85595867 41 TCAGAGCCCAAGAAGAATGGGAAGCTGTGGACACCATCCAG TCAGAGCCCAAGAAGAATGTGAAGCTGTGGACACCATCCAG < 41bp 0.527277905475834 0.827551047794642 NA NA prediction 0.600546284637616 Functional Gain - ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85595847 chr2:85595846 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13508 0 0 1 0 2 ELMOD3 chr2:85595877 5'GT 85595877 Upstream 32bp 12956 chr6 3105762 3105762 1 + G T LUAD 3105763 + 3105743 3105783 41 GTTCCCAGGGACTTGGGATGGGTCCTGTGGAGGAGTCCTGG GTTCCCAGGGACTTGGGATTGGTCCTGTGGAGGAGTCCTGG < 41bp 0.522654492368803 0.822923083693579 NA NA prediction 0.600537182649551 Functional Gain - RIPK1 ENSG00000137275 CDS Human protein_coding chr6:3105763 chr6:3105762 nonsynonymous SNV 0.026 0 20 hm7G_associated_SNPs_13509 0 0 0 0 1 RIPK1 chr6:3105716 3'AG 3105716 Downstream 47bp 12957 chr17 61619723 61619723 1 + G T LUAD 61619724 + 61619704 61619744 41 AGCGGGCAGATCTGCTGGAGGTGCTGGACATGTACCCGGCC AGCGGGCAGATCTGCTGGATGTGCTGGACATGTACCCGGCC < 41bp 0.524817149052899 0.825081468265672 NA NA prediction 0.600528638425544 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61619724 chr17:61619723 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_13510 0 0 0 0 1 KCNH6 chr17:61619795 5'GT 61619795 Upstream 73bp 12958 chr12 100790148 100790148 1 + G T COAD 100790149 + 100790129 100790169 41 CATGGGATGTGGAGTAAGTGGGCACCACCTTTGGAGAGAAG CATGGGATGTGGAGTAAGTTGGCACCACCTTTGGAGAGAAG < 41bp 0.53208546882706 0.832312423943785 NA NA prediction 0.600453910233451 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100790149 chr12:100790148 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_13515 0 0 0 0 1 SLC17A8 chr12:100790195 5'GT 100790195 Upstream 48bp 12959 chr2 112922727 112922727 1 + G T LUAD 112922728 + 112922708 112922748 41 TCCCAATGGCACCTGGACAGGGGAGCAGCCCCACTGTAGAG TCCCAATGGCACCTGGACATGGGAGCAGCCCCACTGTAGAG < 41bp 0.480011930653464 0.800222113792516 NA NA prediction 0.600444227585031 Functional Gain - FBLN7 ENSG00000144152 CDS Human protein_coding chr2:112922728 chr2:112922727 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_13517 0 0 0 0 1 FBLN7 chr2:112922748 5'GT 112922748 Upstream 22bp 12960 chr11 60635223 60635223 1 + G T UCEC 60635224 + 60635204 60635244 41 GCCAGACTCTCCGCTTCAAGGTGGTGGGTGAGTGCTGGCAG GCCAGACTCTCCGCTTCAATGTGGTGGGTGAGTGCTGGCAG < 41bp 0.500388247826645 0.800603168123269 NA NA prediction 0.600429840593249 Functional Gain - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60635224 chr11:60635223 nonsynonymous SNV 0.877 3 20 hm7G_associated_SNPs_13518 0 0 0 0 1 ZP1 chr11:60635230 5'GT 60635230 Upstream 8bp 12961 chr18 12427292 12427292 1 + G T UCEC 12427293 + 12427273 12427313 41 GTTATTTGGAAAGTTTAATGGCCAATACGATATCATCCAAT GTTATTTGGAAAGTTTAATTGCCAATACGATATCATCCAAT < 41bp 0.516024940883774 0.816220065557963 NA NA prediction 0.600390249348377 Functional Gain - PRELID3A ENSG00000141391 CDS Human protein_coding chr18:12427293 chr18:12427292 nonsynonymous SNV 0.977 1 20 hm7G_associated_SNPs_13519 0 0 1 0 2 PRELID3A chr18:12427220 3'AG 12427220 Downstream 73bp 12962 chr18 12427292 12427292 1 + G T UCEC 12427293 + 12427273 12427313 41 GTTATTTGGAAAGTTTAATGGCCAATACGATATCATCCAAT GTTATTTGGAAAGTTTAATTGCCAATACGATATCATCCAAT < 41bp 0.516024940883774 0.816220065557963 NA NA prediction 0.600390249348377 Functional Gain - PRELID3A ENSG00000141391 CDS Human protein_coding chr18:12427293 chr18:12427292 nonsynonymous SNV 0.977 1 20 hm7G_associated_SNPs_13519 0 0 1 0 2 PRELID3A chr18:12427322 5'GT 12427322 Upstream 31bp 12963 chr19 15648351 15648351 1 + G T LUAD 15648352 + 15648332 15648372 41 TCTTCTGGGCCCAGGGGATGGGCTGCTGCTCAGCAAAGGTG TCTTCTGGGCCCAGGGGATTGGCTGCTGCTCAGCAAAGGTG < 41bp 0.476427014210698 0.800167737320174 NA NA prediction 0.600335474640349 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15648352 chr19:15648351 nonsynonymous SNV 0.135 3 20 hm7G_associated_SNPs_13521 0 0 0 0 1 CYP4F22 chr19:15648346 3'AG 15648346 Downstream 6bp 12964 chr11 89885563 89885563 1 + G T LUAD 89885564 + 89885544 89885584 41 CAGCCATATCCCAAAGGATGGAATCTTCCTGGAACTGCAGC CAGCCATATCCCAAAGGATTGAATCTTCCTGGAACTGCAGC < 41bp 0.519074907758015 0.819221405192054 NA NA prediction 0.600292994868078 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89885564 chr11:89885563 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13522 0 0 1 0 2 NAALAD2 chr11:89885466 3'AG 89885466 Downstream 98bp 12965 chr11 89885563 89885563 1 + G T LUAD 89885564 + 89885544 89885584 41 CAGCCATATCCCAAAGGATGGAATCTTCCTGGAACTGCAGC CAGCCATATCCCAAAGGATTGAATCTTCCTGGAACTGCAGC < 41bp 0.519074907758015 0.819221405192054 NA NA prediction 0.600292994868078 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89885564 chr11:89885563 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13522 0 0 1 0 2 NAALAD2 chr11:89885652 5'GT 89885652 Upstream 90bp 12966 chrX 2947329 2947329 1 + G T LUAD 2947330 + 2947310 2947350 41 ATGCCCCTGCTGGAAGGAAGGGCGTCCCACTCCGACCACGA ATGCCCCTGCTGGAAGGAATGGCGTCCCACTCCGACCACGA < 41bp 0.529097660356096 0.829233637477304 NA NA prediction 0.600271954242417 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2947330 chrX:2947329 nonsynonymous SNV 0.342 1 20 hm7G_associated_SNPs_13523 0 0 0 0 1 ARSH chrX:2947409 5'GT 2947409 Upstream 81bp 12967 chr14 104570670 104570670 1 + G T UCEC 104570671 + 104570651 104570691 41 TCTTGCAGCCTCCCCTGAAGGGCGTGGTCATGGAGACCTTC TCTTGCAGCCTCCCCTGAATGGCGTGGTCATGGAGACCTTC < 41bp 0.541309198160179 0.84143825023147 NA NA prediction 0.600258104142581 Functional Gain - ASPG ENSG00000166183 CDS Human protein_coding chr14:104570671 chr14:104570670 nonsynonymous SNV 0.153 1 20 hm7G_associated_SNPs_13524 0 0 0 0 1 ASPG chr14:104570641 3'AG 104570641 Downstream 30bp 12968 chr19 18975033 18975033 1 + G T LUAD 18975034 + 18975014 18975054 41 CCGGGAGGCCATCATCCCAGGCTCCGTCTATGATCGGAGCA CCGGGAGGCCATCATCCCATGCTCCGTCTATGATCGGAGCA < 41bp 0.46154398848856 0.800110496444959 NA NA prediction 0.600220992889918 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18975034 chr19:18975033 nonsynonymous SNV 0.904 5 20 hm7G_associated_SNPs_13525 0 0 1 0 1 UPF1 chr19:18974979 3'AG 18974979 Downstream 55bp 12969 chr15 75111609 75111609 1 + G T LUAD 75111610 + 75111590 75111630 41 CAGCAGCCACCGGCACCCTGGCAGGTGAGGATCCCACTGGA CAGCAGCCACCGGCACCCTTGCAGGTGAGGATCCCACTGGA < 41bp 0.536625393720552 0.836734592917519 NA NA prediction 0.600218398393935 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75111610 chr15:75111609 synonymous SNV . 0 20 hm7G_associated_SNPs_13526 0 0 0 0 2 LMAN1L chr15:75111613 5'GT 75111613 Upstream 5bp 12970 chr15 75111609 75111609 1 + G T LUAD 75111610 + 75111590 75111630 41 CAGCAGCCACCGGCACCCTGGCAGGTGAGGATCCCACTGGA CAGCAGCCACCGGCACCCTTGCAGGTGAGGATCCCACTGGA < 41bp 0.536625393720552 0.836734592917519 NA NA prediction 0.600218398393935 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75111610 chr15:75111609 synonymous SNV . 0 20 hm7G_associated_SNPs_13526 0 0 0 0 2 LMAN1L chr15:75111633 5'GT 75111633 Upstream 25bp 12971 chr15 41866008 41866008 1 + G T UCEC 41866009 + 41865989 41866029 41 AGCCTCCGGAGTGTATGGAGGACGTGTGAGTATCCTGGGAA AGCCTCCGGAGTGTATGGATGACGTGTGAGTATCCTGGGAA < 41bp 0.515476448280772 0.815561707133596 NA NA prediction 0.600170517705648 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41866009 chr15:41866008 nonsynonymous SNV 0.854 2 20 hm7G_associated_SNPs_13527 0 0 1 0 1 TYRO3 chr15:41866013 5'GT 41866013 Upstream 6bp 12972 chr15 75942589 75942589 1 + G T COAD 75942590 + 75942570 75942610 41 ATCGCGTGGACACTTTCAAGGCCTTCAGTAAGAAGATGGAC ATCGCGTGGACACTTTCAATGCCTTCAGTAAGAAGATGGAC < 41bp 0.485945337876184 0.80007447746958 NA NA prediction 0.600148954939161 Functional Gain - SNX33 ENSG00000173548 CDS Human protein_coding chr15:75942590 chr15:75942589 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_13529 0 0 1 0 1 SNX33 chr15:75942649 5'GT 75942649 Upstream 61bp 12973 chr20 44640932 44640932 1 + G T LUSC 44640933 + 44640913 44640953 41 TTTGACAGCGACAAGAAGTGGGGCTTCTGCCCGGACCAAGG TTTGACAGCGACAAGAAGTTGGGCTTCTGCCCGGACCAAGG < 41bp 0.478691575751469 0.800059765626175 NA NA prediction 0.60011953125235 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640933 chr20:44640932 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13531 0 0 0 0 1 MMP9 chr20:44640952 5'GT 44640952 Upstream 21bp 12974 chr2 73115696 73115696 1 + G T OV 73115697 + 73115677 73115717 41 TGTTCCAGGTCCTGGCGCTGGAGGAACCTAATGTGAGGGTG TGTTCCAGGTCCTGGCGCTTGAGGAACCTAATGTGAGGGTG < 41bp 0.519480369228522 0.819535411034966 NA NA prediction 0.600110083612889 Functional Gain - SPR ENSG00000116096 CDS Human protein_coding chr2:73115697 chr2:73115696 synonymous SNV . 0 20 hm7G_associated_SNPs_13532 0 0 0 0 1 SPR chr2:73115733 5'GT 73115733 Upstream 38bp 12975 chr7 141800678 141800678 1 + G T LUAD 141800679 + 141800659 141800699 41 CTGGCTCTTCTGGGATGATGGGCAAAGCATTGGTGAGTAGA CTGGCTCTTCTGGGATGATTGGCAAAGCATTGGTGAGTAGA < 41bp 0.505263898024642 0.805310201554894 NA NA prediction 0.600092607060505 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141800679 chr7:141800678 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13533 0 0 1 0 2 MGAM chr7:141800602 3'AG 141800602 Downstream 77bp 12976 chr7 141800678 141800678 1 + G T LUAD 141800679 + 141800659 141800699 41 CTGGCTCTTCTGGGATGATGGGCAAAGCATTGGTGAGTAGA CTGGCTCTTCTGGGATGATTGGCAAAGCATTGGTGAGTAGA < 41bp 0.505263898024642 0.805310201554894 NA NA prediction 0.600092607060505 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141800679 chr7:141800678 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13533 0 0 1 0 2 MGAM chr7:141800690 5'GT 141800690 Upstream 13bp 12977 chr12 100904867 100904867 1 + G T UCEC 100904868 + 100904848 100904888 41 TGAGCTGTGTGTTGTTTGTGGAGACAGAGCCTCTGGATACC TGAGCTGTGTGTTGTTTGTTGAGACAGAGCCTCTGGATACC < 41bp 0.512534199735 0.812555163219677 NA NA prediction 0.600041926969354 Functional Gain - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904868 chr12:100904867 stopgain 0.998 1 20 hm7G_associated_SNPs_13536 0 0 1 0 1 NR1H4 chr12:100904921 5'GT 100904921 Upstream 55bp 12978 chr10 75556724 75556724 1 + G T HNSC 75556725 + 75556705 75556745 41 TCAACCAGGGAGTGTGGCAGGGGCTGGGCCAGGCCCCACTG TCAACCAGGGAGTGTGGCATGGGCTGGGCCAGGCCCCACTG < 41bp 0.537780969647326 0.837784140442719 NA NA prediction 0.600006341590786 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75556725 chr10:75556724 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13537 0 0 1 0 1 ZSWIM8 chr10:75556772 5'GT 75556772 Upstream 49bp 12979 chr12 124101060 124101060 1 + G T LGG 124101061 + 124101041 124101081 41 TTTTTCTCATTTCCTAGTGGGATTTTAGTGTGCACTGATGT TTTTTCTCATTTCCTAGTGTGATTTTAGTGTGCACTGATGT < 41bp 0.498781614366474 0.799992539553233 NA NA prediction 0.599985079106465 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124101061 chr12:124101060 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13538 0 0 1 0 2 DDX55 chr12:124101058 3'AG 124101058 Downstream 3bp 12980 chr12 124101060 124101060 1 + G T LGG 124101061 + 124101041 124101081 41 TTTTTCTCATTTCCTAGTGGGATTTTAGTGTGCACTGATGT TTTTTCTCATTTCCTAGTGTGATTTTAGTGTGCACTGATGT < 41bp 0.498781614366474 0.799992539553233 NA NA prediction 0.599985079106465 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124101061 chr12:124101060 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13538 0 0 1 0 2 DDX55 chr12:124101150 5'GT 124101150 Upstream 91bp 12981 chr9 34972451 34972451 1 + G T STAD 34972452 + 34972432 34972472 41 TGGCTGCCTGCGCCGCATGGGCTACATCCAAGGAGACAGTG TGGCTGCCTGCGCCGCATGTGCTACATCCAAGGAGACAGTG < 41bp 0.544333961073786 0.844324147595547 NA NA prediction 0.599980373043523 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34972452 chr9:34972451 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_13539 0 0 0 0 1 PHF24 chr9:34972528 5'GT 34972528 Upstream 78bp 12982 chr15 99901640 99901640 1 + G T LIHC 99901641 + 99901621 99901661 41 AGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCT AGGTGAAGGCCATAGGGACTGAGCATGATCACGTCCTCCCT < 41bp 0.521469860858094 0.821445442220368 NA NA prediction 0.599951162724549 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99901641 chr15:99901640 synonymous SNV . 0 20 hm7G_associated_SNPs_13540 0 0 1 0 2 LRRC28 chr15:99901541 3'AG 99901541 Downstream 100bp 12983 chr15 99901640 99901640 1 + G T LIHC 99901641 + 99901621 99901661 41 AGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCT AGGTGAAGGCCATAGGGACTGAGCATGATCACGTCCTCCCT < 41bp 0.521469860858094 0.821445442220368 NA NA prediction 0.599951162724549 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99901641 chr15:99901640 synonymous SNV . 0 20 hm7G_associated_SNPs_13540 0 0 1 0 2 LRRC28 chr15:99901716 5'GT 99901716 Upstream 77bp 12984 chr4 166226807 166226807 1 + G T COAD 166226808 + 166226788 166226828 41 CAAAGGCTATCCGGAGTGTGGAATGCTATGACTTTAAAGAA CAAAGGCTATCCGGAGTGTTGAATGCTATGACTTTAAAGAA < 41bp 0.516403951937243 0.816363532362598 NA NA prediction 0.599919160850709 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166226808 chr4:166226807 synonymous SNV . 0 20 hm7G_associated_SNPs_13541 0 0 1 0 2 KLHL2 chr4:166226760 3'AG 166226760 Downstream 48bp 12985 chr4 166226807 166226807 1 + G T COAD 166226808 + 166226788 166226828 41 CAAAGGCTATCCGGAGTGTGGAATGCTATGACTTTAAAGAA CAAAGGCTATCCGGAGTGTTGAATGCTATGACTTTAAAGAA < 41bp 0.516403951937243 0.816363532362598 NA NA prediction 0.599919160850709 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166226808 chr4:166226807 synonymous SNV . 0 20 hm7G_associated_SNPs_13541 0 0 1 0 2 KLHL2 chr4:166226877 5'GT 166226877 Upstream 71bp 12986 chr12 129373267 129373267 1 + G T LUSC 129373268 + 129373248 129373288 41 GGAAAAAAACACAGTCATGGGCAGAGTTCTTGAGGAAGCCA GGAAAAAAACACAGTCATGTGCAGAGTTCTTGAGGAAGCCA < 41bp 0.533631265797954 0.833567170523214 NA NA prediction 0.59987180945052 Functional Gain - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129373268 chr12:129373267 nonsynonymous SNV 0.142 4 20 hm7G_associated_SNPs_13542 0 0 0 0 2 GLT1D1 chr12:129373184 3'AG 129373184 Downstream 84bp 12987 chr12 129373267 129373267 1 + G T LUSC 129373268 + 129373248 129373288 41 GGAAAAAAACACAGTCATGGGCAGAGTTCTTGAGGAAGCCA GGAAAAAAACACAGTCATGTGCAGAGTTCTTGAGGAAGCCA < 41bp 0.533631265797954 0.833567170523214 NA NA prediction 0.59987180945052 Functional Gain - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129373268 chr12:129373267 nonsynonymous SNV 0.142 4 20 hm7G_associated_SNPs_13542 0 0 0 0 2 GLT1D1 chr12:129373289 5'GT 129373289 Upstream 23bp 12988 chr3 14693376 14693376 1 + G T STAD 14693377 + 14693357 14693397 41 AAAAGCCTTTGGACGTCACGGCCTCCTCGGTGAGTGAGGGT AAAAGCCTTTGGACGTCACTGCCTCCTCGGTGAGTGAGGGT < 41bp 0.512359657273294 0.812293817610397 NA NA prediction 0.599868320674206 Functional Gain - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14693377 chr3:14693376 synonymous SNV . 0 20 hm7G_associated_SNPs_13543 0 0 1 0 1 CCDC174 chr3:14693385 5'GT 14693385 Upstream 10bp 12989 chr1 185151152 185151152 1 + G T LUSC 185151153 + 185151133 185151173 41 CTGGAGAGTTAATGAGTATGGAAATTGACTTAGAAGATGAT CTGGAGAGTTAATGAGTATTGAAATTGACTTAGAAGATGAT < 41bp 0.504483128991465 0.804408138928974 NA NA prediction 0.599850019875019 Functional Gain - SWT1 ENSG00000116668 CDS Human protein_coding chr1:185151153 chr1:185151152 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_13544 0 0 1 0 2 SWT1 chr1:185151078 3'AG 185151078 Downstream 75bp 12990 chr1 185151152 185151152 1 + G T LUSC 185151153 + 185151133 185151173 41 CTGGAGAGTTAATGAGTATGGAAATTGACTTAGAAGATGAT CTGGAGAGTTAATGAGTATTGAAATTGACTTAGAAGATGAT < 41bp 0.504483128991465 0.804408138928974 NA NA prediction 0.599850019875019 Functional Gain - SWT1 ENSG00000116668 CDS Human protein_coding chr1:185151153 chr1:185151152 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_13544 0 0 1 0 2 SWT1 chr1:185151189 5'GT 185151189 Upstream 38bp 12991 chr7 129950820 129950820 1 + G T STAD 129950821 + 129950801 129950841 41 AAAAGGCCCCAGATGCCGAGGAACTCGTGAGTCACAGCTGC AAAAGGCCCCAGATGCCGATGAACTCGTGAGTCACAGCTGC < 41bp 0.479713132223393 0.799917132629682 NA NA prediction 0.599834265259365 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950821 chr7:129950820 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_13545 0 0 0 0 1 CPA4 chr7:129950826 5'GT 129950826 Upstream 7bp 12992 chr4 89317170 89317170 1 + G T LUAD 89317171 + 89317151 89317191 41 TTCCTTTGCTAAGCAGGACGGGAAAGTGTTCACATTTGGAG TTCCTTTGCTAAGCAGGACTGGAAAGTGTTCACATTTGGAG < 41bp 0.514013164032892 0.813917512096936 NA NA prediction 0.599808696128089 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89317171 chr4:89317170 nonsynonymous SNV 0.020 5 20 hm7G_associated_SNPs_13547 0 0 0 0 1 HERC6 chr4:89317167 3'AG 89317167 Downstream 4bp 12993 chr1 175048541 175048541 1 + G T LUAD 175048542 + 175048522 175048562 41 TGCCACTGCGAAGAGGGCAGGGAGGGCCCCGCCTGCGAGCG TGCCACTGCGAAGAGGGCATGGAGGGCCCCGCCTGCGAGCG < 41bp 0.52784408345087 0.827742273096114 NA NA prediction 0.599796379290487 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175048542 chr1:175048541 nonsynonymous SNV 0.911 2 20 hm7G_associated_SNPs_13548 0 0 0 0 1 TNN chr1:175048469 3'AG 175048469 Downstream 73bp 12994 chr8 42024796 42024796 1 + G T UCEC 42024797 + 42024777 42024817 41 CGATGGGGAAGACCATTGAGGGAGTGACTGTCACCAGCCAG CGATGGGGAAGACCATTGATGGAGTGACTGTCACCAGCCAG < 41bp 0.513150307104356 0.813008494655014 NA NA prediction 0.599716375101316 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42024797 chr8:42024796 nonsynonymous SNV 0.914 0 20 hm7G_associated_SNPs_13550 0 0 1 0 1 AP3M2 chr8:42024889 5'GT 42024889 Upstream 94bp 12995 chr5 112926833 112926833 1 + G T LGG 112926834 + 112926814 112926854 41 TTGAAATTTCTCAACAGAAGGGTATCTGGTCTACAACTCCT TTGAAATTTCTCAACAGAATGGTATCTGGTCTACAACTCCT < 41bp 0.499549518510268 0.799858049094151 NA NA prediction 0.599716098188302 Functional Gain - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112926834 chr5:112926833 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13551 0 0 1 0 1 YTHDC2 chr5:112926738 3'AG 112926738 Downstream 96bp 12996 chr11 61724426 61724426 1 + G T COAD 61724427 + 61724407 61724447 41 GTCAATGAAGGCGTGGCTTGGAGGTCGAATCCGGGACCCTA GTCAATGAAGGCGTGGCTTTGAGGTCGAATCCGGGACCCTA < 41bp 0.508293155464043 0.808145967038832 NA NA prediction 0.599705623149579 Functional Gain - BEST1 ENSG00000167995 CDS Human protein_coding chr11:61724427 chr11:61724426 stopgain 0.997 0 20 hm7G_associated_SNPs_13552 0 0 0 0 1 BEST1 chr11:61724470 5'GT 61724470 Upstream 45bp 12997 chr2 9463340 9463340 1 + G T SKCM 9463341 + 9463321 9463361 41 CGGAAATTGCCGAAGAGATGGAAAAGGAGAGGCGCTTCTTC CGGAAATTGCCGAAGAGATTGAAAAGGAGAGGCGCTTCTTC < 41bp 0.524184315453432 0.824034009632347 NA NA prediction 0.599699388357828 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9463341 chr2:9463340 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_13553 0 0 0 0 2 ASAP2 chr2:9463250 3'AG 9463250 Downstream 91bp 12998 chr2 9463340 9463340 1 + G T SKCM 9463341 + 9463321 9463361 41 CGGAAATTGCCGAAGAGATGGAAAAGGAGAGGCGCTTCTTC CGGAAATTGCCGAAGAGATTGAAAAGGAGAGGCGCTTCTTC < 41bp 0.524184315453432 0.824034009632347 NA NA prediction 0.599699388357828 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9463341 chr2:9463340 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_13553 0 0 0 0 2 ASAP2 chr2:9463379 5'GT 9463379 Upstream 40bp 12999 chr15 44673140 44673140 1 + G T rs140734894 44673141 + 44673121 44673161 41 TACTAAAGCAGGCTACCAAGGACAGAGTCAGTGATTTCCAT TACTAAAGCAGGCTACCAATGACAGAGTCAGTGATTTCCAT < 41bp 0.501089833280347 0.800937841262739 NA NA prediction 0.599696015964783 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44673141 chr15:44673140 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_13554 0 0 1 0 1 CASC4 chr15:44673174 5'GT 44673174 Upstream 35bp 13000 chr12 124103227 124103227 1 + G T UCEC 124103228 + 124103208 124103248 41 GTGTGTAGTGCCCCCTGCAGGAGATGAAGCCCCAGAGAAAC GTGTGTAGTGCCCCCTGCATGAGATGAAGCCCCAGAGAAAC < 41bp 0.482820026488277 0.799842665809369 NA NA prediction 0.599685331618738 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124103228 chr12:124103227 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_13555 0 0 1 0 1 DDX55 chr12:124103216 3'AG 124103216 Downstream 12bp 13001 chr1 55188406 55188406 1 + G T LGG 55188407 + 55188387 55188427 41 CCGTGAACTGGTGTGATGAGGGACTGCAAATAGATGCCAAA CCGTGAACTGGTGTGATGATGGACTGCAAATAGATGCCAAA < 41bp 0.47884097363106 0.799836476921937 NA NA prediction 0.599672953843874 Functional Gain - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55188407 chr1:55188406 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_13556 0 0 1 0 2 TTC4 chr1:55188348 3'AG 55188348 Downstream 59bp 13002 chr1 55188406 55188406 1 + G T LGG 55188407 + 55188387 55188427 41 CCGTGAACTGGTGTGATGAGGGACTGCAAATAGATGCCAAA CCGTGAACTGGTGTGATGATGGACTGCAAATAGATGCCAAA < 41bp 0.47884097363106 0.799836476921937 NA NA prediction 0.599672953843874 Functional Gain - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55188407 chr1:55188406 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_13556 0 0 1 0 2 TTC4 chr1:55188472 5'GT 55188472 Upstream 67bp 13003 chr19 7518363 7518363 1 + G T COAD 7518364 + 7518344 7518384 41 GTGTGGCAGCTGGCACTGAGGACTATGAAGACCTGACCCAG GTGTGGCAGCTGGCACTGATGACTATGAAGACCTGACCCAG < 41bp 0.475496606488437 0.79982806472098 NA NA prediction 0.59965612944196 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7518364 chr19:7518363 nonsynonymous SNV 0.945 0 20 hm7G_associated_SNPs_13557 0 0 0 0 1 ARHGEF18 chr19:7518353 3'AG 7518353 Downstream 11bp 13004 chr8 76456116 76456116 1 + G T LUAD 76456117 + 76456097 76456137 41 GTCTGTGTGCTATCTGTGGGGACAGAGCAACAGGAAAACAC GTCTGTGTGCTATCTGTGGTGACAGAGCAACAGGAAAACAC < 41bp 0.499606776707519 0.799824044185945 NA NA prediction 0.59964808837189 Functional Gain - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76456117 chr8:76456116 synonymous SNV . 0 20 hm7G_associated_SNPs_13558 0 0 0 0 2 HNF4G chr8:76456046 3'AG 76456046 Downstream 71bp 13005 chr8 76456116 76456116 1 + G T LUAD 76456117 + 76456097 76456137 41 GTCTGTGTGCTATCTGTGGGGACAGAGCAACAGGAAAACAC GTCTGTGTGCTATCTGTGGTGACAGAGCAACAGGAAAACAC < 41bp 0.499606776707519 0.799824044185945 NA NA prediction 0.59964808837189 Functional Gain - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76456117 chr8:76456116 synonymous SNV . 0 20 hm7G_associated_SNPs_13558 0 0 0 0 2 HNF4G chr8:76456214 5'GT 76456214 Upstream 99bp 13006 chr1 183516297 183516297 1 + G T READ 183516298 + 183516278 183516318 41 AGAGTCTGGCTGCCTTGGAGGAAGAGGAAGAGCTGATTTTT AGAGTCTGGCTGCCTTGGATGAAGAGGAAGAGCTGATTTTT < 41bp 0.506023263888053 0.805819117049717 NA NA prediction 0.599591706323327 Functional Gain - SMG7 ENSG00000116698 CDS Human protein_coding chr1:183516298 chr1:183516297 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13560 0 0 1 0 2 SMG7 chr1:183516238 3'AG 183516238 Downstream 60bp 13007 chr1 183516297 183516297 1 + G T READ 183516298 + 183516278 183516318 41 AGAGTCTGGCTGCCTTGGAGGAAGAGGAAGAGCTGATTTTT AGAGTCTGGCTGCCTTGGATGAAGAGGAAGAGCTGATTTTT < 41bp 0.506023263888053 0.805819117049717 NA NA prediction 0.599591706323327 Functional Gain - SMG7 ENSG00000116698 CDS Human protein_coding chr1:183516298 chr1:183516297 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13560 0 0 1 0 2 SMG7 chr1:183516387 5'GT 183516387 Upstream 91bp 13008 chr15 25223408 25223408 1 + G T COAD 25223409 + 25223389 25223429 41 TGGGCTTCCCCCTGCTCGAGGGACGCCAATAGGCATGCCGC TGGGCTTCCCCCTGCTCGATGGACGCCAATAGGCATGCCGC < 41bp 0.480991560414921 0.79977797361168 NA NA prediction 0.59955594722336 Functional Gain - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25223409 chr15:25223408 nonsynonymous SNV 0.305 3 20 hm7G_associated_SNPs_13561 0 0 1 0 2 SNRPN chr15:25223340 3'AG 25223340 Downstream 69bp 13009 chr15 25223408 25223408 1 + G T COAD 25223409 + 25223389 25223429 41 TGGGCTTCCCCCTGCTCGAGGGACGCCAATAGGCATGCCGC TGGGCTTCCCCCTGCTCGATGGACGCCAATAGGCATGCCGC < 41bp 0.480991560414921 0.79977797361168 NA NA prediction 0.59955594722336 Functional Gain - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25223409 chr15:25223408 nonsynonymous SNV 0.305 3 20 hm7G_associated_SNPs_13561 0 0 1 0 2 SNRPN chr15:25223465 5'GT 25223465 Upstream 58bp 13010 chr2 113950133 113950133 1 + G T LUSC 113950134 + 113950114 113950154 41 TATCGCCTGGAGGGCTTCCGGAAGTCTGAAGTGGCTGCCTA TATCGCCTGGAGGGCTTCCTGAAGTCTGAAGTGGCTGCCTA < 41bp 0.533926980596263 0.833701560947729 NA NA prediction 0.599549160702932 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950134 chr2:113950133 nonsynonymous SNV 0.418 2 20 hm7G_associated_SNPs_13562 0 0 1 0 1 PSD4 chr2:113950166 5'GT 113950166 Upstream 34bp 13011 chr10 135020785 135020785 1 + G T LUSC 135020786 + 135020766 135020806 41 CAACGTCAACAAGCACCCGGGCGGCCGGCAGAAGGCCCGCA CAACGTCAACAAGCACCCGTGCGGCCGGCAGAAGGCCCGCA < 41bp 0.469576520475687 0.799767805089415 NA NA prediction 0.59953561017883 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135020786 chr10:135020785 nonsynonymous SNV 0.887 0 20 hm7G_associated_SNPs_13564 0 0 0 0 1 KNDC1 chr10:135020855 5'GT 135020855 Upstream 71bp 13012 chr2 201757010 201757010 1 + G T UCEC 201757011 + 201756991 201757031 41 AAGGAGCGCCTGGTGATCCGGGCTCTGGAGAACAGAGTCGG AAGGAGCGCCTGGTGATCCTGGCTCTGGAGAACAGAGTCGG < 41bp 0.512359324943068 0.812120154249871 NA NA prediction 0.599521658613606 Functional Gain - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201757011 chr2:201757010 nonsynonymous SNV 0.786 0 20 hm7G_associated_SNPs_13565 0 0 1 0 1 NIF3L1 chr2:201757102 5'GT 201757102 Upstream 93bp 13013 chr2 172305280 172305280 1 + G T LIHC 172305281 + 172305261 172305301 41 TTCGTATATCAGCAACTACGGGAAAAATCCTTGAGAAAATA TTCGTATATCAGCAACTACTGGAAAAATCCTTGAGAAAATA < 41bp 0.502547700383836 0.80230379206114 NA NA prediction 0.599512183354609 Functional Gain - DCAF17 ENSG00000115827 CDS Human protein_coding chr2:172305281 chr2:172305280 synonymous SNV . 0 20 hm7G_associated_SNPs_13566 0 0 0 0 2 DCAF17 chr2:172305191 3'AG 172305191 Downstream 90bp 13014 chr2 172305280 172305280 1 + G T LIHC 172305281 + 172305261 172305301 41 TTCGTATATCAGCAACTACGGGAAAAATCCTTGAGAAAATA TTCGTATATCAGCAACTACTGGAAAAATCCTTGAGAAAATA < 41bp 0.502547700383836 0.80230379206114 NA NA prediction 0.599512183354609 Functional Gain - DCAF17 ENSG00000115827 CDS Human protein_coding chr2:172305281 chr2:172305280 synonymous SNV . 0 20 hm7G_associated_SNPs_13566 0 0 0 0 2 DCAF17 chr2:172305327 5'GT 172305327 Upstream 48bp 13015 chr11 73630023 73630023 1 + G T THYM 73630024 + 73630004 73630044 41 ACAAGTCATCCACAGATCAGGAGCACCAGTTCTATCCCTGC ACAAGTCATCCACAGATCATGAGCACCAGTTCTATCCCTGC < 41bp 0.489712241890541 0.799747494444797 NA NA prediction 0.599494988889593 Functional Gain - PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73630024 chr11:73630023 stopgain 1.000 1 20 hm7G_associated_SNPs_13567 0 0 1 0 2 PAAF1 chr11:73629995 3'AG 73629995 Downstream 29bp 13016 chr11 73630023 73630023 1 + G T THYM 73630024 + 73630004 73630044 41 ACAAGTCATCCACAGATCAGGAGCACCAGTTCTATCCCTGC ACAAGTCATCCACAGATCATGAGCACCAGTTCTATCCCTGC < 41bp 0.489712241890541 0.799747494444797 NA NA prediction 0.599494988889593 Functional Gain - PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73630024 chr11:73630023 stopgain 1.000 1 20 hm7G_associated_SNPs_13567 0 0 1 0 2 PAAF1 chr11:73630077 5'GT 73630077 Upstream 55bp 13017 chrX 155232672 155232672 1 + G T READ 155232673 + 155232653 155232693 41 CTTGGGAGTCTCTGTCACAGGGGAAGGACAAGGTGAGGGCT CTTGGGAGTCTCTGTCACATGGGAAGGACAAGGTGAGGGCT < 41bp 0.527106224558356 0.826839199727184 NA NA prediction 0.599465950337655 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232673 chrX:155232672 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_13568 0 0 0 0 1 IL9R chrX:155232684 5'GT 155232684 Upstream 13bp 13018 chr10 13160948 13160948 1 + G T UCEC 13160949 + 13160929 13160969 41 AGAATTACTTCGAACATGAGGAGTTAACTGTGAGCCAGCTC AGAATTACTTCGAACATGATGAGTTAACTGTGAGCCAGCTC < 41bp 0.531061973302218 0.830756450561671 NA NA prediction 0.599388954518908 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13160949 chr10:13160948 nonsynonymous SNV 0.827 4 20 hm7G_associated_SNPs_13572 0 0 0 0 3 OPTN chr10:13160888 3'AG 13160888 Downstream 61bp 13019 chr10 13160948 13160948 1 + G T UCEC 13160949 + 13160929 13160969 41 AGAATTACTTCGAACATGAGGAGTTAACTGTGAGCCAGCTC AGAATTACTTCGAACATGATGAGTTAACTGTGAGCCAGCTC < 41bp 0.531061973302218 0.830756450561671 NA NA prediction 0.599388954518908 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13160949 chr10:13160948 nonsynonymous SNV 0.827 4 20 hm7G_associated_SNPs_13572 0 0 0 0 3 OPTN chr10:13160906 3'AG 13160906 Downstream 43bp 13020 chr10 13160948 13160948 1 + G T UCEC 13160949 + 13160929 13160969 41 AGAATTACTTCGAACATGAGGAGTTAACTGTGAGCCAGCTC AGAATTACTTCGAACATGATGAGTTAACTGTGAGCCAGCTC < 41bp 0.531061973302218 0.830756450561671 NA NA prediction 0.599388954518908 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13160949 chr10:13160948 nonsynonymous SNV 0.827 4 20 hm7G_associated_SNPs_13572 0 0 0 0 3 OPTN chr10:13161040 5'GT 13161040 Upstream 93bp 13021 chr16 613339 613339 1 + G T UCEC 613340 + 613320 613360 41 GCGTGGGCACAGGGGCGAGGGCGCGGTCTCGGAAGCCCAAG GCGTGGGCACAGGGGCGAGTGCGCGGTCTCGGAAGCCCAAG < 41bp 0.479158839665759 0.79968766115515 NA NA prediction 0.5993753223103 Functional Gain - PRR35 ENSG00000161992 CDS Human protein_coding chr16:613340 chr16:613339 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_13573 0 0 0 0 1 PRR35 chr16:613256 3'AG 613256 Downstream 84bp 13022 chr19 40718729 40718729 1 + G T SARC 40718730 + 40718710 40718750 41 AGTGACTCCCGTGGACTGTGGTGGCAGCAGCAGTGGCAGCA AGTGACTCCCGTGGACTGTTGTGGCAGCAGCAGTGGCAGCA < 41bp 0.518547037535921 0.818228620185192 NA NA prediction 0.599363165298543 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718730 chr19:40718729 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_13574 0 0 0 0 1 MAP3K10 chr19:40718712 3'AG 40718712 Downstream 18bp 13023 chr15 80806735 80806735 1 + G T STAD 80806736 + 80806716 80806756 41 ACAGGATACATCAAGGCCTGGCCACCAGCAGGTAAGGAGAC ACAGGATACATCAAGGCCTTGCCACCAGCAGGTAAGGAGAC < 41bp 0.474318453890344 0.799669310271277 NA NA prediction 0.599338620542553 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80806736 chr15:80806735 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_13575 0 0 0 0 2 ARNT2 chr15:80806661 3'AG 80806661 Downstream 75bp 13024 chr15 80806735 80806735 1 + G T STAD 80806736 + 80806716 80806756 41 ACAGGATACATCAAGGCCTGGCCACCAGCAGGTAAGGAGAC ACAGGATACATCAAGGCCTTGCCACCAGCAGGTAAGGAGAC < 41bp 0.474318453890344 0.799669310271277 NA NA prediction 0.599338620542553 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80806736 chr15:80806735 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_13575 0 0 0 0 2 ARNT2 chr15:80806746 5'GT 80806746 Upstream 12bp 13025 chr16 844177 844177 1 + G T THCA 844178 + 844158 844198 41 TGCATGCCGCTGCCTCTGCGGGCGAGCACGAGAAGGTGGTC TGCATGCCGCTGCCTCTGCTGGCGAGCACGAGAAGGTGGTC < 41bp 0.470065737156095 0.799660043160381 NA NA prediction 0.599320086320763 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:844178 chr16:844177 synonymous SNV . 0 20 hm7G_associated_SNPs_13576 0 0 1 0 1 CHTF18 chr16:844201 5'GT 844201 Upstream 25bp 13026 chr19 34983977 34983977 1 + G T LUAD 34983978 + 34983958 34983998 41 GAAGGCGTTCTACAACGTGGGTGAGAAAGTGTACTGCCAGG GAAGGCGTTCTACAACGTGTGTGAGAAAGTGTACTGCCAGG < 41bp 0.489279468873809 0.799648533700429 NA NA prediction 0.599297067400858 Functional Gain - WTIP ENSG00000142279 CDS Human protein_coding chr19:34983978 chr19:34983977 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13580 0 0 1 0 2 WTIP chr19:34983942 3'AG 34983942 Downstream 36bp 13027 chr19 34983977 34983977 1 + G T LUAD 34983978 + 34983958 34983998 41 GAAGGCGTTCTACAACGTGGGTGAGAAAGTGTACTGCCAGG GAAGGCGTTCTACAACGTGTGTGAGAAAGTGTACTGCCAGG < 41bp 0.489279468873809 0.799648533700429 NA NA prediction 0.599297067400858 Functional Gain - WTIP ENSG00000142279 CDS Human protein_coding chr19:34983978 chr19:34983977 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13580 0 0 1 0 2 WTIP chr19:34984009 5'GT 34984009 Upstream 33bp 13028 chr19 42818986 42818986 1 + G T COAD 42818987 + 42818967 42819007 41 CTACCTGAGCTGCTCCAGTGGCCGCAGCTTCCGCTCAGTGC CTACCTGAGCTGCTCCAGTTGCCGCAGCTTCCGCTCAGTGC < 41bp 0.539906662058108 0.839549371767885 NA NA prediction 0.599285419419554 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42818987 chr19:42818986 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13581 0 0 1 0 2 TMEM145 chr19:42818944 3'AG 42818944 Downstream 43bp 13029 chr19 42818986 42818986 1 + G T COAD 42818987 + 42818967 42819007 41 CTACCTGAGCTGCTCCAGTGGCCGCAGCTTCCGCTCAGTGC CTACCTGAGCTGCTCCAGTTGCCGCAGCTTCCGCTCAGTGC < 41bp 0.539906662058108 0.839549371767885 NA NA prediction 0.599285419419554 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42818987 chr19:42818986 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13581 0 0 1 0 2 TMEM145 chr19:42819003 5'GT 42819003 Upstream 18bp 13030 chr2 88484879 88484879 1 + G T LUSC 88484880 + 88484860 88484900 41 TGACATCCGTGTCAGTGTCGGATGAAGCCATCACCCAGACC TGACATCCGTGTCAGTGTCTGATGAAGCCATCACCCAGACC < 41bp 0.490263983868387 0.799641712194228 NA NA prediction 0.599283424388455 Functional Gain - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88484880 chr2:88484879 synonymous SNV . 0 20 hm7G_associated_SNPs_13582 0 0 0 0 1 THNSL2 chr2:88484847 3'AG 88484847 Downstream 33bp 13031 chr1 170135699 170135699 1 + G T rs535550660 170135700 + 170135680 170135720 41 GCGGCTCCGGGATAGGAAGGGTCAGCAAACACGTCTTATTG GCGGCTCCGGGATAGGAAGTGTCAGCAAACACGTCTTATTG < 41bp 0.502129885804091 0.801751254349904 NA NA prediction 0.599242737091626 Functional Gain - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170135700 chr1:170135699 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13584 0 0 0 0 1 METTL11B chr1:170135643 3'AG 170135643 Downstream 57bp 13032 chrX 130220557 130220557 1 + G T COAD 130220558 + 130220538 130220578 41 CACGCATAAAGATGGAAGAGGATGCACTACTTTCTGATCCA CACGCATAAAGATGGAAGATGATGCACTACTTTCTGATCCA < 41bp 0.4888466542374 0.799617131899304 NA NA prediction 0.599234263798607 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220558 chrX:130220557 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13585 0 0 0 0 2 ARHGAP36 chrX:130220533 3'AG 130220533 Downstream 25bp 13033 chrX 130220557 130220557 1 + G T COAD 130220558 + 130220538 130220578 41 CACGCATAAAGATGGAAGAGGATGCACTACTTTCTGATCCA CACGCATAAAGATGGAAGATGATGCACTACTTTCTGATCCA < 41bp 0.4888466542374 0.799617131899304 NA NA prediction 0.599234263798607 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220558 chrX:130220557 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13585 0 0 0 0 2 ARHGAP36 chrX:130220639 5'GT 130220639 Upstream 83bp 13034 chr14 74340877 74340877 1 + G T LUSC 74340878 + 74340858 74340898 41 ACTTCTTTCTATTGGCCCTGGCAAACCAAGGTTATTCTGGA ACTTCTTTCTATTGGCCCTTGCAAACCAAGGTTATTCTGGA < 41bp 0.51799901806877 0.817615912976887 NA NA prediction 0.599233789816235 Functional Gain - PTGR2 ENSG00000140043;ENSG00000258653 CDS Human other chr14:74340878 chr14:74340877 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13586 0 0 1 0 1 PTGR2 chr14:74340917 5'GT 74340917 Upstream 41bp 13035 chr12 52308264 52308264 1 + G T SARC 52308265 + 52308245 52308285 41 GTGGCGGGGCTTGTGGCACGGTGAGAGTGTGGCCGTCAAGA GTGGCGGGGCTTGTGGCACTGTGAGAGTGTGGCCGTCAAGA < 41bp 0.528436226006322 0.828036198116504 NA NA prediction 0.599199944220366 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52308265 chr12:52308264 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_13587 0 0 0 0 1 ACVRL1 chr12:52308223 3'AG 52308223 Downstream 42bp 13036 chr17 4645286 4645286 1 + G T READ 4645287 + 4645267 4645307 41 GACATGGGGTCCCCGGCCAGGCTTCACCTTTGCTTCCCTTC GACATGGGGTCCCCGGCCATGCTTCACCTTTGCTTCCCTTC < 41bp 0.467105876948496 0.799576277506926 NA NA prediction 0.599152555013852 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4645287 chr17:4645286 nonsynonymous SNV 0.953 3 20 hm7G_associated_SNPs_13589 0 0 0 0 2 ZMYND15 chr17:4645210 3'AG 4645210 Downstream 77bp 13037 chr17 4645286 4645286 1 + G T READ 4645287 + 4645267 4645307 41 GACATGGGGTCCCCGGCCAGGCTTCACCTTTGCTTCCCTTC GACATGGGGTCCCCGGCCATGCTTCACCTTTGCTTCCCTTC < 41bp 0.467105876948496 0.799576277506926 NA NA prediction 0.599152555013852 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4645287 chr17:4645286 nonsynonymous SNV 0.953 3 20 hm7G_associated_SNPs_13589 0 0 0 0 2 ZMYND15 chr17:4645365 5'GT 4645365 Upstream 80bp 13038 chr7 102113378 102113378 1 + G T CESC 102113379 + 102113359 102113399 41 CTGAAGTGGCCCCAGCCCTGGGCCCTTGGCCAGGTGGTGAC CTGAAGTGGCCCCAGCCCTTGGCCCTTGGCCAGGTGGTGAC < 41bp 0.525866770044907 0.825441705812111 NA NA prediction 0.599149871534408 Functional Gain - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102113379 chr7:102113378 nonsynonymous SNV 0.155 0 20 hm7G_associated_SNPs_13590 0 0 1 0 1 LRWD1 chr7:102113356 3'AG 102113356 Downstream 23bp 13039 chr19 50951495 50951495 1 + G T UCEC 50951496 + 50951476 50951516 41 GACCAGAGAAACAGCTGGAGGTCCTGCAGGACATCGCGGAT GACCAGAGAAACAGCTGGATGTCCTGCAGGACATCGCGGAT < 41bp 0.523069726462989 0.822606756987185 NA NA prediction 0.599074061048392 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50951496 chr19:50951495 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13592 0 0 0 0 1 MYBPC2 chr19:50951482 3'AG 50951482 Downstream 14bp 13040 chr14 105395231 105395231 1 + G T UCEC 105395232 + 105395212 105395252 41 ATACTACTGGTCCCTCACAGGGCCTGACATCGGGGTCAACG ATACTACTGGTCCCTCACATGGCCTGACATCGGGGTCAACG < 41bp 0.540647444065403 0.840135304357958 NA NA prediction 0.598975720585108 Functional Gain - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105395232 chr14:105395231 nonsynonymous SNV 0.173 4 20 hm7G_associated_SNPs_13595 0 0 0 0 1 PLD4 chr14:105395269 5'GT 105395269 Upstream 39bp 13041 chr1 248028138 248028138 1 + G T LUSC 248028139 + 248028119 248028159 41 CGACGCTGCAGAGACTGCGGGAGAGCAAGAGCCGGCTGGTC CGACGCTGCAGAGACTGCGTGAGAGCAAGAGCCGGCTGGTC < 41bp 0.523183900434435 0.822671432746508 NA NA prediction 0.598975064624147 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248028139 chr1:248028138 synonymous SNV . 0 20 hm7G_associated_SNPs_13596 0 0 1 0 1 TRIM58 chr1:248028237 5'GT 248028237 Upstream 100bp 13042 chr8 145616354 145616354 1 + G T UCEC 145616355 + 145616335 145616375 41 TGGATGAGTTGTTCCTTGAGGACTTCCAGGCCCTCCCCCAC TGGATGAGTTGTTCCTTGATGACTTCCAGGCCCTCCCCCAC < 41bp 0.473991360676728 0.799460282443687 NA NA prediction 0.598920564887374 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145616355 chr8:145616354 nonsynonymous SNV 0.773 1 20 hm7G_associated_SNPs_13598 0 0 0 0 1 ADCK5 chr8:145616334 3'AG 145616334 Downstream 21bp 13043 chr18 77221350 77221350 1 + G T LUSC 77221351 + 77221331 77221371 41 ATGGAAGCGAAAACTGACCGGGACCTGTGCAAGCCGGTGAG ATGGAAGCGAAAACTGACCTGGACCTGTGCAAGCCGGTGAG < 41bp 0.533365986056907 0.832822129172801 NA NA prediction 0.598912286231787 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77221351 chr18:77221350 nonsynonymous SNV 0.046 1 20 hm7G_associated_SNPs_13600 0 0 0 0 2 NFATC1 chr18:77221311 3'AG 77221311 Downstream 40bp 13044 chr18 77221350 77221350 1 + G T LUSC 77221351 + 77221331 77221371 41 ATGGAAGCGAAAACTGACCGGGACCTGTGCAAGCCGGTGAG ATGGAAGCGAAAACTGACCTGGACCTGTGCAAGCCGGTGAG < 41bp 0.533365986056907 0.832822129172801 NA NA prediction 0.598912286231787 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77221351 chr18:77221350 nonsynonymous SNV 0.046 1 20 hm7G_associated_SNPs_13600 0 0 0 0 2 NFATC1 chr18:77221366 5'GT 77221366 Upstream 17bp 13045 chr18 52262267 52262267 1 + G T LUSC 52262268 + 52262248 52262288 41 GTCTCTCCCAACTTAACTGGGGTCTGCGTGAACCCAGGAAT GTCTCTCCCAACTTAACTGTGGTCTGCGTGAACCCAGGAAT < 41bp 0.511027133732078 0.810474553421167 NA NA prediction 0.598894839378177 Functional Gain - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52262268 chr18:52262267 nonsynonymous SNV 0.476 3 20 hm7G_associated_SNPs_13601 0 0 0 0 2 DYNAP chr18:52262170 3'AG 52262170 Downstream 98bp 13046 chr18 52262267 52262267 1 + G T LUSC 52262268 + 52262248 52262288 41 GTCTCTCCCAACTTAACTGGGGTCTGCGTGAACCCAGGAAT GTCTCTCCCAACTTAACTGTGGTCTGCGTGAACCCAGGAAT < 41bp 0.511027133732078 0.810474553421167 NA NA prediction 0.598894839378177 Functional Gain - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52262268 chr18:52262267 nonsynonymous SNV 0.476 3 20 hm7G_associated_SNPs_13601 0 0 0 0 2 DYNAP chr18:52262334 5'GT 52262334 Upstream 68bp 13047 chr2 234067008 234067008 1 + G T SARC 234067009 + 234066989 234067029 41 TGAATAAGTTGGTGATCTTGGTGGAAACAGAGAAGGAGAAG TGAATAAGTTGGTGATCTTTGTGGAAACAGAGAAGGAGAAG < 41bp 0.497596302936796 0.799432184859773 NA NA prediction 0.598864369719545 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234067009 chr2:234067008 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_13602 0 0 1 0 2 INPP5D chr2:234066959 3'AG 234066959 Downstream 50bp 13048 chr2 234067008 234067008 1 + G T SARC 234067009 + 234066989 234067029 41 TGAATAAGTTGGTGATCTTGGTGGAAACAGAGAAGGAGAAG TGAATAAGTTGGTGATCTTTGTGGAAACAGAGAAGGAGAAG < 41bp 0.497596302936796 0.799432184859773 NA NA prediction 0.598864369719545 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234067009 chr2:234067008 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_13602 0 0 1 0 2 INPP5D chr2:234067065 5'GT 234067065 Upstream 58bp 13049 chr1 45226293 45226293 1 + G T UCEC 45226294 + 45226274 45226314 41 GGGCCCTGGGACAGAACAAGGCTCACACCCCGTTCCGTGAG GGGCCCTGGGACAGAACAATGCTCACACCCCGTTCCGTGAG < 41bp 0.530470475112069 0.829900754365565 NA NA prediction 0.598860558506993 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45226294 chr1:45226293 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13603 0 0 1 0 2 KIF2C chr1:45226264 3'AG 45226264 Downstream 30bp 13050 chr1 45226293 45226293 1 + G T UCEC 45226294 + 45226274 45226314 41 GGGCCCTGGGACAGAACAAGGCTCACACCCCGTTCCGTGAG GGGCCCTGGGACAGAACAATGCTCACACCCCGTTCCGTGAG < 41bp 0.530470475112069 0.829900754365565 NA NA prediction 0.598860558506993 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45226294 chr1:45226293 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13603 0 0 1 0 2 KIF2C chr1:45226374 5'GT 45226374 Upstream 82bp 13051 chr20 25193907 25193907 1 + G T THCA 25193908 + 25193888 25193928 41 CACGTTCACAGAGCGCTCAGGGAATCCGGGAACTACTGGAT CACGTTCACAGAGCGCTCATGGAATCCGGGAACTACTGGAT < 41bp 0.499462191277806 0.799429791215387 NA NA prediction 0.598859582430775 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25193908 chr20:25193907 nonsynonymous SNV 0.078 1 20 hm7G_associated_SNPs_13604 0 0 1 0 1 ENTPD6 chr20:25193899 3'AG 25193899 Downstream 9bp 13052 chr12 124212355 124212355 1 + G T UCEC 124212356 + 124212336 124212376 41 GTCTGGCCTAATTAACCAAGGAAAAGTGGAAGCATTTGAAA GTCTGGCCTAATTAACCAATGAAAAGTGGAAGCATTTGAAA < 41bp 0.514714112639465 0.814139097443579 NA NA prediction 0.598849969608227 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124212356 chr12:124212355 stopgain 1.000 1 20 hm7G_associated_SNPs_13605 0 0 1 0 1 ATP6V0A2 chr12:124212330 3'AG 124212330 Downstream 26bp 13053 chr9 71998586 71998586 1 + G T OV 71998587 + 71998567 71998607 41 TCCCCTGCCACACATCTACGGAGCTCGAATCAAAGGTGTGG TCCCCTGCCACACATCTACTGAGCTCGAATCAAAGGTGTGG < 41bp 0.530259140701209 0.829668121842687 NA NA prediction 0.598817962282956 Functional Gain - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:71998587 chr9:71998586 stopgain 0.979 1 20 hm7G_associated_SNPs_13608 0 0 0 0 2 FAM189A2 chr9:71998546 3'AG 71998546 Downstream 41bp 13054 chr9 71998586 71998586 1 + G T OV 71998587 + 71998567 71998607 41 TCCCCTGCCACACATCTACGGAGCTCGAATCAAAGGTGTGG TCCCCTGCCACACATCTACTGAGCTCGAATCAAAGGTGTGG < 41bp 0.530259140701209 0.829668121842687 NA NA prediction 0.598817962282956 Functional Gain - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:71998587 chr9:71998586 stopgain 0.979 1 20 hm7G_associated_SNPs_13608 0 0 0 0 2 FAM189A2 chr9:71998675 5'GT 71998675 Upstream 90bp 13055 chr5 98128875 98128875 1 + G T SARC 98128876 + 98128856 98128896 41 ACCTGCCGGCCGCCTTTGTGGATGGCACCACCAGTGGTGGG ACCTGCCGGCCGCCTTTGTTGATGGCACCACCAGTGGTGGG < 41bp 0.5076653788828 0.807067423774126 NA NA prediction 0.598804089782651 Functional Gain - RGMB ENSG00000174136 CDS Human protein_coding chr5:98128876 chr5:98128875 synonymous SNV 0.992 0 20 hm7G_associated_SNPs_13609 0 0 1 0 1 RGMB chr5:98128789 3'AG 98128789 Downstream 87bp 13056 chr16 69820937 69820937 1 + G T LIHC 69820938 + 69820918 69820958 41 CATCTGCCAGCTCTAGCCGGGCAGGAGTGGCCCTGCCTTTT CATCTGCCAGCTCTAGCCGTGCAGGAGTGGCCCTGCCTTTT < 41bp 0.528433212975253 0.827823405710059 NA NA prediction 0.598780385469611 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69820938 chr16:69820937 synonymous SNV . 0 20 hm7G_associated_SNPs_13610 0 0 1 0 2 WWP2 chr16:69820899 3'AG 69820899 Downstream 39bp 13057 chr16 69820937 69820937 1 + G T LIHC 69820938 + 69820918 69820958 41 CATCTGCCAGCTCTAGCCGGGCAGGAGTGGCCCTGCCTTTT CATCTGCCAGCTCTAGCCGTGCAGGAGTGGCCCTGCCTTTT < 41bp 0.528433212975253 0.827823405710059 NA NA prediction 0.598780385469611 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69820938 chr16:69820937 synonymous SNV . 0 20 hm7G_associated_SNPs_13610 0 0 1 0 2 WWP2 chr16:69820983 5'GT 69820983 Upstream 47bp 13058 chr5 153674418 153674418 1 + G T COAD 153674419 + 153674399 153674439 41 AACGTTTTTCTTGGGAGATGGGCAGAAGCTGAAGGACTGGC AACGTTTTTCTTGGGAGATTGGCAGAAGCTGAAGGACTGGC < 41bp 0.487361853501358 0.799368526831845 NA NA prediction 0.59873705366369 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153674419 chr5:153674418 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_13611 0 0 1 0 2 GALNT10 chr5:153674376 3'AG 153674376 Downstream 43bp 13059 chr5 153674418 153674418 1 + G T COAD 153674419 + 153674399 153674439 41 AACGTTTTTCTTGGGAGATGGGCAGAAGCTGAAGGACTGGC AACGTTTTTCTTGGGAGATTGGCAGAAGCTGAAGGACTGGC < 41bp 0.487361853501358 0.799368526831845 NA NA prediction 0.59873705366369 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153674419 chr5:153674418 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_13611 0 0 1 0 2 GALNT10 chr5:153674478 5'GT 153674478 Upstream 61bp 13060 chr6 150267743 150267743 1 + G T UCEC 150267744 + 150267724 150267764 41 ACTGTATAGGATGGCTTGAGGACTTCTTGATGGGCATGGAC ACTGTATAGGATGGCTTGATGACTTCTTGATGGGCATGGAC < 41bp 0.497647251006082 0.799336840414901 NA NA prediction 0.598673680829803 Functional Gain - ULBP2 ENSG00000131015 CDS Human protein_coding chr6:150267744 chr6:150267743 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_13615 0 0 0 0 1 ULBP2 chr6:150267789 5'GT 150267789 Upstream 47bp 13061 chr17 16329538 16329538 1 + G T UCEC 16329539 + 16329519 16329559 41 CTTCTGTGGACAGCTGTGAGGAGAACTCAGTGCTGGAGATC CTTCTGTGGACAGCTGTGATGAGAACTCAGTGCTGGAGATC < 41bp 0.538354511166779 0.837691237851925 NA NA prediction 0.598673453370292 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16329539 chr17:16329538 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_13616 0 0 0 0 1 TRPV2 chr17:16329583 5'GT 16329583 Upstream 46bp 13062 chr15 76463404 76463404 1 + G T UCEC 76463405 + 76463385 76463425 41 ACTGTGGCCAATGGACCCAGGAGCCCCTGGGACGCCATCAG ACTGTGGCCAATGGACCCATGAGCCCCTGGGACGCCATCAG < 41bp 0.544864931752104 0.844199125659114 NA NA prediction 0.598668387814019 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76463405 chr15:76463404 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13617 0 0 0 0 2 TMEM266 chr15:76463334 3'AG 76463334 Downstream 71bp 13063 chr15 76463404 76463404 1 + G T UCEC 76463405 + 76463385 76463425 41 ACTGTGGCCAATGGACCCAGGAGCCCCTGGGACGCCATCAG ACTGTGGCCAATGGACCCATGAGCCCCTGGGACGCCATCAG < 41bp 0.544864931752104 0.844199125659114 NA NA prediction 0.598668387814019 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76463405 chr15:76463404 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13617 0 0 0 0 2 TMEM266 chr15:76463472 5'GT 76463472 Upstream 69bp 13064 chr16 3168975 3168975 1 + G T BLCA 3168976 + 3168956 3168996 41 GAGGCCTCGGGCTCCAGCCGGCAGGCAGGAGATGAGAAGGA GAGGCCTCGGGCTCCAGCCTGCAGGCAGGAGATGAGAAGGA < 41bp 0.517203773855421 0.816528229492006 NA NA prediction 0.59864891127317 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3168976 chr16:3168975 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_13618 0 0 1 0 2 ZNF205 chr16:3168906 3'AG 3168906 Downstream 70bp 13065 chr16 3168975 3168975 1 + G T BLCA 3168976 + 3168956 3168996 41 GAGGCCTCGGGCTCCAGCCGGCAGGCAGGAGATGAGAAGGA GAGGCCTCGGGCTCCAGCCTGCAGGCAGGAGATGAGAAGGA < 41bp 0.517203773855421 0.816528229492006 NA NA prediction 0.59864891127317 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3168976 chr16:3168975 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_13618 0 0 1 0 2 ZNF205 chr16:3169016 5'GT 3169016 Upstream 42bp 13066 chr1 1848491 1848491 1 + G T UCEC 1848492 + 1848472 1848512 41 AGGAGGCCGACAAGGATGGGGACAGGACCATCGACTATGAG AGGAGGCCGACAAGGATGGTGACAGGACCATCGACTATGAG < 41bp 0.513549339659589 0.812856170920317 NA NA prediction 0.598613662521455 Functional Gain - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848492 chr1:1848491 synonymous SNV . 0 20 hm7G_associated_SNPs_13619 0 0 0 0 2 CALML6 chr1:1848413 3'AG 1848413 Downstream 79bp 13067 chr1 1848491 1848491 1 + G T UCEC 1848492 + 1848472 1848512 41 AGGAGGCCGACAAGGATGGGGACAGGACCATCGACTATGAG AGGAGGCCGACAAGGATGGTGACAGGACCATCGACTATGAG < 41bp 0.513549339659589 0.812856170920317 NA NA prediction 0.598613662521455 Functional Gain - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848492 chr1:1848491 synonymous SNV . 0 20 hm7G_associated_SNPs_13619 0 0 0 0 2 CALML6 chr1:1848586 5'GT 1848586 Upstream 96bp 13068 chr10 131959237 131959237 1 + G T UCEC 131959238 + 131959218 131959258 41 CTGCATGCTGTTTATGAAAGGAACTCCTCAAGAACCACGCT CTGCATGCTGTTTATGAAATGAACTCCTCAAGAACCACGCT < 41bp 0.5047388699192 0.804016284271726 NA NA prediction 0.598554828705052 Functional Gain - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131959238 chr10:131959237 stopgain 0.991 1 20 hm7G_associated_SNPs_13621 0 0 1 0 1 GLRX3 chr10:131959261 5'GT 131959261 Upstream 25bp 13069 chr10 129861389 129861389 1 + G T LUSC 129861390 + 129861370 129861410 41 GACTTCTGGAGAATGGTCTGGGAGCAAAAGTCTGCGACCAT GACTTCTGGAGAATGGTCTTGGAGCAAAAGTCTGCGACCAT < 41bp 0.524254406215721 0.823522247196688 NA NA prediction 0.598535681961933 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129861390 chr10:129861389 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13622 0 0 0 1 2 PTPRE chr10:129861347 3'AG 129861347 Downstream 43bp 13070 chr10 129861389 129861389 1 + G T LUSC 129861390 + 129861370 129861410 41 GACTTCTGGAGAATGGTCTGGGAGCAAAAGTCTGCGACCAT GACTTCTGGAGAATGGTCTTGGAGCAAAAGTCTGCGACCAT < 41bp 0.524254406215721 0.823522247196688 NA NA prediction 0.598535681961933 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129861390 chr10:129861389 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13622 0 0 0 1 2 PTPRE chr10:129861444 5'GT 129861444 Upstream 56bp 13071 chr10 93753531 93753531 1 + G T LUSC 93753532 + 93753512 93753552 41 AGCATTTTGGTGGTGAAATGGCAGTGAAGTTGCCACATCTC AGCATTTTGGTGGTGAAATTGCAGTGAAGTTGCCACATCTC < 41bp 0.509836697496249 0.809096386852667 NA NA prediction 0.598519378712836 Functional Gain - BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93753532 chr10:93753531 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_13623 0 0 1 0 2 BTAF1 chr10:93753451 3'AG 93753451 Downstream 81bp 13072 chr10 93753531 93753531 1 + G T LUSC 93753532 + 93753512 93753552 41 AGCATTTTGGTGGTGAAATGGCAGTGAAGTTGCCACATCTC AGCATTTTGGTGGTGAAATTGCAGTGAAGTTGCCACATCTC < 41bp 0.509836697496249 0.809096386852667 NA NA prediction 0.598519378712836 Functional Gain - BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93753532 chr10:93753531 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_13623 0 0 1 0 2 BTAF1 chr10:93753604 5'GT 93753604 Upstream 74bp 13073 chr5 76251649 76251649 1 + G T UCEC 76251650 + 76251630 76251670 41 AGTCCATGAACCAGGAAATGGATTCACATTAACCATAAAGA AGTCCATGAACCAGGAAATTGATTCACATTAACCATAAAGA < 41bp 0.518279798494046 0.817532109140966 NA NA prediction 0.598504621293839 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76251650 chr5:76251649 stopgain 0.999 1 20 hm7G_associated_SNPs_13624 0 0 0 0 1 CRHBP chr5:76251688 5'GT 76251688 Upstream 40bp 13074 chrX 128879233 128879233 1 + G T LGG 128879234 + 128879214 128879254 41 GTGGATTACAGGCTTTACAGGGTCTGCAGGTGACAATCATT GTGGATTACAGGCTTTACATGGTCTGCAGGTGACAATCATT < 41bp 0.539141009022086 0.838363654257381 NA NA prediction 0.598445290470589 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128879234 chrX:128879233 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13625 0 0 0 0 2 XPNPEP2 chrX:128879179 3'AG 128879179 Downstream 55bp 13075 chrX 128879233 128879233 1 + G T LGG 128879234 + 128879214 128879254 41 GTGGATTACAGGCTTTACAGGGTCTGCAGGTGACAATCATT GTGGATTACAGGCTTTACATGGTCTGCAGGTGACAATCATT < 41bp 0.539141009022086 0.838363654257381 NA NA prediction 0.598445290470589 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128879234 chrX:128879233 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13625 0 0 0 0 2 XPNPEP2 chrX:128879242 5'GT 128879242 Upstream 10bp 13076 chr11 111592624 111592624 1 + G T UCEC 111592625 + 111592605 111592645 41 CATCCCCAGCTGTCCCCACGGCAGAGCCTGGAGACCCAGTA CATCCCCAGCTGTCCCCACTGCAGAGCCTGGAGACCCAGTA < 41bp 0.542734526035942 0.841939924427576 NA NA prediction 0.598410796783267 Functional Gain - SIK2 ENSG00000170145 CDS Human protein_coding chr11:111592625 chr11:111592624 nonsynonymous SNV 0.457 2 20 hm7G_associated_SNPs_13626 0 0 1 0 2 SIK2 chr11:111592554 3'AG 111592554 Downstream 71bp 13077 chr11 111592624 111592624 1 + G T UCEC 111592625 + 111592605 111592645 41 CATCCCCAGCTGTCCCCACGGCAGAGCCTGGAGACCCAGTA CATCCCCAGCTGTCCCCACTGCAGAGCCTGGAGACCCAGTA < 41bp 0.542734526035942 0.841939924427576 NA NA prediction 0.598410796783267 Functional Gain - SIK2 ENSG00000170145 CDS Human protein_coding chr11:111592625 chr11:111592624 nonsynonymous SNV 0.457 2 20 hm7G_associated_SNPs_13626 0 0 1 0 2 SIK2 chr11:111592664 5'GT 111592664 Upstream 41bp 13078 chr13 25889563 25889563 1 + G T UCEC 25889564 + 25889544 25889584 41 TTCAACTGCAGGCAATGAAGGCCTTGGTGGTATAGATTTCA TTCAACTGCAGGCAATGAATGCCTTGGTGGTATAGATTTCA < 41bp 0.496691654665059 0.799202002869229 NA NA prediction 0.598404005738457 Functional Gain - NUP58 ENSG00000139496 CDS Human protein_coding chr13:25889564 chr13:25889563 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13627 0 0 1 0 1 NUP58 chr13:25889495 3'AG 25889495 Downstream 69bp 13079 chr20 62836416 62836416 1 + G T UCEC 62836417 + 62836397 62836437 41 CCCAGGATGCACAGGCTCAGGGCACGTCCGGGGCAAGTACT CCCAGGATGCACAGGCTCATGGCACGTCCGGGGCAAGTACT < 41bp 0.465735843240049 0.799179577040806 NA NA prediction 0.598359154081612 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62836417 chr20:62836416 nonsynonymous SNV 0.910 4 20 hm7G_associated_SNPs_13629 0 0 0 0 2 MYT1 chr20:62836388 3'AG 62836388 Downstream 29bp 13080 chr20 62836416 62836416 1 + G T UCEC 62836417 + 62836397 62836437 41 CCCAGGATGCACAGGCTCAGGGCACGTCCGGGGCAAGTACT CCCAGGATGCACAGGCTCATGGCACGTCCGGGGCAAGTACT < 41bp 0.465735843240049 0.799179577040806 NA NA prediction 0.598359154081612 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62836417 chr20:62836416 nonsynonymous SNV 0.910 4 20 hm7G_associated_SNPs_13629 0 0 0 0 2 MYT1 chr20:62836450 5'GT 62836450 Upstream 35bp 13081 chr10 127434403 127434403 1 + G T LUAD 127434404 + 127434384 127434424 41 CCCTTTTATTATGTAACACGGGAAGGCTCATGCGGATTTGT CCCTTTTATTATGTAACACTGGAAGGCTCATGCGGATTTGT < 41bp 0.483309299897886 0.799153449368623 NA NA prediction 0.598306898737246 Functional Gain - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127434404 chr10:127434403 synonymous SNV . 0 20 hm7G_associated_SNPs_13630 0 0 1 0 1 EDRF1 chr10:127434499 5'GT 127434499 Upstream 97bp 13082 chr6 159184389 159184389 1 + G T UCEC 159184390 + 159184370 159184410 41 CTGAAGTCGCCAGTCCTGAGGAAGCAGGCTTGCCCCCAGTG CTGAAGTCGCCAGTCCTGATGAAGCAGGCTTGCCCCCAGTG < 41bp 0.526518342505639 0.825646827788195 NA NA prediction 0.598256970565111 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159184390 chr6:159184389 nonsynonymous SNV 0.886 1 20 hm7G_associated_SNPs_13632 0 0 0 0 1 SYTL3 chr6:159184336 3'AG 159184336 Downstream 54bp 13083 chr1 183204853 183204853 1 + G T LUSC 183204854 + 183204834 183204874 41 GACGGTGCTGTGGTGCAAGGGCTTGTGGAAAAGTACGTTCC GACGGTGCTGTGGTGCAAGTGCTTGTGGAAAAGTACGTTCC < 41bp 0.528220478566186 0.827348834474154 NA NA prediction 0.598256711815937 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183204854 chr1:183204853 nonsynonymous SNV 0.257 0 20 hm7G_associated_SNPs_13633 0 0 0 0 1 LAMC2 chr1:183204865 5'GT 183204865 Upstream 13bp 13084 chr4 1807634 1807634 1 + G T SKCM 1807635 + 1807615 1807655 41 TGTCCTGTGCCTACCAGGTGGCCCGGGGCATGGAGTACTTG TGTCCTGTGCCTACCAGGTTGCCCGGGGCATGGAGTACTTG < 41bp 0.473402546010605 0.799128029603802 NA NA prediction 0.598256059207603 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807635 chr4:1807634 synonymous SNV . 0 20 hm7G_associated_SNPs_13634 0 0 1 0 1 FGFR3 chr4:1807667 5'GT 1807667 Upstream 34bp 13085 chr1 205039621 205039621 1 + G T UCEC 205039622 + 205039602 205039642 41 CAGAGATGAACGTGACCTGGGAACCCGTGCAGCAGGACATG CAGAGATGAACGTGACCTGTGAACCCGTGCAGCAGGACATG < 41bp 0.547185509571162 0.846310800027801 NA NA prediction 0.59825058091328 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039622 chr1:205039621 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13635 0 0 0 0 2 CNTN2 chr1:205039554 3'AG 205039554 Downstream 68bp 13086 chr1 205039621 205039621 1 + G T UCEC 205039622 + 205039602 205039642 41 CAGAGATGAACGTGACCTGGGAACCCGTGCAGCAGGACATG CAGAGATGAACGTGACCTGTGAACCCGTGCAGCAGGACATG < 41bp 0.547185509571162 0.846310800027801 NA NA prediction 0.59825058091328 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039622 chr1:205039621 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_13635 0 0 0 0 2 CNTN2 chr1:205039666 5'GT 205039666 Upstream 46bp 13087 chr2 88396125 88396125 1 + G T THCA 88396126 + 88396106 88396146 41 TGCTTCAGAATTGAGCTCCGGGCCCTAGGCAAGATCTCAGA TGCTTCAGAATTGAGCTCCTGGCCCTAGGCAAGATCTCAGA < 41bp 0.491774389883458 0.799124403611251 NA NA prediction 0.598248807222502 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88396126 chr2:88396125 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_13636 0 0 0 0 1 SMYD1 chr2:88396114 3'AG 88396114 Downstream 12bp 13088 chr7 129950788 129950788 1 + G T LUAD 129950789 + 129950769 129950809 41 GCTGCTGATGTATCCATATGGGTACTCAGTCAAAAAGGCCC GCTGCTGATGTATCCATATTGGTACTCAGTCAAAAAGGCCC < 41bp 0.539246562900485 0.838363568876899 NA NA prediction 0.598234011952828 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950789 chr7:129950788 nonsynonymous SNV 0.092 4 20 hm7G_associated_SNPs_13638 0 0 0 0 1 CPA4 chr7:129950826 5'GT 129950826 Upstream 39bp 13089 chr3 157289063 157289063 1 + G T UCEC 157289064 + 157289044 157289084 41 AGACCTGACAAATTTCAAAGGCTGCTACCTGACTAACCAAC AGACCTGACAAATTTCAAATGCTGCTACCTGACTAACCAAC < 41bp 0.512852222312632 0.811966898877335 NA NA prediction 0.598229353129405 Functional Gain - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157289064 chr3:157289063 nonsynonymous SNV 0.017 3 20 hm7G_associated_SNPs_13639 0 0 0 0 2 PQLC2L chr3:157288966 3'AG 157288966 Downstream 98bp 13090 chr3 157289063 157289063 1 + G T UCEC 157289064 + 157289044 157289084 41 AGACCTGACAAATTTCAAAGGCTGCTACCTGACTAACCAAC AGACCTGACAAATTTCAAATGCTGCTACCTGACTAACCAAC < 41bp 0.512852222312632 0.811966898877335 NA NA prediction 0.598229353129405 Functional Gain - PQLC2L ENSG00000174899 CDS Human protein_coding chr3:157289064 chr3:157289063 nonsynonymous SNV 0.017 3 20 hm7G_associated_SNPs_13639 0 0 0 0 2 PQLC2L chr3:157289095 5'GT 157289095 Upstream 33bp 13091 chr22 43524600 43524600 1 + G T rs563057679 43524601 + 43524581 43524621 41 CTTAAGGAGAACATAATGAGGTTCTGGAGATCCCCGAACCC CTTAAGGAGAACATAATGATGTTCTGGAGATCCCCGAACCC < 41bp 0.494481024506438 0.799112270604546 NA NA prediction 0.598224541209092 Functional Gain - BIK ENSG00000100290 CDS Human protein_coding chr22:43524601 chr22:43524600 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_13640 0 0 0 0 2 BIK chr22:43524502 3'AG 43524502 Downstream 99bp 13092 chr22 43524600 43524600 1 + G T rs563057679 43524601 + 43524581 43524621 41 CTTAAGGAGAACATAATGAGGTTCTGGAGATCCCCGAACCC CTTAAGGAGAACATAATGATGTTCTGGAGATCCCCGAACCC < 41bp 0.494481024506438 0.799112270604546 NA NA prediction 0.598224541209092 Functional Gain - BIK ENSG00000100290 CDS Human protein_coding chr22:43524601 chr22:43524600 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_13640 0 0 0 0 2 BIK chr22:43524631 5'GT 43524631 Upstream 32bp 13093 chr15 75647034 75647034 1 + G T UCEC 75647035 + 75647015 75647055 41 GCCCCTTCCAGGACACGAAGGGCAAAGAGAGACCTTCCTAA GCCCCTTCCAGGACACGAATGGCAAAGAGAGACCTTCCTAA < 41bp 0.517596193892388 0.816694240067633 NA NA prediction 0.59819609235049 Functional Gain - NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75647035 chr15:75647034 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_13642 0 0 0 0 1 NEIL1 chr15:75646994 3'AG 75646994 Downstream 41bp 13094 chr2 61319682 61319682 1 + G T SKCM 61319683 + 61319663 61319703 41 GATGTATACTGGCGATTGTGGGGAACAATCAATTGGCTGAC GATGTATACTGGCGATTGTTGGGAACAATCAATTGGCTGAC < 41bp 0.499218827908888 0.799092920069713 NA NA prediction 0.598185840139426 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61319683 chr2:61319682 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13643 0 0 0 0 2 KIAA1841 chr2:61319599 3'AG 61319599 Downstream 84bp 13095 chr2 61319682 61319682 1 + G T SKCM 61319683 + 61319663 61319703 41 GATGTATACTGGCGATTGTGGGGAACAATCAATTGGCTGAC GATGTATACTGGCGATTGTTGGGAACAATCAATTGGCTGAC < 41bp 0.499218827908888 0.799092920069713 NA NA prediction 0.598185840139426 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61319683 chr2:61319682 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13643 0 0 0 0 2 KIAA1841 chr2:61319722 5'GT 61319722 Upstream 41bp 13096 chr4 72316975 72316975 1 + G T UCEC 72316976 + 72316956 72316996 41 CCATGATGGAGGTCACGGAGGAGGAGGACATGGGGATTGTG CCATGATGGAGGTCACGGATGAGGAGGACATGGGGATTGTG < 41bp 0.505108747855031 0.804198730732894 NA NA prediction 0.598179965755727 Functional Gain - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72316976 chr4:72316975 stopgain 0.993 1 20 hm7G_associated_SNPs_13644 0 0 0 0 2 SLC4A4 chr4:72316905 3'AG 72316905 Downstream 71bp 13097 chr4 72316975 72316975 1 + G T UCEC 72316976 + 72316956 72316996 41 CCATGATGGAGGTCACGGAGGAGGAGGACATGGGGATTGTG CCATGATGGAGGTCACGGATGAGGAGGACATGGGGATTGTG < 41bp 0.505108747855031 0.804198730732894 NA NA prediction 0.598179965755727 Functional Gain - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72316976 chr4:72316975 stopgain 0.993 1 20 hm7G_associated_SNPs_13644 0 0 0 0 2 SLC4A4 chr4:72317018 5'GT 72317018 Upstream 44bp 13098 chr3 50230725 50230725 1 + G T SARC 50230726 + 50230706 50230746 41 ACCAGGACGGGTACTCGCTGGAAGAGTGCCTCGAGTTTATC ACCAGGACGGGTACTCGCTTGAAGAGTGCCTCGAGTTTATC < 41bp 0.536817795458172 0.835899677469976 NA NA prediction 0.598163764023609 Functional Gain - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50230726 chr3:50230725 synonymous SNV . 0 20 hm7G_associated_SNPs_13645 0 0 0 0 1 GNAT1 chr3:50230698 3'AG 50230698 Downstream 28bp 13099 chr8 25209284 25209284 1 + G T LUAD 25209285 + 25209265 25209305 41 ATTCAGCTTATAATGGAACGGCTGCTGAGAAGGATCAACCG ATTCAGCTTATAATGGAACTGCTGCTGAGAAGGATCAACCG < 41bp 0.491595461840642 0.799059853353327 NA NA prediction 0.598119706706654 Functional Gain - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25209285 chr8:25209284 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_13647 0 0 1 0 1 DOCK5 chr8:25209342 5'GT 25209342 Upstream 59bp 13100 chr1 171076886 171076886 1 + G T CESC 171076887 + 171076867 171076907 41 TGGGATGTTACCACTGAAAGGGATGGTAAAAAAGAATCGGC TGGGATGTTACCACTGAAATGGATGGTAAAAAAGAATCGGC < 41bp 0.510856959529729 0.809914711030057 NA NA prediction 0.598115503000655 Functional Gain - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171076887 chr1:171076886 nonsynonymous SNV 0.476 1 20 hm7G_associated_SNPs_13648 0 0 0 0 2 FMO3 chr1:171076816 3'AG 171076816 Downstream 71bp 13101 chr1 171076886 171076886 1 + G T CESC 171076887 + 171076867 171076907 41 TGGGATGTTACCACTGAAAGGGATGGTAAAAAAGAATCGGC TGGGATGTTACCACTGAAATGGATGGTAAAAAAGAATCGGC < 41bp 0.510856959529729 0.809914711030057 NA NA prediction 0.598115503000655 Functional Gain - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171076887 chr1:171076886 nonsynonymous SNV 0.476 1 20 hm7G_associated_SNPs_13648 0 0 0 0 2 FMO3 chr1:171076978 5'GT 171076978 Upstream 93bp 13102 chr10 114170385 114170385 1 + G T COAD 114170386 + 114170366 114170406 41 GTCATCTGCTTCACCAGTGGGACCACAGGTCTGTGCCCATG GTCATCTGCTTCACCAGTGTGACCACAGGTCTGTGCCCATG < 41bp 0.523657229893051 0.82270853421261 NA NA prediction 0.598102608639119 Functional Gain - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114170386 chr10:114170385 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_13649 0 0 1 0 2 ACSL5 chr10:114170342 3'AG 114170342 Downstream 44bp 13103 chr10 114170385 114170385 1 + G T COAD 114170386 + 114170366 114170406 41 GTCATCTGCTTCACCAGTGGGACCACAGGTCTGTGCCCATG GTCATCTGCTTCACCAGTGTGACCACAGGTCTGTGCCCATG < 41bp 0.523657229893051 0.82270853421261 NA NA prediction 0.598102608639119 Functional Gain - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114170386 chr10:114170385 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_13649 0 0 1 0 2 ACSL5 chr10:114170393 5'GT 114170393 Upstream 9bp 13104 chr3 134884854 134884854 1 + G T LUAD 134884855 + 134884835 134884875 41 GCAGCTGCCCCTGATTGCTGGCTCGGCAGCGGCCGGGGTCG GCAGCTGCCCCTGATTGCTTGCTCGGCAGCGGCCGGGGTCG < 41bp 0.478349077286862 0.799041211293956 NA NA prediction 0.598082422587912 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134884855 chr3:134884854 nonsynonymous SNV 0.958 3 20 hm7G_associated_SNPs_13651 0 0 0 0 2 EPHB1 chr3:134884810 3'AG 134884810 Downstream 45bp 13105 chr3 134884854 134884854 1 + G T LUAD 134884855 + 134884835 134884875 41 GCAGCTGCCCCTGATTGCTGGCTCGGCAGCGGCCGGGGTCG GCAGCTGCCCCTGATTGCTTGCTCGGCAGCGGCCGGGGTCG < 41bp 0.478349077286862 0.799041211293956 NA NA prediction 0.598082422587912 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134884855 chr3:134884854 nonsynonymous SNV 0.958 3 20 hm7G_associated_SNPs_13651 0 0 0 0 2 EPHB1 chr3:134884918 5'GT 134884918 Upstream 65bp 13106 chr2 233396169 233396169 1 + G T COAD 233396170 + 233396150 233396190 41 CATGGCCATCCCCCTTATCGGCAAGTGAGTGACGCTCAAGC CATGGCCATCCCCCTTATCTGCAAGTGAGTGACGCTCAAGC < 41bp 0.514700803826361 0.813733963998559 NA NA prediction 0.598066320344397 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233396170 chr2:233396169 nonsynonymous SNV 0.710 4 20 hm7G_associated_SNPs_13653 0 0 0 0 1 CHRND chr2:233396173 5'GT 233396173 Upstream 5bp 13107 chr9 96847584 96847584 1 + G T LIHC 96847585 + 96847565 96847605 41 AAAGTAGGGGAGCGTTTACGGCATGTCATTCCTGGACACAT AAAGTAGGGGAGCGTTTACTGCATGTCATTCCTGGACACAT < 41bp 0.481197336857792 0.799031354582349 NA NA prediction 0.598062709164698 Functional Gain - PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96847585 chr9:96847584 nonsynonymous SNV 0.967 2 20 hm7G_associated_SNPs_13654 0 0 0 0 1 PTPDC1 chr9:96847533 3'AG 96847533 Downstream 52bp 13108 chr5 131670546 131670546 1 - C A rs272879 131670545 - 131670525 131670565 41 TGATATAACGCCTGGGCAGGGTTCGCAATAGCAGCCAGGCT TGATATAACGCCTGGGCAGTGTTCGCAATAGCAGCCAGGCT < 41bp 0.498906363620672 0.799003920157038 NA NA prediction 0.598007840314077 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131670545 chr5:131670546 synonymous SNV . 0 20 hm7G_associated_SNPs_13655 0 0 0 0 2 SLC22A4 chr5:131670478 5'GT 131670478 Upstream 69bp 13109 chr5 131670546 131670546 1 - C A rs272879 131670545 - 131670525 131670565 41 TGATATAACGCCTGGGCAGGGTTCGCAATAGCAGCCAGGCT TGATATAACGCCTGGGCAGTGTTCGCAATAGCAGCCAGGCT < 41bp 0.498906363620672 0.799003920157038 NA NA prediction 0.598007840314077 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131670545 chr5:131670546 synonymous SNV . 0 20 hm7G_associated_SNPs_13655 0 0 0 0 2 SLC22A4 chr5:131670619 3'AG 131670619 Downstream 74bp 13110 chr3 12856866 12856866 1 + G T STAD 12856867 + 12856847 12856887 41 GGCAAACACAGCCCCCGAAGGGATGGCTGGAGGCCATGGAG GGCAAACACAGCCCCCGAATGGATGGCTGGAGGCCATGGAG < 41bp 0.550182676000566 0.849145172957646 NA NA prediction 0.597924993914161 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12856867 chr3:12856866 nonsynonymous SNV 0.091 0 20 hm7G_associated_SNPs_13659 0 0 0 0 1 CAND2 chr3:12856932 5'GT 12856932 Upstream 67bp 13111 chr11 64120574 64120574 1 + G T COAD 64120575 + 64120555 64120595 41 GGGAGCGGGGTGAGCTGCAGGGTGAACGCGGGGAGCTACGG GGGAGCGGGGTGAGCTGCATGGTGAACGCGGGGAGCTACGG < 41bp 0.543238248318945 0.842199463891852 NA NA prediction 0.597922431145812 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64120575 chr11:64120574 nonsynonymous SNV 0.950 2 20 hm7G_associated_SNPs_13660 0 0 1 0 1 CCDC88B chr11:64120526 3'AG 64120526 Downstream 49bp 13112 chr3 179082112 179082112 1 + G T LUSC 179082113 + 179082093 179082133 41 CAGATGTCACTACAGAGCTGGATAGCTGGATTGATAAGTTT CAGATGTCACTACAGAGCTTGATAGCTGGATTGATAAGTTT < 41bp 0.509738446366046 0.808690384119981 NA NA prediction 0.59790387550787 Functional Gain - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082113 chr3:179082112 synonymous SNV . 0 20 hm7G_associated_SNPs_13661 0 0 1 0 2 MFN1 chr3:179082085 3'AG 179082085 Downstream 28bp 13113 chr3 179082112 179082112 1 + G T LUSC 179082113 + 179082093 179082133 41 CAGATGTCACTACAGAGCTGGATAGCTGGATTGATAAGTTT CAGATGTCACTACAGAGCTTGATAGCTGGATTGATAAGTTT < 41bp 0.509738446366046 0.808690384119981 NA NA prediction 0.59790387550787 Functional Gain - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082113 chr3:179082112 synonymous SNV . 0 20 hm7G_associated_SNPs_13661 0 0 1 0 2 MFN1 chr3:179082193 5'GT 179082193 Upstream 82bp 13114 chr16 58312454 58312454 1 + G T UCEC 58312455 + 58312435 58312475 41 CCGAGTTCCGGGCACCACAGGTGATGACTTACGTCCGGGAG CCGAGTTCCGGGCACCACATGTGATGACTTACGTCCGGGAG < 41bp 0.522438946358539 0.821366463636969 NA NA prediction 0.59785503455686 Functional Gain - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58312455 chr16:58312454 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_13662 0 0 0 0 2 CCDC113 chr16:58312386 3'AG 58312386 Downstream 69bp 13115 chr16 58312454 58312454 1 + G T UCEC 58312455 + 58312435 58312475 41 CCGAGTTCCGGGCACCACAGGTGATGACTTACGTCCGGGAG CCGAGTTCCGGGCACCACATGTGATGACTTACGTCCGGGAG < 41bp 0.522438946358539 0.821366463636969 NA NA prediction 0.59785503455686 Functional Gain - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58312455 chr16:58312454 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_13662 0 0 0 0 2 CCDC113 chr16:58312541 5'GT 58312541 Upstream 88bp 13116 chr2 113831957 113831957 1 + G T LIHC 113831958 + 113831938 113831978 41 CAAGAGATGGCCAGCTGCTGGTGGGAGATCCTGTTGCAGAC CAAGAGATGGCCAGCTGCTTGTGGGAGATCCTGTTGCAGAC < 41bp 0.492255257704544 0.798916754483906 NA NA prediction 0.597833508967812 Functional Gain - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113831958 chr2:113831957 synonymous SNV . 0 20 hm7G_associated_SNPs_13663 0 0 0 0 2 IL1F10 chr2:113831906 3'AG 113831906 Downstream 52bp 13117 chr2 113831957 113831957 1 + G T LIHC 113831958 + 113831938 113831978 41 CAAGAGATGGCCAGCTGCTGGTGGGAGATCCTGTTGCAGAC CAAGAGATGGCCAGCTGCTTGTGGGAGATCCTGTTGCAGAC < 41bp 0.492255257704544 0.798916754483906 NA NA prediction 0.597833508967812 Functional Gain - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113831958 chr2:113831957 synonymous SNV . 0 20 hm7G_associated_SNPs_13663 0 0 0 0 2 IL1F10 chr2:113831991 5'GT 113831991 Upstream 35bp 13118 chr1 221054571 221054571 1 + G T LUSC 221054572 + 221054552 221054592 41 AACCGGTGGGCGGCCCGCCGGGGTGCACCTCTCAGGCCTGC AACCGGTGGGCGGCCCGCCTGGGTGCACCTCTCAGGCCTGC < 41bp 0.53365711131349 0.832557999108107 NA NA prediction 0.597801775589234 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221054572 chr1:221054571 nonsynonymous SNV 0.233 5 20 hm7G_associated_SNPs_13664 0 0 0 0 1 HLX chr1:221054536 3'AG 221054536 Downstream 36bp 13119 chr12 52306268 52306268 1 + G T ESCA 52306269 + 52306249 52306289 41 TGCAGGGACCATGACCTTGGGCTCCCCCAGGAAAGGCCTTC TGCAGGGACCATGACCTTGTGCTCCCCCAGGAAAGGCCTTC < 41bp 0.473502902032179 0.798898381484862 NA NA prediction 0.597796762969725 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52306269 chr12:52306268 nonsynonymous SNV 0.702 2 20 hm7G_associated_SNPs_13665 0 0 0 0 1 ACVRL1 chr12:52306254 3'AG 52306254 Downstream 15bp 13120 chrX 11130219 11130219 1 + G T LUAD 11130220 + 11130200 11130240 41 CTCCTGCTGTTGCAGTTCAGGCCTCAAATGCTTCAGCGTCC CTCCTGCTGTTGCAGTTCATGCCTCAAATGCTTCAGCGTCC < 41bp 0.512788385535697 0.811677877624265 NA NA prediction 0.597778984177137 Functional Gain - HCCS ENSG00000004961 CDS Human protein_coding chrX:11130220 chrX:11130219 nonsynonymous SNV 0.909 2 20 hm7G_associated_SNPs_13666 0 0 1 0 2 HCCS chrX:11130139 3'AG 11130139 Downstream 81bp 13121 chrX 11130219 11130219 1 + G T LUAD 11130220 + 11130200 11130240 41 CTCCTGCTGTTGCAGTTCAGGCCTCAAATGCTTCAGCGTCC CTCCTGCTGTTGCAGTTCATGCCTCAAATGCTTCAGCGTCC < 41bp 0.512788385535697 0.811677877624265 NA NA prediction 0.597778984177137 Functional Gain - HCCS ENSG00000004961 CDS Human protein_coding chrX:11130220 chrX:11130219 nonsynonymous SNV 0.909 2 20 hm7G_associated_SNPs_13666 0 0 1 0 2 HCCS chrX:11130280 5'GT 11130280 Upstream 62bp 13122 chr5 148695460 148695460 1 + G T LUAD 148695461 + 148695441 148695481 41 TGTTCTACCCTTGGCCGCCGGGAGACCTGTGATCACGGTAG TGTTCTACCCTTGGCCGCCTGGAGACCTGTGATCACGGTAG < 41bp 0.479409741459121 0.798872320214227 NA NA prediction 0.597744640428453 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695461 chr5:148695460 nonsynonymous SNV 0.718 2 20 hm7G_associated_SNPs_13667 0 0 0 0 2 AFAP1L1 chr5:148695384 3'AG 148695384 Downstream 77bp 13123 chr5 148695460 148695460 1 + G T LUAD 148695461 + 148695441 148695481 41 TGTTCTACCCTTGGCCGCCGGGAGACCTGTGATCACGGTAG TGTTCTACCCTTGGCCGCCTGGAGACCTGTGATCACGGTAG < 41bp 0.479409741459121 0.798872320214227 NA NA prediction 0.597744640428453 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148695461 chr5:148695460 nonsynonymous SNV 0.718 2 20 hm7G_associated_SNPs_13667 0 0 0 0 2 AFAP1L1 chr5:148695477 5'GT 148695477 Upstream 18bp 13124 chr8 22145050 22145050 1 + G T CHOL 22145051 + 22145031 22145071 41 TATTTTCCAGCCCCAATGTGGAGTGCAAAAGCATGAGGTTC TATTTTCCAGCCCCAATGTTGAGTGCAAAAGCATGAGGTTC < 41bp 0.524857855260115 0.823689128154626 NA NA prediction 0.597662545789023 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22145051 chr8:22145050 synonymous SNV . 0 20 hm7G_associated_SNPs_13669 0 0 0 0 1 PIWIL2 chr8:22145041 3'AG 22145041 Downstream 10bp 13125 chr10 135370273 135370273 1 - C A GBM 135370272 - 135370252 135370292 41 GGCCAGCACAAGGACCTCTGGGACTTCCACGTGAGTCCCTC GGCCAGCACAAGGACCTCTTGGACTTCCACGTGAGTCCCTC < 41bp 0.469866101444462 0.798827591089917 NA NA prediction 0.597655182179833 Functional Gain - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370272 chr10:135370273 nonsynonymous SNV 0.975 0 20 hm7G_associated_SNPs_13670 0 0 0 0 2 SYCE1 chr10:135370263 5'GT 135370263 Upstream 11bp 13126 chr10 135370273 135370273 1 - C A GBM 135370272 - 135370252 135370292 41 GGCCAGCACAAGGACCTCTGGGACTTCCACGTGAGTCCCTC GGCCAGCACAAGGACCTCTTGGACTTCCACGTGAGTCCCTC < 41bp 0.469866101444462 0.798827591089917 NA NA prediction 0.597655182179833 Functional Gain - SYCE1 ENSG00000171772 CDS Human protein_coding chr10:135370272 chr10:135370273 nonsynonymous SNV 0.975 0 20 hm7G_associated_SNPs_13670 0 0 0 0 2 SYCE1 chr10:135370326 3'AG 135370326 Downstream 54bp 13127 chr17 4835962 4835962 1 + G T STAD 4835963 + 4835943 4835983 41 ACCCCCACCCCATCTGTGAGGTCTCCAAAGTGGCCAGCCAC ACCCCCACCCCATCTGTGATGTCTCCAAAGTGGCCAGCCAC < 41bp 0.499389435245704 0.798814240974234 NA NA prediction 0.597628481948467 Functional Gain - GP1BA ENSG00000185245 CDS Human protein_coding chr17:4835963 chr17:4835962 nonsynonymous SNV 0.253 1 20 hm7G_associated_SNPs_13671 0 0 0 0 1 GP1BA chr17:4835894 3'AG 4835894 Downstream 69bp 13128 chr9 131559484 131559484 1 + G T STAD 131559485 + 131559465 131559505 41 TGGCCCGGAACCGGAGTGGGGTCACAAATGTGAGTGCCAAC TGGCCCGGAACCGGAGTGGTGTCACAAATGTGAGTGCCAAC < 41bp 0.488080114277351 0.798811126952196 NA NA prediction 0.597622253904392 Functional Gain - TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131559485 chr9:131559484 synonymous SNV . 0 20 hm7G_associated_SNPs_13672 0 0 1 0 1 TBC1D13 chr9:131559493 5'GT 131559493 Upstream 10bp 13129 chr14 74041689 74041689 1 + G T UCEC 74041690 + 74041670 74041710 41 CCATGGCCTCTTTCCTGAAGGGCATCACGGCTGCTGTCGTC CCATGGCCTCTTTCCTGAATGGCATCACGGCTGCTGTCGTC < 41bp 0.487625714207482 0.798807054788646 NA NA prediction 0.597614109577292 Functional Gain - ACOT2 ENSG00000119673 CDS Human protein_coding chr14:74041690 chr14:74041689 nonsynonymous SNV 0.662 2 20 hm7G_associated_SNPs_13673 0 0 0 0 1 ACOT2 chr14:74041612 3'AG 74041612 Downstream 78bp 13130 chr11 1904722 1904722 1 + G T LUAD 1904723 + 1904703 1904743 41 GTTGAGTCTGAGCAAGGAGGGGCCAGGCCCAGAGGACACTG GTTGAGTCTGAGCAAGGAGTGGCCAGGCCCAGAGGACACTG < 41bp 0.471988768378631 0.798805321946907 NA NA prediction 0.597610643893814 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1904723 chr11:1904722 nonsynonymous SNV 0.131 3 20 hm7G_associated_SNPs_13674 0 0 0 0 2 LSP1 chr11:1904649 3'AG 1904649 Downstream 74bp 13131 chr11 1904722 1904722 1 + G T LUAD 1904723 + 1904703 1904743 41 GTTGAGTCTGAGCAAGGAGGGGCCAGGCCCAGAGGACACTG GTTGAGTCTGAGCAAGGAGTGGCCAGGCCCAGAGGACACTG < 41bp 0.471988768378631 0.798805321946907 NA NA prediction 0.597610643893814 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1904723 chr11:1904722 nonsynonymous SNV 0.131 3 20 hm7G_associated_SNPs_13674 0 0 0 0 2 LSP1 chr11:1904790 5'GT 1904790 Upstream 69bp 13132 chr2 68882018 68882018 1 + G T LUAD 68882019 + 68881999 68882039 41 GTTCTTGCCCTAGGTATCTGGCTATTGTCCATCCGCTGAGA GTTCTTGCCCTAGGTATCTTGCTATTGTCCATCCGCTGAGA < 41bp 0.517365687681987 0.816167120784082 NA NA prediction 0.597602866204189 Functional Gain - PROKR1 ENSG00000169618 CDS Human protein_coding chr2:68882019 chr2:68882018 synonymous SNV . 0 20 hm7G_associated_SNPs_13675 0 0 0 0 1 PROKR1 chr2:68882012 3'AG 68882012 Downstream 7bp 13133 chr3 9792631 9792631 1 + G T LUAD 9792632 + 9792612 9792652 41 ATGTGCCTTGGGCTCAGGTGGAGGGAGCAAAGTCCTGCACA ATGTGCCTTGGGCTCAGGTTGAGGGAGCAAAGTCCTGCACA < 41bp 0.504757712184407 0.803549126118528 NA NA prediction 0.597582827868242 Functional Gain - OGG1 ENSG00000114026 CDS Human protein_coding chr3:9792632 chr3:9792631 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_13676 0 0 1 0 1 OGG1 chr3:9792629 3'AG 9792629 Downstream 3bp 13134 chr15 58834130 58834130 1 + G T STAD 58834131 + 58834111 58834151 41 TCCGCAACACCCGCCTTGTGGGCAAGGAGGTCGCGGCTCTT TCCGCAACACCCGCCTTGTTGGCAAGGAGGTCGCGGCTCTT < 41bp 0.52910145337966 0.827889825750976 NA NA prediction 0.597576744742631 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834131 chr15:58834130 synonymous SNV . 0 20 hm7G_associated_SNPs_13678 0 0 1 0 1 LIPC chr15:58834166 5'GT 58834166 Upstream 37bp 13135 chr11 58962747 58962747 1 + G T LGG 58962748 + 58962728 58962768 41 GACAGGCACCCAACCTCCAGGGAAGATGGAGTACCACCTCA GACAGGCACCCAACCTCCATGGAAGATGGAGTACCACCTCA < 41bp 0.54780121044175 0.846580040444864 NA NA prediction 0.59755766000623 Functional Gain - DTX4 ENSG00000110042 CDS Human protein_coding chr11:58962748 chr11:58962747 nonsynonymous SNV 0.806 4 20 hm7G_associated_SNPs_13680 0 0 0 0 2 DTX4 chr11:58962681 3'AG 58962681 Downstream 67bp 13136 chr11 58962747 58962747 1 + G T LGG 58962748 + 58962728 58962768 41 GACAGGCACCCAACCTCCAGGGAAGATGGAGTACCACCTCA GACAGGCACCCAACCTCCATGGAAGATGGAGTACCACCTCA < 41bp 0.54780121044175 0.846580040444864 NA NA prediction 0.59755766000623 Functional Gain - DTX4 ENSG00000110042 CDS Human protein_coding chr11:58962748 chr11:58962747 nonsynonymous SNV 0.806 4 20 hm7G_associated_SNPs_13680 0 0 0 0 2 DTX4 chr11:58962842 5'GT 58962842 Upstream 96bp 13137 chr17 7917259 7917259 1 + G T LUSC 7917260 + 7917240 7917280 41 CCTTGGTGTCCATGGACCAGGCACCTGTCGAGTGTATCCTC CCTTGGTGTCCATGGACCATGCACCTGTCGAGTGTATCCTC < 41bp 0.467246697733932 0.798776882410673 NA NA prediction 0.597553764821347 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7917260 chr17:7917259 nonsynonymous SNV 0.971 2 20 hm7G_associated_SNPs_13681 0 0 0 0 2 GUCY2D chr17:7917198 3'AG 7917198 Downstream 62bp 13138 chr17 7917259 7917259 1 + G T LUSC 7917260 + 7917240 7917280 41 CCTTGGTGTCCATGGACCAGGCACCTGTCGAGTGTATCCTC CCTTGGTGTCCATGGACCATGCACCTGTCGAGTGTATCCTC < 41bp 0.467246697733932 0.798776882410673 NA NA prediction 0.597553764821347 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7917260 chr17:7917259 nonsynonymous SNV 0.971 2 20 hm7G_associated_SNPs_13681 0 0 0 0 2 GUCY2D chr17:7917346 5'GT 7917346 Upstream 88bp 13139 chr8 126023827 126023827 1 + G T UCEC 126023828 + 126023808 126023848 41 ACTGACAATTCTCATCTGAGGTCCATGCCAGCAAGCTTCCT ACTGACAATTCTCATCTGATGTCCATGCCAGCAAGCTTCCT < 41bp 0.509923227373022 0.808692033134787 NA NA prediction 0.59753761152353 Functional Gain - SQLE ENSG00000104549 CDS Human protein_coding chr8:126023828 chr8:126023827 nonsynonymous SNV 0.937 4 20 hm7G_associated_SNPs_13682 0 0 1 0 2 SQLE chr8:126023779 3'AG 126023779 Downstream 49bp 13140 chr8 126023827 126023827 1 + G T UCEC 126023828 + 126023808 126023848 41 ACTGACAATTCTCATCTGAGGTCCATGCCAGCAAGCTTCCT ACTGACAATTCTCATCTGATGTCCATGCCAGCAAGCTTCCT < 41bp 0.509923227373022 0.808692033134787 NA NA prediction 0.59753761152353 Functional Gain - SQLE ENSG00000104549 CDS Human protein_coding chr8:126023828 chr8:126023827 nonsynonymous SNV 0.937 4 20 hm7G_associated_SNPs_13682 0 0 1 0 2 SQLE chr8:126023874 5'GT 126023874 Upstream 48bp 13141 chr20 25205927 25205927 1 + G T LUAD 25205928 + 25205908 25205948 41 CCTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGC CCTGCTACTCCAGGAGTTCTGCTTTCCCAGGAGCAAAGTGC < 41bp 0.494109631849926 0.798764393912114 NA NA prediction 0.597528787824228 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205928 chr20:25205927 nonsynonymous SNV 0.807 4 20 hm7G_associated_SNPs_13683 0 0 1 0 2 ENTPD6 chr20:25205841 3'AG 25205841 Downstream 87bp 13142 chr20 25205927 25205927 1 + G T LUAD 25205928 + 25205908 25205948 41 CCTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGC CCTGCTACTCCAGGAGTTCTGCTTTCCCAGGAGCAAAGTGC < 41bp 0.494109631849926 0.798764393912114 NA NA prediction 0.597528787824228 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25205928 chr20:25205927 nonsynonymous SNV 0.807 4 20 hm7G_associated_SNPs_13683 0 0 1 0 2 ENTPD6 chr20:25205953 5'GT 25205953 Upstream 27bp 13143 chr9 137777710 137777710 1 + G T LUAD 137777711 + 137777691 137777731 41 GCTGGGGGAGTTCTGGCTGGGGAATGACAACATCCACGCCC GCTGGGGGAGTTCTGGCTGTGGAATGACAACATCCACGCCC < 41bp 0.473791659399366 0.798760165040494 NA NA prediction 0.597520330080988 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777711 chr9:137777710 nonsynonymous SNV 0.871 3 20 hm7G_associated_SNPs_13684 0 0 0 0 1 FCN2 chr9:137777614 3'AG 137777614 Downstream 97bp 13144 chr11 70194330 70194330 1 + G T SKCM 70194331 + 70194311 70194351 41 AAAGAAAATACAGAGCAGCGGGCAGAGGAGATTGAAAGTCG AAAGAAAATACAGAGCAGCTGGCAGAGGAGATTGAAAGTCG < 41bp 0.497342833435576 0.798750016098951 NA NA prediction 0.597500032197902 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70194331 chr11:70194330 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13685 0 0 1 0 1 PPFIA1 chr11:70194295 3'AG 70194295 Downstream 36bp 13145 chr19 51828650 51828650 1 + G T UCEC 51828651 + 51828631 51828671 41 TGTGACGGTGAATGAGGGGGGCAATGTGAACCTGCTTTGCC TGTGACGGTGAATGAGGGGTGCAATGTGAACCTGCTTTGCC < 41bp 0.536164111046512 0.834898954435172 NA NA prediction 0.59746968677732 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51828651 chr19:51828650 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_13688 0 0 0 0 2 IGLON5 chr19:51828600 3'AG 51828600 Downstream 51bp 13146 chr19 51828650 51828650 1 + G T UCEC 51828651 + 51828631 51828671 41 TGTGACGGTGAATGAGGGGGGCAATGTGAACCTGCTTTGCC TGTGACGGTGAATGAGGGGTGCAATGTGAACCTGCTTTGCC < 41bp 0.536164111046512 0.834898954435172 NA NA prediction 0.59746968677732 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51828651 chr19:51828650 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_13688 0 0 0 0 2 IGLON5 chr19:51828719 5'GT 51828719 Upstream 70bp 13147 chr12 54925582 54925582 1 + G T LUAD 54925583 + 54925563 54925603 41 GGGTTATCCTCAGTTTCAGGGCCATGGCCCAAGAGGGACTT GGGTTATCCTCAGTTTCAGTGCCATGGCCCAAGAGGGACTT < 41bp 0.468247937869537 0.798721413642228 NA NA prediction 0.597442827284456 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54925583 chr12:54925582 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_13691 0 0 1 0 2 NCKAP1L chr12:54925527 3'AG 54925527 Downstream 56bp 13148 chr12 54925582 54925582 1 + G T LUAD 54925583 + 54925563 54925603 41 GGGTTATCCTCAGTTTCAGGGCCATGGCCCAAGAGGGACTT GGGTTATCCTCAGTTTCAGTGCCATGGCCCAAGAGGGACTT < 41bp 0.468247937869537 0.798721413642228 NA NA prediction 0.597442827284456 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54925583 chr12:54925582 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_13691 0 0 1 0 2 NCKAP1L chr12:54925609 5'GT 54925609 Upstream 28bp 13149 chr5 121780331 121780331 1 + G T BRCA 121780332 + 121780312 121780352 41 CCCTCCCAGAGCGCCGAGCGGCAGGGGCACACCCTGTGCTC CCCTCCCAGAGCGCCGAGCTGCAGGGGCACACCCTGTGCTC < 41bp 0.486878235089228 0.798715772413716 NA NA prediction 0.597431544827432 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121780332 chr5:121780331 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_13692 0 0 0 0 2 SNCAIP chr5:121780258 3'AG 121780258 Downstream 74bp 13150 chr5 121780331 121780331 1 + G T BRCA 121780332 + 121780312 121780352 41 CCCTCCCAGAGCGCCGAGCGGCAGGGGCACACCCTGTGCTC CCCTCCCAGAGCGCCGAGCTGCAGGGGCACACCCTGTGCTC < 41bp 0.486878235089228 0.798715772413716 NA NA prediction 0.597431544827432 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121780332 chr5:121780331 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_13692 0 0 0 0 2 SNCAIP chr5:121780427 5'GT 121780427 Upstream 97bp 13151 chr17 74075408 74075408 1 + G T rs183734488 74075409 + 74075389 74075429 41 TCAGCATTACCTTGCTGTTGGTCCACGGGCAGGGCTTCCAA TCAGCATTACCTTGCTGTTTGTCCACGGGCAGGGCTTCCAA < 41bp 0.501025901323125 0.799741511031216 NA NA prediction 0.597431219416183 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075409 chr17:74075408 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_13693 0 0 0 0 1 ZACN chr17:74075442 5'GT 74075442 Upstream 35bp 13152 chrX 153700941 153700941 1 + G T LAML 153700942 + 153700922 153700962 41 CTCTCCCCCAGATTCTCACGGCTCTGGACCGAGATGCCTCT CTCTCCCCCAGATTCTCACTGCTCTGGACCGAGATGCCTCT < 41bp 0.504349483397047 0.803060241136646 NA NA prediction 0.597421515479197 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153700942 chrX:153700941 synonymous SNV . 0 20 hm7G_associated_SNPs_13694 0 0 1 0 1 PLXNA3 chrX:153700933 3'AG 153700933 Downstream 9bp 13153 chr3 184103932 184103932 1 + G T LUAD 184103933 + 184103913 184103953 41 CCAAGGGTAGCCCCAGAGGGGAGCTCCGAGGGCAGGTAGGT CCAAGGGTAGCCCCAGAGGTGAGCTCCGAGGGCAGGTAGGT < 41bp 0.540943397739884 0.839650250294546 NA NA prediction 0.597413705109325 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184103933 chr3:184103932 synonymous SNV . 0 20 hm7G_associated_SNPs_13695 0 0 1 0 2 CHRD chr3:184103834 3'AG 184103834 Downstream 99bp 13154 chr3 184103932 184103932 1 + G T LUAD 184103933 + 184103913 184103953 41 CCAAGGGTAGCCCCAGAGGGGAGCTCCGAGGGCAGGTAGGT CCAAGGGTAGCCCCAGAGGTGAGCTCCGAGGGCAGGTAGGT < 41bp 0.540943397739884 0.839650250294546 NA NA prediction 0.597413705109325 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184103933 chr3:184103932 synonymous SNV . 0 20 hm7G_associated_SNPs_13695 0 0 1 0 2 CHRD chr3:184103947 5'GT 184103947 Upstream 16bp 13155 chr11 65113459 65113459 1 + G T rs61736579 65113460 + 65113440 65113480 41 ACTGTGACTTCTGCCTGGGGGACTCAAAGATTAACAAGAAG ACTGTGACTTCTGCCTGGGTGACTCAAAGATTAACAAGAAG < 41bp 0.487240964206105 0.798697783735373 NA NA prediction 0.597395567470745 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113460 chr11:65113459 nonsynonymous SNV 0.896 2 20 hm7G_associated_SNPs_13696 0 0 1 0 2 DPF2 chr11:65113401 3'AG 65113401 Downstream 59bp 13156 chr11 65113459 65113459 1 + G T rs61736579 65113460 + 65113440 65113480 41 ACTGTGACTTCTGCCTGGGGGACTCAAAGATTAACAAGAAG ACTGTGACTTCTGCCTGGGTGACTCAAAGATTAACAAGAAG < 41bp 0.487240964206105 0.798697783735373 NA NA prediction 0.597395567470745 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113460 chr11:65113459 nonsynonymous SNV 0.896 2 20 hm7G_associated_SNPs_13696 0 0 1 0 2 DPF2 chr11:65113529 5'GT 65113529 Upstream 71bp 13157 chr17 38230773 38230773 1 + G T BRCA 38230774 + 38230754 38230794 41 CCAAGCAAGGTGGAGTGTGGGTCAGACCCAGAGGAGAACAG CCAAGCAAGGTGGAGTGTGTGTCAGACCCAGAGGAGAACAG < 41bp 0.514123461909875 0.812814768822604 NA NA prediction 0.59738261382546 Functional Gain - THRA ENSG00000126351 CDS Human protein_coding chr17:38230774 chr17:38230773 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13697 0 0 1 0 1 THRA chr17:38230794 5'GT 38230794 Upstream 22bp 13158 chr2 103095324 103095324 1 + G T STAD 103095325 + 103095305 103095345 41 CCTCTACCACAGGCTGCCAGGCCTCATGCCAGAAAGCTGCC CCTCTACCACAGGCTGCCATGCCTCATGCCAGAAAGCTGCC < 41bp 0.530945607779249 0.829636910490915 NA NA prediction 0.597382605423332 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103095325 chr2:103095324 nonsynonymous SNV 0.038 0 20 hm7G_associated_SNPs_13698 0 0 0 0 1 SLC9A4 chr2:103095298 3'AG 103095298 Downstream 27bp 13159 chr19 12979497 12979497 1 + G T UCEC 12979498 + 12979478 12979518 41 ACCTCTGCCCACCCTCGAAGGATGGGGATGCATCAGGCCCA ACCTCTGCCCACCCTCGAATGATGGGGATGCATCAGGCCCA < 41bp 0.541796925171074 0.840482025802646 NA NA prediction 0.597370201263145 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12979498 chr19:12979497 nonsynonymous SNV 0.989 0 20 hm7G_associated_SNPs_13699 0 0 0 0 1 MAST1 chr19:12979457 3'AG 12979457 Downstream 41bp 13160 chr20 19870240 19870240 1 + G T LIHC 19870241 + 19870221 19870261 41 GTGCAGTGGAGCCTCGCTGGGGGAAATGACAGCTTGGACCA GTGCAGTGGAGCCTCGCTGTGGGAAATGACAGCTTGGACCA < 41bp 0.541302078895848 0.83997781146477 NA NA prediction 0.597351465137845 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19870241 chr20:19870240 nonsynonymous SNV 0.870 1 20 hm7G_associated_SNPs_13700 0 0 0 0 1 RIN2 chr20:19870302 5'GT 19870302 Upstream 63bp 13161 chr1 164776878 164776878 1 + G T LUSC 164776879 + 164776859 164776899 41 CCAGTGAGGAAGCCAAAGAGGAGTTAGCCAAGAAGTGTGGC CCAGTGAGGAAGCCAAAGATGAGTTAGCCAAGAAGTGTGGC < 41bp 0.498007924378488 0.798674241836565 NA NA prediction 0.59734848367313 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164776879 chr1:164776878 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13701 0 0 1 0 2 PBX1 chr1:164776779 3'AG 164776779 Downstream 100bp 13162 chr1 164776878 164776878 1 + G T LUSC 164776879 + 164776859 164776899 41 CCAGTGAGGAAGCCAAAGAGGAGTTAGCCAAGAAGTGTGGC CCAGTGAGGAAGCCAAAGATGAGTTAGCCAAGAAGTGTGGC < 41bp 0.498007924378488 0.798674241836565 NA NA prediction 0.59734848367313 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164776879 chr1:164776878 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13701 0 0 1 0 2 PBX1 chr1:164776914 5'GT 164776914 Upstream 37bp 13163 chr14 90429515 90429515 1 + G T UCEC 90429516 + 90429496 90429536 41 CTAGTAGTGATGAAAGTGAGGAAGAAAAGCCAAAACCAGAC CTAGTAGTGATGAAAGTGATGAAGAAAAGCCAAAACCAGAC < 41bp 0.503785324929643 0.802442436915202 NA NA prediction 0.597314223971118 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90429516 chr14:90429515 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_13702 0 0 1 0 1 TDP1 chr14:90429452 3'AG 90429452 Downstream 64bp 13164 chr7 94052403 94052403 1 + G T STAD 94052404 + 94052384 94052424 41 CTGGCTTCGCTGGTGAGAAGGGTCCCTCTGGAGAGGCTGGT CTGGCTTCGCTGGTGAGAATGGTCCCTCTGGAGAGGCTGGT < 41bp 0.533968658082834 0.832623391023408 NA NA prediction 0.597309465881148 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94052404 chr7:94052403 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_13703 0 0 0 0 1 COL1A2 chr7:94052430 5'GT 94052430 Upstream 28bp 13165 chr8 42927425 42927425 1 + G T UCEC 42927426 + 42927406 42927446 41 GCAAAGAATTATCATGCCTGGCAGCATCGACAATGGGTTAT GCAAAGAATTATCATGCCTTGCAGCATCGACAATGGGTTAT < 41bp 0.500350321538737 0.799001673652564 NA NA prediction 0.597302704227654 Functional Gain - FNTA ENSG00000168522;ENSG00000254673 CDS Human other chr8:42927426 chr8:42927425 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13705 0 0 0 1 1 FNTA chr8:42927450 5'GT 42927450 Upstream 26bp 13166 chr9 135906488 135906488 1 + G T CESC 135906489 + 135906469 135906509 41 TGGTGTGCGTGGAGTACCCGGGAGTGGTGCGTGATGTGGCT TGGTGTGCGTGGAGTACCCTGGAGTGGTGCGTGATGTGGCT < 41bp 0.513000989652497 0.811622245889661 NA NA prediction 0.597242512474327 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135906489 chr9:135906488 synonymous SNV . 0 20 hm7G_associated_SNPs_13707 0 0 1 0 1 GTF3C5 chr9:135906551 5'GT 135906551 Upstream 64bp 13167 chr19 41268853 41268853 1 + G T LUAD 41268854 + 41268834 41268874 41 GCATTATGCACCACATGCCGGGCCAGCCGCCCTACATGCCG GCATTATGCACCACATGCCTGGCCAGCCGCCCTACATGCCG < 41bp 0.541530009433424 0.840133656389719 NA NA prediction 0.597207293912591 Functional Gain - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41268854 chr19:41268853 synonymous SNV . 0 20 hm7G_associated_SNPs_13710 0 0 1 0 1 SNRPA chr19:41268806 3'AG 41268806 Downstream 48bp 13168 chr4 110890155 110890155 1 + G T UCEC 110890156 + 110890136 110890176 41 GCCCATACAGCCCTGAAGTGGATAGAGAGAGCTAATATGGA GCCCATACAGCCCTGAAGTTGATAGAGAGAGCTAATATGGA < 41bp 0.510310954069062 0.808904411634167 NA NA prediction 0.59718691513021 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110890156 chr4:110890155 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13711 0 0 0 0 1 EGF chr4:110890127 3'AG 110890127 Downstream 29bp 13169 chr15 76165893 76165893 1 + G T LGG 76165894 + 76165874 76165914 41 AAAATTAGGAAGACTCAAAGGCAAGACCATTTAAATGTAAG AAAATTAGGAAGACTCAAATGCAAGACCATTTAAATGTAAG < 41bp 0.506181597928094 0.804765055794846 NA NA prediction 0.597166915733504 Functional Gain - UBE2Q2 ENSG00000140367 CDS Human protein_coding chr15:76165894 chr15:76165893 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_13712 0 0 1 0 1 UBE2Q2 chr15:76165909 5'GT 76165909 Upstream 17bp 13170 chr1 19653095 19653095 1 + G T STAD 19653096 + 19653076 19653116 41 GTGTTGTACCTGCTTTCCCGGCTGCCTCAGATCCGCACCAA GTGTTGTACCTGCTTTCCCTGCTGCCTCAGATCCGCACCAA < 41bp 0.53924652711504 0.837826611001558 NA NA prediction 0.597160167773036 Functional Gain - PQLC2 ENSG00000040487 CDS Human protein_coding chr1:19653096 chr1:19653095 nonsynonymous SNV 0.890 5 20 hm7G_associated_SNPs_13713 0 0 1 0 2 PQLC2 chr1:19653025 3'AG 19653025 Downstream 71bp 13171 chr1 19653095 19653095 1 + G T STAD 19653096 + 19653076 19653116 41 GTGTTGTACCTGCTTTCCCGGCTGCCTCAGATCCGCACCAA GTGTTGTACCTGCTTTCCCTGCTGCCTCAGATCCGCACCAA < 41bp 0.53924652711504 0.837826611001558 NA NA prediction 0.597160167773036 Functional Gain - PQLC2 ENSG00000040487 CDS Human protein_coding chr1:19653096 chr1:19653095 nonsynonymous SNV 0.890 5 20 hm7G_associated_SNPs_13713 0 0 1 0 2 PQLC2 chr1:19653117 5'GT 19653117 Upstream 23bp 13172 chr4 111464006 111464006 1 + G T LUSC 111464007 + 111463987 111464027 41 AATTATGAAGTAGCAACTTGGGACTCGATAGCTACAGCGCT AATTATGAAGTAGCAACTTTGGACTCGATAGCTACAGCGCT < 41bp 0.503052878512975 0.801614742528917 NA NA prediction 0.597123728031885 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111464007 chr4:111464006 nonsynonymous SNV 0.027 4 20 hm7G_associated_SNPs_13714 0 0 1 0 2 ENPEP chr4:111463907 3'AG 111463907 Downstream 100bp 13173 chr4 111464006 111464006 1 + G T LUSC 111464007 + 111463987 111464027 41 AATTATGAAGTAGCAACTTGGGACTCGATAGCTACAGCGCT AATTATGAAGTAGCAACTTTGGACTCGATAGCTACAGCGCT < 41bp 0.503052878512975 0.801614742528917 NA NA prediction 0.597123728031885 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111464007 chr4:111464006 nonsynonymous SNV 0.027 4 20 hm7G_associated_SNPs_13714 0 0 1 0 2 ENPEP chr4:111464043 5'GT 111464043 Upstream 38bp 13174 chr11 34144128 34144128 1 + G T LUAD 34144129 + 34144109 34144149 41 GATTGGCGATTGCTGGGGCGGTGGCATTTGGGTAAGGGGAT GATTGGCGATTGCTGGGGCTGTGGCATTTGGGTAAGGGGAT < 41bp 0.519779647716914 0.81833548245882 NA NA prediction 0.597111669483812 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34144129 chr11:34144128 synonymous SNV . 0 20 hm7G_associated_SNPs_13715 0 0 1 0 1 NAT10 chr11:34144139 5'GT 34144139 Upstream 12bp 13175 chr5 79354584 79354584 1 + G T UCEC 79354585 + 79354565 79354605 41 ACAATTAAACCAACTCCTGGGAGAGGTGAAGGACCTTCTGA ACAATTAAACCAACTCCTGTGAGAGGTGAAGGACCTTCTGA < 41bp 0.49324040757175 0.798531782159096 NA NA prediction 0.597063564318191 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79354585 chr5:79354584 stopgain 0.996 1 20 hm7G_associated_SNPs_13716 0 0 0 0 2 THBS4 chr5:79354531 3'AG 79354531 Downstream 54bp 13176 chr5 79354584 79354584 1 + G T UCEC 79354585 + 79354565 79354605 41 ACAATTAAACCAACTCCTGGGAGAGGTGAAGGACCTTCTGA ACAATTAAACCAACTCCTGTGAGAGGTGAAGGACCTTCTGA < 41bp 0.49324040757175 0.798531782159096 NA NA prediction 0.597063564318191 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79354585 chr5:79354584 stopgain 0.996 1 20 hm7G_associated_SNPs_13716 0 0 0 0 2 THBS4 chr5:79354613 5'GT 79354613 Upstream 30bp 13177 chrX 18593556 18593556 1 + G T UCEC 18593557 + 18593537 18593577 41 AAAACATTGTGGAGTTGAAGGAAGCATTTCGTCGGAGGGGA AAAACATTGTGGAGTTGAATGAAGCATTTCGTCGGAGGGGA < 41bp 0.517864393337376 0.8163958862854 NA NA prediction 0.597062985896048 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18593557 chrX:18593556 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13717 0 0 0 0 2 CDKL5 chrX:18593474 3'AG 18593474 Downstream 83bp 13178 chrX 18593556 18593556 1 + G T UCEC 18593557 + 18593537 18593577 41 AAAACATTGTGGAGTTGAAGGAAGCATTTCGTCGGAGGGGA AAAACATTGTGGAGTTGAATGAAGCATTTCGTCGGAGGGGA < 41bp 0.517864393337376 0.8163958862854 NA NA prediction 0.597062985896048 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18593557 chrX:18593556 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13717 0 0 0 0 2 CDKL5 chrX:18593610 5'GT 18593610 Upstream 55bp 13179 chr6 25606378 25606378 1 + G T UCEC 25606379 + 25606359 25606399 41 AGAACCCAAAGCGGAAGCAGGCTCCAGGTCTCGGAGCTCAT AGAACCCAAAGCGGAAGCATGCTCCAGGTCTCGGAGCTCAT < 41bp 0.51869945146581 0.81721511425048 NA NA prediction 0.597031325569339 Functional Gain - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25606379 chr6:25606378 nonsynonymous SNV 0.573 1 20 hm7G_associated_SNPs_13718 0 0 0 0 2 CARMIL1 chr6:25606289 3'AG 25606289 Downstream 90bp 13180 chr6 25606378 25606378 1 + G T UCEC 25606379 + 25606359 25606399 41 AGAACCCAAAGCGGAAGCAGGCTCCAGGTCTCGGAGCTCAT AGAACCCAAAGCGGAAGCATGCTCCAGGTCTCGGAGCTCAT < 41bp 0.51869945146581 0.81721511425048 NA NA prediction 0.597031325569339 Functional Gain - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25606379 chr6:25606378 nonsynonymous SNV 0.573 1 20 hm7G_associated_SNPs_13718 0 0 0 0 2 CARMIL1 chr6:25606307 3'AG 25606307 Downstream 72bp 13181 chr6 33173932 33173932 1 + G T COAD 33173933 + 33173913 33173953 41 TACTGAAATGATCCCGATGGGACACTTGGGGGACCCTGAGG TACTGAAATGATCCCGATGTGACACTTGGGGGACCCTGAGG < 41bp 0.529599843485243 0.828112956901473 NA NA prediction 0.597026226832459 Functional Gain - HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33173933 chr6:33173932 stopgain 1.000 1 20 hm7G_associated_SNPs_13719 0 0 1 0 1 HSD17B8 chr6:33173911 3'AG 33173911 Downstream 22bp 13182 chr15 72637881 72637881 1 - C A LUAD 72637880 - 72637860 72637900 41 TTCCTCCAGGCCCAGAGCAGGGGCTGTTGCCGAAAGGCTGT TTCCTCCAGGCCCAGAGCATGGGCTGTTGCCGAAAGGCTGT < 41bp 0.52896450690341 0.82747077329235 NA NA prediction 0.59701253277788 Functional Gain - HEXA ENSG00000213614 CDS Human protein_coding chr15:72637880 chr15:72637881 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_13720 0 0 1 0 2 HEXA chr15:72637787 5'GT 72637787 Upstream 95bp 13183 chr15 72637881 72637881 1 - C A LUAD 72637880 - 72637860 72637900 41 TTCCTCCAGGCCCAGAGCAGGGGCTGTTGCCGAAAGGCTGT TTCCTCCAGGCCCAGAGCATGGGCTGTTGCCGAAAGGCTGT < 41bp 0.52896450690341 0.82747077329235 NA NA prediction 0.59701253277788 Functional Gain - HEXA ENSG00000213614 CDS Human protein_coding chr15:72637880 chr15:72637881 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_13720 0 0 1 0 2 HEXA chr15:72637891 3'AG 72637891 Downstream 11bp 13184 chrX 48460174 48460174 1 + G T LUAD 48460175 + 48460155 48460195 41 GTGCATTCTCCCCACAGGTGGGGAACGCCAAGCACAACGTG GTGCATTCTCCCCACAGGTTGGGAACGCCAAGCACAACGTG < 41bp 0.54059567047931 0.839098295056211 NA NA prediction 0.597005249153801 Functional Gain - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48460175 chrX:48460174 synonymous SNV . 0 20 hm7G_associated_SNPs_13721 0 0 1 0 1 WDR13 chrX:48460172 3'AG 48460172 Downstream 3bp 13185 chr18 56411623 56411623 1 + G T UCEC 56411624 + 56411604 56411644 41 TGGTGTTCAGATTCAATTAGGATTTGCAGCTGAGTTTTCCA TGGTGTTCAGATTCAATTATGATTTGCAGCTGAGTTTTCCA < 41bp 0.502294515419604 0.800791784997317 NA NA prediction 0.596994539155426 Functional Gain - MALT1 ENSG00000172175 CDS Human protein_coding chr18:56411624 chr18:56411623 stopgain 1.000 1 20 hm7G_associated_SNPs_13722 0 0 1 0 1 MALT1 chr18:56411570 3'AG 56411570 Downstream 54bp 13186 chr14 95085743 95085743 1 + G T UCEC 95085744 + 95085724 95085764 41 CTGATCAAGACAAGATGGAGGAAGTGGAAGCCATGCTGCTC CTGATCAAGACAAGATGGATGAAGTGGAAGCCATGCTGCTC < 41bp 0.487380047785637 0.798487664730169 NA NA prediction 0.596975329460338 Functional Gain - SERPINA3 ENSG00000196136 CDS Human protein_coding chr14:95085744 chr14:95085743 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_13725 0 0 1 0 1 SERPINA3 chr14:95085805 5'GT 95085805 Upstream 63bp 13187 chr20 60737933 60737933 1 + G T UCEC 60737934 + 60737914 60737954 41 CGTCCCCATGCAGGGGCAAGGCACCATCGGCAACTACGTGT CGTCCCCATGCAGGGGCAATGCACCATCGGCAACTACGTGT < 41bp 0.468528878598209 0.798470798669576 NA NA prediction 0.596941597339152 Functional Gain - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60737934 chr20:60737933 nonsynonymous SNV 0.887 3 20 hm7G_associated_SNPs_13726 0 0 1 1 1 SS18L1 chr20:60737987 5'GT 60737987 Upstream 55bp 13188 chr3 15064743 15064743 1 + G T BRCA 15064744 + 15064724 15064764 41 AAGCCCTTCGATGTGCAACGGGAGAAACCAAGCAATTGTGC AAGCCCTTCGATGTGCAACTGGAGAAACCAAGCAATTGTGC < 41bp 0.521002741519086 0.81945133257671 NA NA prediction 0.596897182115248 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15064744 chr3:15064743 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13729 0 0 1 0 1 NR2C2 chr3:15064707 3'AG 15064707 Downstream 37bp 13189 chr22 37329941 37329941 1 + G T LUAD 37329942 + 37329922 37329962 41 GCCCTGGAGCCCTCCACCAGGTACTGGGCCAGGGTGAGGGT GCCCTGGAGCCCTCCACCATGTACTGGGCCAGGGTGAGGGT < 41bp 0.47331204625896 0.798441098942418 NA NA prediction 0.596882197884836 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329942 chr22:37329941 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_13730 0 0 0 0 2 CSF2RB chr22:37329874 3'AG 37329874 Downstream 68bp 13190 chr22 37329941 37329941 1 + G T LUAD 37329942 + 37329922 37329962 41 GCCCTGGAGCCCTCCACCAGGTACTGGGCCAGGGTGAGGGT GCCCTGGAGCCCTCCACCATGTACTGGGCCAGGGTGAGGGT < 41bp 0.47331204625896 0.798441098942418 NA NA prediction 0.596882197884836 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37329942 chr22:37329941 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_13730 0 0 0 0 2 CSF2RB chr22:37330036 5'GT 37330036 Upstream 96bp 13191 chr6 35715160 35715160 1 + G T LUAD 35715161 + 35715141 35715181 41 TGCATCCACAGCTGCGACGGGTGATGCCTGCCTTGATGGAG TGCATCCACAGCTGCGACGTGTGATGCCTGCCTTGATGGAG < 41bp 0.488040950689663 0.798438690818677 NA NA prediction 0.596877381637354 Functional Gain - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715161 chr6:35715160 synonymous SNV . 0 20 hm7G_associated_SNPs_13731 0 0 0 0 1 ARMC12 chr6:35715211 5'GT 35715211 Upstream 52bp 13192 chr14 61263021 61263021 1 + G T LUSC 61263022 + 61263002 61263042 41 CTCAGAAAGAGCAACTTCAGGGTACAACTCTTTGAAGATCC CTCAGAAAGAGCAACTTCATGGTACAACTCTTTGAAGATCC < 41bp 0.490562552695625 0.79843614169245 NA NA prediction 0.5968722833849 Functional Gain - MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61263022 chr14:61263021 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13732 0 0 1 0 2 MNAT1 chr14:61262935 3'AG 61262935 Downstream 87bp 13193 chr14 61263021 61263021 1 + G T LUSC 61263022 + 61263002 61263042 41 CTCAGAAAGAGCAACTTCAGGGTACAACTCTTTGAAGATCC CTCAGAAAGAGCAACTTCATGGTACAACTCTTTGAAGATCC < 41bp 0.490562552695625 0.79843614169245 NA NA prediction 0.5968722833849 Functional Gain - MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61263022 chr14:61263021 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13732 0 0 1 0 2 MNAT1 chr14:61263087 5'GT 61263087 Upstream 67bp 13194 chr14 78392162 78392162 1 + G T UCEC 78392163 + 78392143 78392183 41 CTCTGGCAGTCTCTGATCTGGACTGACATGAAGAGAGTGAA CTCTGGCAGTCTCTGATCTTGACTGACATGAAGAGAGTGAA < 41bp 0.540488174612952 0.838920338652864 NA NA prediction 0.596864328079824 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78392163 chr14:78392162 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_13733 0 0 0 0 1 ADCK1 chr14:78392107 3'AG 78392107 Downstream 56bp 13195 chr8 133850045 133850045 1 + G T LUSC 133850046 + 133850026 133850066 41 TACATCTGCTATATCTGCCGGGACCCACCAGGTAAGGCTTT TACATCTGCTATATCTGCCTGGACCCACCAGGTAAGGCTTT < 41bp 0.505024545653933 0.803453349740745 NA NA prediction 0.596857608173624 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133850046 chr8:133850045 nonsynonymous SNV 0.870 2 20 hm7G_associated_SNPs_13734 0 0 1 0 1 PHF20L1 chr8:133850056 5'GT 133850056 Upstream 12bp 13196 chr1 159799720 159799720 1 + G T THCA 159799721 + 159799701 159799741 41 TCGGGGGCTCGGTGCTGCTGGTGGCAGCGCGTCCCCCTGGC TCGGGGGCTCGGTGCTGCTTGTGGCAGCGCGTCCCCCTGGC < 41bp 0.479672020144177 0.798416019345032 NA NA prediction 0.596832038690063 Functional Gain - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159799721 chr1:159799720 synonymous SNV . 0 20 hm7G_associated_SNPs_13735 0 0 0 0 1 SLAMF8 chr1:159799656 3'AG 159799656 Downstream 65bp 13197 chr11 64938909 64938909 1 + G T LUAD 64938910 + 64938890 64938930 41 GCTGCAGCCGGCAAGGTGGGGGCAATGGGTTCCTCCGTTTT GCTGCAGCCGGCAAGGTGGTGGCAATGGGTTCCTCCGTTTT < 41bp 0.480203825615744 0.798406972277293 NA NA prediction 0.596813944554586 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64938910 chr11:64938909 synonymous SNV . 0 20 hm7G_associated_SNPs_13736 0 0 1 0 1 SPDYC chr11:64938970 5'GT 64938970 Upstream 62bp 13198 chr14 93685055 93685055 1 + G T LIHC 93685056 + 93685036 93685076 41 GAACAGTGAACCATGTGCCGGCTCTAGTTCTGAATCTGATC GAACAGTGAACCATGTGCCTGCTCTAGTTCTGAATCTGATC < 41bp 0.479378276377415 0.798396480809423 NA NA prediction 0.596792961618846 Functional Gain - UBR7 ENSG00000012963 CDS Human protein_coding chr14:93685056 chr14:93685055 nonsynonymous SNV 0.812 2 20 hm7G_associated_SNPs_13737 0 0 1 0 1 UBR7 chr14:93685081 5'GT 93685081 Upstream 27bp 13199 chr14 100331947 100331947 1 + G T HNSC 100331948 + 100331928 100331968 41 TCTCTACCATCCCCCTCCGGGGTCAGGAAAGAAACTGCTGT TCTCTACCATCCCCCTCCGTGGTCAGGAAAGAAACTGCTGT < 41bp 0.47460972634292 0.798389045821059 NA NA prediction 0.596778091642119 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100331948 chr14:100331947 nonsynonymous SNV 0.235 3 20 hm7G_associated_SNPs_13738 0 0 0 0 2 EML1 chr14:100331851 3'AG 100331851 Downstream 97bp 13200 chr14 100331947 100331947 1 + G T HNSC 100331948 + 100331928 100331968 41 TCTCTACCATCCCCCTCCGGGGTCAGGAAAGAAACTGCTGT TCTCTACCATCCCCCTCCGTGGTCAGGAAAGAAACTGCTGT < 41bp 0.47460972634292 0.798389045821059 NA NA prediction 0.596778091642119 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100331948 chr14:100331947 nonsynonymous SNV 0.235 3 20 hm7G_associated_SNPs_13738 0 0 0 0 2 EML1 chr14:100331983 5'GT 100331983 Upstream 37bp 13201 chr1 11733385 11733385 1 + G T OV 11733386 + 11733366 11733406 41 ACCAACTCAAAGTGCAGCTGGCCTCGGCTGACTACTTCGTG ACCAACTCAAAGTGCAGCTTGCCTCGGCTGACTACTTCGTG < 41bp 0.515597532923406 0.813981016275367 NA NA prediction 0.596766966703922 Functional Gain - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11733386 chr1:11733385 synonymous SNV . 0 20 hm7G_associated_SNPs_13739 0 0 1 0 2 FBXO6 chr1:11733334 3'AG 11733334 Downstream 52bp 13202 chr1 11733385 11733385 1 + G T OV 11733386 + 11733366 11733406 41 ACCAACTCAAAGTGCAGCTGGCCTCGGCTGACTACTTCGTG ACCAACTCAAAGTGCAGCTTGCCTCGGCTGACTACTTCGTG < 41bp 0.515597532923406 0.813981016275367 NA NA prediction 0.596766966703922 Functional Gain - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11733386 chr1:11733385 synonymous SNV . 0 20 hm7G_associated_SNPs_13739 0 0 1 0 2 FBXO6 chr1:11733469 5'GT 11733469 Upstream 85bp 13203 chr16 81293367 81293367 1 + G T LAML 81293368 + 81293348 81293388 41 GATTGTGGTGTCTGAGTTTGGAACAATGGCCTATCCGGACC GATTGTGGTGTCTGAGTTTTGAACAATGGCCTATCCGGACC < 41bp 0.524530500089202 0.822905865352202 NA NA prediction 0.596750730526 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81293368 chr16:81293367 stopgain 0.952 1 20 hm7G_associated_SNPs_13740 0 0 0 0 2 BCO1 chr16:81293281 3'AG 81293281 Downstream 87bp 13204 chr16 81293367 81293367 1 + G T LAML 81293368 + 81293348 81293388 41 GATTGTGGTGTCTGAGTTTGGAACAATGGCCTATCCGGACC GATTGTGGTGTCTGAGTTTTGAACAATGGCCTATCCGGACC < 41bp 0.524530500089202 0.822905865352202 NA NA prediction 0.596750730526 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81293368 chr16:81293367 stopgain 0.952 1 20 hm7G_associated_SNPs_13740 0 0 0 0 2 BCO1 chr16:81293410 5'GT 81293410 Upstream 44bp 13205 chr12 50222491 50222491 1 + G T rs549834063 50222492 + 50222472 50222512 41 CGCCGGGCTGGGCCGAGCGGGGGTGGAATGAGGGCGTCTAG CGCCGGGCTGGGCCGAGCGTGGGTGGAATGAGGGCGTCTAG < 41bp 0.503261389965695 0.801626384771512 NA NA prediction 0.596729989611633 Functional Gain - BCDIN3D-AS1 ENSG00000258057 ncRNA_exonic Human antisense chr12:50222492 chr12:50222491 . . 0 20 hm7G_associated_SNPs_13741 0 0 0 0 2 BCDIN3D-AS1 chr12:50222527 5'GT 50222527 Upstream 37bp 13206 chr12 50222491 50222491 1 + G T rs549834063 50222492 + 50222472 50222512 41 CGCCGGGCTGGGCCGAGCGGGGGTGGAATGAGGGCGTCTAG CGCCGGGCTGGGCCGAGCGTGGGTGGAATGAGGGCGTCTAG < 41bp 0.503261389965695 0.801626384771512 NA NA prediction 0.596729989611633 Functional Gain - BCDIN3D-AS1 ENSG00000258057 ncRNA_exonic Human antisense chr12:50222492 chr12:50222491 . . 0 20 hm7G_associated_SNPs_13741 0 0 0 0 2 BCDIN3D-AS1 chr12:50222531 5'GT 50222531 Upstream 41bp 13207 chr12 53676113 53676113 1 + G T UCEC 53676114 + 53676094 53676134 41 CCCTCCAGAAGTCCTCCAAGGCTTGGTACTTGCTGCGTGTC CCCTCCAGAAGTCCTCCAATGCTTGGTACTTGCTGCGTGTC < 41bp 0.461908332823053 0.798364168794065 NA NA prediction 0.596728337588131 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53676114 chr12:53676113 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13742 0 0 1 0 1 ESPL1 chr12:53676048 3'AG 53676048 Downstream 66bp 13208 chr8 145694944 145694944 1 + G T rs200068804 145694945 + 145694925 145694965 41 GAGTGTGGAGCCTGGCCCAGGGGGCACCGTCACCACCTGCT GAGTGTGGAGCCTGGCCCATGGGGCACCGTCACCACCTGCT < 41bp 0.463937424957984 0.798363297875846 NA NA prediction 0.596726595751693 Functional Gain - KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145694945 chr8:145694944 nonsynonymous SNV 0.473 3 20 hm7G_associated_SNPs_13743 0 0 1 0 2 KIFC2 chr8:145694873 3'AG 145694873 Downstream 72bp 13209 chr8 145694944 145694944 1 + G T rs200068804 145694945 + 145694925 145694965 41 GAGTGTGGAGCCTGGCCCAGGGGGCACCGTCACCACCTGCT GAGTGTGGAGCCTGGCCCATGGGGCACCGTCACCACCTGCT < 41bp 0.463937424957984 0.798363297875846 NA NA prediction 0.596726595751693 Functional Gain - KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145694945 chr8:145694944 nonsynonymous SNV 0.473 3 20 hm7G_associated_SNPs_13743 0 0 1 0 2 KIFC2 chr8:145695030 5'GT 145695030 Upstream 87bp 13210 chr12 56490844 56490844 1 + G T SARC 56490845 + 56490825 56490865 41 TTAGCATATGCTGGCCATTGGCAGCCTGGACCATGCCCACA TTAGCATATGCTGGCCATTTGCAGCCTGGACCATGCCCACA < 41bp 0.526646473255128 0.825004112590874 NA NA prediction 0.596715278671493 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56490845 chr12:56490844 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13744 0 0 1 0 1 ERBB3 chr12:56490829 3'AG 56490829 Downstream 16bp 13211 chr6 161528946 161528946 1 + G T COAD 161528947 + 161528927 161528967 41 ACAGGAGAAGGCCAGTATGGGAAGGTGTACACCTGCATCAG ACAGGAGAAGGCCAGTATGTGAAGGTGTACACCTGCATCAG < 41bp 0.486987856664684 0.798328006201997 NA NA prediction 0.596656012403994 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161528947 chr6:161528946 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_13746 0 0 1 0 2 MAP3K4 chr6:161528931 3'AG 161528931 Downstream 16bp 13212 chr6 161528946 161528946 1 + G T COAD 161528947 + 161528927 161528967 41 ACAGGAGAAGGCCAGTATGGGAAGGTGTACACCTGCATCAG ACAGGAGAAGGCCAGTATGTGAAGGTGTACACCTGCATCAG < 41bp 0.486987856664684 0.798328006201997 NA NA prediction 0.596656012403994 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161528947 chr6:161528946 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_13746 0 0 1 0 2 MAP3K4 chr6:161529001 5'GT 161529001 Upstream 56bp 13213 chr21 46603327 46603327 1 + G T LUSC 46603328 + 46603308 46603348 41 CAGAAATCAGAGCGAGGGGGGTTTAGGCTGAAGGAGAATGT CAGAAATCAGAGCGAGGGGTGTTTAGGCTGAAGGAGAATGT < 41bp 0.501708042170871 0.800028000472703 NA NA prediction 0.596639916603665 Functional Gain - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46603328 chr21:46603327 nonsynonymous SNV 0.785 4 20 hm7G_associated_SNPs_13748 0 0 0 0 2 ADARB1 chr21:46603277 3'AG 46603277 Downstream 51bp 13214 chr21 46603327 46603327 1 + G T LUSC 46603328 + 46603308 46603348 41 CAGAAATCAGAGCGAGGGGGGTTTAGGCTGAAGGAGAATGT CAGAAATCAGAGCGAGGGGTGTTTAGGCTGAAGGAGAATGT < 41bp 0.501708042170871 0.800028000472703 NA NA prediction 0.596639916603665 Functional Gain - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46603328 chr21:46603327 nonsynonymous SNV 0.785 4 20 hm7G_associated_SNPs_13748 0 0 0 0 2 ADARB1 chr21:46603425 5'GT 46603425 Upstream 99bp 13215 chr3 130307991 130307991 1 + G T LUAD 130307992 + 130307972 130308012 41 CAAGTGCATTGGAGGAGATGGCACAATGGGAGATCCTGGAC CAAGTGCATTGGAGGAGATTGCACAATGGGAGATCCTGGAC < 41bp 0.532180398406916 0.83049170317096 NA NA prediction 0.596622609528088 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130307992 chr3:130307991 nonsynonymous SNV 0.238 5 20 hm7G_associated_SNPs_13750 0 0 0 0 1 COL6A6 chr3:130307934 3'AG 130307934 Downstream 58bp 13216 chr16 89592837 89592837 1 + G T STAD 89592838 + 89592818 89592858 41 AATATCGAGGCCAAGGACAGGATCCCAGTTTCCTACAAGCG AATATCGAGGCCAAGGACATGATCCCAGTTTCCTACAAGCG < 41bp 0.530084131954352 0.828393311843858 NA NA prediction 0.596618359779012 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89592838 chr16:89592837 nonsynonymous SNV 0.699 4 20 hm7G_associated_SNPs_13751 0 0 1 0 1 SPG7 chr16:89592876 5'GT 89592876 Upstream 40bp 13217 chr9 71992648 71992648 1 + G T CESC 71992649 + 71992629 71992669 41 TTTTACTCGTGCACACCCCGGATGAACCGCAGGTATCGTTC TTTTACTCGTGCACACCCCTGATGAACCGCAGGTATCGTTC < 41bp 0.537841935806189 0.836148270800594 NA NA prediction 0.59661266998881 Functional Gain - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:71992649 chr9:71992648 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13752 0 0 0 0 1 FAM189A2 chr9:71992660 5'GT 71992660 Upstream 13bp 13218 chr3 121647354 121647354 1 + G T GBM 121647355 + 121647335 121647375 41 AGGTGAAGGTGACAGTGGTGGGAAATGAAAACAATTCTCTG AGGTGAAGGTGACAGTGGTTGGAAATGAAAACAATTCTCTG < 41bp 0.521011731538508 0.819300431686617 NA NA prediction 0.596577400296217 Functional Gain - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121647355 chr3:121647354 synonymous SNV . 0 20 hm7G_associated_SNPs_13754 0 0 0 0 2 SLC15A2 chr3:121647268 3'AG 121647268 Downstream 87bp 13219 chr3 121647354 121647354 1 + G T GBM 121647355 + 121647335 121647375 41 AGGTGAAGGTGACAGTGGTGGGAAATGAAAACAATTCTCTG AGGTGAAGGTGACAGTGGTTGGAAATGAAAACAATTCTCTG < 41bp 0.521011731538508 0.819300431686617 NA NA prediction 0.596577400296217 Functional Gain - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121647355 chr3:121647354 synonymous SNV . 0 20 hm7G_associated_SNPs_13754 0 0 0 0 2 SLC15A2 chr3:121647402 5'GT 121647402 Upstream 49bp 13220 chr11 43772487 43772487 1 + G T LUSC 43772488 + 43772468 43772508 41 AGGTAGTACTGATGGAATTGGAAAATCATATGCAGAAGAGG AGGTAGTACTGATGGAATTTGAAAATCATATGCAGAAGAGG < 41bp 0.500078084228684 0.798339100131478 NA NA prediction 0.596522031805589 Functional Gain - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43772488 chr11:43772487 stopgain 1.000 1 20 hm7G_associated_SNPs_13756 0 0 1 3 2 HSD17B12 chr11:43772461 3'AG 43772461 Downstream 27bp 13221 chr11 43772487 43772487 1 + G T LUSC 43772488 + 43772468 43772508 41 AGGTAGTACTGATGGAATTGGAAAATCATATGCAGAAGAGG AGGTAGTACTGATGGAATTTGAAAATCATATGCAGAAGAGG < 41bp 0.500078084228684 0.798339100131478 NA NA prediction 0.596522031805589 Functional Gain - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43772488 chr11:43772487 stopgain 1.000 1 20 hm7G_associated_SNPs_13756 0 0 1 3 2 HSD17B12 chr11:43772507 5'GT 43772507 Upstream 21bp 13222 chr19 1220706 1220706 1 + G T LUAD 1220707 + 1220687 1220727 41 GGTGGACATCTGGTCGGCTGGGGTCACCCTGTAAGTGCCCC GGTGGACATCTGGTCGGCTTGGGTCACCCTGTAAGTGCCCC < 41bp 0.469256071528047 0.798236271720903 NA NA prediction 0.596472543441806 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220707 chr19:1220706 nonsynonymous SNV 0.936 5 20 hm7G_associated_SNPs_13758 1 0 1 0 1 STK11 chr19:1220716 5'GT 1220716 Upstream 11bp 13223 chr1 206653406 206653406 1 + G T READ 206653407 + 206653387 206653427 41 AGGCCCTGCGGCTGGCACGGGCCCTGCTGGATGGGCAGGAG AGGCCCTGCGGCTGGCACGTGCCCTGCTGGATGGGCAGGAG < 41bp 0.547929434655283 0.846164237668968 NA NA prediction 0.596469606027371 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653407 chr1:206653406 synonymous SNV . 0 20 hm7G_associated_SNPs_13759 0 0 0 0 2 IKBKE chr1:206653365 3'AG 206653365 Downstream 42bp 13224 chr1 206653406 206653406 1 + G T READ 206653407 + 206653387 206653427 41 AGGCCCTGCGGCTGGCACGGGCCCTGCTGGATGGGCAGGAG AGGCCCTGCGGCTGGCACGTGCCCTGCTGGATGGGCAGGAG < 41bp 0.547929434655283 0.846164237668968 NA NA prediction 0.596469606027371 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653407 chr1:206653406 synonymous SNV . 0 20 hm7G_associated_SNPs_13759 0 0 0 0 2 IKBKE chr1:206653456 5'GT 206653456 Upstream 51bp 13225 chr7 128588283 128588283 1 + G T COAD 128588284 + 128588264 128588304 41 AGCTCATCCTGTTCCAAAAGGGCCAGACCAACACCCCACCA AGCTCATCCTGTTCCAAAATGGCCAGACCAACACCCCACCA < 41bp 0.515870113065728 0.814053378817589 NA NA prediction 0.596366531503722 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128588284 chr7:128588283 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13763 0 0 0 0 2 IRF5 chr7:128588264 3'AG 128588264 Downstream 20bp 13226 chr7 128588283 128588283 1 + G T COAD 128588284 + 128588264 128588304 41 AGCTCATCCTGTTCCAAAAGGGCCAGACCAACACCCCACCA AGCTCATCCTGTTCCAAAATGGCCAGACCAACACCCCACCA < 41bp 0.515870113065728 0.814053378817589 NA NA prediction 0.596366531503722 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128588284 chr7:128588283 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13763 0 0 0 0 2 IRF5 chr7:128588382 5'GT 128588382 Upstream 100bp 13227 chr2 238785948 238785948 1 + G T UCEC 238785949 + 238785929 238785969 41 TCTGCCTCACCCAGTTCCAGGTAGACATGGAGGCCGTCGGG TCTGCCTCACCCAGTTCCATGTAGACATGGAGGCCGTCGGG < 41bp 0.524069350644205 0.822251013170715 NA NA prediction 0.59636332505302 Functional Gain - RAMP1 ENSG00000132329 CDS Human protein_coding chr2:238785949 chr2:238785948 nonsynonymous SNV 0.014 1 20 hm7G_associated_SNPs_13765 0 0 0 0 2 RAMP1 chr2:238785866 3'AG 238785866 Downstream 83bp 13228 chr2 238785948 238785948 1 + G T UCEC 238785949 + 238785929 238785969 41 TCTGCCTCACCCAGTTCCAGGTAGACATGGAGGCCGTCGGG TCTGCCTCACCCAGTTCCATGTAGACATGGAGGCCGTCGGG < 41bp 0.524069350644205 0.822251013170715 NA NA prediction 0.59636332505302 Functional Gain - RAMP1 ENSG00000132329 CDS Human protein_coding chr2:238785949 chr2:238785948 nonsynonymous SNV 0.014 1 20 hm7G_associated_SNPs_13765 0 0 0 0 2 RAMP1 chr2:238786004 5'GT 238786004 Upstream 57bp 13229 chr1 150064438 150064438 1 + G T READ 150064439 + 150064419 150064459 41 TGGTGGTAAACGAGTCAGAGGAAGTGACCTCTTCAGCCCCA TGGTGGTAAACGAGTCAGATGAAGTGACCTCTTCAGCCCCA < 41bp 0.527340047386955 0.825516083399576 NA NA prediction 0.596352072025242 Functional Gain - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150064439 chr1:150064438 stopgain 1.000 1 20 hm7G_associated_SNPs_13766 0 0 1 1 2 VPS45 chr1:150064396 3'AG 150064396 Downstream 43bp 13230 chr1 150064438 150064438 1 + G T READ 150064439 + 150064419 150064459 41 TGGTGGTAAACGAGTCAGAGGAAGTGACCTCTTCAGCCCCA TGGTGGTAAACGAGTCAGATGAAGTGACCTCTTCAGCCCCA < 41bp 0.527340047386955 0.825516083399576 NA NA prediction 0.596352072025242 Functional Gain - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150064439 chr1:150064438 stopgain 1.000 1 20 hm7G_associated_SNPs_13766 0 0 1 1 2 VPS45 chr1:150064503 5'GT 150064503 Upstream 66bp 13231 chr21 42817461 42817461 1 + G T LUSC 42817462 + 42817442 42817482 41 AGTATGGTGTCGACATACCGGAAGACGAAAATGAAAAAATG AGTATGGTGTCGACATACCTGAAGACGAAAATGAAAAAATG < 41bp 0.486308934941633 0.79815421604676 NA NA prediction 0.59630843209352 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42817462 chr21:42817461 synonymous SNV . 0 20 hm7G_associated_SNPs_13768 0 0 0 0 2 MX1 chr21:42817375 3'AG 42817375 Downstream 87bp 13232 chr21 42817461 42817461 1 + G T LUSC 42817462 + 42817442 42817482 41 AGTATGGTGTCGACATACCGGAAGACGAAAATGAAAAAATG AGTATGGTGTCGACATACCTGAAGACGAAAATGAAAAAATG < 41bp 0.486308934941633 0.79815421604676 NA NA prediction 0.59630843209352 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42817462 chr21:42817461 synonymous SNV . 0 20 hm7G_associated_SNPs_13768 0 0 0 0 2 MX1 chr21:42817497 5'GT 42817497 Upstream 37bp 13233 chr1 17682574 17682574 1 + G T LUAD 17682575 + 17682555 17682595 41 ATTCTGACTGGCTGTCCGTGGGCCACGTGGACGAGTTCCTG ATTCTGACTGGCTGTCCGTTGGCCACGTGGACGAGTTCCTG < 41bp 0.541503516223027 0.83964296807815 NA NA prediction 0.596278903710246 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17682575 chr1:17682574 synonymous SNV . 0 20 hm7G_associated_SNPs_13769 0 0 0 0 2 PADI4 chr1:17682478 3'AG 17682478 Downstream 97bp 13234 chr1 17682574 17682574 1 + G T LUAD 17682575 + 17682555 17682595 41 ATTCTGACTGGCTGTCCGTGGGCCACGTGGACGAGTTCCTG ATTCTGACTGGCTGTCCGTTGGCCACGTGGACGAGTTCCTG < 41bp 0.541503516223027 0.83964296807815 NA NA prediction 0.596278903710246 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17682575 chr1:17682574 synonymous SNV . 0 20 hm7G_associated_SNPs_13769 0 0 0 0 2 PADI4 chr1:17682622 5'GT 17682622 Upstream 49bp 13235 chr18 63430252 63430252 1 + G T LUAD 63430253 + 63430233 63430273 41 ATCAGTTCTTTGTGCTGGAGGAATACATGGGTTCAGACCCC ATCAGTTCTTTGTGCTGGATGAATACATGGGTTCAGACCCC < 41bp 0.490566676265035 0.798127876109067 NA NA prediction 0.596255752218134 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63430253 chr18:63430252 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13770 0 0 0 0 1 CDH7 chr18:63430288 5'GT 63430288 Upstream 37bp 13236 chr9 140109136 140109136 1 + G T COAD 140109137 + 140109117 140109157 41 TCTTCATGCTGCAGCCGCGGGAGCCAGGTGAGCCCAGCCTC TCTTCATGCTGCAGCCGCGTGAGCCAGGTGAGCCCAGCCTC < 41bp 0.474697008754715 0.798119674516249 NA NA prediction 0.596239349032497 Functional Gain - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140109137 chr9:140109136 synonymous SNV . 0 20 hm7G_associated_SNPs_13773 0 0 1 0 1 NDOR1 chr9:140109143 5'GT 140109143 Upstream 8bp 13237 chr18 28991326 28991326 1 + G T LUAD 28991327 + 28991307 28991347 41 GGAGCCTCAGGGGCCGCAAGGAAGAGGAGCTCTACCATGGG GGAGCCTCAGGGGCCGCAATGAAGAGGAGCTCTACCATGGG < 41bp 0.521414921061929 0.819521502168958 NA NA prediction 0.59621316221406 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28991327 chr18:28991326 nonsynonymous SNV 0.172 2 20 hm7G_associated_SNPs_13774 0 0 0 0 1 DSG4 chr18:28991411 5'GT 28991411 Upstream 86bp 13238 chr1 12251959 12251959 1 + G T BLCA 12251960 + 12251940 12251980 41 GCTGCGCAAGTGCCGCCCGGGCTTCGGCGTGGCCAGACCAG GCTGCGCAAGTGCCGCCCGTGCTTCGGCGTGGCCAGACCAG < 41bp 0.54343204247983 0.841523285495439 NA NA prediction 0.596182486031218 Functional Gain - TNFRSF1B ENSG00000028137 CDS Human protein_coding chr1:12251960 chr1:12251959 nonsynonymous SNV 0.201 5 20 hm7G_associated_SNPs_13776 0 0 0 0 1 TNFRSF1B chr1:12251980 5'GT 12251980 Upstream 22bp 13239 chr11 64023045 64023045 1 + G T LUAD 64023046 + 64023026 64023066 41 TTCTCAGCAGACAAGAAGCGGGTGGAGACTGCGCTGGAATC TTCTCAGCAGACAAGAAGCTGGTGGAGACTGCGCTGGAATC < 41bp 0.52883959131515 0.826924301589901 NA NA prediction 0.596169420549504 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64023046 chr11:64023045 nonsynonymous SNV 0.902 4 20 hm7G_associated_SNPs_13777 0 0 1 0 2 PLCB3 chr11:64023013 3'AG 64023013 Downstream 33bp 13240 chr11 64023045 64023045 1 + G T LUAD 64023046 + 64023026 64023066 41 TTCTCAGCAGACAAGAAGCGGGTGGAGACTGCGCTGGAATC TTCTCAGCAGACAAGAAGCTGGTGGAGACTGCGCTGGAATC < 41bp 0.52883959131515 0.826924301589901 NA NA prediction 0.596169420549504 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64023046 chr11:64023045 nonsynonymous SNV 0.902 4 20 hm7G_associated_SNPs_13777 0 0 1 0 2 PLCB3 chr11:64023088 5'GT 64023088 Upstream 44bp 13241 chr14 31539089 31539089 1 + G T LIHC 31539090 + 31539070 31539110 41 GATTTTAAGCTGATATATCGGCAGTATGCAGCTCTCTTCAT GATTTTAAGCTGATATATCTGCAGTATGCAGCTCTCTTCAT < 41bp 0.514016586134759 0.812081671258331 NA NA prediction 0.596130170247142 Functional Gain - AP4S1 ENSG00000100478 CDS Human protein_coding chr14:31539090 chr14:31539089 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13779 0 0 1 0 2 AP4S1 chr14:31539049 3'AG 31539049 Downstream 41bp 13242 chr14 31539089 31539089 1 + G T LIHC 31539090 + 31539070 31539110 41 GATTTTAAGCTGATATATCGGCAGTATGCAGCTCTCTTCAT GATTTTAAGCTGATATATCTGCAGTATGCAGCTCTCTTCAT < 41bp 0.514016586134759 0.812081671258331 NA NA prediction 0.596130170247142 Functional Gain - AP4S1 ENSG00000100478 CDS Human protein_coding chr14:31539090 chr14:31539089 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13779 0 0 1 0 2 AP4S1 chr14:31539135 5'GT 31539135 Upstream 47bp 13243 chr16 30666676 30666676 1 + G T UCEC 30666677 + 30666657 30666697 41 TGACCTTCTTGGCAGGTTGGGTTCAACCAAAGGGAAGGAGC TGACCTTCTTGGCAGGTTGTGTTCAACCAAAGGGAAGGAGC < 41bp 0.490565714574918 0.798064081967489 NA NA prediction 0.596128163934979 Functional Gain - PRR14 ENSG00000156858 CDS Human protein_coding chr16:30666677 chr16:30666676 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_13780 0 0 1 0 2 PRR14 chr16:30666672 3'AG 30666672 Downstream 5bp 13244 chr16 30666676 30666676 1 + G T UCEC 30666677 + 30666657 30666697 41 TGACCTTCTTGGCAGGTTGGGTTCAACCAAAGGGAAGGAGC TGACCTTCTTGGCAGGTTGTGTTCAACCAAAGGGAAGGAGC < 41bp 0.490565714574918 0.798064081967489 NA NA prediction 0.596128163934979 Functional Gain - PRR14 ENSG00000156858 CDS Human protein_coding chr16:30666677 chr16:30666676 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_13780 0 0 1 0 2 PRR14 chr16:30666741 5'GT 30666741 Upstream 66bp 13245 chr5 115327857 115327857 1 + G T ESCA 115327858 + 115327838 115327878 41 GTTTTGACAACCATGCAATGGAAAACTGGGGACTAATGATA GTTTTGACAACCATGCAATTGAAAACTGGGGACTAATGATA < 41bp 0.485770728023024 0.798061512590852 NA NA prediction 0.596123025181704 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115327858 chr5:115327857 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_13783 0 0 0 0 1 LVRN chr5:115327820 3'AG 115327820 Downstream 38bp 13246 chr8 75272520 75272520 1 + G T BLCA 75272521 + 75272501 75272541 41 CTGTGGACTCCATGATCCCGGCTTATGCAACTACAAGGATT CTGTGGACTCCATGATCCCTGCTTATGCAACTACAAGGATT < 41bp 0.514611085394553 0.812638274218304 NA NA prediction 0.596054377647502 Functional Gain - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75272521 chr8:75272520 synonymous SNV . 0 20 hm7G_associated_SNPs_13786 0 0 1 0 1 GDAP1 chr8:75272545 5'GT 75272545 Upstream 26bp 13247 chr4 59421 59421 1 + G T LUSC 59422 + 59402 59442 41 TGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTC TGTATAGAGATGTGATGTTTGAGAACTACAGGAACCTGGTC < 41bp 0.491113663197383 0.798025984357781 NA NA prediction 0.596051968715563 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:59422 chr4:59421 nonsynonymous SNV 0.717 3 20 hm7G_associated_SNPs_13787 0 0 1 0 2 ZNF595;ZNF718 chr4:59323 3'AG 59323 Downstream 99bp 13248 chr4 59421 59421 1 + G T LUSC 59422 + 59402 59442 41 TGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTC TGTATAGAGATGTGATGTTTGAGAACTACAGGAACCTGGTC < 41bp 0.491113663197383 0.798025984357781 NA NA prediction 0.596051968715563 Functional Gain - ZNF595;ZNF718 ENSG00000197701 CDS Human other chr4:59422 chr4:59421 nonsynonymous SNV 0.717 3 20 hm7G_associated_SNPs_13787 0 0 1 0 2 ZNF595;ZNF718 chr4:59449 5'GT 59449 Upstream 29bp 13249 chr6 160183988 160183988 1 + G T UCEC 160183989 + 160183969 160184009 41 TAGCTGCTGTTCCTGTCCAGGACCTGGGCTCCACTGTCATC TAGCTGCTGTTCCTGTCCATGACCTGGGCTCCACTGTCATC < 41bp 0.478792642281048 0.798024649823287 NA NA prediction 0.596049299646573 Functional Gain - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160183989 chr6:160183988 nonsynonymous SNV 0.098 1 20 hm7G_associated_SNPs_13788 0 0 1 0 2 ACAT2 chr6:160183951 3'AG 160183951 Downstream 38bp 13250 chr6 160183988 160183988 1 + G T UCEC 160183989 + 160183969 160184009 41 TAGCTGCTGTTCCTGTCCAGGACCTGGGCTCCACTGTCATC TAGCTGCTGTTCCTGTCCATGACCTGGGCTCCACTGTCATC < 41bp 0.478792642281048 0.798024649823287 NA NA prediction 0.596049299646573 Functional Gain - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160183989 chr6:160183988 nonsynonymous SNV 0.098 1 20 hm7G_associated_SNPs_13788 0 0 1 0 2 ACAT2 chr6:160184085 5'GT 160184085 Upstream 98bp 13251 chr11 68177570 68177570 1 + G T SARC 68177571 + 68177551 68177591 41 TCCTCGTGTGGAGGGACTTGGACAACCCGAGGTCGCTGGCC TCCTCGTGTGGAGGGACTTTGACAACCCGAGGTCGCTGGCC < 41bp 0.473709164268431 0.79798783147993 NA NA prediction 0.595975662959861 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68177571 chr11:68177570 nonsynonymous SNV 0.933 4 20 hm7G_associated_SNPs_13790 0 0 1 0 1 LRP5 chr11:68177608 5'GT 68177608 Upstream 39bp 13252 chr9 90345351 90345351 1 + G T LUSC 90345352 + 90345332 90345372 41 TGGATCATGGTGTGCTGGTGGTTGGCTACGGATTTGAAAGC TGGATCATGGTGTGCTGGTTGTTGGCTACGGATTTGAAAGC < 41bp 0.513949984041607 0.81192106867952 NA NA prediction 0.595942169275826 Functional Gain - CTSL ENSG00000135047 CDS Human protein_coding chr9:90345352 chr9:90345351 synonymous SNV . 0 20 hm7G_associated_SNPs_13791 0 0 1 0 2 CTSL chr9:90345296 3'AG 90345296 Downstream 56bp 13253 chr9 90345351 90345351 1 + G T LUSC 90345352 + 90345332 90345372 41 TGGATCATGGTGTGCTGGTGGTTGGCTACGGATTTGAAAGC TGGATCATGGTGTGCTGGTTGTTGGCTACGGATTTGAAAGC < 41bp 0.513949984041607 0.81192106867952 NA NA prediction 0.595942169275826 Functional Gain - CTSL ENSG00000135047 CDS Human protein_coding chr9:90345352 chr9:90345351 synonymous SNV . 0 20 hm7G_associated_SNPs_13791 0 0 1 0 2 CTSL chr9:90345413 5'GT 90345413 Upstream 63bp 13254 chr9 104307119 104307119 1 + G T UCEC 104307120 + 104307100 104307140 41 AGGAGAATATGAGGCTACAGGAATTGACAGATCTTCTTCAG AGGAGAATATGAGGCTACATGAATTGACAGATCTTCTTCAG < 41bp 0.532201094764629 0.830144435212242 NA NA prediction 0.595886680895226 Functional Gain - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307120 chr9:104307119 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_13793 0 0 1 0 2 RNF20 chr9:104307049 3'AG 104307049 Downstream 71bp 13255 chr9 104307119 104307119 1 + G T UCEC 104307120 + 104307100 104307140 41 AGGAGAATATGAGGCTACAGGAATTGACAGATCTTCTTCAG AGGAGAATATGAGGCTACATGAATTGACAGATCTTCTTCAG < 41bp 0.532201094764629 0.830144435212242 NA NA prediction 0.595886680895226 Functional Gain - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104307120 chr9:104307119 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_13793 0 0 1 0 2 RNF20 chr9:104307167 5'GT 104307167 Upstream 49bp 13256 chr5 131667504 131667504 1 + G T LUSC 131667505 + 131667485 131667525 41 CTGGACCTGTTCAGGACTCGGAATATTGCCATAATGACCAT CTGGACCTGTTCAGGACTCTGAATATTGCCATAATGACCAT < 41bp 0.480226448585851 0.797900737459054 NA NA prediction 0.595801474918107 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131667505 chr5:131667504 nonsynonymous SNV 0.507 0 20 hm7G_associated_SNPs_13797 0 0 0 0 2 SLC22A4 chr5:131667449 3'AG 131667449 Downstream 56bp 13257 chr5 131667504 131667504 1 + G T LUSC 131667505 + 131667485 131667525 41 CTGGACCTGTTCAGGACTCGGAATATTGCCATAATGACCAT CTGGACCTGTTCAGGACTCTGAATATTGCCATAATGACCAT < 41bp 0.480226448585851 0.797900737459054 NA NA prediction 0.595801474918107 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131667505 chr5:131667504 nonsynonymous SNV 0.507 0 20 hm7G_associated_SNPs_13797 0 0 0 0 2 SLC22A4 chr5:131667543 5'GT 131667543 Upstream 40bp 13258 chr1 8399690 8399690 1 + G T THCA 8399691 + 8399671 8399711 41 GTCGCTCTGCATAACCTACGGGATTTTATTTTCCACCCTGT GTCGCTCTGCATAACCTACTGGATTTTATTTTCCACCCTGT < 41bp 0.475869089113345 0.797892327577321 NA NA prediction 0.595784655154643 Functional Gain - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8399691 chr1:8399690 nonsynonymous SNV 0.086 4 20 hm7G_associated_SNPs_13798 0 0 0 0 1 SLC45A1 chr1:8399758 5'GT 8399758 Upstream 69bp 13259 chr10 134916262 134916262 1 + G T UCEC 134916263 + 134916243 134916283 41 TGGATAGGAGTGACCGCCAGGAACATCTACAAGCAGGTGAC TGGATAGGAGTGACCGCCATGAACATCTACAAGCAGGTGAC < 41bp 0.537257391461933 0.83511492184789 NA NA prediction 0.595715060771914 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134916263 chr10:134916262 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13800 0 0 0 0 2 ADGRA1 chr10:134916201 3'AG 134916201 Downstream 62bp 13260 chr10 134916262 134916262 1 + G T UCEC 134916263 + 134916243 134916283 41 TGGATAGGAGTGACCGCCAGGAACATCTACAAGCAGGTGAC TGGATAGGAGTGACCGCCATGAACATCTACAAGCAGGTGAC < 41bp 0.537257391461933 0.83511492184789 NA NA prediction 0.595715060771914 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134916263 chr10:134916262 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13800 0 0 0 0 2 ADGRA1 chr10:134916346 5'GT 134916346 Upstream 85bp 13261 chr22 24577539 24577539 1 + G T CESC 24577540 + 24577520 24577560 41 GCTGCTGGCGACAGCCCTCGGCCCGGGCCCCGGACCCACAG GCTGCTGGCGACAGCCCTCTGCCCGGGCCCCGGACCCACAG < 41bp 0.515310499071556 0.813150666947243 NA NA prediction 0.595680335751374 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24577540 chr22:24577539 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_13801 0 0 0 0 1 SUSD2 chr22:24577563 5'GT 24577563 Upstream 25bp 13262 chr1 158225049 158225049 1 + G T CESC 158225050 + 158225030 158225070 41 GGGGAAACTTCAGCAATGAGGAGTGGAAGGAACTGGAAACA GGGGAAACTTCAGCAATGATGAGTGGAAGGAACTGGAAACA < 41bp 0.505139086111861 0.80297718692811 NA NA prediction 0.595676201632497 Functional Gain - CD1A ENSG00000158477 CDS Human protein_coding chr1:158225050 chr1:158225049 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_13803 0 0 0 0 1 CD1A chr1:158225140 5'GT 158225140 Upstream 92bp 13263 chr6 168944337 168944337 1 + G T LUAD 168944338 + 168944318 168944358 41 AAAGTTACCCCAACGCGAAGGCACAGGAAAAACAGGTAACT AAAGTTACCCCAACGCGAATGCACAGGAAAAACAGGTAACT < 41bp 0.504983704663639 0.802817224039163 NA NA prediction 0.595667038751048 Functional Gain - SMOC2 ENSG00000112562 CDS Human protein_coding chr6:168944338 chr6:168944337 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_13804 0 0 0 0 2 SMOC2 chr6:168944305 3'AG 168944305 Downstream 33bp 13264 chr6 168944337 168944337 1 + G T LUAD 168944338 + 168944318 168944358 41 AAAGTTACCCCAACGCGAAGGCACAGGAAAAACAGGTAACT AAAGTTACCCCAACGCGAATGCACAGGAAAAACAGGTAACT < 41bp 0.504983704663639 0.802817224039163 NA NA prediction 0.595667038751048 Functional Gain - SMOC2 ENSG00000112562 CDS Human protein_coding chr6:168944338 chr6:168944337 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_13804 0 0 0 0 2 SMOC2 chr6:168944352 5'GT 168944352 Upstream 16bp 13265 chr8 133829707 133829707 1 + G T LUAD 133829708 + 133829688 133829728 41 TACCGTAATGAATGTCCCAGGGCAGAAAAAGAGGATACACA TACCGTAATGAATGTCCCATGGCAGAAAAAGAGGATACACA < 41bp 0.519452432166225 0.817282254402044 NA NA prediction 0.595659644471638 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133829708 chr8:133829707 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_13806 0 0 1 2 1 PHF20L1 chr8:133829790 5'GT 133829790 Upstream 84bp 13266 chr13 27246116 27246116 1 + G T KIRC 27246117 + 27246097 27246137 41 GACAAAAGGAAAGAGAAAAGGCGTCAAAAGGTAAATAATTT GACAAAAGGAAAGAGAAAATGCGTCAAAAGGTAAATAATTT < 41bp 0.501327549431262 0.799149609336054 NA NA prediction 0.595644119809584 Functional Gain - WASF3 ENSG00000132970 CDS Human protein_coding chr13:27246117 chr13:27246116 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_13807 0 0 0 0 1 WASF3 chr13:27246126 5'GT 27246126 Upstream 11bp 13267 chr19 54501528 54501528 1 + G T LUAD 54501529 + 54501509 54501549 41 TTTTAAATTCTTCACCACGGGGGAGAATGCACGCATCTTTC TTTTAAATTCTTCACCACGTGGGAGAATGCACGCATCTTTC < 41bp 0.528583466177782 0.826403662210293 NA NA prediction 0.595640392065022 Functional Gain - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54501529 chr19:54501528 nonsynonymous SNV 0.874 4 20 hm7G_associated_SNPs_13808 0 0 0 0 2 CACNG6 chr19:54501493 3'AG 54501493 Downstream 36bp 13268 chr19 54501528 54501528 1 + G T LUAD 54501529 + 54501509 54501549 41 TTTTAAATTCTTCACCACGGGGGAGAATGCACGCATCTTTC TTTTAAATTCTTCACCACGTGGGAGAATGCACGCATCTTTC < 41bp 0.528583466177782 0.826403662210293 NA NA prediction 0.595640392065022 Functional Gain - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54501529 chr19:54501528 nonsynonymous SNV 0.874 4 20 hm7G_associated_SNPs_13808 0 0 0 0 2 CACNG6 chr19:54501567 5'GT 54501567 Upstream 40bp 13269 chr7 142566048 142566048 1 + G T STAD 142566049 + 142566029 142566069 41 CCTACGAGGACCCCTGTCAGGCCATCCGAGAACTTGCCCGG CCTACGAGGACCCCTGTCATGCCATCCGAGAACTTGCCCGG < 41bp 0.462727619220905 0.79780281596664 NA NA prediction 0.595605631933281 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566049 chr7:142566048 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13810 0 0 0 0 2 EPHB6 chr7:142565996 3'AG 142565996 Downstream 53bp 13270 chr7 142566048 142566048 1 + G T STAD 142566049 + 142566029 142566069 41 CCTACGAGGACCCCTGTCAGGCCATCCGAGAACTTGCCCGG CCTACGAGGACCCCTGTCATGCCATCCGAGAACTTGCCCGG < 41bp 0.462727619220905 0.79780281596664 NA NA prediction 0.595605631933281 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566049 chr7:142566048 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13810 0 0 0 0 2 EPHB6 chr7:142566115 5'GT 142566115 Upstream 68bp 13271 chr5 38370436 38370436 1 + G T LUAD 38370437 + 38370417 38370457 41 TGGACCTCAATCCATGAGCGGATCCAGATGGACTCCATGGT TGGACCTCAATCCATGAGCTGATCCAGATGGACTCCATGGT < 41bp 0.487196512693855 0.797797019545846 NA NA prediction 0.595594039091693 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38370437 chr5:38370436 nonsynonymous SNV 0.913 1 20 hm7G_associated_SNPs_13811 0 0 0 0 1 EGFLAM chr5:38370398 3'AG 38370398 Downstream 39bp 13272 chr22 31484540 31484540 1 + G T LUAD 31484541 + 31484521 31484561 41 CAGCGGGCTGCCCTGGCACGGCTGGCAGGGCAGCTGGAGTC CAGCGGGCTGCCCTGGCACTGCTGGCAGGGCAGCTGGAGTC < 41bp 0.470646700581577 0.797785389065871 NA NA prediction 0.595570778131741 Functional Gain - SMTN ENSG00000183963 CDS Human protein_coding chr22:31484541 chr22:31484540 nonsynonymous SNV 0.958 0 20 hm7G_associated_SNPs_13813 0 0 0 0 2 SMTN chr22:31484499 3'AG 31484499 Downstream 42bp 13273 chr22 31484540 31484540 1 + G T LUAD 31484541 + 31484521 31484561 41 CAGCGGGCTGCCCTGGCACGGCTGGCAGGGCAGCTGGAGTC CAGCGGGCTGCCCTGGCACTGCTGGCAGGGCAGCTGGAGTC < 41bp 0.470646700581577 0.797785389065871 NA NA prediction 0.595570778131741 Functional Gain - SMTN ENSG00000183963 CDS Human protein_coding chr22:31484541 chr22:31484540 nonsynonymous SNV 0.958 0 20 hm7G_associated_SNPs_13813 0 0 0 0 2 SMTN chr22:31484592 5'GT 31484592 Upstream 53bp 13274 chr17 41006656 41006656 1 + G T LUSC 41006657 + 41006637 41006677 41 CAACCACAGCAACAAGTGGGGTCACCCCCGGGGCTACCGCA CAACCACAGCAACAAGTGGTGTCACCCCCGGGGCTACCGCA < 41bp 0.537306435958526 0.835088421952049 NA NA prediction 0.595563971987046 Functional Gain - AOC3 ENSG00000131471 CDS Human protein_coding chr17:41006657 chr17:41006656 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_13814 0 0 1 0 1 AOC3 chr17:41006750 5'GT 41006750 Upstream 95bp 13275 chr14 76045934 76045934 1 + G T THCA 76045935 + 76045915 76045955 41 CATCGCTTCCGTCTGGTTCGGGGCTAATGAGGTTTCAACAG CATCGCTTCCGTCTGGTTCTGGGCTAATGAGGTTTCAACAG < 41bp 0.492270668873737 0.797773948502357 NA NA prediction 0.595547897004714 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76045935 chr14:76045934 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_13815 0 0 0 0 1 FLVCR2 chr14:76045984 5'GT 76045984 Upstream 51bp 13276 chr3 49738082 49738082 1 + G T UCEC 49738083 + 49738063 49738103 41 CCACAGATCCATTACCTGCGGCTCACTATCGCCATCCTGAG CCACAGATCCATTACCTGCTGCTCACTATCGCCATCCTGAG < 41bp 0.544600357244315 0.84236779664929 NA NA prediction 0.59553487880995 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49738083 chr3:49738082 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_13816 0 0 1 0 2 RNF123 chr3:49738069 3'AG 49738069 Downstream 14bp 13277 chr3 49738082 49738082 1 + G T UCEC 49738083 + 49738063 49738103 41 CCACAGATCCATTACCTGCGGCTCACTATCGCCATCCTGAG CCACAGATCCATTACCTGCTGCTCACTATCGCCATCCTGAG < 41bp 0.544600357244315 0.84236779664929 NA NA prediction 0.59553487880995 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49738083 chr3:49738082 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_13816 0 0 1 0 2 RNF123 chr3:49738142 5'GT 49738142 Upstream 61bp 13278 chr5 147480092 147480092 1 + G T COAD 147480093 + 147480073 147480113 41 AGAGAACGATCCTATCCAGGGCCCAGATGGGAAAGTGCATG AGAGAACGATCCTATCCAGTGCCCAGATGGGAAAGTGCATG < 41bp 0.539048178546968 0.836803121085025 NA NA prediction 0.595509885076115 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147480093 chr5:147480092 nonsynonymous SNV 0.810 3 20 hm7G_associated_SNPs_13817 0 0 0 0 2 SPINK5 chr5:147480017 3'AG 147480017 Downstream 76bp 13279 chr5 147480092 147480092 1 + G T COAD 147480093 + 147480073 147480113 41 AGAGAACGATCCTATCCAGGGCCCAGATGGGAAAGTGCATG AGAGAACGATCCTATCCAGTGCCCAGATGGGAAAGTGCATG < 41bp 0.539048178546968 0.836803121085025 NA NA prediction 0.595509885076115 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147480093 chr5:147480092 nonsynonymous SNV 0.810 3 20 hm7G_associated_SNPs_13817 0 0 0 0 2 SPINK5 chr5:147480144 5'GT 147480144 Upstream 53bp 13280 chr12 56629473 56629473 1 + G T UCEC 56629474 + 56629454 56629494 41 GGGGCTTTTGCGGCACCGAGGGCTCAGGCCAGTGAGTGATA GGGGCTTTTGCGGCACCGATGGCTCAGGCCAGTGAGTGATA < 41bp 0.532012637020935 0.829749738697139 NA NA prediction 0.595474203352409 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629474 chr12:56629473 nonsynonymous SNV 0.957 3 20 hm7G_associated_SNPs_13819 0 0 1 0 1 SLC39A5 chr12:56629484 5'GT 56629484 Upstream 12bp 13281 chr1 156702141 156702141 1 + G T BRCA 156702142 + 156702122 156702162 41 TGTGCCCTGGCCTTTACCCGGATGCCTGGCTTTCAGACCCC TGTGCCCTGGCCTTTACCCTGATGCCTGGCTTTCAGACCCC < 41bp 0.468094209311459 0.79773109034037 NA NA prediction 0.595462180680741 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702142 chr1:156702141 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13820 0 0 1 0 1 RRNAD1 chr1:156702073 3'AG 156702073 Downstream 69bp 13282 chr15 91496180 91496180 1 + G T BRCA 91496181 + 91496161 91496201 41 AGAAGATCCTGAAGGAGAAGGCTGTGCCCATGATAGAAGGC AGAAGATCCTGAAGGAGAATGCTGTGCCCATGATAGAAGGC < 41bp 0.545726459437735 0.843453716429008 NA NA prediction 0.595454513982546 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91496181 chr15:91496180 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_13821 0 0 1 0 2 UNC45A chr15:91496159 3'AG 91496159 Downstream 22bp 13283 chr15 91496180 91496180 1 + G T BRCA 91496181 + 91496161 91496201 41 AGAAGATCCTGAAGGAGAAGGCTGTGCCCATGATAGAAGGC AGAAGATCCTGAAGGAGAATGCTGTGCCCATGATAGAAGGC < 41bp 0.545726459437735 0.843453716429008 NA NA prediction 0.595454513982546 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91496181 chr15:91496180 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_13821 0 0 1 0 2 UNC45A chr15:91496276 5'GT 91496276 Upstream 97bp 13284 chr22 25016330 25016330 1 + G T ACC 25016331 + 25016311 25016351 41 GGTGCCTGGGGAGATCCGAGGCTATGAGCTGGCACACCAGC GGTGCCTGGGGAGATCCGATGCTATGAGCTGGCACACCAGC < 41bp 0.471777316890187 0.797722688918871 NA NA prediction 0.595445377837743 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25016331 chr22:25016330 nonsynonymous SNV 0.365 3 20 hm7G_associated_SNPs_13823 0 0 0 0 1 GGT1 chr22:25016295 3'AG 25016295 Downstream 36bp 13285 chr19 855783 855783 1 + G T LUSC 855784 + 855764 855804 41 CGTGAGGGGCCGGCAGGCCGGCGTCTGTTTCGTACGTGCCC CGTGAGGGGCCGGCAGGCCTGCGTCTGTTTCGTACGTGCCC < 41bp 0.491468543854192 0.797721254133179 NA NA prediction 0.595442508266358 Functional Gain - ELANE ENSG00000197561 CDS Human protein_coding chr19:855784 chr19:855783 nonsynonymous SNV 0.316 4 20 hm7G_associated_SNPs_13824 0 0 0 0 1 ELANE chr19:855794 5'GT 855794 Upstream 12bp 13286 chr22 41969722 41969722 1 + G T UCEC 41969723 + 41969703 41969743 41 AGCAGTTCTCACGCTCACAGGGCCATGGCTTCATCACCCCC AGCAGTTCTCACGCTCACATGGCCATGGCTTCATCACCCCC < 41bp 0.466035476711359 0.797715243818324 NA NA prediction 0.595430487636648 Functional Gain - CSDC2 ENSG00000172346 CDS Human protein_coding chr22:41969723 chr22:41969722 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13825 0 0 0 0 2 CSDC2 chr22:41969659 3'AG 41969659 Downstream 64bp 13287 chr22 41969722 41969722 1 + G T UCEC 41969723 + 41969703 41969743 41 AGCAGTTCTCACGCTCACAGGGCCATGGCTTCATCACCCCC AGCAGTTCTCACGCTCACATGGCCATGGCTTCATCACCCCC < 41bp 0.466035476711359 0.797715243818324 NA NA prediction 0.595430487636648 Functional Gain - CSDC2 ENSG00000172346 CDS Human protein_coding chr22:41969723 chr22:41969722 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13825 0 0 0 0 2 CSDC2 chr22:41969781 5'GT 41969781 Upstream 60bp 13288 chr9 127563878 127563878 1 + G T LIHC 127563879 + 127563859 127563899 41 GCGCCCTGGCCCAGCAGCAGGCTGTGATCCGGGGCTTCACC GCGCCCTGGCCCAGCAGCATGCTGTGATCCGGGGCTTCACC < 41bp 0.464438604841298 0.797703169784305 NA NA prediction 0.59540633956861 Functional Gain - OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127563879 chr9:127563878 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_13827 0 0 0 0 1 OLFML2A chr9:127563942 5'GT 127563942 Upstream 65bp 13289 chr19 38882594 38882594 1 + G T BRCA 38882595 + 38882575 38882615 41 CTGCCCCTCAGACAACCTTGGAGTGTACACTGAAGCCAGGC CTGCCCCTCAGACAACCTTTGAGTGTACACTGAAGCCAGGC < 41bp 0.537745324643543 0.83540529474116 NA NA prediction 0.595319940195233 Functional Gain - SPRED3 ENSG00000188766 CDS Human protein_coding chr19:38882595 chr19:38882594 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13828 0 0 1 0 1 SPRED3 chr19:38882586 3'AG 38882586 Downstream 9bp 13290 chr20 2840774 2840774 1 + G T LUAD 2840775 + 2840755 2840795 41 CGATATATACTCTGCTTCCGGCATGCCTCTGGCCAGCCTGC CGATATATACTCTGCTTCCTGCATGCCTCTGGCCAGCCTGC < 41bp 0.470832487958928 0.797658854171115 NA NA prediction 0.59531770834223 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840775 chr20:2840774 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_13829 0 0 1 0 2 VPS16 chr20:2840700 3'AG 2840700 Downstream 75bp 13291 chr20 2840774 2840774 1 + G T LUAD 2840775 + 2840755 2840795 41 CGATATATACTCTGCTTCCGGCATGCCTCTGGCCAGCCTGC CGATATATACTCTGCTTCCTGCATGCCTCTGGCCAGCCTGC < 41bp 0.470832487958928 0.797658854171115 NA NA prediction 0.59531770834223 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840775 chr20:2840774 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_13829 0 0 1 0 2 VPS16 chr20:2840797 5'GT 2840797 Upstream 24bp 13292 chr17 45820495 45820495 1 + G T OV 45820496 + 45820476 45820516 41 GAGCGCACTGGATGCGCCAGGAAGTTTCATTTGGGAAACTA GAGCGCACTGGATGCGCCATGAAGTTTCATTTGGGAAACTA < 41bp 0.473159708356078 0.797656070144583 NA NA prediction 0.595312140289166 Functional Gain - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45820496 chr17:45820495 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13830 0 0 0 0 2 TBX21 chr17:45820437 3'AG 45820437 Downstream 59bp 13293 chr17 45820495 45820495 1 + G T OV 45820496 + 45820476 45820516 41 GAGCGCACTGGATGCGCCAGGAAGTTTCATTTGGGAAACTA GAGCGCACTGGATGCGCCATGAAGTTTCATTTGGGAAACTA < 41bp 0.473159708356078 0.797656070144583 NA NA prediction 0.595312140289166 Functional Gain - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45820496 chr17:45820495 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13830 0 0 0 0 2 TBX21 chr17:45820558 5'GT 45820558 Upstream 64bp 13294 chr6 37440215 37440215 1 + G T UCEC 37440216 + 37440196 37440236 41 TCCCAGACCAGGCTCGTGTGGCTCCTTCTTCCTCCGACCCT TCCCAGACCAGGCTCGTGTTGCTCCTTCTTCCTCCGACCCT < 41bp 0.468472957645607 0.797640103280807 NA NA prediction 0.595280206561614 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37440216 chr6:37440215 synonymous SNV . 0 20 hm7G_associated_SNPs_13831 0 0 1 0 2 CMTR1 chr6:37440195 3'AG 37440195 Downstream 21bp 13295 chr6 37440215 37440215 1 + G T UCEC 37440216 + 37440196 37440236 41 TCCCAGACCAGGCTCGTGTGGCTCCTTCTTCCTCCGACCCT TCCCAGACCAGGCTCGTGTTGCTCCTTCTTCCTCCGACCCT < 41bp 0.468472957645607 0.797640103280807 NA NA prediction 0.595280206561614 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37440216 chr6:37440215 synonymous SNV . 0 20 hm7G_associated_SNPs_13831 0 0 1 0 2 CMTR1 chr6:37440263 5'GT 37440263 Upstream 49bp 13296 chr1 156626131 156626131 1 + G T LUSC 156626132 + 156626112 156626152 41 TGCTTGGAGGAGGAGGAAGGGGTCCGCTGCCTATGTCTGCC TGCTTGGAGGAGGAGGAAGTGGTCCGCTGCCTATGTCTGCC < 41bp 0.473191631445497 0.797629589411438 NA NA prediction 0.595259178822876 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156626132 chr1:156626131 nonsynonymous SNV 0.868 1 20 hm7G_associated_SNPs_13833 0 0 0 0 2 BCAN chr1:156626074 3'AG 156626074 Downstream 58bp 13297 chr1 156626131 156626131 1 + G T LUSC 156626132 + 156626112 156626152 41 TGCTTGGAGGAGGAGGAAGGGGTCCGCTGCCTATGTCTGCC TGCTTGGAGGAGGAGGAAGTGGTCCGCTGCCTATGTCTGCC < 41bp 0.473191631445497 0.797629589411438 NA NA prediction 0.595259178822876 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156626132 chr1:156626131 nonsynonymous SNV 0.868 1 20 hm7G_associated_SNPs_13833 0 0 0 0 2 BCAN chr1:156626181 5'GT 156626181 Upstream 51bp 13298 chr5 79809532 79809532 1 + G T STAD 79809533 + 79809513 79809553 41 ACAGTGATAATACTCTACAGGAGTGGCTGACTGAAGTTATG ACAGTGATAATACTCTACATGAGTGGCTGACTGAAGTTATG < 41bp 0.505009272013851 0.802630118532974 NA NA prediction 0.595241693038245 Functional Gain - FAM151B ENSG00000152380 CDS Human protein_coding chr5:79809533 chr5:79809532 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_13834 0 0 0 0 1 FAM151B chr5:79809588 5'GT 79809588 Upstream 57bp 13299 chrX 54578812 54578812 1 + G T UCEC 54578813 + 54578793 54578833 41 TCGTTAAGGAAATGACCGAGGTCTTTGACATCGAGGATACT TCGTTAAGGAAATGACCGATGTCTTTGACATCGAGGATACT < 41bp 0.52179311246877 0.819380742304039 NA NA prediction 0.595175259670537 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54578813 chrX:54578812 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_13837 0 0 1 0 2 GNL3L chrX:54578725 3'AG 54578725 Downstream 88bp 13300 chrX 54578812 54578812 1 + G T UCEC 54578813 + 54578793 54578833 41 TCGTTAAGGAAATGACCGAGGTCTTTGACATCGAGGATACT TCGTTAAGGAAATGACCGATGTCTTTGACATCGAGGATACT < 41bp 0.52179311246877 0.819380742304039 NA NA prediction 0.595175259670537 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54578813 chrX:54578812 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_13837 0 0 1 0 2 GNL3L chrX:54578861 5'GT 54578861 Upstream 50bp 13301 chr10 23290868 23290868 1 + G T LUAD 23290869 + 23290849 23290889 41 TAAGAAATTCTGGTGGATTGGAGCCCCTGGTAGAGCTGCTA TAAGAAATTCTGGTGGATTTGAGCCCCTGGTAGAGCTGCTA < 41bp 0.519414397759903 0.816972364158311 NA NA prediction 0.595115932796816 Functional Gain - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23290869 chr10:23290868 nonsynonymous SNV 0.207 4 20 hm7G_associated_SNPs_13841 0 0 0 0 1 ARMC3 chr10:23290848 3'AG 23290848 Downstream 21bp 13302 chr12 77242136 77242136 1 + G T DLBC 77242137 + 77242117 77242157 41 AGTGTTTTCCACTTCATGTGGGTGGCTGTATTACTCATGTG AGTGTTTTCCACTTCATGTTGGTGGCTGTATTACTCATGTG < 41bp 0.517692531502387 0.815192844944553 NA NA prediction 0.595000626884332 Functional Gain - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77242137 chr12:77242136 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13843 0 0 1 0 1 ZDHHC17 chr12:77242170 5'GT 77242170 Upstream 35bp 13303 chr19 37961266 37961266 1 + G T LUSC 37961267 + 37961247 37961287 41 GGAAGAAAGAATGGCTGTTGGGCTTCTTAAAGCCATGTACC GGAAGAAAGAATGGCTGTTTGGCTTCTTAAAGCCATGTACC < 41bp 0.523984034853132 0.821472044515845 NA NA prediction 0.594976019325425 Functional Gain - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37961267 chr19:37961266 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_13844 0 0 0 0 2 ZNF570 chr19:37961206 3'AG 37961206 Downstream 61bp 13304 chr19 37961266 37961266 1 + G T LUSC 37961267 + 37961247 37961287 41 GGAAGAAAGAATGGCTGTTGGGCTTCTTAAAGCCATGTACC GGAAGAAAGAATGGCTGTTTGGCTTCTTAAAGCCATGTACC < 41bp 0.523984034853132 0.821472044515845 NA NA prediction 0.594976019325425 Functional Gain - ZNF570 ENSG00000171827 CDS Human protein_coding chr19:37961267 chr19:37961266 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_13844 0 0 0 0 2 ZNF570 chr19:37961289 5'GT 37961289 Upstream 24bp 13305 chr7 6631427 6631427 1 + G T LUAD 6631428 + 6631408 6631448 41 CAGCCGGATGAGCTTGTTGGGAAAACTGGTCTCCATGGCGG CAGCCGGATGAGCTTGTTGTGAAAACTGGTCTCCATGGCGG < 41bp 0.536398273611135 0.83388387792082 NA NA prediction 0.59497120861937 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631428 chr7:6631427 stopgain 1.000 1 20 hm7G_associated_SNPs_13845 0 0 1 0 2 C7orf26 chr7:6631334 3'AG 6631334 Downstream 94bp 13306 chr7 6631427 6631427 1 + G T LUAD 6631428 + 6631408 6631448 41 CAGCCGGATGAGCTTGTTGGGAAAACTGGTCTCCATGGCGG CAGCCGGATGAGCTTGTTGTGAAAACTGGTCTCCATGGCGG < 41bp 0.536398273611135 0.83388387792082 NA NA prediction 0.59497120861937 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6631428 chr7:6631427 stopgain 1.000 1 20 hm7G_associated_SNPs_13845 0 0 1 0 2 C7orf26 chr7:6631498 5'GT 6631498 Upstream 72bp 13307 chr14 63671684 63671684 1 + G T LUAD 63671685 + 63671665 63671705 41 GGTGGGGGACGGTGCCGTGGGGAAAACCTGCCTGCTGATGA GGTGGGGGACGGTGCCGTGTGGAAAACCTGCCTGCTGATGA < 41bp 0.495030550239383 0.797476716200883 NA NA prediction 0.594953432401765 Functional Gain - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63671685 chr14:63671684 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13846 0 0 0 0 1 RHOJ chr14:63671765 5'GT 63671765 Upstream 82bp 13308 chr22 39479787 39479787 1 + G T KIRP 39479788 + 39479768 39479808 41 ACTTTAACAATGAACCTTGGGTCAGAGGACGGCATGAGACT ACTTTAACAATGAACCTTGTGTCAGAGGACGGCATGAGACT < 41bp 0.512067064148666 0.809536804957263 NA NA prediction 0.594939481617195 Functional Gain - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39479788 chr22:39479787 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_13847 0 0 0 0 1 APOBEC3G chr22:39479736 3'AG 39479736 Downstream 52bp 13309 chrX 100364529 100364529 1 + G T LUAD 100364530 + 100364510 100364550 41 TAATATCAGAAGATTCTGTGGTTAAGGCAGTCTCCTGGCTT TAATATCAGAAGATTCTGTTGTTAAGGCAGTCTCCTGGCTT < 41bp 0.512725079199447 0.81019082290501 NA NA prediction 0.594931487411127 Functional Gain - CENPI ENSG00000102384 CDS Human protein_coding chrX:100364530 chrX:100364529 synonymous SNV . 0 20 hm7G_associated_SNPs_13849 0 0 1 0 2 CENPI chrX:100364462 3'AG 100364462 Downstream 68bp 13310 chrX 100364529 100364529 1 + G T LUAD 100364530 + 100364510 100364550 41 TAATATCAGAAGATTCTGTGGTTAAGGCAGTCTCCTGGCTT TAATATCAGAAGATTCTGTTGTTAAGGCAGTCTCCTGGCTT < 41bp 0.512725079199447 0.81019082290501 NA NA prediction 0.594931487411127 Functional Gain - CENPI ENSG00000102384 CDS Human protein_coding chrX:100364530 chrX:100364529 synonymous SNV . 0 20 hm7G_associated_SNPs_13849 0 0 1 0 2 CENPI chrX:100364580 5'GT 100364580 Upstream 52bp 13311 chr10 118960727 118960727 1 + G T LUSC 118960728 + 118960708 118960748 41 CAGAAGGTGAAGCCTCAGTGGTTTAACAGGACCACACACTG CAGAAGGTGAAGCCTCAGTTGTTTAACAGGACCACACACTG < 41bp 0.482113081676046 0.797456360361978 NA NA prediction 0.594912720723956 Functional Gain - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960728 chr10:118960727 nonsynonymous SNV 0.194 2 20 hm7G_associated_SNPs_13851 0 0 0 0 2 KCNK18 chr10:118960670 3'AG 118960670 Downstream 58bp 13312 chr10 118960727 118960727 1 + G T LUSC 118960728 + 118960708 118960748 41 CAGAAGGTGAAGCCTCAGTGGTTTAACAGGACCACACACTG CAGAAGGTGAAGCCTCAGTTGTTTAACAGGACCACACACTG < 41bp 0.482113081676046 0.797456360361978 NA NA prediction 0.594912720723956 Functional Gain - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960728 chr10:118960727 nonsynonymous SNV 0.194 2 20 hm7G_associated_SNPs_13851 0 0 0 0 2 KCNK18 chr10:118960798 5'GT 118960798 Upstream 72bp 13313 chr11 6291510 6291510 1 + G T LUAD 6291511 + 6291491 6291531 41 ACTGTCGTGCAACCAGTGGGGCCTCGTGTGCTGCAGTGCGT ACTGTCGTGCAACCAGTGGTGCCTCGTGTGCTGCAGTGCGT < 41bp 0.46585750870361 0.797451823684626 NA NA prediction 0.594903647369252 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291511 chr11:6291510 nonsynonymous SNV 0.020 0 20 hm7G_associated_SNPs_13853 0 0 0 0 1 CCKBR chr11:6291567 5'GT 6291567 Upstream 58bp 13314 chr8 97797463 97797463 1 + G T SKCM 97797464 + 97797444 97797484 41 CCAGTGAGAATACCCCACTGGGAGAGGGGAGAAGAATCAGC CCAGTGAGAATACCCCACTTGGAGAGGGGAGAAGAATCAGC < 41bp 0.51469881093929 0.812104973412895 NA NA prediction 0.594812324947208 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97797464 chr8:97797463 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13856 0 0 1 0 1 CPQ chr8:97797558 5'GT 97797558 Upstream 96bp 13315 chr19 6919688 6919688 1 + G T BLCA 6919689 + 6919669 6919709 41 ATGAATTCTCGAGTCGTTGGGGGCATAATGACTGGAGAGAA ATGAATTCTCGAGTCGTTGTGGGCATAATGACTGGAGAGAA < 41bp 0.522675220076331 0.8200563039252 NA NA prediction 0.594762167697739 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6919689 chr19:6919688 nonsynonymous SNV 0.013 2 20 hm7G_associated_SNPs_13859 0 0 0 0 1 ADGRE1 chr19:6919758 5'GT 6919758 Upstream 71bp 13316 chr7 141730191 141730191 1 + G T GBM 141730192 + 141730172 141730212 41 ATGCTGATATTGATTATATGGATGAGAGAAGGGACTTCACT ATGCTGATATTGATTATATTGATGAGAGAAGGGACTTCACT < 41bp 0.509579376130738 0.806936975483796 NA NA prediction 0.594715198706115 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141730192 chr7:141730191 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_13862 0 0 0 0 1 MGAM chr7:141730162 3'AG 141730162 Downstream 30bp 13317 chr1 47512181 47512181 1 + G T UCEC 47512182 + 47512162 47512202 41 ACACCACAATGTGCATCAAGGAGACGTGCCGATTGATTCCT ACACCACAATGTGCATCAATGAGACGTGCCGATTGATTCCT < 41bp 0.482074218665881 0.797346712967248 NA NA prediction 0.594693425934495 Functional Gain - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47512182 chr1:47512181 nonsynonymous SNV 0.959 4 20 hm7G_associated_SNPs_13863 0 0 0 0 2 CYP4X1 chr1:47512139 3'AG 47512139 Downstream 43bp 13318 chr1 47512181 47512181 1 + G T UCEC 47512182 + 47512162 47512202 41 ACACCACAATGTGCATCAAGGAGACGTGCCGATTGATTCCT ACACCACAATGTGCATCAATGAGACGTGCCGATTGATTCCT < 41bp 0.482074218665881 0.797346712967248 NA NA prediction 0.594693425934495 Functional Gain - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47512182 chr1:47512181 nonsynonymous SNV 0.959 4 20 hm7G_associated_SNPs_13863 0 0 0 0 2 CYP4X1 chr1:47512272 5'GT 47512272 Upstream 92bp 13319 chr11 120918293 120918293 1 + G T LUAD 120918294 + 120918274 120918314 41 CTGTGGAATAACCTGTGCAGGAGATGAAAAAGAAATTGCTG CTGTGGAATAACCTGTGCATGAGATGAAAAAGAAATTGCTG < 41bp 0.49533900625718 0.797343242762926 NA NA prediction 0.594686485525852 Functional Gain - TBCEL ENSG00000154114 CDS Human protein_coding chr11:120918294 chr11:120918293 stopgain 0.998 1 20 hm7G_associated_SNPs_13864 0 0 1 0 2 TBCEL chr11:120918237 3'AG 120918237 Downstream 57bp 13320 chr11 120918293 120918293 1 + G T LUAD 120918294 + 120918274 120918314 41 CTGTGGAATAACCTGTGCAGGAGATGAAAAAGAAATTGCTG CTGTGGAATAACCTGTGCATGAGATGAAAAAGAAATTGCTG < 41bp 0.49533900625718 0.797343242762926 NA NA prediction 0.594686485525852 Functional Gain - TBCEL ENSG00000154114 CDS Human protein_coding chr11:120918294 chr11:120918293 stopgain 0.998 1 20 hm7G_associated_SNPs_13864 0 0 1 0 2 TBCEL chr11:120918376 5'GT 120918376 Upstream 84bp 13321 chr15 74627388 74627388 1 + G T UCEC 74627389 + 74627369 74627409 41 GCTGCAGGAGCAAGAAAAAGGTTTCAGGCACCCCTCGAACT GCTGCAGGAGCAAGAAAAATGTTTCAGGCACCCCTCGAACT < 41bp 0.482357034951486 0.797337200344422 NA NA prediction 0.594674400688844 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74627389 chr15:74627388 nonsynonymous SNV 0.003 4 20 hm7G_associated_SNPs_13865 0 0 0 0 2 CCDC33 chr15:74627316 3'AG 74627316 Downstream 73bp 13322 chr15 74627388 74627388 1 + G T UCEC 74627389 + 74627369 74627409 41 GCTGCAGGAGCAAGAAAAAGGTTTCAGGCACCCCTCGAACT GCTGCAGGAGCAAGAAAAATGTTTCAGGCACCCCTCGAACT < 41bp 0.482357034951486 0.797337200344422 NA NA prediction 0.594674400688844 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74627389 chr15:74627388 nonsynonymous SNV 0.003 4 20 hm7G_associated_SNPs_13865 0 0 0 0 2 CCDC33 chr15:74627429 5'GT 74627429 Upstream 42bp 13323 chr19 55814186 55814186 1 + G T STAD 55814187 + 55814167 55814207 41 AGAGAGCATGGCATCACTGGGCTGCTTCAGGGACCGCGAGA AGAGAGCATGGCATCACTGTGCTGCTTCAGGGACCGCGAGA < 41bp 0.551198458413743 0.848521350306891 NA NA prediction 0.594645783786296 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55814187 chr19:55814186 nonsynonymous SNV 0.960 4 20 hm7G_associated_SNPs_13868 0 0 0 0 1 BRSK1 chr19:55814235 5'GT 55814235 Upstream 50bp 13324 chrX 105891582 105891582 1 + G T UCEC 105891583 + 105891563 105891603 41 GAGCTTCTGTACAAACAAAGGGAATTAAACCGGGCATGCCA GAGCTTCTGTACAAACAAATGGAATTAAACCGGGCATGCCA < 41bp 0.491858409411932 0.797314202985411 NA NA prediction 0.594628405970821 Functional Gain - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105891583 chrX:105891582 nonsynonymous SNV 0.167 0 20 hm7G_associated_SNPs_13870 0 0 0 0 1 CXorf57 chrX:105891616 5'GT 105891616 Upstream 35bp 13325 chr12 113822701 113822701 1 + G T LUAD 113822702 + 113822682 113822722 41 ACTACAAGGCGTTCATCCCGGGTGGGCCCAGCCCCGGGAGC ACTACAAGGCGTTCATCCCTGGTGGGCCCAGCCCCGGGAGC < 41bp 0.54852258030899 0.845833993105422 NA NA prediction 0.594622825592864 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113822702 chr12:113822701 synonymous SNV . 0 20 hm7G_associated_SNPs_13871 0 0 1 0 2 PLBD2 chr12:113822656 3'AG 113822656 Downstream 46bp 13326 chr12 113822701 113822701 1 + G T LUAD 113822702 + 113822682 113822722 41 ACTACAAGGCGTTCATCCCGGGTGGGCCCAGCCCCGGGAGC ACTACAAGGCGTTCATCCCTGGTGGGCCCAGCCCCGGGAGC < 41bp 0.54852258030899 0.845833993105422 NA NA prediction 0.594622825592864 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113822702 chr12:113822701 synonymous SNV . 0 20 hm7G_associated_SNPs_13871 0 0 1 0 2 PLBD2 chr12:113822751 5'GT 113822751 Upstream 51bp 13327 chr20 30610545 30610545 1 + G T HNSC 30610546 + 30610526 30610566 41 AGTATTGAGTGTGTGGACCGGGCTGGCTACCACTACACATC AGTATTGAGTGTGTGGACCTGGCTGGCTACCACTACACATC < 41bp 0.540713845945965 0.838021794806276 NA NA prediction 0.594615897720621 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30610546 chr20:30610545 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_13872 0 0 0 0 2 CCM2L chr20:30610463 3'AG 30610463 Downstream 83bp 13328 chr20 30610545 30610545 1 + G T HNSC 30610546 + 30610526 30610566 41 AGTATTGAGTGTGTGGACCGGGCTGGCTACCACTACACATC AGTATTGAGTGTGTGGACCTGGCTGGCTACCACTACACATC < 41bp 0.540713845945965 0.838021794806276 NA NA prediction 0.594615897720621 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30610546 chr20:30610545 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_13872 0 0 0 0 2 CCM2L chr20:30610598 5'GT 30610598 Upstream 54bp 13329 chr22 41721821 41721821 1 + G T UCEC 41721822 + 41721802 41721842 41 TCTGGTGCAGTACATGGAAGGGCTGAACGTGGCCGACTACG TCTGGTGCAGTACATGGAATGGCTGAACGTGGCCGACTACG < 41bp 0.470313875006863 0.797296887958798 NA NA prediction 0.594593775917595 Functional Gain - ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41721822 chr22:41721821 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13873 0 0 1 0 1 ZC3H7B chr22:41721725 3'AG 41721725 Downstream 97bp 13330 chr17 34913105 34913105 1 + G T STAD 34913106 + 34913086 34913126 41 CCCTAACAGTAGGGCCCAAGGGAGTCCTGTCTGTAACTAGA CCCTAACAGTAGGGCCCAATGGAGTCCTGTCTGTAACTAGA < 41bp 0.478107374170835 0.797292998688235 NA NA prediction 0.59458599737647 Functional Gain - GGNBP2 ENSG00000005955 CDS Human other chr17:34913106 chr17:34913105 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_13874 0 0 1 0 1 GGNBP2 chr17:34913176 5'GT 34913176 Upstream 72bp 13331 chr7 117176688 117176688 1 + G T LIHC 117176689 + 117176669 117176709 41 TCTGTTAAGGCATACTGCTGGGAAGAAGCAATGGAAAAAAT TCTGTTAAGGCATACTGCTTGGAAGAAGCAATGGAAAAAAT < 41bp 0.500732166825415 0.798008153554045 NA NA prediction 0.59455197345726 Functional Gain - CFTR ENSG00000001626 CDS Human protein_coding chr7:117176689 chr7:117176688 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13876 0 0 0 0 2 CFTR chr7:117176602 3'AG 117176602 Downstream 87bp 13332 chr7 117176688 117176688 1 + G T LIHC 117176689 + 117176669 117176709 41 TCTGTTAAGGCATACTGCTGGGAAGAAGCAATGGAAAAAAT TCTGTTAAGGCATACTGCTTGGAAGAAGCAATGGAAAAAAT < 41bp 0.500732166825415 0.798008153554045 NA NA prediction 0.59455197345726 Functional Gain - CFTR ENSG00000001626 CDS Human protein_coding chr7:117176689 chr7:117176688 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_13876 0 0 0 0 2 CFTR chr7:117176727 5'GT 117176727 Upstream 40bp 13333 chr4 159627931 159627931 1 + G T LIHC 159627932 + 159627912 159627952 41 CCGGCACACTTAACCTTAAGGGATGACAGTATACCTGTAAA CCGGCACACTTAACCTTAATGGATGACAGTATACCTGTAAA < 41bp 0.514106742327417 0.811372931818167 NA NA prediction 0.594532378981501 Functional Gain - ETFDH ENSG00000171503 CDS Human protein_coding chr4:159627932 chr4:159627931 nonsynonymous SNV 0.677 2 20 hm7G_associated_SNPs_13878 0 0 1 0 1 ETFDH chr4:159628002 5'GT 159628002 Upstream 72bp 13334 chr13 25276131 25276131 1 + G T UCEC 25276132 + 25276112 25276152 41 GCTATTGCCAAGAGTGTGGGGATCATTTCAGCCAACAGTGA GCTATTGCCAAGAGTGTGGTGATCATTTCAGCCAACAGTGA < 41bp 0.543978838684132 0.841233248153703 NA NA prediction 0.594508818939141 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25276132 chr13:25276131 nonsynonymous SNV 0.015 5 20 hm7G_associated_SNPs_13879 0 0 0 0 2 ATP12A chr13:25276073 3'AG 25276073 Downstream 59bp 13335 chr13 25276131 25276131 1 + G T UCEC 25276132 + 25276112 25276152 41 GCTATTGCCAAGAGTGTGGGGATCATTTCAGCCAACAGTGA GCTATTGCCAAGAGTGTGGTGATCATTTCAGCCAACAGTGA < 41bp 0.543978838684132 0.841233248153703 NA NA prediction 0.594508818939141 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25276132 chr13:25276131 nonsynonymous SNV 0.015 5 20 hm7G_associated_SNPs_13879 0 0 0 0 2 ATP12A chr13:25276209 5'GT 25276209 Upstream 79bp 13336 chr5 78373342 78373342 1 + G T HNSC 78373343 + 78373323 78373363 41 GAGTGGGGAGGTTGTGATTGGAGATGGCAGCTTTCTCATTA GAGTGGGGAGGTTGTGATTTGAGATGGCAGCTTTCTCATTA < 41bp 0.48768041450756 0.797251747546318 NA NA prediction 0.594503495092636 Functional Gain - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78373343 chr5:78373342 stopgain 0.995 1 20 hm7G_associated_SNPs_13880 0 0 1 0 2 BHMT2 chr5:78373303 3'AG 78373303 Downstream 40bp 13337 chr5 78373342 78373342 1 + G T HNSC 78373343 + 78373323 78373363 41 GAGTGGGGAGGTTGTGATTGGAGATGGCAGCTTTCTCATTA GAGTGGGGAGGTTGTGATTTGAGATGGCAGCTTTCTCATTA < 41bp 0.48768041450756 0.797251747546318 NA NA prediction 0.594503495092636 Functional Gain - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78373343 chr5:78373342 stopgain 0.995 1 20 hm7G_associated_SNPs_13880 0 0 1 0 2 BHMT2 chr5:78373435 5'GT 78373435 Upstream 94bp 13338 chr2 219538431 219538431 1 + G T COAD 219538432 + 219538412 219538452 41 GAGAGATTGAAATAATGCGGGGTCTGCGGCATCCCAACATT GAGAGATTGAAATAATGCGTGGTCTGCGGCATCCCAACATT < 41bp 0.467495498485794 0.797239796354738 NA NA prediction 0.594479592709476 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219538432 chr2:219538431 synonymous SNV . 0 20 hm7G_associated_SNPs_13883 0 0 1 0 2 STK36 chr2:219538348 3'AG 219538348 Downstream 84bp 13339 chr2 219538431 219538431 1 + G T COAD 219538432 + 219538412 219538452 41 GAGAGATTGAAATAATGCGGGGTCTGCGGCATCCCAACATT GAGAGATTGAAATAATGCGTGGTCTGCGGCATCCCAACATT < 41bp 0.467495498485794 0.797239796354738 NA NA prediction 0.594479592709476 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219538432 chr2:219538431 synonymous SNV . 0 20 hm7G_associated_SNPs_13883 0 0 1 0 2 STK36 chr2:219538488 5'GT 219538488 Upstream 58bp 13340 chr15 27114398 27114398 1 + G T LUAD 27114399 + 27114379 27114419 41 TACTATTCTTATTGGGAATGGACAATGGAATGTTCTCTGGT TACTATTCTTATTGGGAATTGACAATGGAATGTTCTCTGGT < 41bp 0.496988568324998 0.797232040159419 NA NA prediction 0.594464080318837 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27114399 chr15:27114398 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13886 0 0 0 0 2 GABRA5 chr15:27114322 3'AG 27114322 Downstream 77bp 13341 chr15 27114398 27114398 1 + G T LUAD 27114399 + 27114379 27114419 41 TACTATTCTTATTGGGAATGGACAATGGAATGTTCTCTGGT TACTATTCTTATTGGGAATTGACAATGGAATGTTCTCTGGT < 41bp 0.496988568324998 0.797232040159419 NA NA prediction 0.594464080318837 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27114399 chr15:27114398 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13886 0 0 0 0 2 GABRA5 chr15:27114481 5'GT 27114481 Upstream 84bp 13342 chr2 172945095 172945095 1 + G T LUAD 172945096 + 172945076 172945116 41 CGGTTCTGATCACGTCGAGGGGCGCGCAGATCCTGACCAAA CGGTTCTGATCACGTCGAGTGGCGCGCAGATCCTGACCAAA < 41bp 0.491175731384476 0.797212955087886 NA NA prediction 0.594425910175772 Functional Gain - METAP1D ENSG00000172878 CDS Human protein_coding chr2:172945096 chr2:172945095 nonsynonymous SNV 0.538 0 20 hm7G_associated_SNPs_13888 0 0 0 0 1 METAP1D chr2:172945056 3'AG 172945056 Downstream 40bp 13343 chr17 43213515 43213515 1 + G T rs199574823 43213516 + 43213496 43213536 41 CAGGGCTCGCAGCAGCATGGGCACCGAGAAAGAAAGCCCAG CAGGGCTCGCAGCAGCATGTGCACCGAGAAAGAAAGCCCAG < 41bp 0.512886687973606 0.810093325276091 NA NA prediction 0.594413274604972 Functional Gain - ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43213516 chr17:43213515 nonsynonymous SNV 0.792 3 20 hm7G_associated_SNPs_13889 0 0 0 0 2 ACBD4 chr17:43213475 3'AG 43213475 Downstream 41bp 13344 chr17 43213515 43213515 1 + G T rs199574823 43213516 + 43213496 43213536 41 CAGGGCTCGCAGCAGCATGGGCACCGAGAAAGAAAGCCCAG CAGGGCTCGCAGCAGCATGTGCACCGAGAAAGAAAGCCCAG < 41bp 0.512886687973606 0.810093325276091 NA NA prediction 0.594413274604972 Functional Gain - ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43213516 chr17:43213515 nonsynonymous SNV 0.792 3 20 hm7G_associated_SNPs_13889 0 0 0 0 2 ACBD4 chr17:43213599 5'GT 43213599 Upstream 85bp 13345 chr6 134212865 134212865 1 + G T CESC 134212866 + 134212846 134212886 41 CGCAGACGTGGCCCTTTATGGTGGCCGGGAAACCCGAGAGT CGCAGACGTGGCCCTTTATTGTGGCCGGGAAACCCGAGAGT < 41bp 0.488416567333661 0.797173823217042 NA NA prediction 0.594347646434085 Functional Gain - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134212866 chr6:134212865 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13891 0 0 0 0 2 TCF21 chr6:134212851 3'AG 134212851 Downstream 15bp 13346 chr6 134212865 134212865 1 + G T CESC 134212866 + 134212846 134212886 41 CGCAGACGTGGCCCTTTATGGTGGCCGGGAAACCCGAGAGT CGCAGACGTGGCCCTTTATTGTGGCCGGGAAACCCGAGAGT < 41bp 0.488416567333661 0.797173823217042 NA NA prediction 0.594347646434085 Functional Gain - TCF21 ENSG00000118526 CDS Human antisense chr6:134212866 chr6:134212865 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13891 0 0 0 0 2 TCF21 chr6:134212948 5'GT 134212948 Upstream 84bp 13347 chr6 117846586 117846586 1 + G T HNSC 117846587 + 117846567 117846607 41 TTCTGGGAATATGGTAGATGGATATAGAGATGTAAGTAATT TTCTGGGAATATGGTAGATTGATATAGAGATGTAAGTAATT < 41bp 0.518752548101355 0.815919743364135 NA NA prediction 0.59433439052556 Functional Gain - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117846587 chr6:117846586 stopgain 0.996 1 20 hm7G_associated_SNPs_13892 0 0 1 0 2 DCBLD1 chr6:117846525 3'AG 117846525 Downstream 62bp 13348 chr6 117846586 117846586 1 + G T HNSC 117846587 + 117846567 117846607 41 TTCTGGGAATATGGTAGATGGATATAGAGATGTAAGTAATT TTCTGGGAATATGGTAGATTGATATAGAGATGTAAGTAATT < 41bp 0.518752548101355 0.815919743364135 NA NA prediction 0.59433439052556 Functional Gain - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117846587 chr6:117846586 stopgain 0.996 1 20 hm7G_associated_SNPs_13892 0 0 1 0 2 DCBLD1 chr6:117846597 5'GT 117846597 Upstream 12bp 13349 chrX 153496193 153496193 1 + G T LUAD 153496194 + 153496174 153496214 41 CTTTGATGGCTGCCCTGCCGGCCTTCTTTGCCAAAAGTGCC CTTTGATGGCTGCCCTGCCTGCCTTCTTTGCCAAAAGTGCC < 41bp 0.536894021586636 0.834056995094453 NA NA prediction 0.594325947015635 Functional Gain - OPN1MW;OPN1MW2;OPN1MW3 ENSG00000166160 CDS Human protein_coding chrX:153496194 chrX:153496193 synonymous SNV . 0 20 hm7G_associated_SNPs_13893 0 0 0 0 1 OPN1MW;OPN1MW2;OPN1MW3 chrX:153496256 5'GT 153496256 Upstream 64bp 13350 chr19 40698547 40698547 1 + G T SKCM 40698548 + 40698528 40698568 41 TCAACTGGGCTGTGCAGGTGGCCCGGGGCATGAACTACCTA TCAACTGGGCTGTGCAGGTTGCCCGGGGCATGAACTACCTA < 41bp 0.484622368593386 0.797156537994277 NA NA prediction 0.594313075988555 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40698548 chr19:40698547 synonymous SNV . 0 20 hm7G_associated_SNPs_13894 0 0 1 0 1 MAP3K10 chr19:40698620 5'GT 40698620 Upstream 74bp 13351 chr9 139872093 139872093 1 + G T COAD 139872094 + 139872074 139872114 41 GGGTGCTGGGCGACCTGCAGGCAGCACCGGAGGCCCAGGTC GGGTGCTGGGCGACCTGCATGCAGCACCGGAGGCCCAGGTC < 41bp 0.536528759366187 0.83368136315866 NA NA prediction 0.594305207584945 Functional Gain - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139872094 chr9:139872093 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_13896 0 0 1 0 1 PTGDS chr9:139872144 5'GT 139872144 Upstream 52bp 13352 chr18 31312004 31312004 1 + G T UCEC 31312005 + 31311985 31312025 41 CTTTGCATATGCAGCACAAGGGTGGAAACAGCGACTGGCAG CTTTGCATATGCAGCACAATGGTGGAAACAGCGACTGGCAG < 41bp 0.492530057644286 0.797150114604524 NA NA prediction 0.594300229209048 Functional Gain - ASXL3 ENSG00000141431 CDS Human protein_coding chr18:31312005 chr18:31312004 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13897 0 0 0 0 2 ASXL3 chr18:31311932 3'AG 31311932 Downstream 73bp 13353 chr18 31312004 31312004 1 + G T UCEC 31312005 + 31311985 31312025 41 CTTTGCATATGCAGCACAAGGGTGGAAACAGCGACTGGCAG CTTTGCATATGCAGCACAATGGTGGAAACAGCGACTGGCAG < 41bp 0.492530057644286 0.797150114604524 NA NA prediction 0.594300229209048 Functional Gain - ASXL3 ENSG00000141431 CDS Human protein_coding chr18:31312005 chr18:31312004 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13897 0 0 0 0 2 ASXL3 chr18:31312028 5'GT 31312028 Upstream 25bp 13354 chr3 10276286 10276286 1 + G T UCEC 10276287 + 10276267 10276307 41 TTCCGGAGGACTGCGCCGAGGCCCTGGCCACGGCTGCCTGC TTCCGGAGGACTGCGCCGATGCCCTGGCCACGGCTGCCTGC < 41bp 0.544242885705141 0.841375923663632 NA NA prediction 0.594266075916982 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10276287 chr3:10276286 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_13899 0 0 0 0 1 IRAK2 chr3:10276343 5'GT 10276343 Upstream 58bp 13355 chr11 93819195 93819195 1 + G T BRCA 93819196 + 93819176 93819216 41 GCTTAAACATGTGTAAAAGGGATAGAGTTTCCTGGCATCTG GCTTAAACATGTGTAAAAGTGATAGAGTTTCCTGGCATCTG < 41bp 0.507974810245739 0.80508982286168 NA NA prediction 0.594230025231883 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93819196 chr11:93819195 nonsynonymous SNV 0.965 2 20 hm7G_associated_SNPs_13901 0 0 0 0 1 HEPHL1 chr11:93819143 3'AG 93819143 Downstream 53bp 13356 chr20 36962846 36962846 1 + G T LUSC 36962847 + 36962827 36962867 41 TCCAGGTTGAATTGCTGCAGGATATCATGAACTACATTGTA TCCAGGTTGAATTGCTGCATGATATCATGAACTACATTGTA < 41bp 0.498915759562366 0.797113729447305 NA NA prediction 0.59422745889461 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36962847 chr20:36962846 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_13902 0 0 0 0 2 BPI chr20:36962832 3'AG 36962832 Downstream 15bp 13357 chr20 36962846 36962846 1 + G T LUSC 36962847 + 36962827 36962867 41 TCCAGGTTGAATTGCTGCAGGATATCATGAACTACATTGTA TCCAGGTTGAATTGCTGCATGATATCATGAACTACATTGTA < 41bp 0.498915759562366 0.797113729447305 NA NA prediction 0.59422745889461 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36962847 chr20:36962846 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_13902 0 0 0 0 2 BPI chr20:36962895 5'GT 36962895 Upstream 50bp 13358 chr19 19344697 19344697 1 + G T LUAD 19344698 + 19344678 19344718 41 TGTGATCAGGGCTTCGCCGGGGAGAACTGTGAGATTGGTGA TGTGATCAGGGCTTCGCCGTGGAGAACTGTGAGATTGGTGA < 41bp 0.536244809136464 0.833357003285905 NA NA prediction 0.594224388298884 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19344698 chr19:19344697 nonsynonymous SNV 0.722 4 20 hm7G_associated_SNPs_13903 0 0 0 0 2 NCAN chr19:19344598 3'AG 19344598 Downstream 100bp 13359 chr19 19344697 19344697 1 + G T LUAD 19344698 + 19344678 19344718 41 TGTGATCAGGGCTTCGCCGGGGAGAACTGTGAGATTGGTGA TGTGATCAGGGCTTCGCCGTGGAGAACTGTGAGATTGGTGA < 41bp 0.536244809136464 0.833357003285905 NA NA prediction 0.594224388298884 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19344698 chr19:19344697 nonsynonymous SNV 0.722 4 20 hm7G_associated_SNPs_13903 0 0 0 0 2 NCAN chr19:19344714 5'GT 19344714 Upstream 18bp 13360 chr1 207872577 207872577 1 + G T ESCA 207872578 + 207872558 207872598 41 TAGTTACTGTGTTTTGGCTGGAATGGAAAGCCTTTGGAATA TAGTTACTGTGTTTTGGCTTGAATGGAAAGCCTTTGGAATA < 41bp 0.49822510658096 0.797108303831893 NA NA prediction 0.594216607663786 Functional Gain - CR1L ENSG00000197721 CDS Human protein_coding chr1:207872578 chr1:207872577 stopgain 0.011 0 20 hm7G_associated_SNPs_13904 0 0 1 0 2 CR1L chr1:207872534 3'AG 207872534 Downstream 44bp 13361 chr1 207872577 207872577 1 + G T ESCA 207872578 + 207872558 207872598 41 TAGTTACTGTGTTTTGGCTGGAATGGAAAGCCTTTGGAATA TAGTTACTGTGTTTTGGCTTGAATGGAAAGCCTTTGGAATA < 41bp 0.49822510658096 0.797108303831893 NA NA prediction 0.594216607663786 Functional Gain - CR1L ENSG00000197721 CDS Human protein_coding chr1:207872578 chr1:207872577 stopgain 0.011 0 20 hm7G_associated_SNPs_13904 0 0 1 0 2 CR1L chr1:207872619 5'GT 207872619 Upstream 43bp 13362 chr4 90830530 90830530 1 + G T LUSC 90830531 + 90830511 90830551 41 ACCTTGTGGCTGGACCGGTGGATCCTGTCCTCAGAGGTATG ACCTTGTGGCTGGACCGGTTGATCCTGTCCTCAGAGGTATG < 41bp 0.519798022814451 0.816902626883088 NA NA prediction 0.594209208137275 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90830531 chr4:90830530 stopgain 0.924 0 20 hm7G_associated_SNPs_13905 0 0 0 0 1 MMRN1 chr4:90830546 5'GT 90830546 Upstream 17bp 13363 chr11 9530362 9530362 1 + G T UCEC 9530363 + 9530343 9530383 41 ACACTGAGCCCATCGAGGAGGAGCAGGAAGCCTTCTTTGAG ACACTGAGCCCATCGAGGATGAGCAGGAAGCCTTCTTTGAG < 41bp 0.510468966824456 0.807572153798557 NA NA prediction 0.594206373948202 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9530363 chr11:9530362 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_13906 0 0 0 0 1 ZNF143 chr11:9530393 5'GT 9530393 Upstream 32bp 13364 chr3 186917353 186917353 1 + G T THCA 186917354 + 186917334 186917374 41 CGCAGGTTCCACTGCTCCTGGTGCTGGCACACCTGGCAGTC CGCAGGTTCCACTGCTCCTTGTGCTGGCACACCTGGCAGTC < 41bp 0.513692819461746 0.81075693344284 NA NA prediction 0.594128227962188 Functional Gain - RTP1 ENSG00000175077 CDS Human protein_coding chr3:186917354 chr3:186917353 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_13908 0 0 0 0 1 RTP1 chr3:186917339 3'AG 186917339 Downstream 15bp 13365 chr12 121001191 121001191 1 + G T UCEC 121001192 + 121001172 121001212 41 CCTTCGATGAAGAAACCACGGAAGTTTGTTCTCTGGACACT CCTTCGATGAAGAAACCACTGAAGTTTGTTCTCTGGACACT < 41bp 0.54465337799939 0.841715224156399 NA NA prediction 0.594123692314018 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121001192 chr12:121001191 synonymous SNV . 0 20 hm7G_associated_SNPs_13909 0 0 1 1 1 RNF10 chr12:121001150 3'AG 121001150 Downstream 42bp 13366 chr12 97334248 97334248 1 + G T LUAD 97334249 + 97334229 97334269 41 CAGACAGTGGAAAAAATCAGGATTTCTCCAGCTTTGATGAT CAGACAGTGGAAAAAATCATGATTTCTCCAGCTTTGATGAT < 41bp 0.496834271552568 0.797061131507018 NA NA prediction 0.594122263014037 Functional Gain - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97334249 chr12:97334248 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13910 0 0 1 0 2 NEDD1 chr12:97334187 3'AG 97334187 Downstream 62bp 13367 chr12 97334248 97334248 1 + G T LUAD 97334249 + 97334229 97334269 41 CAGACAGTGGAAAAAATCAGGATTTCTCCAGCTTTGATGAT CAGACAGTGGAAAAAATCATGATTTCTCCAGCTTTGATGAT < 41bp 0.496834271552568 0.797061131507018 NA NA prediction 0.594122263014037 Functional Gain - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97334249 chr12:97334248 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13910 0 0 1 0 2 NEDD1 chr12:97334315 5'GT 97334315 Upstream 68bp 13368 chr9 139641933 139641933 1 - C A rs73554091 139641932 - 139641912 139641952 41 GACATGAAGAACGTCGTGGGGGTGGTGGTGACCCTCACTCC GACATGAAGAACGTCGTGGTGGTGGTGGTGACCCTCACTCC < 41bp 0.537314966648183 0.834335685884861 NA NA prediction 0.594041438473356 Functional Gain - LCN6 ENSG00000204003;ENSG00000267206 CDS Human other chr9:139641932 chr9:139641933 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_13913 0 0 0 0 2 LCN6 chr9:139641876 5'GT 139641876 Upstream 58bp 13369 chr9 139641933 139641933 1 - C A rs73554091 139641932 - 139641912 139641952 41 GACATGAAGAACGTCGTGGGGGTGGTGGTGACCCTCACTCC GACATGAAGAACGTCGTGGTGGTGGTGGTGACCCTCACTCC < 41bp 0.537314966648183 0.834335685884861 NA NA prediction 0.594041438473356 Functional Gain - LCN6 ENSG00000204003;ENSG00000267206 CDS Human other chr9:139641932 chr9:139641933 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_13913 0 0 0 0 2 LCN6 chr9:139642015 3'AG 139642015 Downstream 83bp 13370 chr11 117984017 117984017 1 + G T LUAD 117984018 + 117983998 117984038 41 TGTTCAACTGGAAGGTGCGGGCAGGCTCAGACAAACTGGGC TGTTCAACTGGAAGGTGCGTGCAGGCTCAGACAAACTGGGC < 41bp 0.530653147783717 0.827669966129218 NA NA prediction 0.594033636691002 Functional Gain - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117984018 chr11:117984017 synonymous SNV . 0 20 hm7G_associated_SNPs_13914 0 0 0 0 1 TMPRSS4 chr11:117983984 3'AG 117983984 Downstream 34bp 13371 chr15 91432605 91432605 1 + G T LUAD 91432606 + 91432586 91432626 41 AGGTGGTGGCCATTCACCGGGAGATGGCTGCAGCTGCTGCC AGGTGGTGGCCATTCACCGTGAGATGGCTGCAGCTGCTGCC < 41bp 0.463704080764549 0.797005314320984 NA NA prediction 0.594010628641968 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91432606 chr15:91432605 synonymous SNV . 0 20 hm7G_associated_SNPs_13915 0 0 0 0 2 FES chr15:91432536 3'AG 91432536 Downstream 70bp 13372 chr15 91432605 91432605 1 + G T LUAD 91432606 + 91432586 91432626 41 AGGTGGTGGCCATTCACCGGGAGATGGCTGCAGCTGCTGCC AGGTGGTGGCCATTCACCGTGAGATGGCTGCAGCTGCTGCC < 41bp 0.463704080764549 0.797005314320984 NA NA prediction 0.594010628641968 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91432606 chr15:91432605 synonymous SNV . 0 20 hm7G_associated_SNPs_13915 0 0 0 0 2 FES chr15:91432673 5'GT 91432673 Upstream 69bp 13373 chr1 156617830 156617830 1 + G T LUAD 156617831 + 156617811 156617851 41 AGACATGGATGGCTTCCCCGGGGTCCGGAACTATGGTGTGG AGACATGGATGGCTTCCCCTGGGTCCGGAACTATGGTGTGG < 41bp 0.465148478742198 0.796991423065752 NA NA prediction 0.593982846131504 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617831 chr1:156617830 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_13916 0 0 0 0 2 BCAN chr1:156617775 3'AG 156617775 Downstream 56bp 13374 chr1 156617830 156617830 1 + G T LUAD 156617831 + 156617811 156617851 41 AGACATGGATGGCTTCCCCGGGGTCCGGAACTATGGTGTGG AGACATGGATGGCTTCCCCTGGGTCCGGAACTATGGTGTGG < 41bp 0.465148478742198 0.796991423065752 NA NA prediction 0.593982846131504 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617831 chr1:156617830 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_13916 0 0 0 0 2 BCAN chr1:156617902 5'GT 156617902 Upstream 73bp 13375 chr2 75094848 75094848 1 + G T UCEC 75094849 + 75094829 75094869 41 CGGACAATGGGCTCCAGAAGGTGGAGATGGAGAATCAGATC CGGACAATGGGCTCCAGAATGTGGAGATGGAGAATCAGATC < 41bp 0.487544956415138 0.796987654756838 NA NA prediction 0.593975309513677 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75094849 chr2:75094848 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_13917 0 0 1 0 2 HK2 chr2:75094763 3'AG 75094763 Downstream 86bp 13376 chr2 75094848 75094848 1 + G T UCEC 75094849 + 75094829 75094869 41 CGGACAATGGGCTCCAGAAGGTGGAGATGGAGAATCAGATC CGGACAATGGGCTCCAGAATGTGGAGATGGAGAATCAGATC < 41bp 0.487544956415138 0.796987654756838 NA NA prediction 0.593975309513677 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75094849 chr2:75094848 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_13917 0 0 1 0 2 HK2 chr2:75094911 5'GT 75094911 Upstream 64bp 13377 chr3 197687130 197687130 1 + G T OV 197687131 + 197687111 197687151 41 CCGAAGATGGCGGCCGAATGGGGCGGAGGAGTGGGTTACTC CCGAAGATGGCGGCCGAATTGGGCGGAGGAGTGGGTTACTC < 41bp 0.502659033580678 0.799619111708783 NA NA prediction 0.59392015625621 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197687131 chr3:197687130 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_13920 0 0 0 0 1 LMLN chr3:197687190 5'GT 197687190 Upstream 61bp 13378 chr4 169846138 169846138 1 + G T SKCM 169846139 + 169846119 169846159 41 ACATCTGCCTGCTCATTCAGGGAGCCACAAAAGAAGATGCT ACATCTGCCTGCTCATTCATGGAGCCACAAAAGAAGATGCT < 41bp 0.487102560672852 0.79695194344732 NA NA prediction 0.59390388689464 Functional Gain - PALLD ENSG00000129116 CDS Human protein_coding chr4:169846139 chr4:169846138 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_13921 0 0 0 0 2 PALLD chr4:169846096 3'AG 169846096 Downstream 43bp 13379 chr4 169846138 169846138 1 + G T SKCM 169846139 + 169846119 169846159 41 ACATCTGCCTGCTCATTCAGGGAGCCACAAAAGAAGATGCT ACATCTGCCTGCTCATTCATGGAGCCACAAAAGAAGATGCT < 41bp 0.487102560672852 0.79695194344732 NA NA prediction 0.59390388689464 Functional Gain - PALLD ENSG00000129116 CDS Human protein_coding chr4:169846139 chr4:169846138 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_13921 0 0 0 0 2 PALLD chr4:169846229 5'GT 169846229 Upstream 92bp 13380 chr11 992645 992645 1 + G T COAD 992646 + 992626 992666 41 ATTCAGATCGTCATCAACCGGGACGACGTGCAGGGCTACGC ATTCAGATCGTCATCAACCTGGACGACGTGCAGGGCTACGC < 41bp 0.542448945593302 0.83937124207472 NA NA prediction 0.593844592962837 Functional Gain - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:992646 chr11:992645 nonsynonymous SNV 0.859 2 20 hm7G_associated_SNPs_13922 0 0 1 0 1 AP2A2 chr11:992685 5'GT 992685 Upstream 41bp 13381 chr1 76272757 76272757 1 + G T LUAD 76272758 + 76272738 76272778 41 CCAGAGGTGAAATAGGAATGGCAAGTATTGATTTAAAAAAC CCAGAGGTGAAATAGGAATTGCAAGTATTGATTTAAAAAAC < 41bp 0.49775483408207 0.796917855211955 NA NA prediction 0.593835710423909 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76272758 chr1:76272757 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13923 0 0 0 0 2 MSH4 chr1:76272666 3'AG 76272666 Downstream 92bp 13382 chr1 76272757 76272757 1 + G T LUAD 76272758 + 76272738 76272778 41 CCAGAGGTGAAATAGGAATGGCAAGTATTGATTTAAAAAAC CCAGAGGTGAAATAGGAATTGCAAGTATTGATTTAAAAAAC < 41bp 0.49775483408207 0.796917855211955 NA NA prediction 0.593835710423909 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76272758 chr1:76272757 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_13923 0 0 0 0 2 MSH4 chr1:76272826 5'GT 76272826 Upstream 70bp 13383 chr20 62729200 62729200 1 + G T LUAD 62729201 + 62729181 62729221 41 ATATTTACATCTTTAACCTGGCCCTGGCCGACACTCTGGTC ATATTTACATCTTTAACCTTGCCCTGGCCGACACTCTGGTC < 41bp 0.552521980756498 0.849431127244611 NA NA prediction 0.593818292976226 Functional Gain - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62729201 chr20:62729200 synonymous SNV . 0 20 hm7G_associated_SNPs_13924 0 0 0 0 1 OPRL1 chr20:62729155 3'AG 62729155 Downstream 46bp 13384 chr2 209315501 209315501 1 + G T LUAD 209315502 + 209315482 209315522 41 GCAGCATTTGTTGCAGCATGGGCTGTGGCACGAGCAACTCT GCAGCATTTGTTGCAGCATTGGCTGTGGCACGAGCAACTCT < 41bp 0.515879849238769 0.812786018545147 NA NA prediction 0.593812338612756 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209315502 chr2:209315501 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_13926 0 0 0 0 1 PTH2R chr2:209315534 5'GT 209315534 Upstream 34bp 13385 chr14 32295860 32295860 1 + G T LAML 32295861 + 32295841 32295881 41 TGATTGTCTCCACGCCCCAGGACATCGCATTGATGGATGCA TGATTGTCTCCACGCCCCATGACATCGCATTGATGGATGCA < 41bp 0.526891026626269 0.823780555799562 NA NA prediction 0.593779058346586 Functional Gain - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32295861 chr14:32295860 nonsynonymous SNV 0.398 3 20 hm7G_associated_SNPs_13927 0 0 1 0 2 NUBPL chr14:32295835 3'AG 32295835 Downstream 26bp 13386 chr14 32295860 32295860 1 + G T LAML 32295861 + 32295841 32295881 41 TGATTGTCTCCACGCCCCAGGACATCGCATTGATGGATGCA TGATTGTCTCCACGCCCCATGACATCGCATTGATGGATGCA < 41bp 0.526891026626269 0.823780555799562 NA NA prediction 0.593779058346586 Functional Gain - NUBPL ENSG00000151413 CDS Human protein_coding chr14:32295861 chr14:32295860 nonsynonymous SNV 0.398 3 20 hm7G_associated_SNPs_13927 0 0 1 0 2 NUBPL chr14:32295920 5'GT 32295920 Upstream 61bp 13387 chr11 1099771 1099771 1 + G T LUAD 1099772 + 1099752 1099792 41 CCCTCTTCCTAGGCTGTGTGGGACCTGACAATGTGCCCAGA CCCTCTTCCTAGGCTGTGTTGGACCTGACAATGTGCCCAGA < 41bp 0.500791548947478 0.797672709021108 NA NA prediction 0.593762320147259 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1099772 chr11:1099771 synonymous SNV . 0 20 hm7G_associated_SNPs_13928 0 0 0 0 2 MUC2 chr11:1099764 3'AG 1099764 Downstream 8bp 13388 chr11 1099771 1099771 1 + G T LUAD 1099772 + 1099752 1099792 41 CCCTCTTCCTAGGCTGTGTGGGACCTGACAATGTGCCCAGA CCCTCTTCCTAGGCTGTGTTGGACCTGACAATGTGCCCAGA < 41bp 0.500791548947478 0.797672709021108 NA NA prediction 0.593762320147259 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1099772 chr11:1099771 synonymous SNV . 0 20 hm7G_associated_SNPs_13928 0 0 0 0 2 MUC2 chr11:1099795 5'GT 1099795 Upstream 25bp 13389 chr4 152201058 152201058 1 + G T CESC 152201059 + 152201039 152201079 41 CCACAACTTTATCTGTGGAGGTTCCCTCGTCAGTGAGAGGT CCACAACTTTATCTGTGGATGTTCCCTCGTCAGTGAGAGGT < 41bp 0.51442073441715 0.811282930643783 NA NA prediction 0.593724392453266 Functional Gain - PRSS48 ENSG00000189099 CDS Human protein_coding chr4:152201059 chr4:152201058 nonsynonymous SNV 0.850 3 20 hm7G_associated_SNPs_13930 0 0 0 0 1 PRSS48 chr4:152201110 5'GT 152201110 Upstream 53bp 13390 chr7 101187286 101187286 1 + G T CESC 101187287 + 101187267 101187307 41 TTCTCTCCCCAGGGCCCCCGGGGCAGACAGGACCACCAGGG TTCTCTCCCCAGGGCCCCCTGGGCAGACAGGACCACCAGGG < 41bp 0.523067695216864 0.819896445467664 NA NA prediction 0.593657500501601 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101187287 chr7:101187286 synonymous SNV . 0 20 hm7G_associated_SNPs_13931 0 0 1 0 2 COL26A1 chr7:101187279 3'AG 101187279 Downstream 8bp 13391 chr7 101187286 101187286 1 + G T CESC 101187287 + 101187267 101187307 41 TTCTCTCCCCAGGGCCCCCGGGGCAGACAGGACCACCAGGG TTCTCTCCCCAGGGCCCCCTGGGCAGACAGGACCACCAGGG < 41bp 0.523067695216864 0.819896445467664 NA NA prediction 0.593657500501601 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101187287 chr7:101187286 synonymous SNV . 0 20 hm7G_associated_SNPs_13931 0 0 1 0 2 COL26A1 chr7:101187377 5'GT 101187377 Upstream 92bp 13392 chr16 84474476 84474476 1 + G T SARC 84474477 + 84474457 84474497 41 CTGCAGGTCAGCGGAGTTGGGTATGACGGTCAAGGGACTGT CTGCAGGTCAGCGGAGTTGTGTATGACGGTCAAGGGACTGT < 41bp 0.531282892375011 0.828101459889185 NA NA prediction 0.593637135028347 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84474477 chr16:84474476 nonsynonymous SNV 0.780 4 20 hm7G_associated_SNPs_13934 0 0 0 0 2 ATP2C2 chr16:84474463 3'AG 84474463 Downstream 14bp 13393 chr16 84474476 84474476 1 + G T SARC 84474477 + 84474457 84474497 41 CTGCAGGTCAGCGGAGTTGGGTATGACGGTCAAGGGACTGT CTGCAGGTCAGCGGAGTTGTGTATGACGGTCAAGGGACTGT < 41bp 0.531282892375011 0.828101459889185 NA NA prediction 0.593637135028347 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84474477 chr16:84474476 nonsynonymous SNV 0.780 4 20 hm7G_associated_SNPs_13934 0 0 0 0 2 ATP2C2 chr16:84474564 5'GT 84474564 Upstream 89bp 13394 chr9 71851948 71851948 1 + G T LGG 71851949 + 71851929 71851969 41 TGGAGAATGCGTGGCCAGAGGTCTGGGGTGAAGAAGAACCT TGGAGAATGCGTGGCCAGATGTCTGGGGTGAAGAAGAACCT < 41bp 0.479655425318768 0.796818011063502 NA NA prediction 0.593636022127005 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851949 chr9:71851948 nonsynonymous SNV 0.896 4 20 hm7G_associated_SNPs_13935 0 0 1 0 1 TJP2 chr9:71851865 3'AG 71851865 Downstream 84bp 13395 chr11 61511088 61511088 1 + G T STAD 61511089 + 61511069 61511109 41 TTGCGGCGGCGGCCCGCCAGGACCCGGTGGAGCTGCTGCTG TTGCGGCGGCGGCCCGCCATGACCCGGTGGAGCTGCTGCTG < 41bp 0.523124744602521 0.819935047172597 NA NA prediction 0.593620605140151 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61511089 chr11:61511088 nonsynonymous SNV 0.786 1 20 hm7G_associated_SNPs_13937 0 0 0 0 1 DAGLA chr11:61511004 3'AG 61511004 Downstream 85bp 13396 chr17 46024064 46024064 1 + G T LUSC 46024065 + 46024045 46024085 41 ACCGGATAGTCTTTCGGCGGGGCCTACCCACAGGAGATTCC ACCGGATAGTCTTTCGGCGTGGCCTACCCACAGGAGATTCC < 41bp 0.507888168580598 0.804694970156309 NA NA prediction 0.593613603151423 Functional Gain - PNPO ENSG00000108439 CDS Human protein_coding chr17:46024065 chr17:46024064 synonymous SNV . 0 20 hm7G_associated_SNPs_13938 0 0 1 0 1 PNPO chr17:46023980 3'AG 46023980 Downstream 85bp 13397 chr17 34934491 34934491 1 + G T UCEC 34934492 + 34934472 34934512 41 TTGACTGCAGCAAAGAAAAGGGCTACTGTGCTGCACTTTAT TTGACTGCAGCAAAGAAAATGGCTACTGTGCTGCACTTTAT < 41bp 0.484507562379406 0.796801574842837 NA NA prediction 0.593603149685675 Functional Gain - GGNBP2 ENSG00000005955 CDS Human other chr17:34934492 chr17:34934491 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_13939 0 0 1 0 1 GGNBP2 chr17:34934413 3'AG 34934413 Downstream 79bp 13398 chr17 73570746 73570746 1 + G T UCEC 73570747 + 73570727 73570767 41 GTGCAGCCTCAGCAATGGCGGAGGTGGGGGCTCTGGGCTTG GTGCAGCCTCAGCAATGGCTGAGGTGGGGGCTCTGGGCTTG < 41bp 0.516525516965558 0.813326741778158 NA NA prediction 0.5936024496252 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73570747 chr17:73570746 stopgain 0.995 0 20 hm7G_associated_SNPs_13940 0 0 1 0 2 LLGL2 chr17:73570691 3'AG 73570691 Downstream 56bp 13399 chr17 73570746 73570746 1 + G T UCEC 73570747 + 73570727 73570767 41 GTGCAGCCTCAGCAATGGCGGAGGTGGGGGCTCTGGGCTTG GTGCAGCCTCAGCAATGGCTGAGGTGGGGGCTCTGGGCTTG < 41bp 0.516525516965558 0.813326741778158 NA NA prediction 0.5936024496252 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73570747 chr17:73570746 stopgain 0.995 0 20 hm7G_associated_SNPs_13940 0 0 1 0 2 LLGL2 chr17:73570749 5'GT 73570749 Upstream 4bp 13400 chr10 99504558 99504558 1 + G T LUAD 99504559 + 99504539 99504579 41 TACCTTCAGGAGGTTTGCCGGGCACGGCTGCCTGATTCCGA TACCTTCAGGAGGTTTGCCTGGCACGGCTGCCTGATTCCGA < 41bp 0.484188082895909 0.796798685046083 NA NA prediction 0.593597370092165 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99504559 chr10:99504558 nonsynonymous SNV 0.949 1 20 hm7G_associated_SNPs_13941 0 0 1 0 1 ZFYVE27 chr10:99504486 3'AG 99504486 Downstream 73bp 13401 chr16 10992790 10992790 1 + G T UCEC 10992791 + 10992771 10992811 41 TCTCAAAGTAGAGCACATAGGACCAGATGAAGTGATCGGTG TCTCAAAGTAGAGCACATATGACCAGATGAAGTGATCGGTG < 41bp 0.481022971458189 0.796783727433423 NA NA prediction 0.593567454866846 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10992791 chr16:10992790 stopgain 0.948 0 20 hm7G_associated_SNPs_13943 0 0 0 0 3 CIITA chr16:10992779 3'AG 10992779 Downstream 12bp 13402 chr16 10992790 10992790 1 + G T UCEC 10992791 + 10992771 10992811 41 TCTCAAAGTAGAGCACATAGGACCAGATGAAGTGATCGGTG TCTCAAAGTAGAGCACATATGACCAGATGAAGTGATCGGTG < 41bp 0.481022971458189 0.796783727433423 NA NA prediction 0.593567454866846 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10992791 chr16:10992790 stopgain 0.948 0 20 hm7G_associated_SNPs_13943 0 0 0 0 3 CIITA chr16:10992782 3'AG 10992782 Downstream 9bp 13403 chr16 10992790 10992790 1 + G T UCEC 10992791 + 10992771 10992811 41 TCTCAAAGTAGAGCACATAGGACCAGATGAAGTGATCGGTG TCTCAAAGTAGAGCACATATGACCAGATGAAGTGATCGGTG < 41bp 0.481022971458189 0.796783727433423 NA NA prediction 0.593567454866846 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10992791 chr16:10992790 stopgain 0.948 0 20 hm7G_associated_SNPs_13943 0 0 0 0 3 CIITA chr16:10992859 5'GT 10992859 Upstream 70bp 13404 chr5 139216501 139216501 1 + G T LUAD 139216502 + 139216482 139216522 41 ATGGTGGCAACCCCTTCCTGGATGTCCCACAGGCGCTCAGT ATGGTGGCAACCCCTTCCTTGATGTCCCACAGGCGCTCAGT < 41bp 0.469709463204878 0.796776398688001 NA NA prediction 0.593552797376002 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216502 chr5:139216501 synonymous SNV . 0 20 hm7G_associated_SNPs_13945 0 0 0 0 1 PSD2 chr5:139216586 5'GT 139216586 Upstream 86bp 13405 chr17 26817514 26817514 1 + G T LUAD 26817515 + 26817495 26817535 41 CTCCAACCTCCTGTTCTTCGGGGGGCTGCTGGTGGCCATCG CTCCAACCTCCTGTTCTTCTGGGGGCTGCTGGTGGCCATCG < 41bp 0.545123236796676 0.841887408396327 NA NA prediction 0.5935283431993 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26817515 chr17:26817514 nonsynonymous SNV 0.910 4 20 hm7G_associated_SNPs_13946 0 0 0 0 2 SLC13A2 chr17:26817472 3'AG 26817472 Downstream 43bp 13406 chr17 26817514 26817514 1 + G T LUAD 26817515 + 26817495 26817535 41 CTCCAACCTCCTGTTCTTCGGGGGGCTGCTGGTGGCCATCG CTCCAACCTCCTGTTCTTCTGGGGGCTGCTGGTGGCCATCG < 41bp 0.545123236796676 0.841887408396327 NA NA prediction 0.5935283431993 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26817515 chr17:26817514 nonsynonymous SNV 0.910 4 20 hm7G_associated_SNPs_13946 0 0 0 0 2 SLC13A2 chr17:26817608 5'GT 26817608 Upstream 95bp 13407 chr20 58416547 58416547 1 + G T UCEC 58416548 + 58416528 58416568 41 AAAGCGCAGGACTATGACAGGAGGGCAGACAAACCCTGGAC AAAGCGCAGGACTATGACATGAGGGCAGACAAACCCTGGAC < 41bp 0.503186065431554 0.799948630500626 NA NA prediction 0.593525130138143 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58416548 chr20:58416547 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13947 0 0 0 0 2 PHACTR3 chr20:58416450 3'AG 58416450 Downstream 98bp 13408 chr20 58416547 58416547 1 + G T UCEC 58416548 + 58416528 58416568 41 AAAGCGCAGGACTATGACAGGAGGGCAGACAAACCCTGGAC AAAGCGCAGGACTATGACATGAGGGCAGACAAACCCTGGAC < 41bp 0.503186065431554 0.799948630500626 NA NA prediction 0.593525130138143 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58416548 chr20:58416547 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13947 0 0 0 0 2 PHACTR3 chr20:58416590 5'GT 58416590 Upstream 44bp 13409 chr19 11024579 11024579 1 + G T CESC 11024580 + 11024560 11024600 41 TGAAGAGTAACAACCTGACGGACCGCATCGTGGTCATCCCG TGAAGAGTAACAACCTGACTGACCGCATCGTGGTCATCCCG < 41bp 0.468750494695848 0.796747916250938 NA NA prediction 0.593495832501876 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11024580 chr19:11024579 synonymous SNV . 0 20 hm7G_associated_SNPs_13949 0 0 1 0 1 CARM1 chr19:11024553 3'AG 11024553 Downstream 27bp 13410 chr19 50983931 50983931 1 + G T LIHC 50983932 + 50983912 50983952 41 GTCGGTGGTGACGCACCCCGGGGGCTGCCGGGGCCATGAGG GTCGGTGGTGACGCACCCCTGGGGCTGCCGGGGCCATGAGG < 41bp 0.546126108565668 0.842865009364047 NA NA prediction 0.593477801596756 Functional Gain - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50983932 chr19:50983931 nonsynonymous SNV 0.740 4 20 hm7G_associated_SNPs_13951 0 0 0 0 1 EMC10 chr19:50983838 3'AG 50983838 Downstream 94bp 13411 chr17 41365208 41365208 1 + G T UCEC 41365209 + 41365189 41365229 41 TTCCTGTGTGCCTTGTGAAGGAACTGCTGATGCCAGCTTCG TTCCTGTGTGCCTTGTGAATGAACTGCTGATGCCAGCTTCG < 41bp 0.475288111411609 0.796714454019049 NA NA prediction 0.593428908038098 Functional Gain - TMEM106A;TMEM106A ENSG00000184988;ENSG00000184988 exonic;splicing Human protein_coding chr17:41365209 chr17:41365208 stopgain 0.783 0 20 hm7G_associated_SNPs_13953 0 0 1 0 1 TMEM106A chr17:41365271 5'GT 41365271 Upstream 64bp 13412 chr19 35836513 35836513 1 + G T UCEC 35836514 + 35836494 35836534 41 CTCCCTCCCAGGTTAGAAGGGCCCCCCTCTCTGAAGGCCCC CTCCCTCCCAGGTTAGAAGTGCCCCCCTCTCTGAAGGCCCC < 41bp 0.479043952117338 0.796708106592083 NA NA prediction 0.593416213184165 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35836514 chr19:35836513 nonsynonymous SNV 0.049 4 20 hm7G_associated_SNPs_13954 0 0 0 0 1 CD22 chr19:35836505 3'AG 35836505 Downstream 9bp 13413 chr4 88986601 88986601 1 + G T UCEC 88986602 + 88986582 88986622 41 TTCAGAGAGTCTGCGGCAAGGAGGAGGCAAGTTAAACTTTG TTCAGAGAGTCTGCGGCAATGAGGAGGCAAGTTAAACTTTG < 41bp 0.493882279485377 0.796704501981731 NA NA prediction 0.593409003963461 Functional Gain - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88986602 chr4:88986601 stopgain 0.944 1 20 hm7G_associated_SNPs_13955 0 0 0 0 1 PKD2 chr4:88986526 3'AG 88986526 Downstream 76bp 13414 chr6 35261554 35261554 1 + G T UCEC 35261555 + 35261535 35261575 41 TGTCCCCGGAAGACCTGCAGGCCCTGGGGAGTGCCATCAGT TGTCCCCGGAAGACCTGCATGCCCTGGGGAGTGCCATCAGT < 41bp 0.475140559628623 0.79669678027184 NA NA prediction 0.593393560543681 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35261555 chr6:35261554 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_13956 0 0 0 0 1 ZNF76 chr6:35261528 3'AG 35261528 Downstream 27bp 13415 chr3 73113183 73113183 1 + G T LUAD 73113184 + 73113164 73113204 41 AATGGGCCTGGGACACCCAGGCCACTTAATCGACCAAAGGT AATGGGCCTGGGACACCCATGCCACTTAATCGACCAAAGGT < 41bp 0.525881265456888 0.822504272442293 NA NA prediction 0.593246013970809 Functional Gain - PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113184 chr3:73113183 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13961 0 0 1 0 1 PPP4R2 chr3:73113154 3'AG 73113154 Downstream 30bp 13416 chr19 30936565 30936565 1 + G T HNSC 30936566 + 30936546 30936586 41 AACGTCACCGAGGAGAGCGGGGTCGGAGGCGGCCTCTCCCA AACGTCACCGAGGAGAGCGTGGTCGGAGGCGGCCTCTCCCA < 41bp 0.525460900214656 0.822068734857576 NA NA prediction 0.593215669285839 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936566 chr19:30936565 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13962 0 0 0 0 1 ZNF536 chr19:30936639 5'GT 30936639 Upstream 75bp 13417 chr2 27302068 27302068 1 + G T LUAD 27302069 + 27302049 27302089 41 TCAGCCCCGGGGGGCCCCAGGCCCAGATTGCCCCCCGGCCA TCAGCCCCGGGGGGCCCCATGCCCAGATTGCCCCCCGGCCA < 41bp 0.524710136299853 0.821316493623667 NA NA prediction 0.593212714647628 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27302069 chr2:27302068 nonsynonymous SNV 0.726 1 20 hm7G_associated_SNPs_13963 0 0 1 0 1 EMILIN1 chr2:27302103 5'GT 27302103 Upstream 36bp 13418 chr18 61652467 61652467 1 + G T LUSC 61652468 + 61652448 61652488 41 TGCTTCCCGATGACAACACGGACCTCGCCGTGGTAAGCTCC TGCTTCCCGATGACAACACTGACCTCGCCGTGGTAAGCTCC < 41bp 0.536404339592958 0.832980655661682 NA NA prediction 0.593152632137449 Functional Gain - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61652468 chr18:61652467 synonymous SNV . 0 20 hm7G_associated_SNPs_13965 0 0 0 0 1 SERPINB8 chr18:61652479 5'GT 61652479 Upstream 13bp 13419 chr8 145694120 145694120 1 + G T LUSC 145694121 + 145694101 145694141 41 TCTCCAGGACTTCGGGCACGGATGGCCAGCCTGCGTCAGGG TCTCCAGGACTTCGGGCACTGATGGCCAGCCTGCGTCAGGG < 41bp 0.534023268849402 0.830584819393371 NA NA prediction 0.593123101087937 Functional Gain - KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145694121 chr8:145694120 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13966 0 0 1 0 2 KIFC2 chr8:145694108 3'AG 145694108 Downstream 13bp 13420 chr8 145694120 145694120 1 + G T LUSC 145694121 + 145694101 145694141 41 TCTCCAGGACTTCGGGCACGGATGGCCAGCCTGCGTCAGGG TCTCCAGGACTTCGGGCACTGATGGCCAGCCTGCGTCAGGG < 41bp 0.534023268849402 0.830584819393371 NA NA prediction 0.593123101087937 Functional Gain - KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145694121 chr8:145694120 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_13966 0 0 1 0 2 KIFC2 chr8:145694217 5'GT 145694217 Upstream 98bp 13421 chr3 182584208 182584208 1 + G T OV 182584209 + 182584189 182584229 41 CATCTTCACCAGATGAAAAGGCTCTAGTAGAAGCTGCTGCA CATCTTCACCAGATGAAAATGCTCTAGTAGAAGCTGCTGCA < 41bp 0.524354876724838 0.820909470400704 NA NA prediction 0.593109187351732 Functional Gain - ATP11B ENSG00000058063 CDS Human protein_coding chr3:182584209 chr3:182584208 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_13967 0 0 1 0 1 ATP11B chr3:182584231 5'GT 182584231 Upstream 24bp 13422 chr2 24205881 24205881 1 + G T LUAD 24205882 + 24205862 24205902 41 TGTGTTCCAGCCCTTTTCAGGACAGGGTCACAGACTAGGAA TGTGTTCCAGCCCTTTTCATGACAGGGTCACAGACTAGGAA < 41bp 0.487344171785877 0.796544184046589 NA NA prediction 0.593088368093177 Functional Gain - UBXN2A ENSG00000173960 CDS Human protein_coding chr2:24205882 chr2:24205881 stopgain 0.998 1 20 hm7G_associated_SNPs_13968 0 0 1 2 1 UBXN2A chr2:24205903 5'GT 24205903 Upstream 23bp 13423 chr19 36120441 36120441 1 + G T SARC 36120442 + 36120422 36120462 41 GTTTGAGCAGGAAGTTCTGGGGGCTCCAGTACCTGGAATCC GTTTGAGCAGGAAGTTCTGTGGGCTCCAGTACCTGGAATCC < 41bp 0.542046370247052 0.838588238664675 NA NA prediction 0.593083736835246 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36120442 chr19:36120441 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13969 0 0 1 0 1 RBM42 chr19:36120422 3'AG 36120422 Downstream 20bp 13424 chr1 175092758 175092758 1 + G T HNSC 175092759 + 175092739 175092779 41 CACGTGTGGGCCCAGAAGGGGGCCCAGGAGAGCAAGAAGGC CACGTGTGGGCCCAGAAGGTGGCCCAGGAGAGCAAGAAGGC < 41bp 0.527588861569039 0.824127841700381 NA NA prediction 0.593077960262684 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175092759 chr1:175092758 nonsynonymous SNV 0.955 4 20 hm7G_associated_SNPs_13970 0 0 0 0 1 TNN chr1:175092799 5'GT 175092799 Upstream 42bp 13425 chr21 36081746 36081746 1 + G T UCEC 36081747 + 36081727 36081767 41 TAGATGCCTACAGCACCGAGGATGTCACTGTTTCTGGAAGG TAGATGCCTACAGCACCGATGATGTCACTGTTTCTGGAAGG < 41bp 0.47502891912064 0.796531877955178 NA NA prediction 0.593063755910357 Functional Gain - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36081747 chr21:36081746 nonsynonymous SNV 0.100 4 20 hm7G_associated_SNPs_13971 0 0 0 0 2 CLIC6 chr21:36081655 3'AG 36081655 Downstream 92bp 13426 chr21 36081746 36081746 1 + G T UCEC 36081747 + 36081727 36081767 41 TAGATGCCTACAGCACCGAGGATGTCACTGTTTCTGGAAGG TAGATGCCTACAGCACCGATGATGTCACTGTTTCTGGAAGG < 41bp 0.47502891912064 0.796531877955178 NA NA prediction 0.593063755910357 Functional Gain - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36081747 chr21:36081746 nonsynonymous SNV 0.100 4 20 hm7G_associated_SNPs_13971 0 0 0 0 2 CLIC6 chr21:36081836 5'GT 36081836 Upstream 91bp 13427 chrX 134706800 134706800 1 + G T UCEC 134706801 + 134706781 134706821 41 GAAACCTCCCCAGGAAATTGGAATTAAAGTGAAAAATCATT GAAACCTCCCCAGGAAATTTGAATTAAAGTGAAAAATCATT < 41bp 0.503412411294026 0.799932485321686 NA NA prediction 0.593040148055318 Functional Gain - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134706801 chrX:134706800 stopgain 0.998 1 20 hm7G_associated_SNPs_13972 0 0 0 0 1 INTS6L chrX:134706740 3'AG 134706740 Downstream 61bp 13428 chr12 81545804 81545804 1 + G T LUSC 81545805 + 81545785 81545825 41 GTGGGCAGCTTCTGACTTAGGCTGGGTTGTTGGACATTCCT GTGGGCAGCTTCTGACTTATGCTGGGTTGTTGGACATTCCT < 41bp 0.483480431890853 0.796508702767615 NA NA prediction 0.59301740553523 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81545805 chr12:81545804 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13974 0 0 1 0 2 ACSS3 chr12:81545780 3'AG 81545780 Downstream 25bp 13429 chr12 81545804 81545804 1 + G T LUSC 81545805 + 81545785 81545825 41 GTGGGCAGCTTCTGACTTAGGCTGGGTTGTTGGACATTCCT GTGGGCAGCTTCTGACTTATGCTGGGTTGTTGGACATTCCT < 41bp 0.483480431890853 0.796508702767615 NA NA prediction 0.59301740553523 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81545805 chr12:81545804 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13974 0 0 1 0 2 ACSS3 chr12:81545875 5'GT 81545875 Upstream 72bp 13430 chr22 51143400 51143400 1 + G T LUAD 51143401 + 51143381 51143421 41 GTCTATCCCAGGTGAACGGGGTGAACGTGGTGAAGGTCGGA GTCTATCCCAGGTGAACGGTGTGAACGTGGTGAAGGTCGGA < 41bp 0.473158955978916 0.796492898077572 NA NA prediction 0.592985796155144 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143401 chr22:51143400 synonymous SNV . 0 20 hm7G_associated_SNPs_13975 0 0 1 0 1 SHANK3 chr22:51143392 3'AG 51143392 Downstream 9bp 13431 chr4 1806089 1806089 1 + G T BLCA 1806090 + 1806070 1806110 41 GGTGGAGGCTGACGAGGCGGGCAGTGTGTATGCAGGCATCC GGTGGAGGCTGACGAGGCGTGCAGTGTGTATGCAGGCATCC < 41bp 0.545716689830984 0.842146773530584 NA NA prediction 0.592860167399202 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806090 chr4:1806089 nonsynonymous SNV 0.844 1 20 hm7G_associated_SNPs_13979 4 0 0 0 1 FGFR3 chr4:1806057 3'AG 1806057 Downstream 33bp 13432 chr10 116044681 116044681 1 + G T UCEC 116044682 + 116044662 116044702 41 TGTTCCAGAAGGACTGGACGGCTACCAGTGCCTCTGCCCGC TGTTCCAGAAGGACTGGACTGCTACCAGTGCCTCTGCCCGC < 41bp 0.547081013721613 0.843507027805367 NA NA prediction 0.592852028167508 Functional Gain - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116044682 chr10:116044681 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_13980 0 0 0 0 3 VWA2 chr10:116044622 3'AG 116044622 Downstream 60bp 13433 chr10 116044681 116044681 1 + G T UCEC 116044682 + 116044662 116044702 41 TGTTCCAGAAGGACTGGACGGCTACCAGTGCCTCTGCCCGC TGTTCCAGAAGGACTGGACTGCTACCAGTGCCTCTGCCCGC < 41bp 0.547081013721613 0.843507027805367 NA NA prediction 0.592852028167508 Functional Gain - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116044682 chr10:116044681 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_13980 0 0 0 0 3 VWA2 chr10:116044729 5'GT 116044729 Upstream 49bp 13434 chr10 116044681 116044681 1 + G T UCEC 116044682 + 116044662 116044702 41 TGTTCCAGAAGGACTGGACGGCTACCAGTGCCTCTGCCCGC TGTTCCAGAAGGACTGGACTGCTACCAGTGCCTCTGCCCGC < 41bp 0.547081013721613 0.843507027805367 NA NA prediction 0.592852028167508 Functional Gain - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116044682 chr10:116044681 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_13980 0 0 0 0 3 VWA2 chr10:116044733 5'GT 116044733 Upstream 53bp 13435 chr19 58016028 58016028 1 + G T LUAD 58016029 + 58016009 58016049 41 ACTCTGTCCATCTTAGCAGGGCTATGTGACCTTTGAGGACG ACTCTGTCCATCTTAGCAGTGCTATGTGACCTTTGAGGACG < 41bp 0.482113511944413 0.796412242023573 NA NA prediction 0.592824484047145 Functional Gain - ZNF773 ENSG00000152439;ENSG00000268107 CDS Human other chr19:58016029 chr19:58016028 nonsynonymous SNV 0.048 3 20 hm7G_associated_SNPs_13981 0 0 0 0 2 ZNF773 chr19:58016025 3'AG 58016025 Downstream 4bp 13436 chr19 58016028 58016028 1 + G T LUAD 58016029 + 58016009 58016049 41 ACTCTGTCCATCTTAGCAGGGCTATGTGACCTTTGAGGACG ACTCTGTCCATCTTAGCAGTGCTATGTGACCTTTGAGGACG < 41bp 0.482113511944413 0.796412242023573 NA NA prediction 0.592824484047145 Functional Gain - ZNF773 ENSG00000152439;ENSG00000268107 CDS Human other chr19:58016029 chr19:58016028 nonsynonymous SNV 0.048 3 20 hm7G_associated_SNPs_13981 0 0 0 0 2 ZNF773 chr19:58016028 3'AG 58016028 Downstream 1bp 13437 chr19 4950725 4950725 1 + G T LUSC 4950726 + 4950706 4950746 41 GGGTGGTGCGCAATGTCAAGGGTGGCAAGAATAGCAAGTAC GGGTGGTGCGCAATGTCAATGGTGGCAAGAATAGCAAGTAC < 41bp 0.478153478442027 0.796388825353495 NA NA prediction 0.592777650706991 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950726 chr19:4950725 . 0.007 3 20 hm7G_associated_SNPs_13985 0 0 0 0 1 UHRF1 chr19:4950785 5'GT 4950785 Upstream 61bp 13438 chr12 8618186 8618186 1 + G T PRAD 8618187 + 8618167 8618207 41 AGCAGAACTGTGTTGAGATGGGAGCACATTTGGTTGTGTTC AGCAGAACTGTGTTGAGATTGGAGCACATTTGGTTGTGTTC < 41bp 0.49164722628798 0.79638280704978 NA NA prediction 0.592765614099561 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8618187 chr12:8618186 nonsynonymous SNV 0.016 1 20 hm7G_associated_SNPs_13986 0 0 0 0 1 CLEC6A chr12:8618225 5'GT 8618225 Upstream 40bp 13439 chr5 176083133 176083133 1 + G T LUAD 176083134 + 176083114 176083154 41 CCGGCTCAAACTGGTGAGAGGGGTAGGAACCGGGCTGGGGC CCGGCTCAAACTGGTGAGATGGGTAGGAACCGGGCTGGGGC < 41bp 0.484325394083332 0.796366010509501 NA NA prediction 0.592732021019003 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083134 chr5:176083133 nonsynonymous SNV 0.644 1 20 hm7G_associated_SNPs_13988 0 0 0 0 2 TSPAN17 chr5:176083079 3'AG 176083079 Downstream 55bp 13440 chr5 176083133 176083133 1 + G T LUAD 176083134 + 176083114 176083154 41 CCGGCTCAAACTGGTGAGAGGGGTAGGAACCGGGCTGGGGC CCGGCTCAAACTGGTGAGATGGGTAGGAACCGGGCTGGGGC < 41bp 0.484325394083332 0.796366010509501 NA NA prediction 0.592732021019003 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083134 chr5:176083133 nonsynonymous SNV 0.644 1 20 hm7G_associated_SNPs_13988 0 0 0 0 2 TSPAN17 chr5:176083135 5'GT 176083135 Upstream 3bp 13441 chr3 155637113 155637113 1 + G T UCEC 155637114 + 155637094 155637134 41 CCAGAAGAGTTAGTTTCCAGGCATCCATTTCCAGGTAAAAA CCAGAAGAGTTAGTTTCCATGCATCCATTTCCAGGTAAAAA < 41bp 0.48915721833107 0.796363668119892 NA NA prediction 0.592727336239784 Functional Gain - GMPS ENSG00000163655 CDS Human protein_coding chr3:155637114 chr3:155637113 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13989 0 0 1 0 2 GMPS chr3:155637022 3'AG 155637022 Downstream 92bp 13442 chr3 155637113 155637113 1 + G T UCEC 155637114 + 155637094 155637134 41 CCAGAAGAGTTAGTTTCCAGGCATCCATTTCCAGGTAAAAA CCAGAAGAGTTAGTTTCCATGCATCCATTTCCAGGTAAAAA < 41bp 0.48915721833107 0.796363668119892 NA NA prediction 0.592727336239784 Functional Gain - GMPS ENSG00000163655 CDS Human protein_coding chr3:155637114 chr3:155637113 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_13989 0 0 1 0 2 GMPS chr3:155637127 5'GT 155637127 Upstream 15bp 13443 chr19 40711982 40711982 1 + G T UCEC 40711983 + 40711963 40712003 41 TGAGCCAGGAGAAGCCCCGGGTCCGCAAGCGCAAGGGCAAC TGAGCCAGGAGAAGCCCCGTGTCCGCAAGCGCAAGGGCAAC < 41bp 0.534273624418712 0.830625393055053 NA NA prediction 0.592703537272682 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711983 chr19:40711982 synonymous SNV . 0 20 hm7G_associated_SNPs_13991 0 0 0 0 1 MAP3K10 chr19:40712064 5'GT 40712064 Upstream 83bp 13444 chr14 105201358 105201358 1 + G T LUAD 105201359 + 105201339 105201379 41 GCCGGGTTTCTGTTCCAGGGGGGCAACAACGCCGGCCACAC GCCGGGTTTCTGTTCCAGGTGGGCAACAACGCCGGCCACAC < 41bp 0.539053149893273 0.835403286710728 NA NA prediction 0.59270027363491 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105201359 chr14:105201358 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_13992 0 0 0 0 1 ADSSL1 chr14:105201357 3'AG 105201357 Downstream 2bp 13445 chr1 175116086 175116086 1 + G T STAD 175116087 + 175116067 175116107 41 GGGGTGAACTGGGAGCCTTGGAAAGGACATGAATTCTCCAT GGGGTGAACTGGGAGCCTTTGAAAGGACATGAATTCTCCAT < 41bp 0.501387734099013 0.797707891756882 NA NA prediction 0.592640315315738 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175116087 chr1:175116086 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_13995 0 0 0 0 1 TNN chr1:175116067 3'AG 175116067 Downstream 20bp 13446 chr17 2221196 2221196 1 + G T LIHC 2221197 + 2221177 2221217 41 TCAATGCCGTCAGAAGCTTGGTTCCTGATGCTTTAGAAAGG TCAATGCCGTCAGAAGCTTTGTTCCTGATGCTTTAGAAAGG < 41bp 0.515943849664372 0.812260477399444 NA NA prediction 0.592633255470144 Functional Gain - SRR ENSG00000167720 CDS Human protein_coding chr17:2221197 chr17:2221196 nonsynonymous SNV 0.959 5 20 hm7G_associated_SNPs_13996 0 0 1 0 1 SRR chr17:2221164 3'AG 2221164 Downstream 33bp 13447 chr1 160144390 160144390 1 + G T COAD 160144391 + 160144371 160144411 41 AGCCGTTGTGGCCGTGACAGGTGACGGGGTGAACGACTCCC AGCCGTTGTGGCCGTGACATGTGACGGGGTGAACGACTCCC < 41bp 0.527295033946519 0.823606694584742 NA NA prediction 0.592623321276448 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160144391 chr1:160144390 nonsynonymous SNV 0.080 5 20 hm7G_associated_SNPs_13999 0 0 0 0 1 ATP1A4 chr1:160144369 3'AG 160144369 Downstream 22bp 13448 chr22 21344733 21344733 1 + G T LUAD 21344734 + 21344714 21344754 41 TTCCCCGTGGCTGTGTGCCGGGACAAGATGTTTGTATTCTC TTCCCCGTGGCTGTGTGCCTGGACAAGATGTTTGTATTCTC < 41bp 0.474690891619041 0.79630321054924 NA NA prediction 0.592606421098481 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21344734 chr22:21344733 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_14000 0 0 1 0 2 LZTR1 chr22:21344675 3'AG 21344675 Downstream 59bp 13449 chr22 21344733 21344733 1 + G T LUAD 21344734 + 21344714 21344754 41 TTCCCCGTGGCTGTGTGCCGGGACAAGATGTTTGTATTCTC TTCCCCGTGGCTGTGTGCCTGGACAAGATGTTTGTATTCTC < 41bp 0.474690891619041 0.79630321054924 NA NA prediction 0.592606421098481 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21344734 chr22:21344733 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_14000 0 0 1 0 2 LZTR1 chr22:21344814 5'GT 21344814 Upstream 82bp 13450 chr22 22026647 22026647 1 + G T THYM 22026648 + 22026628 22026668 41 TCCATGGCTTAAGAAGTACGGGACCAACCCCAGCAATGGAG TCCATGGCTTAAGAAGTACTGGACCAACCCCAGCAATGGAG < 41bp 0.54244344738653 0.838734600813686 NA NA prediction 0.592582306854311 Functional Gain - PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22026648 chr22:22026647 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_14002 0 0 1 0 2 PPIL2 chr22:22026619 3'AG 22026619 Downstream 29bp 13451 chr22 22026647 22026647 1 + G T THYM 22026648 + 22026628 22026668 41 TCCATGGCTTAAGAAGTACGGGACCAACCCCAGCAATGGAG TCCATGGCTTAAGAAGTACTGGACCAACCCCAGCAATGGAG < 41bp 0.54244344738653 0.838734600813686 NA NA prediction 0.592582306854311 Functional Gain - PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22026648 chr22:22026647 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_14002 0 0 1 0 2 PPIL2 chr22:22026670 5'GT 22026670 Upstream 24bp 13452 chr18 28906904 28906904 1 + G T ACC 28906905 + 28906885 28906925 41 CGAAGGCAGAAACGTGAATGGATCAAGTTCGCAGCAGCCTG CGAAGGCAGAAACGTGAATTGATCAAGTTCGCAGCAGCCTG < 41bp 0.521295419978101 0.817578205369549 NA NA prediction 0.592565570782896 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28906905 chr18:28906904 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14003 0 0 0 0 2 DSG1 chr18:28906837 3'AG 28906837 Downstream 68bp 13453 chr18 28906904 28906904 1 + G T ACC 28906905 + 28906885 28906925 41 CGAAGGCAGAAACGTGAATGGATCAAGTTCGCAGCAGCCTG CGAAGGCAGAAACGTGAATTGATCAAGTTCGCAGCAGCCTG < 41bp 0.521295419978101 0.817578205369549 NA NA prediction 0.592565570782896 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28906905 chr18:28906904 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14003 0 0 0 0 2 DSG1 chr18:28906968 5'GT 28906968 Upstream 65bp 13454 chr16 2880712 2880712 1 + G T HNSC 2880713 + 2880693 2880733 41 AGAGATGTATGGCCCTGGAGGAGGCAAGTATTTCAGCACCA AGAGATGTATGGCCCTGGATGAGGCAAGTATTTCAGCACCA < 41bp 0.508067300914769 0.804341647254427 NA NA prediction 0.592548692679316 Functional Gain - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880713 chr16:2880712 stopgain 0.000 0 20 hm7G_associated_SNPs_14004 0 0 0 0 2 ZG16B chr16:2880695 3'AG 2880695 Downstream 18bp 13455 chr16 2880712 2880712 1 + G T HNSC 2880713 + 2880693 2880733 41 AGAGATGTATGGCCCTGGAGGAGGCAAGTATTTCAGCACCA AGAGATGTATGGCCCTGGATGAGGCAAGTATTTCAGCACCA < 41bp 0.508067300914769 0.804341647254427 NA NA prediction 0.592548692679316 Functional Gain - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880713 chr16:2880712 stopgain 0.000 0 20 hm7G_associated_SNPs_14004 0 0 0 0 2 ZG16B chr16:2880797 5'GT 2880797 Upstream 86bp 13456 chr7 5340081 5340081 1 + G T SKCM 5340082 + 5340062 5340102 41 GCCCTGCCCGTGGACTGGCGGGGCACCCACCTGCTGGCCTG GCCCTGCCCGTGGACTGGCTGGGCACCCACCTGCTGGCCTG < 41bp 0.542501592636272 0.838773677640349 NA NA prediction 0.592544170008154 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5340082 chr7:5340081 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_14005 0 0 0 0 1 SLC29A4 chr7:5340053 3'AG 5340053 Downstream 29bp 13457 chr1 150413444 150413444 1 + G T CESC 150413445 + 150413425 150413465 41 AACGAATCTTTAAAATCTGGGAAGATAGAAATGTATACCCA AACGAATCTTTAAAATCTGTGAAGATAGAAATGTATACCCA < 41bp 0.506713922540301 0.802974902144824 NA NA prediction 0.592521959209046 Functional Gain - RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150413445 chr1:150413444 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14008 0 0 1 0 2 RPRD2 chr1:150413399 3'AG 150413399 Downstream 46bp 13458 chr1 150413444 150413444 1 + G T CESC 150413445 + 150413425 150413465 41 AACGAATCTTTAAAATCTGGGAAGATAGAAATGTATACCCA AACGAATCTTTAAAATCTGTGAAGATAGAAATGTATACCCA < 41bp 0.506713922540301 0.802974902144824 NA NA prediction 0.592521959209046 Functional Gain - RPRD2 ENSG00000163125 CDS Human protein_coding chr1:150413445 chr1:150413444 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14008 0 0 1 0 2 RPRD2 chr1:150413499 5'GT 150413499 Upstream 56bp 13459 chr20 2411645 2411645 1 + G T LUSC 2411646 + 2411626 2411666 41 GCTGATGGTGGAGGGCAGCGGCCTTCTCCAGGAACAGCTCA GCTGATGGTGGAGGGCAGCTGCCTTCTCCAGGAACAGCTCA < 41bp 0.537265393772029 0.833521736708379 NA NA prediction 0.5925126858727 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2411646 chr20:2411645 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_14009 0 0 0 0 1 TGM6 chr20:2411673 5'GT 2411673 Upstream 29bp 13460 chr10 71677072 71677072 1 + G T HNSC 71677073 + 71677053 71677093 41 GGGCATGCCAGGGATGCCAGGCAAGCATGGAGCCAAGGTAC GGGCATGCCAGGGATGCCATGCAAGCATGGAGCCAAGGTAC < 41bp 0.53466142852995 0.830883154579958 NA NA prediction 0.592443452100015 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71677073 chr10:71677072 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_14011 0 0 0 0 2 COL13A1 chr10:71677045 3'AG 71677045 Downstream 28bp 13461 chr10 71677072 71677072 1 + G T HNSC 71677073 + 71677053 71677093 41 GGGCATGCCAGGGATGCCAGGCAAGCATGGAGCCAAGGTAC GGGCATGCCAGGGATGCCATGCAAGCATGGAGCCAAGGTAC < 41bp 0.53466142852995 0.830883154579958 NA NA prediction 0.592443452100015 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71677073 chr10:71677072 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_14011 0 0 0 0 2 COL13A1 chr10:71677089 5'GT 71677089 Upstream 18bp 13462 chr2 97462819 97462819 1 + G T LIHC 97462820 + 97462800 97462840 41 ACCCCTTCTACGAGGTCCTGGGCCTGGTCACCCTGGAGGAC ACCCCTTCTACGAGGTCCTTGGCCTGGTCACCCTGGAGGAC < 41bp 0.4592688977276 0.796218060274895 NA NA prediction 0.592436120549791 Functional Gain - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97462820 chr2:97462819 synonymous SNV . 0 20 hm7G_associated_SNPs_14012 0 0 1 0 2 CNNM4 chr2:97462749 3'AG 97462749 Downstream 71bp 13463 chr2 97462819 97462819 1 + G T LIHC 97462820 + 97462800 97462840 41 ACCCCTTCTACGAGGTCCTGGGCCTGGTCACCCTGGAGGAC ACCCCTTCTACGAGGTCCTTGGCCTGGTCACCCTGGAGGAC < 41bp 0.4592688977276 0.796218060274895 NA NA prediction 0.592436120549791 Functional Gain - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97462820 chr2:97462819 synonymous SNV . 0 20 hm7G_associated_SNPs_14012 0 0 1 0 2 CNNM4 chr2:97462892 5'GT 97462892 Upstream 74bp 13464 chr7 150747650 150747650 1 + G T rs62001897 150747651 + 150747631 150747671 41 TCGATCAGCTGGGCTTGGGGGTGTCCCCGGGCTACCAGACC TCGATCAGCTGGGCTTGGGTGTGTCCCCGGGCTACCAGACC < 41bp 0.471248733465637 0.796197987406626 NA NA prediction 0.592395974813253 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150747651 chr7:150747650 synonymous SNV . 0 20 hm7G_associated_SNPs_14013 0 0 0 0 2 ASIC3 chr7:150747568 3'AG 150747568 Downstream 83bp 13465 chr7 150747650 150747650 1 + G T rs62001897 150747651 + 150747631 150747671 41 TCGATCAGCTGGGCTTGGGGGTGTCCCCGGGCTACCAGACC TCGATCAGCTGGGCTTGGGTGTGTCCCCGGGCTACCAGACC < 41bp 0.471248733465637 0.796197987406626 NA NA prediction 0.592395974813253 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150747651 chr7:150747650 synonymous SNV . 0 20 hm7G_associated_SNPs_14013 0 0 0 0 2 ASIC3 chr7:150747695 5'GT 150747695 Upstream 46bp 13466 chr11 122795655 122795655 1 + G T GBM 122795656 + 122795636 122795676 41 CGTCTATTCAGAATGCCAAGGAAATGGAAAATGCTGCCATC CGTCTATTCAGAATGCCAATGAAATGGAAAATGCTGCCATC < 41bp 0.478898138209721 0.79618980369186 NA NA prediction 0.592379607383719 Functional Gain - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122795656 chr11:122795655 nonsynonymous SNV 0.933 1 20 hm7G_associated_SNPs_14015 0 0 0 0 2 C11orf63 chr11:122795605 3'AG 122795605 Downstream 51bp 13467 chr11 122795655 122795655 1 + G T GBM 122795656 + 122795636 122795676 41 CGTCTATTCAGAATGCCAAGGAAATGGAAAATGCTGCCATC CGTCTATTCAGAATGCCAATGAAATGGAAAATGCTGCCATC < 41bp 0.478898138209721 0.79618980369186 NA NA prediction 0.592379607383719 Functional Gain - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122795656 chr11:122795655 nonsynonymous SNV 0.933 1 20 hm7G_associated_SNPs_14015 0 0 0 0 2 C11orf63 chr11:122795718 5'GT 122795718 Upstream 64bp 13468 chr2 219544368 219544368 1 + G T UCEC 219544369 + 219544349 219544389 41 AGGTCCTAAAGGACGAACAGGCCCATCGGTTGGCCCCCAAG AGGTCCTAAAGGACGAACATGCCCATCGGTTGGCCCCCAAG < 41bp 0.461415748984296 0.796179133675387 NA NA prediction 0.592358267350774 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219544369 chr2:219544368 nonsynonymous SNV 0.718 4 20 hm7G_associated_SNPs_14016 0 0 0 0 2 STK36 chr2:219544283 3'AG 219544283 Downstream 86bp 13469 chr2 219544368 219544368 1 + G T UCEC 219544369 + 219544349 219544389 41 AGGTCCTAAAGGACGAACAGGCCCATCGGTTGGCCCCCAAG AGGTCCTAAAGGACGAACATGCCCATCGGTTGGCCCCCAAG < 41bp 0.461415748984296 0.796179133675387 NA NA prediction 0.592358267350774 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219544369 chr2:219544368 nonsynonymous SNV 0.718 4 20 hm7G_associated_SNPs_14016 0 0 0 0 2 STK36 chr2:219544452 5'GT 219544452 Upstream 85bp 13470 chr10 102763886 102763886 1 + G T LUAD 102763887 + 102763867 102763907 41 GCAGAGCTTCAGCAGCTGCGGGACAGTCTGGACGAGAATGA GCAGAGCTTCAGCAGCTGCTGGACAGTCTGGACGAGAATGA < 41bp 0.470206729196994 0.796170769692667 NA NA prediction 0.592341539385335 Functional Gain - LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763887 chr10:102763886 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_14017 0 0 1 0 1 LZTS2 chr10:102763923 5'GT 102763923 Upstream 38bp 13471 chr2 69046395 69046395 1 + G T SKCM 69046396 + 69046376 69046416 41 AGTGGCCCGAAGCTCTGTAGGCTGGGATGCCACTGAAGACC AGTGGCCCGAAGCTCTGTATGCTGGGATGCCACTGAAGACC < 41bp 0.470404889230141 0.796165141891042 NA NA prediction 0.592330283782084 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046396 chr2:69046395 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_14018 0 0 0 0 1 ARHGAP25 chr2:69046451 5'GT 69046451 Upstream 57bp 13472 chr2 74307673 74307673 1 + G T ACC 74307674 + 74307654 74307694 41 TCGAGAAGGTCATCTACACGGGGAAGGAGGGAAAGAGCTCC TCGAGAAGGTCATCTACACTGGGAAGGAGGGAAAGAGCTCC < 41bp 0.541500839273623 0.837655804475883 NA NA prediction 0.592309930404519 Functional Gain - TET3 ENSG00000187605 CDS Human protein_coding chr2:74307674 chr2:74307673 synonymous SNV . 0 20 hm7G_associated_SNPs_14019 0 0 1 0 2 TET3 chr2:74307625 3'AG 74307625 Downstream 49bp 13473 chr2 74307673 74307673 1 + G T ACC 74307674 + 74307654 74307694 41 TCGAGAAGGTCATCTACACGGGGAAGGAGGGAAAGAGCTCC TCGAGAAGGTCATCTACACTGGGAAGGAGGGAAAGAGCTCC < 41bp 0.541500839273623 0.837655804475883 NA NA prediction 0.592309930404519 Functional Gain - TET3 ENSG00000187605 CDS Human protein_coding chr2:74307674 chr2:74307673 synonymous SNV . 0 20 hm7G_associated_SNPs_14019 0 0 1 0 2 TET3 chr2:74307718 5'GT 74307718 Upstream 46bp 13474 chr19 54403553 54403553 1 + G T UCEC 54403554 + 54403534 54403574 41 GTACCACATTCAACAGCTGGGCAAGTTTAAGGAGCCCCATG GTACCACATTCAACAGCTGTGCAAGTTTAAGGAGCCCCATG < 41bp 0.549739751104327 0.84585814025431 NA NA prediction 0.592236778299968 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403554 chr19:54403553 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_14022 0 0 0 0 1 PRKCG chr19:54403487 3'AG 54403487 Downstream 67bp 13475 chr15 52098649 52098649 1 + G T UCEC 52098650 + 52098630 52098670 41 TTCAAGGATCCTCAAGTTTGGATACCAGTTTACCAAGCAAG TTCAAGGATCCTCAAGTTTTGATACCAGTTTACCAAGCAAG < 41bp 0.521040722256156 0.817148628124269 NA NA prediction 0.592215811736227 Functional Gain - TMOD2 ENSG00000128872 CDS Human protein_coding chr15:52098650 chr15:52098649 stopgain 0.998 1 20 hm7G_associated_SNPs_14023 0 0 1 0 2 TMOD2 chr15:52098574 3'AG 52098574 Downstream 76bp 13476 chr15 52098649 52098649 1 + G T UCEC 52098650 + 52098630 52098670 41 TTCAAGGATCCTCAAGTTTGGATACCAGTTTACCAAGCAAG TTCAAGGATCCTCAAGTTTTGATACCAGTTTACCAAGCAAG < 41bp 0.521040722256156 0.817148628124269 NA NA prediction 0.592215811736227 Functional Gain - TMOD2 ENSG00000128872 CDS Human protein_coding chr15:52098650 chr15:52098649 stopgain 0.998 1 20 hm7G_associated_SNPs_14023 0 0 1 0 2 TMOD2 chr15:52098718 5'GT 52098718 Upstream 70bp 13477 chr21 42813706 42813706 1 + G T STAD 42813707 + 42813687 42813727 41 AAGGTTGTGGACGTGGTGCGGAACCTCGTGTTCCACCTGAA AAGGTTGTGGACGTGGTGCTGAACCTCGTGTTCCACCTGAA < 41bp 0.539031895628865 0.835137506785723 NA NA prediction 0.592211222313715 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42813707 chr21:42813706 nonsynonymous SNV 0.092 3 20 hm7G_associated_SNPs_14025 0 0 0 0 1 MX1 chr21:42813643 3'AG 42813643 Downstream 64bp 13478 chr6 155532416 155532416 1 + G T LGG 155532417 + 155532397 155532437 41 CTGGATCAGGTTTCCCACAGGGAGAAAATGGAGCAGACATT CTGGATCAGGTTTCCCACATGGAGAAAATGGAGCAGACATT < 41bp 0.487092589887045 0.796092257995689 NA NA prediction 0.592184515991378 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155532417 chr6:155532416 nonsynonymous SNV 0.044 0 20 hm7G_associated_SNPs_14026 0 0 0 0 1 TIAM2 chr6:155532338 3'AG 155532338 Downstream 79bp 13479 chr19 30164800 30164800 1 + G T STAD 30164801 + 30164781 30164821 41 GCCAGCGCATCGCGGCAGTGGAGAGCTGCTTCGGGGCCTCG GCCAGCGCATCGCGGCAGTTGAGAGCTGCTTCGGGGCCTCG < 41bp 0.480150719839954 0.796091411246514 NA NA prediction 0.592182822493029 Functional Gain - PLEKHF1 ENSG00000166289 CDS Human protein_coding chr19:30164801 chr19:30164800 synonymous SNV . 0 20 hm7G_associated_SNPs_14027 0 0 0 0 1 PLEKHF1 chr19:30164731 3'AG 30164731 Downstream 70bp 13480 chr12 52378984 52378984 1 + G T UCEC 52378985 + 52378965 52379005 41 TTCTCTGCCAGGGAAGCCTGGAATTGCTCATCGAGACTTAA TTCTCTGCCAGGGAAGCCTTGAATTGCTCATCGAGACTTAA < 41bp 0.484951838594008 0.796081326946278 NA NA prediction 0.592162653892556 Functional Gain - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52378985 chr12:52378984 stopgain 1.000 1 20 hm7G_associated_SNPs_14029 0 0 1 0 1 ACVR1B chr12:52378976 3'AG 52378976 Downstream 9bp 13481 chr15 89719209 89719209 1 + G T UCEC 89719210 + 89719190 89719230 41 GCTGCGTCAGCGTGTGCCAGGGGTACAGTGCACTGAGGTGA GCTGCGTCAGCGTGTGCCATGGGTACAGTGCACTGAGGTGA < 41bp 0.467779380605725 0.796074327624558 NA NA prediction 0.592148655249115 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89719210 chr15:89719209 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14030 0 0 1 0 1 ABHD2 chr15:89719226 5'GT 89719226 Upstream 18bp 13482 chr2 44503035 44503035 1 + G T LUAD 44503036 + 44503016 44503056 41 CCTAGACTGGTGGCAGGAGGGGCCCATGTACCAGATCTACC CCTAGACTGGTGGCAGGAGTGGCCCATGTACCAGATCTACC < 41bp 0.515412657488239 0.811477324323844 NA NA prediction 0.592129333671211 Functional Gain - SLC3A1 ENSG00000138079 CDS Human protein_coding chr2:44503036 chr2:44503035 nonsynonymous SNV 0.961 5 20 hm7G_associated_SNPs_14031 0 0 0 0 1 SLC3A1 chr2:44503104 5'GT 44503104 Upstream 70bp 13483 chr1 231406669 231406669 1 + G T UCEC 231406670 + 231406650 231406690 41 CTCATGTGCTCAGCTTATAGGAACCAGCTGCTCAACATTTT CTCATGTGCTCAGCTTATATGAACCAGCTGCTCAACATTTT < 41bp 0.515948278828293 0.81201069884075 NA NA prediction 0.592124840024914 Functional Gain - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231406670 chr1:231406669 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14032 0 0 1 0 1 GNPAT chr1:231406746 5'GT 231406746 Upstream 78bp 13484 chrX 22244602 22244602 1 + G T STAD 22244603 + 22244583 22244623 41 AGAAAATATTGCTGATAATGGAGGCCTGCGGGAAGCTTTTA AGAAAATATTGCTGATAATTGAGGCCTGCGGGAAGCTTTTA < 41bp 0.524469399941468 0.820530073455591 NA NA prediction 0.592121347028245 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22244603 chrX:22244602 stopgain 1.000 1 20 hm7G_associated_SNPs_14033 0 0 0 0 1 PHEX chrX:22244560 3'AG 22244560 Downstream 43bp 13485 chr15 28632821 28632821 1 + G T CESC 28632822 + 28632802 28632842 41 CTAGCATCCCACAGGACCTGGAGAGCAGGGAGGCCATGGTG CTAGCATCCCACAGGACCTTGAGAGCAGGGAGGCCATGGTG < 41bp 0.478621132164223 0.796036631301937 NA NA prediction 0.592073262603874 Functional Gain - GOLGA8F;GOLGA8G ENSG00000153684 CDS Human protein_coding chr15:28632822 chr15:28632821 synonymous SNV . 0 20 hm7G_associated_SNPs_14035 0 0 0 0 1 GOLGA8F;GOLGA8G chr15:28632748 3'AG 28632748 Downstream 74bp 13486 chr13 99061775 99061775 1 + G T UCEC 99061776 + 99061756 99061796 41 GATGAGGATGAGGGCCGGAGGAAGGTACAGGGCCGAGGGCT GATGAGGATGAGGGCCGGATGAAGGTACAGGGCCGAGGGCT < 41bp 0.483485066040084 0.796011209042348 NA NA prediction 0.592022418084696 Functional Gain - FARP1 ENSG00000152767 CDS Human protein_coding chr13:99061776 chr13:99061775 nonsynonymous SNV 0.607 4 20 hm7G_associated_SNPs_14036 0 0 1 0 1 FARP1 chr13:99061779 5'GT 99061779 Upstream 5bp 13487 chr4 99342495 99342495 1 + G T UCEC 99342496 + 99342476 99342516 41 AGATCATGCTGGTGTGATGGGGGAGTCAAACAGACTGCTGT AGATCATGCTGGTGTGATGTGGGAGTCAAACAGACTGCTGT < 41bp 0.519179849076479 0.81517404310351 NA NA prediction 0.591988388054062 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99342496 chr4:99342495 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14038 0 0 1 0 3 RAP1GDS1 chr4:99342406 3'AG 99342406 Downstream 90bp 13488 chr4 99342495 99342495 1 + G T UCEC 99342496 + 99342476 99342516 41 AGATCATGCTGGTGTGATGGGGGAGTCAAACAGACTGCTGT AGATCATGCTGGTGTGATGTGGGAGTCAAACAGACTGCTGT < 41bp 0.519179849076479 0.81517404310351 NA NA prediction 0.591988388054062 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99342496 chr4:99342495 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14038 0 0 1 0 3 RAP1GDS1 chr4:99342409 3'AG 99342409 Downstream 87bp 13489 chr4 99342495 99342495 1 + G T UCEC 99342496 + 99342476 99342516 41 AGATCATGCTGGTGTGATGGGGGAGTCAAACAGACTGCTGT AGATCATGCTGGTGTGATGTGGGAGTCAAACAGACTGCTGT < 41bp 0.519179849076479 0.81517404310351 NA NA prediction 0.591988388054062 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99342496 chr4:99342495 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14038 0 0 1 0 3 RAP1GDS1 chr4:99342545 5'GT 99342545 Upstream 51bp 13490 chr19 4769310 4769310 1 + G T UCEC 4769311 + 4769291 4769331 41 CCCAGAAAGGGACAGAGACGGCGAAGTTTGACGGTCTGGAA CCCAGAAAGGGACAGAGACTGCGAAGTTTGACGGTCTGGAA < 41bp 0.498102855632418 0.795990899952891 NA NA prediction 0.591981799905783 Functional Gain - MIR7-3HG ENSG00000176840 ncRNA_exonic Human lincRNA chr19:4769311 chr19:4769310 . . 0 20 hm7G_associated_SNPs_14039 0 0 0 0 1 MIR7-3HG chr19:4769363 5'GT 4769363 Upstream 54bp 13491 chr3 179426658 179426658 1 + G T UCEC 179426659 + 179426639 179426679 41 GTGGTTCTTTGACAGCTCTGGGGGCAACGGGCATGCGCTGG GTGGTTCTTTGACAGCTCTTGGGGCAACGGGCATGCGCTGG < 41bp 0.537066105372353 0.833026182921354 NA NA prediction 0.591920155098002 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179426659 chr3:179426658 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_14040 0 0 1 0 2 USP13 chr3:179426561 3'AG 179426561 Downstream 98bp 13492 chr3 179426658 179426658 1 + G T UCEC 179426659 + 179426639 179426679 41 GTGGTTCTTTGACAGCTCTGGGGGCAACGGGCATGCGCTGG GTGGTTCTTTGACAGCTCTTGGGGCAACGGGCATGCGCTGG < 41bp 0.537066105372353 0.833026182921354 NA NA prediction 0.591920155098002 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179426659 chr3:179426658 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_14040 0 0 1 0 2 USP13 chr3:179426745 5'GT 179426745 Upstream 88bp 13493 chr1 173840201 173840201 1 + G T LUAD 173840202 + 173840182 173840222 41 CATGGTGATTGATACCACAGGCCATGGTTCTGTAGGACAGG CATGGTGATTGATACCACATGCCATGGTTCTGTAGGACAGG < 41bp 0.520799243465832 0.816747495252355 NA NA prediction 0.591896503573047 Functional Gain - ZBTB37 ENSG00000185278 CDS Human protein_coding chr1:173840202 chr1:173840201 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_14042 0 0 0 0 1 ZBTB37 chr1:173840286 5'GT 173840286 Upstream 86bp 13494 chr8 134232832 134232832 1 + G T LUAD 134232833 + 134232813 134232853 41 TGTGTTTGCAGAGGTGGTCGGTGTGGGCTGCGTCCTGGATG TGTGTTTGCAGAGGTGGTCTGTGTGGGCTGCGTCCTGGATG < 41bp 0.500372706894833 0.796281965807543 NA NA prediction 0.59181851782542 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134232833 chr8:134232832 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14044 0 0 0 0 1 WISP1 chr8:134232824 3'AG 134232824 Downstream 9bp 13495 chr1 104120392 104120392 1 + G T LUAD 104120393 + 104120373 104120413 41 GGCCAGCCTTTTACAAACTGGTATGATAATGGGAGCAACCA GGCCAGCCTTTTACAAACTTGTATGATAATGGGAGCAACCA < 41bp 0.498101888995631 0.795903240229808 NA NA prediction 0.591806480459616 Functional Gain - AMY2B ENSG00000240038 CDS Human protein_coding chr1:104120393 chr1:104120392 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14045 0 0 0 0 2 AMY2B chr1:104120342 3'AG 104120342 Downstream 51bp 13496 chr1 104120392 104120392 1 + G T LUAD 104120393 + 104120373 104120413 41 GGCCAGCCTTTTACAAACTGGTATGATAATGGGAGCAACCA GGCCAGCCTTTTACAAACTTGTATGATAATGGGAGCAACCA < 41bp 0.498101888995631 0.795903240229808 NA NA prediction 0.591806480459616 Functional Gain - AMY2B ENSG00000240038 CDS Human protein_coding chr1:104120393 chr1:104120392 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14045 0 0 0 0 2 AMY2B chr1:104120467 5'GT 104120467 Upstream 76bp 13497 chr5 1216688 1216688 1 + G T PRAD 1216689 + 1216669 1216709 41 GCAGCAACAACTGCGAGAAGGACTCGGTGATTGTGTCCATC GCAGCAACAACTGCGAGAATGACTCGGTGATTGTGTCCATC < 41bp 0.53548025783066 0.831372455936764 NA NA prediction 0.59178439621221 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1216689 chr5:1216688 stopgain 0.804 1 20 hm7G_associated_SNPs_14047 0 0 0 0 1 SLC6A19 chr5:1216673 3'AG 1216673 Downstream 16bp 13498 chr15 89415260 89415260 1 + G T LUAD 89415261 + 89415241 89415281 41 CCAAGACTACCAGTGGATCGGCCTGAACGACAGGACCATCG CCAAGACTACCAGTGGATCTGCCTGAACGACAGGACCATCG < 41bp 0.489119280305554 0.795878932400828 NA NA prediction 0.591757864801655 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89415261 chr15:89415260 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14049 0 0 0 0 2 ACAN chr15:89415234 3'AG 89415234 Downstream 27bp 13499 chr15 89415260 89415260 1 + G T LUAD 89415261 + 89415241 89415281 41 CCAAGACTACCAGTGGATCGGCCTGAACGACAGGACCATCG CCAAGACTACCAGTGGATCTGCCTGAACGACAGGACCATCG < 41bp 0.489119280305554 0.795878932400828 NA NA prediction 0.591757864801655 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89415261 chr15:89415260 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14049 0 0 0 0 2 ACAN chr15:89415316 5'GT 89415316 Upstream 57bp 13500 chr3 159706912 159706912 1 + G T LUSC 159706913 + 159706893 159706933 41 CCACAGGTCTGCATCCAGCGGCTCGCCCTGTGTCCCTGCAG CCACAGGTCTGCATCCAGCTGCTCGCCCTGTGTCCCTGCAG < 41bp 0.497586718198324 0.795876035526275 NA NA prediction 0.591752071052549 Functional Gain - IL12A ENSG00000168811 CDS Human protein_coding chr3:159706913 chr3:159706912 synonymous SNV . 0 20 hm7G_associated_SNPs_14051 0 0 1 0 1 IL12A chr3:159706961 5'GT 159706961 Upstream 50bp 13501 chrX 129543289 129543289 1 + G T UCEC 129543290 + 129543270 129543310 41 GAAAACTGGGAAATCCAAAGGATTCTGTTTCCTCTGCTATG GAAAACTGGGAAATCCAAATGATTCTGTTTCCTCTGCTATG < 41bp 0.51709605812848 0.812969199736258 NA NA prediction 0.591746283215556 Functional Gain - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129543290 chrX:129543289 stopgain 1.000 1 20 hm7G_associated_SNPs_14052 0 0 1 0 2 RBMX2 chrX:129543231 3'AG 129543231 Downstream 59bp 13502 chrX 129543289 129543289 1 + G T UCEC 129543290 + 129543270 129543310 41 GAAAACTGGGAAATCCAAAGGATTCTGTTTCCTCTGCTATG GAAAACTGGGAAATCCAAATGATTCTGTTTCCTCTGCTATG < 41bp 0.51709605812848 0.812969199736258 NA NA prediction 0.591746283215556 Functional Gain - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129543290 chrX:129543289 stopgain 1.000 1 20 hm7G_associated_SNPs_14052 0 0 1 0 2 RBMX2 chrX:129543360 5'GT 129543360 Upstream 72bp 13503 chr6 43191089 43191089 1 + G T LUAD 43191090 + 43191070 43191110 41 ACGGGCATGGAGCTGCTCCGGCGGATCCAGGAGAGGCTGCT ACGGGCATGGAGCTGCTCCTGCGGATCCAGGAGAGGCTGCT < 41bp 0.470684616337659 0.795852881952097 NA NA prediction 0.591705763904194 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43191090 chr6:43191089 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_14054 0 0 0 0 2 CUL9 chr6:43191002 3'AG 43191002 Downstream 88bp 13504 chr6 43191089 43191089 1 + G T LUAD 43191090 + 43191070 43191110 41 ACGGGCATGGAGCTGCTCCGGCGGATCCAGGAGAGGCTGCT ACGGGCATGGAGCTGCTCCTGCGGATCCAGGAGAGGCTGCT < 41bp 0.470684616337659 0.795852881952097 NA NA prediction 0.591705763904194 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43191090 chr6:43191089 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_14054 0 0 0 0 2 CUL9 chr6:43191135 5'GT 43191135 Upstream 47bp 13505 chr20 37524228 37524228 1 + G T PAAD 37524229 + 37524209 37524249 41 GCTGCATCGACAACTTTGAGGAAATTGTGAAGCTGCTCCTC GCTGCATCGACAACTTTGATGAAATTGTGAAGCTGCTCCTC < 41bp 0.46782125413301 0.795841659065957 NA NA prediction 0.591683318131914 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37524229 chr20:37524228 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_14057 0 0 0 0 1 PPP1R16B chr20:37524208 3'AG 37524208 Downstream 21bp 13506 chr12 10370711 10370711 1 + G T UCEC 10370712 + 10370692 10370732 41 GTGCCTGATCTGGACAAGAGGAAGTACCTAGTGCCCTCTGA GTGCCTGATCTGGACAAGATGAAGTACCTAGTGCCCTCTGA < 41bp 0.527263402246178 0.823099030563276 NA NA prediction 0.591671256634195 Functional Gain - GABARAPL1 ENSG00000139112 CDS Human protein_coding chr12:10370712 chr12:10370711 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_14058 0 0 1 0 2 GABARAPL1 chr12:10370662 3'AG 10370662 Downstream 50bp 13507 chr12 10370711 10370711 1 + G T UCEC 10370712 + 10370692 10370732 41 GTGCCTGATCTGGACAAGAGGAAGTACCTAGTGCCCTCTGA GTGCCTGATCTGGACAAGATGAAGTACCTAGTGCCCTCTGA < 41bp 0.527263402246178 0.823099030563276 NA NA prediction 0.591671256634195 Functional Gain - GABARAPL1 ENSG00000139112 CDS Human protein_coding chr12:10370712 chr12:10370711 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_14058 0 0 1 0 2 GABARAPL1 chr12:10370740 5'GT 10370740 Upstream 30bp 13508 chr11 89018021 89018021 1 + G T LUAD 89018022 + 89018002 89018042 41 GCACCCATTGGACATAACCGGGAATCCTACATGGTTCCTTT GCACCCATTGGACATAACCTGGAATCCTACATGGTTCCTTT < 41bp 0.486341784892447 0.795829570315695 NA NA prediction 0.591659140631391 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:89018022 chr11:89018021 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_14059 0 0 0 0 1 TYR chr11:89017941 3'AG 89017941 Downstream 81bp 13509 chrX 10096734 10096734 1 + G T UCEC 10096735 + 10096715 10096755 41 GCAAGGAGGAGCAGGCCGAGGCCATATCCGAGCGGTAAGGG GCAAGGAGGAGCAGGCCGATGCCATATCCGAGCGGTAAGGG < 41bp 0.45961263220209 0.795827030889455 NA NA prediction 0.59165406177891 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10096735 chrX:10096734 nonsynonymous SNV 0.053 0 20 hm7G_associated_SNPs_14060 0 0 1 0 1 WWC3 chrX:10096748 5'GT 10096748 Upstream 15bp 13510 chr16 68877550 68877550 1 + G T OV 68877551 + 68877531 68877571 41 GACAGGCCGTGGGCAGCGGGGCTCAGGAGACATGCGGTCTG GACAGGCCGTGGGCAGCGGTGCTCAGGAGACATGCGGTCTG < 41bp 0.485686999618977 0.795816746948307 NA NA prediction 0.591633493896614 Functional Gain - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68877551 chr16:68877550 synonymous SNV . 0 20 hm7G_associated_SNPs_14062 0 0 1 0 1 TANGO6 chr16:68877614 5'GT 68877614 Upstream 65bp 13511 chr11 22396358 22396358 1 + G T LUAD 22396359 + 22396339 22396379 41 AATTATTGTGCCTATTGGGGGACAAATTGCAGATTTTCTAA AATTATTGTGCCTATTGGGTGACAAATTGCAGATTTTCTAA < 41bp 0.498663629519237 0.795810727238317 NA NA prediction 0.591621454476633 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22396359 chr11:22396358 stopgain 0.964 1 20 hm7G_associated_SNPs_14064 0 0 0 0 2 SLC17A6 chr11:22396301 3'AG 22396301 Downstream 58bp 13512 chr11 22396358 22396358 1 + G T LUAD 22396359 + 22396339 22396379 41 AATTATTGTGCCTATTGGGGGACAAATTGCAGATTTTCTAA AATTATTGTGCCTATTGGGTGACAAATTGCAGATTTTCTAA < 41bp 0.498663629519237 0.795810727238317 NA NA prediction 0.591621454476633 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22396359 chr11:22396358 stopgain 0.964 1 20 hm7G_associated_SNPs_14064 0 0 0 0 2 SLC17A6 chr11:22396433 5'GT 22396433 Upstream 76bp 13513 chr1 53543455 53543455 1 + G T LIHC 53543456 + 53543436 53543476 41 ACCTGACTGACGAGGGCCTGGACAACGAGACCTTCTGGTGA ACCTGACTGACGAGGGCCTTGACAACGAGACCTTCTGGTGA < 41bp 0.540422002241185 0.836230428188756 NA NA prediction 0.591616851895143 Functional Gain - PODN ENSG00000174348 CDS Human protein_coding chr1:53543456 chr1:53543455 synonymous SNV . 0 20 hm7G_associated_SNPs_14065 0 0 0 0 2 PODN chr1:53543357 3'AG 53543357 Downstream 99bp 13514 chr1 53543455 53543455 1 + G T LIHC 53543456 + 53543436 53543476 41 ACCTGACTGACGAGGGCCTGGACAACGAGACCTTCTGGTGA ACCTGACTGACGAGGGCCTTGACAACGAGACCTTCTGGTGA < 41bp 0.540422002241185 0.836230428188756 NA NA prediction 0.591616851895143 Functional Gain - PODN ENSG00000174348 CDS Human protein_coding chr1:53543456 chr1:53543455 synonymous SNV . 0 20 hm7G_associated_SNPs_14065 0 0 0 0 2 PODN chr1:53543472 5'GT 53543472 Upstream 18bp 13515 chr17 41590792 41590792 1 + G T LUAD 41590793 + 41590773 41590813 41 ATGGTATCTACTATGTGGTGGACCCAGGATTCGTGAAACAG ATGGTATCTACTATGTGGTTGACCCAGGATTCGTGAAACAG < 41bp 0.478403114488079 0.795796328877598 NA NA prediction 0.591592657755196 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41590793 chr17:41590792 synonymous SNV . 0 20 hm7G_associated_SNPs_14066 0 0 1 0 2 DHX8 chr17:41590730 3'AG 41590730 Downstream 63bp 13516 chr17 41590792 41590792 1 + G T LUAD 41590793 + 41590773 41590813 41 ATGGTATCTACTATGTGGTGGACCCAGGATTCGTGAAACAG ATGGTATCTACTATGTGGTTGACCCAGGATTCGTGAAACAG < 41bp 0.478403114488079 0.795796328877598 NA NA prediction 0.591592657755196 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41590793 chr17:41590792 synonymous SNV . 0 20 hm7G_associated_SNPs_14066 0 0 1 0 2 DHX8 chr17:41590870 5'GT 41590870 Upstream 79bp 13517 chr3 152165513 152165513 1 + G T UCEC 152165514 + 152165494 152165534 41 GTATTTTCCAATACCAACAGGCTCTAGCCAACATGCAGTTA GTATTTTCCAATACCAACATGCTCTAGCCAACATGCAGTTA < 41bp 0.491814490377091 0.795774986310149 NA NA prediction 0.591549972620298 Functional Gain - MBNL1 ENSG00000152601;ENSG00000152601 exonic;splicing Human protein_coding chr3:152165514 chr3:152165513 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14068 0 0 1 0 1 MBNL1 chr3:152165562 5'GT 152165562 Upstream 50bp 13518 chr11 61111623 61111623 1 + G T GBM 61111624 + 61111604 61111644 41 CTAGGCTCAGCCTCGAAGCGGATGGCGCTGGTGCTGGAACG CTAGGCTCAGCCTCGAAGCTGATGGCGCTGGTGCTGGAACG < 41bp 0.476959156726802 0.795760291079869 NA NA prediction 0.591520582159738 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61111624 chr11:61111623 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_14069 0 0 1 0 1 TKFC chr11:61111608 3'AG 61111608 Downstream 16bp 13519 chr11 34149145 34149145 1 + G T LUAD 34149146 + 34149126 34149166 41 CATGGCATCCACCATCAATGGGTAAGGTACTGTGGGCAGGA CATGGCATCCACCATCAATTGGTAAGGTACTGTGGGCAGGA < 41bp 0.534870059411738 0.830613184956963 NA NA prediction 0.591486251090449 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34149146 chr11:34149145 nonsynonymous SNV 0.806 4 20 hm7G_associated_SNPs_14071 0 0 0 0 1 NAT10 chr11:34149146 5'GT 34149146 Upstream 2bp 13520 chrX 129154964 129154964 1 + G T HNSC 129154965 + 129154945 129154985 41 TCTACCTCTCCACAGTGCCGGAAGCTGCCCAGTGACCCCCA TCTACCTCTCCACAGTGCCTGAAGCTGCCCAGTGACCCCCA < 41bp 0.536913398082847 0.832655824979301 NA NA prediction 0.591484853792908 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129154965 chrX:129154964 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_14072 0 0 1 0 1 BCORL1 chrX:129154960 3'AG 129154960 Downstream 5bp 13521 chr9 133553985 133553985 1 + G T UCEC 133553986 + 133553966 133554006 41 CACCTTCCTGGGGATCCCAGGTGTGCCCGGGCTAGAGGAGG CACCTTCCTGGGGATCCCATGTGTGCCCGGGCTAGAGGAGG < 41bp 0.520819550719551 0.81654965632096 NA NA prediction 0.591460211202818 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553986 chr9:133553985 nonsynonymous SNV 0.983 3 20 hm7G_associated_SNPs_14073 0 0 0 0 2 PRDM12 chr9:133553916 3'AG 133553916 Downstream 70bp 13522 chr9 133553985 133553985 1 + G T UCEC 133553986 + 133553966 133554006 41 CACCTTCCTGGGGATCCCAGGTGTGCCCGGGCTAGAGGAGG CACCTTCCTGGGGATCCCATGTGTGCCCGGGCTAGAGGAGG < 41bp 0.520819550719551 0.81654965632096 NA NA prediction 0.591460211202818 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553986 chr9:133553985 nonsynonymous SNV 0.983 3 20 hm7G_associated_SNPs_14073 0 0 0 0 2 PRDM12 chr9:133554027 5'GT 133554027 Upstream 43bp 13523 chr5 40976868 40976868 1 + G T LUAD 40976869 + 40976849 40976889 41 TAGAAAATCCGTTAACACAGGCAGTGCCTAAATGTCAGCGC TAGAAAATCCGTTAACACATGCAGTGCCTAAATGTCAGCGC < 41bp 0.509014765584999 0.80472761825446 NA NA prediction 0.591425705338921 Functional Gain - C7 ENSG00000112936 CDS Human protein_coding chr5:40976869 chr5:40976868 nonsynonymous SNV 0.093 0 20 hm7G_associated_SNPs_14075 0 0 0 2 2 C7 chr5:40976852 3'AG 40976852 Downstream 17bp 13524 chr5 40976868 40976868 1 + G T LUAD 40976869 + 40976849 40976889 41 TAGAAAATCCGTTAACACAGGCAGTGCCTAAATGTCAGCGC TAGAAAATCCGTTAACACATGCAGTGCCTAAATGTCAGCGC < 41bp 0.509014765584999 0.80472761825446 NA NA prediction 0.591425705338921 Functional Gain - C7 ENSG00000112936 CDS Human protein_coding chr5:40976869 chr5:40976868 nonsynonymous SNV 0.093 0 20 hm7G_associated_SNPs_14075 0 0 0 2 2 C7 chr5:40976942 5'GT 40976942 Upstream 75bp 13525 chr17 30801803 30801803 1 + G T LAML 30801804 + 30801784 30801824 41 CAGAAGATGTCCAGGCTTTGGTGAGCGGGAAGCTTGCACTT CAGAAGATGTCCAGGCTTTTGTGAGCGGGAAGCTTGCACTT < 41bp 0.524598872678779 0.820291503004517 NA NA prediction 0.591385260651476 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30801804 chr17:30801803 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14077 0 0 1 0 2 PSMD11 chr17:30801782 3'AG 30801782 Downstream 22bp 13526 chr17 30801803 30801803 1 + G T LAML 30801804 + 30801784 30801824 41 CAGAAGATGTCCAGGCTTTGGTGAGCGGGAAGCTTGCACTT CAGAAGATGTCCAGGCTTTTGTGAGCGGGAAGCTTGCACTT < 41bp 0.524598872678779 0.820291503004517 NA NA prediction 0.591385260651476 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30801804 chr17:30801803 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14077 0 0 1 0 2 PSMD11 chr17:30801842 5'GT 30801842 Upstream 40bp 13527 chr12 123345531 123345531 1 + G T COAD 123345532 + 123345512 123345552 41 CTCGCACAGTCAATGAGAGGGCTGCCAATGTGGTGGCCTCC CTCGCACAGTCAATGAGAGTGCTGCCAATGTGGTGGCCTCC < 41bp 0.547532762800952 0.843209019103857 NA NA prediction 0.591352512605809 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123345532 chr12:123345531 nonsynonymous SNV 0.228 1 20 hm7G_associated_SNPs_14078 0 0 0 0 2 HIP1R chr12:123345463 3'AG 123345463 Downstream 69bp 13528 chr12 123345531 123345531 1 + G T COAD 123345532 + 123345512 123345552 41 CTCGCACAGTCAATGAGAGGGCTGCCAATGTGGTGGCCTCC CTCGCACAGTCAATGAGAGTGCTGCCAATGTGGTGGCCTCC < 41bp 0.547532762800952 0.843209019103857 NA NA prediction 0.591352512605809 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123345532 chr12:123345531 nonsynonymous SNV 0.228 1 20 hm7G_associated_SNPs_14078 0 0 0 0 2 HIP1R chr12:123345586 5'GT 123345586 Upstream 56bp 13529 chr11 124740572 124740572 1 + G T LUSC 124740573 + 124740553 124740593 41 AGGGAACGTACACCTGTGTGGCGGAGAACAGTGTGGGCCGC AGGGAACGTACACCTGTGTTGCGGAGAACAGTGTGGGCCGC < 41bp 0.548777867528372 0.844412621363916 NA NA prediction 0.591269507671088 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124740573 chr11:124740572 synonymous SNV . 0 20 hm7G_associated_SNPs_14080 0 0 0 0 2 ROBO3 chr11:124740497 3'AG 124740497 Downstream 76bp 13530 chr11 124740572 124740572 1 + G T LUSC 124740573 + 124740553 124740593 41 AGGGAACGTACACCTGTGTGGCGGAGAACAGTGTGGGCCGC AGGGAACGTACACCTGTGTTGCGGAGAACAGTGTGGGCCGC < 41bp 0.548777867528372 0.844412621363916 NA NA prediction 0.591269507671088 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124740573 chr11:124740572 synonymous SNV . 0 20 hm7G_associated_SNPs_14080 0 0 0 0 2 ROBO3 chr11:124740624 5'GT 124740624 Upstream 53bp 13531 chr1 220986690 220986690 1 + G T LUAD 220986691 + 220986671 220986711 41 GGAAAATCACCACTCTTTGGGCAGTATTTTGTGCTGGAAAA GGAAAATCACCACTCTTTGTGCAGTATTTTGTGCTGGAAAA < 41bp 0.50229664118413 0.797910570736647 NA NA prediction 0.591227859105035 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220986691 chr1:220986690 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_14081 0 0 1 0 1 MARC1 chr1:220986634 3'AG 220986634 Downstream 57bp 13532 chr8 24251628 24251628 1 + G T UCEC 24251629 + 24251609 24251649 41 AACATTGTACTCACCCAGAGGAGAGGAAATTACCACGAAAC AACATTGTACTCACCCAGATGAGAGGAAATTACCACGAAAC < 41bp 0.515997604875243 0.811601092923694 NA NA prediction 0.591206976096903 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24251629 chr8:24251628 stopgain 0.954 0 20 hm7G_associated_SNPs_14082 0 0 0 0 2 ADAMDEC1 chr8:24251582 3'AG 24251582 Downstream 47bp 13533 chr8 24251628 24251628 1 + G T UCEC 24251629 + 24251609 24251649 41 AACATTGTACTCACCCAGAGGAGAGGAAATTACCACGAAAC AACATTGTACTCACCCAGATGAGAGGAAATTACCACGAAAC < 41bp 0.515997604875243 0.811601092923694 NA NA prediction 0.591206976096903 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24251629 chr8:24251628 stopgain 0.954 0 20 hm7G_associated_SNPs_14082 0 0 0 0 2 ADAMDEC1 chr8:24251660 5'GT 24251660 Upstream 33bp 13534 chr17 9631299 9631299 1 + G T OV 9631300 + 9631280 9631320 41 AGCCCAGGCGTTTGGTACGGGGCGTGAAAGGCAGAAGCATT AGCCCAGGCGTTTGGTACGTGGCGTGAAAGGCAGAAGCATT < 41bp 0.488291481178376 0.795602550108705 NA NA prediction 0.591205100217411 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9631300 chr17:9631299 synonymous SNV . 0 20 hm7G_associated_SNPs_14084 0 0 0 0 1 USP43 chr17:9631271 3'AG 9631271 Downstream 29bp 13535 chr17 35742958 35742958 1 + G T COAD 35742959 + 35742939 35742979 41 TTTTATAGCTTTTTTACCAGGGATCTCACAATGTAAAGTCC TTTTATAGCTTTTTTACCATGGATCTCACAATGTAAAGTCC < 41bp 0.504254898559511 0.799849358381883 NA NA prediction 0.591188919644744 Functional Gain - C17orf78 ENSG00000167230 CDS Human other chr17:35742959 chr17:35742958 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_14085 0 0 0 0 1 C17orf78 chr17:35742947 3'AG 35742947 Downstream 12bp 13536 chr15 59752333 59752333 1 + G T SARC 59752334 + 59752314 59752354 41 AAGGGGGAGGTGACCGCTTGGCCAGGCTTTTCTTGGAGGAG AAGGGGGAGGTGACCGCTTTGCCAGGCTTTTCTTGGAGGAG < 41bp 0.478167709890455 0.795592161221366 NA NA prediction 0.591184322442732 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59752334 chr15:59752333 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14086 0 0 1 0 1 FAM81A chr15:59752405 5'GT 59752405 Upstream 73bp 13537 chr16 56309859 56309859 1 + G T LUAD 56309860 + 56309840 56309880 41 TAGGATCATCCATGAAGATGGCTTCTCCGGAGAAGACGTGA TAGGATCATCCATGAAGATTGCTTCTCCGGAGAAGACGTGA < 41bp 0.547689014490015 0.84327193016707 NA NA prediction 0.591165831354109 Functional Gain - GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56309860 chr16:56309859 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14087 0 0 0 0 1 GNAO1 chr16:56309843 3'AG 56309843 Downstream 17bp 13538 chr16 77910312 77910312 1 + G T BLCA 77910313 + 77910293 77910333 41 TTTTGGATTGCCTCTGTGGGGACAACACTGGAAAAGGTCTC TTTTGGATTGCCTCTGTGGTGACAACACTGGAAAAGGTCTC < 41bp 0.486724666032641 0.795567975606158 NA NA prediction 0.591135951212315 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77910313 chr16:77910312 synonymous SNV . 0 20 hm7G_associated_SNPs_14088 0 0 0 0 2 VAT1L chr16:77910267 3'AG 77910267 Downstream 46bp 13539 chr16 77910312 77910312 1 + G T BLCA 77910313 + 77910293 77910333 41 TTTTGGATTGCCTCTGTGGGGACAACACTGGAAAAGGTCTC TTTTGGATTGCCTCTGTGGTGACAACACTGGAAAAGGTCTC < 41bp 0.486724666032641 0.795567975606158 NA NA prediction 0.591135951212315 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77910313 chr16:77910312 synonymous SNV . 0 20 hm7G_associated_SNPs_14088 0 0 0 0 2 VAT1L chr16:77910370 5'GT 77910370 Upstream 59bp 13540 chr1 203028924 203028924 1 + G T UCEC 203028925 + 203028905 203028945 41 CTGCTTGAAGATGCCCGCAGGAAAGGAATGCCCTTTGCCCA CTGCTTGAAGATGCCCGCATGAAAGGAATGCCCTTTGCCCA < 41bp 0.476241902207893 0.79555244746452 NA NA prediction 0.591104894929039 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203028925 chr1:203028924 nonsynonymous SNV 0.898 2 20 hm7G_associated_SNPs_14089 0 0 1 0 2 PPFIA4 chr1:203028898 3'AG 203028898 Downstream 27bp 13541 chr1 203028924 203028924 1 + G T UCEC 203028925 + 203028905 203028945 41 CTGCTTGAAGATGCCCGCAGGAAAGGAATGCCCTTTGCCCA CTGCTTGAAGATGCCCGCATGAAAGGAATGCCCTTTGCCCA < 41bp 0.476241902207893 0.79555244746452 NA NA prediction 0.591104894929039 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203028925 chr1:203028924 nonsynonymous SNV 0.898 2 20 hm7G_associated_SNPs_14089 0 0 1 0 2 PPFIA4 chr1:203028979 5'GT 203028979 Upstream 56bp 13542 chr1 154988233 154988233 1 + G T UCEC 154988234 + 154988214 154988254 41 AAACTGCCTCGCCACATGAGGACCCACACAGGCGAGAAGCC AAACTGCCTCGCCACATGATGACCCACACAGGCGAGAAGCC < 41bp 0.478042668164402 0.79555215316018 NA NA prediction 0.591104306320359 Functional Gain - ZBTB7B ENSG00000160685 CDS Human protein_coding chr1:154988234 chr1:154988233 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14090 0 0 1 0 1 ZBTB7B chr1:154988290 5'GT 154988290 Upstream 58bp 13543 chr15 78805460 78805460 1 + G T LUSC 78805461 + 78805441 78805481 41 GAAACTATCAGCAGTCAGAGGCTCTTAGCAAACCCACTTTC GAAACTATCAGCAGTCAGATGCTCTTAGCAAACCCACTTTC < 41bp 0.48868011747752 0.79554477191994 NA NA prediction 0.591089543839879 Functional Gain - HYKK ENSG00000188266 CDS Human protein_coding chr15:78805461 chr15:78805460 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_14091 0 0 0 0 1 HYKK chr15:78805426 3'AG 78805426 Downstream 35bp 13544 chr15 100214679 100214679 1 + G T UCEC 100214680 + 100214660 100214700 41 TTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCCCAT TTTGTCCTACACTAACCCATGGAGTTCACTGGTGTCCCCAT < 41bp 0.532717020139394 0.828257850389288 NA NA prediction 0.591081660499787 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100214680 chr15:100214679 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14092 0 0 1 0 1 MEF2A chr15:100214598 3'AG 100214598 Downstream 82bp 13545 chrX 16836980 16836980 1 + G T UCEC 16836981 + 16836961 16837001 41 CAAGATTCAGAGTGCAACAGGAACAAAGAAAAAACTTTAGG CAAGATTCAGAGTGCAACATGAACAAAGAAAAAACTTTAGG < 41bp 0.496279319955273 0.795525426523785 NA NA prediction 0.59105085304757 Functional Gain - TXLNG ENSG00000086712 CDS Human protein_coding chrX:16836981 chrX:16836980 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14093 0 0 1 0 1 TXLNG chrX:16837000 5'GT 16837000 Upstream 21bp 13546 chrX 16170424 16170424 1 + G T LUAD 16170425 + 16170405 16170445 41 GACAGTGCTGGTGTTTGTGGGCCTGTTCGCCTTCTGCTGGC GACAGTGCTGGTGTTTGTGTGCCTGTTCGCCTTCTGCTGGC < 41bp 0.499829739155243 0.795522086528904 NA NA prediction 0.591044173057808 Functional Gain - GRPR ENSG00000126010 CDS Human protein_coding chrX:16170425 chrX:16170424 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_14094 0 0 0 0 1 GRPR chrX:16170379 3'AG 16170379 Downstream 46bp 13547 chr2 95843287 95843287 1 + G T LUAD 95843288 + 95843268 95843308 41 ATGAAGAGTGGAGTCGTCTGGTCCCCATACAGAGGGACCTC ATGAAGAGTGGAGTCGTCTTGTCCCCATACAGAGGGACCTC < 41bp 0.477777783122099 0.795516529948446 NA NA prediction 0.591033059896891 Functional Gain - ZNF2 ENSG00000163067 CDS Human other chr2:95843288 chr2:95843287 synonymous SNV . 0 20 hm7G_associated_SNPs_14095 0 0 1 0 2 ZNF2 chr2:95843228 3'AG 95843228 Downstream 60bp 13548 chr2 95843287 95843287 1 + G T LUAD 95843288 + 95843268 95843308 41 ATGAAGAGTGGAGTCGTCTGGTCCCCATACAGAGGGACCTC ATGAAGAGTGGAGTCGTCTTGTCCCCATACAGAGGGACCTC < 41bp 0.477777783122099 0.795516529948446 NA NA prediction 0.591033059896891 Functional Gain - ZNF2 ENSG00000163067 CDS Human other chr2:95843288 chr2:95843287 synonymous SNV . 0 20 hm7G_associated_SNPs_14095 0 0 1 0 2 ZNF2 chr2:95843354 5'GT 95843354 Upstream 68bp 13549 chr9 96408012 96408012 1 + G T LUAD 96408013 + 96407993 96408033 41 CTCGTCCCTAAGAAAGACGGGCTGGGTCTGGCTGTCCCGGC CTCGTCCCTAAGAAAGACGTGCTGGGTCTGGCTGTCCCGGC < 41bp 0.546556420171541 0.842055429225882 NA NA prediction 0.590998018108682 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96408013 chr9:96408012 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_14097 0 0 1 0 1 PHF2 chr9:96408071 5'GT 96408071 Upstream 60bp 13550 chr4 74350026 74350026 1 + G T READ 74350027 + 74350007 74350047 41 AAGCAACCTTTGAAGAAATGGAAAAGCTGGTGAAAGACATG AAGCAACCTTTGAAGAAATTGAAAAGCTGGTGAAAGACATG < 41bp 0.498416819537935 0.795495946639132 NA NA prediction 0.590991893278265 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74350027 chr4:74350026 nonsynonymous SNV 0.068 0 20 hm7G_associated_SNPs_14098 0 0 0 0 2 AFM chr4:74349975 3'AG 74349975 Downstream 52bp 13551 chr4 74350026 74350026 1 + G T READ 74350027 + 74350007 74350047 41 AAGCAACCTTTGAAGAAATGGAAAAGCTGGTGAAAGACATG AAGCAACCTTTGAAGAAATTGAAAAGCTGGTGAAAGACATG < 41bp 0.498416819537935 0.795495946639132 NA NA prediction 0.590991893278265 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74350027 chr4:74350026 nonsynonymous SNV 0.068 0 20 hm7G_associated_SNPs_14098 0 0 0 0 2 AFM chr4:74350107 5'GT 74350107 Upstream 82bp 13552 chr8 120940732 120940732 1 + G T LUAD 120940733 + 120940713 120940753 41 GCAAAAGAACTGATTGACTGGCTGATTGAACACAAAGAGGC GCAAAAGAACTGATTGACTTGCTGATTGAACACAAAGAGGC < 41bp 0.526191014803545 0.821674312593582 NA NA prediction 0.590966595580073 Functional Gain - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:120940733 chr8:120940732 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14100 0 0 0 0 2 DEPTOR chr8:120940640 3'AG 120940640 Downstream 93bp 13553 chr8 120940732 120940732 1 + G T LUAD 120940733 + 120940713 120940753 41 GCAAAAGAACTGATTGACTGGCTGATTGAACACAAAGAGGC GCAAAAGAACTGATTGACTTGCTGATTGAACACAAAGAGGC < 41bp 0.526191014803545 0.821674312593582 NA NA prediction 0.590966595580073 Functional Gain - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:120940733 chr8:120940732 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14100 0 0 0 0 2 DEPTOR chr8:120940818 5'GT 120940818 Upstream 87bp 13554 chr14 24621044 24621044 1 + G T LUAD 24621045 + 24621025 24621065 41 GCACTCCCCAGCTGGGGCCGGGCAGAGCTGGCACTGTCACT GCACTCCCCAGCTGGGGCCTGGCAGAGCTGGCACTGTCACT < 41bp 0.464381965119584 0.795483240498223 NA NA prediction 0.590966480996446 Functional Gain - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24621045 chr14:24621044 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14101 0 0 1 0 1 RNF31 chr14:24620995 3'AG 24620995 Downstream 50bp 13555 chr20 2312896 2312896 1 + G T STAD 2312897 + 2312877 2312917 41 CTGGACCATCATCTACAACGGCACGCTTGTACATGAAGTGT CTGGACCATCATCTACAACTGCACGCTTGTACATGAAGTGT < 41bp 0.525203078541613 0.820651217318865 NA NA prediction 0.590896277554505 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2312897 chr20:2312896 nonsynonymous SNV 0.333 5 20 hm7G_associated_SNPs_14105 0 0 0 0 1 TGM3 chr20:2312956 5'GT 2312956 Upstream 61bp 13556 chr19 3746849 3746849 1 + G T CESC 3746850 + 3746830 3746870 41 ATTCGAGAGCAGCAGACGCGGCCCATCTGGACGGCGGAAGA ATTCGAGAGCAGCAGACGCTGCCCATCTGGACGGCGGAAGA < 41bp 0.54886451563246 0.844310988933277 NA NA prediction 0.590892946601635 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746850 chr19:3746849 nonsynonymous SNV 0.841 2 20 hm7G_associated_SNPs_14106 0 0 0 0 2 TJP3 chr19:3746774 3'AG 3746774 Downstream 76bp 13557 chr19 3746849 3746849 1 + G T CESC 3746850 + 3746830 3746870 41 ATTCGAGAGCAGCAGACGCGGCCCATCTGGACGGCGGAAGA ATTCGAGAGCAGCAGACGCTGCCCATCTGGACGGCGGAAGA < 41bp 0.54886451563246 0.844310988933277 NA NA prediction 0.590892946601635 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3746850 chr19:3746849 nonsynonymous SNV 0.841 2 20 hm7G_associated_SNPs_14106 0 0 0 0 2 TJP3 chr19:3746874 5'GT 3746874 Upstream 26bp 13558 chr12 20774323 20774323 1 + G T LUSC 20774324 + 20774304 20774344 41 CTGCAGCTAACCATGTAAAGGCTAAAAAGCAAAGTCGACCA CTGCAGCTAACCATGTAAATGCTAAAAAGCAAAGTCGACCA < 41bp 0.486942397134722 0.795401314208093 NA NA prediction 0.590802628416186 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20774324 chr12:20774323 nonsynonymous SNV 0.989 0 20 hm7G_associated_SNPs_14108 0 0 1 0 2 PDE3A chr12:20774230 3'AG 20774230 Downstream 94bp 13559 chr12 20774323 20774323 1 + G T LUSC 20774324 + 20774304 20774344 41 CTGCAGCTAACCATGTAAAGGCTAAAAAGCAAAGTCGACCA CTGCAGCTAACCATGTAAATGCTAAAAAGCAAAGTCGACCA < 41bp 0.486942397134722 0.795401314208093 NA NA prediction 0.590802628416186 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20774324 chr12:20774323 nonsynonymous SNV 0.989 0 20 hm7G_associated_SNPs_14108 0 0 1 0 2 PDE3A chr12:20774345 5'GT 20774345 Upstream 23bp 13560 chr3 38418460 38418460 1 + G T UCEC 38418461 + 38418441 38418481 41 GAAATTATTGGACGTCATAGGTTTAACACAGAAAACCACAA GAAATTATTGGACGTCATATGTTTAACACAGAAAACCACAA < 41bp 0.510627608484659 0.806022066261698 NA NA prediction 0.590788915554077 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38418461 chr3:38418460 nonsynonymous SNV 0.524 4 20 hm7G_associated_SNPs_14111 0 0 1 0 2 XYLB chr3:38418409 3'AG 38418409 Downstream 52bp 13561 chr3 38418460 38418460 1 + G T UCEC 38418461 + 38418441 38418481 41 GAAATTATTGGACGTCATAGGTTTAACACAGAAAACCACAA GAAATTATTGGACGTCATATGTTTAACACAGAAAACCACAA < 41bp 0.510627608484659 0.806022066261698 NA NA prediction 0.590788915554077 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38418461 chr3:38418460 nonsynonymous SNV 0.524 4 20 hm7G_associated_SNPs_14111 0 0 1 0 2 XYLB chr3:38418482 5'GT 38418482 Upstream 23bp 13562 chr17 73094155 73094155 1 + G T LUSC 73094156 + 73094136 73094176 41 CCCTGTGCAGCATCCTGGTGGGACGCTTCGGCTGCCGAGTG CCCTGTGCAGCATCCTGGTTGGACGCTTCGGCTGCCGAGTG < 41bp 0.463166905497799 0.795390977647892 NA NA prediction 0.590781955295784 Functional Gain - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73094156 chr17:73094155 synonymous SNV . 0 20 hm7G_associated_SNPs_14112 0 0 0 0 1 SLC16A5 chr17:73094133 3'AG 73094133 Downstream 23bp 13563 chr10 6262820 6262820 1 + G T LUAD 6262821 + 6262801 6262841 41 CTCAGGCCTGTCCAGCCGGGGCAAGAAGGTGCGGGGTGTGC CTCAGGCCTGTCCAGCCGGTGCAAGAAGGTGCGGGGTGTGC < 41bp 0.534525613875783 0.829895252221893 NA NA prediction 0.59073927669222 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262821 chr10:6262820 nonsynonymous SNV 0.971 5 20 hm7G_associated_SNPs_14113 0 0 1 0 1 PFKFB3 chr10:6262828 5'GT 6262828 Upstream 9bp 13564 chr4 22750545 22750545 1 + G T BLCA 22750546 + 22750526 22750566 41 CTTGATGACACTCAACGCTGGGAGTATTTCAGACAAACATT CTTGATGACACTCAACGCTTGGAGTATTTCAGACAAACATT < 41bp 0.498751565810043 0.795368211836597 NA NA prediction 0.590736423673194 Functional Gain - GBA3 ENSG00000249948 CDS Human polymorphic_pseudogene chr4:22750546 chr4:22750545 unknown 1.000 2 20 hm7G_associated_SNPs_14114 0 0 0 0 2 GBA3 chr4:22750460 3'AG 22750460 Downstream 86bp 13565 chr4 22750545 22750545 1 + G T BLCA 22750546 + 22750526 22750566 41 CTTGATGACACTCAACGCTGGGAGTATTTCAGACAAACATT CTTGATGACACTCAACGCTTGGAGTATTTCAGACAAACATT < 41bp 0.498751565810043 0.795368211836597 NA NA prediction 0.590736423673194 Functional Gain - GBA3 ENSG00000249948 CDS Human polymorphic_pseudogene chr4:22750546 chr4:22750545 unknown 1.000 2 20 hm7G_associated_SNPs_14114 0 0 0 0 2 GBA3 chr4:22750583 5'GT 22750583 Upstream 39bp 13566 chr22 29650241 29650241 1 + G T SARC 29650242 + 29650222 29650262 41 TTGAAGATTTTAGCTGAGAGGGTTTTAATCTTGGAAACAAT TTGAAGATTTTAGCTGAGATGGTTTTAATCTTGGAAACAAT < 41bp 0.528934035703126 0.824292872709878 NA NA prediction 0.590717674013506 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29650242 chr22:29650241 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14115 0 0 1 0 2 EMID1 chr22:29650192 3'AG 29650192 Downstream 50bp 13567 chr22 29650241 29650241 1 + G T SARC 29650242 + 29650222 29650262 41 TTGAAGATTTTAGCTGAGAGGGTTTTAATCTTGGAAACAAT TTGAAGATTTTAGCTGAGATGGTTTTAATCTTGGAAACAAT < 41bp 0.528934035703126 0.824292872709878 NA NA prediction 0.590717674013506 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29650242 chr22:29650241 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14115 0 0 1 0 2 EMID1 chr22:29650276 5'GT 29650276 Upstream 36bp 13568 chr16 70691015 70691015 1 + G T LUSC 70691016 + 70690996 70691036 41 TGCTGCTGAATGTCCAGCAGGGCCTCACGGTGAGTTGTGTG TGCTGCTGAATGTCCAGCATGGCCTCACGGTGAGTTGTGTG < 41bp 0.47797555563657 0.79534827611199 NA NA prediction 0.590696552223981 Functional Gain - IL34 ENSG00000157368 CDS Human protein_coding chr16:70691016 chr16:70691015 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_14117 0 0 0 0 1 IL34 chr16:70691024 5'GT 70691024 Upstream 10bp 13569 chr14 104491913 104491913 1 + G T LUAD 104491914 + 104491894 104491934 41 TTTTTAGGTGGTTGAAGTGGGACACTTTTGGGGATACAGGA TTTTTAGGTGGTTGAAGTGTGACACTTTTGGGGATACAGGA < 41bp 0.510581570284926 0.805920921528522 NA NA prediction 0.590678702487193 Functional Gain - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104491914 chr14:104491913 stopgain 0.999 1 20 hm7G_associated_SNPs_14119 0 0 0 0 1 TDRD9 chr14:104491901 3'AG 104491901 Downstream 13bp 13570 chr15 65209596 65209596 1 + G T STAD 65209597 + 65209577 65209617 41 CCGGGCAGGTGGGCAGGGTGGCCCTGCACTGGGCTGCAGGT CCGGGCAGGTGGGCAGGGTTGCCCTGCACTGGGCTGCAGGT < 41bp 0.467412019436603 0.795337686976389 NA NA prediction 0.590675373952779 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65209597 chr15:65209596 synonymous SNV . 0 20 hm7G_associated_SNPs_14120 0 0 0 0 1 ANKDD1A chr15:65209585 3'AG 65209585 Downstream 12bp 13571 chr19 41078274 41078274 1 + G T UCEC 41078275 + 41078255 41078295 41 GCAGTGAGTTTTTGCTCCAGGCAAAAGATGAGGTGAGATCT GCAGTGAGTTTTTGCTCCATGCAAAAGATGAGGTGAGATCT < 41bp 0.517520257053088 0.81285566258739 NA NA prediction 0.590670811068603 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41078275 chr19:41078274 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_14121 0 0 0 0 2 SPTBN4 chr19:41078244 3'AG 41078244 Downstream 31bp 13572 chr19 41078274 41078274 1 + G T UCEC 41078275 + 41078255 41078295 41 GCAGTGAGTTTTTGCTCCAGGCAAAAGATGAGGTGAGATCT GCAGTGAGTTTTTGCTCCATGCAAAAGATGAGGTGAGATCT < 41bp 0.517520257053088 0.81285566258739 NA NA prediction 0.590670811068603 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41078275 chr19:41078274 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_14121 0 0 0 0 2 SPTBN4 chr19:41078286 5'GT 41078286 Upstream 13bp 13573 chr20 44640883 44640883 1 + G T OV 44640884 + 44640864 44640904 41 CAGCGAGGGCCGCGGAGATGGGCGCCTCTGGTGCGCTACCA CAGCGAGGGCCGCGGAGATTGGCGCCTCTGGTGCGCTACCA < 41bp 0.560962015155192 0.856285801752221 NA NA prediction 0.590647573194058 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640884 chr20:44640883 nonsynonymous SNV 0.822 4 20 hm7G_associated_SNPs_14123 0 0 0 0 1 MMP9 chr20:44640952 5'GT 44640952 Upstream 70bp 13574 chr9 96437269 96437269 1 + G T STAD 96437270 + 96437250 96437290 41 AAGTCCCGGTCGAAGAAAAGGAAAGGCTCAGACGACGCTCC AAGTCCCGGTCGAAGAAAATGAAAGGCTCAGACGACGCTCC < 41bp 0.544883143250284 0.840193225985256 NA NA prediction 0.590620165469944 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96437270 chr9:96437269 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14124 0 0 1 0 2 PHF2 chr9:96437209 3'AG 96437209 Downstream 61bp 13575 chr9 96437269 96437269 1 + G T STAD 96437270 + 96437250 96437290 41 AAGTCCCGGTCGAAGAAAAGGAAAGGCTCAGACGACGCTCC AAGTCCCGGTCGAAGAAAATGAAAGGCTCAGACGACGCTCC < 41bp 0.544883143250284 0.840193225985256 NA NA prediction 0.590620165469944 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96437270 chr9:96437269 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14124 0 0 1 0 2 PHF2 chr9:96437304 5'GT 96437304 Upstream 36bp 13576 chr2 48033489 48033489 1 + G T UCEC 48033490 + 48033470 48033510 41 AAATGTTGCTGTGCGCCTAGGACATATGGTATGTGCAAATT AAATGTTGCTGTGCGCCTATGACATATGGTATGTGCAAATT < 41bp 0.502056595483294 0.79734573706063 NA NA prediction 0.590578283154673 Functional Gain - MSH6 ENSG00000116062 CDS Human protein_coding chr2:48033490 chr2:48033489 stopgain 0.994 1 20 hm7G_associated_SNPs_14126 0 0 1 0 1 MSH6 chr2:48033497 5'GT 48033497 Upstream 9bp 13577 chr16 53504351 53504351 1 + G T LUAD 53504352 + 53504332 53504372 41 TGTCCAAGTCAATGTTGGGGGGCAGGCACAAGCTGTGACAG TGTCCAAGTCAATGTTGGGTGGCAGGCACAAGCTGTGACAG < 41bp 0.477437273823711 0.795288610748671 NA NA prediction 0.590577221497341 Functional Gain - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53504352 chr16:53504351 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_14127 0 0 1 0 1 RBL2 chr16:53504295 3'AG 53504295 Downstream 57bp 13578 chr6 161533735 161533735 1 + G T UCEC 161533736 + 161533716 161533756 41 AGTCATCACTCGTGCCAAAGGAGAGGGCCATGGGCGTGCGG AGTCATCACTCGTGCCAAATGAGAGGGCCATGGGCGTGCGG < 41bp 0.527165745326885 0.822443518060807 NA NA prediction 0.590555545467844 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161533736 chr6:161533735 stopgain 0.995 1 20 hm7G_associated_SNPs_14129 0 0 1 0 2 MAP3K4 chr6:161533700 3'AG 161533700 Downstream 36bp 13579 chr6 161533735 161533735 1 + G T UCEC 161533736 + 161533716 161533756 41 AGTCATCACTCGTGCCAAAGGAGAGGGCCATGGGCGTGCGG AGTCATCACTCGTGCCAAATGAGAGGGCCATGGGCGTGCGG < 41bp 0.527165745326885 0.822443518060807 NA NA prediction 0.590555545467844 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161533736 chr6:161533735 stopgain 0.995 1 20 hm7G_associated_SNPs_14129 0 0 1 0 2 MAP3K4 chr6:161533806 5'GT 161533806 Upstream 72bp 13580 chr21 47537842 47537842 1 + G T STAD 47537843 + 47537823 47537863 41 AGGGGAGCGAGGAGACCAAGGCGGCAAGGTAAGTGGCCTTG AGGGGAGCGAGGAGACCAATGCGGCAAGGTAAGTGGCCTTG < 41bp 0.552409869327155 0.847682847027068 NA NA prediction 0.590545955399827 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47537843 chr21:47537842 nonsynonymous SNV 0.108 5 20 hm7G_associated_SNPs_14130 0 0 0 0 2 COL6A2 chr21:47537788 3'AG 47537788 Downstream 55bp 13581 chr21 47537842 47537842 1 + G T STAD 47537843 + 47537823 47537863 41 AGGGGAGCGAGGAGACCAAGGCGGCAAGGTAAGTGGCCTTG AGGGGAGCGAGGAGACCAATGCGGCAAGGTAAGTGGCCTTG < 41bp 0.552409869327155 0.847682847027068 NA NA prediction 0.590545955399827 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47537843 chr21:47537842 nonsynonymous SNV 0.108 5 20 hm7G_associated_SNPs_14130 0 0 0 0 2 COL6A2 chr21:47537850 5'GT 47537850 Upstream 9bp 13582 chr2 220414535 220414535 1 + G T STAD 220414536 + 220414516 220414556 41 CTATGAGTATGGGTCCCGGGGACCTCTGACAGCCTGCTCAG CTATGAGTATGGGTCCCGGTGACCTCTGACAGCCTGCTCAG < 41bp 0.525914304476884 0.821176758271246 NA NA prediction 0.590524907588726 Functional Gain - TMEM198 ENSG00000188760 CDS Human protein_coding chr2:220414536 chr2:220414535 stopgain 0.998 0 20 hm7G_associated_SNPs_14132 0 0 0 0 1 TMEM198 chr2:220414439 3'AG 220414439 Downstream 97bp 13583 chr16 20494445 20494445 1 + G T SKCM 20494446 + 20494426 20494466 41 ACCCAGAACAGCTCACCAAGGAGCTGCAGCAGCATGTGAAG ACCCAGAACAGCTCACCAATGAGCTGCAGCAGCATGTGAAG < 41bp 0.472155322341783 0.79524319398971 NA NA prediction 0.590486387979419 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20494446 chr16:20494445 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_14134 0 0 0 0 2 ACSM2A chr16:20494380 3'AG 20494380 Downstream 66bp 13584 chr16 20494445 20494445 1 + G T SKCM 20494446 + 20494426 20494466 41 ACCCAGAACAGCTCACCAAGGAGCTGCAGCAGCATGTGAAG ACCCAGAACAGCTCACCAATGAGCTGCAGCAGCATGTGAAG < 41bp 0.472155322341783 0.79524319398971 NA NA prediction 0.590486387979419 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20494446 chr16:20494445 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_14134 0 0 0 0 2 ACSM2A chr16:20494499 5'GT 20494499 Upstream 55bp 13585 chr11 15197607 15197607 1 + G T UCEC 15197608 + 15197588 15197628 41 GAGTACAGTGCTGTCAGCAGGAACTCCTTGAAGGAAATGGG GAGTACAGTGCTGTCAGCATGAACTCCTTGAAGGAAATGGG < 41bp 0.473085903114613 0.795233063124053 NA NA prediction 0.590466126248107 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15197608 chr11:15197607 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14136 0 0 0 0 1 INSC chr11:15197632 5'GT 15197632 Upstream 26bp 13586 chr17 8160251 8160251 1 + G T UCEC 8160252 + 8160232 8160272 41 CGTGGTGGCTGGCACTGCCGGCTATTGCTTTGGAAATCTGC CGTGGTGGCTGGCACTGCCTGCTATTGCTTTGGAAATCTGC < 41bp 0.460289322779364 0.795230726162514 NA NA prediction 0.590461452325028 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8160252 chr17:8160251 nonsynonymous SNV 0.939 4 20 hm7G_associated_SNPs_14137 0 0 1 0 2 PFAS chr17:8160153 3'AG 8160153 Downstream 99bp 13587 chr17 8160251 8160251 1 + G T UCEC 8160252 + 8160232 8160272 41 CGTGGTGGCTGGCACTGCCGGCTATTGCTTTGGAAATCTGC CGTGGTGGCTGGCACTGCCTGCTATTGCTTTGGAAATCTGC < 41bp 0.460289322779364 0.795230726162514 NA NA prediction 0.590461452325028 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8160252 chr17:8160251 nonsynonymous SNV 0.939 4 20 hm7G_associated_SNPs_14137 0 0 1 0 2 PFAS chr17:8160281 5'GT 8160281 Upstream 31bp 13588 chr10 93741962 93741962 1 + G T LUAD 93741963 + 93741943 93741983 41 GGGATTTTGTAGTTATGCGGGCCAGAATGATGGCAGCCAAG GGGATTTTGTAGTTATGCGTGCCAGAATGATGGCAGCCAAG < 41bp 0.480081572171609 0.795216722234296 NA NA prediction 0.590433444468591 Functional Gain - BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93741963 chr10:93741962 synonymous SNV . 0 20 hm7G_associated_SNPs_14138 0 0 1 0 1 BTAF1 chr10:93741982 5'GT 93741982 Upstream 21bp 13589 chr16 15490051 15490051 1 + G T UCEC 15490052 + 15490032 15490072 41 GTGCGCCCATCGCGGTCTCGGCCTTCTATGTCGGTGAGGGG GTGCGCCCATCGCGGTCTCTGCCTTCTATGTCGGTGAGGGG < 41bp 0.477519734445284 0.795215006338056 NA NA prediction 0.590430012676112 Functional Gain - MPV17L ENSG00000156968;ENSG00000261130 CDS Human other chr16:15490052 chr16:15490051 synonymous SNV . 0 20 hm7G_associated_SNPs_14139 0 0 1 0 1 MPV17L chr16:15490064 5'GT 15490064 Upstream 14bp 13590 chr2 31472333 31472333 1 + G T LUAD 31472334 + 31472314 31472354 41 AGAAGCAGAGGATCAGCCGGGGTAAGCAACCTGCCTGAGGG AGAAGCAGAGGATCAGCCGTGGTAAGCAACCTGCCTGAGGG < 41bp 0.476618908551793 0.795211222292799 NA NA prediction 0.590422444585598 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31472334 chr2:31472333 synonymous SNV . 0 20 hm7G_associated_SNPs_14140 0 0 0 0 2 EHD3 chr2:31472237 3'AG 31472237 Downstream 97bp 13591 chr2 31472333 31472333 1 + G T LUAD 31472334 + 31472314 31472354 41 AGAAGCAGAGGATCAGCCGGGGTAAGCAACCTGCCTGAGGG AGAAGCAGAGGATCAGCCGTGGTAAGCAACCTGCCTGAGGG < 41bp 0.476618908551793 0.795211222292799 NA NA prediction 0.590422444585598 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31472334 chr2:31472333 synonymous SNV . 0 20 hm7G_associated_SNPs_14140 0 0 0 0 2 EHD3 chr2:31472334 5'GT 31472334 Upstream 2bp 13592 chr7 31592681 31592681 1 + G T UCEC 31592682 + 31592662 31592702 41 ATCTGACAACCTTCAGGAAGGCCAGGAAAAGAGCAAGAGAG ATCTGACAACCTTCAGGAATGCCAGGAAAAGAGCAAGAGAG < 41bp 0.484894447980949 0.795205722334863 NA NA prediction 0.590411444669727 Functional Gain - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31592682 chr7:31592681 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_14141 0 0 0 0 2 CCDC129 chr7:31592616 3'AG 31592616 Downstream 66bp 13593 chr7 31592681 31592681 1 + G T UCEC 31592682 + 31592662 31592702 41 ATCTGACAACCTTCAGGAAGGCCAGGAAAAGAGCAAGAGAG ATCTGACAACCTTCAGGAATGCCAGGAAAAGAGCAAGAGAG < 41bp 0.484894447980949 0.795205722334863 NA NA prediction 0.590411444669727 Functional Gain - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31592682 chr7:31592681 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_14141 0 0 0 0 2 CCDC129 chr7:31592620 3'AG 31592620 Downstream 62bp 13594 chr10 18284624 18284624 1 + G T LUSC 18284625 + 18284605 18284645 41 GGCAGCTGAAATGCCTATAGGCAGTATGACAGCCTCCAACA GGCAGCTGAAATGCCTATATGCAGTATGACAGCCTCCAACA < 41bp 0.5192242498453 0.814416125414927 NA NA prediction 0.590383751139254 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18284625 chr10:18284624 nonsynonymous SNV 0.026 0 20 hm7G_associated_SNPs_14144 0 0 0 0 2 SLC39A12 chr10:18284585 3'AG 18284585 Downstream 40bp 13595 chr10 18284624 18284624 1 + G T LUSC 18284625 + 18284605 18284645 41 GGCAGCTGAAATGCCTATAGGCAGTATGACAGCCTCCAACA GGCAGCTGAAATGCCTATATGCAGTATGACAGCCTCCAACA < 41bp 0.5192242498453 0.814416125414927 NA NA prediction 0.590383751139254 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18284625 chr10:18284624 nonsynonymous SNV 0.026 0 20 hm7G_associated_SNPs_14144 0 0 0 0 2 SLC39A12 chr10:18284651 5'GT 18284651 Upstream 28bp 13596 chr20 49184938 49184938 1 + G T UCEC 49184939 + 49184919 49184959 41 CCCTTTGCCTAACACATGCGGTCACTTTTGGGAGATGGTGT CCCTTTGCCTAACACATGCTGTCACTTTTGGGAGATGGTGT < 41bp 0.479905961284115 0.795190446881312 NA NA prediction 0.590380893762625 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49184939 chr20:49184938 nonsynonymous SNV 0.590 4 20 hm7G_associated_SNPs_14145 0 0 1 0 2 PTPN1 chr20:49184917 3'AG 49184917 Downstream 22bp 13597 chr20 49184938 49184938 1 + G T UCEC 49184939 + 49184919 49184959 41 CCCTTTGCCTAACACATGCGGTCACTTTTGGGAGATGGTGT CCCTTTGCCTAACACATGCTGTCACTTTTGGGAGATGGTGT < 41bp 0.479905961284115 0.795190446881312 NA NA prediction 0.590380893762625 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49184939 chr20:49184938 nonsynonymous SNV 0.590 4 20 hm7G_associated_SNPs_14145 0 0 1 0 2 PTPN1 chr20:49185015 5'GT 49185015 Upstream 78bp 13598 chr5 149425061 149425061 1 + G T LIHC 149425062 + 149425042 149425082 41 AATTCCTGGGCTCTAATGAGGTAAATGTGGAGGACTTTTGG AATTCCTGGGCTCTAATGATGTAAATGTGGAGGACTTTTGG < 41bp 0.488864681473915 0.795167550800861 NA NA prediction 0.590335101601722 Functional Gain - HMGXB3 ENSG00000113716 CDS Human protein_coding chr5:149425062 chr5:149425061 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14148 0 0 1 0 1 HMGXB3 chr5:149425029 3'AG 149425029 Downstream 33bp 13599 chr7 106526616 106526616 1 + G T LUSC 106526617 + 106526597 106526637 41 GACTTCGGGCACATTCTTGGGAATTACAAAAGTTTCCTGGG GACTTCGGGCACATTCTTGTGAATTACAAAAGTTTCCTGGG < 41bp 0.494967472647127 0.795150585084493 NA NA prediction 0.590301170168985 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106526617 chr7:106526616 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14149 0 0 0 0 1 PIK3CG chr7:106526580 3'AG 106526580 Downstream 37bp 13600 chr2 79350017 79350017 1 + G T LUAD 79350018 + 79349998 79350038 41 TGGTCTCCTACAAGTCCTGGGGCATTGGAGCCCCAAGCAGT TGGTCTCCTACAAGTCCTGTGGCATTGGAGCCCCAAGCAGT < 41bp 0.546716323441785 0.841866538329114 NA NA prediction 0.590300429774658 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350018 chr2:79350017 nonsynonymous SNV 0.099 3 20 hm7G_associated_SNPs_14150 0 0 0 0 2 REG1A chr2:79349967 3'AG 79349967 Downstream 51bp 13601 chr2 79350017 79350017 1 + G T LUAD 79350018 + 79349998 79350038 41 TGGTCTCCTACAAGTCCTGGGGCATTGGAGCCCCAAGCAGT TGGTCTCCTACAAGTCCTGTGGCATTGGAGCCCCAAGCAGT < 41bp 0.546716323441785 0.841866538329114 NA NA prediction 0.590300429774658 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79350018 chr2:79350017 nonsynonymous SNV 0.099 3 20 hm7G_associated_SNPs_14150 0 0 0 0 2 REG1A chr2:79350078 5'GT 79350078 Upstream 62bp 13602 chr3 180685967 180685967 1 + G T UCEC 180685968 + 180685948 180685988 41 TGACAGCAGGAGACGCCCAGGAGGAAGAGGCAGAAGTGTTT TGACAGCAGGAGACGCCCATGAGGAAGAGGCAGAAGTGTTT < 41bp 0.48873721254313 0.795144442713602 NA NA prediction 0.590288885427205 Functional Gain - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180685968 chr3:180685967 stopgain 1.000 1 20 hm7G_associated_SNPs_14151 0 0 1 0 1 FXR1 chr3:180686042 5'GT 180686042 Upstream 76bp 13603 chr3 32200390 32200390 1 + G T LUSC 32200391 + 32200371 32200411 41 ATCGTAGCTGTGGGAGCTGGGTTCTGCGACGGCCTCCGCTG ATCGTAGCTGTGGGAGCTGTGTTCTGCGACGGCCTCCGCTG < 41bp 0.527397456532327 0.822531399234734 NA NA prediction 0.590267885404813 Functional Gain - GPD1L ENSG00000152642 CDS Human protein_coding chr3:32200391 chr3:32200390 nonsynonymous SNV 0.934 5 20 hm7G_associated_SNPs_14152 0 0 0 0 1 GPD1L chr3:32200368 3'AG 32200368 Downstream 23bp 13604 chr2 112765988 112765988 1 + G T UCEC 112765989 + 112765969 112766009 41 CTTCACAGCGGGAGATCGAGGAGTTTCTCAGTGAGGCAGCG CTTCACAGCGGGAGATCGATGAGTTTCTCAGTGAGGCAGCG < 41bp 0.471331071985419 0.79510321161917 NA NA prediction 0.590206423238339 Functional Gain - MERTK ENSG00000153208 CDS Human protein_coding chr2:112765989 chr2:112765988 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_14155 0 0 1 0 2 MERTK chr2:112765960 3'AG 112765960 Downstream 29bp 13605 chr2 112765988 112765988 1 + G T UCEC 112765989 + 112765969 112766009 41 CTTCACAGCGGGAGATCGAGGAGTTTCTCAGTGAGGCAGCG CTTCACAGCGGGAGATCGATGAGTTTCTCAGTGAGGCAGCG < 41bp 0.471331071985419 0.79510321161917 NA NA prediction 0.590206423238339 Functional Gain - MERTK ENSG00000153208 CDS Human protein_coding chr2:112765989 chr2:112765988 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_14155 0 0 1 0 2 MERTK chr2:112766052 5'GT 112766052 Upstream 65bp 13606 chr6 151857490 151857490 1 + G T LUAD 151857491 + 151857471 151857511 41 TCGGAAGTCCCGGTCACGCGGGAGCAGTTAAACCACTATCG TCGGAAGTCCCGGTCACGCTGGAGCAGTTAAACCACTATCG < 41bp 0.534652112299998 0.829742541403843 NA NA prediction 0.59018085820769 Functional Gain - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151857491 chr6:151857490 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_14157 0 0 0 0 2 CCDC170 chr6:151857453 3'AG 151857453 Downstream 38bp 13607 chr6 151857490 151857490 1 + G T LUAD 151857491 + 151857471 151857511 41 TCGGAAGTCCCGGTCACGCGGGAGCAGTTAAACCACTATCG TCGGAAGTCCCGGTCACGCTGGAGCAGTTAAACCACTATCG < 41bp 0.534652112299998 0.829742541403843 NA NA prediction 0.59018085820769 Functional Gain - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151857491 chr6:151857490 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_14157 0 0 0 0 2 CCDC170 chr6:151857581 5'GT 151857581 Upstream 92bp 13608 chr11 73067273 73067273 1 + G T LUAD 73067274 + 73067254 73067294 41 ACCATCCACTCCTGCTGGAGGCGCAGCGGAACATCAAGCAG ACCATCCACTCCTGCTGGATGCGCAGCGGAACATCAAGCAG < 41bp 0.550928132839169 0.846012586740362 NA NA prediction 0.590168907802385 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73067274 chr11:73067273 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_14159 0 0 0 0 1 ARHGEF17 chr11:73067220 3'AG 73067220 Downstream 54bp 13609 chr6 7862714 7862714 1 + G T LUAD 7862715 + 7862695 7862735 41 CAGTCCCAGGACGTGGCGCGGGTCTCCAGTGCTTCAGGTGG CAGTCCCAGGACGTGGCGCTGGTCTCCAGTGCTTCAGGTGG < 41bp 0.475643198497144 0.795077647379256 NA NA prediction 0.590155294758512 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862715 chr6:7862714 nonsynonymous SNV 0.549 2 20 hm7G_associated_SNPs_14162 0 0 0 0 1 BMP6 chr6:7862731 5'GT 7862731 Upstream 18bp 13610 chr20 62697832 62697832 1 + G T LUAD 62697833 + 62697813 62697853 41 CTCCTTCTCCTTCCAGGAGGGAGCCATGGATTTGCTGCGGG CTCCTTCTCCTTCCAGGAGTGAGCCATGGATTTGCTGCGGG < 41bp 0.484083623395586 0.795051247844314 NA NA prediction 0.590102495688628 Functional Gain - TCEA2 ENSG00000171703 CDS Human protein_coding chr20:62697833 chr20:62697832 stopgain 0.990 1 20 hm7G_associated_SNPs_14164 0 0 1 0 1 TCEA2 chr20:62697891 5'GT 62697891 Upstream 60bp 13611 chr3 46937299 46937299 1 + G T HNSC 46937300 + 46937280 46937320 41 CAGGAAAGATAAGGCATCTGGGAAGCTCTACCCTGAGTCTG CAGGAAAGATAAGGCATCTTGGAAGCTCTACCCTGAGTCTG < 41bp 0.46041426756002 0.795043099643846 NA NA prediction 0.590086199287692 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937300 chr3:46937299 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_14165 0 0 0 0 2 PTH1R chr3:46937225 3'AG 46937225 Downstream 75bp 13612 chr3 46937299 46937299 1 + G T HNSC 46937300 + 46937280 46937320 41 CAGGAAAGATAAGGCATCTGGGAAGCTCTACCCTGAGTCTG CAGGAAAGATAAGGCATCTTGGAAGCTCTACCCTGAGTCTG < 41bp 0.46041426756002 0.795043099643846 NA NA prediction 0.590086199287692 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937300 chr3:46937299 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_14165 0 0 0 0 2 PTH1R chr3:46937359 5'GT 46937359 Upstream 61bp 13613 chr7 128585964 128585964 1 + G T UCEC 128585965 + 128585945 128585985 41 CCGATCCGGCCAAGTGGAAGGCCAACCTGCGCTGTGCCCTT CCGATCCGGCCAAGTGGAATGCCAACCTGCGCTGTGCCCTT < 41bp 0.541516216197445 0.836545764165346 NA NA prediction 0.590059095935802 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128585965 chr7:128585964 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14168 0 0 0 0 2 IRF5 chr7:128585899 3'AG 128585899 Downstream 66bp 13614 chr7 128585964 128585964 1 + G T UCEC 128585965 + 128585945 128585985 41 CCGATCCGGCCAAGTGGAAGGCCAACCTGCGCTGTGCCCTT CCGATCCGGCCAAGTGGAATGCCAACCTGCGCTGTGCCCTT < 41bp 0.541516216197445 0.836545764165346 NA NA prediction 0.590059095935802 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128585965 chr7:128585964 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14168 0 0 0 0 2 IRF5 chr7:128586060 5'GT 128586060 Upstream 97bp 13615 chr2 99204034 99204034 1 + G T UCEC 99204035 + 99204015 99204055 41 GCTTTCCCCAAGCATTACAGGCCTCCCGAAGGGACTTACGG GCTTTCCCCAAGCATTACATGCCTCCCGAAGGGACTTACGG < 41bp 0.497078138747975 0.795024934819932 NA NA prediction 0.590049869639864 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99204035 chr2:99204034 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14169 0 0 1 0 1 INPP4A chr2:99203939 3'AG 99203939 Downstream 96bp 13616 chr5 139927360 139927360 1 + G T THYM 139927361 + 139927341 139927381 41 TGCCCGATTCCCGGGGGCCGGGACCAGCTGCCCGACTGCTA TGCCCGATTCCCGGGGGCCTGGACCAGCTGCCCGACTGCTA < 41bp 0.52779541623416 0.822809876917029 NA NA prediction 0.590028921365736 Functional Gain - EIF4EBP3 ENSG00000243056 CDS Human protein_coding chr5:139927361 chr5:139927360 nonsynonymous SNV 0.525 0 20 hm7G_associated_SNPs_14170 0 0 0 0 1 EIF4EBP3 chr5:139927425 5'GT 139927425 Upstream 66bp 13617 chr8 19700393 19700393 1 + G T LUSC 19700394 + 19700374 19700414 41 TCCTGCCTTGTACCAGCAAGGCTATCATGCCATACTGCCTC TCCTGCCTTGTACCAGCAATGCTATCATGCCATACTGCCTC < 41bp 0.532289160321943 0.827300314349 NA NA prediction 0.590022308054114 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19700394 chr8:19700393 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14171 0 0 1 0 2 INTS10 chr8:19700359 3'AG 19700359 Downstream 35bp 13618 chr8 19700393 19700393 1 + G T LUSC 19700394 + 19700374 19700414 41 TCCTGCCTTGTACCAGCAAGGCTATCATGCCATACTGCCTC TCCTGCCTTGTACCAGCAATGCTATCATGCCATACTGCCTC < 41bp 0.532289160321943 0.827300314349 NA NA prediction 0.590022308054114 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19700394 chr8:19700393 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14171 0 0 1 0 2 INTS10 chr8:19700438 5'GT 19700438 Upstream 46bp 13619 chr1 150532582 150532582 1 + G T STAD 150532583 + 150532563 150532603 41 ATTGCCCCCTGGTGGTACAGGCCCGGCTCTGCGTCTACCCC ATTGCCCCCTGGTGGTACATGCCCGGCTCTGCGTCTACCCC < 41bp 0.48871799789338 0.795006334813427 NA NA prediction 0.590012669626853 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150532583 chr1:150532582 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14172 0 0 0 0 1 ADAMTSL4 chr1:150532536 3'AG 150532536 Downstream 47bp 13620 chr5 118728655 118728655 1 + G T LUSC 118728656 + 118728636 118728676 41 GAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAAGAA GAGCTCTACAGAGTGACCATGGAGTACACCCAAAACAAGAA < 41bp 0.505490788250431 0.800487055743387 NA NA prediction 0.589992534985912 Functional Gain - TNFAIP8 ENSG00000145779 CDS Human protein_coding chr5:118728656 chr5:118728655 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_14173 0 0 1 0 1 TNFAIP8 chr5:118728647 3'AG 118728647 Downstream 9bp 13621 chr5 148702174 148702174 1 + G T UCEC 148702175 + 148702155 148702195 41 CCATCTCCCACCAGGACGAGGAGCCCGAGCGCCCCACAGGG CCATCTCCCACCAGGACGATGAGCCCGAGCGCCCCACAGGG < 41bp 0.468620699002179 0.794988195670476 NA NA prediction 0.589976391340952 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148702175 chr5:148702174 nonsynonymous SNV 0.409 1 20 hm7G_associated_SNPs_14175 0 0 0 0 1 AFAP1L1 chr5:148702169 3'AG 148702169 Downstream 6bp 13622 chr9 133305979 133305979 1 + G T ACC 133305980 + 133305960 133306000 41 TGGTTTCATCAGGCAGAACGGAGTCTGCACAGGTAAGGCCA TGGTTTCATCAGGCAGAACTGAGTCTGCACAGGTAAGGCCA < 41bp 0.507999300630433 0.802972848108516 NA NA prediction 0.589947094956166 Functional Gain - HMCN2 ENSG00000148357 CDS Human protein_coding chr9:133305980 chr9:133305979 stopgain 0.431 0 20 hm7G_associated_SNPs_14176 0 0 0 0 1 HMCN2 chr9:133305991 5'GT 133305991 Upstream 13bp 13623 chr11 74545744 74545744 1 + G T UCEC 74545745 + 74545725 74545765 41 CTAAACTCCAAGGTGGAAAGGAGTCAGAGCTGTAGTGACAC CTAAACTCCAAGGTGGAAATGAGTCAGAGCTGTAGTGACAC < 41bp 0.524314643354853 0.819270453590329 NA NA prediction 0.589911620470951 Functional Gain - RNF169 ENSG00000166439 CDS Human protein_coding chr11:74545745 chr11:74545744 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14177 0 0 1 0 2 RNF169 chr11:74545721 3'AG 74545721 Downstream 24bp 13624 chr11 74545744 74545744 1 + G T UCEC 74545745 + 74545725 74545765 41 CTAAACTCCAAGGTGGAAAGGAGTCAGAGCTGTAGTGACAC CTAAACTCCAAGGTGGAAATGAGTCAGAGCTGTAGTGACAC < 41bp 0.524314643354853 0.819270453590329 NA NA prediction 0.589911620470951 Functional Gain - RNF169 ENSG00000166439 CDS Human protein_coding chr11:74545745 chr11:74545744 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14177 0 0 1 0 2 RNF169 chr11:74545820 5'GT 74545820 Upstream 77bp 13625 chr3 3179009 3179009 1 + G T STAD 3179010 + 3178990 3179030 41 AGTGAGGGATTTATTAAATGGAGTAAAGCCTCAGGATATAG AGTGAGGGATTTATTAAATTGAGTAAAGCCTCAGGATATAG < 41bp 0.484567010618574 0.794953502746831 NA NA prediction 0.589907005493662 Functional Gain - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3179010 chr3:3179009 stopgain 0.996 1 20 hm7G_associated_SNPs_14178 0 0 1 1 1 TRNT1 chr3:3178944 3'AG 3178944 Downstream 66bp 13626 chr5 176814859 176814859 1 + G T UCEC 176814860 + 176814840 176814880 41 CTGATGCAGGCGGGGGACAGGACTGACTTCCGGCGGTGAGG CTGATGCAGGCGGGGGACATGACTGACTTCCGGCGGTGAGG < 41bp 0.480730076995778 0.794928478627866 NA NA prediction 0.589856957255732 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176814860 chr5:176814859 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14180 0 0 0 0 2 SLC34A1 chr5:176814763 3'AG 176814763 Downstream 97bp 13627 chr5 176814859 176814859 1 + G T UCEC 176814860 + 176814840 176814880 41 CTGATGCAGGCGGGGGACAGGACTGACTTCCGGCGGTGAGG CTGATGCAGGCGGGGGACATGACTGACTTCCGGCGGTGAGG < 41bp 0.480730076995778 0.794928478627866 NA NA prediction 0.589856957255732 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176814860 chr5:176814859 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14180 0 0 0 0 2 SLC34A1 chr5:176814874 5'GT 176814874 Upstream 16bp 13628 chr1 26887237 26887237 1 + G T LUAD 26887238 + 26887218 26887258 41 AACTCCATGGGAAGAACCTGGTTTTTAGTGACGGCTACGTG AACTCCATGGGAAGAACCTTGTTTTTAGTGACGGCTACGTG < 41bp 0.539504563081538 0.834429339393334 NA NA prediction 0.589849552623592 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26887238 chr1:26887237 synonymous SNV . 0 20 hm7G_associated_SNPs_14182 0 0 1 0 1 RPS6KA1 chr1:26887217 3'AG 26887217 Downstream 21bp 13629 chr19 3762721 3762721 1 + G T HNSC 3762722 + 3762702 3762742 41 GCGACCAAACGCCTTTTCGGGGCTACCCGGACGTGGGCCGG GCGACCAAACGCCTTTTCGTGGCTACCCGGACGTGGGCCGG < 41bp 0.485934675018451 0.7949018069171 NA NA prediction 0.589803613834199 Functional Gain - MRPL54 ENSG00000183617 CDS Human protein_coding chr19:3762722 chr19:3762721 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_14183 0 0 1 0 1 MRPL54 chr19:3762816 5'GT 3762816 Upstream 96bp 13630 chr7 31691634 31691634 1 + G T LIHC 31691635 + 31691615 31691655 41 AATTTCAGTTAGGAGACCGGGCTCAGCAAATCAGAGAAGGG AATTTCAGTTAGGAGACCGTGCTCAGCAAATCAGAGAAGGG < 41bp 0.533740453809371 0.828639242121046 NA NA prediction 0.58979757662335 Functional Gain - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31691635 chr7:31691634 synonymous SNV . 0 20 hm7G_associated_SNPs_14184 0 0 0 0 2 CCDC129 chr7:31691553 3'AG 31691553 Downstream 82bp 13631 chr7 31691634 31691634 1 + G T LIHC 31691635 + 31691615 31691655 41 AATTTCAGTTAGGAGACCGGGCTCAGCAAATCAGAGAAGGG AATTTCAGTTAGGAGACCGTGCTCAGCAAATCAGAGAAGGG < 41bp 0.533740453809371 0.828639242121046 NA NA prediction 0.58979757662335 Functional Gain - CCDC129 ENSG00000180347 CDS Human protein_coding chr7:31691635 chr7:31691634 synonymous SNV . 0 20 hm7G_associated_SNPs_14184 0 0 0 0 2 CCDC129 chr7:31691664 5'GT 31691664 Upstream 31bp 13632 chr5 112915367 112915367 1 + G T PRAD 112915368 + 112915348 112915388 41 GCCTTGAAACTTGATGAGTGGCTCCATTTCACACTGGAGCC GCCTTGAAACTTGATGAGTTGCTCCATTTCACACTGGAGCC < 41bp 0.486734254406446 0.794887823472734 NA NA prediction 0.589775646945467 Functional Gain - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112915368 chr5:112915367 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14185 0 0 1 0 2 YTHDC2 chr5:112915283 3'AG 112915283 Downstream 85bp 13633 chr5 112915367 112915367 1 + G T PRAD 112915368 + 112915348 112915388 41 GCCTTGAAACTTGATGAGTGGCTCCATTTCACACTGGAGCC GCCTTGAAACTTGATGAGTTGCTCCATTTCACACTGGAGCC < 41bp 0.486734254406446 0.794887823472734 NA NA prediction 0.589775646945467 Functional Gain - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112915368 chr5:112915367 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14185 0 0 1 0 2 YTHDC2 chr5:112915392 5'GT 112915392 Upstream 26bp 13634 chr11 5663669 5663669 1 + G T rs62638662 5663670 + 5663650 5663690 41 GGCTGAAAAAGCCAAAAATGGTTTCCAAGAAACTGAAGACT GGCTGAAAAAGCCAAAAATTGTTTCCAAGAAACTGAAGACT < 41bp 0.488131393866673 0.794879726290894 NA NA prediction 0.589759452581787 Functional Gain - TRIM34;TRIM6-TRIM34 ENSG00000258588;ENSG00000258659 CDS Human other chr11:5663670 chr11:5663669 nonsynonymous SNV 0.083 0 20 hm7G_associated_SNPs_14186 0 0 0 0 2 TRIM34;TRIM6-TRIM34 chr11:5663636 3'AG 5663636 Downstream 34bp 13635 chr11 5663669 5663669 1 + G T rs62638662 5663670 + 5663650 5663690 41 GGCTGAAAAAGCCAAAAATGGTTTCCAAGAAACTGAAGACT GGCTGAAAAAGCCAAAAATTGTTTCCAAGAAACTGAAGACT < 41bp 0.488131393866673 0.794879726290894 NA NA prediction 0.589759452581787 Functional Gain - TRIM34;TRIM6-TRIM34 ENSG00000258588;ENSG00000258659 CDS Human other chr11:5663670 chr11:5663669 nonsynonymous SNV 0.083 0 20 hm7G_associated_SNPs_14186 0 0 0 0 2 TRIM34;TRIM6-TRIM34 chr11:5663736 5'GT 5663736 Upstream 68bp 13636 chr8 39871208 39871208 1 + G T COAD 39871209 + 39871189 39871229 41 TGCCTTTGATGAGTTCTTAGGCATTCGTCATAGCAAGGAAA TGCCTTTGATGAGTTCTTATGCATTCGTCATAGCAAGGAAA < 41bp 0.48289354593702 0.794869028823249 NA NA prediction 0.589738057646499 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871209 chr8:39871208 nonsynonymous SNV 0.119 4 20 hm7G_associated_SNPs_14187 0 0 0 0 1 IDO2 chr8:39871232 5'GT 39871232 Upstream 25bp 13637 chr8 67064700 67064700 1 + G T UCEC 67064701 + 67064681 67064721 41 AAGCAGTAGAAGTGGAAGAGGTAGAAAATGTTCAAACAGAG AAGCAGTAGAAGTGGAAGATGTAGAAAATGTTCAAACAGAG < 41bp 0.502616332196754 0.797432890488826 NA NA prediction 0.589633116584144 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67064701 chr8:67064700 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_14192 0 0 0 0 1 TRIM55 chr8:67064612 3'AG 67064612 Downstream 89bp 13638 chr1 160099947 160099947 1 + G T LUAD 160099948 + 160099928 160099968 41 CACGTGCTGGTGATGAAGGGGGCCCCAGAGCGCATTCTGGA CACGTGCTGGTGATGAAGGTGGCCCCAGAGCGCATTCTGGA < 41bp 0.467127442686397 0.794805264848574 NA NA prediction 0.589610529697148 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160099948 chr1:160099947 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_14194 0 0 0 0 1 ATP1A2 chr1:160099892 3'AG 160099892 Downstream 56bp 13639 chr20 2381054 2381054 1 + G T LUAD 2381055 + 2381035 2381075 41 AAATACGTGGACTCCTTCGGGCGGACCCTGGAGGACCTGAC AAATACGTGGACTCCTTCGTGCGGACCCTGGAGGACCTGAC < 41bp 0.47410550235187 0.79480221109647 NA NA prediction 0.58960442219294 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2381055 chr20:2381054 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_14195 0 0 0 0 1 TGM6 chr20:2381090 5'GT 2381090 Upstream 37bp 13640 chrX 70350024 70350024 1 + G T SARC 70350025 + 70350005 70350045 41 CTGCTGGACAATGAGGATGGGGAAAACCCCCAGCGGCAGCG CTGCTGGACAATGAGGATGTGGAAAACCCCCAGCGGCAGCG < 41bp 0.479033666969912 0.794796797104434 NA NA prediction 0.589593594208867 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70350025 chrX:70350024 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14197 0 0 1 0 1 MED12 chrX:70350064 5'GT 70350064 Upstream 41bp 13641 chr7 106524666 106524666 1 + G T LUSC 106524667 + 106524647 106524687 41 TGTGGCAACCTTTGTTCTTGGAATAGGCGACAGACACAATG TGTGGCAACCTTTGTTCTTTGAATAGGCGACAGACACAATG < 41bp 0.520086562233189 0.8148712437557 NA NA prediction 0.589569363045022 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106524667 chr7:106524666 stopgain 0.995 1 20 hm7G_associated_SNPs_14198 0 0 0 0 2 PIK3CG chr7:106524600 3'AG 106524600 Downstream 67bp 13642 chr7 106524666 106524666 1 + G T LUSC 106524667 + 106524647 106524687 41 TGTGGCAACCTTTGTTCTTGGAATAGGCGACAGACACAATG TGTGGCAACCTTTGTTCTTTGAATAGGCGACAGACACAATG < 41bp 0.520086562233189 0.8148712437557 NA NA prediction 0.589569363045022 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106524667 chr7:106524666 stopgain 0.995 1 20 hm7G_associated_SNPs_14198 0 0 0 0 2 PIK3CG chr7:106524711 5'GT 106524711 Upstream 46bp 13643 chr8 2046747 2046747 1 + G T LUAD 2046748 + 2046728 2046768 41 CGCCGCCGTCAACCTGGCCGGCATCGGGGAGCCCTCAGATC CGCCGCCGTCAACCTGGCCTGCATCGGGGAGCCCTCAGATC < 41bp 0.554623691984253 0.849406177761349 NA NA prediction 0.589564971554194 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2046748 chr8:2046747 nonsynonymous SNV 0.023 4 20 hm7G_associated_SNPs_14199 0 0 0 0 2 MYOM2 chr8:2046687 3'AG 2046687 Downstream 61bp 13644 chr8 2046747 2046747 1 + G T LUAD 2046748 + 2046728 2046768 41 CGCCGCCGTCAACCTGGCCGGCATCGGGGAGCCCTCAGATC CGCCGCCGTCAACCTGGCCTGCATCGGGGAGCCCTCAGATC < 41bp 0.554623691984253 0.849406177761349 NA NA prediction 0.589564971554194 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2046748 chr8:2046747 nonsynonymous SNV 0.023 4 20 hm7G_associated_SNPs_14199 0 0 0 0 2 MYOM2 chr8:2046813 5'GT 2046813 Upstream 67bp 13645 chr16 57762412 57762412 1 + G T CESC 57762413 + 57762393 57762433 41 AACTAACATGCTGGCAGGCGGTGCGCCTCAAGGATGAGTGC AACTAACATGCTGGCAGGCTGTGCGCCTCAAGGATGAGTGC < 41bp 0.52491944649527 0.81967846348773 NA NA prediction 0.589518033984921 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57762413 chr16:57762412 synonymous SNV . 0 20 hm7G_associated_SNPs_14200 0 0 0 0 1 DRC7 chr16:57762496 5'GT 57762496 Upstream 85bp 13646 chr12 50499363 50499363 1 + G T UCEC 50499364 + 50499344 50499384 41 ATGTGGTCCAGGCTGCAGAGGATGCTGACATCCTGATCTTT ATGTGGTCCAGGCTGCAGATGATGCTGACATCCTGATCTTT < 41bp 0.544511116037754 0.839266460556825 NA NA prediction 0.589510689038141 Functional Gain - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50499364 chr12:50499363 nonsynonymous SNV 0.407 1 20 hm7G_associated_SNPs_14202 0 0 0 0 1 GPD1 chr12:50499331 3'AG 50499331 Downstream 33bp 13647 chr17 80897247 80897247 1 + G T LIHC 80897248 + 80897228 80897268 41 GCATCCCTGTCCCAGATCCGGAAGACCACGGCCAGCCAGGT GCATCCCTGTCCCAGATCCTGAAGACCACGGCCAGCCAGGT < 41bp 0.480540481247233 0.794746557877253 NA NA prediction 0.589493115754505 Functional Gain - TBCD ENSG00000141556 CDS Human protein_coding chr17:80897248 chr17:80897247 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_14204 0 0 1 0 1 TBCD chr17:80897243 3'AG 80897243 Downstream 5bp 13648 chr13 48619847 48619847 1 + G T LIHC 48619848 + 48619828 48619868 41 CCCCTGGACCAGCTTTTCTGGGGACTGCGTTGTTTAAAAGA CCCCTGGACCAGCTTTTCTTGGGACTGCGTTGTTTAAAAGA < 41bp 0.497178567909751 0.794726694504568 NA NA prediction 0.589453389009136 Functional Gain - NUDT15 ENSG00000136159 CDS Human protein_coding chr13:48619848 chr13:48619847 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_14205 0 0 1 0 1 NUDT15 chr13:48619796 3'AG 48619796 Downstream 52bp 13649 chr17 7286329 7286329 1 + G T UCEC 7286330 + 7286310 7286350 41 TTTACTGGCCCATCCTTGAGGAGCTTAATGTCACTCGGCCA TTTACTGGCCCATCCTTGATGAGCTTAATGTCACTCGGCCA < 41bp 0.47445852319401 0.794722042982307 NA NA prediction 0.589444085964614 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7286330 chr17:7286329 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_14206 0 0 0 0 1 TNK1 chr17:7286408 5'GT 7286408 Upstream 80bp 13650 chr11 121060496 121060496 1 + G T UCEC 121060497 + 121060477 121060517 41 GGACTGGTGTGAGGACAATGGAGGGTGTGAGCAGATTTGCA GGACTGGTGTGAGGACAATTGAGGGTGTGAGCAGATTTGCA < 41bp 0.488280596891496 0.7947128678531 NA NA prediction 0.5894257357062 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121060497 chr11:121060496 stopgain 0.305 1 20 hm7G_associated_SNPs_14207 0 0 0 0 2 TECTA chr11:121060473 3'AG 121060473 Downstream 24bp 13651 chr11 121060496 121060496 1 + G T UCEC 121060497 + 121060477 121060517 41 GGACTGGTGTGAGGACAATGGAGGGTGTGAGCAGATTTGCA GGACTGGTGTGAGGACAATTGAGGGTGTGAGCAGATTTGCA < 41bp 0.488280596891496 0.7947128678531 NA NA prediction 0.5894257357062 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121060497 chr11:121060496 stopgain 0.305 1 20 hm7G_associated_SNPs_14207 0 0 0 0 2 TECTA chr11:121060589 5'GT 121060589 Upstream 94bp 13652 chr16 335692 335692 1 + G T SARC 335693 + 335673 335713 41 CTGCCATGCAGTCCTCAACGGCCAAGTCAAGGTCCGCTGCA CTGCCATGCAGTCCTCAACTGCCAAGTCAAGGTCCGCTGCA < 41bp 0.538828943765075 0.833540306078321 NA NA prediction 0.589422724626491 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335693 chr16:335692 nonsynonymous SNV 0.001 4 20 hm7G_associated_SNPs_14208 0 0 0 0 1 PDIA2 chr16:335703 5'GT 335703 Upstream 12bp 13653 chr1 237057847 237057847 1 + G T LUAD 237057848 + 237057828 237057868 41 GTCAAGGCGCTGGGGGACCGGCTGGCAGAGGTAAGGCAGAG GTCAAGGCGCTGGGGGACCTGCTGGCAGAGGTAAGGCAGAG < 41bp 0.485394659108901 0.794699465487256 NA NA prediction 0.589398930974511 Functional Gain - MTR ENSG00000116984 CDS Human protein_coding chr1:237057848 chr1:237057847 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14210 0 0 1 0 1 MTR chr1:237057857 5'GT 237057857 Upstream 11bp 13654 chr1 193107279 193107279 1 + G T GBM 193107280 + 193107260 193107300 41 TTGGAGGGTCACAAAGAAGGGATTGTACAGACTGAACAGAT TTGGAGGGTCACAAAGAAGTGATTGTACAGACTGAACAGAT < 41bp 0.496067189499362 0.794633448794628 NA NA prediction 0.589266897589256 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193107280 chr1:193107279 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_14215 0 0 1 0 2 CDC73 chr1:193107215 3'AG 193107215 Downstream 65bp 13655 chr1 193107279 193107279 1 + G T GBM 193107280 + 193107260 193107300 41 TTGGAGGGTCACAAAGAAGGGATTGTACAGACTGAACAGAT TTGGAGGGTCACAAAGAAGTGATTGTACAGACTGAACAGAT < 41bp 0.496067189499362 0.794633448794628 NA NA prediction 0.589266897589256 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193107280 chr1:193107279 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_14215 0 0 1 0 2 CDC73 chr1:193107303 5'GT 193107303 Upstream 25bp 13656 chr14 24905350 24905350 1 + G T GBM 24905351 + 24905331 24905371 41 AGTTCCGGGACCTGGCGGAGGAGTCTGAGAAGTGGATGGCA AGTTCCGGGACCTGGCGGATGAGTCTGAGAAGTGGATGGCA < 41bp 0.540617343618556 0.835249193438421 NA NA prediction 0.58926369963973 Functional Gain - KHNYN ENSG00000100441 CDS Human protein_coding chr14:24905351 chr14:24905350 nonsynonymous SNV 0.931 1 20 hm7G_associated_SNPs_14216 0 0 1 0 2 KHNYN chr14:24905278 3'AG 24905278 Downstream 73bp 13657 chr14 24905350 24905350 1 + G T GBM 24905351 + 24905331 24905371 41 AGTTCCGGGACCTGGCGGAGGAGTCTGAGAAGTGGATGGCA AGTTCCGGGACCTGGCGGATGAGTCTGAGAAGTGGATGGCA < 41bp 0.540617343618556 0.835249193438421 NA NA prediction 0.58926369963973 Functional Gain - KHNYN ENSG00000100441 CDS Human protein_coding chr14:24905351 chr14:24905350 nonsynonymous SNV 0.931 1 20 hm7G_associated_SNPs_14216 0 0 1 0 2 KHNYN chr14:24905385 5'GT 24905385 Upstream 36bp 13658 chr17 17948473 17948473 1 + G T LUAD 17948474 + 17948454 17948494 41 TTTTCAGCACGTGGACACGGGGAACTCTTACCTTTGTGGGT TTTTCAGCACGTGGACACGTGGAACTCTTACCTTTGTGGGT < 41bp 0.48081973293206 0.79462990089071 NA NA prediction 0.589259801781421 Functional Gain - GID4 ENSG00000141034 CDS Human protein_coding chr17:17948474 chr17:17948473 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_14217 0 0 1 0 2 GID4 chr17:17948461 3'AG 17948461 Downstream 13bp 13659 chr17 17948473 17948473 1 + G T LUAD 17948474 + 17948454 17948494 41 TTTTCAGCACGTGGACACGGGGAACTCTTACCTTTGTGGGT TTTTCAGCACGTGGACACGTGGAACTCTTACCTTTGTGGGT < 41bp 0.48081973293206 0.79462990089071 NA NA prediction 0.589259801781421 Functional Gain - GID4 ENSG00000141034 CDS Human protein_coding chr17:17948474 chr17:17948473 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_14217 0 0 1 0 2 GID4 chr17:17948520 5'GT 17948520 Upstream 48bp 13660 chr1 182787686 182787686 1 + G T LUSC 182787687 + 182787667 182787707 41 TTTGAGCAGTTCGTGCTGAGGAGTTGTTGGATGGGATTCTG TTTGAGCAGTTCGTGCTGATGAGTTGTTGGATGGGATTCTG < 41bp 0.512655387867775 0.807278658806145 NA NA prediction 0.589246541876741 Functional Gain - NPL ENSG00000135838 CDS Human protein_coding chr1:182787687 chr1:182787686 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14218 0 0 0 0 1 NPL chr1:182787676 3'AG 182787676 Downstream 11bp 13661 chr6 74171710 74171710 1 + G T CESC 74171711 + 74171691 74171731 41 CGTGATAGTCATTGGTGGAGGACATGCCGGGACTGAGGCAG CGTGATAGTCATTGGTGGATGACATGCCGGGACTGAGGCAG < 41bp 0.487931206412238 0.794612662435303 NA NA prediction 0.589225324870607 Functional Gain - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74171711 chr6:74171710 stopgain 0.858 1 20 hm7G_associated_SNPs_14220 0 0 1 0 1 MTO1 chr6:74171794 5'GT 74171794 Upstream 85bp 13662 chr12 107090210 107090210 1 + G T UCEC 107090211 + 107090191 107090231 41 TGATGCCCACTGTGCTGCAGGCATTACCTGACAGGTGGGCA TGATGCCCACTGTGCTGCATGCATTACCTGACAGGTGGGCA < 41bp 0.543475864372222 0.838085074580025 NA NA prediction 0.589218420415605 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107090211 chr12:107090210 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14221 0 0 0 0 1 RFX4 chr12:107090224 5'GT 107090224 Upstream 15bp 13663 chr4 156638394 156638394 1 + G T HNSC 156638395 + 156638375 156638415 41 CTGTTCAGATAGCGCTGATGGCCCTGAAGATGATGGAGCTC CTGTTCAGATAGCGCTGATTGCCCTGAAGATGATGGAGCTC < 41bp 0.484118010108567 0.794607513144018 NA NA prediction 0.589215026288036 Functional Gain - GUCY1A3 ENSG00000164116 CDS Human protein_coding chr4:156638395 chr4:156638394 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14223 0 0 1 0 2 GUCY1A3 chr4:156638311 3'AG 156638311 Downstream 84bp 13664 chr4 156638394 156638394 1 + G T HNSC 156638395 + 156638375 156638415 41 CTGTTCAGATAGCGCTGATGGCCCTGAAGATGATGGAGCTC CTGTTCAGATAGCGCTGATTGCCCTGAAGATGATGGAGCTC < 41bp 0.484118010108567 0.794607513144018 NA NA prediction 0.589215026288036 Functional Gain - GUCY1A3 ENSG00000164116 CDS Human protein_coding chr4:156638395 chr4:156638394 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14223 0 0 1 0 2 GUCY1A3 chr4:156638454 5'GT 156638454 Upstream 61bp 13665 chr17 39977265 39977265 1 + G T STAD 39977266 + 39977246 39977286 41 TGATCGAAGGCCTGGACACGGGCCTGCAGGGCATGTGTGTG TGATCGAAGGCCTGGACACTGGCCTGCAGGGCATGTGTGTG < 41bp 0.547383492362102 0.841989497416426 NA NA prediction 0.589212010108646 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39977266 chr17:39977265 synonymous SNV . 0 20 hm7G_associated_SNPs_14224 0 0 1 0 2 FKBP10 chr17:39977199 3'AG 39977199 Downstream 67bp 13666 chr17 39977265 39977265 1 + G T STAD 39977266 + 39977246 39977286 41 TGATCGAAGGCCTGGACACGGGCCTGCAGGGCATGTGTGTG TGATCGAAGGCCTGGACACTGGCCTGCAGGGCATGTGTGTG < 41bp 0.547383492362102 0.841989497416426 NA NA prediction 0.589212010108646 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39977266 chr17:39977265 synonymous SNV . 0 20 hm7G_associated_SNPs_14224 0 0 1 0 2 FKBP10 chr17:39977341 5'GT 39977341 Upstream 77bp 13667 chr3 154832854 154832854 1 + G T COAD 154832855 + 154832835 154832875 41 TTTCAAATATGCTTGCGGAGGCTGGTTGAAACGTAATGTCA TTTCAAATATGCTTGCGGATGCTGGTTGAAACGTAATGTCA < 41bp 0.526209633956835 0.820812857256337 NA NA prediction 0.589206446599003 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154832855 chr3:154832854 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14225 0 0 1 0 2 MME chr3:154832783 3'AG 154832783 Downstream 72bp 13668 chr3 154832854 154832854 1 + G T COAD 154832855 + 154832835 154832875 41 TTTCAAATATGCTTGCGGAGGCTGGTTGAAACGTAATGTCA TTTCAAATATGCTTGCGGATGCTGGTTGAAACGTAATGTCA < 41bp 0.526209633956835 0.820812857256337 NA NA prediction 0.589206446599003 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154832855 chr3:154832854 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14225 0 0 1 0 2 MME chr3:154832944 5'GT 154832944 Upstream 91bp 13669 chr7 23794028 23794028 1 + G T OV 23794029 + 23794009 23794049 41 TACTCCAGCTTCTTTGAATGGATTAGAGATAATATGGGCAG TACTCCAGCTTCTTTGAATTGATTAGAGATAATATGGGCAG < 41bp 0.490912442537756 0.794600191816161 NA NA prediction 0.589200383632322 Functional Gain - STK31 ENSG00000196335 CDS Human protein_coding chr7:23794029 chr7:23794028 stopgain 0.921 0 20 hm7G_associated_SNPs_14226 0 0 1 0 2 STK31 chr7:23793934 3'AG 23793934 Downstream 95bp 13670 chr7 23794028 23794028 1 + G T OV 23794029 + 23794009 23794049 41 TACTCCAGCTTCTTTGAATGGATTAGAGATAATATGGGCAG TACTCCAGCTTCTTTGAATTGATTAGAGATAATATGGGCAG < 41bp 0.490912442537756 0.794600191816161 NA NA prediction 0.589200383632322 Functional Gain - STK31 ENSG00000196335 CDS Human protein_coding chr7:23794029 chr7:23794028 stopgain 0.921 0 20 hm7G_associated_SNPs_14226 0 0 1 0 2 STK31 chr7:23794093 5'GT 23794093 Upstream 66bp 13671 chr8 21859710 21859710 1 + G T THYM 21859711 + 21859691 21859731 41 TCACGTAGCACCAAGAAGAGGACCACACCCCTGAACCAGGA TCACGTAGCACCAAGAAGATGACCACACCCCTGAACCAGGA < 41bp 0.531875634865056 0.826472545228817 NA NA prediction 0.589193820727522 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859711 chr8:21859710 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_14227 0 0 1 0 2 XPO7 chr8:21859623 3'AG 21859623 Downstream 88bp 13672 chr8 21859710 21859710 1 + G T THYM 21859711 + 21859691 21859731 41 TCACGTAGCACCAAGAAGAGGACCACACCCCTGAACCAGGA TCACGTAGCACCAAGAAGATGACCACACCCCTGAACCAGGA < 41bp 0.531875634865056 0.826472545228817 NA NA prediction 0.589193820727522 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21859711 chr8:21859710 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_14227 0 0 1 0 2 XPO7 chr8:21859783 5'GT 21859783 Upstream 74bp 13673 chrX 153001804 153001804 1 + G T LUAD 153001805 + 153001785 153001825 41 TCACCCTCCCTCAGGTGACGGAGCTGGCTGGCTACACAGCC TCACCCTCCCTCAGGTGACTGAGCTGGCTGGCTACACAGCC < 41bp 0.529679687360623 0.824265807622027 NA NA prediction 0.589172240522809 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153001805 chrX:153001804 synonymous SNV . 0 20 hm7G_associated_SNPs_14228 0 0 1 0 1 ABCD1 chrX:153001799 3'AG 153001799 Downstream 6bp 13674 chr12 106708187 106708187 1 + G T GBM 106708188 + 106708168 106708208 41 GAAGTGATGGCTACAGCAAGGAACTTATCAAACTTGACTCT GAAGTGATGGCTACAGCAATGAACTTATCAAACTTGACTCT < 41bp 0.497803619590646 0.794582392510232 NA NA prediction 0.589164785020465 Functional Gain - TCP11L2 ENSG00000166046 CDS Human protein_coding chr12:106708188 chr12:106708187 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14229 0 0 1 0 2 TCP11L2 chr12:106708136 3'AG 106708136 Downstream 52bp 13675 chr12 106708187 106708187 1 + G T GBM 106708188 + 106708168 106708208 41 GAAGTGATGGCTACAGCAAGGAACTTATCAAACTTGACTCT GAAGTGATGGCTACAGCAATGAACTTATCAAACTTGACTCT < 41bp 0.497803619590646 0.794582392510232 NA NA prediction 0.589164785020465 Functional Gain - TCP11L2 ENSG00000166046 CDS Human protein_coding chr12:106708188 chr12:106708187 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14229 0 0 1 0 2 TCP11L2 chr12:106708271 5'GT 106708271 Upstream 85bp 13676 chr15 65847245 65847245 1 + G T UCEC 65847246 + 65847226 65847266 41 TCAAGGACATGGTGCCAAAGGAGACAATGTCTATGAATTTC TCAAGGACATGGTGCCAAATGAGACAATGTCTATGAATTTC < 41bp 0.522728820423268 0.81730772693607 NA NA prediction 0.589157813025604 Functional Gain - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65847246 chr15:65847245 stopgain 1.000 1 20 hm7G_associated_SNPs_14230 0 0 1 4 2 HACD3 chr15:65847225 3'AG 65847225 Downstream 21bp 13677 chr15 65847245 65847245 1 + G T UCEC 65847246 + 65847226 65847266 41 TCAAGGACATGGTGCCAAAGGAGACAATGTCTATGAATTTC TCAAGGACATGGTGCCAAATGAGACAATGTCTATGAATTTC < 41bp 0.522728820423268 0.81730772693607 NA NA prediction 0.589157813025604 Functional Gain - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65847246 chr15:65847245 stopgain 1.000 1 20 hm7G_associated_SNPs_14230 0 0 1 4 2 HACD3 chr15:65847298 5'GT 65847298 Upstream 54bp 13678 chr2 88474778 88474778 1 + G T rs75522866 88474779 + 88474759 88474799 41 CCCATCCAGGAACATCTGGGGACACAGGAAGTGCTGCCATT CCCATCCAGGAACATCTGGTGACACAGGAAGTGCTGCCATT < 41bp 0.478312755832709 0.794560258715411 NA NA prediction 0.589120517430822 Functional Gain - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88474779 chr2:88474778 synonymous SNV . 0 20 hm7G_associated_SNPs_14232 0 0 0 2 1 THNSL2 chr2:88474768 3'AG 88474768 Downstream 11bp 13679 chr10 71020967 71020967 1 + G T LIHC 71020968 + 71020948 71020988 41 TGATCGACCTGACCAAGCAGGGTCTCCTCTTCCGAGGGCAG TGATCGACCTGACCAAGCATGGTCTCCTCTTCCGAGGGCAG < 41bp 0.463202368489557 0.794553823974896 NA NA prediction 0.589107647949791 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71020968 chr10:71020967 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_14233 0 0 0 1 2 HKDC1 chr10:71020895 3'AG 71020895 Downstream 73bp 13680 chr10 71020967 71020967 1 + G T LIHC 71020968 + 71020948 71020988 41 TGATCGACCTGACCAAGCAGGGTCTCCTCTTCCGAGGGCAG TGATCGACCTGACCAAGCATGGTCTCCTCTTCCGAGGGCAG < 41bp 0.463202368489557 0.794553823974896 NA NA prediction 0.589107647949791 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71020968 chr10:71020967 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_14233 0 0 0 1 2 HKDC1 chr10:71021050 5'GT 71021050 Upstream 84bp 13681 chr9 131271368 131271368 1 + G T LUAD 131271369 + 131271349 131271389 41 CTCCCCTGCAACACCAAATGGAACCAAGGTAAGGTTGTGAT CTCCCCTGCAACACCAAATTGAACCAAGGTAAGGTTGTGAT < 41bp 0.484282170174091 0.794547806009337 NA NA prediction 0.589095612018675 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131271369 chr9:131271368 stopgain 0.938 0 20 hm7G_associated_SNPs_14234 0 0 0 0 1 GLE1 chr9:131271376 5'GT 131271376 Upstream 9bp 13682 chr2 33036187 33036187 1 + G T LUSC 33036188 + 33036168 33036208 41 AAAGCTGCAGGAGTTATTTGGCAGAGTGACTTCAAGAGTGA AAAGCTGCAGGAGTTATTTTGCAGAGTGACTTCAAGAGTGA < 41bp 0.478082631869536 0.794502486804683 NA NA prediction 0.589004973609367 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33036188 chr2:33036187 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14238 0 0 1 1 1 TTC27 chr2:33036091 3'AG 33036091 Downstream 97bp 13683 chr4 5800495 5800495 1 + G T LUAD 5800496 + 5800476 5800516 41 ATGCAGCCACCAAGAGCCGGGCCAAGGACAGGGATGACTTC ATGCAGCCACCAAGAGCCGTGCCAAGGACAGGGATGACTTC < 41bp 0.464373160509541 0.794497433795841 NA NA prediction 0.588994867591682 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5800496 chr4:5800495 synonymous SNV . 0 20 hm7G_associated_SNPs_14239 0 0 1 0 1 EVC chr4:5800519 5'GT 5800519 Upstream 25bp 13684 chr11 6291508 6291508 1 + G T LUSC 6291509 + 6291489 6291529 41 ACACTGTCGTGCAACCAGTGGGGCCTCGTGTGCTGCAGTGC ACACTGTCGTGCAACCAGTTGGGCCTCGTGTGCTGCAGTGC < 41bp 0.456806068256776 0.794470114643833 NA NA prediction 0.588940229287666 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291509 chr11:6291508 synonymous SNV . 0 20 hm7G_associated_SNPs_14241 0 0 0 0 1 CCKBR chr11:6291567 5'GT 6291567 Upstream 60bp 13685 chr16 21728344 21728344 1 + G T UCEC 21728345 + 21728325 21728365 41 TCAACTCTACAGTCCTGAAGGATAAGGAACTTGGAAGGAGC TCAACTCTACAGTCCTGAATGATAAGGAACTTGGAAGGAGC < 41bp 0.532940360698758 0.82740715128413 NA NA prediction 0.588933581170745 Functional Gain - OTOA ENSG00000155719 CDS Human protein_coding chr16:21728345 chr16:21728344 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_14243 0 0 0 0 1 OTOA chr16:21728368 5'GT 21728368 Upstream 25bp 13686 chr1 158262570 158262570 1 + G T LUSC 158262571 + 158262551 158262591 41 ATGGGACATGGTATCTTCAGGTGATCCTGGAGGTGGCATCT ATGGGACATGGTATCTTCATGTGATCCTGGAGGTGGCATCT < 41bp 0.497893976292004 0.794435231309941 NA NA prediction 0.588870462619882 Functional Gain - CD1C ENSG00000158481 CDS Human protein_coding chr1:158262571 chr1:158262570 nonsynonymous SNV 0.039 1 20 hm7G_associated_SNPs_14245 0 0 0 0 1 CD1C chr1:158262664 5'GT 158262664 Upstream 95bp 13687 chr15 83781565 83781565 1 + G T UCEC 83781566 + 83781546 83781586 41 CAGTTCCTGGACTATTGTAGGGGTTGCTGCCCTCATCCTGT CAGTTCCTGGACTATTGTATGGGTTGCTGCCCTCATCCTGT < 41bp 0.528762861937289 0.82319737468816 NA NA prediction 0.588869025501741 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781566 chr15:83781565 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_14246 0 0 0 0 2 TM6SF1 chr15:83781549 3'AG 83781549 Downstream 17bp 13688 chr15 83781565 83781565 1 + G T UCEC 83781566 + 83781546 83781586 41 CAGTTCCTGGACTATTGTAGGGGTTGCTGCCCTCATCCTGT CAGTTCCTGGACTATTGTATGGGTTGCTGCCCTCATCCTGT < 41bp 0.528762861937289 0.82319737468816 NA NA prediction 0.588869025501741 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83781566 chr15:83781565 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_14246 0 0 0 0 2 TM6SF1 chr15:83781652 5'GT 83781652 Upstream 88bp 13689 chr9 134314436 134314436 1 + G T UCEC 134314437 + 134314417 134314457 41 GCTGAATGGAAAGCCAGTAGGACACGAAGGTGGTAAGTGCG GCTGAATGGAAAGCCAGTATGACACGAAGGTGGTAAGTGCG < 41bp 0.475875649143247 0.794400170583167 NA NA prediction 0.588800341166335 Functional Gain - PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134314437 chr9:134314436 stopgain 0.999 0 20 hm7G_associated_SNPs_14247 0 0 1 0 2 PRRC2B chr9:134314376 3'AG 134314376 Downstream 61bp 13690 chr9 134314436 134314436 1 + G T UCEC 134314437 + 134314417 134314457 41 GCTGAATGGAAAGCCAGTAGGACACGAAGGTGGTAAGTGCG GCTGAATGGAAAGCCAGTATGACACGAAGGTGGTAAGTGCG < 41bp 0.475875649143247 0.794400170583167 NA NA prediction 0.588800341166335 Functional Gain - PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134314437 chr9:134314436 stopgain 0.999 0 20 hm7G_associated_SNPs_14247 0 0 1 0 2 PRRC2B chr9:134314448 5'GT 134314448 Upstream 13bp 13691 chr5 40979868 40979868 1 + G T UCEC 40979869 + 40979849 40979889 41 CAAGATGAGAGAAGCAAAAGGATACTGCCTCTGACAGTTTG CAAGATGAGAGAAGCAAAATGATACTGCCTCTGACAGTTTG < 41bp 0.492127100923765 0.794396009180609 NA NA prediction 0.588792018361218 Functional Gain - C7 ENSG00000112936 CDS Human protein_coding chr5:40979869 chr5:40979868 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_14248 0 0 0 0 1 C7 chr5:40979827 3'AG 40979827 Downstream 42bp 13692 chr7 141333744 141333744 1 + G T UCEC 141333745 + 141333725 141333765 41 GCAATGACCGGCCTTCGATGGGGATCTTTCAGAGATGCTGG GCAATGACCGGCCTTCGATTGGGATCTTTCAGAGATGCTGG < 41bp 0.467921972842742 0.794394267342259 NA NA prediction 0.588788534684519 Functional Gain - AGK ENSG00000006530 CDS Human protein_coding chr7:141333745 chr7:141333744 nonsynonymous SNV 0.863 2 20 hm7G_associated_SNPs_14249 0 0 1 0 1 AGK chr7:141333780 5'GT 141333780 Upstream 37bp 13693 chr12 7286246 7286246 1 + G T LUSC 7286247 + 7286227 7286267 41 TGACAAGGCGACAGGAGAGGGGCTGATCCGGGCCAAGGAGC TGACAAGGCGACAGGAGAGTGGCTGATCCGGGCCAAGGAGC < 41bp 0.455584676814035 0.794392608720997 NA NA prediction 0.588785217441993 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7286247 chr12:7286246 nonsynonymous SNV 0.963 5 20 hm7G_associated_SNPs_14250 0 0 1 0 1 CLSTN3 chr12:7286169 3'AG 7286169 Downstream 78bp 13694 chr2 27560148 27560148 1 - C A UCEC 27560147 - 27560127 27560167 41 GTTTTCTGTACAACGTGAAGGGCTACCTGAAGATGGCACCC GTTTTCTGTACAACGTGAATGGCTACCTGAAGATGGCACCC < 41bp 0.550454745404344 0.844825783536979 NA NA prediction 0.588742076265271 Functional Gain - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27560147 chr2:27560148 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_14252 0 0 1 0 2 GTF3C2 chr2:27560111 5'GT 27560111 Upstream 38bp 13695 chr2 27560148 27560148 1 - C A UCEC 27560147 - 27560127 27560167 41 GTTTTCTGTACAACGTGAAGGGCTACCTGAAGATGGCACCC GTTTTCTGTACAACGTGAATGGCTACCTGAAGATGGCACCC < 41bp 0.550454745404344 0.844825783536979 NA NA prediction 0.588742076265271 Functional Gain - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27560147 chr2:27560148 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_14252 0 0 1 0 2 GTF3C2 chr2:27560209 3'AG 27560209 Downstream 62bp 13696 chr5 5447604 5447604 1 + G T UCEC 5447605 + 5447585 5447625 41 AAAAGAAAATACTTGAAAAGGAATTTAAGAAGACACAGGTA AAAAGAAAATACTTGAAAATGAATTTAAGAAGACACAGGTA < 41bp 0.509438262642793 0.80379766923943 NA NA prediction 0.588718813193273 Functional Gain - ICE1 ENSG00000164151 CDS Human protein_coding chr5:5447605 chr5:5447604 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14253 0 0 1 0 2 ICE1 chr5:5447540 3'AG 5447540 Downstream 65bp 13697 chr5 5447604 5447604 1 + G T UCEC 5447605 + 5447585 5447625 41 AAAAGAAAATACTTGAAAAGGAATTTAAGAAGACACAGGTA AAAAGAAAATACTTGAAAATGAATTTAAGAAGACACAGGTA < 41bp 0.509438262642793 0.80379766923943 NA NA prediction 0.588718813193273 Functional Gain - ICE1 ENSG00000164151 CDS Human protein_coding chr5:5447605 chr5:5447604 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14253 0 0 1 0 2 ICE1 chr5:5447622 5'GT 5447622 Upstream 19bp 13698 chr22 49103579 49103579 1 + G T ESCA 49103580 + 49103560 49103600 41 CATGCTTCCGTGTCTGGAGGGGGAAGGCTGCGACTTGTTAA CATGCTTCCGTGTCTGGAGTGGGAAGGCTGCGACTTGTTAA < 41bp 0.535421897531997 0.829776058684622 NA NA prediction 0.588708322305249 Functional Gain - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49103580 chr22:49103579 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14254 0 0 1 0 2 FAM19A5 chr22:49103529 3'AG 49103529 Downstream 51bp 13699 chr22 49103579 49103579 1 + G T ESCA 49103580 + 49103560 49103600 41 CATGCTTCCGTGTCTGGAGGGGGAAGGCTGCGACTTGTTAA CATGCTTCCGTGTCTGGAGTGGGAAGGCTGCGACTTGTTAA < 41bp 0.535421897531997 0.829776058684622 NA NA prediction 0.588708322305249 Functional Gain - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49103580 chr22:49103579 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14254 0 0 1 0 2 FAM19A5 chr22:49103656 5'GT 49103656 Upstream 78bp 13700 chr1 206610339 206610339 1 + G T HNSC 206610340 + 206610320 206610360 41 CAGCATGAAGGAATTTTCCGGGTGTCAGGATCCCAGGTGGA CAGCATGAAGGAATTTTCCTGGTGTCAGGATCCCAGGTGGA < 41bp 0.541788896270287 0.83614134197752 NA NA prediction 0.588704891414466 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206610340 chr1:206610339 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_14255 0 0 1 0 2 SRGAP2 chr1:206610315 3'AG 206610315 Downstream 25bp 13701 chr1 206610339 206610339 1 + G T HNSC 206610340 + 206610320 206610360 41 CAGCATGAAGGAATTTTCCGGGTGTCAGGATCCCAGGTGGA CAGCATGAAGGAATTTTCCTGGTGTCAGGATCCCAGGTGGA < 41bp 0.541788896270287 0.83614134197752 NA NA prediction 0.588704891414466 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206610340 chr1:206610339 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_14255 0 0 1 0 2 SRGAP2 chr1:206610392 5'GT 206610392 Upstream 54bp 13702 chr15 23000152 23000152 1 + G T CHOL 23000153 + 23000133 23000173 41 ATGATCATCGTACTTCTTGGGCAGCAGCGGCGTTTTGCTGT ATGATCATCGTACTTCTTGTGCAGCAGCGGCGTTTTGCTGT < 41bp 0.480508354493068 0.794343079009999 NA NA prediction 0.588686158019997 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:23000153 chr15:23000152 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_14256 0 0 0 0 2 CYFIP1 chr15:23000096 3'AG 23000096 Downstream 57bp 13703 chr15 23000152 23000152 1 + G T CHOL 23000153 + 23000133 23000173 41 ATGATCATCGTACTTCTTGGGCAGCAGCGGCGTTTTGCTGT ATGATCATCGTACTTCTTGTGCAGCAGCGGCGTTTTGCTGT < 41bp 0.480508354493068 0.794343079009999 NA NA prediction 0.588686158019997 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:23000153 chr15:23000152 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_14256 0 0 0 0 2 CYFIP1 chr15:23000243 5'GT 23000243 Upstream 92bp 13704 chr20 39802814 39802814 1 + G T rs33917926 39802815 + 39802795 39802835 41 GTACGTCCCTGCGGGAGCGGGGCTCAGATGCCTCAGGCCAG GTACGTCCCTGCGGGAGCGTGGCTCAGATGCCTCAGGCCAG < 41bp 0.467856436302324 0.794338396579782 NA NA prediction 0.588676793159564 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39802815 chr20:39802814 synonymous SNV . 0 20 hm7G_associated_SNPs_14257 0 0 1 0 2 PLCG1 chr20:39802764 3'AG 39802764 Downstream 51bp 13705 chr20 39802814 39802814 1 + G T rs33917926 39802815 + 39802795 39802835 41 GTACGTCCCTGCGGGAGCGGGGCTCAGATGCCTCAGGCCAG GTACGTCCCTGCGGGAGCGTGGCTCAGATGCCTCAGGCCAG < 41bp 0.467856436302324 0.794338396579782 NA NA prediction 0.588676793159564 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39802815 chr20:39802814 synonymous SNV . 0 20 hm7G_associated_SNPs_14257 0 0 1 0 2 PLCG1 chr20:39802767 3'AG 39802767 Downstream 48bp 13706 chr14 91633663 91633663 1 + G T LUSC 91633664 + 91633644 91633684 41 CTGGTCCTCTACCCCTGCTGGGCCAGAGTGAGCCAGAAAAG CTGGTCCTCTACCCCTGCTTGGCCAGAGTGAGCCAGAAAAG < 41bp 0.473481650634897 0.794318678231668 NA NA prediction 0.588637356463337 Functional Gain - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91633664 chr14:91633663 synonymous SNV . 0 20 hm7G_associated_SNPs_14259 0 0 1 1 2 C14orf159 chr14:91633569 3'AG 91633569 Downstream 95bp 13707 chr14 91633663 91633663 1 + G T LUSC 91633664 + 91633644 91633684 41 CTGGTCCTCTACCCCTGCTGGGCCAGAGTGAGCCAGAAAAG CTGGTCCTCTACCCCTGCTTGGCCAGAGTGAGCCAGAAAAG < 41bp 0.473481650634897 0.794318678231668 NA NA prediction 0.588637356463337 Functional Gain - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91633664 chr14:91633663 synonymous SNV . 0 20 hm7G_associated_SNPs_14259 0 0 1 1 2 C14orf159 chr14:91633722 5'GT 91633722 Upstream 60bp 13708 chr1 196642190 196642190 1 + G T READ 196642191 + 196642171 196642211 41 CATATCCAGAAGGCACCCAGGCTATCTATAAATGCCGCCCT CATATCCAGAAGGCACCCATGCTATCTATAAATGCCGCCCT < 41bp 0.542536054960615 0.836852085539349 NA NA prediction 0.588632061157468 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196642191 chr1:196642190 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_14260 0 0 1 0 1 CFH chr1:196642108 3'AG 196642108 Downstream 83bp 13709 chr17 75187337 75187337 1 + G T BLCA 75187338 + 75187318 75187358 41 AACGTACTTTGCACATTGAGGCTTATAATGAAACGTTTTCC AACGTACTTTGCACATTGATGCTTATAATGAAACGTTTTCC < 41bp 0.483976660684233 0.794311647843035 NA NA prediction 0.58862329568607 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75187338 chr17:75187337 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_14261 0 0 0 0 2 SEC14L1 chr17:75187263 3'AG 75187263 Downstream 75bp 13710 chr17 75187337 75187337 1 + G T BLCA 75187338 + 75187318 75187358 41 AACGTACTTTGCACATTGAGGCTTATAATGAAACGTTTTCC AACGTACTTTGCACATTGATGCTTATAATGAAACGTTTTCC < 41bp 0.483976660684233 0.794311647843035 NA NA prediction 0.58862329568607 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75187338 chr17:75187337 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_14261 0 0 0 0 2 SEC14L1 chr17:75187394 5'GT 75187394 Upstream 58bp 13711 chr6 52288786 52288786 1 + G T LUAD 52288787 + 52288767 52288807 41 GACGCTGAGCTACAGGAACGGCTATGCAATTGTTCGACGTC GACGCTGAGCTACAGGAACTGCTATGCAATTGTTCGACGTC < 41bp 0.538965915173754 0.833275966048601 NA NA prediction 0.588620101749695 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288787 chr6:52288786 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14262 0 0 1 0 2 EFHC1 chr6:52288744 3'AG 52288744 Downstream 43bp 13712 chr6 52288786 52288786 1 + G T LUAD 52288787 + 52288767 52288807 41 GACGCTGAGCTACAGGAACGGCTATGCAATTGTTCGACGTC GACGCTGAGCTACAGGAACTGCTATGCAATTGTTCGACGTC < 41bp 0.538965915173754 0.833275966048601 NA NA prediction 0.588620101749695 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52288787 chr6:52288786 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14262 0 0 1 0 2 EFHC1 chr6:52288879 5'GT 52288879 Upstream 94bp 13713 chr14 81574771 81574771 1 + G T GBM 81574772 + 81574752 81574792 41 TGACAAAGATGCATTTGGAGGAGTATACAGTGGACCAAGCT TGACAAAGATGCATTTGGATGAGTATACAGTGGACCAAGCT < 41bp 0.50994778492861 0.804256469072983 NA NA prediction 0.588617368288745 Functional Gain - TSHR ENSG00000165409 CDS Human protein_coding chr14:81574772 chr14:81574771 stopgain 1.000 1 20 hm7G_associated_SNPs_14263 0 0 0 0 2 TSHR chr14:81574719 3'AG 81574719 Downstream 53bp 13714 chr14 81574771 81574771 1 + G T GBM 81574772 + 81574752 81574792 41 TGACAAAGATGCATTTGGAGGAGTATACAGTGGACCAAGCT TGACAAAGATGCATTTGGATGAGTATACAGTGGACCAAGCT < 41bp 0.50994778492861 0.804256469072983 NA NA prediction 0.588617368288745 Functional Gain - TSHR ENSG00000165409 CDS Human protein_coding chr14:81574772 chr14:81574771 stopgain 1.000 1 20 hm7G_associated_SNPs_14263 0 0 0 0 2 TSHR chr14:81574796 5'GT 81574796 Upstream 26bp 13715 chr2 26652585 26652585 1 + G T COAD 26652586 + 26652566 26652606 41 TGGAGCGGATGGAAGAACAGGTGAAGAATGTGATGAAAACC TGGAGCGGATGGAAGAACATGTGAAGAATGTGATGAAAACC < 41bp 0.509602613382822 0.803907662509978 NA NA prediction 0.588610098254312 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26652586 chr2:26652585 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_14264 0 0 0 3 2 DRC1 chr2:26652496 3'AG 26652496 Downstream 90bp 13716 chr2 26652585 26652585 1 + G T COAD 26652586 + 26652566 26652606 41 TGGAGCGGATGGAAGAACAGGTGAAGAATGTGATGAAAACC TGGAGCGGATGGAAGAACATGTGAAGAATGTGATGAAAACC < 41bp 0.509602613382822 0.803907662509978 NA NA prediction 0.588610098254312 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26652586 chr2:26652585 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_14264 0 0 0 3 2 DRC1 chr2:26652633 5'GT 26652633 Upstream 49bp 13717 chr20 61870819 61870819 1 + G T LUAD 61870820 + 61870800 61870840 41 AGGAGGAGAGGACGTGCAAGGTGTGCCTGGACCGCGCCGTG AGGAGGAGAGGACGTGCAATGTGTGCCTGGACCGCGCCGTG < 41bp 0.53833692391914 0.83263519606399 NA NA prediction 0.5885965442897 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61870820 chr20:61870819 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_14265 0 0 0 0 1 BIRC7 chr20:61870764 3'AG 61870764 Downstream 56bp 13718 chr11 45204498 45204498 1 + G T LUAD 45204499 + 45204479 45204519 41 TGACACACCGGTGCCCGTGGGCATCCCAGACCGGGCGGCGC TGACACACCGGTGCCCGTGTGCATCCCAGACCGGGCGGCGC < 41bp 0.467511705430195 0.794284940291028 NA NA prediction 0.588569880582057 Functional Gain - PRDM11 ENSG00000019485 CDS Human protein_coding chr11:45204499 chr11:45204498 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14266 0 0 0 0 1 PRDM11 chr11:45204412 3'AG 45204412 Downstream 87bp 13719 chr17 7416402 7416402 1 + G T SKCM 7416403 + 7416383 7416423 41 CGAGCCCCGCTCTCCTGGGGGCTACACACCCCAGAGTCCCT CGAGCCCCGCTCTCCTGGGTGCTACACACCCCAGAGTCCCT < 41bp 0.490199972168556 0.794272279828236 NA NA prediction 0.588544559656473 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7416403 chr17:7416402 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_14267 0 0 1 0 1 POLR2A chr17:7416340 3'AG 7416340 Downstream 63bp 13720 chr20 10541421 10541421 1 + G T UCEC 10541422 + 10541402 10541442 41 GAAGTTCGCAAACAGCACAGGCCATCAAATGCAGAATTCAC GAAGTTCGCAAACAGCACATGCCATCAAATGCAGAATTCAC < 41bp 0.531415968508104 0.82567720101792 NA NA prediction 0.588522465019631 Functional Gain - SLX4IP ENSG00000149346 CDS Human protein_coding chr20:10541422 chr20:10541421 nonsynonymous SNV 0.231 2 20 hm7G_associated_SNPs_14270 0 0 0 0 2 SLX4IP chr20:10541348 3'AG 10541348 Downstream 74bp 13721 chr20 10541421 10541421 1 + G T UCEC 10541422 + 10541402 10541442 41 GAAGTTCGCAAACAGCACAGGCCATCAAATGCAGAATTCAC GAAGTTCGCAAACAGCACATGCCATCAAATGCAGAATTCAC < 41bp 0.531415968508104 0.82567720101792 NA NA prediction 0.588522465019631 Functional Gain - SLX4IP ENSG00000149346 CDS Human protein_coding chr20:10541422 chr20:10541421 nonsynonymous SNV 0.231 2 20 hm7G_associated_SNPs_14270 0 0 0 0 2 SLX4IP chr20:10541468 5'GT 10541468 Upstream 48bp 13722 chr2 207436495 207436495 1 + G T LIHC 207436496 + 207436476 207436516 41 AATGTTCCCTCTCCAACGGGGCTCACTGCAGCGACGGGCCC AATGTTCCCTCTCCAACGGTGCTCACTGCAGCGACGGGCCC < 41bp 0.547851070843816 0.842106106462512 NA NA prediction 0.588510071237393 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207436496 chr2:207436495 synonymous SNV . 0 20 hm7G_associated_SNPs_14271 0 0 1 0 2 ADAM23 chr2:207436451 3'AG 207436451 Downstream 45bp 13723 chr2 207436495 207436495 1 + G T LIHC 207436496 + 207436476 207436516 41 AATGTTCCCTCTCCAACGGGGCTCACTGCAGCGACGGGCCC AATGTTCCCTCTCCAACGGTGCTCACTGCAGCGACGGGCCC < 41bp 0.547851070843816 0.842106106462512 NA NA prediction 0.588510071237393 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207436496 chr2:207436495 synonymous SNV . 0 20 hm7G_associated_SNPs_14271 0 0 1 0 2 ADAM23 chr2:207436540 5'GT 207436540 Upstream 46bp 13724 chr7 141414136 141414136 1 - C A COAD 141414135 - 141414115 141414155 41 ATAGGACTCTGGAGTGAAGGGATTAATATTGACCAGAGCCA ATAGGACTCTGGAGTGAAGTGATTAATATTGACCAGAGCCA < 41bp 0.525425443088849 0.81966782239626 NA NA prediction 0.588484758614823 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141414135 chr7:141414136 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_14273 0 0 0 0 1 WEE2 chr7:141414174 3'AG 141414174 Downstream 39bp 13725 chr18 77489060 77489060 1 + G T LUAD 77489061 + 77489041 77489081 41 AGGAGGATTTAGAGAGTATGGACAAAGAGGTGAGCCAACCC AGGAGGATTTAGAGAGTATTGACAAAGAGGTGAGCCAACCC < 41bp 0.543227830189285 0.837462960236196 NA NA prediction 0.588470260093823 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77489061 chr18:77489060 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14274 0 0 1 0 1 CTDP1 chr18:77489069 5'GT 77489069 Upstream 10bp 13726 chr5 78919109 78919109 1 + G T LIHC 78919110 + 78919090 78919130 41 AAAAAACCTTCCTCTTGACGGTAAACGGCAACGTTTCCATT AAAAAACCTTCCTCTTGACTGTAAACGGCAACGTTTCCATT < 41bp 0.513310701775015 0.80754456982844 NA NA prediction 0.58846773610685 Functional Gain - PAPD4 ENSG00000164329 CDS Human protein_coding chr5:78919110 chr5:78919109 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_14275 0 0 1 0 1 PAPD4 chr5:78919075 3'AG 78919075 Downstream 35bp 13727 chr7 37988591 37988591 1 + G T LUSC 37988592 + 37988572 37988612 41 GAAGACCAGTACTCCATCGGGGGGCCTCAGGAGCAGATCAC GAAGACCAGTACTCCATCGTGGGGCCTCAGGAGCAGATCAC < 41bp 0.47312324347028 0.794227645629317 NA NA prediction 0.588455291258634 Functional Gain - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37988592 chr7:37988591 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_14276 0 0 1 0 1 EPDR1 chr7:37988650 5'GT 37988650 Upstream 60bp 13728 chr3 32757741 32757741 1 + G T UCEC 32757742 + 32757722 32757762 41 TAATAACAACAACAAAGATGGATCTAATCATAAAGCTGAAA TAATAACAACAACAAAGATTGATCTAATCATAAAGCTGAAA < 41bp 0.483463333343693 0.794213772905444 NA NA prediction 0.588427545810889 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32757742 chr3:32757741 stopgain 0.997 0 20 hm7G_associated_SNPs_14277 0 0 1 0 2 CNOT10 chr3:32757717 3'AG 32757717 Downstream 25bp 13729 chr3 32757741 32757741 1 + G T UCEC 32757742 + 32757722 32757762 41 TAATAACAACAACAAAGATGGATCTAATCATAAAGCTGAAA TAATAACAACAACAAAGATTGATCTAATCATAAAGCTGAAA < 41bp 0.483463333343693 0.794213772905444 NA NA prediction 0.588427545810889 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32757742 chr3:32757741 stopgain 0.997 0 20 hm7G_associated_SNPs_14277 0 0 1 0 2 CNOT10 chr3:32757803 5'GT 32757803 Upstream 63bp 13730 chr12 25243014 25243014 1 + G T HNSC 25243015 + 25242995 25243035 41 AATTTCTCAGATTATCTTTGGGATTTAAGTGTGACTGGTTT AATTTCTCAGATTATCTTTTGGATTTAAGTGTGACTGGTTT < 41bp 0.507474998609216 0.801681696966175 NA NA prediction 0.588413396713917 Functional Gain - LRMP ENSG00000118308 CDS Human protein_coding chr12:25243015 chr12:25243014 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14278 0 0 0 0 1 LRMP chr12:25242991 3'AG 25242991 Downstream 24bp 13731 chr9 90313650 90313650 1 + G T HNSC 90313651 + 90313631 90313671 41 TCATGAATGTTCCTCGACCGGCTGGAGGCGAGTTTGGATAT TCATGAATGTTCCTCGACCTGCTGGAGGCGAGTTTGGATAT < 41bp 0.537307517450207 0.831505159431373 NA NA prediction 0.588395283962332 Functional Gain - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90313651 chr9:90313650 synonymous SNV . 0 20 hm7G_associated_SNPs_14279 0 0 1 0 2 DAPK1 chr9:90313571 3'AG 90313571 Downstream 80bp 13732 chr9 90313650 90313650 1 + G T HNSC 90313651 + 90313631 90313671 41 TCATGAATGTTCCTCGACCGGCTGGAGGCGAGTTTGGATAT TCATGAATGTTCCTCGACCTGCTGGAGGCGAGTTTGGATAT < 41bp 0.537307517450207 0.831505159431373 NA NA prediction 0.588395283962332 Functional Gain - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90313651 chr9:90313650 synonymous SNV . 0 20 hm7G_associated_SNPs_14279 0 0 1 0 2 DAPK1 chr9:90313709 5'GT 90313709 Upstream 60bp 13733 chr19 16977286 16977286 1 + G T KIRC 16977287 + 16977267 16977307 41 TCAAGTCCCTTGACCACCAGGCTGTGAACTTCAAGCAGAAC TCAAGTCCCTTGACCACCATGCTGTGAACTTCAAGCAGAAC < 41bp 0.455802376651289 0.794190341261756 NA NA prediction 0.588380682523512 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16977287 chr19:16977286 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14280 0 0 1 0 1 SIN3B chr19:16977367 5'GT 16977367 Upstream 82bp 13734 chr12 52309908 52309908 1 + G T UCEC 52309909 + 52309889 52309929 41 AGCGGTACATGGCACCCGAGGTGCTGGACGAGCAGATCCGC AGCGGTACATGGCACCCGATGTGCTGGACGAGCAGATCCGC < 41bp 0.46451165658665 0.794189945140952 NA NA prediction 0.588379890281904 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309909 chr12:52309908 nonsynonymous SNV 0.566 5 20 hm7G_associated_SNPs_14281 0 0 0 0 1 ACVRL1 chr12:52309820 3'AG 52309820 Downstream 89bp 13735 chr2 69002362 69002362 1 + G T UCEC 69002363 + 69002343 69002383 41 CTCTCTATAGCTCGGTCAAGGAGTGTGATGACTGGCGAGCA CTCTCTATAGCTCGGTCAATGAGTGTGATGACTGGCGAGCA < 41bp 0.530649151906312 0.824833362399107 NA NA prediction 0.588368420985589 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002363 chr2:69002362 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_14284 0 0 0 0 1 ARHGAP25 chr2:69002353 3'AG 69002353 Downstream 10bp 13736 chrX 16168508 16168508 1 + G T UCEC 16168509 + 16168489 16168529 41 CTCAAAGCCGCCTTTATCTGGATCATCTCCATGCTGCTGGC CTCAAAGCCGCCTTTATCTTGATCATCTCCATGCTGCTGGC < 41bp 0.537402078200394 0.831561701026808 NA NA prediction 0.58831924565283 Functional Gain - GRPR ENSG00000126010 CDS Human protein_coding chrX:16168509 chrX:16168508 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_14285 0 0 0 0 1 GRPR chrX:16168428 3'AG 16168428 Downstream 81bp 13737 chrX 134714030 134714030 1 + G T UCEC 134714031 + 134714011 134714051 41 CACTCCTGCTATGGCACAAGGAATCAATGCTGATATAAAAC CACTCCTGCTATGGCACAATGAATCAATGCTGATATAAAAC < 41bp 0.507497248772116 0.801656678165709 NA NA prediction 0.588318858787185 Functional Gain - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134714031 chrX:134714030 stopgain 1.000 1 20 hm7G_associated_SNPs_14286 0 0 0 0 1 INTS6L chrX:134714087 5'GT 134714087 Upstream 58bp 13738 chr17 18138449 18138449 1 + G T LUAD 18138450 + 18138430 18138470 41 TGCTGCTGGAAGAGGAGCTGGTGGTGCTGGACCTGCAGACT TGCTGCTGGAAGAGGAGCTTGTGGTGCTGGACCTGCAGACT < 41bp 0.466320564387758 0.794144550227511 NA NA prediction 0.588289100455021 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18138450 chr17:18138449 synonymous SNV . 0 20 hm7G_associated_SNPs_14287 0 0 1 0 1 LLGL1 chr17:18138403 3'AG 18138403 Downstream 47bp 13739 chr1 172437625 172437625 1 + G T COAD 172437626 + 172437606 172437646 41 CTGCCCATTCTGGGCCCCAGGACAGCTGTCTTCCACGGATT CTGCCCATTCTGGGCCCCATGACAGCTGTCTTCCACGGATT < 41bp 0.497354133042252 0.794088671723121 NA NA prediction 0.588177343446241 Functional Gain - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172437626 chr1:172437625 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_14290 0 0 0 0 1 C1orf105 chr1:172437589 3'AG 172437589 Downstream 37bp 13740 chr7 43982451 43982451 1 + G T UCEC 43982452 + 43982432 43982472 41 CTGGCAGGCCACCATCATGGGCCCGGTAGGTAGTAGCTGCT CTGGCAGGCCACCATCATGTGCCCGGTAGGTAGTAGCTGCT < 41bp 0.53175591101068 0.825841590909061 NA NA prediction 0.588171359796763 Functional Gain - UBE2D4 ENSG00000078967 CDS Human protein_coding chr7:43982452 chr7:43982451 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14291 0 0 1 0 1 UBE2D4 chr7:43982456 5'GT 43982456 Upstream 6bp 13741 chr19 39911931 39911931 1 + G T LUAD 39911932 + 39911912 39911952 41 TCCATCCTTAGCTAAGCCTGGATTCAAGGTAAGAGATATCT TCCATCCTTAGCTAAGCCTTGATTCAAGGTAAGAGATATCT < 41bp 0.535510893162421 0.829593065662911 NA NA prediction 0.58816434500098 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39911932 chr19:39911931 stopgain 0.001 0 20 hm7G_associated_SNPs_14292 0 0 1 0 2 PLEKHG2 chr19:39911923 3'AG 39911923 Downstream 9bp 13742 chr19 39911931 39911931 1 + G T LUAD 39911932 + 39911912 39911952 41 TCCATCCTTAGCTAAGCCTGGATTCAAGGTAAGAGATATCT TCCATCCTTAGCTAAGCCTTGATTCAAGGTAAGAGATATCT < 41bp 0.535510893162421 0.829593065662911 NA NA prediction 0.58816434500098 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39911932 chr19:39911931 stopgain 0.001 0 20 hm7G_associated_SNPs_14292 0 0 1 0 2 PLEKHG2 chr19:39911939 5'GT 39911939 Upstream 9bp 13743 chr22 21370330 21370330 1 + G T UCEC 21370331 + 21370311 21370351 41 TTTCCGTCACTCAGATCAAGGAGCTTGGAAACCGGCTGTGG TTTCCGTCACTCAGATCAATGAGCTTGGAAACCGGCTGTGG < 41bp 0.545701853999097 0.839777086244697 NA NA prediction 0.5881504644912 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21370331 chr22:21370330 stopgain 0.963 1 20 hm7G_associated_SNPs_14293 0 0 0 0 2 P2RX6 chr22:21370231 3'AG 21370231 Downstream 100bp 13744 chr22 21370330 21370330 1 + G T UCEC 21370331 + 21370311 21370351 41 TTTCCGTCACTCAGATCAAGGAGCTTGGAAACCGGCTGTGG TTTCCGTCACTCAGATCAATGAGCTTGGAAACCGGCTGTGG < 41bp 0.545701853999097 0.839777086244697 NA NA prediction 0.5881504644912 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21370331 chr22:21370330 stopgain 0.963 1 20 hm7G_associated_SNPs_14293 0 0 0 0 2 P2RX6 chr22:21370381 5'GT 21370381 Upstream 52bp 13745 chr5 156898710 156898710 1 + G T LUAD 156898711 + 156898691 156898731 41 GGGAGAGTCTGAACCTGCTGGGGAAGCTGGGCTGTGTGATC GGGAGAGTCTGAACCTGCTTGGGAAGCTGGGCTGTGTGATC < 41bp 0.544732815673948 0.838751169963615 NA NA prediction 0.588036708579333 Functional Gain - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156898711 chr5:156898710 synonymous SNV . 0 20 hm7G_associated_SNPs_14296 0 0 0 0 1 NIPAL4 chr5:156898665 3'AG 156898665 Downstream 46bp 13746 chr19 16870113 16870113 1 + G T GBM 16870114 + 16870094 16870134 41 CAGGATGTGTACCGAGATTGGACCCCGCCCAGCAAGGAGCT CAGGATGTGTACCGAGATTTGACCCCGCCCAGCAAGGAGCT < 41bp 0.46264900118506 0.793973070015625 NA NA prediction 0.587946140031251 Functional Gain - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16870114 chr19:16870113 nonsynonymous SNV 0.564 3 20 hm7G_associated_SNPs_14298 0 0 0 0 1 NWD1 chr19:16870036 3'AG 16870036 Downstream 78bp 13747 chr6 127901578 127901578 1 + G T LUSC 127901579 + 127901559 127901599 41 CCTGAGACAATGAACAAGTGGAACACCTTTTACCAGGTTCC CCTGAGACAATGAACAAGTTGAACACCTTTTACCAGGTTCC < 41bp 0.496220363933967 0.79396985374139 NA NA prediction 0.58793970748278 Functional Gain - C6orf58 ENSG00000184530 CDS Human protein_coding chr6:127901579 chr6:127901578 nonsynonymous SNV 0.801 4 20 hm7G_associated_SNPs_14299 0 0 1 0 1 C6orf58 chr6:127901594 5'GT 127901594 Upstream 17bp 13748 chr3 179082089 179082089 1 + G T LUAD 179082090 + 179082070 179082110 41 TTTCACTCTCATTAGTCCAGGCACAGATGTCACTACAGAGC TTTCACTCTCATTAGTCCATGCACAGATGTCACTACAGAGC < 41bp 0.501344181725162 0.795309849189815 NA NA prediction 0.587931334929307 Functional Gain - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082090 chr3:179082089 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14300 0 0 1 0 1 MFN1 chr3:179082085 3'AG 179082085 Downstream 5bp 13749 chr20 30954253 30954253 1 + G T COAD 30954254 + 30954234 30954274 41 GCAGGTCATAGAGGCAGAAGGACTAAAGGAAATGAGGTTTG GCAGGTCATAGAGGCAGAATGACTAAAGGAAATGAGGTTTG < 41bp 0.521687292595914 0.815647912416097 NA NA prediction 0.587921239640366 Functional Gain - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:30954254 chr20:30954253 stopgain 1.000 1 20 hm7G_associated_SNPs_14301 0 0 1 0 2 ASXL1 chr20:30954187 3'AG 30954187 Downstream 67bp 13750 chr20 30954253 30954253 1 + G T COAD 30954254 + 30954234 30954274 41 GCAGGTCATAGAGGCAGAAGGACTAAAGGAAATGAGGTTTG GCAGGTCATAGAGGCAGAATGACTAAAGGAAATGAGGTTTG < 41bp 0.521687292595914 0.815647912416097 NA NA prediction 0.587921239640366 Functional Gain - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:30954254 chr20:30954253 stopgain 1.000 1 20 hm7G_associated_SNPs_14301 0 0 1 0 2 ASXL1 chr20:30954269 5'GT 30954269 Upstream 17bp 13751 chr3 50252882 50252882 1 + G T LGG 50252883 + 50252863 50252903 41 CCTGCTACTCAAGTCCTCAGGGGTCGTGGGTGAGCCTCACA CCTGCTACTCAAGTCCTCATGGGTCGTGGGTGAGCCTCACA < 41bp 0.463093103879106 0.793953497979284 NA NA prediction 0.587906995958568 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252883 chr3:50252882 . 0.995 2 20 hm7G_associated_SNPs_14302 0 0 1 0 2 SLC38A3 chr3:50252818 3'AG 50252818 Downstream 65bp 13752 chr3 50252882 50252882 1 + G T LGG 50252883 + 50252863 50252903 41 CCTGCTACTCAAGTCCTCAGGGGTCGTGGGTGAGCCTCACA CCTGCTACTCAAGTCCTCATGGGTCGTGGGTGAGCCTCACA < 41bp 0.463093103879106 0.793953497979284 NA NA prediction 0.587906995958568 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252883 chr3:50252882 . 0.995 2 20 hm7G_associated_SNPs_14302 0 0 1 0 2 SLC38A3 chr3:50252891 5'GT 50252891 Upstream 10bp 13753 chr19 49842653 49842653 1 + G T STAD 49842654 + 49842634 49842674 41 CATAGTGGGCATTTGCCTGGGCGTCGGCCTACTCGAGGTGA CATAGTGGGCATTTGCCTGTGCGTCGGCCTACTCGAGGTGA < 41bp 0.517240524670096 0.811181029343305 NA NA prediction 0.587881009346419 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842654 chr19:49842653 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_14303 0 0 1 0 2 CD37 chr19:49842587 3'AG 49842587 Downstream 67bp 13754 chr19 49842653 49842653 1 + G T STAD 49842654 + 49842634 49842674 41 CATAGTGGGCATTTGCCTGGGCGTCGGCCTACTCGAGGTGA CATAGTGGGCATTTGCCTGTGCGTCGGCCTACTCGAGGTGA < 41bp 0.517240524670096 0.811181029343305 NA NA prediction 0.587881009346419 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842654 chr19:49842653 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_14303 0 0 1 0 2 CD37 chr19:49842670 5'GT 49842670 Upstream 18bp 13755 chr3 148583320 148583320 1 + G T LUSC 148583321 + 148583301 148583341 41 CAGACATCATAAAGGACTTGGCCAAAACCAATGAGGTAAGC CAGACATCATAAAGGACTTTGCCAAAACCAATGAGGTAAGC < 41bp 0.489042931588883 0.793933286523153 NA NA prediction 0.587866573046306 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148583321 chr3:148583320 nonsynonymous SNV 0.841 3 20 hm7G_associated_SNPs_14304 0 0 0 0 2 CPA3 chr3:148583260 3'AG 148583260 Downstream 61bp 13756 chr3 148583320 148583320 1 + G T LUSC 148583321 + 148583301 148583341 41 CAGACATCATAAAGGACTTGGCCAAAACCAATGAGGTAAGC CAGACATCATAAAGGACTTTGCCAAAACCAATGAGGTAAGC < 41bp 0.489042931588883 0.793933286523153 NA NA prediction 0.587866573046306 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148583321 chr3:148583320 nonsynonymous SNV 0.841 3 20 hm7G_associated_SNPs_14304 0 0 0 0 2 CPA3 chr3:148583335 5'GT 148583335 Upstream 16bp 13757 chr17 73569684 73569684 1 + G T LUSC 73569685 + 73569665 73569705 41 CCGCCCTGGTAACGGTGCGGGCCCCAAGAAGGCCCCGAGCC CCGCCCTGGTAACGGTGCGTGCCCCAAGAAGGCCCCGAGCC < 41bp 0.544422992989425 0.838352963523773 NA NA prediction 0.587859941068696 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73569685 chr17:73569684 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_14305 0 0 0 0 1 LLGL2 chr17:73569712 5'GT 73569712 Upstream 29bp 13758 chr19 54386432 54386432 1 + G T LUSC 54386433 + 54386413 54386453 41 CCAGGGGTATCGGAAAGCAGGGCCTGCAATGTCAAGGTAAG CCAGGGGTATCGGAAAGCATGGCCTGCAATGTCAAGGTAAG < 41bp 0.465584679443677 0.793921704133385 NA NA prediction 0.58784340826677 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54386433 chr19:54386432 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14306 0 0 0 0 2 PRKCG chr19:54386417 3'AG 54386417 Downstream 16bp 13759 chr19 54386432 54386432 1 + G T LUSC 54386433 + 54386413 54386453 41 CCAGGGGTATCGGAAAGCAGGGCCTGCAATGTCAAGGTAAG CCAGGGGTATCGGAAAGCATGGCCTGCAATGTCAAGGTAAG < 41bp 0.465584679443677 0.793921704133385 NA NA prediction 0.58784340826677 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54386433 chr19:54386432 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14306 0 0 0 0 2 PRKCG chr19:54386448 5'GT 54386448 Upstream 17bp 13760 chr9 71840272 71840272 1 + G T LIHC 71840273 + 71840253 71840293 41 TAAAGGAAATGACCCGAACGGGTCTGGCAACTAAAGATGGC TAAAGGAAATGACCCGAACTGGTCTGGCAACTAAAGATGGC < 41bp 0.475322946817097 0.793921042762481 NA NA prediction 0.587842085524962 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71840273 chr9:71840272 synonymous SNV . 0 20 hm7G_associated_SNPs_14307 0 0 1 0 1 TJP2 chr9:71840323 5'GT 71840323 Upstream 52bp 13761 chr2 86346103 86346103 1 + G T UCEC 86346104 + 86346084 86346124 41 TAAGTGAAGCCGCCCTGAAGGAACGAATTGAGCTCAGAAAA TAAGTGAAGCCGCCCTGAATGAACGAATTGAGCTCAGAAAA < 41bp 0.486141039293967 0.793892482810105 NA NA prediction 0.587784965620211 Functional Gain - PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86346104 chr2:86346103 nonsynonymous SNV 0.964 1 20 hm7G_associated_SNPs_14309 0 0 1 0 1 PTCD3 chr2:86346167 5'GT 86346167 Upstream 65bp 13762 chr1 10239588 10239588 1 + G T LUSC 10239589 + 10239569 10239609 41 CCCACGGACCCCTTCAACCGGCAGACGCTGACAGAGAGCAT CCCACGGACCCCTTCAACCTGCAGACGCTGACAGAGAGCAT < 41bp 0.536078072577205 0.829965313210603 NA NA prediction 0.587774481266797 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10239589 chr1:10239588 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14310 0 0 1 0 1 UBE4B chr1:10239620 5'GT 10239620 Upstream 33bp 13763 chr2 26486306 26486306 1 + G T LUAD 26486307 + 26486287 26486327 41 ATATAAGGAATGTTGTGGTGGTGGATGGTGTTCGCACTCCA ATATAAGGAATGTTGTGGTTGTGGATGGTGTTCGCACTCCA < 41bp 0.522829228128526 0.816711887046362 NA NA prediction 0.587765317835673 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26486307 chr2:26486306 synonymous SNV . 0 20 hm7G_associated_SNPs_14311 0 0 1 2 1 HADHB chr2:26486248 3'AG 26486248 Downstream 59bp 13764 chr16 19485551 19485551 1 + G T THCA 19485552 + 19485532 19485572 41 ACTCCATGTTCAGGCTTGTGGAGAGGTACGAGATGCCACGG ACTCCATGTTCAGGCTTGTTGAGAGGTACGAGATGCCACGG < 41bp 0.54056755952237 0.834441899551191 NA NA prediction 0.587748680057641 Functional Gain - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19485552 chr16:19485551 synonymous SNV . 0 20 hm7G_associated_SNPs_14312 0 0 0 0 1 TMC5 chr16:19485598 5'GT 19485598 Upstream 48bp 13765 chr22 21369622 21369622 1 + G T UCEC 21369623 + 21369603 21369643 41 TTGGGATCGTGGTCTATGTGGTAGGGTAAGAGAGAAGAGCT TTGGGATCGTGGTCTATGTTGTAGGGTAAGAGAGAAGAGCT < 41bp 0.511327707458692 0.805200689429104 NA NA prediction 0.587745963940825 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21369623 chr22:21369622 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_14313 0 0 0 0 1 P2RX6 chr22:21369622 5'GT 21369622 Upstream 1bp 13766 chr1 183205649 183205649 1 + G T LUSC 183205650 + 183205630 183205670 41 CAAGGGAGGCCACTCAAGCGGAAATTGAAGCAGATAGGTCT CAAGGGAGGCCACTCAAGCTGAAATTGAAGCAGATAGGTCT < 41bp 0.47139285794364 0.793857048548536 NA NA prediction 0.587714097097073 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183205650 chr1:183205649 synonymous SNV . 0 20 hm7G_associated_SNPs_14314 0 0 0 0 2 LAMC2 chr1:183205595 3'AG 183205595 Downstream 55bp 13767 chr1 183205649 183205649 1 + G T LUSC 183205650 + 183205630 183205670 41 CAAGGGAGGCCACTCAAGCGGAAATTGAAGCAGATAGGTCT CAAGGGAGGCCACTCAAGCTGAAATTGAAGCAGATAGGTCT < 41bp 0.47139285794364 0.793857048548536 NA NA prediction 0.587714097097073 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183205650 chr1:183205649 synonymous SNV . 0 20 hm7G_associated_SNPs_14314 0 0 0 0 2 LAMC2 chr1:183205739 5'GT 183205739 Upstream 91bp 13768 chr19 52206582 52206582 1 + G T UCEC 52206583 + 52206563 52206603 41 CTATTCCTGGAAGTTCGCAGGAGGAGGTGTGAGTCGGGGCG CTATTCCTGGAAGTTCGCATGAGGAGGTGTGAGTCGGGGCG < 41bp 0.492571324268473 0.793828830688555 NA NA prediction 0.587657661377111 Functional Gain - SPACA6 ENSG00000182310 ncRNA_exonic Human protein_coding chr19:52206583 chr19:52206582 . . 0 20 hm7G_associated_SNPs_14317 0 0 1 0 2 SPACA6 chr19:52206588 5'GT 52206588 Upstream 7bp 13769 chr19 52206582 52206582 1 + G T UCEC 52206583 + 52206563 52206603 41 CTATTCCTGGAAGTTCGCAGGAGGAGGTGTGAGTCGGGGCG CTATTCCTGGAAGTTCGCATGAGGAGGTGTGAGTCGGGGCG < 41bp 0.492571324268473 0.793828830688555 NA NA prediction 0.587657661377111 Functional Gain - SPACA6 ENSG00000182310 ncRNA_exonic Human other chr19:52206583 chr19:52206582 . . 0 20 hm7G_associated_SNPs_14317 0 0 1 0 2 SPACA6 chr19:52206590 5'GT 52206590 Upstream 9bp 13770 chr15 67358628 67358628 1 + G T SARC 67358629 + 67358609 67358649 41 CAAGAAACTCAAGAAGACGGGGCAGCTGGACGAGCTGGAGA CAAGAAACTCAAGAAGACGTGGCAGCTGGACGAGCTGGAGA < 41bp 0.52503218455233 0.818857093878467 NA NA prediction 0.587649818652273 Functional Gain - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67358629 chr15:67358628 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14318 0 0 1 0 1 SMAD3 chr15:67358698 5'GT 67358698 Upstream 71bp 13771 chr19 50964862 50964862 1 + G T BLCA 50964863 + 50964843 50964883 41 TGTGTCCGACCTTATCGTGGGCAATGAATACTATTTCCGAG TGTGTCCGACCTTATCGTGTGCAATGAATACTATTTCCGAG < 41bp 0.538142613756958 0.831953292951926 NA NA prediction 0.587621358389937 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50964863 chr19:50964862 nonsynonymous SNV 0.202 3 20 hm7G_associated_SNPs_14321 0 0 0 0 2 MYBPC2 chr19:50964799 3'AG 50964799 Downstream 64bp 13772 chr19 50964862 50964862 1 + G T BLCA 50964863 + 50964843 50964883 41 TGTGTCCGACCTTATCGTGGGCAATGAATACTATTTCCGAG TGTGTCCGACCTTATCGTGTGCAATGAATACTATTTCCGAG < 41bp 0.538142613756958 0.831953292951926 NA NA prediction 0.587621358389937 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50964863 chr19:50964862 nonsynonymous SNV 0.202 3 20 hm7G_associated_SNPs_14321 0 0 0 0 2 MYBPC2 chr19:50964958 5'GT 50964958 Upstream 97bp 13773 chr20 39985815 39985815 1 + G T SKCM 39985816 + 39985796 39985836 41 GGTCATCTCTGACATCGACGGCACCATCACCAAGTGAGGCC GGTCATCTCTGACATCGACTGCACCATCACCAAGTGAGGCC < 41bp 0.551249063720027 0.845056967701795 NA NA prediction 0.587615807963536 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39985816 chr20:39985815 nonsynonymous SNV 0.594 5 20 hm7G_associated_SNPs_14322 0 0 1 0 1 LPIN3 chr20:39985828 5'GT 39985828 Upstream 14bp 13774 chr7 150840846 150840846 1 + G T LUAD 150840847 + 150840827 150840867 41 GGGGTGGACGTGAGGAGCCGGGACGCCCGGGGCCTGACTCC GGGGTGGACGTGAGGAGCCTGGACGCCCGGGGCCTGACTCC < 41bp 0.529696588131055 0.82349926325202 NA NA prediction 0.587605350241929 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150840847 chr7:150840846 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_14323 0 0 1 0 1 AGAP3 chr7:150840824 3'AG 150840824 Downstream 23bp 13775 chr10 105178211 105178211 1 + G T UCEC 105178212 + 105178192 105178232 41 GGTAGTTGGTAGATGTGAAGGTTTTAGAGAAGACCAAAGAT GGTAGTTGGTAGATGTGAATGTTTTAGAGAAGACCAAAGAT < 41bp 0.531769173767442 0.825561520174443 NA NA prediction 0.587584692814002 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105178212 chr10:105178211 nonsynonymous SNV 0.876 3 20 hm7G_associated_SNPs_14325 0 0 0 0 1 PDCD11 chr10:105178197 3'AG 105178197 Downstream 15bp 13776 chr5 139892992 139892992 1 + G T LUAD 139892993 + 139892973 139893013 41 GTGTCGAAACCATTGTGAAGGCTAAAGACCAGCAAGCTGCA GTGTCGAAACCATTGTGAATGCTAAAGACCAGCAAGCTGCA < 41bp 0.528112555229158 0.821887766066487 NA NA prediction 0.587550421674658 Functional Gain - ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139892993 chr5:139892992 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14327 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139892948 3'AG 139892948 Downstream 45bp 13777 chr5 139892992 139892992 1 + G T LUAD 139892993 + 139892973 139893013 41 GTGTCGAAACCATTGTGAAGGCTAAAGACCAGCAAGCTGCA GTGTCGAAACCATTGTGAATGCTAAAGACCAGCAAGCTGCA < 41bp 0.528112555229158 0.821887766066487 NA NA prediction 0.587550421674658 Functional Gain - ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139892993 chr5:139892992 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14327 0 0 1 0 2 ANKHD1;ANKHD1-EIF4EBP3 chr5:139893064 5'GT 139893064 Upstream 73bp 13778 chr17 27834971 27834971 1 + G T PCPG 27834972 + 27834952 27834992 41 GCTTAGAGAACAAATGTCTGGCTATAAGCGAATGAGGCGAC GCTTAGAGAACAAATGTCTTGCTATAAGCGAATGAGGCGAC < 41bp 0.519598048512386 0.813360373328065 NA NA prediction 0.587524649631357 Functional Gain - TAOK1 ENSG00000160551 CDS Human protein_coding chr17:27834972 chr17:27834971 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14328 0 0 1 0 1 TAOK1 chr17:27834914 3'AG 27834914 Downstream 58bp 13779 chr4 113299026 113299026 1 + G T SKCM 113299027 + 113299007 113299047 41 CGCCAGATGTGTCGGAAGAGGACAAGAGCGAGGACCAGCGC CGCCAGATGTGTCGGAAGATGACAAGAGCGAGGACCAGCGC < 41bp 0.502373719461486 0.796131839335211 NA NA prediction 0.58751623974745 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113299027 chr4:113299026 nonsynonymous SNV 0.744 1 20 hm7G_associated_SNPs_14329 0 0 0 0 1 ALPK1 chr4:113299054 5'GT 113299054 Upstream 29bp 13780 chr19 15166318 15166318 1 + G T COAD 15166319 + 15166299 15166339 41 TGTGTTCACGAAGAGGAAAGGACATATCTTGGAACTTCTGA TGTGTTCACGAAGAGGAAATGACATATCTTGGAACTTCTGA < 41bp 0.494757963591918 0.793752599244275 NA NA prediction 0.58750519848855 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15166319 chr19:15166318 stopgain 0.085 0 20 hm7G_associated_SNPs_14330 0 0 0 0 2 CASP14 chr19:15166241 3'AG 15166241 Downstream 78bp 13781 chr19 15166318 15166318 1 + G T COAD 15166319 + 15166299 15166339 41 TGTGTTCACGAAGAGGAAAGGACATATCTTGGAACTTCTGA TGTGTTCACGAAGAGGAAATGACATATCTTGGAACTTCTGA < 41bp 0.494757963591918 0.793752599244275 NA NA prediction 0.58750519848855 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15166319 chr19:15166318 stopgain 0.085 0 20 hm7G_associated_SNPs_14330 0 0 0 0 2 CASP14 chr19:15166344 5'GT 15166344 Upstream 27bp 13782 chr17 43317929 43317929 1 + G T LUSC 43317930 + 43317910 43317950 41 ATGTGGGGGCGCTGCTGGAGGACACAGAGACCAAGAACGCT ATGTGGGGGCGCTGCTGGATGACACAGAGACCAAGAACGCT < 41bp 0.545142745545473 0.838889364487367 NA NA prediction 0.587493237883789 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43317930 chr17:43317929 nonsynonymous SNV 0.961 3 20 hm7G_associated_SNPs_14332 0 0 1 0 2 FMNL1 chr17:43317843 3'AG 43317843 Downstream 87bp 13783 chr17 43317929 43317929 1 + G T LUSC 43317930 + 43317910 43317950 41 ATGTGGGGGCGCTGCTGGAGGACACAGAGACCAAGAACGCT ATGTGGGGGCGCTGCTGGATGACACAGAGACCAAGAACGCT < 41bp 0.545142745545473 0.838889364487367 NA NA prediction 0.587493237883789 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43317930 chr17:43317929 nonsynonymous SNV 0.961 3 20 hm7G_associated_SNPs_14332 0 0 1 0 2 FMNL1 chr17:43317992 5'GT 43317992 Upstream 64bp 13784 chr1 46033797 46033797 1 + G T ESCA 46033798 + 46033778 46033818 41 CTGTCCAACTTCAACAGTCGGCAGATTGATGACATACTCAG CTGTCCAACTTCAACAGTCTGCAGATTGATGACATACTCAG < 41bp 0.539687997242992 0.833423543443895 NA NA prediction 0.587471092401807 Functional Gain - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033798 chr1:46033797 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_14333 0 0 1 0 1 AKR1A1 chr1:46033849 5'GT 46033849 Upstream 53bp 13785 chrX 70340889 70340889 1 + G T HNSC 70340890 + 70340870 70340910 41 GGCTGAATACTACCGGCCAGGGCCTGCAGGAAGTGGGGGCT GGCTGAATACTACCGGCCATGGCCTGCAGGAAGTGGGGGCT < 41bp 0.549543119999397 0.843267970255444 NA NA prediction 0.587449700512095 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70340890 chrX:70340889 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14334 0 0 1 0 1 MED12 chrX:70340821 3'AG 70340821 Downstream 69bp 13786 chr5 154188143 154188143 1 + G T STAD 154188144 + 154188124 154188164 41 TCAAGCAGCTGGCTCTGGAGGACGCCAAAGAAGGCTACAGG TCAAGCAGCTGGCTCTGGATGACGCCAAAGAAGGCTACAGG < 41bp 0.536844256945886 0.830565273705067 NA NA prediction 0.587442033518361 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154188144 chr5:154188143 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14335 0 0 1 0 1 LARP1 chr5:154188163 5'GT 154188163 Upstream 21bp 13787 chr6 161536209 161536209 1 + G T COAD 161536210 + 161536190 161536230 41 TATGTATAAAGTGGGGATGGGACATAAGCCACCAATCCCTG TATGTATAAAGTGGGGATGTGACATAAGCCACCAATCCCTG < 41bp 0.516105893755245 0.809825205144467 NA NA prediction 0.587438622778445 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161536210 chr6:161536209 stopgain 1.000 1 20 hm7G_associated_SNPs_14336 0 0 1 0 1 MAP3K4 chr6:161536155 3'AG 161536155 Downstream 55bp 13788 chr2 119731997 119731997 1 + G T LUAD 119731998 + 119731978 119732018 41 AGGGAGCCAAGGGGGCTATGGGACGAGATGGAGCAACAGGT AGGGAGCCAAGGGGGCTATTGGACGAGATGGAGCAACAGGT < 41bp 0.543967319722668 0.837668056833344 NA NA prediction 0.587401474221351 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119731998 chr2:119731997 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_14339 0 0 0 0 2 MARCO chr2:119731909 3'AG 119731909 Downstream 89bp 13789 chr2 119731997 119731997 1 + G T LUAD 119731998 + 119731978 119732018 41 AGGGAGCCAAGGGGGCTATGGGACGAGATGGAGCAACAGGT AGGGAGCCAAGGGGGCTATTGGACGAGATGGAGCAACAGGT < 41bp 0.543967319722668 0.837668056833344 NA NA prediction 0.587401474221351 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119731998 chr2:119731997 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_14339 0 0 0 0 2 MARCO chr2:119732016 5'GT 119732016 Upstream 20bp 13790 chr17 80398875 80398875 1 + G T UCEC 80398876 + 80398856 80398896 41 CTCATTTGTGATTTCAGGAGGATTTGATGAAGATGTTAAAG CTCATTTGTGATTTCAGGATGATTTGATGAAGATGTTAAAG < 41bp 0.526806676494806 0.82050383380177 NA NA prediction 0.587394314613927 Functional Gain - HEXDC ENSG00000169660 CDS Human protein_coding chr17:80398876 chr17:80398875 stopgain 0.218 0 20 hm7G_associated_SNPs_14340 0 0 1 0 1 HEXDC chr17:80398873 3'AG 80398873 Downstream 3bp 13791 chr5 2752551 2752551 1 + G T SKCM 2752552 + 2752532 2752572 41 CCTGGATCCGGGGCGCCTTGGTTGCGAATTGCCAGGAGGGC CCTGGATCCGGGGCGCCTTTGTTGCGAATTGCCAGGAGGGC < 41bp 0.501557813806238 0.795250899408803 NA NA prediction 0.58738617120513 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2752552 chr5:2752551 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_14341 0 0 0 0 1 C5orf38 chr5:2752578 5'GT 2752578 Upstream 28bp 13792 chr16 84492742 84492742 1 + G T PRAD 84492743 + 84492723 84492763 41 CAGGAATGCAGTGGAGGAAGGCAAGGGTATTTTTTACAACA CAGGAATGCAGTGGAGGAATGCAAGGGTATTTTTTACAACA < 41bp 0.534308678540752 0.828000255265337 NA NA prediction 0.58738315344917 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84492743 chr16:84492742 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_14342 0 0 0 0 2 ATP2C2 chr16:84492726 3'AG 84492726 Downstream 17bp 13793 chr16 84492742 84492742 1 + G T PRAD 84492743 + 84492723 84492763 41 CAGGAATGCAGTGGAGGAAGGCAAGGGTATTTTTTACAACA CAGGAATGCAGTGGAGGAATGCAAGGGTATTTTTTACAACA < 41bp 0.534308678540752 0.828000255265337 NA NA prediction 0.58738315344917 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84492743 chr16:84492742 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_14342 0 0 0 0 2 ATP2C2 chr16:84492794 5'GT 84492794 Upstream 53bp 13794 chr16 57504902 57504902 1 + G T LUAD 57504903 + 57504883 57504923 41 CTAGGTTTTACTACAATGTGGAGTCCTGTGGCTCTCTGCGT CTAGGTTTTACTACAATGTTGAGTCCTGTGGCTCTCTGCGT < 41bp 0.511619684404535 0.805297637086438 NA NA prediction 0.587355905363806 Functional Gain - POLR2C ENSG00000102978 CDS Human protein_coding chr16:57504903 chr16:57504902 synonymous SNV . 0 20 hm7G_associated_SNPs_14344 0 0 1 0 1 POLR2C chr16:57504887 3'AG 57504887 Downstream 16bp 13795 chr1 16378216 16378216 1 + G T STAD 16378217 + 16378197 16378237 41 GTGGCCAGGAGCTGCTATCGGGCGCCTCTTTGGGGAGACTC GTGGCCAGGAGCTGCTATCTGGCGCCTCTTTGGGGAGACTC < 41bp 0.548950519397348 0.842622047318997 NA NA prediction 0.587343055843298 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16378217 chr1:16378216 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_14346 0 0 0 0 2 CLCNKB chr1:16378205 3'AG 16378205 Downstream 12bp 13796 chr1 16378216 16378216 1 + G T STAD 16378217 + 16378197 16378237 41 GTGGCCAGGAGCTGCTATCGGGCGCCTCTTTGGGGAGACTC GTGGCCAGGAGCTGCTATCTGGCGCCTCTTTGGGGAGACTC < 41bp 0.548950519397348 0.842622047318997 NA NA prediction 0.587343055843298 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16378217 chr1:16378216 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_14346 0 0 0 0 2 CLCNKB chr1:16378315 5'GT 16378315 Upstream 100bp 13797 chr1 231337158 231337158 1 + G T UCEC 231337159 + 231337139 231337179 41 TCAGGAGCAGTGGGTCAAAGGCGCCCTGGAGCCGAAAGTGT TCAGGAGCAGTGGGTCAAATGCGCCCTGGAGCCGAAAGTGT < 41bp 0.549138983070828 0.842810114053955 NA NA prediction 0.587342261966253 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231337159 chr1:231337158 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14347 0 0 0 0 1 TRIM67 chr1:231337104 3'AG 231337104 Downstream 55bp 13798 chr3 9956381 9956381 1 + G T LUAD 9956382 + 9956362 9956402 41 GTCTCTTACAGACACCTGGGGCTCTTGATCCTGGCACTGCT GTCTCTTACAGACACCTGGTGCTCTTGATCCTGGCACTGCT < 41bp 0.474545956633603 0.793657711423739 NA NA prediction 0.587315422847478 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9956382 chr3:9956381 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_14350 0 0 1 1 2 IL17RE chr3:9956363 3'AG 9956363 Downstream 19bp 13799 chr3 9956381 9956381 1 + G T LUAD 9956382 + 9956362 9956402 41 GTCTCTTACAGACACCTGGGGCTCTTGATCCTGGCACTGCT GTCTCTTACAGACACCTGGTGCTCTTGATCCTGGCACTGCT < 41bp 0.474545956633603 0.793657711423739 NA NA prediction 0.587315422847478 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9956382 chr3:9956381 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_14350 0 0 1 1 2 IL17RE chr3:9956461 5'GT 9956461 Upstream 81bp 13800 chr2 17773463 17773463 1 + G T UCEC 17773464 + 17773444 17773484 41 CTCAAGGACTGTCCAAGTGGGAGGCTAAATCTCGAGGAATT CTCAAGGACTGTCCAAGTGTGAGGCTAAATCTCGAGGAATT < 41bp 0.507245788448198 0.800903462784696 NA NA prediction 0.587315348672995 Functional Gain - VSNL1 ENSG00000163032 CDS Human protein_coding chr2:17773464 chr2:17773463 nonsynonymous SNV 0.586 4 20 hm7G_associated_SNPs_14351 0 0 1 0 1 VSNL1 chr2:17773503 5'GT 17773503 Upstream 41bp 13801 chr16 11439536 11439536 1 + G T LUSC 11439537 + 11439517 11439557 41 GGTAGTGATGGCGGACCGCGGCGAGGCTCGGCTGAGGGACC GGTAGTGATGGCGGACCGCTGCGAGGCTCGGCTGAGGGACC < 41bp 0.517877738763226 0.811524169381076 NA NA prediction 0.587292861235701 Functional Gain - RMI2 ENSG00000175643 CDS Human protein_coding chr16:11439537 chr16:11439536 nonsynonymous SNV 0.106 3 20 hm7G_associated_SNPs_14353 0 0 1 0 1 RMI2 chr16:11439623 5'GT 11439623 Upstream 88bp 13802 chr10 12126693 12126693 1 + G T UCEC 12126694 + 12126674 12126714 41 GGTTTGAGGAACTGCAAAAGGAGACGTTTACCACAGAAGAG GGTTTGAGGAACTGCAAAATGAGACGTTTACCACAGAAGAG < 41bp 0.476970259124353 0.793636333759967 NA NA prediction 0.587272667519933 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12126694 chr10:12126693 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_14355 0 0 1 0 1 DHTKD1 chr10:12126750 5'GT 12126750 Upstream 58bp 13803 chr7 73500114 73500114 1 + G T UCEC 73500115 + 73500095 73500135 41 TGTGCAAGCTGCGGCCAGAGGATCTATGATGGCCAGTACCT TGTGCAAGCTGCGGCCAGATGATCTATGATGGCCAGTACCT < 41bp 0.480249451616289 0.793629018437234 NA NA prediction 0.587258036874467 Functional Gain - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73500115 chr7:73500114 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14356 0 0 1 2 2 LIMK1 chr7:73500078 3'AG 73500078 Downstream 37bp 13804 chr7 73500114 73500114 1 + G T UCEC 73500115 + 73500095 73500135 41 TGTGCAAGCTGCGGCCAGAGGATCTATGATGGCCAGTACCT TGTGCAAGCTGCGGCCAGATGATCTATGATGGCCAGTACCT < 41bp 0.480249451616289 0.793629018437234 NA NA prediction 0.587258036874467 Functional Gain - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73500115 chr7:73500114 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14356 0 0 1 2 2 LIMK1 chr7:73500174 5'GT 73500174 Upstream 61bp 13805 chr19 51629373 51629373 1 + G T UCEC 51629374 + 51629354 51629394 41 GACCATGACTGTCTTCCAAGGAGACGGCACAGGTAGGATGG GACCATGACTGTCTTCCAATGAGACGGCACAGGTAGGATGG < 41bp 0.489777903807397 0.793601898917184 NA NA prediction 0.587203797834369 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51629374 chr19:51629373 stopgain 0.004 0 20 hm7G_associated_SNPs_14358 0 0 0 0 2 SIGLEC9 chr19:51629338 3'AG 51629338 Downstream 36bp 13806 chr19 51629373 51629373 1 + G T UCEC 51629374 + 51629354 51629394 41 GACCATGACTGTCTTCCAAGGAGACGGCACAGGTAGGATGG GACCATGACTGTCTTCCAATGAGACGGCACAGGTAGGATGG < 41bp 0.489777903807397 0.793601898917184 NA NA prediction 0.587203797834369 Functional Gain - SIGLEC9 ENSG00000129450 CDS Human protein_coding chr19:51629374 chr19:51629373 stopgain 0.004 0 20 hm7G_associated_SNPs_14358 0 0 0 0 2 SIGLEC9 chr19:51629385 5'GT 51629385 Upstream 13bp 13807 chr1 45097869 45097869 1 + G T LIHC 45097870 + 45097850 45097890 41 GAGGAGCAGAGGGGCCGGCGGGAGGGAGGAAGTAGGTTTGT GAGGAGCAGAGGGGCCGGCTGGAGGGAGGAAGTAGGTTTGT < 41bp 0.505799106700932 0.799383106994644 NA NA prediction 0.587168000587423 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45097870 chr1:45097869 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14359 0 0 1 0 1 RNF220 chr1:45097880 5'GT 45097880 Upstream 12bp 13808 chr19 36361842 36361842 1 + G T LUSC 36361843 + 36361823 36361863 41 GTGTGGAGCAGGCTACGCAGGCCATCCCCATGGAGCGCTGG GTGTGGAGCAGGCTACGCATGCCATCCCCATGGAGCGCTGG < 41bp 0.558688309609795 0.852261746916985 NA NA prediction 0.58714687461438 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36361843 chr19:36361842 nonsynonymous SNV 0.393 1 20 hm7G_associated_SNPs_14360 0 0 0 0 2 APLP1 chr19:36361798 3'AG 36361798 Downstream 45bp 13809 chr19 36361842 36361842 1 + G T LUSC 36361843 + 36361823 36361863 41 GTGTGGAGCAGGCTACGCAGGCCATCCCCATGGAGCGCTGG GTGTGGAGCAGGCTACGCATGCCATCCCCATGGAGCGCTGG < 41bp 0.558688309609795 0.852261746916985 NA NA prediction 0.58714687461438 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36361843 chr19:36361842 nonsynonymous SNV 0.393 1 20 hm7G_associated_SNPs_14360 0 0 0 0 2 APLP1 chr19:36361930 5'GT 36361930 Upstream 89bp 13810 chr5 131630655 131630655 1 + G T UCEC 131630656 + 131630636 131630676 41 GCAGGAGAGCTGCCTGGATGGCTGGGAGTTCAGCCAGGACG GCAGGAGAGCTGCCTGGATTGCTGGGAGTTCAGCCAGGACG < 41bp 0.480359904989829 0.793547657400907 NA NA prediction 0.587095314801813 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131630656 chr5:131630655 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14362 0 0 0 0 1 SLC22A4 chr5:131630702 5'GT 131630702 Upstream 48bp 13811 chr20 32663769 32663769 1 + G T LUSC 32663770 + 32663750 32663790 41 GTCACAGTCCCTTTGGTCCGGCGTGTCAAAACTAACGTACC GTCACAGTCCCTTTGGTCCTGCGTGTCAAAACTAACGTACC < 41bp 0.467625316731265 0.79353325519155 NA NA prediction 0.5870665103831 Functional Gain - RALY ENSG00000125970 CDS Human protein_coding chr20:32663770 chr20:32663769 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_14366 0 0 1 0 1 RALY chr20:32663680 3'AG 32663680 Downstream 90bp 13812 chr15 101434182 101434182 1 + G T COAD 101434183 + 101434163 101434203 41 ACTTCCCCCTGCTGATGCTGGTGTGGAAGCTGGCACCCGCC ACTTCCCCCTGCTGATGCTTGTGTGGAAGCTGGCACCCGCC < 41bp 0.53923087231625 0.832763357144232 NA NA prediction 0.587064969655964 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101434183 chr15:101434182 synonymous SNV . 0 20 hm7G_associated_SNPs_14367 0 0 0 0 1 ALDH1A3 chr15:101434159 3'AG 101434159 Downstream 24bp 13813 chr3 128060143 128060143 1 + G T COAD 128060144 + 128060124 128060164 41 TCAGCCATGCAAGGAGACCGGCTGGGCATCTGCGTCACCCA TCAGCCATGCAAGGAGACCTGCTGGGCATCTGCGTCACCCA < 41bp 0.511392040171608 0.804918923391502 NA NA prediction 0.587053766439787 Functional Gain - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:128060144 chr3:128060143 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14368 0 0 0 0 1 EEFSEC chr3:128060076 3'AG 128060076 Downstream 68bp 13814 chr3 113503220 113503220 1 + G T STAD 113503221 + 113503201 113503241 41 AAGCATCTACATCCCCAGAGGAGTAAACGTGTCTGCTCTTA AAGCATCTACATCCCCAGATGAGTAAACGTGTCTGCTCTTA < 41bp 0.517121603270183 0.810641186326361 NA NA prediction 0.587039166112356 Functional Gain - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113503221 chr3:113503220 stopgain 1.000 1 20 hm7G_associated_SNPs_14369 0 0 1 0 1 ATP6V1A chr3:113503285 5'GT 113503285 Upstream 66bp 13815 chr9 108127831 108127831 1 + G T UCEC 108127832 + 108127812 108127852 41 CCTTATTCGTTACCACCTAGGTACGGTGGCAAAAGGATCTT CCTTATTCGTTACCACCTATGTACGGTGGCAAAAGGATCTT < 41bp 0.496399514131115 0.793506852606313 NA NA prediction 0.587013705212627 Functional Gain - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108127832 chr9:108127831 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_14370 0 0 0 0 2 SLC44A1 chr9:108127764 3'AG 108127764 Downstream 68bp 13816 chr9 108127831 108127831 1 + G T UCEC 108127832 + 108127812 108127852 41 CCTTATTCGTTACCACCTAGGTACGGTGGCAAAAGGATCTT CCTTATTCGTTACCACCTATGTACGGTGGCAAAAGGATCTT < 41bp 0.496399514131115 0.793506852606313 NA NA prediction 0.587013705212627 Functional Gain - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108127832 chr9:108127831 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_14370 0 0 0 0 2 SLC44A1 chr9:108127920 5'GT 108127920 Upstream 90bp 13817 chrX 9679694 9679694 1 + G T UCEC 9679695 + 9679675 9679715 41 ACTGTGGGACATAGAACGAGGCGTCTGCACCCACACGCTCA ACTGTGGGACATAGAACGATGCGTCTGCACCCACACGCTCA < 41bp 0.468377105744502 0.793503170934786 NA NA prediction 0.587006341869571 Functional Gain - TBL1X ENSG00000101849 CDS Human protein_coding chrX:9679695 chrX:9679694 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_14371 0 0 1 0 1 TBL1X chrX:9679651 3'AG 9679651 Downstream 44bp 13818 chr10 35841994 35841994 1 + G T UCEC 35841995 + 35841975 35842015 41 CAGAGATAGATATCTGTCCGGCCAACTGGAAGCGGATTGTT CAGAGATAGATATCTGTCCTGCCAACTGGAAGCGGATTGTT < 41bp 0.534469175974477 0.827965666313302 NA NA prediction 0.586992980677651 Functional Gain - CCNY ENSG00000108100 CDS Human protein_coding chr10:35841995 chr10:35841994 synonymous SNV . 0 20 hm7G_associated_SNPs_14372 0 0 1 0 1 CCNY chr10:35841947 3'AG 35841947 Downstream 48bp 13819 chr7 94049898 94049898 1 + G T LUAD 94049899 + 94049879 94049919 41 AGGAGAAAGAGGAGCCAAAGGGCCTAAGGGTGAAAACGGTG AGGAGAAAGAGGAGCCAAATGGCCTAAGGGTGAAAACGGTG < 41bp 0.555368122648674 0.848839988641745 NA NA prediction 0.586943731986141 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94049899 chr7:94049898 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_14376 0 0 0 0 1 COL1A2 chr7:94049960 5'GT 94049960 Upstream 63bp 13820 chr13 103473386 103473386 1 + G T LUAD 103473387 + 103473367 103473407 41 ACAGTCTTTTGTGTTCTCAGGTACTGCATAAGCCGACCACA ACAGTCTTTTGTGTTCTCATGTACTGCATAAGCCGACCACA < 41bp 0.50518226909981 0.798643893239939 NA NA prediction 0.586923248280258 Functional Gain - BIVM;BIVM-ERCC5 ENSG00000134897;ENSG00000270181 splicing Human other chr13:103473387 chr13:103473386 . 0.966 0 20 hm7G_associated_SNPs_14378 0 0 1 0 1 BIVM;BIVM-ERCC5 chr13:103473482 5'GT 103473482 Upstream 97bp 13821 chr4 166403411 166403411 1 + G T UCEC 166403412 + 166403392 166403432 41 AGCTTGCTCCTGAGACCAAGGCTGTCATTCATTGGATTATG AGCTTGCTCCTGAGACCAATGCTGTCATTCATTGGATTATG < 41bp 0.482308465540737 0.79345780101575 NA NA prediction 0.586915602031501 Functional Gain - CPE ENSG00000109472 CDS Human protein_coding chr4:166403412 chr4:166403411 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14379 0 0 1 0 1 CPE chr4:166403394 3'AG 166403394 Downstream 18bp 13822 chr3 128758557 128758557 1 + G T LUAD 128758558 + 128758538 128758578 41 CTGCTGTTTCCCTCCAGAGGGAAGGCCCAGCCCTGCAGCCA CTGCTGTTTCCCTCCAGAGTGAAGGCCCAGCCCTGCAGCCA < 41bp 0.491709712788889 0.793444122644653 NA NA prediction 0.586888245289305 Functional Gain - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128758558 chr3:128758557 stopgain 0.007 1 20 hm7G_associated_SNPs_14381 0 0 0 0 1 EFCC1 chr3:128758555 3'AG 128758555 Downstream 3bp 13823 chr17 8168951 8168951 1 + G T UCEC 8168952 + 8168932 8168972 41 AGACCTCAAGCATCCTGAAGGGAGAGGTATGGACATGGCCC AGACCTCAAGCATCCTGAATGGAGAGGTATGGACATGGCCC < 41bp 0.539853354328414 0.833293729372613 NA NA prediction 0.586880750088398 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8168952 chr17:8168951 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_14382 0 0 1 0 1 PFAS chr17:8168957 5'GT 8168957 Upstream 7bp 13824 chr20 3730636 3730636 1 + G T LIHC 3730637 + 3730617 3730657 41 GGGCCCTTATGGCGCGGTGGGCGTGGACCTGGCCTTCGAGC GGGCCCTTATGGCGCGGTGTGCGTGGACCTGGCCTTCGAGC < 41bp 0.463300814876583 0.793425226049808 NA NA prediction 0.586850452099615 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3730637 chr20:3730636 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_14384 0 0 0 0 1 HSPA12B chr20:3730616 3'AG 3730616 Downstream 21bp 13825 chr18 48447123 48447123 1 + G T UCEC 48447124 + 48447104 48447144 41 AATCTTATTCCTTGGAGCAGGAGAGGTAAGTTTTGAAGGCT AATCTTATTCCTTGGAGCATGAGAGGTAAGTTTTGAAGGCT < 41bp 0.498112829454043 0.793421260462082 NA NA prediction 0.586842520924165 Functional Gain - ME2 ENSG00000082212 CDS Human protein_coding chr18:48447124 chr18:48447123 stopgain 1.000 1 20 hm7G_associated_SNPs_14385 0 0 0 0 2 ME2 chr18:48447031 3'AG 48447031 Downstream 93bp 13826 chr18 48447123 48447123 1 + G T UCEC 48447124 + 48447104 48447144 41 AATCTTATTCCTTGGAGCAGGAGAGGTAAGTTTTGAAGGCT AATCTTATTCCTTGGAGCATGAGAGGTAAGTTTTGAAGGCT < 41bp 0.498112829454043 0.793421260462082 NA NA prediction 0.586842520924165 Functional Gain - ME2 ENSG00000082212 CDS Human protein_coding chr18:48447124 chr18:48447123 stopgain 1.000 1 20 hm7G_associated_SNPs_14385 0 0 0 0 2 ME2 chr18:48447128 5'GT 48447128 Upstream 6bp 13827 chr20 18505130 18505130 1 + G T UCEC 18505131 + 18505111 18505151 41 TGGTTGACACATGCCTGGAGGAAGATGACCTTCAAGCACTC TGGTTGACACATGCCTGGATGAAGATGACCTTCAAGCACTC < 41bp 0.472526220685353 0.793412832904948 NA NA prediction 0.586825665809895 Functional Gain - SEC23B;SEC23B ENSG00000101310 CDS Human protein_coding chr20:18505131 chr20:18505130 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_14386 0 0 1 0 1 SEC23B chr20:18505077 3'AG 18505077 Downstream 54bp 13828 chr11 117031909 117031909 1 + G T LUSC 117031910 + 117031890 117031930 41 TGCACTGAATTTTGGAATTGGGGGAGATACAACAAGACATG TGCACTGAATTTTGGAATTTGGGGAGATACAACAAGACATG < 41bp 0.522469085967455 0.815880237163552 NA NA prediction 0.586822302392193 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117031910 chr11:117031909 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_14388 0 0 1 2 2 PAFAH1B2 chr11:117031861 3'AG 117031861 Downstream 49bp 13829 chr11 117031909 117031909 1 + G T LUSC 117031910 + 117031890 117031930 41 TGCACTGAATTTTGGAATTGGGGGAGATACAACAAGACATG TGCACTGAATTTTGGAATTTGGGGAGATACAACAAGACATG < 41bp 0.522469085967455 0.815880237163552 NA NA prediction 0.586822302392193 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117031910 chr11:117031909 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_14388 0 0 1 2 2 PAFAH1B2 chr11:117031977 5'GT 117031977 Upstream 69bp 13830 chr2 220397059 220397059 1 + G T CHOL 220397060 + 220397040 220397080 41 ACCTACCTGCCCCAGCCCTGGGGCAACTGCCGCGCAGAGAG ACCTACCTGCCCCAGCCCTTGGGCAACTGCCGCGCAGAGAG < 41bp 0.472460682831284 0.793403976244174 NA NA prediction 0.586807952488348 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220397060 chr2:220397059 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14389 0 0 0 0 1 ASIC4 chr2:220397037 3'AG 220397037 Downstream 23bp 13831 chr5 145888772 145888772 1 + G T UCEC 145888773 + 145888753 145888793 41 ACAGCCAAAGCTGACTTCAGGACGCTTTTGAAAGAGACCAA ACAGCCAAAGCTGACTTCATGACGCTTTTGAAAGAGACCAA < 41bp 0.509089654706176 0.802487018345694 NA NA prediction 0.586794727279035 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145888773 chr5:145888772 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14390 0 0 1 0 2 TCERG1 chr5:145888708 3'AG 145888708 Downstream 65bp 13832 chr5 145888772 145888772 1 + G T UCEC 145888773 + 145888753 145888793 41 ACAGCCAAAGCTGACTTCAGGACGCTTTTGAAAGAGACCAA ACAGCCAAAGCTGACTTCATGACGCTTTTGAAAGAGACCAA < 41bp 0.509089654706176 0.802487018345694 NA NA prediction 0.586794727279035 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145888773 chr5:145888772 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14390 0 0 1 0 2 TCERG1 chr5:145888808 5'GT 145888808 Upstream 37bp 13833 chr12 57861953 57861953 1 + G T LUAD 57861954 + 57861934 57861974 41 TGGAGCCCAAGAGGGAGCGGGAAGGAGGTCCCATCAGGGAG TGGAGCCCAAGAGGGAGCGTGAAGGAGGTCCCATCAGGGAG < 41bp 0.556592777335415 0.849985621029731 NA NA prediction 0.586785687388631 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57861954 chr12:57861953 synonymous SNV . 0 20 hm7G_associated_SNPs_14391 0 0 0 0 1 GLI1 chr12:57862007 5'GT 57862007 Upstream 55bp 13834 chr20 25261746 25261746 1 + G T STAD 25261747 + 25261727 25261767 41 CGGAGATCGTGAAACAGTCGGTGTGAGTGGGGCGCTTGCCC CGGAGATCGTGAAACAGTCTGTGTGAGTGGGGCGCTTGCCC < 41bp 0.476222247197998 0.793388445947687 NA NA prediction 0.586776891895374 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25261747 chr20:25261746 synonymous SNV . 0 20 hm7G_associated_SNPs_14392 0 0 1 0 1 PYGB chr20:25261748 5'GT 25261748 Upstream 3bp 13835 chr17 5257713 5257713 1 + G T UCEC 5257714 + 5257694 5257734 41 ACAAAAAAGCAGATGTTGAGGAAGAAATAAAAATACCAGTA ACAAAAAAGCAGATGTTGATGAAGAAATAAAAATACCAGTA < 41bp 0.508833009564247 0.802211386562113 NA NA prediction 0.586756753995731 Functional Gain - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5257714 chr17:5257713 nonsynonymous SNV 0.939 0 20 hm7G_associated_SNPs_14393 0 0 0 0 2 RABEP1 chr17:5257654 3'AG 5257654 Downstream 60bp 13836 chr17 5257713 5257713 1 + G T UCEC 5257714 + 5257694 5257734 41 ACAAAAAAGCAGATGTTGAGGAAGAAATAAAAATACCAGTA ACAAAAAAGCAGATGTTGATGAAGAAATAAAAATACCAGTA < 41bp 0.508833009564247 0.802211386562113 NA NA prediction 0.586756753995731 Functional Gain - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5257714 chr17:5257713 nonsynonymous SNV 0.939 0 20 hm7G_associated_SNPs_14393 0 0 0 0 2 RABEP1 chr17:5257785 5'GT 5257785 Upstream 73bp 13837 chr10 106974326 106974326 1 + G T LUSC 106974327 + 106974307 106974347 41 CGACCGATGGGCGGCTGGTGGCAGAGCAGGGGCACAATGCA CGACCGATGGGCGGCTGGTTGCAGAGCAGGGGCACAATGCA < 41bp 0.489648017184658 0.793374811048476 NA NA prediction 0.586749622096952 Functional Gain - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106974327 chr10:106974326 synonymous SNV . 0 20 hm7G_associated_SNPs_14394 0 0 0 2 1 SORCS3 chr10:106974371 5'GT 106974371 Upstream 46bp 13838 chr11 64700350 64700350 1 + G T UCEC 64700351 + 64700331 64700371 41 CCCTCTACCAAGTCTCCAAGGAGCACTGGAACCAGTGAGTG CCCTCTACCAAGTCTCCAATGAGCACTGGAACCAGTGAGTG < 41bp 0.523293383794847 0.816664092568245 NA NA prediction 0.586741417546795 Functional Gain - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64700351 chr11:64700350 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14395 0 0 1 0 1 PPP2R5B chr11:64700364 5'GT 64700364 Upstream 15bp 13839 chr20 17208058 17208058 1 + G T UCEC 17208059 + 17208039 17208079 41 TCACGAATCATTTTCTTGTGGAGTTGCATAAAGGGGGAGAG TCACGAATCATTTTCTTGTTGAGTTGCATAAAGGGGGAGAG < 41bp 0.516770969347507 0.810132666568282 NA NA prediction 0.586723394441549 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17208059 chr20:17208058 synonymous SNV . 0 20 hm7G_associated_SNPs_14396 0 0 0 0 2 PCSK2 chr20:17207975 3'AG 17207975 Downstream 84bp 13840 chr20 17208058 17208058 1 + G T UCEC 17208059 + 17208039 17208079 41 TCACGAATCATTTTCTTGTGGAGTTGCATAAAGGGGGAGAG TCACGAATCATTTTCTTGTTGAGTTGCATAAAGGGGGAGAG < 41bp 0.516770969347507 0.810132666568282 NA NA prediction 0.586723394441549 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17208059 chr20:17208058 synonymous SNV . 0 20 hm7G_associated_SNPs_14396 0 0 0 0 2 PCSK2 chr20:17208127 5'GT 17208127 Upstream 70bp 13841 chr17 80544048 80544048 1 + G T STAD 80544049 + 80544029 80544069 41 CTCCTAAGGCAGAGGCCCAGGAGAATGGAGACCACAGGGAA CTCCTAAGGCAGAGGCCCATGAGAATGGAGACCACAGGGAA < 41bp 0.469280127355277 0.793360440321897 NA NA prediction 0.586720880643793 Functional Gain - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544049 chr17:80544048 nonsynonymous SNV 0.633 2 20 hm7G_associated_SNPs_14397 0 0 1 0 1 FOXK2 chr17:80544076 5'GT 80544076 Upstream 29bp 13842 chr10 89720726 89720726 1 + G T LUSC 89720727 + 89720707 89720747 41 CTCAGAAAAAGTAGAAAATGGAAGTCTATGTGATCAAGAAA CTCAGAAAAAGTAGAAAATTGAAGTCTATGTGATCAAGAAA < 41bp 0.523854870604599 0.817186036700192 NA NA prediction 0.586662332191187 Functional Gain - PTEN ENSG00000171862 CDS Human protein_coding chr10:89720727 chr10:89720726 stopgain 1.000 1 20 hm7G_associated_SNPs_14398 1 0 1 0 1 PTEN chr10:89720651 3'AG 89720651 Downstream 76bp 13843 chr6 125402633 125402633 1 + G T LIHC 125402634 + 125402614 125402654 41 GTTTTGGGATTGGCACTAGGGGCCATAGCGGTTGTAATCGG GTTTTGGGATTGGCACTAGTGGCCATAGCGGTTGTAATCGG < 41bp 0.530062340592265 0.823379914037845 NA NA prediction 0.586635146891159 Functional Gain - RNF217 ENSG00000146373 CDS Human protein_coding chr6:125402634 chr6:125402633 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14399 0 0 1 0 2 RNF217 chr6:125402582 3'AG 125402582 Downstream 52bp 13844 chr6 125402633 125402633 1 + G T LIHC 125402634 + 125402614 125402654 41 GTTTTGGGATTGGCACTAGGGGCCATAGCGGTTGTAATCGG GTTTTGGGATTGGCACTAGTGGCCATAGCGGTTGTAATCGG < 41bp 0.530062340592265 0.823379914037845 NA NA prediction 0.586635146891159 Functional Gain - RNF217 ENSG00000146373 CDS Human protein_coding chr6:125402634 chr6:125402633 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14399 0 0 1 0 2 RNF217 chr6:125402653 5'GT 125402653 Upstream 21bp 13845 chr11 55653631 55653631 1 + G T UCEC 55653632 + 55653612 55653652 41 AAAAAATGCAGTCTTTATGGGAAAAAGCTTGTGAAAATCTC AAAAAATGCAGTCTTTATGTGAAAAAGCTTGTGAAAATCTC < 41bp 0.496658793917336 0.793312438369707 NA NA prediction 0.586624876739415 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653632 chr11:55653631 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_14400 0 0 0 0 2 TRIM51 chr11:55653599 3'AG 55653599 Downstream 33bp 13846 chr11 55653631 55653631 1 + G T UCEC 55653632 + 55653612 55653652 41 AAAAAATGCAGTCTTTATGGGAAAAAGCTTGTGAAAATCTC AAAAAATGCAGTCTTTATGTGAAAAAGCTTGTGAAAATCTC < 41bp 0.496658793917336 0.793312438369707 NA NA prediction 0.586624876739415 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653632 chr11:55653631 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_14400 0 0 0 0 2 TRIM51 chr11:55653694 5'GT 55653694 Upstream 64bp 13847 chr8 22471761 22471761 1 + G T rs79692734 22471762 + 22471742 22471782 41 TCCAGGTCTCTTCTGAAAAGGAGGCAGCTCCAGACGCTGGT TCCAGGTCTCTTCTGAAAATGAGGCAGCTCCAGACGCTGGT < 41bp 0.466526937976809 0.79331221062851 NA NA prediction 0.58662442125702 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22471762 chr8:22471761 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_14401 0 0 1 0 1 CCAR2 chr8:22471827 5'GT 22471827 Upstream 67bp 13848 chr1 203015028 203015028 1 + G T OV 203015029 + 203015009 203015049 41 CACTGGAGAAGCGCTACCTGGCTGCTCAGCGTGAGGCAACA CACTGGAGAAGCGCTACCTTGCTGCTCAGCGTGAGGCAACA < 41bp 0.454015824225473 0.79330989345208 NA NA prediction 0.586619786904161 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203015029 chr1:203015028 synonymous SNV . 0 20 hm7G_associated_SNPs_14402 0 0 1 0 2 PPFIA4 chr1:203014969 3'AG 203014969 Downstream 60bp 13849 chr1 203015028 203015028 1 + G T OV 203015029 + 203015009 203015049 41 CACTGGAGAAGCGCTACCTGGCTGCTCAGCGTGAGGCAACA CACTGGAGAAGCGCTACCTTGCTGCTCAGCGTGAGGCAACA < 41bp 0.454015824225473 0.79330989345208 NA NA prediction 0.586619786904161 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203015029 chr1:203015028 synonymous SNV . 0 20 hm7G_associated_SNPs_14402 0 0 1 0 2 PPFIA4 chr1:203015115 5'GT 203015115 Upstream 88bp 13850 chr17 29325738 29325738 1 + G T UCEC 29325739 + 29325719 29325759 41 GCAGCCTGGAGGTGTCCAAGGATTCCCGTACAGTGACTGTG GCAGCCTGGAGGTGTCCAATGATTCCCGTACAGTGACTGTG < 41bp 0.486687636289752 0.793299225325183 NA NA prediction 0.586598450650365 Functional Gain - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29325739 chr17:29325738 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_14404 0 0 0 1 1 RNF135 chr17:29325680 3'AG 29325680 Downstream 59bp 13851 chr17 38349661 38349661 1 + G T LUAD 38349662 + 38349642 38349682 41 ATCCGCAAATACCGGAGCCGGCCCCTTTGTGAGTACCCAGG ATCCGCAAATACCGGAGCCTGCCCCTTTGTGAGTACCCAGG < 41bp 0.544139429064022 0.837435631318983 NA NA prediction 0.586592404509923 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38349662 chr17:38349661 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14406 0 0 0 0 2 RAPGEFL1 chr17:38349615 3'AG 38349615 Downstream 47bp 13852 chr17 38349661 38349661 1 + G T LUAD 38349662 + 38349642 38349682 41 ATCCGCAAATACCGGAGCCGGCCCCTTTGTGAGTACCCAGG ATCCGCAAATACCGGAGCCTGCCCCTTTGTGAGTACCCAGG < 41bp 0.544139429064022 0.837435631318983 NA NA prediction 0.586592404509923 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38349662 chr17:38349661 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14406 0 0 0 0 2 RAPGEFL1 chr17:38349669 5'GT 38349669 Upstream 9bp 13853 chr1 109707275 109707275 1 + G T SKCM 109707276 + 109707256 109707296 41 TCTCAGCCAACATGGAGCTGGATGACAGTGCTGCTGAGTCC TCTCAGCCAACATGGAGCTTGATGACAGTGCTGCTGAGTCC < 41bp 0.47360777980926 0.793295924543856 NA NA prediction 0.586591849087711 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109707276 chr1:109707275 synonymous SNV . 0 20 hm7G_associated_SNPs_14407 0 0 0 0 1 KIAA1324 chr1:109707313 5'GT 109707313 Upstream 39bp 13854 chr2 29004680 29004680 1 + G T PAAD 29004681 + 29004661 29004701 41 TGCCTATAGCAGCCATTGTGGATGAGAAGATCTTCTGTTGT TGCCTATAGCAGCCATTGTTGATGAGAAGATCTTCTGTTGT < 41bp 0.506307401497325 0.799602171642872 NA NA prediction 0.586589540291094 Functional Gain - PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29004681 chr2:29004680 synonymous SNV . 0 20 hm7G_associated_SNPs_14408 0 0 1 0 2 PPP1CB chr2:29004604 3'AG 29004604 Downstream 77bp 13855 chr2 29004680 29004680 1 + G T PAAD 29004681 + 29004661 29004701 41 TGCCTATAGCAGCCATTGTGGATGAGAAGATCTTCTGTTGT TGCCTATAGCAGCCATTGTTGATGAGAAGATCTTCTGTTGT < 41bp 0.506307401497325 0.799602171642872 NA NA prediction 0.586589540291094 Functional Gain - PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29004681 chr2:29004680 synonymous SNV . 0 20 hm7G_associated_SNPs_14408 0 0 1 0 2 PPP1CB chr2:29004708 5'GT 29004708 Upstream 29bp 13856 chr11 60230582 60230582 1 + G T LUSC 60230583 + 60230563 60230603 41 CTGTGTGGTACCCTCTCTGGGGAGGCATTATGGTGAGTAAA CTGTGTGGTACCCTCTCTGTGGAGGCATTATGGTGAGTAAA < 41bp 0.526771735834457 0.820064529634724 NA NA prediction 0.586585587600535 Functional Gain - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60230583 chr11:60230582 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14409 0 0 0 0 1 MS4A1 chr11:60230594 5'GT 60230594 Upstream 13bp 13857 chr8 24201051 24201051 1 + G T UCEC 24201052 + 24201032 24201072 41 AGCTCCAGTGTCAATGTGAGGAAGGATGGATCCCTCCCGAC AGCTCCAGTGTCAATGTGATGAAGGATGGATCCCTCCCGAC < 41bp 0.483529428500923 0.793271760394535 NA NA prediction 0.586543520789071 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24201052 chr8:24201051 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_14411 0 0 0 0 3 ADAM28 chr8:24201019 3'AG 24201019 Downstream 33bp 13858 chr8 24201051 24201051 1 + G T UCEC 24201052 + 24201032 24201072 41 AGCTCCAGTGTCAATGTGAGGAAGGATGGATCCCTCCCGAC AGCTCCAGTGTCAATGTGATGAAGGATGGATCCCTCCCGAC < 41bp 0.483529428500923 0.793271760394535 NA NA prediction 0.586543520789071 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24201052 chr8:24201051 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_14411 0 0 0 0 3 ADAM28 chr8:24201097 5'GT 24201097 Upstream 47bp 13859 chr8 24201051 24201051 1 + G T UCEC 24201052 + 24201032 24201072 41 AGCTCCAGTGTCAATGTGAGGAAGGATGGATCCCTCCCGAC AGCTCCAGTGTCAATGTGATGAAGGATGGATCCCTCCCGAC < 41bp 0.483529428500923 0.793271760394535 NA NA prediction 0.586543520789071 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24201052 chr8:24201051 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_14411 0 0 0 0 3 LOC101929294 chr8:24201101 5'GT 24201101 Upstream 51bp 13860 chr20 31680313 31680313 1 + G T PRAD 31680314 + 31680294 31680334 41 ATCGACTACCCATTGGGGTGGCCAGCTGTGTCTCCCAAGCC ATCGACTACCCATTGGGGTTGCCAGCTGTGTCTCCCAAGCC < 41bp 0.464057281668705 0.793260803027639 NA NA prediction 0.586521606055277 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31680314 chr20:31680313 nonsynonymous SNV 0.717 0 20 hm7G_associated_SNPs_14412 0 0 0 0 1 BPIFB4 chr20:31680264 3'AG 31680264 Downstream 50bp 13861 chr7 133876444 133876444 1 + G T LUAD 133876445 + 133876425 133876465 41 ACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATT ACCACCTTACTTTGGAGAATGGGATCGAGTTGATTATCATT < 41bp 0.525617442970553 0.818876864996292 NA NA prediction 0.586518844051478 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133876445 chr7:133876444 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14413 0 0 0 0 2 LRGUK chr7:133876407 3'AG 133876407 Downstream 38bp 13862 chr7 133876444 133876444 1 + G T LUAD 133876445 + 133876425 133876465 41 ACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATT ACCACCTTACTTTGGAGAATGGGATCGAGTTGATTATCATT < 41bp 0.525617442970553 0.818876864996292 NA NA prediction 0.586518844051478 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133876445 chr7:133876444 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14413 0 0 0 0 2 LRGUK chr7:133876503 5'GT 133876503 Upstream 60bp 13863 chr3 188925206 188925206 1 + G T UCEC 188925207 + 188925187 188925227 41 GGAGTTTTGAAGGATTCCAGGCTGTGTCTCTGAAGCAAGAG GGAGTTTTGAAGGATTCCATGCTGTGTCTCTGAAGCAAGAG < 41bp 0.518877909870841 0.812082640641547 NA NA prediction 0.586409461541414 Functional Gain - TPRG1 ENSG00000188001 CDS Human protein_coding chr3:188925207 chr3:188925206 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_14416 0 0 1 0 1 TPRG1 chr3:188925165 3'AG 188925165 Downstream 42bp 13864 chrX 155232673 155232673 1 + G T LUAD 155232674 + 155232654 155232694 41 TTGGGAGTCTCTGTCACAGGGGAAGGACAAGGTGAGGGCTG TTGGGAGTCTCTGTCACAGTGGAAGGACAAGGTGAGGGCTG < 41bp 0.469138359674083 0.793203217940028 NA NA prediction 0.586406435880057 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155232674 chrX:155232673 nonsynonymous SNV 0.007 2 20 hm7G_associated_SNPs_14418 0 0 0 0 1 IL9R chrX:155232684 5'GT 155232684 Upstream 12bp 13865 chr1 118481118 118481118 1 + G T SKCM 118481119 + 118481099 118481139 41 TTAGTGGGAAAGATACCATGGTGAAATGGTGGGACCTTGAT TTAGTGGGAAAGATACCATTGTGAAATGGTGGGACCTTGAT < 41bp 0.490996364578653 0.793186170094322 NA NA prediction 0.586372340188644 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118481119 chr1:118481118 nonsynonymous SNV 0.921 0 20 hm7G_associated_SNPs_14421 0 0 1 0 2 WDR3 chr1:118481103 3'AG 118481103 Downstream 16bp 13866 chr1 118481118 118481118 1 + G T SKCM 118481119 + 118481099 118481139 41 TTAGTGGGAAAGATACCATGGTGAAATGGTGGGACCTTGAT TTAGTGGGAAAGATACCATTGTGAAATGGTGGGACCTTGAT < 41bp 0.490996364578653 0.793186170094322 NA NA prediction 0.586372340188644 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118481119 chr1:118481118 nonsynonymous SNV 0.921 0 20 hm7G_associated_SNPs_14421 0 0 1 0 2 WDR3 chr1:118481181 5'GT 118481181 Upstream 64bp 13867 chr8 61773590 61773590 1 + G T UCEC 61773591 + 61773571 61773611 41 AATCTTGAAGATGGGACTAGGCTGGTGGGGGAAGATGCTCC AATCTTGAAGATGGGACTATGCTGGTGGGGGAAGATGCTCC < 41bp 0.516965415825002 0.810149868979101 NA NA prediction 0.586368906308197 Functional Gain - CHD7 ENSG00000171316 CDS Human protein_coding chr8:61773591 chr8:61773590 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14422 0 0 1 0 1 CHD7 chr8:61773684 5'GT 61773684 Upstream 95bp 13868 chr11 66807584 66807584 1 + G T HNSC 66807585 + 66807565 66807605 41 TGGCGGTGATGCAGGGCAAGGACCTCCTGGAGCGGGAGGAG TGGCGGTGATGCAGGGCAATGACCTCCTGGAGCGGGAGGAG < 41bp 0.557251959182434 0.85043438050757 NA NA prediction 0.586364842650273 Functional Gain - SYT12 ENSG00000173227 CDS Human protein_coding chr11:66807585 chr11:66807584 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_14423 0 0 0 0 1 SYT12 chr11:66807674 5'GT 66807674 Upstream 91bp 13869 chr15 91803553 91803553 1 + G T LUAD 91803554 + 91803534 91803574 41 TCCTTGGTTTCACCAGATGGGCAAACATGATGAAGCCTGGA TCCTTGGTTTCACCAGATGTGCAAACATGATGAAGCCTGGA < 41bp 0.52598122923614 0.819160988398967 NA NA prediction 0.586359518325654 Functional Gain - SV2B ENSG00000185518 CDS Human protein_coding chr15:91803554 chr15:91803553 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14424 0 0 0 0 2 SV2B chr15:91803550 3'AG 91803550 Downstream 4bp 13870 chr15 91803553 91803553 1 + G T LUAD 91803554 + 91803534 91803574 41 TCCTTGGTTTCACCAGATGGGCAAACATGATGAAGCCTGGA TCCTTGGTTTCACCAGATGTGCAAACATGATGAAGCCTGGA < 41bp 0.52598122923614 0.819160988398967 NA NA prediction 0.586359518325654 Functional Gain - SV2B ENSG00000185518 CDS Human protein_coding chr15:91803554 chr15:91803553 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14424 0 0 0 0 2 SV2B chr15:91803639 5'GT 91803639 Upstream 87bp 13871 chr7 134253052 134253052 1 + G T LUAD 134253053 + 134253033 134253073 41 CAAGAGAAGGCTGTGATGCGGGAGGACCTGTTCATCGTCAG CAAGAGAAGGCTGTGATGCTGGAGGACCTGTTCATCGTCAG < 41bp 0.482874827038749 0.793172635705595 NA NA prediction 0.58634527141119 Functional Gain - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134253053 chr7:134253052 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_14426 0 0 0 0 1 AKR1B15 chr7:134253077 5'GT 134253077 Upstream 26bp 13872 chr19 51826946 51826946 1 + G T LUAD 51826947 + 51826927 51826967 41 ACGAGCACGTGACCCGCGTGGCCTGGCTGAACCGCTCCAAC ACGAGCACGTGACCCGCGTTGCCTGGCTGAACCGCTCCAAC < 41bp 0.453745521721533 0.79316523285354 NA NA prediction 0.586330465707079 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51826947 chr19:51826946 synonymous SNV . 0 20 hm7G_associated_SNPs_14427 0 0 0 0 1 IGLON5 chr19:51826916 3'AG 51826916 Downstream 31bp 13873 chr12 77239565 77239565 1 + G T LUSC 77239566 + 77239546 77239586 41 TTTGATCATCATTGCCCATGGGTGGGTAACTGTGTAGGTAA TTTGATCATCATTGCCCATTGGTGGGTAACTGTGTAGGTAA < 41bp 0.522195669192669 0.815332032452787 NA NA prediction 0.586272726520234 Functional Gain - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77239566 chr12:77239565 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14428 0 0 1 0 2 ZDHHC17 chr12:77239489 3'AG 77239489 Downstream 77bp 13874 chr12 77239565 77239565 1 + G T LUSC 77239566 + 77239546 77239586 41 TTTGATCATCATTGCCCATGGGTGGGTAACTGTGTAGGTAA TTTGATCATCATTGCCCATTGGTGGGTAACTGTGTAGGTAA < 41bp 0.522195669192669 0.815332032452787 NA NA prediction 0.586272726520234 Functional Gain - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77239566 chr12:77239565 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14428 0 0 1 0 2 ZDHHC17 chr12:77239582 5'GT 77239582 Upstream 18bp 13875 chr2 191795225 191795225 1 + G T LGG 191795226 + 191795206 191795246 41 TAGTTGTCCCCAATGTTATGGGTATGATGTGCTGGTCTCCT TAGTTGTCCCCAATGTTATTGGTATGATGTGCTGGTCTCCT < 41bp 0.512088057041048 0.805221561859267 NA NA prediction 0.586267009636438 Functional Gain - GLS ENSG00000115419 CDS Human protein_coding chr2:191795226 chr2:191795225 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14429 0 0 1 0 2 GLS chr2:191795163 3'AG 191795163 Downstream 63bp 13876 chr2 191795225 191795225 1 + G T LGG 191795226 + 191795206 191795246 41 TAGTTGTCCCCAATGTTATGGGTATGATGTGCTGGTCTCCT TAGTTGTCCCCAATGTTATTGGTATGATGTGCTGGTCTCCT < 41bp 0.512088057041048 0.805221561859267 NA NA prediction 0.586267009636438 Functional Gain - GLS ENSG00000115419 CDS Human protein_coding chr2:191795226 chr2:191795225 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14429 0 0 1 0 2 GLS chr2:191795294 5'GT 191795294 Upstream 70bp 13877 chrX 55028832 55028832 1 + G T CESC 55028833 + 55028813 55028853 41 TCCGGGCTCTGGATAGTGAGGGCAGGGCCCTCCTCACACAG TCCGGGCTCTGGATAGTGATGGCAGGGCCCTCCTCACACAG < 41bp 0.549224517965854 0.842353712099523 NA NA prediction 0.586258388267339 Functional Gain - APEX2 ENSG00000169188 CDS Human protein_coding chrX:55028833 chrX:55028832 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14430 0 0 1 0 1 APEX2 chrX:55028864 5'GT 55028864 Upstream 33bp 13878 chr16 31382482 31382482 1 + G T PAAD 31382483 + 31382463 31382503 41 GGGGTCAAGACCTCACCCAGGATGGACTGGTGGACCTGGCT GGGGTCAAGACCTCACCCATGATGGACTGGTGGACCTGGCT < 41bp 0.454614505018772 0.793115059035165 NA NA prediction 0.58623011807033 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382483 chr16:31382482 nonsynonymous SNV 0.969 0 20 hm7G_associated_SNPs_14432 0 0 0 0 2 ITGAX chr16:31382405 3'AG 31382405 Downstream 78bp 13879 chr16 31382482 31382482 1 + G T PAAD 31382483 + 31382463 31382503 41 GGGGTCAAGACCTCACCCAGGATGGACTGGTGGACCTGGCT GGGGTCAAGACCTCACCCATGATGGACTGGTGGACCTGGCT < 41bp 0.454614505018772 0.793115059035165 NA NA prediction 0.58623011807033 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382483 chr16:31382482 nonsynonymous SNV 0.969 0 20 hm7G_associated_SNPs_14432 0 0 0 0 2 ITGAX chr16:31382535 5'GT 31382535 Upstream 54bp 13880 chr15 66604172 66604172 1 + G T UCEC 66604173 + 66604153 66604193 41 GTCAGGAGAGCCATGGGAAGGAGTACCCAGAACATCTTCCC GTCAGGAGAGCCATGGGAATGAGTACCCAGAACATCTTCCC < 41bp 0.468888840017207 0.793089728720846 NA NA prediction 0.586179457441691 Functional Gain - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66604173 chr15:66604172 nonsynonymous SNV 0.710 0 20 hm7G_associated_SNPs_14435 0 0 0 0 1 DIS3L chr15:66604238 5'GT 66604238 Upstream 67bp 13881 chr10 129846042 129846042 1 + G T LUAD 129846043 + 129846023 129846063 41 CTAAGGTTCAGGAAGCAGAGGAAAGCTGTGGTCAGCACCAG CTAAGGTTCAGGAAGCAGATGAAAGCTGTGGTCAGCACCAG < 41bp 0.544239555789258 0.837311577908174 NA NA prediction 0.586144044237832 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129846043 chr10:129846042 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14437 0 0 0 0 2 PTPRE chr10:129846028 3'AG 129846028 Downstream 15bp 13882 chr10 129846042 129846042 1 + G T LUAD 129846043 + 129846023 129846063 41 CTAAGGTTCAGGAAGCAGAGGAAAGCTGTGGTCAGCACCAG CTAAGGTTCAGGAAGCAGATGAAAGCTGTGGTCAGCACCAG < 41bp 0.544239555789258 0.837311577908174 NA NA prediction 0.586144044237832 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129846043 chr10:129846042 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14437 0 0 0 0 2 PTPRE chr10:129846101 5'GT 129846101 Upstream 60bp 13883 chr11 19192003 19192003 1 + G T UCEC 19192004 + 19191984 19192024 41 TTCAAAGAAGATGGATTATGGACTTACCTCAATCAGATTGT TTCAAAGAAGATGGATTATTGACTTACCTCAATCAGATTGT < 41bp 0.491020225809285 0.79306900708072 NA NA prediction 0.586138014161441 Functional Gain - ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19192004 chr11:19192003 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_14439 0 0 1 0 1 ZDHHC13 chr11:19191958 3'AG 19191958 Downstream 46bp 13884 chr19 6937293 6937293 1 + G T LUAD 6937294 + 6937274 6937314 41 TTGCCCAGCTCTTCATCCTGGGCTGCTCCTGGGTGCTGGGC TTGCCCAGCTCTTCATCCTTGGCTGCTCCTGGGTGCTGGGC < 41bp 0.460485181359933 0.793068070319991 NA NA prediction 0.586136140639982 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6937294 chr19:6937293 synonymous SNV . 0 20 hm7G_associated_SNPs_14440 0 0 0 0 1 ADGRE1 chr19:6937254 3'AG 6937254 Downstream 40bp 13885 chr1 12067213 12067213 1 + G T COAD 12067214 + 12067194 12067234 41 ACCACCAAGGCCAAGGAGAGGGCCTTCAAGCGCCAGTTTGT ACCACCAAGGCCAAGGAGATGGCCTTCAAGCGCCAGTTTGT < 41bp 0.544601467457618 0.837638468577689 NA NA prediction 0.586074002240142 Functional Gain - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12067214 chr1:12067213 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14444 0 0 1 0 1 MFN2 chr1:12067306 5'GT 12067306 Upstream 94bp 13886 chrX 110971471 110971471 1 + G T LIHC 110971472 + 110971452 110971492 41 GGATACTGTGTTGGAAGGCGGGGACATAGCTCAGGCAAACA GGATACTGTGTTGGAAGGCTGGGACATAGCTCAGGCAAACA < 41bp 0.506620284434996 0.799642923666277 NA NA prediction 0.586045278462561 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110971472 chrX:110971471 nonsynonymous SNV 0.306 1 20 hm7G_associated_SNPs_14446 0 0 1 0 2 ALG13 chrX:110971413 3'AG 110971413 Downstream 59bp 13887 chrX 110971471 110971471 1 + G T LIHC 110971472 + 110971452 110971492 41 GGATACTGTGTTGGAAGGCGGGGACATAGCTCAGGCAAACA GGATACTGTGTTGGAAGGCTGGGACATAGCTCAGGCAAACA < 41bp 0.506620284434996 0.799642923666277 NA NA prediction 0.586045278462561 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110971472 chrX:110971471 nonsynonymous SNV 0.306 1 20 hm7G_associated_SNPs_14446 0 0 1 0 2 ALG13 chrX:110971533 5'GT 110971533 Upstream 63bp 13888 chr16 67683455 67683455 1 + G T LUAD 67683456 + 67683436 67683476 41 GACCGCGCTGGATATCAGCGGCAACGCCATGGGGGACGCGG GACCGCGCTGGATATCAGCTGCAACGCCATGGGGGACGCGG < 41bp 0.558321999442217 0.851344402307864 NA NA prediction 0.586044805731293 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67683456 chr16:67683455 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14447 0 0 0 0 1 CARMIL2 chr16:67683522 5'GT 67683522 Upstream 68bp 13889 chr1 19653061 19653061 1 + G T LUAD 19653062 + 19653042 19653082 41 AGTCATTGGCTTCGTCATCGGCTCCATCTCCAGCGTGTTGT AGTCATTGGCTTCGTCATCTGCTCCATCTCCAGCGTGTTGT < 41bp 0.542894811573616 0.835903609659906 NA NA prediction 0.586017596172581 Functional Gain - PQLC2 ENSG00000040487 CDS Human protein_coding chr1:19653062 chr1:19653061 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_14449 0 0 0 0 2 PQLC2 chr1:19653025 3'AG 19653025 Downstream 37bp 13890 chr1 19653061 19653061 1 + G T LUAD 19653062 + 19653042 19653082 41 AGTCATTGGCTTCGTCATCGGCTCCATCTCCAGCGTGTTGT AGTCATTGGCTTCGTCATCTGCTCCATCTCCAGCGTGTTGT < 41bp 0.542894811573616 0.835903609659906 NA NA prediction 0.586017596172581 Functional Gain - PQLC2 ENSG00000040487 CDS Human protein_coding chr1:19653062 chr1:19653061 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_14449 0 0 0 0 2 PQLC2 chr1:19653117 5'GT 19653117 Upstream 57bp 13891 chr17 58235707 58235707 1 + G T OV 58235708 + 58235688 58235728 41 CCCAAGGAGGAGAAACTGAGGCACTACTTCCGCTACCTGGG CCCAAGGAGGAGAAACTGATGCACTACTTCCGCTACCTGGG < 41bp 0.553171165323095 0.846178695653163 NA NA prediction 0.586015060660136 Functional Gain - CA4 ENSG00000167434 CDS Human protein_coding chr17:58235708 chr17:58235707 nonsynonymous SNV 0.050 0 20 hm7G_associated_SNPs_14450 0 0 0 0 1 CA4 chr17:58235644 3'AG 58235644 Downstream 64bp 13892 chr12 120428058 120428058 1 + G T COAD 120428059 + 120428039 120428079 41 AGGAACCAGGACATGAGCCGGCAGTACGAGCAGATGCATAA AGGAACCAGGACATGAGCCTGCAGTACGAGCAGATGCATAA < 41bp 0.535852589007989 0.828821805683131 NA NA prediction 0.585938433350283 Functional Gain - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120428059 chr12:120428058 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14453 0 0 1 1 1 BICDL1 chr12:120428101 5'GT 120428101 Upstream 44bp 13893 chr1 197390963 197390963 1 + G T LUSC 197390964 + 197390944 197390984 41 ATCATTAAATGTCAAGGCAGGCTGTGTGAGAAAGGATTGGT ATCATTAAATGTCAAGGCATGCTGTGTGAGAAAGGATTGGT < 41bp 0.507888494155093 0.80083358079549 NA NA prediction 0.585890173280795 Functional Gain - CRB1 ENSG00000134376 CDS Human protein_coding chr1:197390964 chr1:197390963 nonsynonymous SNV 0.143 4 20 hm7G_associated_SNPs_14455 0 0 0 3 1 CRB1 chr1:197390880 3'AG 197390880 Downstream 84bp 13894 chr1 203696564 203696564 1 + G T COAD 203696565 + 203696545 203696585 41 GATCCCTGAAGTTCCTGAAGGAGGCTGGGCATGGCACCACC GATCCCTGAAGTTCCTGAATGAGGCTGGGCATGGCACCACC < 41bp 0.476844474902727 0.792939117481686 NA NA prediction 0.585878234963373 Functional Gain - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203696565 chr1:203696564 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14456 0 0 1 0 1 ATP2B4 chr1:203696523 3'AG 203696523 Downstream 42bp 13895 chr2 64114548 64114548 1 + G T LGG 64114549 + 64114529 64114569 41 CTTACAGACTTTGGATGGAGGCCTGAATGTCATTCAATTAG CTTACAGACTTTGGATGGATGCCTGAATGTCATTCAATTAG < 41bp 0.497026237400061 0.792935602859563 NA NA prediction 0.585871205719125 Functional Gain - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64114549 chr2:64114548 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14458 0 0 1 0 1 UGP2 chr2:64114536 3'AG 64114536 Downstream 13bp 13896 chr6 149730765 149730765 1 + G T UCEC 149730766 + 149730746 149730786 41 AAGACACAGAAGATGATGAGGGAGCTCAGTGGAATTGTACC AAGACACAGAAGATGATGATGGAGCTCAGTGGAATTGTACC < 41bp 0.504116472680216 0.797034026048922 NA NA prediction 0.585835106737413 Functional Gain - TAB2 ENSG00000055208 CDS Human protein_coding chr6:149730766 chr6:149730765 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_14461 0 0 1 1 1 TAB2 chr6:149730713 3'AG 149730713 Downstream 53bp 13897 chr5 75621196 75621196 1 + G T UCEC 75621197 + 75621177 75621217 41 TTTCCTTTGCAGGGCAACAGGCTTTGGCTTCTTAAATGCGC TTTCCTTTGCAGGGCAACATGCTTTGGCTTCTTAAATGCGC < 41bp 0.503203003635933 0.796111446862804 NA NA prediction 0.585816886453742 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75621197 chr5:75621196 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14463 0 0 0 0 1 SV2C chr5:75621189 3'AG 75621189 Downstream 8bp 13898 chr12 3701483 3701483 1 + G T LUAD 3701484 + 3701464 3701504 41 GAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCCAA GAGGGGGGAGGAAATCTACTGGACCATATCCATGAAGCCAA < 41bp 0.47343653629818 0.792907900325215 NA NA prediction 0.585815800650429 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701484 chr12:3701483 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_14464 0 0 0 2 2 PRMT8 chr12:3701397 3'AG 3701397 Downstream 87bp 13899 chr12 3701483 3701483 1 + G T LUAD 3701484 + 3701464 3701504 41 GAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCCAA GAGGGGGGAGGAAATCTACTGGACCATATCCATGAAGCCAA < 41bp 0.47343653629818 0.792907900325215 NA NA prediction 0.585815800650429 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701484 chr12:3701483 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_14464 0 0 0 2 2 PRMT8 chr12:3701518 5'GT 3701518 Upstream 36bp 13900 chr11 4103493 4103493 1 + G T LUAD 4103494 + 4103474 4103514 41 CCAGAGGCCCTTCAGAAGTGGCTGCAGCTGACACATGAGGT CCAGAGGCCCTTCAGAAGTTGCTGCAGCTGACACATGAGGT < 41bp 0.547365519987892 0.840271237874817 NA NA prediction 0.58581143577385 Functional Gain - STIM1 ENSG00000167323 CDS Human protein_coding chr11:4103494 chr11:4103493 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14465 0 0 1 0 2 STIM1 chr11:4103414 3'AG 4103414 Downstream 80bp 13901 chr11 4103493 4103493 1 + G T LUAD 4103494 + 4103474 4103514 41 CCAGAGGCCCTTCAGAAGTGGCTGCAGCTGACACATGAGGT CCAGAGGCCCTTCAGAAGTTGCTGCAGCTGACACATGAGGT < 41bp 0.547365519987892 0.840271237874817 NA NA prediction 0.58581143577385 Functional Gain - STIM1 ENSG00000167323 CDS Human protein_coding chr11:4103494 chr11:4103493 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14465 0 0 1 0 2 STIM1 chr11:4103581 5'GT 4103581 Upstream 89bp 13902 chr2 220474242 220474242 1 + G T UCEC 220474243 + 220474223 220474263 41 GACAGTGAGGAAGGCTGGAGGCCTCTGTTCCAAAAGACAGG GACAGTGAGGAAGGCTGGATGCCTCTGTTCCAAAAGACAGG < 41bp 0.468430499225475 0.792896549903558 NA NA prediction 0.585793099807115 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220474243 chr2:220474242 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_14466 0 0 1 0 1 STK11IP chr2:220474262 5'GT 220474262 Upstream 21bp 13903 chr2 210882204 210882204 1 + G T PAAD 210882205 + 210882185 210882225 41 GTATATATCTAGGTTCACTGGTTGAGGACCCAGTTCCCATC GTATATATCTAGGTTCACTTGTTGAGGACCCAGTTCCCATC < 41bp 0.498582829823747 0.792880194728994 NA NA prediction 0.585760389457988 Functional Gain - RPE ENSG00000197713 CDS Human protein_coding chr2:210882205 chr2:210882204 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14467 0 0 1 0 2 RPE chr2:210882197 3'AG 210882197 Downstream 8bp 13904 chr2 210882204 210882204 1 + G T PAAD 210882205 + 210882185 210882225 41 GTATATATCTAGGTTCACTGGTTGAGGACCCAGTTCCCATC GTATATATCTAGGTTCACTTGTTGAGGACCCAGTTCCCATC < 41bp 0.498582829823747 0.792880194728994 NA NA prediction 0.585760389457988 Functional Gain - RPE ENSG00000197713 CDS Human protein_coding chr2:210882205 chr2:210882204 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14467 0 0 1 0 2 RPE chr2:210882283 5'GT 210882283 Upstream 80bp 13905 chr16 816697 816697 1 + G T LUAD 816698 + 816678 816718 41 TGATCGACCGCTTTGTGAAGGGAAGGGGCCAGCTAGACAAA TGATCGACCGCTTTGTGAATGGAAGGGGCCAGCTAGACAAA < 41bp 0.540395002164726 0.833251203528902 NA NA prediction 0.585712402728351 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816698 chr16:816697 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_14469 0 0 0 0 2 MSLN chr16:816644 3'AG 816644 Downstream 54bp 13906 chr16 816697 816697 1 + G T LUAD 816698 + 816678 816718 41 TGATCGACCGCTTTGTGAAGGGAAGGGGCCAGCTAGACAAA TGATCGACCGCTTTGTGAATGGAAGGGGCCAGCTAGACAAA < 41bp 0.540395002164726 0.833251203528902 NA NA prediction 0.585712402728351 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:816698 chr16:816697 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_14469 0 0 0 0 2 MSLN chr16:816668 3'AG 816668 Downstream 30bp 13907 chr18 72183560 72183560 1 + G T LUAD 72183561 + 72183541 72183581 41 GCCAAGACCGTGATTCCCAGGAAGGTGGTTGGCAAGTTCTC GCCAAGACCGTGATTCCCATGAAGGTGGTTGGCAAGTTCTC < 41bp 0.553679348534513 0.846534549940696 NA NA prediction 0.585710402812365 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72183561 chr18:72183560 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_14470 0 0 1 0 1 CNDP2 chr18:72183463 3'AG 72183463 Downstream 98bp 13908 chr15 89719117 89719117 1 + G T STAD 89719118 + 89719098 89719138 41 GACCCAGCTGGTCGTCGTGGGCTTCAGCCTGGGTGGTAACA GACCCAGCTGGTCGTCGTGTGCTTCAGCCTGGGTGGTAACA < 41bp 0.549092497593821 0.841940753592963 NA NA prediction 0.585696511998284 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89719118 chr15:89719117 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14473 0 0 1 0 1 ABHD2 chr15:89719043 3'AG 89719043 Downstream 75bp 13909 chr1 53547716 53547716 1 + G T LUAD 53547717 + 53547697 53547737 41 GGAGGCTGAAGCACCTGCAGGTCTTGGACATTGAAGGCAAC GGAGGCTGAAGCACCTGCATGTCTTGGACATTGAAGGCAAC < 41bp 0.476547956046008 0.792845154624556 NA NA prediction 0.585690309249111 Functional Gain - PODN ENSG00000174348 CDS Human protein_coding chr1:53547717 chr1:53547716 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14474 0 0 0 0 1 PODN chr1:53547653 3'AG 53547653 Downstream 64bp 13910 chr1 222825631 222825631 1 + G T LIHC 222825632 + 222825612 222825652 41 GTGAAGTCTGAATGCCATCGGGTTCAAGAAGAAAATGCTAG GTGAAGTCTGAATGCCATCTGGTTCAAGAAGAAAATGCTAG < 41bp 0.515417420996014 0.808232313264288 NA NA prediction 0.585629784536548 Functional Gain - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222825632 chr1:222825631 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_14476 0 0 1 0 2 MIA3 chr1:222825570 3'AG 222825570 Downstream 62bp 13911 chr1 222825631 222825631 1 + G T LIHC 222825632 + 222825612 222825652 41 GTGAAGTCTGAATGCCATCGGGTTCAAGAAGAAAATGCTAG GTGAAGTCTGAATGCCATCTGGTTCAAGAAGAAAATGCTAG < 41bp 0.515417420996014 0.808232313264288 NA NA prediction 0.585629784536548 Functional Gain - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222825632 chr1:222825631 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_14476 0 0 1 0 2 MIA3 chr1:222825674 5'GT 222825674 Upstream 44bp 13912 chr1 36637115 36637115 1 + G T LIHC 36637116 + 36637096 36637136 41 CTTGTTCCCTCTGCTCAGAGGTGAAGAAGGCAGGAGAGAGA CTTGTTCCCTCTGCTCAGATGTGAAGAAGGCAGGAGAGAGA < 41bp 0.481335913726027 0.7928121620454 NA NA prediction 0.5856243240908 Functional Gain - MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36637116 chr1:36637115 nonsynonymous SNV 0.484 0 20 hm7G_associated_SNPs_14477 0 0 0 0 2 MAP7D1 chr1:36637114 3'AG 36637114 Downstream 2bp 13913 chr1 36637115 36637115 1 + G T LIHC 36637116 + 36637096 36637136 41 CTTGTTCCCTCTGCTCAGAGGTGAAGAAGGCAGGAGAGAGA CTTGTTCCCTCTGCTCAGATGTGAAGAAGGCAGGAGAGAGA < 41bp 0.481335913726027 0.7928121620454 NA NA prediction 0.5856243240908 Functional Gain - MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36637116 chr1:36637115 nonsynonymous SNV 0.484 0 20 hm7G_associated_SNPs_14477 0 0 0 0 2 MAP7D1 chr1:36637182 5'GT 36637182 Upstream 68bp 13914 chr12 7295497 7295497 1 + G T UCEC 7295498 + 7295478 7295518 41 GATCCACCACTACTTCCATGGCTACCTGGCTGGTTTCAGCG GATCCACCACTACTTCCATTGCTACCTGGCTGGTTTCAGCG < 41bp 0.450699104614823 0.792811675177257 NA NA prediction 0.585623350354514 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7295498 chr12:7295497 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_14478 0 0 1 0 1 CLSTN3 chr12:7295465 3'AG 7295465 Downstream 33bp 13915 chr19 1364528 1364528 1 + G T COAD 1364529 + 1364509 1364549 41 ACCACGTTCGTTTGAAGTAGGAATGCTAGTCTGGCATAAAC ACCACGTTCGTTTGAAGTATGAATGCTAGTCTGGCATAAAC < 41bp 0.480346380469766 0.79279224782407 NA NA prediction 0.585584495648141 Functional Gain - MUM1 ENSG00000160953 CDS Human protein_coding chr19:1364529 chr19:1364528 stopgain 0.994 1 20 hm7G_associated_SNPs_14482 0 0 1 0 2 MUM1 chr19:1364508 3'AG 1364508 Downstream 21bp 13916 chr19 1364528 1364528 1 + G T COAD 1364529 + 1364509 1364549 41 ACCACGTTCGTTTGAAGTAGGAATGCTAGTCTGGCATAAAC ACCACGTTCGTTTGAAGTATGAATGCTAGTCTGGCATAAAC < 41bp 0.480346380469766 0.79279224782407 NA NA prediction 0.585584495648141 Functional Gain - MUM1 ENSG00000160953 CDS Human protein_coding chr19:1364529 chr19:1364528 stopgain 0.994 1 20 hm7G_associated_SNPs_14482 0 0 1 0 2 MUM1 chr19:1364578 5'GT 1364578 Upstream 51bp 13917 chr2 112942840 112942840 1 + G T LUAD 112942841 + 112942821 112942861 41 GACCACATGCATCAACACCGGTGGAAGCTTCCAGTGTGTCA GACCACATGCATCAACACCTGTGGAAGCTTCCAGTGTGTCA < 41bp 0.478867958208066 0.79278431714207 NA NA prediction 0.58556863428414 Functional Gain - FBLN7 ENSG00000144152 CDS Human protein_coding chr2:112942841 chr2:112942840 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14483 0 0 1 0 2 FBLN7 chr2:112942778 3'AG 112942778 Downstream 63bp 13918 chr2 112942840 112942840 1 + G T LUAD 112942841 + 112942821 112942861 41 GACCACATGCATCAACACCGGTGGAAGCTTCCAGTGTGTCA GACCACATGCATCAACACCTGTGGAAGCTTCCAGTGTGTCA < 41bp 0.478867958208066 0.79278431714207 NA NA prediction 0.58556863428414 Functional Gain - FBLN7 ENSG00000144152 CDS Human protein_coding chr2:112942841 chr2:112942840 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14483 0 0 1 0 2 FBLN7 chr2:112942916 5'GT 112942916 Upstream 77bp 13919 chr14 67843242 67843242 1 + G T UCEC 67843243 + 67843223 67843263 41 TATTCCAGAGGACTGCCTGGGTCTTTGATGACAAGTACAAG TATTCCAGAGGACTGCCTGTGTCTTTGATGACAAGTACAAG < 41bp 0.517207566218054 0.80998113026821 NA NA prediction 0.585547128100313 Functional Gain - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67843243 chr14:67843242 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14484 0 0 1 0 2 EIF2S1 chr14:67843156 3'AG 67843156 Downstream 87bp 13920 chr14 67843242 67843242 1 + G T UCEC 67843243 + 67843223 67843263 41 TATTCCAGAGGACTGCCTGGGTCTTTGATGACAAGTACAAG TATTCCAGAGGACTGCCTGTGTCTTTGATGACAAGTACAAG < 41bp 0.517207566218054 0.80998113026821 NA NA prediction 0.585547128100313 Functional Gain - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67843243 chr14:67843242 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14484 0 0 1 0 2 EIF2S1 chr14:67843307 5'GT 67843307 Upstream 66bp 13921 chr6 41558981 41558981 1 + G T UCEC 41558982 + 41558962 41559002 41 ATCCTGGAAACCCCTGACAGGCAGCTGACCCTGAATGAGAT ATCCTGGAAACCCCTGACATGCAGCTGACCCTGAATGAGAT < 41bp 0.544906852473526 0.837670445725799 NA NA prediction 0.585527186504545 Functional Gain - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41558982 chr6:41558981 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_14485 0 0 1 0 2 FOXP4 chr6:41558959 3'AG 41558959 Downstream 23bp 13922 chr6 41558981 41558981 1 + G T UCEC 41558982 + 41558962 41559002 41 ATCCTGGAAACCCCTGACAGGCAGCTGACCCTGAATGAGAT ATCCTGGAAACCCCTGACATGCAGCTGACCCTGAATGAGAT < 41bp 0.544906852473526 0.837670445725799 NA NA prediction 0.585527186504545 Functional Gain - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41558982 chr6:41558981 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_14485 0 0 1 0 2 FOXP4 chr6:41559060 5'GT 41559060 Upstream 80bp 13923 chr17 38445693 38445693 1 + G T PAAD 38445694 + 38445674 38445714 41 TGCCTCAAACCCGATCCCAGGCACAGGCTACAATCAGTTTT TGCCTCAAACCCGATCCCATGCACAGGCTACAATCAGTTTT < 41bp 0.523003106616822 0.815758122298875 NA NA prediction 0.585510031364105 Functional Gain - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38445694 chr17:38445693 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_14487 0 0 1 0 1 CDC6 chr17:38445660 3'AG 38445660 Downstream 34bp 13924 chr22 41616870 41616870 1 + G T PRAD 41616871 + 41616851 41616891 41 AAGATCCTAGTGCCCCCACGGAGTGAGTTGATGAGAACATT AAGATCCTAGTGCCCCCACTGAGTGAGTTGATGAGAACATT < 41bp 0.475481224353171 0.792751537972901 NA NA prediction 0.585503075945802 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41616871 chr22:41616870 nonsynonymous SNV 0.864 2 20 hm7G_associated_SNPs_14489 0 0 0 0 1 L3MBTL2 chr22:41616872 5'GT 41616872 Upstream 3bp 13925 chr1 17934400 17934400 1 + G T STAD 17934401 + 17934381 17934421 41 AGTTCGAGAGCTACAGCGAGGACTCGGGGGAGGAGGCCAAG AGTTCGAGAGCTACAGCGATGACTCGGGGGAGGAGGCCAAG < 41bp 0.488640963597159 0.792746255477552 NA NA prediction 0.585492510955105 Functional Gain - ARHGEF10L ENSG00000074964 CDS Human protein_coding chr1:17934401 chr1:17934400 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_14490 0 0 1 0 1 ARHGEF10L chr1:17934472 5'GT 17934472 Upstream 73bp 13926 chr16 67318231 67318231 1 + G T LUSC 67318232 + 67318212 67318252 41 CGCTGACTGGCTGGGAGGCGGCTGAACTGGACCCCCCTGGG CGCTGACTGGCTGGGAGGCTGCTGAACTGGACCCCCCTGGG < 41bp 0.553264989741538 0.846008663260435 NA NA prediction 0.585487347037795 Functional Gain - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67318232 chr16:67318231 synonymous SNV . 0 20 hm7G_associated_SNPs_14491 0 0 1 0 1 PLEKHG4 chr16:67318178 3'AG 67318178 Downstream 54bp 13927 chr11 65298168 65298168 1 + G T UCEC 65298169 + 65298149 65298189 41 GCCTGGACGCATTCCCTGAGGATTTCTGTCGGCACAAGGTG GCCTGGACGCATTCCCTGATGATTTCTGTCGGCACAAGGTG < 41bp 0.454439683966922 0.792739697911592 NA NA prediction 0.585479395823184 Functional Gain - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65298169 chr11:65298168 nonsynonymous SNV 0.958 1 20 hm7G_associated_SNPs_14493 0 0 1 0 1 SCYL1 chr11:65298258 5'GT 65298258 Upstream 91bp 13928 chr7 129760629 129760629 1 + G T LUSC 129760630 + 129760610 129760650 41 TGTTAGTATTTGGAGGTACGGGCATCCCATTTGGAGAGAGC TGTTAGTATTTGGAGGTACTGGCATCCCATTTGGAGAGAGC < 41bp 0.472387588175694 0.792728316056762 NA NA prediction 0.585456632113523 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129760630 chr7:129760629 synonymous SNV . 0 20 hm7G_associated_SNPs_14494 0 0 1 0 1 KLHDC10 chr7:129760589 3'AG 129760589 Downstream 41bp 13929 chr3 15685917 15685917 1 + G T MESO 15685918 + 15685898 15685938 41 TGTCATAGCAGTGACCCAAGGTGCCCAAAAGATGGGAGATA TGTCATAGCAGTGACCCAATGTGCCCAAAAGATGGGAGATA < 41bp 0.500702027121714 0.793426102142456 NA NA prediction 0.585448150041485 Functional Gain - BTD ENSG00000169814 CDS Human protein_coding chr3:15685918 chr3:15685917 nonsynonymous SNV 0.011 1 20 hm7G_associated_SNPs_14496 0 0 1 0 1 BTD chr3:15685823 3'AG 15685823 Downstream 95bp 13930 chr2 36771577 36771577 1 + G T STAD 36771578 + 36771558 36771598 41 AGACAAACCATCGAGGAGAGGTTGACCTGGAGGTTCCCCTG AGACAAACCATCGAGGAGATGTTGACCTGGAGGTTCCCCTG < 41bp 0.518045936625728 0.810754060796687 NA NA prediction 0.585416248341917 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36771578 chr2:36771577 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_14497 0 0 1 0 2 CRIM1 chr2:36771519 3'AG 36771519 Downstream 59bp 13931 chr2 36771577 36771577 1 + G T STAD 36771578 + 36771558 36771598 41 AGACAAACCATCGAGGAGAGGTTGACCTGGAGGTTCCCCTG AGACAAACCATCGAGGAGATGTTGACCTGGAGGTTCCCCTG < 41bp 0.518045936625728 0.810754060796687 NA NA prediction 0.585416248341917 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36771578 chr2:36771577 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_14497 0 0 1 0 2 CRIM1 chr2:36771641 5'GT 36771641 Upstream 65bp 13932 chr15 58004253 58004253 1 + G T HNSC 58004254 + 58004234 58004274 41 CCTATTTCCTCAGAAGAGCGGCGGCGCAGGGATAAGCAGCA CCTATTTCCTCAGAAGAGCTGCGGCGCAGGGATAAGCAGCA < 41bp 0.520838082816203 0.813545608349142 NA NA prediction 0.585415051065878 Functional Gain - GCOM1;POLR2M ENSG00000137878;ENSG00000255529 CDS Human other chr15:58004254 chr15:58004253 nonsynonymous SNV 0.979 2 20 hm7G_associated_SNPs_14498 0 0 1 0 1 GCOM1;POLR2M chr15:58004182 3'AG 58004182 Downstream 72bp 13933 chr1 109806363 109806363 1 + G T UCEC 109806364 + 109806344 109806384 41 CCGACGGTGTCCTGCTGCAGGCCATCACCAGGGGGCGCAGC CCGACGGTGTCCTGCTGCATGCCATCACCAGGGGGCGCAGC < 41bp 0.545400058682491 0.83810182696764 NA NA prediction 0.585403536570299 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806364 chr1:109806363 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_14499 0 0 1 0 1 CELSR2 chr1:109806399 5'GT 109806399 Upstream 37bp 13934 chr10 115528619 115528619 1 + G T UCEC 115528620 + 115528600 115528640 41 TCATGTCATCATTTCGCCAGGATATAAAAGCAACACAGCAG TCATGTCATCATTTCGCCATGATATAAAAGCAACACAGCAG < 41bp 0.486561841083128 0.79270044940489 NA NA prediction 0.585400898809781 Functional Gain - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115528620 chr10:115528619 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_14500 0 0 0 0 2 PLEKHS1 chr10:115528574 3'AG 115528574 Downstream 46bp 13935 chr10 115528619 115528619 1 + G T UCEC 115528620 + 115528600 115528640 41 TCATGTCATCATTTCGCCAGGATATAAAAGCAACACAGCAG TCATGTCATCATTTCGCCATGATATAAAAGCAACACAGCAG < 41bp 0.486561841083128 0.79270044940489 NA NA prediction 0.585400898809781 Functional Gain - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115528620 chr10:115528619 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_14500 0 0 0 0 2 PLEKHS1 chr10:115528649 5'GT 115528649 Upstream 31bp 13936 chr12 54914523 54914523 1 + G T UCEC 54914524 + 54914504 54914544 41 TGTTTGCCATGACCTTGGAGGAATCTGCCATGTTGCGTTAT TGTTTGCCATGACCTTGGATGAATCTGCCATGTTGCGTTAT < 41bp 0.541887548094635 0.834582429302745 NA NA prediction 0.585389762416221 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54914524 chr12:54914523 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_14501 0 0 0 0 2 NCKAP1L chr12:54914478 3'AG 54914478 Downstream 46bp 13937 chr12 54914523 54914523 1 + G T UCEC 54914524 + 54914504 54914544 41 TGTTTGCCATGACCTTGGAGGAATCTGCCATGTTGCGTTAT TGTTTGCCATGACCTTGGATGAATCTGCCATGTTGCGTTAT < 41bp 0.541887548094635 0.834582429302745 NA NA prediction 0.585389762416221 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54914524 chr12:54914523 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_14501 0 0 0 0 2 NCKAP1L chr12:54914610 5'GT 54914610 Upstream 88bp 13938 chr11 557989 557989 1 - C A rs7129811 557988 - 557968 558008 41 AGACCACCCGCACGCTCCAGGAGATGGAGGCCGAGCTGCAG AGACCACCCGCACGCTCCATGAGATGGAGGCCGAGCTGCAG < 41bp 0.550711899633323 0.843396551728832 NA NA prediction 0.585369304191018 Functional Gain - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:557988 chr11:557989 nonsynonymous SNV 0.012 2 20 hm7G_associated_SNPs_14503 0 0 0 0 1 LMNTD2 chr11:558039 3'AG 558039 Downstream 51bp 13939 chr11 85593630 85593630 1 + G T UCEC 85593631 + 85593611 85593651 41 TGAGTGAAGAGAAGGCAGAGGGATTGCCAGTTGTAACAAGA TGAGTGAAGAGAAGGCAGATGGATTGCCAGTTGTAACAAGA < 41bp 0.480177362352481 0.792681715551877 NA NA prediction 0.585363431103754 Functional Gain - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85593631 chr11:85593630 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_14504 0 0 0 0 2 CCDC83 chr11:85593556 3'AG 85593556 Downstream 75bp 13940 chr11 85593630 85593630 1 + G T UCEC 85593631 + 85593611 85593651 41 TGAGTGAAGAGAAGGCAGAGGGATTGCCAGTTGTAACAAGA TGAGTGAAGAGAAGGCAGATGGATTGCCAGTTGTAACAAGA < 41bp 0.480177362352481 0.792681715551877 NA NA prediction 0.585363431103754 Functional Gain - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85593631 chr11:85593630 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_14504 0 0 0 0 2 CCDC83 chr11:85593718 5'GT 85593718 Upstream 89bp 13941 chr10 46998904 46998904 1 + G T LUSC 46998905 + 46998885 46998925 41 GCTCCAGCCGCCCCGAGCCGGGTCCCTGGGCACCCCTGAGC GCTCCAGCCGCCCCGAGCCTGGTCCCTGGGCACCCCTGAGC < 41bp 0.537990517813667 0.830667849177627 NA NA prediction 0.585354662727922 Functional Gain - GPRIN2 ENSG00000204175 CDS Human protein_coding chr10:46998905 chr10:46998904 synonymous SNV . 0 20 hm7G_associated_SNPs_14505 0 0 0 0 1 GPRIN2 chr10:46998875 3'AG 46998875 Downstream 30bp 13942 chr6 167585706 167585706 1 + G T HNSC 167585707 + 167585687 167585727 41 GACCCGTGCCCGGGAGCTGGGGCTGCCATGGAGAAGACACC GACCCGTGCCCGGGAGCTGTGGCTGCCATGGAGAAGACACC < 41bp 0.473988008921826 0.79265193707881 NA NA prediction 0.585303874157621 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585707 chr6:167585706 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_14507 0 0 0 0 2 TCP10L2 chr6:167585632 3'AG 167585632 Downstream 75bp 13943 chr6 167585706 167585706 1 + G T HNSC 167585707 + 167585687 167585727 41 GACCCGTGCCCGGGAGCTGGGGCTGCCATGGAGAAGACACC GACCCGTGCCCGGGAGCTGTGGCTGCCATGGAGAAGACACC < 41bp 0.473988008921826 0.79265193707881 NA NA prediction 0.585303874157621 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585707 chr6:167585706 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_14507 0 0 0 0 2 TCP10L2 chr6:167585776 5'GT 167585776 Upstream 71bp 13944 chr21 47538546 47538546 1 + G T PAAD 47538547 + 47538527 47538567 41 GGGGGACCCTGGCCGCCCAGGACGCAGAGGGCCCCCGGGAG GGGGGACCCTGGCCGCCCATGACGCAGAGGGCCCCCGGGAG < 41bp 0.455528397528901 0.792618858745277 NA NA prediction 0.585237717490554 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47538547 chr21:47538546 stopgain 0.999 1 20 hm7G_associated_SNPs_14509 0 0 0 0 2 COL6A2 chr21:47538528 3'AG 47538528 Downstream 19bp 13945 chr21 47538546 47538546 1 + G T PAAD 47538547 + 47538527 47538567 41 GGGGGACCCTGGCCGCCCAGGACGCAGAGGGCCCCCGGGAG GGGGGACCCTGGCCGCCCATGACGCAGAGGGCCCCCGGGAG < 41bp 0.455528397528901 0.792618858745277 NA NA prediction 0.585237717490554 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47538547 chr21:47538546 stopgain 0.999 1 20 hm7G_associated_SNPs_14509 0 0 0 0 2 COL6A2 chr21:47538590 5'GT 47538590 Upstream 45bp 13946 chr16 1394978 1394978 1 + G T LUAD 1394979 + 1394959 1394999 41 GTCCCGGACAGGTGGCTGAGGAGGCGTGGGTGCTGACGGAG GTCCCGGACAGGTGGCTGATGAGGCGTGGGTGCTGACGGAG < 41bp 0.464466282094413 0.792614999967289 NA NA prediction 0.585229999934578 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394979 chr16:1394978 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_14510 0 0 1 0 1 BAIAP3 chr16:1394970 3'AG 1394970 Downstream 9bp 13947 chr11 55036774 55036774 1 + G T HNSC 55036775 + 55036755 55036795 41 AATCTAGCGCTCAGGGCAGGGCCCATCACTGGACTGAGGGA AATCTAGCGCTCAGGGCAGTGCCCATCACTGGACTGAGGGA < 41bp 0.527868242417182 0.820482981312865 NA NA prediction 0.585229477791365 Functional Gain - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036775 chr11:55036774 nonsynonymous SNV 0.131 2 20 hm7G_associated_SNPs_14511 0 0 0 0 2 TRIM48 chr11:55036718 3'AG 55036718 Downstream 57bp 13948 chr11 55036774 55036774 1 + G T HNSC 55036775 + 55036755 55036795 41 AATCTAGCGCTCAGGGCAGGGCCCATCACTGGACTGAGGGA AATCTAGCGCTCAGGGCAGTGCCCATCACTGGACTGAGGGA < 41bp 0.527868242417182 0.820482981312865 NA NA prediction 0.585229477791365 Functional Gain - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55036775 chr11:55036774 nonsynonymous SNV 0.131 2 20 hm7G_associated_SNPs_14511 0 0 0 0 2 TRIM48 chr11:55036815 5'GT 55036815 Upstream 42bp 13949 chr4 186274694 186274694 1 + G T UCEC 186274695 + 186274675 186274715 41 GGTGATGATGTGGATGGGAGGAAAGACGCCTTGGCTGAACC GGTGATGATGTGGATGGGATGAAAGACGCCTTGGCTGAACC < 41bp 0.524808120729421 0.817390636584049 NA NA prediction 0.585165031709256 Functional Gain - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186274695 chr4:186274694 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_14512 0 0 0 0 2 SNX25 chr4:186274639 3'AG 186274639 Downstream 56bp 13950 chr4 186274694 186274694 1 + G T UCEC 186274695 + 186274675 186274715 41 GGTGATGATGTGGATGGGAGGAAAGACGCCTTGGCTGAACC GGTGATGATGTGGATGGGATGAAAGACGCCTTGGCTGAACC < 41bp 0.524808120729421 0.817390636584049 NA NA prediction 0.585165031709256 Functional Gain - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186274695 chr4:186274694 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_14512 0 0 0 0 2 SNX25 chr4:186274756 5'GT 186274756 Upstream 63bp 13951 chr15 57836717 57836717 1 + G T UCEC 57836718 + 57836698 57836738 41 CACCTGGAAGGTTCCTACAGGTCCAGCAAAGAGGGGCTGGT CACCTGGAAGGTTCCTACATGTCCAGCAAAGAGGGGCTGGT < 41bp 0.52659206488639 0.81915556818842 NA NA prediction 0.585127006604061 Functional Gain - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57836718 chr15:57836717 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14515 0 0 0 0 2 CGNL1 chr15:57836671 3'AG 57836671 Downstream 47bp 13952 chr15 57836717 57836717 1 + G T UCEC 57836718 + 57836698 57836738 41 CACCTGGAAGGTTCCTACAGGTCCAGCAAAGAGGGGCTGGT CACCTGGAAGGTTCCTACATGTCCAGCAAAGAGGGGCTGGT < 41bp 0.52659206488639 0.81915556818842 NA NA prediction 0.585127006604061 Functional Gain - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57836718 chr15:57836717 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14515 0 0 0 0 2 CGNL1 chr15:57836795 5'GT 57836795 Upstream 79bp 13953 chr7 26400636 26400636 1 + G T LUAD 26400637 + 26400617 26400657 41 GAGATCCTAGGATTCAGAAGGAGGACTTCTGGCATTCTTAC GAGATCCTAGGATTCAGAATGAGGACTTCTGGCATTCTTAC < 41bp 0.515616881413953 0.808163829571412 NA NA prediction 0.585093896314917 Functional Gain - SNX10 ENSG00000086300 CDS Human protein_coding chr7:26400637 chr7:26400636 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14517 0 0 1 0 2 SNX10 chr7:26400595 3'AG 26400595 Downstream 42bp 13954 chr7 26400636 26400636 1 + G T LUAD 26400637 + 26400617 26400657 41 GAGATCCTAGGATTCAGAAGGAGGACTTCTGGCATTCTTAC GAGATCCTAGGATTCAGAATGAGGACTTCTGGCATTCTTAC < 41bp 0.515616881413953 0.808163829571412 NA NA prediction 0.585093896314917 Functional Gain - SNX10 ENSG00000086300 CDS Human protein_coding chr7:26400637 chr7:26400636 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14517 0 0 1 0 2 SNX10 chr7:26400681 5'GT 26400681 Upstream 46bp 13955 chr5 10448469 10448469 1 + G T COAD 10448470 + 10448450 10448490 41 AGACACAGGCCTGACTCAAGGACTCCTGAAAGTTTTGCACA AGACACAGGCCTGACTCAATGACTCCTGAAAGTTTTGCACA < 41bp 0.539203017304196 0.831748826338114 NA NA prediction 0.585091618067837 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10448470 chr5:10448469 stopgain 0.973 1 20 hm7G_associated_SNPs_14518 0 0 0 0 2 ROPN1L chr5:10448372 3'AG 10448372 Downstream 98bp 13956 chr5 10448469 10448469 1 + G T COAD 10448470 + 10448450 10448490 41 AGACACAGGCCTGACTCAAGGACTCCTGAAAGTTTTGCACA AGACACAGGCCTGACTCAATGACTCCTGAAAGTTTTGCACA < 41bp 0.539203017304196 0.831748826338114 NA NA prediction 0.585091618067837 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10448470 chr5:10448469 stopgain 0.973 1 20 hm7G_associated_SNPs_14518 0 0 0 0 2 ROPN1L chr5:10448495 5'GT 10448495 Upstream 27bp 13957 chr11 26619981 26619981 1 + G T LUSC 26619982 + 26619962 26620002 41 ACTTGGGACCTTATCGAATGGGAAGAAGAGGAGGTAAGATG ACTTGGGACCTTATCGAATTGGAAGAAGAGGAGGTAAGATG < 41bp 0.492291635719873 0.7925288575195 NA NA prediction 0.585057715038999 Functional Gain - ANO3 ENSG00000134343 CDS Human protein_coding chr11:26619982 chr11:26619981 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14521 0 0 0 0 2 ANO3 chr11:26619912 3'AG 26619912 Downstream 70bp 13958 chr11 26619981 26619981 1 + G T LUSC 26619982 + 26619962 26620002 41 ACTTGGGACCTTATCGAATGGGAAGAAGAGGAGGTAAGATG ACTTGGGACCTTATCGAATTGGAAGAAGAGGAGGTAAGATG < 41bp 0.492291635719873 0.7925288575195 NA NA prediction 0.585057715038999 Functional Gain - ANO3 ENSG00000134343 CDS Human protein_coding chr11:26619982 chr11:26619981 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14521 0 0 0 0 2 ANO3 chr11:26619994 5'GT 26619994 Upstream 14bp 13959 chr6 44201185 44201185 1 + G T COAD 44201186 + 44201166 44201206 41 AGCTGAGGCAGAGACCGCAGGAGCCATCATGGCCTTCTTCC AGCTGAGGCAGAGACCGCATGAGCCATCATGGCCTTCTTCC < 41bp 0.519571587677496 0.812074306013564 NA NA prediction 0.585005436672137 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44201186 chr6:44201185 stopgain 0.974 1 20 hm7G_associated_SNPs_14524 0 0 1 0 1 SLC29A1 chr6:44201154 3'AG 44201154 Downstream 32bp 13960 chr6 28331143 28331143 1 + G T SARC 28331144 + 28331124 28331164 41 GATAAAGTGGTAGCTTCTAGGCTTACTCCAGAGTCCCAGGT GATAAAGTGGTAGCTTCTATGCTTACTCCAGAGTCCCAGGT < 41bp 0.476091218999821 0.792482157025053 NA NA prediction 0.584964314050106 Functional Gain - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28331144 chr6:28331143 nonsynonymous SNV 0.022 1 20 hm7G_associated_SNPs_14525 0 0 1 0 2 ZKSCAN3 chr6:28331080 3'AG 28331080 Downstream 64bp 13961 chr6 28331143 28331143 1 + G T SARC 28331144 + 28331124 28331164 41 GATAAAGTGGTAGCTTCTAGGCTTACTCCAGAGTCCCAGGT GATAAAGTGGTAGCTTCTATGCTTACTCCAGAGTCCCAGGT < 41bp 0.476091218999821 0.792482157025053 NA NA prediction 0.584964314050106 Functional Gain - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28331144 chr6:28331143 nonsynonymous SNV 0.022 1 20 hm7G_associated_SNPs_14525 0 0 1 0 2 ZKSCAN3 chr6:28331162 5'GT 28331162 Upstream 20bp 13962 chr1 203472100 203472100 1 + G T LIHC 203472101 + 203472081 203472121 41 CTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAGCCTGCG CTGCTGGATTCTATCCCGGTGCCTTTGCCCCTGAGCCTGCG < 41bp 0.556966657866538 0.84943744837196 NA NA prediction 0.584941581010845 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472101 chr1:203472100 nonsynonymous SNV 0.527 0 20 hm7G_associated_SNPs_14527 0 0 0 0 2 OPTC chr1:203472042 3'AG 203472042 Downstream 59bp 13963 chr1 203472100 203472100 1 + G T LIHC 203472101 + 203472081 203472121 41 CTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAGCCTGCG CTGCTGGATTCTATCCCGGTGCCTTTGCCCCTGAGCCTGCG < 41bp 0.556966657866538 0.84943744837196 NA NA prediction 0.584941581010845 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472101 chr1:203472100 nonsynonymous SNV 0.527 0 20 hm7G_associated_SNPs_14527 0 0 0 0 2 OPTC chr1:203472137 5'GT 203472137 Upstream 38bp 13964 chr19 36579971 36579971 1 + G T PCPG 36579972 + 36579952 36579992 41 TCCAGATGATCAGCTGTGGGGCTGACAAGAGCATCTACTTT TCCAGATGATCAGCTGTGGTGCTGACAAGAGCATCTACTTT < 41bp 0.461073052955716 0.792468329507336 NA NA prediction 0.584936659014671 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579972 chr19:36579971 synonymous SNV . 0 20 hm7G_associated_SNPs_14528 0 0 1 0 2 WDR62 chr19:36579940 3'AG 36579940 Downstream 32bp 13965 chr19 36579971 36579971 1 + G T PCPG 36579972 + 36579952 36579992 41 TCCAGATGATCAGCTGTGGGGCTGACAAGAGCATCTACTTT TCCAGATGATCAGCTGTGGTGCTGACAAGAGCATCTACTTT < 41bp 0.461073052955716 0.792468329507336 NA NA prediction 0.584936659014671 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579972 chr19:36579971 synonymous SNV . 0 20 hm7G_associated_SNPs_14528 0 0 1 0 2 WDR62 chr19:36580007 5'GT 36580007 Upstream 37bp 13966 chr17 27011893 27011893 1 + G T COAD 27011894 + 27011874 27011914 41 GTTCTGCGCCCTGGTCAATGGTGAAGGAGAAGTGACAGACT GTTCTGCGCCCTGGTCAATTGTGAAGGAGAAGTGACAGACT < 41bp 0.535928826992477 0.828392865482663 NA NA prediction 0.584928076980373 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011894 chr17:27011893 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14530 0 0 1 0 1 SUPT6H chr17:27011862 3'AG 27011862 Downstream 32bp 13967 chr1 46874247 46874247 1 + G T COAD 46874248 + 46874228 46874268 41 AACAGAGCCTTGAGGCTGCGGGGCACACGGTATGACTGCAG AACAGAGCCTTGAGGCTGCTGGGCACACGGTATGACTGCAG < 41bp 0.464693661416143 0.792437476963022 NA NA prediction 0.584874953926045 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46874248 chr1:46874247 synonymous SNV . 0 20 hm7G_associated_SNPs_14532 0 0 0 0 1 FAAH chr1:46874256 5'GT 46874256 Upstream 10bp 13968 chr3 129195166 129195166 1 + G T rs117517364 129195167 + 129195147 129195187 41 TTTTTCCTCAGATTGGAAAGGATCGGGCACTGAACTTTGAC TTTTTCCTCAGATTGGAAATGATCGGGCACTGAACTTTGAC < 41bp 0.51369594327189 0.806079655609959 NA NA prediction 0.584767424676139 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129195167 chr3:129195166 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_14536 2 0 1 0 1 IFT122 chr3:129195158 3'AG 129195158 Downstream 9bp 13969 chr19 58016027 58016027 1 + G T OV 58016028 + 58016008 58016048 41 AACTCTGTCCATCTTAGCAGGGCTATGTGACCTTTGAGGAC AACTCTGTCCATCTTAGCATGGCTATGTGACCTTTGAGGAC < 41bp 0.47953207920649 0.792380391592145 NA NA prediction 0.584760783184291 Functional Gain - ZNF773;ZNF773 ENSG00000152439;ENSG00000268107;ENSG00000152439;ENSG00000268107 exonic;splicing Human other chr19:58016028 chr19:58016027 nonsynonymous SNV 0.043 1 20 hm7G_associated_SNPs_14537 0 0 0 0 1 ZNF773 chr19:58016025 3'AG 58016025 Downstream 3bp 13970 chr1 180053261 180053261 1 + G T COAD 180053262 + 180053242 180053282 41 AAGAAGGAACAGAAAAAAAGGCAAAAGGAAAGACTGAAAGC AAGAAGGAACAGAAAAAAATGCAAAAGGAAAGACTGAAAGC < 41bp 0.515361871604555 0.807728201976623 NA NA prediction 0.584732660744137 Functional Gain - CEP350 ENSG00000135837 CDS Human protein_coding chr1:180053262 chr1:180053261 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_14539 0 0 1 0 1 CEP350 chr1:180053313 5'GT 180053313 Upstream 53bp 13971 chr19 41038564 41038564 1 + G T SARC 41038565 + 41038545 41038585 41 TCCATGAGAAGATGCTGATGGCGCGGGATGGCACGCGGGAG TCCATGAGAAGATGCTGATTGCGCGGGATGGCACGCGGGAG < 41bp 0.547651583082573 0.840012528064956 NA NA prediction 0.584721889964765 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41038565 chr19:41038564 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14540 0 0 1 0 1 SPTBN4 chr19:41038532 3'AG 41038532 Downstream 33bp 13972 chr17 18166136 18166136 1 + G T rs147166213 18166137 + 18166117 18166157 41 CCCGCCTGGTGCTGGGCGTGGGCGGGGCTGCTGTGCTGGGC CCCGCCTGGTGCTGGGCGTTGGCGGGGCTGCTGTGCTGGGC < 41bp 0.55001571613476 0.842367907335257 NA NA prediction 0.584704382400994 Functional Gain - MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18166137 chr17:18166136 synonymous SNV . 0 20 hm7G_associated_SNPs_14541 0 0 1 0 1 MIEF2 chr17:18166181 5'GT 18166181 Upstream 46bp 13973 chr5 23510090 23510090 1 + G T HNSC 23510091 + 23510071 23510111 41 AGGCCATCAAACTCCAGGTGGATGACACAGAAGATTCTGAT AGGCCATCAAACTCCAGGTTGATGACACAGAAGATTCTGAT < 41bp 0.544242302586412 0.836573423728511 NA NA prediction 0.584662242284197 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23510091 chr5:23510090 synonymous SNV . 0 20 hm7G_associated_SNPs_14543 0 0 0 0 2 PRDM9 chr5:23510029 3'AG 23510029 Downstream 62bp 13974 chr5 23510090 23510090 1 + G T HNSC 23510091 + 23510071 23510111 41 AGGCCATCAAACTCCAGGTGGATGACACAGAAGATTCTGAT AGGCCATCAAACTCCAGGTTGATGACACAGAAGATTCTGAT < 41bp 0.544242302586412 0.836573423728511 NA NA prediction 0.584662242284197 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23510091 chr5:23510090 synonymous SNV . 0 20 hm7G_associated_SNPs_14543 0 0 0 0 2 PRDM9 chr5:23510136 5'GT 23510136 Upstream 47bp 13975 chr12 41408056 41408056 1 + G T UCEC 41408057 + 41408037 41408077 41 TGTGGCTCCTTCAGATGTAGGAGGTGGAGGTGGAAGAAACA TGTGGCTCCTTCAGATGTATGAGGTGGAGGTGGAAGAAACA < 41bp 0.511225353420316 0.803548168862273 NA NA prediction 0.584645630883913 Functional Gain - CNTN1 ENSG00000018236 CDS Human protein_coding chr12:41408057 chr12:41408056 stopgain 1.000 1 20 hm7G_associated_SNPs_14545 0 0 0 0 2 CNTN1 chr12:41408030 3'AG 41408030 Downstream 27bp 13976 chr12 41408056 41408056 1 + G T UCEC 41408057 + 41408037 41408077 41 TGTGGCTCCTTCAGATGTAGGAGGTGGAGGTGGAAGAAACA TGTGGCTCCTTCAGATGTATGAGGTGGAGGTGGAAGAAACA < 41bp 0.511225353420316 0.803548168862273 NA NA prediction 0.584645630883913 Functional Gain - CNTN1 ENSG00000018236 CDS Human protein_coding chr12:41408057 chr12:41408056 stopgain 1.000 1 20 hm7G_associated_SNPs_14545 0 0 0 0 2 CNTN1 chr12:41408100 5'GT 41408100 Upstream 45bp 13977 chr12 104476528 104476528 1 + G T UCEC 104476529 + 104476509 104476549 41 CCCTAGTATCAGATTCTCAGGAAGATAAAAAAAATTCAAGA CCCTAGTATCAGATTCTCATGAAGATAAAAAAAATTCAAGA < 41bp 0.516646009921762 0.808923176523911 NA NA prediction 0.584554333204298 Functional Gain - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104476529 chr12:104476528 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_14548 0 0 1 1 1 HCFC2 chr12:104476491 3'AG 104476491 Downstream 38bp 13978 chr8 67425871 67425871 1 + G T STAD 67425872 + 67425852 67425892 41 GGGAGCTGTTCTGATGAGAGGGTAAGTGCTGCGTCTCTGGC GGGAGCTGTTCTGATGAGATGGTAAGTGCTGCGTCTCTGGC < 41bp 0.51862210939677 0.810881724563025 NA NA prediction 0.584519230332508 Functional Gain - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67425872 chr8:67425871 stopgain 0.998 2 20 hm7G_associated_SNPs_14550 0 0 0 0 1 C8orf46 chr8:67425775 3'AG 67425775 Downstream 97bp 13979 chr12 21327596 21327596 1 + G T LUSC 21327597 + 21327577 21327617 41 GAATCGGTTGTTTCATTATGGGAATTGGAGGTGTTTTGACT GAATCGGTTGTTTCATTATTGGAATTGGAGGTGTTTTGACT < 41bp 0.512234076546591 0.804488006504097 NA NA prediction 0.584507859915012 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21327597 chr12:21327596 nonsynonymous SNV 0.774 4 20 hm7G_associated_SNPs_14551 0 0 0 0 2 SLCO1B1 chr12:21327511 3'AG 21327511 Downstream 86bp 13980 chr12 21327596 21327596 1 + G T LUSC 21327597 + 21327577 21327617 41 GAATCGGTTGTTTCATTATGGGAATTGGAGGTGTTTTGACT GAATCGGTTGTTTCATTATTGGAATTGGAGGTGTTTTGACT < 41bp 0.512234076546591 0.804488006504097 NA NA prediction 0.584507859915012 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21327597 chr12:21327596 nonsynonymous SNV 0.774 4 20 hm7G_associated_SNPs_14551 0 0 0 0 2 SLCO1B1 chr12:21327643 5'GT 21327643 Upstream 48bp 13981 chr1 23239966 23239966 1 + G T SKCM 23239967 + 23239947 23239987 41 TCCCAAAGGGACATTCTCCGGGTTGGGGTCACTTTGGCTGG TCCCAAAGGGACATTCTCCTGGTTGGGGTCACTTTGGCTGG < 41bp 0.494819150941768 0.792241475097293 NA NA prediction 0.584482950194585 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23239967 chr1:23239966 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14552 0 0 0 0 2 EPHB2 chr1:23239955 3'AG 23239955 Downstream 12bp 13982 chr1 23239966 23239966 1 + G T SKCM 23239967 + 23239947 23239987 41 TCCCAAAGGGACATTCTCCGGGTTGGGGTCACTTTGGCTGG TCCCAAAGGGACATTCTCCTGGTTGGGGTCACTTTGGCTGG < 41bp 0.494819150941768 0.792241475097293 NA NA prediction 0.584482950194585 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23239967 chr1:23239966 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14552 0 0 0 0 2 EPHB2 chr1:23240057 5'GT 23240057 Upstream 92bp 13983 chr2 69304588 69304588 1 + G T LUSC 69304589 + 69304569 69304609 41 TGTGTTTCCCGTGAATGACGGCTTTCAGGCTCTGCAAGGCA TGTGTTTCCCGTGAATGACTGCTTTCAGGCTCTGCAAGGCA < 41bp 0.54346402125296 0.835702949368655 NA NA prediction 0.58447785623139 Functional Gain - ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69304589 chr2:69304588 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14553 0 0 1 0 2 ANTXR1 chr2:69304540 3'AG 69304540 Downstream 49bp 13984 chr2 69304588 69304588 1 + G T LUSC 69304589 + 69304569 69304609 41 TGTGTTTCCCGTGAATGACGGCTTTCAGGCTCTGCAAGGCA TGTGTTTCCCGTGAATGACTGCTTTCAGGCTCTGCAAGGCA < 41bp 0.54346402125296 0.835702949368655 NA NA prediction 0.58447785623139 Functional Gain - ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69304589 chr2:69304588 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14553 0 0 1 0 2 ANTXR1 chr2:69304620 5'GT 69304620 Upstream 33bp 13985 chr16 2578313 2578313 1 + G T UCEC 2578314 + 2578294 2578334 41 GGCCGCTGCATCTTCTATGGGATGATTGCAGATGGCACGCA GGCCGCTGCATCTTCTATGTGATGATTGCAGATGGCACGCA < 41bp 0.469437573290916 0.792237083451264 NA NA prediction 0.584474166902528 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578314 chr16:2578313 nonsynonymous SNV 0.659 4 20 hm7G_associated_SNPs_14554 0 0 1 0 1 AMDHD2 chr16:2578237 3'AG 2578237 Downstream 77bp 13986 chr5 112915284 112915284 1 + G T LUAD 112915285 + 112915265 112915305 41 CATTATGTACTTGGACAGTGGATGGCATTCCCAATGACAGT CATTATGTACTTGGACAGTTGATGGCATTCCCAATGACAGT < 41bp 0.502737540006888 0.794973662046868 NA NA prediction 0.58447224407996 Functional Gain - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112915285 chr5:112915284 synonymous SNV . 0 20 hm7G_associated_SNPs_14555 0 0 1 0 1 YTHDC2 chr5:112915283 3'AG 112915283 Downstream 2bp 13987 chr2 218954038 218954038 1 + G T LUAD 218954039 + 218954019 218954059 41 TGGCTCCCGAGTGCTGTGTGGCCTGTAGCAAGATCTTTGGC TGGCTCCCGAGTGCTGTGTTGCCTGTAGCAAGATCTTTGGC < 41bp 0.469080299813934 0.792232498913438 NA NA prediction 0.584464997826876 Functional Gain - RUFY4 ENSG00000188282 CDS Human protein_coding chr2:218954039 chr2:218954038 synonymous SNV . 0 20 hm7G_associated_SNPs_14556 0 0 0 0 2 RUFY4 chr2:218953975 3'AG 218953975 Downstream 64bp 13988 chr2 218954038 218954038 1 + G T LUAD 218954039 + 218954019 218954059 41 TGGCTCCCGAGTGCTGTGTGGCCTGTAGCAAGATCTTTGGC TGGCTCCCGAGTGCTGTGTTGCCTGTAGCAAGATCTTTGGC < 41bp 0.469080299813934 0.792232498913438 NA NA prediction 0.584464997826876 Functional Gain - RUFY4 ENSG00000188282 CDS Human protein_coding chr2:218954039 chr2:218954038 synonymous SNV . 0 20 hm7G_associated_SNPs_14556 0 0 0 0 2 RUFY4 chr2:218954085 5'GT 218954085 Upstream 48bp 13989 chr1 222832108 222832108 1 + G T UCEC 222832109 + 222832089 222832129 41 CGGCAAGAAAGAGAGCACAGGCTGTCAGCTGCAGATGAAAA CGGCAAGAAAGAGAGCACATGCTGTCAGCTGCAGATGAAAA < 41bp 0.531808514378953 0.824001094969369 NA NA prediction 0.584385161180832 Functional Gain - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222832109 chr1:222832108 nonsynonymous SNV 0.943 1 20 hm7G_associated_SNPs_14557 0 0 1 0 2 MIA3 chr1:222832064 3'AG 222832064 Downstream 45bp 13990 chr1 222832108 222832108 1 + G T UCEC 222832109 + 222832089 222832129 41 CGGCAAGAAAGAGAGCACAGGCTGTCAGCTGCAGATGAAAA CGGCAAGAAAGAGAGCACATGCTGTCAGCTGCAGATGAAAA < 41bp 0.531808514378953 0.824001094969369 NA NA prediction 0.584385161180832 Functional Gain - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222832109 chr1:222832108 nonsynonymous SNV 0.943 1 20 hm7G_associated_SNPs_14557 0 0 1 0 2 MIA3 chr1:222832165 5'GT 222832165 Upstream 58bp 13991 chr16 2578487 2578487 1 + G T LUAD 2578488 + 2578468 2578508 41 CCGATGCCATCCCTGCCTTGGGCCTGGGCAACGGCCGGCAC CCGATGCCATCCCTGCCTTTGGCCTGGGCAACGGCCGGCAC < 41bp 0.565853284911584 0.85799267672778 NA NA prediction 0.584278783632393 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578488 chr16:2578487 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14559 0 0 1 0 2 AMDHD2 chr16:2578453 3'AG 2578453 Downstream 35bp 13992 chr16 2578487 2578487 1 + G T LUAD 2578488 + 2578468 2578508 41 CCGATGCCATCCCTGCCTTGGGCCTGGGCAACGGCCGGCAC CCGATGCCATCCCTGCCTTTGGCCTGGGCAACGGCCGGCAC < 41bp 0.565853284911584 0.85799267672778 NA NA prediction 0.584278783632393 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578488 chr16:2578487 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14559 0 0 1 0 2 AMDHD2 chr16:2578560 5'GT 2578560 Upstream 74bp 13993 chr15 90138748 90138748 1 + G T LUAD 90138749 + 90138729 90138769 41 CAGATGGCAGTCCGGATGTGGCTGGGGAGAAAGGAATCCAA CAGATGGCAGTCCGGATGTTGCTGGGGAGAAAGGAATCCAA < 41bp 0.552444736449467 0.844584103505135 NA NA prediction 0.584278734111336 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90138749 chr15:90138748 synonymous SNV . 0 20 hm7G_associated_SNPs_14560 0 0 1 0 1 TICRR chr15:90138842 5'GT 90138842 Upstream 95bp 13994 chr17 78972932 78972932 1 + G T LUSC 78972933 + 78972913 78972953 41 AGGCCAGGCCCAGGCAGGCGGAGCTGGTGGCAGCTTCGTAA AGGCCAGGCCCAGGCAGGCTGAGCTGGTGGCAGCTTCGTAA < 41bp 0.513060151319541 0.805164101832874 NA NA prediction 0.584207901026667 Functional Gain - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78972933 chr17:78972932 synonymous SNV . 0 20 hm7G_associated_SNPs_14561 0 0 1 0 1 CHMP6 chr17:78972898 3'AG 78972898 Downstream 35bp 13995 chr11 60561516 60561516 1 + G T LUSC 60561517 + 60561497 60561537 41 GCCTCTTCGTCATCTCCAAGGATCTCTTTCTGGAGAGCCCA GCCTCTTCGTCATCTCCAATGATCTCTTTCTGGAGAGCCCA < 41bp 0.558190280209634 0.850285714424161 NA NA prediction 0.584190868429054 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561517 chr11:60561516 nonsynonymous SNV 0.960 2 20 hm7G_associated_SNPs_14562 0 0 0 0 2 MS4A10 chr11:60561445 3'AG 60561445 Downstream 72bp 13996 chr11 60561516 60561516 1 + G T LUSC 60561517 + 60561497 60561537 41 GCCTCTTCGTCATCTCCAAGGATCTCTTTCTGGAGAGCCCA GCCTCTTCGTCATCTCCAATGATCTCTTTCTGGAGAGCCCA < 41bp 0.558190280209634 0.850285714424161 NA NA prediction 0.584190868429054 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60561517 chr11:60561516 nonsynonymous SNV 0.960 2 20 hm7G_associated_SNPs_14562 0 0 0 0 2 MS4A10 chr11:60561576 5'GT 60561576 Upstream 61bp 13997 chr1 28176633 28176633 1 + G T rs35775135 28176634 + 28176614 28176654 41 TGGAGGGCCCTGGCTCCCTGGGCCTGGAGGAATCAGGGAGC TGGAGGGCCCTGGCTCCCTTGGCCTGGAGGAATCAGGGAGC < 41bp 0.472188230363237 0.792088894174043 NA NA prediction 0.584177788348085 Functional Gain - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28176634 chr1:28176633 synonymous SNV . 0 20 hm7G_associated_SNPs_14563 0 0 1 1 1 PPP1R8 chr1:28176604 3'AG 28176604 Downstream 30bp 13998 chr18 29039893 29039893 1 + G T UCEC 29039894 + 29039874 29039914 41 CCTTCAAAATTGTCTCTCAGGAACCAGCAGGCACACCCATG CCTTCAAAATTGTCTCTCATGAACCAGCAGGCACACCCATG < 41bp 0.534561222833924 0.826642860508972 NA NA prediction 0.584163275350096 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29039894 chr18:29039893 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14564 0 0 0 0 2 DSG3 chr18:29039808 3'AG 29039808 Downstream 86bp 13999 chr18 29039893 29039893 1 + G T UCEC 29039894 + 29039874 29039914 41 CCTTCAAAATTGTCTCTCAGGAACCAGCAGGCACACCCATG CCTTCAAAATTGTCTCTCATGAACCAGCAGGCACACCCATG < 41bp 0.534561222833924 0.826642860508972 NA NA prediction 0.584163275350096 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29039894 chr18:29039893 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14564 0 0 0 0 2 DSG3 chr18:29039974 5'GT 29039974 Upstream 82bp 14000 chr2 88383991 88383991 1 + G T ESCA 88383992 + 88383972 88384012 41 CCATCAAGAGATATGGGAAGGTGCCCAATGAGAACATCAGG CCATCAAGAGATATGGGAATGTGCCCAATGAGAACATCAGG < 41bp 0.524058302152919 0.816135908994565 NA NA prediction 0.58415521368329 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88383992 chr2:88383991 nonsynonymous SNV 0.946 2 20 hm7G_associated_SNPs_14565 0 0 0 0 2 SMYD1 chr2:88383991 5'GT 88383991 Upstream 1bp 14001 chr2 88383991 88383991 1 + G T ESCA 88383992 + 88383972 88384012 41 CCATCAAGAGATATGGGAAGGTGCCCAATGAGAACATCAGG CCATCAAGAGATATGGGAATGTGCCCAATGAGAACATCAGG < 41bp 0.524058302152919 0.816135908994565 NA NA prediction 0.58415521368329 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88383992 chr2:88383991 nonsynonymous SNV 0.946 2 20 hm7G_associated_SNPs_14565 0 0 0 0 2 SMYD1 chr2:88384011 5'GT 88384011 Upstream 21bp 14002 chr11 118220643 118220643 1 + G T UCEC 118220644 + 118220624 118220664 41 AGGGATGTATCAGTGTAAAGGATCACAGAACAAGTCAAAAC AGGGATGTATCAGTGTAAATGATCACAGAACAAGTCAAAAC < 41bp 0.514267718579287 0.806343852733294 NA NA prediction 0.584152268308014 Functional Gain - CD3G ENSG00000160654 CDS Human protein_coding chr11:118220644 chr11:118220643 stopgain 0.242 0 20 hm7G_associated_SNPs_14566 0 0 1 0 1 CD3G chr11:118220685 5'GT 118220685 Upstream 43bp 14003 chr20 10032408 10032408 1 + G T UCEC 10032409 + 10032389 10032429 41 TGAGCTTCTTGTTGAATCTGGAGCTTTAATAGATGCAGCTT TGAGCTTCTTGTTGAATCTTGAGCTTTAATAGATGCAGCTT < 41bp 0.533233048822178 0.825306145334065 NA NA prediction 0.584146193023774 Functional Gain - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10032409 chr20:10032408 stopgain 0.930 1 20 hm7G_associated_SNPs_14568 0 0 1 0 1 ANKEF1 chr20:10032311 3'AG 10032311 Downstream 98bp 14004 chr7 123595072 123595072 1 + G T LUAD 123595073 + 123595053 123595093 41 TGAACTTGTGTATACATTTGGCGAAACTGTTGCTCTGGGTG TGAACTTGTGTATACATTTTGCGAAACTGTTGCTCTGGGTG < 41bp 0.517670545083096 0.809724288724073 NA NA prediction 0.584107487281953 Functional Gain - SPAM1 ENSG00000106304 CDS Human protein_coding chr7:123595073 chr7:123595072 nonsynonymous SNV 0.085 4 20 hm7G_associated_SNPs_14572 0 0 0 0 2 SPAM1 chr7:123595051 3'AG 123595051 Downstream 22bp 14005 chr7 123595072 123595072 1 + G T LUAD 123595073 + 123595053 123595093 41 TGAACTTGTGTATACATTTGGCGAAACTGTTGCTCTGGGTG TGAACTTGTGTATACATTTTGCGAAACTGTTGCTCTGGGTG < 41bp 0.517670545083096 0.809724288724073 NA NA prediction 0.584107487281953 Functional Gain - SPAM1 ENSG00000106304 CDS Human protein_coding chr7:123595073 chr7:123595072 nonsynonymous SNV 0.085 4 20 hm7G_associated_SNPs_14572 0 0 0 0 2 SPAM1 chr7:123595140 5'GT 123595140 Upstream 69bp 14006 chr16 30007658 30007658 1 + G T UCEC 30007659 + 30007639 30007679 41 GGCCGGCGGACGGCGAAGTGGACTACAAAAAAAAATACCGG GGCCGGCGGACGGCGAAGTTGACTACAAAAAAAAATACCGG < 41bp 0.525397472073873 0.817441042881544 NA NA prediction 0.584087141615343 Functional Gain - INO80E ENSG00000169592 CDS Human protein_coding chr16:30007659 chr16:30007658 synonymous SNV . 0 20 hm7G_associated_SNPs_14573 0 0 1 1 1 INO80E chr16:30007712 5'GT 30007712 Upstream 55bp 14007 chr11 70201752 70201752 1 + G T KIRC 70201753 + 70201733 70201773 41 CTTTCCTCGAAGCTCCACAGGCTCCCAGGATGGTCCCGTGA CTTTCCTCGAAGCTCCACATGCTCCCAGGATGGTCCCGTGA < 41bp 0.544805449510664 0.836848486849667 NA NA prediction 0.584086074678006 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70201753 chr11:70201752 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_14574 0 0 1 0 1 PPFIA1 chr11:70201745 3'AG 70201745 Downstream 8bp 14008 chr17 9791285 9791285 1 + G T LUAD 9791286 + 9791266 9791306 41 GCAGTATGGTTTTGCCAATGGAGAGGTATGATTTCCACGTT GCAGTATGGTTTTGCCAATTGAGAGGTATGATTTCCACGTT < 41bp 0.514633811463956 0.806653080647384 NA NA prediction 0.584038538366856 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9791286 chr17:9791285 stopgain 0.991 0 20 hm7G_associated_SNPs_14577 0 0 0 0 2 GLP2R chr17:9791249 3'AG 9791249 Downstream 37bp 14009 chr17 9791285 9791285 1 + G T LUAD 9791286 + 9791266 9791306 41 GCAGTATGGTTTTGCCAATGGAGAGGTATGATTTCCACGTT GCAGTATGGTTTTGCCAATTGAGAGGTATGATTTCCACGTT < 41bp 0.514633811463956 0.806653080647384 NA NA prediction 0.584038538366856 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9791286 chr17:9791285 stopgain 0.991 0 20 hm7G_associated_SNPs_14577 0 0 0 0 2 GLP2R chr17:9791290 5'GT 9791290 Upstream 6bp 14010 chr15 99828050 99828050 1 + G T OV 99828051 + 99828031 99828071 41 TTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTA TTGTAAAACTCCAATGTCTTGATCTTAGTGACAATGCCTTA < 41bp 0.474648013227294 0.792018782261583 NA NA prediction 0.584037564523167 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99828051 chr15:99828050 synonymous SNV . 0 20 hm7G_associated_SNPs_14578 0 0 1 3 1 LRRC28 chr15:99828019 3'AG 99828019 Downstream 32bp 14011 chr1 175046899 175046899 1 + G T ACC 175046900 + 175046880 175046920 41 TGGCCCGGGTGAAGAAGCTGGAGGAAGAGATGGTGGAGATG TGGCCCGGGTGAAGAAGCTTGAGGAAGAGATGGTGGAGATG < 41bp 0.549390534160898 0.841405963992861 NA NA prediction 0.584030859663925 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175046900 chr1:175046899 synonymous SNV . 0 20 hm7G_associated_SNPs_14579 0 0 0 0 1 TNN chr1:175046963 5'GT 175046963 Upstream 65bp 14012 chr11 60698110 60698110 1 + G T LUAD 60698111 + 60698091 60698131 41 ATCACCTGCCACCGTGCTGGGCTCACAGAGCCAGATTCCAG ATCACCTGCCACCGTGCTGTGCTCACAGAGCCAGATTCCAG < 41bp 0.547471651862948 0.839479907169827 NA NA prediction 0.584016510613759 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60698111 chr11:60698110 nonsynonymous SNV 0.323 0 20 hm7G_associated_SNPs_14583 0 0 1 0 1 TMEM132A chr11:60698131 5'GT 60698131 Upstream 22bp 14013 chr4 110908986 110908986 1 + G T UCEC 110908987 + 110908967 110909007 41 CACATGTCAGTGTTTGAAAGGATTTGCTGGGGATGGAAAAC CACATGTCAGTGTTTGAAATGATTTGCTGGGGATGGAAAAC < 41bp 0.530761345083 0.822769173220797 NA NA prediction 0.584015656275595 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110908987 chr4:110908986 stopgain 0.928 1 20 hm7G_associated_SNPs_14584 0 0 1 0 2 EGF chr4:110908900 3'AG 110908900 Downstream 87bp 14014 chr4 110908986 110908986 1 + G T UCEC 110908987 + 110908967 110909007 41 CACATGTCAGTGTTTGAAAGGATTTGCTGGGGATGGAAAAC CACATGTCAGTGTTTGAAATGATTTGCTGGGGATGGAAAAC < 41bp 0.530761345083 0.822769173220797 NA NA prediction 0.584015656275595 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110908987 chr4:110908986 stopgain 0.928 1 20 hm7G_associated_SNPs_14584 0 0 1 0 2 EGF chr4:110909016 5'GT 110909016 Upstream 31bp 14015 chr20 1099525 1099525 1 + G T LUAD 1099526 + 1099506 1099546 41 GGTGACACACGGTTACTTCGGCTTGGGTGTCGGTGACCAGG GGTGACACACGGTTACTTCTGCTTGGGTGTCGGTGACCAGG < 41bp 0.532734426493567 0.824733289711308 NA NA prediction 0.583997726435483 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1099526 chr20:1099525 nonsynonymous SNV 0.022 0 20 hm7G_associated_SNPs_14585 0 0 1 0 1 PSMF1 chr20:1099545 5'GT 1099545 Upstream 21bp 14016 chr3 178928348 178928348 1 + G T STAD 178928349 + 178928329 178928369 41 ATTTAGCTATTCCCACGCAGGACTGGTAAGGCAAATCACTG ATTTAGCTATTCCCACGCATGACTGGTAAGGCAAATCACTG < 41bp 0.517325159464021 0.809315822376287 NA NA prediction 0.583981325824532 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178928349 chr3:178928348 stopgain 1.000 1 20 hm7G_associated_SNPs_14586 0 0 0 0 1 PIK3CA chr3:178928353 5'GT 178928353 Upstream 6bp 14017 chr14 60749471 60749471 1 + G T LUAD 60749472 + 60749452 60749492 41 GAAAAGCATAATGCCCAGGGGCAGGGTAATGGGTTGCGATA GAAAAGCATAATGCCCAGGTGCAGGGTAATGGGTTGCGATA < 41bp 0.504718446874378 0.796703818303659 NA NA prediction 0.583970742858562 Functional Gain - PPM1A ENSG00000100614 CDS Human protein_coding chr14:60749472 chr14:60749471 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14587 0 0 1 0 1 PPM1A chr14:60749402 3'AG 60749402 Downstream 70bp 14018 chr17 78092152 78092152 1 + G T LGG 78092153 + 78092133 78092173 41 CAGGTCATCTTCCTGGCCAGGAATGTGAGTCCTGGGGCTGC CAGGTCATCTTCCTGGCCATGAATGTGAGTCCTGGGGCTGC < 41bp 0.521763150491018 0.813739743229756 NA NA prediction 0.583953185477477 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78092153 chr17:78092152 nonsynonymous SNV 0.020 1 20 hm7G_associated_SNPs_14589 0 0 1 0 1 GAA chr17:78092156 5'GT 78092156 Upstream 5bp 14019 chr10 22607627 22607627 1 + G T DLBC 22607628 + 22607608 22607648 41 CGGATGTTTCTTGGCGCTTGGAATATCAGATAAAGGTAAAG CGGATGTTTCTTGGCGCTTTGAATATCAGATAAAGGTAAAG < 41bp 0.488556724584404 0.791974189670992 NA NA prediction 0.583948379341983 Functional Gain - COMMD3 ENSG00000148444 CDS Human protein_coding chr10:22607628 chr10:22607627 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14590 0 0 1 2 2 COMMD3 chr10:22607582 3'AG 22607582 Downstream 46bp 14020 chr10 22607627 22607627 1 + G T DLBC 22607628 + 22607608 22607648 41 CGGATGTTTCTTGGCGCTTGGAATATCAGATAAAGGTAAAG CGGATGTTTCTTGGCGCTTTGAATATCAGATAAAGGTAAAG < 41bp 0.488556724584404 0.791974189670992 NA NA prediction 0.583948379341983 Functional Gain - COMMD3 ENSG00000148444 CDS Human protein_coding chr10:22607628 chr10:22607627 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14590 0 0 1 2 2 COMMD3 chr10:22607642 5'GT 22607642 Upstream 16bp 14021 chr5 64081315 64081315 1 + G T LUAD 64081316 + 64081296 64081336 41 TTAATTTGATAGGTTACAGGGGATACAGTATATAACATGTT TTAATTTGATAGGTTACAGTGGATACAGTATATAACATGTT < 41bp 0.503576702950544 0.795545506880322 NA NA prediction 0.583937607859556 Functional Gain - CWC27 ENSG00000153015 CDS Human protein_coding chr5:64081316 chr5:64081315 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_14591 0 0 0 0 2 CWC27 chr5:64081308 3'AG 64081308 Downstream 8bp 14022 chr5 64081315 64081315 1 + G T LUAD 64081316 + 64081296 64081336 41 TTAATTTGATAGGTTACAGGGGATACAGTATATAACATGTT TTAATTTGATAGGTTACAGTGGATACAGTATATAACATGTT < 41bp 0.503576702950544 0.795545506880322 NA NA prediction 0.583937607859556 Functional Gain - CWC27 ENSG00000153015 CDS Human protein_coding chr5:64081316 chr5:64081315 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_14591 0 0 0 0 2 CWC27 chr5:64081406 5'GT 64081406 Upstream 92bp 14023 chr2 220504222 220504222 1 + G T LUSC 220504223 + 220504203 220504243 41 GGCTTATCGTCAGCCAGAAGGCGCGGAGGCTGCTCAAGGGC GGCTTATCGTCAGCCAGAATGCGCGGAGGCTGCTCAAGGGC < 41bp 0.465802795314246 0.791964559014308 NA NA prediction 0.583929118028616 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220504223 chr2:220504222 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14592 0 0 0 0 1 SLC4A3 chr2:220504204 3'AG 220504204 Downstream 19bp 14024 chrX 118151596 118151596 1 + G T LUAD 118151597 + 118151577 118151617 41 TAGCAATGAGGTCCTTAAAGGACAGACTGAATGGTATTCGA TAGCAATGAGGTCCTTAAATGACAGACTGAATGGTATTCGA < 41bp 0.488547835010035 0.791959324884018 NA NA prediction 0.583918649768035 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118151597 chrX:118151596 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14593 0 0 1 0 1 LONRF3 chrX:118151498 3'AG 118151498 Downstream 99bp 14025 chr11 93862537 93862537 1 - C A OV 93862536 - 93862516 93862556 41 CTTGAACTTGGGCTCCGTGGGCTCCTTCAGCAAGAAATCCG CTTGAACTTGGGCTCCGTGTGCTCCTTCAGCAAGAAATCCG < 41bp 0.495073211824972 0.791959141189607 NA NA prediction 0.583918282379214 Functional Gain - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93862536 chr11:93862537 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_14594 0 0 0 0 1 PANX1 chr11:93862495 5'GT 93862495 Upstream 43bp 14026 chr15 97326909 97326909 1 + G T LUAD 97326910 + 97326890 97326930 41 CCCCGGCTGGGATGTCAGGGGCCCAGGACAACTCCTGTCTC CCCCGGCTGGGATGTCAGGTGCCCAGGACAACTCCTGTCTC < 41bp 0.498753699715627 0.791949151250444 NA NA prediction 0.583898302500889 Functional Gain - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97326910 chr15:97326909 synonymous SNV . 0 20 hm7G_associated_SNPs_14597 0 0 0 0 1 SPATA8;SPATA8 chr15:97326974 5'GT 97326974 Upstream 66bp 14027 chr17 26851931 26851931 1 + G T STAD 26851932 + 26851912 26851952 41 TGCCTGGCTTCTCAGCAGAGGCCTGGTGTAACGGGCTCCCC TGCCTGGCTTCTCAGCAGATGCCTGGTGTAACGGGCTCCCC < 41bp 0.546808237072975 0.838718269119545 NA NA prediction 0.58382006409314 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851932 chr17:26851931 nonsynonymous SNV 0.226 3 20 hm7G_associated_SNPs_14605 0 0 0 0 1 FOXN1 chr17:26851985 5'GT 26851985 Upstream 55bp 14028 chr1 46876099 46876099 1 + G T LUAD 46876100 + 46876080 46876120 41 TTCGTGGACCCCTGCCTGGGGGACCTGGTCTCAATTCTGAA TTCGTGGACCCCTGCCTGGTGGACCTGGTCTCAATTCTGAA < 41bp 0.55035339037629 0.842263305983685 NA NA prediction 0.58381983121479 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46876100 chr1:46876099 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_14606 0 0 0 0 2 FAAH chr1:46876070 3'AG 46876070 Downstream 30bp 14029 chr1 46876099 46876099 1 + G T LUAD 46876100 + 46876080 46876120 41 TTCGTGGACCCCTGCCTGGGGGACCTGGTCTCAATTCTGAA TTCGTGGACCCCTGCCTGGTGGACCTGGTCTCAATTCTGAA < 41bp 0.55035339037629 0.842263305983685 NA NA prediction 0.58381983121479 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46876100 chr1:46876099 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_14606 0 0 0 0 2 FAAH chr1:46876169 5'GT 46876169 Upstream 71bp 14030 chr17 60650587 60650587 1 + G T GBM 60650588 + 60650568 60650608 41 ATCTCTAGGCAACAGGAAAGGATAAATTCACAGAGGGAAGA ATCTCTAGGCAACAGGAAATGATAAATTCACAGAGGGAAGA < 41bp 0.519209349862797 0.811118128499856 NA NA prediction 0.583817557274119 Functional Gain - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60650588 chr17:60650587 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14607 0 0 1 0 1 TLK2 chr17:60650576 3'AG 60650576 Downstream 12bp 14031 chr17 42851905 42851905 1 + G T UCEC 42851906 + 42851886 42851926 41 GACCCTTGCCCAGACGCTGGGACAGAACCTGGGCATGATGT GACCCTTGCCCAGACGCTGTGACAGAACCTGGGCATGATGT < 41bp 0.549246847428097 0.841149992298881 NA NA prediction 0.583806289741569 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42851906 chr17:42851905 stopgain 0.999 1 20 hm7G_associated_SNPs_14608 0 0 1 0 2 ADAM11 chr17:42851860 3'AG 42851860 Downstream 46bp 14032 chr17 42851905 42851905 1 + G T UCEC 42851906 + 42851886 42851926 41 GACCCTTGCCCAGACGCTGGGACAGAACCTGGGCATGATGT GACCCTTGCCCAGACGCTGTGACAGAACCTGGGCATGATGT < 41bp 0.549246847428097 0.841149992298881 NA NA prediction 0.583806289741569 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42851906 chr17:42851905 stopgain 0.999 1 20 hm7G_associated_SNPs_14608 0 0 1 0 2 ADAM11 chr17:42851950 5'GT 42851950 Upstream 46bp 14033 chr2 231090572 231090572 1 + G T LUAD 231090573 + 231090553 231090593 41 CAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAGATGGCAA CAAGCTCATGGCCCAGCAGTGCCAGCAGGGGCAGATGGCAA < 41bp 0.498531196744917 0.791900660381008 NA NA prediction 0.583801320762016 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231090573 chr2:231090572 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_14610 0 0 0 0 1 SP140 chr2:231090618 5'GT 231090618 Upstream 47bp 14034 chr5 131927606 131927606 1 + G T UCEC 131927607 + 131927587 131927627 41 ATCAGAAAAATAAAATCTAGGCACAGTGATGAATTAACCTC ATCAGAAAAATAAAATCTATGCACAGTGATGAATTAACCTC < 41bp 0.498771051179224 0.791883410330429 NA NA prediction 0.583766820660859 Functional Gain - RAD50 ENSG00000113522 CDS Human protein_coding chr5:131927607 chr5:131927606 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14611 0 0 0 0 1 RAD50 chr5:131927569 3'AG 131927569 Downstream 38bp 14035 chr3 43073793 43073793 1 + G T UCEC 43073794 + 43073774 43073814 41 AGAAAGCTGCGTGGCAAGAGGCGGCCAGTGATAGCGTTCTG AGAAAGCTGCGTGGCAAGATGCGGCCAGTGATAGCGTTCTG < 41bp 0.476999359942569 0.791880575166213 NA NA prediction 0.583761150332426 Functional Gain - FAM198A ENSG00000144649 CDS Human other chr3:43073794 chr3:43073793 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_14612 0 0 0 0 1 FAM198A chr3:43073759 3'AG 43073759 Downstream 35bp 14036 chr9 136320428 136320428 1 + G T UCEC 136320429 + 136320409 136320449 41 CTCTGTTTCCTGTGGGGATGGCATCCAGCGCCGGCGTGACA CTCTGTTTCCTGTGGGGATTGCATCCAGCGCCGGCGTGACA < 41bp 0.477993581179027 0.791879888222841 NA NA prediction 0.583759776445681 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136320429 chr9:136320428 nonsynonymous SNV 0.716 4 20 hm7G_associated_SNPs_14613 0 0 0 0 1 ADAMTS13 chr9:136320407 3'AG 136320407 Downstream 22bp 14037 chr16 24192183 24192183 1 + G T UCEC 24192184 + 24192164 24192204 41 CCGATTTTGGCATGTGTAAGGAAAACATCTGGGATGGGGTG CCGATTTTGGCATGTGTAATGAAAACATCTGGGATGGGGTG < 41bp 0.510799532228481 0.80267078997634 NA NA prediction 0.58374251549572 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24192184 chr16:24192183 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14615 0 0 1 0 2 PRKCB chr16:24192111 3'AG 24192111 Downstream 73bp 14038 chr16 24192183 24192183 1 + G T UCEC 24192184 + 24192164 24192204 41 CCGATTTTGGCATGTGTAAGGAAAACATCTGGGATGGGGTG CCGATTTTGGCATGTGTAATGAAAACATCTGGGATGGGGTG < 41bp 0.510799532228481 0.80267078997634 NA NA prediction 0.58374251549572 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:24192184 chr16:24192183 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14615 0 0 1 0 2 PRKCB chr16:24192249 5'GT 24192249 Upstream 67bp 14039 chr2 171806224 171806224 1 + G T LUSC 171806225 + 171806205 171806245 41 CGTTTCTGCAGCTTTGATGGGGCAAATGAAAATGTTTGGCA CGTTTCTGCAGCTTTGATGTGGCAAATGAAAATGTTTGGCA < 41bp 0.538720853059759 0.830588870356477 NA NA prediction 0.583736034593435 Functional Gain - GORASP2 ENSG00000115806 CDS Human protein_coding chr2:171806225 chr2:171806224 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_14616 0 0 1 0 1 GORASP2 chr2:171806252 5'GT 171806252 Upstream 29bp 14040 chr15 67652185 67652185 1 + G T HNSC 67652186 + 67652166 67652206 41 GTCTCATTCTTCATTGTAGGGGAAAAGCAGAAGGTCAAGAG GTCTCATTCTTCATTGTAGTGGAAAAGCAGAAGGTCAAGAG < 41bp 0.511233615217223 0.803099880409614 NA NA prediction 0.583732530384783 Functional Gain - IQCH ENSG00000103599 CDS Human protein_coding chr15:67652186 chr15:67652185 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_14618 0 0 0 0 2 IQCH chr15:67652185 3'AG 67652185 Downstream 1bp 14041 chr15 67652185 67652185 1 + G T HNSC 67652186 + 67652166 67652206 41 GTCTCATTCTTCATTGTAGGGGAAAAGCAGAAGGTCAAGAG GTCTCATTCTTCATTGTAGTGGAAAAGCAGAAGGTCAAGAG < 41bp 0.511233615217223 0.803099880409614 NA NA prediction 0.583732530384783 Functional Gain - IQCH ENSG00000103599 CDS Human protein_coding chr15:67652186 chr15:67652185 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_14618 0 0 0 0 2 IQCH chr15:67652223 5'GT 67652223 Upstream 39bp 14042 chr1 205494290 205494290 1 + G T BRCA 205494291 + 205494271 205494311 41 ACATTGGCTTTGGGAAACTGGAAACATACGTGAAACTGGAC ACATTGGCTTTGGGAAACTTGAAACATACGTGAAACTGGAC < 41bp 0.547478646891339 0.839334595097935 NA NA prediction 0.583711896413192 Functional Gain - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205494291 chr1:205494290 synonymous SNV . 0 20 hm7G_associated_SNPs_14619 0 0 1 0 2 CDK18 chr1:205494267 3'AG 205494267 Downstream 24bp 14043 chr1 205494290 205494290 1 + G T BRCA 205494291 + 205494271 205494311 41 ACATTGGCTTTGGGAAACTGGAAACATACGTGAAACTGGAC ACATTGGCTTTGGGAAACTTGAAACATACGTGAAACTGGAC < 41bp 0.547478646891339 0.839334595097935 NA NA prediction 0.583711896413192 Functional Gain - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205494291 chr1:205494290 synonymous SNV . 0 20 hm7G_associated_SNPs_14619 0 0 1 0 2 CDK18 chr1:205494323 5'GT 205494323 Upstream 34bp 14044 chr19 53007993 53007993 1 + G T UCEC 53007994 + 53007974 53008014 41 GCGCAGAGGGCTTTGTACAGGGAAGTGATGTTGGAGAACTA GCGCAGAGGGCTTTGTACATGGAAGTGATGTTGGAGAACTA < 41bp 0.472955027506322 0.791850941449663 NA NA prediction 0.583701882899326 Functional Gain - ZNF578 ENSG00000258405 CDS Human protein_coding chr19:53007994 chr19:53007993 nonsynonymous SNV 0.012 1 20 hm7G_associated_SNPs_14621 0 0 0 0 2 ZNF578 chr19:53007908 3'AG 53007908 Downstream 86bp 14045 chr19 53007993 53007993 1 + G T UCEC 53007994 + 53007974 53008014 41 GCGCAGAGGGCTTTGTACAGGGAAGTGATGTTGGAGAACTA GCGCAGAGGGCTTTGTACATGGAAGTGATGTTGGAGAACTA < 41bp 0.472955027506322 0.791850941449663 NA NA prediction 0.583701882899326 Functional Gain - ZNF578 ENSG00000258405 CDS Human protein_coding chr19:53007994 chr19:53007993 nonsynonymous SNV 0.012 1 20 hm7G_associated_SNPs_14621 0 0 0 0 2 ZNF578 chr19:53008034 5'GT 53008034 Upstream 42bp 14046 chr12 81627218 81627218 1 + G T LUSC 81627219 + 81627199 81627239 41 TGATGTAATAAATGTTGCAGGTCACAGAATTTCTGCAGGCG TGATGTAATAAATGTTGCATGTCACAGAATTTCTGCAGGCG < 41bp 0.490141290906539 0.791843502979038 NA NA prediction 0.583687005958076 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81627219 chr12:81627218 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14623 0 0 1 0 2 ACSS3 chr12:81627128 3'AG 81627128 Downstream 91bp 14047 chr12 81627218 81627218 1 + G T LUSC 81627219 + 81627199 81627239 41 TGATGTAATAAATGTTGCAGGTCACAGAATTTCTGCAGGCG TGATGTAATAAATGTTGCATGTCACAGAATTTCTGCAGGCG < 41bp 0.490141290906539 0.791843502979038 NA NA prediction 0.583687005958076 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81627219 chr12:81627218 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14623 0 0 1 0 2 ACSS3 chr12:81627250 5'GT 81627250 Upstream 33bp 14048 chr5 139907503 139907503 1 + G T LUSC 139907504 + 139907484 139907524 41 CAGTGGTGTCGAGGATAATGGGAAGAGGAGGATGCAACATC CAGTGGTGTCGAGGATAATTGGAAGAGGAGGATGCAACATC < 41bp 0.475880476517459 0.791843183869156 NA NA prediction 0.583686367738312 Functional Gain - ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139907504 chr5:139907503 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_14624 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139907458 3'AG 139907458 Downstream 46bp 14049 chr20 2843379 2843379 1 + G T LUAD 2843380 + 2843360 2843400 41 GGCCTGGATGGCCGGGCCGGGGAGGGTGGGGCTGGGAGGGG GGCCTGGATGGCCGGGCCGTGGAGGGTGGGGCTGGGAGGGG < 41bp 0.471932376945463 0.791840147440487 NA NA prediction 0.583680294880974 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843380 chr20:2843379 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_14625 0 0 0 0 1 VPS16 chr20:2843356 3'AG 2843356 Downstream 24bp 14050 chr10 44141542 44141542 1 - C A UCEC 44141541 - 44141521 44141561 41 TACCCTGCTGGACTGTCATGGAAGATATGCCCAGAATGTAG TACCCTGCTGGACTGTCATTGAAGATATGCCCAGAATGTAG < 41bp 0.48282088513856 0.791828603329823 NA NA prediction 0.583657206659646 Functional Gain - ZNF32 ENSG00000169740 CDS Human protein_coding chr10:44141541 chr10:44141542 stopgain 1.000 1 20 hm7G_associated_SNPs_14626 0 0 1 0 1 ZNF32 chr10:44141512 5'GT 44141512 Upstream 31bp 14051 chr11 46745004 46745004 1 + G T COAD 46745005 + 46744985 46745025 41 ACCCCGACAGCAGCACCACGGGACCCTGGTGCTACACTACA ACCCCGACAGCAGCACCACTGGACCCTGGTGCTACACTACA < 41bp 0.561583249588289 0.853399160367557 NA NA prediction 0.583631821558535 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46745005 chr11:46745004 synonymous SNV . 0 20 hm7G_associated_SNPs_14628 0 0 1 4 2 F2 chr11:46744932 3'AG 46744932 Downstream 73bp 14052 chr11 46745004 46745004 1 + G T COAD 46745005 + 46744985 46745025 41 ACCCCGACAGCAGCACCACGGGACCCTGGTGCTACACTACA ACCCCGACAGCAGCACCACTGGACCCTGGTGCTACACTACA < 41bp 0.561583249588289 0.853399160367557 NA NA prediction 0.583631821558535 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46745005 chr11:46745004 synonymous SNV . 0 20 hm7G_associated_SNPs_14628 0 0 1 4 2 F2 chr11:46745068 5'GT 46745068 Upstream 65bp 14053 chr2 128393812 128393812 1 + G T GBM 128393813 + 128393793 128393833 41 TAGCCTATGACAAGCATAAGGACAAGACAGTGGAGGAGGCC TAGCCTATGACAAGCATAATGACAAGACAGTGGAGGAGGCC < 41bp 0.544596737453985 0.836390596478601 NA NA prediction 0.583587718049232 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128393813 chr2:128393812 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_14631 0 0 0 0 2 MYO7B chr2:128393783 3'AG 128393783 Downstream 30bp 14054 chr2 128393812 128393812 1 + G T GBM 128393813 + 128393793 128393833 41 TAGCCTATGACAAGCATAAGGACAAGACAGTGGAGGAGGCC TAGCCTATGACAAGCATAATGACAAGACAGTGGAGGAGGCC < 41bp 0.544596737453985 0.836390596478601 NA NA prediction 0.583587718049232 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128393813 chr2:128393812 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_14631 0 0 0 0 2 MYO7B chr2:128393899 5'GT 128393899 Upstream 88bp 14055 chr6 26506926 26506926 1 + G T COAD 26506927 + 26506907 26506947 41 TTAGCTTCCTCCCTCCCAAGGCTGACTCCCTGGATAGTGGC TTAGCTTCCTCCCTCCCAATGCTGACTCCCTGGATAGTGGC < 41bp 0.529505016657848 0.821297166124316 NA NA prediction 0.583584298932935 Functional Gain - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26506927 chr6:26506926 nonsynonymous SNV 0.010 1 20 hm7G_associated_SNPs_14632 0 0 0 0 1 BTN1A1 chr6:26506911 3'AG 26506911 Downstream 16bp 14056 chr19 2796158 2796158 1 + G T GBM 2796159 + 2796139 2796179 41 AAGCTGGGCCGGAGAAATGGGCTTCACCTCCCCAGAGAGAC AAGCTGGGCCGGAGAAATGTGCTTCACCTCCCCAGAGAGAC < 41bp 0.453710259001039 0.791740386307655 NA NA prediction 0.58348077261531 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2796159 chr19:2796158 nonsynonymous SNV 0.071 4 20 hm7G_associated_SNPs_14634 0 0 1 0 2 THOP1 chr19:2796079 3'AG 2796079 Downstream 80bp 14057 chr19 2796158 2796158 1 + G T GBM 2796159 + 2796139 2796179 41 AAGCTGGGCCGGAGAAATGGGCTTCACCTCCCCAGAGAGAC AAGCTGGGCCGGAGAAATGTGCTTCACCTCCCCAGAGAGAC < 41bp 0.453710259001039 0.791740386307655 NA NA prediction 0.58348077261531 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2796159 chr19:2796158 nonsynonymous SNV 0.071 4 20 hm7G_associated_SNPs_14634 0 0 1 0 2 THOP1 chr19:2796186 5'GT 2796186 Upstream 29bp 14058 chr10 99416696 99416696 1 + G T CESC 99416697 + 99416677 99416717 41 CTACTGCTCCAGTTTGAGCGGTTGGTGGTGCTGGATTACAT CTACTGCTCCAGTTTGAGCTGTTGGTGGTGCTGGATTACAT < 41bp 0.534843385224198 0.826576624122376 NA NA prediction 0.583466477796354 Functional Gain - PI4K2A ENSG00000155252;ENSG00000249967 CDS Human other chr10:99416697 chr10:99416696 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_14635 0 0 1 0 1 PI4K2A chr10:99416731 5'GT 99416731 Upstream 36bp 14059 chr3 14963439 14963439 1 + G T UCEC 14963440 + 14963420 14963460 41 CGCAGCTCCTGTGCAGAGAGGGACGAGTGGTATGGCTGTCT CGCAGCTCCTGTGCAGAGATGGACGAGTGGTATGGCTGTCT < 41bp 0.551562050392014 0.84328765725237 NA NA prediction 0.583451213720711 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14963440 chr3:14963439 nonsynonymous SNV 0.837 3 20 hm7G_associated_SNPs_14637 0 0 0 0 2 FGD5 chr3:14963425 3'AG 14963425 Downstream 15bp 14060 chr3 14963439 14963439 1 + G T UCEC 14963440 + 14963420 14963460 41 CGCAGCTCCTGTGCAGAGAGGGACGAGTGGTATGGCTGTCT CGCAGCTCCTGTGCAGAGATGGACGAGTGGTATGGCTGTCT < 41bp 0.551562050392014 0.84328765725237 NA NA prediction 0.583451213720711 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14963440 chr3:14963439 nonsynonymous SNV 0.837 3 20 hm7G_associated_SNPs_14637 0 0 0 0 2 FGD5 chr3:14963524 5'GT 14963524 Upstream 86bp 14061 chr2 202672664 202672664 1 + G T UCEC 202672665 + 202672645 202672685 41 CTTATGCGACAGTTTACAAGGGGATTAGCAGGTGAGTGACA CTTATGCGACAGTTTACAATGGGATTAGCAGGTGAGTGACA < 41bp 0.480349383317646 0.791721362067213 NA NA prediction 0.583442724134426 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202672665 chr2:202672664 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14639 0 0 0 0 3 CDK15 chr2:202672576 3'AG 202672576 Downstream 89bp 14062 chr2 202672664 202672664 1 + G T UCEC 202672665 + 202672645 202672685 41 CTTATGCGACAGTTTACAAGGGGATTAGCAGGTGAGTGACA CTTATGCGACAGTTTACAATGGGATTAGCAGGTGAGTGACA < 41bp 0.480349383317646 0.791721362067213 NA NA prediction 0.583442724134426 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202672665 chr2:202672664 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14639 0 0 0 0 3 CDK15 chr2:202672581 3'AG 202672581 Downstream 84bp 14063 chr2 202672664 202672664 1 + G T UCEC 202672665 + 202672645 202672685 41 CTTATGCGACAGTTTACAAGGGGATTAGCAGGTGAGTGACA CTTATGCGACAGTTTACAATGGGATTAGCAGGTGAGTGACA < 41bp 0.480349383317646 0.791721362067213 NA NA prediction 0.583442724134426 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202672665 chr2:202672664 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14639 0 0 0 0 3 CDK15 chr2:202672675 5'GT 202672675 Upstream 12bp 14064 chr7 19184524 19184524 1 + G T LUSC 19184525 + 19184505 19184545 41 CACAGCTCTCCAAGAGCTCGGTCATGAAGGAGATATAGACG CACAGCTCTCCAAGAGCTCTGTCATGAAGGAGATATAGACG < 41bp 0.497623098818752 0.791712259993025 NA NA prediction 0.58342451998605 Functional Gain - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184525 chr7:19184524 synonymous SNV . 0 20 hm7G_associated_SNPs_14640 0 0 0 0 1 FERD3L chr7:19184510 3'AG 19184510 Downstream 15bp 14065 chr15 73029105 73029105 1 + G T SARC 73029106 + 73029086 73029126 41 TCCTTTGTGGACACAAGATGGTGGAGATGGCTCAGAAGTTG TCCTTTGTGGACACAAGATTGTGGAGATGGCTCAGAAGTTG < 41bp 0.516804209262767 0.808498943417078 NA NA prediction 0.583389468308622 Functional Gain - BBS4 ENSG00000140463 CDS Human protein_coding chr15:73029106 chr15:73029105 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_14642 0 0 1 0 1 BBS4 chr15:73029103 3'AG 73029103 Downstream 3bp 14066 chr1 230820885 230820885 1 + G T UCEC 230820886 + 230820866 230820906 41 ACTTGGAGCAGCCTTAGGAGGTGTTGGTCAGATGAGATGTT ACTTGGAGCAGCCTTAGGATGTGTTGGTCAGATGAGATGTT < 41bp 0.534477244630347 0.826167330373965 NA NA prediction 0.583380171487236 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230820886 chr1:230820885 nonsynonymous SNV 0.073 1 20 hm7G_associated_SNPs_14644 0 0 1 0 2 COG2 chr1:230820831 3'AG 230820831 Downstream 55bp 14067 chr1 230820885 230820885 1 + G T UCEC 230820886 + 230820866 230820906 41 ACTTGGAGCAGCCTTAGGAGGTGTTGGTCAGATGAGATGTT ACTTGGAGCAGCCTTAGGATGTGTTGGTCAGATGAGATGTT < 41bp 0.534477244630347 0.826167330373965 NA NA prediction 0.583380171487236 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230820886 chr1:230820885 nonsynonymous SNV 0.073 1 20 hm7G_associated_SNPs_14644 0 0 1 0 2 COG2 chr1:230820982 5'GT 230820982 Upstream 98bp 14068 chr6 108501583 108501583 1 + G T LUAD 108501584 + 108501564 108501604 41 TTCTAGGAATAGCACAATGGGCCATTCCGGTTGATGCTAAC TTCTAGGAATAGCACAATGTGCCATTCCGGTTGATGCTAAC < 41bp 0.543347307055066 0.83501684703539 NA NA prediction 0.583339079960649 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108501584 chr6:108501583 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14646 0 0 0 0 2 NR2E1 chr6:108501527 3'AG 108501527 Downstream 57bp 14069 chr6 108501583 108501583 1 + G T LUAD 108501584 + 108501564 108501604 41 TTCTAGGAATAGCACAATGGGCCATTCCGGTTGATGCTAAC TTCTAGGAATAGCACAATGTGCCATTCCGGTTGATGCTAAC < 41bp 0.543347307055066 0.83501684703539 NA NA prediction 0.583339079960649 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108501584 chr6:108501583 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14646 0 0 0 0 2 NR2E1 chr6:108501623 5'GT 108501623 Upstream 41bp 14070 chr2 131803000 131803000 1 + G T LGG 131803001 + 131802981 131803021 41 TGAATGCCAGCAAGCAGCAGGTCACAGGGAAGCCCAAAGGT TGAATGCCAGCAAGCAGCATGTCACAGGGAAGCCCAAAGGT < 41bp 0.485657397809559 0.791666432782404 NA NA prediction 0.583332865564807 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131803001 chr2:131803000 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_14647 0 0 0 0 2 ARHGEF4 chr2:131802942 3'AG 131802942 Downstream 59bp 14071 chr2 131803000 131803000 1 + G T LGG 131803001 + 131802981 131803021 41 TGAATGCCAGCAAGCAGCAGGTCACAGGGAAGCCCAAAGGT TGAATGCCAGCAAGCAGCATGTCACAGGGAAGCCCAAAGGT < 41bp 0.485657397809559 0.791666432782404 NA NA prediction 0.583332865564807 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131803001 chr2:131803000 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_14647 0 0 0 0 2 ARHGEF4 chr2:131803019 5'GT 131803019 Upstream 20bp 14072 chr21 38877665 38877665 1 + G T SARC 38877666 + 38877646 38877686 41 CCTGGTGGGCGACGTGCTGGGGAGTCAGGTCATACGGTCGC CCTGGTGGGCGACGTGCTGTGGAGTCAGGTCATACGGTCGC < 41bp 0.5153274331893 0.806993366215519 NA NA prediction 0.583331866052438 Functional Gain - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38877666 chr21:38877665 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14648 0 0 1 0 1 DYRK1A chr21:38877586 3'AG 38877586 Downstream 80bp 14073 chr2 148680601 148680601 1 + G T GBM 148680602 + 148680582 148680622 41 GTGCTATAAACTTCCAAAGGGATGCATTTTTGAGGATAGAT GTGCTATAAACTTCCAAAGTGATGCATTTTTGAGGATAGAT < 41bp 0.527032624840261 0.818698200591605 NA NA prediction 0.583331151502688 Functional Gain - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148680602 chr2:148680601 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14649 0 0 0 0 2 ACVR2A chr2:148680542 3'AG 148680542 Downstream 60bp 14074 chr2 148680601 148680601 1 + G T GBM 148680602 + 148680582 148680622 41 GTGCTATAAACTTCCAAAGGGATGCATTTTTGAGGATAGAT GTGCTATAAACTTCCAAAGTGATGCATTTTTGAGGATAGAT < 41bp 0.527032624840261 0.818698200591605 NA NA prediction 0.583331151502688 Functional Gain - ACVR2A ENSG00000121989 CDS Human protein_coding chr2:148680602 chr2:148680601 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14649 0 0 0 0 2 ACVR2A chr2:148680680 5'GT 148680680 Upstream 80bp 14075 chr6 18197331 18197331 1 + G T UCEC 18197332 + 18197312 18197352 41 ATTCCTCACATCATCGTCCGGGGTCTCGTGCGTATTCGATG ATTCCTCACATCATCGTCCTGGGTCTCGTGCGTATTCGATG < 41bp 0.469412279473576 0.791658622302426 NA NA prediction 0.583317244604852 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18197332 chr6:18197331 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14651 0 0 0 0 1 KDM1B chr6:18197288 3'AG 18197288 Downstream 44bp 14076 chr1 114449765 114449765 1 + G T LUSC 114449766 + 114449746 114449786 41 TCTCTTTGAAGGATATTTTGGAACCATCCTCTACACAGGTG TCTCTTTGAAGGATATTTTTGAACCATCCTCTACACAGGTG < 41bp 0.485505696834421 0.791653011654677 NA NA prediction 0.583306023309353 Functional Gain - DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114449766 chr1:114449765 stopgain 0.997 1 20 hm7G_associated_SNPs_14653 0 0 1 0 1 DCLRE1B chr1:114449783 5'GT 114449783 Upstream 19bp 14077 chr13 113909007 113909007 1 + G T THCA 113909008 + 113908988 113909028 41 ATGAGGCCTTCTCTTCCAGGGGAAGAAGGAATTCCAGGTGT ATGAGGCCTTCTCTTCCAGTGGAAGAAGGAATTCCAGGTGT < 41bp 0.474430911717986 0.791650423460306 NA NA prediction 0.583300846920612 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113909008 chr13:113909007 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_14655 0 0 1 0 1 CUL4A chr13:113909007 3'AG 113909007 Downstream 1bp 14078 chr1 206730943 206730943 1 + G T LIHC 206730944 + 206730924 206730964 41 GCAGTGGGTACTGCAGCCTGGACGAGGAACTGGAAGACTGC GCAGTGGGTACTGCAGCCTTGACGAGGAACTGGAAGACTGC < 41bp 0.494890772433266 0.791642452311556 NA NA prediction 0.583284904623111 Functional Gain - RASSF5 ENSG00000136653 CDS Human other chr1:206730944 chr1:206730943 synonymous SNV . 0 20 hm7G_associated_SNPs_14656 0 0 0 0 1 RASSF5 chr1:206731021 5'GT 206731021 Upstream 79bp 14079 chr10 103296399 103296399 1 + G T COAD 103296400 + 103296380 103296420 41 ACAAGAGGATAGTCAGTGGGGCCTATGATGGGTGAGTGTGC ACAAGAGGATAGTCAGTGGTGCCTATGATGGGTGAGTGTGC < 41bp 0.534686546961224 0.826319329409626 NA NA prediction 0.583265564896805 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103296400 chr10:103296399 synonymous SNV . 0 20 hm7G_associated_SNPs_14657 0 0 1 0 2 BTRC chr10:103296300 3'AG 103296300 Downstream 100bp 14080 chr10 103296399 103296399 1 + G T COAD 103296400 + 103296380 103296420 41 ACAAGAGGATAGTCAGTGGGGCCTATGATGGGTGAGTGTGC ACAAGAGGATAGTCAGTGGTGCCTATGATGGGTGAGTGTGC < 41bp 0.534686546961224 0.826319329409626 NA NA prediction 0.583265564896805 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103296400 chr10:103296399 synonymous SNV . 0 20 hm7G_associated_SNPs_14657 0 0 1 0 2 BTRC chr10:103296410 5'GT 103296410 Upstream 12bp 14081 chr9 71098829 71098829 1 + G T HNSC 71098830 + 71098810 71098850 41 CGACATATTATATCATGAGGGACCTGGAGGCCCTGGTCACA CGACATATTATATCATGAGTGACCTGGAGGCCCTGGTCACA < 41bp 0.532237249825745 0.823869912075938 NA NA prediction 0.583265324500387 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71098830 chr9:71098829 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14658 0 0 0 0 1 PGM5 chr9:71098781 3'AG 71098781 Downstream 49bp 14082 chr20 31828125 31828125 1 + G T GBM 31828126 + 31828106 31828146 41 GTGAGAGATAAGCAGGAGAGGATCCACCTGGTCCTTGGTGA GTGAGAGATAAGCAGGAGATGATCCACCTGGTCCTTGGTGA < 41bp 0.542857170323886 0.834486230945617 NA NA prediction 0.583258121243463 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31828126 chr20:31828125 nonsynonymous SNV 0.081 2 20 hm7G_associated_SNPs_14660 0 0 0 0 2 BPIFA1 chr20:31828039 3'AG 31828039 Downstream 87bp 14083 chr20 31828125 31828125 1 + G T GBM 31828126 + 31828106 31828146 41 GTGAGAGATAAGCAGGAGAGGATCCACCTGGTCCTTGGTGA GTGAGAGATAAGCAGGAGATGATCCACCTGGTCCTTGGTGA < 41bp 0.542857170323886 0.834486230945617 NA NA prediction 0.583258121243463 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31828126 chr20:31828125 nonsynonymous SNV 0.081 2 20 hm7G_associated_SNPs_14660 0 0 0 0 2 BPIFA1 chr20:31828191 5'GT 31828191 Upstream 67bp 14084 chr19 54403953 54403953 1 + G T LUSC 54403954 + 54403934 54403974 41 TAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACCTTCT TAAGGAGAACGTCTTCCCCTGGACGACAACCCGCACCTTCT < 41bp 0.553791532612036 0.845417672859681 NA NA prediction 0.58325228049529 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403954 chr19:54403953 nonsynonymous SNV 0.295 3 20 hm7G_associated_SNPs_14661 0 0 0 0 2 PRKCG chr19:54403865 3'AG 54403865 Downstream 89bp 14085 chr19 54403953 54403953 1 + G T LUSC 54403954 + 54403934 54403974 41 TAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACCTTCT TAAGGAGAACGTCTTCCCCTGGACGACAACCCGCACCTTCT < 41bp 0.553791532612036 0.845417672859681 NA NA prediction 0.58325228049529 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403954 chr19:54403953 nonsynonymous SNV 0.295 3 20 hm7G_associated_SNPs_14661 0 0 0 0 2 PRKCG chr19:54404003 5'GT 54404003 Upstream 51bp 14086 chr7 128441554 128441554 1 + G T LIHC 128441555 + 128441535 128441575 41 AGGTCTCTCAGATTACTCTGGGTTACAAGGTATGAGAGCCA AGGTCTCTCAGATTACTCTTGGTTACAAGGTATGAGAGCCA < 41bp 0.55096473834072 0.842588992229177 NA NA prediction 0.583248507776915 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128441555 chr7:128441554 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_14663 0 0 0 0 1 CCDC136 chr7:128441563 5'GT 128441563 Upstream 10bp 14087 chr19 36350399 36350399 1 + G T LUAD 36350400 + 36350380 36350420 41 CAGACCCTGCTGAAGGAAGGGACCCCTGGGTCAGTGGAGAG CAGACCCTGCTGAAGGAAGTGACCCCTGGGTCAGTGGAGAG < 41bp 0.548332270166908 0.839946303748124 NA NA prediction 0.583228067162432 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36350400 chr19:36350399 nonsynonymous SNV 0.242 2 20 hm7G_associated_SNPs_14666 0 0 0 0 1 KIRREL2 chr19:36350383 3'AG 36350383 Downstream 17bp 14088 chr16 27356218 27356218 1 + G T LUAD 27356219 + 27356199 27356239 41 GTGTATCCCTGAGAACAACGGAGGCGCGGGGTGCGTGTGCC GTGTATCCCTGAGAACAACTGAGGCGCGGGGTGCGTGTGCC < 41bp 0.546481110709619 0.838070621794413 NA NA prediction 0.583179022169589 Functional Gain - IL4R ENSG00000077238 CDS Human protein_coding chr16:27356219 chr16:27356218 stopgain 0.001 0 20 hm7G_associated_SNPs_14668 0 0 0 0 1 IL4R chr16:27356190 3'AG 27356190 Downstream 29bp 14089 chrX 154317576 154317576 1 + G T UCEC 154317577 + 154317557 154317597 41 GTACCAGATGATGGATCAAGGCTTTGTAGGACTTATTTTTT GTACCAGATGATGGATCAATGCTTTGTAGGACTTATTTTTT < 41bp 0.520544938076765 0.812132413741484 NA NA prediction 0.583174951329437 Functional Gain - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154317577 chrX:154317576 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14670 0 0 0 0 2 BRCC3 chrX:154317538 3'AG 154317538 Downstream 39bp 14090 chrX 154317576 154317576 1 + G T UCEC 154317577 + 154317557 154317597 41 GTACCAGATGATGGATCAAGGCTTTGTAGGACTTATTTTTT GTACCAGATGATGGATCAATGCTTTGTAGGACTTATTTTTT < 41bp 0.520544938076765 0.812132413741484 NA NA prediction 0.583174951329437 Functional Gain - BRCC3 ENSG00000185515 CDS Human protein_coding chrX:154317577 chrX:154317576 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14670 0 0 0 0 2 BRCC3 chrX:154317626 5'GT 154317626 Upstream 51bp 14091 chrX 133549058 133549058 1 + G T LUSC 133549059 + 133549039 133549079 41 TCTCTAGTTGTTTTCTTCTGGCACAGTCCAGCTCACAACAA TCTCTAGTTGTTTTCTTCTTGCACAGTCCAGCTCACAACAA < 41bp 0.49168496971517 0.791580992145644 NA NA prediction 0.583161984291288 Functional Gain - PHF6 ENSG00000156531 CDS Human protein_coding chrX:133549059 chrX:133549058 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14672 0 0 1 0 2 PHF6 chrX:133549046 3'AG 133549046 Downstream 13bp 14092 chrX 133549058 133549058 1 + G T LUSC 133549059 + 133549039 133549079 41 TCTCTAGTTGTTTTCTTCTGGCACAGTCCAGCTCACAACAA TCTCTAGTTGTTTTCTTCTTGCACAGTCCAGCTCACAACAA < 41bp 0.49168496971517 0.791580992145644 NA NA prediction 0.583161984291288 Functional Gain - PHF6 ENSG00000156531 CDS Human protein_coding chrX:133549059 chrX:133549058 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14672 0 0 1 0 2 PHF6 chrX:133549150 5'GT 133549150 Upstream 93bp 14093 chr20 36022344 36022344 1 + G T UCEC 36022345 + 36022325 36022365 41 GCTCAGCACAGGACAGACAGGCTACATCCCCAGCAACTACG GCTCAGCACAGGACAGACATGCTACATCCCCAGCAACTACG < 41bp 0.567459031920713 0.859025855007827 NA NA prediction 0.583133646174228 Functional Gain - SRC ENSG00000197122 CDS Human protein_coding chr20:36022345 chr20:36022344 nonsynonymous SNV 0.985 5 20 hm7G_associated_SNPs_14674 0 0 0 0 2 SRC chr20:36022298 3'AG 36022298 Downstream 47bp 14094 chr20 36022344 36022344 1 + G T UCEC 36022345 + 36022325 36022365 41 GCTCAGCACAGGACAGACAGGCTACATCCCCAGCAACTACG GCTCAGCACAGGACAGACATGCTACATCCCCAGCAACTACG < 41bp 0.567459031920713 0.859025855007827 NA NA prediction 0.583133646174228 Functional Gain - SRC ENSG00000197122 CDS Human protein_coding chr20:36022345 chr20:36022344 nonsynonymous SNV 0.985 5 20 hm7G_associated_SNPs_14674 0 0 0 0 2 SRC chr20:36022396 5'GT 36022396 Upstream 53bp 14095 chr7 150839679 150839679 1 + G T COAD 150839680 + 150839660 150839700 41 GCCAACAGCGTCTGGGAGGGGGCCTTGGGTGGCTACTCCAA GCCAACAGCGTCTGGGAGGTGGCCTTGGGTGGCTACTCCAA < 41bp 0.462674048641881 0.791548789869384 NA NA prediction 0.583097579738767 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150839680 chr7:150839679 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14676 0 0 1 0 1 AGAP3 chr7:150839721 5'GT 150839721 Upstream 43bp 14096 chr5 134235226 134235226 1 + G T UCEC 134235227 + 134235207 134235247 41 AACTCAAGCCGACCAAATAGGCCCTCTTCCCAGCACTTTGA AACTCAAGCCGACCAAATATGCCCTCTTCCCAGCACTTTGA < 41bp 0.507554132677324 0.799071040743271 NA NA prediction 0.583033816131893 Functional Gain - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134235227 chr5:134235226 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14678 0 0 1 20 1 TXNDC15 chr5:134235179 3'AG 134235179 Downstream 48bp 14097 chr3 46944114 46944114 1 + G T LUSC 46944115 + 46944095 46944135 41 GAGGTCTCAGGGACGCTCTGGCAAGTCCAGATGCACTATGA GAGGTCTCAGGGACGCTCTTGCAAGTCCAGATGCACTATGA < 41bp 0.547738420456928 0.839245334516205 NA NA prediction 0.583013828118554 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46944115 chr3:46944114 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_14680 0 0 1 0 2 PTH1R chr3:46944016 3'AG 46944016 Downstream 99bp 14098 chr3 46944114 46944114 1 + G T LUSC 46944115 + 46944095 46944135 41 GAGGTCTCAGGGACGCTCTGGCAAGTCCAGATGCACTATGA GAGGTCTCAGGGACGCTCTTGCAAGTCCAGATGCACTATGA < 41bp 0.547738420456928 0.839245334516205 NA NA prediction 0.583013828118554 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46944115 chr3:46944114 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_14680 0 0 1 0 2 PTH1R chr3:46944157 5'GT 46944157 Upstream 44bp 14099 chr20 2411632 2411632 1 + G T LUAD 2411633 + 2411613 2411653 41 TGAAGGACTGTGCGCTGATGGTGGAGGGCAGCGGCCTTCTC TGAAGGACTGTGCGCTGATTGTGGAGGGCAGCGGCCTTCTC < 41bp 0.48064938333222 0.791506265818503 NA NA prediction 0.583012531637005 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2411633 chr20:2411632 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_14681 0 0 0 0 2 TGM6 chr20:2411540 3'AG 2411540 Downstream 93bp 14100 chr20 2411632 2411632 1 + G T LUAD 2411633 + 2411613 2411653 41 TGAAGGACTGTGCGCTGATGGTGGAGGGCAGCGGCCTTCTC TGAAGGACTGTGCGCTGATTGTGGAGGGCAGCGGCCTTCTC < 41bp 0.48064938333222 0.791506265818503 NA NA prediction 0.583012531637005 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2411633 chr20:2411632 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_14681 0 0 0 0 2 TGM6 chr20:2411673 5'GT 2411673 Upstream 42bp 14101 chr3 52820380 52820380 1 + G T COAD 52820381 + 52820361 52820401 41 GAAACTGCTCCGAGAGCGTGGCCACATGCTGGAGAACCACG GAAACTGCTCCGAGAGCGTTGCCACATGCTGGAGAACCACG < 41bp 0.570678970246264 0.862184374176149 NA NA prediction 0.583010807859771 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52820381 chr3:52820380 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_14682 0 0 0 0 2 ITIH1 chr3:52820311 3'AG 52820311 Downstream 70bp 14102 chr3 52820380 52820380 1 + G T COAD 52820381 + 52820361 52820401 41 GAAACTGCTCCGAGAGCGTGGCCACATGCTGGAGAACCACG GAAACTGCTCCGAGAGCGTTGCCACATGCTGGAGAACCACG < 41bp 0.570678970246264 0.862184374176149 NA NA prediction 0.583010807859771 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52820381 chr3:52820380 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_14682 0 0 0 0 2 ITIH1 chr3:52820450 5'GT 52820450 Upstream 71bp 14103 chr20 2597749 2597749 1 + G T OV 2597750 + 2597730 2597770 41 CTATGCTCCAGGCCTGGTGGGCATTAATGTGCTGCGCCTGC CTATGCTCCAGGCCTGGTGTGCATTAATGTGCTGCGCCTGC < 41bp 0.5451826343582 0.836672778797781 NA NA prediction 0.582980288879161 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2597750 chr20:2597749 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14683 0 0 0 0 1 TMC2 chr20:2597718 3'AG 2597718 Downstream 32bp 14104 chr17 74464954 74464954 1 + G T STAD 74464955 + 74464935 74464975 41 AGTTTCGCTGCCTCACCCCGGAGGACGCTGTCAGCGCCTTT AGTTTCGCTGCCTCACCCCTGAGGACGCTGTCAGCGCCTTT < 41bp 0.553818628218775 0.84529107658785 NA NA prediction 0.58294489673815 Functional Gain - AANAT ENSG00000129673 CDS Human protein_coding chr17:74464955 chr17:74464954 synonymous SNV . 0 20 hm7G_associated_SNPs_14684 0 0 0 0 1 AANAT chr17:74464991 5'GT 74464991 Upstream 38bp 14105 chr11 117261501 117261501 1 + G T LUAD 117261502 + 117261482 117261522 41 TTCCATCTCAGTTCCTTGAGGGAGCGGCTGCAGAAAGCCAT TTCCATCTCAGTTCCTTGATGGAGCGGCTGCAGAAAGCCAT < 41bp 0.542122539516124 0.833585107598192 NA NA prediction 0.582925136164136 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117261502 chr11:117261501 nonsynonymous SNV 0.151 1 20 hm7G_associated_SNPs_14685 0 0 0 0 1 CEP164 chr11:117261493 3'AG 117261493 Downstream 9bp 14106 chr14 88895778 88895778 1 + G T LUAD 88895779 + 88895759 88895799 41 CAACATGGGATGAGATTAAGGATGATGCTCTTCAGCATTCC CAACATGGGATGAGATTAATGATGATGCTCTTCAGCATTCC < 41bp 0.479486985570434 0.791449719916663 NA NA prediction 0.582899439833325 Functional Gain - SPATA7 ENSG00000042317 CDS Human protein_coding chr14:88895779 chr14:88895778 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_14686 0 0 0 0 1 SPATA7 chr14:88895807 5'GT 88895807 Upstream 30bp 14107 chr5 181681 181681 1 + G T LUSC 181682 + 181662 181702 41 TAGGCAACCAGCCATTCATGGATGTCAAGCCCAGAGACCGG TAGGCAACCAGCCATTCATTGATGTCAAGCCCAGAGACCGG < 41bp 0.469848140477153 0.791437395767181 NA NA prediction 0.582874791534361 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:181682 chr5:181681 nonsynonymous SNV 0.075 0 20 hm7G_associated_SNPs_14687 0 0 0 0 1 PLEKHG4B chr5:181629 3'AG 181629 Downstream 53bp 14108 chr1 165677979 165677979 1 + G T UCEC 165677980 + 165677960 165678000 41 TTGAGTGAGGCCGCTCAGAGGCCTCAGGGCCTGACTGTCCT TTGAGTGAGGCCGCTCAGATGCCTCAGGGCCTGACTGTCCT < 41bp 0.512735206296312 0.804171231075909 NA NA prediction 0.582872049559194 Functional Gain - LOC440700 ENSG00000215838 ncRNA_exonic Human transcribed_processed_pseudogene chr1:165677980 chr1:165677979 . . 0 20 hm7G_associated_SNPs_14688 0 0 0 0 1 LOC440700 chr1:165678016 5'GT 165678016 Upstream 38bp 14109 chr2 182392052 182392052 1 + G T LUAD 182392053 + 182392033 182392073 41 CCCAACTTCATTTGTGTATGGATCAAATGATGAAAATGAGC CCCAACTTCATTTGTGTATTGATCAAATGATGAAAATGAGC < 41bp 0.508134135550332 0.799569509545677 NA NA prediction 0.58287074799069 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182392053 chr2:182392052 stopgain 0.997 1 20 hm7G_associated_SNPs_14689 0 0 0 0 2 ITGA4 chr2:182392024 3'AG 182392024 Downstream 29bp 14110 chr2 182392052 182392052 1 + G T LUAD 182392053 + 182392033 182392073 41 CCCAACTTCATTTGTGTATGGATCAAATGATGAAAATGAGC CCCAACTTCATTTGTGTATTGATCAAATGATGAAAATGAGC < 41bp 0.508134135550332 0.799569509545677 NA NA prediction 0.58287074799069 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182392053 chr2:182392052 stopgain 0.997 1 20 hm7G_associated_SNPs_14689 0 0 0 0 2 ITGA4 chr2:182392114 5'GT 182392114 Upstream 63bp 14111 chr4 39776532 39776532 1 + G T UCEC 39776533 + 39776513 39776553 41 CAGAGCCAGATGATCCACAGGATGCTGTAGTAGCAAATCAG CAGAGCCAGATGATCCACATGATGCTGTAGTAGCAAATCAG < 41bp 0.487749815855662 0.791413038825133 NA NA prediction 0.582826077650266 Functional Gain - UBE2K ENSG00000078140 CDS Human protein_coding chr4:39776533 chr4:39776532 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_14693 0 0 1 0 2 UBE2K chr4:39776454 3'AG 39776454 Downstream 79bp 14112 chr4 39776532 39776532 1 + G T UCEC 39776533 + 39776513 39776553 41 CAGAGCCAGATGATCCACAGGATGCTGTAGTAGCAAATCAG CAGAGCCAGATGATCCACATGATGCTGTAGTAGCAAATCAG < 41bp 0.487749815855662 0.791413038825133 NA NA prediction 0.582826077650266 Functional Gain - UBE2K ENSG00000078140 CDS Human protein_coding chr4:39776533 chr4:39776532 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_14693 0 0 1 0 2 UBE2K chr4:39776553 5'GT 39776553 Upstream 22bp 14113 chr17 43317844 43317844 1 + G T STAD 43317845 + 43317825 43317865 41 CTTCCATCTGGGGGACAGAGGCTTCGGCTCACCGAGAGTGA CTTCCATCTGGGGGACAGATGCTTCGGCTCACCGAGAGTGA < 41bp 0.46259931993315 0.791398636100519 NA NA prediction 0.582797272201038 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43317845 chr17:43317844 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_14694 0 0 1 0 1 FMNL1 chr17:43317843 3'AG 43317843 Downstream 2bp 14114 chr9 132982036 132982036 1 + G T LUAD 132982037 + 132982017 132982057 41 AGTTCTCCGAGTTCATCCAGGCGCTGTCGGTGACCTCACGG AGTTCTCCGAGTTCATCCATGCGCTGTCGGTGACCTCACGG < 41bp 0.450238779158111 0.791397975744061 NA NA prediction 0.582795951488123 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132982037 chr9:132982036 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_14695 0 0 1 0 2 NCS1 chr9:132982004 3'AG 132982004 Downstream 33bp 14115 chr9 132982036 132982036 1 + G T LUAD 132982037 + 132982017 132982057 41 AGTTCTCCGAGTTCATCCAGGCGCTGTCGGTGACCTCACGG AGTTCTCCGAGTTCATCCATGCGCTGTCGGTGACCTCACGG < 41bp 0.450238779158111 0.791397975744061 NA NA prediction 0.582795951488123 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132982037 chr9:132982036 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_14695 0 0 1 0 2 NCS1 chr9:132982082 5'GT 132982082 Upstream 47bp 14116 chr11 65726425 65726425 1 + G T LUAD 65726426 + 65726406 65726446 41 CAGCACAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCAGGC CAGCACAGGGTGCAGGCCCTGCCCTTCCTGTTCCAGCAGGC < 41bp 0.473376864335484 0.791380016306886 NA NA prediction 0.582760032613772 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65726426 chr11:65726425 unknown 1.000 2 20 hm7G_associated_SNPs_14696 0 0 0 1 2 TSGA10IP chr11:65726354 3'AG 65726354 Downstream 72bp 14117 chr11 65726425 65726425 1 + G T LUAD 65726426 + 65726406 65726446 41 CAGCACAGGGTGCAGGCCCGGCCCTTCCTGTTCCAGCAGGC CAGCACAGGGTGCAGGCCCTGCCCTTCCTGTTCCAGCAGGC < 41bp 0.473376864335484 0.791380016306886 NA NA prediction 0.582760032613772 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65726426 chr11:65726425 unknown 1.000 2 20 hm7G_associated_SNPs_14696 0 0 0 1 2 TSGA10IP chr11:65726453 5'GT 65726453 Upstream 29bp 14118 chr19 14162481 14162481 1 + G T LUSC 14162482 + 14162462 14162502 41 GTGGGGCTTGTTCCTGTTGGGGTGTGGCCTGAGCCTGGCCA GTGGGGCTTGTTCCTGTTGTGGTGTGGCCTGAGCCTGGCCA < 41bp 0.546644091383939 0.83801458958812 NA NA prediction 0.582740996408361 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14162482 chr19:14162481 nonsynonymous SNV 0.308 2 20 hm7G_associated_SNPs_14697 0 0 0 0 2 IL27RA chr19:14162419 3'AG 14162419 Downstream 63bp 14119 chr19 14162481 14162481 1 + G T LUSC 14162482 + 14162462 14162502 41 GTGGGGCTTGTTCCTGTTGGGGTGTGGCCTGAGCCTGGCCA GTGGGGCTTGTTCCTGTTGTGGTGTGGCCTGAGCCTGGCCA < 41bp 0.546644091383939 0.83801458958812 NA NA prediction 0.582740996408361 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14162482 chr19:14162481 nonsynonymous SNV 0.308 2 20 hm7G_associated_SNPs_14697 0 0 0 0 2 IL27RA chr19:14162512 5'GT 14162512 Upstream 32bp 14120 chr6 28331591 28331591 1 + G T LUSC 28331592 + 28331572 28331612 41 ATGGCAGCCTGGTCTCCCTGGGTAAGACTAAAGGACACTAA ATGGCAGCCTGGTCTCCCTTGGTAAGACTAAAGGACACTAA < 41bp 0.476355945741513 0.791362026058766 NA NA prediction 0.582724052117532 Functional Gain - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28331592 chr6:28331591 synonymous SNV . 0 20 hm7G_associated_SNPs_14698 0 0 1 0 1 ZKSCAN3 chr6:28331592 5'GT 28331592 Upstream 2bp 14121 chr12 52370164 52370164 1 + G T UCEC 52370165 + 52370145 52370185 41 GGGCCCGGTGGAGCTGGTAGGCATCATCGCCGGCCCGGTGT GGGCCCGGTGGAGCTGGTATGCATCATCGCCGGCCCGGTGT < 41bp 0.559529230686899 0.850886749737709 NA NA prediction 0.58271503810162 Functional Gain - ACVR1B ENSG00000135503 CDS Human protein_coding chr12:52370165 chr12:52370164 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_14699 0 0 1 0 1 ACVR1B chr12:52370111 3'AG 52370111 Downstream 54bp 14122 chr22 38212280 38212280 1 + G T LUAD 38212281 + 38212261 38212301 41 CATCTGCCCTGTGATGCTGGGTGATGCCCGGCTGGCCTCTC CATCTGCCCTGTGATGCTGTGTGATGCCCGGCTGGCCTCTC < 41bp 0.542892960169486 0.834250103403155 NA NA prediction 0.582714286467337 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212281 chr22:38212280 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14700 0 0 1 0 2 GCAT chr22:38212207 3'AG 38212207 Downstream 74bp 14123 chr22 38212280 38212280 1 + G T LUAD 38212281 + 38212261 38212301 41 CATCTGCCCTGTGATGCTGGGTGATGCCCGGCTGGCCTCTC CATCTGCCCTGTGATGCTGTGTGATGCCCGGCTGGCCTCTC < 41bp 0.542892960169486 0.834250103403155 NA NA prediction 0.582714286467337 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212281 chr22:38212280 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14700 0 0 1 0 2 GCAT chr22:38212328 5'GT 38212328 Upstream 49bp 14124 chr3 52246368 52246368 1 + G T STAD 52246369 + 52246349 52246389 41 AATTACCCTACGGTGCCCCGGGGAGAAGAGCTCCTACGGAT AATTACCCTACGGTGCCCCTGGGAGAAGAGCTCCTACGGAT < 41bp 0.54750998392425 0.838863838775481 NA NA prediction 0.582707709702464 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52246369 chr3:52246368 nonsynonymous SNV 0.568 5 20 hm7G_associated_SNPs_14701 0 0 1 0 2 ALAS1 chr3:52246274 3'AG 52246274 Downstream 95bp 14125 chr3 52246368 52246368 1 + G T STAD 52246369 + 52246349 52246389 41 AATTACCCTACGGTGCCCCGGGGAGAAGAGCTCCTACGGAT AATTACCCTACGGTGCCCCTGGGAGAAGAGCTCCTACGGAT < 41bp 0.54750998392425 0.838863838775481 NA NA prediction 0.582707709702464 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52246369 chr3:52246368 nonsynonymous SNV 0.568 5 20 hm7G_associated_SNPs_14701 0 0 1 0 2 ALAS1 chr3:52246436 5'GT 52246436 Upstream 69bp 14126 chr17 1933486 1933486 1 + G T SARC 1933487 + 1933467 1933507 41 GCGGCGCTGGTCGTATCCGGGGCAGCGGAGCAGGGCGGCCG GCGGCGCTGGTCGTATCCGTGGCAGCGGAGCAGGGCGGCCG < 41bp 0.481568107234508 0.791305756335231 NA NA prediction 0.582611512670462 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1933487 chr17:1933486 nonsynonymous SNV 0.042 0 20 hm7G_associated_SNPs_14706 0 0 1 0 1 DPH1 chr17:1933524 5'GT 1933524 Upstream 39bp 14127 chr9 93650155 93650155 1 + G T LIHC 93650156 + 93650136 93650176 41 TGGGAAGCATTCTCCTATGGGCAGAAGCCATATCGAGTGAG TGGGAAGCATTCTCCTATGTGCAGAAGCCATATCGAGTGAG < 41bp 0.475369471343115 0.791305003562435 NA NA prediction 0.58261000712487 Functional Gain - SYK ENSG00000165025 CDS Human protein_coding chr9:93650156 chr9:93650155 nonsynonymous SNV 0.311 4 20 hm7G_associated_SNPs_14707 0 0 0 0 1 SYK chr9:93650171 5'GT 93650171 Upstream 17bp 14128 chr19 15763408 15763408 1 + G T COAD 15763409 + 15763389 15763429 41 GGAAGAAGTTGTCCGATGAGGACATAAGAGCAGAAGCTGAC GGAAGAAGTTGTCCGATGATGACATAAGAGCAGAAGCTGAC < 41bp 0.546197181035096 0.837464480034819 NA NA prediction 0.582534597999447 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15763409 chr19:15763408 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_14712 0 0 1 0 1 CYP4F3 chr19:15763379 3'AG 15763379 Downstream 30bp 14129 chr12 111749974 111749974 1 + G T COAD 111749975 + 111749955 111749995 41 TCAAGAGCATTCTAGAGCAGGCCAAGAAGGAGATCGAGTCG TCAAGAGCATTCTAGAGCATGCCAAGAAGGAGATCGAGTCG < 41bp 0.464860349642066 0.791261875578412 NA NA prediction 0.582523751156825 Functional Gain - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111749975 chr12:111749974 nonsynonymous SNV 0.696 4 20 hm7G_associated_SNPs_14713 0 0 0 0 2 CUX2 chr12:111749904 3'AG 111749904 Downstream 71bp 14130 chr12 111749974 111749974 1 + G T COAD 111749975 + 111749955 111749995 41 TCAAGAGCATTCTAGAGCAGGCCAAGAAGGAGATCGAGTCG TCAAGAGCATTCTAGAGCATGCCAAGAAGGAGATCGAGTCG < 41bp 0.464860349642066 0.791261875578412 NA NA prediction 0.582523751156825 Functional Gain - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111749975 chr12:111749974 nonsynonymous SNV 0.696 4 20 hm7G_associated_SNPs_14713 0 0 0 0 2 CUX2 chr12:111750005 5'GT 111750005 Upstream 32bp 14131 chr10 45938628 45938628 1 + G T ACC 45938629 + 45938609 45938649 41 ATCCCCTACTACTTCTACCGGGACGACGGGCTCCTGGTGTG ATCCCCTACTACTTCTACCTGGACGACGGGCTCCTGGTGTG < 41bp 0.469167209270003 0.791241848118702 NA NA prediction 0.582483696237403 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938629 chr10:45938628 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_14716 0 0 1 0 2 ALOX5 chr10:45938582 3'AG 45938582 Downstream 47bp 14132 chr10 45938628 45938628 1 + G T ACC 45938629 + 45938609 45938649 41 ATCCCCTACTACTTCTACCGGGACGACGGGCTCCTGGTGTG ATCCCCTACTACTTCTACCTGGACGACGGGCTCCTGGTGTG < 41bp 0.469167209270003 0.791241848118702 NA NA prediction 0.582483696237403 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938629 chr10:45938628 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_14716 0 0 1 0 2 ALOX5 chr10:45938664 5'GT 45938664 Upstream 37bp 14133 chr9 133553975 133553975 1 + G T LUAD 133553976 + 133553956 133553996 41 ACTCACACAACACCTTCCTGGGGATCCCAGGTGTGCCCGGG ACTCACACAACACCTTCCTTGGGATCCCAGGTGTGCCCGGG < 41bp 0.556363074269066 0.8476037525504 NA NA prediction 0.582481356562668 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553976 chr9:133553975 synonymous SNV . 0 20 hm7G_associated_SNPs_14717 0 0 0 0 2 PRDM12 chr9:133553916 3'AG 133553916 Downstream 60bp 14134 chr9 133553975 133553975 1 + G T LUAD 133553976 + 133553956 133553996 41 ACTCACACAACACCTTCCTGGGGATCCCAGGTGTGCCCGGG ACTCACACAACACCTTCCTTGGGATCCCAGGTGTGCCCGGG < 41bp 0.556363074269066 0.8476037525504 NA NA prediction 0.582481356562668 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133553976 chr9:133553975 synonymous SNV . 0 20 hm7G_associated_SNPs_14717 0 0 0 0 2 PRDM12 chr9:133554027 5'GT 133554027 Upstream 53bp 14135 chr19 36348029 36348029 1 + G T UCEC 36348030 + 36348010 36348050 41 CTTGGGGGACGAATGCTCAGGATGCGGGTCCCCGCCCTCCT CTTGGGGGACGAATGCTCATGATGCGGGTCCCCGCCCTCCT < 41bp 0.541199191718049 0.832434606175786 NA NA prediction 0.582470828915473 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36348030 chr19:36348029 nonsynonymous SNV 0.087 2 20 hm7G_associated_SNPs_14718 0 0 0 0 1 KIRREL2 chr19:36348082 5'GT 36348082 Upstream 54bp 14136 chr2 223559227 223559227 1 + G T ESCA 223559228 + 223559208 223559248 41 GTTCATCCGCCAGCGGAAAGGATTTGTTAAAATTGCTTTGA GTTCATCCGCCAGCGGAAATGATTTGTTAAAATTGCTTTGA < 41bp 0.489732424415697 0.791207808061459 NA NA prediction 0.582415616122917 Functional Gain - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223559228 chr2:223559227 stopgain 0.999 1 20 hm7G_associated_SNPs_14720 0 0 0 0 1 MOGAT1 chr2:223559255 5'GT 223559255 Upstream 29bp 14137 chr17 18166425 18166425 1 + G T HNSC 18166426 + 18166406 18166446 41 GACAGGGCCACTAGCCCGCGGGATGAGGATGACACCAAGGC GACAGGGCCACTAGCCCGCTGGATGAGGATGACACCAAGGC < 41bp 0.551193627545452 0.842401036812621 NA NA prediction 0.582414818534338 Functional Gain - MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18166426 chr17:18166425 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_14721 0 0 0 0 1 MIEF2 chr17:18166400 3'AG 18166400 Downstream 26bp 14138 chr5 167798481 167798481 1 + G T LUAD 167798482 + 167798462 167798502 41 TAGTGATGAGTTGCCGCTAGGATGGGAAGAGGCATATGACC TAGTGATGAGTTGCCGCTATGATGGGAAGAGGCATATGACC < 41bp 0.546759557051802 0.837949624525031 NA NA prediction 0.582380134946458 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167798482 chr5:167798481 stopgain 0.998 1 20 hm7G_associated_SNPs_14722 0 0 1 0 2 WWC1 chr5:167798429 3'AG 167798429 Downstream 53bp 14139 chr5 167798481 167798481 1 + G T LUAD 167798482 + 167798462 167798502 41 TAGTGATGAGTTGCCGCTAGGATGGGAAGAGGCATATGACC TAGTGATGAGTTGCCGCTATGATGGGAAGAGGCATATGACC < 41bp 0.546759557051802 0.837949624525031 NA NA prediction 0.582380134946458 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167798482 chr5:167798481 stopgain 0.998 1 20 hm7G_associated_SNPs_14722 0 0 1 0 2 WWC1 chr5:167798538 5'GT 167798538 Upstream 58bp 14140 chr7 107330585 107330585 1 + G T LUAD 107330586 + 107330566 107330606 41 TAGGAATTCATTGCCTTTGGGATCAGCAACATCTTCTCAGG TAGGAATTCATTGCCTTTGTGATCAGCAACATCTTCTCAGG < 41bp 0.48780148120128 0.791155490648289 NA NA prediction 0.582310981296579 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107330586 chr7:107330585 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14724 0 0 0 0 2 SLC26A4 chr7:107330569 3'AG 107330569 Downstream 17bp 14141 chr7 107330585 107330585 1 + G T LUAD 107330586 + 107330566 107330606 41 TAGGAATTCATTGCCTTTGGGATCAGCAACATCTTCTCAGG TAGGAATTCATTGCCTTTGTGATCAGCAACATCTTCTCAGG < 41bp 0.48780148120128 0.791155490648289 NA NA prediction 0.582310981296579 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107330586 chr7:107330585 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14724 0 0 0 0 2 SLC26A4 chr7:107330682 5'GT 107330682 Upstream 98bp 14142 chr7 111846846 111846846 1 + G T HNSC 111846847 + 111846827 111846867 41 GGAGCTGCAGCACAGTCGGGGGTGTAGGTTATGGGGGTGAG GGAGCTGCAGCACAGTCGGTGGTGTAGGTTATGGGGGTGAG < 41bp 0.507350614461191 0.798503823006743 NA NA prediction 0.582306417091104 Functional Gain - ZNF277 ENSG00000198839 CDS Human protein_coding chr7:111846847 chr7:111846846 synonymous SNV . 0 20 hm7G_associated_SNPs_14725 0 0 1 0 1 ZNF277 chr7:111846862 5'GT 111846862 Upstream 17bp 14143 chr12 57960938 57960938 1 + G T LUAD 57960939 + 57960919 57960959 41 AACGCTTTGTGTCCAGCCCGGAGGAGATTCTGGATGTGATT AACGCTTTGTGTCCAGCCCTGAGGAGATTCTGGATGTGATT < 41bp 0.547466367838357 0.838618499148682 NA NA prediction 0.582304262620649 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57960939 chr12:57960938 synonymous SNV . 0 20 hm7G_associated_SNPs_14726 0 0 1 0 1 KIF5A chr12:57960996 5'GT 57960996 Upstream 59bp 14144 chr13 103506127 103506127 1 + G T UCEC 103506128 + 103506108 103506148 41 TGAAGAGAAGGCAGAGAAAGGACTTAGCGTCCAGTGACTCC TGAAGAGAAGGCAGAGAAATGACTTAGCGTCCAGTGACTCC < 41bp 0.472119075736913 0.791139120219441 NA NA prediction 0.582278240438881 Functional Gain - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103506128 chr13:103506127 nonsynonymous SNV 0.948 4 20 hm7G_associated_SNPs_14728 0 0 0 0 1 BIVM-ERCC5;ERCC5 chr13:103506107 3'AG 103506107 Downstream 21bp 14145 chr5 147513405 147513405 1 + G T UCEC 147513406 + 147513386 147513426 41 GCAGTACAGGGAAGTGTGAGGAGAGCAGCACCCCAGGAACC GCAGTACAGGGAAGTGTGATGAGAGCAGCACCCCAGGAACC < 41bp 0.529632670077148 0.820770257282182 NA NA prediction 0.582275174410068 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147513406 chr5:147513405 nonsynonymous SNV 0.519 0 20 hm7G_associated_SNPs_14729 0 0 0 0 2 SPINK5 chr5:147513360 3'AG 147513360 Downstream 46bp 14146 chr5 147513405 147513405 1 + G T UCEC 147513406 + 147513386 147513426 41 GCAGTACAGGGAAGTGTGAGGAGAGCAGCACCCCAGGAACC GCAGTACAGGGAAGTGTGATGAGAGCAGCACCCCAGGAACC < 41bp 0.529632670077148 0.820770257282182 NA NA prediction 0.582275174410068 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147513406 chr5:147513405 nonsynonymous SNV 0.519 0 20 hm7G_associated_SNPs_14729 0 0 0 0 2 SPINK5 chr5:147513450 5'GT 147513450 Upstream 46bp 14147 chr16 84922916 84922916 1 + G T SKCM 84922917 + 84922897 84922937 41 ACGTGGACGTGATGCCCGTGGATAAAAAGAAGACCTACGTG ACGTGGACGTGATGCCCGTTGATAAAAAGAAGACCTACGTG < 41bp 0.555226381767138 0.846360639596844 NA NA prediction 0.582268515659412 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84922917 chr16:84922916 synonymous SNV . 0 20 hm7G_associated_SNPs_14730 0 0 0 0 2 CRISPLD2 chr16:84922836 3'AG 84922836 Downstream 81bp 14148 chr16 84922916 84922916 1 + G T SKCM 84922917 + 84922897 84922937 41 ACGTGGACGTGATGCCCGTGGATAAAAAGAAGACCTACGTG ACGTGGACGTGATGCCCGTTGATAAAAAGAAGACCTACGTG < 41bp 0.555226381767138 0.846360639596844 NA NA prediction 0.582268515659412 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84922917 chr16:84922916 synonymous SNV . 0 20 hm7G_associated_SNPs_14730 0 0 0 0 2 CRISPLD2 chr16:84922969 5'GT 84922969 Upstream 54bp 14149 chr22 32188768 32188768 1 + G T UCEC 32188769 + 32188749 32188789 41 ACCGAGCCTCAATTCGACAGGATCACAAGGGGAGATTCTAT ACCGAGCCTCAATTCGACATGATCACAAGGGGAGATTCTAT < 41bp 0.509374664402159 0.800505749003108 NA NA prediction 0.582262169201898 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32188769 chr22:32188768 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_14731 0 0 1 0 2 DEPDC5 chr22:32188731 3'AG 32188731 Downstream 38bp 14150 chr22 32188768 32188768 1 + G T UCEC 32188769 + 32188749 32188789 41 ACCGAGCCTCAATTCGACAGGATCACAAGGGGAGATTCTAT ACCGAGCCTCAATTCGACATGATCACAAGGGGAGATTCTAT < 41bp 0.509374664402159 0.800505749003108 NA NA prediction 0.582262169201898 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32188769 chr22:32188768 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_14731 0 0 1 0 2 DEPDC5 chr22:32188803 5'GT 32188803 Upstream 36bp 14151 chr9 140127503 140127503 1 + G T UCEC 140127504 + 140127484 140127524 41 CATCATGGGTGTCAACGTAGGCACATCCATCACCAGCACCC CATCATGGGTGTCAACGTATGCACATCCATCACCAGCACCC < 41bp 0.460412962296856 0.791107356025716 NA NA prediction 0.582214712051432 Functional Gain - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140127504 chr9:140127503 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_14732 0 0 0 0 3 SLC34A3 chr9:140127453 3'AG 140127453 Downstream 51bp 14152 chr9 140127503 140127503 1 + G T UCEC 140127504 + 140127484 140127524 41 CATCATGGGTGTCAACGTAGGCACATCCATCACCAGCACCC CATCATGGGTGTCAACGTATGCACATCCATCACCAGCACCC < 41bp 0.460412962296856 0.791107356025716 NA NA prediction 0.582214712051432 Functional Gain - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140127504 chr9:140127503 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_14732 0 0 0 0 3 SLC34A3 chr9:140127456 3'AG 140127456 Downstream 48bp 14153 chr9 140127503 140127503 1 + G T UCEC 140127504 + 140127484 140127524 41 CATCATGGGTGTCAACGTAGGCACATCCATCACCAGCACCC CATCATGGGTGTCAACGTATGCACATCCATCACCAGCACCC < 41bp 0.460412962296856 0.791107356025716 NA NA prediction 0.582214712051432 Functional Gain - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140127504 chr9:140127503 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_14732 0 0 0 0 3 SLC34A3 chr9:140127567 5'GT 140127567 Upstream 65bp 14154 chr3 38548430 38548430 1 + G T UCEC 38548431 + 38548411 38548451 41 GACCTTACCTCAGACTAGAGGCGATGGAAAGAAAATAGTTA GACCTTACCTCAGACTAGATGCGATGGAAAGAAAATAGTTA < 41bp 0.522250205471702 0.813357380906745 NA NA prediction 0.582214350870087 Functional Gain - EXOG ENSG00000157036 CDS Human protein_coding chr3:38548431 chr3:38548430 nonsynonymous SNV 0.640 2 20 hm7G_associated_SNPs_14733 0 0 0 0 2 EXOG chr3:38548345 3'AG 38548345 Downstream 86bp 14155 chr3 38548430 38548430 1 + G T UCEC 38548431 + 38548411 38548451 41 GACCTTACCTCAGACTAGAGGCGATGGAAAGAAAATAGTTA GACCTTACCTCAGACTAGATGCGATGGAAAGAAAATAGTTA < 41bp 0.522250205471702 0.813357380906745 NA NA prediction 0.582214350870087 Functional Gain - EXOG ENSG00000157036 CDS Human protein_coding chr3:38548431 chr3:38548430 nonsynonymous SNV 0.640 2 20 hm7G_associated_SNPs_14733 0 0 0 0 2 EXOG chr3:38548459 5'GT 38548459 Upstream 30bp 14156 chr19 49982278 49982278 1 + G T LUAD 49982279 + 49982259 49982299 41 ACTCGCCAGAACTTCTCCCGGTGCCTGGAGCTGCAGTGTCA ACTCGCCAGAACTTCTCCCTGTGCCTGGAGCTGCAGTGTCA < 41bp 0.4652295806743 0.791091300158803 NA NA prediction 0.582182600317606 Functional Gain - FLT3LG ENSG00000090554 CDS Human protein_coding chr19:49982279 chr19:49982278 nonsynonymous SNV 0.225 0 20 hm7G_associated_SNPs_14734 0 0 0 0 1 FLT3LG chr19:49982304 5'GT 49982304 Upstream 27bp 14157 chr11 108712092 108712092 1 + G T TGCT 108712093 + 108712073 108712113 41 CTGCCATCAAGGATGCTGAGGAAGATGATGACACAGGTGGT CTGCCATCAAGGATGCTGATGAAGATGATGACACAGGTGGT < 41bp 0.491887105263765 0.791078289007268 NA NA prediction 0.582156578014535 Functional Gain - DDX10 ENSG00000178105 CDS Human protein_coding chr11:108712093 chr11:108712092 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_14735 0 0 1 0 1 DDX10 chr11:108712042 3'AG 108712042 Downstream 51bp 14158 chr4 1018380 1018380 1 + G T COAD 1018381 + 1018361 1018401 41 TGCCCGCCAGGACGATGCGGGCATGTACATCTGCCTTGGCG TGCCCGCCAGGACGATGCGTGCATGTACATCTGCCTTGGCG < 41bp 0.543289860168648 0.834358847606077 NA NA prediction 0.582137974874858 Functional Gain - FGFRL1 ENSG00000127418 CDS Human protein_coding chr4:1018381 chr4:1018380 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_14738 0 0 1 0 1 FGFRL1 chr4:1018452 5'GT 1018452 Upstream 73bp 14159 chr3 51694069 51694069 1 + G T COAD 51694070 + 51694050 51694090 41 ATCCGTACCAGTGATGGACGGATCTTTGCTGTCCGGGCAAC ATCCGTACCAGTGATGGACTGATCTTTGCTGTCCGGGCAAC < 41bp 0.557661568721463 0.848727460193607 NA NA prediction 0.582131782944288 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51694070 chr3:51694069 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_14739 0 0 1 0 2 RAD54L2 chr3:51694042 3'AG 51694042 Downstream 28bp 14160 chr3 51694069 51694069 1 + G T COAD 51694070 + 51694050 51694090 41 ATCCGTACCAGTGATGGACGGATCTTTGCTGTCCGGGCAAC ATCCGTACCAGTGATGGACTGATCTTTGCTGTCCGGGCAAC < 41bp 0.557661568721463 0.848727460193607 NA NA prediction 0.582131782944288 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51694070 chr3:51694069 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_14739 0 0 1 0 2 RAD54L2 chr3:51694134 5'GT 51694134 Upstream 66bp 14161 chr15 78882199 78882199 1 + G T CHOL 78882200 + 78882180 78882220 41 AACAGTCATCAGGTACAATGGCACTGTCACCTGGACTCCAC AACAGTCATCAGGTACAATTGCACTGTCACCTGGACTCCAC < 41bp 0.538601917032453 0.829654653198082 NA NA prediction 0.582105472331258 Functional Gain - CHRNA5 ENSG00000169684 CDS Human protein_coding chr15:78882200 chr15:78882199 nonsynonymous SNV 0.955 5 20 hm7G_associated_SNPs_14742 0 0 1 0 1 CHRNA5 chr15:78882147 3'AG 78882147 Downstream 53bp 14162 chr11 66000451 66000451 1 + G T LAML 66000452 + 66000432 66000472 41 ATGTGGCTGAGCTGCTCCAGGACCAGCGGAAGCCTGTGGTG ATGTGGCTGAGCTGCTCCATGACCAGCGGAAGCCTGTGGTG < 41bp 0.45465388085013 0.791036093451157 NA NA prediction 0.582072186902314 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:66000452 chr11:66000451 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_14743 0 0 1 0 2 PACS1 chr11:66000431 3'AG 66000431 Downstream 21bp 14163 chr11 66000451 66000451 1 + G T LAML 66000452 + 66000432 66000472 41 ATGTGGCTGAGCTGCTCCAGGACCAGCGGAAGCCTGTGGTG ATGTGGCTGAGCTGCTCCATGACCAGCGGAAGCCTGTGGTG < 41bp 0.45465388085013 0.791036093451157 NA NA prediction 0.582072186902314 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:66000452 chr11:66000451 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_14743 0 0 1 0 2 PACS1 chr11:66000537 5'GT 66000537 Upstream 87bp 14164 chr7 105195661 105195661 1 + G T SARC 105195662 + 105195642 105195682 41 TCAACAGTACTAGCAGATTGGGCTGACAATGTTGTGAGTTA TCAACAGTACTAGCAGATTTGGCTGACAATGTTGTGAGTTA < 41bp 0.509651018635902 0.800674162465562 NA NA prediction 0.58204628765932 Functional Gain - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105195662 chr7:105195661 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14745 0 0 1 0 1 RINT1 chr7:105195674 5'GT 105195674 Upstream 14bp 14165 chr12 25260772 25260772 1 + G T COAD 25260773 + 25260753 25260793 41 ATGACACAATAGCTTCCTGGGCAACAAATCTCAAGTCCTCC ATGACACAATAGCTTCCTGTGCAACAAATCTCAAGTCCTCC < 41bp 0.52163187065139 0.812651142927125 NA NA prediction 0.582038544551471 Functional Gain - LRMP ENSG00000118308 CDS Human protein_coding chr12:25260773 chr12:25260772 nonsynonymous SNV 0.760 2 20 hm7G_associated_SNPs_14746 0 0 1 0 1 LRMP chr12:25260751 3'AG 25260751 Downstream 22bp 14166 chr12 100606103 100606103 1 + G T STAD 100606104 + 100606084 100606124 41 ATGTATGCTATGTGTCTCAGGATTTTTATAGAGACATGGAT ATGTATGCTATGTGTCTCATGATTTTTATAGAGACATGGAT < 41bp 0.525982077186677 0.816999881950623 NA NA prediction 0.582035609527892 Functional Gain - ACTR6 ENSG00000075089 CDS Human protein_coding chr12:100606104 chr12:100606103 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14747 0 0 1 0 2 ACTR6 chr12:100606034 3'AG 100606034 Downstream 70bp 14167 chr12 100606103 100606103 1 + G T STAD 100606104 + 100606084 100606124 41 ATGTATGCTATGTGTCTCAGGATTTTTATAGAGACATGGAT ATGTATGCTATGTGTCTCATGATTTTTATAGAGACATGGAT < 41bp 0.525982077186677 0.816999881950623 NA NA prediction 0.582035609527892 Functional Gain - ACTR6 ENSG00000075089 CDS Human protein_coding chr12:100606104 chr12:100606103 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14747 0 0 1 0 2 ACTR6 chr12:100606132 5'GT 100606132 Upstream 30bp 14168 chrX 44733204 44733204 1 + G T SARC 44733205 + 44733185 44733225 41 CGTGAGATTTCATGAAGATGGCGCCAGGACGAAGGCCCTAC CGTGAGATTTCATGAAGATTGCGCCAGGACGAAGGCCCTAC < 41bp 0.476150095979916 0.790999654187314 NA NA prediction 0.581999308374629 Functional Gain - KDM6A ENSG00000147050 CDS Human protein_coding chrX:44733205 chrX:44733204 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14749 0 0 1 0 2 KDM6A chrX:44733170 3'AG 44733170 Downstream 35bp 14169 chrX 44733204 44733204 1 + G T SARC 44733205 + 44733185 44733225 41 CGTGAGATTTCATGAAGATGGCGCCAGGACGAAGGCCCTAC CGTGAGATTTCATGAAGATTGCGCCAGGACGAAGGCCCTAC < 41bp 0.476150095979916 0.790999654187314 NA NA prediction 0.581999308374629 Functional Gain - KDM6A ENSG00000147050 CDS Human protein_coding chrX:44733205 chrX:44733204 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14749 0 0 1 0 2 KDM6A chrX:44733233 5'GT 44733233 Upstream 30bp 14170 chr9 101751489 101751489 1 + G T BLCA 101751490 + 101751470 101751510 41 AGACCAGTGGGCTGCAGGAGGCAGACGGAGTAGCTGAGATC AGACCAGTGGGCTGCAGGATGCAGACGGAGTAGCTGAGATC < 41bp 0.548241449102114 0.839241055600794 NA NA prediction 0.58199921299736 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101751490 chr9:101751489 nonsynonymous SNV 0.361 0 20 hm7G_associated_SNPs_14750 0 0 0 0 2 COL15A1 chr9:101751460 3'AG 101751460 Downstream 30bp 14171 chr9 101751489 101751489 1 + G T BLCA 101751490 + 101751470 101751510 41 AGACCAGTGGGCTGCAGGAGGCAGACGGAGTAGCTGAGATC AGACCAGTGGGCTGCAGGATGCAGACGGAGTAGCTGAGATC < 41bp 0.548241449102114 0.839241055600794 NA NA prediction 0.58199921299736 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101751490 chr9:101751489 nonsynonymous SNV 0.361 0 20 hm7G_associated_SNPs_14750 0 0 0 0 2 COL15A1 chr9:101751540 5'GT 101751540 Upstream 52bp 14172 chr11 63971017 63971017 1 + G T UCEC 63971018 + 63970998 63971038 41 GAGCCATGGCCGACCCTGAGGTGCAGCAGATCATGAGTGAC GAGCCATGGCCGACCCTGATGTGCAGCAGATCATGAGTGAC < 41bp 0.54400027964054 0.834994812825643 NA NA prediction 0.581989066370207 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63971018 chr11:63971017 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14751 0 0 1 0 2 STIP1 chr11:63970922 3'AG 63970922 Downstream 96bp 14173 chr11 63971017 63971017 1 + G T UCEC 63971018 + 63970998 63971038 41 GAGCCATGGCCGACCCTGAGGTGCAGCAGATCATGAGTGAC GAGCCATGGCCGACCCTGATGTGCAGCAGATCATGAGTGAC < 41bp 0.54400027964054 0.834994812825643 NA NA prediction 0.581989066370207 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63971018 chr11:63971017 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14751 0 0 1 0 2 STIP1 chr11:63971094 5'GT 63971094 Upstream 78bp 14174 chr20 61869765 61869765 1 + G T ACC 61869766 + 61869746 61869786 41 AGCTGTCAGTTCCTGCTCCGGTCAAAAGGAAGAGACTTTGT AGCTGTCAGTTCCTGCTCCTGTCAAAAGGAAGAGACTTTGT < 41bp 0.48405770301232 0.79099120475114 NA NA prediction 0.581982409502279 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869766 chr20:61869765 nonsynonymous SNV 0.066 0 20 hm7G_associated_SNPs_14752 0 0 0 0 2 BIRC7 chr20:61869748 3'AG 61869748 Downstream 18bp 14175 chr20 61869765 61869765 1 + G T ACC 61869766 + 61869746 61869786 41 AGCTGTCAGTTCCTGCTCCGGTCAAAAGGAAGAGACTTTGT AGCTGTCAGTTCCTGCTCCTGTCAAAAGGAAGAGACTTTGT < 41bp 0.48405770301232 0.79099120475114 NA NA prediction 0.581982409502279 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869766 chr20:61869765 nonsynonymous SNV 0.066 0 20 hm7G_associated_SNPs_14752 0 0 0 0 2 BIRC7 chr20:61869829 5'GT 61869829 Upstream 65bp 14176 chr19 11474845 11474845 1 + G T STAD 11474846 + 11474826 11474866 41 CTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATTCGACA CTTTGTCTCAGGAACCCGATGTCTGCAGGCCGCATTCGACA < 41bp 0.551509477899125 0.842471886993325 NA NA prediction 0.581924818188401 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474846 chr19:11474845 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_14754 0 0 1 0 2 PLPPR2 chr19:11474837 3'AG 11474837 Downstream 9bp 14177 chr19 11474845 11474845 1 + G T STAD 11474846 + 11474826 11474866 41 CTTTGTCTCAGGAACCCGAGGTCTGCAGGCCGCATTCGACA CTTTGTCTCAGGAACCCGATGTCTGCAGGCCGCATTCGACA < 41bp 0.551509477899125 0.842471886993325 NA NA prediction 0.581924818188401 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474846 chr19:11474845 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_14754 0 0 1 0 2 PLPPR2 chr19:11474888 5'GT 11474888 Upstream 44bp 14178 chr6 50712888 50712888 1 + G T LUAD 50712889 + 50712869 50712909 41 GTTTCCAGCCAAAGCAGTAGGAGAACATCTTGCCAGACAAC GTTTCCAGCCAAAGCAGTATGAGAACATCTTGCCAGACAAC < 41bp 0.517129665995352 0.808090886427409 NA NA prediction 0.581922440864114 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50712889 chr6:50712888 stopgain 0.999 1 20 hm7G_associated_SNPs_14755 0 0 0 1 2 TFAP2D chr6:50712820 3'AG 50712820 Downstream 69bp 14179 chr6 50712888 50712888 1 + G T LUAD 50712889 + 50712869 50712909 41 GTTTCCAGCCAAAGCAGTAGGAGAACATCTTGCCAGACAAC GTTTCCAGCCAAAGCAGTATGAGAACATCTTGCCAGACAAC < 41bp 0.517129665995352 0.808090886427409 NA NA prediction 0.581922440864114 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50712889 chr6:50712888 stopgain 0.999 1 20 hm7G_associated_SNPs_14755 0 0 0 1 2 TFAP2D chr6:50712961 5'GT 50712961 Upstream 74bp 14180 chr10 135195132 135195132 1 + G T LUAD 135195133 + 135195113 135195153 41 AGGATGGAGACCGGTTCCCGGCGCACCATGTCATCGTCACC AGGATGGAGACCGGTTCCCTGCGCACCATGTCATCGTCACC < 41bp 0.455196846633609 0.790943302415884 NA NA prediction 0.581886604831769 Functional Gain - PAOX ENSG00000148832 CDS Human protein_coding chr10:135195133 chr10:135195132 synonymous SNV . 0 20 hm7G_associated_SNPs_14756 0 0 0 0 1 PAOX chr10:135195163 5'GT 135195163 Upstream 32bp 14181 chr7 73466116 73466116 1 + G T LUSC 73466117 + 73466097 73466137 41 GTCCTCCCTGGTGTTGGAGGGGCTGGTGTTCCTGGCGTGCC GTCCTCCCTGGTGTTGGAGTGGCTGGTGTTCCTGGCGTGCC < 41bp 0.486718639034444 0.790939740703797 NA NA prediction 0.581879481407594 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73466117 chr7:73466116 nonsynonymous SNV 0.616 1 20 hm7G_associated_SNPs_14757 0 0 0 0 2 ELN chr7:73466080 3'AG 73466080 Downstream 37bp 14182 chr7 73466116 73466116 1 + G T LUSC 73466117 + 73466097 73466137 41 GTCCTCCCTGGTGTTGGAGGGGCTGGTGTTCCTGGCGTGCC GTCCTCCCTGGTGTTGGAGTGGCTGGTGTTCCTGGCGTGCC < 41bp 0.486718639034444 0.790939740703797 NA NA prediction 0.581879481407594 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73466117 chr7:73466116 nonsynonymous SNV 0.616 1 20 hm7G_associated_SNPs_14757 0 0 0 0 2 ELN chr7:73466169 5'GT 73466169 Upstream 54bp 14183 chr6 16130898 16130898 1 + G T LUAD 16130899 + 16130879 16130919 41 ACCGGATCTCCCAGCAGATGGATGGGCTAGCCCCTTACAGG ACCGGATCTCCCAGCAGATTGATGGGCTAGCCCCTTACAGG < 41bp 0.473593270304084 0.790934843235922 NA NA prediction 0.581869686471843 Functional Gain - MYLIP ENSG00000007944 CDS Human protein_coding chr6:16130899 chr6:16130898 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_14758 0 0 1 0 1 MYLIP chr6:16130978 5'GT 16130978 Upstream 81bp 14184 chr2 27282224 27282224 1 + G T STAD 27282225 + 27282205 27282245 41 TGCAGGGCTGCCAGGCCTGGGCTCTAGTACCCAAAAGGTCA TGCAGGGCTGCCAGGCCTGTGCTCTAGTACCCAAAAGGTCA < 41bp 0.465373396573213 0.790927796081574 NA NA prediction 0.581855592163147 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27282225 chr2:27282224 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14760 0 0 1 0 1 AGBL5 chr2:27282272 5'GT 27282272 Upstream 49bp 14185 chr14 100405583 100405583 1 + G T STAD 100405584 + 100405564 100405604 41 ACATCAATGCCGTCTGTCGGGCCCATGAGAAGAAACTCCTG ACATCAATGCCGTCTGTCGTGCCCATGAGAAGAAACTCCTG < 41bp 0.555264985783105 0.846184882889323 NA NA prediction 0.581839794212437 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100405584 chr14:100405583 synonymous SNV . 0 20 hm7G_associated_SNPs_14762 0 0 1 0 1 EML1 chr14:100405534 3'AG 100405534 Downstream 50bp 14186 chr8 87549859 87549859 1 + G T PAAD 87549860 + 87549840 87549880 41 CTGATGGAAACTGGCTAATGGTTCATCGGACAGAGGTGAAT CTGATGGAAACTGGCTAATTGTTCATCGGACAGAGGTGAAT < 41bp 0.526333543213849 0.817252291832251 NA NA prediction 0.581837497236804 Functional Gain - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87549860 chr8:87549859 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14763 0 0 1 0 2 CPNE3 chr8:87549791 3'AG 87549791 Downstream 69bp 14187 chr8 87549859 87549859 1 + G T PAAD 87549860 + 87549840 87549880 41 CTGATGGAAACTGGCTAATGGTTCATCGGACAGAGGTGAAT CTGATGGAAACTGGCTAATTGTTCATCGGACAGAGGTGAAT < 41bp 0.526333543213849 0.817252291832251 NA NA prediction 0.581837497236804 Functional Gain - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87549860 chr8:87549859 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14763 0 0 1 0 2 CPNE3 chr8:87549874 5'GT 87549874 Upstream 16bp 14188 chr22 40803251 40803251 1 + G T LIHC 40803252 + 40803232 40803272 41 CCAAGAACATCAAGCAGACGGAACTGGTGGCTGACCTCCGG CCAAGAACATCAAGCAGACTGAACTGGTGGCTGACCTCCGG < 41bp 0.45838896831615 0.790898623560879 NA NA prediction 0.581797247121758 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803252 chr22:40803251 synonymous SNV . 0 20 hm7G_associated_SNPs_14764 0 0 1 0 2 SGSM3 chr22:40803205 3'AG 40803205 Downstream 47bp 14189 chr22 40803251 40803251 1 + G T LIHC 40803252 + 40803232 40803272 41 CCAAGAACATCAAGCAGACGGAACTGGTGGCTGACCTCCGG CCAAGAACATCAAGCAGACTGAACTGGTGGCTGACCTCCGG < 41bp 0.45838896831615 0.790898623560879 NA NA prediction 0.581797247121758 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40803252 chr22:40803251 synonymous SNV . 0 20 hm7G_associated_SNPs_14764 0 0 1 0 2 SGSM3 chr22:40803332 5'GT 40803332 Upstream 82bp 14190 chr17 41561531 41561531 1 + G T LUAD 41561532 + 41561512 41561552 41 CTGAGCTGGACAATCACTTGGGGATCAACGACAAGGACCTT CTGAGCTGGACAATCACTTTGGGATCAACGACAAGGACCTT < 41bp 0.470290419605935 0.790889438338839 NA NA prediction 0.581778876677677 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41561532 chr17:41561531 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14765 0 0 1 0 1 DHX8 chr17:41561553 5'GT 41561553 Upstream 23bp 14191 chr12 120114460 120114460 1 + G T UCEC 120114461 + 120114441 120114481 41 TCCAGGTCATCCTGAACAAGGACACGGGGATTTCCGTAAGT TCCAGGTCATCCTGAACAATGACACGGGGATTTCCGTAAGT < 41bp 0.547351920390448 0.838239169613521 NA NA prediction 0.581774498446147 Functional Gain - PRKAB1 ENSG00000111725 CDS Human protein_coding chr12:120114461 chr12:120114460 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_14766 0 0 1 0 1 PRKAB1 chr12:120114475 5'GT 120114475 Upstream 16bp 14192 chr16 28509310 28509310 1 + G T LUSC 28509311 + 28509291 28509331 41 GGAGGTGCTGCCAACAGCTGGAGCGAGGTGAGGGCTCTTGG GGAGGTGCTGCCAACAGCTTGAGCGAGGTGAGGGCTCTTGG < 41bp 0.493748423403628 0.790883165985317 NA NA prediction 0.581766331970634 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28509311 chr16:28509310 nonsynonymous SNV 0.863 3 20 hm7G_associated_SNPs_14767 0 0 0 0 1 APOBR chr16:28509317 5'GT 28509317 Upstream 8bp 14193 chr8 145616790 145616790 1 + G T COAD 145616791 + 145616771 145616811 41 GGCCCCCAGGACCTGAAGGGGACCCTGGCCCAGGAGCTGGA GGCCCCCAGGACCTGAAGGTGACCCTGGCCCAGGAGCTGGA < 41bp 0.549520416437116 0.840403499987283 NA NA prediction 0.581766167100333 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145616791 chr8:145616790 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_14768 0 0 1 0 1 ADCK5 chr8:145616780 3'AG 145616780 Downstream 11bp 14194 chr16 68714912 68714912 1 + G T rs148535251 68714913 + 68714893 68714933 41 CCATCCAGGCCACAGACATGGATGGGGACGGCTCCACCACC CCATCCAGGCCACAGACATTGATGGGGACGGCTCCACCACC < 41bp 0.458377472207308 0.790879927102861 NA NA prediction 0.581759854205723 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68714913 chr16:68714912 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14769 0 0 0 0 2 CDH3 chr16:68714871 3'AG 68714871 Downstream 42bp 14195 chr16 68714912 68714912 1 + G T rs148535251 68714913 + 68714893 68714933 41 CCATCCAGGCCACAGACATGGATGGGGACGGCTCCACCACC CCATCCAGGCCACAGACATTGATGGGGACGGCTCCACCACC < 41bp 0.458377472207308 0.790879927102861 NA NA prediction 0.581759854205723 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68714913 chr16:68714912 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14769 0 0 0 0 2 CDH3 chr16:68714999 5'GT 68714999 Upstream 88bp 14196 chrX 134706886 134706886 1 + G T LGG 134706887 + 134706867 134706907 41 TATTGAAAGAAATCACAGGGGAAACTGCACTTAGACTGACA TATTGAAAGAAATCACAGGTGAAACTGCACTTAGACTGACA < 41bp 0.517527956083101 0.808402239577269 NA NA prediction 0.581748566988334 Functional Gain - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134706887 chrX:134706886 synonymous SNV . 0 20 hm7G_associated_SNPs_14770 0 0 0 0 1 INTS6L chrX:134706958 5'GT 134706958 Upstream 73bp 14197 chrX 1742086 1742086 1 + G T LUSC 1742087 + 1742067 1742107 41 CCTTCTCGCCGAGGCCCCAGGGCCCCTGGACGTGGCGGCAG CCTTCTCGCCGAGGCCCCATGGCCCCTGGACGTGGCGGCAG < 41bp 0.562889828229379 0.853748977839918 NA NA prediction 0.581718299221079 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1742087 chrX:1742086 nonsynonymous SNV 0.677 3 20 hm7G_associated_SNPs_14771 0 0 0 0 1 ASMT chrX:1742032 3'AG 1742032 Downstream 55bp 14198 chr6 37429325 37429325 1 + G T BRCA 37429326 + 37429306 37429346 41 CCTTGTGCTCTCATTTCAGGGTTTCTCGGTGGAGGGGCAGG CCTTGTGCTCTCATTTCAGTGTTTCTCGGTGGAGGGGCAGG < 41bp 0.549339519851968 0.840186560056854 NA NA prediction 0.581694080409772 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37429326 chr6:37429325 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_14773 0 0 1 0 2 CMTR1 chr6:37429325 5'GT 37429325 Upstream 1bp 14199 chr6 37429325 37429325 1 + G T BRCA 37429326 + 37429306 37429346 41 CCTTGTGCTCTCATTTCAGGGTTTCTCGGTGGAGGGGCAGG CCTTGTGCTCTCATTTCAGTGTTTCTCGGTGGAGGGGCAGG < 41bp 0.549339519851968 0.840186560056854 NA NA prediction 0.581694080409772 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37429326 chr6:37429325 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_14773 0 0 1 0 2 CMTR1 chr6:37429421 5'GT 37429421 Upstream 97bp 14200 chr17 4389723 4389723 1 + G T LUSC 4389724 + 4389704 4389744 41 CAGATCTCTAGTGTCCTGCGGGCCAGGCGCCCTGACTCCTA CAGATCTCTAGTGTCCTGCTGGCCAGGCGCCCTGACTCCTA < 41bp 0.471140022085446 0.790825721910754 NA NA prediction 0.581651443821508 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4389724 chr17:4389723 nonsynonymous SNV 0.051 0 20 hm7G_associated_SNPs_14776 0 0 0 0 1 SPNS3 chr17:4389707 3'AG 4389707 Downstream 17bp 14201 chr13 73327858 73327858 1 + G T STAD 73327859 + 73327839 73327879 41 CTATAATACGCAGAATTGTGGAAGCAATATTATGGATACAG CTATAATACGCAGAATTGTTGAAGCAATATTATGGATACAG < 41bp 0.514044962913592 0.8048660152879 NA NA prediction 0.581642104748616 Functional Gain - BORA ENSG00000136122 CDS Human protein_coding chr13:73327859 chr13:73327858 stopgain 0.976 1 20 hm7G_associated_SNPs_14777 0 0 1 0 1 BORA chr13:73327828 3'AG 73327828 Downstream 31bp 14202 chr1 33117555 33117555 1 + G T UCEC 33117556 + 33117536 33117576 41 AAGAACGAGTGATCAACGAGGAATACAAAATATGGAAAAAG AAGAACGAGTGATCAACGATGAATACAAAATATGGAAAAAG < 41bp 0.488463187545689 0.790820055996906 NA NA prediction 0.581640111993812 Functional Gain - RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33117556 chr1:33117555 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_14778 0 0 1 0 2 RBBP4 chr1:33117515 3'AG 33117515 Downstream 41bp 14203 chr1 33117555 33117555 1 + G T UCEC 33117556 + 33117536 33117576 41 AAGAACGAGTGATCAACGAGGAATACAAAATATGGAAAAAG AAGAACGAGTGATCAACGATGAATACAAAATATGGAAAAAG < 41bp 0.488463187545689 0.790820055996906 NA NA prediction 0.581640111993812 Functional Gain - RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33117556 chr1:33117555 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_14778 0 0 1 0 2 RBBP4 chr1:33117518 3'AG 33117518 Downstream 38bp 14204 chr18 6873435 6873435 1 + G T ESCA 6873436 + 6873416 6873456 41 TGTTCAGAAAACCAGATTTGGCTTAACTGAAGCAGGAGATC TGTTCAGAAAACCAGATTTTGCTTAACTGAAGCAGGAGATC < 41bp 0.535692672962703 0.826508794153078 NA NA prediction 0.58163224238075 Functional Gain - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6873436 chr18:6873435 nonsynonymous SNV 0.735 4 20 hm7G_associated_SNPs_14780 0 0 0 0 1 ARHGAP28 chr18:6873408 3'AG 6873408 Downstream 28bp 14205 chr16 67006837 67006837 1 + G T OV 67006838 + 67006818 67006858 41 GAGATCAACCCAGTGCCACGGGCCGGACAGAAGTTCAGGGA GAGATCAACCCAGTGCCACTGGCCGGACAGAAGTTCAGGGA < 41bp 0.530077244650149 0.820892747605931 NA NA prediction 0.581631005911565 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67006838 chr16:67006837 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_14781 0 0 0 0 1 CES3 chr16:67006757 3'AG 67006757 Downstream 81bp 14206 chr15 43641162 43641162 1 + G T LUAD 43641163 + 43641143 43641183 41 TCTGCTTCCTGACAGAATCGGGCATGGAACATTTCTCAACT TCTGCTTCCTGACAGAATCTGGCATGGAACATTTCTCAACT < 41bp 0.533809896174403 0.824602315601755 NA NA prediction 0.581584838854702 Functional Gain - ADAL ENSG00000168803 CDS Human protein_coding chr15:43641163 chr15:43641162 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_14783 0 0 1 0 2 ADAL chr15:43641105 3'AG 43641105 Downstream 58bp 14207 chr15 43641162 43641162 1 + G T LUAD 43641163 + 43641143 43641183 41 TCTGCTTCCTGACAGAATCGGGCATGGAACATTTCTCAACT TCTGCTTCCTGACAGAATCTGGCATGGAACATTTCTCAACT < 41bp 0.533809896174403 0.824602315601755 NA NA prediction 0.581584838854702 Functional Gain - ADAL ENSG00000168803 CDS Human protein_coding chr15:43641163 chr15:43641162 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_14783 0 0 1 0 2 ADAL chr15:43641243 5'GT 43641243 Upstream 82bp 14208 chr3 153973184 153973184 1 + G T COAD 153973185 + 153973165 153973205 41 TTCCTATGGAATGTGCCAAGGAGATAACATGTCAAGCTACA TTCCTATGGAATGTGCCAATGAGATAACATGTCAAGCTACA < 41bp 0.496145844654908 0.790713764037353 NA NA prediction 0.581427528074705 Functional Gain - ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153973185 chr3:153973184 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14790 0 0 1 2 1 ARHGEF26 chr3:153973120 3'AG 153973120 Downstream 65bp 14209 chr19 14023152 14023152 1 + G T OV 14023153 + 14023133 14023173 41 CAGGTCCCTTGCCGATGGAGGCCATTGAGAAGATGGCCAGC CAGGTCCCTTGCCGATGGATGCCATTGAGAAGATGGCCAGC < 41bp 0.557642667265549 0.848352748364355 NA NA prediction 0.581420162197613 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14023153 chr19:14023152 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_14791 0 0 0 0 2 CC2D1A chr19:14023136 3'AG 14023136 Downstream 17bp 14210 chr19 14023152 14023152 1 + G T OV 14023153 + 14023133 14023173 41 CAGGTCCCTTGCCGATGGAGGCCATTGAGAAGATGGCCAGC CAGGTCCCTTGCCGATGGATGCCATTGAGAAGATGGCCAGC < 41bp 0.557642667265549 0.848352748364355 NA NA prediction 0.581420162197613 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14023153 chr19:14023152 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_14791 0 0 0 0 2 CC2D1A chr19:14023251 5'GT 14023251 Upstream 100bp 14211 chr8 42401640 42401640 1 + G T COAD 42401641 + 42401621 42401661 41 TGGGGGTTATGGAGTGATGGGTGACGATGGTTCTATTGATT TGGGGGTTATGGAGTGATGTGTGACGATGGTTCTATTGATT < 41bp 0.474934704229825 0.790705431260139 NA NA prediction 0.581410862520278 Functional Gain - SMIM19 ENSG00000176209 CDS Human protein_coding chr8:42401641 chr8:42401640 nonsynonymous SNV 0.905 3 20 hm7G_associated_SNPs_14792 0 0 1 0 1 SMIM19 chr8:42401612 3'AG 42401612 Downstream 29bp 14212 chr4 39271605 39271605 1 + G T STAD 39271606 + 39271586 39271626 41 TTTTTTCAAGGCAACTACCGGAATGCACACGATGTTCTCTT TTTTTTCAAGGCAACTACCTGAATGCACACGATGTTCTCTT < 41bp 0.514157033964919 0.8048593242357 NA NA prediction 0.581404580541562 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39271606 chr4:39271605 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_14793 0 0 0 0 1 WDR19 chr4:39271596 3'AG 39271596 Downstream 10bp 14213 chr16 67166792 67166792 1 + G T LIHC 67166793 + 67166773 67166813 41 TCTTTTCAGTTAGACTCATGGACTGAGGCTCCAAAGTATGA TCTTTTCAGTTAGACTCATTGACTGAGGCTCCAAAGTATGA < 41bp 0.470698322519915 0.790698552002437 NA NA prediction 0.581397104004873 Functional Gain - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67166793 chr16:67166792 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_14794 0 0 1 0 2 C16orf70 chr16:67166720 3'AG 67166720 Downstream 73bp 14214 chr16 67166792 67166792 1 + G T LIHC 67166793 + 67166773 67166813 41 TCTTTTCAGTTAGACTCATGGACTGAGGCTCCAAAGTATGA TCTTTTCAGTTAGACTCATTGACTGAGGCTCCAAAGTATGA < 41bp 0.470698322519915 0.790698552002437 NA NA prediction 0.581397104004873 Functional Gain - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67166793 chr16:67166792 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_14794 0 0 1 0 2 C16orf70 chr16:67166814 5'GT 67166814 Upstream 23bp 14215 chr20 19870273 19870273 1 + G T OV 19870274 + 19870254 19870294 41 TTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTT TTGGACCATGGGCGCCCGCTGTCTGGACAAGCGAGGAAGTT < 41bp 0.474167820501935 0.790680863779184 NA NA prediction 0.581361727558368 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19870274 chr20:19870273 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_14799 0 0 1 0 1 RIN2 chr20:19870302 5'GT 19870302 Upstream 30bp 14216 chr16 30900228 30900228 1 + G T THYM 30900229 + 30900209 30900249 41 TCCTCCTTGGTCAGCATTGGGGGTTCGTCGGTGCTGCCAGC TCCTCCTTGGTCAGCATTGTGGGTTCGTCGGTGCTGCCAGC < 41bp 0.485898945898528 0.790676958833536 NA NA prediction 0.581353917667072 Functional Gain - BCL7C ENSG00000099385 CDS Human antisense chr16:30900229 chr16:30900228 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14800 0 0 0 0 1 MIR762HG chr16:30900279 5'GT 30900279 Upstream 52bp 14217 chr17 47121402 47121402 1 + G T LUAD 47121403 + 47121383 47121423 41 GCCATCATCGGCAAGAAGGGGCAGCACATCAAACAGCTCTC GCCATCATCGGCAAGAAGGTGCAGCACATCAAACAGCTCTC < 41bp 0.468537650066195 0.790666009637836 NA NA prediction 0.581332019275672 Functional Gain - IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47121403 chr17:47121402 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_14801 0 0 1 0 2 IGF2BP1 chr17:47121329 3'AG 47121329 Downstream 74bp 14218 chr17 47121402 47121402 1 + G T LUAD 47121403 + 47121383 47121423 41 GCCATCATCGGCAAGAAGGGGCAGCACATCAAACAGCTCTC GCCATCATCGGCAAGAAGGTGCAGCACATCAAACAGCTCTC < 41bp 0.468537650066195 0.790666009637836 NA NA prediction 0.581332019275672 Functional Gain - IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47121403 chr17:47121402 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_14801 0 0 1 0 2 IGF2BP1 chr17:47121448 5'GT 47121448 Upstream 47bp 14219 chr7 99987718 99987718 1 + G T UCEC 99987719 + 99987699 99987739 41 ATCTGCCTCCTCAGGTGGAGGAGAAGGAAAGGTAAGTGCCC ATCTGCCTCCTCAGGTGGATGAGAAGGAAAGGTAAGTGCCC < 41bp 0.527794083371661 0.818457219106046 NA NA prediction 0.581326271468771 Functional Gain - PILRA ENSG00000085514 CDS Human protein_coding chr7:99987719 chr7:99987718 nonsynonymous SNV 0.041 1 20 hm7G_associated_SNPs_14802 0 0 0 0 1 PILRA chr7:99987729 5'GT 99987729 Upstream 12bp 14220 chrX 64718907 64718907 1 + G T UCEC 64718908 + 64718888 64718928 41 TTCTACGAAAACTGGAGAAGGAAAAGATTCTTGTCTTCACA TTCTACGAAAACTGGAGAATGAAAAGATTCTTGTCTTCACA < 41bp 0.520374707369285 0.811037564867 NA NA prediction 0.58132571499543 Functional Gain - ZC3H12B ENSG00000102053 CDS Human protein_coding chrX:64718908 chrX:64718907 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_14803 0 0 0 0 1 ZC3H12B chrX:64718879 3'AG 64718879 Downstream 29bp 14221 chr12 107103144 107103144 1 + G T STAD 107103145 + 107103125 107103165 41 GAAAGTTTGCCAAGCAACTGGATGAGTGGCTAAAAGTGGCT GAAAGTTTGCCAAGCAACTTGATGAGTGGCTAAAAGTGGCT < 41bp 0.550688704820572 0.841347641684424 NA NA prediction 0.581317873727704 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107103145 chr12:107103144 synonymous SNV . 0 20 hm7G_associated_SNPs_14804 0 0 0 1 2 RFX4 chr12:107103108 3'AG 107103108 Downstream 37bp 14222 chr12 107103144 107103144 1 + G T STAD 107103145 + 107103125 107103165 41 GAAAGTTTGCCAAGCAACTGGATGAGTGGCTAAAAGTGGCT GAAAGTTTGCCAAGCAACTTGATGAGTGGCTAAAAGTGGCT < 41bp 0.550688704820572 0.841347641684424 NA NA prediction 0.581317873727704 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107103145 chr12:107103144 synonymous SNV . 0 20 hm7G_associated_SNPs_14804 0 0 0 1 2 RFX4 chr12:107103208 5'GT 107103208 Upstream 65bp 14223 chr16 31896519 31896519 1 + G T LIHC 31896520 + 31896500 31896540 41 CGGACCTGATCACCTTTTTGGAACAAAGGAAAGAGCCTTGG CGGACCTGATCACCTTTTTTGAACAAAGGAAAGAGCCTTGG < 41bp 0.487649223884365 0.790648480957281 NA NA prediction 0.581296961914563 Functional Gain - ZNF267 ENSG00000185947 CDS Human protein_coding chr16:31896520 chr16:31896519 nonsynonymous SNV 0.028 2 20 hm7G_associated_SNPs_14806 0 0 1 0 2 ZNF267 chr16:31896482 3'AG 31896482 Downstream 38bp 14224 chr16 31896519 31896519 1 + G T LIHC 31896520 + 31896500 31896540 41 CGGACCTGATCACCTTTTTGGAACAAAGGAAAGAGCCTTGG CGGACCTGATCACCTTTTTTGAACAAAGGAAAGAGCCTTGG < 41bp 0.487649223884365 0.790648480957281 NA NA prediction 0.581296961914563 Functional Gain - ZNF267 ENSG00000185947 CDS Human protein_coding chr16:31896520 chr16:31896519 nonsynonymous SNV 0.028 2 20 hm7G_associated_SNPs_14806 0 0 1 0 2 ZNF267 chr16:31896577 5'GT 31896577 Upstream 59bp 14225 chr11 64033379 64033379 1 + G T STAD 64033380 + 64033360 64033400 41 GTGGGGCCGCTGATGTGGAGGACACGAAGGAGGGGGAGGAC GTGGGGCCGCTGATGTGGATGACACGAAGGAGGGGGAGGAC < 41bp 0.553952424697937 0.844592941467226 NA NA prediction 0.581281033538576 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64033380 chr11:64033379 nonsynonymous SNV 0.026 0 20 hm7G_associated_SNPs_14808 0 0 0 0 1 PLCB3 chr11:64033358 3'AG 64033358 Downstream 22bp 14226 chrX 17152003 17152003 1 + G T UCEC 17152004 + 17151984 17152024 41 TGAGCAGAGCCCCATCCCAGGCTGCAGAAAGTAGTCCAGCA TGAGCAGAGCCCCATCCCATGCTGCAGAAAGTAGTCCAGCA < 41bp 0.542877317835093 0.833508961373968 NA NA prediction 0.581263287077751 Functional Gain - REPS2 ENSG00000169891 CDS Human protein_coding chrX:17152004 chrX:17152003 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_14810 0 0 0 0 2 REPS2 chrX:17151947 3'AG 17151947 Downstream 57bp 14227 chrX 17152003 17152003 1 + G T UCEC 17152004 + 17151984 17152024 41 TGAGCAGAGCCCCATCCCAGGCTGCAGAAAGTAGTCCAGCA TGAGCAGAGCCCCATCCCATGCTGCAGAAAGTAGTCCAGCA < 41bp 0.542877317835093 0.833508961373968 NA NA prediction 0.581263287077751 Functional Gain - REPS2 ENSG00000169891 CDS Human protein_coding chrX:17152004 chrX:17152003 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_14810 0 0 0 0 2 REPS2 chrX:17152030 5'GT 17152030 Upstream 28bp 14228 chr11 66190644 66190644 1 + G T KIRC 66190645 + 66190625 66190665 41 GAACTGCTTTGTAAATCATGGTATGGACTGCTGCACCCCGA GAACTGCTTTGTAAATCATTGTATGGACTGCTGCACCCCGA < 41bp 0.5354829514139 0.826104637394297 NA NA prediction 0.581243371960794 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190645 chr11:66190644 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14811 0 0 0 0 1 NPAS4 chr11:66190703 5'GT 66190703 Upstream 60bp 14229 chr7 129091497 129091497 1 + G T LUSC 129091498 + 129091478 129091518 41 TGGAAGAAGATGCCCAAAAGGCCTATATAATGGGACTCTTG TGGAAGAAGATGCCCAAAATGCCTATATAATGGGACTCTTG < 41bp 0.549961731389925 0.840572214467186 NA NA prediction 0.581220966154522 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129091498 chr7:129091497 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_14812 0 0 1 0 2 STRIP2 chr7:129091454 3'AG 129091454 Downstream 44bp 14230 chr7 129091497 129091497 1 + G T LUSC 129091498 + 129091478 129091518 41 TGGAAGAAGATGCCCAAAAGGCCTATATAATGGGACTCTTG TGGAAGAAGATGCCCAAAATGCCTATATAATGGGACTCTTG < 41bp 0.549961731389925 0.840572214467186 NA NA prediction 0.581220966154522 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129091498 chr7:129091497 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_14812 0 0 1 0 2 STRIP2 chr7:129091588 5'GT 129091588 Upstream 92bp 14231 chr19 52877668 52877668 1 + G T UCEC 52877669 + 52877649 52877689 41 TGGCAGGGAGTGCATCAAAGGTGTGAACGCAGGTAAGAGCT TGGCAGGGAGTGCATCAAATGTGTGAACGCAGGTAAGAGCT < 41bp 0.494975049728708 0.790602191136592 NA NA prediction 0.581204382273184 Functional Gain - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877669 chr19:52877668 nonsynonymous SNV 0.039 1 20 hm7G_associated_SNPs_14813 0 0 1 0 2 ZNF880 chr19:52877680 5'GT 52877680 Upstream 13bp 14232 chr19 52877668 52877668 1 + G T UCEC 52877669 + 52877649 52877689 41 TGGCAGGGAGTGCATCAAAGGTGTGAACGCAGGTAAGAGCT TGGCAGGGAGTGCATCAAATGTGTGAACGCAGGTAAGAGCT < 41bp 0.494975049728708 0.790602191136592 NA NA prediction 0.581204382273184 Functional Gain - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877669 chr19:52877668 nonsynonymous SNV 0.039 1 20 hm7G_associated_SNPs_14813 0 0 1 0 2 ZNF880 chr19:52877737 5'GT 52877737 Upstream 70bp 14233 chr9 137779063 137779063 1 + G T UCEC 137779064 + 137779044 137779084 41 CCTTCTCCACCAAAGACCAGGACAATGATCTTAACACCGGA CCTTCTCCACCAAAGACCATGACAATGATCTTAACACCGGA < 41bp 0.534956372139501 0.825555842398167 NA NA prediction 0.581198940517332 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137779064 chr9:137779063 nonsynonymous SNV 0.877 0 20 hm7G_associated_SNPs_14814 0 0 0 0 1 FCN2 chr9:137779014 3'AG 137779014 Downstream 50bp 14234 chr3 52817001 52817001 1 + G T LUAD 52817002 + 52816982 52817022 41 GCACTCCTTAAAATTCTGGGGGACATGCAGCCAGGGGACTA GCACTCCTTAAAATTCTGGTGGACATGCAGCCAGGGGACTA < 41bp 0.549186026910432 0.839782652655056 NA NA prediction 0.581193251489249 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52817002 chr3:52817001 nonsynonymous SNV 0.972 1 20 hm7G_associated_SNPs_14815 0 0 0 0 1 ITIH1 chr3:52816973 3'AG 52816973 Downstream 29bp 14235 chr12 56362585 56362585 1 + G T COAD 56362586 + 56362566 56362606 41 ATCTGTTCCAGCTGCTCCAGGGCCTAGCTTTCTGCCATTCT ATCTGTTCCAGCTGCTCCATGGCCTAGCTTTCTGCCATTCT < 41bp 0.545890805281912 0.836486070992803 NA NA prediction 0.581190531421782 Functional Gain - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56362586 chr12:56362585 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14816 0 0 1 0 1 CDK2 chr12:56362562 3'AG 56362562 Downstream 24bp 14236 chr19 16923619 16923619 1 + G T LUAD 16923620 + 16923600 16923640 41 TGACAAGTATGTGTACGTGGGCTTAAAGGATCGCTCTATAC TGACAAGTATGTGTACGTGTGCTTAAAGGATCGCTCTATAC < 41bp 0.472848133959098 0.790592988883916 NA NA prediction 0.581185977767831 Functional Gain - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16923620 chr19:16923619 nonsynonymous SNV 0.022 3 20 hm7G_associated_SNPs_14817 0 0 1 0 1 NWD1 chr19:16923661 5'GT 16923661 Upstream 43bp 14237 chr3 160149499 160149499 1 + G T LGG 160149500 + 160149480 160149520 41 TTTCGGTTCTAAGCCCAGAGGATCTTGAAGCGATCAAGAAT TTTCGGTTCTAAGCCCAGATGATCTTGAAGCGATCAAGAAT < 41bp 0.519891345309987 0.810477115705333 NA NA prediction 0.581171540790691 Functional Gain - SMC4 ENSG00000113810 CDS Human protein_coding chr3:160149500 chr3:160149499 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_14819 0 0 1 0 1 SMC4 chr3:160149431 3'AG 160149431 Downstream 69bp 14238 chr19 45419502 45419502 1 + G T PRAD 45419503 + 45419483 45419523 41 GTGCCTTGGATAAGCTGAAGGAGTTTGGAAACACACTGGAG GTGCCTTGGATAAGCTGAATGAGTTTGGAAACACACTGGAG < 41bp 0.519885769812445 0.810470904226466 NA NA prediction 0.581170268828042 Functional Gain - APOC1 ENSG00000130208 CDS Human protein_coding chr19:45419503 chr19:45419502 nonsynonymous SNV 0.912 3 20 hm7G_associated_SNPs_14820 0 0 1 2 2 APOC1 chr19:45419447 3'AG 45419447 Downstream 56bp 14239 chr19 45419502 45419502 1 + G T PRAD 45419503 + 45419483 45419523 41 GTGCCTTGGATAAGCTGAAGGAGTTTGGAAACACACTGGAG GTGCCTTGGATAAGCTGAATGAGTTTGGAAACACACTGGAG < 41bp 0.519885769812445 0.810470904226466 NA NA prediction 0.581170268828042 Functional Gain - APOC1 ENSG00000130208 CDS Human protein_coding chr19:45419503 chr19:45419502 nonsynonymous SNV 0.912 3 20 hm7G_associated_SNPs_14820 0 0 1 2 2 APOC1 chr19:45419582 5'GT 45419582 Upstream 81bp 14240 chr19 36218430 36218430 1 + G T UCEC 36218431 + 36218411 36218451 41 CGCAGCCCCGCTGGCGAGAGGCCCTGAGCGGGGCCCTCCAG CGCAGCCCCGCTGGCGAGATGCCCTGAGCGGGGCCCTCCAG < 41bp 0.460937805104251 0.790583793248891 NA NA prediction 0.581167586497783 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218431 chr19:36218430 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14821 0 0 1 0 2 KMT2B chr19:36218339 3'AG 36218339 Downstream 92bp 14241 chr19 36218430 36218430 1 + G T UCEC 36218431 + 36218411 36218451 41 CGCAGCCCCGCTGGCGAGAGGCCCTGAGCGGGGCCCTCCAG CGCAGCCCCGCTGGCGAGATGCCCTGAGCGGGGCCCTCCAG < 41bp 0.460937805104251 0.790583793248891 NA NA prediction 0.581167586497783 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218431 chr19:36218430 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14821 0 0 1 0 2 KMT2B chr19:36218523 5'GT 36218523 Upstream 94bp 14242 chr19 17263502 17263502 1 + G T UCEC 17263503 + 17263483 17263523 41 AGTCTCGCCTGGTGTCTCAGGAGAAGGATGAGAGGTAGGAG AGTCTCGCCTGGTGTCTCATGAGAAGGATGAGAGGTAGGAG < 41bp 0.464529019396425 0.790522153014417 NA NA prediction 0.581044306028834 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17263503 chr19:17263502 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_14825 0 0 1 0 2 MYO9B chr19:17263454 3'AG 17263454 Downstream 49bp 14243 chr19 17263502 17263502 1 + G T UCEC 17263503 + 17263483 17263523 41 AGTCTCGCCTGGTGTCTCAGGAGAAGGATGAGAGGTAGGAG AGTCTCGCCTGGTGTCTCATGAGAAGGATGAGAGGTAGGAG < 41bp 0.464529019396425 0.790522153014417 NA NA prediction 0.581044306028834 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17263503 chr19:17263502 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_14825 0 0 1 0 2 MYO9B chr19:17263516 5'GT 17263516 Upstream 15bp 14244 chr6 100056667 100056667 1 + G T LUAD 100056668 + 100056648 100056688 41 AGTCGGGGGGCTCCCCTCTGGAGTGGATAGGGTTAATCCGG AGTCGGGGGGCTCCCCTCTTGAGTGGATAGGGTTAATCCGG < 41bp 0.463061660390319 0.790521047921965 NA NA prediction 0.581042095843929 Functional Gain - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056668 chr6:100056667 stopgain . 0 20 hm7G_associated_SNPs_14826 0 0 0 0 2 PRDM13 chr6:100056617 3'AG 100056617 Downstream 51bp 14245 chr6 100056667 100056667 1 + G T LUAD 100056668 + 100056648 100056688 41 AGTCGGGGGGCTCCCCTCTGGAGTGGATAGGGTTAATCCGG AGTCGGGGGGCTCCCCTCTTGAGTGGATAGGGTTAATCCGG < 41bp 0.463061660390319 0.790521047921965 NA NA prediction 0.581042095843929 Functional Gain - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056668 chr6:100056667 stopgain . 0 20 hm7G_associated_SNPs_14826 0 0 0 0 2 PRDM13 chr6:100056748 5'GT 100056748 Upstream 82bp 14246 chr19 56539809 56539809 1 + G T LUAD 56539810 + 56539790 56539830 41 CCGTATTTGCGGAAAATTCGGGTGGATGTCAAAGGGATCTT CCGTATTTGCGGAAAATTCTGGTGGATGTCAAAGGGATCTT < 41bp 0.4791891124689 0.790517190043661 NA NA prediction 0.581034380087321 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56539810 chr19:56539809 nonsynonymous SNV 0.021 4 20 hm7G_associated_SNPs_14827 0 0 0 0 1 NLRP5 chr19:56539875 5'GT 56539875 Upstream 67bp 14247 chr1 161823061 161823061 1 + G T SKCM 161823062 + 161823042 161823082 41 CATAGACATGAAGTAGAAAGGACCAAGTCAAGAAGAATGAC CATAGACATGAAGTAGAAATGACCAAGTCAAGAAGAATGAC < 41bp 0.498005459412601 0.790508470904933 NA NA prediction 0.581016941809865 Functional Gain - ATF6 ENSG00000118217 CDS Human protein_coding chr1:161823062 chr1:161823061 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14828 0 0 1 0 2 ATF6 chr1:161823014 3'AG 161823014 Downstream 48bp 14248 chr1 161823061 161823061 1 + G T SKCM 161823062 + 161823042 161823082 41 CATAGACATGAAGTAGAAAGGACCAAGTCAAGAAGAATGAC CATAGACATGAAGTAGAAATGACCAAGTCAAGAAGAATGAC < 41bp 0.498005459412601 0.790508470904933 NA NA prediction 0.581016941809865 Functional Gain - ATF6 ENSG00000118217 CDS Human protein_coding chr1:161823062 chr1:161823061 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14828 0 0 1 0 2 ATF6 chr1:161823113 5'GT 161823113 Upstream 53bp 14249 chr8 42177143 42177143 1 + G T CESC 42177144 + 42177124 42177164 41 CCTGGAGGGAAATGGAGCAGGCTGTGGAGCTCTGTGGGCGG CCTGGAGGGAAATGGAGCATGCTGTGGAGCTCTGTGGGCGG < 41bp 0.471648085125664 0.790501874150731 NA NA prediction 0.581003748301462 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42177144 chr8:42177143 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14829 0 0 1 0 2 IKBKB chr8:42177103 3'AG 42177103 Downstream 41bp 14250 chr8 42177143 42177143 1 + G T CESC 42177144 + 42177124 42177164 41 CCTGGAGGGAAATGGAGCAGGCTGTGGAGCTCTGTGGGCGG CCTGGAGGGAAATGGAGCATGCTGTGGAGCTCTGTGGGCGG < 41bp 0.471648085125664 0.790501874150731 NA NA prediction 0.581003748301462 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42177144 chr8:42177143 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14829 0 0 1 0 2 IKBKB chr8:42177164 5'GT 42177164 Upstream 22bp 14251 chr9 35398267 35398267 1 + G T UCEC 35398268 + 35398248 35398288 41 AGCTGGAGAAAATGTTTGAGGCCATGGGAGGCAAGGAGGTA AGCTGGAGAAAATGTTTGATGCCATGGGAGGCAAGGAGGTA < 41bp 0.551514452768209 0.842015821872375 NA NA prediction 0.581002738208331 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35398268 chr9:35398267 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14830 0 0 1 0 2 UNC13B chr9:35398208 3'AG 35398208 Downstream 60bp 14252 chr9 35398267 35398267 1 + G T UCEC 35398268 + 35398248 35398288 41 AGCTGGAGAAAATGTTTGAGGCCATGGGAGGCAAGGAGGTA AGCTGGAGAAAATGTTTGATGCCATGGGAGGCAAGGAGGTA < 41bp 0.551514452768209 0.842015821872375 NA NA prediction 0.581002738208331 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35398268 chr9:35398267 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14830 0 0 1 0 2 UNC13B chr9:35398285 5'GT 35398285 Upstream 19bp 14253 chrX 18606111 18606111 1 + G T LUAD 18606112 + 18606092 18606132 41 CGTGGACATGTGGTCGGTGGGCTGTATTCTTGGGGAGCTTA CGTGGACATGTGGTCGGTGTGCTGTATTCTTGGGGAGCTTA < 41bp 0.547710968038346 0.83819535096705 NA NA prediction 0.580968765857407 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18606112 chrX:18606111 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14831 0 0 0 0 1 CDKL5 chrX:18606074 3'AG 18606074 Downstream 38bp 14254 chr7 141820169 141820169 1 + G T ESCA 141820170 + 141820150 141820190 41 TAGACTGCACACCTGACCAGGAGGTGACCGAGGTCAGAGAA TAGACTGCACACCTGACCATGAGGTGACCGAGGTCAGAGAA < 41bp 0.480378980171016 0.790478953198802 NA NA prediction 0.580957906397605 Functional Gain - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141820170 chr7:141820169 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_14832 0 0 0 0 2 MGAM2 chr7:141820102 3'AG 141820102 Downstream 68bp 14255 chr7 141820169 141820169 1 + G T ESCA 141820170 + 141820150 141820190 41 TAGACTGCACACCTGACCAGGAGGTGACCGAGGTCAGAGAA TAGACTGCACACCTGACCATGAGGTGACCGAGGTCAGAGAA < 41bp 0.480378980171016 0.790478953198802 NA NA prediction 0.580957906397605 Functional Gain - MGAM2 ENSG00000257743 CDS Human protein_coding chr7:141820170 chr7:141820169 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_14832 0 0 0 0 2 MGAM2 chr7:141820181 5'GT 141820181 Upstream 13bp 14256 chr2 75100426 75100426 1 + G T GBM 75100427 + 75100407 75100447 41 TCCTGGTCTCATGGACCAAGGGATTCAAGTCCAGTGGAGTG TCCTGGTCTCATGGACCAATGGATTCAAGTCCAGTGGAGTG < 41bp 0.549424871261868 0.839898720554712 NA NA prediction 0.580947698585687 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75100427 chr2:75100426 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14833 0 0 0 0 1 HK2 chr2:75100498 5'GT 75100498 Upstream 73bp 14257 chr17 18874460 18874460 1 + G T UCEC 18874461 + 18874441 18874481 41 GTTTCGAGACCCCCACACAGGGGACCTGCCGTGGACCGGGA GTTTCGAGACCCCCACACATGGGACCTGCCGTGGACCGGGA < 41bp 0.452186786512484 0.790439761304747 NA NA prediction 0.580879522609495 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18874461 chr17:18874460 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14835 0 0 0 0 1 SLC5A10 chr17:18874531 5'GT 18874531 Upstream 72bp 14258 chr21 40977119 40977119 1 + G T rs139920016 40977120 + 40977100 40977140 41 AGCAAGGAGAAGTCTAACAGGCAGGAGGAGGGGAGACACAA AGCAAGGAGAAGTCTAACATGCAGGAGGAGGGGAGACACAA < 41bp 0.505458989065238 0.795895978861223 NA NA prediction 0.58087397959197 Functional Gain - B3GALT5-AS1 ENSG00000183778 UTR5 Human protein_coding chr21:40977120 chr21:40977119 . . 0 20 hm7G_associated_SNPs_14836 0 0 0 0 2 B3GALT5-AS1 chr21:40977021 3'AG 40977021 Downstream 99bp 14259 chr21 40977119 40977119 1 + G T rs139920016 40977120 + 40977100 40977140 41 AGCAAGGAGAAGTCTAACAGGCAGGAGGAGGGGAGACACAA AGCAAGGAGAAGTCTAACATGCAGGAGGAGGGGAGACACAA < 41bp 0.505458989065238 0.795895978861223 NA NA prediction 0.58087397959197 Functional Gain - B3GALT5-AS1 ENSG00000183778 UTR5 Human protein_coding chr21:40977120 chr21:40977119 . . 0 20 hm7G_associated_SNPs_14836 0 0 0 0 2 B3GALT5-AS1 chr21:40977152 5'GT 40977152 Upstream 34bp 14260 chr7 87022093 87022093 1 + G T UCEC 87022094 + 87022074 87022114 41 ACTCATAGCAAAAGAGGAAGGTCTTCCTGTTCCAGAACTCT ACTCATAGCAAAAGAGGAATGTCTTCCTGTTCCAGAACTCT < 41bp 0.484444715484723 0.790434098620242 NA NA prediction 0.580868197240484 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:87022094 chr7:87022093 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14838 0 0 0 0 2 CROT chr7:87022046 3'AG 87022046 Downstream 48bp 14261 chr7 87022093 87022093 1 + G T UCEC 87022094 + 87022074 87022114 41 ACTCATAGCAAAAGAGGAAGGTCTTCCTGTTCCAGAACTCT ACTCATAGCAAAAGAGGAATGTCTTCCTGTTCCAGAACTCT < 41bp 0.484444715484723 0.790434098620242 NA NA prediction 0.580868197240484 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:87022094 chr7:87022093 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14838 0 0 0 0 2 CROT chr7:87022139 5'GT 87022139 Upstream 47bp 14262 chr7 901072 901072 1 + G T LUAD 901073 + 901053 901093 41 TATTCCCAAGATAAGACCGGGATGGTGGACTTTGCTCTGGA TATTCCCAAGATAAGACCGTGATGGTGGACTTTGCTCTGGA < 41bp 0.4681821602111 0.790430413047848 NA NA prediction 0.580860826095696 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:901073 chr7:901072 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_14840 0 0 1 0 2 SUN1 chr7:901017 3'AG 901017 Downstream 56bp 14263 chr7 901072 901072 1 + G T LUAD 901073 + 901053 901093 41 TATTCCCAAGATAAGACCGGGATGGTGGACTTTGCTCTGGA TATTCCCAAGATAAGACCGTGATGGTGGACTTTGCTCTGGA < 41bp 0.4681821602111 0.790430413047848 NA NA prediction 0.580860826095696 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:901073 chr7:901072 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_14840 0 0 1 0 2 SUN1 chr7:901101 5'GT 901101 Upstream 30bp 14264 chr3 128060647 128060647 1 + G T UCEC 128060648 + 128060628 128060668 41 CATGGCATCCTGCTCCACGGGCTAGAGGACAGGAACTACGC CATGGCATCCTGCTCCACGTGCTAGAGGACAGGAACTACGC < 41bp 0.485947200567601 0.790430131403173 NA NA prediction 0.580860262806347 Functional Gain - EEFSEC ENSG00000132394 CDS Human protein_coding chr3:128060648 chr3:128060647 nonsynonymous SNV 0.757 1 20 hm7G_associated_SNPs_14841 0 0 0 0 1 EEFSEC chr3:128060732 5'GT 128060732 Upstream 86bp 14265 chr2 33749040 33749040 1 + G T LUAD 33749041 + 33749021 33749061 41 TTTAATGGAATCTCTAAGTGGGTCCAGTTGATGGTTCTTAG TTTAATGGAATCTCTAAGTTGGTCCAGTTGATGGTTCTTAG < 41bp 0.544981726330684 0.835411035266026 NA NA prediction 0.580858617870684 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33749041 chr2:33749040 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14842 0 0 0 0 2 RASGRP3 chr2:33748946 3'AG 33748946 Downstream 95bp 14266 chr2 33749040 33749040 1 + G T LUAD 33749041 + 33749021 33749061 41 TTTAATGGAATCTCTAAGTGGGTCCAGTTGATGGTTCTTAG TTTAATGGAATCTCTAAGTTGGTCCAGTTGATGGTTCTTAG < 41bp 0.544981726330684 0.835411035266026 NA NA prediction 0.580858617870684 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33749041 chr2:33749040 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14842 0 0 0 0 2 RASGRP3 chr2:33749119 5'GT 33749119 Upstream 80bp 14267 chr14 57075934 57075934 1 + G T UCEC 57075935 + 57075915 57075955 41 ATCACGCCCGGTGGACCTGGGGAGACCAGACAACACTGCAA ATCACGCCCGGTGGACCTGTGGAGACCAGACAACACTGCAA < 41bp 0.539603254340646 0.830025801897698 NA NA prediction 0.580845095114104 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57075935 chr14:57075934 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14843 0 0 0 1 1 TMEM260 chr14:57076003 5'GT 57076003 Upstream 70bp 14268 chr1 151039791 151039791 1 + G T UCEC 151039792 + 151039772 151039812 41 GTCGGAGCTGGAAGGCCTGGGTCTGTCAGATACAGCCACCT GTCGGAGCTGGAAGGCCTGTGTCTGTCAGATACAGCCACCT < 41bp 0.517544554114494 0.807966736155474 NA NA prediction 0.58084436408196 Functional Gain - MLLT11 ENSG00000213190 CDS Human other chr1:151039792 chr1:151039791 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14844 0 0 1 0 1 MLLT11 chr1:151039695 3'AG 151039695 Downstream 97bp 14269 chr22 42422817 42422817 1 + G T LUSC 42422818 + 42422798 42422838 41 ATATGGAGCCCCACCTCCCGGATACGGAGCCCCACCTGCAG ATATGGAGCCCCACCTCCCTGATACGGAGCCCCACCTGCAG < 41bp 0.485052836647331 0.790390594851801 NA NA prediction 0.580781189703603 Functional Gain - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42422818 chr22:42422817 stopgain 0.000 0 20 hm7G_associated_SNPs_14847 0 0 0 0 1 WBP2NL chr22:42422770 3'AG 42422770 Downstream 48bp 14270 chr11 124949054 124949054 1 + G T COAD 124949055 + 124949035 124949075 41 CCGTTACTACCTCTCAGCTGGAATGCTGCTCAGTGGCCTTT CCGTTACTACCTCTCAGCTTGAATGCTGCTCAGTGGCCTTT < 41bp 0.565068006669994 0.855442261829844 NA NA prediction 0.580748510319701 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124949055 chr11:124949054 stopgain 0.992 1 20 hm7G_associated_SNPs_14849 0 0 0 0 2 SLC37A2 chr11:124949008 3'AG 124949008 Downstream 47bp 14271 chr11 124949054 124949054 1 + G T COAD 124949055 + 124949035 124949075 41 CCGTTACTACCTCTCAGCTGGAATGCTGCTCAGTGGCCTTT CCGTTACTACCTCTCAGCTTGAATGCTGCTCAGTGGCCTTT < 41bp 0.565068006669994 0.855442261829844 NA NA prediction 0.580748510319701 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124949055 chr11:124949054 stopgain 0.992 1 20 hm7G_associated_SNPs_14849 0 0 0 0 2 SLC37A2 chr11:124949143 5'GT 124949143 Upstream 90bp 14272 chr2 233431861 233431861 1 + G T THCA 233431862 + 233431842 233431882 41 CGAATCCGGGACACACTTCGGCGAGTGCTTAACCTACCTCC CGAATCCGGGACACACTTCTGCGAGTGCTTAACCTACCTCC < 41bp 0.470594907175148 0.79036283636355 NA NA prediction 0.5807256727271 Functional Gain - EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233431862 chr2:233431861 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_14850 0 0 1 0 2 EIF4E2 chr2:233431788 3'AG 233431788 Downstream 74bp 14273 chr2 233431861 233431861 1 + G T THCA 233431862 + 233431842 233431882 41 CGAATCCGGGACACACTTCGGCGAGTGCTTAACCTACCTCC CGAATCCGGGACACACTTCTGCGAGTGCTTAACCTACCTCC < 41bp 0.470594907175148 0.79036283636355 NA NA prediction 0.5807256727271 Functional Gain - EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233431862 chr2:233431861 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_14850 0 0 1 0 2 EIF4E2 chr2:233431924 5'GT 233431924 Upstream 64bp 14274 chr3 43095027 43095027 1 + G T UCEC 43095028 + 43095008 43095048 41 CACAGGTCCACGACCGCTTGGATCGCTACTGCTGTGGCTTC CACAGGTCCACGACCGCTTTGATCGCTACTGCTGTGGCTTC < 41bp 0.463892753829581 0.790346053294895 NA NA prediction 0.580692106589789 Functional Gain - FAM198A ENSG00000144649;ENSG00000273291 CDS Human other chr3:43095028 chr3:43095027 stopgain 0.999 4 20 hm7G_associated_SNPs_14853 0 0 0 0 1 FAM198A chr3:43095013 3'AG 43095013 Downstream 15bp 14275 chr11 8123070 8123070 1 + G T LUAD 8123071 + 8123051 8123091 41 AGTTTGGCCGGGTAGCAGAGGATGTGTTCACCATGGATTAC AGTTTGGCCGGGTAGCAGATGATGTGTTCACCATGGATTAC < 41bp 0.516135205301801 0.806468336427341 NA NA prediction 0.580666262251079 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8123071 chr11:8123070 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_14855 0 0 1 0 1 TUB chr11:8123033 3'AG 8123033 Downstream 38bp 14276 chr15 42703188 42703188 1 + G T STAD 42703189 + 42703169 42703209 41 GCTGCTTCGTTAGGCTGGAGGGCATGTTCAGTAAGTGGGAG GCTGCTTCGTTAGGCTGGATGGCATGTTCAGTAAGTGGGAG < 41bp 0.485070438789905 0.790313704334709 NA NA prediction 0.580627408669419 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42703189 chr15:42703188 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14857 0 0 0 0 1 CAPN3 chr15:42703198 5'GT 42703198 Upstream 11bp 14277 chr5 5447541 5447541 1 + G T SARC 5447542 + 5447522 5447562 41 GCTTCATTGGACTTAAAGAGGCTGCTGTCAAGCAAACTCAG GCTTCATTGGACTTAAAGATGCTGCTGTCAAGCAAACTCAG < 41bp 0.521631694795542 0.811939432144118 NA NA prediction 0.580615474697153 Functional Gain - ICE1 ENSG00000164151 CDS Human protein_coding chr5:5447542 chr5:5447541 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_14858 0 0 1 0 2 ICE1 chr5:5447540 3'AG 5447540 Downstream 2bp 14278 chr5 5447541 5447541 1 + G T SARC 5447542 + 5447522 5447562 41 GCTTCATTGGACTTAAAGAGGCTGCTGTCAAGCAAACTCAG GCTTCATTGGACTTAAAGATGCTGCTGTCAAGCAAACTCAG < 41bp 0.521631694795542 0.811939432144118 NA NA prediction 0.580615474697153 Functional Gain - ICE1 ENSG00000164151 CDS Human protein_coding chr5:5447542 chr5:5447541 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_14858 0 0 1 0 2 ICE1 chr5:5447622 5'GT 5447622 Upstream 82bp 14279 chr20 60772994 60772994 1 + G T UCEC 60772995 + 60772975 60773015 41 AGGGAGTAAAAACTGCTTCGGGCGCAGTGGCGCCGTCCTCT AGGGAGTAAAAACTGCTTCTGGCGCAGTGGCGCCGTCCTCT < 41bp 0.56048852183501 0.850778209952097 NA NA prediction 0.580579376234172 Functional Gain - MTG2 ENSG00000101181 CDS Human protein_coding chr20:60772995 chr20:60772994 nonsynonymous SNV 0.019 4 20 hm7G_associated_SNPs_14859 0 0 1 0 2 MTG2 chr20:60772908 3'AG 60772908 Downstream 87bp 14280 chr20 60772994 60772994 1 + G T UCEC 60772995 + 60772975 60773015 41 AGGGAGTAAAAACTGCTTCGGGCGCAGTGGCGCCGTCCTCT AGGGAGTAAAAACTGCTTCTGGCGCAGTGGCGCCGTCCTCT < 41bp 0.56048852183501 0.850778209952097 NA NA prediction 0.580579376234172 Functional Gain - MTG2 ENSG00000101181 CDS Human protein_coding chr20:60772995 chr20:60772994 nonsynonymous SNV 0.019 4 20 hm7G_associated_SNPs_14859 0 0 1 0 2 MTG2 chr20:60773023 5'GT 60773023 Upstream 30bp 14281 chr17 18862523 18862523 1 + G T UCEC 18862524 + 18862504 18862544 41 GGGCTCAGGCGCGGCAGGAGGTCTGGCCGTGGCAGGCTTCG GGGCTCAGGCGCGGCAGGATGTCTGGCCGTGGCAGGCTTCG < 41bp 0.467234688576601 0.790288640111197 NA NA prediction 0.580577280222393 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18862524 chr17:18862523 nonsynonymous SNV 0.406 5 20 hm7G_associated_SNPs_14860 0 0 0 0 2 SLC5A10 chr17:18862448 3'AG 18862448 Downstream 76bp 14282 chr17 18862523 18862523 1 + G T UCEC 18862524 + 18862504 18862544 41 GGGCTCAGGCGCGGCAGGAGGTCTGGCCGTGGCAGGCTTCG GGGCTCAGGCGCGGCAGGATGTCTGGCCGTGGCAGGCTTCG < 41bp 0.467234688576601 0.790288640111197 NA NA prediction 0.580577280222393 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18862524 chr17:18862523 nonsynonymous SNV 0.406 5 20 hm7G_associated_SNPs_14860 0 0 0 0 2 SLC5A10 chr17:18862552 5'GT 18862552 Upstream 30bp 14283 chr11 1861865 1861865 1 + G T THYM 1861866 + 1861846 1861886 41 GCCCGCCGCTGCATATCCCGGGCTCCATGTCTGAAGTGCAG GCCCGCCGCTGCATATCCCTGGCTCCATGTCTGAAGTGCAG < 41bp 0.466286026152033 0.790255553699382 NA NA prediction 0.580511107398765 Functional Gain - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1861866 chr11:1861865 synonymous SNV . 0 20 hm7G_associated_SNPs_14863 0 0 0 0 1 TNNI2 chr11:1861886 5'GT 1861886 Upstream 22bp 14284 chr19 47863303 47863303 1 + G T HNSC 47863304 + 47863284 47863324 41 GACCTCAGTCACCATTGACGGGATCCGCTTCGTAGTAGATT GACCTCAGTCACCATTGACTGGATCCGCTTCGTAGTAGATT < 41bp 0.462319917066397 0.790248914069317 NA NA prediction 0.580497828138634 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47863304 chr19:47863303 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14864 0 0 1 0 2 DHX34 chr19:47863225 3'AG 47863225 Downstream 79bp 14285 chr19 47863303 47863303 1 + G T HNSC 47863304 + 47863284 47863324 41 GACCTCAGTCACCATTGACGGGATCCGCTTCGTAGTAGATT GACCTCAGTCACCATTGACTGGATCCGCTTCGTAGTAGATT < 41bp 0.462319917066397 0.790248914069317 NA NA prediction 0.580497828138634 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47863304 chr19:47863303 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14864 0 0 1 0 2 DHX34 chr19:47863327 5'GT 47863327 Upstream 25bp 14286 chr1 79102784 79102784 1 + G T UCEC 79102785 + 79102765 79102805 41 TCTCCATCTCTGAAGGACAGGATTCACTGTGTGGCTTATGT TCTCCATCTCTGAAGGACATGATTCACTGTGTGGCTTATGT < 41bp 0.519356665869715 0.809603925698949 NA NA prediction 0.580494519658469 Functional Gain - IFI44L ENSG00000137959 CDS Human protein_coding chr1:79102785 chr1:79102784 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_14865 0 0 0 0 1 IFI44L chr1:79102717 3'AG 79102717 Downstream 68bp 14287 chr17 48557113 48557113 1 + G T STAD 48557114 + 48557094 48557134 41 GACGCTGCTGCGGCTCAGCGGGGTGCAACGGTGGGTAGTGG GACGCTGCTGCGGCTCAGCTGGGTGCAACGGTGGGTAGTGG < 41bp 0.549038851937276 0.839282686761048 NA NA prediction 0.580487669647544 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557114 chr17:48557113 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_14867 0 0 1 0 1 RSAD1 chr17:48557123 5'GT 48557123 Upstream 11bp 14288 chr19 4433137 4433137 1 + G T LUAD 4433138 + 4433118 4433158 41 TCATCATCCGGGAGTTCCAGGAGCACTGCCGCCGGGGACTG TCATCATCCGGGAGTTCCATGAGCACTGCCGCCGGGGACTG < 41bp 0.550922178798891 0.841163316934269 NA NA prediction 0.580482276270757 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4433138 chr19:4433137 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14868 0 0 1 0 1 CHAF1A chr19:4433067 3'AG 4433067 Downstream 71bp 14289 chr17 79768987 79768987 1 + G T rs529078630 79768988 + 79768968 79769008 41 CTCCCAGTGCCAGATGGATGGCGAGGAGATTGAGGTCCAGG CTCCCAGTGCCAGATGGATTGCGAGGAGATTGAGGTCCAGG < 41bp 0.546891810891823 0.837132665871432 NA NA prediction 0.580481709959219 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79768988 chr17:79768987 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_14869 0 0 0 0 1 GCGR chr17:79769007 5'GT 79769007 Upstream 21bp 14290 chr3 185300562 185300562 1 + G T ESCA 185300563 + 185300543 185300583 41 TCACCCATGTCTCTACTGTGGACCACAGGACAGCGAAGGCA TCACCCATGTCTCTACTGTTGACCACAGGACAGCGAAGGCA < 41bp 0.491177330252489 0.790235670611193 NA NA prediction 0.580471341222386 Functional Gain - LIPH;SENP2 ENSG00000163904 CDS Human protein_coding chr3:185300563 chr3:185300562 stopgain 0.957 0 20 hm7G_associated_SNPs_14870 0 0 0 0 1 LIPH;SENP2 chr3:185300605 5'GT 185300605 Upstream 44bp 14291 chrX 100075435 100075435 1 + G T GBM 100075436 + 100075416 100075456 41 TGACTGTGAGAGACCCAGCGGTGGATCGTTCTCTACGTTCT TGACTGTGAGAGACCCAGCTGTGGATCGTTCTCTACGTTCT < 41bp 0.490893842333399 0.790233455279124 NA NA prediction 0.580466910558249 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100075436 chrX:100075435 synonymous SNV . 0 20 hm7G_associated_SNPs_14871 0 0 1 0 1 CSTF2 chrX:100075463 5'GT 100075463 Upstream 29bp 14292 chrX 147014271 147014271 1 + G T UCEC 147014272 + 147014252 147014292 41 GATGTAATACAAGTTCCAAGGAACTTAGTAGGTAAGTCAGA GATGTAATACAAGTTCCAATGAACTTAGTAGGTAAGTCAGA < 41bp 0.506061247559047 0.796291444625925 NA NA prediction 0.580460394133755 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147014272 chrX:147014271 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_14872 0 0 1 0 2 FMR1 chrX:147014204 3'AG 147014204 Downstream 68bp 14293 chrX 147014271 147014271 1 + G T UCEC 147014272 + 147014252 147014292 41 GATGTAATACAAGTTCCAAGGAACTTAGTAGGTAAGTCAGA GATGTAATACAAGTTCCAATGAACTTAGTAGGTAAGTCAGA < 41bp 0.506061247559047 0.796291444625925 NA NA prediction 0.580460394133755 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147014272 chrX:147014271 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_14872 0 0 1 0 2 FMR1 chrX:147014282 5'GT 147014282 Upstream 12bp 14294 chr14 89319359 89319359 1 + G T UCEC 89319360 + 89319340 89319380 41 CAGAACATTCTCAGTACAAGGACTGGTGGTGGAAAGTACAG CAGAACATTCTCAGTACAATGACTGGTGGTGGAAAGTACAG < 41bp 0.540922377565204 0.831151926843891 NA NA prediction 0.580459098557375 Functional Gain - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89319360 chr14:89319359 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14873 0 0 1 1 1 TTC8 chr14:89319315 3'AG 89319315 Downstream 45bp 14295 chr2 209324626 209324626 1 + G T HNSC 209324627 + 209324607 209324647 41 TTCAATGTCTCAGGTGCTGGGAACTTAGTGCTGGAGACATC TTCAATGTCTCAGGTGCTGTGAACTTAGTGCTGGAGACATC < 41bp 0.490940156464379 0.790201185385739 NA NA prediction 0.580402370771479 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209324627 chr2:209324626 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14877 0 0 0 0 2 PTH2R chr2:209324620 3'AG 209324620 Downstream 7bp 14296 chr2 209324626 209324626 1 + G T HNSC 209324627 + 209324607 209324647 41 TTCAATGTCTCAGGTGCTGGGAACTTAGTGCTGGAGACATC TTCAATGTCTCAGGTGCTGTGAACTTAGTGCTGGAGACATC < 41bp 0.490940156464379 0.790201185385739 NA NA prediction 0.580402370771479 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209324627 chr2:209324626 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_14877 0 0 0 0 2 PTH2R chr2:209324686 5'GT 209324686 Upstream 61bp 14297 chr4 103527745 103527745 1 + G T rs149211506 103527746 + 103527726 103527766 41 TGAGCCTTCTGGACCGCTTGGGTAACTCTGTTTTGCACCTA TGAGCCTTCTGGACCGCTTTGGTAACTCTGTTTTGCACCTA < 41bp 0.452769731017203 0.790193137539112 NA NA prediction 0.580386275078224 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103527746 chr4:103527745 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_14879 0 0 1 0 1 NFKB1 chr4:103527653 3'AG 103527653 Downstream 93bp 14298 chr8 56859038 56859038 1 + G T UCEC 56859039 + 56859019 56859059 41 CAGCTTTTACCTGGACAGAGGTTTCAAACTAAAGGTATGTT CAGCTTTTACCTGGACAGATGTTTCAAACTAAAGGTATGTT < 41bp 0.507571667673043 0.797764618803306 NA NA prediction 0.580385902260527 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56859039 chr8:56859038 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_14880 0 0 1 0 2 LYN chr8:56859007 3'AG 56859007 Downstream 32bp 14299 chr8 56859038 56859038 1 + G T UCEC 56859039 + 56859019 56859059 41 CAGCTTTTACCTGGACAGAGGTTTCAAACTAAAGGTATGTT CAGCTTTTACCTGGACAGATGTTTCAAACTAAAGGTATGTT < 41bp 0.507571667673043 0.797764618803306 NA NA prediction 0.580385902260527 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56859039 chr8:56859038 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_14880 0 0 1 0 2 LYN chr8:56859052 5'GT 56859052 Upstream 15bp 14300 chr13 114541145 114541145 1 - C A UCEC 114541144 - 114541124 114541164 41 ATGTCAACGAATGCAGCCAGGAGAACGGGGGCTGCCTCCAG ATGTCAACGAATGCAGCCATGAGAACGGGGGCTGCCTCCAG < 41bp 0.528140044712151 0.818321543018749 NA NA prediction 0.580362996613195 Functional Gain - GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541144 chr13:114541145 nonsynonymous SNV 0.104 1 20 hm7G_associated_SNPs_14882 0 0 0 0 1 GAS6 chr13:114541164 3'AG 114541164 Downstream 20bp 14301 chr18 33800118 33800118 1 + G T LUAD 33800119 + 33800099 33800139 41 AGTCAGAAGCAGGAACCCCGGCTCTGCCTGATCCAGCCCTT AGTCAGAAGCAGGAACCCCTGCTCTGCCTGATCCAGCCCTT < 41bp 0.558604253959413 0.848772697445114 NA NA prediction 0.580336886971402 Functional Gain - MOCOS ENSG00000075643 CDS Human protein_coding chr18:33800119 chr18:33800118 nonsynonymous SNV 0.875 2 20 hm7G_associated_SNPs_14883 0 0 1 0 1 MOCOS chr18:33800180 5'GT 33800180 Upstream 63bp 14302 chr2 28521328 28521328 1 + G T LUAD 28521329 + 28521309 28521349 41 TATCCGTACAGCCCCAGATGGGATGGAAATGAAATGGCCAA TATCCGTACAGCCCCAGATTGGATGGAAATGAAATGGCCAA < 41bp 0.513623331879894 0.803771989583443 NA NA prediction 0.580297315407098 Functional Gain - BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521329 chr2:28521328 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14885 0 0 1 1 1 BABAM2 chr2:28521358 5'GT 28521358 Upstream 31bp 14303 chr1 47489602 47489602 1 + G T LUSC 47489603 + 47489583 47489623 41 CTGTACCTGCGGAGGCAGCGGCTGCTGCGGGACCTGCGCCC CTGTACCTGCGGAGGCAGCTGCTGCTGCGGGACCTGCGCCC < 41bp 0.540407693466287 0.830551437468664 NA NA prediction 0.580287488004754 Functional Gain - CYP4X1 ENSG00000186377 CDS Human protein_coding chr1:47489603 chr1:47489602 nonsynonymous SNV 0.962 0 20 hm7G_associated_SNPs_14886 0 0 0 0 1 CYP4X1 chr1:47489666 5'GT 47489666 Upstream 65bp 14304 chr16 1810516 1810516 1 + G T LUSC 1810517 + 1810497 1810537 41 AAAACCGTATCAAGGAGCTGGAAGAGGAACTGAAAAGGTGA AAAACCGTATCAAGGAGCTTGAAGAGGAACTGAAAAGGTGA < 41bp 0.46422664455255 0.790137279324565 NA NA prediction 0.580274558649131 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1810517 chr16:1810516 synonymous SNV . 0 20 hm7G_associated_SNPs_14888 0 0 1 0 1 MAPK8IP3 chr16:1810533 5'GT 1810533 Upstream 18bp 14305 chr7 129062691 129062691 1 + G T GBM 129062692 + 129062672 129062712 41 GTGTTCCAGGCGAGTCTGCGGACACCAGAACTGACCTGGGA GTGTTCCAGGCGAGTCTGCTGACACCAGAACTGACCTGGGA < 41bp 0.470361812917447 0.790124239102924 NA NA prediction 0.580248478205847 Functional Gain - AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129062692 chr7:129062691 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14889 0 0 0 0 2 AHCYL2 chr7:129062681 3'AG 129062681 Downstream 11bp 14306 chr7 129062691 129062691 1 + G T GBM 129062692 + 129062672 129062712 41 GTGTTCCAGGCGAGTCTGCGGACACCAGAACTGACCTGGGA GTGTTCCAGGCGAGTCTGCTGACACCAGAACTGACCTGGGA < 41bp 0.470361812917447 0.790124239102924 NA NA prediction 0.580248478205847 Functional Gain - AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129062692 chr7:129062691 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14889 0 0 0 0 2 AHCYL2 chr7:129062779 5'GT 129062779 Upstream 89bp 14307 chr8 67743532 67743532 1 + G T UCEC 67743533 + 67743513 67743553 41 CTTAAAAGTTATTGGAAAAGGCAGCTTTGGCAAGGTAAGAG CTTAAAAGTTATTGGAAAATGCAGCTTTGGCAAGGTAAGAG < 41bp 0.52163226088865 0.811749313999156 NA NA prediction 0.580234106221012 Functional Gain - C8orf44-SGK3;SGK3 ENSG00000104205;ENSG00000270024 CDS Human other chr8:67743533 chr8:67743532 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14890 0 0 0 0 2 C8orf44-SGK3;SGK3 chr8:67743489 3'AG 67743489 Downstream 44bp 14308 chr8 67743532 67743532 1 + G T UCEC 67743533 + 67743513 67743553 41 CTTAAAAGTTATTGGAAAAGGCAGCTTTGGCAAGGTAAGAG CTTAAAAGTTATTGGAAAATGCAGCTTTGGCAAGGTAAGAG < 41bp 0.52163226088865 0.811749313999156 NA NA prediction 0.580234106221012 Functional Gain - C8orf44-SGK3;SGK3 ENSG00000104205;ENSG00000270024 CDS Human other chr8:67743533 chr8:67743532 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14890 0 0 0 0 2 C8orf44-SGK3;SGK3 chr8:67743546 5'GT 67743546 Upstream 15bp 14309 chr18 52262284 52262284 1 + G T STAD 52262285 + 52262265 52262305 41 TGGGGTCTGCGTGAACCCAGGAATCCTTGCACATTCAAGAT TGGGGTCTGCGTGAACCCATGAATCCTTGCACATTCAAGAT < 41bp 0.528433395459088 0.818547633619907 NA NA prediction 0.580228476321637 Functional Gain - DYNAP ENSG00000178690 CDS Human protein_coding chr18:52262285 chr18:52262284 stopgain 0.396 0 20 hm7G_associated_SNPs_14891 0 0 0 0 1 DYNAP chr18:52262334 5'GT 52262334 Upstream 51bp 14310 chr14 105207510 105207510 1 + G T UCEC 105207511 + 105207491 105207531 41 GTGTTTACTTTATGTATGAGGCACTCCACGGCCCCCCCAAG GTGTTTACTTTATGTATGATGCACTCCACGGCCCCCCCAAG < 41bp 0.564397136249533 0.854510356669571 NA NA prediction 0.580226440840074 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105207511 chr14:105207510 nonsynonymous SNV 0.590 1 20 hm7G_associated_SNPs_14892 0 0 1 0 2 ADSSL1 chr14:105207454 3'AG 105207454 Downstream 57bp 14311 chr14 105207510 105207510 1 + G T UCEC 105207511 + 105207491 105207531 41 GTGTTTACTTTATGTATGAGGCACTCCACGGCCCCCCCAAG GTGTTTACTTTATGTATGATGCACTCCACGGCCCCCCCAAG < 41bp 0.564397136249533 0.854510356669571 NA NA prediction 0.580226440840074 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105207511 chr14:105207510 nonsynonymous SNV 0.590 1 20 hm7G_associated_SNPs_14892 0 0 1 0 2 ADSSL1 chr14:105207580 5'GT 105207580 Upstream 71bp 14312 chr5 169023621 169023621 1 + G T LUSC 169023622 + 169023602 169023642 41 AAACTGAATTTGAGCAGCAGGAACGGTTGCTTGCCATGTTG AAACTGAATTTGAGCAGCATGAACGGTTGCTTGCCATGTTG < 41bp 0.538089482218653 0.828199556899959 NA NA prediction 0.58022014936261 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169023622 chr5:169023621 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14893 0 0 1 0 2 SPDL1 chr5:169023565 3'AG 169023565 Downstream 57bp 14313 chr5 169023621 169023621 1 + G T LUSC 169023622 + 169023602 169023642 41 AAACTGAATTTGAGCAGCAGGAACGGTTGCTTGCCATGTTG AAACTGAATTTGAGCAGCATGAACGGTTGCTTGCCATGTTG < 41bp 0.538089482218653 0.828199556899959 NA NA prediction 0.58022014936261 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169023622 chr5:169023621 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14893 0 0 1 0 2 SPDL1 chr5:169023705 5'GT 169023705 Upstream 85bp 14314 chr7 100609602 100609602 1 + G T STAD 100609603 + 100609583 100609623 41 AGGTGGCCGTCCACTGGAGGGCGCTGGTCGGGGGCCTGACG AGGTGGCCGTCCACTGGAGTGCGCTGGTCGGGGGCCTGACG < 41bp 0.48201319424555 0.790106054200378 NA NA prediction 0.580212108400757 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609603 chr7:100609602 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_14896 0 0 0 0 1 MUC3A chr7:100609539 3'AG 100609539 Downstream 64bp 14315 chr3 133475820 133475820 1 + G T UCEC 133475821 + 133475801 133475841 41 GAAGTATGGGCGGCAAGGAGGACTTGATCTGGGAGCTTCTC GAAGTATGGGCGGCAAGGATGACTTGATCTGGGAGCTTCTC < 41bp 0.465014394184626 0.790098706233601 NA NA prediction 0.580197412467201 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133475821 chr3:133475820 stopgain 0.998 0 20 hm7G_associated_SNPs_14898 0 0 1 0 1 TF chr3:133475853 5'GT 133475853 Upstream 34bp 14316 chr1 44435983 44435983 1 + G T LUSC 44435984 + 44435964 44436004 41 TGGATTTGTCCGCGACCTGGGGTGTGAACGAGTGAGGACAG TGGATTTGTCCGCGACCTGTGGTGTGAACGAGTGAGGACAG < 41bp 0.482366988357756 0.790086898886494 NA NA prediction 0.580173797772987 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44435984 chr1:44435983 nonsynonymous SNV 0.693 1 20 hm7G_associated_SNPs_14899 0 0 1 0 2 DPH2 chr1:44435942 3'AG 44435942 Downstream 42bp 14317 chr1 44435983 44435983 1 + G T LUSC 44435984 + 44435964 44436004 41 TGGATTTGTCCGCGACCTGGGGTGTGAACGAGTGAGGACAG TGGATTTGTCCGCGACCTGTGGTGTGAACGAGTGAGGACAG < 41bp 0.482366988357756 0.790086898886494 NA NA prediction 0.580173797772987 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44435984 chr1:44435983 nonsynonymous SNV 0.693 1 20 hm7G_associated_SNPs_14899 0 0 1 0 2 DPH2 chr1:44435994 5'GT 44435994 Upstream 12bp 14318 chr17 19318621 19318621 1 + G T COAD 19318622 + 19318602 19318642 41 CTCTCAGGATGGATGGGGAGGACAGGGCCCGGTTTCACCTC CTCTCAGGATGGATGGGGATGACAGGGCCCGGTTTCACCTC < 41bp 0.464206980379114 0.790079753045833 NA NA prediction 0.580159506091667 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19318622 chr17:19318621 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_14900 0 0 0 0 2 RNF112 chr17:19318599 3'AG 19318599 Downstream 23bp 14319 chr17 19318621 19318621 1 + G T COAD 19318622 + 19318602 19318642 41 CTCTCAGGATGGATGGGGAGGACAGGGCCCGGTTTCACCTC CTCTCAGGATGGATGGGGATGACAGGGCCCGGTTTCACCTC < 41bp 0.464206980379114 0.790079753045833 NA NA prediction 0.580159506091667 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19318622 chr17:19318621 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_14900 0 0 0 0 2 RNF112 chr17:19318652 5'GT 19318652 Upstream 32bp 14320 chr8 42852763 42852763 1 + G T LUAD 42852764 + 42852744 42852784 41 AAAATCTTTACAGGATCAAGGCTCAAAAGCAGAAGATGTAA AAAATCTTTACAGGATCAATGCTCAAAAGCAGAAGATGTAA < 41bp 0.493604061271943 0.790078782384701 NA NA prediction 0.580157564769401 Functional Gain - HOOK3 ENSG00000168172 CDS Human protein_coding chr8:42852764 chr8:42852763 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_14901 0 0 1 0 2 HOOK3 chr8:42852693 3'AG 42852693 Downstream 71bp 14321 chr8 42852763 42852763 1 + G T LUAD 42852764 + 42852744 42852784 41 AAAATCTTTACAGGATCAAGGCTCAAAAGCAGAAGATGTAA AAAATCTTTACAGGATCAATGCTCAAAAGCAGAAGATGTAA < 41bp 0.493604061271943 0.790078782384701 NA NA prediction 0.580157564769401 Functional Gain - HOOK3 ENSG00000168172 CDS Human protein_coding chr8:42852764 chr8:42852763 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_14901 0 0 1 0 2 HOOK3 chr8:42852780 5'GT 42852780 Upstream 18bp 14322 chr3 25833109 25833109 1 + G T LIHC 25833110 + 25833090 25833130 41 CATTCGATATAAACTCAAGGGCCCAAATCATGCAGTATCCA CATTCGATATAAACTCAAGTGCCCAAATCATGCAGTATCCA < 41bp 0.549498315605718 0.839558578590402 NA NA prediction 0.580120525969369 Functional Gain - OXSM ENSG00000151093 CDS Human protein_coding chr3:25833110 chr3:25833109 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14903 0 0 1 0 1 OXSM chr3:25833187 5'GT 25833187 Upstream 79bp 14323 chr3 140785597 140785597 1 + G T LUSC 140785598 + 140785578 140785618 41 CGGTGGTGAGTGCCGTGTGGGGCCACTGTGAAGTCACCATG CGGTGGTGAGTGCCGTGTGTGGCCACTGTGAAGTCACCATG < 41bp 0.476997294073003 0.79005461537058 NA NA prediction 0.580109230741159 Functional Gain - SPSB4 ENSG00000175093 CDS Human protein_coding chr3:140785598 chr3:140785597 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14904 0 0 0 0 1 SPSB4 chr3:140785640 5'GT 140785640 Upstream 44bp 14324 chrX 14627147 14627147 1 + G T SARC 14627148 + 14627128 14627168 41 TTGAGGTCAAGTTTCATCTGGAACGCCAAATGGGATATTAT TTGAGGTCAAGTTTCATCTTGAACGCCAAATGGGATATTAT < 41bp 0.527094183982635 0.817129737545465 NA NA prediction 0.580071107125659 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14627148 chrX:14627147 synonymous SNV . 0 20 hm7G_associated_SNPs_14905 0 0 0 0 1 GLRA2 chrX:14627113 3'AG 14627113 Downstream 35bp 14325 chrX 110952219 110952219 1 + G T LIHC 110952220 + 110952200 110952240 41 GCAGCCAGGTCCATCATTTGGAAATCAGGAAGGCTTGTGTC GCAGCCAGGTCCATCATTTTGAAATCAGGAAGGCTTGTGTC < 41bp 0.513399635199705 0.803415677859279 NA NA prediction 0.580032085319149 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110952220 chrX:110952219 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_14906 0 0 1 0 2 ALG13 chrX:110952193 3'AG 110952193 Downstream 27bp 14326 chrX 110952219 110952219 1 + G T LIHC 110952220 + 110952200 110952240 41 GCAGCCAGGTCCATCATTTGGAAATCAGGAAGGCTTGTGTC GCAGCCAGGTCCATCATTTTGAAATCAGGAAGGCTTGTGTC < 41bp 0.513399635199705 0.803415677859279 NA NA prediction 0.580032085319149 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110952220 chrX:110952219 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_14906 0 0 1 0 2 ALG13 chrX:110952276 5'GT 110952276 Upstream 58bp 14327 chr22 29444414 29444414 1 + G T UCEC 29444415 + 29444395 29444435 41 TGTACTCACCGGTTTCACAGGAAGTGCGTGGACCCCTGGCT TGTACTCACCGGTTTCACATGAAGTGCGTGGACCCCTGGCT < 41bp 0.460013268941642 0.790011964048247 NA NA prediction 0.580023928096493 Functional Gain - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29444415 chr22:29444414 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14907 0 0 0 0 2 ZNRF3 chr22:29444377 3'AG 29444377 Downstream 38bp 14328 chr22 29444414 29444414 1 + G T UCEC 29444415 + 29444395 29444435 41 TGTACTCACCGGTTTCACAGGAAGTGCGTGGACCCCTGGCT TGTACTCACCGGTTTCACATGAAGTGCGTGGACCCCTGGCT < 41bp 0.460013268941642 0.790011964048247 NA NA prediction 0.580023928096493 Functional Gain - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29444415 chr22:29444414 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_14907 0 0 0 0 2 ZNRF3 chr22:29444479 5'GT 29444479 Upstream 66bp 14329 chr22 24579610 24579610 1 + G T KIRC 24579611 + 24579591 24579631 41 CTCGTGCGGGCACCTGGCTGGCTGGTGAGCCCTCCTCCCTG CTCGTGCGGGCACCTGGCTTGCTGGTGAGCCCTCCTCCCTG < 41bp 0.463904946714372 0.790005874805511 NA NA prediction 0.580011749611022 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24579611 chr22:24579610 synonymous SNV . 0 20 hm7G_associated_SNPs_14908 0 0 0 0 1 SUSD2 chr22:24579614 5'GT 24579614 Upstream 5bp 14330 chr10 88428474 88428474 1 + G T STAD 88428475 + 88428455 88428495 41 TACAGTGTGACCCTGACTGGGCCCGGGCCCTGGGGCTTCCG TACAGTGTGACCCTGACTGTGCCCGGGCCCTGGGGCTTCCG < 41bp 0.459973562082068 0.789994272530574 NA NA prediction 0.579988545061148 Functional Gain - LDB3 ENSG00000122367 CDS Human protein_coding chr10:88428475 chr10:88428474 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_14911 0 0 0 0 1 LDB3 chr10:88428541 5'GT 88428541 Upstream 68bp 14331 chr4 995634 995634 1 + G T rs546933529 995635 + 995615 995655 41 CTTCTTCACTGGGGAGGCGGGCGTGCGGCTGGACTACATCT CTTCTTCACTGGGGAGGCGTGCGTGCGGCTGGACTACATCT < 41bp 0.548023019366013 0.838012490245351 NA NA prediction 0.579978941758677 Functional Gain - IDUA ENSG00000127415 CDS Human protein_coding chr4:995635 chr4:995634 nonsynonymous SNV 0.304 5 20 hm7G_associated_SNPs_14912 0 0 1 0 1 IDUA chr4:995669 5'GT 995669 Upstream 36bp 14332 chrX 46893157 46893157 1 + G T LUSC 46893158 + 46893138 46893178 41 CCAAGACAGGGACTAAATGGGCTCATGTCAGCTGTGCCCTG CCAAGACAGGGACTAAATGTGCTCATGTCAGCTGTGCCCTG < 41bp 0.548195299896364 0.838181477005478 NA NA prediction 0.579972354218228 Functional Gain - JADE3 ENSG00000102221 CDS Human protein_coding chrX:46893158 chrX:46893157 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14913 0 0 1 0 1 JADE3 chrX:46893190 5'GT 46893190 Upstream 34bp 14333 chr6 158363839 158363839 1 + G T COAD 158363840 + 158363820 158363860 41 CAGATTGCAGAAAAGCTGAGGCAGGCCCTCAGCCGCTTTCC CAGATTGCAGAAAAGCTGATGCAGGCCCTCAGCCGCTTTCC < 41bp 0.52051891065659 0.810499578879046 NA NA prediction 0.579961336444912 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158363840 chr6:158363839 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14914 0 0 1 0 1 SNX9 chr6:158363823 3'AG 158363823 Downstream 17bp 14334 chr4 71459091 71459091 1 + G T LUAD 71459092 + 71459072 71459112 41 TACTGATCCTATGCCTCCTGGAAATGAGTTTTGCAGTGCCG TACTGATCCTATGCCTCCTTGAAATGAGTTTTGCAGTGCCG < 41bp 0.536162955706817 0.826128854639473 NA NA prediction 0.579931797865312 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71459092 chr4:71459091 synonymous SNV . 0 20 hm7G_associated_SNPs_14916 0 0 0 0 2 AMBN chr4:71459044 3'AG 71459044 Downstream 48bp 14335 chr4 71459091 71459091 1 + G T LUAD 71459092 + 71459072 71459112 41 TACTGATCCTATGCCTCCTGGAAATGAGTTTTGCAGTGCCG TACTGATCCTATGCCTCCTTGAAATGAGTTTTGCAGTGCCG < 41bp 0.536162955706817 0.826128854639473 NA NA prediction 0.579931797865312 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71459092 chr4:71459091 synonymous SNV . 0 20 hm7G_associated_SNPs_14916 0 0 0 0 2 AMBN chr4:71459112 5'GT 71459112 Upstream 22bp 14336 chr9 95992016 95992016 1 + G T CESC 95992017 + 95991997 95992037 41 TGGAGCGGCAGCGGTTCAAGGAAGAGGCTGAGATGCTGAAA TGGAGCGGCAGCGGTTCAATGAAGAGGCTGAGATGCTGAAA < 41bp 0.463290822503667 0.789963721267935 NA NA prediction 0.579927442535871 Functional Gain - WNK2 ENSG00000165238 CDS Human protein_coding chr9:95992017 chr9:95992016 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14918 0 0 0 0 1 WNK2 chr9:95991978 3'AG 95991978 Downstream 39bp 14337 chr7 152513626 152513626 1 + G T COAD 152513627 + 152513607 152513647 41 GGGTGAACGTACGTTAACGGGGATAGTCATTGACAGCGGAG GGGTGAACGTACGTTAACGTGGATAGTCATTGACAGCGGAG < 41bp 0.56559117659796 0.855533104996229 NA NA prediction 0.579883856796537 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152513627 chr7:152513626 nonsynonymous SNV 0.913 3 20 hm7G_associated_SNPs_14920 0 0 1 0 2 ACTR3B chr7:152513566 3'AG 152513566 Downstream 61bp 14338 chr7 152513626 152513626 1 + G T COAD 152513627 + 152513607 152513647 41 GGGTGAACGTACGTTAACGGGGATAGTCATTGACAGCGGAG GGGTGAACGTACGTTAACGTGGATAGTCATTGACAGCGGAG < 41bp 0.56559117659796 0.855533104996229 NA NA prediction 0.579883856796537 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152513627 chr7:152513626 nonsynonymous SNV 0.913 3 20 hm7G_associated_SNPs_14920 0 0 1 0 2 ACTR3B chr7:152513673 5'GT 152513673 Upstream 48bp 14339 chr1 227077762 227077762 1 + G T OV 227077763 + 227077743 227077783 41 GGCTGTGCTGTGTCCCAAAGGGCCTCTGAGAATGCTGGTAG GGCTGTGCTGTGTCCCAAATGGCCTCTGAGAATGCTGGTAG < 41bp 0.458065512580558 0.789939690414771 NA NA prediction 0.579879380829542 Functional Gain - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227077763 chr1:227077762 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14921 0 0 1 1 2 PSEN2 chr1:227077736 3'AG 227077736 Downstream 27bp 14340 chr1 227077762 227077762 1 + G T OV 227077763 + 227077743 227077783 41 GGCTGTGCTGTGTCCCAAAGGGCCTCTGAGAATGCTGGTAG GGCTGTGCTGTGTCCCAAATGGCCTCTGAGAATGCTGGTAG < 41bp 0.458065512580558 0.789939690414771 NA NA prediction 0.579879380829542 Functional Gain - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227077763 chr1:227077762 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14921 0 0 1 1 2 PSEN2 chr1:227077834 5'GT 227077834 Upstream 73bp 14341 chr4 184606267 184606267 1 + G T LUAD 184606268 + 184606248 184606288 41 AAAGATGACCAGAAGTCTCGGATAGAAAAGAACCTCATAAA AAAGATGACCAGAAGTCTCTGATAGAAAAGAACCTCATAAA < 41bp 0.521525185762613 0.811462533261839 NA NA prediction 0.579874694998452 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184606268 chr4:184606267 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_14922 0 0 1 0 2 TRAPPC11 chr4:184606237 3'AG 184606237 Downstream 31bp 14342 chr4 184606267 184606267 1 + G T LUAD 184606268 + 184606248 184606288 41 AAAGATGACCAGAAGTCTCGGATAGAAAAGAACCTCATAAA AAAGATGACCAGAAGTCTCTGATAGAAAAGAACCTCATAAA < 41bp 0.521525185762613 0.811462533261839 NA NA prediction 0.579874694998452 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184606268 chr4:184606267 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_14922 0 0 1 0 2 TRAPPC11 chr4:184606298 5'GT 184606298 Upstream 32bp 14343 chr2 28521329 28521329 1 + G T LUAD 28521330 + 28521310 28521350 41 ATCCGTACAGCCCCAGATGGGATGGAAATGAAATGGCCAAA ATCCGTACAGCCCCAGATGTGATGGAAATGAAATGGCCAAA < 41bp 0.507599771722692 0.797533668483638 NA NA prediction 0.579867793521892 Functional Gain - BABAM2 ENSG00000158019 CDS Human protein_coding chr2:28521330 chr2:28521329 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14923 0 0 1 1 1 BABAM2 chr2:28521358 5'GT 28521358 Upstream 30bp 14344 chrX 152959803 152959803 1 + G T LUSC 152959804 + 152959784 152959824 41 GGCTCTGTCCCCCAGGGCGGGATGTACGTCTTCCAGCTGTT GGCTCTGTCCCCCAGGGCGTGATGTACGTCTTCCAGCTGTT < 41bp 0.461059002655301 0.789931995095691 NA NA prediction 0.579863990191383 Functional Gain - SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959804 chrX:152959803 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_14924 0 0 1 1 2 SLC6A8 chrX:152959799 3'AG 152959799 Downstream 5bp 14345 chrX 152959803 152959803 1 + G T LUSC 152959804 + 152959784 152959824 41 GGCTCTGTCCCCCAGGGCGGGATGTACGTCTTCCAGCTGTT GGCTCTGTCCCCCAGGGCGTGATGTACGTCTTCCAGCTGTT < 41bp 0.461059002655301 0.789931995095691 NA NA prediction 0.579863990191383 Functional Gain - SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152959804 chrX:152959803 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_14924 0 0 1 1 2 SLC6A8 chrX:152959901 5'GT 152959901 Upstream 99bp 14346 chr4 147096888 147096888 1 + G T rs571469505 147096889 + 147096869 147096909 41 CCCCTGCCTCGGCGCTTTCGGTTTTGGCTGGGATCATCCGC CCCCTGCCTCGGCGCTTTCTGTTTTGGCTGGGATCATCCGC < 41bp 0.507667387464171 0.79759253843986 NA NA prediction 0.579850301951378 Functional Gain - LSM6 ENSG00000164167 UTR5 Human protein_coding chr4:147096889 chr4:147096888 . . 0 20 hm7G_associated_SNPs_14927 0 0 1 0 1 LSM6 chr4:147096963 5'GT 147096963 Upstream 76bp 14347 chr20 62848497 62848497 1 + G T SARC 62848498 + 62848478 62848518 41 GTGGCCCCCGCCACACCCAGGGCCAACTTGGCCAAGGAGCT GTGGCCCCCGCCACACCCATGGCCAACTTGGCCAAGGAGCT < 41bp 0.451341153913388 0.789919163950486 NA NA prediction 0.579838327900972 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62848498 chr20:62848497 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_14928 0 0 0 0 1 MYT1 chr20:62848420 3'AG 62848420 Downstream 78bp 14348 chr20 62836946 62836946 1 + G T COAD 62836947 + 62836927 62836967 41 CAAGAAGAGGAAGCTGGAGGGCGCTGAGGCTGAGCACCTGG CAAGAAGAGGAAGCTGGAGTGCGCTGAGGCTGAGCACCTGG < 41bp 0.45947695326291 0.78990939833012 NA NA prediction 0.579818796660241 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62836947 chr20:62836946 nonsynonymous SNV 0.854 3 20 hm7G_associated_SNPs_14929 0 0 0 0 1 MYT1 chr20:62836906 3'AG 62836906 Downstream 41bp 14349 chr1 64117397 64117397 1 + G T COAD 64117398 + 64117378 64117418 41 AAATGATGAAGGACTTGGAGGCCCTGATGTTTGATCGCTCC AAATGATGAAGGACTTGGATGCCCTGATGTTTGATCGCTCC < 41bp 0.555345263268436 0.845244719107215 NA NA prediction 0.579798911677558 Functional Gain - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64117398 chr1:64117397 nonsynonymous SNV 0.927 1 20 hm7G_associated_SNPs_14930 0 0 1 0 1 PGM1 chr1:64117340 3'AG 64117340 Downstream 58bp 14350 chr17 65021095 65021095 1 + G T LUAD 65021096 + 65021076 65021116 41 CAACATCGTCCTCAGTGCCGGCATCCTCTTCGTGGCTGCAG CAACATCGTCCTCAGTGCCTGCATCCTCTTCGTGGCTGCAG < 41bp 0.55493480661132 0.8448290716755 NA NA prediction 0.57978853012836 Functional Gain - CACNG4 ENSG00000075461 CDS Human protein_coding chr17:65021096 chr17:65021095 nonsynonymous SNV 0.856 5 20 hm7G_associated_SNPs_14931 0 0 0 0 1 CACNG4 chr17:65021116 5'GT 65021116 Upstream 22bp 14351 chr14 100402386 100402386 1 + G T STAD 100402387 + 100402367 100402407 41 TGGGAATTTCTTAGCCATAGGCTCACATGACAACTGCATCT TGGGAATTTCTTAGCCATATGCTCACATGACAACTGCATCT < 41bp 0.47980962909144 0.789876820903374 NA NA prediction 0.579753641806748 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100402387 chr14:100402386 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_14932 0 0 1 0 2 EML1 chr14:100402366 3'AG 100402366 Downstream 21bp 14352 chr14 100402386 100402386 1 + G T STAD 100402387 + 100402367 100402407 41 TGGGAATTTCTTAGCCATAGGCTCACATGACAACTGCATCT TGGGAATTTCTTAGCCATATGCTCACATGACAACTGCATCT < 41bp 0.47980962909144 0.789876820903374 NA NA prediction 0.579753641806748 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100402387 chr14:100402386 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_14932 0 0 1 0 2 EML1 chr14:100402463 5'GT 100402463 Upstream 78bp 14353 chrX 65412096 65412096 1 + G T LUSC 65412097 + 65412077 65412117 41 AATGGGACTATGGCCCGATGGGGCATGATGGGAGTACTGGG AATGGGACTATGGCCCGATTGGGCATGATGGGAGTACTGGG < 41bp 0.556868396291698 0.846736767045944 NA NA prediction 0.579736741508491 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65412097 chrX:65412096 nonsynonymous SNV 0.947 1 20 hm7G_associated_SNPs_14933 0 0 1 0 1 HEPH chrX:65412140 5'GT 65412140 Upstream 45bp 14354 chr4 17816575 17816575 1 + G T BLCA 17816576 + 17816556 17816596 41 ACTTTGCCAAAAATTGTAGGGCGCACCAAGGATGTGAAAGA ACTTTGCCAAAAATTGTAGTGCGCACCAAGGATGTGAAAGA < 41bp 0.535432850418857 0.825295283968933 NA NA prediction 0.579724867100153 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17816576 chr4:17816575 nonsynonymous SNV 0.963 2 20 hm7G_associated_SNPs_14935 0 0 1 0 2 NCAPG chr4:17816476 3'AG 17816476 Downstream 100bp 14355 chr4 17816575 17816575 1 + G T BLCA 17816576 + 17816556 17816596 41 ACTTTGCCAAAAATTGTAGGGCGCACCAAGGATGTGAAAGA ACTTTGCCAAAAATTGTAGTGCGCACCAAGGATGTGAAAGA < 41bp 0.535432850418857 0.825295283968933 NA NA prediction 0.579724867100153 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17816576 chr4:17816575 nonsynonymous SNV 0.963 2 20 hm7G_associated_SNPs_14935 0 0 1 0 2 NCAPG chr4:17816621 5'GT 17816621 Upstream 47bp 14356 chr14 102802097 102802097 1 + G T UCEC 102802098 + 102802078 102802118 41 TTGAAGAGTTGCATAAAATGGTTAAGAAAATGTGCCAAGAT TTGAAGAGTTGCATAAAATTGTTAAGAAAATGTGCCAAGAT < 41bp 0.523086830094 0.81294588444729 NA NA prediction 0.579718108706579 Functional Gain - ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102802098 chr14:102802097 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_14936 0 0 1 2 2 ZNF839 chr14:102802026 3'AG 102802026 Downstream 72bp 14357 chr14 102802097 102802097 1 + G T UCEC 102802098 + 102802078 102802118 41 TTGAAGAGTTGCATAAAATGGTTAAGAAAATGTGCCAAGAT TTGAAGAGTTGCATAAAATTGTTAAGAAAATGTGCCAAGAT < 41bp 0.523086830094 0.81294588444729 NA NA prediction 0.579718108706579 Functional Gain - ZNF839 ENSG00000022976 CDS Human protein_coding chr14:102802098 chr14:102802097 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_14936 0 0 1 2 2 ZNF839 chr14:102802175 5'GT 102802175 Upstream 79bp 14358 chr1 203029425 203029425 1 + G T COAD 203029426 + 203029406 203029446 41 CCATCATGTCCGCTCTGTCGGACACAGAGATCCAGCGGGAG CCATCATGTCCGCTCTGTCTGACACAGAGATCCAGCGGGAG < 41bp 0.554338210371859 0.844197078576879 NA NA prediction 0.579717736410041 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203029426 chr1:203029425 synonymous SNV . 0 20 hm7G_associated_SNPs_14937 0 0 1 0 1 PPFIA4 chr1:203029345 3'AG 203029345 Downstream 81bp 14359 chr8 124988267 124988267 1 + G T rs11991668 124988268 + 124988248 124988288 41 ACGTCACCAAGGCATTTGTGGGTGACAGTAAGGACCTGGTG ACGTCACCAAGGCATTTGTTGGTGACAGTAAGGACCTGGTG < 41bp 0.468894777539215 0.789836231049517 NA NA prediction 0.579672462099035 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:124988268 chr8:124988267 synonymous SNV . 0 20 hm7G_associated_SNPs_14938 0 0 0 0 1 FER1L6 chr8:124988324 5'GT 124988324 Upstream 58bp 14360 chr7 156979626 156979626 1 + G T BLCA 156979627 + 156979607 156979647 41 TGCTCAACCTGGTGTGGAGGGACTCTGCGAGCGAGGAGGTC TGCTCAACCTGGTGTGGAGTGACTCTGCGAGCGAGGAGGTC < 41bp 0.482692746014675 0.7898178345513 NA NA prediction 0.579635669102599 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:156979627 chr7:156979626 nonsynonymous SNV 0.943 3 20 hm7G_associated_SNPs_14939 0 0 1 0 1 UBE3C chr7:156979528 3'AG 156979528 Downstream 99bp 14361 chr7 55240798 55240798 1 + G T UCEC 55240799 + 55240779 55240819 41 CGGAAGCGCACGCTGCGGAGGCTGCTGCAGGAGAGGGAGGT CGGAAGCGCACGCTGCGGATGCTGCTGCAGGAGAGGGAGGT < 41bp 0.472073542620722 0.789817808920988 NA NA prediction 0.579635617841977 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55240799 chr7:55240798 nonsynonymous SNV 0.175 4 20 hm7G_associated_SNPs_14940 0 0 1 0 1 EGFR chr7:55240817 5'GT 55240817 Upstream 20bp 14362 chr1 45190265 45190265 1 + G T COAD 45190266 + 45190246 45190286 41 AGCTGCTGTACCTGCGCGTGGTGCGTGGCCTAATGGCCGCC AGCTGCTGTACCTGCGCGTTGTGCGTGGCCTAATGGCCGCC < 41bp 0.552000463322499 0.841814462363898 NA NA prediction 0.579627998082797 Functional Gain - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45190266 chr1:45190265 synonymous SNV . 0 20 hm7G_associated_SNPs_14941 0 0 0 0 1 C1orf228 chr1:45190340 5'GT 45190340 Upstream 76bp 14363 chr12 3692226 3692226 1 + G T LIHC 3692227 + 3692207 3692247 41 TCTTCTCTGGGCTGCAGGAGGTGGACATTTACACAGTGAAG TCTTCTCTGGGCTGCAGGATGTGGACATTTACACAGTGAAG < 41bp 0.489451456100242 0.789789621934642 NA NA prediction 0.579579243869284 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3692227 chr12:3692226 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14943 0 0 0 0 1 PRMT8 chr12:3692224 3'AG 3692224 Downstream 3bp 14364 chr4 84516068 84516068 1 + G T LUAD 84516069 + 84516049 84516089 41 AAGGCTTGTCCTCATGTCTGGTTTGAACGCTCAGAAATGAA AAGGCTTGTCCTCATGTCTTGTTTGAACGCTCAGAAATGAA < 41bp 0.533509276270511 0.823297707176855 NA NA prediction 0.579576861812686 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84516069 chr4:84516068 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14944 0 0 1 0 2 GPAT3 chr4:84515998 3'AG 84515998 Downstream 71bp 14365 chr4 84516068 84516068 1 + G T LUAD 84516069 + 84516049 84516089 41 AAGGCTTGTCCTCATGTCTGGTTTGAACGCTCAGAAATGAA AAGGCTTGTCCTCATGTCTTGTTTGAACGCTCAGAAATGAA < 41bp 0.533509276270511 0.823297707176855 NA NA prediction 0.579576861812686 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84516069 chr4:84516068 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14944 0 0 1 0 2 GPAT3 chr4:84516113 5'GT 84516113 Upstream 46bp 14366 chr12 58016597 58016597 1 + G T THCA 58016598 + 58016578 58016618 41 AACCCCTCCTCCCCAACCTGGCTGAGCTGCCCAGGATTCTG AACCCCTCCTCCCCAACCTTGCTGAGCTGCCCAGGATTCTG < 41bp 0.448963197847088 0.789785638308 NA NA prediction 0.579571276616001 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58016598 chr12:58016597 synonymous SNV . 0 20 hm7G_associated_SNPs_14946 0 0 0 0 1 SLC26A10 chr12:58016570 3'AG 58016570 Downstream 28bp 14367 chr1 172569239 172569239 1 + G T SARC 172569240 + 172569220 172569260 41 AAGCCATCCAGTTGCTACAGGCACAGCTGACCAACATGACA AAGCCATCCAGTTGCTACATGCACAGCTGACCAACATGACA < 41bp 0.477539316362726 0.789777571859808 NA NA prediction 0.579555143719617 Functional Gain - SUCO ENSG00000094975 CDS Human protein_coding chr1:172569240 chr1:172569239 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14947 0 0 1 0 2 SUCO chr1:172569204 3'AG 172569204 Downstream 36bp 14368 chr1 172569239 172569239 1 + G T SARC 172569240 + 172569220 172569260 41 AAGCCATCCAGTTGCTACAGGCACAGCTGACCAACATGACA AAGCCATCCAGTTGCTACATGCACAGCTGACCAACATGACA < 41bp 0.477539316362726 0.789777571859808 NA NA prediction 0.579555143719617 Functional Gain - SUCO ENSG00000094975 CDS Human protein_coding chr1:172569240 chr1:172569239 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14947 0 0 1 0 2 SUCO chr1:172569308 5'GT 172569308 Upstream 70bp 14369 chr4 113303649 113303649 1 + G T UCEC 113303650 + 113303630 113303670 41 GCAGTACAAACAAGCCGTGGGCCCAGAGGACAAAACAAACC GCAGTACAAACAAGCCGTGTGCCCAGAGGACAAAACAAACC < 41bp 0.482193732353629 0.78977087537811 NA NA prediction 0.57954175075622 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113303650 chr4:113303649 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_14949 0 0 0 2 1 ALPK1 chr4:113303708 5'GT 113303708 Upstream 60bp 14370 chr15 34646858 34646858 1 + G T UCEC 34646859 + 34646839 34646879 41 AAGGGCAGCAGCAGGAGGAGGAAGGGATGTATCCAGATCCA AAGGGCAGCAGCAGGAGGATGAAGGGATGTATCCAGATCCA < 41bp 0.549961457312577 0.839726552798078 NA NA prediction 0.579530190971 Functional Gain - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34646859 chr15:34646858 nonsynonymous SNV 0.937 0 20 hm7G_associated_SNPs_14951 0 0 0 0 1 NUTM1 chr15:34646933 5'GT 34646933 Upstream 76bp 14371 chr17 55193495 55193495 1 + G T UCEC 55193496 + 55193476 55193516 41 GGTCATCTGTGCCGCCCCTGGTGCGGACGGGGCCTGGTGGC GGTCATCTGTGCCGCCCCTTGTGCGGACGGGGCCTGGTGGC < 41bp 0.555623554673665 0.845385735258845 NA NA prediction 0.57952436117036 Functional Gain - AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55193496 chr17:55193495 nonsynonymous SNV 0.376 4 20 hm7G_associated_SNPs_14952 0 0 1 0 1 AKAP1 chr17:55193472 3'AG 55193472 Downstream 24bp 14372 chr12 107141268 107141268 1 + G T BRCA 107141269 + 107141249 107141289 41 CACAGTGACGACGGCTGCTGGGTCCCCAGCTGAGAACTCCC CACAGTGACGACGGCTGCTTGGTCCCCAGCTGAGAACTCCC < 41bp 0.56074647560502 0.850507650544602 NA NA prediction 0.579522349879164 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107141269 chr12:107141268 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14953 0 0 0 0 1 RFX4 chr12:107141215 3'AG 107141215 Downstream 54bp 14373 chrX 103431193 103431193 1 + G T LUAD 103431194 + 103431174 103431214 41 AGTACTGAGATGGGTCTTCGGGAGCAACTTGATATTATTAA AGTACTGAGATGGGTCTTCTGGAGCAACTTGATATTATTAA < 41bp 0.488924363792975 0.789751677668927 NA NA prediction 0.579503355337854 Functional Gain - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103431194 chrX:103431193 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14954 0 0 1 0 1 FAM199X chrX:103431141 3'AG 103431141 Downstream 53bp 14374 chr22 51044278 51044278 1 + G T COAD 51044279 + 51044259 51044299 41 AGCGGAGCCCCTGCTGGGTGGAGCGCTTTGACGTGCAGTTC AGCGGAGCCCCTGCTGGGTTGAGCGCTTTGACGTGCAGTTC < 41bp 0.460779270661757 0.789714909968043 NA NA prediction 0.579429819936086 Functional Gain - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044279 chr22:51044278 synonymous SNV . 0 20 hm7G_associated_SNPs_14957 0 0 0 0 2 MAPK8IP2 chr22:51044253 3'AG 51044253 Downstream 26bp 14375 chr22 51044278 51044278 1 + G T COAD 51044279 + 51044259 51044299 41 AGCGGAGCCCCTGCTGGGTGGAGCGCTTTGACGTGCAGTTC AGCGGAGCCCCTGCTGGGTTGAGCGCTTTGACGTGCAGTTC < 41bp 0.460779270661757 0.789714909968043 NA NA prediction 0.579429819936086 Functional Gain - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044279 chr22:51044278 synonymous SNV . 0 20 hm7G_associated_SNPs_14957 0 0 0 0 2 MAPK8IP2 chr22:51044362 5'GT 51044362 Upstream 85bp 14376 chr17 21204212 21204212 1 + G T UCEC 21204213 + 21204193 21204233 41 GGGCCACCGTGAACTCACAGGAGCAGAAGCGGCTGCTCATG GGGCCACCGTGAACTCACATGAGCAGAAGCGGCTGCTCATG < 41bp 0.452692420326353 0.789702894487503 NA NA prediction 0.579405788975005 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21204213 chr17:21204212 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14960 0 0 1 0 2 MAP2K3 chr17:21204186 3'AG 21204186 Downstream 27bp 14377 chr17 21204212 21204212 1 + G T UCEC 21204213 + 21204193 21204233 41 GGGCCACCGTGAACTCACAGGAGCAGAAGCGGCTGCTCATG GGGCCACCGTGAACTCACATGAGCAGAAGCGGCTGCTCATG < 41bp 0.452692420326353 0.789702894487503 NA NA prediction 0.579405788975005 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21204213 chr17:21204212 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14960 0 0 1 0 2 MAP2K3 chr17:21204305 5'GT 21204305 Upstream 94bp 14378 chr11 126145236 126145236 1 + G T LGG 126145237 + 126145217 126145257 41 CACAGGGATGGAGGACGAAGGTTGGTTTGACCCCTGGTGTC CACAGGGATGGAGGACGAATGTTGGTTTGACCCCTGGTGTC < 41bp 0.478340939123394 0.789698191398364 NA NA prediction 0.579396382796727 Functional Gain - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126145237 chr11:126145236 nonsynonymous SNV 0.986 5 20 hm7G_associated_SNPs_14963 0 0 1 0 2 FOXRED1 chr11:126145222 3'AG 126145222 Downstream 15bp 14379 chr11 126145236 126145236 1 + G T LGG 126145237 + 126145217 126145257 41 CACAGGGATGGAGGACGAAGGTTGGTTTGACCCCTGGTGTC CACAGGGATGGAGGACGAATGTTGGTTTGACCCCTGGTGTC < 41bp 0.478340939123394 0.789698191398364 NA NA prediction 0.579396382796727 Functional Gain - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126145237 chr11:126145236 nonsynonymous SNV 0.986 5 20 hm7G_associated_SNPs_14963 0 0 1 0 2 FOXRED1 chr11:126145323 5'GT 126145323 Upstream 88bp 14380 chr9 37732384 37732384 1 + G T LUAD 37732385 + 37732365 37732405 41 TCGCGGCTCTGCACATCCAGGAACGGATCTACGCCTGTGCC TCGCGGCTCTGCACATCCATGAACGGATCTACGCCTGTGCC < 41bp 0.463881134424792 0.789694976517504 NA NA prediction 0.579389953035008 Functional Gain - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37732385 chr9:37732384 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_14964 0 0 0 0 1 FRMPD1 chr9:37732301 3'AG 37732301 Downstream 84bp 14381 chr1 44163605 44163605 1 + G T PAAD 44163606 + 44163586 44163626 41 TACCAGTGTGAAGTGGTCAGGCTCACCACCGAGACCTTCTA TACCAGTGTGAAGTGGTCATGCTCACCACCGAGACCTTCTA < 41bp 0.539529048046394 0.829212275282821 NA NA prediction 0.579366454472854 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44163606 chr1:44163605 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_14965 0 0 1 0 1 KDM4A chr1:44163684 5'GT 44163684 Upstream 80bp 14382 chrX 77254174 77254174 1 + G T LUAD 77254175 + 77254155 77254195 41 TTGAACGGAATTTAAGGCGGGAAGAAGGTGAGACACTCTTG TTGAACGGAATTTAAGGCGTGAAGAAGGTGAGACACTCTTG < 41bp 0.491165201027098 0.78967506429914 NA NA prediction 0.579350128598279 Functional Gain - ATP7A ENSG00000165240 CDS Human protein_coding chrX:77254175 chrX:77254174 synonymous SNV . 0 20 hm7G_associated_SNPs_14966 0 0 0 0 1 ATP7A chrX:77254181 5'GT 77254181 Upstream 8bp 14383 chr14 100792493 100792493 1 + G T LUSC 100792494 + 100792474 100792514 41 GAAGCCCACTTCTCCTGCAGGTCAGGATCCAGACGGAGCCA GAAGCCCACTTCTCCTGCATGTCAGGATCCAGACGGAGCCA < 41bp 0.505347459008427 0.795013167050643 NA NA prediction 0.579331416084433 Functional Gain - SLC25A47 ENSG00000140107 splicing Human protein_coding chr14:100792494 chr14:100792493 . 0.106 0 20 hm7G_associated_SNPs_14969 0 0 0 0 2 SLC25A47 chr14:100792433 3'AG 100792433 Downstream 61bp 14384 chr14 100792493 100792493 1 + G T LUSC 100792494 + 100792474 100792514 41 GAAGCCCACTTCTCCTGCAGGTCAGGATCCAGACGGAGCCA GAAGCCCACTTCTCCTGCATGTCAGGATCCAGACGGAGCCA < 41bp 0.505347459008427 0.795013167050643 NA NA prediction 0.579331416084433 Functional Gain - SLC25A47 ENSG00000140107 splicing Human protein_coding chr14:100792494 chr14:100792493 . 0.106 0 20 hm7G_associated_SNPs_14969 0 0 0 0 2 SLC25A47 chr14:100792565 5'GT 100792565 Upstream 73bp 14385 chr10 287997 287997 1 + G T UCEC 287998 + 287978 288018 41 GGTTTGGGCTAAAATGAAAGGTTTTGGGTTTTGGCCAGCCA GGTTTGGGCTAAAATGAAATGTTTTGGGTTTTGGCCAGCCA < 41bp 0.525888302482635 0.815529001962871 NA NA prediction 0.579281398960472 Functional Gain - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:287998 chr10:287997 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14971 0 0 0 0 2 ZMYND11 chr10:287961 3'AG 287961 Downstream 37bp 14386 chr10 287997 287997 1 + G T UCEC 287998 + 287978 288018 41 GGTTTGGGCTAAAATGAAAGGTTTTGGGTTTTGGCCAGCCA GGTTTGGGCTAAAATGAAATGTTTTGGGTTTTGGCCAGCCA < 41bp 0.525888302482635 0.815529001962871 NA NA prediction 0.579281398960472 Functional Gain - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:287998 chr10:287997 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_14971 0 0 0 0 2 ZMYND11 chr10:288079 5'GT 288079 Upstream 83bp 14387 chr19 50957608 50957608 1 + G T LUSC 50957609 + 50957589 50957629 41 GGAGCCACCAATGTACGATGGGGGGAAGCCAGTCACCGGTG GGAGCCACCAATGTACGATTGGGGGAAGCCAGTCACCGGTG < 41bp 0.557457132887536 0.84709297840745 NA NA prediction 0.579271691039828 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957609 chr19:50957608 nonsynonymous SNV 0.379 3 20 hm7G_associated_SNPs_14972 0 0 0 0 2 MYBPC2 chr19:50957522 3'AG 50957522 Downstream 87bp 14388 chr19 50957608 50957608 1 + G T LUSC 50957609 + 50957589 50957629 41 GGAGCCACCAATGTACGATGGGGGGAAGCCAGTCACCGGTG GGAGCCACCAATGTACGATTGGGGGAAGCCAGTCACCGGTG < 41bp 0.557457132887536 0.84709297840745 NA NA prediction 0.579271691039828 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957609 chr19:50957608 nonsynonymous SNV 0.379 3 20 hm7G_associated_SNPs_14972 0 0 0 0 2 MYBPC2 chr19:50957626 5'GT 50957626 Upstream 19bp 14389 chr18 29055707 29055707 1 + G T LUAD 29055708 + 29055688 29055728 41 ATGCCACTGGTTCTCCTGTGGGCTCCGTGGGTTGTTGCAGT ATGCCACTGGTTCTCCTGTTGGCTCCGTGGGTTGTTGCAGT < 41bp 0.517555013670435 0.807171467188377 NA NA prediction 0.579232907035884 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29055708 chr18:29055707 synonymous SNV . 0 20 hm7G_associated_SNPs_14973 0 0 0 0 1 DSG3 chr18:29055609 3'AG 29055609 Downstream 99bp 14390 chr10 115489134 115489134 1 + G T rs545011125 115489135 + 115489115 115489155 41 AAGCCCTCTGCTCCATCCTGGAGGAGCACGGAAAAGACCTG AAGCCCTCTGCTCCATCCTTGAGGAGCACGGAAAAGACCTG < 41bp 0.486224761305744 0.7896142912031 NA NA prediction 0.579228582406201 Functional Gain - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115489135 chr10:115489134 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_14974 0 0 0 0 1 CASP7 chr10:115489070 3'AG 115489070 Downstream 65bp 14391 chr22 24125618 24125618 1 + G T KIRP 24125619 + 24125599 24125639 41 CTATGCCTACTTCCTGCGCGGCCGCCTCTACTGGAAGTTTG CTATGCCTACTTCCTGCGCTGCCGCCTCTACTGGAAGTTTG < 41bp 0.535153785357811 0.82475965593317 NA NA prediction 0.579211741150718 Functional Gain - MMP11 ENSG00000099953;ENSG00000267954 CDS Human other chr22:24125619 chr22:24125618 nonsynonymous SNV 0.924 4 20 hm7G_associated_SNPs_14975 0 0 0 0 1 MMP11 chr22:24125598 3'AG 24125598 Downstream 21bp 14392 chr7 156752576 156752576 1 + G T LUAD 156752577 + 156752557 156752597 41 TTTCTGGAGGCAGTGGTGAGGAAGTTCGATGCCATCTATAA TTTCTGGAGGCAGTGGTGATGAAGTTCGATGCCATCTATAA < 41bp 0.477462973368483 0.78959622578573 NA NA prediction 0.579192451571461 Functional Gain - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156752577 chr7:156752576 nonsynonymous SNV 0.689 4 20 hm7G_associated_SNPs_14977 0 0 1 0 1 NOM1 chr7:156752545 3'AG 156752545 Downstream 32bp 14393 chr2 233404465 233404465 1 + G T STAD 233404466 + 233404446 233404486 41 AGCTGAGGCACCATGCATGGGGGCCAGGGGCCGCTGCTCCT AGCTGAGGCACCATGCATGTGGGCCAGGGGCCGCTGCTCCT < 41bp 0.528876793646647 0.818458112858133 NA NA prediction 0.579162638422974 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233404466 chr2:233404465 nonsynonymous SNV 0.026 1 20 hm7G_associated_SNPs_14978 0 0 0 0 1 CHRNG chr2:233404512 5'GT 233404512 Upstream 48bp 14394 chr4 166226778 166226778 1 + G T LUAD 166226779 + 166226759 166226799 41 GTTGATGGTGGTGGTTGGGGGCCAAGCACCAAAGGCTATCC GTTGATGGTGGTGGTTGGGTGCCAAGCACCAAAGGCTATCC < 41bp 0.543075018100632 0.83264802756151 NA NA prediction 0.579146018921755 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166226779 chr4:166226778 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14980 0 0 1 0 2 KLHL2 chr4:166226760 3'AG 166226760 Downstream 19bp 14395 chr4 166226778 166226778 1 + G T LUAD 166226779 + 166226759 166226799 41 GTTGATGGTGGTGGTTGGGGGCCAAGCACCAAAGGCTATCC GTTGATGGTGGTGGTTGGGTGCCAAGCACCAAAGGCTATCC < 41bp 0.543075018100632 0.83264802756151 NA NA prediction 0.579146018921755 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166226779 chr4:166226778 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_14980 0 0 1 0 2 KLHL2 chr4:166226877 5'GT 166226877 Upstream 100bp 14396 chr11 32861770 32861770 1 + G T UCEC 32861771 + 32861751 32861791 41 TGTATCACTAAGTGTAATAGGCTACAACATCCATGGTAAGT TGTATCACTAAGTGTAATATGCTACAACATCCATGGTAAGT < 41bp 0.500752066840988 0.790315005897142 NA NA prediction 0.579125878112309 Functional Gain - PRRG4 ENSG00000135378 CDS Human protein_coding chr11:32861771 chr11:32861770 nonsynonymous SNV 0.090 2 20 hm7G_associated_SNPs_14982 0 0 0 0 1 PRRG4 chr11:32861785 5'GT 32861785 Upstream 16bp 14397 chr11 1974067 1974067 1 + G T PAAD 1974068 + 1974048 1974088 41 TCAAGAAGCCGGACTACAAGGTCGCCTACGTGCAGCTGGTG TCAAGAAGCCGGACTACAATGTCGCCTACGTGCAGCTGGTG < 41bp 0.550389678216439 0.839926880521438 NA NA prediction 0.579074404609998 Functional Gain - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1974068 chr11:1974067 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_14983 0 0 1 0 2 MRPL23 chr11:1974012 3'AG 1974012 Downstream 56bp 14398 chr11 1974067 1974067 1 + G T PAAD 1974068 + 1974048 1974088 41 TCAAGAAGCCGGACTACAAGGTCGCCTACGTGCAGCTGGTG TCAAGAAGCCGGACTACAATGTCGCCTACGTGCAGCTGGTG < 41bp 0.550389678216439 0.839926880521438 NA NA prediction 0.579074404609998 Functional Gain - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1974068 chr11:1974067 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_14983 0 0 1 0 2 MRPL23 chr11:1974085 5'GT 1974085 Upstream 19bp 14399 chrX 133527567 133527567 1 + G T THCA 133527568 + 133527548 133527588 41 TTGTCCTGGAGCAACAATTGGTTGTGATGTGAAAACATGTC TTGTCCTGGAGCAACAATTTGTTGTGATGTGAAAACATGTC < 41bp 0.517787331014311 0.807301543969195 NA NA prediction 0.579028425909769 Functional Gain - PHF6 ENSG00000156531 CDS Human protein_coding chrX:133527568 chrX:133527567 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14984 0 0 1 0 2 PHF6 chrX:133527531 3'AG 133527531 Downstream 37bp 14400 chrX 133527567 133527567 1 + G T THCA 133527568 + 133527548 133527588 41 TTGTCCTGGAGCAACAATTGGTTGTGATGTGAAAACATGTC TTGTCCTGGAGCAACAATTTGTTGTGATGTGAAAACATGTC < 41bp 0.517787331014311 0.807301543969195 NA NA prediction 0.579028425909769 Functional Gain - PHF6 ENSG00000156531 CDS Human protein_coding chrX:133527568 chrX:133527567 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14984 0 0 1 0 2 PHF6 chrX:133527664 5'GT 133527664 Upstream 98bp 14401 chr9 101782703 101782703 1 + G T UCEC 101782704 + 101782684 101782724 41 ATGTGGGAATGAAAGGACAGGCTGGGCCCAAAGGAGAAAAG ATGTGGGAATGAAAGGACATGCTGGGCCCAAAGGAGAAAAG < 41bp 0.539579210164617 0.829089508001284 NA NA prediction 0.579020595673334 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101782704 chr9:101782703 nonsynonymous SNV 0.865 2 20 hm7G_associated_SNPs_14985 0 0 0 0 2 COL15A1 chr9:101782671 3'AG 101782671 Downstream 33bp 14402 chr9 101782703 101782703 1 + G T UCEC 101782704 + 101782684 101782724 41 ATGTGGGAATGAAAGGACAGGCTGGGCCCAAAGGAGAAAAG ATGTGGGAATGAAAGGACATGCTGGGCCCAAAGGAGAAAAG < 41bp 0.539579210164617 0.829089508001284 NA NA prediction 0.579020595673334 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101782704 chr9:101782703 nonsynonymous SNV 0.865 2 20 hm7G_associated_SNPs_14985 0 0 0 0 2 COL15A1 chr9:101782724 5'GT 101782724 Upstream 22bp 14403 chr11 22363306 22363306 1 + G T LUAD 22363307 + 22363287 22363327 41 CAACAGCACCATCCACCGCGGGGGCAAGGTCATCAAGGAGG CAACAGCACCATCCACCGCTGGGGCAAGGTCATCAAGGAGG < 41bp 0.531476340874009 0.820986482592131 NA NA prediction 0.579020283436245 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363307 chr11:22363306 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_14986 0 0 0 0 1 SLC17A6 chr11:22363326 5'GT 22363326 Upstream 21bp 14404 chr2 96933434 96933434 1 + G T LUSC 96933435 + 96933415 96933455 41 CCCCATCTGGCAACCTCCTGGCCACTTGCAGCCGAGATAAG CCCCATCTGGCAACCTCCTTGCCACTTGCAGCCGAGATAAG < 41bp 0.561084511575747 0.850588242082243 NA NA prediction 0.579007461012991 Functional Gain - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933435 chr2:96933434 synonymous SNV . 0 20 hm7G_associated_SNPs_14987 0 0 1 0 1 CIAO1 chr2:96933474 5'GT 96933474 Upstream 41bp 14405 chr2 119735447 119735447 1 + G T LUSC 119735448 + 119735428 119735468 41 AGGGCAGCAAAGGCGATGGGGGTCTCATTGGCCCAAAAGGG AGGGCAGCAAAGGCGATGGTGGTCTCATTGGCCCAAAAGGG < 41bp 0.451860823687097 0.78948137381657 NA NA prediction 0.578962747633141 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735448 chr2:119735447 synonymous SNV . 0 20 hm7G_associated_SNPs_14990 0 0 0 0 2 MARCO chr2:119735404 3'AG 119735404 Downstream 44bp 14406 chr2 119735447 119735447 1 + G T LUSC 119735448 + 119735428 119735468 41 AGGGCAGCAAAGGCGATGGGGGTCTCATTGGCCCAAAAGGG AGGGCAGCAAAGGCGATGGTGGTCTCATTGGCCCAAAAGGG < 41bp 0.451860823687097 0.78948137381657 NA NA prediction 0.578962747633141 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735448 chr2:119735447 synonymous SNV . 0 20 hm7G_associated_SNPs_14990 0 0 0 0 2 MARCO chr2:119735511 5'GT 119735511 Upstream 65bp 14407 chr6 130378624 130378624 1 + G T LUAD 130378625 + 130378605 130378645 41 AGAAAGCGGTGGCAGTGCCGGCGAAGCTGTTCAAGGAGGTA AGAAAGCGGTGGCAGTGCCTGCGAAGCTGTTCAAGGAGGTA < 41bp 0.537718669703319 0.827196610410767 NA NA prediction 0.578955881414897 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130378625 chr6:130378624 synonymous SNV . 0 20 hm7G_associated_SNPs_14992 0 0 0 0 2 L3MBTL3 chr6:130378551 3'AG 130378551 Downstream 74bp 14408 chr6 130378624 130378624 1 + G T LUAD 130378625 + 130378605 130378645 41 AGAAAGCGGTGGCAGTGCCGGCGAAGCTGTTCAAGGAGGTA AGAAAGCGGTGGCAGTGCCTGCGAAGCTGTTCAAGGAGGTA < 41bp 0.537718669703319 0.827196610410767 NA NA prediction 0.578955881414897 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130378625 chr6:130378624 synonymous SNV . 0 20 hm7G_associated_SNPs_14992 0 0 0 0 2 L3MBTL3 chr6:130378642 5'GT 130378642 Upstream 19bp 14409 chr1 91967349 91967349 1 + G T SKCM 91967350 + 91967330 91967370 41 TGACCGGTTTCAGGCTGAAGGCTCTTTAAAAAAAAACGAGC TGACCGGTTTCAGGCTGAATGCTCTTTAAAAAAAAACGAGC < 41bp 0.52948052214302 0.818954983659646 NA NA prediction 0.578948923033251 Functional Gain - CDC7 ENSG00000097046 CDS Human protein_coding chr1:91967350 chr1:91967349 nonsynonymous SNV 0.179 2 20 hm7G_associated_SNPs_14993 0 0 1 0 1 CDC7 chr1:91967388 5'GT 91967388 Upstream 40bp 14410 chr14 21423997 21423997 1 + G T LUAD 21423998 + 21423978 21424018 41 GGGGCTTCTGGCTGTGGAGGGCTCACTCCATGTCAAACCTC GGGGCTTCTGGCTGTGGAGTGCTCACTCCATGTCAAACCTC < 41bp 0.487800983921828 0.789468970215256 NA NA prediction 0.578937940430511 Functional Gain - RNASE2 ENSG00000169385 CDS Human protein_coding chr14:21423998 chr14:21423997 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_14994 0 0 0 0 1 RNASE2 chr14:21423926 3'AG 21423926 Downstream 72bp 14411 chr4 115585172 115585172 1 + G T ESCA 115585173 + 115585153 115585193 41 TCTCCAAAGATGGGTAAATGGTGCTAATGAACATGGCTTTG TCTCCAAAGATGGGTAAATTGTGCTAATGAACATGGCTTTG < 41bp 0.49284274838787 0.789443036815579 NA NA prediction 0.578886073631159 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115585173 chr4:115585172 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_14997 0 0 1 5 1 UGT8 chr4:115585151 3'AG 115585151 Downstream 22bp 14412 chr5 55056085 55056085 1 + G T LUAD 55056086 + 55056066 55056106 41 AAAAGTGGATTTGCCTCTGGGCGGAATTTTGGAAACAGAGG AAAAGTGGATTTGCCTCTGTGCGGAATTTTGGAAACAGAGG < 41bp 0.51259143418087 0.801988078936576 NA NA prediction 0.578793289511412 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55056086 chr5:55056085 nonsynonymous SNV 0.157 4 20 hm7G_associated_SNPs_15000 0 0 0 0 2 DDX4 chr5:55056028 3'AG 55056028 Downstream 58bp 14413 chr5 55056085 55056085 1 + G T LUAD 55056086 + 55056066 55056106 41 AAAAGTGGATTTGCCTCTGGGCGGAATTTTGGAAACAGAGG AAAAGTGGATTTGCCTCTGTGCGGAATTTTGGAAACAGAGG < 41bp 0.51259143418087 0.801988078936576 NA NA prediction 0.578793289511412 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55056086 chr5:55056085 nonsynonymous SNV 0.157 4 20 hm7G_associated_SNPs_15000 0 0 0 0 2 DDX4 chr5:55056105 5'GT 55056105 Upstream 21bp 14414 chr2 27292983 27292983 1 + G T COAD 27292984 + 27292964 27293004 41 CCTCAGGCCAGGCCCCCACGGCCCCGCTCTGCCCCTGCCTT CCTCAGGCCAGGCCCCCACTGCCCCGCTCTGCCCCTGCCTT < 41bp 0.469068477233736 0.789382886595137 NA NA prediction 0.578765773190274 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27292984 chr2:27292983 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15004 0 0 0 0 1 AGBL5 chr2:27292960 3'AG 27292960 Downstream 24bp 14415 chr4 56832016 56832016 1 + G T LUSC 56832017 + 56831997 56832037 41 CTGCTGATAAAGAGCTTGGGGAAGCAAAGGTAATGAATGAT CTGCTGATAAAGAGCTTGGTGAAGCAAAGGTAATGAATGAT < 41bp 0.520447121170677 0.809826717464111 NA NA prediction 0.578759192586867 Functional Gain - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56832017 chr4:56832016 synonymous SNV . 0 20 hm7G_associated_SNPs_15005 0 0 1 0 1 CEP135 chr4:56832025 5'GT 56832025 Upstream 10bp 14416 chr8 104330981 104330981 1 + G T LUSC 104330982 + 104330962 104331002 41 AAATTAATTGACACTTTTGGGATCCGATGGCCTGAGGAGCT AAATTAATTGACACTTTTGTGATCCGATGGCCTGAGGAGCT < 41bp 0.494426490146023 0.789364001384654 NA NA prediction 0.578728002769308 Functional Gain - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104330982 chr8:104330981 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_15007 0 0 1 0 1 FZD6 chr8:104331014 5'GT 104331014 Upstream 34bp 14417 chr1 182787814 182787814 1 + G T LUAD 182787815 + 182787795 182787835 41 CAGTTTGCTTTCCTTTTTGGGGTGGATGAGGTAAGTCACCC CAGTTTGCTTTCCTTTTTGTGGTGGATGAGGTAAGTCACCC < 41bp 0.539042496385205 0.828401956562114 NA NA prediction 0.578718920353818 Functional Gain - NPL ENSG00000135838 CDS Human protein_coding chr1:182787815 chr1:182787814 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_15008 0 0 0 0 1 NPL chr1:182787824 5'GT 182787824 Upstream 11bp 14418 chr1 897301 897301 1 + G T KIRC 897302 + 897282 897322 41 TCGACCCCTCCAACTGCCTGGGTATCCGGGGCTTTGCCGAT TCGACCCCTCCAACTGCCTTGGTATCCGGGGCTTTGCCGAT < 41bp 0.447571406072736 0.789356502731894 NA NA prediction 0.578713005463789 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:897302 chr1:897301 synonymous SNV . 0 20 hm7G_associated_SNPs_15010 0 0 1 0 1 KLHL17 chr1:897206 3'AG 897206 Downstream 96bp 14419 chr17 64492374 64492374 1 + G T THCA 64492375 + 64492355 64492395 41 TTGTTACTTTTTCTTGTCCGGGTGCGGATAAGGGACCCGAC TTGTTACTTTTTCTTGTCCTGGTGCGGATAAGGGACCCGAC < 41bp 0.512063028139392 0.801401928987064 NA NA prediction 0.578677801695344 Functional Gain - PRKCA ENSG00000154229 CDS Human protein_coding chr17:64492375 chr17:64492374 synonymous SNV . 0 20 hm7G_associated_SNPs_15012 0 0 1 0 2 PRKCA chr17:64492319 3'AG 64492319 Downstream 56bp 14420 chr17 64492374 64492374 1 + G T THCA 64492375 + 64492355 64492395 41 TTGTTACTTTTTCTTGTCCGGGTGCGGATAAGGGACCCGAC TTGTTACTTTTTCTTGTCCTGGTGCGGATAAGGGACCCGAC < 41bp 0.512063028139392 0.801401928987064 NA NA prediction 0.578677801695344 Functional Gain - PRKCA ENSG00000154229 CDS Human protein_coding chr17:64492375 chr17:64492374 synonymous SNV . 0 20 hm7G_associated_SNPs_15012 0 0 1 0 2 PRKCA chr17:64492401 5'GT 64492401 Upstream 28bp 14421 chr5 156721803 156721803 1 + G T BLCA 156721804 + 156721784 156721824 41 CATTTCAGAATGAGATGCTGGAGGAAGGACATGAGTATGCG CATTTCAGAATGAGATGCTTGAGGAAGGACATGAGTATGCG < 41bp 0.473027590339572 0.789329167793509 NA NA prediction 0.578658335587018 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156721804 chr5:156721803 synonymous SNV . 0 20 hm7G_associated_SNPs_15014 0 0 1 0 1 CYFIP2 chr5:156721792 3'AG 156721792 Downstream 12bp 14422 chr13 61109366 61109366 1 + G T LUSC 61109367 + 61109347 61109387 41 CCCATTCAAACAGAGGCATGGGTACGTGATACATATTCTGT CCCATTCAAACAGAGGCATTGGTACGTGATACATATTCTGT < 41bp 0.511927556228421 0.801255385691782 NA NA prediction 0.578655658926722 Functional Gain - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61109367 chr13:61109366 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15015 0 0 0 0 1 TDRD3 chr13:61109367 5'GT 61109367 Upstream 2bp 14423 chr2 74140752 74140752 1 + G T LUSC 74140753 + 74140733 74140773 41 GAAGATCCTCACAGAGAGAGGCTATTCCTTTGTGACCACAG GAAGATCCTCACAGAGAGATGCTATTCCTTTGTGACCACAG < 41bp 0.544578815090435 0.833902213100877 NA NA prediction 0.578646796020884 Functional Gain - ACTG2 ENSG00000163017 CDS Human protein_coding chr2:74140753 chr2:74140752 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15016 0 0 0 0 1 ACTG2 chr2:74140773 5'GT 74140773 Upstream 22bp 14424 chr3 14939479 14939479 1 + G T rs2164356 14939480 + 14939460 14939500 41 AGGTAGCTGACGTCTTCCTGGCCCGGGAGCAGGGGTTTGAT AGGTAGCTGACGTCTTCCTTGCCCGGGAGCAGGGGTTTGAT < 41bp 0.566672882833069 0.855990274879618 NA NA prediction 0.578634784093097 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14939480 chr3:14939479 synonymous SNV . 0 20 hm7G_associated_SNPs_15017 0 0 0 0 1 FGD5 chr3:14939446 3'AG 14939446 Downstream 34bp 14425 chr8 75926229 75926229 1 + G T LUSC 75926230 + 75926210 75926250 41 TTTCTAACATAGGTCGTGTGGGCAACTAGTAACAGAATCGG TTTCTAACATAGGTCGTGTTGGCAACTAGTAACAGAATCGG < 41bp 0.532584409786273 0.821898227712367 NA NA prediction 0.578627635852188 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75926230 chr8:75926229 nonsynonymous SNV 0.964 4 20 hm7G_associated_SNPs_15018 0 0 0 0 1 CRISPLD1 chr8:75926222 3'AG 75926222 Downstream 8bp 14426 chr12 8628784 8628784 1 + G T SKCM 8628785 + 8628765 8628805 41 GGGGCTTTCAGACCCACAAGGTAATAATAATTGGCAATGGA GGGGCTTTCAGACCCACAATGTAATAATAATTGGCAATGGA < 41bp 0.508413012049918 0.797714957481224 NA NA prediction 0.578603890862613 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8628785 chr12:8628784 nonsynonymous SNV 0.957 3 20 hm7G_associated_SNPs_15021 0 0 0 0 2 CLEC6A chr12:8628721 3'AG 8628721 Downstream 64bp 14427 chr12 8628784 8628784 1 + G T SKCM 8628785 + 8628765 8628805 41 GGGGCTTTCAGACCCACAAGGTAATAATAATTGGCAATGGA GGGGCTTTCAGACCCACAATGTAATAATAATTGGCAATGGA < 41bp 0.508413012049918 0.797714957481224 NA NA prediction 0.578603890862613 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8628785 chr12:8628784 nonsynonymous SNV 0.957 3 20 hm7G_associated_SNPs_15021 0 0 0 0 2 CLEC6A chr12:8628836 5'GT 8628836 Upstream 53bp 14428 chrX 107865959 107865959 1 + G T UCEC 107865960 + 107865940 107865980 41 TGGCCCTACAGGAGAAAAAGGTAGTAAAGGAGAGCCTGGCC TGGCCCTACAGGAGAAAAATGTAGTAAAGGAGAGCCTGGCC < 41bp 0.475937861710449 0.789281125543228 NA NA prediction 0.578562251086456 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107865960 chrX:107865959 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_15023 1 0 0 0 2 COL4A5 chrX:107865906 3'AG 107865906 Downstream 54bp 14429 chrX 107865959 107865959 1 + G T UCEC 107865960 + 107865940 107865980 41 TGGCCCTACAGGAGAAAAAGGTAGTAAAGGAGAGCCTGGCC TGGCCCTACAGGAGAAAAATGTAGTAAAGGAGAGCCTGGCC < 41bp 0.475937861710449 0.789281125543228 NA NA prediction 0.578562251086456 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107865960 chrX:107865959 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_15023 1 0 0 0 2 COL4A5 chrX:107866055 5'GT 107866055 Upstream 97bp 14430 chr22 31655172 31655172 1 + G T CHOL 31655173 + 31655153 31655193 41 GCTGCAAGGTGATCATTGAGGATGGGGATGCATATGCACTG GCTGCAAGGTGATCATTGATGATGGGGATGCATATGCACTG < 41bp 0.470527119696232 0.789275169777 NA NA prediction 0.578550339553999 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31655173 chr22:31655172 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15024 0 0 1 0 2 LIMK2 chr22:31655107 3'AG 31655107 Downstream 66bp 14431 chr22 31655172 31655172 1 + G T CHOL 31655173 + 31655153 31655193 41 GCTGCAAGGTGATCATTGAGGATGGGGATGCATATGCACTG GCTGCAAGGTGATCATTGATGATGGGGATGCATATGCACTG < 41bp 0.470527119696232 0.789275169777 NA NA prediction 0.578550339553999 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31655173 chr22:31655172 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15024 0 0 1 0 2 LIMK2 chr22:31655216 5'GT 31655216 Upstream 45bp 14432 chr5 5303568 5303568 1 + G T LUAD 5303569 + 5303549 5303589 41 CCCACCTGCATGGAGCGCCGGGCCCTGGGCAGAGGTAACCA CCCACCTGCATGGAGCGCCTGGCCCTGGGCAGAGGTAACCA < 41bp 0.552810492842338 0.842082956918274 NA NA prediction 0.578544928151871 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303569 chr5:5303568 nonsynonymous SNV 0.610 4 20 hm7G_associated_SNPs_15027 0 0 0 0 1 ADAMTS16 chr5:5303582 5'GT 5303582 Upstream 15bp 14433 chr2 24881553 24881553 1 + G T LUSC 24881554 + 24881534 24881574 41 GAAGTTTTTCAACATGAGTGGCCTCGGGGACAGTTCATCCG GAAGTTTTTCAACATGAGTTGCCTCGGGGACAGTTCATCCG < 41bp 0.475685876365637 0.789263784332984 NA NA prediction 0.578527568665969 Functional Gain - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24881554 chr2:24881553 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15029 0 0 1 0 2 NCOA1 chr2:24881530 3'AG 24881530 Downstream 24bp 14434 chr2 24881553 24881553 1 + G T LUSC 24881554 + 24881534 24881574 41 GAAGTTTTTCAACATGAGTGGCCTCGGGGACAGTTCATCCG GAAGTTTTTCAACATGAGTTGCCTCGGGGACAGTTCATCCG < 41bp 0.475685876365637 0.789263784332984 NA NA prediction 0.578527568665969 Functional Gain - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24881554 chr2:24881553 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15029 0 0 1 0 2 NCOA1 chr2:24881635 5'GT 24881635 Upstream 83bp 14435 chr3 23541157 23541157 1 + G T UCEC 23541158 + 23541138 23541178 41 AACTATATTGGGACCCCCAGGATCTGTCTATGAAGGAGGGG AACTATATTGGGACCCCCATGATCTGTCTATGAAGGAGGGG < 41bp 0.484585923488051 0.789263150367412 NA NA prediction 0.578526300734823 Functional Gain - UBE2E2 ENSG00000182247 CDS Human protein_coding chr3:23541158 chr3:23541157 stopgain 1.000 1 20 hm7G_associated_SNPs_15030 0 0 1 0 2 UBE2E2 chr3:23541099 3'AG 23541099 Downstream 59bp 14436 chr3 23541157 23541157 1 + G T UCEC 23541158 + 23541138 23541178 41 AACTATATTGGGACCCCCAGGATCTGTCTATGAAGGAGGGG AACTATATTGGGACCCCCATGATCTGTCTATGAAGGAGGGG < 41bp 0.484585923488051 0.789263150367412 NA NA prediction 0.578526300734823 Functional Gain - UBE2E2 ENSG00000182247 CDS Human protein_coding chr3:23541158 chr3:23541157 stopgain 1.000 1 20 hm7G_associated_SNPs_15030 0 0 1 0 2 UBE2E2 chr3:23541231 5'GT 23541231 Upstream 75bp 14437 chr4 42003751 42003751 1 + G T SKCM 42003752 + 42003732 42003772 41 ATGTTCAGAAAGAAGGACAGGGATCACAAACACTCAGAGTG ATGTTCAGAAAGAAGGACATGGATCACAAACACTCAGAGTG < 41bp 0.49953513698981 0.789260998789642 NA NA prediction 0.578521997579283 Functional Gain - SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42003752 chr4:42003751 nonsynonymous SNV 0.965 0 20 hm7G_associated_SNPs_15031 0 0 1 0 1 SLC30A9 chr4:42003797 5'GT 42003797 Upstream 47bp 14438 chr2 98351885 98351885 1 + G T UCEC 98351886 + 98351866 98351906 41 GGTCATGGAGATGGCTGGGGGCGGGCCGCTGCACAAGTTCC GGTCATGGAGATGGCTGGGTGCGGGCCGCTGCACAAGTTCC < 41bp 0.548381629458115 0.837642180336855 NA NA prediction 0.578521101757481 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98351886 chr2:98351885 nonsynonymous SNV 0.071 1 20 hm7G_associated_SNPs_15032 0 0 0 0 1 ZAP70 chr2:98351919 5'GT 98351919 Upstream 35bp 14439 chr17 79769355 79769355 1 + G T CESC 79769356 + 79769336 79769376 41 TGAAAGCCAGCTCCGTGCTGGTCATTGATGGGCTGCTCAGG TGAAAGCCAGCTCCGTGCTTGTCATTGATGGGCTGCTCAGG < 41bp 0.465547002253946 0.789258565201404 NA NA prediction 0.578517130402807 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769356 chr17:79769355 synonymous SNV . 0 20 hm7G_associated_SNPs_15033 0 0 0 0 2 GCGR chr17:79769280 3'AG 79769280 Downstream 76bp 14440 chr17 79769355 79769355 1 + G T CESC 79769356 + 79769336 79769376 41 TGAAAGCCAGCTCCGTGCTGGTCATTGATGGGCTGCTCAGG TGAAAGCCAGCTCCGTGCTTGTCATTGATGGGCTGCTCAGG < 41bp 0.465547002253946 0.789258565201404 NA NA prediction 0.578517130402807 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769356 chr17:79769355 synonymous SNV . 0 20 hm7G_associated_SNPs_15033 0 0 0 0 2 GCGR chr17:79769436 5'GT 79769436 Upstream 82bp 14441 chr1 9781870 9781870 1 + G T UCEC 9781871 + 9781851 9781891 41 GCTTCGGCCTCATCCTGGAGGCCTACTGCAGGGGCAGCACC GCTTCGGCCTCATCCTGGATGCCTACTGCAGGGGCAGCACC < 41bp 0.562423603102103 0.851668774976413 NA NA prediction 0.57849034374862 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781871 chr1:9781870 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15035 0 0 0 0 2 PIK3CD chr1:9781819 3'AG 9781819 Downstream 52bp 14442 chr1 9781870 9781870 1 + G T UCEC 9781871 + 9781851 9781891 41 GCTTCGGCCTCATCCTGGAGGCCTACTGCAGGGGCAGCACC GCTTCGGCCTCATCCTGGATGCCTACTGCAGGGGCAGCACC < 41bp 0.562423603102103 0.851668774976413 NA NA prediction 0.57849034374862 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781871 chr1:9781870 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15035 0 0 0 0 2 PIK3CD chr1:9781918 5'GT 9781918 Upstream 49bp 14443 chr3 134264444 134264444 1 + G T LIHC 134264445 + 134264425 134264465 41 TAGGCTCAGCTTGTCAATCGGAAACAGAAATTAGAGTCTGT TAGGCTCAGCTTGTCAATCTGAAACAGAAATTAGAGTCTGT < 41bp 0.52152573536412 0.810753317049245 NA NA prediction 0.578455163370249 Functional Gain - CEP63 ENSG00000182923 CDS Human protein_coding chr3:134264445 chr3:134264444 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15037 0 0 0 0 1 CEP63 chr3:134264428 3'AG 134264428 Downstream 17bp 14444 chr11 7441832 7441832 1 + G T LUAD 7441833 + 7441813 7441853 41 GAAATGTTGTCATATCCTCGGAAGCCCATTGCACACTGGCA GAAATGTTGTCATATCCTCTGAAGCCCATTGCACACTGGCA < 41bp 0.478981457301569 0.78920630879174 NA NA prediction 0.57841261758348 Functional Gain - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7441833 chr11:7441832 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15038 0 0 1 2 1 SYT9 chr11:7441866 5'GT 7441866 Upstream 35bp 14445 chr1 57378115 57378115 1 + G T UCEC 57378116 + 57378096 57378136 41 GCTGCGGCACACAAGCCTGGGGCCTCTGGAGGCCAAGCGCC GCTGCGGCACACAAGCCTGTGGCCTCTGGAGGCCAAGCGCC < 41bp 0.561229199539177 0.85043097881009 NA NA prediction 0.578403558541826 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57378116 chr1:57378115 nonsynonymous SNV 0.248 4 20 hm7G_associated_SNPs_15039 0 0 1 0 1 C8A chr1:57378076 3'AG 57378076 Downstream 40bp 14446 chr2 233392972 233392972 1 + G T COAD 233392973 + 233392953 233392993 41 CATGCCTTTGGGATTCCAGGGCTGGACAGACAACCGGCTGA CATGCCTTTGGGATTCCAGTGCTGGACAGACAACCGGCTGA < 41bp 0.547847523433073 0.837031068111197 NA NA prediction 0.578367089356248 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233392973 chr2:233392972 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_15041 0 0 0 0 2 CHRND chr2:233392972 3'AG 233392972 Downstream 1bp 14447 chr2 233392972 233392972 1 + G T COAD 233392973 + 233392953 233392993 41 CATGCCTTTGGGATTCCAGGGCTGGACAGACAACCGGCTGA CATGCCTTTGGGATTCCAGTGCTGGACAGACAACCGGCTGA < 41bp 0.547847523433073 0.837031068111197 NA NA prediction 0.578367089356248 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233392973 chr2:233392972 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_15041 0 0 0 0 2 CHRND chr2:233393049 5'GT 233393049 Upstream 78bp 14448 chr2 241533448 241533448 1 + G T COAD 241533449 + 241533429 241533469 41 GGGCCGGCGGTGCTGGCAGGGGCTCTGGAGAGAGGGGTGAG GGGCCGGCGGTGCTGGCAGTGGCTCTGGAGAGAGGGGTGAG < 41bp 0.548485063225717 0.83763100061569 NA NA prediction 0.578291874779947 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533449 chr2:241533448 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15044 0 0 1 0 1 CAPN10 chr2:241533464 5'GT 241533464 Upstream 17bp 14449 chr19 7076442 7076442 1 + G T COAD 7076443 + 7076423 7076463 41 AGTTCACCCAGGAGGAGTGGGCATTGCTGGACCCTGCCCAA AGTTCACCCAGGAGGAGTGTGCATTGCTGGACCCTGCCCAA < 41bp 0.566928738186546 0.856056873318523 NA NA prediction 0.578256270263953 Functional Gain - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7076443 chr19:7076442 nonsynonymous SNV 0.230 3 20 hm7G_associated_SNPs_15046 0 0 1 0 2 ZNF557 chr19:7076392 3'AG 7076392 Downstream 51bp 14450 chr19 7076442 7076442 1 + G T COAD 7076443 + 7076423 7076463 41 AGTTCACCCAGGAGGAGTGGGCATTGCTGGACCCTGCCCAA AGTTCACCCAGGAGGAGTGTGCATTGCTGGACCCTGCCCAA < 41bp 0.566928738186546 0.856056873318523 NA NA prediction 0.578256270263953 Functional Gain - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7076443 chr19:7076442 nonsynonymous SNV 0.230 3 20 hm7G_associated_SNPs_15046 0 0 1 0 2 ZNF557 chr19:7076518 5'GT 7076518 Upstream 77bp 14451 chr12 32854484 32854484 1 + G T LGG 32854485 + 32854465 32854505 41 AGATAAACGGAAAACAACAGGAGAAGAAAATGGTAAATTTC AGATAAACGGAAAACAACATGAGAAGAAAATGGTAAATTTC < 41bp 0.494855913831598 0.789113929398405 NA NA prediction 0.57822785879681 Functional Gain - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32854485 chr12:32854484 stopgain 1.000 1 20 hm7G_associated_SNPs_15047 0 0 1 0 1 DNM1L chr12:32854496 5'GT 32854496 Upstream 13bp 14452 chr9 131008720 131008720 1 + G T LUAD 131008721 + 131008701 131008741 41 TGGACAACCTCAAGCTGCGGGACGTGGAGAAGGGCTTTATG TGGACAACCTCAAGCTGCGTGACGTGGAGAAGGGCTTTATG < 41bp 0.55099177271615 0.840072523413941 NA NA prediction 0.578161501395583 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131008721 chr9:131008720 synonymous SNV . 0 20 hm7G_associated_SNPs_15048 0 0 1 0 2 DNM1 chr9:131008673 3'AG 131008673 Downstream 48bp 14453 chr9 131008720 131008720 1 + G T LUAD 131008721 + 131008701 131008741 41 TGGACAACCTCAAGCTGCGGGACGTGGAGAAGGGCTTTATG TGGACAACCTCAAGCTGCGTGACGTGGAGAAGGGCTTTATG < 41bp 0.55099177271615 0.840072523413941 NA NA prediction 0.578161501395583 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:131008721 chr9:131008720 synonymous SNV . 0 20 hm7G_associated_SNPs_15048 0 0 1 0 2 DNM1 chr9:131008782 5'GT 131008782 Upstream 63bp 14454 chr1 116226625 116226625 1 + G T READ 116226626 + 116226606 116226646 41 GCTGCAGCTGCTCGGCGCAGGGACTCAAGCCACAACGAGTT GCTGCAGCTGCTCGGCGCATGGACTCAAGCCACAACGAGTT < 41bp 0.459163551780584 0.789068463783426 NA NA prediction 0.578136927566851 Functional Gain - VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116226626 chr1:116226625 nonsynonymous SNV 0.861 3 20 hm7G_associated_SNPs_15050 0 0 1 0 2 VANGL1 chr1:116226565 3'AG 116226565 Downstream 61bp 14455 chr1 116226625 116226625 1 + G T READ 116226626 + 116226606 116226646 41 GCTGCAGCTGCTCGGCGCAGGGACTCAAGCCACAACGAGTT GCTGCAGCTGCTCGGCGCATGGACTCAAGCCACAACGAGTT < 41bp 0.459163551780584 0.789068463783426 NA NA prediction 0.578136927566851 Functional Gain - VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116226626 chr1:116226625 nonsynonymous SNV 0.861 3 20 hm7G_associated_SNPs_15050 0 0 1 0 2 VANGL1 chr1:116226697 5'GT 116226697 Upstream 73bp 14456 chr2 242812052 242812052 1 + G T COAD 242812053 + 242812033 242812073 41 GTGGTGTCCAGTACCTGCTGGTGGGGCTCTCGAGGTGCGGC GTGGTGTCCAGTACCTGCTTGTGGGGCTCTCGAGGTGCGGC < 41bp 0.492498016201005 0.789053868805652 NA NA prediction 0.578107737611304 Functional Gain - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242812053 chr2:242812052 synonymous SNV . 0 20 hm7G_associated_SNPs_15052 0 0 0 0 1 RTP5 chr2:242812066 5'GT 242812066 Upstream 15bp 14457 chr20 32664611 32664611 1 + G T LUSC 32664612 + 32664592 32664632 41 AGATCGCTGCGGAGCAAAAGGCCAATCCAGGTCAGCCTCTG AGATCGCTGCGGAGCAAAATGCCAATCCAGGTCAGCCTCTG < 41bp 0.559205804781715 0.848258332782545 NA NA prediction 0.578105056001659 Functional Gain - RALY ENSG00000125970 CDS Human protein_coding chr20:32664612 chr20:32664611 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_15053 0 0 1 0 1 RALY chr20:32664621 5'GT 32664621 Upstream 11bp 14458 chrX 18638042 18638042 1 + G T BRCA 18638043 + 18638023 18638063 41 CAAGGAAAAAGAGAAGCAAGGATTTTTCAGGTCAATGAAAA CAAGGAAAAAGAGAAGCAATGATTTTTCAGGTCAATGAAAA < 41bp 0.482276374575682 0.789038291976653 NA NA prediction 0.578076583953306 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18638043 chrX:18638042 stopgain 1.000 1 20 hm7G_associated_SNPs_15054 0 0 0 0 2 CDKL5 chrX:18637987 3'AG 18637987 Downstream 56bp 14459 chrX 18638042 18638042 1 + G T BRCA 18638043 + 18638023 18638063 41 CAAGGAAAAAGAGAAGCAAGGATTTTTCAGGTCAATGAAAA CAAGGAAAAAGAGAAGCAATGATTTTTCAGGTCAATGAAAA < 41bp 0.482276374575682 0.789038291976653 NA NA prediction 0.578076583953306 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18638043 chrX:18638042 stopgain 1.000 1 20 hm7G_associated_SNPs_15054 0 0 0 0 2 CDKL5 chrX:18638086 5'GT 18638086 Upstream 45bp 14460 chr4 47574221 47574221 1 + G T LUAD 47574222 + 47574202 47574242 41 AGTGGCAGACATTGGGATAGGGGTCTCAGGTCAAGAAGGCA AGTGGCAGACATTGGGATATGGGTCTCAGGTCAAGAAGGCA < 41bp 0.549119876762591 0.838140695318414 NA NA prediction 0.578041637111647 Functional Gain - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47574222 chr4:47574221 nonsynonymous SNV 0.286 5 20 hm7G_associated_SNPs_15057 0 0 0 0 2 ATP10D chr4:47574171 3'AG 47574171 Downstream 51bp 14461 chr4 47574221 47574221 1 + G T LUAD 47574222 + 47574202 47574242 41 AGTGGCAGACATTGGGATAGGGGTCTCAGGTCAAGAAGGCA AGTGGCAGACATTGGGATATGGGTCTCAGGTCAAGAAGGCA < 41bp 0.549119876762591 0.838140695318414 NA NA prediction 0.578041637111647 Functional Gain - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47574222 chr4:47574221 nonsynonymous SNV 0.286 5 20 hm7G_associated_SNPs_15057 0 0 0 0 2 ATP10D chr4:47574247 5'GT 47574247 Upstream 27bp 14462 chr12 31819052 31819052 1 + G T STAD 31819053 + 31819033 31819073 41 TAATCCTGATGTTGTCAGAGGAAAATCTGTATTAGATCTTG TAATCCTGATGTTGTCAGATGAAAATCTGTATTAGATCTTG < 41bp 0.528849146811929 0.817860134245855 NA NA prediction 0.578021974867852 Functional Gain - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31819053 chr12:31819052 stopgain 0.999 1 20 hm7G_associated_SNPs_15059 0 0 0 0 2 ETFBKMT chr12:31819021 3'AG 31819021 Downstream 32bp 14463 chr12 31819052 31819052 1 + G T STAD 31819053 + 31819033 31819073 41 TAATCCTGATGTTGTCAGAGGAAAATCTGTATTAGATCTTG TAATCCTGATGTTGTCAGATGAAAATCTGTATTAGATCTTG < 41bp 0.528849146811929 0.817860134245855 NA NA prediction 0.578021974867852 Functional Gain - ETFBKMT ENSG00000139160 CDS Human protein_coding chr12:31819053 chr12:31819052 stopgain 0.999 1 20 hm7G_associated_SNPs_15059 0 0 0 0 2 ETFBKMT chr12:31819151 5'GT 31819151 Upstream 100bp 14464 chr20 47592562 47592562 1 + G T STAD 47592563 + 47592543 47592583 41 TTCTCCGCAGGTCAGGAGAGGCTCACGGATCAGGAAATAGG TTCTCCGCAGGTCAGGAGATGCTCACGGATCAGGAAATAGG < 41bp 0.537008831061709 0.826012145545763 NA NA prediction 0.578006628968107 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47592563 chr20:47592562 nonsynonymous SNV 0.860 1 20 hm7G_associated_SNPs_15061 0 0 1 0 1 ARFGEF2 chr20:47592553 3'AG 47592553 Downstream 10bp 14465 chr3 39171768 39171768 1 + G T COAD 39171769 + 39171749 39171789 41 CCCTGGAGGTCTATGATGAGGCCTATAGACAGAACCCACAT CCCTGGAGGTCTATGATGATGCCTATAGACAGAACCCACAT < 41bp 0.464313151558927 0.788997720627733 NA NA prediction 0.577995441255466 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39171769 chr3:39171768 nonsynonymous SNV 0.968 0 20 hm7G_associated_SNPs_15062 0 0 0 0 2 TTC21A chr3:39171739 3'AG 39171739 Downstream 30bp 14466 chr3 39171768 39171768 1 + G T COAD 39171769 + 39171749 39171789 41 CCCTGGAGGTCTATGATGAGGCCTATAGACAGAACCCACAT CCCTGGAGGTCTATGATGATGCCTATAGACAGAACCCACAT < 41bp 0.464313151558927 0.788997720627733 NA NA prediction 0.577995441255466 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39171769 chr3:39171768 nonsynonymous SNV 0.968 0 20 hm7G_associated_SNPs_15062 0 0 0 0 2 TTC21A chr3:39171849 5'GT 39171849 Upstream 82bp 14467 chr8 38808436 38808436 1 + G T rs528896922 38808437 + 38808417 38808457 41 TAGCAGCTCCTCCAGCCCTGGAGAAGAAGCCACAGGTGGCC TAGCAGCTCCTCCAGCCCTTGAGAAGAAGCCACAGGTGGCC < 41bp 0.556363226125618 0.845320026661096 NA NA prediction 0.577913601070958 Functional Gain - PLEKHA2 ENSG00000169499 CDS Human protein_coding chr8:38808437 chr8:38808436 synonymous SNV . 0 20 hm7G_associated_SNPs_15066 0 0 0 0 2 PLEKHA2 chr8:38808368 3'AG 38808368 Downstream 69bp 14468 chr8 38808436 38808436 1 + G T rs528896922 38808437 + 38808417 38808457 41 TAGCAGCTCCTCCAGCCCTGGAGAAGAAGCCACAGGTGGCC TAGCAGCTCCTCCAGCCCTTGAGAAGAAGCCACAGGTGGCC < 41bp 0.556363226125618 0.845320026661096 NA NA prediction 0.577913601070958 Functional Gain - PLEKHA2 ENSG00000169499 CDS Human protein_coding chr8:38808437 chr8:38808436 synonymous SNV . 0 20 hm7G_associated_SNPs_15066 0 0 0 0 2 PLEKHA2 chr8:38808508 5'GT 38808508 Upstream 73bp 14469 chr6 35280413 35280413 1 + G T LUSC 35280414 + 35280394 35280434 41 GGCTGGCAGGGCTACCTGTGGAAGCGAGGGCACCTGAGAAG GGCTGGCAGGGCTACCTGTTGAAGCGAGGGCACCTGAGAAG < 41bp 0.557102766282386 0.846056242013635 NA NA prediction 0.577906951462499 Functional Gain - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35280414 chr6:35280413 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15069 0 0 0 0 1 DEF6 chr6:35280403 3'AG 35280403 Downstream 11bp 14470 chrX 105197095 105197095 1 + G T STAD 105197096 + 105197076 105197116 41 GTGCGCTCTTTGCAATCCAGGGTTCTGGAAAGTGAGCTGAA GTGCGCTCTTTGCAATCCATGGTTCTGGAAAGTGAGCTGAA < 41bp 0.482457912038537 0.788942007401931 NA NA prediction 0.577884014803861 Functional Gain - NRK ENSG00000123572 CDS Human protein_coding chrX:105197096 chrX:105197095 nonsynonymous SNV 0.318 1 20 hm7G_associated_SNPs_15070 0 0 0 0 2 NRK chrX:105197026 3'AG 105197026 Downstream 70bp 14471 chrX 105197095 105197095 1 + G T STAD 105197096 + 105197076 105197116 41 GTGCGCTCTTTGCAATCCAGGGTTCTGGAAAGTGAGCTGAA GTGCGCTCTTTGCAATCCATGGTTCTGGAAAGTGAGCTGAA < 41bp 0.482457912038537 0.788942007401931 NA NA prediction 0.577884014803861 Functional Gain - NRK ENSG00000123572 CDS Human protein_coding chrX:105197096 chrX:105197095 nonsynonymous SNV 0.318 1 20 hm7G_associated_SNPs_15070 0 0 0 0 2 NRK chrX:105197165 5'GT 105197165 Upstream 71bp 14472 chr15 38591738 38591738 1 + G T SARC 38591739 + 38591719 38591759 41 ATCCGTGGAGAGCGACTCAGGGACAAAATGGTAATGAATAA ATCCGTGGAGAGCGACTCATGGACAAAATGGTAATGAATAA < 41bp 0.516601706049472 0.805536921751165 NA NA prediction 0.577870431403386 Functional Gain - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38591739 chr15:38591738 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15071 0 0 1 0 1 SPRED1 chr15:38591748 5'GT 38591748 Upstream 11bp 14473 chr15 99486202 99486202 1 + G T UCEC 99486203 + 99486183 99486223 41 AGACTATTACCGGAAAGGAGGGAAAGGGCTGCTGCCCGTGC AGACTATTACCGGAAAGGATGGAAAGGGCTGCTGCCCGTGC < 41bp 0.474706451318622 0.788904279118099 NA NA prediction 0.577808558236198 Functional Gain - IGF1R ENSG00000140443 CDS Human protein_coding chr15:99486203 chr15:99486202 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_15074 0 0 1 0 2 IGF1R chr15:99486152 3'AG 99486152 Downstream 51bp 14474 chr15 99486202 99486202 1 + G T UCEC 99486203 + 99486183 99486223 41 AGACTATTACCGGAAAGGAGGGAAAGGGCTGCTGCCCGTGC AGACTATTACCGGAAAGGATGGAAAGGGCTGCTGCCCGTGC < 41bp 0.474706451318622 0.788904279118099 NA NA prediction 0.577808558236198 Functional Gain - IGF1R ENSG00000140443 CDS Human protein_coding chr15:99486203 chr15:99486202 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_15074 0 0 1 0 2 IGF1R chr15:99486281 5'GT 99486281 Upstream 80bp 14475 chr6 24357729 24357729 1 - C A LUAD 24357728 - 24357708 24357748 41 AGACCAGATCCAGAGCGGGGGCAATTACGTGGCTGGAGGCC AGACCAGATCCAGAGCGGGTGCAATTACGTGGCTGGAGGCC < 41bp 0.538692400343586 0.827596369826874 NA NA prediction 0.577807938966577 Functional Gain - DCDC2 ENSG00000146038 CDS Human protein_coding chr6:24357728 chr6:24357729 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15075 0 0 1 0 1 DCDC2 chr6:24357686 5'GT 24357686 Upstream 44bp 14476 chr19 7618766 7618766 1 + G T LUAD 7618767 + 7618747 7618787 41 TGGGTTCTTAGCAGGCTCTGGGTTGGGTGTGCCCCCACACT TGGGTTCTTAGCAGGCTCTTGGTTGGGTGTGCCCCCACACT < 41bp 0.454764374042552 0.788900220464179 NA NA prediction 0.577800440928358 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7618767 chr19:7618766 nonsynonymous SNV 0.008 4 20 hm7G_associated_SNPs_15077 0 0 1 0 2 PNPLA6 chr19:7618758 3'AG 7618758 Downstream 9bp 14477 chr19 7618766 7618766 1 + G T LUAD 7618767 + 7618747 7618787 41 TGGGTTCTTAGCAGGCTCTGGGTTGGGTGTGCCCCCACACT TGGGTTCTTAGCAGGCTCTTGGTTGGGTGTGCCCCCACACT < 41bp 0.454764374042552 0.788900220464179 NA NA prediction 0.577800440928358 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7618767 chr19:7618766 nonsynonymous SNV 0.008 4 20 hm7G_associated_SNPs_15077 0 0 1 0 2 PNPLA6 chr19:7618761 3'AG 7618761 Downstream 6bp 14478 chr11 61135429 61135429 1 + G T OV 61135430 + 61135410 61135450 41 AACTCCAACAGCTTCATATGGACAGATGGACTTCAAATGCT AACTCCAACAGCTTCATATTGACAGATGGACTTCAAATGCT < 41bp 0.527933708580626 0.816832829305998 NA NA prediction 0.577798241450743 Functional Gain - TMEM138 ENSG00000149483 CDS Human protein_coding chr11:61135430 chr11:61135429 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_15078 0 0 1 0 2 TMEM138 chr11:61135395 3'AG 61135395 Downstream 35bp 14479 chr11 61135429 61135429 1 + G T OV 61135430 + 61135410 61135450 41 AACTCCAACAGCTTCATATGGACAGATGGACTTCAAATGCT AACTCCAACAGCTTCATATTGACAGATGGACTTCAAATGCT < 41bp 0.527933708580626 0.816832829305998 NA NA prediction 0.577798241450743 Functional Gain - TMEM138 ENSG00000149483 CDS Human protein_coding chr11:61135430 chr11:61135429 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_15078 0 0 1 0 2 TMEM138 chr11:61135470 5'GT 61135470 Upstream 42bp 14480 chr4 110789009 110789009 1 + G T ESCA 110789010 + 110788990 110789030 41 CAAAATCATGTCTGCTCTGGGCAGTAATGTTCTACTGCGGT CAAAATCATGTCTGCTCTGTGCAGTAATGTTCTACTGCGGT < 41bp 0.53650445336311 0.825385622408196 NA NA prediction 0.577762338090173 Functional Gain - LRIT3 ENSG00000183423 CDS Human protein_coding chr4:110789010 chr4:110789009 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_15080 0 0 0 0 1 LRIT3 chr4:110789102 5'GT 110789102 Upstream 94bp 14481 chr17 26818574 26818574 1 + G T UCEC 26818575 + 26818555 26818595 41 GTGCTACTCCGCCAGCATCGGGGGCATCGCCACGCTGACTG GTGCTACTCCGCCAGCATCTGGGGCATCGCCACGCTGACTG < 41bp 0.45652321979193 0.788878643304957 NA NA prediction 0.577757286609914 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26818575 chr17:26818574 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15081 0 0 0 0 1 SLC13A2 chr17:26818635 5'GT 26818635 Upstream 62bp 14482 chr2 61333783 61333783 1 + G T LUAD 61333784 + 61333764 61333804 41 ACCATGGGGTCCCAAAACTGGGGAGCTCAATGCTGTGAGTA ACCATGGGGTCCCAAAACTTGGGAGCTCAATGCTGTGAGTA < 41bp 0.476778769530648 0.788875258912217 NA NA prediction 0.577750517824433 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61333784 chr2:61333783 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15082 0 0 0 0 2 KIAA1841 chr2:61333698 3'AG 61333698 Downstream 86bp 14483 chr2 61333783 61333783 1 + G T LUAD 61333784 + 61333764 61333804 41 ACCATGGGGTCCCAAAACTGGGGAGCTCAATGCTGTGAGTA ACCATGGGGTCCCAAAACTTGGGAGCTCAATGCTGTGAGTA < 41bp 0.476778769530648 0.788875258912217 NA NA prediction 0.577750517824433 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61333784 chr2:61333783 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15082 0 0 0 0 2 KIAA1841 chr2:61333797 5'GT 61333797 Upstream 15bp 14484 chr3 50220186 50220186 1 + G T LIHC 50220187 + 50220167 50220207 41 AGGCGCCGCAGAGCCCCGCGGTGTACGCCCGCATCGGGCGC AGGCGCCGCAGAGCCCCGCTGTGTACGCCCGCATCGGGCGC < 41bp 0.459782482260743 0.78886549228143 NA NA prediction 0.57773098456286 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220187 chr3:50220186 synonymous SNV . 0 20 hm7G_associated_SNPs_15084 0 0 0 0 1 SEMA3F chr3:50220216 5'GT 50220216 Upstream 31bp 14485 chr3 38138133 38138133 1 + G T STAD 38138134 + 38138114 38138154 41 CCTGGAAATCGAGGTGAAAGGCTCAGTAGAACCTTTCCAGG CCTGGAAATCGAGGTGAAATGCTCAGTAGAACCTTTCCAGG < 41bp 0.462482410391744 0.788845473638496 NA NA prediction 0.577690947276991 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38138134 chr3:38138133 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15086 0 0 0 0 1 DLEC1 chr3:38138228 5'GT 38138228 Upstream 96bp 14486 chr7 55468969 55468969 1 + G T CESC 55468970 + 55468950 55468990 41 GCACCGGAAGCAGTACGTTGGAGCAGCCCATGGCATGGCTG GCACCGGAAGCAGTACGTTTGAGCAGCCCATGGCATGGCTG < 41bp 0.55838620710988 0.847215837726053 NA NA prediction 0.577659261232346 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55468970 chr7:55468969 stopgain 0.996 1 20 hm7G_associated_SNPs_15090 0 0 1 0 1 LANCL2 chr7:55469013 5'GT 55469013 Upstream 45bp 14487 chr4 89385092 89385092 1 + G T BLCA 89385093 + 89385073 89385113 41 AGCTAAGACCCTGTTTGGTGGCTGAGCTTGTTGGGTATAGA AGCTAAGACCCTGTTTGGTTGCTGAGCTTGTTGGGTATAGA < 41bp 0.552681994339488 0.841508607175938 NA NA prediction 0.577653225672901 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89385093 chr4:89385092 synonymous SNV . 0 20 hm7G_associated_SNPs_15091 0 0 0 0 2 HERC5 chr4:89385006 3'AG 89385006 Downstream 87bp 14488 chr4 89385092 89385092 1 + G T BLCA 89385093 + 89385073 89385113 41 AGCTAAGACCCTGTTTGGTGGCTGAGCTTGTTGGGTATAGA AGCTAAGACCCTGTTTGGTTGCTGAGCTTGTTGGGTATAGA < 41bp 0.552681994339488 0.841508607175938 NA NA prediction 0.577653225672901 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89385093 chr4:89385092 synonymous SNV . 0 20 hm7G_associated_SNPs_15091 0 0 0 0 2 HERC5 chr4:89385136 5'GT 89385136 Upstream 45bp 14489 chr19 10561553 10561553 1 + G T COAD 10561554 + 10561534 10561574 41 ACTCTGGAGGAGCTGGACTGGTGTCTGGAGCAGCTGGAGAC ACTCTGGAGGAGCTGGACTTGTGTCTGGAGCAGCTGGAGAC < 41bp 0.461988126989142 0.788805357948838 NA NA prediction 0.577610715897677 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561554 chr19:10561553 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15092 0 0 1 0 2 PDE4A chr19:10561505 3'AG 10561505 Downstream 49bp 14490 chr19 10561553 10561553 1 + G T COAD 10561554 + 10561534 10561574 41 ACTCTGGAGGAGCTGGACTGGTGTCTGGAGCAGCTGGAGAC ACTCTGGAGGAGCTGGACTTGTGTCTGGAGCAGCTGGAGAC < 41bp 0.461988126989142 0.788805357948838 NA NA prediction 0.577610715897677 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10561554 chr19:10561553 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15092 0 0 1 0 2 PDE4A chr19:10561617 5'GT 10561617 Upstream 65bp 14491 chr1 29602234 29602234 1 + G T LUAD 29602235 + 29602215 29602255 41 ACCCTGAGGGGCGCAAAGAGGGCAAGGAGGTCACTTTCCAG ACCCTGAGGGGCGCAAAGATGGCAAGGAGGTCACTTTCCAG < 41bp 0.460097141456151 0.788793833753489 NA NA prediction 0.577587667506978 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29602235 chr1:29602234 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15093 0 0 1 0 1 PTPRU chr1:29602268 5'GT 29602268 Upstream 35bp 14492 chr6 43096778 43096778 1 + G T LUAD 43096779 + 43096759 43096799 41 GATGCACTGCAGGGGCGCCGGGCGCTGCTTCGCTGTGAGGT GATGCACTGCAGGGGCGCCTGGCGCTGCTTCGCTGTGAGGT < 41bp 0.456543371921018 0.788784629331647 NA NA prediction 0.577569258663293 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096779 chr6:43096778 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_15095 0 0 1 0 1 PTK7 chr6:43096715 3'AG 43096715 Downstream 64bp 14493 chr11 71949104 71949104 1 + G T BLCA 71949105 + 71949085 71949125 41 GGCTCCGTGCCTGCAGGGCGGGCGGGCCAGCGGGCTGGGCG GGCTCCGTGCCTGCAGGGCTGGCGGGCCAGCGGGCTGGGCG < 41bp 0.553208525258499 0.841980001171264 NA NA prediction 0.577542951825531 Functional Gain - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71949105 chr11:71949104 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15096 0 0 1 0 1 INPPL1 chr11:71949086 3'AG 71949086 Downstream 19bp 14494 chr3 17109488 17109488 1 + G T COAD 17109489 + 17109469 17109509 41 TGCACAGCATAGGCACCAAGGAAGGTTTGAAGGAAAGAAAA TGCACAGCATAGGCACCAATGAAGGTTTGAAGGAAAGAAAA < 41bp 0.475480477891061 0.788770435110569 NA NA prediction 0.577540870221138 Functional Gain - PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17109489 chr3:17109488 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_15097 0 0 0 0 2 PLCL2 chr3:17109448 3'AG 17109448 Downstream 41bp 14495 chr3 17109488 17109488 1 + G T COAD 17109489 + 17109469 17109509 41 TGCACAGCATAGGCACCAAGGAAGGTTTGAAGGAAAGAAAA TGCACAGCATAGGCACCAATGAAGGTTTGAAGGAAAGAAAA < 41bp 0.475480477891061 0.788770435110569 NA NA prediction 0.577540870221138 Functional Gain - PLCL2 ENSG00000154822 CDS Human protein_coding chr3:17109489 chr3:17109488 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_15097 0 0 0 0 2 PLCL2 chr3:17109557 5'GT 17109557 Upstream 70bp 14496 chr15 81582861 81582861 1 + G T UCEC 81582862 + 81582842 81582882 41 ACCAAGTTTGGAAAGGAGAGGCATCAGTGGAGTCTGGAAGG ACCAAGTTTGGAAAGGAGATGCATCAGTGGAGTCTGGAAGG < 41bp 0.508010346935673 0.796763302834118 NA NA prediction 0.57750591179689 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81582862 chr15:81582861 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15099 0 0 0 0 2 IL16 chr15:81582794 3'AG 81582794 Downstream 68bp 14497 chr15 81582861 81582861 1 + G T UCEC 81582862 + 81582842 81582882 41 ACCAAGTTTGGAAAGGAGAGGCATCAGTGGAGTCTGGAAGG ACCAAGTTTGGAAAGGAGATGCATCAGTGGAGTCTGGAAGG < 41bp 0.508010346935673 0.796763302834118 NA NA prediction 0.57750591179689 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81582862 chr15:81582861 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15099 0 0 0 0 2 IL16 chr15:81582881 5'GT 81582881 Upstream 21bp 14498 chr17 48538648 48538648 1 + G T UCEC 48538649 + 48538629 48538669 41 GAGCATTGGCCTCTGCAAAGGTGACCGGCTGGGCATGTGGG GAGCATTGGCCTCTGCAAATGTGACCGGCTGGGCATGTGGG < 41bp 0.549574919493001 0.838322091721049 NA NA prediction 0.577494344456096 Functional Gain - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48538649 chr17:48538648 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_15101 0 0 1 0 2 ACSF2 chr17:48538603 3'AG 48538603 Downstream 46bp 14499 chr17 48538648 48538648 1 + G T UCEC 48538649 + 48538629 48538669 41 GAGCATTGGCCTCTGCAAAGGTGACCGGCTGGGCATGTGGG GAGCATTGGCCTCTGCAAATGTGACCGGCTGGGCATGTGGG < 41bp 0.549574919493001 0.838322091721049 NA NA prediction 0.577494344456096 Functional Gain - ACSF2 ENSG00000167107 CDS Human protein_coding chr17:48538649 chr17:48538648 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_15101 0 0 1 0 2 ACSF2 chr17:48538731 5'GT 48538731 Upstream 84bp 14500 chr19 42858007 42858007 1 + G T LUSC 42858008 + 42857988 42858028 41 GTGGCACTGGGCTCACGCCGGGTCGGGGGGCTGCTGCCTCC GTGGCACTGGGCTCACGCCTGGTCGGGGGGCTGCTGCCTCC < 41bp 0.465796331367897 0.788720154215127 NA NA prediction 0.577440308430254 Functional Gain - MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42858008 chr19:42858007 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_15103 0 0 0 0 1 MEGF8 chr19:42857927 3'AG 42857927 Downstream 81bp 14501 chr21 17163920 17163920 1 + G T LUSC 17163921 + 17163901 17163941 41 CTTATGATAGAAAAAGACAGGACAAAGCTCCCGTTGGGCTA CTTATGATAGAAAAAGACATGACAAAGCTCCCGTTGGGCTA < 41bp 0.535724375487912 0.824437047715906 NA NA prediction 0.577425344455989 Functional Gain - USP25 ENSG00000155313 CDS Human protein_coding chr21:17163921 chr21:17163920 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_15105 0 0 1 0 1 USP25 chr21:17163983 5'GT 17163983 Upstream 64bp 14502 chr19 42231220 42231220 1 + G T SKCM 42231221 + 42231201 42231241 41 ATGATTGGAGTGCTGGTTGGGGTTGCTCTGATATAGCAGCC ATGATTGGAGTGCTGGTTGTGGTTGCTCTGATATAGCAGCC < 41bp 0.482956463092559 0.788696151713881 NA NA prediction 0.577392303427763 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42231221 chr19:42231220 nonsynonymous SNV 0.755 1 20 hm7G_associated_SNPs_15110 0 0 0 0 1 CEACAM5 chr19:42231154 3'AG 42231154 Downstream 67bp 14503 chr3 148880518 148880518 1 + G T LIHC 148880519 + 148880499 148880539 41 ATACAATTCCTCAGCTCTTGGTAGACTTTTGGGAAGCTCAG ATACAATTCCTCAGCTCTTTGTAGACTTTTGGGAAGCTCAG < 41bp 0.536224108662123 0.824919371772063 NA NA prediction 0.577390526219881 Functional Gain - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148880519 chr3:148880518 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_15111 0 0 0 2 1 HPS3 chr3:148880477 3'AG 148880477 Downstream 42bp 14504 chr6 97052659 97052659 1 + G T UCEC 97052660 + 97052640 97052680 41 AGACCGGCACTGGCATGAAGGATGCTTCAAGTGCACCAAAT AGACCGGCACTGGCATGAATGATGCTTCAAGTGCACCAAAT < 41bp 0.524301222322091 0.812984990660407 NA NA prediction 0.577367536676633 Functional Gain - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97052660 chr6:97052659 stopgain 1.000 0 20 hm7G_associated_SNPs_15112 0 0 0 0 1 FHL5 chr6:97052626 3'AG 97052626 Downstream 34bp 14505 chr19 20215134 20215134 1 + G T LUSC 20215135 + 20215115 20215155 41 CACAGCAGAATTTATATAGGGATGTGATGTTAGAGAACTAC CACAGCAGAATTTATATAGTGATGTGATGTTAGAGAACTAC < 41bp 0.479593872443787 0.788664883507334 NA NA prediction 0.577329767014669 Functional Gain - ZNF90 ENSG00000213988 CDS Human protein_coding chr19:20215135 chr19:20215134 nonsynonymous SNV 0.341 1 20 hm7G_associated_SNPs_15114 0 0 0 0 2 ZNF90 chr19:20215048 3'AG 20215048 Downstream 87bp 14506 chr19 20215134 20215134 1 + G T LUSC 20215135 + 20215115 20215155 41 CACAGCAGAATTTATATAGGGATGTGATGTTAGAGAACTAC CACAGCAGAATTTATATAGTGATGTGATGTTAGAGAACTAC < 41bp 0.479593872443787 0.788664883507334 NA NA prediction 0.577329767014669 Functional Gain - ZNF90 ENSG00000213988 CDS Human protein_coding chr19:20215135 chr19:20215134 nonsynonymous SNV 0.341 1 20 hm7G_associated_SNPs_15114 0 0 0 0 2 ZNF90 chr19:20215174 5'GT 20215174 Upstream 41bp 14507 chr7 39730128 39730128 1 + G T LUAD 39730129 + 39730109 39730149 41 CTACTTCCGAAGTGGGGAGGGGTTCCTCTGTGTTTTCTCTA CTACTTCCGAAGTGGGGAGTGGTTCCTCTGTGTTTTCTCTA < 41bp 0.548150765854894 0.836812241304682 NA NA prediction 0.577322950899577 Functional Gain - RALA ENSG00000006451 CDS Human protein_coding chr7:39730129 chr7:39730128 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_15115 0 0 1 0 1 RALA chr7:39730189 5'GT 39730189 Upstream 62bp 14508 chr15 42136730 42136730 1 + G T BLCA 42136731 + 42136711 42136751 41 GCAATGACTTCCCTGTATGGGCAGCTGGCTGGCCTGAAGGA GCAATGACTTCCCTGTATGTGCAGCTGGCTGGCCTGAAGGA < 41bp 0.559729681351688 0.848377559023087 NA NA prediction 0.577295755342798 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42136731 chr15:42136730 nonsynonymous SNV 0.907 4 20 hm7G_associated_SNPs_15117 0 0 1 0 2 JMJD7-PLA2G4B;PLA2G4B chr15:42136669 3'AG 42136669 Downstream 62bp 14509 chr15 42136730 42136730 1 + G T BLCA 42136731 + 42136711 42136751 41 GCAATGACTTCCCTGTATGGGCAGCTGGCTGGCCTGAAGGA GCAATGACTTCCCTGTATGTGCAGCTGGCTGGCCTGAAGGA < 41bp 0.559729681351688 0.848377559023087 NA NA prediction 0.577295755342798 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42136731 chr15:42136730 nonsynonymous SNV 0.907 4 20 hm7G_associated_SNPs_15117 0 0 1 0 2 JMJD7-PLA2G4B;PLA2G4B chr15:42136805 5'GT 42136805 Upstream 76bp 14510 chr2 241530258 241530258 1 + G T LUAD 241530259 + 241530239 241530279 41 CTCCGGGACAGCCGAGCTGGGCCGACCAGGAGTACCGGGGC CTCCGGGACAGCCGAGCTGTGCCGACCAGGAGTACCGGGGC < 41bp 0.556736285471894 0.845383123557567 NA NA prediction 0.577293676171345 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241530259 chr2:241530258 nonsynonymous SNV 0.924 5 20 hm7G_associated_SNPs_15118 0 0 1 0 1 CAPN10 chr2:241530232 3'AG 241530232 Downstream 27bp 14511 chr7 105644971 105644971 1 + G T COAD 105644972 + 105644952 105644992 41 ACAATCCAAGTGGCCCAAAGGATAGACCGAGATGCAGGTGA ACAATCCAAGTGGCCCAAATGATAGACCGAGATGCAGGTGA < 41bp 0.472675186912612 0.788620640086325 NA NA prediction 0.57724128017265 Functional Gain - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105644972 chr7:105644971 nonsynonymous SNV 0.774 0 20 hm7G_associated_SNPs_15119 0 0 0 0 1 CDHR3 chr7:105644944 3'AG 105644944 Downstream 28bp 14512 chr1 20915760 20915760 1 + G T UCEC 20915761 + 20915741 20915781 41 CTGCCCTGCTCACCCAGGAGGGGAGAATCTTCAAAGGTAAA CTGCCCTGCTCACCCAGGATGGGAGAATCTTCAAAGGTAAA < 41bp 0.526634159721065 0.815250683859797 NA NA prediction 0.577233048277464 Functional Gain - CDA ENSG00000158825 CDS Human protein_coding chr1:20915761 chr1:20915760 nonsynonymous SNV 0.244 0 20 hm7G_associated_SNPs_15120 0 0 0 0 1 CDA chr1:20915776 5'GT 20915776 Upstream 17bp 14513 chr15 69011527 69011527 1 + G T STAD 69011528 + 69011508 69011548 41 ACCCAATGACACCAGGCACGGAGCCAGCACTGACCCCGGAT ACCCAATGACACCAGGCACTGAGCCAGCACTGACCCCGGAT < 41bp 0.560186084203222 0.84879892371857 NA NA prediction 0.577225679030695 Functional Gain - CORO2B ENSG00000103647 CDS Human protein_coding chr15:69011528 chr15:69011527 synonymous SNV . 0 20 hm7G_associated_SNPs_15121 0 0 0 0 2 CORO2B chr15:69011483 3'AG 69011483 Downstream 45bp 14514 chr15 69011527 69011527 1 + G T STAD 69011528 + 69011508 69011548 41 ACCCAATGACACCAGGCACGGAGCCAGCACTGACCCCGGAT ACCCAATGACACCAGGCACTGAGCCAGCACTGACCCCGGAT < 41bp 0.560186084203222 0.84879892371857 NA NA prediction 0.577225679030695 Functional Gain - CORO2B ENSG00000103647 CDS Human protein_coding chr15:69011528 chr15:69011527 synonymous SNV . 0 20 hm7G_associated_SNPs_15121 0 0 0 0 2 CORO2B chr15:69011573 5'GT 69011573 Upstream 47bp 14515 chr6 2900751 2900751 1 + G T COAD 2900752 + 2900732 2900772 41 GGCAGAGGAGATGCTCACAGGAGAACAGAACACGTTGTGCG GGCAGAGGAGATGCTCACATGAGAACAGAACACGTTGTGCG < 41bp 0.515455408252352 0.804063810638097 NA NA prediction 0.57721680477149 Functional Gain - SERPINB9 ENSG00000170542 CDS Human protein_coding chr6:2900752 chr6:2900751 nonsynonymous SNV 0.033 5 20 hm7G_associated_SNPs_15122 0 0 0 0 1 SERPINB9 chr6:2900717 3'AG 2900717 Downstream 35bp 14516 chr15 64717779 64717779 1 + G T LUAD 64717780 + 64717760 64717800 41 ATCCGTCAGGTTGTCTTCTGGGCTGTGTGGACCTAATTGAC ATCCGTCAGGTTGTCTTCTTGGCTGTGTGGACCTAATTGAC < 41bp 0.543365664105029 0.831961462332133 NA NA prediction 0.577191596454208 Functional Gain - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64717780 chr15:64717779 synonymous SNV . 0 20 hm7G_associated_SNPs_15123 0 0 1 0 2 TRIP4 chr15:64717739 3'AG 64717739 Downstream 41bp 14517 chr15 64717779 64717779 1 + G T LUAD 64717780 + 64717760 64717800 41 ATCCGTCAGGTTGTCTTCTGGGCTGTGTGGACCTAATTGAC ATCCGTCAGGTTGTCTTCTTGGCTGTGTGGACCTAATTGAC < 41bp 0.543365664105029 0.831961462332133 NA NA prediction 0.577191596454208 Functional Gain - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64717780 chr15:64717779 synonymous SNV . 0 20 hm7G_associated_SNPs_15123 0 0 1 0 2 TRIP4 chr15:64717830 5'GT 64717830 Upstream 52bp 14518 chr3 197500362 197500362 1 + G T UCEC 197500363 + 197500343 197500383 41 AACTTTTCTTTTCAGAAGAGGCCTGAAGGTATTTAAAAACT AACTTTTCTTTTCAGAAGATGCCTGAAGGTATTTAAAAACT < 41bp 0.498889861386972 0.788587600538734 NA NA prediction 0.577175201077468 Functional Gain - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197500363 chr3:197500362 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15124 0 0 1 0 2 FYTTD1 chr3:197500274 3'AG 197500274 Downstream 89bp 14519 chr3 197500362 197500362 1 + G T UCEC 197500363 + 197500343 197500383 41 AACTTTTCTTTTCAGAAGAGGCCTGAAGGTATTTAAAAACT AACTTTTCTTTTCAGAAGATGCCTGAAGGTATTTAAAAACT < 41bp 0.498889861386972 0.788587600538734 NA NA prediction 0.577175201077468 Functional Gain - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197500363 chr3:197500362 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15124 0 0 1 0 2 FYTTD1 chr3:197500370 5'GT 197500370 Upstream 9bp 14520 chr12 56531315 56531315 1 + G T UCEC 56531316 + 56531296 56531336 41 TCCATGTATTAGAGGCCCAGGACCTGATTGCCAAAGACCGT TCCATGTATTAGAGGCCCATGACCTGATTGCCAAAGACCGT < 41bp 0.557344417763731 0.845924599794246 NA NA prediction 0.577160364061031 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531316 chr12:56531315 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15125 0 0 1 0 1 ESYT1 chr12:56531283 3'AG 56531283 Downstream 33bp 14521 chr3 167508350 167508350 1 + G T LUSC 167508351 + 167508331 167508371 41 TCAGTCAAAATGTAGCCGTGGCCAACTACATCAATAAGTGG TCAGTCAAAATGTAGCCGTTGCCAACTACATCAATAAGTGG < 41bp 0.475583735689363 0.788576207392698 NA NA prediction 0.577152414785395 Functional Gain - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167508351 chr3:167508350 synonymous SNV . 0 20 hm7G_associated_SNPs_15126 0 0 0 0 1 SERPINI1 chr3:167508390 5'GT 167508390 Upstream 41bp 14522 chr2 233322576 233322576 1 + G T HNSC 233322577 + 233322557 233322597 41 AGTCTGTGACCCATCTCATGGGTAATGACCCCCTTCCTGCC AGTCTGTGACCCATCTCATTGGTAATGACCCCCTTCCTGCC < 41bp 0.545937421698114 0.834510245782466 NA NA prediction 0.577145648168704 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233322577 chr2:233322576 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_15127 0 0 0 0 1 ALPI chr2:233322577 5'GT 233322577 Upstream 2bp 14523 chr18 9886653 9886653 1 + G T LUSC 9886654 + 9886634 9886674 41 AGTTCTTGGAAATAGCCCAGGCCAAAGAGAAGGCCTTTCTC AGTTCTTGGAAATAGCCCATGCCAAAGAGAAGGCCTTTCTC < 41bp 0.52321744563087 0.811764590196693 NA NA prediction 0.577094289131648 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9886654 chr18:9886653 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_15130 0 0 0 0 1 TXNDC2 chr18:9886586 3'AG 9886586 Downstream 68bp 14524 chr19 37733454 37733454 1 + G T LGG 37733455 + 37733435 37733475 41 ATGCCAGAGGGAGATAATGGGACTTACAAAGCATGGCCTTG ATGCCAGAGGGAGATAATGTGACTTACAAAGCATGGCCTTG < 41bp 0.493279132780914 0.788546228368679 NA NA prediction 0.577092456737358 Functional Gain - ZNF383 ENSG00000188283 CDS Human protein_coding chr19:37733455 chr19:37733454 stopgain 0.998 0 20 hm7G_associated_SNPs_15131 0 0 1 0 1 ZNF383 chr19:37733371 3'AG 37733371 Downstream 84bp 14525 chr8 75757625 75757625 1 + G T OV 75757626 + 75757606 75757646 41 TATTTTCACAGATGGTTTGGGCCACTTCCAATCGGATAGGA TATTTTCACAGATGGTTTGTGCCACTTCCAATCGGATAGGA < 41bp 0.505182184562319 0.793725616198751 NA NA prediction 0.577086863272864 Functional Gain - PI15 ENSG00000137558 CDS Human protein_coding chr8:75757626 chr8:75757625 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15132 0 0 0 0 1 PI15 chr8:75757617 3'AG 75757617 Downstream 9bp 14526 chr2 27852006 27852006 1 + G T STAD 27852007 + 27851987 27852027 41 GTCTGTTGGTGTTGGGAATGGCGGGATCCGGGAAAACCACT GTCTGTTGGTGTTGGGAATTGCGGGATCCGGGAAAACCACT < 41bp 0.535242544806027 0.823777986524652 NA NA prediction 0.577070883437251 Functional Gain - GPN1 ENSG00000198522 CDS Human protein_coding chr2:27852007 chr2:27852006 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15133 0 0 1 0 1 GPN1 chr2:27852036 5'GT 27852036 Upstream 31bp 14527 chr19 36276380 36276380 1 + G T LUAD 36276381 + 36276361 36276401 41 CTGTCATCGCAGGCCAGCGGGGCTGGTGAGCAAGGCGGGCA CTGTCATCGCAGGCCAGCGTGGCTGGTGAGCAAGGCGGGCA < 41bp 0.562932739614992 0.851460978046132 NA NA prediction 0.57705647686228 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276381 chr19:36276380 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_15134 0 0 1 0 2 ARHGAP33 chr19:36276311 3'AG 36276311 Downstream 70bp 14528 chr19 36276380 36276380 1 + G T LUAD 36276381 + 36276361 36276401 41 CTGTCATCGCAGGCCAGCGGGGCTGGTGAGCAAGGCGGGCA CTGTCATCGCAGGCCAGCGTGGCTGGTGAGCAAGGCGGGCA < 41bp 0.562932739614992 0.851460978046132 NA NA prediction 0.57705647686228 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36276381 chr19:36276380 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_15134 0 0 1 0 2 ARHGAP33 chr19:36276385 5'GT 36276385 Upstream 6bp 14529 chr1 180158700 180158700 1 + G T LUAD 180158701 + 180158681 180158721 41 CCACAGTATTTCCCTGGCCGGCCCTTAGTCCAGAACTTCCT CCACAGTATTTCCCTGGCCTGCCCTTAGTCCAGAACTTCCT < 41bp 0.458024178060994 0.788511078046143 NA NA prediction 0.577022156092286 Functional Gain - QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180158701 chr1:180158700 nonsynonymous SNV 0.302 2 20 hm7G_associated_SNPs_15135 0 0 1 0 1 QSOX1 chr1:180158687 3'AG 180158687 Downstream 14bp 14530 chr1 160144369 160144369 1 + G T UCEC 160144370 + 160144350 160144390 41 TCTGTCTGGACTTCCTCAGGGAGCCGTTGTGGCCGTGACAG TCTGTCTGGACTTCCTCAGTGAGCCGTTGTGGCCGTGACAG < 41bp 0.470758660554013 0.788501276319427 NA NA prediction 0.577002552638854 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160144370 chr1:160144369 stopgain 0.983 1 20 hm7G_associated_SNPs_15136 0 0 0 0 1 ATP1A4 chr1:160144369 3'AG 160144369 Downstream 1bp 14531 chr20 62871203 62871203 1 + G T HNSC 62871204 + 62871184 62871224 41 CCTGTTTCTGGAGCTGTCCGGCCTGAGCCAGGCCCTCATCC CCTGTTTCTGGAGCTGTCCTGCCTGAGCCAGGCCCTCATCC < 41bp 0.557002395582507 0.845492587786331 NA NA prediction 0.576980384407648 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62871204 chr20:62871203 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_15138 0 0 0 0 2 MYT1 chr20:62871113 3'AG 62871113 Downstream 91bp 14532 chr20 62871203 62871203 1 + G T HNSC 62871204 + 62871184 62871224 41 CCTGTTTCTGGAGCTGTCCGGCCTGAGCCAGGCCCTCATCC CCTGTTTCTGGAGCTGTCCTGCCTGAGCCAGGCCCTCATCC < 41bp 0.557002395582507 0.845492587786331 NA NA prediction 0.576980384407648 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62871204 chr20:62871203 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_15138 0 0 0 0 2 MYT1 chr20:62871256 5'GT 62871256 Upstream 54bp 14533 chr21 45858950 45858950 1 + G T LUSC 45858951 + 45858931 45858971 41 CCGTCCTCTGTCTGTCCAGGGCTCCCGGGAGCCAGGGGAGA CCGTCCTCTGTCTGTCCAGTGCTCCCGGGAGCCAGGGGAGA < 41bp 0.464813435017088 0.788458457059372 NA NA prediction 0.576916914118743 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45858951 chr21:45858950 nonsynonymous SNV 0.575 5 20 hm7G_associated_SNPs_15140 0 0 0 0 1 TRPM2 chr21:45858950 3'AG 45858950 Downstream 1bp 14534 chr20 31877739 31877739 1 + G T HNSC 31877740 + 31877720 31877760 41 AGCTGCAGGTGAAGCCCTCGGCCAATGACCAGGAGCTGCTA AGCTGCAGGTGAAGCCCTCTGCCAATGACCAGGAGCTGCTA < 41bp 0.561989907442988 0.850417288290589 NA NA prediction 0.576854761695202 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877740 chr20:31877739 synonymous SNV . 0 20 hm7G_associated_SNPs_15142 0 0 0 0 2 BPIFB1 chr20:31877691 3'AG 31877691 Downstream 49bp 14535 chr20 31877739 31877739 1 + G T HNSC 31877740 + 31877720 31877760 41 AGCTGCAGGTGAAGCCCTCGGCCAATGACCAGGAGCTGCTA AGCTGCAGGTGAAGCCCTCTGCCAATGACCAGGAGCTGCTA < 41bp 0.561989907442988 0.850417288290589 NA NA prediction 0.576854761695202 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877740 chr20:31877739 synonymous SNV . 0 20 hm7G_associated_SNPs_15142 0 0 0 0 2 BPIFB1 chr20:31877798 5'GT 31877798 Upstream 60bp 14536 chr20 55012273 55012273 1 + G T LUAD 55012274 + 55012254 55012294 41 CTGACTGCTCTGACGAGCTGGCTTTCAGCAGAGGGGACATC CTGACTGCTCTGACGAGCTTGCTTTCAGCAGAGGGGACATC < 41bp 0.56502729245097 0.853450204306558 NA NA prediction 0.576845823711176 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012274 chr20:55012273 synonymous SNV . 0 20 hm7G_associated_SNPs_15143 0 0 0 0 1 CASS4 chr20:55012220 3'AG 55012220 Downstream 54bp 14537 chr8 27970583 27970583 1 + G T UCEC 27970584 + 27970564 27970604 41 AAGTGGAGTTTATTGTGATGGGTGGAACGTTTATGGCCCTT AAGTGGAGTTTATTGTGATTGGTGGAACGTTTATGGCCCTT < 41bp 0.543693257398592 0.832112379943064 NA NA prediction 0.576838245088945 Functional Gain - ELP3 ENSG00000134014 CDS Human protein_coding chr8:27970584 chr8:27970583 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15144 0 0 1 0 1 ELP3 chr8:27970536 3'AG 27970536 Downstream 48bp 14538 chr1 117552534 117552534 1 + G T UCEC 117552535 + 117552515 117552555 41 ACCACTGTTTAGAGCTGAAGGTTACCCAGTCAGCATTGGCT ACCACTGTTTAGAGCTGAATGTTACCCAGTCAGCATTGGCT < 41bp 0.472302544412798 0.788408243114017 NA NA prediction 0.576816486228033 Functional Gain - CD101 ENSG00000134256 CDS Human protein_coding chr1:117552535 chr1:117552534 nonsynonymous SNV 0.409 5 20 hm7G_associated_SNPs_15145 0 0 0 0 1 CD101 chr1:117552472 3'AG 117552472 Downstream 63bp 14539 chr4 1348598 1348598 1 + G T THCA 1348599 + 1348579 1348619 41 GACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGT GACACACTCAAGCTCATCCTGAACAAGTTCCTGCCGGCTGT < 41bp 0.460729359621612 0.788397392169971 NA NA prediction 0.576794784339943 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1348599 chr4:1348598 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_15146 0 0 1 0 2 UVSSA chr4:1348523 3'AG 1348523 Downstream 76bp 14540 chr4 1348598 1348598 1 + G T THCA 1348599 + 1348579 1348619 41 GACACACTCAAGCTCATCCGGAACAAGTTCCTGCCGGCTGT GACACACTCAAGCTCATCCTGAACAAGTTCCTGCCGGCTGT < 41bp 0.460729359621612 0.788397392169971 NA NA prediction 0.576794784339943 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1348599 chr4:1348598 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_15146 0 0 1 0 2 UVSSA chr4:1348635 5'GT 1348635 Upstream 38bp 14541 chr3 134251670 134251670 1 + G T LUAD 134251671 + 134251651 134251691 41 TTCAGAAAAAGCAAATGAGGGAATTCAGAGGAAATACCAAA TTCAGAAAAAGCAAATGAGTGAATTCAGAGGAAATACCAAA < 41bp 0.542921144677593 0.831316062332131 NA NA prediction 0.576789835309075 Functional Gain - CEP63 ENSG00000182923 CDS Human protein_coding chr3:134251671 chr3:134251670 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_15147 0 0 1 0 2 CEP63 chr3:134251620 3'AG 134251620 Downstream 51bp 14542 chr3 134251670 134251670 1 + G T LUAD 134251671 + 134251651 134251691 41 TTCAGAAAAAGCAAATGAGGGAATTCAGAGGAAATACCAAA TTCAGAAAAAGCAAATGAGTGAATTCAGAGGAAATACCAAA < 41bp 0.542921144677593 0.831316062332131 NA NA prediction 0.576789835309075 Functional Gain - CEP63 ENSG00000182923 CDS Human protein_coding chr3:134251671 chr3:134251670 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_15147 0 0 1 0 2 CEP63 chr3:134251742 5'GT 134251742 Upstream 73bp 14543 chr14 60977871 60977871 1 + G T UCEC 60977872 + 60977852 60977892 41 AGGGCGACGGCACGCCAGAGGTGCTGGGCGTCGCCACCAGC AGGGCGACGGCACGCCAGATGTGCTGGGCGTCGCCACCAGC < 41bp 0.52220735786634 0.810563037422567 NA NA prediction 0.576711359112455 Functional Gain - SIX6 ENSG00000184302 CDS Human protein_coding chr14:60977872 chr14:60977871 nonsynonymous SNV 0.858 2 20 hm7G_associated_SNPs_15152 0 0 0 0 1 SIX6 chr14:60977802 3'AG 60977802 Downstream 70bp 14544 chr19 1535114 1535114 1 + G T CESC 1535115 + 1535095 1535135 41 TGCTGAGTGGCGAGGGTGAGGGTTTGCAGCTCACCCTCTGG TGCTGAGTGGCGAGGGTGATGGTTTGCAGCTCACCCTCTGG < 41bp 0.469419550888857 0.788348959452445 NA NA prediction 0.576697918904889 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1535115 chr19:1535114 nonsynonymous SNV 0.062 1 20 hm7G_associated_SNPs_15153 0 0 0 0 1 PLK5 chr19:1535064 3'AG 1535064 Downstream 51bp 14545 chr15 90245192 90245192 1 + G T LUAD 90245193 + 90245173 90245213 41 CTTCTGTTTGACCAGTCTTGGGAAATTATTGAAGAGAGAAA CTTCTGTTTGACCAGTCTTTGGAAATTATTGAAGAGAGAAA < 41bp 0.466298677347286 0.788331970649385 NA NA prediction 0.57666394129877 Functional Gain - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90245193 chr15:90245192 nonsynonymous SNV 0.352 3 20 hm7G_associated_SNPs_15156 0 0 0 0 1 WDR93 chr15:90245280 5'GT 90245280 Upstream 89bp 14546 chr11 62549632 62549632 1 + G T UCEC 62549633 + 62549613 62549653 41 AACTGCACCGGCTGCTGCAGGTGGCACGGAGCCTATTTCGT AACTGCACCGGCTGCTGCATGTGGCACGGAGCCTATTTCGT < 41bp 0.546098436721927 0.83440761857136 NA NA prediction 0.576618363698866 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62549633 chr11:62549632 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_15159 0 0 0 0 1 TAF6L chr11:62549585 3'AG 62549585 Downstream 48bp 14547 chr10 70432749 70432749 1 + G T LUSC 70432750 + 70432730 70432770 41 CTTTAATGGCTGTAAGTTTGGTAGAAGCCCAAGCCCCAGAA CTTTAATGGCTGTAAGTTTTGTAGAAGCCCAAGCCCCAGAA < 41bp 0.516214105434694 0.804507230610749 NA NA prediction 0.576586250352111 Functional Gain - TET1 ENSG00000138336 CDS Human protein_coding chr10:70432750 chr10:70432749 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15163 0 0 0 0 1 TET1 chr10:70432802 5'GT 70432802 Upstream 54bp 14548 chr4 74357676 74357676 1 + G T BLCA 74357677 + 74357657 74357697 41 AAAGAAAATACCAGAGCGCGGCCAGTGCATAATTAACTCAA AAAGAAAATACCAGAGCGCTGCCAGTGCATAATTAACTCAA < 41bp 0.491176063151882 0.78828740420517 NA NA prediction 0.576574808410341 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74357677 chr4:74357676 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_15164 0 0 0 0 1 AFM chr4:74357589 3'AG 74357589 Downstream 88bp 14549 chr8 22105494 22105494 1 + G T LUAD 22105495 + 22105475 22105515 41 TCACTCCATCTTTGAGCAGGGCCCAGCTGAAATGATGAAGA TCACTCCATCTTTGAGCAGTGCCCAGCTGAAATGATGAAGA < 41bp 0.549049111237941 0.837315026731243 NA NA prediction 0.576531830986603 Functional Gain - POLR3D ENSG00000168495 CDS Human protein_coding chr8:22105495 chr8:22105494 nonsynonymous SNV 0.965 4 20 hm7G_associated_SNPs_15166 0 0 1 0 1 POLR3D chr8:22105521 5'GT 22105521 Upstream 28bp 14550 chr6 44148528 44148528 1 + G T ESCA 44148529 + 44148509 44148549 41 CTCCAGAGGCTGCTCAACAGGATGGCCATCAAATGTGAGTC CTCCAGAGGCTGCTCAACATGATGGCCATCAAATGTGAGTC < 41bp 0.542423340038053 0.830680670806076 NA NA prediction 0.576514661536045 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148529 chr6:44148528 nonsynonymous SNV 0.153 2 20 hm7G_associated_SNPs_15169 0 0 0 0 2 CAPN11 chr6:44148485 3'AG 44148485 Downstream 44bp 14551 chr6 44148528 44148528 1 + G T ESCA 44148529 + 44148509 44148549 41 CTCCAGAGGCTGCTCAACAGGATGGCCATCAAATGTGAGTC CTCCAGAGGCTGCTCAACATGATGGCCATCAAATGTGAGTC < 41bp 0.542423340038053 0.830680670806076 NA NA prediction 0.576514661536045 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44148529 chr6:44148528 nonsynonymous SNV 0.153 2 20 hm7G_associated_SNPs_15169 0 0 0 0 2 CAPN11 chr6:44148542 5'GT 44148542 Upstream 15bp 14552 chr9 90387870 90387870 1 + G T LUSC 90387871 + 90387851 90387891 41 AATCAGGAATACAGGGAAGGGAAACACAGCTTCACAATGGC AATCAGGAATACAGGGAAGTGAAACACAGCTTCACAATGGC < 41bp 0.520633496143361 0.808887833035516 NA NA prediction 0.57650867378431 Functional Gain - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90387871 chr9:90387870 . . 0 20 hm7G_associated_SNPs_15170 0 0 0 0 1 CTSL3P chr9:90387913 5'GT 90387913 Upstream 44bp 14553 chr6 106992527 106992527 1 + G T SARC 106992528 + 106992508 106992548 41 ACAGGGACTGGAAAGCCTGGGGAGGTTACAATGGAGAGCTT ACAGGGACTGGAAAGCCTGTGGAGGTTACAATGGAGAGCTT < 41bp 0.464586260203439 0.788249371944397 NA NA prediction 0.576498743888793 Functional Gain - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106992528 chr6:106992527 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15171 0 0 1 0 2 CRYBG1 chr6:106992446 3'AG 106992446 Downstream 82bp 14554 chr6 106992527 106992527 1 + G T SARC 106992528 + 106992508 106992548 41 ACAGGGACTGGAAAGCCTGGGGAGGTTACAATGGAGAGCTT ACAGGGACTGGAAAGCCTGTGGAGGTTACAATGGAGAGCTT < 41bp 0.464586260203439 0.788249371944397 NA NA prediction 0.576498743888793 Functional Gain - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106992528 chr6:106992527 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15171 0 0 1 0 2 CRYBG1 chr6:106992572 5'GT 106992572 Upstream 46bp 14555 chrX 153171848 153171848 1 + G T CESC 153171849 + 153171829 153171869 41 TGCAGCTGTGGGCCGCGTGGGACCCGGAGGCACCTCTGGAA TGCAGCTGTGGGCCGCGTGTGACCCGGAGGCACCTCTGGAA < 41bp 0.534853977283612 0.82309936942246 NA NA prediction 0.576490784277698 Functional Gain - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153171849 chrX:153171848 nonsynonymous SNV 0.932 4 20 hm7G_associated_SNPs_15172 0 0 0 0 1 AVPR2 chrX:153171870 5'GT 153171870 Upstream 23bp 14556 chr17 55078352 55078352 1 + G T UCEC 55078353 + 55078333 55078373 41 ATCTCATCGTAGATACCATGGGTAGGAATTGACTCTGAGAG ATCTCATCGTAGATACCATTGGTAGGAATTGACTCTGAGAG < 41bp 0.473612986314848 0.78823800681228 NA NA prediction 0.576476013624561 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55078353 chr17:55078352 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_15173 0 0 1 1 1 SCPEP1 chr17:55078353 5'GT 55078353 Upstream 2bp 14557 chr1 151506541 151506541 1 + G T LUAD 151506542 + 151506522 151506562 41 ACTGGCCCAGCGACTGCAGGGGCTGGAGCAAGAGGCAGAGA ACTGGCCCAGCGACTGCAGTGGCTGGAGCAAGAGGCAGAGA < 41bp 0.568646081854477 0.856854554749581 NA NA prediction 0.576416945790208 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151506542 chr1:151506541 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_15174 0 0 0 0 2 CGN chr1:151506451 3'AG 151506451 Downstream 91bp 14558 chr1 151506541 151506541 1 + G T LUAD 151506542 + 151506522 151506562 41 ACTGGCCCAGCGACTGCAGGGGCTGGAGCAAGAGGCAGAGA ACTGGCCCAGCGACTGCAGTGGCTGGAGCAAGAGGCAGAGA < 41bp 0.568646081854477 0.856854554749581 NA NA prediction 0.576416945790208 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151506542 chr1:151506541 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_15174 0 0 0 0 2 CGN chr1:151506612 5'GT 151506612 Upstream 72bp 14559 chr16 22262558 22262558 1 + G T ESCA 22262559 + 22262539 22262579 41 TACATCGAGCCCGTAGACCGGGATGTGTACTTTGAGGACGT TACATCGAGCCCGTAGACCTGGATGTGTACTTTGAGGACGT < 41bp 0.553818774692782 0.842006250054346 NA NA prediction 0.576374950723128 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22262559 chr16:22262558 nonsynonymous SNV 0.370 4 20 hm7G_associated_SNPs_15176 0 0 1 1 2 EEF2K chr16:22262472 3'AG 22262472 Downstream 87bp 14560 chr16 22262558 22262558 1 + G T ESCA 22262559 + 22262539 22262579 41 TACATCGAGCCCGTAGACCGGGATGTGTACTTTGAGGACGT TACATCGAGCCCGTAGACCTGGATGTGTACTTTGAGGACGT < 41bp 0.553818774692782 0.842006250054346 NA NA prediction 0.576374950723128 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22262559 chr16:22262558 nonsynonymous SNV 0.370 4 20 hm7G_associated_SNPs_15176 0 0 1 1 2 EEF2K chr16:22262643 5'GT 22262643 Upstream 86bp 14561 chr17 1936866 1936866 1 + G T UCEC 1936867 + 1936847 1936887 41 TGAAGAACCCTCAGCTGCAGGCAGCAATCCGGGTCCTGCCT TGAAGAACCCTCAGCTGCATGCAGCAATCCGGGTCCTGCCT < 41bp 0.471714406440786 0.788181212199541 NA NA prediction 0.576362424399082 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1936867 chr17:1936866 nonsynonymous SNV 0.800 1 20 hm7G_associated_SNPs_15178 0 0 1 0 1 DPH1 chr17:1936799 3'AG 1936799 Downstream 68bp 14562 chr6 28195201 28195201 1 + G T LUAD 28195202 + 28195182 28195222 41 AGCTCCAGGGCTGGGTGAGGGAACACTGTCCAGAGAGTGGA AGCTCCAGGGCTGGGTGAGTGAACACTGTCCAGAGAGTGGA < 41bp 0.534611803748685 0.822790898922054 NA NA prediction 0.576358190346739 Functional Gain - ZSCAN9 ENSG00000137185 CDS Human protein_coding chr6:28195202 chr6:28195201 nonsynonymous SNV 0.412 2 20 hm7G_associated_SNPs_15179 0 0 1 0 1 ZSCAN9 chr6:28195282 5'GT 28195282 Upstream 82bp 14563 chr18 60191545 60191545 1 + G T COAD 60191546 + 60191526 60191566 41 CGCTCCGCGGGGGCCCCGAGGACGCGGAGGTGGAGGTAGAG CGCTCCGCGGGGGCCCCGATGACGCGGAGGTGGAGGTAGAG < 41bp 0.479417482264748 0.788167098705924 NA NA prediction 0.576334197411847 Functional Gain - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60191546 chr18:60191545 nonsynonymous SNV 0.890 0 20 hm7G_associated_SNPs_15181 0 0 1 0 1 ZCCHC2 chr18:60191596 5'GT 60191596 Upstream 52bp 14564 chr4 7776563 7776563 1 - C A UCEC 7776562 - 7776542 7776582 41 AGCGGCTACAGACCAAAGAGGAGGAGCTGCTGAAGAGGAAA AGCGGCTACAGACCAAAGATGAGGAGCTGCTGAAGAGGAAA < 41bp 0.461884932578178 0.788157635376552 NA NA prediction 0.576315270753104 Functional Gain - AFAP1 ENSG00000196526 CDS Human protein_coding chr4:7776562 chr4:7776563 nonsynonymous SNV 0.779 4 20 hm7G_associated_SNPs_15182 0 0 0 0 2 AFAP1 chr4:7776466 5'GT 7776466 Upstream 98bp 14565 chr4 7776563 7776563 1 - C A UCEC 7776562 - 7776542 7776582 41 AGCGGCTACAGACCAAAGAGGAGGAGCTGCTGAAGAGGAAA AGCGGCTACAGACCAAAGATGAGGAGCTGCTGAAGAGGAAA < 41bp 0.461884932578178 0.788157635376552 NA NA prediction 0.576315270753104 Functional Gain - AFAP1 ENSG00000196526 CDS Human protein_coding chr4:7776562 chr4:7776563 nonsynonymous SNV 0.779 4 20 hm7G_associated_SNPs_15182 0 0 0 0 2 AFAP1 chr4:7776630 3'AG 7776630 Downstream 68bp 14566 chr2 217300074 217300074 1 + G T SKCM 217300075 + 217300055 217300095 41 CCACAGGCCTTCCTTCGGTGGCTGCCATCTCTGAGCCCAGA CCACAGGCCTTCCTTCGGTTGCTGCCATCTCTGAGCCCAGA < 41bp 0.455969760070212 0.788155194520531 NA NA prediction 0.576310389041062 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217300075 chr2:217300074 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_15183 0 0 1 1 1 SMARCAL1 chr2:217300061 3'AG 217300061 Downstream 14bp 14567 chr17 78219976 78219976 1 + G T HNSC 78219977 + 78219957 78219997 41 GCCGTGAACGCTCAGTCGGGGGTGTGCACCCCGGCGGGGGG GCCGTGAACGCTCAGTCGGTGGTGTGCACCCCGGCGGGGGG < 41bp 0.566713149704308 0.854860114092915 NA NA prediction 0.576293928777213 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219977 chr17:78219976 nonsynonymous SNV 0.868 5 20 hm7G_associated_SNPs_15184 0 0 1 0 2 SLC26A11 chr17:78219953 3'AG 78219953 Downstream 24bp 14568 chr17 78219976 78219976 1 + G T HNSC 78219977 + 78219957 78219997 41 GCCGTGAACGCTCAGTCGGGGGTGTGCACCCCGGCGGGGGG GCCGTGAACGCTCAGTCGGTGGTGTGCACCCCGGCGGGGGG < 41bp 0.566713149704308 0.854860114092915 NA NA prediction 0.576293928777213 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219977 chr17:78219976 nonsynonymous SNV 0.868 5 20 hm7G_associated_SNPs_15184 0 0 1 0 2 SLC26A11 chr17:78220008 5'GT 78220008 Upstream 33bp 14569 chrX 117785975 117785975 1 + G T LUSC 117785976 + 117785956 117785996 41 TGATGTAGCACTAAGCGGAGGATCAAGATTTCAGGAGTCTT TGATGTAGCACTAAGCGGATGATCAAGATTTCAGGAGTCTT < 41bp 0.507155685328783 0.79528163534343 NA NA prediction 0.576251900029294 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117785976 chrX:117785975 stopgain 1.000 1 20 hm7G_associated_SNPs_15188 0 0 0 0 2 DOCK11 chrX:117785927 3'AG 117785927 Downstream 49bp 14570 chrX 117785975 117785975 1 + G T LUSC 117785976 + 117785956 117785996 41 TGATGTAGCACTAAGCGGAGGATCAAGATTTCAGGAGTCTT TGATGTAGCACTAAGCGGATGATCAAGATTTCAGGAGTCTT < 41bp 0.507155685328783 0.79528163534343 NA NA prediction 0.576251900029294 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117785976 chrX:117785975 stopgain 1.000 1 20 hm7G_associated_SNPs_15188 0 0 0 0 2 DOCK11 chrX:117786040 5'GT 117786040 Upstream 66bp 14571 chr6 7862565 7862565 1 + G T LUSC 7862566 + 7862546 7862586 41 ACCCCCGAGCCGCAGGCCTGGTGGGCAGAGACGGCCCTTAC ACCCCCGAGCCGCAGGCCTTGTGGGCAGAGACGGCCCTTAC < 41bp 0.546713647245132 0.834836230944373 NA NA prediction 0.576245167398482 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862566 chr6:7862565 synonymous SNV . 0 20 hm7G_associated_SNPs_15189 0 0 0 0 1 BMP6 chr6:7862534 3'AG 7862534 Downstream 32bp 14572 chr9 100074401 100074401 1 + G T GBM 100074402 + 100074382 100074422 41 GCTTGTGTCTCAGGGAAAAGGAAAGAGCCAAGAGGGAAAAA GCTTGTGTCTCAGGGAAAATGAAAGAGCCAAGAGGGAAAAA < 41bp 0.471638597334027 0.78811827447677 NA NA prediction 0.57623654895354 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100074402 chr9:100074401 nonsynonymous SNV 0.954 0 20 hm7G_associated_SNPs_15190 0 0 0 0 2 CCDC180 chr9:100074395 3'AG 100074395 Downstream 7bp 14573 chr9 100074401 100074401 1 + G T GBM 100074402 + 100074382 100074422 41 GCTTGTGTCTCAGGGAAAAGGAAAGAGCCAAGAGGGAAAAA GCTTGTGTCTCAGGGAAAATGAAAGAGCCAAGAGGGAAAAA < 41bp 0.471638597334027 0.78811827447677 NA NA prediction 0.57623654895354 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100074402 chr9:100074401 nonsynonymous SNV 0.954 0 20 hm7G_associated_SNPs_15190 0 0 0 0 2 CCDC180 chr9:100074483 5'GT 100074483 Upstream 83bp 14574 chr3 186358473 186358473 1 + G T LUSC 186358474 + 186358454 186358494 41 GACGCCCAGGAATACAGACGGGCAAGTAGGGACAGTTCCCA GACGCCCAGGAATACAGACTGGCAAGTAGGGACAGTTCCCA < 41bp 0.479753104305286 0.78809374294536 NA NA prediction 0.576187485890719 Functional Gain - FETUB ENSG00000090512 CDS Human protein_coding chr3:186358474 chr3:186358473 nonsynonymous SNV 0.095 1 20 hm7G_associated_SNPs_15193 0 0 0 0 1 FETUB chr3:186358478 5'GT 186358478 Upstream 6bp 14575 chr12 56536179 56536179 1 + G T GBM 56536180 + 56536160 56536200 41 TTACACTCAGCAGTGGTCAGGGGCAGGTGCTACTGAGAGCA TTACACTCAGCAGTGGTCATGGGCAGGTGCTACTGAGAGCA < 41bp 0.556538583929795 0.844628822994296 NA NA prediction 0.576180478129003 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56536180 chr12:56536179 nonsynonymous SNV 0.958 1 20 hm7G_associated_SNPs_15194 0 0 1 0 1 ESYT1 chr12:56536209 5'GT 56536209 Upstream 31bp 14576 chr15 59808970 59808970 1 + G T PRAD 59808971 + 59808951 59808991 41 AGAAGAGGAGAAGATGCACGGGCGAATCACCAAGCTGGAGT AGAAGAGGAGAAGATGCACTGGCGAATCACCAAGCTGGAGT < 41bp 0.542158580676354 0.830239096228562 NA NA prediction 0.576161031104415 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59808971 chr15:59808970 nonsynonymous SNV 0.869 2 20 hm7G_associated_SNPs_15195 0 0 0 0 1 FAM81A chr15:59809039 5'GT 59809039 Upstream 70bp 14577 chr15 39875873 39875873 1 + G T UCEC 39875874 + 39875854 39875894 41 ACACCAGAAGACATCCTCAGGAACAAAGGCTGCTCCAGCTG ACACCAGAAGACATCCTCATGAACAAAGGCTGCTCCAGCTG < 41bp 0.560309798578999 0.848384883219837 NA NA prediction 0.576150169281677 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39875874 chr15:39875873 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15198 0 0 1 0 2 THBS1 chr15:39875818 3'AG 39875818 Downstream 56bp 14578 chr15 39875873 39875873 1 + G T UCEC 39875874 + 39875854 39875894 41 ACACCAGAAGACATCCTCAGGAACAAAGGCTGCTCCAGCTG ACACCAGAAGACATCCTCATGAACAAAGGCTGCTCCAGCTG < 41bp 0.560309798578999 0.848384883219837 NA NA prediction 0.576150169281677 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39875874 chr15:39875873 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15198 0 0 1 0 2 THBS1 chr15:39875893 5'GT 39875893 Upstream 21bp 14579 chr6 3012810 3012810 1 + G T ACC 3012811 + 3012791 3012831 41 TCCTGAGGTTTTCAATTATGGAGTGGAAACCCACGAAGCCT TCCTGAGGTTTTCAATTATTGAGTGGAAACCCACGAAGCCT < 41bp 0.551340884504665 0.839409618570678 NA NA prediction 0.576137468132025 Functional Gain - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3012811 chr6:3012810 stopgain 0.027 0 20 hm7G_associated_SNPs_15200 0 0 1 0 2 NQO2 chr6:3012778 3'AG 3012778 Downstream 33bp 14580 chr6 3012810 3012810 1 + G T ACC 3012811 + 3012791 3012831 41 TCCTGAGGTTTTCAATTATGGAGTGGAAACCCACGAAGCCT TCCTGAGGTTTTCAATTATTGAGTGGAAACCCACGAAGCCT < 41bp 0.551340884504665 0.839409618570678 NA NA prediction 0.576137468132025 Functional Gain - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3012811 chr6:3012810 stopgain 0.027 0 20 hm7G_associated_SNPs_15200 0 0 1 0 2 NQO2 chr6:3012908 5'GT 3012908 Upstream 99bp 14581 chr10 71853557 71853557 1 + G T COAD 71853558 + 71853538 71853578 41 TGAAGATGGGCCAGGGGATGGATTCACCATTCTGTCTTCTA TGAAGATGGGCCAGGGGATTGATTCACCATTCTGTCTTCTA < 41bp 0.469467773286597 0.788061751052496 NA NA prediction 0.576123502104992 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71853558 chr10:71853557 stopgain 0.999 1 20 hm7G_associated_SNPs_15201 0 0 1 0 2 H2AFY2 chr10:71853491 3'AG 71853491 Downstream 67bp 14582 chr10 71853557 71853557 1 + G T COAD 71853558 + 71853538 71853578 41 TGAAGATGGGCCAGGGGATGGATTCACCATTCTGTCTTCTA TGAAGATGGGCCAGGGGATTGATTCACCATTCTGTCTTCTA < 41bp 0.469467773286597 0.788061751052496 NA NA prediction 0.576123502104992 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71853558 chr10:71853557 stopgain 0.999 1 20 hm7G_associated_SNPs_15201 0 0 1 0 2 H2AFY2 chr10:71853601 5'GT 71853601 Upstream 45bp 14583 chr1 158152874 158152874 1 + G T LUSC 158152875 + 158152855 158152895 41 AACCCTGGATGTGGTGGCTGGGGAGGCAGCTGGCCTGTCCT AACCCTGGATGTGGTGGCTTGGGAGGCAGCTGGCCTGTCCT < 41bp 0.557311473056194 0.84536521345453 NA NA prediction 0.57610748079667 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158152875 chr1:158152874 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_15203 0 0 0 0 1 CD1D chr1:158152946 5'GT 158152946 Upstream 73bp 14584 chr20 23472508 23472508 1 + G T STAD 23472509 + 23472489 23472529 41 ACAAGTATGTCTTCCTGGTGGTCAAGACACTGCAAGCCCAG ACAAGTATGTCTTCCTGGTTGTCAAGACACTGCAAGCCCAG < 41bp 0.480395352747553 0.788023186796421 NA NA prediction 0.576046373592841 Functional Gain - CST8 ENSG00000125815 CDS Human protein_coding chr20:23472509 chr20:23472508 synonymous SNV . 0 20 hm7G_associated_SNPs_15205 0 0 0 0 1 CST8 chr20:23472535 5'GT 23472535 Upstream 28bp 14585 chr1 20234119 20234119 1 + G T UCEC 20234120 + 20234100 20234140 41 AGAAGAAGAAGCGGCAGGAGGAGAGGCACCGCCACAAAGCC AGAAGAAGAAGCGGCAGGATGAGAGGCACCGCCACAAAGCC < 41bp 0.511696465479113 0.799717974063141 NA NA prediction 0.576043017168056 Functional Gain - OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20234120 chr1:20234119 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15206 0 0 1 0 1 OTUD3 chr1:20234063 3'AG 20234063 Downstream 57bp 14586 chr12 6644003 6644003 1 + G T ESCA 6644004 + 6643984 6644024 41 CATCGCTCAGACACCATGGGGAAGGTGAAGGTCGGAGTCAA CATCGCTCAGACACCATGGTGAAGGTGAAGGTCGGAGTCAA < 41bp 0.512953570921352 0.800961335259134 NA NA prediction 0.576015528675564 Functional Gain - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6644004 chr12:6644003 nonsynonymous SNV 0.615 0 20 hm7G_associated_SNPs_15208 0 0 1 0 2 GAPDH chr12:6643976 3'AG 6643976 Downstream 28bp 14587 chr12 6644003 6644003 1 + G T ESCA 6644004 + 6643984 6644024 41 CATCGCTCAGACACCATGGGGAAGGTGAAGGTCGGAGTCAA CATCGCTCAGACACCATGGTGAAGGTGAAGGTCGGAGTCAA < 41bp 0.512953570921352 0.800961335259134 NA NA prediction 0.576015528675564 Functional Gain - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6644004 chr12:6644003 nonsynonymous SNV 0.615 0 20 hm7G_associated_SNPs_15208 0 0 1 0 2 GAPDH chr12:6644027 5'GT 6644027 Upstream 25bp 14588 chr7 75045577 75045577 1 + G T UCEC 75045578 + 75045558 75045598 41 GCTCCCGCCCTGCCTGCCCGGCCCCACCGAGGCCTGAGCAC GCTCCCGCCCTGCCTGCCCTGCCCCACCGAGGCCTGAGCAC < 41bp 0.549061938575681 0.837057518491318 NA NA prediction 0.575991159831275 Functional Gain - NSUN5P1 ENSG00000223705 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:75045578 chr7:75045577 . . 0 20 hm7G_associated_SNPs_15209 0 0 0 0 1 NSUN5P1 chr7:75045554 3'AG 75045554 Downstream 24bp 14589 chr4 123542076 123542076 1 - C A LUSC 123542075 - 123542055 123542095 41 CCACAAATCAAGCTCCCAAGGTCAAGATCGCCACATGATTA CCACAAATCAAGCTCCCAATGTCAAGATCGCCACATGATTA < 41bp 0.502915673027558 0.790883995780826 NA NA prediction 0.575936645506536 Functional Gain - IL21 ENSG00000138684 CDS Human protein_coding chr4:123542075 chr4:123542076 nonsynonymous SNV 0.281 3 20 hm7G_associated_SNPs_15213 0 0 0 0 1 IL21 chr4:123541999 5'GT 123541999 Upstream 78bp 14590 chr20 44527020 44527020 1 + G T LUAD 44527021 + 44527001 44527041 41 CTCAGGGCGCCGGCCACATGGTTCCCACCGACAAGCCCCTC CTCAGGGCGCCGGCCACATTGTTCCCACCGACAAGCCCCTC < 41bp 0.541634695650013 0.829599009471149 NA NA prediction 0.575928627642273 Functional Gain - CTSA ENSG00000064601 CDS Human protein_coding chr20:44527021 chr20:44527020 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15214 0 0 1 0 1 CTSA chr20:44527006 3'AG 44527006 Downstream 15bp 14591 chr19 36362529 36362529 1 + G T LUSC 36362530 + 36362510 36362550 41 ACAGGCCTGCAGCTCCCAGGGCCTCATCCTGCACGGCTCGG ACAGGCCTGCAGCTCCCAGTGCCTCATCCTGCACGGCTCGG < 41bp 0.446612473603861 0.787945838990989 NA NA prediction 0.575891677981978 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36362530 chr19:36362529 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15218 0 0 0 0 1 APLP1 chr19:36362514 3'AG 36362514 Downstream 16bp 14592 chr10 43294061 43294061 1 + G T KIRP 43294062 + 43294042 43294082 41 TGGAGGCCCCCCATGACTGGGATTTAGAGGAGGTAAGTCTG TGGAGGCCCCCCATGACTGTGATTTAGAGGAGGTAAGTCTG < 41bp 0.5485279704671 0.836458098449069 NA NA prediction 0.575860255963939 Functional Gain - BMS1 ENSG00000165733 CDS Human protein_coding chr10:43294062 chr10:43294061 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_15220 0 0 1 0 1 BMS1 chr10:43294073 5'GT 43294073 Upstream 13bp 14593 chr7 143048721 143048721 1 + G T LUAD 143048722 + 143048702 143048742 41 GAGGGGCACACCAAGTCTGGGGTGCAGCTCCGCCCTCCCCT GAGGGGCACACCAAGTCTGTGGTGCAGCTCCGCCCTCCCCT < 41bp 0.543638625903571 0.83156686131036 NA NA prediction 0.575856470813579 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143048722 chr7:143048721 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_15221 0 0 0 0 1 CLCN1 chr7:143048687 3'AG 143048687 Downstream 35bp 14594 chr10 96352000 96352000 1 + G T LUSC 96352001 + 96351981 96352021 41 TTAAGATCGATGAAGAATTGGTAACAAATTCTGGGAAGTTC TTAAGATCGATGAAGAATTTGTAACAAATTCTGGGAAGTTC < 41bp 0.508780328735804 0.796704081822815 NA NA prediction 0.575847506174021 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96352001 chr10:96352000 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15222 0 0 1 0 2 HELLS chr10:96351986 3'AG 96351986 Downstream 15bp 14595 chr10 96352000 96352000 1 + G T LUSC 96352001 + 96351981 96352021 41 TTAAGATCGATGAAGAATTGGTAACAAATTCTGGGAAGTTC TTAAGATCGATGAAGAATTTGTAACAAATTCTGGGAAGTTC < 41bp 0.508780328735804 0.796704081822815 NA NA prediction 0.575847506174021 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96352001 chr10:96352000 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15222 0 0 1 0 2 HELLS chr10:96352069 5'GT 96352069 Upstream 70bp 14596 chr16 67236795 67236795 1 + G T HNSC 67236796 + 67236776 67236816 41 AGTGACACCCCTCTATCAGGGAGCTGCGGGAGAAGCTGAAG AGTGACACCCCTCTATCAGTGAGCTGCGGGAGAAGCTGAAG < 41bp 0.559179582820796 0.847102929264956 NA NA prediction 0.575846692888321 Functional Gain - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236796 chr16:67236795 synonymous SNV . 0 20 hm7G_associated_SNPs_15223 0 0 1 0 1 ELMO3 chr16:67236795 3'AG 67236795 Downstream 1bp 14597 chr5 135188461 135188461 1 + G T SARC 135188462 + 135188442 135188482 41 TCGGGCTGGGAGGGCCCGTGGACCTCATCAAGATCCGGTTG TCGGGCTGGGAGGGCCCGTTGACCTCATCAAGATCCGGTTG < 41bp 0.566188163154187 0.854110859903915 NA NA prediction 0.575845393499456 Functional Gain - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135188462 chr5:135188461 synonymous SNV . 0 20 hm7G_associated_SNPs_15224 0 0 0 0 1 SLC25A48 chr5:135188510 5'GT 135188510 Upstream 50bp 14598 chr17 7415801 7415801 1 + G T COAD 7415802 + 7415782 7415822 41 GTTCCTCTTTGCAGCCACCGGCATGTTCTTTGGTTCAGCAC GTTCCTCTTTGCAGCCACCTGCATGTTCTTTGGTTCAGCAC < 41bp 0.461101476497809 0.787919775054241 NA NA prediction 0.575839550108482 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7415802 chr17:7415801 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_15225 0 0 1 0 1 POLR2A chr17:7415796 3'AG 7415796 Downstream 6bp 14599 chr8 24259555 24259555 1 + G T SKCM 24259556 + 24259536 24259576 41 AATGACAACACCAGTGTGTGGGAACCACCTTCTAGAAGTGG AATGACAACACCAGTGTGTTGGAACCACCTTCTAGAAGTGG < 41bp 0.544354208223545 0.832264711709179 NA NA prediction 0.575821006971268 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24259556 chr8:24259555 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_15226 0 0 0 0 1 ADAMDEC1 chr8:24259605 5'GT 24259605 Upstream 51bp 14600 chr17 74900455 74900455 1 + G T COAD 74900456 + 74900436 74900476 41 TGCCCCCCGCTGCCCTGGAGGAACCAGACGGCTGCCCAGAG TGCCCCCCGCTGCCCTGGATGAACCAGACGGCTGCCCAGAG < 41bp 0.454537303776022 0.787906045123754 NA NA prediction 0.575812090247508 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74900456 chr17:74900455 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15227 0 0 0 0 1 MGAT5B chr17:74900504 5'GT 74900504 Upstream 50bp 14601 chr2 101584779 101584779 1 + G T LUSC 101584780 + 101584760 101584800 41 GGGAAGTCGTGTTGCTACCGGTTTCTGACCAAAGGTCAGCA GGGAAGTCGTGTTGCTACCTGTTTCTGACCAAAGGTCAGCA < 41bp 0.469343248349823 0.787896974663365 NA NA prediction 0.575793949326729 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101584780 chr2:101584779 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15228 0 0 0 0 1 NPAS2 chr2:101584743 3'AG 101584743 Downstream 37bp 14602 chr11 68839416 68839416 1 + G T UCEC 68839417 + 68839397 68839437 41 CTCCAGACCTCGCTGTTTCGGAGGCGGCTGGGAACCCGGGC CTCCAGACCTCGCTGTTTCTGAGGCGGCTGGGAACCCGGGC < 41bp 0.564406428156429 0.85228009327828 NA NA prediction 0.575747330243702 Functional Gain - TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68839417 chr11:68839416 nonsynonymous SNV 0.208 5 20 hm7G_associated_SNPs_15230 0 0 1 0 2 TPCN2 chr11:68839391 3'AG 68839391 Downstream 26bp 14603 chr11 68839416 68839416 1 + G T UCEC 68839417 + 68839397 68839437 41 CTCCAGACCTCGCTGTTTCGGAGGCGGCTGGGAACCCGGGC CTCCAGACCTCGCTGTTTCTGAGGCGGCTGGGAACCCGGGC < 41bp 0.564406428156429 0.85228009327828 NA NA prediction 0.575747330243702 Functional Gain - TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68839417 chr11:68839416 nonsynonymous SNV 0.208 5 20 hm7G_associated_SNPs_15230 0 0 1 0 2 TPCN2 chr11:68839491 5'GT 68839491 Upstream 76bp 14604 chr9 126133184 126133184 1 + G T UCEC 126133185 + 126133165 126133205 41 TCTGCCTTGTGTCCACGGAGGGTCCTGTGTGGATCTGTGGA TCTGCCTTGTGTCCACGGATGGTCCTGTGTGGATCTGTGGA < 41bp 0.554679089964047 0.842546601664196 NA NA prediction 0.575735023400299 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126133185 chr9:126133184 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_15231 0 0 0 0 1 CRB2 chr9:126133259 5'GT 126133259 Upstream 76bp 14605 chr20 34810295 34810295 1 + G T UCEC 34810296 + 34810276 34810316 41 AAACAGACCCATCCCCAGAGGAGAGGGACAAGAAGCCACAG AAACAGACCCATCCCCAGATGAGAGGGACAAGAAGCCACAG < 41bp 0.472749054482708 0.787864972109039 NA NA prediction 0.575729944218078 Functional Gain - EPB41L1 ENSG00000088367 CDS Human protein_coding chr20:34810296 chr20:34810295 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_15232 0 0 1 0 2 EPB41L1 chr20:34810200 3'AG 34810200 Downstream 96bp 14606 chr20 34810295 34810295 1 + G T UCEC 34810296 + 34810276 34810316 41 AAACAGACCCATCCCCAGAGGAGAGGGACAAGAAGCCACAG AAACAGACCCATCCCCAGATGAGAGGGACAAGAAGCCACAG < 41bp 0.472749054482708 0.787864972109039 NA NA prediction 0.575729944218078 Functional Gain - EPB41L1 ENSG00000088367 CDS Human protein_coding chr20:34810296 chr20:34810295 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_15232 0 0 1 0 2 EPB41L1 chr20:34810316 5'GT 34810316 Upstream 22bp 14607 chr20 3052905 3052905 1 + G T CESC 3052906 + 3052886 3052926 41 GGGGCCGCTGCGCGGTCTTGGGCCTCTGCTGCAGCCCGGGT GGGGCCGCTGCGCGGTCTTTGGCCTCTGCTGCAGCCCGGGT < 41bp 0.471588207291521 0.787864932078627 NA NA prediction 0.575729864157254 Functional Gain - OXT ENSG00000101405 CDS Human protein_coding chr20:3052906 chr20:3052905 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_15233 0 0 0 0 1 OXT chr20:3052924 5'GT 3052924 Upstream 20bp 14608 chr10 101591543 101591543 1 + G T UCEC 101591544 + 101591524 101591564 41 GACTATCCAGCATCTCAGAGGGACATGAGAGTTGGAGTCTA GACTATCCAGCATCTCAGATGGACATGAGAGTTGGAGTCTA < 41bp 0.542526472469078 0.830388481237121 NA NA prediction 0.575724017536084 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101591544 chr10:101591543 nonsynonymous SNV 0.952 5 20 hm7G_associated_SNPs_15234 0 0 1 0 1 ABCC2 chr10:101591587 5'GT 101591587 Upstream 45bp 14609 chr4 74353499 74353499 1 + G T UCEC 74353500 + 74353480 74353520 41 TATCAAAAACATGTCTGTGGGGCACTTTTGAAATTTGGAAC TATCAAAAACATGTCTGTGTGGCACTTTTGAAATTTGGAAC < 41bp 0.512905152997379 0.80076345948684 NA NA prediction 0.575716612978922 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74353500 chr4:74353499 nonsynonymous SNV 0.479 3 20 hm7G_associated_SNPs_15236 0 0 0 0 2 AFM chr4:74353441 3'AG 74353441 Downstream 59bp 14610 chr4 74353499 74353499 1 + G T UCEC 74353500 + 74353480 74353520 41 TATCAAAAACATGTCTGTGGGGCACTTTTGAAATTTGGAAC TATCAAAAACATGTCTGTGTGGCACTTTTGAAATTTGGAAC < 41bp 0.512905152997379 0.80076345948684 NA NA prediction 0.575716612978922 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74353500 chr4:74353499 nonsynonymous SNV 0.479 3 20 hm7G_associated_SNPs_15236 0 0 0 0 2 AFM chr4:74353538 5'GT 74353538 Upstream 40bp 14611 chr18 19348706 19348706 1 + G T LUAD 19348707 + 19348687 19348727 41 GATGGAGGAAATGGACGTAGGGGAAAGGTACAGTGTTTCTC GATGGAGGAAATGGACGTATGGGAAAGGTACAGTGTTTCTC < 41bp 0.481543109087945 0.78785690674051 NA NA prediction 0.57571381348102 Functional Gain - MIB1 ENSG00000101752 CDS Human protein_coding chr18:19348707 chr18:19348706 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_15237 0 0 1 0 1 MIB1 chr18:19348713 5'GT 19348713 Upstream 8bp 14612 chr2 242135181 242135181 1 + G T COAD 242135182 + 242135162 242135202 41 CAGCAGGACAGTGCCGCCCGGGACAGAACAGACATGCACAG CAGCAGGACAGTGCCGCCCTGGACAGAACAGACATGCACAG < 41bp 0.473450210870473 0.787855036812197 NA NA prediction 0.575710073624395 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242135182 chr2:242135181 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_15238 0 0 0 0 3 ANO7 chr2:242135118 3'AG 242135118 Downstream 64bp 14613 chr2 242135181 242135181 1 + G T COAD 242135182 + 242135162 242135202 41 CAGCAGGACAGTGCCGCCCGGGACAGAACAGACATGCACAG CAGCAGGACAGTGCCGCCCTGGACAGAACAGACATGCACAG < 41bp 0.473450210870473 0.787855036812197 NA NA prediction 0.575710073624395 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242135182 chr2:242135181 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_15238 0 0 0 0 3 ANO7 chr2:242135121 3'AG 242135121 Downstream 61bp 14614 chr2 242135181 242135181 1 + G T COAD 242135182 + 242135162 242135202 41 CAGCAGGACAGTGCCGCCCGGGACAGAACAGACATGCACAG CAGCAGGACAGTGCCGCCCTGGACAGAACAGACATGCACAG < 41bp 0.473450210870473 0.787855036812197 NA NA prediction 0.575710073624395 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242135182 chr2:242135181 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_15238 0 0 0 0 3 ANO7 chr2:242135260 5'GT 242135260 Upstream 80bp 14615 chr11 60558557 60558557 1 + G T LUAD 60558558 + 60558538 60558578 41 CTTGGTATCCATTCTGGGGGGCTGCCTCTGTGAGTAGAAGG CTTGGTATCCATTCTGGGGTGCTGCCTCTGTGAGTAGAAGG < 41bp 0.546183407998577 0.834036739637937 NA NA prediction 0.575706663278721 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60558558 chr11:60558557 synonymous SNV . 0 20 hm7G_associated_SNPs_15239 0 0 0 0 1 MS4A10 chr11:60558566 5'GT 60558566 Upstream 10bp 14616 chr12 8289466 8289466 1 + G T LUAD 8289467 + 8289447 8289487 41 GGTCAGCGACATTGGCAATGGGTTGATCAGACACCATACAA GGTCAGCGACATTGGCAATTGGTTGATCAGACACCATACAA < 41bp 0.545310133561334 0.833163231444089 NA NA prediction 0.57570619576551 Functional Gain - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8289467 chr12:8289466 nonsynonymous SNV 0.966 3 20 hm7G_associated_SNPs_15240 0 0 0 0 2 CLEC4A chr12:8289384 3'AG 8289384 Downstream 83bp 14617 chr12 8289466 8289466 1 + G T LUAD 8289467 + 8289447 8289487 41 GGTCAGCGACATTGGCAATGGGTTGATCAGACACCATACAA GGTCAGCGACATTGGCAATTGGTTGATCAGACACCATACAA < 41bp 0.545310133561334 0.833163231444089 NA NA prediction 0.57570619576551 Functional Gain - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8289467 chr12:8289466 nonsynonymous SNV 0.966 3 20 hm7G_associated_SNPs_15240 0 0 0 0 2 CLEC4A chr12:8289499 5'GT 8289499 Upstream 34bp 14618 chr11 124750356 124750356 1 + G T LUSC 124750357 + 124750337 124750377 41 AGACCAAGCTTCCTGTCCCGGGGCCAGGGCACCAGCACATG AGACCAAGCTTCCTGTCCCTGGGCCAGGGCACCAGCACATG < 41bp 0.462187676719488 0.787845518291736 NA NA prediction 0.575691036583472 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124750357 chr11:124750356 nonsynonymous SNV 0.160 1 20 hm7G_associated_SNPs_15241 0 0 0 0 1 ROBO3 chr11:124750314 3'AG 124750314 Downstream 43bp 14619 chr1 197896900 197896900 1 + G T LUSC 197896901 + 197896881 197896921 41 GCAGCTTGCCCAGAAAACAGGTCTGACCAAAAGAGTTTTGC GCAGCTTGCCCAGAAAACATGTCTGACCAAAAGAGTTTTGC < 41bp 0.49686364809013 0.787842881798039 NA NA prediction 0.575685763596078 Functional Gain - LHX9 ENSG00000143355 CDS Human protein_coding chr1:197896901 chr1:197896900 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15242 0 0 0 0 1 LHX9 chr1:197896923 5'GT 197896923 Upstream 24bp 14620 chrX 117531051 117531051 1 + G T UCEC 117531052 + 117531032 117531072 41 ACTCTACACATCATGAGAAGGACAAAAGAATATGTAAGGTA ACTCTACACATCATGAGAATGACAAAAGAATATGTAAGGTA < 41bp 0.52606624300722 0.813903236548599 NA NA prediction 0.575673987082757 Functional Gain - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117531052 chrX:117531051 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15243 0 0 0 0 1 WDR44 chrX:117531069 5'GT 117531069 Upstream 19bp 14621 chr20 31652345 31652345 1 + G T HNSC 31652346 + 31652326 31652366 41 CCAACCAGTACATAGAACTGGACATCAACGTGAGTAACCAG CCAACCAGTACATAGAACTTGACATCAACGTGAGTAACCAG < 41bp 0.549297684353443 0.837119322878946 NA NA prediction 0.575643277051008 Functional Gain - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652346 chr20:31652345 synonymous SNV . 0 20 hm7G_associated_SNPs_15244 0 0 0 0 2 BPIFB3 chr20:31652263 3'AG 31652263 Downstream 83bp 14622 chr20 31652345 31652345 1 + G T HNSC 31652346 + 31652326 31652366 41 CCAACCAGTACATAGAACTGGACATCAACGTGAGTAACCAG CCAACCAGTACATAGAACTTGACATCAACGTGAGTAACCAG < 41bp 0.549297684353443 0.837119322878946 NA NA prediction 0.575643277051008 Functional Gain - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31652346 chr20:31652345 synonymous SNV . 0 20 hm7G_associated_SNPs_15244 0 0 0 0 2 BPIFB3 chr20:31652354 5'GT 31652354 Upstream 10bp 14623 chrX 152807167 152807167 1 + G T LUAD 152807168 + 152807148 152807188 41 GCGCAGAAGATGAGGGCGAGGCCGAAGCTGGCTGGATCGAG GCGCAGAAGATGAGGGCGATGCCGAAGCTGGCTGGATCGAG < 41bp 0.564325513835121 0.852144036228169 NA NA prediction 0.575637044786096 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152807168 chrX:152807167 nonsynonymous SNV 0.624 2 20 hm7G_associated_SNPs_15245 0 0 0 0 1 ATP2B3 chrX:152807127 3'AG 152807127 Downstream 41bp 14624 chr13 103520504 103520504 1 + G T LUAD 103520505 + 103520485 103520525 41 AAATTTGGCTTATTTGCTTGGAAGTGATTATACCGAAGGAA AAATTTGGCTTATTTGCTTTGAAGTGATTATACCGAAGGAA < 41bp 0.54542072696492 0.833238348588406 NA NA prediction 0.575635243246972 Functional Gain - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103520505 chr13:103520504 stopgain 0.998 1 20 hm7G_associated_SNPs_15246 0 0 1 0 1 BIVM-ERCC5;ERCC5 chr13:103520463 3'AG 103520463 Downstream 42bp 14625 chrX 100492725 100492725 1 + G T STAD 100492726 + 100492706 100492746 41 CTCAGCTGCCCCTACAGGGGGATGTGGCCCTGGTGCAACAG CTCAGCTGCCCCTACAGGGTGATGTGGCCCTGGTGCAACAG < 41bp 0.559462569482686 0.847279923192752 NA NA prediction 0.575634707420132 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100492726 chrX:100492725 synonymous SNV . 0 20 hm7G_associated_SNPs_15247 0 0 0 0 1 DRP2 chrX:100492764 5'GT 100492764 Upstream 40bp 14626 chr4 110902089 110902089 1 + G T LUAD 110902090 + 110902070 110902110 41 TTTTATGAAAGCCTCAGATGGGAAAACGTGTCTGGCTCTGG TTTTATGAAAGCCTCAGATTGGAAAACGTGTCTGGCTCTGG < 41bp 0.555717888608214 0.843513112759782 NA NA prediction 0.575590448303136 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110902090 chr4:110902089 nonsynonymous SNV 0.983 5 20 hm7G_associated_SNPs_15250 0 0 0 0 1 EGF chr4:110902131 5'GT 110902131 Upstream 43bp 14627 chr7 142829235 142829235 1 + G T LUAD 142829236 + 142829216 142829256 41 TTGCTCCAGCTCCTGTTCAGGGCCAGCCCTGCCACCCTGCT TTGCTCCAGCTCCTGTTCATGGCCAGCCCTGCCACCCTGCT < 41bp 0.488763810486259 0.787784036113985 NA NA prediction 0.575568072227969 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142829236 chr7:142829235 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_15251 0 0 0 0 1 PIP chr7:142829304 5'GT 142829304 Upstream 70bp 14628 chr3 155652827 155652827 1 + G T LAML 155652828 + 155652808 155652848 41 GAGGCCCATAACATTCTCAGGGAGTCTGGTAAGTTGCTCAT GAGGCCCATAACATTCTCATGGAGTCTGGTAAGTTGCTCAT < 41bp 0.548557970602216 0.836315633089069 NA NA prediction 0.575515324973706 Functional Gain - GMPS ENSG00000163655 CDS Human protein_coding chr3:155652828 chr3:155652827 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15252 0 0 0 0 1 GMPS chr3:155652835 5'GT 155652835 Upstream 9bp 14629 chr8 39022632 39022632 1 + G T COAD 39022633 + 39022613 39022653 41 AGATTTCTACAGTTGGTGAGGCAGATGAATTATTGCAAAAA AGATTTCTACAGTTGGTGATGCAGATGAATTATTGCAAAAA < 41bp 0.518026732045438 0.805769459036269 NA NA prediction 0.575485453981661 Functional Gain - ADAM32 ENSG00000197140 CDS Human protein_coding chr8:39022633 chr8:39022632 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_15253 0 0 0 0 2 ADAM32 chr8:39022549 3'AG 39022549 Downstream 84bp 14630 chr8 39022632 39022632 1 + G T COAD 39022633 + 39022613 39022653 41 AGATTTCTACAGTTGGTGAGGCAGATGAATTATTGCAAAAA AGATTTCTACAGTTGGTGATGCAGATGAATTATTGCAAAAA < 41bp 0.518026732045438 0.805769459036269 NA NA prediction 0.575485453981661 Functional Gain - ADAM32 ENSG00000197140 CDS Human protein_coding chr8:39022633 chr8:39022632 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_15253 0 0 0 0 2 ADAM32 chr8:39022715 5'GT 39022715 Upstream 84bp 14631 chr16 88675419 88675419 1 + G T STAD 88675420 + 88675400 88675440 41 GGACAGTATGAGAATTTCAGGGTGCAGTATACAGAAACAGA GGACAGTATGAGAATTTCATGGTGCAGTATACAGAAACAGA < 41bp 0.549258104127696 0.836980858734185 NA NA prediction 0.57544550921298 Functional Gain - ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88675420 chr16:88675419 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_15254 0 0 1 0 3 ZC3H18 chr16:88675342 3'AG 88675342 Downstream 78bp 14632 chr16 88675419 88675419 1 + G T STAD 88675420 + 88675400 88675440 41 GGACAGTATGAGAATTTCAGGGTGCAGTATACAGAAACAGA GGACAGTATGAGAATTTCATGGTGCAGTATACAGAAACAGA < 41bp 0.549258104127696 0.836980858734185 NA NA prediction 0.57544550921298 Functional Gain - ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88675420 chr16:88675419 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_15254 0 0 1 0 3 ZC3H18 chr16:88675459 5'GT 88675459 Upstream 41bp 14633 chr16 88675419 88675419 1 + G T STAD 88675420 + 88675400 88675440 41 GGACAGTATGAGAATTTCAGGGTGCAGTATACAGAAACAGA GGACAGTATGAGAATTTCATGGTGCAGTATACAGAAACAGA < 41bp 0.549258104127696 0.836980858734185 NA NA prediction 0.57544550921298 Functional Gain - ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88675420 chr16:88675419 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_15254 0 0 1 0 3 ZC3H18 chr16:88675463 5'GT 88675463 Upstream 45bp 14634 chr7 87782583 87782583 1 + G T LIHC 87782584 + 87782564 87782604 41 TGAGAAACTGAATATTGAAGGGACGGAGAAGGGTAACTGTG TGAGAAACTGAATATTGAATGGACGGAGAAGGGTAACTGTG < 41bp 0.487362619799214 0.787717802626873 NA NA prediction 0.575435605253746 Functional Gain - ADAM22 ENSG00000008277 CDS Human protein_coding chr7:87782584 chr7:87782583 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_15256 0 0 1 0 2 ADAM22 chr7:87782536 3'AG 87782536 Downstream 48bp 14635 chr7 87782583 87782583 1 + G T LIHC 87782584 + 87782564 87782604 41 TGAGAAACTGAATATTGAAGGGACGGAGAAGGGTAACTGTG TGAGAAACTGAATATTGAATGGACGGAGAAGGGTAACTGTG < 41bp 0.487362619799214 0.787717802626873 NA NA prediction 0.575435605253746 Functional Gain - ADAM22 ENSG00000008277 CDS Human protein_coding chr7:87782584 chr7:87782583 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_15256 0 0 1 0 2 ADAM22 chr7:87782641 5'GT 87782641 Upstream 59bp 14636 chr22 40356136 40356136 1 + G T LUAD 40356137 + 40356117 40356157 41 GTTGGCTTCTTCATCATCCGGGCCAGCCAGAGCTCCCCAGG GTTGGCTTCTTCATCATCCTGGCCAGCCAGAGCTCCCCAGG < 41bp 0.560493498835642 0.848205048248815 NA NA prediction 0.575423098826348 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40356137 chr22:40356136 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15258 0 0 0 0 2 GRAP2 chr22:40356059 3'AG 40356059 Downstream 78bp 14637 chr22 40356136 40356136 1 + G T LUAD 40356137 + 40356117 40356157 41 GTTGGCTTCTTCATCATCCGGGCCAGCCAGAGCTCCCCAGG GTTGGCTTCTTCATCATCCTGGCCAGCCAGAGCTCCCCAGG < 41bp 0.560493498835642 0.848205048248815 NA NA prediction 0.575423098826348 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40356137 chr22:40356136 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15258 0 0 0 0 2 GRAP2 chr22:40356178 5'GT 40356178 Upstream 43bp 14638 chr20 35944761 35944761 1 + G T UCEC 35944762 + 35944742 35944782 41 AGGTGACGAGGAAGCCCAAGGCTGCTGTTCCTTCTGTGAAC AGGTGACGAGGAAGCCCAATGCTGCTGTTCCTTCTGTGAAC < 41bp 0.466530338283991 0.787698126508035 NA NA prediction 0.57539625301607 Functional Gain - MANBAL ENSG00000101363 CDS Human protein_coding chr20:35944762 chr20:35944761 nonsynonymous SNV 0.390 2 20 hm7G_associated_SNPs_15261 0 0 1 0 1 MANBAL chr20:35944711 3'AG 35944711 Downstream 51bp 14639 chr13 25425648 25425648 1 + G T UCEC 25425649 + 25425629 25425669 41 TTTCTGCAGAGATGAAAAAGGAGAGCGTGTTGATGTTTCTA TTTCTGCAGAGATGAAAAATGAGAGCGTGTTGATGTTTCTA < 41bp 0.487907825418533 0.787696351728946 NA NA prediction 0.575392703457893 Functional Gain - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25425649 chr13:25425648 stopgain 1.000 0 20 hm7G_associated_SNPs_15262 0 0 0 3 2 RNF17 chr13:25425594 3'AG 25425594 Downstream 55bp 14640 chr13 25425648 25425648 1 + G T UCEC 25425649 + 25425629 25425669 41 TTTCTGCAGAGATGAAAAAGGAGAGCGTGTTGATGTTTCTA TTTCTGCAGAGATGAAAAATGAGAGCGTGTTGATGTTTCTA < 41bp 0.487907825418533 0.787696351728946 NA NA prediction 0.575392703457893 Functional Gain - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25425649 chr13:25425648 stopgain 1.000 0 20 hm7G_associated_SNPs_15262 0 0 0 3 2 RNF17 chr13:25425709 5'GT 25425709 Upstream 62bp 14641 chrX 133607407 133607407 1 + G T LIHC 133607408 + 133607388 133607428 41 GATTAGTGATGATGAACCAGGTTATGACCTTGATTTATTTT GATTAGTGATGATGAACCATGTTATGACCTTGATTTATTTT < 41bp 0.501829618417141 0.789524695751645 NA NA prediction 0.575390154669007 Functional Gain - HPRT1 ENSG00000165704 CDS Human protein_coding chrX:133607408 chrX:133607407 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15263 0 0 1 1 2 HPRT1 chrX:133607389 3'AG 133607389 Downstream 19bp 14642 chrX 133607407 133607407 1 + G T LIHC 133607408 + 133607388 133607428 41 GATTAGTGATGATGAACCAGGTTATGACCTTGATTTATTTT GATTAGTGATGATGAACCATGTTATGACCTTGATTTATTTT < 41bp 0.501829618417141 0.789524695751645 NA NA prediction 0.575390154669007 Functional Gain - HPRT1 ENSG00000165704 CDS Human protein_coding chrX:133607408 chrX:133607407 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15263 0 0 1 1 2 HPRT1 chrX:133607495 5'GT 133607495 Upstream 89bp 14643 chr22 24034673 24034673 1 + G T COAD 24034674 + 24034654 24034694 41 CCATCAGGAAATTGTCCTAGGCCAGTTGGTGCTTCCGGAGC CCATCAGGAAATTGTCCTATGCCAGTTGGTGCTTCCGGAGC < 41bp 0.450132713826981 0.787691996995462 NA NA prediction 0.575383993990924 Functional Gain - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24034674 chr22:24034673 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_15264 0 0 0 0 1 RGL4 chr22:24034715 5'GT 24034715 Upstream 43bp 14644 chr6 43190122 43190122 1 + G T OV 43190123 + 43190103 43190143 41 GGTGCACTTTCCATCACCAGGCGCGGGTGAGTCGGGAGGAA GGTGCACTTTCCATCACCATGCGCGGGTGAGTCGGGAGGAA < 41bp 0.461753829461581 0.787680085494919 NA NA prediction 0.575360170989837 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43190123 chr6:43190122 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_15265 0 0 0 0 2 CUL9 chr6:43190054 3'AG 43190054 Downstream 69bp 14645 chr6 43190122 43190122 1 + G T OV 43190123 + 43190103 43190143 41 GGTGCACTTTCCATCACCAGGCGCGGGTGAGTCGGGAGGAA GGTGCACTTTCCATCACCATGCGCGGGTGAGTCGGGAGGAA < 41bp 0.461753829461581 0.787680085494919 NA NA prediction 0.575360170989837 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43190123 chr6:43190122 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_15265 0 0 0 0 2 CUL9 chr6:43190128 5'GT 43190128 Upstream 7bp 14646 chr2 223553201 223553201 1 + G T CESC 223553202 + 223553182 223553222 41 TCCAGCTGGATCAAAAATTGGACTCTTTGGAAACACTTTAA TCCAGCTGGATCAAAAATTTGACTCTTTGGAAACACTTTAA < 41bp 0.544702057391539 0.832381410645369 NA NA prediction 0.575358706507659 Functional Gain - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223553202 chr2:223553201 nonsynonymous SNV 0.468 0 20 hm7G_associated_SNPs_15266 0 0 0 0 1 MOGAT1 chr2:223553241 5'GT 223553241 Upstream 41bp 14647 chr11 7586982 7586982 1 + G T COAD 7586983 + 7586963 7587003 41 GCTGCCTACATAAAGGAATGGTTTGAAGAGAGCTTGGTGAG GCTGCCTACATAAAGGAATTGTTTGAAGAGAGCTTGGTGAG < 41bp 0.4901865720709 0.787644328115171 NA NA prediction 0.575288656230341 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7586983 chr11:7586982 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15270 0 0 0 0 1 PPFIBP2 chr11:7586998 5'GT 7586998 Upstream 17bp 14648 chr2 187605168 187605168 1 + G T LUAD 187605169 + 187605149 187605189 41 GTGTTGACCCCTCTGCCTTGGAAAACCAGAAGAATGCCAAG GTGTTGACCCCTCTGCCTTTGAAAACCAGAAGAATGCCAAG < 41bp 0.522608979831745 0.810250425682578 NA NA prediction 0.575282891701666 Functional Gain - FAM171B ENSG00000144369 CDS Human protein_coding chr2:187605169 chr2:187605168 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_15271 0 0 1 0 1 FAM171B chr2:187605188 5'GT 187605188 Upstream 21bp 14649 chr1 55063027 55063027 1 + G T LUAD 55063028 + 55063008 55063048 41 TCCCCACGCCAATCACCAGGGCAACACCTTTGGGGGCCAGA TCCCCACGCCAATCACCAGTGCAACACCTTTGGGGGCCAGA < 41bp 0.577293554556194 0.86493399715775 NA NA prediction 0.575280885203113 Functional Gain - ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55063028 chr1:55063027 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15272 0 0 0 0 2 ACOT11 chr1:55062932 3'AG 55062932 Downstream 96bp 14650 chr1 55063027 55063027 1 + G T LUAD 55063028 + 55063008 55063048 41 TCCCCACGCCAATCACCAGGGCAACACCTTTGGGGGCCAGA TCCCCACGCCAATCACCAGTGCAACACCTTTGGGGGCCAGA < 41bp 0.577293554556194 0.86493399715775 NA NA prediction 0.575280885203113 Functional Gain - ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55063028 chr1:55063027 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15272 0 0 0 0 2 ACOT11 chr1:55063088 5'GT 55063088 Upstream 62bp 14651 chr17 79985276 79985276 1 + G T LUAD 79985277 + 79985257 79985297 41 CCCAGTTCCTCGACTTGATGGAGACTATTGATAAGCAGCGA CCCAGTTCCTCGACTTGATTGAGACTATTGATAAGCAGCGA < 41bp 0.454769017131363 0.787637594453857 NA NA prediction 0.575275188907715 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79985277 chr17:79985276 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15273 0 0 1 0 2 LRRC45 chr17:79985262 3'AG 79985262 Downstream 15bp 14652 chr17 79985276 79985276 1 + G T LUAD 79985277 + 79985257 79985297 41 CCCAGTTCCTCGACTTGATGGAGACTATTGATAAGCAGCGA CCCAGTTCCTCGACTTGATTGAGACTATTGATAAGCAGCGA < 41bp 0.454769017131363 0.787637594453857 NA NA prediction 0.575275188907715 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79985277 chr17:79985276 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15273 0 0 1 0 2 LRRC45 chr17:79985320 5'GT 79985320 Upstream 45bp 14653 chr12 4854759 4854759 1 + G T LUAD 4854760 + 4854740 4854780 41 GATGCACTGCCACAAGCCTGGATTGATCTGCATGATGTCAC GATGCACTGCCACAAGCCTTGATTGATCTGCATGATGTCAC < 41bp 0.467277212711697 0.787636678162733 NA NA prediction 0.575273356325467 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4854760 chr12:4854759 nonsynonymous SNV 0.246 4 20 hm7G_associated_SNPs_15274 0 0 0 0 1 GALNT8 chr12:4854792 5'GT 4854792 Upstream 34bp 14654 chr3 44879865 44879865 1 + G T ESCA 44879866 + 44879846 44879886 41 GGCTGCTGCAGTCTGCCCAGGAAGAACTGACCAAGAAGGAA GGCTGCTGCAGTCTGCCCATGAAGAACTGACCAAGAAGGAA < 41bp 0.482897981485265 0.787618012619257 NA NA prediction 0.575236025238514 Functional Gain - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44879866 chr3:44879865 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_15277 0 0 1 0 2 KIF15 chr3:44879767 3'AG 44879767 Downstream 99bp 14655 chr3 44879865 44879865 1 + G T ESCA 44879866 + 44879846 44879886 41 GGCTGCTGCAGTCTGCCCAGGAAGAACTGACCAAGAAGGAA GGCTGCTGCAGTCTGCCCATGAAGAACTGACCAAGAAGGAA < 41bp 0.482897981485265 0.787618012619257 NA NA prediction 0.575236025238514 Functional Gain - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44879866 chr3:44879865 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_15277 0 0 1 0 2 KIF15 chr3:44879913 5'GT 44879913 Upstream 49bp 14656 chr3 111319602 111319602 1 + G T UCEC 111319603 + 111319583 111319623 41 TACTAATGAAGAGAGAAAAGGCAAAGATGGATTTTTGGAAC TACTAATGAAGAGAGAAAATGCAAAGATGGATTTTTGGAAC < 41bp 0.504577420703088 0.792186539352425 NA NA prediction 0.575218237298674 Functional Gain - CD96 ENSG00000153283 CDS Human protein_coding chr3:111319603 chr3:111319602 nonsynonymous SNV 0.022 0 20 hm7G_associated_SNPs_15278 0 0 0 0 1 CD96 chr3:111319573 3'AG 111319573 Downstream 30bp 14657 chr1 20931506 20931506 1 + G T UCEC 20931507 + 20931487 20931527 41 CCGTCTCAGAAGGGTACAAGGATTTCAGGGCAATTGCTATC CCGTCTCAGAAGGGTACAATGATTTCAGGGCAATTGCTATC < 41bp 0.550778574171217 0.838379662508642 NA NA prediction 0.57520217667485 Functional Gain - CDA ENSG00000158825 CDS Human protein_coding chr1:20931507 chr1:20931506 nonsynonymous SNV 0.980 1 20 hm7G_associated_SNPs_15279 0 0 0 1 1 CDA chr1:20931532 5'GT 20931532 Upstream 27bp 14658 chr12 1943433 1943433 1 + G T LUSC 1943434 + 1943414 1943454 41 TTTTCTCTTCTGCATGTAGGGGGACGCTTGGACCAGCTTGC TTTTCTCTTCTGCATGTAGTGGGACGCTTGGACCAGCTTGC < 41bp 0.537885502083817 0.825470092815622 NA NA prediction 0.575169181463612 Functional Gain - LRTM2 ENSG00000166159 CDS Human protein_coding chr12:1943434 chr12:1943433 nonsynonymous SNV 0.858 4 20 hm7G_associated_SNPs_15280 0 0 0 0 1 LRTM2 chr12:1943433 3'AG 1943433 Downstream 1bp 14659 chr11 250837 250837 1 + G T OV 250838 + 250818 250858 41 AATGAAGCCCAGCTTCTGAGGAAAATTCAGTTGTTGTGCCT AATGAAGCCCAGCTTCTGATGAAAATTCAGTTGTTGTGCCT < 41bp 0.457996374530157 0.787571379621344 NA NA prediction 0.575142759242689 Functional Gain - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:250838 chr11:250837 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15281 0 0 1 1 2 PSMD13 chr11:250803 3'AG 250803 Downstream 35bp 14660 chr11 250837 250837 1 + G T OV 250838 + 250818 250858 41 AATGAAGCCCAGCTTCTGAGGAAAATTCAGTTGTTGTGCCT AATGAAGCCCAGCTTCTGATGAAAATTCAGTTGTTGTGCCT < 41bp 0.457996374530157 0.787571379621344 NA NA prediction 0.575142759242689 Functional Gain - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:250838 chr11:250837 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15281 0 0 1 1 2 PSMD13 chr11:250865 5'GT 250865 Upstream 29bp 14661 chr2 175263070 175263070 1 + G T UCEC 175263071 + 175263051 175263091 41 CCAGCAACAGTCGATAACAGGATTATTTTTGGAAAAAATTC CCAGCAACAGTCGATAACATGATTATTTTTGGAAAAAATTC < 41bp 0.485282411317432 0.787569924716766 NA NA prediction 0.575139849433532 Functional Gain - SCRN3 ENSG00000144306 CDS Human protein_coding chr2:175263071 chr2:175263070 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_15282 0 0 1 0 1 SCRN3 chr2:175263003 3'AG 175263003 Downstream 68bp 14662 chr9 135042390 135042390 1 + G T COAD 135042391 + 135042371 135042411 41 GGTGAAGGTGGAGCCCTCAGGCATCACATGTGGAGACCCCC GGTGAAGGTGGAGCCCTCATGCATCACATGTGGAGACCCCC < 41bp 0.564310148843846 0.851877694959162 NA NA prediction 0.575135092230632 Functional Gain - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135042391 chr9:135042390 nonsynonymous SNV 0.673 4 20 hm7G_associated_SNPs_15283 0 0 0 0 1 NTNG2 chr9:135042431 5'GT 135042431 Upstream 42bp 14663 chr8 101237442 101237442 1 + G T THCA 101237443 + 101237423 101237463 41 CTGGATGGACCAAATTGGCGGGAGAAGCTGTCACCTATTCC CTGGATGGACCAAATTGGCTGGAGAAGCTGTCACCTATTCC < 41bp 0.553819885020559 0.841373134790318 NA NA prediction 0.575106499539518 Functional Gain - SPAG1 ENSG00000104450 CDS Human protein_coding chr8:101237443 chr8:101237442 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_15284 0 0 0 0 1 SPAG1 chr8:101237401 3'AG 101237401 Downstream 42bp 14664 chr16 88599104 88599104 1 + G T STAD 88599105 + 88599085 88599125 41 GGCACCTCAAGGTGCACACGGACACGCTGAGCGGTAGGCAC GGCACCTCAAGGTGCACACTGACACGCTGAGCGGTAGGCAC < 41bp 0.4619004844478 0.7875481541455 NA NA prediction 0.575096308290999 Functional Gain - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88599105 chr16:88599104 synonymous SNV . 0 20 hm7G_associated_SNPs_15286 0 0 1 0 2 ZFPM1 chr16:88599022 3'AG 88599022 Downstream 83bp 14665 chr16 88599104 88599104 1 + G T STAD 88599105 + 88599085 88599125 41 GGCACCTCAAGGTGCACACGGACACGCTGAGCGGTAGGCAC GGCACCTCAAGGTGCACACTGACACGCTGAGCGGTAGGCAC < 41bp 0.4619004844478 0.7875481541455 NA NA prediction 0.575096308290999 Functional Gain - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88599105 chr16:88599104 synonymous SNV . 0 20 hm7G_associated_SNPs_15286 0 0 1 0 2 ZFPM1 chr16:88599117 5'GT 88599117 Upstream 14bp 14666 chr6 122734776 122734776 1 + G T UCEC 122734777 + 122734757 122734797 41 CAGGAAACTATTGAGTCCAGGCTTTCTGAATTAAAAAGGTA CAGGAAACTATTGAGTCCATGCTTTCTGAATTAAAAAGGTA < 41bp 0.525995415399667 0.813543374810793 NA NA prediction 0.575095918822252 Functional Gain - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122734777 chr6:122734776 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15287 0 0 1 0 1 HSF2 chr6:122734794 5'GT 122734794 Upstream 19bp 14667 chr17 64880735 64880735 1 + G T LUSC 64880736 + 64880716 64880756 41 TACTTCAACTACAAGTATGGGTGGTCGTTTGCCTTCGCCGC TACTTCAACTACAAGTATGTGTGGTCGTTTGCCTTCGCCGC < 41bp 0.48008818729846 0.787543576412836 NA NA prediction 0.575087152825673 Functional Gain - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64880736 chr17:64880735 nonsynonymous SNV 0.705 5 20 hm7G_associated_SNPs_15288 0 0 0 0 1 CACNG5 chr17:64880778 5'GT 64880778 Upstream 44bp 14668 chr12 56489560 56489560 1 + G T UCEC 56489561 + 56489541 56489581 41 GCCGGATTCAGAATAAAAGGGCTATGAGGCGATACTTGGAA GCCGGATTCAGAATAAAAGTGCTATGAGGCGATACTTGGAA < 41bp 0.462387998910004 0.787540694291203 NA NA prediction 0.575081388582406 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56489561 chr12:56489560 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15290 0 0 1 0 1 ERBB3 chr12:56489590 5'GT 56489590 Upstream 31bp 14669 chr21 45706514 45706514 1 + G T UCEC 45706515 + 45706495 45706535 41 TGTCCTGGCTGCTGACCCAGGACTCCACAGCCATCCTGGAC TGTCCTGGCTGCTGACCCATGACTCCACAGCCATCCTGGAC < 41bp 0.452475500441631 0.787516673788323 NA NA prediction 0.575033347576646 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45706515 chr21:45706514 nonsynonymous SNV 0.113 3 20 hm7G_associated_SNPs_15293 0 0 0 0 1 AIRE chr21:45706440 3'AG 45706440 Downstream 75bp 14670 chr3 108549564 108549564 1 + G T LUAD 108549565 + 108549545 108549585 41 GGGACTTCTAGCATTGTTGGGCTTGGCTTTGGTTATATCAC GGGACTTCTAGCATTGTTGTGCTTGGCTTTGGTTATATCAC < 41bp 0.533798569352678 0.82127792958332 NA NA prediction 0.574958720461284 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108549565 chr3:108549564 nonsynonymous SNV 0.953 0 20 hm7G_associated_SNPs_15298 0 0 0 0 2 TRAT1 chr3:108549517 3'AG 108549517 Downstream 48bp 14671 chr3 108549564 108549564 1 + G T LUAD 108549565 + 108549545 108549585 41 GGGACTTCTAGCATTGTTGGGCTTGGCTTTGGTTATATCAC GGGACTTCTAGCATTGTTGTGCTTGGCTTTGGTTATATCAC < 41bp 0.533798569352678 0.82127792958332 NA NA prediction 0.574958720461284 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108549565 chr3:108549564 nonsynonymous SNV 0.953 0 20 hm7G_associated_SNPs_15298 0 0 0 0 2 TRAT1 chr3:108549627 5'GT 108549627 Upstream 64bp 14672 chr1 156845334 156845334 1 + G T UCEC 156845335 + 156845315 156845355 41 CGGCTGTGCTGGCTCCAGAGGATGGGCTGGCCATGTCCCTG CGGCTGTGCTGGCTCCAGATGATGGGCTGGCCATGTCCCTG < 41bp 0.5643856637417 0.851859190625907 NA NA prediction 0.574947053768412 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845335 chr1:156845334 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_15300 0 0 1 0 1 NTRK1 chr1:156845312 3'AG 156845312 Downstream 23bp 14673 chr10 82331222 82331222 1 + G T LUAD 82331223 + 82331203 82331243 41 GAGATCACCAAGAAGTTCCGGGATGCTCTGGCCAATGAGAA GAGATCACCAAGAAGTTCCTGGATGCTCTGGCCAATGAGAA < 41bp 0.557521166521367 0.844978368538978 NA NA prediction 0.574914404035223 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331223 chr10:82331222 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15302 0 0 0 0 1 SH2D4B chr10:82331187 3'AG 82331187 Downstream 36bp 14674 chr8 69381012 69381012 1 + G T LUSC 69381013 + 69380993 69381033 41 AATTGAATCACATCCTTCAGGAGAGCAAGAAGCTGGGGAAA AATTGAATCACATCCTTCATGAGAGCAAGAAGCTGGGGAAA < 41bp 0.495806218215299 0.78745088582794 NA NA prediction 0.57490177165588 Functional Gain - C8orf34 ENSG00000165084 CDS Human protein_coding chr8:69381013 chr8:69381012 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15303 0 0 0 0 2 C8orf34 chr8:69380927 3'AG 69380927 Downstream 86bp 14675 chr8 69381012 69381012 1 + G T LUSC 69381013 + 69380993 69381033 41 AATTGAATCACATCCTTCAGGAGAGCAAGAAGCTGGGGAAA AATTGAATCACATCCTTCATGAGAGCAAGAAGCTGGGGAAA < 41bp 0.495806218215299 0.78745088582794 NA NA prediction 0.57490177165588 Functional Gain - C8orf34 ENSG00000165084 CDS Human protein_coding chr8:69381013 chr8:69381012 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15303 0 0 0 0 2 C8orf34 chr8:69381055 5'GT 69381055 Upstream 44bp 14676 chr6 107827511 107827511 1 + G T LGG 107827512 + 107827492 107827532 41 ACCATACAATATAAGCACAGGCTATTCAGGGCTTGCCACTG ACCATACAATATAAGCACATGCTATTCAGGGCTTGCCACTG < 41bp 0.560388449252896 0.847830798858061 NA NA prediction 0.57488469921033 Functional Gain - SOBP ENSG00000112320 CDS Human protein_coding chr6:107827512 chr6:107827511 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15304 0 0 1 0 1 SOBP chr6:107827446 3'AG 107827446 Downstream 66bp 14677 chr3 51733559 51733559 1 + G T LUAD 51733560 + 51733540 51733580 41 GGAAATGGCGGGGGCTTGTGGAGGCCATTGACACCCAGGTG GGAAATGGCGGGGGCTTGTTGAGGCCATTGACACCCAGGTG < 41bp 0.552442705233106 0.839876155445726 NA NA prediction 0.574866900425241 Functional Gain - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51733560 chr3:51733559 synonymous SNV . 0 20 hm7G_associated_SNPs_15306 0 0 1 0 1 TEX264 chr3:51733590 5'GT 51733590 Upstream 32bp 14678 chrX 150156274 150156274 1 + G T UCEC 150156275 + 150156255 150156295 41 TGCTGACTATAAGTCGAAAGGAAAGTTTGATGGTGCAAAGG TGCTGACTATAAGTCGAAATGAAAGTTTGATGGTGCAAAGG < 41bp 0.505757004233741 0.793181540583875 NA NA prediction 0.574849072700268 Functional Gain - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156275 chrX:150156274 stopgain 0.998 1 20 hm7G_associated_SNPs_15307 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 25bp 14679 chr2 241533371 241533371 1 + G T COAD 241533372 + 241533352 241533392 41 TTCATTGTCTCGGACCTGCGGGAGCTCCAGGGTCAGGCGGG TTCATTGTCTCGGACCTGCTGGAGCTCCAGGGTCAGGCGGG < 41bp 0.552122189718958 0.839538678031305 NA NA prediction 0.574832976624694 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533372 chr2:241533371 nonsynonymous SNV 0.648 1 20 hm7G_associated_SNPs_15308 0 0 1 0 2 CAPN10 chr2:241533323 3'AG 241533323 Downstream 49bp 14680 chr2 241533371 241533371 1 + G T COAD 241533372 + 241533352 241533392 41 TTCATTGTCTCGGACCTGCGGGAGCTCCAGGGTCAGGCGGG TTCATTGTCTCGGACCTGCTGGAGCTCCAGGGTCAGGCGGG < 41bp 0.552122189718958 0.839538678031305 NA NA prediction 0.574832976624694 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533372 chr2:241533371 nonsynonymous SNV 0.648 1 20 hm7G_associated_SNPs_15308 0 0 1 0 2 CAPN10 chr2:241533464 5'GT 241533464 Upstream 94bp 14681 chr19 18305592 18305592 1 + G T OV 18305593 + 18305573 18305613 41 GGTTTGCTTCCCAGGCCTTGGCTGCCTGGAGGGTCAGACAG GGTTTGCTTCCCAGGCCTTTGCTGCCTGGAGGGTCAGACAG < 41bp 0.562174898647745 0.849582279037162 NA NA prediction 0.574814760778834 Functional Gain - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305593 chr19:18305592 nonsynonymous SNV 0.954 1 20 hm7G_associated_SNPs_15309 0 0 1 0 2 MPV17L2 chr19:18305587 3'AG 18305587 Downstream 6bp 14682 chr19 18305592 18305592 1 + G T OV 18305593 + 18305573 18305613 41 GGTTTGCTTCCCAGGCCTTGGCTGCCTGGAGGGTCAGACAG GGTTTGCTTCCCAGGCCTTTGCTGCCTGGAGGGTCAGACAG < 41bp 0.562174898647745 0.849582279037162 NA NA prediction 0.574814760778834 Functional Gain - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305593 chr19:18305592 nonsynonymous SNV 0.954 1 20 hm7G_associated_SNPs_15309 0 0 1 0 2 MPV17L2 chr19:18305663 5'GT 18305663 Upstream 72bp 14683 chr1 159023479 159023479 1 + G T COAD 159023480 + 159023460 159023500 41 ACCGAAAAGTGGGAATACCGGGGAGTTGAGATCTGTAATTC ACCGAAAAGTGGGAATACCTGGGAGTTGAGATCTGTAATTC < 41bp 0.49051768470147 0.787406508227062 NA NA prediction 0.574813016454123 Functional Gain - IFI16 ENSG00000163565 CDS Human protein_coding chr1:159023480 chr1:159023479 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_15310 0 0 0 0 1 IFI16 chr1:159023514 5'GT 159023514 Upstream 36bp 14684 chr10 106207461 106207461 1 + G T LUAD 106207462 + 106207442 106207482 41 CTGCTCTCCACTAGGAAAAGGAGAAACTCTACATGGAACTA CTGCTCTCCACTAGGAAAATGAGAAACTCTACATGGAACTA < 41bp 0.480499148969458 0.787402903688661 NA NA prediction 0.574805807377322 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106207462 chr10:106207461 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_15311 0 0 0 0 1 CFAP58 chr10:106207456 3'AG 106207456 Downstream 6bp 14685 chr11 68343495 68343495 1 + G T GBM 68343496 + 68343476 68343516 41 TTAGGAGAAACTAACAAGAGGAACACGGTAGATCTAGTAGG TTAGGAGAAACTAACAAGATGAACACGGTAGATCTAGTAGG < 41bp 0.526727894504385 0.81412088621161 NA NA prediction 0.57478598341445 Functional Gain - PPP6R3 ENSG00000110075 CDS Human protein_coding chr11:68343496 chr11:68343495 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15312 0 0 1 0 1 PPP6R3 chr11:68343511 5'GT 68343511 Upstream 17bp 14686 chr3 186437939 186437939 1 + G T LUAD 186437940 + 186437920 186437960 41 CAAGTACGAAATCAAGGAGGGGGATTGTCCTGTTCAAAGTG CAAGTACGAAATCAAGGAGTGGGATTGTCCTGTTCAAAGTG < 41bp 0.469633159974022 0.787383571610293 NA NA prediction 0.574767143220587 Functional Gain - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186437940 chr3:186437939 nonsynonymous SNV 0.748 3 20 hm7G_associated_SNPs_15316 0 0 0 0 2 KNG1 chr3:186437894 3'AG 186437894 Downstream 46bp 14687 chr3 186437939 186437939 1 + G T LUAD 186437940 + 186437920 186437960 41 CAAGTACGAAATCAAGGAGGGGGATTGTCCTGTTCAAAGTG CAAGTACGAAATCAAGGAGTGGGATTGTCCTGTTCAAAGTG < 41bp 0.469633159974022 0.787383571610293 NA NA prediction 0.574767143220587 Functional Gain - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186437940 chr3:186437939 nonsynonymous SNV 0.748 3 20 hm7G_associated_SNPs_15316 0 0 0 0 2 KNG1 chr3:186438004 5'GT 186438004 Upstream 66bp 14688 chr20 45355581 45355581 1 + G T LUAD 45355582 + 45355562 45355602 41 TTCTGCAACAGCTTCAACTGGGCGGCCAACCTCTTCATCAG TTCTGCAACAGCTTCAACTTGGCGGCCAACCTCTTCATCAG < 41bp 0.462910392637673 0.787364371597724 NA NA prediction 0.574728743195448 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355582 chr20:45355581 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_15320 0 0 0 0 2 SLC2A10 chr20:45355503 3'AG 45355503 Downstream 79bp 14689 chr20 45355581 45355581 1 + G T LUAD 45355582 + 45355562 45355602 41 TTCTGCAACAGCTTCAACTGGGCGGCCAACCTCTTCATCAG TTCTGCAACAGCTTCAACTTGGCGGCCAACCTCTTCATCAG < 41bp 0.462910392637673 0.787364371597724 NA NA prediction 0.574728743195448 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355582 chr20:45355581 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_15320 0 0 0 0 2 SLC2A10 chr20:45355625 5'GT 45355625 Upstream 45bp 14690 chr20 43936878 43936878 1 + G T GBM 43936879 + 43936859 43936899 41 CGACAGGCGGAGCCTCCCGGGCACTTGGACCAGGTAACGGC CGACAGGCGGAGCCTCCCGTGCACTTGGACCAGGTAACGGC < 41bp 0.451393079307888 0.787361150680136 NA NA prediction 0.574722301360273 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936879 chr20:43936878 nonsynonymous SNV 0.083 2 20 hm7G_associated_SNPs_15321 0 0 0 0 2 RBPJL chr20:43936783 3'AG 43936783 Downstream 96bp 14691 chr20 43936878 43936878 1 + G T GBM 43936879 + 43936859 43936899 41 CGACAGGCGGAGCCTCCCGGGCACTTGGACCAGGTAACGGC CGACAGGCGGAGCCTCCCGTGCACTTGGACCAGGTAACGGC < 41bp 0.451393079307888 0.787361150680136 NA NA prediction 0.574722301360273 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936879 chr20:43936878 nonsynonymous SNV 0.083 2 20 hm7G_associated_SNPs_15321 0 0 0 0 2 RBPJL chr20:43936891 5'GT 43936891 Upstream 14bp 14692 chr2 208432228 208432228 1 + G T LUSC 208432229 + 208432209 208432249 41 AAGATTCACAGGAGTCAGTGGATAGTGTAACTGATTCCCAA AAGATTCACAGGAGTCAGTTGATAGTGTAACTGATTCCCAA < 41bp 0.480513020232216 0.787341808966619 NA NA prediction 0.574683617933238 Functional Gain - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208432229 chr2:208432228 synonymous SNV . 0 20 hm7G_associated_SNPs_15322 0 0 1 0 2 CREB1 chr2:208432187 3'AG 208432187 Downstream 42bp 14693 chr2 208432228 208432228 1 + G T LUSC 208432229 + 208432209 208432249 41 AAGATTCACAGGAGTCAGTGGATAGTGTAACTGATTCCCAA AAGATTCACAGGAGTCAGTTGATAGTGTAACTGATTCCCAA < 41bp 0.480513020232216 0.787341808966619 NA NA prediction 0.574683617933238 Functional Gain - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208432229 chr2:208432228 synonymous SNV . 0 20 hm7G_associated_SNPs_15322 0 0 1 0 2 CREB1 chr2:208432287 5'GT 208432287 Upstream 60bp 14694 chr22 39123346 39123346 1 + G T LUSC 39123347 + 39123327 39123367 41 CAATTAGCCCGCGCTACCAGGCCATGGGTAGGTGTCTAAGG CAATTAGCCCGCGCTACCATGCCATGGGTAGGTGTCTAAGG < 41bp 0.5558988279001 0.843239531158533 NA NA prediction 0.574681406516865 Functional Gain - GTPBP1 ENSG00000100226 CDS Human protein_coding chr22:39123347 chr22:39123346 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15324 0 0 1 0 1 GTPBP1 chr22:39123353 5'GT 39123353 Upstream 8bp 14695 chr3 40464602 40464602 1 + G T GBM 40464603 + 40464583 40464623 41 TTATCAGCCAAAGATTAAAGGGCCATTTGTGGTAAGAGCAA TTATCAGCCAAAGATTAAATGGCCATTTGTGGTAAGAGCAA < 41bp 0.539638668692172 0.82697735798346 NA NA prediction 0.574677378582576 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40464603 chr3:40464602 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_15325 0 0 0 0 1 ENTPD3 chr3:40464613 5'GT 40464613 Upstream 12bp 14696 chr8 22969319 22969319 1 + G T COAD 22969320 + 22969300 22969340 41 AACAGAGGCACAGCTTCAAGGGGGAGGAGTGTCCAGCAGGT AACAGAGGCACAGCTTCAATGGGGAGGAGTGTCCAGCAGGT < 41bp 0.469554830602745 0.787337533213946 NA NA prediction 0.574675066427893 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969320 chr8:22969319 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_15326 0 0 0 0 2 TNFRSF10C chr8:22969233 3'AG 22969233 Downstream 87bp 14697 chr8 22969319 22969319 1 + G T COAD 22969320 + 22969300 22969340 41 AACAGAGGCACAGCTTCAAGGGGGAGGAGTGTCCAGCAGGT AACAGAGGCACAGCTTCAATGGGGAGGAGTGTCCAGCAGGT < 41bp 0.469554830602745 0.787337533213946 NA NA prediction 0.574675066427893 Functional Gain - TNFRSF10C ENSG00000173535 CDS Human protein_coding chr8:22969320 chr8:22969319 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_15326 0 0 0 0 2 TNFRSF10C chr8:22969338 5'GT 22969338 Upstream 20bp 14698 chrX 22237175 22237175 1 + G T UCEC 22237176 + 22237156 22237196 41 TCTGAGTTATGGTGCTATAGGAGTAATTGTCGGACATGAAT TCTGAGTTATGGTGCTATATGAGTAATTGTCGGACATGAAT < 41bp 0.519508385669381 0.806806997237519 NA NA prediction 0.574597223136277 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22237176 chrX:22237175 stopgain 1.000 1 20 hm7G_associated_SNPs_15329 0 0 1 0 2 PHEX chrX:22237153 3'AG 22237153 Downstream 23bp 14699 chrX 22237175 22237175 1 + G T UCEC 22237176 + 22237156 22237196 41 TCTGAGTTATGGTGCTATAGGAGTAATTGTCGGACATGAAT TCTGAGTTATGGTGCTATATGAGTAATTGTCGGACATGAAT < 41bp 0.519508385669381 0.806806997237519 NA NA prediction 0.574597223136277 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22237176 chrX:22237175 stopgain 1.000 1 20 hm7G_associated_SNPs_15329 0 0 1 0 2 PHEX chrX:22237220 5'GT 22237220 Upstream 46bp 14700 chr9 131277857 131277857 1 + G T LIHC 131277858 + 131277838 131277878 41 ATGGTACTTCAGTCCTCACGGGGGATCAAAGTGGAAGGCTG ATGGTACTTCAGTCCTCACTGGGGATCAAAGTGGAAGGCTG < 41bp 0.562203354955335 0.849497727031116 NA NA prediction 0.574588744151563 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131277858 chr9:131277857 nonsynonymous SNV 0.931 2 20 hm7G_associated_SNPs_15330 0 0 1 0 2 GLE1 chr9:131277808 3'AG 131277808 Downstream 50bp 14701 chr9 131277857 131277857 1 + G T LIHC 131277858 + 131277838 131277878 41 ATGGTACTTCAGTCCTCACGGGGGATCAAAGTGGAAGGCTG ATGGTACTTCAGTCCTCACTGGGGATCAAAGTGGAAGGCTG < 41bp 0.562203354955335 0.849497727031116 NA NA prediction 0.574588744151563 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131277858 chr9:131277857 nonsynonymous SNV 0.931 2 20 hm7G_associated_SNPs_15330 0 0 1 0 2 GLE1 chr9:131277918 5'GT 131277918 Upstream 62bp 14702 chr2 113764288 113764288 1 + G T LUAD 113764289 + 113764269 113764309 41 CCTGATGTGTGCTAAAGTCGGGGACCAGCCCACACTGCAGC CCTGATGTGTGCTAAAGTCTGGGACCAGCCCACACTGCAGC < 41bp 0.492922409289892 0.787292620776246 NA NA prediction 0.574585241552492 Functional Gain - IL36A ENSG00000136694 CDS Human protein_coding chr2:113764289 chr2:113764288 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_15332 0 0 0 0 1 IL36A chr2:113764314 5'GT 113764314 Upstream 27bp 14703 chr14 23311854 23311854 1 + G T LUSC 23311855 + 23311835 23311875 41 GGCCCATGCCTACTTCCCAGGCCCCAACATTGGAGGAGACA GGCCCATGCCTACTTCCCATGCCCCAACATTGGAGGAGACA < 41bp 0.571243908646414 0.858515767100128 NA NA prediction 0.574543716907427 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23311855 chr14:23311854 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_15334 0 0 0 0 1 MMP14 chr14:23311926 5'GT 23311926 Upstream 73bp 14704 chr8 86360276 86360276 1 + G T LUAD 86360277 + 86360257 86360297 41 TTGCAGATGGCCAAGCTGCGGAGCCTCCTCTCCAGTGCTGA TTGCAGATGGCCAAGCTGCTGAGCCTCCTCTCCAGTGCTGA < 41bp 0.487767192712145 0.787267121168814 NA NA prediction 0.574534242337629 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86360277 chr8:86360276 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_15336 0 0 0 0 1 CA3 chr8:86360263 3'AG 86360263 Downstream 14bp 14705 chr2 32312620 32312620 1 + G T UCEC 32312621 + 32312601 32312641 41 TATTGAAGAACTGGAAAAAGGAATAGCTGTTATAGTTACAG TATTGAAGAACTGGAAAAATGAATAGCTGTTATAGTTACAG < 41bp 0.533316096524519 0.820575375788327 NA NA prediction 0.574518558527618 Functional Gain - SPAST ENSG00000021574 CDS Human protein_coding chr2:32312621 chr2:32312620 stopgain 1.000 1 20 hm7G_associated_SNPs_15337 0 0 1 0 2 SPAST chr2:32312561 3'AG 32312561 Downstream 60bp 14706 chr2 32312620 32312620 1 + G T UCEC 32312621 + 32312601 32312641 41 TATTGAAGAACTGGAAAAAGGAATAGCTGTTATAGTTACAG TATTGAAGAACTGGAAAAATGAATAGCTGTTATAGTTACAG < 41bp 0.533316096524519 0.820575375788327 NA NA prediction 0.574518558527618 Functional Gain - SPAST ENSG00000021574 CDS Human protein_coding chr2:32312621 chr2:32312620 stopgain 1.000 1 20 hm7G_associated_SNPs_15337 0 0 1 0 2 SPAST chr2:32312647 5'GT 32312647 Upstream 28bp 14707 chr2 220402452 220402452 1 + G T UCEC 220402453 + 220402433 220402473 41 TGGGGCTTCAGGAGCTGAAGGAACAGGTGAGGACAAGCTCT TGGGGCTTCAGGAGCTGAATGAACAGGTGAGGACAAGCTCT < 41bp 0.529377979692359 0.81663254764355 NA NA prediction 0.574509135902382 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220402453 chr2:220402452 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15338 0 0 1 0 2 ASIC4 chr2:220402354 3'AG 220402354 Downstream 99bp 14708 chr2 220402452 220402452 1 + G T UCEC 220402453 + 220402433 220402473 41 TGGGGCTTCAGGAGCTGAAGGAACAGGTGAGGACAAGCTCT TGGGGCTTCAGGAGCTGAATGAACAGGTGAGGACAAGCTCT < 41bp 0.529377979692359 0.81663254764355 NA NA prediction 0.574509135902382 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220402453 chr2:220402452 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15338 0 0 1 0 2 ASIC4 chr2:220402458 5'GT 220402458 Upstream 7bp 14709 chr17 27017988 27017988 1 + G T LUAD 27017989 + 27017969 27018009 41 TTGCCCACAGGCGTCCCCAGGGTGAGAGCTATGACCAGGCG TTGCCCACAGGCGTCCCCATGGTGAGAGCTATGACCAGGCG < 41bp 0.561215802392103 0.848467778172498 NA NA prediction 0.57450395156079 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27017989 chr17:27017988 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15339 0 0 1 0 2 SUPT6H chr17:27017939 3'AG 27017939 Downstream 50bp 14710 chr17 27017988 27017988 1 + G T LUAD 27017989 + 27017969 27018009 41 TTGCCCACAGGCGTCCCCAGGGTGAGAGCTATGACCAGGCG TTGCCCACAGGCGTCCCCATGGTGAGAGCTATGACCAGGCG < 41bp 0.561215802392103 0.848467778172498 NA NA prediction 0.57450395156079 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27017989 chr17:27017988 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15339 0 0 1 0 2 SUPT6H chr17:27018081 5'GT 27018081 Upstream 94bp 14711 chr2 27259640 27259640 1 + G T LAML 27259641 + 27259621 27259661 41 CCTTTGCCATCACATACCTGGATCGGCTGCTCCTGTGAGTA CCTTTGCCATCACATACCTTGATCGGCTGCTCCTGTGAGTA < 41bp 0.451213041121284 0.787249078961466 NA NA prediction 0.574498157922932 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27259641 chr2:27259640 synonymous SNV . 0 20 hm7G_associated_SNPs_15340 0 0 1 0 1 TMEM214 chr2:27259654 5'GT 27259654 Upstream 15bp 14712 chr1 179033141 179033141 1 + G T UCEC 179033142 + 179033122 179033162 41 CTGATGGAGACATAATGGAGGGATCTGTCACACTTTGGCTT CTGATGGAGACATAATGGATGGATCTGTCACACTTTGGCTT < 41bp 0.548766612293252 0.83600477922668 NA NA prediction 0.574476333866855 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179033142 chr1:179033141 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_15342 0 0 1 0 2 FAM20B chr1:179033062 3'AG 179033062 Downstream 80bp 14713 chr1 179033141 179033141 1 + G T UCEC 179033142 + 179033122 179033162 41 CTGATGGAGACATAATGGAGGGATCTGTCACACTTTGGCTT CTGATGGAGACATAATGGATGGATCTGTCACACTTTGGCTT < 41bp 0.548766612293252 0.83600477922668 NA NA prediction 0.574476333866855 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179033142 chr1:179033141 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_15342 0 0 1 0 2 FAM20B chr1:179033233 5'GT 179033233 Upstream 93bp 14714 chr1 215792243 215792243 1 + G T LUAD 215792244 + 215792224 215792264 41 GCAGAATATGTGAGATCCAGGCTGTTGACTGTACTACAATA GCAGAATATGTGAGATCCATGCTGTTGACTGTACTACAATA < 41bp 0.5391954455398 0.826433059082012 NA NA prediction 0.574475227084424 Functional Gain - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215792244 chr1:215792243 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_15343 0 0 1 0 1 KCTD3 chr1:215792228 3'AG 215792228 Downstream 16bp 14715 chr9 139233032 139233032 1 + G T LUSC 139233033 + 139233013 139233053 41 AAGACGCTGCAACTGTCTCGGCAGCTCAGGGACCAGGCAGT AAGACGCTGCAACTGTCTCTGCAGCTCAGGGACCAGGCAGT < 41bp 0.56797282523436 0.855204017970376 NA NA prediction 0.574462385472032 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139233033 chr9:139233032 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_15345 0 0 1 0 1 GPSM1 chr9:139233012 3'AG 139233012 Downstream 21bp 14716 chr15 55632859 55632859 1 + G T rs678892 55632860 + 55632840 55632880 41 TTTAACGTGCTGCAGAACTGGGGAACATTTTATGGTTCTCA TTTAACGTGCTGCAGAACTTGGGAACATTTTATGGTTCTCA < 41bp 0.478921369834509 0.787230148408865 NA NA prediction 0.574460296817729 Functional Gain - PIGB ENSG00000069943 CDS Human protein_coding chr15:55632860 chr15:55632859 nonsynonymous SNV 0.912 0 20 hm7G_associated_SNPs_15347 0 0 0 0 1 PIGB chr15:55632810 3'AG 55632810 Downstream 50bp 14717 chr13 41381542 41381542 1 + G T COAD 41381543 + 41381523 41381563 41 AGGCTATTTCTTCTTCTTCGGTGGCTATGAACTGAGCCGGT AGGCTATTTCTTCTTCTTCTGTGGCTATGAACTGAGCCGGT < 41bp 0.5317196413211 0.818948839176014 NA NA prediction 0.574458395709829 Functional Gain - SLC25A15 ENSG00000102743 CDS Human protein_coding chr13:41381543 chr13:41381542 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_15348 0 0 0 0 1 SLC25A15 chr13:41381599 5'GT 41381599 Upstream 58bp 14718 chr3 183952539 183952539 1 + G T ACC 183952540 + 183952520 183952560 41 AGGGACAGTGATGGGGACCGGCAGGTACCGCCATAGGAGCC AGGGACAGTGATGGGGACCTGCAGGTACCGCCATAGGAGCC < 41bp 0.545586574627429 0.832805630526701 NA NA prediction 0.574438111798544 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183952540 chr3:183952539 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15349 0 0 0 0 1 VWA5B2 chr3:183952543 5'GT 183952543 Upstream 5bp 14719 chr10 60588583 60588583 1 + G T LUAD 60588584 + 60588564 60588604 41 ACGCACCTCTTTCCTGGAAGGTGGAGCGAGTGGAAGGCTAC ACGCACCTCTTTCCTGGAATGTGGAGCGAGTGGAAGGCTAC < 41bp 0.500946996248411 0.788163038849835 NA NA prediction 0.574432085202848 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60588584 chr10:60588583 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_15350 0 0 0 0 1 BICC1 chr10:60588521 3'AG 60588521 Downstream 63bp 14720 chr20 47691896 47691896 1 + G T UCEC 47691897 + 47691877 47691917 41 TGCTTGTGATCTGGTACGAGGATTATGCAAGTTTTTTGAGG TGCTTGTGATCTGGTACGATGATTATGCAAGTTTTTTGAGG < 41bp 0.537577372918832 0.824755739829628 NA NA prediction 0.574356733821592 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47691897 chr20:47691896 stopgain 1.000 1 20 hm7G_associated_SNPs_15353 0 0 1 0 1 CSE1L chr20:47691855 3'AG 47691855 Downstream 42bp 14721 chr5 173069 173069 1 + G T THCA 173070 + 173050 173090 41 TGAGTTTATCGTTTGCTGCGGGAGGAAGAAGTATCTGAGGC TGAGTTTATCGTTTGCTGCTGGAGGAAGAAGTATCTGAGGC < 41bp 0.546133883623374 0.833282612070754 NA NA prediction 0.57429745689476 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:173070 chr5:173069 nonsynonymous SNV 0.076 3 20 hm7G_associated_SNPs_15355 0 0 1 0 1 PLEKHG4B chr5:173012 3'AG 173012 Downstream 58bp 14722 chr9 96436116 96436116 1 + G T LUAD 96436117 + 96436097 96436137 41 AGGAAGAGCAGGACCACCTGGATGCCTGCTTCAAGGACTCA AGGAAGAGCAGGACCACCTTGATGCCTGCTTCAAGGACTCA < 41bp 0.448501153168858 0.787147764193161 NA NA prediction 0.574295528386323 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96436117 chr9:96436116 synonymous SNV . 0 20 hm7G_associated_SNPs_15356 0 0 1 0 1 PHF2 chr9:96436144 5'GT 96436144 Upstream 29bp 14723 chr1 158990203 158990203 1 + G T COAD 158990204 + 158990184 158990224 41 AATGGATGTAGTGGGGACAGGACAATGTCACAATATCCCCT AATGGATGTAGTGGGGACATGACAATGTCACAATATCCCCT < 41bp 0.48613321945484 0.787145413226649 NA NA prediction 0.574290826453299 Functional Gain - IFI16 ENSG00000163565 CDS Human protein_coding chr1:158990204 chr1:158990203 stopgain 0.059 0 20 hm7G_associated_SNPs_15357 0 0 0 0 1 IFI16 chr1:158990131 3'AG 158990131 Downstream 73bp 14724 chr1 2426323 2426323 1 + G T STAD 2426324 + 2426304 2426344 41 GAAGAGGACGTGGAGTCTGGGGAGGATGCCGGGGCCAGCAG GAAGAGGACGTGGAGTCTGTGGAGGATGCCGGGGCCAGCAG < 41bp 0.559829661044326 0.846973462407129 NA NA prediction 0.574287602725607 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2426324 chr1:2426323 nonsynonymous SNV 0.029 1 20 hm7G_associated_SNPs_15359 0 0 0 0 2 PLCH2 chr1:2426295 3'AG 2426295 Downstream 29bp 14725 chr1 2426323 2426323 1 + G T STAD 2426324 + 2426304 2426344 41 GAAGAGGACGTGGAGTCTGGGGAGGATGCCGGGGCCAGCAG GAAGAGGACGTGGAGTCTGTGGAGGATGCCGGGGCCAGCAG < 41bp 0.559829661044326 0.846973462407129 NA NA prediction 0.574287602725607 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2426324 chr1:2426323 nonsynonymous SNV 0.029 1 20 hm7G_associated_SNPs_15359 0 0 0 0 2 PLCH2 chr1:2426387 5'GT 2426387 Upstream 65bp 14726 chr18 21083594 21083594 1 + G T LGG 21083595 + 21083575 21083615 41 CGCCCGCCATGGGCGAGGAGGACTACTATCTGGAGCTGTGC CGCCCGCCATGGGCGAGGATGACTACTATCTGGAGCTGTGC < 41bp 0.539079332498475 0.826214897009439 NA NA prediction 0.574271129021927 Functional Gain - C18orf8 ENSG00000141452 CDS Human protein_coding chr18:21083595 chr18:21083594 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_15360 0 0 1 0 1 C18orf8 chr18:21083684 5'GT 21083684 Upstream 91bp 14727 chr19 10663608 10663608 1 + G T BLCA 10663609 + 10663589 10663629 41 GGTACCCCATGTTCACCCTGGCCGAGGGCCATGCTCAGGAC GGTACCCCATGTTCACCCTTGCCGAGGGCCATGCTCAGGAC < 41bp 0.54228484779798 0.82941778198254 NA NA prediction 0.57426586836912 Functional Gain - ATG4D ENSG00000130734 CDS Human protein_coding chr19:10663609 chr19:10663608 synonymous SNV . 0 20 hm7G_associated_SNPs_15361 0 0 1 0 1 ATG4D chr19:10663561 3'AG 10663561 Downstream 48bp 14728 chr18 56620951 56620951 1 + G T LUAD 56620952 + 56620932 56620972 41 CAAGAAAGTGGCCAGTCCTGGGTGGACGTGTTGGGAGTGTG CAAGAAAGTGGCCAGTCCTTGGTGGACGTGTTGGGAGTGTG < 41bp 0.560035709232731 0.847148793029613 NA NA prediction 0.574226167593763 Functional Gain - ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56620952 chr18:56620951 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_15363 0 0 0 0 1 ZNF532 chr18:56621031 5'GT 56621031 Upstream 81bp 14729 chr12 122684849 122684849 1 + G T LUAD 122684850 + 122684830 122684870 41 AAGGCCTTCCTGCTGGCGGGGACCACCGTGACCATCGTGGA AAGGCCTTCCTGCTGGCGGTGACCACCGTGACCATCGTGGA < 41bp 0.559210617739522 0.84630538707994 NA NA prediction 0.574189538680835 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122684850 chr12:122684849 nonsynonymous SNV 0.482 5 20 hm7G_associated_SNPs_15364 0 0 0 0 1 LRRC43 chr12:122684877 5'GT 122684877 Upstream 29bp 14730 chr4 69973957 69973957 1 + G T UCEC 69973958 + 69973938 69973978 41 TTGCTCACATGAAGGCCAGGGGAGCAGCTGTTAGAGTGGAC TTGCTCACATGAAGGCCAGTGGAGCAGCTGTTAGAGTGGAC < 41bp 0.545409677955544 0.832502402803994 NA NA prediction 0.5741854496969 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69973958 chr4:69973957 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_15365 0 0 1 0 1 UGT2B7 chr4:69974040 5'GT 69974040 Upstream 84bp 14731 chr6 170878836 170878836 1 + G T GBM 170878837 + 170878817 170878857 41 GTTTCCTATAAGGTTAGAAGGCCTTGTGCTCACCCACCAAC GTTTCCTATAAGGTTAGAATGCCTTGTGCTCACCCACCAAC < 41bp 0.464568503177093 0.787085709786305 NA NA prediction 0.574171419572609 Functional Gain - TBP ENSG00000112592 CDS Human protein_coding chr6:170878837 chr6:170878836 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15367 0 0 1 0 1 TBP chr6:170878867 5'GT 170878867 Upstream 32bp 14732 chr3 151535290 151535290 1 + G T THCA 151535291 + 151535271 151535311 41 TTCAACAACATTCTTGTTCGGGTATATGTGCCAAAGAGAAA TTCAACAACATTCTTGTTCTGGTATATGTGCCAAAGAGAAA < 41bp 0.523330187545711 0.81040913981605 NA NA prediction 0.574157904540677 Functional Gain - AADAC ENSG00000114771 CDS Human protein_coding chr3:151535291 chr3:151535290 nonsynonymous SNV 0.881 3 20 hm7G_associated_SNPs_15368 0 0 0 0 1 AADAC chr3:151535376 5'GT 151535376 Upstream 87bp 14733 chr10 95395343 95395343 1 + G T UCEC 95395344 + 95395324 95395364 41 ACAGAAAGGACATTGCTCAGGAAATGCTCATGAACCAAACC ACAGAAAGGACATTGCTCATGAAATGCTCATGAACCAAACC < 41bp 0.531321269497427 0.818369554489657 NA NA prediction 0.57409656998446 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95395344 chr10:95395343 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_15370 0 0 0 0 2 PDE6C chr10:95395254 3'AG 95395254 Downstream 90bp 14734 chr10 95395343 95395343 1 + G T UCEC 95395344 + 95395324 95395364 41 ACAGAAAGGACATTGCTCAGGAAATGCTCATGAACCAAACC ACAGAAAGGACATTGCTCATGAAATGCTCATGAACCAAACC < 41bp 0.531321269497427 0.818369554489657 NA NA prediction 0.57409656998446 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95395344 chr10:95395343 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_15370 0 0 0 0 2 PDE6C chr10:95395397 5'GT 95395397 Upstream 55bp 14735 chr22 29708172 29708172 1 + G T STAD 29708173 + 29708153 29708193 41 CGTCCTGGGTGGCAAATGTGGCCAACCTGGGGACTCTGGCC CGTCCTGGGTGGCAAATGTTGCCAACCTGGGGACTCTGGCC < 41bp 0.459748474411923 0.787039432168239 NA NA prediction 0.574078864336479 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29708173 chr22:29708172 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15371 0 0 1 0 1 GAS2L1 chr22:29708132 3'AG 29708132 Downstream 41bp 14736 chr5 129040021 129040021 1 + G T BRCA 129040022 + 129040002 129040042 41 TCCTCTCTACCAGACCCAGGGAGGCTGAAGACTGTGAGGAT TCCTCTCTACCAGACCCAGTGAGGCTGAAGACTGTGAGGAT < 41bp 0.476100515305018 0.787035931285561 NA NA prediction 0.574071862571121 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:129040022 chr5:129040021 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15372 0 0 0 2 1 ADAMTS19 chr5:129040084 5'GT 129040084 Upstream 64bp 14737 chr10 104139663 104139663 1 + G T UCEC 104139664 + 104139644 104139684 41 ACATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGACCCGG ACATCAGCCCTGCAGATGTTGGTGGGATGGAGGAGACCCGG < 41bp 0.45878529684913 0.787030831428417 NA NA prediction 0.574061662856835 Functional Gain - GBF1 ENSG00000107862 CDS Human protein_coding chr10:104139664 chr10:104139663 synonymous SNV . 0 20 hm7G_associated_SNPs_15373 0 0 1 0 2 GBF1 chr10:104139610 3'AG 104139610 Downstream 54bp 14738 chr10 104139663 104139663 1 + G T UCEC 104139664 + 104139644 104139684 41 ACATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGACCCGG ACATCAGCCCTGCAGATGTTGGTGGGATGGAGGAGACCCGG < 41bp 0.45878529684913 0.787030831428417 NA NA prediction 0.574061662856835 Functional Gain - GBF1 ENSG00000107862 CDS Human protein_coding chr10:104139664 chr10:104139663 synonymous SNV . 0 20 hm7G_associated_SNPs_15373 0 0 1 0 2 GBF1 chr10:104139711 5'GT 104139711 Upstream 49bp 14739 chr19 36363488 36363488 1 + G T UCEC 36363489 + 36363469 36363509 41 GGGCCAAGATGGACCTGGAGGAGCGTAGGATGCGCCAGATT GGGCCAAGATGGACCTGGATGAGCGTAGGATGCGCCAGATT < 41bp 0.564124605596177 0.851153071287217 NA NA prediction 0.57405693138208 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36363489 chr19:36363488 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_15374 0 0 0 0 1 APLP1 chr19:36363515 5'GT 36363515 Upstream 28bp 14740 chrX 128901585 128901585 1 + G T UCEC 128901586 + 128901566 128901606 41 TCTGGGCTCCCAGTACCCAGGGAGCTACCTGACCTTTGAAG TCTGGGCTCCCAGTACCCATGGAGCTACCTGACCTTTGAAG < 41bp 0.457046987217687 0.787008956586177 NA NA prediction 0.574017913172354 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128901586 chrX:128901585 nonsynonymous SNV 0.576 2 20 hm7G_associated_SNPs_15375 0 0 0 0 2 XPNPEP2 chrX:128901579 3'AG 128901579 Downstream 7bp 14741 chrX 128901585 128901585 1 + G T UCEC 128901586 + 128901566 128901606 41 TCTGGGCTCCCAGTACCCAGGGAGCTACCTGACCTTTGAAG TCTGGGCTCCCAGTACCCATGGAGCTACCTGACCTTTGAAG < 41bp 0.457046987217687 0.787008956586177 NA NA prediction 0.574017913172354 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128901586 chrX:128901585 nonsynonymous SNV 0.576 2 20 hm7G_associated_SNPs_15375 0 0 0 0 2 XPNPEP2 chrX:128901668 5'GT 128901668 Upstream 84bp 14742 chr19 49898468 49898468 1 + G T BRCA 49898469 + 49898449 49898489 41 AACAGCCTGGACCCCAATGGGGAGGGCCCTAAGGCCACTGT AACAGCCTGGACCCCAATGTGGAGGGCCCTAAGGCCACTGT < 41bp 0.456752059780488 0.787006506054207 NA NA prediction 0.574013012108414 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49898469 chr19:49898468 nonsynonymous SNV 0.422 3 20 hm7G_associated_SNPs_15376 0 0 0 0 1 CCDC155 chr19:49898549 5'GT 49898549 Upstream 82bp 14743 chr8 70488386 70488386 1 + G T LIHC 70488387 + 70488367 70488407 41 GCTCTTCCCCCTCGTGGCAGGCCATGCATGAGCCTCGGACT GCTCTTCCCCCTCGTGGCATGCCATGCATGAGCCTCGGACT < 41bp 0.459530326333933 0.787001881720185 NA NA prediction 0.574003763440369 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70488387 chr8:70488386 nonsynonymous SNV 0.945 3 20 hm7G_associated_SNPs_15377 0 0 0 0 1 SULF1 chr8:70488444 5'GT 70488444 Upstream 59bp 14744 chr7 77265139 77265139 1 + G T UCEC 77265140 + 77265120 77265160 41 GGAGTGAACTTCAAAGTCAGGAACGATCTGAACAAAAAAAG GGAGTGAACTTCAAAGTCATGAACGATCTGAACAAAAAAAG < 41bp 0.529942121427056 0.816941014130767 NA NA prediction 0.573997785407423 Functional Gain - PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77265140 chr7:77265139 nonsynonymous SNV 0.768 2 20 hm7G_associated_SNPs_15378 0 0 1 0 2 PTPN12 chr7:77265099 3'AG 77265099 Downstream 41bp 14745 chr7 77265139 77265139 1 + G T UCEC 77265140 + 77265120 77265160 41 GGAGTGAACTTCAAAGTCAGGAACGATCTGAACAAAAAAAG GGAGTGAACTTCAAAGTCATGAACGATCTGAACAAAAAAAG < 41bp 0.529942121427056 0.816941014130767 NA NA prediction 0.573997785407423 Functional Gain - PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77265140 chr7:77265139 nonsynonymous SNV 0.768 2 20 hm7G_associated_SNPs_15378 0 0 1 0 2 PTPN12 chr7:77265166 5'GT 77265166 Upstream 28bp 14746 chr10 121692557 121692557 1 + G T UCEC 121692558 + 121692538 121692578 41 CAGATTTTTCCAAGGATGAGGACTACTTAGGAAAGGTTGGA CAGATTTTTCCAAGGATGATGACTACTTAGGAAAGGTTGGA < 41bp 0.535497262327729 0.822491764994727 NA NA prediction 0.573989005333996 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121692558 chr10:121692557 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_15380 0 0 1 0 1 SEC23IP chr10:121692517 3'AG 121692517 Downstream 41bp 14747 chr12 7470685 7470685 1 + G T UCEC 7470686 + 7470666 7470706 41 CTGACACGGGCTGGGTCAAGGCCGCCATTGGCAGTGTGTTT CTGACACGGGCTGGGTCAATGCCGCCATTGGCAGTGTGTTT < 41bp 0.553100410938102 0.840094578512925 NA NA prediction 0.573988335149647 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7470686 chr12:7470685 nonsynonymous SNV 0.965 3 20 hm7G_associated_SNPs_15381 0 0 0 0 2 ACSM4 chr12:7470622 3'AG 7470622 Downstream 64bp 14748 chr12 7470685 7470685 1 + G T UCEC 7470686 + 7470666 7470706 41 CTGACACGGGCTGGGTCAAGGCCGCCATTGGCAGTGTGTTT CTGACACGGGCTGGGTCAATGCCGCCATTGGCAGTGTGTTT < 41bp 0.553100410938102 0.840094578512925 NA NA prediction 0.573988335149647 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7470686 chr12:7470685 nonsynonymous SNV 0.965 3 20 hm7G_associated_SNPs_15381 0 0 0 0 2 ACSM4 chr12:7470778 5'GT 7470778 Upstream 94bp 14749 chr11 124013199 124013199 1 + G T LUSC 124013200 + 124013180 124013220 41 TTACCACCAAAATGCAAATGGTTCCTGGGATCTGAATGAAG TTACCACCAAAATGCAAATTGTTCCTGGGATCTGAATGAAG < 41bp 0.479508090132508 0.786988530075561 NA NA prediction 0.573977060151122 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124013200 chr11:124013199 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15382 0 0 0 0 2 VWA5A chr11:124013149 3'AG 124013149 Downstream 51bp 14750 chr11 124013199 124013199 1 + G T LUSC 124013200 + 124013180 124013220 41 TTACCACCAAAATGCAAATGGTTCCTGGGATCTGAATGAAG TTACCACCAAAATGCAAATTGTTCCTGGGATCTGAATGAAG < 41bp 0.479508090132508 0.786988530075561 NA NA prediction 0.573977060151122 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124013200 chr11:124013199 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15382 0 0 0 0 2 VWA5A chr11:124013279 5'GT 124013279 Upstream 81bp 14751 chr12 123072316 123072316 1 + G T ESCA 123072317 + 123072297 123072337 41 CCCTGCTTCAGAATCTTCAGGAATCTAGCCAGTGGGAGCTA CCCTGCTTCAGAATCTTCATGAATCTAGCCAGTGGGAGCTA < 41bp 0.483406693465121 0.786982963611287 NA NA prediction 0.573965927222574 Functional Gain - KNTC1 ENSG00000184445 CDS Human protein_coding chr12:123072317 chr12:123072316 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15383 0 0 1 0 1 KNTC1 chr12:123072258 3'AG 123072258 Downstream 59bp 14752 chr16 311384 311384 1 + G T LUSC 311385 + 311365 311405 41 CCGTGTGCTTGATTCTAGGGGAAACCCTGTGGAACCACAGC CCGTGTGCTTGATTCTAGGTGAAACCCTGTGGAACCACAGC < 41bp 0.45841905869578 0.786970965907521 NA NA prediction 0.573941931815042 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:311385 chr16:311384 synonymous SNV . 0 20 hm7G_associated_SNPs_15387 0 0 1 0 1 FAM234A chr16:311383 3'AG 311383 Downstream 2bp 14753 chr10 118386413 118386413 1 + G T LUAD 118386414 + 118386394 118386434 41 AGGTGAACTGCATCTGTGTGGACTGGAGGCACGGGTCCCGG AGGTGAACTGCATCTGTGTTGACTGGAGGCACGGGTCCCGG < 41bp 0.515162173276084 0.802119195449958 NA NA prediction 0.573914044347749 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118386414 chr10:118386413 synonymous SNV . 0 20 hm7G_associated_SNPs_15392 0 0 0 0 2 PNLIPRP2 chr10:118386375 3'AG 118386375 Downstream 39bp 14754 chr10 118386413 118386413 1 + G T LUAD 118386414 + 118386394 118386434 41 AGGTGAACTGCATCTGTGTGGACTGGAGGCACGGGTCCCGG AGGTGAACTGCATCTGTGTTGACTGGAGGCACGGGTCCCGG < 41bp 0.515162173276084 0.802119195449958 NA NA prediction 0.573914044347749 Functional Gain - PNLIPRP2 ENSG00000165862 CDS Human other chr10:118386414 chr10:118386413 synonymous SNV . 0 20 hm7G_associated_SNPs_15392 0 0 0 0 2 PNLIPRP2 chr10:118386509 5'GT 118386509 Upstream 97bp 14755 chr20 60773699 60773699 1 + G T UCEC 60773700 + 60773680 60773720 41 TGTTCCCCAGGTCCCCGTGGGCACGCTGGTGAAGGAGGGAG TGTTCCCCAGGTCCCCGTGTGCACGCTGGTGAAGGAGGGAG < 41bp 0.558308304103425 0.845260138124538 NA NA prediction 0.573903668042227 Functional Gain - MTG2 ENSG00000101181 CDS Human protein_coding chr20:60773700 chr20:60773699 nonsynonymous SNV 0.270 4 20 hm7G_associated_SNPs_15393 0 0 1 0 1 MTG2 chr20:60773690 3'AG 60773690 Downstream 10bp 14756 chr20 30065698 30065698 1 + G T LUAD 30065699 + 30065679 30065719 41 TGGTGGTCGTGGACACCTGGGAGGCCGAGAAACTGGTATGG TGGTGGTCGTGGACACCTGTGAGGCCGAGAAACTGGTATGG < 41bp 0.546045772681556 0.832994286011638 NA NA prediction 0.573897026660164 Functional Gain - REM1 ENSG00000088320 CDS Human protein_coding chr20:30065699 chr20:30065698 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15394 0 0 0 0 2 REM1 chr20:30065631 3'AG 30065631 Downstream 68bp 14757 chr20 30065698 30065698 1 + G T LUAD 30065699 + 30065679 30065719 41 TGGTGGTCGTGGACACCTGGGAGGCCGAGAAACTGGTATGG TGGTGGTCGTGGACACCTGTGAGGCCGAGAAACTGGTATGG < 41bp 0.546045772681556 0.832994286011638 NA NA prediction 0.573897026660164 Functional Gain - REM1 ENSG00000088320 CDS Human protein_coding chr20:30065699 chr20:30065698 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15394 0 0 0 0 2 REM1 chr20:30065713 5'GT 30065713 Upstream 16bp 14758 chr7 63529319 63529319 1 + G T UCEC 63529320 + 63529300 63529340 41 AATTCTCCCCAGAAGAGTGGGAATGCCTGGACTCTGCTCAG AATTCTCCCCAGAAGAGTGTGAATGCCTGGACTCTGCTCAG < 41bp 0.479171846554945 0.786940506688655 NA NA prediction 0.57388101337731 Functional Gain - ZNF727 ENSG00000257482 CDS Human other chr7:63529320 chr7:63529319 nonsynonymous SNV 0.259 2 20 hm7G_associated_SNPs_15396 0 0 0 0 2 ZNF727 chr7:63529269 3'AG 63529269 Downstream 51bp 14759 chr7 63529319 63529319 1 + G T UCEC 63529320 + 63529300 63529340 41 AATTCTCCCCAGAAGAGTGGGAATGCCTGGACTCTGCTCAG AATTCTCCCCAGAAGAGTGTGAATGCCTGGACTCTGCTCAG < 41bp 0.479171846554945 0.786940506688655 NA NA prediction 0.57388101337731 Functional Gain - ZNF727 ENSG00000257482 CDS Human other chr7:63529320 chr7:63529319 nonsynonymous SNV 0.259 2 20 hm7G_associated_SNPs_15396 0 0 0 0 2 ZNF727 chr7:63529395 5'GT 63529395 Upstream 77bp 14760 chr17 45419355 45419355 1 + G T LUAD 45419356 + 45419336 45419376 41 TCAGGAGAAAAAAAAGTTGGGAGAAAGAGTTTACAAGTACA TCAGGAGAAAAAAAAGTTGTGAGAAAGAGTTTACAAGTACA < 41bp 0.476884430108612 0.786939183318294 NA NA prediction 0.573878366636588 Functional Gain - EFCAB13 ENSG00000178852 CDS Human protein_coding chr17:45419356 chr17:45419355 nonsynonymous SNV 0.295 0 20 hm7G_associated_SNPs_15397 0 0 1 0 2 EFCAB13 chr17:45419287 3'AG 45419287 Downstream 69bp 14761 chr17 45419355 45419355 1 + G T LUAD 45419356 + 45419336 45419376 41 TCAGGAGAAAAAAAAGTTGGGAGAAAGAGTTTACAAGTACA TCAGGAGAAAAAAAAGTTGTGAGAAAGAGTTTACAAGTACA < 41bp 0.476884430108612 0.786939183318294 NA NA prediction 0.573878366636588 Functional Gain - EFCAB13 ENSG00000178852 CDS Human protein_coding chr17:45419356 chr17:45419355 nonsynonymous SNV 0.295 0 20 hm7G_associated_SNPs_15397 0 0 1 0 2 EFCAB13 chr17:45419398 5'GT 45419398 Upstream 44bp 14762 chr22 41616814 41616814 1 + G T UCEC 41616815 + 41616795 41616835 41 GGTGCAACCTGGGAACAGTGGATGTCCACCCCATTGGCTGG GGTGCAACCTGGGAACAGTTGATGTCCACCCCATTGGCTGG < 41bp 0.459735560678178 0.786927748103443 NA NA prediction 0.573855496206886 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41616815 chr22:41616814 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_15398 0 0 1 0 1 L3MBTL2 chr22:41616872 5'GT 41616872 Upstream 59bp 14763 chr22 50584232 50584232 1 + G T UCEC 50584233 + 50584213 50584253 41 AGGGCTGTTTTACCAAATAGGAGTGAGGTGAGCCCCGGGCA AGGGCTGTTTTACCAAATATGAGTGAGGTGAGCCCCGGGCA < 41bp 0.552604314844999 0.839510965222989 NA NA prediction 0.573813300755979 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50584233 chr22:50584232 stopgain 0.991 1 20 hm7G_associated_SNPs_15399 0 0 0 0 1 MOV10L1 chr22:50584239 5'GT 50584239 Upstream 8bp 14764 chr17 27068100 27068100 1 + G T UCEC 27068101 + 27068081 27068121 41 TCCTCTCCCCCATAGCCTCGGGTGATTGCTACACTTTTGGC TCCTCTCCCCCATAGCCTCTGGTGATTGCTACACTTTTGGC < 41bp 0.553575818492335 0.840475298164891 NA NA prediction 0.573798959345113 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068101 chr17:27068100 synonymous SNV . 0 20 hm7G_associated_SNPs_15400 0 0 0 0 1 NEK8 chr17:27068096 3'AG 27068096 Downstream 5bp 14765 chr12 105534742 105534742 1 + G T LIHC 105534743 + 105534723 105534763 41 TGCTCTCTGCTCTAGTTTTGGCTGAAAACACTCTAAATGGA TGCTCTCTGCTCTAGTTTTTGCTGAAAACACTCTAAATGGA < 41bp 0.484508858886022 0.786892475088335 NA NA prediction 0.57378495017667 Functional Gain - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105534743 chr12:105534742 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15403 0 0 1 0 2 WASHC4 chr12:105534677 3'AG 105534677 Downstream 66bp 14766 chr12 105534742 105534742 1 + G T LIHC 105534743 + 105534723 105534763 41 TGCTCTCTGCTCTAGTTTTGGCTGAAAACACTCTAAATGGA TGCTCTCTGCTCTAGTTTTTGCTGAAAACACTCTAAATGGA < 41bp 0.484508858886022 0.786892475088335 NA NA prediction 0.57378495017667 Functional Gain - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105534743 chr12:105534742 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15403 0 0 1 0 2 WASHC4 chr12:105534823 5'GT 105534823 Upstream 82bp 14767 chr17 686509 686509 1 + G T UCEC 686510 + 686490 686530 41 AAGGTGTCAGCCTCATTAAGGTGAAATTTGAGGATATCAAG AAGGTGTCAGCCTCATTAATGTGAAATTTGAGGATATCAAG < 41bp 0.538411231231022 0.825292849082699 NA NA prediction 0.573763235703355 Functional Gain - MRM3 ENSG00000171861 CDS Human protein_coding chr17:686510 chr17:686509 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15405 0 0 1 0 1 MRM3 chr17:686567 5'GT 686567 Upstream 59bp 14768 chr19 7591758 7591758 1 + G T UCEC 7591759 + 7591739 7591779 41 CCAGCGGTACTACCACCGAGGCCACGTGGACCCGGCCAACG CCAGCGGTACTACCACCGATGCCACGTGGACCCGGCCAACG < 41bp 0.573004348321299 0.859883183465055 NA NA prediction 0.573757670287512 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7591759 chr19:7591758 nonsynonymous SNV 0.617 4 20 hm7G_associated_SNPs_15407 0 0 1 0 1 MCOLN1 chr19:7591812 5'GT 7591812 Upstream 55bp 14769 chr12 21370118 21370118 1 + G T LUSC 21370119 + 21370099 21370139 41 GAAATTACTCAGCCCATTTGGGTGAATGCCCAAGAGATGAT GAAATTACTCAGCCCATTTTGGTGAATGCCCAAGAGATGAT < 41bp 0.525564443409894 0.812420992497664 NA NA prediction 0.573713098175541 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21370119 chr12:21370118 nonsynonymous SNV 0.542 4 20 hm7G_associated_SNPs_15408 0 0 0 0 1 SLCO1B1 chr12:21370053 3'AG 21370053 Downstream 66bp 14770 chr10 102539313 102539313 1 + G T UCEC 102539314 + 102539294 102539334 41 GCCGGATGGGGCTGGGACAGGAGTGACCGCCCCTGGCCACA GCCGGATGGGGCTGGGACATGAGTGACCGCCCCTGGCCACA < 41bp 0.456371698979944 0.786837780075627 NA NA prediction 0.573675560151254 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102539314 chr10:102539313 stopgain 0.999 0 20 hm7G_associated_SNPs_15410 0 0 0 0 2 PAX2 chr10:102539255 3'AG 102539255 Downstream 59bp 14771 chr10 102539313 102539313 1 + G T UCEC 102539314 + 102539294 102539334 41 GCCGGATGGGGCTGGGACAGGAGTGACCGCCCCTGGCCACA GCCGGATGGGGCTGGGACATGAGTGACCGCCCCTGGCCACA < 41bp 0.456371698979944 0.786837780075627 NA NA prediction 0.573675560151254 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102539314 chr10:102539313 stopgain 0.999 0 20 hm7G_associated_SNPs_15410 0 0 0 0 2 PAX2 chr10:102539340 5'GT 102539340 Upstream 28bp 14772 chr11 64331840 64331840 1 + G T UCEC 64331841 + 64331821 64331861 41 AACCAGACCAAGCACTTCAGGAGCTCAGAAAGGTGGCCAGG AACCAGACCAAGCACTTCATGAGCTCAGAAAGGTGGCCAGG < 41bp 0.47745359954581 0.786826598495484 NA NA prediction 0.573653196990968 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64331841 chr11:64331840 nonsynonymous SNV 0.060 0 20 hm7G_associated_SNPs_15411 0 0 0 0 2 SLC22A11 chr11:64331780 3'AG 64331780 Downstream 61bp 14773 chr11 64331840 64331840 1 + G T UCEC 64331841 + 64331821 64331861 41 AACCAGACCAAGCACTTCAGGAGCTCAGAAAGGTGGCCAGG AACCAGACCAAGCACTTCATGAGCTCAGAAAGGTGGCCAGG < 41bp 0.47745359954581 0.786826598495484 NA NA prediction 0.573653196990968 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64331841 chr11:64331840 nonsynonymous SNV 0.060 0 20 hm7G_associated_SNPs_15411 0 0 0 0 2 SLC22A11 chr11:64331900 5'GT 64331900 Upstream 61bp 14774 chr1 161480729 161480729 1 + G T UCEC 161480730 + 161480710 161480750 41 GTGGCCTTGATCTACTGCAGGAAAAAGCGGATTTCAGGTTT GTGGCCTTGATCTACTGCATGAAAAAGCGGATTTCAGGTTT < 41bp 0.531289609772451 0.818114414423905 NA NA prediction 0.573649609302906 Functional Gain - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480730 chr1:161480729 nonsynonymous SNV 0.013 2 20 hm7G_associated_SNPs_15413 0 0 1 0 1 FCGR2A chr1:161480746 5'GT 161480746 Upstream 18bp 14775 chr17 46669721 46669721 1 + G T LUSC 46669722 + 46669702 46669742 41 TCTCGATGCGCCGTCGCCGGGTCAGGTAGCGGTTGAAGTGG TCTCGATGCGCCGTCGCCGTGTCAGGTAGCGGTTGAAGTGG < 41bp 0.531608907762406 0.818429933574516 NA NA prediction 0.57364205162422 Functional Gain - HOXB5 ENSG00000120075 CDS Human protein_coding chr17:46669722 chr17:46669721 synonymous SNV . 0 20 hm7G_associated_SNPs_15415 0 0 0 0 1 HOXB5 chr17:46669726 5'GT 46669726 Upstream 6bp 14776 chr15 59368324 59368324 1 + G T OV 59368325 + 59368305 59368345 41 ACCTTTATCATCAATAGATGGCTATGGATCAAGCATGGTTG ACCTTTATCATCAATAGATTGCTATGGATCAAGCATGGTTG < 41bp 0.553124394920686 0.839939035401955 NA NA prediction 0.573629280962538 Functional Gain - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59368325 chr15:59368324 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_15418 0 0 1 0 1 RNF111 chr15:59368414 5'GT 59368414 Upstream 91bp 14777 chr1 209949017 209949017 1 + G T UCEC 209949018 + 209948998 209949038 41 GCTCTGAAGGAGGACTGGAGGACCCTTGGGACCCAGCACAG GCTCTGAAGGAGGACTGGATGACCCTTGGGACCCAGCACAG < 41bp 0.560728048950883 0.847526977877107 NA NA prediction 0.57359785785245 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209949018 chr1:209949017 nonsynonymous SNV 0.562 1 20 hm7G_associated_SNPs_15421 0 0 0 0 2 TRAF3IP3 chr1:209948944 3'AG 209948944 Downstream 74bp 14778 chr1 209949017 209949017 1 + G T UCEC 209949018 + 209948998 209949038 41 GCTCTGAAGGAGGACTGGAGGACCCTTGGGACCCAGCACAG GCTCTGAAGGAGGACTGGATGACCCTTGGGACCCAGCACAG < 41bp 0.560728048950883 0.847526977877107 NA NA prediction 0.57359785785245 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209949018 chr1:209949017 nonsynonymous SNV 0.562 1 20 hm7G_associated_SNPs_15421 0 0 0 0 2 TRAF3IP3 chr1:209949081 5'GT 209949081 Upstream 65bp 14779 chr11 60687373 60687373 1 + G T LGG 60687374 + 60687354 60687394 41 GACACTGGATGCCTGGATTGGGCCAGAGACCATGCACCTGG GACACTGGATGCCTGGATTTGGCCAGAGACCATGCACCTGG < 41bp 0.557327404920772 0.844118854855473 NA NA prediction 0.573582899869401 Functional Gain - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60687374 chr11:60687373 nonsynonymous SNV 0.943 4 20 hm7G_associated_SNPs_15422 0 0 1 0 1 TMEM109 chr11:60687402 5'GT 60687402 Upstream 30bp 14780 chr20 31671622 31671622 1 + G T UCEC 31671623 + 31671603 31671643 41 AGGACTTCTTGGAGGAGGGGGTGTCCTGGGCGTGCTCGGCG AGGACTTCTTGGAGGAGGGTGTGTCCTGGGCGTGCTCGGCG < 41bp 0.468328212789176 0.786790791646833 NA NA prediction 0.573581583293666 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31671623 chr20:31671622 nonsynonymous SNV 0.913 4 20 hm7G_associated_SNPs_15423 0 0 0 0 1 BPIFB4 chr20:31671680 5'GT 31671680 Upstream 59bp 14781 chr14 104640563 104640563 1 + G T LUAD 104640564 + 104640544 104640584 41 CCATGATCGCCCACGTGTCGGATGCGCCAGCCCAGCACGCA CCATGATCGCCCACGTGTCTGATGCGCCAGCCCAGCACGCA < 41bp 0.454205905485201 0.786774898935619 NA NA prediction 0.573549797871238 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104640564 chr14:104640563 synonymous SNV . 0 20 hm7G_associated_SNPs_15426 0 0 1 0 2 KIF26A chr14:104640485 3'AG 104640485 Downstream 79bp 14782 chr14 104640563 104640563 1 + G T LUAD 104640564 + 104640544 104640584 41 CCATGATCGCCCACGTGTCGGATGCGCCAGCCCAGCACGCA CCATGATCGCCCACGTGTCTGATGCGCCAGCCCAGCACGCA < 41bp 0.454205905485201 0.786774898935619 NA NA prediction 0.573549797871238 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104640564 chr14:104640563 synonymous SNV . 0 20 hm7G_associated_SNPs_15426 0 0 1 0 2 KIF26A chr14:104640647 5'GT 104640647 Upstream 85bp 14783 chr17 27008409 27008409 1 + G T HNSC 27008410 + 27008390 27008430 41 TGAAGCGTGTCAGGGAAGAGGGAGATGAAGAAGGTTAGTGC TGAAGCGTGTCAGGGAAGATGGAGATGAAGAAGGTTAGTGC < 41bp 0.549142010941971 0.835903892554984 NA NA prediction 0.573523763226025 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27008410 chr17:27008409 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_15430 0 0 1 0 1 SUPT6H chr17:27008422 5'GT 27008422 Upstream 14bp 14784 chr10 96535174 96535174 1 + G T LUAD 96535175 + 96535155 96535195 41 TTCAGCAATGGAAAGAGATGGAAGGAGATCCGGCGTTTCTC TTCAGCAATGGAAAGAGATTGAAGGAGATCCGGCGTTTCTC < 41bp 0.47682943245823 0.786760871498085 NA NA prediction 0.573521742996169 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96535175 chr10:96535174 nonsynonymous SNV 0.311 3 20 hm7G_associated_SNPs_15431 0 0 0 0 1 CYP2C19 chr10:96535147 3'AG 96535147 Downstream 28bp 14785 chrX 117796708 117796708 1 + G T STAD 117796709 + 117796689 117796729 41 TCCCAATATAGATGAAGAAGGAGCAATGAAAGAAGATGCTG TCCCAATATAGATGAAGAATGAGCAATGAAAGAAGATGCTG < 41bp 0.507864266394096 0.794621592214335 NA NA prediction 0.573514651640477 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117796709 chrX:117796708 stopgain 1.000 1 20 hm7G_associated_SNPs_15432 0 0 0 0 2 DOCK11 chrX:117796649 3'AG 117796649 Downstream 60bp 14786 chrX 117796708 117796708 1 + G T STAD 117796709 + 117796689 117796729 41 TCCCAATATAGATGAAGAAGGAGCAATGAAAGAAGATGCTG TCCCAATATAGATGAAGAATGAGCAATGAAAGAAGATGCTG < 41bp 0.507864266394096 0.794621592214335 NA NA prediction 0.573514651640477 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117796709 chrX:117796708 stopgain 1.000 1 20 hm7G_associated_SNPs_15432 0 0 0 0 2 DOCK11 chrX:117796755 5'GT 117796755 Upstream 48bp 14787 chr22 39817946 39817946 1 + G T UCEC 39817947 + 39817927 39817967 41 GGTTGTACAAGGCCCTAGAGGCAGCCCATGGGCCTGGGCAG GGTTGTACAAGGCCCTAGATGCAGCCCATGGGCCTGGGCAG < 41bp 0.571186417570977 0.857929399534985 NA NA prediction 0.573485963928015 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39817947 chr22:39817946 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15434 0 0 1 0 1 TAB1 chr22:39817976 5'GT 39817976 Upstream 31bp 14788 chr7 107323753 107323753 1 + G T LUAD 107323754 + 107323734 107323774 41 GTTAAGGAATTAAATGATCGGTTTAGACACAAAATCCCAGT GTTAAGGAATTAAATGATCTGTTTAGACACAAAATCCCAGT < 41bp 0.485231413293069 0.786736566478981 NA NA prediction 0.573473132957961 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107323754 chr7:107323753 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_15435 0 0 0 0 1 SLC26A4 chr7:107323799 5'GT 107323799 Upstream 47bp 14789 chr1 42870229 42870229 1 + G T UCEC 42870230 + 42870210 42870250 41 TGATGAAGCTGAGCCCCTGGGCTACCCAGTCGTGGTGAAGA TGATGAAGCTGAGCCCCTGTGCTACCCAGTCGTGGTGAAGA < 41bp 0.555019842696111 0.841745451099328 NA NA prediction 0.573451216806434 Functional Gain - RIMKLA ENSG00000177181 CDS Human protein_coding chr1:42870230 chr1:42870229 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_15436 0 0 0 0 2 RIMKLA chr1:42870182 3'AG 42870182 Downstream 48bp 14790 chr1 42870229 42870229 1 + G T UCEC 42870230 + 42870210 42870250 41 TGATGAAGCTGAGCCCCTGGGCTACCCAGTCGTGGTGAAGA TGATGAAGCTGAGCCCCTGTGCTACCCAGTCGTGGTGAAGA < 41bp 0.555019842696111 0.841745451099328 NA NA prediction 0.573451216806434 Functional Gain - RIMKLA ENSG00000177181 CDS Human protein_coding chr1:42870230 chr1:42870229 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_15436 0 0 0 0 2 RIMKLA chr1:42870268 5'GT 42870268 Upstream 40bp 14791 chr5 147491427 147491427 1 + G T LUSC 147491428 + 147491408 147491448 41 TCTAGATGGGAAAATCCACGGCAACACCTGCTCCATGTGTG TCTAGATGGGAAAATCCACTGCAACACCTGCTCCATGTGTG < 41bp 0.462857342484828 0.786722915122139 NA NA prediction 0.573445830244278 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147491428 chr5:147491427 nonsynonymous SNV 0.841 3 20 hm7G_associated_SNPs_15437 0 0 0 0 2 SPINK5 chr5:147491331 3'AG 147491331 Downstream 97bp 14792 chr5 147491427 147491427 1 + G T LUSC 147491428 + 147491408 147491448 41 TCTAGATGGGAAAATCCACGGCAACACCTGCTCCATGTGTG TCTAGATGGGAAAATCCACTGCAACACCTGCTCCATGTGTG < 41bp 0.462857342484828 0.786722915122139 NA NA prediction 0.573445830244278 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147491428 chr5:147491427 nonsynonymous SNV 0.841 3 20 hm7G_associated_SNPs_15437 0 0 0 0 2 SPINK5 chr5:147491458 5'GT 147491458 Upstream 32bp 14793 chr7 129357154 129357154 1 + G T PRAD 129357155 + 129357135 129357175 41 CGGTGGCATCGTTGGCAGAGGCCGCAGTGGCAGCTTCTCAG CGGTGGCATCGTTGGCAGATGCCGCAGTGGCAGCTTCTCAG < 41bp 0.56340182323478 0.850115109020862 NA NA prediction 0.573426571572165 Functional Gain - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129357155 chr7:129357154 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15440 0 0 1 0 2 NRF1 chr7:129357059 3'AG 129357059 Downstream 96bp 14794 chr7 129357154 129357154 1 + G T PRAD 129357155 + 129357135 129357175 41 CGGTGGCATCGTTGGCAGAGGCCGCAGTGGCAGCTTCTCAG CGGTGGCATCGTTGGCAGATGCCGCAGTGGCAGCTTCTCAG < 41bp 0.56340182323478 0.850115109020862 NA NA prediction 0.573426571572165 Functional Gain - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129357155 chr7:129357154 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15440 0 0 1 0 2 NRF1 chr7:129357216 5'GT 129357216 Upstream 63bp 14795 chr11 117984011 117984011 1 + G T LAML 117984012 + 117983992 117984032 41 CCGATGTGTTCAACTGGAAGGTGCGGGCAGGCTCAGACAAA CCGATGTGTTCAACTGGAATGTGCGGGCAGGCTCAGACAAA < 41bp 0.47420168676423 0.786709257252241 NA NA prediction 0.573418514504481 Functional Gain - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117984012 chr11:117984011 nonsynonymous SNV 0.944 2 20 hm7G_associated_SNPs_15441 0 0 0 0 1 TMPRSS4 chr11:117983984 3'AG 117983984 Downstream 28bp 14796 chr1 92446532 92446532 1 + G T UCEC 92446533 + 92446513 92446553 41 ATGAACTATGATGAGAAAAGGCAGTTAAGTCTGAATATAAA ATGAACTATGATGAGAAAATGCAGTTAAGTCTGAATATAAA < 41bp 0.493211701120231 0.786705051077363 NA NA prediction 0.573410102154726 Functional Gain - BRDT ENSG00000137948 CDS Human protein_coding chr1:92446533 chr1:92446532 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15442 0 0 0 0 1 BRDT chr1:92446446 3'AG 92446446 Downstream 87bp 14797 chr10 70693973 70693973 1 + G T UCEC 70693974 + 70693954 70693994 41 GAATGCCCAGTGTTTACATGGGGACATTGCACAGTCACAAA GAATGCCCAGTGTTTACATTGGGACATTGCACAGTCACAAA < 41bp 0.466744998758917 0.78669818027364 NA NA prediction 0.57339636054728 Functional Gain - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70693974 chr10:70693973 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15443 0 0 1 0 1 DDX50 chr10:70693955 3'AG 70693955 Downstream 19bp 14798 chr3 121976184 121976184 1 + G T UCEC 121976185 + 121976165 121976205 41 GGTGGGAGCAACTGGCTCAGGCGTCTCCACGGCAGTGGCAA GGTGGGAGCAACTGGCTCATGCGTCTCCACGGCAGTGGCAA < 41bp 0.450273693814322 0.786691740288337 NA NA prediction 0.573383480576674 Functional Gain - CASR ENSG00000036828 CDS Human protein_coding chr3:121976185 chr3:121976184 nonsynonymous SNV 0.936 4 20 hm7G_associated_SNPs_15445 0 0 0 0 1 CASR chr3:121976234 5'GT 121976234 Upstream 51bp 14799 chr8 43025733 43025733 1 + G T LUAD 43025734 + 43025714 43025754 41 CTTTTTTTCTGAAGGAGCTGGGATCTCCCAGCAGGACAGAC CTTTTTTTCTGAAGGAGCTTGGATCTCCCAGCAGGACAGAC < 41bp 0.545458275769322 0.832144060872597 NA NA prediction 0.573371570206548 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43025734 chr8:43025733 synonymous SNV . 0 20 hm7G_associated_SNPs_15446 0 0 0 0 1 HGSNAT chr8:43025728 3'AG 43025728 Downstream 6bp 14800 chr10 124043431 124043431 1 + G T LUAD 124043432 + 124043412 124043452 41 AACAAGGACATCCAAAGTGGGGAAGCAGGTGAGTTTGTGTT AACAAGGACATCCAAAGTGTGGAAGCAGGTGAGTTTGTGTT < 41bp 0.522239501618311 0.808923960065538 NA NA prediction 0.573368916894453 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124043432 chr10:124043431 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_15447 0 0 0 0 2 BTBD16 chr10:124043366 3'AG 124043366 Downstream 66bp 14801 chr10 124043431 124043431 1 + G T LUAD 124043432 + 124043412 124043452 41 AACAAGGACATCCAAAGTGGGGAAGCAGGTGAGTTTGTGTT AACAAGGACATCCAAAGTGTGGAAGCAGGTGAGTTTGTGTT < 41bp 0.522239501618311 0.808923960065538 NA NA prediction 0.573368916894453 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124043432 chr10:124043431 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_15447 0 0 0 0 2 BTBD16 chr10:124043439 5'GT 124043439 Upstream 9bp 14802 chr9 99227698 99227698 1 + G T UCEC 99227699 + 99227679 99227719 41 TATGCGCGGCAGAGGCAGAGGTGGCCCTGGGAACAGAGTTT TATGCGCGGCAGAGGCAGATGTGGCCCTGGGAACAGAGTTT < 41bp 0.467286974824091 0.786679796624524 NA NA prediction 0.573359593249048 Functional Gain - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99227699 chr9:99227698 nonsynonymous SNV 0.603 4 20 hm7G_associated_SNPs_15448 0 0 1 0 2 HABP4 chr9:99227619 3'AG 99227619 Downstream 80bp 14803 chr9 99227698 99227698 1 + G T UCEC 99227699 + 99227679 99227719 41 TATGCGCGGCAGAGGCAGAGGTGGCCCTGGGAACAGAGTTT TATGCGCGGCAGAGGCAGATGTGGCCCTGGGAACAGAGTTT < 41bp 0.467286974824091 0.786679796624524 NA NA prediction 0.573359593249048 Functional Gain - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99227699 chr9:99227698 nonsynonymous SNV 0.603 4 20 hm7G_associated_SNPs_15448 0 0 1 0 2 HABP4 chr9:99227780 5'GT 99227780 Upstream 83bp 14804 chr1 26507079 26507079 1 + G T LUSC 26507080 + 26507060 26507100 41 CAGGAGCTCATCCTGGGCGGGGTGGAACAGCTCCAGGCCCT CAGGAGCTCATCCTGGGCGTGGTGGAACAGCTCCAGGCCCT < 41bp 0.561737962524751 0.848411794079714 NA NA prediction 0.573347663109924 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507080 chr1:26507079 nonsynonymous SNV 0.683 4 20 hm7G_associated_SNPs_15449 0 0 1 0 1 CNKSR1 chr1:26507101 5'GT 26507101 Upstream 23bp 14805 chr1 36552618 36552618 1 + G T GBM 36552619 + 36552599 36552639 41 AAGGCAGCCACAGAGCTGAGGGAGGCCACTGCTCTAACTAT AAGGCAGCCACAGAGCTGATGGAGGCCACTGCTCTAACTAT < 41bp 0.459738331231578 0.786659679698463 NA NA prediction 0.573319359396925 Functional Gain - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552619 chr1:36552618 nonsynonymous SNV 0.916 4 20 hm7G_associated_SNPs_15450 0 0 0 0 2 TEKT2 chr1:36552532 3'AG 36552532 Downstream 87bp 14806 chr1 36552618 36552618 1 + G T GBM 36552619 + 36552599 36552639 41 AAGGCAGCCACAGAGCTGAGGGAGGCCACTGCTCTAACTAT AAGGCAGCCACAGAGCTGATGGAGGCCACTGCTCTAACTAT < 41bp 0.459738331231578 0.786659679698463 NA NA prediction 0.573319359396925 Functional Gain - TEKT2 ENSG00000092850 CDS Human protein_coding chr1:36552619 chr1:36552618 nonsynonymous SNV 0.916 4 20 hm7G_associated_SNPs_15450 0 0 0 0 2 TEKT2 chr1:36552646 5'GT 36552646 Upstream 29bp 14807 chr4 39280255 39280255 1 + G T GBM 39280256 + 39280236 39280276 41 GTACCCAGTACCTGCGAACGGAGGAGGAACTGTGATTGGCA GTACCCAGTACCTGCGAACTGAGGAGGAACTGTGATTGGCA < 41bp 0.480346716727983 0.786659280438961 NA NA prediction 0.573318560877923 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39280256 chr4:39280255 synonymous SNV . 0 20 hm7G_associated_SNPs_15451 0 0 0 0 2 WDR19 chr4:39280159 3'AG 39280159 Downstream 97bp 14808 chr4 39280255 39280255 1 + G T GBM 39280256 + 39280236 39280276 41 GTACCCAGTACCTGCGAACGGAGGAGGAACTGTGATTGGCA GTACCCAGTACCTGCGAACTGAGGAGGAACTGTGATTGGCA < 41bp 0.480346716727983 0.786659280438961 NA NA prediction 0.573318560877923 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39280256 chr4:39280255 synonymous SNV . 0 20 hm7G_associated_SNPs_15451 0 0 0 0 2 WDR19 chr4:39280283 5'GT 39280283 Upstream 29bp 14809 chr17 42855360 42855360 1 + G T LUAD 42855361 + 42855341 42855381 41 TGCATCTGTCAGCCAGACTGGACAGGCAAAGACTGCAGTAT TGCATCTGTCAGCCAGACTTGACAGGCAAAGACTGCAGTAT < 41bp 0.560755356132999 0.847374139266574 NA NA prediction 0.573237566267151 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855361 chr17:42855360 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15455 0 0 0 0 2 ADAM11 chr17:42855320 3'AG 42855320 Downstream 41bp 14810 chr17 42855360 42855360 1 + G T LUAD 42855361 + 42855341 42855381 41 TGCATCTGTCAGCCAGACTGGACAGGCAAAGACTGCAGTAT TGCATCTGTCAGCCAGACTTGACAGGCAAAGACTGCAGTAT < 41bp 0.560755356132999 0.847374139266574 NA NA prediction 0.573237566267151 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855361 chr17:42855360 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15455 0 0 0 0 2 ADAM11 chr17:42855434 5'GT 42855434 Upstream 75bp 14811 chr22 40798145 40798145 1 + G T GBM 40798146 + 40798126 40798166 41 CCTCATCCTGATTCTAGAAGGAAGAGTCAGCAGAGCAACCA CCTCATCCTGATTCTAGAATGAAGAGTCAGCAGAGCAACCA < 41bp 0.557149726998117 0.843756875053121 NA NA prediction 0.573214296110009 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40798146 chr22:40798145 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_15457 0 0 1 0 2 SGSM3 chr22:40798143 3'AG 40798143 Downstream 3bp 14812 chr22 40798145 40798145 1 + G T GBM 40798146 + 40798126 40798166 41 CCTCATCCTGATTCTAGAAGGAAGAGTCAGCAGAGCAACCA CCTCATCCTGATTCTAGAATGAAGAGTCAGCAGAGCAACCA < 41bp 0.557149726998117 0.843756875053121 NA NA prediction 0.573214296110009 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40798146 chr22:40798145 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_15457 0 0 1 0 2 SGSM3 chr22:40798209 5'GT 40798209 Upstream 65bp 14813 chr2 17773430 17773430 1 + G T LUAD 17773431 + 17773411 17773451 41 GAGCATGAACTCAAGCAGTGGTACAAAGGATTTCTCAAGGA GAGCATGAACTCAAGCAGTTGTACAAAGGATTTCTCAAGGA < 41bp 0.531267587019882 0.817870786729792 NA NA prediction 0.57320639941982 Functional Gain - VSNL1 ENSG00000163032 CDS Human protein_coding chr2:17773431 chr2:17773430 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15458 0 0 1 0 2 VSNL1 chr2:17773337 3'AG 17773337 Downstream 94bp 14814 chr2 17773430 17773430 1 + G T LUAD 17773431 + 17773411 17773451 41 GAGCATGAACTCAAGCAGTGGTACAAAGGATTTCTCAAGGA GAGCATGAACTCAAGCAGTTGTACAAAGGATTTCTCAAGGA < 41bp 0.531267587019882 0.817870786729792 NA NA prediction 0.57320639941982 Functional Gain - VSNL1 ENSG00000163032 CDS Human protein_coding chr2:17773431 chr2:17773430 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15458 0 0 1 0 2 VSNL1 chr2:17773503 5'GT 17773503 Upstream 74bp 14815 chr9 99227630 99227630 1 + G T UCEC 99227631 + 99227611 99227651 41 CTTCCTAGACCAGGTGATAGGTTTGATCGAGACAGACCGTT CTTCCTAGACCAGGTGATATGTTTGATCGAGACAGACCGTT < 41bp 0.533467315079788 0.820058913635399 NA NA prediction 0.573183197111222 Functional Gain - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99227631 chr9:99227630 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_15459 0 0 1 0 1 HABP4 chr9:99227619 3'AG 99227619 Downstream 12bp 14816 chrX 149905792 149905792 1 + G T LIHC 149905793 + 149905773 149905813 41 GGTGGTGCATTGCAGCGACGGTTGGGACCGAACAGCCCAGC GGTGGTGCATTGCAGCGACTGTTGGGACCGAACAGCCCAGC < 41bp 0.472328222838265 0.786591456432199 NA NA prediction 0.573182912864398 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905793 chrX:149905792 nonsynonymous SNV 0.927 5 20 hm7G_associated_SNPs_15460 0 0 1 0 1 MTMR1 chrX:149905714 3'AG 149905714 Downstream 79bp 14817 chr7 89982168 89982168 1 + G T LUSC 89982169 + 89982149 89982189 41 AGCTAAGACTCTTCACCAGGGGAGGATCCGGTGGAATGGGT AGCTAAGACTCTTCACCAGTGGAGGATCCGGTGGAATGGGT < 41bp 0.475243506414597 0.786585768489227 NA NA prediction 0.573171536978455 Functional Gain - GTPBP10 ENSG00000105793 CDS Human protein_coding chr7:89982169 chr7:89982168 nonsynonymous SNV 0.665 0 20 hm7G_associated_SNPs_15462 0 0 1 0 1 GTPBP10 chr7:89982130 3'AG 89982130 Downstream 39bp 14818 chr15 91424004 91424004 1 + G T UCEC 91424005 + 91423985 91424025 41 GAGGATCCCTCTGGCGAGTGGGTCCTAGAGATTGAAAACAC GAGGATCCCTCTGGCGAGTTGGTCCTAGAGATTGAAAACAC < 41bp 0.562387227883118 0.848952538928577 NA NA prediction 0.573130622090918 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91424005 chr15:91424004 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_15463 0 0 1 0 2 FURIN chr15:91423921 3'AG 91423921 Downstream 84bp 14819 chr15 91424004 91424004 1 + G T UCEC 91424005 + 91423985 91424025 41 GAGGATCCCTCTGGCGAGTGGGTCCTAGAGATTGAAAACAC GAGGATCCCTCTGGCGAGTTGGTCCTAGAGATTGAAAACAC < 41bp 0.562387227883118 0.848952538928577 NA NA prediction 0.573130622090918 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91424005 chr15:91424004 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_15463 0 0 1 0 2 FURIN chr15:91424045 5'GT 91424045 Upstream 42bp 14820 chr1 15788127 15788127 1 + G T HNSC 15788128 + 15788108 15788148 41 CCCTGATAGCCAACAGCTGGGTCCTGACGGCTGCCCACTGC CCCTGATAGCCAACAGCTGTGTCCTGACGGCTGCCCACTGC < 41bp 0.465426521132858 0.786555718556953 NA NA prediction 0.573111437113906 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15788128 chr1:15788127 nonsynonymous SNV 0.031 4 20 hm7G_associated_SNPs_15464 0 0 0 0 2 CELA2A chr1:15788056 3'AG 15788056 Downstream 72bp 14821 chr1 15788127 15788127 1 + G T HNSC 15788128 + 15788108 15788148 41 CCCTGATAGCCAACAGCTGGGTCCTGACGGCTGCCCACTGC CCCTGATAGCCAACAGCTGTGTCCTGACGGCTGCCCACTGC < 41bp 0.465426521132858 0.786555718556953 NA NA prediction 0.573111437113906 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15788128 chr1:15788127 nonsynonymous SNV 0.031 4 20 hm7G_associated_SNPs_15464 0 0 0 0 2 CELA2A chr1:15788153 5'GT 15788153 Upstream 27bp 14822 chrX 9661245 9661245 1 + G T SARC 9661246 + 9661226 9661266 41 GTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTGTC GTTTTGCAAGAATATGGACTGAAGATGGTGAGTTCTGTGTC < 41bp 0.537520522074227 0.824070747951613 NA NA prediction 0.573100451754771 Functional Gain - TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661246 chrX:9661245 synonymous SNV . 0 20 hm7G_associated_SNPs_15465 0 0 0 0 2 TBL1X chrX:9661189 3'AG 9661189 Downstream 57bp 14823 chrX 9661245 9661245 1 + G T SARC 9661246 + 9661226 9661266 41 GTTTTGCAAGAATATGGACGGAAGATGGTGAGTTCTGTGTC GTTTTGCAAGAATATGGACTGAAGATGGTGAGTTCTGTGTC < 41bp 0.537520522074227 0.824070747951613 NA NA prediction 0.573100451754771 Functional Gain - TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661246 chrX:9661245 synonymous SNV . 0 20 hm7G_associated_SNPs_15465 0 0 0 0 2 TBL1X chrX:9661252 5'GT 9661252 Upstream 8bp 14824 chr11 93530833 93530833 1 + G T LUAD 93530834 + 93530814 93530854 41 TTCATTACAGTCCAGTGAAGGGCTTCTGGAAAAAATAATTA TTCATTACAGTCCAGTGAATGGCTTCTGGAAAAAATAATTA < 41bp 0.488737522640755 0.786547778628441 NA NA prediction 0.573095557256883 Functional Gain - MED17 ENSG00000042429 CDS Human protein_coding chr11:93530834 chr11:93530833 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15467 0 0 1 0 1 MED17 chr11:93530885 5'GT 93530885 Upstream 53bp 14825 chr8 42196180 42196180 1 + G T LGG 42196181 + 42196161 42196201 41 CCGCAGGAGACTCTCAACGGGGGAATCACCGACATGCTCAC CCGCAGGAGACTCTCAACGTGGGAATCACCGACATGCTCAC < 41bp 0.537937340970164 0.824482840743437 NA NA prediction 0.573090999546547 Functional Gain - POLB ENSG00000070501 CDS Human protein_coding chr8:42196181 chr8:42196180 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_15469 0 0 1 0 1 POLB chr8:42196203 5'GT 42196203 Upstream 24bp 14826 chr7 150747242 150747242 1 + G T LUAD 150747243 + 150747223 150747263 41 TTTAACTCTGGCGCTGATGGGGCAGAGCTGCTCACCACTAC TTTAACTCTGGCGCTGATGTGGCAGAGCTGCTCACCACTAC < 41bp 0.455655734402207 0.786543784052899 NA NA prediction 0.573087568105799 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150747243 chr7:150747242 nonsynonymous SNV 0.731 3 20 hm7G_associated_SNPs_15470 0 0 1 0 1 ASIC3 chr7:150747193 3'AG 150747193 Downstream 50bp 14827 chr1 171300844 171300844 1 + G T LUAD 171300845 + 171300825 171300865 41 GATCCCAGAAGGCTTTCAGGGCAAACGCGTCTTGGTGATTG GATCCCAGAAGGCTTTCAGTGCAAACGCGTCTTGGTGATTG < 41bp 0.551497122954428 0.838040114893412 NA NA prediction 0.573085983877967 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300845 chr1:171300844 nonsynonymous SNV 0.010 3 20 hm7G_associated_SNPs_15472 0 0 0 0 2 FMO4 chr1:171300779 3'AG 171300779 Downstream 66bp 14828 chr1 171300844 171300844 1 + G T LUAD 171300845 + 171300825 171300865 41 GATCCCAGAAGGCTTTCAGGGCAAACGCGTCTTGGTGATTG GATCCCAGAAGGCTTTCAGTGCAAACGCGTCTTGGTGATTG < 41bp 0.551497122954428 0.838040114893412 NA NA prediction 0.573085983877967 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171300845 chr1:171300844 nonsynonymous SNV 0.010 3 20 hm7G_associated_SNPs_15472 0 0 0 0 2 FMO4 chr1:171300921 5'GT 171300921 Upstream 78bp 14829 chr15 73735652 73735652 1 + G T KIRP 73735653 + 73735633 73735673 41 ACCCACCTGGGCCATGCCTGGAAGCTGGGACAGCCCCCTGC ACCCACCTGGGCCATGCCTTGAAGCTGGGACAGCCCCCTGC < 41bp 0.473213728255954 0.786535597938686 NA NA prediction 0.573071195877372 Functional Gain - REC114 ENSG00000183324 CDS Human protein_coding chr15:73735653 chr15:73735652 synonymous SNV . 0 20 hm7G_associated_SNPs_15473 0 0 0 0 1 REC114 chr15:73735685 5'GT 73735685 Upstream 34bp 14830 chr14 68043190 68043190 1 + G T HNSC 68043191 + 68043171 68043211 41 TGCCTATGAGCAGCTCATTGGAAAACTGATGGATGGTGAAG TGCCTATGAGCAGCTCATTTGAAAACTGATGGATGGTGAAG < 41bp 0.46009194580349 0.786533331028834 NA NA prediction 0.573066662057668 Functional Gain - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68043191 chr14:68043190 stopgain 1.000 1 20 hm7G_associated_SNPs_15474 0 0 1 0 2 PLEKHH1 chr14:68043112 3'AG 68043112 Downstream 79bp 14831 chr14 68043190 68043190 1 + G T HNSC 68043191 + 68043171 68043211 41 TGCCTATGAGCAGCTCATTGGAAAACTGATGGATGGTGAAG TGCCTATGAGCAGCTCATTTGAAAACTGATGGATGGTGAAG < 41bp 0.46009194580349 0.786533331028834 NA NA prediction 0.573066662057668 Functional Gain - PLEKHH1 ENSG00000054690 CDS Human protein_coding chr14:68043191 chr14:68043190 stopgain 1.000 1 20 hm7G_associated_SNPs_15474 0 0 1 0 2 PLEKHH1 chr14:68043220 5'GT 68043220 Upstream 31bp 14832 chr17 7155850 7155850 1 + G T LUAD 7155851 + 7155831 7155871 41 TCAGAGGGCGCCAGAGCAGGGACCGGACGCGAGTTGGAGAT TCAGAGGGCGCCAGAGCAGTGACCGGACGCGAGTTGGAGAT < 41bp 0.533374079313502 0.819904809567024 NA NA prediction 0.573061460507043 Functional Gain - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7155851 chr17:7155850 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_15475 0 0 1 0 1 ELP5 chr17:7155915 5'GT 7155915 Upstream 66bp 14833 chr1 153661697 153661697 1 + G T LUAD 153661698 + 153661678 153661718 41 AGCTGAAGCGTGGGGAGACGGTGCAGGCCGAAGCCTTTGAC AGCTGAAGCGTGGGGAGACTGTGCAGGCCGAAGCCTTTGAC < 41bp 0.466165445388659 0.78652798732421 NA NA prediction 0.573055974648421 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153661698 chr1:153661697 synonymous SNV . 0 20 hm7G_associated_SNPs_15476 0 0 0 0 2 NPR1 chr1:153661664 3'AG 153661664 Downstream 34bp 14834 chr1 153661697 153661697 1 + G T LUAD 153661698 + 153661678 153661718 41 AGCTGAAGCGTGGGGAGACGGTGCAGGCCGAAGCCTTTGAC AGCTGAAGCGTGGGGAGACTGTGCAGGCCGAAGCCTTTGAC < 41bp 0.466165445388659 0.78652798732421 NA NA prediction 0.573055974648421 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153661698 chr1:153661697 synonymous SNV . 0 20 hm7G_associated_SNPs_15476 0 0 0 0 2 NPR1 chr1:153661787 5'GT 153661787 Upstream 91bp 14835 chr1 206653400 206653400 1 + G T READ 206653401 + 206653381 206653421 41 GCTACCAGGCCCTGCGGCTGGCACGGGCCCTGCTGGATGGG GCTACCAGGCCCTGCGGCTTGCACGGGCCCTGCTGGATGGG < 41bp 0.57497447368413 0.861496355663169 NA NA prediction 0.573043763958077 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653401 chr1:206653400 synonymous SNV . 0 20 hm7G_associated_SNPs_15478 0 0 0 0 2 IKBKE chr1:206653365 3'AG 206653365 Downstream 36bp 14836 chr1 206653400 206653400 1 + G T READ 206653401 + 206653381 206653421 41 GCTACCAGGCCCTGCGGCTGGCACGGGCCCTGCTGGATGGG GCTACCAGGCCCTGCGGCTTGCACGGGCCCTGCTGGATGGG < 41bp 0.57497447368413 0.861496355663169 NA NA prediction 0.573043763958077 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653401 chr1:206653400 synonymous SNV . 0 20 hm7G_associated_SNPs_15478 0 0 0 0 2 IKBKE chr1:206653456 5'GT 206653456 Upstream 57bp 14837 chr22 24226926 24226926 1 + G T UCEC 24226927 + 24226907 24226947 41 GTTCCTTCCTGAGACCAAAGGCAAGACCTTCCAAGAGATCT GTTCCTTCCTGAGACCAAATGCAAGACCTTCCAAGAGATCT < 41bp 0.539306763322024 0.825811195928921 NA NA prediction 0.573008865213795 Functional Gain - SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24226927 chr22:24226926 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_15479 0 0 0 1 1 SLC2A11 chr22:24226836 3'AG 24226836 Downstream 91bp 14838 chr2 96260164 96260164 1 + G T HNSC 96260165 + 96260145 96260185 41 AACACCATCCCATCGAAGAGGCAGCTGAGGAACACCGGGTA AACACCATCCCATCGAAGATGCAGCTGAGGAACACCGGGTA < 41bp 0.527781592314633 0.814272047150413 NA NA prediction 0.57298090967156 Functional Gain - TRIM43 ENSG00000144015 CDS Human protein_coding chr2:96260165 chr2:96260164 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_15480 0 0 0 0 1 TRIM43 chr2:96260182 5'GT 96260182 Upstream 19bp 14839 chr2 242097241 242097241 1 + G T LUAD 242097242 + 242097222 242097262 41 AAGAACATGAGCTGCCTGTGGACATGGAAACCATCAACCTG AAGAACATGAGCTGCCTGTTGACATGGAAACCATCAACCTG < 41bp 0.552312531332886 0.83879949445541 NA NA prediction 0.572973926245048 Functional Gain - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242097242 chr2:242097241 synonymous SNV . 0 20 hm7G_associated_SNPs_15481 0 0 1 0 2 PPP1R7 chr2:242097222 3'AG 242097222 Downstream 20bp 14840 chr2 242097241 242097241 1 + G T LUAD 242097242 + 242097222 242097262 41 AAGAACATGAGCTGCCTGTGGACATGGAAACCATCAACCTG AAGAACATGAGCTGCCTGTTGACATGGAAACCATCAACCTG < 41bp 0.552312531332886 0.83879949445541 NA NA prediction 0.572973926245048 Functional Gain - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242097242 chr2:242097241 synonymous SNV . 0 20 hm7G_associated_SNPs_15481 0 0 1 0 2 PPP1R7 chr2:242097277 5'GT 242097277 Upstream 37bp 14841 chr22 41360110 41360110 1 + G T STAD 41360111 + 41360091 41360131 41 AGAGTGTACTGTCGCATGGGGAGTCTGTAACGTAAGGAAGC AGAGTGTACTGTCGCATGGTGAGTCTGTAACGTAAGGAAGC < 41bp 0.474106082431486 0.786480176652624 NA NA prediction 0.572960353305248 Functional Gain - RBX1 ENSG00000100387 CDS Human protein_coding chr22:41360111 chr22:41360110 stopgain 0.998 1 20 hm7G_associated_SNPs_15483 0 0 1 3 2 RBX1 chr22:41360051 3'AG 41360051 Downstream 60bp 14842 chr22 41360110 41360110 1 + G T STAD 41360111 + 41360091 41360131 41 AGAGTGTACTGTCGCATGGGGAGTCTGTAACGTAAGGAAGC AGAGTGTACTGTCGCATGGTGAGTCTGTAACGTAAGGAAGC < 41bp 0.474106082431486 0.786480176652624 NA NA prediction 0.572960353305248 Functional Gain - RBX1 ENSG00000100387 CDS Human protein_coding chr22:41360111 chr22:41360110 stopgain 0.998 1 20 hm7G_associated_SNPs_15483 0 0 1 3 2 RBX1 chr22:41360121 5'GT 41360121 Upstream 12bp 14843 chr9 72912940 72912940 1 + G T LIHC 72912941 + 72912921 72912961 41 GAAGAGCTTGACCGACAGAGGAGAATAGGTAATACCCGCAA GAAGAGCTTGACCGACAGATGAGAATAGGTAATACCCGCAA < 41bp 0.521142302002603 0.807603961433602 NA NA prediction 0.572923318861997 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72912941 chr9:72912940 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_15485 0 0 1 0 1 SMC5 chr9:72912882 3'AG 72912882 Downstream 59bp 14844 chr12 65222241 65222241 1 + G T THYM 65222242 + 65222222 65222262 41 AGTGGTACGATGCTCTCAAGGCAGTTGCCAGGCTATCCACA AGTGGTACGATGCTCTCAATGCAGTTGCCAGGCTATCCACA < 41bp 0.456511057163343 0.786447492854839 NA NA prediction 0.572894985709679 Functional Gain - TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65222242 chr12:65222241 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_15488 0 0 1 0 2 TBC1D30 chr12:65222224 3'AG 65222224 Downstream 18bp 14845 chr12 65222241 65222241 1 + G T THYM 65222242 + 65222222 65222262 41 AGTGGTACGATGCTCTCAAGGCAGTTGCCAGGCTATCCACA AGTGGTACGATGCTCTCAATGCAGTTGCCAGGCTATCCACA < 41bp 0.456511057163343 0.786447492854839 NA NA prediction 0.572894985709679 Functional Gain - TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65222242 chr12:65222241 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_15488 0 0 1 0 2 TBC1D30 chr12:65222289 5'GT 65222289 Upstream 49bp 14846 chr7 105183003 105183003 1 + G T HNSC 105183004 + 105182984 105183024 41 TTGCTGACTGCGCAACCTTGGATGGACGATCTTGGAACCAT TTGCTGACTGCGCAACCTTTGATGGACGATCTTGGAACCAT < 41bp 0.467938911727483 0.786442299655799 NA NA prediction 0.572884599311599 Functional Gain - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105183004 chr7:105183003 nonsynonymous SNV 0.788 1 20 hm7G_associated_SNPs_15489 0 0 1 0 1 RINT1 chr7:105183096 5'GT 105183096 Upstream 94bp 14847 chr10 71136763 71136763 1 + G T COAD 71136764 + 71136744 71136784 41 AGTCAAGATGGCCAAGGAGGGCCTCTTATTTGAAGGGCGGA AGTCAAGATGGCCAAGGAGTGCCTCTTATTTGAAGGGCGGA < 41bp 0.565701137675358 0.852142183283249 NA NA prediction 0.572882091215782 Functional Gain - HK1 ENSG00000156515 CDS Human protein_coding chr10:71136764 chr10:71136763 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_15490 0 0 1 0 2 HK1 chr10:71136690 3'AG 71136690 Downstream 74bp 14848 chr10 71136763 71136763 1 + G T COAD 71136764 + 71136744 71136784 41 AGTCAAGATGGCCAAGGAGGGCCTCTTATTTGAAGGGCGGA AGTCAAGATGGCCAAGGAGTGCCTCTTATTTGAAGGGCGGA < 41bp 0.565701137675358 0.852142183283249 NA NA prediction 0.572882091215782 Functional Gain - HK1 ENSG00000156515 CDS Human protein_coding chr10:71136764 chr10:71136763 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_15490 0 0 1 0 2 HK1 chr10:71136845 5'GT 71136845 Upstream 83bp 14849 chr11 20515727 20515727 1 + G T THCA 20515728 + 20515708 20515748 41 TTCAGGTCGTGTTCTCTACGGGCCCTCAGAGCACCAAAACA TTCAGGTCGTGTTCTCTACTGGCCCTCAGAGCACCAAAACA < 41bp 0.473153695900539 0.786423537741984 NA NA prediction 0.572847075483967 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515728 chr11:20515727 synonymous SNV . 0 20 hm7G_associated_SNPs_15492 0 0 1 0 2 PRMT3 chr11:20515713 3'AG 20515713 Downstream 15bp 14850 chr11 20515727 20515727 1 + G T THCA 20515728 + 20515708 20515748 41 TTCAGGTCGTGTTCTCTACGGGCCCTCAGAGCACCAAAACA TTCAGGTCGTGTTCTCTACTGGCCCTCAGAGCACCAAAACA < 41bp 0.473153695900539 0.786423537741984 NA NA prediction 0.572847075483967 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515728 chr11:20515727 synonymous SNV . 0 20 hm7G_associated_SNPs_15492 0 0 1 0 2 PRMT3 chr11:20515800 5'GT 20515800 Upstream 74bp 14851 chr2 71360631 71360631 1 + G T LUAD 71360632 + 71360612 71360652 41 ATGATAATGATGAGGAGGAGGAAGATATTGATTTTTTTGAA ATGATAATGATGAGGAGGATGAAGATATTGATTTTTTTGAA < 41bp 0.495011202218696 0.786413683491423 NA NA prediction 0.572827366982846 Functional Gain - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71360632 chr2:71360631 nonsynonymous SNV 0.037 0 20 hm7G_associated_SNPs_15494 0 0 1 0 1 MPHOSPH10 chr2:71360706 5'GT 71360706 Upstream 76bp 14852 chr5 82789668 82789668 1 + G T LUAD 82789669 + 82789649 82789689 41 GCTGTTATGGAGATAAGATGGGAAAGGCAGGAGTCAGGACT GCTGTTATGGAGATAAGATTGGAAAGGCAGGAGTCAGGACT < 41bp 0.549857628348395 0.836269366604213 NA NA prediction 0.572823476511635 Functional Gain - VCAN ENSG00000038427 CDS Human protein_coding chr5:82789669 chr5:82789668 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15495 0 0 1 0 2 VCAN chr5:82789623 3'AG 82789623 Downstream 46bp 14853 chr5 82789668 82789668 1 + G T LUAD 82789669 + 82789649 82789689 41 GCTGTTATGGAGATAAGATGGGAAAGGCAGGAGTCAGGACT GCTGTTATGGAGATAAGATTGGAAAGGCAGGAGTCAGGACT < 41bp 0.549857628348395 0.836269366604213 NA NA prediction 0.572823476511635 Functional Gain - VCAN ENSG00000038427 CDS Human protein_coding chr5:82789669 chr5:82789668 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15495 0 0 1 0 2 VCAN chr5:82789750 5'GT 82789750 Upstream 83bp 14854 chr22 30124659 30124659 1 + G T LUSC 30124660 + 30124640 30124680 41 AGGAGTTTGTGACCCTTCTGGGACCCAAACTCTCCACCTCA AGGAGTTTGTGACCCTTCTTGGACCCAAACTCTCCACCTCA < 41bp 0.454908144669115 0.786405336778972 NA NA prediction 0.572810673557944 Functional Gain - CABP7 ENSG00000100314 CDS Human protein_coding chr22:30124660 chr22:30124659 synonymous SNV . 0 20 hm7G_associated_SNPs_15496 0 0 0 0 2 CABP7 chr22:30124619 3'AG 30124619 Downstream 41bp 14855 chr22 30124659 30124659 1 + G T LUSC 30124660 + 30124640 30124680 41 AGGAGTTTGTGACCCTTCTGGGACCCAAACTCTCCACCTCA AGGAGTTTGTGACCCTTCTTGGACCCAAACTCTCCACCTCA < 41bp 0.454908144669115 0.786405336778972 NA NA prediction 0.572810673557944 Functional Gain - CABP7 ENSG00000100314 CDS Human protein_coding chr22:30124660 chr22:30124659 synonymous SNV . 0 20 hm7G_associated_SNPs_15496 0 0 0 0 2 CABP7 chr22:30124731 5'GT 30124731 Upstream 73bp 14856 chr2 11304381 11304381 1 + G T LUAD 11304382 + 11304362 11304402 41 AGAAGTGGATCATAGACCTGGCCATGGTAAGTATTATGCTT AGAAGTGGATCATAGACCTTGCCATGGTAAGTATTATGCTT < 41bp 0.472490162613105 0.786402222484676 NA NA prediction 0.572804444969352 Functional Gain - PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11304382 chr2:11304381 synonymous SNV . 0 20 hm7G_associated_SNPs_15497 0 0 0 0 2 PQLC3 chr2:11304330 3'AG 11304330 Downstream 52bp 14857 chr2 11304381 11304381 1 + G T LUAD 11304382 + 11304362 11304402 41 AGAAGTGGATCATAGACCTGGCCATGGTAAGTATTATGCTT AGAAGTGGATCATAGACCTTGCCATGGTAAGTATTATGCTT < 41bp 0.472490162613105 0.786402222484676 NA NA prediction 0.572804444969352 Functional Gain - PQLC3 ENSG00000162976 CDS Human protein_coding chr2:11304382 chr2:11304381 synonymous SNV . 0 20 hm7G_associated_SNPs_15497 0 0 0 0 2 PQLC3 chr2:11304387 5'GT 11304387 Upstream 7bp 14858 chr20 61588288 61588288 1 + G T UCEC 61588289 + 61588269 61588309 41 GGGGCTACTGCCTGACACAGGTTGTGGGCGGCCACCTCGGG GGGGCTACTGCCTGACACATGTTGTGGGCGGCCACCTCGGG < 41bp 0.559427384626569 0.845821334238757 NA NA prediction 0.572787899224376 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61588289 chr20:61588288 nonsynonymous SNV 0.939 4 20 hm7G_associated_SNPs_15499 0 0 1 0 1 SLC17A9 chr20:61588314 5'GT 61588314 Upstream 27bp 14859 chr1 160388806 160388806 1 + G T LUSC 160388807 + 160388787 160388827 41 TGTAGGATGACAACTGGGGGGAAACGACGACAGTAGTAACG TGTAGGATGACAACTGGGGTGAAACGACGACAGTAGTAACG < 41bp 0.557091681053085 0.843475715348834 NA NA prediction 0.572768068591498 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160388807 chr1:160388806 synonymous SNV . 0 20 hm7G_associated_SNPs_15501 0 0 1 0 1 VANGL2 chr1:160388792 3'AG 160388792 Downstream 15bp 14860 chr8 124817528 124817528 1 + G T COAD 124817529 + 124817509 124817549 41 GCATGGTCTGCATGGGATAGGAGAAACTGTCCATGTCCCAT GCATGGTCTGCATGGGATATGAGAAACTGTCCATGTCCCAT < 41bp 0.529147963178613 0.815531768336511 NA NA prediction 0.572767610315795 Functional Gain - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124817529 chr8:124817528 stopgain 0.997 1 20 hm7G_associated_SNPs_15502 0 0 1 0 2 FAM91A1 chr8:124817507 3'AG 124817507 Downstream 22bp 14861 chr8 124817528 124817528 1 + G T COAD 124817529 + 124817509 124817549 41 GCATGGTCTGCATGGGATAGGAGAAACTGTCCATGTCCCAT GCATGGTCTGCATGGGATATGAGAAACTGTCCATGTCCCAT < 41bp 0.529147963178613 0.815531768336511 NA NA prediction 0.572767610315795 Functional Gain - FAM91A1 ENSG00000176853 CDS Human protein_coding chr8:124817529 chr8:124817528 stopgain 0.997 1 20 hm7G_associated_SNPs_15502 0 0 1 0 2 FAM91A1 chr8:124817579 5'GT 124817579 Upstream 52bp 14862 chr10 106163588 106163588 1 + G T UCEC 106163589 + 106163569 106163609 41 CTGAATGTGCACAGATGGAGGAAGCTCGAGGTAACATCTGG CTGAATGTGCACAGATGGATGAAGCTCGAGGTAACATCTGG < 41bp 0.545660488500576 0.832033684403847 NA NA prediction 0.572746391806541 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106163589 chr10:106163588 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15503 0 0 0 0 1 CFAP58 chr10:106163598 5'GT 106163598 Upstream 11bp 14863 chr2 132277158 132277158 1 + G T UCEC 132277159 + 132277139 132277179 41 TCGCCTTGGGCATCACCCAGGATGAGAATGGAAAACAGCAG TCGCCTTGGGCATCACCCATGATGAGAATGGAAAACAGCAG < 41bp 0.543242955974484 0.829602969960277 NA NA prediction 0.572720027971586 Functional Gain - LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132277159 chr2:132277158 . . 0 20 hm7G_associated_SNPs_15506 0 0 1 0 2 LOC150776 chr2:132277108 3'AG 132277108 Downstream 51bp 14864 chr2 132277158 132277158 1 + G T UCEC 132277159 + 132277139 132277179 41 TCGCCTTGGGCATCACCCAGGATGAGAATGGAAAACAGCAG TCGCCTTGGGCATCACCCATGATGAGAATGGAAAACAGCAG < 41bp 0.543242955974484 0.829602969960277 NA NA prediction 0.572720027971586 Functional Gain - LOC150776 ENSG00000152117 ncRNA_exonic Human transcribed_processed_pseudogene chr2:132277159 chr2:132277158 . . 0 20 hm7G_associated_SNPs_15506 0 0 1 0 2 LOC150776 chr2:132277239 5'GT 132277239 Upstream 82bp 14865 chr7 34097730 34097730 1 + G T LUSC 34097731 + 34097711 34097751 41 CTTGTGTGAAAGGCAGGACGGAGTGTCGCAATAAGCAGTGC CTTGTGTGAAAGGCAGGACTGAGTGTCGCAATAAGCAGTGC < 41bp 0.548778513609834 0.835137811627266 NA NA prediction 0.572718596034863 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34097731 chr7:34097730 synonymous SNV . 0 20 hm7G_associated_SNPs_15507 0 0 0 0 2 BMPER chr7:34097671 3'AG 34097671 Downstream 60bp 14866 chr7 34097730 34097730 1 + G T LUSC 34097731 + 34097711 34097751 41 CTTGTGTGAAAGGCAGGACGGAGTGTCGCAATAAGCAGTGC CTTGTGTGAAAGGCAGGACTGAGTGTCGCAATAAGCAGTGC < 41bp 0.548778513609834 0.835137811627266 NA NA prediction 0.572718596034863 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34097731 chr7:34097730 synonymous SNV . 0 20 hm7G_associated_SNPs_15507 0 0 0 0 2 BMPER chr7:34097775 5'GT 34097775 Upstream 46bp 14867 chr10 111878371 111878371 1 + G T KIRP 111878372 + 111878352 111878392 41 TCAATATAATAGGAGAAGTGGTTGACCAGGGAAGTACCAAT TCAATATAATAGGAGAAGTTGTTGACCAGGGAAGTACCAAT < 41bp 0.531844344881236 0.818201731891649 NA NA prediction 0.572714774020826 Functional Gain - ADD3 ENSG00000148700 CDS Human protein_coding chr10:111878372 chr10:111878371 synonymous SNV . 0 20 hm7G_associated_SNPs_15508 0 0 1 0 1 ADD3 chr10:111878345 3'AG 111878345 Downstream 27bp 14868 chrX 65479959 65479959 1 + G T LUSC 65479960 + 65479940 65479980 41 AGAATGGCGAGAACTACCGGGCAGATGTGGTGGATCTGTTC AGAATGGCGAGAACTACCGTGCAGATGTGGTGGATCTGTTC < 41bp 0.457895432813901 0.786346751594495 NA NA prediction 0.572693503188991 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65479960 chrX:65479959 synonymous SNV . 0 20 hm7G_associated_SNPs_15510 0 0 1 0 1 HEPH chrX:65479942 3'AG 65479942 Downstream 18bp 14869 chr15 22382670 22382670 1 + G T ESCA 22382671 + 22382651 22382691 41 ATTTATTTCTGGGCAACTTGGCCTTCCTGGATGCATCCTAC ATTTATTTCTGGGCAACTTTGCCTTCCTGGATGCATCCTAC < 41bp 0.5439964974951 0.830332958497742 NA NA prediction 0.572672922005283 Functional Gain - OR4N4 ENSG00000183706 CDS Human protein_coding chr15:22382671 chr15:22382670 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_15512 0 0 0 0 1 OR4N4 chr15:22382742 5'GT 22382742 Upstream 73bp 14870 chrX 47086419 47086419 1 + G T STAD 47086420 + 47086400 47086440 41 AACTGAGGAGACGTGGCCAGGCATCCTGTCCAACGAGGAGT AACTGAGGAGACGTGGCCATGCATCCTGTCCAACGAGGAGT < 41bp 0.564528200400195 0.850855985390903 NA NA prediction 0.572655569981415 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47086420 chrX:47086419 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15513 0 0 1 0 2 CDK16 chrX:47086393 3'AG 47086393 Downstream 27bp 14871 chrX 47086419 47086419 1 + G T STAD 47086420 + 47086400 47086440 41 AACTGAGGAGACGTGGCCAGGCATCCTGTCCAACGAGGAGT AACTGAGGAGACGTGGCCATGCATCCTGTCCAACGAGGAGT < 41bp 0.564528200400195 0.850855985390903 NA NA prediction 0.572655569981415 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47086420 chrX:47086419 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15513 0 0 1 0 2 CDK16 chrX:47086498 5'GT 47086498 Upstream 80bp 14872 chr9 71098904 71098904 1 + G T BLCA 71098905 + 71098885 71098925 41 GGAGCCATGTCTACAGCGTGGCGAAGACGGATAGTTTTGAA GGAGCCATGTCTACAGCGTTGCGAAGACGGATAGTTTTGAA < 41bp 0.469670546423147 0.786320554031779 NA NA prediction 0.572641108063558 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71098905 chr9:71098904 synonymous SNV . 0 20 hm7G_associated_SNPs_15516 0 0 0 0 1 PGM5 chr9:71098964 5'GT 71098964 Upstream 61bp 14873 chr6 150710561 150710561 1 + G T SKCM 150710562 + 150710542 150710582 41 ATAACCACTATCCTGAGAAGGAAATGGTTAAGAGGTCTCAG ATAACCACTATCCTGAGAATGAAATGGTTAAGAGGTCTCAG < 41bp 0.531496569549835 0.817814376596127 NA NA prediction 0.572635614092585 Functional Gain - IYD ENSG00000009765 CDS Human protein_coding chr6:150710562 chr6:150710561 nonsynonymous SNV 0.451 0 20 hm7G_associated_SNPs_15517 0 0 0 0 2 IYD chr6:150710488 3'AG 150710488 Downstream 74bp 14874 chr6 150710561 150710561 1 + G T SKCM 150710562 + 150710542 150710582 41 ATAACCACTATCCTGAGAAGGAAATGGTTAAGAGGTCTCAG ATAACCACTATCCTGAGAATGAAATGGTTAAGAGGTCTCAG < 41bp 0.531496569549835 0.817814376596127 NA NA prediction 0.572635614092585 Functional Gain - IYD ENSG00000009765 CDS Human protein_coding chr6:150710562 chr6:150710561 nonsynonymous SNV 0.451 0 20 hm7G_associated_SNPs_15517 0 0 0 0 2 IYD chr6:150710611 5'GT 150710611 Upstream 51bp 14875 chrX 115574909 115574909 1 + G T GBM 115574910 + 115574890 115574930 41 CAATTTTACCTGCATCAACGGCAGTGAAATTTATCAGCCAG CAATTTTACCTGCATCAACTGCAGTGAAATTTATCAGCCAG < 41bp 0.537143417247322 0.823453066892231 NA NA prediction 0.572619299289818 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115574910 chrX:115574909 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_15518 0 0 0 0 2 SLC6A14 chrX:115574811 3'AG 115574811 Downstream 99bp 14876 chrX 115574909 115574909 1 + G T GBM 115574910 + 115574890 115574930 41 CAATTTTACCTGCATCAACGGCAGTGAAATTTATCAGCCAG CAATTTTACCTGCATCAACTGCAGTGAAATTTATCAGCCAG < 41bp 0.537143417247322 0.823453066892231 NA NA prediction 0.572619299289818 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115574910 chrX:115574909 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_15518 0 0 0 0 2 SLC6A14 chrX:115574958 5'GT 115574958 Upstream 50bp 14877 chr11 4104590 4104590 1 + G T LUAD 4104591 + 4104571 4104611 41 CCAGATTGTCAACAACCCTGGCATCCACTCACTGGTGGCTG CCAGATTGTCAACAACCCTTGCATCCACTCACTGGTGGCTG < 41bp 0.449444146905062 0.786295866193374 NA NA prediction 0.572591732386748 Functional Gain - STIM1 ENSG00000167323 CDS Human protein_coding chr11:4104591 chr11:4104590 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_15520 0 0 1 0 1 STIM1 chr11:4104493 3'AG 4104493 Downstream 98bp 14878 chr3 141497734 141497734 1 + G T LIHC 141497735 + 141497715 141497755 41 CTGGGGAAAGGTGGTTTTGGGGAGGTAAGTGTCTCCCAGTA CTGGGGAAAGGTGGTTTTGTGGAGGTAAGTGTCTCCCAGTA < 41bp 0.528443113429272 0.814722925274354 NA NA prediction 0.572559623690164 Functional Gain - GRK7 ENSG00000114124 CDS Human protein_coding chr3:141497735 chr3:141497734 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15522 0 0 0 0 1 GRK7 chr3:141497738 5'GT 141497738 Upstream 5bp 14879 chr11 5012612 5012612 1 + G T LUAD 5012613 + 5012593 5012633 41 GTCCACAGCCCATGAAGATGGTTGGCCCTTTGATGGGCCAG GTCCACAGCCCATGAAGATTGTTGGCCCTTTGATGGGCCAG < 41bp 0.536640246461198 0.822919644616101 NA NA prediction 0.572558796309806 Functional Gain - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5012613 chr11:5012612 nonsynonymous SNV 0.026 0 20 hm7G_associated_SNPs_15523 0 0 0 0 1 MMP26 chr11:5012601 3'AG 5012601 Downstream 12bp 14880 chr1 155152365 155152365 1 + G T BRCA 155152366 + 155152346 155152386 41 CTGCAACAAGGCCGGCTACGGCGAATACAGTGAAGATGTGC CTGCAACAAGGCCGGCTACTGCGAATACAGTGAAGATGTGC < 41bp 0.4720530830857 0.786278953020758 NA NA prediction 0.572557906041516 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155152366 chr1:155152365 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_15525 0 0 0 0 1 TRIM46 chr1:155152410 5'GT 155152410 Upstream 46bp 14881 chr19 55019224 55019224 1 + G T UCEC 55019225 + 55019205 55019245 41 CATTCCGCCTGGAGAGGGAGGATAGAGCCAAGTACAAAGAT CATTCCGCCTGGAGAGGGATGATAGAGCCAAGTACAAAGAT < 41bp 0.530194749468446 0.816472212484181 NA NA prediction 0.572554926031469 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019225 chr19:55019224 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_15526 0 0 0 0 1 LAIR2 chr19:55019305 5'GT 55019305 Upstream 82bp 14882 chr19 11144181 11144181 1 + G T UCEC 11144182 + 11144162 11144202 41 AGGCCATCCTGGAGCACGAGGAGCAGGATGAGGTGAGCCCA AGGCCATCCTGGAGCACGATGAGCAGGATGAGGTGAGCCCA < 41bp 0.473587270054144 0.786258600583932 NA NA prediction 0.572517201167863 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11144182 chr19:11144181 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_15528 0 0 1 0 1 SMARCA4 chr19:11144193 5'GT 11144193 Upstream 13bp 14883 chr1 64114222 64114222 1 + G T CESC 64114223 + 64114203 64114243 41 GTGAGAAAGATGGACTGTGGGCTGTCCTTGCCTGGCTCTCC GTGAGAAAGATGGACTGTGTGCTGTCCTTGCCTGGCTCTCC < 41bp 0.567497183329478 0.853753092403072 NA NA prediction 0.572511818147188 Functional Gain - PGM1 ENSG00000079739 CDS Human protein_coding chr1:64114223 chr1:64114222 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_15529 0 0 1 0 1 PGM1 chr1:64114188 3'AG 64114188 Downstream 35bp 14884 chr12 67696193 67696193 1 + G T STAD 67696194 + 67696174 67696214 41 GATGCTGTAGTTAGCACAAGGCATGAAATGCTTCCAGAATT GATGCTGTAGTTAGCACAATGCATGAAATGCTTCCAGAATT < 41bp 0.544400700472538 0.83064633822982 NA NA prediction 0.572491275514566 Functional Gain - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67696194 chr12:67696193 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15530 0 0 1 0 1 CAND1 chr12:67696103 3'AG 67696103 Downstream 91bp 14885 chr6 37349069 37349069 1 + G T UCEC 37349070 + 37349050 37349090 41 ACAATTGCATTAATAAGATGGTAAATAATCTGAGCTCAGAA ACAATTGCATTAATAAGATTGTAAATAATCTGAGCTCAGAA < 41bp 0.487105706306375 0.786198302836377 NA NA prediction 0.572396605672754 Functional Gain - RNF8 ENSG00000112130 CDS Human protein_coding chr6:37349070 chr6:37349069 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15533 0 0 1 0 1 RNF8 chr6:37349130 5'GT 37349130 Upstream 62bp 14886 chr15 39881469 39881469 1 + G T UCEC 39881470 + 39881450 39881490 41 GTGTGAGAACACGGACCCCGGCTACAACTGCCTGCCCTGCC GTGTGAGAACACGGACCCCTGCTACAACTGCCTGCCCTGCC < 41bp 0.572801350773168 0.858992411133346 NA NA prediction 0.572382120720357 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39881470 chr15:39881469 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_15534 0 0 1 0 2 THBS1 chr15:39881403 3'AG 39881403 Downstream 67bp 14887 chr15 39881469 39881469 1 + G T UCEC 39881470 + 39881450 39881490 41 GTGTGAGAACACGGACCCCGGCTACAACTGCCTGCCCTGCC GTGTGAGAACACGGACCCCTGCTACAACTGCCTGCCCTGCC < 41bp 0.572801350773168 0.858992411133346 NA NA prediction 0.572382120720357 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39881470 chr15:39881469 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_15534 0 0 1 0 2 THBS1 chr15:39881555 5'GT 39881555 Upstream 87bp 14888 chr1 63307162 63307162 1 + G T UCEC 63307163 + 63307143 63307183 41 GGATCCCAGCTGTACAATAGGATTTTACTGTCGAAATGTTC GGATCCCAGCTGTACAATATGATTTTACTGTCGAAATGTTC < 41bp 0.521760144348544 0.80793680685848 NA NA prediction 0.572353325019872 Functional Gain - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63307163 chr1:63307162 stopgain 1.000 1 20 hm7G_associated_SNPs_15537 0 0 1 0 2 ATG4C chr1:63307099 3'AG 63307099 Downstream 64bp 14889 chr1 63307162 63307162 1 + G T UCEC 63307163 + 63307143 63307183 41 GGATCCCAGCTGTACAATAGGATTTTACTGTCGAAATGTTC GGATCCCAGCTGTACAATATGATTTTACTGTCGAAATGTTC < 41bp 0.521760144348544 0.80793680685848 NA NA prediction 0.572353325019872 Functional Gain - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63307163 chr1:63307162 stopgain 1.000 1 20 hm7G_associated_SNPs_15537 0 0 1 0 2 ATG4C chr1:63307218 5'GT 63307218 Upstream 57bp 14890 chr1 17594354 17594354 1 + G T LUSC 17594355 + 17594335 17594375 41 TGGAAGACATGTCTGTCATGGTCCTGCGGACGCAGGGCCCT TGGAAGACATGTCTGTCATTGTCCTGCGGACGCAGGGCCCT < 41bp 0.458641851365444 0.786159767468458 NA NA prediction 0.572319534936916 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17594355 chr1:17594354 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15539 0 0 0 0 1 PADI3 chr1:17594332 3'AG 17594332 Downstream 23bp 14891 chr1 100382214 100382214 1 + G T LUAD 100382215 + 100382195 100382235 41 ATATTTTTCCAGATTGATGGGCCCGGAGACTACTGCAAAGA ATATTTTTCCAGATTGATGTGCCCGGAGACTACTGCAAAGA < 41bp 0.524929433673251 0.811080309501975 NA NA prediction 0.572301751657448 Functional Gain - AGL ENSG00000162688 CDS Human protein_coding chr1:100382215 chr1:100382214 nonsynonymous SNV 0.901 4 20 hm7G_associated_SNPs_15540 0 0 1 0 2 AGL chr1:100382154 3'AG 100382154 Downstream 61bp 14892 chr1 100382214 100382214 1 + G T LUAD 100382215 + 100382195 100382235 41 ATATTTTTCCAGATTGATGGGCCCGGAGACTACTGCAAAGA ATATTTTTCCAGATTGATGTGCCCGGAGACTACTGCAAAGA < 41bp 0.524929433673251 0.811080309501975 NA NA prediction 0.572301751657448 Functional Gain - AGL ENSG00000162688 CDS Human protein_coding chr1:100382215 chr1:100382214 nonsynonymous SNV 0.901 4 20 hm7G_associated_SNPs_15540 0 0 1 0 2 AGL chr1:100382287 5'GT 100382287 Upstream 74bp 14893 chr6 135517021 135517021 1 + G T ESCA 135517022 + 135517002 135517042 41 ATCTCTGCCAGCGGATCCTGGCTCCCTACCTGAAGAAAGCG ATCTCTGCCAGCGGATCCTTGCTCCCTACCTGAAGAAAGCG < 41bp 0.498131314160592 0.786145141504615 NA NA prediction 0.572290283009231 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135517022 chr6:135517021 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15542 0 0 1 0 2 MYB chr6:135517055 5'GT 135517055 Upstream 35bp 14894 chr6 135517021 135517021 1 + G T ESCA 135517022 + 135517002 135517042 41 ATCTCTGCCAGCGGATCCTGGCTCCCTACCTGAAGAAAGCG ATCTCTGCCAGCGGATCCTTGCTCCCTACCTGAAGAAAGCG < 41bp 0.498131314160592 0.786145141504615 NA NA prediction 0.572290283009231 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135517022 chr6:135517021 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_15542 0 0 1 0 2 MYB chr6:135517092 5'GT 135517092 Upstream 72bp 14895 chr3 25636018 25636018 1 + G T UCEC 25636019 + 25635999 25636039 41 CCTGGTATCCAGACCGCCAGGACCTTGAGGAACCGACAAAA CCTGGTATCCAGACCGCCATGACCTTGAGGAACCGACAAAA < 41bp 0.479626902393383 0.786139214343056 NA NA prediction 0.572278428686113 Functional Gain - RARB ENSG00000077092 CDS Human protein_coding chr3:25636019 chr3:25636018 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15543 0 0 0 0 1 RARB chr3:25636011 3'AG 25636011 Downstream 8bp 14896 chr8 22465560 22465560 1 + G T DLBC 22465561 + 22465541 22465581 41 GCCCGGGGCCCTCATGGACGGTTGGATCAGGGCCGAAGGTA GCCCGGGGCCCTCATGGACTGTTGGATCAGGGCCGAAGGTA < 41bp 0.561949755610149 0.848086927333092 NA NA prediction 0.572274343445886 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22465561 chr8:22465560 nonsynonymous SNV 0.733 4 20 hm7G_associated_SNPs_15544 0 0 1 0 2 CCAR2 chr8:22465482 3'AG 22465482 Downstream 79bp 14897 chr8 22465560 22465560 1 + G T DLBC 22465561 + 22465541 22465581 41 GCCCGGGGCCCTCATGGACGGTTGGATCAGGGCCGAAGGTA GCCCGGGGCCCTCATGGACTGTTGGATCAGGGCCGAAGGTA < 41bp 0.561949755610149 0.848086927333092 NA NA prediction 0.572274343445886 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22465561 chr8:22465560 nonsynonymous SNV 0.733 4 20 hm7G_associated_SNPs_15544 0 0 1 0 2 CCAR2 chr8:22465578 5'GT 22465578 Upstream 19bp 14898 chr7 79818436 79818436 1 + G T STAD 79818437 + 79818417 79818457 41 AAGCTGGTTATTCAGAAGAGGAGTGTAAACAATACAAAGCA AAGCTGGTTATTCAGAAGATGAGTGTAAACAATACAAAGCA < 41bp 0.522807379122148 0.80894220555633 NA NA prediction 0.572269652868364 Functional Gain - GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79818437 chr7:79818436 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15545 0 0 1 0 1 GNAI1 chr7:79818406 3'AG 79818406 Downstream 31bp 14899 chr12 124181004 124181004 1 + G T LAML 124181005 + 124180985 124181025 41 CGAGCTCTAAATATCAACAGGATGAATAATGTCACGACTTT CGAGCTCTAAATATCAACATGATGAATAATGTCACGACTTT < 41bp 0.542425642140037 0.828544576113116 NA NA prediction 0.572237867946158 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181005 chr12:124181004 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_15546 0 0 1 0 2 TCTN2 chr12:124180962 3'AG 124180962 Downstream 43bp 14900 chr12 124181004 124181004 1 + G T LAML 124181005 + 124180985 124181025 41 CGAGCTCTAAATATCAACAGGATGAATAATGTCACGACTTT CGAGCTCTAAATATCAACATGATGAATAATGTCACGACTTT < 41bp 0.542425642140037 0.828544576113116 NA NA prediction 0.572237867946158 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181005 chr12:124181004 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_15546 0 0 1 0 2 TCTN2 chr12:124181042 5'GT 124181042 Upstream 39bp 14901 chr2 228680196 228680196 1 + G T SKCM 228680197 + 228680177 228680217 41 CAACTTTGACTGCTGTCTTGGATACACAGACCGTATTCTTC CAACTTTGACTGCTGTCTTTGATACACAGACCGTATTCTTC < 41bp 0.489793329189483 0.786089022128161 NA NA prediction 0.572178044256323 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680197 chr2:228680196 stopgain 0.004 0 20 hm7G_associated_SNPs_15547 0 0 1 0 3 CCL20 chr2:228680170 3'AG 228680170 Downstream 27bp 14902 chr2 228680196 228680196 1 + G T SKCM 228680197 + 228680177 228680217 41 CAACTTTGACTGCTGTCTTGGATACACAGACCGTATTCTTC CAACTTTGACTGCTGTCTTTGATACACAGACCGTATTCTTC < 41bp 0.489793329189483 0.786089022128161 NA NA prediction 0.572178044256323 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680197 chr2:228680196 stopgain 0.004 0 20 hm7G_associated_SNPs_15547 0 0 1 0 3 CCL20 chr2:228680173 3'AG 228680173 Downstream 24bp 14903 chr2 228680196 228680196 1 + G T SKCM 228680197 + 228680177 228680217 41 CAACTTTGACTGCTGTCTTGGATACACAGACCGTATTCTTC CAACTTTGACTGCTGTCTTTGATACACAGACCGTATTCTTC < 41bp 0.489793329189483 0.786089022128161 NA NA prediction 0.572178044256323 Functional Gain - CCL20 ENSG00000115009 CDS Human protein_coding chr2:228680197 chr2:228680196 stopgain 0.004 0 20 hm7G_associated_SNPs_15547 0 0 1 0 3 CCL20 chr2:228680284 5'GT 228680284 Upstream 89bp 14904 chr22 41623116 41623116 1 + G T UCEC 41623117 + 41623097 41623137 41 GCCCAAACCATGGCTTCAAGGTGGGCATGAAGCTGGAGGCC GCCCAAACCATGGCTTCAATGTGGGCATGAAGCTGGAGGCC < 41bp 0.554251319418812 0.840336098668248 NA NA prediction 0.572169558498872 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41623117 chr22:41623116 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15548 0 0 0 0 1 L3MBTL2 chr22:41623093 3'AG 41623093 Downstream 24bp 14905 chr19 48917269 48917269 1 + G T UCEC 48917270 + 48917250 48917290 41 ACTTCATGAACATCACGTGGGATAACCGGGATTACTCCTTC ACTTCATGAACATCACGTGTGATAACCGGGATTACTCCTTC < 41bp 0.458714070703767 0.786082627990924 NA NA prediction 0.572165255981849 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917270 chr19:48917269 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15549 0 0 1 0 2 GRIN2D chr19:48917248 3'AG 48917248 Downstream 22bp 14906 chr19 48917269 48917269 1 + G T UCEC 48917270 + 48917250 48917290 41 ACTTCATGAACATCACGTGGGATAACCGGGATTACTCCTTC ACTTCATGAACATCACGTGTGATAACCGGGATTACTCCTTC < 41bp 0.458714070703767 0.786082627990924 NA NA prediction 0.572165255981849 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917270 chr19:48917269 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15549 0 0 1 0 2 GRIN2D chr19:48917362 5'GT 48917362 Upstream 94bp 14907 chr5 96320886 96320886 1 + G T SARC 96320887 + 96320867 96320907 41 TTATCATCAAGATCATAAGGGATGAGCAATACACCGCTTTA TTATCATCAAGATCATAAGTGATGAGCAATACACCGCTTTA < 41bp 0.478734050071043 0.786064421698546 NA NA prediction 0.572128843397092 Functional Gain - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96320887 chr5:96320886 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_15552 0 0 1 0 1 LNPEP chr5:96320922 5'GT 96320922 Upstream 37bp 14908 chr3 37343786 37343786 1 + G T UCEC 37343787 + 37343767 37343807 41 AGATGACTACCCAGGGAGAGGAATTACGGGAACAGAAAGAA AGATGACTACCCAGGGAGATGAATTACGGGAACAGAAAGAA < 41bp 0.479526497559515 0.78605507040527 NA NA prediction 0.57211014081054 Functional Gain - GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37343787 chr3:37343786 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_15554 0 0 1 0 1 GOLGA4 chr3:37343823 5'GT 37343823 Upstream 38bp 14909 chr3 108072579 108072579 1 + G T LUSC 108072580 + 108072560 108072600 41 AATTTACACCTGCTATGTAGGAACAGCAATTCAAGTGATTA AATTTACACCTGCTATGTATGAACAGCAATTCAAGTGATTA < 41bp 0.526492743323542 0.812527743828147 NA NA prediction 0.572070001009209 Functional Gain - HHLA2 ENSG00000114455 CDS Human protein_coding chr3:108072580 chr3:108072579 stopgain 0.599 0 20 hm7G_associated_SNPs_15555 0 0 0 0 2 HHLA2 chr3:108072536 3'AG 108072536 Downstream 44bp 14910 chr3 108072579 108072579 1 + G T LUSC 108072580 + 108072560 108072600 41 AATTTACACCTGCTATGTAGGAACAGCAATTCAAGTGATTA AATTTACACCTGCTATGTATGAACAGCAATTCAAGTGATTA < 41bp 0.526492743323542 0.812527743828147 NA NA prediction 0.572070001009209 Functional Gain - HHLA2 ENSG00000114455 CDS Human protein_coding chr3:108072580 chr3:108072579 stopgain 0.599 0 20 hm7G_associated_SNPs_15555 0 0 0 0 2 HHLA2 chr3:108072627 5'GT 108072627 Upstream 49bp 14911 chr1 231124149 231124149 1 + G T LUSC 231124150 + 231124130 231124170 41 CTATATTGTGCAAAGCTCAGGCCTACAGACATATTCTTTTC CTATATTGTGCAAAGCTCATGCCTACAGACATATTCTTTTC < 41bp 0.490810374673829 0.786034343579499 NA NA prediction 0.572068687158998 Functional Gain - ARV1 ENSG00000173409 CDS Human protein_coding chr1:231124150 chr1:231124149 nonsynonymous SNV 0.848 2 20 hm7G_associated_SNPs_15556 0 0 1 0 2 ARV1 chr1:231124066 3'AG 231124066 Downstream 84bp 14912 chr1 231124149 231124149 1 + G T LUSC 231124150 + 231124130 231124170 41 CTATATTGTGCAAAGCTCAGGCCTACAGACATATTCTTTTC CTATATTGTGCAAAGCTCATGCCTACAGACATATTCTTTTC < 41bp 0.490810374673829 0.786034343579499 NA NA prediction 0.572068687158998 Functional Gain - ARV1 ENSG00000173409 CDS Human protein_coding chr1:231124150 chr1:231124149 nonsynonymous SNV 0.848 2 20 hm7G_associated_SNPs_15556 0 0 1 0 2 ARV1 chr1:231124185 5'GT 231124185 Upstream 37bp 14913 chr2 39171058 39171058 1 + G T UCEC 39171059 + 39171039 39171079 41 AAGCTAAAAGACAGACTGTGGCCCTGGAACTGCTTGAATCT AAGCTAAAAGACAGACTGTTGCCCTGGAACTGCTTGAATCT < 41bp 0.547563322059466 0.833579531982801 NA NA prediction 0.572032419846671 Functional Gain - ARHGEF33 ENSG00000214694 CDS Human protein_coding chr2:39171059 chr2:39171058 synonymous SNV . 0 20 hm7G_associated_SNPs_15557 0 0 0 0 1 ARHGEF33 chr2:39171042 3'AG 39171042 Downstream 17bp 14914 chr12 9087722 9087722 1 + G T COAD 9087723 + 9087703 9087743 41 AATGTTTTCTGGGACAGGTGGGTTGTTCTCAGTTACTGAAG AATGTTTTCTGGGACAGGTTGGTTGTTCTCAGTTACTGAAG < 41bp 0.548380720917126 0.834383746957387 NA NA prediction 0.572006052080522 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9087723 chr12:9087722 synonymous SNV . 0 20 hm7G_associated_SNPs_15559 0 0 0 0 1 PHC1 chr12:9087720 3'AG 9087720 Downstream 3bp 14915 chr20 29632693 29632693 1 + G T LUSC 29632694 + 29632674 29632714 41 TAAAAAGGCTCAGAAAGATGGATTTTTGCATGAGACGCTTC TAAAAAGGCTCAGAAAGATTGATTTTTGCATGAGACGCTTC < 41bp 0.526876567550292 0.812869618790711 NA NA prediction 0.571986102480836 Functional Gain - FRG1BP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29632694 chr20:29632693 stopgain 0.998 0 20 hm7G_associated_SNPs_15561 0 0 1 0 2 FRG1BP chr20:29632611 3'AG 29632611 Downstream 83bp 14916 chr20 29632693 29632693 1 + G T LUSC 29632694 + 29632674 29632714 41 TAAAAAGGCTCAGAAAGATGGATTTTTGCATGAGACGCTTC TAAAAAGGCTCAGAAAGATTGATTTTTGCATGAGACGCTTC < 41bp 0.526876567550292 0.812869618790711 NA NA prediction 0.571986102480836 Functional Gain - FRG1BP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29632694 chr20:29632693 stopgain 0.998 0 20 hm7G_associated_SNPs_15561 0 0 1 0 2 FRG1BP chr20:29632721 5'GT 29632721 Upstream 29bp 14917 chr3 111432950 111432950 1 + G T LUSC 111432951 + 111432931 111432971 41 TGCCCGGGGCTTGGTTGGGGGCCTCAAGAACACGCTGGTTC TGCCCGGGGCTTGGTTGGGTGCCTCAAGAACACGCTGGTTC < 41bp 0.544639053060494 0.830605707386148 NA NA prediction 0.571933308651308 Functional Gain - PLCXD2 ENSG00000240891 CDS Human protein_coding chr3:111432951 chr3:111432950 nonsynonymous SNV 0.947 3 20 hm7G_associated_SNPs_15564 0 0 0 0 1 PLCXD2 chr3:111432975 5'GT 111432975 Upstream 26bp 14918 chr3 14989310 14989310 1 - C A rs564563191 14989309 - 14989289 14989329 41 AGCCCGGGCTCCCGGTGTCGGCGGATGGCGGGAGCCCGGGG AGCCCGGGCTCCCGGTGTCTGCGGATGGCGGGAGCCCGGGG < 41bp 0.505538271211489 0.791475175067469 NA NA prediction 0.571873807711962 Functional Gain - FGD5-AS1 ENSG00000225733 ncRNA_exonic Human antisense chr3:14989309 chr3:14989310 . . 0 20 hm7G_associated_SNPs_15568 0 0 0 0 1 FGD5-AS1 chr3:14989246 5'GT 14989246 Upstream 65bp 14919 chr7 66482902 66482902 1 + G T LUSC 66482903 + 66482883 66482923 41 ATCGTGTGATGAGTCGAGGGGAGGGCGACTGCGACGTGGTT ATCGTGTGATGAGTCGAGGTGAGGGCGACTGCGACGTGGTT < 41bp 0.55037470236885 0.836306689759163 NA NA prediction 0.571863974780625 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66482903 chr7:66482902 synonymous SNV . 0 20 hm7G_associated_SNPs_15569 0 0 0 0 1 TYW1 chr7:66482840 3'AG 66482840 Downstream 63bp 14920 chr1 156883815 156883815 1 + G T UCEC 156883816 + 156883796 156883836 41 AGGCAGCCTCCTCAGTTCTGGGACAGCCAGAGGCGGCGGCA AGGCAGCCTCCTCAGTTCTTGGACAGCCAGAGGCGGCGGCA < 41bp 0.567338729810815 0.853264412101406 NA NA prediction 0.571851364581183 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883816 chr1:156883815 nonsynonymous SNV 0.495 1 20 hm7G_associated_SNPs_15570 0 0 0 0 1 PEAR1 chr1:156883892 5'GT 156883892 Upstream 78bp 14921 chr2 143685300 143685300 1 + G T UCEC 143685301 + 143685281 143685321 41 GTATTGTAGGCCTTATGAAGGACATTGTAGGTAAGTACAAA GTATTGTAGGCCTTATGAATGACATTGTAGGTAAGTACAAA < 41bp 0.531446606555778 0.817360794082392 NA NA prediction 0.571828375053226 Functional Gain - KYNU ENSG00000115919 CDS Human protein_coding chr2:143685301 chr2:143685300 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_15572 0 0 1 0 2 KYNU chr2:143685228 3'AG 143685228 Downstream 73bp 14922 chr2 143685300 143685300 1 + G T UCEC 143685301 + 143685281 143685321 41 GTATTGTAGGCCTTATGAAGGACATTGTAGGTAAGTACAAA GTATTGTAGGCCTTATGAATGACATTGTAGGTAAGTACAAA < 41bp 0.531446606555778 0.817360794082392 NA NA prediction 0.571828375053226 Functional Gain - KYNU ENSG00000115919 CDS Human protein_coding chr2:143685301 chr2:143685300 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_15572 0 0 1 0 2 KYNU chr2:143685310 5'GT 143685310 Upstream 11bp 14923 chr6 43167815 43167815 1 + G T UCEC 43167816 + 43167796 43167836 41 CTGCTGGGCTGTGAGCTTCGGGACCTGGTGACAGAGTGTGA CTGCTGGGCTGTGAGCTTCTGGACCTGGTGACAGAGTGTGA < 41bp 0.458349358622147 0.785907786928507 NA NA prediction 0.571815573857014 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43167816 chr6:43167815 nonsynonymous SNV 0.961 2 20 hm7G_associated_SNPs_15573 0 0 1 0 1 CUL9 chr6:43167894 5'GT 43167894 Upstream 80bp 14924 chr8 104312473 104312473 1 + G T UCEC 104312474 + 104312454 104312494 41 CGTTTTTCCCTAATCTGATGGGTCATTATGACCAGAGTATT CGTTTTTCCCTAATCTGATTGGTCATTATGACCAGAGTATT < 41bp 0.550047904927127 0.835917889001815 NA NA prediction 0.571739968149375 Functional Gain - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104312474 chr8:104312473 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_15578 0 0 0 0 2 FZD6 chr8:104312428 3'AG 104312428 Downstream 46bp 14925 chr8 104312473 104312473 1 + G T UCEC 104312474 + 104312454 104312494 41 CGTTTTTCCCTAATCTGATGGGTCATTATGACCAGAGTATT CGTTTTTCCCTAATCTGATTGGTCATTATGACCAGAGTATT < 41bp 0.550047904927127 0.835917889001815 NA NA prediction 0.571739968149375 Functional Gain - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104312474 chr8:104312473 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_15578 0 0 0 0 2 FZD6 chr8:104312512 5'GT 104312512 Upstream 40bp 14926 chr12 8288296 8288296 1 + G T GBM 8288297 + 8288277 8288317 41 AGGACTGTGCTAGAATGGAGGCTCACCTGCTGGTGATAAAC AGGACTGTGCTAGAATGGATGCTCACCTGCTGGTGATAAAC < 41bp 0.545793721157643 0.831652243835142 NA NA prediction 0.571717045354998 Functional Gain - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8288297 chr12:8288296 nonsynonymous SNV 0.208 0 20 hm7G_associated_SNPs_15579 0 0 0 0 1 CLEC4A chr12:8288332 5'GT 8288332 Upstream 37bp 14927 chr1 171759628 171759628 1 + G T LUAD 171759629 + 171759609 171759649 41 AAGGACAGGAAGAAGCAGCGGCCTGCTGATGCGGAGGACCT AAGGACAGGAAGAAGCAGCTGCCTGCTGATGCGGAGGACCT < 41bp 0.558400967728801 0.844251768677682 NA NA prediction 0.571701601897763 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759629 chr1:171759628 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_15580 0 0 1 0 1 METTL13 chr1:171759592 3'AG 171759592 Downstream 37bp 14928 chr1 160147389 160147389 1 + G T LUAD 160147390 + 160147370 160147410 41 TAGGCCTGTTGATCTGCTGGGCATCCGCCTCCACTGGGAAG TAGGCCTGTTGATCTGCTGTGCATCCGCCTCCACTGGGAAG < 41bp 0.45788354122406 0.785844383718487 NA NA prediction 0.571688767436973 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160147390 chr1:160147389 nonsynonymous SNV 0.860 5 20 hm7G_associated_SNPs_15582 0 0 0 0 2 ATP1A4 chr1:160147309 3'AG 160147309 Downstream 81bp 14929 chr1 160147389 160147389 1 + G T LUAD 160147390 + 160147370 160147410 41 TAGGCCTGTTGATCTGCTGGGCATCCGCCTCCACTGGGAAG TAGGCCTGTTGATCTGCTGTGCATCCGCCTCCACTGGGAAG < 41bp 0.45788354122406 0.785844383718487 NA NA prediction 0.571688767436973 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160147390 chr1:160147389 nonsynonymous SNV 0.860 5 20 hm7G_associated_SNPs_15582 0 0 0 0 2 ATP1A4 chr1:160147454 5'GT 160147454 Upstream 66bp 14930 chr3 101572000 101572000 1 + G T LUAD 101572001 + 101571981 101572021 41 ATCTCAATGAACCCAAACAGGAGAGCAGTGCTGATCTGCTT ATCTCAATGAACCCAAACATGAGAGCAGTGCTGATCTGCTT < 41bp 0.47863314849339 0.78584403009621 NA NA prediction 0.57168806019242 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101572001 chr3:101572000 nonsynonymous SNV 0.101 0 20 hm7G_associated_SNPs_15583 0 0 1 0 2 NFKBIZ chr3:101571935 3'AG 101571935 Downstream 66bp 14931 chr3 101572000 101572000 1 + G T LUAD 101572001 + 101571981 101572021 41 ATCTCAATGAACCCAAACAGGAGAGCAGTGCTGATCTGCTT ATCTCAATGAACCCAAACATGAGAGCAGTGCTGATCTGCTT < 41bp 0.47863314849339 0.78584403009621 NA NA prediction 0.57168806019242 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101572001 chr3:101572000 nonsynonymous SNV 0.101 0 20 hm7G_associated_SNPs_15583 0 0 1 0 2 NFKBIZ chr3:101572078 5'GT 101572078 Upstream 79bp 14932 chr16 1398189 1398189 1 + G T LUAD 1398190 + 1398170 1398210 41 TCCACCAACGACTTCGCTGGGGAGGCGGCCCTCGGCCTAGG TCCACCAACGACTTCGCTGTGGAGGCGGCCCTCGGCCTAGG < 41bp 0.559670971333027 0.84551302178392 NA NA prediction 0.571684100901785 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1398190 chr16:1398189 nonsynonymous SNV 0.166 5 20 hm7G_associated_SNPs_15584 0 0 0 0 1 BAIAP3 chr16:1398097 3'AG 1398097 Downstream 93bp 14933 chr17 79671702 79671702 1 + G T COAD 79671703 + 79671683 79671723 41 TGTCGGGCTTGTGCCGATGGGTGGTGTGATGTCTGGGGCTG TGTCGGGCTTGTGCCGATGTGTGGTGTGATGTCTGGGGCTG < 41bp 0.461295679029363 0.785830899615237 NA NA prediction 0.571661799230474 Functional Gain - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671703 chr17:79671702 nonsynonymous SNV 0.024 4 20 hm7G_associated_SNPs_15586 0 0 1 0 2 MRPL12 chr17:79671663 3'AG 79671663 Downstream 40bp 14934 chr17 79671702 79671702 1 + G T COAD 79671703 + 79671683 79671723 41 TGTCGGGCTTGTGCCGATGGGTGGTGTGATGTCTGGGGCTG TGTCGGGCTTGTGCCGATGTGTGGTGTGATGTCTGGGGCTG < 41bp 0.461295679029363 0.785830899615237 NA NA prediction 0.571661799230474 Functional Gain - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671703 chr17:79671702 nonsynonymous SNV 0.024 4 20 hm7G_associated_SNPs_15586 0 0 1 0 2 MRPL12 chr17:79671746 5'GT 79671746 Upstream 45bp 14935 chr11 44228501 44228501 1 + G T LUAD 44228502 + 44228482 44228522 41 CTCTGACGAGCTGCAATTTGGTTATGAGGTAAGGAGGTTTT CTCTGACGAGCTGCAATTTTGTTATGAGGTAAGGAGGTTTT < 41bp 0.530282746384011 0.81611107781459 NA NA prediction 0.571656662861159 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44228502 chr11:44228501 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_15587 0 0 1 0 1 EXT2 chr11:44228509 5'GT 44228509 Upstream 9bp 14936 chr6 25619690 25619690 1 + G T LUSC 25619691 + 25619671 25619711 41 TCAGTTTCAAGGAGAAGCTGGGGCCAGCAGGCCCAGGAGTA TCAGTTTCAAGGAGAAGCTTGGGCCAGCAGGCCCAGGAGTA < 41bp 0.526177591340086 0.811979320882231 NA NA prediction 0.57160345908429 Functional Gain - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25619691 chr6:25619690 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_15591 0 0 0 0 1 CARMIL1 chr6:25619675 3'AG 25619675 Downstream 16bp 14937 chr19 7734314 7734314 1 + G T LUSC 7734315 + 7734295 7734335 41 TCAATGAGAGGATCCAGGAGGTCGCCGGCTCCCTAAGTGAG TCAATGAGAGGATCCAGGATGTCGCCGGCTCCCTAAGTGAG < 41bp 0.47936915990247 0.785766197330211 NA NA prediction 0.571532394660422 Functional Gain - RETN ENSG00000104918 CDS Human protein_coding chr19:7734315 chr19:7734314 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_15592 0 0 0 0 1 RETN chr19:7734330 5'GT 7734330 Upstream 17bp 14938 chr1 53347235 53347235 1 + G T UCEC 53347236 + 53347216 53347256 41 TACTCTGTAGCAGGGAAATGGAAGTCAGCTATTTTGCTGCA TACTCTGTAGCAGGGAAATTGAAGTCAGCTATTTTGCTGCA < 41bp 0.542179962782745 0.827925392464781 NA NA prediction 0.571490859364071 Functional Gain - ZYG11A ENSG00000203995 CDS Human protein_coding chr1:53347236 chr1:53347235 nonsynonymous SNV 0.917 0 20 hm7G_associated_SNPs_15594 0 0 1 0 1 ZYG11A chr1:53347143 3'AG 53347143 Downstream 93bp 14939 chr19 52076639 52076639 1 + G T UCEC 52076640 + 52076620 52076660 41 TCCTGGGTCCAGAGAAGCAGGATGGATCTTGCGAGGTAAAC TCCTGGGTCCAGAGAAGCATGATGGATCTTGCGAGGTAAAC < 41bp 0.5380862842234 0.823829715530241 NA NA prediction 0.571486862613681 Functional Gain - ZNF175 ENSG00000105497 CDS Human protein_coding chr19:52076640 chr19:52076639 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_15595 0 0 0 0 1 ZNF175 chr19:52076654 5'GT 52076654 Upstream 16bp 14940 chr9 35679202 35679202 1 + G T UCEC 35679203 + 35679183 35679223 41 CTCAGAGACTCAGGTCCCAGGACTGGACATATCTGCACTCC CTCAGAGACTCAGGTCCCATGACTGGACATATCTGCACTCC < 41bp 0.550896915415282 0.836635544086946 NA NA prediction 0.571477257343328 Functional Gain - CA9 ENSG00000107159 CDS Human protein_coding chr9:35679203 chr9:35679202 stopgain 0.646 1 20 hm7G_associated_SNPs_15596 0 0 1 0 1 CA9 chr9:35679182 3'AG 35679182 Downstream 21bp 14941 chr8 22412492 22412492 1 + G T UCEC 22412493 + 22412473 22412513 41 GAGATGCTTCCCAGCACCCGGGTAGGTCTGCTCAGGAGCCT GAGATGCTTCCCAGCACCCTGGTAGGTCTGCTCAGGAGCCT < 41bp 0.454702797184292 0.785733173052906 NA NA prediction 0.571466346105811 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22412493 chr8:22412492 synonymous SNV . 0 20 hm7G_associated_SNPs_15597 0 0 0 0 1 SORBS3 chr8:22412493 5'GT 22412493 Upstream 2bp 14942 chr4 184587440 184587440 1 + G T LGG 184587441 + 184587421 184587461 41 TGAGTGGTACATTCCTAAAGGGATCTTAAAGACTGGCTGGA TGAGTGGTACATTCCTAAATGGATCTTAAAGACTGGCTGGA < 41bp 0.544895695475452 0.830627079592043 NA NA prediction 0.571462768233182 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184587441 chr4:184587440 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_15598 0 0 0 0 1 TRAPPC11 chr4:184587410 3'AG 184587410 Downstream 31bp 14943 chr11 36669597 36669597 1 + G T UCEC 36669598 + 36669578 36669618 41 TTCCAGGAGAAGTGGAGCAGGATGTAAGCACCAGCATTCCT TTCCAGGAGAAGTGGAGCATGATGTAAGCACCAGCATTCCT < 41bp 0.54047393154815 0.82620242957095 NA NA prediction 0.571456996045599 Functional Gain - C11orf74 ENSG00000166352 CDS Human protein_coding chr11:36669598 chr11:36669597 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_15599 0 0 0 2 1 C11orf74 chr11:36669566 3'AG 36669566 Downstream 32bp 14944 chr17 55065102 55065102 1 + G T UCEC 55065103 + 55065083 55065123 41 GATAATCCCGTGGGCACTGGGTTCAGTTATGTGAATGGTAG GATAATCCCGTGGGCACTGTGTTCAGTTATGTGAATGGTAG < 41bp 0.543538646243434 0.829261551531215 NA NA prediction 0.571445810575563 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55065103 chr17:55065102 nonsynonymous SNV 0.686 5 20 hm7G_associated_SNPs_15600 0 0 1 0 1 SCPEP1 chr17:55065056 3'AG 55065056 Downstream 47bp 14945 chr18 63489412 63489412 1 + G T STAD 63489413 + 63489393 63489433 41 TATGGTTGGTCAAAATGGAGGACTGTCAGGAACTACATCAG TATGGTTGGTCAAAATGGATGACTGTCAGGAACTACATCAG < 41bp 0.535317477788751 0.821030126439334 NA NA prediction 0.571425297301164 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63489413 chr18:63489412 stopgain 1.000 1 20 hm7G_associated_SNPs_15602 0 0 1 0 2 CDH7 chr18:63489317 3'AG 63489317 Downstream 96bp 14946 chr18 63489412 63489412 1 + G T STAD 63489413 + 63489393 63489433 41 TATGGTTGGTCAAAATGGAGGACTGTCAGGAACTACATCAG TATGGTTGGTCAAAATGGATGACTGTCAGGAACTACATCAG < 41bp 0.535317477788751 0.821030126439334 NA NA prediction 0.571425297301164 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63489413 chr18:63489412 stopgain 1.000 1 20 hm7G_associated_SNPs_15602 0 0 1 0 2 CDH7 chr18:63489484 5'GT 63489484 Upstream 73bp 14947 chr11 72553855 72553855 1 - C A UCEC 72553854 - 72553834 72553874 41 AAGCACTTTATGATTATGAGGGCCAGACAGATGATGAGTTA AAGCACTTTATGATTATGATGGCCAGACAGATGATGAGTTA < 41bp 0.477166612003361 0.785707963998567 NA NA prediction 0.571415927997134 Functional Gain - FCHSD2 ENSG00000137478 CDS Human protein_coding chr11:72553854 chr11:72553855 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_15603 0 0 1 0 1 FCHSD2 chr11:72553886 3'AG 72553886 Downstream 32bp 14948 chr1 156130754 156130754 1 + G T ESCA 156130755 + 156130735 156130775 41 TCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTTTGAC TCGTCTACTTCTTCTTCGATGAGACAGCCAGCGAGTTTGAC < 41bp 0.453660537960566 0.785703314431788 NA NA prediction 0.571406628863577 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156130755 chr1:156130754 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_15604 0 0 0 0 2 SEMA4A chr1:156130696 3'AG 156130696 Downstream 59bp 14949 chr1 156130754 156130754 1 + G T ESCA 156130755 + 156130735 156130775 41 TCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTTTGAC TCGTCTACTTCTTCTTCGATGAGACAGCCAGCGAGTTTGAC < 41bp 0.453660537960566 0.785703314431788 NA NA prediction 0.571406628863577 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156130755 chr1:156130754 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_15604 0 0 0 0 2 SEMA4A chr1:156130820 5'GT 156130820 Upstream 67bp 14950 chr1 153520938 153520938 1 - C A LUSC 153520937 - 153520917 153520957 41 CCAGGCCTCTGGAGCAGGCGGTAGCTGCCATCGTGTGCACC CCAGGCCTCTGGAGCAGGCTGTAGCTGCCATCGTGTGCACC < 41bp 0.546936353825714 0.832639026172081 NA NA prediction 0.571405344692735 Functional Gain - S100A3 ENSG00000188015 CDS Human protein_coding chr1:153520937 chr1:153520938 synonymous SNV . 0 20 hm7G_associated_SNPs_15605 0 0 0 0 1 LOC101928034 chr1:153520966 3'AG 153520966 Downstream 29bp 14951 chrX 152818564 152818564 1 + G T UCEC 152818565 + 152818545 152818585 41 GACCGGGACGACATGGTGAGGAAGATCATCGAGCCGATGGC GACCGGGACGACATGGTGATGAAGATCATCGAGCCGATGGC < 41bp 0.453773466392838 0.785693911755021 NA NA prediction 0.571387823510041 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152818565 chrX:152818564 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15606 0 0 0 0 1 ATP2B3 chrX:152818493 3'AG 152818493 Downstream 72bp 14952 chr11 67176473 67176473 1 + G T UCEC 67176474 + 67176454 67176494 41 CAGAGTACTGTTCCGTGTGGGGCTGACACTGGTGCGCCTGG CAGAGTACTGTTCCGTGTGTGGCTGACACTGGTGCGCCTGG < 41bp 0.461195687742129 0.785679922989415 NA NA prediction 0.571359845978831 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67176474 chr11:67176473 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15608 0 0 0 0 1 TBC1D10C chr11:67176450 3'AG 67176450 Downstream 24bp 14953 chr10 121674283 121674283 1 + G T LUAD 121674284 + 121674264 121674304 41 TTTGGTGTTTGTGGTGCATGGCATTGGACCTGTGTGTGACT TTTGGTGTTTGTGGTGCATTGCATTGGACCTGTGTGTGACT < 41bp 0.458868049833104 0.785669811844814 NA NA prediction 0.571339623689627 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121674284 chr10:121674283 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_15611 0 0 1 0 2 SEC23IP chr10:121674242 3'AG 121674242 Downstream 42bp 14954 chr10 121674283 121674283 1 + G T LUAD 121674284 + 121674264 121674304 41 TTTGGTGTTTGTGGTGCATGGCATTGGACCTGTGTGTGACT TTTGGTGTTTGTGGTGCATTGCATTGGACCTGTGTGTGACT < 41bp 0.458868049833104 0.785669811844814 NA NA prediction 0.571339623689627 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121674284 chr10:121674283 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_15611 0 0 1 0 2 SEC23IP chr10:121674331 5'GT 121674331 Upstream 49bp 14955 chr10 126672220 126672220 1 + G T UCEC 126672221 + 126672201 126672241 41 CCTCTGGTTGACAGTGAAAGGAAGCTACTCCATGTGCACTT CCTCTGGTTGACAGTGAAATGAAGCTACTCCATGTGCACTT < 41bp 0.478665638519501 0.785662215901495 NA NA prediction 0.57132443180299 Functional Gain - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126672221 chr10:126672220 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_15613 0 0 1 0 1 ZRANB1 chr10:126672257 5'GT 126672257 Upstream 38bp 14956 chr2 95541392 95541392 1 + G T COAD 95541393 + 95541373 95541413 41 CACTGAAGCAGGCCATCAAGGACAAAGAGGCACCTCTGCAC CACTGAAGCAGGCCATCAATGACAAAGAGGCACCTCTGCAC < 41bp 0.556888657841435 0.842550345901012 NA NA prediction 0.571323376119153 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95541393 chr2:95541392 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_15614 0 0 0 0 2 TEKT4 chr2:95541333 3'AG 95541333 Downstream 60bp 14957 chr2 95541392 95541392 1 + G T COAD 95541393 + 95541373 95541413 41 CACTGAAGCAGGCCATCAAGGACAAAGAGGCACCTCTGCAC CACTGAAGCAGGCCATCAATGACAAAGAGGCACCTCTGCAC < 41bp 0.556888657841435 0.842550345901012 NA NA prediction 0.571323376119153 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95541393 chr2:95541392 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_15614 0 0 0 0 2 TEKT4 chr2:95541487 5'GT 95541487 Upstream 96bp 14958 chr2 169939909 169939909 1 + G T STAD 169939910 + 169939890 169939930 41 CTGACTGGCTGACACTAGAGGACTACAGAGAACCTATTGAA CTGACTGGCTGACACTAGATGACTACAGAGAACCTATTGAA < 41bp 0.53659311577513 0.822244541749098 NA NA prediction 0.571302851947935 Functional Gain - DHRS9 ENSG00000073737 CDS Human protein_coding chr2:169939910 chr2:169939909 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_15616 0 0 0 0 1 DHRS9 chr2:169939839 3'AG 169939839 Downstream 71bp 14959 chr17 53237236 53237236 1 + G T STAD 53237237 + 53237217 53237257 41 GCTCAGAGGAGAATGAAGAGGATTGCTCTAGAGAACTCCCC GCTCAGAGGAGAATGAAGATGATTGCTCTAGAGAACTCCCC < 41bp 0.492324253411728 0.785648594027843 NA NA prediction 0.571297188055687 Functional Gain - STXBP4 ENSG00000166263 CDS Human protein_coding chr17:53237237 chr17:53237236 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_15618 0 0 1 0 1 STXBP4 chr17:53237158 3'AG 53237158 Downstream 79bp 14960 chr4 159756589 159756589 1 + G T STAD 159756590 + 159756570 159756610 41 AGTTGATATGCCAAGCAGAGGACAGAATGAAGACAGGGACA AGTTGATATGCCAAGCAGATGACAGAATGAAGACAGGGACA < 41bp 0.54036255371671 0.826009220515438 NA NA prediction 0.571293333597455 Functional Gain - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159756590 chr4:159756589 stopgain 0.987 0 20 hm7G_associated_SNPs_15619 0 0 1 0 2 FNIP2 chr4:159756557 3'AG 159756557 Downstream 33bp 14961 chr4 159756589 159756589 1 + G T STAD 159756590 + 159756570 159756610 41 AGTTGATATGCCAAGCAGAGGACAGAATGAAGACAGGGACA AGTTGATATGCCAAGCAGATGACAGAATGAAGACAGGGACA < 41bp 0.54036255371671 0.826009220515438 NA NA prediction 0.571293333597455 Functional Gain - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159756590 chr4:159756589 stopgain 0.987 0 20 hm7G_associated_SNPs_15619 0 0 1 0 2 FNIP2 chr4:159756628 5'GT 159756628 Upstream 40bp 14962 chr15 59399588 59399588 1 + G T LUSC 59399589 + 59399569 59399609 41 AAGAGTCATGTGACTATTAGGCGAACTGTTTTAGAAGAAAT AAGAGTCATGTGACTATTATGCGAACTGTTTTAGAAGAAAT < 41bp 0.475876486120948 0.785640308668444 NA NA prediction 0.571280617336887 Functional Gain - CCNB2 ENSG00000157456 CDS Human protein_coding chr15:59399589 chr15:59399588 nonsynonymous SNV 0.918 3 20 hm7G_associated_SNPs_15621 0 0 1 0 2 CCNB2 chr15:59399521 3'AG 59399521 Downstream 68bp 14963 chr15 59399588 59399588 1 + G T LUSC 59399589 + 59399569 59399609 41 AAGAGTCATGTGACTATTAGGCGAACTGTTTTAGAAGAAAT AAGAGTCATGTGACTATTATGCGAACTGTTTTAGAAGAAAT < 41bp 0.475876486120948 0.785640308668444 NA NA prediction 0.571280617336887 Functional Gain - CCNB2 ENSG00000157456 CDS Human protein_coding chr15:59399589 chr15:59399588 nonsynonymous SNV 0.918 3 20 hm7G_associated_SNPs_15621 0 0 1 0 2 CCNB2 chr15:59399649 5'GT 59399649 Upstream 62bp 14964 chr2 162813677 162813677 1 + G T LUSC 162813678 + 162813658 162813698 41 CCCAAATTTCTCGGCATTCGGGAGCAAAGGGTTACTGGGCT CCCAAATTTCTCGGCATTCTGGAGCAAAGGGTTACTGGGCT < 41bp 0.514959084372114 0.800595658578231 NA NA prediction 0.571273148412234 Functional Gain - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162813678 chr2:162813677 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15622 0 0 0 0 1 SLC4A10 chr2:162813750 5'GT 162813750 Upstream 74bp 14965 chr22 44527420 44527420 1 + G T COAD 44527421 + 44527401 44527441 41 GGTGACACAGTCCGAAATAGGGCAGAAACAGAAGCTGCAGA GGTGACACAGTCCGAAATATGGCAGAAACAGAAGCTGCAGA < 41bp 0.560940428487604 0.846575254851456 NA NA prediction 0.571269652727705 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44527421 chr22:44527420 nonsynonymous SNV 0.643 5 20 hm7G_associated_SNPs_15623 0 0 1 0 2 PARVB chr22:44527367 3'AG 44527367 Downstream 54bp 14966 chr22 44527420 44527420 1 + G T COAD 44527421 + 44527401 44527441 41 GGTGACACAGTCCGAAATAGGGCAGAAACAGAAGCTGCAGA GGTGACACAGTCCGAAATATGGCAGAAACAGAAGCTGCAGA < 41bp 0.560940428487604 0.846575254851456 NA NA prediction 0.571269652727705 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44527421 chr22:44527420 nonsynonymous SNV 0.643 5 20 hm7G_associated_SNPs_15623 0 0 1 0 2 PARVB chr22:44527507 5'GT 44527507 Upstream 88bp 14967 chr2 37032673 37032673 1 + G T BLCA 37032674 + 37032654 37032694 41 GGTGGTGGTGATGGTGGATGGCTGGCCCACGGACAAAGTGG GGTGGTGGTGATGGTGGATTGCTGGCCCACGGACAAAGTGG < 41bp 0.568172466097821 0.85379845870373 NA NA prediction 0.571251985211819 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:37032674 chr2:37032673 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_15624 0 0 0 0 1 VIT chr2:37032581 3'AG 37032581 Downstream 93bp 14968 chr6 106992758 106992758 1 + G T UCEC 106992759 + 106992739 106992779 41 GAATTGTTGCTAATTTAAAGGAGACTGGATATGGAGTGAAG GAATTGTTGCTAATTTAAATGAGACTGGATATGGAGTGAAG < 41bp 0.473801208744558 0.785619436494734 NA NA prediction 0.571238872989469 Functional Gain - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:106992759 chr6:106992758 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_15626 0 0 0 0 1 CRYBG1 chr6:106992663 3'AG 106992663 Downstream 96bp 14969 chr1 203468789 203468789 1 + G T COAD 203468790 + 203468770 203468810 41 CTCTCAGCAAAGTTGAAGAGGATTGACCTCTCCAACAACCT CTCTCAGCAAAGTTGAAGATGATTGACCTCTCCAACAACCT < 41bp 0.55297308699991 0.838589158548694 NA NA prediction 0.571232143097567 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203468790 chr1:203468789 nonsynonymous SNV 0.750 4 20 hm7G_associated_SNPs_15627 0 0 0 0 1 OPTC chr1:203468777 3'AG 203468777 Downstream 13bp 14970 chr7 117828412 117828412 1 + G T LUAD 117828413 + 117828393 117828433 41 TATTCAGCTCTTCACAGGGGGTAGAACAAGTGGTACTAGGA TATTCAGCTCTTCACAGGGTGTAGAACAAGTGGTACTAGGA < 41bp 0.497757153513929 0.785605124341823 NA NA prediction 0.571210248683645 Functional Gain - LSM8 ENSG00000128534 CDS Human protein_coding chr7:117828413 chr7:117828412 synonymous SNV . 0 20 hm7G_associated_SNPs_15628 0 0 1 0 2 LSM8 chr7:117828332 3'AG 117828332 Downstream 81bp 14971 chr7 117828412 117828412 1 + G T LUAD 117828413 + 117828393 117828433 41 TATTCAGCTCTTCACAGGGGGTAGAACAAGTGGTACTAGGA TATTCAGCTCTTCACAGGGTGTAGAACAAGTGGTACTAGGA < 41bp 0.497757153513929 0.785605124341823 NA NA prediction 0.571210248683645 Functional Gain - LSM8 ENSG00000128534 CDS Human protein_coding chr7:117828413 chr7:117828412 synonymous SNV . 0 20 hm7G_associated_SNPs_15628 0 0 1 0 2 LSM8 chr7:117828459 5'GT 117828459 Upstream 48bp 14972 chr19 34895643 34895643 1 + G T LUSC 34895644 + 34895624 34895664 41 TGCAGGTGTATTGCCCGCTGGAAGGCTCCCCGTTTCACCGT TGCAGGTGTATTGCCCGCTTGAAGGCTCCCCGTTTCACCGT < 41bp 0.545590141066018 0.831194178479912 NA NA prediction 0.571208074827787 Functional Gain - PDCD2L ENSG00000126249;ENSG00000266953 CDS Human other chr19:34895644 chr19:34895643 synonymous SNV . 0 20 hm7G_associated_SNPs_15629 0 0 1 0 2 PDCD2L chr19:34895554 3'AG 34895554 Downstream 90bp 14973 chr19 34895643 34895643 1 + G T LUSC 34895644 + 34895624 34895664 41 TGCAGGTGTATTGCCCGCTGGAAGGCTCCCCGTTTCACCGT TGCAGGTGTATTGCCCGCTTGAAGGCTCCCCGTTTCACCGT < 41bp 0.545590141066018 0.831194178479912 NA NA prediction 0.571208074827787 Functional Gain - PDCD2L ENSG00000126249;ENSG00000266953 CDS Human other chr19:34895644 chr19:34895643 synonymous SNV . 0 20 hm7G_associated_SNPs_15629 0 0 1 0 2 PDCD2L chr19:34895720 5'GT 34895720 Upstream 78bp 14974 chr14 103573874 103573874 1 + G T UCEC 103573875 + 103573855 103573895 41 AGCGTGTGGCCCGGCCGCGGGCACAGGTACCACAAGGGGGA AGCGTGTGGCCCGGCCGCGTGCACAGGTACCACAAGGGGGA < 41bp 0.530168211971935 0.815739744861653 NA NA prediction 0.571143065779436 Functional Gain - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103573875 chr14:103573874 synonymous SNV . 0 20 hm7G_associated_SNPs_15631 0 0 1 0 1 EXOC3L4 chr14:103573880 5'GT 103573880 Upstream 7bp 14975 chr9 133578463 133578463 1 + G T OV 133578464 + 133578444 133578484 41 TCTCTCTTGCTGATCGAGAGGTGATATCCCGGCTTCGGAAC TCTCTCTTGCTGATCGAGATGTGATATCCCGGCTTCGGAAC < 41bp 0.549579246088026 0.835149110669098 NA NA prediction 0.571139729162143 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133578464 chr9:133578463 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_15632 0 0 1 1 1 EXOSC2 chr9:133578440 3'AG 133578440 Downstream 24bp 14976 chr19 15754728 15754728 1 + G T UCEC 15754729 + 15754709 15754749 41 GCTTGCAGGTCACCCCCACGGAGCAGGGCATGAGGGTCCTG GCTTGCAGGTCACCCCCACTGAGCAGGGCATGAGGGTCCTG < 41bp 0.488370460611525 0.785562893571736 NA NA prediction 0.571125787143473 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15754729 chr19:15754728 synonymous SNV . 0 20 hm7G_associated_SNPs_15633 0 0 0 0 1 CYP4F3 chr19:15754717 3'AG 15754717 Downstream 12bp 14977 chr13 25285467 25285467 1 + G T READ 25285468 + 25285448 25285488 41 GCTTCCAGGGCTCAGTACTGGTTTGTGGCTGTGCCGCACGC GCTTCCAGGGCTCAGTACTTGTTTGTGGCTGTGCCGCACGC < 41bp 0.535300118322211 0.820819837971375 NA NA prediction 0.571039439298328 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25285468 chr13:25285467 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15635 0 0 0 0 2 ATP12A chr13:25285456 3'AG 25285456 Downstream 12bp 14978 chr13 25285467 25285467 1 + G T READ 25285468 + 25285448 25285488 41 GCTTCCAGGGCTCAGTACTGGTTTGTGGCTGTGCCGCACGC GCTTCCAGGGCTCAGTACTTGTTTGTGGCTGTGCCGCACGC < 41bp 0.535300118322211 0.820819837971375 NA NA prediction 0.571039439298328 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25285468 chr13:25285467 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15635 0 0 0 0 2 ATP12A chr13:25285547 5'GT 25285547 Upstream 81bp 14979 chr11 66039310 66039310 1 + G T LUAD 66039311 + 66039291 66039331 41 TGATTGGCGACTCAGGCGTGGGCAAGTCATGCCTGCTCCTG TGATTGGCGACTCAGGCGTTGGCAAGTCATGCCTGCTCCTG < 41bp 0.558136495549937 0.843655112356893 NA NA prediction 0.571037233613912 Functional Gain - RAB1B ENSG00000174903 CDS Human protein_coding chr11:66039311 chr11:66039310 synonymous SNV . 0 20 hm7G_associated_SNPs_15636 0 0 1 0 2 RAB1B chr11:66039268 3'AG 66039268 Downstream 43bp 14980 chr11 66039310 66039310 1 + G T LUAD 66039311 + 66039291 66039331 41 TGATTGGCGACTCAGGCGTGGGCAAGTCATGCCTGCTCCTG TGATTGGCGACTCAGGCGTTGGCAAGTCATGCCTGCTCCTG < 41bp 0.558136495549937 0.843655112356893 NA NA prediction 0.571037233613912 Functional Gain - RAB1B ENSG00000174903 CDS Human protein_coding chr11:66039311 chr11:66039310 synonymous SNV . 0 20 hm7G_associated_SNPs_15636 0 0 1 0 2 RAB1B chr11:66039340 5'GT 66039340 Upstream 31bp 14981 chr6 142723805 142723805 1 + G T LUSC 142723806 + 142723786 142723826 41 TTAAATTTAACTGCTGATGGGCAGAACTTAACCTCAGCCAA TTAAATTTAACTGCTGATGTGCAGAACTTAACCTCAGCCAA < 41bp 0.484245648736979 0.785516567589581 NA NA prediction 0.571033135179163 Functional Gain - ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142723806 chr6:142723805 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_15637 0 0 1 0 1 ADGRG6 chr6:142723757 3'AG 142723757 Downstream 49bp 14982 chr4 156835507 156835507 1 + G T UCEC 156835508 + 156835488 156835528 41 CTGAAGAAAAAGAGGAACAGGTGGCTGAATTTCAGAAGCAA CTGAAGAAAAAGAGGAACATGTGGCTGAATTTCAGAAGCAA < 41bp 0.522067890323073 0.807567185536241 NA NA prediction 0.570998590426336 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156835508 chr4:156835507 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_15639 0 0 0 0 1 TDO2 chr4:156835475 3'AG 156835475 Downstream 33bp 14983 chr10 23482633 23482633 1 + G T PRAD 23482634 + 23482614 23482654 41 TCTCTTCTCACCTGTCCAGGGTCCCCCTCCCCCAGCGACCC TCTCTTCTCACCTGTCCAGTGTCCCCCTCCCCCAGCGACCC < 41bp 0.52403576099883 0.809534951634602 NA NA prediction 0.570998381271543 Functional Gain - PTF1A ENSG00000168267 CDS Human protein_coding chr10:23482634 chr10:23482633 nonsynonymous SNV 0.572 5 20 hm7G_associated_SNPs_15640 0 0 0 0 1 PTF1A chr10:23482633 5'GT 23482633 Upstream 1bp 14984 chrX 115574877 115574877 1 + G T SARC 115574878 + 115574858 115574898 41 ATCCAAATGAATAAAAGCTGGGTAGACATCAACAATTTTAC ATCCAAATGAATAAAAGCTTGGTAGACATCAACAATTTTAC < 41bp 0.476203920515731 0.785494916082332 NA NA prediction 0.570989832164663 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115574878 chrX:115574877 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_15641 0 0 0 0 2 SLC6A14 chrX:115574811 3'AG 115574811 Downstream 67bp 14985 chrX 115574877 115574877 1 + G T SARC 115574878 + 115574858 115574898 41 ATCCAAATGAATAAAAGCTGGGTAGACATCAACAATTTTAC ATCCAAATGAATAAAAGCTTGGTAGACATCAACAATTTTAC < 41bp 0.476203920515731 0.785494916082332 NA NA prediction 0.570989832164663 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115574878 chrX:115574877 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_15641 0 0 0 0 2 SLC6A14 chrX:115574958 5'GT 115574958 Upstream 82bp 14986 chr10 115481474 115481474 1 + G T THCA 115481475 + 115481455 115481495 41 TCAAGTGCTTCCGAAGCCTGGGTTTTGACGTGATTGTCTAT TCAAGTGCTTCCGAAGCCTTGGTTTTGACGTGATTGTCTAT < 41bp 0.570123029927402 0.85560693785328 NA NA prediction 0.570967815851754 Functional Gain - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115481475 chr10:115481474 synonymous SNV . 0 20 hm7G_associated_SNPs_15642 0 0 1 0 2 CASP7 chr10:115481410 3'AG 115481410 Downstream 65bp 14987 chr10 115481474 115481474 1 + G T THCA 115481475 + 115481455 115481495 41 TCAAGTGCTTCCGAAGCCTGGGTTTTGACGTGATTGTCTAT TCAAGTGCTTCCGAAGCCTTGGTTTTGACGTGATTGTCTAT < 41bp 0.570123029927402 0.85560693785328 NA NA prediction 0.570967815851754 Functional Gain - CASP7 ENSG00000165806 CDS Human protein_coding chr10:115481475 chr10:115481474 synonymous SNV . 0 20 hm7G_associated_SNPs_15642 0 0 1 0 2 CASP7 chr10:115481538 5'GT 115481538 Upstream 65bp 14988 chr19 4318467 4318467 1 + G T THYM 4318468 + 4318448 4318488 41 CTCGCGAGAAAGATGGCAAGGGGCGGACGGCGTCTCCCATC CTCGCGAGAAAGATGGCAATGGGCGGACGGCGTCTCCCATC < 41bp 0.573231349744933 0.858704163944027 NA NA prediction 0.570945628398187 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4318468 chr19:4318467 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_15644 0 0 0 0 1 FSD1 chr19:4318502 5'GT 4318502 Upstream 36bp 14989 chr19 2399124 2399124 1 + G T LUAD 2399125 + 2399105 2399145 41 TATTGCAGCGAGGGATCCGGGCAAGGCTGCGGGAGCACGGC TATTGCAGCGAGGGATCCGTGCAAGGCTGCGGGAGCACGGC < 41bp 0.571311951137697 0.856782989136689 NA NA prediction 0.570942075997985 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2399125 chr19:2399124 synonymous SNV . 0 20 hm7G_associated_SNPs_15647 0 0 1 0 2 TMPRSS9 chr19:2399050 3'AG 2399050 Downstream 75bp 14990 chr19 2399124 2399124 1 + G T LUAD 2399125 + 2399105 2399145 41 TATTGCAGCGAGGGATCCGGGCAAGGCTGCGGGAGCACGGC TATTGCAGCGAGGGATCCGTGCAAGGCTGCGGGAGCACGGC < 41bp 0.571311951137697 0.856782989136689 NA NA prediction 0.570942075997985 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2399125 chr19:2399124 synonymous SNV . 0 20 hm7G_associated_SNPs_15647 0 0 1 0 2 TMPRSS9 chr19:2399191 5'GT 2399191 Upstream 68bp 14991 chr3 138121072 138121072 1 + G T LUAD 138121073 + 138121053 138121093 41 CCAAATGGCGGGGAGACCGGGCCACAGGCACCCACAAACTG CCAAATGGCGGGGAGACCGTGCCACAGGCACCCACAAACTG < 41bp 0.527859730682303 0.813315866451854 NA NA prediction 0.570912271539102 Functional Gain - MRAS ENSG00000158186 CDS Human protein_coding chr3:138121073 chr3:138121072 synonymous SNV . 0 20 hm7G_associated_SNPs_15650 0 0 0 0 1 MRAS chr3:138121012 3'AG 138121012 Downstream 61bp 14992 chr4 103531809 103531809 1 + G T UCEC 103531810 + 103531790 103531830 41 AAATGCAGGAGAGGATGAAGGAGTTGTGCCTGGAACCACGC AAATGCAGGAGAGGATGAATGAGTTGTGCCTGGAACCACGC < 41bp 0.562805627555088 0.848257948218209 NA NA prediction 0.570904641326242 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103531810 chr4:103531809 stopgain 0.991 1 20 hm7G_associated_SNPs_15651 0 0 1 0 2 NFKB1 chr4:103531732 3'AG 103531732 Downstream 78bp 14993 chr4 103531809 103531809 1 + G T UCEC 103531810 + 103531790 103531830 41 AAATGCAGGAGAGGATGAAGGAGTTGTGCCTGGAACCACGC AAATGCAGGAGAGGATGAATGAGTTGTGCCTGGAACCACGC < 41bp 0.562805627555088 0.848257948218209 NA NA prediction 0.570904641326242 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103531810 chr4:103531809 stopgain 0.991 1 20 hm7G_associated_SNPs_15651 0 0 1 0 2 NFKB1 chr4:103531856 5'GT 103531856 Upstream 48bp 14994 chr10 71690247 71690247 1 + G T LUSC 71690248 + 71690228 71690268 41 GGAGTGAAGGGAGAAAACGGGCACCCAGGGAGCCCAGGAGA GGAGTGAAGGGAGAAAACGTGCACCCAGGGAGCCCAGGAGA < 41bp 0.550380756608881 0.835796214740735 NA NA prediction 0.570830916263709 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71690248 chr10:71690247 nonsynonymous SNV 0.213 5 20 hm7G_associated_SNPs_15655 0 0 0 0 2 COL13A1 chr10:71690156 3'AG 71690156 Downstream 92bp 14995 chr10 71690247 71690247 1 + G T LUSC 71690248 + 71690228 71690268 41 GGAGTGAAGGGAGAAAACGGGCACCCAGGGAGCCCAGGAGA GGAGTGAAGGGAGAAAACGTGCACCCAGGGAGCCCAGGAGA < 41bp 0.550380756608881 0.835796214740735 NA NA prediction 0.570830916263709 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71690248 chr10:71690247 nonsynonymous SNV 0.213 5 20 hm7G_associated_SNPs_15655 0 0 0 0 2 COL13A1 chr10:71690308 5'GT 71690308 Upstream 62bp 14996 chr17 36868121 36868121 1 + G T LUAD 36868122 + 36868102 36868142 41 GACATCCCGGCACAGCAGCGGGGGAGGCGGAGGAGGCGCTG GACATCCCGGCACAGCAGCTGGGGAGGCGGAGGAGGCGCTG < 41bp 0.452082615608559 0.785399600175686 NA NA prediction 0.570799200351373 Functional Gain - MLLT6 ENSG00000108292 CDS Human other chr17:36868122 chr17:36868121 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_15657 0 0 1 0 1 MLLT6 chr17:36868100 3'AG 36868100 Downstream 22bp 14997 chr5 169015423 169015423 1 + G T LUAD 169015424 + 169015404 169015444 41 AAAAAAAAGAAAAGAACATGGAGGCAGATATAATCACAAAT AAAAAAAAGAAAAGAACATTGAGGCAGATATAATCACAAAT < 41bp 0.528378452668119 0.81377370514503 NA NA prediction 0.570790504953823 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015424 chr5:169015423 nonsynonymous SNV 0.127 2 20 hm7G_associated_SNPs_15659 0 0 1 0 2 SPDL1 chr5:169015398 3'AG 169015398 Downstream 26bp 14998 chr5 169015423 169015423 1 + G T LUAD 169015424 + 169015404 169015444 41 AAAAAAAAGAAAAGAACATGGAGGCAGATATAATCACAAAT AAAAAAAAGAAAAGAACATTGAGGCAGATATAATCACAAAT < 41bp 0.528378452668119 0.81377370514503 NA NA prediction 0.570790504953823 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169015424 chr5:169015423 nonsynonymous SNV 0.127 2 20 hm7G_associated_SNPs_15659 0 0 1 0 2 SPDL1 chr5:169015494 5'GT 169015494 Upstream 72bp 14999 chr2 32396412 32396412 1 + G T UCEC 32396413 + 32396393 32396433 41 TTTTTGGCAAGTTGTTACGGGAATTTAGACTTGTAGCAGCT TTTTTGGCAAGTTGTTACGTGAATTTAGACTTGTAGCAGCT < 41bp 0.482092451818789 0.785390152342953 NA NA prediction 0.570780304685905 Functional Gain - SLC30A6 ENSG00000152683 CDS Human protein_coding chr2:32396413 chr2:32396412 synonymous SNV . 0 20 hm7G_associated_SNPs_15660 0 0 1 0 1 SLC30A6 chr2:32396356 3'AG 32396356 Downstream 57bp 15000 chr17 75209484 75209484 1 + G T LUSC 75209485 + 75209465 75209505 41 GCCGCCAGCAGCCTTCCCCGGGTGGACGACGTGCTTGCGTC GCCGCCAGCAGCCTTCCCCTGGTGGACGACGTGCTTGCGTC < 41bp 0.458789335410926 0.785382378711289 NA NA prediction 0.570764757422578 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75209485 chr17:75209484 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_15661 0 0 0 0 1 SEC14L1 chr17:75209574 5'GT 75209574 Upstream 91bp 15001 chr1 193117052 193117052 1 + G T LUAD 193117053 + 193117033 193117073 41 GTAAAAGCCAGAGAAGAAGGGCGTGCACCTGAACAGCGACC GTAAAAGCCAGAGAAGAAGTGCGTGCACCTGAACAGCGACC < 41bp 0.543780724956803 0.829161234259748 NA NA prediction 0.570761018605889 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193117053 chr1:193117052 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_15662 0 0 1 0 2 CDC73 chr1:193116997 3'AG 193116997 Downstream 56bp 15002 chr1 193117052 193117052 1 + G T LUAD 193117053 + 193117033 193117073 41 GTAAAAGCCAGAGAAGAAGGGCGTGCACCTGAACAGCGACC GTAAAAGCCAGAGAAGAAGTGCGTGCACCTGAACAGCGACC < 41bp 0.543780724956803 0.829161234259748 NA NA prediction 0.570761018605889 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193117053 chr1:193117052 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_15662 0 0 1 0 2 CDC73 chr1:193117095 5'GT 193117095 Upstream 44bp 15003 chr2 228783549 228783549 1 + G T UCEC 228783550 + 228783530 228783570 41 ATGCATTGCCAAACTGGAAGGTCATGAAGGTGAAATTTCAA ATGCATTGCCAAACTGGAATGTCATGAAGGTGAAATTTCAA < 41bp 0.480895883924772 0.78537020052635 NA NA prediction 0.5707404010527 Functional Gain - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228783550 chr2:228783549 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_15664 0 0 0 1 2 DAW1 chr2:228783496 3'AG 228783496 Downstream 54bp 15004 chr2 228783549 228783549 1 + G T UCEC 228783550 + 228783530 228783570 41 ATGCATTGCCAAACTGGAAGGTCATGAAGGTGAAATTTCAA ATGCATTGCCAAACTGGAATGTCATGAAGGTGAAATTTCAA < 41bp 0.480895883924772 0.78537020052635 NA NA prediction 0.5707404010527 Functional Gain - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228783550 chr2:228783549 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_15664 0 0 0 1 2 DAW1 chr2:228783572 5'GT 228783572 Upstream 24bp 15005 chr21 48078707 48078707 1 + G T HNSC 48078708 + 48078688 48078728 41 CCCGGGATGCCTGGCTGAAGGAGGACGGGGTCATTTGGCCC CCCGGGATGCCTGGCTGAATGAGGACGGGGTCATTTGGCCC < 41bp 0.532559742961482 0.817891741813459 NA NA prediction 0.570663997703953 Functional Gain - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48078708 chr21:48078707 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15666 0 0 1 0 1 PRMT2 chr21:48078657 3'AG 48078657 Downstream 51bp 15006 chr14 78374209 78374209 1 + G T LUAD 78374210 + 78374190 78374230 41 GATGGAGTTTGTGGATGGCGGGCAGGTCAATGACAGAGACT GATGGAGTTTGTGGATGGCTGGCAGGTCAATGACAGAGACT < 41bp 0.543073629509822 0.82839540585902 NA NA prediction 0.570643552698396 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78374210 chr14:78374209 nonsynonymous SNV 0.788 4 20 hm7G_associated_SNPs_15667 0 0 0 0 2 ADCK1 chr14:78374146 3'AG 78374146 Downstream 64bp 15007 chr14 78374209 78374209 1 + G T LUAD 78374210 + 78374190 78374230 41 GATGGAGTTTGTGGATGGCGGGCAGGTCAATGACAGAGACT GATGGAGTTTGTGGATGGCTGGCAGGTCAATGACAGAGACT < 41bp 0.543073629509822 0.82839540585902 NA NA prediction 0.570643552698396 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78374210 chr14:78374209 nonsynonymous SNV 0.788 4 20 hm7G_associated_SNPs_15667 0 0 0 0 2 ADCK1 chr14:78374262 5'GT 78374262 Upstream 54bp 15008 chr5 129037267 129037267 1 + G T LUAD 129037268 + 129037248 129037288 41 ACTGCATGACCGTGTGGGAGGCGGGAGTGTGGTCTGAGGTG ACTGCATGACCGTGTGGGATGCGGGAGTGTGGTCTGAGGTG < 41bp 0.549893436604451 0.8351974708313 NA NA prediction 0.570608068453699 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:129037268 chr5:129037267 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15670 0 0 0 0 1 ADAMTS19 chr5:129037285 5'GT 129037285 Upstream 19bp 15009 chr15 23444035 23444035 1 + G T LUAD 23444036 + 23444016 23444056 41 GAGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCC GAGAACATCTGGACAGTGATGGGGAGGAGGCACCTCGGCCC < 41bp 0.504566838280487 0.789870221681478 NA NA prediction 0.570606766801983 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444036 chr15:23444035 . . 0 20 hm7G_associated_SNPs_15671 0 0 0 0 2 GOLGA8EP chr15:23444007 3'AG 23444007 Downstream 29bp 15010 chr15 23444035 23444035 1 + G T LUAD 23444036 + 23444016 23444056 41 GAGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCC GAGAACATCTGGACAGTGATGGGGAGGAGGCACCTCGGCCC < 41bp 0.504566838280487 0.789870221681478 NA NA prediction 0.570606766801983 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444036 chr15:23444035 . . 0 20 hm7G_associated_SNPs_15671 0 0 0 0 2 GOLGA8EP chr15:23444098 5'GT 23444098 Upstream 64bp 15011 chr19 12783926 12783926 1 + G T BRCA 12783927 + 12783907 12783947 41 AGACACAGGGGAGCTGCTGGGCGAGTGAGTCCTTGTGGTCG AGACACAGGGGAGCTGCTGTGCGAGTGAGTCCTTGTGGTCG < 41bp 0.557915358139302 0.843207314808746 NA NA prediction 0.570583913338888 Functional Gain - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12783927 chr19:12783926 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_15674 0 0 0 1 1 WDR83 chr19:12783930 5'GT 12783930 Upstream 5bp 15012 chr9 131246279 131246279 1 + G T LUAD 131246280 + 131246260 131246300 41 CCATGCGTGGGCATTTGCAGGCACAGCTTCGGTCCAAAGAG CCATGCGTGGGCATTTGCATGCACAGCTTCGGTCCAAAGAG < 41bp 0.471262078524765 0.785264944313745 NA NA prediction 0.570529888627489 Functional Gain - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131246280 chr9:131246279 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15676 0 0 1 0 1 ODF2 chr9:131246217 3'AG 131246217 Downstream 63bp 15013 chrX 595519 595519 1 + G T LUAD 595520 + 595500 595540 41 CCGACGCCTTCATGCGCGAGGAGCTCAGCCAGCGCCTGGGG CCGACGCCTTCATGCGCGATGAGCTCAGCCAGCGCCTGGGG < 41bp 0.451042135573076 0.785249168858186 NA NA prediction 0.570498337716371 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:595520 chrX:595519 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_15678 0 0 0 0 1 SHOX chrX:595561 5'GT 595561 Upstream 43bp 15014 chr20 61950488 61950488 1 + G T COAD 61950489 + 61950469 61950509 41 TTCCCGAGACACCCCGTGAGGCCTTCGCGCTGTGGCAGATG TTCCCGAGACACCCCGTGATGCCTTCGCGCTGTGGCAGATG < 41bp 0.445381916437867 0.785247169042113 NA NA prediction 0.570494338084225 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61950489 chr20:61950488 nonsynonymous SNV 0.023 3 20 hm7G_associated_SNPs_15679 0 0 0 0 2 COL20A1 chr20:61950410 3'AG 61950410 Downstream 79bp 15015 chr20 61950488 61950488 1 + G T COAD 61950489 + 61950469 61950509 41 TTCCCGAGACACCCCGTGAGGCCTTCGCGCTGTGGCAGATG TTCCCGAGACACCCCGTGATGCCTTCGCGCTGTGGCAGATG < 41bp 0.445381916437867 0.785247169042113 NA NA prediction 0.570494338084225 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61950489 chr20:61950488 nonsynonymous SNV 0.023 3 20 hm7G_associated_SNPs_15679 0 0 0 0 2 COL20A1 chr20:61950552 5'GT 61950552 Upstream 65bp 15016 chr9 32418431 32418431 1 + G T OV 32418432 + 32418412 32418452 41 AGTGGTATTTGATCAGGATGGATATTATTACCCAGACAGCC AGTGGTATTTGATCAGGATTGATATTATTACCCAGACAGCC < 41bp 0.462843572381287 0.785240598810764 NA NA prediction 0.570481197621527 Functional Gain - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32418432 chr9:32418431 stopgain 0.998 1 20 hm7G_associated_SNPs_15680 0 0 0 1 1 ACO1 chr9:32418509 5'GT 32418509 Upstream 79bp 15017 chr4 144387313 144387313 1 + G T CESC 144387314 + 144387294 144387334 41 CCCTATGATCAAGCCCAAAGGAGACAAACAGGTGGAATACT CCCTATGATCAAGCCCAAATGAGACAAACAGGTGGAATACT < 41bp 0.531853899359793 0.817080856422465 NA NA prediction 0.570453914125344 Functional Gain - GAB1 ENSG00000109458 CDS Human protein_coding chr4:144387314 chr4:144387313 stopgain 1.000 1 20 hm7G_associated_SNPs_15681 0 0 0 0 2 GAB1 chr4:144387256 3'AG 144387256 Downstream 58bp 15018 chr4 144387313 144387313 1 + G T CESC 144387314 + 144387294 144387334 41 CCCTATGATCAAGCCCAAAGGAGACAAACAGGTGGAATACT CCCTATGATCAAGCCCAAATGAGACAAACAGGTGGAATACT < 41bp 0.531853899359793 0.817080856422465 NA NA prediction 0.570453914125344 Functional Gain - GAB1 ENSG00000109458 CDS Human protein_coding chr4:144387314 chr4:144387313 stopgain 1.000 1 20 hm7G_associated_SNPs_15681 0 0 0 0 2 GAB1 chr4:144387378 5'GT 144387378 Upstream 66bp 15019 chr1 236908035 236908035 1 + G T LUSC 236908036 + 236908016 236908056 41 GCGACCTGGCAGCGCACCAGGACCGCGTGGAGCAGATCGCA GCGACCTGGCAGCGCACCATGACCGCGTGGAGCAGATCGCA < 41bp 0.574511761395387 0.859730972261925 NA NA prediction 0.570438421733076 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236908036 chr1:236908035 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15683 0 0 0 0 1 ACTN2 chr1:236908076 5'GT 236908076 Upstream 42bp 15020 chr3 122283388 122283388 1 + G T KIRP 122283389 + 122283369 122283409 41 CTCTAAGTCCTCGGGCGGCGGGGAGTGCACGGTCAGCACCC CTCTAAGTCCTCGGGCGGCTGGGAGTGCACGGTCAGCACCC < 41bp 0.538489171740464 0.823707280923883 NA NA prediction 0.570436218366838 Functional Gain - DTX3L ENSG00000163840 CDS Human protein_coding chr3:122283389 chr3:122283388 nonsynonymous SNV 0.136 4 20 hm7G_associated_SNPs_15684 0 0 1 0 1 DTX3L chr3:122283460 5'GT 122283460 Upstream 73bp 15021 chr11 67077245 67077245 1 + G T STAD 67077246 + 67077226 67077266 41 CCTGCTTCCACAGAGCACAGGGCACCCACGTGCTGGTCCAC CCTGCTTCCACAGAGCACATGGCACCCACGTGCTGGTCCAC < 41bp 0.447841969579451 0.785214153843531 NA NA prediction 0.570428307687063 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67077246 chr11:67077245 nonsynonymous SNV 0.937 3 20 hm7G_associated_SNPs_15685 0 0 0 0 1 SSH3 chr11:67077239 3'AG 67077239 Downstream 7bp 15022 chr18 22040786 22040786 1 + G T LUAD 22040787 + 22040767 22040807 41 AGCTTTTGCTATAATGCTAGGAAATGCTTTGGTCATTTTAG AGCTTTTGCTATAATGCTATGAAATGCTTTGGTCATTTTAG < 41bp 0.505510854202814 0.790713561342164 NA NA prediction 0.570405414278699 Functional Gain - HRH4 ENSG00000134489 CDS Human protein_coding chr18:22040787 chr18:22040786 stopgain 0.999 1 20 hm7G_associated_SNPs_15688 0 0 0 0 1 HRH4 chr18:22040885 5'GT 22040885 Upstream 100bp 15023 chr1 155145712 155145712 1 - C A rs144579240 155145711 - 155145691 155145731 41 AGGCGCCGGTTGGACTCACGGGCGGGGCATGATGGGTAACA AGGCGCCGGTTGGACTCACTGGCGGGGCATGATGGGTAACA < 41bp 0.524443120579223 0.809644141533334 NA NA prediction 0.570402041908223 Functional Gain - KRTCAP2 ENSG00000163463 CDS Human protein_coding chr1:155145711 chr1:155145712 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_15689 0 0 1 0 1 KRTCAP2 chr1:155145697 5'GT 155145697 Upstream 16bp 15024 chr16 1392054 1392054 1 + G T LUAD 1392055 + 1392035 1392075 41 TGAAGTCATCGGCCTGAAGGGCATGGGCAGGTATGACTGCT TGAAGTCATCGGCCTGAAGTGCATGGGCAGGTATGACTGCT < 41bp 0.56777937726799 0.852980250449323 NA NA prediction 0.570401746362665 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392055 chr16:1392054 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_15690 0 0 0 0 2 BAIAP3 chr16:1391987 3'AG 1391987 Downstream 68bp 15025 chr16 1392054 1392054 1 + G T LUAD 1392055 + 1392035 1392075 41 TGAAGTCATCGGCCTGAAGGGCATGGGCAGGTATGACTGCT TGAAGTCATCGGCCTGAAGTGCATGGGCAGGTATGACTGCT < 41bp 0.56777937726799 0.852980250449323 NA NA prediction 0.570401746362665 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392055 chr16:1392054 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_15690 0 0 0 0 2 BAIAP3 chr16:1392064 5'GT 1392064 Upstream 11bp 15026 chr2 9463303 9463303 1 + G T READ 9463304 + 9463284 9463324 41 AAGCTCCATGGGATGATTCGGACTGAAATAAGCGGAGCGGA AAGCTCCATGGGATGATTCTGACTGAAATAAGCGGAGCGGA < 41bp 0.544876840162327 0.830074473990414 NA NA prediction 0.570395267656174 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9463304 chr2:9463303 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_15691 0 0 1 0 2 ASAP2 chr2:9463250 3'AG 9463250 Downstream 54bp 15027 chr2 9463303 9463303 1 + G T READ 9463304 + 9463284 9463324 41 AAGCTCCATGGGATGATTCGGACTGAAATAAGCGGAGCGGA AAGCTCCATGGGATGATTCTGACTGAAATAAGCGGAGCGGA < 41bp 0.544876840162327 0.830074473990414 NA NA prediction 0.570395267656174 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9463304 chr2:9463303 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_15691 0 0 1 0 2 ASAP2 chr2:9463379 5'GT 9463379 Upstream 77bp 15028 chr13 95271741 95271741 1 + G T UCEC 95271742 + 95271722 95271762 41 TTACTCCAAAGATGGAATAGGGGTACCATTTATGGGAAGTT TTACTCCAAAGATGGAATATGGGTACCATTTATGGGAAGTT < 41bp 0.521784193071862 0.806974648337975 NA NA prediction 0.570380910532226 Functional Gain - GPR180 ENSG00000152749 CDS Human protein_coding chr13:95271742 chr13:95271741 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_15692 0 0 0 0 2 GPR180 chr13:95271722 3'AG 95271722 Downstream 20bp 15029 chr13 95271741 95271741 1 + G T UCEC 95271742 + 95271722 95271762 41 TTACTCCAAAGATGGAATAGGGGTACCATTTATGGGAAGTT TTACTCCAAAGATGGAATATGGGTACCATTTATGGGAAGTT < 41bp 0.521784193071862 0.806974648337975 NA NA prediction 0.570380910532226 Functional Gain - GPR180 ENSG00000152749 CDS Human protein_coding chr13:95271742 chr13:95271741 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_15692 0 0 0 0 2 GPR180 chr13:95271771 5'GT 95271771 Upstream 31bp 15030 chr2 207636004 207636004 1 + G T LUSC 207636005 + 207635985 207636025 41 GCACCGATTGCTCTTAAGAGGAAACTGGAGGTAAACACATG GCACCGATTGCTCTTAAGATGAAACTGGAGGTAAACACATG < 41bp 0.481880342736966 0.785180892126783 NA NA prediction 0.570361784253567 Functional Gain - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207636005 chr2:207636004 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_15693 0 0 1 0 2 FASTKD2 chr2:207635906 3'AG 207635906 Downstream 99bp 15031 chr2 207636004 207636004 1 + G T LUSC 207636005 + 207635985 207636025 41 GCACCGATTGCTCTTAAGAGGAAACTGGAGGTAAACACATG GCACCGATTGCTCTTAAGATGAAACTGGAGGTAAACACATG < 41bp 0.481880342736966 0.785180892126783 NA NA prediction 0.570361784253567 Functional Gain - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207636005 chr2:207636004 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_15693 0 0 1 0 2 FASTKD2 chr2:207636014 5'GT 207636014 Upstream 11bp 15032 chr14 76633041 76633041 1 + G T LUAD 76633042 + 76633022 76633062 41 TGTAGCAGCAGTGACACTGGGCTCTTTACCAATGATGAAGG TGTAGCAGCAGTGACACTGTGCTCTTTACCAATGATGAAGG < 41bp 0.462751958144432 0.785171881781603 NA NA prediction 0.570343763563207 Functional Gain - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76633042 chr14:76633041 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_15695 0 0 1 4 2 GPATCH2L chr14:76633006 3'AG 76633006 Downstream 36bp 15033 chr14 76633041 76633041 1 + G T LUAD 76633042 + 76633022 76633062 41 TGTAGCAGCAGTGACACTGGGCTCTTTACCAATGATGAAGG TGTAGCAGCAGTGACACTGTGCTCTTTACCAATGATGAAGG < 41bp 0.462751958144432 0.785171881781603 NA NA prediction 0.570343763563207 Functional Gain - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76633042 chr14:76633041 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_15695 0 0 1 4 2 GPATCH2L chr14:76633070 5'GT 76633070 Upstream 30bp 15034 chrX 47101681 47101681 1 + G T LUSC 47101682 + 47101662 47101702 41 AGGTCTTCTTTATCCCCATGGATCCGCGCCGCAAGCCAGAG AGGTCTTCTTTATCCCCATTGATCCGCGCCGCAAGCCAGAG < 41bp 0.446865159995006 0.785127096202015 NA NA prediction 0.570254192404031 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101682 chrX:47101681 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15698 0 0 1 0 1 USP11 chrX:47101705 5'GT 47101705 Upstream 25bp 15035 chr13 96439314 96439314 1 + G T COAD 96439315 + 96439295 96439335 41 CGAAAATTAGCACTGCAGTGGCACCCAGATAACTTCCAGAA CGAAAATTAGCACTGCAGTTGCACCCAGATAACTTCCAGAA < 41bp 0.481187582289019 0.785115177027489 NA NA prediction 0.570230354054978 Functional Gain - DNAJC3 ENSG00000102580 CDS Human protein_coding chr13:96439315 chr13:96439314 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15700 0 0 1 0 2 DNAJC3 chr13:96439261 3'AG 96439261 Downstream 54bp 15036 chr13 96439314 96439314 1 + G T COAD 96439315 + 96439295 96439335 41 CGAAAATTAGCACTGCAGTGGCACCCAGATAACTTCCAGAA CGAAAATTAGCACTGCAGTTGCACCCAGATAACTTCCAGAA < 41bp 0.481187582289019 0.785115177027489 NA NA prediction 0.570230354054978 Functional Gain - DNAJC3 ENSG00000102580 CDS Human protein_coding chr13:96439315 chr13:96439314 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15700 0 0 1 0 2 DNAJC3 chr13:96439409 5'GT 96439409 Upstream 96bp 15037 chr4 155490450 155490450 1 + G T LUAD 155490451 + 155490431 155490471 41 AGATGGGAAGAATTACTGTGGCCTACCAGGTAACGAACAGG AGATGGGAAGAATTACTGTTGCCTACCAGGTAACGAACAGG < 41bp 0.542204751393113 0.827311524192618 NA NA prediction 0.570213545599009 Functional Gain - FGB ENSG00000171564 CDS Human protein_coding chr4:155490451 chr4:155490450 nonsynonymous SNV 0.878 4 20 hm7G_associated_SNPs_15702 0 0 1 0 1 FGB chr4:155490459 5'GT 155490459 Upstream 10bp 15038 chr3 192980946 192980946 1 + G T LIHC 192980947 + 192980927 192980967 41 AGTTTGTAATTGGACAGGAGGTGGCCTATAACTTACTTGTC AGTTTGTAATTGGACAGGATGTGGCCTATAACTTACTTGTC < 41bp 0.510420687411486 0.79552384833951 NA NA prediction 0.570206321856046 Functional Gain - HRASLS ENSG00000127252 CDS Human protein_coding chr3:192980947 chr3:192980946 nonsynonymous SNV 0.154 3 20 hm7G_associated_SNPs_15704 0 0 0 0 1 HRASLS chr3:192981024 5'GT 192981024 Upstream 79bp 15039 chr4 154523830 154523830 1 + G T UCEC 154523831 + 154523811 154523851 41 GTGTGCAGACGTGGTTCCAGGACCCAGCTGGGAGGAGTCAT GTGTGCAGACGTGGTTCCATGACCCAGCTGGGAGGAGTCAT < 41bp 0.558069263043552 0.843161644589033 NA NA prediction 0.570184763090962 Functional Gain - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154523831 chr4:154523830 stopgain 0.995 1 20 hm7G_associated_SNPs_15706 0 0 0 0 1 TMEM131L chr4:154523879 5'GT 154523879 Upstream 50bp 15040 chr9 17298191 17298191 1 + G T UCEC 17298192 + 17298172 17298212 41 TGCTTGCTTTGCACAGGAAGGAACTGCAGGAGCTGCAGAAT TGCTTGCTTTGCACAGGAATGAACTGCAGGAGCTGCAGAAT < 41bp 0.494649244514254 0.785087731059962 NA NA prediction 0.570175462119925 Functional Gain - CNTLN ENSG00000044459;ENSG00000044459 exonic;splicing Human protein_coding chr9:17298192 chr9:17298191 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_15707 0 0 1 0 1 CNTLN chr9:17298188 3'AG 17298188 Downstream 4bp 15041 chr18 59855179 59855179 1 + G T SKCM 59855180 + 59855160 59855200 41 GTGGAACCCCGCCGGGGATGGGGGCGCCAGGGGTCCCTGGA GTGGAACCCCGCCGGGGATTGGGGCGCCAGGGGTCCCTGGA < 41bp 0.470707654608633 0.785083208764479 NA NA prediction 0.570166417528958 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59855180 chr18:59855179 nonsynonymous SNV 0.311 0 20 hm7G_associated_SNPs_15708 0 0 1 0 1 KIAA1468 chr18:59855264 5'GT 59855264 Upstream 86bp 15042 chr11 63176199 63176199 1 + G T rs144151046 63176200 + 63176180 63176220 41 CTAATATAGCAGGAGCCCTGGCTCCCCTCATGATGATCCTA CTAATATAGCAGGAGCCCTTGCTCCCCTCATGATGATCCTA < 41bp 0.459562635522808 0.785080520003565 NA NA prediction 0.570161040007131 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63176200 chr11:63176199 synonymous SNV . 0 20 hm7G_associated_SNPs_15709 0 0 0 0 1 SLC22A9 chr11:63176148 3'AG 63176148 Downstream 52bp 15043 chrX 77284872 77284872 1 + G T LUAD 77284873 + 77284853 77284893 41 CTCCAACTGCTGTGATGGTGGGTACAGGAGTAGGTGCTCAA CTCCAACTGCTGTGATGGTTGGTACAGGAGTAGGTGCTCAA < 41bp 0.543681545301392 0.828755611980425 NA NA prediction 0.570148133358065 Functional Gain - ATP7A ENSG00000165240 CDS Human protein_coding chrX:77284873 chrX:77284872 synonymous SNV . 0 20 hm7G_associated_SNPs_15711 0 0 0 0 1 ATP7A chrX:77284941 5'GT 77284941 Upstream 70bp 15044 chr3 46939401 46939401 1 + G T STAD 46939402 + 46939382 46939422 41 CTGGCCGCTGGGGGCACCAGGTGAGGTGGTGGCTGTGCCCT CTGGCCGCTGGGGGCACCATGTGAGGTGGTGGCTGTGCCCT < 41bp 0.565702196966102 0.850759530590205 NA NA prediction 0.570114667248205 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939402 chr3:46939401 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15713 0 0 0 0 2 PTH1R chr3:46939345 3'AG 46939345 Downstream 57bp 15045 chr3 46939401 46939401 1 + G T STAD 46939402 + 46939382 46939422 41 CTGGCCGCTGGGGGCACCAGGTGAGGTGGTGGCTGTGCCCT CTGGCCGCTGGGGGCACCATGTGAGGTGGTGGCTGTGCCCT < 41bp 0.565702196966102 0.850759530590205 NA NA prediction 0.570114667248205 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939402 chr3:46939401 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15713 0 0 0 0 2 PTH1R chr3:46939455 5'GT 46939455 Upstream 55bp 15046 chr17 37790323 37790323 1 + G T UCEC 37790324 + 37790304 37790344 41 GCCAGGCTGAAGTCCTGAAGGTCATCAGGCAGTCTGGTAAG GCCAGGCTGAAGTCCTGAATGTCATCAGGCAGTCTGGTAAG < 41bp 0.468847423405372 0.785050243205692 NA NA prediction 0.570100486411385 Functional Gain - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37790324 chr17:37790323 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_15715 0 0 0 0 1 PPP1R1B chr17:37790339 5'GT 37790339 Upstream 17bp 15047 chr3 119451158 119451158 1 + G T UCEC 119451159 + 119451139 119451179 41 AGCAATCAGAAAACTTGTAGGAAAGAGAAAGAATATAGAAG AGCAATCAGAAAACTTGTATGAAAGAGAAAGAATATAGAAG < 41bp 0.498227376847171 0.785039757412154 NA NA prediction 0.570079514824308 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119451159 chr3:119451158 stopgain 0.954 0 20 hm7G_associated_SNPs_15716 0 0 0 0 1 MAATS1 chr3:119451141 3'AG 119451141 Downstream 18bp 15048 chr3 38519355 38519355 1 + G T LUAD 38519356 + 38519336 38519376 41 AATTCTGTGCCTCCAGGCAGGAGTGTGTGGCCACTGAGGAG AATTCTGTGCCTCCAGGCATGAGTGTGTGGCCACTGAGGAG < 41bp 0.50787854980719 0.792889493118846 NA NA prediction 0.570021886623312 Functional Gain - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38519356 chr3:38519355 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_15720 0 0 1 0 1 ACVR2B chr3:38519352 3'AG 38519352 Downstream 4bp 15049 chr5 32739117 32739117 1 + G T LUAD 32739118 + 32739098 32739138 41 AGTTCAGTTGAGAAACAAGGGCTCAATATGGAGGATTACGT AGTTCAGTTGAGAAACAAGTGCTCAATATGGAGGATTACGT < 41bp 0.540146302276889 0.825151240552204 NA NA prediction 0.570009876550631 Functional Gain - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32739118 chr5:32739117 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_15721 0 0 0 0 1 NPR3 chr5:32739136 5'GT 32739136 Upstream 20bp 15050 chr5 131930621 131930621 1 + G T CESC 131930622 + 131930602 131930642 41 ATAATGAACTAAAAAGAAAGGAAGAGCAGTTGTCCAGTTAC ATAATGAACTAAAAAGAAATGAAGAGCAGTTGTCCAGTTAC < 41bp 0.530022173331764 0.815024900784046 NA NA prediction 0.570005454904563 Functional Gain - RAD50 ENSG00000113522 CDS Human protein_coding chr5:131930622 chr5:131930621 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_15722 0 0 1 0 1 RAD50 chr5:131930561 3'AG 131930561 Downstream 61bp 15051 chr3 129185862 129185862 1 + G T READ 129185863 + 129185843 129185883 41 GTCAGGGTAGTGAGGCAGAGGAGGAAGAACCAGAGGAAGAG GTCAGGGTAGTGAGGCAGATGAGGAAGAACCAGAGGAAGAG < 41bp 0.531877578779105 0.816861447816457 NA NA prediction 0.569967738074704 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129185863 chr3:129185862 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15724 0 0 0 0 1 IFT122 chr3:129185909 5'GT 129185909 Upstream 48bp 15052 chr18 51892139 51892139 1 + G T TGCT 51892140 + 51892120 51892160 41 AGTCCTCAACAAACTTCAAGGGCAAAGAGTGCTAAAGGGGT AGTCCTCAACAAACTTCAATGGCAAAGAGTGCTAAAGGGGT < 41bp 0.479702876419201 0.784969326876599 NA NA prediction 0.569938653753199 Functional Gain - C18orf54 ENSG00000166845 CDS Human protein_coding chr18:51892140 chr18:51892139 nonsynonymous SNV 0.083 1 20 hm7G_associated_SNPs_15726 0 0 1 0 2 C18orf54 chr18:51892089 3'AG 51892089 Downstream 51bp 15053 chr18 51892139 51892139 1 + G T TGCT 51892140 + 51892120 51892160 41 AGTCCTCAACAAACTTCAAGGGCAAAGAGTGCTAAAGGGGT AGTCCTCAACAAACTTCAATGGCAAAGAGTGCTAAAGGGGT < 41bp 0.479702876419201 0.784969326876599 NA NA prediction 0.569938653753199 Functional Gain - C18orf54 ENSG00000166845 CDS Human protein_coding chr18:51892140 chr18:51892139 nonsynonymous SNV 0.083 1 20 hm7G_associated_SNPs_15726 0 0 1 0 2 C18orf54 chr18:51892191 5'GT 51892191 Upstream 53bp 15054 chr5 141309289 141309289 1 + G T UCEC 141309290 + 141309270 141309310 41 TGAGAGGAGCTCGTCCTCAGGACCCCTCTGAGGAAGGTATG TGAGAGGAGCTCGTCCTCATGACCCCTCTGAGGAAGGTATG < 41bp 0.459695090181432 0.784935518979347 NA NA prediction 0.569871037958694 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141309290 chr5:141309289 nonsynonymous SNV 0.046 0 20 hm7G_associated_SNPs_15730 0 0 1 0 1 KIAA0141 chr5:141309305 5'GT 141309305 Upstream 17bp 15055 chr1 179019441 179019441 1 + G T UCEC 179019442 + 179019422 179019462 41 GAGACCATGTGGTGGAAGGGGAACCGTATGCTGGTTATGAT GAGACCATGTGGTGGAAGGTGAACCGTATGCTGGTTATGAT < 41bp 0.546579032671721 0.831488644714029 NA NA prediction 0.569819224084615 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179019442 chr1:179019441 synonymous SNV . 0 20 hm7G_associated_SNPs_15733 0 0 1 0 2 FAM20B chr1:179019414 3'AG 179019414 Downstream 28bp 15056 chr1 179019441 179019441 1 + G T UCEC 179019442 + 179019422 179019462 41 GAGACCATGTGGTGGAAGGGGAACCGTATGCTGGTTATGAT GAGACCATGTGGTGGAAGGTGAACCGTATGCTGGTTATGAT < 41bp 0.546579032671721 0.831488644714029 NA NA prediction 0.569819224084615 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179019442 chr1:179019441 synonymous SNV . 0 20 hm7G_associated_SNPs_15733 0 0 1 0 2 FAM20B chr1:179019500 5'GT 179019500 Upstream 60bp 15057 chr1 110169391 110169391 1 + G T THCA 110169392 + 110169372 110169412 41 GCAGCCAAGAGTGTGGTGCGGGCGCTCTTCATCCGGGAGAA GCAGCCAAGAGTGTGGTGCTGGCGCTCTTCATCCGGGAGAA < 41bp 0.453758324414383 0.784893228725992 NA NA prediction 0.569786457451983 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110169392 chr1:110169391 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_15734 0 0 0 0 1 AMPD2 chr1:110169348 3'AG 110169348 Downstream 44bp 15058 chr1 180794316 180794316 1 + G T COAD 180794317 + 180794297 180794337 41 CTAGATTGCTGGATTCCTCGGGATATTGTGGTGCCTGAGCC CTAGATTGCTGGATTCCTCTGGATATTGTGGTGCCTGAGCC < 41bp 0.468410214986628 0.784861779764987 NA NA prediction 0.569723559529973 Functional Gain - XPR1 ENSG00000143324 CDS Human protein_coding chr1:180794317 chr1:180794316 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_15735 0 0 1 0 1 XPR1 chr1:180794301 3'AG 180794301 Downstream 16bp 15059 chr17 78059896 78059896 1 + G T OV 78059897 + 78059877 78059917 41 GTCCAGGCCCAGGTGACCTGGCTGCGCCTGCAGCAGGAGAT GTCCAGGCCCAGGTGACCTTGCTGCGCCTGCAGCAGGAGAT < 41bp 0.439583197935904 0.784860605781923 NA NA prediction 0.569721211563845 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78059897 chr17:78059896 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_15736 0 0 0 0 1 CCDC40 chr17:78059802 3'AG 78059802 Downstream 95bp 15060 chr11 56954786 56954786 1 + G T LUSC 56954787 + 56954767 56954807 41 CGCTCTTCTCACTCACTGAGGAGAGCTTCAAGGCCTGCCAC CGCTCTTCTCACTCACTGATGAGAGCTTCAAGGCCTGCCAC < 41bp 0.532186081946832 0.817041565600192 NA NA prediction 0.569710967306721 Functional Gain - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56954787 chr11:56954786 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_15737 0 0 0 0 1 LRRC55 chr11:56954719 3'AG 56954719 Downstream 68bp 15061 chr20 2381064 2381064 1 + G T LIHC 2381065 + 2381045 2381085 41 ACTCCTTCGGGCGGACCCTGGAGGACCTGACAGAAGACAGC ACTCCTTCGGGCGGACCCTTGAGGACCTGACAGAAGACAGC < 41bp 0.463240173021702 0.784849076029018 NA NA prediction 0.569698152058035 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2381065 chr20:2381064 synonymous SNV . 0 20 hm7G_associated_SNPs_15738 0 0 0 0 1 TGM6 chr20:2381090 5'GT 2381090 Upstream 27bp 15062 chr2 26407179 26407179 1 + G T LIHC 26407180 + 26407160 26407200 41 GCGACGAGCTCACTCTTATGGGCCAGGCGGAGATCCTGTGC GCGACGAGCTCACTCTTATTGGCCAGGCGGAGATCCTGTGC < 41bp 0.570412491845762 0.855258471978049 NA NA prediction 0.569691960264575 Functional Gain - GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26407180 chr2:26407179 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_15740 0 0 0 0 1 GAREM2 chr2:26407102 3'AG 26407102 Downstream 78bp 15063 chr12 49312551 49312551 1 + G T LGG 49312552 + 49312532 49312572 41 GGTATATCCGTAATGACAAGGAATTGGTCCTTGTACAACTG GGTATATCCGTAATGACAATGAATTGGTCCTTGTACAACTG < 41bp 0.550983239483261 0.83582072426692 NA NA prediction 0.569674969567319 Functional Gain - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49312552 chr12:49312551 nonsynonymous SNV 0.876 2 20 hm7G_associated_SNPs_15741 0 0 0 0 1 CCDC65 chr12:49312468 3'AG 49312468 Downstream 84bp 15064 chr16 31409185 31409185 1 + G T LUAD 31409186 + 31409166 31409206 41 GGGTTCCTGCCTCCTGCTGGGCTCGCGCTGGGAGATCATCC GGGTTCCTGCCTCCTGCTGTGCTCGCGCTGGGAGATCATCC < 41bp 0.443714175235498 0.784826427499923 NA NA prediction 0.569652854999846 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31409186 chr16:31409185 nonsynonymous SNV 0.349 3 20 hm7G_associated_SNPs_15742 0 0 0 0 2 ITGAD chr16:31409116 3'AG 31409116 Downstream 70bp 15065 chr16 31409185 31409185 1 + G T LUAD 31409186 + 31409166 31409206 41 GGGTTCCTGCCTCCTGCTGGGCTCGCGCTGGGAGATCATCC GGGTTCCTGCCTCCTGCTGTGCTCGCGCTGGGAGATCATCC < 41bp 0.443714175235498 0.784826427499923 NA NA prediction 0.569652854999846 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31409186 chr16:31409185 nonsynonymous SNV 0.349 3 20 hm7G_associated_SNPs_15742 0 0 0 0 2 ITGAD chr16:31409230 5'GT 31409230 Upstream 46bp 15066 chr15 98509148 98509148 1 + G T UCEC 98509149 + 98509129 98509169 41 TTGGTCACCTCGTTTACTGGGAAATATGGAAGCATTCAGTA TTGGTCACCTCGTTTACTGTGAAATATGGAAGCATTCAGTA < 41bp 0.552839325145027 0.837658761128451 NA NA prediction 0.569638871966848 Functional Gain - ARRDC4 ENSG00000140450 CDS Human protein_coding chr15:98509149 chr15:98509148 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_15744 0 0 1 0 1 ARRDC4 chr15:98509125 3'AG 98509125 Downstream 24bp 15067 chr11 44939590 44939590 1 + G T LIHC 44939591 + 44939571 44939611 41 ATCCTGGCCTTCATCTTCAGGGAAAATGTACGTATCAGGCC ATCCTGGCCTTCATCTTCATGGAAAATGTACGTATCAGGCC < 41bp 0.558165939343937 0.842976627434126 NA NA prediction 0.569621376180378 Functional Gain - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44939591 chr11:44939590 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_15745 0 0 0 0 2 TSPAN18 chr11:44939523 3'AG 44939523 Downstream 68bp 15068 chr11 44939590 44939590 1 + G T LIHC 44939591 + 44939571 44939611 41 ATCCTGGCCTTCATCTTCAGGGAAAATGTACGTATCAGGCC ATCCTGGCCTTCATCTTCATGGAAAATGTACGTATCAGGCC < 41bp 0.558165939343937 0.842976627434126 NA NA prediction 0.569621376180378 Functional Gain - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44939591 chr11:44939590 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_15745 0 0 0 0 2 TSPAN18 chr11:44939597 5'GT 44939597 Upstream 8bp 15069 chr3 52524090 52524090 1 + G T THYM 52524091 + 52524071 52524111 41 AGGAGGCCCCCCGTCTTCAGGTTGAAAACGAGGAGCTGAGG AGGAGGCCCCCCGTCTTCATGTTGAAAACGAGGAGCTGAGG < 41bp 0.463158335224712 0.784790700635146 NA NA prediction 0.569581401270292 Functional Gain - NISCH ENSG00000010322 splicing Human protein_coding chr3:52524091 chr3:52524090 . 0.942 0 20 hm7G_associated_SNPs_15748 0 0 1 0 1 NISCH chr3:52524048 3'AG 52524048 Downstream 43bp 15070 chr14 77797487 77797487 1 + G T STAD 77797488 + 77797468 77797508 41 TGGTCTTGGAGGCCTTCCAGGTGTCTCACCCCTGCCGGCAG TGGTCTTGGAGGCCTTCCATGTGTCTCACCCCTGCCGGCAG < 41bp 0.48425098690888 0.784783484007979 NA NA prediction 0.569566968015958 Functional Gain - GSTZ1 ENSG00000100577 CDS Human protein_coding chr14:77797488 chr14:77797487 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_15750 0 0 0 0 1 GSTZ1 chr14:77797412 3'AG 77797412 Downstream 76bp 15071 chr1 186275524 186275524 1 + G T UCEC 186275525 + 186275505 186275545 41 TGTAGATGAAGCTGGAAGTGGATTGGACAATGGTGACTTCA TGTAGATGAAGCTGGAAGTTGATTGGACAATGGTGACTTCA < 41bp 0.49570364377754 0.784780323192829 NA NA prediction 0.569560646385658 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186275525 chr1:186275524 stopgain 0.852 0 20 hm7G_associated_SNPs_15751 0 0 0 0 1 PRG4 chr1:186275450 3'AG 186275450 Downstream 75bp 15072 chr12 52307369 52307369 1 + G T OV 52307370 + 52307350 52307390 41 ACCTCCTTCGGAGCAGCCGGGAACAGATGGCCAGCTGGCCC ACCTCCTTCGGAGCAGCCGTGAACAGATGGCCAGCTGGCCC < 41bp 0.461759773730487 0.784778231600358 NA NA prediction 0.569556463200716 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52307370 chr12:52307369 stopgain 0.001 0 20 hm7G_associated_SNPs_15752 0 0 0 0 1 ACVRL1 chr12:52307343 3'AG 52307343 Downstream 27bp 15073 chr1 206666428 206666428 1 + G T UCEC 206666429 + 206666409 206666449 41 CCTGTAACACAGAAGCCCAGGGGGTCCAGGAGAGTCTCAGC CCTGTAACACAGAAGCCCATGGGGTCCAGGAGAGTCTCAGC < 41bp 0.576592103415118 0.861366103909519 NA NA prediction 0.569548000988801 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206666429 chr1:206666428 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_15755 0 0 0 0 1 IKBKE chr1:206666452 5'GT 206666452 Upstream 25bp 15074 chr12 12037509 12037509 1 + G T COAD 12037510 + 12037490 12037530 41 ACGGACTGGCTCGACTGTGGGGAAACCATAAGGTAAAAGGG ACGGACTGGCTCGACTGTGTGGAAACCATAAGGTAAAAGGG < 41bp 0.486322416857408 0.784756461222728 NA NA prediction 0.569512922445456 Functional Gain - ETV6 ENSG00000139083 CDS Human protein_coding chr12:12037510 chr12:12037509 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15756 0 0 0 0 1 ETV6 chr12:12037521 5'GT 12037521 Upstream 13bp 15075 chr5 96332125 96332125 1 + G T ESCA 96332126 + 96332106 96332146 41 CTGGTAACAATGAAGTGGTGGAATGACCTATGGCTAAATGA CTGGTAACAATGAAGTGGTTGAATGACCTATGGCTAAATGA < 41bp 0.462969877248346 0.784743857050327 NA NA prediction 0.569487714100654 Functional Gain - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96332126 chr5:96332125 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_15758 0 0 1 0 1 LNPEP chr5:96332094 3'AG 96332094 Downstream 32bp 15076 chr6 130387511 130387511 1 + G T UCEC 130387512 + 130387492 130387532 41 TTTCAGGTTTGTGGATACCGGATAAAGCTTCACTTTGATGG TTTCAGGTTTGTGGATACCTGATAAAGCTTCACTTTGATGG < 41bp 0.485785852551063 0.784738085940365 NA NA prediction 0.569476171880731 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130387512 chr6:130387511 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_15760 0 0 0 0 1 L3MBTL3 chr6:130387498 3'AG 130387498 Downstream 14bp 15077 chr7 133821805 133821805 1 + G T UCEC 133821806 + 133821786 133821826 41 ATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCAT ATGGGGTCCTGAGAGAGGATGCTGTGGCCAAAGCACTCCAT < 41bp 0.558276838891725 0.843014169910427 NA NA prediction 0.569474662037404 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133821806 chr7:133821805 nonsynonymous SNV 0.304 0 20 hm7G_associated_SNPs_15761 0 0 0 0 2 LRGUK chr7:133821776 3'AG 133821776 Downstream 30bp 15078 chr7 133821805 133821805 1 + G T UCEC 133821806 + 133821786 133821826 41 ATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCAT ATGGGGTCCTGAGAGAGGATGCTGTGGCCAAAGCACTCCAT < 41bp 0.558276838891725 0.843014169910427 NA NA prediction 0.569474662037404 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133821806 chr7:133821805 nonsynonymous SNV 0.304 0 20 hm7G_associated_SNPs_15761 0 0 0 0 2 LRGUK chr7:133821883 5'GT 133821883 Upstream 79bp 15079 chr12 9000181 9000181 1 + G T UCEC 9000182 + 9000162 9000202 41 CCCCTCCCAGCAGCTTCCAGGAGCAGAAGTGGAGCTGCAGC CCCCTCCCAGCAGCTTCCATGAGCAGAAGTGGAGCTGCAGC < 41bp 0.454249531830821 0.784725146740512 NA NA prediction 0.569450293481023 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9000182 chr12:9000181 stopgain 0.997 1 20 hm7G_associated_SNPs_15764 0 0 0 0 1 A2ML1 chr12:9000145 3'AG 9000145 Downstream 37bp 15080 chrX 115576198 115576198 1 + G T KIRC 115576199 + 115576179 115576219 41 TGGAGCAGCACTATTTAAAGGAATCAAATCGTCTGGCAAGG TGGAGCAGCACTATTTAAATGAATCAAATCGTCTGGCAAGG < 41bp 0.535893266209032 0.820567907785417 NA NA prediction 0.569349283152769 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115576199 chrX:115576198 stopgain 1.000 1 20 hm7G_associated_SNPs_15767 0 0 1 0 1 SLC6A14 chrX:115576218 5'GT 115576218 Upstream 21bp 15081 chr7 129367175 129367175 1 + G T LUAD 129367176 + 129367156 129367196 41 GGAAACCGCAGCAGCCGTCGGAGCACTTACTGGAGTCCAAG GGAAACCGCAGCAGCCGTCTGAGCACTTACTGGAGTCCAAG < 41bp 0.561791487169247 0.846438790261613 NA NA prediction 0.569294606184732 Functional Gain - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129367176 chr7:129367175 stopgain 0.997 1 20 hm7G_associated_SNPs_15768 0 0 1 0 2 NRF1 chr7:129367081 3'AG 129367081 Downstream 95bp 15082 chr7 129367175 129367175 1 + G T LUAD 129367176 + 129367156 129367196 41 GGAAACCGCAGCAGCCGTCGGAGCACTTACTGGAGTCCAAG GGAAACCGCAGCAGCCGTCTGAGCACTTACTGGAGTCCAAG < 41bp 0.561791487169247 0.846438790261613 NA NA prediction 0.569294606184732 Functional Gain - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129367176 chr7:129367175 stopgain 0.997 1 20 hm7G_associated_SNPs_15768 0 0 1 0 2 NRF1 chr7:129367205 5'GT 129367205 Upstream 31bp 15083 chr17 7907061 7907061 1 + G T rs181800610 7907062 + 7907042 7907082 41 CCCGGGAGGCCCTGAGGAAGGTTCGGGACGGGCCCAGGGTC CCCGGGAGGCCCTGAGGAATGTTCGGGACGGGCCCAGGGTC < 41bp 0.463855241032456 0.784643401980501 NA NA prediction 0.569286803961002 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7907062 chr17:7907061 nonsynonymous SNV 0.303 0 20 hm7G_associated_SNPs_15769 0 0 0 0 1 GUCY2D chr17:7907086 5'GT 7907086 Upstream 26bp 15084 chr17 72349367 72349367 1 + G T LIHC 72349368 + 72349348 72349388 41 GTGTTCAAGGCTGGTACTGGGGCCTGGCAGGCAAAAAGCTC GTGTTCAAGGCTGGTACTGTGGCCTGGCAGGCAAAAAGCTC < 41bp 0.445663506717607 0.784637614252357 NA NA prediction 0.569275228504715 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349368 chr17:72349367 nonsynonymous SNV 0.242 0 20 hm7G_associated_SNPs_15770 0 0 0 0 2 KIF19 chr17:72349335 3'AG 72349335 Downstream 33bp 15085 chr17 72349367 72349367 1 + G T LIHC 72349368 + 72349348 72349388 41 GTGTTCAAGGCTGGTACTGGGGCCTGGCAGGCAAAAAGCTC GTGTTCAAGGCTGGTACTGTGGCCTGGCAGGCAAAAAGCTC < 41bp 0.445663506717607 0.784637614252357 NA NA prediction 0.569275228504715 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72349368 chr17:72349367 nonsynonymous SNV 0.242 0 20 hm7G_associated_SNPs_15770 0 0 0 0 2 KIF19 chr17:72349440 5'GT 72349440 Upstream 74bp 15086 chr2 27499674 27499674 1 + G T STAD 27499675 + 27499655 27499695 41 CAGTGCTGGATCTTAAGAAGGGCGCCTCACCTGAAGACTTC CAGTGCTGGATCTTAAGAATGGCGCCTCACCTGAAGACTTC < 41bp 0.562281678045491 0.846902529524983 NA NA prediction 0.569241702958984 Functional Gain - DNAJC5G ENSG00000163793 CDS Human protein_coding chr2:27499675 chr2:27499674 nonsynonymous SNV 0.567 3 20 hm7G_associated_SNPs_15771 0 0 0 0 2 DNAJC5G chr2:27499594 3'AG 27499594 Downstream 81bp 15087 chr2 27499674 27499674 1 + G T STAD 27499675 + 27499655 27499695 41 CAGTGCTGGATCTTAAGAAGGGCGCCTCACCTGAAGACTTC CAGTGCTGGATCTTAAGAATGGCGCCTCACCTGAAGACTTC < 41bp 0.562281678045491 0.846902529524983 NA NA prediction 0.569241702958984 Functional Gain - DNAJC5G ENSG00000163793 CDS Human protein_coding chr2:27499675 chr2:27499674 nonsynonymous SNV 0.567 3 20 hm7G_associated_SNPs_15771 0 0 0 0 2 DNAJC5G chr2:27499709 5'GT 27499709 Upstream 36bp 15088 chr12 9985906 9985906 1 + G T LIHC 9985907 + 9985887 9985927 41 CCTGTATTCAAGTTTCTCAGGGAGTATTGCTAAAATGCCAA CCTGTATTCAAGTTTCTCATGGAGTATTGCTAAAATGCCAA < 41bp 0.521698408705093 0.806318199885262 NA NA prediction 0.569239582360338 Functional Gain - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985907 chr12:9985906 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_15772 0 0 0 3 1 KLRF1 chr12:9985899 3'AG 9985899 Downstream 8bp 15089 chr10 12802987 12802987 1 + G T UCEC 12802988 + 12802968 12803008 41 TGACCGGATAGTGGAGAAGGGGTTTTATACAGAGAAGGATG TGACCGGATAGTGGAGAAGTGGTTTTATACAGAGAAGGATG < 41bp 0.472287626421712 0.784616053319598 NA NA prediction 0.569232106639197 Functional Gain - CAMK1D ENSG00000183049 CDS Human protein_coding chr10:12802988 chr10:12802987 nonsynonymous SNV 0.954 4 20 hm7G_associated_SNPs_15774 0 0 1 0 1 CAMK1D chr10:12803085 5'GT 12803085 Upstream 99bp 15090 chr1 74929126 74929126 1 + G T SARC 74929127 + 74929107 74929147 41 TGACCATTTGGTTTGCAGCGGCTGCGGCAGCAGACATGGCT TGACCATTTGGTTTGCAGCTGCTGCGGCAGCAGACATGGCT < 41bp 0.518389591936462 0.802996014411798 NA NA prediction 0.569212844950673 Functional Gain - FPGT-TNNI3K;TNNI3K ENSG00000116783;ENSG00000259030 CDS Human other chr1:74929127 chr1:74929126 synonymous SNV . 0 20 hm7G_associated_SNPs_15776 0 0 0 0 1 FPGT-TNNI3K;TNNI3K chr1:74929125 3'AG 74929125 Downstream 2bp 15091 chr6 52943674 52943674 1 + G T LUSC 52943675 + 52943655 52943695 41 TTATACCCGGTCTCCAGATGGTGATGGCGTTGGAAACAGCT TTATACCCGGTCTCCAGATTGTGATGGCGTTGGAAACAGCT < 41bp 0.476769385556652 0.784570624482892 NA NA prediction 0.569141248965784 Functional Gain - FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943675 chr6:52943674 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_15777 0 0 1 0 2 FBXO9 chr6:52943597 3'AG 52943597 Downstream 78bp 15092 chr6 52943674 52943674 1 + G T LUSC 52943675 + 52943655 52943695 41 TTATACCCGGTCTCCAGATGGTGATGGCGTTGGAAACAGCT TTATACCCGGTCTCCAGATTGTGATGGCGTTGGAAACAGCT < 41bp 0.476769385556652 0.784570624482892 NA NA prediction 0.569141248965784 Functional Gain - FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52943675 chr6:52943674 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_15777 0 0 1 0 2 FBXO9 chr6:52943696 5'GT 52943696 Upstream 23bp 15093 chr17 40001990 40001990 1 + G T KIRC 40001991 + 40001971 40002011 41 AAGCGCCACAACACTTTATGGGAAGGTAAAGGACCAGGGTG AAGCGCCACAACACTTTATTGGAAGGTAAAGGACCAGGGTG < 41bp 0.544052463002993 0.828622550064096 NA NA prediction 0.569140174122206 Functional Gain - KLHL10 ENSG00000161594 CDS Human protein_coding chr17:40001991 chr17:40001990 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_15778 0 0 0 0 1 KLHL10 chr17:40001995 5'GT 40001995 Upstream 6bp 15094 chr17 32614187 32614187 1 + G T LGG 32614188 + 32614168 32614208 41 CAGCGACTAGAGAGCTACAGGAGAATCACCAGTGGCAAATG CAGCGACTAGAGAGCTACATGAGAATCACCAGTGGCAAATG < 41bp 0.53924270233122 0.823809752808324 NA NA prediction 0.569134100954209 Functional Gain - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32614188 chr17:32614187 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_15780 0 0 0 0 2 CCL11 chr17:32614115 3'AG 32614115 Downstream 73bp 15095 chr17 32614187 32614187 1 + G T LGG 32614188 + 32614168 32614208 41 CAGCGACTAGAGAGCTACAGGAGAATCACCAGTGGCAAATG CAGCGACTAGAGAGCTACATGAGAATCACCAGTGGCAAATG < 41bp 0.53924270233122 0.823809752808324 NA NA prediction 0.569134100954209 Functional Gain - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32614188 chr17:32614187 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_15780 0 0 0 0 2 CCL11 chr17:32614226 5'GT 32614226 Upstream 40bp 15096 chr6 159084396 159084396 1 + G T UCEC 159084397 + 159084377 159084417 41 AGGCGGTTCAAAACACAGAGGAGGAGAGGACACGGTAGGCT AGGCGGTTCAAAACACAGATGAGGAGAGGACACGGTAGGCT < 41bp 0.557159409150598 0.841725358777825 NA NA prediction 0.569131899254453 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159084397 chr6:159084396 nonsynonymous SNV 0.411 1 20 hm7G_associated_SNPs_15781 0 0 0 0 1 SYTL3 chr6:159084410 5'GT 159084410 Upstream 15bp 15097 chr17 48597017 48597017 1 + G T COAD 48597018 + 48596998 48597038 41 CAGAGCTGGGAGAACAGTGGGTTCTGGAGTCGACTGGAATA CAGAGCTGGGAGAACAGTGTGTTCTGGAGTCGACTGGAATA < 41bp 0.474434682795794 0.784565251469464 NA NA prediction 0.569130502938928 Functional Gain - MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48597018 chr17:48597017 nonsynonymous SNV 0.097 0 20 hm7G_associated_SNPs_15782 0 0 0 0 1 MYCBPAP chr17:48597001 3'AG 48597001 Downstream 17bp 15098 chr1 12820720 12820720 1 + G T COAD 12820721 + 12820701 12820741 41 AGCTCCCCCTACAAACTATGGACTCTATGAGCAGCTCAAGC AGCTCCCCCTACAAACTATTGACTCTATGAGCAGCTCAAGC < 41bp 0.5402383248688 0.824749587949142 NA NA prediction 0.569022526160684 Functional Gain - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12820721 chr1:12820720 stopgain 0.944 1 20 hm7G_associated_SNPs_15788 0 0 0 0 1 C1orf158 chr1:12820703 3'AG 12820703 Downstream 18bp 15099 chr12 6927621 6927621 1 + G T LIHC 6927622 + 6927602 6927642 41 CCACCCCGGTGCAGCCAATGGCCCTGATTGTGCTGGGGGGC CCACCCCGGTGCAGCCAATTGCCCTGATTGTGCTGGGGGGC < 41bp 0.458858937077447 0.784508796120826 NA NA prediction 0.569017592241652 Functional Gain - CD4 ENSG00000010610 CDS Human protein_coding chr12:6927622 chr12:6927621 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_15789 0 0 0 0 1 CD4 chr12:6927587 3'AG 6927587 Downstream 35bp 15100 chr2 74710514 74710514 1 + G T rs185669877 74710515 + 74710495 74710535 41 CAAACTTTGCAAGGAATTCGGTCCAGAGGATTACGGCGAAG CAAACTTTGCAAGGAATTCTGTCCAGAGGATTACGGCGAAG < 41bp 0.547368710574763 0.831872595751497 NA NA prediction 0.569007770353468 Functional Gain - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74710515 chr2:74710514 nonsynonymous SNV 0.365 0 20 hm7G_associated_SNPs_15790 0 0 1 0 2 TTC31 chr2:74710449 3'AG 74710449 Downstream 66bp 15101 chr2 74710514 74710514 1 + G T rs185669877 74710515 + 74710495 74710535 41 CAAACTTTGCAAGGAATTCGGTCCAGAGGATTACGGCGAAG CAAACTTTGCAAGGAATTCTGTCCAGAGGATTACGGCGAAG < 41bp 0.547368710574763 0.831872595751497 NA NA prediction 0.569007770353468 Functional Gain - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74710515 chr2:74710514 nonsynonymous SNV 0.365 0 20 hm7G_associated_SNPs_15790 0 0 1 0 2 TTC31 chr2:74710537 5'GT 74710537 Upstream 24bp 15102 chr4 174223255 174223255 1 + G T LUAD 174223256 + 174223236 174223276 41 GAGAGTTCTTCTTTGAATTGGGTCTCTATGATCCAGGTCTC GAGAGTTCTTCTTTGAATTTGGTCTCTATGATCCAGGTCTC < 41bp 0.46835742290705 0.784497019787759 NA NA prediction 0.568994039575519 Functional Gain - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174223256 chr4:174223255 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15791 0 0 1 0 2 GALNT7 chr4:174223198 3'AG 174223198 Downstream 58bp 15103 chr4 174223255 174223255 1 + G T LUAD 174223256 + 174223236 174223276 41 GAGAGTTCTTCTTTGAATTGGGTCTCTATGATCCAGGTCTC GAGAGTTCTTCTTTGAATTTGGTCTCTATGATCCAGGTCTC < 41bp 0.46835742290705 0.784497019787759 NA NA prediction 0.568994039575519 Functional Gain - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174223256 chr4:174223255 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_15791 0 0 1 0 2 GALNT7 chr4:174223315 5'GT 174223315 Upstream 61bp 15104 chr21 17183456 17183456 1 + G T SARC 17183457 + 17183437 17183477 41 ATTTTTTAACATACTTTAGGGATGAAGAGAAGCCAAAGAAC ATTTTTTAACATACTTTAGTGATGAAGAGAAGCCAAAGAAC < 41bp 0.484724512193121 0.784468156600147 NA NA prediction 0.568936313200293 Functional Gain - USP25 ENSG00000155313 CDS Human protein_coding chr21:17183457 chr21:17183456 synonymous SNV . 0 20 hm7G_associated_SNPs_15795 0 0 1 0 2 USP25 chr21:17183456 3'AG 17183456 Downstream 1bp 15105 chr21 17183456 17183456 1 + G T SARC 17183457 + 17183437 17183477 41 ATTTTTTAACATACTTTAGGGATGAAGAGAAGCCAAAGAAC ATTTTTTAACATACTTTAGTGATGAAGAGAAGCCAAAGAAC < 41bp 0.484724512193121 0.784468156600147 NA NA prediction 0.568936313200293 Functional Gain - USP25 ENSG00000155313 CDS Human protein_coding chr21:17183457 chr21:17183456 synonymous SNV . 0 20 hm7G_associated_SNPs_15795 0 0 1 0 2 USP25 chr21:17183529 5'GT 17183529 Upstream 74bp 15106 chr19 42839258 42839258 1 + G T THCA 42839259 + 42839239 42839279 41 TGCACCTGTGGGAGAACCAGGGGGCTGGGTGGTGGCACAAC TGCACCTGTGGGAGAACCATGGGGCTGGGTGGTGGCACAAC < 41bp 0.454029576139359 0.784467778473971 NA NA prediction 0.568935556947942 Functional Gain - MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42839259 chr19:42839258 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15796 0 0 1 0 1 MEGF8 chr19:42839187 3'AG 42839187 Downstream 72bp 15107 chr11 60687353 60687353 1 + G T STAD 60687354 + 60687334 60687374 41 ATAGGTCGATCTGTGCGAGGGACACTGGATGCCTGGATTGG ATAGGTCGATCTGTGCGAGTGACACTGGATGCCTGGATTGG < 41bp 0.557320746371456 0.84177751424095 NA NA prediction 0.568913535738987 Functional Gain - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60687354 chr11:60687353 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_15797 0 0 1 0 1 TMEM109 chr11:60687402 5'GT 60687402 Upstream 50bp 15108 chr6 32411199 32411199 1 + G T UCEC 32411200 + 32411180 32411220 41 GAGGACGTTTACGACTGCAGGGTGGAGCACTGGGGCTTGGA GAGGACGTTTACGACTGCATGGTGGAGCACTGGGGCTTGGA < 41bp 0.493567491670773 0.78445151329756 NA NA prediction 0.56890302659512 Functional Gain - HLA-DRA ENSG00000204287 CDS Human protein_coding chr6:32411200 chr6:32411199 nonsynonymous SNV 0.199 1 20 hm7G_associated_SNPs_15799 0 0 0 0 1 HLA-DRA chr6:32411243 5'GT 32411243 Upstream 45bp 15109 chr7 106786829 106786829 1 + G T LUSC 106786830 + 106786810 106786850 41 TGATAATCGTGGGAGTTTCGGCGAACTGGCCTTAATGTACA TGATAATCGTGGGAGTTTCTGCGAACTGGCCTTAATGTACA < 41bp 0.542137706685095 0.826584553360233 NA NA prediction 0.568893693350277 Functional Gain - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106786830 chr7:106786829 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_15800 0 0 1 0 2 PRKAR2B chr7:106786753 3'AG 106786753 Downstream 77bp 15110 chr7 106786829 106786829 1 + G T LUSC 106786830 + 106786810 106786850 41 TGATAATCGTGGGAGTTTCGGCGAACTGGCCTTAATGTACA TGATAATCGTGGGAGTTTCTGCGAACTGGCCTTAATGTACA < 41bp 0.542137706685095 0.826584553360233 NA NA prediction 0.568893693350277 Functional Gain - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106786830 chr7:106786829 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_15800 0 0 1 0 2 PRKAR2B chr7:106786906 5'GT 106786906 Upstream 78bp 15111 chr7 40127843 40127843 1 + G T OV 40127844 + 40127824 40127864 41 CAGGAAGGACTTGTCTCTGGGCTTGGATGACAGCAGAACCA CAGGAAGGACTTGTCTCTGTGCTTGGATGACAGCAGAACCA < 41bp 0.458774972164618 0.784436124446665 NA NA prediction 0.568872248893331 Functional Gain - CDK13 ENSG00000065883 CDS Human protein_coding chr7:40127844 chr7:40127843 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15801 0 0 1 0 1 CDK13 chr7:40127930 5'GT 40127930 Upstream 88bp 15112 chr19 5914495 5914495 1 + G T KIRP 5914496 + 5914476 5914516 41 CCTCGGGCATCCAGGGCCTGGCCAGGTGAGCTGTCCCCTCT CCTCGGGCATCCAGGGCCTTGCCAGGTGAGCTGTCCCCTCT < 41bp 0.562880998690118 0.84731131591434 NA NA prediction 0.568860634448445 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5914496 chr19:5914495 synonymous SNV . 0 20 hm7G_associated_SNPs_15802 0 0 0 0 2 CAPS chr19:5914396 3'AG 5914396 Downstream 100bp 15113 chr19 5914495 5914495 1 + G T KIRP 5914496 + 5914476 5914516 41 CCTCGGGCATCCAGGGCCTGGCCAGGTGAGCTGTCCCCTCT CCTCGGGCATCCAGGGCCTTGCCAGGTGAGCTGTCCCCTCT < 41bp 0.562880998690118 0.84731131591434 NA NA prediction 0.568860634448445 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5914496 chr19:5914495 synonymous SNV . 0 20 hm7G_associated_SNPs_15802 0 0 0 0 2 CAPS chr19:5914500 5'GT 5914500 Upstream 6bp 15114 chr10 13642315 13642315 1 + G T SARC 13642316 + 13642296 13642336 41 TAGAACTTGAACTGGCAGAGGAAAAATTACCTATGACGCTT TAGAACTTGAACTGGCAGATGAAAAATTACCTATGACGCTT < 41bp 0.474152263480414 0.784428393364428 NA NA prediction 0.568856786728856 Functional Gain - PRPF18 ENSG00000165630 CDS Human protein_coding chr10:13642316 chr10:13642315 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_15803 0 0 1 0 2 PRPF18 chr10:13642244 3'AG 13642244 Downstream 72bp 15115 chr10 13642315 13642315 1 + G T SARC 13642316 + 13642296 13642336 41 TAGAACTTGAACTGGCAGAGGAAAAATTACCTATGACGCTT TAGAACTTGAACTGGCAGATGAAAAATTACCTATGACGCTT < 41bp 0.474152263480414 0.784428393364428 NA NA prediction 0.568856786728856 Functional Gain - PRPF18 ENSG00000165630 CDS Human protein_coding chr10:13642316 chr10:13642315 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_15803 0 0 1 0 2 PRPF18 chr10:13642348 5'GT 13642348 Upstream 34bp 15116 chr19 46181349 46181349 1 + G T THCA 46181350 + 46181330 46181370 41 CGCCCTCTCTCCCCAGGCTGGCTCGCTCCACGCTGACGCTG CGCCCTCTCTCCCCAGGCTTGCTCGCTCCACGCTGACGCTG < 41bp 0.572488653079244 0.856900157092086 NA NA prediction 0.568823008025684 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46181350 chr19:46181349 synonymous SNV . 0 20 hm7G_associated_SNPs_15805 0 0 0 0 1 GIPR chr19:46181346 3'AG 46181346 Downstream 4bp 15117 chr3 10268066 10268066 1 + G T STAD 10268067 + 10268047 10268087 41 CTCTCCAGGTGTTGGCCGAGGTCCTCACGGGCATCCCTGCA CTCTCCAGGTGTTGGCCGATGTCCTCACGGGCATCCCTGCA < 41bp 0.464746167669272 0.78440092414528 NA NA prediction 0.568801848290559 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10268067 chr3:10268066 nonsynonymous SNV 0.958 3 20 hm7G_associated_SNPs_15808 0 0 1 0 2 IRAK2 chr3:10268055 3'AG 10268055 Downstream 12bp 15118 chr3 10268066 10268066 1 + G T STAD 10268067 + 10268047 10268087 41 CTCTCCAGGTGTTGGCCGAGGTCCTCACGGGCATCCCTGCA CTCTCCAGGTGTTGGCCGATGTCCTCACGGGCATCCCTGCA < 41bp 0.464746167669272 0.78440092414528 NA NA prediction 0.568801848290559 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10268067 chr3:10268066 nonsynonymous SNV 0.958 3 20 hm7G_associated_SNPs_15808 0 0 1 0 2 IRAK2 chr3:10268117 5'GT 10268117 Upstream 52bp 15119 chr1 89206769 89206769 1 + G T LUSC 89206770 + 89206750 89206790 41 AGAAATTGGATGATATCAAGGATCGAATTAAGAGAGAAATA AGAAATTGGATGATATCAATGATCGAATTAAGAGAGAAATA < 41bp 0.527157327190143 0.811537110008709 NA NA prediction 0.568759565637133 Functional Gain - PKN2 ENSG00000065243 CDS Human protein_coding chr1:89206770 chr1:89206769 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_15810 0 0 1 0 1 PKN2 chr1:89206671 3'AG 89206671 Downstream 99bp 15120 chr5 150843145 150843145 1 + G T KIRC 150843146 + 150843126 150843166 41 CTTGATCCACCTGTTAAAAGGCAACATTGGCACAGGACTCC CTTGATCCACCTGTTAAAATGCAACATTGGCACAGGACTCC < 41bp 0.57287376333893 0.857223445293758 NA NA prediction 0.568699363909657 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150843146 chr5:150843145 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15812 0 0 1 0 2 SLC36A1 chr5:150843114 3'AG 150843114 Downstream 32bp 15121 chr5 150843145 150843145 1 + G T KIRC 150843146 + 150843126 150843166 41 CTTGATCCACCTGTTAAAAGGCAACATTGGCACAGGACTCC CTTGATCCACCTGTTAAAATGCAACATTGGCACAGGACTCC < 41bp 0.57287376333893 0.857223445293758 NA NA prediction 0.568699363909657 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150843146 chr5:150843145 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15812 0 0 1 0 2 SLC36A1 chr5:150843204 5'GT 150843204 Upstream 60bp 15122 chr14 31177242 31177242 1 + G T COAD 31177243 + 31177223 31177263 41 ATCACAGTTTGTGATGGAAGGAGTGAAGAACCTGGTTTTGA ATCACAGTTTGTGATGGAATGAGTGAAGAACCTGGTTTTGA < 41bp 0.494807256208917 0.784332047752469 NA NA prediction 0.568664095504938 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31177243 chr14:31177242 stopgain 1.000 1 20 hm7G_associated_SNPs_15816 0 0 1 0 2 SCFD1 chr14:31177196 3'AG 31177196 Downstream 47bp 15123 chr14 31177242 31177242 1 + G T COAD 31177243 + 31177223 31177263 41 ATCACAGTTTGTGATGGAAGGAGTGAAGAACCTGGTTTTGA ATCACAGTTTGTGATGGAATGAGTGAAGAACCTGGTTTTGA < 41bp 0.494807256208917 0.784332047752469 NA NA prediction 0.568664095504938 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31177243 chr14:31177242 stopgain 1.000 1 20 hm7G_associated_SNPs_15816 0 0 1 0 2 SCFD1 chr14:31177271 5'GT 31177271 Upstream 30bp 15124 chr20 21689295 21689295 1 + G T LUSC 21689296 + 21689276 21689316 41 GCCACCCCCGCAGTGAATGGGCTAGAGAAACCTGCCTTAGA GCCACCCCCGCAGTGAATGTGCTAGAGAAACCTGCCTTAGA < 41bp 0.46479968081425 0.784325703288969 NA NA prediction 0.568651406577938 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21689296 chr20:21689295 nonsynonymous SNV 0.181 5 20 hm7G_associated_SNPs_15818 0 0 0 0 2 PAX1 chr20:21689196 3'AG 21689196 Downstream 100bp 15125 chr20 21689295 21689295 1 + G T LUSC 21689296 + 21689276 21689316 41 GCCACCCCCGCAGTGAATGGGCTAGAGAAACCTGCCTTAGA GCCACCCCCGCAGTGAATGTGCTAGAGAAACCTGCCTTAGA < 41bp 0.46479968081425 0.784325703288969 NA NA prediction 0.568651406577938 Functional Gain - PAX1 ENSG00000125813 CDS Human protein_coding chr20:21689296 chr20:21689295 nonsynonymous SNV 0.181 5 20 hm7G_associated_SNPs_15818 0 0 0 0 2 PAX1 chr20:21689338 5'GT 21689338 Upstream 44bp 15126 chr17 72937897 72937897 1 + G T LUAD 72937898 + 72937878 72937918 41 CCCACGCGGGGCCCCTCTGGGTGCGGGGTGAGTGTCAGGTT CCCACGCGGGGCCCCTCTGTGTGCGGGGTGAGTGTCAGGTT < 41bp 0.478562535401169 0.784322344584459 NA NA prediction 0.568644689168919 Functional Gain - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72937898 chr17:72937897 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_15819 0 0 0 0 1 OTOP3 chr17:72937904 5'GT 72937904 Upstream 8bp 15127 chr15 78764260 78764260 1 + G T LUAD 78764261 + 78764241 78764281 41 GAATGGTTTAGGGATTCTGGGGTGGGGTAAGTAAATGACTA GAATGGTTTAGGGATTCTGTGGTGGGGTAAGTAAATGACTA < 41bp 0.537445902861022 0.821767656527596 NA NA prediction 0.568643507333148 Functional Gain - IREB2 ENSG00000136381 CDS Human protein_coding chr15:78764261 chr15:78764260 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_15820 0 0 1 0 1 IREB2 chr15:78764266 5'GT 78764266 Upstream 7bp 15128 chr2 96262099 96262099 1 + G T UCEC 96262100 + 96262080 96262120 41 AGAGAAGTTGGGTCAAAATGGATCAAAAGAGTAAACACTTG AGAGAAGTTGGGTCAAAATTGATCAAAAGAGTAAACACTTG < 41bp 0.515510245486303 0.799825700860839 NA NA prediction 0.568630910749071 Functional Gain - TRIM43 ENSG00000144015 CDS Human protein_coding chr2:96262100 chr2:96262099 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_15822 0 0 0 0 1 TRIM43 chr2:96262180 5'GT 96262180 Upstream 82bp 15129 chr2 86711263 86711263 1 + G T SKCM 86711264 + 86711244 86711284 41 AGTAGGAGACTTCTGGGATGGATTTGAAGATGTTCCAAGTA AGTAGGAGACTTCTGGGATTGATTTGAAGATGTTCCAAGTA < 41bp 0.549457417181291 0.833763625896297 NA NA prediction 0.568612417430013 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86711264 chr2:86711263 stopgain 1.000 1 20 hm7G_associated_SNPs_15823 0 0 1 0 1 KDM3A chr2:86711281 5'GT 86711281 Upstream 19bp 15130 chr14 73421106 73421106 1 + G T LUAD 73421107 + 73421087 73421127 41 CCGCCAGGCTTGTCTCGGCGGGTCCTGTTGACCAACGTGGT CCGCCAGGCTTGTCTCGGCTGGTCCTGTTGACCAACGTGGT < 41bp 0.554414718762481 0.838709080799059 NA NA prediction 0.568588724073157 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421107 chr14:73421106 nonsynonymous SNV 0.607 1 20 hm7G_associated_SNPs_15824 0 0 1 0 2 DCAF4 chr14:73421094 3'AG 73421094 Downstream 13bp 15131 chr14 73421106 73421106 1 + G T LUAD 73421107 + 73421087 73421127 41 CCGCCAGGCTTGTCTCGGCGGGTCCTGTTGACCAACGTGGT CCGCCAGGCTTGTCTCGGCTGGTCCTGTTGACCAACGTGGT < 41bp 0.554414718762481 0.838709080799059 NA NA prediction 0.568588724073157 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73421107 chr14:73421106 nonsynonymous SNV 0.607 1 20 hm7G_associated_SNPs_15824 0 0 1 0 2 DCAF4 chr14:73421191 5'GT 73421191 Upstream 86bp 15132 chr1 160385651 160385651 1 + G T LUAD 160385652 + 160385632 160385672 41 ACACCGAGTCCCAGTACTCGGGCTATTCCTACAAGTCGGGC ACACCGAGTCCCAGTACTCTGGCTATTCCTACAAGTCGGGC < 41bp 0.449630035536898 0.784291278004634 NA NA prediction 0.568582556009268 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385652 chr1:160385651 synonymous SNV . 0 20 hm7G_associated_SNPs_15825 0 0 1 0 1 VANGL2 chr1:160385698 5'GT 160385698 Upstream 48bp 15133 chr22 44514977 44514977 1 + G T SARC 44514978 + 44514958 44514998 41 GGATCATTGTGAAGCAGCTGGAGGAAGACCTGTATGACGGC GGATCATTGTGAAGCAGCTTGAGGAAGACCTGTATGACGGC < 41bp 0.569137184456439 0.853422363862558 NA NA prediction 0.568570358812237 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44514978 chr22:44514977 synonymous SNV . 0 20 hm7G_associated_SNPs_15827 0 0 1 0 2 PARVB chr22:44514918 3'AG 44514918 Downstream 60bp 15134 chr22 44514977 44514977 1 + G T SARC 44514978 + 44514958 44514998 41 GGATCATTGTGAAGCAGCTGGAGGAAGACCTGTATGACGGC GGATCATTGTGAAGCAGCTTGAGGAAGACCTGTATGACGGC < 41bp 0.569137184456439 0.853422363862558 NA NA prediction 0.568570358812237 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44514978 chr22:44514977 synonymous SNV . 0 20 hm7G_associated_SNPs_15827 0 0 1 0 2 PARVB chr22:44515020 5'GT 44515020 Upstream 44bp 15135 chr11 76246979 76246979 1 + G T UCEC 76246980 + 76246960 76247000 41 TAATTGCTTCCCGGCGTCAGGATTGGTCAGAACATGAGATT TAATTGCTTCCCGGCGTCATGATTGGTCAGAACATGAGATT < 41bp 0.483938897834424 0.784283162292463 NA NA prediction 0.568566324584926 Functional Gain - EMSY ENSG00000158636 CDS Human protein_coding chr11:76246980 chr11:76246979 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15828 0 0 1 0 1 EMSY chr11:76246939 3'AG 76246939 Downstream 41bp 15136 chr1 45079853 45079853 1 + G T LIHC 45079854 + 45079834 45079874 41 TAGGTAAGAAGAAAGCAGCGGCATTGTTCGACAGCCAGGCC TAGGTAAGAAGAAAGCAGCTGCATTGTTCGACAGCCAGGCC < 41bp 0.567708877676012 0.851973421217945 NA NA prediction 0.568529087083865 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45079854 chr1:45079853 synonymous SNV . 0 20 hm7G_associated_SNPs_15831 0 0 0 0 1 RNF220 chr1:45079837 3'AG 45079837 Downstream 17bp 15137 chr6 25770394 25770394 1 + G T ESCA 25770395 + 25770375 25770415 41 CCCCAGTGGCTATGTGGCTGGAATATTTGGAGCCAAGTATG CCCCAGTGGCTATGTGGCTTGAATATTTGGAGCCAAGTATG < 41bp 0.466564783232707 0.784260878321495 NA NA prediction 0.56852175664299 Functional Gain - SLC17A4 ENSG00000146039 CDS Human protein_coding chr6:25770395 chr6:25770394 stopgain 0.979 0 20 hm7G_associated_SNPs_15833 0 0 0 0 1 SLC17A4 chr6:25770295 3'AG 25770295 Downstream 100bp 15138 chr1 154233385 154233385 1 + G T LUAD 154233386 + 154233366 154233406 41 AGGTGACCTCACAAAGTTCGGCCGTGGGGATGCCTCCTCCC AGGTGACCTCACAAAGTTCTGCCGTGGGGATGCCTCCTCCC < 41bp 0.568667214339506 0.852924631701422 NA NA prediction 0.568514834723831 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154233386 chr1:154233385 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_15835 0 0 1 0 1 UBAP2L chr1:154233368 3'AG 154233368 Downstream 18bp 15139 chr3 130881345 130881345 1 + G T LUSC 130881346 + 130881326 130881366 41 GGCTGAGGAAGCTCCAGGCGGCTGATGAGAAAGCCAGGAAG GGCTGAGGAAGCTCCAGGCTGCTGATGAGAAAGCCAGGAAG < 41bp 0.549186773823257 0.833443681758592 NA NA prediction 0.56851381587067 Functional Gain - NEK11 ENSG00000114670 CDS Human protein_coding chr3:130881346 chr3:130881345 synonymous SNV . 0 20 hm7G_associated_SNPs_15836 0 0 0 0 2 NEK11 chr3:130881252 3'AG 130881252 Downstream 94bp 15140 chr3 130881345 130881345 1 + G T LUSC 130881346 + 130881326 130881366 41 GGCTGAGGAAGCTCCAGGCGGCTGATGAGAAAGCCAGGAAG GGCTGAGGAAGCTCCAGGCTGCTGATGAGAAAGCCAGGAAG < 41bp 0.549186773823257 0.833443681758592 NA NA prediction 0.56851381587067 Functional Gain - NEK11 ENSG00000114670 CDS Human protein_coding chr3:130881346 chr3:130881345 synonymous SNV . 0 20 hm7G_associated_SNPs_15836 0 0 0 0 2 NEK11 chr3:130881371 5'GT 130881371 Upstream 27bp 15141 chr1 20915757 20915757 1 + G T SKCM 20915758 + 20915738 20915778 41 GGGCTGCCCTGCTCACCCAGGAGGGGAGAATCTTCAAAGGT GGGCTGCCCTGCTCACCCATGAGGGGAGAATCTTCAAAGGT < 41bp 0.478634908215947 0.784249884151867 NA NA prediction 0.568499768303734 Functional Gain - CDA ENSG00000158825 CDS Human protein_coding chr1:20915758 chr1:20915757 nonsynonymous SNV 0.096 0 20 hm7G_associated_SNPs_15838 0 0 0 0 1 CDA chr1:20915776 5'GT 20915776 Upstream 20bp 15142 chr14 105396429 105396429 1 + G T UCEC 105396430 + 105396410 105396450 41 AGTGCCAACATGGACTGGCGGTCTCTGACGCAGGTGAGTGC AGTGCCAACATGGACTGGCTGTCTCTGACGCAGGTGAGTGC < 41bp 0.552669791838496 0.836888760465887 NA NA prediction 0.568437937254781 Functional Gain - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105396430 chr14:105396429 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_15840 0 0 0 0 1 PLD4 chr14:105396442 5'GT 105396442 Upstream 14bp 15143 chr17 7318031 7318031 1 + G T UCEC 7318032 + 7318012 7318052 41 AAGGCAACTATGGGCTCCTGGACCAGATCCAGGCCCTGCGC AAGGCAACTATGGGCTCCTTGACCAGATCCAGGCCCTGCGC < 41bp 0.447030156550144 0.784199770787712 NA NA prediction 0.568399541575424 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7318032 chr17:7318031 synonymous SNV . 0 20 hm7G_associated_SNPs_15841 0 0 0 0 1 NLGN2 chr17:7317982 3'AG 7317982 Downstream 50bp 15144 chr7 148863348 148863348 1 + G T LUSC 148863349 + 148863329 148863369 41 TTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATC TTTACAAGAATATCATGAATGGCAACTACGAGTCTCTCATC < 41bp 0.46841451219065 0.784192745053422 NA NA prediction 0.568385490106844 Functional Gain - ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148863349 chr7:148863348 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15843 0 0 1 0 2 ZNF398 chr7:148863250 3'AG 148863250 Downstream 99bp 15145 chr7 148863348 148863348 1 + G T LUSC 148863349 + 148863329 148863369 41 TTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATC TTTACAAGAATATCATGAATGGCAACTACGAGTCTCTCATC < 41bp 0.46841451219065 0.784192745053422 NA NA prediction 0.568385490106844 Functional Gain - ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148863349 chr7:148863348 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15843 0 0 1 0 2 ZNF398 chr7:148863376 5'GT 148863376 Upstream 29bp 15146 chrX 153171513 153171513 1 + G T LGG 153171514 + 153171494 153171534 41 CGCCCAGCGCAACGTGGAAGGTGGCAGCGGGGTCACTGACT CGCCCAGCGCAACGTGGAATGTGGCAGCGGGGTCACTGACT < 41bp 0.471623174024732 0.784175609580671 NA NA prediction 0.568351219161341 Functional Gain - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153171514 chrX:153171513 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_15845 1 0 0 0 1 AVPR2 chrX:153171473 3'AG 153171473 Downstream 41bp 15147 chr19 19327834 19327834 1 + G T UCEC 19327835 + 19327815 19327855 41 TCTTTGTGGCTGGGGAACAGGGTGAGTTGGTTTGTGGGGAG TCTTTGTGGCTGGGGAACATGGTGAGTTGGTTTGTGGGGAG < 41bp 0.551886188003248 0.836044119069088 NA NA prediction 0.568315862131681 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19327835 chr19:19327834 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_15847 0 0 0 0 1 NCAN chr19:19327756 3'AG 19327756 Downstream 79bp 15148 chr4 187206920 187206920 1 + G T STAD 187206921 + 187206901 187206941 41 TATAAAATGGCAGAAAGCGGGTATGATATTGCCTTGTTGAA TATAAAATGGCAGAAAGCGTGTATGATATTGCCTTGTTGAA < 41bp 0.518732425443274 0.802878911321276 NA NA prediction 0.568292971756003 Functional Gain - F11 ENSG00000088926 CDS Human protein_coding chr4:187206921 chr4:187206920 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_15848 0 0 0 0 1 F11 chr4:187206967 5'GT 187206967 Upstream 48bp 15149 chr16 22291564 22291564 1 + G T TGCT 22291565 + 22291545 22291585 41 ACTGGTACAACACTGCCCTGGAGATGACGGACTGTGATGAG ACTGGTACAACACTGCCCTTGAGATGACGGACTGTGATGAG < 41bp 0.453244017835555 0.784129247693573 NA NA prediction 0.568258495387145 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22291565 chr16:22291564 synonymous SNV . 0 20 hm7G_associated_SNPs_15849 0 0 1 0 1 EEF2K chr16:22291519 3'AG 22291519 Downstream 46bp 15150 chr15 91306272 91306272 1 + G T UCEC 91306273 + 91306253 91306293 41 TTAGTTTTCCTCATACAAAGGAAATGATGAAGATTTTTCAT TTAGTTTTCCTCATACAAATGAAATGATGAAGATTTTTCAT < 41bp 0.5274464847551 0.811565312510999 NA NA prediction 0.568237655511797 Functional Gain - BLM ENSG00000197299 CDS Human protein_coding chr15:91306273 chr15:91306272 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_15850 0 0 1 0 1 BLM chr15:91306196 3'AG 91306196 Downstream 77bp 15151 chr1 231339744 231339744 1 + G T LUAD 231339745 + 231339725 231339765 41 GGAGCTGGACGACGGTGCCGGGGGACAGTTCCGGGTGAGGC GGAGCTGGACGACGGTGCCTGGGGACAGTTCCGGGTGAGGC < 41bp 0.552323275501089 0.836441543601299 NA NA prediction 0.568236536200419 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231339745 chr1:231339744 nonsynonymous SNV 0.444 4 20 hm7G_associated_SNPs_15851 0 0 0 0 1 TRIM67 chr1:231339758 5'GT 231339758 Upstream 15bp 15152 chr1 196964972 196964972 1 + G T LUAD 196964973 + 196964953 196964993 41 TCCTAATTTTATAATAAACGGGCCTAAGAAAATACAATGTG TCCTAATTTTATAATAAACTGGCCTAAGAAAATACAATGTG < 41bp 0.52495215999568 0.809060996228148 NA NA prediction 0.568217672464937 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196964973 chr1:196964972 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_15853 0 0 0 0 1 CFHR5 chr1:196965029 5'GT 196965029 Upstream 58bp 15153 chr4 40351346 40351346 1 + G T HNSC 40351347 + 40351327 40351367 41 CCGGAGAAAAGGTCTCCCTGGGAGTGACCATCCTGTTGGCC CCGGAGAAAAGGTCTCCCTTGGAGTGACCATCCTGTTGGCC < 41bp 0.46687303413062 0.784107697425372 NA NA prediction 0.568215394850743 Functional Gain - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40351347 chr4:40351346 synonymous SNV . 0 20 hm7G_associated_SNPs_15854 0 0 0 0 1 CHRNA9 chr4:40351431 5'GT 40351431 Upstream 86bp 15154 chr1 150054839 150054839 1 + G T SARC 150054840 + 150054820 150054860 41 ACAGTTCAAGAAAATGTCTGGGACTGTTTCAAAGCATGTGA ACAGTTCAAGAAAATGTCTTGGACTGTTTCAAAGCATGTGA < 41bp 0.459119205392456 0.784100831983073 NA NA prediction 0.568201663966146 Functional Gain - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150054840 chr1:150054839 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15855 0 0 1 2 1 VPS45 chr1:150054800 3'AG 150054800 Downstream 40bp 15155 chr10 118100340 118100340 1 + G T LGG 118100341 + 118100321 118100361 41 AGTGAAATTACAAACCATAGGAATATGCTTCTTCAAACCTT AGTGAAATTACAAACCATATGAATATGCTTCTTCAAACCTT < 41bp 0.488138458115211 0.784092447113505 NA NA prediction 0.56818489422701 Functional Gain - CCDC172 ENSG00000182645 CDS Human protein_coding chr10:118100341 chr10:118100340 nonsynonymous SNV 0.277 4 20 hm7G_associated_SNPs_15857 0 0 0 0 2 CCDC172 chr10:118100246 3'AG 118100246 Downstream 95bp 15156 chr10 118100340 118100340 1 + G T LGG 118100341 + 118100321 118100361 41 AGTGAAATTACAAACCATAGGAATATGCTTCTTCAAACCTT AGTGAAATTACAAACCATATGAATATGCTTCTTCAAACCTT < 41bp 0.488138458115211 0.784092447113505 NA NA prediction 0.56818489422701 Functional Gain - CCDC172 ENSG00000182645 CDS Human protein_coding chr10:118100341 chr10:118100340 nonsynonymous SNV 0.277 4 20 hm7G_associated_SNPs_15857 0 0 0 0 2 CCDC172 chr10:118100362 5'GT 118100362 Upstream 23bp 15157 chr1 27672005 27672005 1 + G T UCEC 27672006 + 27671986 27672026 41 GCCTGCGCCAGCTGGAGGAGGGGCGGGTCAGGTAAGGCAGG GCCTGCGCCAGCTGGAGGATGGGCGGGTCAGGTAAGGCAGG < 41bp 0.550609671303683 0.83470176467483 NA NA prediction 0.568184186742295 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27672006 chr1:27672005 nonsynonymous SNV 0.901 3 20 hm7G_associated_SNPs_15858 0 0 1 0 1 SYTL1 chr1:27672016 5'GT 27672016 Upstream 12bp 15158 chr22 38046672 38046672 1 - C A rs142801645 38046671 - 38046651 38046691 41 TGGAGCTGGAGCCGGAGCCGGAGCCGGGGTGGTGGCTGGGG TGGAGCTGGAGCCGGAGCCTGAGCCGGGGTGGTGGCTGGGG < 41bp 0.483635698855025 0.784077406366887 NA NA prediction 0.568154812733773 Functional Gain - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38046671 chr22:38046672 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_15859 0 0 0 0 1 SH3BP1 chr22:38046719 3'AG 38046719 Downstream 48bp 15159 chr12 95660204 95660204 1 + G T LUAD 95660205 + 95660185 95660225 41 TGGTGGATTGTGTCTTCCTGGCTGGTATGGGGAGTGATTCT TGGTGGATTGTGTCTTCCTTGCTGGTATGGGGAGTGATTCT < 41bp 0.540302680273748 0.824378839646709 NA NA prediction 0.568152318745923 Functional Gain - VEZT ENSG00000028203 CDS Human protein_coding chr12:95660205 chr12:95660204 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_15860 0 0 1 0 1 VEZT chr12:95660133 3'AG 95660133 Downstream 72bp 15160 chr5 23522919 23522919 1 + G T ESCA 23522920 + 23522900 23522940 41 AGGCATCTGATCTGCCGCTGGGTCTGCACTTTGGCCCTTAT AGGCATCTGATCTGCCGCTTGGTCTGCACTTTGGCCCTTAT < 41bp 0.566109097167385 0.850183273257418 NA NA prediction 0.568148352180066 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522920 chr5:23522919 synonymous SNV . 0 20 hm7G_associated_SNPs_15861 0 0 0 0 1 PRDM9 chr5:23522994 5'GT 23522994 Upstream 76bp 15161 chr12 109870798 109870798 1 + G T OV 109870799 + 109870779 109870819 41 ACATCGGCTACAAACCCGAGGAATACAAGTTAGGCAAGTAA ACATCGGCTACAAACCCGATGAATACAAGTTAGGCAAGTAA < 41bp 0.561547277184862 0.845611603387136 NA NA prediction 0.568128652404548 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870799 chr12:109870798 nonsynonymous SNV 0.795 1 20 hm7G_associated_SNPs_15862 0 0 0 0 2 MYO1H chr12:109870702 3'AG 109870702 Downstream 97bp 15162 chr12 109870798 109870798 1 + G T OV 109870799 + 109870779 109870819 41 ACATCGGCTACAAACCCGAGGAATACAAGTTAGGCAAGTAA ACATCGGCTACAAACCCGATGAATACAAGTTAGGCAAGTAA < 41bp 0.561547277184862 0.845611603387136 NA NA prediction 0.568128652404548 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870799 chr12:109870798 nonsynonymous SNV 0.795 1 20 hm7G_associated_SNPs_15862 0 0 0 0 2 MYO1H chr12:109870815 5'GT 109870815 Upstream 18bp 15163 chr17 7405315 7405315 1 + G T LUAD 7405316 + 7405296 7405336 41 CTTCATCAAGGATGACTACGGGCCTGAGAGCCGTGGCTTTG CTTCATCAAGGATGACTACTGGCCTGAGAGCCGTGGCTTTG < 41bp 0.569130544281379 0.853183148877262 NA NA prediction 0.568105209191766 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7405316 chr17:7405315 nonsynonymous SNV 0.766 3 20 hm7G_associated_SNPs_15863 0 0 1 0 1 POLR2A chr17:7405219 3'AG 7405219 Downstream 97bp 15164 chr2 242149001 242149001 1 + G T UCEC 242149002 + 242148982 242149022 41 GAGCCCTACTTCCCTGAGAGGAGCCGCGCGCGCCGCATGCT GAGCCCTACTTCCCTGAGATGAGCCGCGCGCGCCGCATGCT < 41bp 0.454847260572007 0.784051911966034 NA NA prediction 0.568103823932067 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242149002 chr2:242149001 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_15864 0 0 0 0 2 ANO7 chr2:242148913 3'AG 242148913 Downstream 89bp 15165 chr2 242149001 242149001 1 + G T UCEC 242149002 + 242148982 242149022 41 GAGCCCTACTTCCCTGAGAGGAGCCGCGCGCGCCGCATGCT GAGCCCTACTTCCCTGAGATGAGCCGCGCGCGCCGCATGCT < 41bp 0.454847260572007 0.784051911966034 NA NA prediction 0.568103823932067 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242149002 chr2:242149001 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_15864 0 0 0 0 2 ANO7 chr2:242149050 5'GT 242149050 Upstream 50bp 15166 chr2 15742725 15742725 1 + G T BLCA 15742726 + 15742706 15742746 41 AGAAGTAAAGGAATGGCATGGGTGTAGAGCTACTAAAGGAT AGAAGTAAAGGAATGGCATTGGTGTAGAGCTACTAAAGGAT < 41bp 0.565050512792703 0.849100131262092 NA NA prediction 0.568099236938778 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15742726 chr2:15742725 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_15865 0 0 1 0 2 DDX1 chr2:15742672 3'AG 15742672 Downstream 54bp 15167 chr2 15742725 15742725 1 + G T BLCA 15742726 + 15742706 15742746 41 AGAAGTAAAGGAATGGCATGGGTGTAGAGCTACTAAAGGAT AGAAGTAAAGGAATGGCATTGGTGTAGAGCTACTAAAGGAT < 41bp 0.565050512792703 0.849100131262092 NA NA prediction 0.568099236938778 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15742726 chr2:15742725 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_15865 0 0 1 0 2 DDX1 chr2:15742755 5'GT 15742755 Upstream 31bp 15168 chr19 57795936 57795936 1 + G T UCEC 57795937 + 57795917 57795957 41 AGGAGTCTGTGACCTTCGAGGATGTGGCTGTGACATTTACC AGGAGTCTGTGACCTTCGATGATGTGGCTGTGACATTTACC < 41bp 0.555486417324034 0.839530332698196 NA NA prediction 0.568087830748324 Functional Gain - ZNF460 ENSG00000197714 CDS Human protein_coding chr19:57795937 chr19:57795936 nonsynonymous SNV 0.746 0 20 hm7G_associated_SNPs_15866 0 0 1 0 1 ZNF460 chr19:57795919 3'AG 57795919 Downstream 18bp 15169 chr14 70171367 70171367 1 + G T SARC 70171368 + 70171348 70171388 41 TCCCCACGCTGTCTATAGTGGCTTCTACTGCCAGCTCCGTG TCCCCACGCTGTCTATAGTTGCTTCTACTGCCAGCTCCGTG < 41bp 0.569531553628916 0.853566393088993 NA NA prediction 0.568069678920154 Functional Gain - SUSD6 ENSG00000100647 CDS Human protein_coding chr14:70171368 chr14:70171367 synonymous SNV . 0 20 hm7G_associated_SNPs_15867 0 0 1 0 2 SUSD6 chr14:70171321 3'AG 70171321 Downstream 47bp 15170 chr14 70171367 70171367 1 + G T SARC 70171368 + 70171348 70171388 41 TCCCCACGCTGTCTATAGTGGCTTCTACTGCCAGCTCCGTG TCCCCACGCTGTCTATAGTTGCTTCTACTGCCAGCTCCGTG < 41bp 0.569531553628916 0.853566393088993 NA NA prediction 0.568069678920154 Functional Gain - SUSD6 ENSG00000100647 CDS Human protein_coding chr14:70171368 chr14:70171367 synonymous SNV . 0 20 hm7G_associated_SNPs_15867 0 0 1 0 2 SUSD6 chr14:70171459 5'GT 70171459 Upstream 93bp 15171 chr15 92987953 92987953 1 + G T BLCA 92987954 + 92987934 92987974 41 ACCCCTCGGTCATCCAGCGGGCCTTTGAGGACTTGGTCAAT ACCCCTCGGTCATCCAGCGTGCCTTTGAGGACTTGGTCAAT < 41bp 0.569700354394681 0.853717119358798 NA NA prediction 0.568033529928234 Functional Gain - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92987954 chr15:92987953 synonymous SNV . 0 20 hm7G_associated_SNPs_15868 0 0 0 0 1 ST8SIA2 chr15:92987866 3'AG 92987866 Downstream 88bp 15172 chr9 77745531 77745531 1 + G T GBM 77745532 + 77745512 77745552 41 AAAGGCACCTCCAAAGGCAGGACTGGACTAATTCCAAGCAA AAAGGCACCTCCAAAGGCATGACTGGACTAATTCCAAGCAA < 41bp 0.552202319973568 0.836209848862233 NA NA prediction 0.56801505777733 Functional Gain - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77745532 chr9:77745531 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15871 0 0 1 0 2 OSTF1 chr9:77745494 3'AG 77745494 Downstream 38bp 15173 chr9 77745531 77745531 1 + G T GBM 77745532 + 77745512 77745552 41 AAAGGCACCTCCAAAGGCAGGACTGGACTAATTCCAAGCAA AAAGGCACCTCCAAAGGCATGACTGGACTAATTCCAAGCAA < 41bp 0.552202319973568 0.836209848862233 NA NA prediction 0.56801505777733 Functional Gain - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77745532 chr9:77745531 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15871 0 0 1 0 2 OSTF1 chr9:77745557 5'GT 77745557 Upstream 27bp 15174 chr10 7762845 7762845 1 + G T CESC 7762846 + 7762826 7762866 41 TGTGGGTTATCGAACCACAGGGACTGAGATTTCTTCATGTT TGTGGGTTATCGAACCACATGGACTGAGATTTCTTCATGTT < 41bp 0.550790416624305 0.834796029256862 NA NA prediction 0.568011225265115 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762846 chr10:7762845 nonsynonymous SNV 0.211 3 20 hm7G_associated_SNPs_15872 0 0 1 0 2 ITIH2 chr10:7762819 3'AG 7762819 Downstream 27bp 15175 chr10 7762845 7762845 1 + G T CESC 7762846 + 7762826 7762866 41 TGTGGGTTATCGAACCACAGGGACTGAGATTTCTTCATGTT TGTGGGTTATCGAACCACATGGACTGAGATTTCTTCATGTT < 41bp 0.550790416624305 0.834796029256862 NA NA prediction 0.568011225265115 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762846 chr10:7762845 nonsynonymous SNV 0.211 3 20 hm7G_associated_SNPs_15872 0 0 1 0 2 ITIH2 chr10:7762926 5'GT 7762926 Upstream 82bp 15176 chr7 36336609 36336609 1 + G T UCEC 36336610 + 36336590 36336630 41 TTCCACTTCCAGGAGAAAAGGATGTCATTATCTTAGGGGAT TTCCACTTCCAGGAGAAAATGATGTCATTATCTTAGGGGAT < 41bp 0.479879659636114 0.784004988851814 NA NA prediction 0.568009977703627 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36336610 chr7:36336609 nonsynonymous SNV 0.871 3 20 hm7G_associated_SNPs_15873 0 0 0 0 1 EEPD1 chr7:36336602 3'AG 36336602 Downstream 8bp 15177 chr22 20128506 20128506 1 + G T LUAD 20128507 + 20128487 20128527 41 GGTCAAGCTTAGTGACAACGGGCTGAAGGCTGGCCTGGGCC GGTCAAGCTTAGTGACAACTGGCTGAAGGCTGGCCTGGGCC < 41bp 0.443260191641276 0.784002116404595 NA NA prediction 0.568004232809189 Functional Gain - ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20128507 chr22:20128506 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15874 0 0 1 0 1 ZDHHC8 chr22:20128535 5'GT 20128535 Upstream 30bp 15178 chr19 53905391 53905391 1 + G T UCEC 53905392 + 53905372 53905412 41 TGCCTGGACCCTGCTCAGAGGACTCTATACAGGGACGTGAT TGCCTGGACCCTGCTCAGATGACTCTATACAGGGACGTGAT < 41bp 0.466043888572656 0.784001378898174 NA NA prediction 0.568002757796349 Functional Gain - ZNF765 ENSG00000196417 CDS Human protein_coding chr19:53905392 chr19:53905391 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_15875 0 0 0 0 1 ZNF765 chr19:53905444 5'GT 53905444 Upstream 54bp 15179 chr13 78208567 78208567 1 + G T UCEC 78208568 + 78208548 78208588 41 GATACTGTTGTGTACACAAGGACATATGTGGAGAATAGGTA GATACTGTTGTGTACACAATGACATATGTGGAGAATAGGTA < 41bp 0.530085275239212 0.814069606259854 NA NA prediction 0.567968662041285 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78208568 chr13:78208567 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_15877 0 0 0 0 2 SCEL chr13:78208514 3'AG 78208514 Downstream 54bp 15180 chr13 78208567 78208567 1 + G T UCEC 78208568 + 78208548 78208588 41 GATACTGTTGTGTACACAAGGACATATGTGGAGAATAGGTA GATACTGTTGTGTACACAATGACATATGTGGAGAATAGGTA < 41bp 0.530085275239212 0.814069606259854 NA NA prediction 0.567968662041285 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78208568 chr13:78208567 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_15877 0 0 0 0 2 SCEL chr13:78208585 5'GT 78208585 Upstream 19bp 15181 chr2 219559278 219559278 1 + G T OV 219559279 + 219559259 219559299 41 CTGTCTATTGGGACAGCTTGGTCAGCAAGGGGTGACCTTTG CTGTCTATTGGGACAGCTTTGTCAGCAAGGGGTGACCTTTG < 41bp 0.562973975183642 0.846936739255191 NA NA prediction 0.567925528143098 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219559279 chr2:219559278 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_15879 0 0 1 0 1 STK36 chr2:219559358 5'GT 219559358 Upstream 81bp 15182 chr16 8722640 8722640 1 + G T COAD 8722641 + 8722621 8722661 41 AGACTCTTGGACAGATTCAGGAGCCAAGGGTGGCAGTCACA AGACTCTTGGACAGATTCATGAGCCAAGGGTGGCAGTCACA < 41bp 0.56439914707937 0.84835571277458 NA NA prediction 0.567913131390419 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8722641 chr16:8722640 stopgain 0.380 0 20 hm7G_associated_SNPs_15881 0 0 1 0 1 METTL22 chr16:8722587 3'AG 8722587 Downstream 54bp 15183 chr19 13007233 13007233 1 + G T LUAD 13007234 + 13007214 13007254 41 CCCTGGTGCATCCAGCCTGGGGGTAAGTGGCAGCCACTTTG CCCTGGTGCATCCAGCCTGTGGGTAAGTGGCAGCCACTTTG < 41bp 0.559993742076455 0.843944431573084 NA NA prediction 0.567901378993258 Functional Gain - GCDH ENSG00000105607 CDS Human protein_coding chr19:13007234 chr19:13007233 nonsynonymous SNV 0.030 3 20 hm7G_associated_SNPs_15882 0 0 1 0 1 GCDH chr19:13007235 5'GT 13007235 Upstream 3bp 15184 chr17 9760870 9760870 1 + G T LUAD 9760871 + 9760851 9760891 41 GAGGCCTGACAATGAGAATGGGTGGATGTCCTACCTGTCAG GAGGCCTGACAATGAGAATTGGTGGATGTCCTACCTGTCAG < 41bp 0.457620154103195 0.78394762270183 NA NA prediction 0.567895245403659 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9760871 chr17:9760870 nonsynonymous SNV 0.506 2 20 hm7G_associated_SNPs_15883 0 0 0 0 1 GLP2R chr17:9760893 5'GT 9760893 Upstream 24bp 15185 chr2 204599520 204599520 1 + G T UCEC 204599521 + 204599501 204599541 41 CTGCAGGTGAGGAGTAAGAGGAGCAGGCTCCTGCACAGTGA CTGCAGGTGAGGAGTAAGATGAGCAGGCTCCTGCACAGTGA < 41bp 0.490707239956631 0.783934965568576 NA NA prediction 0.567869931137151 Functional Gain - CD28 ENSG00000178562 CDS Human protein_coding chr2:204599521 chr2:204599520 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_15884 0 0 0 0 1 CD28 chr2:204599507 3'AG 204599507 Downstream 14bp 15186 chr10 89505670 89505670 1 + G T LIHC 89505671 + 89505651 89505691 41 ATCCCCCAGATGGCTTCATGGCCCCCAAAGCATGGAAGGTC ATCCCCCAGATGGCTTCATTGCCCCCAAAGCATGGAAGGTC < 41bp 0.539011630771728 0.822945481259628 NA NA prediction 0.5678677009758 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89505671 chr10:89505670 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_15885 0 0 1 0 1 PAPSS2 chr10:89505589 3'AG 89505589 Downstream 82bp 15187 chr1 159162393 159162393 1 + G T LUAD 159162394 + 159162374 159162414 41 GAGATAATCGAATTCAGCTGGTTACCTCTACGCCCCACGAG GAGATAATCGAATTCAGCTTGTTACCTCTACGCCCCACGAG < 41bp 0.459757053023329 0.783927578260983 NA NA prediction 0.567855156521966 Functional Gain - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159162394 chr1:159162393 synonymous SNV . 0 20 hm7G_associated_SNPs_15886 0 0 0 0 1 CADM3 chr1:159162368 3'AG 159162368 Downstream 26bp 15188 chr12 99100319 99100319 1 + G T SARC 99100320 + 99100300 99100340 41 GCAGAGGACATTTAAGTTGGGTTCATGGTGTGATGTTTTCT GCAGAGGACATTTAAGTTGTGTTCATGGTGTGATGTTTTCT < 41bp 0.481194958483623 0.783922067862514 NA NA prediction 0.567844135725028 Functional Gain - APAF1 ENSG00000120868 CDS Human protein_coding chr12:99100320 chr12:99100319 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15887 0 0 1 0 1 APAF1 chr12:99100263 3'AG 99100263 Downstream 57bp 15189 chr2 103142788 103142788 1 + G T HNSC 103142789 + 103142769 103142809 41 TCTGCAGGAAGAGACACAAGGGCTGCTGGGTTCTCAGGTAA TCTGCAGGAAGAGACACAATGGCTGCTGGGTTCTCAGGTAA < 41bp 0.471472759813537 0.783914950247994 NA NA prediction 0.567829900495987 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103142789 chr2:103142788 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_15888 0 0 0 0 2 SLC9A4 chr2:103142718 3'AG 103142718 Downstream 71bp 15190 chr2 103142788 103142788 1 + G T HNSC 103142789 + 103142769 103142809 41 TCTGCAGGAAGAGACACAAGGGCTGCTGGGTTCTCAGGTAA TCTGCAGGAAGAGACACAATGGCTGCTGGGTTCTCAGGTAA < 41bp 0.471472759813537 0.783914950247994 NA NA prediction 0.567829900495987 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103142789 chr2:103142788 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_15888 0 0 0 0 2 SLC9A4 chr2:103142805 5'GT 103142805 Upstream 18bp 15191 chr1 46878853 46878853 1 + G T LUSC 46878854 + 46878834 46878874 41 CCCAGATGGAACATTACAGGGGCTACTTTGGGGATATCTGG CCCAGATGGAACATTACAGTGGCTACTTTGGGGATATCTGG < 41bp 0.457049405489115 0.783913819748187 NA NA prediction 0.567827639496375 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46878854 chr1:46878853 nonsynonymous SNV 0.584 1 20 hm7G_associated_SNPs_15889 0 0 0 1 2 FAAH chr1:46878795 3'AG 46878795 Downstream 59bp 15192 chr1 46878853 46878853 1 + G T LUSC 46878854 + 46878834 46878874 41 CCCAGATGGAACATTACAGGGGCTACTTTGGGGATATCTGG CCCAGATGGAACATTACAGTGGCTACTTTGGGGATATCTGG < 41bp 0.457049405489115 0.783913819748187 NA NA prediction 0.567827639496375 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46878854 chr1:46878853 nonsynonymous SNV 0.584 1 20 hm7G_associated_SNPs_15889 0 0 0 1 2 FAAH chr1:46878892 5'GT 46878892 Upstream 40bp 15193 chr21 27136985 27136985 1 + G T LUSC 27136986 + 27136966 27137006 41 CTCGAGACTGCATTTCTTGGGTTGGTGATGAAGGTGAATTT CTCGAGACTGCATTTCTTGTGTTGGTGATGAAGGTGAATTT < 41bp 0.490495509860771 0.783905573588386 NA NA prediction 0.567811147176772 Functional Gain - GABPA ENSG00000154727 CDS Human protein_coding chr21:27136986 chr21:27136985 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15891 0 0 1 0 1 GABPA chr21:27136906 3'AG 27136906 Downstream 80bp 15194 chr3 140409854 140409854 1 + G T HNSC 140409855 + 140409835 140409875 41 ACGTGGACTCTTTTGAGATGGAATTCTATGAAGTCATTACT ACGTGGACTCTTTTGAGATTGAATTCTATGAAGTCATTACT < 41bp 0.46943408705559 0.78388768785562 NA NA prediction 0.567775375711241 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140409855 chr3:140409854 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_15893 0 0 0 0 1 TRIM42 chr3:140409810 3'AG 140409810 Downstream 45bp 15195 chr2 182386949 182386949 1 + G T LUAD 182386950 + 182386930 182386970 41 TAAAACATATCTTGCTGTTGGGAGTATGAAGACATTGATGT TAAAACATATCTTGCTGTTTGGAGTATGAAGACATTGATGT < 41bp 0.528122579685146 0.81200824555904 NA NA prediction 0.567771331747787 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182386950 chr2:182386949 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_15894 0 0 1 0 1 ITGA4 chr2:182386918 3'AG 182386918 Downstream 32bp 15196 chr4 70156378 70156378 1 + G T LUAD 70156379 + 70156359 70156399 41 CTATGAGGCAATCTACCATGGGATCCCTATGGTAGGCATTC CTATGAGGCAATCTACCATTGGATCCCTATGGTAGGCATTC < 41bp 0.551325762384355 0.835204255921126 NA NA prediction 0.567756987073542 Functional Gain - UGT2B28 ENSG00000135226 CDS Human protein_coding chr4:70156379 chr4:70156378 nonsynonymous SNV 0.305 4 20 hm7G_associated_SNPs_15896 0 0 0 0 1 UGT2B28 chr4:70156310 3'AG 70156310 Downstream 69bp 15197 chr8 124138801 124138801 1 + G T UCEC 124138802 + 124138782 124138822 41 CAGAAGTGCTGACAAGAGAGGAGTGGCTGAAATTGTTCGAT CAGAAGTGCTGACAAGAGATGAGTGGCTGAAATTGTTCGAT < 41bp 0.539104542945637 0.822974494419364 NA NA prediction 0.567739902947454 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124138802 chr8:124138801 nonsynonymous SNV 0.953 1 20 hm7G_associated_SNPs_15899 0 0 1 1 1 TBC1D31 chr8:124138748 3'AG 124138748 Downstream 54bp 15198 chr15 73994904 73994904 1 + G T ACC 73994905 + 73994885 73994925 41 CGTGAGCATCCGGGATTTCGGCAGCGCTGCCGTCAGCCTGC CGTGAGCATCCGGGATTTCTGCAGCGCTGCCGTCAGCCTGC < 41bp 0.453309808624705 0.783863576318898 NA NA prediction 0.567727152637796 Functional Gain - CD276 ENSG00000103855 CDS Human protein_coding chr15:73994905 chr15:73994904 nonsynonymous SNV 0.339 2 20 hm7G_associated_SNPs_15902 0 0 0 0 1 CD276 chr15:73994934 5'GT 73994934 Upstream 31bp 15199 chr19 12738563 12738563 1 + G T UCEC 12738564 + 12738544 12738584 41 GGGAGAGAGACTCTGTGAAGGTAAAGAAGGTAGTCAATGTG GGGAGAGAGACTCTGTGAATGTAAAGAAGGTAGTCAATGTG < 41bp 0.492177531836843 0.783841503402873 NA NA prediction 0.567683006805745 Functional Gain - ZNF791 ENSG00000173875 CDS Human protein_coding chr19:12738564 chr19:12738563 nonsynonymous SNV 0.916 0 20 hm7G_associated_SNPs_15904 0 0 1 0 1 ZNF791 chr19:12738535 3'AG 12738535 Downstream 29bp 15200 chr19 58111475 58111475 1 + G T LUAD 58111476 + 58111456 58111496 41 GCTCCGCCCAGAGTCCGATGGCGGCGGCACTGAGGGCCCCG GCTCCGCCCAGAGTCCGATTGCGGCGGCACTGAGGGCCCCG < 41bp 0.540054627123102 0.823886211548855 NA NA prediction 0.567663168851507 Functional Gain - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58111476 chr19:58111475 nonsynonymous SNV 0.326 0 20 hm7G_associated_SNPs_15905 0 0 0 0 1 ZNF530 chr19:58111502 5'GT 58111502 Upstream 28bp 15201 chr19 45528909 45528909 1 + G T UCEC 45528910 + 45528890 45528930 41 GTAGACATGAATGTGGTGAGGATCTGCTTCCAGGCCTCATA GTAGACATGAATGTGGTGATGATCTGCTTCCAGGCCTCATA < 41bp 0.451181375066478 0.783805889410491 NA NA prediction 0.567611778820983 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45528910 chr19:45528909 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_15909 0 0 1 0 1 RELB chr19:45528864 3'AG 45528864 Downstream 46bp 15202 chr12 57993199 57993199 1 + G T LUSC 57993200 + 57993180 57993220 41 CAGGGTTCCCTAGTGTCCCGGGAAGCCAGCGATAAGGAAAA CAGGGTTCCCTAGTGTCCCTGGAAGCCAGCGATAAGGAAAA < 41bp 0.563275550123589 0.847062897655959 NA NA prediction 0.567574695064739 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57993200 chr12:57993199 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15912 0 0 1 0 1 PIP4K2C chr12:57993221 5'GT 57993221 Upstream 23bp 15203 chr16 555562 555562 1 + G T THCA 555563 + 555543 555583 41 GTGTGCTGGAGCTGGAAAAGGACACGGCAGCCACCGGTGAG GTGTGCTGGAGCTGGAAAATGACACGGCAGCCACCGGTGAG < 41bp 0.571434660920648 0.855219776202643 NA NA prediction 0.56757023056399 Functional Gain - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:555563 chr16:555562 nonsynonymous SNV 0.980 2 20 hm7G_associated_SNPs_15914 0 0 1 0 2 RAB11FIP3 chr16:555524 3'AG 555524 Downstream 39bp 15204 chr16 555562 555562 1 + G T THCA 555563 + 555543 555583 41 GTGTGCTGGAGCTGGAAAAGGACACGGCAGCCACCGGTGAG GTGTGCTGGAGCTGGAAAATGACACGGCAGCCACCGGTGAG < 41bp 0.571434660920648 0.855219776202643 NA NA prediction 0.56757023056399 Functional Gain - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:555563 chr16:555562 nonsynonymous SNV 0.980 2 20 hm7G_associated_SNPs_15914 0 0 1 0 2 RAB11FIP3 chr16:555627 5'GT 555627 Upstream 66bp 15205 chr6 26093121 26093121 1 + G T CESC 26093122 + 26093102 26093142 41 CCTTGGCTGTACCCCCTGGGGAAGAGCAGAGATATACGTGC CCTTGGCTGTACCCCCTGGTGAAGAGCAGAGATATACGTGC < 41bp 0.46327837052783 0.783781290868158 NA NA prediction 0.567562581736317 Functional Gain - HFE ENSG00000010704 CDS Human protein_coding chr6:26093122 chr6:26093121 synonymous SNV . 0 20 hm7G_associated_SNPs_15916 0 0 1 0 1 HFE chr6:26093188 5'GT 26093188 Upstream 68bp 15206 chr11 73620586 73620586 1 + G T LUAD 73620587 + 73620567 73620607 41 CTTCTATCAATGGAGTGGCGGTGGGTGCTGCTGACAACTCC CTTCTATCAATGGAGTGGCTGTGGGTGCTGCTGACAACTCC < 41bp 0.550023836255407 0.833799925709628 NA NA prediction 0.567552178908442 Functional Gain - PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73620587 chr11:73620586 synonymous SNV . 0 20 hm7G_associated_SNPs_15917 0 0 1 0 1 PAAF1 chr11:73620638 5'GT 73620638 Upstream 53bp 15207 chr13 26975642 26975642 1 + G T LUAD 26975643 + 26975623 26975663 41 GGGCAATAACCACACTAATGGAACTGGCCACCCAGGGAATC GGGCAATAACCACACTAATTGAACTGGCCACCCAGGGAATC < 41bp 0.474029299677603 0.783765160395462 NA NA prediction 0.567530320790923 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26975643 chr13:26975642 stopgain 0.999 1 20 hm7G_associated_SNPs_15918 0 0 1 0 2 CDK8 chr13:26975603 3'AG 26975603 Downstream 40bp 15208 chr13 26975642 26975642 1 + G T LUAD 26975643 + 26975623 26975663 41 GGGCAATAACCACACTAATGGAACTGGCCACCCAGGGAATC GGGCAATAACCACACTAATTGAACTGGCCACCCAGGGAATC < 41bp 0.474029299677603 0.783765160395462 NA NA prediction 0.567530320790923 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26975643 chr13:26975642 stopgain 0.999 1 20 hm7G_associated_SNPs_15918 0 0 1 0 2 CDK8 chr13:26975606 3'AG 26975606 Downstream 37bp 15209 chr6 26459752 26459752 1 + G T UCEC 26459753 + 26459733 26459773 41 CTGATCCCATCTTGGCCACGGTTGGAGAAAACACTACGTTA CTGATCCCATCTTGGCCACTGTTGGAGAAAACACTACGTTA < 41bp 0.463742654895291 0.783759767256343 NA NA prediction 0.567519534512686 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26459753 chr6:26459752 synonymous SNV . 0 20 hm7G_associated_SNPs_15919 0 0 1 0 1 BTN2A1 chr6:26459709 3'AG 26459709 Downstream 44bp 15210 chr4 166405732 166405732 1 + G T LUAD 166405733 + 166405713 166405753 41 AGATGGAACCACCAACGGTGGTGCTTGGTACAGCGTACCTG AGATGGAACCACCAACGGTTGTGCTTGGTACAGCGTACCTG < 41bp 0.465530361798545 0.783747896581537 NA NA prediction 0.567495793163074 Functional Gain - CPE ENSG00000109472 CDS Human protein_coding chr4:166405733 chr4:166405732 nonsynonymous SNV 0.947 3 20 hm7G_associated_SNPs_15920 0 0 1 0 1 CPE chr4:166405756 5'GT 166405756 Upstream 25bp 15211 chrX 46322677 46322677 1 + G T UCEC 46322678 + 46322658 46322698 41 GATCTTCAGGTTGGGACCAGGTGAAGAGTCCTGGATGGCAG GATCTTCAGGTTGGGACCATGTGAAGAGTCCTGGATGGCAG < 41bp 0.481355709371969 0.783737128022729 NA NA prediction 0.567474256045458 Functional Gain - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322678 chrX:46322677 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_15921 0 0 1 0 2 KRBOX4 chrX:46322728 5'GT 46322728 Upstream 52bp 15212 chrX 46322677 46322677 1 + G T UCEC 46322678 + 46322658 46322698 41 GATCTTCAGGTTGGGACCAGGTGAAGAGTCCTGGATGGCAG GATCTTCAGGTTGGGACCATGTGAAGAGTCCTGGATGGCAG < 41bp 0.481355709371969 0.783737128022729 NA NA prediction 0.567474256045458 Functional Gain - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322678 chrX:46322677 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_15921 0 0 1 0 2 KRBOX4 chrX:46322743 5'GT 46322743 Upstream 67bp 15213 chr17 9792712 9792712 1 + G T LUSC 9792713 + 9792693 9792733 41 GCTGAGCTGCGGAAATACTGGGTCCGCTTCTTGCTAGCCCG GCTGAGCTGCGGAAATACTTGGTCCGCTTCTTGCTAGCCCG < 41bp 0.55989845175172 0.843630936024798 NA NA prediction 0.567464968546155 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9792713 chr17:9792712 nonsynonymous SNV 0.795 3 20 hm7G_associated_SNPs_15922 0 0 0 0 1 GLP2R chr17:9792687 3'AG 9792687 Downstream 26bp 15214 chr17 73727036 73727036 1 + G T PAAD 73727037 + 73727017 73727057 41 TCGTGGAGCTGCTGGAGGAGGCCTTCAATGTGAGGGCAGCT TCGTGGAGCTGCTGGAGGATGCCTTCAATGTGAGGGCAGCT < 41bp 0.56649960921208 0.850225011151879 NA NA prediction 0.5674508038796 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73727037 chr17:73727036 nonsynonymous SNV 0.973 2 20 hm7G_associated_SNPs_15923 0 0 0 0 2 ITGB4 chr17:73726956 3'AG 73726956 Downstream 81bp 15215 chr17 73727036 73727036 1 + G T PAAD 73727037 + 73727017 73727057 41 TCGTGGAGCTGCTGGAGGAGGCCTTCAATGTGAGGGCAGCT TCGTGGAGCTGCTGGAGGATGCCTTCAATGTGAGGGCAGCT < 41bp 0.56649960921208 0.850225011151879 NA NA prediction 0.5674508038796 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73727037 chr17:73727036 nonsynonymous SNV 0.973 2 20 hm7G_associated_SNPs_15923 0 0 0 0 2 ITGB4 chr17:73727045 5'GT 73727045 Upstream 10bp 15216 chr12 9020635 9020635 1 + G T UCEC 9020636 + 9020616 9020656 41 CGTTGGAGGCCTCAGGCCAGGGCTGTGTCTATGTGCAGGTA CGTTGGAGGCCTCAGGCCATGGCTGTGTCTATGTGCAGGTA < 41bp 0.459937783844326 0.783719845033832 NA NA prediction 0.567439690067664 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9020636 chr12:9020635 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_15924 0 0 0 1 1 A2ML1 chr12:9020653 5'GT 9020653 Upstream 19bp 15217 chr7 140374437 140374437 1 + G T UCEC 140374438 + 140374418 140374458 41 ACCCTGGCCTGCTCGCTCAGGTGCATATGGACCTGCTGCTG ACCCTGGCCTGCTCGCTCATGTGCATATGGACCTGCTGCTG < 41bp 0.459133905506467 0.783717769853935 NA NA prediction 0.56743553970787 Functional Gain - ADCK2 ENSG00000133597 CDS Human protein_coding chr7:140374438 chr7:140374437 nonsynonymous SNV 0.927 1 20 hm7G_associated_SNPs_15925 0 0 0 0 1 ADCK2 chr7:140374411 3'AG 140374411 Downstream 27bp 15218 chr19 55178180 55178180 1 + G T UCEC 55178181 + 55178161 55178201 41 GAACACACAGCCTGAGGACGGGGTGGAAATGGACACTCGGG GAACACACAGCCTGAGGACTGGGTGGAAATGGACACTCGGG < 41bp 0.549296204344036 0.833012253317481 NA NA prediction 0.567432097946889 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55178181 chr19:55178180 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_15926 0 0 0 0 3 LILRB4 chr19:55178145 3'AG 55178145 Downstream 36bp 15219 chr19 55178180 55178180 1 + G T UCEC 55178181 + 55178161 55178201 41 GAACACACAGCCTGAGGACGGGGTGGAAATGGACACTCGGG GAACACACAGCCTGAGGACTGGGTGGAAATGGACACTCGGG < 41bp 0.549296204344036 0.833012253317481 NA NA prediction 0.567432097946889 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55178181 chr19:55178180 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_15926 0 0 0 0 3 LILRB4 chr19:55178148 3'AG 55178148 Downstream 33bp 15220 chr19 55178180 55178180 1 + G T UCEC 55178181 + 55178161 55178201 41 GAACACACAGCCTGAGGACGGGGTGGAAATGGACACTCGGG GAACACACAGCCTGAGGACTGGGTGGAAATGGACACTCGGG < 41bp 0.549296204344036 0.833012253317481 NA NA prediction 0.567432097946889 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55178181 chr19:55178180 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_15926 0 0 0 0 3 LILRB4 chr19:55178200 5'GT 55178200 Upstream 21bp 15221 chr17 35825566 35825566 1 + G T UCEC 35825567 + 35825547 35825587 41 GGTATCCCAAGGAGGTCCAGGACCTGTATGAAACAATGAGG GGTATCCCAAGGAGGTCCATGACCTGTATGAAACAATGAGG < 41bp 0.45207016735229 0.783698097901924 NA NA prediction 0.567396195803849 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35825567 chr17:35825566 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15928 0 0 1 0 2 TADA2A chr17:35825535 3'AG 35825535 Downstream 32bp 15222 chr17 35825566 35825566 1 + G T UCEC 35825567 + 35825547 35825587 41 GGTATCCCAAGGAGGTCCAGGACCTGTATGAAACAATGAGG GGTATCCCAAGGAGGTCCATGACCTGTATGAAACAATGAGG < 41bp 0.45207016735229 0.783698097901924 NA NA prediction 0.567396195803849 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35825567 chr17:35825566 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_15928 0 0 1 0 2 TADA2A chr17:35825645 5'GT 35825645 Upstream 80bp 15223 chr15 40566381 40566381 1 + G T UCEC 40566382 + 40566362 40566402 41 GCATCATGGTGATTGAGATGGTAGATGGGGAGCCACCGTAC GCATCATGGTGATTGAGATTGTAGATGGGGAGCCACCGTAC < 41bp 0.469633976939396 0.783679330062589 NA NA prediction 0.567358660125178 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40566382 chr15:40566381 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15929 0 0 0 0 2 BUB1B-PAK6;PAK6 chr15:40566343 3'AG 40566343 Downstream 39bp 15224 chr15 40566381 40566381 1 + G T UCEC 40566382 + 40566362 40566402 41 GCATCATGGTGATTGAGATGGTAGATGGGGAGCCACCGTAC GCATCATGGTGATTGAGATTGTAGATGGGGAGCCACCGTAC < 41bp 0.469633976939396 0.783679330062589 NA NA prediction 0.567358660125178 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40566382 chr15:40566381 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15929 0 0 0 0 2 BUB1B-PAK6;PAK6 chr15:40566477 5'GT 40566477 Upstream 97bp 15225 chr4 187115763 187115763 1 + G T CESC 187115764 + 187115744 187115784 41 TTTATAATGCAGAAAATGTGGAGGTGGGTACATGTGAATAT TTTATAATGCAGAAAATGTTGAGGTGGGTACATGTGAATAT < 41bp 0.480608986640541 0.783678841671787 NA NA prediction 0.567357683343574 Functional Gain - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187115764 chr4:187115763 synonymous SNV . 0 20 hm7G_associated_SNPs_15930 0 0 0 0 1 CYP4V2 chr4:187115766 5'GT 187115766 Upstream 4bp 15226 chr1 156841476 156841476 1 + G T ACC 156841477 + 156841457 156841497 41 GTCACCAGTGACCTCAACAGGAAGAACGTGACGTGCTGGGC GTCACCAGTGACCTCAACATGAAGAACGTGACGTGCTGGGC < 41bp 0.568621091807919 0.852295571539628 NA NA prediction 0.567348959463417 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841477 chr1:156841476 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_15931 0 0 0 0 2 NTRK1 chr1:156841415 3'AG 156841415 Downstream 62bp 15227 chr1 156841476 156841476 1 + G T ACC 156841477 + 156841457 156841497 41 GTCACCAGTGACCTCAACAGGAAGAACGTGACGTGCTGGGC GTCACCAGTGACCTCAACATGAAGAACGTGACGTGCTGGGC < 41bp 0.568621091807919 0.852295571539628 NA NA prediction 0.567348959463417 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841477 chr1:156841476 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_15931 0 0 0 0 2 NTRK1 chr1:156841547 5'GT 156841547 Upstream 72bp 15228 chr10 72496510 72496510 1 + G T KIRC 72496511 + 72496491 72496531 41 ACTTCTGCAAGACCAAGAAGGGGCCCCCGCTGGATGGGACT ACTTCTGCAAGACCAAGAATGGGCCCCCGCTGGATGGGACT < 41bp 0.43555832836167 0.783669330456324 NA NA prediction 0.567338660912648 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72496511 chr10:72496510 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15933 0 0 1 0 2 ADAMTS14 chr10:72496436 3'AG 72496436 Downstream 75bp 15229 chr10 72496510 72496510 1 + G T KIRC 72496511 + 72496491 72496531 41 ACTTCTGCAAGACCAAGAAGGGGCCCCCGCTGGATGGGACT ACTTCTGCAAGACCAAGAATGGGCCCCCGCTGGATGGGACT < 41bp 0.43555832836167 0.783669330456324 NA NA prediction 0.567338660912648 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72496511 chr10:72496510 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15933 0 0 1 0 2 ADAMTS14 chr10:72496549 5'GT 72496549 Upstream 40bp 15230 chr5 79797673 79797673 1 + G T THCA 79797674 + 79797654 79797694 41 CCAGATTACAGCAGAAGACGGTGCTGAGATCACCTGGTATC CCAGATTACAGCAGAAGACTGTGCTGAGATCACCTGGTATC < 41bp 0.533691528350488 0.817337231402858 NA NA prediction 0.56729140610474 Functional Gain - FAM151B ENSG00000152380 CDS Human protein_coding chr5:79797674 chr5:79797673 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_15935 0 0 0 1 2 FAM151B chr5:79797611 3'AG 79797611 Downstream 63bp 15231 chr5 79797673 79797673 1 + G T THCA 79797674 + 79797654 79797694 41 CCAGATTACAGCAGAAGACGGTGCTGAGATCACCTGGTATC CCAGATTACAGCAGAAGACTGTGCTGAGATCACCTGGTATC < 41bp 0.533691528350488 0.817337231402858 NA NA prediction 0.56729140610474 Functional Gain - FAM151B ENSG00000152380 CDS Human protein_coding chr5:79797674 chr5:79797673 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_15935 0 0 0 1 2 FAM151B chr5:79797736 5'GT 79797736 Upstream 64bp 15232 chr3 52021616 52021616 1 + G T COAD 52021617 + 52021597 52021637 41 GGTGCCAGGCAGCTGGCGAGGGGGTCACCCTAGAGTTTGCT GGTGCCAGGCAGCTGGCGATGGGGTCACCCTAGAGTTTGCT < 41bp 0.457818159074274 0.783626406106642 NA NA prediction 0.567252812213284 Functional Gain - ABHD14A-ACY1;ACY1 ENSG00000114786;ENSG00000243989 CDS Human other chr3:52021617 chr3:52021616 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_15938 0 0 1 0 2 ABHD14A-ACY1;ACY1 chr3:52021572 3'AG 52021572 Downstream 45bp 15233 chr3 52021616 52021616 1 + G T COAD 52021617 + 52021597 52021637 41 GGTGCCAGGCAGCTGGCGAGGGGGTCACCCTAGAGTTTGCT GGTGCCAGGCAGCTGGCGATGGGGTCACCCTAGAGTTTGCT < 41bp 0.457818159074274 0.783626406106642 NA NA prediction 0.567252812213284 Functional Gain - ABHD14A-ACY1;ACY1 ENSG00000114786;ENSG00000243989 CDS Human other chr3:52021617 chr3:52021616 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_15938 0 0 1 0 2 ABHD14A-ACY1;ACY1 chr3:52021640 5'GT 52021640 Upstream 25bp 15234 chr2 219677361 219677361 1 + G T THCA 219677362 + 219677342 219677382 41 GACCTTCGTCAGATCCATCGGGTTAATGTTCCAGAACTCAC GACCTTCGTCAGATCCATCTGGTTAATGTTCCAGAACTCAC < 41bp 0.570914674403566 0.854535726821069 NA NA prediction 0.567242104835006 Functional Gain - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677362 chr2:219677361 nonsynonymous SNV 0.246 3 20 hm7G_associated_SNPs_15939 0 0 0 0 1 CYP27A1 chr2:219677275 3'AG 219677275 Downstream 87bp 15235 chr12 81101981 81101981 1 + G T LUSC 81101982 + 81101962 81102002 41 AGAAGATGCAGGAGCTGGGGGTGGACCCCTTCAGCTACAGA AGAAGATGCAGGAGCTGGGTGTGGACCCCTTCAGCTACAGA < 41bp 0.482563362722115 0.783618681652426 NA NA prediction 0.567237363304853 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81101982 chr12:81101981 synonymous SNV . 0 20 hm7G_associated_SNPs_15940 0 0 0 0 1 MYF6 chr12:81102017 5'GT 81102017 Upstream 37bp 15236 chrX 69649360 69649360 1 + G T LUAD 69649361 + 69649341 69649381 41 AGAGGCGACCCTTCTGGGGGGCCAAACCGCTGGCAGGCCCT AGAGGCGACCCTTCTGGGGTGCCAAACCGCTGGCAGGCCCT < 41bp 0.570918414080779 0.85452867037174 NA NA prediction 0.56722051258192 Functional Gain - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69649361 chrX:69649360 synonymous SNV . 0 20 hm7G_associated_SNPs_15942 0 0 0 0 1 GDPD2 chrX:69649343 3'AG 69649343 Downstream 18bp 15237 chr11 64021900 64021900 1 + G T LUAD 64021901 + 64021881 64021921 41 CCTCAGGAGACCTCCAGTCGGAACCTGGTGACCCTGCGTGT CCTCAGGAGACCTCCAGTCTGAACCTGGTGACCCTGCGTGT < 41bp 0.455532564945442 0.783610179393603 NA NA prediction 0.567220358787205 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64021901 chr11:64021900 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_15943 0 0 1 0 2 PLCB3 chr11:64021887 3'AG 64021887 Downstream 14bp 15238 chr11 64021900 64021900 1 + G T LUAD 64021901 + 64021881 64021921 41 CCTCAGGAGACCTCCAGTCGGAACCTGGTGACCCTGCGTGT CCTCAGGAGACCTCCAGTCTGAACCTGGTGACCCTGCGTGT < 41bp 0.455532564945442 0.783610179393603 NA NA prediction 0.567220358787205 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64021901 chr11:64021900 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_15943 0 0 1 0 2 PLCB3 chr11:64021964 5'GT 64021964 Upstream 65bp 15239 chr3 45764367 45764367 1 + G T UCEC 45764368 + 45764348 45764388 41 TCTTTTCTTTTAGACTCGAGGATCAATACCTGTTTTCTGGT TCTTTTCTTTTAGACTCGATGATCAATACCTGTTTTCTGGT < 41bp 0.531599557741216 0.815186462012877 NA NA prediction 0.567173808543322 Functional Gain - SACM1L ENSG00000211456 CDS Human protein_coding chr3:45764368 chr3:45764367 stopgain 0.998 1 20 hm7G_associated_SNPs_15947 0 0 0 0 2 SACM1L chr3:45764361 3'AG 45764361 Downstream 7bp 15240 chr3 45764367 45764367 1 + G T UCEC 45764368 + 45764348 45764388 41 TCTTTTCTTTTAGACTCGAGGATCAATACCTGTTTTCTGGT TCTTTTCTTTTAGACTCGATGATCAATACCTGTTTTCTGGT < 41bp 0.531599557741216 0.815186462012877 NA NA prediction 0.567173808543322 Functional Gain - SACM1L ENSG00000211456 CDS Human protein_coding chr3:45764368 chr3:45764367 stopgain 0.998 1 20 hm7G_associated_SNPs_15947 0 0 0 0 2 SACM1L chr3:45764447 5'GT 45764447 Upstream 81bp 15241 chr1 175092777 175092777 1 + G T LUSC 175092778 + 175092758 175092798 41 GGGCCCAGGAGAGCAAGAAGGCTGACACCAAGGCCCAGACA GGGCCCAGGAGAGCAAGAATGCTGACACCAAGGCCCAGACA < 41bp 0.564056316734511 0.847641692784995 NA NA prediction 0.567170752100967 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175092778 chr1:175092777 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_15948 0 0 0 0 1 TNN chr1:175092799 5'GT 175092799 Upstream 23bp 15242 chr2 63824576 63824576 1 + G T UCEC 63824577 + 63824557 63824597 41 ACGTTGCCTTCAAAGACCTGGATGTGGCCATTCTTGTGGGC ACGTTGCCTTCAAAGACCTTGATGTGGCCATTCTTGTGGGC < 41bp 0.569265880319257 0.852838213812959 NA NA prediction 0.567144666987404 Functional Gain - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63824577 chr2:63824576 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_15949 0 0 1 0 1 MDH1 chr2:63824533 3'AG 63824533 Downstream 44bp 15243 chr7 128851580 128851580 1 + G T UCEC 128851581 + 128851561 128851601 41 GAGGAGCCATACTGCCCCAGGATATTTCTGTCACCCCTGTG GAGGAGCCATACTGCCCCATGATATTTCTGTCACCCCTGTG < 41bp 0.445656585040062 0.783570715629873 NA NA prediction 0.567141431259745 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128851581 chr7:128851580 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_15950 0 0 1 0 1 SMO chr7:128851611 5'GT 128851611 Upstream 32bp 15244 chr10 82122230 82122230 1 + G T LUAD 82122231 + 82122211 82122251 41 CTACCTGAAGAGGTGCTTTGGAAATTGCCTGGCCCAGGCAC CTACCTGAAGAGGTGCTTTTGAAATTGCCTGGCCCAGGCAC < 41bp 0.568091737441102 0.851659033228897 NA NA prediction 0.567134591575589 Functional Gain - DYDC2 ENSG00000133665 CDS Human protein_coding chr10:82122231 chr10:82122230 stopgain 0.991 1 20 hm7G_associated_SNPs_15951 0 0 0 0 1 DYDC2 chr10:82122191 3'AG 82122191 Downstream 40bp 15245 chr1 236902645 236902645 1 + G T LUAD 236902646 + 236902626 236902666 41 ATCCCCTGGCTGGAGAACCGGACTCCCGAGAAGACCATGCA ATCCCCTGGCTGGAGAACCTGACTCCCGAGAAGACCATGCA < 41bp 0.559581023260141 0.843148107291665 NA NA prediction 0.567134168063048 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236902646 chr1:236902645 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_15952 0 0 1 0 1 ACTN2 chr1:236902602 3'AG 236902602 Downstream 44bp 15246 chr5 131719977 131719977 1 + G T STAD 131719978 + 131719958 131719998 41 GCCAGATCTCCAACTATGTGGCAGCATTTGTCCTGGGTATG GCCAGATCTCCAACTATGTTGCAGCATTTGTCCTGGGTATG < 41bp 0.450402623854655 0.783551023280309 NA NA prediction 0.567102046560618 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131719978 chr5:131719977 synonymous SNV . 0 20 hm7G_associated_SNPs_15954 0 0 0 0 1 SLC22A5 chr5:131719993 5'GT 131719993 Upstream 17bp 15247 chr3 44700245 44700245 1 + G T UCEC 44700246 + 44700226 44700266 41 CAAAAACTGAGATATGTGAGGAAGCTGAAAAACCCCTCATC CAAAAACTGAGATATGTGATGAAGCTGAAAAACCCCTCATC < 41bp 0.509329664911107 0.792844543490961 NA NA prediction 0.567029757159708 Functional Gain - ZNF35 ENSG00000169981 CDS Human protein_coding chr3:44700246 chr3:44700245 nonsynonymous SNV 0.949 0 20 hm7G_associated_SNPs_15957 0 0 1 0 1 ZNF35 chr3:44700193 3'AG 44700193 Downstream 53bp 15248 chr20 57782025 57782025 1 + G T LUSC 57782026 + 57782006 57782046 41 AGACTTCGCACACCAACCTGGGTGCGAAGAAGAAGCCGCCA AGACTTCGCACACCAACCTTGGTGCGAAGAAGAAGCCGCCA < 41bp 0.567820797295495 0.851315998861319 NA NA prediction 0.566990403131648 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57782026 chr20:57782025 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_15958 0 0 0 0 2 ZNF831 chr20:57781960 3'AG 57781960 Downstream 66bp 15249 chr20 57782025 57782025 1 + G T LUSC 57782026 + 57782006 57782046 41 AGACTTCGCACACCAACCTGGGTGCGAAGAAGAAGCCGCCA AGACTTCGCACACCAACCTTGGTGCGAAGAAGAAGCCGCCA < 41bp 0.567820797295495 0.851315998861319 NA NA prediction 0.566990403131648 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57782026 chr20:57782025 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_15958 0 0 0 0 2 ZNF831 chr20:57782111 5'GT 57782111 Upstream 87bp 15250 chr16 31092997 31092997 1 + G T COAD 31092998 + 31092978 31093018 41 AGCACCAGCAGCAGCACCAGGAGGAGTGGACGGTGGCCGGC AGCACCAGCAGCAGCACCATGAGGAGTGGACGGTGGCCGGC < 41bp 0.541531558181977 0.825024258333393 NA NA prediction 0.566985400302832 Functional Gain - ZNF646 ENSG00000167395 CDS Human protein_coding chr16:31092998 chr16:31092997 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_15959 0 0 0 0 1 ZNF646 chr16:31093022 5'GT 31093022 Upstream 26bp 15251 chr3 100374024 100374024 1 + G T LUAD 100374025 + 100374005 100374045 41 TCATCTCATTAATTGGATGGGGTAAGTGTTTGCATCTCCCC TCATCTCATTAATTGGATGTGGTAAGTGTTTGCATCTCCCC < 41bp 0.486613631968164 0.783491630610719 NA NA prediction 0.566983261221438 Functional Gain - ADGRG7 ENSG00000144820 CDS Human protein_coding chr3:100374025 chr3:100374024 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15960 0 0 0 0 1 ADGRG7 chr3:100374025 5'GT 100374025 Upstream 2bp 15252 chr17 12887900 12887900 1 + G T UCEC 12887901 + 12887881 12887921 41 TCCCCTTTGGCCAGCCGGGGGCTATGGCAGACCAGTCCGCT TCCCCTTTGGCCAGCCGGGTGCTATGGCAGACCAGTCCGCT < 41bp 0.456923644441911 0.783490328009729 NA NA prediction 0.566980656019458 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12887901 chr17:12887900 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_15961 0 0 0 0 1 ARHGAP44 chr17:12887848 3'AG 12887848 Downstream 53bp 15253 chr3 159711532 159711532 1 + G T LIHC 159711533 + 159711513 159711553 41 AAGACTTGAAGATGTACCAGGTGGAGTTCAAGACCATGAAT AAGACTTGAAGATGTACCATGTGGAGTTCAAGACCATGAAT < 41bp 0.479789130912523 0.783487121248011 NA NA prediction 0.566974242496021 Functional Gain - IL12A ENSG00000168811 CDS Human protein_coding chr3:159711533 chr3:159711532 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_15962 0 0 0 0 2 IL12A chr3:159711488 3'AG 159711488 Downstream 45bp 15254 chr3 159711532 159711532 1 + G T LIHC 159711533 + 159711513 159711553 41 AAGACTTGAAGATGTACCAGGTGGAGTTCAAGACCATGAAT AAGACTTGAAGATGTACCATGTGGAGTTCAAGACCATGAAT < 41bp 0.479789130912523 0.783487121248011 NA NA prediction 0.566974242496021 Functional Gain - IL12A ENSG00000168811 CDS Human protein_coding chr3:159711533 chr3:159711532 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_15962 0 0 0 0 2 IL12A chr3:159711631 5'GT 159711631 Upstream 100bp 15255 chrX 101817816 101817816 1 + G T UCEC 101817817 + 101817797 101817837 41 ACTGCAAGATTCATGATGAGGAAAACCAAAAGGTATATGTC ACTGCAAGATTCATGATGATGAAAACCAAAAGGTATATGTC < 41bp 0.534026693593218 0.817495328855322 NA NA prediction 0.566937270524208 Functional Gain - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101817817 chrX:101817816 . . 0 20 hm7G_associated_SNPs_15964 0 0 0 0 2 NXF4 chrX:101817724 3'AG 101817724 Downstream 93bp 15256 chrX 101817816 101817816 1 + G T UCEC 101817817 + 101817797 101817837 41 ACTGCAAGATTCATGATGAGGAAAACCAAAAGGTATATGTC ACTGCAAGATTCATGATGATGAAAACCAAAAGGTATATGTC < 41bp 0.534026693593218 0.817495328855322 NA NA prediction 0.566937270524208 Functional Gain - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101817817 chrX:101817816 . . 0 20 hm7G_associated_SNPs_15964 0 0 0 0 2 NXF4 chrX:101817828 5'GT 101817828 Upstream 13bp 15257 chr11 124749374 124749374 1 + G T rs187100978 124749375 + 124749355 124749395 41 CTGCAGGCAGAACCTGGCAGGGGAATGGGGAGATGACTCCC CTGCAGGCAGAACCTGGCATGGGAATGGGGAGATGACTCCC < 41bp 0.566504905898629 0.849946691998101 NA NA prediction 0.566883572198944 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124749375 chr11:124749374 nonsynonymous SNV 0.332 0 20 hm7G_associated_SNPs_15970 0 0 0 0 2 ROBO3 chr11:124749361 3'AG 124749361 Downstream 14bp 15258 chr11 124749374 124749374 1 + G T rs187100978 124749375 + 124749355 124749395 41 CTGCAGGCAGAACCTGGCAGGGGAATGGGGAGATGACTCCC CTGCAGGCAGAACCTGGCATGGGAATGGGGAGATGACTCCC < 41bp 0.566504905898629 0.849946691998101 NA NA prediction 0.566883572198944 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124749375 chr11:124749374 nonsynonymous SNV 0.332 0 20 hm7G_associated_SNPs_15970 0 0 0 0 2 ROBO3 chr11:124749471 5'GT 124749471 Upstream 98bp 15259 chr8 75737719 75737719 1 + G T LUAD 75737720 + 75737700 75737740 41 TTATCATAATCAAGTTCGGGGCAAAGTGTTCCCACCGGCAG TTATCATAATCAAGTTCGGTGCAAAGTGTTCCCACCGGCAG < 41bp 0.512190802634524 0.795629616339609 NA NA prediction 0.56687762741017 Functional Gain - PI15 ENSG00000137558 CDS Human protein_coding chr8:75737720 chr8:75737719 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_15971 0 0 0 0 1 PI15 chr8:75737757 5'GT 75737757 Upstream 39bp 15260 chr8 69028072 69028072 1 + G T SKCM 69028073 + 69028053 69028093 41 CAGACAGTGACAATGAGAAGGGAGAAAGAAACAGCAAACGG CAGACAGTGACAATGAGAATGGAGAAAGAAACAGCAAACGG < 41bp 0.477211701089895 0.783398941450265 NA NA prediction 0.56679788290053 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69028073 chr8:69028072 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15978 0 0 0 0 2 PREX2 chr8:69027988 3'AG 69027988 Downstream 85bp 15261 chr8 69028072 69028072 1 + G T SKCM 69028073 + 69028053 69028093 41 CAGACAGTGACAATGAGAAGGGAGAAAGAAACAGCAAACGG CAGACAGTGACAATGAGAATGGAGAAAGAAACAGCAAACGG < 41bp 0.477211701089895 0.783398941450265 NA NA prediction 0.56679788290053 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69028073 chr8:69028072 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_15978 0 0 0 0 2 PREX2 chr8:69028167 5'GT 69028167 Upstream 96bp 15262 chr19 36362248 36362248 1 + G T UCEC 36362249 + 36362229 36362269 41 GGAGGCATCAGGAGGCACAGGAGGTCAGGACGTTGGCCCAC GGAGGCATCAGGAGGCACATGAGGTCAGGACGTTGGCCCAC < 41bp 0.568602885861214 0.851980307044746 NA NA prediction 0.566754842367065 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36362249 chr19:36362248 nonsynonymous SNV 0.850 3 20 hm7G_associated_SNPs_15979 0 0 0 0 1 APLP1 chr19:36362251 5'GT 36362251 Upstream 4bp 15263 chr2 203147184 203147184 1 + G T UCEC 203147185 + 203147165 203147205 41 AGCTGATGCTAAACTAGGAGGGGTCATAAAGGTAAAGTCAC AGCTGATGCTAAACTAGGATGGGTCATAAAGGTAAAGTCAC < 41bp 0.547820154950315 0.83118210065502 NA NA prediction 0.56672389140941 Functional Gain - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203147185 chr2:203147184 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_15982 0 0 1 0 1 NOP58 chr2:203147195 5'GT 203147195 Upstream 12bp 15264 chr6 161530849 161530849 1 + G T LUAD 161530850 + 161530830 161530870 41 TAGAAGAGGTGTCAAGGCTGGGACTTCAGGAACATGTGATT TAGAAGAGGTGTCAAGGCTTGGACTTCAGGAACATGTGATT < 41bp 0.458526220958305 0.783344465114205 NA NA prediction 0.566688930228411 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161530850 chr6:161530849 synonymous SNV . 0 20 hm7G_associated_SNPs_15984 0 0 1 2 1 MAP3K4 chr6:161530787 3'AG 161530787 Downstream 63bp 15265 chr4 186353342 186353342 1 + G T UCEC 186353343 + 186353323 186353363 41 AGCATTCCTCCCTAGTAATGGAGAGAAAAAGCCGTAAGTGT AGCATTCCTCCCTAGTAATTGAGAGAAAAAGCCGTAAGTGT < 41bp 0.490428898323757 0.783332987653595 NA NA prediction 0.566665975307191 Functional Gain - C4orf47 ENSG00000205129 CDS Human protein_coding chr4:186353343 chr4:186353342 stopgain 0.932 1 20 hm7G_associated_SNPs_15985 0 0 0 0 1 C4orf47 chr4:186353355 5'GT 186353355 Upstream 14bp 15266 chr2 234737617 234737617 1 + G T LIHC 234737618 + 234737598 234737638 41 CAACAGCGTGACTGCCGAGGGCATGGAGGCCCTGACCAAGA CAACAGCGTGACTGCCGAGTGCATGGAGGCCCTGACCAAGA < 41bp 0.520109096783316 0.80343281806774 NA NA prediction 0.566647442568847 Functional Gain - MROH2A ENSG00000185038 CDS Human protein_coding chr2:234737618 chr2:234737617 nonsynonymous SNV 0.153 0 20 hm7G_associated_SNPs_15987 0 0 0 0 1 MROH2A chr2:234737536 3'AG 234737536 Downstream 82bp 15267 chr7 99700524 99700524 1 + G T STAD 99700525 + 99700505 99700545 41 CGATTACTGTGGCTCCCTGGGCGAGGGGACCATCTCCCGCA CGATTACTGTGGCTCCCTGTGCGAGGGGACCATCTCCCGCA < 41bp 0.575464778157056 0.858786489715285 NA NA prediction 0.566643423116459 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700525 chr7:99700524 nonsynonymous SNV 0.544 1 20 hm7G_associated_SNPs_15990 0 0 0 0 3 AP4M1 chr7:99700487 3'AG 99700487 Downstream 38bp 15268 chr7 99700524 99700524 1 + G T STAD 99700525 + 99700505 99700545 41 CGATTACTGTGGCTCCCTGGGCGAGGGGACCATCTCCCGCA CGATTACTGTGGCTCCCTGTGCGAGGGGACCATCTCCCGCA < 41bp 0.575464778157056 0.858786489715285 NA NA prediction 0.566643423116459 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700525 chr7:99700524 nonsynonymous SNV 0.544 1 20 hm7G_associated_SNPs_15990 0 0 0 0 3 AP4M1 chr7:99700556 5'GT 99700556 Upstream 33bp 15269 chr7 99700524 99700524 1 + G T STAD 99700525 + 99700505 99700545 41 CGATTACTGTGGCTCCCTGGGCGAGGGGACCATCTCCCGCA CGATTACTGTGGCTCCCTGTGCGAGGGGACCATCTCCCGCA < 41bp 0.575464778157056 0.858786489715285 NA NA prediction 0.566643423116459 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700525 chr7:99700524 nonsynonymous SNV 0.544 1 20 hm7G_associated_SNPs_15990 0 0 0 0 3 AP4M1 chr7:99700583 5'GT 99700583 Upstream 60bp 15270 chr2 74682559 74682559 1 + G T LUAD 74682560 + 74682540 74682580 41 CCTGGAGTTGAGCCTGGCGGGTGCCCATGGCCATGGAGTGC CCTGGAGTTGAGCCTGGCGTGTGCCCATGGCCATGGAGTGC < 41bp 0.462989879442878 0.783306542453176 NA NA prediction 0.566613084906351 Functional Gain - INO80B ENSG00000115274 CDS Human protein_coding chr2:74682560 chr2:74682559 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_15994 0 0 1 0 1 INO80B chr2:74682533 3'AG 74682533 Downstream 27bp 15271 chr17 16325914 16325914 1 + G T READ 16325915 + 16325895 16325935 41 CCTCCCTTCTTCCCACAGAGGGCTCCACAGGTAAGACGTGC CCTCCCTTCTTCCCACAGATGGCTCCACAGGTAAGACGTGC < 41bp 0.57149677943705 0.854783542006063 NA NA prediction 0.566573525138026 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16325915 chr17:16325914 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_15996 0 0 0 0 1 TRPV2 chr17:16325913 3'AG 16325913 Downstream 2bp 15272 chr5 80551012 80551012 1 + G T UCEC 80551013 + 80550993 80551033 41 TGTCCGAGATGACGGAGCAGGACCAGCAGCGGCTCATCGAT TGTCCGAGATGACGGAGCATGACCAGCAGCGGCTCATCGAT < 41bp 0.478275171503294 0.783282819539745 NA NA prediction 0.56656563907949 Functional Gain - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80551013 chr5:80551012 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_15997 0 0 0 0 1 CKMT2 chr5:80551033 5'GT 80551033 Upstream 22bp 15273 chr5 112860718 112860718 1 + G T UCEC 112860719 + 112860699 112860739 41 AACTGTGAAGAAGAAAGATGGATCAGAAACAGCTCATGCAA AACTGTGAAGAAGAAAGATTGATCAGAAACAGCTCATGCAA < 41bp 0.51997928907318 0.803250214529086 NA NA prediction 0.566541850911813 Functional Gain - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112860719 chr5:112860718 stopgain 1.000 1 20 hm7G_associated_SNPs_16001 0 0 1 0 1 YTHDC2 chr5:112860678 3'AG 112860678 Downstream 41bp 15274 chr3 102157379 102157379 1 + G T LUAD 102157380 + 102157360 102157400 41 TAACAATTAGAGTGCTTCCGGGGTCTGCTCAGTTCAACGGC TAACAATTAGAGTGCTTCCTGGGTCTGCTCAGTTCAACGGC < 41bp 0.47493735424244 0.78326919863231 NA NA prediction 0.566538397264619 Functional Gain - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102157380 chr3:102157379 synonymous SNV . 0 20 hm7G_associated_SNPs_16002 0 0 0 0 2 ZPLD1 chr3:102157324 3'AG 102157324 Downstream 56bp 15275 chr3 102157379 102157379 1 + G T LUAD 102157380 + 102157360 102157400 41 TAACAATTAGAGTGCTTCCGGGGTCTGCTCAGTTCAACGGC TAACAATTAGAGTGCTTCCTGGGTCTGCTCAGTTCAACGGC < 41bp 0.47493735424244 0.78326919863231 NA NA prediction 0.566538397264619 Functional Gain - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102157380 chr3:102157379 synonymous SNV . 0 20 hm7G_associated_SNPs_16002 0 0 0 0 2 ZPLD1 chr3:102157437 5'GT 102157437 Upstream 59bp 15276 chr20 42271157 42271157 1 + G T LUAD 42271158 + 42271138 42271178 41 ATTTTATGTCAGGAAGTGTGGTGATATTCTTGGAGTAACCA ATTTTATGTCAGGAAGTGTTGTGATATTCTTGGAGTAACCA < 41bp 0.47854573440977 0.783264417042547 NA NA prediction 0.566528834085094 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42271158 chr20:42271157 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16003 0 0 1 1 1 IFT52 chr20:42271119 3'AG 42271119 Downstream 39bp 15277 chrX 135104823 135104823 1 + G T LUAD 135104824 + 135104804 135104844 41 GGGTAGAAGAAGTAAGATTGGATCAAATTTTCAACACATGA GGGTAGAAGAAGTAAGATTTGATCAAATTTTCAACACATGA < 41bp 0.47650126877961 0.783261116200705 NA NA prediction 0.56652223240141 Functional Gain - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135104824 chrX:135104823 stopgain 1.000 1 20 hm7G_associated_SNPs_16004 0 0 1 0 2 SLC9A6 chrX:135104745 3'AG 135104745 Downstream 79bp 15278 chrX 135104823 135104823 1 + G T LUAD 135104824 + 135104804 135104844 41 GGGTAGAAGAAGTAAGATTGGATCAAATTTTCAACACATGA GGGTAGAAGAAGTAAGATTTGATCAAATTTTCAACACATGA < 41bp 0.47650126877961 0.783261116200705 NA NA prediction 0.56652223240141 Functional Gain - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135104824 chrX:135104823 stopgain 1.000 1 20 hm7G_associated_SNPs_16004 0 0 1 0 2 SLC9A6 chrX:135104856 5'GT 135104856 Upstream 34bp 15279 chr18 28934290 28934290 1 + G T UCEC 28934291 + 28934271 28934311 41 TTACGCAGATGAAGATGAAGGACGCCCATCTAATGACTGTT TTACGCAGATGAAGATGAATGACGCCCATCTAATGACTGTT < 41bp 0.489330812092242 0.783246488141193 NA NA prediction 0.566492976282387 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28934291 chr18:28934290 stopgain 1.000 1 20 hm7G_associated_SNPs_16007 0 0 0 0 1 DSG1 chr18:28934260 3'AG 28934260 Downstream 31bp 15280 chr16 55806303 55806303 1 + G T ESCA 55806304 + 55806284 55806324 41 AGGGGATGAACACAGCCCGGGGAACTGGGGTCACCTGGACC AGGGGATGAACACAGCCCGTGGAACTGGGGTCACCTGGACC < 41bp 0.536939837029446 0.820169491014642 NA NA prediction 0.566459307970392 Functional Gain - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55806304 chr16:55806303 . . 0 20 hm7G_associated_SNPs_16008 0 0 0 0 1 CES1P1 chr16:55806281 3'AG 55806281 Downstream 23bp 15281 chr5 173531326 173531326 1 + G T COAD 173531327 + 173531307 173531347 41 ATGATCACAGCTGCCCAGAGGGATTCGTCTATAAGGTAAGA ATGATCACAGCTGCCCAGATGGATTCGTCTATAAGGTAAGA < 41bp 0.547442990974666 0.830671527353993 NA NA prediction 0.566457072758655 Functional Gain - HMP19 ENSG00000170091 CDS Human protein_coding chr5:173531327 chr5:173531326 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16009 0 0 0 0 2 HMP19 chr5:173531231 3'AG 173531231 Downstream 96bp 15282 chr5 173531326 173531326 1 + G T COAD 173531327 + 173531307 173531347 41 ATGATCACAGCTGCCCAGAGGGATTCGTCTATAAGGTAAGA ATGATCACAGCTGCCCAGATGGATTCGTCTATAAGGTAAGA < 41bp 0.547442990974666 0.830671527353993 NA NA prediction 0.566457072758655 Functional Gain - HMP19 ENSG00000170091 CDS Human protein_coding chr5:173531327 chr5:173531326 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16009 0 0 0 0 2 HMP19 chr5:173531341 5'GT 173531341 Upstream 16bp 15283 chr1 247597537 247597537 1 + G T LUSC 247597538 + 247597518 247597558 41 GAATCAGACTTCTGTGTGTGGGACTGAAGCACCTGTTGTGC GAATCAGACTTCTGTGTGTTGGACTGAAGCACCTGTTGTGC < 41bp 0.456045946440391 0.783223127729328 NA NA prediction 0.566446255458656 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247597538 chr1:247597537 synonymous SNV . 0 20 hm7G_associated_SNPs_16010 0 0 0 0 2 NLRP3 chr1:247597465 3'AG 247597465 Downstream 73bp 15284 chr1 247597537 247597537 1 + G T LUSC 247597538 + 247597518 247597558 41 GAATCAGACTTCTGTGTGTGGGACTGAAGCACCTGTTGTGC GAATCAGACTTCTGTGTGTTGGACTGAAGCACCTGTTGTGC < 41bp 0.456045946440391 0.783223127729328 NA NA prediction 0.566446255458656 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247597538 chr1:247597537 synonymous SNV . 0 20 hm7G_associated_SNPs_16010 0 0 0 0 2 NLRP3 chr1:247597575 5'GT 247597575 Upstream 39bp 15285 chr6 34498111 34498111 1 + G T LUSC 34498112 + 34498092 34498132 41 CCGCAGCACCAGTGGCCCCGGCATGCCCATGAACTGGCCCC CCGCAGCACCAGTGGCCCCTGCATGCCCATGAACTGGCCCC < 41bp 0.576356735000696 0.859579715121151 NA NA prediction 0.566445960240909 Functional Gain - PACSIN1 ENSG00000124507 CDS Human protein_coding chr6:34498112 chr6:34498111 nonsynonymous SNV 0.242 4 20 hm7G_associated_SNPs_16011 0 0 0 0 2 PACSIN1 chr6:34498020 3'AG 34498020 Downstream 92bp 15286 chr6 34498111 34498111 1 + G T LUSC 34498112 + 34498092 34498132 41 CCGCAGCACCAGTGGCCCCGGCATGCCCATGAACTGGCCCC CCGCAGCACCAGTGGCCCCTGCATGCCCATGAACTGGCCCC < 41bp 0.576356735000696 0.859579715121151 NA NA prediction 0.566445960240909 Functional Gain - PACSIN1 ENSG00000124507 CDS Human protein_coding chr6:34498112 chr6:34498111 nonsynonymous SNV 0.242 4 20 hm7G_associated_SNPs_16011 0 0 0 0 2 PACSIN1 chr6:34498140 5'GT 34498140 Upstream 30bp 15287 chr19 19650526 19650526 1 + G T BLCA 19650527 + 19650507 19650547 41 GCCAATGGCGACTGCACTGGGCCTGGAAAGACGGTCCGTGT GCCAATGGCGACTGCACTGTGCCTGGAAAGACGGTCCGTGT < 41bp 0.564704279803716 0.847927059357546 NA NA prediction 0.56644555910766 Functional Gain - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19650527 chr19:19650526 nonsynonymous SNV 0.006 2 20 hm7G_associated_SNPs_16012 0 0 0 0 2 CILP2 chr19:19650488 3'AG 19650488 Downstream 39bp 15288 chr19 19650526 19650526 1 + G T BLCA 19650527 + 19650507 19650547 41 GCCAATGGCGACTGCACTGGGCCTGGAAAGACGGTCCGTGT GCCAATGGCGACTGCACTGTGCCTGGAAAGACGGTCCGTGT < 41bp 0.564704279803716 0.847927059357546 NA NA prediction 0.56644555910766 Functional Gain - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19650527 chr19:19650526 nonsynonymous SNV 0.006 2 20 hm7G_associated_SNPs_16012 0 0 0 0 2 CILP2 chr19:19650586 5'GT 19650586 Upstream 61bp 15289 chr1 152975665 152975665 1 + G T COAD 152975666 + 152975646 152975686 41 CACAAAGATTCCAGAGCCAGGCTGTACCAAGGTCCCTGAGC CACAAAGATTCCAGAGCCATGCTGTACCAAGGTCCCTGAGC < 41bp 0.544630555049615 0.827818492457024 NA NA prediction 0.566375874814818 Functional Gain - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975666 chr1:152975665 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_16014 0 0 0 0 1 SPRR3 chr1:152975676 5'GT 152975676 Upstream 12bp 15290 chr2 33764264 33764264 1 + G T HNSC 33764265 + 33764245 33764285 41 GTCATCAACAAGCACATAAGGAAATTAGTGGAGGTAAGTGG GTCATCAACAAGCACATAATGAAATTAGTGGAGGTAAGTGG < 41bp 0.557368962301595 0.840555962915557 NA NA prediction 0.566374001227925 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33764265 chr2:33764264 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_16015 0 0 0 0 1 RASGRP3 chr2:33764277 5'GT 33764277 Upstream 14bp 15291 chr3 122964832 122964832 1 + G T UCEC 122964833 + 122964813 122964853 41 AGCTCTGAATTTAATTCGAGGCTTTCATGCTATAGAAAGTC AGCTCTGAATTTAATTCGATGCTTTCATGCTATAGAAAGTC < 41bp 0.473994530787079 0.783176433770532 NA NA prediction 0.566352867541065 Functional Gain - SEC22A ENSG00000121542 CDS Human protein_coding chr3:122964833 chr3:122964832 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16016 0 0 1 0 2 SEC22A chr3:122964746 3'AG 122964746 Downstream 87bp 15292 chr3 122964832 122964832 1 + G T UCEC 122964833 + 122964813 122964853 41 AGCTCTGAATTTAATTCGAGGCTTTCATGCTATAGAAAGTC AGCTCTGAATTTAATTCGATGCTTTCATGCTATAGAAAGTC < 41bp 0.473994530787079 0.783176433770532 NA NA prediction 0.566352867541065 Functional Gain - SEC22A ENSG00000121542 CDS Human protein_coding chr3:122964833 chr3:122964832 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16016 0 0 1 0 2 SEC22A chr3:122964861 5'GT 122964861 Upstream 30bp 15293 chr7 23775477 23775477 1 + G T rs10264967 23775478 + 23775458 23775498 41 AAATGACTCTTGACTTGAAGGATGAAAATGATGCAGGCAAT AAATGACTCTTGACTTGAATGATGAAAATGATGCAGGCAAT < 41bp 0.541342750785637 0.824518769998469 NA NA prediction 0.566352038425664 Functional Gain - STK31 ENSG00000196335 CDS Human protein_coding chr7:23775478 chr7:23775477 nonsynonymous SNV 0.312 3 20 hm7G_associated_SNPs_16017 0 0 0 0 1 STK31 chr7:23775515 5'GT 23775515 Upstream 39bp 15294 chr16 23203735 23203735 1 + G T LUAD 23203736 + 23203716 23203756 41 CGGGAATCAATGCCATTCAGGAGTGGTATAAGCTACACTAC CGGGAATCAATGCCATTCATGAGTGGTATAAGCTACACTAC < 41bp 0.565913399775119 0.849077366008436 NA NA prediction 0.566327932466633 Functional Gain - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23203736 chr16:23203735 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_16018 0 0 0 0 1 SCNN1G chr16:23203673 3'AG 23203673 Downstream 63bp 15295 chr22 32009153 32009153 1 + G T LUAD 32009154 + 32009134 32009174 41 GCCAGGAGGCAGGAGCAGCGGGCGACAGTGCGGGCCCTGTG GCCAGGAGGCAGGAGCAGCTGGCGACAGTGCGGGCCCTGTG < 41bp 0.562340945269459 0.845498488658137 NA NA prediction 0.566315086777356 Functional Gain - SFI1 ENSG00000198089 CDS Human protein_coding chr22:32009154 chr22:32009153 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_16020 0 0 0 0 2 SFI1 chr22:32009128 3'AG 32009128 Downstream 26bp 15296 chr22 32009153 32009153 1 + G T LUAD 32009154 + 32009134 32009174 41 GCCAGGAGGCAGGAGCAGCGGGCGACAGTGCGGGCCCTGTG GCCAGGAGGCAGGAGCAGCTGGCGACAGTGCGGGCCCTGTG < 41bp 0.562340945269459 0.845498488658137 NA NA prediction 0.566315086777356 Functional Gain - SFI1 ENSG00000198089 CDS Human protein_coding chr22:32009154 chr22:32009153 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_16020 0 0 0 0 2 SFI1 chr22:32009202 5'GT 32009202 Upstream 50bp 15297 chr1 22332024 22332024 1 + G T LUAD 22332025 + 22332005 22332045 41 CGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTC CGATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGTTC < 41bp 0.552185198681315 0.835325230606897 NA NA prediction 0.566280063851164 Functional Gain - CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332025 chr1:22332024 nonsynonymous SNV 0.608 3 20 hm7G_associated_SNPs_16021 0 0 0 0 2 CELA3A chr1:22331940 3'AG 22331940 Downstream 85bp 15298 chr1 22332024 22332024 1 + G T LUAD 22332025 + 22332005 22332045 41 CGATTGGGTTGTGACTGCCGGCCACTGCATCTCGTGAGTTC CGATTGGGTTGTGACTGCCTGCCACTGCATCTCGTGAGTTC < 41bp 0.552185198681315 0.835325230606897 NA NA prediction 0.566280063851164 Functional Gain - CELA3A ENSG00000142789 CDS Human protein_coding chr1:22332025 chr1:22332024 nonsynonymous SNV 0.608 3 20 hm7G_associated_SNPs_16021 0 0 0 0 2 CELA3A chr1:22332037 5'GT 22332037 Upstream 14bp 15299 chr16 85111183 85111183 1 + G T rs545008986 85111184 + 85111164 85111204 41 CAGGACTGAGAATGTCAAGGGCTTCTTCGGGGGGCTGGAGA CAGGACTGAGAATGTCAAGTGCTTCTTCGGGGGGCTGGAGA < 41bp 0.575893531872975 0.859032748347455 NA NA prediction 0.566278432948962 Functional Gain - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85111184 chr16:85111183 nonsynonymous SNV 0.886 4 20 hm7G_associated_SNPs_16022 0 0 0 0 1 KIAA0513 chr16:85111238 5'GT 85111238 Upstream 56bp 15300 chr15 45723269 45723269 1 + G T KIRC 45723270 + 45723250 45723290 41 TTCGCTGTGTATTCTCTTTGGAAAACCGATGTGATGTAAGT TTCGCTGTGTATTCTCTTTTGAAAACCGATGTGATGTAAGT < 41bp 0.474312705467487 0.783131956666199 NA NA prediction 0.566263913332399 Functional Gain - C15orf48 ENSG00000166920 CDS Human protein_coding chr15:45723270 chr15:45723269 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_16023 0 0 0 0 2 C15orf48 chr15:45723199 3'AG 45723199 Downstream 71bp 15301 chr15 45723269 45723269 1 + G T KIRC 45723270 + 45723250 45723290 41 TTCGCTGTGTATTCTCTTTGGAAAACCGATGTGATGTAAGT TTCGCTGTGTATTCTCTTTTGAAAACCGATGTGATGTAAGT < 41bp 0.474312705467487 0.783131956666199 NA NA prediction 0.566263913332399 Functional Gain - C15orf48 ENSG00000166920 CDS Human protein_coding chr15:45723270 chr15:45723269 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_16023 0 0 0 0 2 C15orf48 chr15:45723284 5'GT 45723284 Upstream 16bp 15302 chr2 200820884 200820884 1 + G T BRCA 200820885 + 200820865 200820905 41 TCTCCAACCCCATCAACTGGGTTAGGACTCGAATTAAGGCC TCTCCAACCCCATCAACTGTGTTAGGACTCGAATTAAGGCC < 41bp 0.551560063333051 0.834678071627488 NA NA prediction 0.566236016588873 Functional Gain - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200820885 chr2:200820884 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16025 0 0 1 0 1 MAIP1 chr2:200820971 5'GT 200820971 Upstream 88bp 15303 chr4 156698768 156698768 1 + G T LUAD 156698769 + 156698749 156698789 41 TACAATCTTGCGTGTCCTGGGCTCTAATGTCAGAGAATTTC TACAATCTTGCGTGTCCTGTGCTCTAATGTCAGAGAATTTC < 41bp 0.54792930615396 0.831018549933773 NA NA prediction 0.566178487559626 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156698769 chr4:156698768 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16028 0 0 0 0 2 GUCY1B3 chr4:156698676 3'AG 156698676 Downstream 93bp 15304 chr4 156698768 156698768 1 + G T LUAD 156698769 + 156698749 156698789 41 TACAATCTTGCGTGTCCTGGGCTCTAATGTCAGAGAATTTC TACAATCTTGCGTGTCCTGTGCTCTAATGTCAGAGAATTTC < 41bp 0.54792930615396 0.831018549933773 NA NA prediction 0.566178487559626 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156698769 chr4:156698768 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16028 0 0 0 0 2 GUCY1B3 chr4:156698794 5'GT 156698794 Upstream 27bp 15305 chr7 30673416 30673416 1 + G T STAD 30673417 + 30673397 30673437 41 TCACATGGGCTGATGTGGAGGCCAGGTATCCTCTGTTTGAA TCACATGGGCTGATGTGGATGCCAGGTATCCTCTGTTTGAA < 41bp 0.539796340423861 0.82286818442627 NA NA prediction 0.566143688004817 Functional Gain - GARS ENSG00000106105 CDS Human protein_coding chr7:30673417 chr7:30673416 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16032 0 0 1 0 1 GARS chr7:30673351 3'AG 30673351 Downstream 66bp 15306 chr5 179264797 179264797 1 - C A SKCM 179264796 - 179264776 179264816 41 TGCAGTGCCGGGGAGCTGAGGGGTCCTGGGAAGGAGCTATG TGCAGTGCCGGGGAGCTGATGGGTCCTGGGAAGGAGCTATG < 41bp 0.559718341528549 0.842774499521634 NA NA prediction 0.566112315986171 Functional Gain - MRNIP ENSG00000161010 CDS Human protein_coding chr5:179264796 chr5:179264797 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16033 0 0 1 0 2 MRNIP chr5:179264760 5'GT 179264760 Upstream 38bp 15307 chr5 179264797 179264797 1 - C A SKCM 179264796 - 179264776 179264816 41 TGCAGTGCCGGGGAGCTGAGGGGTCCTGGGAAGGAGCTATG TGCAGTGCCGGGGAGCTGATGGGTCCTGGGAAGGAGCTATG < 41bp 0.559718341528549 0.842774499521634 NA NA prediction 0.566112315986171 Functional Gain - MRNIP ENSG00000161010 CDS Human protein_coding chr5:179264796 chr5:179264797 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16033 0 0 1 0 2 MRNIP chr5:179264885 3'AG 179264885 Downstream 89bp 15308 chr3 66413324 66413324 1 + G T LAML 66413325 + 66413305 66413345 41 GATCATGTGGTGGATTCTTGGCAGTCAGCAGTCTGTGGAGC GATCATGTGGTGGATTCTTTGCAGTCAGCAGTCTGTGGAGC < 41bp 0.469083504313521 0.78304576062969 NA NA prediction 0.56609152125938 Functional Gain - SLC25A26 ENSG00000144741 CDS Human protein_coding chr3:66413325 chr3:66413324 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16034 0 0 1 0 2 SLC25A26 chr3:66413284 3'AG 66413284 Downstream 41bp 15309 chr3 66413324 66413324 1 + G T LAML 66413325 + 66413305 66413345 41 GATCATGTGGTGGATTCTTGGCAGTCAGCAGTCTGTGGAGC GATCATGTGGTGGATTCTTTGCAGTCAGCAGTCTGTGGAGC < 41bp 0.469083504313521 0.78304576062969 NA NA prediction 0.56609152125938 Functional Gain - SLC25A26 ENSG00000144741 CDS Human protein_coding chr3:66413325 chr3:66413324 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16034 0 0 1 0 2 SLC25A26 chr3:66413353 5'GT 66413353 Upstream 30bp 15310 chr17 48435581 48435581 1 + G T COAD 48435582 + 48435562 48435602 41 CTACAGGTTGGCACTGATTGGGACCCCAAAGAGCGTCTTTT CTACAGGTTGGCACTGATTTGGACCCCAAAGAGCGTCTTTT < 41bp 0.458801991942701 0.783040057131892 NA NA prediction 0.566080114263785 Functional Gain - XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48435582 chr17:48435581 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16036 0 0 1 0 1 XYLT2 chr17:48435568 3'AG 48435568 Downstream 14bp 15311 chr3 33906912 33906912 1 + G T UCEC 33906913 + 33906893 33906933 41 ACCCTATCCCACCTATCCAGGATATCCTGGGTAAGGCTGCA ACCCTATCCCACCTATCCATGATATCCTGGGTAAGGCTGCA < 41bp 0.554142682369964 0.837182351304267 NA NA prediction 0.566079337868605 Functional Gain - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33906913 chr3:33906912 stopgain 1.000 1 20 hm7G_associated_SNPs_16037 0 0 1 0 1 PDCD6IP chr3:33906922 5'GT 33906922 Upstream 11bp 15312 chr3 38045845 38045845 1 + G T CESC 38045846 + 38045826 38045866 41 TGGGGTTCTTCAGCCAGGAGGACCTGGACAAGTATGACATC TGGGGTTCTTCAGCCAGGATGACCTGGACAAGTATGACATC < 41bp 0.452335668304619 0.783038209945549 NA NA prediction 0.566076419891098 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38045846 chr3:38045845 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16038 0 0 0 0 2 VILL chr3:38045746 3'AG 38045746 Downstream 100bp 15313 chr3 38045845 38045845 1 + G T CESC 38045846 + 38045826 38045866 41 TGGGGTTCTTCAGCCAGGAGGACCTGGACAAGTATGACATC TGGGGTTCTTCAGCCAGGATGACCTGGACAAGTATGACATC < 41bp 0.452335668304619 0.783038209945549 NA NA prediction 0.566076419891098 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38045846 chr3:38045845 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16038 0 0 0 0 2 VILL chr3:38045890 5'GT 38045890 Upstream 46bp 15314 chr8 91893337 91893337 1 + G T UCEC 91893338 + 91893318 91893358 41 TGAATCTTTCCATCCTGAAGGCAATGGGCAAAACAAAGAAA TGAATCTTTCCATCCTGAATGCAATGGGCAAAACAAAGAAA < 41bp 0.527925001488022 0.810939755025714 NA NA prediction 0.566029507075385 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91893338 chr8:91893337 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16039 0 0 0 0 2 NECAB1 chr8:91893261 3'AG 91893261 Downstream 77bp 15315 chr8 91893337 91893337 1 + G T UCEC 91893338 + 91893318 91893358 41 TGAATCTTTCCATCCTGAAGGCAATGGGCAAAACAAAGAAA TGAATCTTTCCATCCTGAATGCAATGGGCAAAACAAAGAAA < 41bp 0.527925001488022 0.810939755025714 NA NA prediction 0.566029507075385 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91893338 chr8:91893337 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16039 0 0 0 0 2 NECAB1 chr8:91893358 5'GT 91893358 Upstream 22bp 15316 chr22 29628307 29628307 1 + G T LUSC 29628308 + 29628288 29628328 41 GGGCACCCCTGGAGAGAGGGGACCTCCTGGGCCACCAGGGC GGGCACCCCTGGAGAGAGGTGACCTCCTGGGCCACCAGGGC < 41bp 0.449616251483445 0.783006964634193 NA NA prediction 0.566013929268386 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29628308 chr22:29628307 stopgain 0.961 0 20 hm7G_associated_SNPs_16040 0 0 0 0 2 EMID1 chr22:29628245 3'AG 29628245 Downstream 63bp 15317 chr22 29628307 29628307 1 + G T LUSC 29628308 + 29628288 29628328 41 GGGCACCCCTGGAGAGAGGGGACCTCCTGGGCCACCAGGGC GGGCACCCCTGGAGAGAGGTGACCTCCTGGGCCACCAGGGC < 41bp 0.449616251483445 0.783006964634193 NA NA prediction 0.566013929268386 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29628308 chr22:29628307 stopgain 0.961 0 20 hm7G_associated_SNPs_16040 0 0 0 0 2 EMID1 chr22:29628391 5'GT 29628391 Upstream 85bp 15318 chr2 174229611 174229611 1 + G T HNSC 174229612 + 174229592 174229632 41 CGTCCTCTTACCAGGTCAAGGTCCCGGATCCTCGGGTCCCT CGTCCTCTTACCAGGTCAATGTCCCGGATCCTCGGGTCCCT < 41bp 0.557585836651267 0.840589997258808 NA NA prediction 0.566008321215082 Functional Gain - CDCA7 ENSG00000144354 CDS Human protein_coding chr2:174229612 chr2:174229611 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_16042 0 0 1 0 1 CDCA7 chr2:174229523 3'AG 174229523 Downstream 89bp 15319 chr12 32490723 32490723 1 + G T THCA 32490724 + 32490704 32490744 41 CCACAGACACCCAACATTCGGGTCAGCAGTGGCACTCAGAG CCACAGACACCCAACATTCTGGTCAGCAGTGGCACTCAGAG < 41bp 0.549361420827421 0.832346740417684 NA NA prediction 0.565970639180526 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32490724 chr12:32490723 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16047 0 0 1 0 1 BICD1 chr12:32490750 5'GT 32490750 Upstream 28bp 15320 chr2 162711511 162711511 1 + G T COAD 162711512 + 162711492 162711532 41 TGAAGAAGATGTGGAAGATGGAGGAGAAAGGTGGAGCAAGC TGAAGAAGATGTGGAAGATTGAGGAGAAAGGTGGAGCAAGC < 41bp 0.517836002277882 0.800820402128517 NA NA prediction 0.56596879970127 Functional Gain - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162711512 chr2:162711511 stopgain 1.000 1 20 hm7G_associated_SNPs_16048 0 0 0 0 1 SLC4A10 chr2:162711480 3'AG 162711480 Downstream 32bp 15321 chr7 105664831 105664831 1 + G T UCEC 105664832 + 105664812 105664852 41 TCTCTGTTGTTCAAGCCCAGGGTCACCTATCAGGTCCTGAG TCTCTGTTGTTCAAGCCCATGGTCACCTATCAGGTCCTGAG < 41bp 0.462545570592385 0.782975862479387 NA NA prediction 0.565951724958774 Functional Gain - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105664832 chr7:105664831 nonsynonymous SNV 0.727 2 20 hm7G_associated_SNPs_16050 0 0 0 0 1 CDHR3 chr7:105664827 3'AG 105664827 Downstream 5bp 15322 chr20 34575388 34575388 1 + G T UCEC 34575389 + 34575369 34575409 41 GCCATGGCGAAGATAGAGAGGTTCTCGTATGGGCAGCTGAT GCCATGGCGAAGATAGAGATGTTCTCGTATGGGCAGCTGAT < 41bp 0.537288907445478 0.820259711651853 NA NA prediction 0.565941608412751 Functional Gain - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34575389 chr20:34575388 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_16051 0 0 0 0 2 CNBD2 chr20:34575317 3'AG 34575317 Downstream 72bp 15323 chr20 34575388 34575388 1 + G T UCEC 34575389 + 34575369 34575409 41 GCCATGGCGAAGATAGAGAGGTTCTCGTATGGGCAGCTGAT GCCATGGCGAAGATAGAGATGTTCTCGTATGGGCAGCTGAT < 41bp 0.537288907445478 0.820259711651853 NA NA prediction 0.565941608412751 Functional Gain - CNBD2 ENSG00000149646 CDS Human protein_coding chr20:34575389 chr20:34575388 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_16051 0 0 0 0 2 CNBD2 chr20:34575455 5'GT 34575455 Upstream 68bp 15324 chr2 113763577 113763577 1 + G T LUAD 113763578 + 113763558 113763598 41 AATTGACACACCTCAGCAGGGGAGCATTCAGGATATCAATC AATTGACACACCTCAGCAGTGGAGCATTCAGGATATCAATC < 41bp 0.465325522960007 0.782962372067449 NA NA prediction 0.565924744134898 Functional Gain - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763578 chr2:113763577 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16052 0 0 0 0 2 IL36A chr2:113763551 3'AG 113763551 Downstream 27bp 15325 chr2 113763577 113763577 1 + G T LUAD 113763578 + 113763558 113763598 41 AATTGACACACCTCAGCAGGGGAGCATTCAGGATATCAATC AATTGACACACCTCAGCAGTGGAGCATTCAGGATATCAATC < 41bp 0.465325522960007 0.782962372067449 NA NA prediction 0.565924744134898 Functional Gain - IL36A ENSG00000136694 CDS Human protein_coding chr2:113763578 chr2:113763577 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16052 0 0 0 0 2 IL36A chr2:113763664 5'GT 113763664 Upstream 88bp 15326 chr21 40871812 40871812 1 + G T ESCA 40871813 + 40871793 40871833 41 AGAGGGCAGTGAAGATGTGGGCAACCTCCCTGAAGCCCAGG AGAGGGCAGTGAAGATGTGTGCAACCTCCCTGAAGCCCAGG < 41bp 0.562963308011917 0.845902702612727 NA NA prediction 0.56587878920162 Functional Gain - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40871813 chr21:40871812 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_16053 0 0 1 0 2 SH3BGR;WRB-SH3BGR chr21:40871749 3'AG 40871749 Downstream 64bp 15327 chr21 40871812 40871812 1 + G T ESCA 40871813 + 40871793 40871833 41 AGAGGGCAGTGAAGATGTGGGCAACCTCCCTGAAGCCCAGG AGAGGGCAGTGAAGATGTGTGCAACCTCCCTGAAGCCCAGG < 41bp 0.562963308011917 0.845902702612727 NA NA prediction 0.56587878920162 Functional Gain - SH3BGR;WRB-SH3BGR ENSG00000185437 CDS Human protein_coding chr21:40871813 chr21:40871812 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_16053 0 0 1 0 2 SH3BGR;WRB-SH3BGR chr21:40871841 5'GT 40871841 Upstream 30bp 15328 chrX 49173707 49173707 1 + G T LUSC 49173708 + 49173688 49173728 41 TGGGTGTGAGTGTGGAGATGGTCCTGATGGCCAGGAGATGG TGGGTGTGAGTGTGGAGATTGTCCTGATGGCCAGGAGATGG < 41bp 0.543304345044267 0.826240784790765 NA NA prediction 0.565872879492997 Functional Gain - GAGE10 ENSG00000215274 CDS Human protein_coding chrX:49173708 chrX:49173707 nonsynonymous SNV 0.063 3 20 hm7G_associated_SNPs_16054 0 0 0 0 1 GAGE10 chrX:49173767 5'GT 49173767 Upstream 61bp 15329 chr12 118457484 118457484 1 + G T LIHC 118457485 + 118457465 118457505 41 GCCACACTTGCTTCTCTACGGTCCCCCAGGGACAGGCAAGA GCCACACTTGCTTCTCTACTGTCCCCCAGGGACAGGCAAGA < 41bp 0.557707510762737 0.840637638032251 NA NA prediction 0.565860254539029 Functional Gain - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118457485 chr12:118457484 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_16055 0 0 1 0 2 RFC5 chr12:118457437 3'AG 118457437 Downstream 48bp 15330 chr12 118457484 118457484 1 + G T LIHC 118457485 + 118457465 118457505 41 GCCACACTTGCTTCTCTACGGTCCCCCAGGGACAGGCAAGA GCCACACTTGCTTCTCTACTGTCCCCCAGGGACAGGCAAGA < 41bp 0.557707510762737 0.840637638032251 NA NA prediction 0.565860254539029 Functional Gain - RFC5 ENSG00000111445 CDS Human protein_coding chr12:118457485 chr12:118457484 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_16055 0 0 1 0 2 RFC5 chr12:118457573 5'GT 118457573 Upstream 90bp 15331 chrX 128881662 128881662 1 + G T ESCA 128881663 + 128881643 128881683 41 CAACCAATCTTGTGGACCTGGTATGGGGATCAGAGAGGCCA CAACCAATCTTGTGGACCTTGTATGGGGATCAGAGAGGCCA < 41bp 0.560599149271599 0.843517518973908 NA NA prediction 0.565836739404617 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128881663 chrX:128881662 synonymous SNV . 0 20 hm7G_associated_SNPs_16058 0 0 0 0 2 XPNPEP2 chrX:128881583 3'AG 128881583 Downstream 80bp 15332 chrX 128881662 128881662 1 + G T ESCA 128881663 + 128881643 128881683 41 CAACCAATCTTGTGGACCTGGTATGGGGATCAGAGAGGCCA CAACCAATCTTGTGGACCTTGTATGGGGATCAGAGAGGCCA < 41bp 0.560599149271599 0.843517518973908 NA NA prediction 0.565836739404617 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128881663 chrX:128881662 synonymous SNV . 0 20 hm7G_associated_SNPs_16058 0 0 0 0 2 XPNPEP2 chrX:128881729 5'GT 128881729 Upstream 68bp 15333 chr22 38087234 38087234 1 + G T UCEC 38087235 + 38087215 38087255 41 AGCCGCAAAAAGGTCAAGAGGAAACATCCCCGACGGGCCCA AGCCGCAAAAAGGTCAAGATGAAACATCCCCGACGGGCCCA < 41bp 0.558000571126925 0.840905890806427 NA NA prediction 0.565810639359004 Functional Gain - NOL12 ENSG00000100101 CDS Human protein_coding chr22:38087235 chr22:38087234 nonsynonymous SNV 0.837 3 20 hm7G_associated_SNPs_16059 0 0 1 0 1 NOL12 chr22:38087181 3'AG 38087181 Downstream 54bp 15334 chr8 87410811 87410811 1 + G T UCEC 87410812 + 87410792 87410832 41 GTTGTTCAGTAGAAATACAGGAAAATGGTGATGCCTTACAT GTTGTTCAGTAGAAATACATGAAAATGGTGATGCCTTACAT < 41bp 0.532677160651444 0.815581439657644 NA NA prediction 0.5658085580124 Functional Gain - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87410812 chr8:87410811 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16060 0 0 0 0 2 WWP1 chr8:87410801 3'AG 87410801 Downstream 11bp 15335 chr8 87410811 87410811 1 + G T UCEC 87410812 + 87410792 87410832 41 GTTGTTCAGTAGAAATACAGGAAAATGGTGATGCCTTACAT GTTGTTCAGTAGAAATACATGAAAATGGTGATGCCTTACAT < 41bp 0.532677160651444 0.815581439657644 NA NA prediction 0.5658085580124 Functional Gain - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87410812 chr8:87410811 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16060 0 0 0 0 2 WWP1 chr8:87410867 5'GT 87410867 Upstream 57bp 15336 chr12 57389029 57389029 1 + G T STAD 57389030 + 57389010 57389050 41 GCTGGGGGCCTGGCCCCTCGGAGGGGGTCACCGCAGTGCCT GCTGGGGGCCTGGCCCCTCTGAGGGGGTCACCGCAGTGCCT < 41bp 0.542117088394803 0.82501957871274 NA NA prediction 0.565804980635874 Functional Gain - GPR182 ENSG00000166856 CDS Human protein_coding chr12:57389030 chr12:57389029 synonymous SNV . 0 20 hm7G_associated_SNPs_16061 0 0 0 0 1 GPR182 chr12:57388978 3'AG 57388978 Downstream 52bp 15337 chr5 102493957 102493957 1 + G T COAD 102493958 + 102493938 102493978 41 AGGTGAATTAACTCCTGCAGGCAGGGTCCAGGCTGAAGAAC AGGTGAATTAACTCCTGCATGCAGGGTCCAGGCTGAAGAAC < 41bp 0.548645897961014 0.831530627253678 NA NA prediction 0.565769458585327 Functional Gain - PPIP5K2 ENSG00000145725 CDS Human protein_coding chr5:102493958 chr5:102493957 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16063 0 0 1 0 1 PPIP5K2 chr5:102493892 3'AG 102493892 Downstream 66bp 15338 chrX 15840883 15840883 1 + G T UCEC 15840884 + 15840864 15840904 41 AATACAACAATGTCCAAGAGGAAAGCACTGCAACTTTCTTC AATACAACAATGTCCAAGATGAAAGCACTGCAACTTTCTTC < 41bp 0.525000025779196 0.807879826815353 NA NA prediction 0.565759602072314 Functional Gain - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15840884 chrX:15840883 stopgain 1.000 1 20 hm7G_associated_SNPs_16064 0 0 1 0 1 ZRSR2 chrX:15840854 3'AG 15840854 Downstream 30bp 15339 chr2 215279298 215279298 1 + G T UCEC 215279299 + 215279279 215279319 41 AAAATTACAAAATCTTGGAGGAATTTAAGGTATGCGTTACC AAAATTACAAAATCTTGGATGAATTTAAGGTATGCGTTACC < 41bp 0.499547299728962 0.782863741777043 NA NA prediction 0.565727483554087 Functional Gain - VWC2L ENSG00000174453 CDS Human protein_coding chr2:215279299 chr2:215279298 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16065 0 0 0 0 1 VWC2L chr2:215279307 5'GT 215279307 Upstream 10bp 15340 chr7 117828431 117828431 1 + G T PAAD 117828432 + 117828412 117828452 41 GGTAGAACAAGTGGTACTAGGATTATACATTGTAAGAGGTG GGTAGAACAAGTGGTACTATGATTATACATTGTAAGAGGTG < 41bp 0.527482883514722 0.810340358165407 NA NA prediction 0.56571494930137 Functional Gain - LSM8 ENSG00000128534 CDS Human protein_coding chr7:117828432 chr7:117828431 stopgain 0.211 1 20 hm7G_associated_SNPs_16066 0 0 1 0 2 LSM8 chr7:117828332 3'AG 117828332 Downstream 100bp 15341 chr7 117828431 117828431 1 + G T PAAD 117828432 + 117828412 117828452 41 GGTAGAACAAGTGGTACTAGGATTATACATTGTAAGAGGTG GGTAGAACAAGTGGTACTATGATTATACATTGTAAGAGGTG < 41bp 0.527482883514722 0.810340358165407 NA NA prediction 0.56571494930137 Functional Gain - LSM8 ENSG00000128534 CDS Human protein_coding chr7:117828432 chr7:117828431 stopgain 0.211 1 20 hm7G_associated_SNPs_16066 0 0 1 0 2 LSM8 chr7:117828459 5'GT 117828459 Upstream 29bp 15342 chr8 11222452 11222452 1 + G T CESC 11222453 + 11222433 11222473 41 AGGTCCTCAAGCACGTGCCGGAATTCCAGATCACATACAAC AGGTCCTCAAGCACGTGCCTGAATTCCAGATCACATACAAC < 41bp 0.460097539954506 0.782855465304041 NA NA prediction 0.565710930608083 Functional Gain - TDH ENSG00000154316 ncRNA_exonic Human transcribed_unitary_pseudogene chr8:11222453 chr8:11222452 . . 0 20 hm7G_associated_SNPs_16067 0 0 0 0 1 TDH chr8:11222498 5'GT 11222498 Upstream 47bp 15343 chr3 98503826 98503826 1 + G T UCEC 98503827 + 98503807 98503847 41 TGTGGTGGTTGGTAATGGAGGAGTTTTGAAGAATAAGACAT TGTGGTGGTTGGTAATGGATGAGTTTTGAAGAATAAGACAT < 41bp 0.473500161259849 0.782816409446023 NA NA prediction 0.565632818892045 Functional Gain - ST3GAL6 ENSG00000064225 CDS Human protein_coding chr3:98503827 chr3:98503826 stopgain 1.000 1 20 hm7G_associated_SNPs_16072 0 0 1 0 2 ST3GAL6 chr3:98503789 3'AG 98503789 Downstream 38bp 15344 chr3 98503826 98503826 1 + G T UCEC 98503827 + 98503807 98503847 41 TGTGGTGGTTGGTAATGGAGGAGTTTTGAAGAATAAGACAT TGTGGTGGTTGGTAATGGATGAGTTTTGAAGAATAAGACAT < 41bp 0.473500161259849 0.782816409446023 NA NA prediction 0.565632818892045 Functional Gain - ST3GAL6 ENSG00000064225 CDS Human protein_coding chr3:98503827 chr3:98503826 stopgain 1.000 1 20 hm7G_associated_SNPs_16072 0 0 1 0 2 ST3GAL6 chr3:98503884 5'GT 98503884 Upstream 59bp 15345 chr4 88583159 88583159 1 + G T UCEC 88583160 + 88583140 88583180 41 TCAGTCAGAGGAGGGCCTGGGCTCTGATGATCATCAATACA TCAGTCAGAGGAGGGCCTGTGCTCTGATGATCATCAATACA < 41bp 0.486429017478541 0.782795543162171 NA NA prediction 0.565591086324342 Functional Gain - DMP1 ENSG00000152592 CDS Human protein_coding chr4:88583160 chr4:88583159 nonsynonymous SNV 0.026 3 20 hm7G_associated_SNPs_16074 0 0 0 0 1 DMP1 chr4:88583114 3'AG 88583114 Downstream 46bp 15346 chr10 5415744 5415744 1 + G T UCEC 5415745 + 5415725 5415765 41 CCTGGGGGGCCCCAGGACAGGCCTCCCCCACAAGTTCTACA CCTGGGGGGCCCCAGGACATGCCTCCCCCACAAGTTCTACA < 41bp 0.556847945716951 0.83963864023305 NA NA prediction 0.565581389032199 Functional Gain - UCN3 ENSG00000178473 CDS Human protein_coding chr10:5415745 chr10:5415744 nonsynonymous SNV 0.096 2 20 hm7G_associated_SNPs_16075 0 0 0 0 1 UCN3 chr10:5415678 3'AG 5415678 Downstream 67bp 15347 chr22 42383628 42383628 1 + G T COAD 42383629 + 42383609 42383649 41 CTTTCCCTCCCCATCAGCTGGGAGCCCATTGAGAAGTACAT CTTTCCCTCCCCATCAGCTTGGAGCCCATTGAGAAGTACAT < 41bp 0.567018306765428 0.849803660272028 NA NA prediction 0.565570707013199 Functional Gain - SEPT3 ENSG00000100167 CDS Human protein_coding chr22:42383629 chr22:42383628 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_16076 0 0 0 0 1 SEPT3 chr22:42383626 3'AG 42383626 Downstream 3bp 15348 chr19 6848051 6848051 1 + G T LUAD 6848052 + 6848032 6848072 41 CAGGGGCAGAGAGCATCCTGGCCAACCGCTCGGACGGGACT CAGGGGCAGAGAGCATCCTTGCCAACCGCTCGGACGGGACT < 41bp 0.440784743074575 0.782774500289239 NA NA prediction 0.565549000578478 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6848052 chr19:6848051 synonymous SNV . 0 20 hm7G_associated_SNPs_16078 0 0 0 0 2 VAV1 chr19:6848009 3'AG 6848009 Downstream 43bp 15349 chr19 6848051 6848051 1 + G T LUAD 6848052 + 6848032 6848072 41 CAGGGGCAGAGAGCATCCTGGCCAACCGCTCGGACGGGACT CAGGGGCAGAGAGCATCCTTGCCAACCGCTCGGACGGGACT < 41bp 0.440784743074575 0.782774500289239 NA NA prediction 0.565549000578478 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6848052 chr19:6848051 synonymous SNV . 0 20 hm7G_associated_SNPs_16078 0 0 0 0 2 VAV1 chr19:6848125 5'GT 6848125 Upstream 75bp 15350 chr15 77763281 77763281 1 + G T COAD 77763282 + 77763262 77763302 41 ATGAAGCAGACAGAGATAAGGAGCGTTACATGAAGGAACTG ATGAAGCAGACAGAGATAATGAGCGTTACATGAAGGAACTG < 41bp 0.551081592272549 0.833850055909679 NA NA prediction 0.56553692727426 Functional Gain - HMG20A ENSG00000140382 CDS Human protein_coding chr15:77763282 chr15:77763281 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_16080 0 0 1 0 1 HMG20A chr15:77763252 3'AG 77763252 Downstream 30bp 15351 chr13 103519118 103519118 1 + G T HNSC 103519119 + 103519099 103519139 41 ATCTGGCTGTTTGGAGCGCGGCATGTCTATAGAAACTTTTT ATCTGGCTGTTTGGAGCGCTGCATGTCTATAGAAACTTTTT < 41bp 0.526786896480604 0.809551339223158 NA NA prediction 0.565528885485107 Functional Gain - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103519119 chr13:103519118 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16081 0 0 1 0 1 BIVM-ERCC5;ERCC5 chr13:103519195 5'GT 103519195 Upstream 78bp 15352 chr11 47282926 47282926 1 + G T STAD 47282927 + 47282907 47282947 41 GCTCAGCCCGGAACAACTGGGCATGATCGAGAAGCTCGTCG GCTCAGCCCGGAACAACTGTGCATGATCGAGAAGCTCGTCG < 41bp 0.44585001700543 0.782754461028805 NA NA prediction 0.565508922057609 Functional Gain - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47282927 chr11:47282926 nonsynonymous SNV 0.762 1 20 hm7G_associated_SNPs_16083 0 0 0 0 1 NR1H3 chr11:47283000 5'GT 47283000 Upstream 75bp 15353 chr8 26513217 26513217 1 + G T LUAD 26513218 + 26513198 26513238 41 TGCCAACATCACCAGCCTGGGCTAGAGCTCCTGGGCTGTGC TGCCAACATCACCAGCCTGTGCTAGAGCTCCTGGGCTGTGC < 41bp 0.547692406483971 0.830421665945319 NA NA prediction 0.565458518922696 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26513218 chr8:26513217 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_16085 0 0 1 0 1 DPYSL2 chr8:26513131 3'AG 26513131 Downstream 87bp 15354 chrX 56295863 56295863 1 + G T UCEC 56295864 + 56295844 56295884 41 AAATTCCAAGTGACAGTGAGGAGAGTACAATTGAGAGTGGA AAATTCCAAGTGACAGTGATGAGAGTACAATTGAGAGTGGA < 41bp 0.544643100630715 0.8273620411344 NA NA prediction 0.56543788100737 Functional Gain - KLF8 ENSG00000102349 CDS Human protein_coding chrX:56295864 chrX:56295863 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_16086 0 0 0 0 1 KLF8 chrX:56295811 3'AG 56295811 Downstream 53bp 15355 chr16 22262559 22262559 1 + G T UCEC 22262560 + 22262540 22262580 41 ACATCGAGCCCGTAGACCGGGATGTGTACTTTGAGGACGTG ACATCGAGCCCGTAGACCGTGATGTGTACTTTGAGGACGTG < 41bp 0.447381038648813 0.78269726555265 NA NA prediction 0.5653945311053 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22262560 chr16:22262559 synonymous SNV . 0 20 hm7G_associated_SNPs_16088 0 0 1 1 2 EEF2K chr16:22262472 3'AG 22262472 Downstream 88bp 15356 chr16 22262559 22262559 1 + G T UCEC 22262560 + 22262540 22262580 41 ACATCGAGCCCGTAGACCGGGATGTGTACTTTGAGGACGTG ACATCGAGCCCGTAGACCGTGATGTGTACTTTGAGGACGTG < 41bp 0.447381038648813 0.78269726555265 NA NA prediction 0.5653945311053 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22262560 chr16:22262559 synonymous SNV . 0 20 hm7G_associated_SNPs_16088 0 0 1 1 2 EEF2K chr16:22262643 5'GT 22262643 Upstream 85bp 15357 chr3 47449425 47449425 1 + G T UCEC 47449426 + 47449406 47449446 41 AGATGATGGCCAAGATTGAGGACAAGAATGAGGTCCTGGAG AGATGATGGCCAAGATTGATGACAAGAATGAGGTCCTGGAG < 41bp 0.449685125795396 0.782695861282095 NA NA prediction 0.56539172256419 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47449426 chr3:47449425 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_16090 0 0 1 0 2 PTPN23 chr3:47449380 3'AG 47449380 Downstream 46bp 15358 chr3 47449425 47449425 1 + G T UCEC 47449426 + 47449406 47449446 41 AGATGATGGCCAAGATTGAGGACAAGAATGAGGTCCTGGAG AGATGATGGCCAAGATTGATGACAAGAATGAGGTCCTGGAG < 41bp 0.449685125795396 0.782695861282095 NA NA prediction 0.56539172256419 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47449426 chr3:47449425 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_16090 0 0 1 0 2 PTPN23 chr3:47449445 5'GT 47449445 Upstream 21bp 15359 chr14 73420881 73420881 1 + G T LUSC 73420882 + 73420862 73420902 41 CCCTTAGCAGGAATAGACCGGCCTGGCATGCTCTGCAGTTT CCCTTAGCAGGAATAGACCTGCCTGGCATGCTCTGCAGTTT < 41bp 0.567336515816532 0.850012638280511 NA NA prediction 0.565352244927958 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73420882 chr14:73420881 nonsynonymous SNV 0.911 0 20 hm7G_associated_SNPs_16091 0 0 1 0 3 DCAF4 chr14:73420869 3'AG 73420869 Downstream 13bp 15360 chr14 73420881 73420881 1 + G T LUSC 73420882 + 73420862 73420902 41 CCCTTAGCAGGAATAGACCGGCCTGGCATGCTCTGCAGTTT CCCTTAGCAGGAATAGACCTGCCTGGCATGCTCTGCAGTTT < 41bp 0.567336515816532 0.850012638280511 NA NA prediction 0.565352244927958 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73420882 chr14:73420881 nonsynonymous SNV 0.911 0 20 hm7G_associated_SNPs_16091 0 0 1 0 3 DCAF4 chr14:73420872 3'AG 73420872 Downstream 10bp 15361 chr14 73420881 73420881 1 + G T LUSC 73420882 + 73420862 73420902 41 CCCTTAGCAGGAATAGACCGGCCTGGCATGCTCTGCAGTTT CCCTTAGCAGGAATAGACCTGCCTGGCATGCTCTGCAGTTT < 41bp 0.567336515816532 0.850012638280511 NA NA prediction 0.565352244927958 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73420882 chr14:73420881 nonsynonymous SNV 0.911 0 20 hm7G_associated_SNPs_16091 0 0 1 0 3 DCAF4 chr14:73420970 5'GT 73420970 Upstream 90bp 15362 chr3 118917949 118917949 1 + G T UCEC 118917950 + 118917930 118917970 41 AATGAACCGACACGCCTGGGGGGTTGCCTGGTTTGGATTTG AATGAACCGACACGCCTGGTGGGTTGCCTGGTTTGGATTTG < 41bp 0.559731016481651 0.842399754055215 NA NA prediction 0.565337475147128 Functional Gain - UPK1B ENSG00000114638 CDS Human protein_coding chr3:118917950 chr3:118917949 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16094 0 0 0 0 2 UPK1B chr3:118917904 3'AG 118917904 Downstream 46bp 15363 chr3 118917949 118917949 1 + G T UCEC 118917950 + 118917930 118917970 41 AATGAACCGACACGCCTGGGGGGTTGCCTGGTTTGGATTTG AATGAACCGACACGCCTGGTGGGTTGCCTGGTTTGGATTTG < 41bp 0.559731016481651 0.842399754055215 NA NA prediction 0.565337475147128 Functional Gain - UPK1B ENSG00000114638 CDS Human protein_coding chr3:118917950 chr3:118917949 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16094 0 0 0 0 2 UPK1B chr3:118917987 5'GT 118917987 Upstream 39bp 15364 chr7 138872202 138872202 1 + G T LUSC 138872203 + 138872183 138872223 41 TTGATGTCCTTGAGAGGCTGGATCCTAACCCTGAATATTGG TTGATGTCCTTGAGAGGCTTGATCCTAACCCTGAATATTGG < 41bp 0.545236413426605 0.827902499870804 NA NA prediction 0.565332172888399 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138872203 chr7:138872202 synonymous SNV . 0 20 hm7G_associated_SNPs_16095 0 0 0 0 2 TTC26 chr7:138872152 3'AG 138872152 Downstream 51bp 15365 chr7 138872202 138872202 1 + G T LUSC 138872203 + 138872183 138872223 41 TTGATGTCCTTGAGAGGCTGGATCCTAACCCTGAATATTGG TTGATGTCCTTGAGAGGCTTGATCCTAACCCTGAATATTGG < 41bp 0.545236413426605 0.827902499870804 NA NA prediction 0.565332172888399 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138872203 chr7:138872202 synonymous SNV . 0 20 hm7G_associated_SNPs_16095 0 0 0 0 2 TTC26 chr7:138872285 5'GT 138872285 Upstream 84bp 15366 chr6 42146021 42146021 1 + G T rs146354667 42146022 + 42146002 42146042 41 CGCGCCCCTCGCCCAGGACGGCTACATTGATTTCATGGAGT CGCGCCCCTCGCCCAGGACTGCTACATTGATTTCATGGAGT < 41bp 0.464680524597732 0.782660704214273 NA NA prediction 0.565321408428546 Functional Gain - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42146022 chr6:42146021 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_16096 1 0 0 0 1 GUCA1A chr6:42146018 3'AG 42146018 Downstream 4bp 15367 chr12 7354881 7354881 1 + G T BLCA 7354882 + 7354862 7354902 41 GCGAAGGGCAGGTGTCCCTGGAGTCCGGTGCAGGGTCGGGC GCGAAGGGCAGGTGTCCCTTGAGTCCGGTGCAGGGTCGGGC < 41bp 0.582475719319645 0.865124701913598 NA NA prediction 0.565297965187906 Functional Gain - PEX5 ENSG00000139197 CDS Human protein_coding chr12:7354882 chr12:7354881 synonymous SNV . 0 20 hm7G_associated_SNPs_16097 0 0 0 0 2 PEX5 chr12:7354837 3'AG 7354837 Downstream 45bp 15368 chr12 7354881 7354881 1 + G T BLCA 7354882 + 7354862 7354902 41 GCGAAGGGCAGGTGTCCCTGGAGTCCGGTGCAGGGTCGGGC GCGAAGGGCAGGTGTCCCTTGAGTCCGGTGCAGGGTCGGGC < 41bp 0.582475719319645 0.865124701913598 NA NA prediction 0.565297965187906 Functional Gain - PEX5 ENSG00000139197 CDS Human protein_coding chr12:7354882 chr12:7354881 synonymous SNV . 0 20 hm7G_associated_SNPs_16097 0 0 0 0 2 PEX5 chr12:7354947 5'GT 7354947 Upstream 67bp 15369 chrX 30714250 30714250 1 + G T UCEC 30714251 + 30714231 30714271 41 AACATTCATTCTTTGGAATGGGATAAACAACTCTGCGAGTA AACATTCATTCTTTGGAATTGGATAAACAACTCTGCGAGTA < 41bp 0.522128448102616 0.804766366076022 NA NA prediction 0.565275835946813 Functional Gain - GK ENSG00000198814 CDS Human protein_coding chrX:30714251 chrX:30714250 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16101 0 0 1 0 1 GK chrX:30714268 5'GT 30714268 Upstream 19bp 15370 chr1 241725627 241725627 1 + G T LUAD 241725628 + 241725608 241725648 41 GACTATTCCACCTAAGAACGGAGATGTAAGTCCTTGCCCTT GACTATTCCACCTAAGAACTGAGATGTAAGTCCTTGCCCTT < 41bp 0.472880599665414 0.782633677935937 NA NA prediction 0.565267355871875 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241725628 chr1:241725627 stopgain 0.427 1 20 hm7G_associated_SNPs_16102 0 0 0 0 1 KMO chr1:241725632 5'GT 241725632 Upstream 6bp 15371 chr8 27382882 27382882 1 + G T LIHC 27382883 + 27382863 27382903 41 CCTCTTATTTCTGTAGGGCGGTGGCCAGTTTGAATACTCCC CCTCTTATTTCTGTAGGGCTGTGGCCAGTTTGAATACTCCC < 41bp 0.548694049875278 0.831327474596951 NA NA prediction 0.565266849443346 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27382883 chr8:27382882 synonymous SNV . 0 20 hm7G_associated_SNPs_16103 0 0 1 0 1 EPHX2 chr8:27382879 3'AG 27382879 Downstream 4bp 15372 chr6 24503613 24503613 1 + G T LUAD 24503614 + 24503594 24503634 41 CCCCGGCAAAGGACAGGCGGGCCCTGGTCCTCAAGCAGCCC CCCCGGCAAAGGACAGGCGTGCCCTGGTCCTCAAGCAGCCC < 41bp 0.586029273408644 0.868625011715922 NA NA prediction 0.565191476614556 Functional Gain - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24503614 chr6:24503613 synonymous SNV . 0 20 hm7G_associated_SNPs_16108 0 0 1 0 1 ALDH5A1 chr6:24503661 5'GT 24503661 Upstream 49bp 15373 chr5 161116293 161116293 1 + G T LUAD 161116294 + 161116274 161116314 41 CTGACTGTCCCATGAGGCTGGTTAACTTTCCTATGGATGGG CTGACTGTCCCATGAGGCTTGTTAACTTTCCTATGGATGGG < 41bp 0.543955517410486 0.82654154434248 NA NA prediction 0.565172053863989 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116294 chr5:161116293 synonymous SNV . 0 20 hm7G_associated_SNPs_16109 0 0 0 0 2 GABRA6 chr5:161116260 3'AG 161116260 Downstream 34bp 15374 chr5 161116293 161116293 1 + G T LUAD 161116294 + 161116274 161116314 41 CTGACTGTCCCATGAGGCTGGTTAACTTTCCTATGGATGGG CTGACTGTCCCATGAGGCTTGTTAACTTTCCTATGGATGGG < 41bp 0.543955517410486 0.82654154434248 NA NA prediction 0.565172053863989 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116294 chr5:161116293 synonymous SNV . 0 20 hm7G_associated_SNPs_16109 0 0 0 0 2 GABRA6 chr5:161116342 5'GT 161116342 Upstream 50bp 15375 chr8 67364273 67364273 1 + G T LUAD 67364274 + 67364254 67364294 41 CACACGGCCTGCGTACCAGGGCAGCAACCCAATCAGTGACA CACACGGCCTGCGTACCAGTGCAGCAACCCAATCAGTGACA < 41bp 0.451361743938154 0.78255569104784 NA NA prediction 0.565111382095679 Functional Gain - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67364274 chr8:67364273 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_16110 0 0 0 1 2 ADHFE1 chr8:67364188 3'AG 67364188 Downstream 86bp 15376 chr8 67364273 67364273 1 + G T LUAD 67364274 + 67364254 67364294 41 CACACGGCCTGCGTACCAGGGCAGCAACCCAATCAGTGACA CACACGGCCTGCGTACCAGTGCAGCAACCCAATCAGTGACA < 41bp 0.451361743938154 0.78255569104784 NA NA prediction 0.565111382095679 Functional Gain - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67364274 chr8:67364273 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_16110 0 0 0 1 2 ADHFE1 chr8:67364340 5'GT 67364340 Upstream 68bp 15377 chr19 50957574 50957574 1 + G T UCEC 50957575 + 50957555 50957595 41 CCTCGGTTGGAGAGGATTGGGCCATCCTTGTCTGGGAGCCA CCTCGGTTGGAGAGGATTGTGCCATCCTTGTCTGGGAGCCA < 41bp 0.439087173244783 0.782552069265646 NA NA prediction 0.565104138531292 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957575 chr19:50957574 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_16111 0 0 0 0 2 MYBPC2 chr19:50957522 3'AG 50957522 Downstream 53bp 15378 chr19 50957574 50957574 1 + G T UCEC 50957575 + 50957555 50957595 41 CCTCGGTTGGAGAGGATTGGGCCATCCTTGTCTGGGAGCCA CCTCGGTTGGAGAGGATTGTGCCATCCTTGTCTGGGAGCCA < 41bp 0.439087173244783 0.782552069265646 NA NA prediction 0.565104138531292 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957575 chr19:50957574 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_16111 0 0 0 0 2 MYBPC2 chr19:50957626 5'GT 50957626 Upstream 53bp 15379 chr17 4352620 4352620 1 + G T ESCA 4352621 + 4352601 4352641 41 CCCCCAAGTTTCTGCTCGAGGCACGCGTGGTTCACGGGCTG CCCCCAAGTTTCTGCTCGATGCACGCGTGGTTCACGGGCTG < 41bp 0.576422297308923 0.858964040395747 NA NA prediction 0.565083486173649 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352621 chr17:4352620 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_16113 0 0 0 0 2 SPNS3 chr17:4352530 3'AG 4352530 Downstream 91bp 15380 chr17 4352620 4352620 1 + G T ESCA 4352621 + 4352601 4352641 41 CCCCCAAGTTTCTGCTCGAGGCACGCGTGGTTCACGGGCTG CCCCCAAGTTTCTGCTCGATGCACGCGTGGTTCACGGGCTG < 41bp 0.576422297308923 0.858964040395747 NA NA prediction 0.565083486173649 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352621 chr17:4352620 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_16113 0 0 0 0 2 SPNS3 chr17:4352682 5'GT 4352682 Upstream 63bp 15381 chr21 27141328 27141328 1 + G T LUAD 27141329 + 27141309 27141349 41 TTGAAGATATTATTACGATGGGGACATGATTTGTAAAGTTC TTGAAGATATTATTACGATTGGGACATGATTTGTAAAGTTC < 41bp 0.500580921270102 0.783108651447829 NA NA prediction 0.565055460355453 Functional Gain - GABPA ENSG00000154727 CDS Human protein_coding chr21:27141329 chr21:27141328 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16114 0 0 1 0 1 GABPA chr21:27141315 3'AG 27141315 Downstream 14bp 15382 chrX 153171077 153171077 1 + G T UCEC 153171078 + 153171058 153171098 41 ACCCGCTGCTAGCCCGGGCGGAGCTGGCGCTGCTCTCCATA ACCCGCTGCTAGCCCGGGCTGAGCTGGCGCTGCTCTCCATA < 41bp 0.555544863106811 0.838065613398952 NA NA prediction 0.565041500584282 Functional Gain - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153171078 chrX:153171077 synonymous SNV . 0 20 hm7G_associated_SNPs_16116 0 0 1 0 1 AVPR2 chrX:153170986 3'AG 153170986 Downstream 92bp 15383 chr2 101874386 101874386 1 + G T HNSC 101874387 + 101874367 101874407 41 GAAACATGGGCCAGTCTGTGGACATTAGTGGGCTTCAGTTA GAAACATGGGCCAGTCTGTTGACATTAGTGGGCTTCAGTTA < 41bp 0.564289185634937 0.846806606479019 NA NA prediction 0.565034841688163 Functional Gain - CNOT11 ENSG00000158435 CDS Human protein_coding chr2:101874387 chr2:101874386 synonymous SNV . 0 20 hm7G_associated_SNPs_16117 0 0 1 0 1 CNOT11 chr2:101874417 5'GT 101874417 Upstream 32bp 15384 chr16 54967062 54967062 1 + G T MESO 54967063 + 54967043 54967083 41 CCCCTGCAGGCAAGGAGACGGAGGGCAGCCTCAGCGACTCG CCCCTGCAGGCAAGGAGACTGAGGGCAGCCTCAGCGACTCG < 41bp 0.551238645059066 0.833755366301595 NA NA prediction 0.565033442485058 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54967063 chr16:54967062 synonymous SNV . 0 20 hm7G_associated_SNPs_16118 0 0 0 0 2 IRX5 chr16:54966989 3'AG 54966989 Downstream 74bp 15385 chr16 54967062 54967062 1 + G T MESO 54967063 + 54967043 54967083 41 CCCCTGCAGGCAAGGAGACGGAGGGCAGCCTCAGCGACTCG CCCCTGCAGGCAAGGAGACTGAGGGCAGCCTCAGCGACTCG < 41bp 0.551238645059066 0.833755366301595 NA NA prediction 0.565033442485058 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54967063 chr16:54967062 synonymous SNV . 0 20 hm7G_associated_SNPs_16118 0 0 0 0 2 IRX5 chr16:54966992 3'AG 54966992 Downstream 71bp 15386 chr7 64852831 64852831 1 + G T UCEC 64852832 + 64852812 64852852 41 CAGGGACCACTGACATTTAGGGATGTGAAAATAGAATTCTC CAGGGACCACTGACATTTATGGATGTGAAAATAGAATTCTC < 41bp 0.477404732560279 0.782507500619267 NA NA prediction 0.565015001238534 Functional Gain - ZNF92 ENSG00000146757 CDS Human protein_coding chr7:64852832 chr7:64852831 nonsynonymous SNV 0.798 0 20 hm7G_associated_SNPs_16120 0 0 1 0 1 ZNF92 chr7:64852815 3'AG 64852815 Downstream 17bp 15387 chr1 67091552 67091552 1 + G T UCEC 67091553 + 67091533 67091573 41 TGAAAAAACGTACAAGGAAGGCCTTTGGAATACGGAAGAAA TGAAAAAACGTACAAGGAATGCCTTTGGAATACGGAAGAAA < 41bp 0.475542673399885 0.782501210543172 NA NA prediction 0.565002421086345 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67091553 chr1:67091552 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16122 0 0 0 0 2 SGIP1 chr1:67091530 3'AG 67091530 Downstream 23bp 15388 chr1 67091552 67091552 1 + G T UCEC 67091553 + 67091533 67091573 41 TGAAAAAACGTACAAGGAAGGCCTTTGGAATACGGAAGAAA TGAAAAAACGTACAAGGAATGCCTTTGGAATACGGAAGAAA < 41bp 0.475542673399885 0.782501210543172 NA NA prediction 0.565002421086345 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67091553 chr1:67091552 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16122 0 0 0 0 2 SGIP1 chr1:67091593 5'GT 67091593 Upstream 42bp 15389 chr3 24018780 24018780 1 + G T UCEC 24018781 + 24018761 24018801 41 ACTCTCATTCGTGCACTAAGGACCTTAATAATGAAAAACCA ACTCTCATTCGTGCACTAATGACCTTAATAATGAAAAACCA < 41bp 0.516097269845148 0.798598320190296 NA NA prediction 0.565002100690296 Functional Gain - NR1D2 ENSG00000174738 CDS Human protein_coding chr3:24018781 chr3:24018780 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_16123 0 0 1 0 1 NR1D2 chr3:24018714 3'AG 24018714 Downstream 67bp 15390 chr2 179255841 179255841 1 + G T LUSC 179255842 + 179255822 179255862 41 TGAATGAAGTCCAGGGGGTGGTGATAGATCAGGAGGGGAAG TGAATGAAGTCCAGGGGGTTGTGATAGATCAGGAGGGGAAG < 41bp 0.535029820876173 0.817530715269148 NA NA prediction 0.56500178878595 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179255842 chr2:179255841 synonymous SNV . 0 20 hm7G_associated_SNPs_16124 0 0 0 0 1 OSBPL6 chr2:179255800 3'AG 179255800 Downstream 42bp 15391 chr1 203689767 203689767 1 + G T COAD 203689768 + 203689748 203689788 41 TGTGAAGGCAGTGATGTGGGGACGAAATGTCTATGACAGCA TGTGAAGGCAGTGATGTGGTGACGAAATGTCTATGACAGCA < 41bp 0.462441961147347 0.782488481119036 NA NA prediction 0.564976962238073 Functional Gain - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203689768 chr1:203689767 stopgain 0.987 0 20 hm7G_associated_SNPs_16126 0 0 1 0 1 ATP2B4 chr1:203689677 3'AG 203689677 Downstream 91bp 15392 chr19 41009825 41009825 1 + G T LUAD 41009826 + 41009806 41009846 41 ATTGCGGCCTACGAGGAGCGGGTGCAGGGTGTGGCGGAGCT ATTGCGGCCTACGAGGAGCTGGTGCAGGGTGTGGCGGAGCT < 41bp 0.461843647376374 0.782480714148359 NA NA prediction 0.564961428296717 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41009826 chr19:41009825 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_16127 0 0 0 0 1 SPTBN4 chr19:41009737 3'AG 41009737 Downstream 89bp 15393 chr10 71685584 71685584 1 + G T UCEC 71685585 + 71685565 71685605 41 CAAGGGAGAACCAGGGAAAGGAGAGATGGTGGATTACAATG CAAGGGAGAACCAGGGAAATGAGAGATGGTGGATTACAATG < 41bp 0.464012051226302 0.782474343704376 NA NA prediction 0.564948687408753 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71685585 chr10:71685584 stopgain 0.910 0 20 hm7G_associated_SNPs_16128 0 0 0 0 2 COL13A1 chr10:71685560 3'AG 71685560 Downstream 25bp 15394 chr10 71685584 71685584 1 + G T UCEC 71685585 + 71685565 71685605 41 CAAGGGAGAACCAGGGAAAGGAGAGATGGTGGATTACAATG CAAGGGAGAACCAGGGAAATGAGAGATGGTGGATTACAATG < 41bp 0.464012051226302 0.782474343704376 NA NA prediction 0.564948687408753 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71685585 chr10:71685584 stopgain 0.910 0 20 hm7G_associated_SNPs_16128 0 0 0 0 2 COL13A1 chr10:71685628 5'GT 71685628 Upstream 45bp 15395 chr11 114272437 114272437 1 + G T UCEC 114272438 + 114272418 114272458 41 AGGCTGGGCCAGTAATAAAGGTGAAAATTCCAAAAGATAAG AGGCTGGGCCAGTAATAAATGTGAAAATTCCAAAAGATAAG < 41bp 0.510397483119509 0.792868115908989 NA NA prediction 0.564941265578959 Functional Gain - RBM7 ENSG00000076053;ENSG00000255663 CDS Human other chr11:114272438 chr11:114272437 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_16131 0 0 1 0 1 RBM7 chr11:114272420 3'AG 114272420 Downstream 18bp 15396 chr11 60699188 60699188 1 + G T LUAD 60699189 + 60699169 60699209 41 AACTGTCTGAGTTCCTATGGGTGGACTTTGTGGTGGAGAAT AACTGTCTGAGTTCCTATGTGTGGACTTTGTGGTGGAGAAT < 41bp 0.538739331069007 0.821204760057277 NA NA prediction 0.56493085797654 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699189 chr11:60699188 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_16133 0 0 1 0 2 TMEM132A chr11:60699158 3'AG 60699158 Downstream 31bp 15397 chr11 60699188 60699188 1 + G T LUAD 60699189 + 60699169 60699209 41 AACTGTCTGAGTTCCTATGGGTGGACTTTGTGGTGGAGAAT AACTGTCTGAGTTCCTATGTGTGGACTTTGTGGTGGAGAAT < 41bp 0.538739331069007 0.821204760057277 NA NA prediction 0.56493085797654 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699189 chr11:60699188 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_16133 0 0 1 0 2 TMEM132A chr11:60699161 3'AG 60699161 Downstream 28bp 15398 chr9 100361935 100361935 1 + G T SKCM 100361936 + 100361916 100361956 41 TGAGGAAGAGGAGGCTTGCGGACCTGACTGGGCCCATCATT TGAGGAAGAGGAGGCTTGCTGACCTGACTGGGCCCATCATT < 41bp 0.488605238026221 0.782452524431839 NA NA prediction 0.564905048863678 Functional Gain - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100361936 chr9:100361935 synonymous SNV . 0 20 hm7G_associated_SNPs_16134 0 0 1 0 1 TMOD1 chr9:100361916 3'AG 100361916 Downstream 20bp 15399 chr3 69987131 69987131 1 + G T LUAD 69987132 + 69987112 69987152 41 GCGATCATGTCATGCCACCGGTGCCGGGGAGCAGCGCACCC GCGATCATGTCATGCCACCTGTGCCGGGGAGCAGCGCACCC < 41bp 0.556030794520996 0.838475068764888 NA NA prediction 0.564888548487782 Functional Gain - MITF ENSG00000187098 CDS Human protein_coding chr3:69987132 chr3:69987131 synonymous SNV . 0 20 hm7G_associated_SNPs_16137 0 0 1 0 1 MITF chr3:69987200 5'GT 69987200 Upstream 70bp 15400 chrX 48116711 48116711 1 + G T LGG 48116712 + 48116692 48116732 41 ACCTTTGCAAAGAGACCCAGGGATGATGCTAAAGCATCAGA ACCTTTGCAAAGAGACCCATGGATGATGCTAAAGCATCAGA < 41bp 0.561803002606028 0.844227266919928 NA NA prediction 0.564848528627799 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48116712 chrX:48116711 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_16138 0 0 1 0 2 SSX1 chrX:48116657 3'AG 48116657 Downstream 55bp 15401 chrX 48116711 48116711 1 + G T LGG 48116712 + 48116692 48116732 41 ACCTTTGCAAAGAGACCCAGGGATGATGCTAAAGCATCAGA ACCTTTGCAAAGAGACCCATGGATGATGCTAAAGCATCAGA < 41bp 0.561803002606028 0.844227266919928 NA NA prediction 0.564848528627799 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48116712 chrX:48116711 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_16138 0 0 1 0 2 SSX1 chrX:48116745 5'GT 48116745 Upstream 35bp 15402 chr15 42137429 42137429 1 + G T HNSC 42137430 + 42137410 42137450 41 CACAAGCTCTCAGATCAACGGGAGGCCCTGAGTCATGGCCA CACAAGCTCTCAGATCAACTGGAGGCCCTGAGTCATGGCCA < 41bp 0.576780682956845 0.859204032465664 NA NA prediction 0.564846699017639 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42137430 chr15:42137429 nonsynonymous SNV 0.975 3 20 hm7G_associated_SNPs_16139 0 0 0 0 2 JMJD7-PLA2G4B;PLA2G4B chr15:42137401 3'AG 42137401 Downstream 29bp 15403 chr15 42137429 42137429 1 + G T HNSC 42137430 + 42137410 42137450 41 CACAAGCTCTCAGATCAACGGGAGGCCCTGAGTCATGGCCA CACAAGCTCTCAGATCAACTGGAGGCCCTGAGTCATGGCCA < 41bp 0.576780682956845 0.859204032465664 NA NA prediction 0.564846699017639 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42137430 chr15:42137429 nonsynonymous SNV 0.975 3 20 hm7G_associated_SNPs_16139 0 0 0 0 2 JMJD7-PLA2G4B;PLA2G4B chr15:42137518 5'GT 42137518 Upstream 90bp 15404 chr11 64939415 64939415 1 + G T SARC 64939416 + 64939396 64939436 41 TGTCTTCTCTACCCTCAGAGGACAGTTTTGTCCAGGAATTC TGTCTTCTCTACCCTCAGATGACAGTTTTGTCCAGGAATTC < 41bp 0.463809832513322 0.782410940609152 NA NA prediction 0.564821881218303 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64939416 chr11:64939415 nonsynonymous SNV 0.637 1 20 hm7G_associated_SNPs_16140 0 0 0 0 2 SPDYC chr11:64939414 3'AG 64939414 Downstream 2bp 15405 chr11 64939415 64939415 1 + G T SARC 64939416 + 64939396 64939436 41 TGTCTTCTCTACCCTCAGAGGACAGTTTTGTCCAGGAATTC TGTCTTCTCTACCCTCAGATGACAGTTTTGTCCAGGAATTC < 41bp 0.463809832513322 0.782410940609152 NA NA prediction 0.564821881218303 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64939416 chr11:64939415 nonsynonymous SNV 0.637 1 20 hm7G_associated_SNPs_16140 0 0 0 0 2 SPDYC chr11:64939472 5'GT 64939472 Upstream 58bp 15406 chrX 105193617 105193617 1 + G T BLCA 105193618 + 105193598 105193638 41 TCATTTTACCTGATTGCTTGGGAATTGGCATGATGCTCACC TCATTTTACCTGATTGCTTTGGAATTGGCATGATGCTCACC < 41bp 0.558351108173764 0.840758082150427 NA NA prediction 0.564813947953325 Functional Gain - NRK ENSG00000123572 CDS Human protein_coding chrX:105193618 chrX:105193617 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16141 0 0 0 0 2 NRK chrX:105193567 3'AG 105193567 Downstream 51bp 15407 chrX 105193617 105193617 1 + G T BLCA 105193618 + 105193598 105193638 41 TCATTTTACCTGATTGCTTGGGAATTGGCATGATGCTCACC TCATTTTACCTGATTGCTTTGGAATTGGCATGATGCTCACC < 41bp 0.558351108173764 0.840758082150427 NA NA prediction 0.564813947953325 Functional Gain - NRK ENSG00000123572 CDS Human protein_coding chrX:105193618 chrX:105193617 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16141 0 0 0 0 2 NRK chrX:105193591 3'AG 105193591 Downstream 27bp 15408 chr6 96997381 96997381 1 + G T LUAD 96997382 + 96997362 96997402 41 GCAGAAAACGCACAATCAAGGACTTGCAAGAAGAAGTTTCA GCAGAAAACGCACAATCAATGACTTGCAAGAAGAAGTTTCA < 41bp 0.532238910053 0.814645814861374 NA NA prediction 0.564813809616748 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96997382 chr6:96997381 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16142 0 0 1 0 2 UFL1 chr6:96997288 3'AG 96997288 Downstream 94bp 15409 chr6 96997381 96997381 1 + G T LUAD 96997382 + 96997362 96997402 41 GCAGAAAACGCACAATCAAGGACTTGCAAGAAGAAGTTTCA GCAGAAAACGCACAATCAATGACTTGCAAGAAGAAGTTTCA < 41bp 0.532238910053 0.814645814861374 NA NA prediction 0.564813809616748 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96997382 chr6:96997381 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16142 0 0 1 0 2 UFL1 chr6:96997454 5'GT 96997454 Upstream 74bp 15410 chr19 36557325 36557325 1 + G T LUAD 36557326 + 36557306 36557346 41 GTGCTCAACGTCTGGGACTGGAAGGTAAGAGCCGACCAGCA GTGCTCAACGTCTGGGACTTGAAGGTAAGAGCCGACCAGCA < 41bp 0.460751988931144 0.782389600981736 NA NA prediction 0.564779201963473 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36557326 chr19:36557325 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16143 0 0 1 0 1 WDR62 chr19:36557329 5'GT 36557329 Upstream 5bp 15411 chr5 31299666 31299666 1 + G T UCEC 31299667 + 31299647 31299687 41 TATGGGCGGCCAGATGGGAGGATTATCTGGGACCACCACCG TATGGGCGGCCAGATGGGATGATTATCTGGGACCACCACCG < 41bp 0.462969147649132 0.782385135375166 NA NA prediction 0.564770270750332 Functional Gain - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31299667 chr5:31299666 stopgain 0.999 1 20 hm7G_associated_SNPs_16144 0 0 0 0 1 CDH6 chr5:31299571 3'AG 31299571 Downstream 96bp 15412 chr6 170159125 170159125 1 + G T LIHC 170159126 + 170159106 170159146 41 AACCTGCGTAACGTCTTATGGCATGGGTTTGCGTCACCTGA AACCTGCGTAACGTCTTATTGCATGGGTTTGCGTCACCTGA < 41bp 0.540206795246375 0.822591368757709 NA NA prediction 0.564769147022668 Functional Gain - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170159126 chr6:170159125 nonsynonymous SNV 0.874 4 20 hm7G_associated_SNPs_16145 0 0 1 0 2 ERMARD chr6:170159064 3'AG 170159064 Downstream 62bp 15413 chr6 170159125 170159125 1 + G T LIHC 170159126 + 170159106 170159146 41 AACCTGCGTAACGTCTTATGGCATGGGTTTGCGTCACCTGA AACCTGCGTAACGTCTTATTGCATGGGTTTGCGTCACCTGA < 41bp 0.540206795246375 0.822591368757709 NA NA prediction 0.564769147022668 Functional Gain - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170159126 chr6:170159125 nonsynonymous SNV 0.874 4 20 hm7G_associated_SNPs_16145 0 0 1 0 2 ERMARD chr6:170159161 5'GT 170159161 Upstream 37bp 15414 chr11 55653690 55653690 1 + G T LUAD 55653691 + 55653671 55653711 41 ACCACAAGAACCAGATGCTGGAAGGTTAGTACCGTATGACT ACCACAAGAACCAGATGCTTGAAGGTTAGTACCGTATGACT < 41bp 0.484651864288251 0.782370089136076 NA NA prediction 0.564740178272152 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653691 chr11:55653690 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_16147 0 0 0 0 2 TRIM51 chr11:55653599 3'AG 55653599 Downstream 92bp 15415 chr11 55653690 55653690 1 + G T LUAD 55653691 + 55653671 55653711 41 ACCACAAGAACCAGATGCTGGAAGGTTAGTACCGTATGACT ACCACAAGAACCAGATGCTTGAAGGTTAGTACCGTATGACT < 41bp 0.484651864288251 0.782370089136076 NA NA prediction 0.564740178272152 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653691 chr11:55653690 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_16147 0 0 0 0 2 TRIM51 chr11:55653694 5'GT 55653694 Upstream 5bp 15416 chr12 72091298 72091298 1 + G T COAD 72091299 + 72091279 72091319 41 CAAGACTGATAACAACCTGGGAGAAAGTTCCAGTTGGTGAG CAAGACTGATAACAACCTGTGAGAAAGTTCCAGTTGGTGAG < 41bp 0.480124651828981 0.782367935552738 NA NA prediction 0.564735871105477 Functional Gain - TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72091299 chr12:72091298 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16148 0 0 0 0 1 TMEM19 chr12:72091314 5'GT 72091314 Upstream 17bp 15417 chr2 159922459 159922459 1 + G T UCEC 159922460 + 159922440 159922480 41 GAAGAAGAGCCGAGAGGGAGGAAAGGGAGGCAAGAAGGAAG GAAGAAGAGCCGAGAGGGATGAAAGGGAGGCAAGAAGGAAG < 41bp 0.555211705841667 0.837569801748709 NA NA prediction 0.564716191814084 Functional Gain - TANC1 ENSG00000115183 CDS Human protein_coding chr2:159922460 chr2:159922459 stopgain 1.000 1 20 hm7G_associated_SNPs_16150 0 0 1 0 1 TANC1 chr2:159922483 5'GT 159922483 Upstream 25bp 15418 chr6 142510591 142510591 1 + G T UCEC 142510592 + 142510572 142510612 41 CACAGGAAGTATGCCAGATGGAAGGCAACATACATCCATAA CACAGGAAGTATGCCAGATTGAAGGCAACATACATCCATAA < 41bp 0.536928271838518 0.819284664876666 NA NA prediction 0.564712786076294 Functional Gain - VTA1 ENSG00000009844 CDS Human protein_coding chr6:142510592 chr6:142510591 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16151 0 0 1 1 2 VTA1 chr6:142510563 3'AG 142510563 Downstream 29bp 15419 chr6 142510591 142510591 1 + G T UCEC 142510592 + 142510572 142510612 41 CACAGGAAGTATGCCAGATGGAAGGCAACATACATCCATAA CACAGGAAGTATGCCAGATTGAAGGCAACATACATCCATAA < 41bp 0.536928271838518 0.819284664876666 NA NA prediction 0.564712786076294 Functional Gain - VTA1 ENSG00000009844 CDS Human protein_coding chr6:142510592 chr6:142510591 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16151 0 0 1 1 2 VTA1 chr6:142510671 5'GT 142510671 Upstream 81bp 15420 chr7 48081045 48081045 1 + G T UCEC 48081046 + 48081026 48081066 41 CACAGCGAGAACCTGCCTGGGACTCGGAGATACTGGATAAA CACAGCGAGAACCTGCCTGTGACTCGGAGATACTGGATAAA < 41bp 0.460954734305073 0.782354210897954 NA NA prediction 0.564708421795908 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48081046 chr7:48081045 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16152 0 0 0 0 1 C7orf57 chr7:48081116 5'GT 48081116 Upstream 72bp 15421 chr7 63709511 63709511 1 + G T LUSC 63709512 + 63709492 63709532 41 ATTTATGGCTAAAAGACCGGGATCCCCTGGAAGCCGAGAAA ATTTATGGCTAAAAGACCGTGATCCCCTGGAAGCCGAGAAA < 41bp 0.481554804389636 0.782351400289677 NA NA prediction 0.564702800579354 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63709512 chr7:63709511 stopgain 0.000 0 20 hm7G_associated_SNPs_16153 0 0 0 0 1 ZNF679 chr7:63709534 5'GT 63709534 Upstream 24bp 15422 chr1 78383701 78383701 1 + G T COAD 78383702 + 78383682 78383722 41 TATCTTCTAAAGTAGAAAAGGCTTATGTTCCAAAATTAACA TATCTTCTAAAGTAGAAAATGCTTATGTTCCAAAATTAACA < 41bp 0.486772520968248 0.782349525202287 NA NA prediction 0.564699050404573 Functional Gain - NEXN ENSG00000162614 CDS Human protein_coding chr1:78383702 chr1:78383701 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_16155 0 0 0 0 1 NEXN chr1:78383723 5'GT 78383723 Upstream 23bp 15423 chrX 118151510 118151510 1 + G T ACC 118151511 + 118151491 118151531 41 GTTGCAGATGAACCCGAATGGCCCAGCCTGGTGCTGGTGGA GTTGCAGATGAACCCGAATTGCCCAGCCTGGTGCTGGTGGA < 41bp 0.55322062177262 0.83556988931301 NA NA prediction 0.56469853508078 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118151511 chrX:118151510 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16156 0 0 0 0 1 LONRF3 chrX:118151498 3'AG 118151498 Downstream 13bp 15424 chr19 11941183 11941183 1 + G T STAD 11941184 + 11941164 11941204 41 TCCCAGAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTT TCCCAGAGGAAACTCTACATGGAAGTGATGCTGGAAACTTT < 41bp 0.527447026318061 0.809772325553084 NA NA prediction 0.564650598470046 Functional Gain - ZNF440 ENSG00000171295 CDS Human protein_coding chr19:11941184 chr19:11941183 nonsynonymous SNV 0.818 3 20 hm7G_associated_SNPs_16159 0 0 0 0 2 ZNF440 chr19:11941098 3'AG 11941098 Downstream 86bp 15425 chr19 11941183 11941183 1 + G T STAD 11941184 + 11941164 11941204 41 TCCCAGAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTT TCCCAGAGGAAACTCTACATGGAAGTGATGCTGGAAACTTT < 41bp 0.527447026318061 0.809772325553084 NA NA prediction 0.564650598470046 Functional Gain - ZNF440 ENSG00000171295 CDS Human protein_coding chr19:11941184 chr19:11941183 nonsynonymous SNV 0.818 3 20 hm7G_associated_SNPs_16159 0 0 0 0 2 ZNF440 chr19:11941224 5'GT 11941224 Upstream 42bp 15426 chr16 31422715 31422715 1 + G T UCEC 31422716 + 31422696 31422736 41 CAGCCCTGACAGTGTTGGGGGATGTGAATGAGGACAAGCTG CAGCCCTGACAGTGTTGGGTGATGTGAATGAGGACAAGCTG < 41bp 0.576192801941711 0.858510032180195 NA NA prediction 0.564634460476968 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422716 chr16:31422715 synonymous SNV . 0 20 hm7G_associated_SNPs_16160 0 0 0 0 2 ITGAD chr16:31422626 3'AG 31422626 Downstream 90bp 15427 chr16 31422715 31422715 1 + G T UCEC 31422716 + 31422696 31422736 41 CAGCCCTGACAGTGTTGGGGGATGTGAATGAGGACAAGCTG CAGCCCTGACAGTGTTGGGTGATGTGAATGAGGACAAGCTG < 41bp 0.576192801941711 0.858510032180195 NA NA prediction 0.564634460476968 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422716 chr16:31422715 synonymous SNV . 0 20 hm7G_associated_SNPs_16160 0 0 0 0 2 ITGAD chr16:31422629 3'AG 31422629 Downstream 87bp 15428 chr7 48146550 48146550 1 + G T LUAD 48146551 + 48146531 48146571 41 GTTTGAGCAGATTGTCCTGGGGAAGCGGGTCATCCGGAAAA GTTTGAGCAGATTGTCCTGTGGAAGCGGGTCATCCGGAAAA < 41bp 0.579211373160577 0.861528036381665 NA NA prediction 0.564633326442176 Functional Gain - UPP1 ENSG00000183696 CDS Human protein_coding chr7:48146551 chr7:48146550 nonsynonymous SNV 0.929 4 20 hm7G_associated_SNPs_16161 0 0 1 0 1 UPP1 chr7:48146470 3'AG 48146470 Downstream 81bp 15429 chr1 104117929 104117929 1 + G T LUSC 104117930 + 104117910 104117950 41 ACAATCAACGAGGACATGGGGCTGGAGGAGCCTCTATTCTT ACAATCAACGAGGACATGGTGCTGGAGGAGCCTCTATTCTT < 41bp 0.538355478758354 0.820660533610401 NA NA prediction 0.564610109704094 Functional Gain - AMY2B ENSG00000240038 CDS Human protein_coding chr1:104117930 chr1:104117929 synonymous SNV . 0 20 hm7G_associated_SNPs_16163 0 0 0 0 2 AMY2B chr1:104117845 3'AG 104117845 Downstream 85bp 15430 chr1 104117929 104117929 1 + G T LUSC 104117930 + 104117910 104117950 41 ACAATCAACGAGGACATGGGGCTGGAGGAGCCTCTATTCTT ACAATCAACGAGGACATGGTGCTGGAGGAGCCTCTATTCTT < 41bp 0.538355478758354 0.820660533610401 NA NA prediction 0.564610109704094 Functional Gain - AMY2B ENSG00000240038 CDS Human protein_coding chr1:104117930 chr1:104117929 synonymous SNV . 0 20 hm7G_associated_SNPs_16163 0 0 0 0 2 AMY2B chr1:104117967 5'GT 104117967 Upstream 39bp 15431 chr19 45975914 45975914 1 + G T STAD 45975915 + 45975895 45975935 41 GCTGGTGGCCCACAAACCGGGCTGCAAGATCCCCTACGAAG GCTGGTGGCCCACAAACCGTGCTGCAAGATCCCCTACGAAG < 41bp 0.554006989431227 0.836307984797692 NA NA prediction 0.56460199073293 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45975915 chr19:45975914 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16164 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 51bp 15432 chr17 33501326 33501326 1 + G T LUAD 33501327 + 33501307 33501347 41 CGGGTGTCATCTCTGCCCTGGCTTGCATGGTGAAAGCAGAT CGGGTGTCATCTCTGCCCTTGCTTGCATGGTGAAAGCAGAT < 41bp 0.57397887096122 0.856277789657198 NA NA prediction 0.564597837391955 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33501327 chr17:33501326 synonymous SNV . 0 20 hm7G_associated_SNPs_16165 0 0 0 0 2 UNC45B chr17:33501261 3'AG 33501261 Downstream 66bp 15433 chr17 33501326 33501326 1 + G T LUAD 33501327 + 33501307 33501347 41 CGGGTGTCATCTCTGCCCTGGCTTGCATGGTGAAAGCAGAT CGGGTGTCATCTCTGCCCTTGCTTGCATGGTGAAAGCAGAT < 41bp 0.57397887096122 0.856277789657198 NA NA prediction 0.564597837391955 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33501327 chr17:33501326 synonymous SNV . 0 20 hm7G_associated_SNPs_16165 0 0 0 0 2 UNC45B chr17:33501388 5'GT 33501388 Upstream 63bp 15434 chr19 58002838 58002838 1 + G T LUAD 58002839 + 58002819 58002859 41 TACTCTGTCCATCTTAGCAGGGCTATGTGACCTTTGAGGAT TACTCTGTCCATCTTAGCATGGCTATGTGACCTTTGAGGAT < 41bp 0.545540708628074 0.827830476321066 NA NA prediction 0.564579535385984 Functional Gain - ZNF419;ZNF419 ENSG00000105136;ENSG00000105136;ENSG00000268107 exonic;splicing Human protein_coding chr19:58002839 chr19:58002838 nonsynonymous SNV 0.154 3 20 hm7G_associated_SNPs_16166 0 0 1 0 1 ZNF419 chr19:58002836 3'AG 58002836 Downstream 3bp 15435 chr20 36952395 36952395 1 + G T LUAD 36952396 + 36952376 36952416 41 CTACTTCTTCAACACAGCCGGGCTTGTATACCAAGAGGCTG CTACTTCTTCAACACAGCCTGGCTTGTATACCAAGAGGCTG < 41bp 0.459864466625342 0.782282854241792 NA NA prediction 0.564565708483585 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36952396 chr20:36952395 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_16169 0 0 0 0 1 BPI chr20:36952448 5'GT 36952448 Upstream 54bp 15436 chr3 197748368 197748368 1 + G T UCEC 197748369 + 197748349 197748389 41 AGATTTGCCTTATTATGGTGGCTCCGTGGAAATTGCTGACT AGATTTGCCTTATTATGGTTGCTCCGTGGAAATTGCTGACT < 41bp 0.561936688576945 0.844217508990725 NA NA prediction 0.564561640827559 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197748369 chr3:197748368 nonsynonymous SNV 0.565 4 20 hm7G_associated_SNPs_16170 0 0 0 0 1 LMLN chr3:197748317 3'AG 197748317 Downstream 52bp 15437 chr18 61223515 61223515 1 + G T LUSC 61223516 + 61223496 61223536 41 TCTCAGCTGCCCTTGGTATGGTACGCTTGGGTGCTAGAAGT TCTCAGCTGCCCTTGGTATTGTACGCTTGGGTGCTAGAAGT < 41bp 0.534704659007486 0.816972471278926 NA NA prediction 0.56453562454288 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61223516 chr18:61223515 nonsynonymous SNV 0.807 5 20 hm7G_associated_SNPs_16174 0 0 0 0 1 SERPINB12 chr18:61223560 5'GT 61223560 Upstream 46bp 15438 chr8 67062607 67062607 1 + G T LUSC 67062608 + 67062588 67062628 41 CATCAAAGGCATTTCAGATGGAGAAAATAGAACATGGCTAT CATCAAAGGCATTTCAGATTGAGAAAATAGAACATGGCTAT < 41bp 0.54116926270701 0.823431529352601 NA NA prediction 0.564524533291182 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67062608 chr8:67062607 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16175 0 0 0 0 2 TRIM55 chr8:67062577 3'AG 67062577 Downstream 31bp 15439 chr8 67062607 67062607 1 + G T LUSC 67062608 + 67062588 67062628 41 CATCAAAGGCATTTCAGATGGAGAAAATAGAACATGGCTAT CATCAAAGGCATTTCAGATTGAGAAAATAGAACATGGCTAT < 41bp 0.54116926270701 0.823431529352601 NA NA prediction 0.564524533291182 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67062608 chr8:67062607 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16175 0 0 0 0 2 TRIM55 chr8:67062701 5'GT 67062701 Upstream 95bp 15440 chr11 65734948 65734948 1 + G T LUAD 65734949 + 65734929 65734969 41 CTCCTTCCCTCAGACTGCGGGGACGGGGTCGCCGCCGAGTG CTCCTTCCCTCAGACTGCGTGGACGGGGTCGCCGCCGAGTG < 41bp 0.569908537726929 0.852169452950518 NA NA prediction 0.564521830447179 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65734949 chr11:65734948 synonymous SNV . 0 20 hm7G_associated_SNPs_16176 0 0 1 0 1 SART1 chr11:65734942 3'AG 65734942 Downstream 7bp 15441 chr17 76202113 76202113 1 + G T THYM 76202114 + 76202094 76202134 41 TTGAGAATCTGACCCAGAAGGACAACGTGCTCACCCAGGTG TTGAGAATCTGACCCAGAATGACAACGTGCTCACCCAGGTG < 41bp 0.460144400583233 0.782257828318482 NA NA prediction 0.564515656636965 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76202114 chr17:76202113 nonsynonymous SNV 0.345 0 20 hm7G_associated_SNPs_16177 0 0 1 0 2 AFMID chr17:76202027 3'AG 76202027 Downstream 87bp 15442 chr17 76202113 76202113 1 + G T THYM 76202114 + 76202094 76202134 41 TTGAGAATCTGACCCAGAAGGACAACGTGCTCACCCAGGTG TTGAGAATCTGACCCAGAATGACAACGTGCTCACCCAGGTG < 41bp 0.460144400583233 0.782257828318482 NA NA prediction 0.564515656636965 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76202114 chr17:76202113 nonsynonymous SNV 0.345 0 20 hm7G_associated_SNPs_16177 0 0 1 0 2 AFMID chr17:76202131 5'GT 76202131 Upstream 19bp 15443 chr1 22895844 22895844 1 + G T LUAD 22895845 + 22895825 22895865 41 GCTCACGTATCCGGCTCATGGGGTGAGTGATGGGCACTGGG GCTCACGTATCCGGCTCATTGGGTGAGTGATGGGCACTGGG < 41bp 0.450189514778579 0.782249796594094 NA NA prediction 0.564499593188188 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22895845 chr1:22895844 nonsynonymous SNV 0.794 4 20 hm7G_associated_SNPs_16180 0 0 0 0 2 EPHA8 chr1:22895782 3'AG 22895782 Downstream 63bp 15444 chr1 22895844 22895844 1 + G T LUAD 22895845 + 22895825 22895865 41 GCTCACGTATCCGGCTCATGGGGTGAGTGATGGGCACTGGG GCTCACGTATCCGGCTCATTGGGTGAGTGATGGGCACTGGG < 41bp 0.450189514778579 0.782249796594094 NA NA prediction 0.564499593188188 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22895845 chr1:22895844 nonsynonymous SNV 0.794 4 20 hm7G_associated_SNPs_16180 0 0 0 0 2 EPHA8 chr1:22895846 5'GT 22895846 Upstream 3bp 15445 chr8 74917093 74917093 1 + G T COAD 74917094 + 74917074 74917114 41 AGAATTGAAAAGATCCAAAGGATTATTGCACATTTTCTACA AGAATTGAAAAGATCCAAATGATTATTGCACATTTTCTACA < 41bp 0.516158211046457 0.798403241192866 NA NA prediction 0.564490060292818 Functional Gain - LY96 ENSG00000154589 CDS Human protein_coding chr8:74917094 chr8:74917093 stopgain 0.112 1 20 hm7G_associated_SNPs_16181 0 0 0 0 2 LY96 chr8:74917031 3'AG 74917031 Downstream 63bp 15446 chr8 74917093 74917093 1 + G T COAD 74917094 + 74917074 74917114 41 AGAATTGAAAAGATCCAAAGGATTATTGCACATTTTCTACA AGAATTGAAAAGATCCAAATGATTATTGCACATTTTCTACA < 41bp 0.516158211046457 0.798403241192866 NA NA prediction 0.564490060292818 Functional Gain - LY96 ENSG00000154589 CDS Human protein_coding chr8:74917094 chr8:74917093 stopgain 0.112 1 20 hm7G_associated_SNPs_16181 0 0 0 0 2 LY96 chr8:74917120 5'GT 74917120 Upstream 28bp 15447 chr2 102955310 102955310 1 + G T COAD 102955311 + 102955291 102955331 41 TTGCAGGTAAACAATCATGGGGCCTGGAAAATGAGGCTTTA TTGCAGGTAAACAATCATGTGGCCTGGAAAATGAGGCTTTA < 41bp 0.475167677252218 0.782240481600764 NA NA prediction 0.564480963201528 Functional Gain - IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102955311 chr2:102955310 nonsynonymous SNV 0.113 1 20 hm7G_associated_SNPs_16182 0 0 0 0 1 IL1RL1 chr2:102955297 3'AG 102955297 Downstream 14bp 15448 chr14 65031509 65031509 1 + G T rs74056311 65031510 + 65031490 65031530 41 CAAGGAAAAAGGAAAGAAAGGCAAAGCAGTTCACTTTGCAG CAAGGAAAAAGGAAAGAAATGCAAAGCAGTTCACTTTGCAG < 41bp 0.532463841505851 0.814672172473048 NA NA prediction 0.564416661934393 Functional Gain - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65031510 chr14:65031509 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16187 0 0 0 0 2 PPP1R36 chr14:65031469 3'AG 65031469 Downstream 41bp 15449 chr14 65031509 65031509 1 + G T rs74056311 65031510 + 65031490 65031530 41 CAAGGAAAAAGGAAAGAAAGGCAAAGCAGTTCACTTTGCAG CAAGGAAAAAGGAAAGAAATGCAAAGCAGTTCACTTTGCAG < 41bp 0.532463841505851 0.814672172473048 NA NA prediction 0.564416661934393 Functional Gain - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65031510 chr14:65031509 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16187 0 0 0 0 2 PPP1R36 chr14:65031555 5'GT 65031555 Upstream 47bp 15450 chr5 76717652 76717652 1 + G T UCEC 76717653 + 76717633 76717673 41 ATCTGTTTTCCAGATTGAAGGCAGCGACTGTGAATGCAACC ATCTGTTTTCCAGATTGAATGCAGCGACTGTGAATGCAACC < 41bp 0.475488786665079 0.782202273730439 NA NA prediction 0.564404547460879 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76717653 chr5:76717652 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_16188 0 0 0 0 1 PDE8B chr5:76717646 3'AG 76717646 Downstream 7bp 15451 chr5 41911179 41911179 1 + G T HNSC 41911180 + 41911160 41911200 41 TGCTTGGGGATGAGCTACTGGAATGTCTCTCTTGGAGACGA TGCTTGGGGATGAGCTACTTGAATGTCTCTCTTGGAGACGA < 41bp 0.476750169508211 0.78219770539217 NA NA prediction 0.564395410784339 Functional Gain - C5orf51 ENSG00000205765 CDS Human protein_coding chr5:41911180 chr5:41911179 synonymous SNV . 0 20 hm7G_associated_SNPs_16189 0 0 1 0 1 C5orf51 chr5:41911150 3'AG 41911150 Downstream 30bp 15452 chr5 148745675 148745675 1 + G T ACC 148745676 + 148745656 148745696 41 GTCGTTTCTGCTGTCCTGCGGGCCAGCTATGGCCAGTCAGC GTCGTTTCTGCTGTCCTGCTGGCCAGCTATGGCCAGTCAGC < 41bp 0.572279259909411 0.854472350984037 NA NA prediction 0.564386182149252 Functional Gain - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148745676 chr5:148745675 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16190 0 0 0 0 1 PCYOX1L chr5:148745716 5'GT 148745716 Upstream 42bp 15453 chr15 68124994 68124994 1 + G T LUAD 68124995 + 68124975 68125015 41 TGGCTTATCGAGAAGAAATGGTGCAACAGCTGCAAATTGTC TGGCTTATCGAGAAGAAATTGTGCAACAGCTGCAAATTGTC < 41bp 0.472629501581425 0.782186123960714 NA NA prediction 0.564372247921428 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68124995 chr15:68124994 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16191 0 0 0 0 2 SKOR1 chr15:68124945 3'AG 68124945 Downstream 50bp 15454 chr15 68124994 68124994 1 + G T LUAD 68124995 + 68124975 68125015 41 TGGCTTATCGAGAAGAAATGGTGCAACAGCTGCAAATTGTC TGGCTTATCGAGAAGAAATTGTGCAACAGCTGCAAATTGTC < 41bp 0.472629501581425 0.782186123960714 NA NA prediction 0.564372247921428 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68124995 chr15:68124994 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16191 0 0 0 0 2 SKOR1 chr15:68125019 5'GT 68125019 Upstream 26bp 15455 chr1 108994893 108994893 1 + G T UCEC 108994894 + 108994874 108994914 41 AAGCTGGCAGAGAAGCTCAGGCAAGCTGAGGAGCTCAGGTG AAGCTGGCAGAGAAGCTCATGCAAGCTGAGGAGCTCAGGTG < 41bp 0.464068257229449 0.782177767429642 NA NA prediction 0.564355534859284 Functional Gain - NBPF6 ENSG00000186086 CDS Human protein_coding chr1:108994894 chr1:108994893 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_16196 0 0 0 0 1 NBPF6 chr1:108994911 5'GT 108994911 Upstream 19bp 15456 chr20 47630156 47630156 1 + G T LUAD 47630157 + 47630137 47630177 41 GCTCCTGGTGACAGAGTCTGGGTCCGAGGCTGGTTCCCCAT GCTCCTGGTGACAGAGTCTTGGTCCGAGGCTGGTTCCCCAT < 41bp 0.568340283703095 0.850495311694924 NA NA prediction 0.56431005598366 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47630157 chr20:47630156 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16198 0 0 1 0 2 ARFGEF2 chr20:47630101 3'AG 47630101 Downstream 56bp 15457 chr20 47630156 47630156 1 + G T LUAD 47630157 + 47630137 47630177 41 GCTCCTGGTGACAGAGTCTGGGTCCGAGGCTGGTTCCCCAT GCTCCTGGTGACAGAGTCTTGGTCCGAGGCTGGTTCCCCAT < 41bp 0.568340283703095 0.850495311694924 NA NA prediction 0.56431005598366 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47630157 chr20:47630156 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16198 0 0 1 0 2 ARFGEF2 chr20:47630231 5'GT 47630231 Upstream 76bp 15458 chr2 159499197 159499197 1 + G T STAD 159499198 + 159499178 159499218 41 TCTATTGATGCAGAAGTAAGGGAGCTTGTTACAGGTAGGTA TCTATTGATGCAGAAGTAATGGAGCTTGTTACAGGTAGGTA < 41bp 0.552934678411037 0.835083763493172 NA NA prediction 0.564298170164269 Functional Gain - PKP4 ENSG00000144283 CDS Human protein_coding chr2:159499198 chr2:159499197 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16199 0 0 1 0 1 PKP4 chr2:159499211 5'GT 159499211 Upstream 15bp 15459 chr17 36478394 36478394 1 + G T LUAD 36478395 + 36478375 36478415 41 GCGTCCTACTCTTGCAGACGGTGATGATCCCTGGCCCTCAG GCGTCCTACTCTTGCAGACTGTGATGATCCCTGGCCCTCAG < 41bp 0.521750138619143 0.803897601546817 NA NA prediction 0.564294925855347 Functional Gain - MRPL45 ENSG00000174100 CDS Human other chr17:36478395 chr17:36478394 synonymous SNV . 0 20 hm7G_associated_SNPs_16200 0 0 1 0 1 MRPL45 chr17:36478392 3'AG 36478392 Downstream 3bp 15460 chr19 17327016 17327016 1 + G T LUSC 17327017 + 17326997 17327037 41 CACTGGCCAACCAGTTCCTGGCCCCTGGCCGTGTGCCAACC CACTGGCCAACCAGTTCCTTGCCCCTGGCCGTGTGCCAACC < 41bp 0.587064703867909 0.869207379555032 NA NA prediction 0.564285351374247 Functional Gain - USE1 ENSG00000053501 CDS Human protein_coding chr19:17327017 chr19:17327016 synonymous SNV . 0 20 hm7G_associated_SNPs_16201 0 0 1 0 1 USE1 chr19:17326978 3'AG 17326978 Downstream 39bp 15461 chr22 50649279 50649279 1 + G T COAD 50649280 + 50649260 50649300 41 GGAAGCTGGGCCTCGTGCAGGTGGAGCTGGAGGAAGACGGG GGAAGCTGGGCCTCGTGCATGTGGAGCTGGAGGAAGACGGG < 41bp 0.461765865139018 0.782122458345948 NA NA prediction 0.564244916691895 Functional Gain - SELENOO ENSG00000073169 CDS Human protein_coding chr22:50649280 chr22:50649279 unknown 0.000 0 20 hm7G_associated_SNPs_16203 0 0 0 0 1 SELENOO chr22:50649340 5'GT 50649340 Upstream 62bp 15462 chr17 5073849 5073849 1 + G T STAD 5073850 + 5073830 5073870 41 AGCCCTAATAGCAGCCCACGGACTTTGGGGAGGAGCAAAGG AGCCCTAATAGCAGCCCACTGACTTTGGGGAGGAGCAAAGG < 41bp 0.455542618283644 0.782116937540137 NA NA prediction 0.564233875080274 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5073850 chr17:5073849 nonsynonymous SNV 0.977 1 20 hm7G_associated_SNPs_16204 0 0 0 0 1 USP6 chr17:5073774 3'AG 5073774 Downstream 76bp 15463 chr1 179631268 179631268 1 + G T LUAD 179631269 + 179631249 179631289 41 CCACTGGAATGCCATGCCTGGAGTCAGTGACCATAGGTGAT CCACTGGAATGCCATGCCTTGAGTCAGTGACCATAGGTGAT < 41bp 0.559835279472695 0.841944642996351 NA NA prediction 0.564218727047311 Functional Gain - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179631269 chr1:179631268 synonymous SNV . 0 20 hm7G_associated_SNPs_16205 0 0 0 0 1 TDRD5 chr1:179631239 3'AG 179631239 Downstream 30bp 15464 chr8 69136826 69136826 1 + G T LUAD 69136827 + 69136807 69136847 41 AGAACACAGCGAAGAATTTGGGAGTCAGAGACCGGACTCCA AGAACACAGCGAAGAATTTTGGAGTCAGAGACCGGACTCCA < 41bp 0.553419501415354 0.835521070748016 NA NA prediction 0.564203138665324 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69136827 chr8:69136826 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_16206 0 0 0 0 2 PREX2 chr8:69136794 3'AG 69136794 Downstream 33bp 15465 chr8 69136826 69136826 1 + G T LUAD 69136827 + 69136807 69136847 41 AGAACACAGCGAAGAATTTGGGAGTCAGAGACCGGACTCCA AGAACACAGCGAAGAATTTTGGAGTCAGAGACCGGACTCCA < 41bp 0.553419501415354 0.835521070748016 NA NA prediction 0.564203138665324 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69136827 chr8:69136826 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_16206 0 0 0 0 2 PREX2 chr8:69136861 5'GT 69136861 Upstream 36bp 15466 chr9 140058232 140058232 1 + G T LUSC 140058233 + 140058213 140058253 41 GTCTTCATGCTGGTAGCTGGGGGCATCGTGGCCGGGATCTT GTCTTCATGCTGGTAGCTGTGGGCATCGTGGCCGGGATCTT < 41bp 0.543363640466301 0.825443753965621 NA NA prediction 0.564160226998639 Functional Gain - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140058233 chr9:140058232 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_16209 0 0 0 0 1 GRIN1 chr9:140058211 3'AG 140058211 Downstream 22bp 15467 chr1 44437957 44437957 1 + G T BRCA 44437958 + 44437938 44437978 41 CAAATGATCATGGAAGCTTGGCTCTGACCCCACGGCCCCAG CAAATGATCATGGAAGCTTTGCTCTGACCCCACGGCCCCAG < 41bp 0.572464645948495 0.854540066156908 NA NA prediction 0.564150840416826 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437958 chr1:44437957 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_16210 0 0 1 0 1 DPH2 chr1:44438006 5'GT 44438006 Upstream 50bp 15468 chr9 131762021 131762021 1 + G T rs147959429 131762022 + 131762002 131762042 41 CATTAGGCAGTGCCACAGAGGACAAGGACAGCATGGAGACT CATTAGGCAGTGCCACAGATGACAAGGACAGCATGGAGACT < 41bp 0.564216110510075 0.846279464454403 NA NA prediction 0.564126707888656 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131762022 chr9:131762021 nonsynonymous SNV 0.954 1 20 hm7G_associated_SNPs_16214 0 0 1 0 1 NUP188 chr9:131762084 5'GT 131762084 Upstream 64bp 15469 chr17 74901391 74901391 1 + G T LUAD 74901392 + 74901372 74901412 41 GCCTGGCACAGAAGCTGGGGGCCACCCAGAGGGACCAGAAG GCCTGGCACAGAAGCTGGGTGCCACCCAGAGGGACCAGAAG < 41bp 0.579746579396692 0.861799983642763 NA NA prediction 0.564106808492142 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74901392 chr17:74901391 synonymous SNV . 0 20 hm7G_associated_SNPs_16216 0 0 0 0 1 MGAT5B chr17:74901415 5'GT 74901415 Upstream 25bp 15470 chr6 37349011 37349011 1 + G T THCA 37349012 + 37348992 37349032 41 ATAGAATGCCCCATTTGTCGGAAGGACATTAAGTCCAAAAC ATAGAATGCCCCATTTGTCTGAAGGACATTAAGTCCAAAAC < 41bp 0.543280473073868 0.825333399779443 NA NA prediction 0.564105853411151 Functional Gain - RNF8 ENSG00000112130 CDS Human protein_coding chr6:37349012 chr6:37349011 nonsynonymous SNV 0.966 4 20 hm7G_associated_SNPs_16217 0 0 1 0 1 RNF8 chr6:37348926 3'AG 37348926 Downstream 86bp 15471 chr20 30419617 30419617 1 + G T LUSC 30419618 + 30419598 30419638 41 TTGAGGCCGTATCAGACGAGGCCAAAGACTTTGTCTCCAAC TTGAGGCCGTATCAGACGATGCCAAAGACTTTGTCTCCAAC < 41bp 0.459643269772528 0.78205016092309 NA NA prediction 0.56410032184618 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30419618 chr20:30419617 nonsynonymous SNV 0.894 0 20 hm7G_associated_SNPs_16218 0 0 0 0 1 MYLK2 chr20:30419658 5'GT 30419658 Upstream 42bp 15472 chr4 146479012 146479012 1 + G T LUAD 146479013 + 146478993 146479033 41 GATTGAGATACATCTGCACGGCCCCCTCCAGTGGCTGGATA GATTGAGATACATCTGCACTGCCCCCTCCAGTGGCTGGATA < 41bp 0.543027881645493 0.825075047487765 NA NA prediction 0.564094331684544 Functional Gain - SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146479013 chr4:146479012 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_16219 0 0 1 0 1 SMAD1 chr4:146478943 3'AG 146478943 Downstream 70bp 15473 chr11 60689262 60689262 1 + G T UCEC 60689263 + 60689243 60689283 41 CAGGTGATTACCTCGCCCAGGGCCTGAAGCTCAGCCCTGGC CAGGTGATTACCTCGCCCATGGCCTGAAGCTCAGCCCTGGC < 41bp 0.563345402121478 0.845361583189769 NA NA prediction 0.564032362136583 Functional Gain - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60689263 chr11:60689262 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_16221 0 0 1 0 1 TMEM109 chr11:60689246 3'AG 60689246 Downstream 17bp 15474 chr12 54422634 54422634 1 + G T HNSC 54422635 + 54422615 54422655 41 TTTAGTTCTGAGCAGGGCAGGACTGCGCCCCAGGACCAGAA TTTAGTTCTGAGCAGGGCATGACTGCGCCCCAGGACCAGAA < 41bp 0.532929864686702 0.814932401822068 NA NA prediction 0.564005074270733 Functional Gain - HOXC6 ENSG00000197757 CDS Human protein_coding chr12:54422635 chr12:54422634 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16222 0 0 1 0 1 HOXC6 chr12:54422705 5'GT 54422705 Upstream 72bp 15475 chr11 68705714 68705714 1 + G T LUSC 68705715 + 68705695 68705735 41 TGGTTTCTGCCGCCGTTAAGGCTGATAACACCTGCGGCTTT TGGTTTCTGCCGCCGTTAATGCTGATAACACCTGCGGCTTT < 41bp 0.453803325074132 0.781941942087962 NA NA prediction 0.563883884175925 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68705715 chr11:68705714 nonsynonymous SNV 0.689 2 20 hm7G_associated_SNPs_16225 0 0 0 0 1 IGHMBP2 chr11:68705650 3'AG 68705650 Downstream 65bp 15476 chr4 71465293 71465293 1 + G T COAD 71465294 + 71465274 71465314 41 AAATCATTTAATTCTTTGTGGATGCACGGTCTCCTCCCACC AAATCATTTAATTCTTTGTTGATGCACGGTCTCCTCCCACC < 41bp 0.550406032716712 0.832337489967264 NA NA prediction 0.563862914501104 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71465294 chr4:71465293 nonsynonymous SNV 0.855 4 20 hm7G_associated_SNPs_16227 0 0 0 0 2 AMBN chr4:71465253 3'AG 71465253 Downstream 41bp 15477 chr4 71465293 71465293 1 + G T COAD 71465294 + 71465274 71465314 41 AAATCATTTAATTCTTTGTGGATGCACGGTCTCCTCCCACC AAATCATTTAATTCTTTGTTGATGCACGGTCTCCTCCCACC < 41bp 0.550406032716712 0.832337489967264 NA NA prediction 0.563862914501104 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71465294 chr4:71465293 nonsynonymous SNV 0.855 4 20 hm7G_associated_SNPs_16227 0 0 0 0 2 AMBN chr4:71465363 5'GT 71465363 Upstream 71bp 15478 chr1 158046019 158046019 1 + G T UCEC 158046020 + 158046000 158046040 41 TGTGCAATGGACCAAGGACGGGCTGGCCCTGGGCATGGGCC TGTGCAATGGACCAAGGACTGGCTGGCCCTGGGCATGGGCC < 41bp 0.576588458391671 0.858518803850888 NA NA prediction 0.563860690918435 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158046020 chr1:158046019 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_16228 0 0 0 0 1 KIRREL chr1:158046052 5'GT 158046052 Upstream 34bp 15479 chr5 94990045 94990045 1 + G T COAD 94990046 + 94990026 94990066 41 TTCCTTTTCAGACTCAGGAGGACCTTTACATTTGGGAGATA TTCCTTTTCAGACTCAGGATGACCTTTACATTTGGGAGATA < 41bp 0.4980038573178 0.781924339247052 NA NA prediction 0.563848678494104 Functional Gain - RFESD ENSG00000175449 CDS Human protein_coding chr5:94990046 chr5:94990045 stopgain 1.000 1 20 hm7G_associated_SNPs_16230 0 0 1 0 2 RFESD chr5:94990037 3'AG 94990037 Downstream 9bp 15480 chr5 94990045 94990045 1 + G T COAD 94990046 + 94990026 94990066 41 TTCCTTTTCAGACTCAGGAGGACCTTTACATTTGGGAGATA TTCCTTTTCAGACTCAGGATGACCTTTACATTTGGGAGATA < 41bp 0.4980038573178 0.781924339247052 NA NA prediction 0.563848678494104 Functional Gain - RFESD ENSG00000175449 CDS Human protein_coding chr5:94990046 chr5:94990045 stopgain 1.000 1 20 hm7G_associated_SNPs_16230 0 0 1 0 2 RFESD chr5:94990071 5'GT 94990071 Upstream 27bp 15481 chrX 146993715 146993715 1 + G T rs111485627 146993716 + 146993696 146993736 41 AGATGGAGGAGCTGGTGGTGGAAGTGCGGGGCTCCAATGGC AGATGGAGGAGCTGGTGGTTGAAGTGCGGGGCTCCAATGGC < 41bp 0.498637345392091 0.781923342648773 NA NA prediction 0.563846685297546 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:146993716 chrX:146993715 synonymous SNV . 0 20 hm7G_associated_SNPs_16231 0 0 1 0 1 FMR1 chrX:146993748 5'GT 146993748 Upstream 34bp 15482 chr7 105621488 105621488 1 + G T UCEC 105621489 + 105621469 105621509 41 ATTTGCAGATTTATGTGAAGGATGAGGTTGGTGTCACAGAC ATTTGCAGATTTATGTGAATGATGAGGTTGGTGTCACAGAC < 41bp 0.471418954735647 0.781920035448073 NA NA prediction 0.563840070896147 Functional Gain - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105621489 chr7:105621488 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_16232 0 0 0 1 2 CDHR3 chr7:105621414 3'AG 105621414 Downstream 75bp 15483 chr7 105621488 105621488 1 + G T UCEC 105621489 + 105621469 105621509 41 ATTTGCAGATTTATGTGAAGGATGAGGTTGGTGTCACAGAC ATTTGCAGATTTATGTGAATGATGAGGTTGGTGTCACAGAC < 41bp 0.471418954735647 0.781920035448073 NA NA prediction 0.563840070896147 Functional Gain - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105621489 chr7:105621488 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_16232 0 0 0 1 2 CDHR3 chr7:105621579 5'GT 105621579 Upstream 92bp 15484 chr16 67293479 67293479 1 + G T UCEC 67293480 + 67293460 67293500 41 GTCTTGACACCTGCAGGGAGGCCACGTCTTGTCTTCCACAG GTCTTGACACCTGCAGGGATGCCACGTCTTGTCTTCCACAG < 41bp 0.44736882638582 0.781909390877468 NA NA prediction 0.563818781754937 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67293480 chr16:67293479 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_16234 0 0 1 0 2 SLC9A5 chr16:67293476 3'AG 67293476 Downstream 4bp 15485 chr16 67293479 67293479 1 + G T UCEC 67293480 + 67293460 67293500 41 GTCTTGACACCTGCAGGGAGGCCACGTCTTGTCTTCCACAG GTCTTGACACCTGCAGGGATGCCACGTCTTGTCTTCCACAG < 41bp 0.44736882638582 0.781909390877468 NA NA prediction 0.563818781754937 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67293480 chr16:67293479 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_16234 0 0 1 0 2 SLC9A5 chr16:67293564 5'GT 67293564 Upstream 86bp 15486 chr10 71010051 71010051 1 + G T SKCM 71010052 + 71010032 71010072 41 TTTCTCCATCACAGAGAAAGGAAAGTTTCTCGCCCTGGATC TTTCTCCATCACAGAGAAATGAAAGTTTCTCGCCCTGGATC < 41bp 0.465232166520051 0.781906270120032 NA NA prediction 0.563812540240065 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71010052 chr10:71010051 stopgain 0.963 1 20 hm7G_associated_SNPs_16235 0 0 0 0 1 HKDC1 chr10:71010046 3'AG 71010046 Downstream 6bp 15487 chr13 37012875 37012875 1 + G T LUAD 37012876 + 37012856 37012896 41 GACTGGCTGGTGGAGGTTGGGGAAGAATATAAACTTCGAGC GACTGGCTGGTGGAGGTTGTGGAAGAATATAAACTTCGAGC < 41bp 0.469252588110299 0.781891735109533 NA NA prediction 0.563783470219065 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37012876 chr13:37012875 nonsynonymous SNV 0.073 1 20 hm7G_associated_SNPs_16236 0 0 0 0 1 CCNA1 chr13:37012781 3'AG 37012781 Downstream 95bp 15488 chr3 121994885 121994885 1 + G T COAD 121994886 + 121994866 121994906 41 CTGTGGAGTGGGTTCTCCAGGGAGGTAGGTGCTGTCCATCA CTGTGGAGTGGGTTCTCCATGGAGGTAGGTGCTGTCCATCA < 41bp 0.464220936067164 0.781886925458854 NA NA prediction 0.563773850917708 Functional Gain - CASR ENSG00000036828 CDS Human protein_coding chr3:121994886 chr3:121994885 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_16238 0 0 0 0 1 CASR chr3:121994889 5'GT 121994889 Upstream 5bp 15489 chr13 45589633 45589633 1 + G T rs140588373 45589634 + 45589614 45589654 41 TCCAGAAATGAAAGACTTTGGTCTTGGGCCAAGGACTTTTA TCCAGAAATGAAAGACTTTTGTCTTGGGCCAAGGACTTTTA < 41bp 0.532911502831448 0.814791399330836 NA NA prediction 0.563759792998778 Functional Gain - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45589634 chr13:45589633 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16240 0 0 1 0 2 GPALPP1 chr13:45589567 3'AG 45589567 Downstream 67bp 15490 chr13 45589633 45589633 1 + G T rs140588373 45589634 + 45589614 45589654 41 TCCAGAAATGAAAGACTTTGGTCTTGGGCCAAGGACTTTTA TCCAGAAATGAAAGACTTTTGTCTTGGGCCAAGGACTTTTA < 41bp 0.532911502831448 0.814791399330836 NA NA prediction 0.563759792998778 Functional Gain - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45589634 chr13:45589633 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16240 0 0 1 0 2 GPALPP1 chr13:45589731 5'GT 45589731 Upstream 99bp 15491 chr20 18523773 18523773 1 + G T STAD 18523774 + 18523754 18523794 41 CGAGCGGAGTCAGAGGAGGGGCCCGATGTGCTCCGGTGGCT CGAGCGGAGTCAGAGGAGGTGCCCGATGTGCTCCGGTGGCT < 41bp 0.449178951558231 0.781872185917223 NA NA prediction 0.563744371834446 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18523774 chr20:18523773 nonsynonymous SNV 0.805 2 20 hm7G_associated_SNPs_16241 0 0 1 0 1 SEC23B chr20:18523816 5'GT 18523816 Upstream 44bp 15492 chr19 4164540 4164540 1 + G T OV 4164541 + 4164521 4164561 41 TCCTACCTCCTGCGACCTGGGGCTGGGCACTGTCAGGAGCT TCCTACCTCCTGCGACCTGTGGCTGGGCACTGTCAGGAGCT < 41bp 0.571589767906562 0.853457015319232 NA NA prediction 0.56373449482534 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4164541 chr19:4164540 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_16242 0 0 1 0 3 CREB3L3 chr19:4164500 3'AG 4164500 Downstream 41bp 15493 chr19 4164540 4164540 1 + G T OV 4164541 + 4164521 4164561 41 TCCTACCTCCTGCGACCTGGGGCTGGGCACTGTCAGGAGCT TCCTACCTCCTGCGACCTGTGGCTGGGCACTGTCAGGAGCT < 41bp 0.571589767906562 0.853457015319232 NA NA prediction 0.56373449482534 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4164541 chr19:4164540 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_16242 0 0 1 0 3 CREB3L3 chr19:4164506 3'AG 4164506 Downstream 35bp 15494 chr19 4164540 4164540 1 + G T OV 4164541 + 4164521 4164561 41 TCCTACCTCCTGCGACCTGGGGCTGGGCACTGTCAGGAGCT TCCTACCTCCTGCGACCTGTGGCTGGGCACTGTCAGGAGCT < 41bp 0.571589767906562 0.853457015319232 NA NA prediction 0.56373449482534 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4164541 chr19:4164540 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_16242 0 0 1 0 3 CREB3L3 chr19:4164637 5'GT 4164637 Upstream 98bp 15495 chr2 85923124 85923124 1 + G T BRCA 85923125 + 85923105 85923145 41 GAGCTGGGCCGTGACTACAGGACCTGTCTGACGATAGTCCA GAGCTGGGCCGTGACTACATGACCTGTCTGACGATAGTCCA < 41bp 0.467281693436105 0.781854072560823 NA NA prediction 0.563708145121647 Functional Gain - GNLY ENSG00000115523 CDS Human protein_coding chr2:85923125 chr2:85923124 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16245 0 0 0 0 1 GNLY chr2:85923179 5'GT 85923179 Upstream 56bp 15496 chr15 85681082 85681082 1 + G T LIHC 85681083 + 85681063 85681103 41 GACAACAACTTTAAATACTGGAAAGGACTGGACGAAATGAA GACAACAACTTTAAATACTTGAAAGGACTGGACGAAATGAA < 41bp 0.4976849437672 0.781845116369236 NA NA prediction 0.563690232738471 Functional Gain - PDE8A ENSG00000073417 CDS Human protein_coding chr15:85681083 chr15:85681082 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16247 0 0 1 0 1 PDE8A chr15:85681028 3'AG 85681028 Downstream 55bp 15497 chr12 56626635 56626635 1 + G T COAD 56626636 + 56626616 56626656 41 TGTTGCTGGACCACTCATTGGCTGACCACCTGAATGAGGAT TGTTGCTGGACCACTCATTTGCTGACCACCTGAATGAGGAT < 41bp 0.579226278932665 0.861066848525884 NA NA prediction 0.563681139186437 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56626636 chr12:56626635 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_16248 0 0 1 0 1 SLC39A5 chr12:56626656 5'GT 56626656 Upstream 22bp 15498 chr14 24568894 24568894 1 + G T UCEC 24568895 + 24568875 24568915 41 TGGAAAGTGGAGTGTGTGGGGGATGATATTGCTTGGATGAG TGGAAAGTGGAGTGTGTGGTGGATGATATTGCTTGGATGAG < 41bp 0.569017344880751 0.850856885539369 NA NA prediction 0.563679081317236 Functional Gain - PCK2 ENSG00000100889 CDS Human protein_coding chr14:24568895 chr14:24568894 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_16249 0 0 1 0 1 PCK2 chr14:24568929 5'GT 24568929 Upstream 36bp 15499 chr3 122849426 122849426 1 + G T UCEC 122849427 + 122849407 122849447 41 ACTTTGACCAGTTTGTGAAGGAACACTCCTCTGTCCTCGTC ACTTTGACCAGTTTGTGAATGAACACTCCTCTGTCCTCGTC < 41bp 0.458961295060401 0.781832158392481 NA NA prediction 0.563664316784961 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122849427 chr3:122849426 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16250 0 0 1 0 2 PDIA5 chr3:122849327 3'AG 122849327 Downstream 100bp 15500 chr3 122849426 122849426 1 + G T UCEC 122849427 + 122849407 122849447 41 ACTTTGACCAGTTTGTGAAGGAACACTCCTCTGTCCTCGTC ACTTTGACCAGTTTGTGAATGAACACTCCTCTGTCCTCGTC < 41bp 0.458961295060401 0.781832158392481 NA NA prediction 0.563664316784961 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122849427 chr3:122849426 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16250 0 0 1 0 2 PDIA5 chr3:122849463 5'GT 122849463 Upstream 38bp 15501 chr19 46003801 46003801 1 + G T COAD 46003802 + 46003782 46003822 41 ATCCCAGATTTACCTCCTGGGGGAGGGCTGGACTGCAAGTG ATCCCAGATTTACCTCCTGTGGGAGGGCTGGACTGCAAGTG < 41bp 0.568696567593047 0.850516778723521 NA NA prediction 0.563640422260948 Functional Gain - PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003802 chr19:46003801 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16251 0 0 0 0 2 PPM1N chr19:46003714 3'AG 46003714 Downstream 88bp 15502 chr19 46003801 46003801 1 + G T COAD 46003802 + 46003782 46003822 41 ATCCCAGATTTACCTCCTGGGGGAGGGCTGGACTGCAAGTG ATCCCAGATTTACCTCCTGTGGGAGGGCTGGACTGCAAGTG < 41bp 0.568696567593047 0.850516778723521 NA NA prediction 0.563640422260948 Functional Gain - PPM1N ENSG00000213889 CDS Human protein_coding chr19:46003802 chr19:46003801 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16251 0 0 0 0 2 PPM1N chr19:46003819 5'GT 46003819 Upstream 19bp 15503 chr5 139193812 139193812 1 + G T LGG 139193813 + 139193793 139193833 41 CTGAGCTCAGCAGCTCGGAGGGGTTGGAGCCTGGTAGTGCA CTGAGCTCAGCAGCTCGGATGGGTTGGAGCCTGGTAGTGCA < 41bp 0.572826754275529 0.854632505321887 NA NA prediction 0.563611502092717 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139193813 chr5:139193812 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_16253 0 0 0 0 1 PSD2 chr5:139193755 3'AG 139193755 Downstream 58bp 15504 chr3 37512618 37512618 1 + G T UCEC 37512619 + 37512599 37512639 41 GATGCACCGAACTGGACATGGCTCGAGGTGGGTGACCATTA GATGCACCGAACTGGACATTGCTCGAGGTGGGTGACCATTA < 41bp 0.461100993451963 0.78180049055937 NA NA prediction 0.56360098111874 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37512619 chr3:37512618 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16254 0 0 0 0 1 ITGA9 chr3:37512625 5'GT 37512625 Upstream 8bp 15505 chrX 37285103 37285103 1 + G T LUAD 37285104 + 37285084 37285124 41 TCTTTTTAGTTTTCCTCACGGGAGAAAAAGCCAATTCCATA TCTTTTTAGTTTTCCTCACTGGAGAAAAAGCCAATTCCATA < 41bp 0.530728869778523 0.812526873871872 NA NA prediction 0.5635960081867 Functional Gain - PRRG1 ENSG00000130962;ENSG00000250349 CDS Human other chrX:37285104 chrX:37285103 synonymous SNV . 0 20 hm7G_associated_SNPs_16256 0 0 1 0 1 PRRG1 chrX:37285093 3'AG 37285093 Downstream 11bp 15506 chr19 45537553 45537553 1 + G T UCEC 45537554 + 45537534 45537574 41 GGGATGCCCGACGTCCTTGGGGAGCTGAACAGCTCTGGTGT GGGATGCCCGACGTCCTTGTGGAGCTGAACAGCTCTGGTGT < 41bp 0.57110069334262 0.852895911526855 NA NA prediction 0.56359043636847 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45537554 chr19:45537553 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_16257 0 0 0 0 2 RELB chr19:45537502 3'AG 45537502 Downstream 52bp 15507 chr19 45537553 45537553 1 + G T UCEC 45537554 + 45537534 45537574 41 GGGATGCCCGACGTCCTTGGGGAGCTGAACAGCTCTGGTGT GGGATGCCCGACGTCCTTGTGGAGCTGAACAGCTCTGGTGT < 41bp 0.57110069334262 0.852895911526855 NA NA prediction 0.56359043636847 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45537554 chr19:45537553 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_16257 0 0 0 0 2 RELB chr19:45537570 5'GT 45537570 Upstream 18bp 15508 chr22 29517370 29517370 1 + G T LUSC 29517371 + 29517351 29517391 41 GAAACCTTGGCTGCTACAAGGATCATGGAAACCCACCTCCT GAAACCTTGGCTGCTACAATGATCATGGAAACCCACCTCCT < 41bp 0.555565859912632 0.837356822617686 NA NA prediction 0.563581925410107 Functional Gain - KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29517371 chr22:29517370 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16258 0 0 1 0 2 KREMEN1 chr22:29517345 3'AG 29517345 Downstream 26bp 15509 chr22 29517370 29517370 1 + G T LUSC 29517371 + 29517351 29517391 41 GAAACCTTGGCTGCTACAAGGATCATGGAAACCCACCTCCT GAAACCTTGGCTGCTACAATGATCATGGAAACCCACCTCCT < 41bp 0.555565859912632 0.837356822617686 NA NA prediction 0.563581925410107 Functional Gain - KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29517371 chr22:29517370 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16258 0 0 1 0 2 KREMEN1 chr22:29517469 5'GT 29517469 Upstream 100bp 15510 chr22 32754414 32754414 1 + G T UCEC 32754415 + 32754395 32754435 41 ATTCTACAGATGAACCCAAGGATGCGGAAGTTCCAAGGTAA ATTCTACAGATGAACCCAATGATGCGGAAGTTCCAAGGTAA < 41bp 0.537471081362151 0.819248330074921 NA NA prediction 0.563554497425539 Functional Gain - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32754415 chr22:32754414 nonsynonymous SNV 0.010 3 20 hm7G_associated_SNPs_16261 0 0 0 0 1 RFPL3 chr22:32754431 5'GT 32754431 Upstream 18bp 15511 chr14 58814398 58814398 1 + G T LIHC 58814399 + 58814379 58814419 41 TTGAGGAGTACTGCCGTTCGGCAAATATTCAGTTCAGAACT TTGAGGAGTACTGCCGTTCTGCAAATATTCAGTTCAGAACT < 41bp 0.54183087387568 0.823601451211412 NA NA prediction 0.563541154671463 Functional Gain - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58814399 chr14:58814398 synonymous SNV . 0 20 hm7G_associated_SNPs_16262 0 0 1 0 1 ARID4A chr14:58814365 3'AG 58814365 Downstream 34bp 15512 chr1 231339714 231339714 1 + G T UCEC 231339715 + 231339695 231339735 41 CACCCACAGCCCCGTGGACGGCTACATCCTGGAGCTGGACG CACCCACAGCCCCGTGGACTGCTACATCCTGGAGCTGGACG < 41bp 0.570397656734114 0.852153139053826 NA NA prediction 0.563510964639423 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231339715 chr1:231339714 nonsynonymous SNV 0.947 4 20 hm7G_associated_SNPs_16267 0 0 0 0 1 TRIM67 chr1:231339758 5'GT 231339758 Upstream 45bp 15513 chr12 9984949 9984949 1 + G T LUSC 9984950 + 9984930 9984970 41 ACTGGTATAAAATCTTACTGGGAATATCTGGAACCGTGAAT ACTGGTATAAAATCTTACTTGGAATATCTGGAACCGTGAAT < 41bp 0.552229126974765 0.833971776849598 NA NA prediction 0.563485299749667 Functional Gain - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9984950 chr12:9984949 synonymous SNV . 0 20 hm7G_associated_SNPs_16268 0 0 0 0 2 KLRF1 chr12:9984912 3'AG 9984912 Downstream 38bp 15514 chr12 9984949 9984949 1 + G T LUSC 9984950 + 9984930 9984970 41 ACTGGTATAAAATCTTACTGGGAATATCTGGAACCGTGAAT ACTGGTATAAAATCTTACTTGGAATATCTGGAACCGTGAAT < 41bp 0.552229126974765 0.833971776849598 NA NA prediction 0.563485299749667 Functional Gain - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9984950 chr12:9984949 synonymous SNV . 0 20 hm7G_associated_SNPs_16268 0 0 0 0 2 KLRF1 chr12:9985010 5'GT 9985010 Upstream 62bp 15515 chr1 110766518 110766518 1 + G T LUAD 110766519 + 110766499 110766539 41 GTATGATCGAGAGGAAACGGGCAGGTGAGATTAGGGGTTGG GTATGATCGAGAGGAAACGTGCAGGTGAGATTAGGGGTTGG < 41bp 0.555351979131838 0.83707996893741 NA NA prediction 0.563455979611143 Functional Gain - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110766519 chr1:110766518 synonymous SNV . 0 20 hm7G_associated_SNPs_16271 0 0 0 0 1 KCNC4 chr1:110766522 5'GT 110766522 Upstream 5bp 15516 chr20 30729590 30729590 1 + G T LUSC 30729591 + 30729571 30729611 41 TTGCTGACAACCTGCCTGTGGCCACCCGGCTGGAGCTCTAC TTGCTGACAACCTGCCTGTTGCCACCCGGCTGGAGCTCTAC < 41bp 0.585678029871674 0.867399497167561 NA NA prediction 0.563442934591774 Functional Gain - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30729591 chr20:30729590 synonymous SNV . 0 20 hm7G_associated_SNPs_16272 0 0 1 0 1 TM9SF4 chr20:30729569 3'AG 30729569 Downstream 22bp 15517 chr5 102364680 102364680 1 + G T LUAD 102364681 + 102364661 102364701 41 TGACCGGCTTAGCACTGAGGGCAGTGACCAAGAGAAAGAGG TGACCGGCTTAGCACTGAGTGCAGTGACCAAGAGAAAGAGG < 41bp 0.482661942712978 0.781711209720646 NA NA prediction 0.563422419441293 Functional Gain - PAM ENSG00000145730 CDS Human protein_coding chr5:102364681 chr5:102364680 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_16274 0 0 1 0 1 PAM chr5:102364591 3'AG 102364591 Downstream 90bp 15518 chr10 90524173 90524173 1 + G T BLCA 90524174 + 90524154 90524194 41 TTTCCCCCACCAGGTCCCCGGCCAGTTGTGTATATGCAGCA TTTCCCCCACCAGGTCCCCTGCCAGTTGTGTATATGCAGCA < 41bp 0.552482192134799 0.834178300945776 NA NA prediction 0.563392217621955 Functional Gain - LIPN ENSG00000204020 CDS Human protein_coding chr10:90524174 chr10:90524173 nonsynonymous SNV 0.775 4 20 hm7G_associated_SNPs_16276 0 0 0 0 1 LIPN chr10:90524167 3'AG 90524167 Downstream 7bp 15519 chr2 44531320 44531320 1 + G T UCEC 44531321 + 44531301 44531341 41 TATGCAGAGAGTATTGACAGGACCGTGATGTACTATGGATT TATGCAGAGAGTATTGACATGACCGTGATGTACTATGGATT < 41bp 0.532592575415381 0.814263929639677 NA NA prediction 0.563342708448591 Functional Gain - SLC3A1 ENSG00000138079 CDS Human protein_coding chr2:44531321 chr2:44531320 nonsynonymous SNV 0.980 2 20 hm7G_associated_SNPs_16278 0 0 0 0 1 SLC3A1 chr2:44531282 3'AG 44531282 Downstream 39bp 15520 chr2 7160679 7160679 1 + G T LUAD 7160680 + 7160660 7160700 41 TGTCAGCTCCAGGACGTGGGGCTGCAGACCCCCCAGCCAGT TGTCAGCTCCAGGACGTGGTGCTGCAGACCCCCCAGCCAGT < 41bp 0.567493475950683 0.849162311368514 NA NA prediction 0.563337670835663 Functional Gain - RNF144A ENSG00000151692 CDS Human protein_coding chr2:7160680 chr2:7160679 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_16279 0 0 1 0 1 RNF144A chr2:7160604 3'AG 7160604 Downstream 76bp 15521 chr12 58174040 58174040 1 + G T LUAD 58174041 + 58174021 58174061 41 TCCTTCCTCTCTCTCAGGGGGGGATGTTACCATCACTGACC TCCTTCCTCTCTCTCAGGGTGGGATGTTACCATCACTGACC < 41bp 0.534076794448497 0.815732932184181 NA NA prediction 0.563312275471368 Functional Gain - EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58174041 chr12:58174040 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16280 0 0 1 0 1 EEF1AKMT3 chr12:58174038 3'AG 58174038 Downstream 3bp 15522 chr12 52309932 52309932 1 + G T UCEC 52309933 + 52309913 52309953 41 TGGACGAGCAGATCCGCACGGACTGCTTTGAGTCCTACAAG TGGACGAGCAGATCCGCACTGACTGCTTTGAGTCCTACAAG < 41bp 0.446621792666069 0.781580881886732 NA NA prediction 0.563161763773464 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52309933 chr12:52309932 synonymous SNV . 0 20 hm7G_associated_SNPs_16285 0 0 0 0 1 ACVRL1 chr12:52310017 5'GT 52310017 Upstream 86bp 15523 chr10 104233400 104233400 1 + G T LUAD 104233401 + 104233381 104233421 41 GGCGCTGGGGCGTCTACGCGGTGGTGCGGGGGCTCTTCCTG GGCGCTGGGGCGTCTACGCTGTGGTGCGGGGGCTCTTCCTG < 41bp 0.451115811606467 0.781578267675392 NA NA prediction 0.563156535350783 Functional Gain - MFSD13A ENSG00000138111 CDS Human protein_coding chr10:104233401 chr10:104233400 synonymous SNV . 0 20 hm7G_associated_SNPs_16286 0 0 1 0 2 MFSD13A chr10:104233327 3'AG 104233327 Downstream 74bp 15524 chr10 104233400 104233400 1 + G T LUAD 104233401 + 104233381 104233421 41 GGCGCTGGGGCGTCTACGCGGTGGTGCGGGGGCTCTTCCTG GGCGCTGGGGCGTCTACGCTGTGGTGCGGGGGCTCTTCCTG < 41bp 0.451115811606467 0.781578267675392 NA NA prediction 0.563156535350783 Functional Gain - MFSD13A ENSG00000138111 CDS Human protein_coding chr10:104233401 chr10:104233400 synonymous SNV . 0 20 hm7G_associated_SNPs_16286 0 0 1 0 2 MFSD13A chr10:104233498 5'GT 104233498 Upstream 99bp 15525 chr6 122743420 122743420 1 + G T UCEC 122743421 + 122743401 122743441 41 TTATTCCAGAAACTAATGAGGATGTTATATCTGATCCCTCC TTATTCCAGAAACTAATGATGATGTTATATCTGATCCCTCC < 41bp 0.536742093162026 0.818314943409686 NA NA prediction 0.56314570049532 Functional Gain - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122743421 chr6:122743420 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16287 0 0 1 0 1 HSF2 chr6:122743443 5'GT 122743443 Upstream 24bp 15526 chr19 45317500 45317500 1 + G T SARC 45317501 + 45317481 45317521 41 CTGTCCAGCTGCTCTGCCGGGGGGACGGCAGCCCCAGCCCG CTGTCCAGCTGCTCTGCCGTGGGGACGGCAGCCCCAGCCCG < 41bp 0.446016394032567 0.781570564411703 NA NA prediction 0.563141128823407 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45317501 chr19:45317500 synonymous SNV . 0 20 hm7G_associated_SNPs_16290 0 0 1 0 2 BCAM chr19:45317409 3'AG 45317409 Downstream 92bp 15527 chr19 45317500 45317500 1 + G T SARC 45317501 + 45317481 45317521 41 CTGTCCAGCTGCTCTGCCGGGGGGACGGCAGCCCCAGCCCG CTGTCCAGCTGCTCTGCCGTGGGGACGGCAGCCCCAGCCCG < 41bp 0.446016394032567 0.781570564411703 NA NA prediction 0.563141128823407 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45317501 chr19:45317500 synonymous SNV . 0 20 hm7G_associated_SNPs_16290 0 0 1 0 2 BCAM chr19:45317545 5'GT 45317545 Upstream 46bp 15528 chr8 29961948 29961948 1 + G T UCEC 29961949 + 29961929 29961969 41 TTGCCATCTTTCTTACAACGGGCATTGTCGTGTCAGCTTTT TTGCCATCTTTCTTACAACTGGCATTGTCGTGTCAGCTTTT < 41bp 0.551064172949618 0.832633695585082 NA NA prediction 0.563139045270928 Functional Gain - LEPROTL1 ENSG00000104660 CDS Human protein_coding chr8:29961949 chr8:29961948 synonymous SNV . 0 20 hm7G_associated_SNPs_16292 0 0 1 0 1 LEPROTL1 chr8:29962002 5'GT 29962002 Upstream 55bp 15529 chr5 7897305 7897305 1 + G T CESC 7897306 + 7897286 7897326 41 AGACAACATCCAGCTTCATGGCCAGCAGGTGGCGAGAATCC AGACAACATCCAGCTTCATTGCCAGCAGGTGGCGAGAATCC < 41bp 0.559511423310799 0.841071238127054 NA NA prediction 0.563119629632511 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7897306 chr5:7897305 nonsynonymous SNV 0.016 2 20 hm7G_associated_SNPs_16294 0 0 1 0 1 MTRR chr5:7897360 5'GT 7897360 Upstream 56bp 15530 chr5 6754893 6754893 1 + G T UCEC 6754894 + 6754874 6754914 41 GCATGAAACTGTCCATGAAGGGCTCTCACGGCCACACCCAA GCATGAAACTGTCCATGAATGGCTCTCACGGCCACACCCAA < 41bp 0.467540727618255 0.781556953092208 NA NA prediction 0.563113906184416 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6754894 chr5:6754893 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16295 0 0 1 0 2 PAPD7 chr5:6754864 3'AG 6754864 Downstream 30bp 15531 chr5 6754893 6754893 1 + G T UCEC 6754894 + 6754874 6754914 41 GCATGAAACTGTCCATGAAGGGCTCTCACGGCCACACCCAA GCATGAAACTGTCCATGAATGGCTCTCACGGCCACACCCAA < 41bp 0.467540727618255 0.781556953092208 NA NA prediction 0.563113906184416 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6754894 chr5:6754893 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16295 0 0 1 0 2 PAPD7 chr5:6754867 3'AG 6754867 Downstream 27bp 15532 chr12 6575044 6575044 1 + G T rs2072375 6575045 + 6575025 6575065 41 AATACTTCCTCTTTAGCTTGGCAGCACTGCTCTCAAATTGT AATACTTCCTCTTTAGCTTTGCAGCACTGCTCTCAAATTGT < 41bp 0.549035436707709 0.830566832571492 NA NA prediction 0.563062791727566 Functional Gain - VAMP1 ENSG00000139190 CDS Human protein_coding chr12:6575045 chr12:6575044 synonymous SNV . 0 20 hm7G_associated_SNPs_16297 0 0 0 0 1 VAMP1 chr12:6575041 3'AG 6575041 Downstream 4bp 15533 chr12 100806634 100806634 1 + G T LUAD 100806635 + 100806615 100806655 41 CTTTCTGGTACTTGCTGTAGGATTTAGTGGCTTCGCTATTT CTTTCTGGTACTTGCTGTATGATTTAGTGGCTTCGCTATTT < 41bp 0.534000736692831 0.815517067690696 NA NA prediction 0.56303266199573 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100806635 chr12:100806634 stopgain 1.000 1 20 hm7G_associated_SNPs_16299 0 0 0 0 2 SLC17A8 chr12:100806548 3'AG 100806548 Downstream 87bp 15534 chr12 100806634 100806634 1 + G T LUAD 100806635 + 100806615 100806655 41 CTTTCTGGTACTTGCTGTAGGATTTAGTGGCTTCGCTATTT CTTTCTGGTACTTGCTGTATGATTTAGTGGCTTCGCTATTT < 41bp 0.534000736692831 0.815517067690696 NA NA prediction 0.56303266199573 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100806635 chr12:100806634 stopgain 1.000 1 20 hm7G_associated_SNPs_16299 0 0 0 0 2 SLC17A8 chr12:100806658 5'GT 100806658 Upstream 25bp 15535 chr12 109834285 109834285 1 + G T UCEC 109834286 + 109834266 109834306 41 GTGGGGCAGGGAAAACAGAGGCCTCCAAGAAAATTCTCGAG GTGGGGCAGGGAAAACAGATGCCTCCAAGAAAATTCTCGAG < 41bp 0.562243029547678 0.843749701064082 NA NA prediction 0.563013343032808 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109834286 chr12:109834285 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_16301 0 0 0 0 1 MYO1H chr12:109834189 3'AG 109834189 Downstream 97bp 15536 chr15 80469898 80469898 1 + G T LUSC 80469899 + 80469879 80469919 41 GAGAAGGAATGAGCCAGGCGGCTACCATATGCAAGTCCAAT GAGAAGGAATGAGCCAGGCTGCTACCATATGCAAGTCCAAT < 41bp 0.56410889173241 0.845600041302395 NA NA prediction 0.562982299139972 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80469899 chr15:80469898 synonymous SNV . 0 20 hm7G_associated_SNPs_16302 0 0 1 3 1 FAH chr15:80469925 5'GT 80469925 Upstream 28bp 15537 chr14 58965518 58965518 1 + G T LUAD 58965519 + 58965499 58965539 41 AGGACTTGGAAAACAGTGTGGGTGAACTTAGTGAAGGACAA AGGACTTGGAAAACAGTGTTGGTGAACTTAGTGAAGGACAA < 41bp 0.531476723745867 0.81292734960464 NA NA prediction 0.562901251717546 Functional Gain - KIAA0586 ENSG00000100578 CDS Human protein_coding chr14:58965519 chr14:58965518 synonymous SNV . 0 20 hm7G_associated_SNPs_16305 0 0 0 0 1 KIAA0586 chr14:58965501 3'AG 58965501 Downstream 18bp 15538 chr1 100483247 100483247 1 + G T UCEC 100483248 + 100483228 100483268 41 AAAACTTCAGGCACTTGGAGGCCTTGTAATAGCTGCTGTTA AAAACTTCAGGCACTTGGATGCCTTGTAATAGCTGCTGTTA < 41bp 0.492798216030681 0.781419566801355 NA NA prediction 0.562839133602711 Functional Gain - SLC35A3 ENSG00000117620 CDS Human protein_coding chr1:100483248 chr1:100483247 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16311 0 0 1 0 1 SLC35A3 chr1:100483238 3'AG 100483238 Downstream 10bp 15539 chr7 129999525 129999525 1 + G T UCEC 129999526 + 129999506 129999546 41 CATCATACCACACCCTGGAGGAGGTAGGTCTGGCCGGGCAA CATCATACCACACCCTGGATGAGGTAGGTCTGGCCGGGCAA < 41bp 0.554658673197446 0.83607634712939 NA NA prediction 0.562835347863886 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:129999526 chr7:129999525 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_16312 0 0 0 0 2 CPA5 chr7:129999430 3'AG 129999430 Downstream 96bp 15540 chr7 129999525 129999525 1 + G T UCEC 129999526 + 129999506 129999546 41 CATCATACCACACCCTGGAGGAGGTAGGTCTGGCCGGGCAA CATCATACCACACCCTGGATGAGGTAGGTCTGGCCGGGCAA < 41bp 0.554658673197446 0.83607634712939 NA NA prediction 0.562835347863886 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:129999526 chr7:129999525 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_16312 0 0 0 0 2 CPA5 chr7:129999528 5'GT 129999528 Upstream 4bp 15541 chr3 101476715 101476715 1 + G T GBM 101476716 + 101476696 101476736 41 TCACCTACAGTTGAGCTGAGGCTGCAGGGCATTAACTTGGG TCACCTACAGTTGAGCTGATGCTGCAGGGCATTAACTTGGG < 41bp 0.546836444246959 0.828225670906762 NA NA prediction 0.562778453319606 Functional Gain - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101476716 chr3:101476715 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_16314 0 0 1 0 1 CEP97 chr3:101476655 3'AG 101476655 Downstream 61bp 15542 chr11 292918 292918 1 + G T UCEC 292919 + 292899 292939 41 TTCGAGAGGCTGGTGGCTGGGACGTGGTCAGGGCTGTGGCC TTCGAGAGGCTGGTGGCTGTGACGTGGTCAGGGCTGTGGCC < 41bp 0.577186153222215 0.85857336427799 NA NA prediction 0.562774422111551 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292919 chr11:292918 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_16315 0 0 1 0 3 PGGHG chr11:292886 3'AG 292886 Downstream 33bp 15543 chr11 292918 292918 1 + G T UCEC 292919 + 292899 292939 41 TTCGAGAGGCTGGTGGCTGGGACGTGGTCAGGGCTGTGGCC TTCGAGAGGCTGGTGGCTGTGACGTGGTCAGGGCTGTGGCC < 41bp 0.577186153222215 0.85857336427799 NA NA prediction 0.562774422111551 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292919 chr11:292918 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_16315 0 0 1 0 3 PGGHG chr11:292983 5'GT 292983 Upstream 66bp 15544 chr11 292918 292918 1 + G T UCEC 292919 + 292899 292939 41 TTCGAGAGGCTGGTGGCTGGGACGTGGTCAGGGCTGTGGCC TTCGAGAGGCTGGTGGCTGTGACGTGGTCAGGGCTGTGGCC < 41bp 0.577186153222215 0.85857336427799 NA NA prediction 0.562774422111551 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292919 chr11:292918 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_16315 0 0 1 0 3 PGGHG chr11:292997 5'GT 292997 Upstream 80bp 15545 chr19 2987200 2987200 1 + G T UCEC 2987201 + 2987181 2987221 41 ACTCTGGCGGATTTTTGCCGGCGTCCACGATGAGAAGGCAA ACTCTGGCGGATTTTTGCCTGCGTCCACGATGAGAAGGCAA < 41bp 0.455187370453696 0.781384529306858 NA NA prediction 0.562769058613716 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2987201 chr19:2987200 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_16316 0 0 0 0 1 TLE6 chr19:2987236 5'GT 2987236 Upstream 37bp 15546 chr6 36275460 36275460 1 + G T LUAD 36275461 + 36275441 36275481 41 AAGGCTTCCCAAGACATTCGGGATCCAAAAAACCAAGCAGC AAGGCTTCCCAAGACATTCTGGATCCAAAAAACCAAGCAGC < 41bp 0.512724850520893 0.794102442440466 NA NA prediction 0.562755183839146 Functional Gain - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36275461 chr6:36275460 synonymous SNV . 0 20 hm7G_associated_SNPs_16317 0 0 0 0 1 PNPLA1 chr6:36275364 3'AG 36275364 Downstream 97bp 15547 chr2 29404464 29404464 1 + G T LUAD 29404465 + 29404445 29404485 41 GCTGCTTTGCGTCGCAGTTGGAGCAGCACCCCCACCGCAGG GCTGCTTTGCGTCGCAGTTTGAGCAGCACCCCCACCGCAGG < 41bp 0.535897069015614 0.817254152823603 NA NA prediction 0.562714167615978 Functional Gain - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29404465 chr2:29404464 nonsynonymous SNV 0.953 2 20 hm7G_associated_SNPs_16318 0 0 0 0 1 CLIP4 chr2:29404438 3'AG 29404438 Downstream 27bp 15548 chr1 155838520 155838520 1 + G T UCEC 155838521 + 155838501 155838541 41 GGTCATGGTGCCACTGGCAGGGGTGGACCCCAGCACAGGCA GGTCATGGTGCCACTGGCATGGGTGGACCCCAGCACAGGCA < 41bp 0.456864822505968 0.781356168720064 NA NA prediction 0.562712337440128 Functional Gain - SYT11 ENSG00000132718 CDS Human protein_coding chr1:155838521 chr1:155838520 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_16319 0 0 0 0 1 SYT11 chr1:155838582 5'GT 155838582 Upstream 63bp 15549 chr2 234975197 234975197 1 + G T LUAD 234975198 + 234975178 234975218 41 TGATTTTTGGGGACATGTTGGGATCTCATAAATGGAGAAAC TGATTTTTGGGGACATGTTTGGATCTCATAAATGGAGAAAC < 41bp 0.526764475469882 0.808116647599245 NA NA prediction 0.562704344258727 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234975198 chr2:234975197 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16320 0 0 0 0 2 SPP2 chr2:234975177 3'AG 234975177 Downstream 21bp 15550 chr2 234975197 234975197 1 + G T LUAD 234975198 + 234975178 234975218 41 TGATTTTTGGGGACATGTTGGGATCTCATAAATGGAGAAAC TGATTTTTGGGGACATGTTTGGATCTCATAAATGGAGAAAC < 41bp 0.526764475469882 0.808116647599245 NA NA prediction 0.562704344258727 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234975198 chr2:234975197 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16320 0 0 0 0 2 SPP2 chr2:234975231 5'GT 234975231 Upstream 35bp 15551 chr19 45211210 45211210 1 + G T UCEC 45211211 + 45211191 45211231 41 CGTAACACTGACCGTGCAGGGCTACCCCAAGGACCTGCTGG CGTAACACTGACCGTGCAGTGCTACCCCAAGGACCTGCTGG < 41bp 0.568416996073908 0.849763439947247 NA NA prediction 0.562692887746678 Functional Gain - CEACAM16 ENSG00000213892 CDS Human protein_coding chr19:45211211 chr19:45211210 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_16321 0 0 0 0 1 CEACAM16 chr19:45211133 3'AG 45211133 Downstream 78bp 15552 chr8 99161154 99161154 1 + G T LUAD 99161155 + 99161135 99161175 41 GCAGCCAGGAAAAGTGACTGGTGAAGATCGACTAGGCTGGG GCAGCCAGGAAAAGTGACTTGTGAAGATCGACTAGGCTGGG < 41bp 0.560718299544391 0.842062589958522 NA NA prediction 0.562688580828261 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99161155 chr8:99161154 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16322 0 0 0 0 1 POP1 chr8:99161234 5'GT 99161234 Upstream 81bp 15553 chr3 44692722 44692722 1 + G T UCEC 44692723 + 44692703 44692743 41 AGTGCAGGGTCTTCAGACAGGCCTTGATGGATCAGAAGAGG AGTGCAGGGTCTTCAGACATGCCTTGATGGATCAGAAGAGG < 41bp 0.46159519659363 0.781319316578111 NA NA prediction 0.562638633156223 Functional Gain - ZNF35 ENSG00000169981 CDS Human protein_coding chr3:44692723 chr3:44692722 nonsynonymous SNV 0.576 0 20 hm7G_associated_SNPs_16325 0 0 1 0 1 ZNF35 chr3:44692751 5'GT 44692751 Upstream 30bp 15554 chr17 7578254 7578254 1 - C A HNSC 7578253 - 7578233 7578273 41 GCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGAGTATT GCATCTTATCCGAGTGGAATGAAATTTGCGTGTGGAGTATT < 41bp 0.481832741811976 0.78131152824418 NA NA prediction 0.562623056488359 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7578253 chr17:7578254 stopgain 0.988 1 20 hm7G_associated_SNPs_16326 0 0 1 0 3 TP53 chr17:7578172 5'GT 7578172 Upstream 83bp 15555 chr17 7578254 7578254 1 - C A HNSC 7578253 - 7578233 7578273 41 GCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGAGTATT GCATCTTATCCGAGTGGAATGAAATTTGCGTGTGGAGTATT < 41bp 0.481832741811976 0.78131152824418 NA NA prediction 0.562623056488359 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7578253 chr17:7578254 stopgain 0.988 1 20 hm7G_associated_SNPs_16326 0 0 1 0 3 TP53 chr17:7578177 5'GT 7578177 Upstream 78bp 15556 chr17 7578254 7578254 1 - C A HNSC 7578253 - 7578233 7578273 41 GCATCTTATCCGAGTGGAAGGAAATTTGCGTGTGGAGTATT GCATCTTATCCGAGTGGAATGAAATTTGCGTGTGGAGTATT < 41bp 0.481832741811976 0.78131152824418 NA NA prediction 0.562623056488359 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7578253 chr17:7578254 stopgain 0.988 1 20 hm7G_associated_SNPs_16326 0 0 1 0 3 TP53 chr17:7578289 3'AG 7578289 Downstream 36bp 15557 chr11 101929675 101929675 1 + G T UCEC 101929676 + 101929656 101929696 41 TCAGATTCTTCTGGACAATGGATCATATTAGGTAAATAAAA TCAGATTCTTCTGGACAATTGATCATATTAGGTAAATAAAA < 41bp 0.490390888726458 0.781302378472356 NA NA prediction 0.562604756944713 Functional Gain - C11orf70 ENSG00000137691 CDS Human protein_coding chr11:101929676 chr11:101929675 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16328 0 0 0 0 2 C11orf70 chr11:101929611 3'AG 101929611 Downstream 65bp 15558 chr11 101929675 101929675 1 + G T UCEC 101929676 + 101929656 101929696 41 TCAGATTCTTCTGGACAATGGATCATATTAGGTAAATAAAA TCAGATTCTTCTGGACAATTGATCATATTAGGTAAATAAAA < 41bp 0.490390888726458 0.781302378472356 NA NA prediction 0.562604756944713 Functional Gain - C11orf70 ENSG00000137691 CDS Human protein_coding chr11:101929676 chr11:101929675 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16328 0 0 0 0 2 C11orf70 chr11:101929686 5'GT 101929686 Upstream 12bp 15559 chr1 179620065 179620065 1 + G T LUSC 179620066 + 179620046 179620086 41 CGGTTTGAAGCCATTAGTGGGGGTAGTGGATGAATATGTAG CGGTTTGAAGCCATTAGTGTGGGTAGTGGATGAATATGTAG < 41bp 0.456075027498946 0.7812874389091 NA NA prediction 0.5625748778182 Functional Gain - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179620066 chr1:179620065 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_16331 0 0 0 0 1 TDRD5 chr1:179620002 3'AG 179620002 Downstream 64bp 15560 chr1 245246946 245246946 1 + G T UCS 245246947 + 245246927 245246967 41 TTAGATTCAGCTAAACGTGGGTTTCTTACTAAGGACGAGCT TTAGATTCAGCTAAACGTGTGTTTCTTACTAAGGACGAGCT < 41bp 0.532189012096423 0.813474228261881 NA NA prediction 0.562570432330915 Functional Gain - EFCAB2 ENSG00000203666 CDS Human protein_coding chr1:245246947 chr1:245246946 nonsynonymous SNV 0.896 5 20 hm7G_associated_SNPs_16332 0 0 1 0 2 EFCAB2 chr1:245246924 3'AG 245246924 Downstream 23bp 15561 chr1 245246946 245246946 1 + G T UCS 245246947 + 245246927 245246967 41 TTAGATTCAGCTAAACGTGGGTTTCTTACTAAGGACGAGCT TTAGATTCAGCTAAACGTGTGTTTCTTACTAAGGACGAGCT < 41bp 0.532189012096423 0.813474228261881 NA NA prediction 0.562570432330915 Functional Gain - EFCAB2 ENSG00000203666 CDS Human protein_coding chr1:245246947 chr1:245246946 nonsynonymous SNV 0.896 5 20 hm7G_associated_SNPs_16332 0 0 1 0 2 EFCAB2 chr1:245246990 5'GT 245246990 Upstream 45bp 15562 chr21 43646013 43646013 1 + G T UCEC 43646014 + 43645994 43646034 41 GTTCCTGAAGGACCCTGGTGGAGGAAGAAAGGTAGGGAGGG GTTCCTGAAGGACCCTGGTTGAGGAAGAAAGGTAGGGAGGG < 41bp 0.555100346722686 0.836373631236181 NA NA prediction 0.56254656902699 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43646014 chr21:43646013 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16333 0 0 1 0 1 ABCG1 chr21:43646024 5'GT 43646024 Upstream 12bp 15563 chr8 95844318 95844318 1 + G T UCEC 95844319 + 95844299 95844339 41 TGAGAACTCTAGATTTATTGGCCATGGAACCAGGCATGGTA TGAGAACTCTAGATTTATTTGCCATGGAACCAGGCATGGTA < 41bp 0.46815423990022 0.781268241097257 NA NA prediction 0.562536482194514 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95844319 chr8:95844318 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16336 0 0 1 0 2 INTS8 chr8:95844220 3'AG 95844220 Downstream 99bp 15564 chr8 95844318 95844318 1 + G T UCEC 95844319 + 95844299 95844339 41 TGAGAACTCTAGATTTATTGGCCATGGAACCAGGCATGGTA TGAGAACTCTAGATTTATTTGCCATGGAACCAGGCATGGTA < 41bp 0.46815423990022 0.781268241097257 NA NA prediction 0.562536482194514 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95844319 chr8:95844318 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16336 0 0 1 0 2 INTS8 chr8:95844402 5'GT 95844402 Upstream 85bp 15565 chr19 35170820 35170820 1 + G T SARC 35170821 + 35170801 35170841 41 GAGTAATGAAGAACTGGTGGGGCAGAATCATGGCATGGAAG GAGTAATGAAGAACTGGTGTGGCAGAATCATGGCATGGAAG < 41bp 0.46690512484255 0.781265010776019 NA NA prediction 0.562530021552038 Functional Gain - ZNF302 ENSG00000089335 CDS Human protein_coding chr19:35170821 chr19:35170820 nonsynonymous SNV 0.232 3 20 hm7G_associated_SNPs_16337 0 0 1 0 1 ZNF302 chr19:35170864 5'GT 35170864 Upstream 45bp 15566 chr18 29125689 29125689 1 + G T LUSC 29125690 + 29125670 29125710 41 TGTTTTCATTTTAGAAAGCGGCCTCTTACACTGAGGAAGAT TGTTTTCATTTTAGAAAGCTGCCTCTTACACTGAGGAAGAT < 41bp 0.520677872673429 0.801941413505629 NA NA prediction 0.5625270816644 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29125690 chr18:29125689 synonymous SNV . 0 20 hm7G_associated_SNPs_16338 0 0 1 0 1 DSG2 chr18:29125684 3'AG 29125684 Downstream 6bp 15567 chr17 41584454 41584454 1 + G T UCEC 41584455 + 41584435 41584475 41 TCACCCAGTACCTGGCGGAGGCAGGCTACACTTCCAGGGGC TCACCCAGTACCTGGCGGATGCAGGCTACACTTCCAGGGGC < 41bp 0.449939408953649 0.781253509006996 NA NA prediction 0.562507018013992 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41584455 chr17:41584454 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_16339 0 0 0 0 1 DHX8 chr17:41584371 3'AG 41584371 Downstream 84bp 15568 chr11 117109410 117109410 1 + G T UCEC 117109411 + 117109391 117109431 41 ATAACAGAAATGTCCATTTGGAGCACTCAGAGCAGAATCCT ATAACAGAAATGTCCATTTTGAGCACTCAGAGCAGAATCCT < 41bp 0.560444398199499 0.841683726689345 NA NA prediction 0.562478656979691 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117109411 chr11:117109410 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16341 0 0 1 0 2 RNF214 chr11:117109317 3'AG 117109317 Downstream 94bp 15569 chr11 117109410 117109410 1 + G T UCEC 117109411 + 117109391 117109431 41 ATAACAGAAATGTCCATTTGGAGCACTCAGAGCAGAATCCT ATAACAGAAATGTCCATTTTGAGCACTCAGAGCAGAATCCT < 41bp 0.560444398199499 0.841683726689345 NA NA prediction 0.562478656979691 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117109411 chr11:117109410 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16341 0 0 1 0 2 RNF214 chr11:117109362 3'AG 117109362 Downstream 49bp 15570 chr8 90933352 90933352 1 + G T UCEC 90933353 + 90933333 90933373 41 TCAGCTTTGGAAGTTGGATGGAACTACCTGGACTTAAATTT TCAGCTTTGGAAGTTGGATTGAACTACCTGGACTTAAATTT < 41bp 0.472424578631859 0.781236712568201 NA NA prediction 0.562473425136402 Functional Gain - OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90933353 chr8:90933352 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_16343 0 0 1 0 2 OSGIN2 chr8:90933308 3'AG 90933308 Downstream 45bp 15571 chr8 90933352 90933352 1 + G T UCEC 90933353 + 90933333 90933373 41 TCAGCTTTGGAAGTTGGATGGAACTACCTGGACTTAAATTT TCAGCTTTGGAAGTTGGATTGAACTACCTGGACTTAAATTT < 41bp 0.472424578631859 0.781236712568201 NA NA prediction 0.562473425136402 Functional Gain - OSGIN2 ENSG00000164823 CDS Human protein_coding chr8:90933353 chr8:90933352 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_16343 0 0 1 0 2 OSGIN2 chr8:90933399 5'GT 90933399 Upstream 48bp 15572 chr3 169981194 169981194 1 + G T THCA 169981195 + 169981175 169981215 41 TGTGTACCAGAACGTCCTGGGATGCCTTGTCCAGGAGAAGA TGTGTACCAGAACGTCCTGTGATGCCTTGTCCAGGAGAAGA < 41bp 0.49171902786091 0.781224628256377 NA NA prediction 0.562449256512754 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:169981195 chr3:169981194 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_16344 0 0 1 0 1 PRKCI chr3:169981217 5'GT 169981217 Upstream 24bp 15573 chr5 149931331 149931331 1 + G T UCEC 149931332 + 149931312 149931352 41 CAGGTTTGATCCAAAGAAAGGATTTTGGTGCCAACTGCTTG CAGGTTTGATCCAAAGAAATGATTTTGGTGCCAACTGCTTG < 41bp 0.560436363410235 0.841655465139346 NA NA prediction 0.562438203458221 Functional Gain - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149931332 chr5:149931331 stopgain 1.000 1 20 hm7G_associated_SNPs_16345 0 0 0 0 2 NDST1 chr5:149931315 3'AG 149931315 Downstream 17bp 15574 chr5 149931331 149931331 1 + G T UCEC 149931332 + 149931312 149931352 41 CAGGTTTGATCCAAAGAAAGGATTTTGGTGCCAACTGCTTG CAGGTTTGATCCAAAGAAATGATTTTGGTGCCAACTGCTTG < 41bp 0.560436363410235 0.841655465139346 NA NA prediction 0.562438203458221 Functional Gain - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149931332 chr5:149931331 stopgain 1.000 1 20 hm7G_associated_SNPs_16345 0 0 0 0 2 NDST1 chr5:149931417 5'GT 149931417 Upstream 87bp 15575 chr16 22277793 22277793 1 + G T LAML 22277794 + 22277774 22277814 41 GTGGCCCTGGAAGTGCAAAGGCTTAATGCTCTGGACCTCGA GTGGCCCTGGAAGTGCAAATGCTTAATGCTCTGGACCTCGA < 41bp 0.570886004275235 0.852100895519449 NA NA prediction 0.562429782488428 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22277794 chr16:22277793 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16346 0 0 1 0 2 EEF2K chr16:22277711 3'AG 22277711 Downstream 83bp 15576 chr16 22277793 22277793 1 + G T LAML 22277794 + 22277774 22277814 41 GTGGCCCTGGAAGTGCAAAGGCTTAATGCTCTGGACCTCGA GTGGCCCTGGAAGTGCAAATGCTTAATGCTCTGGACCTCGA < 41bp 0.570886004275235 0.852100895519449 NA NA prediction 0.562429782488428 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22277794 chr16:22277793 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16346 0 0 1 0 2 EEF2K chr16:22277845 5'GT 22277845 Upstream 53bp 15577 chr10 45877967 45877967 1 + G T LUAD 45877968 + 45877948 45877988 41 GACTGTGGACGAGGAACTGGGCGAGATCCAGCTGGTCAGAA GACTGTGGACGAGGAACTGTGCGAGATCCAGCTGGTCAGAA < 41bp 0.576978228351642 0.858180612018679 NA NA prediction 0.562404767334073 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45877968 chr10:45877967 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_16347 0 0 1 0 1 ALOX5 chr10:45877931 3'AG 45877931 Downstream 37bp 15578 chr11 124745053 124745053 1 + G T UCEC 124745054 + 124745034 124745074 41 GGTTTCCGGGTGTCTTGGAGGGTAGCAGGCCCTGAGGGAGG GGTTTCCGGGTGTCTTGGATGGTAGCAGGCCCTGAGGGAGG < 41bp 0.571463330228208 0.852664458100816 NA NA prediction 0.562402255745216 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124745054 chr11:124745053 nonsynonymous SNV 0.928 3 20 hm7G_associated_SNPs_16348 0 0 0 0 1 ROBO3 chr11:124745007 3'AG 124745007 Downstream 47bp 15579 chr20 47592583 47592583 1 + G T UCEC 47592584 + 47592564 47592604 41 CTCACGGATCAGGAAATAGGGGATGGGAAAGGCCTTGACAT CTCACGGATCAGGAAATAGTGGATGGGAAAGGCCTTGACAT < 41bp 0.458164897385624 0.781199918555869 NA NA prediction 0.562399837111739 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47592584 chr20:47592583 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_16349 0 0 1 0 1 ARFGEF2 chr20:47592553 3'AG 47592553 Downstream 31bp 15580 chr8 67763107 67763107 1 + G T LUSC 67763108 + 67763088 67763128 41 TTTTTGAATCACTCAGCTGGGCTGACCTTGTACAAAAGAAG TTTTTGAATCACTCAGCTGTGCTGACCTTGTACAAAAGAAG < 41bp 0.46882287495746 0.78119844975201 NA NA prediction 0.562396899504019 Functional Gain - C8orf44-SGK3;SGK3 ENSG00000104205;ENSG00000270024 CDS Human other chr8:67763108 chr8:67763107 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16350 0 0 1 0 2 C8orf44-SGK3;SGK3 chr8:67763066 3'AG 67763066 Downstream 42bp 15581 chr8 67763107 67763107 1 + G T LUSC 67763108 + 67763088 67763128 41 TTTTTGAATCACTCAGCTGGGCTGACCTTGTACAAAAGAAG TTTTTGAATCACTCAGCTGTGCTGACCTTGTACAAAAGAAG < 41bp 0.46882287495746 0.78119844975201 NA NA prediction 0.562396899504019 Functional Gain - C8orf44-SGK3;SGK3 ENSG00000104205;ENSG00000270024 CDS Human other chr8:67763108 chr8:67763107 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16350 0 0 1 0 2 C8orf44-SGK3;SGK3 chr8:67763155 5'GT 67763155 Upstream 49bp 15582 chr13 42742644 42742644 1 + G T LUAD 42742645 + 42742625 42742665 41 GGCGATGGAAGTGTAGGTTGGGTTTTGTCAGAAATCGATAA GGCGATGGAAGTGTAGGTTTGGTTTTGTCAGAAATCGATAA < 41bp 0.467366011569654 0.781174568550519 NA NA prediction 0.562349137101039 Functional Gain - DGKH ENSG00000102780 CDS Human protein_coding chr13:42742645 chr13:42742644 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16353 0 0 0 0 1 DGKH chr13:42742576 3'AG 42742576 Downstream 69bp 15583 chr19 49674891 49674891 1 + G T LUAD 49674892 + 49674872 49674912 41 TCCTCGTGGCTGGCTCAGGGGGAGCTGCGGACTGCCTGGCG TCCTCGTGGCTGGCTCAGGTGGAGCTGCGGACTGCCTGGCG < 41bp 0.440481058010027 0.781168505940051 NA NA prediction 0.562337011880103 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49674892 chr19:49674891 synonymous SNV . 0 20 hm7G_associated_SNPs_16355 0 0 1 0 1 TRPM4 chr19:49674835 3'AG 49674835 Downstream 57bp 15584 chr1 17552636 17552636 1 + G T UCEC 17552637 + 17552617 17552657 41 TCTGATTCCAAAAGAGTGAGGGTCTTCTGTGCCAGGGGTGA TCTGATTCCAAAAGAGTGATGGTCTTCTGTGCCAGGGGTGA < 41bp 0.568346709476806 0.849513243527033 NA NA prediction 0.562333068100453 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17552637 chr1:17552636 nonsynonymous SNV 0.049 3 20 hm7G_associated_SNPs_16356 0 0 0 0 1 PADI1 chr1:17552653 5'GT 17552653 Upstream 18bp 15585 chr8 82665358 82665358 1 + G T LUAD 82665359 + 82665339 82665379 41 ACAGCTCACTCAGATTGATGGCACACTTTCTACCATTGAGT ACAGCTCACTCAGATTGATTGCACACTTTCTACCATTGAGT < 41bp 0.454658089318565 0.781163810851576 NA NA prediction 0.562327621703153 Functional Gain - CHMP4C ENSG00000164695 CDS Human protein_coding chr8:82665359 chr8:82665358 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16357 0 0 0 0 1 CHMP4C chr8:82665299 3'AG 82665299 Downstream 60bp 15586 chr1 898615 898615 1 + G T BLCA 898616 + 898596 898636 41 GTGGCTGCGGTGGGGAACCGGCTCTATGCTGTGGGCGGGTA GTGGCTGCGGTGGGGAACCTGCTCTATGCTGTGGGCGGGTA < 41bp 0.57426261153147 0.855410508169684 NA NA prediction 0.562295793276429 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:898616 chr1:898615 nonsynonymous SNV 0.966 0 20 hm7G_associated_SNPs_16358 0 0 1 0 1 KLHL17 chr1:898633 5'GT 898633 Upstream 19bp 15587 chr5 115298953 115298953 1 + G T GBM 115298954 + 115298934 115298974 41 GCTTCTCGGGCCTGGTGAAGGAAGACCTCAGGGAGGGACTC GCTTCTCGGGCCTGGTGAATGAAGACCTCAGGGAGGGACTC < 41bp 0.553763700047598 0.834907321136017 NA NA prediction 0.562287242176837 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115298954 chr5:115298953 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16359 0 0 0 0 1 LVRN chr5:115299009 5'GT 115299009 Upstream 57bp 15588 chr7 101196625 101196625 1 + G T OV 101196626 + 101196606 101196646 41 GGGTGAACCTGGCGTGAAGGGGGAAGAAGGAGAGAAAGCCG GGGTGAACCTGGCGTGAAGTGGGAAGAAGGAGAGAAAGCCG < 41bp 0.538325705687691 0.819466087079383 NA NA prediction 0.562280762783384 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101196626 chr7:101196625 nonsynonymous SNV 0.095 2 20 hm7G_associated_SNPs_16361 0 0 0 0 1 COL26A1 chr7:101196657 5'GT 101196657 Upstream 33bp 15589 chr20 39791854 39791854 1 + G T UCEC 39791855 + 39791835 39791875 41 CCCTGCAGGGCTGGGGAGCGGCCGGAGCTTTGCCGAGTGTC CCCTGCAGGGCTGGGGAGCTGCCGGAGCTTTGCCGAGTGTC < 41bp 0.446986476922642 0.781121027229222 NA NA prediction 0.562242054458443 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39791855 chr20:39791854 nonsynonymous SNV 0.970 1 20 hm7G_associated_SNPs_16362 0 0 1 0 2 PLCG1 chr20:39791843 3'AG 39791843 Downstream 12bp 15590 chr20 39791854 39791854 1 + G T UCEC 39791855 + 39791835 39791875 41 CCCTGCAGGGCTGGGGAGCGGCCGGAGCTTTGCCGAGTGTC CCCTGCAGGGCTGGGGAGCTGCCGGAGCTTTGCCGAGTGTC < 41bp 0.446986476922642 0.781121027229222 NA NA prediction 0.562242054458443 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39791855 chr20:39791854 nonsynonymous SNV 0.970 1 20 hm7G_associated_SNPs_16362 0 0 1 0 2 PLCG1 chr20:39791915 5'GT 39791915 Upstream 62bp 15591 chr1 906108 906108 1 + G T BRCA 906109 + 906089 906129 41 GAGTGTCTGCCCGCTCGAGGGGTCCCGAGAGCACGCCTTCC GAGTGTCTGCCCGCTCGAGTGGTCCCGAGAGCACGCCTTCC < 41bp 0.57435555762882 0.855462005993264 NA NA prediction 0.562212896728888 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906109 chr1:906108 nonsynonymous SNV 0.484 3 20 hm7G_associated_SNPs_16364 0 0 0 0 2 PLEKHN1 chr1:906066 3'AG 906066 Downstream 43bp 15592 chr1 906108 906108 1 + G T BRCA 906109 + 906089 906129 41 GAGTGTCTGCCCGCTCGAGGGGTCCCGAGAGCACGCCTTCC GAGTGTCTGCCCGCTCGAGTGGTCCCGAGAGCACGCCTTCC < 41bp 0.57435555762882 0.855462005993264 NA NA prediction 0.562212896728888 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906109 chr1:906108 nonsynonymous SNV 0.484 3 20 hm7G_associated_SNPs_16364 0 0 0 0 2 PLEKHN1 chr1:906138 5'GT 906138 Upstream 31bp 15593 chr9 71851101 71851101 1 + G T SKCM 71851102 + 71851082 71851122 41 GCAAGCTGGGCAACTGGCTGGCTGTGAGGATTGGGAACGAG GCAAGCTGGGCAACTGGCTTGCTGTGAGGATTGGGAACGAG < 41bp 0.578397238649487 0.859496219698854 NA NA prediction 0.562197962098734 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851102 chr9:71851101 synonymous SNV . 0 20 hm7G_associated_SNPs_16366 0 0 1 0 1 TJP2 chr9:71851154 5'GT 71851154 Upstream 54bp 15594 chr16 57255297 57255297 1 + G T LUAD 57255298 + 57255278 57255318 41 GCGTCATGCAGATTGGCTGGGCCACTCGAGACAGCAAATTC GCGTCATGCAGATTGGCTGTGCCACTCGAGACAGCAAATTC < 41bp 0.57557165144495 0.856651799348283 NA NA prediction 0.562160295806666 Functional Gain - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57255298 chr16:57255297 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16367 0 0 1 0 1 RSPRY1 chr16:57255327 5'GT 57255327 Upstream 31bp 15595 chr17 16335327 16335327 1 + G T UCEC 16335328 + 16335308 16335348 41 GCGCCCCGAAGCTCCTACAGGCCCCAATGCCACAGAGTCAG GCGCCCCGAAGCTCCTACATGCCCCAATGCCACAGAGTCAG < 41bp 0.450108509327703 0.781072622125245 NA NA prediction 0.56214524425049 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335328 chr17:16335327 nonsynonymous SNV 0.007 2 20 hm7G_associated_SNPs_16370 0 0 1 0 1 TRPV2 chr17:16335280 3'AG 16335280 Downstream 48bp 15596 chr5 110407195 110407195 1 + G T COAD 110407196 + 110407176 110407216 41 ACACTTATGAAGTGTTTAGGGCAAAGCAAAAAGGAGGAAGG ACACTTATGAAGTGTTTAGTGCAAAGCAAAAAGGAGGAAGG < 41bp 0.505530082150225 0.78659977644153 NA NA prediction 0.562139388582611 Functional Gain - TSLP ENSG00000145777 CDS Human protein_coding chr5:110407196 chr5:110407195 nonsynonymous SNV 0.029 1 20 hm7G_associated_SNPs_16372 0 0 0 1 1 TSLP chr5:110407215 5'GT 110407215 Upstream 21bp 15597 chr1 100349740 100349740 1 + G T COAD 100349741 + 100349721 100349761 41 ACACGAAACCTTATAGGAAGGATGAGAATTCAATCAATGGA ACACGAAACCTTATAGGAATGATGAGAATTCAATCAATGGA < 41bp 0.528094152196234 0.809160040038225 NA NA prediction 0.562131775683983 Functional Gain - AGL ENSG00000162688 CDS Human protein_coding chr1:100349741 chr1:100349740 nonsynonymous SNV 0.911 2 20 hm7G_associated_SNPs_16374 0 0 1 0 2 AGL chr1:100349676 3'AG 100349676 Downstream 65bp 15598 chr1 100349740 100349740 1 + G T COAD 100349741 + 100349721 100349761 41 ACACGAAACCTTATAGGAAGGATGAGAATTCAATCAATGGA ACACGAAACCTTATAGGAATGATGAGAATTCAATCAATGGA < 41bp 0.528094152196234 0.809160040038225 NA NA prediction 0.562131775683983 Functional Gain - AGL ENSG00000162688 CDS Human protein_coding chr1:100349741 chr1:100349740 nonsynonymous SNV 0.911 2 20 hm7G_associated_SNPs_16374 0 0 1 0 2 AGL chr1:100349800 5'GT 100349800 Upstream 61bp 15599 chr20 60773698 60773698 1 + G T SARC 60773699 + 60773679 60773719 41 CTGTTCCCCAGGTCCCCGTGGGCACGCTGGTGAAGGAGGGA CTGTTCCCCAGGTCCCCGTTGGCACGCTGGTGAAGGAGGGA < 41bp 0.442517493348461 0.781050581669594 NA NA prediction 0.562101163339187 Functional Gain - MTG2 ENSG00000101181 CDS Human protein_coding chr20:60773699 chr20:60773698 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_16376 0 0 1 0 1 MTG2 chr20:60773690 3'AG 60773690 Downstream 9bp 15600 chr2 58350361 58350361 1 + G T LUSC 58350362 + 58350342 58350382 41 CCAGCTTGGATGCCCACAAGGGAGTAGGTGGGTTTCTTTTT CCAGCTTGGATGCCCACAATGGAGTAGGTGGGTTTCTTTTT < 41bp 0.537849559757409 0.81886095465289 NA NA prediction 0.562022789790961 Functional Gain - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58350362 chr2:58350361 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_16379 0 0 1 0 1 VRK2 chr2:58350368 5'GT 58350368 Upstream 8bp 15601 chr1 231133000 231133000 1 + G T UCEC 231133001 + 231132981 231133021 41 ATGCCATCTTTAAATCTCAGGACTTCTGAAGAGGTACTGAA ATGCCATCTTTAAATCTCATGACTTCTGAAGAGGTACTGAA < 41bp 0.533945521480216 0.814946317081653 NA NA prediction 0.562001591202874 Functional Gain - ARV1 ENSG00000173409 CDS Human protein_coding chr1:231133001 chr1:231133000 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_16381 0 0 1 0 1 ARV1 chr1:231133013 5'GT 231133013 Upstream 14bp 15602 chrX 14550448 14550448 1 + G T LUSC 14550449 + 14550429 14550469 41 ATTTCTTGGACAAGTTAATGGGAAGGACATCAGGATATGAT ATTTCTTGGACAAGTTAATTGGAAGGACATCAGGATATGAT < 41bp 0.545444785587473 0.826440255507127 NA NA prediction 0.561990939839309 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550449 chrX:14550448 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16382 0 0 0 0 2 GLRA2 chrX:14550361 3'AG 14550361 Downstream 88bp 15603 chrX 14550448 14550448 1 + G T LUSC 14550449 + 14550429 14550469 41 ATTTCTTGGACAAGTTAATGGGAAGGACATCAGGATATGAT ATTTCTTGGACAAGTTAATTGGAAGGACATCAGGATATGAT < 41bp 0.545444785587473 0.826440255507127 NA NA prediction 0.561990939839309 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550449 chrX:14550448 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16382 0 0 0 0 2 GLRA2 chrX:14550494 5'GT 14550494 Upstream 47bp 15604 chr2 66667050 66667050 1 + G T ACC 66667051 + 66667031 66667071 41 GTACCCCCCGCGAGCCGGGGGTGGCGGGCGGGGACGTCTGC GTACCCCCCGCGAGCCGGGTGTGGCGGGCGGGGACGTCTGC < 41bp 0.549864943208122 0.830848371967051 NA NA prediction 0.561966857517856 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66667051 chr2:66667050 synonymous SNV . 0 20 hm7G_associated_SNPs_16383 0 0 0 0 2 MEIS1 chr2:66666975 3'AG 66666975 Downstream 76bp 15605 chr2 66667050 66667050 1 + G T ACC 66667051 + 66667031 66667071 41 GTACCCCCCGCGAGCCGGGGGTGGCGGGCGGGGACGTCTGC GTACCCCCCGCGAGCCGGGTGTGGCGGGCGGGGACGTCTGC < 41bp 0.549864943208122 0.830848371967051 NA NA prediction 0.561966857517856 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66667051 chr2:66667050 synonymous SNV . 0 20 hm7G_associated_SNPs_16383 0 0 0 0 2 MEIS1 chr2:66667116 5'GT 66667116 Upstream 67bp 15606 chr7 134931235 134931235 1 + G T LUSC 134931236 + 134931216 134931256 41 GGATCATTACCCCGCAGGAGGCGGCGCTGCCCATCGTCTCC GGATCATTACCCCGCAGGATGCGGCGCTGCCCATCGTCTCC < 41bp 0.577512865417814 0.858493957761221 NA NA prediction 0.561962184686813 Functional Gain - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134931236 chr7:134931235 nonsynonymous SNV 0.097 1 20 hm7G_associated_SNPs_16384 0 0 0 0 1 STRA8 chr7:134931169 3'AG 134931169 Downstream 67bp 15607 chrX 37668896 37668896 1 + G T UCEC 37668897 + 37668877 37668917 41 CAAAAGACTTTGTATGGACGGCCCAACTGGGATAATGAATT CAAAAGACTTTGTATGGACTGCCCAACTGGGATAATGAATT < 41bp 0.547169802433948 0.828150443892724 NA NA prediction 0.561961282917554 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37668897 chrX:37668896 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16385 0 0 0 0 2 CYBB chrX:37668820 3'AG 37668820 Downstream 77bp 15608 chrX 37668896 37668896 1 + G T UCEC 37668897 + 37668877 37668917 41 CAAAAGACTTTGTATGGACGGCCCAACTGGGATAATGAATT CAAAAGACTTTGTATGGACTGCCCAACTGGGATAATGAATT < 41bp 0.547169802433948 0.828150443892724 NA NA prediction 0.561961282917554 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37668897 chrX:37668896 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16385 0 0 0 0 2 CYBB chrX:37668944 5'GT 37668944 Upstream 49bp 15609 chr2 190606068 190606068 1 + G T UCEC 190606069 + 190606049 190606089 41 TTTCTTGTTTAATTTATAGGGAATTTAATAGCAAGCCTGGC TTTCTTGTTTAATTTATAGTGAATTTAATAGCAAGCCTGGC < 41bp 0.495454886511419 0.780976148408863 NA NA prediction 0.561952296817726 Functional Gain - ANKAR ENSG00000151687 CDS Human protein_coding chr2:190606069 chr2:190606068 nonsynonymous SNV 0.914 4 20 hm7G_associated_SNPs_16386 0 0 0 3 1 ANKAR chr2:190606068 3'AG 190606068 Downstream 1bp 15610 chr8 21847891 21847891 1 + G T STAD 21847892 + 21847872 21847912 41 AGCTAGTGAAGCTTAGTGCGGTACAGTTCATGCTGAACAAT AGCTAGTGAAGCTTAGTGCTGTACAGTTCATGCTGAACAAT < 41bp 0.462685209698693 0.780960431092175 NA NA prediction 0.561920862184349 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21847892 chr8:21847891 synonymous SNV . 0 20 hm7G_associated_SNPs_16387 0 0 1 0 1 XPO7 chr8:21847918 5'GT 21847918 Upstream 28bp 15611 chr22 41622690 41622690 1 + G T SKCM 41622691 + 41622671 41622711 41 GAGGCACAGACTTTCAACTGGGAGAACTACTTGGAGAAGAC GAGGCACAGACTTTCAACTTGGAGAACTACTTGGAGAAGAC < 41bp 0.451708478059847 0.780956014483253 NA NA prediction 0.561912028966506 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41622691 chr22:41622690 nonsynonymous SNV 0.840 4 20 hm7G_associated_SNPs_16388 0 0 1 0 2 L3MBTL2 chr22:41622666 3'AG 41622666 Downstream 25bp 15612 chr22 41622690 41622690 1 + G T SKCM 41622691 + 41622671 41622711 41 GAGGCACAGACTTTCAACTGGGAGAACTACTTGGAGAAGAC GAGGCACAGACTTTCAACTTGGAGAACTACTTGGAGAAGAC < 41bp 0.451708478059847 0.780956014483253 NA NA prediction 0.561912028966506 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41622691 chr22:41622690 nonsynonymous SNV 0.840 4 20 hm7G_associated_SNPs_16388 0 0 1 0 2 L3MBTL2 chr22:41622748 5'GT 41622748 Upstream 59bp 15613 chr19 18274087 18274087 1 + G T UCEC 18274088 + 18274068 18274108 41 TCCAGGACCAGATTGTCAAGGAGGACAGCGTGGAGGCAGTG TCCAGGACCAGATTGTCAATGAGGACAGCGTGGAGGCAGTG < 41bp 0.573686030157978 0.854616759496724 NA NA prediction 0.561861458677492 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18274088 chr19:18274087 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_16391 0 0 1 0 1 PIK3R2 chr19:18274073 3'AG 18274073 Downstream 15bp 15614 chr2 56419697 56419697 1 + G T UCEC 56419698 + 56419678 56419718 41 GACCGGCAGAAAGGCAAGAGGGTGTCTCGGGAGTGGCAGAG GACCGGCAGAAAGGCAAGATGGTGTCTCGGGAGTGGCAGAG < 41bp 0.462700151483346 0.780927184745681 NA NA prediction 0.561854369491363 Functional Gain - CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56419698 chr2:56419697 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16392 0 0 0 0 1 CCDC85A chr2:56419612 3'AG 56419612 Downstream 86bp 15615 chr8 121468901 121468901 1 + G T UCEC 121468902 + 121468882 121468922 41 GGGGGAAAATACAGATATGGGAAAGAAAGGTAAATGGATTA GGGGGAAAATACAGATATGTGAAAGAAAGGTAAATGGATTA < 41bp 0.480777035371089 0.780920296244354 NA NA prediction 0.561840592488708 Functional Gain - MTBP ENSG00000172167 CDS Human protein_coding chr8:121468902 chr8:121468901 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16393 0 0 1 0 1 MTBP chr8:121468910 5'GT 121468910 Upstream 10bp 15616 chr11 65113142 65113142 1 + G T BLCA 65113143 + 65113123 65113163 41 TTCTTCCCACTCAGTTTGTGGAAAACGTTACAAGAACCGAC TTCTTCCCACTCAGTTTGTTGAAAACGTTACAAGAACCGAC < 41bp 0.566285588514974 0.847191223032761 NA NA prediction 0.561811269035574 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113143 chr11:65113142 stopgain 1.000 0 20 hm7G_associated_SNPs_16400 0 0 1 0 1 DPF2 chr11:65113137 3'AG 65113137 Downstream 6bp 15617 chr15 97328310 97328310 1 + G T GBM 97328311 + 97328291 97328331 41 CTGATTCAGAAGATAAACAGGAGAAGTGTCCTGTTTCACCC CTGATTCAGAAGATAAACATGAGAAGTGTCCTGTTTCACCC < 41bp 0.518368468654107 0.799260492663671 NA NA prediction 0.561784048019129 Functional Gain - SPATA8 ENSG00000185594 CDS Human protein_coding chr15:97328311 chr15:97328310 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_16403 0 0 0 0 1 SPATA8 chr15:97328226 3'AG 97328226 Downstream 85bp 15618 chr13 58240848 58240848 1 + G T COAD 58240849 + 58240829 58240869 41 CTGAGAGACAGTGGGCACGGGGACAGTGATCAGGCTGACAG CTGAGAGACAGTGGGCACGTGGACAGTGATCAGGCTGACAG < 41bp 0.536609882791491 0.817498438154359 NA NA prediction 0.561777110725736 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58240849 chr13:58240848 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16404 0 0 1 0 2 PCDH17 chr13:58240795 3'AG 58240795 Downstream 54bp 15619 chr13 58240848 58240848 1 + G T COAD 58240849 + 58240829 58240869 41 CTGAGAGACAGTGGGCACGGGGACAGTGATCAGGCTGACAG CTGAGAGACAGTGGGCACGTGGACAGTGATCAGGCTGACAG < 41bp 0.536609882791491 0.817498438154359 NA NA prediction 0.561777110725736 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58240849 chr13:58240848 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16404 0 0 1 0 2 PCDH17 chr13:58240798 3'AG 58240798 Downstream 51bp 15620 chr3 44893381 44893381 1 + G T STAD 44893382 + 44893362 44893402 41 TGGAGTCTAAAGCATTCCAGGAAAAAGAACAACTGAGATCA TGGAGTCTAAAGCATTCCATGAAAAAGAACAACTGAGATCA < 41bp 0.549917914975679 0.830796908179743 NA NA prediction 0.561757986408128 Functional Gain - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44893382 chr3:44893381 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_16405 0 0 0 0 1 KIF15 chr3:44893444 5'GT 44893444 Upstream 64bp 15621 chr20 62729242 62729242 1 + G T LGG 62729243 + 62729223 62729263 41 TGCTGACGCTGCCCTTCCAGGGCACGGACATCCTCCTGGGC TGCTGACGCTGCCCTTCCATGGCACGGACATCCTCCTGGGC < 41bp 0.438774046505148 0.780877821438256 NA NA prediction 0.561755642876511 Functional Gain - OPRL1 ENSG00000125510 CDS Human protein_coding chr20:62729243 chr20:62729242 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16406 0 0 0 0 1 OPRL1 chr20:62729155 3'AG 62729155 Downstream 88bp 15622 chr17 2275749 2275749 1 + G T UCEC 2275750 + 2275730 2275770 41 CCTCCGCGGGCCTCACCAAGGACGTGTGGAGCAAGTATCAG CCTCCGCGGGCCTCACCAATGACGTGTGGAGCAAGTATCAG < 41bp 0.4384301063672 0.780876077525828 NA NA prediction 0.561752155051657 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2275750 chr17:2275749 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16407 0 0 1 0 1 SGSM2 chr17:2275782 5'GT 2275782 Upstream 34bp 15623 chr7 142564758 142564758 1 + G T LUAD 142564759 + 142564739 142564779 41 ATCTATGGTTTCCAGGTGCGGGCCCGGACTGCTGCCGGCCA ATCTATGGTTTCCAGGTGCTGGCCCGGACTGCTGCCGGCCA < 41bp 0.575880679985063 0.856748509515817 NA NA prediction 0.561735659061508 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564759 chr7:142564758 nonsynonymous SNV 0.907 3 20 hm7G_associated_SNPs_16408 0 0 0 0 3 EPHB6 chr7:142564661 3'AG 142564661 Downstream 98bp 15624 chr7 142564758 142564758 1 + G T LUAD 142564759 + 142564739 142564779 41 ATCTATGGTTTCCAGGTGCGGGCCCGGACTGCTGCCGGCCA ATCTATGGTTTCCAGGTGCTGGCCCGGACTGCTGCCGGCCA < 41bp 0.575880679985063 0.856748509515817 NA NA prediction 0.561735659061508 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564759 chr7:142564758 nonsynonymous SNV 0.907 3 20 hm7G_associated_SNPs_16408 0 0 0 0 3 EPHB6 chr7:142564696 3'AG 142564696 Downstream 63bp 15625 chr7 142564758 142564758 1 + G T LUAD 142564759 + 142564739 142564779 41 ATCTATGGTTTCCAGGTGCGGGCCCGGACTGCTGCCGGCCA ATCTATGGTTTCCAGGTGCTGGCCCGGACTGCTGCCGGCCA < 41bp 0.575880679985063 0.856748509515817 NA NA prediction 0.561735659061508 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564759 chr7:142564758 nonsynonymous SNV 0.907 3 20 hm7G_associated_SNPs_16408 0 0 0 0 3 EPHB6 chr7:142564823 5'GT 142564823 Upstream 66bp 15626 chr19 55146195 55146195 1 + G T HNSC 55146196 + 55146176 55146216 41 TCCTCCGACATCGACGTCAGGGCAAACACTGGACATCGAGT TCCTCCGACATCGACGTCATGGCAAACACTGGACATCGAGT < 41bp 0.457828996272396 0.780821446481413 NA NA prediction 0.561642892962826 Functional Gain - LILRB1 ENSG00000104972 CDS Human protein_coding chr19:55146196 chr19:55146195 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_16413 0 0 0 1 1 LILRB1 chr19:55146214 5'GT 55146214 Upstream 20bp 15627 chr16 50338315 50338315 1 + G T UCEC 50338316 + 50338296 50338336 41 AACACCTCCCCAGGCCCAAGGGGGACGCGGCCCTGAAGATG AACACCTCCCCAGGCCCAATGGGGACGCGGCCCTGAAGATG < 41bp 0.441302962555765 0.780795644571434 NA NA prediction 0.561591289142867 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50338316 chr16:50338315 nonsynonymous SNV 0.884 1 20 hm7G_associated_SNPs_16418 0 0 1 0 1 ADCY7 chr16:50338271 3'AG 50338271 Downstream 45bp 15628 chr1 247607377 247607377 1 + G T LUAD 247607378 + 247607358 247607398 41 CCTGCGAGGCAACACTCTCGGAGACAAGGGGATCAAACTAC CCTGCGAGGCAACACTCTCTGAGACAAGGGGATCAAACTAC < 41bp 0.566054275511889 0.846841230326001 NA NA prediction 0.561573909628224 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247607378 chr1:247607377 stopgain 0.035 0 20 hm7G_associated_SNPs_16419 0 0 0 0 1 NLRP3 chr1:247607444 5'GT 247607444 Upstream 68bp 15629 chr1 236883436 236883436 1 + G T LUSC 236883437 + 236883417 236883457 41 GCAACGTGAAAATGACCCTGGGTATGATCTGGACCATCATC GCAACGTGAAAATGACCCTTGGTATGATCTGGACCATCATC < 41bp 0.493854117398074 0.780784699720216 NA NA prediction 0.561569399440432 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236883437 chr1:236883436 synonymous SNV . 0 20 hm7G_associated_SNPs_16420 0 0 0 0 2 ACTN2 chr1:236883405 3'AG 236883405 Downstream 32bp 15630 chr1 236883436 236883436 1 + G T LUSC 236883437 + 236883417 236883457 41 GCAACGTGAAAATGACCCTGGGTATGATCTGGACCATCATC GCAACGTGAAAATGACCCTTGGTATGATCTGGACCATCATC < 41bp 0.493854117398074 0.780784699720216 NA NA prediction 0.561569399440432 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236883437 chr1:236883436 synonymous SNV . 0 20 hm7G_associated_SNPs_16420 0 0 0 0 2 ACTN2 chr1:236883491 5'GT 236883491 Upstream 56bp 15631 chr17 43213514 43213514 1 + G T LUAD 43213515 + 43213495 43213535 41 CCAGGGCTCGCAGCAGCATGGGCACCGAGAAAGAAAGCCCA CCAGGGCTCGCAGCAGCATTGGCACCGAGAAAGAAAGCCCA < 41bp 0.55908321213726 0.839864595769441 NA NA prediction 0.561562767264363 Functional Gain - ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43213515 chr17:43213514 nonsynonymous SNV 0.793 3 20 hm7G_associated_SNPs_16421 0 0 0 0 2 ACBD4 chr17:43213475 3'AG 43213475 Downstream 40bp 15632 chr17 43213514 43213514 1 + G T LUAD 43213515 + 43213495 43213535 41 CCAGGGCTCGCAGCAGCATGGGCACCGAGAAAGAAAGCCCA CCAGGGCTCGCAGCAGCATTGGCACCGAGAAAGAAAGCCCA < 41bp 0.55908321213726 0.839864595769441 NA NA prediction 0.561562767264363 Functional Gain - ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43213515 chr17:43213514 nonsynonymous SNV 0.793 3 20 hm7G_associated_SNPs_16421 0 0 0 0 2 ACBD4 chr17:43213599 5'GT 43213599 Upstream 86bp 15633 chr10 116710901 116710901 1 + G T LGG 116710902 + 116710882 116710922 41 TTGACCAGTATGTTGTCAGGGTCCAAGGTAAGAATACTGAA TTGACCAGTATGTTGTCAGTGTCCAAGGTAAGAATACTGAA < 41bp 0.492301253373912 0.780778209706413 NA NA prediction 0.561556419412825 Functional Gain - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116710902 chr10:116710901 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16422 0 0 1 0 2 TRUB1 chr10:116710853 3'AG 116710853 Downstream 49bp 15634 chr10 116710901 116710901 1 + G T LGG 116710902 + 116710882 116710922 41 TTGACCAGTATGTTGTCAGGGTCCAAGGTAAGAATACTGAA TTGACCAGTATGTTGTCAGTGTCCAAGGTAAGAATACTGAA < 41bp 0.492301253373912 0.780778209706413 NA NA prediction 0.561556419412825 Functional Gain - TRUB1 ENSG00000165832 CDS Human protein_coding chr10:116710902 chr10:116710901 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16422 0 0 1 0 2 TRUB1 chr10:116710908 5'GT 116710908 Upstream 8bp 15635 chr12 110348891 110348891 1 + G T CESC 110348892 + 110348872 110348912 41 CAGACAGGCGGATCCTGCAGGCCCTCCTCGAGAAGGAGGAC CAGACAGGCGGATCCTGCATGCCCTCCTCGAGAAGGAGGAC < 41bp 0.580634214113473 0.86141064982173 NA NA prediction 0.561552871416514 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110348892 chr12:110348891 nonsynonymous SNV 0.821 1 20 hm7G_associated_SNPs_16423 0 0 1 0 1 TCHP chr12:110348868 3'AG 110348868 Downstream 24bp 15636 chr6 86201801 86201801 1 + G T COAD 86201802 + 86201782 86201822 41 GTTATGACCCTCTCAAAATGGACGAGGTATATAAGGTGATC GTTATGACCCTCTCAAAATTGACGAGGTATATAAGGTGATC < 41bp 0.464907643793836 0.780773782818619 NA NA prediction 0.561547565637238 Functional Gain - NT5E ENSG00000135318 CDS Human protein_coding chr6:86201802 chr6:86201801 nonsynonymous SNV 0.513 0 20 hm7G_associated_SNPs_16424 0 0 0 0 1 NT5E chr6:86201895 5'GT 86201895 Upstream 95bp 15637 chr21 47409015 47409015 1 + G T THCA 47409016 + 47408996 47409036 41 AGGGAGAACGAGGCAAGCCGGGGCTCCCAGGAGAGAAGGGA AGGGAGAACGAGGCAAGCCTGGGCTCCCAGGAGAGAAGGGA < 41bp 0.583560107980223 0.864333195617367 NA NA prediction 0.561546175274287 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409016 chr21:47409015 synonymous SNV . 0 20 hm7G_associated_SNPs_16425 0 0 0 0 2 COL6A1 chr21:47408998 3'AG 47408998 Downstream 18bp 15638 chr21 47409015 47409015 1 + G T THCA 47409016 + 47408996 47409036 41 AGGGAGAACGAGGCAAGCCGGGGCTCCCAGGAGAGAAGGGA AGGGAGAACGAGGCAAGCCTGGGCTCCCAGGAGAGAAGGGA < 41bp 0.583560107980223 0.864333195617367 NA NA prediction 0.561546175274287 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409016 chr21:47409015 synonymous SNV . 0 20 hm7G_associated_SNPs_16425 0 0 0 0 2 COL6A1 chr21:47409051 5'GT 47409051 Upstream 37bp 15639 chr5 137519724 137519724 1 + G T STAD 137519725 + 137519705 137519745 41 TGAACGGTTGAAGGAAGCAGGAAACATTAACACCTCTCTAC TGAACGGTTGAAGGAAGCATGAAACATTAACACCTCTCTAC < 41bp 0.455656172080892 0.780770977416366 NA NA prediction 0.561541954832732 Functional Gain - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137519725 chr5:137519724 stopgain 1.000 1 20 hm7G_associated_SNPs_16426 0 0 1 0 2 KIF20A chr5:137519651 3'AG 137519651 Downstream 74bp 15640 chr5 137519724 137519724 1 + G T STAD 137519725 + 137519705 137519745 41 TGAACGGTTGAAGGAAGCAGGAAACATTAACACCTCTCTAC TGAACGGTTGAAGGAAGCATGAAACATTAACACCTCTCTAC < 41bp 0.455656172080892 0.780770977416366 NA NA prediction 0.561541954832732 Functional Gain - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137519725 chr5:137519724 stopgain 1.000 1 20 hm7G_associated_SNPs_16426 0 0 1 0 2 KIF20A chr5:137519794 5'GT 137519794 Upstream 71bp 15641 chr5 79368169 79368169 1 + G T STAD 79368170 + 79368150 79368190 41 ACGGGACAAGGATGGTGATGGTGTGGGGGATGCCTGTGACA ACGGGACAAGGATGGTGATTGTGTGGGGGATGCCTGTGACA < 41bp 0.553621402957056 0.834390366584015 NA NA prediction 0.561537927253918 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79368170 chr5:79368169 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16427 0 0 0 0 2 THBS4 chr5:79368101 3'AG 79368101 Downstream 69bp 15642 chr5 79368169 79368169 1 + G T STAD 79368170 + 79368150 79368190 41 ACGGGACAAGGATGGTGATGGTGTGGGGGATGCCTGTGACA ACGGGACAAGGATGGTGATTGTGTGGGGGATGCCTGTGACA < 41bp 0.553621402957056 0.834390366584015 NA NA prediction 0.561537927253918 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79368170 chr5:79368169 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16427 0 0 0 0 2 THBS4 chr5:79368219 5'GT 79368219 Upstream 51bp 15643 chr6 18166504 18166504 1 + G T UCEC 18166505 + 18166485 18166525 41 TCTTGTTTTTCAGCCATAAGGATGGATATGACAAATATACT TCTTGTTTTTCAGCCATAATGATGGATATGACAAATATACT < 41bp 0.487675392052163 0.780766205072901 NA NA prediction 0.561532410145802 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18166505 chr6:18166504 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_16428 0 0 0 0 1 KDM1B chr6:18166498 3'AG 18166498 Downstream 7bp 15644 chr4 83375989 83375989 1 + G T UCEC 83375990 + 83375970 83376010 41 TGTTATTCGGGCATTCTACGGAGGGAGATATTCTTGAGGTA TGTTATTCGGGCATTCTACTGAGGGAGATATTCTTGAGGTA < 41bp 0.553203091719877 0.833957307035964 NA NA prediction 0.561508430632176 Functional Gain - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83375990 chr4:83375989 synonymous SNV . 0 20 hm7G_associated_SNPs_16429 0 0 1 0 1 ENOPH1 chr4:83376007 5'GT 83376007 Upstream 19bp 15645 chr6 7404247 7404247 1 + G T ESCA 7404248 + 7404228 7404268 41 TCTTGTCATGAGTTTCATCGGTAAAGATGACATGTAAGTAC TCTTGTCATGAGTTTCATCTGTAAAGATGACATGTAAGTAC < 41bp 0.48210877138122 0.780749105539548 NA NA prediction 0.561498211079096 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404248 chr6:7404247 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_16431 0 0 0 0 2 RIOK1 chr6:7404174 3'AG 7404174 Downstream 74bp 15646 chr6 7404247 7404247 1 + G T ESCA 7404248 + 7404228 7404268 41 TCTTGTCATGAGTTTCATCGGTAAAGATGACATGTAAGTAC TCTTGTCATGAGTTTCATCTGTAAAGATGACATGTAAGTAC < 41bp 0.48210877138122 0.780749105539548 NA NA prediction 0.561498211079096 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7404248 chr6:7404247 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_16431 0 0 0 0 2 RIOK1 chr6:7404260 5'GT 7404260 Upstream 14bp 15647 chr20 37630419 37630419 1 + G T CESC 37630420 + 37630400 37630440 41 GAAACCAGTGATCCAGCAAGGGATACATGTGTGATCCTTAC GAAACCAGTGATCCAGCAATGGATACATGTGTGATCCTTAC < 41bp 0.565496432416954 0.846217549864868 NA NA prediction 0.561442234895827 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37630420 chr20:37630419 nonsynonymous SNV 0.896 2 20 hm7G_associated_SNPs_16434 0 0 1 0 2 DHX35 chr20:37630373 3'AG 37630373 Downstream 47bp 15648 chr20 37630419 37630419 1 + G T CESC 37630420 + 37630400 37630440 41 GAAACCAGTGATCCAGCAAGGGATACATGTGTGATCCTTAC GAAACCAGTGATCCAGCAATGGATACATGTGTGATCCTTAC < 41bp 0.565496432416954 0.846217549864868 NA NA prediction 0.561442234895827 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37630420 chr20:37630419 nonsynonymous SNV 0.896 2 20 hm7G_associated_SNPs_16434 0 0 1 0 2 DHX35 chr20:37630485 5'GT 37630485 Upstream 67bp 15649 chr19 1219335 1219335 1 + G T LUAD 1219336 + 1219316 1219356 41 GCCCCACGTATATGGTGATGGAGTACTGCGTGTGTGGCATG GCCCCACGTATATGGTGATTGAGTACTGCGTGTGTGGCATG < 41bp 0.568657391707378 0.849333284820688 NA NA prediction 0.561351786226621 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1219336 chr19:1219335 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16439 0 0 1 0 1 STK11 chr19:1219412 5'GT 1219412 Upstream 78bp 15650 chr9 100308559 100308559 1 + G T LIHC 100308560 + 100308540 100308580 41 AGGAGCTCTTGGATCACTTGGAAAAGCAAGCAAAGGAGTTT AGGAGCTCTTGGATCACTTTGAAAAGCAAGCAAAGGAGTTT < 41bp 0.571591056836031 0.852261939563811 NA NA prediction 0.561341765455561 Functional Gain - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100308560 chr9:100308559 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16440 0 0 1 0 2 TMOD1 chr9:100308467 3'AG 100308467 Downstream 93bp 15651 chr9 100308559 100308559 1 + G T LIHC 100308560 + 100308540 100308580 41 AGGAGCTCTTGGATCACTTGGAAAAGCAAGCAAAGGAGTTT AGGAGCTCTTGGATCACTTTGAAAAGCAAGCAAAGGAGTTT < 41bp 0.571591056836031 0.852261939563811 NA NA prediction 0.561341765455561 Functional Gain - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100308560 chr9:100308559 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16440 0 0 1 0 2 TMOD1 chr9:100308623 5'GT 100308623 Upstream 65bp 15652 chr10 95395331 95395331 1 + G T UCEC 95395332 + 95395312 95395352 41 ATAAGCTAGAAAACAGAAAGGACATTGCTCAGGAAATGCTC ATAAGCTAGAAAACAGAAATGACATTGCTCAGGAAATGCTC < 41bp 0.550560196119575 0.831223747312589 NA NA prediction 0.561327102386028 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95395332 chr10:95395331 nonsynonymous SNV 0.981 1 20 hm7G_associated_SNPs_16441 0 0 0 0 2 PDE6C chr10:95395254 3'AG 95395254 Downstream 78bp 15653 chr10 95395331 95395331 1 + G T UCEC 95395332 + 95395312 95395352 41 ATAAGCTAGAAAACAGAAAGGACATTGCTCAGGAAATGCTC ATAAGCTAGAAAACAGAAATGACATTGCTCAGGAAATGCTC < 41bp 0.550560196119575 0.831223747312589 NA NA prediction 0.561327102386028 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95395332 chr10:95395331 nonsynonymous SNV 0.981 1 20 hm7G_associated_SNPs_16441 0 0 0 0 2 PDE6C chr10:95395397 5'GT 95395397 Upstream 67bp 15654 chr7 30084784 30084784 1 + G T UCEC 30084785 + 30084765 30084805 41 TGCCTGGAAAGGTTGCAAAGGGAGCATACAAATGGCAGTCT TGCCTGGAAAGGTTGCAAATGGAGCATACAAATGGCAGTCT < 41bp 0.550074420717194 0.830737102341582 NA NA prediction 0.561325363248775 Functional Gain - PLEKHA8 ENSG00000106086 CDS Human protein_coding chr7:30084785 chr7:30084784 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16442 0 0 0 0 2 PLEKHA8 chr7:30084701 3'AG 30084701 Downstream 84bp 15655 chr7 30084784 30084784 1 + G T UCEC 30084785 + 30084765 30084805 41 TGCCTGGAAAGGTTGCAAAGGGAGCATACAAATGGCAGTCT TGCCTGGAAAGGTTGCAAATGGAGCATACAAATGGCAGTCT < 41bp 0.550074420717194 0.830737102341582 NA NA prediction 0.561325363248775 Functional Gain - PLEKHA8 ENSG00000106086 CDS Human protein_coding chr7:30084785 chr7:30084784 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16442 0 0 0 0 2 PLEKHA8 chr7:30084817 5'GT 30084817 Upstream 34bp 15656 chr8 104054571 104054571 1 + G T LUAD 104054572 + 104054552 104054592 41 TATATTTTCCTTTTAGGTTGGCACGTTGGATGTCTTGGTTG TATATTTTCCTTTTAGGTTTGCACGTTGGATGTCTTGGTTG < 41bp 0.544303403256421 0.824942322575248 NA NA prediction 0.561277838637654 Functional Gain - ATP6V1C1 ENSG00000155097 CDS Human protein_coding chr8:104054572 chr8:104054571 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_16444 0 0 1 0 1 ATP6V1C1 chr8:104054568 3'AG 104054568 Downstream 4bp 15657 chr1 186901903 186901903 1 + G T BRCA 186901904 + 186901884 186901924 41 CATCGTTTCAGGTGCCTGTGGTAGCCATATTGGGTTCAGGT CATCGTTTCAGGTGCCTGTTGTAGCCATATTGGGTTCAGGT < 41bp 0.476245712951357 0.780614088912523 NA NA prediction 0.561228177825047 Functional Gain - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186901904 chr1:186901903 synonymous SNV . 0 20 hm7G_associated_SNPs_16446 0 0 0 0 1 PLA2G4A chr1:186901895 3'AG 186901895 Downstream 9bp 15658 chr12 100797818 100797818 1 + G T HNSC 100797819 + 100797799 100797839 41 GTTTCTTTCCCTTCCAGGTGGGTCTCTTGTCAGCAGTCCCA GTTTCTTTCCCTTCCAGGTTGGTCTCTTGTCAGCAGTCCCA < 41bp 0.468850644702932 0.780590640460518 NA NA prediction 0.561181280921035 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100797819 chr12:100797818 synonymous SNV . 0 20 hm7G_associated_SNPs_16447 0 0 0 0 1 SLC17A8 chr12:100797816 3'AG 100797816 Downstream 3bp 15659 chr18 31226268 31226268 1 + G T LUAD 31226269 + 31226249 31226289 41 TAGTCTGTGAATCTGAATTGGATGGTACAGATATGGCCGAG TAGTCTGTGAATCTGAATTTGATGGTACAGATATGGCCGAG < 41bp 0.527355964144953 0.807946378294685 NA NA prediction 0.561180828299465 Functional Gain - ASXL3 ENSG00000141431 CDS Human protein_coding chr18:31226269 chr18:31226268 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_16448 0 0 1 0 2 ASXL3 chr18:31226209 3'AG 31226209 Downstream 60bp 15660 chr18 31226268 31226268 1 + G T LUAD 31226269 + 31226249 31226289 41 TAGTCTGTGAATCTGAATTGGATGGTACAGATATGGCCGAG TAGTCTGTGAATCTGAATTTGATGGTACAGATATGGCCGAG < 41bp 0.527355964144953 0.807946378294685 NA NA prediction 0.561180828299465 Functional Gain - ASXL3 ENSG00000141431 CDS Human protein_coding chr18:31226269 chr18:31226268 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_16448 0 0 1 0 2 ASXL3 chr18:31226317 5'GT 31226317 Upstream 50bp 15661 chr2 170863670 170863670 1 + G T UCEC 170863671 + 170863651 170863691 41 ATCTCATAAAGGAAGTGGAGGAGCTGCAGGGACGACCGGGA ATCTCATAAAGGAAGTGGATGAGCTGCAGGGACGACCGGGA < 41bp 0.549399190938106 0.829984073660285 NA NA prediction 0.561169765444359 Functional Gain - UBR3 ENSG00000144357 CDS Human protein_coding chr2:170863671 chr2:170863670 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_16449 0 0 1 0 1 UBR3 chr2:170863700 5'GT 170863700 Upstream 31bp 15662 chr6 43188225 43188225 1 + G T THCA 43188226 + 43188206 43188246 41 AATGAGTACCTGACAACTCGGATCGAGCAGAACCTTGTTTT AATGAGTACCTGACAACTCTGATCGAGCAGAACCTTGTTTT < 41bp 0.457482921760634 0.780575819665305 NA NA prediction 0.56115163933061 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188226 chr6:43188225 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_16451 0 0 0 0 1 CUL9 chr6:43188197 3'AG 43188197 Downstream 29bp 15663 chr3 50232026 50232026 1 + G T SARC 50232027 + 50232007 50232047 41 TGCTCTTCCTTAACAAGAAGGACGTCTTCTTCGAGAAGATC TGCTCTTCCTTAACAAGAATGACGTCTTCTTCGAGAAGATC < 41bp 0.454285259659637 0.780558671995394 NA NA prediction 0.561117343990788 Functional Gain - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50232027 chr3:50232026 nonsynonymous SNV 0.960 3 20 hm7G_associated_SNPs_16452 0 0 0 0 2 GNAT1 chr3:50231934 3'AG 50231934 Downstream 93bp 15664 chr3 50232026 50232026 1 + G T SARC 50232027 + 50232007 50232047 41 TGCTCTTCCTTAACAAGAAGGACGTCTTCTTCGAGAAGATC TGCTCTTCCTTAACAAGAATGACGTCTTCTTCGAGAAGATC < 41bp 0.454285259659637 0.780558671995394 NA NA prediction 0.561117343990788 Functional Gain - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50232027 chr3:50232026 nonsynonymous SNV 0.960 3 20 hm7G_associated_SNPs_16452 0 0 0 0 2 GNAT1 chr3:50232087 5'GT 50232087 Upstream 62bp 15665 chr1 28173591 28173591 1 + G T LIHC 28173592 + 28173572 28173612 41 ACATGGTGCAAACTGCAGTGGTCCCAGTCAAGGTAGGAAGC ACATGGTGCAAACTGCAGTTGTCCCAGTCAAGGTAGGAAGC < 41bp 0.564983317232397 0.845519774043058 NA NA prediction 0.561072913621322 Functional Gain - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28173592 chr1:28173591 synonymous SNV . 0 20 hm7G_associated_SNPs_16455 0 0 1 1 2 PPP1R8 chr1:28173539 3'AG 28173539 Downstream 53bp 15666 chr1 28173591 28173591 1 + G T LIHC 28173592 + 28173572 28173612 41 ACATGGTGCAAACTGCAGTGGTCCCAGTCAAGGTAGGAAGC ACATGGTGCAAACTGCAGTTGTCCCAGTCAAGGTAGGAAGC < 41bp 0.564983317232397 0.845519774043058 NA NA prediction 0.561072913621322 Functional Gain - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28173592 chr1:28173591 synonymous SNV . 0 20 hm7G_associated_SNPs_16455 0 0 1 1 2 PPP1R8 chr1:28173603 5'GT 28173603 Upstream 13bp 15667 chr14 24544482 24544482 1 + G T UCEC 24544483 + 24544463 24544503 41 GGACGGCAAACCCTGGGCAGGAGGTGCCACAAATACCCCAC GGACGGCAAACCCTGGGCATGAGGTGCCACAAATACCCCAC < 41bp 0.447335744302555 0.780502062381362 NA NA prediction 0.561004124762724 Functional Gain - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24544483 chr14:24544482 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16457 0 0 0 0 1 CPNE6 chr14:24544485 5'GT 24544485 Upstream 4bp 15668 chr17 7404887 7404887 1 + G T LIHC 7404888 + 7404868 7404908 41 TGAGCTGGAGCCCACCCCAGGGAACACTCTGCGGCAGACGT TGAGCTGGAGCCCACCCCATGGAACACTCTGCGGCAGACGT < 41bp 0.44372592577408 0.780495769368986 NA NA prediction 0.560991538737972 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7404888 chr17:7404887 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_16458 0 0 1 0 1 POLR2A chr17:7404845 3'AG 7404845 Downstream 43bp 15669 chr13 114541138 114541138 1 - C A ESCA 114541137 - 114541117 114541157 41 CGAATGCAGCCAGGAGAACGGGGGCTGCCTCCAGATCTGCC CGAATGCAGCCAGGAGAACTGGGGCTGCCTCCAGATCTGCC < 41bp 0.467726797007234 0.780494135907007 NA NA prediction 0.560988271814013 Functional Gain - GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541137 chr13:114541138 nonsynonymous SNV 0.287 4 20 hm7G_associated_SNPs_16459 0 0 0 0 2 GAS6 chr13:114541042 5'GT 114541042 Upstream 97bp 15670 chr13 114541138 114541138 1 - C A ESCA 114541137 - 114541117 114541157 41 CGAATGCAGCCAGGAGAACGGGGGCTGCCTCCAGATCTGCC CGAATGCAGCCAGGAGAACTGGGGCTGCCTCCAGATCTGCC < 41bp 0.467726797007234 0.780494135907007 NA NA prediction 0.560988271814013 Functional Gain - GAS6 ENSG00000183087 CDS Human protein_coding chr13:114541137 chr13:114541138 nonsynonymous SNV 0.287 4 20 hm7G_associated_SNPs_16459 0 0 0 0 2 GAS6 chr13:114541164 3'AG 114541164 Downstream 27bp 15671 chr2 95945716 95945716 1 + G T UCEC 95945717 + 95945697 95945737 41 CCAGCCACCCAGAAGCCAAGGGCGAGGCTGGAGCCCGCTTC CCAGCCACCCAGAAGCCAATGGCGAGGCTGGAGCCCGCTTC < 41bp 0.574761983310233 0.855229457069987 NA NA prediction 0.560934947519506 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95945717 chr2:95945716 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16461 0 0 0 0 1 PROM2 chr2:95945745 5'GT 95945745 Upstream 30bp 15672 chr4 56820470 56820470 1 + G T HNSC 56820471 + 56820451 56820491 41 CTCATAAACTCAAACTGTTGGAGAAAGAGAGCAAAGCTAAG CTCATAAACTCAAACTGTTTGAGAAAGAGAGCAAAGCTAAG < 41bp 0.525002479675768 0.805466617570605 NA NA prediction 0.560928275789674 Functional Gain - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56820471 chr4:56820470 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_16462 0 0 1 0 1 CEP135 chr4:56820549 5'GT 56820549 Upstream 80bp 15673 chr15 89020277 89020277 1 + G T STAD 89020278 + 89020258 89020298 41 GGTGAAAGGCCTGGGGCCAGGACGCTTGGTAAGTTACAGTG GGTGAAAGGCCTGGGGCCATGACGCTTGGTAAGTTACAGTG < 41bp 0.459576573658862 0.780457708347603 NA NA prediction 0.560915416695206 Functional Gain - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89020278 chr15:89020277 stopgain 0.995 1 20 hm7G_associated_SNPs_16463 0 0 1 0 2 MRPS11 chr15:89020220 3'AG 89020220 Downstream 58bp 15674 chr15 89020277 89020277 1 + G T STAD 89020278 + 89020258 89020298 41 GGTGAAAGGCCTGGGGCCAGGACGCTTGGTAAGTTACAGTG GGTGAAAGGCCTGGGGCCATGACGCTTGGTAAGTTACAGTG < 41bp 0.459576573658862 0.780457708347603 NA NA prediction 0.560915416695206 Functional Gain - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89020278 chr15:89020277 stopgain 0.995 1 20 hm7G_associated_SNPs_16463 0 0 1 0 2 MRPS11 chr15:89020285 5'GT 89020285 Upstream 9bp 15675 chr16 76311618 76311618 1 + G T LUSC 76311619 + 76311599 76311639 41 TCTGTATCTACTCAAAATTGGAACAGAGTCGAAGCTGGGAA TCTGTATCTACTCAAAATTTGAACAGAGTCGAAGCTGGGAA < 41bp 0.547512401071632 0.827966224062508 NA NA prediction 0.560907645981752 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76311619 chr16:76311618 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16464 0 0 0 0 1 CNTNAP4 chr16:76311644 5'GT 76311644 Upstream 27bp 15676 chr16 538969 538969 1 + G T LUAD 538970 + 538950 538990 41 CCTATGCAACGGGCAGCTGGGCTGCAGTGACCCCGCTTTCC CCTATGCAACGGGCAGCTGTGCTGCAGTGACCCCGCTTTCC < 41bp 0.583102338895823 0.863550184442351 NA NA prediction 0.560895691093056 Functional Gain - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:538970 chr16:538969 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_16465 0 0 1 0 1 RAB11FIP3 chr16:539000 5'GT 539000 Upstream 32bp 15677 chr7 150747659 150747659 1 + G T UCEC 150747660 + 150747640 150747680 41 TGGGCTTGGGGGTGTCCCCGGGCTACCAGACCTTTGTTTCT TGGGCTTGGGGGTGTCCCCTGGCTACCAGACCTTTGTTTCT < 41bp 0.443530006961179 0.78041901772156 NA NA prediction 0.560838035443119 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150747660 chr7:150747659 synonymous SNV . 0 20 hm7G_associated_SNPs_16467 0 0 0 0 2 ASIC3 chr7:150747568 3'AG 150747568 Downstream 92bp 15678 chr7 150747659 150747659 1 + G T UCEC 150747660 + 150747640 150747680 41 TGGGCTTGGGGGTGTCCCCGGGCTACCAGACCTTTGTTTCT TGGGCTTGGGGGTGTCCCCTGGCTACCAGACCTTTGTTTCT < 41bp 0.443530006961179 0.78041901772156 NA NA prediction 0.560838035443119 Functional Gain - ASIC3 ENSG00000213199 CDS Human protein_coding chr7:150747660 chr7:150747659 synonymous SNV . 0 20 hm7G_associated_SNPs_16467 0 0 0 0 2 ASIC3 chr7:150747695 5'GT 150747695 Upstream 37bp 15679 chrX 86877345 86877345 1 + G T LIHC 86877346 + 86877326 86877366 41 ATGCTCTAATGCAGTGGGTGGGGCATGATGTGCAGAATAGG ATGCTCTAATGCAGTGGGTTGGGCATGATGTGCAGAATAGG < 41bp 0.561756305425806 0.842162225568969 NA NA prediction 0.560811840286326 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86877346 chrX:86877345 synonymous SNV . 0 20 hm7G_associated_SNPs_16468 0 0 0 0 1 KLHL4 chrX:86877423 5'GT 86877423 Upstream 79bp 15680 chr17 73999374 73999374 1 + G T LAML 73999375 + 73999355 73999395 41 GCGAAGACACATGGCCCGGGGTCACCCAGCTGCCTGACTAT GCGAAGACACATGGCCCGGTGTCACCCAGCTGCCTGACTAT < 41bp 0.461851880884663 0.780404646496717 NA NA prediction 0.560809292993434 Functional Gain - CDK3 ENSG00000250506 CDS Human protein_coding chr17:73999375 chr17:73999374 synonymous SNV . 0 20 hm7G_associated_SNPs_16469 0 0 1 0 1 CDK3 chr17:73999276 3'AG 73999276 Downstream 99bp 15681 chr2 220499258 220499258 1 + G T LUSC 220499259 + 220499239 220499279 41 CTTCCTCTTCGTGATGCTGGGGCCCAGCCACACCAGCACTG CTTCCTCTTCGTGATGCTGTGGCCCAGCCACACCAGCACTG < 41bp 0.447696512424399 0.780391904540088 NA NA prediction 0.560783809080177 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220499259 chr2:220499258 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_16470 0 0 0 0 1 SLC4A3 chr2:220499326 5'GT 220499326 Upstream 69bp 15682 chr1 237001809 237001809 1 + G T LUSC 237001810 + 237001790 237001830 41 TCAATAGCATTAGTCTGAAGGAAGGAGAGGACGACTTCTTG TCAATAGCATTAGTCTGAATGAAGGAGAGGACGACTTCTTG < 41bp 0.465901546689899 0.780384128375398 NA NA prediction 0.560768256750796 Functional Gain - MTR ENSG00000116984 CDS Human protein_coding chr1:237001810 chr1:237001809 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_16471 0 0 1 0 2 MTR chr1:237001714 3'AG 237001714 Downstream 96bp 15683 chr1 237001809 237001809 1 + G T LUSC 237001810 + 237001790 237001830 41 TCAATAGCATTAGTCTGAAGGAAGGAGAGGACGACTTCTTG TCAATAGCATTAGTCTGAATGAAGGAGAGGACGACTTCTTG < 41bp 0.465901546689899 0.780384128375398 NA NA prediction 0.560768256750796 Functional Gain - MTR ENSG00000116984 CDS Human protein_coding chr1:237001810 chr1:237001809 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_16471 0 0 1 0 2 MTR chr1:237001899 5'GT 237001899 Upstream 91bp 15684 chr12 13065464 13065464 1 + G T UCEC 13065465 + 13065445 13065485 41 ACTATGAAGTAAAGAAAGAGGGCAGCTAACTCTGTCCTGAA ACTATGAAGTAAAGAAAGATGGCAGCTAACTCTGTCCTGAA < 41bp 0.535731047392977 0.816113304611616 NA NA prediction 0.560764514437279 Functional Gain - GPRC5A ENSG00000013588 CDS Human protein_coding chr12:13065465 chr12:13065464 nonsynonymous SNV 0.252 0 20 hm7G_associated_SNPs_16472 0 0 1 0 1 GPRC5A chr12:13065381 3'AG 13065381 Downstream 84bp 15685 chr16 56309975 56309975 1 + G T UCEC 56309976 + 56309956 56309996 41 GCATCGAATATGGTGATAAGGAGAGAAAGGTAGGCCCCTGA GCATCGAATATGGTGATAATGAGAGAAAGGTAGGCCCCTGA < 41bp 0.45817187480992 0.780375853001841 NA NA prediction 0.560751706003682 Functional Gain - GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56309976 chr16:56309975 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16473 0 0 0 0 1 GNAO1 chr16:56309984 5'GT 56309984 Upstream 10bp 15686 chr11 125448101 125448101 1 + G T LUAD 125448102 + 125448082 125448122 41 TCAATTTTCAGTGCTCTTTGGGTGCTCCCCTTGTTTGTGCT TCAATTTTCAGTGCTCTTTTGGTGCTCCCCTTGTTTGTGCT < 41bp 0.567760221382124 0.8481343632204 NA NA prediction 0.560748283676554 Functional Gain - EI24 ENSG00000149547 CDS Human protein_coding chr11:125448102 chr11:125448101 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_16474 0 0 1 0 2 EI24 chr11:125448029 3'AG 125448029 Downstream 73bp 15687 chr11 125448101 125448101 1 + G T LUAD 125448102 + 125448082 125448122 41 TCAATTTTCAGTGCTCTTTGGGTGCTCCCCTTGTTTGTGCT TCAATTTTCAGTGCTCTTTTGGTGCTCCCCTTGTTTGTGCT < 41bp 0.567760221382124 0.8481343632204 NA NA prediction 0.560748283676554 Functional Gain - EI24 ENSG00000149547 CDS Human protein_coding chr11:125448102 chr11:125448101 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_16474 0 0 1 0 2 EI24 chr11:125448153 5'GT 125448153 Upstream 53bp 15688 chr11 89891342 89891342 1 + G T LUAD 89891343 + 89891323 89891363 41 CAGACTTGATGTTGAAGAAGGAGTGGGAATCCCCCGAATAC CAGACTTGATGTTGAAGAATGAGTGGGAATCCCCCGAATAC < 41bp 0.48204268738463 0.780372250493677 NA NA prediction 0.560744500987354 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891343 chr11:89891342 stopgain 1.000 1 20 hm7G_associated_SNPs_16475 0 0 0 0 2 NAALAD2 chr11:89891313 3'AG 89891313 Downstream 30bp 15689 chr11 89891342 89891342 1 + G T LUAD 89891343 + 89891323 89891363 41 CAGACTTGATGTTGAAGAAGGAGTGGGAATCCCCCGAATAC CAGACTTGATGTTGAAGAATGAGTGGGAATCCCCCGAATAC < 41bp 0.48204268738463 0.780372250493677 NA NA prediction 0.560744500987354 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891343 chr11:89891342 stopgain 1.000 1 20 hm7G_associated_SNPs_16475 0 0 0 0 2 NAALAD2 chr11:89891406 5'GT 89891406 Upstream 65bp 15690 chr18 10468517 10468517 1 + G T UCEC 10468518 + 10468498 10468538 41 GACAGCAGGTCTCATCCTAGGTCCTTAGAGAAAAGTGCCTG GACAGCAGGTCTCATCCTATGTCCTTAGAGAAAAGTGCCTG < 41bp 0.457558944503627 0.780372213690642 NA NA prediction 0.560744427381285 Functional Gain - APCDD1 ENSG00000154856 CDS Human protein_coding chr18:10468518 chr18:10468517 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_16476 0 0 0 0 1 APCDD1 chr18:10468466 3'AG 10468466 Downstream 52bp 15691 chr5 149578850 149578850 1 + G T LUAD 149578851 + 149578831 149578871 41 AGCCCTGGGGAGATCCGCTGGAACCTCTGCCTCTGCCTGCT AGCCCTGGGGAGATCCGCTTGAACCTCTGCCTCTGCCTGCT < 41bp 0.442201547307587 0.780354402492234 NA NA prediction 0.560708804984468 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149578851 chr5:149578850 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16478 0 0 0 0 2 SLC6A7 chr5:149578791 3'AG 149578791 Downstream 60bp 15692 chr5 149578850 149578850 1 + G T LUAD 149578851 + 149578831 149578871 41 AGCCCTGGGGAGATCCGCTGGAACCTCTGCCTCTGCCTGCT AGCCCTGGGGAGATCCGCTTGAACCTCTGCCTCTGCCTGCT < 41bp 0.442201547307587 0.780354402492234 NA NA prediction 0.560708804984468 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149578851 chr5:149578850 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16478 0 0 0 0 2 SLC6A7 chr5:149578929 5'GT 149578929 Upstream 80bp 15693 chr3 167510405 167510405 1 + G T UCEC 167510406 + 167510386 167510426 41 AAAGATTTGGTATCCCCAAGGGATTTTGATGCTGCCACTTA AAAGATTTGGTATCCCCAATGGATTTTGATGCTGCCACTTA < 41bp 0.551889677752034 0.832230442990251 NA NA prediction 0.560681530476433 Functional Gain - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167510406 chr3:167510405 nonsynonymous SNV 0.524 2 20 hm7G_associated_SNPs_16480 0 0 0 0 1 SERPINI1 chr3:167510378 3'AG 167510378 Downstream 28bp 15694 chr3 37396654 37396654 1 + G T LUAD 37396655 + 37396635 37396675 41 ATCAGACTCAGAAAATTTTGGAAAGAGAAGATGCTCGGCTG ATCAGACTCAGAAAATTTTTGAAAGAGAAGATGCTCGGCTG < 41bp 0.541935016642844 0.822275701861439 NA NA prediction 0.560681370437188 Functional Gain - GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37396655 chr3:37396654 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16481 0 0 1 0 2 GOLGA4 chr3:37396592 3'AG 37396592 Downstream 63bp 15695 chr3 37396654 37396654 1 + G T LUAD 37396655 + 37396635 37396675 41 ATCAGACTCAGAAAATTTTGGAAAGAGAAGATGCTCGGCTG ATCAGACTCAGAAAATTTTTGAAAGAGAAGATGCTCGGCTG < 41bp 0.541935016642844 0.822275701861439 NA NA prediction 0.560681370437188 Functional Gain - GOLGA4 ENSG00000144674 CDS Human protein_coding chr3:37396655 chr3:37396654 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16481 0 0 1 0 2 GOLGA4 chr3:37396678 5'GT 37396678 Upstream 25bp 15696 chr12 121426701 121426701 1 + G T GBM 121426702 + 121426682 121426722 41 CAGCACAACATCCCACAGCGGGAGGTGGTCGATACCACTGG CAGCACAACATCCCACAGCTGGAGGTGGTCGATACCACTGG < 41bp 0.456260772429211 0.780317661681027 NA NA prediction 0.560635323362054 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121426702 chr12:121426701 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_16483 0 0 1 0 1 HNF1A chr12:121426636 3'AG 121426636 Downstream 66bp 15697 chr19 49843549 49843549 1 + G T SKCM 49843550 + 49843530 49843570 41 TATTCCTGTGCAGAAACCTGGACCACGTCTACAACCGGCTC TATTCCTGTGCAGAAACCTTGACCACGTCTACAACCGGCTC < 41bp 0.462255870991246 0.780308207910539 NA NA prediction 0.560616415821078 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49843550 chr19:49843549 synonymous SNV . 0 20 hm7G_associated_SNPs_16485 0 0 0 0 1 CD37 chr19:49843508 3'AG 49843508 Downstream 42bp 15698 chr11 59861472 59861472 1 + G T LIHC 59861473 + 59861453 59861493 41 TGCTGTTTCTCACCATTCTGGGACTTGGTAGTGCTGTGTCA TGCTGTTTCTCACCATTCTTGGACTTGGTAGTGCTGTGTCA < 41bp 0.558771233400725 0.839072990115986 NA NA prediction 0.560603513430523 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59861473 chr11:59861472 synonymous SNV . 0 20 hm7G_associated_SNPs_16487 0 0 0 0 2 MS4A2 chr11:59861437 3'AG 59861437 Downstream 36bp 15699 chr11 59861472 59861472 1 + G T LIHC 59861473 + 59861453 59861493 41 TGCTGTTTCTCACCATTCTGGGACTTGGTAGTGCTGTGTCA TGCTGTTTCTCACCATTCTTGGACTTGGTAGTGCTGTGTCA < 41bp 0.558771233400725 0.839072990115986 NA NA prediction 0.560603513430523 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59861473 chr11:59861472 synonymous SNV . 0 20 hm7G_associated_SNPs_16487 0 0 0 0 2 MS4A2 chr11:59861535 5'GT 59861535 Upstream 64bp 15700 chr4 159568269 159568269 1 + G T LUSC 159568270 + 159568250 159568290 41 ATTTTTCAAAAACTACTATGGCACCAATGGAGTATGCTTCC ATTTTTCAAAAACTACTATTGCACCAATGGAGTATGCTTCC < 41bp 0.485394037652799 0.780292708795412 NA NA prediction 0.560585417590824 Functional Gain - RXFP1 ENSG00000171509 CDS Human protein_coding chr4:159568270 chr4:159568269 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16488 0 0 0 0 1 RXFP1 chr4:159568353 5'GT 159568353 Upstream 85bp 15701 chr19 22836759 22836759 1 + G T STAD 22836760 + 22836740 22836780 41 CAGACCTGATCACCTGTCTGGAGCAAGGAAAAGAACCTTGG CAGACCTGATCACCTGTCTTGAGCAAGGAAAAGAACCTTGG < 41bp 0.539463518321678 0.819748809556048 NA NA prediction 0.560570582468741 Functional Gain - ZNF492 ENSG00000229676 CDS Human protein_coding chr19:22836760 chr19:22836759 synonymous SNV . 0 20 hm7G_associated_SNPs_16489 0 0 0 0 2 ZNF492 chr19:22836722 3'AG 22836722 Downstream 38bp 15702 chr19 22836759 22836759 1 + G T STAD 22836760 + 22836740 22836780 41 CAGACCTGATCACCTGTCTGGAGCAAGGAAAAGAACCTTGG CAGACCTGATCACCTGTCTTGAGCAAGGAAAAGAACCTTGG < 41bp 0.539463518321678 0.819748809556048 NA NA prediction 0.560570582468741 Functional Gain - ZNF492 ENSG00000229676 CDS Human protein_coding chr19:22836760 chr19:22836759 synonymous SNV . 0 20 hm7G_associated_SNPs_16489 0 0 0 0 2 ZNF492 chr19:22836817 5'GT 22836817 Upstream 59bp 15703 chrX 128710001 128710001 1 + G T STAD 128710002 + 128709982 128710022 41 AGCCAGTACTGCAAGCCATGGCTTCGGGCTGAACCTTTTGA AGCCAGTACTGCAAGCCATTGCTTCGGGCTGAACCTTTTGA < 41bp 0.45652520352838 0.780279414945174 NA NA prediction 0.560558829890347 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128710002 chrX:128710001 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_16491 0 0 1 0 1 OCRL chrX:128710039 5'GT 128710039 Upstream 39bp 15704 chr12 101876581 101876581 1 + G T LUAD 101876582 + 101876562 101876602 41 TTATATAGAACAGTGCTGCGGACTTCTATTTTGAAGGAAAT TTATATAGAACAGTGCTGCTGACTTCTATTTTGAAGGAAAT < 41bp 0.509952041545767 0.790197559334565 NA NA prediction 0.560491035577595 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101876582 chr12:101876581 synonymous SNV . 0 20 hm7G_associated_SNPs_16495 0 0 0 0 2 SPIC chr12:101876570 3'AG 101876570 Downstream 12bp 15705 chr12 101876581 101876581 1 + G T LUAD 101876582 + 101876562 101876602 41 TTATATAGAACAGTGCTGCGGACTTCTATTTTGAAGGAAAT TTATATAGAACAGTGCTGCTGACTTCTATTTTGAAGGAAAT < 41bp 0.509952041545767 0.790197559334565 NA NA prediction 0.560491035577595 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101876582 chr12:101876581 synonymous SNV . 0 20 hm7G_associated_SNPs_16495 0 0 0 0 2 SPIC chr12:101876678 5'GT 101876678 Upstream 98bp 15706 chr7 128845541 128845541 1 + G T BLCA 128845542 + 128845522 128845562 41 CTTCTTTGTGGGCAGCATTGGCTGGCTGGCCCAGTTCATGG CTTCTTTGTGGGCAGCATTTGCTGGCTGGCCCAGTTCATGG < 41bp 0.577894621361706 0.858139512357355 NA NA prediction 0.560489781991298 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128845542 chr7:128845541 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_16496 0 0 0 0 2 SMO chr7:128845451 3'AG 128845451 Downstream 91bp 15707 chr7 128845541 128845541 1 + G T BLCA 128845542 + 128845522 128845562 41 CTTCTTTGTGGGCAGCATTGGCTGGCTGGCCCAGTTCATGG CTTCTTTGTGGGCAGCATTTGCTGGCTGGCCCAGTTCATGG < 41bp 0.577894621361706 0.858139512357355 NA NA prediction 0.560489781991298 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128845542 chr7:128845541 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_16496 0 0 0 0 2 SMO chr7:128845623 5'GT 128845623 Upstream 83bp 15708 chr22 32462970 32462970 1 + G T LUSC 32462971 + 32462951 32462991 41 TGGAAGTGGCCACTTTGTGGGGCTGGCCGGGACTGGGGCAG TGGAAGTGGCCACTTTGTGTGGCTGGCCGGGACTGGGGCAG < 41bp 0.580730518998901 0.860940775657031 NA NA prediction 0.56042051331626 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32462971 chr22:32462970 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_16500 0 0 0 0 2 SLC5A1 chr22:32462922 3'AG 32462922 Downstream 49bp 15709 chr22 32462970 32462970 1 + G T LUSC 32462971 + 32462951 32462991 41 TGGAAGTGGCCACTTTGTGGGGCTGGCCGGGACTGGGGCAG TGGAAGTGGCCACTTTGTGTGGCTGGCCGGGACTGGGGCAG < 41bp 0.580730518998901 0.860940775657031 NA NA prediction 0.56042051331626 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32462971 chr22:32462970 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_16500 0 0 0 0 2 SLC5A1 chr22:32463026 5'GT 32463026 Upstream 57bp 15710 chr20 2411213 2411213 1 + G T HNSC 2411214 + 2411194 2411234 41 AGAAGCTTCTGGTGGAGAAGGACATTACTCTAGAGGACTTC AGAAGCTTCTGGTGGAGAATGACATTACTCTAGAGGACTTC < 41bp 0.455603598982514 0.780206527402477 NA NA prediction 0.560413054804955 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2411214 chr20:2411213 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16501 0 0 0 0 1 TGM6 chr20:2411246 5'GT 2411246 Upstream 34bp 15711 chr9 35679195 35679195 1 + G T UCEC 35679196 + 35679176 35679216 41 TCACAGGCTCAGAGACTCAGGTCCCAGGACTGGACATATCT TCACAGGCTCAGAGACTCATGTCCCAGGACTGGACATATCT < 41bp 0.460289879241872 0.780203482327497 NA NA prediction 0.560406964654993 Functional Gain - CA9 ENSG00000107159 CDS Human protein_coding chr9:35679196 chr9:35679195 nonsynonymous SNV 0.738 0 20 hm7G_associated_SNPs_16502 0 0 1 0 1 CA9 chr9:35679182 3'AG 35679182 Downstream 14bp 15712 chr5 148617052 148617052 1 + G T GBM 148617053 + 148617033 148617073 41 TTAATTACAAAGACCTGGCGGCTCTCCCCAAGGTTAAGTCT TTAATTACAAAGACCTGGCTGCTCTCCCCAAGGTTAAGTCT < 41bp 0.452778735685835 0.780199438391499 NA NA prediction 0.560398876782998 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148617053 chr5:148617052 synonymous SNV . 0 20 hm7G_associated_SNPs_16504 0 0 0 0 1 ABLIM3 chr5:148617011 3'AG 148617011 Downstream 42bp 15713 chr1 47608949 47608949 1 + G T rs571262150 47608950 + 47608930 47608970 41 TCCCACCACAGGACAAATGGGAAGAGCTCCTTGGCCAGGAT TCCCACCACAGGACAAATGTGAAGAGCTCCTTGGCCAGGAT < 41bp 0.556195737569159 0.836372275062701 NA NA prediction 0.560353074987084 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47608950 chr1:47608949 nonsynonymous SNV 0.359 4 20 hm7G_associated_SNPs_16507 0 0 0 0 1 CYP4A22 chr1:47608941 3'AG 47608941 Downstream 9bp 15714 chr2 74718774 74718774 1 + G T UCEC 74718775 + 74718755 74718795 41 AGCCCTCCAAGAGAGGAGAGGCCCCAGCAGAGTCCAAAGGT AGCCCTCCAAGAGAGGAGATGCCCCAGCAGAGTCCAAAGGT < 41bp 0.571344874761633 0.85150261640892 NA NA prediction 0.560315483294574 Functional Gain - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74718775 chr2:74718774 nonsynonymous SNV 0.042 0 20 hm7G_associated_SNPs_16511 0 0 1 0 2 TTC31 chr2:74718793 5'GT 74718793 Upstream 20bp 15715 chr2 74718774 74718774 1 + G T UCEC 74718775 + 74718755 74718795 41 AGCCCTCCAAGAGAGGAGAGGCCCCAGCAGAGTCCAAAGGT AGCCCTCCAAGAGAGGAGATGCCCCAGCAGAGTCCAAAGGT < 41bp 0.571344874761633 0.85150261640892 NA NA prediction 0.560315483294574 Functional Gain - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74718775 chr2:74718774 nonsynonymous SNV 0.042 0 20 hm7G_associated_SNPs_16511 0 0 1 0 2 TTC31 chr2:74718799 5'GT 74718799 Upstream 26bp 15716 chr1 213062584 213062584 1 + G T UCEC 213062585 + 213062565 213062605 41 CTGTGTCTGGATGTTTATAGGCATCATATTAACAGGTAAAT CTGTGTCTGGATGTTTATATGCATCATATTAACAGGTAAAT < 41bp 0.471561822335539 0.780157514023135 NA NA prediction 0.56031502804627 Functional Gain - FLVCR1 ENSG00000162769 CDS Human protein_coding chr1:213062585 chr1:213062584 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16512 0 0 1 0 2 FLVCR1 chr1:213062488 3'AG 213062488 Downstream 97bp 15717 chr1 213062584 213062584 1 + G T UCEC 213062585 + 213062565 213062605 41 CTGTGTCTGGATGTTTATAGGCATCATATTAACAGGTAAAT CTGTGTCTGGATGTTTATATGCATCATATTAACAGGTAAAT < 41bp 0.471561822335539 0.780157514023135 NA NA prediction 0.56031502804627 Functional Gain - FLVCR1 ENSG00000162769 CDS Human protein_coding chr1:213062585 chr1:213062584 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16512 0 0 1 0 2 FLVCR1 chr1:213062599 5'GT 213062599 Upstream 16bp 15718 chr10 93596719 93596719 1 + G T LUAD 93596720 + 93596700 93596740 41 AGGCAGACAGACAATTGCTGGAAGCTGCAAAGGCTGGAGAT AGGCAGACAGACAATTGCTTGAAGCTGCAAAGGCTGGAGAT < 41bp 0.559758010385497 0.839909735570329 NA NA prediction 0.560303450369663 Functional Gain - TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93596720 chr10:93596719 synonymous SNV . 0 20 hm7G_associated_SNPs_16514 0 0 1 0 2 TNKS2 chr10:93596676 3'AG 93596676 Downstream 44bp 15719 chr10 93596719 93596719 1 + G T LUAD 93596720 + 93596700 93596740 41 AGGCAGACAGACAATTGCTGGAAGCTGCAAAGGCTGGAGAT AGGCAGACAGACAATTGCTTGAAGCTGCAAAGGCTGGAGAT < 41bp 0.559758010385497 0.839909735570329 NA NA prediction 0.560303450369663 Functional Gain - TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93596720 chr10:93596719 synonymous SNV . 0 20 hm7G_associated_SNPs_16514 0 0 1 0 2 TNKS2 chr10:93596755 5'GT 93596755 Upstream 37bp 15720 chr1 247582126 247582126 1 + G T LUSC 247582127 + 247582107 247582147 41 CAAGCACCCGCTGCAAGCTGGCCAGGTACCTGGAGGACCTG CAAGCACCCGCTGCAAGCTTGCCAGGTACCTGGAGGACCTG < 41bp 0.460845186395945 0.780144289277374 NA NA prediction 0.560288578554748 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247582127 chr1:247582126 synonymous SNV . 0 20 hm7G_associated_SNPs_16515 0 0 0 0 1 NLRP3 chr1:247582059 3'AG 247582059 Downstream 68bp 15721 chr20 43703676 43703676 1 + G T LUSC 43703677 + 43703657 43703697 41 AGCTTAAGAGTTGGACAGTGGAGGACCTTCAGAAGAGGCTC AGCTTAAGAGTTGGACAGTTGAGGACCTTCAGAAGAGGCTC < 41bp 0.473125418603624 0.780125282129025 NA NA prediction 0.560250564258049 Functional Gain - STK4 ENSG00000101109 CDS Human protein_coding chr20:43703677 chr20:43703676 synonymous SNV . 0 20 hm7G_associated_SNPs_16516 0 0 1 0 1 STK4 chr20:43703659 3'AG 43703659 Downstream 18bp 15722 chr12 6952669 6952669 1 + G T LAML 6952670 + 6952650 6952690 41 GGCAATGTCAAGGTCAGCCGGGAGCTTTCTGCTCACACAGG GGCAATGTCAAGGTCAGCCTGGAGCTTTCTGCTCACACAGG < 41bp 0.576868024298227 0.856990927053255 NA NA prediction 0.560245805510055 Functional Gain - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6952670 chr12:6952669 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16517 0 0 0 0 1 GNB3 chr12:6952689 5'GT 6952689 Upstream 21bp 15723 chr3 118913203 118913203 1 + G T LUAD 118913204 + 118913184 118913224 41 TTAAAGAACCTCTCAACCTGGAGGCTTGTAAACTAGGCGTG TTAAAGAACCTCTCAACCTTGAGGCTTGTAAACTAGGCGTG < 41bp 0.553353275889372 0.833475299308993 NA NA prediction 0.560244046839242 Functional Gain - UPK1B ENSG00000114638 CDS Human protein_coding chr3:118913204 chr3:118913203 synonymous SNV . 0 20 hm7G_associated_SNPs_16518 0 0 0 0 1 UPK1B chr3:118913245 5'GT 118913245 Upstream 43bp 15724 chr3 52824864 52824864 1 + G T STAD 52824865 + 52824845 52824885 41 GAGTGTGGAAGGGGAGCTCGGTCCACCAGGACTTCCTGGGC GAGTGTGGAAGGGGAGCTCTGTCCACCAGGACTTCCTGGGC < 41bp 0.458890077580524 0.780099272755028 NA NA prediction 0.560198545510055 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52824865 chr3:52824864 synonymous SNV . 0 20 hm7G_associated_SNPs_16522 0 0 1 0 1 ITIH1 chr3:52824937 5'GT 52824937 Upstream 74bp 15725 chr15 91437015 91437015 1 + G T PRAD 91437016 + 91436996 91437036 41 AGACAAGTCCCCGTGAAGTGGACCGCACCTGAGGCCCTTAA AGACAAGTCCCCGTGAAGTTGACCGCACCTGAGGCCCTTAA < 41bp 0.450981975719181 0.780089524639717 NA NA prediction 0.560179049279434 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91437016 chr15:91437015 nonsynonymous SNV 0.650 4 20 hm7G_associated_SNPs_16523 0 0 0 0 1 FES chr15:91437041 5'GT 91437041 Upstream 27bp 15726 chr22 21330812 21330812 1 + G T LUAD 21330813 + 21330793 21330833 41 CCGCAACGTGGTCGTCGTGGGAGCCGGCTTCCTGGGTGAGA CCGCAACGTGGTCGTCGTGTGAGCCGGCTTCCTGGGTGAGA < 41bp 0.563810685709821 0.843878972342278 NA NA prediction 0.560136573264914 Functional Gain - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21330813 chr22:21330812 stopgain 0.672 1 20 hm7G_associated_SNPs_16528 0 0 1 0 1 AIFM3 chr22:21330827 5'GT 21330827 Upstream 16bp 15727 chr22 25017021 25017021 1 + G T UCEC 25017022 + 25017002 25017042 41 TCACGGCCCAGATTGTGAAGGACATCCAGGCGGCCGGTGAG TCACGGCCCAGATTGTGAATGACATCCAGGCGGCCGGTGAG < 41bp 0.451466862944995 0.780054565176017 NA NA prediction 0.560109130352034 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25017022 chr22:25017021 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_16530 0 0 1 0 1 GGT1 chr22:25017037 5'GT 25017037 Upstream 17bp 15728 chr20 29628235 29628235 1 + G T UCEC 29628236 + 29628216 29628256 41 GTTTCACTTAGGGGAAAATGGCTTTGTTGGCCTCAAATAGC GTTTCACTTAGGGGAAAATTGCTTTGTTGGCCTCAAATAGC < 41bp 0.560233139150305 0.840281843576123 NA NA prediction 0.560097408851637 Functional Gain - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628236 chr20:29628235 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_16531 0 0 0 0 2 FRG1BP;FRG1DP chr20:29628227 3'AG 29628227 Downstream 9bp 15729 chr20 29628235 29628235 1 + G T UCEC 29628236 + 29628216 29628256 41 GTTTCACTTAGGGGAAAATGGCTTTGTTGGCCTCAAATAGC GTTTCACTTAGGGGAAAATTGCTTTGTTGGCCTCAAATAGC < 41bp 0.560233139150305 0.840281843576123 NA NA prediction 0.560097408851637 Functional Gain - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628236 chr20:29628235 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_16531 0 0 0 0 2 FRG1BP;FRG1DP chr20:29628331 5'GT 29628331 Upstream 97bp 15730 chr1 244538728 244538728 1 + G T LUAD 244538729 + 244538709 244538749 41 GCTATTACCCTGGGCAGCTGGCAAGACTCCATTTTGATCAT GCTATTACCCTGGGCAGCTTGCAAGACTCCATTTTGATCAT < 41bp 0.566962755529267 0.84700916809959 NA NA prediction 0.560092825140646 Functional Gain - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244538729 chr1:244538728 synonymous SNV . 0 20 hm7G_associated_SNPs_16532 0 0 1 0 2 C1orf100 chr1:244538674 3'AG 244538674 Downstream 55bp 15731 chr1 244538728 244538728 1 + G T LUAD 244538729 + 244538709 244538749 41 GCTATTACCCTGGGCAGCTGGCAAGACTCCATTTTGATCAT GCTATTACCCTGGGCAGCTTGCAAGACTCCATTTTGATCAT < 41bp 0.566962755529267 0.84700916809959 NA NA prediction 0.560092825140646 Functional Gain - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244538729 chr1:244538728 synonymous SNV . 0 20 hm7G_associated_SNPs_16532 0 0 1 0 2 C1orf100 chr1:244538769 5'GT 244538769 Upstream 42bp 15732 chr17 25631920 25631920 1 + G T LUSC 25631921 + 25631901 25631941 41 GACAAAACTCTCAGAGTATGGGACCTGAAAGATGATGGTAT GACAAAACTCTCAGAGTATTGGACCTGAAAGATGATGGTAT < 41bp 0.520587784742011 0.8006268567057 NA NA prediction 0.560078143927378 Functional Gain - WSB1 ENSG00000109046 CDS Human protein_coding chr17:25631921 chr17:25631920 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_16533 0 0 1 0 1 WSB1 chr17:25631937 5'GT 25631937 Upstream 18bp 15733 chr16 20471598 20471598 1 + G T LUAD 20471599 + 20471579 20471619 41 GTGATGTGTTGGATCACTGGGCTGACATGGAGAAGGTAATG GTGATGTGTTGGATCACTGTGCTGACATGGAGAAGGTAATG < 41bp 0.56095267849846 0.840983347664096 NA NA prediction 0.560061338331271 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20471599 chr16:20471598 nonsynonymous SNV 0.891 4 20 hm7G_associated_SNPs_16535 0 0 0 1 1 ACSM2A chr16:20471613 5'GT 20471613 Upstream 16bp 15734 chrX 69668812 69668812 1 + G T UCEC 69668813 + 69668793 69668833 41 GAGGAAATCGTACTTGAGAGGGTGAGTCTGCCAGTGGGGAA GAGGAAATCGTACTTGAGATGGTGAGTCTGCCAGTGGGGAA < 41bp 0.572370782181231 0.852384850561288 NA NA prediction 0.560028136760114 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69668813 chrX:69668812 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_16537 0 0 0 0 1 DLG3 chrX:69668763 3'AG 69668763 Downstream 50bp 15735 chr2 101604597 101604597 1 + G T CESC 101604598 + 101604578 101604618 41 GCAGCACCCAGCGACCTGAGGCTCAGCAGCAGCTACAGCAA GCAGCACCCAGCGACCTGATGCTCAGCAGCAGCTACAGCAA < 41bp 0.576349832913251 0.856363317882359 NA NA prediction 0.560026969938215 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101604598 chr2:101604597 nonsynonymous SNV 0.088 0 20 hm7G_associated_SNPs_16538 0 0 1 0 1 NPAS2 chr2:101604541 3'AG 101604541 Downstream 57bp 15736 chr9 75775212 75775212 1 + G T GBM 75775213 + 75775193 75775233 41 ACTGAAGAAAGCCCTTACAGGTCACCTTGAGGAGGTTGTTT ACTGAAGAAAGCCCTTACATGTCACCTTGAGGAGGTTGTTT < 41bp 0.554968361244945 0.834978349312181 NA NA prediction 0.560019976134472 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75775213 chr9:75775212 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_16539 0 0 1 0 2 ANXA1 chr9:75775179 3'AG 75775179 Downstream 34bp 15737 chr9 75775212 75775212 1 + G T GBM 75775213 + 75775193 75775233 41 ACTGAAGAAAGCCCTTACAGGTCACCTTGAGGAGGTTGTTT ACTGAAGAAAGCCCTTACATGTCACCTTGAGGAGGTTGTTT < 41bp 0.554968361244945 0.834978349312181 NA NA prediction 0.560019976134472 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75775213 chr9:75775212 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_16539 0 0 1 0 2 ANXA1 chr9:75775292 5'GT 75775292 Upstream 81bp 15738 chr4 995626 995626 1 + G T SARC 995627 + 995607 995647 41 GGTACCAACTTCTTCACTGGGGAGGCGGGCGTGCGGCTGGA GGTACCAACTTCTTCACTGTGGAGGCGGGCGTGCGGCTGGA < 41bp 0.456724985750339 0.77999992929907 NA NA prediction 0.559999858598139 Functional Gain - IDUA ENSG00000127415 CDS Human protein_coding chr4:995627 chr4:995626 nonsynonymous SNV 0.193 5 20 hm7G_associated_SNPs_16540 0 0 1 0 1 IDUA chr4:995669 5'GT 995669 Upstream 44bp 15739 chr2 27353460 27353460 1 + G T UCEC 27353461 + 27353441 27353481 41 GCTGCTCATCACAGCCCGGGGTGGCCACATCGGCTTCCTGG GCTGCTCATCACAGCCCGGTGTGGCCACATCGGCTTCCTGG < 41bp 0.46848519749013 0.779973913438902 NA NA prediction 0.559947826877804 Functional Gain - ABHD1 ENSG00000143994 CDS Human protein_coding chr2:27353461 chr2:27353460 nonsynonymous SNV 0.183 4 20 hm7G_associated_SNPs_16542 0 0 1 0 1 ABHD1 chr2:27353401 3'AG 27353401 Downstream 60bp 15740 chr19 1969934 1969934 1 + G T STAD 1969935 + 1969915 1969955 41 CGGCAAGAAGATCGGCTGCGGCAACTTCGGGGAGCTCCGCC CGGCAAGAAGATCGGCTGCTGCAACTTCGGGGAGCTCCGCC < 41bp 0.544908710639952 0.824880406346683 NA NA prediction 0.559943391413462 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1969935 chr19:1969934 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_16543 0 0 1 0 1 CSNK1G2 chr19:1969958 5'GT 1969958 Upstream 25bp 15741 chr20 6758971 6758971 1 + G T UCEC 6758972 + 6758952 6758992 41 TAAGTTCTATCCCCACGGAGGAGTTTATCACCTCAGCAGAG TAAGTTCTATCCCCACGGATGAGTTTATCACCTCAGCAGAG < 41bp 0.483477096081026 0.779959745274183 NA NA prediction 0.559919490548366 Functional Gain - BMP2 ENSG00000125845 CDS Human protein_coding chr20:6758972 chr20:6758971 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_16544 0 0 0 0 1 BMP2 chr20:6758892 3'AG 6758892 Downstream 80bp 15742 chr2 207634910 207634910 1 + G T SARC 207634911 + 207634891 207634931 41 ATGTTCATGTTCTACGAACGGGATTCAGGTGAGAACTCTCT ATGTTCATGTTCTACGAACTGGATTCAGGTGAGAACTCTCT < 41bp 0.548885614487053 0.8288224302963 NA NA prediction 0.559873631618494 Functional Gain - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207634911 chr2:207634910 synonymous SNV . 0 20 hm7G_associated_SNPs_16546 0 0 1 0 2 FASTKD2 chr2:207634815 3'AG 207634815 Downstream 96bp 15743 chr2 207634910 207634910 1 + G T SARC 207634911 + 207634891 207634931 41 ATGTTCATGTTCTACGAACGGGATTCAGGTGAGAACTCTCT ATGTTCATGTTCTACGAACTGGATTCAGGTGAGAACTCTCT < 41bp 0.548885614487053 0.8288224302963 NA NA prediction 0.559873631618494 Functional Gain - FASTKD2 ENSG00000118246 CDS Human protein_coding chr2:207634911 chr2:207634910 synonymous SNV . 0 20 hm7G_associated_SNPs_16546 0 0 1 0 2 FASTKD2 chr2:207634918 5'GT 207634918 Upstream 9bp 15744 chr20 42168872 42168872 1 + G T LUSC 42168873 + 42168853 42168893 41 CGCTCACTCTCAGTGTGCTGGGAGCAGCACTGCAAGCTCCT CGCTCACTCTCAGTGTGCTTGGAGCAGCACTGCAAGCTCCT < 41bp 0.581257533795304 0.861187101163342 NA NA prediction 0.559859134736076 Functional Gain - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42168873 chr20:42168872 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16547 0 0 1 0 1 L3MBTL1 chr20:42168948 5'GT 42168948 Upstream 77bp 15745 chr18 8786057 8786057 1 + G T UCEC 8786058 + 8786038 8786078 41 CGGGGACACCGGGAGCCACGGGCTGGGAGGCCAGACCTGCT CGGGGACACCGGGAGCCACTGGCTGGGAGGCCAGACCTGCT < 41bp 0.58190540409002 0.861834881023603 NA NA prediction 0.559858953867164 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8786058 chr18:8786057 nonsynonymous SNV 0.067 2 20 hm7G_associated_SNPs_16548 0 0 1 0 1 MTCL1 chr18:8786089 5'GT 8786089 Upstream 33bp 15746 chr2 233537084 233537084 1 + G T LUSC 233537085 + 233537065 233537105 41 ACAGTGGGCTGATGGCGCTGGCAAAGCTTTCTGAGATCGAT ACAGTGGGCTGATGGCGCTTGCAAAGCTTTCTGAGATCGAT < 41bp 0.581901551604142 0.861812699742454 NA NA prediction 0.559822296276624 Functional Gain - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233537085 chr2:233537084 synonymous SNV . 0 20 hm7G_associated_SNPs_16550 0 0 0 0 2 EFHD1 chr2:233537019 3'AG 233537019 Downstream 66bp 15747 chr2 233537084 233537084 1 + G T LUSC 233537085 + 233537065 233537105 41 ACAGTGGGCTGATGGCGCTGGCAAAGCTTTCTGAGATCGAT ACAGTGGGCTGATGGCGCTTGCAAAGCTTTCTGAGATCGAT < 41bp 0.581901551604142 0.861812699742454 NA NA prediction 0.559822296276624 Functional Gain - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233537085 chr2:233537084 synonymous SNV . 0 20 hm7G_associated_SNPs_16550 0 0 0 0 2 EFHD1 chr2:233537153 5'GT 233537153 Upstream 70bp 15748 chr3 134911466 134911466 1 + G T UCEC 134911467 + 134911447 134911487 41 TTGAAACTGCCAGGCAAGAGGGAAATCTACGTGGCCATCAA TTGAAACTGCCAGGCAAGATGGAAATCTACGTGGCCATCAA < 41bp 0.456398481770663 0.779905272945384 NA NA prediction 0.559810545890769 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134911467 chr3:134911466 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16551 0 0 0 0 1 EPHB1 chr3:134911418 3'AG 134911418 Downstream 49bp 15749 chr7 769379 769379 1 + G T UCEC 769380 + 769360 769400 41 AGCACTGGAAGGTCCGTGTGGCCGCCATTGAAGCCACAGGC AGCACTGGAAGGTCCGTGTTGCCGCCATTGAAGCCACAGGC < 41bp 0.435243575470751 0.779880345586472 NA NA prediction 0.559760691172944 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:769380 chr7:769379 synonymous SNV . 0 20 hm7G_associated_SNPs_16554 0 0 1 0 2 DNAAF5 chr7:769300 3'AG 769300 Downstream 80bp 15750 chr7 769379 769379 1 + G T UCEC 769380 + 769360 769400 41 AGCACTGGAAGGTCCGTGTGGCCGCCATTGAAGCCACAGGC AGCACTGGAAGGTCCGTGTTGCCGCCATTGAAGCCACAGGC < 41bp 0.435243575470751 0.779880345586472 NA NA prediction 0.559760691172944 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:769380 chr7:769379 synonymous SNV . 0 20 hm7G_associated_SNPs_16554 0 0 1 0 2 DNAAF5 chr7:769362 3'AG 769362 Downstream 18bp 15751 chr7 76027073 76027073 1 - C A COAD 76027072 - 76027052 76027092 41 TCCTGCACAGTGGCCTGTGGGGCACCGTGTGTGACGACGAC TCCTGCACAGTGGCCTGTGTGGCACCGTGTGTGACGACGAC < 41bp 0.57991992881568 0.859780908070096 NA NA prediction 0.559721958508832 Functional Gain - SSC4D ENSG00000146700 CDS Human protein_coding chr7:76027072 chr7:76027073 nonsynonymous SNV 0.968 3 20 hm7G_associated_SNPs_16555 0 0 1 0 1 SSC4D chr7:76027149 3'AG 76027149 Downstream 77bp 15752 chr1 186348920 186348920 1 + G T SKCM 186348921 + 186348901 186348941 41 GATTTTAGTTCCTAAAAATGGGAAGAACCTACATTGTAGAA GATTTTAGTTCCTAAAAATTGGAAGAACCTACATTGTAGAA < 41bp 0.534667501099122 0.814514885329397 NA NA prediction 0.559694768460551 Functional Gain - C1orf27 ENSG00000157181 CDS Human protein_coding chr1:186348921 chr1:186348920 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_16558 0 0 1 0 1 C1orf27 chr1:186349016 5'GT 186349016 Upstream 97bp 15753 chrX 15534291 15534291 1 + G T BLCA 15534292 + 15534272 15534312 41 TAGTGGGTTCTTCGTGGACGGGAAGTTCCTGTGTTGCCAGC TAGTGGGTTCTTCGTGGACTGGAAGTTCCTGTGTTGCCAGC < 41bp 0.572045458266111 0.851888127663952 NA NA prediction 0.559685338795681 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15534292 chrX:15534291 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_16560 0 0 0 0 2 BMX chrX:15534235 3'AG 15534235 Downstream 57bp 15754 chrX 15534291 15534291 1 + G T BLCA 15534292 + 15534272 15534312 41 TAGTGGGTTCTTCGTGGACGGGAAGTTCCTGTGTTGCCAGC TAGTGGGTTCTTCGTGGACTGGAAGTTCCTGTGTTGCCAGC < 41bp 0.572045458266111 0.851888127663952 NA NA prediction 0.559685338795681 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15534292 chrX:15534291 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_16560 0 0 0 0 2 BMX chrX:15534354 5'GT 15534354 Upstream 64bp 15755 chr12 122677381 122677381 1 + G T UCEC 122677382 + 122677362 122677402 41 TCGAAGACATTGTTGAAGAGGTTACTGAAGAGGTCGAAGGG TCGAAGACATTGTTGAAGATGTTACTGAAGAGGTCGAAGGG < 41bp 0.552463413646934 0.832301594979072 NA NA prediction 0.559676362664275 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122677382 chr12:122677381 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_16561 0 0 0 0 1 LRRC43 chr12:122677292 3'AG 122677292 Downstream 90bp 15756 chr11 124743218 124743218 1 + G T LUAD 124743219 + 124743199 124743239 41 CTTCCAGGAGATGGACATGGGCTTCTACAGCTGCGTGGCCA CTTCCAGGAGATGGACATGTGCTTCTACAGCTGCGTGGCCA < 41bp 0.578144777830881 0.857976499248066 NA NA prediction 0.559663442834371 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743219 chr11:124743218 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_16562 0 0 0 0 2 ROBO3 chr11:124743206 3'AG 124743206 Downstream 13bp 15757 chr11 124743218 124743218 1 + G T LUAD 124743219 + 124743199 124743239 41 CTTCCAGGAGATGGACATGGGCTTCTACAGCTGCGTGGCCA CTTCCAGGAGATGGACATGTGCTTCTACAGCTGCGTGGCCA < 41bp 0.578144777830881 0.857976499248066 NA NA prediction 0.559663442834371 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124743219 chr11:124743218 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_16562 0 0 0 0 2 ROBO3 chr11:124743287 5'GT 124743287 Upstream 70bp 15758 chr16 84014711 84014711 1 + G T LUSC 84014712 + 84014692 84014732 41 TGAATCACTCTGTCCTGAAGGCCATGGGTTATACCAAGAAG TGAATCACTCTGTCCTGAATGCCATGGGTTATACCAAGAAG < 41bp 0.444130149664161 0.779822669077065 NA NA prediction 0.55964533815413 Functional Gain - NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84014712 chr16:84014711 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16563 0 0 0 0 2 NECAB2 chr16:84014635 3'AG 84014635 Downstream 77bp 15759 chr16 84014711 84014711 1 + G T LUSC 84014712 + 84014692 84014732 41 TGAATCACTCTGTCCTGAAGGCCATGGGTTATACCAAGAAG TGAATCACTCTGTCCTGAATGCCATGGGTTATACCAAGAAG < 41bp 0.444130149664161 0.779822669077065 NA NA prediction 0.55964533815413 Functional Gain - NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84014712 chr16:84014711 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16563 0 0 0 0 2 NECAB2 chr16:84014732 5'GT 84014732 Upstream 22bp 15760 chr8 42186710 42186710 1 + G T LUSC 42186711 + 42186691 42186731 41 GCCATACAGGACACTGTGAGGGAACAAGACCAGAGTTTCAC GCCATACAGGACACTGTGATGGAACAAGACCAGAGTTTCAC < 41bp 0.556255256634658 0.836071693276435 NA NA prediction 0.559632873283553 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42186711 chr8:42186710 nonsynonymous SNV 0.037 2 20 hm7G_associated_SNPs_16564 0 0 1 0 2 IKBKB chr8:42186642 3'AG 42186642 Downstream 69bp 15761 chr8 42186710 42186710 1 + G T LUSC 42186711 + 42186691 42186731 41 GCCATACAGGACACTGTGAGGGAACAAGACCAGAGTTTCAC GCCATACAGGACACTGTGATGGAACAAGACCAGAGTTTCAC < 41bp 0.556255256634658 0.836071693276435 NA NA prediction 0.559632873283553 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42186711 chr8:42186710 nonsynonymous SNV 0.037 2 20 hm7G_associated_SNPs_16564 0 0 1 0 2 IKBKB chr8:42186732 5'GT 42186732 Upstream 23bp 15762 chr5 113831669 113831669 1 + G T LUSC 113831670 + 113831650 113831690 41 AGAAGAGGATTGTTACCCTGGAAACAAAACTAGAGACTTTG AGAAGAGGATTGTTACCCTTGAAACAAAACTAGAGACTTTG < 41bp 0.543950718712472 0.823766847865094 NA NA prediction 0.559632258305244 Functional Gain - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113831670 chr5:113831669 synonymous SNV . 0 20 hm7G_associated_SNPs_16565 0 0 0 0 1 KCNN2 chr5:113831592 3'AG 113831592 Downstream 78bp 15763 chr3 126142395 126142395 1 + G T UCEC 126142396 + 126142376 126142416 41 ATGTCTTCCGAGAGCTGGAGGAGCAGAACCTGTCGCTGATC ATGTCTTCCGAGAGCTGGATGAGCAGAACCTGTCGCTGATC < 41bp 0.569326657874748 0.84914099931133 NA NA prediction 0.559628682873165 Functional Gain - CFAP100 ENSG00000163885 CDS Human protein_coding chr3:126142396 chr3:126142395 nonsynonymous SNV 0.908 4 20 hm7G_associated_SNPs_16566 0 0 0 0 2 CFAP100 chr3:126142336 3'AG 126142336 Downstream 60bp 15764 chr3 126142395 126142395 1 + G T UCEC 126142396 + 126142376 126142416 41 ATGTCTTCCGAGAGCTGGAGGAGCAGAACCTGTCGCTGATC ATGTCTTCCGAGAGCTGGATGAGCAGAACCTGTCGCTGATC < 41bp 0.569326657874748 0.84914099931133 NA NA prediction 0.559628682873165 Functional Gain - CFAP100 ENSG00000163885 CDS Human protein_coding chr3:126142396 chr3:126142395 nonsynonymous SNV 0.908 4 20 hm7G_associated_SNPs_16566 0 0 0 0 2 CFAP100 chr3:126142487 5'GT 126142487 Upstream 93bp 15765 chr12 27461330 27461330 1 + G T COAD 27461331 + 27461311 27461351 41 GAGTTCTTACGGCTCAAAAGGACCAGACTTGGCTTGGATGA GAGTTCTTACGGCTCAAAATGACCAGACTTGGCTTGGATGA < 41bp 0.553914304884729 0.833719616612908 NA NA prediction 0.559610623456358 Functional Gain - STK38L ENSG00000211455 CDS Human protein_coding chr12:27461331 chr12:27461330 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16567 0 0 1 0 2 STK38L chr12:27461272 3'AG 27461272 Downstream 59bp 15766 chr12 27461330 27461330 1 + G T COAD 27461331 + 27461311 27461351 41 GAGTTCTTACGGCTCAAAAGGACCAGACTTGGCTTGGATGA GAGTTCTTACGGCTCAAAATGACCAGACTTGGCTTGGATGA < 41bp 0.553914304884729 0.833719616612908 NA NA prediction 0.559610623456358 Functional Gain - STK38L ENSG00000211455 CDS Human protein_coding chr12:27461331 chr12:27461330 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16567 0 0 1 0 2 STK38L chr12:27461394 5'GT 27461394 Upstream 65bp 15767 chr1 36439039 36439039 1 + G T UCEC 36439040 + 36439020 36439060 41 ATGACCACCCTCTGGGAGGGGGCAGGGAAGTGTGGTTTGGA ATGACCACCCTCTGGGAGGTGGCAGGGAAGTGTGGTTTGGA < 41bp 0.566433045706917 0.846229513310076 NA NA prediction 0.559592935206319 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36439040 chr1:36439039 synonymous SNV . 0 20 hm7G_associated_SNPs_16568 0 0 0 0 2 AGO3 chr1:36438976 3'AG 36438976 Downstream 64bp 15768 chr1 36439039 36439039 1 + G T UCEC 36439040 + 36439020 36439060 41 ATGACCACCCTCTGGGAGGGGGCAGGGAAGTGTGGTTTGGA ATGACCACCCTCTGGGAGGTGGCAGGGAAGTGTGGTTTGGA < 41bp 0.566433045706917 0.846229513310076 NA NA prediction 0.559592935206319 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36439040 chr1:36439039 synonymous SNV . 0 20 hm7G_associated_SNPs_16568 0 0 0 0 2 AGO3 chr1:36439112 5'GT 36439112 Upstream 74bp 15769 chr2 86360331 86360331 1 + G T UCEC 86360332 + 86360312 86360352 41 TCGATTTGATTTGTCTAATGGAACAAATTGATGTTACCTTG TCGATTTGATTTGTCTAATTGAACAAATTGATGTTACCTTG < 41bp 0.47296741351044 0.779789713583186 NA NA prediction 0.559579427166372 Functional Gain - PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360332 chr2:86360331 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_16569 0 0 1 0 2 PTCD3 chr2:86360301 3'AG 86360301 Downstream 31bp 15770 chr2 86360331 86360331 1 + G T UCEC 86360332 + 86360312 86360352 41 TCGATTTGATTTGTCTAATGGAACAAATTGATGTTACCTTG TCGATTTGATTTGTCTAATTGAACAAATTGATGTTACCTTG < 41bp 0.47296741351044 0.779789713583186 NA NA prediction 0.559579427166372 Functional Gain - PTCD3 ENSG00000132300 CDS Human protein_coding chr2:86360332 chr2:86360331 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_16569 0 0 1 0 2 PTCD3 chr2:86360379 5'GT 86360379 Upstream 49bp 15771 chr18 47101787 47101787 1 + G T UCEC 47101788 + 47101768 47101808 41 GGGGCCGACATCCACAAGAGGCTCTCTCCGGACGATGCAGA GGGGCCGACATCCACAAGATGCTCTCTCCGGACGATGCAGA < 41bp 0.581172872556102 0.860940457817793 NA NA prediction 0.559535170523382 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101788 chr18:47101787 nonsynonymous SNV 0.191 5 20 hm7G_associated_SNPs_16573 0 0 0 0 1 LIPG chr18:47101739 3'AG 47101739 Downstream 49bp 15772 chr11 7079535 7079535 1 + G T PAAD 7079536 + 7079516 7079556 41 AAAGCTGTGGTCTCACAGAGGCTGGCTGTGAGTATCTTTCT AAAGCTGTGGTCTCACAGATGCTGGCTGTGAGTATCTTTCT < 41bp 0.548523000917819 0.828285408111627 NA NA prediction 0.559524814387616 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7079536 chr11:7079535 nonsynonymous SNV 0.480 0 20 hm7G_associated_SNPs_16574 0 0 0 0 1 NLRP14 chr11:7079511 3'AG 7079511 Downstream 25bp 15773 chr9 36643065 36643065 1 + G T UCEC 36643066 + 36643046 36643086 41 ACAACAGGCAAACAATGGAGGATTTAATTTCACTGGTAAGA ACAACAGGCAAACAATGGATGATTTAATTTCACTGGTAAGA < 41bp 0.468154826752146 0.779761007487295 NA NA prediction 0.55952201497459 Functional Gain - MELK ENSG00000165304 CDS Human protein_coding chr9:36643066 chr9:36643065 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_16575 0 0 1 0 1 MELK chr9:36642994 3'AG 36642994 Downstream 72bp 15774 chr16 50324465 50324465 1 + G T LUAD 50324466 + 50324446 50324486 41 TACGTCGAGTGTCTCCTGCGGCGCTGGCTCAGGGCCTTGGC TACGTCGAGTGTCTCCTGCTGCGCTGGCTCAGGGCCTTGGC < 41bp 0.441439075170935 0.779719806904603 NA NA prediction 0.559439613809207 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50324466 chr16:50324465 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_16579 0 0 1 0 1 ADCY7 chr16:50324368 3'AG 50324368 Downstream 98bp 15775 chr19 36362826 36362826 1 + G T UCEC 36362827 + 36362807 36362847 41 CTGAGGACGAGGAAGAGGAGGAATCCTTCCCACAGCCAGTA CTGAGGACGAGGAAGAGGATGAATCCTTCCCACAGCCAGTA < 41bp 0.441604383213888 0.779718042172277 NA NA prediction 0.559436084344554 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36362827 chr19:36362826 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_16580 0 0 0 0 1 APLP1 chr19:36362760 3'AG 36362760 Downstream 67bp 15776 chr1 154295766 154295766 1 + G T COAD 154295767 + 154295747 154295787 41 TGACAGTGACTGGCCCCAAGGAGACAGCCTCCATTTTTGCC TGACAGTGACTGGCCCCAATGAGACAGCCTCCATTTTTGCC < 41bp 0.461847324931654 0.779699854745358 NA NA prediction 0.559399709490716 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295767 chr1:154295766 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_16581 0 0 0 0 2 AQP10 chr1:154295717 3'AG 154295717 Downstream 50bp 15777 chr1 154295766 154295766 1 + G T COAD 154295767 + 154295747 154295787 41 TGACAGTGACTGGCCCCAAGGAGACAGCCTCCATTTTTGCC TGACAGTGACTGGCCCCAATGAGACAGCCTCCATTTTTGCC < 41bp 0.461847324931654 0.779699854745358 NA NA prediction 0.559399709490716 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295767 chr1:154295766 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_16581 0 0 0 0 2 AQP10 chr1:154295835 5'GT 154295835 Upstream 70bp 15778 chr7 24705296 24705296 1 + G T UCEC 24705297 + 24705277 24705317 41 CATTTGTTAGAAGAGACTGGGACAATTCAGGTGATGAGCTC CATTTGTTAGAAGAGACTGTGACAATTCAGGTGATGAGCTC < 41bp 0.557991963251681 0.837690797522669 NA NA prediction 0.559397668541975 Functional Gain - MPP6 ENSG00000105926 CDS Human protein_coding chr7:24705297 chr7:24705296 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16582 0 0 1 0 2 MPP6 chr7:24705207 3'AG 24705207 Downstream 90bp 15779 chr7 24705296 24705296 1 + G T UCEC 24705297 + 24705277 24705317 41 CATTTGTTAGAAGAGACTGGGACAATTCAGGTGATGAGCTC CATTTGTTAGAAGAGACTGTGACAATTCAGGTGATGAGCTC < 41bp 0.557991963251681 0.837690797522669 NA NA prediction 0.559397668541975 Functional Gain - MPP6 ENSG00000105926 CDS Human protein_coding chr7:24705297 chr7:24705296 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16582 0 0 1 0 2 MPP6 chr7:24705306 5'GT 24705306 Upstream 11bp 15780 chr20 30904662 30904662 1 + G T SKCM 30904663 + 30904643 30904683 41 ACTCAGAATGAGCTCACCAGGGAGCTGAAACTCAAGTAAGT ACTCAGAATGAGCTCACCATGGAGCTGAAACTCAAGTAAGT < 41bp 0.454813747188628 0.779694075084672 NA NA prediction 0.559388150169343 Functional Gain - KIF3B ENSG00000101350 CDS Human protein_coding chr20:30904663 chr20:30904662 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16583 0 0 1 0 1 KIF3B chr20:30904677 5'GT 30904677 Upstream 16bp 15781 chr16 58296306 58296306 1 + G T GBM 58296307 + 58296287 58296327 41 AGAAGGAAGAGGTGAGTGAGGCCCTTCACGATGTTGATTTT AGAAGGAAGAGGTGAGTGATGCCCTTCACGATGTTGATTTT < 41bp 0.561154751937568 0.840833203867568 NA NA prediction 0.55935690386 Functional Gain - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58296307 chr16:58296306 nonsynonymous SNV 0.848 1 20 hm7G_associated_SNPs_16584 0 0 1 0 1 CCDC113 chr16:58296289 3'AG 58296289 Downstream 18bp 15782 chr8 36766969 36766969 1 + G T GBM 36766970 + 36766950 36766990 41 ATACCAGGAAGGAGCTGAAGGACATAGTGTTCATTGGGTCT ATACCAGGAAGGAGCTGAATGACATAGTGTTCATTGGGTCT < 41bp 0.458543976523161 0.779666608043604 NA NA prediction 0.559333216087209 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36766970 chr8:36766969 nonsynonymous SNV 0.948 3 20 hm7G_associated_SNPs_16585 0 0 0 0 1 KCNU1 chr8:36767053 5'GT 36767053 Upstream 85bp 15783 chr19 54403522 54403522 1 + G T LUAD 54403523 + 54403503 54403543 41 TGATGGAGTACGTCACCGGGGGAGACTTGATGTACCACATT TGATGGAGTACGTCACCGGTGGAGACTTGATGTACCACATT < 41bp 0.437102907737096 0.779652734326661 NA NA prediction 0.559305468653323 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403523 chr19:54403522 synonymous SNV . 0 20 hm7G_associated_SNPs_16587 0 0 0 0 1 PRKCG chr19:54403487 3'AG 54403487 Downstream 36bp 15784 chr13 44463025 44463025 1 + G T COAD 44463026 + 44463006 44463046 41 TGCTGTTTTACTCTTCCAAGGGAATCAGCAGAGGCATTTCA TGCTGTTTTACTCTTCCAATGGAATCAGCAGAGGCATTTCA < 41bp 0.561228455237807 0.840880218062973 NA NA prediction 0.559303525650332 Functional Gain - LACC1 ENSG00000179630 CDS Human protein_coding chr13:44463026 chr13:44463025 nonsynonymous SNV 0.385 2 20 hm7G_associated_SNPs_16588 0 0 0 0 1 LACC1 chr13:44463118 5'GT 44463118 Upstream 94bp 15785 chr18 29054134 29054134 1 + G T UCEC 29054135 + 29054115 29054155 41 AGCGGTGGAAGGCACTTCAGGAATGGAAATGACCACTAAGC AGCGGTGGAAGGCACTTCATGAATGGAAATGACCACTAAGC < 41bp 0.556013866027833 0.835661246864623 NA NA prediction 0.559294761673579 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29054135 chr18:29054134 stopgain 0.859 1 20 hm7G_associated_SNPs_16591 0 0 0 0 1 DSG3 chr18:29054084 3'AG 29054084 Downstream 51bp 15786 chr8 118165318 118165318 1 + G T LUAD 118165319 + 118165299 118165339 41 AAGCGGCTGACATTTGGATGGCACCGAGCAGGTACGGTTCA AAGCGGCTGACATTTGGATTGCACCGAGCAGGTACGGTTCA < 41bp 0.557060007615871 0.836707371564926 NA NA prediction 0.559294727898111 Functional Gain - SLC30A8 ENSG00000164756 CDS Human protein_coding chr8:118165319 chr8:118165318 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_16592 0 0 0 0 1 SLC30A8 chr8:118165329 5'GT 118165329 Upstream 12bp 15787 chr12 27571064 27571064 1 + G T LUAD 27571065 + 27571045 27571085 41 CCAAGTCCTTCTGAAATGGGGGAGCTAGAGGCTACCAGGCA CCAAGTCCTTCTGAAATGGTGGAGCTAGAGGCTACCAGGCA < 41bp 0.462580301451025 0.779644489464252 NA NA prediction 0.559288978928505 Functional Gain - ARNTL2 ENSG00000029153 CDS Human protein_coding chr12:27571065 chr12:27571064 nonsynonymous SNV 0.034 1 20 hm7G_associated_SNPs_16593 0 0 0 0 2 ARNTL2 chr12:27571021 3'AG 27571021 Downstream 44bp 15788 chr12 27571064 27571064 1 + G T LUAD 27571065 + 27571045 27571085 41 CCAAGTCCTTCTGAAATGGGGGAGCTAGAGGCTACCAGGCA CCAAGTCCTTCTGAAATGGTGGAGCTAGAGGCTACCAGGCA < 41bp 0.462580301451025 0.779644489464252 NA NA prediction 0.559288978928505 Functional Gain - ARNTL2 ENSG00000029153 CDS Human protein_coding chr12:27571065 chr12:27571064 nonsynonymous SNV 0.034 1 20 hm7G_associated_SNPs_16593 0 0 0 0 2 ARNTL2 chr12:27571129 5'GT 27571129 Upstream 66bp 15789 chrX 140985270 140985270 1 + G T SKCM 140985271 + 140985251 140985291 41 GGAAGTGTTGAGTGCAATAGGGGTGTGTGCTGGGAGGGAGC GGAAGTGTTGAGTGCAATATGGGTGTGTGCTGGGAGGGAGC < 41bp 0.553447552948685 0.833063024286552 NA NA prediction 0.559230942675734 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140985271 chrX:140985270 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_16595 0 0 0 0 1 MAGEC3 chrX:140985272 5'GT 140985272 Upstream 3bp 15790 chr22 35717991 35717991 1 + G T LUSC 35717992 + 35717972 35718012 41 CAGTAAAGAAGAGAATCGTGGGGAATAAGAACTTCCACGAG CAGTAAAGAAGAGAATCGTTGGGAATAAGAACTTCCACGAG < 41bp 0.568693746603632 0.848305783677425 NA NA prediction 0.559224074147587 Functional Gain - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35717992 chr22:35717991 synonymous SNV . 0 20 hm7G_associated_SNPs_16597 0 0 1 0 2 TOM1 chr22:35717952 3'AG 35717952 Downstream 40bp 15791 chr22 35717991 35717991 1 + G T LUSC 35717992 + 35717972 35718012 41 CAGTAAAGAAGAGAATCGTGGGGAATAAGAACTTCCACGAG CAGTAAAGAAGAGAATCGTTGGGAATAAGAACTTCCACGAG < 41bp 0.568693746603632 0.848305783677425 NA NA prediction 0.559224074147587 Functional Gain - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35717992 chr22:35717991 synonymous SNV . 0 20 hm7G_associated_SNPs_16597 0 0 1 0 2 TOM1 chr22:35718030 5'GT 35718030 Upstream 40bp 15792 chr4 1807850 1807850 1 + G T KIRC 1807851 + 1807831 1807871 41 GATGAAGATCGCAGACTTCGGGCTGGCCCGGGACGTGCACA GATGAAGATCGCAGACTTCTGGCTGGCCCGGGACGTGCACA < 41bp 0.584384561178199 0.863995672495986 NA NA prediction 0.559222222635573 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807851 chr4:1807850 nonsynonymous SNV 0.377 5 20 hm7G_associated_SNPs_16598 0 0 1 0 2 FGFR3 chr4:1807778 3'AG 1807778 Downstream 73bp 15793 chr4 1807850 1807850 1 + G T KIRC 1807851 + 1807831 1807871 41 GATGAAGATCGCAGACTTCGGGCTGGCCCGGGACGTGCACA GATGAAGATCGCAGACTTCTGGCTGGCCCGGGACGTGCACA < 41bp 0.584384561178199 0.863995672495986 NA NA prediction 0.559222222635573 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807851 chr4:1807850 nonsynonymous SNV 0.377 5 20 hm7G_associated_SNPs_16598 0 0 1 0 2 FGFR3 chr4:1807900 5'GT 1807900 Upstream 51bp 15794 chr1 160143428 160143428 1 + G T LUSC 160143429 + 160143409 160143449 41 GGCCATTGCCAAGGGTGTGGGCATCATCTCAGAAGGCACTG GGCCATTGCCAAGGGTGTGTGCATCATCTCAGAAGGCACTG < 41bp 0.576602696906677 0.856207083542954 NA NA prediction 0.559208773272555 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160143429 chr1:160143428 nonsynonymous SNV 0.811 5 20 hm7G_associated_SNPs_16599 0 0 0 1 2 ATP1A4 chr1:160143371 3'AG 160143371 Downstream 58bp 15795 chr1 160143428 160143428 1 + G T LUSC 160143429 + 160143409 160143449 41 GGCCATTGCCAAGGGTGTGGGCATCATCTCAGAAGGCACTG GGCCATTGCCAAGGGTGTGTGCATCATCTCAGAAGGCACTG < 41bp 0.576602696906677 0.856207083542954 NA NA prediction 0.559208773272555 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160143429 chr1:160143428 nonsynonymous SNV 0.811 5 20 hm7G_associated_SNPs_16599 0 0 0 1 2 ATP1A4 chr1:160143507 5'GT 160143507 Upstream 80bp 15796 chr13 96086213 96086213 1 + G T UCEC 96086214 + 96086194 96086234 41 CGGTGATAACAGCCACTTGGGTTTACCAGGGTCTGTGGATG CGGTGATAACAGCCACTTGTGTTTACCAGGGTCTGTGGATG < 41bp 0.468289305387414 0.779603127267691 NA NA prediction 0.559206254535382 Functional Gain - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96086214 chr13:96086213 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16600 0 0 0 0 2 CLDN10 chr13:96086244 5'GT 96086244 Upstream 32bp 15797 chr13 96086213 96086213 1 + G T UCEC 96086214 + 96086194 96086234 41 CGGTGATAACAGCCACTTGGGTTTACCAGGGTCTGTGGATG CGGTGATAACAGCCACTTGTGTTTACCAGGGTCTGTGGATG < 41bp 0.468289305387414 0.779603127267691 NA NA prediction 0.559206254535382 Functional Gain - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96086214 chr13:96086213 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16600 0 0 0 0 2 CLDN10 chr13:96086301 5'GT 96086301 Upstream 89bp 15798 chr3 197598238 197598238 1 + G T LUAD 197598239 + 197598219 197598259 41 GTCTCTACCTTGTGATCTCGGAGCAGCTCTAACTGACGGTG GTCTCTACCTTGTGATCTCTGAGCAGCTCTAACTGACGGTG < 41bp 0.464037650049059 0.779595218648463 NA NA prediction 0.559190437296926 Functional Gain - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197598239 chr3:197598238 stopgain 0.860 1 20 hm7G_associated_SNPs_16601 0 0 1 0 2 LRCH3 chr3:197598196 3'AG 197598196 Downstream 43bp 15799 chr3 197598238 197598238 1 + G T LUAD 197598239 + 197598219 197598259 41 GTCTCTACCTTGTGATCTCGGAGCAGCTCTAACTGACGGTG GTCTCTACCTTGTGATCTCTGAGCAGCTCTAACTGACGGTG < 41bp 0.464037650049059 0.779595218648463 NA NA prediction 0.559190437296926 Functional Gain - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197598239 chr3:197598238 stopgain 0.860 1 20 hm7G_associated_SNPs_16601 0 0 1 0 2 LRCH3 chr3:197598333 5'GT 197598333 Upstream 96bp 15800 chr1 175087760 175087760 1 + G T LUAD 175087761 + 175087741 175087781 41 AATACAGCCACTGTCTCCTGGGACCCGGTGCAGGCCACCAT AATACAGCCACTGTCTCCTTGGACCCGGTGCAGGCCACCAT < 41bp 0.56855853735592 0.848153216053609 NA NA prediction 0.559189357395379 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175087761 chr1:175087760 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_16602 0 0 0 0 1 TNN chr1:175087697 3'AG 175087697 Downstream 64bp 15801 chr19 5772927 5772927 1 + G T LUAD 5772928 + 5772908 5772948 41 ACCTCCCAGCCGCAGAACTGGACCACCATGATAAAGGAATT ACCTCCCAGCCGCAGAACTTGACCACCATGATAAAGGAATT < 41bp 0.450080058733373 0.779590350729451 NA NA prediction 0.559180701458903 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5772928 chr19:5772927 nonsynonymous SNV 0.857 3 20 hm7G_associated_SNPs_16603 0 0 0 0 1 CATSPERD chr19:5772976 5'GT 5772976 Upstream 50bp 15802 chr6 43487467 43487467 1 + G T GBM 43487468 + 43487448 43487488 41 CAACTATGGCTGTGGAGAAGGTCCTGGTGTACAATAATACA CAACTATGGCTGTGGAGAATGTCCTGGTGTACAATAATACA < 41bp 0.54788877392507 0.827469571219993 NA NA prediction 0.559161594589846 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43487468 chr6:43487467 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16604 0 0 1 0 1 POLR1C chr6:43487444 3'AG 43487444 Downstream 24bp 15803 chr1 158913652 158913652 1 + G T COAD 158913653 + 158913633 158913673 41 TATGGCTGTAGTAGGAAAAGGAGAATGCCACAATATCCCCT TATGGCTGTAGTAGGAAAATGAGAATGCCACAATATCCCCT < 41bp 0.477465684788936 0.779578501131862 NA NA prediction 0.559157002263724 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158913653 chr1:158913652 stopgain 0.001 0 20 hm7G_associated_SNPs_16605 0 0 0 0 1 PYHIN1 chr1:158913580 3'AG 158913580 Downstream 73bp 15804 chr3 89499348 89499348 1 + G T LUSC 89499349 + 89499329 89499369 41 AATTAAAGCTGTAGATGAGGGCTATCGACTGCCACCCCCCA AATTAAAGCTGTAGATGAGTGCTATCGACTGCCACCCCCCA < 41bp 0.487858258920136 0.77956990411462 NA NA prediction 0.55913980822924 Functional Gain - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89499349 chr3:89499348 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_16606 0 0 0 0 1 EPHA3 chr3:89499327 3'AG 89499327 Downstream 22bp 15805 chr9 131256901 131256901 1 + G T LUAD 131256902 + 131256882 131256922 41 CAACTGCAGGGCTATGAGCGGAAGAACATCGACCTCACAGC CAACTGCAGGGCTATGAGCTGAAGAACATCGACCTCACAGC < 41bp 0.52858038129403 0.808140409959174 NA NA prediction 0.559120057330287 Functional Gain - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131256902 chr9:131256901 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16608 0 0 1 0 1 ODF2 chr9:131256947 5'GT 131256947 Upstream 47bp 15806 chr13 24465770 24465770 1 + G T UCEC 24465771 + 24465751 24465791 41 GGATCTTATCAAATTTAATGGGCACATCTGAAGAAGGAAAC GGATCTTATCAAATTTAATTGGCACATCTGAAGAAGGAAAC < 41bp 0.554828560915915 0.834383200372081 NA NA prediction 0.559109278912331 Functional Gain - C1QTNF9B;PCOTH ENSG00000205863 CDS Human protein_coding chr13:24465771 chr13:24465770 synonymous SNV . 0 20 hm7G_associated_SNPs_16609 0 0 0 0 1 C1QTNF9B;PCOTH chr13:24465752 3'AG 24465752 Downstream 19bp 15807 chr2 118583023 118583023 1 + G T LUSC 118583024 + 118583004 118583044 41 TGTTTTTATTTAATTCTAGGGAAAGCAAAAGCAAAATAAGC TGTTTTTATTTAATTCTAGTGAAAGCAAAAGCAAAATAAGC < 41bp 0.502005338007035 0.781552266813452 NA NA prediction 0.559093857612833 Functional Gain - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118583024 chr2:118583023 stopgain 0.979 1 20 hm7G_associated_SNPs_16611 0 0 1 0 1 DDX18 chr2:118583023 3'AG 118583023 Downstream 1bp 15808 chr15 79177357 79177357 1 + G T UCEC 79177358 + 79177338 79177378 41 AATCTTTGAAGACACATGAGGATATTGTAGCCCTTTTTCCT AATCTTTGAAGACACATGATGATATTGTAGCCCTTTTTCCT < 41bp 0.555598936094185 0.835129422802998 NA NA prediction 0.559060973417626 Functional Gain - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79177358 chr15:79177357 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16613 0 0 1 0 2 MORF4L1 chr15:79177309 3'AG 79177309 Downstream 49bp 15809 chr15 79177357 79177357 1 + G T UCEC 79177358 + 79177338 79177378 41 AATCTTTGAAGACACATGAGGATATTGTAGCCCTTTTTCCT AATCTTTGAAGACACATGATGATATTGTAGCCCTTTTTCCT < 41bp 0.555598936094185 0.835129422802998 NA NA prediction 0.559060973417626 Functional Gain - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79177358 chr15:79177357 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16613 0 0 1 0 2 MORF4L1 chr15:79177425 5'GT 79177425 Upstream 69bp 15810 chr4 128803010 128803010 1 + G T LIHC 128803011 + 128802991 128803031 41 TAAAGTTGGAAATCTGCTTGGTAAAGGATCATTTGCTGGTG TAAAGTTGGAAATCTGCTTTGTAAAGGATCATTTGCTGGTG < 41bp 0.531256562146759 0.810777819519424 NA NA prediction 0.559042514745331 Functional Gain - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128803011 chr4:128803010 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_16615 0 0 1 0 2 PLK4 chr4:128802986 3'AG 128802986 Downstream 25bp 15811 chr4 128803010 128803010 1 + G T LIHC 128803011 + 128802991 128803031 41 TAAAGTTGGAAATCTGCTTGGTAAAGGATCATTTGCTGGTG TAAAGTTGGAAATCTGCTTTGTAAAGGATCATTTGCTGGTG < 41bp 0.531256562146759 0.810777819519424 NA NA prediction 0.559042514745331 Functional Gain - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128803011 chr4:128803010 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_16615 0 0 1 0 2 PLK4 chr4:128803081 5'GT 128803081 Upstream 72bp 15812 chr17 47925313 47925313 1 - C A UCEC 47925312 - 47925292 47925332 41 CACTGTGGCAGGTGATGGTGGAGAGGAACAGACACTCAGCA CACTGTGGCAGGTGATGGTTGAGAGGAACAGACACTCAGCA < 41bp 0.552079138754155 0.831581596658422 NA NA prediction 0.559004915808534 Functional Gain - TAC4 ENSG00000176358 CDS Human protein_coding chr17:47925312 chr17:47925313 stopgain 0.009 0 20 hm7G_associated_SNPs_16616 0 0 0 0 2 TAC4 chr17:47925257 5'GT 47925257 Upstream 57bp 15813 chr17 47925313 47925313 1 - C A UCEC 47925312 - 47925292 47925332 41 CACTGTGGCAGGTGATGGTGGAGAGGAACAGACACTCAGCA CACTGTGGCAGGTGATGGTTGAGAGGAACAGACACTCAGCA < 41bp 0.552079138754155 0.831581596658422 NA NA prediction 0.559004915808534 Functional Gain - TAC4 ENSG00000176358 CDS Human protein_coding chr17:47925312 chr17:47925313 stopgain 0.009 0 20 hm7G_associated_SNPs_16616 0 0 0 0 2 TAC4 chr17:47925275 5'GT 47925275 Upstream 39bp 15814 chr19 45506246 45506246 1 + G T SARC 45506247 + 45506227 45506267 41 CTCTCGCTCGCCGTTTCCAGGAGCACAGGTGAGCAGCCCTC CTCTCGCTCGCCGTTTCCATGAGCACAGGTGAGCAGCCCTC < 41bp 0.572009721988845 0.851509900369842 NA NA prediction 0.559000356761994 Functional Gain - RELB ENSG00000104856 CDS Human other chr19:45506247 chr19:45506246 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_16617 0 0 1 0 1 RELB chr19:45506254 5'GT 45506254 Upstream 9bp 15815 chr20 2846072 2846072 1 + G T LUAD 2846073 + 2846053 2846093 41 GGCTGAAGCTGACTGCCCTGGCAGATTTGGAAGATTGGGAA GGCTGAAGCTGACTGCCCTTGCAGATTTGGAAGATTGGGAA < 41bp 0.445050257319269 0.779494952020135 NA NA prediction 0.558989904040269 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846073 chr20:2846072 synonymous SNV . 0 20 hm7G_associated_SNPs_16618 0 0 1 0 2 VPS16 chr20:2846045 3'AG 2846045 Downstream 28bp 15816 chr20 2846072 2846072 1 + G T LUAD 2846073 + 2846053 2846093 41 GGCTGAAGCTGACTGCCCTGGCAGATTTGGAAGATTGGGAA GGCTGAAGCTGACTGCCCTTGCAGATTTGGAAGATTGGGAA < 41bp 0.445050257319269 0.779494952020135 NA NA prediction 0.558989904040269 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2846073 chr20:2846072 synonymous SNV . 0 20 hm7G_associated_SNPs_16618 0 0 1 0 2 VPS16 chr20:2846141 5'GT 2846141 Upstream 70bp 15817 chr8 20068118 20068118 1 + G T UCEC 20068119 + 20068099 20068139 41 GGGAAAACCCATTGACAGAGGTCCTGTTGTACTGGCCGAAG GGGAAAACCCATTGACAGATGTCCTGTTGTACTGGCCGAAG < 41bp 0.455335631532527 0.779485894758427 NA NA prediction 0.558971789516855 Functional Gain - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20068119 chr8:20068118 nonsynonymous SNV 0.952 5 20 hm7G_associated_SNPs_16619 0 0 1 0 2 ATP6V1B2 chr8:20068080 3'AG 20068080 Downstream 39bp 15818 chr8 20068118 20068118 1 + G T UCEC 20068119 + 20068099 20068139 41 GGGAAAACCCATTGACAGAGGTCCTGTTGTACTGGCCGAAG GGGAAAACCCATTGACAGATGTCCTGTTGTACTGGCCGAAG < 41bp 0.455335631532527 0.779485894758427 NA NA prediction 0.558971789516855 Functional Gain - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20068119 chr8:20068118 nonsynonymous SNV 0.952 5 20 hm7G_associated_SNPs_16619 0 0 1 0 2 ATP6V1B2 chr8:20068157 5'GT 20068157 Upstream 40bp 15819 chr16 20471589 20471589 1 + G T LGG 20471590 + 20471570 20471610 41 ACTTTGCTAGTGATGTGTTGGATCACTGGGCTGACATGGAG ACTTTGCTAGTGATGTGTTTGATCACTGGGCTGACATGGAG < 41bp 0.562988859843368 0.842455354824253 NA NA prediction 0.55893298996177 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20471590 chr16:20471589 nonsynonymous SNV 0.948 1 20 hm7G_associated_SNPs_16621 0 0 0 1 1 ACSM2A chr16:20471613 5'GT 20471613 Upstream 25bp 15820 chr9 12694303 12694303 1 + G T LUAD 12694304 + 12694284 12694324 41 TAGGACATGTCACTGCAACGGCAATTTCTCAGGACACAACT TAGGACATGTCACTGCAACTGCAATTTCTCAGGACACAACT < 41bp 0.45962698864313 0.779457869452424 NA NA prediction 0.558915738904849 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12694304 chr9:12694303 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_16622 0 0 0 0 1 TYRP1 chr9:12694381 5'GT 12694381 Upstream 79bp 15821 chr18 39637886 39637886 1 + G T LUAD 39637887 + 39637867 39637907 41 TTTGGATATATTTTGGGTCGGGATCCAAAGCCTCTTCCTCC TTTGGATATATTTTGGGTCTGGATCCAAAGCCTCTTCCTCC < 41bp 0.474532172125478 0.779449327003692 NA NA prediction 0.558898654007383 Functional Gain - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39637887 chr18:39637886 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_16624 0 0 1 0 1 PIK3C3 chr18:39637847 3'AG 39637847 Downstream 40bp 15822 chr7 20795083 20795083 1 + G T LUAD 20795084 + 20795064 20795104 41 CCTTGATAAAGCCAGGACGGGAAGGACATGCCTAGTGGTCA CCTTGATAAAGCCAGGACGTGAAGGACATGCCTAGTGGTCA < 41bp 0.491184862006451 0.779446402715255 NA NA prediction 0.558892805430511 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20795084 chr7:20795083 stopgain 0.458 1 20 hm7G_associated_SNPs_16625 0 0 0 0 1 ABCB5 chr7:20795050 3'AG 20795050 Downstream 34bp 15823 chr13 25280490 25280490 1 + G T LGG 25280491 + 25280471 25280511 41 TGACTGGCATGGAGCTGAAGGACATGAGCTCAGAACAGCTG TGACTGGCATGGAGCTGAATGACATGAGCTCAGAACAGCTG < 41bp 0.577167904842337 0.856611063301022 NA NA prediction 0.55888631691737 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25280491 chr13:25280490 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_16627 0 0 0 0 1 ATP12A chr13:25280451 3'AG 25280451 Downstream 40bp 15824 chr13 24895231 24895231 1 + G T BLCA 24895232 + 24895212 24895252 41 AGGGGCTTGCAGGGCCCATGGGAGAGAAGGGCCTCCGAGGA AGGGGCTTGCAGGGCCCATTGGAGAGAAGGGCCTCCGAGGA < 41bp 0.565932550630307 0.845340334108889 NA NA prediction 0.558815566957166 Functional Gain - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24895232 chr13:24895231 nonsynonymous SNV 0.565 1 20 hm7G_associated_SNPs_16628 0 0 0 0 1 C1QTNF9 chr13:24895134 3'AG 24895134 Downstream 98bp 15825 chr8 118184785 118184785 1 + G T SARC 118184786 + 118184766 118184806 41 TATCAACAGCAGCCAGCCGGGACAGCCAAGTGGTTCGGAGA TATCAACAGCAGCCAGCCGTGACAGCCAAGTGGTTCGGAGA < 41bp 0.536327144101721 0.815690244666597 NA NA prediction 0.558726201129752 Functional Gain - SLC30A8 ENSG00000164756 CDS Human protein_coding chr8:118184786 chr8:118184785 synonymous SNV . 0 20 hm7G_associated_SNPs_16633 0 0 0 0 1 SLC30A8 chr8:118184775 3'AG 118184775 Downstream 11bp 15826 chr4 158060002 158060002 1 + G T HNSC 158060003 + 158059983 158060023 41 ACGATTTATCTGGCAGTCAGGAGATCCTGTGCAATTAGAAA ACGATTTATCTGGCAGTCATGAGATCCTGTGCAATTAGAAA < 41bp 0.545786148931675 0.825128116148231 NA NA prediction 0.558683934433113 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:158060003 chr4:158060002 stopgain 0.996 1 20 hm7G_associated_SNPs_16636 0 0 0 0 2 GLRB chr4:158059961 3'AG 158059961 Downstream 42bp 15827 chr4 158060002 158060002 1 + G T HNSC 158060003 + 158059983 158060023 41 ACGATTTATCTGGCAGTCAGGAGATCCTGTGCAATTAGAAA ACGATTTATCTGGCAGTCATGAGATCCTGTGCAATTAGAAA < 41bp 0.545786148931675 0.825128116148231 NA NA prediction 0.558683934433113 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:158060003 chr4:158060002 stopgain 0.996 1 20 hm7G_associated_SNPs_16636 0 0 0 0 2 GLRB chr4:158060101 5'GT 158060101 Upstream 100bp 15828 chr17 72233606 72233606 1 + G T LIHC 72233607 + 72233587 72233627 41 TGTGGAGGGAGGTCACCATGGAGCTGACCAAGCTATCCGAC TGTGGAGGGAGGTCACCATTGAGCTGACCAAGCTATCCGAC < 41bp 0.432980404933249 0.779334802093554 NA NA prediction 0.558669604187107 Functional Gain - TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72233607 chr17:72233606 nonsynonymous SNV 0.113 0 20 hm7G_associated_SNPs_16637 0 0 0 0 1 TTYH2 chr17:72233653 5'GT 72233653 Upstream 48bp 15829 chr11 34162647 34162647 1 + G T LAML 34162648 + 34162628 34162668 41 TCCTTTAGGCTCTTCTCTTGGGGATTGGCCTGCAGCATAAG TCCTTTAGGCTCTTCTCTTTGGGATTGGCCTGCAGCATAAG < 41bp 0.576214834740305 0.85554924962782 NA NA prediction 0.55866882977503 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34162648 chr11:34162647 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_16638 0 0 1 0 1 NAT10 chr11:34162636 3'AG 34162636 Downstream 12bp 15830 chr4 17835966 17835966 1 + G T STAD 17835967 + 17835947 17835987 41 TAAAAATAAGTGCTTTAAAGGCAATCTTTGACCAACTGATG TAAAAATAAGTGCTTTAAATGCAATCTTTGACCAACTGATG < 41bp 0.481267329646918 0.779323051353879 NA NA prediction 0.558646102707758 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17835967 chr4:17835966 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_16639 0 0 1 0 1 NCAPG chr4:17835922 3'AG 17835922 Downstream 45bp 15831 chr12 49719661 49719661 1 + G T UCEC 49719662 + 49719642 49719682 41 TGTGCCCCCAGAGGCTACAGGCTCTGGTGAGTGCCCTTGAG TGTGCCCCCAGAGGCTACATGCTCTGGTGAGTGCCCTTGAG < 41bp 0.448699709974243 0.779319522896549 NA NA prediction 0.558639045793099 Functional Gain - TROAP ENSG00000135451 CDS Human protein_coding chr12:49719662 chr12:49719661 nonsynonymous SNV 0.448 1 20 hm7G_associated_SNPs_16640 0 0 1 0 1 TROAP chr12:49719667 5'GT 49719667 Upstream 7bp 15832 chr1 28897777 28897777 1 + G T UCEC 28897778 + 28897758 28897798 41 CAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGG CAGAACTACTATGCTCAGTTGGGCTATGACCAGAACACAGG < 41bp 0.454538374113042 0.77929728135307 NA NA prediction 0.558594562706141 Functional Gain - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28897778 chr1:28897777 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16645 0 0 1 0 2 TRNAU1AP chr1:28897688 3'AG 28897688 Downstream 90bp 15833 chr1 28897777 28897777 1 + G T UCEC 28897778 + 28897758 28897798 41 CAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGG CAGAACTACTATGCTCAGTTGGGCTATGACCAGAACACAGG < 41bp 0.454538374113042 0.77929728135307 NA NA prediction 0.558594562706141 Functional Gain - TRNAU1AP ENSG00000180098 CDS Human protein_coding chr1:28897778 chr1:28897777 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16645 0 0 1 0 2 TRNAU1AP chr1:28897850 5'GT 28897850 Upstream 74bp 15834 chr15 91423395 91423395 1 + G T CESC 91423396 + 91423376 91423416 41 GAGCCCAACCACATCACTCGGCTGGAGCACGCTCAGGCGCG GAGCCCAACCACATCACTCTGCTGGAGCACGCTCAGGCGCG < 41bp 0.582274925980272 0.861565946208044 NA NA prediction 0.558582040455544 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91423396 chr15:91423395 nonsynonymous SNV 0.483 0 20 hm7G_associated_SNPs_16646 0 0 1 0 1 FURIN chr15:91423324 3'AG 91423324 Downstream 72bp 15835 chrX 47101492 47101492 1 + G T GBM 47101493 + 47101473 47101513 41 ATCAACAGGAGGTGGCACAGGAGGCATGGCAAAACCACAAA ATCAACAGGAGGTGGCACATGAGGCATGGCAAAACCACAAA < 41bp 0.577042127016262 0.856294174544068 NA NA prediction 0.558504095055612 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101493 chrX:47101492 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_16649 0 0 0 0 1 USP11 chrX:47101481 3'AG 47101481 Downstream 12bp 15836 chr19 39788687 39788687 1 + G T LUAD 39788688 + 39788668 39788708 41 CTGCTGGCCCAGCCCTGGAGGACGTCCTAGACCAGCCCCTT CTGCTGGCCCAGCCCTGGATGACGTCCTAGACCAGCCCCTT < 41bp 0.45415674042893 0.779244004625407 NA NA prediction 0.558488009250814 Functional Gain - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39788688 chr19:39788687 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16650 0 0 0 0 2 IFNL1 chr19:39788604 3'AG 39788604 Downstream 84bp 15837 chr19 39788687 39788687 1 + G T LUAD 39788688 + 39788668 39788708 41 CTGCTGGCCCAGCCCTGGAGGACGTCCTAGACCAGCCCCTT CTGCTGGCCCAGCCCTGGATGACGTCCTAGACCAGCCCCTT < 41bp 0.45415674042893 0.779244004625407 NA NA prediction 0.558488009250814 Functional Gain - IFNL1 ENSG00000182393 CDS Human protein_coding chr19:39788688 chr19:39788687 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16650 0 0 0 0 2 IFNL1 chr19:39788747 5'GT 39788747 Upstream 61bp 15838 chr15 31362357 31362357 1 - C A BLCA 31362356 - 31362336 31362376 41 CACCCAGCAAAAATGAAGAGGAAAGCAAACAGGTGGAGACT CACCCAGCAAAAATGAAGATGAAAGCAAACAGGTGGAGACT < 41bp 0.574855926339656 0.854095261526297 NA NA prediction 0.558478670373283 Functional Gain - TRPM1 ENSG00000134160 CDS Human protein_coding chr15:31362356 chr15:31362357 nonsynonymous SNV 0.054 0 20 hm7G_associated_SNPs_16651 0 0 0 0 1 TRPM1 chr15:31362429 3'AG 31362429 Downstream 73bp 15839 chr12 95663885 95663885 1 + G T KIRC 95663886 + 95663866 95663906 41 TCCAAGTCAGCATCTCATCGGTCTTCGGAAAGCTGTCTACC TCCAAGTCAGCATCTCATCTGTCTTCGGAAAGCTGTCTACC < 41bp 0.476344045884421 0.779235938067959 NA NA prediction 0.558471876135917 Functional Gain - VEZT ENSG00000028203 CDS Human protein_coding chr12:95663886 chr12:95663885 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16652 0 0 1 0 2 VEZT chr12:95663815 3'AG 95663815 Downstream 71bp 15840 chr12 95663885 95663885 1 + G T KIRC 95663886 + 95663866 95663906 41 TCCAAGTCAGCATCTCATCGGTCTTCGGAAAGCTGTCTACC TCCAAGTCAGCATCTCATCTGTCTTCGGAAAGCTGTCTACC < 41bp 0.476344045884421 0.779235938067959 NA NA prediction 0.558471876135917 Functional Gain - VEZT ENSG00000028203 CDS Human protein_coding chr12:95663886 chr12:95663885 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16652 0 0 1 0 2 VEZT chr12:95663827 3'AG 95663827 Downstream 59bp 15841 chr12 9013542 9013542 1 + G T UCEC 9013543 + 9013523 9013563 41 CATTGCTGGAGATGGGAAAGGATGTAGATGTAAGTTCTCCT CATTGCTGGAGATGGGAAATGATGTAGATGTAAGTTCTCCT < 41bp 0.465253720211052 0.779234645056428 NA NA prediction 0.558469290112855 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9013543 chr12:9013542 nonsynonymous SNV 0.015 0 20 hm7G_associated_SNPs_16653 0 0 0 0 1 A2ML1 chr12:9013551 5'GT 9013551 Upstream 10bp 15842 chr16 57775655 57775655 1 + G T LUAD 57775656 + 57775636 57775676 41 GGTGCTGGGCAAAGCCTCCGGGCGGCTGCTGGCTACAGGCG GGTGCTGGGCAAAGCCTCCTGGCGGCTGCTGGCTACAGGCG < 41bp 0.585393113998461 0.864617888448048 NA NA prediction 0.558449548899172 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57775656 chr16:57775655 nonsynonymous SNV 0.954 4 20 hm7G_associated_SNPs_16655 1 0 1 0 2 KATNB1 chr16:57775599 3'AG 57775599 Downstream 57bp 15843 chr16 57775655 57775655 1 + G T LUAD 57775656 + 57775636 57775676 41 GGTGCTGGGCAAAGCCTCCGGGCGGCTGCTGGCTACAGGCG GGTGCTGGGCAAAGCCTCCTGGCGGCTGCTGGCTACAGGCG < 41bp 0.585393113998461 0.864617888448048 NA NA prediction 0.558449548899172 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57775656 chr16:57775655 nonsynonymous SNV 0.954 4 20 hm7G_associated_SNPs_16655 1 0 1 0 2 KATNB1 chr16:57775729 5'GT 57775729 Upstream 75bp 15844 chr7 107303819 107303819 1 + G T STAD 107303820 + 107303800 107303840 41 TCCCCAAATACCGAGTCAAGGAATGGCTGCTTAGTGACGTC TCCCCAAATACCGAGTCAATGAATGGCTGCTTAGTGACGTC < 41bp 0.453735448885915 0.779220865094307 NA NA prediction 0.558441730188615 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107303820 chr7:107303819 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16656 0 0 0 0 2 SLC26A4 chr7:107303741 3'AG 107303741 Downstream 79bp 15845 chr7 107303819 107303819 1 + G T STAD 107303820 + 107303800 107303840 41 TCCCCAAATACCGAGTCAAGGAATGGCTGCTTAGTGACGTC TCCCCAAATACCGAGTCAATGAATGGCTGCTTAGTGACGTC < 41bp 0.453735448885915 0.779220865094307 NA NA prediction 0.558441730188615 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107303820 chr7:107303819 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16656 0 0 0 0 2 SLC26A4 chr7:107303880 5'GT 107303880 Upstream 62bp 15846 chr11 67200123 67200123 1 + G T LUSC 67200124 + 67200104 67200144 41 GCATCTTCCTGGAAGATACGGCCTGGTGGGTGTTAATCCTC GCATCTTCCTGGAAGATACTGCCTGGTGGGTGTTAATCCTC < 41bp 0.576809615061015 0.855993102314514 NA NA prediction 0.558366974506998 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67200124 chr11:67200123 synonymous SNV . 0 20 hm7G_associated_SNPs_16659 0 0 1 1 2 RPS6KB2 chr11:67200071 3'AG 67200071 Downstream 53bp 15847 chr11 67200123 67200123 1 + G T LUSC 67200124 + 67200104 67200144 41 GCATCTTCCTGGAAGATACGGCCTGGTGGGTGTTAATCCTC GCATCTTCCTGGAAGATACTGCCTGGTGGGTGTTAATCCTC < 41bp 0.576809615061015 0.855993102314514 NA NA prediction 0.558366974506998 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67200124 chr11:67200123 synonymous SNV . 0 20 hm7G_associated_SNPs_16659 0 0 1 1 2 RPS6KB2 chr11:67200128 5'GT 67200128 Upstream 6bp 15848 chr4 17524572 17524572 1 + G T ACC 17524573 + 17524553 17524593 41 TGGCCTTGGCCCTGGCTCTGGTCAGCATGGGCTTTGCCATT TGGCCTTGGCCCTGGCTCTTGTCAGCATGGGCTTTGCCATT < 41bp 0.560858925465896 0.840038179228445 NA NA prediction 0.558358507525097 Functional Gain - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524573 chr4:17524572 synonymous SNV . 0 20 hm7G_associated_SNPs_16660 0 0 0 0 2 CLRN2 chr4:17524487 3'AG 17524487 Downstream 86bp 15849 chr4 17524572 17524572 1 + G T ACC 17524573 + 17524553 17524593 41 TGGCCTTGGCCCTGGCTCTGGTCAGCATGGGCTTTGCCATT TGGCCTTGGCCCTGGCTCTTGTCAGCATGGGCTTTGCCATT < 41bp 0.560858925465896 0.840038179228445 NA NA prediction 0.558358507525097 Functional Gain - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524573 chr4:17524572 synonymous SNV . 0 20 hm7G_associated_SNPs_16660 0 0 0 0 2 CLRN2 chr4:17524666 5'GT 17524666 Upstream 95bp 15850 chr6 7845455 7845455 1 + G T SARC 7845456 + 7845436 7845476 41 CCCAGATTCCTGAGGGTGAGGTGGTGACGGCTGCAGAATTC CCCAGATTCCTGAGGGTGATGTGGTGACGGCTGCAGAATTC < 41bp 0.459285473642601 0.7791785052468 NA NA prediction 0.558357010493599 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7845456 chr6:7845455 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16661 0 0 1 0 1 BMP6 chr6:7845373 3'AG 7845373 Downstream 83bp 15851 chr9 95841858 95841858 1 + G T rs41313323 95841859 + 95841839 95841879 41 CCGTGAGCGGGCCCAGCCAGGCGCACGACAACCACAGCTTC CCGTGAGCGGGCCCAGCCATGCGCACGACAACCACAGCTTC < 41bp 0.585538552063608 0.864715833449588 NA NA prediction 0.558354562771959 Functional Gain - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95841859 chr9:95841858 nonsynonymous SNV 0.458 2 20 hm7G_associated_SNPs_16662 0 0 0 0 1 SUSD3 chr9:95841884 5'GT 95841884 Upstream 27bp 15852 chr6 168291633 168291633 1 + G T UCEC 168291634 + 168291614 168291654 41 GCAAGACACCCAAGGGAAAGGAGAGAGCTGACGGGTCTGGC GCAAGACACCCAAGGGAAATGAGAGAGCTGACGGGTCTGGC < 41bp 0.451421464444122 0.779170524110029 NA NA prediction 0.558341048220058 Functional Gain - AFDN ENSG00000130396 CDS Human protein_coding chr6:168291634 chr6:168291633 nonsynonymous SNV 0.233 0 20 hm7G_associated_SNPs_16664 0 0 1 0 1 AFDN chr6:168291709 5'GT 168291709 Upstream 77bp 15853 chr16 25235772 25235772 1 + G T SKCM 25235773 + 25235753 25235793 41 AGGTGGCAGGGGCGTTGGTGGCAGAGATCATCCTGACGACG AGGTGGCAGGGGCGTTGGTTGCAGAGATCATCCTGACGACG < 41bp 0.580303585315031 0.859473540123693 NA NA prediction 0.558339909617324 Functional Gain - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25235773 chr16:25235772 synonymous SNV . 0 20 hm7G_associated_SNPs_16665 0 0 0 0 1 AQP8 chr16:25235683 3'AG 25235683 Downstream 90bp 15854 chr5 131670426 131670426 1 + G T SKCM 131670427 + 131670407 131670447 41 TCAGGATGCTGACCTCAGTGGGTTACTTTGCTCTGTCTCTG TCAGGATGCTGACCTCAGTTGGTTACTTTGCTCTGTCTCTG < 41bp 0.45402397900654 0.779169555622244 NA NA prediction 0.558339111244489 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131670427 chr5:131670426 synonymous SNV . 0 20 hm7G_associated_SNPs_16666 0 0 0 0 1 SLC22A4 chr5:131670411 3'AG 131670411 Downstream 16bp 15855 chr12 9086978 9086978 1 + G T PRAD 9086979 + 9086959 9086999 41 CCATGGTGTCTAGACAAATGGGTGACTCAAAACCCCCACAG CCATGGTGTCTAGACAAATTGGTGACTCAAAACCCCCACAG < 41bp 0.446446690295629 0.779165215753266 NA NA prediction 0.558330431506532 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9086979 chr12:9086978 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_16667 0 0 0 0 1 PHC1 chr12:9087074 5'GT 9087074 Upstream 97bp 15856 chr5 75597367 75597367 1 + G T LIHC 75597368 + 75597348 75597388 41 GAACTGTACCCCACAGACCGGAGGTATGTTGAAATGGGCCT GAACTGTACCCCACAGACCTGAGGTATGTTGAAATGGGCCT < 41bp 0.474213657753986 0.77912942339261 NA NA prediction 0.558258846785219 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75597368 chr5:75597367 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_16668 0 0 0 0 1 SV2C chr5:75597370 5'GT 75597370 Upstream 4bp 15857 chr11 1090835 1090835 1 + G T LUAD 1090836 + 1090816 1090856 41 CTGCTACTGGGAGATCTGTGGCCCCAACGGGACGGTGGAGA CTGCTACTGGGAGATCTGTTGCCCCAACGGGACGGTGGAGA < 41bp 0.452218770171593 0.779127379791449 NA NA prediction 0.558254759582898 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1090836 chr11:1090835 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_16669 0 0 0 0 1 MUC2 chr11:1090782 3'AG 1090782 Downstream 54bp 15858 chr14 90455387 90455387 1 + G T COAD 90455388 + 90455368 90455408 41 AGAGAGCATGCTGACACTGGGGAAGGAAAGCAAGACTCCAG AGAGAGCATGCTGACACTGTGGAAGGAAAGCAAGACTCCAG < 41bp 0.562425816398863 0.841550913142535 NA NA prediction 0.558250193487344 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90455388 chr14:90455387 nonsynonymous SNV 0.568 1 20 hm7G_associated_SNPs_16670 0 0 1 1 1 TDP1 chr14:90455434 5'GT 90455434 Upstream 48bp 15859 chr4 184129152 184129152 1 + G T COAD 184129153 + 184129133 184129173 41 AACAATGGAGGGGGGAACAGGAGAAGATGCTCAAGGACTAC AACAATGGAGGGGGGAACATGAGAAGATGCTCAAGGACTAC < 41bp 0.469654018233276 0.779123981234128 NA NA prediction 0.558247962468256 Functional Gain - WWC2 ENSG00000151718 CDS Human protein_coding chr4:184129153 chr4:184129152 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_16671 0 0 1 0 1 WWC2 chr4:184129106 3'AG 184129106 Downstream 47bp 15860 chr12 7065680 7065680 1 + G T UCEC 7065681 + 7065661 7065701 41 TCTGGCAGATGGCGTGGCAGGAGAACAGCCGTGTCATCGTC TCTGGCAGATGGCGTGGCATGAGAACAGCCGTGTCATCGTC < 41bp 0.582705531058466 0.861817605309274 NA NA prediction 0.558224148501616 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7065681 chr12:7065680 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_16674 0 0 0 0 2 PTPN6 chr12:7065582 3'AG 7065582 Downstream 99bp 15861 chr12 7065680 7065680 1 + G T UCEC 7065681 + 7065661 7065701 41 TCTGGCAGATGGCGTGGCAGGAGAACAGCCGTGTCATCGTC TCTGGCAGATGGCGTGGCATGAGAACAGCCGTGTCATCGTC < 41bp 0.582705531058466 0.861817605309274 NA NA prediction 0.558224148501616 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7065681 chr12:7065680 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_16674 0 0 0 0 2 PTPN6 chr12:7065731 5'GT 7065731 Upstream 52bp 15862 chr16 53500990 53500990 1 + G T GBM 53500991 + 53500971 53501011 41 TCATGCCACCTCAGAACCTGGAAAGGGCAGATGAAATTTGC TCATGCCACCTCAGAACCTTGAAAGGGCAGATGAAATTTGC < 41bp 0.573871116274146 0.852977521656216 NA NA prediction 0.558212810764139 Functional Gain - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53500991 chr16:53500990 synonymous SNV . 0 20 hm7G_associated_SNPs_16676 0 0 1 0 2 RBL2 chr16:53500970 3'AG 53500970 Downstream 21bp 15863 chr16 53500990 53500990 1 + G T GBM 53500991 + 53500971 53501011 41 TCATGCCACCTCAGAACCTGGAAAGGGCAGATGAAATTTGC TCATGCCACCTCAGAACCTTGAAAGGGCAGATGAAATTTGC < 41bp 0.573871116274146 0.852977521656216 NA NA prediction 0.558212810764139 Functional Gain - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53500991 chr16:53500990 synonymous SNV . 0 20 hm7G_associated_SNPs_16676 0 0 1 0 2 RBL2 chr16:53501081 5'GT 53501081 Upstream 92bp 15864 chrX 152106656 152106656 1 + G T CESC 152106657 + 152106637 152106677 41 TCTGCTGTCCCTGCTGATAGGAAGAGCAACAGCACAGCAGC TCTGCTGTCCCTGCTGATATGAAGAGCAACAGCACAGCAGC < 41bp 0.566911480337253 0.846014620950289 NA NA prediction 0.558206281226073 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152106657 chrX:152106656 nonsynonymous SNV 0.119 2 20 hm7G_associated_SNPs_16677 0 0 0 0 2 ZNF185 chrX:152106618 3'AG 152106618 Downstream 39bp 15865 chrX 152106656 152106656 1 + G T CESC 152106657 + 152106637 152106677 41 TCTGCTGTCCCTGCTGATAGGAAGAGCAACAGCACAGCAGC TCTGCTGTCCCTGCTGATATGAAGAGCAACAGCACAGCAGC < 41bp 0.566911480337253 0.846014620950289 NA NA prediction 0.558206281226073 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152106657 chrX:152106656 nonsynonymous SNV 0.119 2 20 hm7G_associated_SNPs_16677 0 0 0 0 2 ZNF185 chrX:152106707 5'GT 152106707 Upstream 52bp 15866 chr17 16331647 16331647 1 + G T THCA 16331648 + 16331628 16331668 41 CAGCTGTGGTACTTCTGGCGGCGCCACGTGTTCATCTGGAT CAGCTGTGGTACTTCTGGCTGCGCCACGTGTTCATCTGGAT < 41bp 0.57656652498331 0.855664898591874 NA NA prediction 0.558196747217129 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16331648 chr17:16331647 nonsynonymous SNV 0.900 2 20 hm7G_associated_SNPs_16678 0 0 0 0 2 TRPV2 chr17:16331631 3'AG 16331631 Downstream 17bp 15867 chr17 16331647 16331647 1 + G T THCA 16331648 + 16331628 16331668 41 CAGCTGTGGTACTTCTGGCGGCGCCACGTGTTCATCTGGAT CAGCTGTGGTACTTCTGGCTGCGCCACGTGTTCATCTGGAT < 41bp 0.57656652498331 0.855664898591874 NA NA prediction 0.558196747217129 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16331648 chr17:16331647 nonsynonymous SNV 0.900 2 20 hm7G_associated_SNPs_16678 0 0 0 0 2 TRPV2 chr17:16331701 5'GT 16331701 Upstream 55bp 15868 chr11 970176 970176 1 + G T SARC 970177 + 970157 970197 41 CCTTTTCTGTAGGTGACAAGGCTCTTGATGGCTATAGTAAA CCTTTTCTGTAGGTGACAATGCTCTTGATGGCTATAGTAAA < 41bp 0.450162156581607 0.779089552659511 NA NA prediction 0.558179105319022 Functional Gain - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:970177 chr11:970176 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16679 0 0 1 1 1 AP2A2 chr11:970169 3'AG 970169 Downstream 8bp 15869 chr12 56142371 56142371 1 + G T THCA 56142372 + 56142352 56142392 41 GCCCTTCTCTCTTATCAGCGGACCCAGCAGTACAGACAGAT GCCCTTCTCTCTTATCAGCTGACCCAGCAGTACAGACAGAT < 41bp 0.568716245815229 0.847800887194896 NA NA prediction 0.558169282759335 Functional Gain - GDF11 ENSG00000135414 CDS Human protein_coding chr12:56142372 chr12:56142371 synonymous SNV . 0 20 hm7G_associated_SNPs_16680 0 0 0 0 1 GDF11 chr12:56142370 3'AG 56142370 Downstream 2bp 15870 chr1 12034759 12034759 1 + G T LGG 12034760 + 12034740 12034780 41 TGTTCCATCCGAGCCCCAAGGAAGGGCTGGACCCTCATGCA TGTTCCATCCGAGCCCCAATGAAGGGCTGGACCCTCATGCA < 41bp 0.547486663439956 0.826567762742082 NA NA prediction 0.558162198604253 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12034760 chr1:12034759 nonsynonymous SNV 0.458 4 20 hm7G_associated_SNPs_16681 0 0 1 0 1 PLOD1 chr1:12034710 3'AG 12034710 Downstream 50bp 15871 chr2 95540607 95540607 1 + G T UCEC 95540608 + 95540588 95540628 41 CTGGCCTCGGCCAACCTGCGGGTGCTGGTGGACTGCATCCT CTGGCCTCGGCCAACCTGCTGGTGCTGGTGGACTGCATCCT < 41bp 0.56513095738848 0.844205721698679 NA NA prediction 0.558149528620397 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95540608 chr2:95540607 nonsynonymous SNV 0.099 4 20 hm7G_associated_SNPs_16682 0 0 0 0 1 TEKT4 chr2:95540521 3'AG 95540521 Downstream 87bp 15872 chr19 44571366 44571366 1 + G T SKCM 44571367 + 44571347 44571387 41 TCCAAATGTGAAGACTGTGGGAAGCGCTACAAGAGGCGCTT TCCAAATGTGAAGACTGTGTGAAGCGCTACAAGAGGCGCTT < 41bp 0.485948121183258 0.779072485502773 NA NA prediction 0.558144971005545 Functional Gain - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44571367 chr19:44571366 nonsynonymous SNV 0.295 3 20 hm7G_associated_SNPs_16683 0 0 1 0 1 ZNF223 chr19:44571426 5'GT 44571426 Upstream 61bp 15873 chr9 127572134 127572134 1 + G T UCEC 127572135 + 127572115 127572155 41 CTACAACTGGATCGGCACAGGCCACGTGGTGTACCAGGGCG CTACAACTGGATCGGCACATGCCACGTGGTGTACCAGGGCG < 41bp 0.565753940398538 0.844821632555826 NA NA prediction 0.558135384314576 Functional Gain - OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127572135 chr9:127572134 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_16685 0 0 1 0 1 OLFML2A chr9:127572087 3'AG 127572087 Downstream 48bp 15874 chr7 128454759 128454759 1 + G T LUSC 128454760 + 128454740 128454780 41 GCTAGCATGGATGAGCAGGGGCGGCTTCTGGTAGTGCAGGA GCTAGCATGGATGAGCAGGTGCGGCTTCTGGTAGTGCAGGA < 41bp 0.446231078518042 0.779056458431065 NA NA prediction 0.55811291686213 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128454760 chr7:128454759 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_16687 0 0 1 0 1 CCDC136 chr7:128454692 3'AG 128454692 Downstream 68bp 15875 chr20 31607499 31607499 1 + G T LUAD 31607500 + 31607480 31607520 41 TGCGGCTGCAGCCCTTCGTGGAGGTCCTGGCCACAGCCTCC TGCGGCTGCAGCCCTTCGTTGAGGTCCTGGCCACAGCCTCC < 41bp 0.443471439832112 0.77904398095763 NA NA prediction 0.558087961915261 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31607500 chr20:31607499 synonymous SNV . 0 20 hm7G_associated_SNPs_16689 0 0 0 0 1 BPIFB2 chr20:31607556 5'GT 31607556 Upstream 58bp 15876 chr18 28968847 28968847 1 + G T LUAD 28968848 + 28968828 28968868 41 TTTCCACAGATCTATTGCCGGGCTCTGAATTCACGGGGTGA TTTCCACAGATCTATTGCCTGGCTCTGAATTCACGGGGTGA < 41bp 0.473649458573557 0.779043197051201 NA NA prediction 0.558086394102402 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28968848 chr18:28968847 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_16690 0 0 0 0 1 DSG4 chr18:28968837 3'AG 28968837 Downstream 11bp 15877 chr13 58240849 58240849 1 + G T COAD 58240850 + 58240830 58240870 41 TGAGAGACAGTGGGCACGGGGACAGTGATCAGGCTGACAGT TGAGAGACAGTGGGCACGGTGACAGTGATCAGGCTGACAGT < 41bp 0.541914596768133 0.820924301823233 NA NA prediction 0.558019410110198 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58240850 chr13:58240849 synonymous SNV . 0 20 hm7G_associated_SNPs_16691 0 0 1 0 2 PCDH17 chr13:58240795 3'AG 58240795 Downstream 55bp 15878 chr13 58240849 58240849 1 + G T COAD 58240850 + 58240830 58240870 41 TGAGAGACAGTGGGCACGGGGACAGTGATCAGGCTGACAGT TGAGAGACAGTGGGCACGGTGACAGTGATCAGGCTGACAGT < 41bp 0.541914596768133 0.820924301823233 NA NA prediction 0.558019410110198 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58240850 chr13:58240849 synonymous SNV . 0 20 hm7G_associated_SNPs_16691 0 0 1 0 2 PCDH17 chr13:58240798 3'AG 58240798 Downstream 52bp 15879 chr2 233428989 233428989 1 + G T KIRP 233428990 + 233428970 233429010 41 GGAGGTTTTATAGCCACATGGTACGTCCTGGGGACCTGACA GGAGGTTTTATAGCCACATTGTACGTCCTGGGGACCTGACA < 41bp 0.456722477474601 0.778989070373555 NA NA prediction 0.557978140747111 Functional Gain - EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428990 chr2:233428989 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16692 0 0 1 0 2 EIF4E2 chr2:233428957 3'AG 233428957 Downstream 33bp 15880 chr2 233428989 233428989 1 + G T KIRP 233428990 + 233428970 233429010 41 GGAGGTTTTATAGCCACATGGTACGTCCTGGGGACCTGACA GGAGGTTTTATAGCCACATTGTACGTCCTGGGGACCTGACA < 41bp 0.456722477474601 0.778989070373555 NA NA prediction 0.557978140747111 Functional Gain - EIF4E2 ENSG00000135930 CDS Human protein_coding chr2:233428990 chr2:233428989 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16692 0 0 1 0 2 EIF4E2 chr2:233429061 5'GT 233429061 Upstream 73bp 15881 chr13 52158888 52158888 1 + G T LUAD 52158889 + 52158869 52158909 41 CTGCTGCAGCGGATGGAGGGGTCCCAGGAGGTGGTGAATAT CTGCTGCAGCGGATGGAGGTGTCCCAGGAGGTGGTGAATAT < 41bp 0.47734656755252 0.778985339829381 NA NA prediction 0.557970679658762 Functional Gain - WDFY2 ENSG00000139668 CDS Human protein_coding chr13:52158889 chr13:52158888 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16693 0 0 1 1 1 WDFY2 chr13:52158960 5'GT 52158960 Upstream 73bp 15882 chr11 67159667 67159667 1 + G T LUAD 67159668 + 67159648 67159688 41 CCACTCCCTGTCCCGCATCGGGGACGAGCTCTACCTGGAAC CCACTCCCTGTCCCGCATCTGGGACGAGCTCTACCTGGAAC < 41bp 0.444871547012323 0.778970152539386 NA NA prediction 0.557940305078773 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67159668 chr11:67159667 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16694 0 0 1 0 2 RAD9A chr11:67159632 3'AG 67159632 Downstream 36bp 15883 chr11 67159667 67159667 1 + G T LUAD 67159668 + 67159648 67159688 41 CCACTCCCTGTCCCGCATCGGGGACGAGCTCTACCTGGAAC CCACTCCCTGTCCCGCATCTGGGACGAGCTCTACCTGGAAC < 41bp 0.444871547012323 0.778970152539386 NA NA prediction 0.557940305078773 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67159668 chr11:67159667 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16694 0 0 1 0 2 RAD9A chr11:67159702 5'GT 67159702 Upstream 36bp 15884 chr19 54933396 54933396 1 + G T ESCA 54933397 + 54933377 54933417 41 TGGAGAGGCTGGGCGAGGCGGTGAGGACAGAGCTGACCACC TGGAGAGGCTGGGCGAGGCTGTGAGGACAGAGCTGACCACC < 41bp 0.455544217461598 0.778969424500041 NA NA prediction 0.557938849000082 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54933397 chr19:54933396 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_16695 0 0 1 0 2 TTYH1 chr19:54933364 3'AG 54933364 Downstream 33bp 15885 chr19 54933396 54933396 1 + G T ESCA 54933397 + 54933377 54933417 41 TGGAGAGGCTGGGCGAGGCGGTGAGGACAGAGCTGACCACC TGGAGAGGCTGGGCGAGGCTGTGAGGACAGAGCTGACCACC < 41bp 0.455544217461598 0.778969424500041 NA NA prediction 0.557938849000082 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54933397 chr19:54933396 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_16695 0 0 1 0 2 TTYH1 chr19:54933373 3'AG 54933373 Downstream 24bp 15886 chr5 37396660 37396660 1 + G T LGG 37396661 + 37396641 37396681 41 AGGAAGAAGAAGAGGAAGAGGAGGAAGAGGAAGTAAGTATT AGGAAGAAGAAGAGGAAGATGAGGAAGAGGAAGTAAGTATT < 41bp 0.530764575150408 0.809730966186055 NA NA prediction 0.557932782071295 Functional Gain - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37396661 chr5:37396660 nonsynonymous SNV 0.840 0 20 hm7G_associated_SNPs_16696 0 0 1 0 1 WDR70 chr5:37396672 5'GT 37396672 Upstream 13bp 15887 chr11 68703735 68703735 1 + G T SKCM 68703736 + 68703716 68703756 41 TTTCTTGCTGAGGACCGGAGGATCAACGTGGCTGTCACCCG TTTCTTGCTGAGGACCGGATGATCAACGTGGCTGTCACCCG < 41bp 0.570850839269722 0.849799264043759 NA NA prediction 0.557896849548073 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68703736 chr11:68703735 nonsynonymous SNV 0.846 5 20 hm7G_associated_SNPs_16699 0 0 1 0 1 IGHMBP2 chr11:68703705 3'AG 68703705 Downstream 31bp 15888 chr11 74329760 74329760 1 + G T COAD 74329761 + 74329741 74329781 41 GGTTTCCCAGCAGCCCAAAGGAATTATGGGAATGTTTGCCT GGTTTCCCAGCAGCCCAAATGAATTATGGGAATGTTTGCCT < 41bp 0.450234887765208 0.778943309732688 NA NA prediction 0.557886619465376 Functional Gain - POLD3 ENSG00000077514 CDS Human protein_coding chr11:74329761 chr11:74329760 stopgain 1.000 1 20 hm7G_associated_SNPs_16701 0 0 1 0 1 POLD3 chr11:74329849 5'GT 74329849 Upstream 90bp 15889 chr12 102589749 102589749 1 + G T LUSC 102589750 + 102589730 102589770 41 GGGTGTAAATCCATCTGTTGGAAGATCAACAATTGGAACGA GGGTGTAAATCCATCTGTTTGAAGATCAACAATTGGAACGA < 41bp 0.496579967007655 0.778932392598729 NA NA prediction 0.557864785197457 Functional Gain - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102589750 chr12:102589749 stopgain 0.993 2 20 hm7G_associated_SNPs_16702 0 0 1 0 1 PARPBP chr12:102589729 3'AG 102589729 Downstream 21bp 15890 chr2 68804987 68804987 1 + G T LUAD 68804988 + 68804968 68805008 41 TGAAGATAATGATAATGTTGGGCAACCCAATGAGTATGACC TGAAGATAATGATAATGTTTGGCAACCCAATGAGTATGACC < 41bp 0.478530689126478 0.778924777058599 NA NA prediction 0.557849554117198 Functional Gain - APLF ENSG00000169621 CDS Human protein_coding chr2:68804988 chr2:68804987 nonsynonymous SNV 0.073 4 20 hm7G_associated_SNPs_16703 0 0 0 0 1 APLF chr2:68804952 3'AG 68804952 Downstream 36bp 15891 chr19 10200361 10200361 1 + G T COAD 10200362 + 10200342 10200382 41 GAAGATATGAAGCAGGACCGGGACATTCAGGTGAGTTGGTG GAAGATATGAAGCAGGACCTGGACATTCAGGTGAGTTGGTG < 41bp 0.572442560016754 0.851355346083802 NA NA prediction 0.557825572134097 Functional Gain - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200362 chr19:10200361 nonsynonymous SNV 0.923 1 20 hm7G_associated_SNPs_16704 0 0 1 0 2 C19orf66 chr19:10200333 3'AG 10200333 Downstream 29bp 15892 chr19 10200361 10200361 1 + G T COAD 10200362 + 10200342 10200382 41 GAAGATATGAAGCAGGACCGGGACATTCAGGTGAGTTGGTG GAAGATATGAAGCAGGACCTGGACATTCAGGTGAGTTGGTG < 41bp 0.572442560016754 0.851355346083802 NA NA prediction 0.557825572134097 Functional Gain - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200362 chr19:10200361 nonsynonymous SNV 0.923 1 20 hm7G_associated_SNPs_16704 0 0 1 0 2 C19orf66 chr19:10200371 5'GT 10200371 Upstream 11bp 15893 chr15 68446007 68446007 1 + G T SARC 68446008 + 68445988 68446028 41 TTACGAGCAAAGGGAATAAGGAATCCGGATCATTCTAGAGC TTACGAGCAAAGGGAATAATGAATCCGGATCATTCTAGAGC < 41bp 0.560467312708309 0.839368473403683 NA NA prediction 0.557802321390749 Functional Gain - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68446008 chr15:68446007 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16706 0 0 1 0 2 PIAS1 chr15:68445928 3'AG 68445928 Downstream 80bp 15894 chr15 68446007 68446007 1 + G T SARC 68446008 + 68445988 68446028 41 TTACGAGCAAAGGGAATAAGGAATCCGGATCATTCTAGAGC TTACGAGCAAAGGGAATAATGAATCCGGATCATTCTAGAGC < 41bp 0.560467312708309 0.839368473403683 NA NA prediction 0.557802321390749 Functional Gain - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68446008 chr15:68446007 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16706 0 0 1 0 2 PIAS1 chr15:68446033 5'GT 68446033 Upstream 27bp 15895 chrX 119504684 119504684 1 + G T STAD 119504685 + 119504665 119504705 41 ATACCAACCTTCACGGAGCGGGTAAAGCCTCCTGGTGAGTG ATACCAACCTTCACGGAGCTGGTAAAGCCTCCTGGTGAGTG < 41bp 0.560602495139209 0.839489149580248 NA NA prediction 0.557773308882077 Functional Gain - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119504685 chrX:119504684 nonsynonymous SNV 0.419 3 20 hm7G_associated_SNPs_16707 0 0 0 0 1 ATP1B4 chrX:119504698 5'GT 119504698 Upstream 15bp 15896 chr3 137717885 137717885 1 + G T KIRC 137717886 + 137717866 137717906 41 CTGTGTCCGAGAGAGCTCTGGCTTCACCGAGTGCCGGGGCT CTGTGTCCGAGAGAGCTCTTGCTTCACCGAGTGCCGGGGCT < 41bp 0.560714828734103 0.839599828975906 NA NA prediction 0.557770000483606 Functional Gain - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137717886 chr3:137717885 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_16708 0 0 0 0 1 CLDN18 chr3:137717930 5'GT 137717930 Upstream 46bp 15897 chr19 4013016 4013016 1 + G T COAD 4013017 + 4012997 4013037 41 AGCACGAGCTCGTCACCAGGGCCCTCCAGCTGGTGCAGTTT AGCACGAGCTCGTCACCAGTGCCCTCCAGCTGGTGCAGTTT < 41bp 0.439430921198347 0.778870016057844 NA NA prediction 0.557740032115688 Functional Gain - PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4013017 chr19:4013016 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_16709 0 0 1 0 1 PIAS4 chr19:4012921 3'AG 4012921 Downstream 96bp 15898 chr2 159651927 159651927 1 + G T COAD 159651928 + 159651908 159651948 41 GCTCTCCCCTCGGAAAGGGGGACATCCTCCTGCAGGTAGGC GCTCTCCCCTCGGAAAGGGTGACATCCTCCTGCAGGTAGGC < 41bp 0.559423145032067 0.838267215491837 NA NA prediction 0.557688140919539 Functional Gain - DAPL1 ENSG00000163331 CDS Human protein_coding chr2:159651928 chr2:159651927 stopgain 0.979 1 20 hm7G_associated_SNPs_16710 0 0 0 0 1 DAPL1 chr2:159651942 5'GT 159651942 Upstream 16bp 15899 chr6 132014756 132014756 1 + G T LUSC 132014757 + 132014737 132014777 41 TTGTGGATCAACAGTGGCTGGCTGTTAGGTTCGTGTATCTG TTGTGGATCAACAGTGGCTTGCTGTTAGGTTCGTGTATCTG < 41bp 0.55844542872657 0.837288296863556 NA NA prediction 0.557685736273972 Functional Gain - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:132014757 chr6:132014756 synonymous SNV . 0 20 hm7G_associated_SNPs_16711 0 0 1 0 1 ENPP3 chr6:132014764 5'GT 132014764 Upstream 9bp 15900 chr5 68425367 68425367 1 + G T OV 68425368 + 68425348 68425388 41 TATGTCTGGCCTAAGTACTGGATTTCATGATGTTCTGGCTA TATGTCTGGCCTAAGTACTTGATTTCATGATGTTCTGGCTA < 41bp 0.508301015881045 0.787115199105265 NA NA prediction 0.55762836644844 Functional Gain - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68425368 chr5:68425367 stopgain 1.000 1 20 hm7G_associated_SNPs_16712 0 0 1 0 1 SLC30A5 chr5:68425274 3'AG 68425274 Downstream 94bp 15901 chr4 123336756 123336756 1 + G T STAD 123336757 + 123336737 123336777 41 ATTGTGGATGGCCTGAGTGGGAAGATCACTGAAAGGTTAAA ATTGTGGATGGCCTGAGTGTGAAGATCACTGAAAGGTTAAA < 41bp 0.534929336621767 0.81374108886426 NA NA prediction 0.557623504484986 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123336757 chr4:123336756 nonsynonymous SNV 0.990 5 20 hm7G_associated_SNPs_16713 0 0 0 0 1 ADAD1 chr4:123336771 5'GT 123336771 Upstream 16bp 15902 chr1 154296839 154296839 1 + G T LUSC 154296840 + 154296820 154296860 41 CAGCCACTTACCAGCTGTTGGTGGCTCTGCACCACCCTGAG CAGCCACTTACCAGCTGTTTGTGGCTCTGCACCACCCTGAG < 41bp 0.472901662336568 0.778795085569138 NA NA prediction 0.557590171138276 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296840 chr1:154296839 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_16715 0 0 0 0 1 AQP10 chr1:154296758 3'AG 154296758 Downstream 82bp 15903 chr5 146658911 146658911 1 + G T SARC 146658912 + 146658892 146658932 41 AAGTGAGAAATGTCTTCAAGGAACTCCAGATCATGCAGGGT AAGTGAGAAATGTCTTCAATGAACTCCAGATCATGCAGGGT < 41bp 0.573458415980673 0.852239335706795 NA NA prediction 0.557561839452244 Functional Gain - STK32A ENSG00000169302 CDS Human protein_coding chr5:146658912 chr5:146658911 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16716 0 0 0 0 1 STK32A chr5:146658961 5'GT 146658961 Upstream 51bp 15904 chr15 65219136 65219136 1 + G T HNSC 65219137 + 65219117 65219157 41 TCACAGGGCAGCTGAGCACGGGCAGCTGGATGCTCTGGACT TCACAGGGCAGCTGAGCACTGGCAGCTGGATGCTCTGGACT < 41bp 0.585787450684721 0.864566555449389 NA NA prediction 0.557558209529336 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219137 chr15:65219136 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_16717 0 0 0 0 2 ANKDD1A chr15:65219100 3'AG 65219100 Downstream 37bp 15905 chr15 65219136 65219136 1 + G T HNSC 65219137 + 65219117 65219157 41 TCACAGGGCAGCTGAGCACGGGCAGCTGGATGCTCTGGACT TCACAGGGCAGCTGAGCACTGGCAGCTGGATGCTCTGGACT < 41bp 0.585787450684721 0.864566555449389 NA NA prediction 0.557558209529336 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219137 chr15:65219136 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_16717 0 0 0 0 2 ANKDD1A chr15:65219198 5'GT 65219198 Upstream 63bp 15906 chr10 106130692 106130692 1 + G T LUAD 106130693 + 106130673 106130713 41 TCAAATGCGCCTTGACATCGGGAAGCTCAACAAAATCAGAG TCAAATGCGCCTTGACATCTGGAAGCTCAACAAAATCAGAG < 41bp 0.555585839221253 0.834361302129013 NA NA prediction 0.55755092581552 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106130693 chr10:106130692 nonsynonymous SNV 0.882 3 20 hm7G_associated_SNPs_16718 0 0 1 0 1 CFAP58 chr10:106130653 3'AG 106130653 Downstream 40bp 15907 chr9 71845118 71845118 1 + G T HNSC 71845119 + 71845099 71845139 41 GGACCTCGGCGGAGCAGGAGGGCCTTCAAGAAGGAGACCAG GGACCTCGGCGGAGCAGGATGGCCTTCAAGAAGGAGACCAG < 41bp 0.440646792921561 0.77876618426613 NA NA prediction 0.55753236853226 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71845119 chr9:71845118 nonsynonymous SNV 0.800 2 20 hm7G_associated_SNPs_16720 0 0 1 0 1 TJP2 chr9:71845148 5'GT 71845148 Upstream 31bp 15908 chrX 128926606 128926606 1 + G T UCEC 128926607 + 128926587 128926627 41 TCCTCTCCCCCAACAGAAAGGAGATGTGATCCAGATCATTG TCCTCTCCCCCAACAGAAATGAGATGTGATCCAGATCATTG < 41bp 0.573004356376333 0.851769925398017 NA NA prediction 0.557531138043368 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926607 chrX:128926606 stopgain 1.000 1 20 hm7G_associated_SNPs_16721 0 0 0 0 1 SASH3 chrX:128926603 3'AG 128926603 Downstream 4bp 15909 chr16 57067548 57067548 1 + G T STAD 57067549 + 57067529 57067569 41 CAGGAAAGTGACGGCCAGAGGAAAGGGGCTCAGAGCAGAAG CAGGAAAGTGACGGCCAGATGAAAGGGGCTCAGAGCAGAAG < 41bp 0.456513231712296 0.778761281257569 NA NA prediction 0.557522562515137 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57067549 chr16:57067548 nonsynonymous SNV 0.296 3 20 hm7G_associated_SNPs_16722 0 0 0 0 2 NLRC5 chr16:57067516 3'AG 57067516 Downstream 33bp 15910 chr16 57067548 57067548 1 + G T STAD 57067549 + 57067529 57067569 41 CAGGAAAGTGACGGCCAGAGGAAAGGGGCTCAGAGCAGAAG CAGGAAAGTGACGGCCAGATGAAAGGGGCTCAGAGCAGAAG < 41bp 0.456513231712296 0.778761281257569 NA NA prediction 0.557522562515137 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57067549 chr16:57067548 nonsynonymous SNV 0.296 3 20 hm7G_associated_SNPs_16722 0 0 0 0 2 NLRC5 chr16:57067581 5'GT 57067581 Upstream 34bp 15911 chr9 77611470 77611470 1 - C A SKCM 77611469 - 77611449 77611489 41 TTTTCTTCATTAGATACCTGGGACTGTATTGCTACCTGTTT TTTTCTTCATTAGATACCTTGGACTGTATTGCTACCTGTTT < 41bp 0.474922139063182 0.778759952114108 NA NA prediction 0.557519904228217 Functional Gain - CARNMT1 ENSG00000156017 CDS Human protein_coding chr9:77611469 chr9:77611470 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16723 0 0 1 0 1 CARNMT1 chr9:77611476 3'AG 77611476 Downstream 7bp 15912 chr6 26507040 26507040 1 + G T UCEC 26507041 + 26507021 26507061 41 GAAAGACCCAGAGAGAGGAGGAATGAATTCAGCTCTAAAGG GAAAGACCCAGAGAGAGGATGAATGAATTCAGCTCTAAAGG < 41bp 0.478583319252013 0.778755034868205 NA NA prediction 0.557510069736409 Functional Gain - BTN1A1 ENSG00000124557 CDS Human protein_coding chr6:26507041 chr6:26507040 nonsynonymous SNV 0.443 1 20 hm7G_associated_SNPs_16724 0 0 0 0 1 BTN1A1 chr6:26507060 5'GT 26507060 Upstream 21bp 15913 chr3 196555243 196555243 1 + G T LUSC 196555244 + 196555224 196555264 41 GCTTGACACCACTGATCATGGCAGCTAAAGAAGCAATGAAG GCTTGACACCACTGATCATTGCAGCTAAAGAAGCAATGAAG < 41bp 0.530457726076878 0.809199998008578 NA NA prediction 0.557484543863401 Functional Gain - PAK2 ENSG00000180370 CDS Human protein_coding chr3:196555244 chr3:196555243 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16726 0 0 0 0 1 PAK2 chr3:196555190 3'AG 196555190 Downstream 54bp 15914 chr12 21661455 21661455 1 + G T LUSC 21661456 + 21661436 21661476 41 TATTGGTTGGCCTTTGATAGGCATGATCTTCGAAATTTATG TATTGGTTGGCCTTTGATATGCATGATCTTCGAAATTTATG < 41bp 0.486190014988284 0.778736474789576 NA NA prediction 0.557472949579151 Functional Gain - GOLT1B ENSG00000111711 CDS Human protein_coding chr12:21661456 chr12:21661455 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16727 0 0 1 0 1 GOLT1B chr12:21661495 5'GT 21661495 Upstream 41bp 15915 chr8 22397006 22397006 1 + G T THCA 22397007 + 22396987 22397027 41 GTAGAAGCGGTAGAGGCCCGGGAAGGTATGGCCATATTACT GTAGAAGCGGTAGAGGCCCTGGAAGGTATGGCCATATTACT < 41bp 0.556050363244497 0.834781675587467 NA NA prediction 0.557462624685939 Functional Gain - PPP3CC ENSG00000120910 CDS Human protein_coding chr8:22397007 chr8:22397006 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_16728 0 0 1 0 2 PPP3CC chr8:22396982 3'AG 22396982 Downstream 25bp 15916 chr8 22397006 22397006 1 + G T THCA 22397007 + 22396987 22397027 41 GTAGAAGCGGTAGAGGCCCGGGAAGGTATGGCCATATTACT GTAGAAGCGGTAGAGGCCCTGGAAGGTATGGCCATATTACT < 41bp 0.556050363244497 0.834781675587467 NA NA prediction 0.557462624685939 Functional Gain - PPP3CC ENSG00000120910 CDS Human protein_coding chr8:22397007 chr8:22397006 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_16728 0 0 1 0 2 PPP3CC chr8:22397011 5'GT 22397011 Upstream 6bp 15917 chrX 152686195 152686195 1 + G T READ 152686196 + 152686176 152686216 41 AAGGTGGCAAGGAGGGGCAGGCGGCGAGGTCGTCTGTGCTC AAGGTGGCAAGGAGGGGCATGCGGCGAGGTCGTCTGTGCTC < 41bp 0.552630509876878 0.831357713164304 NA NA prediction 0.557454406574852 Functional Gain - ZFP92 ENSG00000189420 CDS Human protein_coding chrX:152686196 chrX:152686195 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_16729 0 0 0 0 1 ZFP92 chrX:152686101 3'AG 152686101 Downstream 95bp 15918 chr10 88730307 88730307 1 + G T SKCM 88730308 + 88730288 88730328 41 GGCCTCTGACACCTTCTCTGGGATTGGGAAAAAATTCGGCC GGCCTCTGACACCTTCTCTTGGATTGGGAAAAAATTCGGCC < 41bp 0.523912832844041 0.802631505400844 NA NA prediction 0.557437345113605 Functional Gain - ADIRF ENSG00000148671 CDS Human protein_coding chr10:88730308 chr10:88730307 nonsynonymous SNV 0.017 3 20 hm7G_associated_SNPs_16730 0 0 0 0 1 ADIRF chr10:88730233 3'AG 88730233 Downstream 75bp 15919 chr9 133305924 133305924 1 + G T ESCA 133305925 + 133305905 133305945 41 CTCTCCGTCCGGGTCCCATGGCCCTGAGCAGTGTGGGCCGG CTCTCCGTCCGGGTCCCATTGCCCTGAGCAGTGTGGGCCGG < 41bp 0.462091803550825 0.778716767563527 NA NA prediction 0.557433535127055 Functional Gain - HMCN2 ENSG00000148357 CDS Human protein_coding chr9:133305925 chr9:133305924 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_16731 0 0 0 0 1 HMCN2 chr9:133305991 5'GT 133305991 Upstream 68bp 15920 chr3 12854865 12854865 1 + G T PAAD 12854866 + 12854846 12854886 41 AGGAGCAGATGGAGACAGAGGATAGTGAATTCAGTGAGCAA AGGAGCAGATGGAGACAGATGATAGTGAATTCAGTGAGCAA < 41bp 0.578131388814981 0.85684810894654 NA NA prediction 0.55743344026312 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12854866 chr3:12854865 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_16732 0 0 0 0 1 CAND2 chr3:12854887 5'GT 12854887 Upstream 23bp 15921 chr10 75550811 75550811 1 + G T OV 75550812 + 75550792 75550832 41 GTCTGCTGCGCCCTCTGAGGGGCCGTGAGCCAGAGGGCGTC GTCTGCTGCGCCCTCTGAGTGGCCGTGAGCCAGAGGGCGTC < 41bp 0.440445014463298 0.77870914615764 NA NA prediction 0.55741829231528 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75550812 chr10:75550811 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_16733 0 0 1 0 1 ZSWIM8 chr10:75550733 3'AG 75550733 Downstream 79bp 15922 chr1 160100252 160100252 1 + G T LUAD 160100253 + 160100233 160100273 41 CATCTGGAAAGTTTCCTCGGGGCTTCAAATTCGACACGGAT CATCTGGAAAGTTTCCTCGTGGCTTCAAATTCGACACGGAT < 41bp 0.440371936371009 0.778704633709301 NA NA prediction 0.557409267418601 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160100253 chr1:160100252 synonymous SNV . 0 20 hm7G_associated_SNPs_16735 0 0 0 0 1 ATP1A2 chr1:160100212 3'AG 160100212 Downstream 41bp 15923 chr19 44652983 44652983 1 + G T LUAD 44652984 + 44652964 44653004 41 AGGAGGAGCTGGGGCTGCTGGACCCTGTCCAGAGGAATCTG AGGAGGAGCTGGGGCTGCTTGACCCTGTCCAGAGGAATCTG < 41bp 0.573675057999957 0.852379166209813 NA NA prediction 0.557408216419712 Functional Gain - ZNF234 ENSG00000263002 CDS Human protein_coding chr19:44652984 chr19:44652983 synonymous SNV . 0 20 hm7G_associated_SNPs_16736 0 0 1 0 2 ZNF234 chr19:44652924 3'AG 44652924 Downstream 60bp 15924 chr19 44652983 44652983 1 + G T LUAD 44652984 + 44652964 44653004 41 AGGAGGAGCTGGGGCTGCTGGACCCTGTCCAGAGGAATCTG AGGAGGAGCTGGGGCTGCTTGACCCTGTCCAGAGGAATCTG < 41bp 0.573675057999957 0.852379166209813 NA NA prediction 0.557408216419712 Functional Gain - ZNF234 ENSG00000263002 CDS Human protein_coding chr19:44652984 chr19:44652983 synonymous SNV . 0 20 hm7G_associated_SNPs_16736 0 0 1 0 2 ZNF234 chr19:44653050 5'GT 44653050 Upstream 68bp 15925 chr4 15841656 15841656 1 + G T THCA 15841657 + 15841637 15841677 41 CTTCTATTTTAGCACTTTTGGGAGTGTGGAAGTCCATAATT CTTCTATTTTAGCACTTTTTGGAGTGTGGAAGTCCATAATT < 41bp 0.550995804221354 0.82969199052643 NA NA prediction 0.557392372610152 Functional Gain - CD38 ENSG00000004468 CDS Human protein_coding chr4:15841657 chr4:15841656 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_16737 0 0 0 0 2 CD38 chr4:15841649 3'AG 15841649 Downstream 8bp 15926 chr4 15841656 15841656 1 + G T THCA 15841657 + 15841637 15841677 41 CTTCTATTTTAGCACTTTTGGGAGTGTGGAAGTCCATAATT CTTCTATTTTAGCACTTTTTGGAGTGTGGAAGTCCATAATT < 41bp 0.550995804221354 0.82969199052643 NA NA prediction 0.557392372610152 Functional Gain - CD38 ENSG00000004468 CDS Human protein_coding chr4:15841657 chr4:15841656 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_16737 0 0 0 0 2 CD38 chr4:15841741 5'GT 15841741 Upstream 86bp 15927 chr4 15063789 15063789 1 + G T STAD 15063790 + 15063770 15063810 41 TGAGCTAAAATACCCAAAAGGTGCTGGGCGAGTTGCTTTCT TGAGCTAAAATACCCAAAATGTGCTGGGCGAGTTGCTTTCT < 41bp 0.472064483701612 0.77869112099594 NA NA prediction 0.557382241991879 Functional Gain - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15063790 chr4:15063789 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16738 0 0 0 0 2 CPEB2 chr4:15063703 3'AG 15063703 Downstream 87bp 15928 chr4 15063789 15063789 1 + G T STAD 15063790 + 15063770 15063810 41 TGAGCTAAAATACCCAAAAGGTGCTGGGCGAGTTGCTTTCT TGAGCTAAAATACCCAAAATGTGCTGGGCGAGTTGCTTTCT < 41bp 0.472064483701612 0.77869112099594 NA NA prediction 0.557382241991879 Functional Gain - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15063790 chr4:15063789 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16738 0 0 0 0 2 CPEB2 chr4:15063884 5'GT 15063884 Upstream 96bp 15929 chr1 93575797 93575797 1 + G T UCEC 93575798 + 93575778 93575818 41 TCTAAACAGAGACTCTACAGGGGCAGGTAATTCACTGGTCC TCTAAACAGAGACTCTACATGGGCAGGTAATTCACTGGTCC < 41bp 0.478579841402679 0.778687874994063 NA NA prediction 0.557375749988125 Functional Gain - MTF2 ENSG00000143033 CDS Human protein_coding chr1:93575798 chr1:93575797 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_16740 0 0 1 0 1 MTF2 chr1:93575803 5'GT 93575803 Upstream 7bp 15930 chr9 104313026 104313026 1 + G T LUSC 104313027 + 104313007 104313047 41 GGCTCGGACCCTGCTTCATGGCACCAGAGGAACCCACCAGC GGCTCGGACCCTGCTTCATTGCACCAGAGGAACCCACCAGC < 41bp 0.584344947119202 0.863027822027041 NA NA prediction 0.557365749815678 Functional Gain - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104313027 chr9:104313026 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16741 0 0 1 0 1 RNF20 chr9:104313067 5'GT 104313067 Upstream 42bp 15931 chr1 87041017 87041017 1 + G T LAML 87041018 + 87040998 87041038 41 TCTGTTGAAACTTTTAGGTGGGCACTTGGGCATACAATCTT TCTGTTGAAACTTTTAGGTTGGCACTTGGGCATACAATCTT < 41bp 0.47695831470359 0.778667830924358 NA NA prediction 0.557335661848715 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87041018 chr1:87041017 synonymous SNV . 0 20 hm7G_associated_SNPs_16744 0 0 0 0 1 CLCA4 chr1:87041015 3'AG 87041015 Downstream 3bp 15932 chr9 139929131 139929131 1 + G T UCEC 139929132 + 139929112 139929152 41 GCAGTTCCTGCAGGAAGGAGGCTGTCCTGCCACGCCTGCGG GCAGTTCCTGCAGGAAGGATGCTGTCCTGCCACGCCTGCGG < 41bp 0.460849515391416 0.778658143687518 NA NA prediction 0.557316287375036 Functional Gain - C9orf139 ENSG00000180539 CDS Human antisense chr9:139929132 chr9:139929131 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_16745 0 0 0 0 1 C9orf139 chr9:139929102 3'AG 139929102 Downstream 30bp 15933 chr2 239307488 239307488 1 + G T UCEC 239307489 + 239307469 239307509 41 ACAAGATCTGTGCTGTGAAGGCCAACATCCTCAAGAATGAA ACAAGATCTGTGCTGTGAATGCCAACATCCTCAAGAATGAA < 41bp 0.537561136615311 0.816207027905465 NA NA prediction 0.557291782580307 Functional Gain - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239307489 chr2:239307488 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_16746 0 0 0 0 1 TRAF3IP1 chr2:239307395 3'AG 239307395 Downstream 94bp 15934 chr1 162470029 162470029 1 + G T UCEC 162470030 + 162470010 162470050 41 TGGACTTAGCTTCAAAGAAGGCAATCAGGTAAGAAATAACC TGGACTTAGCTTCAAAGAATGCAATCAGGTAAGAAATAACC < 41bp 0.526581572063243 0.805224749626614 NA NA prediction 0.557286355126742 Functional Gain - UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162470030 chr1:162470029 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16749 0 0 1 0 1 UHMK1 chr1:162470037 5'GT 162470037 Upstream 9bp 15935 chr9 34490074 34490074 1 + G T UCEC 34490075 + 34490055 34490095 41 AAGAAGACGAAGAGCCCAAGGAGTTAGAAACTGAGCCTGGG AAGAAGACGAAGAGCCCAATGAGTTAGAAACTGAGCCTGGG < 41bp 0.568578395981657 0.847204241341569 NA NA prediction 0.557251690719823 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34490075 chr9:34490074 nonsynonymous SNV 0.406 0 20 hm7G_associated_SNPs_16750 0 0 0 0 2 DNAI1 chr9:34490010 3'AG 34490010 Downstream 65bp 15936 chr9 34490074 34490074 1 + G T UCEC 34490075 + 34490055 34490095 41 AAGAAGACGAAGAGCCCAAGGAGTTAGAAACTGAGCCTGGG AAGAAGACGAAGAGCCCAATGAGTTAGAAACTGAGCCTGGG < 41bp 0.568578395981657 0.847204241341569 NA NA prediction 0.557251690719823 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34490075 chr9:34490074 nonsynonymous SNV 0.406 0 20 hm7G_associated_SNPs_16750 0 0 0 0 2 DNAI1 chr9:34490122 5'GT 34490122 Upstream 49bp 15937 chr16 81388072 81388072 1 + G T THCA 81388073 + 81388053 81388093 41 CTGACCTGCTGCTACTGACGGACCTTAAAACCCTGTGCTGT CTGACCTGCTGCTACTGACTGACCTTAAAACCCTGTGCTGT < 41bp 0.554108679414262 0.83273308530403 NA NA prediction 0.557248811779536 Functional Gain - GAN ENSG00000261609 CDS Human protein_coding chr16:81388073 chr16:81388072 synonymous SNV . 0 20 hm7G_associated_SNPs_16751 0 0 0 0 1 GAN chr16:81388010 3'AG 81388010 Downstream 63bp 15938 chr8 36673198 36673198 1 + G T COAD 36673199 + 36673179 36673219 41 TTCCTATGAAGCACTCAAAGGAAAGAAGTAAGTAGTGTTTT TTCCTATGAAGCACTCAAATGAAAGAAGTAAGTAGTGTTTT < 41bp 0.487258719600733 0.778618060014011 NA NA prediction 0.557236120028022 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36673199 chr8:36673198 stopgain 0.332 0 20 hm7G_associated_SNPs_16752 0 0 0 0 2 KCNU1 chr8:36673114 3'AG 36673114 Downstream 85bp 15939 chr8 36673198 36673198 1 + G T COAD 36673199 + 36673179 36673219 41 TTCCTATGAAGCACTCAAAGGAAAGAAGTAAGTAGTGTTTT TTCCTATGAAGCACTCAAATGAAAGAAGTAAGTAGTGTTTT < 41bp 0.487258719600733 0.778618060014011 NA NA prediction 0.557236120028022 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36673199 chr8:36673198 stopgain 0.332 0 20 hm7G_associated_SNPs_16752 0 0 0 0 2 KCNU1 chr8:36673205 5'GT 36673205 Upstream 8bp 15940 chrX 152960559 152960559 1 + G T THCA 152960560 + 152960540 152960580 41 CCTGACCCAGCCCATCTGGGGCCTCCACCACTTGGAGTACC CCTGACCCAGCCCATCTGGTGCCTCCACCACTTGGAGTACC < 41bp 0.461556194065631 0.778611659691605 NA NA prediction 0.55722331938321 Functional Gain - SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152960560 chrX:152960559 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16753 0 0 1 0 1 SLC6A8 chrX:152960529 3'AG 152960529 Downstream 31bp 15941 chr9 128122880 128122880 1 + G T LIHC 128122881 + 128122861 128122901 41 AGTGCTTATAAAACCCCCCGGGACAAAGTGCAGTGCATCCT AGTGCTTATAAAACCCCCCTGGACAAAGTGCAGTGCATCCT < 41bp 0.558449412301482 0.837057053367672 NA NA prediction 0.557215282132379 Functional Gain - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128122881 chr9:128122880 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_16754 0 0 1 0 1 GAPVD1 chr9:128122807 3'AG 128122807 Downstream 74bp 15942 chr4 158256972 158256972 1 + G T LUSC 158256973 + 158256953 158256993 41 TTGGTGATGGCAAGTATGGGGCCAGGGATGCAGACACGAAA TTGGTGATGGCAAGTATGGTGCCAGGGATGCAGACACGAAA < 41bp 0.546736781054515 0.825339032764021 NA NA prediction 0.557204503419012 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158256973 chr4:158256972 synonymous SNV . 0 20 hm7G_associated_SNPs_16755 0 0 1 2 1 GRIA2 chr4:158257029 5'GT 158257029 Upstream 58bp 15943 chr11 108712134 108712134 1 + G T UCEC 108712135 + 108712115 108712155 41 TCAACTTACATAAAGCAAAGGAAAGACTTCAGGAAGAGGAC TCAACTTACATAAAGCAAATGAAAGACTTCAGGAAGAGGAC < 41bp 0.541492242371248 0.820082930429561 NA NA prediction 0.557181376116627 Functional Gain - DDX10 ENSG00000178105 CDS Human protein_coding chr11:108712135 chr11:108712134 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_16756 0 0 1 0 2 DDX10 chr11:108712042 3'AG 108712042 Downstream 93bp 15944 chr11 108712134 108712134 1 + G T UCEC 108712135 + 108712115 108712155 41 TCAACTTACATAAAGCAAAGGAAAGACTTCAGGAAGAGGAC TCAACTTACATAAAGCAAATGAAAGACTTCAGGAAGAGGAC < 41bp 0.541492242371248 0.820082930429561 NA NA prediction 0.557181376116627 Functional Gain - DDX10 ENSG00000178105 CDS Human protein_coding chr11:108712135 chr11:108712134 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_16756 0 0 1 0 2 DDX10 chr11:108712203 5'GT 108712203 Upstream 70bp 15945 chr4 48844691 48844691 1 + G T PAAD 48844692 + 48844672 48844712 41 AAGTATGTTGATTACTCAAGGATTAATTAGTAAAGGTAAAT AAGTATGTTGATTACTCAATGATTAATTAGTAAAGGTAAAT < 41bp 0.538122696682823 0.816683465492186 NA NA prediction 0.557121537618727 Functional Gain - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48844692 chr4:48844691 stopgain 1.000 0 20 hm7G_associated_SNPs_16758 0 0 1 0 2 OCIAD1 chr4:48844653 3'AG 48844653 Downstream 39bp 15946 chr4 48844691 48844691 1 + G T PAAD 48844692 + 48844672 48844712 41 AAGTATGTTGATTACTCAAGGATTAATTAGTAAAGGTAAAT AAGTATGTTGATTACTCAATGATTAATTAGTAAAGGTAAAT < 41bp 0.538122696682823 0.816683465492186 NA NA prediction 0.557121537618727 Functional Gain - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48844692 chr4:48844691 stopgain 1.000 0 20 hm7G_associated_SNPs_16758 0 0 1 0 2 OCIAD1 chr4:48844706 5'GT 48844706 Upstream 16bp 15947 chr22 24919601 24919601 1 + G T UCEC 24919602 + 24919582 24919622 41 TAAAGCTCACCAGGACTTTGGCTACTTTTATGGCTCGAGCT TAAAGCTCACCAGGACTTTTGCTACTTTTATGGCTCGAGCT < 41bp 0.577128351808853 0.855680605325149 NA NA prediction 0.557104507032594 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919602 chr22:24919601 nonsynonymous SNV 0.953 5 20 hm7G_associated_SNPs_16763 0 0 0 0 1 UPB1 chr22:24919587 3'AG 24919587 Downstream 15bp 15948 chr2 113950126 113950126 1 + G T LUSC 113950127 + 113950107 113950147 41 ACGCCTCTATCGCCTGGAGGGCTTCCGGAAGTCTGAAGTGG ACGCCTCTATCGCCTGGAGTGCTTCCGGAAGTCTGAAGTGG < 41bp 0.58732319867635 0.865868278664882 NA NA prediction 0.557090159977064 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950127 chr2:113950126 nonsynonymous SNV 0.335 4 20 hm7G_associated_SNPs_16764 0 0 1 0 1 PSD4 chr2:113950166 5'GT 113950166 Upstream 41bp 15949 chr22 18650695 18650695 1 + G T UCEC 18650696 + 18650676 18650716 41 TGTATACGATCCGGGTGAAGGACTCCTTGATTTGCGTTGAC TGTATACGATCCGGGTGAATGACTCCTTGATTTGCGTTGAC < 41bp 0.456103940415018 0.778541156148915 NA NA prediction 0.55708231229783 Functional Gain - USP18 ENSG00000184979 CDS Human protein_coding chr22:18650696 chr22:18650695 nonsynonymous SNV 0.049 0 20 hm7G_associated_SNPs_16765 0 0 1 0 1 USP18 chr22:18650657 3'AG 18650657 Downstream 39bp 15950 chr7 123269456 123269456 1 + G T STAD 123269457 + 123269437 123269477 41 ACAGGAAGAGGTGCTGCCAGGATGGACATCTTGTGTAATAA ACAGGAAGAGGTGCTGCCATGATGGACATCTTGTGTAATAA < 41bp 0.551321405538236 0.82986127390197 NA NA prediction 0.557079736727468 Functional Gain - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123269457 chr7:123269456 stopgain 0.998 1 20 hm7G_associated_SNPs_16766 0 0 0 0 1 ASB15 chr7:123269488 5'GT 123269488 Upstream 33bp 15951 chr11 68707074 68707074 1 + G T LUAD 68707075 + 68707055 68707095 41 GGAAGGGGTCCTCTATGCCGGCAGCGGGACCAAGAACGGAT GGAAGGGGTCCTCTATGCCTGCAGCGGGACCAAGAACGGAT < 41bp 0.562662950381749 0.841201730912454 NA NA prediction 0.557077561061411 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68707075 chr11:68707074 nonsynonymous SNV 0.644 5 20 hm7G_associated_SNPs_16767 0 0 0 0 1 IGHMBP2 chr11:68707002 3'AG 68707002 Downstream 73bp 15952 chr11 9534051 9534051 1 + G T SARC 9534052 + 9534032 9534072 41 GTATGTTACAGGTGTAGAAGGGGACGACGTTGTTTCTACAC GTATGTTACAGGTGTAGAATGGGACGACGTTGTTTCTACAC < 41bp 0.56594888410768 0.844481661137289 NA NA prediction 0.557065554059218 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9534052 chr11:9534051 nonsynonymous SNV 0.964 4 20 hm7G_associated_SNPs_16768 0 0 1 0 2 ZNF143 chr11:9533995 3'AG 9533995 Downstream 57bp 15953 chr11 9534051 9534051 1 + G T SARC 9534052 + 9534032 9534072 41 GTATGTTACAGGTGTAGAAGGGGACGACGTTGTTTCTACAC GTATGTTACAGGTGTAGAATGGGACGACGTTGTTTCTACAC < 41bp 0.56594888410768 0.844481661137289 NA NA prediction 0.557065554059218 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9534052 chr11:9534051 nonsynonymous SNV 0.964 4 20 hm7G_associated_SNPs_16768 0 0 1 0 2 ZNF143 chr11:9534143 5'GT 9534143 Upstream 93bp 15954 chrY 6948851 6948851 1 + G T SARC 6948852 + 6948832 6948872 41 ATGTGTATCCATGTGTGCAGGCTCGGCTGTGACCACCCAGT ATGTGTATCCATGTGTGCATGCTCGGCTGTGACCACCCAGT < 41bp 0.571405554194874 0.849937409568303 NA NA prediction 0.557063710746857 Functional Gain - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6948852 chrY:6948851 nonsynonymous SNV 0.936 1 20 hm7G_associated_SNPs_16769 0 0 0 0 2 TBL1Y chrY:6948773 3'AG 6948773 Downstream 79bp 15955 chrY 6948851 6948851 1 + G T SARC 6948852 + 6948832 6948872 41 ATGTGTATCCATGTGTGCAGGCTCGGCTGTGACCACCCAGT ATGTGTATCCATGTGTGCATGCTCGGCTGTGACCACCCAGT < 41bp 0.571405554194874 0.849937409568303 NA NA prediction 0.557063710746857 Functional Gain - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6948852 chrY:6948851 nonsynonymous SNV 0.936 1 20 hm7G_associated_SNPs_16769 0 0 0 0 2 TBL1Y chrY:6948894 5'GT 6948894 Upstream 44bp 15956 chr2 44527136 44527136 1 + G T STAD 44527137 + 44527117 44527157 41 TACGGTTCTGGCTCACAAAGGGTGTTGATGGTTTTAGTTTG TACGGTTCTGGCTCACAAATGGTGTTGATGGTTTTAGTTTG < 41bp 0.469728798883319 0.778523353130773 NA NA prediction 0.557046706261545 Functional Gain - SLC3A1 ENSG00000138079 CDS Human protein_coding chr2:44527137 chr2:44527136 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_16770 0 0 0 0 2 SLC3A1 chr2:44527110 3'AG 44527110 Downstream 27bp 15957 chr2 44527136 44527136 1 + G T STAD 44527137 + 44527117 44527157 41 TACGGTTCTGGCTCACAAAGGGTGTTGATGGTTTTAGTTTG TACGGTTCTGGCTCACAAATGGTGTTGATGGTTTTAGTTTG < 41bp 0.469728798883319 0.778523353130773 NA NA prediction 0.557046706261545 Functional Gain - SLC3A1 ENSG00000138079 CDS Human protein_coding chr2:44527137 chr2:44527136 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_16770 0 0 0 0 2 SLC3A1 chr2:44527229 5'GT 44527229 Upstream 94bp 15958 chr20 31622902 31622902 1 + G T LUSC 31622903 + 31622883 31622923 41 CTAGCATGCTCCCCAAGATGGTCAACAAGTTCCTGGACAGC CTAGCATGCTCCCCAAGATTGTCAACAAGTTCCTGGACAGC < 41bp 0.456702647720546 0.778516837513022 NA NA prediction 0.557033675026045 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31622903 chr20:31622902 nonsynonymous SNV 0.706 0 20 hm7G_associated_SNPs_16771 0 0 0 0 2 BPIFB6 chr20:31622887 3'AG 31622887 Downstream 16bp 15959 chr20 31622902 31622902 1 + G T LUSC 31622903 + 31622883 31622923 41 CTAGCATGCTCCCCAAGATGGTCAACAAGTTCCTGGACAGC CTAGCATGCTCCCCAAGATTGTCAACAAGTTCCTGGACAGC < 41bp 0.456702647720546 0.778516837513022 NA NA prediction 0.557033675026045 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31622903 chr20:31622902 nonsynonymous SNV 0.706 0 20 hm7G_associated_SNPs_16771 0 0 0 0 2 BPIFB6 chr20:31622950 5'GT 31622950 Upstream 49bp 15960 chr20 17705785 17705785 1 + G T UCEC 17705786 + 17705766 17705806 41 GATCAATTTGGTCACCAAAGGTATCAATAAGGTAATTCATA GATCAATTTGGTCACCAAATGTATCAATAAGGTAATTCATA < 41bp 0.538564312583496 0.817070941987014 NA NA prediction 0.557013258807038 Functional Gain - BANF2 ENSG00000125888 CDS Human protein_coding chr20:17705786 chr20:17705785 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16772 0 0 0 0 1 BANF2 chr20:17705796 5'GT 17705796 Upstream 12bp 15961 chr20 19970897 19970897 1 + G T UCEC 19970898 + 19970878 19970918 41 TGTATTCGCCGGAAAAGAAGGTCATGCTGCTGCTGCGGGTC TGTATTCGCCGGAAAAGAATGTCATGCTGCTGCTGCGGGTC < 41bp 0.56921510871486 0.847715883434893 NA NA prediction 0.557001549440067 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19970898 chr20:19970897 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16773 0 0 0 0 1 RIN2 chr20:19970955 5'GT 19970955 Upstream 59bp 15962 chr11 124749437 124749437 1 + G T LUSC 124749438 + 124749418 124749458 41 GATTCCGGAAGAAACCCAAGGCTCTTCCCTACAGGAGGGAG GATTCCGGAAGAAACCCAATGCTCTTCCCTACAGGAGGGAG < 41bp 0.442231787871943 0.778499951313113 NA NA prediction 0.556999902626225 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124749438 chr11:124749437 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16774 0 0 0 0 2 ROBO3 chr11:124749361 3'AG 124749361 Downstream 77bp 15963 chr11 124749437 124749437 1 + G T LUSC 124749438 + 124749418 124749458 41 GATTCCGGAAGAAACCCAAGGCTCTTCCCTACAGGAGGGAG GATTCCGGAAGAAACCCAATGCTCTTCCCTACAGGAGGGAG < 41bp 0.442231787871943 0.778499951313113 NA NA prediction 0.556999902626225 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124749438 chr11:124749437 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16774 0 0 0 0 2 ROBO3 chr11:124749471 5'GT 124749471 Upstream 35bp 15964 chr3 185341845 185341845 1 + G T LUSC 185341846 + 185341826 185341866 41 GATCTGAATCTTTTAGAGTGGACCCATCACAGCATGAAACC GATCTGAATCTTTTAGAGTTGACCCATCACAGCATGAAACC < 41bp 0.461464035453932 0.77849668277475 NA NA prediction 0.556993365549499 Functional Gain - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185341846 chr3:185341845 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16776 0 0 1 0 2 SENP2 chr3:185341786 3'AG 185341786 Downstream 60bp 15965 chr3 185341845 185341845 1 + G T LUSC 185341846 + 185341826 185341866 41 GATCTGAATCTTTTAGAGTGGACCCATCACAGCATGAAACC GATCTGAATCTTTTAGAGTTGACCCATCACAGCATGAAACC < 41bp 0.461464035453932 0.77849668277475 NA NA prediction 0.556993365549499 Functional Gain - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185341846 chr3:185341845 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_16776 0 0 1 0 2 SENP2 chr3:185341870 5'GT 185341870 Upstream 26bp 15966 chr4 145633212 145633212 1 + G T LUSC 145633213 + 145633193 145633233 41 ATTCTACAGATAATAAAGGGGAAAGATTATGGTATGTAGAG ATTCTACAGATAATAAAGGTGAAAGATTATGGTATGTAGAG < 41bp 0.474313343104475 0.778480345654245 NA NA prediction 0.55696069130849 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145633213 chr4:145633212 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16777 0 0 0 0 1 HHIP chr4:145633223 5'GT 145633223 Upstream 12bp 15967 chr20 57875877 57875877 1 + G T CESC 57875878 + 57875858 57875898 41 ATCTAGGTTCATGGAGCCGGGGCTGTGGCTCCTTTTCGGGC ATCTAGGTTCATGGAGCCGTGGCTGTGGCTCCTTTTCGGGC < 41bp 0.464021814887995 0.778474912189772 NA NA prediction 0.556949824379544 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57875878 chr20:57875877 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16779 0 0 0 0 1 EDN3 chr20:57875919 5'GT 57875919 Upstream 43bp 15968 chr17 39978534 39978534 1 + G T UCEC 39978535 + 39978515 39978555 41 GACGCCTCATGCCTGGGCAGGACCCTGAGAAAACCATAGGA GACGCCTCATGCCTGGGCATGACCCTGAGAAAACCATAGGA < 41bp 0.5445740716682 0.823041665488595 NA NA prediction 0.556935187640791 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39978535 chr17:39978534 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_16782 0 0 1 0 1 FKBP10 chr17:39978475 3'AG 39978475 Downstream 60bp 15969 chr17 40705586 40705586 1 + G T COAD 40705587 + 40705567 40705607 41 TTCCTGCCAGACATGAAGAGGCGCGGTTCGGGACGCGTGTT TTCCTGCCAGACATGAAGATGCGCGGTTCGGGACGCGTGTT < 41bp 0.575454007156191 0.853914703935993 NA NA prediction 0.556921393559604 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40705587 chr17:40705586 nonsynonymous SNV 0.030 4 20 hm7G_associated_SNPs_16783 0 0 0 0 1 HSD17B1 chr17:40705636 5'GT 40705636 Upstream 51bp 15970 chr10 74671483 74671483 1 + G T PAAD 74671484 + 74671464 74671504 41 TTCTACTGCAGACGTTGAAGGATGCCACAATAACAATGGTG TTCTACTGCAGACGTTGAATGATGCCACAATAACAATGGTG < 41bp 0.559113677615379 0.837561897437725 NA NA prediction 0.556896439644692 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74671484 chr10:74671483 stopgain 1.000 1 20 hm7G_associated_SNPs_16785 0 0 0 0 1 OIT3 chr10:74671475 3'AG 74671475 Downstream 9bp 15971 chr3 115395384 115395384 1 + G T UCEC 115395385 + 115395365 115395405 41 CCACCACCCCTGCCGCAGAGGATGCTGCTGCCAAGGCAACA CCACCACCCCTGCCGCAGATGATGCTGCTGCCAAGGCAACA < 41bp 0.56885564020881 0.847294840863535 NA NA prediction 0.556878401309449 Functional Gain - GAP43 ENSG00000172020 CDS Human protein_coding chr3:115395385 chr3:115395384 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16786 0 0 0 0 1 GAP43 chr3:115395457 5'GT 115395457 Upstream 74bp 15972 chr9 140128604 140128604 1 + G T COAD 140128605 + 140128585 140128625 41 AGCTCACGGACCTGGCCGTGGGCTGCATCCTGCTGGCCGGC AGCTCACGGACCTGGCCGTTGGCTGCATCCTGCTGGCCGGC < 41bp 0.449564175649906 0.778393077617805 NA NA prediction 0.556786155235611 Functional Gain - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140128605 chr9:140128604 synonymous SNV . 0 20 hm7G_associated_SNPs_16792 0 0 0 0 1 SLC34A3 chr9:140128561 3'AG 140128561 Downstream 44bp 15973 chr6 168431453 168431453 1 + G T BLCA 168431454 + 168431434 168431474 41 TTTTCACTTTGTCTCTCAGGGTTTATGGTCCAGCAGAGTCT TTTTCACTTTGTCTCTCAGTGTTTATGGTCCAGCAGAGTCT < 41bp 0.551656956315087 0.830036212769731 NA NA prediction 0.556758512909288 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168431454 chr6:168431453 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_16793 0 0 0 0 2 KIF25 chr6:168431453 5'GT 168431453 Upstream 1bp 15974 chr6 168431453 168431453 1 + G T BLCA 168431454 + 168431434 168431474 41 TTTTCACTTTGTCTCTCAGGGTTTATGGTCCAGCAGAGTCT TTTTCACTTTGTCTCTCAGTGTTTATGGTCCAGCAGAGTCT < 41bp 0.551656956315087 0.830036212769731 NA NA prediction 0.556758512909288 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168431454 chr6:168431453 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_16793 0 0 0 0 2 KIF25 chr6:168431527 5'GT 168431527 Upstream 75bp 15975 chr9 127220495 127220495 1 + G T COAD 127220496 + 127220476 127220516 41 AGGCCCCTGCCAGCTCAGAGGAGGCAAACAGGGTGCAGAGG AGGCCCCTGCCAGCTCAGATGAGGCAAACAGGGTGCAGAGG < 41bp 0.449025047243891 0.778370956516558 NA NA prediction 0.556741913033116 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127220496 chr9:127220495 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_16794 0 0 0 0 1 PSMB7;NR5A1 chr9:127220515 5'GT 127220515 Upstream 21bp 15976 chr16 67917919 67917919 1 + G T ESCA 67917920 + 67917900 67917940 41 CCATCACTCGGGACCACATGGGCTCCGTTATGGCCCAGGTG CCATCACTCGGGACCACATTGGCTCCGTTATGGCCCAGGTG < 41bp 0.577091329550015 0.855449858037554 NA NA prediction 0.556717056975079 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917920 chr16:67917919 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16797 0 0 1 0 1 EDC4 chr16:67917859 3'AG 67917859 Downstream 61bp 15977 chr19 5686433 5686433 1 + G T UCEC 5686434 + 5686414 5686454 41 TGGCCCCCCCCAGGTGGTAGGGAACTGCCGGAAGCTGGGCG TGGCCCCCCCCAGGTGGTATGGAACTGCCGGAAGCTGGGCG < 41bp 0.570551636564754 0.84890187958371 NA NA prediction 0.556700486037913 Functional Gain - HSD11B1L ENSG00000167733 CDS Human protein_coding chr19:5686434 chr19:5686433 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16799 0 0 0 0 1 HSD11B1L chr19:5686427 3'AG 5686427 Downstream 7bp 15978 chr9 117405419 117405419 1 + G T UCEC 117405420 + 117405400 117405440 41 CCTGCCTCTTCTAGGAAATGGCCCGCCAGCTGCTGGCAGTG CCTGCCTCTTCTAGGAAATTGCCCGCCAGCTGCTGGCAGTG < 41bp 0.460981416049165 0.778346614577043 NA NA prediction 0.556693229154086 Functional Gain - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117405420 chr9:117405419 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_16800 0 0 1 0 1 TMEM268 chr9:117405414 3'AG 117405414 Downstream 6bp 15979 chr5 131598344 131598344 1 + G T UCEC 131598345 + 131598325 131598365 41 ATTGGCTGCCCTGTGCCCAGGAGACCTGATCCAGGCCATCA ATTGGCTGCCCTGTGCCCATGAGACCTGATCCAGGCCATCA < 41bp 0.579658238593761 0.857999802791141 NA NA prediction 0.55668312839476 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131598345 chr5:131598344 stopgain 0.997 1 20 hm7G_associated_SNPs_16801 0 0 1 0 1 PDLIM4 chr5:131598302 3'AG 131598302 Downstream 43bp 15980 chr3 195410718 195410718 1 + G T COAD 195410719 + 195410699 195410739 41 AGCACACCCTGTCCTATGTGGACGTCGGCACTGGGAAGGTC AGCACACCCTGTCCTATGTTGACGTCGGCACTGGGAAGGTC < 41bp 0.537985529254996 0.816310701727451 NA NA prediction 0.556650344944909 Functional Gain - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195410719 chr3:195410718 . . 0 20 hm7G_associated_SNPs_16803 0 0 1 1 2 SDHAP2 chr3:195410623 3'AG 195410623 Downstream 96bp 15981 chr3 195410718 195410718 1 + G T COAD 195410719 + 195410699 195410739 41 AGCACACCCTGTCCTATGTGGACGTCGGCACTGGGAAGGTC AGCACACCCTGTCCTATGTTGACGTCGGCACTGGGAAGGTC < 41bp 0.537985529254996 0.816310701727451 NA NA prediction 0.556650344944909 Functional Gain - SDHAP2 ENSG00000215837;ENSG00000242086 ncRNA_exonic Human other chr3:195410719 chr3:195410718 . . 0 20 hm7G_associated_SNPs_16803 0 0 1 1 2 SDHAP2 chr3:195410736 5'GT 195410736 Upstream 19bp 15982 chr11 65743940 65743940 1 + G T UCEC 65743941 + 65743921 65743961 41 AGGATCCCGAGCGGAAGGGGGCCATCGTGTTCAACGCCACG AGGATCCCGAGCGGAAGGGTGCCATCGTGTTCAACGCCACG < 41bp 0.440661663245918 0.778317855188102 NA NA prediction 0.556635710376204 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65743941 chr11:65743940 synonymous SNV . 0 20 hm7G_associated_SNPs_16806 0 0 1 0 2 SART1 chr11:65743866 3'AG 65743866 Downstream 75bp 15983 chr11 65743940 65743940 1 + G T UCEC 65743941 + 65743921 65743961 41 AGGATCCCGAGCGGAAGGGGGCCATCGTGTTCAACGCCACG AGGATCCCGAGCGGAAGGGTGCCATCGTGTTCAACGCCACG < 41bp 0.440661663245918 0.778317855188102 NA NA prediction 0.556635710376204 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65743941 chr11:65743940 synonymous SNV . 0 20 hm7G_associated_SNPs_16806 0 0 1 0 2 SART1 chr11:65744039 5'GT 65744039 Upstream 100bp 15984 chr3 170099052 170099052 1 + G T GBM 170099053 + 170099033 170099073 41 CAGATGCACCATCAGGAATGGAATTACAGTCATGGTATCCT CAGATGCACCATCAGGAATTGAATTACAGTCATGGTATCCT < 41bp 0.471818537124303 0.778317252757364 NA NA prediction 0.556634505514729 Functional Gain - SKIL ENSG00000136603 CDS Human protein_coding chr3:170099053 chr3:170099052 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_16808 0 0 1 0 2 SKIL chr3:170099032 3'AG 170099032 Downstream 21bp 15985 chr3 170099052 170099052 1 + G T GBM 170099053 + 170099033 170099073 41 CAGATGCACCATCAGGAATGGAATTACAGTCATGGTATCCT CAGATGCACCATCAGGAATTGAATTACAGTCATGGTATCCT < 41bp 0.471818537124303 0.778317252757364 NA NA prediction 0.556634505514729 Functional Gain - SKIL ENSG00000136603 CDS Human protein_coding chr3:170099053 chr3:170099052 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_16808 0 0 1 0 2 SKIL chr3:170099129 5'GT 170099129 Upstream 78bp 15986 chr11 71940730 71940730 1 + G T UCEC 71940731 + 71940711 71940751 41 TGCCACAGACAGGGGAGCAGGAACTAGAGAGCCTGGTGCTG TGCCACAGACAGGGGAGCATGAACTAGAGAGCCTGGTGCTG < 41bp 0.572293966119226 0.850610465430076 NA NA prediction 0.556632998621701 Functional Gain - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71940731 chr11:71940730 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16809 0 0 1 0 2 INPPL1 chr11:71940707 3'AG 71940707 Downstream 24bp 15987 chr11 71940730 71940730 1 + G T UCEC 71940731 + 71940711 71940751 41 TGCCACAGACAGGGGAGCAGGAACTAGAGAGCCTGGTGCTG TGCCACAGACAGGGGAGCATGAACTAGAGAGCCTGGTGCTG < 41bp 0.572293966119226 0.850610465430076 NA NA prediction 0.556632998621701 Functional Gain - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71940731 chr11:71940730 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16809 0 0 1 0 2 INPPL1 chr11:71940796 5'GT 71940796 Upstream 67bp 15988 chr1 162724626 162724626 1 + G T OV 162724627 + 162724607 162724647 41 ACTCGCTGGATCTCTTGGCGGAACCGTCATGGGAAACAGGT ACTCGCTGGATCTCTTGGCTGAACCGTCATGGGAAACAGGT < 41bp 0.569708160957252 0.848022767335009 NA NA prediction 0.556629212755514 Functional Gain - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162724627 chr1:162724626 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16811 0 0 1 0 1 DDR2 chr1:162724645 5'GT 162724645 Upstream 20bp 15989 chr6 7862703 7862703 1 + G T UCEC 7862704 + 7862684 7862724 41 ATCGCTCTACCCAGTCCCAGGACGTGGCGCGGGTCTCCAGT ATCGCTCTACCCAGTCCCATGACGTGGCGCGGGTCTCCAGT < 41bp 0.57929764743765 0.857612070408298 NA NA prediction 0.556628845941297 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862704 chr6:7862703 nonsynonymous SNV 0.966 1 20 hm7G_associated_SNPs_16812 0 0 0 0 1 BMP6 chr6:7862731 5'GT 7862731 Upstream 29bp 15990 chr10 6262674 6262674 1 + G T LUAD 6262675 + 6262655 6262695 41 CGGAGGTTCCTGGTGAACCGGGTGCAGGACCACATCCAGAG CGGAGGTTCCTGGTGAACCTGGTGCAGGACCACATCCAGAG < 41bp 0.582923192260376 0.861227925252484 NA NA prediction 0.556609465984216 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262675 chr10:6262674 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_16813 0 0 1 0 1 PFKFB3 chr10:6262621 3'AG 6262621 Downstream 54bp 15991 chr20 62292680 62292680 1 + G T SARC 62292681 + 62292661 62292701 41 GCATCCTGGAGAGCCCTACGGGTACAGGGAAGACGCTGTGC GCATCCTGGAGAGCCCTACTGGTACAGGGAAGACGCTGTGC < 41bp 0.586414391711725 0.864712195161526 NA NA prediction 0.556595606899602 Functional Gain - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62292681 chr20:62292680 synonymous SNV . 0 20 hm7G_associated_SNPs_16814 0 0 1 3 1 RTEL1 chr20:62292651 3'AG 62292651 Downstream 30bp 15992 chrX 37639333 37639333 1 + G T LUAD 37639334 + 37639314 37639354 41 ATTCAACCTCTGCCACCATGGGGAACTGGGCTGTGAATGAG ATTCAACCTCTGCCACCATTGGGAACTGGGCTGTGAATGAG < 41bp 0.562085926600646 0.840383443734806 NA NA prediction 0.556595034268319 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37639334 chrX:37639333 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_16815 0 0 0 0 1 CYBB chrX:37639375 5'GT 37639375 Upstream 43bp 15993 chr14 95108172 95108172 1 + G T LUAD 95108173 + 95108153 95108193 41 CAGACCCAGGGGAAGCTCGGGGCCTGGGAGAAGGACCTCGG CAGACCCAGGGGAAGCTCGTGGCCTGGGAGAAGGACCTCGG < 41bp 0.489111201304796 0.778272310822833 NA NA prediction 0.556544621645666 Functional Gain - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95108173 chr14:95108172 . . 0 20 hm7G_associated_SNPs_16818 0 0 0 0 1 SERPINA13P chr14:95108237 5'GT 95108237 Upstream 66bp 15994 chr6 84603269 84603269 1 + G T LUAD 84603270 + 84603250 84603290 41 ATAATGTCAGCCCTTATATGGAGTATCATCCTGGTGGAGAA ATAATGTCAGCCCTTATATTGAGTATCATCCTGGTGGAGAA < 41bp 0.463336244774453 0.778260266115446 NA NA prediction 0.556520532230892 Functional Gain - CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84603270 chr6:84603269 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_16820 0 0 1 0 2 CYB5R4 chr6:84603241 3'AG 84603241 Downstream 29bp 15995 chr6 84603269 84603269 1 + G T LUAD 84603270 + 84603250 84603290 41 ATAATGTCAGCCCTTATATGGAGTATCATCCTGGTGGAGAA ATAATGTCAGCCCTTATATTGAGTATCATCCTGGTGGAGAA < 41bp 0.463336244774453 0.778260266115446 NA NA prediction 0.556520532230892 Functional Gain - CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84603270 chr6:84603269 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_16820 0 0 1 0 2 CYB5R4 chr6:84603341 5'GT 84603341 Upstream 73bp 15996 chr4 68459032 68459032 1 + G T UCEC 68459033 + 68459013 68459053 41 TTTTGTGAAGGAGACTCGAGGAAATTTAAGACCATTTATAT TTTTGTGAAGGAGACTCGATGAAATTTAAGACCATTTATAT < 41bp 0.498334987329303 0.778252137872534 NA NA prediction 0.556504275745067 Functional Gain - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68459033 chr4:68459032 stopgain 1.000 1 20 hm7G_associated_SNPs_16821 0 0 0 0 2 STAP1 chr4:68458978 3'AG 68458978 Downstream 55bp 15997 chr4 68459032 68459032 1 + G T UCEC 68459033 + 68459013 68459053 41 TTTTGTGAAGGAGACTCGAGGAAATTTAAGACCATTTATAT TTTTGTGAAGGAGACTCGATGAAATTTAAGACCATTTATAT < 41bp 0.498334987329303 0.778252137872534 NA NA prediction 0.556504275745067 Functional Gain - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68459033 chr4:68459032 stopgain 1.000 1 20 hm7G_associated_SNPs_16821 0 0 0 0 2 STAP1 chr4:68459074 5'GT 68459074 Upstream 43bp 15998 chr19 55177363 55177363 1 + G T LUAD 55177364 + 55177344 55177384 41 TCCTCCAACACTGGCGTCAGGGAAAACACAGGACATTGGGT TCCTCCAACACTGGCGTCATGGAAAACACAGGACATTGGGT < 41bp 0.569750200626984 0.847996024779683 NA NA prediction 0.556491648305396 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177364 chr19:55177363 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_16822 0 0 0 0 2 LILRB4 chr19:55177266 3'AG 55177266 Downstream 98bp 15999 chr19 55177363 55177363 1 + G T LUAD 55177364 + 55177344 55177384 41 TCCTCCAACACTGGCGTCAGGGAAAACACAGGACATTGGGT TCCTCCAACACTGGCGTCATGGAAAACACAGGACATTGGGT < 41bp 0.569750200626984 0.847996024779683 NA NA prediction 0.556491648305396 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177364 chr19:55177363 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_16822 0 0 0 0 2 LILRB4 chr19:55177382 5'GT 55177382 Upstream 20bp 16000 chr6 28327678 28327678 1 + G T LUAD 28327679 + 28327659 28327699 41 CGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAG CGGGGAATCTGCAGAGCTGTGTGCGGGAGCAGCATCCAGAG < 41bp 0.45442749354344 0.778228646558623 NA NA prediction 0.556457293117246 Functional Gain - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28327679 chr6:28327678 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_16825 0 0 0 0 1 ZKSCAN3 chr6:28327765 5'GT 28327765 Upstream 88bp 16001 chr4 111470910 111470910 1 + G T HNSC 111470911 + 111470891 111470931 41 CTTCTGGTGTATCGGTATGGGATGCAGAACTCTGGCAATGA CTTCTGGTGTATCGGTATGTGATGCAGAACTCTGGCAATGA < 41bp 0.480488489717608 0.778208622942769 NA NA prediction 0.556417245885539 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111470911 chr4:111470910 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_16828 0 0 1 0 1 ENPEP chr4:111470872 3'AG 111470872 Downstream 39bp 16002 chr16 1398450 1398450 1 + G T UCEC 1398451 + 1398431 1398471 41 AGTTCGTGAAGAAACTCAAGGAGCTGGAGAAGTGCATGGAG AGTTCGTGAAGAAACTCAATGAGCTGGAGAAGTGCATGGAG < 41bp 0.552735502462625 0.830916927844224 NA NA prediction 0.556362850763197 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1398451 chr16:1398450 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_16831 0 0 0 0 1 BAIAP3 chr16:1398380 3'AG 1398380 Downstream 71bp 16003 chr19 41594917 41594917 1 + G T UCEC 41594918 + 41594898 41594938 41 GCGGACATGATGCCGTCAAGGAGGCTCTGGTGGACCAGGCT GCGGACATGATGCCGTCAATGAGGCTCTGGTGGACCAGGCT < 41bp 0.57968868781812 0.857863328588438 NA NA prediction 0.556349281540635 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41594918 chr19:41594917 nonsynonymous SNV 0.245 3 20 hm7G_associated_SNPs_16832 0 0 0 0 2 CYP2A13 chr19:41594834 3'AG 41594834 Downstream 84bp 16004 chr19 41594917 41594917 1 + G T UCEC 41594918 + 41594898 41594938 41 GCGGACATGATGCCGTCAAGGAGGCTCTGGTGGACCAGGCT GCGGACATGATGCCGTCAATGAGGCTCTGGTGGACCAGGCT < 41bp 0.57968868781812 0.857863328588438 NA NA prediction 0.556349281540635 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41594918 chr19:41594917 nonsynonymous SNV 0.245 3 20 hm7G_associated_SNPs_16832 0 0 0 0 2 CYP2A13 chr19:41594996 5'GT 41594996 Upstream 80bp 16005 chr11 65405596 65405596 1 + G T rs56343805 65405597 + 65405577 65405617 41 CGGCGCCGGGAGCGGTAGCGGGAGAGCGGCAGCGGGACCCC CGGCGCCGGGAGCGGTAGCTGGAGAGCGGCAGCGGGACCCC < 41bp 0.465598003613 0.778161387625002 NA NA prediction 0.556322775250005 Functional Gain - SIPA1 ENSG00000213445 UTR5 Human protein_coding chr11:65405597 chr11:65405596 . . 0 20 hm7G_associated_SNPs_16833 0 0 1 0 1 SIPA1 chr11:65405653 5'GT 65405653 Upstream 58bp 16006 chr14 74428524 74428524 1 + G T UCEC 74428525 + 74428505 74428545 41 GCTACAGACTTACTAAAAAGGCTCTATTCTACCAGTGCCTC GCTACAGACTTACTAAAAATGCTCTATTCTACCAGTGCCTC < 41bp 0.578229162459114 0.856387284572297 NA NA prediction 0.556316244226365 Functional Gain - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74428525 chr14:74428524 nonsynonymous SNV 0.869 4 20 hm7G_associated_SNPs_16835 0 0 0 0 2 COQ6 chr14:74428440 3'AG 74428440 Downstream 85bp 16007 chr14 74428524 74428524 1 + G T UCEC 74428525 + 74428505 74428545 41 GCTACAGACTTACTAAAAAGGCTCTATTCTACCAGTGCCTC GCTACAGACTTACTAAAAATGCTCTATTCTACCAGTGCCTC < 41bp 0.578229162459114 0.856387284572297 NA NA prediction 0.556316244226365 Functional Gain - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74428525 chr14:74428524 nonsynonymous SNV 0.869 4 20 hm7G_associated_SNPs_16835 0 0 0 0 2 COQ6 chr14:74428606 5'GT 74428606 Upstream 83bp 16008 chr7 130007280 130007280 1 + G T UCEC 130007281 + 130007261 130007301 41 CCCCTCAGTCGGAGCCGGAGGTGGCTGCCATAGTGAACTTC CCCCTCAGTCGGAGCCGGATGTGGCTGCCATAGTGAACTTC < 41bp 0.447852926383008 0.778143278400838 NA NA prediction 0.556286556801676 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130007281 chr7:130007280 nonsynonymous SNV 0.443 4 20 hm7G_associated_SNPs_16840 0 0 0 0 1 CPA5 chr7:130007213 3'AG 130007213 Downstream 68bp 16009 chr22 40365424 40365424 1 + G T LUAD 40365425 + 40365405 40365445 41 ATGTTTCTAGGAACGCCGAGGAGGCAGCCTTGACATAAATG ATGTTTCTAGGAACGCCGATGAGGCAGCCTTGACATAAATG < 41bp 0.452116268037411 0.778134892832413 NA NA prediction 0.556269785664825 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40365425 chr22:40365424 stopgain 0.988 0 20 hm7G_associated_SNPs_16841 0 0 1 0 1 GRAP2 chr22:40365415 3'AG 40365415 Downstream 10bp 16010 chr4 118976016 118976016 1 + G T UCEC 118976017 + 118975997 118976037 41 ATATATTTGTGGGAAAAGAGGGAACAAGAATGAACACCAAT ATATATTTGTGGGAAAAGATGGAACAAGAATGAACACCAAT < 41bp 0.541949278194577 0.820072449395244 NA NA prediction 0.556246342401334 Functional Gain - NDST3 ENSG00000164100 CDS Human protein_coding chr4:118976017 chr4:118976016 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_16843 0 0 0 0 1 NDST3 chr4:118976046 5'GT 118976046 Upstream 31bp 16011 chr2 220113188 220113188 1 + G T UCEC 220113189 + 220113169 220113209 41 TGAACTCGATGATGACCGTGGACCCGCATCAGCGTCCTCAC TGAACTCGATGATGACCGTTGACCCGCATCAGCGTCCTCAC < 41bp 0.562065119569897 0.840183530760857 NA NA prediction 0.556236822381919 Functional Gain - STK16 ENSG00000115661 CDS Human protein_coding chr2:220113189 chr2:220113188 synonymous SNV . 0 20 hm7G_associated_SNPs_16844 0 0 1 0 1 STK16 chr2:220113143 3'AG 220113143 Downstream 46bp 16012 chr3 47385112 47385112 1 + G T LUAD 47385113 + 47385093 47385133 41 ATGCTCAACAAGCGCTGCCGGCACGGAGCCGCCTCCCTGGG ATGCTCAACAAGCGCTGCCTGCACGGAGCCGCCTCCCTGGG < 41bp 0.465867277090472 0.778104662286921 NA NA prediction 0.556209324573842 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47385113 chr3:47385112 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_16845 0 0 1 0 1 KLHL18 chr3:47385045 3'AG 47385045 Downstream 68bp 16013 chr7 100087211 100087211 1 + G T HNSC 100087212 + 100087192 100087232 41 GGAGGAAGAAGAGGAGGTGGGCGCCGCGACATTTGGGGCAG GGAGGAAGAAGAGGAGGTGTGCGCCGCGACATTTGGGGCAG < 41bp 0.571742313120589 0.849843413221873 NA NA prediction 0.556202200202567 Functional Gain - NYAP1 ENSG00000166924 CDS Human protein_coding chr7:100087212 chr7:100087211 nonsynonymous SNV 0.749 3 20 hm7G_associated_SNPs_16846 0 0 0 0 1 NYAP1 chr7:100087289 5'GT 100087289 Upstream 79bp 16014 chr20 31811717 31811717 1 + G T SKCM 31811718 + 31811698 31811738 41 CACAAGTGGCCCCAGGGCTGGTGGGCTGGCTAATCAGCGGC CACAAGTGGCCCCAGGGCTTGTGGGCTGGCTAATCAGCGGC < 41bp 0.454953679710019 0.778082841775048 NA NA prediction 0.556165683550097 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31811718 chr20:31811717 synonymous SNV . 0 20 hm7G_associated_SNPs_16848 0 0 0 0 1 BPIFA3 chr20:31811767 5'GT 31811767 Upstream 51bp 16015 chr16 1392228 1392228 1 + G T UCEC 1392229 + 1392209 1392249 41 CCGCGCAAACGGGACAGCAGGACCCACCGAGGACCACACCG CCGCGCAAACGGGACAGCATGACCCACCGAGGACCACACCG < 41bp 0.435848343857107 0.778070314673444 NA NA prediction 0.556140629346888 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392229 chr16:1392228 stopgain 0.084 0 20 hm7G_associated_SNPs_16850 0 0 0 0 2 BAIAP3 chr16:1392182 3'AG 1392182 Downstream 47bp 16016 chr16 1392228 1392228 1 + G T UCEC 1392229 + 1392209 1392249 41 CCGCGCAAACGGGACAGCAGGACCCACCGAGGACCACACCG CCGCGCAAACGGGACAGCATGACCCACCGAGGACCACACCG < 41bp 0.435848343857107 0.778070314673444 NA NA prediction 0.556140629346888 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392229 chr16:1392228 stopgain 0.084 0 20 hm7G_associated_SNPs_16850 0 0 0 0 2 BAIAP3 chr16:1392284 5'GT 1392284 Upstream 57bp 16017 chr2 220147594 220147594 1 + G T LUAD 220147595 + 220147575 220147615 41 CTCAGAGCTTCAGAACCGGGGTTCCCGACACTCAGGCCCCT CTCAGAGCTTCAGAACCGGTGTTCCCGACACTCAGGCCCCT < 41bp 0.437734024869097 0.778065952845969 NA NA prediction 0.556131905691938 Functional Gain - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147595 chr2:220147594 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_16851 0 0 0 0 2 DNAJB2 chr2:220147559 3'AG 220147559 Downstream 36bp 16018 chr2 220147594 220147594 1 + G T LUAD 220147595 + 220147575 220147615 41 CTCAGAGCTTCAGAACCGGGGTTCCCGACACTCAGGCCCCT CTCAGAGCTTCAGAACCGGTGTTCCCGACACTCAGGCCCCT < 41bp 0.437734024869097 0.778065952845969 NA NA prediction 0.556131905691938 Functional Gain - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147595 chr2:220147594 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_16851 0 0 0 0 2 DNAJB2 chr2:220147651 5'GT 220147651 Upstream 58bp 16019 chr3 186571004 186571004 1 - C A STAD 186571003 - 186570983 186571023 41 TCTCTGCCATCACGGCCTGGGGCCCCATTATGGCCCGGATG TCTCTGCCATCACGGCCTGTGGCCCCATTATGGCCCGGATG < 41bp 0.554934373752596 0.832989168183843 NA NA prediction 0.556109588862495 Functional Gain - ADIPOQ ENSG00000181092 CDS Human protein_coding chr3:186571003 chr3:186571004 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16854 0 0 0 0 1 ADIPOQ chr3:186571031 3'AG 186571031 Downstream 28bp 16020 chr11 122665458 122665458 1 + G T SKCM 122665459 + 122665439 122665479 41 CCAACTCTCTCACGTTTGGGGATGGAGTATTGGAGAGGCGG CCAACTCTCTCACGTTTGGTGATGGAGTATTGGAGAGGCGG < 41bp 0.573440802466811 0.851491668698353 NA NA prediction 0.556101732463085 Functional Gain - UBASH3B ENSG00000154127 CDS Human protein_coding chr11:122665459 chr11:122665458 synonymous SNV . 0 20 hm7G_associated_SNPs_16855 0 0 0 0 2 UBASH3B chr11:122665410 3'AG 122665410 Downstream 49bp 16021 chr11 122665458 122665458 1 + G T SKCM 122665459 + 122665439 122665479 41 CCAACTCTCTCACGTTTGGGGATGGAGTATTGGAGAGGCGG CCAACTCTCTCACGTTTGGTGATGGAGTATTGGAGAGGCGG < 41bp 0.573440802466811 0.851491668698353 NA NA prediction 0.556101732463085 Functional Gain - UBASH3B ENSG00000154127 CDS Human protein_coding chr11:122665459 chr11:122665458 synonymous SNV . 0 20 hm7G_associated_SNPs_16855 0 0 0 0 2 UBASH3B chr11:122665542 5'GT 122665542 Upstream 85bp 16022 chr6 35278241 35278241 1 + G T LUSC 35278242 + 35278222 35278262 41 AGCCCTGGTGGCAGGTGGAGGAGGGGGCTTTTGTTAAAGAG AGCCCTGGTGGCAGGTGGATGAGGGGGCTTTTGTTAAAGAG < 41bp 0.455514424463964 0.77804716277558 NA NA prediction 0.556094325551159 Functional Gain - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35278242 chr6:35278241 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_16856 0 0 0 0 1 DEF6 chr6:35278236 3'AG 35278236 Downstream 6bp 16023 chr9 101818551 101818551 1 + G T STAD 101818552 + 101818532 101818572 41 GCCTTGACAGGGCCAAAAAGGGGAGACAGTCGTTGGGCCCC GCCTTGACAGGGCCAAAAATGGGAGACAGTCGTTGGGCCCC < 41bp 0.569110984967919 0.847155109863375 NA NA prediction 0.556088249790912 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101818552 chr9:101818551 nonsynonymous SNV 0.941 5 20 hm7G_associated_SNPs_16858 0 0 0 0 1 COL15A1 chr9:101818542 3'AG 101818542 Downstream 10bp 16024 chr6 19838366 19838366 1 + G T LUAD 19838367 + 19838347 19838387 41 CCGCGCCGCCACACCACCCGGCCGGGACCTGTCCAGCCGCG CCGCGCCGCCACACCACCCTGCCGGGACCTGTCCAGCCGCG < 41bp 0.552721588111135 0.830747817294917 NA NA prediction 0.556052458367563 Functional Gain - ID4 ENSG00000172201 CDS Human protein_coding chr6:19838367 chr6:19838366 synonymous SNV . 0 20 hm7G_associated_SNPs_16859 0 0 0 0 1 ID4 chr6:19838426 5'GT 19838426 Upstream 61bp 16025 chr9 126137602 126137602 1 + G T GBM 126137603 + 126137583 126137623 41 CTGCAATGCCAGATTCTCCGGCCAGTTCTGTGAAGTGGCGG CTGCAATGCCAGATTCTCCTGCCAGTTCTGTGAAGTGGCGG < 41bp 0.44669167812135 0.778025023788197 NA NA prediction 0.556050047576394 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126137603 chr9:126137602 nonsynonymous SNV 0.895 5 20 hm7G_associated_SNPs_16860 0 0 0 0 1 CRB2 chr9:126137622 5'GT 126137622 Upstream 21bp 16026 chr2 197565880 197565880 1 + G T LUAD 197565881 + 197565861 197565901 41 CTGAAAGTAAAAATAAACTGGCCTATGAAAACGGAAAACTC CTGAAAGTAAAAATAAACTTGCCTATGAAAACGGAAAACTC < 41bp 0.463406443226747 0.778018726730717 NA NA prediction 0.556037453461434 Functional Gain - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197565881 chr2:197565880 synonymous SNV . 0 20 hm7G_associated_SNPs_16862 0 0 1 0 2 CCDC150 chr2:197565833 3'AG 197565833 Downstream 48bp 16027 chr2 197565880 197565880 1 + G T LUAD 197565881 + 197565861 197565901 41 CTGAAAGTAAAAATAAACTGGCCTATGAAAACGGAAAACTC CTGAAAGTAAAAATAAACTTGCCTATGAAAACGGAAAACTC < 41bp 0.463406443226747 0.778018726730717 NA NA prediction 0.556037453461434 Functional Gain - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197565881 chr2:197565880 synonymous SNV . 0 20 hm7G_associated_SNPs_16862 0 0 1 0 2 CCDC150 chr2:197565904 5'GT 197565904 Upstream 25bp 16028 chr7 150501526 150501526 1 + G T KIRP 150501527 + 150501507 150501547 41 GCATCTCTGACCCCTCTGTGGCTGTACTGCTGGAGAATGTT GCATCTCTGACCCCTCTGTTGCTGTACTGCTGGAGAATGTT < 41bp 0.577384320392515 0.855385687035182 NA NA prediction 0.556002733285335 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150501527 chr7:150501526 nonsynonymous SNV 0.043 0 20 hm7G_associated_SNPs_16863 0 0 0 0 2 TMEM176A chr7:150501450 3'AG 150501450 Downstream 77bp 16029 chr7 150501526 150501526 1 + G T KIRP 150501527 + 150501507 150501547 41 GCATCTCTGACCCCTCTGTGGCTGTACTGCTGGAGAATGTT GCATCTCTGACCCCTCTGTTGCTGTACTGCTGGAGAATGTT < 41bp 0.577384320392515 0.855385687035182 NA NA prediction 0.556002733285335 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150501527 chr7:150501526 nonsynonymous SNV 0.043 0 20 hm7G_associated_SNPs_16863 0 0 0 0 2 TMEM176A chr7:150501560 5'GT 150501560 Upstream 35bp 16030 chr11 47008787 47008787 1 + G T UCEC 47008788 + 47008768 47008808 41 ATGTCCTCACCTACATGGAGGATGCAGTGTGCCAGCTGCTA ATGTCCTCACCTACATGGATGATGCAGTGTGCCAGCTGCTA < 41bp 0.457332559450337 0.777996388897654 NA NA prediction 0.555992777795309 Functional Gain - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47008788 chr11:47008787 stopgain 1.000 2 20 hm7G_associated_SNPs_16864 0 0 1 0 2 C11orf49 chr11:47008759 3'AG 47008759 Downstream 29bp 16031 chr11 47008787 47008787 1 + G T UCEC 47008788 + 47008768 47008808 41 ATGTCCTCACCTACATGGAGGATGCAGTGTGCCAGCTGCTA ATGTCCTCACCTACATGGATGATGCAGTGTGCCAGCTGCTA < 41bp 0.457332559450337 0.777996388897654 NA NA prediction 0.555992777795309 Functional Gain - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47008788 chr11:47008787 stopgain 1.000 2 20 hm7G_associated_SNPs_16864 0 0 1 0 2 C11orf49 chr11:47008861 5'GT 47008861 Upstream 75bp 16032 chr18 33734940 33734940 1 + G T LUAD 33734941 + 33734921 33734961 41 ACTAGACTTTTTGCTCCATGGAAGAGAAAAGACCAATCACA ACTAGACTTTTTGCTCCATTGAAGAGAAAAGACCAATCACA < 41bp 0.471420188561489 0.777988438039361 NA NA prediction 0.555976876078722 Functional Gain - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33734941 chr18:33734940 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16866 0 0 1 0 1 ELP2 chr18:33734962 5'GT 33734962 Upstream 23bp 16033 chr5 79355673 79355673 1 + G T STAD 79355674 + 79355654 79355694 41 AGAGATGGCTTCCAGTGTGGGCCCTGCCCCGAGGGCTACAC AGAGATGGCTTCCAGTGTGTGCCCTGCCCCGAGGGCTACAC < 41bp 0.442976216481316 0.777980014212647 NA NA prediction 0.555960028425293 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79355674 chr5:79355673 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_16868 0 0 0 0 1 THBS4 chr5:79355728 5'GT 79355728 Upstream 56bp 16034 chr19 14030746 14030746 1 + G T UCEC 14030747 + 14030727 14030767 41 AAGGCCCAGAGGATGAAGAGGATGAGGTGCCTAAGAAGGTT AAGGCCCAGAGGATGAAGATGATGAGGTGCCTAAGAAGGTT < 41bp 0.450178882055405 0.777975078144896 NA NA prediction 0.555950156289793 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030747 chr19:14030746 nonsynonymous SNV 0.952 0 20 hm7G_associated_SNPs_16870 0 0 1 0 1 CC2D1A chr19:14030764 5'GT 14030764 Upstream 19bp 16035 chrX 14915215 14915215 1 + G T LUAD 14915216 + 14915196 14915236 41 CTGCTTAAAGTCTGGATCAGGGTGAAGTATCATGTAAAAGA CTGCTTAAAGTCTGGATCATGGTGAAGTATCATGTAAAAGA < 41bp 0.537906452707098 0.815875489539266 NA NA prediction 0.555938073664335 Functional Gain - MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14915216 chrX:14915215 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16871 0 0 0 0 1 MOSPD2 chrX:14915206 3'AG 14915206 Downstream 10bp 16036 chr9 135374919 135374919 1 + G T BLCA 135374920 + 135374900 135374940 41 ACATCCGCATCAGTGACCAGGATGACCGGCGCATGAAGAAA ACATCCGCATCAGTGACCATGATGACCGGCGCATGAAGAAA < 41bp 0.576128463324559 0.854088300610439 NA NA prediction 0.555919674571759 Functional Gain - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135374920 chr9:135374919 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_16872 0 0 0 0 1 CFAP77 chr9:135374987 5'GT 135374987 Upstream 69bp 16037 chr6 43190358 43190358 1 + G T UCEC 43190359 + 43190339 43190379 41 TCCTCAATGATGCCTGCCAGGGACTGGAGCAGGCTCGGAAG TCCTCAATGATGCCTGCCATGGACTGGAGCAGGCTCGGAAG < 41bp 0.582457086693844 0.860412722114391 NA NA prediction 0.555911270841093 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43190359 chr6:43190358 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_16873 0 0 1 0 2 CUL9 chr6:43190269 3'AG 43190269 Downstream 90bp 16038 chr6 43190358 43190358 1 + G T UCEC 43190359 + 43190339 43190379 41 TCCTCAATGATGCCTGCCAGGGACTGGAGCAGGCTCGGAAG TCCTCAATGATGCCTGCCATGGACTGGAGCAGGCTCGGAAG < 41bp 0.582457086693844 0.860412722114391 NA NA prediction 0.555911270841093 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43190359 chr6:43190358 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_16873 0 0 1 0 2 CUL9 chr6:43190379 5'GT 43190379 Upstream 22bp 16039 chr11 64954758 64954758 1 + G T BLCA 64954759 + 64954739 64954779 41 CCATGCCTACTCTGTGACCGGGGCCAAGCAGGTACTGCCCT CCATGCCTACTCTGTGACCTGGGCCAAGCAGGTACTGCCCT < 41bp 0.585191222114968 0.863140465841939 NA NA prediction 0.555898487453943 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64954759 chr11:64954758 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_16875 0 0 1 0 2 CAPN1 chr11:64954686 3'AG 64954686 Downstream 73bp 16040 chr11 64954758 64954758 1 + G T BLCA 64954759 + 64954739 64954779 41 CCATGCCTACTCTGTGACCGGGGCCAAGCAGGTACTGCCCT CCATGCCTACTCTGTGACCTGGGCCAAGCAGGTACTGCCCT < 41bp 0.585191222114968 0.863140465841939 NA NA prediction 0.555898487453943 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64954759 chr11:64954758 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_16875 0 0 1 0 2 CAPN1 chr11:64954769 5'GT 64954769 Upstream 12bp 16041 chr18 44595943 44595943 1 + G T UCEC 44595944 + 44595924 44595964 41 TCCACCATTGTCAGCAAATGGAGAGGGGATTCAGAAAAACT TCCACCATTGTCAGCAAATTGAGAGGGGATTCAGAAAAACT < 41bp 0.464508862354513 0.777948984117463 NA NA prediction 0.555897968234927 Functional Gain - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44595944 chr18:44595943 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_16876 0 0 0 0 2 KATNAL2 chr18:44595853 3'AG 44595853 Downstream 91bp 16042 chr18 44595943 44595943 1 + G T UCEC 44595944 + 44595924 44595964 41 TCCACCATTGTCAGCAAATGGAGAGGGGATTCAGAAAAACT TCCACCATTGTCAGCAAATTGAGAGGGGATTCAGAAAAACT < 41bp 0.464508862354513 0.777948984117463 NA NA prediction 0.555897968234927 Functional Gain - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44595944 chr18:44595943 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_16876 0 0 0 0 2 KATNAL2 chr18:44595971 5'GT 44595971 Upstream 29bp 16043 chr17 42837095 42837095 1 + G T THCA 42837096 + 42837076 42837116 41 CCTTGTTTCCCCAGGTCTTGGGACCCAAGGTCCTGCTGGAG CCTTGTTTCCCCAGGTCTTTGGACCCAAGGTCCTGCTGGAG < 41bp 0.580808822319271 0.858727065007876 NA NA prediction 0.555836485377211 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42837096 chr17:42837095 nonsynonymous SNV 0.778 1 20 hm7G_associated_SNPs_16877 0 0 0 0 1 ADAM11 chr17:42837090 3'AG 42837090 Downstream 6bp 16044 chr1 205495279 205495279 1 + G T COAD 205495280 + 205495260 205495300 41 TCCGGCTGGAGCACGAGGAGGGAGCGCCCTGCACTGCCATC TCCGGCTGGAGCACGAGGATGGAGCGCCCTGCACTGCCATC < 41bp 0.439551817210763 0.777899715210076 NA NA prediction 0.555799430420152 Functional Gain - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205495280 chr1:205495279 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_16879 0 0 1 0 1 CDK18 chr1:205495193 3'AG 205495193 Downstream 87bp 16045 chr17 4496281 4496281 1 + G T UCEC 4496282 + 4496262 4496302 41 TCAGCACCAGATCCCCCCAGGCCTCGTCCTGTGAGCCTCTC TCAGCACCAGATCCCCCCATGCCTCGTCCTGTGAGCCTCTC < 41bp 0.432524419009375 0.77787210686678 NA NA prediction 0.555744213733561 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4496282 chr17:4496281 nonsynonymous SNV 0.529 2 20 hm7G_associated_SNPs_16882 0 0 0 0 1 SMTNL2 chr17:4496224 3'AG 4496224 Downstream 58bp 16046 chr19 4219712 4219712 1 + G T LUAD 4219713 + 4219693 4219733 41 GCTCGCCAGGCCCAGAGCCGGGCCCAGGAGGCTCTGGACAA GCTCGCCAGGCCCAGAGCCTGGCCCAGGAGGCTCTGGACAA < 41bp 0.578065110430687 0.855915176128389 NA NA prediction 0.555700131395404 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4219713 chr19:4219712 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_16883 0 0 0 0 1 ANKRD24 chr19:4219755 5'GT 4219755 Upstream 44bp 16047 chr3 179298770 179298770 1 + G T KIRP 179298771 + 179298751 179298791 41 GCGGCTAAAGATTCCAGAAGGATTATTTGACCCTTCCAATG GCGGCTAAAGATTCCAGAATGATTATTTGACCCTTCCAATG < 41bp 0.551962216191779 0.829809414201572 NA NA prediction 0.555694396019585 Functional Gain - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179298771 chr3:179298770 stopgain 0.992 1 20 hm7G_associated_SNPs_16884 0 0 0 0 1 ACTL6A chr3:179298796 5'GT 179298796 Upstream 27bp 16048 chr12 32369326 32369326 1 + G T LUSC 32369327 + 32369307 32369347 41 AACGAGCTGAAACAGAGCCGGGCTGTGGTCACTAATGTACA AACGAGCTGAAACAGAGCCTGGCTGTGGTCACTAATGTACA < 41bp 0.453422057458674 0.777839840655051 NA NA prediction 0.555679681310102 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32369327 chr12:32369326 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16885 0 0 1 0 1 BICD1 chr12:32369393 5'GT 32369393 Upstream 68bp 16049 chr1 11594530 11594530 1 + G T LUAD 11594531 + 11594511 11594551 41 AGCTGCAGGCCTTGCCCGAGGGCTCAGTCCTGCGCCGGGGC AGCTGCAGGCCTTGCCCGATGGCTCAGTCCTGCGCCGGGGC < 41bp 0.430790250362707 0.777836358129213 NA NA prediction 0.555672716258427 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11594531 chr1:11594530 nonsynonymous SNV 0.764 2 20 hm7G_associated_SNPs_16886 0 0 0 0 1 DISP3 chr1:11594438 3'AG 11594438 Downstream 93bp 16050 chr9 37424860 37424860 1 + G T DLBC 37424861 + 37424841 37424881 41 GCTGTGAGGTGGAGCAGTGGGACTCGGATGAGCCCATCCCT GCTGTGAGGTGGAGCAGTGTGACTCGGATGAGCCCATCCCT < 41bp 0.461856284732448 0.777813239320003 NA NA prediction 0.555626478640006 Functional Gain - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37424861 chr9:37424860 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16890 0 0 1 0 1 GRHPR chr9:37424842 3'AG 37424842 Downstream 19bp 16051 chr20 2377168 2377168 1 + G T UCS 2377169 + 2377149 2377189 41 CAGAGGACGATGTGTTTCTGGCCTCAGAGGAGGAGAGACAG CAGAGGACGATGTGTTTCTTGCCTCAGAGGAGGAGAGACAG < 41bp 0.581697593458312 0.859481661093225 NA NA prediction 0.555568135269827 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2377169 chr20:2377168 synonymous SNV . 0 20 hm7G_associated_SNPs_16895 0 0 0 0 1 TGM6 chr20:2377152 3'AG 2377152 Downstream 17bp 16052 chr6 41318416 41318416 1 + G T COAD 41318417 + 41318397 41318437 41 TTTCCTGCTCTGATTGCAGGGGGGACATATGGTGGAAAACC TTTCCTGCTCTGATTGCAGTGGGGACATATGGTGGAAAACC < 41bp 0.478376050339794 0.777780806195946 NA NA prediction 0.555561612391893 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41318417 chr6:41318416 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_16896 0 0 0 0 1 NCR2 chr6:41318416 3'AG 41318416 Downstream 1bp 16053 chr2 113950646 113950646 1 + G T SKCM 113950647 + 113950627 113950667 41 ATGACTTTAGCAGGGCTGTGGCTGAGGAGTACCTGTCCTTC ATGACTTTAGCAGGGCTGTTGCTGAGGAGTACCTGTCCTTC < 41bp 0.581185532465326 0.858937696246184 NA NA prediction 0.555504327561715 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950647 chr2:113950646 synonymous SNV . 0 20 hm7G_associated_SNPs_16899 0 0 0 0 2 PSD4 chr2:113950625 3'AG 113950625 Downstream 22bp 16054 chr2 113950646 113950646 1 + G T SKCM 113950647 + 113950627 113950667 41 ATGACTTTAGCAGGGCTGTGGCTGAGGAGTACCTGTCCTTC ATGACTTTAGCAGGGCTGTTGCTGAGGAGTACCTGTCCTTC < 41bp 0.581185532465326 0.858937696246184 NA NA prediction 0.555504327561715 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950647 chr2:113950646 synonymous SNV . 0 20 hm7G_associated_SNPs_16899 0 0 0 0 2 PSD4 chr2:113950705 5'GT 113950705 Upstream 60bp 16055 chr2 207827300 207827300 1 + G T UCEC 207827301 + 207827281 207827321 41 GTTAATTCTCACACCTTACGGCTACACCAAAAATAAATCAA GTTAATTCTCACACCTTACTGCTACACCAAAAATAAATCAA < 41bp 0.566934699269668 0.844680100040423 NA NA prediction 0.555490801541509 Functional Gain - CPO ENSG00000144410 CDS Human protein_coding chr2:207827301 chr2:207827300 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_16901 0 0 0 0 1 CPO chr2:207827338 5'GT 207827338 Upstream 39bp 16056 chr15 74238834 74238834 1 + G T COAD 74238835 + 74238815 74238855 41 CCAGCGCGTGAAGAACCAGGGCACAGCAGACTTCCTCCCCA CCAGCGCGTGAAGAACCAGTGCACAGCAGACTTCCTCCCCA < 41bp 0.581029522173827 0.858774351142736 NA NA prediction 0.555489657937819 Functional Gain - LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74238835 chr15:74238834 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_16902 0 0 0 0 2 LOXL1 chr15:74238758 3'AG 74238758 Downstream 77bp 16057 chr15 74238834 74238834 1 + G T COAD 74238835 + 74238815 74238855 41 CCAGCGCGTGAAGAACCAGGGCACAGCAGACTTCCTCCCCA CCAGCGCGTGAAGAACCAGTGCACAGCAGACTTCCTCCCCA < 41bp 0.581029522173827 0.858774351142736 NA NA prediction 0.555489657937819 Functional Gain - LOXL1 ENSG00000129038 CDS Human protein_coding chr15:74238835 chr15:74238834 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_16902 0 0 0 0 2 LOXL1 chr15:74238895 5'GT 74238895 Upstream 62bp 16058 chr8 37697043 37697043 1 + G T LUAD 37697044 + 37697024 37697064 41 CGTGTGTCCCGGAAAGGCTGGCACATGCTGCTGAACTTGTG CGTGTGTCCCGGAAAGGCTTGCACATGCTGCTGAACTTGTG < 41bp 0.585125176165514 0.862861993913451 NA NA prediction 0.555473635495874 Functional Gain - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37697044 chr8:37697043 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16903 0 0 0 0 2 ADGRA2 chr8:37697017 3'AG 37697017 Downstream 27bp 16059 chr8 37697043 37697043 1 + G T LUAD 37697044 + 37697024 37697064 41 CGTGTGTCCCGGAAAGGCTGGCACATGCTGCTGAACTTGTG CGTGTGTCCCGGAAAGGCTTGCACATGCTGCTGAACTTGTG < 41bp 0.585125176165514 0.862861993913451 NA NA prediction 0.555473635495874 Functional Gain - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37697044 chr8:37697043 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16903 0 0 0 0 2 ADGRA2 chr8:37697140 5'GT 37697140 Upstream 98bp 16060 chr3 170016837 170016837 1 + G T LUSC 170016838 + 170016818 170016858 41 AAATATTTCTGGGGAATTTGGTTTGGACAACTTTGATTCTC AAATATTTCTGGGGAATTTTGTTTGGACAACTTTGATTCTC < 41bp 0.499738571682513 0.777727173530914 NA NA prediction 0.555454347061828 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170016838 chr3:170016837 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16904 0 0 0 0 2 PRKCI chr3:170016783 3'AG 170016783 Downstream 55bp 16061 chr3 170016837 170016837 1 + G T LUSC 170016838 + 170016818 170016858 41 AAATATTTCTGGGGAATTTGGTTTGGACAACTTTGATTCTC AAATATTTCTGGGGAATTTTGTTTGGACAACTTTGATTCTC < 41bp 0.499738571682513 0.777727173530914 NA NA prediction 0.555454347061828 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170016838 chr3:170016837 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16904 0 0 0 0 2 PRKCI chr3:170016898 5'GT 170016898 Upstream 62bp 16062 chr3 158402336 158402336 1 + G T LUAD 158402337 + 158402317 158402357 41 TTTTAGATGCCTGCGAGAAGGGCCCTCTTTCTGGTCACAAG TTTTAGATGCCTGCGAGAATGGCCCTCTTTCTGGTCACAAG < 41bp 0.529091406224798 0.806811333519441 NA NA prediction 0.555439854589285 Functional Gain - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158402337 chr3:158402336 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16905 0 0 0 0 1 GFM1 chr3:158402313 3'AG 158402313 Downstream 24bp 16063 chr10 696115 696115 1 + G T SARC 696116 + 696096 696136 41 CCCCAGCAGAGTCAACACTGGAGGTCCTGCGGGGTGGGTGG CCCCAGCAGAGTCAACACTTGAGGTCCTGCGGGGTGGGTGG < 41bp 0.46987405394892 0.777718596109596 NA NA prediction 0.555437192219191 Functional Gain - PRR26 ENSG00000180525 CDS Human protein_coding chr10:696116 chr10:696115 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_16906 0 0 0 0 1 PRR26 chr10:696118 5'GT 696118 Upstream 4bp 16064 chr1 53279551 53279551 1 + G T LUAD 53279552 + 53279532 53279572 41 CATTCAGCTATTTTGAAATGGCCAACTCCAGAGTGTGAGAT CATTCAGCTATTTTGAAATTGCCAACTCCAGAGTGTGAGAT < 41bp 0.464341650293441 0.777714000072258 NA NA prediction 0.555428000144516 Functional Gain - ZYG11B ENSG00000162378 CDS Human protein_coding chr1:53279552 chr1:53279551 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16908 0 0 1 1 2 ZYG11B chr1:53279532 3'AG 53279532 Downstream 20bp 16065 chr1 53279551 53279551 1 + G T LUAD 53279552 + 53279532 53279572 41 CATTCAGCTATTTTGAAATGGCCAACTCCAGAGTGTGAGAT CATTCAGCTATTTTGAAATTGCCAACTCCAGAGTGTGAGAT < 41bp 0.464341650293441 0.777714000072258 NA NA prediction 0.555428000144516 Functional Gain - ZYG11B ENSG00000162378 CDS Human protein_coding chr1:53279552 chr1:53279551 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16908 0 0 1 1 2 ZYG11B chr1:53279584 5'GT 53279584 Upstream 34bp 16066 chr1 231351141 231351141 1 + G T LUAD 231351142 + 231351122 231351162 41 TCACCCTGCACACAGGATTGGAAGTGCCGACTAACCTGGGG TCACCCTGCACACAGGATTTGAAGTGCCGACTAACCTGGGG < 41bp 0.473721823210794 0.777663147785118 NA NA prediction 0.555326295570236 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231351142 chr1:231351141 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16911 0 0 0 0 1 TRIM67 chr1:231351121 3'AG 231351121 Downstream 21bp 16067 chr2 173292637 173292637 1 + G T SKCM 173292638 + 173292618 173292658 41 CCGGAAATATGGAGACCCCGGGAGCCTCTTCGGCTTCTCGC CCGGAAATATGGAGACCCCTGGAGCCTCTTCGGCTTCTCGC < 41bp 0.450565409856173 0.777650303275326 NA NA prediction 0.555300606550652 Functional Gain - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173292638 chr2:173292637 nonsynonymous SNV 0.900 5 20 hm7G_associated_SNPs_16913 0 0 1 0 1 ITGA6 chr2:173292698 5'GT 173292698 Upstream 62bp 16068 chr19 41088331 41088331 1 + G T COAD 41088332 + 41088312 41088352 41 CATTGCTACAAGCCACACAGGGCGCATCGGGGTGTGGAATG CATTGCTACAAGCCACACATGGCGCATCGGGGTGTGGAATG < 41bp 0.58854664482139 0.866178003987585 NA NA prediction 0.555262718332389 Functional Gain - SHKBP1 ENSG00000160410;ENSG00000160410 exonic;splicing Human protein_coding chr19:41088332 chr19:41088331 nonsynonymous SNV 0.198 3 20 hm7G_associated_SNPs_16914 0 0 1 0 2 SHKBP1 chr19:41088257 3'AG 41088257 Downstream 75bp 16069 chr19 41088331 41088331 1 + G T COAD 41088332 + 41088312 41088352 41 CATTGCTACAAGCCACACAGGGCGCATCGGGGTGTGGAATG CATTGCTACAAGCCACACATGGCGCATCGGGGTGTGGAATG < 41bp 0.58854664482139 0.866178003987585 NA NA prediction 0.555262718332389 Functional Gain - SHKBP1 ENSG00000160410;ENSG00000160410 exonic;splicing Human protein_coding chr19:41088332 chr19:41088331 nonsynonymous SNV 0.198 3 20 hm7G_associated_SNPs_16914 0 0 1 0 2 SHKBP1 chr19:41088372 5'GT 41088372 Upstream 42bp 16070 chr19 38860800 38860800 1 + G T UCEC 38860801 + 38860781 38860821 41 CCCTCCCAACCCCTGCAGAGGAGTGGACACGAGCACCTACT CCCTCCCAACCCCTGCAGATGAGTGGACACGAGCACCTACT < 41bp 0.56624614159215 0.843874273828027 NA NA prediction 0.555256264471754 Functional Gain - CATSPERG ENSG00000099338 CDS Human protein_coding chr19:38860801 chr19:38860800 stopgain 0.812 0 20 hm7G_associated_SNPs_16915 0 0 0 0 2 CATSPERG chr19:38860799 3'AG 38860799 Downstream 2bp 16071 chr19 38860800 38860800 1 + G T UCEC 38860801 + 38860781 38860821 41 CCCTCCCAACCCCTGCAGAGGAGTGGACACGAGCACCTACT CCCTCCCAACCCCTGCAGATGAGTGGACACGAGCACCTACT < 41bp 0.56624614159215 0.843874273828027 NA NA prediction 0.555256264471754 Functional Gain - CATSPERG ENSG00000099338 CDS Human protein_coding chr19:38860801 chr19:38860800 stopgain 0.812 0 20 hm7G_associated_SNPs_16915 0 0 0 0 2 CATSPERG chr19:38860898 5'GT 38860898 Upstream 99bp 16072 chr11 129312769 129312769 1 + G T SKCM 129312770 + 129312750 129312790 41 TGGGACTCACTCAGCTGCAGGTGAAGACCTGGTATCAGAAT TGGGACTCACTCAGCTGCATGTGAAGACCTGGTATCAGAAT < 41bp 0.556173905518505 0.833798573318073 NA NA prediction 0.555249335599136 Functional Gain - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129312770 chr11:129312769 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_16916 0 0 1 0 2 BARX2 chr11:129312730 3'AG 129312730 Downstream 40bp 16073 chr11 129312769 129312769 1 + G T SKCM 129312770 + 129312750 129312790 41 TGGGACTCACTCAGCTGCAGGTGAAGACCTGGTATCAGAAT TGGGACTCACTCAGCTGCATGTGAAGACCTGGTATCAGAAT < 41bp 0.556173905518505 0.833798573318073 NA NA prediction 0.555249335599136 Functional Gain - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129312770 chr11:129312769 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_16916 0 0 1 0 2 BARX2 chr11:129312814 5'GT 129312814 Upstream 46bp 16074 chr4 52927003 52927003 1 + G T SARC 52927004 + 52926984 52927024 41 GCCTTTTGCCTTGGCTGGAGGCTTCCTTTACTGCTGCTTCC GCCTTTTGCCTTGGCTGGATGCTTCCTTTACTGCTGCTTCC < 41bp 0.456823576293514 0.777618505222888 NA NA prediction 0.555237010445776 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52927004 chr4:52927003 nonsynonymous SNV 0.149 2 20 hm7G_associated_SNPs_16918 0 0 0 6 2 SPATA18 chr4:52926948 3'AG 52926948 Downstream 56bp 16075 chr4 52927003 52927003 1 + G T SARC 52927004 + 52926984 52927024 41 GCCTTTTGCCTTGGCTGGAGGCTTCCTTTACTGCTGCTTCC GCCTTTTGCCTTGGCTGGATGCTTCCTTTACTGCTGCTTCC < 41bp 0.456823576293514 0.777618505222888 NA NA prediction 0.555237010445776 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52927004 chr4:52927003 nonsynonymous SNV 0.149 2 20 hm7G_associated_SNPs_16918 0 0 0 6 2 SPATA18 chr4:52927063 5'GT 52927063 Upstream 61bp 16076 chr2 192194740 192194740 1 + G T STAD 192194741 + 192194721 192194761 41 TCTCATTACTGGGGAAAGTGGAGCAGGAAAAACAGGTAAGG TCTCATTACTGGGGAAAGTTGAGCAGGAAAAACAGGTAAGG < 41bp 0.461189905759452 0.777599021869868 NA NA prediction 0.555198043739737 Functional Gain - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192194741 chr2:192194740 stopgain 0.954 1 20 hm7G_associated_SNPs_16920 0 0 1 0 2 MYO1B chr2:192194661 3'AG 192194661 Downstream 80bp 16077 chr2 192194740 192194740 1 + G T STAD 192194741 + 192194721 192194761 41 TCTCATTACTGGGGAAAGTGGAGCAGGAAAAACAGGTAAGG TCTCATTACTGGGGAAAGTTGAGCAGGAAAAACAGGTAAGG < 41bp 0.461189905759452 0.777599021869868 NA NA prediction 0.555198043739737 Functional Gain - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192194741 chr2:192194740 stopgain 0.954 1 20 hm7G_associated_SNPs_16920 0 0 1 0 2 MYO1B chr2:192194755 5'GT 192194755 Upstream 16bp 16078 chr11 43904670 43904670 1 + G T rs34762499 43904671 + 43904651 43904691 41 CCATCTCCACCAGAAGCCTGGCCAGACCTGGAAGAACAAAG CCATCTCCACCAGAAGCCTTGCCAGACCTGGAAGAACAAAG < 41bp 0.440722736417529 0.777596198364667 NA NA prediction 0.555192396729334 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43904671 chr11:43904670 nonsynonymous SNV 0.041 1 20 hm7G_associated_SNPs_16921 0 0 1 0 2 ALKBH3 chr11:43904635 3'AG 43904635 Downstream 36bp 16079 chr11 43904670 43904670 1 + G T rs34762499 43904671 + 43904651 43904691 41 CCATCTCCACCAGAAGCCTGGCCAGACCTGGAAGAACAAAG CCATCTCCACCAGAAGCCTTGCCAGACCTGGAAGAACAAAG < 41bp 0.440722736417529 0.777596198364667 NA NA prediction 0.555192396729334 Functional Gain - ALKBH3 ENSG00000166199 CDS Human protein_coding chr11:43904671 chr11:43904670 nonsynonymous SNV 0.041 1 20 hm7G_associated_SNPs_16921 0 0 1 0 2 ALKBH3 chr11:43904738 5'GT 43904738 Upstream 69bp 16080 chr17 72363856 72363856 1 + G T THYM 72363857 + 72363837 72363877 41 AGCTGGGACCTCCGAATAAGGCCATCCAAGGACTCCAGCAG AGCTGGGACCTCCGAATAATGCCATCCAAGGACTCCAGCAG < 41bp 0.578997399427268 0.856583299061905 NA NA prediction 0.555171799269274 Functional Gain - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72363857 chr17:72363856 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_16923 0 0 0 0 1 GPR142 chr17:72363887 5'GT 72363887 Upstream 32bp 16081 chr19 30313167 30313167 1 + G T LIHC 30313168 + 30313148 30313188 41 TGTTGGATCTCTGTGTCCTGGATGTTGACTGCCTTGAATTT TGTTGGATCTCTGTGTCCTTGATGTTGACTGCCTTGAATTT < 41bp 0.571724911361163 0.84929497932736 NA NA prediction 0.555140135932394 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313168 chr19:30313167 synonymous SNV . 0 20 hm7G_associated_SNPs_16924 0 0 1 0 2 CCNE1 chr19:30313147 3'AG 30313147 Downstream 21bp 16082 chr19 30313167 30313167 1 + G T LIHC 30313168 + 30313148 30313188 41 TGTTGGATCTCTGTGTCCTGGATGTTGACTGCCTTGAATTT TGTTGGATCTCTGTGTCCTTGATGTTGACTGCCTTGAATTT < 41bp 0.571724911361163 0.84929497932736 NA NA prediction 0.555140135932394 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30313168 chr19:30313167 synonymous SNV . 0 20 hm7G_associated_SNPs_16924 0 0 1 0 2 CCNE1 chr19:30313258 5'GT 30313258 Upstream 92bp 16083 chr9 99227767 99227767 1 + G T LUAD 99227768 + 99227748 99227788 41 AGAATTTGAAAGATATGGTGGGAATGACAAAATGTAAGTTT AGAATTTGAAAGATATGGTTGGAATGACAAAATGTAAGTTT < 41bp 0.557392229254465 0.834961415955692 NA NA prediction 0.555138373402454 Functional Gain - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99227768 chr9:99227767 nonsynonymous SNV 0.775 4 20 hm7G_associated_SNPs_16925 0 0 1 0 1 HABP4 chr9:99227780 5'GT 99227780 Upstream 14bp 16084 chr21 43938612 43938612 1 + G T COAD 43938613 + 43938593 43938633 41 TCATCATCTCATTCTCCAGGGATCAGTGGTGAGTCCTGGTG TCATCATCTCATTCTCCAGTGATCAGTGGTGAGTCCTGGTG < 41bp 0.449512361765805 0.777540691051138 NA NA prediction 0.555081382102276 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43938613 chr21:43938612 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_16929 0 0 0 0 1 SLC37A1 chr21:43938620 5'GT 43938620 Upstream 9bp 16085 chr7 94033868 94033868 1 + G T LUSC 94033869 + 94033849 94033889 41 ATATCTGCTTTCTTTACAGGGCTTAATGGGACCTAGAGGCC ATATCTGCTTTCTTTACAGTGCTTAATGGGACCTAGAGGCC < 41bp 0.459724538232185 0.777539612017767 NA NA prediction 0.555079224035534 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94033869 chr7:94033868 nonsynonymous SNV 0.533 5 20 hm7G_associated_SNPs_16930 0 0 0 0 2 COL1A2 chr7:94033868 3'AG 94033868 Downstream 1bp 16086 chr7 94033868 94033868 1 + G T LUSC 94033869 + 94033849 94033889 41 ATATCTGCTTTCTTTACAGGGCTTAATGGGACCTAGAGGCC ATATCTGCTTTCTTTACAGTGCTTAATGGGACCTAGAGGCC < 41bp 0.459724538232185 0.777539612017767 NA NA prediction 0.555079224035534 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94033869 chr7:94033868 nonsynonymous SNV 0.533 5 20 hm7G_associated_SNPs_16930 0 0 0 0 2 COL1A2 chr7:94033912 5'GT 94033912 Upstream 45bp 16087 chr19 1388928 1388928 1 + G T MESO 1388929 + 1388909 1388949 41 TGGATGACCTCGTCAACTGGGCCCGCCGGGTGAGTACTATG TGGATGACCTCGTCAACTGTGCCCGCCGGGTGAGTACTATG < 41bp 0.441805183063171 0.777531036754898 NA NA prediction 0.555062073509797 Functional Gain - NDUFS7 ENSG00000115286 CDS Human protein_coding chr19:1388929 chr19:1388928 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16931 0 0 1 0 2 NDUFS7 chr19:1388832 3'AG 1388832 Downstream 97bp 16088 chr19 1388928 1388928 1 + G T MESO 1388929 + 1388909 1388949 41 TGGATGACCTCGTCAACTGGGCCCGCCGGGTGAGTACTATG TGGATGACCTCGTCAACTGTGCCCGCCGGGTGAGTACTATG < 41bp 0.441805183063171 0.777531036754898 NA NA prediction 0.555062073509797 Functional Gain - NDUFS7 ENSG00000115286 CDS Human protein_coding chr19:1388929 chr19:1388928 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16931 0 0 1 0 2 NDUFS7 chr19:1388937 5'GT 1388937 Upstream 10bp 16089 chr1 226027006 226027006 1 + G T STAD 226027007 + 226026987 226027027 41 ACATTCAAGGAGGGGACTGGGGGTCCCTGATCTGCACTAAT ACATTCAAGGAGGGGACTGTGGGTCCCTGATCTGCACTAAT < 41bp 0.443170783230038 0.777521884111324 NA NA prediction 0.555043768222648 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226027007 chr1:226027006 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_16932 0 0 1 0 1 EPHX1 chr1:226027047 5'GT 226027047 Upstream 42bp 16090 chr22 21327645 21327645 1 + G T UCEC 21327646 + 21327626 21327666 41 AGAAGGAGCGAGGCAAGGAGGAGCTGTCGGCCAGTGGGAAG AGAAGGAGCGAGGCAAGGATGAGCTGTCGGCCAGTGGGAAG < 41bp 0.577618045455406 0.855134756319191 NA NA prediction 0.555033421727569 Functional Gain - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21327646 chr22:21327645 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_16933 0 0 1 0 2 AIFM3 chr22:21327578 3'AG 21327578 Downstream 68bp 16091 chr22 21327645 21327645 1 + G T UCEC 21327646 + 21327626 21327666 41 AGAAGGAGCGAGGCAAGGAGGAGCTGTCGGCCAGTGGGAAG AGAAGGAGCGAGGCAAGGATGAGCTGTCGGCCAGTGGGAAG < 41bp 0.577618045455406 0.855134756319191 NA NA prediction 0.555033421727569 Functional Gain - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21327646 chr22:21327645 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_16933 0 0 1 0 2 AIFM3 chr22:21327596 3'AG 21327596 Downstream 50bp 16092 chr7 150742300 150742300 1 + G T BLCA 150742301 + 150742281 150742321 41 CCTCCCATCTTCCAGGCTGGGACACATGAAGAGCTCCTGAA CCTCCCATCTTCCAGGCTGTGACACATGAAGAGCTCCTGAA < 41bp 0.469928370711958 0.777515149137882 NA NA prediction 0.555030298275765 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150742301 chr7:150742300 nonsynonymous SNV 0.676 5 20 hm7G_associated_SNPs_16934 0 0 1 0 1 ABCB8 chr7:150742296 3'AG 150742296 Downstream 5bp 16093 chr1 196946845 196946845 1 + G T UCEC 196946846 + 196946826 196946866 41 CATGGGTATCCACTGTTGGGGGAGAAGGTAAGTTGAAAACA CATGGGTATCCACTGTTGGTGGAGAAGGTAAGTTGAAAACA < 41bp 0.510049449020682 0.787548575430824 NA NA prediction 0.554998252820283 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196946846 chr1:196946845 synonymous SNV . 0 20 hm7G_associated_SNPs_16935 0 0 0 0 1 CFHR5 chr1:196946852 5'GT 196946852 Upstream 8bp 16094 chr16 1545401 1545401 1 + G T LUAD 1545402 + 1545382 1545422 41 TGGCCAGATTCCTGCGCGAGGGCCGGCTGGCAGTGCTGATG TGGCCAGATTCCTGCGCGATGGCCGGCTGGCAGTGCTGATG < 41bp 0.441039178659183 0.777487965107912 NA NA prediction 0.554975930215823 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1545402 chr16:1545401 nonsynonymous SNV 0.008 1 20 hm7G_associated_SNPs_16936 0 0 1 0 1 TELO2 chr16:1545347 3'AG 1545347 Downstream 55bp 16095 chr8 2054161 2054161 1 + G T UCEC 2054162 + 2054142 2054182 41 GAGATTTCAGATGATGAGAGGTTTAAAATCGAAACCGTGGG GAGATTTCAGATGATGAGATGTTTAAAATCGAAACCGTGGG < 41bp 0.469157808903059 0.777480435188967 NA NA prediction 0.554960870377935 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2054162 chr8:2054161 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_16937 0 0 0 0 1 MYOM2 chr8:2054188 5'GT 2054188 Upstream 28bp 16096 chr9 130216823 130216823 1 + G T BLCA 130216824 + 130216804 130216844 41 AGGATGCCGCTCTTCTTCCGGAAGCGGAAACCCAGTGAGGA AGGATGCCGCTCTTCTTCCTGAAGCGGAAACCCAGTGAGGA < 41bp 0.572043563428915 0.84951922459199 NA NA prediction 0.55495132232615 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130216824 chr9:130216823 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16938 0 0 1 0 1 LRSAM1 chr9:130216878 5'GT 130216878 Upstream 56bp 16097 chr15 68118961 68118961 1 + G T UCEC 68118962 + 68118942 68118982 41 AACTGAGCCATGCTTGGGAGGACGTCAAGGCCATGTTTAAT AACTGAGCCATGCTTGGGATGACGTCAAGGCCATGTTTAAT < 41bp 0.567647202910517 0.845115010090151 NA NA prediction 0.554935614359269 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68118962 chr15:68118961 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_16940 0 0 0 0 1 SKOR1 chr15:68118964 5'GT 68118964 Upstream 4bp 16098 chr1 154479769 154479769 1 + G T UCEC 154479770 + 154479750 154479790 41 TAAACTGTTTGGGAAGAATGGAGTGTTGGAGGAGCAGAAAT TAAACTGTTTGGGAAGAATTGAGTGTTGGAGGAGCAGAAAT < 41bp 0.459915566052956 0.777466071622051 NA NA prediction 0.554932143244102 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154479770 chr1:154479769 stopgain 0.009 0 20 hm7G_associated_SNPs_16941 0 0 0 0 2 TDRD10 chr1:154479717 3'AG 154479717 Downstream 53bp 16099 chr1 154479769 154479769 1 + G T UCEC 154479770 + 154479750 154479790 41 TAAACTGTTTGGGAAGAATGGAGTGTTGGAGGAGCAGAAAT TAAACTGTTTGGGAAGAATTGAGTGTTGGAGGAGCAGAAAT < 41bp 0.459915566052956 0.777466071622051 NA NA prediction 0.554932143244102 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154479770 chr1:154479769 stopgain 0.009 0 20 hm7G_associated_SNPs_16941 0 0 0 0 2 TDRD10 chr1:154479796 5'GT 154479796 Upstream 28bp 16100 chr11 118452208 118452208 1 + G T UCEC 118452209 + 118452189 118452229 41 GAAGATTTGGAGACCCTAAGGCTCTTCTCAAGAGTGGTAAG GAAGATTTGGAGACCCTAATGCTCTTCTCAAGAGTGGTAAG < 41bp 0.460444995221121 0.777461280690518 NA NA prediction 0.554922561381035 Functional Gain - ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118452209 chr11:118452208 nonsynonymous SNV 0.777 4 20 hm7G_associated_SNPs_16942 0 0 1 0 1 ARCN1 chr11:118452224 5'GT 118452224 Upstream 17bp 16101 chr12 88566473 88566473 1 + G T COAD 88566474 + 88566454 88566494 41 ATTATATGTTCCCAGCATGGGGTTCTGTATTTTGGTAGCCC ATTATATGTTCCCAGCATGTGGTTCTGTATTTTGGTAGCCC < 41bp 0.466889460770275 0.7774542069208 NA NA prediction 0.554908413841599 Functional Gain - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88566474 chr12:88566473 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16943 0 0 1 0 2 TMTC3 chr12:88566374 3'AG 88566374 Downstream 100bp 16102 chr12 88566473 88566473 1 + G T COAD 88566474 + 88566454 88566494 41 ATTATATGTTCCCAGCATGGGGTTCTGTATTTTGGTAGCCC ATTATATGTTCCCAGCATGTGGTTCTGTATTTTGGTAGCCC < 41bp 0.466889460770275 0.7774542069208 NA NA prediction 0.554908413841599 Functional Gain - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88566474 chr12:88566473 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_16943 0 0 1 0 2 TMTC3 chr12:88566522 5'GT 88566522 Upstream 50bp 16103 chr8 133823337 133823337 1 + G T LUAD 133823338 + 133823318 133823358 41 TTGATGGTGCTGAAAAAAAGGAAGACTACAATGAAACAGCT TTGATGGTGCTGAAAAAAATGAAGACTACAATGAAACAGCT < 41bp 0.552635796373687 0.830087003407449 NA NA prediction 0.554902414067525 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133823338 chr8:133823337 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16944 0 0 1 0 2 PHF20L1 chr8:133823291 3'AG 133823291 Downstream 47bp 16104 chr8 133823337 133823337 1 + G T LUAD 133823338 + 133823318 133823358 41 TTGATGGTGCTGAAAAAAAGGAAGACTACAATGAAACAGCT TTGATGGTGCTGAAAAAAATGAAGACTACAATGAAACAGCT < 41bp 0.552635796373687 0.830087003407449 NA NA prediction 0.554902414067525 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133823338 chr8:133823337 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16944 0 0 1 0 2 PHF20L1 chr8:133823373 5'GT 133823373 Upstream 37bp 16105 chr20 30193562 30193562 1 + G T CESC 30193563 + 30193543 30193583 41 CCGGGGGCCGAGGGCTGCCGGTCCGGGCTCCGCTCAGCACC CCGGGGGCCGAGGGCTGCCTGTCCGGGCTCCGCTCAGCACC < 41bp 0.474688877803221 0.777438268980379 NA NA prediction 0.554876537960759 Functional Gain - ID1 ENSG00000125968 CDS Human protein_coding chr20:30193563 chr20:30193562 synonymous SNV . 0 20 hm7G_associated_SNPs_16946 0 0 1 0 1 ID1 chr20:30193616 5'GT 30193616 Upstream 55bp 16106 chr6 24503505 24503505 1 + G T UCEC 24503506 + 24503486 24503526 41 TTTAGGGAAAGCCACTGAAGGAGGCACATGGAGAAATTCTC TTTAGGGAAAGCCACTGAATGAGGCACATGGAGAAATTCTC < 41bp 0.567941282330863 0.845373350286177 NA NA prediction 0.554864135910628 Functional Gain - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24503506 chr6:24503505 nonsynonymous SNV 0.868 2 20 hm7G_associated_SNPs_16948 0 0 0 0 1 ALDH5A1 chr6:24503491 3'AG 24503491 Downstream 15bp 16107 chr20 62152873 62152873 1 + G T OV 62152874 + 62152854 62152894 41 CTCCTCTCCAGGCCGCCTGGGTTCCACTTCCAGCAACAGCT CTCCTCTCCAGGCCGCCTGTGTTCCACTTCCAGCAACAGCT < 41bp 0.454848836820881 0.777413572849217 NA NA prediction 0.554827145698433 Functional Gain - PPDPF ENSG00000125534 CDS Human protein_coding chr20:62152874 chr20:62152873 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_16951 0 0 1 0 2 PPDPF chr20:62152865 3'AG 62152865 Downstream 9bp 16108 chr20 62152873 62152873 1 + G T OV 62152874 + 62152854 62152894 41 CTCCTCTCCAGGCCGCCTGGGTTCCACTTCCAGCAACAGCT CTCCTCTCCAGGCCGCCTGTGTTCCACTTCCAGCAACAGCT < 41bp 0.454848836820881 0.777413572849217 NA NA prediction 0.554827145698433 Functional Gain - PPDPF ENSG00000125534 CDS Human protein_coding chr20:62152874 chr20:62152873 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_16951 0 0 1 0 2 PPDPF chr20:62152942 5'GT 62152942 Upstream 70bp 16109 chr1 47278192 47278192 1 + G T COAD 47278193 + 47278173 47278213 41 GGCCTGCTGGTTCTTGAGGGGCCCAAGTGGTTGCAGCACCG GGCCTGCTGGTTCTTGAGGTGCCCAAGTGGTTGCAGCACCG < 41bp 0.571382326856771 0.848794632026359 NA NA prediction 0.554824610339175 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47278193 chr1:47278192 nonsynonymous SNV 0.004 4 20 hm7G_associated_SNPs_16952 0 0 0 0 1 CYP4B1 chr1:47278168 3'AG 47278168 Downstream 25bp 16110 chrX 54570701 54570701 1 + G T OV 54570702 + 54570682 54570722 41 AAATGGCTGGATTACCTTCGGAATGAGTTGCCAACCGTGGC AAATGGCTGGATTACCTTCTGAATGAGTTGCCAACCGTGGC < 41bp 0.565826412190909 0.843236995919312 NA NA prediction 0.554821167456806 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54570702 chrX:54570701 nonsynonymous SNV 0.584 1 20 hm7G_associated_SNPs_16953 0 0 1 0 2 GNL3L chrX:54570656 3'AG 54570656 Downstream 46bp 16111 chrX 54570701 54570701 1 + G T OV 54570702 + 54570682 54570722 41 AAATGGCTGGATTACCTTCGGAATGAGTTGCCAACCGTGGC AAATGGCTGGATTACCTTCTGAATGAGTTGCCAACCGTGGC < 41bp 0.565826412190909 0.843236995919312 NA NA prediction 0.554821167456806 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54570702 chrX:54570701 nonsynonymous SNV 0.584 1 20 hm7G_associated_SNPs_16953 0 0 1 0 2 GNL3L chrX:54570759 5'GT 54570759 Upstream 59bp 16112 chr7 100459495 100459495 1 + G T LUSC 100459496 + 100459476 100459516 41 AACCAGCTTAAGAAGGGGGGGCTGTATGTGCTGGGCCACGT AACCAGCTTAAGAAGGGGGTGCTGTATGTGCTGGGCCACGT < 41bp 0.576832764878394 0.854215936936557 NA NA prediction 0.554766344116326 Functional Gain - SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100459496 chr7:100459495 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_16954 0 0 1 0 1 SLC12A9 chr7:100459533 5'GT 100459533 Upstream 39bp 16113 chrX 130219638 130219638 1 + G T LUAD 130219639 + 130219619 130219659 41 CCTGCCACAGTGATACCCTGGAGCGTCTGCTGAAGGCCCTG CCTGCCACAGTGATACCCTTGAGCGTCTGCTGAAGGCCCTG < 41bp 0.433923024991706 0.777377415823443 NA NA prediction 0.554754831646885 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219639 chrX:130219638 synonymous SNV . 0 20 hm7G_associated_SNPs_16955 0 0 0 0 2 ARHGAP36 chrX:130219562 3'AG 130219562 Downstream 77bp 16114 chrX 130219638 130219638 1 + G T LUAD 130219639 + 130219619 130219659 41 CCTGCCACAGTGATACCCTGGAGCGTCTGCTGAAGGCCCTG CCTGCCACAGTGATACCCTTGAGCGTCTGCTGAAGGCCCTG < 41bp 0.433923024991706 0.777377415823443 NA NA prediction 0.554754831646885 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219639 chrX:130219638 synonymous SNV . 0 20 hm7G_associated_SNPs_16955 0 0 0 0 2 ARHGAP36 chrX:130219710 5'GT 130219710 Upstream 73bp 16115 chr5 176524383 176524383 1 + G T LUAD 176524384 + 176524364 176524404 41 CGCTGGACAAGGTCCTGCTGGCCGTCTCTGAGGAGGTACAG CGCTGGACAAGGTCCTGCTTGCCGTCTCTGAGGAGGTACAG < 41bp 0.436755789633575 0.777372824832837 NA NA prediction 0.554745649665674 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524384 chr5:176524383 synonymous SNV . 0 20 hm7G_associated_SNPs_16957 0 0 1 0 2 FGFR4 chr5:176524293 3'AG 176524293 Downstream 91bp 16116 chr5 176524383 176524383 1 + G T LUAD 176524384 + 176524364 176524404 41 CGCTGGACAAGGTCCTGCTGGCCGTCTCTGAGGAGGTACAG CGCTGGACAAGGTCCTGCTTGCCGTCTCTGAGGAGGTACAG < 41bp 0.436755789633575 0.777372824832837 NA NA prediction 0.554745649665674 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176524384 chr5:176524383 synonymous SNV . 0 20 hm7G_associated_SNPs_16957 0 0 1 0 2 FGFR4 chr5:176524398 5'GT 176524398 Upstream 16bp 16117 chr19 52937293 52937293 1 + G T LUSC 52937294 + 52937274 52937314 41 GGGCAGAAAGCTTTATACAGGGACGTGATGTTAGAGAACTA GGGCAGAAAGCTTTATACATGGACGTGATGTTAGAGAACTA < 41bp 0.456272173051348 0.777351654377309 NA NA prediction 0.554703308754619 Functional Gain - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52937294 chr19:52937293 nonsynonymous SNV 0.252 3 20 hm7G_associated_SNPs_16960 0 0 0 0 3 ZNF534 chr19:52937208 3'AG 52937208 Downstream 86bp 16118 chr19 52937293 52937293 1 + G T LUSC 52937294 + 52937274 52937314 41 GGGCAGAAAGCTTTATACAGGGACGTGATGTTAGAGAACTA GGGCAGAAAGCTTTATACATGGACGTGATGTTAGAGAACTA < 41bp 0.456272173051348 0.777351654377309 NA NA prediction 0.554703308754619 Functional Gain - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52937294 chr19:52937293 nonsynonymous SNV 0.252 3 20 hm7G_associated_SNPs_16960 0 0 0 0 3 ZNF534 chr19:52937334 5'GT 52937334 Upstream 42bp 16119 chr19 52937293 52937293 1 + G T LUSC 52937294 + 52937274 52937314 41 GGGCAGAAAGCTTTATACAGGGACGTGATGTTAGAGAACTA GGGCAGAAAGCTTTATACATGGACGTGATGTTAGAGAACTA < 41bp 0.456272173051348 0.777351654377309 NA NA prediction 0.554703308754619 Functional Gain - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52937294 chr19:52937293 nonsynonymous SNV 0.252 3 20 hm7G_associated_SNPs_16960 0 0 0 0 3 ZNF534 chr19:52937373 5'GT 52937373 Upstream 81bp 16120 chr1 6149082 6149082 1 + G T COAD 6149083 + 6149063 6149103 41 TCCAGGGCGGAGACGGAGCGGGGCCTGTCCAGGAAGCACAT TCCAGGGCGGAGACGGAGCTGGGCCTGTCCAGGAAGCACAT < 41bp 0.436033227401527 0.777318420598672 NA NA prediction 0.554636841197344 Functional Gain - KCNAB2 ENSG00000069424 CDS Human protein_coding chr1:6149083 chr1:6149082 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_16961 0 0 1 0 2 KCNAB2 chr1:6149068 3'AG 6149068 Downstream 15bp 16121 chr1 6149082 6149082 1 + G T COAD 6149083 + 6149063 6149103 41 TCCAGGGCGGAGACGGAGCGGGGCCTGTCCAGGAAGCACAT TCCAGGGCGGAGACGGAGCTGGGCCTGTCCAGGAAGCACAT < 41bp 0.436033227401527 0.777318420598672 NA NA prediction 0.554636841197344 Functional Gain - KCNAB2 ENSG00000069424 CDS Human protein_coding chr1:6149083 chr1:6149082 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_16961 0 0 1 0 2 KCNAB2 chr1:6149111 5'GT 6149111 Upstream 30bp 16122 chr11 47256176 47256176 1 + G T UCEC 47256177 + 47256157 47256197 41 TAGCCGAATGGTGGTCACAGGAGACAACGTGGGGAACGTGA TAGCCGAATGGTGGTCACATGAGACAACGTGGGGAACGTGA < 41bp 0.550813839852207 0.828131126643199 NA NA prediction 0.554634573581985 Functional Gain - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256177 chr11:47256176 stopgain 1.000 1 20 hm7G_associated_SNPs_16962 0 0 1 0 2 DDB2 chr11:47256124 3'AG 47256124 Downstream 53bp 16123 chr11 47256176 47256176 1 + G T UCEC 47256177 + 47256157 47256197 41 TAGCCGAATGGTGGTCACAGGAGACAACGTGGGGAACGTGA TAGCCGAATGGTGGTCACATGAGACAACGTGGGGAACGTGA < 41bp 0.550813839852207 0.828131126643199 NA NA prediction 0.554634573581985 Functional Gain - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47256177 chr11:47256176 stopgain 1.000 1 20 hm7G_associated_SNPs_16962 0 0 1 0 2 DDB2 chr11:47256223 5'GT 47256223 Upstream 48bp 16124 chr1 150931734 150931734 1 + G T LUSC 150931735 + 150931715 150931755 41 CAACATGGACTACAAGTTCGGCTACAGCTATTCAAGACACA CAACATGGACTACAAGTTCTGCTACAGCTATTCAAGACACA < 41bp 0.561241658114179 0.838520323600982 NA NA prediction 0.554557330973607 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150931735 chr1:150931734 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_16965 0 0 1 0 1 SETDB1 chr1:150931823 5'GT 150931823 Upstream 90bp 16125 chr19 55798406 55798406 1 + G T LUAD 55798407 + 55798387 55798427 41 TCGGGGTCCACTGCATCACGGGTCAGAAGGTCGCCATCAAG TCGGGGTCCACTGCATCACTGGTCAGAAGGTCGCCATCAAG < 41bp 0.589872848118602 0.867133983557827 NA NA prediction 0.554522270878451 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55798407 chr19:55798406 synonymous SNV . 0 20 hm7G_associated_SNPs_16966 0 0 1 0 2 BRSK1 chr19:55798375 3'AG 55798375 Downstream 32bp 16126 chr19 55798406 55798406 1 + G T LUAD 55798407 + 55798387 55798427 41 TCGGGGTCCACTGCATCACGGGTCAGAAGGTCGCCATCAAG TCGGGGTCCACTGCATCACTGGTCAGAAGGTCGCCATCAAG < 41bp 0.589872848118602 0.867133983557827 NA NA prediction 0.554522270878451 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55798407 chr19:55798406 synonymous SNV . 0 20 hm7G_associated_SNPs_16966 0 0 1 0 2 BRSK1 chr19:55798469 5'GT 55798469 Upstream 64bp 16127 chr8 81426206 81426206 1 + G T LUAD 81426207 + 81426187 81426227 41 ATGTGAATGCAAATTTATTGGCTGAAGCTGGCACTAGTCAA ATGTGAATGCAAATTTATTTGCTGAAGCTGGCACTAGTCAA < 41bp 0.565781804307247 0.843027238082583 NA NA prediction 0.554490867550672 Functional Gain - ZBTB10 ENSG00000205189 CDS Human protein_coding chr8:81426207 chr8:81426206 nonsynonymous SNV 0.952 1 20 hm7G_associated_SNPs_16967 0 0 1 0 3 ZBTB10 chr8:81426145 3'AG 81426145 Downstream 62bp 16128 chr8 81426206 81426206 1 + G T LUAD 81426207 + 81426187 81426227 41 ATGTGAATGCAAATTTATTGGCTGAAGCTGGCACTAGTCAA ATGTGAATGCAAATTTATTTGCTGAAGCTGGCACTAGTCAA < 41bp 0.565781804307247 0.843027238082583 NA NA prediction 0.554490867550672 Functional Gain - ZBTB10 ENSG00000205189 CDS Human protein_coding chr8:81426207 chr8:81426206 nonsynonymous SNV 0.952 1 20 hm7G_associated_SNPs_16967 0 0 1 0 3 ZBTB10 chr8:81426151 3'AG 81426151 Downstream 56bp 16129 chr8 81426206 81426206 1 + G T LUAD 81426207 + 81426187 81426227 41 ATGTGAATGCAAATTTATTGGCTGAAGCTGGCACTAGTCAA ATGTGAATGCAAATTTATTTGCTGAAGCTGGCACTAGTCAA < 41bp 0.565781804307247 0.843027238082583 NA NA prediction 0.554490867550672 Functional Gain - ZBTB10 ENSG00000205189 CDS Human protein_coding chr8:81426207 chr8:81426206 nonsynonymous SNV 0.952 1 20 hm7G_associated_SNPs_16967 0 0 1 0 3 ZBTB10 chr8:81426243 5'GT 81426243 Upstream 38bp 16130 chr3 186333536 186333536 1 + G T LUSC 186333537 + 186333517 186333557 41 AAACCACCTGCCATGTGCTGGACCCCACCCCTGTGGCAAGA AAACCACCTGCCATGTGCTTGACCCCACCCCTGTGGCAAGA < 41bp 0.441973399779832 0.777238501281198 NA NA prediction 0.554477002562396 Functional Gain - AHSG ENSG00000145192 CDS Human protein_coding chr3:186333537 chr3:186333536 synonymous SNV . 0 20 hm7G_associated_SNPs_16969 0 0 1 0 2 AHSG chr3:186333474 3'AG 186333474 Downstream 63bp 16131 chr3 186333536 186333536 1 + G T LUSC 186333537 + 186333517 186333557 41 AAACCACCTGCCATGTGCTGGACCCCACCCCTGTGGCAAGA AAACCACCTGCCATGTGCTTGACCCCACCCCTGTGGCAAGA < 41bp 0.441973399779832 0.777238501281198 NA NA prediction 0.554477002562396 Functional Gain - AHSG ENSG00000145192 CDS Human protein_coding chr3:186333537 chr3:186333536 synonymous SNV . 0 20 hm7G_associated_SNPs_16969 0 0 1 0 2 AHSG chr3:186333584 5'GT 186333584 Upstream 49bp 16132 chr8 39836623 39836623 1 + G T LUSC 39836624 + 39836604 39836644 41 CAGTTCCTGAAGGGTCACCGGGAGCAGCGCCTGGCCCACCT CAGTTCCTGAAGGGTCACCTGGAGCAGCGCCTGGCCCACCT < 41bp 0.574903773269165 0.8521300376617 NA NA prediction 0.554452528785071 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39836624 chr8:39836623 nonsynonymous SNV 0.922 2 20 hm7G_associated_SNPs_16971 0 0 0 0 2 IDO2 chr8:39836586 3'AG 39836586 Downstream 38bp 16133 chr8 39836623 39836623 1 + G T LUSC 39836624 + 39836604 39836644 41 CAGTTCCTGAAGGGTCACCGGGAGCAGCGCCTGGCCCACCT CAGTTCCTGAAGGGTCACCTGGAGCAGCGCCTGGCCCACCT < 41bp 0.574903773269165 0.8521300376617 NA NA prediction 0.554452528785071 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39836624 chr8:39836623 nonsynonymous SNV 0.922 2 20 hm7G_associated_SNPs_16971 0 0 0 0 2 IDO2 chr8:39836705 5'GT 39836705 Upstream 83bp 16134 chr12 88548071 88548071 1 + G T UCEC 88548072 + 88548052 88548092 41 TTTTCCTTTCTAGGTAACAGGAGTTGTTGGAAGAGCAGAAC TTTTCCTTTCTAGGTAACATGAGTTGTTGGAAGAGCAGAAC < 41bp 0.528602673182916 0.805820003662438 NA NA prediction 0.554434660959044 Functional Gain - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88548072 chr12:88548071 stopgain 0.988 1 20 hm7G_associated_SNPs_16973 0 0 1 0 2 TMTC3 chr12:88548065 3'AG 88548065 Downstream 7bp 16135 chr12 88548071 88548071 1 + G T UCEC 88548072 + 88548052 88548092 41 TTTTCCTTTCTAGGTAACAGGAGTTGTTGGAAGAGCAGAAC TTTTCCTTTCTAGGTAACATGAGTTGTTGGAAGAGCAGAAC < 41bp 0.528602673182916 0.805820003662438 NA NA prediction 0.554434660959044 Functional Gain - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88548072 chr12:88548071 stopgain 0.988 1 20 hm7G_associated_SNPs_16973 0 0 1 0 2 TMTC3 chr12:88548164 5'GT 88548164 Upstream 94bp 16136 chr16 31273080 31273080 1 + G T LUAD 31273081 + 31273061 31273101 41 CCTTCCAAGAGAACGCAAGGGGCTTCGGGCAGAGCGTGGTC CCTTCCAAGAGAACGCAAGTGGCTTCGGGCAGAGCGTGGTC < 41bp 0.430755113262405 0.777209247574484 NA NA prediction 0.554418495148969 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31273081 chr16:31273080 nonsynonymous SNV 0.134 0 20 hm7G_associated_SNPs_16974 0 0 0 0 2 ITGAM chr16:31273013 3'AG 31273013 Downstream 68bp 16137 chr16 31273080 31273080 1 + G T LUAD 31273081 + 31273061 31273101 41 CCTTCCAAGAGAACGCAAGGGGCTTCGGGCAGAGCGTGGTC CCTTCCAAGAGAACGCAAGTGGCTTCGGGCAGAGCGTGGTC < 41bp 0.430755113262405 0.777209247574484 NA NA prediction 0.554418495148969 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31273081 chr16:31273080 nonsynonymous SNV 0.134 0 20 hm7G_associated_SNPs_16974 0 0 0 0 2 ITGAM chr16:31273118 5'GT 31273118 Upstream 39bp 16138 chr1 45266806 45266806 1 + G T CHOL 45266807 + 45266787 45266827 41 ACAACATCTACATTTTCTTGGAGCTCTGCAGCCGAAAGGTG ACAACATCTACATTTTCTTTGAGCTCTGCAGCCGAAAGGTG < 41bp 0.443299987163131 0.777194988201774 NA NA prediction 0.554389976403549 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45266807 chr1:45266806 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16975 0 0 1 1 2 PLK3 chr1:45266708 3'AG 45266708 Downstream 99bp 16139 chr1 45266806 45266806 1 + G T CHOL 45266807 + 45266787 45266827 41 ACAACATCTACATTTTCTTGGAGCTCTGCAGCCGAAAGGTG ACAACATCTACATTTTCTTTGAGCTCTGCAGCCGAAAGGTG < 41bp 0.443299987163131 0.777194988201774 NA NA prediction 0.554389976403549 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45266807 chr1:45266806 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_16975 0 0 1 1 2 PLK3 chr1:45266824 5'GT 45266824 Upstream 19bp 16140 chr1 47610098 47610098 1 + G T GBM 47610099 + 47610079 47610119 41 GAGAAGATCAAGAGGAAGAGGCACTTGGATTTTCTGGACAT GAGAAGATCAAGAGGAAGATGCACTTGGATTTTCTGGACAT < 41bp 0.57167675516072 0.848853684600716 NA NA prediction 0.554353858879993 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610099 chr1:47610098 nonsynonymous SNV 0.024 4 20 hm7G_associated_SNPs_16976 0 0 0 0 2 CYP4A22 chr1:47610029 3'AG 47610029 Downstream 70bp 16141 chr1 47610098 47610098 1 + G T GBM 47610099 + 47610079 47610119 41 GAGAAGATCAAGAGGAAGAGGCACTTGGATTTTCTGGACAT GAGAAGATCAAGAGGAAGATGCACTTGGATTTTCTGGACAT < 41bp 0.57167675516072 0.848853684600716 NA NA prediction 0.554353858879993 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610099 chr1:47610098 nonsynonymous SNV 0.024 4 20 hm7G_associated_SNPs_16976 0 0 0 0 2 CYP4A22 chr1:47610135 5'GT 47610135 Upstream 38bp 16142 chr17 27064724 27064724 1 + G T UCEC 27064725 + 27064705 27064745 41 CGTGGCCCCCAGCAACACAGGGAGCAGGACCACCAGTGTCC CGTGGCCCCCAGCAACACATGGAGCAGGACCACCAGTGTCC < 41bp 0.588271496044764 0.865434466614853 NA NA prediction 0.554325941140177 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064725 chr17:27064724 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_16980 0 0 1 0 2 NEK8 chr17:27064693 3'AG 27064693 Downstream 32bp 16143 chr17 27064724 27064724 1 + G T UCEC 27064725 + 27064705 27064745 41 CGTGGCCCCCAGCAACACAGGGAGCAGGACCACCAGTGTCC CGTGGCCCCCAGCAACACATGGAGCAGGACCACCAGTGTCC < 41bp 0.588271496044764 0.865434466614853 NA NA prediction 0.554325941140177 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064725 chr17:27064724 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_16980 0 0 1 0 2 NEK8 chr17:27064754 5'GT 27064754 Upstream 31bp 16144 chr10 72326434 72326434 1 + G T LUAD 72326435 + 72326415 72326455 41 TTCTCCAGGCTGCGCTACCGGTGGCAGGAGCAGAGCTGCAG TTCTCCAGGCTGCGCTACCTGTGGCAGGAGCAGAGCTGCAG < 41bp 0.473389522247855 0.777162665471303 NA NA prediction 0.554325330942607 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72326435 chr10:72326434 nonsynonymous SNV 0.846 4 20 hm7G_associated_SNPs_16981 0 0 0 0 1 PALD1 chr10:72326337 3'AG 72326337 Downstream 98bp 16145 chr2 233527526 233527526 1 + G T LUAD 233527527 + 233527507 233527547 41 TGCAGGTATGACGCTGGGCGGGATGGCTTCATCGACCTGAT TGCAGGTATGACGCTGGGCTGGATGGCTTCATCGACCTGAT < 41bp 0.572537282634567 0.849698749362526 NA NA prediction 0.554322933455919 Functional Gain - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233527527 chr2:233527526 nonsynonymous SNV 0.738 0 20 hm7G_associated_SNPs_16982 0 0 1 0 1 EFHD1 chr2:233527512 3'AG 233527512 Downstream 15bp 16146 chr11 10615730 10615730 1 + G T COAD 10615731 + 10615711 10615751 41 CATGGACCGTGCCGTGCGAGGGACCCCATCTTCTGCAGCAG CATGGACCGTGCCGTGCGATGGACCCCATCTTCTGCAGCAG < 41bp 0.455918409899854 0.777143821628679 NA NA prediction 0.554287643257359 Functional Gain - MRVI1 ENSG00000072952 CDS Human antisense chr11:10615731 chr11:10615730 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_16985 0 0 0 0 2 MRVI1-AS1 chr11:10615664 3'AG 10615664 Downstream 67bp 16147 chr11 10615730 10615730 1 + G T COAD 10615731 + 10615711 10615751 41 CATGGACCGTGCCGTGCGAGGGACCCCATCTTCTGCAGCAG CATGGACCGTGCCGTGCGATGGACCCCATCTTCTGCAGCAG < 41bp 0.455918409899854 0.777143821628679 NA NA prediction 0.554287643257359 Functional Gain - MRVI1 ENSG00000072952 CDS Human antisense chr11:10615731 chr11:10615730 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_16985 0 0 0 0 2 MRVI1-AS1 chr11:10615775 5'GT 10615775 Upstream 46bp 16148 chrX 147019671 147019671 1 + G T UCEC 147019672 + 147019652 147019692 41 CCCAGAAACCTGAACTCAAGGCTTGGCAGGTAGGAAAACAT CCCAGAAACCTGAACTCAATGCTTGGCAGGTAGGAAAACAT < 41bp 0.481139321698059 0.777140880775477 NA NA prediction 0.554281761550955 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147019672 chrX:147019671 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_16986 0 0 1 0 2 FMR1 chrX:147019618 3'AG 147019618 Downstream 54bp 16149 chrX 147019671 147019671 1 + G T UCEC 147019672 + 147019652 147019692 41 CCCAGAAACCTGAACTCAAGGCTTGGCAGGTAGGAAAACAT CCCAGAAACCTGAACTCAATGCTTGGCAGGTAGGAAAACAT < 41bp 0.481139321698059 0.777140880775477 NA NA prediction 0.554281761550955 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147019672 chrX:147019671 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_16986 0 0 1 0 2 FMR1 chrX:147019680 5'GT 147019680 Upstream 10bp 16150 chr11 75507509 75507509 1 + G T SKCM 75507510 + 75507490 75507530 41 AAGAAGTTCCCAGGCATACGGCCTTACCTGGCTACACTGGC AAGAAGTTCCCAGGCATACTGCCTTACCTGGCTACACTGGC < 41bp 0.578290583404992 0.855401952713451 NA NA prediction 0.554222738616919 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75507510 chr11:75507509 nonsynonymous SNV 0.940 2 20 hm7G_associated_SNPs_16988 0 0 0 0 1 DGAT2 chr11:75507577 5'GT 75507577 Upstream 69bp 16151 chr10 96317931 96317931 1 + G T UCEC 96317932 + 96317912 96317952 41 AAAAATTGGAGAGAAAAAAGGAGTCTTTAAAAGTTAAAAAG AAAAATTGGAGAGAAAAAATGAGTCTTTAAAAGTTAAAAAG < 41bp 0.482651576871115 0.777108418360947 NA NA prediction 0.554216836721894 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96317932 chr10:96317931 nonsynonymous SNV 0.904 1 20 hm7G_associated_SNPs_16989 0 0 1 0 2 HELLS chr10:96317896 3'AG 96317896 Downstream 36bp 16152 chr10 96317931 96317931 1 + G T UCEC 96317932 + 96317912 96317952 41 AAAAATTGGAGAGAAAAAAGGAGTCTTTAAAAGTTAAAAAG AAAAATTGGAGAGAAAAAATGAGTCTTTAAAAGTTAAAAAG < 41bp 0.482651576871115 0.777108418360947 NA NA prediction 0.554216836721894 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96317932 chr10:96317931 nonsynonymous SNV 0.904 1 20 hm7G_associated_SNPs_16989 0 0 1 0 2 HELLS chr10:96317952 5'GT 96317952 Upstream 22bp 16153 chr1 172526830 172526830 1 + G T UCEC 172526831 + 172526811 172526851 41 ATCATCTTCACATGGTAAAGGAAAGATAACAAAATCAGAAT ATCATCTTCACATGGTAAATGAAAGATAACAAAATCAGAAT < 41bp 0.475064140980102 0.777108363736172 NA NA prediction 0.554216727472344 Functional Gain - SUCO ENSG00000094975 CDS Human protein_coding chr1:172526831 chr1:172526830 stopgain 1.000 1 20 hm7G_associated_SNPs_16990 0 0 1 0 1 SUCO chr1:172526784 3'AG 172526784 Downstream 47bp 16154 chr17 73745075 73745075 1 + G T SKCM 73745076 + 73745056 73745096 41 GCTCAGCAACCCTAAGTTTGGGGCCCACCTGGGCCAGCCCC GCTCAGCAACCCTAAGTTTTGGGCCCACCTGGGCCAGCCCC < 41bp 0.433715698673878 0.777090279053657 NA NA prediction 0.554180558107314 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73745076 chr17:73745075 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_16992 0 0 0 0 1 ITGB4 chr17:73745126 5'GT 73745126 Upstream 52bp 16155 chr7 96637053 96637053 1 + G T OV 96637054 + 96637034 96637074 41 ATTCCAGCCTGCAGCTCCAGGCTTTAAACCATCGCTTTCAG ATTCCAGCCTGCAGCTCCATGCTTTAAACCATCGCTTTCAG < 41bp 0.567858066707002 0.844946756027496 NA NA prediction 0.554177378640988 Functional Gain - DLX6 ENSG00000006377 CDS Human protein_coding chr7:96637054 chr7:96637053 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_16993 0 0 0 0 1 DLX6 chr7:96637143 5'GT 96637143 Upstream 91bp 16156 chrX 115588928 115588928 1 + G T UCEC 115588929 + 115588909 115588949 41 AAAAATAATTCAGGCTAAAGGAAACATCTTTCAAGTGAGTG AAAAATAATTCAGGCTAAATGAAACATCTTTCAAGTGAGTG < 41bp 0.517912148666474 0.79499449249881 NA NA prediction 0.554164687664673 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115588929 chrX:115588928 stopgain 0.995 1 20 hm7G_associated_SNPs_16995 0 0 1 0 1 SLC6A14 chrX:115588942 5'GT 115588942 Upstream 15bp 16157 chr6 109560566 109560566 1 + G T UCEC 109560567 + 109560547 109560587 41 TCATGGAGTTCTCGGAAGTGGAGAACCAGGATGACTACTAC TCATGGAGTTCTCGGAAGTTGAGAACCAGGATGACTACTAC < 41bp 0.568307141244438 0.84536858143789 NA NA prediction 0.554122880386904 Functional Gain - C6orf183 ENSG00000243587 CDS Human other chr6:109560567 chr6:109560566 unknown . 0 20 hm7G_associated_SNPs_16996 0 0 0 0 1 C6orf183 chr6:109560531 3'AG 109560531 Downstream 36bp 16158 chr7 35943889 35943889 1 + G T UCEC 35943890 + 35943870 35943910 41 GGAAAAGAACAAGAAGAAAGGGAAGATCTTTTAAACTCTCT GGAAAAGAACAAGAAGAAATGGAAGATCTTTTAAACTCTCT < 41bp 0.518299404623047 0.795359020699811 NA NA prediction 0.554119232153529 Functional Gain - SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35943890 chr7:35943889 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_16997 0 0 1 0 1 SEPT7 chr7:35943864 3'AG 35943864 Downstream 26bp 16159 chrX 35993994 35993994 1 + G T LUAD 35993995 + 35993975 35994015 41 ATGGCAACCCGTAAACACAGGAAGAGGGATAGCATTTTCTA ATGGCAACCCGTAAACACATGAAGAGGGATAGCATTTTCTA < 41bp 0.53665692362384 0.813711967336141 NA NA prediction 0.554110087424602 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35993995 chrX:35993994 stopgain 0.283 0 20 hm7G_associated_SNPs_16998 0 0 0 0 1 CFAP47 chrX:35994030 5'GT 35994030 Upstream 37bp 16160 chr1 196927038 196927038 1 + G T LUSC 196927039 + 196927019 196927059 41 AGTTTCTGCAGAAAAATGTGGGCCCCCTCCACCTATTGACA AGTTTCTGCAGAAAAATGTTGGCCCCCTCCACCTATTGACA < 41bp 0.467829559978109 0.777014083451957 NA NA prediction 0.554028166903914 Functional Gain - CFHR2 ENSG00000080910 CDS Human protein_coding chr1:196927039 chr1:196927038 nonsynonymous SNV 0.683 3 20 hm7G_associated_SNPs_17004 0 0 0 0 1 CFHR2 chr1:196927021 3'AG 196927021 Downstream 18bp 16161 chr12 57626297 57626297 1 + G T STAD 57626298 + 57626278 57626318 41 GCTCGACTTTTCCGGCCACGGCTCATCATAGCTGGCACCAG GCTCGACTTTTCCGGCCACTGCTCATCATAGCTGGCACCAG < 41bp 0.58108740921096 0.858065765430345 NA NA prediction 0.55395671243877 Functional Gain - SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626298 chr12:57626297 nonsynonymous SNV 0.914 2 20 hm7G_associated_SNPs_17007 0 0 1 0 4 SHMT2 chr12:57626208 3'AG 57626208 Downstream 90bp 16162 chr12 57626297 57626297 1 + G T STAD 57626298 + 57626278 57626318 41 GCTCGACTTTTCCGGCCACGGCTCATCATAGCTGGCACCAG GCTCGACTTTTCCGGCCACTGCTCATCATAGCTGGCACCAG < 41bp 0.58108740921096 0.858065765430345 NA NA prediction 0.55395671243877 Functional Gain - SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626298 chr12:57626297 nonsynonymous SNV 0.914 2 20 hm7G_associated_SNPs_17007 0 0 1 0 4 SHMT2 chr12:57626236 3'AG 57626236 Downstream 62bp 16163 chr12 57626297 57626297 1 + G T STAD 57626298 + 57626278 57626318 41 GCTCGACTTTTCCGGCCACGGCTCATCATAGCTGGCACCAG GCTCGACTTTTCCGGCCACTGCTCATCATAGCTGGCACCAG < 41bp 0.58108740921096 0.858065765430345 NA NA prediction 0.55395671243877 Functional Gain - SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626298 chr12:57626297 nonsynonymous SNV 0.914 2 20 hm7G_associated_SNPs_17007 0 0 1 0 4 SHMT2 chr12:57626266 3'AG 57626266 Downstream 32bp 16164 chr12 57626297 57626297 1 + G T STAD 57626298 + 57626278 57626318 41 GCTCGACTTTTCCGGCCACGGCTCATCATAGCTGGCACCAG GCTCGACTTTTCCGGCCACTGCTCATCATAGCTGGCACCAG < 41bp 0.58108740921096 0.858065765430345 NA NA prediction 0.55395671243877 Functional Gain - SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57626298 chr12:57626297 nonsynonymous SNV 0.914 2 20 hm7G_associated_SNPs_17007 0 0 1 0 4 SHMT2 chr12:57626358 5'GT 57626358 Upstream 62bp 16165 chr3 122001063 122001063 1 + G T LUSC 122001064 + 122001044 122001084 41 TGTGTGGAGTGTCCTGATGGGGAGTATAGTGATGAGACAGG TGTGTGGAGTGTCCTGATGTGGAGTATAGTGATGAGACAGG < 41bp 0.449829243234764 0.77696489952733 NA NA prediction 0.553929799054661 Functional Gain - CASR ENSG00000036828 CDS Human protein_coding chr3:122001064 chr3:122001063 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_17009 0 0 0 0 1 CASR chr3:122001083 5'GT 122001083 Upstream 21bp 16166 chr2 201473783 201473783 1 + G T UCEC 201473784 + 201473764 201473804 41 TAGTCCAGAAGCTTCCAGAGGAGAAGACACAGATGTACCAT TAGTCCAGAAGCTTCCAGATGAGAAGACACAGATGTACCAT < 41bp 0.563899309293656 0.840856628883809 NA NA prediction 0.553914639180306 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201473784 chr2:201473783 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_17011 0 0 0 0 2 AOX1 chr2:201473707 3'AG 201473707 Downstream 77bp 16167 chr2 201473783 201473783 1 + G T UCEC 201473784 + 201473764 201473804 41 TAGTCCAGAAGCTTCCAGAGGAGAAGACACAGATGTACCAT TAGTCCAGAAGCTTCCAGATGAGAAGACACAGATGTACCAT < 41bp 0.563899309293656 0.840856628883809 NA NA prediction 0.553914639180306 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201473784 chr2:201473783 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_17011 0 0 0 0 2 AOX1 chr2:201473858 5'GT 201473858 Upstream 76bp 16168 chr10 12136082 12136082 1 + G T LUAD 12136083 + 12136063 12136103 41 GTCCTTCAGGGAAGCTTGTGGGCTGTGCCATCATCCATGTC GTCCTTCAGGGAAGCTTGTTGGCTGTGCCATCATCCATGTC < 41bp 0.446069729637995 0.77695391850123 NA NA prediction 0.553907837002459 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12136083 chr10:12136082 synonymous SNV . 0 20 hm7G_associated_SNPs_17012 0 0 1 0 1 DHTKD1 chr10:12136072 3'AG 12136072 Downstream 11bp 16169 chr22 30795636 30795636 1 + G T THCA 30795637 + 30795617 30795657 41 TGCCTCTCCCTACAGTTTCGGGAGAATGTCCAGGATGTGCT TGCCTCTCCCTACAGTTTCTGGAGAATGTCCAGGATGTGCT < 41bp 0.459493257987027 0.776928746230592 NA NA prediction 0.553857492461185 Functional Gain - SEC14L2 ENSG00000100003 CDS Human protein_coding chr22:30795637 chr22:30795636 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17014 0 0 1 0 2 SEC14L2 chr22:30795632 3'AG 30795632 Downstream 5bp 16170 chr22 30795636 30795636 1 + G T THCA 30795637 + 30795617 30795657 41 TGCCTCTCCCTACAGTTTCGGGAGAATGTCCAGGATGTGCT TGCCTCTCCCTACAGTTTCTGGAGAATGTCCAGGATGTGCT < 41bp 0.459493257987027 0.776928746230592 NA NA prediction 0.553857492461185 Functional Gain - SEC14L2 ENSG00000100003 CDS Human protein_coding chr22:30795637 chr22:30795636 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17014 0 0 1 0 2 SEC14L2 chr22:30795707 5'GT 30795707 Upstream 72bp 16171 chr13 27828370 27828370 1 + G T SKCM 27828371 + 27828351 27828391 41 TTGTAGGAGTTGTTCCTTTGGCCACATATATGCGAATCTAT TTGTAGGAGTTGTTCCTTTTGCCACATATATGCGAATCTAT < 41bp 0.557481765016242 0.834406851111301 NA NA prediction 0.553850172190119 Functional Gain - RPL21 ENSG00000122026 CDS Human protein_coding chr13:27828371 chr13:27828370 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17015 0 0 1 0 2 RPL21 chr13:27828357 3'AG 27828357 Downstream 14bp 16172 chr13 27828370 27828370 1 + G T SKCM 27828371 + 27828351 27828391 41 TTGTAGGAGTTGTTCCTTTGGCCACATATATGCGAATCTAT TTGTAGGAGTTGTTCCTTTTGCCACATATATGCGAATCTAT < 41bp 0.557481765016242 0.834406851111301 NA NA prediction 0.553850172190119 Functional Gain - RPL21 ENSG00000122026 CDS Human protein_coding chr13:27828371 chr13:27828370 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17015 0 0 1 0 2 RPL21 chr13:27828418 5'GT 27828418 Upstream 49bp 16173 chr17 58236675 58236675 1 + G T LUAD 58236676 + 58236656 58236696 41 CAGGCCCCTGCAGCAGCTGGGGCAGCGCACGGTGATAAAGT CAGGCCCCTGCAGCAGCTGTGGCAGCGCACGGTGATAAAGT < 41bp 0.456192811270475 0.776895162726159 NA NA prediction 0.553790325452317 Functional Gain - CA4 ENSG00000167434 CDS Human protein_coding chr17:58236676 chr17:58236675 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_17019 0 0 0 0 1 CA4 chr17:58236591 3'AG 58236591 Downstream 85bp 16174 chr19 6921781 6921781 1 + G T UCEC 6921782 + 6921762 6921802 41 GAGCACTGATGTGAAGGGTGGAAGATGGACATCCTTTGGCT GAGCACTGATGTGAAGGGTTGAAGATGGACATCCTTTGGCT < 41bp 0.572210873223023 0.849091740062906 NA NA prediction 0.553761733679767 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6921782 chr19:6921781 stopgain 0.003 0 20 hm7G_associated_SNPs_17021 0 0 0 0 1 ADGRE1 chr19:6921724 3'AG 6921724 Downstream 58bp 16175 chr15 27128544 27128544 1 + G T LUAD 27128545 + 27128525 27128565 41 TGAAAGGCTTCGGTTTAAGGGGCCCATGCAGCGCCTCCCTC TGAAAGGCTTCGGTTTAAGTGGCCCATGCAGCGCCTCCCTC < 41bp 0.43414019353453 0.776860494415957 NA NA prediction 0.553720988831914 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128545 chr15:27128544 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_17023 0 0 0 0 1 GABRA5 chr15:27128484 3'AG 27128484 Downstream 61bp 16176 chr4 90872794 90872794 1 + G T LUSC 90872795 + 90872775 90872815 41 TCGGCATCCGTGCCAAAATGGGGGCACGTGCATAAATGGAA TCGGCATCCGTGCCAAAATTGGGGCACGTGCATAAATGGAA < 41bp 0.452819032183961 0.776857791838114 NA NA prediction 0.553715583676228 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90872795 chr4:90872794 nonsynonymous SNV 0.116 5 20 hm7G_associated_SNPs_17024 0 0 0 0 1 MMRN1 chr4:90872756 3'AG 90872756 Downstream 39bp 16177 chr5 134076784 134076784 1 + G T UCEC 134076785 + 134076765 134076805 41 AAACAAAATCAAAGCAGCAGGACAGTGATAAACTGAACTCC AAACAAAATCAAAGCAGCATGACAGTGATAAACTGAACTCC < 41bp 0.477760577712363 0.776831853272419 NA NA prediction 0.553663706544837 Functional Gain - CAMLG ENSG00000164615 CDS Human protein_coding chr5:134076785 chr5:134076784 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17027 0 0 1 0 1 CAMLG chr5:134076753 3'AG 134076753 Downstream 32bp 16178 chr21 45711046 45711046 1 + G T CESC 45711047 + 45711027 45711067 41 GCTGTGACGGCTGCCCTCGGGCCTTCCACCTGGCCTGCCTG GCTGTGACGGCTGCCCTCGTGCCTTCCACCTGGCCTGCCTG < 41bp 0.439730515519853 0.776828897802491 NA NA prediction 0.553657795604982 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711047 chr21:45711046 synonymous SNV . 0 20 hm7G_associated_SNPs_17028 0 0 0 0 2 AIRE chr21:45710978 3'AG 45710978 Downstream 69bp 16179 chr21 45711046 45711046 1 + G T CESC 45711047 + 45711027 45711067 41 GCTGTGACGGCTGCCCTCGGGCCTTCCACCTGGCCTGCCTG GCTGTGACGGCTGCCCTCGTGCCTTCCACCTGGCCTGCCTG < 41bp 0.439730515519853 0.776828897802491 NA NA prediction 0.553657795604982 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45711047 chr21:45711046 synonymous SNV . 0 20 hm7G_associated_SNPs_17028 0 0 0 0 2 AIRE chr21:45711093 5'GT 45711093 Upstream 48bp 16180 chr5 56180602 56180602 1 + G T COAD 56180603 + 56180583 56180623 41 AAACATCATTAGGATGTTGGGAGCCACGTGTGAGAAGAGCA AAACATCATTAGGATGTTGTGAGCCACGTGTGAGAAGAGCA < 41bp 0.561554857583267 0.83837513216016 NA NA prediction 0.553640549153786 Functional Gain - MAP3K1 ENSG00000095015 CDS Human protein_coding chr5:56180603 chr5:56180602 stopgain 1.000 1 20 hm7G_associated_SNPs_17030 0 0 1 0 1 MAP3K1 chr5:56180653 5'GT 56180653 Upstream 52bp 16181 chr11 67817500 67817500 1 + G T UCEC 67817501 + 67817481 67817521 41 GGAGCTCCGATGAGGAAAAGGCAGGGGGCCTGGATGATGAA GGAGCTCCGATGAGGAAAATGCAGGGGGCCTGGATGATGAA < 41bp 0.577354588960159 0.85416975115867 NA NA prediction 0.553630324397023 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67817501 chr11:67817500 nonsynonymous SNV 0.608 1 20 hm7G_associated_SNPs_17031 0 0 1 0 1 TCIRG1 chr11:67817533 5'GT 67817533 Upstream 34bp 16182 chr15 91486151 91486151 1 + G T LUAD 91486152 + 91486132 91486172 41 TTGTTGCCAGATCCTGCCCGGGAGCTGAAGGTCCTCATCAG TTGTTGCCAGATCCTGCCCTGGAGCTGAAGGTCCTCATCAG < 41bp 0.584395284605224 0.861207849262816 NA NA prediction 0.553625129315183 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91486152 chr15:91486151 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_17032 0 0 1 0 1 UNC45A chr15:91486142 3'AG 91486142 Downstream 10bp 16183 chr21 27056202 27056202 1 + G T UCEC 27056203 + 27056183 27056223 41 TTAATCTTTCAGATCATAAGGCCTATGGGTTTTCTGCCCCA TTAATCTTTCAGATCATAATGCCTATGGGTTTTCTGCCCCA < 41bp 0.461534478740826 0.776807777416215 NA NA prediction 0.55361555483243 Functional Gain - JAM2 ENSG00000154721 CDS Human protein_coding chr21:27056203 chr21:27056202 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_17034 0 0 0 0 2 JAM2 chr21:27056195 3'AG 27056195 Downstream 8bp 16184 chr21 27056202 27056202 1 + G T UCEC 27056203 + 27056183 27056223 41 TTAATCTTTCAGATCATAAGGCCTATGGGTTTTCTGCCCCA TTAATCTTTCAGATCATAATGCCTATGGGTTTTCTGCCCCA < 41bp 0.461534478740826 0.776807777416215 NA NA prediction 0.55361555483243 Functional Gain - JAM2 ENSG00000154721 CDS Human protein_coding chr21:27056203 chr21:27056202 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_17034 0 0 0 0 2 JAM2 chr21:27056260 5'GT 27056260 Upstream 59bp 16185 chr13 27254257 27254257 1 + G T HNSC 27254258 + 27254238 27254278 41 AAAGAAGAGTGGGAGAGAAGGAAAATGGGCATTGAGTTTAT AAAGAAGAGTGGGAGAGAATGAAAATGGGCATTGAGTTTAT < 41bp 0.527458832588982 0.804257335796051 NA NA prediction 0.553597006414136 Functional Gain - WASF3 ENSG00000132970 CDS Human protein_coding chr13:27254258 chr13:27254257 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17036 0 0 0 0 2 WASF3 chr13:27254172 3'AG 27254172 Downstream 86bp 16186 chr13 27254257 27254257 1 + G T HNSC 27254258 + 27254238 27254278 41 AAAGAAGAGTGGGAGAGAAGGAAAATGGGCATTGAGTTTAT AAAGAAGAGTGGGAGAGAATGAAAATGGGCATTGAGTTTAT < 41bp 0.527458832588982 0.804257335796051 NA NA prediction 0.553597006414136 Functional Gain - WASF3 ENSG00000132970 CDS Human protein_coding chr13:27254258 chr13:27254257 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17036 0 0 0 0 2 WASF3 chr13:27254338 5'GT 27254338 Upstream 82bp 16187 chr2 239038812 239038812 1 + G T LUAD 239038813 + 239038793 239038833 41 ACGGAGCAGGCGGCCTGGAGGTACTCACAGACTCATCAGGC ACGGAGCAGGCGGCCTGGATGTACTCACAGACTCATCAGGC < 41bp 0.463995522438733 0.776789668098844 NA NA prediction 0.553579336197688 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038813 chr2:239038812 nonsynonymous SNV 0.596 2 20 hm7G_associated_SNPs_17039 0 0 0 0 1 ESPNL chr2:239038769 3'AG 239038769 Downstream 44bp 16188 chr4 1369228 1369228 1 + G T LUAD 1369229 + 1369209 1369249 41 GGATGGACGAGGAGGTGTCGGACCCCACCTCTGCGGCTGCT GGATGGACGAGGAGGTGTCTGACCCCACCTCTGCGGCTGCT < 41bp 0.441597538669639 0.776782781023388 NA NA prediction 0.553565562046777 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1369229 chr4:1369228 synonymous SNV . 0 20 hm7G_associated_SNPs_17040 0 0 1 0 2 UVSSA chr4:1369152 3'AG 1369152 Downstream 77bp 16189 chr4 1369228 1369228 1 + G T LUAD 1369229 + 1369209 1369249 41 GGATGGACGAGGAGGTGTCGGACCCCACCTCTGCGGCTGCT GGATGGACGAGGAGGTGTCTGACCCCACCTCTGCGGCTGCT < 41bp 0.441597538669639 0.776782781023388 NA NA prediction 0.553565562046777 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1369229 chr4:1369228 synonymous SNV . 0 20 hm7G_associated_SNPs_17040 0 0 1 0 2 UVSSA chr4:1369296 5'GT 1369296 Upstream 69bp 16190 chr9 136406064 136406064 1 + G T LUAD 136406065 + 136406045 136406085 41 AAGTGTGGCATCTGCCAGGGGGACGGTAGCAGCTGCACCCA AAGTGTGGCATCTGCCAGGTGGACGGTAGCAGCTGCACCCA < 41bp 0.589592185302883 0.866370526061263 NA NA prediction 0.55355668151676 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136406065 chr9:136406064 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_17041 0 0 0 0 2 ADAMTSL2 chr9:136406000 3'AG 136406000 Downstream 65bp 16191 chr9 136406064 136406064 1 + G T LUAD 136406065 + 136406045 136406085 41 AAGTGTGGCATCTGCCAGGGGGACGGTAGCAGCTGCACCCA AAGTGTGGCATCTGCCAGGTGGACGGTAGCAGCTGCACCCA < 41bp 0.589592185302883 0.866370526061263 NA NA prediction 0.55355668151676 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136406065 chr9:136406064 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_17041 0 0 0 0 2 ADAMTSL2 chr9:136406123 5'GT 136406123 Upstream 60bp 16192 chr10 120892061 120892061 1 + G T UCEC 120892062 + 120892042 120892082 41 GCAAACTGCACAAAGAAATGGGTCAGCTAATTGTTCAGTCT GCAAACTGCACAAAGAAATTGGTCAGCTAATTGTTCAGTCT < 41bp 0.571435359556663 0.848210934165806 NA NA prediction 0.553551149218286 Functional Gain - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120892062 chr10:120892061 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_17042 0 0 0 0 2 FAM45A chr10:120892027 3'AG 120892027 Downstream 35bp 16193 chr10 120892061 120892061 1 + G T UCEC 120892062 + 120892042 120892082 41 GCAAACTGCACAAAGAAATGGGTCAGCTAATTGTTCAGTCT GCAAACTGCACAAAGAAATTGGTCAGCTAATTGTTCAGTCT < 41bp 0.571435359556663 0.848210934165806 NA NA prediction 0.553551149218286 Functional Gain - FAM45A ENSG00000119979 CDS Human protein_coding chr10:120892062 chr10:120892061 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_17042 0 0 0 0 2 FAM45A chr10:120892121 5'GT 120892121 Upstream 61bp 16194 chr22 33253245 33253245 1 + G T UCEC 33253246 + 33253226 33253266 41 TTGCCCACAGATGTACCGAGGCTTCACCAAGATGCCCCATG TTGCCCACAGATGTACCGATGCTTCACCAAGATGCCCCATG < 41bp 0.578689942626516 0.855450308115849 NA NA prediction 0.553520730978665 Functional Gain - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33253246 chr22:33253245 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17043 0 0 1 0 1 TIMP3 chr22:33253236 3'AG 33253236 Downstream 10bp 16195 chr19 58697164 58697164 1 + G T LGG 58697165 + 58697145 58697185 41 AAACAGAAGTCCCTGTACAGGGAAGTGATGCTGGAGAACTA AAACAGAAGTCCCTGTACATGGAAGTGATGCTGGAGAACTA < 41bp 0.517885101812641 0.794645010172176 NA NA prediction 0.553519816719069 Functional Gain - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697165 chr19:58697164 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17044 0 0 1 2 2 ZNF274 chr19:58697079 3'AG 58697079 Downstream 86bp 16196 chr19 58697164 58697164 1 + G T LGG 58697165 + 58697145 58697185 41 AAACAGAAGTCCCTGTACAGGGAAGTGATGCTGGAGAACTA AAACAGAAGTCCCTGTACATGGAAGTGATGCTGGAGAACTA < 41bp 0.517885101812641 0.794645010172176 NA NA prediction 0.553519816719069 Functional Gain - ZNF274 ENSG00000171606 CDS Human protein_coding chr19:58697165 chr19:58697164 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17044 0 0 1 2 2 ZNF274 chr19:58697205 5'GT 58697205 Upstream 42bp 16197 chr19 58797547 58797547 1 + G T UCEC 58797548 + 58797528 58797568 41 GCTATGGGTGGCTGAGAGAGGAACCACCCAGGGCTGCCATC GCTATGGGTGGCTGAGAGATGAACCACCCAGGGCTGCCATC < 41bp 0.577166109901266 0.85391633387546 NA NA prediction 0.553500447948388 Functional Gain - ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58797548 chr19:58797547 stopgain 0.092 0 20 hm7G_associated_SNPs_17046 0 0 1 0 2 ZNF8 chr19:58797476 3'AG 58797476 Downstream 72bp 16198 chr19 58797547 58797547 1 + G T UCEC 58797548 + 58797528 58797568 41 GCTATGGGTGGCTGAGAGAGGAACCACCCAGGGCTGCCATC GCTATGGGTGGCTGAGAGATGAACCACCCAGGGCTGCCATC < 41bp 0.577166109901266 0.85391633387546 NA NA prediction 0.553500447948388 Functional Gain - ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58797548 chr19:58797547 stopgain 0.092 0 20 hm7G_associated_SNPs_17046 0 0 1 0 2 ZNF8 chr19:58797571 5'GT 58797571 Upstream 25bp 16199 chr3 24006638 24006638 1 + G T LGG 24006639 + 24006619 24006659 41 ACCAGGTCAACCTTTTAAAGGCTGGGACTTTTGAGGTAGGT ACCAGGTCAACCTTTTAAATGCTGGGACTTTTGAGGTAGGT < 41bp 0.559574493028147 0.836314498193661 NA NA prediction 0.553480010331027 Functional Gain - NR1D2 ENSG00000174738 CDS Human protein_coding chr3:24006639 chr3:24006638 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_17047 0 0 1 0 1 NR1D2 chr3:24006653 5'GT 24006653 Upstream 16bp 16200 chr10 26446322 26446322 1 + G T LUSC 26446323 + 26446303 26446343 41 AACCAAATAGTGAGCGTCAGGCAAGAAAATATGACAAAGAG AACCAAATAGTGAGCGTCATGCAAGAAAATATGACAAAGAG < 41bp 0.462933856172812 0.776739317347285 NA NA prediction 0.553478634694571 Functional Gain - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26446323 chr10:26446322 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17048 0 0 0 0 1 MYO3A chr10:26446239 3'AG 26446239 Downstream 84bp 16201 chr16 89755683 89755683 1 + G T UCEC 89755684 + 89755664 89755704 41 GACGATGCCGGAGTGTGAAGGAGTTTGAGAAGCTGAACCGC GACGATGCCGGAGTGTGAATGAGTTTGAGAAGCTGAACCGC < 41bp 0.571238286603664 0.847968117493541 NA NA prediction 0.553459661779756 Functional Gain - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89755684 chr16:89755683 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_17049 0 0 1 0 2 CDK10 chr16:89755660 3'AG 89755660 Downstream 24bp 16202 chr16 89755683 89755683 1 + G T UCEC 89755684 + 89755664 89755704 41 GACGATGCCGGAGTGTGAAGGAGTTTGAGAAGCTGAACCGC GACGATGCCGGAGTGTGAATGAGTTTGAGAAGCTGAACCGC < 41bp 0.571238286603664 0.847968117493541 NA NA prediction 0.553459661779756 Functional Gain - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89755684 chr16:89755683 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_17049 0 0 1 0 2 CDK10 chr16:89755732 5'GT 89755732 Upstream 50bp 16203 chr7 89790588 89790588 1 + G T GBM 89790589 + 89790569 89790609 41 AGTCTGTCTTACCCAATGAGGCGATCCTACAGATACAAGTT AGTCTGTCTTACCCAATGATGCGATCCTACAGATACAAGTT < 41bp 0.463425245972274 0.776723863297558 NA NA prediction 0.553447726595115 Functional Gain - STEAP1 ENSG00000164647 CDS Human protein_coding chr7:89790589 chr7:89790588 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_17050 0 0 0 0 1 STEAP1 chr7:89790631 5'GT 89790631 Upstream 44bp 16204 chr8 133806801 133806801 1 + G T UCEC 133806802 + 133806782 133806822 41 ACCAGCACTAAGAAAAGAAGGGCTAAAAGATGAGGAAGATT ACCAGCACTAAGAAAAGAATGGCTAAAAGATGAGGAAGATT < 41bp 0.562496530045587 0.839204979070022 NA NA prediction 0.553416898048871 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133806802 chr8:133806801 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_17053 0 0 1 0 1 PHF20L1 chr8:133806827 5'GT 133806827 Upstream 27bp 16205 chr1 79002132 79002132 1 + G T LUAD 79002133 + 79002113 79002153 41 TAAATGGAAATCATTCTCTGGAAACCTGTGAAACAACACTT TAAATGGAAATCATTCTCTTGAAACCTGTGAAACAACACTT < 41bp 0.52891060233649 0.805610837161107 NA NA prediction 0.553400469649235 Functional Gain - PTGFR ENSG00000122420 CDS Human protein_coding chr1:79002133 chr1:79002132 synonymous SNV . 0 20 hm7G_associated_SNPs_17054 0 0 0 0 1 PTGFR chr1:79002091 3'AG 79002091 Downstream 42bp 16206 chr8 43037331 43037331 1 + G T LUAD 43037332 + 43037312 43037352 41 CTGGTGTGCTGCAGCGATTGGGAGTGACATACTTTGTGGTT CTGGTGTGCTGCAGCGATTTGGAGTGACATACTTTGTGGTT < 41bp 0.563825571360227 0.840513165446053 NA NA prediction 0.553375188171653 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43037332 chr8:43037331 nonsynonymous SNV 0.469 2 20 hm7G_associated_SNPs_17055 0 0 1 0 1 HGSNAT chr8:43037403 5'GT 43037403 Upstream 73bp 16207 chr5 31538727 31538727 1 + G T COAD 31538728 + 31538708 31538748 41 AAATTTTGAAGAAAGGGAAGGCATTTGTTTTAGATATTGAC AAATTTTGAAGAAAGGGAATGCATTTGTTTTAGATATTGAC < 41bp 0.550983254937665 0.827669304981584 NA NA prediction 0.553372100087837 Functional Gain - C5orf22 ENSG00000082213 CDS Human protein_coding chr5:31538728 chr5:31538727 nonsynonymous SNV 0.600 0 20 hm7G_associated_SNPs_17056 0 0 1 1 1 C5orf22 chr5:31538796 5'GT 31538796 Upstream 70bp 16208 chr13 25440326 25440326 1 + G T UCEC 25440327 + 25440307 25440347 41 AGTATGAAGAGGAACAATGGGAAATAAGGTTTGAGGTAAGT AGTATGAAGAGGAACAATGTGAAATAAGGTTTGAGGTAAGT < 41bp 0.521714122013751 0.798398357146414 NA NA prediction 0.553368470265327 Functional Gain - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25440327 chr13:25440326 nonsynonymous SNV 0.868 4 20 hm7G_associated_SNPs_17057 0 0 0 1 2 RNF17 chr13:25440282 3'AG 25440282 Downstream 45bp 16209 chr13 25440326 25440326 1 + G T UCEC 25440327 + 25440307 25440347 41 AGTATGAAGAGGAACAATGGGAAATAAGGTTTGAGGTAAGT AGTATGAAGAGGAACAATGTGAAATAAGGTTTGAGGTAAGT < 41bp 0.521714122013751 0.798398357146414 NA NA prediction 0.553368470265327 Functional Gain - RNF17 ENSG00000132972 CDS Human protein_coding chr13:25440327 chr13:25440326 nonsynonymous SNV 0.868 4 20 hm7G_associated_SNPs_17057 0 0 0 1 2 RNF17 chr13:25440341 5'GT 25440341 Upstream 16bp 16210 chrX 16836796 16836796 1 + G T UCEC 16836797 + 16836777 16836817 41 TGATATTCTTCAACATCAAGGCTCAAATTGTGGTGGCACAA TGATATTCTTCAACATCAATGCTCAAATTGTGGTGGCACAA < 41bp 0.567211645748302 0.84387103669493 NA NA prediction 0.553318781893256 Functional Gain - TXLNG ENSG00000086712 CDS Human protein_coding chrX:16836797 chrX:16836796 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17059 0 0 1 0 1 TXLNG chrX:16836697 3'AG 16836697 Downstream 100bp 16211 chr5 40959655 40959655 1 + G T LUSC 40959656 + 40959636 40959676 41 CCCACCTCCCAGTGGGGGTGGGAGATCCTGCGTTGGAGAAA CCCACCTCCCAGTGGGGGTTGGAGATCCTGCGTTGGAGAAA < 41bp 0.578483152907442 0.855131950865676 NA NA prediction 0.553297595916468 Functional Gain - C7 ENSG00000112936 CDS Human protein_coding chr5:40959656 chr5:40959655 nonsynonymous SNV 0.033 4 20 hm7G_associated_SNPs_17060 0 0 0 0 1 C7 chr5:40959722 5'GT 40959722 Upstream 68bp 16212 chr2 113082544 113082544 1 + G T COAD 113082545 + 113082525 113082565 41 CATGTTATACATGTAGATGGGATGTGGCATGGTGAATTTGC CATGTTATACATGTAGATGTGATGTGGCATGGTGAATTTGC < 41bp 0.478761205758379 0.776645880409846 NA NA prediction 0.553291760819693 Functional Gain - ZC3H6 ENSG00000188177 CDS Human protein_coding chr2:113082545 chr2:113082544 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17061 0 0 0 0 1 ZC3H6 chr2:113082541 3'AG 113082541 Downstream 4bp 16213 chr4 100540169 100540169 1 + G T UCEC 100540170 + 100540150 100540190 41 GACTAAAAGCCAATATAGAGGTCCAGGGTGGTCTAGCTATT GACTAAAAGCCAATATAGATGTCCAGGGTGGTCTAGCTATT < 41bp 0.540930725172043 0.817566017253338 NA NA prediction 0.553270584162589 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100540170 chr4:100540169 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_17062 0 0 1 0 2 MTTP chr4:100540131 3'AG 100540131 Downstream 39bp 16214 chr4 100540169 100540169 1 + G T UCEC 100540170 + 100540150 100540190 41 GACTAAAAGCCAATATAGAGGTCCAGGGTGGTCTAGCTATT GACTAAAAGCCAATATAGATGTCCAGGGTGGTCTAGCTATT < 41bp 0.540930725172043 0.817566017253338 NA NA prediction 0.553270584162589 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100540170 chr4:100540169 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_17062 0 0 1 0 2 MTTP chr4:100540255 5'GT 100540255 Upstream 87bp 16215 chr10 103354425 103354425 1 + G T UCEC 103354426 + 103354406 103354446 41 TGTGCATAGGGAGAAGGAAGGTTCACTATTTATTCCCAGAC TGTGCATAGGGAGAAGGAATGTTCACTATTTATTCCCAGAC < 41bp 0.559178301765203 0.835799838929906 NA NA prediction 0.553243074329406 Functional Gain - DPCD ENSG00000166171 CDS Human protein_coding chr10:103354426 chr10:103354425 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_17063 0 0 0 0 2 DPCD chr10:103354415 3'AG 103354415 Downstream 11bp 16216 chr10 103354425 103354425 1 + G T UCEC 103354426 + 103354406 103354446 41 TGTGCATAGGGAGAAGGAAGGTTCACTATTTATTCCCAGAC TGTGCATAGGGAGAAGGAATGTTCACTATTTATTCCCAGAC < 41bp 0.559178301765203 0.835799838929906 NA NA prediction 0.553243074329406 Functional Gain - DPCD ENSG00000166171 CDS Human protein_coding chr10:103354426 chr10:103354425 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_17063 0 0 0 0 2 DPCD chr10:103354495 5'GT 103354495 Upstream 71bp 16217 chr12 27461380 27461380 1 + G T UCEC 27461381 + 27461361 27461401 41 TCTGAAAGTTATAGGAAGAGGAGCTTTTGGAGAGGTGTGCT TCTGAAAGTTATAGGAAGATGAGCTTTTGGAGAGGTGTGCT < 41bp 0.554017489119067 0.830629635185818 NA NA prediction 0.553224292133502 Functional Gain - STK38L ENSG00000211455 CDS Human protein_coding chr12:27461381 chr12:27461380 stopgain 1.000 1 20 hm7G_associated_SNPs_17064 0 0 1 0 1 STK38L chr12:27461394 5'GT 27461394 Upstream 15bp 16218 chr14 21546374 21546374 1 + G T LUAD 21546375 + 21546355 21546395 41 GCCTGTGCCAAGGTGTGCTGGGCTCGGTACGGCAGGCCATT GCCTGTGCCAAGGTGTGCTTGGCTCGGTACGGCAGGCCATT < 41bp 0.434523952192939 0.776606305558932 NA NA prediction 0.553212611117863 Functional Gain - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21546375 chr14:21546374 synonymous SNV . 0 20 hm7G_associated_SNPs_17065 0 0 1 0 2 ARHGEF40 chr14:21546336 3'AG 21546336 Downstream 39bp 16219 chr14 21546374 21546374 1 + G T LUAD 21546375 + 21546355 21546395 41 GCCTGTGCCAAGGTGTGCTGGGCTCGGTACGGCAGGCCATT GCCTGTGCCAAGGTGTGCTTGGCTCGGTACGGCAGGCCATT < 41bp 0.434523952192939 0.776606305558932 NA NA prediction 0.553212611117863 Functional Gain - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21546375 chr14:21546374 synonymous SNV . 0 20 hm7G_associated_SNPs_17065 0 0 1 0 2 ARHGEF40 chr14:21546431 5'GT 21546431 Upstream 58bp 16220 chr19 763554 763554 1 + G T LIHC 763555 + 763535 763575 41 ACGCCATGGCAGAGCGCTGGGAATCCCGCATCTACGCCAGT ACGCCATGGCAGAGCGCTGTGAATCCCGCATCTACGCCAGT < 41bp 0.462951601474729 0.776597306215402 NA NA prediction 0.553194612430804 Functional Gain - MISP ENSG00000099812 CDS Human protein_coding chr19:763555 chr19:763554 nonsynonymous SNV 0.680 5 20 hm7G_associated_SNPs_17067 0 0 0 0 1 MISP chr19:763501 3'AG 763501 Downstream 54bp 16221 chr16 88052217 88052217 1 + G T ESCA 88052218 + 88052198 88052238 41 GCTGTGTCCAACCTCTCGGGGCAGGGCAAGCACGGGAAGAA GCTGTGTCCAACCTCTCGGTGCAGGGCAAGCACGGGAAGAA < 41bp 0.585892533554515 0.862477293076422 NA NA prediction 0.553169519043815 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88052218 chr16:88052217 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_17070 0 0 0 0 1 BANP chr16:88052273 5'GT 88052273 Upstream 57bp 16222 chr3 44762440 44762440 1 + G T LUAD 44762441 + 44762421 44762461 41 TCAGGGATAGTAGTAAAGAGGTTCCAAGAGGATGAATACCA TCAGGGATAGTAGTAAAGATGTTCCAAGAGGATGAATACCA < 41bp 0.493208405267828 0.776556331416133 NA NA prediction 0.553112662832265 Functional Gain - ZNF502 ENSG00000196653 CDS Human protein_coding chr3:44762441 chr3:44762440 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_17072 0 0 0 0 1 ZNF502 chr3:44762365 3'AG 44762365 Downstream 76bp 16223 chr1 10596278 10596278 1 + G T BRCA 10596279 + 10596259 10596299 41 TCTCTCACCAGATTGCCACGGCAGTGAAGTTTCTACAGAAT TCTCTCACCAGATTGCCACTGCAGTGAAGTTTCTACAGAAT < 41bp 0.489881400819713 0.776551774351423 NA NA prediction 0.553103548702847 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10596279 chr1:10596278 synonymous SNV . 0 20 hm7G_associated_SNPs_17073 0 0 1 0 2 PEX14 chr1:10596270 3'AG 10596270 Downstream 9bp 16224 chr1 10596278 10596278 1 + G T BRCA 10596279 + 10596259 10596299 41 TCTCTCACCAGATTGCCACGGCAGTGAAGTTTCTACAGAAT TCTCTCACCAGATTGCCACTGCAGTGAAGTTTCTACAGAAT < 41bp 0.489881400819713 0.776551774351423 NA NA prediction 0.553103548702847 Functional Gain - PEX14 ENSG00000142655 CDS Human protein_coding chr1:10596279 chr1:10596278 synonymous SNV . 0 20 hm7G_associated_SNPs_17073 0 0 1 0 2 PEX14 chr1:10596354 5'GT 10596354 Upstream 77bp 16225 chr20 3728920 3728920 1 + G T UCEC 3728921 + 3728901 3728941 41 TCATCGCCCTGGAGCCCGAGGCCGCCTCGGTATACTGCCGC TCATCGCCCTGGAGCCCGATGCCGCCTCGGTATACTGCCGC < 41bp 0.423119351302768 0.776550457912583 NA NA prediction 0.553100915825165 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3728921 chr20:3728920 nonsynonymous SNV 0.333 2 20 hm7G_associated_SNPs_17074 0 0 0 0 1 HSPA12B chr20:3728864 3'AG 3728864 Downstream 57bp 16226 chr12 7172531 7172531 1 + G T LIHC 7172532 + 7172512 7172552 41 AGAAAGGGTTCCAAGTGGTGGTGACCTTGCGGAGAGAAGAT AGAAAGGGTTCCAAGTGGTTGTGACCTTGCGGAGAGAAGAT < 41bp 0.448706468871431 0.776542591714275 NA NA prediction 0.55308518342855 Functional Gain - C1S ENSG00000182326 CDS Human protein_coding chr12:7172532 chr12:7172531 synonymous SNV . 0 20 hm7G_associated_SNPs_17076 0 0 1 0 1 C1S chr12:7172603 5'GT 7172603 Upstream 73bp 16227 chr3 179439258 179439258 1 + G T LUAD 179439259 + 179439239 179439279 41 GGGAAGTGATCCAGGAGTCGGGCACGAAACTGAAGCCAATG GGGAAGTGATCCAGGAGTCTGGCACGAAACTGAAGCCAATG < 41bp 0.575689199564837 0.852214976489292 NA NA prediction 0.553051553848909 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179439259 chr3:179439258 synonymous SNV . 0 20 hm7G_associated_SNPs_17078 0 0 1 0 1 USP13 chr3:179439190 3'AG 179439190 Downstream 69bp 16228 chr12 8245515 8245515 1 + G T LUAD 8245516 + 8245496 8245536 41 CTAAGCCCAGGACTGCAAGGGGTGGGGGTCTGAGCTTACTC CTAAGCCCAGGACTGCAAGTGGTGGGGGTCTGAGCTTACTC < 41bp 0.573597204854255 0.850121153554695 NA NA prediction 0.553047897400881 Functional Gain - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8245516 chr12:8245515 nonsynonymous SNV 0.075 1 20 hm7G_associated_SNPs_17079 0 0 1 0 1 NECAP1 chr12:8245468 3'AG 8245468 Downstream 48bp 16229 chr17 73089869 73089869 1 + G T COAD 73089870 + 73089850 73089890 41 AATTGCAATGGGAGTTCCAGGCCAGCAACAGCGAGACCTCT AATTGCAATGGGAGTTCCATGCCAGCAACAGCGAGACCTCT < 41bp 0.585714070394494 0.86223627199062 NA NA prediction 0.553044403192251 Functional Gain - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73089870 chr17:73089869 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_17080 0 0 0 0 1 SLC16A5 chr17:73089930 5'GT 73089930 Upstream 62bp 16230 chr3 126385988 126385988 1 + G T UCEC 126385989 + 126385969 126386009 41 TCTCCCACTGCTTGAAGGAGGCAGCACAGCTTCTGGGGGCA TCTCCCACTGCTTGAAGGATGCAGCACAGCTTCTGGGGGCA < 41bp 0.523703525166467 0.800203427258889 NA NA prediction 0.552999804184844 Functional Gain - NUP210P1 ENSG00000198284 ncRNA_exonic Human transcribed_processed_pseudogene chr3:126385989 chr3:126385988 . . 0 20 hm7G_associated_SNPs_17084 0 0 0 0 1 NUP210P1 chr3:126385949 3'AG 126385949 Downstream 40bp 16231 chr15 50526173 50526173 1 + G T UCEC 50526174 + 50526154 50526194 41 TACCTACCTAGTTATGCAAGGCCCCGGTTTCTAAGAATACA TACCTACCTAGTTATGCAATGCCCCGGTTTCTAAGAATACA < 41bp 0.568621363697664 0.845118573234614 NA NA prediction 0.5529944190739 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50526174 chr15:50526173 nonsynonymous SNV 0.837 3 20 hm7G_associated_SNPs_17085 0 0 1 0 1 SLC27A2 chr15:50526195 5'GT 50526195 Upstream 23bp 16232 chr2 70502693 70502693 1 + G T KIRC 70502694 + 70502674 70502714 41 TGGCCTTTGGGCAGTAGAAGGTGGCAATAAACTTGTTTGCT TGGCCTTTGGGCAGTAGAATGTGGCAATAAACTTGTTTGCT < 41bp 0.468224847552693 0.776497172112482 NA NA prediction 0.552994344224964 Functional Gain - PCYOX1 ENSG00000116005 CDS Human protein_coding chr2:70502694 chr2:70502693 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17086 0 0 1 0 1 PCYOX1 chr2:70502646 3'AG 70502646 Downstream 48bp 16233 chr2 228754681 228754681 1 + G T LUAD 228754682 + 228754662 228754702 41 GAGGTTGCAAGAGAAACTCGGCCAGAACAGCAATCACACGT GAGGTTGCAAGAGAAACTCTGCCAGAACAGCAATCACACGT < 41bp 0.467378114057529 0.776489799712091 NA NA prediction 0.552979599424181 Functional Gain - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228754682 chr2:228754681 nonsynonymous SNV 0.621 0 20 hm7G_associated_SNPs_17088 0 0 0 0 1 DAW1 chr2:228754716 5'GT 228754716 Upstream 36bp 16234 chr7 129769318 129769318 1 + G T UCEC 129769319 + 129769299 129769339 41 TAATGGAGAGGTGATCCTGGGAGATATCTGGAAGTTGAATC TAATGGAGAGGTGATCCTGTGAGATATCTGGAAGTTGAATC < 41bp 0.454238184587238 0.776486866582364 NA NA prediction 0.552973733164729 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129769319 chr7:129769318 stopgain 1.000 1 20 hm7G_associated_SNPs_17089 0 0 1 0 2 KLHDC10 chr7:129769277 3'AG 129769277 Downstream 42bp 16235 chr7 129769318 129769318 1 + G T UCEC 129769319 + 129769299 129769339 41 TAATGGAGAGGTGATCCTGGGAGATATCTGGAAGTTGAATC TAATGGAGAGGTGATCCTGTGAGATATCTGGAAGTTGAATC < 41bp 0.454238184587238 0.776486866582364 NA NA prediction 0.552973733164729 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129769319 chr7:129769318 stopgain 1.000 1 20 hm7G_associated_SNPs_17089 0 0 1 0 2 KLHDC10 chr7:129769416 5'GT 129769416 Upstream 99bp 16236 chr11 6412727 6412727 1 + G T LUSC 6412728 + 6412708 6412748 41 ACCTCTTTGAGGATGACATGGTGGAGGTGTGGAGACGCTCA ACCTCTTTGAGGATGACATTGTGGAGGTGTGGAGACGCTCA < 41bp 0.568371988764286 0.844829465178662 NA NA prediction 0.552914952828754 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6412728 chr11:6412727 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_17093 0 0 0 0 1 SMPD1 chr11:6412733 5'GT 6412733 Upstream 7bp 16237 chr21 41137526 41137526 1 + G T UCEC 41137527 + 41137507 41137547 41 GAGTCCTGAAGGGCTCCCAGGCTCGCTTCAACTGCACCGTC GAGTCCTGAAGGGCTCCCATGCTCGCTTCAACTGCACCGTC < 41bp 0.585588592279995 0.862040011176144 NA NA prediction 0.552902837792298 Functional Gain - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41137527 chr21:41137526 nonsynonymous SNV 0.925 3 20 hm7G_associated_SNPs_17095 0 0 0 0 1 IGSF5 chr21:41137462 3'AG 41137462 Downstream 65bp 16238 chr19 57931022 57931022 1 + G T UCEC 57931023 + 57931003 57931043 41 GTTGTTGGCATGGAGCCAAGGATGAGGAGGCACCTTCCAAG GTTGTTGGCATGGAGCCAATGATGAGGAGGCACCTTCCAAG < 41bp 0.538872682294104 0.815319192299215 NA NA prediction 0.552893020010222 Functional Gain - ZNF17 ENSG00000186272;ENSG00000269533 CDS Human other chr19:57931023 chr19:57931022 nonsynonymous SNV 0.230 0 20 hm7G_associated_SNPs_17096 0 0 1 0 1 ZNF17 chr19:57931003 3'AG 57931003 Downstream 20bp 16239 chr20 60854223 60854223 1 + G T UCEC 60854224 + 60854204 60854244 41 TTGACCTAGGGAAGATTTAGGATTCAGATTTATATCGGAAC TTGACCTAGGGAAGATTTATGATTCAGATTTATATCGGAAC < 41bp 0.457087279229515 0.776446492127803 NA NA prediction 0.552892984255607 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60854224 chr20:60854223 stopgain 0.844 1 20 hm7G_associated_SNPs_17097 0 0 1 0 1 OSBPL2 chr20:60854213 3'AG 60854213 Downstream 11bp 16240 chr6 80745010 80745010 1 + G T COAD 80745011 + 80744991 80745031 41 CGGACCAGTACATCTACATGGTAATGGAGTGTGGAAATATT CGGACCAGTACATCTACATTGTAATGGAGTGTGGAAATATT < 41bp 0.479109482681141 0.776443819589472 NA NA prediction 0.552887639178945 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80745011 chr6:80745010 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17098 0 0 1 0 1 TTK chr6:80744983 3'AG 80744983 Downstream 28bp 16241 chr7 129950805 129950805 1 + G T OV 129950806 + 129950786 129950826 41 ATGGGTACTCAGTCAAAAAGGCCCCAGATGCCGAGGAACTC ATGGGTACTCAGTCAAAAATGCCCCAGATGCCGAGGAACTC < 41bp 0.579316993489136 0.855749646115828 NA NA prediction 0.552865305253384 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950806 chr7:129950805 nonsynonymous SNV 0.073 0 20 hm7G_associated_SNPs_17100 0 0 0 0 1 CPA4 chr7:129950826 5'GT 129950826 Upstream 22bp 16242 chr4 947094 947094 1 + G T THYM 947095 + 947075 947115 41 GCATCGTCCTCCAAGGCCCGGCCCTGTGCTTTGCAGCGGCC GCATCGTCCTCCAAGGCCCTGCCCTGTGCTTTGCAGCGGCC < 41bp 0.436297743765608 0.776405412947088 NA NA prediction 0.552810825894176 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:947095 chr4:947094 synonymous SNV . 0 20 hm7G_associated_SNPs_17104 0 0 0 0 1 TMEM175 chr4:947142 5'GT 947142 Upstream 49bp 16243 chr8 144295791 144295791 1 + G T UCEC 144295792 + 144295772 144295812 41 AGGATGAGGTGGAAGAGGAGGAGACCAACAGGCTCCCTGGT AGGATGAGGTGGAAGAGGATGAGACCAACAGGCTCCCTGGT < 41bp 0.572371685438205 0.848772310275035 NA NA prediction 0.552801249673659 Functional Gain - GPIHBP1 ENSG00000182851 CDS Human other chr8:144295792 chr8:144295791 nonsynonymous SNV 0.351 0 20 hm7G_associated_SNPs_17105 0 0 0 0 2 GPIHBP1 chr8:144295697 3'AG 144295697 Downstream 95bp 16244 chr8 144295791 144295791 1 + G T UCEC 144295792 + 144295772 144295812 41 AGGATGAGGTGGAAGAGGAGGAGACCAACAGGCTCCCTGGT AGGATGAGGTGGAAGAGGATGAGACCAACAGGCTCCCTGGT < 41bp 0.572371685438205 0.848772310275035 NA NA prediction 0.552801249673659 Functional Gain - GPIHBP1 ENSG00000182851 CDS Human other chr8:144295792 chr8:144295791 nonsynonymous SNV 0.351 0 20 hm7G_associated_SNPs_17105 0 0 0 0 2 GPIHBP1 chr8:144295825 5'GT 144295825 Upstream 35bp 16245 chr22 21414754 21414754 1 + G T ESCA 21414755 + 21414735 21414775 41 AGACTGGCGCTTGCAGAGTGGAGTATAAAAAGGAGTTGCTG AGACTGGCGCTTGCAGAGTTGAGTATAAAAAGGAGTTGCTG < 41bp 0.4569129985492 0.776399783249729 NA NA prediction 0.552799566499458 Functional Gain - LRRC74B ENSG00000187905 CDS Human protein_coding chr22:21414755 chr22:21414754 synonymous SNV . 0 20 hm7G_associated_SNPs_17106 0 0 0 0 1 LRRC74B chr22:21414662 3'AG 21414662 Downstream 93bp 16246 chr7 152513608 152513608 1 + G T COAD 152513609 + 152513589 152513629 41 TTGGACATCTCGACAAGTGGGTGAACGTACGTTAACGGGGA TTGGACATCTCGACAAGTGTGTGAACGTACGTTAACGGGGA < 41bp 0.571784861832416 0.848178168324119 NA NA prediction 0.552786612983407 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152513609 chr7:152513608 nonsynonymous SNV 0.960 3 20 hm7G_associated_SNPs_17107 0 0 1 0 2 ACTR3B chr7:152513566 3'AG 152513566 Downstream 43bp 16247 chr7 152513608 152513608 1 + G T COAD 152513609 + 152513589 152513629 41 TTGGACATCTCGACAAGTGGGTGAACGTACGTTAACGGGGA TTGGACATCTCGACAAGTGTGTGAACGTACGTTAACGGGGA < 41bp 0.571784861832416 0.848178168324119 NA NA prediction 0.552786612983407 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152513609 chr7:152513608 nonsynonymous SNV 0.960 3 20 hm7G_associated_SNPs_17107 0 0 1 0 2 ACTR3B chr7:152513673 5'GT 152513673 Upstream 66bp 16248 chr11 6291979 6291979 1 + G T READ 6291980 + 6291960 6292000 41 CTTAGGGCTTCGCTTTGACGGCGACAGTGACAGCGACAGCC CTTAGGGCTTCGCTTTGACTGCGACAGTGACAGCGACAGCC < 41bp 0.580560356877017 0.856942806745975 NA NA prediction 0.552764899737915 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291980 chr11:6291979 nonsynonymous SNV 0.315 0 20 hm7G_associated_SNPs_17110 0 0 0 0 2 CCKBR chr11:6292033 5'GT 6292033 Upstream 55bp 16249 chr11 6291979 6291979 1 + G T READ 6291980 + 6291960 6292000 41 CTTAGGGCTTCGCTTTGACGGCGACAGTGACAGCGACAGCC CTTAGGGCTTCGCTTTGACTGCGACAGTGACAGCGACAGCC < 41bp 0.580560356877017 0.856942806745975 NA NA prediction 0.552764899737915 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291980 chr11:6291979 nonsynonymous SNV 0.315 0 20 hm7G_associated_SNPs_17110 0 0 0 0 2 CCKBR chr11:6292048 5'GT 6292048 Upstream 70bp 16250 chr16 90001161 90001161 1 + G T COAD 90001162 + 90001142 90001182 41 AGTGGGGCCGGCAACAACTGGGCCAAGGGTCACTACACGGA AGTGGGGCCGGCAACAACTTGGCCAAGGGTCACTACACGGA < 41bp 0.578368598596366 0.85474979153883 NA NA prediction 0.552762385884927 Functional Gain - TUBB3 ENSG00000198211;ENSG00000258947 CDS Human other chr16:90001162 chr16:90001161 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17111 0 0 1 0 1 TUBB3 chr16:90001137 3'AG 90001137 Downstream 25bp 16251 chr19 40009595 40009595 1 + G T LUAD 40009596 + 40009576 40009616 41 TTTGAGGTGTTTGTGAACGGGAGACTGGTCCATTCCAAGAA TTTGAGGTGTTTGTGAACGTGAGACTGGTCCATTCCAAGAA < 41bp 0.459075683321364 0.776368710993897 NA NA prediction 0.552737421987795 Functional Gain - SELENOV ENSG00000186838 CDS Human protein_coding chr19:40009596 chr19:40009595 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_17112 0 0 0 0 2 SELENOV chr19:40009543 3'AG 40009543 Downstream 53bp 16252 chr19 40009595 40009595 1 + G T LUAD 40009596 + 40009576 40009616 41 TTTGAGGTGTTTGTGAACGGGAGACTGGTCCATTCCAAGAA TTTGAGGTGTTTGTGAACGTGAGACTGGTCCATTCCAAGAA < 41bp 0.459075683321364 0.776368710993897 NA NA prediction 0.552737421987795 Functional Gain - SELENOV ENSG00000186838 CDS Human protein_coding chr19:40009596 chr19:40009595 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_17112 0 0 0 0 2 SELENOV chr19:40009617 5'GT 40009617 Upstream 23bp 16253 chr2 27852010 27852010 1 + G T LUSC 27852011 + 27851991 27852031 41 GTTGGTGTTGGGAATGGCGGGATCCGGGAAAACCACTTTTG GTTGGTGTTGGGAATGGCGTGATCCGGGAAAACCACTTTTG < 41bp 0.556925453003053 0.833293048324359 NA NA prediction 0.552735190642611 Functional Gain - GPN1 ENSG00000198522 CDS Human protein_coding chr2:27852011 chr2:27852010 stopgain 0.997 1 20 hm7G_associated_SNPs_17113 0 0 1 0 1 GPN1 chr2:27852036 5'GT 27852036 Upstream 27bp 16254 chr1 175063311 175063311 1 + G T UCEC 175063312 + 175063292 175063332 41 CCTGACGGGCCTGAAGCCAGGAGAGGCATACAAGGTCTACG CCTGACGGGCCTGAAGCCATGAGAGGCATACAAGGTCTACG < 41bp 0.444222767641048 0.776361385194623 NA NA prediction 0.552722770389246 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175063312 chr1:175063311 stopgain 0.935 0 20 hm7G_associated_SNPs_17114 0 0 0 0 1 TNN chr1:175063389 5'GT 175063389 Upstream 79bp 16255 chr7 129948183 129948183 1 + G T LUSC 129948184 + 129948164 129948204 41 GACGCGGTCCCGAAATCCTGGAAGCTCCTGCATTGGTGCTG GACGCGGTCCCGAAATCCTTGAAGCTCCTGCATTGGTGCTG < 41bp 0.435596905774439 0.776343912221379 NA NA prediction 0.552687824442758 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948184 chr7:129948183 stopgain 0.549 1 20 hm7G_associated_SNPs_17118 0 0 0 0 2 CPA4 chr7:129948147 3'AG 129948147 Downstream 37bp 16256 chr7 129948183 129948183 1 + G T LUSC 129948184 + 129948164 129948204 41 GACGCGGTCCCGAAATCCTGGAAGCTCCTGCATTGGTGCTG GACGCGGTCCCGAAATCCTTGAAGCTCCTGCATTGGTGCTG < 41bp 0.435596905774439 0.776343912221379 NA NA prediction 0.552687824442758 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129948184 chr7:129948183 stopgain 0.549 1 20 hm7G_associated_SNPs_17118 0 0 0 0 2 CPA4 chr7:129948237 5'GT 129948237 Upstream 55bp 16257 chr15 91421384 91421384 1 + G T LUAD 91421385 + 91421365 91421405 41 TGCGCATGCTGGATGGCGAGGTGACAGATGCAGTGGAGGCA TGCGCATGCTGGATGGCGATGTGACAGATGCAGTGGAGGCA < 41bp 0.578590603297888 0.854931112317377 NA NA prediction 0.552681018038978 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91421385 chr15:91421384 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_17119 0 0 1 0 1 FURIN chr15:91421362 3'AG 91421362 Downstream 23bp 16258 chr6 27222902 27222902 1 + G T GBM 27222903 + 27222883 27222923 41 CTCCCCCAGCCTCCGCCTAGGGCGCCAGGTAAGAGAAAAAA CTCCCCCAGCCTCCGCCTATGGCGCCAGGTAAGAGAAAAAA < 41bp 0.575324292979466 0.851633454267254 NA NA prediction 0.552618322575578 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27222903 chr6:27222902 nonsynonymous SNV 0.922 4 20 hm7G_associated_SNPs_17120 0 0 0 0 1 PRSS16 chr6:27222910 5'GT 27222910 Upstream 9bp 16259 chr14 95108162 95108162 1 + G T STAD 95108163 + 95108143 95108183 41 TACAGAGCAGCAGACCCAGGGGAAGCTCGGGGCCTGGGAGA TACAGAGCAGCAGACCCAGTGGAAGCTCGGGGCCTGGGAGA < 41bp 0.540781422423469 0.817087112920129 NA NA prediction 0.552611380993321 Functional Gain - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95108163 chr14:95108162 . . 0 20 hm7G_associated_SNPs_17121 0 0 0 0 1 SERPINA13P chr14:95108237 5'GT 95108237 Upstream 76bp 16260 chr14 89338042 89338042 1 + G T LUAD 89338043 + 89338023 89338063 41 GAAGAGGCAGCTGATGTCTGGTACAACTTGGGACATGTAGC GAAGAGGCAGCTGATGTCTTGTACAACTTGGGACATGTAGC < 41bp 0.558542129760163 0.834837118297394 NA NA prediction 0.552589977074462 Functional Gain - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89338043 chr14:89338042 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17122 0 0 1 0 1 TTC8 chr14:89338067 5'GT 89338067 Upstream 26bp 16261 chr5 50687165 50687165 1 + G T KIRP 50687166 + 50687146 50687186 41 CAGTCCAGAGAGACACGACGGTGGCTTACAGGCTAACCCAG CAGTCCAGAGAGACACGACTGTGGCTTACAGGCTAACCCAG < 41bp 0.566245898432941 0.842538976017847 NA NA prediction 0.552586155169811 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50687166 chr5:50687165 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_17124 0 0 0 0 1 ISL1 chr5:50687108 3'AG 50687108 Downstream 58bp 16262 chr3 193364953 193364953 1 + G T OV 193364954 + 193364934 193364974 41 GAGAGTCTGTTGAACAACAGGCTGATAGTTTCAAAGGTAAG GAGAGTCTGTTGAACAACATGCTGATAGTTTCAAAGGTAAG < 41bp 0.472558580798041 0.776278438792136 NA NA prediction 0.552556877584271 Functional Gain - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193364954 chr3:193364953 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17126 0 0 1 0 2 OPA1 chr3:193364854 3'AG 193364854 Downstream 100bp 16263 chr3 193364953 193364953 1 + G T OV 193364954 + 193364934 193364974 41 GAGAGTCTGTTGAACAACAGGCTGATAGTTTCAAAGGTAAG GAGAGTCTGTTGAACAACATGCTGATAGTTTCAAAGGTAAG < 41bp 0.472558580798041 0.776278438792136 NA NA prediction 0.552556877584271 Functional Gain - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193364954 chr3:193364953 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17126 0 0 1 0 2 OPA1 chr3:193364969 5'GT 193364969 Upstream 17bp 16264 chr2 172930372 172930372 1 + G T LGG 172930373 + 172930353 172930393 41 ATAGATGCTCTTGTTCATCGGGAAATCATCAGTCATAATGC ATAGATGCTCTTGTTCATCTGGAAATCATCAGTCATAATGC < 41bp 0.566395891493043 0.842669191734385 NA NA prediction 0.552546600482685 Functional Gain - METAP1D ENSG00000172878 CDS Human protein_coding chr2:172930373 chr2:172930372 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_17127 0 0 1 0 1 METAP1D chr2:172930332 3'AG 172930332 Downstream 41bp 16265 chr11 121038900 121038900 1 + G T LUAD 121038901 + 121038881 121038921 41 TGGATATCAAGATCTCCTTGGATTCTGTTGTGAAGCCTATG TGGATATCAAGATCTCCTTTGATTCTGTTGTGAAGCCTATG < 41bp 0.447924156331657 0.776272100363812 NA NA prediction 0.552544200727624 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121038901 chr11:121038900 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_17128 0 0 1 0 1 TECTA chr11:121038926 5'GT 121038926 Upstream 27bp 16266 chr18 29797891 29797891 1 + G T UCS 29797892 + 29797872 29797912 41 AGGAAGAAATATCGTGAAAGGATGAGCTCAAATCGACCAAA AGGAAGAAATATCGTGAAATGATGAGCTCAAATCGACCAAA < 41bp 0.55011531964351 0.826359687335796 NA NA prediction 0.55248873538457 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29797892 chr18:29797891 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_17130 0 0 1 0 1 MEP1B chr18:29797928 5'GT 29797928 Upstream 38bp 16267 chr11 107920739 107920739 1 + G T SARC 107920740 + 107920720 107920760 41 AACTAGAGATTACTTTAATGGGTAAACAGGGCAGCAATAAA AACTAGAGATTACTTTAATTGGTAAACAGGGCAGCAATAAA < 41bp 0.549264286595001 0.825477961527501 NA NA prediction 0.552427349864998 Functional Gain - CUL5 ENSG00000166266 CDS Human protein_coding chr11:107920740 chr11:107920739 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_17133 0 0 1 2 1 CUL5 chr11:107920793 5'GT 107920793 Upstream 55bp 16268 chr7 100867103 100867103 1 + G T LUSC 100867104 + 100867084 100867124 41 ACTGCACTGTGCGCTGTCTGGGGACCCACCAGGAGACCAGG ACTGCACTGTGCGCTGTCTTGGGACCCACCAGGAGACCAGG < 41bp 0.586689603428788 0.862882431547847 NA NA prediction 0.552385656238119 Functional Gain - ZNHIT1 ENSG00000106400 CDS Human protein_coding chr7:100867104 chr7:100867103 synonymous SNV . 0 20 hm7G_associated_SNPs_17134 0 0 1 0 1 ZNHIT1 chr7:100867123 5'GT 100867123 Upstream 21bp 16269 chr22 24911294 24911294 1 + G T ACC 24911295 + 24911275 24911315 41 TTATGTACAGCATCAACGGGGCTGAGATCATCTTCAACCCC TTATGTACAGCATCAACGGTGCTGAGATCATCTTCAACCCC < 41bp 0.444057132480919 0.776186234065075 NA NA prediction 0.552372468130151 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24911295 chr22:24911294 synonymous SNV . 0 20 hm7G_associated_SNPs_17137 0 0 0 0 1 UPB1 chr22:24911338 5'GT 24911338 Upstream 45bp 16270 chr4 26417218 26417218 1 + G T PAAD 26417219 + 26417199 26417239 41 GTGTGCATTTATTGGGATAGGAAATAGTGACCAAGAAATGC GTGTGCATTTATTGGGATATGAAATAGTGACCAAGAAATGC < 41bp 0.464998014735786 0.776183804970458 NA NA prediction 0.552367609940917 Functional Gain - RBPJ ENSG00000168214 CDS Human protein_coding chr4:26417219 chr4:26417218 stopgain 0.993 1 20 hm7G_associated_SNPs_17139 0 0 1 0 1 RBPJ chr4:26417262 5'GT 26417262 Upstream 45bp 16271 chr5 133473755 133473755 1 + G T LUAD 133473756 + 133473736 133473776 41 TTCTCATTTTTCAGCACAAGGCCAATCAGCCCCCCCACGGT TTCTCATTTTTCAGCACAATGCCAATCAGCCCCCCCACGGT < 41bp 0.449067389530892 0.776158768509618 NA NA prediction 0.552317537019235 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133473756 chr5:133473755 nonsynonymous SNV 0.948 0 20 hm7G_associated_SNPs_17141 0 0 1 0 1 TCF7 chr5:133473750 3'AG 133473750 Downstream 6bp 16272 chr3 178543412 178543412 1 + G T COAD 178543413 + 178543393 178543433 41 TCAGGGACCATGACCTCCTGGACAAAAGGAAAACAGTCACA TCAGGGACCATGACCTCCTTGACAAAAGGAAAACAGTCACA < 41bp 0.480779650346951 0.776155174200225 NA NA prediction 0.552310348400451 Functional Gain - KCNMB2 ENSG00000197584 CDS Human protein_coding chr3:178543413 chr3:178543412 synonymous SNV . 0 20 hm7G_associated_SNPs_17142 0 0 0 0 2 KCNMB2 chr3:178543376 3'AG 178543376 Downstream 37bp 16273 chr3 178543412 178543412 1 + G T COAD 178543413 + 178543393 178543433 41 TCAGGGACCATGACCTCCTGGACAAAAGGAAAACAGTCACA TCAGGGACCATGACCTCCTTGACAAAAGGAAAACAGTCACA < 41bp 0.480779650346951 0.776155174200225 NA NA prediction 0.552310348400451 Functional Gain - KCNMB2 ENSG00000197584 CDS Human protein_coding chr3:178543413 chr3:178543412 synonymous SNV . 0 20 hm7G_associated_SNPs_17142 0 0 0 0 2 KCNMB2 chr3:178543501 5'GT 178543501 Upstream 90bp 16274 chr19 10405307 10405307 1 + G T HNSC 10405308 + 10405288 10405328 41 CTCCCGGACCGTCACTGTGGGCGTGGAATGTGAGTGGGGGC CTCCCGGACCGTCACTGTGTGCGTGGAATGTGAGTGGGGGC < 41bp 0.568243330630246 0.844391277809824 NA NA prediction 0.552295894359157 Functional Gain - ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10405308 chr19:10405307 nonsynonymous SNV 0.908 3 20 hm7G_associated_SNPs_17143 0 0 1 0 1 ICAM5 chr19:10405316 5'GT 10405316 Upstream 10bp 16275 chr1 17552330 17552330 1 + G T LUAD 17552331 + 17552311 17552351 41 CTGGCGCTGGGGCCCTGAGGGCTATGGGGCTATCTTGCTGG CTGGCGCTGGGGCCCTGAGTGCTATGGGGCTATCTTGCTGG < 41bp 0.445196320026261 0.776141160447051 NA NA prediction 0.552282320894103 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17552331 chr1:17552330 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_17145 0 0 0 0 2 PADI1 chr1:17552306 3'AG 17552306 Downstream 25bp 16276 chr1 17552330 17552330 1 + G T LUAD 17552331 + 17552311 17552351 41 CTGGCGCTGGGGCCCTGAGGGCTATGGGGCTATCTTGCTGG CTGGCGCTGGGGCCCTGAGTGCTATGGGGCTATCTTGCTGG < 41bp 0.445196320026261 0.776141160447051 NA NA prediction 0.552282320894103 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17552331 chr1:17552330 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_17145 0 0 0 0 2 PADI1 chr1:17552423 5'GT 17552423 Upstream 94bp 16277 chr6 43412996 43412996 1 + G T UCEC 43412997 + 43412977 43413017 41 GGCAGTGCTCTTTGCAGCAGGCACCCTTCAAGCAGCTGCCA GGCAGTGCTCTTTGCAGCATGCACCCTTCAAGCAGCTGCCA < 41bp 0.432520843314617 0.776138899050439 NA NA prediction 0.552277798100878 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43412997 chr6:43412996 nonsynonymous SNV 0.926 5 20 hm7G_associated_SNPs_17146 0 0 1 0 1 ABCC10 chr6:43413052 5'GT 43413052 Upstream 57bp 16278 chr5 34923317 34923317 1 + G T UCEC 34923318 + 34923298 34923338 41 TTCACCATTTTGGATAATAGGATATGGTTTCGGAACTTTCA TTCACCATTTTGGATAATATGATATGGTTTCGGAACTTTCA < 41bp 0.502950891229516 0.779075782734447 NA NA prediction 0.552249783009862 Functional Gain - BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34923318 chr5:34923317 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_17150 0 0 1 0 2 BRIX1 chr5:34923238 3'AG 34923238 Downstream 80bp 16279 chr5 34923317 34923317 1 + G T UCEC 34923318 + 34923298 34923338 41 TTCACCATTTTGGATAATAGGATATGGTTTCGGAACTTTCA TTCACCATTTTGGATAATATGATATGGTTTCGGAACTTTCA < 41bp 0.502950891229516 0.779075782734447 NA NA prediction 0.552249783009862 Functional Gain - BRIX1 ENSG00000113460 CDS Human protein_coding chr5:34923318 chr5:34923317 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_17150 0 0 1 0 2 BRIX1 chr5:34923339 5'GT 34923339 Upstream 23bp 16280 chr7 36338681 36338681 1 + G T LUAD 36338682 + 36338662 36338702 41 GGATAACTGGTCTTGGGGCGGGGTGGCTTCTGAACACTGCC GGATAACTGGTCTTGGGGCTGGGTGGCTTCTGAACACTGCC < 41bp 0.462632687379112 0.776117980628631 NA NA prediction 0.552235961257262 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36338682 chr7:36338681 nonsynonymous SNV 0.917 5 20 hm7G_associated_SNPs_17153 0 0 0 0 1 EEPD1 chr7:36338616 3'AG 36338616 Downstream 66bp 16281 chr6 15512474 15512474 1 + G T GBM 15512475 + 15512455 15512495 41 TGTGCAAAGAGGGGATCAAGGTGCACAGGACCGTGCAGCAG TGTGCAAAGAGGGGATCAATGTGCACAGGACCGTGCAGCAG < 41bp 0.453275321786704 0.776108768266206 NA NA prediction 0.552217536532411 Functional Gain - JARID2 ENSG00000008083 CDS Human protein_coding chr6:15512475 chr6:15512474 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17154 0 0 1 0 1 JARID2 chr6:15512439 3'AG 15512439 Downstream 36bp 16282 chr14 21769217 21769217 1 + G T LUAD 21769218 + 21769198 21769238 41 TCGGAGACCGCAAGGCGCGGGCAGAAGGCGGGATGGCGGCA TCGGAGACCGCAAGGCGCGTGCAGAAGGCGGGATGGCGGCA < 41bp 0.574469407434218 0.850577117666677 NA NA prediction 0.552215420464918 Functional Gain - RPGRIP1 ENSG00000092200 CDS Human protein_coding chr14:21769218 chr14:21769217 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_17155 0 0 0 0 1 RPGRIP1 chr14:21769125 3'AG 21769125 Downstream 93bp 16283 chr1 231344937 231344937 1 + G T LUSC 231344938 + 231344918 231344958 41 GCAAGGATGACAAGGCCTGGGCCATGTATGTGGACAACAAC GCAAGGATGACAAGGCCTGTGCCATGTATGTGGACAACAAC < 41bp 0.443483032978419 0.776105901981732 NA NA prediction 0.552211803963464 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231344938 chr1:231344937 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17156 0 0 0 0 1 TRIM67 chr1:231344996 5'GT 231344996 Upstream 60bp 16284 chrX 54578402 54578402 1 + G T HNSC 54578403 + 54578383 54578423 41 AAGCTGTCCTAGCTGACTGGGTGAGGTGAGGAGGGGGTTAG AAGCTGTCCTAGCTGACTGTGTGAGGTGAGGAGGGGGTTAG < 41bp 0.456120130292943 0.776092910372519 NA NA prediction 0.552185820745037 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54578403 chrX:54578402 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17158 0 0 1 0 1 GNL3L chrX:54578407 5'GT 54578407 Upstream 6bp 16285 chr6 35199506 35199506 1 + G T UCEC 35199507 + 35199487 35199527 41 ACCTATCCTGCACAGATGTGGACGAGTGTGCCGAGGGCAAC ACCTATCCTGCACAGATGTTGACGAGTGTGCCGAGGGCAAC < 41bp 0.573078180569644 0.849167590259335 NA NA prediction 0.552178819379381 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35199507 chr6:35199506 synonymous SNV . 0 20 hm7G_associated_SNPs_17159 0 0 0 0 1 SCUBE3 chr6:35199502 3'AG 35199502 Downstream 5bp 16286 chr19 52819189 52819189 1 + G T LUAD 52819190 + 52819170 52819210 41 GCAAAAAATTCAGATGGGAGGGAGTGCATCAAAGGTGTGAA GCAAAAAATTCAGATGGGATGGAGTGCATCAAAGGTGTGAA < 41bp 0.553642078383591 0.829729318259406 NA NA prediction 0.55217447975163 Functional Gain - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52819190 chr19:52819189 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_17160 0 0 1 0 1 ZNF480 chr19:52819215 5'GT 52819215 Upstream 27bp 16287 chr5 148632376 148632376 1 + G T BLCA 148632377 + 148632357 148632397 41 GAAGAAACCGACTGCCCAAGGATGTAGACAGGACCCGTTTA GAAGAAACCGACTGCCCAATGATGTAGACAGGACCCGTTTA < 41bp 0.56505046631674 0.841107715708483 NA NA prediction 0.552114498783487 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148632377 chr5:148632376 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17165 0 0 0 0 2 ABLIM3 chr5:148632320 3'AG 148632320 Downstream 57bp 16288 chr5 148632376 148632376 1 + G T BLCA 148632377 + 148632357 148632397 41 GAAGAAACCGACTGCCCAAGGATGTAGACAGGACCCGTTTA GAAGAAACCGACTGCCCAATGATGTAGACAGGACCCGTTTA < 41bp 0.56505046631674 0.841107715708483 NA NA prediction 0.552114498783487 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148632377 chr5:148632376 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17165 0 0 0 0 2 ABLIM3 chr5:148632400 5'GT 148632400 Upstream 25bp 16289 chr13 26828829 26828829 1 + G T UCEC 26828830 + 26828810 26828850 41 GCGAGCGGGAGCGGGTCGAGGACCTGTTTGAATACGAGGGC GCGAGCGGGAGCGGGTCGATGACCTGTTTGAATACGAGGGC < 41bp 0.563231060947367 0.839287247721193 NA NA prediction 0.552112373547651 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26828830 chr13:26828829 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17166 0 0 1 0 1 CDK8 chr13:26828906 5'GT 26828906 Upstream 78bp 16290 chr12 3029954 3029954 1 + G T SKCM 3029955 + 3029935 3029975 41 CTACTTGAGAAGAGGCAAAGGAAAAAGCGCCTTGAGCCATT CTACTTGAGAAGAGGCAAATGAAAAAGCGCCTTGAGCCATT < 41bp 0.576297043009932 0.852350290810844 NA NA prediction 0.552106495601824 Functional Gain - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3029955 chr12:3029954 nonsynonymous SNV 0.963 5 20 hm7G_associated_SNPs_17167 0 0 1 0 1 TULP3 chr12:3029929 3'AG 3029929 Downstream 26bp 16291 chr7 45614698 45614698 1 + G T UCEC 45614699 + 45614679 45614719 41 GCGCAGCCTGCTGGCCATAGGCTTTGGGCTCGTGGTGGCTG GCGCAGCCTGCTGGCCATATGCTTTGGGCTCGTGGTGGCTG < 41bp 0.455520300962376 0.776051897149265 NA NA prediction 0.552103794298529 Functional Gain - ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45614699 chr7:45614698 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_17168 0 0 1 0 1 ADCY1 chr7:45614781 5'GT 45614781 Upstream 84bp 16292 chr17 54403586 54403586 1 + G T UCEC 54403587 + 54403567 54403607 41 TTATTCTTTACACAGAATAGGAAGGAGATTCGCTTGCTTTG TTATTCTTTACACAGAATATGAAGGAGATTCGCTTGCTTTG < 41bp 0.486239405889557 0.776037419384662 NA NA prediction 0.552074838769323 Functional Gain - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54403587 chr17:54403586 stopgain 1.000 0 20 hm7G_associated_SNPs_17172 0 0 0 0 1 ANKFN1 chr17:54403582 3'AG 54403582 Downstream 5bp 16293 chr7 780463 780463 1 + G T LUAD 780464 + 780444 780484 41 TCTCATGCGCAGGTCCGGCGGGCGGTGGCCTCCGTGGTGGG TCTCATGCGCAGGTCCGGCTGGCGGTGGCCTCCGTGGTGGG < 41bp 0.437371969546704 0.776024011157036 NA NA prediction 0.552048022314071 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:780464 chr7:780463 nonsynonymous SNV 0.524 0 20 hm7G_associated_SNPs_17173 0 0 1 0 1 DNAAF5 chr7:780456 3'AG 780456 Downstream 8bp 16294 chr4 145658984 145658984 1 + G T UCEC 145658985 + 145658965 145659005 41 CAAGTGCCTCTGTAAAAAAGGATATCTTGGTCCTCAATGTG CAAGTGCCTCTGTAAAAAATGATATCTTGGTCCTCAATGTG < 41bp 0.537900969251819 0.813918130643832 NA NA prediction 0.552034322784025 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145658985 chr4:145658984 stopgain 1.000 1 20 hm7G_associated_SNPs_17174 0 0 0 0 1 HHIP chr4:145658916 3'AG 145658916 Downstream 69bp 16295 chr1 33149691 33149691 1 - C A STAD 33149690 - 33149670 33149710 41 ATGGCTCTCTCTTTTTAAAGGGCTATGCTACTACCCAAGAG ATGGCTCTCTCTTTTTAAATGGCTATGCTACTACCCAAGAG < 41bp 0.469669048713557 0.776016233171947 NA NA prediction 0.552032466343895 Functional Gain - SYNC ENSG00000162520 splicing Human protein_coding chr1:33149690 chr1:33149691 . 0.999 0 20 hm7G_associated_SNPs_17175 0 0 0 0 1 SYNC chr1:33149611 5'GT 33149611 Upstream 81bp 16296 chr20 33067504 33067504 1 + G T COAD 33067505 + 33067485 33067525 41 TGTTTGAATATGCAGGGAAGGATAACTACTGCTTGCAGATA TGTTTGAATATGCAGGGAATGATAACTACTGCTTGCAGATA < 41bp 0.557944158347509 0.833946881376506 NA NA prediction 0.552005446057995 Functional Gain - ITCH ENSG00000078747 CDS Human protein_coding chr20:33067505 chr20:33067504 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17177 0 0 1 0 2 ITCH chr20:33067435 3'AG 33067435 Downstream 70bp 16297 chr20 33067504 33067504 1 + G T COAD 33067505 + 33067485 33067525 41 TGTTTGAATATGCAGGGAAGGATAACTACTGCTTGCAGATA TGTTTGAATATGCAGGGAATGATAACTACTGCTTGCAGATA < 41bp 0.557944158347509 0.833946881376506 NA NA prediction 0.552005446057995 Functional Gain - ITCH ENSG00000078747 CDS Human protein_coding chr20:33067505 chr20:33067504 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17177 0 0 1 0 2 ITCH chr20:33067594 5'GT 33067594 Upstream 91bp 16298 chr9 37305697 37305697 1 + G T LUAD 37305698 + 37305678 37305718 41 TGACCGATGTCATATGCTAGGCCACTATACAGATGTGAGTA TGACCGATGTCATATGCTATGCCACTATACAGATGTGAGTA < 41bp 0.463939089956415 0.775992402547814 NA NA prediction 0.551984805095629 Functional Gain - ZCCHC7 ENSG00000147905 CDS Human protein_coding chr9:37305698 chr9:37305697 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17178 0 0 1 0 1 ZCCHC7 chr9:37305711 5'GT 37305711 Upstream 15bp 16299 chrX 118143174 118143174 1 + G T CESC 118143175 + 118143155 118143195 41 GAAGAACTGAAGGAACGAAGGAAGCTTTATGAAGAGGAAAT GAAGAACTGAAGGAACGAATGAAGCTTTATGAAGAGGAAAT < 41bp 0.562730185982816 0.838722331754597 NA NA prediction 0.551984291543563 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118143175 chrX:118143174 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_17179 0 0 1 0 2 LONRF3 chrX:118143089 3'AG 118143089 Downstream 86bp 16300 chrX 118143174 118143174 1 + G T CESC 118143175 + 118143155 118143195 41 GAAGAACTGAAGGAACGAAGGAAGCTTTATGAAGAGGAAAT GAAGAACTGAAGGAACGAATGAAGCTTTATGAAGAGGAAAT < 41bp 0.562730185982816 0.838722331754597 NA NA prediction 0.551984291543563 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118143175 chrX:118143174 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_17179 0 0 1 0 2 LONRF3 chrX:118143210 5'GT 118143210 Upstream 37bp 16301 chr21 43697010 43697010 1 + G T LUSC 43697011 + 43696991 43697031 41 CTTGTCCCCTGCAGGTGTCGGCACATCTGAAGCTTCAGGAG CTTGTCCCCTGCAGGTGTCTGCACATCTGAAGCTTCAGGAG < 41bp 0.569090460169517 0.845081027802824 NA NA prediction 0.551981135266614 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43697011 chr21:43697010 synonymous SNV . 0 20 hm7G_associated_SNPs_17181 0 0 0 0 2 ABCG1 chr21:43697005 3'AG 43697005 Downstream 6bp 16302 chr21 43697010 43697010 1 + G T LUSC 43697011 + 43696991 43697031 41 CTTGTCCCCTGCAGGTGTCGGCACATCTGAAGCTTCAGGAG CTTGTCCCCTGCAGGTGTCTGCACATCTGAAGCTTCAGGAG < 41bp 0.569090460169517 0.845081027802824 NA NA prediction 0.551981135266614 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43697011 chr21:43697010 synonymous SNV . 0 20 hm7G_associated_SNPs_17181 0 0 0 0 2 ABCG1 chr21:43697055 5'GT 43697055 Upstream 46bp 16303 chr2 103006523 103006523 1 + G T ACC 103006524 + 103006504 103006544 41 TTTCTTTTCTAGCAGACATGGCTGATATCCCAGGCCACGTC TTTCTTTTCTAGCAGACATTGCTGATATCCCAGGCCACGTC < 41bp 0.468263459621889 0.775987790617869 NA NA prediction 0.551975581235738 Functional Gain - IL18R1 ENSG00000115604 CDS Human protein_coding chr2:103006524 chr2:103006523 nonsynonymous SNV 0.075 0 20 hm7G_associated_SNPs_17182 0 0 0 0 2 IL18R1 chr2:103006516 3'AG 103006516 Downstream 8bp 16304 chr2 103006523 103006523 1 + G T ACC 103006524 + 103006504 103006544 41 TTTCTTTTCTAGCAGACATGGCTGATATCCCAGGCCACGTC TTTCTTTTCTAGCAGACATTGCTGATATCCCAGGCCACGTC < 41bp 0.468263459621889 0.775987790617869 NA NA prediction 0.551975581235738 Functional Gain - IL18R1 ENSG00000115604 CDS Human protein_coding chr2:103006524 chr2:103006523 nonsynonymous SNV 0.075 0 20 hm7G_associated_SNPs_17182 0 0 0 0 2 IL18R1 chr2:103006519 3'AG 103006519 Downstream 5bp 16305 chr13 40293857 40293857 1 + G T LUSC 40293858 + 40293838 40293878 41 TGTATCAGCCAGCAATTTAGGCACAGCTGACATGGCCACTT TGTATCAGCCAGCAATTTATGCACAGCTGACATGGCCACTT < 41bp 0.555869606089564 0.831847303291272 NA NA prediction 0.551955394403414 Functional Gain - COG6 ENSG00000133103 CDS Human protein_coding chr13:40293858 chr13:40293857 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17184 0 0 1 0 1 COG6 chr13:40293797 3'AG 40293797 Downstream 61bp 16306 chr22 26707890 26707890 1 + G T LUSC 26707891 + 26707871 26707911 41 ATCGAATGCATCAATGTGCGGGACCCATACTGGAATGACAC ATCGAATGCATCAATGTGCTGGACCCATACTGGAATGACAC < 41bp 0.448343423725526 0.775975138614257 NA NA prediction 0.551950277228514 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26707891 chr22:26707890 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17185 0 0 0 0 1 SEZ6L chr22:26707928 5'GT 26707928 Upstream 39bp 16307 chr19 39123090 39123090 1 + G T LUAD 39123091 + 39123071 39123111 41 AAGCCCTGGATGAAAACATGGACCTCTTGGAAGGTATAACT AAGCCCTGGATGAAAACATTGACCTCTTGGAAGGTATAACT < 41bp 0.448773556420039 0.775968666093492 NA NA prediction 0.551937332186985 Functional Gain - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39123091 chr19:39123090 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17186 0 0 1 0 1 EIF3K chr19:39123070 3'AG 39123070 Downstream 21bp 16308 chr10 90354520 90354520 1 + G T UCEC 90354521 + 90354501 90354541 41 TTTATGTAGGCCATTCACAGGGTACTACTATTGGTATGCCA TTTATGTAGGCCATTCACATGGTACTACTATTGGTATGCCA < 41bp 0.539742514498152 0.815704890543653 NA NA prediction 0.551924752091001 Functional Gain - LIPJ ENSG00000204022 CDS Human protein_coding chr10:90354521 chr10:90354520 nonsynonymous SNV 0.532 3 20 hm7G_associated_SNPs_17188 0 0 0 0 2 LIPJ chr10:90354424 3'AG 90354424 Downstream 97bp 16309 chr10 90354520 90354520 1 + G T UCEC 90354521 + 90354501 90354541 41 TTTATGTAGGCCATTCACAGGGTACTACTATTGGTATGCCA TTTATGTAGGCCATTCACATGGTACTACTATTGGTATGCCA < 41bp 0.539742514498152 0.815704890543653 NA NA prediction 0.551924752091001 Functional Gain - LIPJ ENSG00000204022 CDS Human protein_coding chr10:90354521 chr10:90354520 nonsynonymous SNV 0.532 3 20 hm7G_associated_SNPs_17188 0 0 0 0 2 LIPJ chr10:90354533 5'GT 90354533 Upstream 14bp 16310 chr1 156628918 156628918 1 + G T UCEC 156628919 + 156628899 156628939 41 CCCTTCCAGCCCCATGCCAGGTCCCTAGGGGGCAAGGCCTT CCCTTCCAGCCCCATGCCATGTCCCTAGGGGGCAAGGCCTT < 41bp 0.55373484102812 0.829694355805054 NA NA prediction 0.551919029553868 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156628919 chr1:156628918 nonsynonymous SNV 0.049 1 20 hm7G_associated_SNPs_17189 0 0 0 0 1 BCAN chr1:156628819 3'AG 156628819 Downstream 100bp 16311 chr3 195953840 195953840 1 + G T rs145068718 195953841 + 195953821 195953861 41 CTTCTCCTCCTCTAGCCCTGGGCCCTGTGGAACTTGCCCTC CTTCTCCTCCTCTAGCCCTTGGCCCTGTGGAACTTGCCCTC < 41bp 0.441754633791746 0.775955117235751 NA NA prediction 0.551910234471502 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195953841 chr3:195953840 synonymous SNV . 0 20 hm7G_associated_SNPs_17190 0 0 0 0 1 SLC51A chr3:195953836 3'AG 195953836 Downstream 5bp 16312 chr10 26505791 26505791 1 + G T COAD 26505792 + 26505772 26505812 41 GGGTCGGAAGATGGCTCTGGGGATTCCGAGAATCCCGGCAC GGGTCGGAAGATGGCTCTGTGGATTCCGAGAATCCCGGCAC < 41bp 0.570647703783168 0.846600962323372 NA NA prediction 0.551906517080408 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26505792 chr10:26505791 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_17191 0 0 0 0 1 GAD2 chr10:26505814 5'GT 26505814 Upstream 24bp 16313 chr13 51921333 51921333 1 + G T UCEC 51921334 + 51921314 51921354 41 CCTATGGCCTCGTCCTTCAGGTCCCCATGATGCACCAAACG CCTATGGCCTCGTCCTTCATGTCCCCATGATGCACCAAACG < 41bp 0.452839046639454 0.775947202344777 NA NA prediction 0.551894404689554 Functional Gain - SERPINE3 ENSG00000253309 CDS Human protein_coding chr13:51921334 chr13:51921333 nonsynonymous SNV 0.704 3 20 hm7G_associated_SNPs_17192 0 0 0 0 1 SERPINE3 chr13:51921370 5'GT 51921370 Upstream 38bp 16314 chr2 131127343 131127343 1 + G T UCEC 131127344 + 131127324 131127364 41 CCCCCCTTACTCAGATAAAGGAGAAGTGGCTGAATGAGGAC CCCCCCTTACTCAGATAAATGAGAAGTGGCTGAATGAGGAC < 41bp 0.580968151167234 0.856908351746702 NA NA prediction 0.551880401158935 Functional Gain - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131127344 chr2:131127343 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_17193 0 0 1 0 2 PTPN18 chr2:131127338 3'AG 131127338 Downstream 6bp 16315 chr2 131127343 131127343 1 + G T UCEC 131127344 + 131127324 131127364 41 CCCCCCTTACTCAGATAAAGGAGAAGTGGCTGAATGAGGAC CCCCCCTTACTCAGATAAATGAGAAGTGGCTGAATGAGGAC < 41bp 0.580968151167234 0.856908351746702 NA NA prediction 0.551880401158935 Functional Gain - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131127344 chr2:131127343 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_17193 0 0 1 0 2 PTPN18 chr2:131127400 5'GT 131127400 Upstream 58bp 16316 chr13 25901578 25901578 1 + G T UCEC 25901579 + 25901559 25901599 41 CTTTTATAGATTTGTCAATGGCTATGCAGAAAATTTATCAA CTTTTATAGATTTGTCAATTGCTATGCAGAAAATTTATCAA < 41bp 0.542314961624022 0.818242179628191 NA NA prediction 0.551854436008338 Functional Gain - NUP58 ENSG00000139496 CDS Human protein_coding chr13:25901579 chr13:25901578 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17195 0 0 1 0 2 NUP58 chr13:25901568 3'AG 25901568 Downstream 11bp 16317 chr13 25901578 25901578 1 + G T UCEC 25901579 + 25901559 25901599 41 CTTTTATAGATTTGTCAATGGCTATGCAGAAAATTTATCAA CTTTTATAGATTTGTCAATTGCTATGCAGAAAATTTATCAA < 41bp 0.542314961624022 0.818242179628191 NA NA prediction 0.551854436008338 Functional Gain - NUP58 ENSG00000139496 CDS Human protein_coding chr13:25901579 chr13:25901578 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17195 0 0 1 0 2 NUP58 chr13:25901650 5'GT 25901650 Upstream 73bp 16318 chr7 142562421 142562421 1 + G T LUAD 142562422 + 142562402 142562442 41 CCCAGGCTGCACTGCAACGGGGAGGGCAAGTGGATGGTAGC CCCAGGCTGCACTGCAACGTGGAGGGCAAGTGGATGGTAGC < 41bp 0.443373535653964 0.775893012725673 NA NA prediction 0.551786025451345 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142562422 chr7:142562421 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_17200 0 0 0 0 1 EPHB6 chr7:142562504 5'GT 142562504 Upstream 84bp 16319 chr12 69991044 69991044 1 + G T THCA 69991045 + 69991025 69991065 41 AAACTCATTCACTTTTCTGGGGTTGCCCTTGGTGAGTGATT AAACTCATTCACTTTTCTGTGGTTGCCCTTGGTGAGTGATT < 41bp 0.453045257971282 0.775861980005418 NA NA prediction 0.551723960010837 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69991045 chr12:69991044 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17205 0 0 1 0 1 CCT2 chr12:69991055 5'GT 69991055 Upstream 12bp 16320 chr19 17452006 17452006 1 + G T LUAD 17452007 + 17451987 17452027 41 TCCTGGTGCTGAACAAGTCGGACCTGCTGTCCCCGGAGGGC TCCTGGTGCTGAACAAGTCTGACCTGCTGTCCCCGGAGGGC < 41bp 0.440822591045045 0.775861157856858 NA NA prediction 0.551722315713716 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17452007 chr19:17452006 synonymous SNV . 0 20 hm7G_associated_SNPs_17206 0 0 1 0 1 GTPBP3 chr19:17451916 3'AG 17451916 Downstream 91bp 16321 chr1 169346175 169346175 1 + G T UCEC 169346176 + 169346156 169346196 41 CTGAAAGAAGGTTACTACAGGACAAAGAAGGTCTTTCAAAC CTGAAAGAAGGTTACTACATGACAAAGAAGGTCTTTCAAAC < 41bp 0.477882961975117 0.775857296363432 NA NA prediction 0.551714592726865 Functional Gain - BLZF1 ENSG00000117475 CDS Human protein_coding chr1:169346176 chr1:169346175 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_17207 0 0 0 0 1 BLZF1 chr1:169346217 5'GT 169346217 Upstream 43bp 16322 chr2 27280267 27280267 1 + G T LUAD 27280268 + 27280248 27280288 41 CCAGCCCCCCTCCCCCGCCGGCTTTCCCCTCCAGATACACT CCAGCCCCCCTCCCCCGCCTGCTTTCCCCTCCAGATACACT < 41bp 0.437305610309315 0.775836901914622 NA NA prediction 0.551673803829244 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280268 chr2:27280267 synonymous SNV . 0 20 hm7G_associated_SNPs_17209 0 0 1 0 2 AGBL5 chr2:27280171 3'AG 27280171 Downstream 97bp 16323 chr2 27280267 27280267 1 + G T LUAD 27280268 + 27280248 27280288 41 CCAGCCCCCCTCCCCCGCCGGCTTTCCCCTCCAGATACACT CCAGCCCCCCTCCCCCGCCTGCTTTCCCCTCCAGATACACT < 41bp 0.437305610309315 0.775836901914622 NA NA prediction 0.551673803829244 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27280268 chr2:27280267 synonymous SNV . 0 20 hm7G_associated_SNPs_17209 0 0 1 0 2 AGBL5 chr2:27280306 5'GT 27280306 Upstream 40bp 16324 chr7 12692305 12692305 1 + G T UCEC 12692306 + 12692286 12692326 41 TGAGCCACCCACATTCACAGGCTGGTTCCTGGGCTGGGATT TGAGCCACCCACATTCACATGCTGGTTCCTGGGCTGGGATT < 41bp 0.550961528080763 0.826794450701196 NA NA prediction 0.551665845240866 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12692306 chr7:12692305 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17211 0 0 1 0 1 SCIN chr7:12692213 3'AG 12692213 Downstream 93bp 16325 chr18 59206373 59206373 1 + G T LUAD 59206374 + 59206354 59206394 41 CTGTGAGAACGCCAAGGCAGGACAGGTAAGGTGGCCTGTGG CTGTGAGAACGCCAAGGCATGACAGGTAAGGTGGCCTGTGG < 41bp 0.561232338076814 0.837056981251767 NA NA prediction 0.551649286349905 Functional Gain - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59206374 chr18:59206373 stopgain 0.868 1 20 hm7G_associated_SNPs_17212 0 0 0 0 1 CDH20 chr18:59206378 5'GT 59206378 Upstream 6bp 16326 chr8 24188830 24188830 1 + G T LUAD 24188831 + 24188811 24188851 41 GGAGAGGACTGTGATTGTGGGACATCTGAGGTATGGCCAAT GGAGAGGACTGTGATTGTGTGACATCTGAGGTATGGCCAAT < 41bp 0.468069373919898 0.775824170792784 NA NA prediction 0.551648341585569 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24188831 chr8:24188830 nonsynonymous SNV 0.691 3 20 hm7G_associated_SNPs_17213 0 0 0 0 1 ADAM28 chr8:24188840 5'GT 24188840 Upstream 11bp 16327 chr9 139974517 139974517 1 + G T GBM 139974518 + 139974498 139974538 41 TCCCGTATGTGGATGAGGAGGGGAATCTGGTAAAGCCGCTA TCCCGTATGTGGATGAGGATGGGAATCTGGTAAAGCCGCTA < 41bp 0.586440985606182 0.862250383834552 NA NA prediction 0.551618796456739 Functional Gain - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139974518 chr9:139974517 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_17215 0 0 0 0 2 UAP1L1 chr9:139974454 3'AG 139974454 Downstream 64bp 16328 chr9 139974517 139974517 1 + G T GBM 139974518 + 139974498 139974538 41 TCCCGTATGTGGATGAGGAGGGGAATCTGGTAAAGCCGCTA TCCCGTATGTGGATGAGGATGGGAATCTGGTAAAGCCGCTA < 41bp 0.586440985606182 0.862250383834552 NA NA prediction 0.551618796456739 Functional Gain - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139974518 chr9:139974517 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_17215 0 0 0 0 2 UAP1L1 chr9:139974594 5'GT 139974594 Upstream 78bp 16329 chr14 45542576 45542576 1 + G T LUSC 45542577 + 45542557 45542597 41 TGTTTTATGGCATCTCTTAGGAAATATGACAAATAGTGGCT TGTTTTATGGCATCTCTTATGAAATATGACAAATAGTGGCT < 41bp 0.476900212878491 0.77580684483764 NA NA prediction 0.55161368967528 Functional Gain - TOGARAM1 ENSG00000198718 CDS Human protein_coding chr14:45542577 chr14:45542576 stopgain 1.000 1 20 hm7G_associated_SNPs_17217 0 0 1 0 1 TOGARAM1 chr14:45542499 3'AG 45542499 Downstream 78bp 16330 chr6 36454701 36454701 1 + G T STAD 36454702 + 36454682 36454722 41 AATTAAGAGAAGGCCTGGCGGCCGGTCTGAAGTCATCTATA AATTAAGAGAAGGCCTGGCTGCCGGTCTGAAGTCATCTATA < 41bp 0.531142283803555 0.806940444430216 NA NA prediction 0.551596321253321 Functional Gain - KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36454702 chr6:36454701 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_17218 0 0 1 0 1 KCTD20 chr6:36454660 3'AG 36454660 Downstream 42bp 16331 chr14 58771715 58771715 1 + G T THCA 58771716 + 58771696 58771736 41 TACAAGATGACCAAGTAAAGGGTCCTTTAAGAGTATGTATG TACAAGATGACCAAGTAAATGGTCCTTTAAGAGTATGTATG < 41bp 0.468610373131351 0.775770436235716 NA NA prediction 0.551540872471433 Functional Gain - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58771716 chr14:58771715 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17221 0 0 1 0 1 ARID4A chr14:58771662 3'AG 58771662 Downstream 54bp 16332 chr17 42849175 42849175 1 + G T LUAD 42849176 + 42849156 42849196 41 TCGTGGAGCCCCAAGAGGTGGCTGGACCTTGGGGAGCCCCT TCGTGGAGCCCCAAGAGGTTGCTGGACCTTGGGGAGCCCCT < 41bp 0.594105682029668 0.869867315053341 NA NA prediction 0.551523266047346 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42849176 chr17:42849175 synonymous SNV . 0 20 hm7G_associated_SNPs_17222 0 0 0 0 2 ADAM11 chr17:42849124 3'AG 42849124 Downstream 52bp 16333 chr17 42849175 42849175 1 + G T LUAD 42849176 + 42849156 42849196 41 TCGTGGAGCCCCAAGAGGTGGCTGGACCTTGGGGAGCCCCT TCGTGGAGCCCCAAGAGGTTGCTGGACCTTGGGGAGCCCCT < 41bp 0.594105682029668 0.869867315053341 NA NA prediction 0.551523266047346 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42849176 chr17:42849175 synonymous SNV . 0 20 hm7G_associated_SNPs_17222 0 0 0 0 2 ADAM11 chr17:42849199 5'GT 42849199 Upstream 25bp 16334 chr5 61654118 61654118 1 + G T LIHC 61654119 + 61654099 61654139 41 ACTCAGCTCCTAATGAAATGGTTTACAGGTAGGTAAATTCA ACTCAGCTCCTAATGAAATTGTTTACAGGTAGGTAAATTCA < 41bp 0.539999129185036 0.815735701234123 NA NA prediction 0.551473144098173 Functional Gain - KIF2A ENSG00000068796 CDS Human protein_coding chr5:61654119 chr5:61654118 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17223 0 0 1 0 1 KIF2A chr5:61654126 5'GT 61654126 Upstream 9bp 16335 chr1 13933760 13933760 1 + G T UCEC 13933761 + 13933741 13933781 41 AGATGATGTGGTGACTCCAGGAACCAGCGAAGACCGCTATA AGATGATGTGGTGACTCCATGAACCAGCGAAGACCGCTATA < 41bp 0.571059444070207 0.846790779503382 NA NA prediction 0.551462670866349 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933761 chr1:13933760 stopgain 0.002 0 20 hm7G_associated_SNPs_17224 0 0 0 0 2 PDPN chr1:13933668 3'AG 13933668 Downstream 93bp 16336 chr1 13933760 13933760 1 + G T UCEC 13933761 + 13933741 13933781 41 AGATGATGTGGTGACTCCAGGAACCAGCGAAGACCGCTATA AGATGATGTGGTGACTCCATGAACCAGCGAAGACCGCTATA < 41bp 0.571059444070207 0.846790779503382 NA NA prediction 0.551462670866349 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933761 chr1:13933760 stopgain 0.002 0 20 hm7G_associated_SNPs_17224 0 0 0 0 2 PDPN chr1:13933801 5'GT 13933801 Upstream 42bp 16337 chrX 10109498 10109498 1 + G T LUSC 10109499 + 10109479 10109519 41 AAGATAGCATTCTTCACAAGGCCAAGGATCAACATACCTCC AAGATAGCATTCTTCACAATGCCAAGGATCAACATACCTCC < 41bp 0.463611340823799 0.775731138515433 NA NA prediction 0.551462277030867 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10109499 chrX:10109498 nonsynonymous SNV 0.920 3 20 hm7G_associated_SNPs_17225 0 0 0 0 1 WWC3 chrX:10109475 3'AG 10109475 Downstream 24bp 16338 chr7 150558107 150558107 1 + G T LUAD 150558108 + 150558088 150558128 41 CCCAACACAGCCACACCTGGGAACTCCGTGGGCTTCCTGCT CCCAACACAGCCACACCTGTGAACTCCGTGGGCTTCCTGCT < 41bp 0.573043026239593 0.848770510500964 NA NA prediction 0.551454968522743 Functional Gain - AOC1 ENSG00000002726 CDS Human protein_coding chr7:150558108 chr7:150558107 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_17226 0 0 0 0 1 AOC1 chr7:150558031 3'AG 150558031 Downstream 77bp 16339 chr14 24524815 24524815 1 + G T HNSC 24524816 + 24524796 24524836 41 TCACCAAACTCTACTGCAAGGACTTGCGGCTGGTAGGAACT TCACCAAACTCTACTGCAATGACTTGCGGCTGGTAGGAACT < 41bp 0.442889607890506 0.775707421244211 NA NA prediction 0.551414842488421 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24524816 chr14:24524815 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_17231 0 0 1 0 2 CARMIL3 chr14:24524752 3'AG 24524752 Downstream 64bp 16340 chr14 24524815 24524815 1 + G T HNSC 24524816 + 24524796 24524836 41 TCACCAAACTCTACTGCAAGGACTTGCGGCTGGTAGGAACT TCACCAAACTCTACTGCAATGACTTGCGGCTGGTAGGAACT < 41bp 0.442889607890506 0.775707421244211 NA NA prediction 0.551414842488421 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24524816 chr14:24524815 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_17231 0 0 1 0 2 CARMIL3 chr14:24524827 5'GT 24524827 Upstream 13bp 16341 chr3 50324552 50324552 1 + G T UCEC 50324553 + 50324533 50324573 41 ACACGCTCCGCACGCAGGAGGAGACACTACTCAAACTCCGC ACACGCTCCGCACGCAGGATGAGACACTACTCAAACTCCGC < 41bp 0.563676449338698 0.83935994380029 NA NA prediction 0.551366988923184 Functional Gain - LSMEM2 ENSG00000179564 CDS Human protein_coding chr3:50324553 chr3:50324552 nonsynonymous SNV 0.697 3 20 hm7G_associated_SNPs_17233 0 0 0 0 1 LSMEM2 chr3:50324500 3'AG 50324500 Downstream 53bp 16342 chr15 101432774 101432774 1 + G T LUAD 101432775 + 101432755 101432795 41 CTTTTTTCATCGACCTGGAGGGCTGTATTAGAACCCTCAGA CTTTTTTCATCGACCTGGATGGCTGTATTAGAACCCTCAGA < 41bp 0.446290126772832 0.775682613690376 NA NA prediction 0.551365227380753 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432775 chr15:101432774 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_17234 0 0 0 0 2 ALDH1A3 chr15:101432715 3'AG 101432715 Downstream 60bp 16343 chr15 101432774 101432774 1 + G T LUAD 101432775 + 101432755 101432795 41 CTTTTTTCATCGACCTGGAGGGCTGTATTAGAACCCTCAGA CTTTTTTCATCGACCTGGATGGCTGTATTAGAACCCTCAGA < 41bp 0.446290126772832 0.775682613690376 NA NA prediction 0.551365227380753 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432775 chr15:101432774 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_17234 0 0 0 0 2 ALDH1A3 chr15:101432844 5'GT 101432844 Upstream 71bp 16344 chrX 14599492 14599492 1 + G T LUAD 14599493 + 14599473 14599513 41 ACTGACAACAAATTGCTACGGATTTCGAAAAATGGCAAAGT ACTGACAACAAATTGCTACTGATTTCGAAAAATGGCAAAGT < 41bp 0.56362463443593 0.839305724676015 NA NA prediction 0.551362180480169 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14599493 chrX:14599492 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_17235 0 0 0 0 1 GLRA2 chrX:14599528 5'GT 14599528 Upstream 37bp 16345 chr13 37012870 37012870 1 + G T COAD 37012871 + 37012851 37012891 41 TGGTGGACTGGCTGGTGGAGGTTGGGGAAGAATATAAACTT TGGTGGACTGGCTGGTGGATGTTGGGGAAGAATATAAACTT < 41bp 0.466943802854664 0.775654569112896 NA NA prediction 0.551309138225792 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37012871 chr13:37012870 nonsynonymous SNV 0.786 2 20 hm7G_associated_SNPs_17239 0 0 0 0 1 CCNA1 chr13:37012781 3'AG 37012781 Downstream 90bp 16346 chr1 153750763 153750763 1 + G T LUSC 153750764 + 153750744 153750784 41 GACATATGGACTGACAGAGGGCAACGTGGCCACCATCAACT GACATATGGACTGACAGAGTGCAACGTGGCCACCATCAACT < 41bp 0.582767743179448 0.858412262392925 NA NA prediction 0.551289038426954 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750764 chr1:153750763 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_17240 0 0 0 0 1 SLC27A3 chr1:153750831 5'GT 153750831 Upstream 69bp 16347 chr10 30736811 30736811 1 + G T UCEC 30736812 + 30736792 30736832 41 GGTTCTGATTTTATTCCTCGGGGCGCCTTTGGAAAGGTATA GGTTCTGATTTTATTCCTCTGGGCGCCTTTGGAAAGGTATA < 41bp 0.452641312432445 0.775633976361654 NA NA prediction 0.551267952723308 Functional Gain - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30736812 chr10:30736811 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17244 0 0 1 0 1 MAP3K8 chr10:30736878 5'GT 30736878 Upstream 68bp 16348 chr11 22364827 22364827 1 + G T UCEC 22364828 + 22364808 22364848 41 TGGGACCCGGAAACCGTGGGGATGATCCACGGTTCCTTCTT TGGGACCCGGAAACCGTGGTGATGATCCACGGTTCCTTCTT < 41bp 0.456620001216079 0.775589485790737 NA NA prediction 0.551178971581474 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22364828 chr11:22364827 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17247 0 0 0 0 2 SLC17A6 chr11:22364793 3'AG 22364793 Downstream 35bp 16349 chr11 22364827 22364827 1 + G T UCEC 22364828 + 22364808 22364848 41 TGGGACCCGGAAACCGTGGGGATGATCCACGGTTCCTTCTT TGGGACCCGGAAACCGTGGTGATGATCCACGGTTCCTTCTT < 41bp 0.456620001216079 0.775589485790737 NA NA prediction 0.551178971581474 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22364828 chr11:22364827 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17247 0 0 0 0 2 SLC17A6 chr11:22364911 5'GT 22364911 Upstream 85bp 16350 chr17 27005589 27005589 1 + G T STAD 27005590 + 27005570 27005610 41 TTATTGCCTTCTATCGAAAGGAGTATGTGGAGCCTGAGTTG TTATTGCCTTCTATCGAAATGAGTATGTGGAGCCTGAGTTG < 41bp 0.447433516245037 0.775539418856211 NA NA prediction 0.551078837712421 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27005590 chr17:27005589 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17255 0 0 1 0 2 SUPT6H chr17:27005563 3'AG 27005563 Downstream 27bp 16351 chr17 27005589 27005589 1 + G T STAD 27005590 + 27005570 27005610 41 TTATTGCCTTCTATCGAAAGGAGTATGTGGAGCCTGAGTTG TTATTGCCTTCTATCGAAATGAGTATGTGGAGCCTGAGTTG < 41bp 0.447433516245037 0.775539418856211 NA NA prediction 0.551078837712421 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27005590 chr17:27005589 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17255 0 0 1 0 2 SUPT6H chr17:27005652 5'GT 27005652 Upstream 64bp 16352 chr7 75513130 75513130 1 + G T UCEC 75513131 + 75513111 75513151 41 GTGTTCAAGTACGTCTCAGGGTCTTCAGCCGAGAGGAGGGC GTGTTCAAGTACGTCTCAGTGTCTTCAGCCGAGAGGAGGGC < 41bp 0.584028777590249 0.859567147232437 NA NA prediction 0.551076739284376 Functional Gain - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75513131 chr7:75513130 nonsynonymous SNV 0.598 3 20 hm7G_associated_SNPs_17256 0 0 1 0 1 RHBDD2 chr7:75513166 5'GT 75513166 Upstream 37bp 16353 chr19 17611618 17611618 1 + G T KIRC 17611619 + 17611599 17611639 41 AGAACGTCTCCACCACCGAGGTGGAGGGCGTGCTGAGCCGC AGAACGTCTCCACCACCGATGTGGAGGGCGTGCTGAGCCGC < 41bp 0.43817538753386 0.775529607764093 NA NA prediction 0.551059215528187 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17611619 chr19:17611618 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_17258 0 0 0 0 1 SLC27A1 chr19:17611521 3'AG 17611521 Downstream 98bp 16354 chr3 52538065 52538065 1 + G T PAAD 52538066 + 52538046 52538086 41 GTGTGTGCAGGGAAAGCGAGGTGGGGGATGGGCGTGCCTGC GTGTGTGCAGGGAAAGCGATGTGGGGGATGGGCGTGCCTGC < 41bp 0.459481425156448 0.775521410155381 NA NA prediction 0.551042820310761 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52538066 chr3:52538065 nonsynonymous SNV 0.543 2 20 hm7G_associated_SNPs_17260 0 0 0 0 1 STAB1 chr3:52538044 3'AG 52538044 Downstream 22bp 16355 chr1 223940636 223940636 1 + G T LUAD 223940637 + 223940617 223940657 41 GGAGGCGGGGCTCCACCGCGGGAGGTTGCAGGAACTACCCG GGAGGCGGGGCTCCACCGCTGGAGGTTGCAGGAACTACCCG < 41bp 0.4589993165156 0.77551887388953 NA NA prediction 0.55103774777906 Functional Gain - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223940637 chr1:223940636 synonymous SNV . 0 20 hm7G_associated_SNPs_17261 0 0 1 0 1 CAPN2 chr1:223940658 5'GT 223940658 Upstream 23bp 16356 chr17 26687567 26687567 1 + G T SARC 26687568 + 26687548 26687588 41 CCAGGATACAAGACATGGTGGGACTCTCAGCGACCTGGGAA CCAGGATACAAGACATGGTTGGACTCTCAGCGACCTGGGAA < 41bp 0.586821445161603 0.862332204663744 NA NA prediction 0.551021519004282 Functional Gain - TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26687568 chr17:26687567 nonsynonymous SNV 0.660 4 20 hm7G_associated_SNPs_17264 0 0 1 0 2 TMEM199 chr17:26687552 3'AG 26687552 Downstream 16bp 16357 chr17 26687567 26687567 1 + G T SARC 26687568 + 26687548 26687588 41 CCAGGATACAAGACATGGTGGGACTCTCAGCGACCTGGGAA CCAGGATACAAGACATGGTTGGACTCTCAGCGACCTGGGAA < 41bp 0.586821445161603 0.862332204663744 NA NA prediction 0.551021519004282 Functional Gain - TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26687568 chr17:26687567 nonsynonymous SNV 0.660 4 20 hm7G_associated_SNPs_17264 0 0 1 0 2 TMEM199 chr17:26687594 5'GT 26687594 Upstream 28bp 16358 chr6 109225488 109225488 1 + G T UCEC 109225489 + 109225469 109225509 41 AACTTCATCATGCTTTAGAGGAAGGAAACATGCTTGGAAAT AACTTCATCATGCTTTAGATGAAGGAAACATGCTTGGAAAT < 41bp 0.546154751028498 0.821662236354108 NA NA prediction 0.55101497065122 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109225489 chr6:109225488 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17266 0 0 0 0 1 ARMC2 chr6:109225433 3'AG 109225433 Downstream 56bp 16359 chr1 2421302 2421302 1 + G T UCEC 2421303 + 2421283 2421323 41 GACTGCAAGCTCCTCAATGGGGATGTGAGTCGGGCTGGAGG GACTGCAAGCTCCTCAATGTGGATGTGAGTCGGGCTGGAGG < 41bp 0.45022173080927 0.775500545645492 NA NA prediction 0.551001091290983 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421303 chr1:2421302 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_17268 0 0 0 0 1 PLCH2 chr1:2421306 5'GT 2421306 Upstream 5bp 16360 chr7 44739789 44739789 1 + G T SKCM 44739790 + 44739770 44739810 41 CAGCTATATGACTGCAATTGGGTTGTTGTCAACTGCTCCAC CAGCTATATGACTGCAATTTGGTTGTTGTCAACTGCTCCAC < 41bp 0.435646504537082 0.77549902021143 NA NA prediction 0.550998040422859 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44739790 chr7:44739789 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_17269 0 0 0 0 2 OGDH chr7:44739740 3'AG 44739740 Downstream 50bp 16361 chr7 44739789 44739789 1 + G T SKCM 44739790 + 44739770 44739810 41 CAGCTATATGACTGCAATTGGGTTGTTGTCAACTGCTCCAC CAGCTATATGACTGCAATTTGGTTGTTGTCAACTGCTCCAC < 41bp 0.435646504537082 0.77549902021143 NA NA prediction 0.550998040422859 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44739790 chr7:44739789 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_17269 0 0 0 0 2 OGDH chr7:44739868 5'GT 44739868 Upstream 80bp 16362 chr17 40935987 40935987 1 + G T UCEC 40935988 + 40935968 40936008 41 TTCCGGGAGATGAAGCCGCGGGTCCTTCAGCGCTGGAGCCG TTCCGGGAGATGAAGCCGCTGGTCCTTCAGCGCTGGAGCCG < 41bp 0.596498978067378 0.871997596778433 NA NA prediction 0.550997237422109 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40935988 chr17:40935987 nonsynonymous SNV 0.945 2 20 hm7G_associated_SNPs_17270 0 0 1 0 1 WNK4 chr17:40935955 3'AG 40935955 Downstream 33bp 16363 chr12 102559544 102559544 1 + G T LUSC 102559545 + 102559525 102559565 41 AGAACAATAGAGCTTGGAGGGAAAGGATATGCACCACCACC AGAACAATAGAGCTTGGAGTGAAAGGATATGCACCACCACC < 41bp 0.472407532609857 0.77548047272389 NA NA prediction 0.55096094544778 Functional Gain - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102559545 chr12:102559544 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17271 0 0 1 0 1 PARPBP chr12:102559507 3'AG 102559507 Downstream 38bp 16364 chr16 538888 538888 1 + G T UCEC 538889 + 538869 538909 41 GTCTGTCATCACGGTGATCGGGGGCGAGGAGCACTTTGAGG GTCTGTCATCACGGTGATCTGGGGCGAGGAGCACTTTGAGG < 41bp 0.588904127154793 0.864378158746281 NA NA prediction 0.550948063182976 Functional Gain - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:538889 chr16:538888 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_17272 0 0 1 0 1 RAB11FIP3 chr16:538851 3'AG 538851 Downstream 38bp 16365 chr5 76342186 76342186 1 + G T UCEC 76342187 + 76342167 76342207 41 TCCAGGATTTGAACTCAGAGGATCAAAAAGCCTTCAGTGTT TCCAGGATTTGAACTCAGATGATCAAAAAGCCTTCAGTGTT < 41bp 0.559442679778101 0.834910048721528 NA NA prediction 0.550934737886853 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76342187 chr5:76342186 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_17273 0 0 1 0 1 AGGF1 chr5:76342172 3'AG 76342172 Downstream 15bp 16366 chr7 148454213 148454213 1 + G T UCEC 148454214 + 148454194 148454234 41 TCGCCGTGAATGTGACGAAGGACGAAAAGGAATATATGAAA TCGCCGTGAATGTGACGAATGACGAAAAGGAATATATGAAA < 41bp 0.562864072492637 0.838324486574155 NA NA prediction 0.550920828163036 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148454214 chr7:148454213 stopgain 0.998 1 20 hm7G_associated_SNPs_17275 0 0 1 0 1 CUL1 chr7:148454242 5'GT 148454242 Upstream 30bp 16367 chr9 15874627 15874627 1 + G T UCEC 15874628 + 15874608 15874648 41 GAGACCTTTGCAATGGAGGGGCTCAAGGGCGGGCCAGAGGT GAGACCTTTGCAATGGAGGTGCTCAAGGGCGGGCCAGAGGT < 41bp 0.551767626492637 0.827207178235183 NA NA prediction 0.550879103485091 Functional Gain - CCDC171 ENSG00000164989 CDS Human protein_coding chr9:15874628 chr9:15874627 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17278 0 0 1 0 2 CCDC171 chr9:15874530 3'AG 15874530 Downstream 98bp 16368 chr9 15874627 15874627 1 + G T UCEC 15874628 + 15874608 15874648 41 GAGACCTTTGCAATGGAGGGGCTCAAGGGCGGGCCAGAGGT GAGACCTTTGCAATGGAGGTGCTCAAGGGCGGGCCAGAGGT < 41bp 0.551767626492637 0.827207178235183 NA NA prediction 0.550879103485091 Functional Gain - CCDC171 ENSG00000164989 CDS Human protein_coding chr9:15874628 chr9:15874627 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17278 0 0 1 0 2 CCDC171 chr9:15874661 5'GT 15874661 Upstream 35bp 16369 chr7 111846853 111846853 1 + G T UCEC 111846854 + 111846834 111846874 41 CAGCACAGTCGGGGGTGTAGGTTATGGGGGTGAGTACGGTG CAGCACAGTCGGGGGTGTATGTTATGGGGGTGAGTACGGTG < 41bp 0.479705983929618 0.775402592720263 NA NA prediction 0.550805185440526 Functional Gain - ZNF277 ENSG00000198839 CDS Human protein_coding chr7:111846854 chr7:111846853 nonsynonymous SNV 0.024 1 20 hm7G_associated_SNPs_17281 0 0 0 0 1 ZNF277 chr7:111846862 5'GT 111846862 Upstream 10bp 16370 chr11 113268024 113268024 1 + G T STAD 113268025 + 113268005 113268045 41 GAGAGCAAGGCCCTGGCCAGGAAGGTGTCCTGCAAGCTGTC GAGAGCAAGGCCCTGGCCATGAAGGTGTCCTGCAAGCTGTC < 41bp 0.439047854233294 0.775399318568144 NA NA prediction 0.550798637136289 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113268025 chr11:113268024 nonsynonymous SNV 0.296 1 20 hm7G_associated_SNPs_17282 0 0 0 0 2 ANKK1 chr11:113267946 3'AG 113267946 Downstream 79bp 16371 chr11 113268024 113268024 1 + G T STAD 113268025 + 113268005 113268045 41 GAGAGCAAGGCCCTGGCCAGGAAGGTGTCCTGCAAGCTGTC GAGAGCAAGGCCCTGGCCATGAAGGTGTCCTGCAAGCTGTC < 41bp 0.439047854233294 0.775399318568144 NA NA prediction 0.550798637136289 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113268025 chr11:113268024 nonsynonymous SNV 0.296 1 20 hm7G_associated_SNPs_17282 0 0 0 0 2 ANKK1 chr11:113268064 5'GT 113268064 Upstream 41bp 16372 chr3 197687228 197687228 1 + G T OV 197687229 + 197687209 197687249 41 CGTTTTACTCCTGTTGGGCGGGCTCCGGGCCAGCGCCACAT CGTTTTACTCCTGTTGGGCTGGCTCCGGGCCAGCGCCACAT < 41bp 0.570770091050299 0.846160486139548 NA NA prediction 0.550780790178499 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197687229 chr3:197687228 nonsynonymous SNV 0.694 1 20 hm7G_associated_SNPs_17285 0 0 0 0 1 LMLN chr3:197687311 5'GT 197687311 Upstream 84bp 16373 chr7 99798736 99798736 1 + G T UCEC 99798737 + 99798717 99798757 41 CCTTCCTAGATGAGGATGAGGTATATAATCTGGCAGCCACT CCTTCCTAGATGAGGATGATGTATATAATCTGGCAGCCACT < 41bp 0.454515383327563 0.7753819587818 NA NA prediction 0.5507639175636 Functional Gain - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99798737 chr7:99798736 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_17286 0 0 0 0 2 STAG3 chr7:99798713 3'AG 99798713 Downstream 24bp 16374 chr7 99798736 99798736 1 + G T UCEC 99798737 + 99798717 99798757 41 CCTTCCTAGATGAGGATGAGGTATATAATCTGGCAGCCACT CCTTCCTAGATGAGGATGATGTATATAATCTGGCAGCCACT < 41bp 0.454515383327563 0.7753819587818 NA NA prediction 0.5507639175636 Functional Gain - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99798737 chr7:99798736 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_17286 0 0 0 0 2 STAG3 chr7:99798783 5'GT 99798783 Upstream 48bp 16375 chr17 29196652 29196652 1 + G T PAAD 29196653 + 29196633 29196673 41 TTTTAATAGCTACTACATAGGCAAGTCACCAAGTAAGTAAA TTTTAATAGCTACTACATATGCAAGTCACCAAGTAAGTAAA < 41bp 0.476074697525611 0.775372068813643 NA NA prediction 0.550744137627287 Functional Gain - ATAD5 ENSG00000176208 CDS Human protein_coding chr17:29196653 chr17:29196652 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_17289 0 0 1 0 1 ATAD5 chr17:29196664 5'GT 29196664 Upstream 13bp 16376 chr8 68049826 68049826 1 + G T UCEC 68049827 + 68049807 68049847 41 TCCTCTCAGGGATGCAAAAGGAAATCTGATAAGTACGTTAT TCCTCTCAGGGATGCAAAATGAAATCTGATAAGTACGTTAT < 41bp 0.465967275725397 0.775369616279112 NA NA prediction 0.550739232558224 Functional Gain - CSPP1 ENSG00000104218 CDS Human protein_coding chr8:68049827 chr8:68049826 stopgain 1.000 1 20 hm7G_associated_SNPs_17290 0 0 1 1 1 CSPP1 chr8:68049838 5'GT 68049838 Upstream 13bp 16377 chr6 160557593 160557593 1 + G T UCEC 160557594 + 160557574 160557614 41 AGATGCTTTCCCTCGAAGAGGATGTCACCGAAAAGCTGAGC AGATGCTTTCCCTCGAAGATGATGTCACCGAAAAGCTGAGC < 41bp 0.582254589832827 0.857622916482386 NA NA prediction 0.550736653299118 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557594 chr6:160557593 nonsynonymous SNV 0.034 0 20 hm7G_associated_SNPs_17291 0 0 0 0 2 SLC22A1 chr6:160557576 3'AG 160557576 Downstream 18bp 16378 chr6 160557593 160557593 1 + G T UCEC 160557594 + 160557574 160557614 41 AGATGCTTTCCCTCGAAGAGGATGTCACCGAAAAGCTGAGC AGATGCTTTCCCTCGAAGATGATGTCACCGAAAAGCTGAGC < 41bp 0.582254589832827 0.857622916482386 NA NA prediction 0.550736653299118 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557594 chr6:160557593 nonsynonymous SNV 0.034 0 20 hm7G_associated_SNPs_17291 0 0 0 0 2 SLC22A1 chr6:160557682 5'GT 160557682 Upstream 90bp 16379 chr4 25256816 25256816 1 + G T OV 25256817 + 25256797 25256837 41 CTGCCTGATTCCTAATCAGGGGTACCTTTCCGAAGCGGGTG CTGCCTGATTCCTAATCAGTGGTACCTTTCCGAAGCGGGTG < 41bp 0.578667871996754 0.854029536233482 NA NA prediction 0.550723328473457 Functional Gain - PI4K2B ENSG00000038210 CDS Human protein_coding chr4:25256817 chr4:25256816 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_17292 0 0 0 0 1 PI4K2B chr4:25256887 5'GT 25256887 Upstream 72bp 16380 chr22 41791798 41791798 1 + G T GBM 41791799 + 41791779 41791819 41 AACAACGTGGCAGCTAAACGGTCACGGGATGCCCGGCGCCT AACAACGTGGCAGCTAAACTGTCACGGGATGCCCGGCGCCT < 41bp 0.553843747163666 0.829191666510188 NA NA prediction 0.550695838693045 Functional Gain - TEF ENSG00000167074 CDS Human protein_coding chr22:41791799 chr22:41791798 nonsynonymous SNV 0.405 4 20 hm7G_associated_SNPs_17293 0 0 0 0 1 TEF chr22:41791749 3'AG 41791749 Downstream 50bp 16381 chr1 86046687 86046687 1 + G T UCEC 86046688 + 86046668 86046708 41 ATGAGCTCCCGCATCGCCAGGGCGCTCGCCTTAGTCGTCAC ATGAGCTCCCGCATCGCCATGGCGCTCGCCTTAGTCGTCAC < 41bp 0.560868953447885 0.836212156089738 NA NA prediction 0.550686405283707 Functional Gain - CYR61 ENSG00000142871 CDS Human protein_coding chr1:86046688 chr1:86046687 nonsynonymous SNV 0.075 1 20 hm7G_associated_SNPs_17295 0 0 0 0 1 CYR61 chr1:86046730 5'GT 86046730 Upstream 44bp 16382 chr12 120972711 120972711 1 + G T HNSC 120972712 + 120972692 120972732 41 CTCTTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCG CTCTTCGGGCAGCAGCAAATGGCAACAGCCGCCCCGCTCCG < 41bp 0.454534815247878 0.775342554895351 NA NA prediction 0.550685109790702 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:120972712 chr12:120972711 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17296 0 0 0 0 1 RNF10 chr12:120972771 5'GT 120972771 Upstream 61bp 16383 chr1 171763642 171763642 1 + G T UCEC 171763643 + 171763623 171763663 41 AGCAATCTTTTCTACAGAAGGTTAAAAGCATCTTGACTCCT AGCAATCTTTTCTACAGAATGTTAAAAGCATCTTGACTCCT < 41bp 0.554805222793293 0.830123442312231 NA NA prediction 0.550636439037875 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171763643 chr1:171763642 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_17298 0 0 1 0 1 METTL13 chr1:171763667 5'GT 171763667 Upstream 26bp 16384 chr21 43524108 43524108 1 - C A UCEC 43524107 - 43524087 43524127 41 CAGCGTGGAGATGCCCATGGGAAACCCGGGGTCCTGCACGG CAGCGTGGAGATGCCCATGTGAAACCCGGGGTCCTGCACGG < 41bp 0.564765269706291 0.840058466551734 NA NA prediction 0.550586393690885 Functional Gain - UMODL1 ENSG00000177398;ENSG00000184385 CDS Human other chr21:43524107 chr21:43524108 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_17302 0 0 0 0 1 UMODL1 chr21:43524145 3'AG 43524145 Downstream 38bp 16385 chr12 130840201 130840201 1 + G T LUSC 130840202 + 130840182 130840222 41 AACAGAAAAGATTCACCAAGGTGGAAAAACAGTAAGGCAGT AACAGAAAAGATTCACCAATGTGGAAAAACAGTAAGGCAGT < 41bp 0.544454006328398 0.819735595269839 NA NA prediction 0.550563177882882 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130840202 chr12:130840201 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17304 0 0 0 0 1 PIWIL1 chr12:130840212 5'GT 130840212 Upstream 12bp 16386 chr15 25222137 25222137 1 + G T UCEC 25222138 + 25222118 25222158 41 CCCAGGCCCCTGCTGGATTGGCAGGCCCTGTCCGAGGAGTT CCCAGGCCCCTGCTGGATTTGCAGGCCCTGTCCGAGGAGTT < 41bp 0.440114112933847 0.775278887672883 NA NA prediction 0.550557775345765 Functional Gain - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222138 chr15:25222137 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_17305 0 0 1 0 1 SNRPN chr15:25222176 5'GT 25222176 Upstream 40bp 16387 chr19 17881380 17881380 1 + G T STAD 17881381 + 17881361 17881401 41 GTACCAGCCAGAAGGAGATGGACAAGGTGGGCTCACAGTGG GTACCAGCCAGAAGGAGATTGACAAGGTGGGCTCACAGTGG < 41bp 0.442570263270526 0.775254577226479 NA NA prediction 0.550509154452959 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17881381 chr19:17881380 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_17306 0 0 0 0 1 FCHO1 chr19:17881386 5'GT 17881386 Upstream 7bp 16388 chr11 134238606 134238606 1 + G T UCEC 134238607 + 134238587 134238627 41 CCTCTACATGTTCCACGGAGGCACCAACTTTGGCTTCATGA CCTCTACATGTTCCACGGATGCACCAACTTTGGCTTCATGA < 41bp 0.443601592371665 0.775247226618206 NA NA prediction 0.550494453236412 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134238607 chr11:134238606 nonsynonymous SNV 0.990 5 20 hm7G_associated_SNPs_17307 0 0 1 0 1 GLB1L2 chr11:134238538 3'AG 134238538 Downstream 69bp 16389 chr19 18856697 18856697 1 + G T STAD 18856698 + 18856678 18856718 41 CACCATGGGCTGGTGGACAGGGTGTACCGGGAGCGTGGCCG CACCATGGGCTGGTGGACATGGTGTACCGGGAGCGTGGCCG < 41bp 0.590368964805331 0.865587853742344 NA NA prediction 0.550437777874027 Functional Gain - CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18856698 chr19:18856697 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_17308 0 0 0 0 1 CRTC1 chr19:18856633 3'AG 18856633 Downstream 65bp 16390 chr11 44931317 44931317 1 + G T LUSC 44931318 + 44931298 44931338 41 GTGGACCCCACCGGCTTCCGGGAGATCGTGGCTGCCAATCC GTGGACCCCACCGGCTTCCTGGAGATCGTGGCTGCCAATCC < 41bp 0.586766624171151 0.861980948236293 NA NA prediction 0.550428648130283 Functional Gain - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44931318 chr11:44931317 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17309 0 0 0 0 1 TSPAN18 chr11:44931256 3'AG 44931256 Downstream 62bp 16391 chr10 103988197 103988197 1 + G T LIHC 103988198 + 103988178 103988218 41 CTGGGGGCAGTGAGGATGTGGGGCATTATGGGGACTGTGCT CTGGGGGCAGTGAGGATGTTGGGCATTATGGGGACTGTGCT < 41bp 0.577771357852821 0.852982808614194 NA NA prediction 0.550422901522746 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103988198 chr10:103988197 nonsynonymous SNV 0.010 0 20 hm7G_associated_SNPs_17310 0 0 0 0 1 ELOVL3 chr10:103988174 3'AG 103988174 Downstream 24bp 16392 chr17 54431369 54431369 1 + G T UCEC 54431370 + 54431350 54431390 41 AACAATGTGCCCATTGCAAGGATTCTTCTGAGGACAGGGGC AACAATGTGCCCATTGCAATGATTCTTCTGAGGACAGGGGC < 41bp 0.462646907326961 0.775203980240068 NA NA prediction 0.550407960480136 Functional Gain - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54431370 chr17:54431369 nonsynonymous SNV 0.822 3 20 hm7G_associated_SNPs_17311 0 0 0 0 1 ANKFN1 chr17:54431407 5'GT 54431407 Upstream 39bp 16393 chr9 131289510 131289510 1 + G T UCEC 131289511 + 131289491 131289531 41 AGTGGTACCAGCAGCTGCAGGATGCTTCCATGCAGTGTGTG AGTGGTACCAGCAGCTGCATGATGCTTCCATGCAGTGTGTG < 41bp 0.580666824625302 0.855867989054516 NA NA prediction 0.550402328858428 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131289511 chr9:131289510 nonsynonymous SNV 0.957 4 20 hm7G_associated_SNPs_17312 0 0 1 0 2 GLE1 chr9:131289458 3'AG 131289458 Downstream 53bp 16394 chr9 131289510 131289510 1 + G T UCEC 131289511 + 131289491 131289531 41 AGTGGTACCAGCAGCTGCAGGATGCTTCCATGCAGTGTGTG AGTGGTACCAGCAGCTGCATGATGCTTCCATGCAGTGTGTG < 41bp 0.580666824625302 0.855867989054516 NA NA prediction 0.550402328858428 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131289511 chr9:131289510 nonsynonymous SNV 0.957 4 20 hm7G_associated_SNPs_17312 0 0 1 0 2 GLE1 chr9:131289570 5'GT 131289570 Upstream 61bp 16395 chr12 56530533 56530533 1 + G T UCEC 56530534 + 56530514 56530554 41 TCCTGTGCCTGTAGGTGAAGGATGATTCCAGGGCCCTGACT TCCTGTGCCTGTAGGTGAATGATGATTCCAGGGCCCTGACT < 41bp 0.585608750862584 0.860806788970538 NA NA prediction 0.550396076215907 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56530534 chr12:56530533 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17313 0 0 1 0 1 ESYT1 chr12:56530528 3'AG 56530528 Downstream 6bp 16396 chr9 127230869 127230869 1 + G T UCEC 127230870 + 127230850 127230890 41 TCTCCTGGATGCTGGTGGAGGGGCTGCTGCTGTGGAGGAAG TCTCCTGGATGCTGGTGGATGGGCTGCTGCTGTGGAGGAAG < 41bp 0.588252796781209 0.863428448839886 NA NA prediction 0.550351304117355 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127230870 chr9:127230869 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_17315 0 0 0 0 1 PSMB7;NR5A1 chr9:127230951 5'GT 127230951 Upstream 83bp 16397 chr5 170149807 170149807 1 + G T LUSC 170149808 + 170149788 170149828 41 GTATGACATCAACAAGGACGGATACATAAACAAAGAGGTAA GTATGACATCAACAAGGACTGATACATAAACAAAGAGGTAA < 41bp 0.483115947246125 0.775170419068251 NA NA prediction 0.550340838136502 Functional Gain - KCNIP1 ENSG00000182132 CDS Human protein_coding chr5:170149808 chr5:170149807 stopgain 0.995 1 20 hm7G_associated_SNPs_17316 0 0 1 0 2 KCNIP1 chr5:170149717 3'AG 170149717 Downstream 91bp 16398 chr5 170149807 170149807 1 + G T LUSC 170149808 + 170149788 170149828 41 GTATGACATCAACAAGGACGGATACATAAACAAAGAGGTAA GTATGACATCAACAAGGACTGATACATAAACAAAGAGGTAA < 41bp 0.483115947246125 0.775170419068251 NA NA prediction 0.550340838136502 Functional Gain - KCNIP1 ENSG00000182132 CDS Human protein_coding chr5:170149808 chr5:170149807 stopgain 0.995 1 20 hm7G_associated_SNPs_17316 0 0 1 0 2 KCNIP1 chr5:170149824 5'GT 170149824 Upstream 18bp 16399 chr12 57989707 57989707 1 + G T UCEC 57989708 + 57989688 57989728 41 CCCCCCCAGCGAAAGTGAAGGCAGTGATGGTCGCTTCCTTA CCCCCCCAGCGAAAGTGAATGCAGTGATGGTCGCTTCCTTA < 41bp 0.584163256188 0.859328389359973 NA NA prediction 0.550330266343946 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57989708 chr12:57989707 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17318 0 0 0 0 1 PIP4K2C chr12:57989671 3'AG 57989671 Downstream 37bp 16400 chr11 66328219 66328219 1 + G T COAD 66328220 + 66328200 66328240 41 CAGGACATCAACACCAAGTGGGATATGGTCAGTGCCACCTG CAGGACATCAACACCAAGTTGGATATGGTCAGTGCCACCTG < 41bp 0.567755226823274 0.842909422498452 NA NA prediction 0.550308391350358 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66328220 chr11:66328219 unknown 0.902 2 20 hm7G_associated_SNPs_17322 0 0 0 0 1 ACTN3 chr11:66328226 5'GT 66328226 Upstream 8bp 16401 chr17 78022479 78022479 1 + G T LUAD 78022480 + 78022460 78022500 41 GCACCGAGGAGGGGGCCATGGCAGAGAGAGTGGAGTCCGAG GCACCGAGGAGGGGGCCATTGCAGAGAGAGTGGAGTCCGAG < 41bp 0.596843020427273 0.87196319018481 NA NA prediction 0.550240339515073 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022480 chr17:78022479 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_17325 0 0 1 0 2 CCDC40 chr17:78022382 3'AG 78022382 Downstream 98bp 16402 chr17 78022479 78022479 1 + G T LUAD 78022480 + 78022460 78022500 41 GCACCGAGGAGGGGGCCATGGCAGAGAGAGTGGAGTCCGAG GCACCGAGGAGGGGGCCATTGCAGAGAGAGTGGAGTCCGAG < 41bp 0.596843020427273 0.87196319018481 NA NA prediction 0.550240339515073 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78022480 chr17:78022479 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_17325 0 0 1 0 2 CCDC40 chr17:78022560 5'GT 78022560 Upstream 82bp 16403 chr1 206647748 206647748 1 + G T COAD 206647749 + 206647729 206647769 41 CCCGCGAGGTGCAAGTGAGGGAGTTTGAGGTCCTGCGGAAG CCCGCGAGGTGCAAGTGAGTGAGTTTGAGGTCCTGCGGAAG < 41bp 0.586062074977279 0.861170450130196 NA NA prediction 0.550216750305836 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206647749 chr1:206647748 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17327 0 0 0 0 2 IKBKE chr1:206647674 3'AG 206647674 Downstream 75bp 16404 chr1 206647748 206647748 1 + G T COAD 206647749 + 206647729 206647769 41 CCCGCGAGGTGCAAGTGAGGGAGTTTGAGGTCCTGCGGAAG CCCGCGAGGTGCAAGTGAGTGAGTTTGAGGTCCTGCGGAAG < 41bp 0.586062074977279 0.861170450130196 NA NA prediction 0.550216750305836 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206647749 chr1:206647748 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17327 0 0 0 0 2 IKBKE chr1:206647814 5'GT 206647814 Upstream 67bp 16405 chr3 158310320 158310320 1 + G T STAD 158310321 + 158310301 158310341 41 CAGTATCTCTGATGGTAGAGGGAGAGCTCATAATCGTAGAG CAGTATCTCTGATGGTAGATGGAGAGCTCATAATCGTAGAG < 41bp 0.556068021219804 0.831164970555624 NA NA prediction 0.550193898671639 Functional Gain - MLF1 ENSG00000178053 CDS Human protein_coding chr3:158310321 chr3:158310320 nonsynonymous SNV 0.860 3 20 hm7G_associated_SNPs_17328 0 0 1 0 2 MLF1 chr3:158310223 3'AG 158310223 Downstream 98bp 16406 chr3 158310320 158310320 1 + G T STAD 158310321 + 158310301 158310341 41 CAGTATCTCTGATGGTAGAGGGAGAGCTCATAATCGTAGAG CAGTATCTCTGATGGTAGATGGAGAGCTCATAATCGTAGAG < 41bp 0.556068021219804 0.831164970555624 NA NA prediction 0.550193898671639 Functional Gain - MLF1 ENSG00000178053 CDS Human protein_coding chr3:158310321 chr3:158310320 nonsynonymous SNV 0.860 3 20 hm7G_associated_SNPs_17328 0 0 1 0 2 MLF1 chr3:158310370 5'GT 158310370 Upstream 51bp 16407 chr6 167708167 167708167 1 + G T LUSC 167708168 + 167708148 167708188 41 CTACGTGGCCTTCTCCGTGGGCAACTTCTTCGCCAGCTGGT CTACGTGGCCTTCTCCGTGTGCAACTTCTTCGCCAGCTGGT < 41bp 0.579393205617837 0.854483611877506 NA NA prediction 0.550180812519338 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708168 chr6:167708167 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_17329 0 0 1 0 1 UNC93A chr6:167708186 5'GT 167708186 Upstream 20bp 16408 chr3 170011186 170011186 1 + G T LUAD 170011187 + 170011167 170011207 41 GAAGGTTTCAGTGTTGACTGGTGGGCTCTTGGAGTGCTCAT GAAGGTTTCAGTGTTGACTTGTGGGCTCTTGGAGTGCTCAT < 41bp 0.519547608229063 0.794631471782688 NA NA prediction 0.550167727107249 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170011187 chr3:170011186 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17331 0 0 1 0 1 PRKCI chr3:170011171 3'AG 170011171 Downstream 16bp 16409 chr22 43831096 43831096 1 + G T BLCA 43831097 + 43831077 43831117 41 TGGGGACTTCACTGAGCTGGGGCTCCCGAGCGAGGTGAAGA TGGGGACTTCACTGAGCTGTGGCTCCCGAGCGAGGTGAAGA < 41bp 0.59287795352094 0.86795846032425 NA NA prediction 0.55016101360662 Functional Gain - MPPED1 ENSG00000186732 CDS Human protein_coding chr22:43831097 chr22:43831096 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_17332 0 0 0 0 1 MPPED1 chr22:43831135 5'GT 43831135 Upstream 40bp 16410 chr19 36207122 36207122 1 + G T ESCA 36207123 + 36207103 36207143 41 GCCCCTCCTGCTCGGTCTCGGCCCTATGCGTGCTCTGTCTG GCCCCTCCTGCTCGGTCTCTGCCCTATGCGTGCTCTGTCTG < 41bp 0.58453196683863 0.859595671423131 NA NA prediction 0.550127409169001 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207123 chr19:36207122 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_17334 0 0 0 0 2 ZBTB32 chr19:36207035 3'AG 36207035 Downstream 88bp 16411 chr19 36207122 36207122 1 + G T ESCA 36207123 + 36207103 36207143 41 GCCCCTCCTGCTCGGTCTCGGCCCTATGCGTGCTCTGTCTG GCCCCTCCTGCTCGGTCTCTGCCCTATGCGTGCTCTGTCTG < 41bp 0.58453196683863 0.859595671423131 NA NA prediction 0.550127409169001 Functional Gain - ZBTB32 ENSG00000011590 CDS Human protein_coding chr19:36207123 chr19:36207122 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_17334 0 0 0 0 2 ZBTB32 chr19:36207199 5'GT 36207199 Upstream 78bp 16412 chr18 59894635 59894635 1 + G T OV 59894636 + 59894616 59894656 41 GAAAAGATCTTGTAGATGTGGCCAGTGGAGTAGAAGAAGAT GAAAAGATCTTGTAGATGTTGCCAGTGGAGTAGAAGAAGAT < 41bp 0.573800155057518 0.848802379606512 NA NA prediction 0.550004449097989 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59894636 chr18:59894635 synonymous SNV . 0 20 hm7G_associated_SNPs_17338 0 0 1 0 1 KIAA1468 chr18:59894725 5'GT 59894725 Upstream 91bp 16413 chr6 151936589 151936589 1 + G T ACC 151936590 + 151936570 151936610 41 CTTTCTAGATTAAAACTTTGGAACAGACTAAAGCCATTGAA CTTTCTAGATTAAAACTTTTGAACAGACTAAAGCCATTGAA < 41bp 0.490664493374599 0.774989538686664 NA NA prediction 0.549979077373329 Functional Gain - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151936590 chr6:151936589 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17339 0 0 0 0 1 CCDC170 chr6:151936578 3'AG 151936578 Downstream 12bp 16414 chr17 1939321 1939321 1 + G T BLCA 1939322 + 1939302 1939342 41 CCTACGGGGCTTGCTGTGTGGATGACTTCACAGCGAGGGCC CCTACGGGGCTTGCTGTGTTGATGACTTCACAGCGAGGGCC < 41bp 0.455376966943684 0.774981430147963 NA NA prediction 0.549962860295925 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1939322 chr17:1939321 synonymous SNV . 0 20 hm7G_associated_SNPs_17342 0 0 1 0 2 DPH1 chr17:1939264 3'AG 1939264 Downstream 58bp 16415 chr17 1939321 1939321 1 + G T BLCA 1939322 + 1939302 1939342 41 CCTACGGGGCTTGCTGTGTGGATGACTTCACAGCGAGGGCC CCTACGGGGCTTGCTGTGTTGATGACTTCACAGCGAGGGCC < 41bp 0.455376966943684 0.774981430147963 NA NA prediction 0.549962860295925 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1939322 chr17:1939321 synonymous SNV . 0 20 hm7G_associated_SNPs_17342 0 0 1 0 2 DPH1 chr17:1939385 5'GT 1939385 Upstream 65bp 16416 chr11 64699039 64699039 1 + G T LUAD 64699040 + 64699020 64699060 41 ATCTCCCACAGGTGATCCGGGGGCTGCTCAAATACTGGCCA ATCTCCCACAGGTGATCCGTGGGCTGCTCAAATACTGGCCA < 41bp 0.437166039493901 0.774978858412799 NA NA prediction 0.549957716825598 Functional Gain - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64699040 chr11:64699039 synonymous SNV . 0 20 hm7G_associated_SNPs_17343 0 0 1 0 2 PPP2R5B chr11:64699031 3'AG 64699031 Downstream 9bp 16417 chr11 64699039 64699039 1 + G T LUAD 64699040 + 64699020 64699060 41 ATCTCCCACAGGTGATCCGGGGGCTGCTCAAATACTGGCCA ATCTCCCACAGGTGATCCGTGGGCTGCTCAAATACTGGCCA < 41bp 0.437166039493901 0.774978858412799 NA NA prediction 0.549957716825598 Functional Gain - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64699040 chr11:64699039 synonymous SNV . 0 20 hm7G_associated_SNPs_17343 0 0 1 0 2 PPP2R5B chr11:64699081 5'GT 64699081 Upstream 43bp 16418 chr9 138415793 138415793 1 + G T TGCT 138415794 + 138415774 138415814 41 ACTACATCTTTTACTGTGAGGGCGAGCTGCACGGGAAGCCG ACTACATCTTTTACTGTGATGGCGAGCTGCACGGGAAGCCG < 41bp 0.578377477856867 0.85334113596304 NA NA prediction 0.549927316212347 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415794 chr9:138415793 nonsynonymous SNV 0.508 0 20 hm7G_associated_SNPs_17345 0 0 0 0 3 LCN1 chr9:138415726 3'AG 138415726 Downstream 68bp 16419 chr9 138415793 138415793 1 + G T TGCT 138415794 + 138415774 138415814 41 ACTACATCTTTTACTGTGAGGGCGAGCTGCACGGGAAGCCG ACTACATCTTTTACTGTGATGGCGAGCTGCACGGGAAGCCG < 41bp 0.578377477856867 0.85334113596304 NA NA prediction 0.549927316212347 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415794 chr9:138415793 nonsynonymous SNV 0.508 0 20 hm7G_associated_SNPs_17345 0 0 0 0 3 LCN1 chr9:138415823 5'GT 138415823 Upstream 31bp 16420 chr9 138415793 138415793 1 + G T TGCT 138415794 + 138415774 138415814 41 ACTACATCTTTTACTGTGAGGGCGAGCTGCACGGGAAGCCG ACTACATCTTTTACTGTGATGGCGAGCTGCACGGGAAGCCG < 41bp 0.578377477856867 0.85334113596304 NA NA prediction 0.549927316212347 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415794 chr9:138415793 nonsynonymous SNV 0.508 0 20 hm7G_associated_SNPs_17345 0 0 0 0 3 LCN1 chr9:138415836 5'GT 138415836 Upstream 44bp 16421 chr1 154315625 154315625 1 + G T LUAD 154315626 + 154315606 154315646 41 GCTCAGTCCCCAGATGAGGGGGCCCTGGTCACCGCAGCCAG GCTCAGTCCCCAGATGAGGTGGCCCTGGTCACCGCAGCCAG < 41bp 0.431793628487892 0.774961982183915 NA NA prediction 0.54992396436783 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154315626 chr1:154315625 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_17346 0 0 0 0 1 ATP8B2 chr1:154315589 3'AG 154315589 Downstream 37bp 16422 chr12 64860683 64860683 1 + G T LUAD 64860684 + 64860664 64860704 41 GTTTTATATTGTTGAAGTGGGTGGAATGAATCATCTACGAG GTTTTATATTGTTGAAGTGTGTGGAATGAATCATCTACGAG < 41bp 0.482939146061371 0.774960687640669 NA NA prediction 0.549921375281339 Functional Gain - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64860684 chr12:64860683 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_17347 0 0 1 0 1 TBK1 chr12:64860681 3'AG 64860681 Downstream 3bp 16423 chr9 2123724 2123724 1 + G T UCEC 2123725 + 2123705 2123745 41 ATTAATGTCTCCAGCGGATGGACATGGACCGGCGGAGGGAA ATTAATGTCTCCAGCGGATTGACATGGACCGGCGGAGGGAA < 41bp 0.579886388536327 0.854843737845217 NA NA prediction 0.549914698617781 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2123725 chr9:2123724 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_17348 0 0 1 0 1 SMARCA2 chr9:2123719 3'AG 2123719 Downstream 6bp 16424 chr14 100173937 100173937 1 + G T LUSC 100173938 + 100173918 100173958 41 TGGAGACCAGTATGCTGCTGGGTGCCCAGAAGCCTCTGTCC TGGAGACCAGTATGCTGCTTGGTGCCCAGAAGCCTCTGTCC < 41bp 0.569427530656119 0.844377899646499 NA NA prediction 0.549900737980761 Functional Gain - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100173938 chr14:100173937 synonymous SNV . 0 20 hm7G_associated_SNPs_17349 0 0 1 0 2 CYP46A1 chr14:100173905 3'AG 100173905 Downstream 33bp 16425 chr14 100173937 100173937 1 + G T LUSC 100173938 + 100173918 100173958 41 TGGAGACCAGTATGCTGCTGGGTGCCCAGAAGCCTCTGTCC TGGAGACCAGTATGCTGCTTGGTGCCCAGAAGCCTCTGTCC < 41bp 0.569427530656119 0.844377899646499 NA NA prediction 0.549900737980761 Functional Gain - CYP46A1 ENSG00000036530 CDS Human protein_coding chr14:100173938 chr14:100173937 synonymous SNV . 0 20 hm7G_associated_SNPs_17349 0 0 1 0 2 CYP46A1 chr14:100174015 5'GT 100174015 Upstream 79bp 16426 chr5 139189337 139189337 1 + G T STAD 139189338 + 139189318 139189358 41 CCTGGAGGGCTGGCGTGCTGGCAGAGGGGGACAATGCTTCC CCTGGAGGGCTGGCGTGCTTGCAGAGGGGGACAATGCTTCC < 41bp 0.583191066694441 0.858122799188881 NA NA prediction 0.549863464988882 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139189338 chr5:139189337 synonymous SNV . 0 20 hm7G_associated_SNPs_17352 0 0 0 0 1 PSD2 chr5:139189396 5'GT 139189396 Upstream 60bp 16427 chr5 55112291 55112291 1 + G T LUSC 55112292 + 55112272 55112312 41 TTTTTTAAATAATTACCAGGGCAAGAGCACTTTGAACACAG TTTTTTAAATAATTACCAGTGCAAGAGCACTTTGAACACAG < 41bp 0.503399681802829 0.77832676717906 NA NA prediction 0.549854170752463 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55112292 chr5:55112291 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_17353 0 0 0 0 1 DDX4 chr5:55112291 3'AG 55112291 Downstream 1bp 16428 chr17 47243577 47243577 1 + G T UCS 47243578 + 47243558 47243598 41 ACGAGGAGACCAAGATTGAGGTGCTGGTGGATGTCCTGGAG ACGAGGAGACCAAGATTGATGTGCTGGTGGATGTCCTGGAG < 41bp 0.580275721877502 0.855181338878141 NA NA prediction 0.549811234001279 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47243578 chr17:47243577 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_17354 0 0 0 0 1 B4GALNT2 chr17:47243616 5'GT 47243616 Upstream 40bp 16429 chr5 149001340 149001340 1 + G T LUAD 149001341 + 149001321 149001361 41 GGCAGCCACTGTGCAGCCTGGCCAAAGCCCTGCTTGGCCCT GGCAGCCACTGTGCAGCCTTGCCAAAGCCCTGCTTGGCCCT < 41bp 0.59450710416333 0.869400953089717 NA NA prediction 0.549787697852774 Functional Gain - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149001341 chr5:149001340 synonymous SNV . 0 20 hm7G_associated_SNPs_17355 0 0 0 0 1 ARHGEF37 chr5:149001296 3'AG 149001296 Downstream 45bp 16430 chr1 204092873 204092873 1 + G T UCEC 204092874 + 204092854 204092894 41 GTGTGGGCCAAGGATGAGCGGAGGAAGATCCTGCAAGCCTT GTGTGGGCCAAGGATGAGCTGAGGAAGATCCTGCAAGCCTT < 41bp 0.582781110697968 0.857667707556025 NA NA prediction 0.549773193716114 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204092874 chr1:204092873 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_17356 0 0 1 0 2 SOX13 chr1:204092789 3'AG 204092789 Downstream 85bp 16431 chr1 204092873 204092873 1 + G T UCEC 204092874 + 204092854 204092894 41 GTGTGGGCCAAGGATGAGCGGAGGAAGATCCTGCAAGCCTT GTGTGGGCCAAGGATGAGCTGAGGAAGATCCTGCAAGCCTT < 41bp 0.582781110697968 0.857667707556025 NA NA prediction 0.549773193716114 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204092874 chr1:204092873 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_17356 0 0 1 0 2 SOX13 chr1:204092932 5'GT 204092932 Upstream 60bp 16432 chr11 63996995 63996995 1 + G T rs185358682 63996996 + 63996976 63997016 41 GGAAGCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCT GGAAGCACTACCTGAGTGGTGGACCCGAGGCCCACGAGTCT < 41bp 0.586663529915726 0.861549202441451 NA NA prediction 0.549771345051451 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996996 chr11:63996995 synonymous SNV . 0 20 hm7G_associated_SNPs_17357 0 0 0 0 2 NUDT22 chr11:63996950 3'AG 63996950 Downstream 46bp 16433 chr11 63996995 63996995 1 + G T rs185358682 63996996 + 63996976 63997016 41 GGAAGCACTACCTGAGTGGGGGACCCGAGGCCCACGAGTCT GGAAGCACTACCTGAGTGGTGGACCCGAGGCCCACGAGTCT < 41bp 0.586663529915726 0.861549202441451 NA NA prediction 0.549771345051451 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63996996 chr11:63996995 synonymous SNV . 0 20 hm7G_associated_SNPs_17357 0 0 0 0 2 NUDT22 chr11:63997043 5'GT 63997043 Upstream 49bp 16434 chr19 51983881 51983881 1 + G T LUSC 51983882 + 51983862 51983902 41 ACGGGAAACTACACTGTTCGGGTGGTTGCAGGCAATGAGAC ACGGGAAACTACACTGTTCTGGTGGTTGCAGGCAATGAGAC < 41bp 0.57530778681586 0.850188796684839 NA NA prediction 0.549762019737957 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51983882 chr19:51983881 nonsynonymous SNV 0.008 1 20 hm7G_associated_SNPs_17360 0 0 0 0 1 CEACAM18 chr19:51983934 5'GT 51983934 Upstream 54bp 16435 chr1 89847284 89847284 1 + G T UCEC 89847285 + 89847265 89847305 41 TGGCAGTGACTTATGTAGAGGCCATCAACAGTGGAGCAGTG TGGCAGTGACTTATGTAGATGCCATCAACAGTGGAGCAGTG < 41bp 0.565082215044942 0.839951841108923 NA NA prediction 0.549739252127962 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89847285 chr1:89847284 nonsynonymous SNV 0.151 0 20 hm7G_associated_SNPs_17361 0 0 0 0 1 GBP6 chr1:89847253 3'AG 89847253 Downstream 32bp 16436 chr2 108910209 108910209 1 + G T LUSC 108910210 + 108910190 108910230 41 CCTGCAACTGTGGACAACTGGAGCCAGATCCAGAGCTTCGA CCTGCAACTGTGGACAACTTGAGCCAGATCCAGAGCTTCGA < 41bp 0.555018483516091 0.829882434494961 NA NA prediction 0.549727901957739 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910210 chr2:108910209 nonsynonymous SNV 0.932 3 20 hm7G_associated_SNPs_17363 0 0 0 0 1 SULT1C2 chr2:108910274 5'GT 108910274 Upstream 66bp 16437 chr11 55032470 55032470 1 + G T LUAD 55032471 + 55032451 55032491 41 CCCGGTCACCATAGACTGTGGGCACAGCTTTTGCAGGCCCT CCCGGTCACCATAGACTGTTGGCACAGCTTTTGCAGGCCCT < 41bp 0.572334586944938 0.847198481618613 NA NA prediction 0.54972778934735 Functional Gain - TRIM48 ENSG00000150244 CDS Human protein_coding chr11:55032471 chr11:55032470 nonsynonymous SNV 0.439 3 20 hm7G_associated_SNPs_17364 0 0 0 0 1 TRIM48 chr11:55032376 3'AG 55032376 Downstream 95bp 16438 chrX 70618499 70618499 1 + G T LUAD 70618500 + 70618480 70618520 41 AGGATTCAAGAGCAACTGAGGCGGCTTAAGAGGAACCAGGA AGGATTCAAGAGCAACTGATGCGGCTTAAGAGGAACCAGGA < 41bp 0.570211271999508 0.8450655436415 NA NA prediction 0.549708543283983 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70618500 chrX:70618499 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_17365 0 0 1 0 2 TAF1 chrX:70618422 3'AG 70618422 Downstream 78bp 16439 chrX 70618499 70618499 1 + G T LUAD 70618500 + 70618480 70618520 41 AGGATTCAAGAGCAACTGAGGCGGCTTAAGAGGAACCAGGA AGGATTCAAGAGCAACTGATGCGGCTTAAGAGGAACCAGGA < 41bp 0.570211271999508 0.8450655436415 NA NA prediction 0.549708543283983 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70618500 chrX:70618499 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_17365 0 0 1 0 2 TAF1 chrX:70618587 5'GT 70618587 Upstream 89bp 16440 chr3 115395427 115395427 1 + G T LUAD 115395428 + 115395408 115395448 41 CCAGCCTCCAACGGAGACTGGGGAGAGCAGCCAAGCTGAAG CCAGCCTCCAACGGAGACTTGGGAGAGCAGCCAAGCTGAAG < 41bp 0.57490830746795 0.84975795121657 NA NA prediction 0.54969928749724 Functional Gain - GAP43 ENSG00000172020 CDS Human protein_coding chr3:115395428 chr3:115395427 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_17366 0 0 0 0 1 GAP43 chr3:115395457 5'GT 115395457 Upstream 31bp 16441 chr17 76063904 76063904 1 + G T UCEC 76063905 + 76063885 76063925 41 AACCTCAGTACCAGCCAGTGGGAGGATGAAGAAGGGGACGT AACCTCAGTACCAGCCAGTTGGAGGATGAAGAAGGGGACGT < 41bp 0.58919327293506 0.864038223856773 NA NA prediction 0.549689901843427 Functional Gain - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76063905 chr17:76063904 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17367 0 0 0 0 1 TNRC6C chr17:76063838 3'AG 76063838 Downstream 67bp 16442 chr1 1115448 1115448 1 + G T UCEC 1115449 + 1115429 1115469 41 GGCCAATGGGGAGCAGCCAGGAGGAGGGACTCCGGTGTCAG GGCCAATGGGGAGCAGCCATGAGGAGGGACTCCGGTGTCAG < 41bp 0.455078962763454 0.774840034449096 NA NA prediction 0.549680068898193 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1115449 chr1:1115448 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_17369 0 0 0 0 1 TTLL10 chr1:1115414 3'AG 1115414 Downstream 35bp 16443 chr16 31374572 31374572 1 + G T LUAD 31374573 + 31374553 31374593 41 CGGCTCTGACAGTGCTGGGGGATGTGAATGGGGACAAGCTG CGGCTCTGACAGTGCTGGGTGATGTGAATGGGGACAAGCTG < 41bp 0.591545530161325 0.866385285260168 NA NA prediction 0.549679510197685 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31374573 chr16:31374572 synonymous SNV . 0 20 hm7G_associated_SNPs_17370 0 0 0 0 1 ITGAX chr16:31374486 3'AG 31374486 Downstream 87bp 16444 chr17 4798699 4798699 1 + G T GBM 4798700 + 4798680 4798720 41 ATGTTGCTGGACCGAAGTGGGCAGGGCAAGGTGTATGGACT ATGTTGCTGGACCGAAGTGTGCAGGGCAAGGTGTATGGACT < 41bp 0.587701986946695 0.862530813262786 NA NA prediction 0.549657652632181 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4798700 chr17:4798699 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_17371 0 0 1 0 2 MINK1 chr17:4798645 3'AG 4798645 Downstream 55bp 16445 chr17 4798699 4798699 1 + G T GBM 4798700 + 4798680 4798720 41 ATGTTGCTGGACCGAAGTGGGCAGGGCAAGGTGTATGGACT ATGTTGCTGGACCGAAGTGTGCAGGGCAAGGTGTATGGACT < 41bp 0.587701986946695 0.862530813262786 NA NA prediction 0.549657652632181 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4798700 chr17:4798699 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_17371 0 0 1 0 2 MINK1 chr17:4798788 5'GT 4798788 Upstream 90bp 16446 chr9 35750883 35750883 1 + G T LUSC 35750884 + 35750864 35750904 41 AGGGACCACCCTCCTTTCGGGGTCAGTCAGTCAAGTACGTC AGGGACCACCCTCCTTTCGTGGTCAGTCAGTCAAGTACGTC < 41bp 0.588053242900247 0.862863469955126 NA NA prediction 0.549620454109757 Functional Gain - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35750884 chr9:35750883 synonymous SNV . 0 20 hm7G_associated_SNPs_17372 0 0 1 0 1 RGP1 chr9:35750837 3'AG 35750837 Downstream 47bp 16447 chr19 42351661 42351661 1 + G T LUAD 42351662 + 42351642 42351682 41 GTGTCACCGCCCATCTCAAGGGCCACAAGCGCCTCTGCCTC GTGTCACCGCCCATCTCAATGGCCACAAGCGCCTCTGCCTC < 41bp 0.558818600934946 0.833622489278785 NA NA prediction 0.549607776687677 Functional Gain - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42351662 chr19:42351661 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17373 0 0 0 0 1 DMRTC2 chr19:42351720 5'GT 42351720 Upstream 60bp 16448 chr11 43464879 43464879 1 + G T LIHC 43464880 + 43464860 43464900 41 GCCCTTGAATTTCAGGTACGGTGGTTGAGGAGAGCAATGGT GCCCTTGAATTTCAGGTACTGTGGTTGAGGAGAGCAATGGT < 41bp 0.472710611663626 0.77480274628262 NA NA prediction 0.549605492565239 Functional Gain - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43464880 chr11:43464879 synonymous SNV . 0 20 hm7G_associated_SNPs_17374 0 0 1 0 1 TTC17 chr11:43464875 3'AG 43464875 Downstream 5bp 16449 chr17 59543214 59543214 1 + G T CESC 59543215 + 59543195 59543235 41 CTACAAGGTAAAAGTCACAGGCATGAACCCCAAGACCAAGT CTACAAGGTAAAAGTCACATGCATGAACCCCAAGACCAAGT < 41bp 0.582947470943352 0.857744618545162 NA NA prediction 0.549594295203621 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59543215 chr17:59543214 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_17375 0 0 0 0 2 TBX4 chr17:59543180 3'AG 59543180 Downstream 35bp 16450 chr17 59543214 59543214 1 + G T CESC 59543215 + 59543195 59543235 41 CTACAAGGTAAAAGTCACAGGCATGAACCCCAAGACCAAGT CTACAAGGTAAAAGTCACATGCATGAACCCCAAGACCAAGT < 41bp 0.582947470943352 0.857744618545162 NA NA prediction 0.549594295203621 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59543215 chr17:59543214 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_17375 0 0 0 0 2 TBX4 chr17:59543299 5'GT 59543299 Upstream 86bp 16451 chr1 43675504 43675504 1 + G T COAD 43675505 + 43675485 43675525 41 GTTTGTGGGCACCTCGGTGGGAACCATTCGTGCCATGAAGT GTTTGTGGGCACCTCGGTGTGAACCATTCGTGCCATGAAGT < 41bp 0.445763643185404 0.77478305789913 NA NA prediction 0.549566115798259 Functional Gain - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43675505 chr1:43675504 stopgain 0.946 1 20 hm7G_associated_SNPs_17376 0 0 0 0 2 CFAP57 chr1:43675414 3'AG 43675414 Downstream 91bp 16452 chr1 43675504 43675504 1 + G T COAD 43675505 + 43675485 43675525 41 GTTTGTGGGCACCTCGGTGGGAACCATTCGTGCCATGAAGT GTTTGTGGGCACCTCGGTGTGAACCATTCGTGCCATGAAGT < 41bp 0.445763643185404 0.77478305789913 NA NA prediction 0.549566115798259 Functional Gain - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43675505 chr1:43675504 stopgain 0.946 1 20 hm7G_associated_SNPs_17376 0 0 0 0 2 CFAP57 chr1:43675587 5'GT 43675587 Upstream 84bp 16453 chr16 24902277 24902277 1 + G T LUAD 24902278 + 24902258 24902298 41 AGTGAGAACAGCAGCTGCGGGCTGCCCCGGGAAGATGCCTT AGTGAGAACAGCAGCTGCGTGCTGCCCCGGGAAGATGCCTT < 41bp 0.589862747025014 0.864638589416439 NA NA prediction 0.549551684782851 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24902278 chr16:24902277 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_17378 0 0 0 0 1 SLC5A11 chr16:24902190 3'AG 24902190 Downstream 88bp 16454 chr20 44639592 44639592 1 + G T UCEC 44639593 + 44639573 44639613 41 GGTATCCCTTCGACGGGAAGGACGGGCTCCTGGCACACGCC GGTATCCCTTCGACGGGAATGACGGGCTCCTGGCACACGCC < 41bp 0.589875712417784 0.864642004909845 NA NA prediction 0.549532584984122 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639593 chr20:44639592 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17379 0 0 0 0 2 MMP9 chr20:44639561 3'AG 44639561 Downstream 32bp 16455 chr20 44639592 44639592 1 + G T UCEC 44639593 + 44639573 44639613 41 GGTATCCCTTCGACGGGAAGGACGGGCTCCTGGCACACGCC GGTATCCCTTCGACGGGAATGACGGGCTCCTGGCACACGCC < 41bp 0.589875712417784 0.864642004909845 NA NA prediction 0.549532584984122 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639593 chr20:44639592 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17379 0 0 0 0 2 MMP9 chr20:44639689 5'GT 44639689 Upstream 98bp 16456 chr10 71136709 71136709 1 + G T LUSC 71136710 + 71136690 71136730 41 GTTTGAGAAGATGGTCAGTGGCATGTACTTGGGAGAGCTGG GTTTGAGAAGATGGTCAGTTGCATGTACTTGGGAGAGCTGG < 41bp 0.587448304135306 0.862202369071902 NA NA prediction 0.549508129873191 Functional Gain - HK1 ENSG00000156515 CDS Human protein_coding chr10:71136710 chr10:71136709 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17381 0 0 1 0 1 HK1 chr10:71136690 3'AG 71136690 Downstream 20bp 16457 chr7 20698148 20698148 1 + G T LIHC 20698149 + 20698129 20698169 41 AAATTTAATACATTGGTAGGGGAAAAAGGAGCTCAAATGAG AAATTTAATACATTGGTAGTGGAAAAAGGAGCTCAAATGAG < 41bp 0.471424127721526 0.774753277060729 NA NA prediction 0.549506554121459 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20698149 chr7:20698148 nonsynonymous SNV 0.938 5 20 hm7G_associated_SNPs_17382 0 0 0 0 1 ABCB5 chr7:20698129 3'AG 20698129 Downstream 20bp 16458 chr2 55747027 55747027 1 + G T SARC 55747028 + 55747008 55747048 41 ACTGGTCCATCCCCATCTTGGACTTTGTGGAACAGAAATGT ACTGGTCCATCCCCATCTTTGACTTTGTGGAACAGAAATGT < 41bp 0.563650985501839 0.838372240785246 NA NA prediction 0.549442510566813 Functional Gain - CFAP36 ENSG00000163001 CDS Human protein_coding chr2:55747028 chr2:55747027 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17385 0 0 1 0 1 CFAP36 chr2:55747052 5'GT 55747052 Upstream 26bp 16459 chr7 157023821 157023821 1 + G T COAD 157023822 + 157023802 157023842 41 GCACTTGCTCAATGCCCATGGCCTGGATGAAGCTGGCATTG GCACTTGCTCAATGCCCATTGCCTGGATGAAGCTGGCATTG < 41bp 0.441109460189941 0.774711963928023 NA NA prediction 0.549423927856045 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:157023822 chr7:157023821 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_17386 0 0 1 0 1 UBE3C chr7:157023774 3'AG 157023774 Downstream 48bp 16460 chr11 68705678 68705678 1 + G T LUAD 68705679 + 68705659 68705699 41 CCACAGATCTGCCCACGGAGGAGGACTTTGAGGCCCTGGTT CCACAGATCTGCCCACGGATGAGGACTTTGAGGCCCTGGTT < 41bp 0.441247135837936 0.774687971872579 NA NA prediction 0.549375943745158 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68705679 chr11:68705678 nonsynonymous SNV 0.481 0 20 hm7G_associated_SNPs_17389 0 0 1 0 1 IGHMBP2 chr11:68705650 3'AG 68705650 Downstream 29bp 16461 chr7 89749127 89749127 1 + G T LUAD 89749128 + 89749108 89749148 41 TGGCGCAGCTCCGGGAAGAGGTGCACGAACTGCAGGCGTGG TGGCGCAGCTCCGGGAAGATGTGCACGAACTGCAGGCGTGG < 41bp 0.479779357809483 0.774663669904495 NA NA prediction 0.549327339808989 Functional Gain - DPY19L2P4 ENSG00000235436 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:89749128 chr7:89749127 . . 0 20 hm7G_associated_SNPs_17390 0 0 0 0 1 DPY19L2P4 chr7:89749179 5'GT 89749179 Upstream 53bp 16462 chr1 178489853 178489853 1 + G T LUAD 178489854 + 178489834 178489874 41 AGCAGGAACTCAGGCTGATGGGAAAGACTCACAGAGAACCA AGCAGGAACTCAGGCTGATTGGAAAGACTCACAGAGAACCA < 41bp 0.565140720891027 0.839778404848005 NA NA prediction 0.549275367913955 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178489854 chr1:178489853 nonsynonymous SNV 0.038 0 20 hm7G_associated_SNPs_17392 0 0 0 0 1 TEX35 chr1:178489808 3'AG 178489808 Downstream 46bp 16463 chr1 40954849 40954849 1 + G T LGG 40954850 + 40954830 40954870 41 ACCAGAATCTATACCGAGAGGTGATGCTGGAGAACTACAGC ACCAGAATCTATACCGAGATGTGATGCTGGAGAACTACAGC < 41bp 0.570370124113504 0.844998536682905 NA NA prediction 0.549256825138801 Functional Gain - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954850 chr1:40954849 nonsynonymous SNV 0.976 0 20 hm7G_associated_SNPs_17393 0 0 1 0 2 ZFP69 chr1:40954760 3'AG 40954760 Downstream 90bp 16464 chr1 40954849 40954849 1 + G T LGG 40954850 + 40954830 40954870 41 ACCAGAATCTATACCGAGAGGTGATGCTGGAGAACTACAGC ACCAGAATCTATACCGAGATGTGATGCTGGAGAACTACAGC < 41bp 0.570370124113504 0.844998536682905 NA NA prediction 0.549256825138801 Functional Gain - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954850 chr1:40954849 nonsynonymous SNV 0.976 0 20 hm7G_associated_SNPs_17393 0 0 1 0 2 ZFP69 chr1:40954886 5'GT 40954886 Upstream 38bp 16465 chr19 17885887 17885887 1 + G T LUSC 17885888 + 17885868 17885908 41 TTTCCTGGAGCCCGATTCAGGGGTGAGTGATGTGGGAGGGG TTTCCTGGAGCCCGATTCATGGGTGAGTGATGTGGGAGGGG < 41bp 0.578777076184022 0.853391041852053 NA NA prediction 0.549227931336062 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885888 chr19:17885887 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_17394 0 0 1 0 2 FCHO1 chr19:17885865 3'AG 17885865 Downstream 23bp 16466 chr19 17885887 17885887 1 + G T LUSC 17885888 + 17885868 17885908 41 TTTCCTGGAGCCCGATTCAGGGGTGAGTGATGTGGGAGGGG TTTCCTGGAGCCCGATTCATGGGTGAGTGATGTGGGAGGGG < 41bp 0.578777076184022 0.853391041852053 NA NA prediction 0.549227931336062 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885888 chr19:17885887 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_17394 0 0 1 0 2 FCHO1 chr19:17885889 5'GT 17885889 Upstream 3bp 16467 chr7 138853105 138853105 1 + G T LAML 138853106 + 138853086 138853126 41 CTAGGAGTATATTCTCAAAGGAGTGGTCAATGCAGCCCTTG CTAGGAGTATATTCTCAAATGAGTGGTCAATGCAGCCCTTG < 41bp 0.46158348230361 0.774607521696648 NA NA prediction 0.549215043393296 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138853106 chr7:138853105 stopgain 1.000 1 20 hm7G_associated_SNPs_17395 0 0 0 0 2 TTC26 chr7:138853090 3'AG 138853090 Downstream 16bp 16468 chr7 138853105 138853105 1 + G T LAML 138853106 + 138853086 138853126 41 CTAGGAGTATATTCTCAAAGGAGTGGTCAATGCAGCCCTTG CTAGGAGTATATTCTCAAATGAGTGGTCAATGCAGCCCTTG < 41bp 0.46158348230361 0.774607521696648 NA NA prediction 0.549215043393296 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138853106 chr7:138853105 stopgain 1.000 1 20 hm7G_associated_SNPs_17395 0 0 0 0 2 TTC26 chr7:138853143 5'GT 138853143 Upstream 39bp 16469 chr15 22382703 22382703 1 + G T HNSC 22382704 + 22382684 22382724 41 CATCCTACTCCTTCATTGTGGCTCCCAGGATGTTGGTGGAC CATCCTACTCCTTCATTGTTGCTCCCAGGATGTTGGTGGAC < 41bp 0.56219748890828 0.836795291224453 NA NA prediction 0.549195604632347 Functional Gain - OR4N4 ENSG00000183706 CDS Human protein_coding chr15:22382704 chr15:22382703 synonymous SNV . 0 20 hm7G_associated_SNPs_17396 0 0 0 0 1 OR4N4 chr15:22382742 5'GT 22382742 Upstream 40bp 16470 chr5 176079789 176079789 1 + G T UCEC 176079790 + 176079770 176079810 41 CTTCCTGGAGCTGGCAACAGGGATCCTGGCCTTTGTCTTCA CTTCCTGGAGCTGGCAACATGGATCCTGGCCTTTGTCTTCA < 41bp 0.587196312932956 0.861791273741959 NA NA prediction 0.549189921618007 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176079790 chr5:176079789 nonsynonymous SNV 0.959 5 20 hm7G_associated_SNPs_17397 0 0 1 0 1 TSPAN17 chr5:176079744 3'AG 176079744 Downstream 46bp 16471 chr7 49842323 49842323 1 + G T HNSC 49842324 + 49842304 49842344 41 CAGGTGTCTCCATGCGAGAGGTGTCGCTGTGAAGCCAACGG CAGGTGTCTCCATGCGAGATGTGTCGCTGTGAAGCCAACGG < 41bp 0.457637894858059 0.774575158887217 NA NA prediction 0.549150317774435 Functional Gain - VWC2 ENSG00000188730 CDS Human protein_coding chr7:49842324 chr7:49842323 nonsynonymous SNV 0.907 3 20 hm7G_associated_SNPs_17399 0 0 0 0 1 VWC2 chr7:49842307 3'AG 49842307 Downstream 17bp 16472 chr16 23200981 23200981 1 + G T UCEC 23200982 + 23200962 23201002 41 CGAGTCCAAGCAAGTGGTGGGATTCCAACTGGTAAGATTTC CGAGTCCAAGCAAGTGGTGTGATTCCAACTGGTAAGATTTC < 41bp 0.569902993020522 0.844467463059486 NA NA prediction 0.549128940077928 Functional Gain - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23200982 chr16:23200981 stopgain 0.984 1 20 hm7G_associated_SNPs_17400 0 0 0 0 1 SCNN1G chr16:23200992 5'GT 23200992 Upstream 12bp 16473 chr1 109810619 109810619 1 + G T LUAD 109810620 + 109810600 109810640 41 AGCTGGCCACGCGGCTGCTGGCCCACGAGAGCACCCAGCGG AGCTGGCCACGCGGCTGCTTGCCCACGAGAGCACCCAGCGG < 41bp 0.443641836655552 0.774550713259024 NA NA prediction 0.549101426518049 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109810620 chr1:109810619 synonymous SNV . 0 20 hm7G_associated_SNPs_17403 0 0 0 0 1 CELSR2 chr1:109810682 5'GT 109810682 Upstream 64bp 16474 chr6 43225617 43225617 1 + G T SKCM 43225618 + 43225598 43225638 41 GAGAATGAGGCCTTTGACTGGGAGAAGGCAGGCACCGATGC GAGAATGAGGCCTTTGACTTGGAGAAGGCAGGCACCGATGC < 41bp 0.593243917088305 0.867794369053786 NA NA prediction 0.549100903930963 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43225618 chr6:43225617 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17404 0 0 0 0 2 TTBK1 chr6:43225550 3'AG 43225550 Downstream 68bp 16475 chr6 43225617 43225617 1 + G T SKCM 43225618 + 43225598 43225638 41 GAGAATGAGGCCTTTGACTGGGAGAAGGCAGGCACCGATGC GAGAATGAGGCCTTTGACTTGGAGAAGGCAGGCACCGATGC < 41bp 0.593243917088305 0.867794369053786 NA NA prediction 0.549100903930963 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43225618 chr6:43225617 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17404 0 0 0 0 2 TTBK1 chr6:43225704 5'GT 43225704 Upstream 88bp 16476 chr16 48304097 48304097 1 + G T UCEC 48304098 + 48304078 48304118 41 AGTTGGTAAAACAAGTGTGGGAAGATCAGTGGCCAAGACTC AGTTGGTAAAACAAGTGTGTGAAGATCAGTGGCCAAGACTC < 41bp 0.458867265446095 0.774525686139054 NA NA prediction 0.549051372278108 Functional Gain - LONP2 ENSG00000102910 CDS Human protein_coding chr16:48304098 chr16:48304097 stopgain 0.999 1 20 hm7G_associated_SNPs_17406 0 0 1 0 1 LONP2 chr16:48304185 5'GT 48304185 Upstream 89bp 16477 chr1 167666424 167666424 1 + G T KIRC 167666425 + 167666405 167666445 41 GGAGAACTTGGAGATTTCAGGGCGGTGGAGTCATCTCAGCA GGAGAACTTGGAGATTTCATGGCGGTGGAGTCATCTCAGCA < 41bp 0.579671689209833 0.854193743873925 NA NA prediction 0.549044109328183 Functional Gain - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167666425 chr1:167666424 nonsynonymous SNV 0.861 2 20 hm7G_associated_SNPs_17407 0 0 0 0 1 RCSD1 chr1:167666336 3'AG 167666336 Downstream 89bp 16478 chrX 129474255 129474255 1 + G T LUAD 129474256 + 129474236 129474276 41 TGCTACCCAGAGGGTGAATGGGTATCTTTCCCGGAATAATC TGCTACCCAGAGGGTGAATTGGTATCTTTCCCGGAATAATC < 41bp 0.451155122613241 0.77451648888414 NA NA prediction 0.549032977768281 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129474256 chrX:129474255 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17408 0 0 0 0 2 SLC25A14 chrX:129474318 5'GT 129474318 Upstream 64bp 16479 chrX 129474255 129474255 1 + G T LUAD 129474256 + 129474236 129474276 41 TGCTACCCAGAGGGTGAATGGGTATCTTTCCCGGAATAATC TGCTACCCAGAGGGTGAATTGGTATCTTTCCCGGAATAATC < 41bp 0.451155122613241 0.77451648888414 NA NA prediction 0.549032977768281 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129474256 chrX:129474255 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17408 0 0 0 0 2 SLC25A14 chrX:129474327 5'GT 129474327 Upstream 73bp 16480 chr11 1857722 1857722 1 + G T LUAD 1857723 + 1857703 1857743 41 AACTTCAAGCGCTTCTCGGGGCATGAGCCCCTGGGTGAGCT AACTTCAAGCGCTTCTCGGTGCATGAGCCCCTGGGTGAGCT < 41bp 0.579701901102828 0.85421582342769 NA NA prediction 0.549027844649725 Functional Gain - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1857723 chr11:1857722 nonsynonymous SNV 0.008 1 20 hm7G_associated_SNPs_17409 0 0 0 0 1 SYT8 chr11:1857655 3'AG 1857655 Downstream 68bp 16481 chr11 57461262 57461262 1 + G T UCEC 57461263 + 57461243 57461283 41 CTCGACACTTAGGTATTTGGGGAGACCAAAGAAAGAGAAGA CTCGACACTTAGGTATTTGTGGAGACCAAAGAAAGAGAAGA < 41bp 0.580930991793877 0.855444728435951 NA NA prediction 0.549027473284148 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57461263 chr11:57461262 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17410 0 0 1 0 1 ZDHHC5 chr11:57461255 3'AG 57461255 Downstream 8bp 16482 chr16 19628040 19628040 1 + G T ACC 19628041 + 19628021 19628061 41 CGGTCCAGAACCAGCTGGTGGTCCAAGGAGTGGAGCTCCCA CGGTCCAGAACCAGCTGGTTGTCCAAGGAGTGGAGCTCCCA < 41bp 0.442366558055471 0.774506841047594 NA NA prediction 0.549013682095187 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19628041 chr16:19628040 synonymous SNV . 0 20 hm7G_associated_SNPs_17411 0 0 1 0 2 C16orf62 chr16:19628008 3'AG 19628008 Downstream 33bp 16483 chr16 19628040 19628040 1 + G T ACC 19628041 + 19628021 19628061 41 CGGTCCAGAACCAGCTGGTGGTCCAAGGAGTGGAGCTCCCA CGGTCCAGAACCAGCTGGTTGTCCAAGGAGTGGAGCTCCCA < 41bp 0.442366558055471 0.774506841047594 NA NA prediction 0.549013682095187 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19628041 chr16:19628040 synonymous SNV . 0 20 hm7G_associated_SNPs_17411 0 0 1 0 2 C16orf62 chr16:19628130 5'GT 19628130 Upstream 91bp 16484 chr2 113404703 113404703 1 + G T GBM 113404704 + 113404684 113404724 41 GATGTACAACTCGACTCAAGGGCTGCTGATGGCCGGCTCAG GATGTACAACTCGACTCAATGGCTGCTGATGGCCGGCTCAG < 41bp 0.574839053907474 0.84934101356725 NA NA prediction 0.549003919319552 Functional Gain - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113404704 chr2:113404703 nonsynonymous SNV 0.007 2 20 hm7G_associated_SNPs_17412 0 0 1 0 1 SLC20A1 chr2:113404739 5'GT 113404739 Upstream 37bp 16485 chr8 143560689 143560689 1 + G T LUAD 143560690 + 143560670 143560710 41 GCCACGCCCCGCAGTGGATGGCAAGTGGCAGGCCTGGGCGT GCCACGCCCCGCAGTGGATTGCAAGTGGCAGGCCTGGGCGT < 41bp 0.587059733123674 0.861561611147778 NA NA prediction 0.549003756048207 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143560690 chr8:143560689 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_17413 0 0 0 0 1 ADGRB1 chr8:143560684 3'AG 143560684 Downstream 6bp 16486 chr7 117149106 117149106 1 + G T SKCM 117149107 + 117149087 117149127 41 GAGAATGGGATAGAGAGCTGGCTTCAAAGAAAAATCCTAAA GAGAATGGGATAGAGAGCTTGCTTCAAAGAAAAATCCTAAA < 41bp 0.465225221655726 0.774488900312319 NA NA prediction 0.548977800624638 Functional Gain - CFTR ENSG00000001626 CDS Human protein_coding chr7:117149107 chr7:117149106 synonymous SNV . 0 20 hm7G_associated_SNPs_17415 0 0 0 0 2 CFTR chr7:117149088 3'AG 117149088 Downstream 19bp 16487 chr7 117149106 117149106 1 + G T SKCM 117149107 + 117149087 117149127 41 GAGAATGGGATAGAGAGCTGGCTTCAAAGAAAAATCCTAAA GAGAATGGGATAGAGAGCTTGCTTCAAAGAAAAATCCTAAA < 41bp 0.465225221655726 0.774488900312319 NA NA prediction 0.548977800624638 Functional Gain - CFTR ENSG00000001626 CDS Human protein_coding chr7:117149107 chr7:117149106 synonymous SNV . 0 20 hm7G_associated_SNPs_17415 0 0 0 0 2 CFTR chr7:117149196 5'GT 117149196 Upstream 91bp 16488 chr1 178485770 178485770 1 + G T UCEC 178485771 + 178485751 178485791 41 TAAAGGATCTAATGGACAAGGATTTTGATAAACTTCACGAA TAAAGGATCTAATGGACAATGATTTTGATAAACTTCACGAA < 41bp 0.563179770635647 0.837651334174084 NA NA prediction 0.548943127076875 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178485771 chr1:178485770 stopgain 0.996 2 20 hm7G_associated_SNPs_17416 0 0 0 0 3 TEX35 chr1:178485728 3'AG 178485728 Downstream 43bp 16489 chr1 178485770 178485770 1 + G T UCEC 178485771 + 178485751 178485791 41 TAAAGGATCTAATGGACAAGGATTTTGATAAACTTCACGAA TAAAGGATCTAATGGACAATGATTTTGATAAACTTCACGAA < 41bp 0.563179770635647 0.837651334174084 NA NA prediction 0.548943127076875 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178485771 chr1:178485770 stopgain 0.996 2 20 hm7G_associated_SNPs_17416 0 0 0 0 3 TEX35 chr1:178485750 3'AG 178485750 Downstream 21bp 16490 chr1 178485770 178485770 1 + G T UCEC 178485771 + 178485751 178485791 41 TAAAGGATCTAATGGACAAGGATTTTGATAAACTTCACGAA TAAAGGATCTAATGGACAATGATTTTGATAAACTTCACGAA < 41bp 0.563179770635647 0.837651334174084 NA NA prediction 0.548943127076875 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178485771 chr1:178485770 stopgain 0.996 2 20 hm7G_associated_SNPs_17416 0 0 0 0 3 TEX35 chr1:178485809 5'GT 178485809 Upstream 40bp 16491 chr7 87005257 87005257 1 + G T LUAD 87005258 + 87005238 87005278 41 GTCCACATGTAACACCAGAGGATTATTCTGAGGTACTTAAC GTCCACATGTAACACCAGATGATTATTCTGAGGTACTTAAC < 41bp 0.467548254731808 0.774468552923591 NA NA prediction 0.548937105847182 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:87005258 chr7:87005257 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_17417 0 0 0 0 1 CROT chr7:87005269 5'GT 87005269 Upstream 13bp 16492 chr17 8170202 8170202 1 + G T LUSC 8170203 + 8170183 8170223 41 GGGCCACACAGGCGAGGCCGGGCCCCACGCCATGGTGAGGA GGGCCACACAGGCGAGGCCTGGCCCCACGCCATGGTGAGGA < 41bp 0.438743644825814 0.774456936458793 NA NA prediction 0.548913872917586 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170203 chr17:8170202 nonsynonymous SNV 0.235 4 20 hm7G_associated_SNPs_17418 0 0 1 0 1 PFAS chr17:8170216 5'GT 8170216 Upstream 15bp 16493 chr20 31375182 31375182 1 + G T UCEC 31375183 + 31375163 31375203 41 CCTACGCCCGCCTAGCCCAGGACAGCCAGCAGGGGGGCATG CCTACGCCCGCCTAGCCCATGACAGCCAGCAGGGGGGCATG < 41bp 0.449063064843489 0.774431458730852 NA NA prediction 0.548862917461703 Functional Gain - DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31375183 chr20:31375182 nonsynonymous SNV 0.021 2 20 hm7G_associated_SNPs_17419 0 0 1 0 1 DNMT3B chr20:31375257 5'GT 31375257 Upstream 76bp 16494 chr19 8319436 8319436 1 + G T LUSC 8319437 + 8319417 8319457 41 GTGAGGGATCAGACCAGGAGGCAAGTGAAGCCCAACGCCAC GTGAGGGATCAGACCAGGATGCAAGTGAAGCCCAACGCCAC < 41bp 0.502593463458903 0.777008753831378 NA NA prediction 0.548830580744951 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8319437 chr19:8319436 nonsynonymous SNV 0.496 0 20 hm7G_associated_SNPs_17421 0 0 1 0 2 CERS4 chr19:8319383 3'AG 8319383 Downstream 54bp 16495 chr19 8319436 8319436 1 + G T LUSC 8319437 + 8319417 8319457 41 GTGAGGGATCAGACCAGGAGGCAAGTGAAGCCCAACGCCAC GTGAGGGATCAGACCAGGATGCAAGTGAAGCCCAACGCCAC < 41bp 0.502593463458903 0.777008753831378 NA NA prediction 0.548830580744951 Functional Gain - CERS4 ENSG00000090661 CDS Human protein_coding chr19:8319437 chr19:8319436 nonsynonymous SNV 0.496 0 20 hm7G_associated_SNPs_17421 0 0 1 0 2 CERS4 chr19:8319500 5'GT 8319500 Upstream 65bp 16496 chr3 150174872 150174872 1 + G T SARC 150174873 + 150174853 150174893 41 TTTTTTCCAGTGCATCTGGGGGAGGTGTTGTAGCCATTGAC TTTTTTCCAGTGCATCTGGTGGAGGTGTTGTAGCCATTGAC < 41bp 0.465152315542806 0.774403933695595 NA NA prediction 0.54880786739119 Functional Gain - TSC22D2 ENSG00000196428 CDS Human protein_coding chr3:150174873 chr3:150174872 synonymous SNV . 0 20 hm7G_associated_SNPs_17422 0 0 1 0 2 TSC22D2 chr3:150174863 3'AG 150174863 Downstream 10bp 16497 chr3 150174872 150174872 1 + G T SARC 150174873 + 150174853 150174893 41 TTTTTTCCAGTGCATCTGGGGGAGGTGTTGTAGCCATTGAC TTTTTTCCAGTGCATCTGGTGGAGGTGTTGTAGCCATTGAC < 41bp 0.465152315542806 0.774403933695595 NA NA prediction 0.54880786739119 Functional Gain - TSC22D2 ENSG00000196428 CDS Human protein_coding chr3:150174873 chr3:150174872 synonymous SNV . 0 20 hm7G_associated_SNPs_17422 0 0 1 0 2 TSC22D2 chr3:150174914 5'GT 150174914 Upstream 43bp 16498 chr17 61561749 61561749 1 + G T LUAD 61561750 + 61561730 61561770 41 GGTGCTGAAGGACATGGTCGGCTTAGATGCCCTGGATGCCC GGTGCTGAAGGACATGGTCTGCTTAGATGCCCTGGATGCCC < 41bp 0.440818544511522 0.774401050154376 NA NA prediction 0.548802100308752 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61561750 chr17:61561749 nonsynonymous SNV 0.026 4 20 hm7G_associated_SNPs_17424 0 0 0 0 1 ACE chr17:61561691 3'AG 61561691 Downstream 59bp 16499 chr12 53819521 53819521 1 + G T LGG 53819522 + 53819502 53819542 41 TTGGGCCGGGCAGCTGCAAGGAAAACTGGTTGCCATCAAGG TTGGGCCGGGCAGCTGCAATGAAAACTGGTTGCCATCAAGG < 41bp 0.587864543911005 0.862261578668528 NA NA prediction 0.548794069515047 Functional Gain - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819522 chr12:53819521 stopgain 0.081 0 20 hm7G_associated_SNPs_17425 0 0 1 0 2 AMHR2 chr12:53819470 3'AG 53819470 Downstream 52bp 16500 chr12 53819521 53819521 1 + G T LGG 53819522 + 53819502 53819542 41 TTGGGCCGGGCAGCTGCAAGGAAAACTGGTTGCCATCAAGG TTGGGCCGGGCAGCTGCAATGAAAACTGGTTGCCATCAAGG < 41bp 0.587864543911005 0.862261578668528 NA NA prediction 0.548794069515047 Functional Gain - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53819522 chr12:53819521 stopgain 0.081 0 20 hm7G_associated_SNPs_17425 0 0 1 0 2 AMHR2 chr12:53819473 3'AG 53819473 Downstream 49bp 16501 chr12 109865318 109865318 1 + G T LUAD 109865319 + 109865299 109865339 41 GCATCAGATCAAATACCTGGGGCTGATGGAGCACCTGCGGG GCATCAGATCAAATACCTGTGGCTGATGGAGCACCTGCGGG < 41bp 0.582728804973543 0.857119533305858 NA NA prediction 0.54878145666463 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109865319 chr12:109865318 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17426 0 0 0 0 2 MYO1H chr12:109865274 3'AG 109865274 Downstream 45bp 16502 chr12 109865318 109865318 1 + G T LUAD 109865319 + 109865299 109865339 41 GCATCAGATCAAATACCTGGGGCTGATGGAGCACCTGCGGG GCATCAGATCAAATACCTGTGGCTGATGGAGCACCTGCGGG < 41bp 0.582728804973543 0.857119533305858 NA NA prediction 0.54878145666463 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109865319 chr12:109865318 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17426 0 0 0 0 2 MYO1H chr12:109865391 5'GT 109865391 Upstream 74bp 16503 chr18 59158027 59158027 1 + G T LUSC 59158028 + 59158008 59158048 41 GACCGACCCTTTGTATGTCGGCAAGGTAAGAAATGCCAAGT GACCGACCCTTTGTATGTCTGCAAGGTAAGAAATGCCAAGT < 41bp 0.552414948899378 0.826797455042148 NA NA prediction 0.548765012285541 Functional Gain - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59158028 chr18:59158027 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_17429 0 0 0 0 1 CDH20 chr18:59158032 5'GT 59158032 Upstream 6bp 16504 chr15 48056433 48056433 1 + G T HNSC 48056434 + 48056414 48056454 41 GAAAAAGTATTCAAAGGACGGTTTAAGGAACAGAAAACTCC GAAAAAGTATTCAAAGGACTGTTTAAGGAACAGAAAACTCC < 41bp 0.475541170737439 0.774348864085972 NA NA prediction 0.548697728171945 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48056434 chr15:48056433 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_17431 0 0 0 0 2 SEMA6D chr15:48056371 3'AG 48056371 Downstream 63bp 16505 chr15 48056433 48056433 1 + G T HNSC 48056434 + 48056414 48056454 41 GAAAAAGTATTCAAAGGACGGTTTAAGGAACAGAAAACTCC GAAAAAGTATTCAAAGGACTGTTTAAGGAACAGAAAACTCC < 41bp 0.475541170737439 0.774348864085972 NA NA prediction 0.548697728171945 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48056434 chr15:48056433 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_17431 0 0 0 0 2 SEMA6D chr15:48056502 5'GT 48056502 Upstream 70bp 16506 chr8 49986806 49986806 1 + G T COAD 49986807 + 49986787 49986827 41 TAATAGGGTTGCCTGAAGTGGCAGAATCCACCTGGTGGTTT TAATAGGGTTGCCTGAAGTTGCAGAATCCACCTGGTGGTTT < 41bp 0.530591743001949 0.804895717487191 NA NA prediction 0.548607948970484 Functional Gain - C8orf22 ENSG00000168333 CDS Human protein_coding chr8:49986807 chr8:49986806 synonymous SNV . 0 20 hm7G_associated_SNPs_17436 0 0 0 0 1 C8orf22 chr8:49986892 5'GT 49986892 Upstream 87bp 16507 chr1 44435938 44435938 1 + G T BRCA 44435939 + 44435919 44435959 41 TCCTCTTCCGGACCTGGACGGAGTGTACGAGCTGGAGCGAG TCCTCTTCCGGACCTGGACTGAGTGTACGAGCTGGAGCGAG < 41bp 0.563732462842228 0.838024619591658 NA NA prediction 0.548584313498859 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44435939 chr1:44435938 stopgain 0.889 0 20 hm7G_associated_SNPs_17440 0 0 1 0 1 DPH2 chr1:44435994 5'GT 44435994 Upstream 57bp 16508 chr2 219500575 219500575 1 + G T STAD 219500576 + 219500556 219500596 41 CCAAAGAGGGGTCCATTGTGGATCCACTGGTGAAAGTGCAG CCAAAGAGGGGTCCATTGTTGATCCACTGGTGAAAGTGCAG < 41bp 0.577987055857594 0.852267145022609 NA NA prediction 0.548560178330029 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219500576 chr2:219500575 synonymous SNV . 0 20 hm7G_associated_SNPs_17441 0 0 0 0 2 PLCD4 chr2:219500519 3'AG 219500519 Downstream 57bp 16509 chr2 219500575 219500575 1 + G T STAD 219500576 + 219500556 219500596 41 CCAAAGAGGGGTCCATTGTGGATCCACTGGTGAAAGTGCAG CCAAAGAGGGGTCCATTGTTGATCCACTGGTGAAAGTGCAG < 41bp 0.577987055857594 0.852267145022609 NA NA prediction 0.548560178330029 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219500576 chr2:219500575 synonymous SNV . 0 20 hm7G_associated_SNPs_17441 0 0 0 0 2 PLCD4 chr2:219500654 5'GT 219500654 Upstream 80bp 16510 chr4 1806088 1806088 1 + G T BLCA 1806089 + 1806069 1806109 41 TGGTGGAGGCTGACGAGGCGGGCAGTGTGTATGCAGGCATC TGGTGGAGGCTGACGAGGCTGGCAGTGTGTATGCAGGCATC < 41bp 0.441006777886 0.774274986249774 NA NA prediction 0.548549972499548 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806089 chr4:1806088 synonymous SNV . 0 20 hm7G_associated_SNPs_17442 0 0 0 0 1 FGFR3 chr4:1806057 3'AG 1806057 Downstream 32bp 16511 chr10 71690283 71690283 1 + G T LUSC 71690284 + 71690264 71690304 41 GGAGAGAAGGGGGAAAAAGGGGAGACAGGACAAGCAGGCTC GGAGAGAAGGGGGAAAAAGTGGAGACAGGACAAGCAGGCTC < 41bp 0.573446443094315 0.847713550772961 NA NA prediction 0.548534215357293 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71690284 chr10:71690283 nonsynonymous SNV 0.918 5 20 hm7G_associated_SNPs_17443 0 0 0 0 1 COL13A1 chr10:71690308 5'GT 71690308 Upstream 26bp 16512 chr20 36028539 36028539 1 + G T SARC 36028540 + 36028520 36028560 41 ACCTGGAACGGTACCACCAGGGTGGCCATCAAAACCCTGAA ACCTGGAACGGTACCACCATGGTGGCCATCAAAACCCTGAA < 41bp 0.595458330403635 0.869717450060525 NA NA prediction 0.54851823931378 Functional Gain - SRC ENSG00000197122 CDS Human protein_coding chr20:36028540 chr20:36028539 nonsynonymous SNV 0.927 3 20 hm7G_associated_SNPs_17444 0 0 1 0 1 SRC chr20:36028518 3'AG 36028518 Downstream 22bp 16513 chr2 226491704 226491704 1 + G T UCEC 226491705 + 226491685 226491725 41 GTTGGACAACAAGGAAAGAGGCCACCATGGGGCGTCTTCCT GTTGGACAACAAGGAAAGATGCCACCATGGGGCGTCTTCCT < 41bp 0.575003127544638 0.849255387124293 NA NA prediction 0.54850451915931 Functional Gain - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226491705 chr2:226491704 nonsynonymous SNV 0.898 4 20 hm7G_associated_SNPs_17445 0 0 0 0 1 NYAP2 chr2:226491633 3'AG 226491633 Downstream 72bp 16514 chr18 77891036 77891036 1 + G T LUAD 77891037 + 77891017 77891057 41 ACTTTCATAACACATCATGGGGTGATGTTTCTCTCTGGGAA ACTTTCATAACACATCATGTGGTGATGTTTCTCTCTGGGAA < 41bp 0.574898844127156 0.849147327473733 NA NA prediction 0.548496966693155 Functional Gain - ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77891037 chr18:77891036 nonsynonymous SNV 0.857 3 20 hm7G_associated_SNPs_17446 0 0 1 0 2 ADNP2 chr18:77890986 3'AG 77890986 Downstream 51bp 16515 chr18 77891036 77891036 1 + G T LUAD 77891037 + 77891017 77891057 41 ACTTTCATAACACATCATGGGGTGATGTTTCTCTCTGGGAA ACTTTCATAACACATCATGTGGTGATGTTTCTCTCTGGGAA < 41bp 0.574898844127156 0.849147327473733 NA NA prediction 0.548496966693155 Functional Gain - ADNP2 ENSG00000101544 CDS Human protein_coding chr18:77891037 chr18:77891036 nonsynonymous SNV 0.857 3 20 hm7G_associated_SNPs_17446 0 0 1 0 2 ADNP2 chr18:77891075 5'GT 77891075 Upstream 40bp 16516 chr16 67580276 67580276 1 + G T UCEC 67580277 + 67580257 67580297 41 CACTCATTACAGGAGAAGAGGGACAGTCTGCCCATCGACGG CACTCATTACAGGAGAAGATGGACAGTCTGCCCATCGACGG < 41bp 0.561351587358993 0.835594264767977 NA NA prediction 0.548485354817967 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67580277 chr16:67580276 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_17447 0 0 0 0 1 RIPOR1 chr16:67580269 3'AG 67580269 Downstream 8bp 16517 chr8 133848882 133848882 1 + G T UCEC 133848883 + 133848863 133848903 41 TTGATTCAACCAATTTTGAGGAATCTCAGGATGAGGATGAT TTGATTCAACCAATTTTGATGAATCTCAGGATGAGGATGAT < 41bp 0.561164306498405 0.835404625203496 NA NA prediction 0.548480637410183 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133848883 chr8:133848882 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17448 0 0 1 0 2 PHF20L1 chr8:133848785 3'AG 133848785 Downstream 98bp 16518 chr8 133848882 133848882 1 + G T UCEC 133848883 + 133848863 133848903 41 TTGATTCAACCAATTTTGAGGAATCTCAGGATGAGGATGAT TTGATTCAACCAATTTTGATGAATCTCAGGATGAGGATGAT < 41bp 0.561164306498405 0.835404625203496 NA NA prediction 0.548480637410183 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133848883 chr8:133848882 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17448 0 0 1 0 2 PHF20L1 chr8:133848966 5'GT 133848966 Upstream 85bp 16519 chr11 69972210 69972210 1 + G T LUAD 69972211 + 69972191 69972231 41 CCTGTACTTCGCCTGGCTGGGCGTGTACACCCAGATGCTCA CCTGTACTTCGCCTGGCTGTGCGTGTACACCCAGATGCTCA < 41bp 0.435155868355511 0.774235867496847 NA NA prediction 0.548471734993693 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69972211 chr11:69972210 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_17449 0 0 0 0 2 ANO1 chr11:69972167 3'AG 69972167 Downstream 44bp 16520 chr11 69972210 69972210 1 + G T LUAD 69972211 + 69972191 69972231 41 CCTGTACTTCGCCTGGCTGGGCGTGTACACCCAGATGCTCA CCTGTACTTCGCCTGGCTGTGCGTGTACACCCAGATGCTCA < 41bp 0.435155868355511 0.774235867496847 NA NA prediction 0.548471734993693 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69972211 chr11:69972210 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_17449 0 0 0 0 2 ANO1 chr11:69972301 5'GT 69972301 Upstream 92bp 16521 chr16 70154618 70154618 1 + G T LUAD 70154619 + 70154599 70154639 41 TATTGTCCTTTTGGAGCAGGGCAGGTAAGGATCAGACTGCA TATTGTCCTTTTGGAGCAGTGCAGGTAAGGATCAGACTGCA < 41bp 0.574919442724629 0.849144389939055 NA NA prediction 0.548449894428851 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70154619 chr16:70154618 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17450 0 0 0 0 1 PDPR chr16:70154622 5'GT 70154622 Upstream 5bp 16522 chr9 132571214 132571214 1 + G T LUAD 132571215 + 132571195 132571235 41 GGGACCTTATAACTAAGACGGCTCTTGACTTTTGGCGGGCC GGGACCTTATAACTAAGACTGCTCTTGACTTTTGGCGGGCC < 41bp 0.566460179603078 0.840675729002576 NA NA prediction 0.548431098798998 Functional Gain - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132571215 chr9:132571214 synonymous SNV . 0 20 hm7G_associated_SNPs_17451 0 0 1 0 2 TOR1B chr9:132571184 3'AG 132571184 Downstream 31bp 16523 chr9 132571214 132571214 1 + G T LUAD 132571215 + 132571195 132571235 41 GGGACCTTATAACTAAGACGGCTCTTGACTTTTGGCGGGCC GGGACCTTATAACTAAGACTGCTCTTGACTTTTGGCGGGCC < 41bp 0.566460179603078 0.840675729002576 NA NA prediction 0.548431098798998 Functional Gain - TOR1B ENSG00000136816 CDS Human protein_coding chr9:132571215 chr9:132571214 synonymous SNV . 0 20 hm7G_associated_SNPs_17451 0 0 1 0 2 TOR1B chr9:132571311 5'GT 132571311 Upstream 98bp 16524 chr10 90427346 90427346 1 + G T LUSC 90427347 + 90427327 90427367 41 GTCAGATGATTACTTATTGGGGATACCCAAATGAAGAATAT GTCAGATGATTACTTATTGTGGATACCCAAATGAAGAATAT < 41bp 0.469448734182418 0.774215507513192 NA NA prediction 0.548431015026384 Functional Gain - LIPF ENSG00000182333 CDS Human protein_coding chr10:90427347 chr10:90427346 nonsynonymous SNV 0.918 5 20 hm7G_associated_SNPs_17452 0 0 0 0 1 LIPF chr10:90427443 5'GT 90427443 Upstream 98bp 16525 chr19 11941142 11941142 1 + G T UCEC 11941143 + 11941123 11941163 41 CTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATT CTGTGAACTTCACCCAGGATGAGTGGGCTTTGCTGGATATT < 41bp 0.460353741421514 0.774214545250612 NA NA prediction 0.548429090501224 Functional Gain - ZNF440 ENSG00000171295 CDS Human protein_coding chr19:11941143 chr19:11941142 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_17453 0 0 0 0 2 ZNF440 chr19:11941098 3'AG 11941098 Downstream 45bp 16526 chr19 11941142 11941142 1 + G T UCEC 11941143 + 11941123 11941163 41 CTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATT CTGTGAACTTCACCCAGGATGAGTGGGCTTTGCTGGATATT < 41bp 0.460353741421514 0.774214545250612 NA NA prediction 0.548429090501224 Functional Gain - ZNF440 ENSG00000171295 CDS Human protein_coding chr19:11941143 chr19:11941142 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_17453 0 0 0 0 2 ZNF440 chr19:11941224 5'GT 11941224 Upstream 83bp 16527 chr12 57860075 57860075 1 + G T HNSC 57860076 + 57860056 57860096 41 AAGGAGTTCGTGTGCCACTGGGGGGGCTGCTCCAGGGAGCT AAGGAGTTCGTGTGCCACTTGGGGGGCTGCTCCAGGGAGCT < 41bp 0.593561119183281 0.867775525499202 NA NA prediction 0.548428812631842 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57860076 chr12:57860075 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17454 0 0 0 0 2 GLI1 chr12:57860023 3'AG 57860023 Downstream 53bp 16528 chr12 57860075 57860075 1 + G T HNSC 57860076 + 57860056 57860096 41 AAGGAGTTCGTGTGCCACTGGGGGGGCTGCTCCAGGGAGCT AAGGAGTTCGTGTGCCACTTGGGGGGCTGCTCCAGGGAGCT < 41bp 0.593561119183281 0.867775525499202 NA NA prediction 0.548428812631842 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57860076 chr12:57860075 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17454 0 0 0 0 2 GLI1 chr12:57860172 5'GT 57860172 Upstream 98bp 16529 chr7 31013718 31013718 1 + G T UCEC 31013719 + 31013699 31013739 41 TCCACCTCCCCCAGCTCAAGGAGAGCCTTCTGGTGGCTGGT TCCACCTCCCCCAGCTCAATGAGAGCCTTCTGGTGGCTGGT < 41bp 0.441228918472319 0.774211922564418 NA NA prediction 0.548423845128835 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31013719 chr7:31013718 nonsynonymous SNV 0.061 3 20 hm7G_associated_SNPs_17455 0 0 0 0 1 GHRHR chr7:31013753 5'GT 31013753 Upstream 36bp 16530 chr11 372748 372748 1 + G T LUAD 372749 + 372729 372769 41 ATCAGACACCCCCATGGCGGGAGGAGGTGAGCTGGCTCGGC ATCAGACACCCCCATGGCGTGAGGAGGTGAGCTGGCTCGGC < 41bp 0.578907568675559 0.853098729063578 NA NA prediction 0.548382320776037 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372749 chr11:372748 synonymous SNV . 0 20 hm7G_associated_SNPs_17456 0 0 1 0 2 B4GALNT4 chr11:372662 3'AG 372662 Downstream 87bp 16531 chr11 372748 372748 1 + G T LUAD 372749 + 372729 372769 41 ATCAGACACCCCCATGGCGGGAGGAGGTGAGCTGGCTCGGC ATCAGACACCCCCATGGCGTGAGGAGGTGAGCTGGCTCGGC < 41bp 0.578907568675559 0.853098729063578 NA NA prediction 0.548382320776037 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372749 chr11:372748 synonymous SNV . 0 20 hm7G_associated_SNPs_17456 0 0 1 0 2 B4GALNT4 chr11:372754 5'GT 372754 Upstream 7bp 16532 chr4 106819105 106819105 1 + G T LUAD 106819106 + 106819086 106819126 41 GGCCTATGTCGTTATGGTGGGAGGATTGACTGCTGCTGGGG GGCCTATGTCGTTATGGTGTGAGGATTGACTGCTGCTGGGG < 41bp 0.581535061777404 0.855725397358646 NA NA prediction 0.548380671162483 Functional Gain - NPNT ENSG00000168743 CDS Human protein_coding chr4:106819106 chr4:106819105 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_17457 0 0 1 0 1 NPNT chr4:106819058 3'AG 106819058 Downstream 48bp 16533 chrX 152815042 152815042 1 + G T LUAD 152815043 + 152815023 152815063 41 CATCTGCTCCGACAAGACGGGCACGCTCACCACCAACCGTA CATCTGCTCCGACAAGACGTGCACGCTCACCACCAACCGTA < 41bp 0.427817986602462 0.774189094612408 NA NA prediction 0.548378189224817 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152815043 chrX:152815042 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_17458 0 0 0 0 1 ATP2B3 chrX:152814955 3'AG 152814955 Downstream 88bp 16534 chr1 26507299 26507299 1 + G T UCEC 26507300 + 26507280 26507320 41 CATAGTCCAAGGCTGCCTGGGGGACTGTGCCAAGACCCCTA CATAGTCCAAGGCTGCCTGTGGGACTGTGCCAAGACCCCTA < 41bp 0.431647514803498 0.774172432406901 NA NA prediction 0.548344864813802 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507300 chr1:26507299 nonsynonymous SNV 0.022 3 20 hm7G_associated_SNPs_17461 0 0 0 2 2 CNKSR1 chr1:26507206 3'AG 26507206 Downstream 94bp 16535 chr1 26507299 26507299 1 + G T UCEC 26507300 + 26507280 26507320 41 CATAGTCCAAGGCTGCCTGGGGGACTGTGCCAAGACCCCTA CATAGTCCAAGGCTGCCTGTGGGACTGTGCCAAGACCCCTA < 41bp 0.431647514803498 0.774172432406901 NA NA prediction 0.548344864813802 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26507300 chr1:26507299 nonsynonymous SNV 0.022 3 20 hm7G_associated_SNPs_17461 0 0 0 2 2 CNKSR1 chr1:26507387 5'GT 26507387 Upstream 89bp 16536 chr2 171804859 171804859 1 + G T UCEC 171804860 + 171804840 171804880 41 TGTCGTTTTTGTTTCCGCAGGTACAAGAAAATTCCCCAGGA TGTCGTTTTTGTTTCCGCATGTACAAGAAAATTCCCCAGGA < 41bp 0.539383544758311 0.813554730545395 NA NA prediction 0.548342371574169 Functional Gain - GORASP2 ENSG00000115806 splicing Human protein_coding chr2:171804860 chr2:171804859 . 0.998 0 20 hm7G_associated_SNPs_17463 0 0 1 0 1 GORASP2 chr2:171804940 5'GT 171804940 Upstream 82bp 16537 chr7 129950740 129950740 1 + G T rs2171492 129950741 + 129950721 129950761 41 AAAACATGGGAATTTCAAGGGCTTCATCGACCTGCACAGCT AAAACATGGGAATTTCAAGTGCTTCATCGACCTGCACAGCT < 41bp 0.585243840369902 0.859408116338035 NA NA prediction 0.548328551936266 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129950741 chr7:129950740 nonsynonymous SNV 0.818 0 20 hm7G_associated_SNPs_17465 0 0 0 0 1 CPA4 chr7:129950826 5'GT 129950826 Upstream 87bp 16538 chr19 1272050 1272050 1 + G T UCEC 1272051 + 1272031 1272071 41 AGACAGTTATGACAGTTACGGTAAGTCACACTCCGAGGGCG AGACAGTTATGACAGTTACTGTAAGTCACACTCCGAGGGCG < 41bp 0.460691998471695 0.774162820249313 NA NA prediction 0.548325640498627 Functional Gain - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272051 chr19:1272050 stopgain 0.272 0 20 hm7G_associated_SNPs_17467 0 0 1 1 2 CIRBP chr19:1271980 3'AG 1271980 Downstream 71bp 16539 chr19 1272050 1272050 1 + G T UCEC 1272051 + 1272031 1272071 41 AGACAGTTATGACAGTTACGGTAAGTCACACTCCGAGGGCG AGACAGTTATGACAGTTACTGTAAGTCACACTCCGAGGGCG < 41bp 0.460691998471695 0.774162820249313 NA NA prediction 0.548325640498627 Functional Gain - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1272051 chr19:1272050 stopgain 0.272 0 20 hm7G_associated_SNPs_17467 0 0 1 1 2 CIRBP chr19:1272050 5'GT 1272050 Upstream 1bp 16540 chr20 30070126 30070126 1 + G T LUAD 30070127 + 30070107 30070147 41 GGAGTCATGCCTGCAGGGGGGCAGTGCCTATGTCATCGTAT GGAGTCATGCCTGCAGGGGTGCAGTGCCTATGTCATCGTAT < 41bp 0.582337519647394 0.856496973341795 NA NA prediction 0.5483189073888 Functional Gain - REM1 ENSG00000088320 CDS Human protein_coding chr20:30070127 chr20:30070126 nonsynonymous SNV 0.591 4 20 hm7G_associated_SNPs_17468 0 0 0 0 1 REM1 chr20:30070090 3'AG 30070090 Downstream 37bp 16541 chr15 67893048 67893048 1 + G T THCA 67893049 + 67893029 67893069 41 GAACAAGACATACGATATCGGGACACTCTTGGTCATGGCAA GAACAAGACATACGATATCTGGACACTCTTGGTCATGGCAA < 41bp 0.453208743019166 0.774155187472532 NA NA prediction 0.548310374945063 Functional Gain - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67893049 chr15:67893048 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17469 0 0 1 0 2 MAP2K5 chr15:67893023 3'AG 67893023 Downstream 26bp 16542 chr15 67893048 67893048 1 + G T THCA 67893049 + 67893029 67893069 41 GAACAAGACATACGATATCGGGACACTCTTGGTCATGGCAA GAACAAGACATACGATATCTGGACACTCTTGGTCATGGCAA < 41bp 0.453208743019166 0.774155187472532 NA NA prediction 0.548310374945063 Functional Gain - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67893049 chr15:67893048 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17469 0 0 1 0 2 MAP2K5 chr15:67893087 5'GT 67893087 Upstream 40bp 16543 chr1 154221748 154221748 1 + G T LIHC 154221749 + 154221729 154221769 41 GAAAGGATTTGGTGATGTCGGTGAAGCTAAAGGCGGCAGTA GAAAGGATTTGGTGATGTCTGTGAAGCTAAAGGCGGCAGTA < 41bp 0.570230079109731 0.844382500563814 NA NA prediction 0.548304842908167 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154221749 chr1:154221748 nonsynonymous SNV 0.841 4 20 hm7G_associated_SNPs_17472 0 0 1 0 1 UBAP2L chr1:154221715 3'AG 154221715 Downstream 34bp 16544 chr10 7763668 7763668 1 + G T LUSC 7763669 + 7763649 7763689 41 GAATATGCCCTAACTGCCGGGAGACTGCGGTAGATGGGGAA GAATATGCCCTAACTGCCGTGAGACTGCGGTAGATGGGGAA < 41bp 0.585027902357049 0.859173541807209 NA NA prediction 0.54829127890032 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763669 chr10:7763668 synonymous SNV . 0 20 hm7G_associated_SNPs_17474 0 0 1 0 2 ITIH2 chr10:7763612 3'AG 7763612 Downstream 57bp 16545 chr10 7763668 7763668 1 + G T LUSC 7763669 + 7763649 7763689 41 GAATATGCCCTAACTGCCGGGAGACTGCGGTAGATGGGGAA GAATATGCCCTAACTGCCGTGAGACTGCGGTAGATGGGGAA < 41bp 0.585027902357049 0.859173541807209 NA NA prediction 0.54829127890032 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7763669 chr10:7763668 synonymous SNV . 0 20 hm7G_associated_SNPs_17474 0 0 1 0 2 ITIH2 chr10:7763740 5'GT 7763740 Upstream 73bp 16546 chr20 42162015 42162015 1 + G T LUAD 42162016 + 42161996 42162036 41 GCCCCTACATCCACCCAGTGGGCTGGTGCCAGAAGCAAGGA GCCCCTACATCCACCCAGTTGGCTGGTGCCAGAAGCAAGGA < 41bp 0.426901431026325 0.774143284186845 NA NA prediction 0.54828656837369 Functional Gain - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42162016 chr20:42162015 synonymous SNV . 0 20 hm7G_associated_SNPs_17475 0 0 1 0 2 L3MBTL1 chr20:42161982 3'AG 42161982 Downstream 34bp 16547 chr20 42162015 42162015 1 + G T LUAD 42162016 + 42161996 42162036 41 GCCCCTACATCCACCCAGTGGGCTGGTGCCAGAAGCAAGGA GCCCCTACATCCACCCAGTTGGCTGGTGCCAGAAGCAAGGA < 41bp 0.426901431026325 0.774143284186845 NA NA prediction 0.54828656837369 Functional Gain - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42162016 chr20:42162015 synonymous SNV . 0 20 hm7G_associated_SNPs_17475 0 0 1 0 2 L3MBTL1 chr20:42162058 5'GT 42162058 Upstream 44bp 16548 chr19 46506741 46506741 1 + G T LUAD 46506742 + 46506722 46506762 41 ACATCTTCTGTCATATGCTGGAGTCAGCCCTCACTCAGGTA ACATCTTCTGTCATATGCTTGAGTCAGCCCTCACTCAGGTA < 41bp 0.440173574780769 0.774139630935311 NA NA prediction 0.548279261870622 Functional Gain - CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46506742 chr19:46506741 synonymous SNV . 0 20 hm7G_associated_SNPs_17476 0 0 0 0 2 CCDC61 chr19:46506677 3'AG 46506677 Downstream 65bp 16549 chr19 46506741 46506741 1 + G T LUAD 46506742 + 46506722 46506762 41 ACATCTTCTGTCATATGCTGGAGTCAGCCCTCACTCAGGTA ACATCTTCTGTCATATGCTTGAGTCAGCCCTCACTCAGGTA < 41bp 0.440173574780769 0.774139630935311 NA NA prediction 0.548279261870622 Functional Gain - CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46506742 chr19:46506741 synonymous SNV . 0 20 hm7G_associated_SNPs_17476 0 0 0 0 2 CCDC61 chr19:46506759 5'GT 46506759 Upstream 19bp 16550 chr12 9083073 9083073 1 + G T PAAD 9083074 + 9083054 9083094 41 TCAACAGGCCTCAGCTCAAGGACCTCAGATGCAAGGCTCCA TCAACAGGCCTCAGCTCAATGACCTCAGATGCAAGGCTCCA < 41bp 0.586373061694271 0.860496246883402 NA NA prediction 0.548246370378264 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9083074 chr12:9083073 stopgain 1.000 1 20 hm7G_associated_SNPs_17478 0 0 0 0 1 PHC1 chr12:9083031 3'AG 9083031 Downstream 43bp 16551 chr1 18661457 18661457 1 + G T BLCA 18661458 + 18661438 18661478 41 ATCTACGACCGCGCCACCAGGGAGAAGGTGGTCCTGGCATC ATCTACGACCGCGCCACCATGGAGAAGGTGGTCCTGGCATC < 41bp 0.586282696832804 0.860396718229663 NA NA prediction 0.548228042793717 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661458 chr1:18661457 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_17480 0 0 0 0 2 IGSF21 chr1:18661386 3'AG 18661386 Downstream 72bp 16552 chr1 18661457 18661457 1 + G T BLCA 18661458 + 18661438 18661478 41 ATCTACGACCGCGCCACCAGGGAGAAGGTGGTCCTGGCATC ATCTACGACCGCGCCACCATGGAGAAGGTGGTCCTGGCATC < 41bp 0.586282696832804 0.860396718229663 NA NA prediction 0.548228042793717 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18661458 chr1:18661457 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_17480 0 0 0 0 2 IGSF21 chr1:18661504 5'GT 18661504 Upstream 48bp 16553 chr1 15893676 15893676 1 + G T UCEC 15893677 + 15893657 15893697 41 CTTGGTACGTCTGAGGCCAGGCCACATGAATGTGGTCCTCA CTTGGTACGTCTGAGGCCATGCCACATGAATGTGGTCCTCA < 41bp 0.566461946000692 0.840572211616261 NA NA prediction 0.54822053123114 Functional Gain - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15893677 chr1:15893676 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_17481 0 0 0 4 2 DNAJC16 chr1:15893594 3'AG 15893594 Downstream 83bp 16554 chr1 15893676 15893676 1 + G T UCEC 15893677 + 15893657 15893697 41 CTTGGTACGTCTGAGGCCAGGCCACATGAATGTGGTCCTCA CTTGGTACGTCTGAGGCCATGCCACATGAATGTGGTCCTCA < 41bp 0.566461946000692 0.840572211616261 NA NA prediction 0.54822053123114 Functional Gain - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15893677 chr1:15893676 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_17481 0 0 0 4 2 DNAJC16 chr1:15893764 5'GT 15893764 Upstream 89bp 16555 chr16 81953096 81953096 1 + G T LUSC 81953097 + 81953077 81953117 41 TTCCTGCTCCAGGGCTAGGGGCAAGGTAAAGCATTGTCGCA TTCCTGCTCCAGGGCTAGGTGCAAGGTAAAGCATTGTCGCA < 41bp 0.584441094896956 0.858531810640111 NA NA prediction 0.548181431486309 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81953097 chr16:81953096 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_17483 0 0 0 0 1 PLCG2 chr16:81953089 3'AG 81953089 Downstream 8bp 16556 chr3 13661268 13661268 1 + G T LUSC 13661269 + 13661249 13661289 41 GGTGTGCAGCACTGTTGGGGGCTCAGCCATATGCTCCTGTT GGTGTGCAGCACTGTTGGGTGCTCAGCCATATGCTCCTGTT < 41bp 0.430309129524625 0.774077369155704 NA NA prediction 0.548154738311409 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13661269 chr3:13661268 nonsynonymous SNV 0.061 4 20 hm7G_associated_SNPs_17486 0 0 0 0 2 FBLN2 chr3:13661230 3'AG 13661230 Downstream 39bp 16557 chr3 13661268 13661268 1 + G T LUSC 13661269 + 13661249 13661289 41 GGTGTGCAGCACTGTTGGGGGCTCAGCCATATGCTCCTGTT GGTGTGCAGCACTGTTGGGTGCTCAGCCATATGCTCCTGTT < 41bp 0.430309129524625 0.774077369155704 NA NA prediction 0.548154738311409 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13661269 chr3:13661268 nonsynonymous SNV 0.061 4 20 hm7G_associated_SNPs_17486 0 0 0 0 2 FBLN2 chr3:13661331 5'GT 13661331 Upstream 64bp 16558 chr1 206658346 206658346 1 + G T COAD 206658347 + 206658327 206658367 41 CCTCAAGGTTCAGCAGCGTGGCTGGAACGCCTGAGATCCAG CCTCAAGGTTCAGCAGCGTTGCTGGAACGCCTGAGATCCAG < 41bp 0.434233432917272 0.774073892364018 NA NA prediction 0.548147784728036 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206658347 chr1:206658346 synonymous SNV . 0 20 hm7G_associated_SNPs_17488 0 0 1 0 2 IKBKE chr1:206658334 3'AG 206658334 Downstream 13bp 16559 chr1 206658346 206658346 1 + G T COAD 206658347 + 206658327 206658367 41 CCTCAAGGTTCAGCAGCGTGGCTGGAACGCCTGAGATCCAG CCTCAAGGTTCAGCAGCGTTGCTGGAACGCCTGAGATCCAG < 41bp 0.434233432917272 0.774073892364018 NA NA prediction 0.548147784728036 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206658347 chr1:206658346 synonymous SNV . 0 20 hm7G_associated_SNPs_17488 0 0 1 0 2 IKBKE chr1:206658409 5'GT 206658409 Upstream 64bp 16560 chr17 53084896 53084896 1 + G T THCA 53084897 + 53084877 53084917 41 TGCCTGGACTGAAAATTATGGGCTACAAGAAAAGATCTCCC TGCCTGGACTGAAAATTATTGGCTACAAGAAAAGATCTCCC < 41bp 0.455637032951191 0.774071868658655 NA NA prediction 0.54814373731731 Functional Gain - STXBP4 ENSG00000166263 CDS Human protein_coding chr17:53084897 chr17:53084896 nonsynonymous SNV 0.393 3 20 hm7G_associated_SNPs_17489 0 0 1 0 2 STXBP4 chr17:53084867 3'AG 53084867 Downstream 30bp 16561 chr17 53084896 53084896 1 + G T THCA 53084897 + 53084877 53084917 41 TGCCTGGACTGAAAATTATGGGCTACAAGAAAAGATCTCCC TGCCTGGACTGAAAATTATTGGCTACAAGAAAAGATCTCCC < 41bp 0.455637032951191 0.774071868658655 NA NA prediction 0.54814373731731 Functional Gain - STXBP4 ENSG00000166263 CDS Human protein_coding chr17:53084897 chr17:53084896 nonsynonymous SNV 0.393 3 20 hm7G_associated_SNPs_17489 0 0 1 0 2 STXBP4 chr17:53084958 5'GT 53084958 Upstream 63bp 16562 chr7 128484068 128484068 1 + G T THCA 128484069 + 128484049 128484089 41 TCCACGCAGAGGTGGCTGTGGGACAGGAACAAGCATTCTCT TCCACGCAGAGGTGGCTGTTGGACAGGAACAAGCATTCTCT < 41bp 0.443364869905349 0.774054620711833 NA NA prediction 0.548109241423666 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128484069 chr7:128484068 synonymous SNV . 0 20 hm7G_associated_SNPs_17491 0 0 1 0 1 FLNC chr7:128484058 3'AG 128484058 Downstream 11bp 16563 chr6 33380123 33380123 1 + G T UCEC 33380124 + 33380104 33380144 41 GCTCCCACCTCTGGCCCCAGGCCTCGGCTTTGGGAGGGTCA GCTCCCACCTCTGGCCCCATGCCTCGGCTTTGGGAGGGTCA < 41bp 0.574138328774459 0.848180679121053 NA NA prediction 0.548084700693188 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380124 chr6:33380123 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_17493 0 0 1 2 2 PHF1 chr6:33380025 3'AG 33380025 Downstream 99bp 16564 chr6 33380123 33380123 1 + G T UCEC 33380124 + 33380104 33380144 41 GCTCCCACCTCTGGCCCCAGGCCTCGGCTTTGGGAGGGTCA GCTCCCACCTCTGGCCCCATGCCTCGGCTTTGGGAGGGTCA < 41bp 0.574138328774459 0.848180679121053 NA NA prediction 0.548084700693188 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380124 chr6:33380123 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_17493 0 0 1 2 2 PHF1 chr6:33380199 5'GT 33380199 Upstream 77bp 16565 chrX 49103971 49103971 1 + G T SARC 49103972 + 49103952 49103992 41 CTTAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTG CTTAGGAGCCCCAGGCCCATGCCACTCAGGTGTCAGATGTG < 41bp 0.432500657299866 0.774038064681085 NA NA prediction 0.54807612936217 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103972 chrX:49103971 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_17494 0 0 0 0 2 CCDC22 chrX:49103957 3'AG 49103957 Downstream 15bp 16566 chrX 49103971 49103971 1 + G T SARC 49103972 + 49103952 49103992 41 CTTAGGAGCCCCAGGCCCAGGCCACTCAGGTGTCAGATGTG CTTAGGAGCCCCAGGCCCATGCCACTCAGGTGTCAGATGTG < 41bp 0.432500657299866 0.774038064681085 NA NA prediction 0.54807612936217 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49103972 chrX:49103971 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_17494 0 0 0 0 2 CCDC22 chrX:49104019 5'GT 49104019 Upstream 49bp 16567 chr17 47293984 47293984 1 + G T LUAD 47293985 + 47293965 47294005 41 CAGGTGGGCAACCTGGCCGGGCACACTCTGCGCATGTTGGA CAGGTGGGCAACCTGGCCGTGCACACTCTGCGCATGTTGGA < 41bp 0.5951588887197 0.869195763820119 NA NA prediction 0.548073750200837 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47293985 chr17:47293984 nonsynonymous SNV 0.705 1 20 hm7G_associated_SNPs_17495 0 0 0 0 3 ABI3 chr17:47293893 3'AG 47293893 Downstream 92bp 16568 chr17 47293984 47293984 1 + G T LUAD 47293985 + 47293965 47294005 41 CAGGTGGGCAACCTGGCCGGGCACACTCTGCGCATGTTGGA CAGGTGGGCAACCTGGCCGTGCACACTCTGCGCATGTTGGA < 41bp 0.5951588887197 0.869195763820119 NA NA prediction 0.548073750200837 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47293985 chr17:47293984 nonsynonymous SNV 0.705 1 20 hm7G_associated_SNPs_17495 0 0 0 0 3 ABI3 chr17:47294042 5'GT 47294042 Upstream 59bp 16569 chr17 47293984 47293984 1 + G T LUAD 47293985 + 47293965 47294005 41 CAGGTGGGCAACCTGGCCGGGCACACTCTGCGCATGTTGGA CAGGTGGGCAACCTGGCCGTGCACACTCTGCGCATGTTGGA < 41bp 0.5951588887197 0.869195763820119 NA NA prediction 0.548073750200837 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47293985 chr17:47293984 nonsynonymous SNV 0.705 1 20 hm7G_associated_SNPs_17495 0 0 0 0 3 ABI3 chr17:47294060 5'GT 47294060 Upstream 77bp 16570 chr1 160104960 160104960 1 + G T LUAD 160104961 + 160104941 160104981 41 CAAGGCATGCGTGGTGCACGGCTCTGACCTGAAGGACATGA CAAGGCATGCGTGGTGCACTGCTCTGACCTGAAGGACATGA < 41bp 0.594156253692839 0.868177880156147 NA NA prediction 0.548043252926617 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160104961 chr1:160104960 nonsynonymous SNV 0.738 5 20 hm7G_associated_SNPs_17499 0 0 0 0 1 ATP1A2 chr1:160104935 3'AG 160104935 Downstream 26bp 16571 chr2 231865224 231865224 1 + G T UCEC 231865225 + 231865205 231865245 41 GCAGATGGCGCCAGGGAGAGGACTCCCCAACCTGCTCACCT GCAGATGGCGCCAGGGAGATGACTCCCCAACCTGCTCACCT < 41bp 0.451761291222555 0.774020937759922 NA NA prediction 0.548041875519843 Functional Gain - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231865225 chr2:231865224 stopgain 0.977 0 20 hm7G_associated_SNPs_17501 0 0 0 0 1 SPATA3 chr2:231865252 5'GT 231865252 Upstream 29bp 16572 chr6 24409692 24409692 1 + G T UCEC 24409693 + 24409673 24409713 41 TTTATTTCTTTTATAGAAAGGAAGAAAACTGAATTATACCA TTTATTTCTTTTATAGAAATGAAGAAAACTGAATTATACCA < 41bp 0.542974750084837 0.816962765849226 NA NA prediction 0.54797603152878 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24409693 chr6:24409692 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_17507 0 0 1 0 1 MRS2 chr6:24409689 3'AG 24409689 Downstream 4bp 16573 chr17 5036239 5036239 1 + G T BRCA 5036240 + 5036220 5036260 41 ATGACACGAACGAGCAAGTGGATGGAAATGCTGGGAGAATG ATGACACGAACGAGCAAGTTGATGGAAATGCTGGGAGAATG < 41bp 0.450676122975181 0.773987575775974 NA NA prediction 0.547975151551948 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5036240 chr17:5036239 nonsynonymous SNV 0.010 2 20 hm7G_associated_SNPs_17508 0 0 0 0 2 USP6 chr17:5036205 3'AG 5036205 Downstream 35bp 16574 chr17 5036239 5036239 1 + G T BRCA 5036240 + 5036220 5036260 41 ATGACACGAACGAGCAAGTGGATGGAAATGCTGGGAGAATG ATGACACGAACGAGCAAGTTGATGGAAATGCTGGGAGAATG < 41bp 0.450676122975181 0.773987575775974 NA NA prediction 0.547975151551948 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5036240 chr17:5036239 nonsynonymous SNV 0.010 2 20 hm7G_associated_SNPs_17508 0 0 0 0 2 USP6 chr17:5036285 5'GT 5036285 Upstream 47bp 16575 chr2 46808686 46808686 1 - C A COAD 46808685 - 46808665 46808705 41 GAGCGACCTTTGGCTACGTGGCTGGCCTTGTTATTTCACCA GAGCGACCTTTGGCTACGTTGCTGGCCTTGTTATTTCACCA < 41bp 0.569247731691878 0.843229113396442 NA NA prediction 0.547962763409128 Functional Gain - PIGF ENSG00000151665 CDS Human protein_coding chr2:46808685 chr2:46808686 synonymous SNV . 0 20 hm7G_associated_SNPs_17509 0 0 1 1 1 PIGF chr2:46808730 3'AG 46808730 Downstream 45bp 16576 chr1 161736162 161736162 1 + G T STAD 161736163 + 161736143 161736183 41 CTTGTGAAATGGGGGAGCCGGCTGGGGTTGCCGGCACCATG CTTGTGAAATGGGGGAGCCTGCTGGGGTTGCCGGCACCATG < 41bp 0.551421235988306 0.825392453844802 NA NA prediction 0.547942435712993 Functional Gain - ATF6 ENSG00000118217 CDS Human protein_coding chr1:161736163 chr1:161736162 synonymous SNV . 0 20 hm7G_associated_SNPs_17510 0 0 1 0 1 ATF6 chr1:161736232 5'GT 161736232 Upstream 71bp 16577 chr19 52074656 52074656 1 + G T rs3752130 52074657 + 52074637 52074677 41 AGGGGCGGCTGGCTTTGGGGGAGTGATGAGGGGCTTGTTGG AGGGGCGGCTGGCTTTGGGTGAGTGATGAGGGGCTTGTTGG < 41bp 0.487891936570683 0.773942823211453 NA NA prediction 0.547885646422905 Functional Gain - ZNF175 ENSG00000105497 UTR5 Human protein_coding chr19:52074657 chr19:52074656 . . 0 20 hm7G_associated_SNPs_17511 0 0 1 0 1 ZNF175 chr19:52074728 5'GT 52074728 Upstream 73bp 16578 chr6 80724203 80724203 1 + G T UCEC 80724204 + 80724184 80724224 41 TTCAAAATAGTCATTTCAAGGAACCTCTGGTGTCAGATGAA TTCAAAATAGTCATTTCAATGAACCTCTGGTGTCAGATGAA < 41bp 0.541770466323155 0.815698433800983 NA NA prediction 0.547855934955656 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80724204 chr6:80724203 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_17515 0 0 1 0 1 TTK chr6:80724180 3'AG 80724180 Downstream 24bp 16579 chr16 50250040 50250040 1 + G T OV 50250041 + 50250021 50250061 41 ACCTACCCCTCTGGACTCTGGAAGAAGCTCTTCGGAAACAC ACCTACCCCTCTGGACTCTTGAAGAAGCTCTTCGGAAACAC < 41bp 0.443842909284993 0.773911621954041 NA NA prediction 0.547823243908082 Functional Gain - PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50250041 chr16:50250040 synonymous SNV . 0 20 hm7G_associated_SNPs_17517 0 0 1 0 2 PAPD5 chr16:50249986 3'AG 50249986 Downstream 55bp 16580 chr16 50250040 50250040 1 + G T OV 50250041 + 50250021 50250061 41 ACCTACCCCTCTGGACTCTGGAAGAAGCTCTTCGGAAACAC ACCTACCCCTCTGGACTCTTGAAGAAGCTCTTCGGAAACAC < 41bp 0.443842909284993 0.773911621954041 NA NA prediction 0.547823243908082 Functional Gain - PAPD5 ENSG00000121274 CDS Human protein_coding chr16:50250041 chr16:50250040 synonymous SNV . 0 20 hm7G_associated_SNPs_17517 0 0 1 0 2 PAPD5 chr16:50250106 5'GT 50250106 Upstream 67bp 16581 chr10 71151936 71151936 1 + G T UCEC 71151937 + 71151917 71151957 41 AGAACGTGGAGATGGTGGAGGGGGACCAGGGGCAGATGTGC AGAACGTGGAGATGGTGGATGGGGACCAGGGGCAGATGTGC < 41bp 0.588472793785646 0.862374872522804 NA NA prediction 0.547804157474317 Functional Gain - HK1 ENSG00000156515 CDS Human protein_coding chr10:71151937 chr10:71151936 nonsynonymous SNV 0.730 1 20 hm7G_associated_SNPs_17518 0 0 1 0 1 HK1 chr10:71151881 3'AG 71151881 Downstream 56bp 16582 chr11 55655682 55655682 1 + G T COAD 55655683 + 55655663 55655703 41 TTCCAGGGAGCTTTTAAGAGGAATGTATGAGGATCTGAAGC TTCCAGGGAGCTTTTAAGATGAATGTATGAGGATCTGAAGC < 41bp 0.471559322565306 0.773901671785034 NA NA prediction 0.547803343570068 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55655683 chr11:55655682 stopgain 0.002 0 20 hm7G_associated_SNPs_17519 0 0 0 0 1 TRIM51 chr11:55655738 5'GT 55655738 Upstream 57bp 16583 chr19 54942041 54942041 1 + G T LAML 54942042 + 54942022 54942062 41 ACATCCACTCCCAGCTGCTGGGCCTGGAGCGAGAAGCTGTG ACATCCACTCCCAGCTGCTTGGCCTGGAGCGAGAAGCTGTG < 41bp 0.598364130326792 0.872257338759307 NA NA prediction 0.547786416865029 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942042 chr19:54942041 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_17520 0 0 0 0 2 TTYH1 chr19:54941991 3'AG 54941991 Downstream 51bp 16584 chr19 54942041 54942041 1 + G T LAML 54942042 + 54942022 54942062 41 ACATCCACTCCCAGCTGCTGGGCCTGGAGCGAGAAGCTGTG ACATCCACTCCCAGCTGCTTGGCCTGGAGCGAGAAGCTGTG < 41bp 0.598364130326792 0.872257338759307 NA NA prediction 0.547786416865029 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942042 chr19:54942041 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_17520 0 0 0 0 2 TTYH1 chr19:54942083 5'GT 54942083 Upstream 43bp 16585 chr15 79177320 79177320 1 + G T LUAD 79177321 + 79177301 79177341 41 TGTATCAGAAGTGCTGTGAGGCCCAGGCGCTCTGAAAAATC TGTATCAGAAGTGCTGTGATGCCCAGGCGCTCTGAAAAATC < 41bp 0.567090030212795 0.840975192233823 NA NA prediction 0.547770324042055 Functional Gain - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79177321 chr15:79177320 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17522 0 0 1 0 1 MORF4L1 chr15:79177309 3'AG 79177309 Downstream 12bp 16586 chr17 7246815 7246815 1 + G T UCEC 7246816 + 7246796 7246836 41 GGGCCCAGGAGGCAGAAGAGGCAGGAGCTGCTTTGAGGACG GGGCCCAGGAGGCAGAAGATGCAGGAGCTGCTTTGAGGACG < 41bp 0.589473480583627 0.863357958803593 NA NA prediction 0.547768956439933 Functional Gain - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7246816 chr17:7246815 nonsynonymous SNV 0.942 0 20 hm7G_associated_SNPs_17523 0 0 0 0 1 ACAP1 chr17:7246881 5'GT 7246881 Upstream 67bp 16587 chr4 4303783 4303783 1 + G T LUSC 4303784 + 4303764 4303804 41 GGATGTTAAAAATGTCAGTGGCATAGGGCAGATCCTGGACT GGATGTTAAAAATGTCAGTTGCATAGGGCAGATCCTGGACT < 41bp 0.454928390151244 0.773883837701423 NA NA prediction 0.547767675402846 Functional Gain - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4303784 chr4:4303783 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17524 0 0 1 0 1 ZBTB49 chr4:4303716 3'AG 4303716 Downstream 68bp 16588 chr6 131520613 131520613 1 + G T UCEC 131520614 + 131520594 131520634 41 TCTTCAGAGACTGCAAATAGGACATTTCAAGAAAAAGGCAT TCTTCAGAGACTGCAAATATGACATTTCAAGAAAAAGGCAT < 41bp 0.560708720809298 0.834566768736388 NA NA prediction 0.54771609585418 Functional Gain - AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131520614 chr6:131520613 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_17527 0 0 0 0 1 AKAP7 chr6:131520601 3'AG 131520601 Downstream 13bp 16589 chr11 64361120 64361120 1 + G T LUAD 64361121 + 64361101 64361141 41 TTGCAGTGATGGAGTGGACGGCGGCACGGGCCCGACCCTTG TTGCAGTGATGGAGTGGACTGCGGCACGGGCCCGACCCTTG < 41bp 0.456383127906481 0.773854785590971 NA NA prediction 0.547709571181941 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64361121 chr11:64361120 synonymous SNV . 0 20 hm7G_associated_SNPs_17529 0 0 0 0 1 SLC22A12 chr11:64361107 3'AG 64361107 Downstream 14bp 16590 chr19 12800833 12800833 1 - C A GBM 12800832 - 12800812 12800852 41 ACATCATCTCAGGCAGCGAGGACCACACCCTGGTGGTGGTG ACATCATCTCAGGCAGCGATGACCACACCCTGGTGGTGGTG < 41bp 0.591852278195008 0.865694438969841 NA NA prediction 0.547684321549665 Functional Gain - FBXW9 ENSG00000132004 CDS Human protein_coding chr19:12800832 chr19:12800833 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_17532 0 0 1 0 2 FBXW9 chr19:12800776 5'GT 12800776 Upstream 58bp 16591 chr19 12800833 12800833 1 - C A GBM 12800832 - 12800812 12800852 41 ACATCATCTCAGGCAGCGAGGACCACACCCTGGTGGTGGTG ACATCATCTCAGGCAGCGATGACCACACCCTGGTGGTGGTG < 41bp 0.591852278195008 0.865694438969841 NA NA prediction 0.547684321549665 Functional Gain - FBXW9 ENSG00000132004 CDS Human protein_coding chr19:12800832 chr19:12800833 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_17532 0 0 1 0 2 FBXW9 chr19:12800924 3'AG 12800924 Downstream 92bp 16592 chr1 67243030 67243030 1 + G T LUSC 67243031 + 67243011 67243051 41 CAGGCAGAGCATACTTATTGGAAGCAGATGCCTCTGGGATC CAGGCAGAGCATACTTATTTGAAGCAGATGCCTCTGGGATC < 41bp 0.531777250734724 0.805616820760328 NA NA prediction 0.547679140051207 Functional Gain - TCTEX1D1 ENSG00000152760 CDS Human protein_coding chr1:67243031 chr1:67243030 stopgain 0.969 1 20 hm7G_associated_SNPs_17533 0 0 0 0 1 TCTEX1D1 chr1:67242934 3'AG 67242934 Downstream 97bp 16593 chr3 113499964 113499964 1 + G T KIRC 113499965 + 113499945 113499985 41 GAGTGGGCCACAGCGAATTGGTTGGAGAGATTATTCGATTG GAGTGGGCCACAGCGAATTTGTTGGAGAGATTATTCGATTG < 41bp 0.458266337689636 0.773836739309971 NA NA prediction 0.547673478619941 Functional Gain - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113499965 chr3:113499964 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_17535 0 0 1 0 2 ATP6V1A chr3:113499897 3'AG 113499897 Downstream 68bp 16594 chr3 113499964 113499964 1 + G T KIRC 113499965 + 113499945 113499985 41 GAGTGGGCCACAGCGAATTGGTTGGAGAGATTATTCGATTG GAGTGGGCCACAGCGAATTTGTTGGAGAGATTATTCGATTG < 41bp 0.458266337689636 0.773836739309971 NA NA prediction 0.547673478619941 Functional Gain - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113499965 chr3:113499964 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_17535 0 0 1 0 2 ATP6V1A chr3:113500025 5'GT 113500025 Upstream 62bp 16595 chr10 89720693 89720693 1 + G T COAD 89720694 + 89720674 89720714 41 AAATACATTCTTCATACCAGGACCAGAGGAAACCTCAGAAA AAATACATTCTTCATACCATGACCAGAGGAAACCTCAGAAA < 41bp 0.554200674343353 0.82803107744704 NA NA prediction 0.547660806207373 Functional Gain - PTEN ENSG00000171862 CDS Human protein_coding chr10:89720694 chr10:89720693 stopgain 1.000 1 20 hm7G_associated_SNPs_17538 0 0 0 0 1 PTEN chr10:89720651 3'AG 89720651 Downstream 43bp 16596 chr19 55396889 55396889 1 + G T COAD 55396890 + 55396870 55396910 41 TCAGTGCCAATATAGGATAGGGCACTACAGATTCCGGTACA TCAGTGCCAATATAGGATATGGCACTACAGATTCCGGTACA < 41bp 0.474017213283072 0.773817555554638 NA NA prediction 0.547635111109277 Functional Gain - FCAR ENSG00000186431 CDS Human protein_coding chr19:55396890 chr19:55396889 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_17541 0 0 0 0 1 FCAR chr19:55396937 5'GT 55396937 Upstream 49bp 16597 chr11 73101965 73101965 1 + G T HNSC 73101966 + 73101946 73101986 41 CTGTGGAGACTGCTGGCCTGGGTAAGCCAAAGGGAGTGCGG CTGTGGAGACTGCTGGCCTTGGTAAGCCAAAGGGAGTGCGG < 41bp 0.596388078803751 0.870193947221688 NA NA prediction 0.547611736835873 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73101966 chr11:73101965 nonsynonymous SNV 0.888 5 20 hm7G_associated_SNPs_17543 0 0 1 0 1 RELT chr11:73101966 5'GT 73101966 Upstream 2bp 16598 chr17 4057996 4057996 1 + G T UCEC 4057997 + 4057977 4058017 41 CAGGACGGTTCTACGGAGAGGATGGGCTGCCCACCCCGGCA CAGGACGGTTCTACGGAGATGATGGGCTGCCCACCCCGGCA < 41bp 0.587878195291511 0.861668303377877 NA NA prediction 0.547580216172733 Functional Gain - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4057997 chr17:4057996 nonsynonymous SNV 0.240 1 20 hm7G_associated_SNPs_17545 0 0 1 0 1 CYB5D2 chr17:4057968 3'AG 4057968 Downstream 29bp 16599 chr8 27308400 27308400 1 + G T ESCA 27308401 + 27308381 27308421 41 ACCAGTGGCTCAGGCAGGAGGAGAAGTCCCTGGTGAGCACC ACCAGTGGCTCAGGCAGGATGAGAAGTCCCTGGTGAGCACC < 41bp 0.437525326722568 0.773784652165085 NA NA prediction 0.54756930433017 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27308401 chr8:27308400 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_17547 0 0 1 0 1 PTK2B chr8:27308412 5'GT 27308412 Upstream 13bp 16600 chr10 89473929 89473929 1 + G T UCEC 89473930 + 89473910 89473950 41 ATAAAAGGGCCAGAGCTGGGGAGATTAAAGGTAAGAGAATT ATAAAAGGGCCAGAGCTGGTGAGATTAAAGGTAAGAGAATT < 41bp 0.455205898087611 0.773781398458853 NA NA prediction 0.547562796917706 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89473930 chr10:89473929 synonymous SNV . 0 20 hm7G_associated_SNPs_17548 0 0 0 3 1 PAPSS2 chr10:89473939 5'GT 89473939 Upstream 11bp 16601 chr1 2493124 2493124 1 + G T LIHC 2493125 + 2493105 2493145 41 CCCGCAGGTGCAGCTGGCTGGTGACGAAGGCCGGAGCTGGG CCCGCAGGTGCAGCTGGCTTGTGACGAAGGCCGGAGCTGGG < 41bp 0.473076002116464 0.77377280350225 NA NA prediction 0.5475456070045 Functional Gain - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2493125 chr1:2493124 synonymous SNV . 0 20 hm7G_associated_SNPs_17549 0 0 1 0 1 TNFRSF14 chr1:2493112 3'AG 2493112 Downstream 13bp 16602 chr3 32483363 32483363 1 + G T OV 32483364 + 32483344 32483384 41 ATTGCCTTCATCTGTGTGCGGAGCTCCCTGTGGACCAACTA ATTGCCTTCATCTGTGTGCTGAGCTCCCTGTGGACCAACTA < 41bp 0.585820416854015 0.859577328455918 NA NA prediction 0.547513823203805 Functional Gain - CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32483364 chr3:32483363 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_17551 0 0 1 0 1 CMTM7 chr3:32483332 3'AG 32483332 Downstream 32bp 16603 chr17 7290430 7290430 1 + G T TGCT 7290431 + 7290411 7290451 41 CACCCGTCCAGTCCACAGAGGCACCCCTGCCCGGGGAGATC CACCCGTCCAGTCCACAGATGCACCCCTGCCCGGGGAGATC < 41bp 0.435778325390904 0.773752882108158 NA NA prediction 0.547505764216317 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290431 chr17:7290430 nonsynonymous SNV 0.790 0 20 hm7G_associated_SNPs_17552 0 0 0 0 1 TNK1 chr17:7290473 5'GT 7290473 Upstream 44bp 16604 chr2 203139876 203139876 1 + G T STAD 203139877 + 203139857 203139897 41 CAAGAGGTTGATAGTTTATGGAAAGAATTTGAAACTCCAGA CAAGAGGTTGATAGTTTATTGAAAGAATTTGAAACTCCAGA < 41bp 0.472686797668465 0.77374036914952 NA NA prediction 0.547480738299039 Functional Gain - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203139877 chr2:203139876 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_17554 0 0 1 0 2 NOP58 chr2:203139836 3'AG 203139836 Downstream 41bp 16605 chr2 203139876 203139876 1 + G T STAD 203139877 + 203139857 203139897 41 CAAGAGGTTGATAGTTTATGGAAAGAATTTGAAACTCCAGA CAAGAGGTTGATAGTTTATTGAAAGAATTTGAAACTCCAGA < 41bp 0.472686797668465 0.77374036914952 NA NA prediction 0.547480738299039 Functional Gain - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203139877 chr2:203139876 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_17554 0 0 1 0 2 NOP58 chr2:203139912 5'GT 203139912 Upstream 37bp 16606 chr17 36861936 36861936 1 + G T UCEC 36861937 + 36861917 36861957 41 GTTCGGACGAGAGGGGCTGGGCCGAGAACCCGCTGGTCTAC GTTCGGACGAGAGGGGCTGTGCCGAGAACCCGCTGGTCTAC < 41bp 0.570177237678355 0.843916272674416 NA NA prediction 0.547478069992123 Functional Gain - MLLT6 ENSG00000108292 CDS Human other chr17:36861937 chr17:36861936 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17556 0 0 1 0 1 MLLT6 chr17:36861994 5'GT 36861994 Upstream 59bp 16607 chr1 179870504 179870504 1 + G T LUAD 179870505 + 179870485 179870525 41 CTGTTAAGGCCAGATCCAGGGATTCTGATGAATCTGGAGGT CTGTTAAGGCCAGATCCAGTGATTCTGATGAATCTGGAGGT < 41bp 0.454335993988713 0.773729959473618 NA NA prediction 0.547459918947237 Functional Gain - TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179870505 chr1:179870504 nonsynonymous SNV 0.372 0 20 hm7G_associated_SNPs_17558 0 0 1 0 2 TOR1AIP1 chr1:179870437 3'AG 179870437 Downstream 68bp 16608 chr1 179870504 179870504 1 + G T LUAD 179870505 + 179870485 179870525 41 CTGTTAAGGCCAGATCCAGGGATTCTGATGAATCTGGAGGT CTGTTAAGGCCAGATCCAGTGATTCTGATGAATCTGGAGGT < 41bp 0.454335993988713 0.773729959473618 NA NA prediction 0.547459918947237 Functional Gain - TOR1AIP1 ENSG00000143337 CDS Human protein_coding chr1:179870505 chr1:179870504 nonsynonymous SNV 0.372 0 20 hm7G_associated_SNPs_17558 0 0 1 0 2 TOR1AIP1 chr1:179870523 5'GT 179870523 Upstream 20bp 16609 chr19 11114067 11114067 1 + G T UCS 11114068 + 11114048 11114088 41 AAAGTGGCTCAGAAGAAGAGGAAGAGGTAAGAGTGCATTTC AAAGTGGCTCAGAAGAAGATGAAGAGGTAAGAGTGCATTTC < 41bp 0.461189581391652 0.773726520834841 NA NA prediction 0.547453041669683 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114068 chr19:11114067 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17559 0 0 1 0 2 SMARCA4 chr19:11114016 3'AG 11114016 Downstream 52bp 16610 chr19 11114067 11114067 1 + G T UCS 11114068 + 11114048 11114088 41 AAAGTGGCTCAGAAGAAGAGGAAGAGGTAAGAGTGCATTTC AAAGTGGCTCAGAAGAAGATGAAGAGGTAAGAGTGCATTTC < 41bp 0.461189581391652 0.773726520834841 NA NA prediction 0.547453041669683 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11114068 chr19:11114067 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17559 0 0 1 0 2 SMARCA4 chr19:11114073 5'GT 11114073 Upstream 7bp 16611 chr6 130378584 130378584 1 + G T LUSC 130378585 + 130378565 130378605 41 GGAAAGAAAGCGTGGTGCTGGGCATCCTACCTGGAAGAGGA GGAAAGAAAGCGTGGTGCTTGGCATCCTACCTGGAAGAGGA < 41bp 0.445138853346011 0.773725864204639 NA NA prediction 0.547451728409278 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130378585 chr6:130378584 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_17560 0 0 1 0 2 L3MBTL3 chr6:130378551 3'AG 130378551 Downstream 34bp 16612 chr6 130378584 130378584 1 + G T LUSC 130378585 + 130378565 130378605 41 GGAAAGAAAGCGTGGTGCTGGGCATCCTACCTGGAAGAGGA GGAAAGAAAGCGTGGTGCTTGGCATCCTACCTGGAAGAGGA < 41bp 0.445138853346011 0.773725864204639 NA NA prediction 0.547451728409278 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130378585 chr6:130378584 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_17560 0 0 1 0 2 L3MBTL3 chr6:130378642 5'GT 130378642 Upstream 59bp 16613 chr12 94673341 94673341 1 + G T UCEC 94673342 + 94673322 94673362 41 TCTCGACTGTGACACCATTGGCCAAGCCAAAGAAAAGATTT TCTCGACTGTGACACCATTTGCCAAGCCAAAGAAAAGATTT < 41bp 0.447953920540988 0.773711743492914 NA NA prediction 0.547423486985828 Functional Gain - PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94673342 chr12:94673341 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17562 0 0 0 0 2 PLXNC1 chr12:94673248 3'AG 94673248 Downstream 94bp 16614 chr12 94673341 94673341 1 + G T UCEC 94673342 + 94673322 94673362 41 TCTCGACTGTGACACCATTGGCCAAGCCAAAGAAAAGATTT TCTCGACTGTGACACCATTTGCCAAGCCAAAGAAAAGATTT < 41bp 0.447953920540988 0.773711743492914 NA NA prediction 0.547423486985828 Functional Gain - PLXNC1 ENSG00000136040 CDS Human protein_coding chr12:94673342 chr12:94673341 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17562 0 0 0 0 2 PLXNC1 chr12:94673425 5'GT 94673425 Upstream 85bp 16615 chr3 50312311 50312311 1 + G T UCEC 50312312 + 50312292 50312332 41 AGGTGATCTCGGTCCCCAAGGGCAGTAGGCCCAGCGCAGAG AGGTGATCTCGGTCCCCAATGGCAGTAGGCCCAGCGCAGAG < 41bp 0.431116504057898 0.773710847480464 NA NA prediction 0.547421694960927 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50312312 chr3:50312311 . 0.155 3 20 hm7G_associated_SNPs_17563 0 0 1 0 2 SEMA3B chr3:50312274 3'AG 50312274 Downstream 38bp 16616 chr3 50312311 50312311 1 + G T UCEC 50312312 + 50312292 50312332 41 AGGTGATCTCGGTCCCCAAGGGCAGTAGGCCCAGCGCAGAG AGGTGATCTCGGTCCCCAATGGCAGTAGGCCCAGCGCAGAG < 41bp 0.431116504057898 0.773710847480464 NA NA prediction 0.547421694960927 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50312312 chr3:50312311 . 0.155 3 20 hm7G_associated_SNPs_17563 0 0 1 0 2 SEMA3B chr3:50312365 5'GT 50312365 Upstream 55bp 16617 chr18 76754904 76754904 1 + G T LUAD 76754905 + 76754885 76754925 41 TGTTCCTGAGCAGGGAGCGGGGTAAGTGTCCCAGCACTGTG TGTTCCTGAGCAGGGAGCGTGGTAAGTGTCCCAGCACTGTG < 41bp 0.574228702095547 0.847928998359096 NA NA prediction 0.547400592527098 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76754905 chr18:76754904 synonymous SNV . 0 20 hm7G_associated_SNPs_17564 0 0 0 0 1 SALL3 chr18:76754905 5'GT 76754905 Upstream 2bp 16618 chr2 105696461 105696461 1 + G T GBM 105696462 + 105696442 105696482 41 AATCCAGTGGGGAGAAGATGGCCGTCCATTTCACTATCTCT AATCCAGTGGGGAGAAGATTGCCGTCCATTTCACTATCTCT < 41bp 0.448321382062378 0.773692952327907 NA NA prediction 0.547385904655814 Functional Gain - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105696462 chr2:105696461 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17565 0 0 1 0 2 MRPS9 chr2:105696441 3'AG 105696441 Downstream 21bp 16619 chr2 105696461 105696461 1 + G T GBM 105696462 + 105696442 105696482 41 AATCCAGTGGGGAGAAGATGGCCGTCCATTTCACTATCTCT AATCCAGTGGGGAGAAGATTGCCGTCCATTTCACTATCTCT < 41bp 0.448321382062378 0.773692952327907 NA NA prediction 0.547385904655814 Functional Gain - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105696462 chr2:105696461 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17565 0 0 1 0 2 MRPS9 chr2:105696520 5'GT 105696520 Upstream 60bp 16620 chr10 118314719 118314719 1 + G T LUSC 118314720 + 118314700 118314740 41 AGCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGAT AGCAGAACCTTGCTTTCAGTGCACACCTGAATTAGTCCGAT < 41bp 0.450517696111556 0.773691565198504 NA NA prediction 0.547383130397008 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314720 chr10:118314719 nonsynonymous SNV 0.881 4 20 hm7G_associated_SNPs_17567 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 91bp 16621 chr1 3782284 3782284 1 + G T LUSC 3782285 + 3782265 3782305 41 TTGCCAGGCCCTGGGGAATGGGGGAAGATGTGGTCAGAGGC TTGCCAGGCCCTGGGGAATTGGGGAAGATGTGGTCAGAGGC < 41bp 0.458874228763086 0.773687510797953 NA NA prediction 0.547375021595905 Functional Gain - DFFB ENSG00000169598 CDS Human protein_coding chr1:3782285 chr1:3782284 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_17568 0 0 0 0 1 DFFB chr1:3782207 3'AG 3782207 Downstream 78bp 16622 chr1 118003128 118003128 1 + G T LUAD 118003129 + 118003109 118003149 41 AGTGGAGTAGGGCGAAACTGGGGCTGGGCATCTGCAGGTAG AGTGGAGTAGGGCGAAACTTGGGCTGGGCATCTGCAGGTAG < 41bp 0.447735049955225 0.773687351349139 NA NA prediction 0.547374702698277 Functional Gain - MAN1A2 ENSG00000198162 CDS Human protein_coding chr1:118003129 chr1:118003128 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17569 0 0 1 0 1 MAN1A2 chr1:118003111 3'AG 118003111 Downstream 18bp 16623 chr7 55980359 55980359 1 + G T LUAD 55980360 + 55980340 55980380 41 AGAATGCTGTTTTTTCTCAGGAGGGGAACATGGAGGAGGAA AGAATGCTGTTTTTTCTCATGAGGGGAACATGGAGGAGGAA < 41bp 0.544483312509068 0.818169510879629 NA NA prediction 0.547372396741123 Functional Gain - ZNF713 ENSG00000249773 splicing Human other chr7:55980360 chr7:55980359 . . 0 20 hm7G_associated_SNPs_17570 0 0 1 0 1 ZNF713 chr7:55980416 5'GT 55980416 Upstream 58bp 16624 chr18 31158619 31158619 1 + G T ACC 31158620 + 31158600 31158640 41 AAGACAAGAGGAAGAAGAAGGACCGCACCTGGGCCGAGGCT AAGACAAGAGGAAGAAGAATGACCGCACCTGGGCCGAGGCT < 41bp 0.556602268996498 0.830276151606581 NA NA prediction 0.547347765220166 Functional Gain - ASXL3 ENSG00000141431 CDS Human protein_coding chr18:31158620 chr18:31158619 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17571 0 0 0 0 1 ASXL3 chr18:31158649 5'GT 31158649 Upstream 31bp 16625 chr5 110407659 110407659 1 + G T UCEC 110407660 + 110407640 110407680 41 TTCATCTTACAACTTGTAGGGCTGGTGTTAACTTACGACTT TTCATCTTACAACTTGTAGTGCTGGTGTTAACTTACGACTT < 41bp 0.467941042200263 0.773665956423517 NA NA prediction 0.547331912847035 Functional Gain - TSLP ENSG00000145777 CDS Human protein_coding chr5:110407660 chr5:110407659 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_17572 0 0 0 0 1 TSLP chr5:110407623 3'AG 110407623 Downstream 37bp 16626 chr4 169083688 169083688 1 + G T SARC 169083689 + 169083669 169083709 41 TCCTCCACAGGACCTGATTGGGGATATGAGGGAGCAGCTTT TCCTCCACAGGACCTGATTTGGGATATGAGGGAGCAGCTTT < 41bp 0.562564417468382 0.836218118857052 NA NA prediction 0.54730740277734 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169083689 chr4:169083688 nonsynonymous SNV 0.467 1 20 hm7G_associated_SNPs_17574 0 0 0 0 1 ANXA10 chr4:169083679 3'AG 169083679 Downstream 10bp 16627 chr12 121437306 121437306 1 + G T UCEC 121437307 + 121437287 121437327 41 TCTTCACCTCAGACACTGAGGCCTCCAGTGAGTCCGGGCTT TCTTCACCTCAGACACTGATGCCTCCAGTGAGTCCGGGCTT < 41bp 0.58892525627793 0.862574254327286 NA NA prediction 0.547297996098712 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437307 chr12:121437306 nonsynonymous SNV 0.937 1 20 hm7G_associated_SNPs_17575 0 0 0 0 2 HNF1A chr12:121437265 3'AG 121437265 Downstream 42bp 16628 chr12 121437306 121437306 1 + G T UCEC 121437307 + 121437287 121437327 41 TCTTCACCTCAGACACTGAGGCCTCCAGTGAGTCCGGGCTT TCTTCACCTCAGACACTGATGCCTCCAGTGAGTCCGGGCTT < 41bp 0.58892525627793 0.862574254327286 NA NA prediction 0.547297996098712 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437307 chr12:121437306 nonsynonymous SNV 0.937 1 20 hm7G_associated_SNPs_17575 0 0 0 0 2 HNF1A chr12:121437286 3'AG 121437286 Downstream 21bp 16629 chr20 17437058 17437058 1 + G T LUAD 17437059 + 17437039 17437079 41 CATCTGCAGCTGCCCCCGAGGCAGCTGGTGTGTTTGCACTG CATCTGCAGCTGCCCCCGATGCAGCTGGTGTGTTTGCACTG < 41bp 0.438255554215772 0.773642672865079 NA NA prediction 0.547285345730157 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17437059 chr20:17437058 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_17576 0 0 0 0 2 PCSK2 chr20:17436993 3'AG 17436993 Downstream 66bp 16630 chr20 17437058 17437058 1 + G T LUAD 17437059 + 17437039 17437079 41 CATCTGCAGCTGCCCCCGAGGCAGCTGGTGTGTTTGCACTG CATCTGCAGCTGCCCCCGATGCAGCTGGTGTGTTTGCACTG < 41bp 0.438255554215772 0.773642672865079 NA NA prediction 0.547285345730157 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17437059 chr20:17437058 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_17576 0 0 0 0 2 PCSK2 chr20:17437093 5'GT 17437093 Upstream 36bp 16631 chr2 27320391 27320391 1 + G T KIRC 27320392 + 27320372 27320412 41 GCCGGAACGCATCGGAGCAGGTGAAGATGCTGCAGCGGATA GCCGGAACGCATCGGAGCATGTGAAGATGCTGCAGCGGATA < 41bp 0.581218024259757 0.854856292038368 NA NA prediction 0.547276535557221 Functional Gain - KHK ENSG00000138030 CDS Human protein_coding chr2:27320392 chr2:27320391 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_17577 0 0 1 0 1 KHK chr2:27320371 3'AG 27320371 Downstream 21bp 16632 chr19 35741545 35741545 1 + G T UCEC 35741546 + 35741526 35741566 41 GATTACTACCAGGGCCGGAGGATTACCATCACCGGAAGTAT GATTACTACCAGGGCCGGATGATTACCATCACCGGAAGTAT < 41bp 0.587734286631559 0.86136691479189 NA NA prediction 0.547265256320662 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35741546 chr19:35741545 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_17578 0 0 1 0 1 LSR chr19:35741562 5'GT 35741562 Upstream 18bp 16633 chr5 109181688 109181688 1 + G T UCEC 109181689 + 109181669 109181709 41 TCTCTGCTCAGTCATTAGGGGTTTCGAGTTTGAATAGTGGT TCTCTGCTCAGTCATTAGGTGTTTCGAGTTTGAATAGTGGT < 41bp 0.464743540898706 0.773628420241147 NA NA prediction 0.547256840482293 Functional Gain - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109181689 chr5:109181688 synonymous SNV . 0 20 hm7G_associated_SNPs_17579 0 0 0 0 1 MAN2A1 chr5:109181707 5'GT 109181707 Upstream 20bp 16634 chr17 25931751 25931751 1 + G T ESCA 25931752 + 25931732 25931772 41 TGTTGGAAGCTCACGAAGCGGAGGTGAGGGTGACACACACG TGTTGGAAGCTCACGAAGCTGAGGTGAGGGTGACACACACG < 41bp 0.444274128674713 0.773625582600385 NA NA prediction 0.54725116520077 Functional Gain - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25931752 chr17:25931751 synonymous SNV . 0 20 hm7G_associated_SNPs_17580 0 0 1 0 2 KSR1 chr17:25931706 3'AG 25931706 Downstream 46bp 16635 chr17 25931751 25931751 1 + G T ESCA 25931752 + 25931732 25931772 41 TGTTGGAAGCTCACGAAGCGGAGGTGAGGGTGACACACACG TGTTGGAAGCTCACGAAGCTGAGGTGAGGGTGACACACACG < 41bp 0.444274128674713 0.773625582600385 NA NA prediction 0.54725116520077 Functional Gain - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25931752 chr17:25931751 synonymous SNV . 0 20 hm7G_associated_SNPs_17580 0 0 1 0 2 KSR1 chr17:25931754 5'GT 25931754 Upstream 4bp 16636 chr1 206905225 206905225 1 + G T SKCM 206905226 + 206905206 206905246 41 CCCCACTGCACACCAGCCGGGTCCTGAAGGAGGACAAGGAG CCCCACTGCACACCAGCCGTGTCCTGAAGGAGGACAAGGAG < 41bp 0.581571315797799 0.855192525133089 NA NA prediction 0.54724241867058 Functional Gain - MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206905226 chr1:206905225 synonymous SNV . 0 20 hm7G_associated_SNPs_17581 0 0 1 0 2 MAPKAPK2 chr1:206905184 3'AG 206905184 Downstream 42bp 16637 chr1 206905225 206905225 1 + G T SKCM 206905226 + 206905206 206905246 41 CCCCACTGCACACCAGCCGGGTCCTGAAGGAGGACAAGGAG CCCCACTGCACACCAGCCGTGTCCTGAAGGAGGACAAGGAG < 41bp 0.581571315797799 0.855192525133089 NA NA prediction 0.54724241867058 Functional Gain - MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206905226 chr1:206905225 synonymous SNV . 0 20 hm7G_associated_SNPs_17581 0 0 1 0 2 MAPKAPK2 chr1:206905264 5'GT 206905264 Upstream 40bp 16638 chr2 233399031 233399031 1 + G T GBM 233399032 + 233399012 233399052 41 TCATTGTTAACCACATGAGGGACCAGAACAATTACAATGAG TCATTGTTAACCACATGAGTGACCAGAACAATTACAATGAG < 41bp 0.572694985588159 0.846297438873893 NA NA prediction 0.547204906571468 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233399032 chr2:233399031 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_17584 0 0 0 0 2 CHRND chr2:233398934 3'AG 233398934 Downstream 98bp 16639 chr2 233399031 233399031 1 + G T GBM 233399032 + 233399012 233399052 41 TCATTGTTAACCACATGAGGGACCAGAACAATTACAATGAG TCATTGTTAACCACATGAGTGACCAGAACAATTACAATGAG < 41bp 0.572694985588159 0.846297438873893 NA NA prediction 0.547204906571468 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233399032 chr2:233399031 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_17584 0 0 0 0 2 CHRND chr2:233399052 5'GT 233399052 Upstream 22bp 16640 chr18 39623730 39623730 1 + G T LUAD 39623731 + 39623711 39623751 41 ATATGCACCAAGTGAGAATGGGCCAAATGGGATTAGTGCTG ATATGCACCAAGTGAGAATTGGCCAAATGGGATTAGTGCTG < 41bp 0.45204219999411 0.773601705611211 NA NA prediction 0.547203411222422 Functional Gain - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39623731 chr18:39623730 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_17585 0 0 1 0 2 PIK3C3 chr18:39623697 3'AG 39623697 Downstream 34bp 16641 chr18 39623730 39623730 1 + G T LUAD 39623731 + 39623711 39623751 41 ATATGCACCAAGTGAGAATGGGCCAAATGGGATTAGTGCTG ATATGCACCAAGTGAGAATTGGCCAAATGGGATTAGTGCTG < 41bp 0.45204219999411 0.773601705611211 NA NA prediction 0.547203411222422 Functional Gain - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39623731 chr18:39623730 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_17585 0 0 1 0 2 PIK3C3 chr18:39623781 5'GT 39623781 Upstream 52bp 16642 chr2 27840351 27840351 1 + G T LUAD 27840352 + 27840332 27840372 41 GGAAATAGGGAAACTTTGTGGCTGGAAAATACAAATGTCTT GGAAATAGGGAAACTTTGTTGCTGGAAAATACAAATGTCTT < 41bp 0.556805254066698 0.830396206736856 NA NA prediction 0.547181905340316 Functional Gain - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27840352 chr2:27840351 synonymous SNV . 0 20 hm7G_associated_SNPs_17586 0 0 1 0 2 ZNF512 chr2:27840340 3'AG 27840340 Downstream 12bp 16643 chr2 27840351 27840351 1 + G T LUAD 27840352 + 27840332 27840372 41 GGAAATAGGGAAACTTTGTGGCTGGAAAATACAAATGTCTT GGAAATAGGGAAACTTTGTTGCTGGAAAATACAAATGTCTT < 41bp 0.556805254066698 0.830396206736856 NA NA prediction 0.547181905340316 Functional Gain - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27840352 chr2:27840351 synonymous SNV . 0 20 hm7G_associated_SNPs_17586 0 0 1 0 2 ZNF512 chr2:27840438 5'GT 27840438 Upstream 88bp 16644 chr11 6281294 6281294 1 + G T COAD 6281295 + 6281275 6281315 41 CGAGCCCCCTCGCATTCGCGGAGCCGGGACACGAGGTGGGT CGAGCCCCCTCGCATTCGCTGAGCCGGGACACGAGGTGGGT < 41bp 0.577585610399214 0.851168237146433 NA NA prediction 0.547165253494438 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6281295 chr11:6281294 stopgain 0.992 0 20 hm7G_associated_SNPs_17587 0 0 0 0 1 CCKBR chr11:6281309 5'GT 6281309 Upstream 16bp 16645 chr6 132067981 132067981 1 + G T LUAD 132067982 + 132067962 132068002 41 TTTACAGCTCACATTGCCCGGGTCCGTGATGTAGAACTTCT TTTACAGCTCACATTGCCCTGGTCCGTGATGTAGAACTTCT < 41bp 0.562268355930825 0.835836334521708 NA NA prediction 0.547135957181767 Functional Gain - ENPP3 ENSG00000154269 CDS Human protein_coding chr6:132067982 chr6:132067981 nonsynonymous SNV 0.230 4 20 hm7G_associated_SNPs_17588 0 0 1 0 1 ENPP3 chr6:132067926 3'AG 132067926 Downstream 56bp 16646 chr22 32464012 32464012 1 + G T LUAD 32464013 + 32463993 32464033 41 CCCATCTATATTAAGGCTGGGGTAAGTATCTGCTCTGTTAT CCCATCTATATTAAGGCTGTGGTAAGTATCTGCTCTGTTAT < 41bp 0.461153399362675 0.773560485154939 NA NA prediction 0.547120970309879 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32464013 chr22:32464012 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17590 0 0 0 0 2 SLC5A1 chr22:32463954 3'AG 32463954 Downstream 59bp 16647 chr22 32464012 32464012 1 + G T LUAD 32464013 + 32463993 32464033 41 CCCATCTATATTAAGGCTGGGGTAAGTATCTGCTCTGTTAT CCCATCTATATTAAGGCTGTGGTAAGTATCTGCTCTGTTAT < 41bp 0.461153399362675 0.773560485154939 NA NA prediction 0.547120970309879 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32464013 chr22:32464012 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17590 0 0 0 0 2 SLC5A1 chr22:32464013 5'GT 32464013 Upstream 2bp 16648 chr10 94366042 94366042 1 + G T SKCM 94366043 + 94366023 94366063 41 CCATTTAATTTGGCAGAGCGGAAAGCTAGCGCCCATTCAAT CCATTTAATTTGGCAGAGCTGAAAGCTAGCGCCCATTCAAT < 41bp 0.550138794517052 0.823698500413603 NA NA prediction 0.547119411793102 Functional Gain - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94366043 chr10:94366042 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_17591 0 0 1 0 1 KIF11 chr10:94366022 3'AG 94366022 Downstream 21bp 16649 chr5 55063742 55063742 1 + G T ACC 55063743 + 55063723 55063763 41 TGCGAAGATAATCCAACACGGAACAGAGGGTTTTCCAAGAG TGCGAAGATAATCCAACACTGAACAGAGGGTTTTCCAAGAG < 41bp 0.542562365714197 0.81612076739279 NA NA prediction 0.547116803357185 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55063743 chr5:55063742 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_17592 0 0 0 0 1 DDX4 chr5:55063768 5'GT 55063768 Upstream 27bp 16650 chr13 113976601 113976601 1 + G T PRAD 113976602 + 113976582 113976622 41 CGTCTGTCTTGGCAGTGGAGGAGTGTCTGCTGGACGAGAAC CGTCTGTCTTGGCAGTGGATGAGTGTCTGCTGGACGAGAAC < 41bp 0.564273093544102 0.837823432305264 NA NA prediction 0.547100677522324 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113976602 chr13:113976601 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_17593 0 0 1 0 1 LAMP1 chr13:113976597 3'AG 113976597 Downstream 5bp 16651 chr17 7707688 7707688 1 + G T STAD 7707689 + 7707669 7707709 41 TGATGTCGTTGGAGCTGGAGGATGCCAAGAAGAAGGTGGCT TGATGTCGTTGGAGCTGGATGATGCCAAGAAGAAGGTGGCT < 41bp 0.480738442508034 0.77354836579653 NA NA prediction 0.547096731593061 Functional Gain - DNAH2 ENSG00000183914 CDS Human protein_coding chr17:7707689 chr17:7707688 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_17594 0 0 0 0 1 DNAH2 chr17:7707784 5'GT 7707784 Upstream 97bp 16652 chr11 36669699 36669699 1 + G T THCA 36669700 + 36669680 36669720 41 AAAGAATGGACAAACAGACGGAAGAGGTACTCCACAGGGAA AAAGAATGGACAAACAGACTGAAGAGGTACTCCACAGGGAA < 41bp 0.556188954615614 0.829710328236559 NA NA prediction 0.54704274724189 Functional Gain - C11orf74 ENSG00000166352 CDS Human protein_coding chr11:36669700 chr11:36669699 synonymous SNV . 0 20 hm7G_associated_SNPs_17598 0 0 1 0 1 C11orf74 chr11:36669705 5'GT 36669705 Upstream 7bp 16653 chr10 13656047 13656047 1 + G T UCEC 13656048 + 13656028 13656068 41 ATATTAAAGAATCAATAACGGATATTATTAAATTCATGTTG ATATTAAAGAATCAATAACTGATATTATTAAATTCATGTTG < 41bp 0.47985619193714 0.773513814912194 NA NA prediction 0.547027629824389 Functional Gain - PRPF18 ENSG00000165630;ENSG00000239665 CDS Human other chr10:13656048 chr10:13656047 synonymous SNV . 0 20 hm7G_associated_SNPs_17599 0 0 1 0 2 PRPF18 chr10:13656015 3'AG 13656015 Downstream 33bp 16654 chr10 13656047 13656047 1 + G T UCEC 13656048 + 13656028 13656068 41 ATATTAAAGAATCAATAACGGATATTATTAAATTCATGTTG ATATTAAAGAATCAATAACTGATATTATTAAATTCATGTTG < 41bp 0.47985619193714 0.773513814912194 NA NA prediction 0.547027629824389 Functional Gain - PRPF18 ENSG00000165630;ENSG00000239665 CDS Human other chr10:13656048 chr10:13656047 synonymous SNV . 0 20 hm7G_associated_SNPs_17599 0 0 1 0 2 PRPF18 chr10:13656086 5'GT 13656086 Upstream 40bp 16655 chr5 172560710 172560710 1 + G T UCEC 172560711 + 172560691 172560731 41 AGAAGGGAATCCCACTGGAGGCCTTGTAGGATTAAGGATAC AGAAGGGAATCCCACTGGATGCCTTGTAGGATTAAGGATAC < 41bp 0.482251663735913 0.773513061740737 NA NA prediction 0.547026123481474 Functional Gain - CREBRF ENSG00000164463 CDS Human protein_coding chr5:172560711 chr5:172560710 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17600 0 0 1 0 1 CREBRF chr5:172560633 3'AG 172560633 Downstream 78bp 16656 chr6 18208398 18208398 1 + G T SARC 18208399 + 18208379 18208419 41 ATTCTGGAGATGAAGTGCAGGTTACCACTACAGATGGCACA ATTCTGGAGATGAAGTGCATGTTACCACTACAGATGGCACA < 41bp 0.570502333209201 0.844005220490397 NA NA prediction 0.547005774562391 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18208399 chr6:18208398 nonsynonymous SNV 0.957 2 20 hm7G_associated_SNPs_17603 0 0 0 0 2 KDM1B chr6:18208363 3'AG 18208363 Downstream 36bp 16657 chr6 18208398 18208398 1 + G T SARC 18208399 + 18208379 18208419 41 ATTCTGGAGATGAAGTGCAGGTTACCACTACAGATGGCACA ATTCTGGAGATGAAGTGCATGTTACCACTACAGATGGCACA < 41bp 0.570502333209201 0.844005220490397 NA NA prediction 0.547005774562391 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18208399 chr6:18208398 nonsynonymous SNV 0.957 2 20 hm7G_associated_SNPs_17603 0 0 0 0 2 KDM1B chr6:18208437 5'GT 18208437 Upstream 40bp 16658 chr1 22927255 22927255 1 + G T HNSC 22927256 + 22927236 22927276 41 TCGGCGTGGTCATGTGGGAGGTGCTGGCCTATGGGGAGCGG TCGGCGTGGTCATGTGGGATGTGCTGGCCTATGGGGAGCGG < 41bp 0.575127265680541 0.848630151647085 NA NA prediction 0.547005771933088 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927256 chr1:22927255 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_17604 0 0 0 0 1 EPHA8 chr1:22927303 5'GT 22927303 Upstream 49bp 16659 chr1 57347210 57347210 1 + G T LUAD 57347211 + 57347191 57347231 41 GTATACAATGGGGAATGGAGGGAGCTTCGATATGACTCCAC GTATACAATGGGGAATGGATGGAGCTTCGATATGACTCCAC < 41bp 0.579499018650389 0.852981979667352 NA NA prediction 0.546965922033926 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57347211 chr1:57347210 nonsynonymous SNV 0.767 4 20 hm7G_associated_SNPs_17605 0 0 1 0 2 C8A chr1:57347118 3'AG 57347118 Downstream 93bp 16660 chr1 57347210 57347210 1 + G T LUAD 57347211 + 57347191 57347231 41 GTATACAATGGGGAATGGAGGGAGCTTCGATATGACTCCAC GTATACAATGGGGAATGGATGGAGCTTCGATATGACTCCAC < 41bp 0.579499018650389 0.852981979667352 NA NA prediction 0.546965922033926 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57347211 chr1:57347210 nonsynonymous SNV 0.767 4 20 hm7G_associated_SNPs_17605 0 0 1 0 2 C8A chr1:57347307 5'GT 57347307 Upstream 98bp 16661 chr16 50756610 50756610 1 + G T LUSC 50756611 + 50756591 50756631 41 GATCACCAGAGCTTGAGGTGGCTCAGGTAAGCTTCAGAGTC GATCACCAGAGCTTGAGGTTGCTCAGGTAAGCTTCAGAGTC < 41bp 0.56209213172083 0.835572935845637 NA NA prediction 0.546961608249613 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50756611 chr16:50756610 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17606 0 0 0 0 2 NOD2 chr16:50756533 3'AG 50756533 Downstream 78bp 16662 chr16 50756610 50756610 1 + G T LUSC 50756611 + 50756591 50756631 41 GATCACCAGAGCTTGAGGTGGCTCAGGTAAGCTTCAGAGTC GATCACCAGAGCTTGAGGTTGCTCAGGTAAGCTTCAGAGTC < 41bp 0.56209213172083 0.835572935845637 NA NA prediction 0.546961608249613 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50756611 chr16:50756610 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17606 0 0 0 0 2 NOD2 chr16:50756616 5'GT 50756616 Upstream 7bp 16663 chr1 36367869 36367869 1 + G T OV 36367870 + 36367850 36367890 41 GGGAAACAGTTCTACAATGGGATTGAGATCAAAGTCTGGGC GGGAAACAGTTCTACAATGTGATTGAGATCAAAGTCTGGGC < 41bp 0.44902514683662 0.773474557538869 NA NA prediction 0.546949115077738 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36367870 chr1:36367869 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17607 0 0 1 0 2 AGO1 chr1:36367805 3'AG 36367805 Downstream 65bp 16664 chr1 36367869 36367869 1 + G T OV 36367870 + 36367850 36367890 41 GGGAAACAGTTCTACAATGGGATTGAGATCAAAGTCTGGGC GGGAAACAGTTCTACAATGTGATTGAGATCAAAGTCTGGGC < 41bp 0.44902514683662 0.773474557538869 NA NA prediction 0.546949115077738 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36367870 chr1:36367869 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17607 0 0 1 0 2 AGO1 chr1:36367938 5'GT 36367938 Upstream 70bp 16665 chr4 184605474 184605474 1 + G T UCEC 184605475 + 184605455 184605495 41 TAGTGGTTCAGATGGGAGAGGAATATTATTACGCAAAGGAT TAGTGGTTCAGATGGGAGATGAATATTATTACGCAAAGGAT < 41bp 0.556363839918937 0.829832657808022 NA NA prediction 0.54693763577817 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184605475 chr4:184605474 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_17609 0 0 0 0 2 TRAPPC11 chr4:184605458 3'AG 184605458 Downstream 17bp 16666 chr4 184605474 184605474 1 + G T UCEC 184605475 + 184605455 184605495 41 TAGTGGTTCAGATGGGAGAGGAATATTATTACGCAAAGGAT TAGTGGTTCAGATGGGAGATGAATATTATTACGCAAAGGAT < 41bp 0.556363839918937 0.829832657808022 NA NA prediction 0.54693763577817 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184605475 chr4:184605474 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_17609 0 0 0 0 2 TRAPPC11 chr4:184605512 5'GT 184605512 Upstream 39bp 16667 chr18 29104672 29104672 1 + G T COAD 29104673 + 29104653 29104693 41 TCATGTTTTGCAGCTTGAAGGGATGGTTGAAGAAAATCAAG TCATGTTTTGCAGCTTGAATGGATGGTTGAAGAAAATCAAG < 41bp 0.550121625565409 0.823579526312355 NA NA prediction 0.54691580149389 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29104673 chr18:29104672 nonsynonymous SNV 0.165 3 20 hm7G_associated_SNPs_17612 0 0 1 0 1 DSG2 chr18:29104666 3'AG 29104666 Downstream 7bp 16668 chr11 7437358 7437358 1 + G T UCEC 7437359 + 7437339 7437379 41 ATTACCATTATAAAAGCAAGGAATTTAAAGGCAATGGACAT ATTACCATTATAAAAGCAATGAATTTAAAGGCAATGGACAT < 41bp 0.569687817505843 0.843144011065392 NA NA prediction 0.546912387119099 Functional Gain - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7437359 chr11:7437358 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17613 0 0 0 0 2 SYT9 chr11:7437273 3'AG 7437273 Downstream 86bp 16669 chr11 7437358 7437358 1 + G T UCEC 7437359 + 7437339 7437379 41 ATTACCATTATAAAAGCAAGGAATTTAAAGGCAATGGACAT ATTACCATTATAAAAGCAATGAATTTAAAGGCAATGGACAT < 41bp 0.569687817505843 0.843144011065392 NA NA prediction 0.546912387119099 Functional Gain - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7437359 chr11:7437358 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17613 0 0 0 0 2 SYT9 chr11:7437393 5'GT 7437393 Upstream 36bp 16670 chr14 100792133 100792133 1 + G T LUAD 100792134 + 100792114 100792154 41 TTTCCTTGCAGGCGTCTGCGGTGTTGCTGTGGGCTACCCCC TTTCCTTGCAGGCGTCTGCTGTGTTGCTGTGGGCTACCCCC < 41bp 0.459859464208358 0.773455353922509 NA NA prediction 0.546910707845017 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100792134 chr14:100792133 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_17614 0 0 0 0 2 SLC25A47 chr14:100792125 3'AG 100792125 Downstream 9bp 16671 chr14 100792133 100792133 1 + G T LUAD 100792134 + 100792114 100792154 41 TTTCCTTGCAGGCGTCTGCGGTGTTGCTGTGGGCTACCCCC TTTCCTTGCAGGCGTCTGCTGTGTTGCTGTGGGCTACCCCC < 41bp 0.459859464208358 0.773455353922509 NA NA prediction 0.546910707845017 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100792134 chr14:100792133 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_17614 0 0 0 0 2 SLC25A47 chr14:100792168 5'GT 100792168 Upstream 36bp 16672 chr7 86991129 86991129 1 + G T GBM 86991130 + 86991110 86991150 41 TTCTACCTGCAAGGTTCCAGGAATTACTAGAGACTCCATTA TTCTACCTGCAAGGTTCCATGAATTACTAGAGACTCCATTA < 41bp 0.462592587130527 0.773440906206087 NA NA prediction 0.546881812412174 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:86991130 chr7:86991129 stopgain 1.000 1 20 hm7G_associated_SNPs_17618 0 0 0 0 2 CROT chr7:86991044 3'AG 86991044 Downstream 86bp 16673 chr7 86991129 86991129 1 + G T GBM 86991130 + 86991110 86991150 41 TTCTACCTGCAAGGTTCCAGGAATTACTAGAGACTCCATTA TTCTACCTGCAAGGTTCCATGAATTACTAGAGACTCCATTA < 41bp 0.462592587130527 0.773440906206087 NA NA prediction 0.546881812412174 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:86991130 chr7:86991129 stopgain 1.000 1 20 hm7G_associated_SNPs_17618 0 0 0 0 2 CROT chr7:86991168 5'GT 86991168 Upstream 40bp 16674 chr11 113860191 113860191 1 + G T LGG 113860192 + 113860172 113860212 41 CTGCCCTTCTTCCAGCCATGGGAAACCACTGCAGCCACATG CTGCCCTTCTTCCAGCCATTGGAAACCACTGCAGCCACATG < 41bp 0.456831541319642 0.773439267371726 NA NA prediction 0.546878534743452 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113860192 chr11:113860191 nonsynonymous SNV 0.856 0 20 hm7G_associated_SNPs_17619 0 0 0 0 1 HTR3A chr11:113860187 3'AG 113860187 Downstream 5bp 16675 chr11 128638058 128638058 1 + G T LUAD 128638059 + 128638039 128638079 41 GCAAATGCAGCAAGCTGGTGGGCGGAGGCGAGTCCAACCCC GCAAATGCAGCAAGCTGGTTGGCGGAGGCGAGTCCAACCCC < 41bp 0.591401232644449 0.864834869392687 NA NA prediction 0.546867273496476 Functional Gain - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128638059 chr11:128638058 synonymous SNV . 0 20 hm7G_associated_SNPs_17620 0 0 0 0 1 FLI1 chr11:128638013 3'AG 128638013 Downstream 46bp 16676 chr12 123307921 123307921 1 + G T UCEC 123307922 + 123307902 123307942 41 TTGTTTTCTAGAAGTCAGAGGTCCCAGAAGAGTCAGCTCAA TTGTTTTCTAGAAGTCAGATGTCCCAGAAGAGTCAGCTCAA < 41bp 0.528622021940402 0.802055532645219 NA NA prediction 0.546867021409634 Functional Gain - CCDC62 ENSG00000130783 CDS Human protein_coding chr12:123307922 chr12:123307921 nonsynonymous SNV 0.966 0 20 hm7G_associated_SNPs_17621 0 0 0 0 2 CCDC62 chr12:123307913 3'AG 123307913 Downstream 9bp 16677 chr12 123307921 123307921 1 + G T UCEC 123307922 + 123307902 123307942 41 TTGTTTTCTAGAAGTCAGAGGTCCCAGAAGAGTCAGCTCAA TTGTTTTCTAGAAGTCAGATGTCCCAGAAGAGTCAGCTCAA < 41bp 0.528622021940402 0.802055532645219 NA NA prediction 0.546867021409634 Functional Gain - CCDC62 ENSG00000130783 CDS Human protein_coding chr12:123307922 chr12:123307921 nonsynonymous SNV 0.966 0 20 hm7G_associated_SNPs_17621 0 0 0 0 2 CCDC62 chr12:123308006 5'GT 123308006 Upstream 86bp 16678 chr3 193855566 193855566 1 + G T CESC 193855567 + 193855547 193855587 41 GCTTCCTGTCCACGTGCGAGGGCGTTAATACCGAGGTGCGC GCTTCCTGTCCACGTGCGATGGCGTTAATACCGAGGTGCGC < 41bp 0.57662533260577 0.850033468330271 NA NA prediction 0.546816271449001 Functional Gain - HES1 ENSG00000114315 CDS Human protein_coding chr3:193855567 chr3:193855566 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17625 0 0 1 0 1 HES1 chr3:193855472 3'AG 193855472 Downstream 95bp 16679 chr4 56759794 56759794 1 + G T GBM 56759795 + 56759775 56759815 41 GAACAACCTAATTGCATTAGGAGACAAAATTGATAGCTTTA GAACAACCTAATTGCATTATGAGACAAAATTGATAGCTTTA < 41bp 0.548776138287713 0.822179007274871 NA NA prediction 0.546805737974316 Functional Gain - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56759795 chr4:56759794 stopgain 1.000 1 20 hm7G_associated_SNPs_17626 0 0 1 0 1 EXOC1 chr4:56759718 3'AG 56759718 Downstream 77bp 16680 chr10 65354545 65354545 1 + G T LUAD 65354546 + 65354526 65354566 41 TATTATTTCCAGGTTCGATGGATGATGTACTGGATTGTTTT TATTATTTCCAGGTTCGATTGATGATGTACTGGATTGTTTT < 41bp 0.54393050060534 0.817332392143352 NA NA prediction 0.546803783076025 Functional Gain - REEP3 ENSG00000165476 CDS Human protein_coding chr10:65354546 chr10:65354545 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17627 0 0 1 0 2 REEP3 chr10:65354538 3'AG 65354538 Downstream 8bp 16681 chr10 65354545 65354545 1 + G T LUAD 65354546 + 65354526 65354566 41 TATTATTTCCAGGTTCGATGGATGATGTACTGGATTGTTTT TATTATTTCCAGGTTCGATTGATGATGTACTGGATTGTTTT < 41bp 0.54393050060534 0.817332392143352 NA NA prediction 0.546803783076025 Functional Gain - REEP3 ENSG00000165476 CDS Human protein_coding chr10:65354546 chr10:65354545 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17627 0 0 1 0 2 REEP3 chr10:65354614 5'GT 65354614 Upstream 70bp 16682 chr16 33572067 33572067 1 + G T LIHC 33572068 + 33572048 33572088 41 GACGCCATGGCCCGAGATGGGGTGAAGGCACGCTACATGAC GACGCCATGGCCCGAGATGTGGTGAAGGCACGCTACATGAC < 41bp 0.504829675478372 0.778208823563517 NA NA prediction 0.546758296170291 Functional Gain - ENPP7P13 ENSG00000261580 ncRNA_exonic Human processed_pseudogene chr16:33572068 chr16:33572067 . . 0 20 hm7G_associated_SNPs_17630 0 0 0 0 1 ENPP7P13 chr16:33572138 5'GT 33572138 Upstream 72bp 16683 chr2 28002352 28002352 1 + G T LUSC 28002353 + 28002333 28002373 41 AAATACGCTCCCTTTAAACGGTGGATTGAAAATGACTTTGA AAATACGCTCCCTTTAAACTGTGGATTGAAAATGACTTTGA < 41bp 0.519449821801369 0.792810639662067 NA NA prediction 0.546721635721397 Functional Gain - MRPL33 ENSG00000243147 CDS Human protein_coding chr2:28002353 chr2:28002352 nonsynonymous SNV 0.698 1 20 hm7G_associated_SNPs_17631 0 0 1 0 1 MRPL33 chr2:28002300 3'AG 28002300 Downstream 53bp 16684 chr6 161139802 161139802 1 + G T LUSC 161139803 + 161139783 161139823 41 ACAACCAACAGCCAAGTGCGGTGGGAGTACTGTAAGATACC ACAACCAACAGCCAAGTGCTGTGGGAGTACTGTAAGATACC < 41bp 0.452500203158666 0.77335948856137 NA NA prediction 0.546718977122739 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161139803 chr6:161139802 nonsynonymous SNV 0.850 0 20 hm7G_associated_SNPs_17632 0 0 0 0 2 PLG chr6:161139725 3'AG 161139725 Downstream 78bp 16685 chr6 161139802 161139802 1 + G T LUSC 161139803 + 161139783 161139823 41 ACAACCAACAGCCAAGTGCGGTGGGAGTACTGTAAGATACC ACAACCAACAGCCAAGTGCTGTGGGAGTACTGTAAGATACC < 41bp 0.452500203158666 0.77335948856137 NA NA prediction 0.546718977122739 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161139803 chr6:161139802 nonsynonymous SNV 0.850 0 20 hm7G_associated_SNPs_17632 0 0 0 0 2 PLG chr6:161139870 5'GT 161139870 Upstream 69bp 16686 chr1 11839033 11839033 1 + G T rs55668272 11839034 + 11839014 11839054 41 TCCAGGGGAGCCTTCTGTGGGCAGCTGGGCAGCGGCAGCAG TCCAGGGGAGCCTTCTGTGTGCAGCTGGGCAGCGGCAGCAG < 41bp 0.466726832152699 0.773356289321202 NA NA prediction 0.546712578642404 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11839034 chr1:11839033 nonsynonymous SNV 0.020 2 20 hm7G_associated_SNPs_17633 0 0 0 0 1 C1orf167 chr1:11838983 3'AG 11838983 Downstream 51bp 16687 chr9 4544657 4544657 1 + G T LUAD 4544658 + 4544638 4544678 41 CCTGGAGAAATTCTAATGCGGATGCTGAAACTCATCATTTT CCTGGAGAAATTCTAATGCTGATGCTGAAACTCATCATTTT < 41bp 0.561549918605205 0.834903765883448 NA NA prediction 0.546707694556486 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4544658 chr9:4544657 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17634 0 0 0 0 2 SLC1A1 chr9:4544567 3'AG 4544567 Downstream 91bp 16688 chr9 4544657 4544657 1 + G T LUAD 4544658 + 4544638 4544678 41 CCTGGAGAAATTCTAATGCGGATGCTGAAACTCATCATTTT CCTGGAGAAATTCTAATGCTGATGCTGAAACTCATCATTTT < 41bp 0.561549918605205 0.834903765883448 NA NA prediction 0.546707694556486 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4544658 chr9:4544657 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17634 0 0 0 0 2 SLC1A1 chr9:4544707 5'GT 4544707 Upstream 51bp 16689 chr1 166990921 166990921 1 + G T LUAD 166990922 + 166990902 166990942 41 TAGGTGACTACCCATCTAGGGCAAAAATTTCTGGCCAAAAC TAGGTGACTACCCATCTAGTGCAAAAATTTCTGGCCAAAAC < 41bp 0.468069510266769 0.77335161946056 NA NA prediction 0.54670323892112 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166990922 chr1:166990921 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_17635 0 0 0 1 1 MAEL chr1:166990905 3'AG 166990905 Downstream 17bp 16690 chr10 99504616 99504616 1 + G T UCEC 99504617 + 99504597 99504637 41 ATCATAGCGTGAGGCAGGAGGACCTGCAGAGAGGTCGCCTG ATCATAGCGTGAGGCAGGATGACCTGCAGAGAGGTCGCCTG < 41bp 0.581370794377624 0.854703963776348 NA NA prediction 0.546666338797448 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99504617 chr10:99504616 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_17638 0 0 1 0 1 ZFYVE27 chr10:99504672 5'GT 99504672 Upstream 57bp 16691 chr1 150528653 150528653 1 + G T UCEC 150528654 + 150528634 150528674 41 CCAGAGCCCCGGCTGTGATGGGATCCTTGGCTCTGGCAGGC CCAGAGCCCCGGCTGTGATTGGATCCTTGGCTCTGGCAGGC < 41bp 0.426509238172112 0.773324061638664 NA NA prediction 0.546648123277328 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150528654 chr1:150528653 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17639 0 0 1 0 1 ADAMTSL4 chr1:150528638 3'AG 150528638 Downstream 16bp 16692 chr22 20939424 20939424 1 + G T UCEC 20939425 + 20939405 20939445 41 CCCGGAAGCGCAGGCTTGAGGATGATGAGCGGCAGAGCATC CCCGGAAGCGCAGGCTTGATGATGATGAGCGGCAGAGCATC < 41bp 0.579157634469654 0.852475734243631 NA NA prediction 0.546636199547954 Functional Gain - MED15 ENSG00000099917 CDS Human protein_coding chr22:20939425 chr22:20939424 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_17640 0 0 1 0 1 MED15 chr22:20939388 3'AG 20939388 Downstream 37bp 16693 chrX 70342374 70342374 1 + G T ESCA 70342375 + 70342355 70342395 41 CAGGTCCGTGCAAAGTTGCGGGAGATCGAGCAGCAGATCAA CAGGTCCGTGCAAAGTTGCTGGAGATCGAGCAGCAGATCAA < 41bp 0.442763252266448 0.773305519567291 NA NA prediction 0.546611039134582 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70342375 chrX:70342374 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_17641 0 0 0 0 2 MED12 chrX:70342358 3'AG 70342358 Downstream 17bp 16694 chrX 70342374 70342374 1 + G T ESCA 70342375 + 70342355 70342395 41 CAGGTCCGTGCAAAGTTGCGGGAGATCGAGCAGCAGATCAA CAGGTCCGTGCAAAGTTGCTGGAGATCGAGCAGCAGATCAA < 41bp 0.442763252266448 0.773305519567291 NA NA prediction 0.546611039134582 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70342375 chrX:70342374 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_17641 0 0 0 0 2 MED12 chrX:70342457 5'GT 70342457 Upstream 84bp 16695 chr1 31901854 31901854 1 + G T LGG 31901855 + 31901835 31901875 41 CCAACTCGGGTCTGCTGCAGGCCTCGGTCATCACCCTCTAC CCAACTCGGGTCTGCTGCATGCCTCGGTCATCACCCTCTAC < 41bp 0.440768630952578 0.773302219326756 NA NA prediction 0.546604438653512 Functional Gain - SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31901855 chr1:31901854 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_17642 0 0 1 0 2 SERINC2 chr1:31901825 3'AG 31901825 Downstream 30bp 16696 chr1 31901854 31901854 1 + G T LGG 31901855 + 31901835 31901875 41 CCAACTCGGGTCTGCTGCAGGCCTCGGTCATCACCCTCTAC CCAACTCGGGTCTGCTGCATGCCTCGGTCATCACCCTCTAC < 41bp 0.440768630952578 0.773302219326756 NA NA prediction 0.546604438653512 Functional Gain - SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31901855 chr1:31901854 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_17642 0 0 1 0 2 SERINC2 chr1:31901915 5'GT 31901915 Upstream 62bp 16697 chr7 95726878 95726878 1 + G T UCEC 95726879 + 95726859 95726899 41 ACAGAGCTGATAGCGAGGAGGAAGGCACTGTTGAGTTATCT ACAGAGCTGATAGCGAGGATGAAGGCACTGTTGAGTTATCT < 41bp 0.47648372660517 0.773302117754036 NA NA prediction 0.546604235508072 Functional Gain - DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95726879 chr7:95726878 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_17643 0 0 0 0 1 DYNC1I1 chr7:95726795 3'AG 95726795 Downstream 84bp 16698 chr2 79254184 79254184 1 + G T UCEC 79254185 + 79254165 79254205 41 TTGCCAGAAGCGGCCCTCTGGAAAACTGGTGTCTGTGCTCA TTGCCAGAAGCGGCCCTCTTGAAAACTGGTGTCTGTGCTCA < 41bp 0.583861346324827 0.857158605138037 NA NA prediction 0.546594517626421 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79254185 chr2:79254184 stopgain 0.979 1 20 hm7G_associated_SNPs_17644 0 0 0 0 1 REG3G chr2:79254160 3'AG 79254160 Downstream 25bp 16699 chr21 22838992 22838992 1 + G T LUSC 22838993 + 22838973 22839013 41 CAGGGTTGCAGCTGTAAATGGAAAGGGACAAGGAGACTACA CAGGGTTGCAGCTGTAAATTGAAAGGGACAAGGAGACTACA < 41bp 0.486598967261756 0.773297236456159 NA NA prediction 0.546594472912318 Functional Gain - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22838993 chr21:22838992 stopgain 1.000 1 20 hm7G_associated_SNPs_17645 0 0 1 0 2 NCAM2 chr21:22838927 3'AG 22838927 Downstream 66bp 16700 chr21 22838992 22838992 1 + G T LUSC 22838993 + 22838973 22839013 41 CAGGGTTGCAGCTGTAAATGGAAAGGGACAAGGAGACTACA CAGGGTTGCAGCTGTAAATTGAAAGGGACAAGGAGACTACA < 41bp 0.486598967261756 0.773297236456159 NA NA prediction 0.546594472912318 Functional Gain - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22838993 chr21:22838992 stopgain 1.000 1 20 hm7G_associated_SNPs_17645 0 0 1 0 2 NCAM2 chr21:22839046 5'GT 22839046 Upstream 55bp 16701 chr12 54403441 54403441 1 + G T UCEC 54403442 + 54403422 54403462 41 CAACACTAACAGTAGCGAAGGACAAGGCCACTTAAATCAAA CAACACTAACAGTAGCGAATGACAAGGCCACTTAAATCAAA < 41bp 0.55650497804019 0.829784988402677 NA NA prediction 0.546560020724975 Functional Gain - HOXC8 ENSG00000037965 CDS Human protein_coding chr12:54403442 chr12:54403441 stopgain 1.000 1 20 hm7G_associated_SNPs_17648 0 0 1 0 1 HOXC8 chr12:54403504 5'GT 54403504 Upstream 64bp 16702 chr14 24646684 24646684 1 + G T COAD 24646685 + 24646665 24646705 41 CCTCAGGGTGGAAGGAATAGGAGAGGCACTGGGTCCTGAGG CCTCAGGGTGGAAGGAATATGAGAGGCACTGGGTCCTGAGG < 41bp 0.442728623046699 0.77323955520671 NA NA prediction 0.546479110413421 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24646685 chr14:24646684 stopgain 0.059 0 20 hm7G_associated_SNPs_17652 0 0 1 0 2 REC8 chr14:24646589 3'AG 24646589 Downstream 96bp 16703 chr14 24646684 24646684 1 + G T COAD 24646685 + 24646665 24646705 41 CCTCAGGGTGGAAGGAATAGGAGAGGCACTGGGTCCTGAGG CCTCAGGGTGGAAGGAATATGAGAGGCACTGGGTCCTGAGG < 41bp 0.442728623046699 0.77323955520671 NA NA prediction 0.546479110413421 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24646685 chr14:24646684 stopgain 0.059 0 20 hm7G_associated_SNPs_17652 0 0 1 0 2 REC8 chr14:24646747 5'GT 24646747 Upstream 64bp 16704 chr9 101597550 101597550 1 + G T PRAD 101597551 + 101597531 101597571 41 GTCTCCAACAATGGCTGGTGGGCTGTTTGCTGTGAGTAAGA GTCTCCAACAATGGCTGGTTGGCTGTTTGCTGTGAGTAAGA < 41bp 0.450813077258167 0.773231538017917 NA NA prediction 0.546463076035834 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101597551 chr9:101597550 nonsynonymous SNV 0.829 4 20 hm7G_associated_SNPs_17653 0 0 1 0 1 GALNT12 chr9:101597531 3'AG 101597531 Downstream 20bp 16705 chr2 61333728 61333728 1 + G T LUAD 61333729 + 61333709 61333749 41 TTGGCCTCTGTGATGAAAAGGGTATAGAATGTGATGTTTTA TTGGCCTCTGTGATGAAAATGGTATAGAATGTGATGTTTTA < 41bp 0.459282008392084 0.773226155607069 NA NA prediction 0.546452311214137 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61333729 chr2:61333728 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_17655 0 0 0 0 2 KIAA1841 chr2:61333698 3'AG 61333698 Downstream 31bp 16706 chr2 61333728 61333728 1 + G T LUAD 61333729 + 61333709 61333749 41 TTGGCCTCTGTGATGAAAAGGGTATAGAATGTGATGTTTTA TTGGCCTCTGTGATGAAAATGGTATAGAATGTGATGTTTTA < 41bp 0.459282008392084 0.773226155607069 NA NA prediction 0.546452311214137 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61333729 chr2:61333728 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_17655 0 0 0 0 2 KIAA1841 chr2:61333797 5'GT 61333797 Upstream 70bp 16707 chr3 93803224 93803224 1 + G T HNSC 93803225 + 93803205 93803245 41 CTCTGGAATTAAGGGATGGGGAGAAGGTTCTGGATCTCTGT CTCTGGAATTAAGGGATGGTGAGAAGGTTCTGGATCTCTGT < 41bp 0.573803563332559 0.84701927076905 NA NA prediction 0.546431414872983 Functional Gain - NSUN3 ENSG00000178694 CDS Human protein_coding chr3:93803225 chr3:93803224 stopgain . 0 20 hm7G_associated_SNPs_17657 0 0 1 0 1 NSUN3 chr3:93803294 5'GT 93803294 Upstream 71bp 16708 chr10 115343999 115343999 1 + G T UCEC 115344000 + 115343980 115344020 41 TGATGGGTCCTTTCCCTCTGGGAGTGAGTGCCACATCTCTG TGATGGGTCCTTTCCCTCTTGGAGTGAGTGCCACATCTCTG < 41bp 0.588349795708321 0.861556230213798 NA NA prediction 0.546412869010953 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115344000 chr10:115343999 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_17658 0 0 0 0 1 HABP2 chr10:115343907 3'AG 115343907 Downstream 93bp 16709 chr17 40441496 40441496 1 + G T UCEC 40441497 + 40441477 40441517 41 CCAGATGCAGGTGCTGTACGGCCAGCACTTCCCCATCGAGG CCAGATGCAGGTGCTGTACTGCCAGCACTTCCCCATCGAGG < 41bp 0.440439521893299 0.773192919947406 NA NA prediction 0.546385839894812 Functional Gain - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40441497 chr17:40441496 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_17659 0 0 1 0 2 STAT5A chr17:40441420 3'AG 40441420 Downstream 77bp 16710 chr17 40441496 40441496 1 + G T UCEC 40441497 + 40441477 40441517 41 CCAGATGCAGGTGCTGTACGGCCAGCACTTCCCCATCGAGG CCAGATGCAGGTGCTGTACTGCCAGCACTTCCCCATCGAGG < 41bp 0.440439521893299 0.773192919947406 NA NA prediction 0.546385839894812 Functional Gain - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40441497 chr17:40441496 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_17659 0 0 1 0 2 STAT5A chr17:40441557 5'GT 40441557 Upstream 62bp 16711 chr12 32893061 32893061 1 + G T COAD 32893062 + 32893042 32893082 41 AACCACAGGCAACTGGAGAGGAATGCTGAAAACTTCAAAAG AACCACAGGCAACTGGAGATGAATGCTGAAAACTTCAAAAG < 41bp 0.466353287735288 0.77316641950607 NA NA prediction 0.54633283901214 Functional Gain - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32893062 chr12:32893061 stopgain 1.000 1 20 hm7G_associated_SNPs_17661 0 0 1 0 1 DNM1L chr12:32892998 3'AG 32892998 Downstream 64bp 16712 chr1 212788549 212788549 1 + G T HNSC 212788550 + 212788530 212788570 41 ACCGGATGTCCTCTGCGCTGGAATCAGTCACTGTCAGCGAC ACCGGATGTCCTCTGCGCTTGAATCAGTCACTGTCAGCGAC < 41bp 0.589436954243309 0.862600440796336 NA NA prediction 0.546326973106055 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788550 chr1:212788549 synonymous SNV . 0 20 hm7G_associated_SNPs_17662 0 0 1 2 2 ATF3 chr1:212788490 3'AG 212788490 Downstream 60bp 16713 chr1 212788549 212788549 1 + G T HNSC 212788550 + 212788530 212788570 41 ACCGGATGTCCTCTGCGCTGGAATCAGTCACTGTCAGCGAC ACCGGATGTCCTCTGCGCTTGAATCAGTCACTGTCAGCGAC < 41bp 0.589436954243309 0.862600440796336 NA NA prediction 0.546326973106055 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788550 chr1:212788549 synonymous SNV . 0 20 hm7G_associated_SNPs_17662 0 0 1 2 2 ATF3 chr1:212788603 5'GT 212788603 Upstream 55bp 16714 chr1 158813829 158813829 1 + G T STAD 158813830 + 158813810 158813850 41 TAAGCCCCCAGGTCCCTCAGGAGCCAGCACATCTGCAGCTG TAAGCCCCCAGGTCCCTCATGAGCCAGCACATCTGCAGCTG < 41bp 0.456552215718308 0.773157571752501 NA NA prediction 0.546315143505002 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813830 chr1:158813829 stopgain 0.001 0 20 hm7G_associated_SNPs_17663 0 0 0 0 2 MNDA chr1:158813745 3'AG 158813745 Downstream 85bp 16715 chr1 158813829 158813829 1 + G T STAD 158813830 + 158813810 158813850 41 TAAGCCCCCAGGTCCCTCAGGAGCCAGCACATCTGCAGCTG TAAGCCCCCAGGTCCCTCATGAGCCAGCACATCTGCAGCTG < 41bp 0.456552215718308 0.773157571752501 NA NA prediction 0.546315143505002 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813830 chr1:158813829 stopgain 0.001 0 20 hm7G_associated_SNPs_17663 0 0 0 0 2 MNDA chr1:158813912 5'GT 158813912 Upstream 84bp 16716 chr4 169049310 169049310 1 + G T LUAD 169049311 + 169049291 169049331 41 GCTAGGAGGAGCACTCCAAGGATTTGGTAAGTCTGATTATT GCTAGGAGGAGCACTCCAATGATTTGGTAAGTCTGATTATT < 41bp 0.466319216641064 0.773142448306761 NA NA prediction 0.546284896613521 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169049311 chr4:169049310 stopgain 0.891 0 20 hm7G_associated_SNPs_17666 0 0 0 0 2 ANXA10 chr4:169049235 3'AG 169049235 Downstream 76bp 16717 chr4 169049310 169049310 1 + G T LUAD 169049311 + 169049291 169049331 41 GCTAGGAGGAGCACTCCAAGGATTTGGTAAGTCTGATTATT GCTAGGAGGAGCACTCCAATGATTTGGTAAGTCTGATTATT < 41bp 0.466319216641064 0.773142448306761 NA NA prediction 0.546284896613521 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169049311 chr4:169049310 stopgain 0.891 0 20 hm7G_associated_SNPs_17666 0 0 0 0 2 ANXA10 chr4:169049316 5'GT 169049316 Upstream 7bp 16718 chr6 118596622 118596622 1 + G T LUSC 118596623 + 118596603 118596643 41 TTGTTTGGTTGGTTCCTAGGGGAAAATAAGCTGGTAGGGGA TTGTTTGGTTGGTTCCTAGTGGAAAATAAGCTGGTAGGGGA < 41bp 0.464710969970842 0.773138639782116 NA NA prediction 0.546277279564233 Functional Gain - SLC35F1 ENSG00000196376 CDS Human protein_coding chr6:118596623 chr6:118596622 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_17668 0 0 0 0 1 SLC35F1 chr6:118596622 3'AG 118596622 Downstream 1bp 16719 chr19 17430397 17430397 1 + G T UCEC 17430398 + 17430378 17430418 41 GGAGCAAGTGGAGCTGGAAGGCGAGAGCTCCGCACCTCCCC GGAGCAAGTGGAGCTGGAATGCGAGAGCTCCGCACCTCCCC < 41bp 0.569804517428372 0.842942153645959 NA NA prediction 0.546275272435175 Functional Gain - DDA1 ENSG00000130311 CDS Human protein_coding chr19:17430398 chr19:17430397 nonsynonymous SNV 0.229 2 20 hm7G_associated_SNPs_17669 0 0 1 0 1 DDA1 chr19:17430355 3'AG 17430355 Downstream 43bp 16720 chr10 104157155 104157155 1 + G T STAD 104157156 + 104157136 104157176 41 GGCTCCGCTCTAGGCCCCAGGGCCTTACGGGTATGGGTGCA GGCTCCGCTCTAGGCCCCATGGCCTTACGGGTATGGGTGCA < 41bp 0.429155434576136 0.773126014788088 NA NA prediction 0.546252029576177 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157156 chr10:104157155 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_17671 0 0 1 0 2 NFKB2 chr10:104157059 3'AG 104157059 Downstream 97bp 16721 chr10 104157155 104157155 1 + G T STAD 104157156 + 104157136 104157176 41 GGCTCCGCTCTAGGCCCCAGGGCCTTACGGGTATGGGTGCA GGCTCCGCTCTAGGCCCCATGGCCTTACGGGTATGGGTGCA < 41bp 0.429155434576136 0.773126014788088 NA NA prediction 0.546252029576177 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157156 chr10:104157155 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_17671 0 0 1 0 2 NFKB2 chr10:104157165 5'GT 104157165 Upstream 11bp 16722 chr2 95945675 95945675 1 + G T LUAD 95945676 + 95945656 95945696 41 CCTCAATCTGGGCATCTGGGGCCTGTCTGCCAGGGACGACC CCTCAATCTGGGCATCTGGTGCCTGTCTGCCAGGGACGACC < 41bp 0.43264576429778 0.773118354885412 NA NA prediction 0.546236709770825 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95945676 chr2:95945675 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_17673 0 0 0 0 1 PROM2 chr2:95945745 5'GT 95945745 Upstream 71bp 16723 chr22 50928059 50928059 1 + G T COAD 50928060 + 50928040 50928080 41 ACCTGGCCATGCTGCCCTGGGTGCGGGAGTTCAAGTACGCC ACCTGGCCATGCTGCCCTGTGTGCGGGAGTTCAAGTACGCC < 41bp 0.572082839464208 0.845184698971375 NA NA prediction 0.546203719014332 Functional Gain - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928060 chr22:50928059 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17675 0 0 0 0 3 MIOX chr22:50927961 3'AG 50927961 Downstream 99bp 16724 chr22 50928059 50928059 1 + G T COAD 50928060 + 50928040 50928080 41 ACCTGGCCATGCTGCCCTGGGTGCGGGAGTTCAAGTACGCC ACCTGGCCATGCTGCCCTGTGTGCGGGAGTTCAAGTACGCC < 41bp 0.572082839464208 0.845184698971375 NA NA prediction 0.546203719014332 Functional Gain - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928060 chr22:50928059 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17675 0 0 0 0 3 MIOX chr22:50928059 5'GT 50928059 Upstream 1bp 16725 chr22 50928059 50928059 1 + G T COAD 50928060 + 50928040 50928080 41 ACCTGGCCATGCTGCCCTGGGTGCGGGAGTTCAAGTACGCC ACCTGGCCATGCTGCCCTGTGTGCGGGAGTTCAAGTACGCC < 41bp 0.572082839464208 0.845184698971375 NA NA prediction 0.546203719014332 Functional Gain - MIOX ENSG00000100253 CDS Human protein_coding chr22:50928060 chr22:50928059 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17675 0 0 0 0 3 MIOX chr22:50928073 5'GT 50928073 Upstream 15bp 16726 chr12 109680273 109680273 1 + G T LUSC 109680274 + 109680254 109680294 41 TCCTTCGGCAACAAGCAAGGGCCCCAGCACGGGATGCTGAT TCCTTCGGCAACAAGCAAGTGCCCCAGCACGGGATGCTGAT < 41bp 0.44554535977704 0.773097819468192 NA NA prediction 0.546195638936383 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109680274 chr12:109680273 nonsynonymous SNV 0.879 4 20 hm7G_associated_SNPs_17676 0 0 0 1 1 ACACB chr12:109680242 3'AG 109680242 Downstream 32bp 16727 chr2 241533978 241533978 1 + G T LGG 241533979 + 241533959 241533999 41 GGGGTGAAGGGTGGAGCCAGGTAGATGCAGCGGTAGCATCT GGGGTGAAGGGTGGAGCCATGTAGATGCAGCGGTAGCATCT < 41bp 0.458232062491218 0.773095320490986 NA NA prediction 0.546190640981971 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533979 chr2:241533978 nonsynonymous SNV 0.196 0 20 hm7G_associated_SNPs_17677 0 0 1 1 1 CAPN10 chr2:241533960 3'AG 241533960 Downstream 19bp 16728 chr5 161300183 161300183 1 + G T UCEC 161300184 + 161300164 161300204 41 TGAAAGGTTAAAATTTAAAGGACCTATGACAGTCCTCCGGT TGAAAGGTTAAAATTTAAATGACCTATGACAGTCCTCCGGT < 41bp 0.462551082658988 0.773089998834242 NA NA prediction 0.546179997668484 Functional Gain - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161300184 chr5:161300183 stopgain 1.000 1 20 hm7G_associated_SNPs_17678 0 0 0 0 1 GABRA1 chr5:161300123 3'AG 161300123 Downstream 61bp 16729 chr18 61151824 61151824 1 + G T LUSC 61151825 + 61151805 61151845 41 TGACACTGCAAATGAAATTGGACAGGTAAGCCCCAAAACCT TGACACTGCAAATGAAATTTGACAGGTAAGCCCCAAAACCT < 41bp 0.469750252502911 0.773081531015636 NA NA prediction 0.546163062031272 Functional Gain - SERPINB5 ENSG00000206075 CDS Human protein_coding chr18:61151825 chr18:61151824 stopgain 1.000 0 20 hm7G_associated_SNPs_17681 0 0 0 0 1 SERPINB5 chr18:61151829 5'GT 61151829 Upstream 6bp 16730 chr18 20596862 20596862 1 + G T BRCA 20596863 + 20596843 20596883 41 GAGAGAAGAAAACTGCTTGGGCACACGTGTAAGGAATGTGA GAGAGAAGAAAACTGCTTGTGCACACGTGTAAGGAATGTGA < 41bp 0.572021288017407 0.84508427432234 NA NA prediction 0.546125972609866 Functional Gain - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20596863 chr18:20596862 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17683 0 0 1 0 2 RBBP8 chr18:20596791 3'AG 20596791 Downstream 72bp 16731 chr18 20596862 20596862 1 + G T BRCA 20596863 + 20596843 20596883 41 GAGAGAAGAAAACTGCTTGGGCACACGTGTAAGGAATGTGA GAGAGAAGAAAACTGCTTGTGCACACGTGTAAGGAATGTGA < 41bp 0.572021288017407 0.84508427432234 NA NA prediction 0.546125972609866 Functional Gain - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20596863 chr18:20596862 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17683 0 0 1 0 2 RBBP8 chr18:20596887 5'GT 20596887 Upstream 26bp 16732 chr1 52747421 52747421 1 + G T ESCA 52747422 + 52747402 52747442 41 TTCTTCTACAGTGTTTACCGGATGAAAAGTGTTTGCCAAAG TTCTTCTACAGTGTTTACCTGATGAAAAGTGTTTGCCAAAG < 41bp 0.558155447600988 0.831201911994329 NA NA prediction 0.546092928786682 Functional Gain - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52747422 chr1:52747421 synonymous SNV . 0 20 hm7G_associated_SNPs_17685 0 0 1 0 2 ZFYVE9 chr1:52747333 3'AG 52747333 Downstream 89bp 16733 chr1 52747421 52747421 1 + G T ESCA 52747422 + 52747402 52747442 41 TTCTTCTACAGTGTTTACCGGATGAAAAGTGTTTGCCAAAG TTCTTCTACAGTGTTTACCTGATGAAAAGTGTTTGCCAAAG < 41bp 0.558155447600988 0.831201911994329 NA NA prediction 0.546092928786682 Functional Gain - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52747422 chr1:52747421 synonymous SNV . 0 20 hm7G_associated_SNPs_17685 0 0 1 0 2 ZFYVE9 chr1:52747488 5'GT 52747488 Upstream 68bp 16734 chr19 11123694 11123694 1 + G T LUSC 11123695 + 11123675 11123715 41 CATCCTGGCCGACGAGATGGGCCTGGGGAAGACCATCCAGA CATCCTGGCCGACGAGATGTGCCTGGGGAAGACCATCCAGA < 41bp 0.445344632039366 0.773041620495506 NA NA prediction 0.546083240991012 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11123695 chr19:11123694 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_17686 0 0 1 0 2 SMARCA4 chr19:11123625 3'AG 11123625 Downstream 70bp 16735 chr19 11123694 11123694 1 + G T LUSC 11123695 + 11123675 11123715 41 CATCCTGGCCGACGAGATGGGCCTGGGGAAGACCATCCAGA CATCCTGGCCGACGAGATGTGCCTGGGGAAGACCATCCAGA < 41bp 0.445344632039366 0.773041620495506 NA NA prediction 0.546083240991012 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11123695 chr19:11123694 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_17686 0 0 1 0 2 SMARCA4 chr19:11123788 5'GT 11123788 Upstream 95bp 16736 chr16 1291473 1291473 1 + G T ESCA 1291474 + 1291454 1291494 41 GCCCTCAGGGTGCAACTGCGGGAGCAGCACCTCTACTACCA GCCCTCAGGGTGCAACTGCTGGAGCAGCACCTCTACTACCA < 41bp 0.452580366257152 0.773005092765249 NA NA prediction 0.546010185530498 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291474 chr16:1291473 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_17688 0 0 0 0 2 TPSAB1 chr16:1291435 3'AG 1291435 Downstream 39bp 16737 chr16 1291473 1291473 1 + G T ESCA 1291474 + 1291454 1291494 41 GCCCTCAGGGTGCAACTGCGGGAGCAGCACCTCTACTACCA GCCCTCAGGGTGCAACTGCTGGAGCAGCACCTCTACTACCA < 41bp 0.452580366257152 0.773005092765249 NA NA prediction 0.546010185530498 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291474 chr16:1291473 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_17688 0 0 0 0 2 TPSAB1 chr16:1291462 3'AG 1291462 Downstream 12bp 16738 chr11 121060482 121060482 1 + G T LUSC 121060483 + 121060463 121060503 41 TCTTTTGTAGGGCTGGACTGGTGTGAGGACAATGGAGGGTG TCTTTTGTAGGGCTGGACTTGTGTGAGGACAATGGAGGGTG < 41bp 0.562782283137396 0.835744825699674 NA NA prediction 0.545925085124556 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121060483 chr11:121060482 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17694 0 0 0 0 1 TECTA chr11:121060473 3'AG 121060473 Downstream 10bp 16739 chr1 150245265 150245265 1 + G T LUAD 150245266 + 150245246 150245286 41 TTGCTGTGCCACTTATCCTGGGTAAGTCCACTCCTCTCTCT TTGCTGTGCCACTTATCCTTGGTAAGTCCACTCCTCTCTCT < 41bp 0.574830996335031 0.847740364822674 NA NA prediction 0.545818736975286 Functional Gain - C1orf54 ENSG00000118292 CDS Human protein_coding chr1:150245266 chr1:150245265 synonymous SNV . 0 20 hm7G_associated_SNPs_17702 0 0 0 0 2 C1orf54 chr1:150245202 3'AG 150245202 Downstream 64bp 16740 chr1 150245265 150245265 1 + G T LUAD 150245266 + 150245246 150245286 41 TTGCTGTGCCACTTATCCTGGGTAAGTCCACTCCTCTCTCT TTGCTGTGCCACTTATCCTTGGTAAGTCCACTCCTCTCTCT < 41bp 0.574830996335031 0.847740364822674 NA NA prediction 0.545818736975286 Functional Gain - C1orf54 ENSG00000118292 CDS Human protein_coding chr1:150245266 chr1:150245265 synonymous SNV . 0 20 hm7G_associated_SNPs_17702 0 0 0 0 2 C1orf54 chr1:150245266 5'GT 150245266 Upstream 2bp 16741 chr4 68456639 68456639 1 + G T LUAD 68456640 + 68456620 68456660 41 CTACAAAGTGATGAGCGTAGGACAAAACTACACTATTGAAC CTACAAAGTGATGAGCGTATGACAAAACTACACTATTGAAC < 41bp 0.536839024353922 0.809739017927462 NA NA prediction 0.545799987147081 Functional Gain - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68456640 chr4:68456639 stopgain 0.150 1 20 hm7G_associated_SNPs_17703 0 0 0 0 2 STAP1 chr4:68456602 3'AG 68456602 Downstream 38bp 16742 chr4 68456639 68456639 1 + G T LUAD 68456640 + 68456620 68456660 41 CTACAAAGTGATGAGCGTAGGACAAAACTACACTATTGAAC CTACAAAGTGATGAGCGTATGACAAAACTACACTATTGAAC < 41bp 0.536839024353922 0.809739017927462 NA NA prediction 0.545799987147081 Functional Gain - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68456640 chr4:68456639 stopgain 0.150 1 20 hm7G_associated_SNPs_17703 0 0 0 0 2 STAP1 chr4:68456671 5'GT 68456671 Upstream 33bp 16743 chr5 149006791 149006791 1 + G T DLBC 149006792 + 149006772 149006812 41 TGGCCATCCTTCAAAACAAGGACACCAAAGGCAACAGCGGC TGGCCATCCTTCAAAACAATGACACCAAAGGCAACAGCGGC < 41bp 0.570843303424941 0.843714234943186 NA NA prediction 0.54574186303649 Functional Gain - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:149006792 chr5:149006791 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_17706 0 0 0 0 1 ARHGEF37 chr5:149006834 5'GT 149006834 Upstream 44bp 16744 chr10 104161572 104161572 1 + G T COAD 104161573 + 104161553 104161593 41 TAGACGGGCCAGAAGCCCAGGGCAGCTGGGCAGAGCTGGCA TAGACGGGCCAGAAGCCCATGGCAGCTGGGCAGAGCTGGCA < 41bp 0.599458501039984 0.872319412075809 NA NA prediction 0.54572182207165 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104161573 chr10:104161572 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_17709 0 0 0 0 1 NFKB2 chr10:104161502 3'AG 104161502 Downstream 71bp 16745 chr3 100447590 100447590 1 + G T LUAD 100447591 + 100447571 100447611 41 GACCCCTTGAATCAAGTCAGGTGAAATATCTCCGTCGAGAA GACCCCTTGAATCAAGTCATGTGAAATATCTCCGTCGAGAA < 41bp 0.467536253793347 0.772851247272206 NA NA prediction 0.545702494544413 Functional Gain - TFG ENSG00000114354 CDS Human protein_coding chr3:100447591 chr3:100447590 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17712 0 0 1 0 1 TFG chr3:100447556 3'AG 100447556 Downstream 35bp 16746 chr16 28847370 28847370 1 + G T BLCA 28847371 + 28847351 28847391 41 GGGGGCCCCCCCAAGGCGCGGTGCCCCAGAGTGGGGTGCCT GGGGGCCCCCCCAAGGCGCTGTGCCCCAGAGTGGGGTGCCT < 41bp 0.466877357252152 0.772848733560591 NA NA prediction 0.545697467121181 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28847371 chr16:28847370 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_17713 0 0 1 0 1 ATXN2L chr16:28847443 5'GT 28847443 Upstream 74bp 16747 chr18 29040826 29040826 1 + G T STAD 29040827 + 29040807 29040847 41 CTATCGTCTGGTTGTGAGTGGTGCAGACAAAGATGGAGAAG CTATCGTCTGGTTGTGAGTTGTGCAGACAAAGATGGAGAAG < 41bp 0.469286532854201 0.772835387646864 NA NA prediction 0.545670775293728 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29040827 chr18:29040826 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17716 0 0 0 0 2 DSG3 chr18:29040796 3'AG 29040796 Downstream 31bp 16748 chr18 29040826 29040826 1 + G T STAD 29040827 + 29040807 29040847 41 CTATCGTCTGGTTGTGAGTGGTGCAGACAAAGATGGAGAAG CTATCGTCTGGTTGTGAGTTGTGCAGACAAAGATGGAGAAG < 41bp 0.469286532854201 0.772835387646864 NA NA prediction 0.545670775293728 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29040827 chr18:29040826 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17716 0 0 0 0 2 DSG3 chr18:29040924 5'GT 29040924 Upstream 99bp 16749 chr3 113563391 113563391 1 + G T UCEC 113563392 + 113563372 113563412 41 GCCTTGCCACCGACTTACAGGAAGATGTAGAGGAAAATCCT GCCTTGCCACCGACTTACATGAAGATGTAGAGGAAAATCCT < 41bp 0.47089508188802 0.772828372494948 NA NA prediction 0.545656744989896 Functional Gain - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113563392 chr3:113563391 nonsynonymous SNV 0.645 0 20 hm7G_associated_SNPs_17717 0 0 0 0 1 GRAMD1C chr3:113563350 3'AG 113563350 Downstream 42bp 16750 chr11 125503100 125503100 1 + G T LIHC 125503101 + 125503081 125503121 41 GGCTTGGCAACAGTATTTCGGTATAATAATCGTGAGCGTTT GGCTTGGCAACAGTATTTCTGTATAATAATCGTGAGCGTTT < 41bp 0.465945780607701 0.77281441447229 NA NA prediction 0.54562882894458 Functional Gain - CHEK1 ENSG00000149554 CDS Human protein_coding chr11:125503101 chr11:125503100 nonsynonymous SNV 0.979 2 20 hm7G_associated_SNPs_17719 0 0 1 0 1 CHEK1 chr11:125503058 3'AG 125503058 Downstream 43bp 16751 chrX 107834336 107834336 1 + G T UCEC 107834337 + 107834317 107834357 41 CCTGGATTTCCTGGAGAAAGGGGTCAGAAAGGTGATGAAGG CCTGGATTTCCTGGAGAAATGGGTCAGAAAGGTGATGAAGG < 41bp 0.452107646367644 0.772811134176817 NA NA prediction 0.545622268353634 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107834337 chrX:107834336 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17720 0 0 1 0 1 COL4A5 chrX:107834288 3'AG 107834288 Downstream 49bp 16752 chr3 12873053 12873053 1 + G T ESCA 12873054 + 12873034 12873074 41 GACTCATTGAGCCACTAAGGGCCACCTGCACTGCCAAGGTA GACTCATTGAGCCACTAAGTGCCACCTGCACTGCCAAGGTA < 41bp 0.437976145823444 0.77280517979028 NA NA prediction 0.545610359580559 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12873054 chr3:12873053 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_17722 0 0 0 0 2 CAND2 chr3:12872964 3'AG 12872964 Downstream 90bp 16753 chr3 12873053 12873053 1 + G T ESCA 12873054 + 12873034 12873074 41 GACTCATTGAGCCACTAAGGGCCACCTGCACTGCCAAGGTA GACTCATTGAGCCACTAAGTGCCACCTGCACTGCCAAGGTA < 41bp 0.437976145823444 0.77280517979028 NA NA prediction 0.545610359580559 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12873054 chr3:12873053 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_17722 0 0 0 0 2 CAND2 chr3:12873071 5'GT 12873071 Upstream 19bp 16754 chr10 118960674 118960674 1 + G T UCEC 118960675 + 118960655 118960695 41 CATGTCTTTCTCCAGTGGTGGAAGACAGAAAACAGGATCTC CATGTCTTTCTCCAGTGGTTGAAGACAGAAAACAGGATCTC < 41bp 0.548848237328507 0.821651021088088 NA NA prediction 0.545605567519162 Functional Gain - KCNK18 ENSG00000186795 CDS Human protein_coding chr10:118960675 chr10:118960674 synonymous SNV . 0 20 hm7G_associated_SNPs_17723 0 0 0 0 1 KCNK18 chr10:118960670 3'AG 118960670 Downstream 5bp 16755 chr1 148932865 148932865 1 + G T LUAD 148932866 + 148932846 148932886 41 GCATCCAGTACCAAGAGTTGGTGGGAGACGGGTGAGGTACA GCATCCAGTACCAAGAGTTTGTGGGAGACGGGTGAGGTACA < 41bp 0.557225117555719 0.830014464843076 NA NA prediction 0.545578694574715 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932866 chr1:148932865 . . 0 20 hm7G_associated_SNPs_17726 0 0 0 0 2 LOC645166 chr1:148932786 3'AG 148932786 Downstream 80bp 16756 chr1 148932865 148932865 1 + G T LUAD 148932866 + 148932846 148932886 41 GCATCCAGTACCAAGAGTTGGTGGGAGACGGGTGAGGTACA GCATCCAGTACCAAGAGTTTGTGGGAGACGGGTGAGGTACA < 41bp 0.557225117555719 0.830014464843076 NA NA prediction 0.545578694574715 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148932866 chr1:148932865 . . 0 20 hm7G_associated_SNPs_17726 0 0 0 0 2 LOC645166 chr1:148932920 5'GT 148932920 Upstream 56bp 16757 chr8 75761387 75761387 1 + G T COAD 75761388 + 75761368 75761408 41 AGAAGCACCATATAAAGTAGGGGTACCATGTTCATCTTGTC AGAAGCACCATATAAAGTATGGGTACCATGTTCATCTTGTC < 41bp 0.484803996131714 0.77276348667561 NA NA prediction 0.54552697335122 Functional Gain - PI15 ENSG00000137558 CDS Human protein_coding chr8:75761388 chr8:75761387 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_17728 0 0 0 0 1 PI15 chr8:75761353 3'AG 75761353 Downstream 35bp 16758 chr14 21819295 21819295 1 + G T UCEC 21819296 + 21819276 21819316 41 AGATCTGGCTACCCCAATAGGAAGGCTGAAGGTTTCCCTTC AGATCTGGCTACCCCAATATGAAGGCTGAAGGTTTCCCTTC < 41bp 0.558185509346185 0.830947257009819 NA NA prediction 0.545523495327269 Functional Gain - RPGRIP1 ENSG00000092200 CDS Human protein_coding chr14:21819296 chr14:21819295 stopgain 0.867 1 20 hm7G_associated_SNPs_17729 0 0 0 0 1 RPGRIP1 chr14:21819263 3'AG 21819263 Downstream 33bp 16759 chr16 11145497 11145497 1 + G T BLCA 11145498 + 11145478 11145518 41 GATGTGGAGAAGACCCGGCGGGTGAGTGAGCACAGGACCTG GATGTGGAGAAGACCCGGCTGGTGAGTGAGCACAGGACCTG < 41bp 0.439927402577086 0.772758873282279 NA NA prediction 0.545517746564559 Functional Gain - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11145498 chr16:11145497 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_17732 0 0 1 0 1 CLEC16A chr16:11145498 5'GT 11145498 Upstream 2bp 16760 chr19 3589544 3589544 1 + G T SKCM 3589545 + 3589525 3589565 41 CTGGGGGGGCTGCCACAGTGGAGGAAGCGGTGAGTGAAGGG CTGGGGGGGCTGCCACAGTTGAGGAAGCGGTGAGTGAAGGG < 41bp 0.58425438259298 0.857009866014927 NA NA prediction 0.545510966843894 Functional Gain - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589545 chr19:3589544 synonymous SNV . 0 20 hm7G_associated_SNPs_17733 0 0 0 0 1 GIPC3 chr19:3589553 5'GT 3589553 Upstream 10bp 16761 chr17 41053082 41053082 1 + G T LUSC 41053083 + 41053063 41053103 41 TGGGCATTAAACTCCTTTGGGTAGCTGTGATTGGAGACTGG TGGGCATTAAACTCCTTTGTGTAGCTGTGATTGGAGACTGG < 41bp 0.55744690598703 0.830185429624091 NA NA prediction 0.545477047274122 Functional Gain - G6PC ENSG00000131482 CDS Human protein_coding chr17:41053083 chr17:41053082 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17735 0 0 1 0 1 G6PC chr17:41053123 5'GT 41053123 Upstream 42bp 16762 chrX 86869440 86869440 1 + G T LUSC 86869441 + 86869421 86869461 41 TATTTCCTATTTCCAGGTTGGTTCTCAGCGCAGTGTCTGAT TATTTCCTATTTCCAGGTTTGTTCTCAGCGCAGTGTCTGAT < 41bp 0.541940678523476 0.814677040211041 NA NA prediction 0.54547272337513 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86869441 chrX:86869440 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_17736 0 0 0 0 1 KLHL4 chrX:86869437 3'AG 86869437 Downstream 4bp 16763 chr12 22208541 22208541 1 + G T LUAD 22208542 + 22208522 22208562 41 ATGGAGTGAAATTCAGAAAGGAGGTAATCTCTTTTCAGTCT ATGGAGTGAAATTCAGAAATGAGGTAATCTCTTTTCAGTCT < 41bp 0.476860185157997 0.772698794306805 NA NA prediction 0.545397588613609 Functional Gain - CMAS ENSG00000111726 CDS Human protein_coding chr12:22208542 chr12:22208541 stopgain 1.000 1 20 hm7G_associated_SNPs_17741 0 0 0 0 1 CMAS chr12:22208544 5'GT 22208544 Upstream 4bp 16764 chr22 22043063 22043063 1 + G T LUSC 22043064 + 22043044 22043084 41 CCCTTCAAAGACGAGTTCCGGCCCAACCTCTCGCACACGGG CCCTTCAAAGACGAGTTCCTGCCCAACCTCTCGCACACGGG < 41bp 0.588493150536868 0.861188431351654 NA NA prediction 0.545390561629572 Functional Gain - PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22043064 chr22:22043063 nonsynonymous SNV 0.861 1 20 hm7G_associated_SNPs_17742 0 0 1 0 2 PPIL2 chr22:22043021 3'AG 22043021 Downstream 43bp 16765 chr22 22043063 22043063 1 + G T LUSC 22043064 + 22043044 22043084 41 CCCTTCAAAGACGAGTTCCGGCCCAACCTCTCGCACACGGG CCCTTCAAAGACGAGTTCCTGCCCAACCTCTCGCACACGGG < 41bp 0.588493150536868 0.861188431351654 NA NA prediction 0.545390561629572 Functional Gain - PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22043064 chr22:22043063 nonsynonymous SNV 0.861 1 20 hm7G_associated_SNPs_17742 0 0 1 0 2 PPIL2 chr22:22043138 5'GT 22043138 Upstream 76bp 16766 chr12 132328579 132328579 1 + G T UCEC 132328580 + 132328560 132328600 41 CTCCCACGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAG CTCCCACGGCGCAGCCCGATGAGCCTCCCCTGCTGCCGGAG < 41bp 0.428335452266491 0.772687476406654 NA NA prediction 0.545374952813308 Functional Gain - MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328580 chr12:132328579 nonsynonymous SNV 0.340 0 20 hm7G_associated_SNPs_17743 0 0 0 0 2 MMP17 chr12:132328542 3'AG 132328542 Downstream 38bp 16767 chr12 132328579 132328579 1 + G T UCEC 132328580 + 132328560 132328600 41 CTCCCACGGCGCAGCCCGAGGAGCCTCCCCTGCTGCCGGAG CTCCCACGGCGCAGCCCGATGAGCCTCCCCTGCTGCCGGAG < 41bp 0.428335452266491 0.772687476406654 NA NA prediction 0.545374952813308 Functional Gain - MMP17 ENSG00000198598 CDS Human protein_coding chr12:132328580 chr12:132328579 nonsynonymous SNV 0.340 0 20 hm7G_associated_SNPs_17743 0 0 0 0 2 MMP17 chr12:132328626 5'GT 132328626 Upstream 48bp 16768 chr17 7246853 7246853 1 + G T LUAD 7246854 + 7246834 7246874 41 ACGGCTCGAGCTGGGTACCGGGGACGGGCACTGGATTATGC ACGGCTCGAGCTGGGTACCTGGGACGGGCACTGGATTATGC < 41bp 0.584805242926567 0.85748524679346 NA NA prediction 0.545360007733787 Functional Gain - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7246854 chr17:7246853 nonsynonymous SNV 0.247 1 20 hm7G_associated_SNPs_17744 0 0 0 0 1 ACAP1 chr17:7246881 5'GT 7246881 Upstream 29bp 16769 chr5 159640774 159640774 1 + G T SARC 159640775 + 159640755 159640795 41 GTGTTGTCTGCGTGCACATGGGTGAGCCGGAAAGGAGACCT GTGTTGTCTGCGTGCACATTGGTGAGCCGGAAAGGAGACCT < 41bp 0.586761611235622 0.859436267336085 NA NA prediction 0.545349312200925 Functional Gain - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159640775 chr5:159640774 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_17745 0 0 0 0 2 FABP6 chr5:159640743 3'AG 159640743 Downstream 32bp 16770 chr5 159640774 159640774 1 + G T SARC 159640775 + 159640755 159640795 41 GTGTTGTCTGCGTGCACATGGGTGAGCCGGAAAGGAGACCT GTGTTGTCTGCGTGCACATTGGTGAGCCGGAAAGGAGACCT < 41bp 0.586761611235622 0.859436267336085 NA NA prediction 0.545349312200925 Functional Gain - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159640775 chr5:159640774 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_17745 0 0 0 0 2 FABP6 chr5:159640826 5'GT 159640826 Upstream 53bp 16771 chr3 105266079 105266079 1 + G T UCEC 105266080 + 105266060 105266100 41 TCTGCGAAACTGCTCTGCAGGAGGTTGAAGGACTAAAGAAA TCTGCGAAACTGCTCTGCATGAGGTTGAAGGACTAAAGAAA < 41bp 0.459407847675367 0.77267150161921 NA NA prediction 0.545343003238421 Functional Gain - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105266080 chr3:105266079 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_17746 0 0 1 0 2 ALCAM chr3:105265993 3'AG 105265993 Downstream 87bp 16772 chr3 105266079 105266079 1 + G T UCEC 105266080 + 105266060 105266100 41 TCTGCGAAACTGCTCTGCAGGAGGTTGAAGGACTAAAGAAA TCTGCGAAACTGCTCTGCATGAGGTTGAAGGACTAAAGAAA < 41bp 0.459407847675367 0.77267150161921 NA NA prediction 0.545343003238421 Functional Gain - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105266080 chr3:105266079 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_17746 0 0 1 0 2 ALCAM chr3:105266128 5'GT 105266128 Upstream 50bp 16773 chr2 162660996 162660996 1 + G T LUSC 162660997 + 162660977 162661017 41 TTGGAGTACATGTGCCCTTGGGAGGAAGAAAAAGCCATCGA TTGGAGTACATGTGCCCTTTGGAGGAAGAAAAAGCCATCGA < 41bp 0.466295792067043 0.772629086729772 NA NA prediction 0.545258173459543 Functional Gain - SLC4A10 ENSG00000144290 CDS Human protein_coding chr2:162660997 chr2:162660996 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17748 0 0 0 3 1 SLC4A10 chr2:162660959 3'AG 162660959 Downstream 38bp 16774 chr22 44965251 44965251 1 + G T LUAD 44965252 + 44965232 44965272 41 AGACGGGGATCAGATGGGAGGGTGACCTGGTGAGAGATTTT AGACGGGGATCAGATGGGATGGTGACCTGGTGAGAGATTTT < 41bp 0.492393754241528 0.772608093599431 NA NA prediction 0.545216187198862 Functional Gain - LINC00207 ENSG00000187012 ncRNA_exonic Human lincRNA chr22:44965252 chr22:44965251 . . 0 20 hm7G_associated_SNPs_17750 0 0 0 1 1 LINC00207 chr22:44965321 5'GT 44965321 Upstream 71bp 16775 chr14 72152177 72152177 1 + G T LUSC 72152178 + 72152158 72152198 41 TTCCGAAATAATAACAAGTGGCAGAGGAACGCCAGCAAGGG TTCCGAAATAATAACAAGTTGCAGAGGAACGCCAGCAAGGG < 41bp 0.584524613050047 0.85713004721424 NA NA prediction 0.545210868328386 Functional Gain - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72152178 chr14:72152177 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_17751 0 0 1 0 1 SIPA1L1 chr14:72152079 3'AG 72152079 Downstream 99bp 16776 chr12 3702301 3702301 1 + G T LUAD 3702302 + 3702282 3702322 41 AGTAGACTTGGATTTTAAGGGACAGCTGTGTGAAACATCTG AGTAGACTTGGATTTTAAGTGACAGCTGTGTGAAACATCTG < 41bp 0.474873699577191 0.772586155761582 NA NA prediction 0.545172311523164 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3702302 chr12:3702301 stopgain 1.000 1 20 hm7G_associated_SNPs_17754 0 0 0 1 1 PRMT8 chr12:3702265 3'AG 3702265 Downstream 37bp 16777 chr12 42778772 42778772 1 + G T LUAD 42778773 + 42778753 42778793 41 CCTGGTGCCTCCTACAAACGGCAGAATGAAGGAAATCCTGA CCTGGTGCCTCCTACAAACTGCAGAATGAAGGAAATCCTGA < 41bp 0.55507074320425 0.827656461453098 NA NA prediction 0.545171436497697 Functional Gain - PPHLN1 ENSG00000134283 CDS Human protein_coding chr12:42778773 chr12:42778772 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_17755 0 0 0 0 1 PPHLN1 chr12:42778798 5'GT 42778798 Upstream 27bp 16778 chr19 44571365 44571365 1 + G T SARC 44571366 + 44571346 44571386 41 ATCCAAATGTGAAGACTGTGGGAAGCGCTACAAGAGGCGCT ATCCAAATGTGAAGACTGTTGGAAGCGCTACAAGAGGCGCT < 41bp 0.559773782455561 0.832356391828917 NA NA prediction 0.545165218746713 Functional Gain - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44571366 chr19:44571365 nonsynonymous SNV 0.311 3 20 hm7G_associated_SNPs_17756 0 0 1 0 1 ZNF223 chr19:44571426 5'GT 44571426 Upstream 62bp 16779 chr4 83372248 83372248 1 + G T BLCA 83372249 + 83372229 83372269 41 CCTATCCCTGCAGCATCTGGGAATGGAGTGGATGATCTGCA CCTATCCCTGCAGCATCTGTGAATGGAGTGGATGATCTGCA < 41bp 0.573669087249503 0.84623704184587 NA NA prediction 0.545135909192734 Functional Gain - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83372249 chr4:83372248 nonsynonymous SNV 0.070 1 20 hm7G_associated_SNPs_17759 0 0 1 0 1 ENOPH1 chr4:83372196 3'AG 83372196 Downstream 53bp 16780 chr14 57876173 57876173 1 + G T UCEC 57876174 + 57876154 57876194 41 GGTTTTGTTCGAGATAAGAGGCTGTTCAGATACTATTTAAA GGTTTTGTTCGAGATAAGATGCTGTTCAGATACTATTTAAA < 41bp 0.528436909852122 0.800992609172189 NA NA prediction 0.545111398640134 Functional Gain - NAA30 ENSG00000139977 CDS Human protein_coding chr14:57876174 chr14:57876173 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17760 0 0 1 0 1 NAA30 chr14:57876097 3'AG 57876097 Downstream 77bp 16781 chr16 25143810 25143810 1 + G T LUAD 25143811 + 25143791 25143831 41 TGTCAAATTGTCAACCTTGGGGCAGGCATGGATACCACCTT TGTCAAATTGTCAACCTTGTGGCAGGCATGGATACCACCTT < 41bp 0.583624165397361 0.856168267334722 NA NA prediction 0.545088203874722 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25143811 chr16:25143810 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17762 0 0 1 0 2 LCMT1 chr16:25143723 3'AG 25143723 Downstream 88bp 16782 chr16 25143810 25143810 1 + G T LUAD 25143811 + 25143791 25143831 41 TGTCAAATTGTCAACCTTGGGGCAGGCATGGATACCACCTT TGTCAAATTGTCAACCTTGTGGCAGGCATGGATACCACCTT < 41bp 0.583624165397361 0.856168267334722 NA NA prediction 0.545088203874722 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25143811 chr16:25143810 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17762 0 0 1 0 2 LCMT1 chr16:25143844 5'GT 25143844 Upstream 35bp 16783 chr10 11797576 11797576 1 + G T LUAD 11797577 + 11797557 11797597 41 CTCTTCTGTTCTACCCCTGGGGTTGCCTTGGCAAGAGCAGT CTCTTCTGTTCTACCCCTGTGGTTGCCTTGGCAAGAGCAGT < 41bp 0.584427440652742 0.85695633024328 NA NA prediction 0.545057779181075 Functional Gain - ECHDC3 ENSG00000134463 CDS Human protein_coding chr10:11797577 chr10:11797576 nonsynonymous SNV 0.975 3 20 hm7G_associated_SNPs_17764 0 0 1 0 1 ECHDC3 chr10:11797607 5'GT 11797607 Upstream 32bp 16784 chr13 25255774 25255774 1 + G T UCEC 25255775 + 25255755 25255795 41 CAGACAAGGGGGATGGCAAGGAGAAGTATAGGGGTCTGAAG CAGACAAGGGGGATGGCAATGAGAAGTATAGGGGTCTGAAG < 41bp 0.580455061862314 0.852982250982565 NA NA prediction 0.545054378240501 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25255775 chr13:25255774 nonsynonymous SNV 0.074 2 20 hm7G_associated_SNPs_17765 0 0 0 0 2 ATP12A chr13:25255700 3'AG 25255700 Downstream 75bp 16785 chr13 25255774 25255774 1 + G T UCEC 25255775 + 25255755 25255795 41 CAGACAAGGGGGATGGCAAGGAGAAGTATAGGGGTCTGAAG CAGACAAGGGGGATGGCAATGAGAAGTATAGGGGTCTGAAG < 41bp 0.580455061862314 0.852982250982565 NA NA prediction 0.545054378240501 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25255775 chr13:25255774 nonsynonymous SNV 0.074 2 20 hm7G_associated_SNPs_17765 0 0 0 0 2 ATP12A chr13:25255858 5'GT 25255858 Upstream 85bp 16786 chr6 127898626 127898626 1 + G T STAD 127898627 + 127898607 127898647 41 CAGTATGGCTGGCAATATAGGACAGGTAAGAATGACTCTTG CAGTATGGCTGGCAATATATGACAGGTAAGAATGACTCTTG < 41bp 0.520285635404579 0.792807982517112 NA NA prediction 0.545044694225066 Functional Gain - C6orf58 ENSG00000184530 CDS Human protein_coding chr6:127898627 chr6:127898626 nonsynonymous SNV 0.042 1 20 hm7G_associated_SNPs_17766 0 0 0 0 1 C6orf58 chr6:127898631 5'GT 127898631 Upstream 6bp 16787 chr10 7755193 7755193 1 + G T LUAD 7755194 + 7755174 7755214 41 TATTAAGGAGAAAACTGTGGGCCGAGCTCTTTATGCACAGG TATTAAGGAGAAAACTGTGTGCCGAGCTCTTTATGCACAGG < 41bp 0.583766584417719 0.856281193511463 NA NA prediction 0.545029218187489 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7755194 chr10:7755193 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_17767 0 0 1 0 2 ITIH2 chr10:7755144 3'AG 7755144 Downstream 50bp 16788 chr10 7755193 7755193 1 + G T LUAD 7755194 + 7755174 7755214 41 TATTAAGGAGAAAACTGTGGGCCGAGCTCTTTATGCACAGG TATTAAGGAGAAAACTGTGTGCCGAGCTCTTTATGCACAGG < 41bp 0.583766584417719 0.856281193511463 NA NA prediction 0.545029218187489 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7755194 chr10:7755193 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_17767 0 0 1 0 2 ITIH2 chr10:7755248 5'GT 7755248 Upstream 56bp 16789 chr12 32854406 32854406 1 + G T UCEC 32854407 + 32854387 32854427 41 GAGGGACCTGCTTCCCAGAGGTACTGGAATTGTCACCCGGA GAGGGACCTGCTTCCCAGATGTACTGGAATTGTCACCCGGA < 41bp 0.455693419378344 0.772514097470207 NA NA prediction 0.545028194940413 Functional Gain - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32854407 chr12:32854406 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17769 0 0 1 2 2 DNM1L chr12:32854349 3'AG 32854349 Downstream 58bp 16790 chr12 32854406 32854406 1 + G T UCEC 32854407 + 32854387 32854427 41 GAGGGACCTGCTTCCCAGAGGTACTGGAATTGTCACCCGGA GAGGGACCTGCTTCCCAGATGTACTGGAATTGTCACCCGGA < 41bp 0.455693419378344 0.772514097470207 NA NA prediction 0.545028194940413 Functional Gain - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32854407 chr12:32854406 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17769 0 0 1 2 2 DNM1L chr12:32854496 5'GT 32854496 Upstream 91bp 16791 chr16 31419090 31419090 1 + G T LUSC 31419091 + 31419071 31419111 41 TGTCTCTCTGCTGCAGGTGGGACACGCTTTCCAGGGACCCA TGTCTCTCTGCTGCAGGTGTGACACGCTTTCCAGGGACCCA < 41bp 0.446957772466409 0.772510730038485 NA NA prediction 0.545021460076971 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31419091 chr16:31419090 stopgain 0.653 0 20 hm7G_associated_SNPs_17770 0 0 0 0 1 ITGAD chr16:31419087 3'AG 31419087 Downstream 4bp 16792 chr16 55798683 55798683 1 + G T UCEC 55798684 + 55798664 55798704 41 GAAGTTCGTCAGCTTAGAAGGATTTGCACAGCCTGTGGCCG GAAGTTCGTCAGCTTAGAATGATTTGCACAGCCTGTGGCCG < 41bp 0.489962909341159 0.772506004000103 NA NA prediction 0.545012008000205 Functional Gain - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55798684 chr16:55798683 . . 0 20 hm7G_associated_SNPs_17771 0 0 0 0 1 CES1P1 chr16:55798609 3'AG 55798609 Downstream 75bp 16793 chr8 22275274 22275274 1 + G T LUAD 22275275 + 22275255 22275295 41 GGCCTTTGGCATCCTGGCCGGCAGCCACTTCTCTGCCAACT GGCCTTTGGCATCCTGGCCTGCAGCCACTTCTCTGCCAACT < 41bp 0.581267481308244 0.853772196125983 NA NA prediction 0.545009429635477 Functional Gain - SLC39A14 ENSG00000104635 CDS Human protein_coding chr8:22275275 chr8:22275274 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_17772 0 0 1 0 1 SLC39A14 chr8:22275348 5'GT 22275348 Upstream 75bp 16794 chr12 113873287 113873287 1 + G T LUSC 113873288 + 113873268 113873308 41 ATGTACCCATCATTGCCATGGAGACCCATGGGGCACACTGC ATGTACCCATCATTGCCATTGAGACCCATGGGGCACACTGC < 41bp 0.598470889787551 0.870974405822949 NA NA prediction 0.545007032070797 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113873288 chr12:113873287 nonsynonymous SNV 0.965 2 20 hm7G_associated_SNPs_17774 0 0 1 0 1 SDSL chr12:113873361 5'GT 113873361 Upstream 75bp 16795 chr6 96997630 96997630 1 + G T LUAD 96997631 + 96997611 96997651 41 TTTTCAACTTCTTAGCTTCGGATTTAATGATGGCAGTAGAC TTTTCAACTTCTTAGCTTCTGATTTAATGATGGCAGTAGAC < 41bp 0.555186234058258 0.827688964675056 NA NA prediction 0.545005461233595 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96997631 chr6:96997630 synonymous SNV . 0 20 hm7G_associated_SNPs_17775 0 0 0 1 2 UFL1 chr6:96997545 3'AG 96997545 Downstream 86bp 16796 chr6 96997630 96997630 1 + G T LUAD 96997631 + 96997611 96997651 41 TTTTCAACTTCTTAGCTTCGGATTTAATGATGGCAGTAGAC TTTTCAACTTCTTAGCTTCTGATTTAATGATGGCAGTAGAC < 41bp 0.555186234058258 0.827688964675056 NA NA prediction 0.545005461233595 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96997631 chr6:96997630 synonymous SNV . 0 20 hm7G_associated_SNPs_17775 0 0 0 1 2 UFL1 chr6:96997675 5'GT 96997675 Upstream 46bp 16797 chr2 1251116 1251116 1 + G T LUAD 1251117 + 1251097 1251137 41 AGGTTGTGCATATGGGGTGGGTAAATGAGAAACTCCAAGGA AGGTTGTGCATATGGGGTGTGTAAATGAGAAACTCCAAGGA < 41bp 0.469730465670355 0.772495121769016 NA NA prediction 0.544990243538032 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1251117 chr2:1251116 nonsynonymous SNV 0.900 4 20 hm7G_associated_SNPs_17776 0 0 0 0 2 SNTG2 chr2:1251099 3'AG 1251099 Downstream 18bp 16798 chr2 1251116 1251116 1 + G T LUAD 1251117 + 1251097 1251137 41 AGGTTGTGCATATGGGGTGGGTAAATGAGAAACTCCAAGGA AGGTTGTGCATATGGGGTGTGTAAATGAGAAACTCCAAGGA < 41bp 0.469730465670355 0.772495121769016 NA NA prediction 0.544990243538032 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1251117 chr2:1251116 nonsynonymous SNV 0.900 4 20 hm7G_associated_SNPs_17776 0 0 0 0 2 SNTG2 chr2:1251215 5'GT 1251215 Upstream 100bp 16799 chr7 73467615 73467615 1 + G T SKCM 73467616 + 73467596 73467636 41 TCCAGTTGTCCCAGGTGCTGGGATCCCAGGTGCTGCGGTTC TCCAGTTGTCCCAGGTGCTTGGATCCCAGGTGCTGCGGTTC < 41bp 0.571097773888741 0.843587069683349 NA NA prediction 0.544978591589215 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73467616 chr7:73467615 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_17778 0 0 0 0 1 ELN chr7:73467639 5'GT 73467639 Upstream 25bp 16800 chr11 63312110 63312110 1 + G T LUAD 63312111 + 63312091 63312131 41 AGGTGAGTACCCCGGGGCTGGCTCCTCCAGTGTCTTCTCAG AGGTGAGTACCCCGGGGCTTGCTCCTCCAGTGTCTTCTCAG < 41bp 0.439369076265973 0.772486157325184 NA NA prediction 0.544972314650369 Functional Gain - RARRES3 ENSG00000133321 CDS Human protein_coding chr11:63312111 chr11:63312110 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_17779 0 0 0 0 1 RARRES3 chr11:63312093 3'AG 63312093 Downstream 18bp 16801 chr2 173457750 173457750 1 + G T THCA 173457751 + 173457731 173457771 41 GTATTCCCTAGAGGGTTACGGGACAGATGCAGTTATCTACA GTATTCCCTAGAGGGTTACTGGACAGATGCAGTTATCTACA < 41bp 0.566323343839235 0.838798697927 NA NA prediction 0.54495070817553 Functional Gain - PDK1 ENSG00000152256 CDS Human protein_coding chr2:173457751 chr2:173457750 nonsynonymous SNV 0.911 4 20 hm7G_associated_SNPs_17780 0 0 1 1 2 PDK1 chr2:173457663 3'AG 173457663 Downstream 88bp 16802 chr2 173457750 173457750 1 + G T THCA 173457751 + 173457731 173457771 41 GTATTCCCTAGAGGGTTACGGGACAGATGCAGTTATCTACA GTATTCCCTAGAGGGTTACTGGACAGATGCAGTTATCTACA < 41bp 0.566323343839235 0.838798697927 NA NA prediction 0.54495070817553 Functional Gain - PDK1 ENSG00000152256 CDS Human protein_coding chr2:173457751 chr2:173457750 nonsynonymous SNV 0.911 4 20 hm7G_associated_SNPs_17780 0 0 1 1 2 PDK1 chr2:173457776 5'GT 173457776 Upstream 27bp 16803 chr7 34125411 34125411 1 + G T LUAD 34125412 + 34125392 34125432 41 ACAGTTTTGTAGAAGTCATGGCTGCGCCGCATCTCAAGGGC ACAGTTTTGTAGAAGTCATTGCTGCGCCGCATCTCAAGGGC < 41bp 0.443641923365189 0.772471506677066 NA NA prediction 0.544943013354132 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34125412 chr7:34125411 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_17782 0 0 0 0 1 BMPER chr7:34125368 3'AG 34125368 Downstream 44bp 16804 chr1 111854938 111854938 1 + G T rs41282496 111854939 + 111854919 111854959 41 ATCTACGCCTTTGCTGGGAGGCAGAACAACGAGATCACCAC ATCTACGCCTTTGCTGGGATGCAGAACAACGAGATCACCAC < 41bp 0.578426487011884 0.850892836472585 NA NA prediction 0.544932698921403 Functional Gain - CHIA ENSG00000134216 CDS Human protein_coding chr1:111854939 chr1:111854938 nonsynonymous SNV 0.534 0 20 hm7G_associated_SNPs_17783 0 0 0 0 1 CHIA chr1:111855013 5'GT 111855013 Upstream 76bp 16805 chr1 57351681 57351681 1 + G T UCEC 57351682 + 57351662 57351702 41 TGACATTATGCTGGATGAAGGAATGCTGCAGTCATTAATGG TGACATTATGCTGGATGAATGAATGCTGCAGTCATTAATGG < 41bp 0.567028868506442 0.839482776092289 NA NA prediction 0.544907815171693 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57351682 chr1:57351681 stopgain 0.997 1 20 hm7G_associated_SNPs_17785 0 0 0 0 1 C8A chr1:57351600 3'AG 57351600 Downstream 82bp 16806 chr5 55075872 55075872 1 + G T COAD 55075873 + 55075853 55075893 41 TTTCCGAGGTTGCCGTGGAGGATTTGGTCTAGGAAGTCCAA TTTCCGAGGTTGCCGTGGATGATTTGGTCTAGGAAGTCCAA < 41bp 0.558934042075194 0.831382457311994 NA NA prediction 0.544896830473601 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55075873 chr5:55075872 stopgain 1.000 0 20 hm7G_associated_SNPs_17786 0 0 0 0 2 DDX4 chr5:55075792 3'AG 55075792 Downstream 81bp 16807 chr5 55075872 55075872 1 + G T COAD 55075873 + 55075853 55075893 41 TTTCCGAGGTTGCCGTGGAGGATTTGGTCTAGGAAGTCCAA TTTCCGAGGTTGCCGTGGATGATTTGGTCTAGGAAGTCCAA < 41bp 0.558934042075194 0.831382457311994 NA NA prediction 0.544896830473601 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55075873 chr5:55075872 stopgain 1.000 0 20 hm7G_associated_SNPs_17786 0 0 0 0 2 DDX4 chr5:55075893 5'GT 55075893 Upstream 22bp 16808 chr19 45322968 45322968 1 + G T KIRP 45322969 + 45322949 45322989 41 CCCTGCTGCCGCCAGCGGCGGGAGAAGGGGGCTCCGTGAGT CCCTGCTGCCGCCAGCGGCTGGAGAAGGGGGCTCCGTGAGT < 41bp 0.576029688498251 0.848475701229564 NA NA prediction 0.544892025462626 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45322969 chr19:45322968 nonsynonymous SNV 0.175 0 20 hm7G_associated_SNPs_17787 0 0 1 0 1 BCAM chr19:45322983 5'GT 45322983 Upstream 16bp 16809 chr18 72180861 72180861 1 + G T LUAD 72180862 + 72180842 72180882 41 AGGCCGTGGCCGCCGTCACGGAAGAGGAGCACAAGCTGTAC AGGCCGTGGCCGCCGTCACTGAAGAGGAGCACAAGCTGTAC < 41bp 0.591884922946489 0.864318234857551 NA NA prediction 0.544866623822124 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72180862 chr18:72180861 synonymous SNV . 0 20 hm7G_associated_SNPs_17788 0 0 1 0 2 CNDP2 chr18:72180794 3'AG 72180794 Downstream 68bp 16810 chr18 72180861 72180861 1 + G T LUAD 72180862 + 72180842 72180882 41 AGGCCGTGGCCGCCGTCACGGAAGAGGAGCACAAGCTGTAC AGGCCGTGGCCGCCGTCACTGAAGAGGAGCACAAGCTGTAC < 41bp 0.591884922946489 0.864318234857551 NA NA prediction 0.544866623822124 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72180862 chr18:72180861 synonymous SNV . 0 20 hm7G_associated_SNPs_17788 0 0 1 0 2 CNDP2 chr18:72180954 5'GT 72180954 Upstream 94bp 16811 chr6 36884343 36884343 1 + G T SKCM 36884344 + 36884324 36884364 41 CACCCAGAACCTGTTGTGGGGAGTAAGGTAGGAAATTTTGA CACCCAGAACCTGTTGTGGTGAGTAAGGTAGGAAATTTTGA < 41bp 0.459513237308995 0.772402005232344 NA NA prediction 0.544804010464688 Functional Gain - C6orf89 ENSG00000198663 CDS Human protein_coding chr6:36884344 chr6:36884343 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_17792 0 0 1 0 1 C6orf89 chr6:36884350 5'GT 36884350 Upstream 8bp 16812 chr1 110022029 110022029 1 + G T LUSC 110022030 + 110022010 110022050 41 TTATCAACTTCTTCCTGTGGGCCGGGAACTGTTGGTTTGTG TTATCAACTTCTTCCTGTGTGCCGGGAACTGTTGGTTTGTG < 41bp 0.52508291579797 0.797470188492156 NA NA prediction 0.544774545388373 Functional Gain - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110022030 chr1:110022029 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17793 0 0 0 0 1 SYPL2 chr1:110022000 3'AG 110022000 Downstream 30bp 16813 chr17 34313665 34313665 1 + G T COAD 34313666 + 34313646 34313686 41 TGAGGAGGAAGAAGGGAATGGCAGCCACGGAGATCTTCATG TGAGGAGGAAGAAGGGAATTGCAGCCACGGAGATCTTCATG < 41bp 0.460662192177725 0.772378239667283 NA NA prediction 0.544756479334566 Functional Gain - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313666 chr17:34313665 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_17794 0 0 0 0 1 CCL15-CCL14 chr17:34313570 3'AG 34313570 Downstream 96bp 16814 chr1 156845920 156845920 1 + G T UCEC 156845921 + 156845901 156845941 41 GTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGGAAGGT GTGCTCAAGTGGGAGCTGGTGGAGGGCGCCTTTGGGAAGGT < 41bp 0.435605393379293 0.772362348440772 NA NA prediction 0.544724696881545 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845921 chr1:156845920 nonsynonymous SNV 0.954 5 20 hm7G_associated_SNPs_17796 0 0 1 0 3 NTRK1 chr1:156845863 3'AG 156845863 Downstream 58bp 16815 chr1 156845920 156845920 1 + G T UCEC 156845921 + 156845901 156845941 41 GTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGGAAGGT GTGCTCAAGTGGGAGCTGGTGGAGGGCGCCTTTGGGAAGGT < 41bp 0.435605393379293 0.772362348440772 NA NA prediction 0.544724696881545 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845921 chr1:156845920 nonsynonymous SNV 0.954 5 20 hm7G_associated_SNPs_17796 0 0 1 0 3 NTRK1 chr1:156845872 3'AG 156845872 Downstream 49bp 16816 chr1 156845920 156845920 1 + G T UCEC 156845921 + 156845901 156845941 41 GTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGGAAGGT GTGCTCAAGTGGGAGCTGGTGGAGGGCGCCTTTGGGAAGGT < 41bp 0.435605393379293 0.772362348440772 NA NA prediction 0.544724696881545 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845921 chr1:156845920 nonsynonymous SNV 0.954 5 20 hm7G_associated_SNPs_17796 0 0 1 0 3 NTRK1 chr1:156846002 5'GT 156846002 Upstream 83bp 16817 chr2 234969063 234969063 1 + G T LUAD 234969064 + 234969044 234969084 41 TATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCGCTGCAGC TATCTGCCCAGCAGGTGCATGGCGTGCATGCTCGCTGCAGC < 41bp 0.584187564725158 0.856543348266025 NA NA prediction 0.544711567081734 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234969064 chr2:234969063 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_17798 0 0 0 0 2 SPP2 chr2:234969013 3'AG 234969013 Downstream 51bp 16818 chr2 234969063 234969063 1 + G T LUAD 234969064 + 234969044 234969084 41 TATCTGCCCAGCAGGTGCAGGGCGTGCATGCTCGCTGCAGC TATCTGCCCAGCAGGTGCATGGCGTGCATGCTCGCTGCAGC < 41bp 0.584187564725158 0.856543348266025 NA NA prediction 0.544711567081734 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234969064 chr2:234969063 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_17798 0 0 0 0 2 SPP2 chr2:234969123 5'GT 234969123 Upstream 61bp 16819 chr5 82400810 82400810 1 + G T CESC 82400811 + 82400791 82400831 41 ATTTTCTACAAGTATCTTGGGAGAAAACACTGGAATCTGGT ATTTTCTACAAGTATCTTGTGAGAAAACACTGGAATCTGGT < 41bp 0.548053868655787 0.820400535054833 NA NA prediction 0.544693332798091 Functional Gain - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82400811 chr5:82400810 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_17799 0 0 0 0 2 XRCC4 chr5:82400729 3'AG 82400729 Downstream 82bp 16820 chr5 82400810 82400810 1 + G T CESC 82400811 + 82400791 82400831 41 ATTTTCTACAAGTATCTTGGGAGAAAACACTGGAATCTGGT ATTTTCTACAAGTATCTTGTGAGAAAACACTGGAATCTGGT < 41bp 0.548053868655787 0.820400535054833 NA NA prediction 0.544693332798091 Functional Gain - XRCC4 ENSG00000152422 CDS Human protein_coding chr5:82400811 chr5:82400810 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_17799 0 0 0 0 2 XRCC4 chr5:82400877 5'GT 82400877 Upstream 68bp 16821 chr17 72287263 72287263 1 + G T BRCA 72287264 + 72287244 72287284 41 CCTGGGTGGCTGCTACAATGGACAGATAGGTAAGGAGGGAC CCTGGGTGGCTGCTACAATTGACAGATAGGTAAGGAGGGAC < 41bp 0.585226560373957 0.857561862699408 NA NA prediction 0.544670604650901 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72287264 chr17:72287263 stopgain 0.988 1 20 hm7G_associated_SNPs_17800 0 0 0 1 1 DNAI2 chr17:72287272 5'GT 72287272 Upstream 10bp 16822 chr7 123514854 123514854 1 + G T LUAD 123514855 + 123514835 123514875 41 AGGAGAAAGTGCTGCCTTGGGAGCTGCAGGCATTGTTATTT AGGAGAAAGTGCTGCCTTGTGAGCTGCAGGCATTGTTATTT < 41bp 0.454571492026445 0.77232460815865 NA NA prediction 0.544649216317301 Functional Gain - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123514855 chr7:123514854 stopgain 1.000 1 20 hm7G_associated_SNPs_17801 0 0 0 0 2 HYAL4 chr7:123514815 3'AG 123514815 Downstream 40bp 16823 chr7 123514854 123514854 1 + G T LUAD 123514855 + 123514835 123514875 41 AGGAGAAAGTGCTGCCTTGGGAGCTGCAGGCATTGTTATTT AGGAGAAAGTGCTGCCTTGTGAGCTGCAGGCATTGTTATTT < 41bp 0.454571492026445 0.77232460815865 NA NA prediction 0.544649216317301 Functional Gain - HYAL4 ENSG00000106302 CDS Human protein_coding chr7:123514855 chr7:123514854 stopgain 1.000 1 20 hm7G_associated_SNPs_17801 0 0 0 0 2 HYAL4 chr7:123514904 5'GT 123514904 Upstream 51bp 16824 chr2 33036125 33036125 1 + G T ACC 33036126 + 33036106 33036146 41 GTCAGGGCAGTGATTGATGGGATGACTGATCGAAGTGGAGA GTCAGGGCAGTGATTGATGTGATGACTGATCGAAGTGGAGA < 41bp 0.575233470621398 0.84754297476527 NA NA prediction 0.544619008287744 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33036126 chr2:33036125 nonsynonymous SNV 0.643 1 20 hm7G_associated_SNPs_17802 0 0 1 0 1 TTC27 chr2:33036091 3'AG 33036091 Downstream 35bp 16825 chr1 156836765 156836765 1 + G T UCEC 156836766 + 156836746 156836786 41 TGCAGGGCCTCTCCTTACAGGAACTGTGAGTGGGGGCGCTT TGCAGGGCCTCTCCTTACATGAACTGTGAGTGGGGGCGCTT < 41bp 0.591903320773966 0.864210029304926 NA NA prediction 0.544613417061919 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156836766 chr1:156836765 nonsynonymous SNV 0.936 0 20 hm7G_associated_SNPs_17803 0 0 0 0 2 NTRK1 chr1:156836702 3'AG 156836702 Downstream 64bp 16826 chr1 156836765 156836765 1 + G T UCEC 156836766 + 156836746 156836786 41 TGCAGGGCCTCTCCTTACAGGAACTGTGAGTGGGGGCGCTT TGCAGGGCCTCTCCTTACATGAACTGTGAGTGGGGGCGCTT < 41bp 0.591903320773966 0.864210029304926 NA NA prediction 0.544613417061919 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156836766 chr1:156836765 nonsynonymous SNV 0.936 0 20 hm7G_associated_SNPs_17803 0 0 0 0 2 NTRK1 chr1:156836770 5'GT 156836770 Upstream 6bp 16827 chr17 53155504 53155504 1 + G T LUSC 53155505 + 53155485 53155525 41 AATTACGAAAATCAGAAATGGCTCGAAAAACTTTTGAGGCA AATTACGAAAATCAGAAATTGCTCGAAAAACTTTTGAGGCA < 41bp 0.469333828239002 0.772292578161423 NA NA prediction 0.544585156322845 Functional Gain - STXBP4 ENSG00000166263 CDS Human protein_coding chr17:53155505 chr17:53155504 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17805 0 0 1 0 2 STXBP4 chr17:53155439 3'AG 53155439 Downstream 66bp 16828 chr17 53155504 53155504 1 + G T LUSC 53155505 + 53155485 53155525 41 AATTACGAAAATCAGAAATGGCTCGAAAAACTTTTGAGGCA AATTACGAAAATCAGAAATTGCTCGAAAAACTTTTGAGGCA < 41bp 0.469333828239002 0.772292578161423 NA NA prediction 0.544585156322845 Functional Gain - STXBP4 ENSG00000166263 CDS Human protein_coding chr17:53155505 chr17:53155504 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17805 0 0 1 0 2 STXBP4 chr17:53155555 5'GT 53155555 Upstream 52bp 16829 chr1 245775266 245775266 1 + G T LUSC 245775267 + 245775247 245775287 41 GTACCGGATGGAGAAGAGCGGGAAAGGGGGAAGTAAGTCGG GTACCGGATGGAGAAGAGCTGGAAAGGGGGAAGTAAGTCGG < 41bp 0.463990880323931 0.772277723166276 NA NA prediction 0.544555446332552 Functional Gain - KIF26B ENSG00000162849 CDS Human protein_coding chr1:245775267 chr1:245775266 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_17808 0 0 0 0 1 KIF26B chr1:245775278 5'GT 245775278 Upstream 13bp 16830 chr7 34884511 34884511 1 + G T LUSC 34884512 + 34884492 34884532 41 CCTCTTGTATCTACAGATGGGAAACTGTGCAGCAGCTATAA CCTCTTGTATCTACAGATGTGAAACTGTGCAGCAGCTATAA < 41bp 0.558887858526887 0.831164083433573 NA NA prediction 0.544552449813372 Functional Gain - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34884512 chr7:34884511 nonsynonymous SNV 0.752 2 20 hm7G_associated_SNPs_17810 0 0 0 0 2 NPSR1 chr7:34884508 3'AG 34884508 Downstream 4bp 16831 chr7 34884511 34884511 1 + G T LUSC 34884512 + 34884492 34884532 41 CCTCTTGTATCTACAGATGGGAAACTGTGCAGCAGCTATAA CCTCTTGTATCTACAGATGTGAAACTGTGCAGCAGCTATAA < 41bp 0.558887858526887 0.831164083433573 NA NA prediction 0.544552449813372 Functional Gain - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34884512 chr7:34884511 nonsynonymous SNV 0.752 2 20 hm7G_associated_SNPs_17810 0 0 0 0 2 NPSR1 chr7:34884594 5'GT 34884594 Upstream 84bp 16832 chr22 38875643 38875643 1 + G T SKCM 38875644 + 38875624 38875664 41 TACAGTGTACATGATATATGGGAAATTCCGTAAAACTTTTG TACAGTGTACATGATATATTGGAAATTCCGTAAAACTTTTG < 41bp 0.579687236682417 0.851950572883064 NA NA prediction 0.544526672401295 Functional Gain - KDELR3 ENSG00000100196 CDS Human protein_coding chr22:38875644 chr22:38875643 nonsynonymous SNV 0.904 0 20 hm7G_associated_SNPs_17811 0 0 0 0 1 KDELR3 chr22:38875598 3'AG 38875598 Downstream 46bp 16833 chr7 150839046 150839046 1 + G T UCEC 150839047 + 150839027 150839067 41 GGCAGACGTGGCACTTCGAGGCTTCAACGGCGGAGGAGCGG GGCAGACGTGGCACTTCGATGCTTCAACGGCGGAGGAGCGG < 41bp 0.586844985332193 0.859106761823995 NA NA prediction 0.544523552983604 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150839047 chr7:150839046 nonsynonymous SNV 0.120 4 20 hm7G_associated_SNPs_17812 0 0 1 0 2 AGAP3 chr7:150838985 3'AG 150838985 Downstream 62bp 16834 chr7 150839046 150839046 1 + G T UCEC 150839047 + 150839027 150839067 41 GGCAGACGTGGCACTTCGAGGCTTCAACGGCGGAGGAGCGG GGCAGACGTGGCACTTCGATGCTTCAACGGCGGAGGAGCGG < 41bp 0.586844985332193 0.859106761823995 NA NA prediction 0.544523552983604 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150839047 chr7:150839046 nonsynonymous SNV 0.120 4 20 hm7G_associated_SNPs_17812 0 0 1 0 2 AGAP3 chr7:150839139 5'GT 150839139 Upstream 94bp 16835 chr18 47101900 47101900 1 + G T LUAD 47101901 + 47101881 47101921 41 CATTGACATCTACCCCAATGGGGGTGACTTCCAGCCAGGCT CATTGACATCTACCCCAATTGGGGTGACTTCCAGCCAGGCT < 41bp 0.437535326077031 0.772259542534486 NA NA prediction 0.544519085068972 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101901 chr18:47101900 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_17813 0 0 0 0 1 LIPG chr18:47101960 5'GT 47101960 Upstream 61bp 16836 chr16 31121591 31121591 1 + G T UCEC 31121592 + 31121572 31121612 41 AGCTGCTGGATGACCACAAGGATGTGGTGACCCTCTTGGCA AGCTGCTGGATGACCACAATGATGTGGTGACCCTCTTGGCA < 41bp 0.435808492601733 0.772250565810136 NA NA prediction 0.544501131620272 Functional Gain - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121592 chr16:31121591 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17815 0 0 1 2 2 BCKDK chr16:31121526 3'AG 31121526 Downstream 66bp 16837 chr16 31121591 31121591 1 + G T UCEC 31121592 + 31121572 31121612 41 AGCTGCTGGATGACCACAAGGATGTGGTGACCCTCTTGGCA AGCTGCTGGATGACCACAATGATGTGGTGACCCTCTTGGCA < 41bp 0.435808492601733 0.772250565810136 NA NA prediction 0.544501131620272 Functional Gain - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121592 chr16:31121591 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17815 0 0 1 2 2 BCKDK chr16:31121645 5'GT 31121645 Upstream 55bp 16838 chr1 6269374 6269374 1 + G T LUAD 6269375 + 6269355 6269395 41 GGAATCGGCTTACGTGCAGGGCTGCGAGCGGCTGGAGCAGG GGAATCGGCTTACGTGCAGTGCTGCGAGCGGCTGGAGCAGG < 41bp 0.595108171716536 0.867320967293919 NA NA prediction 0.544425591154766 Functional Gain - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6269375 chr1:6269374 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_17820 0 0 1 0 2 RNF207 chr1:6269328 3'AG 6269328 Downstream 47bp 16839 chr1 6269374 6269374 1 + G T LUAD 6269375 + 6269355 6269395 41 GGAATCGGCTTACGTGCAGGGCTGCGAGCGGCTGGAGCAGG GGAATCGGCTTACGTGCAGTGCTGCGAGCGGCTGGAGCAGG < 41bp 0.595108171716536 0.867320967293919 NA NA prediction 0.544425591154766 Functional Gain - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6269375 chr1:6269374 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_17820 0 0 1 0 2 RNF207 chr1:6269403 5'GT 6269403 Upstream 30bp 16840 chr6 348265 348265 1 + G T LUSC 348266 + 348246 348286 41 AGGAGTTTGAGAAGCATGAGGTCCATCAGGTAAGCAGTTCT AGGAGTTTGAGAAGCATGATGTCCATCAGGTAAGCAGTTCT < 41bp 0.450818954814275 0.772211582424729 NA NA prediction 0.544423164849458 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:348266 chr6:348265 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_17821 0 0 0 0 1 DUSP22 chr6:348274 5'GT 348274 Upstream 10bp 16841 chr19 52856958 52856958 1 + G T LUAD 52856959 + 52856939 52856979 41 GCTTGACATTCATGGACGTGGCCATCGAATTCTCTCAGGAG GCTTGACATTCATGGACGTTGCCATCGAATTCTCTCAGGAG < 41bp 0.441098754791145 0.772185581235753 NA NA prediction 0.544371162471507 Functional Gain - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52856959 chr19:52856958 synonymous SNV . 0 20 hm7G_associated_SNPs_17825 0 0 0 0 1 ZNF610 chr19:52856935 3'AG 52856935 Downstream 24bp 16842 chr12 88548080 88548080 1 + G T LUAD 88548081 + 88548061 88548101 41 CTAGGTAACAGGAGTTGTTGGAAGAGCAGAACTTTTGTCAT CTAGGTAACAGGAGTTGTTTGAAGAGCAGAACTTTTGTCAT < 41bp 0.479556879808663 0.772185271369553 NA NA prediction 0.544370542739106 Functional Gain - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88548081 chr12:88548080 stopgain 1.000 1 20 hm7G_associated_SNPs_17826 0 0 1 0 2 TMTC3 chr12:88548065 3'AG 88548065 Downstream 16bp 16843 chr12 88548080 88548080 1 + G T LUAD 88548081 + 88548061 88548101 41 CTAGGTAACAGGAGTTGTTGGAAGAGCAGAACTTTTGTCAT CTAGGTAACAGGAGTTGTTTGAAGAGCAGAACTTTTGTCAT < 41bp 0.479556879808663 0.772185271369553 NA NA prediction 0.544370542739106 Functional Gain - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88548081 chr12:88548080 stopgain 1.000 1 20 hm7G_associated_SNPs_17826 0 0 1 0 2 TMTC3 chr12:88548164 5'GT 88548164 Upstream 85bp 16844 chr17 30815061 30815061 1 + G T LUSC 30815062 + 30815042 30815082 41 CCGCAGGGACGCCCAAACGGGTCATCGTCCAGGCGTCCACC CCGCAGGGACGCCCAAACGTGTCATCGTCCAGGCGTCCACC < 41bp 0.583373443157736 0.855528699788508 NA NA prediction 0.544310513261544 Functional Gain - CDK5R1 ENSG00000176749 CDS Human protein_coding chr17:30815062 chr17:30815061 synonymous SNV . 0 20 hm7G_associated_SNPs_17828 0 0 0 0 1 CDK5R1 chr17:30815104 5'GT 30815104 Upstream 44bp 16845 chr2 58362312 58362312 1 + G T STAD 58362313 + 58362293 58362333 41 CCCAGTCAGTGCTTAAATGGGCTCCTTCTGGAAGCAGTTGC CCCAGTCAGTGCTTAAATGTGCTCCTTCTGGAAGCAGTTGC < 41bp 0.455651175121666 0.772114766911345 NA NA prediction 0.54422953382269 Functional Gain - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58362313 chr2:58362312 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17831 0 0 1 0 2 VRK2 chr2:58362276 3'AG 58362276 Downstream 37bp 16846 chr2 58362312 58362312 1 + G T STAD 58362313 + 58362293 58362333 41 CCCAGTCAGTGCTTAAATGGGCTCCTTCTGGAAGCAGTTGC CCCAGTCAGTGCTTAAATGTGCTCCTTCTGGAAGCAGTTGC < 41bp 0.455651175121666 0.772114766911345 NA NA prediction 0.54422953382269 Functional Gain - VRK2 ENSG00000028116 CDS Human protein_coding chr2:58362313 chr2:58362312 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_17831 0 0 1 0 2 VRK2 chr2:58362334 5'GT 58362334 Upstream 23bp 16847 chr9 113562632 113562632 1 + G T LUAD 113562633 + 113562613 113562653 41 GCCTGCTCTTTGAATACATGGCCTATGGTGACCTCAATGAG GCCTGCTCTTTGAATACATTGCCTATGGTGACCTCAATGAG < 41bp 0.450966811857708 0.772102592203748 NA NA prediction 0.544205184407496 Functional Gain - MUSK ENSG00000030304 CDS Human protein_coding chr9:113562633 chr9:113562632 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_17832 0 0 0 0 1 MUSK chr9:113562586 3'AG 113562586 Downstream 47bp 16848 chr6 161160172 161160172 1 + G T UCEC 161160173 + 161160153 161160193 41 ATCTCGAACCGCATGTTCAGGAAATAGAAGTGTCTAGGCTG ATCTCGAACCGCATGTTCATGAAATAGAAGTGTCTAGGCTG < 41bp 0.454260888210105 0.772096546301558 NA NA prediction 0.544193092603116 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161160173 chr6:161160172 nonsynonymous SNV 0.040 4 20 hm7G_associated_SNPs_17834 0 0 0 0 2 PLG chr6:161160100 3'AG 161160100 Downstream 73bp 16849 chr6 161160172 161160172 1 + G T UCEC 161160173 + 161160153 161160193 41 ATCTCGAACCGCATGTTCAGGAAATAGAAGTGTCTAGGCTG ATCTCGAACCGCATGTTCATGAAATAGAAGTGTCTAGGCTG < 41bp 0.454260888210105 0.772096546301558 NA NA prediction 0.544193092603116 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161160173 chr6:161160172 nonsynonymous SNV 0.040 4 20 hm7G_associated_SNPs_17834 0 0 0 0 2 PLG chr6:161160240 5'GT 161160240 Upstream 69bp 16850 chr8 37595525 37595525 1 + G T UCEC 37595526 + 37595506 37595546 41 TGTGCACAAGATAGAAGAGGGACATATTGGGGTATATTACA TGTGCACAAGATAGAAGAGTGACATATTGGGGTATATTACA < 41bp 0.45054889904222 0.772094101255614 NA NA prediction 0.544188202511229 Functional Gain - ERLIN2 ENSG00000147475 CDS Human protein_coding chr8:37595526 chr8:37595525 stopgain 1.000 1 20 hm7G_associated_SNPs_17835 0 0 1 0 2 ERLIN2 chr8:37595426 3'AG 37595426 Downstream 100bp 16851 chr8 37595525 37595525 1 + G T UCEC 37595526 + 37595506 37595546 41 TGTGCACAAGATAGAAGAGGGACATATTGGGGTATATTACA TGTGCACAAGATAGAAGAGTGACATATTGGGGTATATTACA < 41bp 0.45054889904222 0.772094101255614 NA NA prediction 0.544188202511229 Functional Gain - ERLIN2 ENSG00000147475 CDS Human protein_coding chr8:37595526 chr8:37595525 stopgain 1.000 1 20 hm7G_associated_SNPs_17835 0 0 1 0 2 ERLIN2 chr8:37595547 5'GT 37595547 Upstream 23bp 16852 chr4 86491764 86491764 1 + G T LUAD 86491765 + 86491745 86491785 41 GCAGAATGCCATCAAGTGTGGGTGGCTGAGGAAGCAAGGAG GCAGAATGCCATCAAGTGTTGGTGGCTGAGGAAGCAAGGAG < 41bp 0.463895556518319 0.772086615686824 NA NA prediction 0.544173231373648 Functional Gain - ARHGAP24 ENSG00000138639 CDS Human protein_coding chr4:86491765 chr4:86491764 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17836 0 0 1 0 1 ARHGAP24 chr4:86491675 3'AG 86491675 Downstream 90bp 16853 chr20 31894731 31894731 1 + G T LUSC 31894732 + 31894712 31894752 41 TTCAGGCAAATTAAGATCTGGGGTCCCAGTGTCATTGGTGA TTCAGGCAAATTAAGATCTTGGGTCCCAGTGTCATTGGTGA < 41bp 0.446970073987296 0.772082916976325 NA NA prediction 0.54416583395265 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31894732 chr20:31894731 nonsynonymous SNV 0.009 4 20 hm7G_associated_SNPs_17837 0 0 0 1 2 BPIFB1 chr20:31894717 3'AG 31894717 Downstream 15bp 16854 chr20 31894731 31894731 1 + G T LUSC 31894732 + 31894712 31894752 41 TTCAGGCAAATTAAGATCTGGGGTCCCAGTGTCATTGGTGA TTCAGGCAAATTAAGATCTTGGGTCCCAGTGTCATTGGTGA < 41bp 0.446970073987296 0.772082916976325 NA NA prediction 0.54416583395265 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31894732 chr20:31894731 nonsynonymous SNV 0.009 4 20 hm7G_associated_SNPs_17837 0 0 0 1 2 BPIFB1 chr20:31894793 5'GT 31894793 Upstream 63bp 16855 chr6 25972185 25972185 1 + G T LUSC 25972186 + 25972166 25972206 41 GAAGAGAAGTCTTATCTCTGGAGGCTGGAGAAAGAAGAACA GAAGAGAAGTCTTATCTCTTGAGGCTGGAGAAAGAAGAACA < 41bp 0.529527035460825 0.801594908007415 NA NA prediction 0.54413574509318 Functional Gain - TRIM38 ENSG00000112343 CDS Human protein_coding chr6:25972186 chr6:25972185 nonsynonymous SNV 0.490 2 20 hm7G_associated_SNPs_17839 0 0 1 0 1 TRIM38 chr6:25972097 3'AG 25972097 Downstream 89bp 16856 chr10 75672731 75672731 1 + G T PRAD 75672732 + 75672712 75672752 41 GTCACTTTTACCGAGGAAAGGCCAGCACTGACACCATGGGC GTCACTTTTACCGAGGAAATGCCAGCACTGACACCATGGGC < 41bp 0.592973908633352 0.865016989320199 NA NA prediction 0.544086161373695 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75672732 chr10:75672731 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_17841 0 0 0 0 1 PLAU chr10:75672682 3'AG 75672682 Downstream 50bp 16857 chrX 15711167 15711167 1 + G T UCEC 15711168 + 15711148 15711188 41 AAATGGTTTGGCTGTGATAGGAGTATTTTTAAAGGTAAAAA AAATGGTTTGGCTGTGATATGAGTATTTTTAAAGGTAAAAA < 41bp 0.563303395193871 0.835336252998401 NA NA prediction 0.544065715609059 Functional Gain - CA5BP1 ENSG00000186312 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:15711168 chrX:15711167 . . 0 20 hm7G_associated_SNPs_17843 0 0 0 0 2 CA5BP1 chrX:15711086 3'AG 15711086 Downstream 82bp 16858 chrX 15711167 15711167 1 + G T UCEC 15711168 + 15711148 15711188 41 AAATGGTTTGGCTGTGATAGGAGTATTTTTAAAGGTAAAAA AAATGGTTTGGCTGTGATATGAGTATTTTTAAAGGTAAAAA < 41bp 0.563303395193871 0.835336252998401 NA NA prediction 0.544065715609059 Functional Gain - CA5BP1 ENSG00000186312 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:15711168 chrX:15711167 . . 0 20 hm7G_associated_SNPs_17843 0 0 0 0 2 CA5BP1 chrX:15711181 5'GT 15711181 Upstream 15bp 16859 chr1 99164344 99164344 1 + G T UCEC 99164345 + 99164325 99164365 41 ATCTGGTTGATACTCTAAAGGATGTTGCCAGCTGCATTGAC ATCTGGTTGATACTCTAAATGATGTTGCCAGCTGCATTGAC < 41bp 0.571988085429024 0.844009180504449 NA NA prediction 0.54404219015085 Functional Gain - SNX7 ENSG00000162627 CDS Human protein_coding chr1:99164345 chr1:99164344 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_17846 0 0 1 0 1 SNX7 chr1:99164262 3'AG 99164262 Downstream 83bp 16860 chr19 22782316 22782316 1 + G T UCEC 22782317 + 22782297 22782337 41 AGAGCCACATGGCAGCAGAGGATGAATCAGATGTCGGAGCA AGAGCCACATGGCAGCAGATGATGAATCAGATGTCGGAGCA < 41bp 0.53550745192529 0.807528504753819 NA NA prediction 0.544042105657058 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22782317 chr19:22782316 . . 0 20 hm7G_associated_SNPs_17847 0 0 0 0 2 GOLGA2P9 chr19:22782231 3'AG 22782231 Downstream 86bp 16861 chr19 22782316 22782316 1 + G T UCEC 22782317 + 22782297 22782337 41 AGAGCCACATGGCAGCAGAGGATGAATCAGATGTCGGAGCA AGAGCCACATGGCAGCAGATGATGAATCAGATGTCGGAGCA < 41bp 0.53550745192529 0.807528504753819 NA NA prediction 0.544042105657058 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22782317 chr19:22782316 . . 0 20 hm7G_associated_SNPs_17847 0 0 0 0 2 GOLGA2P9 chr19:22782338 5'GT 22782338 Upstream 23bp 16862 chr3 46937344 46937344 1 + G T LIHC 46937345 + 46937325 46937365 41 GGACAAGGAGGCACCCACTGGCAGCAGGTACCGAGGTACGT GGACAAGGAGGCACCCACTTGCAGCAGGTACCGAGGTACGT < 41bp 0.594838854550302 0.866859202971833 NA NA prediction 0.544040696843062 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46937345 chr3:46937344 nonsynonymous SNV 0.923 2 20 hm7G_associated_SNPs_17848 0 0 0 0 1 PTH1R chr3:46937359 5'GT 46937359 Upstream 16bp 16863 chr19 1979803 1979803 1 + G T ESCA 1979804 + 1979784 1979824 41 CCCTCCCAGCCTCAGCTCCGGGACAAAACCCAGCCGCACAG CCCTCCCAGCCTCAGCTCCTGGACAAAACCCAGCCGCACAG < 41bp 0.589220194730026 0.861236118972429 NA NA prediction 0.544031848484807 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979804 chr19:1979803 nonsynonymous SNV 0.311 1 20 hm7G_associated_SNPs_17849 0 0 1 0 2 CSNK1G2 chr19:1979751 3'AG 1979751 Downstream 53bp 16864 chr19 1979803 1979803 1 + G T ESCA 1979804 + 1979784 1979824 41 CCCTCCCAGCCTCAGCTCCGGGACAAAACCCAGCCGCACAG CCCTCCCAGCCTCAGCTCCTGGACAAAACCCAGCCGCACAG < 41bp 0.589220194730026 0.861236118972429 NA NA prediction 0.544031848484807 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979804 chr19:1979803 nonsynonymous SNV 0.311 1 20 hm7G_associated_SNPs_17849 0 0 1 0 2 CSNK1G2 chr19:1979834 5'GT 1979834 Upstream 32bp 16865 chr20 61944481 61944481 1 + G T LIHC 61944482 + 61944462 61944502 41 TCCCTAGATCTCTGTCCCAGGGAACCTCGGCACGGCCGTCC TCCCTAGATCTCTGTCCCATGGAACCTCGGCACGGCCGTCC < 41bp 0.434977143250654 0.772015456061721 NA NA prediction 0.544030912123442 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61944482 chr20:61944481 nonsynonymous SNV 0.033 3 20 hm7G_associated_SNPs_17850 0 0 0 0 1 COL20A1 chr20:61944469 3'AG 61944469 Downstream 13bp 16866 chr22 44585079 44585079 1 + G T STAD 44585080 + 44585060 44585100 41 AGCTCACAGTGGTGCTGGAGGCCGTGAACCGGAGTCTGCAG AGCTCACAGTGGTGCTGGATGCCGTGAACCGGAGTCTGCAG < 41bp 0.597501081027534 0.869510145811978 NA NA prediction 0.544018129568889 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44585080 chr22:44585079 nonsynonymous SNV 0.860 0 20 hm7G_associated_SNPs_17853 0 0 0 0 1 PARVG chr22:44584994 3'AG 44584994 Downstream 86bp 16867 chr7 150557663 150557663 1 + G T LUAD 150557664 + 150557644 150557684 41 TACCACCAGAACGACCCCTGGCACCCGCCCGTGGTCTTTGA TACCACCAGAACGACCCCTTGCACCCGCCCGTGGTCTTTGA < 41bp 0.593013477163197 0.865017100074991 NA NA prediction 0.544007245823587 Functional Gain - AOC1 ENSG00000002726 CDS Human protein_coding chr7:150557664 chr7:150557663 nonsynonymous SNV 0.934 4 20 hm7G_associated_SNPs_17854 0 0 0 0 2 AOC1 chr7:150557589 3'AG 150557589 Downstream 75bp 16868 chr7 150557663 150557663 1 + G T LUAD 150557664 + 150557644 150557684 41 TACCACCAGAACGACCCCTGGCACCCGCCCGTGGTCTTTGA TACCACCAGAACGACCCCTTGCACCCGCCCGTGGTCTTTGA < 41bp 0.593013477163197 0.865017100074991 NA NA prediction 0.544007245823587 Functional Gain - AOC1 ENSG00000002726 CDS Human protein_coding chr7:150557664 chr7:150557663 nonsynonymous SNV 0.934 4 20 hm7G_associated_SNPs_17854 0 0 0 0 2 AOC1 chr7:150557721 5'GT 150557721 Upstream 59bp 16869 chrX 48678561 48678561 1 + G T HNSC 48678562 + 48678542 48678582 41 TGGCTTTGATGCTGCACGGGGGGATCCGCTGGGGGGCTGCC TGGCTTTGATGCTGCACGGTGGGATCCGCTGGGGGGCTGCC < 41bp 0.590713986420737 0.862707259260959 NA NA prediction 0.543986545680444 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678562 chrX:48678561 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_17855 0 0 1 0 1 HDAC6 chrX:48678513 3'AG 48678513 Downstream 49bp 16870 chr2 88825981 88825981 1 + G T UCEC 88825982 + 88825962 88826002 41 GTCGACTATCAGCCCTACAGGAAGCACAAATACTCCAGGGT GTCGACTATCAGCCCTACATGAAGCACAAATACTCCAGGGT < 41bp 0.582686888304405 0.854669814453121 NA NA prediction 0.543965852297432 Functional Gain - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88825982 chr2:88825981 nonsynonymous SNV 0.248 1 20 hm7G_associated_SNPs_17857 0 0 0 0 2 TEX37 chr2:88825923 3'AG 88825923 Downstream 59bp 16871 chr2 88825981 88825981 1 + G T UCEC 88825982 + 88825962 88826002 41 GTCGACTATCAGCCCTACAGGAAGCACAAATACTCCAGGGT GTCGACTATCAGCCCTACATGAAGCACAAATACTCCAGGGT < 41bp 0.582686888304405 0.854669814453121 NA NA prediction 0.543965852297432 Functional Gain - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88825982 chr2:88825981 nonsynonymous SNV 0.248 1 20 hm7G_associated_SNPs_17857 0 0 0 0 2 TEX37 chr2:88826015 5'GT 88826015 Upstream 35bp 16872 chr15 85406841 85406841 1 + G T LUSC 85406842 + 85406822 85406862 41 ATCTTCGCAGCAGAAGCCCGGGCCGCGCCTGGCTTTGGGGA ATCTTCGCAGCAGAAGCCCTGGCCGCGCCTGGCTTTGGGGA < 41bp 0.431883875699734 0.771974083866739 NA NA prediction 0.543948167733478 Functional Gain - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85406842 chr15:85406841 nonsynonymous SNV 0.133 3 20 hm7G_associated_SNPs_17859 0 0 0 0 2 ALPK3 chr15:85406783 3'AG 85406783 Downstream 59bp 16873 chr15 85406841 85406841 1 + G T LUSC 85406842 + 85406822 85406862 41 ATCTTCGCAGCAGAAGCCCGGGCCGCGCCTGGCTTTGGGGA ATCTTCGCAGCAGAAGCCCTGGCCGCGCCTGGCTTTGGGGA < 41bp 0.431883875699734 0.771974083866739 NA NA prediction 0.543948167733478 Functional Gain - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85406842 chr15:85406841 nonsynonymous SNV 0.133 3 20 hm7G_associated_SNPs_17859 0 0 0 0 2 ALPK3 chr15:85406871 5'GT 85406871 Upstream 31bp 16874 chr9 96025976 96025976 1 + G T LUAD 96025977 + 96025957 96025997 41 TCCACGCGTGCGCGCTCCCGGCAGGAGAGGGCCAGCCGGCC TCCACGCGTGCGCGCTCCCTGCAGGAGAGGGCCAGCCGGCC < 41bp 0.597214301778115 0.869180758079978 NA NA prediction 0.543932912603726 Functional Gain - WNK2 ENSG00000165238 CDS Human protein_coding chr9:96025977 chr9:96025976 nonsynonymous SNV 0.887 4 20 hm7G_associated_SNPs_17860 0 0 1 0 1 WNK2 chr9:96026016 5'GT 96026016 Upstream 41bp 16875 chr1 33956669 33956669 1 + G T UCEC 33956670 + 33956650 33956690 41 TACCTCCGAGAAAGAGCAAGGACCAGAGTTTTGGGGTCTAA TACCTCCGAGAAAGAGCAATGACCAGAGTTTTGGGGTCTAA < 41bp 0.453579460154174 0.771964690348364 NA NA prediction 0.543929380696728 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33956670 chr1:33956669 stopgain 0.506 0 20 hm7G_associated_SNPs_17861 0 0 0 0 1 ZSCAN20 chr1:33956625 3'AG 33956625 Downstream 45bp 16876 chr14 76549851 76549851 1 + G T CESC 76549852 + 76549832 76549872 41 TCACTGAGGTGTCCTCAGAGGTCCTCACTGAGTGGGACCCA TCACTGAGGTGTCCTCAGATGTCCTCACTGAGTGGGACCCA < 41bp 0.581039865412078 0.852986113481896 NA NA prediction 0.543892496139636 Functional Gain - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76549852 chr14:76549851 nonsynonymous SNV 0.547 4 20 hm7G_associated_SNPs_17864 0 0 0 0 1 IFT43 chr14:76549801 3'AG 76549801 Downstream 51bp 16877 chr12 8628803 8628803 1 + G T LUAD 8628804 + 8628784 8628824 41 GGTAATAATAATTGGCAATGGATTGATAAGACACCTTATGA GGTAATAATAATTGGCAATTGATTGATAAGACACCTTATGA < 41bp 0.556353271904538 0.828289146058365 NA NA prediction 0.543871748307655 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8628804 chr12:8628803 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_17865 0 0 0 0 2 CLEC6A chr12:8628721 3'AG 8628721 Downstream 83bp 16878 chr12 8628803 8628803 1 + G T LUAD 8628804 + 8628784 8628824 41 GGTAATAATAATTGGCAATGGATTGATAAGACACCTTATGA GGTAATAATAATTGGCAATTGATTGATAAGACACCTTATGA < 41bp 0.556353271904538 0.828289146058365 NA NA prediction 0.543871748307655 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8628804 chr12:8628803 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_17865 0 0 0 0 2 CLEC6A chr12:8628836 5'GT 8628836 Upstream 34bp 16879 chr15 20488852 20488852 1 + G T LUSC 20488853 + 20488833 20488873 41 GAAGTTCTTGTTTCTGTTGGGACTGCTGGGTATAACCGTGC GAAGTTCTTGTTTCTGTTGTGACTGCTGGGTATAACCGTGC < 41bp 0.520649748272615 0.792575074429682 NA NA prediction 0.543850652314133 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20488853 chr15:20488852 . . 0 20 hm7G_associated_SNPs_17866 0 0 0 0 1 CHEK2P2 chr15:20488912 5'GT 20488912 Upstream 61bp 16880 chr8 38103797 38103797 1 + G T OV 38103798 + 38103778 38103818 41 CAAATCAGAAAGATTCTTTGGGGGATATTGACAGTGAAAAG CAAATCAGAAAGATTCTTTTGGGGATATTGACAGTGAAAAG < 41bp 0.454993722315932 0.771914358180276 NA NA prediction 0.543828716360551 Functional Gain - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38103798 chr8:38103797 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_17867 0 0 1 0 2 DDHD2 chr8:38103751 3'AG 38103751 Downstream 47bp 16881 chr8 38103797 38103797 1 + G T OV 38103798 + 38103778 38103818 41 CAAATCAGAAAGATTCTTTGGGGGATATTGACAGTGAAAAG CAAATCAGAAAGATTCTTTTGGGGATATTGACAGTGAAAAG < 41bp 0.454993722315932 0.771914358180276 NA NA prediction 0.543828716360551 Functional Gain - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38103798 chr8:38103797 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_17867 0 0 1 0 2 DDHD2 chr8:38103818 5'GT 38103818 Upstream 22bp 16882 chr16 8870208 8870208 1 + G T LUSC 8870209 + 8870189 8870229 41 TCCTCATTCCAGCCCTACCGGATCTTCAACACCTGGCTGGG TCCTCATTCCAGCCCTACCTGATCTTCAACACCTGGCTGGG < 41bp 0.589716122453617 0.861607947529717 NA NA prediction 0.5437836501522 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8870209 chr16:8870208 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_17869 0 0 1 0 1 ABAT chr16:8870201 3'AG 8870201 Downstream 8bp 16883 chr5 161524819 161524819 1 + G T UCEC 161524820 + 161524800 161524840 41 TGGATCACCACCCCCAACAGGATGCTGAGAATTTGGAATGA TGGATCACCACCCCCAACATGATGCTGAGAATTTGGAATGA < 41bp 0.569544977176568 0.841430556697915 NA NA prediction 0.543771159042693 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161524820 chr5:161524819 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_17870 0 0 0 0 1 GABRG2 chr5:161524864 5'GT 161524864 Upstream 46bp 16884 chr2 1459852 1459852 1 + G T BLCA 1459853 + 1459833 1459873 41 TCTCTTCCTACCCAGGTCCGGGAGGTGACAAGACATGTCAT TCTCTTCCTACCCAGGTCCTGGAGGTGACAAGACATGTCAT < 41bp 0.561393894833617 0.833272811434455 NA NA prediction 0.543757833201678 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1459853 chr2:1459852 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_17871 0 0 0 0 1 TPO chr2:1459848 3'AG 1459848 Downstream 5bp 16885 chr7 141765147 141765147 1 + G T HNSC 141765148 + 141765128 141765168 41 CAAGCAGAGCCGTGCAGGAGGTGACGGGACAGCGAGGGGTC CAAGCAGAGCCGTGCAGGATGTGACGGGACAGCGAGGGGTC < 41bp 0.568759856542682 0.840632731456787 NA NA prediction 0.543745749828209 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141765148 chr7:141765147 nonsynonymous SNV 0.888 1 20 hm7G_associated_SNPs_17872 0 0 0 0 1 MGAM chr7:141765135 3'AG 141765135 Downstream 13bp 16886 chr19 4284824 4284824 1 + G T BRCA 4284825 + 4284805 4284845 41 GGACTCCAGGCTCAGCCAAGGAGCTCCGGAGACCTCCGCCC GGACTCCAGGCTCAGCCAATGAGCTCCGGAGACCTCCGCCC < 41bp 0.437849706847485 0.771866079604353 NA NA prediction 0.543732159208707 Functional Gain - SHD ENSG00000105251 CDS Human protein_coding chr19:4284825 chr19:4284824 nonsynonymous SNV 0.873 1 20 hm7G_associated_SNPs_17875 0 0 0 0 2 SHD chr19:4284778 3'AG 4284778 Downstream 47bp 16887 chr19 4284824 4284824 1 + G T BRCA 4284825 + 4284805 4284845 41 GGACTCCAGGCTCAGCCAAGGAGCTCCGGAGACCTCCGCCC GGACTCCAGGCTCAGCCAATGAGCTCCGGAGACCTCCGCCC < 41bp 0.437849706847485 0.771866079604353 NA NA prediction 0.543732159208707 Functional Gain - SHD ENSG00000105251 CDS Human protein_coding chr19:4284825 chr19:4284824 nonsynonymous SNV 0.873 1 20 hm7G_associated_SNPs_17875 0 0 0 0 2 SHD chr19:4284901 5'GT 4284901 Upstream 78bp 16888 chr9 140509440 140509440 1 + G T GBM 140509441 + 140509421 140509461 41 TCCAGAGTACAGTTCTTGGGGCTACCCCTATGGTGAGTCGA TCCAGAGTACAGTTCTTGGTGCTACCCCTATGGTGAGTCGA < 41bp 0.585229611165421 0.857093524242119 NA NA prediction 0.543727826153397 Functional Gain - ARRDC1 ENSG00000197070 CDS Human protein_coding chr9:140509441 chr9:140509440 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_17876 0 0 1 0 1 ARRDC1 chr9:140509452 5'GT 140509452 Upstream 13bp 16889 chr1 156617425 156617425 1 + G T SKCM 156617426 + 156617406 156617446 41 GCTCTATGCCGCCTACCTTGGGGGCTATGAGCAATGTGATG GCTCTATGCCGCCTACCTTTGGGGCTATGAGCAATGTGATG < 41bp 0.427366239010046 0.771863140136913 NA NA prediction 0.543726280273827 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617426 chr1:156617425 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_17877 0 0 0 0 1 BCAN chr1:156617474 5'GT 156617474 Upstream 50bp 16890 chr9 101894966 101894966 1 + G T UCEC 101894967 + 101894947 101894987 41 ATCGCCCTTTTATTTCAGAGGGTACTACGTTGAAAGACTTA ATCGCCCTTTTATTTCAGATGGTACTACGTTGAAAGACTTA < 41bp 0.453505549468738 0.77186137062546 NA NA prediction 0.54372274125092 Functional Gain - TGFBR1 ENSG00000106799 CDS Human protein_coding chr9:101894967 chr9:101894966 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_17879 0 0 1 0 1 TGFBR1 chr9:101895021 5'GT 101895021 Upstream 56bp 16891 chr7 129764317 129764317 1 + G T LUSC 129764318 + 129764298 129764338 41 CATGAAATTGCACATGACGGGCAGAGGATTTACATCTTGGG CATGAAATTGCACATGACGTGCAGAGGATTTACATCTTGGG < 41bp 0.575168944446573 0.847026811255834 NA NA prediction 0.543715733618523 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129764318 chr7:129764317 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_17881 0 0 1 0 2 KLHDC10 chr7:129764291 3'AG 129764291 Downstream 27bp 16892 chr7 129764317 129764317 1 + G T LUSC 129764318 + 129764298 129764338 41 CATGAAATTGCACATGACGGGCAGAGGATTTACATCTTGGG CATGAAATTGCACATGACGTGCAGAGGATTTACATCTTGGG < 41bp 0.575168944446573 0.847026811255834 NA NA prediction 0.543715733618523 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129764318 chr7:129764317 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_17881 0 0 1 0 2 KLHDC10 chr7:129764375 5'GT 129764375 Upstream 59bp 16893 chr11 44074591 44074591 1 + G T UCEC 44074592 + 44074572 44074612 41 TCACTGTGGACAAGTTAGAGGAAGCCCTGCTTGAAGCTAGG TCACTGTGGACAAGTTAGATGAAGCCCTGCTTGAAGCTAGG < 41bp 0.450849977001508 0.77185375527379 NA NA prediction 0.54370751054758 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44074592 chr11:44074591 nonsynonymous SNV 0.021 3 20 hm7G_associated_SNPs_17883 0 0 0 0 2 ACCSL chr11:44074541 3'AG 44074541 Downstream 51bp 16894 chr11 44074591 44074591 1 + G T UCEC 44074592 + 44074572 44074612 41 TCACTGTGGACAAGTTAGAGGAAGCCCTGCTTGAAGCTAGG TCACTGTGGACAAGTTAGATGAAGCCCTGCTTGAAGCTAGG < 41bp 0.450849977001508 0.77185375527379 NA NA prediction 0.54370751054758 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44074592 chr11:44074591 nonsynonymous SNV 0.021 3 20 hm7G_associated_SNPs_17883 0 0 0 0 2 ACCSL chr11:44074618 5'GT 44074618 Upstream 28bp 16895 chr17 72345452 72345452 1 + G T LUAD 72345453 + 72345433 72345473 41 TGGGCGGGGCCAGGCCCGGGGCCGGCAGGATCGGGGTGACA TGGGCGGGGCCAGGCCCGGTGCCGGCAGGATCGGGGTGACA < 41bp 0.423781275156773 0.771853354465185 NA NA prediction 0.54370670893037 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345453 chr17:72345452 nonsynonymous SNV 0.930 1 20 hm7G_associated_SNPs_17884 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 37bp 16896 chr1 111031200 111031200 1 + G T UCEC 111031201 + 111031181 111031221 41 TGATCTGTCGTACTACACAGGCTCCCTGCACTGGATACCCA TGATCTGTCGTACTACACATGCTCCCTGCACTGGATACCCA < 41bp 0.546602643320009 0.818455112475152 NA NA prediction 0.543704938310288 Functional Gain - CYMP;CYMP-AS1 ENSG00000235407;ENSG00000240194 ncRNA_exonic Human other chr1:111031201 chr1:111031200 . . 0 20 hm7G_associated_SNPs_17885 0 0 0 3 2 CYMP;CYMP-AS1 chr1:111031145 3'AG 111031145 Downstream 56bp 16897 chr1 111031200 111031200 1 + G T UCEC 111031201 + 111031181 111031221 41 TGATCTGTCGTACTACACAGGCTCCCTGCACTGGATACCCA TGATCTGTCGTACTACACATGCTCCCTGCACTGGATACCCA < 41bp 0.546602643320009 0.818455112475152 NA NA prediction 0.543704938310288 Functional Gain - CYMP;CYMP-AS1 ENSG00000235407;ENSG00000240194 ncRNA_exonic Human other chr1:111031201 chr1:111031200 . . 0 20 hm7G_associated_SNPs_17885 0 0 0 3 2 CYMP;CYMP-AS1 chr1:111031256 5'GT 111031256 Upstream 57bp 16898 chr6 55142326 55142326 1 + G T ESCA 55142327 + 55142307 55142347 41 GCCAGAAGGAAAACAGCCCGGATGTTGATGATTGTGCTTTT GCCAGAAGGAAAACAGCCCTGATGTTGATGATTGTGCTTTT < 41bp 0.566275247906043 0.838105169658481 NA NA prediction 0.543659843504875 Functional Gain - HCRTR2 ENSG00000137252 CDS Human protein_coding chr6:55142327 chr6:55142326 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_17887 0 0 0 0 1 HCRTR2 chr6:55142398 5'GT 55142398 Upstream 73bp 16899 chr9 730140 730140 1 + G T UCEC 730141 + 730121 730161 41 CCAGCCTGAGCAAGAAGTGGGGACCTCAGAAGGAAAGCCAA CCAGCCTGAGCAAGAAGTGTGGACCTCAGAAGGAAAGCCAA < 41bp 0.476329315937234 0.771819969612722 NA NA prediction 0.543639939225443 Functional Gain - KANK1 ENSG00000107104 CDS Human protein_coding chr9:730141 chr9:730140 nonsynonymous SNV 0.017 2 20 hm7G_associated_SNPs_17888 0 0 1 0 1 KANK1 chr9:730051 3'AG 730051 Downstream 90bp 16900 chr12 7302138 7302138 1 + G T HNSC 7302139 + 7302119 7302159 41 TGACAGACACACGCATGTCGGATGAGATTGTGCACAACCTG TGACAGACACACGCATGTCTGATGAGATTGTGCACAACCTG < 41bp 0.584198539251493 0.855996216027703 NA NA prediction 0.54359535355242 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7302139 chr12:7302138 synonymous SNV . 0 20 hm7G_associated_SNPs_17892 0 0 0 0 1 CLSTN3 chr12:7302119 3'AG 7302119 Downstream 20bp 16901 chr1 153740243 153740243 1 + G T UCEC 153740244 + 153740224 153740264 41 GCCTGATGATGGACATGAAGGCCTGCCAGGAGGACGATGTG GCCTGATGATGGACATGAATGCCTGCCAGGAGGACGATGTG < 41bp 0.594207865394872 0.866001790922014 NA NA prediction 0.543587851054284 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153740244 chr1:153740243 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17893 0 0 1 0 2 INTS3 chr1:153740150 3'AG 153740150 Downstream 94bp 16902 chr1 153740243 153740243 1 + G T UCEC 153740244 + 153740224 153740264 41 GCCTGATGATGGACATGAAGGCCTGCCAGGAGGACGATGTG GCCTGATGATGGACATGAATGCCTGCCAGGAGGACGATGTG < 41bp 0.594207865394872 0.866001790922014 NA NA prediction 0.543587851054284 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153740244 chr1:153740243 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17893 0 0 1 0 2 INTS3 chr1:153740303 5'GT 153740303 Upstream 61bp 16903 chr5 76332464 76332464 1 + G T LIHC 76332465 + 76332445 76332485 41 TGAGAGCTGCAGCAGAAGCGGCTGTATCACAGACTGGATTT TGAGAGCTGCAGCAGAAGCTGCTGTATCACAGACTGGATTT < 41bp 0.573406175513992 0.845180054796457 NA NA prediction 0.54354775856493 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76332465 chr5:76332464 synonymous SNV . 0 20 hm7G_associated_SNPs_17894 0 0 1 1 2 AGGF1 chr5:76332381 3'AG 76332381 Downstream 84bp 16904 chr5 76332464 76332464 1 + G T LIHC 76332465 + 76332445 76332485 41 TGAGAGCTGCAGCAGAAGCGGCTGTATCACAGACTGGATTT TGAGAGCTGCAGCAGAAGCTGCTGTATCACAGACTGGATTT < 41bp 0.573406175513992 0.845180054796457 NA NA prediction 0.54354775856493 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76332465 chr5:76332464 synonymous SNV . 0 20 hm7G_associated_SNPs_17894 0 0 1 1 2 AGGF1 chr5:76332545 5'GT 76332545 Upstream 82bp 16905 chr14 94718090 94718090 1 + G T LUAD 94718091 + 94718071 94718111 41 TGTTGTTGTTTCTAGAATTGGGCCAAGGAAAAAGTTACTGG TGTTGTTGTTTCTAGAATTTGGCCAAGGAAAAAGTTACTGG < 41bp 0.541215116157467 0.812970275644336 NA NA prediction 0.54351031897374 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94718091 chr14:94718090 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_17895 0 0 0 0 1 PPP4R4 chr14:94718086 3'AG 94718086 Downstream 5bp 16906 chr7 152497641 152497641 1 + G T SKCM 152497642 + 152497622 152497662 41 CCATCAGAGAGTCAGCAAAGGTAGTTGACCAAGCTCAAAGG CCATCAGAGAGTCAGCAAATGTAGTTGACCAAGCTCAAAGG < 41bp 0.450036809250968 0.771734226540399 NA NA prediction 0.543468453080797 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152497642 chr7:152497641 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_17896 0 0 1 0 2 ACTR3B chr7:152497616 3'AG 152497616 Downstream 26bp 16907 chr7 152497641 152497641 1 + G T SKCM 152497642 + 152497622 152497662 41 CCATCAGAGAGTCAGCAAAGGTAGTTGACCAAGCTCAAAGG CCATCAGAGAGTCAGCAAATGTAGTTGACCAAGCTCAAAGG < 41bp 0.450036809250968 0.771734226540399 NA NA prediction 0.543468453080797 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152497642 chr7:152497641 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_17896 0 0 1 0 2 ACTR3B chr7:152497740 5'GT 152497740 Upstream 100bp 16908 chr11 66321527 66321527 1 + G T LUSC 66321528 + 66321508 66321548 41 CCCTGCAGAGATTGTTGACGGGAACCTGAAGATGACCCTGG CCCTGCAGAGATTGTTGACTGGAACCTGAAGATGACCCTGG < 41bp 0.56612993278294 0.837863837488457 NA NA prediction 0.543467809411034 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66321528 chr11:66321527 unknown 0.904 2 20 hm7G_associated_SNPs_17897 0 0 0 1 2 ACTN3 chr11:66321516 3'AG 66321516 Downstream 12bp 16909 chr11 66321527 66321527 1 + G T LUSC 66321528 + 66321508 66321548 41 CCCTGCAGAGATTGTTGACGGGAACCTGAAGATGACCCTGG CCCTGCAGAGATTGTTGACTGGAACCTGAAGATGACCCTGG < 41bp 0.56612993278294 0.837863837488457 NA NA prediction 0.543467809411034 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66321528 chr11:66321527 unknown 0.904 2 20 hm7G_associated_SNPs_17897 0 0 0 1 2 ACTN3 chr11:66321602 5'GT 66321602 Upstream 76bp 16910 chr14 24586198 24586198 1 + G T UCEC 24586199 + 24586179 24586219 41 AGGCCCTCTTGGACTCAGAGGAAGAGAATGACAGAGCTTGG AGGCCCTCTTGGACTCAGATGAAGAGAATGACAGAGCTTGG < 41bp 0.583896172054457 0.855622650349928 NA NA prediction 0.543452956590942 Functional Gain - DCAF11 ENSG00000100897 CDS Human protein_coding chr14:24586199 chr14:24586198 stopgain 1.000 1 20 hm7G_associated_SNPs_17899 0 0 1 0 3 DCAF11 chr14:24586126 3'AG 24586126 Downstream 73bp 16911 chr14 24586198 24586198 1 + G T UCEC 24586199 + 24586179 24586219 41 AGGCCCTCTTGGACTCAGAGGAAGAGAATGACAGAGCTTGG AGGCCCTCTTGGACTCAGATGAAGAGAATGACAGAGCTTGG < 41bp 0.583896172054457 0.855622650349928 NA NA prediction 0.543452956590942 Functional Gain - DCAF11 ENSG00000100897 CDS Human protein_coding chr14:24586199 chr14:24586198 stopgain 1.000 1 20 hm7G_associated_SNPs_17899 0 0 1 0 3 DCAF11 chr14:24586181 3'AG 24586181 Downstream 18bp 16912 chr14 24586198 24586198 1 + G T UCEC 24586199 + 24586179 24586219 41 AGGCCCTCTTGGACTCAGAGGAAGAGAATGACAGAGCTTGG AGGCCCTCTTGGACTCAGATGAAGAGAATGACAGAGCTTGG < 41bp 0.583896172054457 0.855622650349928 NA NA prediction 0.543452956590942 Functional Gain - DCAF11 ENSG00000100897 CDS Human protein_coding chr14:24586199 chr14:24586198 stopgain 1.000 1 20 hm7G_associated_SNPs_17899 0 0 1 0 3 DCAF11 chr14:24586253 5'GT 24586253 Upstream 56bp 16913 chr14 58833742 58833742 1 + G T CESC 58833743 + 58833723 58833763 41 AGATTAAAAAAGAAAGACAGGGAAGGTAATTTTATTATGAT AGATTAAAAAAGAAAGACATGGAAGGTAATTTTATTATGAT < 41bp 0.541152319749965 0.812857077711404 NA NA prediction 0.543409515922878 Functional Gain - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58833743 chr14:58833742 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17901 0 0 0 0 1 ARID4A chr14:58833747 5'GT 58833747 Upstream 6bp 16914 chr6 25619691 25619691 1 + G T LUSC 25619692 + 25619672 25619712 41 CAGTTTCAAGGAGAAGCTGGGGCCAGCAGGCCCAGGAGTAT CAGTTTCAAGGAGAAGCTGTGGCCAGCAGGCCCAGGAGTAT < 41bp 0.553345748953337 0.825048002594466 NA NA prediction 0.543404507282258 Functional Gain - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25619692 chr6:25619691 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17902 0 0 0 0 1 CARMIL1 chr6:25619675 3'AG 25619675 Downstream 17bp 16915 chrX 2951115 2951115 1 + G T LGG 2951116 + 2951096 2951136 41 ATTCTACCCTGAAGGAACAGGTGCCTGCTATGGGAGTGGAA ATTCTACCCTGAAGGAACATGTGCCTGCTATGGGAGTGGAA < 41bp 0.562283510416385 0.833965963901822 NA NA prediction 0.543364906970873 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2951116 chrX:2951115 nonsynonymous SNV 0.001 4 20 hm7G_associated_SNPs_17905 0 0 0 0 1 ARSH chrX:2951059 3'AG 2951059 Downstream 57bp 16916 chr1 43825017 43825017 1 + G T LUAD 43825018 + 43824998 43825038 41 CCGGCCCCCTCACCCATGCGGGCCGCCAACCGATCCCACAG CCGGCCCCCTCACCCATGCTGGCCGCCAACCGATCCCACAG < 41bp 0.442063787808035 0.771673475099825 NA NA prediction 0.54334695019965 Functional Gain - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43825018 chr1:43825017 nonsynonymous SNV 0.923 1 20 hm7G_associated_SNPs_17907 0 0 1 0 1 CDC20 chr1:43825067 5'GT 43825067 Upstream 51bp 16917 chr4 108824420 108824420 1 + G T LIHC 108824421 + 108824401 108824441 41 TCTCAGGCAAAAGTTCAACGGATTCTACGATTGATTTCTGG TCTCAGGCAAAAGTTCAACTGATTCTACGATTGATTTCTGG < 41bp 0.457512831914476 0.771665355663225 NA NA prediction 0.543330711326449 Functional Gain - SGMS2 ENSG00000164023 CDS Human protein_coding chr4:108824421 chr4:108824420 nonsynonymous SNV 0.739 4 20 hm7G_associated_SNPs_17908 0 0 1 0 1 SGMS2 chr4:108824389 3'AG 108824389 Downstream 32bp 16918 chr3 191087734 191087734 1 + G T UCEC 191087735 + 191087715 191087755 41 CTCGCCTTTTGCAAGAAAAGGAGTTACAGGAAGAGAAAAAG CTCGCCTTTTGCAAGAAAATGAGTTACAGGAAGAGAAAAAG < 41bp 0.457670406293775 0.771646233166196 NA NA prediction 0.543292466332391 Functional Gain - CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191087735 chr3:191087734 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17909 0 0 1 0 2 CCDC50 chr3:191087708 3'AG 191087708 Downstream 27bp 16919 chr3 191087734 191087734 1 + G T UCEC 191087735 + 191087715 191087755 41 CTCGCCTTTTGCAAGAAAAGGAGTTACAGGAAGAGAAAAAG CTCGCCTTTTGCAAGAAAATGAGTTACAGGAAGAGAAAAAG < 41bp 0.457670406293775 0.771646233166196 NA NA prediction 0.543292466332391 Functional Gain - CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191087735 chr3:191087734 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17909 0 0 1 0 2 CCDC50 chr3:191087825 5'GT 191087825 Upstream 92bp 16920 chr15 57743733 57743733 1 + G T UCEC 57743734 + 57743714 57743754 41 CTGAAGTCAAAGATCTATTGGAACAGAAAAGCAAGTTGACC CTGAAGTCAAAGATCTATTTGAACAGAAAAGCAAGTTGACC < 41bp 0.446161035335045 0.771612538176897 NA NA prediction 0.543225076353794 Functional Gain - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57743734 chr15:57743733 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_17911 0 0 0 0 2 CGNL1 chr15:57743698 3'AG 57743698 Downstream 36bp 16921 chr15 57743733 57743733 1 + G T UCEC 57743734 + 57743714 57743754 41 CTGAAGTCAAAGATCTATTGGAACAGAAAAGCAAGTTGACC CTGAAGTCAAAGATCTATTTGAACAGAAAAGCAAGTTGACC < 41bp 0.446161035335045 0.771612538176897 NA NA prediction 0.543225076353794 Functional Gain - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57743734 chr15:57743733 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_17911 0 0 0 0 2 CGNL1 chr15:57743799 5'GT 57743799 Upstream 67bp 16922 chr12 56489093 56489093 1 + G T LUAD 56489094 + 56489074 56489114 41 ACAAACACTGGTGCTGATCGGGTATGATGGGGTTGGAGATT ACAAACACTGGTGCTGATCTGGTATGATGGGGTTGGAGATT < 41bp 0.57456075685239 0.846172076767783 NA NA prediction 0.543222639830787 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56489094 chr12:56489093 nonsynonymous SNV 0.301 1 20 hm7G_associated_SNPs_17913 0 0 1 0 2 ERBB3 chr12:56489041 3'AG 56489041 Downstream 53bp 16923 chr12 56489093 56489093 1 + G T LUAD 56489094 + 56489074 56489114 41 ACAAACACTGGTGCTGATCGGGTATGATGGGGTTGGAGATT ACAAACACTGGTGCTGATCTGGTATGATGGGGTTGGAGATT < 41bp 0.57456075685239 0.846172076767783 NA NA prediction 0.543222639830787 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56489094 chr12:56489093 nonsynonymous SNV 0.301 1 20 hm7G_associated_SNPs_17913 0 0 1 0 2 ERBB3 chr12:56489094 5'GT 56489094 Upstream 2bp 16924 chr17 47587789 47587789 1 + G T LUAD 47587790 + 47587770 47587810 41 CCAGAGATCCCTGGCCGTTGGATTACACGGTCCACACCCCC CCAGAGATCCCTGGCCGTTTGATTACACGGTCCACACCCCC < 41bp 0.595233716611954 0.866831164520851 NA NA prediction 0.543194895817795 Functional Gain - NGFR ENSG00000064300 CDS Human protein_coding chr17:47587790 chr17:47587789 nonsynonymous SNV 0.977 1 20 hm7G_associated_SNPs_17917 0 0 0 0 1 NGFR chr17:47587774 3'AG 47587774 Downstream 16bp 16925 chr14 67849282 67849282 1 + G T LUSC 67849283 + 67849263 67849303 41 GAGAAGATTGAGGAAAAGAGGGGTGTGTTCAATGTTCAAAT GAGAAGATTGAGGAAAAGATGGGTGTGTTCAATGTTCAAAT < 41bp 0.555030018827253 0.826623319763602 NA NA prediction 0.543186601872697 Functional Gain - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67849283 chr14:67849282 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17918 0 0 1 0 1 EIF2S1 chr14:67849307 5'GT 67849307 Upstream 26bp 16926 chr20 31877784 31877784 1 + G T UCEC 31877785 + 31877765 31877805 41 AGATCCCCCTGGACATGGTGGCTGGATTCAACACGTGAGTG AGATCCCCCTGGACATGGTTGCTGGATTCAACACGTGAGTG < 41bp 0.43926670199385 0.771581684827269 NA NA prediction 0.543163369654537 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877785 chr20:31877784 synonymous SNV . 0 20 hm7G_associated_SNPs_17920 0 0 0 0 2 BPIFB1 chr20:31877691 3'AG 31877691 Downstream 94bp 16927 chr20 31877784 31877784 1 + G T UCEC 31877785 + 31877765 31877805 41 AGATCCCCCTGGACATGGTGGCTGGATTCAACACGTGAGTG AGATCCCCCTGGACATGGTTGCTGGATTCAACACGTGAGTG < 41bp 0.43926670199385 0.771581684827269 NA NA prediction 0.543163369654537 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31877785 chr20:31877784 synonymous SNV . 0 20 hm7G_associated_SNPs_17920 0 0 0 0 2 BPIFB1 chr20:31877798 5'GT 31877798 Upstream 15bp 16928 chr1 173806106 173806106 1 + G T UCEC 173806107 + 173806087 173806127 41 GAGTTTTTAGTACCATCCAGGGAACCTGGAAAGTTTTATTC GAGTTTTTAGTACCATCCATGGAACCTGGAAAGTTTTATTC < 41bp 0.581916046904431 0.853475074820205 NA NA prediction 0.54311805583155 Functional Gain - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173806107 chr1:173806106 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_17922 0 0 1 0 1 DARS2 chr1:173806184 5'GT 173806184 Upstream 79bp 16929 chr4 110902011 110902011 1 + G T SARC 110902012 + 110901992 110902032 41 CTGCTTATATCAAAACGGAGGCTGTGAACATATTTGCAAAA CTGCTTATATCAAAACGGATGCTGTGAACATATTTGCAAAA < 41bp 0.445957553224632 0.771533031207511 NA NA prediction 0.543066062415022 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110902012 chr4:110902011 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_17925 0 0 0 0 1 EGF chr4:110901982 3'AG 110901982 Downstream 30bp 16930 chr11 10793117 10793117 1 + G T STAD 10793118 + 10793098 10793138 41 CAGTTATTTGAGTAAAGTGGGAGATAAAATGAGATTTGATT CAGTTATTTGAGTAAAGTGTGAGATAAAATGAGATTTGATT < 41bp 0.557513298129322 0.829035326025313 NA NA prediction 0.543044055791982 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10793118 chr11:10793117 stopgain 0.999 1 20 hm7G_associated_SNPs_17928 0 0 1 0 2 CTR9 chr11:10793092 3'AG 10793092 Downstream 26bp 16931 chr11 10793117 10793117 1 + G T STAD 10793118 + 10793098 10793138 41 CAGTTATTTGAGTAAAGTGGGAGATAAAATGAGATTTGATT CAGTTATTTGAGTAAAGTGTGAGATAAAATGAGATTTGATT < 41bp 0.557513298129322 0.829035326025313 NA NA prediction 0.543044055791982 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10793118 chr11:10793117 stopgain 0.999 1 20 hm7G_associated_SNPs_17928 0 0 1 0 2 CTR9 chr11:10793163 5'GT 10793163 Upstream 47bp 16932 chr19 45525367 45525367 1 + G T CESC 45525368 + 45525348 45525388 41 CTGCCTGCCTGGTGTGGAAGGACTGGCCTCACCGAGTCCAC CTGCCTGCCTGGTGTGGAATGACTGGCCTCACCGAGTCCAC < 41bp 0.428039359422158 0.77151827129936 NA NA prediction 0.54303654259872 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45525368 chr19:45525367 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17929 0 0 0 0 1 RELB chr19:45525311 3'AG 45525311 Downstream 57bp 16933 chr22 22661365 22661365 1 + G T CESC 22661366 + 22661346 22661386 41 GTGGCTTGGGCAACAGCGAGGGAAATGTTGGATACGTGCAG GTGGCTTGGGCAACAGCGATGGAAATGTTGGATACGTGCAG < 41bp 0.456345559405182 0.771505734433232 NA NA prediction 0.543011468866465 Functional Gain - BMS1P20 ENSG00000272779 ncRNA_exonic Human unprocessed_pseudogene chr22:22661366 chr22:22661365 . . 0 20 hm7G_associated_SNPs_17930 0 0 1 0 1 BMS1P20 chr22:22661386 5'GT 22661386 Upstream 22bp 16934 chr5 6753096 6753096 1 + G T UCEC 6753097 + 6753077 6753117 41 TCCACCACATGTCTTCCCCGGCCATTCCCTCAGCGTCCCCC TCCACCACATGTCTTCCCCTGCCATTCCCTCAGCGTCCCCC < 41bp 0.426589858530391 0.771504933314229 NA NA prediction 0.543009866628458 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6753097 chr5:6753096 synonymous SNV . 0 20 hm7G_associated_SNPs_17931 0 0 1 0 1 PAPD7 chr5:6753150 5'GT 6753150 Upstream 55bp 16935 chr15 66613009 66613009 1 + G T SARC 66613010 + 66612990 66613030 41 AGAATCGGAGATCTGGAAGGGGAAATTGCAACCATCCTGGT AGAATCGGAGATCTGGAAGTGGAAATTGCAACCATCCTGGT < 41bp 0.585165125205334 0.856668959199998 NA NA prediction 0.543007667989329 Functional Gain - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66613010 chr15:66613009 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_17932 0 0 1 0 1 DIS3L chr15:66613070 5'GT 66613070 Upstream 62bp 16936 chr12 32491885 32491885 1 + G T LUAD 32491886 + 32491866 32491906 41 AAGGGCACCGGCTCAGCAAGGAAAAAAGGTTAACCGTGGCT AAGGGCACCGGCTCAGCAATGAAAAAAGGTTAACCGTGGCT < 41bp 0.455258733469753 0.771498468635091 NA NA prediction 0.542996937270183 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32491886 chr12:32491885 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_17933 0 0 0 0 1 BICD1 chr12:32491913 5'GT 32491913 Upstream 29bp 16937 chr11 2943376 2943376 1 + G T SKCM 2943377 + 2943357 2943397 41 AGCTGAGCAGCCACTTCTCGGAGGAGGTGCTGCTCCGGGCC AGCTGAGCAGCCACTTCTCTGAGGAGGTGCTGCTCCGGGCC < 41bp 0.596493226028491 0.867988929065741 NA NA prediction 0.542991406074499 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2943377 chr11:2943376 synonymous SNV . 0 20 hm7G_associated_SNPs_17934 0 0 1 0 2 SLC22A18 chr11:2943332 3'AG 2943332 Downstream 45bp 16938 chr11 2943376 2943376 1 + G T SKCM 2943377 + 2943357 2943397 41 AGCTGAGCAGCCACTTCTCGGAGGAGGTGCTGCTCCGGGCC AGCTGAGCAGCCACTTCTCTGAGGAGGTGCTGCTCCGGGCC < 41bp 0.596493226028491 0.867988929065741 NA NA prediction 0.542991406074499 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2943377 chr11:2943376 synonymous SNV . 0 20 hm7G_associated_SNPs_17934 0 0 1 0 2 SLC22A18 chr11:2943433 5'GT 2943433 Upstream 58bp 16939 chr6 43180941 43180941 1 + G T THYM 43180942 + 43180922 43180962 41 CGGCGACTGCAGTGGACGTGGCTGGGCCGGGCTGAGCTGCA CGGCGACTGCAGTGGACGTTGCTGGGCCGGGCTGAGCTGCA < 41bp 0.423791830899453 0.771487321153645 NA NA prediction 0.542974642307291 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43180942 chr6:43180941 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_17935 0 0 1 0 2 CUL9 chr6:43180887 3'AG 43180887 Downstream 55bp 16940 chr6 43180941 43180941 1 + G T THYM 43180942 + 43180922 43180962 41 CGGCGACTGCAGTGGACGTGGCTGGGCCGGGCTGAGCTGCA CGGCGACTGCAGTGGACGTTGCTGGGCCGGGCTGAGCTGCA < 41bp 0.423791830899453 0.771487321153645 NA NA prediction 0.542974642307291 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43180942 chr6:43180941 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_17935 0 0 1 0 2 CUL9 chr6:43181032 5'GT 43181032 Upstream 92bp 16941 chr5 110407208 110407208 1 + G T UCEC 110407209 + 110407189 110407229 41 GTTTAGGGCAAAGCAAAAAGGAGGAAGGTGAGGGAAATTCC GTTTAGGGCAAAGCAAAAATGAGGAAGGTGAGGGAAATTCC < 41bp 0.493036022412614 0.771432444167779 NA NA prediction 0.542864888335558 Functional Gain - TSLP ENSG00000145777 CDS Human protein_coding chr5:110407209 chr5:110407208 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_17940 0 0 0 1 1 TSLP chr5:110407215 5'GT 110407215 Upstream 8bp 16942 chrX 43599965 43599965 1 + G T UCEC 43599966 + 43599946 43599986 41 GCTCTATGCCAAAGTGCTGGGATCCCAAGAAGCTTTACATG GCTCTATGCCAAAGTGCTGTGATCCCAAGAAGCTTTACATG < 41bp 0.584317949551383 0.855742930400084 NA NA prediction 0.542849961697402 Functional Gain - MAOA ENSG00000189221 CDS Human protein_coding chrX:43599966 chrX:43599965 stopgain 0.932 1 20 hm7G_associated_SNPs_17941 0 0 0 0 2 MAOA chrX:43599928 3'AG 43599928 Downstream 38bp 16943 chrX 43599965 43599965 1 + G T UCEC 43599966 + 43599946 43599986 41 GCTCTATGCCAAAGTGCTGGGATCCCAAGAAGCTTTACATG GCTCTATGCCAAAGTGCTGTGATCCCAAGAAGCTTTACATG < 41bp 0.584317949551383 0.855742930400084 NA NA prediction 0.542849961697402 Functional Gain - MAOA ENSG00000189221 CDS Human protein_coding chrX:43599966 chrX:43599965 stopgain 0.932 1 20 hm7G_associated_SNPs_17941 0 0 0 0 2 MAOA chrX:43599985 5'GT 43599985 Upstream 21bp 16944 chr6 55214903 55214903 1 + G T KIRC 55214904 + 55214884 55214924 41 TTCTAGATAACGTGAAAGAGGATAAATTCAAATGGAATCTA TTCTAGATAACGTGAAAGATGATAAATTCAAATGGAATCTA < 41bp 0.532642615734524 0.804060107188987 NA NA prediction 0.542834982908925 Functional Gain - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55214904 chr6:55214903 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_17942 0 0 0 0 2 GFRAL chr6:55214890 3'AG 55214890 Downstream 14bp 16945 chr6 55214903 55214903 1 + G T KIRC 55214904 + 55214884 55214924 41 TTCTAGATAACGTGAAAGAGGATAAATTCAAATGGAATCTA TTCTAGATAACGTGAAAGATGATAAATTCAAATGGAATCTA < 41bp 0.532642615734524 0.804060107188987 NA NA prediction 0.542834982908925 Functional Gain - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55214904 chr6:55214903 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_17942 0 0 0 0 2 GFRAL chr6:55214943 5'GT 55214943 Upstream 41bp 16946 chr4 72897911 72897911 1 + G T LUAD 72897912 + 72897892 72897932 41 GCCGCCGACAGGGCTCGCCGGGAGAGGTAACAGCATGGGCC GCCGCCGACAGGGCTCGCCTGGAGAGGTAACAGCATGGGCC < 41bp 0.463657070326399 0.77140715865115 NA NA prediction 0.5428143173023 Functional Gain - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:72897912 chr4:72897911 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_17944 0 0 0 0 1 NPFFR2 chr4:72897917 5'GT 72897917 Upstream 7bp 16947 chr3 98489735 98489735 1 + G T OV 98489736 + 98489716 98489756 41 CTCATAGGGTGGCACCTGTGGAAATGAAACGGAGAAATAAG CTCATAGGGTGGCACCTGTTGAAATGAAACGGAGAAATAAG < 41bp 0.577933613112374 0.849333519654494 NA NA prediction 0.542799813084239 Functional Gain - ST3GAL6 ENSG00000064225 CDS Human protein_coding chr3:98489736 chr3:98489735 synonymous SNV . 0 20 hm7G_associated_SNPs_17945 0 0 1 0 1 ST3GAL6 chr3:98489800 5'GT 98489800 Upstream 66bp 16948 chr4 71588406 71588406 1 + G T KIRP 71588407 + 71588387 71588427 41 GTGTCCATGGATGGAGAATGGCTCTGCCTGCGAGAGCTGGA GTGTCCATGGATGGAGAATTGCTCTGCCTGCGAGAGCTGGA < 41bp 0.572220149560258 0.843606336881022 NA NA prediction 0.54277237464153 Functional Gain - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71588407 chr4:71588406 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17947 0 0 1 0 1 RUFY3 chr4:71588468 5'GT 71588468 Upstream 63bp 16949 chr20 10033785 10033785 1 + G T SARC 10033786 + 10033766 10033806 41 GTGCCATGGACGTTGCAAAGGCATATGCTGATTATAGAATA GTGCCATGGACGTTGCAAATGCATATGCTGATTATAGAATA < 41bp 0.565561359945321 0.836939990601197 NA NA prediction 0.54275726131175 Functional Gain - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10033786 chr20:10033785 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_17948 0 0 0 0 1 ANKEF1 chr20:10033760 3'AG 10033760 Downstream 26bp 16950 chr5 35857137 35857137 1 + G T LUAD 35857138 + 35857118 35857158 41 TTTACTTCAAGTCGTTTCTGGAGAAAGTGGCTATGCTCAAA TTTACTTCAAGTCGTTTCTTGAGAAAGTGGCTATGCTCAAA < 41bp 0.54753575747118 0.81890139120902 NA NA prediction 0.542731267475681 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35857138 chr5:35857137 stopgain 1.000 0 20 hm7G_associated_SNPs_17949 0 0 0 0 1 IL7R chr5:35857161 5'GT 35857161 Upstream 25bp 16951 chr2 170592711 170592711 1 + G T HNSC 170592712 + 170592692 170592732 41 GATCCTTTAAAAGAGAAATGGATTCCTATTGCAAACATGAT GATCCTTTAAAAGAGAAATTGATTCCTATTGCAAACATGAT < 41bp 0.477502830508528 0.771355867010119 NA NA prediction 0.542711734020239 Functional Gain - KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170592712 chr2:170592711 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17950 0 0 0 0 1 KLHL23;PHOSPHO2-KLHL23 chr2:170592737 5'GT 170592737 Upstream 27bp 16952 chr20 44665941 44665941 1 + G T BRCA 44665942 + 44665922 44665962 41 GTCTCTGGGCCCAGAGTTTGGGGGTGCCGTGGGCCTCTGCT GTCTCTGGGCCCAGAGTTTTGGGGTGCCGTGGGCCTCTGCT < 41bp 0.433829811919147 0.771352836088118 NA NA prediction 0.542705672176237 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44665942 chr20:44665941 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17951 0 0 0 0 2 SLC12A5 chr20:44665894 3'AG 44665894 Downstream 48bp 16953 chr20 44665941 44665941 1 + G T BRCA 44665942 + 44665922 44665962 41 GTCTCTGGGCCCAGAGTTTGGGGGTGCCGTGGGCCTCTGCT GTCTCTGGGCCCAGAGTTTTGGGGTGCCGTGGGCCTCTGCT < 41bp 0.433829811919147 0.771352836088118 NA NA prediction 0.542705672176237 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44665942 chr20:44665941 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17951 0 0 0 0 2 SLC12A5 chr20:44666024 5'GT 44666024 Upstream 84bp 16954 chr11 60269468 60269468 1 + G T LUAD 60269469 + 60269449 60269489 41 TCCACAGTTTATTATCTCTGGCTCTCTCTCTGTGTCAGCAT TCCACAGTTTATTATCTCTTGCTCTCTCTCTGTGTCAGCAT < 41bp 0.452853998522058 0.771352310262581 NA NA prediction 0.542704620525162 Functional Gain - MS4A12 ENSG00000071203 CDS Human protein_coding chr11:60269469 chr11:60269468 nonsynonymous SNV 0.240 4 20 hm7G_associated_SNPs_17952 0 0 0 0 2 MS4A12 chr11:60269456 3'AG 60269456 Downstream 13bp 16955 chr11 60269468 60269468 1 + G T LUAD 60269469 + 60269449 60269489 41 TCCACAGTTTATTATCTCTGGCTCTCTCTCTGTGTCAGCAT TCCACAGTTTATTATCTCTTGCTCTCTCTCTGTGTCAGCAT < 41bp 0.452853998522058 0.771352310262581 NA NA prediction 0.542704620525162 Functional Gain - MS4A12 ENSG00000071203 CDS Human protein_coding chr11:60269469 chr11:60269468 nonsynonymous SNV 0.240 4 20 hm7G_associated_SNPs_17952 0 0 0 0 2 MS4A12 chr11:60269512 5'GT 60269512 Upstream 45bp 16956 chr18 77455261 77455261 1 + G T LUAD 77455262 + 77455242 77455282 41 TGGAAGGATGCAGCCACCCGGTTGTCATGAAAGGCCTGTGT TGGAAGGATGCAGCCACCCTGTTGTCATGAAAGGCCTGTGT < 41bp 0.439834187781066 0.77132307945179 NA NA prediction 0.542646158903579 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77455262 chr18:77455261 synonymous SNV . 0 20 hm7G_associated_SNPs_17956 0 0 0 0 2 CTDP1 chr18:77455225 3'AG 77455225 Downstream 37bp 16957 chr18 77455261 77455261 1 + G T LUAD 77455262 + 77455242 77455282 41 TGGAAGGATGCAGCCACCCGGTTGTCATGAAAGGCCTGTGT TGGAAGGATGCAGCCACCCTGTTGTCATGAAAGGCCTGTGT < 41bp 0.439834187781066 0.77132307945179 NA NA prediction 0.542646158903579 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77455262 chr18:77455261 synonymous SNV . 0 20 hm7G_associated_SNPs_17956 0 0 0 0 2 CTDP1 chr18:77455308 5'GT 77455308 Upstream 48bp 16958 chr12 106786859 106786859 1 + G T LUAD 106786860 + 106786840 106786880 41 TGCAGATGATTGGAACAGAGGAGCACGTGATGGCTGCATTT TGCAGATGATTGGAACAGATGAGCACGTGATGGCTGCATTT < 41bp 0.583267353674809 0.854557776162608 NA NA prediction 0.542580844975598 Functional Gain - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106786860 chr12:106786859 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17958 0 0 1 0 2 POLR3B chr12:106786809 3'AG 106786809 Downstream 51bp 16959 chr12 106786859 106786859 1 + G T LUAD 106786860 + 106786840 106786880 41 TGCAGATGATTGGAACAGAGGAGCACGTGATGGCTGCATTT TGCAGATGATTGGAACAGATGAGCACGTGATGGCTGCATTT < 41bp 0.583267353674809 0.854557776162608 NA NA prediction 0.542580844975598 Functional Gain - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106786860 chr12:106786859 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17958 0 0 1 0 2 POLR3B chr12:106786931 5'GT 106786931 Upstream 73bp 16960 chr4 89304487 89304487 1 + G T UCEC 89304488 + 89304468 89304508 41 TGGGGAGCTGGTTCTGAAGGGCAGCTGGGGATTGGAGAATT TGGGGAGCTGGTTCTGAAGTGCAGCTGGGGATTGGAGAATT < 41bp 0.447023779314325 0.771265399218014 NA NA prediction 0.542530798436027 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89304488 chr4:89304487 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_17960 0 0 0 0 1 HERC6 chr4:89304532 5'GT 89304532 Upstream 46bp 16961 chr1 104160136 104160136 1 + G T LIHC 104160137 + 104160117 104160157 41 CCAAATACACAACAAGGACGGACATCTATTGTTCATCTGTT CCAAATACACAACAAGGACTGACATCTATTGTTCATCTGTT < 41bp 0.556711353268878 0.827975892673668 NA NA prediction 0.542529078809581 Functional Gain - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104160137 chr1:104160136 nonsynonymous SNV 0.689 3 20 hm7G_associated_SNPs_17961 0 0 0 0 1 AMY2A chr1:104160230 5'GT 104160230 Upstream 95bp 16962 chr19 55598758 55598758 1 + G T ACC 55598759 + 55598739 55598779 41 CGGTGAGCCCCGAGGAGGGGGCACGTGTGTACAGCCAGGTC CGGTGAGCCCCGAGGAGGGTGCACGTGTGTACAGCCAGGTC < 41bp 0.432037725805731 0.771247705867793 NA NA prediction 0.542495411735586 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55598759 chr19:55598758 synonymous SNV . 0 20 hm7G_associated_SNPs_17962 0 0 0 0 2 EPS8L1 chr19:55598671 3'AG 55598671 Downstream 88bp 16963 chr19 55598758 55598758 1 + G T ACC 55598759 + 55598739 55598779 41 CGGTGAGCCCCGAGGAGGGGGCACGTGTGTACAGCCAGGTC CGGTGAGCCCCGAGGAGGGTGCACGTGTGTACAGCCAGGTC < 41bp 0.432037725805731 0.771247705867793 NA NA prediction 0.542495411735586 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55598759 chr19:55598758 synonymous SNV . 0 20 hm7G_associated_SNPs_17962 0 0 0 0 2 EPS8L1 chr19:55598803 5'GT 55598803 Upstream 46bp 16964 chr13 41932952 41932952 1 + G T UCEC 41932953 + 41932933 41932973 41 TTATCTTTTATAGCATATAGGTAATCTCAAAGAAGCTGCAA TTATCTTTTATAGCATATATGTAATCTCAAAGAAGCTGCAA < 41bp 0.548110660612542 0.819353179592026 NA NA prediction 0.542485037958969 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932953 chr13:41932952 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_17964 0 0 0 0 1 NAA16 chr13:41932946 3'AG 41932946 Downstream 7bp 16965 chr19 6850758 6850758 1 + G T LIHC 6850759 + 6850739 6850779 41 ACAGAGAAAAAGGCTTTCCGGGGGCTTACGGTAAGGGTCAA ACAGAGAAAAAGGCTTTCCTGGGGCTTACGGTAAGGGTCAA < 41bp 0.588652762403594 0.859874444901097 NA NA prediction 0.542443364995007 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6850759 chr19:6850758 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17965 0 0 0 0 2 VAV1 chr19:6850681 3'AG 6850681 Downstream 78bp 16966 chr19 6850758 6850758 1 + G T LIHC 6850759 + 6850739 6850779 41 ACAGAGAAAAAGGCTTTCCGGGGGCTTACGGTAAGGGTCAA ACAGAGAAAAAGGCTTTCCTGGGGCTTACGGTAAGGGTCAA < 41bp 0.588652762403594 0.859874444901097 NA NA prediction 0.542443364995007 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6850759 chr19:6850758 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_17965 0 0 0 0 2 VAV1 chr19:6850768 5'GT 6850768 Upstream 11bp 16967 chr1 32751131 32751131 1 + G T LUAD 32751132 + 32751112 32751152 41 TAGGGATGACCAACCCGGAGGTGATTCAGAACCTGGAGCGA TAGGGATGACCAACCCGGATGTGATTCAGAACCTGGAGCGA < 41bp 0.568584156694098 0.839802892476085 NA NA prediction 0.542437471563972 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32751132 chr1:32751131 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_17966 0 0 0 0 1 LCK chr1:32751115 3'AG 32751115 Downstream 17bp 16968 chr22 35783139 35783139 1 + G T KIRC 35783140 + 35783120 35783160 41 GGCAGAGGGTGATAGAAGAGGCCAAGACTGCGTTCCTGCTC GGCAGAGGGTGATAGAAGATGCCAAGACTGCGTTCCTGCTC < 41bp 0.587324184918457 0.858539667216778 NA NA prediction 0.542430964596641 Functional Gain - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35783140 chr22:35783139 nonsynonymous SNV 0.886 4 20 hm7G_associated_SNPs_17968 0 0 1 0 1 HMOX1 chr22:35783169 5'GT 35783169 Upstream 31bp 16969 chr19 13008220 13008220 1 + G T COAD 13008221 + 13008201 13008241 41 TCACGCCTGCCTGCAGCTCGGCCGCTTGAAGGACCAGGACA TCACGCCTGCCTGCAGCTCTGCCGCTTGAAGGACCAGGACA < 41bp 0.596232907785361 0.867445400194952 NA NA prediction 0.542424984819181 Functional Gain - GCDH ENSG00000105607 CDS Human protein_coding chr19:13008221 chr19:13008220 nonsynonymous SNV 0.902 5 20 hm7G_associated_SNPs_17969 0 0 1 0 1 GCDH chr19:13008242 5'GT 13008242 Upstream 23bp 16970 chr8 38095663 38095663 1 + G T OV 38095664 + 38095644 38095684 41 ATTGGGGTTCAACACCCACGGAGCAGGGTCGACCAAGAACT ATTGGGGTTCAACACCCACTGAGCAGGGTCGACCAAGAACT < 41bp 0.441920954947863 0.771180602802385 NA NA prediction 0.542361205604769 Functional Gain - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095664 chr8:38095663 synonymous SNV . 0 20 hm7G_associated_SNPs_17971 0 0 1 0 2 DDHD2 chr8:38095607 3'AG 38095607 Downstream 57bp 16971 chr8 38095663 38095663 1 + G T OV 38095664 + 38095644 38095684 41 ATTGGGGTTCAACACCCACGGAGCAGGGTCGACCAAGAACT ATTGGGGTTCAACACCCACTGAGCAGGGTCGACCAAGAACT < 41bp 0.441920954947863 0.771180602802385 NA NA prediction 0.542361205604769 Functional Gain - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095664 chr8:38095663 synonymous SNV . 0 20 hm7G_associated_SNPs_17971 0 0 1 0 2 DDHD2 chr8:38095727 5'GT 38095727 Upstream 65bp 16972 chr8 125072851 125072851 1 + G T UCEC 125072852 + 125072832 125072872 41 TCTCTGTGGATCGGCCTCAGGCTCTCATTGAGTGCGGAGGA TCTCTGTGGATCGGCCTCATGCTCTCATTGAGTGCGGAGGA < 41bp 0.587022263384563 0.858192893550664 NA NA prediction 0.542341260332203 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125072852 chr8:125072851 nonsynonymous SNV 0.022 4 20 hm7G_associated_SNPs_17972 0 0 0 0 2 FER1L6 chr8:125072789 3'AG 125072789 Downstream 63bp 16973 chr8 125072851 125072851 1 + G T UCEC 125072852 + 125072832 125072872 41 TCTCTGTGGATCGGCCTCAGGCTCTCATTGAGTGCGGAGGA TCTCTGTGGATCGGCCTCATGCTCTCATTGAGTGCGGAGGA < 41bp 0.587022263384563 0.858192893550664 NA NA prediction 0.542341260332203 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125072852 chr8:125072851 nonsynonymous SNV 0.022 4 20 hm7G_associated_SNPs_17972 0 0 0 0 2 FER1L6 chr8:125072950 5'GT 125072950 Upstream 100bp 16974 chr19 49703938 49703938 1 + G T LIHC 49703939 + 49703919 49703959 41 TATGGCGTGGCCACGGAGGGGCTCCTGAGGCCACGGGACAG TATGGCGTGGCCACGGAGGTGCTCCTGAGGCCACGGGACAG < 41bp 0.599909913188617 0.871062978105723 NA NA prediction 0.542306129834212 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49703939 chr19:49703938 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_17973 0 0 0 0 1 TRPM4 chr19:49703868 3'AG 49703868 Downstream 71bp 16975 chr1 9613740 9613740 1 + G T COAD 9613741 + 9613721 9613761 41 CTAGAAGTCATTAAGACACGGTTGCAGTCTTCAAGATTAGC CTAGAAGTCATTAAGACACTGTTGCAGTCTTCAAGATTAGC < 41bp 0.572074952382514 0.843219806096294 NA NA prediction 0.542289707427561 Functional Gain - SLC25A33 ENSG00000171612 CDS Human protein_coding chr1:9613741 chr1:9613740 nonsynonymous SNV 0.753 5 20 hm7G_associated_SNPs_17974 0 0 1 0 1 SLC25A33 chr1:9613684 3'AG 9613684 Downstream 57bp 16976 chr9 133945109 133945109 1 + G T LUAD 133945110 + 133945090 133945130 41 GGCCCAGTGCCACGAGAACGGCACATGCGTGTGCAGGCCTG GGCCCAGTGCCACGAGAACTGCACATGCGTGTGCAGGCCTG < 41bp 0.600003820722826 0.871124307877007 NA NA prediction 0.542240974308361 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133945110 chr9:133945109 nonsynonymous SNV 0.873 4 20 hm7G_associated_SNPs_17979 0 0 0 0 1 LAMC3 chr9:133945059 3'AG 133945059 Downstream 51bp 16977 chr12 56112932 56112932 1 + G T STAD 56112933 + 56112913 56112953 41 ATGAGGTGAAGACCCTACAGGTCCAGGCTGCCCAATTTGCC ATGAGGTGAAGACCCTACATGTCCAGGCTGCCCAATTTGCC < 41bp 0.574848413749414 0.845962673603952 NA NA prediction 0.542228519709076 Functional Gain - BLOC1S1 ENSG00000135441;ENSG00000258311 CDS Human other chr12:56112933 chr12:56112932 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_17980 0 0 1 0 1 BLOC1S1 chr12:56113007 5'GT 56113007 Upstream 76bp 16978 chr19 15164634 15164634 1 + G T THCA 15164635 + 15164615 15164655 41 CGTGGTACTCATGGCTCACGGGAGGGAAGGCTTCCTCAAGG CGTGGTACTCATGGCTCACTGGAGGGAAGGCTTCCTCAAGG < 41bp 0.587332465060987 0.85842618691716 NA NA prediction 0.542187443712346 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164635 chr19:15164634 nonsynonymous SNV 0.532 4 20 hm7G_associated_SNPs_17981 0 0 0 0 1 CASP14 chr19:15164544 3'AG 15164544 Downstream 91bp 16979 chrX 49834645 49834645 1 + G T UCEC 49834646 + 49834626 49834666 41 GATTTCAATACAATTGATTGGGTGAGAGAGAAGTCTCGAGA GATTTCAATACAATTGATTTGGTGAGAGAGAAGTCTCGAGA < 41bp 0.583702065863994 0.854786757615407 NA NA prediction 0.542169383502826 Functional Gain - CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49834646 chrX:49834645 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_17982 0 0 1 0 1 CLCN5 chrX:49834685 5'GT 49834685 Upstream 41bp 16980 chr1 35847281 35847281 1 + G T LUAD 35847282 + 35847262 35847302 41 GTTACTGTTACAGTGGGTCGGGACAATGCCACATGCTTCAG GTTACTGTTACAGTGGGTCTGGACAATGCCACATGCTTCAG < 41bp 0.453807543454479 0.771079691873184 NA NA prediction 0.542159383746367 Functional Gain - ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35847282 chr1:35847281 synonymous SNV . 0 20 hm7G_associated_SNPs_17984 0 0 1 0 1 ZMYM4 chr1:35847359 5'GT 35847359 Upstream 79bp 16981 chr17 17897710 17897710 1 + G T TGCT 17897711 + 17897691 17897731 41 GAGGACGAGCAGGCGCAGCGGGAGGAGCTAGAGAAGCACAA GAGGACGAGCAGGCGCAGCTGGAGGAGCTAGAGAAGCACAA < 41bp 0.591048626329405 0.862123975457836 NA NA prediction 0.542150698256862 Functional Gain - DRC3 ENSG00000171962 CDS Human protein_coding chr17:17897711 chr17:17897710 nonsynonymous SNV 0.088 0 20 hm7G_associated_SNPs_17986 0 0 0 0 2 DRC3 chr17:17897613 3'AG 17897613 Downstream 98bp 16982 chr17 17897710 17897710 1 + G T TGCT 17897711 + 17897691 17897731 41 GAGGACGAGCAGGCGCAGCGGGAGGAGCTAGAGAAGCACAA GAGGACGAGCAGGCGCAGCTGGAGGAGCTAGAGAAGCACAA < 41bp 0.591048626329405 0.862123975457836 NA NA prediction 0.542150698256862 Functional Gain - DRC3 ENSG00000171962 CDS Human protein_coding chr17:17897711 chr17:17897710 nonsynonymous SNV 0.088 0 20 hm7G_associated_SNPs_17986 0 0 0 0 2 DRC3 chr17:17897732 5'GT 17897732 Upstream 23bp 16983 chr11 19186684 19186684 1 + G T LIHC 19186685 + 19186665 19186705 41 CACTGCCTGTGGACTGGACGGTGCATAGGTGAGAGATTTAA CACTGCCTGTGGACTGGACTGTGCATAGGTGAGAGATTTAA < 41bp 0.562110590254667 0.833184915560968 NA NA prediction 0.542148650612603 Functional Gain - ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19186685 chr11:19186684 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_17987 0 0 0 0 2 ZDHHC13 chr11:19186599 3'AG 19186599 Downstream 86bp 16984 chr11 19186684 19186684 1 + G T LIHC 19186685 + 19186665 19186705 41 CACTGCCTGTGGACTGGACGGTGCATAGGTGAGAGATTTAA CACTGCCTGTGGACTGGACTGTGCATAGGTGAGAGATTTAA < 41bp 0.562110590254667 0.833184915560968 NA NA prediction 0.542148650612603 Functional Gain - ZDHHC13 ENSG00000177054 CDS Human protein_coding chr11:19186685 chr11:19186684 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_17987 0 0 0 0 2 ZDHHC13 chr11:19186692 5'GT 19186692 Upstream 9bp 16985 chr19 6820817 6820817 1 + G T UCEC 6820818 + 6820798 6820838 41 TTGACCTCTTCGATGTGCAGGATTTTGGCAAGGTGAGCTGC TTGACCTCTTCGATGTGCATGATTTTGGCAAGGTGAGCTGC < 41bp 0.59123682449777 0.862309361337787 NA NA prediction 0.542145073680034 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6820818 chr19:6820817 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_17988 0 0 0 0 1 VAV1 chr19:6820829 5'GT 6820829 Upstream 13bp 16986 chr19 56113526 56113526 1 + G T UCEC 56113527 + 56113507 56113547 41 CTTCGCCTTTGCCCGGGGAGGAAGAGAAACCTCTGGCCTTA CTTCGCCTTTGCCCGGGGATGAAGAGAAACCTCTGGCCTTA < 41bp 0.563886015203882 0.834946920884025 NA NA prediction 0.542121811360285 Functional Gain - ZNF524 ENSG00000171443 CDS Human protein_coding chr19:56113527 chr19:56113526 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_17989 0 0 0 0 1 ZNF524 chr19:56113441 3'AG 56113441 Downstream 86bp 16987 chr12 54960806 54960806 1 + G T UCEC 54960807 + 54960787 54960827 41 ATGGGGAGATAAACATTGAGGAGCTGAAGAAAAATCTGGAG ATGGGGAGATAAACATTGATGAGCTGAAGAAAAATCTGGAG < 41bp 0.493531785888831 0.771042980499569 NA NA prediction 0.542085960999139 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54960807 chr12:54960806 nonsynonymous SNV 0.792 1 20 hm7G_associated_SNPs_17990 0 0 0 0 2 PDE1B chr12:54960758 3'AG 54960758 Downstream 49bp 16988 chr12 54960806 54960806 1 + G T UCEC 54960807 + 54960787 54960827 41 ATGGGGAGATAAACATTGAGGAGCTGAAGAAAAATCTGGAG ATGGGGAGATAAACATTGATGAGCTGAAGAAAAATCTGGAG < 41bp 0.493531785888831 0.771042980499569 NA NA prediction 0.542085960999139 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54960807 chr12:54960806 nonsynonymous SNV 0.792 1 20 hm7G_associated_SNPs_17990 0 0 0 0 2 PDE1B chr12:54960871 5'GT 54960871 Upstream 66bp 16989 chr2 210896182 210896182 1 - C A PRAD 210896181 - 210896161 210896201 41 CTTCTGCACAACTGTTACAGGGAAGAAAGAAAAGACATTTG CTTCTGCACAACTGTTACATGGAAGAAAGAAAAGACATTTG < 41bp 0.472727481276122 0.77103958508636 NA NA prediction 0.54207917017272 Functional Gain - KANSL1L ENSG00000144445 CDS Human protein_coding chr2:210896181 chr2:210896182 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_17991 0 0 0 0 2 KANSL1L chr2:210896145 5'GT 210896145 Upstream 38bp 16990 chr2 210896182 210896182 1 - C A PRAD 210896181 - 210896161 210896201 41 CTTCTGCACAACTGTTACAGGGAAGAAAGAAAAGACATTTG CTTCTGCACAACTGTTACATGGAAGAAAGAAAAGACATTTG < 41bp 0.472727481276122 0.77103958508636 NA NA prediction 0.54207917017272 Functional Gain - KANSL1L ENSG00000144445 CDS Human protein_coding chr2:210896181 chr2:210896182 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_17991 0 0 0 0 2 KANSL1L chr2:210896270 3'AG 210896270 Downstream 89bp 16991 chr9 91083363 91083363 1 + G T COAD 91083364 + 91083344 91083384 41 AACATATGTTTGAGACAGAGGATGGTTCTAAAGATGAGTGG AACATATGTTTGAGACAGATGATGGTTCTAAAGATGAGTGG < 41bp 0.577789438149731 0.848823986416463 NA NA prediction 0.542069096533466 Functional Gain - SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91083364 chr9:91083363 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_17993 0 0 1 0 1 SPIN1 chr9:91083287 3'AG 91083287 Downstream 77bp 16992 chr12 7310201 7310201 1 + G T ESCA 7310202 + 7310182 7310222 41 CCGCGTCTCAGGGGCCGGCGGGCCTCCAGGGGCCTCCAGTG CCGCGTCTCAGGGGCCGGCTGGCCTCCAGGGGCCTCCAGTG < 41bp 0.602249138922399 0.873266723663759 NA NA prediction 0.54203516948272 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7310202 chr12:7310201 nonsynonymous SNV 0.049 2 20 hm7G_associated_SNPs_17995 0 0 1 0 1 CLSTN3 chr12:7310287 5'GT 7310287 Upstream 87bp 16993 chr3 113517288 113517288 1 + G T LUAD 113517289 + 113517269 113517309 41 AGAAATTGTACAGCTTGTGGGAAAGGTGAGTTGTTAAATTC AGAAATTGTACAGCTTGTGTGAAAGGTGAGTTGTTAAATTC < 41bp 0.458781278252994 0.771015652215602 NA NA prediction 0.542031304431203 Functional Gain - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113517289 chr3:113517288 stopgain 0.988 1 20 hm7G_associated_SNPs_17997 0 0 1 0 1 ATP6V1A chr3:113517293 5'GT 113517293 Upstream 6bp 16994 chr11 130343026 130343026 1 + G T LUAD 130343027 + 130343007 130343047 41 GTTACAAAGGGCTGATCGGGGATGACAACTACCTGGCTCTG GTTACAAAGGGCTGATCGGTGATGACAACTACCTGGCTCTG < 41bp 0.573585951223135 0.84459497998696 NA NA prediction 0.542018057527648 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130343027 chr11:130343026 synonymous SNV . 0 20 hm7G_associated_SNPs_17998 0 0 0 0 1 ADAMTS15 chr11:130342942 3'AG 130342942 Downstream 85bp 16995 chr7 72409917 72409917 1 + G T UCEC 72409918 + 72409898 72409938 41 CCAGTTCTTCAACTCCATTGGCAGCAGACAGGGAGTCCCAG CCAGTTCTTCAACTCCATTTGCAGCAGACAGGGAGTCCCAG < 41bp 0.599866691983664 0.870835132838793 NA NA prediction 0.541936881710258 Functional Gain - POM121 ENSG00000196313 CDS Human protein_coding chr7:72409918 chr7:72409917 nonsynonymous SNV 0.008 1 20 hm7G_associated_SNPs_18000 0 0 1 0 1 POM121 chr7:72409875 3'AG 72409875 Downstream 43bp 16996 chr16 27231720 27231720 1 + G T THCA 27231721 + 27231701 27231741 41 TCTCTCTCCCCAGGTGATGGGGAGGAAGTACATCCGGCTGT TCTCTCTCCCCAGGTGATGTGGAGGAAGTACATCCGGCTGT < 41bp 0.582989806842462 0.853951708007495 NA NA prediction 0.541923802330066 Functional Gain - KDM8 ENSG00000155666 CDS Human protein_coding chr16:27231721 chr16:27231720 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_18001 0 0 0 0 2 KDM8 chr16:27231714 3'AG 27231714 Downstream 7bp 16997 chr16 27231720 27231720 1 + G T THCA 27231721 + 27231701 27231741 41 TCTCTCTCCCCAGGTGATGGGGAGGAAGTACATCCGGCTGT TCTCTCTCCCCAGGTGATGTGGAGGAAGTACATCCGGCTGT < 41bp 0.582989806842462 0.853951708007495 NA NA prediction 0.541923802330066 Functional Gain - KDM8 ENSG00000155666 CDS Human protein_coding chr16:27231721 chr16:27231720 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_18001 0 0 0 0 2 KDM8 chr16:27231806 5'GT 27231806 Upstream 87bp 16998 chr5 43700243 43700243 1 + G T LUAD 43700244 + 43700224 43700264 41 TGGAATTCACCCAGTTGCAGGCCGAATGCCTGGTCAGCTTA TGGAATTCACCCAGTTGCATGCCGAATGCCTGGTCAGCTTA < 41bp 0.587039049732908 0.857978771265701 NA NA prediction 0.541879443065586 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43700244 chr5:43700243 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18003 0 0 1 0 2 NNT chr5:43700221 3'AG 43700221 Downstream 23bp 16999 chr5 43700243 43700243 1 + G T LUAD 43700244 + 43700224 43700264 41 TGGAATTCACCCAGTTGCAGGCCGAATGCCTGGTCAGCTTA TGGAATTCACCCAGTTGCATGCCGAATGCCTGGTCAGCTTA < 41bp 0.587039049732908 0.857978771265701 NA NA prediction 0.541879443065586 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43700244 chr5:43700243 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18003 0 0 1 0 2 NNT chr5:43700339 5'GT 43700339 Upstream 97bp 17000 chr2 27721155 27721155 1 + G T UCEC 27721156 + 27721136 27721176 41 GCTGGTTGTGCTGAGTGGAGGGGGCACCTCTGGCCGGATGG GCTGGTTGTGCTGAGTGGATGGGGCACCTCTGGCCGGATGG < 41bp 0.590524981693371 0.861461238902801 NA NA prediction 0.541872514418859 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27721156 chr2:27721155 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18004 0 0 1 0 2 GCKR chr2:27721122 3'AG 27721122 Downstream 34bp 17001 chr2 27721155 27721155 1 + G T UCEC 27721156 + 27721136 27721176 41 GCTGGTTGTGCTGAGTGGAGGGGGCACCTCTGGCCGGATGG GCTGGTTGTGCTGAGTGGATGGGGCACCTCTGGCCGGATGG < 41bp 0.590524981693371 0.861461238902801 NA NA prediction 0.541872514418859 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27721156 chr2:27721155 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18004 0 0 1 0 2 GCKR chr2:27721190 5'GT 27721190 Upstream 36bp 17002 chr5 137522065 137522065 1 + G T ESCA 137522066 + 137522046 137522086 41 GCTTGTTGCCACAGCACTGGGGCAGGAAAACTTCGTCAAGC GCTTGTTGCCACAGCACTGTGGCAGGAAAACTTCGTCAAGC < 41bp 0.449083000917468 0.770929230724396 NA NA prediction 0.541858461448792 Functional Gain - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137522066 chr5:137522065 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18005 0 0 1 0 2 KIF20A chr5:137521983 3'AG 137521983 Downstream 83bp 17003 chr5 137522065 137522065 1 + G T ESCA 137522066 + 137522046 137522086 41 GCTTGTTGCCACAGCACTGGGGCAGGAAAACTTCGTCAAGC GCTTGTTGCCACAGCACTGTGGCAGGAAAACTTCGTCAAGC < 41bp 0.449083000917468 0.770929230724396 NA NA prediction 0.541858461448792 Functional Gain - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137522066 chr5:137522065 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18005 0 0 1 0 2 KIF20A chr5:137522120 5'GT 137522120 Upstream 56bp 17004 chr14 77323781 77323781 1 + G T UCEC 77323782 + 77323762 77323802 41 CTTATCCTGGCTATCAAGAGGAACCCCAAATCCAGGATGGA CTTATCCTGGCTATCAAGATGAACCCCAAATCCAGGATGGA < 41bp 0.575000731695559 0.845917549121875 NA NA prediction 0.541833634852631 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77323782 chr14:77323781 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_18006 0 0 0 0 1 LRRC74A chr14:77323723 3'AG 77323723 Downstream 59bp 17005 chr7 107215657 107215657 1 + G T BRCA 107215658 + 107215638 107215678 41 CAATGGCAGAAGGTTATGGGGCTTGCTTAATAAACAAGCCA CAATGGCAGAAGGTTATGGTGCTTGCTTAATAAACAAGCCA < 41bp 0.584281537277819 0.855192400193345 NA NA prediction 0.541821725831053 Functional Gain - DUS4L ENSG00000105865 CDS Human protein_coding chr7:107215658 chr7:107215657 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_18008 0 0 0 0 2 DUS4L chr7:107215633 3'AG 107215633 Downstream 25bp 17006 chr7 107215657 107215657 1 + G T BRCA 107215658 + 107215638 107215678 41 CAATGGCAGAAGGTTATGGGGCTTGCTTAATAAACAAGCCA CAATGGCAGAAGGTTATGGTGCTTGCTTAATAAACAAGCCA < 41bp 0.584281537277819 0.855192400193345 NA NA prediction 0.541821725831053 Functional Gain - DUS4L ENSG00000105865 CDS Human protein_coding chr7:107215658 chr7:107215657 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_18008 0 0 0 0 2 DUS4L chr7:107215755 5'GT 107215755 Upstream 99bp 17007 chr3 52246386 52246386 1 + G T UCEC 52246387 + 52246367 52246407 41 CGGGGAGAAGAGCTCCTACGGATTGCCCCCACCCCTCACCA CGGGGAGAAGAGCTCCTACTGATTGCCCCCACCCCTCACCA < 41bp 0.429925599235469 0.770906176156258 NA NA prediction 0.541812352312516 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52246387 chr3:52246386 nonsynonymous SNV 0.811 5 20 hm7G_associated_SNPs_18009 0 0 1 0 1 ALAS1 chr3:52246436 5'GT 52246436 Upstream 51bp 17008 chr15 44092137 44092137 1 - C A COAD 44092136 - 44092116 44092156 41 CCGGCACCTCCCTGGGCCTGGCACAGCAGCACAGCGGAGGC CCGGCACCTCCCTGGGCCTTGCACAGCAGCACAGCGGAGGC < 41bp 0.584730283322787 0.855633513027868 NA NA prediction 0.541806459410161 Functional Gain - SERINC4 ENSG00000184716 CDS Human protein_coding chr15:44092136 chr15:44092137 synonymous SNV . 0 20 hm7G_associated_SNPs_18010 0 0 0 0 1 SERINC4 chr15:44092083 5'GT 44092083 Upstream 55bp 17009 chr1 230914830 230914830 1 + G T LUSC 230914831 + 230914811 230914851 41 GGGAGGTGACGGTCCATCAGGGAAGCTGGGTTCGCGGCTCC GGGAGGTGACGGTCCATCATGGAAGCTGGGTTCGCGGCTCC < 41bp 0.60183530819622 0.872736708757344 NA NA prediction 0.541802801122248 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230914831 chr1:230914830 nonsynonymous SNV 0.713 1 20 hm7G_associated_SNPs_18011 0 0 0 0 1 CAPN9 chr1:230914879 5'GT 230914879 Upstream 50bp 17010 chr11 73106527 73106527 1 + G T LIHC 73106528 + 73106508 73106548 41 GGCTAAGTGAGAGCAACCTGGTCATCTGAGGGGCGGTCTAG GGCTAAGTGAGAGCAACCTTGTCATCTGAGGGGCGGTCTAG < 41bp 0.456260153548641 0.770873366739327 NA NA prediction 0.541746733478655 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73106528 chr11:73106527 synonymous SNV . 0 20 hm7G_associated_SNPs_18012 0 0 1 0 1 RELT chr11:73106489 3'AG 73106489 Downstream 39bp 17011 chr1 53343512 53343512 1 + G T COAD 53343513 + 53343493 53343533 41 AAATCTTCATCCAAGTCTTGGAGGTGGGAAGACAGGATTGA AAATCTTCATCCAAGTCTTTGAGGTGGGAAGACAGGATTGA < 41bp 0.566418573818932 0.83727985080567 NA NA prediction 0.541722553973476 Functional Gain - ZYG11A ENSG00000203995 CDS Human protein_coding chr1:53343513 chr1:53343512 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_18013 0 0 1 0 1 ZYG11A chr1:53343515 5'GT 53343515 Upstream 4bp 17012 chr17 29258916 29258916 1 + G T COAD 29258917 + 29258897 29258937 41 CTCTTTTTAGGGTCTTAAAGGAACAATGGATTCGAGCTAAG CTCTTTTTAGGGTCTTAAATGAACAATGGATTCGAGCTAAG < 41bp 0.581113720734491 0.851974578488421 NA NA prediction 0.541721715507859 Functional Gain - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29258917 chr17:29258916 stopgain 0.998 2 20 hm7G_associated_SNPs_18014 0 0 0 0 1 ADAP2 chr17:29258986 5'GT 29258986 Upstream 71bp 17013 chr11 128638059 128638059 1 + G T LUAD 128638060 + 128638040 128638080 41 CAAATGCAGCAAGCTGGTGGGCGGAGGCGAGTCCAACCCCA CAAATGCAGCAAGCTGGTGTGCGGAGGCGAGTCCAACCCCA < 41bp 0.592458335851724 0.863305881314763 NA NA prediction 0.541695090926078 Functional Gain - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128638060 chr11:128638059 nonsynonymous SNV 0.805 3 20 hm7G_associated_SNPs_18017 0 0 0 0 1 FLI1 chr11:128638013 3'AG 128638013 Downstream 47bp 17014 chr17 48562113 48562113 1 + G T LIHC 48562114 + 48562094 48562134 41 TGGTTTTCCAGGGGTCTTCGGTGTTCCTGGGAGGGTCTGGC TGGTTTTCCAGGGGTCTTCTGTGTTCCTGGGAGGGTCTGGC < 41bp 0.56517754730822 0.836008249583622 NA NA prediction 0.541661404550804 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562114 chr17:48562113 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18018 0 0 1 0 1 RSAD1 chr17:48562105 3'AG 48562105 Downstream 9bp 17015 chr10 22678113 22678113 1 + G T UCEC 22678114 + 22678094 22678134 41 ACAGCTGGTAGTTAACGCAGGAGGGGTTGCTGCCGTGATTG ACAGCTGGTAGTTAACGCATGAGGGGTTGCTGCCGTGATTG < 41bp 0.583291024811422 0.854113544847423 NA NA prediction 0.541645040072002 Functional Gain - SPAG6 ENSG00000077327 CDS Human protein_coding chr10:22678114 chr10:22678113 stopgain 0.971 1 20 hm7G_associated_SNPs_18019 0 0 0 0 1 SPAG6 chr10:22678089 3'AG 22678089 Downstream 25bp 17016 chr15 41865900 41865900 1 + G T LUSC 41865901 + 41865881 41865921 41 CGTTCGGGGTGACCATGTGGGAGATCATGACACGTGGGCAG CGTTCGGGGTGACCATGTGTGAGATCATGACACGTGGGCAG < 41bp 0.441084728310141 0.770809086774367 NA NA prediction 0.541618173548734 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865901 chr15:41865900 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18021 0 0 0 0 1 TYRO3 chr15:41865877 3'AG 41865877 Downstream 24bp 17017 chr20 2291762 2291762 1 + G T GBM 2291763 + 2291743 2291783 41 CGAATTGGCATGATTGGCTGGAACTTTGGACAGGTAAAAGG CGAATTGGCATGATTGGCTTGAACTTTGGACAGGTAAAAGG < 41bp 0.440769970370997 0.770805676028503 NA NA prediction 0.541611352057007 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2291763 chr20:2291762 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18022 0 0 0 0 1 TGM3 chr20:2291775 5'GT 2291775 Upstream 14bp 17018 chr12 13065398 13065398 1 + G T UCEC 13065399 + 13065379 13065419 41 AGAACCAGCCTCCCCAAAAGGAATTCTCCATCCCACGGGCC AGAACCAGCCTCCCCAAAATGAATTCTCCATCCCACGGGCC < 41bp 0.469098399553248 0.770781783352997 NA NA prediction 0.541563566705995 Functional Gain - GPRC5A ENSG00000013588 CDS Human protein_coding chr12:13065399 chr12:13065398 nonsynonymous SNV 0.886 0 20 hm7G_associated_SNPs_18023 0 0 0 0 1 GPRC5A chr12:13065381 3'AG 13065381 Downstream 18bp 17019 chr12 102796285 102796285 1 - C A LUAD 102796284 - 102796264 102796304 41 ACAAGAACTACAGGATGTAGGAAGACCCTCCTGAGGAGTGA ACAAGAACTACAGGATGTATGAAGACCCTCCTGAGGAGTGA < 41bp 0.522586605054746 0.793339044740054 NA NA prediction 0.541504879370617 Functional Gain - IGF1 ENSG00000017427 CDS Human protein_coding chr12:102796284 chr12:102796285 stoploss 0.945 0 20 hm7G_associated_SNPs_18026 0 0 0 0 1 IGF1 chr12:102796344 3'AG 102796344 Downstream 60bp 17020 chr1 117504234 117504234 1 + G T HNSC 117504235 + 117504215 117504255 41 AAACAGCGGAACAACAGCTGGGTGAAAAGCAAGGATGTCTT AAACAGCGGAACAACAGCTTGGTGAAAAGCAAGGATGTCTT < 41bp 0.567312096149538 0.838057636932837 NA NA prediction 0.541491081566598 Functional Gain - PTGFRN ENSG00000134247 CDS Human protein_coding chr1:117504235 chr1:117504234 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_18027 0 0 1 0 1 PTGFRN chr1:117504290 5'GT 117504290 Upstream 57bp 17021 chr8 144644247 144644247 1 + G T UCEC 144644248 + 144644228 144644268 41 TGTGCCAGCTGCTGCTGGAGGGCCTGGAGGGGGTGCTGCGG TGTGCCAGCTGCTGCTGGATGGCCTGGAGGGGGTGCTGCGG < 41bp 0.592184366415042 0.862910872468195 NA NA prediction 0.541453012106307 Functional Gain - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144644248 chr8:144644247 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_18029 0 0 1 0 1 GSDMD chr8:144644301 5'GT 144644301 Upstream 55bp 17022 chr1 93599699 93599699 1 + G T THCA 93599700 + 93599680 93599720 41 CCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAAAGAA CCTCAGATGTGGATTTCACTGGTGCTTCCAGTGCAAAAGAA < 41bp 0.579532913176556 0.850257034634001 NA NA prediction 0.541448242914892 Functional Gain - MTF2 ENSG00000143033 CDS Human protein_coding chr1:93599700 chr1:93599699 synonymous SNV . 0 20 hm7G_associated_SNPs_18030 0 0 1 0 2 MTF2 chr1:93599648 3'AG 93599648 Downstream 52bp 17023 chr1 93599699 93599699 1 + G T THCA 93599700 + 93599680 93599720 41 CCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAAAGAA CCTCAGATGTGGATTTCACTGGTGCTTCCAGTGCAAAAGAA < 41bp 0.579532913176556 0.850257034634001 NA NA prediction 0.541448242914892 Functional Gain - MTF2 ENSG00000143033 CDS Human protein_coding chr1:93599700 chr1:93599699 synonymous SNV . 0 20 hm7G_associated_SNPs_18030 0 0 1 0 2 MTF2 chr1:93599752 5'GT 93599752 Upstream 54bp 17024 chrX 149867675 149867675 1 + G T UCEC 149867676 + 149867656 149867696 41 TATTTTTTTTAGTCCCACAGGATCACATGTTGAATGGTGTA TATTTTTTTTAGTCCCACATGATCACATGTTGAATGGTGTA < 41bp 0.569630088383997 0.840348802680466 NA NA prediction 0.541437428592938 Functional Gain - MTMR1 ENSG00000063601;ENSG00000063601 exonic;splicing Human protein_coding chrX:149867676 chrX:149867675 stopgain 1.000 1 20 hm7G_associated_SNPs_18031 0 0 1 0 2 MTMR1 chrX:149867668 3'AG 149867668 Downstream 8bp 17025 chrX 149867675 149867675 1 + G T UCEC 149867676 + 149867656 149867696 41 TATTTTTTTTAGTCCCACAGGATCACATGTTGAATGGTGTA TATTTTTTTTAGTCCCACATGATCACATGTTGAATGGTGTA < 41bp 0.569630088383997 0.840348802680466 NA NA prediction 0.541437428592938 Functional Gain - MTMR1 ENSG00000063601;ENSG00000063601 exonic;splicing Human protein_coding chrX:149867676 chrX:149867675 stopgain 1.000 1 20 hm7G_associated_SNPs_18031 0 0 1 0 2 MTMR1 chrX:149867773 5'GT 149867773 Upstream 99bp 17026 chr16 31339510 31339510 1 + G T LUAD 31339511 + 31339491 31339531 41 ACAAAACCGAATTCCAACTGGAGCTGCCGGTGAAATATGCT ACAAAACCGAATTCCAACTTGAGCTGCCGGTGAAATATGCT < 41bp 0.434742099629559 0.770717552323914 NA NA prediction 0.541435104647828 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31339511 chr16:31339510 synonymous SNV . 0 20 hm7G_associated_SNPs_18032 0 0 0 0 2 ITGAM chr16:31339468 3'AG 31339468 Downstream 43bp 17027 chr16 31339510 31339510 1 + G T LUAD 31339511 + 31339491 31339531 41 ACAAAACCGAATTCCAACTGGAGCTGCCGGTGAAATATGCT ACAAAACCGAATTCCAACTTGAGCTGCCGGTGAAATATGCT < 41bp 0.434742099629559 0.770717552323914 NA NA prediction 0.541435104647828 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31339511 chr16:31339510 synonymous SNV . 0 20 hm7G_associated_SNPs_18032 0 0 0 0 2 ITGAM chr16:31339551 5'GT 31339551 Upstream 42bp 17028 chr17 4726030 4726030 1 + G T LUAD 4726031 + 4726011 4726051 41 CCACGGTCAGTCCCCCCTTGGCTCGGTCTGAGCTCACCCAG CCACGGTCAGTCCCCCCTTTGCTCGGTCTGAGCTCACCCAG < 41bp 0.441165436780303 0.770709792056461 NA NA prediction 0.541419584112922 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4726031 chr17:4726030 nonsynonymous SNV 0.117 0 20 hm7G_associated_SNPs_18035 0 0 0 0 1 PLD2 chr17:4725935 3'AG 4725935 Downstream 96bp 17029 chr6 54185408 54185408 1 + G T LIHC 54185409 + 54185389 54185429 41 ATGGTCAACATTATGAAGAGGGATCAGTAATTAAAGAAAAC ATGGTCAACATTATGAAGATGGATCAGTAATTAAAGAAAAC < 41bp 0.518853789726284 0.789554766097951 NA NA prediction 0.541401952743333 Functional Gain - TINAG ENSG00000137251 CDS Human protein_coding chr6:54185409 chr6:54185408 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_18036 0 0 0 0 2 TINAG chr6:54185377 3'AG 54185377 Downstream 32bp 17030 chr6 54185408 54185408 1 + G T LIHC 54185409 + 54185389 54185429 41 ATGGTCAACATTATGAAGAGGGATCAGTAATTAAAGAAAAC ATGGTCAACATTATGAAGATGGATCAGTAATTAAAGAAAAC < 41bp 0.518853789726284 0.789554766097951 NA NA prediction 0.541401952743333 Functional Gain - TINAG ENSG00000137251 CDS Human protein_coding chr6:54185409 chr6:54185408 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_18036 0 0 0 0 2 TINAG chr6:54185440 5'GT 54185440 Upstream 33bp 17031 chr12 109494509 109494509 1 + G T UCEC 109494510 + 109494490 109494530 41 TAAAGTCATGAAGAACTGGGGAGTTATAGGTGGAATTGCTG TAAAGTCATGAAGAACTGGTGAGTTATAGGTGGAATTGCTG < 41bp 0.455116763000015 0.770693430079014 NA NA prediction 0.541386860158028 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109494510 chr12:109494509 stopgain 1.000 1 20 hm7G_associated_SNPs_18038 0 0 1 0 2 USP30 chr12:109494487 3'AG 109494487 Downstream 23bp 17032 chr12 109494509 109494509 1 + G T UCEC 109494510 + 109494490 109494530 41 TAAAGTCATGAAGAACTGGGGAGTTATAGGTGGAATTGCTG TAAAGTCATGAAGAACTGGTGAGTTATAGGTGGAATTGCTG < 41bp 0.455116763000015 0.770693430079014 NA NA prediction 0.541386860158028 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109494510 chr12:109494509 stopgain 1.000 1 20 hm7G_associated_SNPs_18038 0 0 1 0 2 USP30 chr12:109494596 5'GT 109494596 Upstream 88bp 17033 chr10 72289727 72289727 1 + G T LUSC 72289728 + 72289708 72289748 41 TGTGGGGCCCCCAACTTCCGGCAGGTGCAGGGTGGGCTCAC TGTGGGGCCCCCAACTTCCTGCAGGTGCAGGGTGGGCTCAC < 41bp 0.602834522839546 0.873499628385141 NA NA prediction 0.541330211091189 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72289728 chr10:72289727 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_18040 0 0 1 0 1 PALD1 chr10:72289645 3'AG 72289645 Downstream 83bp 17034 chr14 23240556 23240556 1 + G T UCEC 23240557 + 23240537 23240577 41 AGTTGGAGCTAGCAGCCAGGGGTAAATAGTCCTTTCAGGCC AGTTGGAGCTAGCAGCCAGTGGTAAATAGTCCTTTCAGGCC < 41bp 0.585665380342407 0.856309026536464 NA NA prediction 0.541287292388114 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240557 chr14:23240556 nonsynonymous SNV 0.690 2 20 hm7G_associated_SNPs_18043 0 0 0 1 2 OXA1L chr14:23240477 3'AG 23240477 Downstream 80bp 17035 chr14 23240556 23240556 1 + G T UCEC 23240557 + 23240537 23240577 41 AGTTGGAGCTAGCAGCCAGGGGTAAATAGTCCTTTCAGGCC AGTTGGAGCTAGCAGCCAGTGGTAAATAGTCCTTTCAGGCC < 41bp 0.585665380342407 0.856309026536464 NA NA prediction 0.541287292388114 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240557 chr14:23240556 nonsynonymous SNV 0.690 2 20 hm7G_associated_SNPs_18043 0 0 0 1 2 OXA1L chr14:23240557 5'GT 23240557 Upstream 2bp 17036 chr12 82796860 82796860 1 + G T COAD 82796861 + 82796841 82796881 41 TCAAGGGAGTTTGCAGTGTGGGTTGTTGCTACCACCTCTTA TCAAGGGAGTTTGCAGTGTTGGTTGTTGCTACCACCTCTTA < 41bp 0.57483863927699 0.845469636208776 NA NA prediction 0.541261993863571 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796861 chr12:82796860 synonymous SNV . 0 20 hm7G_associated_SNPs_18045 0 0 1 0 2 METTL25 chr12:82796762 3'AG 82796762 Downstream 99bp 17037 chr12 82796860 82796860 1 + G T COAD 82796861 + 82796841 82796881 41 TCAAGGGAGTTTGCAGTGTGGGTTGTTGCTACCACCTCTTA TCAAGGGAGTTTGCAGTGTTGGTTGTTGCTACCACCTCTTA < 41bp 0.57483863927699 0.845469636208776 NA NA prediction 0.541261993863571 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796861 chr12:82796860 synonymous SNV . 0 20 hm7G_associated_SNPs_18045 0 0 1 0 2 METTL25 chr12:82796909 5'GT 82796909 Upstream 50bp 17038 chr6 18161622 18161622 1 + G T UCEC 18161623 + 18161603 18161643 41 GGCTCAGAGAAGAAGTACAGGAAATGTGAAAAGGCAGGCTG GGCTCAGAGAAGAAGTACATGAAATGTGAAAAGGCAGGCTG < 41bp 0.590791043573496 0.861396715284323 NA NA prediction 0.541211343421653 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18161623 chr6:18161622 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18049 0 0 0 0 2 KDM1B chr6:18161558 3'AG 18161558 Downstream 65bp 17039 chr6 18161622 18161622 1 + G T UCEC 18161623 + 18161603 18161643 41 GGCTCAGAGAAGAAGTACAGGAAATGTGAAAAGGCAGGCTG GGCTCAGAGAAGAAGTACATGAAATGTGAAAAGGCAGGCTG < 41bp 0.590791043573496 0.861396715284323 NA NA prediction 0.541211343421653 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18161623 chr6:18161622 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18049 0 0 0 0 2 KDM1B chr6:18161685 5'GT 18161685 Upstream 64bp 17040 chr3 134851646 134851646 1 + G T LUAD 134851647 + 134851627 134851667 41 CCAAGGGAGACAGGTGGGCGGGATGATGTGACCTACAACAT CCAAGGGAGACAGGTGGGCTGGATGATGTGACCTACAACAT < 41bp 0.437562413211466 0.770590878788867 NA NA prediction 0.541181757577734 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134851647 chr3:134851646 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_18052 0 0 0 0 1 EPHB1 chr3:134851556 3'AG 134851556 Downstream 91bp 17041 chr22 33253319 33253319 1 + G T UCEC 33253320 + 33253300 33253340 41 TCTGTGGCCTTAAGCTGGAGGTCAACAAGTACCAGTACCTG TCTGTGGCCTTAAGCTGGATGTCAACAAGTACCAGTACCTG < 41bp 0.579532859661164 0.850108080500055 NA NA prediction 0.541150441677781 Functional Gain - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33253320 chr22:33253319 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_18054 0 0 1 0 2 TIMP3 chr22:33253236 3'AG 33253236 Downstream 84bp 17042 chr22 33253319 33253319 1 + G T UCEC 33253320 + 33253300 33253340 41 TCTGTGGCCTTAAGCTGGAGGTCAACAAGTACCAGTACCTG TCTGTGGCCTTAAGCTGGATGTCAACAAGTACCAGTACCTG < 41bp 0.579532859661164 0.850108080500055 NA NA prediction 0.541150441677781 Functional Gain - TIMP3 ENSG00000100234 CDS Human protein_coding chr22:33253320 chr22:33253319 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_18054 0 0 1 0 2 TIMP3 chr22:33253347 5'GT 33253347 Upstream 29bp 17043 chr17 27067543 27067543 1 + G T STAD 27067544 + 27067524 27067564 41 GCAGGTGCCCATGCCCCCAGGACAGGAAGCTCAGCGAGTTG GCAGGTGCCCATGCCCCCATGACAGGAAGCTCAGCGAGTTG < 41bp 0.598440715442473 0.869015320235546 NA NA prediction 0.541149209586146 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27067544 chr17:27067543 stopgain 0.999 1 20 hm7G_associated_SNPs_18055 0 0 1 0 2 NEK8 chr17:27067481 3'AG 27067481 Downstream 63bp 17044 chr17 27067543 27067543 1 + G T STAD 27067544 + 27067524 27067564 41 GCAGGTGCCCATGCCCCCAGGACAGGAAGCTCAGCGAGTTG GCAGGTGCCCATGCCCCCATGACAGGAAGCTCAGCGAGTTG < 41bp 0.598440715442473 0.869015320235546 NA NA prediction 0.541149209586146 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27067544 chr17:27067543 stopgain 0.999 1 20 hm7G_associated_SNPs_18055 0 0 1 0 2 NEK8 chr17:27067631 5'GT 27067631 Upstream 89bp 17045 chr9 136227264 136227264 1 + G T KIRP 136227265 + 136227245 136227285 41 AAGGCCACTGATGAGAGCAGGAGAGAGACGACCGTGTACCG AAGGCCACTGATGAGAGCATGAGAGAGACGACCGTGTACCG < 41bp 0.578293261549587 0.84884180512739 NA NA prediction 0.541097087155606 Functional Gain - SURF2 ENSG00000148291 CDS Human protein_coding chr9:136227265 chr9:136227264 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_18056 0 0 0 0 1 SURF2 chr9:136227310 5'GT 136227310 Upstream 47bp 17046 chr13 53624150 53624150 1 + G T BRCA 53624151 + 53624131 53624171 41 ACATCAGCAAACCGTCTGTGGTTCAGCTCAACTGGAGAGGG ACATCAGCAAACCGTCTGTTGTTCAGCTCAACTGGAGAGGG < 41bp 0.469086038229633 0.770545209790692 NA NA prediction 0.541090419581383 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53624151 chr13:53624150 synonymous SNV . 0 20 hm7G_associated_SNPs_18057 0 0 0 0 1 OLFM4 chr13:53624104 3'AG 53624104 Downstream 47bp 17047 chr19 18273829 18273829 1 + G T COAD 18273830 + 18273810 18273850 41 CCACCGAGATGGGCACTATGGCTTCTCAGAGCCACTCACCT CCACCGAGATGGGCACTATTGCTTCTCAGAGCCACTCACCT < 41bp 0.426413699731791 0.770535597462818 NA NA prediction 0.541071194925636 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18273830 chr19:18273829 nonsynonymous SNV 0.969 5 20 hm7G_associated_SNPs_18058 0 0 0 0 1 PIK3R2 chr19:18273777 3'AG 18273777 Downstream 53bp 17048 chr11 5624518 5624518 1 + G T UCEC 5624519 + 5624499 5624539 41 TAGAAATCAGGGTTGGGCAGGCAGGAGCCAGGAGAGTAGCT TAGAAATCAGGGTTGGGCATGCAGGAGCCAGGAGAGTAGCT < 41bp 0.573417858539817 0.843951602523161 NA NA prediction 0.541067487966686 Functional Gain - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5624519 chr11:5624518 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_18059 0 0 0 0 1 TRIM6;TRIM6-TRIM34 chr11:5624476 3'AG 5624476 Downstream 43bp 17049 chr7 143017799 143017799 1 + G T LUAD 143017800 + 143017780 143017820 41 GTGGTGAGAAGAAAATTAGGGGAAGACGGGATCTTTCTGGT GTGGTGAGAAGAAAATTAGTGGAAGACGGGATCTTTCTGGT < 41bp 0.594501733864508 0.865028767090625 NA NA prediction 0.541054066452235 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143017800 chr7:143017799 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_18060 0 0 0 0 1 CLCN1 chr7:143017757 3'AG 143017757 Downstream 43bp 17050 chr1 155257088 155257088 1 + G T GBM 155257089 + 155257069 155257109 41 AGTTCCCCATGATGCGCCGGGCCTTTGAGACTGTGGCCATG AGTTCCCCATGATGCGCCGTGCCTTTGAGACTGTGGCCATG < 41bp 0.601385030893069 0.871896519259226 NA NA prediction 0.541022976732314 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155257089 chr1:155257088 synonymous SNV . 0 20 hm7G_associated_SNPs_18063 0 0 1 0 1 HCN3 chr1:155257128 5'GT 155257128 Upstream 41bp 17051 chr3 102189268 102189268 1 + G T LUAD 102189269 + 102189249 102189289 41 CAGAGAAAGGAGAGATGCTGGGAGGAGGACGACTTGGAGCC CAGAGAAAGGAGAGATGCTTGGAGGAGGACGACTTGGAGCC < 41bp 0.576383799659309 0.846889659772556 NA NA prediction 0.541011720226495 Functional Gain - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189269 chr3:102189268 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_18065 0 0 0 0 2 ZPLD1 chr3:102189238 3'AG 102189238 Downstream 31bp 17052 chr3 102189268 102189268 1 + G T LUAD 102189269 + 102189249 102189289 41 CAGAGAAAGGAGAGATGCTGGGAGGAGGACGACTTGGAGCC CAGAGAAAGGAGAGATGCTTGGAGGAGGACGACTTGGAGCC < 41bp 0.576383799659309 0.846889659772556 NA NA prediction 0.541011720226495 Functional Gain - ZPLD1 ENSG00000170044 CDS Human protein_coding chr3:102189269 chr3:102189268 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_18065 0 0 0 0 2 ZPLD1 chr3:102189346 5'GT 102189346 Upstream 79bp 17053 chr5 120021745 120021745 1 + G T HNSC 120021746 + 120021726 120021766 41 GCTGAATAGTAGCTCAAGTGGCACAACAGCCTCCAGCCTAG GCTGAATAGTAGCTCAAGTTGCACAACAGCCTCCAGCCTAG < 41bp 0.566761551474532 0.837256572347332 NA NA prediction 0.540990041745601 Functional Gain - PRR16 ENSG00000184838 CDS Human protein_coding chr5:120021746 chr5:120021745 nonsynonymous SNV 0.355 3 20 hm7G_associated_SNPs_18067 0 0 0 0 1 PRR16 chr5:120021649 3'AG 120021649 Downstream 97bp 17054 chr3 138188919 138188919 1 + G T UCEC 138188920 + 138188900 138188940 41 AGACCTGTCCCCACAACAAGGACCCTGTGTGGAGCCAGGTG AGACCTGTCCCCACAACAATGACCCTGTGTGGAGCCAGGTG < 41bp 0.592446790604796 0.86294114443363 NA NA prediction 0.540988707657668 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138188920 chr3:138188919 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18068 0 0 0 1 2 ESYT3 chr3:138188902 3'AG 138188902 Downstream 18bp 17055 chr3 138188919 138188919 1 + G T UCEC 138188920 + 138188900 138188940 41 AGACCTGTCCCCACAACAAGGACCCTGTGTGGAGCCAGGTG AGACCTGTCCCCACAACAATGACCCTGTGTGGAGCCAGGTG < 41bp 0.592446790604796 0.86294114443363 NA NA prediction 0.540988707657668 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138188920 chr3:138188919 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18068 0 0 0 1 2 ESYT3 chr3:138188988 5'GT 138188988 Upstream 70bp 17056 chr6 96984130 96984130 1 + G T COAD 96984131 + 96984111 96984151 41 TGTTTTAAGCTGTGCTTGAGGAACTTGTTAATAGCGGACGC TGTTTTAAGCTGTGCTTGATGAACTTGTTAATAGCGGACGC < 41bp 0.559859600664255 0.830352800974367 NA NA prediction 0.540986400620225 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96984131 chr6:96984130 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_18069 0 0 0 0 1 UFL1 chr6:96984120 3'AG 96984120 Downstream 11bp 17057 chr9 2645013 2645013 1 + G T UCEC 2645014 + 2644994 2645034 41 AATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTA AATTTGTATCAACTTAAAATGCGGTTACAAGTGTGAATGTA < 41bp 0.573268792547548 0.843749340748872 NA NA prediction 0.540961096402648 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2645014 chr9:2645013 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18071 0 0 0 4 2 VLDLR chr9:2644957 3'AG 2644957 Downstream 57bp 17058 chr9 2645013 2645013 1 + G T UCEC 2645014 + 2644994 2645034 41 AATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTA AATTTGTATCAACTTAAAATGCGGTTACAAGTGTGAATGTA < 41bp 0.573268792547548 0.843749340748872 NA NA prediction 0.540961096402648 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2645014 chr9:2645013 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18071 0 0 0 4 2 VLDLR chr9:2645082 5'GT 2645082 Upstream 70bp 17059 chr5 67591250 67591250 1 + G T UCEC 67591251 + 67591231 67591271 41 TCAAAACTGTTTTTCAGGTGGTTGACTCAAAAAGGTGTTCG TCAAAACTGTTTTTCAGGTTGTTGACTCAAAAAGGTGTTCG < 41bp 0.474414061298874 0.770467426896958 NA NA prediction 0.540934853793916 Functional Gain - PIK3R1 ENSG00000145675 CDS Human protein_coding chr5:67591251 chr5:67591250 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18073 0 0 1 0 1 PIK3R1 chr5:67591248 3'AG 67591248 Downstream 3bp 17060 chr20 36993349 36993349 1 + G T LUAD 36993350 + 36993330 36993370 41 CGGATTATGTCTTCAACACGGCCAGCCTGGTTTATCATGAG CGGATTATGTCTTCAACACTGCCAGCCTGGTTTATCATGAG < 41bp 0.44219966325082 0.770403839300042 NA NA prediction 0.540807678600085 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36993350 chr20:36993349 synonymous SNV . 0 20 hm7G_associated_SNPs_18079 0 0 0 0 1 LBP chr20:36993406 5'GT 36993406 Upstream 58bp 17061 chr20 13765861 13765861 1 + G T COAD 13765862 + 13765842 13765882 41 CCCTGAATATTTTCGACCGGGATTTGAAAAGGAAACAGAAG CCCTGAATATTTTCGACCGTGATTTGAAAAGGAAACAGAAG < 41bp 0.564104318145711 0.834505127794798 NA NA prediction 0.540801619298174 Functional Gain - NDUFAF5 ENSG00000101247 CDS Human protein_coding chr20:13765862 chr20:13765861 synonymous SNV . 0 20 hm7G_associated_SNPs_18080 0 0 1 0 1 NDUFAF5 chr20:13765936 5'GT 13765936 Upstream 76bp 17062 chr1 231339738 231339738 1 + G T COAD 231339739 + 231339719 231339759 41 CATCCTGGAGCTGGACGACGGTGCCGGGGGACAGTTCCGGG CATCCTGGAGCTGGACGACTGTGCCGGGGGACAGTTCCGGG < 41bp 0.575920514824391 0.846319683206565 NA NA prediction 0.540798336764349 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231339739 chr1:231339738 nonsynonymous SNV 0.012 4 20 hm7G_associated_SNPs_18081 0 0 0 0 1 TRIM67 chr1:231339758 5'GT 231339758 Upstream 21bp 17063 chr6 161491735 161491735 1 + G T LUSC 161491736 + 161491716 161491756 41 AATGCAGTGCTGTGTCGTGGGAGGAGCTGAAGGCCATGGAT AATGCAGTGCTGTGTCGTGTGAGGAGCTGAAGGCCATGGAT < 41bp 0.438966604248663 0.770392510477029 NA NA prediction 0.540785020954058 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161491736 chr6:161491735 nonsynonymous SNV 0.773 4 20 hm7G_associated_SNPs_18082 0 0 1 0 1 MAP3K4 chr6:161491640 3'AG 161491640 Downstream 96bp 17064 chr2 207425919 207425919 1 + G T UCEC 207425920 + 207425900 207425940 41 TGTCTGTTCTCGCACAAGAGGAGTTGGTGTGAATGAGGTAA TGTCTGTTCTCGCACAAGATGAGTTGGTGTGAATGAGGTAA < 41bp 0.455618036563955 0.770386905324815 NA NA prediction 0.54077381064963 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207425920 chr2:207425919 stopgain 1.000 1 20 hm7G_associated_SNPs_18084 0 0 0 0 2 ADAM23 chr2:207425852 3'AG 207425852 Downstream 68bp 17065 chr2 207425919 207425919 1 + G T UCEC 207425920 + 207425900 207425940 41 TGTCTGTTCTCGCACAAGAGGAGTTGGTGTGAATGAGGTAA TGTCTGTTCTCGCACAAGATGAGTTGGTGTGAATGAGGTAA < 41bp 0.455618036563955 0.770386905324815 NA NA prediction 0.54077381064963 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207425920 chr2:207425919 stopgain 1.000 1 20 hm7G_associated_SNPs_18084 0 0 0 0 2 ADAM23 chr2:207425936 5'GT 207425936 Upstream 18bp 17066 chr13 48916758 48916758 1 + G T UCEC 48916759 + 48916739 48916779 41 GTTATATTCAAAAGAAAAAGGAACTGTGGGGAATCTGTATC GTTATATTCAAAAGAAAAATGAACTGTGGGGAATCTGTATC < 41bp 0.567954582131582 0.838340691129899 NA NA prediction 0.540772217996634 Functional Gain - RB1 ENSG00000139687 CDS Human protein_coding chr13:48916759 chr13:48916758 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_18085 0 0 1 0 2 RB1 chr13:48916735 3'AG 48916735 Downstream 24bp 17067 chr13 48916758 48916758 1 + G T UCEC 48916759 + 48916739 48916779 41 GTTATATTCAAAAGAAAAAGGAACTGTGGGGAATCTGTATC GTTATATTCAAAAGAAAAATGAACTGTGGGGAATCTGTATC < 41bp 0.567954582131582 0.838340691129899 NA NA prediction 0.540772217996634 Functional Gain - RB1 ENSG00000139687 CDS Human protein_coding chr13:48916759 chr13:48916758 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_18085 0 0 1 0 2 RB1 chr13:48916850 5'GT 48916850 Upstream 93bp 17068 chr19 58963047 58963047 1 + G T rs116959667 58963048 + 58963028 58963068 41 GGCTGTGGCGCGCGGGTCGGGGCCCGAGGCGGGCGGCCAGG GGCTGTGGCGCGCGGGTCGTGGCCCGAGGCGGGCGGCCAGG < 41bp 0.45505839943819 0.770358373346781 NA NA prediction 0.540716746693561 Functional Gain - ZNF324B ENSG00000249471 UTR5 Human protein_coding chr19:58963048 chr19:58963047 . . 0 20 hm7G_associated_SNPs_18089 0 0 0 0 1 ZNF324B chr19:58963071 5'GT 58963071 Upstream 25bp 17069 chr3 108326951 108326951 1 + G T UCEC 108326952 + 108326932 108326972 41 ATAGGCATCCTGCTGTGGAGGATCAGAGGAAGGAAGAAACT ATAGGCATCCTGCTGTGGATGATCAGAGGAAGGAAGAAACT < 41bp 0.565565121625119 0.835919104396788 NA NA prediction 0.540707965543337 Functional Gain - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108326952 chr3:108326951 nonsynonymous SNV 0.667 2 20 hm7G_associated_SNPs_18090 0 0 1 0 1 DZIP3 chr3:108327005 5'GT 108327005 Upstream 55bp 17070 chr2 228144535 228144535 1 + G T UCEC 228144536 + 228144516 228144556 41 AGGTTTTCCAGGTACAAAAGGATCACTGGGTTGTCCTGGAA AGGTTTTCCAGGTACAAAATGATCACTGGGTTGTCCTGGAA < 41bp 0.443272921318624 0.770351881034771 NA NA prediction 0.540703762069543 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228144536 chr2:228144535 stopgain 0.991 1 20 hm7G_associated_SNPs_18091 0 0 0 0 2 COL4A3 chr2:228144509 3'AG 228144509 Downstream 27bp 17071 chr2 228144535 228144535 1 + G T UCEC 228144536 + 228144516 228144556 41 AGGTTTTCCAGGTACAAAAGGATCACTGGGTTGTCCTGGAA AGGTTTTCCAGGTACAAAATGATCACTGGGTTGTCCTGGAA < 41bp 0.443272921318624 0.770351881034771 NA NA prediction 0.540703762069543 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228144536 chr2:228144535 stopgain 0.991 1 20 hm7G_associated_SNPs_18091 0 0 0 0 2 COL4A3 chr2:228144606 5'GT 228144606 Upstream 72bp 17072 chr11 134182780 134182780 1 + G T LUAD 134182781 + 134182761 134182801 41 CTGCACATTCCTGAACTCAGGGTATGTAATTTGAGAGTCCA CTGCACATTCCTGAACTCATGGTATGTAATTTGAGAGTCCA < 41bp 0.445151271431332 0.770336280766602 NA NA prediction 0.540672561533204 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182781 chr11:134182780 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_18093 0 0 0 3 1 GLB1L3 chr11:134182710 3'AG 134182710 Downstream 71bp 17073 chr5 156638359 156638359 1 + G T LUAD 156638360 + 156638340 156638380 41 CGTGAGAGCCGGCAGCGCTGGGTGCTGGCCCTTAAAGAAGG CGTGAGAGCCGGCAGCGCTTGGTGCTGGCCCTTAAAGAAGG < 41bp 0.444999929044506 0.770333903130738 NA NA prediction 0.540667806261476 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156638360 chr5:156638359 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18094 0 0 0 0 2 ITK chr5:156638298 3'AG 156638298 Downstream 62bp 17074 chr5 156638359 156638359 1 + G T LUAD 156638360 + 156638340 156638380 41 CGTGAGAGCCGGCAGCGCTGGGTGCTGGCCCTTAAAGAAGG CGTGAGAGCCGGCAGCGCTTGGTGCTGGCCCTTAAAGAAGG < 41bp 0.444999929044506 0.770333903130738 NA NA prediction 0.540667806261476 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156638360 chr5:156638359 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18094 0 0 0 0 2 ITK chr5:156638379 5'GT 156638379 Upstream 21bp 17075 chr3 122864993 122864993 1 + G T TGCT 122864994 + 122864974 122865014 41 CCACTGTCAACAAGGCCCTGGCAGAAAGATTCCACATCTCA CCACTGTCAACAAGGCCCTTGCAGAAAGATTCCACATCTCA < 41bp 0.592811127463841 0.863140770029644 NA NA prediction 0.540659285131605 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122864994 chr3:122864993 synonymous SNV . 0 20 hm7G_associated_SNPs_18095 0 0 0 0 2 PDIA5 chr3:122864946 3'AG 122864946 Downstream 48bp 17076 chr3 122864993 122864993 1 + G T TGCT 122864994 + 122864974 122865014 41 CCACTGTCAACAAGGCCCTGGCAGAAAGATTCCACATCTCA CCACTGTCAACAAGGCCCTTGCAGAAAGATTCCACATCTCA < 41bp 0.592811127463841 0.863140770029644 NA NA prediction 0.540659285131605 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122864994 chr3:122864993 synonymous SNV . 0 20 hm7G_associated_SNPs_18095 0 0 0 0 2 PDIA5 chr3:122864965 3'AG 122864965 Downstream 29bp 17077 chr3 30715617 30715617 1 + G T BLCA 30715618 + 30715598 30715638 41 TGGGAACTGCAAGATACATGGCTCCAGAAGTCCTAGAATCC TGGGAACTGCAAGATACATTGCTCCAGAAGTCCTAGAATCC < 41bp 0.592303952142187 0.862618027789708 NA NA prediction 0.540628151295043 Functional Gain - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30715618 chr3:30715617 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18098 0 0 1 0 1 TGFBR2 chr3:30715597 3'AG 30715597 Downstream 21bp 17078 chr9 82324604 82324604 1 + G T UCEC 82324605 + 82324585 82324625 41 AAACCTGACAGGCATTCCAGGAGGAAAACCGTGAGTACCTT AAACCTGACAGGCATTCCATGAGGAAAACCGTGAGTACCTT < 41bp 0.446031765182043 0.770299568727626 NA NA prediction 0.540599137455252 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82324605 chr9:82324604 stopgain 1.000 1 20 hm7G_associated_SNPs_18100 0 0 0 0 2 TLE4 chr9:82324538 3'AG 82324538 Downstream 67bp 17079 chr9 82324604 82324604 1 + G T UCEC 82324605 + 82324585 82324625 41 AAACCTGACAGGCATTCCAGGAGGAAAACCGTGAGTACCTT AAACCTGACAGGCATTCCATGAGGAAAACCGTGAGTACCTT < 41bp 0.446031765182043 0.770299568727626 NA NA prediction 0.540599137455252 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82324605 chr9:82324604 stopgain 1.000 1 20 hm7G_associated_SNPs_18100 0 0 0 0 2 TLE4 chr9:82324614 5'GT 82324614 Upstream 11bp 17080 chr16 57238827 57238827 1 + G T SKCM 57238828 + 57238808 57238848 41 CCTGTTCGGCCACCAAGGAGGGGCCGAGGACCTCATGAGCC CCTGTTCGGCCACCAAGGATGGGCCGAGGACCTCATGAGCC < 41bp 0.455401432561202 0.770299533534978 NA NA prediction 0.540599067069957 Functional Gain - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57238828 chr16:57238827 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18101 0 0 1 0 1 RSPRY1 chr16:57238920 5'GT 57238920 Upstream 94bp 17081 chr10 71016804 71016804 1 + G T UCEC 71016805 + 71016785 71016825 41 CTTTCAGGGAACACTCATAGGGTGGACCAAAGGTTTCAAGG CTTTCAGGGAACACTCATATGGTGGACCAAAGGTTTCAAGG < 41bp 0.590356875762674 0.860656352463311 NA NA prediction 0.540598953401273 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71016805 chr10:71016804 nonsynonymous SNV 0.929 2 20 hm7G_associated_SNPs_18102 0 0 0 0 2 HKDC1 chr10:71016792 3'AG 71016792 Downstream 13bp 17082 chr10 71016804 71016804 1 + G T UCEC 71016805 + 71016785 71016825 41 CTTTCAGGGAACACTCATAGGGTGGACCAAAGGTTTCAAGG CTTTCAGGGAACACTCATATGGTGGACCAAAGGTTTCAAGG < 41bp 0.590356875762674 0.860656352463311 NA NA prediction 0.540598953401273 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71016805 chr10:71016804 nonsynonymous SNV 0.929 2 20 hm7G_associated_SNPs_18102 0 0 0 0 2 HKDC1 chr10:71016887 5'GT 71016887 Upstream 84bp 17083 chr7 97833482 97833482 1 + G T HNSC 97833483 + 97833463 97833503 41 TCACACACCTGACCGACTCGGACATCGAGCAGGGCGGTGAG TCACACACCTGACCGACTCTGACATCGAGCAGGGCGGTGAG < 41bp 0.584649591158247 0.854948179286293 NA NA prediction 0.540597176256093 Functional Gain - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97833483 chr7:97833482 synonymous SNV . 0 20 hm7G_associated_SNPs_18103 0 0 0 0 1 LMTK2 chr7:97833498 5'GT 97833498 Upstream 17bp 17084 chr19 51297750 51297750 1 + G T UCEC 51297751 + 51297731 51297771 41 GGCCCTCCAGGGGGCCCTGGGCCTCTATGATGGACACACCC GGCCCTCCAGGGGGCCCTGTGCCTCTATGATGGACACACCC < 41bp 0.599862731900866 0.870157730597957 NA NA prediction 0.540589997394181 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51297751 chr19:51297750 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_18104 0 0 0 0 1 ACPT chr19:51297714 3'AG 51297714 Downstream 37bp 17085 chr22 38453849 38453849 1 + G T UCEC 38453850 + 38453830 38453870 41 TGGATTATGACATCGAAGAGGATAAACTGTGAGTATTTTAT TGGATTATGACATCGAAGATGATAAACTGTGAGTATTTTAT < 41bp 0.451628666736718 0.770285201427118 NA NA prediction 0.540570402854237 Functional Gain - PICK1 ENSG00000100151 CDS Human antisense chr22:38453850 chr22:38453849 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_18106 0 0 1 0 2 PICK1 chr22:38453760 3'AG 38453760 Downstream 90bp 17086 chr22 38453849 38453849 1 + G T UCEC 38453850 + 38453830 38453870 41 TGGATTATGACATCGAAGAGGATAAACTGTGAGTATTTTAT TGGATTATGACATCGAAGATGATAAACTGTGAGTATTTTAT < 41bp 0.451628666736718 0.770285201427118 NA NA prediction 0.540570402854237 Functional Gain - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38453850 chr22:38453849 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_18106 0 0 1 0 2 PICK1 chr22:38453857 5'GT 38453857 Upstream 9bp 17087 chr12 20786672 20786672 1 + G T SARC 20786673 + 20786653 20786693 41 ATCCTGCTGATGAGCCCCTGGAGAGAAGTGGGGTAGCCACT ATCCTGCTGATGAGCCCCTTGAGAGAAGTGGGGTAGCCACT < 41bp 0.593085981007043 0.863369967999428 NA NA prediction 0.54056797398477 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20786673 chr12:20786672 synonymous SNV . 0 20 hm7G_associated_SNPs_18107 0 0 1 0 2 PDE3A chr12:20786627 3'AG 20786627 Downstream 46bp 17088 chr12 20786672 20786672 1 + G T SARC 20786673 + 20786653 20786693 41 ATCCTGCTGATGAGCCCCTGGAGAGAAGTGGGGTAGCCACT ATCCTGCTGATGAGCCCCTTGAGAGAAGTGGGGTAGCCACT < 41bp 0.593085981007043 0.863369967999428 NA NA prediction 0.54056797398477 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20786673 chr12:20786672 synonymous SNV . 0 20 hm7G_associated_SNPs_18107 0 0 1 0 2 PDE3A chr12:20786712 5'GT 20786712 Upstream 41bp 17089 chr1 210001421 210001421 1 + G T MESO 210001422 + 210001402 210001442 41 TTTCGCTATGGGCAAACGCGGGAGCCGGAGCCAGAGCCAGC TTTCGCTATGGGCAAACGCTGGAGCCGGAGCCAGAGCCAGC < 41bp 0.55690725776514 0.827189581861157 NA NA prediction 0.540564648192033 Functional Gain - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210001422 chr1:210001421 nonsynonymous SNV 0.534 2 20 hm7G_associated_SNPs_18108 0 0 1 0 1 DIEXF chr1:210001515 5'GT 210001515 Upstream 95bp 17090 chr16 21181907 21181907 1 + G T LUAD 21181908 + 21181888 21181928 41 CCACCCTGGCTGCTCTGCTGGGGGTCATAATATTGGAAGGT CCACCCTGGCTGCTCTGCTTGGGGTCATAATATTGGAAGGT < 41bp 0.452565080015033 0.770266918303264 NA NA prediction 0.540533836606528 Functional Gain - TMEM159 ENSG00000011638 CDS Human protein_coding chr16:21181908 chr16:21181907 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_18110 0 0 1 0 1 TMEM159 chr16:21181926 5'GT 21181926 Upstream 20bp 17091 chr9 72741118 72741118 1 + G T GBM 72741119 + 72741099 72741139 41 TTTATGTGAAGCACTTCCAGGAGGTGGCACAGCTCATCTCC TTTATGTGAAGCACTTCCATGAGGTGGCACAGCTCATCTCC < 41bp 0.43526357650414 0.770246498424585 NA NA prediction 0.54049299684917 Functional Gain - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72741119 chr9:72741118 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18112 0 0 0 0 1 MAMDC2 chr9:72741075 3'AG 72741075 Downstream 44bp 17092 chr2 233897550 233897550 1 + G T UCEC 233897551 + 233897531 233897571 41 GCTGATTGTCCTGCGCAGAGGAGACTACGACGCACCCACCC GCTGATTGTCCTGCGCAGATGAGACTACGACGCACCCACCC < 41bp 0.574572306483918 0.844817761026456 NA NA prediction 0.540490909085075 Functional Gain - NEU2 ENSG00000115488 CDS Human protein_coding chr2:233897551 chr2:233897550 stopgain 0.446 0 20 hm7G_associated_SNPs_18113 0 0 0 0 1 NEU2 chr2:233897582 5'GT 233897582 Upstream 33bp 17093 chr10 72513573 72513573 1 + G T KIRP 72513574 + 72513554 72513594 41 AGGTGGGTGACGGAGGAGTGGGGTGCCTGCAGCCGGAGCTG AGGTGGGTGACGGAGGAGTTGGGTGCCTGCAGCCGGAGCTG < 41bp 0.422356534910816 0.770198868682495 NA NA prediction 0.54039773736499 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72513574 chr10:72513573 nonsynonymous SNV 0.740 4 20 hm7G_associated_SNPs_18119 0 0 1 0 1 ADAMTS14 chr10:72513556 3'AG 72513556 Downstream 18bp 17094 chr1 210267704 210267704 1 + G T UCEC 210267705 + 210267685 210267725 41 TGAGAAGAACACCCCCGCTGGATGAATTGCAGCCACCACCA TGAGAAGAACACCCCCGCTTGATGAATTGCAGCCACCACCA < 41bp 0.451765651136905 0.770177622475799 NA NA prediction 0.540355244951599 Functional Gain - SYT14 ENSG00000143469 CDS Human protein_coding chr1:210267705 chr1:210267704 synonymous SNV . 0 20 hm7G_associated_SNPs_18120 0 0 0 0 1 SYT14 chr1:210267667 3'AG 210267667 Downstream 38bp 17095 chr11 58956686 58956686 1 + G T HNSC 58956687 + 58956667 58956707 41 CTGCCTGTGTGTCTCACCAGGCCACCAAAGCTGGTCCTACA CTGCCTGTGTGTCTCACCATGCCACCAAAGCTGGTCCTACA < 41bp 0.599441273480976 0.869613083002892 NA NA prediction 0.540343619043831 Functional Gain - DTX4 ENSG00000110042 CDS Human protein_coding chr11:58956687 chr11:58956686 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_18121 0 0 0 0 1 DTX4 chr11:58956635 3'AG 58956635 Downstream 52bp 17096 chrX 14927061 14927061 1 + G T UCEC 14927062 + 14927042 14927082 41 CAAGCAAAAATGAAGTCCAGGACTATGTCAGTGTAGAATAC CAAGCAAAAATGAAGTCCATGACTATGTCAGTGTAGAATAC < 41bp 0.570299046355113 0.840460376326551 NA NA prediction 0.540322659942876 Functional Gain - MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14927062 chrX:14927061 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18122 0 0 1 0 2 MOSPD2 chrX:14926982 3'AG 14926982 Downstream 80bp 17097 chrX 14927061 14927061 1 + G T UCEC 14927062 + 14927042 14927082 41 CAAGCAAAAATGAAGTCCAGGACTATGTCAGTGTAGAATAC CAAGCAAAAATGAAGTCCATGACTATGTCAGTGTAGAATAC < 41bp 0.570299046355113 0.840460376326551 NA NA prediction 0.540322659942876 Functional Gain - MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14927062 chrX:14927061 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18122 0 0 1 0 2 MOSPD2 chrX:14927106 5'GT 14927106 Upstream 46bp 17098 chr11 22283794 22283794 1 + G T COAD 22283795 + 22283775 22283815 41 CTTTAAAGGGAAGTTCGTAGGCTATCCTGGAAAATACACAT CTTTAAAGGGAAGTTCGTATGCTATCCTGGAAAATACACAT < 41bp 0.45868068323152 0.770149692835979 NA NA prediction 0.540299385671958 Functional Gain - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22283795 chr11:22283794 nonsynonymous SNV 0.951 4 20 hm7G_associated_SNPs_18124 0 0 1 0 1 ANO5 chr11:22283844 5'GT 22283844 Upstream 51bp 17099 chr7 17378620 17378620 1 + G T COAD 17378621 + 17378601 17378641 41 CAATTTTAGAGATGAGGAAGGAACAGAGCATTTACGAAAAC CAATTTTAGAGATGAGGAATGAACAGAGCATTTACGAAAAC < 41bp 0.477560214949891 0.770121318577012 NA NA prediction 0.540242637154024 Functional Gain - AHR ENSG00000106546 CDS Human protein_coding chr7:17378621 chr7:17378620 stopgain 0.930 1 20 hm7G_associated_SNPs_18126 0 0 0 0 1 AHR chr7:17378610 3'AG 17378610 Downstream 11bp 17100 chr12 1005269 1005269 1 + G T SARC 1005270 + 1005250 1005290 41 CAGACGGTGCCCAGAAAGAGGGTAAAAATAAGTCAGAAGAT CAGACGGTGCCCAGAAAGATGGTAAAAATAAGTCAGAAGAT < 41bp 0.457774379893225 0.770103298432075 NA NA prediction 0.540206596864151 Functional Gain - WNK1 ENSG00000060237 CDS Human protein_coding chr12:1005270 chr12:1005269 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_18128 0 0 1 0 1 WNK1 chr12:1005237 3'AG 1005237 Downstream 33bp 17101 chr5 122163095 122163095 1 + G T LUAD 122163096 + 122163076 122163116 41 GGAGGCGAAAGTGCAACAAGGGGAAAGAGATTTTGAACAGA GGAGGCGAAAGTGCAACAATGGGAAAGAGATTTTGAACAGA < 41bp 0.568991240001089 0.839085985040192 NA NA prediction 0.540189490078206 Functional Gain - SNX2 ENSG00000205302 CDS Human protein_coding chr5:122163096 chr5:122163095 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18130 0 0 1 0 1 SNX2 chr5:122163074 3'AG 122163074 Downstream 22bp 17102 chr2 44021646 44021646 1 + G T LUSC 44021647 + 44021627 44021667 41 TCAAAACCTAATGATCTCTGGCCCACCATGGAAAATCTCTT TCAAAACCTAATGATCTCTTGCCCACCATGGAAAATCTCTT < 41bp 0.501284607540297 0.771377448104963 NA NA prediction 0.540185681129332 Functional Gain - DYNC2LI1 ENSG00000138036 CDS Human protein_coding chr2:44021647 chr2:44021646 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18131 0 0 1 0 1 DYNC2LI1 chr2:44021596 3'AG 44021596 Downstream 51bp 17103 chr11 74914002 74914002 1 + G T UCEC 74914003 + 74913983 74914023 41 ATCCAGTTCATGTTCCTGAGGATTTTGGGTAAAGATCTTGC ATCCAGTTCATGTTCCTGATGATTTTGGGTAAAGATCTTGC < 41bp 0.584814947425537 0.854906952040315 NA NA prediction 0.540184009229557 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74914003 chr11:74914002 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_18132 0 0 1 0 2 SLCO2B1 chr11:74913946 3'AG 74913946 Downstream 57bp 17104 chr11 74914002 74914002 1 + G T UCEC 74914003 + 74913983 74914023 41 ATCCAGTTCATGTTCCTGAGGATTTTGGGTAAAGATCTTGC ATCCAGTTCATGTTCCTGATGATTTTGGGTAAAGATCTTGC < 41bp 0.584814947425537 0.854906952040315 NA NA prediction 0.540184009229557 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74914003 chr11:74914002 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_18132 0 0 1 0 2 SLCO2B1 chr11:74914010 5'GT 74914010 Upstream 9bp 17105 chr5 40958161 40958161 1 + G T LUAD 40958162 + 40958142 40958182 41 CTTTATATGAGCTGGTAAAGGAAGTACCTTGTGCCTCTGTG CTTTATATGAGCTGGTAAATGAAGTACCTTGTGCCTCTGTG < 41bp 0.461051320366552 0.770090861292501 NA NA prediction 0.540181722585001 Functional Gain - C7 ENSG00000112936 CDS Human protein_coding chr5:40958162 chr5:40958161 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18133 0 0 0 0 1 C7 chr5:40958135 3'AG 40958135 Downstream 27bp 17106 chr4 154542943 154542943 1 + G T UCEC 154542944 + 154542924 154542964 41 TACAGGAAAGCACTAGGGAGGTTTGTAAAGCAGATGCCGAA TACAGGAAAGCACTAGGGATGTTTGTAAAGCAGATGCCGAA < 41bp 0.455154626860369 0.770076461309042 NA NA prediction 0.540152922618085 Functional Gain - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154542944 chr4:154542943 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_18134 0 0 1 0 1 TMEM131L chr4:154543001 5'GT 154543001 Upstream 59bp 17107 chr20 2847088 2847088 1 + G T UCEC 2847089 + 2847069 2847109 41 ACCACAGCGATGTGGCTCAGGCTGCAGATGTGGCCATCGAA ACCACAGCGATGTGGCTCATGCTGCAGATGTGGCCATCGAA < 41bp 0.590109397770795 0.860180405916742 NA NA prediction 0.540142016291894 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2847089 chr20:2847088 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_18135 0 0 1 0 1 VPS16 chr20:2847076 3'AG 2847076 Downstream 13bp 17108 chr6 74210321 74210321 1 + G T LUSC 74210322 + 74210302 74210342 41 GGCTGCTAGTCGCATACCCGGAGTAACACCTGCCGCCATCA GGCTGCTAGTCGCATACCCTGAGTAACACCTGCCGCCATCA < 41bp 0.457811623694239 0.770054477435296 NA NA prediction 0.540108954870591 Functional Gain - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74210322 chr6:74210321 stopgain 0.997 1 20 hm7G_associated_SNPs_18136 0 0 1 0 1 MTO1 chr6:74210297 3'AG 74210297 Downstream 25bp 17109 chr11 125616250 125616250 1 + G T SARC 125616251 + 125616231 125616271 41 TCCTGCTCTGCTGCTTTAGGGGTGAGTCCCTAGGGTTGACA TCCTGCTCTGCTGCTTTAGTGGTGAGTCCCTAGGGTTGACA < 41bp 0.560500918263447 0.83055520294638 NA NA prediction 0.540108569365866 Functional Gain - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125616251 chr11:125616250 nonsynonymous SNV 0.012 1 20 hm7G_associated_SNPs_18137 0 0 0 0 1 PATE1 chr11:125616251 5'GT 125616251 Upstream 2bp 17110 chr14 23239424 23239424 1 + G T LUAD 23239425 + 23239405 23239445 41 ACAAGGCTTCCTCGGAGATGGCACTTTACCAGAAAAAACAT ACAAGGCTTCCTCGGAGATTGCACTTTACCAGAAAAAACAT < 41bp 0.437719292638988 0.770054025563312 NA NA prediction 0.540108051126624 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239425 chr14:23239424 nonsynonymous SNV 0.057 1 20 hm7G_associated_SNPs_18138 0 0 1 7 2 OXA1L chr14:23239402 3'AG 23239402 Downstream 23bp 17111 chr14 23239424 23239424 1 + G T LUAD 23239425 + 23239405 23239445 41 ACAAGGCTTCCTCGGAGATGGCACTTTACCAGAAAAAACAT ACAAGGCTTCCTCGGAGATTGCACTTTACCAGAAAAAACAT < 41bp 0.437719292638988 0.770054025563312 NA NA prediction 0.540108051126624 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23239425 chr14:23239424 nonsynonymous SNV 0.057 1 20 hm7G_associated_SNPs_18138 0 0 1 7 2 OXA1L chr14:23239487 5'GT 23239487 Upstream 64bp 17112 chrX 13332661 13332661 1 + G T rs139971712 13332662 + 13332642 13332682 41 GGTCCCTATCAGGAAGCAGGGCTGCTCTGCAGGTCAAGGCT GGTCCCTATCAGGAAGCAGTGCTGCTCTGCAGGTCAAGGCT < 41bp 0.44624798795306 0.770050546518216 NA NA prediction 0.540101093036433 Functional Gain - GS1-600G8.3 ENSG00000231216 ncRNA_exonic Human antisense chrX:13332662 chrX:13332661 . . 0 20 hm7G_associated_SNPs_18140 0 0 0 0 2 GS1-600G8.3 chrX:13332608 3'AG 13332608 Downstream 54bp 17113 chrX 13332661 13332661 1 + G T rs139971712 13332662 + 13332642 13332682 41 GGTCCCTATCAGGAAGCAGGGCTGCTCTGCAGGTCAAGGCT GGTCCCTATCAGGAAGCAGTGCTGCTCTGCAGGTCAAGGCT < 41bp 0.44624798795306 0.770050546518216 NA NA prediction 0.540101093036433 Functional Gain - GS1-600G8.3 ENSG00000231216 ncRNA_exonic Human antisense chrX:13332662 chrX:13332661 . . 0 20 hm7G_associated_SNPs_18140 0 0 0 0 2 GS1-600G8.3 chrX:13332732 5'GT 13332732 Upstream 72bp 17114 chr5 7897055 7897055 1 + G T OV 7897056 + 7897036 7897076 41 GCTGCAGGCATAAGGATAGGGATTATCTATTCAGGTATTGT GCTGCAGGCATAAGGATAGTGATTATCTATTCAGGTATTGT < 41bp 0.464780342500925 0.770042117496441 NA NA prediction 0.540084234992881 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7897056 chr5:7897055 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_18143 0 0 1 0 2 MTRR chr5:7896977 3'AG 7896977 Downstream 79bp 17115 chr5 7897055 7897055 1 + G T OV 7897056 + 7897036 7897076 41 GCTGCAGGCATAAGGATAGGGATTATCTATTCAGGTATTGT GCTGCAGGCATAAGGATAGTGATTATCTATTCAGGTATTGT < 41bp 0.464780342500925 0.770042117496441 NA NA prediction 0.540084234992881 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7897056 chr5:7897055 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_18143 0 0 1 0 2 MTRR chr5:7897069 5'GT 7897069 Upstream 15bp 17116 chr5 145890103 145890103 1 + G T COAD 145890104 + 145890084 145890124 41 TACTGGACTGTGTGCCAGAGGAGAGGCGTAAACTGATTGTG TACTGGACTGTGTGCCAGATGAGAGGCGTAAACTGATTGTG < 41bp 0.471670505973148 0.770041219024227 NA NA prediction 0.540082438048453 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145890104 chr5:145890103 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_18144 0 0 1 0 1 TCERG1 chr5:145890004 3'AG 145890004 Downstream 100bp 17117 chr16 2200002 2200002 1 + G T UCEC 2200003 + 2199983 2200023 41 GCTGGTGCGATTCAAGGATGGTGCTTTCCTGGCGGGGACCT GCTGGTGCGATTCAAGGATTGTGCTTTCCTGGCGGGGACCT < 41bp 0.592605172568941 0.862644113058702 NA NA prediction 0.540077880979523 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2200003 chr16:2200002 nonsynonymous SNV 0.588 3 20 hm7G_associated_SNPs_18146 0 0 1 0 2 RAB26 chr16:2199942 3'AG 2199942 Downstream 61bp 17118 chr16 2200002 2200002 1 + G T UCEC 2200003 + 2199983 2200023 41 GCTGGTGCGATTCAAGGATGGTGCTTTCCTGGCGGGGACCT GCTGGTGCGATTCAAGGATTGTGCTTTCCTGGCGGGGACCT < 41bp 0.592605172568941 0.862644113058702 NA NA prediction 0.540077880979523 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2200003 chr16:2200002 nonsynonymous SNV 0.588 3 20 hm7G_associated_SNPs_18146 0 0 1 0 2 RAB26 chr16:2200052 5'GT 2200052 Upstream 51bp 17119 chr20 2542536 2542536 1 + G T BLCA 2542537 + 2542517 2542557 41 GCCTCCAGTGCCTCTGGTGGGGAGTCCCTGTCCGAGGAGGA GCCTCCAGTGCCTCTGGTGTGGAGTCCCTGTCCGAGGAGGA < 41bp 0.427863176496473 0.770038386106784 NA NA prediction 0.540076772213567 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2542537 chr20:2542536 nonsynonymous SNV 0.438 0 20 hm7G_associated_SNPs_18147 0 0 0 0 1 TMC2 chr20:2542504 3'AG 2542504 Downstream 33bp 17120 chr20 3891227 3891227 1 + G T UCEC 3891228 + 3891208 3891248 41 TCTTATTTCATTACAGATAGGTGATCTTCAGCTTTGCAAAC TCTTATTTCATTACAGATATGTGATCTTCAGCTTTGCAAAC < 41bp 0.463802440898092 0.770007345714962 NA NA prediction 0.540014691429925 Functional Gain - PANK2 ENSG00000125779 CDS Human protein_coding chr20:3891228 chr20:3891227 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18150 0 0 1 4 1 PANK2 chr20:3891224 3'AG 3891224 Downstream 4bp 17121 chr16 72045979 72045979 1 + G T BLCA 72045980 + 72045960 72046000 41 GGATGCTGTGATCATCCTGGGGGGAGGAGGACTTCTCTTCG GGATGCTGTGATCATCCTGTGGGGAGGAGGACTTCTCTTCG < 41bp 0.589941577364308 0.859942593086094 NA NA prediction 0.540002031443571 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72045980 chr16:72045979 nonsynonymous SNV 0.986 5 20 hm7G_associated_SNPs_18154 0 0 0 0 1 DHODH chr16:72045949 3'AG 72045949 Downstream 31bp 17122 chr1 206858835 206858835 1 + G T UCEC 206858836 + 206858816 206858856 41 TCTTCAACAAGAGGACCCAGGAGAAATTCGCCCTCAAAGTA TCTTCAACAAGAGGACCCATGAGAAATTCGCCCTCAAAGTA < 41bp 0.445692625820426 0.769997794626514 NA NA prediction 0.539995589253028 Functional Gain - MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206858836 chr1:206858835 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_18155 0 0 1 0 1 MAPKAPK2 chr1:206858853 5'GT 206858853 Upstream 19bp 17123 chr5 176301080 176301080 1 + G T LUAD 176301081 + 176301061 176301101 41 TATTGCCGGAAGAAGGAGGGGCTGGACTCAGATGTGGCTGA TATTGCCGGAAGAAGGAGGTGCTGGACTCAGATGTGGCTGA < 41bp 0.594838190104966 0.864830851315767 NA NA prediction 0.539985322421602 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176301081 chr5:176301080 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_18156 0 0 0 0 1 UNC5A chr5:176301157 5'GT 176301157 Upstream 78bp 17124 chr4 128803016 128803016 1 + G T UCEC 128803017 + 128802997 128803037 41 TGGAAATCTGCTTGGTAAAGGATCATTTGCTGGTGTCTACA TGGAAATCTGCTTGGTAAATGATCATTTGCTGGTGTCTACA < 41bp 0.5668643629011 0.836855842291277 NA NA prediction 0.539982958780354 Functional Gain - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128803017 chr4:128803016 stopgain 1.000 1 20 hm7G_associated_SNPs_18157 0 0 1 0 2 PLK4 chr4:128802986 3'AG 128802986 Downstream 31bp 17125 chr4 128803016 128803016 1 + G T UCEC 128803017 + 128802997 128803037 41 TGGAAATCTGCTTGGTAAAGGATCATTTGCTGGTGTCTACA TGGAAATCTGCTTGGTAAATGATCATTTGCTGGTGTCTACA < 41bp 0.5668643629011 0.836855842291277 NA NA prediction 0.539982958780354 Functional Gain - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128803017 chr4:128803016 stopgain 1.000 1 20 hm7G_associated_SNPs_18157 0 0 1 0 2 PLK4 chr4:128803081 5'GT 128803081 Upstream 66bp 17126 chr1 55197295 55197295 1 + G T UCEC 55197296 + 55197276 55197316 41 AGTCTAGATGGCCAGGGCAGGCTGAGCTGGCCTGTGCTCTT AGTCTAGATGGCCAGGGCATGCTGAGCTGGCCTGTGCTCTT < 41bp 0.58916802988722 0.859150448368771 NA NA prediction 0.539964836963103 Functional Gain - TTC4 ENSG00000243725 CDS Human protein_coding chr1:55197296 chr1:55197295 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_18158 0 0 1 0 1 TTC4 chr1:55197373 5'GT 55197373 Upstream 79bp 17127 chr1 53927181 53927181 1 + G T LUAD 53927182 + 53927162 53927202 41 CAACCCGGACCGTGCACTGGGCCCTGAGTACCCTGGTGGCT CAACCCGGACCGTGCACTGTGCCCTGAGTACCCTGGTGGCT < 41bp 0.437156831578387 0.769976542815597 NA NA prediction 0.539953085631193 Functional Gain - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53927182 chr1:53927181 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_18159 0 0 0 0 1 DMRTB1 chr1:53927146 3'AG 53927146 Downstream 36bp 17128 chr20 35862430 35862430 1 + G T UCS 35862431 + 35862411 35862451 41 CCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTCCAA CCCATCATTCAGTGGATCCTGATTGGTGCCAATGTCTCCAA < 41bp 0.576492258449602 0.846461060473072 NA NA prediction 0.53993760404694 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862431 chr20:35862430 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18160 0 0 1 0 2 RPN2 chr20:35862423 3'AG 35862423 Downstream 8bp 17129 chr20 35862430 35862430 1 + G T UCS 35862431 + 35862411 35862451 41 CCCATCATTCAGTGGATCCGGATTGGTGCCAATGTCTCCAA CCCATCATTCAGTGGATCCTGATTGGTGCCAATGTCTCCAA < 41bp 0.576492258449602 0.846461060473072 NA NA prediction 0.53993760404694 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862431 chr20:35862430 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18160 0 0 1 0 2 RPN2 chr20:35862498 5'GT 35862498 Upstream 69bp 17130 chr1 153737175 153737175 1 + G T UCEC 153737176 + 153737156 153737196 41 CTTCTTGTAGGTCCCTGGAGGAGTCTGTAGGAAAGCCTCTG CTTCTTGTAGGTCCCTGGATGAGTCTGTAGGAAAGCCTCTG < 41bp 0.447644159773226 0.769956981851363 NA NA prediction 0.539913963702725 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153737176 chr1:153737175 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18161 0 0 1 0 2 INTS3 chr1:153737166 3'AG 153737166 Downstream 10bp 17131 chr1 153737175 153737175 1 + G T UCEC 153737176 + 153737156 153737196 41 CTTCTTGTAGGTCCCTGGAGGAGTCTGTAGGAAAGCCTCTG CTTCTTGTAGGTCCCTGGATGAGTCTGTAGGAAAGCCTCTG < 41bp 0.447644159773226 0.769956981851363 NA NA prediction 0.539913963702725 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153737176 chr1:153737175 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18161 0 0 1 0 2 INTS3 chr1:153737210 5'GT 153737210 Upstream 36bp 17132 chr1 169347609 169347609 1 + G T BRCA 169347610 + 169347590 169347630 41 TACTGGTGGCTTCTGTTGGGGATGATCTTCAGTATCACTTT TACTGGTGGCTTCTGTTGGTGATGATCTTCAGTATCACTTT < 41bp 0.467853954083622 0.769950634378818 NA NA prediction 0.539901268757636 Functional Gain - BLZF1 ENSG00000117475 CDS Human protein_coding chr1:169347610 chr1:169347609 synonymous SNV . 0 20 hm7G_associated_SNPs_18163 0 0 1 0 1 BLZF1 chr1:169347568 3'AG 169347568 Downstream 42bp 17133 chr19 58920521 58920521 1 + G T CESC 58920522 + 58920502 58920542 41 CCCGCACGGTCCAATGGCCGGGGAGGCGGAGGTGAGCAGAG CCCGCACGGTCCAATGGCCTGGGAGGCGGAGGTGAGCAGAG < 41bp 0.557628297666799 0.827577175810837 NA NA prediction 0.539897756288076 Functional Gain - ZNF584 ENSG00000171574 CDS Human protein_coding chr19:58920522 chr19:58920521 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_18164 0 0 1 0 1 ZNF584 chr19:58920532 5'GT 58920532 Upstream 12bp 17134 chr20 2380358 2380358 1 + G T UCEC 2380359 + 2380339 2380379 41 GTCAAGTACGGCCAGTGCTGGGTCTTCGCCGGAGTCCTGTG GTCAAGTACGGCCAGTGCTTGGTCTTCGCCGGAGTCCTGTG < 41bp 0.5887249362152 0.858672827350407 NA NA prediction 0.539895782270414 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2380359 chr20:2380358 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18165 0 0 0 0 1 TGM6 chr20:2380384 5'GT 2380384 Upstream 27bp 17135 chr16 67005131 67005131 1 + G T HNSC 67005132 + 67005112 67005152 41 AATACCTAGGAAGCAACTCGGACGCACAAGCCAAATGCCAG AATACCTAGGAAGCAACTCTGACGCACAAGCCAAATGCCAG < 41bp 0.447155086258091 0.769947311038969 NA NA prediction 0.539894622077937 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67005132 chr16:67005131 synonymous SNV . 0 20 hm7G_associated_SNPs_18166 0 0 1 0 2 CES3 chr16:67005075 3'AG 67005075 Downstream 57bp 17136 chr16 67005131 67005131 1 + G T HNSC 67005132 + 67005112 67005152 41 AATACCTAGGAAGCAACTCGGACGCACAAGCCAAATGCCAG AATACCTAGGAAGCAACTCTGACGCACAAGCCAAATGCCAG < 41bp 0.447155086258091 0.769947311038969 NA NA prediction 0.539894622077937 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67005132 chr16:67005131 synonymous SNV . 0 20 hm7G_associated_SNPs_18166 0 0 1 0 2 CES3 chr16:67005222 5'GT 67005222 Upstream 92bp 17137 chr1 202150906 202150906 1 + G T rs10920355 202150907 + 202150887 202150927 41 TGCTGGAGGCGGGTGAAGGGGCAGAGGTGAGTGGGAGGGAA TGCTGGAGGCGGGTGAAGGTGCAGAGGTGAGTGGGAGGGAA < 41bp 0.477199246047445 0.769936481139408 NA NA prediction 0.539872962278816 Functional Gain - PTPRVP ENSG00000243323 ncRNA_exonic Human processed_transcript chr1:202150907 chr1:202150906 . . 0 20 hm7G_associated_SNPs_18168 0 0 0 0 1 PTPRVP chr1:202150912 5'GT 202150912 Upstream 7bp 17138 chr19 36353471 36353471 1 + G T OV 36353472 + 36353452 36353492 41 TTATGGTCATCACTGGGGTGGCCCTCTGCTGCTGGCGCCAC TTATGGTCATCACTGGGGTTGCCCTCTGCTGCTGGCGCCAC < 41bp 0.430053465218955 0.76992182189258 NA NA prediction 0.539843643785161 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36353472 chr19:36353471 synonymous SNV . 0 20 hm7G_associated_SNPs_18169 0 0 0 0 1 KIRREL2 chr19:36353395 3'AG 36353395 Downstream 77bp 17139 chr9 133491878 133491878 1 + G T UCEC 133491879 + 133491859 133491899 41 GGGTCTGGTCATCGGCAGAGGAGGGGAAACAATCAAGCAGT GGGTCTGGTCATCGGCAGATGAGGGGAAACAATCAAGCAGT < 41bp 0.443175053415146 0.769921193120891 NA NA prediction 0.539842386241781 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133491879 chr9:133491878 stopgain 1.000 1 20 hm7G_associated_SNPs_18170 0 0 1 0 1 FUBP3 chr9:133491904 5'GT 133491904 Upstream 27bp 17140 chr1 182785877 182785877 1 + G T LUAD 182785878 + 182785858 182785898 41 TTAATTTCCTAAAGGAAGTGGCTGCTGCCGCCCCTGCCCTG TTAATTTCCTAAAGGAAGTTGCTGCTGCCGCCCCTGCCCTG < 41bp 0.588797579157602 0.858695982780096 NA NA prediction 0.539796807244988 Functional Gain - NPL ENSG00000135838 CDS Human protein_coding chr1:182785878 chr1:182785877 synonymous SNV . 0 20 hm7G_associated_SNPs_18172 0 0 0 0 1 NPL chr1:182785849 3'AG 182785849 Downstream 29bp 17141 chr2 202005146 202005146 1 - C A PAAD 202005145 - 202005125 202005165 41 CACCCTGAAGTTATTTGAAGGATCCTTGAGACTCTTTTGGA CACCCTGAAGTTATTTGAATGATCCTTGAGACTCTTTTGGA < 41bp 0.544676456047735 0.814568520448535 NA NA prediction 0.5397841288016 Functional Gain - CFLAR ENSG00000003402 CDS Human protein_coding chr2:202005145 chr2:202005146 nonsynonymous SNV 0.419 0 20 hm7G_associated_SNPs_18174 0 0 0 0 1 CFLAR-AS1 chr2:202005168 3'AG 202005168 Downstream 23bp 17142 chrX 11136723 11136723 1 + G T SARC 11136724 + 11136704 11136744 41 GGAAGGAGATTTTGAAGTGGGAAGCCCTTCATGCTGCGTAA GGAAGGAGATTTTGAAGTGTGAAGCCCTTCATGCTGCGTAA < 41bp 0.573995639387429 0.843880847745738 NA NA prediction 0.539770416716618 Functional Gain - HCCS ENSG00000004961 CDS Human protein_coding chrX:11136724 chrX:11136723 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18175 0 0 1 0 1 HCCS chrX:11136740 5'GT 11136740 Upstream 18bp 17143 chr15 45707850 45707850 1 + G T THCA 45707851 + 45707831 45707871 41 ATGAAATTGATTCAATCTTGGGAGCTCGCTCAGCCAGCAAG ATGAAATTGATTCAATCTTTGGAGCTCGCTCAGCCAGCAAG < 41bp 0.588897097986699 0.858761319275123 NA NA prediction 0.539728442576848 Functional Gain - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45707851 chr15:45707850 nonsynonymous SNV 0.963 1 20 hm7G_associated_SNPs_18178 0 0 1 2 1 SPATA5L1 chr15:45707785 3'AG 45707785 Downstream 66bp 17144 chr7 94049556 94049556 1 + G T LUAD 94049557 + 94049537 94049577 41 CATTATAGGGCGAAGCTGGGGCTGCTGGTCCTGCTGGTCCT CATTATAGGGCGAAGCTGGTGCTGCTGGTCCTGCTGGTCCT < 41bp 0.441296627774165 0.769849007698799 NA NA prediction 0.539698015397599 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94049557 chr7:94049556 synonymous SNV . 0 20 hm7G_associated_SNPs_18180 0 0 0 0 2 COL1A2 chr7:94049545 3'AG 94049545 Downstream 12bp 17145 chr7 94049556 94049556 1 + G T LUAD 94049557 + 94049537 94049577 41 CATTATAGGGCGAAGCTGGGGCTGCTGGTCCTGCTGGTCCT CATTATAGGGCGAAGCTGGTGCTGCTGGTCCTGCTGGTCCT < 41bp 0.441296627774165 0.769849007698799 NA NA prediction 0.539698015397599 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94049557 chr7:94049556 synonymous SNV . 0 20 hm7G_associated_SNPs_18180 0 0 0 0 2 COL1A2 chr7:94049598 5'GT 94049598 Upstream 43bp 17146 chr8 26441374 26441374 1 + G T LUAD 26441375 + 26441355 26441395 41 ACCATCGAGGCCCACTCCCGGATGGTGATCCCCGGAGGAAT ACCATCGAGGCCCACTCCCTGATGGTGATCCCCGGAGGAAT < 41bp 0.596892971127964 0.866739141050222 NA NA prediction 0.539692339844515 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441375 chr8:26441374 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_18181 0 0 1 0 1 DPYSL2 chr8:26441315 3'AG 26441315 Downstream 60bp 17147 chr16 72130817 72130817 1 + G T LUAD 72130818 + 72130798 72130838 41 AGAGAGAGCGGGAGCGGCGGGAACATGGTGTCTATGCCTCG AGAGAGAGCGGGAGCGGCGTGAACATGGTGTCTATGCCTCG < 41bp 0.589105726249396 0.858948060723548 NA NA prediction 0.539684668948305 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72130818 chr16:72130817 synonymous SNV . 0 20 hm7G_associated_SNPs_18183 0 0 1 1 1 DHX38 chr16:72130908 5'GT 72130908 Upstream 92bp 17148 chr2 108608580 108608580 1 + G T LUSC 108608581 + 108608561 108608601 41 GCTACCTGGGTCGGAGGAGGGTATATCAATGGCACAGCTGA GCTACCTGGGTCGGAGGAGTGTATATCAATGGCACAGCTGA < 41bp 0.46678305186418 0.769839774196791 NA NA prediction 0.539679548393582 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108608581 chr2:108608580 nonsynonymous SNV 0.964 5 20 hm7G_associated_SNPs_18184 0 0 0 0 2 SLC5A7 chr2:108608562 3'AG 108608562 Downstream 19bp 17149 chr2 108608580 108608580 1 + G T LUSC 108608581 + 108608561 108608601 41 GCTACCTGGGTCGGAGGAGGGTATATCAATGGCACAGCTGA GCTACCTGGGTCGGAGGAGTGTATATCAATGGCACAGCTGA < 41bp 0.46678305186418 0.769839774196791 NA NA prediction 0.539679548393582 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108608581 chr2:108608580 nonsynonymous SNV 0.964 5 20 hm7G_associated_SNPs_18184 0 0 0 0 2 SLC5A7 chr2:108608675 5'GT 108608675 Upstream 96bp 17150 chr19 18092529 18092529 1 + G T OV 18092530 + 18092510 18092550 41 CTCCACAGCTGTTCATGGTGGACAACGGGGCTGATGACTGG CTCCACAGCTGTTCATGGTTGACAACGGGGCTGATGACTGG < 41bp 0.589727481993835 0.859563093662161 NA NA prediction 0.539671223336652 Functional Gain - KCNN1 ENSG00000105642 CDS Human protein_coding chr19:18092530 chr19:18092529 synonymous SNV . 0 20 hm7G_associated_SNPs_18187 0 0 0 0 1 KCNN1 chr19:18092518 3'AG 18092518 Downstream 12bp 17151 chr1 46876074 46876074 1 + G T UCEC 46876075 + 46876055 46876095 41 CATTTTGTTTCCCAGCAAAGGTGATTTCGTGGACCCCTGCC CATTTTGTTTCCCAGCAAATGTGATTTCGTGGACCCCTGCC < 41bp 0.444385011521791 0.769823058252231 NA NA prediction 0.539646116504462 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46876075 chr1:46876074 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_18189 0 0 0 0 2 FAAH chr1:46876070 3'AG 46876070 Downstream 5bp 17152 chr1 46876074 46876074 1 + G T UCEC 46876075 + 46876055 46876095 41 CATTTTGTTTCCCAGCAAAGGTGATTTCGTGGACCCCTGCC CATTTTGTTTCCCAGCAAATGTGATTTCGTGGACCCCTGCC < 41bp 0.444385011521791 0.769823058252231 NA NA prediction 0.539646116504462 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46876075 chr1:46876074 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_18189 0 0 0 0 2 FAAH chr1:46876169 5'GT 46876169 Upstream 96bp 17153 chr17 58233934 58233934 1 + G T ACC 58233935 + 58233915 58233955 41 GCTCAGTGCCAGTCAAGTGGGGTGGAAACTGCCAGAAGGAC GCTCAGTGCCAGTCAAGTGTGGTGGAAACTGCCAGAAGGAC < 41bp 0.587895894431777 0.857717674016758 NA NA prediction 0.539643559169964 Functional Gain - CA4 ENSG00000167434 CDS Human protein_coding chr17:58233935 chr17:58233934 nonsynonymous SNV 0.016 4 20 hm7G_associated_SNPs_18190 0 0 0 1 1 CA4 chr17:58233921 3'AG 58233921 Downstream 14bp 17154 chr1 163043364 163043364 1 + G T UCEC 163043365 + 163043345 163043385 41 CATCTAAACTAAGTCCCAAGGCCAAAAAGATCTATAATGAA CATCTAAACTAAGTCCCAATGCCAAAAAGATCTATAATGAA < 41bp 0.572507233143509 0.842326081260284 NA NA prediction 0.53963769623355 Functional Gain - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163043365 chr1:163043364 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18191 0 0 0 0 1 RGS4 chr1:163043412 5'GT 163043412 Upstream 49bp 17155 chr8 30242665 30242665 1 + G T CESC 30242666 + 30242646 30242686 41 CGAGCGAGGCCAACCTTCAGGAGGAGGAGGTACTGGGCGGC CGAGCGAGGCCAACCTTCATGAGGAGGAGGTACTGGGCGGC < 41bp 0.449030998222963 0.769803527983605 NA NA prediction 0.53960705596721 Functional Gain - RBPMS ENSG00000157110 CDS Human protein_coding chr8:30242666 chr8:30242665 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_18196 0 0 1 0 1 RBPMS chr8:30242674 5'GT 30242674 Upstream 10bp 17156 chr13 106124955 106124955 1 + G T LUAD 106124956 + 106124936 106124976 41 GAAGAGAAGGCATGAGGACGGCTATTTGGAAATGGCACAGA GAAGAGAAGGCATGAGGACTGCTATTTGGAAATGGCACAGA < 41bp 0.568875477926812 0.83866258493513 NA NA prediction 0.539574214016636 Functional Gain - DAOA ENSG00000182346 CDS Human protein_coding chr13:106124956 chr13:106124955 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_18198 0 0 0 0 2 DAOA chr13:106124887 3'AG 106124887 Downstream 69bp 17157 chr13 106124955 106124955 1 + G T LUAD 106124956 + 106124936 106124976 41 GAAGAGAAGGCATGAGGACGGCTATTTGGAAATGGCACAGA GAAGAGAAGGCATGAGGACTGCTATTTGGAAATGGCACAGA < 41bp 0.568875477926812 0.83866258493513 NA NA prediction 0.539574214016636 Functional Gain - DAOA ENSG00000182346 CDS Human protein_coding chr13:106124956 chr13:106124955 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_18198 0 0 0 0 2 DAOA chr13:106124892 3'AG 106124892 Downstream 64bp 17158 chr19 7570993 7570993 1 + G T COAD 7570994 + 7570974 7571014 41 GCCCTTCAGAGTGGAGACAGGTGCAGAAAGCGCCCAACCTC GCCCTTCAGAGTGGAGACATGTGCAGAAAGCGCCCAACCTC < 41bp 0.581348927370874 0.85110837920022 NA NA prediction 0.539518903658693 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7570994 chr19:7570993 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_18202 0 0 0 0 1 TEX45 chr19:7571051 5'GT 7571051 Upstream 59bp 17159 chr6 41898440 41898440 1 + G T THCA 41898441 + 41898421 41898461 41 ATCCCTGCACTCTCCAACTGGGAGCAAATCCTCTACGTCAC ATCCCTGCACTCTCCAACTTGGAGCAAATCCTCTACGTCAC < 41bp 0.59563184865913 0.865391262582815 NA NA prediction 0.53951882784737 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41898441 chr6:41898440 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_18203 0 0 1 0 2 BYSL chr6:41898373 3'AG 41898373 Downstream 68bp 17160 chr6 41898440 41898440 1 + G T THCA 41898441 + 41898421 41898461 41 ATCCCTGCACTCTCCAACTGGGAGCAAATCCTCTACGTCAC ATCCCTGCACTCTCCAACTTGGAGCAAATCCTCTACGTCAC < 41bp 0.59563184865913 0.865391262582815 NA NA prediction 0.53951882784737 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41898441 chr6:41898440 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_18203 0 0 1 0 2 BYSL chr6:41898506 5'GT 41898506 Upstream 67bp 17161 chr7 12683933 12683933 1 + G T UCEC 12683934 + 12683914 12683954 41 TAAGGATCCAAGAAGGCGAGGAGCCAGGTGTGTGCTCTGGG TAAGGATCCAAGAAGGCGATGAGCCAGGTGTGTGCTCTGGG < 41bp 0.574041875500292 0.843791915522776 NA NA prediction 0.539500080044968 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12683934 chr7:12683933 nonsynonymous SNV 0.947 0 20 hm7G_associated_SNPs_18205 0 0 0 0 1 SCIN chr7:12683940 5'GT 12683940 Upstream 8bp 17162 chr20 2306517 2306517 1 + G T UCEC 2306518 + 2306498 2306538 41 TTTCCATGTCTGGAATGAAGGCTGGTTTGTGAGGTCTGACC TTTCCATGTCTGGAATGAATGCTGGTTTGTGAGGTCTGACC < 41bp 0.586380628396329 0.856127984470411 NA NA prediction 0.539494712148164 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2306518 chr20:2306517 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_18207 0 0 0 0 2 TGM3 chr20:2306495 3'AG 2306495 Downstream 23bp 17163 chr20 2306517 2306517 1 + G T UCEC 2306518 + 2306498 2306538 41 TTTCCATGTCTGGAATGAAGGCTGGTTTGTGAGGTCTGACC TTTCCATGTCTGGAATGAATGCTGGTTTGTGAGGTCTGACC < 41bp 0.586380628396329 0.856127984470411 NA NA prediction 0.539494712148164 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2306518 chr20:2306517 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_18207 0 0 0 0 2 TGM3 chr20:2306598 5'GT 2306598 Upstream 82bp 17164 chr6 43414021 43414021 1 + G T UCEC 43414022 + 43414002 43414042 41 TGGCCTTCCCTAGGTTTGAGGAGGAGAACCTGCGACTCCTT TGGCCTTCCCTAGGTTTGATGAGGAGAACCTGCGACTCCTT < 41bp 0.441688357349674 0.769744097123546 NA NA prediction 0.539488194247092 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43414022 chr6:43414021 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_18208 0 0 1 0 1 ABCC10 chr6:43414015 3'AG 43414015 Downstream 7bp 17165 chr1 156347124 156347124 1 + G T LUSC 156347125 + 156347105 156347145 41 GCATGCCATGGTCTTCGTGGGCTTTGGCTTCCTCATGGTCT GCATGCCATGGTCTTCGTGTGCTTTGGCTTCCTCATGGTCT < 41bp 0.43917532307443 0.769743187140568 NA NA prediction 0.539486374281136 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347125 chr1:156347124 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18209 0 0 0 0 1 RHBG chr1:156347092 3'AG 156347092 Downstream 33bp 17166 chr16 89973675 89973675 1 + G T LUSC 89973676 + 89973656 89973696 41 GACCACGCAGTCTGTGATGGGGTTTGATCCTCTGCCTCCTT GACCACGCAGTCTGTGATGTGGTTTGATCCTCTGCCTCCTT < 41bp 0.440648722671861 0.769737347299012 NA NA prediction 0.539474694598024 Functional Gain - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89973676 chr16:89973675 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18210 0 0 1 0 2 TCF25 chr16:89973651 3'AG 89973651 Downstream 25bp 17167 chr16 89973675 89973675 1 + G T LUSC 89973676 + 89973656 89973696 41 GACCACGCAGTCTGTGATGGGGTTTGATCCTCTGCCTCCTT GACCACGCAGTCTGTGATGTGGTTTGATCCTCTGCCTCCTT < 41bp 0.440648722671861 0.769737347299012 NA NA prediction 0.539474694598024 Functional Gain - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89973676 chr16:89973675 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18210 0 0 1 0 2 TCF25 chr16:89973730 5'GT 89973730 Upstream 56bp 17168 chr5 112103041 112103041 1 + G T GBM 112103042 + 112103022 112103062 41 AAGAAGAGGGTTTGTAAATGGAAGCAGAGAAAGTACTGGAT AAGAAGAGGGTTTGTAAATTGAAGCAGAGAAAGTACTGGAT < 41bp 0.54029397215419 0.810027195458396 NA NA prediction 0.53946644660841 Functional Gain - APC ENSG00000134982 CDS Human protein_coding chr5:112103042 chr5:112103041 stopgain 0.995 1 20 hm7G_associated_SNPs_18211 0 0 1 0 1 APC chr5:112103087 5'GT 112103087 Upstream 47bp 17169 chr1 8385397 8385397 1 + G T LIHC 8385398 + 8385378 8385418 41 TTGGGTGCTTGGAGTGACCGGTGTACCTCAAGGTTTGGAAG TTGGGTGCTTGGAGTGACCTGTGTACCTCAAGGTTTGGAAG < 41bp 0.440793317986826 0.769696953897716 NA NA prediction 0.539393907795433 Functional Gain - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8385398 chr1:8385397 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18215 0 0 0 0 2 SLC45A1 chr1:8385358 3'AG 8385358 Downstream 40bp 17170 chr1 8385397 8385397 1 + G T LIHC 8385398 + 8385378 8385418 41 TTGGGTGCTTGGAGTGACCGGTGTACCTCAAGGTTTGGAAG TTGGGTGCTTGGAGTGACCTGTGTACCTCAAGGTTTGGAAG < 41bp 0.440793317986826 0.769696953897716 NA NA prediction 0.539393907795433 Functional Gain - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8385398 chr1:8385397 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18215 0 0 0 0 2 SLC45A1 chr1:8385450 5'GT 8385450 Upstream 54bp 17171 chr8 37688970 37688970 1 + G T ESCA 37688971 + 37688951 37688991 41 CTGTCTCACATCGGCGTGTGGGCCTCAGGCGAGTGGGAGTG CTGTCTCACATCGGCGTGTTGGCCTCAGGCGAGTGGGAGTG < 41bp 0.605697476834831 0.875381091123732 NA NA prediction 0.539367228577802 Functional Gain - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37688971 chr8:37688970 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_18217 0 0 0 0 1 ADGRA2 chr8:37688941 3'AG 37688941 Downstream 30bp 17172 chr10 121212759 121212759 1 + G T UCEC 121212760 + 121212740 121212780 41 TCCGGAACCGCCCAAGAAAGGGCTGCTCCAGAGACTCTTCA TCCGGAACCGCCCAAGAAATGGCTGCTCCAGAGACTCTTCA < 41bp 0.44374816122258 0.769664523384148 NA NA prediction 0.539329046768296 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121212760 chr10:121212759 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18219 0 0 0 0 1 GRK5 chr10:121212788 5'GT 121212788 Upstream 30bp 17173 chr21 48064292 48064292 1 + G T LUAD 48064293 + 48064273 48064313 41 GGTGGTGGGGTGAGCGTGCGGGCTGCTGTGGGTACATTCCG GGTGGTGGGGTGAGCGTGCTGGCTGCTGTGGGTACATTCCG < 41bp 0.435005975565951 0.769662062354998 NA NA prediction 0.539324124709995 Functional Gain - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48064293 chr21:48064292 synonymous SNV . 0 20 hm7G_associated_SNPs_18221 0 0 1 0 1 PRMT2 chr21:48064218 3'AG 48064218 Downstream 75bp 17174 chr17 72233577 72233577 1 + G T UCEC 72233578 + 72233558 72233598 41 CGTTGTTGTTCAGCTCTCAGGACTGCCCGTGTGGAGGGAGG CGTTGTTGTTCAGCTCTCATGACTGCCCGTGTGGAGGGAGG < 41bp 0.423341314788146 0.76966014578474 NA NA prediction 0.539320291569479 Functional Gain - TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72233578 chr17:72233577 stopgain 0.980 1 20 hm7G_associated_SNPs_18222 0 0 1 0 1 TTYH2 chr17:72233653 5'GT 72233653 Upstream 77bp 17175 chr11 63137867 63137867 1 + G T OV 63137868 + 63137848 63137888 41 ACACAAGTGACGCAGACATGGAGCCCTGTGTGGATGGCTGG ACACAAGTGACGCAGACATTGAGCCCTGTGTGGATGGCTGG < 41bp 0.449588265831514 0.769656440353663 NA NA prediction 0.539312880707327 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63137868 chr11:63137867 nonsynonymous SNV 0.319 1 20 hm7G_associated_SNPs_18223 0 0 1 0 1 SLC22A9 chr11:63137930 5'GT 63137930 Upstream 64bp 17176 chr2 27528631 27528631 1 + G T LUSC 27528632 + 27528612 27528652 41 TGGAGGCCTCCTCTAAGCTGGTGGAGTCTGCCATCCAGTCC TGGAGGCCTCCTCTAAGCTTGTGGAGTCTGCCATCCAGTCC < 41bp 0.445906326704753 0.769654284640634 NA NA prediction 0.539308569281268 Functional Gain - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27528632 chr2:27528631 synonymous SNV . 0 20 hm7G_associated_SNPs_18224 0 0 0 0 1 TRIM54 chr2:27528685 5'GT 27528685 Upstream 55bp 17177 chr4 5721057 5721057 1 + G T UCEC 5721058 + 5721038 5721078 41 GGCTCCCCATCAAGGAGGAGGAAGAGAGAAGTGCAGATGTC GGCTCCCCATCAAGGAGGATGAAGAGAGAAGTGCAGATGTC < 41bp 0.442553720812702 0.769644205341672 NA NA prediction 0.539288410683344 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5721058 chr4:5721057 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_18225 0 0 1 0 2 EVC chr4:5720975 3'AG 5720975 Downstream 83bp 17178 chr4 5721057 5721057 1 + G T UCEC 5721058 + 5721038 5721078 41 GGCTCCCCATCAAGGAGGAGGAAGAGAGAAGTGCAGATGTC GGCTCCCCATCAAGGAGGATGAAGAGAGAAGTGCAGATGTC < 41bp 0.442553720812702 0.769644205341672 NA NA prediction 0.539288410683344 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5721058 chr4:5721057 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_18225 0 0 1 0 2 EVC chr4:5721100 5'GT 5721100 Upstream 44bp 17179 chr11 100558561 100558561 1 + G T UCEC 100558562 + 100558542 100558582 41 CTGCTCATTGGGGCGTTGAGGAGTAAGTAGGGCTGGCGGGG CTGCTCATTGGGGCGTTGATGAGTAAGTAGGGCTGGCGGGG < 41bp 0.472448886069511 0.769632010300512 NA NA prediction 0.539264020601023 Functional Gain - ARHGAP42 ENSG00000165895 CDS Human protein_coding chr11:100558562 chr11:100558561 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_18226 0 0 0 0 1 ARHGAP42 chr11:100558563 5'GT 100558563 Upstream 3bp 17180 chr16 2988278 2988278 1 + G T COAD 2988279 + 2988259 2988299 41 AGGAAGGAGAAGGCGGCTGGGGAGAAGGTGTACTGGATGTG AGGAAGGAGAAGGCGGCTGTGGAGAAGGTGTACTGGATGTG < 41bp 0.599448817222933 0.869055537816546 NA NA prediction 0.539213441187225 Functional Gain - FLYWCH1 ENSG00000059122 CDS Human protein_coding chr16:2988279 chr16:2988278 nonsynonymous SNV 0.475 3 20 hm7G_associated_SNPs_18228 0 0 0 0 1 FLYWCH1 chr16:2988185 3'AG 2988185 Downstream 94bp 17181 chr11 69995881 69995881 1 + G T LUAD 69995882 + 69995862 69995902 41 CTACCGCTGGGACCTCACGGGCTTTGAAGAGGAAGAGGTCA CTACCGCTGGGACCTCACGTGCTTTGAAGAGGAAGAGGTCA < 41bp 0.599908914409949 0.869512637994227 NA NA prediction 0.539207447168556 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69995882 chr11:69995881 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_18229 0 0 0 0 2 ANO1 chr11:69995816 3'AG 69995816 Downstream 66bp 17182 chr11 69995881 69995881 1 + G T LUAD 69995882 + 69995862 69995902 41 CTACCGCTGGGACCTCACGGGCTTTGAAGAGGAAGAGGTCA CTACCGCTGGGACCTCACGTGCTTTGAAGAGGAAGAGGTCA < 41bp 0.599908914409949 0.869512637994227 NA NA prediction 0.539207447168556 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69995882 chr11:69995881 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_18229 0 0 0 0 2 ANO1 chr11:69995898 5'GT 69995898 Upstream 18bp 17183 chr14 66965116 66965116 1 + G T COAD 66965117 + 66965097 66965137 41 AGAACAACAAGGAACTAAAGGAAGTCAGCTTGATAATACAG AGAACAACAAGGAACTAAATGAAGTCAGCTTGATAATACAG < 41bp 0.494528749946809 0.769595801341736 NA NA prediction 0.539191602683472 Functional Gain - CCDC196 ENSG00000196553 ncRNA_exonic Human protein_coding chr14:66965117 chr14:66965116 . . 0 20 hm7G_associated_SNPs_18230 0 0 0 4 1 CCDC196 chr14:66965071 3'AG 66965071 Downstream 46bp 17184 chr1 159021793 159021793 1 + G T CESC 159021794 + 159021774 159021814 41 AAACATGGAGATCCCAAAAGGATTGATTAGAAGTGCCAGCG AAACATGGAGATCCCAAAATGATTGATTAGAAGTGCCAGCG < 41bp 0.562488679940106 0.83208207807548 NA NA prediction 0.539186796270747 Functional Gain - IFI16 ENSG00000163565 CDS Human protein_coding chr1:159021794 chr1:159021793 stopgain 0.000 0 20 hm7G_associated_SNPs_18231 0 0 0 0 1 IFI16 chr1:159021888 5'GT 159021888 Upstream 96bp 17185 chr13 113731454 113731454 1 + G T STAD 113731455 + 113731435 113731475 41 CTGAAGAAGCTGGCGGCCAGGCAGACGCGGCCCGTGCAGCC CTGAAGAAGCTGGCGGCCATGCAGACGCGGCCCGTGCAGCC < 41bp 0.427613810578629 0.769589834523806 NA NA prediction 0.539179669047611 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113731455 chr13:113731454 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_18233 0 0 1 0 2 MCF2L chr13:113731366 3'AG 113731366 Downstream 89bp 17186 chr13 113731454 113731454 1 + G T STAD 113731455 + 113731435 113731475 41 CTGAAGAAGCTGGCGGCCAGGCAGACGCGGCCCGTGCAGCC CTGAAGAAGCTGGCGGCCATGCAGACGCGGCCCGTGCAGCC < 41bp 0.427613810578629 0.769589834523806 NA NA prediction 0.539179669047611 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113731455 chr13:113731454 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_18233 0 0 1 0 2 MCF2L chr13:113731525 5'GT 113731525 Upstream 72bp 17187 chr15 75188616 75188616 1 + G T OV 75188617 + 75188597 75188637 41 CTGCTTACCCTGAAGCCTGGGGAGGCCATGTTTCTGGAGGC CTGCTTACCCTGAAGCCTGTGGAGGCCATGTTTCTGGAGGC < 41bp 0.434867700786105 0.76958938915737 NA NA prediction 0.53917877831474 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75188617 chr15:75188616 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_18234 0 0 0 0 1 MPI chr15:75188666 5'GT 75188666 Upstream 51bp 17188 chr17 4721623 4721623 1 + G T STAD 4721624 + 4721604 4721644 41 ATTAGCTGCTCAGATGGGCGGACGGTTCTGAACAAGGTGGG ATTAGCTGCTCAGATGGGCTGACGGTTCTGAACAAGGTGGG < 41bp 0.590094944768115 0.859680732543738 NA NA prediction 0.539171575551245 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4721624 chr17:4721623 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_18235 0 0 0 0 1 PLD2 chr17:4721592 3'AG 4721592 Downstream 32bp 17189 chr4 527729 527729 1 + G T LUSC 527730 + 527710 527750 41 ACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGTGCACTTC ACGCAGGGCCTGTGCTGTGTGCCAGCCACTTAGTGCACTTC < 41bp 0.431099879448984 0.769580695896366 NA NA prediction 0.539161391792732 Functional Gain - PIGG ENSG00000174227 CDS Human protein_coding chr4:527730 chr4:527729 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_18236 0 0 1 1 1 PIGG chr4:527770 5'GT 527770 Upstream 42bp 17190 chr12 110346736 110346736 1 + G T UCEC 110346737 + 110346717 110346757 41 GCACACAGCAGATCCAAGAGGAGCTGGTAAGTCTGAAGAGA GCACACAGCAGATCCAAGATGAGCTGGTAAGTCTGAAGAGA < 41bp 0.588885722747806 0.858453492644588 NA NA prediction 0.539135539793565 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110346737 chr12:110346736 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_18238 0 0 0 0 2 TCHP chr12:110346676 3'AG 110346676 Downstream 61bp 17191 chr12 110346736 110346736 1 + G T UCEC 110346737 + 110346717 110346757 41 GCACACAGCAGATCCAAGAGGAGCTGGTAAGTCTGAAGAGA GCACACAGCAGATCCAAGATGAGCTGGTAAGTCTGAAGAGA < 41bp 0.588885722747806 0.858453492644588 NA NA prediction 0.539135539793565 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110346737 chr12:110346736 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_18238 0 0 0 0 2 TCHP chr12:110346742 5'GT 110346742 Upstream 7bp 17192 chr19 45303674 45303674 1 + G T UCEC 45303675 + 45303655 45303695 41 CTCCCCTCCAGCTGCGCTGGGACCCCAGGACCCTGCCCCGG CTCCCCTCCAGCTGCGCTGTGACCCCAGGACCCTGCCCCGG < 41bp 0.585837184573894 0.85539733156725 NA NA prediction 0.539120293986711 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303675 chr19:45303674 stopgain 0.001 0 20 hm7G_associated_SNPs_18239 0 0 0 0 2 CBLC chr19:45303638 3'AG 45303638 Downstream 37bp 17193 chr19 45303674 45303674 1 + G T UCEC 45303675 + 45303655 45303695 41 CTCCCCTCCAGCTGCGCTGGGACCCCAGGACCCTGCCCCGG CTCCCCTCCAGCTGCGCTGTGACCCCAGGACCCTGCCCCGG < 41bp 0.585837184573894 0.85539733156725 NA NA prediction 0.539120293986711 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303675 chr19:45303674 stopgain 0.001 0 20 hm7G_associated_SNPs_18239 0 0 0 0 2 CBLC chr19:45303707 5'GT 45303707 Upstream 34bp 17194 chr3 30648379 30648379 1 + G T rs565502802 30648380 + 30648360 30648400 41 AGCAGCGGGGTCTGCCATGGGTCGGGGGCTGCTCAGGGGCC AGCAGCGGGGTCTGCCATGTGTCGGGGGCTGCTCAGGGGCC < 41bp 0.470930590776092 0.769555120239926 NA NA prediction 0.539110240479853 Functional Gain - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30648380 chr3:30648379 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18240 1 0 1 0 1 TGFBR2 chr3:30648469 5'GT 30648469 Upstream 91bp 17195 chr17 79206269 79206269 1 - C A rs61729866 79206268 - 79206248 79206288 41 TCCAGAAGGCCGCAGAGGTGGTGGCCAGCGCCATGCGCCCC TCCAGAAGGCCGCAGAGGTTGTGGCCAGCGCCATGCGCCCC < 41bp 0.437839546594684 0.769531468063652 NA NA prediction 0.539062936127304 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79206268 chr17:79206269 synonymous SNV . 0 20 hm7G_associated_SNPs_18245 0 0 1 0 1 TEPSIN chr17:79206318 3'AG 79206318 Downstream 50bp 17196 chr10 94399643 94399643 1 + G T BLCA 94399644 + 94399624 94399664 41 AACCACTTAGTAGTGTCCAGGAAAATATACAGCAGTAAGCT AACCACTTAGTAGTGTCCATGAAAATATACAGCAGTAAGCT < 41bp 0.552395577451207 0.821917707714101 NA NA prediction 0.539044260525789 Functional Gain - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94399644 chr10:94399643 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_18247 0 0 1 0 2 KIF11 chr10:94399551 3'AG 94399551 Downstream 93bp 17197 chr10 94399643 94399643 1 + G T BLCA 94399644 + 94399624 94399664 41 AACCACTTAGTAGTGTCCAGGAAAATATACAGCAGTAAGCT AACCACTTAGTAGTGTCCATGAAAATATACAGCAGTAAGCT < 41bp 0.552395577451207 0.821917707714101 NA NA prediction 0.539044260525789 Functional Gain - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94399644 chr10:94399643 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_18247 0 0 1 0 2 KIF11 chr10:94399657 5'GT 94399657 Upstream 15bp 17198 chr10 121432086 121432086 1 + G T LUAD 121432087 + 121432067 121432107 41 GTCCAGGGTGCATCGAGCCGGGAGGGCTCACCAGCCAGGAG GTCCAGGGTGCATCGAGCCTGGAGGGCTCACCAGCCAGGAG < 41bp 0.437912068414281 0.769518547074433 NA NA prediction 0.539037094148867 Functional Gain - BAG3 ENSG00000151929 CDS Human protein_coding chr10:121432087 chr10:121432086 nonsynonymous SNV 0.838 2 20 hm7G_associated_SNPs_18248 0 0 1 0 1 BAG3 chr10:121432168 5'GT 121432168 Upstream 83bp 17199 chrX 152097182 152097182 1 + G T ESCA 152097183 + 152097163 152097203 41 GGGCAGGACTCCGCCTGGTGGCCCCAGACGTGGAAGGCATG GGGCAGGACTCCGCCTGGTTGCCCCAGACGTGGAAGGCATG < 41bp 0.429665046380601 0.769506906673578 NA NA prediction 0.539013813347156 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152097183 chrX:152097182 synonymous SNV . 0 20 hm7G_associated_SNPs_18250 0 0 0 0 2 ZNF185 chrX:152097119 3'AG 152097119 Downstream 64bp 17200 chrX 152097182 152097182 1 + G T ESCA 152097183 + 152097163 152097203 41 GGGCAGGACTCCGCCTGGTGGCCCCAGACGTGGAAGGCATG GGGCAGGACTCCGCCTGGTTGCCCCAGACGTGGAAGGCATG < 41bp 0.429665046380601 0.769506906673578 NA NA prediction 0.539013813347156 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152097183 chrX:152097182 synonymous SNV . 0 20 hm7G_associated_SNPs_18250 0 0 0 0 2 ZNF185 chrX:152097205 5'GT 152097205 Upstream 24bp 17201 chr19 49102472 49102472 1 + G T LGG 49102473 + 49102453 49102493 41 CTACCGCAAGCAGATGCGGGGGATGCCGACCTTCCCCTGGG CTACCGCAAGCAGATGCGGTGGATGCCGACCTTCCCCTGGG < 41bp 0.587187876719986 0.856691642934554 NA NA prediction 0.539007532429137 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49102473 chr19:49102472 nonsynonymous SNV 0.003 4 20 hm7G_associated_SNPs_18251 0 0 0 0 1 SULT2B1 chr19:49102392 3'AG 49102392 Downstream 81bp 17202 chr3 179085271 179085271 1 + G T COAD 179085272 + 179085252 179085292 41 GCCTGCATTTCTTGGTGGAGGAGCTCAAAGTTGTAAATGCT GCCTGCATTTCTTGGTGGATGAGCTCAAAGTTGTAAATGCT < 41bp 0.572410364066467 0.841912936637358 NA NA prediction 0.539005145141783 Functional Gain - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179085272 chr3:179085271 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_18252 0 0 1 0 1 MFN1 chr3:179085227 3'AG 179085227 Downstream 45bp 17203 chr16 66413445 66413445 1 + G T LUAD 66413446 + 66413426 66413466 41 CTCACTTCCCCATCATGTAGGCAAGGTAAGGCTCAAGCCCC CTCACTTCCCCATCATGTATGCAAGGTAAGGCTCAAGCCCC < 41bp 0.590630695771827 0.860126889605349 NA NA prediction 0.538992387667045 Functional Gain - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66413446 chr16:66413445 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_18253 0 0 0 0 1 CDH5 chr16:66413450 5'GT 66413450 Upstream 6bp 17204 chr6 135507100 135507100 1 + G T COAD 135507101 + 135507081 135507121 41 TGTGACCATGACTATGATGGGCTGCTTCCCAAGTCTGGAAA TGTGACCATGACTATGATGTGCTGCTTCCCAAGTCTGGAAA < 41bp 0.489664456714973 0.769485495506732 NA NA prediction 0.538970991013464 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135507101 chr6:135507100 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18255 0 0 1 0 2 MYB chr6:135507041 3'AG 135507041 Downstream 60bp 17205 chr6 135507100 135507100 1 + G T COAD 135507101 + 135507081 135507121 41 TGTGACCATGACTATGATGGGCTGCTTCCCAAGTCTGGAAA TGTGACCATGACTATGATGTGCTGCTTCCCAAGTCTGGAAA < 41bp 0.489664456714973 0.769485495506732 NA NA prediction 0.538970991013464 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135507101 chr6:135507100 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18255 0 0 1 0 2 MYB chr6:135507158 5'GT 135507158 Upstream 59bp 17206 chr15 59373444 59373444 1 + G T UCEC 59373445 + 59373425 59373465 41 CCTCATGAAGTGATGCAGAGGATGGAAGTTCAAAGGAGGAG CCTCATGAAGTGATGCAGATGATGGAAGTTCAAAGGAGGAG < 41bp 0.574774593414416 0.84423246941212 NA NA prediction 0.538915751995408 Functional Gain - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59373445 chr15:59373444 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18257 0 0 0 0 1 RNF111 chr15:59373483 5'GT 59373483 Upstream 40bp 17207 chr3 178942541 178942541 1 + G T LUSC 178942542 + 178942522 178942562 41 AGGCCACTGTGGTTGAATTGGGAGAACCCAGACATCATGTC AGGCCACTGTGGTTGAATTTGGAGAACCCAGACATCATGTC < 41bp 0.582132553508986 0.851583438096636 NA NA prediction 0.5389017691753 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178942542 chr3:178942541 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18258 0 0 0 0 2 PIK3CA chr3:178942488 3'AG 178942488 Downstream 54bp 17208 chr3 178942541 178942541 1 + G T LUSC 178942542 + 178942522 178942562 41 AGGCCACTGTGGTTGAATTGGGAGAACCCAGACATCATGTC AGGCCACTGTGGTTGAATTTGGAGAACCCAGACATCATGTC < 41bp 0.582132553508986 0.851583438096636 NA NA prediction 0.5389017691753 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178942542 chr3:178942541 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18258 0 0 0 0 2 PIK3CA chr3:178942609 5'GT 178942609 Upstream 69bp 17209 chr17 35818669 35818669 1 + G T HNSC 35818670 + 35818650 35818690 41 TCTATCATTCCAGGTTAAAGGAGAGACAAAGACGAAAAAAG TCTATCATTCCAGGTTAAATGAGAGACAAAGACGAAAAAAG < 41bp 0.581543457814879 0.850983950230922 NA NA prediction 0.538880984832086 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35818670 chr17:35818669 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_18260 0 0 1 0 2 TADA2A chr17:35818626 3'AG 35818626 Downstream 44bp 17210 chr17 35818669 35818669 1 + G T HNSC 35818670 + 35818650 35818690 41 TCTATCATTCCAGGTTAAAGGAGAGACAAAGACGAAAAAAG TCTATCATTCCAGGTTAAATGAGAGACAAAGACGAAAAAAG < 41bp 0.581543457814879 0.850983950230922 NA NA prediction 0.538880984832086 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35818670 chr17:35818669 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_18260 0 0 1 0 2 TADA2A chr17:35818689 5'GT 35818689 Upstream 21bp 17211 chr5 134074481 134074481 1 + G T rs185566687 134074482 + 134074462 134074502 41 ACAGGCCCGGGAGCGGCGCGGGTAAGAGCCTCGATTTCCCC ACAGGCCCGGGAGCGGCGCTGGTAAGAGCCTCGATTTCCCC < 41bp 0.574646373709443 0.844071524649877 NA NA prediction 0.538850301880868 Functional Gain - CAMLG ENSG00000164615 CDS Human protein_coding chr5:134074482 chr5:134074481 synonymous SNV . 0 20 hm7G_associated_SNPs_18261 0 0 1 0 1 CAMLG chr5:134074482 5'GT 134074482 Upstream 2bp 17212 chr3 49212197 49212197 1 + G T LUSC 49212198 + 49212178 49212218 41 GCCGCCAGGGCAAGCTCCCGGTGACTGCTTTTGAAGCCTTT GCCGCCAGGGCAAGCTCCCTGTGACTGCTTTTGAAGCCTTT < 41bp 0.443771729569383 0.769408195820378 NA NA prediction 0.538816391640756 Functional Gain - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49212198 chr3:49212197 synonymous SNV . 0 20 hm7G_associated_SNPs_18262 0 0 1 0 1 KLHDC8B chr3:49212175 3'AG 49212175 Downstream 23bp 17213 chr1 154543720 154543720 1 + G T LUSC 154543721 + 154543701 154543741 41 TGCCGTGGTCTCCTATGATGGCAGCATCTTCTGGCTGCCGC TGCCGTGGTCTCCTATGATTGCAGCATCTTCTGGCTGCCGC < 41bp 0.452845037193574 0.769375827576323 NA NA prediction 0.538751655152645 Functional Gain - CHRNB2 ENSG00000160716 CDS Human protein_coding chr1:154543721 chr1:154543720 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_18266 0 0 0 0 1 CHRNB2 chr1:154543665 3'AG 154543665 Downstream 56bp 17214 chr11 117054797 117054797 1 + G T THCA 117054798 + 117054778 117054818 41 TTTTACTTCCAGATGAACCGGTCGATCAAGGGCACCGCCAG TTTTACTTCCAGATGAACCTGTCGATCAAGGGCACCGCCAG < 41bp 0.58815365854626 0.857500576101295 NA NA prediction 0.53869383511007 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117054798 chr11:117054797 synonymous SNV . 0 20 hm7G_associated_SNPs_18272 0 0 1 0 2 SIDT2 chr11:117054790 3'AG 117054790 Downstream 8bp 17215 chr11 117054797 117054797 1 + G T THCA 117054798 + 117054778 117054818 41 TTTTACTTCCAGATGAACCGGTCGATCAAGGGCACCGCCAG TTTTACTTCCAGATGAACCTGTCGATCAAGGGCACCGCCAG < 41bp 0.58815365854626 0.857500576101295 NA NA prediction 0.53869383511007 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117054798 chr11:117054797 synonymous SNV . 0 20 hm7G_associated_SNPs_18272 0 0 1 0 2 SIDT2 chr11:117054855 5'GT 117054855 Upstream 59bp 17216 chr1 109340798 109340798 1 + G T LIHC 109340799 + 109340779 109340819 41 AAACCGTTAAGAAAGGATCGGTCTGCAGAAGAAACTTTTCA AAACCGTTAAGAAAGGATCTGTCTGCAGAAGAAACTTTTCA < 41bp 0.54806374013481 0.817400447261039 NA NA prediction 0.538673414252457 Functional Gain - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109340799 chr1:109340798 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18273 0 0 0 1 2 STXBP3 chr1:109340767 3'AG 109340767 Downstream 32bp 17217 chr1 109340798 109340798 1 + G T LIHC 109340799 + 109340779 109340819 41 AAACCGTTAAGAAAGGATCGGTCTGCAGAAGAAACTTTTCA AAACCGTTAAGAAAGGATCTGTCTGCAGAAGAAACTTTTCA < 41bp 0.54806374013481 0.817400447261039 NA NA prediction 0.538673414252457 Functional Gain - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109340799 chr1:109340798 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18273 0 0 0 1 2 STXBP3 chr1:109340859 5'GT 109340859 Upstream 62bp 17218 chr2 68389420 68389420 1 + G T SKCM 68389421 + 68389401 68389441 41 CACTTGCCCTCATCAGGTTGGATGACCTCTTCCTAGAGTCT CACTTGCCCTCATCAGGTTTGATGACCTCTTCCTAGAGTCT < 41bp 0.580093111174415 0.849416979210716 NA NA prediction 0.538647736072603 Functional Gain - PNO1 ENSG00000115946 CDS Human protein_coding chr2:68389421 chr2:68389420 nonsynonymous SNV 0.931 4 20 hm7G_associated_SNPs_18275 0 0 1 0 2 PNO1 chr2:68389397 3'AG 68389397 Downstream 24bp 17219 chr2 68389420 68389420 1 + G T SKCM 68389421 + 68389401 68389441 41 CACTTGCCCTCATCAGGTTGGATGACCTCTTCCTAGAGTCT CACTTGCCCTCATCAGGTTTGATGACCTCTTCCTAGAGTCT < 41bp 0.580093111174415 0.849416979210716 NA NA prediction 0.538647736072603 Functional Gain - PNO1 ENSG00000115946 CDS Human protein_coding chr2:68389421 chr2:68389420 nonsynonymous SNV 0.931 4 20 hm7G_associated_SNPs_18275 0 0 1 0 2 PNO1 chr2:68389457 5'GT 68389457 Upstream 38bp 17220 chr4 156838595 156838595 1 + G T THYM 156838596 + 156838576 156838616 41 AGTTGCTGACTTCTCTTATGGACATAGATTCACTGATGACC AGTTGCTGACTTCTCTTATTGACATAGATTCACTGATGACC < 41bp 0.452099685745138 0.769323007958528 NA NA prediction 0.538646015917056 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156838596 chr4:156838595 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_18276 0 0 0 0 2 TDO2 chr4:156838547 3'AG 156838547 Downstream 49bp 17221 chr4 156838595 156838595 1 + G T THYM 156838596 + 156838576 156838616 41 AGTTGCTGACTTCTCTTATGGACATAGATTCACTGATGACC AGTTGCTGACTTCTCTTATTGACATAGATTCACTGATGACC < 41bp 0.452099685745138 0.769323007958528 NA NA prediction 0.538646015917056 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156838596 chr4:156838595 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_18276 0 0 0 0 2 TDO2 chr4:156838626 5'GT 156838626 Upstream 32bp 17222 chr11 60296849 60296849 1 + G T LUSC 60296850 + 60296830 60296870 41 GGTTATAGAAACTTGGGAGGGAAGTATCACGTATTTTACTG GGTTATAGAAACTTGGGAGTGAAGTATCACGTATTTTACTG < 41bp 0.469043821275507 0.769321818100994 NA NA prediction 0.538643636201988 Functional Gain - MS4A13 ENSG00000204979 CDS Human protein_coding chr11:60296850 chr11:60296849 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_18278 0 0 0 0 2 MS4A13 chr11:60296838 3'AG 60296838 Downstream 12bp 17223 chr11 60296849 60296849 1 + G T LUSC 60296850 + 60296830 60296870 41 GGTTATAGAAACTTGGGAGGGAAGTATCACGTATTTTACTG GGTTATAGAAACTTGGGAGTGAAGTATCACGTATTTTACTG < 41bp 0.469043821275507 0.769321818100994 NA NA prediction 0.538643636201988 Functional Gain - MS4A13 ENSG00000204979 CDS Human protein_coding chr11:60296850 chr11:60296849 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_18278 0 0 0 0 2 MS4A13 chr11:60296933 5'GT 60296933 Upstream 85bp 17224 chr19 41509980 41509980 1 + G T PAAD 41509981 + 41509961 41510001 41 TCATGCTGTGTGGAGTAGAGGCCATACGGGAGGCCCTTGTG TCATGCTGTGTGGAGTAGATGCCATACGGGAGGCCCTTGTG < 41bp 0.590461768666578 0.859772617516237 NA NA prediction 0.538621697699318 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41509981 chr19:41509980 nonsynonymous SNV 0.519 0 20 hm7G_associated_SNPs_18279 0 0 0 0 2 CYP2B6 chr19:41509906 3'AG 41509906 Downstream 75bp 17225 chr19 41509980 41509980 1 + G T PAAD 41509981 + 41509961 41510001 41 TCATGCTGTGTGGAGTAGAGGCCATACGGGAGGCCCTTGTG TCATGCTGTGTGGAGTAGATGCCATACGGGAGGCCCTTGTG < 41bp 0.590461768666578 0.859772617516237 NA NA prediction 0.538621697699318 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41509981 chr19:41509980 nonsynonymous SNV 0.519 0 20 hm7G_associated_SNPs_18279 0 0 0 0 2 CYP2B6 chr19:41510068 5'GT 41510068 Upstream 89bp 17226 chr20 33501936 33501936 1 + G T UCEC 33501937 + 33501917 33501957 41 AAAAGCTTGTGAACCTGAAGGAGCTGGCTGACGAGGCCCTG AAAAGCTTGTGAACCTGAATGAGCTGGCTGACGAGGCCCTG < 41bp 0.597617556332994 0.866925322977331 NA NA prediction 0.538615533288675 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33501937 chr20:33501936 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18280 0 0 1 0 2 ACSS2 chr20:33501899 3'AG 33501899 Downstream 38bp 17227 chr20 33501936 33501936 1 + G T UCEC 33501937 + 33501917 33501957 41 AAAAGCTTGTGAACCTGAAGGAGCTGGCTGACGAGGCCCTG AAAAGCTTGTGAACCTGAATGAGCTGGCTGACGAGGCCCTG < 41bp 0.597617556332994 0.866925322977331 NA NA prediction 0.538615533288675 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33501937 chr20:33501936 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18280 0 0 1 0 2 ACSS2 chr20:33501974 5'GT 33501974 Upstream 39bp 17228 chr2 220134997 220134997 1 + G T LUAD 220134998 + 220134978 220135018 41 CTGCCAATAACTATGCCTGGGGCCACTACACCATTGGGAAG CTGCCAATAACTATGCCTGTGGCCACTACACCATTGGGAAG < 41bp 0.463853514542145 0.769298873364754 NA NA prediction 0.538597746729507 Functional Gain - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220134998 chr2:220134997 . . 0 20 hm7G_associated_SNPs_18281 0 0 0 1 3 TUBA4B chr2:220134924 3'AG 220134924 Downstream 74bp 17229 chr2 220134997 220134997 1 + G T LUAD 220134998 + 220134978 220135018 41 CTGCCAATAACTATGCCTGGGGCCACTACACCATTGGGAAG CTGCCAATAACTATGCCTGTGGCCACTACACCATTGGGAAG < 41bp 0.463853514542145 0.769298873364754 NA NA prediction 0.538597746729507 Functional Gain - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220134998 chr2:220134997 . . 0 20 hm7G_associated_SNPs_18281 0 0 0 1 3 TUBA4B chr2:220134956 3'AG 220134956 Downstream 42bp 17230 chr2 220134997 220134997 1 + G T LUAD 220134998 + 220134978 220135018 41 CTGCCAATAACTATGCCTGGGGCCACTACACCATTGGGAAG CTGCCAATAACTATGCCTGTGGCCACTACACCATTGGGAAG < 41bp 0.463853514542145 0.769298873364754 NA NA prediction 0.538597746729507 Functional Gain - TUBA4B ENSG00000243910 ncRNA_exonic Human protein_coding chr2:220134998 chr2:220134997 . . 0 20 hm7G_associated_SNPs_18281 0 0 0 1 3 TUBA4B chr2:220135057 5'GT 220135057 Upstream 61bp 17231 chr14 90450897 90450897 1 + G T SKCM 90450898 + 90450878 90450918 41 ATACCCACGAATTGCTGATGGAACCCACAAATCTGGAGAGT ATACCCACGAATTGCTGATTGAACCCACAAATCTGGAGAGT < 41bp 0.447601246383672 0.769270712976636 NA NA prediction 0.538541425953272 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90450898 chr14:90450897 stopgain 0.049 0 20 hm7G_associated_SNPs_18283 0 0 1 0 1 TDP1 chr14:90450860 3'AG 90450860 Downstream 38bp 17232 chr20 34832682 34832682 1 + G T LUAD 34832683 + 34832663 34832703 41 TACGAGGCATTTGAGCATTGGAAGCGGCTCCTGAACCTCCT TACGAGGCATTTGAGCATTTGAAGCGGCTCCTGAACCTCCT < 41bp 0.58545629114475 0.854708314897819 NA NA prediction 0.538504047506138 Functional Gain - AAR2 ENSG00000131043 CDS Human protein_coding chr20:34832683 chr20:34832682 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18285 0 0 1 0 1 AAR2 chr20:34832619 3'AG 34832619 Downstream 64bp 17233 chrX 11778988 11778988 1 + G T UCEC 11778989 + 11778969 11779009 41 AGAAAGAAGAAGCGCTGCAGGTTGCCTGGTGTGGACTCTGT AGAAAGAAGAAGCGCTGCATGTTGCCTGGTGTGGACTCTGT < 41bp 0.582230259633548 0.851474736103021 NA NA prediction 0.538488952938945 Functional Gain - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11778989 chrX:11778988 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18286 0 0 1 0 2 MSL3 chrX:11778956 3'AG 11778956 Downstream 33bp 17234 chrX 11778988 11778988 1 + G T UCEC 11778989 + 11778969 11779009 41 AGAAAGAAGAAGCGCTGCAGGTTGCCTGGTGTGGACTCTGT AGAAAGAAGAAGCGCTGCATGTTGCCTGGTGTGGACTCTGT < 41bp 0.582230259633548 0.851474736103021 NA NA prediction 0.538488952938945 Functional Gain - MSL3 ENSG00000005302 CDS Human protein_coding chrX:11778989 chrX:11778988 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18286 0 0 1 0 2 MSL3 chrX:11779056 5'GT 11779056 Upstream 69bp 17235 chr9 12708116 12708116 1 + G T LUAD 12708117 + 12708097 12708137 41 TACTGCTCCAGACAACCTGGGATACACTTATGAAATTCAAT TACTGCTCCAGACAACCTGTGATACACTTATGAAATTCAAT < 41bp 0.57374887789818 0.842988856413788 NA NA prediction 0.538479957031215 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12708117 chr9:12708116 stopgain 0.998 1 20 hm7G_associated_SNPs_18287 0 0 0 0 1 TYRP1 chr9:12708143 5'GT 12708143 Upstream 28bp 17236 chr7 95726882 95726882 1 + G T LUAD 95726883 + 95726863 95726903 41 AGCTGATAGCGAGGAGGAAGGCACTGTTGAGTTATCTGCCT AGCTGATAGCGAGGAGGAATGCACTGTTGAGTTATCTGCCT < 41bp 0.461663511572136 0.76923965130811 NA NA prediction 0.538479302616219 Functional Gain - DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95726883 chr7:95726882 nonsynonymous SNV 0.903 3 20 hm7G_associated_SNPs_18288 0 0 0 0 1 DYNC1I1 chr7:95726795 3'AG 95726795 Downstream 88bp 17237 chr8 144463994 144463994 1 + G T COAD 144463995 + 144463975 144464015 41 AGGCGGCTGGCCTGAAGGAGGGCGACTACATTGTGTCAGTG AGGCGGCTGGCCTGAAGGATGGCGACTACATTGTGTCAGTG < 41bp 0.436908263712681 0.769239571907554 NA NA prediction 0.538479143815108 Functional Gain - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144463995 chr8:144463994 nonsynonymous SNV 0.864 4 20 hm7G_associated_SNPs_18289 0 0 1 0 1 RHPN1 chr8:144463977 3'AG 144463977 Downstream 18bp 17238 chr2 69002461 69002461 1 + G T PAAD 69002462 + 69002442 69002482 41 GGCTGGCTGAAGAAGCAGAGGTCCATCGTGAAGAACTGGCA GGCTGGCTGAAGAAGCAGATGTCCATCGTGAAGAACTGGCA < 41bp 0.432541274017975 0.76923046938452 NA NA prediction 0.53846093876904 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002462 chr2:69002461 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18290 0 0 0 0 2 ARHGAP25 chr2:69002488 5'GT 69002488 Upstream 28bp 17239 chr2 69002461 69002461 1 + G T PAAD 69002462 + 69002442 69002482 41 GGCTGGCTGAAGAAGCAGAGGTCCATCGTGAAGAACTGGCA GGCTGGCTGAAGAAGCAGATGTCCATCGTGAAGAACTGGCA < 41bp 0.432541274017975 0.76923046938452 NA NA prediction 0.53846093876904 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002462 chr2:69002461 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18290 0 0 0 0 2 ARHGAP25 chr2:69002552 5'GT 69002552 Upstream 92bp 17240 chr16 1392721 1392721 1 + G T UCEC 1392722 + 1392702 1392742 41 GTGGGCTCTGCGTTGCAGAGGGATACGGCCATGAGCCAGCG GTGGGCTCTGCGTTGCAGATGGATACGGCCATGAGCCAGCG < 41bp 0.433305616183082 0.769226898764025 NA NA prediction 0.538453797528051 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392722 chr16:1392721 nonsynonymous SNV 0.090 3 20 hm7G_associated_SNPs_18291 0 0 0 0 2 BAIAP3 chr16:1392720 3'AG 1392720 Downstream 2bp 17241 chr16 1392721 1392721 1 + G T UCEC 1392722 + 1392702 1392742 41 GTGGGCTCTGCGTTGCAGAGGGATACGGCCATGAGCCAGCG GTGGGCTCTGCGTTGCAGATGGATACGGCCATGAGCCAGCG < 41bp 0.433305616183082 0.769226898764025 NA NA prediction 0.538453797528051 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392722 chr16:1392721 nonsynonymous SNV 0.090 3 20 hm7G_associated_SNPs_18291 0 0 0 0 2 BAIAP3 chr16:1392815 5'GT 1392815 Upstream 95bp 17242 chr16 20482947 20482947 1 + G T LUSC 20482948 + 20482928 20482968 41 TGCTCACTTATGGAACCTTGGGCATTAGGAGCATGCACATT TGCTCACTTATGGAACCTTTGGCATTAGGAGCATGCACATT < 41bp 0.591258804167135 0.860485581324361 NA NA prediction 0.538453554314451 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20482948 chr16:20482947 nonsynonymous SNV 0.017 4 20 hm7G_associated_SNPs_18292 0 0 0 1 2 ACSM2A chr16:20482858 3'AG 20482858 Downstream 90bp 17243 chr16 20482947 20482947 1 + G T LUSC 20482948 + 20482928 20482968 41 TGCTCACTTATGGAACCTTGGGCATTAGGAGCATGCACATT TGCTCACTTATGGAACCTTTGGCATTAGGAGCATGCACATT < 41bp 0.591258804167135 0.860485581324361 NA NA prediction 0.538453554314451 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20482948 chr16:20482947 nonsynonymous SNV 0.017 4 20 hm7G_associated_SNPs_18292 0 0 0 1 2 ACSM2A chr16:20483011 5'GT 20483011 Upstream 65bp 17244 chrX 37985883 37985883 1 + G T LUAD 37985884 + 37985864 37985904 41 GATTGGATGGACTCTCAGGGGGAAGAGCAGCGCCTTTGGCA GATTGGATGGACTCTCAGGTGGAAGAGCAGCGCCTTTGGCA < 41bp 0.570410736445767 0.839629981534767 NA NA prediction 0.538438490177998 Functional Gain - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37985884 chrX:37985883 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18295 0 0 0 0 1 SYTL5 chrX:37985841 3'AG 37985841 Downstream 43bp 17245 chr14 105208238 105208238 1 + G T COAD 105208239 + 105208219 105208259 41 CGTGGGCGGTGTGTGCACGGGCCTGGGCATCCCCCCGCAGA CGTGGGCGGTGTGTGCACGTGCCTGGGCATCCCCCCGCAGA < 41bp 0.60108089641895 0.870289120618388 NA NA prediction 0.538416448398875 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105208239 chr14:105208238 nonsynonymous SNV 0.774 4 20 hm7G_associated_SNPs_18296 0 0 1 0 1 ADSSL1 chr14:105208185 3'AG 105208185 Downstream 54bp 17246 chr5 14601329 14601329 1 + G T HNSC 14601330 + 14601310 14601350 41 TTTATCTTTCAGGTGGATTGGATATCTGCAGAGAAAATTCA TTTATCTTTCAGGTGGATTTGATATCTGCAGAGAAAATTCA < 41bp 0.544226086169373 0.813406795690657 NA NA prediction 0.538361419042567 Functional Gain - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14601330 chr5:14601329 stopgain 0.998 1 20 hm7G_associated_SNPs_18297 0 0 0 0 2 FAM105A chr5:14601322 3'AG 14601322 Downstream 8bp 17247 chr5 14601329 14601329 1 + G T HNSC 14601330 + 14601310 14601350 41 TTTATCTTTCAGGTGGATTGGATATCTGCAGAGAAAATTCA TTTATCTTTCAGGTGGATTTGATATCTGCAGAGAAAATTCA < 41bp 0.544226086169373 0.813406795690657 NA NA prediction 0.538361419042567 Functional Gain - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14601330 chr5:14601329 stopgain 0.998 1 20 hm7G_associated_SNPs_18297 0 0 0 0 2 FAM105A chr5:14601353 5'GT 14601353 Upstream 25bp 17248 chr1 154296077 154296077 1 + G T ESCA 154296078 + 154296058 154296098 41 CTCCAAGGTTCTGGGCACTGGGATGCTGATTGTGGGGCTCT CTCCAAGGTTCTGGGCACTTGGATGCTGATTGTGGGGCTCT < 41bp 0.584473347346361 0.853649181739213 NA NA prediction 0.538351668785702 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296078 chr1:154296077 nonsynonymous SNV 0.673 1 20 hm7G_associated_SNPs_18298 0 0 0 0 1 AQP10 chr1:154296065 3'AG 154296065 Downstream 13bp 17249 chr4 71068479 71068479 1 + G T LUSC 71068480 + 71068460 71068500 41 TCATTCTCTGTAGTCAACAGGAGAAGAGATACCATATTTAC TCATTCTCTGTAGTCAACATGAGAAGAGATACCATATTTAC < 41bp 0.484845557208949 0.769167175850214 NA NA prediction 0.538334351700427 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71068480 chr4:71068479 stopgain 0.005 0 20 hm7G_associated_SNPs_18299 0 0 0 0 1 ODAM chr4:71068473 3'AG 71068473 Downstream 7bp 17250 chr21 30407158 30407158 1 + G T LUAD 30407159 + 30407139 30407179 41 ATGATTATGATTTTTTTAGGGCTGTGGCAGAAATTCTCAGG ATGATTATGATTTTTTTAGTGCTGTGGCAGAAATTCTCAGG < 41bp 0.572772013612787 0.841911256357176 NA NA prediction 0.538278485488778 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30407159 chr21:30407158 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_18300 0 0 1 0 1 USP16 chr21:30407158 3'AG 30407158 Downstream 1bp 17251 chr2 159660805 159660805 1 + G T UCEC 159660806 + 159660786 159660826 41 GTTTGTAGTAAAAGCTGGAGGAATGAGAATTTCCAAAAAAC GTTTGTAGTAAAAGCTGGATGAATGAGAATTTCCAAAAAAC < 41bp 0.464502441076837 0.769106949933221 NA NA prediction 0.538213899866442 Functional Gain - DAPL1 ENSG00000163331 CDS Human protein_coding chr2:159660806 chr2:159660805 stopgain 0.999 1 20 hm7G_associated_SNPs_18302 0 0 0 0 2 DAPL1 chr2:159660794 3'AG 159660794 Downstream 12bp 17252 chr2 159660805 159660805 1 + G T UCEC 159660806 + 159660786 159660826 41 GTTTGTAGTAAAAGCTGGAGGAATGAGAATTTCCAAAAAAC GTTTGTAGTAAAAGCTGGATGAATGAGAATTTCCAAAAAAC < 41bp 0.464502441076837 0.769106949933221 NA NA prediction 0.538213899866442 Functional Gain - DAPL1 ENSG00000163331 CDS Human protein_coding chr2:159660806 chr2:159660805 stopgain 0.999 1 20 hm7G_associated_SNPs_18302 0 0 0 0 2 DAPL1 chr2:159660881 5'GT 159660881 Upstream 77bp 17253 chr1 75626524 75626524 1 + G T LUAD 75626525 + 75626505 75626545 41 TCATTCACCAACAACTCTTGGACTCCAGCCCTTGTTACCCC TCATTCACCAACAACTCTTTGACTCCAGCCCTTGTTACCCC < 41bp 0.554372755315091 0.823475574856527 NA NA prediction 0.538205639082872 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75626525 chr1:75626524 stopgain 1.000 0 20 hm7G_associated_SNPs_18304 0 0 0 0 1 LHX8 chr1:75626504 3'AG 75626504 Downstream 21bp 17254 chr12 109614029 109614029 1 + G T UCEC 109614030 + 109614010 109614050 41 GAGGGAAGGGAATCCGGAAGGCTGAGAGTGCGGAGGACTTC GAGGGAAGGGAATCCGGAATGCTGAGAGTGCGGAGGACTTC < 41bp 0.594139974855393 0.863234674216825 NA NA prediction 0.538189398722864 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109614030 chr12:109614029 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_18306 0 0 1 0 2 ACACB chr12:109613958 3'AG 109613958 Downstream 72bp 17255 chr12 109614029 109614029 1 + G T UCEC 109614030 + 109614010 109614050 41 GAGGGAAGGGAATCCGGAAGGCTGAGAGTGCGGAGGACTTC GAGGGAAGGGAATCCGGAATGCTGAGAGTGCGGAGGACTTC < 41bp 0.594139974855393 0.863234674216825 NA NA prediction 0.538189398722864 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109614030 chr12:109614029 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_18306 0 0 1 0 2 ACACB chr12:109614068 5'GT 109614068 Upstream 40bp 17256 chr6 146480580 146480580 1 + G T BRCA 146480581 + 146480561 146480601 41 AAAATCTACAGCAACGCTGGGGAGAAGAGCTTTGACCGACT AAAATCTACAGCAACGCTGTGGAGAAGAGCTTTGACCGACT < 41bp 0.453262768081376 0.76908796116959 NA NA prediction 0.538175922339181 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146480581 chr6:146480580 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18307 0 0 0 0 1 GRM1 chr6:146480484 3'AG 146480484 Downstream 97bp 17257 chr12 52699551 52699551 1 + G T UCEC 52699552 + 52699532 52699572 41 TCCAGAGGCTGACGGCTGAGGTGGAGAATGCCAAGTGCCAG TCCAGAGGCTGACGGCTGATGTGGAGAATGCCAAGTGCCAG < 41bp 0.587526208301342 0.856610261123307 NA NA prediction 0.538168105643931 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52699552 chr12:52699551 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_18308 0 0 0 0 1 KRT86 chr12:52699572 5'GT 52699572 Upstream 22bp 17258 chrX 128914109 128914109 1 + G T OV 128914110 + 128914090 128914130 41 CCTCCAATGCCAGTGAGAAGGAGCCCACTCAGAAGAAAAAG CCTCCAATGCCAGTGAGAATGAGCCCACTCAGAAGAAAAAG < 41bp 0.58309321022069 0.852168272791197 NA NA prediction 0.538150125141015 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128914110 chrX:128914109 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_18309 0 0 0 0 1 SASH3 chrX:128914130 5'GT 128914130 Upstream 22bp 17259 chr1 170695468 170695468 1 + G T LUAD 170695469 + 170695449 170695489 41 CAGGAGACGTGACTGCTGTGGAGCAGCCCATCGTACCTCGT CAGGAGACGTGACTGCTGTTGAGCAGCCCATCGTACCTCGT < 41bp 0.448494394782267 0.769053761403405 NA NA prediction 0.538107522806809 Functional Gain - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170695469 chr1:170695468 synonymous SNV . 0 20 hm7G_associated_SNPs_18312 0 0 0 0 1 PRRX1 chr1:170695542 5'GT 170695542 Upstream 75bp 17260 chr8 95655613 95655613 1 + G T CESC 95655614 + 95655594 95655634 41 GATGGGCAGCTTCATGTCAGGCAAATCCTGCATCCTGAGGC GATGGGCAGCTTCATGTCATGCAAATCCTGCATCCTGAGGC < 41bp 0.440710013945873 0.769028428623609 NA NA prediction 0.538056857247219 Functional Gain - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95655614 chr8:95655613 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_18315 0 0 1 0 2 ESRP1 chr8:95655531 3'AG 95655531 Downstream 83bp 17261 chr8 95655613 95655613 1 + G T CESC 95655614 + 95655594 95655634 41 GATGGGCAGCTTCATGTCAGGCAAATCCTGCATCCTGAGGC GATGGGCAGCTTCATGTCATGCAAATCCTGCATCCTGAGGC < 41bp 0.440710013945873 0.769028428623609 NA NA prediction 0.538056857247219 Functional Gain - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95655614 chr8:95655613 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_18315 0 0 1 0 2 ESRP1 chr8:95655644 5'GT 95655644 Upstream 32bp 17262 chr2 241808604 241808604 1 + G T SARC 241808605 + 241808585 241808625 41 AGATCATGGACGAGATCAAGGAAGGCATCCAGTACGTGTTC AGATCATGGACGAGATCAATGAAGGCATCCAGTACGTGTTC < 41bp 0.443422153210747 0.769024194504101 NA NA prediction 0.538048389008202 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808605 chr2:241808604 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_18316 0 0 0 0 1 AGXT chr2:241808587 3'AG 241808587 Downstream 18bp 17263 chr9 27192575 27192575 1 + G T UCEC 27192576 + 27192556 27192596 41 TCCGTCGTGGAGAGGGTGGGGAAGGGCATCCTGGACCTGTG TCCGTCGTGGAGAGGGTGGTGAAGGGCATCCTGGACCTGTG < 41bp 0.591105809243773 0.860116265376622 NA NA prediction 0.538020912265698 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27192576 chr9:27192575 synonymous SNV . 0 20 hm7G_associated_SNPs_18317 0 0 0 0 2 TEK chr9:27192487 3'AG 27192487 Downstream 89bp 17264 chr9 27192575 27192575 1 + G T UCEC 27192576 + 27192556 27192596 41 TCCGTCGTGGAGAGGGTGGGGAAGGGCATCCTGGACCTGTG TCCGTCGTGGAGAGGGTGGTGAAGGGCATCCTGGACCTGTG < 41bp 0.591105809243773 0.860116265376622 NA NA prediction 0.538020912265698 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27192576 chr9:27192575 synonymous SNV . 0 20 hm7G_associated_SNPs_18317 0 0 0 0 2 TEK chr9:27192621 5'GT 27192621 Upstream 47bp 17265 chr17 4648204 4648204 1 + G T GBM 4648205 + 4648185 4648225 41 CTCAAGGATACGTGGCTGAGGTCTCTGCCCCGGTTACAGGT CTCAAGGATACGTGGCTGATGTCTCTGCCCCGGTTACAGGT < 41bp 0.443249001739948 0.768957112791246 NA NA prediction 0.537914225582492 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648205 chr17:4648204 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_18322 0 0 0 0 3 ZMYND15 chr17:4648141 3'AG 4648141 Downstream 64bp 17266 chr17 4648204 4648204 1 + G T GBM 4648205 + 4648185 4648225 41 CTCAAGGATACGTGGCTGAGGTCTCTGCCCCGGTTACAGGT CTCAAGGATACGTGGCTGATGTCTCTGCCCCGGTTACAGGT < 41bp 0.443249001739948 0.768957112791246 NA NA prediction 0.537914225582492 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648205 chr17:4648204 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_18322 0 0 0 0 3 ZMYND15 chr17:4648165 3'AG 4648165 Downstream 40bp 17267 chr17 4648204 4648204 1 + G T GBM 4648205 + 4648185 4648225 41 CTCAAGGATACGTGGCTGAGGTCTCTGCCCCGGTTACAGGT CTCAAGGATACGTGGCTGATGTCTCTGCCCCGGTTACAGGT < 41bp 0.443249001739948 0.768957112791246 NA NA prediction 0.537914225582492 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648205 chr17:4648204 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_18322 0 0 0 0 3 ZMYND15 chr17:4648223 5'GT 4648223 Upstream 20bp 17268 chrX 100075408 100075408 1 + G T LUSC 100075409 + 100075389 100075429 41 GCCGACTCAACAGAGCTATGGCGGGTTTGACTGTGAGAGAC GCCGACTCAACAGAGCTATTGCGGGTTTGACTGTGAGAGAC < 41bp 0.588525385445297 0.857455207469383 NA NA prediction 0.537859644048172 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100075409 chrX:100075408 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_18323 0 0 1 0 1 CSTF2 chrX:100075463 5'GT 100075463 Upstream 56bp 17269 chr15 68434639 68434639 1 + G T LUSC 68434640 + 68434620 68434660 41 TCTTCTAGGGATATTTCTGGGACCAAATGTGACTTCACAGT TCTTCTAGGGATATTTCTGTGACCAAATGTGACTTCACAGT < 41bp 0.452889709428913 0.768928416601898 NA NA prediction 0.537856833203796 Functional Gain - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68434640 chr15:68434639 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18324 0 0 1 0 2 PIAS1 chr15:68434628 3'AG 68434628 Downstream 12bp 17270 chr15 68434639 68434639 1 + G T LUSC 68434640 + 68434620 68434660 41 TCTTCTAGGGATATTTCTGGGACCAAATGTGACTTCACAGT TCTTCTAGGGATATTTCTGTGACCAAATGTGACTTCACAGT < 41bp 0.452889709428913 0.768928416601898 NA NA prediction 0.537856833203796 Functional Gain - PIAS1 ENSG00000033800 CDS Human protein_coding chr15:68434640 chr15:68434639 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18324 0 0 1 0 2 PIAS1 chr15:68434675 5'GT 68434675 Upstream 37bp 17271 chr11 120983866 120983866 1 + G T LUAD 120983867 + 120983847 120983887 41 GAAATCAACTGGACCACGGGGACGGCGAGTGGCGGCGACCC GAAATCAACTGGACCACGGTGACGGCGAGTGGCGGCGACCC < 41bp 0.59912082799216 0.86804528912614 NA NA prediction 0.537848922267961 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120983867 chr11:120983866 nonsynonymous SNV 0.051 4 20 hm7G_associated_SNPs_18326 0 0 0 0 2 TECTA chr11:120983781 3'AG 120983781 Downstream 86bp 17272 chr11 120983866 120983866 1 + G T LUAD 120983867 + 120983847 120983887 41 GAAATCAACTGGACCACGGGGACGGCGAGTGGCGGCGACCC GAAATCAACTGGACCACGGTGACGGCGAGTGGCGGCGACCC < 41bp 0.59912082799216 0.86804528912614 NA NA prediction 0.537848922267961 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120983867 chr11:120983866 nonsynonymous SNV 0.051 4 20 hm7G_associated_SNPs_18326 0 0 0 0 2 TECTA chr11:120983918 5'GT 120983918 Upstream 53bp 17273 chr2 28627202 28627202 1 + G T UCEC 28627203 + 28627183 28627223 41 GACCATTGGCACCACCGTGGGCCGCAGGAGGAGAGATGAGC GACCATTGGCACCACCGTGTGCCGCAGGAGGAGAGATGAGC < 41bp 0.596700912357485 0.865619877313782 NA NA prediction 0.537837929912594 Functional Gain - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28627203 chr2:28627202 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18327 0 0 1 0 1 FOSL2 chr2:28627225 5'GT 28627225 Upstream 24bp 17274 chr7 150773121 150773121 1 - C A UCEC 150773120 - 150773100 150773140 41 AGCTGCAGGGCCGTGAACAGGTGCATACGGAGGGTCCGGAC AGCTGCAGGGCCGTGAACATGTGCATACGGAGGGTCCGGAC < 41bp 0.459867176346306 0.768906445150711 NA NA prediction 0.537812890301422 Functional Gain - SLC4A2 ENSG00000164889 CDS Human antisense chr7:150773120 chr7:150773121 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18328 0 0 0 0 1 SLC4A2 chr7:150773083 5'GT 150773083 Upstream 39bp 17275 chr16 68845724 68845724 1 + G T UCEC 68845725 + 68845705 68845745 41 CACCATTAACAGGAACACAGGAGTCATCAGTGTGGTCACCA CACCATTAACAGGAACACATGAGTCATCAGTGTGGTCACCA < 41bp 0.43968979222294 0.768890994195396 NA NA prediction 0.537781988390791 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68845725 chr16:68845724 stopgain 0.820 1 20 hm7G_associated_SNPs_18330 0 0 0 0 1 CDH1 chr16:68845762 5'GT 68845762 Upstream 39bp 17276 chr12 54936367 54936367 1 + G T COAD 54936368 + 54936348 54936388 41 ATCTCTTTCAGGTGGTGGAGGAGTCATCCTTCCTGACCCTG ATCTCTTTCAGGTGGTGGATGAGTCATCCTTCCTGACCCTG < 41bp 0.459598549354844 0.768890125897415 NA NA prediction 0.53778025179483 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54936368 chr12:54936367 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_18331 0 0 1 0 1 NCKAP1L chr12:54936359 3'AG 54936359 Downstream 9bp 17277 chr8 56882308 56882308 1 + G T GBM 56882309 + 56882289 56882329 41 TTTCCTGAAGAGCGATGAAGGTGGCAAAGTGCTGCTTCCAA TTTCCTGAAGAGCGATGAATGTGGCAAAGTGCTGCTTCCAA < 41bp 0.454288894832594 0.768881661889272 NA NA prediction 0.537763323778544 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56882309 chr8:56882308 nonsynonymous SNV 0.766 4 20 hm7G_associated_SNPs_18332 0 0 0 0 2 LYN chr8:56882276 3'AG 56882276 Downstream 33bp 17278 chr8 56882308 56882308 1 + G T GBM 56882309 + 56882289 56882329 41 TTTCCTGAAGAGCGATGAAGGTGGCAAAGTGCTGCTTCCAA TTTCCTGAAGAGCGATGAATGTGGCAAAGTGCTGCTTCCAA < 41bp 0.454288894832594 0.768881661889272 NA NA prediction 0.537763323778544 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56882309 chr8:56882308 nonsynonymous SNV 0.766 4 20 hm7G_associated_SNPs_18332 0 0 0 0 2 LYN chr8:56882352 5'GT 56882352 Upstream 45bp 17279 chr11 64060600 64060600 1 + G T UCEC 64060601 + 64060581 64060621 41 CACGAGCAGCAGGCCCAGAGGGAGCTGGGGGAGGTCCGAGA CACGAGCAGCAGGCCCAGATGGAGCTGGGGGAGGTCCGAGA < 41bp 0.590285621870958 0.859121015056637 NA NA prediction 0.537670786371359 Functional Gain - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64060601 chr11:64060600 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_18334 0 0 0 0 1 KCNK4 chr11:64060679 5'GT 64060679 Upstream 80bp 17280 chr7 73523348 73523348 1 + G T SARC 73523349 + 73523329 73523369 41 TCAAGGGCGGCACGCTCCGGGGCATCATCAAGAGCATGGTG TCAAGGGCGGCACGCTCCGTGGCATCATCAAGAGCATGGTG < 41bp 0.436812180184602 0.768830070568258 NA NA prediction 0.537660141136516 Functional Gain - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73523349 chr7:73523348 synonymous SNV . 0 20 hm7G_associated_SNPs_18335 0 0 0 0 1 LIMK1 chr7:73523366 5'GT 73523366 Upstream 19bp 17281 chr19 727622 727622 1 + G T LUAD 727623 + 727603 727643 41 CCGTCCTCGGCCTCAGAGGGGGATGAGGACCTGAGGAGGCA CCGTCCTCGGCCTCAGAGGTGGATGAGGACCTGAGGAGGCA < 41bp 0.598728990565761 0.867540481682458 NA NA prediction 0.537622982233393 Functional Gain - PALM ENSG00000099864 CDS Human protein_coding chr19:727623 chr19:727622 nonsynonymous SNV 0.869 2 20 hm7G_associated_SNPs_18337 0 0 1 0 2 PALM chr19:727564 3'AG 727564 Downstream 59bp 17282 chr19 727622 727622 1 + G T LUAD 727623 + 727603 727643 41 CCGTCCTCGGCCTCAGAGGGGGATGAGGACCTGAGGAGGCA CCGTCCTCGGCCTCAGAGGTGGATGAGGACCTGAGGAGGCA < 41bp 0.598728990565761 0.867540481682458 NA NA prediction 0.537622982233393 Functional Gain - PALM ENSG00000099864 CDS Human protein_coding chr19:727623 chr19:727622 nonsynonymous SNV 0.869 2 20 hm7G_associated_SNPs_18337 0 0 1 0 2 PALM chr19:727694 5'GT 727694 Upstream 73bp 17283 chrX 38260660 38260660 1 + G T BLCA 38260661 + 38260641 38260681 41 ACCATCCTATCCAGATCCTGGCTGATTACCTCACGCTCCAG ACCATCCTATCCAGATCCTTGCTGATTACCTCACGCTCCAG < 41bp 0.590368044291166 0.859172152561049 NA NA prediction 0.537608216539766 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38260661 chrX:38260660 synonymous SNV . 0 20 hm7G_associated_SNPs_18339 0 0 0 0 1 OTC chrX:38260681 5'GT 38260681 Upstream 22bp 17284 chr5 5057886 5057886 1 + G T UCEC 5057887 + 5057867 5057907 41 GGAAGGAAAGGGAAAGGAAGGAAAAGAAAGGAAAGTGAACT GGAAGGAAAGGGAAAGGAATGAAAAGAAAGGAAAGTGAACT < 41bp 0.505191863580419 0.773965589778546 NA NA prediction 0.537547452396254 Functional Gain - LINC01020 ENSG00000215231 ncRNA_exonic Human lincRNA chr5:5057887 chr5:5057886 . . 0 20 hm7G_associated_SNPs_18340 0 0 0 0 1 LINC01020 chr5:5057941 5'GT 5057941 Upstream 56bp 17285 chr6 28500162 28500162 1 + G T LUAD 28500163 + 28500143 28500183 41 TGAGAAAGGGGATGTGAATGGTGAAAAAGAACAGAAAGTCT TGAGAAAGGGGATGTGAATTGTGAAAAAGAACAGAAAGTCT < 41bp 0.552790361012261 0.821554419463671 NA NA prediction 0.53752811690282 Functional Gain - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28500163 chr6:28500162 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_18341 0 0 0 1 2 GPX5 chr6:28500098 3'AG 28500098 Downstream 65bp 17286 chr6 28500162 28500162 1 + G T LUAD 28500163 + 28500143 28500183 41 TGAGAAAGGGGATGTGAATGGTGAAAAAGAACAGAAAGTCT TGAGAAAGGGGATGTGAATTGTGAAAAAGAACAGAAAGTCT < 41bp 0.552790361012261 0.821554419463671 NA NA prediction 0.53752811690282 Functional Gain - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28500163 chr6:28500162 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_18341 0 0 0 1 2 GPX5 chr6:28500197 5'GT 28500197 Upstream 36bp 17287 chr15 75042167 75042167 1 + G T SKCM 75042168 + 75042148 75042188 41 GGTATTCTGGGTGCTCAAGGGTTTGAGGCCTCGGGTCCCCA GGTATTCTGGGTGCTCAAGTGTTTGAGGCCTCGGGTCCCCA < 41bp 0.583297892093753 0.852047010385276 NA NA prediction 0.537498236583047 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75042168 chr15:75042167 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_18343 0 0 0 0 1 CYP1A2 chr15:75042071 3'AG 75042071 Downstream 97bp 17288 chr2 219494284 219494284 1 + G T UCEC 219494285 + 219494265 219494305 41 GCGTGGAGGTGGATGTATGGGATGGACCTAGCGGGGAACCT GCGTGGAGGTGGATGTATGTGATGGACCTAGCGGGGAACCT < 41bp 0.597696983439685 0.866439453447751 NA NA prediction 0.537484940016131 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219494285 chr2:219494284 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18344 0 0 1 0 1 PLCD4 chr2:219494242 3'AG 219494242 Downstream 43bp 17289 chr9 113459674 113459674 1 + G T UCEC 113459675 + 113459655 113459695 41 CGTACAAAAGGAAGATGCAGGACAGTATCGATGTGTGGCAA CGTACAAAAGGAAGATGCATGACAGTATCGATGTGTGGCAA < 41bp 0.589573657816074 0.858305962544575 NA NA prediction 0.537464609457002 Functional Gain - MUSK ENSG00000030304 CDS Human protein_coding chr9:113459675 chr9:113459674 stopgain 0.999 1 20 hm7G_associated_SNPs_18345 0 0 0 0 1 MUSK chr9:113459605 3'AG 113459605 Downstream 70bp 17290 chr17 73481600 73481600 1 + G T UCEC 73481601 + 73481581 73481621 41 GTGCTGGAAGGACATCTCAGGGAGCGGAAGAAGTGTCTGAC GTGCTGGAAGGACATCTCATGGAGCGGAAGAAGTGTCTGAC < 41bp 0.599357907238631 0.868085540772746 NA NA prediction 0.537455267068231 Functional Gain - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481601 chr17:73481600 nonsynonymous SNV 0.124 1 20 hm7G_associated_SNPs_18346 0 0 1 0 2 TMEM94 chr17:73481509 3'AG 73481509 Downstream 92bp 17291 chr17 73481600 73481600 1 + G T UCEC 73481601 + 73481581 73481621 41 GTGCTGGAAGGACATCTCAGGGAGCGGAAGAAGTGTCTGAC GTGCTGGAAGGACATCTCATGGAGCGGAAGAAGTGTCTGAC < 41bp 0.599357907238631 0.868085540772746 NA NA prediction 0.537455267068231 Functional Gain - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73481601 chr17:73481600 nonsynonymous SNV 0.124 1 20 hm7G_associated_SNPs_18346 0 0 1 0 2 TMEM94 chr17:73481628 5'GT 73481628 Upstream 29bp 17292 chr4 88727301 88727301 1 + G T PAAD 88727302 + 88727282 88727322 41 TGACTCATCCGAAGAAAATGGAGATGACAGTTCAGAAGAGG TGACTCATCCGAAGAAAATTGAGATGACAGTTCAGAAGAGG < 41bp 0.57342431159318 0.842139949490333 NA NA prediction 0.537431275794306 Functional Gain - IBSP ENSG00000029559 CDS Human protein_coding chr4:88727302 chr4:88727301 stopgain 0.997 0 20 hm7G_associated_SNPs_18348 0 0 0 0 2 IBSP chr4:88727274 3'AG 88727274 Downstream 28bp 17293 chr4 88727301 88727301 1 + G T PAAD 88727302 + 88727282 88727322 41 TGACTCATCCGAAGAAAATGGAGATGACAGTTCAGAAGAGG TGACTCATCCGAAGAAAATTGAGATGACAGTTCAGAAGAGG < 41bp 0.57342431159318 0.842139949490333 NA NA prediction 0.537431275794306 Functional Gain - IBSP ENSG00000029559 CDS Human protein_coding chr4:88727302 chr4:88727301 stopgain 0.997 0 20 hm7G_associated_SNPs_18348 0 0 0 0 2 IBSP chr4:88727336 5'GT 88727336 Upstream 36bp 17294 chr5 36677215 36677215 1 + G T UCEC 36677216 + 36677196 36677236 41 TTGGAAACATGAAGGAACAGGGGCAGGCCCTGAGAGAGTTC TTGGAAACATGAAGGAACATGGGCAGGCCCTGAGAGAGTTC < 41bp 0.589127425204227 0.857840874761652 NA NA prediction 0.537426899114849 Functional Gain - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36677216 chr5:36677215 nonsynonymous SNV 0.953 2 20 hm7G_associated_SNPs_18349 0 0 0 0 1 SLC1A3 chr5:36677286 5'GT 36677286 Upstream 72bp 17295 chr1 16058428 16058428 1 + G T THYM 16058429 + 16058409 16058449 41 AGAGCCAACACCACGGATCGGCCCCACGCCTTCCAGGTCAT AGAGCCAACACCACGGATCTGCCCCACGCCTTCCAGGTCAT < 41bp 0.436757276044315 0.768712353035867 NA NA prediction 0.537424706071735 Functional Gain - PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16058429 chr1:16058428 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18350 0 0 1 0 1 PLEKHM2 chr1:16058384 3'AG 16058384 Downstream 45bp 17296 chr2 9531257 9531257 1 + G T GBM 9531258 + 9531238 9531278 41 AGTGTGGACGGTGGAAGCCGGCAGCGATCTTCGTCAGATCC AGTGTGGACGGTGGAAGCCTGCAGCGATCTTCGTCAGATCC < 41bp 0.445571523571678 0.768708762085525 NA NA prediction 0.53741752417105 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9531258 chr2:9531257 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_18351 0 0 1 0 2 ASAP2 chr2:9531191 3'AG 9531191 Downstream 67bp 17297 chr2 9531257 9531257 1 + G T GBM 9531258 + 9531238 9531278 41 AGTGTGGACGGTGGAAGCCGGCAGCGATCTTCGTCAGATCC AGTGTGGACGGTGGAAGCCTGCAGCGATCTTCGTCAGATCC < 41bp 0.445571523571678 0.768708762085525 NA NA prediction 0.53741752417105 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9531258 chr2:9531257 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_18351 0 0 1 0 2 ASAP2 chr2:9531325 5'GT 9531325 Upstream 69bp 17298 chr19 11096009 11096009 1 + G T UCEC 11096010 + 11095990 11096030 41 GCGCTACAACCAGATGAAAGGAATGGGGATGCGGTCAGGGG GCGCTACAACCAGATGAAATGAATGGGGATGCGGTCAGGGG < 41bp 0.588128080000798 0.856831883846087 NA NA prediction 0.537407607690579 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11096010 chr19:11096009 stopgain 0.971 1 20 hm7G_associated_SNPs_18352 0 0 1 0 2 SMARCA4 chr19:11095949 3'AG 11095949 Downstream 61bp 17299 chr19 11096009 11096009 1 + G T UCEC 11096010 + 11095990 11096030 41 GCGCTACAACCAGATGAAAGGAATGGGGATGCGGTCAGGGG GCGCTACAACCAGATGAAATGAATGGGGATGCGGTCAGGGG < 41bp 0.588128080000798 0.856831883846087 NA NA prediction 0.537407607690579 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11096010 chr19:11096009 stopgain 0.971 1 20 hm7G_associated_SNPs_18352 0 0 1 0 2 SMARCA4 chr19:11096081 5'GT 11096081 Upstream 73bp 17300 chr17 76135299 76135299 1 + G T ESCA 76135300 + 76135280 76135320 41 AATGCCAGGGCCATCCACAGGCTCCGGAAGCAGCTGGTGTG AATGCCAGGGCCATCCACATGCTCCGGAAGCAGCTGGTGTG < 41bp 0.596000301855484 0.864686835592663 NA NA prediction 0.537373067474359 Functional Gain - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76135300 chr17:76135299 nonsynonymous SNV 0.837 0 20 hm7G_associated_SNPs_18353 0 0 1 0 2 TMC8 chr17:76135243 3'AG 76135243 Downstream 57bp 17301 chr17 76135299 76135299 1 + G T ESCA 76135300 + 76135280 76135320 41 AATGCCAGGGCCATCCACAGGCTCCGGAAGCAGCTGGTGTG AATGCCAGGGCCATCCACATGCTCCGGAAGCAGCTGGTGTG < 41bp 0.596000301855484 0.864686835592663 NA NA prediction 0.537373067474359 Functional Gain - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76135300 chr17:76135299 nonsynonymous SNV 0.837 0 20 hm7G_associated_SNPs_18353 0 0 1 0 2 TMC8 chr17:76135321 5'GT 76135321 Upstream 23bp 17302 chr3 14939574 14939574 1 + G T LUAD 14939575 + 14939555 14939595 41 AATTGCCTCCACTCTCCCCGGCTGGCAGCTGCTGTCCGTGA AATTGCCTCCACTCTCCCCTGCTGGCAGCTGCTGTCCGTGA < 41bp 0.42801848223105 0.768682187427487 NA NA prediction 0.537364374854974 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14939575 chr3:14939574 nonsynonymous SNV 0.833 0 20 hm7G_associated_SNPs_18355 0 0 0 0 1 FGD5 chr3:14939602 5'GT 14939602 Upstream 29bp 17303 chr3 100277279 100277279 1 + G T LUAD 100277280 + 100277260 100277300 41 TACAACCACACTCATGGCCGGGAAATGCTGGACATCTTTGT TACAACCACACTCATGGCCTGGAAATGCTGGACATCTTTGT < 41bp 0.558275047572824 0.826863488613249 NA NA prediction 0.53717688208085 Functional Gain - TMEM45A ENSG00000181458 CDS Human protein_coding chr3:100277280 chr3:100277279 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_18362 0 0 1 0 1 TMEM45A chr3:100277249 3'AG 100277249 Downstream 31bp 17304 chr7 70880936 70880936 1 + G T LUAD 70880937 + 70880917 70880957 41 ACCCCGGGCTGGTGAAGGTGGTAAGAAATCAGAAGAGGGAA ACCCCGGGCTGGTGAAGGTTGTAAGAAATCAGAAGAGGGAA < 41bp 0.457864596408721 0.768587815959483 NA NA prediction 0.537175631918966 Functional Gain - GALNT17 ENSG00000185274 CDS Human protein_coding chr7:70880937 chr7:70880936 synonymous SNV . 0 20 hm7G_associated_SNPs_18363 0 0 0 0 1 GALNT17 chr7:70880875 3'AG 70880875 Downstream 62bp 17305 chr15 40564853 40564853 1 + G T THYM 40564854 + 40564834 40564874 41 TGGCCCGGGAGAAGCACTCGGGCCGCCAGGTGGCCGTCAAG TGGCCCGGGAGAAGCACTCTGGCCGCCAGGTGGCCGTCAAG < 41bp 0.422619147748284 0.768558609554155 NA NA prediction 0.537117219108311 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40564854 chr15:40564853 synonymous SNV . 0 20 hm7G_associated_SNPs_18366 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40564922 5'GT 40564922 Upstream 70bp 17306 chr1 220275535 220275535 1 + G T LUSC 220275536 + 220275516 220275556 41 TTATTCGTTGGGGAATAATGGCAGATTGGAATAATTGCTAC TTATTCGTTGGGGAATAATTGCAGATTGGAATAATTGCTAC < 41bp 0.455700400166049 0.768558023791921 NA NA prediction 0.537116047583843 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220275536 chr1:220275535 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18367 0 0 1 0 2 IARS2 chr1:220275471 3'AG 220275471 Downstream 65bp 17307 chr1 220275535 220275535 1 + G T LUSC 220275536 + 220275516 220275556 41 TTATTCGTTGGGGAATAATGGCAGATTGGAATAATTGCTAC TTATTCGTTGGGGAATAATTGCAGATTGGAATAATTGCTAC < 41bp 0.455700400166049 0.768558023791921 NA NA prediction 0.537116047583843 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220275536 chr1:220275535 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18367 0 0 1 0 2 IARS2 chr1:220275619 5'GT 220275619 Upstream 85bp 17308 chr2 220072426 220072426 1 + G T COAD 220072427 + 220072407 220072447 41 CTGTGCCTGTGGCCAGAGGGGAGCCCCCTGACCGTGCTGTG CTGTGCCTGTGGCCAGAGGTGAGCCCCCTGACCGTGCTGTG < 41bp 0.440427953486604 0.768547743374001 NA NA prediction 0.537095486748002 Functional Gain - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072427 chr2:220072426 synonymous SNV . 0 20 hm7G_associated_SNPs_18369 0 0 1 0 2 ZFAND2B chr2:220072370 3'AG 220072370 Downstream 57bp 17309 chr2 220072426 220072426 1 + G T COAD 220072427 + 220072407 220072447 41 CTGTGCCTGTGGCCAGAGGGGAGCCCCCTGACCGTGCTGTG CTGTGCCTGTGGCCAGAGGTGAGCCCCCTGACCGTGCTGTG < 41bp 0.440427953486604 0.768547743374001 NA NA prediction 0.537095486748002 Functional Gain - ZFAND2B ENSG00000158552 CDS Human protein_coding chr2:220072427 chr2:220072426 synonymous SNV . 0 20 hm7G_associated_SNPs_18369 0 0 1 0 2 ZFAND2B chr2:220072501 5'GT 220072501 Upstream 76bp 17310 chr12 64879791 64879791 1 + G T UCEC 64879792 + 64879772 64879812 41 ATGCGAAAGGGGATACGATGGCTGATGTAAGTAATAGATTG ATGCGAAAGGGGATACGATTGCTGATGTAAGTAATAGATTG < 41bp 0.571020497468719 0.83954757247652 NA NA prediction 0.537054150015602 Functional Gain - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64879792 chr12:64879791 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_18371 0 0 0 0 2 TBK1 chr12:64879706 3'AG 64879706 Downstream 86bp 17311 chr12 64879791 64879791 1 + G T UCEC 64879792 + 64879772 64879812 41 ATGCGAAAGGGGATACGATGGCTGATGTAAGTAATAGATTG ATGCGAAAGGGGATACGATTGCTGATGTAAGTAATAGATTG < 41bp 0.571020497468719 0.83954757247652 NA NA prediction 0.537054150015602 Functional Gain - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64879792 chr12:64879791 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_18371 0 0 0 0 2 TBK1 chr12:64879797 5'GT 64879797 Upstream 7bp 17312 chr19 1255036 1255036 1 + G T LUAD 1255037 + 1255017 1255057 41 CTTTGTGAATCACGCCCCGGGGGTCTTCTCAGGGACCTTCT CTTTGTGAATCACGCCCCGTGGGTCTTCTCAGGGACCTTCT < 41bp 0.423497040089082 0.768524149189944 NA NA prediction 0.537048298379887 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1255037 chr19:1255036 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_18372 0 0 1 0 1 MIDN chr19:1255060 5'GT 1255060 Upstream 25bp 17313 chr19 32971327 32971327 1 + G T LUSC 32971328 + 32971308 32971348 41 TATCAGATATATGCCAAGAGGGCACCAGAGGAAGTGCATGC TATCAGATATATGCCAAGATGGCACCAGAGGAAGTGCATGC < 41bp 0.57934438752289 0.847864262364584 NA NA prediction 0.537039749683388 Functional Gain - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32971328 chr19:32971327 nonsynonymous SNV 0.794 4 20 hm7G_associated_SNPs_18374 0 0 1 0 1 DPY19L3 chr19:32971305 3'AG 32971305 Downstream 23bp 17314 chr17 72436959 72436959 1 + G T COAD 72436960 + 72436940 72436980 41 CCTTTTCCATGGATGAGCCGGTTGCAGGTGGGTCTCTGTGG CCTTTTCCATGGATGAGCCTGTTGCAGGTGGGTCTCTGTGG < 41bp 0.459519996014934 0.768500190466676 NA NA prediction 0.537000380933353 Functional Gain - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72436960 chr17:72436959 synonymous SNV . 0 20 hm7G_associated_SNPs_18376 0 0 1 0 1 GPRC5C chr17:72436966 5'GT 72436966 Upstream 8bp 17315 chr3 197574801 197574801 1 + G T LUSC 197574802 + 197574782 197574822 41 CAGTTAGTAGAGCGCACTCGGAGAGAGGCTCAGCTTGCTGC CAGTTAGTAGAGCGCACTCTGAGAGAGGCTCAGCTTGCTGC < 41bp 0.592867770411054 0.861357744472664 NA NA prediction 0.536979948123221 Functional Gain - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197574802 chr3:197574801 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_18379 0 0 1 0 2 LRCH3 chr3:197574743 3'AG 197574743 Downstream 59bp 17316 chr3 197574801 197574801 1 + G T LUSC 197574802 + 197574782 197574822 41 CAGTTAGTAGAGCGCACTCGGAGAGAGGCTCAGCTTGCTGC CAGTTAGTAGAGCGCACTCTGAGAGAGGCTCAGCTTGCTGC < 41bp 0.592867770411054 0.861357744472664 NA NA prediction 0.536979948123221 Functional Gain - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197574802 chr3:197574801 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_18379 0 0 1 0 2 LRCH3 chr3:197574892 5'GT 197574892 Upstream 92bp 17317 chr4 25674842 25674842 1 + G T UCEC 25674843 + 25674823 25674863 41 GCTCTGTGCTCAAGGGGCAGGTCGCCACTGTCATCAAGAAG GCTCTGTGCTCAAGGGGCATGTCGCCACTGTCATCAAGAAG < 41bp 0.442255195532795 0.768483217209309 NA NA prediction 0.536966434418618 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25674843 chr4:25674842 nonsynonymous SNV 0.018 3 20 hm7G_associated_SNPs_18383 0 0 0 0 1 SLC34A2 chr4:25674876 5'GT 25674876 Upstream 35bp 17318 chr3 183824315 183824315 1 + G T GBM 183824316 + 183824296 183824336 41 GCGGAGGCAGAGCTGACAGGGGGCTCAGAATGGACAAGGGC GCGGAGGCAGAGCTGACAGTGGGCTCAGAATGGACAAGGGC < 41bp 0.450269797885418 0.768468407792242 NA NA prediction 0.536936815584484 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183824316 chr3:183824315 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_18385 0 0 0 0 1 HTR3E chr3:183824252 3'AG 183824252 Downstream 64bp 17319 chr16 31488651 31488651 1 + G T SKCM 31488652 + 31488632 31488672 41 AATGCTTCGCGCCCTTCTCGGGAGGCAGCTTTTTCGAGCAC AATGCTTCGCGCCCTTCTCTGGAGGCAGCTTTTTCGAGCAC < 41bp 0.447954751669932 0.768465046753476 NA NA prediction 0.536930093506953 Functional Gain - TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31488652 chr16:31488651 synonymous SNV . 0 20 hm7G_associated_SNPs_18386 0 0 0 0 1 TGFB1I1 chr16:31488631 3'AG 31488631 Downstream 21bp 17320 chr14 74154025 74154025 1 + G T UCEC 74154026 + 74154006 74154046 41 TTTTATTGAGAAGTTGAAAGGGATCCACATAATGAAGAAAT TTTTATTGAGAAGTTGAAATGGATCCACATAATGAAGAAAT < 41bp 0.556785645713109 0.825250678184638 NA NA prediction 0.536930064943058 Functional Gain - DNAL1 ENSG00000119661 CDS Human protein_coding chr14:74154026 chr14:74154025 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18387 0 0 1 0 2 DNAL1 chr14:74153962 3'AG 74153962 Downstream 64bp 17321 chr14 74154025 74154025 1 + G T UCEC 74154026 + 74154006 74154046 41 TTTTATTGAGAAGTTGAAAGGGATCCACATAATGAAGAAAT TTTTATTGAGAAGTTGAAATGGATCCACATAATGAAGAAAT < 41bp 0.556785645713109 0.825250678184638 NA NA prediction 0.536930064943058 Functional Gain - DNAL1 ENSG00000119661 CDS Human protein_coding chr14:74154026 chr14:74154025 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18387 0 0 1 0 2 DNAL1 chr14:74154088 5'GT 74154088 Upstream 64bp 17322 chr11 65745041 65745041 1 + G T LUAD 65745042 + 65745022 65745062 41 CTCCATCCCTAGGGCTGCTGGAGACCACAGTGCAGAAGGTG CTCCATCCCTAGGGCTGCTTGAGACCACAGTGCAGAAGGTG < 41bp 0.433210423034079 0.768438625574956 NA NA prediction 0.536877251149912 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65745042 chr11:65745041 synonymous SNV . 0 20 hm7G_associated_SNPs_18389 0 0 1 0 2 SART1 chr11:65745034 3'AG 65745034 Downstream 8bp 17323 chr11 65745041 65745041 1 + G T LUAD 65745042 + 65745022 65745062 41 CTCCATCCCTAGGGCTGCTGGAGACCACAGTGCAGAAGGTG CTCCATCCCTAGGGCTGCTTGAGACCACAGTGCAGAAGGTG < 41bp 0.433210423034079 0.768438625574956 NA NA prediction 0.536877251149912 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65745042 chr11:65745041 synonymous SNV . 0 20 hm7G_associated_SNPs_18389 0 0 1 0 2 SART1 chr11:65745124 5'GT 65745124 Upstream 84bp 17324 chr14 104141907 104141907 1 + G T UCEC 104141908 + 104141888 104141928 41 GATGAAAATAAACCCATCTGGATGCATGCTGAAGAAAGAGA GATGAAAATAAACCCATCTTGATGCATGCTGAAGAAAGAGA < 41bp 0.451802042771712 0.768393149795353 NA NA prediction 0.536786299590706 Functional Gain - KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104141908 chr14:104141907 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18393 0 0 1 0 2 KLC1 chr14:104141889 3'AG 104141889 Downstream 19bp 17325 chr14 104141907 104141907 1 + G T UCEC 104141908 + 104141888 104141928 41 GATGAAAATAAACCCATCTGGATGCATGCTGAAGAAAGAGA GATGAAAATAAACCCATCTTGATGCATGCTGAAGAAAGAGA < 41bp 0.451802042771712 0.768393149795353 NA NA prediction 0.536786299590706 Functional Gain - KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104141908 chr14:104141907 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18393 0 0 1 0 2 KLC1 chr14:104141938 5'GT 104141938 Upstream 32bp 17326 chr4 77871072 77871072 1 + G T LIHC 77871073 + 77871053 77871093 41 TGCGATGGCCGTGGCCGTGGGGAGACCGTCTGTGAGTGCTG TGCGATGGCCGTGGCCGTGTGGAGACCGTCTGTGAGTGCTG < 41bp 0.517486633122383 0.785876195665411 NA NA prediction 0.536779125086056 Functional Gain - SEPT11 ENSG00000138758 CDS Human protein_coding chr4:77871073 chr4:77871072 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_18394 0 0 1 0 1 SEPT11 chr4:77871083 5'GT 77871083 Upstream 12bp 17327 chr19 41062044 41062044 1 + G T LUAD 41062045 + 41062025 41062065 41 GCCTGTACGTGGCGCTCAAGGAGCTGGGTGAGGAGCGCCGG GCCTGTACGTGGCGCTCAATGAGCTGGGTGAGGAGCGCCGG < 41bp 0.43102211666054 0.768378125692368 NA NA prediction 0.536756251384737 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41062045 chr19:41062044 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18395 0 0 0 0 1 SPTBN4 chr19:41061990 3'AG 41061990 Downstream 55bp 17328 chr4 99264294 99264294 1 + G T LIHC 99264295 + 99264275 99264315 41 ATGTATCTCTTTTAGATACGGAAACAAGTGAAAAAATCCAA ATGTATCTCTTTTAGATACTGAAACAAGTGAAAAAATCCAA < 41bp 0.565611178645112 0.833988590963087 NA NA prediction 0.536754824635951 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99264295 chr4:99264294 synonymous SNV . 0 20 hm7G_associated_SNPs_18396 0 0 1 0 1 RAP1GDS1 chr4:99264290 3'AG 99264290 Downstream 5bp 17329 chr4 5830329 5830329 1 - C A COAD 5830328 - 5830308 5830348 41 ACTAGTGGTCATCAGCCAGGGCAAGATCGTCTTTGAAGACG ACTAGTGGTCATCAGCCAGTGCAAGATCGTCTTTGAAGACG < 41bp 0.423619464100349 0.768373811136175 NA NA prediction 0.536747622272351 Functional Gain - CRMP1 ENSG00000072832 CDS Human protein_coding chr4:5830328 chr4:5830329 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18397 0 0 0 0 1 CRMP1 chr4:5830395 3'AG 5830395 Downstream 67bp 17330 chr16 25180502 25180502 1 + G T UCEC 25180503 + 25180483 25180523 41 ACGCCAGTGTGACCTGGCGGGAGTGGAGACCTGCAAGTCAT ACGCCAGTGTGACCTGGCGTGAGTGGAGACCTGCAAGTCAT < 41bp 0.594778159721751 0.86314967512523 NA NA prediction 0.536743030806958 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25180503 chr16:25180502 stopgain 0.997 1 20 hm7G_associated_SNPs_18398 0 0 1 0 2 LCMT1 chr16:25180433 3'AG 25180433 Downstream 70bp 17331 chr16 25180502 25180502 1 + G T UCEC 25180503 + 25180483 25180523 41 ACGCCAGTGTGACCTGGCGGGAGTGGAGACCTGCAAGTCAT ACGCCAGTGTGACCTGGCGTGAGTGGAGACCTGCAAGTCAT < 41bp 0.594778159721751 0.86314967512523 NA NA prediction 0.536743030806958 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25180503 chr16:25180502 stopgain 0.997 1 20 hm7G_associated_SNPs_18398 0 0 1 0 2 LCMT1 chr16:25180534 5'GT 25180534 Upstream 33bp 17332 chr19 52868954 52868954 1 + G T UCEC 52868955 + 52868935 52868975 41 CTTTCTTCTTTTCTAGGGAGGAGCTGTGTATTGGGAAGCAA CTTTCTTCTTTTCTAGGGATGAGCTGTGTATTGGGAAGCAA < 41bp 0.554941041889001 0.823306562178395 NA NA prediction 0.536731040578788 Functional Gain - ZNF610 ENSG00000167554 CDS Human protein_coding chr19:52868955 chr19:52868954 nonsynonymous SNV 0.154 2 20 hm7G_associated_SNPs_18400 0 0 0 0 1 ZNF610 chr19:52868951 3'AG 52868951 Downstream 4bp 17333 chr5 131714157 131714157 1 + G T UVM 131714158 + 131714138 131714178 41 GTTGGGCTCCTTCATTTCAGGGCAGCTGTCAGACAGGTAAG GTTGGGCTCCTTCATTTCATGGCAGCTGTCAGACAGGTAAG < 41bp 0.597804824839769 0.866168644225042 NA NA prediction 0.536727638770546 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131714158 chr5:131714157 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_18401 0 0 1 0 2 SLC22A5 chr5:131714070 3'AG 131714070 Downstream 88bp 17334 chr5 131714157 131714157 1 + G T UVM 131714158 + 131714138 131714178 41 GTTGGGCTCCTTCATTTCAGGGCAGCTGTCAGACAGGTAAG GTTGGGCTCCTTCATTTCATGGCAGCTGTCAGACAGGTAAG < 41bp 0.597804824839769 0.866168644225042 NA NA prediction 0.536727638770546 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131714158 chr5:131714157 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_18401 0 0 1 0 2 SLC22A5 chr5:131714173 5'GT 131714173 Upstream 17bp 17335 chr18 77475469 77475469 1 + G T ACC 77475470 + 77475450 77475490 41 GGAGCGAAGATCCTCACTCGGCTGGTGCTGAGCCCCGACGC GGAGCGAAGATCCTCACTCTGCTGGTGCTGAGCCCCGACGC < 41bp 0.434326805364657 0.768346320209975 NA NA prediction 0.536692640419949 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77475470 chr18:77475469 nonsynonymous SNV 0.301 0 20 hm7G_associated_SNPs_18404 0 0 1 0 1 CTDP1 chr18:77475528 5'GT 77475528 Upstream 60bp 17336 chr18 618041 618041 1 + G T UCEC 618042 + 618022 618062 41 TTTATTGTGTGTCTGCTGTGGTTGAAAGACAGTCACTGCGC TTTATTGTGTGTCTGCTGTTGTTGAAAGACAGTCACTGCGC < 41bp 0.557701628765254 0.826036533545009 NA NA prediction 0.536669809559512 Functional Gain - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:618042 chr18:618041 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_18408 0 0 1 0 1 CLUL1 chr18:617988 3'AG 617988 Downstream 54bp 17337 chr1 9017324 9017324 1 + G T COAD 9017325 + 9017305 9017345 41 CTCTGAGCACACCGTGGACGGGATCAGACATGTGATCGAGG CTCTGAGCACACCGTGGACTGGATCAGACATGTGATCGAGG < 41bp 0.59434921284766 0.862682775104064 NA NA prediction 0.536667124512808 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9017325 chr1:9017324 nonsynonymous SNV 0.058 4 20 hm7G_associated_SNPs_18409 0 0 0 0 1 CA6 chr1:9017344 5'GT 9017344 Upstream 21bp 17338 chr16 68072034 68072034 1 + G T rs192210401 68072035 + 68072015 68072055 41 TGGCCCTGGATTATGGAGCGGACATTGTTTACTGTGAGGTA TGGCCCTGGATTATGGAGCTGACATTGTTTACTGTGAGGTA < 41bp 0.442173787544989 0.768330611636358 NA NA prediction 0.536661223272716 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68072035 chr16:68072034 synonymous SNV . 0 20 hm7G_associated_SNPs_18410 0 0 1 0 1 DUS2 chr16:68072052 5'GT 68072052 Upstream 19bp 17339 chr1 52747475 52747475 1 + G T LUSC 52747476 + 52747456 52747496 41 ACTTTGTGCAGCTTTATCGGGATGCTCTGGCAGGTAGGAAT ACTTTGTGCAGCTTTATCGTGATGCTCTGGCAGGTAGGAAT < 41bp 0.442892952644727 0.768318254016326 NA NA prediction 0.536636508032651 Functional Gain - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52747476 chr1:52747475 synonymous SNV . 0 20 hm7G_associated_SNPs_18411 0 0 1 0 1 ZFYVE9 chr1:52747488 5'GT 52747488 Upstream 14bp 17340 chrX 86890576 86890576 1 + G T LUSC 86890577 + 86890557 86890597 41 ATCTAGATTATATGCTATTGGTGGACGTGATGGAAGTTCCT ATCTAGATTATATGCTATTTGTGGACGTGATGGAAGTTCCT < 41bp 0.470930605024735 0.76831481673188 NA NA prediction 0.536629633463759 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86890577 chrX:86890576 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18413 0 0 0 0 1 KLHL4 chrX:86890563 3'AG 86890563 Downstream 14bp 17341 chr6 26426514 26426514 1 + G T CESC 26426515 + 26426495 26426535 41 AATGAGAGACCACGAGGACGGGGGCATCCAGCTGGAGTGCA AATGAGAGACCACGAGGACTGGGGCATCCAGCTGGAGTGCA < 41bp 0.562477449336118 0.830778297142867 NA NA prediction 0.536601695613497 Functional Gain - BTN2A3P ENSG00000124549 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:26426515 chr6:26426514 . . 0 20 hm7G_associated_SNPs_18414 0 0 1 0 1 BTN2A3P chr6:26426470 3'AG 26426470 Downstream 45bp 17342 chr11 67186991 67186991 1 + G T UCEC 67186992 + 67186972 67187012 41 CAGTGGCTGGCGCTGGCGGGGGCGGCAGGCATGGCGTCTGC CAGTGGCTGGCGCTGGCGGTGGCGGCAGGCATGGCGTCTGC < 41bp 0.42539989417223 0.768299022212381 NA NA prediction 0.536598044424762 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67186992 chr11:67186991 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_18415 0 0 0 0 1 CARNS1 chr11:67186958 3'AG 67186958 Downstream 34bp 17343 chr19 42793230 42793230 1 + G T UCEC 42793231 + 42793211 42793251 41 TAGACAGTCAGGCGCTACAGGAACTGACGCAGGTCTAGGGT TAGACAGTCAGGCGCTACATGAACTGACGCAGGTCTAGGGT < 41bp 0.599077372443381 0.867366790082056 NA NA prediction 0.536578835277349 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42793231 chr19:42793230 nonsynonymous SNV 0.951 3 20 hm7G_associated_SNPs_18416 0 0 1 0 1 CIC chr19:42793242 5'GT 42793242 Upstream 13bp 17344 chr12 57905498 57905498 1 + G T STAD 57905499 + 57905479 57905519 41 AGCTGGAGAAGCGACTGGAGGAGTGGTTGGGGAGGACATTG AGCTGGAGAAGCGACTGGATGAGTGGTTGGGGAGGACATTG < 41bp 0.586572149479572 0.854857442726852 NA NA prediction 0.53657058649456 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57905499 chr12:57905498 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_18417 0 0 1 0 1 MARS chr12:57905481 3'AG 57905481 Downstream 18bp 17345 chrX 110390965 110390965 1 + G T LUAD 110390966 + 110390946 110390986 41 TCCCTTTGGTTGTCCACAGGGAATTCCAGAGCAATGGGCAC TCCCTTTGGTTGTCCACAGTGAATTCCAGAGCAATGGGCAC < 41bp 0.446911916522718 0.768269275165621 NA NA prediction 0.536538550331242 Functional Gain - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110390966 chrX:110390965 stopgain 0.998 1 20 hm7G_associated_SNPs_18418 0 0 0 0 1 PAK3 chrX:110390965 3'AG 110390965 Downstream 1bp 17346 chrX 149783119 149783119 1 + G T UCEC 149783120 + 149783100 149783140 41 CTCGAGAATTGAAAAAATGGGAGGCGCGACAAGTAGAGGAG CTCGAGAATTGAAAAAATGTGAGGCGCGACAAGTAGAGGAG < 41bp 0.569751780941239 0.838017178335704 NA NA prediction 0.536530794788929 Functional Gain - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149783120 chrX:149783119 stopgain 1.000 1 20 hm7G_associated_SNPs_18419 0 0 1 0 2 MTM1 chrX:149783062 3'AG 149783062 Downstream 58bp 17347 chrX 149783119 149783119 1 + G T UCEC 149783120 + 149783100 149783140 41 CTCGAGAATTGAAAAAATGGGAGGCGCGACAAGTAGAGGAG CTCGAGAATTGAAAAAATGTGAGGCGCGACAAGTAGAGGAG < 41bp 0.569751780941239 0.838017178335704 NA NA prediction 0.536530794788929 Functional Gain - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149783120 chrX:149783119 stopgain 1.000 1 20 hm7G_associated_SNPs_18419 0 0 1 0 2 MTM1 chrX:149783172 5'GT 149783172 Upstream 54bp 17348 chr9 17747126 17747126 1 + G T LUAD 17747127 + 17747107 17747147 41 ATGATGACTTCAAAGAGATGGAAAGGGTAAGCCTTCACTAC ATGATGACTTCAAAGAGATTGAAAGGGTAAGCCTTCACTAC < 41bp 0.447287842617997 0.76825395642308 NA NA prediction 0.53650791284616 Functional Gain - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17747127 chr9:17747126 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18420 0 0 0 0 1 SH3GL2 chr9:17747064 3'AG 17747064 Downstream 63bp 17349 chr20 62559701 62559701 1 + G T LUAD 62559702 + 62559682 62559722 41 TTCTAGAATAGCCTAACATGGCAGACCAGAGACAGCGCTCA TTCTAGAATAGCCTAACATTGCAGACCAGAGACAGCGCTCA < 41bp 0.591580192968497 0.859831336775219 NA NA prediction 0.536502287613445 Functional Gain - DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62559702 chr20:62559701 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_18421 0 0 1 0 1 DNAJC5 chr20:62559688 3'AG 62559688 Downstream 14bp 17350 chr16 67859858 67859858 1 + G T ACC 67859859 + 67859839 67859879 41 GCTACGAGGAGGTTCGCAAGGAGCATGAGATCCTCATGCAG GCTACGAGGAGGTTCGCAATGAGCATGAGATCCTCATGCAG < 41bp 0.434590435650428 0.768248123163115 NA NA prediction 0.53649624632623 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859859 chr16:67859858 nonsynonymous SNV 0.240 2 20 hm7G_associated_SNPs_18423 0 0 0 0 1 TSNAXIP1 chr16:67859820 3'AG 67859820 Downstream 39bp 17351 chrX 41088852 41088852 1 + G T LUAD 41088853 + 41088833 41088873 41 TTAAAAGAAAGTGGACCTGGGCAGTGGAATGGCTTGGAGAT TTAAAAGAAAGTGGACCTGTGCAGTGGAATGGCTTGGAGAT < 41bp 0.562993900175236 0.831217226469561 NA NA prediction 0.53644665258865 Functional Gain - USP9X ENSG00000124486 CDS Human protein_coding chrX:41088853 chrX:41088852 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18425 0 0 1 0 1 USP9X chrX:41088820 3'AG 41088820 Downstream 33bp 17352 chr14 52186842 52186842 1 + G T STAD 52186843 + 52186823 52186863 41 ATGGACCAGCTGGAAAAACGGTCGCGGGCCAGCGGGAGCAG ATGGACCAGCTGGAAAAACTGTCGCGGGCCAGCGGGAGCAG < 41bp 0.575498072106653 0.843711785080569 NA NA prediction 0.536427425947832 Functional Gain - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52186843 chr14:52186842 nonsynonymous SNV 0.448 2 20 hm7G_associated_SNPs_18426 0 0 1 0 1 FRMD6 chr14:52186773 3'AG 52186773 Downstream 70bp 17353 chr2 231115770 231115770 1 + G T LUSC 231115771 + 231115751 231115791 41 TAGCTCCCTAGCAAGATGTGGGTCAGGTAAAGAAGGGGAGG TAGCTCCCTAGCAAGATGTTGGTCAGGTAAAGAAGGGGAGG < 41bp 0.447723113764753 0.768203809681189 NA NA prediction 0.536407619362378 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231115771 chr2:231115770 nonsynonymous SNV 0.276 2 20 hm7G_associated_SNPs_18428 0 0 0 0 2 SP140 chr2:231115696 3'AG 231115696 Downstream 75bp 17354 chr2 231115770 231115770 1 + G T LUSC 231115771 + 231115751 231115791 41 TAGCTCCCTAGCAAGATGTGGGTCAGGTAAAGAAGGGGAGG TAGCTCCCTAGCAAGATGTTGGTCAGGTAAAGAAGGGGAGG < 41bp 0.447723113764753 0.768203809681189 NA NA prediction 0.536407619362378 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231115771 chr2:231115770 nonsynonymous SNV 0.276 2 20 hm7G_associated_SNPs_18428 0 0 0 0 2 SP140 chr2:231115776 5'GT 231115776 Upstream 7bp 17355 chr13 113512227 113512227 1 + G T UCEC 113512228 + 113512208 113512248 41 TGATTCTGGAAGCGCACGTGGGCATAGGTGAGCTTCGTCCT TGATTCTGGAAGCGCACGTTGGCATAGGTGAGCTTCGTCCT < 41bp 0.429005746606193 0.768199503532212 NA NA prediction 0.536399007064424 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113512228 chr13:113512227 synonymous SNV . 0 20 hm7G_associated_SNPs_18429 0 0 1 0 2 ATP11A chr13:113512132 3'AG 113512132 Downstream 96bp 17356 chr13 113512227 113512227 1 + G T UCEC 113512228 + 113512208 113512248 41 TGATTCTGGAAGCGCACGTGGGCATAGGTGAGCTTCGTCCT TGATTCTGGAAGCGCACGTTGGCATAGGTGAGCTTCGTCCT < 41bp 0.429005746606193 0.768199503532212 NA NA prediction 0.536399007064424 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113512228 chr13:113512227 synonymous SNV . 0 20 hm7G_associated_SNPs_18429 0 0 1 0 2 ATP11A chr13:113512234 5'GT 113512234 Upstream 8bp 17357 chr1 150471495 150471495 1 + G T LUAD 150471496 + 150471476 150471516 41 TGGGGGACCCTTGCCTTTGGGACCAGGCCGAACAGGTGAGT TGGGGGACCCTTGCCTTTGTGACCAGGCCGAACAGGTGAGT < 41bp 0.435035990456652 0.768181621138614 NA NA prediction 0.536363242277227 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471496 chr1:150471495 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18430 0 0 0 0 1 TARS2 chr1:150471510 5'GT 150471510 Upstream 16bp 17358 chr12 7261050 7261050 1 + G T UCEC 7261051 + 7261031 7261071 41 CGGGTTGGGCAAGCCTGGAGGACTCCCCAGAGAAGCAGCCA CGGGTTGGGCAAGCCTGGATGACTCCCCAGAGAAGCAGCCA < 41bp 0.450251330403772 0.768170076031367 NA NA prediction 0.536340152062735 Functional Gain - C1RL ENSG00000139178 CDS Human other chr12:7261051 chr12:7261050 nonsynonymous SNV 0.980 1 20 hm7G_associated_SNPs_18432 0 0 0 0 1 C1RL-AS1;C1RL chr12:7261077 5'GT 7261077 Upstream 28bp 17359 chr19 57132710 57132710 1 + G T HNSC 57132711 + 57132691 57132731 41 AGACAAGCTCTCCGTTGTTGGGGAGGCCACGGGGGGACCCA AGACAAGCTCTCCGTTGTTTGGGAGGCCACGGGGGGACCCA < 41bp 0.579109787130577 0.847269442050283 NA NA prediction 0.536319309839412 Functional Gain - ZNF71 ENSG00000197951 CDS Human protein_coding chr19:57132711 chr19:57132710 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_18434 0 0 0 0 1 ZNF71 chr19:57132636 3'AG 57132636 Downstream 75bp 17360 chr11 59861506 59861506 1 + G T LUAD 59861507 + 59861487 59861527 41 TGTGTCACTCACAATCTGTGGAGCTGGGGAAGAACTCAAAG TGTGTCACTCACAATCTGTTGAGCTGGGGAAGAACTCAAAG < 41bp 0.452261310170281 0.768154091918859 NA NA prediction 0.536308183837717 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59861507 chr11:59861506 stopgain 0.001 0 20 hm7G_associated_SNPs_18435 0 0 0 0 2 MS4A2 chr11:59861437 3'AG 59861437 Downstream 70bp 17361 chr11 59861506 59861506 1 + G T LUAD 59861507 + 59861487 59861527 41 TGTGTCACTCACAATCTGTGGAGCTGGGGAAGAACTCAAAG TGTGTCACTCACAATCTGTTGAGCTGGGGAAGAACTCAAAG < 41bp 0.452261310170281 0.768154091918859 NA NA prediction 0.536308183837717 Functional Gain - MS4A2 ENSG00000149534 CDS Human protein_coding chr11:59861507 chr11:59861506 stopgain 0.001 0 20 hm7G_associated_SNPs_18435 0 0 0 0 2 MS4A2 chr11:59861535 5'GT 59861535 Upstream 30bp 17362 chr15 42622813 42622813 1 + G T UCEC 42622814 + 42622794 42622834 41 ACTGATAAAACGATCTAAAGGGAAGGAGAGACCCTTTGTTC ACTGATAAAACGATCTAAATGGAAGGAGAGACCCTTTGTTC < 41bp 0.59223996998733 0.860386342783047 NA NA prediction 0.536292745591434 Functional Gain - GANC ENSG00000214013 CDS Human protein_coding chr15:42622814 chr15:42622813 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_18436 0 0 0 0 2 GANC chr15:42622774 3'AG 42622774 Downstream 40bp 17363 chr15 42622813 42622813 1 + G T UCEC 42622814 + 42622794 42622834 41 ACTGATAAAACGATCTAAAGGGAAGGAGAGACCCTTTGTTC ACTGATAAAACGATCTAAATGGAAGGAGAGACCCTTTGTTC < 41bp 0.59223996998733 0.860386342783047 NA NA prediction 0.536292745591434 Functional Gain - GANC ENSG00000214013 CDS Human protein_coding chr15:42622814 chr15:42622813 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_18436 0 0 0 0 2 GANC chr15:42622870 5'GT 42622870 Upstream 58bp 17364 chr11 44074971 44074971 1 + G T UCEC 44074972 + 44074952 44074992 41 TTAGGGGAAAAAGGTCCGAGGCCTTGTGCTAATCAACCCTC TTAGGGGAAAAAGGTCCGATGCCTTGTGCTAATCAACCCTC < 41bp 0.434033889992393 0.768140687487337 NA NA prediction 0.536281374974674 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44074972 chr11:44074971 nonsynonymous SNV 0.199 5 20 hm7G_associated_SNPs_18437 0 0 0 0 2 ACCSL chr11:44074956 3'AG 44074956 Downstream 16bp 17365 chr11 44074971 44074971 1 + G T UCEC 44074972 + 44074952 44074992 41 TTAGGGGAAAAAGGTCCGAGGCCTTGTGCTAATCAACCCTC TTAGGGGAAAAAGGTCCGATGCCTTGTGCTAATCAACCCTC < 41bp 0.434033889992393 0.768140687487337 NA NA prediction 0.536281374974674 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44074972 chr11:44074971 nonsynonymous SNV 0.199 5 20 hm7G_associated_SNPs_18437 0 0 0 0 2 ACCSL chr11:44075056 5'GT 44075056 Upstream 86bp 17366 chrX 107315990 107315990 1 + G T LUAD 107315991 + 107315971 107316011 41 TTCCTGTCTCTCTGCGCTTGGAACACCTTCCCCTGTGTACT TTCCTGTCTCTCTGCGCTTTGAACACCTTCCCCTGTGTACT < 41bp 0.453544303329124 0.768136008586512 NA NA prediction 0.536272017173024 Functional Gain - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107315991 chrX:107315990 stopgain 0.872 1 20 hm7G_associated_SNPs_18438 0 0 0 0 2 VSIG1 chrX:107315907 3'AG 107315907 Downstream 84bp 17367 chrX 107315990 107315990 1 + G T LUAD 107315991 + 107315971 107316011 41 TTCCTGTCTCTCTGCGCTTGGAACACCTTCCCCTGTGTACT TTCCTGTCTCTCTGCGCTTTGAACACCTTCCCCTGTGTACT < 41bp 0.453544303329124 0.768136008586512 NA NA prediction 0.536272017173024 Functional Gain - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107315991 chrX:107315990 stopgain 0.872 1 20 hm7G_associated_SNPs_18438 0 0 0 0 2 VSIG1 chrX:107316062 5'GT 107316062 Upstream 73bp 17368 chr19 39912892 39912892 1 + G T LUSC 39912893 + 39912873 39912913 41 CAATCACTGAAGAAATCCTGGAACTGCTGAATCAGCGAGGC CAATCACTGAAGAAATCCTTGAACTGCTGAATCAGCGAGGC < 41bp 0.424275177237093 0.768129999909379 NA NA prediction 0.536259999818759 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39912893 chr19:39912892 synonymous SNV . 0 20 hm7G_associated_SNPs_18440 0 0 1 0 1 PLEKHG2 chr19:39912928 5'GT 39912928 Upstream 37bp 17369 chr2 32891709 32891709 1 + G T LIHC 32891710 + 32891690 32891730 41 TTGTTTTTTCAGGTGCTTTGGGAAAAAGAACACGGTTCCAG TTGTTTTTTCAGGTGCTTTTGGAAAAAGAACACGGTTCCAG < 41bp 0.577757471461554 0.845878790041115 NA NA prediction 0.536242637159122 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32891710 chr2:32891709 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18441 0 0 1 0 1 TTC27 chr2:32891702 3'AG 32891702 Downstream 8bp 17370 chr15 23444037 23444037 1 + G T LUSC 23444038 + 23444018 23444058 41 GAACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCCAT GAACATCTGGACAGTGAGGTGGAGGAGGCACCTCGGCCCAT < 41bp 0.545595525181098 0.813705163970955 NA NA prediction 0.536219277579714 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444038 chr15:23444037 . . 0 20 hm7G_associated_SNPs_18445 0 0 0 0 2 GOLGA8EP chr15:23444007 3'AG 23444007 Downstream 31bp 17371 chr15 23444037 23444037 1 + G T LUSC 23444038 + 23444018 23444058 41 GAACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCCAT GAACATCTGGACAGTGAGGTGGAGGAGGCACCTCGGCCCAT < 41bp 0.545595525181098 0.813705163970955 NA NA prediction 0.536219277579714 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444038 chr15:23444037 . . 0 20 hm7G_associated_SNPs_18445 0 0 0 0 2 GOLGA8EP chr15:23444098 5'GT 23444098 Upstream 62bp 17372 chr1 99753596 99753596 1 + G T LUAD 99753597 + 99753577 99753617 41 CTTCAAACCTGTGCACTCTGGATTTAGCTGCTATGACCGGA CTTCAAACCTGTGCACTCTTGATTTAGCTGCTATGACCGGA < 41bp 0.590457695606913 0.858567207379142 NA NA prediction 0.536219023544457 Functional Gain - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99753597 chr1:99753596 stopgain 0.998 1 20 hm7G_associated_SNPs_18446 0 0 0 0 1 PLPPR4 chr1:99753521 3'AG 99753521 Downstream 76bp 17373 chr8 145736245 145736245 1 + G T SARC 145736246 + 145736226 145736266 41 CACCACAGTCACCTTCACTGGGATGATGCGCTGCAGCCAGC CACCACAGTCACCTTCACTTGGATGATGCGCTGCAGCCAGC < 41bp 0.432441582737154 0.768093627796237 NA NA prediction 0.536187255592473 Functional Gain - MFSD3 ENSG00000167700 CDS Human protein_coding chr8:145736246 chr8:145736245 nonsynonymous SNV 0.742 1 20 hm7G_associated_SNPs_18448 0 0 1 0 1 MFSD3 chr8:145736286 5'GT 145736286 Upstream 42bp 17374 chr2 17953927 17953927 1 + G T UCEC 17953928 + 17953908 17953948 41 TAAGGATCATGAACGTAATGGATGCAGATTATGTAAAAGTG TAAGGATCATGAACGTAATTGATGCAGATTATGTAAAAGTG < 41bp 0.457258223122514 0.768071975677209 NA NA prediction 0.536143951354417 Functional Gain - GEN1 ENSG00000178295 CDS Human protein_coding chr2:17953928 chr2:17953927 stopgain 0.998 1 20 hm7G_associated_SNPs_18450 0 0 1 0 1 GEN1 chr2:17953901 3'AG 17953901 Downstream 27bp 17375 chr6 401728 401728 1 + G T LUSC 401729 + 401709 401749 41 ACGACCGGCCCAACAAACTGGAGAGAGACCAGACCTGCAAG ACGACCGGCCCAACAAACTTGAGAGAGACCAGACCTGCAAG < 41bp 0.433835295156661 0.768068444528759 NA NA prediction 0.536136889057519 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:401729 chr6:401728 synonymous SNV . 0 20 hm7G_associated_SNPs_18452 0 0 0 0 1 IRF4 chr6:401777 5'GT 401777 Upstream 50bp 17376 chr16 1779542 1779542 1 + G T COAD 1779543 + 1779523 1779563 41 CAAGATGCAGCAGGTCGGAGGAAACAGCCAGACCGAGAGCA CAAGATGCAGCAGGTCGGATGAAACAGCCAGACCGAGAGCA < 41bp 0.42511524703644 0.768066745057978 NA NA prediction 0.536133490115957 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1779543 chr16:1779542 stopgain 0.133 1 20 hm7G_associated_SNPs_18453 0 0 1 0 2 MAPK8IP3 chr16:1779488 3'AG 1779488 Downstream 55bp 17377 chr16 1779542 1779542 1 + G T COAD 1779543 + 1779523 1779563 41 CAAGATGCAGCAGGTCGGAGGAAACAGCCAGACCGAGAGCA CAAGATGCAGCAGGTCGGATGAAACAGCCAGACCGAGAGCA < 41bp 0.42511524703644 0.768066745057978 NA NA prediction 0.536133490115957 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1779543 chr16:1779542 stopgain 0.133 1 20 hm7G_associated_SNPs_18453 0 0 1 0 2 MAPK8IP3 chr16:1779579 5'GT 1779579 Upstream 38bp 17378 chr9 125143995 125143995 1 + G T LUSC 125143996 + 125143976 125144016 41 GAGCGTCAGTATCAACTGCGGCTCTTTAAGGATGGGAAACT GAGCGTCAGTATCAACTGCTGCTCTTTAAGGATGGGAAACT < 41bp 0.597339939208379 0.865405841772777 NA NA prediction 0.536131805128796 Functional Gain - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125143996 chr9:125143995 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_18454 0 0 0 0 2 PTGS1 chr9:125143943 3'AG 125143943 Downstream 53bp 17379 chr9 125143995 125143995 1 + G T LUSC 125143996 + 125143976 125144016 41 GAGCGTCAGTATCAACTGCGGCTCTTTAAGGATGGGAAACT GAGCGTCAGTATCAACTGCTGCTCTTTAAGGATGGGAAACT < 41bp 0.597339939208379 0.865405841772777 NA NA prediction 0.536131805128796 Functional Gain - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125143996 chr9:125143995 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_18454 0 0 0 0 2 PTGS1 chr9:125144026 5'GT 125144026 Upstream 32bp 17380 chrX 134993766 134993766 1 + G T COAD 134993767 + 134993747 134993787 41 TCATTCACGATATCCAGGAGGAGGAGATGGAAAATGATCAA TCATTCACGATATCCAGGATGAGGAGATGGAAAATGATCAA < 41bp 0.540102920045298 0.808164325715296 NA NA prediction 0.536122811339995 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134993767 chrX:134993766 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_18455 0 0 0 0 1 SAGE1 chrX:134993738 3'AG 134993738 Downstream 29bp 17381 chr19 43922137 43922137 1 + G T UCEC 43922138 + 43922118 43922158 41 TACAACTCGATGCTATCAAGGAAAACTTGAGATCACTGGAG TACAACTCGATGCTATCAATGAAAACTTGAGATCACTGGAG < 41bp 0.58113891372822 0.849186924407903 NA NA prediction 0.536096021359366 Functional Gain - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43922138 chr19:43922137 stopgain 0.984 1 20 hm7G_associated_SNPs_18457 0 0 0 0 1 TEX101 chr19:43922158 5'GT 43922158 Upstream 22bp 17382 chr17 72306245 72306245 1 + G T LUAD 72306246 + 72306226 72306266 41 TGGGGACAACCACCCTGCTGGAGGTCTCGCCTGGGCTCTCT TGGGGACAACCACCCTGCTTGAGGTCTCGCCTGGGCTCTCT < 41bp 0.423488573600482 0.768003538848741 NA NA prediction 0.536007077697481 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306246 chr17:72306245 synonymous SNV . 0 20 hm7G_associated_SNPs_18461 0 0 0 0 3 DNAI2 chr17:72306156 3'AG 72306156 Downstream 90bp 17383 chr17 72306245 72306245 1 + G T LUAD 72306246 + 72306226 72306266 41 TGGGGACAACCACCCTGCTGGAGGTCTCGCCTGGGCTCTCT TGGGGACAACCACCCTGCTTGAGGTCTCGCCTGGGCTCTCT < 41bp 0.423488573600482 0.768003538848741 NA NA prediction 0.536007077697481 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306246 chr17:72306245 synonymous SNV . 0 20 hm7G_associated_SNPs_18461 0 0 0 0 3 DNAI2 chr17:72306192 3'AG 72306192 Downstream 54bp 17384 chr17 72306245 72306245 1 + G T LUAD 72306246 + 72306226 72306266 41 TGGGGACAACCACCCTGCTGGAGGTCTCGCCTGGGCTCTCT TGGGGACAACCACCCTGCTTGAGGTCTCGCCTGGGCTCTCT < 41bp 0.423488573600482 0.768003538848741 NA NA prediction 0.536007077697481 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72306246 chr17:72306245 synonymous SNV . 0 20 hm7G_associated_SNPs_18461 0 0 0 0 3 DNAI2 chr17:72306302 5'GT 72306302 Upstream 58bp 17385 chr11 64332714 64332714 1 + G T UCEC 64332715 + 64332695 64332735 41 TGCTGATGTCCAGCGTGAAGGAGGAGGTGGCCTCTGCAAAG TGCTGATGTCCAGCGTGAATGAGGAGGTGGCCTCTGCAAAG < 41bp 0.457597073897888 0.76799875169073 NA NA prediction 0.53599750338146 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64332715 chr11:64332714 nonsynonymous SNV 0.931 1 20 hm7G_associated_SNPs_18462 0 0 0 0 2 SLC22A11 chr11:64332694 3'AG 64332694 Downstream 21bp 17386 chr11 64332714 64332714 1 + G T UCEC 64332715 + 64332695 64332735 41 TGCTGATGTCCAGCGTGAAGGAGGAGGTGGCCTCTGCAAAG TGCTGATGTCCAGCGTGAATGAGGAGGTGGCCTCTGCAAAG < 41bp 0.457597073897888 0.76799875169073 NA NA prediction 0.53599750338146 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64332715 chr11:64332714 nonsynonymous SNV 0.931 1 20 hm7G_associated_SNPs_18462 0 0 0 0 2 SLC22A11 chr11:64332809 5'GT 64332809 Upstream 96bp 17387 chr11 66272210 66272210 1 + G T SARC 66272211 + 66272191 66272231 41 CTGCTGCGTAAGGAATCTCGGAAGCTCATTGTTCAGCCCAA CTGCTGCGTAAGGAATCTCTGAAGCTCATTGTTCAGCCCAA < 41bp 0.589535899615402 0.857495211400571 NA NA prediction 0.535918623570338 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66272211 chr11:66272210 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18464 0 0 0 0 1 DPP3 chr11:66272245 5'GT 66272245 Upstream 36bp 17388 chr2 170492733 170492733 1 + G T HNSC 170492734 + 170492714 170492754 41 GTGAAAGATGGATCAAGGGGGATAAGTAAGATTTAACTATT GTGAAAGATGGATCAAGGGTGATAAGTAAGATTTAACTATT < 41bp 0.4654347845032 0.76794906759556 NA NA prediction 0.535898135191121 Functional Gain - PPIG ENSG00000138398 CDS Human protein_coding chr2:170492734 chr2:170492733 synonymous SNV . 0 20 hm7G_associated_SNPs_18465 0 0 1 0 1 PPIG chr2:170492738 5'GT 170492738 Upstream 6bp 17389 chr11 82877729 82877729 1 + G T SARC 82877730 + 82877710 82877750 41 TCCAAGTCTGCCAAAAGATGGAAATCTGGTTGGGAAGAAAA TCCAAGTCTGCCAAAAGATTGAAATCTGGTTGGGAAGAAAA < 41bp 0.45675403998643 0.76794198377147 NA NA prediction 0.53588396754294 Functional Gain - PCF11 ENSG00000165494 CDS Human protein_coding chr11:82877730 chr11:82877729 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18466 0 0 1 0 1 PCF11 chr11:82877756 5'GT 82877756 Upstream 28bp 17390 chr9 136406041 136406041 1 + G T LUAD 136406042 + 136406022 136406062 41 TTTTCTCCACCCACACACTGGACAAGTGTGGCATCTGCCAG TTTTCTCCACCCACACACTTGACAAGTGTGGCATCTGCCAG < 41bp 0.424280505990442 0.767924372027123 NA NA prediction 0.535848744054246 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136406042 chr9:136406041 synonymous SNV . 0 20 hm7G_associated_SNPs_18467 0 0 0 0 2 ADAMTSL2 chr9:136406000 3'AG 136406000 Downstream 42bp 17391 chr9 136406041 136406041 1 + G T LUAD 136406042 + 136406022 136406062 41 TTTTCTCCACCCACACACTGGACAAGTGTGGCATCTGCCAG TTTTCTCCACCCACACACTTGACAAGTGTGGCATCTGCCAG < 41bp 0.424280505990442 0.767924372027123 NA NA prediction 0.535848744054246 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136406042 chr9:136406041 synonymous SNV . 0 20 hm7G_associated_SNPs_18467 0 0 0 0 2 ADAMTSL2 chr9:136406123 5'GT 136406123 Upstream 83bp 17392 chr7 128478662 128478662 1 + G T THCA 128478663 + 128478643 128478683 41 TCTGTTTTCGGCAGGGGCCGGCACTGGCGATGTTGCTGTGG TCTGTTTTCGGCAGGGGCCTGCACTGGCGATGTTGCTGTGG < 41bp 0.592930598558057 0.860824056676076 NA NA prediction 0.535786916236039 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128478663 chr7:128478662 nonsynonymous SNV 0.626 4 20 hm7G_associated_SNPs_18468 0 0 1 0 1 FLNC chr7:128478657 3'AG 128478657 Downstream 6bp 17393 chr6 100056654 100056654 1 + G T LUAD 100056655 + 100056635 100056675 41 GAGCTGGTGGACGAGTCGGGGGGCTCCCCTCTGGAGTGGAT GAGCTGGTGGACGAGTCGGTGGGCTCCCCTCTGGAGTGGAT < 41bp 0.428208241837504 0.767884621779255 NA NA prediction 0.535769243558511 Functional Gain - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056655 chr6:100056654 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18470 0 0 0 0 2 PRDM13 chr6:100056617 3'AG 100056617 Downstream 38bp 17394 chr6 100056654 100056654 1 + G T LUAD 100056655 + 100056635 100056675 41 GAGCTGGTGGACGAGTCGGGGGGCTCCCCTCTGGAGTGGAT GAGCTGGTGGACGAGTCGGTGGGCTCCCCTCTGGAGTGGAT < 41bp 0.428208241837504 0.767884621779255 NA NA prediction 0.535769243558511 Functional Gain - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056655 chr6:100056654 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18470 0 0 0 0 2 PRDM13 chr6:100056748 5'GT 100056748 Upstream 95bp 17395 chr12 49936527 49936527 1 + G T COAD 49936528 + 49936508 49936548 41 TGGCCGGGCACGATCCAAAGGCTTCAATGCCAACCGGCGGC TGGCCGGGCACGATCCAAATGCTTCAATGCCAACCGGCGGC < 41bp 0.606908728242993 0.874780890017485 NA NA prediction 0.535744323548984 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49936528 chr12:49936527 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18471 0 0 0 0 2 KCNH3 chr12:49936489 3'AG 49936489 Downstream 39bp 17396 chr12 49936527 49936527 1 + G T COAD 49936528 + 49936508 49936548 41 TGGCCGGGCACGATCCAAAGGCTTCAATGCCAACCGGCGGC TGGCCGGGCACGATCCAAATGCTTCAATGCCAACCGGCGGC < 41bp 0.606908728242993 0.874780890017485 NA NA prediction 0.535744323548984 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49936528 chr12:49936527 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18471 0 0 0 0 2 KCNH3 chr12:49936622 5'GT 49936622 Upstream 96bp 17397 chr1 156347931 156347931 1 + G T OV 156347932 + 156347912 156347952 41 TGCTCCTTCATCTCCTGGGGGTGAGAGTCTGGGGAGGGATG TGCTCCTTCATCTCCTGGGTGTGAGAGTCTGGGGAGGGATG < 41bp 0.445666020955849 0.767871373323553 NA NA prediction 0.535742746647105 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347932 chr1:156347931 synonymous SNV . 0 20 hm7G_associated_SNPs_18472 0 0 1 0 1 RHBG chr1:156347931 5'GT 156347931 Upstream 1bp 17398 chr19 39111049 39111049 1 + G T GBM 39111050 + 39111030 39111070 41 AGGAAAATGCCTATGATCTGGAAGCCAACCTGGCTGTCCTG AGGAAAATGCCTATGATCTTGAAGCCAACCTGGCTGTCCTG < 41bp 0.598532400049372 0.866402100476316 NA NA prediction 0.535739400853888 Functional Gain - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39111050 chr19:39111049 synonymous SNV . 0 20 hm7G_associated_SNPs_18473 0 0 1 0 2 EIF3K chr19:39110977 3'AG 39110977 Downstream 73bp 17399 chr19 39111049 39111049 1 + G T GBM 39111050 + 39111030 39111070 41 AGGAAAATGCCTATGATCTGGAAGCCAACCTGGCTGTCCTG AGGAAAATGCCTATGATCTTGAAGCCAACCTGGCTGTCCTG < 41bp 0.598532400049372 0.866402100476316 NA NA prediction 0.535739400853888 Functional Gain - EIF3K ENSG00000178982 CDS Human protein_coding chr19:39111050 chr19:39111049 synonymous SNV . 0 20 hm7G_associated_SNPs_18473 0 0 1 0 2 EIF3K chr19:39111075 5'GT 39111075 Upstream 27bp 17400 chr13 32367141 32367141 1 + G T LUSC 32367142 + 32367122 32367162 41 TTATTTTGGAAACTTTTATGGGAAAAATGGAGTATGTTTCC TTATTTTGGAAACTTTTATTGGAAAAATGGAGTATGTTTCC < 41bp 0.468364922012245 0.767866837446309 NA NA prediction 0.535733674892618 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32367142 chr13:32367141 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18474 0 0 0 0 1 RXFP2 chr13:32367225 5'GT 32367225 Upstream 85bp 17401 chr1 110587511 110587511 1 + G T UCEC 110587512 + 110587492 110587532 41 CAGCCGCAGCAAATTTATAGGTTACACTCTAGGCAGGTGAG CAGCCGCAGCAAATTTATATGTTACACTCTAGGCAGGTGAG < 41bp 0.444737444673893 0.767823562839106 NA NA prediction 0.535647125678211 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110587512 chr1:110587511 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18477 0 0 1 0 2 STRIP1 chr1:110587462 3'AG 110587462 Downstream 50bp 17402 chr1 110587511 110587511 1 + G T UCEC 110587512 + 110587492 110587532 41 CAGCCGCAGCAAATTTATAGGTTACACTCTAGGCAGGTGAG CAGCCGCAGCAAATTTATATGTTACACTCTAGGCAGGTGAG < 41bp 0.444737444673893 0.767823562839106 NA NA prediction 0.535647125678211 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110587512 chr1:110587511 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18477 0 0 1 0 2 STRIP1 chr1:110587527 5'GT 110587527 Upstream 17bp 17403 chr1 26759451 26759451 1 + G T UCEC 26759452 + 26759432 26759472 41 GAACTATGTCATGGATCAAGGAAGGAGAGCTGTCACTTTGG GAACTATGTCATGGATCAATGAAGGAGAGCTGTCACTTTGG < 41bp 0.56577333824706 0.833592860084985 NA NA prediction 0.53563904367585 Functional Gain - DHDDS ENSG00000117682 CDS Human protein_coding chr1:26759452 chr1:26759451 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_18478 0 0 1 0 2 DHDDS chr1:26759382 3'AG 26759382 Downstream 70bp 17404 chr1 26759451 26759451 1 + G T UCEC 26759452 + 26759432 26759472 41 GAACTATGTCATGGATCAAGGAAGGAGAGCTGTCACTTTGG GAACTATGTCATGGATCAATGAAGGAGAGCTGTCACTTTGG < 41bp 0.56577333824706 0.833592860084985 NA NA prediction 0.53563904367585 Functional Gain - DHDDS ENSG00000117682 CDS Human protein_coding chr1:26759452 chr1:26759451 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_18478 0 0 1 0 2 DHDDS chr1:26759499 5'GT 26759499 Upstream 49bp 17405 chr19 41281516 41281516 1 + G T LUSC 41281517 + 41281497 41281537 41 TCTCCGGACCTGGTGTCAGGGGTGGTCCTATGCCCAAGCTG TCTCCGGACCTGGTGTCAGTGGTGGTCCTATGCCCAAGCTG < 41bp 0.429560569413839 0.767818326931792 NA NA prediction 0.535636653863584 Functional Gain - MIA ENSG00000261857;ENSG00000268975 CDS Human other chr19:41281517 chr19:41281516 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_18479 0 0 0 0 1 MIA chr19:41281574 5'GT 41281574 Upstream 59bp 17406 chr8 104342230 104342230 1 + G T STAD 104342231 + 104342211 104342251 41 TCCATCTCCAGACTCTCTGGGGAACAGGTCGACGGGAAGGG TCCATCTCCAGACTCTCTGTGGAACAGGTCGACGGGAAGGG < 41bp 0.58507792554734 0.852887189170642 NA NA prediction 0.535618527246605 Functional Gain - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104342231 chr8:104342230 nonsynonymous SNV 0.503 0 20 hm7G_associated_SNPs_18480 0 0 1 0 1 FZD6 chr8:104342293 5'GT 104342293 Upstream 64bp 17407 chr11 64950658 64950658 1 + G T UCEC 64950659 + 64950639 64950679 41 CCCGCACAGACATCTGCCAGGGAGCACTGGGTAGGCCCCCA CCCGCACAGACATCTGCCATGGAGCACTGGGTAGGCCCCCA < 41bp 0.608886152284134 0.876691348207543 NA NA prediction 0.535610391846817 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950659 chr11:64950658 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18481 0 0 1 0 2 CAPN1 chr11:64950599 3'AG 64950599 Downstream 60bp 17408 chr11 64950658 64950658 1 + G T UCEC 64950659 + 64950639 64950679 41 CCCGCACAGACATCTGCCAGGGAGCACTGGGTAGGCCCCCA CCCGCACAGACATCTGCCATGGAGCACTGGGTAGGCCCCCA < 41bp 0.608886152284134 0.876691348207543 NA NA prediction 0.535610391846817 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950659 chr11:64950658 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18481 0 0 1 0 2 CAPN1 chr11:64950668 5'GT 64950668 Upstream 11bp 17409 chr3 129251438 129251438 1 + G T LUAD 129251439 + 129251419 129251459 41 AGAAGGAGGTCACCCGCATGGTCATCATCATGGTCATCGCT AGAAGGAGGTCACCCGCATTGTCATCATCATGGTCATCGCT < 41bp 0.443149282787094 0.767800403537428 NA NA prediction 0.535600807074856 Functional Gain - RHO ENSG00000163914 CDS Human protein_coding chr3:129251439 chr3:129251438 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18482 0 0 0 0 1 RHO chr3:129251376 3'AG 129251376 Downstream 63bp 17410 chrX 46322728 46322728 1 + G T UCEC 46322729 + 46322709 46322749 41 CCCGGTACGGACCTGTGCAGGTGAGGACAGGCCAGGTGAGT CCCGGTACGGACCTGTGCATGTGAGGACAGGCCAGGTGAGT < 41bp 0.459274709261568 0.767794440501964 NA NA prediction 0.535588881003929 Functional Gain - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322729 chrX:46322728 stopgain 0.191 2 20 hm7G_associated_SNPs_18483 0 0 1 0 2 KRBOX4 chrX:46322728 5'GT 46322728 Upstream 1bp 17411 chrX 46322728 46322728 1 + G T UCEC 46322729 + 46322709 46322749 41 CCCGGTACGGACCTGTGCAGGTGAGGACAGGCCAGGTGAGT CCCGGTACGGACCTGTGCATGTGAGGACAGGCCAGGTGAGT < 41bp 0.459274709261568 0.767794440501964 NA NA prediction 0.535588881003929 Functional Gain - KRBOX4 ENSG00000147121 CDS Human protein_coding chrX:46322729 chrX:46322728 stopgain 0.191 2 20 hm7G_associated_SNPs_18483 0 0 1 0 2 KRBOX4 chrX:46322743 5'GT 46322743 Upstream 16bp 17412 chr3 50219808 50219808 1 + G T LUSC 50219809 + 50219789 50219829 41 AGCAGACAGCCATGCGCACGGATCAGTACAACTCCCGGTGG AGCAGACAGCCATGCGCACTGATCAGTACAACTCCCGGTGG < 41bp 0.600328225994506 0.868099579653193 NA NA prediction 0.535542707317374 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50219809 chr3:50219808 synonymous SNV . 0 20 hm7G_associated_SNPs_18487 0 0 0 0 2 SEMA3F chr3:50219717 3'AG 50219717 Downstream 92bp 17413 chr3 50219808 50219808 1 + G T LUSC 50219809 + 50219789 50219829 41 AGCAGACAGCCATGCGCACGGATCAGTACAACTCCCGGTGG AGCAGACAGCCATGCGCACTGATCAGTACAACTCCCGGTGG < 41bp 0.600328225994506 0.868099579653193 NA NA prediction 0.535542707317374 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50219809 chr3:50219808 synonymous SNV . 0 20 hm7G_associated_SNPs_18487 0 0 0 0 2 SEMA3F chr3:50219836 5'GT 50219836 Upstream 29bp 17414 chr9 4833200 4833200 1 + G T OV 4833201 + 4833181 4833221 41 CCTTTGTTGAAACAATTTGGGATTGATGGTGAATCATTTGA CCTTTGTTGAAACAATTTGTGATTGATGGTGAATCATTTGA < 41bp 0.581519227511375 0.849289581119451 NA NA prediction 0.535540707216152 Functional Gain - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4833201 chr9:4833200 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_18488 0 0 1 0 2 RCL1 chr9:4833154 3'AG 4833154 Downstream 47bp 17415 chr9 4833200 4833200 1 + G T OV 4833201 + 4833181 4833221 41 CCTTTGTTGAAACAATTTGGGATTGATGGTGAATCATTTGA CCTTTGTTGAAACAATTTGTGATTGATGGTGAATCATTTGA < 41bp 0.581519227511375 0.849289581119451 NA NA prediction 0.535540707216152 Functional Gain - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4833201 chr9:4833200 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_18488 0 0 1 0 2 RCL1 chr9:4833228 5'GT 4833228 Upstream 29bp 17416 chr2 70502272 70502272 1 + G T LUSC 70502273 + 70502253 70502293 41 TGTTATGAGGGTCAATTATGGCCAAAGCACGGACATCAATG TGTTATGAGGGTCAATTATTGCCAAAGCACGGACATCAATG < 41bp 0.586870525462857 0.854637095623976 NA NA prediction 0.535533140322239 Functional Gain - PCYOX1 ENSG00000116005 CDS Human protein_coding chr2:70502273 chr2:70502272 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_18489 0 0 1 0 1 PCYOX1 chr2:70502302 5'GT 70502302 Upstream 31bp 17417 chr3 11059622 11059622 1 + G T LUAD 11059623 + 11059603 11059643 41 GGCCAGTACACCTCCATCGGGGGGCTAGGGGTATGGAAGCT GGCCAGTACACCTCCATCGTGGGGCTAGGGGTATGGAAGCT < 41bp 0.598783112150116 0.86653632937184 NA NA prediction 0.535506434443447 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11059623 chr3:11059622 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_18491 0 0 0 0 1 SLC6A1 chr3:11059529 3'AG 11059529 Downstream 94bp 17418 chr7 87370833 87370833 1 + G T LUSC 87370834 + 87370814 87370854 41 GTTTCTGCCTAAAGGGAGAGGGGCTGGATGGCAGTTTTCCT GTTTCTGCCTAAAGGGAGATGGGCTGGATGGCAGTTTTCCT < 41bp 0.455543155812493 0.767738603935587 NA NA prediction 0.535477207871175 Functional Gain - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87370834 chr7:87370833 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18494 0 0 0 0 2 RUNDC3B chr7:87370815 3'AG 87370815 Downstream 19bp 17419 chr7 87370833 87370833 1 + G T LUSC 87370834 + 87370814 87370854 41 GTTTCTGCCTAAAGGGAGAGGGGCTGGATGGCAGTTTTCCT GTTTCTGCCTAAAGGGAGATGGGCTGGATGGCAGTTTTCCT < 41bp 0.455543155812493 0.767738603935587 NA NA prediction 0.535477207871175 Functional Gain - RUNDC3B ENSG00000105784 CDS Human protein_coding chr7:87370834 chr7:87370833 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18494 0 0 0 0 2 RUNDC3B chr7:87370895 5'GT 87370895 Upstream 63bp 17420 chr1 207307875 207307875 1 + G T STAD 207307876 + 207307856 207307896 41 TCATGTCATGAGACCAGTAGGTTTTCAGCTATATGCCAAGG TCATGTCATGAGACCAGTATGTTTTCAGCTATATGCCAAGG < 41bp 0.459979271492767 0.767734188653983 NA NA prediction 0.535468377307967 Functional Gain - C4BPA ENSG00000123838 CDS Human protein_coding chr1:207307876 chr1:207307875 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_18496 0 0 0 0 1 C4BPA chr1:207307937 5'GT 207307937 Upstream 63bp 17421 chr5 115202451 115202451 1 + G T COAD 115202452 + 115202432 115202472 41 TGTTTGTAATTTCCTAGAAGGAGGATTGTAAGTAAAGCATT TGTTTGTAATTTCCTAGAATGAGGATTGTAAGTAAAGCATT < 41bp 0.549886630043323 0.817608415385972 NA NA prediction 0.535443570685297 Functional Gain - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115202452 chr5:115202451 stopgain 1.000 1 20 hm7G_associated_SNPs_18499 0 0 1 0 1 AP3S1 chr5:115202458 5'GT 115202458 Upstream 8bp 17422 chr10 82271934 82271934 1 + G T HNSC 82271935 + 82271915 82271955 41 GCATATGGCCCTGAAGACTGGGACCTCAACGTCTACTTCAA GCATATGGCCCTGAAGACTTGGACCTCAACGTCTACTTCAA < 41bp 0.604834419931643 0.872532402036234 NA NA prediction 0.535395964209181 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82271935 chr10:82271934 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18500 0 0 1 0 2 TSPAN14 chr10:82271900 3'AG 82271900 Downstream 35bp 17423 chr10 82271934 82271934 1 + G T HNSC 82271935 + 82271915 82271955 41 GCATATGGCCCTGAAGACTGGGACCTCAACGTCTACTTCAA GCATATGGCCCTGAAGACTTGGACCTCAACGTCTACTTCAA < 41bp 0.604834419931643 0.872532402036234 NA NA prediction 0.535395964209181 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82271935 chr10:82271934 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18500 0 0 1 0 2 TSPAN14 chr10:82272025 5'GT 82272025 Upstream 92bp 17424 chr20 43034787 43034787 1 + G T LUAD 43034788 + 43034768 43034808 41 CTGCGGGGACCGGGCCACGGGCAAACACTACGGTGCCTCGA CTGCGGGGACCGGGCCACGTGCAAACACTACGGTGCCTCGA < 41bp 0.608175223117878 0.875863808524974 NA NA prediction 0.535377170814192 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034788 chr20:43034787 nonsynonymous SNV 0.667 5 20 hm7G_associated_SNPs_18501 0 0 1 0 2 HNF4A chr20:43034698 3'AG 43034698 Downstream 90bp 17425 chr20 43034787 43034787 1 + G T LUAD 43034788 + 43034768 43034808 41 CTGCGGGGACCGGGCCACGGGCAAACACTACGGTGCCTCGA CTGCGGGGACCGGGCCACGTGCAAACACTACGGTGCCTCGA < 41bp 0.608175223117878 0.875863808524974 NA NA prediction 0.535377170814192 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034788 chr20:43034787 nonsynonymous SNV 0.667 5 20 hm7G_associated_SNPs_18501 0 0 1 0 2 HNF4A chr20:43034872 5'GT 43034872 Upstream 86bp 17426 chr2 61412663 61412663 1 + G T SKCM 61412664 + 61412644 61412684 41 CCTCATCTCCAGTGGCACTGGGTGTAAGGATTCCCACTGTG CCTCATCTCCAGTGGCACTTGGTGTAAGGATTCCCACTGTG < 41bp 0.60387203562449 0.87155788461994 NA NA prediction 0.535371697990899 Functional Gain - AHSA2 ENSG00000173209 CDS Human protein_coding chr2:61412664 chr2:61412663 synonymous SNV . 0 20 hm7G_associated_SNPs_18502 0 0 1 1 2 AHSA2 chr2:61412637 3'AG 61412637 Downstream 27bp 17427 chr2 61412663 61412663 1 + G T SKCM 61412664 + 61412644 61412684 41 CCTCATCTCCAGTGGCACTGGGTGTAAGGATTCCCACTGTG CCTCATCTCCAGTGGCACTTGGTGTAAGGATTCCCACTGTG < 41bp 0.60387203562449 0.87155788461994 NA NA prediction 0.535371697990899 Functional Gain - AHSA2 ENSG00000173209 CDS Human protein_coding chr2:61412664 chr2:61412663 synonymous SNV . 0 20 hm7G_associated_SNPs_18502 0 0 1 1 2 AHSA2 chr2:61412753 5'GT 61412753 Upstream 91bp 17428 chr19 41235261 41235261 1 + G T LUSC 41235262 + 41235242 41235282 41 GCCAGACCTTCAACCAGATGGAAGACCTCCTGGCTGACTTT GCCAGACCTTCAACCAGATTGAAGACCTCCTGGCTGACTTT < 41bp 0.424663680081961 0.767677180252662 NA NA prediction 0.535354360505324 Functional Gain - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41235262 chr19:41235261 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18504 0 0 0 0 1 ITPKC chr19:41235320 5'GT 41235320 Upstream 60bp 17429 chr12 109689891 109689891 1 + G T COAD 109689892 + 109689872 109689912 41 ATTGGGGCCTACTTGGTGAGGCTGGGCCAGCGAGTGATCCA ATTGGGGCCTACTTGGTGATGCTGGGCCAGCGAGTGATCCA < 41bp 0.434119837653367 0.767676245483669 NA NA prediction 0.535352490967338 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109689892 chr12:109689891 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18505 0 0 0 0 2 ACACB chr12:109689851 3'AG 109689851 Downstream 41bp 17430 chr12 109689891 109689891 1 + G T COAD 109689892 + 109689872 109689912 41 ATTGGGGCCTACTTGGTGAGGCTGGGCCAGCGAGTGATCCA ATTGGGGCCTACTTGGTGATGCTGGGCCAGCGAGTGATCCA < 41bp 0.434119837653367 0.767676245483669 NA NA prediction 0.535352490967338 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109689892 chr12:109689891 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18505 0 0 0 0 2 ACACB chr12:109689961 5'GT 109689961 Upstream 71bp 17431 chr11 63279292 63279292 1 + G T OV 63279293 + 63279273 63279313 41 TCATCATAGTACGGGGACTGGTCTTGCAAGAGCCGAAGCAG TCATCATAGTACGGGGACTTGTCTTGCAAGAGCCGAAGCAG < 41bp 0.594908495239378 0.862579958305888 NA NA prediction 0.535342926133018 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63279293 chr11:63279292 synonymous SNV . 0 20 hm7G_associated_SNPs_18507 0 0 0 0 2 LGALS12 chr11:63279224 3'AG 63279224 Downstream 69bp 17432 chr11 63279292 63279292 1 + G T OV 63279293 + 63279273 63279313 41 TCATCATAGTACGGGGACTGGTCTTGCAAGAGCCGAAGCAG TCATCATAGTACGGGGACTTGTCTTGCAAGAGCCGAAGCAG < 41bp 0.594908495239378 0.862579958305888 NA NA prediction 0.535342926133018 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63279293 chr11:63279292 synonymous SNV . 0 20 hm7G_associated_SNPs_18507 0 0 0 0 2 LGALS12 chr11:63279312 5'GT 63279312 Upstream 21bp 17433 chr1 158224934 158224934 1 + G T LIHC 158224935 + 158224915 158224955 41 TCCTTTTACAACCATTCCTGGAAACAAAATCTGGTCTCAGG TCCTTTTACAACCATTCCTTGAAACAAAATCTGGTCTCAGG < 41bp 0.454546359978108 0.767653616823149 NA NA prediction 0.535307233646299 Functional Gain - CD1A ENSG00000158477 CDS Human protein_coding chr1:158224935 chr1:158224934 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_18509 0 0 0 0 1 CD1A chr1:158224874 3'AG 158224874 Downstream 61bp 17434 chr10 101556893 101556893 1 + G T GBM 101556894 + 101556874 101556914 41 AGCGTCCTCTGACACTCGAGGATGTCTGGGAAGTTGATGAA AGCGTCCTCTGACACTCGATGATGTCTGGGAAGTTGATGAA < 41bp 0.589155752448968 0.856800479468397 NA NA prediction 0.535289454038857 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101556894 chr10:101556893 nonsynonymous SNV 0.119 1 20 hm7G_associated_SNPs_18510 0 0 1 0 1 ABCC2 chr10:101556854 3'AG 101556854 Downstream 40bp 17435 chr9 109701363 109701363 1 + G T LUAD 109701364 + 109701344 109701384 41 CCTCCCAAAAAGCTACCCCGGCTGAAGAAGTGGAAGACTCC CCTCCCAAAAAGCTACCCCTGCTGAAGAAGTGGAAGACTCC < 41bp 0.596874463712014 0.864513686202862 NA NA prediction 0.535278444981695 Functional Gain - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109701364 chr9:109701363 synonymous SNV . 0 20 hm7G_associated_SNPs_18512 0 0 0 0 1 ZNF462 chr9:109701388 5'GT 109701388 Upstream 26bp 17436 chr12 8245520 8245520 1 + G T UCEC 8245521 + 8245501 8245541 41 CCCAGGACTGCAAGGGGTGGGGGTCTGAGCTTACTCCCACC CCCAGGACTGCAAGGGGTGTGGGTCTGAGCTTACTCCCACC < 41bp 0.597644743986939 0.865275380852133 NA NA prediction 0.535261273730389 Functional Gain - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8245521 chr12:8245520 nonsynonymous SNV 0.607 3 20 hm7G_associated_SNPs_18515 0 0 1 0 1 NECAP1 chr12:8245468 3'AG 8245468 Downstream 53bp 17437 chr4 1348524 1348524 1 + G T UCEC 1348525 + 1348505 1348545 41 CTGTGTGCTTCTCCCCAGAGGGCCTGAAGGTGCAGGAGAAC CTGTGTGCTTCTCCCCAGATGGCCTGAAGGTGCAGGAGAAC < 41bp 0.423420319334644 0.767616716408213 NA NA prediction 0.535233432816425 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1348525 chr4:1348524 nonsynonymous SNV 0.077 0 20 hm7G_associated_SNPs_18516 0 0 1 0 1 UVSSA chr4:1348523 3'AG 1348523 Downstream 2bp 17438 chr11 46389218 46389218 1 + G T STAD 46389219 + 46389199 46389239 41 TAGGAGTCAGCGACATATGGGGAGCACATCTGGTTCGAGAC TAGGAGTCAGCGACATATGTGGAGCACATCTGGTTCGAGAC < 41bp 0.431189273727331 0.767604592882572 NA NA prediction 0.535209185765144 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46389219 chr11:46389218 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18522 0 0 0 0 3 DGKZ chr11:46389202 3'AG 46389202 Downstream 17bp 17439 chr11 46389218 46389218 1 + G T STAD 46389219 + 46389199 46389239 41 TAGGAGTCAGCGACATATGGGGAGCACATCTGGTTCGAGAC TAGGAGTCAGCGACATATGTGGAGCACATCTGGTTCGAGAC < 41bp 0.431189273727331 0.767604592882572 NA NA prediction 0.535209185765144 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46389219 chr11:46389218 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18522 0 0 0 0 3 DGKZ chr11:46389205 3'AG 46389205 Downstream 14bp 17440 chr11 46389218 46389218 1 + G T STAD 46389219 + 46389199 46389239 41 TAGGAGTCAGCGACATATGGGGAGCACATCTGGTTCGAGAC TAGGAGTCAGCGACATATGTGGAGCACATCTGGTTCGAGAC < 41bp 0.431189273727331 0.767604592882572 NA NA prediction 0.535209185765144 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46389219 chr11:46389218 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18522 0 0 0 0 3 DGKZ chr11:46389297 5'GT 46389297 Upstream 80bp 17441 chr19 45561023 45561023 1 + G T LUSC 45561024 + 45561004 45561044 41 TCAGGCTGGCAGAGAAGAAGGCTTCCATCGGTTATACCTAC TCAGGCTGGCAGAGAAGAATGCTTCCATCGGTTATACCTAC < 41bp 0.604695566776645 0.872275109999578 NA NA prediction 0.535159086445866 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45561024 chr19:45561023 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_18524 0 0 1 0 1 CLASRP chr19:45561008 3'AG 45561008 Downstream 16bp 17442 chr6 80750370 80750370 1 + G T LUAD 80750371 + 80750351 80750391 41 AGAAATGAAATATGTTCTGGGCCAACTTGTTGGTCTGAATT AGAAATGAAATATGTTCTGTGCCAACTTGTTGGTCTGAATT < 41bp 0.574990800221899 0.842568750132839 NA NA prediction 0.535155899821881 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80750371 chr6:80750370 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_18525 0 0 1 0 2 TTK chr6:80750323 3'AG 80750323 Downstream 48bp 17443 chr6 80750370 80750370 1 + G T LUAD 80750371 + 80750351 80750391 41 AGAAATGAAATATGTTCTGGGCCAACTTGTTGGTCTGAATT AGAAATGAAATATGTTCTGTGCCAACTTGTTGGTCTGAATT < 41bp 0.574990800221899 0.842568750132839 NA NA prediction 0.535155899821881 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80750371 chr6:80750370 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_18525 0 0 1 0 2 TTK chr6:80750420 5'GT 80750420 Upstream 51bp 17444 chr12 58014864 58014864 1 + G T ESCA 58014865 + 58014845 58014885 41 GGCCGTGGCCTTCGGGAGCGGGGCGTTGATGGTGAGGGAGG GGCCGTGGCCTTCGGGAGCTGGGCGTTGATGGTGAGGGAGG < 41bp 0.594558326666792 0.862124730065336 NA NA prediction 0.535132806797088 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58014865 chr12:58014864 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_18527 0 0 0 0 1 SLC26A10 chr12:58014875 5'GT 58014875 Upstream 12bp 17445 chr3 180322670 180322670 1 + G T SARC 180322671 + 180322651 180322691 41 AGCTAAATAGCAATTCTTTGGAGTCCTATGAAAATGTCATG AGCTAAATAGCAATTCTTTTGAGTCCTATGAAAATGTCATG < 41bp 0.455930309260938 0.767553590340462 NA NA prediction 0.535107180680924 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180322671 chr3:180322670 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_18529 0 0 1 0 1 TTC14 chr3:180322640 3'AG 180322640 Downstream 31bp 17446 chr16 20818335 20818335 1 + G T UCEC 20818336 + 20818316 20818356 41 AGGTCAGGGAAAGCAGGCAGGCCCCAAATAAGCTGGTCGGG AGGTCAGGGAAAGCAGGCATGCCCCAAATAAGCTGGTCGGG < 41bp 0.597630529382281 0.865182469600908 NA NA prediction 0.535103880437254 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20818336 chr16:20818335 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_18530 0 0 0 0 2 REXO5 chr16:20818274 3'AG 20818274 Downstream 62bp 17447 chr16 20818335 20818335 1 + G T UCEC 20818336 + 20818316 20818356 41 AGGTCAGGGAAAGCAGGCAGGCCCCAAATAAGCTGGTCGGG AGGTCAGGGAAAGCAGGCATGCCCCAAATAAGCTGGTCGGG < 41bp 0.597630529382281 0.865182469600908 NA NA prediction 0.535103880437254 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20818336 chr16:20818335 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_18530 0 0 0 0 2 REXO5 chr16:20818413 5'GT 20818413 Upstream 79bp 17448 chr4 120189470 120189470 1 + G T CESC 120189471 + 120189451 120189491 41 AGATAATTTAAAAGAAAATGGATTTGGTGATCAGGCAAAGC AGATAATTTAAAAGAAAATTGATTTGGTGATCAGGCAAAGC < 41bp 0.575294324444222 0.842840655783737 NA NA prediction 0.535092662679029 Functional Gain - USP53 ENSG00000145390 CDS Human protein_coding chr4:120189471 chr4:120189470 stopgain 1.000 0 20 hm7G_associated_SNPs_18531 0 0 1 0 1 USP53 chr4:120189423 3'AG 120189423 Downstream 48bp 17449 chr11 117978589 117978589 1 + G T UCEC 117978590 + 117978570 117978610 41 TCGCATGCGGAACTCAAGTGGGTAAGTGAGGGGACACCTTC TCGCATGCGGAACTCAAGTTGGTAAGTGAGGGGACACCTTC < 41bp 0.590683544889067 0.858205573068452 NA NA prediction 0.53504405635877 Functional Gain - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117978590 chr11:117978589 nonsynonymous SNV 0.470 3 20 hm7G_associated_SNPs_18535 0 0 0 0 2 TMPRSS4 chr11:117978504 3'AG 117978504 Downstream 86bp 17450 chr11 117978589 117978589 1 + G T UCEC 117978590 + 117978570 117978610 41 TCGCATGCGGAACTCAAGTGGGTAAGTGAGGGGACACCTTC TCGCATGCGGAACTCAAGTTGGTAAGTGAGGGGACACCTTC < 41bp 0.590683544889067 0.858205573068452 NA NA prediction 0.53504405635877 Functional Gain - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117978590 chr11:117978589 nonsynonymous SNV 0.470 3 20 hm7G_associated_SNPs_18535 0 0 0 0 2 TMPRSS4 chr11:117978590 5'GT 117978590 Upstream 2bp 17451 chr8 27312121 27312121 1 + G T CESC 27312122 + 27312102 27312142 41 TCCTTGCCGTCATCTTCACGGACAGAGGTGAGCGTCCCATT TCCTTGCCGTCATCTTCACTGACAGAGGTGAGCGTCCCATT < 41bp 0.437137623452853 0.767503810943245 NA NA prediction 0.53500762188649 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27312122 chr8:27312121 nonsynonymous SNV 0.614 1 20 hm7G_associated_SNPs_18537 0 0 1 0 2 PTK2B chr8:27312048 3'AG 27312048 Downstream 74bp 17452 chr8 27312121 27312121 1 + G T CESC 27312122 + 27312102 27312142 41 TCCTTGCCGTCATCTTCACGGACAGAGGTGAGCGTCCCATT TCCTTGCCGTCATCTTCACTGACAGAGGTGAGCGTCCCATT < 41bp 0.437137623452853 0.767503810943245 NA NA prediction 0.53500762188649 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27312122 chr8:27312121 nonsynonymous SNV 0.614 1 20 hm7G_associated_SNPs_18537 0 0 1 0 2 PTK2B chr8:27312128 5'GT 27312128 Upstream 8bp 17453 chr5 141353195 141353195 1 + G T SARC 141353196 + 141353176 141353216 41 CTCAGGAGGATGAATTGCTGGCCCTGGCAAGTATTTACGAT CTCAGGAGGATGAATTGCTTGCCCTGGCAAGTATTTACGAT < 41bp 0.587073835603627 0.854569598738159 NA NA prediction 0.534991526269065 Functional Gain - RNF14 ENSG00000013561 CDS Human antisense chr5:141353196 chr5:141353195 synonymous SNV . 0 20 hm7G_associated_SNPs_18539 0 0 1 0 1 RNF14 chr5:141353148 3'AG 141353148 Downstream 48bp 17454 chr2 75101398 75101398 1 + G T STAD 75101399 + 75101379 75101419 41 CCTTGTTTTGGCAGGCACGGGCAGCAACGCCTGCTACATGG CCTTGTTTTGGCAGGCACGTGCAGCAACGCCTGCTACATGG < 41bp 0.430004649458355 0.767478039279354 NA NA prediction 0.534956078558707 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75101399 chr2:75101398 nonsynonymous SNV 0.597 4 20 hm7G_associated_SNPs_18541 0 0 1 0 1 HK2 chr2:75101393 3'AG 75101393 Downstream 6bp 17455 chr10 70958268 70958268 1 + G T LUSC 70958269 + 70958249 70958289 41 GTCGGCAGATTGAAATTCGGGGATTAGAATCAGCTGTTATA GTCGGCAGATTGAAATTCGTGGATTAGAATCAGCTGTTATA < 41bp 0.445815660932676 0.767473083776811 NA NA prediction 0.534946167553623 Functional Gain - SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70958269 chr10:70958268 synonymous SNV . 0 20 hm7G_associated_SNPs_18543 0 0 1 0 1 SUPV3L1 chr10:70958308 5'GT 70958308 Upstream 41bp 17456 chr8 22020107 22020107 1 + G T UCEC 22020108 + 22020088 22020128 41 ACTACTCCGCAGCTCCCCGGGGCCGATTTGGCATTCCCTGC ACTACTCCGCAGCTCCCCGTGGCCGATTTGGCATTCCCTGC < 41bp 0.417968588023973 0.767469100638069 NA NA prediction 0.534938201276137 Functional Gain - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020108 chr8:22020107 synonymous SNV . 0 20 hm7G_associated_SNPs_18544 0 0 0 0 1 SFTPC chr8:22020087 3'AG 22020087 Downstream 21bp 17457 chr12 126128656 126128656 1 + G T PAAD 126128657 + 126128637 126128677 41 GATTCCATTTTTGTGAATGGGAAGGAAATGAAGAGCAAAGT GATTCCATTTTTGTGAATGTGAAGGAAATGAAGAGCAAAGT < 41bp 0.457371827760614 0.767443918755312 NA NA prediction 0.534887837510625 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126128657 chr12:126128656 nonsynonymous SNV 0.912 3 20 hm7G_associated_SNPs_18546 0 0 0 0 1 TMEM132B chr12:126128622 3'AG 126128622 Downstream 35bp 17458 chr10 118084818 118084818 1 + G T LUSC 118084819 + 118084799 118084839 41 TTAATTTTTATTACAGTAAGGTCGGAAATAACCAGATGTCG TTAATTTTTATTACAGTAATGTCGGAAATAACCAGATGTCG < 41bp 0.487273551451835 0.767442564634836 NA NA prediction 0.534885129269672 Functional Gain - CCDC172 ENSG00000182645 CDS Human protein_coding chr10:118084819 chr10:118084818 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_18547 0 0 0 0 2 CCDC172 chr10:118084815 3'AG 118084815 Downstream 4bp 17459 chr10 118084818 118084818 1 + G T LUSC 118084819 + 118084799 118084839 41 TTAATTTTTATTACAGTAAGGTCGGAAATAACCAGATGTCG TTAATTTTTATTACAGTAATGTCGGAAATAACCAGATGTCG < 41bp 0.487273551451835 0.767442564634836 NA NA prediction 0.534885129269672 Functional Gain - CCDC172 ENSG00000182645 CDS Human protein_coding chr10:118084819 chr10:118084818 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_18547 0 0 0 0 2 CCDC172 chr10:118084900 5'GT 118084900 Upstream 83bp 17460 chr3 105253592 105253592 1 + G T UCEC 105253593 + 105253573 105253613 41 TGGAGTACAAGACAACCAAGGCTGACATACAAATGCCATTC TGGAGTACAAGACAACCAATGCTGACATACAAATGCCATTC < 41bp 0.451572028010167 0.767436564637077 NA NA prediction 0.534873129274154 Functional Gain - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105253593 chr3:105253592 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_18549 0 0 1 0 2 ALCAM chr3:105253507 3'AG 105253507 Downstream 86bp 17461 chr3 105253592 105253592 1 + G T UCEC 105253593 + 105253573 105253613 41 TGGAGTACAAGACAACCAAGGCTGACATACAAATGCCATTC TGGAGTACAAGACAACCAATGCTGACATACAAATGCCATTC < 41bp 0.451572028010167 0.767436564637077 NA NA prediction 0.534873129274154 Functional Gain - ALCAM ENSG00000170017 CDS Human protein_coding chr3:105253593 chr3:105253592 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_18549 0 0 1 0 2 ALCAM chr3:105253689 5'GT 105253689 Upstream 98bp 17462 chr11 64893239 64893239 1 + G T OV 64893240 + 64893220 64893260 41 ATTTTCTGAGCCCGCTGCTGGGGAAGACACCTGTCACCCAG ATTTTCTGAGCCCGCTGCTTGGGAAGACACCTGTCACCCAG < 41bp 0.579727281540143 0.847158100396703 NA NA prediction 0.534861637713121 Functional Gain - MRPL49 ENSG00000149792 CDS Human protein_coding chr11:64893240 chr11:64893239 synonymous SNV . 0 20 hm7G_associated_SNPs_18550 0 0 1 0 1 MRPL49 chr11:64893198 3'AG 64893198 Downstream 42bp 17463 chr2 112779060 112779060 1 + G T UCEC 112779061 + 112779041 112779081 41 CTCTAAGAAGATTTACAGTGGCGATTATTACCGCCAAGGCC CTCTAAGAAGATTTACAGTTGCGATTATTACCGCCAAGGCC < 41bp 0.432874771310278 0.767426041583872 NA NA prediction 0.534852083167743 Functional Gain - MERTK ENSG00000153208 CDS Human protein_coding chr2:112779061 chr2:112779060 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_18551 0 0 1 0 2 MERTK chr2:112778999 3'AG 112778999 Downstream 62bp 17464 chr2 112779060 112779060 1 + G T UCEC 112779061 + 112779041 112779081 41 CTCTAAGAAGATTTACAGTGGCGATTATTACCGCCAAGGCC CTCTAAGAAGATTTACAGTTGCGATTATTACCGCCAAGGCC < 41bp 0.432874771310278 0.767426041583872 NA NA prediction 0.534852083167743 Functional Gain - MERTK ENSG00000153208 CDS Human protein_coding chr2:112779061 chr2:112779060 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_18551 0 0 1 0 2 MERTK chr2:112779158 5'GT 112779158 Upstream 99bp 17465 chr1 27627882 27627882 1 + G T LUAD 27627883 + 27627863 27627903 41 AAGGGAAATTTCCGGAGCAGGCCCACAGCAGCGCTTGTGAT AAGGGAAATTTCCGGAGCATGCCCACAGCAGCGCTTGTGAT < 41bp 0.595332194774933 0.862756762582726 NA NA prediction 0.534849135615587 Functional Gain - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27627883 chr1:27627882 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_18552 0 0 1 0 1 WDTC1 chr1:27627952 5'GT 27627952 Upstream 71bp 17466 chr11 20483602 20483602 1 + G T COAD 20483603 + 20483583 20483623 41 CTGATAGAATTGCTTTTTGGGATGATGTCTATGGCTTCAAG CTGATAGAATTGCTTTTTGTGATGATGTCTATGGCTTCAAG < 41bp 0.453337034922576 0.767413563341949 NA NA prediction 0.534827126683897 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20483603 chr11:20483602 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_18553 0 0 1 0 1 PRMT3 chr11:20483526 3'AG 20483526 Downstream 77bp 17467 chr21 38868552 38868552 1 + G T UCEC 38868553 + 38868533 38868573 41 CTTAAAGAAGACCAAAGATGGAAAACGGGTAAAATAAGGAT CTTAAAGAAGACCAAAGATTGAAAACGGGTAAAATAAGGAT < 41bp 0.571293263193781 0.838694456586661 NA NA prediction 0.53480238678576 Functional Gain - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38868553 chr21:38868552 stopgain 1.000 1 20 hm7G_associated_SNPs_18556 0 0 1 0 1 DYRK1A chr21:38868560 5'GT 38868560 Upstream 9bp 17468 chr3 51733580 51733580 1 + G T STAD 51733581 + 51733561 51733601 41 AGGCCATTGACACCCAGGTGGATGGCACAGGTACAGAAGGT AGGCCATTGACACCCAGGTTGATGGCACAGGTACAGAAGGT < 41bp 0.592532431186571 0.859930331442158 NA NA prediction 0.534795800511174 Functional Gain - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51733581 chr3:51733580 synonymous SNV . 0 20 hm7G_associated_SNPs_18557 0 0 1 0 1 TEX264 chr3:51733590 5'GT 51733590 Upstream 11bp 17469 chr10 134941918 134941918 1 + G T LUAD 134941919 + 134941899 134941939 41 CACCTGTGTGTACTTCCTGGGCACCTACGTGCAGCTGCGGC CACCTGTGTGTACTTCCTGTGCACCTACGTGCAGCTGCGGC < 41bp 0.573486253483591 0.840883903811693 NA NA prediction 0.534795300656204 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134941919 chr10:134941918 nonsynonymous SNV 0.844 0 20 hm7G_associated_SNPs_18558 0 0 0 0 1 ADGRA1 chr10:134941833 3'AG 134941833 Downstream 86bp 17470 chr1 155255754 155255754 1 + G T PRAD 155255755 + 155255735 155255775 41 CCGATGGATCCTACTTTGGGGGTCAGCAGGCCTCAGGGAGG CCGATGGATCCTACTTTGGTGGTCAGCAGGCCTCAGGGAGG < 41bp 0.596883108644747 0.864278067295489 NA NA prediction 0.534789917301484 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255755 chr1:155255754 synonymous SNV . 0 20 hm7G_associated_SNPs_18559 0 0 0 0 1 HCN3 chr1:155255755 5'GT 155255755 Upstream 2bp 17471 chr9 117044584 117044584 1 + G T UCEC 117044585 + 117044565 117044605 41 AGGAAAATCAGGGAAGCAAGGCGAGAAGGGCCGCACTGGAG AGGAAAATCAGGGAAGCAATGCGAGAAGGGCCGCACTGGAG < 41bp 0.595888037268273 0.863275678579483 NA NA prediction 0.534775282622421 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117044585 chr9:117044584 nonsynonymous SNV 0.965 4 20 hm7G_associated_SNPs_18560 0 0 1 0 1 COL27A1 chr9:117044610 5'GT 117044610 Upstream 27bp 17472 chr17 48431783 48431783 1 + G T UCEC 48431784 + 48431764 48431804 41 CTCAGGGAAGATGAGCCCCGGCATCCAGTGGGATGAGAGCC CTCAGGGAAGATGAGCCCCTGCATCCAGTGGGATGAGAGCC < 41bp 0.600533830652698 0.867912775172995 NA NA prediction 0.534757889040595 Functional Gain - XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48431784 chr17:48431783 nonsynonymous SNV 0.812 0 20 hm7G_associated_SNPs_18562 0 0 1 0 1 XYLT2 chr17:48431769 3'AG 48431769 Downstream 15bp 17473 chr9 136256568 136256568 1 + G T STAD 136256569 + 136256549 136256589 41 AATGGAATATTCGTGCGGAGGAAGGTGGCAGGGGCTCCCCC AATGGAATATTCGTGCGGATGAAGGTGGCAGGGGCTCCCCC < 41bp 0.455400933545696 0.767336159008716 NA NA prediction 0.534672318017432 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136256569 chr9:136256568 nonsynonymous SNV 0.667 0 20 hm7G_associated_SNPs_18564 0 0 0 0 1 STKLD1 chr9:136256572 5'GT 136256572 Upstream 5bp 17474 chr3 57902789 57902789 1 + G T COAD 57902790 + 57902770 57902810 41 AGGCAGAAAACCAAGCAAAGGATGTGCAGAAAGAGGTAAAG AGGCAGAAAACCAAGCAAATGATGTGCAGAAAGAGGTAAAG < 41bp 0.559537327782463 0.826855642892603 NA NA prediction 0.53463663022028 Functional Gain - SLMAP ENSG00000163681 CDS Human protein_coding chr3:57902790 chr3:57902789 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18565 0 0 1 0 1 SLMAP chr3:57902804 5'GT 57902804 Upstream 16bp 17475 chr3 52825615 52825615 1 + G T LUAD 52825616 + 52825596 52825636 41 AGCCAGATGCCACGATGGTGGTGAGGAACCGCCGGCTCACG AGCCAGATGCCACGATGGTTGTGAGGAACCGCCGGCTCACG < 41bp 0.440929017879526 0.767317582933338 NA NA prediction 0.534635165866676 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825616 chr3:52825615 synonymous SNV . 0 20 hm7G_associated_SNPs_18566 0 0 1 0 3 ITIH1 chr3:52825533 3'AG 52825533 Downstream 83bp 17476 chr3 52825615 52825615 1 + G T LUAD 52825616 + 52825596 52825636 41 AGCCAGATGCCACGATGGTGGTGAGGAACCGCCGGCTCACG AGCCAGATGCCACGATGGTTGTGAGGAACCGCCGGCTCACG < 41bp 0.440929017879526 0.767317582933338 NA NA prediction 0.534635165866676 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825616 chr3:52825615 synonymous SNV . 0 20 hm7G_associated_SNPs_18566 0 0 1 0 3 ITIH1 chr3:52825615 5'GT 52825615 Upstream 1bp 17477 chr3 52825615 52825615 1 + G T LUAD 52825616 + 52825596 52825636 41 AGCCAGATGCCACGATGGTGGTGAGGAACCGCCGGCTCACG AGCCAGATGCCACGATGGTTGTGAGGAACCGCCGGCTCACG < 41bp 0.440929017879526 0.767317582933338 NA NA prediction 0.534635165866676 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825616 chr3:52825615 synonymous SNV . 0 20 hm7G_associated_SNPs_18566 0 0 1 0 3 ITIH1 chr3:52825644 5'GT 52825644 Upstream 30bp 17478 chr10 91498777 91498777 1 + G T PAAD 91498778 + 91498758 91498798 41 CTGAAAGCAGATCTTCAGAGGAAGGAAGAAGATTATGCTGA CTGAAAGCAGATCTTCAGATGAAGGAAGAAGATTATGCTGA < 41bp 0.458065706307558 0.767309262983826 NA NA prediction 0.534618525967652 Functional Gain - KIF20B ENSG00000138182 CDS Human protein_coding chr10:91498778 chr10:91498777 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18569 0 0 1 0 2 KIF20B chr10:91498715 3'AG 91498715 Downstream 63bp 17479 chr10 91498777 91498777 1 + G T PAAD 91498778 + 91498758 91498798 41 CTGAAAGCAGATCTTCAGAGGAAGGAAGAAGATTATGCTGA CTGAAAGCAGATCTTCAGATGAAGGAAGAAGATTATGCTGA < 41bp 0.458065706307558 0.767309262983826 NA NA prediction 0.534618525967652 Functional Gain - KIF20B ENSG00000138182 CDS Human protein_coding chr10:91498778 chr10:91498777 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18569 0 0 1 0 2 KIF20B chr10:91498853 5'GT 91498853 Upstream 77bp 17480 chr19 15648690 15648690 1 + G T LUAD 15648691 + 15648671 15648711 41 TCTCTCTTCCAGGCTAAATGGCGGCATCTGGCAGAGGGCTC TCTCTCTTCCAGGCTAAATTGCGGCATCTGGCAGAGGGCTC < 41bp 0.593598289351035 0.860903253068816 NA NA prediction 0.534609927435562 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15648691 chr19:15648690 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_18570 0 0 0 0 1 CYP4F22 chr19:15648683 3'AG 15648683 Downstream 8bp 17481 chr16 20497932 20497932 1 + G T READ 20497933 + 20497913 20497953 41 CCTGCCCAAGACTGTCACAGGGAAAATTCAACGAGCCAAGC CCTGCCCAAGACTGTCACATGGAAAATTCAACGAGCCAAGC < 41bp 0.564080473235532 0.831385383352384 NA NA prediction 0.534609820233704 Functional Gain - ACSM2A ENSG00000183747 CDS Human protein_coding chr16:20497933 chr16:20497932 nonsynonymous SNV 0.606 4 20 hm7G_associated_SNPs_18571 0 0 0 0 1 ACSM2A chr16:20497896 3'AG 20497896 Downstream 37bp 17482 chr19 42351804 42351804 1 + G T LUAD 42351805 + 42351785 42351825 41 TGCAACTCCCCACTTTTAGGGAGCGCCGCAGGGTCATGGCT TGCAACTCCCCACTTTTAGTGAGCGCCGCAGGGTCATGGCT < 41bp 0.486211705852038 0.767300366767037 NA NA prediction 0.534600733534074 Functional Gain - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42351805 chr19:42351804 synonymous SNV . 0 20 hm7G_associated_SNPs_18572 0 0 0 0 1 DMRTC2 chr19:42351804 3'AG 42351804 Downstream 1bp 17483 chr1 25678175 25678175 1 + G T UCEC 25678176 + 25678156 25678196 41 TTACAGTGAAGGTTGTCTGGGTCAAACAGGTAAATAGGTGC TTACAGTGAAGGTTGTCTGTGTCAAACAGGTAAATAGGTGC < 41bp 0.457238219112753 0.767295846691789 NA NA prediction 0.534591693383579 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25678176 chr1:25678175 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18574 0 0 1 0 2 TMEM50A chr1:25678117 3'AG 25678117 Downstream 59bp 17484 chr1 25678175 25678175 1 + G T UCEC 25678176 + 25678156 25678196 41 TTACAGTGAAGGTTGTCTGGGTCAAACAGGTAAATAGGTGC TTACAGTGAAGGTTGTCTGTGTCAAACAGGTAAATAGGTGC < 41bp 0.457238219112753 0.767295846691789 NA NA prediction 0.534591693383579 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25678176 chr1:25678175 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18574 0 0 1 0 2 TMEM50A chr1:25678184 5'GT 25678184 Upstream 10bp 17485 chr11 118220615 118220615 1 + G T UCEC 118220616 + 118220596 118220636 41 ATCTGGGAAGTAATGCCAAGGACCCTCGAGGGATGTATCAG ATCTGGGAAGTAATGCCAATGACCCTCGAGGGATGTATCAG < 41bp 0.586607034162987 0.853899242097519 NA NA prediction 0.534584415869063 Functional Gain - CD3G ENSG00000160654 CDS Human protein_coding chr11:118220616 chr11:118220615 nonsynonymous SNV 0.757 1 20 hm7G_associated_SNPs_18575 0 0 0 0 1 CD3G chr11:118220685 5'GT 118220685 Upstream 71bp 17486 chr20 25199194 25199194 1 + G T LUAD 25199195 + 25199175 25199215 41 CATTCCCACAGCTACCTCGGGCTCGGGCTGATGTCGGCACG CATTCCCACAGCTACCTCGTGCTCGGGCTGATGTCGGCACG < 41bp 0.590201419480941 0.857491535417432 NA NA prediction 0.534580231872981 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25199195 chr20:25199194 nonsynonymous SNV 0.890 4 20 hm7G_associated_SNPs_18577 0 0 1 0 2 ENTPD6 chr20:25199186 3'AG 25199186 Downstream 9bp 17487 chr20 25199194 25199194 1 + G T LUAD 25199195 + 25199175 25199215 41 CATTCCCACAGCTACCTCGGGCTCGGGCTGATGTCGGCACG CATTCCCACAGCTACCTCGTGCTCGGGCTGATGTCGGCACG < 41bp 0.590201419480941 0.857491535417432 NA NA prediction 0.534580231872981 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25199195 chr20:25199194 nonsynonymous SNV 0.890 4 20 hm7G_associated_SNPs_18577 0 0 1 0 2 ENTPD6 chr20:25199250 5'GT 25199250 Upstream 57bp 17488 chr9 34658544 34658544 1 + G T LUSC 34658545 + 34658525 34658565 41 GACCCACCCCAGGGCCTGCGGGTAGAGTCAGTACCAGGTTA GACCCACCCCAGGGCCTGCTGGTAGAGTCAGTACCAGGTTA < 41bp 0.608856192151923 0.876142210293061 NA NA prediction 0.534572036282277 Functional Gain - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34658545 chr9:34658544 nonsynonymous SNV 0.830 0 20 hm7G_associated_SNPs_18579 0 0 0 2 1 IL11RA chr9:34658517 3'AG 34658517 Downstream 28bp 17489 chr12 80887119 80887119 1 + G T UCEC 80887120 + 80887100 80887140 41 CAATGGTAGGATTATATGAGGGTTCAGCAGAGATGTCGTCT CAATGGTAGGATTATATGATGGTTCAGCAGAGATGTCGTCT < 41bp 0.464085334578348 0.767283384317081 NA NA prediction 0.534566768634163 Functional Gain - PTPRQ ENSG00000139304 CDS Human protein_coding chr12:80887120 chr12:80887119 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_18580 0 0 0 0 1 PTPRQ chr12:80887054 3'AG 80887054 Downstream 66bp 17490 chr19 11123631 11123631 1 + G T UCEC 11123632 + 11123612 11123652 41 TCTGTCCTTGCAGATCAAAGGTTTGGAGTGGCTGGTGTCCC TCTGTCCTTGCAGATCAAATGTTTGGAGTGGCTGGTGTCCC < 41bp 0.451509670899568 0.767273352787173 NA NA prediction 0.534546705574345 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11123632 chr19:11123631 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_18583 0 0 1 0 1 SMARCA4 chr19:11123625 3'AG 11123625 Downstream 7bp 17491 chr17 42855559 42855559 1 + G T SKCM 42855560 + 42855540 42855580 41 ATCATTGGCTCCATTGCTGGGGCTGTCCTGGTTGCAGCCAT ATCATTGGCTCCATTGCTGTGGCTGTCCTGGTTGCAGCCAT < 41bp 0.42738702930931 0.767272565522582 NA NA prediction 0.534545131045163 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855560 chr17:42855559 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18584 0 0 0 0 2 ADAM11 chr17:42855520 3'AG 42855520 Downstream 40bp 17492 chr17 42855559 42855559 1 + G T SKCM 42855560 + 42855540 42855580 41 ATCATTGGCTCCATTGCTGGGGCTGTCCTGGTTGCAGCCAT ATCATTGGCTCCATTGCTGTGGCTGTCCTGGTTGCAGCCAT < 41bp 0.42738702930931 0.767272565522582 NA NA prediction 0.534545131045163 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855560 chr17:42855559 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18584 0 0 0 0 2 ADAM11 chr17:42855610 5'GT 42855610 Upstream 52bp 17493 chr3 127682194 127682194 1 + G T UCEC 127682195 + 127682175 127682215 41 AATGCAGGGGCAGTGGATGGGAAACTCTATGTCTGCGGGGG AATGCAGGGGCAGTGGATGTGAAACTCTATGTCTGCGGGGG < 41bp 0.583785452896422 0.851046825103994 NA NA prediction 0.534522744415143 Functional Gain - KBTBD12 ENSG00000187715 CDS Human protein_coding chr3:127682195 chr3:127682194 nonsynonymous SNV 0.977 5 20 hm7G_associated_SNPs_18586 0 0 0 0 1 KBTBD12 chr3:127682229 5'GT 127682229 Upstream 36bp 17494 chr20 42203604 42203604 1 + G T STAD 42203605 + 42203585 42203625 41 GATCGAGCAGTGGACTGGTGGTGCTTGGGGGCAGTCCTCTA GATCGAGCAGTGGACTGGTTGTGCTTGGGGGCAGTCCTCTA < 41bp 0.592592521860243 0.859846736651785 NA NA prediction 0.534508429583083 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42203605 chr20:42203604 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18587 0 0 1 3 2 SGK2 chr20:42203549 3'AG 42203549 Downstream 56bp 17495 chr20 42203604 42203604 1 + G T STAD 42203605 + 42203585 42203625 41 GATCGAGCAGTGGACTGGTGGTGCTTGGGGGCAGTCCTCTA GATCGAGCAGTGGACTGGTTGTGCTTGGGGGCAGTCCTCTA < 41bp 0.592592521860243 0.859846736651785 NA NA prediction 0.534508429583083 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42203605 chr20:42203604 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18587 0 0 1 3 2 SGK2 chr20:42203644 5'GT 42203644 Upstream 41bp 17496 chr11 65721100 65721100 1 + G T LUAD 65721101 + 65721081 65721121 41 CAGCAGGCCGAGCTGCGGCGGGCCCGGACACAGCATGTACA CAGCAGGCCGAGCTGCGGCTGGCCCGGACACAGCATGTACA < 41bp 0.599103729113998 0.866331322656563 NA NA prediction 0.53445518708513 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65721101 chr11:65721100 unknown 0.042 2 20 hm7G_associated_SNPs_18590 0 0 0 0 1 TSGA10IP chr11:65721038 3'AG 65721038 Downstream 63bp 17497 chr10 37505298 37505298 1 + G T ESCA 37505299 + 37505279 37505319 41 GAGAACCAAAAAGTTAAATGGGAACAAGAGCTCTGCAGTGT GAGAACCAAAAAGTTAAATTGGAACAAGAGCTCTGCAGTGT < 41bp 0.463271340379616 0.767224115259256 NA NA prediction 0.534448230518512 Functional Gain - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37505299 chr10:37505298 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_18592 0 0 0 0 1 ANKRD30A chr10:37505322 5'GT 37505322 Upstream 25bp 17498 chr9 130982481 130982481 1 + G T THCA 130982482 + 130982462 130982502 41 TACATTGGAGTGGTGAACCGGAGCCAGAAGGACATTGATGG TACATTGGAGTGGTGAACCTGAGCCAGAAGGACATTGATGG < 41bp 0.593035752310695 0.860253453414985 NA NA prediction 0.534435402208581 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130982482 chr9:130982481 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_18593 0 0 1 0 1 DNM1 chr9:130982460 3'AG 130982460 Downstream 22bp 17499 chr12 100774680 100774680 1 + G T LUSC 100774681 + 100774661 100774701 41 ATCTTGGAGTTGCCATTGTGGAAATGGTCAACAATAGCACC ATCTTGGAGTTGCCATTGTTGAAATGGTCAACAATAGCACC < 41bp 0.450643704210893 0.767212700665267 NA NA prediction 0.534425401330534 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100774681 chr12:100774680 synonymous SNV . 0 20 hm7G_associated_SNPs_18594 0 0 0 0 1 SLC17A8 chr12:100774731 5'GT 100774731 Upstream 52bp 17500 chr14 31067700 31067700 1 + G T THCA 31067701 + 31067681 31067721 41 TTTTATAGAGATGCTTCCTGGGAATTAGAGGAAAACGCTTA TTTTATAGAGATGCTTCCTTGGAATTAGAGGAAAACGCTTA < 41bp 0.572825915241898 0.840030383165403 NA NA prediction 0.534408935847009 Functional Gain - G2E3 ENSG00000092140 CDS Human protein_coding chr14:31067701 chr14:31067700 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18596 0 0 1 0 1 G2E3 chr14:31067689 3'AG 31067689 Downstream 12bp 17501 chr3 108373010 108373010 1 + G T HNSC 108373011 + 108372991 108373031 41 GCCCATATGTGGTAGAAAAGGAAGAGCAGTTGAGGAAAGAA GCCCATATGTGGTAGAAAATGAAGAGCAGTTGAGGAAAGAA < 41bp 0.578471635215145 0.845663445780772 NA NA prediction 0.534383621131255 Functional Gain - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108373011 chr3:108373010 nonsynonymous SNV 0.854 4 20 hm7G_associated_SNPs_18597 0 0 1 0 1 DZIP3 chr3:108372992 3'AG 108372992 Downstream 19bp 17502 chr17 47109320 47109320 1 + G T LUSC 47109321 + 47109301 47109341 41 AATGTCACCTATTCCAACCGGGAGCAGACCAGGCAGTGAGT AATGTCACCTATTCCAACCTGGAGCAGACCAGGCAGTGAGT < 41bp 0.598366363377575 0.865556973189983 NA NA prediction 0.534381219624816 Functional Gain - IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47109321 chr17:47109320 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_18598 0 0 1 0 2 IGF2BP1 chr17:47109272 3'AG 47109272 Downstream 49bp 17503 chr17 47109320 47109320 1 + G T LUSC 47109321 + 47109301 47109341 41 AATGTCACCTATTCCAACCGGGAGCAGACCAGGCAGTGAGT AATGTCACCTATTCCAACCTGGAGCAGACCAGGCAGTGAGT < 41bp 0.598366363377575 0.865556973189983 NA NA prediction 0.534381219624816 Functional Gain - IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47109321 chr17:47109320 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_18598 0 0 1 0 2 IGF2BP1 chr17:47109335 5'GT 47109335 Upstream 16bp 17504 chr1 156770252 156770252 1 + G T UCEC 156770253 + 156770233 156770273 41 AAGCCAAATATGGATTCTAGGGCTCTGGAACTGATTGCTCC AAGCCAAATATGGATTCTATGGCTCTGGAACTGATTGCTCC < 41bp 0.570591400853922 0.837778229231837 NA NA prediction 0.53437365675583 Functional Gain - PRCC ENSG00000143294 CDS Human protein_coding chr1:156770253 chr1:156770252 stoploss 0.971 0 20 hm7G_associated_SNPs_18599 0 0 1 0 1 PRCC chr1:156770166 3'AG 156770166 Downstream 87bp 17505 chr6 35261675 35261675 1 + G T BLCA 35261676 + 35261656 35261696 41 CACCATGGTCAGCGCCGATGGCACCCAGACGCAGCCCGTAT CACCATGGTCAGCGCCGATTGCACCCAGACGCAGCCCGTAT < 41bp 0.594297087669427 0.861448149105281 NA NA prediction 0.534302122871708 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35261676 chr6:35261675 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18603 0 0 0 0 1 ZNF76 chr6:35261692 5'GT 35261692 Upstream 18bp 17506 chr10 45939629 45939629 1 + G T UCEC 45939630 + 45939610 45939650 41 CCCCGCCACCGACTGCCAAGGGCGTGGTGACCATTGAGCAG CCCCGCCACCGACTGCCAATGGCGTGGTGACCATTGAGCAG < 41bp 0.425578373425874 0.767144193171857 NA NA prediction 0.534288386343715 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45939630 chr10:45939629 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18604 0 0 0 0 1 ALOX5 chr10:45939564 3'AG 45939564 Downstream 66bp 17507 chrX 110963368 110963368 1 + G T COAD 110963369 + 110963349 110963389 41 ATGCTGAAAATATACCAGAGGGCTACAATAAAGGAACAGAA ATGCTGAAAATATACCAGATGGCTACAATAAAGGAACAGAA < 41bp 0.565997870799876 0.833128827351719 NA NA prediction 0.534261913103686 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110963369 chrX:110963368 nonsynonymous SNV 0.418 0 20 hm7G_associated_SNPs_18607 0 0 1 0 2 ALG13 chrX:110963323 3'AG 110963323 Downstream 46bp 17508 chrX 110963368 110963368 1 + G T COAD 110963369 + 110963349 110963389 41 ATGCTGAAAATATACCAGAGGGCTACAATAAAGGAACAGAA ATGCTGAAAATATACCAGATGGCTACAATAAAGGAACAGAA < 41bp 0.565997870799876 0.833128827351719 NA NA prediction 0.534261913103686 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110963369 chrX:110963368 nonsynonymous SNV 0.418 0 20 hm7G_associated_SNPs_18607 0 0 1 0 2 ALG13 chrX:110963398 5'GT 110963398 Upstream 31bp 17509 chr1 150960763 150960763 1 + G T THCA 150960764 + 150960744 150960784 41 CATCTTTGTTTCCAGCTTCGGTGATCAAGAACACACCGCTG CATCTTTGTTTCCAGCTTCTGTGATCAAGAACACACCGCTG < 41bp 0.571331016165063 0.838455725131646 NA NA prediction 0.534249417933164 Functional Gain - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150960764 chr1:150960763 synonymous SNV . 0 20 hm7G_associated_SNPs_18608 0 0 0 0 2 ANXA9 chr1:150960759 3'AG 150960759 Downstream 5bp 17510 chr1 150960763 150960763 1 + G T THCA 150960764 + 150960744 150960784 41 CATCTTTGTTTCCAGCTTCGGTGATCAAGAACACACCGCTG CATCTTTGTTTCCAGCTTCTGTGATCAAGAACACACCGCTG < 41bp 0.571331016165063 0.838455725131646 NA NA prediction 0.534249417933164 Functional Gain - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150960764 chr1:150960763 synonymous SNV . 0 20 hm7G_associated_SNPs_18608 0 0 0 0 2 ANXA9 chr1:150960817 5'GT 150960817 Upstream 55bp 17511 chr13 33344280 33344280 1 + G T UCEC 33344281 + 33344261 33344301 41 TGAATTGGAGAAGCCTAGAGGCAGGAAAAAAACGCCCGTCA TGAATTGGAGAAGCCTAGATGCAGGAAAAAAACGCCCGTCA < 41bp 0.468304726374453 0.767117378116049 NA NA prediction 0.534234756232099 Functional Gain - PDS5B ENSG00000083642 CDS Human protein_coding chr13:33344281 chr13:33344280 nonsynonymous SNV 0.189 0 20 hm7G_associated_SNPs_18609 0 0 0 0 1 PDS5B chr13:33344259 3'AG 33344259 Downstream 22bp 17512 chr14 39602884 39602884 1 + G T UCEC 39602885 + 39602865 39602905 41 GATAGCAAAGATGATGAGAGGGTTCCTGCTTTGAATTTATT GATAGCAAAGATGATGAGATGGTTCCTGCTTTGAATTTATT < 41bp 0.467272876141392 0.767111534292531 NA NA prediction 0.534223068585063 Functional Gain - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39602885 chr14:39602884 nonsynonymous SNV 0.960 2 20 hm7G_associated_SNPs_18610 0 0 0 1 2 GEMIN2 chr14:39602865 3'AG 39602865 Downstream 20bp 17513 chr14 39602884 39602884 1 + G T UCEC 39602885 + 39602865 39602905 41 GATAGCAAAGATGATGAGAGGGTTCCTGCTTTGAATTTATT GATAGCAAAGATGATGAGATGGTTCCTGCTTTGAATTTATT < 41bp 0.467272876141392 0.767111534292531 NA NA prediction 0.534223068585063 Functional Gain - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39602885 chr14:39602884 nonsynonymous SNV 0.960 2 20 hm7G_associated_SNPs_18610 0 0 0 1 2 GEMIN2 chr14:39602923 5'GT 39602923 Upstream 40bp 17514 chr5 180374745 180374745 1 + G T LUAD 180374746 + 180374726 180374766 41 CCTAGCCTCCAGGGGCCCAGGCCCAAAAAAGTAATCATCCT CCTAGCCTCCAGGGGCCCATGCCCAAAAAAGTAATCATCCT < 41bp 0.453868990650059 0.767110040573331 NA NA prediction 0.534220081146662 Functional Gain - BTNL8 ENSG00000113303 CDS Human protein_coding chr5:180374746 chr5:180374745 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_18611 0 0 0 0 1 BTNL8 chr5:180374755 5'GT 180374755 Upstream 11bp 17515 chr22 42204948 42204948 1 + G T LUAD 42204949 + 42204929 42204969 41 TCCTGCTTTTGTCTGGGATGGGAGCCACAGGCACCTTGAGG TCCTGCTTTTGTCTGGGATTGGAGCCACAGGCACCTTGAGG < 41bp 0.434626153888915 0.767093185574505 NA NA prediction 0.534186371149011 Functional Gain - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42204949 chr22:42204948 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_18612 0 0 1 0 2 CCDC134 chr22:42204879 3'AG 42204879 Downstream 70bp 17516 chr22 42204948 42204948 1 + G T LUAD 42204949 + 42204929 42204969 41 TCCTGCTTTTGTCTGGGATGGGAGCCACAGGCACCTTGAGG TCCTGCTTTTGTCTGGGATTGGAGCCACAGGCACCTTGAGG < 41bp 0.434626153888915 0.767093185574505 NA NA prediction 0.534186371149011 Functional Gain - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42204949 chr22:42204948 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_18612 0 0 1 0 2 CCDC134 chr22:42204997 5'GT 42204997 Upstream 50bp 17517 chr10 82187145 82187145 1 + G T UCEC 82187146 + 82187126 82187166 41 TATGGGATTTATCCGTCTGGGAGTGTGGTACAACTTCTTCC TATGGGATTTATCCGTCTGTGAGTGTGGTACAACTTCTTCC < 41bp 0.441680870375476 0.767087322357959 NA NA prediction 0.534174644715919 Functional Gain - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82187146 chr10:82187145 stopgain 0.935 1 20 hm7G_associated_SNPs_18613 0 0 1 0 1 FAM213A chr10:82187088 3'AG 82187088 Downstream 58bp 17518 chr11 46689361 46689361 1 + G T LUSC 46689362 + 46689342 46689382 41 TCAAACAGCAGTGAGGGACGGGCCTCCCCTCACGATGTCTT TCAAACAGCAGTGAGGGACTGGCCTCCCCTCACGATGTCTT < 41bp 0.438150835932842 0.767081604152044 NA NA prediction 0.534163208304088 Functional Gain - ATG13 ENSG00000175224 CDS Human protein_coding chr11:46689362 chr11:46689361 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_18614 0 0 1 0 2 ATG13 chr11:46689323 3'AG 46689323 Downstream 39bp 17519 chr11 46689361 46689361 1 + G T LUSC 46689362 + 46689342 46689382 41 TCAAACAGCAGTGAGGGACGGGCCTCCCCTCACGATGTCTT TCAAACAGCAGTGAGGGACTGGCCTCCCCTCACGATGTCTT < 41bp 0.438150835932842 0.767081604152044 NA NA prediction 0.534163208304088 Functional Gain - ATG13 ENSG00000175224 CDS Human protein_coding chr11:46689362 chr11:46689361 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_18614 0 0 1 0 2 ATG13 chr11:46689437 5'GT 46689437 Upstream 77bp 17520 chr6 43221047 43221047 1 + G T LUAD 43221048 + 43221028 43221068 41 GGGAAGGACCATGTGTGCAGGTTCATTGGCTGTGGCAGGAA GGGAAGGACCATGTGTGCATGTTCATTGGCTGTGGCAGGAA < 41bp 0.433859461772895 0.767076755604119 NA NA prediction 0.534153511208238 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43221048 chr6:43221047 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18615 0 0 0 0 2 TTBK1 chr6:43221029 3'AG 43221029 Downstream 19bp 17521 chr6 43221047 43221047 1 + G T LUAD 43221048 + 43221028 43221068 41 GGGAAGGACCATGTGTGCAGGTTCATTGGCTGTGGCAGGAA GGGAAGGACCATGTGTGCATGTTCATTGGCTGTGGCAGGAA < 41bp 0.433859461772895 0.767076755604119 NA NA prediction 0.534153511208238 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43221048 chr6:43221047 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18615 0 0 0 0 2 TTBK1 chr6:43221102 5'GT 43221102 Upstream 56bp 17522 chr10 89624267 89624267 1 + G T COAD 89624268 + 89624248 89624288 41 ATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATT ATCGTTAGCAGAAACAAAATGAGATATCAAGAGGATGGATT < 41bp 0.556258762373772 0.823322973355809 NA NA prediction 0.534128421964074 Functional Gain - PTEN ENSG00000171862 CDS Human protein_coding chr10:89624268 chr10:89624267 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18617 0 0 0 0 1 PTEN chr10:89624305 5'GT 89624305 Upstream 39bp 17523 chr1 101200254 101200254 1 + G T LUSC 101200255 + 101200235 101200275 41 AGGCCCAGTTGAAGGATGCGGGAGTATATGAATGTGAATCT AGGCCCAGTTGAAGGATGCTGGAGTATATGAATGTGAATCT < 41bp 0.455926297238115 0.767063213010884 NA NA prediction 0.534126426021767 Functional Gain - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101200255 chr1:101200254 synonymous SNV . 0 20 hm7G_associated_SNPs_18618 0 0 0 0 1 VCAM1 chr1:101200324 5'GT 101200324 Upstream 71bp 17524 chr20 60856182 60856182 1 + G T LUSC 60856183 + 60856163 60856203 41 GTCATCATCGGGAAGCTGTGGATAGAGCAGTATGGGACAGT GTCATCATCGGGAAGCTGTTGATAGAGCAGTATGGGACAGT < 41bp 0.597845106747971 0.864902876989892 NA NA prediction 0.534115540483842 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60856183 chr20:60856182 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18619 0 0 1 0 2 OSBPL2 chr20:60856114 3'AG 60856114 Downstream 69bp 17525 chr20 60856182 60856182 1 + G T LUSC 60856183 + 60856163 60856203 41 GTCATCATCGGGAAGCTGTGGATAGAGCAGTATGGGACAGT GTCATCATCGGGAAGCTGTTGATAGAGCAGTATGGGACAGT < 41bp 0.597845106747971 0.864902876989892 NA NA prediction 0.534115540483842 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60856183 chr20:60856182 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18619 0 0 1 0 2 OSBPL2 chr20:60856221 5'GT 60856221 Upstream 40bp 17526 chr2 73900023 73900023 1 + G T UCEC 73900024 + 73900004 73900044 41 CATGACCCTGGCATCTCCCGGTTGGAACCAGTAACCAAGAC CATGACCCTGGCATCTCCCTGTTGGAACCAGTAACCAAGAC < 41bp 0.555902425374008 0.822956127495488 NA NA prediction 0.534107404242961 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73900024 chr2:73900023 . . 0 20 hm7G_associated_SNPs_18620 0 0 0 0 1 ALMS1P1 chr2:73899935 3'AG 73899935 Downstream 89bp 17527 chr19 30477300 30477300 1 + G T UCEC 30477301 + 30477281 30477321 41 CTCAGCAAAGCAGGCTGTAGGTTTAGTTGAGCACCGGAAAG CTCAGCAAAGCAGGCTGTATGTTTAGTTGAGCACCGGAAAG < 41bp 0.57384625635792 0.840877616664822 NA NA prediction 0.534062720613805 Functional Gain - URI1 ENSG00000105176 CDS Human protein_coding chr19:30477301 chr19:30477300 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_18624 0 0 1 0 1 URI1 chr19:30477324 5'GT 30477324 Upstream 25bp 17528 chr21 33671345 33671345 1 + G T UCEC 33671346 + 33671326 33671366 41 AATACTACCTGGACTATCTGGACCTCATTCCCGTGGACGAG AATACTACCTGGACTATCTTGACCTCATTCCCGTGGACGAG < 41bp 0.439798876568829 0.767030418385908 NA NA prediction 0.534060836771817 Functional Gain - MRAP ENSG00000170262 CDS Human protein_coding chr21:33671346 chr21:33671345 synonymous SNV . 0 20 hm7G_associated_SNPs_18625 0 0 0 0 2 MRAP chr21:33671273 3'AG 33671273 Downstream 73bp 17529 chr21 33671345 33671345 1 + G T UCEC 33671346 + 33671326 33671366 41 AATACTACCTGGACTATCTGGACCTCATTCCCGTGGACGAG AATACTACCTGGACTATCTTGACCTCATTCCCGTGGACGAG < 41bp 0.439798876568829 0.767030418385908 NA NA prediction 0.534060836771817 Functional Gain - MRAP ENSG00000170262 CDS Human protein_coding chr21:33671346 chr21:33671345 synonymous SNV . 0 20 hm7G_associated_SNPs_18625 0 0 0 0 2 MRAP chr21:33671388 5'GT 33671388 Upstream 44bp 17530 chr7 149427646 149427646 1 + G T LUAD 149427647 + 149427627 149427667 41 AGAGCCCAGGTACTGCAGCGGCCTCGGTGCAGGTGAGCCTG AGAGCCCAGGTACTGCAGCTGCCTCGGTGCAGGTGAGCCTG < 41bp 0.433752350520204 0.767012905225889 NA NA prediction 0.534025810451779 Functional Gain - KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149427647 chr7:149427646 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_18628 0 0 1 0 1 KRBA1 chr7:149427658 5'GT 149427658 Upstream 13bp 17531 chr19 56884567 56884567 1 + G T UCEC 56884568 + 56884548 56884588 41 TGGCCATTGACTTCTCCAAGGAAGAGTGGGGATTCCTGAAC TGGCCATTGACTTCTCCAATGAAGAGTGGGGATTCCTGAAC < 41bp 0.453455473377902 0.766997690352843 NA NA prediction 0.533995380705685 Functional Gain - ZNF542P ENSG00000240225 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:56884568 chr19:56884567 . . 0 20 hm7G_associated_SNPs_18630 0 0 1 0 2 ZNF542P chr19:56884526 3'AG 56884526 Downstream 42bp 17532 chr19 56884567 56884567 1 + G T UCEC 56884568 + 56884548 56884588 41 TGGCCATTGACTTCTCCAAGGAAGAGTGGGGATTCCTGAAC TGGCCATTGACTTCTCCAATGAAGAGTGGGGATTCCTGAAC < 41bp 0.453455473377902 0.766997690352843 NA NA prediction 0.533995380705685 Functional Gain - ZNF542P ENSG00000240225 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:56884568 chr19:56884567 . . 0 20 hm7G_associated_SNPs_18630 0 0 1 0 2 ZNF542P chr19:56884652 5'GT 56884652 Upstream 86bp 17533 chr17 48562123 48562123 1 + G T COAD 48562124 + 48562104 48562144 41 GGGGTCTTCGGTGTTCCTGGGAGGGTCTGGCTGTGCTGGAC GGGGTCTTCGGTGTTCCTGTGAGGGTCTGGCTGTGCTGGAC < 41bp 0.45352531296534 0.766997614515088 NA NA prediction 0.533995229030177 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48562124 chr17:48562123 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18631 0 0 1 0 1 RSAD1 chr17:48562105 3'AG 48562105 Downstream 19bp 17534 chr16 67860069 67860069 1 + G T BLCA 67860070 + 67860050 67860090 41 TGCAGATGTGGTGGCTGGGGGCCCAGAGCGCTGGCAGATGC TGCAGATGTGGTGGCTGGGTGCCCAGAGCGCTGGCAGATGC < 41bp 0.594213594446512 0.861197978359239 NA NA prediction 0.533968767825454 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67860070 chr16:67860069 nonsynonymous SNV 0.670 4 20 hm7G_associated_SNPs_18632 0 0 0 0 1 TSNAXIP1 chr16:67860055 3'AG 67860055 Downstream 15bp 17535 chr1 243493930 243493930 1 + G T UCEC 243493931 + 243493911 243493951 41 GCATCTCAGCAAGAGAAAAGGGCCATTGAGAAAGACATGAT GCATCTCAGCAAGAGAAAATGGCCATTGAGAAAGACATGAT < 41bp 0.442555546269361 0.766984186871313 NA NA prediction 0.533968373742626 Functional Gain - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243493931 chr1:243493930 nonsynonymous SNV 0.957 3 20 hm7G_associated_SNPs_18633 0 0 1 0 2 SDCCAG8 chr1:243493842 3'AG 243493842 Downstream 89bp 17536 chr1 243493930 243493930 1 + G T UCEC 243493931 + 243493911 243493951 41 GCATCTCAGCAAGAGAAAAGGGCCATTGAGAAAGACATGAT GCATCTCAGCAAGAGAAAATGGCCATTGAGAAAGACATGAT < 41bp 0.442555546269361 0.766984186871313 NA NA prediction 0.533968373742626 Functional Gain - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243493931 chr1:243493930 nonsynonymous SNV 0.957 3 20 hm7G_associated_SNPs_18633 0 0 1 0 2 SDCCAG8 chr1:243493994 5'GT 243493994 Upstream 65bp 17537 chr16 20429520 20429520 1 + G T UCEC 20429521 + 20429501 20429541 41 GCATGCGGCCTGCAGCCTGGGGACAGAATGATGCTGGTACT GCATGCGGCCTGCAGCCTGTGGACAGAATGATGCTGGTACT < 41bp 0.603095311946608 0.870075935724435 NA NA prediction 0.533961247555654 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20429521 chr16:20429520 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18635 0 0 0 0 1 ACSM5 chr16:20429591 5'GT 20429591 Upstream 72bp 17538 chr1 150919461 150919461 1 + G T COAD 150919462 + 150919442 150919482 41 TGCACTGGAGAAGAAGCAAGGACAGCTCAGGACACGTCCAA TGCACTGGAGAAGAAGCAATGACAGCTCAGGACACGTCCAA < 41bp 0.428434856661414 0.766966276581544 NA NA prediction 0.533932553163088 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150919462 chr1:150919461 stopgain 0.999 1 20 hm7G_associated_SNPs_18636 0 0 1 0 2 SETDB1 chr1:150919362 3'AG 150919362 Downstream 100bp 17539 chr1 150919461 150919461 1 + G T COAD 150919462 + 150919442 150919482 41 TGCACTGGAGAAGAAGCAAGGACAGCTCAGGACACGTCCAA TGCACTGGAGAAGAAGCAATGACAGCTCAGGACACGTCCAA < 41bp 0.428434856661414 0.766966276581544 NA NA prediction 0.533932553163088 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150919462 chr1:150919461 stopgain 0.999 1 20 hm7G_associated_SNPs_18636 0 0 1 0 2 SETDB1 chr1:150919488 5'GT 150919488 Upstream 28bp 17540 chr9 131749907 131749907 1 + G T STAD 131749908 + 131749888 131749928 41 TTCTCTGCATCTGCAGCCTGGCATACACAGAAGCAGGACAG TTCTCTGCATCTGCAGCCTTGCATACACAGAAGCAGGACAG < 41bp 0.604936398235502 0.871898918127802 NA NA prediction 0.533925039784599 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749908 chr9:131749907 synonymous SNV . 0 20 hm7G_associated_SNPs_18638 0 0 1 0 2 NUP188 chr9:131749868 3'AG 131749868 Downstream 40bp 17541 chr9 131749907 131749907 1 + G T STAD 131749908 + 131749888 131749928 41 TTCTCTGCATCTGCAGCCTGGCATACACAGAAGCAGGACAG TTCTCTGCATCTGCAGCCTTGCATACACAGAAGCAGGACAG < 41bp 0.604936398235502 0.871898918127802 NA NA prediction 0.533925039784599 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749908 chr9:131749907 synonymous SNV . 0 20 hm7G_associated_SNPs_18638 0 0 1 0 2 NUP188 chr9:131749996 5'GT 131749996 Upstream 90bp 17542 chr12 53684657 53684657 1 + G T HNSC 53684658 + 53684638 53684678 41 CCCTAGAGAAGTCTGTGCTGGGCTGCTGGAAGGGGCTGCTG CCCTAGAGAAGTCTGTGCTTGGCTGCTGGAAGGGGCTGCTG < 41bp 0.607263927916493 0.874216074605425 NA NA prediction 0.533904293377864 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53684658 chr12:53684657 synonymous SNV . 0 20 hm7G_associated_SNPs_18640 0 0 1 0 1 ESPL1 chr12:53684625 3'AG 53684625 Downstream 33bp 17543 chr2 202719617 202719617 1 + G T UCEC 202719618 + 202719598 202719638 41 TGCTGGGAGTCCCTACAGAGGATACTTGGCCGGGAGTCTCC TGCTGGGAGTCCCTACAGATGATACTTGGCCGGGAGTCTCC < 41bp 0.580862886411017 0.847806434034511 NA NA prediction 0.533887095246987 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202719618 chr2:202719617 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_18643 0 0 0 0 2 CDK15 chr2:202719597 3'AG 202719597 Downstream 21bp 17544 chr2 202719617 202719617 1 + G T UCEC 202719618 + 202719598 202719638 41 TGCTGGGAGTCCCTACAGAGGATACTTGGCCGGGAGTCTCC TGCTGGGAGTCCCTACAGATGATACTTGGCCGGGAGTCTCC < 41bp 0.580862886411017 0.847806434034511 NA NA prediction 0.533887095246987 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202719618 chr2:202719617 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_18643 0 0 0 0 2 CDK15 chr2:202719660 5'GT 202719660 Upstream 44bp 17545 chr20 3802796 3802796 1 + G T COAD 3802797 + 3802777 3802817 41 TTCCTCATTCACACCTTGAGGGCCCCGAATACTGAGGACAC TTCCTCATTCACACCTTGATGGCCCCGAATACTGAGGACAC < 41bp 0.599776888457682 0.866717590608686 NA NA prediction 0.533881404302008 Functional Gain - AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802797 chr20:3802796 nonsynonymous SNV 0.637 1 20 hm7G_associated_SNPs_18644 0 0 1 0 1 AP5S1 chr20:3802749 3'AG 3802749 Downstream 48bp 17546 chr1 111781385 111781385 1 + G T OV 111781386 + 111781366 111781406 41 TTCTAGGAATATGCTGTGGGGTACTGGATACATAAGGGAAT TTCTAGGAATATGCTGTGGTGTACTGGATACATAAGGGAAT < 41bp 0.460130572831244 0.766938427287486 NA NA prediction 0.533876854574972 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781386 chr1:111781385 nonsynonymous SNV 0.771 3 20 hm7G_associated_SNPs_18646 0 0 0 0 1 CHI3L2 chr1:111781372 3'AG 111781372 Downstream 14bp 17547 chr1 218610736 218610736 1 + G T LUSC 218610737 + 218610717 218610757 41 TTTACATTGATTTCAAGAGGGATCTAGGGTGGAAATGGATA TTTACATTGATTTCAAGAGTGATCTAGGGTGGAAATGGATA < 41bp 0.554036615583975 0.82097322599723 NA NA prediction 0.533873220826509 Functional Gain - TGFB2 ENSG00000092969 CDS Human protein_coding chr1:218610737 chr1:218610736 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_18647 0 0 0 0 1 TGFB2 chr1:218610685 3'AG 218610685 Downstream 52bp 17548 chr17 79982598 79982598 1 + G T UCEC 79982599 + 79982579 79982619 41 TTCGGGCTGCAGGGGCCGAGGCTCTGGGAAAACTCCTCCAA TTCGGGCTGCAGGGGCCGATGCTCTGGGAAAACTCCTCCAA < 41bp 0.609094855982137 0.876031222747917 NA NA prediction 0.533872733531561 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79982599 chr17:79982598 nonsynonymous SNV 0.732 4 20 hm7G_associated_SNPs_18648 0 0 1 0 2 LRRC45 chr17:79982569 3'AG 79982569 Downstream 30bp 17549 chr17 79982598 79982598 1 + G T UCEC 79982599 + 79982579 79982619 41 TTCGGGCTGCAGGGGCCGAGGCTCTGGGAAAACTCCTCCAA TTCGGGCTGCAGGGGCCGATGCTCTGGGAAAACTCCTCCAA < 41bp 0.609094855982137 0.876031222747917 NA NA prediction 0.533872733531561 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79982599 chr17:79982598 nonsynonymous SNV 0.732 4 20 hm7G_associated_SNPs_18648 0 0 1 0 2 LRRC45 chr17:79982639 5'GT 79982639 Upstream 42bp 17550 chr4 5170102 5170102 1 + G T UCEC 5170103 + 5170083 5170123 41 AAGCAGAAGTGCATCGAGAGGGATGAGGTTCGGAATGTTTT AAGCAGAAGTGCATCGAGATGGATGAGGTTCGGAATGTTTT < 41bp 0.57136335328706 0.838299077765814 NA NA prediction 0.533871448957507 Functional Gain - STK32B ENSG00000152953 CDS Human protein_coding chr4:5170103 chr4:5170102 nonsynonymous SNV 0.908 2 20 hm7G_associated_SNPs_18649 0 0 0 0 2 STK32B chr4:5170026 3'AG 5170026 Downstream 77bp 17551 chr4 5170102 5170102 1 + G T UCEC 5170103 + 5170083 5170123 41 AAGCAGAAGTGCATCGAGAGGGATGAGGTTCGGAATGTTTT AAGCAGAAGTGCATCGAGATGGATGAGGTTCGGAATGTTTT < 41bp 0.57136335328706 0.838299077765814 NA NA prediction 0.533871448957507 Functional Gain - STK32B ENSG00000152953 CDS Human protein_coding chr4:5170103 chr4:5170102 nonsynonymous SNV 0.908 2 20 hm7G_associated_SNPs_18649 0 0 0 0 2 STK32B chr4:5170177 5'GT 5170177 Upstream 76bp 17552 chr9 102730000 102730000 1 + G T UCEC 102730001 + 102729981 102730021 41 CTGCTGTGAATGTTGAAGAGGGAACCAAAAACTTAGGGAAG CTGCTGTGAATGTTGAAGATGGAACCAAAAACTTAGGGAAG < 41bp 0.566634362653844 0.833566365008259 NA NA prediction 0.533864004708831 Functional Gain - STX17 ENSG00000136874 CDS Human protein_coding chr9:102730001 chr9:102730000 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18650 0 0 1 0 2 STX17 chr9:102729935 3'AG 102729935 Downstream 66bp 17553 chr9 102730000 102730000 1 + G T UCEC 102730001 + 102729981 102730021 41 CTGCTGTGAATGTTGAAGAGGGAACCAAAAACTTAGGGAAG CTGCTGTGAATGTTGAAGATGGAACCAAAAACTTAGGGAAG < 41bp 0.566634362653844 0.833566365008259 NA NA prediction 0.533864004708831 Functional Gain - STX17 ENSG00000136874 CDS Human protein_coding chr9:102730001 chr9:102730000 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18650 0 0 1 0 2 STX17 chr9:102730021 5'GT 102730021 Upstream 22bp 17554 chr5 31294083 31294083 1 + G T STAD 31294084 + 31294064 31294104 41 ACTAGTTACATTCAGACCAGGATAGAGGAGATGGATCACTT ACTAGTTACATTCAGACCATGATAGAGGAGATGGATCACTT < 41bp 0.556450487409221 0.823379216911707 NA NA prediction 0.533857459004972 Functional Gain - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31294084 chr5:31294083 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_18651 0 0 0 0 1 CDH6 chr5:31294069 3'AG 31294069 Downstream 15bp 17555 chr2 128390875 128390875 1 + G T UCEC 128390876 + 128390856 128390896 41 CGCACCAGGTGGAGGTGGAGGCCGCAGAGCAGAACGTCTCC CGCACCAGGTGGAGGTGGATGCCGCAGAGCAGAACGTCTCC < 41bp 0.434383780109813 0.766913853195116 NA NA prediction 0.533827706390231 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128390876 chr2:128390875 nonsynonymous SNV 0.742 2 20 hm7G_associated_SNPs_18652 0 0 0 0 2 MYO7B chr2:128390833 3'AG 128390833 Downstream 43bp 17556 chr2 128390875 128390875 1 + G T UCEC 128390876 + 128390856 128390896 41 CGCACCAGGTGGAGGTGGAGGCCGCAGAGCAGAACGTCTCC CGCACCAGGTGGAGGTGGATGCCGCAGAGCAGAACGTCTCC < 41bp 0.434383780109813 0.766913853195116 NA NA prediction 0.533827706390231 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128390876 chr2:128390875 nonsynonymous SNV 0.742 2 20 hm7G_associated_SNPs_18652 0 0 0 0 2 MYO7B chr2:128390938 5'GT 128390938 Upstream 64bp 17557 chr7 37988590 37988590 1 + G T LIHC 37988591 + 37988571 37988611 41 TGAAGACCAGTACTCCATCGGGGGGCCTCAGGAGCAGATCA TGAAGACCAGTACTCCATCTGGGGGCCTCAGGAGCAGATCA < 41bp 0.592566596229545 0.85947889327007 NA NA prediction 0.533824594081049 Functional Gain - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37988591 chr7:37988590 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_18653 0 0 1 0 1 EPDR1 chr7:37988650 5'GT 37988650 Upstream 61bp 17558 chr15 91503599 91503599 1 + G T LUSC 91503600 + 91503580 91503620 41 TTCTCAGGTGAAGAGAACGGGTGGGGCTGAGGATGGAGCCC TTCTCAGGTGAAGAGAACGTGTGGGGCTGAGGATGGAGCCC < 41bp 0.449602062433232 0.766902055898077 NA NA prediction 0.533804111796154 Functional Gain - RCCD1 ENSG00000166965 CDS Human protein_coding chr15:91503600 chr15:91503599 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_18654 0 0 1 0 1 RCCD1 chr15:91503558 3'AG 91503558 Downstream 42bp 17559 chr12 6967702 6967702 1 + G T UCEC 6967703 + 6967683 6967723 41 GTTTGGGCCTGGCTACACAGGCATCCGGAACCTGGGTAACA GTTTGGGCCTGGCTACACATGCATCCGGAACCTGGGTAACA < 41bp 0.605645920019203 0.872538222026858 NA NA prediction 0.53378460401531 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6967703 chr12:6967702 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18656 0 0 1 0 1 USP5 chr12:6967781 5'GT 6967781 Upstream 80bp 17560 chr5 142258989 142258989 1 + G T UCEC 142258990 + 142258970 142259010 41 CCTTGGAGAAGTTTCGAAAGGAACAGATCGGGGCTGCCAAG CCTTGGAGAAGTTTCGAAATGAACAGATCGGGGCTGCCAAG < 41bp 0.456247933062728 0.766885292540389 NA NA prediction 0.533770585080779 Functional Gain - ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142258990 chr5:142258989 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_18657 0 0 1 0 2 ARHGAP26 chr5:142258939 3'AG 142258939 Downstream 51bp 17561 chr5 142258989 142258989 1 + G T UCEC 142258990 + 142258970 142259010 41 CCTTGGAGAAGTTTCGAAAGGAACAGATCGGGGCTGCCAAG CCTTGGAGAAGTTTCGAAATGAACAGATCGGGGCTGCCAAG < 41bp 0.456247933062728 0.766885292540389 NA NA prediction 0.533770585080779 Functional Gain - ARHGAP26 ENSG00000145819 CDS Human protein_coding chr5:142258990 chr5:142258989 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_18657 0 0 1 0 2 ARHGAP26 chr5:142259010 5'GT 142259010 Upstream 22bp 17562 chr20 31624273 31624273 1 + G T COAD 31624274 + 31624254 31624294 41 CCATGCCTGTGGGCCAGATGGGCACCGTCAAATATGTTCTG CCATGCCTGTGGGCCAGATTGGCACCGTCAAATATGTTCTG < 41bp 0.426893838219788 0.766884348327239 NA NA prediction 0.533768696654478 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31624274 chr20:31624273 nonsynonymous SNV 0.692 0 20 hm7G_associated_SNPs_18658 0 0 0 0 1 BPIFB6 chr20:31624251 3'AG 31624251 Downstream 23bp 17563 chr1 33138255 33138255 1 + G T COAD 33138256 + 33138236 33138276 41 GTACTAGTAAAATTGGAGAGGAACAATCCCCAGAAGATGCA GTACTAGTAAAATTGGAGATGAACAATCCCCAGAAGATGCA < 41bp 0.570288255612602 0.837163898449712 NA NA prediction 0.533751285674222 Functional Gain - RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33138256 chr1:33138255 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_18659 0 0 1 0 2 RBBP4 chr1:33138243 3'AG 33138243 Downstream 13bp 17564 chr1 33138255 33138255 1 + G T COAD 33138256 + 33138236 33138276 41 GTACTAGTAAAATTGGAGAGGAACAATCCCCAGAAGATGCA GTACTAGTAAAATTGGAGATGAACAATCCCCAGAAGATGCA < 41bp 0.570288255612602 0.837163898449712 NA NA prediction 0.533751285674222 Functional Gain - RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33138256 chr1:33138255 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_18659 0 0 1 0 2 RBBP4 chr1:33138300 5'GT 33138300 Upstream 46bp 17565 chr7 20766712 20766712 1 + G T HNSC 20766713 + 20766693 20766733 41 ACTATAGTGTCATTAACAAGGGAAAAAGCCTTCGAGCAAAT ACTATAGTGTCATTAACAATGGAAAAAGCCTTCGAGCAAAT < 41bp 0.446536551662322 0.766873749673291 NA NA prediction 0.533747499346581 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20766713 chr7:20766712 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18660 0 0 0 0 2 ABCB5 chr7:20766663 3'AG 20766663 Downstream 50bp 17566 chr7 20766712 20766712 1 + G T HNSC 20766713 + 20766693 20766733 41 ACTATAGTGTCATTAACAAGGGAAAAAGCCTTCGAGCAAAT ACTATAGTGTCATTAACAATGGAAAAAGCCTTCGAGCAAAT < 41bp 0.446536551662322 0.766873749673291 NA NA prediction 0.533747499346581 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20766713 chr7:20766712 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18660 0 0 0 0 2 ABCB5 chr7:20766763 5'GT 20766763 Upstream 52bp 17567 chr6 108768448 108768448 1 + G T LUSC 108768449 + 108768429 108768469 41 ACAGTCCAGCTAGATTCTGGGATAGATTACCGGAAAAGGGA ACAGTCCAGCTAGATTCTGTGATAGATTACCGGAAAAGGGA < 41bp 0.582212668078021 0.849072240180766 NA NA prediction 0.53371914420549 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108768449 chr6:108768448 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18661 0 0 0 0 2 AFG1L chr6:108768417 3'AG 108768417 Downstream 32bp 17568 chr6 108768448 108768448 1 + G T LUSC 108768449 + 108768429 108768469 41 ACAGTCCAGCTAGATTCTGGGATAGATTACCGGAAAAGGGA ACAGTCCAGCTAGATTCTGTGATAGATTACCGGAAAAGGGA < 41bp 0.582212668078021 0.849072240180766 NA NA prediction 0.53371914420549 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108768449 chr6:108768448 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18661 0 0 0 0 2 AFG1L chr6:108768499 5'GT 108768499 Upstream 52bp 17569 chr17 45419354 45419354 1 + G T UCEC 45419355 + 45419335 45419375 41 TTCAGGAGAAAAAAAAGTTGGGAGAAAGAGTTTACAAGTAC TTCAGGAGAAAAAAAAGTTTGGAGAAAGAGTTTACAAGTAC < 41bp 0.446835109063115 0.766838204686386 NA NA prediction 0.533676409372773 Functional Gain - EFCAB13 ENSG00000178852 CDS Human protein_coding chr17:45419355 chr17:45419354 nonsynonymous SNV 0.108 1 20 hm7G_associated_SNPs_18665 0 0 1 0 2 EFCAB13 chr17:45419287 3'AG 45419287 Downstream 68bp 17570 chr17 45419354 45419354 1 + G T UCEC 45419355 + 45419335 45419375 41 TTCAGGAGAAAAAAAAGTTGGGAGAAAGAGTTTACAAGTAC TTCAGGAGAAAAAAAAGTTTGGAGAAAGAGTTTACAAGTAC < 41bp 0.446835109063115 0.766838204686386 NA NA prediction 0.533676409372773 Functional Gain - EFCAB13 ENSG00000178852 CDS Human protein_coding chr17:45419355 chr17:45419354 nonsynonymous SNV 0.108 1 20 hm7G_associated_SNPs_18665 0 0 1 0 2 EFCAB13 chr17:45419398 5'GT 45419398 Upstream 45bp 17571 chr14 74345831 74345831 1 + G T THYM 74345832 + 74345812 74345852 41 TAGGTTGTTCCAGAGTGGTGGGAATTTGTGGAACACATGAG TAGGTTGTTCCAGAGTGGTTGGAATTTGTGGAACACATGAG < 41bp 0.588828614731774 0.855659664062518 NA NA prediction 0.533662098661489 Functional Gain - PTGR2 ENSG00000140043 CDS Human protein_coding chr14:74345832 chr14:74345831 synonymous SNV . 0 20 hm7G_associated_SNPs_18667 0 0 0 0 1 PTGR2 chr14:74345799 3'AG 74345799 Downstream 33bp 17572 chr3 16254182 16254182 1 + G T UCEC 16254183 + 16254163 16254203 41 GACCAGGAGGCCACCCTGAGGAACAGGGTTCGCATTGCTGA GACCAGGAGGCCACCCTGATGAACAGGGTTCGCATTGCTGA < 41bp 0.438485936031994 0.766826816030867 NA NA prediction 0.533653632061734 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16254183 chr3:16254182 nonsynonymous SNV 0.012 1 20 hm7G_associated_SNPs_18669 0 0 0 0 1 GALNT15 chr3:16254270 5'GT 16254270 Upstream 89bp 17573 chr22 21331001 21331001 1 + G T UCEC 21331002 + 21330982 21331022 41 TGTCTGTGGTGGAGCTGGAGGAGACGCCCTTCAGGAGGTTC TGTCTGTGGTGGAGCTGGATGAGACGCCCTTCAGGAGGTTC < 41bp 0.59690590805489 0.86373090757786 NA NA prediction 0.53364999904594 Functional Gain - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21331002 chr22:21331001 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18670 0 0 0 0 2 AIFM3 chr22:21330940 3'AG 21330940 Downstream 62bp 17574 chr22 21331001 21331001 1 + G T UCEC 21331002 + 21330982 21331022 41 TGTCTGTGGTGGAGCTGGAGGAGACGCCCTTCAGGAGGTTC TGTCTGTGGTGGAGCTGGATGAGACGCCCTTCAGGAGGTTC < 41bp 0.59690590805489 0.86373090757786 NA NA prediction 0.53364999904594 Functional Gain - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21331002 chr22:21331001 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18670 0 0 0 0 2 AIFM3 chr22:21331055 5'GT 21331055 Upstream 55bp 17575 chr2 241536158 241536158 1 + G T COAD 241536159 + 241536139 241536179 41 CCCTGCCTGCGGGGGAGTGGGGGACCGTGCAGCTACGGGGT CCCTGCCTGCGGGGGAGTGTGGGACCGTGCAGCTACGGGGT < 41bp 0.438460785271708 0.766806272247867 NA NA prediction 0.533612544495734 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241536159 chr2:241536158 nonsynonymous SNV 0.789 4 20 hm7G_associated_SNPs_18671 0 0 1 0 1 CAPN10 chr2:241536098 3'AG 241536098 Downstream 61bp 17576 chr17 40961410 40961410 1 + G T GBM 40961411 + 40961391 40961431 41 GCATTTGCAGAGCATCACTGGTATTGCCTTGGCAAGCATTG GCATTTGCAGAGCATCACTTGTATTGCCTTGGCAAGCATTG < 41bp 0.465669346720137 0.766799912904348 NA NA prediction 0.533599825808696 Functional Gain - CNTD1 ENSG00000176563 CDS Human protein_coding chr17:40961411 chr17:40961410 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18673 0 0 0 0 1 CNTD1 chr17:40961383 3'AG 40961383 Downstream 28bp 17577 chr10 101499525 101499525 1 + G T LUSC 101499526 + 101499506 101499546 41 GGGGAACTACACCCAGCATGGGTAAGTGTCCATTTTTCCCA GGGGAACTACACCCAGCATTGGTAAGTGTCCATTTTTCCCA < 41bp 0.439944692549144 0.766788612488156 NA NA prediction 0.533577224976313 Functional Gain - CUTC ENSG00000119929 CDS Human protein_coding chr10:101499526 chr10:101499525 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_18676 0 0 1 1 2 CUTC chr10:101499467 3'AG 101499467 Downstream 59bp 17578 chr10 101499525 101499525 1 + G T LUSC 101499526 + 101499506 101499546 41 GGGGAACTACACCCAGCATGGGTAAGTGTCCATTTTTCCCA GGGGAACTACACCCAGCATTGGTAAGTGTCCATTTTTCCCA < 41bp 0.439944692549144 0.766788612488156 NA NA prediction 0.533577224976313 Functional Gain - CUTC ENSG00000119929 CDS Human protein_coding chr10:101499526 chr10:101499525 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_18676 0 0 1 1 2 CUTC chr10:101499526 5'GT 101499526 Upstream 2bp 17579 chr7 55991322 55991322 1 + G T LUAD 55991323 + 55991303 55991343 41 ATCAGCTTTGTAAGCCAGAGGTAATCGCGCAGTTGGAGCTA ATCAGCTTTGTAAGCCAGATGTAATCGCGCAGTTGGAGCTA < 41bp 0.589570812683227 0.856351350590665 NA NA prediction 0.533561075814877 Functional Gain - ZNF713 ENSG00000178665;ENSG00000249773 CDS Human other chr7:55991323 chr7:55991322 nonsynonymous SNV 0.979 0 20 hm7G_associated_SNPs_18678 0 0 0 0 1 ZNF713 chr7:55991392 5'GT 55991392 Upstream 71bp 17580 chr10 45467267 45467267 1 + G T UCEC 45467268 + 45467248 45467288 41 CTACAACTGCTACCATGAGGGCAAGAGCTTCCAGCTGAGAC CTACAACTGCTACCATGAGTGCAAGAGCTTCCAGCTGAGAC < 41bp 0.441520515817745 0.766769676769015 NA NA prediction 0.53353935353803 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45467268 chr10:45467267 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_18680 0 0 1 0 2 RASSF4 chr10:45467221 3'AG 45467221 Downstream 47bp 17581 chr10 45467267 45467267 1 + G T UCEC 45467268 + 45467248 45467288 41 CTACAACTGCTACCATGAGGGCAAGAGCTTCCAGCTGAGAC CTACAACTGCTACCATGAGTGCAAGAGCTTCCAGCTGAGAC < 41bp 0.441520515817745 0.766769676769015 NA NA prediction 0.53353935353803 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45467268 chr10:45467267 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_18680 0 0 1 0 2 RASSF4 chr10:45467296 5'GT 45467296 Upstream 30bp 17582 chr8 19701626 19701626 1 + G T UCEC 19701627 + 19701607 19701647 41 CAGAGACGACATGGCATTGGGGCATGTGATTGTGTTGCTTC CAGAGACGACATGGCATTGTGGCATGTGATTGTGTTGCTTC < 41bp 0.596525791758358 0.863275252718851 NA NA prediction 0.533498921920986 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19701627 chr8:19701626 nonsynonymous SNV 0.115 4 20 hm7G_associated_SNPs_18682 0 0 1 0 1 INTS10 chr8:19701587 3'AG 19701587 Downstream 40bp 17583 chr2 202712137 202712137 1 + G T LUAD 202712138 + 202712118 202712158 41 TCTTTATTGAAATGTTCCAGGGTCAACCTTTGTTTCCTGGG TCTTTATTGAAATGTTCCATGGTCAACCTTTGTTTCCTGGG < 41bp 0.580625765349191 0.847368429865283 NA NA prediction 0.533485329032184 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202712138 chr2:202712137 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18683 0 0 0 0 2 CDK15 chr2:202712104 3'AG 202712104 Downstream 34bp 17584 chr2 202712137 202712137 1 + G T LUAD 202712138 + 202712118 202712158 41 TCTTTATTGAAATGTTCCAGGGTCAACCTTTGTTTCCTGGG TCTTTATTGAAATGTTCCATGGTCAACCTTTGTTTCCTGGG < 41bp 0.580625765349191 0.847368429865283 NA NA prediction 0.533485329032184 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202712138 chr2:202712137 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18683 0 0 0 0 2 CDK15 chr2:202712197 5'GT 202712197 Upstream 61bp 17585 chr11 22294421 22294421 1 + G T LUSC 22294422 + 22294402 22294442 41 ATATTGTAGAGATTCGAGTGGATGCCTGGAAACTTACCACT ATATTGTAGAGATTCGAGTTGATGCCTGGAAACTTACCACT < 41bp 0.582921423029312 0.84966239325458 NA NA prediction 0.533481940450537 Functional Gain - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22294422 chr11:22294421 synonymous SNV . 0 20 hm7G_associated_SNPs_18684 0 0 1 0 1 ANO5 chr11:22294330 3'AG 22294330 Downstream 92bp 17586 chr20 44664168 44664168 1 + G T LUAD 44664169 + 44664149 44664189 41 AGGGTGGAAAAAAGAAGCCGGTGCAGGTGAGGACCTCGGGG AGGGTGGAAAAAAGAAGCCTGTGCAGGTGAGGACCTCGGGG < 41bp 0.440362078253353 0.766723019486553 NA NA prediction 0.533446038973106 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44664169 chr20:44664168 synonymous SNV . 0 20 hm7G_associated_SNPs_18687 0 0 0 0 1 SLC12A5 chr20:44664174 5'GT 44664174 Upstream 7bp 17587 chr11 18723218 18723218 1 + G T LUSC 18723219 + 18723199 18723239 41 GGTGATGGCAGCGCTGTCGGGCCTGTGCTATGCCCTCCTCT GGTGATGGCAGCGCTGTCGTGCCTGTGCTATGCCCTCCTCT < 41bp 0.59406098894806 0.860782169729705 NA NA prediction 0.533442361563289 Functional Gain - TMEM86A ENSG00000151117 CDS Human protein_coding chr11:18723219 chr11:18723218 nonsynonymous SNV 0.866 0 20 hm7G_associated_SNPs_18689 0 0 0 0 1 TMEM86A chr11:18723120 3'AG 18723120 Downstream 99bp 17588 chr5 145882946 145882946 1 + G T UCEC 145882947 + 145882927 145882967 41 TTAAAATACAGATTAAATCGGATTTCTTTGAACTATTATCT TTAAAATACAGATTAAATCTGATTTCTTTGAACTATTATCT < 41bp 0.452541826271205 0.766720162577809 NA NA prediction 0.533440325155618 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145882947 chr5:145882946 synonymous SNV . 0 20 hm7G_associated_SNPs_18690 0 0 1 0 1 TCERG1 chr5:145882938 3'AG 145882938 Downstream 9bp 17589 chr17 79073782 79073782 1 + G T UCEC 79073783 + 79073763 79073803 41 GGAGAATTACGTGTCCGACGGCTACAAGACCGCACTGACAG GGAGAATTACGTGTCCGACTGCTACAAGACCGCACTGACAG < 41bp 0.601129661110872 0.867846892246397 NA NA prediction 0.533434462271049 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79073783 chr17:79073782 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_18691 0 0 1 0 2 BAIAP2 chr17:79073728 3'AG 79073728 Downstream 55bp 17590 chr17 79073782 79073782 1 + G T UCEC 79073783 + 79073763 79073803 41 GGAGAATTACGTGTCCGACGGCTACAAGACCGCACTGACAG GGAGAATTACGTGTCCGACTGCTACAAGACCGCACTGACAG < 41bp 0.601129661110872 0.867846892246397 NA NA prediction 0.533434462271049 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79073783 chr17:79073782 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_18691 0 0 1 0 2 BAIAP2 chr17:79073880 5'GT 79073880 Upstream 99bp 17591 chr4 6610942 6610942 1 + G T STAD 6610943 + 6610923 6610963 41 ACCTGTTCACACCGGGCAAGGCCGCGGTGCCTGCGTGGGAA ACCTGTTCACACCGGGCAATGCCGCGGTGCCTGCGTGGGAA < 41bp 0.42732022313631 0.766710253971722 NA NA prediction 0.533420507943445 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6610943 chr4:6610942 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_18692 0 0 0 0 1 MAN2B2 chr4:6611025 5'GT 6611025 Upstream 84bp 17592 chr6 17605137 17605137 1 + G T UCEC 17605138 + 17605118 17605158 41 AAACTATTATTTTGTGTAGGGATATCTCTAAGTTTGCTATG AAACTATTATTTTGTGTAGTGATATCTCTAAGTTTGCTATG < 41bp 0.550851888903244 0.817549675109596 NA NA prediction 0.533395572412705 Functional Gain - FAM8A1 ENSG00000137414 CDS Human protein_coding chr6:17605138 chr6:17605137 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_18693 0 0 1 0 1 FAM8A1 chr6:17605137 3'AG 17605137 Downstream 1bp 17593 chr12 7069291 7069291 1 + G T GBM 7069292 + 7069272 7069312 41 TCCAGAAGACCATCCAGATGGTGCGGGCGCAGCGCTCGGGC TCCAGAAGACCATCCAGATTGTGCGGGCGCAGCGCTCGGGC < 41bp 0.598091093055263 0.864783182221748 NA NA prediction 0.53338417833297 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7069292 chr12:7069291 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_18695 0 0 0 0 1 PTPN6 chr12:7069251 3'AG 7069251 Downstream 41bp 17594 chr2 25022623 25022623 1 + G T UCEC 25022624 + 25022604 25022644 41 AAGAGCTGCAGAGCGTGCAGGCCCAGGAAGGTGCTCTTGGA AAGAGCTGCAGAGCGTGCATGCCCAGGAAGGTGCTCTTGGA < 41bp 0.595919526600764 0.862607146238817 NA NA prediction 0.533375239276106 Functional Gain - CENPO ENSG00000138092 CDS Human protein_coding chr2:25022624 chr2:25022623 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_18696 0 0 1 0 1 CENPO chr2:25022544 3'AG 25022544 Downstream 80bp 17595 chr16 55522574 55522574 1 + G T LUSC 55522575 + 55522555 55522595 41 GGATGGCTACCGCTGGTGCGGCACCACTGAGGACTACGACC GGATGGCTACCGCTGGTGCTGCACCACTGAGGACTACGACC < 41bp 0.613939271855812 0.880617280793126 NA NA prediction 0.533356017874628 Functional Gain - MMP2 ENSG00000087245 CDS Human protein_coding chr16:55522575 chr16:55522574 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_18699 0 0 0 0 1 MMP2 chr16:55522628 5'GT 55522628 Upstream 55bp 17596 chr20 61299221 61299221 1 + G T CESC 61299222 + 61299202 61299242 41 CTTCTCACTGTGCCACGCAGGGTGCCCTGCAGCCACGGAGA CTTCTCACTGTGCCACGCATGGTGCCCTGCAGCCACGGAGA < 41bp 0.608853185016221 0.875525327066532 NA NA prediction 0.533344284100622 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61299222 chr20:61299221 nonsynonymous SNV 0.004 4 20 hm7G_associated_SNPs_18701 0 0 1 0 1 SLCO4A1 chr20:61299262 5'GT 61299262 Upstream 42bp 17597 chr13 25272964 25272964 1 + G T LUAD 25272965 + 25272945 25272985 41 CACAGCCTACATGGAGCTGGGCGGGTTGGGCGAGCGTGTGC CACAGCCTACATGGAGCTGTGCGGGTTGGGCGAGCGTGTGC < 41bp 0.606039913014773 0.872695964682518 NA NA prediction 0.533312103335488 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25272965 chr13:25272964 nonsynonymous SNV 0.461 4 20 hm7G_associated_SNPs_18705 0 0 0 0 1 ATP12A chr13:25272988 5'GT 25272988 Upstream 25bp 17598 chr10 71697418 71697418 1 + G T UCEC 71697419 + 71697399 71697439 41 AGGACTAGATGGAGCAAAAGGAGAGAAAGGCTTCCAGGGAG AGGACTAGATGGAGCAAAATGAGAGAAAGGCTTCCAGGGAG < 41bp 0.451190255637371 0.766642330083511 NA NA prediction 0.533284660167023 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71697419 chr10:71697418 stopgain 0.984 1 20 hm7G_associated_SNPs_18706 0 0 0 0 2 COL13A1 chr10:71697391 3'AG 71697391 Downstream 28bp 17599 chr10 71697418 71697418 1 + G T UCEC 71697419 + 71697399 71697439 41 AGGACTAGATGGAGCAAAAGGAGAGAAAGGCTTCCAGGGAG AGGACTAGATGGAGCAAAATGAGAGAAAGGCTTCCAGGGAG < 41bp 0.451190255637371 0.766642330083511 NA NA prediction 0.533284660167023 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71697419 chr10:71697418 stopgain 0.984 1 20 hm7G_associated_SNPs_18706 0 0 0 0 2 COL13A1 chr10:71697471 5'GT 71697471 Upstream 54bp 17600 chr8 126369990 126369990 1 + G T LUSC 126369991 + 126369971 126370011 41 AGTGAAAAATAAAGTGTGTGGCCACACCTATGAAGAGGACG AGTGAAAAATAAAGTGTGTTGCCACACCTATGAAGAGGACG < 41bp 0.589332306112959 0.85596068270446 NA NA prediction 0.533256753183003 Functional Gain - NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126369991 chr8:126369990 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18710 0 0 1 0 2 NSMCE2 chr8:126369954 3'AG 126369954 Downstream 37bp 17601 chr8 126369990 126369990 1 + G T LUSC 126369991 + 126369971 126370011 41 AGTGAAAAATAAAGTGTGTGGCCACACCTATGAAGAGGACG AGTGAAAAATAAAGTGTGTTGCCACACCTATGAAGAGGACG < 41bp 0.589332306112959 0.85596068270446 NA NA prediction 0.533256753183003 Functional Gain - NSMCE2 ENSG00000156831 CDS Human protein_coding chr8:126369991 chr8:126369990 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18710 0 0 1 0 2 NSMCE2 chr8:126370060 5'GT 126370060 Upstream 71bp 17602 chr2 61391567 61391567 1 + G T COAD 61391568 + 61391548 61391588 41 CCAAAAAAGACCTTTAAAAGGAGTGACATTTTCTAGGGAGG CCAAAAAAGACCTTTAAAATGAGTGACATTTTCTAGGGAGG < 41bp 0.555951335156078 0.822558285622397 NA NA prediction 0.533213900932639 Functional Gain - C2orf74 ENSG00000237651 CDS Human protein_coding chr2:61391568 chr2:61391567 stopgain 1.000 0 20 hm7G_associated_SNPs_18713 0 0 0 0 1 C2orf74 chr2:61391489 3'AG 61391489 Downstream 79bp 17603 chr7 77579038 77579038 1 + G T LIHC 77579039 + 77579019 77579059 41 CTTGATTGTCACTACAATTGGGAATTGGTAATCTGGTGCAT CTTGATTGTCACTACAATTTGGAATTGGTAATCTGGTGCAT < 41bp 0.464191320220394 0.766601367790076 NA NA prediction 0.533202735580151 Functional Gain - PHTF2 ENSG00000006576 CDS Human protein_coding chr7:77579039 chr7:77579038 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_18714 0 0 0 0 1 PHTF2 chr7:77578995 3'AG 77578995 Downstream 44bp 17604 chr18 21047458 21047458 1 + G T LGG 21047459 + 21047439 21047479 41 GCTGTATTAGTACAGGAAAGGAGTCTGTTGTCTTTCATGCA GCTGTATTAGTACAGGAAATGAGTCTGTTGTCTTTCATGCA < 41bp 0.576745098558282 0.843341326043776 NA NA prediction 0.533192454970987 Functional Gain - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21047459 chr18:21047458 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18715 0 0 1 0 2 RIOK3 chr18:21047363 3'AG 21047363 Downstream 96bp 17605 chr18 21047458 21047458 1 + G T LGG 21047459 + 21047439 21047479 41 GCTGTATTAGTACAGGAAAGGAGTCTGTTGTCTTTCATGCA GCTGTATTAGTACAGGAAATGAGTCTGTTGTCTTTCATGCA < 41bp 0.576745098558282 0.843341326043776 NA NA prediction 0.533192454970987 Functional Gain - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21047459 chr18:21047458 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18715 0 0 1 0 2 RIOK3 chr18:21047490 5'GT 21047490 Upstream 33bp 17606 chr9 19369969 19369969 1 + G T LGG 19369970 + 19369950 19369990 41 TTCACAGCAAATGAAGCCAGGCATGAAAAGACAAAGGTAAT TTCACAGCAAATGAAGCCATGCATGAAAAGACAAAGGTAAT < 41bp 0.56469638782075 0.831278279074148 NA NA prediction 0.533163782506796 Functional Gain - DENND4C ENSG00000137145 CDS Human protein_coding chr9:19369970 chr9:19369969 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_18716 0 0 0 0 1 DENND4C chr9:19369985 5'GT 19369985 Upstream 17bp 17607 chr19 2351562 2351562 1 + G T LUSC 2351563 + 2351543 2351583 41 CGCTCTGGCGCCGGGAGCTGGGCGTGTTCTGGACGGGCAGC CGCTCTGGCGCCGGGAGCTTGGCGTGTTCTGGACGGGCAGC < 41bp 0.444985112611746 0.766552016020126 NA NA prediction 0.533104032040252 Functional Gain - SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2351563 chr19:2351562 . . 0 20 hm7G_associated_SNPs_18719 0 0 1 0 2 SPPL2B chr19:2351592 5'GT 2351592 Upstream 31bp 17608 chr19 2351562 2351562 1 + G T LUSC 2351563 + 2351543 2351583 41 CGCTCTGGCGCCGGGAGCTGGGCGTGTTCTGGACGGGCAGC CGCTCTGGCGCCGGGAGCTTGGCGTGTTCTGGACGGGCAGC < 41bp 0.444985112611746 0.766552016020126 NA NA prediction 0.533104032040252 Functional Gain - SPPL2B ENSG00000005206 ncRNA_exonic Human protein_coding chr19:2351563 chr19:2351562 . . 0 20 hm7G_associated_SNPs_18719 0 0 1 0 2 SPPL2B chr19:2351655 5'GT 2351655 Upstream 94bp 17609 chr22 35659194 35659194 1 + G T LUAD 35659195 + 35659175 35659215 41 GAAATTGCTGCTCAGGTCAGGAATTCTTCCAAGAAGAAGTT GAAATTGCTGCTCAGGTCATGAATTCTTCCAAGAAGAAGTT < 41bp 0.489052397221561 0.766536884215925 NA NA prediction 0.533073768431851 Functional Gain - HMGXB4 ENSG00000100281 CDS Human protein_coding chr22:35659195 chr22:35659194 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18720 0 0 1 0 1 HMGXB4 chr22:35659219 5'GT 35659219 Upstream 26bp 17610 chrX 134986669 134986669 1 + G T COAD 134986670 + 134986650 134986690 41 CACAGCATTTGTGAAGAGAGGATAAATAACGGCCAACCAGT CACAGCATTTGTGAAGAGATGATAAATAACGGCCAACCAGT < 41bp 0.559597468244473 0.826118689537086 NA NA prediction 0.533042442585226 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134986670 chrX:134986669 nonsynonymous SNV 0.010 2 20 hm7G_associated_SNPs_18722 0 0 0 0 2 SAGE1 chrX:134986636 3'AG 134986636 Downstream 34bp 17611 chrX 134986669 134986669 1 + G T COAD 134986670 + 134986650 134986690 41 CACAGCATTTGTGAAGAGAGGATAAATAACGGCCAACCAGT CACAGCATTTGTGAAGAGATGATAAATAACGGCCAACCAGT < 41bp 0.559597468244473 0.826118689537086 NA NA prediction 0.533042442585226 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134986670 chrX:134986669 nonsynonymous SNV 0.010 2 20 hm7G_associated_SNPs_18722 0 0 0 0 2 SAGE1 chrX:134986728 5'GT 134986728 Upstream 60bp 17612 chr1 38023246 38023246 1 + G T UCEC 38023247 + 38023227 38023267 41 CCAGCAGCCTGGACCTTCAGGTTCAGCCCCACAGCCACCCA CCAGCAGCCTGGACCTTCATGTTCAGCCCCACAGCCACCCA < 41bp 0.603405775460718 0.869924224651067 NA NA prediction 0.533036898380699 Functional Gain - DNALI1 ENSG00000163879 CDS Human protein_coding chr1:38023247 chr1:38023246 nonsynonymous SNV 0.808 3 20 hm7G_associated_SNPs_18723 0 0 0 0 1 DNALI1 chr1:38023204 3'AG 38023204 Downstream 43bp 17613 chr6 150267555 150267555 1 + G T UCEC 150267556 + 150267536 150267576 41 TTGTGAGCAGAAAGCTGAAGGACACAGCAGTGGATCTTGGC TTGTGAGCAGAAAGCTGAATGACACAGCAGTGGATCTTGGC < 41bp 0.588305290537079 0.854815553711583 NA NA prediction 0.533020526349008 Functional Gain - ULBP2 ENSG00000131015 CDS Human protein_coding chr6:150267556 chr6:150267555 stopgain 0.003 0 20 hm7G_associated_SNPs_18724 0 0 0 0 1 ULBP2 chr6:150267508 3'AG 150267508 Downstream 48bp 17614 chr17 72363805 72363805 1 + G T LUAD 72363806 + 72363786 72363826 41 TCTTGTCTCAGCCATTCCAGGTGGCTGAGGTCTCCACAGGT TCTTGTCTCAGCCATTCCATGTGGCTGAGGTCTCCACAGGT < 41bp 0.581455067805125 0.84795856010148 NA NA prediction 0.53300698459271 Functional Gain - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72363806 chr17:72363805 nonsynonymous SNV 0.011 1 20 hm7G_associated_SNPs_18725 0 0 0 0 1 GPR142 chr17:72363887 5'GT 72363887 Upstream 83bp 17615 chr7 141255319 141255319 1 + G T LUAD 141255320 + 141255300 141255340 41 TGGAAGAAAACTACAGCTGGGCTCTGCCTGCTGACCTGGGG TGGAAGAAAACTACAGCTGTGCTCTGCCTGCTGACCTGGGG < 41bp 0.596888622688105 0.863389997401991 NA NA prediction 0.533002749427772 Functional Gain - AGK ENSG00000006530 CDS Human protein_coding chr7:141255320 chr7:141255319 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_18726 0 0 1 2 2 AGK chr7:141255253 3'AG 141255253 Downstream 67bp 17616 chr7 141255319 141255319 1 + G T LUAD 141255320 + 141255300 141255340 41 TGGAAGAAAACTACAGCTGGGCTCTGCCTGCTGACCTGGGG TGGAAGAAAACTACAGCTGTGCTCTGCCTGCTGACCTGGGG < 41bp 0.596888622688105 0.863389997401991 NA NA prediction 0.533002749427772 Functional Gain - AGK ENSG00000006530 CDS Human protein_coding chr7:141255320 chr7:141255319 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_18726 0 0 1 2 2 AGK chr7:141255367 5'GT 141255367 Upstream 49bp 17617 chr4 56877595 56877595 1 + G T LUAD 56877596 + 56877576 56877616 41 AGGAAATCTCATTGGAATTGGAAGCAGCAGTGCAAGAAAAA AGGAAATCTCATTGGAATTTGAAGCAGCAGTGCAAGAAAAA < 41bp 0.462079403685136 0.766492343863784 NA NA prediction 0.532984687727569 Functional Gain - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56877596 chr4:56877595 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_18728 0 0 1 0 2 CEP135 chr4:56877578 3'AG 56877578 Downstream 18bp 17618 chr4 56877595 56877595 1 + G T LUAD 56877596 + 56877576 56877616 41 AGGAAATCTCATTGGAATTGGAAGCAGCAGTGCAAGAAAAA AGGAAATCTCATTGGAATTTGAAGCAGCAGTGCAAGAAAAA < 41bp 0.462079403685136 0.766492343863784 NA NA prediction 0.532984687727569 Functional Gain - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56877596 chr4:56877595 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_18728 0 0 1 0 2 CEP135 chr4:56877688 5'GT 56877688 Upstream 94bp 17619 chr2 220500016 220500016 1 + G T UCEC 220500017 + 220499997 220500037 41 TTCATGAGGCTGCCTACCAGGCAGATGACCGGCAAGACCTC TTCATGAGGCTGCCTACCATGCAGATGACCGGCAAGACCTC < 41bp 0.603215435034828 0.86970751560498 NA NA prediction 0.532984161140305 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220500017 chr2:220500016 nonsynonymous SNV 0.981 1 20 hm7G_associated_SNPs_18729 0 0 0 0 1 SLC4A3 chr2:220499993 3'AG 220499993 Downstream 24bp 17620 chr1 11580853 11580853 1 + G T COAD 11580854 + 11580834 11580874 41 CCAACATCCAGGTGCTGCTGGACCTCAAGTACAACCTGAGC CCAACATCCAGGTGCTGCTTGACCTCAAGTACAACCTGAGC < 41bp 0.425649992038955 0.766490336165639 NA NA prediction 0.532980672331278 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11580854 chr1:11580853 synonymous SNV . 0 20 hm7G_associated_SNPs_18730 0 0 0 0 1 DISP3 chr1:11580905 5'GT 11580905 Upstream 53bp 17621 chr17 78166339 78166339 1 + G T BLCA 78166340 + 78166320 78166360 41 ACCAGGGAGCCCTGTCCACGGGAGAAGCAGCGGCTGGTGCG ACCAGGGAGCCCTGTCCACTGGAGAAGCAGCGGCTGGTGCG < 41bp 0.610106976711128 0.876597177731315 NA NA prediction 0.532980402040373 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166340 chr17:78166339 nonsynonymous SNV 0.271 0 20 hm7G_associated_SNPs_18731 0 0 0 0 2 CARD14 chr17:78166302 3'AG 78166302 Downstream 38bp 17622 chr17 78166339 78166339 1 + G T BLCA 78166340 + 78166320 78166360 41 ACCAGGGAGCCCTGTCCACGGGAGAAGCAGCGGCTGGTGCG ACCAGGGAGCCCTGTCCACTGGAGAAGCAGCGGCTGGTGCG < 41bp 0.610106976711128 0.876597177731315 NA NA prediction 0.532980402040373 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166340 chr17:78166339 nonsynonymous SNV 0.271 0 20 hm7G_associated_SNPs_18731 0 0 0 0 2 CARD14 chr17:78166418 5'GT 78166418 Upstream 80bp 17623 chr3 39174562 39174562 1 + G T LUAD 39174563 + 39174543 39174583 41 GCCTTGGACCTCCAGTCTCGGATACTGAAGCGAGTTCCACT GCCTTGGACCTCCAGTCTCTGATACTGAAGCGAGTTCCACT < 41bp 0.589715115001031 0.856197643819457 NA NA prediction 0.532965057636853 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39174563 chr3:39174562 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_18733 0 0 0 0 1 TTC21A chr3:39174543 3'AG 39174543 Downstream 20bp 17624 chrX 22231058 22231058 1 + G T STAD 22231059 + 22231039 22231079 41 TCCAGAAGCCTTTCTTTTGGGGAACAGAATATCCTCGGTGA TCCAGAAGCCTTTCTTTTGTGGAACAGAATATCCTCGGTGA < 41bp 0.450260029692893 0.766443513553088 NA NA prediction 0.532887027106175 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22231059 chrX:22231058 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18737 0 0 0 0 2 PHEX chrX:22231021 3'AG 22231021 Downstream 38bp 17625 chrX 22231058 22231058 1 + G T STAD 22231059 + 22231039 22231079 41 TCCAGAAGCCTTTCTTTTGGGGAACAGAATATCCTCGGTGA TCCAGAAGCCTTTCTTTTGTGGAACAGAATATCCTCGGTGA < 41bp 0.450260029692893 0.766443513553088 NA NA prediction 0.532887027106175 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22231059 chrX:22231058 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18737 0 0 0 0 2 PHEX chrX:22231075 5'GT 22231075 Upstream 18bp 17626 chr6 394839 394839 1 + G T UCEC 394840 + 394820 394860 41 GGCTTGGGCACTGTTTAAAGGAAAGTTCCGAGAAGGCATCG GGCTTGGGCACTGTTTAAATGAAAGTTCCGAGAAGGCATCG < 41bp 0.585095747979814 0.851523750663358 NA NA prediction 0.532856005367088 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:394840 chr6:394839 stopgain 1.000 1 20 hm7G_associated_SNPs_18739 0 0 0 0 1 IRF4 chr6:394821 3'AG 394821 Downstream 19bp 17627 chr1 89271228 89271228 1 + G T COAD 89271229 + 89271209 89271249 41 AATATTAATATTGCCACTTGGGGAAGGCTAGTAAGAAGAGC AATATTAATATTGCCACTTTGGGAAGGCTAGTAAGAAGAGC < 41bp 0.580962992930109 0.847357160867255 NA NA prediction 0.532788335874292 Functional Gain - PKN2 ENSG00000065243 CDS Human protein_coding chr1:89271229 chr1:89271228 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18742 0 0 1 0 1 PKN2 chr1:89271180 3'AG 89271180 Downstream 49bp 17628 chr1 205495937 205495937 1 + G T LUAD 205495938 + 205495918 205495958 41 CAGTATCTGGACCACTGTGGGAACCTCATGAGCATGCACAA CAGTATCTGGACCACTGTGTGAACCTCATGAGCATGCACAA < 41bp 0.434089802061793 0.766369207887675 NA NA prediction 0.532738415775349 Functional Gain - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205495938 chr1:205495937 nonsynonymous SNV 0.764 4 20 hm7G_associated_SNPs_18745 0 0 1 1 2 CDK18 chr1:205495861 3'AG 205495861 Downstream 77bp 17629 chr1 205495937 205495937 1 + G T LUAD 205495938 + 205495918 205495958 41 CAGTATCTGGACCACTGTGGGAACCTCATGAGCATGCACAA CAGTATCTGGACCACTGTGTGAACCTCATGAGCATGCACAA < 41bp 0.434089802061793 0.766369207887675 NA NA prediction 0.532738415775349 Functional Gain - CDK18 ENSG00000117266 CDS Human protein_coding chr1:205495938 chr1:205495937 nonsynonymous SNV 0.764 4 20 hm7G_associated_SNPs_18745 0 0 1 1 2 CDK18 chr1:205495903 3'AG 205495903 Downstream 35bp 17630 chr11 125618561 125618561 1 + G T rs202055498 125618562 + 125618542 125618582 41 GCTGATGTGAAAGGCATAAGGTGGAGTGTCTATTTGGTGAA GCTGATGTGAAAGGCATAATGTGGAGTGTCTATTTGGTGAA < 41bp 0.477572624355003 0.766361175699327 NA NA prediction 0.532722351398655 Functional Gain - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125618562 chr11:125618561 nonsynonymous SNV 0.033 1 20 hm7G_associated_SNPs_18746 0 0 0 0 1 PATE1 chr11:125618495 3'AG 125618495 Downstream 67bp 17631 chr7 34889212 34889212 1 + G T LUAD 34889213 + 34889193 34889233 41 GATTCCAGAATGACGTTCCGGGAGAGAACTGAGAGGCATGA GATTCCAGAATGACGTTCCTGGAGAGAACTGAGAGGCATGA < 41bp 0.556390670669825 0.82274919607057 NA NA prediction 0.53271705080149 Functional Gain - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34889213 chr7:34889212 nonsynonymous SNV 0.190 1 20 hm7G_associated_SNPs_18748 0 0 0 0 1 NPSR1 chr7:34889177 3'AG 34889177 Downstream 36bp 17632 chr17 72436911 72436911 1 + G T UCEC 72436912 + 72436892 72436932 41 CCATCCTGAAAGAGCAGAAGGGTCAGAGCATGTTCGTGGAG CCATCCTGAAAGAGCAGAATGGTCAGAGCATGTTCGTGGAG < 41bp 0.59141232068232 0.857766730285424 NA NA prediction 0.532708819206209 Functional Gain - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72436912 chr17:72436911 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_18750 0 0 0 0 1 GPRC5C chr17:72436966 5'GT 72436966 Upstream 56bp 17633 chr16 2282320 2282320 1 + G T UCEC 2282321 + 2282301 2282341 41 TGAAGCTACTGGTGAACAAGGATGGCCGCTATGTGTGTGCG TGAAGCTACTGGTGAACAATGATGGCCGCTATGTGTGTGCG < 41bp 0.600163271968825 0.866499105406401 NA NA prediction 0.532671666875153 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2282321 chr16:2282320 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_18752 0 0 1 0 1 E4F1 chr16:2282365 5'GT 2282365 Upstream 46bp 17634 chr12 132398313 132398313 1 + G T COAD 132398314 + 132398294 132398334 41 GCTCACTGGTGGCCTCTGCGGGCTTGGAGAGCCACGGCCGG GCTCACTGGTGGCCTCTGCTGGCTTGGAGAGCCACGGCCGG < 41bp 0.421982078975157 0.766302327390138 NA NA prediction 0.532604654780276 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132398314 chr12:132398313 synonymous SNV . 0 20 hm7G_associated_SNPs_18757 0 0 1 0 1 ULK1 chr12:132398292 3'AG 132398292 Downstream 22bp 17635 chr16 20860728 20860728 1 + G T UCEC 20860729 + 20860709 20860749 41 TATTTATTGCAGCACTCATGGTTCACTCTCTGGTCTAGGAC TATTTATTGCAGCACTCATTGTTCACTCTCTGGTCTAGGAC < 41bp 0.457246351897757 0.766292998402377 NA NA prediction 0.532585996804754 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20860729 chr16:20860728 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_18760 0 0 1 0 1 REXO5 chr16:20860721 3'AG 20860721 Downstream 8bp 17636 chrX 123480562 123480562 1 + G T LUSC 123480563 + 123480543 123480583 41 GAAGCTCCTGCTTGCCACTGGGCTGGATGGCAGCTATTTGC GAAGCTCCTGCTTGCCACTTGGCTGGATGGCAGCTATTTGC < 41bp 0.575975381806825 0.842263119320553 NA NA prediction 0.532575475027455 Functional Gain - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480563 chrX:123480562 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_18761 0 0 0 2 1 SH2D1A chrX:123480629 5'GT 123480629 Upstream 68bp 17637 chr4 113571645 113571645 1 + G T UCEC 113571646 + 113571626 113571666 41 GGGAAGAGTGTCGCACCCAGGAGAAAGTTAATGCAACAGGA GGGAAGAGTGTCGCACCCATGAGAAAGTTAATGCAACAGGA < 41bp 0.586601592049371 0.852866921510205 NA NA prediction 0.532530658921667 Functional Gain - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113571646 chr4:113571645 nonsynonymous SNV 0.287 0 20 hm7G_associated_SNPs_18765 0 0 1 0 2 LARP7 chr4:113571617 3'AG 113571617 Downstream 29bp 17638 chr4 113571645 113571645 1 + G T UCEC 113571646 + 113571626 113571666 41 GGGAAGAGTGTCGCACCCAGGAGAAAGTTAATGCAACAGGA GGGAAGAGTGTCGCACCCATGAGAAAGTTAATGCAACAGGA < 41bp 0.586601592049371 0.852866921510205 NA NA prediction 0.532530658921667 Functional Gain - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113571646 chr4:113571645 nonsynonymous SNV 0.287 0 20 hm7G_associated_SNPs_18765 0 0 1 0 2 LARP7 chr4:113571738 5'GT 113571738 Upstream 94bp 17639 chr7 101176381 101176381 1 + G T LUAD 101176382 + 101176362 101176402 41 GAATGCATGAACTGCACCCGGCTCAGTGACATGAGTGAGCG GAATGCATGAACTGCACCCTGCTCAGTGACATGAGTGAGCG < 41bp 0.589388099039011 0.855628720853179 NA NA prediction 0.532481243628337 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101176382 chr7:101176381 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_18767 0 0 0 0 2 COL26A1 chr7:101176363 3'AG 101176363 Downstream 19bp 17640 chr7 101176381 101176381 1 + G T LUAD 101176382 + 101176362 101176402 41 GAATGCATGAACTGCACCCGGCTCAGTGACATGAGTGAGCG GAATGCATGAACTGCACCCTGCTCAGTGACATGAGTGAGCG < 41bp 0.589388099039011 0.855628720853179 NA NA prediction 0.532481243628337 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101176382 chr7:101176381 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_18767 0 0 0 0 2 COL26A1 chr7:101176424 5'GT 101176424 Upstream 44bp 17641 chr19 14581662 14581662 1 + G T COAD 14581663 + 14581643 14581683 41 AAGAAACAGCCCTTCTTCAGGGTGAGATTCCCCACAAGGAC AAGAAACAGCCCTTCTTCATGGTGAGATTCCCCACAAGGAC < 41bp 0.43523958041448 0.766237977399552 NA NA prediction 0.532475954799105 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14581663 chr19:14581662 nonsynonymous SNV 0.791 2 20 hm7G_associated_SNPs_18768 0 0 1 0 1 PKN1 chr19:14581583 3'AG 14581583 Downstream 80bp 17642 chr7 37988593 37988593 1 + G T LUSC 37988594 + 37988574 37988614 41 AGACCAGTACTCCATCGGGGGGCCTCAGGAGCAGATCACCG AGACCAGTACTCCATCGGGTGGCCTCAGGAGCAGATCACCG < 41bp 0.597263472922524 0.863487479216362 NA NA prediction 0.532448012587677 Functional Gain - EPDR1 ENSG00000086289 CDS Human protein_coding chr7:37988594 chr7:37988593 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_18769 0 0 1 0 1 EPDR1 chr7:37988650 5'GT 37988650 Upstream 58bp 17643 chr1 118165499 118165499 1 + G T SARC 118165500 + 118165480 118165520 41 ATCCCCTGAAGATGGCAGAGGAGAGCAGCTGTACCAGGGAT ATCCCCTGAAGATGGCAGATGAGAGCAGCTGTACCAGGGAT < 41bp 0.469550984738606 0.766223740313655 NA NA prediction 0.532447480627311 Functional Gain - FAM46C ENSG00000183508 CDS Human protein_coding chr1:118165500 chr1:118165499 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_18770 0 0 0 0 1 FAM46C chr1:118165464 3'AG 118165464 Downstream 36bp 17644 chr12 31144797 31144797 1 + G T SKCM 31144798 + 31144778 31144818 41 CTCCACCTGGCAGATCTGCGGGATGGTTCTCACCTGCTGCT CTCCACCTGGCAGATCTGCTGGATGGTTCTCACCTGCTGCT < 41bp 0.455978001321086 0.766217368766682 NA NA prediction 0.532434737533363 Functional Gain - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31144798 chr12:31144797 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_18771 0 0 0 0 1 TSPAN11 chr12:31144791 3'AG 31144791 Downstream 7bp 17645 chrX 153556267 153556267 1 + G T LUSC 153556268 + 153556248 153556288 41 CCAGTGCAAAAGCCACAGAGGGCCGGATCATTACAGTGGAG CCAGTGCAAAAGCCACAGATGGCCGGATCATTACAGTGGAG < 41bp 0.599975049382066 0.866169688267329 NA NA prediction 0.532389277770526 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153556268 chrX:153556267 nonsynonymous SNV 0.583 2 20 hm7G_associated_SNPs_18773 0 0 0 0 2 TKTL1 chrX:153556185 3'AG 153556185 Downstream 83bp 17646 chrX 153556267 153556267 1 + G T LUSC 153556268 + 153556248 153556288 41 CCAGTGCAAAAGCCACAGAGGGCCGGATCATTACAGTGGAG CCAGTGCAAAAGCCACAGATGGCCGGATCATTACAGTGGAG < 41bp 0.599975049382066 0.866169688267329 NA NA prediction 0.532389277770526 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153556268 chrX:153556267 nonsynonymous SNV 0.583 2 20 hm7G_associated_SNPs_18773 0 0 0 0 2 TKTL1 chrX:153556304 5'GT 153556304 Upstream 38bp 17647 chr3 52422839 52422839 1 + G T COAD 52422840 + 52422820 52422860 41 AGCTCATCAACGGGCTGTCGGATGAGAAGGTGCGCTGGCAG AGCTCATCAACGGGCTGTCTGATGAGAAGGTGCGCTGGCAG < 41bp 0.465652276949349 0.766191209119893 NA NA prediction 0.532382418239786 Functional Gain - DNAH1 ENSG00000114841 CDS Human protein_coding chr3:52422840 chr3:52422839 synonymous SNV . 0 20 hm7G_associated_SNPs_18774 0 0 0 0 1 DNAH1 chr3:52422822 3'AG 52422822 Downstream 18bp 17648 chr9 133573562 133573562 1 + G T LUAD 133573563 + 133573543 133573583 41 TTATAGGTTCAACAGAAGAGGTGGAAGGTGGAGACCAACTC TTATAGGTTCAACAGAAGATGTGGAAGGTGGAGACCAACTC < 41bp 0.57671449632671 0.842889657853025 NA NA prediction 0.53235032305263 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133573563 chr9:133573562 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18777 0 0 1 0 2 EXOSC2 chr9:133573549 3'AG 133573549 Downstream 14bp 17649 chr9 133573562 133573562 1 + G T LUAD 133573563 + 133573543 133573583 41 TTATAGGTTCAACAGAAGAGGTGGAAGGTGGAGACCAACTC TTATAGGTTCAACAGAAGATGTGGAAGGTGGAGACCAACTC < 41bp 0.57671449632671 0.842889657853025 NA NA prediction 0.53235032305263 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133573563 chr9:133573562 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18777 0 0 1 0 2 EXOSC2 chr9:133573638 5'GT 133573638 Upstream 77bp 17650 chrX 129059948 129059948 1 + G T LUSC 129059949 + 129059929 129059969 41 TAAAGGAAGCTTTTGCTGGGGATGATGTCATCAGAGATTTC TAAAGGAAGCTTTTGCTGGTGATGATGTCATCAGAGATTTC < 41bp 0.447326195094066 0.76617391047656 NA NA prediction 0.53234782095312 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129059949 chrX:129059948 synonymous SNV . 0 20 hm7G_associated_SNPs_18778 0 0 0 0 1 UTP14A chrX:129059895 3'AG 129059895 Downstream 54bp 17651 chr13 38924142 38924142 1 + G T SKCM 38924143 + 38924123 38924163 41 CTCTTTTCCTCAGGTCGAAGGTTTCCTTTAAGATCACGCTG CTCTTTTCCTCAGGTCGAATGTTTCCTTTAAGATCACGCTG < 41bp 0.557583246017444 0.823736837267208 NA NA prediction 0.532307182499528 Functional Gain - UFM1 ENSG00000120686 CDS Human protein_coding chr13:38924143 chr13:38924142 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_18780 0 0 1 0 1 UFM1 chr13:38924136 3'AG 38924136 Downstream 7bp 17652 chrX 36162689 36162689 1 + G T LUAD 36162690 + 36162670 36162710 41 GTTTCTAGGTGTGTCTGAGGGTGTTTCCAAAGGAGATGGAT GTTTCTAGGTGTGTCTGAGTGTGTTTCCAAAGGAGATGGAT < 41bp 0.474058922929161 0.766152716908495 NA NA prediction 0.532305433816989 Functional Gain - CFAP47 ENSG00000176034 CDS Human other chrX:36162690 chrX:36162689 nonsynonymous SNV 0.105 0 20 hm7G_associated_SNPs_18781 0 0 0 0 1 CFAP47 chrX:36162678 3'AG 36162678 Downstream 12bp 17653 chr7 134217801 134217801 1 + G T LIHC 134217802 + 134217782 134217822 41 TGATAAAGGTAATGCCATCGGTGGAAAAGCAACGTTCTTGG TGATAAAGGTAATGCCATCTGTGGAAAAGCAACGTTCTTGG < 41bp 0.455726292576704 0.766148414783055 NA NA prediction 0.53229682956611 Functional Gain - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134217802 chr7:134217801 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_18782 0 0 0 0 2 AKR1B10 chr7:134217756 3'AG 134217756 Downstream 46bp 17654 chr7 134217801 134217801 1 + G T LIHC 134217802 + 134217782 134217822 41 TGATAAAGGTAATGCCATCGGTGGAAAAGCAACGTTCTTGG TGATAAAGGTAATGCCATCTGTGGAAAAGCAACGTTCTTGG < 41bp 0.455726292576704 0.766148414783055 NA NA prediction 0.53229682956611 Functional Gain - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134217802 chr7:134217801 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_18782 0 0 0 0 2 AKR1B10 chr7:134217833 5'GT 134217833 Upstream 33bp 17655 chr17 78032414 78032414 1 + G T ESCA 78032415 + 78032395 78032435 41 TGGTAAAGAAGGCCGAGACGGAGAGGATCCGGGCAGAAATC TGGTAAAGAAGGCCGAGACTGAGAGGATCCGGGCAGAAATC < 41bp 0.431736608178765 0.766144242041925 NA NA prediction 0.532288484083851 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78032415 chr17:78032414 synonymous SNV . 0 20 hm7G_associated_SNPs_18783 0 0 1 0 1 CCDC40 chr17:78032450 5'GT 78032450 Upstream 37bp 17656 chr7 158705762 158705762 1 + G T LUSC 158705763 + 158705743 158705783 41 AAGTGTGGACCCAGCACCCGGGAGAAAGTACTGTTGTATCT AAGTGTGGACCCAGCACCCTGGAGAAAGTACTGTTGTATCT < 41bp 0.429800104020659 0.76613410329719 NA NA prediction 0.532268206594379 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158705763 chr7:158705762 synonymous SNV . 0 20 hm7G_associated_SNPs_18786 0 0 1 1 2 WDR60 chr7:158705676 3'AG 158705676 Downstream 87bp 17657 chr7 158705762 158705762 1 + G T LUSC 158705763 + 158705743 158705783 41 AAGTGTGGACCCAGCACCCGGGAGAAAGTACTGTTGTATCT AAGTGTGGACCCAGCACCCTGGAGAAAGTACTGTTGTATCT < 41bp 0.429800104020659 0.76613410329719 NA NA prediction 0.532268206594379 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158705763 chr7:158705762 synonymous SNV . 0 20 hm7G_associated_SNPs_18786 0 0 1 1 2 WDR60 chr7:158705787 5'GT 158705787 Upstream 26bp 17658 chr3 185195137 185195137 1 + G T OV 185195138 + 185195118 185195158 41 GAGATGACTCCTCAGAAGAGGAAGAAGGGGAAGTAGATAGT GAGATGACTCCTCAGAAGATGAAGAAGGGGAAGTAGATAGT < 41bp 0.572272411883746 0.838402042165947 NA NA prediction 0.532259260564402 Functional Gain - MAP3K13 ENSG00000073803 CDS Human protein_coding chr3:185195138 chr3:185195137 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18787 0 0 0 0 1 MAP3K13 chr3:185195184 5'GT 185195184 Upstream 48bp 17659 chr17 48561838 48561838 1 + G T STAD 48561839 + 48561819 48561859 41 AGCCCCAGCTGACCCTGTGGGATGTGTTTGGAGCGAACAAG AGCCCCAGCTGACCCTGTGTGATGTGTTTGGAGCGAACAAG < 41bp 0.430643854273495 0.766118876025308 NA NA prediction 0.532237752050616 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48561839 chr17:48561838 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_18788 0 0 1 0 2 RSAD1 chr17:48561803 3'AG 48561803 Downstream 36bp 17660 chr17 48561838 48561838 1 + G T STAD 48561839 + 48561819 48561859 41 AGCCCCAGCTGACCCTGTGGGATGTGTTTGGAGCGAACAAG AGCCCCAGCTGACCCTGTGTGATGTGTTTGGAGCGAACAAG < 41bp 0.430643854273495 0.766118876025308 NA NA prediction 0.532237752050616 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48561839 chr17:48561838 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_18788 0 0 1 0 2 RSAD1 chr17:48561906 5'GT 48561906 Upstream 69bp 17661 chr6 167591995 167591995 1 + G T LUAD 167591996 + 167591976 167592016 41 CACTGGAAGGCCGACTCCCGGTGCAGAAAGACGGGAGGTGT CACTGGAAGGCCGACTCCCTGTGCAGAAAGACGGGAGGTGT < 41bp 0.575465864233644 0.841580102673902 NA NA prediction 0.532228476880515 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167591996 chr6:167591995 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_18789 0 0 0 0 1 TCP10L2 chr6:167592030 5'GT 167592030 Upstream 36bp 17662 chr18 9815181 9815181 1 + G T KIRP 9815182 + 9815162 9815202 41 GTCCAGAAAACATTGTAATGGCCATCGCTGGAAACAAGTGC GTCCAGAAAACATTGTAATTGCCATCGCTGGAAACAAGTGC < 41bp 0.4368197285349 0.766114180530013 NA NA prediction 0.532228361060025 Functional Gain - RAB31 ENSG00000168461 CDS Human protein_coding chr18:9815182 chr18:9815181 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_18790 0 0 1 0 2 RAB31 chr18:9815113 3'AG 9815113 Downstream 69bp 17663 chr18 9815181 9815181 1 + G T KIRP 9815182 + 9815162 9815202 41 GTCCAGAAAACATTGTAATGGCCATCGCTGGAAACAAGTGC GTCCAGAAAACATTGTAATTGCCATCGCTGGAAACAAGTGC < 41bp 0.4368197285349 0.766114180530013 NA NA prediction 0.532228361060025 Functional Gain - RAB31 ENSG00000168461 CDS Human protein_coding chr18:9815182 chr18:9815181 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_18790 0 0 1 0 2 RAB31 chr18:9815219 5'GT 9815219 Upstream 39bp 17664 chr17 16332270 16332270 1 + G T UCEC 16332271 + 16332251 16332291 41 ACGTGGCTTCCAGCACACAGGCATCTACAGTGTCATGATCC ACGTGGCTTCCAGCACACATGCATCTACAGTGTCATGATCC < 41bp 0.60830778270727 0.874410898156737 NA NA prediction 0.532206230898933 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16332271 chr17:16332270 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_18792 0 0 1 0 1 TRPV2 chr17:16332296 5'GT 16332296 Upstream 27bp 17665 chr4 142643115 142643115 1 + G T LUAD 142643116 + 142643096 142643136 41 CCTAAAACAGAAGCCAACTGGGTGAATGTAATAAGTGATTT CCTAAAACAGAAGCCAACTTGGTGAATGTAATAAGTGATTT < 41bp 0.590190245180381 0.856291717313743 NA NA prediction 0.532202944266724 Functional Gain - IL15 ENSG00000164136 CDS Human protein_coding chr4:142643116 chr4:142643115 nonsynonymous SNV 0.506 4 20 hm7G_associated_SNPs_18793 0 0 0 5 2 IL15 chr4:142643077 3'AG 142643077 Downstream 39bp 17666 chr4 142643115 142643115 1 + G T LUAD 142643116 + 142643096 142643136 41 CCTAAAACAGAAGCCAACTGGGTGAATGTAATAAGTGATTT CCTAAAACAGAAGCCAACTTGGTGAATGTAATAAGTGATTT < 41bp 0.590190245180381 0.856291717313743 NA NA prediction 0.532202944266724 Functional Gain - IL15 ENSG00000164136 CDS Human protein_coding chr4:142643116 chr4:142643115 nonsynonymous SNV 0.506 4 20 hm7G_associated_SNPs_18793 0 0 0 5 2 IL15 chr4:142643161 5'GT 142643161 Upstream 47bp 17667 chr8 2054067 2054067 1 + G T rs566969575 2054068 + 2054048 2054088 41 TGCTGGTGTCGATGAACAAGGCAACATCTATCTGGGCTTCG TGCTGGTGTCGATGAACAATGCAACATCTATCTGGGCTTCG < 41bp 0.429853310700954 0.766093696831544 NA NA prediction 0.532187393663089 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2054068 chr8:2054067 nonsynonymous SNV 0.611 4 20 hm7G_associated_SNPs_18794 0 0 0 0 1 MYOM2 chr8:2054032 3'AG 2054032 Downstream 36bp 17668 chr14 75352289 75352289 1 + G T BRCA 75352290 + 75352270 75352310 41 GTTATTTTGTTTCTTGCAGGGGTCTCCTTATGCCAGGGACC GTTATTTTGTTTCTTGCAGTGGTCTCCTTATGCCAGGGACC < 41bp 0.434821653940466 0.766081127181663 NA NA prediction 0.532162254363326 Functional Gain - DLST ENSG00000119689 CDS Human protein_coding chr14:75352290 chr14:75352289 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18795 0 0 1 0 2 DLST chr14:75352289 3'AG 75352289 Downstream 1bp 17669 chr14 75352289 75352289 1 + G T BRCA 75352290 + 75352270 75352310 41 GTTATTTTGTTTCTTGCAGGGGTCTCCTTATGCCAGGGACC GTTATTTTGTTTCTTGCAGTGGTCTCCTTATGCCAGGGACC < 41bp 0.434821653940466 0.766081127181663 NA NA prediction 0.532162254363326 Functional Gain - DLST ENSG00000119689 CDS Human protein_coding chr14:75352290 chr14:75352289 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18795 0 0 1 0 2 DLST chr14:75352337 5'GT 75352337 Upstream 49bp 17670 chr2 223791856 223791856 1 + G T LUSC 223791857 + 223791837 223791877 41 CTGTTTCTGCTGTCCTGTTGGTCAGGGATACGGGCTCACTG CTGTTTCTGCTGTCCTGTTTGTCAGGGATACGGGCTCACTG < 41bp 0.572990160751079 0.839049504830045 NA NA prediction 0.532118688157932 Functional Gain - ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223791857 chr2:223791856 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18797 0 0 1 0 1 ACSL3 chr2:223791907 5'GT 223791907 Upstream 52bp 17671 chr8 99169904 99169904 1 + G T LUAD 99169905 + 99169885 99169925 41 CCCAGTTCTGAGGATAGTCGGGGAGGCCGGCGAGCTCCCGG CCCAGTTCTGAGGATAGTCTGGGAGGCCGGCGAGCTCCCGG < 41bp 0.587009848062049 0.853063100455488 NA NA prediction 0.532106504786879 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99169905 chr8:99169904 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_18798 0 0 1 0 1 POP1 chr8:99169845 3'AG 99169845 Downstream 60bp 17672 chr9 66457298 66457298 1 + G T UCEC 66457299 + 66457279 66457319 41 GGAAGTAGAGAAAGGGAGAGGGTGAGGGAGTTGTGGAGCGA GGAAGTAGAGAAAGGGAGATGGTGAGGGAGTTGTGGAGCGA < 41bp 0.561654623130186 0.827699579839037 NA NA prediction 0.532089913417702 Functional Gain - LINC01410 ENSG00000238113 ncRNA_exonic Human lincRNA chr9:66457299 chr9:66457298 . . 0 20 hm7G_associated_SNPs_18799 0 0 0 0 1 LINC01410 chr9:66457355 5'GT 66457355 Upstream 58bp 17673 chr16 24833408 24833408 1 + G T SARC 24833409 + 24833389 24833429 41 CTTGTTTAGGTTCCAGCTGGGGTGAGAGCAGCTCAGGGAGA CTTGTTTAGGTTCCAGCTGTGGTGAGAGCAGCTCAGGGAGA < 41bp 0.576937914285002 0.842977541805582 NA NA prediction 0.532079255041161 Functional Gain - TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24833409 chr16:24833408 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18802 0 0 1 0 2 TNRC6A chr16:24833398 3'AG 24833398 Downstream 11bp 17674 chr16 24833408 24833408 1 + G T SARC 24833409 + 24833389 24833429 41 CTTGTTTAGGTTCCAGCTGGGGTGAGAGCAGCTCAGGGAGA CTTGTTTAGGTTCCAGCTGTGGTGAGAGCAGCTCAGGGAGA < 41bp 0.576937914285002 0.842977541805582 NA NA prediction 0.532079255041161 Functional Gain - TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24833409 chr16:24833408 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18802 0 0 1 0 2 TNRC6A chr16:24833468 5'GT 24833468 Upstream 61bp 17675 chr19 53077375 53077375 1 + G T UCEC 53077376 + 53077356 53077396 41 GAGGAAAAAACACGGAAGAGGAAGAGGAAAGCAAAGGAGTC GAGGAAAAAACACGGAAGATGAAGAGGAAAGCAAAGGAGTC < 41bp 0.582186163171025 0.848218088448441 NA NA prediction 0.532063850554831 Functional Gain - ZNF701 ENSG00000167562 CDS Human protein_coding chr19:53077376 chr19:53077375 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_18804 0 0 0 0 2 ZNF701 chr19:53077330 3'AG 53077330 Downstream 46bp 17676 chr19 53077375 53077375 1 + G T UCEC 53077376 + 53077356 53077396 41 GAGGAAAAAACACGGAAGAGGAAGAGGAAAGCAAAGGAGTC GAGGAAAAAACACGGAAGATGAAGAGGAAAGCAAAGGAGTC < 41bp 0.582186163171025 0.848218088448441 NA NA prediction 0.532063850554831 Functional Gain - ZNF701 ENSG00000167562 CDS Human protein_coding chr19:53077376 chr19:53077375 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_18804 0 0 0 0 2 ZNF701 chr19:53077415 5'GT 53077415 Upstream 41bp 17677 chr3 180321070 180321070 1 + G T COAD 180321071 + 180321051 180321091 41 CATGGTGTTGATCTGTTTAGGAAGTGGTATCATGAGAGATA CATGGTGTTGATCTGTTTATGAAGTGGTATCATGAGAGATA < 41bp 0.556620235537248 0.822637449540169 NA NA prediction 0.532034428005842 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180321071 chr3:180321070 stopgain 1.000 1 20 hm7G_associated_SNPs_18806 0 0 1 0 1 TTC14 chr3:180321111 5'GT 180321111 Upstream 42bp 17678 chr16 67685845 67685845 1 + G T THCA 67685846 + 67685826 67685866 41 ACATGCGGCTATCAATCACGGGGACCTTGGCAGAGAGCATT ACATGCGGCTATCAATCACTGGGACCTTGGCAGAGAGCATT < 41bp 0.418596335220945 0.765988925191713 NA NA prediction 0.531977850383426 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685846 chr16:67685845 synonymous SNV . 0 20 hm7G_associated_SNPs_18811 0 0 0 0 2 CARMIL2 chr16:67685824 3'AG 67685824 Downstream 22bp 17679 chr16 67685845 67685845 1 + G T THCA 67685846 + 67685826 67685866 41 ACATGCGGCTATCAATCACGGGGACCTTGGCAGAGAGCATT ACATGCGGCTATCAATCACTGGGACCTTGGCAGAGAGCATT < 41bp 0.418596335220945 0.765988925191713 NA NA prediction 0.531977850383426 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685846 chr16:67685845 synonymous SNV . 0 20 hm7G_associated_SNPs_18811 0 0 0 0 2 CARMIL2 chr16:67685911 5'GT 67685911 Upstream 67bp 17680 chr3 119426373 119426373 1 + G T UCEC 119426374 + 119426354 119426394 41 GGGAATGGAAGGGACATAAGGAGAAACACAGAGAAGCCCTC GGGAATGGAAGGGACATAATGAGAAACACAGAGAAGCCCTC < 41bp 0.441480954118707 0.765962082222557 NA NA prediction 0.531924164445114 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119426374 chr3:119426373 nonsynonymous SNV 0.669 0 20 hm7G_associated_SNPs_18816 0 0 0 0 1 MAATS1 chr3:119426408 5'GT 119426408 Upstream 36bp 17681 chr1 9784449 9784449 1 + G T COAD 9784450 + 9784430 9784470 41 GTCCATGTGATTCAGCAGGGGAAGACTAATAATAGTGAGAA GTCCATGTGATTCAGCAGGTGAAGACTAATAATAGTGAGAA < 41bp 0.446020648557175 0.765938000114542 NA NA prediction 0.531876000229084 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9784450 chr1:9784449 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_18820 0 0 1 0 1 PIK3CD chr1:9784479 5'GT 9784479 Upstream 31bp 17682 chr1 213445959 213445959 1 + G T LUSC 213445960 + 213445940 213445980 41 TTTTTACCCCTGTGGATTGGGCAGAACTGATGAGATGAACG TTTTTACCCCTGTGGATTGTGCAGAACTGATGAGATGAACG < 41bp 0.469438453095534 0.765917482523681 NA NA prediction 0.531834965047362 Functional Gain - RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213445960 chr1:213445959 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18823 0 0 0 0 1 RPS6KC1 chr1:213445867 3'AG 213445867 Downstream 93bp 17683 chr11 58379208 58379208 1 + G T UCEC 58379209 + 58379189 58379229 41 GAGGATGAGGAACCTCCAAGGAAGTGAGTAGGCAATTATTA GAGGATGAGGAACCTCCAATGAAGTGAGTAGGCAATTATTA < 41bp 0.449168423567142 0.765909273148352 NA NA prediction 0.531818546296704 Functional Gain - ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58379209 chr11:58379208 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_18824 0 0 1 0 1 ZFP91 chr11:58379211 5'GT 58379211 Upstream 4bp 17684 chr5 115327891 115327891 1 + G T UCEC 115327892 + 115327872 115327912 41 AATGATATTTGATGAATCAGGATTGTTGTTGGAACCAAAAG AATGATATTTGATGAATCATGATTGTTGTTGGAACCAAAAG < 41bp 0.452056036031379 0.76590885787271 NA NA prediction 0.531817715745421 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115327892 chr5:115327891 stopgain 0.066 0 20 hm7G_associated_SNPs_18825 0 0 1 0 1 LVRN chr5:115327820 3'AG 115327820 Downstream 72bp 17685 chr4 95210632 95210632 1 + G T LGG 95210633 + 95210613 95210653 41 CTGACCTACAGGTGATGAAGGGAGTATGCCAGCAGATATAG CTGACCTACAGGTGATGAATGGAGTATGCCAGCAGATATAG < 41bp 0.550138956649628 0.816046215412483 NA NA prediction 0.531814517525709 Functional Gain - SMARCAD1 ENSG00000163104 CDS Human protein_coding chr4:95210633 chr4:95210632 nonsynonymous SNV 0.950 5 20 hm7G_associated_SNPs_18826 0 0 0 0 1 SMARCAD1 chr4:95210624 3'AG 95210624 Downstream 9bp 17686 chr1 99767377 99767377 1 + G T LUAD 99767378 + 99767358 99767398 41 ATAATCTGCGGGCTAACACGGATAACTCAGTATAAGAACCA ATAATCTGCGGGCTAACACTGATAACTCAGTATAAGAACCA < 41bp 0.448798310591681 0.765905964032955 NA NA prediction 0.531811928065909 Functional Gain - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99767378 chr1:99767377 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18827 0 0 0 0 2 PLPPR4 chr1:99767280 3'AG 99767280 Downstream 98bp 17687 chr1 99767377 99767377 1 + G T LUAD 99767378 + 99767358 99767398 41 ATAATCTGCGGGCTAACACGGATAACTCAGTATAAGAACCA ATAATCTGCGGGCTAACACTGATAACTCAGTATAAGAACCA < 41bp 0.448798310591681 0.765905964032955 NA NA prediction 0.531811928065909 Functional Gain - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99767378 chr1:99767377 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18827 0 0 0 0 2 PLPPR4 chr1:99767453 5'GT 99767453 Upstream 77bp 17688 chr11 121035989 121035989 1 + G T LUSC 121035990 + 121035970 121036010 41 TTTTCTTTTTAGCAGGAGTGGTTGAAGATCCCTGTGTGGGG TTTTCTTTTTAGCAGGAGTTGTTGAAGATCCCTGTGTGGGG < 41bp 0.459228031561822 0.765896598039381 NA NA prediction 0.531793196078761 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121035990 chr11:121035989 synonymous SNV . 0 20 hm7G_associated_SNPs_18828 0 0 0 0 1 TECTA chr11:121035982 3'AG 121035982 Downstream 8bp 17689 chr5 161999 161999 1 + G T GBM 162000 + 161980 162020 41 TGAGCGCCGTGGTCAGCCAGGCTGAGTGCAGGGAGGGAGAG TGAGCGCCGTGGTCAGCCATGCTGAGTGCAGGGAGGGAGAG < 41bp 0.610530550545091 0.876416652807432 NA NA prediction 0.531772204524684 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:162000 chr5:161999 nonsynonymous SNV 0.121 2 20 hm7G_associated_SNPs_18830 0 0 0 0 1 PLEKHG4B chr5:162059 5'GT 162059 Upstream 61bp 17690 chr22 45929726 45929726 1 + G T LUAD 45929727 + 45929707 45929747 41 GCTCTTTCCGCTGCCAGCGGGACAGCAGCTGCGGGACTGGC GCTCTTTCCGCTGCCAGCGTGACAGCAGCTGCGGGACTGGC < 41bp 0.607454940274621 0.873322926984935 NA NA prediction 0.531735973420627 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929727 chr22:45929726 synonymous SNV . 0 20 hm7G_associated_SNPs_18832 0 0 1 0 2 FBLN1 chr22:45929641 3'AG 45929641 Downstream 86bp 17691 chr22 45929726 45929726 1 + G T LUAD 45929727 + 45929707 45929747 41 GCTCTTTCCGCTGCCAGCGGGACAGCAGCTGCGGGACTGGC GCTCTTTCCGCTGCCAGCGTGACAGCAGCTGCGGGACTGGC < 41bp 0.607454940274621 0.873322926984935 NA NA prediction 0.531735973420627 Functional Gain - FBLN1 ENSG00000077942 CDS Human protein_coding chr22:45929727 chr22:45929726 synonymous SNV . 0 20 hm7G_associated_SNPs_18832 0 0 1 0 2 FBLN1 chr22:45929778 5'GT 45929778 Upstream 53bp 17692 chr2 179201129 179201129 1 + G T UCEC 179201130 + 179201110 179201150 41 AAGTGGCAGCCTGGTTACAGGACTCGGAAGAGATGGACAGG AAGTGGCAGCCTGGTTACATGACTCGGAAGAGATGGACAGG < 41bp 0.591228086328069 0.857084811976553 NA NA prediction 0.531713451296967 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179201130 chr2:179201129 nonsynonymous SNV 0.975 2 20 hm7G_associated_SNPs_18833 0 0 0 0 1 OSBPL6 chr2:179201160 5'GT 179201160 Upstream 32bp 17693 chr1 168034950 168034950 1 + G T LUAD 168034951 + 168034931 168034971 41 TGGAAGCTGATAATCATGTGGTAAACTGCCTGCAGCCACAT TGGAAGCTGATAATCATGTTGTAAACTGCCTGCAGCCACAT < 41bp 0.441897407278975 0.765851999956073 NA NA prediction 0.531703999912146 Functional Gain - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168034951 chr1:168034950 synonymous SNV . 0 20 hm7G_associated_SNPs_18834 0 0 1 0 1 DCAF6 chr1:168034984 5'GT 168034984 Upstream 35bp 17694 chr3 52021460 52021460 1 + G T LUAD 52021461 + 52021441 52021481 41 TCCGTGTGGCACCGGATGTGGACTTCAAGGTGCCACCTCCA TCCGTGTGGCACCGGATGTTGACTTCAAGGTGCCACCTCCA < 41bp 0.600523762490545 0.866374436765866 NA NA prediction 0.531701348550642 Functional Gain - ABHD14A-ACY1;ACY1 ENSG00000114786;ENSG00000243989 CDS Human other chr3:52021461 chr3:52021460 synonymous SNV . 0 20 hm7G_associated_SNPs_18835 0 0 1 0 1 ABHD14A-ACY1;ACY1 chr3:52021469 5'GT 52021469 Upstream 10bp 17695 chr12 102021559 102021559 1 + G T ESCA 102021560 + 102021540 102021580 41 CTTTCAGGTTTGGGTAGTCGGGCCCTGGAGAGAAAAGATTC CTTTCAGGTTTGGGTAGTCTGGCCCTGGAGAGAAAAGATTC < 41bp 0.458023302862408 0.765843711027045 NA NA prediction 0.531687422054091 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102021560 chr12:102021559 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_18837 0 0 0 0 2 MYBPC1 chr12:102021547 3'AG 102021547 Downstream 13bp 17696 chr12 102021559 102021559 1 + G T ESCA 102021560 + 102021540 102021580 41 CTTTCAGGTTTGGGTAGTCGGGCCCTGGAGAGAAAAGATTC CTTTCAGGTTTGGGTAGTCTGGCCCTGGAGAGAAAAGATTC < 41bp 0.458023302862408 0.765843711027045 NA NA prediction 0.531687422054091 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102021560 chr12:102021559 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_18837 0 0 0 0 2 MYBPC1 chr12:102021582 5'GT 102021582 Upstream 24bp 17697 chr11 48166669 48166669 1 + G T UCEC 48166670 + 48166650 48166690 41 ATGCTGTTTCCTTGCCCCAGGATCCAGGTAGGGAGAAGACA ATGCTGTTTCCTTGCCCCATGATCCAGGTAGGGAGAAGACA < 41bp 0.595920351433693 0.861757194403567 NA NA prediction 0.531673685939746 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48166670 chr11:48166669 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18838 0 0 0 0 1 PTPRJ chr11:48166676 5'GT 48166676 Upstream 8bp 17698 chr10 60996263 60996263 1 + G T LUSC 60996264 + 60996244 60996284 41 ATGTTCCCACAAAATTGGTGGCAAAAGCTGTTCCCTTGCCT ATGTTCCCACAAAATTGGTTGCAAAAGCTGTTCCCTTGCCT < 41bp 0.443513290763186 0.765829096930945 NA NA prediction 0.53165819386189 Functional Gain - PHYHIPL ENSG00000165443 CDS Human protein_coding chr10:60996264 chr10:60996263 synonymous SNV . 0 20 hm7G_associated_SNPs_18839 0 0 1 0 1 PHYHIPL chr10:60996243 3'AG 60996243 Downstream 21bp 17699 chr16 77859146 77859146 1 + G T UCEC 77859147 + 77859127 77859167 41 GTTTCCCCATGCCCAGATTGGAGACCGTGTCATGGCATTTG GTTTCCCCATGCCCAGATTTGAGACCGTGTCATGGCATTTG < 41bp 0.440474185561215 0.765825502763504 NA NA prediction 0.531651005527009 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77859147 chr16:77859146 stopgain 0.981 1 20 hm7G_associated_SNPs_18840 0 0 0 0 1 VAT1L chr16:77859143 3'AG 77859143 Downstream 4bp 17700 chr7 142564781 142564781 1 + G T LUAD 142564782 + 142564762 142564802 41 CCGGACTGCTGCCGGCCACGGCCCCTACGGGGGCAAAGTCT CCGGACTGCTGCCGGCCACTGCCCCTACGGGGGCAAAGTCT < 41bp 0.612420924264497 0.878245798114223 NA NA prediction 0.531649747699453 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564782 chr7:142564781 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_18841 0 0 0 0 2 EPHB6 chr7:142564696 3'AG 142564696 Downstream 86bp 17701 chr7 142564781 142564781 1 + G T LUAD 142564782 + 142564762 142564802 41 CCGGACTGCTGCCGGCCACGGCCCCTACGGGGGCAAAGTCT CCGGACTGCTGCCGGCCACTGCCCCTACGGGGGCAAAGTCT < 41bp 0.612420924264497 0.878245798114223 NA NA prediction 0.531649747699453 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564782 chr7:142564781 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_18841 0 0 0 0 2 EPHB6 chr7:142564823 5'GT 142564823 Upstream 43bp 17702 chr19 50939282 50939282 1 + G T KIRP 50939283 + 50939263 50939303 41 ATGTAGGGAAGGACGCAGTGGTCGTGGCCAAGGTGAACGGG ATGTAGGGAAGGACGCAGTTGTCGTGGCCAAGGTGAACGGG < 41bp 0.432014346718817 0.765791675255192 NA NA prediction 0.531583350510385 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939283 chr19:50939282 synonymous SNV . 0 20 hm7G_associated_SNPs_18847 0 0 0 0 1 MYBPC2 chr19:50939269 3'AG 50939269 Downstream 14bp 17703 chr1 53308618 53308618 1 + G T UCEC 53308619 + 53308599 53308639 41 TCCCTCCTGACGCTCAGAAGGATGCCCTGGGCTGCTGCGTG TCCCTCCTGACGCTCAGAATGATGCCCTGGGCTGCTGCGTG < 41bp 0.578716767174528 0.844500499012689 NA NA prediction 0.531567463676323 Functional Gain - ZYG11A ENSG00000203995 CDS Human protein_coding chr1:53308619 chr1:53308618 nonsynonymous SNV 0.928 1 20 hm7G_associated_SNPs_18848 0 0 1 0 1 ZYG11A chr1:53308645 5'GT 53308645 Upstream 28bp 17704 chr1 183203558 183203558 1 + G T UCEC 183203559 + 183203539 183203579 41 GCTTTAAAAGTCTGGCTCAGGAGGCCACAAGATTAGCAGAA GCTTTAAAAGTCTGGCTCATGAGGCCACAAGATTAGCAGAA < 41bp 0.437194144651489 0.765766187488966 NA NA prediction 0.531532374977931 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183203559 chr1:183203558 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_18850 0 0 0 0 2 LAMC2 chr1:183203502 3'AG 183203502 Downstream 57bp 17705 chr1 183203558 183203558 1 + G T UCEC 183203559 + 183203539 183203579 41 GCTTTAAAAGTCTGGCTCAGGAGGCCACAAGATTAGCAGAA GCTTTAAAAGTCTGGCTCATGAGGCCACAAGATTAGCAGAA < 41bp 0.437194144651489 0.765766187488966 NA NA prediction 0.531532374977931 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183203559 chr1:183203558 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_18850 0 0 0 0 2 LAMC2 chr1:183203581 5'GT 183203581 Upstream 24bp 17706 chr13 114188499 114188499 1 + G T SARC 114188500 + 114188480 114188520 41 GCTGCACATGGAAAGCAAGGGGAACAAAGAAATCCTGATCT GCTGCACATGGAAAGCAAGTGGAACAAAGAAATCCTGATCT < 41bp 0.589703706493061 0.855456369982234 NA NA prediction 0.531505326978347 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114188500 chr13:114188499 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_18852 0 0 0 0 1 TMCO3 chr13:114188555 5'GT 114188555 Upstream 57bp 17707 chr4 659058 659058 1 + G T UCEC 659059 + 659039 659079 41 TCCAGGTCGCACTTCTCGTGGCTGCTGAGTTCTGGGAGCAA TCCAGGTCGCACTTCTCGTTGCTGCTGAGTTCTGGGAGCAA < 41bp 0.608544899067155 0.874297100185603 NA NA prediction 0.531504402236896 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:659059 chr4:659058 synonymous SNV . 0 20 hm7G_associated_SNPs_18854 0 0 0 0 2 PDE6B chr4:659044 3'AG 659044 Downstream 15bp 17708 chr4 659058 659058 1 + G T UCEC 659059 + 659039 659079 41 TCCAGGTCGCACTTCTCGTGGCTGCTGAGTTCTGGGAGCAA TCCAGGTCGCACTTCTCGTTGCTGCTGAGTTCTGGGAGCAA < 41bp 0.608544899067155 0.874297100185603 NA NA prediction 0.531504402236896 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:659059 chr4:659058 synonymous SNV . 0 20 hm7G_associated_SNPs_18854 0 0 0 0 2 PDE6B chr4:659118 5'GT 659118 Upstream 61bp 17709 chr9 138439035 138439035 1 + G T LUAD 138439036 + 138439016 138439056 41 TTTTCCAGGAGGGAGGATCGGTGCATCCAGAAGAAAATCCT TTTTCCAGGAGGGAGGATCTGTGCATCCAGAAGAAAATCCT < 41bp 0.460312985385322 0.765744675670374 NA NA prediction 0.531489351340747 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439036 chr9:138439035 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_18855 0 0 0 0 2 OBP2A chr9:138439024 3'AG 138439024 Downstream 12bp 17710 chr9 138439035 138439035 1 + G T LUAD 138439036 + 138439016 138439056 41 TTTTCCAGGAGGGAGGATCGGTGCATCCAGAAGAAAATCCT TTTTCCAGGAGGGAGGATCTGTGCATCCAGAAGAAAATCCT < 41bp 0.460312985385322 0.765744675670374 NA NA prediction 0.531489351340747 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439036 chr9:138439035 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_18855 0 0 0 0 2 OBP2A chr9:138439094 5'GT 138439094 Upstream 60bp 17711 chr11 63668456 63668456 1 + G T THCA 63668457 + 63668437 63668477 41 GTGTCCATGGGTTATACACGGGAAGAGATCCAGGACTCGCT GTGTCCATGGGTTATACACTGGAAGAGATCCAGGACTCGCT < 41bp 0.607487990146186 0.873230855434139 NA NA prediction 0.531485730575906 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668457 chr11:63668456 nonsynonymous SNV 0.675 0 20 hm7G_associated_SNPs_18856 0 0 1 0 2 MARK2 chr11:63668429 3'AG 63668429 Downstream 28bp 17712 chr11 63668456 63668456 1 + G T THCA 63668457 + 63668437 63668477 41 GTGTCCATGGGTTATACACGGGAAGAGATCCAGGACTCGCT GTGTCCATGGGTTATACACTGGAAGAGATCCAGGACTCGCT < 41bp 0.607487990146186 0.873230855434139 NA NA prediction 0.531485730575906 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668457 chr11:63668456 nonsynonymous SNV 0.675 0 20 hm7G_associated_SNPs_18856 0 0 1 0 2 MARK2 chr11:63668541 5'GT 63668541 Upstream 86bp 17713 chr14 59112029 59112029 1 + G T COAD 59112030 + 59112010 59112050 41 CTGTGAAGACCAGGCCTCAGGGGCAGTTTGCCGTTCCCTCT CTGTGAAGACCAGGCCTCATGGGCAGTTTGCCGTTCCCTCT < 41bp 0.438351495743597 0.76571169807756 NA NA prediction 0.53142339615512 Functional Gain - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59112030 chr14:59112029 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18859 0 0 0 0 1 DACT1 chr14:59111976 3'AG 59111976 Downstream 54bp 17714 chr19 51830413 51830413 1 + G T LUSC 51830414 + 51830394 51830434 41 TGCGCTGCGAAGCCATGGCGGTTCCCCCCGCGGATTTCCAG TGCGCTGCGAAGCCATGGCTGTTCCCCCCGCGGATTTCCAG < 41bp 0.430872162606576 0.765706051757192 NA NA prediction 0.531412103514384 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51830414 chr19:51830413 synonymous SNV . 0 20 hm7G_associated_SNPs_18860 0 0 0 0 2 IGLON5 chr19:51830334 3'AG 51830334 Downstream 80bp 17715 chr19 51830413 51830413 1 + G T LUSC 51830414 + 51830394 51830434 41 TGCGCTGCGAAGCCATGGCGGTTCCCCCCGCGGATTTCCAG TGCGCTGCGAAGCCATGGCTGTTCCCCCCGCGGATTTCCAG < 41bp 0.430872162606576 0.765706051757192 NA NA prediction 0.531412103514384 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51830414 chr19:51830413 synonymous SNV . 0 20 hm7G_associated_SNPs_18860 0 0 0 0 2 IGLON5 chr19:51830454 5'GT 51830454 Upstream 42bp 17716 chr11 89882210 89882210 1 + G T LUAD 89882211 + 89882191 89882231 41 CCTTGAACCACCACCAGATGGCTATGAGAATGTTACAAATA CCTTGAACCACCACCAGATTGCTATGAGAATGTTACAAATA < 41bp 0.591891275491651 0.857584694752135 NA NA prediction 0.531386838520968 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89882211 chr11:89882210 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18862 0 0 0 0 2 NAALAD2 chr11:89882174 3'AG 89882174 Downstream 37bp 17717 chr11 89882210 89882210 1 + G T LUAD 89882211 + 89882191 89882231 41 CCTTGAACCACCACCAGATGGCTATGAGAATGTTACAAATA CCTTGAACCACCACCAGATTGCTATGAGAATGTTACAAATA < 41bp 0.591891275491651 0.857584694752135 NA NA prediction 0.531386838520968 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89882211 chr11:89882210 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_18862 0 0 0 0 2 NAALAD2 chr11:89882275 5'GT 89882275 Upstream 66bp 17718 chr11 93806216 93806216 1 + G T LUSC 93806217 + 93806197 93806237 41 TGATCTCTACTTCACACAAGGGGACAACAGAATAGGAGGAA TGATCTCTACTTCACACAATGGGACAACAGAATAGGAGGAA < 41bp 0.586638139495944 0.852314963153383 NA NA prediction 0.531353647314877 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93806217 chr11:93806216 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_18865 0 0 0 0 1 HEPHL1 chr11:93806191 3'AG 93806191 Downstream 26bp 17719 chr6 160222163 160222163 1 + G T STAD 160222164 + 160222144 160222184 41 GTCTTTTTGATTTGCCATCGGAGTGGTATCTAAAGACCCGT GTCTTTTTGATTTGCCATCTGAGTGGTATCTAAAGACCCGT < 41bp 0.581500784820266 0.847161004476829 NA NA prediction 0.531320439313126 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160222164 chr6:160222163 synonymous SNV . 0 20 hm7G_associated_SNPs_18868 0 0 0 0 2 PNLDC1 chr6:160222145 3'AG 160222145 Downstream 19bp 17720 chr6 160222163 160222163 1 + G T STAD 160222164 + 160222144 160222184 41 GTCTTTTTGATTTGCCATCGGAGTGGTATCTAAAGACCCGT GTCTTTTTGATTTGCCATCTGAGTGGTATCTAAAGACCCGT < 41bp 0.581500784820266 0.847161004476829 NA NA prediction 0.531320439313126 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160222164 chr6:160222163 synonymous SNV . 0 20 hm7G_associated_SNPs_18868 0 0 0 0 2 PNLDC1 chr6:160222218 5'GT 160222218 Upstream 56bp 17721 chr3 180679280 180679280 1 + G T LGG 180679281 + 180679261 180679301 41 GGTTCCATTTGTATTTGTTGGCACTAAAGAAAGCATTGGAA GGTTCCATTTGTATTTGTTTGCACTAAAGAAAGCATTGGAA < 41bp 0.455574754067798 0.765648303685068 NA NA prediction 0.531296607370135 Functional Gain - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180679281 chr3:180679280 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18869 0 0 1 0 1 FXR1 chr3:180679342 5'GT 180679342 Upstream 63bp 17722 chr6 170155383 170155383 1 + G T THCA 170155384 + 170155364 170155404 41 TTCTTATCCTTTAAGAGCAGGGTCTGGATTACTGGGGAAGC TTCTTATCCTTTAAGAGCATGGTCTGGATTACTGGGGAAGC < 41bp 0.562131953550784 0.827779334256935 NA NA prediction 0.531294761412301 Functional Gain - ERMARD ENSG00000130023;ENSG00000130023 exonic;splicing Human protein_coding chr6:170155384 chr6:170155383 nonsynonymous SNV 0.026 0 20 hm7G_associated_SNPs_18871 0 0 1 0 1 ERMARD chr6:170155379 3'AG 170155379 Downstream 5bp 17723 chr12 101873459 101873459 1 + G T UCEC 101873460 + 101873440 101873480 41 GAGGAGCCTGTCTATAATTGGAGAACGGTAATTGTAAGTAT GAGGAGCCTGTCTATAATTTGAGAACGGTAATTGTAAGTAT < 41bp 0.463846672063361 0.765625598461624 NA NA prediction 0.531251196923248 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101873460 chr12:101873459 nonsynonymous SNV 0.533 4 20 hm7G_associated_SNPs_18873 0 0 0 0 2 SPIC chr12:101873360 3'AG 101873360 Downstream 100bp 17724 chr12 101873459 101873459 1 + G T UCEC 101873460 + 101873440 101873480 41 GAGGAGCCTGTCTATAATTGGAGAACGGTAATTGTAAGTAT GAGGAGCCTGTCTATAATTTGAGAACGGTAATTGTAAGTAT < 41bp 0.463846672063361 0.765625598461624 NA NA prediction 0.531251196923248 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101873460 chr12:101873459 nonsynonymous SNV 0.533 4 20 hm7G_associated_SNPs_18873 0 0 0 0 2 SPIC chr12:101873472 5'GT 101873472 Upstream 14bp 17725 chr1 171227229 171227229 1 + G T LUSC 171227230 + 171227210 171227250 41 TCCTCATGCAGGAGAACATGGCCAAGCGAGTTGCCATTGTG TCCTCATGCAGGAGAACATTGCCAAGCGAGTTGCCATTGTG < 41bp 0.594360730947796 0.859970016292767 NA NA prediction 0.531218570689941 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171227230 chr1:171227229 nonsynonymous SNV 0.208 4 20 hm7G_associated_SNPs_18874 0 0 0 0 1 FMO1 chr1:171227221 3'AG 171227221 Downstream 9bp 17726 chr5 14610348 14610348 1 + G T UCEC 14610349 + 14610329 14610369 41 TTGAAGTCTGCTACCCAGAGGAGCCTCTCAGGGACTGGCCG TTGAAGTCTGCTACCCAGATGAGCCTCTCAGGGACTGGCCG < 41bp 0.465772427542417 0.765576614008295 NA NA prediction 0.53115322801659 Functional Gain - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14610349 chr5:14610348 nonsynonymous SNV 0.956 0 20 hm7G_associated_SNPs_18878 0 0 1 0 1 FAM105A chr5:14610250 3'AG 14610250 Downstream 99bp 17727 chr19 37726576 37726576 1 + G T UCEC 37726577 + 37726557 37726597 41 ACGGCAATCTGGTTTCAATGGGTAAGGGCATCTGTACCAGT ACGGCAATCTGGTTTCAATTGGTAAGGGCATCTGTACCAGT < 41bp 0.526766376905116 0.792338600136224 NA NA prediction 0.531144446462215 Functional Gain - ZNF383 ENSG00000188283 CDS Human protein_coding chr19:37726577 chr19:37726576 nonsynonymous SNV 0.845 0 20 hm7G_associated_SNPs_18879 0 0 0 0 1 ZNF383 chr19:37726577 5'GT 37726577 Upstream 2bp 17728 chr1 203025516 203025516 1 + G T LUAD 203025517 + 203025497 203025537 41 GTTCAGTCGCCAGTGTCTCGGGAAGAGAACCGAGAGGATAA GTTCAGTCGCCAGTGTCTCTGGAAGAGAACCGAGAGGATAA < 41bp 0.595962319202557 0.861533101045919 NA NA prediction 0.531141563686724 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203025517 chr1:203025516 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_18880 0 0 0 0 1 PPFIA4 chr1:203025503 3'AG 203025503 Downstream 14bp 17729 chr14 71137824 71137824 1 + G T CESC 71137825 + 71137805 71137845 41 TTCGGTATATCCAGCTGACGGAGATGAAACTCAGCCGATGC TTCGGTATATCCAGCTGACTGAGATGAAACTCAGCCGATGC < 41bp 0.556009731948266 0.821578489062588 NA NA prediction 0.531137514228644 Functional Gain - TTC9 ENSG00000133985 CDS Human protein_coding chr14:71137825 chr14:71137824 synonymous SNV . 0 20 hm7G_associated_SNPs_18881 0 0 0 0 1 TTC9 chr14:71137793 3'AG 71137793 Downstream 32bp 17730 chr5 55111207 55111207 1 + G T SARC 55111208 + 55111188 55111228 41 ATACATTCCTGGCTTCAGTGGTAGTACAAGAGGAAACGTGT ATACATTCCTGGCTTCAGTTGTAGTACAAGAGGAAACGTGT < 41bp 0.567304793629242 0.832858539444502 NA NA prediction 0.531107491630521 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55111208 chr5:55111207 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_18883 0 0 0 0 2 DDX4 chr5:55111141 3'AG 55111141 Downstream 67bp 17731 chr5 55111207 55111207 1 + G T SARC 55111208 + 55111188 55111228 41 ATACATTCCTGGCTTCAGTGGTAGTACAAGAGGAAACGTGT ATACATTCCTGGCTTCAGTTGTAGTACAAGAGGAAACGTGT < 41bp 0.567304793629242 0.832858539444502 NA NA prediction 0.531107491630521 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55111208 chr5:55111207 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_18883 0 0 0 0 2 DDX4 chr5:55111251 5'GT 55111251 Upstream 45bp 17732 chr9 136319630 136319630 1 + G T STAD 136319631 + 136319611 136319651 41 TGCAGCTCGACCAAGGCCAGGACGTGGAGGTGGACGAGGCG TGCAGCTCGACCAAGGCCATGACGTGGAGGTGGACGAGGCG < 41bp 0.441305764269312 0.765546384634996 NA NA prediction 0.531092769269992 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136319631 chr9:136319630 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_18884 0 0 0 0 1 ADAMTS13 chr9:136319537 3'AG 136319537 Downstream 94bp 17733 chr17 72322494 72322494 1 + G T UCEC 72322495 + 72322475 72322515 41 CACCTGCTGCAATCATGAAGGACAGCGGGGACTCCAAGGAC CACCTGCTGCAATCATGAATGACAGCGGGGACTCCAAGGAC < 41bp 0.447531459395554 0.765543386763436 NA NA prediction 0.531086773526871 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72322495 chr17:72322494 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18885 0 0 0 0 1 KIF19 chr17:72322527 5'GT 72322527 Upstream 34bp 17734 chr16 3363108 3363108 1 + G T UCEC 3363109 + 3363089 3363129 41 AGGAAGAATGGGAGTTATTGGATCCCACTCAGAAGGCCCTC AGGAAGAATGGGAGTTATTTGATCCCACTCAGAAGGCCCTC < 41bp 0.584903069240189 0.850445565203024 NA NA prediction 0.531084991925669 Functional Gain - ZNF75A ENSG00000162086 CDS Human protein_coding chr16:3363109 chr16:3363108 nonsynonymous SNV 0.966 2 20 hm7G_associated_SNPs_18886 0 0 0 0 2 ZNF75A chr16:3363049 3'AG 3363049 Downstream 60bp 17735 chr16 3363108 3363108 1 + G T UCEC 3363109 + 3363089 3363129 41 AGGAAGAATGGGAGTTATTGGATCCCACTCAGAAGGCCCTC AGGAAGAATGGGAGTTATTTGATCCCACTCAGAAGGCCCTC < 41bp 0.584903069240189 0.850445565203024 NA NA prediction 0.531084991925669 Functional Gain - ZNF75A ENSG00000162086 CDS Human protein_coding chr16:3363109 chr16:3363108 nonsynonymous SNV 0.966 2 20 hm7G_associated_SNPs_18886 0 0 0 0 2 ZNF75A chr16:3363175 5'GT 3363175 Upstream 68bp 17736 chr15 57967210 57967210 1 + G T SKCM 57967211 + 57967191 57967231 41 ACTATTTAACAGAAACCCAGGCCAAGACTGAAGTGGAAACC ACTATTTAACAGAAACCCATGCCAAGACTGAAGTGGAAACC < 41bp 0.586348501054947 0.851866078412865 NA NA prediction 0.531035154715837 Functional Gain - GCOM1;MYZAP ENSG00000137878;ENSG00000263155 CDS Human other chr15:57967211 chr15:57967210 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_18889 0 0 0 0 1 GCOM1;MYZAP chr15:57967266 5'GT 57967266 Upstream 57bp 17737 chr12 97313800 97313800 1 + G T SARC 97313801 + 97313781 97313821 41 ACTTGTGTAACATACAATTGGAATGATTGCTACATTGCTTC ACTTGTGTAACATACAATTTGAATGATTGCTACATTGCTTC < 41bp 0.452903446998623 0.765511270206625 NA NA prediction 0.53102254041325 Functional Gain - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97313801 chr12:97313800 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_18891 0 0 1 0 1 NEDD1 chr12:97313763 3'AG 97313763 Downstream 38bp 17738 chr12 109286769 109286769 1 + G T COAD 109286770 + 109286750 109286790 41 CATCCCAGGTTAACTGAGAGGGGAGTGAAGTTCTTCCAGCG CATCCCAGGTTAACTGAGATGGGAGTGAAGTTCTTCCAGCG < 41bp 0.439132854830979 0.765492325087631 NA NA prediction 0.530984650175262 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109286770 chr12:109286769 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_18892 0 0 0 0 2 DAO chr12:109286758 3'AG 109286758 Downstream 12bp 17739 chr12 109286769 109286769 1 + G T COAD 109286770 + 109286750 109286790 41 CATCCCAGGTTAACTGAGAGGGGAGTGAAGTTCTTCCAGCG CATCCCAGGTTAACTGAGATGGGAGTGAAGTTCTTCCAGCG < 41bp 0.439132854830979 0.765492325087631 NA NA prediction 0.530984650175262 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109286770 chr12:109286769 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_18892 0 0 0 0 2 DAO chr12:109286812 5'GT 109286812 Upstream 44bp 17740 chr4 159165492 159165492 1 + G T CHOL 159165493 + 159165473 159165513 41 GGGGTATCTTCATGTTTAAGGAAATAAAGGTATGTACAAGA GGGGTATCTTCATGTTTAATGAAATAAAGGTATGTACAAGA < 41bp 0.460750219672821 0.765482173642675 NA NA prediction 0.53096434728535 Functional Gain - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159165493 chr4:159165492 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18893 0 0 0 0 1 TMEM144 chr4:159165501 5'GT 159165501 Upstream 10bp 17741 chr3 184105733 184105733 1 + G T COAD 184105734 + 184105714 184105754 41 TACAGGGGGGCACTGGAGAGGTGCACTGTGAGAAGGTGCAG TACAGGGGGGCACTGGAGATGTGCACTGTGAGAAGGTGCAG < 41bp 0.592272912148496 0.857742300556998 NA NA prediction 0.530938776817004 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184105734 chr3:184105733 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18894 0 0 1 0 2 CHRD chr3:184105719 3'AG 184105719 Downstream 15bp 17742 chr3 184105733 184105733 1 + G T COAD 184105734 + 184105714 184105754 41 TACAGGGGGGCACTGGAGAGGTGCACTGTGAGAAGGTGCAG TACAGGGGGGCACTGGAGATGTGCACTGTGAGAAGGTGCAG < 41bp 0.592272912148496 0.857742300556998 NA NA prediction 0.530938776817004 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184105734 chr3:184105733 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18894 0 0 1 0 2 CHRD chr3:184105821 5'GT 184105821 Upstream 89bp 17743 chr19 16791295 16791295 1 + G T UCEC 16791296 + 16791276 16791316 41 TCTTCGTGGCCATGAAGGAGGTGGTGCGAGTCCGCAAGATC TCTTCGTGGCCATGAAGGATGTGGTGCGAGTCCGCAAGATC < 41bp 0.600352228975999 0.865796804169771 NA NA prediction 0.530889150387544 Functional Gain - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16791296 chr19:16791295 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18895 0 0 1 0 2 TMEM38A chr19:16791208 3'AG 16791208 Downstream 88bp 17744 chr19 16791295 16791295 1 + G T UCEC 16791296 + 16791276 16791316 41 TCTTCGTGGCCATGAAGGAGGTGGTGCGAGTCCGCAAGATC TCTTCGTGGCCATGAAGGATGTGGTGCGAGTCCGCAAGATC < 41bp 0.600352228975999 0.865796804169771 NA NA prediction 0.530889150387544 Functional Gain - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16791296 chr19:16791295 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18895 0 0 1 0 2 TMEM38A chr19:16791392 5'GT 16791392 Upstream 98bp 17745 chr5 893185 893185 1 + G T BLCA 893186 + 893166 893206 41 CGCCAACGGTCCACGTGGAGGTGCATCAGCGCGGCAGCAGG CGCCAACGGTCCACGTGGATGTGCATCAGCGCGGCAGCAGG < 41bp 0.576862138735181 0.842285421546365 NA NA prediction 0.530846565622368 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:893186 chr5:893185 nonsynonymous SNV 0.909 3 20 hm7G_associated_SNPs_18898 0 0 1 0 1 TRIP13 chr5:893205 5'GT 893205 Upstream 21bp 17746 chr2 220437321 220437321 1 + G T UCEC 220437322 + 220437302 220437342 41 ACAGGGGCTCTGAGCCCGAGGAAGAGGAGGATGTCTCCCAA ACAGGGGCTCTGAGCCCGATGAAGAGGAGGATGTCTCCCAA < 41bp 0.595226952054868 0.860640189706507 NA NA prediction 0.530826475303278 Functional Gain - INHA ENSG00000123999 CDS Human protein_coding chr2:220437322 chr2:220437321 nonsynonymous SNV 0.245 1 20 hm7G_associated_SNPs_18901 0 0 0 0 1 INHA chr2:220437364 5'GT 220437364 Upstream 44bp 17747 chr9 119094669 119094669 1 + G T BLCA 119094670 + 119094650 119094690 41 TGTCCACCTGGTGACGGATGGGACATATTATGGGGACCAAA TGTCCACCTGGTGACGGATTGGACATATTATGGGGACCAAA < 41bp 0.433106089356324 0.76539098558979 NA NA prediction 0.53078197117958 Functional Gain - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119094670 chr9:119094669 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_18902 0 0 0 0 2 PAPPA chr9:119094612 3'AG 119094612 Downstream 58bp 17748 chr9 119094669 119094669 1 + G T BLCA 119094670 + 119094650 119094690 41 TGTCCACCTGGTGACGGATGGGACATATTATGGGGACCAAA TGTCCACCTGGTGACGGATTGGACATATTATGGGGACCAAA < 41bp 0.433106089356324 0.76539098558979 NA NA prediction 0.53078197117958 Functional Gain - PAPPA ENSG00000182752 CDS Human protein_coding chr9:119094670 chr9:119094669 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_18902 0 0 0 0 2 PAPPA chr9:119094747 5'GT 119094747 Upstream 79bp 17749 chr18 61564427 61564427 1 + G T LUAD 61564428 + 61564408 61564448 41 AAGTGTCAATAAGCTGTTTGGTGAGAAGTCTGCGAGCTTCC AAGTGTCAATAAGCTGTTTTGTGAGAAGTCTGCGAGCTTCC < 41bp 0.450343829998852 0.765378591626172 NA NA prediction 0.530757183252344 Functional Gain - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61564428 chr18:61564427 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_18904 0 0 0 0 1 SERPINB2 chr18:61564453 5'GT 61564453 Upstream 27bp 17750 chr7 94047050 94047050 1 + G T rs1800238 94047051 + 94047031 94047071 41 TCAAGGGTGAACCTGGTGTGGTTGGTGCTGTGGGCACTGCT TCAAGGGTGAACCTGGTGTTGTTGGTGCTGTGGGCACTGCT < 41bp 0.435323421309799 0.76537025842242 NA NA prediction 0.530740516844841 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94047051 chr7:94047050 synonymous SNV . 0 20 hm7G_associated_SNPs_18905 3 0 0 3 1 COL1A2 chr7:94047143 5'GT 94047143 Upstream 94bp 17751 chr20 13273039 13273039 1 + G T UCEC 13273040 + 13273020 13273060 41 GGAATTGAAGACACTTTTAGGACAGCTGCCACCGAAGTGAG GGAATTGAAGACACTTTTATGACAGCTGCCACCGAAGTGAG < 41bp 0.595801873052447 0.861169750459592 NA NA prediction 0.530735754814289 Functional Gain - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13273040 chr20:13273039 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_18906 0 0 0 0 2 ISM1 chr20:13273021 3'AG 13273021 Downstream 19bp 17752 chr20 13273039 13273039 1 + G T UCEC 13273040 + 13273020 13273060 41 GGAATTGAAGACACTTTTAGGACAGCTGCCACCGAAGTGAG GGAATTGAAGACACTTTTATGACAGCTGCCACCGAAGTGAG < 41bp 0.595801873052447 0.861169750459592 NA NA prediction 0.530735754814289 Functional Gain - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13273040 chr20:13273039 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_18906 0 0 0 0 2 ISM1 chr20:13273110 5'GT 13273110 Upstream 72bp 17753 chr19 35790485 35790485 1 + G T COAD 35790486 + 35790466 35790506 41 ACATCGTGGTGCCCCCAGAGGTGGTGGCAGGCACGGAGGTG ACATCGTGGTGCCCCCAGATGTGGTGGCAGGCACGGAGGTG < 41bp 0.602344426672645 0.867688447597006 NA NA prediction 0.530688041848722 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35790486 chr19:35790485 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_18907 0 0 0 0 1 MAG chr19:35790457 3'AG 35790457 Downstream 29bp 17754 chr2 46574056 46574056 1 + G T LUAD 46574057 + 46574037 46574077 41 AAGTCCCGGGATGCTGCGCGGTGCCGGCGGAGCAAGGAGAC AAGTCCCGGGATGCTGCGCTGTGCCGGCGGAGCAAGGAGAC < 41bp 0.597199730831851 0.862532733420173 NA NA prediction 0.530666005176645 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46574057 chr2:46574056 nonsynonymous SNV 0.607 4 20 hm7G_associated_SNPs_18908 0 0 1 0 1 EPAS1 chr2:46574012 3'AG 46574012 Downstream 45bp 17755 chr1 25124245 25124245 1 + G T ESCA 25124246 + 25124226 25124266 41 TTTCCAGGCTGGCAGTGATGGTGAAAGCATAGGAAACTGCC TTTCCAGGCTGGCAGTGATTGTGAAAGCATAGGAAACTGCC < 41bp 0.574064264909831 0.83938947181264 NA NA prediction 0.530650413805617 Functional Gain - CLIC4 ENSG00000169504 CDS Human protein_coding chr1:25124246 chr1:25124245 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18909 0 0 1 0 2 CLIC4 chr1:25124233 3'AG 25124233 Downstream 13bp 17756 chr1 25124245 25124245 1 + G T ESCA 25124246 + 25124226 25124266 41 TTTCCAGGCTGGCAGTGATGGTGAAAGCATAGGAAACTGCC TTTCCAGGCTGGCAGTGATTGTGAAAGCATAGGAAACTGCC < 41bp 0.574064264909831 0.83938947181264 NA NA prediction 0.530650413805617 Functional Gain - CLIC4 ENSG00000169504 CDS Human protein_coding chr1:25124246 chr1:25124245 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18909 0 0 1 0 2 CLIC4 chr1:25124342 5'GT 25124342 Upstream 98bp 17757 chr8 42179428 42179428 1 + G T BRCA 42179429 + 42179409 42179449 41 TTTAGAGAGGAGCAAGCAAGGGAGCTGTACAGGAGACTAAG TTTAGAGAGGAGCAAGCAATGGAGCTGTACAGGAGACTAAG < 41bp 0.593141600750812 0.858460273259894 NA NA prediction 0.530637345018164 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179429 chr8:42179428 nonsynonymous SNV 0.659 3 20 hm7G_associated_SNPs_18910 0 0 1 1 2 IKBKB chr8:42179414 3'AG 42179414 Downstream 15bp 17758 chr8 42179428 42179428 1 + G T BRCA 42179429 + 42179409 42179449 41 TTTAGAGAGGAGCAAGCAAGGGAGCTGTACAGGAGACTAAG TTTAGAGAGGAGCAAGCAATGGAGCTGTACAGGAGACTAAG < 41bp 0.593141600750812 0.858460273259894 NA NA prediction 0.530637345018164 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42179429 chr8:42179428 nonsynonymous SNV 0.659 3 20 hm7G_associated_SNPs_18910 0 0 1 1 2 IKBKB chr8:42179463 5'GT 42179463 Upstream 36bp 17759 chr4 56886856 56886856 1 + G T LUSC 56886857 + 56886837 56886877 41 TTAAGAACTAGTCAAAGCCGGGAAAACACCATGCTTCGAGC TTAAGAACTAGTCAAAGCCTGGAAAACACCATGCTTCGAGC < 41bp 0.459549337894059 0.765307141511014 NA NA prediction 0.530614283022028 Functional Gain - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56886857 chr4:56886856 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_18913 0 0 1 0 2 CEP135 chr4:56886842 3'AG 56886842 Downstream 15bp 17760 chr4 56886856 56886856 1 + G T LUSC 56886857 + 56886837 56886877 41 TTAAGAACTAGTCAAAGCCGGGAAAACACCATGCTTCGAGC TTAAGAACTAGTCAAAGCCTGGAAAACACCATGCTTCGAGC < 41bp 0.459549337894059 0.765307141511014 NA NA prediction 0.530614283022028 Functional Gain - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56886857 chr4:56886856 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_18913 0 0 1 0 2 CEP135 chr4:56886946 5'GT 56886946 Upstream 91bp 17761 chr10 119026514 119026514 1 + G T UCEC 119026515 + 119026495 119026535 41 GTGGCTTTGTGCTCTTCTGGGAATGATAATTGTTGGAGTCA GTGGCTTTGTGCTCTTCTGTGAATGATAATTGTTGGAGTCA < 41bp 0.45236545338869 0.765293681213251 NA NA prediction 0.530587362426503 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119026515 chr10:119026514 stopgain 0.997 1 20 hm7G_associated_SNPs_18915 0 0 0 0 2 SLC18A2 chr10:119026495 3'AG 119026495 Downstream 20bp 17762 chr10 119026514 119026514 1 + G T UCEC 119026515 + 119026495 119026535 41 GTGGCTTTGTGCTCTTCTGGGAATGATAATTGTTGGAGTCA GTGGCTTTGTGCTCTTCTGTGAATGATAATTGTTGGAGTCA < 41bp 0.45236545338869 0.765293681213251 NA NA prediction 0.530587362426503 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119026515 chr10:119026514 stopgain 0.997 1 20 hm7G_associated_SNPs_18915 0 0 0 0 2 SLC18A2 chr10:119026546 5'GT 119026546 Upstream 33bp 17763 chr3 188925227 188925227 1 + G T COAD 188925228 + 188925208 188925248 41 CTGTGTCTCTGAAGCAAGAGGGAGATGACCAACCCTCTGAG CTGTGTCTCTGAAGCAAGATGGAGATGACCAACCCTCTGAG < 41bp 0.448676482271061 0.765288291634316 NA NA prediction 0.530576583268632 Functional Gain - TPRG1 ENSG00000188001 CDS Human protein_coding chr3:188925228 chr3:188925227 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_18916 0 0 0 0 1 TPRG1 chr3:188925165 3'AG 188925165 Downstream 63bp 17764 chr10 102296340 102296340 1 + G T UCEC 102296341 + 102296321 102296361 41 TTCCAGAACTTTAAGCCGAGGTCCAACAGGGAAGAAATGAA TTCCAGAACTTTAAGCCGATGTCCAACAGGGAAGAAATGAA < 41bp 0.581272742746644 0.846560395948659 NA NA prediction 0.530575306404029 Functional Gain - HIF1AN ENSG00000166135 CDS Human protein_coding chr10:102296341 chr10:102296340 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_18917 0 0 1 0 1 HIF1AN chr10:102296418 5'GT 102296418 Upstream 79bp 17765 chr19 30936591 30936591 1 + G T LUAD 30936592 + 30936572 30936612 41 AGGCGGCCTCTCCCAGACCGGGAGTGCCCAGGAGGACAGCC AGGCGGCCTCTCCCAGACCTGGAGTGCCCAGGAGGACAGCC < 41bp 0.431512885363566 0.765279477269543 NA NA prediction 0.530558954539085 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30936592 chr19:30936591 nonsynonymous SNV 0.934 4 20 hm7G_associated_SNPs_18918 0 0 0 0 1 ZNF536 chr19:30936639 5'GT 30936639 Upstream 49bp 17766 chr10 129864369 129864369 1 + G T BLCA 129864370 + 129864350 129864390 41 TCAGTACTGGCCCGACCAAGGCTGCTGGACCTATGGAAACA TCAGTACTGGCCCGACCAATGCTGCTGGACCTATGGAAACA < 41bp 0.607256347893035 0.872526747175308 NA NA prediction 0.530540798564546 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129864370 chr10:129864369 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18921 0 0 0 0 2 PTPRE chr10:129864339 3'AG 129864339 Downstream 31bp 17767 chr10 129864369 129864369 1 + G T BLCA 129864370 + 129864350 129864390 41 TCAGTACTGGCCCGACCAAGGCTGCTGGACCTATGGAAACA TCAGTACTGGCCCGACCAATGCTGCTGGACCTATGGAAACA < 41bp 0.607256347893035 0.872526747175308 NA NA prediction 0.530540798564546 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129864370 chr10:129864369 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18921 0 0 0 0 2 PTPRE chr10:129864458 5'GT 129864458 Upstream 90bp 17768 chr16 49412471 49412471 1 + G T LUSC 49412472 + 49412452 49412492 41 ACACCTCAGCATGGTCCCTGGCAGCTACATCAAGGATGGCC ACACCTCAGCATGGTCCCTTGCAGCTACATCAAGGATGGCC < 41bp 0.433820632235269 0.765269897739585 NA NA prediction 0.530539795479171 Functional Gain - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49412472 chr16:49412471 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_18922 0 0 0 0 2 C16orf78 chr16:49412381 3'AG 49412381 Downstream 91bp 17769 chr16 49412471 49412471 1 + G T LUSC 49412472 + 49412452 49412492 41 ACACCTCAGCATGGTCCCTGGCAGCTACATCAAGGATGGCC ACACCTCAGCATGGTCCCTTGCAGCTACATCAAGGATGGCC < 41bp 0.433820632235269 0.765269897739585 NA NA prediction 0.530539795479171 Functional Gain - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49412472 chr16:49412471 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_18922 0 0 0 0 2 C16orf78 chr16:49412504 5'GT 49412504 Upstream 34bp 17770 chr22 42206291 42206291 1 + G T LGG 42206292 + 42206272 42206312 41 CCCAGGACGAGAAGCTGAAGGATGGTATGGTCTGCCCTGCC CCCAGGACGAGAAGCTGAATGATGGTATGGTCTGCCCTGCC < 41bp 0.598936600638819 0.8641813212512 NA NA prediction 0.530489441224762 Functional Gain - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42206292 chr22:42206291 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18923 0 0 1 0 2 CCDC134 chr22:42206211 3'AG 42206211 Downstream 81bp 17771 chr22 42206291 42206291 1 + G T LGG 42206292 + 42206272 42206312 41 CCCAGGACGAGAAGCTGAAGGATGGTATGGTCTGCCCTGCC CCCAGGACGAGAAGCTGAATGATGGTATGGTCTGCCCTGCC < 41bp 0.598936600638819 0.8641813212512 NA NA prediction 0.530489441224762 Functional Gain - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42206292 chr22:42206291 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18923 0 0 1 0 2 CCDC134 chr22:42206295 5'GT 42206295 Upstream 5bp 17772 chr12 9090628 9090628 1 + G T COAD 9090629 + 9090609 9090649 41 GCCGTTGGAGTGTAGAGGAGGTGTACGAGTTTATTGCTTCT GCCGTTGGAGTGTAGAGGATGTGTACGAGTTTATTGCTTCT < 41bp 0.448758671597665 0.765235940933071 NA NA prediction 0.530471881866142 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9090629 chr12:9090628 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_18925 0 0 0 0 1 PHC1 chr12:9090656 5'GT 9090656 Upstream 29bp 17773 chr2 242092999 242092999 1 + G T LUAD 242093000 + 242092980 242093020 41 CTGAAGGATGGGGAGGAGCGGGGGGAGGAGGACCCAGAAGG CTGAAGGATGGGGAGGAGCTGGGGGAGGAGGACCCAGAAGG < 41bp 0.595954156022892 0.861176771264792 NA NA prediction 0.5304452304838 Functional Gain - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242093000 chr2:242092999 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_18926 0 0 1 0 1 PPP1R7 chr2:242093019 5'GT 242093019 Upstream 21bp 17774 chr12 49717402 49717402 1 + G T LUAD 49717403 + 49717383 49717423 41 GTAGCCATCATGACCACCCGGCAAGCCACGAAGGATCCCCT GTAGCCATCATGACCACCCTGCAAGCCACGAAGGATCCCCT < 41bp 0.604118340467563 0.869321633346257 NA NA prediction 0.530406585757387 Functional Gain - TROAP ENSG00000135451 CDS Human antisense chr12:49717403 chr12:49717402 nonsynonymous SNV 0.605 0 20 hm7G_associated_SNPs_18928 0 0 1 0 1 LOC101927267 chr12:49717387 3'AG 49717387 Downstream 16bp 17775 chr6 46620944 46620944 1 + G T THYM 46620945 + 46620925 46620965 41 GCTGAATGTCCGTCCCGGAGGAGGAGGAGAGGCTTTTGCCG GCTGAATGTCCGTCCCGGATGAGGAGGAGAGGCTTTTGCCG < 41bp 0.562998005636657 0.828186819320886 NA NA prediction 0.530377627368458 Functional Gain - SLC25A27 ENSG00000153291 CDS Human protein_coding chr6:46620945 chr6:46620944 nonsynonymous SNV 0.952 0 20 hm7G_associated_SNPs_18930 0 0 1 0 1 SLC25A27 chr6:46621035 5'GT 46621035 Upstream 92bp 17776 chr7 117292934 117292934 1 + G T LUSC 117292935 + 117292915 117292955 41 GAACATTTAGAAAAAACTTGGATCCCTATGAACAGTGGAGT GAACATTTAGAAAAAACTTTGATCCCTATGAACAGTGGAGT < 41bp 0.457805527510273 0.765184176072 NA NA prediction 0.530368352144 Functional Gain - CFTR ENSG00000001626 CDS Human protein_coding chr7:117292935 chr7:117292934 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18931 0 0 0 0 2 CFTR chr7:117292896 3'AG 117292896 Downstream 39bp 17777 chr7 117292934 117292934 1 + G T LUSC 117292935 + 117292915 117292955 41 GAACATTTAGAAAAAACTTGGATCCCTATGAACAGTGGAGT GAACATTTAGAAAAAACTTTGATCCCTATGAACAGTGGAGT < 41bp 0.457805527510273 0.765184176072 NA NA prediction 0.530368352144 Functional Gain - CFTR ENSG00000001626 CDS Human protein_coding chr7:117292935 chr7:117292934 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_18931 0 0 0 0 2 CFTR chr7:117292985 5'GT 117292985 Upstream 52bp 17778 chr13 28196129 28196129 1 + G T UCEC 28196130 + 28196110 28196150 41 CCGCCCCAGCGATGGAAGAGGATCAGGAGCTGGAGAGGTAA CCGCCCCAGCGATGGAAGATGATCAGGAGCTGGAGAGGTAA < 41bp 0.584694596605924 0.849876637022271 NA NA prediction 0.530364080832694 Functional Gain - POLR1D ENSG00000186184 CDS Human protein_coding chr13:28196130 chr13:28196129 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_18932 0 0 1 0 1 POLR1D chr13:28196146 5'GT 28196146 Upstream 18bp 17779 chr12 53775499 53775499 1 + G T DLBC 53775500 + 53775480 53775520 41 GAAAATTGAAAAAGGAGTTGGTGGCAATAATGGGGGCAATG GAAAATTGAAAAAGGAGTTTGTGGCAATAATGGGGGCAATG < 41bp 0.583979411251727 0.849149131428328 NA NA prediction 0.530339440353202 Functional Gain - SP1 ENSG00000185591 CDS Human protein_coding chr12:53775500 chr12:53775499 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18935 0 0 1 0 2 SP1 chr12:53775443 3'AG 53775443 Downstream 57bp 17780 chr12 53775499 53775499 1 + G T DLBC 53775500 + 53775480 53775520 41 GAAAATTGAAAAAGGAGTTGGTGGCAATAATGGGGGCAATG GAAAATTGAAAAAGGAGTTTGTGGCAATAATGGGGGCAATG < 41bp 0.583979411251727 0.849149131428328 NA NA prediction 0.530339440353202 Functional Gain - SP1 ENSG00000185591 CDS Human protein_coding chr12:53775500 chr12:53775499 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18935 0 0 1 0 2 SP1 chr12:53775597 5'GT 53775597 Upstream 99bp 17781 chr14 39790251 39790251 1 + G T LGG 39790252 + 39790232 39790272 41 ACCTTTGCTTCCAGGGGGAGGAGGAAGAGGTATATTGTTTA ACCTTTGCTTCCAGGGGGATGAGGAAGAGGTATATTGTTTA < 41bp 0.469025987093159 0.765150020872912 NA NA prediction 0.530300041745824 Functional Gain - MIA2 ENSG00000150527;ENSG00000258941 CDS Human other chr14:39790252 chr14:39790251 stopgain 1.000 0 20 hm7G_associated_SNPs_18941 0 0 1 0 1 MIA2 chr14:39790260 5'GT 39790260 Upstream 10bp 17782 chr21 47330830 47330830 1 + G T UCEC 47330831 + 47330811 47330851 41 TCCAGTCCACAGGTGCCCAGGTGCAGGTGGCTGGGGACATG TCCAGTCCACAGGTGCCCATGTGCAGGTGGCTGGGGACATG < 41bp 0.427231874737709 0.765126045608159 NA NA prediction 0.530252091216318 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47330831 chr21:47330830 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18943 0 0 0 0 1 PCBP3 chr21:47330816 3'AG 47330816 Downstream 15bp 17783 chr1 150933074 150933074 1 + G T BRCA 150933075 + 150933055 150933095 41 TGACTTTGCAGACAAGGAGGGTCTGGAAATGGGTGATGAGT TGACTTTGCAGACAAGGAGTGTCTGGAAATGGGTGATGAGT < 41bp 0.471021047687119 0.765107202927556 NA NA prediction 0.530214405855113 Functional Gain - SETDB1 ENSG00000143379 CDS Human protein_coding chr1:150933075 chr1:150933074 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_18945 0 0 0 0 1 SETDB1 chr1:150933039 3'AG 150933039 Downstream 36bp 17784 chr17 38349977 38349977 1 + G T LGG 38349978 + 38349958 38349998 41 CCTATGTGCGCCAGTTTCAGGTCATCGACAACCAGAACCTC CCTATGTGCGCCAGTTTCATGTCATCGACAACCAGAACCTC < 41bp 0.574740732612031 0.839836989491045 NA NA prediction 0.530192513758027 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38349978 chr17:38349977 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_18946 0 0 1 0 1 RAPGEFL1 chr17:38349916 3'AG 38349916 Downstream 62bp 17785 chr12 101472992 101472992 1 + G T SKCM 101472993 + 101472973 101473013 41 ACAGTTTTCCTGGAGTTTTGGAAAAGACGGCGAGCAGTAAT ACAGTTTTCCTGGAGTTTTTGAAAAGACGGCGAGCAGTAAT < 41bp 0.581560782156984 0.846648225887691 NA NA prediction 0.530174887461414 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101472993 chr12:101472992 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18949 0 0 0 0 2 ANO4 chr12:101472971 3'AG 101472971 Downstream 22bp 17786 chr12 101472992 101472992 1 + G T SKCM 101472993 + 101472973 101473013 41 ACAGTTTTCCTGGAGTTTTGGAAAAGACGGCGAGCAGTAAT ACAGTTTTCCTGGAGTTTTTGAAAAGACGGCGAGCAGTAAT < 41bp 0.581560782156984 0.846648225887691 NA NA prediction 0.530174887461414 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101472993 chr12:101472992 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18949 0 0 0 0 2 ANO4 chr12:101473053 5'GT 101473053 Upstream 62bp 17787 chrX 10174600 10174600 1 + G T LUAD 10174601 + 10174581 10174621 41 AAGAATGAGGGCAAGAGGCGGGAGGTGAGCCAGCTCAGCTT AAGAATGAGGGCAAGAGGCTGGAGGTGAGCCAGCTCAGCTT < 41bp 0.592448068706463 0.857530312132121 NA NA prediction 0.530164486851317 Functional Gain - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10174601 chrX:10174600 nonsynonymous SNV 0.973 5 20 hm7G_associated_SNPs_18950 0 0 0 0 1 CLCN4 chrX:10174604 5'GT 10174604 Upstream 5bp 17788 chr18 9513260 9513260 1 + G T UCEC 9513261 + 9513241 9513281 41 AGATCATGGGAAGAAAAAAGGGAAATTTAAGAAAAAGGAAA AGATCATGGGAAGAAAAAATGGAAATTTAAGAAAAAGGAAA < 41bp 0.588775097614613 0.853856987415451 NA NA prediction 0.530163779601677 Functional Gain - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9513261 chr18:9513260 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18951 0 0 1 0 1 RALBP1 chr18:9513287 5'GT 9513287 Upstream 28bp 17789 chr19 11215977 11215977 1 + G T LUAD 11215978 + 11215958 11215998 41 TTCGTCTGTGACTCAGACCGGGACTGCTTGGACGGCTCAGA TTCGTCTGTGACTCAGACCTGGACTGCTTGGACGGCTCAGA < 41bp 0.482268742148407 0.765060549323948 NA NA prediction 0.530121098647896 Functional Gain - LDLR ENSG00000130164 CDS Human protein_coding chr19:11215978 chr19:11215977 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_18952 0 0 1 0 1 LDLR chr19:11215896 3'AG 11215896 Downstream 82bp 17790 chr6 57472431 57472431 1 + G T rs371124515 57472432 + 57472412 57472452 41 TACAAGATCTCTCCTGGAGGGATAAGCCAGGTAGGTCATAT TACAAGATCTCTCCTGGAGTGATAAGCCAGGTAGGTCATAT < 41bp 0.473810630240879 0.765045072362755 NA NA prediction 0.530090144725511 Functional Gain - PRIM2 ENSG00000146143 UTR3 Human protein_coding chr6:57472432 chr6:57472431 . 0.933 2 20 hm7G_associated_SNPs_18954 0 0 0 0 1 PRIM2 chr6:57472441 5'GT 57472441 Upstream 11bp 17791 chr16 68592375 68592375 1 + G T SARC 68592376 + 68592356 68592396 41 GTGTATTTACCCATGAGCAGGATATCAAGTTTCCAAGCCAG GTGTATTTACCCATGAGCATGATATCAAGTTTCCAAGCCAG < 41bp 0.518769279243234 0.783805128906158 NA NA prediction 0.530071699325848 Functional Gain - ZFP90 ENSG00000184939 splicing Human protein_coding chr16:68592376 chr16:68592375 . 1.000 0 20 hm7G_associated_SNPs_18955 0 0 1 0 1 ZFP90 chr16:68592471 5'GT 68592471 Upstream 97bp 17792 chr19 45317416 45317416 1 + G T LUAD 45317417 + 45317397 45317437 41 CCCTTCCCTTAGATCCCACGGAGCACGTGCAGTTCTGGGTG CCCTTCCCTTAGATCCCACTGAGCACGTGCAGTTCTGGGTG < 41bp 0.432438581638436 0.765013824186224 NA NA prediction 0.530027648372448 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45317417 chr19:45317416 synonymous SNV . 0 20 hm7G_associated_SNPs_18956 0 0 0 0 1 BCAM chr19:45317409 3'AG 45317409 Downstream 8bp 17793 chr5 37605225 37605225 1 + G T LUSC 37605226 + 37605206 37605246 41 AAAAGTGTGTTTAAACCACGGACGATGCAAGGCAAAAAAGT AAAAGTGTGTTTAAACCACTGACGATGCAAGGCAAAAAAGT < 41bp 0.454627664038124 0.765010025489065 NA NA prediction 0.530020050978129 Functional Gain - WDR70 ENSG00000082068 CDS Human protein_coding chr5:37605226 chr5:37605225 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_18957 0 0 0 0 1 WDR70 chr5:37605166 3'AG 37605166 Downstream 60bp 17794 chr2 202938393 202938393 1 + G T UCEC 202938394 + 202938374 202938414 41 CCGGGGCCACGGGAAGCTGGGCCAGGACAAACAGAAGTTAG CCGGGGCCACGGGAAGCTGTGCCAGGACAAACAGAAGTTAG < 41bp 0.44836919558909 0.764971318378058 NA NA prediction 0.529942636756116 Functional Gain - KIAA2012 ENSG00000182329 CDS Human protein_coding chr2:202938394 chr2:202938393 nonsynonymous SNV 0.936 1 20 hm7G_associated_SNPs_18962 0 0 0 0 1 KIAA2012 chr2:202938434 5'GT 202938434 Upstream 42bp 17795 chr10 26575274 26575274 1 + G T OV 26575275 + 26575255 26575295 41 TTTCTCTTCTCTCTTGTAGGGATTGATGCAGAATTGCAACC TTTCTCTTCTCTCTTGTAGTGATTGATGCAGAATTGCAACC < 41bp 0.459464968615902 0.764969876797837 NA NA prediction 0.529939753595674 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26575275 chr10:26575274 stopgain 0.953 1 20 hm7G_associated_SNPs_18963 0 0 0 0 1 GAD2 chr10:26575274 3'AG 26575274 Downstream 1bp 17796 chr15 90902091 90902091 1 + G T UCEC 90902092 + 90902072 90902112 41 TTCCTGTGTAGAATTTCCAGGCCTAGTGTAATCTCCCAGCC TTCCTGTGTAGAATTTCCATGCCTAGTGTAATCTCCCAGCC < 41bp 0.443242580378215 0.764958260250344 NA NA prediction 0.529916520500689 Functional Gain - ZNF774 ENSG00000196391 CDS Human protein_coding chr15:90902092 chr15:90902091 nonsynonymous SNV 0.647 1 20 hm7G_associated_SNPs_18965 0 0 0 0 2 ZNF774 chr15:90902083 3'AG 90902083 Downstream 9bp 17797 chr15 90902091 90902091 1 + G T UCEC 90902092 + 90902072 90902112 41 TTCCTGTGTAGAATTTCCAGGCCTAGTGTAATCTCCCAGCC TTCCTGTGTAGAATTTCCATGCCTAGTGTAATCTCCCAGCC < 41bp 0.443242580378215 0.764958260250344 NA NA prediction 0.529916520500689 Functional Gain - ZNF774 ENSG00000196391 CDS Human protein_coding chr15:90902092 chr15:90902091 nonsynonymous SNV 0.647 1 20 hm7G_associated_SNPs_18965 0 0 0 0 2 ZNF774 chr15:90902189 5'GT 90902189 Upstream 99bp 17798 chr19 55019221 55019221 1 + G T HNSC 55019222 + 55019202 55019242 41 AAACATTCCGCCTGGAGAGGGAGGATAGAGCCAAGTACAAA AAACATTCCGCCTGGAGAGTGAGGATAGAGCCAAGTACAAA < 41bp 0.458094955083878 0.764955794226053 NA NA prediction 0.529911588452107 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019222 chr19:55019221 nonsynonymous SNV 0.024 1 20 hm7G_associated_SNPs_18966 0 0 0 0 1 LAIR2 chr19:55019305 5'GT 55019305 Upstream 85bp 17799 chr16 67914984 67914984 1 + G T UCEC 67914985 + 67914965 67915005 41 GCCTGTCCTCCCAGCCCCAGGAATGGCCTTCAGGAAAAGCA GCCTGTCCTCCCAGCCCCATGAATGGCCTTCAGGAAAAGCA < 41bp 0.420826276624222 0.764951354364629 NA NA prediction 0.529902708729257 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914985 chr16:67914984 nonsynonymous SNV 0.964 4 20 hm7G_associated_SNPs_18967 0 0 1 0 2 EDC4 chr16:67914979 3'AG 67914979 Downstream 6bp 17800 chr16 67914984 67914984 1 + G T UCEC 67914985 + 67914965 67915005 41 GCCTGTCCTCCCAGCCCCAGGAATGGCCTTCAGGAAAAGCA GCCTGTCCTCCCAGCCCCATGAATGGCCTTCAGGAAAAGCA < 41bp 0.420826276624222 0.764951354364629 NA NA prediction 0.529902708729257 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67914985 chr16:67914984 nonsynonymous SNV 0.964 4 20 hm7G_associated_SNPs_18967 0 0 1 0 2 EDC4 chr16:67915083 5'GT 67915083 Upstream 100bp 17801 chr5 153789304 153789304 1 + G T LUAD 153789305 + 153789285 153789325 41 ACCCACCCGTGGAGCCCCCGGCTGCAGCTTGGGGGGAGGTG ACCCACCCGTGGAGCCCCCTGCTGCAGCTTGGGGGGAGGTG < 41bp 0.604953243723073 0.869898838663479 NA NA prediction 0.529891189880811 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153789305 chr5:153789304 synonymous SNV . 0 20 hm7G_associated_SNPs_18969 0 0 0 0 1 GALNT10 chr5:153789322 5'GT 153789322 Upstream 19bp 17802 chr12 77239569 77239569 1 + G T THCA 77239570 + 77239550 77239590 41 ATCATCATTGCCCATGGGTGGGTAACTGTGTAGGTAAGTTG ATCATCATTGCCCATGGGTTGGTAACTGTGTAGGTAAGTTG < 41bp 0.585176163984162 0.850100196765112 NA NA prediction 0.5298480655619 Functional Gain - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77239570 chr12:77239569 synonymous SNV . 0 20 hm7G_associated_SNPs_18970 0 0 1 0 2 ZDHHC17 chr12:77239489 3'AG 77239489 Downstream 81bp 17803 chr12 77239569 77239569 1 + G T THCA 77239570 + 77239550 77239590 41 ATCATCATTGCCCATGGGTGGGTAACTGTGTAGGTAAGTTG ATCATCATTGCCCATGGGTTGGTAACTGTGTAGGTAAGTTG < 41bp 0.585176163984162 0.850100196765112 NA NA prediction 0.5298480655619 Functional Gain - ZDHHC17 ENSG00000186908 CDS Human protein_coding chr12:77239570 chr12:77239569 synonymous SNV . 0 20 hm7G_associated_SNPs_18970 0 0 1 0 2 ZDHHC17 chr12:77239582 5'GT 77239582 Upstream 14bp 17804 chr8 96059229 96059229 1 + G T PRAD 96059230 + 96059210 96059250 41 CTGAAATCATAGGTATAAAGGATCTTCATGCAGATCATGCT CTGAAATCATAGGTATAAATGATCTTCATGCAGATCATGCT < 41bp 0.578833140358306 0.84374530763822 NA NA prediction 0.529824334559828 Functional Gain - NDUFAF6 ENSG00000156170 CDS Human protein_coding chr8:96059230 chr8:96059229 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_18972 0 0 1 2 1 NDUFAF6 chr8:96059222 3'AG 96059222 Downstream 8bp 17805 chr12 94072793 94072793 1 + G T LUAD 94072794 + 94072774 94072814 41 CCCTACAGGAGTTTCCCTGGGTCAGGGAGAAGCTGAAGAAG CCCTACAGGAGTTTCCCTGTGTCAGGGAGAAGCTGAAGAAG < 41bp 0.589174918960072 0.854076550393946 NA NA prediction 0.529803262867748 Functional Gain - CRADD ENSG00000169372 CDS Human protein_coding chr12:94072794 chr12:94072793 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_18975 0 0 1 0 1 CRADD chr12:94072848 5'GT 94072848 Upstream 56bp 17806 chr2 241533429 241533429 1 + G T HNSC 241533430 + 241533410 241533450 41 TGCGGATCCAGAACCCCTGGGGCCGGCGGTGCTGGCAGGGG TGCGGATCCAGAACCCCTGTGGCCGGCGGTGCTGGCAGGGG < 41bp 0.429049405909618 0.764898177426421 NA NA prediction 0.529796354852843 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533430 chr2:241533429 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18977 0 0 0 0 1 CAPN10 chr2:241533464 5'GT 241533464 Upstream 36bp 17807 chr7 6634134 6634134 1 + G T TGCT 6634135 + 6634115 6634155 41 ACTACTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAG ACTACTGCTGTTTGGTGCCTGGATCCATTCAGACGCTGAAG < 41bp 0.604320217578877 0.869204586366402 NA NA prediction 0.529768737575051 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634135 chr7:6634134 synonymous SNV . 0 20 hm7G_associated_SNPs_18978 0 0 1 0 2 C7orf26 chr7:6634066 3'AG 6634066 Downstream 69bp 17808 chr7 6634134 6634134 1 + G T TGCT 6634135 + 6634115 6634155 41 ACTACTGCTGTTTGGTGCCGGGATCCATTCAGACGCTGAAG ACTACTGCTGTTTGGTGCCTGGATCCATTCAGACGCTGAAG < 41bp 0.604320217578877 0.869204586366402 NA NA prediction 0.529768737575051 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634135 chr7:6634134 synonymous SNV . 0 20 hm7G_associated_SNPs_18978 0 0 1 0 2 C7orf26 chr7:6634231 5'GT 6634231 Upstream 98bp 17809 chr11 9597526 9597526 1 + G T UCEC 9597527 + 9597507 9597547 41 ACAGAAAAATCAGGAAAAAGGGAATTTGATGTGCGACAGAC ACAGAAAAATCAGGAAAAATGGAATTTGATGTGCGACAGAC < 41bp 0.580580742779691 0.845464006631355 NA NA prediction 0.529766527703328 Functional Gain - WEE1 ENSG00000166483 CDS Human protein_coding chr11:9597527 chr11:9597526 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_18980 0 0 1 0 1 WEE1 chr11:9597435 3'AG 9597435 Downstream 92bp 17810 chr22 31799118 31799118 1 + G T SARC 31799119 + 31799099 31799139 41 TGGCAGGGGTATATTCTGAGGTGGCAGCCTATGAATTCACT TGGCAGGGGTATATTCTGATGTGGCAGCCTATGAATTCACT < 41bp 0.440423794054009 0.764873324570391 NA NA prediction 0.529746649140781 Functional Gain - DRG1 ENSG00000185721 CDS Human protein_coding chr22:31799119 chr22:31799118 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_18981 0 0 1 0 1 DRG1 chr22:31799190 5'GT 31799190 Upstream 73bp 17811 chrX 73740833 73740833 1 + G T LUAD 73740834 + 73740814 73740854 41 TTTCTCTGCAGCATGGGTCGGAGCCCTCGCGATGGGTATGA TTTCTCTGCAGCATGGGTCTGAGCCCTCGCGATGGGTATGA < 41bp 0.590578730042062 0.85544889229813 NA NA prediction 0.529740324512135 Functional Gain - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73740834 chrX:73740833 stopgain 0.984 1 20 hm7G_associated_SNPs_18982 0 0 0 0 1 SLC16A2 chrX:73740825 3'AG 73740825 Downstream 9bp 17812 chr11 10785972 10785972 1 + G T LUSC 10785973 + 10785953 10785993 41 TTTTAGACTTGGAAACCTAGGGGAGGCTAAGGTAGGAAAAT TTTTAGACTTGGAAACCTATGGGAGGCTAAGGTAGGAAAAT < 41bp 0.586246136532102 0.851115960635001 NA NA prediction 0.529739648205798 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10785973 chr11:10785972 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_18983 0 0 1 0 1 CTR9 chr11:10785983 5'GT 10785983 Upstream 12bp 17813 chr3 12623356 12623356 1 + G T HNSC 12623357 + 12623337 12623377 41 CAAGGGGACCTGCCCATTTGGAAGCAAATGTCTTTATCGCC CAAGGGGACCTGCCCATTTTGAAGCAAATGTCTTTATCGCC < 41bp 0.442270987772048 0.764851675537375 NA NA prediction 0.52970335107475 Functional Gain - MKRN2 ENSG00000075975 CDS Human protein_coding chr3:12623357 chr3:12623356 stopgain 1.000 1 20 hm7G_associated_SNPs_18986 0 0 1 0 1 MKRN2 chr3:12623307 3'AG 12623307 Downstream 50bp 17814 chr13 31491582 31491582 1 + G T SARC 31491583 + 31491563 31491603 41 GTGATTATAAAGACTACAGGGAAACTATATTGAGCAAACCA GTGATTATAAAGACTACAGTGAAACTATATTGAGCAAACCA < 41bp 0.583919964917658 0.848765777324567 NA NA prediction 0.529691624813817 Functional Gain - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31491583 chr13:31491582 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18987 0 0 0 0 2 MEDAG chr13:31491540 3'AG 31491540 Downstream 43bp 17815 chr13 31491582 31491582 1 + G T SARC 31491583 + 31491563 31491603 41 GTGATTATAAAGACTACAGGGAAACTATATTGAGCAAACCA GTGATTATAAAGACTACAGTGAAACTATATTGAGCAAACCA < 41bp 0.583919964917658 0.848765777324567 NA NA prediction 0.529691624813817 Functional Gain - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31491583 chr13:31491582 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18987 0 0 0 0 2 MEDAG chr13:31491649 5'GT 31491649 Upstream 68bp 17816 chr19 39590924 39590924 1 + G T LIHC 39590925 + 39590905 39590945 41 GTTGGGGATAGGTTCATGCGGCTCATTGAACCCGTGGCTGC GTTGGGGATAGGTTCATGCTGCTCATTGAACCCGTGGCTGC < 41bp 0.607747151313216 0.872567238766557 NA NA prediction 0.529640174906682 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39590925 chr19:39590924 nonsynonymous SNV 0.954 3 20 hm7G_associated_SNPs_18990 0 0 0 0 2 ACP7 chr19:39590867 3'AG 39590867 Downstream 58bp 17817 chr19 39590924 39590924 1 + G T LIHC 39590925 + 39590905 39590945 41 GTTGGGGATAGGTTCATGCGGCTCATTGAACCCGTGGCTGC GTTGGGGATAGGTTCATGCTGCTCATTGAACCCGTGGCTGC < 41bp 0.607747151313216 0.872567238766557 NA NA prediction 0.529640174906682 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39590925 chr19:39590924 nonsynonymous SNV 0.954 3 20 hm7G_associated_SNPs_18990 0 0 0 0 2 ACP7 chr19:39590990 5'GT 39590990 Upstream 67bp 17818 chr19 52887118 52887118 1 + G T CESC 52887119 + 52887099 52887139 41 TAGAGAGCAGCTCTAAATTGGGAAGCAATGCCGGAAACAAG TAGAGAGCAGCTCTAAATTTGGAAGCAATGCCGGAAACAAG < 41bp 0.559077100633655 0.823892178814154 NA NA prediction 0.529630156360997 Functional Gain - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52887119 chr19:52887118 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_18991 0 0 0 0 1 ZNF880 chr19:52887102 3'AG 52887102 Downstream 17bp 17819 chr9 82340023 82340023 1 + G T LUAD 82340024 + 82340004 82340044 41 ACATTGTCACTGGCTCTGGGGATAAGAAGGCCACAGTTTAT ACATTGTCACTGGCTCTGGTGATAAGAAGGCCACAGTTTAT < 41bp 0.560314463498503 0.825111693193275 NA NA prediction 0.529594459389545 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82340024 chr9:82340023 synonymous SNV . 0 20 hm7G_associated_SNPs_18993 0 0 1 0 1 TLE4 chr9:82339952 3'AG 82339952 Downstream 72bp 17820 chr11 105845102 105845102 1 + G T LUSC 105845103 + 105845083 105845123 41 ACATTCTGGTTGGCGGCTTGGGCTTGGCAATGCTGGTGGCT ACATTCTGGTTGGCGGCTTTGGCTTGGCAATGCTGGTGGCT < 41bp 0.44845848111855 0.764791582921782 NA NA prediction 0.529583165843565 Functional Gain - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105845103 chr11:105845102 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18994 0 0 0 1 1 GRIA4 chr11:105845037 3'AG 105845037 Downstream 66bp 17821 chr15 89738497 89738497 1 + G T STAD 89738498 + 89738478 89738518 41 TTTGTGCTGCCTCTGCATGGGGGCCACTTGGGCTTCTTTGA TTTGTGCTGCCTCTGCATGTGGGCCACTTGGGCTTCTTTGA < 41bp 0.447990348885117 0.764786269883667 NA NA prediction 0.529572539767335 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89738498 chr15:89738497 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_18996 0 0 1 0 1 ABHD2 chr15:89738458 3'AG 89738458 Downstream 40bp 17822 chr12 111082930 111082930 1 + G T UCEC 111082931 + 111082911 111082951 41 ATCACCCAGTCATTCAACAGGAAGGTAAAGGGGAGAAGGTA ATCACCCAGTCATTCAACATGAAGGTAAAGGGGAGAAGGTA < 41bp 0.46135378046238 0.764778034441899 NA NA prediction 0.529556068883798 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111082931 chr12:111082930 nonsynonymous SNV 0.242 0 20 hm7G_associated_SNPs_18997 0 0 0 1 1 TCTN1 chr12:111082934 5'GT 111082934 Upstream 5bp 17823 chr7 116830916 116830916 1 + G T LUAD 116830917 + 116830897 116830937 41 TGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGA TGAGGCTGCATCTCGGCGGTGGCTGAGCACAGCAGAGATGA < 41bp 0.598073323410984 0.862825336640219 NA NA prediction 0.529504026458471 Functional Gain - ST7 ENSG00000004866 CDS Human protein_coding chr7:116830917 chr7:116830916 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18999 0 0 1 0 2 ST7 chr7:116830888 3'AG 116830888 Downstream 29bp 17824 chr7 116830916 116830916 1 + G T LUAD 116830917 + 116830897 116830937 41 TGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGA TGAGGCTGCATCTCGGCGGTGGCTGAGCACAGCAGAGATGA < 41bp 0.598073323410984 0.862825336640219 NA NA prediction 0.529504026458471 Functional Gain - ST7 ENSG00000004866 CDS Human protein_coding chr7:116830917 chr7:116830916 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_18999 0 0 1 0 2 ST7 chr7:116830990 5'GT 116830990 Upstream 75bp 17825 chr19 3910845 3910845 1 + G T UCEC 3910846 + 3910826 3910866 41 ATCATCGTCCACCCCTCGTGGTTCATTCGGACTGTGCTGGC ATCATCGTCCACCCCTCGTTGTTCATTCGGACTGTGCTGGC < 41bp 0.428601790638848 0.764749146872392 NA NA prediction 0.529498293744784 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3910846 chr19:3910845 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_19000 0 0 0 0 2 ATCAY chr19:3910801 3'AG 3910801 Downstream 45bp 17826 chr19 3910845 3910845 1 + G T UCEC 3910846 + 3910826 3910866 41 ATCATCGTCCACCCCTCGTGGTTCATTCGGACTGTGCTGGC ATCATCGTCCACCCCTCGTTGTTCATTCGGACTGTGCTGGC < 41bp 0.428601790638848 0.764749146872392 NA NA prediction 0.529498293744784 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3910846 chr19:3910845 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_19000 0 0 0 0 2 ATCAY chr19:3910887 5'GT 3910887 Upstream 43bp 17827 chr6 43267376 43267376 1 + G T SKCM 43267377 + 43267357 43267397 41 CTTTGCAGGTTTGGGCGGCGGCGTCTGCTGCTGGTAGCCTA CTTTGCAGGTTTGGGCGGCTGCGTCTGCTGCTGGTAGCCTA < 41bp 0.429644627710554 0.764749101996973 NA NA prediction 0.529498203993947 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43267377 chr6:43267376 nonsynonymous SNV 0.725 4 20 hm7G_associated_SNPs_19001 0 0 1 0 1 SLC22A7 chr6:43267365 3'AG 43267365 Downstream 12bp 17828 chr11 66816104 66816104 1 + G T ESCA 66816105 + 66816085 66816125 41 AGCAGCAGCGACGGCCGTGGGGACAACGTGGGCCATGTCAT AGCAGCAGCGACGGCCGTGTGGACAACGTGGGCCATGTCAT < 41bp 0.584115329948447 0.848863701386507 NA NA prediction 0.529496742876122 Functional Gain - SYT12 ENSG00000173227 CDS Human protein_coding chr11:66816105 chr11:66816104 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19002 0 0 0 0 1 SYT12 chr11:66816055 3'AG 66816055 Downstream 50bp 17829 chr17 8170724 8170724 1 + G T UCEC 8170725 + 8170705 8170745 41 GAGTCGCCATCTTGCGAGAGGAGGGCAGTAATGGAGACCGG GAGTCGCCATCTTGCGAGATGAGGGCAGTAATGGAGACCGG < 41bp 0.603809778199984 0.868537773937266 NA NA prediction 0.529455991474564 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170725 chr17:8170724 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19004 0 0 1 0 2 PFAS chr17:8170690 3'AG 8170690 Downstream 35bp 17830 chr17 8170724 8170724 1 + G T UCEC 8170725 + 8170705 8170745 41 GAGTCGCCATCTTGCGAGAGGAGGGCAGTAATGGAGACCGG GAGTCGCCATCTTGCGAGATGAGGGCAGTAATGGAGACCGG < 41bp 0.603809778199984 0.868537773937266 NA NA prediction 0.529455991474564 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170725 chr17:8170724 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19004 0 0 1 0 2 PFAS chr17:8170781 5'GT 8170781 Upstream 58bp 17831 chr19 17452350 17452350 1 + G T LUAD 17452351 + 17452331 17452371 41 GGCACCAGCACCACCTCCAGGGTTGCCTGGATGCCCTCGGC GGCACCAGCACCACCTCCATGGTTGCCTGGATGCCCTCGGC < 41bp 0.43618214069604 0.764726524790772 NA NA prediction 0.529453049581543 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17452351 chr19:17452350 nonsynonymous SNV 0.685 0 20 hm7G_associated_SNPs_19005 0 0 1 0 1 GTPBP3 chr19:17452287 3'AG 17452287 Downstream 64bp 17832 chrX 46951178 46951178 1 + G T UCEC 46951179 + 46951159 46951199 41 GGTGGCCTGTTACAATGGAGGAAGAGTGATTCGTTTAGATC GGTGGCCTGTTACAATGGATGAAGAGTGATTCGTTTAGATC < 41bp 0.590329717642881 0.855035989485172 NA NA prediction 0.529412543684582 Functional Gain - RGN ENSG00000130988 CDS Human protein_coding chrX:46951179 chrX:46951178 stopgain 1.000 1 20 hm7G_associated_SNPs_19007 0 0 1 0 1 RGN chrX:46951208 5'GT 46951208 Upstream 31bp 17833 chr11 9499962 9499962 1 + G T SARC 9499963 + 9499943 9499983 41 ATGACCAGAGTGCATTACAGGCGGTTCAGCTGGAAGATGGT ATGACCAGAGTGCATTACATGCGGTTCAGCTGGAAGATGGT < 41bp 0.597280806641917 0.861979827691507 NA NA prediction 0.52939804209918 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9499963 chr11:9499962 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_19009 0 0 1 0 1 ZNF143 chr11:9499937 3'AG 9499937 Downstream 26bp 17834 chr10 60556226 60556226 1 + G T LUSC 60556227 + 60556207 60556247 41 CCCAGCATCCTGCCCTGCCGGCCTGGCATGTCCCAGCCTGG CCCAGCATCCTGCCCTGCCTGCCTGGCATGTCCCAGCCTGG < 41bp 0.423944667413746 0.764695907205512 NA NA prediction 0.529391814411024 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60556227 chr10:60556226 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19010 0 0 0 0 1 BICC1 chr10:60556286 5'GT 60556286 Upstream 61bp 17835 chr6 130392204 130392204 1 + G T LUSC 130392205 + 130392185 130392225 41 CATTCATCTGTGTTGCTACGGTAACAGATATGGTGGACAAT CATTCATCTGTGTTGCTACTGTAACAGATATGGTGGACAAT < 41bp 0.578321863229203 0.843007483554464 NA NA prediction 0.529371240650521 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130392205 chr6:130392204 synonymous SNV . 0 20 hm7G_associated_SNPs_19011 0 0 1 0 2 L3MBTL3 chr6:130392121 3'AG 130392121 Downstream 84bp 17836 chr6 130392204 130392204 1 + G T LUSC 130392205 + 130392185 130392225 41 CATTCATCTGTGTTGCTACGGTAACAGATATGGTGGACAAT CATTCATCTGTGTTGCTACTGTAACAGATATGGTGGACAAT < 41bp 0.578321863229203 0.843007483554464 NA NA prediction 0.529371240650521 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130392205 chr6:130392204 synonymous SNV . 0 20 hm7G_associated_SNPs_19011 0 0 1 0 2 L3MBTL3 chr6:130392272 5'GT 130392272 Upstream 69bp 17837 chr20 62863576 62863576 1 + G T LUAD 62863577 + 62863557 62863597 41 GGGAAATACGCCTCTCACAGGAGCGCATCCGGCTGCCCACT GGGAAATACGCCTCTCACATGAGCGCATCCGGCTGCCCACT < 41bp 0.423913205882662 0.764679609546612 NA NA prediction 0.529359219093223 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62863577 chr20:62863576 nonsynonymous SNV 0.867 4 20 hm7G_associated_SNPs_19012 0 0 0 0 1 MYT1 chr20:62863517 3'AG 62863517 Downstream 60bp 17838 chr17 73725482 73725482 1 + G T BLCA 73725483 + 73725463 73725503 41 CCTGGATGCTCCTGAGGGCGGCTTCGATGCCATCCTGCAGA CCTGGATGCTCCTGAGGGCTGCTTCGATGCCATCCTGCAGA < 41bp 0.424995754853572 0.764662718552956 NA NA prediction 0.529325437105913 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73725483 chr17:73725482 nonsynonymous SNV 0.341 5 20 hm7G_associated_SNPs_19014 0 0 0 0 1 ITGB4 chr17:73725517 5'GT 73725517 Upstream 36bp 17839 chr17 2276671 2276671 1 + G T BLCA 2276672 + 2276652 2276692 41 CAGCAGGTGTTGGCAGAGTGGAAGGCCTGCGAGGTGGTGGT CAGCAGGTGTTGGCAGAGTTGAAGGCCTGCGAGGTGGTGGT < 41bp 0.603008385146944 0.86765797586343 NA NA prediction 0.529299181432972 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2276672 chr17:2276671 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19017 0 0 1 0 1 SGSM2 chr17:2276625 3'AG 2276625 Downstream 47bp 17840 chr7 100773852 100773852 1 + G T SKCM 100773853 + 100773833 100773873 41 CACTTCTTCAGGCTGTTCCGGAGCACGGTCAAGCAAGTGGA CACTTCTTCAGGCTGTTCCTGAGCACGGTCAAGCAAGTGGA < 41bp 0.451475299612292 0.764641362654983 NA NA prediction 0.529282725309966 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100773853 chr7:100773852 nonsynonymous SNV 0.192 0 20 hm7G_associated_SNPs_19019 0 0 1 0 1 SERPINE1 chr7:100773935 5'GT 100773935 Upstream 84bp 17841 chr8 99162816 99162816 1 + G T GBM 99162817 + 99162797 99162837 41 TTTCCAGACTGCCCTGCCGGGATGCTGTTTGCGGAAGAGCA TTTCCAGACTGCCCTGCCGTGATGCTGTTTGCGGAAGAGCA < 41bp 0.599410381815059 0.864032267885838 NA NA prediction 0.529243772141558 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99162817 chr8:99162816 nonsynonymous SNV 0.931 3 20 hm7G_associated_SNPs_19022 0 0 0 0 1 POP1 chr8:99162867 5'GT 99162867 Upstream 52bp 17842 chr1 183192282 183192282 1 + G T LUSC 183192283 + 183192263 183192303 41 TTCACAGCCAAATTTCTTGGGAATCAACAGGTGAGCTATGG TTCACAGCCAAATTTCTTGTGAATCAACAGGTGAGCTATGG < 41bp 0.43597751280674 0.764615783048651 NA NA prediction 0.529231566097301 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183192283 chr1:183192282 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19023 0 0 0 0 1 LAMC2 chr1:183192270 3'AG 183192270 Downstream 13bp 17843 chr11 64135651 64135651 1 + G T LUAD 64135652 + 64135632 64135672 41 TCTTTGACCACAACAACGCGGTGATGACCGATGGGCTGGAA TCTTTGACCACAACAACGCTGTGATGACCGATGGGCTGGAA < 41bp 0.610001099010588 0.874594044634214 NA NA prediction 0.529185891247253 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64135652 chr11:64135651 synonymous SNV . 0 20 hm7G_associated_SNPs_19026 0 0 1 0 2 RPS6KA4 chr11:64135604 3'AG 64135604 Downstream 48bp 17844 chr11 64135651 64135651 1 + G T LUAD 64135652 + 64135632 64135672 41 TCTTTGACCACAACAACGCGGTGATGACCGATGGGCTGGAA TCTTTGACCACAACAACGCTGTGATGACCGATGGGCTGGAA < 41bp 0.610001099010588 0.874594044634214 NA NA prediction 0.529185891247253 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64135652 chr11:64135651 synonymous SNV . 0 20 hm7G_associated_SNPs_19026 0 0 1 0 2 RPS6KA4 chr11:64135732 5'GT 64135732 Upstream 82bp 17845 chrX 50090687 50090687 1 + G T UCEC 50090688 + 50090668 50090708 41 TCTGCGAGATGACCCTGCAGGAATACCACTATGTCCAGGAG TCTGCGAGATGACCCTGCATGAATACCACTATGTCCAGGAG < 41bp 0.594054875105378 0.85863127707184 NA NA prediction 0.529152803932925 Functional Gain - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50090688 chrX:50090687 nonsynonymous SNV 0.572 0 20 hm7G_associated_SNPs_19027 0 0 0 0 1 CCNB3 chrX:50090774 5'GT 50090774 Upstream 88bp 17846 chr8 22432192 22432192 1 + G T HNSC 22432193 + 22432173 22432213 41 CTTTCAGGTGTCTCCCGGAGGACCCAGAAATTCGGAACGTT CTTTCAGGTGTCTCCCGGATGACCCAGAAATTCGGAACGTT < 41bp 0.574986090551531 0.839519882717215 NA NA prediction 0.529067584331369 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22432193 chr8:22432192 stopgain 0.997 4 20 hm7G_associated_SNPs_19031 0 0 1 0 1 SORBS3 chr8:22432180 3'AG 22432180 Downstream 13bp 17847 chrX 152821797 152821797 1 + G T UCEC 152821798 + 152821778 152821818 41 CCCCTCCCCAGATAGAACAGGAGCGGCTGGACAAGGTGTGG CCCCTCCCCAGATAGAACATGAGCGGCTGGACAAGGTGTGG < 41bp 0.425363057061924 0.764518093905582 NA NA prediction 0.529036187811164 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152821798 chrX:152821797 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_19034 0 0 0 0 2 ATP2B3 chrX:152821789 3'AG 152821789 Downstream 9bp 17848 chrX 152821797 152821797 1 + G T UCEC 152821798 + 152821778 152821818 41 CCCCTCCCCAGATAGAACAGGAGCGGCTGGACAAGGTGTGG CCCCTCCCCAGATAGAACATGAGCGGCTGGACAAGGTGTGG < 41bp 0.425363057061924 0.764518093905582 NA NA prediction 0.529036187811164 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152821798 chrX:152821797 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_19034 0 0 0 0 2 ATP2B3 chrX:152821876 5'GT 152821876 Upstream 80bp 17849 chr19 11559781 11559781 1 + G T LUAD 11559782 + 11559762 11559802 41 CTCGCAGAAACCCAAACTCGGGGGCTCTCCCACCAGCCTTG CTCGCAGAAACCCAAACTCTGGGGCTCTCCCACCAGCCTTG < 41bp 0.421866853384142 0.76450395195669 NA NA prediction 0.529007903913379 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559782 chr19:11559781 nonsynonymous SNV 0.544 3 20 hm7G_associated_SNPs_19035 0 0 1 0 2 PRKCSH chr19:11559729 3'AG 11559729 Downstream 53bp 17850 chr19 11559781 11559781 1 + G T LUAD 11559782 + 11559762 11559802 41 CTCGCAGAAACCCAAACTCGGGGGCTCTCCCACCAGCCTTG CTCGCAGAAACCCAAACTCTGGGGCTCTCCCACCAGCCTTG < 41bp 0.421866853384142 0.76450395195669 NA NA prediction 0.529007903913379 Functional Gain - PRKCSH ENSG00000130175 CDS Human protein_coding chr19:11559782 chr19:11559781 nonsynonymous SNV 0.544 3 20 hm7G_associated_SNPs_19035 0 0 1 0 2 PRKCSH chr19:11559803 5'GT 11559803 Upstream 23bp 17851 chr19 19788690 19788690 1 + G T UCEC 19788691 + 19788671 19788711 41 AGGACTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACC AGGACTCAGTGGCCTTTGATGATGTGGCTGTGAACTTCACC < 41bp 0.573796945513985 0.838282600318174 NA NA prediction 0.528971309608377 Functional Gain - ZNF101 ENSG00000181896 CDS Human protein_coding chr19:19788691 chr19:19788690 nonsynonymous SNV 0.167 0 20 hm7G_associated_SNPs_19038 0 0 0 0 1 ZNF101 chr19:19788673 3'AG 19788673 Downstream 18bp 17852 chr12 44166070 44166070 1 + G T UCEC 44166071 + 44166051 44166091 41 CCTTTCTGTGACAAAGACAGGACATTGATGACACCTGTGCA CCTTTCTGTGACAAAGACATGACATTGATGACACCTGTGCA < 41bp 0.469412491897046 0.764484763528226 NA NA prediction 0.528969527056453 Functional Gain - IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166071 chr12:44166070 nonsynonymous SNV 0.151 1 20 hm7G_associated_SNPs_19039 0 0 0 0 2 IRAK4 chr12:44165983 3'AG 44165983 Downstream 88bp 17853 chr12 44166070 44166070 1 + G T UCEC 44166071 + 44166051 44166091 41 CCTTTCTGTGACAAAGACAGGACATTGATGACACCTGTGCA CCTTTCTGTGACAAAGACATGACATTGATGACACCTGTGCA < 41bp 0.469412491897046 0.764484763528226 NA NA prediction 0.528969527056453 Functional Gain - IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166071 chr12:44166070 nonsynonymous SNV 0.151 1 20 hm7G_associated_SNPs_19039 0 0 0 0 2 IRAK4 chr12:44166165 5'GT 44166165 Upstream 96bp 17854 chr3 44893723 44893723 1 + G T UCEC 44893724 + 44893704 44893744 41 TGGAAATGTTAAGGAAGCAGGTGGAGTGTCTTGCTGAGGAA TGGAAATGTTAAGGAAGCATGTGGAGTGTCTTGCTGAGGAA < 41bp 0.45251840163572 0.764483931059628 NA NA prediction 0.528967862119257 Functional Gain - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44893724 chr3:44893723 nonsynonymous SNV 0.911 3 20 hm7G_associated_SNPs_19040 0 0 1 0 1 KIF15 chr3:44893700 3'AG 44893700 Downstream 24bp 17855 chr15 42821936 42821936 1 + G T THCA 42821937 + 42821917 42821957 41 CTCAAGTGGGCAGTATCCTGGGAAATCTAAAAGACATGGCC CTCAAGTGGGCAGTATCCTTGGAAATCTAAAAGACATGGCC < 41bp 0.585641648040269 0.85011843028538 NA NA prediction 0.528953564490223 Functional Gain - SNAP23 ENSG00000092531 CDS Human protein_coding chr15:42821937 chr15:42821936 synonymous SNV . 0 20 hm7G_associated_SNPs_19041 0 0 1 0 2 SNAP23 chr15:42821873 3'AG 42821873 Downstream 64bp 17856 chr15 42821936 42821936 1 + G T THCA 42821937 + 42821917 42821957 41 CTCAAGTGGGCAGTATCCTGGGAAATCTAAAAGACATGGCC CTCAAGTGGGCAGTATCCTTGGAAATCTAAAAGACATGGCC < 41bp 0.585641648040269 0.85011843028538 NA NA prediction 0.528953564490223 Functional Gain - SNAP23 ENSG00000092531 CDS Human protein_coding chr15:42821937 chr15:42821936 synonymous SNV . 0 20 hm7G_associated_SNPs_19041 0 0 1 0 2 SNAP23 chr15:42822017 5'GT 42822017 Upstream 82bp 17857 chr11 72554509 72554509 1 - C A LUAD 72554508 - 72554488 72554528 41 TGATTGAAGATGGAGATATGGAAGACTGGGTAAAGGTATAT TGATTGAAGATGGAGATATTGAAGACTGGGTAAAGGTATAT < 41bp 0.447478962569128 0.764473630905025 NA NA prediction 0.52894726181005 Functional Gain - FCHSD2 ENSG00000137478 CDS Human protein_coding chr11:72554508 chr11:72554509 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19043 0 0 1 0 2 FCHSD2 chr11:72554494 5'GT 72554494 Upstream 16bp 17858 chr11 72554509 72554509 1 - C A LUAD 72554508 - 72554488 72554528 41 TGATTGAAGATGGAGATATGGAAGACTGGGTAAAGGTATAT TGATTGAAGATGGAGATATTGAAGACTGGGTAAAGGTATAT < 41bp 0.447478962569128 0.764473630905025 NA NA prediction 0.52894726181005 Functional Gain - FCHSD2 ENSG00000137478 CDS Human protein_coding chr11:72554508 chr11:72554509 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19043 0 0 1 0 2 FCHSD2 chr11:72554577 3'AG 72554577 Downstream 69bp 17859 chr11 73611453 73611453 1 + G T COAD 73611454 + 73611434 73611474 41 CTGCGTGGTGACCTTCAAAGGTCACAAAGGAGGTATGAAGT CTGCGTGGTGACCTTCAAATGTCACAAAGGAGGTATGAAGT < 41bp 0.589766855845242 0.854238247943952 NA NA prediction 0.528942784197421 Functional Gain - PAAF1 ENSG00000175575 CDS Human protein_coding chr11:73611454 chr11:73611453 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19044 0 0 0 2 1 PAAF1 chr11:73611465 5'GT 73611465 Upstream 13bp 17860 chr16 4731766 4731766 1 + G T HNSC 4731767 + 4731747 4731787 41 AGGGCAGGCCGCAGAGCAAGGCCCCCGACAGGTGAGCAGCA AGGGCAGGCCGCAGAGCAATGCCCCCGACAGGTGAGCAGCA < 41bp 0.606357508636746 0.870826233105747 NA NA prediction 0.528937448938001 Functional Gain - MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4731767 chr16:4731766 nonsynonymous SNV 0.023 2 20 hm7G_associated_SNPs_19045 0 0 1 0 1 MGRN1 chr16:4731777 5'GT 4731777 Upstream 12bp 17861 chr9 140705949 140705949 1 + G T LUSC 140705950 + 140705930 140705970 41 GCACTGGGCGGCGTTCTCCGGCTGCGTGGACATAGCCGAGA GCACTGGGCGGCGTTCTCCTGCTGCGTGGACATAGCCGAGA < 41bp 0.42049679214932 0.764462315094978 NA NA prediction 0.528924630189956 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140705950 chr9:140705949 nonsynonymous SNV 0.644 4 20 hm7G_associated_SNPs_19047 0 0 1 0 1 EHMT1 chr9:140705913 3'AG 140705913 Downstream 37bp 17862 chr3 190106171 190106171 1 + G T UCEC 190106172 + 190106152 190106192 41 TTTGCCTTTTTCTCTGCTGGGTTTTTGATTGTGGCCACCTG TTTGCCTTTTTCTCTGCTGTGTTTTTGATTGTGGCCACCTG < 41bp 0.462289480832317 0.764431351685956 NA NA prediction 0.528862703371913 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190106172 chr3:190106171 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_19048 0 0 0 0 1 CLDN16 chr3:190106232 5'GT 190106232 Upstream 62bp 17863 chr1 166819590 166819590 1 + G T COAD 166819591 + 166819571 166819611 41 AATCGAGAGTGAGTTGCCAGGAGGAGGAGAACCACCAAAAG AATCGAGAGTGAGTTGCCATGAGGAGGAGAACCACCAAAAG < 41bp 0.453232402605494 0.764426928758361 NA NA prediction 0.528853857516723 Functional Gain - POGK ENSG00000143157 CDS Human protein_coding chr1:166819591 chr1:166819590 stopgain 0.376 0 20 hm7G_associated_SNPs_19050 0 0 1 0 1 POGK chr1:166819660 5'GT 166819660 Upstream 71bp 17864 chr2 177054164 177054164 1 + G T STAD 177054165 + 177054145 177054185 41 GAGTGGATGAAAGTGAAGAGGAATGCCTCTAAGAAAGGTAA GAGTGGATGAAAGTGAAGATGAATGCCTCTAAGAAAGGTAA < 41bp 0.585015434989089 0.849441484013118 NA NA prediction 0.528852098048059 Functional Gain - HOXD1 ENSG00000128645 CDS Human protein_coding chr2:177054165 chr2:177054164 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_19051 0 0 0 0 1 HOXD1 chr2:177054181 5'GT 177054181 Upstream 18bp 17865 chr5 176522377 176522377 1 + G T LUAD 176522378 + 176522358 176522398 41 ACCTGGTCTCGGAGATGGAGGTGATGAAGCTGATCGGCCGA ACCTGGTCTCGGAGATGGATGTGATGAAGCTGATCGGCCGA < 41bp 0.602991233586723 0.867416943035552 NA NA prediction 0.528851418897657 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522378 chr5:176522377 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19052 0 0 1 0 2 FGFR4 chr5:176522331 3'AG 176522331 Downstream 47bp 17866 chr5 176522377 176522377 1 + G T LUAD 176522378 + 176522358 176522398 41 ACCTGGTCTCGGAGATGGAGGTGATGAAGCTGATCGGCCGA ACCTGGTCTCGGAGATGGATGTGATGAAGCTGATCGGCCGA < 41bp 0.602991233586723 0.867416943035552 NA NA prediction 0.528851418897657 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522378 chr5:176522377 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19052 0 0 1 0 2 FGFR4 chr5:176522441 5'GT 176522441 Upstream 65bp 17867 chr19 21216321 21216321 1 + G T OV 21216322 + 21216302 21216342 41 TGGAGGAGTGGCAATGCCTGGACACTGCTCAGCAGGATTTG TGGAGGAGTGGCAATGCCTTGACACTGCTCAGCAGGATTTG < 41bp 0.436780513572913 0.764423124060482 NA NA prediction 0.528846248120963 Functional Gain - ZNF430 ENSG00000118620 CDS Human protein_coding chr19:21216322 chr19:21216321 synonymous SNV . 0 20 hm7G_associated_SNPs_19054 0 0 1 0 2 ZNF430 chr19:21216262 3'AG 21216262 Downstream 60bp 17868 chr19 21216321 21216321 1 + G T OV 21216322 + 21216302 21216342 41 TGGAGGAGTGGCAATGCCTGGACACTGCTCAGCAGGATTTG TGGAGGAGTGGCAATGCCTTGACACTGCTCAGCAGGATTTG < 41bp 0.436780513572913 0.764423124060482 NA NA prediction 0.528846248120963 Functional Gain - ZNF430 ENSG00000118620 CDS Human protein_coding chr19:21216322 chr19:21216321 synonymous SNV . 0 20 hm7G_associated_SNPs_19054 0 0 1 0 2 ZNF430 chr19:21216388 5'GT 21216388 Upstream 68bp 17869 chr1 210015674 210015674 1 + G T LUAD 210015675 + 210015655 210015695 41 GTAGACTTTTCTCGAGTGCGGATGTGGAGCCTCAATAATTG GTAGACTTTTCTCGAGTGCTGATGTGGAGCCTCAATAATTG < 41bp 0.447201539146983 0.764411777995645 NA NA prediction 0.52882355599129 Functional Gain - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210015675 chr1:210015674 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_19055 0 0 1 0 1 DIEXF chr1:210015610 3'AG 210015610 Downstream 65bp 17870 chr18 47101875 47101875 1 + G T LUSC 47101876 + 47101856 47101896 41 TTGGTATTCAGATGCCTGTGGGCCACATTGACATCTACCCC TTGGTATTCAGATGCCTGTTGGCCACATTGACATCTACCCC < 41bp 0.608866054917958 0.873276664627166 NA NA prediction 0.528821219418415 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101876 chr18:47101875 synonymous SNV . 0 20 hm7G_associated_SNPs_19056 0 0 0 0 1 LIPG chr18:47101960 5'GT 47101960 Upstream 86bp 17871 chrX 135067800 135067800 1 + G T LUAD 135067801 + 135067781 135067821 41 AGGGGCTTCGGACGGCGGCGGCGGAGAGGCTAGAGCCATGG AGGGGCTTCGGACGGCGGCTGCGGAGAGGCTAGAGCCATGG < 41bp 0.588166029805242 0.852573375416229 NA NA prediction 0.528814691221975 Functional Gain - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135067801 chrX:135067800 nonsynonymous SNV 0.125 2 20 hm7G_associated_SNPs_19057 0 0 0 0 1 SLC9A6 chrX:135067762 3'AG 135067762 Downstream 39bp 17872 chr2 29386732 29386732 1 + G T LGG 29386733 + 29386713 29386753 41 AGAGCTTGAAAAACCCCATGGCAAGAATGATGGTTCAGTTG AGAGCTTGAAAAACCCCATTGCAAGAATGATGGTTCAGTTG < 41bp 0.595715874604125 0.860115790017682 NA NA prediction 0.528799830827113 Functional Gain - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29386733 chr2:29386732 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_19058 0 0 1 0 2 CLIP4 chr2:29386697 3'AG 29386697 Downstream 36bp 17873 chr2 29386732 29386732 1 + G T LGG 29386733 + 29386713 29386753 41 AGAGCTTGAAAAACCCCATGGCAAGAATGATGGTTCAGTTG AGAGCTTGAAAAACCCCATTGCAAGAATGATGGTTCAGTTG < 41bp 0.595715874604125 0.860115790017682 NA NA prediction 0.528799830827113 Functional Gain - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29386733 chr2:29386732 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_19058 0 0 1 0 2 CLIP4 chr2:29386820 5'GT 29386820 Upstream 89bp 17874 chr8 6272399 6272399 1 + G T rs2305022 6272400 + 6272380 6272420 41 TCGTTTCGGTGCTCTGGGTGGAAAAGTAAGCAGTTTCTCTC TCGTTTCGGTGCTCTGGGTTGAAAAGTAAGCAGTTTCTCTC < 41bp 0.444234715540824 0.764372827965565 NA NA prediction 0.528745655931129 Functional Gain - MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6272400 chr8:6272399 synonymous SNV . 0 20 hm7G_associated_SNPs_19060 2 0 0 0 1 MCPH1 chr8:6272404 5'GT 6272404 Upstream 6bp 17875 chr3 129170825 129170825 1 + G T SARC 129170826 + 129170806 129170846 41 AAGACACTGTGTACTGTGTGGCATATGCGAAGGATGGTAAA AAGACACTGTGTACTGTGTTGCATATGCGAAGGATGGTAAA < 41bp 0.590398525660998 0.854766499186977 NA NA prediction 0.528735947051957 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129170826 chr3:129170825 synonymous SNV . 0 20 hm7G_associated_SNPs_19061 0 0 1 0 2 IFT122 chr3:129170757 3'AG 129170757 Downstream 69bp 17876 chr3 129170825 129170825 1 + G T SARC 129170826 + 129170806 129170846 41 AAGACACTGTGTACTGTGTGGCATATGCGAAGGATGGTAAA AAGACACTGTGTACTGTGTTGCATATGCGAAGGATGGTAAA < 41bp 0.590398525660998 0.854766499186977 NA NA prediction 0.528735947051957 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129170826 chr3:129170825 synonymous SNV . 0 20 hm7G_associated_SNPs_19061 0 0 1 0 2 IFT122 chr3:129170841 5'GT 129170841 Upstream 17bp 17877 chr19 985972 985972 1 + G T SARC 985973 + 985953 985993 41 CAGAAAGCATCCACCTGTGGGAGGTAAGAGGAGCAAAGCGT CAGAAAGCATCCACCTGTGTGAGGTAAGAGGAGCAAAGCGT < 41bp 0.60019277637265 0.864558430397265 NA NA prediction 0.52873130804923 Functional Gain - WDR18 ENSG00000065268 CDS Human protein_coding chr19:985973 chr19:985972 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_19062 0 0 0 0 1 WDR18 chr19:985975 5'GT 985975 Upstream 4bp 17878 chr7 116411960 116411960 1 + G T UCEC 116411961 + 116411941 116411981 41 CACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGT CACACTCCTCATTTGGATATGCTTGTAAGTGCCCGAAGTGT < 41bp 0.559799891994048 0.824133368590864 NA NA prediction 0.528666953193633 Functional Gain - MET ENSG00000105976 CDS Human protein_coding chr7:116411961 chr7:116411960 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19065 0 0 1 0 2 MET chr7:116411903 3'AG 116411903 Downstream 58bp 17879 chr7 116411960 116411960 1 + G T UCEC 116411961 + 116411941 116411981 41 CACACTCCTCATTTGGATAGGCTTGTAAGTGCCCGAAGTGT CACACTCCTCATTTGGATATGCTTGTAAGTGCCCGAAGTGT < 41bp 0.559799891994048 0.824133368590864 NA NA prediction 0.528666953193633 Functional Gain - MET ENSG00000105976 CDS Human protein_coding chr7:116411961 chr7:116411960 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19065 0 0 1 0 2 MET chr7:116412043 5'GT 116412043 Upstream 84bp 17880 chr1 212519229 212519229 1 + G T SKCM 212519230 + 212519210 212519250 41 AATTTATGGGAAATTTCTTGGATTAAGAGCATTCATCAGAA AATTTATGGGAAATTTCTTTGATTAAGAGCATTCATCAGAA < 41bp 0.585092849495526 0.849419776212917 NA NA prediction 0.528653853434783 Functional Gain - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212519230 chr1:212519229 stopgain 1.000 1 20 hm7G_associated_SNPs_19066 0 0 1 0 2 PPP2R5A chr1:212519145 3'AG 212519145 Downstream 85bp 17881 chr1 212519229 212519229 1 + G T SKCM 212519230 + 212519210 212519250 41 AATTTATGGGAAATTTCTTGGATTAAGAGCATTCATCAGAA AATTTATGGGAAATTTCTTTGATTAAGAGCATTCATCAGAA < 41bp 0.585092849495526 0.849419776212917 NA NA prediction 0.528653853434783 Functional Gain - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212519230 chr1:212519229 stopgain 1.000 1 20 hm7G_associated_SNPs_19066 0 0 1 0 2 PPP2R5A chr1:212519275 5'GT 212519275 Upstream 47bp 17882 chr5 68568859 68568859 1 + G T LIHC 68568860 + 68568840 68568880 41 ATCCATGTGCTCGAATTACGGCCACACAGGTATTTTGGTGT ATCCATGTGCTCGAATTACTGCCACACAGGTATTTTGGTGT < 41bp 0.567205801959556 0.83152833070452 NA NA prediction 0.528645057489927 Functional Gain - CDK7 ENSG00000134058 CDS Human protein_coding chr5:68568860 chr5:68568859 synonymous SNV . 0 20 hm7G_associated_SNPs_19067 0 0 0 0 1 CDK7 chr5:68568868 5'GT 68568868 Upstream 10bp 17883 chr10 135027589 135027589 1 + G T LUSC 135027590 + 135027570 135027610 41 GCAGATGACGTCAGCACCTGGGTGGCTGCAGAGATTGTGAC GCAGATGACGTCAGCACCTTGGTGGCTGCAGAGATTGTGAC < 41bp 0.420549200631673 0.764265545032901 NA NA prediction 0.528531090065802 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135027590 chr10:135027589 nonsynonymous SNV 0.950 4 20 hm7G_associated_SNPs_19071 0 0 0 0 1 KNDC1 chr10:135027626 5'GT 135027626 Upstream 38bp 17884 chr7 34867127 34867127 1 + G T SKCM 34867128 + 34867108 34867148 41 AACGGTGAAGTGCAGTGCTGGGCCCTGTGGCCTGACGACTC AACGGTGAAGTGCAGTGCTTGGCCCTGTGGCCTGACGACTC < 41bp 0.432033311444056 0.764254378308603 NA NA prediction 0.528508756617205 Functional Gain - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34867128 chr7:34867127 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19074 0 0 0 0 1 NPSR1 chr7:34867214 5'GT 34867214 Upstream 88bp 17885 chr1 64707384 64707384 1 + G T LUSC 64707385 + 64707365 64707405 41 ATTACAAATGGAAGAAAATGGATCTACAGCATCAGAAAGAA ATTACAAATGGAAGAAAATTGATCTACAGCATCAGAAAGAA < 41bp 0.565187160926481 0.829408745810736 NA NA prediction 0.528443169768509 Functional Gain - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64707385 chr1:64707384 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_19078 0 0 0 0 2 UBE2U chr1:64707335 3'AG 64707335 Downstream 50bp 17886 chr1 64707384 64707384 1 + G T LUSC 64707385 + 64707365 64707405 41 ATTACAAATGGAAGAAAATGGATCTACAGCATCAGAAAGAA ATTACAAATGGAAGAAAATTGATCTACAGCATCAGAAAGAA < 41bp 0.565187160926481 0.829408745810736 NA NA prediction 0.528443169768509 Functional Gain - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64707385 chr1:64707384 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_19078 0 0 0 0 2 UBE2U chr1:64707416 5'GT 64707416 Upstream 33bp 17887 chr4 144474311 144474311 1 + G T CHOL 144474312 + 144474292 144474332 41 TGGCGCACCTGATGGTCGAGGAAGAAAAAAGAAGCTGAAAC TGGCGCACCTGATGGTCGATGAAGAAAAAAGAAGCTGAAAC < 41bp 0.545118728063269 0.80933134257642 NA NA prediction 0.528425229026303 Functional Gain - SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144474312 chr4:144474311 stopgain 0.996 1 20 hm7G_associated_SNPs_19080 0 0 1 0 1 SMARCA5 chr4:144474272 3'AG 144474272 Downstream 40bp 17888 chr5 137521347 137521347 1 + G T UCEC 137521348 + 137521328 137521368 41 CCACCCAGCAGCTTCAGGAGGTTAAAGCTAAATTACAGCAG CCACCCAGCAGCTTCAGGATGTTAAAGCTAAATTACAGCAG < 41bp 0.59202783141647 0.856237504567462 NA NA prediction 0.528419346301985 Functional Gain - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137521348 chr5:137521347 nonsynonymous SNV 0.980 0 20 hm7G_associated_SNPs_19081 0 0 1 0 1 KIF20A chr5:137521399 5'GT 137521399 Upstream 53bp 17889 chr7 141424951 141424951 1 + G T COAD 141424952 + 141424932 141424972 41 TCCGCAAGGGTAACTTTCCGGACGTTCCTCAGGAGCTCTCA TCCGCAAGGGTAACTTTCCTGACGTTCCTCAGGAGCTCTCA < 41bp 0.443828231592371 0.76420567553279 NA NA prediction 0.528411351065579 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141424952 chr7:141424951 synonymous SNV . 0 20 hm7G_associated_SNPs_19082 0 0 0 0 1 WEE2 chr7:141424996 5'GT 141424996 Upstream 46bp 17890 chr1 162731083 162731083 1 + G T HNSC 162731084 + 162731064 162731104 41 CGCTCTGAAGCCAGTGAGTGGGAACCTAATGCCATTTCCTT CGCTCTGAAGCCAGTGAGTTGGAACCTAATGCCATTTCCTT < 41bp 0.425006829228068 0.764200816625381 NA NA prediction 0.528401633250761 Functional Gain - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162731084 chr1:162731083 nonsynonymous SNV 0.864 4 20 hm7G_associated_SNPs_19084 0 0 0 0 1 DDR2 chr1:162731001 3'AG 162731001 Downstream 83bp 17891 chr7 158734681 158734681 1 + G T LUAD 158734682 + 158734662 158734702 41 CGTTTCCGCTCCTGCAGTGGGACAGCAGCACGGACAGCCAT CGTTTCCGCTCCTGCAGTGTGACAGCAGCACGGACAGCCAT < 41bp 0.602213874064066 0.866412860487207 NA NA prediction 0.528397972846282 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158734682 chr7:158734681 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_19085 0 0 1 0 1 WDR60 chr7:158734616 3'AG 158734616 Downstream 66bp 17892 chr18 61650839 61650839 1 + G T GBM 61650840 + 61650820 61650860 41 TTCAGAGGTACTGGATGCTGGGACAGTCGATCCCCTGACAA TTCAGAGGTACTGGATGCTTGGACAGTCGATCCCCTGACAA < 41bp 0.601833008564659 0.866004174877832 NA NA prediction 0.528342332626345 Functional Gain - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61650840 chr18:61650839 nonsynonymous SNV 0.044 5 20 hm7G_associated_SNPs_19087 0 0 0 0 1 SERPINB8 chr18:61650813 3'AG 61650813 Downstream 27bp 17893 chr1 236347099 236347099 1 + G T UCEC 236347100 + 236347080 236347120 41 AGATTTGAAGAATCAGCTGGGAGATGCTGGATACGTATTAT AGATTTGAAGAATCAGCTGTGAGATGCTGGATACGTATTAT < 41bp 0.587430813900159 0.851579475020596 NA NA prediction 0.528297322240873 Functional Gain - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236347100 chr1:236347099 stopgain 0.786 1 20 hm7G_associated_SNPs_19088 0 0 1 1 1 GPR137B chr1:236347078 3'AG 236347078 Downstream 22bp 17894 chr17 72588188 72588188 1 + G T BRCA 72588189 + 72588169 72588209 41 AATGAATATGGGCATGGATGGATGAATTGGCGCTGTCATTT AATGAATATGGGCATGGATTGATGAATTGGCGCTGTCATTT < 41bp 0.479387958352421 0.764143056368639 NA NA prediction 0.528286112737278 Functional Gain - C17orf77 ENSG00000182352 CDS Human antisense chr17:72588189 chr17:72588188 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_19090 0 0 0 0 1 C17orf77 chr17:72588123 3'AG 72588123 Downstream 66bp 17895 chr7 38256859 38256859 1 + G T LUSC 38256860 + 38256840 38256880 41 CTTGCCTGGATTGAGACGTGGTTCCTGGATTTCAAAGTGTT CTTGCCTGGATTGAGACGTTGTTCCTGGATTTCAAAGTGTT < 41bp 0.580118177485959 0.844251347925004 NA NA prediction 0.52826634087809 Functional Gain - STARD3NL ENSG00000010270 CDS Human protein_coding chr7:38256860 chr7:38256859 nonsynonymous SNV 0.965 4 20 hm7G_associated_SNPs_19092 0 0 1 0 2 STARD3NL chr7:38256789 3'AG 38256789 Downstream 71bp 17896 chr7 38256859 38256859 1 + G T LUSC 38256860 + 38256840 38256880 41 CTTGCCTGGATTGAGACGTGGTTCCTGGATTTCAAAGTGTT CTTGCCTGGATTGAGACGTTGTTCCTGGATTTCAAAGTGTT < 41bp 0.580118177485959 0.844251347925004 NA NA prediction 0.52826634087809 Functional Gain - STARD3NL ENSG00000010270 CDS Human protein_coding chr7:38256860 chr7:38256859 nonsynonymous SNV 0.965 4 20 hm7G_associated_SNPs_19092 0 0 1 0 2 STARD3NL chr7:38256906 5'GT 38256906 Upstream 48bp 17897 chrX 49093601 49093601 1 + G T GBM 49093602 + 49093582 49093622 41 GCGCCTTCACCACTGAGCTGGTTGTAGAGGCTGTGGTCCGC GCGCCTTCACCACTGAGCTTGTTGTAGAGGCTGTGGTCCGC < 41bp 0.603586842443499 0.867691571561824 NA NA prediction 0.528209458236649 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093602 chrX:49093601 synonymous SNV . 0 20 hm7G_associated_SNPs_19094 0 0 0 0 1 CCDC22 chrX:49093553 3'AG 49093553 Downstream 49bp 17898 chr20 10030080 10030080 1 + G T LUAD 10030081 + 10030061 10030101 41 TTAGATCATAAAACGCCCAGGGCTGTGGCTAAGGAAGGCGG TTAGATCATAAAACGCCCATGGCTGTGGCTAAGGAAGGCGG < 41bp 0.600128437583718 0.864215079594042 NA NA prediction 0.52817328402065 Functional Gain - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10030081 chr20:10030080 nonsynonymous SNV 0.255 3 20 hm7G_associated_SNPs_19096 0 0 0 0 1 ANKEF1 chr20:10030038 3'AG 10030038 Downstream 43bp 17899 chr14 68114884 68114884 1 + G T UCEC 68114885 + 68114865 68114905 41 AAGGCATGTATATTGCTGAGGAAATACACAATACAGGTATG AAGGCATGTATATTGCTGATGAAATACACAATACAGGTATG < 41bp 0.58667047471499 0.850732580930339 NA NA prediction 0.528124212430698 Functional Gain - ARG2 ENSG00000081181 CDS Human protein_coding chr14:68114885 chr14:68114884 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_19098 0 0 1 0 1 ARG2 chr14:68114900 5'GT 68114900 Upstream 17bp 17900 chr12 122676108 122676108 1 + G T OV 122676109 + 122676089 122676129 41 ATGAGTCCGCGGGCGTCCTGGCCGAGGTGTGCCCTGGTCTG ATGAGTCCGCGGGCGTCCTTGCCGAGGTGTGCCCTGGTCTG < 41bp 0.428272446362626 0.764044226159999 NA NA prediction 0.528088452319999 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122676109 chr12:122676108 synonymous SNV . 0 20 hm7G_associated_SNPs_19100 0 0 0 0 1 LRRC43 chr12:122676114 5'GT 122676114 Upstream 7bp 17901 chr18 77464788 77464788 1 + G T LUAD 77464789 + 77464769 77464809 41 CATCTTTCACTTCCAGCTGGGCCGGGGTGAGCCCATGCTGC CATCTTTCACTTCCAGCTGTGCCGGGGTGAGCCCATGCTGC < 41bp 0.605189510615348 0.869232113438751 NA NA prediction 0.528085205646807 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77464789 chr18:77464788 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19101 0 0 1 0 1 CTDP1 chr18:77464767 3'AG 77464767 Downstream 22bp 17902 chr12 52307552 52307552 1 + G T COAD 52307553 + 52307533 52307573 41 GCAGGGCGACAGCATGTTGGGGGTATGGGCCTGGGGACCTG GCAGGGCGACAGCATGTTGTGGGTATGGGCCTGGGGACCTG < 41bp 0.606850572407287 0.870858737077569 NA NA prediction 0.528016329340566 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52307553 chr12:52307552 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_19105 0 0 0 0 1 ACVRL1 chr12:52307554 5'GT 52307554 Upstream 3bp 17903 chr2 99136550 99136550 1 + G T CESC 99136551 + 99136531 99136571 41 GCCCTCGCCATGGTGCCAGGGCCCGTGCAATGCAGCGGGCT GCCCTCGCCATGGTGCCAGTGCCCGTGCAATGCAGCGGGCT < 41bp 0.422884463231947 0.764003435677239 NA NA prediction 0.528006871354478 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99136551 chr2:99136550 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19106 0 0 1 0 1 INPP4A chr2:99136617 5'GT 99136617 Upstream 68bp 17904 chr14 100793541 100793541 1 + G T SKCM 100793542 + 100793522 100793562 41 TAGGTGTGGGGCTTCTACCGGGGCCTCTCGCTGCCCGTGTG TAGGTGTGGGGCTTCTACCTGGGCCTCTCGCTGCCCGTGTG < 41bp 0.471295656909566 0.763995165135492 NA NA prediction 0.527990330270984 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100793542 chr14:100793541 nonsynonymous SNV 0.853 3 20 hm7G_associated_SNPs_19107 0 0 1 0 1 SLC25A47 chr14:100793525 3'AG 100793525 Downstream 17bp 17905 chr11 86131078 86131078 1 + G T STAD 86131079 + 86131059 86131099 41 AGAAGCAGCGAGACCTGGAGGACAAGGCTTTTGAACGGTAA AGAAGCAGCGAGACCTGGATGACAAGGCTTTTGAACGGTAA < 41bp 0.58444905729731 0.848426438328941 NA NA prediction 0.527954762063262 Functional Gain - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86131079 chr11:86131078 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19108 0 0 0 0 1 CCDC81 chr11:86131095 5'GT 86131095 Upstream 18bp 17906 chr7 34889213 34889213 1 + G T LUAD 34889214 + 34889194 34889234 41 ATTCCAGAATGACGTTCCGGGAGAGAACTGAGAGGCATGAG ATTCCAGAATGACGTTCCGTGAGAGAACTGAGAGGCATGAG < 41bp 0.570760530672066 0.834736795679598 NA NA prediction 0.527952530015064 Functional Gain - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34889214 chr7:34889213 stopgain 0.198 0 20 hm7G_associated_SNPs_19109 0 0 0 0 1 NPSR1 chr7:34889177 3'AG 34889177 Downstream 37bp 17907 chr6 33381192 33381192 1 + G T CESC 33381193 + 33381173 33381213 41 CCTGTCTCTGCAGAGGGGAGGTGCCCTGAAGAAGGGCCCCT CCTGTCTCTGCAGAGGGGATGTGCCCTGAAGAAGGGCCCCT < 41bp 0.488723183839581 0.763940071604071 NA NA prediction 0.527880143208141 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33381193 chr6:33381192 nonsynonymous SNV 0.974 5 20 hm7G_associated_SNPs_19113 0 0 1 0 1 PHF1 chr6:33381186 3'AG 33381186 Downstream 7bp 17908 chr2 135621102 135621102 1 + G T SKCM 135621103 + 135621083 135621123 41 AGCTGGCGGTCAAGGAGATGGAGCGCTGTGTGAAAGAGCTG AGCTGGCGGTCAAGGAGATTGAGCGCTGTGTGAAAGAGCTG < 41bp 0.608912388799699 0.872843581431662 NA NA prediction 0.527862385263927 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135621103 chr2:135621102 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19115 0 0 0 0 1 ACMSD chr2:135621201 5'GT 135621201 Upstream 100bp 17909 chr1 156877929 156877929 1 + G T MESO 156877930 + 156877910 156877950 41 AGGTGCCCAGGTGCCGGGAGGAGTGCCCGGTGGGCCGCTTT AGGTGCCCAGGTGCCGGGATGAGTGCCCGGTGGGCCGCTTT < 41bp 0.606265558508135 0.870195390728857 NA NA prediction 0.527859664441445 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156877930 chr1:156877929 nonsynonymous SNV 0.909 2 20 hm7G_associated_SNPs_19116 0 0 0 0 1 PEAR1 chr1:156877920 3'AG 156877920 Downstream 10bp 17910 chr10 90365424 90365424 1 + G T SARC 90365425 + 90365405 90365445 41 CATTTGAAAGCTTATGACTGGGGCAGTCCTGATCTGAACTT CATTTGAAAGCTTATGACTTGGGCAGTCCTGATCTGAACTT < 41bp 0.471941290424451 0.763915195920695 NA NA prediction 0.527830391841389 Functional Gain - LIPJ ENSG00000204022 CDS Human protein_coding chr10:90365425 chr10:90365424 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_19117 0 0 0 0 2 LIPJ chr10:90365390 3'AG 90365390 Downstream 35bp 17911 chr10 90365424 90365424 1 + G T SARC 90365425 + 90365405 90365445 41 CATTTGAAAGCTTATGACTGGGGCAGTCCTGATCTGAACTT CATTTGAAAGCTTATGACTTGGGCAGTCCTGATCTGAACTT < 41bp 0.471941290424451 0.763915195920695 NA NA prediction 0.527830391841389 Functional Gain - LIPJ ENSG00000204022 CDS Human protein_coding chr10:90365425 chr10:90365424 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_19117 0 0 0 0 2 LIPJ chr10:90365461 5'GT 90365461 Upstream 38bp 17912 chr12 72372794 72372794 1 + G T LUAD 72372795 + 72372775 72372815 41 CCCACGAGACTTTCTGGCAGGACTGGCCTACAGAGTGTTCC CCCACGAGACTTTCTGGCATGACTGGCCTACAGAGTGTTCC < 41bp 0.599330711571191 0.863232789056644 NA NA prediction 0.527804154970905 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72372795 chr12:72372794 stopgain 0.956 1 20 hm7G_associated_SNPs_19118 0 0 0 0 2 TPH2 chr12:72372732 3'AG 72372732 Downstream 63bp 17913 chr12 72372794 72372794 1 + G T LUAD 72372795 + 72372775 72372815 41 CCCACGAGACTTTCTGGCAGGACTGGCCTACAGAGTGTTCC CCCACGAGACTTTCTGGCATGACTGGCCTACAGAGTGTTCC < 41bp 0.599330711571191 0.863232789056644 NA NA prediction 0.527804154970905 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72372795 chr12:72372794 stopgain 0.956 1 20 hm7G_associated_SNPs_19118 0 0 0 0 2 TPH2 chr12:72372867 5'GT 72372867 Upstream 74bp 17914 chr1 26510958 26510958 1 + G T LUAD 26510959 + 26510939 26510979 41 CCAGCCATACTCCCAGCAGGGGTAGCAGGGACTCCAGGGCT CCAGCCATACTCCCAGCAGTGGTAGCAGGGACTCCAGGGCT < 41bp 0.428368141989163 0.763897327120991 NA NA prediction 0.527794654241982 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26510959 chr1:26510958 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_19119 0 0 0 0 2 CNKSR1 chr1:26510892 3'AG 26510892 Downstream 67bp 17915 chr1 26510958 26510958 1 + G T LUAD 26510959 + 26510939 26510979 41 CCAGCCATACTCCCAGCAGGGGTAGCAGGGACTCCAGGGCT CCAGCCATACTCCCAGCAGTGGTAGCAGGGACTCCAGGGCT < 41bp 0.428368141989163 0.763897327120991 NA NA prediction 0.527794654241982 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26510959 chr1:26510958 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_19119 0 0 0 0 2 CNKSR1 chr1:26510998 5'GT 26510998 Upstream 41bp 17916 chr11 70202325 70202325 1 + G T LUSC 70202326 + 70202306 70202346 41 TGGGACTTAGCAAATTGGGGGGACAGGCTGAAAAAAATCGT TGGGACTTAGCAAATTGGGTGGACAGGCTGAAAAAAATCGT < 41bp 0.438847999976288 0.763879833636744 NA NA prediction 0.527759667273489 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70202326 chr11:70202325 synonymous SNV . 0 20 hm7G_associated_SNPs_19121 0 0 1 0 1 PPFIA1 chr11:70202267 3'AG 70202267 Downstream 59bp 17917 chr7 31015455 31015455 1 + G T LUSC 31015456 + 31015436 31015476 41 GAAACTGGAGCCAGCTCAGGGCAGCCTCCATACCCAGTCTC GAAACTGGAGCCAGCTCAGTGCAGCCTCCATACCCAGTCTC < 41bp 0.422715952046723 0.76387868331062 NA NA prediction 0.527757366621241 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31015456 chr7:31015455 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_19122 0 0 0 0 2 GHRHR chr7:31015392 3'AG 31015392 Downstream 64bp 17918 chr7 31015455 31015455 1 + G T LUSC 31015456 + 31015436 31015476 41 GAAACTGGAGCCAGCTCAGGGCAGCCTCCATACCCAGTCTC GAAACTGGAGCCAGCTCAGTGCAGCCTCCATACCCAGTCTC < 41bp 0.422715952046723 0.76387868331062 NA NA prediction 0.527757366621241 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31015456 chr7:31015455 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_19122 0 0 0 0 2 GHRHR chr7:31015483 5'GT 31015483 Upstream 29bp 17919 chr2 220402671 220402671 1 + G T rs11689281 220402672 + 220402652 220402692 41 CAGAGTCCCTGCCCGAGCCGGGGCCGAGTGGAGGGTGGGGG CAGAGTCCCTGCCCGAGCCTGGGCCGAGTGGAGGGTGGGGG < 41bp 0.44285136167431 0.763875959773096 NA NA prediction 0.527751919546192 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220402672 chr2:220402671 nonsynonymous SNV 0.631 0 20 hm7G_associated_SNPs_19123 0 0 1 0 1 ASIC4 chr2:220402655 3'AG 220402655 Downstream 17bp 17920 chr20 34843594 34843594 1 + G T KIRC 34843595 + 34843575 34843615 41 CTGACCAAGAAGTTCCGGTGGGACTTTGCTGCGGAACCTGA CTGACCAAGAAGTTCCGGTTGGACTTTGCTGCGGAACCTGA < 41bp 0.58755736057972 0.851425689157743 NA NA prediction 0.527736657156045 Functional Gain - AAR2 ENSG00000131043 CDS Human protein_coding chr20:34843595 chr20:34843594 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_19124 0 0 1 0 1 AAR2 chr20:34843500 3'AG 34843500 Downstream 95bp 17921 chr11 68204446 68204446 1 + G T SARC 68204447 + 68204427 68204467 41 CTTCCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTG CTTCCCCGACTGTATCGACTGCTCCGACGAGCTCATGTGTG < 41bp 0.432411888642015 0.763861142669932 NA NA prediction 0.527722285339865 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204447 chr11:68204446 nonsynonymous SNV 0.247 4 20 hm7G_associated_SNPs_19125 0 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 90bp 17922 chr11 68204446 68204446 1 + G T SARC 68204447 + 68204427 68204467 41 CTTCCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGTG CTTCCCCGACTGTATCGACTGCTCCGACGAGCTCATGTGTG < 41bp 0.432411888642015 0.763861142669932 NA NA prediction 0.527722285339865 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204447 chr11:68204446 nonsynonymous SNV 0.247 4 20 hm7G_associated_SNPs_19125 0 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 22bp 17923 chr8 126015427 126015427 1 + G T UCEC 126015428 + 126015408 126015448 41 TTTTAAACAGCGCAGAAAAGGAACCAATATTTCAGAAACAA TTTTAAACAGCGCAGAAAATGAACCAATATTTCAGAAACAA < 41bp 0.455321643816138 0.763854973393882 NA NA prediction 0.527709946787764 Functional Gain - SQLE ENSG00000104549 CDS Human protein_coding chr8:126015428 chr8:126015427 stopgain 0.983 0 20 hm7G_associated_SNPs_19128 0 0 1 0 1 SQLE chr8:126015418 3'AG 126015418 Downstream 10bp 17924 chr9 140638453 140638453 1 + G T LUAD 140638454 + 140638434 140638474 41 GGAGCTCGAGGAGGACGACGGCCATGGTGCAGAGCAGGCGG GGAGCTCGAGGAGGACGACTGCCATGGTGCAGAGCAGGCGG < 41bp 0.413800417778894 0.763845793863852 NA NA prediction 0.527691587727705 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140638454 chr9:140638453 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_19131 0 0 1 0 2 EHMT1 chr9:140638354 3'AG 140638354 Downstream 100bp 17925 chr9 140638453 140638453 1 + G T LUAD 140638454 + 140638434 140638474 41 GGAGCTCGAGGAGGACGACGGCCATGGTGCAGAGCAGGCGG GGAGCTCGAGGAGGACGACTGCCATGGTGCAGAGCAGGCGG < 41bp 0.413800417778894 0.763845793863852 NA NA prediction 0.527691587727705 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140638454 chr9:140638453 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_19131 0 0 1 0 2 EHMT1 chr9:140638542 5'GT 140638542 Upstream 90bp 17926 chr6 149893462 149893462 1 + G T LUSC 149893463 + 149893443 149893483 41 CTACACTGAAAGATGATGGGGACATATCTAAACAGCAGGTT CTACACTGAAAGATGATGGTGACATATCTAAACAGCAGGTT < 41bp 0.44772584191376 0.763831598692398 NA NA prediction 0.527663197384796 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149893463 chr6:149893462 synonymous SNV . 0 20 hm7G_associated_SNPs_19133 0 0 1 0 2 GINM1 chr6:149893421 3'AG 149893421 Downstream 42bp 17927 chr6 149893462 149893462 1 + G T LUSC 149893463 + 149893443 149893483 41 CTACACTGAAAGATGATGGGGACATATCTAAACAGCAGGTT CTACACTGAAAGATGATGGTGACATATCTAAACAGCAGGTT < 41bp 0.44772584191376 0.763831598692398 NA NA prediction 0.527663197384796 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149893463 chr6:149893462 synonymous SNV . 0 20 hm7G_associated_SNPs_19133 0 0 1 0 2 GINM1 chr6:149893480 5'GT 149893480 Upstream 19bp 17928 chr2 25356260 25356260 1 + G T UCEC 25356261 + 25356241 25356281 41 CTGGTCTACAGGGAGAATAGGAACCGTCTGACCCAGATTAT CTGGTCTACAGGGAGAATATGAACCGTCTGACCCAGATTAT < 41bp 0.434403185476424 0.76382784170203 NA NA prediction 0.527655683404061 Functional Gain - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25356261 chr2:25356260 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19134 0 0 0 0 2 EFR3B chr2:25356252 3'AG 25356252 Downstream 9bp 17929 chr2 25356260 25356260 1 + G T UCEC 25356261 + 25356241 25356281 41 CTGGTCTACAGGGAGAATAGGAACCGTCTGACCCAGATTAT CTGGTCTACAGGGAGAATATGAACCGTCTGACCCAGATTAT < 41bp 0.434403185476424 0.76382784170203 NA NA prediction 0.527655683404061 Functional Gain - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25356261 chr2:25356260 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19134 0 0 0 0 2 EFR3B chr2:25356303 5'GT 25356303 Upstream 44bp 17930 chr1 212615936 212615936 1 + G T COAD 212615937 + 212615917 212615957 41 CCATCTACTTGGCAGTGAAGGGAGTGGTGTTTGATGTCACC CCATCTACTTGGCAGTGAATGGAGTGGTGTTTGATGTCACC < 41bp 0.599410943091648 0.863231977177818 NA NA prediction 0.52764206817234 Functional Gain - NENF ENSG00000117691 CDS Human protein_coding chr1:212615937 chr1:212615936 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_19135 0 0 1 0 1 NENF chr1:212615907 3'AG 212615907 Downstream 30bp 17931 chr6 32609792 32609792 1 + G T LUSC 32609793 + 32609773 32609813 41 CCAAGTCTCCCGTGACACTGGGTCAGCCCAACACCCTCATT CCAAGTCTCCCGTGACACTTGGTCAGCCCAACACCCTCATT < 41bp 0.593073271005622 0.8568680570268 NA NA prediction 0.527589572042356 Functional Gain - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609793 chr6:32609792 synonymous SNV . 0 20 hm7G_associated_SNPs_19137 0 0 0 0 1 HLA-DQA1 chr6:32609749 3'AG 32609749 Downstream 44bp 17932 chr4 74363443 74363443 1 + G T SKCM 74363444 + 74363424 74363464 41 GTAAACATTTCCAGAATTTGGGGAAGGATGGTTTGAAATAC GTAAACATTTCCAGAATTTTGGGAAGGATGGTTTGAAATAC < 41bp 0.573598723314558 0.837387372192046 NA NA prediction 0.527577297754976 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74363444 chr4:74363443 nonsynonymous SNV 0.014 3 20 hm7G_associated_SNPs_19138 0 0 0 0 2 AFM chr4:74363369 3'AG 74363369 Downstream 75bp 17933 chr4 74363443 74363443 1 + G T SKCM 74363444 + 74363424 74363464 41 GTAAACATTTCCAGAATTTGGGGAAGGATGGTTTGAAATAC GTAAACATTTCCAGAATTTTGGGAAGGATGGTTTGAAATAC < 41bp 0.573598723314558 0.837387372192046 NA NA prediction 0.527577297754976 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74363444 chr4:74363443 nonsynonymous SNV 0.014 3 20 hm7G_associated_SNPs_19138 0 0 0 0 2 AFM chr4:74363466 5'GT 74363466 Upstream 24bp 17934 chr2 234072416 234072416 1 + G T THCA 234072417 + 234072397 234072437 41 AAGGGGCAGGGAAAGACGCGGGACGACTCTGCGGACTACAT AAGGGGCAGGGAAAGACGCTGGACGACTCTGCGGACTACAT < 41bp 0.42342339740545 0.763781799032429 NA NA prediction 0.527563598064859 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234072417 chr2:234072416 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_19139 0 0 1 0 1 INPP5D chr2:234072353 3'AG 234072353 Downstream 64bp 17935 chr21 45483506 45483506 1 + G T LUSC 45483507 + 45483487 45483527 41 CCCATAGATATGGAGAAGCGGGAATCGATCCAGAGGCGAGA CCCATAGATATGGAGAAGCTGGAATCGATCCAGAGGCGAGA < 41bp 0.600834444996414 0.86457404654004 NA NA prediction 0.527479203087252 Functional Gain - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45483507 chr21:45483506 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_19145 0 0 1 0 1 TRAPPC10 chr21:45483419 3'AG 45483419 Downstream 88bp 17936 chr5 72383454 72383454 1 + G T UCEC 72383455 + 72383435 72383475 41 AAAATTTGATCTTTCAGAAGGACCTAGTAAACCCACGACAC AAAATTTGATCTTTCAGAATGACCTAGTAAACCCACGACAC < 41bp 0.579729600207977 0.843462549066412 NA NA prediction 0.52746589771687 Functional Gain - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72383455 chr5:72383454 stopgain 0.998 1 20 hm7G_associated_SNPs_19147 0 0 1 0 1 FCHO2 chr5:72383416 3'AG 72383416 Downstream 39bp 17937 chr3 14963935 14963935 1 + G T COAD 14963936 + 14963916 14963956 41 AGATACGAGAGAGGCTGGGGGTTAGCCTTGGGGAGAGGCCC AGATACGAGAGAGGCTGGGTGTTAGCCTTGGGGAGAGGCCC < 41bp 0.602409106231175 0.866133224159333 NA NA prediction 0.527448235856317 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14963936 chr3:14963935 synonymous SNV . 0 20 hm7G_associated_SNPs_19150 0 0 0 0 1 FGD5 chr3:14963918 3'AG 14963918 Downstream 18bp 17938 chr7 23775246 23775246 1 + G T LUAD 23775247 + 23775227 23775267 41 ATGGAACAGTTATTGCTCAGGCTGAGTATGGCAGTGTGGAT ATGGAACAGTTATTGCTCATGCTGAGTATGGCAGTGTGGAT < 41bp 0.593005805380236 0.856723887665172 NA NA prediction 0.527436164569872 Functional Gain - STK31 ENSG00000196335 CDS Human protein_coding chr7:23775247 chr7:23775246 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19152 0 0 0 0 1 STK31 chr7:23775157 3'AG 23775157 Downstream 90bp 17939 chr17 27183543 27183543 1 + G T COAD 27183544 + 27183524 27183564 41 TGTTCCCTGTTTCCAGGAAGGTGCATACTACTCGCTGCCAA TGTTCCCTGTTTCCAGGAATGTGCATACTACTCGCTGCCAA < 41bp 0.437650075080687 0.763718003869273 NA NA prediction 0.527436007738546 Functional Gain - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27183544 chr17:27183543 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19153 0 0 1 0 2 ERAL1 chr17:27183523 3'AG 27183523 Downstream 21bp 17940 chr17 27183543 27183543 1 + G T COAD 27183544 + 27183524 27183564 41 TGTTCCCTGTTTCCAGGAAGGTGCATACTACTCGCTGCCAA TGTTCCCTGTTTCCAGGAATGTGCATACTACTCGCTGCCAA < 41bp 0.437650075080687 0.763718003869273 NA NA prediction 0.527436007738546 Functional Gain - ERAL1 ENSG00000132591 CDS Human protein_coding chr17:27183544 chr17:27183543 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19153 0 0 1 0 2 ERAL1 chr17:27183600 5'GT 27183600 Upstream 58bp 17941 chrX 10058865 10058865 1 + G T LUSC 10058866 + 10058846 10058886 41 ACAAACTGGATGAGGCGCAGGCTATCATGAGTGAGCTCCGG ACAAACTGGATGAGGCGCATGCTATCATGAGTGAGCTCCGG < 41bp 0.584844844572066 0.848549449728685 NA NA prediction 0.527409210313237 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10058866 chrX:10058865 nonsynonymous SNV 0.813 4 20 hm7G_associated_SNPs_19155 0 0 0 0 2 WWC3 chrX:10058811 3'AG 10058811 Downstream 55bp 17942 chrX 10058865 10058865 1 + G T LUSC 10058866 + 10058846 10058886 41 ACAAACTGGATGAGGCGCAGGCTATCATGAGTGAGCTCCGG ACAAACTGGATGAGGCGCATGCTATCATGAGTGAGCTCCGG < 41bp 0.584844844572066 0.848549449728685 NA NA prediction 0.527409210313237 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10058866 chrX:10058865 nonsynonymous SNV 0.813 4 20 hm7G_associated_SNPs_19155 0 0 0 0 2 WWC3 chrX:10058940 5'GT 10058940 Upstream 76bp 17943 chr5 64881996 64881996 1 + G T UCEC 64881997 + 64881977 64882017 41 GATCCCAGTTTTTCATAACGGTAGTACCAACGGTAAGTACA GATCCCAGTTTTTCATAACTGTAGTACCAACGGTAAGTACA < 41bp 0.464537971204242 0.763702108217923 NA NA prediction 0.527404216435846 Functional Gain - PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64881997 chr5:64881996 synonymous SNV . 0 20 hm7G_associated_SNPs_19156 0 0 1 0 1 PPWD1 chr5:64882008 5'GT 64882008 Upstream 13bp 17944 chrX 105970559 105970559 1 + G T UCEC 105970560 + 105970540 105970580 41 CATCTGGCTTATGAGAGAGGGGCGTCTGGAGCCGTCATCTT CATCTGGCTTATGAGAGAGTGGCGTCTGGAGCCGTCATCTT < 41bp 0.446052910329689 0.763701696070192 NA NA prediction 0.527403392140383 Functional Gain - RNF128 ENSG00000133135 CDS Human protein_coding chrX:105970560 chrX:105970559 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19157 0 0 0 0 1 RNF128 chrX:105970627 5'GT 105970627 Upstream 69bp 17945 chr8 39550191 39550191 1 + G T SARC 39550192 + 39550172 39550212 41 TGCCACCACAAAATGCAAAGGGAAAGGGGTAAGTCACTTTT TGCCACCACAAAATGCAAATGGAAAGGGGTAAGTCACTTTT < 41bp 0.564769096127491 0.828447358184605 NA NA prediction 0.527356524114228 Functional Gain - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39550192 chr8:39550191 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_19159 0 0 0 2 2 ADAM18 chr8:39550119 3'AG 39550119 Downstream 73bp 17946 chr8 39550191 39550191 1 + G T SARC 39550192 + 39550172 39550212 41 TGCCACCACAAAATGCAAAGGGAAAGGGGTAAGTCACTTTT TGCCACCACAAAATGCAAATGGAAAGGGGTAAGTCACTTTT < 41bp 0.564769096127491 0.828447358184605 NA NA prediction 0.527356524114228 Functional Gain - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39550192 chr8:39550191 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_19159 0 0 0 2 2 ADAM18 chr8:39550199 5'GT 39550199 Upstream 9bp 17947 chrX 138643699 138643699 1 + G T LUAD 138643700 + 138643680 138643720 41 TAGGTGAACATAATATTGAGGAGACAGAACATACAGAGCAA TAGGTGAACATAATATTGATGAGACAGAACATACAGAGCAA < 41bp 0.54043419426499 0.804104983270291 NA NA prediction 0.527341578010603 Functional Gain - F9 ENSG00000101981 CDS Human protein_coding chrX:138643700 chrX:138643699 nonsynonymous SNV 0.106 1 20 hm7G_associated_SNPs_19160 0 0 0 0 1 F9 chrX:138643683 3'AG 138643683 Downstream 17bp 17948 chr12 54910700 54910700 1 + G T LUAD 54910701 + 54910681 54910721 41 GGCCAGTTTCATTGTCAACGGCGGCAATTTCTGCGGATGGC GGCCAGTTTCATTGTCAACTGCGGCAATTTCTGCGGATGGC < 41bp 0.503172947775798 0.766837971106856 NA NA prediction 0.527330046662116 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54910701 chr12:54910700 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_19162 0 0 1 0 1 NCKAP1L chr12:54910680 3'AG 54910680 Downstream 21bp 17949 chr7 129394914 129394914 1 + G T STAD 129394915 + 129394895 129394935 41 GGTGACCAGCCTCGCCCAGGGCAACGGACCAGTGCAGGTGG GGTGACCAGCCTCGCCCAGTGCAACGGACCAGTGCAGGTGG < 41bp 0.581394364363747 0.845046466578423 NA NA prediction 0.527304204429352 Functional Gain - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129394915 chr7:129394914 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19164 0 0 1 0 1 NRF1 chr7:129394858 3'AG 129394858 Downstream 57bp 17950 chr12 52100263 52100263 1 + G T UCEC 52100264 + 52100244 52100284 41 AGATGCCATAGAGGAAGAAGGTGAAGAAGGAGGGGGCTCCC AGATGCCATAGAGGAAGAATGTGAAGAAGGAGGGGGCTCCC < 41bp 0.595020628056021 0.858664528914249 NA NA prediction 0.527287801716456 Functional Gain - SCN8A ENSG00000196876 CDS Human protein_coding chr12:52100264 chr12:52100263 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_19166 0 0 0 0 1 SCN8A chr12:52100206 3'AG 52100206 Downstream 58bp 17951 chr11 13733567 13733567 1 + G T STAD 13733568 + 13733548 13733588 41 TTGTCAACATGAGTCTTGCGGCAGCCTGGTATTCCGGAGTT TTGTCAACATGAGTCTTGCTGCAGCCTGGTATTCCGGAGTT < 41bp 0.586215221400691 0.849835674337938 NA NA prediction 0.527240905874494 Functional Gain - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13733568 chr11:13733567 synonymous SNV . 0 20 hm7G_associated_SNPs_19169 0 0 1 0 2 FAR1 chr11:13733475 3'AG 13733475 Downstream 93bp 17952 chr11 13733567 13733567 1 + G T STAD 13733568 + 13733548 13733588 41 TTGTCAACATGAGTCTTGCGGCAGCCTGGTATTCCGGAGTT TTGTCAACATGAGTCTTGCTGCAGCCTGGTATTCCGGAGTT < 41bp 0.586215221400691 0.849835674337938 NA NA prediction 0.527240905874494 Functional Gain - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13733568 chr11:13733567 synonymous SNV . 0 20 hm7G_associated_SNPs_19169 0 0 1 0 2 FAR1 chr11:13733593 5'GT 13733593 Upstream 27bp 17953 chr19 49259704 49259704 1 + G T STAD 49259705 + 49259685 49259725 41 GGAGGATGGGACGGTGGGGGGCGCTGCTGACCAGAGCCCCG GGAGGATGGGACGGTGGGGTGCGCTGCTGACCAGAGCCCCG < 41bp 0.605655597768933 0.869268937610942 NA NA prediction 0.527226679684017 Functional Gain - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49259705 chr19:49259704 nonsynonymous SNV 0.025 4 20 hm7G_associated_SNPs_19170 0 0 0 0 1 FGF21 chr19:49259728 5'GT 49259728 Upstream 25bp 17954 chr8 36788510 36788510 1 + G T BLCA 36788511 + 36788491 36788531 41 TGGAATTGCTTCAGATGCTGGTGACAGGAGGAGTAAGTTCT TGGAATTGCTTCAGATGCTTGTGACAGGAGGAGTAAGTTCT < 41bp 0.579377073388075 0.842971806561786 NA NA prediction 0.527189466347423 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36788511 chr8:36788510 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19173 0 0 0 0 1 KCNU1 chr8:36788469 3'AG 36788469 Downstream 42bp 17955 chr19 7743422 7743422 1 + G T LUAD 7743423 + 7743403 7743443 41 GAGAGACAGAAGAGAGGCTGGGATTCCGTTCAGCAGAGCAT GAGAGACAGAAGAGAGGCTTGGATTCCGTTCAGCAGAGCAT < 41bp 0.60521914605528 0.868810358090629 NA NA prediction 0.527182424070698 Functional Gain - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human protein_coding chr19:7743423 chr19:7743422 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_19174 0 0 0 0 2 MCEMP1 chr19:7743377 3'AG 7743377 Downstream 46bp 17956 chr19 7743422 7743422 1 + G T LUAD 7743423 + 7743403 7743443 41 GAGAGACAGAAGAGAGGCTGGGATTCCGTTCAGCAGAGCAT GAGAGACAGAAGAGAGGCTTGGATTCCGTTCAGCAGAGCAT < 41bp 0.60521914605528 0.868810358090629 NA NA prediction 0.527182424070698 Functional Gain - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human other chr19:7743423 chr19:7743422 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_19174 0 0 0 0 2 MCEMP1 chr19:7743490 5'GT 7743490 Upstream 69bp 17957 chr7 99964979 99964979 1 + G T LUSC 99964980 + 99964960 99965000 41 CCCCTCCTGCAGGTAGCAGGGCGCCAAGCAGTGACTTCTGA CCCCTCCTGCAGGTAGCAGTGCGCCAAGCAGTGACTTCTGA < 41bp 0.457063830684764 0.763589616496823 NA NA prediction 0.527179232993645 Functional Gain - PILRB ENSG00000121716 CDS Human protein_coding chr7:99964980 chr7:99964979 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_19175 0 0 1 0 1 PILRB chr7:99964972 3'AG 99964972 Downstream 8bp 17958 chr19 37871240 37871240 1 + G T HNSC 37871241 + 37871221 37871261 41 AAGGGAAGGAACCGTGGATGGTGGAGAGAAAGATGTCACAG AAGGGAAGGAACCGTGGATTGTGGAGAGAAAGATGTCACAG < 41bp 0.45249888469824 0.763576719137355 NA NA prediction 0.52715343827471 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37871241 chr19:37871240 nonsynonymous SNV 0.872 0 20 hm7G_associated_SNPs_19176 0 0 1 0 2 ZNF527 chr19:37871179 3'AG 37871179 Downstream 62bp 17959 chr19 37871240 37871240 1 + G T HNSC 37871241 + 37871221 37871261 41 AAGGGAAGGAACCGTGGATGGTGGAGAGAAAGATGTCACAG AAGGGAAGGAACCGTGGATTGTGGAGAGAAAGATGTCACAG < 41bp 0.45249888469824 0.763576719137355 NA NA prediction 0.52715343827471 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37871241 chr19:37871240 nonsynonymous SNV 0.872 0 20 hm7G_associated_SNPs_19176 0 0 1 0 2 ZNF527 chr19:37871274 5'GT 37871274 Upstream 35bp 17960 chr7 76062827 76062827 1 + G T SKCM 76062828 + 76062808 76062848 41 GGTCCCCCACCTTCCACCTGGGAGATGCAGCCCACCTCCAG GGTCCCCCACCTTCCACCTTGGAGATGCAGCCCACCTCCAG < 41bp 0.410783658062209 0.763554874489241 NA NA prediction 0.527109748978483 Functional Gain - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76062828 chr7:76062827 synonymous SNV . 0 20 hm7G_associated_SNPs_19180 0 0 0 0 1 ZP3 chr7:76062787 3'AG 76062787 Downstream 41bp 17961 chr19 50384576 50384576 1 + G T LUAD 50384577 + 50384557 50384597 41 GCCTTCTCAGTGAGTCTGGGGGAGCTAAAGTCCATCCGCCG GCCTTCTCAGTGAGTCTGGTGGAGCTAAAGTCCATCCGCCG < 41bp 0.612415720725892 0.875965082066644 NA NA prediction 0.527098722681504 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50384577 chr19:50384576 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_19181 0 0 1 0 2 TBC1D17 chr19:50384511 3'AG 50384511 Downstream 66bp 17962 chr19 50384576 50384576 1 + G T LUAD 50384577 + 50384557 50384597 41 GCCTTCTCAGTGAGTCTGGGGGAGCTAAAGTCCATCCGCCG GCCTTCTCAGTGAGTCTGGTGGAGCTAAAGTCCATCCGCCG < 41bp 0.612415720725892 0.875965082066644 NA NA prediction 0.527098722681504 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50384577 chr19:50384576 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_19181 0 0 1 0 2 TBC1D17 chr19:50384525 3'AG 50384525 Downstream 52bp 17963 chr5 74652236 74652236 1 + G T UCEC 74652237 + 74652217 74652257 41 TATATCCGTTTCCAGTCCAGGTCAGGGGATGCCATGGGGAT TATATCCGTTTCCAGTCCATGTCAGGGGATGCCATGGGGAT < 41bp 0.579463689740943 0.843011402094945 NA NA prediction 0.527095424708004 Functional Gain - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74652237 chr5:74652236 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_19183 0 0 1 0 2 HMGCR chr5:74652168 3'AG 74652168 Downstream 69bp 17964 chr5 74652236 74652236 1 + G T UCEC 74652237 + 74652217 74652257 41 TATATCCGTTTCCAGTCCAGGTCAGGGGATGCCATGGGGAT TATATCCGTTTCCAGTCCATGTCAGGGGATGCCATGGGGAT < 41bp 0.579463689740943 0.843011402094945 NA NA prediction 0.527095424708004 Functional Gain - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74652237 chr5:74652236 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_19183 0 0 1 0 2 HMGCR chr5:74652273 5'GT 74652273 Upstream 38bp 17965 chrX 128926649 128926649 1 + G T LUAD 128926650 + 128926630 128926670 41 AAGCCACCTGTGGGCACGTGGCTGGGCCTACTCAATGGCAA AAGCCACCTGTGGGCACGTTGCTGGGCCTACTCAATGGCAA < 41bp 0.605144524012833 0.868684551931591 NA NA prediction 0.527080055837516 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926650 chrX:128926649 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19184 0 0 0 0 1 SASH3 chrX:128926603 3'AG 128926603 Downstream 47bp 17966 chr11 60699590 60699590 1 + G T LUAD 60699591 + 60699571 60699611 41 GCGAGTCTGCCAACACACAGGTCCTGCAGGTGAGTGGCAGG GCGAGTCTGCCAACACACATGTCCTGCAGGTGAGTGGCAGG < 41bp 0.433447498176301 0.763538595961644 NA NA prediction 0.527077191923289 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699591 chr11:60699590 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19185 0 0 0 0 1 TMEM132A chr11:60699599 5'GT 60699599 Upstream 10bp 17967 chr4 71840892 71840892 1 + G T HNSC 71840893 + 71840873 71840913 41 TGAGTATCATTGGGCAGATGGAACGAACATAAAGAAACCTA TGAGTATCATTGGGCAGATTGAACGAACATAAAGAAACCTA < 41bp 0.577985646486804 0.841523574898997 NA NA prediction 0.527075856824387 Functional Gain - MOB1B ENSG00000173542 CDS Human protein_coding chr4:71840893 chr4:71840892 stopgain 1.000 1 20 hm7G_associated_SNPs_19186 0 0 1 0 1 MOB1B chr4:71840870 3'AG 71840870 Downstream 23bp 17968 chrX 153171047 153171047 1 + G T UCEC 153171048 + 153171028 153171068 41 GCAGCCAGGAGAGGCCACTGGACACCCGGGACCCGCTGCTA GCAGCCAGGAGAGGCCACTTGACACCCGGGACCCGCTGCTA < 41bp 0.599967064737967 0.863498235533599 NA NA prediction 0.527062341591265 Functional Gain - AVPR2 ENSG00000126895 CDS Human protein_coding chrX:153171048 chrX:153171047 synonymous SNV . 0 20 hm7G_associated_SNPs_19188 0 0 0 0 1 AVPR2 chrX:153170986 3'AG 153170986 Downstream 62bp 17969 chr18 21660889 21660889 1 + G T UCEC 21660890 + 21660870 21660910 41 GCGAAAGTAAGGACATGAAGGCCCCTTTAGCTACGTGAGTA GCGAAAGTAAGGACATGAATGCCCCTTTAGCTACGTGAGTA < 41bp 0.43514922569252 0.763519238236973 NA NA prediction 0.527038476473945 Functional Gain - TTC39C ENSG00000168234 CDS Human protein_coding chr18:21660890 chr18:21660889 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19190 0 0 0 0 1 TTC39C chr18:21660903 5'GT 21660903 Upstream 15bp 17970 chr8 120430299 120430299 1 + G T LUSC 120430300 + 120430280 120430320 41 GCTTCCCCAATATTCTAGCGGTAGAGGGAGATAACTGTGTG GCTTCCCCAATATTCTAGCTGTAGAGGGAGATAACTGTGTG < 41bp 0.564992656554609 0.828476818171414 NA NA prediction 0.52696832323361 Functional Gain - NOV ENSG00000136999 CDS Human protein_coding chr8:120430300 chr8:120430299 synonymous SNV . 0 20 hm7G_associated_SNPs_19192 0 0 0 0 1 NOV chr8:120430298 3'AG 120430298 Downstream 2bp 17971 chr16 1814365 1814365 1 + G T UCEC 1814366 + 1814346 1814386 41 TGAGGACGACGCTGGGAATGGAGTCAAGCCAGCGCCAGGCC TGAGGACGACGCTGGGAATTGAGTCAAGCCAGCGCCAGGCC < 41bp 0.416567397416643 0.763448729314619 NA NA prediction 0.526897458629239 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1814366 chr16:1814365 stopgain 0.023 0 20 hm7G_associated_SNPs_19195 0 0 1 0 2 MAPK8IP3 chr16:1814302 3'AG 1814302 Downstream 64bp 17972 chr16 1814365 1814365 1 + G T UCEC 1814366 + 1814346 1814386 41 TGAGGACGACGCTGGGAATGGAGTCAAGCCAGCGCCAGGCC TGAGGACGACGCTGGGAATTGAGTCAAGCCAGCGCCAGGCC < 41bp 0.416567397416643 0.763448729314619 NA NA prediction 0.526897458629239 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1814366 chr16:1814365 stopgain 0.023 0 20 hm7G_associated_SNPs_19195 0 0 1 0 2 MAPK8IP3 chr16:1814460 5'GT 1814460 Upstream 96bp 17973 chr2 163204169 163204169 1 + G T OV 163204170 + 163204150 163204190 41 CCCAGCTATACTCCTCGATGGATACTCTGGGCCAGCATATT CCCAGCTATACTCCTCGATTGATACTCTGGGCCAGCATATT < 41bp 0.592634120678701 0.8560752732228 NA NA prediction 0.526882305088199 Functional Gain - GCA ENSG00000115271 CDS Human protein_coding chr2:163204170 chr2:163204169 stopgain 0.051 0 20 hm7G_associated_SNPs_19196 0 0 1 0 2 GCA chr2:163204088 3'AG 163204088 Downstream 82bp 17974 chr2 163204169 163204169 1 + G T OV 163204170 + 163204150 163204190 41 CCCAGCTATACTCCTCGATGGATACTCTGGGCCAGCATATT CCCAGCTATACTCCTCGATTGATACTCTGGGCCAGCATATT < 41bp 0.592634120678701 0.8560752732228 NA NA prediction 0.526882305088199 Functional Gain - GCA ENSG00000115271 CDS Human protein_coding chr2:163204170 chr2:163204169 stopgain 0.051 0 20 hm7G_associated_SNPs_19196 0 0 1 0 2 GCA chr2:163204252 5'GT 163204252 Upstream 84bp 17975 chr12 71918195 71918195 1 + G T THCA 71918196 + 71918176 71918216 41 AAACCCACAGACGTCTTGCGGGAAACGCTCTGACATACATT AAACCCACAGACGTCTTGCTGGAAACGCTCTGACATACATT < 41bp 0.441929555148135 0.763436145302257 NA NA prediction 0.526872290604515 Functional Gain - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71918196 chr12:71918195 synonymous SNV . 0 20 hm7G_associated_SNPs_19197 0 0 1 0 2 LGR5 chr12:71918186 3'AG 71918186 Downstream 10bp 17976 chr12 71918195 71918195 1 + G T THCA 71918196 + 71918176 71918216 41 AAACCCACAGACGTCTTGCGGGAAACGCTCTGACATACATT AAACCCACAGACGTCTTGCTGGAAACGCTCTGACATACATT < 41bp 0.441929555148135 0.763436145302257 NA NA prediction 0.526872290604515 Functional Gain - LGR5 ENSG00000139292 CDS Human protein_coding chr12:71918196 chr12:71918195 synonymous SNV . 0 20 hm7G_associated_SNPs_19197 0 0 1 0 2 LGR5 chr12:71918257 5'GT 71918257 Upstream 63bp 17977 chr11 10794180 10794180 1 + G T UCEC 10794181 + 10794161 10794201 41 CAAGAAAAGGAGCTGTTAAGGCAGAAACTTCTTAAAGAACA CAAGAAAAGGAGCTGTTAATGCAGAAACTTCTTAAAGAACA < 41bp 0.445263996783481 0.763433254695988 NA NA prediction 0.526866509391975 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10794181 chr11:10794180 nonsynonymous SNV 0.960 4 20 hm7G_associated_SNPs_19198 0 0 0 0 1 CTR9 chr11:10794202 5'GT 10794202 Upstream 23bp 17978 chr18 29770056 29770056 1 + G T UCEC 29770057 + 29770037 29770077 41 GATTTATGGAATCTGTCTTGGTTTCTGTTCTTGGATGCTCT GATTTATGGAATCTGTCTTTGTTTCTGTTCTTGGATGCTCT < 41bp 0.468832499244127 0.763431666510828 NA NA prediction 0.526863333021656 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29770057 chr18:29770056 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_19200 0 0 0 0 1 MEP1B chr18:29770096 5'GT 29770096 Upstream 41bp 17979 chr16 66977827 66977827 1 + G T HNSC 66977828 + 66977808 66977848 41 GAACCTACAGCCTGCGGTGGGCCGGGCTCTGAAGGCCCACA GAACCTACAGCCTGCGGTGTGCCGGGCTCTGAAGGCCCACA < 41bp 0.594930298399717 0.858359445452788 NA NA prediction 0.526858294106142 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66977828 chr16:66977827 nonsynonymous SNV 0.182 3 20 hm7G_associated_SNPs_19201 0 0 1 0 1 CES2 chr16:66977742 3'AG 66977742 Downstream 86bp 17980 chr5 154172338 154172338 1 + G T LUAD 154172339 + 154172319 154172359 41 AGATGAGGATTGCCAGCGAGGCGGGCAGAAGAAGAAAGGTG AGATGAGGATTGCCAGCGATGCGGGCAGAAGAAGAAAGGTG < 41bp 0.60121195054006 0.864613711932887 NA NA prediction 0.526803522785655 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154172339 chr5:154172338 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_19203 0 0 1 0 1 LARP1 chr5:154172356 5'GT 154172356 Upstream 19bp 17981 chr11 61113369 61113369 1 + G T LIHC 61113370 + 61113350 61113390 41 GGGCAGGAGCTCCAAGCCTGGAAGAGCCCAGGAGCTGATCT GGGCAGGAGCTCCAAGCCTTGAAGAGCCCAGGAGCTGATCT < 41bp 0.609981071456574 0.873355354926121 NA NA prediction 0.526748566939095 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61113370 chr11:61113369 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19204 0 0 1 0 2 TKFC chr11:61113329 3'AG 61113329 Downstream 41bp 17982 chr11 61113369 61113369 1 + G T LIHC 61113370 + 61113350 61113390 41 GGGCAGGAGCTCCAAGCCTGGAAGAGCCCAGGAGCTGATCT GGGCAGGAGCTCCAAGCCTTGAAGAGCCCAGGAGCTGATCT < 41bp 0.609981071456574 0.873355354926121 NA NA prediction 0.526748566939095 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61113370 chr11:61113369 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19204 0 0 1 0 2 TKFC chr11:61113418 5'GT 61113418 Upstream 50bp 17983 chr16 50338338 50338338 1 + G T LUSC 50338339 + 50338319 50338359 41 GACGCGGCCCTGAAGATGCGGGCGTCAGTGCGCATGACCCG GACGCGGCCCTGAAGATGCTGGCGTCAGTGCGCATGACCCG < 41bp 0.4150434488439 0.763372245747584 NA NA prediction 0.526744491495168 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50338339 chr16:50338338 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_19205 0 0 1 0 1 ADCY7 chr16:50338271 3'AG 50338271 Downstream 68bp 17984 chrX 53455504 53455504 1 + G T UCEC 53455505 + 53455485 53455525 41 CGGCTGAGAATGCAGCAGGGGCAGTTCAGGTACAACTTGGA CGGCTGAGAATGCAGCAGGTGCAGTTCAGGTACAACTTGGA < 41bp 0.443616528430753 0.763365679949843 NA NA prediction 0.526731359899685 Functional Gain - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53455505 chrX:53455504 nonsynonymous SNV 0.615 1 20 hm7G_associated_SNPs_19206 0 0 0 0 1 RIBC1 chrX:53455575 5'GT 53455575 Upstream 72bp 17985 chr5 64077801 64077801 1 + G T UCEC 64077802 + 64077782 64077822 41 GCCTGGTTTCATAGTCCAAGGCGGAGATCCTACTGGCACAG GCCTGGTTTCATAGTCCAATGCGGAGATCCTACTGGCACAG < 41bp 0.429280343793379 0.763364115031443 NA NA prediction 0.526728230062886 Functional Gain - CWC27 ENSG00000153015 CDS Human protein_coding chr5:64077802 chr5:64077801 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_19207 0 0 1 0 2 CWC27 chr5:64077748 3'AG 64077748 Downstream 54bp 17986 chr5 64077801 64077801 1 + G T UCEC 64077802 + 64077782 64077822 41 GCCTGGTTTCATAGTCCAAGGCGGAGATCCTACTGGCACAG GCCTGGTTTCATAGTCCAATGCGGAGATCCTACTGGCACAG < 41bp 0.429280343793379 0.763364115031443 NA NA prediction 0.526728230062886 Functional Gain - CWC27 ENSG00000153015 CDS Human protein_coding chr5:64077802 chr5:64077801 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_19207 0 0 1 0 2 CWC27 chr5:64077860 5'GT 64077860 Upstream 60bp 17987 chr3 113344957 113344957 1 + G T UCEC 113344958 + 113344938 113344978 41 CCTTCCTCCAGGGAACTCCGGCCGAATCCCGGGAGAAGAAC CCTTCCTCCAGGGAACTCCTGCCGAATCCCGGGAGAAGAAC < 41bp 0.608055003739214 0.871403700315319 NA NA prediction 0.52669739315221 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113344958 chr3:113344957 synonymous SNV . 0 20 hm7G_associated_SNPs_19209 0 0 0 0 1 SIDT1 chr3:113344949 3'AG 113344949 Downstream 9bp 17988 chr1 242048760 242048760 1 + G T LUAD 242048761 + 242048741 242048781 41 TAATGCCGAGAACAAGCCGGGGTTACAGATCAAACTCAATG TAATGCCGAGAACAAGCCGTGGTTACAGATCAAACTCAATG < 41bp 0.589277063944476 0.852623352028379 NA NA prediction 0.526692576167805 Functional Gain - EXO1 ENSG00000174371 CDS Human protein_coding chr1:242048761 chr1:242048760 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_19210 0 0 1 0 1 EXO1 chr1:242048809 5'GT 242048809 Upstream 50bp 17989 chr7 129348982 129348982 1 + G T LUAD 129348983 + 129348963 129349003 41 CGGGGAAAACCAGGCTGGGGGAAAGAAAGCTGCAAGCCCAT CGGGGAAAACCAGGCTGGGTGAAAGAAAGCTGCAAGCCCAT < 41bp 0.605671889330476 0.868998330830296 NA NA prediction 0.526652882999641 Functional Gain - NRF1 ENSG00000106459 CDS Human protein_coding chr7:129348983 chr7:129348982 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19211 0 0 0 0 1 NRF1 chr7:129348915 3'AG 129348915 Downstream 68bp 17990 chr12 51442900 51442900 1 + G T LUAD 51442901 + 51442881 51442921 41 AAGACAAAAGCGATTAATGGGAAATACCATCGTTTCTTGGG AAGACAAAAGCGATTAATGTGAAATACCATCGTTTCTTGGG < 41bp 0.437374788784125 0.76332164153612 NA NA prediction 0.526643283072241 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51442901 chr12:51442900 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_19213 0 0 1 0 2 LETMD1 chr12:51442817 3'AG 51442817 Downstream 84bp 17991 chr12 51442900 51442900 1 + G T LUAD 51442901 + 51442881 51442921 41 AAGACAAAAGCGATTAATGGGAAATACCATCGTTTCTTGGG AAGACAAAAGCGATTAATGTGAAATACCATCGTTTCTTGGG < 41bp 0.437374788784125 0.76332164153612 NA NA prediction 0.526643283072241 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51442901 chr12:51442900 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_19213 0 0 1 0 2 LETMD1 chr12:51442968 5'GT 51442968 Upstream 69bp 17992 chr19 17886888 17886888 1 + G T HNSC 17886889 + 17886869 17886909 41 ATCAAGCCTGCCCCGGCCCGGGCTCCAGCCTGCAGCCCCGA ATCAAGCCTGCCCCGGCCCTGGCTCCAGCCTGCAGCCCCGA < 41bp 0.41772609625306 0.763321558599106 NA NA prediction 0.526643117198213 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17886889 chr19:17886888 nonsynonymous SNV 0.083 1 20 hm7G_associated_SNPs_19214 0 0 0 0 1 FCHO1 chr19:17886970 5'GT 17886970 Upstream 83bp 17993 chr11 17663399 17663399 1 + G T SARC 17663400 + 17663380 17663420 41 GCCCTGGCCTGTAGAACCAGGAGTACGAGCACCCGCGGGAC GCCCTGGCCTGTAGAACCATGAGTACGAGCACCCGCGGGAC < 41bp 0.438109323522995 0.763302377032915 NA NA prediction 0.526604754065831 Functional Gain - OTOG ENSG00000188162 CDS Human protein_coding chr11:17663400 chr11:17663399 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_19218 0 0 0 0 2 OTOG chr11:17663394 3'AG 17663394 Downstream 6bp 17994 chr11 17663399 17663399 1 + G T SARC 17663400 + 17663380 17663420 41 GCCCTGGCCTGTAGAACCAGGAGTACGAGCACCCGCGGGAC GCCCTGGCCTGTAGAACCATGAGTACGAGCACCCGCGGGAC < 41bp 0.438109323522995 0.763302377032915 NA NA prediction 0.526604754065831 Functional Gain - OTOG ENSG00000188162 CDS Human protein_coding chr11:17663400 chr11:17663399 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_19218 0 0 0 0 2 OTOG chr11:17663498 5'GT 17663498 Upstream 100bp 17995 chr7 128850945 128850945 1 + G T STAD 128850946 + 128850926 128850966 41 GCACACTGTGTCCCACGACGGGCCCGTGGGTGAGCCTCACC GCACACTGTGTCCCACGACTGGCCCGTGGGTGAGCCTCACC < 41bp 0.607634211426251 0.870867797786411 NA NA prediction 0.52646717272032 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128850946 chr7:128850945 nonsynonymous SNV 0.423 4 20 hm7G_associated_SNPs_19224 0 0 1 0 1 SMO chr7:128850954 5'GT 128850954 Upstream 10bp 17996 chr18 77513702 77513702 1 + G T COAD 77513703 + 77513683 77513723 41 GCCGCCAGCGAGTCCAGCAGGGAGTCCAGCAACGAGGATGA GCCGCCAGCGAGTCCAGCATGGAGTCCAGCAACGAGGATGA < 41bp 0.585105778067101 0.84833154054741 NA NA prediction 0.526451524960619 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77513703 chr18:77513702 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_19227 0 0 0 4 1 CTDP1 chr18:77513652 3'AG 77513652 Downstream 51bp 17997 chr1 156351673 156351673 1 + G T OV 156351674 + 156351654 156351694 41 ATGATGCTGACACCCTTTGGGGCTCTGGCAGCTGGCTTCTT ATGATGCTGACACCCTTTGTGGCTCTGGCAGCTGGCTTCTT < 41bp 0.610137630285288 0.873359519198115 NA NA prediction 0.526443777825655 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156351674 chr1:156351673 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_19228 0 0 1 1 3 RHBG chr1:156351597 3'AG 156351597 Downstream 77bp 17998 chr1 156351673 156351673 1 + G T OV 156351674 + 156351654 156351694 41 ATGATGCTGACACCCTTTGGGGCTCTGGCAGCTGGCTTCTT ATGATGCTGACACCCTTTGTGGCTCTGGCAGCTGGCTTCTT < 41bp 0.610137630285288 0.873359519198115 NA NA prediction 0.526443777825655 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156351674 chr1:156351673 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_19228 0 0 1 1 3 RHBG chr1:156351718 5'GT 156351718 Upstream 46bp 17999 chr1 156351673 156351673 1 + G T OV 156351674 + 156351654 156351694 41 ATGATGCTGACACCCTTTGGGGCTCTGGCAGCTGGCTTCTT ATGATGCTGACACCCTTTGTGGCTCTGGCAGCTGGCTTCTT < 41bp 0.610137630285288 0.873359519198115 NA NA prediction 0.526443777825655 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156351674 chr1:156351673 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_19228 0 0 1 1 3 RHBG chr1:156351734 5'GT 156351734 Upstream 62bp 18000 chr9 125042771 125042771 1 + G T rs149296425 125042772 + 125042752 125042792 41 TGAATATTAATGCTGCCTTGGTTGAGGATATAATCAACTTG TGAATATTAATGCTGCCTTTGTTGAGGATATAATCAACTTG < 41bp 0.443555012161512 0.763210751925002 NA NA prediction 0.526421503850004 Functional Gain - MRRF ENSG00000148187 CDS Human protein_coding chr9:125042772 chr9:125042771 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_19229 0 0 1 1 1 MRRF chr9:125042722 3'AG 125042722 Downstream 50bp 18001 chr7 50444294 50444294 1 + G T PAAD 50444295 + 50444275 50444315 41 CGTGCCTGTGAAATGAATGGGGAAGAATGTGCGGAGGATTT CGTGCCTGTGAAATGAATGTGGAAGAATGTGCGGAGGATTT < 41bp 0.474123684106773 0.76320599670932 NA NA prediction 0.526411993418639 Functional Gain - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50444295 chr7:50444294 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19231 0 0 1 0 1 IKZF1 chr7:50444231 3'AG 50444231 Downstream 64bp 18002 chr17 74076354 74076354 1 + G T KIRP 74076355 + 74076335 74076375 41 GGCTCTGGGTGGACTGGAGGGACCAGAGCCCCCAGGCTCGA GGCTCTGGGTGGACTGGAGTGACCAGAGCCCCCAGGCTCGA < 41bp 0.431143316820998 0.763187073550814 NA NA prediction 0.526374147101628 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74076355 chr17:74076354 nonsynonymous SNV 0.974 0 20 hm7G_associated_SNPs_19232 0 0 0 0 1 ZACN chr17:74076336 3'AG 74076336 Downstream 19bp 18003 chr11 33358645 33358645 1 + G T LUAD 33358646 + 33358626 33358666 41 ATACATTTCTCAGACTCAAGGTTTGCCAGGAGAACAGTTGT ATACATTTCTCAGACTCAATGTTTGCCAGGAGAACAGTTGT < 41bp 0.455782270026556 0.763167605296873 NA NA prediction 0.526335210593745 Functional Gain - HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358646 chr11:33358645 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19233 0 0 1 1 2 HIPK3 chr11:33358621 3'AG 33358621 Downstream 25bp 18004 chr11 33358645 33358645 1 + G T LUAD 33358646 + 33358626 33358666 41 ATACATTTCTCAGACTCAAGGTTTGCCAGGAGAACAGTTGT ATACATTTCTCAGACTCAATGTTTGCCAGGAGAACAGTTGT < 41bp 0.455782270026556 0.763167605296873 NA NA prediction 0.526335210593745 Functional Gain - HIPK3 ENSG00000110422 CDS Human protein_coding chr11:33358646 chr11:33358645 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19233 0 0 1 1 2 HIPK3 chr11:33358740 5'GT 33358740 Upstream 96bp 18005 chr17 34313634 34313634 1 + G T UCEC 34313635 + 34313615 34313655 41 GATTCAGTCTTGGTCCCTAGGGCGATGGTGATGAGGAGGAA GATTCAGTCTTGGTCCCTATGGCGATGGTGATGAGGAGGAA < 41bp 0.580318294190368 0.843479808159191 NA NA prediction 0.526323027937645 Functional Gain - CCL14 ENSG00000213494;ENSG00000266956 CDS Human other chr17:34313635 chr17:34313634 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_19235 0 0 0 0 1 CCL15-CCL14 chr17:34313570 3'AG 34313570 Downstream 65bp 18006 chr17 30528001 30528001 1 + G T THCA 30528002 + 30527982 30528022 41 ACTTATTTAGATGTACAGCGGTGCCTGGAATATTTGGGCTA ACTTATTTAGATGTACAGCTGTGCCTGGAATATTTGGGCTA < 41bp 0.458999768080309 0.76316082734746 NA NA prediction 0.526321654694919 Functional Gain - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30528002 chr17:30528001 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_19236 0 0 1 2 2 RHOT1 chr17:30527975 3'AG 30527975 Downstream 27bp 18007 chr17 30528001 30528001 1 + G T THCA 30528002 + 30527982 30528022 41 ACTTATTTAGATGTACAGCGGTGCCTGGAATATTTGGGCTA ACTTATTTAGATGTACAGCTGTGCCTGGAATATTTGGGCTA < 41bp 0.458999768080309 0.76316082734746 NA NA prediction 0.526321654694919 Functional Gain - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30528002 chr17:30528001 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_19236 0 0 1 2 2 RHOT1 chr17:30528075 5'GT 30528075 Upstream 75bp 18008 chr6 144167271 144167271 1 + G T UCEC 144167272 + 144167252 144167292 41 ACTACCTGCAGCACCTGAAGGAACCATCTGGGCCTTCAGAG ACTACCTGCAGCACCTGAATGAACCATCTGGGCCTTCAGAG < 41bp 0.582400419834202 0.845558462084833 NA NA prediction 0.526316084501262 Functional Gain - LTV1 ENSG00000135521 CDS Human protein_coding chr6:144167272 chr6:144167271 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19237 0 0 1 0 2 LTV1 chr6:144167188 3'AG 144167188 Downstream 84bp 18009 chr6 144167271 144167271 1 + G T UCEC 144167272 + 144167252 144167292 41 ACTACCTGCAGCACCTGAAGGAACCATCTGGGCCTTCAGAG ACTACCTGCAGCACCTGAATGAACCATCTGGGCCTTCAGAG < 41bp 0.582400419834202 0.845558462084833 NA NA prediction 0.526316084501262 Functional Gain - LTV1 ENSG00000135521 CDS Human protein_coding chr6:144167272 chr6:144167271 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19237 0 0 1 0 2 LTV1 chr6:144167361 5'GT 144167361 Upstream 91bp 18010 chr7 37936676 37936676 1 + G T CESC 37936677 + 37936657 37936697 41 TTGTTAATAGACTCTTTGAGGATCCTGAGGAAAACTAAAGT TTGTTAATAGACTCTTTGATGATCCTGAGGAAAACTAAAGT < 41bp 0.473888696143392 0.763152041398086 NA NA prediction 0.526304082796173 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37936677 chr7:37936676 nonsynonymous SNV 0.030 0 20 hm7G_associated_SNPs_19239 0 0 0 0 1 NME8 chr7:37936709 5'GT 37936709 Upstream 34bp 18011 chr7 108213393 108213393 1 + G T COAD 108213394 + 108213374 108213414 41 AAAAGAGTATGATACACTTGGACACAGTGCTTTTACTAGTG AAAAGAGTATGATACACTTTGACACAGTGCTTTTACTAGTG < 41bp 0.472121694950213 0.763120049326126 NA NA prediction 0.526240098652253 Functional Gain - DNAJB9 ENSG00000128590 CDS Human protein_coding chr7:108213394 chr7:108213393 stopgain 1.000 1 20 hm7G_associated_SNPs_19242 0 0 1 0 1 DNAJB9 chr7:108213343 3'AG 108213343 Downstream 51bp 18012 chr13 24892987 24892987 1 + G T STAD 24892988 + 24892968 24893008 41 GTCCTGGCAGCCCGGGGAAGGATGGGACGAGTGGAGAGAAG GTCCTGGCAGCCCGGGGAATGATGGGACGAGTGGAGAGAAG < 41bp 0.595949128408691 0.859064638439487 NA NA prediction 0.526231020061591 Functional Gain - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24892988 chr13:24892987 nonsynonymous SNV 0.288 1 20 hm7G_associated_SNPs_19243 0 0 0 0 2 C1QTNF9 chr13:24892956 3'AG 24892956 Downstream 32bp 18013 chr13 24892987 24892987 1 + G T STAD 24892988 + 24892968 24893008 41 GTCCTGGCAGCCCGGGGAAGGATGGGACGAGTGGAGAGAAG GTCCTGGCAGCCCGGGGAATGATGGGACGAGTGGAGAGAAG < 41bp 0.595949128408691 0.859064638439487 NA NA prediction 0.526231020061591 Functional Gain - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24892988 chr13:24892987 nonsynonymous SNV 0.288 1 20 hm7G_associated_SNPs_19243 0 0 0 0 2 C1QTNF9 chr13:24893018 5'GT 24893018 Upstream 32bp 18014 chr11 64368272 64368272 1 + G T LUSC 64368273 + 64368253 64368293 41 ATCCTGGGGCCTCTGGTCCGGCTGCTGGGTGTCCATGGCCC ATCCTGGGGCCTCTGGTCCTGCTGCTGGGTGTCCATGGCCC < 41bp 0.602776169769589 0.865880391626549 NA NA prediction 0.52620844371392 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64368273 chr11:64368272 nonsynonymous SNV 0.968 0 20 hm7G_associated_SNPs_19245 0 0 0 0 1 SLC22A12 chr11:64368207 3'AG 64368207 Downstream 66bp 18015 chr4 129121797 129121797 1 + G T STAD 129121798 + 129121778 129121818 41 AATTTAGACAACTTGCTTGGGAAGATGCAAAAGAAAATTAC AATTTAGACAACTTGCTTGTGAAGATGCAAAAGAAAATTAC < 41bp 0.553126332901456 0.816210549870535 NA NA prediction 0.526168433938157 Functional Gain - LARP1B ENSG00000138709 CDS Human protein_coding chr4:129121798 chr4:129121797 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19248 0 0 1 3 1 LARP1B chr4:129121820 5'GT 129121820 Upstream 24bp 18016 chr2 176958368 176958368 1 + G T LUAD 176958369 + 176958349 176958389 41 GCACCAAGGACCAGCCACAGGGGTCCCACTTTTGGAAATCT GCACCAAGGACCAGCCACATGGGTCCCACTTTTGGAAATCT < 41bp 0.441581377646867 0.763067875488602 NA NA prediction 0.526135750977204 Functional Gain - HOXD13 ENSG00000128714 CDS Human protein_coding chr2:176958369 chr2:176958368 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19250 0 0 1 0 1 HOXD13 chr2:176958399 5'GT 176958399 Upstream 32bp 18017 chr7 142836648 142836648 1 + G T LUAD 142836649 + 142836629 142836669 41 CCGTCGTTGATGTTATTCGGGAATTAGGCATCTGCCCTGAT CCGTCGTTGATGTTATTCGTGAATTAGGCATCTGCCCTGAT < 41bp 0.568982919937666 0.832032393120137 NA NA prediction 0.526098946364943 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142836649 chr7:142836648 synonymous SNV . 0 20 hm7G_associated_SNPs_19252 0 0 0 0 1 PIP chr7:142836611 3'AG 142836611 Downstream 38bp 18018 chr5 43649320 43649320 1 + G T LUAD 43649321 + 43649301 43649341 41 TCAGATGGTGACCACTTTTGGCTTGGCTGGCATTGTGGGGT TCAGATGGTGACCACTTTTTGCTTGGCTGGCATTGTGGGGT < 41bp 0.607925349400433 0.870939100363048 NA NA prediction 0.526027501925231 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43649321 chr5:43649320 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19254 0 0 1 0 2 NNT chr5:43649249 3'AG 43649249 Downstream 72bp 18019 chr5 43649320 43649320 1 + G T LUAD 43649321 + 43649301 43649341 41 TCAGATGGTGACCACTTTTGGCTTGGCTGGCATTGTGGGGT TCAGATGGTGACCACTTTTTGCTTGGCTGGCATTGTGGGGT < 41bp 0.607925349400433 0.870939100363048 NA NA prediction 0.526027501925231 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43649321 chr5:43649320 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19254 0 0 1 0 2 NNT chr5:43649410 5'GT 43649410 Upstream 91bp 18020 chr5 40958281 40958281 1 + G T LUAD 40958282 + 40958262 40958302 41 GTGGTTTGGCTACTGTTGAGGGGACCCATTGTCTGTGCCAT GTGGTTTGGCTACTGTTGATGGGACCCATTGTCTGTGCCAT < 41bp 0.432313530131928 0.763010679503728 NA NA prediction 0.526021359007457 Functional Gain - C7 ENSG00000112936 CDS Human protein_coding chr5:40958282 chr5:40958281 nonsynonymous SNV 0.698 0 20 hm7G_associated_SNPs_19257 0 0 0 3 1 C7 chr5:40958363 5'GT 40958363 Upstream 83bp 18021 chr10 102241669 102241669 1 + G T UCEC 102241670 + 102241650 102241690 41 TCCCTCTGCACTTTTCCAGGGGGACAAGGCTGGCTGTGGGG TCCCTCTGCACTTTTCCAGTGGGACAAGGCTGGCTGTGGGG < 41bp 0.606302174094763 0.869311297443389 NA NA prediction 0.526018246697253 Functional Gain - WNT8B ENSG00000075290 CDS Human protein_coding chr10:102241670 chr10:102241669 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_19258 0 0 0 0 1 WNT8B chr10:102241669 3'AG 102241669 Downstream 1bp 18022 chr7 20438509 20438509 1 + G T LUAD 20438510 + 20438490 20438530 41 TTTCAGAAGTGAAAGTTCAGGTGGAAAACCAGGTACAAGGC TTTCAGAAGTGAAAGTTCATGTGGAAAACCAGGTACAAGGC < 41bp 0.45874034424757 0.763001733417757 NA NA prediction 0.526003466835514 Functional Gain - ITGB8 ENSG00000105855 CDS Human protein_coding chr7:20438510 chr7:20438509 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_19259 0 0 0 0 1 ITGB8 chr7:20438483 3'AG 20438483 Downstream 27bp 18023 chr21 22664504 22664504 1 + G T UCEC 22664505 + 22664485 22664525 41 AGGTATATACAGATGTGAAGGAAGAGTGGAGGCCAGGGGAG AGGTATATACAGATGTGAATGAAGAGTGGAGGCCAGGGGAG < 41bp 0.572157861753893 0.835143943497251 NA NA prediction 0.525972163486715 Functional Gain - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22664505 chr21:22664504 stopgain 1.000 1 20 hm7G_associated_SNPs_19260 0 0 1 0 2 NCAM2 chr21:22664424 3'AG 22664424 Downstream 81bp 18024 chr21 22664504 22664504 1 + G T UCEC 22664505 + 22664485 22664525 41 AGGTATATACAGATGTGAAGGAAGAGTGGAGGCCAGGGGAG AGGTATATACAGATGTGAATGAAGAGTGGAGGCCAGGGGAG < 41bp 0.572157861753893 0.835143943497251 NA NA prediction 0.525972163486715 Functional Gain - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22664505 chr21:22664504 stopgain 1.000 1 20 hm7G_associated_SNPs_19260 0 0 1 0 2 NCAM2 chr21:22664561 5'GT 22664561 Upstream 58bp 18025 chr18 641484 641484 1 + G T LUSC 641485 + 641465 641505 41 TGAGAGGGCAATTTGGCTGGGTGTCTGAACTGGCAAACCAG TGAGAGGGCAATTTGGCTGTGTGTCTGAACTGGCAAACCAG < 41bp 0.583585533484093 0.846567961779266 NA NA prediction 0.525964856590347 Functional Gain - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:641485 chr18:641484 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_19261 0 0 0 0 1 CLUL1 chr18:641541 5'GT 641541 Upstream 58bp 18026 chr1 227071492 227071492 1 + G T UCEC 227071493 + 227071473 227071513 41 GGCGGCCGCCAGGCCTGGAGGAAGAGCTGACCCTCAAATAC GGCGGCCGCCAGGCCTGGATGAAGAGCTGACCCTCAAATAC < 41bp 0.420955799978726 0.762971073345083 NA NA prediction 0.525942146690166 Functional Gain - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227071493 chr1:227071492 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_19262 0 0 0 0 1 PSEN2 chr1:227071406 3'AG 227071406 Downstream 87bp 18027 chrX 3021870 3021870 1 + G T DLBC 3021871 + 3021851 3021891 41 TTGTCCGATGGCCTGGAAAGGTACCAGCTGGACGGTTGATT TTGTCCGATGGCCTGGAAATGTACCAGCTGGACGGTTGATT < 41bp 0.438635270095229 0.76295943659965 NA NA prediction 0.5259188731993 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:3021871 chrX:3021870 nonsynonymous SNV 0.020 1 20 hm7G_associated_SNPs_19263 0 0 0 0 2 ARSF chrX:3021803 3'AG 3021803 Downstream 68bp 18028 chrX 3021870 3021870 1 + G T DLBC 3021871 + 3021851 3021891 41 TTGTCCGATGGCCTGGAAAGGTACCAGCTGGACGGTTGATT TTGTCCGATGGCCTGGAAATGTACCAGCTGGACGGTTGATT < 41bp 0.438635270095229 0.76295943659965 NA NA prediction 0.5259188731993 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:3021871 chrX:3021870 nonsynonymous SNV 0.020 1 20 hm7G_associated_SNPs_19263 0 0 0 0 2 ARSF chrX:3021965 5'GT 3021965 Upstream 96bp 18029 chr2 66739342 66739342 1 + G T COAD 66739343 + 66739323 66739363 41 ACGATGATGACCCTGATAAGGACAAAAAGCGTCACAAAAAG ACGATGATGACCCTGATAATGACAAAAAGCGTCACAAAAAG < 41bp 0.44789990101449 0.762949236592434 NA NA prediction 0.525898473184868 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66739343 chr2:66739342 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19265 0 0 0 0 2 MEIS1 chr2:66739281 3'AG 66739281 Downstream 62bp 18030 chr2 66739342 66739342 1 + G T COAD 66739343 + 66739323 66739363 41 ACGATGATGACCCTGATAAGGACAAAAAGCGTCACAAAAAG ACGATGATGACCCTGATAATGACAAAAAGCGTCACAAAAAG < 41bp 0.44789990101449 0.762949236592434 NA NA prediction 0.525898473184868 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66739343 chr2:66739342 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19265 0 0 0 0 2 MEIS1 chr2:66739426 5'GT 66739426 Upstream 85bp 18031 chrX 48923039 48923039 1 + G T LUAD 48923040 + 48923020 48923060 41 CCCTCACCACCCAAGGCTTGGGACCAGCTGCGGGCAGTATC CCCTCACCACCCAAGGCTTTGGACCAGCTGCGGGCAGTATC < 41bp 0.618286168151508 0.881226547270511 NA NA prediction 0.525880758238007 Functional Gain - CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48923040 chrX:48923039 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_19267 0 0 0 0 1 CCDC120 chrX:48922985 3'AG 48922985 Downstream 55bp 18032 chr16 70190383 70190383 1 + G T LUSC 70190384 + 70190364 70190404 41 CCTTTCTTTCTTAGGGCATGGATTTCATTGGTCGCGACGCC CCTTTCTTTCTTAGGGCATTGATTTCATTGGTCGCGACGCC < 41bp 0.442388981025356 0.762912859508025 NA NA prediction 0.52582571901605 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70190384 chr16:70190383 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_19268 0 0 0 0 1 PDPR chr16:70190378 3'AG 70190378 Downstream 6bp 18033 chr3 45559536 45559536 1 + G T PRAD 45559537 + 45559517 45559557 41 GCTGAGGCCAGGAAGCTCTGGGAGTACAAGAACTCCGTCAT GCTGAGGCCAGGAAGCTCTTGGAGTACAAGAACTCCGTCAT < 41bp 0.43077426955136 0.762908411710567 NA NA prediction 0.525816823421134 Functional Gain - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45559537 chr3:45559536 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_19269 0 0 1 0 1 LARS2 chr3:45559564 5'GT 45559564 Upstream 29bp 18034 chr9 33364709 33364709 1 + G T CESC 33364710 + 33364690 33364730 41 TGATTTCTCATTTCAGGAAGGACTTAAAGTTTGTCAGTGAC TGATTTCTCATTTCAGGAATGACTTAAAGTTTGTCAGTGAC < 41bp 0.584115739945034 0.847009686202207 NA NA prediction 0.525787892514345 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33364710 chr9:33364709 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19270 0 0 1 0 2 NFX1 chr9:33364706 3'AG 33364706 Downstream 4bp 18035 chr9 33364709 33364709 1 + G T CESC 33364710 + 33364690 33364730 41 TGATTTCTCATTTCAGGAAGGACTTAAAGTTTGTCAGTGAC TGATTTCTCATTTCAGGAATGACTTAAAGTTTGTCAGTGAC < 41bp 0.584115739945034 0.847009686202207 NA NA prediction 0.525787892514345 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33364710 chr9:33364709 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19270 0 0 1 0 2 NFX1 chr9:33364772 5'GT 33364772 Upstream 64bp 18036 chr13 102250553 102250553 1 + G T LUSC 102250554 + 102250534 102250574 41 CTGCAAAGCAGGCTGGTATGGGAAGAAGTGTGAGCACCCAC CTGCAAAGCAGGCTGGTATTGGAAGAAGTGTGAGCACCCAC < 41bp 0.606228611653635 0.869121755002092 NA NA prediction 0.525786286696915 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102250554 chr13:102250553 nonsynonymous SNV 0.981 5 20 hm7G_associated_SNPs_19271 0 0 0 0 2 ITGBL1 chr13:102250503 3'AG 102250503 Downstream 51bp 18037 chr13 102250553 102250553 1 + G T LUSC 102250554 + 102250534 102250574 41 CTGCAAAGCAGGCTGGTATGGGAAGAAGTGTGAGCACCCAC CTGCAAAGCAGGCTGGTATTGGAAGAAGTGTGAGCACCCAC < 41bp 0.606228611653635 0.869121755002092 NA NA prediction 0.525786286696915 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102250554 chr13:102250553 nonsynonymous SNV 0.981 5 20 hm7G_associated_SNPs_19271 0 0 0 0 2 ITGBL1 chr13:102250649 5'GT 102250649 Upstream 97bp 18038 chr5 137708464 137708464 1 + G T LUSC 137708465 + 137708445 137708485 41 TGGAAGGGTCTCTTGTATGGGCGCCCCGTGAGGACCCAGTC TGGAAGGGTCTCTTGTATGTGCGCCCCGTGAGGACCCAGTC < 41bp 0.418482303391432 0.762889858692642 NA NA prediction 0.525779717385283 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137708465 chr5:137708464 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_19272 0 0 1 0 1 KDM3B chr5:137708530 5'GT 137708530 Upstream 67bp 18039 chr18 32455326 32455326 1 + G T UCEC 32455327 + 32455307 32455347 41 GCCGCAGGACTCCCTCACAGGAGTAGGGGGAGATGTACAAG GCCGCAGGACTCCCTCACATGAGTAGGGGGAGATGTACAAG < 41bp 0.484696775005567 0.762886710299535 NA NA prediction 0.525773420599069 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32455327 chr18:32455326 stopgain 0.974 1 20 hm7G_associated_SNPs_19274 0 0 0 0 1 DTNA chr18:32455362 5'GT 32455362 Upstream 37bp 18040 chr1 21805879 21805879 1 + G T rs72874208 21805880 + 21805860 21805900 41 TGAAAAAGGAGGACCAAGAGGCCACAAGTCCCAGGTGAGTC TGAAAAAGGAGGACCAAGATGCCACAAGTCCCAGGTGAGTC < 41bp 0.441252298210795 0.762877987375766 NA NA prediction 0.525755974751531 Functional Gain - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21805880 chr1:21805879 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_19277 0 0 0 0 2 NBPF3 chr1:21805842 3'AG 21805842 Downstream 38bp 18041 chr1 21805879 21805879 1 + G T rs72874208 21805880 + 21805860 21805900 41 TGAAAAAGGAGGACCAAGAGGCCACAAGTCCCAGGTGAGTC TGAAAAAGGAGGACCAAGATGCCACAAGTCCCAGGTGAGTC < 41bp 0.441252298210795 0.762877987375766 NA NA prediction 0.525755974751531 Functional Gain - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21805880 chr1:21805879 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_19277 0 0 0 0 2 NBPF3 chr1:21805893 5'GT 21805893 Upstream 15bp 18042 chr5 75979011 75979011 1 + G T BLCA 75979012 + 75978992 75979032 41 GTGAATTGCTGGGGTCGCTGGGAGAGGTGCCAACCGTGGAA GTGAATTGCTGGGGTCGCTTGGAGAGGTGCCAACCGTGGAA < 41bp 0.431764748011988 0.762856614324654 NA NA prediction 0.525713228649307 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75979012 chr5:75979011 synonymous SNV . 0 20 hm7G_associated_SNPs_19280 0 0 1 0 2 IQGAP2 chr5:75978940 3'AG 75978940 Downstream 72bp 18043 chr5 75979011 75979011 1 + G T BLCA 75979012 + 75978992 75979032 41 GTGAATTGCTGGGGTCGCTGGGAGAGGTGCCAACCGTGGAA GTGAATTGCTGGGGTCGCTTGGAGAGGTGCCAACCGTGGAA < 41bp 0.431764748011988 0.762856614324654 NA NA prediction 0.525713228649307 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75979012 chr5:75979011 synonymous SNV . 0 20 hm7G_associated_SNPs_19280 0 0 1 0 2 IQGAP2 chr5:75979042 5'GT 75979042 Upstream 32bp 18044 chr6 89859047 89859047 1 + G T LUSC 89859048 + 89859028 89859068 41 AATTGATTTAATTGAAGCAGGGGCTTTTACAAATCTTGATG AATTGATTTAATTGAAGCATGGGCTTTTACAAATCTTGATG < 41bp 0.441651554869214 0.762844897823038 NA NA prediction 0.525689795646076 Functional Gain - PM20D2 ENSG00000146281 CDS Human protein_coding chr6:89859048 chr6:89859047 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19283 0 0 1 0 2 PM20D2 chr6:89858984 3'AG 89858984 Downstream 64bp 18045 chr6 89859047 89859047 1 + G T LUSC 89859048 + 89859028 89859068 41 AATTGATTTAATTGAAGCAGGGGCTTTTACAAATCTTGATG AATTGATTTAATTGAAGCATGGGCTTTTACAAATCTTGATG < 41bp 0.441651554869214 0.762844897823038 NA NA prediction 0.525689795646076 Functional Gain - PM20D2 ENSG00000146281 CDS Human protein_coding chr6:89859048 chr6:89859047 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19283 0 0 1 0 2 PM20D2 chr6:89859132 5'GT 89859132 Upstream 86bp 18046 chr4 39098377 39098377 1 + G T LUAD 39098378 + 39098358 39098398 41 AATGTCAGAAACTCATTATGGAAGCAATGAAGTACCATTTA AATGTCAGAAACTCATTATTGAAGCAATGAAGTACCATTTA < 41bp 0.456052238657565 0.76283156533573 NA NA prediction 0.525663130671461 Functional Gain - KLHL5 ENSG00000109790 CDS Human protein_coding chr4:39098378 chr4:39098377 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19284 0 0 1 0 1 KLHL5 chr4:39098312 3'AG 39098312 Downstream 66bp 18047 chr2 70037735 70037735 1 + G T STAD 70037736 + 70037716 70037756 41 CTCTTGCTAGAATATGGACGGAGCCTTGAAGATGACATTCG CTCTTGCTAGAATATGGACTGAGCCTTGAAGATGACATTCG < 41bp 0.585761216495926 0.84857210447609 NA NA prediction 0.525621775960326 Functional Gain - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70037736 chr2:70037735 nonsynonymous SNV 0.968 2 20 hm7G_associated_SNPs_19285 0 0 1 0 2 ANXA4 chr2:70037726 3'AG 70037726 Downstream 10bp 18048 chr2 70037735 70037735 1 + G T STAD 70037736 + 70037716 70037756 41 CTCTTGCTAGAATATGGACGGAGCCTTGAAGATGACATTCG CTCTTGCTAGAATATGGACTGAGCCTTGAAGATGACATTCG < 41bp 0.585761216495926 0.84857210447609 NA NA prediction 0.525621775960326 Functional Gain - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70037736 chr2:70037735 nonsynonymous SNV 0.968 2 20 hm7G_associated_SNPs_19285 0 0 1 0 2 ANXA4 chr2:70037805 5'GT 70037805 Upstream 71bp 18049 chr11 32124922 32124922 1 + G T LUSC 32124923 + 32124903 32124943 41 CCGGGATCTGAACAAGGACGGGAAGTTAGACAAAGATGAGA CCGGGATCTGAACAAGGACTGGAAGTTAGACAAAGATGAGA < 41bp 0.59979045177061 0.862599099799169 NA NA prediction 0.525617296057117 Functional Gain - RCN1 ENSG00000049449 CDS Human protein_coding chr11:32124923 chr11:32124922 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_19286 0 0 0 0 1 RCN1 chr11:32124827 3'AG 32124827 Downstream 96bp 18050 chr14 97322892 97322892 1 + G T rs139476915 97322893 + 97322873 97322913 41 AAAATATTGCAAGTTTGATGGACAAATGTTTTCCTGAGAAA AAAATATTGCAAGTTTGATTGACAAATGTTTTCCTGAGAAA < 41bp 0.460038290813348 0.76280098331574 NA NA prediction 0.52560196663148 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97322893 chr14:97322892 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_19287 3 0 1 0 2 VRK1 chr14:97322865 3'AG 97322865 Downstream 28bp 18051 chr14 97322892 97322892 1 + G T rs139476915 97322893 + 97322873 97322913 41 AAAATATTGCAAGTTTGATGGACAAATGTTTTCCTGAGAAA AAAATATTGCAAGTTTGATTGACAAATGTTTTCCTGAGAAA < 41bp 0.460038290813348 0.76280098331574 NA NA prediction 0.52560196663148 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97322893 chr14:97322892 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_19287 3 0 1 0 2 VRK1 chr14:97322923 5'GT 97322923 Upstream 32bp 18052 chr3 160786629 160786629 1 + G T COAD 160786630 + 160786610 160786650 41 AGTTTCAATGGCTCCTGGAGGGTCCAGGGAATCCTGGCCAT AGTTTCAATGGCTCCTGGATGGTCCAGGGAATCCTGGCCAT < 41bp 0.545469789017153 0.808212319836499 NA NA prediction 0.525485061638692 Functional Gain - PPM1L ENSG00000163590 CDS Human protein_coding chr3:160786630 chr3:160786629 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_19291 0 0 0 0 1 PPM1L chr3:160786599 3'AG 160786599 Downstream 31bp 18053 chr19 49963104 49963104 1 + G T ESCA 49963105 + 49963085 49963125 41 TGGCAGGCTGGGAGCCCATGGGTGAGACCCTGGAGTCCCTA TGGCAGGCTGGGAGCCCATTGGTGAGACCCTGGAGTCCCTA < 41bp 0.413155575186073 0.76272612398577 NA NA prediction 0.525452247971539 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49963105 chr19:49963104 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_19292 0 0 1 0 1 ALDH16A1 chr19:49963105 5'GT 49963105 Upstream 2bp 18054 chr16 31429674 31429674 1 + G T GBM 31429675 + 31429655 31429695 41 AAGGCCACCCTGGGAGACAGGATGCTTATGAGGGCCAGTGC AAGGCCACCCTGGGAGACATGATGCTTATGAGGGCCAGTGC < 41bp 0.603752672667358 0.86645696926995 NA NA prediction 0.525408593205185 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31429675 chr16:31429674 nonsynonymous SNV 0.816 3 20 hm7G_associated_SNPs_19293 0 0 0 0 2 ITGAD chr16:31429622 3'AG 31429622 Downstream 53bp 18055 chr16 31429674 31429674 1 + G T GBM 31429675 + 31429655 31429695 41 AAGGCCACCCTGGGAGACAGGATGCTTATGAGGGCCAGTGC AAGGCCACCCTGGGAGACATGATGCTTATGAGGGCCAGTGC < 41bp 0.603752672667358 0.86645696926995 NA NA prediction 0.525408593205185 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31429675 chr16:31429674 nonsynonymous SNV 0.816 3 20 hm7G_associated_SNPs_19293 0 0 0 0 2 ITGAD chr16:31429701 5'GT 31429701 Upstream 28bp 18056 chr10 115334082 115334082 1 + G T UCEC 115334083 + 115334063 115334103 41 AGTATGATTACAGCTACGAGGATTATAATCAGGAAGAGAAC AGTATGATTACAGCTACGATGATTATAATCAGGAAGAGAAC < 41bp 0.440579432153425 0.762689153242254 NA NA prediction 0.525378306484508 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115334083 chr10:115334082 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_19295 0 0 0 0 2 HABP2 chr10:115334048 3'AG 115334048 Downstream 35bp 18057 chr10 115334082 115334082 1 + G T UCEC 115334083 + 115334063 115334103 41 AGTATGATTACAGCTACGAGGATTATAATCAGGAAGAGAAC AGTATGATTACAGCTACGATGATTATAATCAGGAAGAGAAC < 41bp 0.440579432153425 0.762689153242254 NA NA prediction 0.525378306484508 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115334083 chr10:115334082 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_19295 0 0 0 0 2 HABP2 chr10:115334164 5'GT 115334164 Upstream 83bp 18058 chr2 234678193 234678193 1 + G T UCEC 234678194 + 234678174 234678214 41 TAGAAAGAAGCAGCAGTCAGGAAGACAGATGTGAAGAGCTG TAGAAAGAAGCAGCAGTCATGAAGACAGATGTGAAGAGCTG < 41bp 0.529605827875329 0.79228533086607 NA NA prediction 0.525359005981483 Functional Gain - UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 ENSG00000167165;ENSG00000241635;ENSG00000242515;ENSG00000244474 CDS Human other chr2:234678194 chr2:234678193 stopgain 0.014 0 20 hm7G_associated_SNPs_19297 0 0 0 0 1 UGT1A1;UGT1A10;UGT1A3;UGT1A4;UGT1A5;UGT1A6;UGT1A7;UGT1A8;UGT1A9 chr2:234678177 3'AG 234678177 Downstream 17bp 18059 chr17 34923523 34923523 1 + G T UCEC 34923524 + 34923504 34923544 41 GTTGTTGGATGGATGTATGGGAACTAATGTCGCAGGAATGC GTTGTTGGATGGATGTATGTGAACTAATGTCGCAGGAATGC < 41bp 0.588868804406672 0.851533320018807 NA NA prediction 0.525329031224269 Functional Gain - GGNBP2 ENSG00000005955 CDS Human other chr17:34923524 chr17:34923523 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19299 0 0 1 0 2 GGNBP2 chr17:34923502 3'AG 34923502 Downstream 22bp 18060 chr17 34923523 34923523 1 + G T UCEC 34923524 + 34923504 34923544 41 GTTGTTGGATGGATGTATGGGAACTAATGTCGCAGGAATGC GTTGTTGGATGGATGTATGTGAACTAATGTCGCAGGAATGC < 41bp 0.588868804406672 0.851533320018807 NA NA prediction 0.525329031224269 Functional Gain - GGNBP2 ENSG00000005955 CDS Human other chr17:34923524 chr17:34923523 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19299 0 0 1 0 2 GGNBP2 chr17:34923615 5'GT 34923615 Upstream 93bp 18061 chr11 102196242 102196242 1 + G T UCEC 102196243 + 102196223 102196263 41 TGCTGTGATGGTGGACTCAGGTGTTGGGAATCTGGAGATGA TGCTGTGATGGTGGACTCATGTGTTGGGAATCTGGAGATGA < 41bp 0.574227651684661 0.836883525140141 NA NA prediction 0.525311746910958 Functional Gain - BIRC3 ENSG00000023445 CDS Human protein_coding chr11:102196243 chr11:102196242 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_19300 0 0 0 0 2 BIRC3 chr11:102196197 3'AG 102196197 Downstream 46bp 18062 chr11 102196242 102196242 1 + G T UCEC 102196243 + 102196223 102196263 41 TGCTGTGATGGTGGACTCAGGTGTTGGGAATCTGGAGATGA TGCTGTGATGGTGGACTCATGTGTTGGGAATCTGGAGATGA < 41bp 0.574227651684661 0.836883525140141 NA NA prediction 0.525311746910958 Functional Gain - BIRC3 ENSG00000023445 CDS Human protein_coding chr11:102196243 chr11:102196242 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_19300 0 0 0 0 2 BIRC3 chr11:102196296 5'GT 102196296 Upstream 55bp 18063 chr12 118828942 118828942 1 + G T SARC 118828943 + 118828923 118828963 41 TTGCTCAGACTGAACAAGTGGAACGAAATTACATTAAAGAA TTGCTCAGACTGAACAAGTTGAACGAAATTACATTAAAGAA < 41bp 0.584585082557223 0.847235315086021 NA NA prediction 0.525300465057597 Functional Gain - SUDS3 ENSG00000111707 CDS Human protein_coding chr12:118828943 chr12:118828942 synonymous SNV . 0 20 hm7G_associated_SNPs_19302 0 0 1 0 1 SUDS3 chr12:118828931 3'AG 118828931 Downstream 12bp 18064 chr18 48446834 48446834 1 + G T LIHC 48446835 + 48446815 48446855 41 GCTGTTTTTAGATATGGCCGGAACACACTCATTCAGTTCGA GCTGTTTTTAGATATGGCCTGAACACACTCATTCAGTTCGA < 41bp 0.58341158372065 0.846041391371015 NA NA prediction 0.525259615300729 Functional Gain - ME2 ENSG00000082212 CDS Human protein_coding chr18:48446835 chr18:48446834 nonsynonymous SNV 0.946 1 20 hm7G_associated_SNPs_19304 0 0 1 0 1 ME2 chr18:48446826 3'AG 48446826 Downstream 9bp 18065 chr20 33586130 33586130 1 + G T UCEC 33586131 + 33586111 33586151 41 AGCTGTGCCGGACCTATGAGGATCAGCTAAGCGAGGCCAAG AGCTGTGCCGGACCTATGATGATCAGCTAAGCGAGGCCAAG < 41bp 0.429409995338611 0.762611254917386 NA NA prediction 0.525222509834772 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33586131 chr20:33586130 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19307 0 0 0 0 2 MYH7B chr20:33586098 3'AG 33586098 Downstream 33bp 18066 chr20 33586130 33586130 1 + G T UCEC 33586131 + 33586111 33586151 41 AGCTGTGCCGGACCTATGAGGATCAGCTAAGCGAGGCCAAG AGCTGTGCCGGACCTATGATGATCAGCTAAGCGAGGCCAAG < 41bp 0.429409995338611 0.762611254917386 NA NA prediction 0.525222509834772 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33586131 chr20:33586130 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19307 0 0 0 0 2 MYH7B chr20:33586224 5'GT 33586224 Upstream 95bp 18067 chr19 36037613 36037613 1 + G T UCEC 36037614 + 36037594 36037634 41 GGATGTGGCAGACCTGATAGGTCTAAACCTTGTCATGTCCC GGATGTGGCAGACCTGATATGTCTAAACCTTGTCATGTCCC < 41bp 0.434631110006359 0.762602842182485 NA NA prediction 0.525205684364969 Functional Gain - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36037614 chr19:36037613 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19309 0 0 1 0 2 TMEM147 chr19:36037574 3'AG 36037574 Downstream 40bp 18068 chr19 36037613 36037613 1 + G T UCEC 36037614 + 36037594 36037634 41 GGATGTGGCAGACCTGATAGGTCTAAACCTTGTCATGTCCC GGATGTGGCAGACCTGATATGTCTAAACCTTGTCATGTCCC < 41bp 0.434631110006359 0.762602842182485 NA NA prediction 0.525205684364969 Functional Gain - TMEM147 ENSG00000105677 CDS Human protein_coding chr19:36037614 chr19:36037613 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19309 0 0 1 0 2 TMEM147 chr19:36037710 5'GT 36037710 Upstream 98bp 18069 chr1 11574456 11574456 1 + G T LUSC 11574457 + 11574437 11574477 41 CTTCCCCCAGCAAAGTCCAGGTTCTCTATGGGGGGACAGAC CTTCCCCCAGCAAAGTCCATGTTCTCTATGGGGGGACAGAC < 41bp 0.425427375051409 0.762601741855219 NA NA prediction 0.525203483710438 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11574457 chr1:11574456 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_19310 0 0 0 0 1 DISP3 chr1:11574447 3'AG 11574447 Downstream 10bp 18070 chr5 40962263 40962263 1 + G T UCEC 40962264 + 40962244 40962284 41 ACCTCCTGCCTTGAAAGATGGATTTGTTCAAGTTGGTTATG ACCTCCTGCCTTGAAAGATTGATTTGTTCAAGTTGGTTATG < 41bp 0.453332350691504 0.762585736558204 NA NA prediction 0.525171473116409 Functional Gain - C7 ENSG00000112936 CDS Human protein_coding chr5:40962264 chr5:40962263 stopgain 1.000 1 20 hm7G_associated_SNPs_19312 0 0 0 1 2 C7 chr5:40962187 3'AG 40962187 Downstream 77bp 18071 chr5 40962263 40962263 1 + G T UCEC 40962264 + 40962244 40962284 41 ACCTCCTGCCTTGAAAGATGGATTTGTTCAAGTTGGTTATG ACCTCCTGCCTTGAAAGATTGATTTGTTCAAGTTGGTTATG < 41bp 0.453332350691504 0.762585736558204 NA NA prediction 0.525171473116409 Functional Gain - C7 ENSG00000112936 CDS Human protein_coding chr5:40962264 chr5:40962263 stopgain 1.000 1 20 hm7G_associated_SNPs_19312 0 0 0 1 2 C7 chr5:40962274 5'GT 40962274 Upstream 12bp 18072 chr1 48695065 48695065 1 + G T SARC 48695066 + 48695046 48695086 41 ATCTGAAGAAGCGATTTGGGGGCCAGAGGATCCAGGTGTAC ATCTGAAGAAGCGATTTGGTGGCCAGAGGATCCAGGTGTAC < 41bp 0.556871650152191 0.819451101515731 NA NA prediction 0.525158902727081 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48695066 chr1:48695065 synonymous SNV . 0 20 hm7G_associated_SNPs_19313 0 0 1 0 2 SLC5A9 chr1:48694967 3'AG 48694967 Downstream 99bp 18073 chr1 48695065 48695065 1 + G T SARC 48695066 + 48695046 48695086 41 ATCTGAAGAAGCGATTTGGGGGCCAGAGGATCCAGGTGTAC ATCTGAAGAAGCGATTTGGTGGCCAGAGGATCCAGGTGTAC < 41bp 0.556871650152191 0.819451101515731 NA NA prediction 0.525158902727081 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48695066 chr1:48695065 synonymous SNV . 0 20 hm7G_associated_SNPs_19313 0 0 1 0 2 SLC5A9 chr1:48695131 5'GT 48695131 Upstream 67bp 18074 chr3 130311915 130311915 1 + G T LUAD 130311916 + 130311896 130311936 41 TCTTTTCAGGGAGAAGTTGGGGAAAATGGAATTGACGGATT TCTTTTCAGGGAGAAGTTGTGGAAAATGGAATTGACGGATT < 41bp 0.578348429564792 0.840926113543123 NA NA prediction 0.525155367956662 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130311916 chr3:130311915 nonsynonymous SNV 0.520 4 20 hm7G_associated_SNPs_19314 0 0 0 0 2 COL6A6 chr3:130311905 3'AG 130311905 Downstream 11bp 18075 chr3 130311915 130311915 1 + G T LUAD 130311916 + 130311896 130311936 41 TCTTTTCAGGGAGAAGTTGGGGAAAATGGAATTGACGGATT TCTTTTCAGGGAGAAGTTGTGGAAAATGGAATTGACGGATT < 41bp 0.578348429564792 0.840926113543123 NA NA prediction 0.525155367956662 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130311916 chr3:130311915 nonsynonymous SNV 0.520 4 20 hm7G_associated_SNPs_19314 0 0 0 0 2 COL6A6 chr3:130311949 5'GT 130311949 Upstream 35bp 18076 chr5 176022596 176022596 1 + G T SKCM 176022597 + 176022577 176022617 41 CCTGAGCGTGGTCCTGTTAGGACGGCAGGCAGGCGCAAGTG CCTGAGCGTGGTCCTGTTATGACGGCAGGCAGGCGCAAGTG < 41bp 0.586030772004672 0.848603447902297 NA NA prediction 0.52514535179525 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176022597 chr5:176022596 stopgain 0.001 0 20 hm7G_associated_SNPs_19315 0 0 1 0 1 CDHR2 chr5:176022533 3'AG 176022533 Downstream 64bp 18077 chr19 44564659 44564659 1 + G T LUAD 44564660 + 44564640 44564680 41 CTTCACTGAGGAGGAGCTGGGGCTGCTGGACCTTGCCCAGA CTTCACTGAGGAGGAGCTGTGGCTGCTGGACCTTGCCCAGA < 41bp 0.599973441322502 0.862544457487638 NA NA prediction 0.525142032330272 Functional Gain - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564660 chr19:44564659 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_19316 0 0 1 0 2 ZNF223 chr19:44564608 3'AG 44564608 Downstream 52bp 18078 chr19 44564659 44564659 1 + G T LUAD 44564660 + 44564640 44564680 41 CTTCACTGAGGAGGAGCTGGGGCTGCTGGACCTTGCCCAGA CTTCACTGAGGAGGAGCTGTGGCTGCTGGACCTTGCCCAGA < 41bp 0.599973441322502 0.862544457487638 NA NA prediction 0.525142032330272 Functional Gain - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564660 chr19:44564659 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_19316 0 0 1 0 2 ZNF223 chr19:44564734 5'GT 44564734 Upstream 76bp 18079 chr15 20488826 20488826 1 + G T LUAD 20488827 + 20488807 20488847 41 GTGGAACCCCCACCTGCTTGGCTCCTGAAGTTCTTGTTTCT GTGGAACCCCCACCTGCTTTGCTCCTGAAGTTCTTGTTTCT < 41bp 0.465405741923272 0.762563128016732 NA NA prediction 0.525126256033464 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20488827 chr15:20488826 . . 0 20 hm7G_associated_SNPs_19317 0 0 0 0 2 CHEK2P2 chr15:20488749 3'AG 20488749 Downstream 78bp 18080 chr15 20488826 20488826 1 + G T LUAD 20488827 + 20488807 20488847 41 GTGGAACCCCCACCTGCTTGGCTCCTGAAGTTCTTGTTTCT GTGGAACCCCCACCTGCTTTGCTCCTGAAGTTCTTGTTTCT < 41bp 0.465405741923272 0.762563128016732 NA NA prediction 0.525126256033464 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20488827 chr15:20488826 . . 0 20 hm7G_associated_SNPs_19317 0 0 0 0 2 CHEK2P2 chr15:20488912 5'GT 20488912 Upstream 87bp 18081 chr1 15953208 15953208 1 + G T STAD 15953209 + 15953189 15953229 41 CAGACAACCACAGATCATTGGCTTCTTATGGCTTGAAAGAT CAGACAACCACAGATCATTTGCTTCTTATGGCTTGAAAGAT < 41bp 0.607350305188535 0.869912025757696 NA NA prediction 0.525123441138322 Functional Gain - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15953209 chr1:15953208 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_19318 0 0 1 0 2 DDI2 chr1:15953164 3'AG 15953164 Downstream 45bp 18082 chr1 15953208 15953208 1 + G T STAD 15953209 + 15953189 15953229 41 CAGACAACCACAGATCATTGGCTTCTTATGGCTTGAAAGAT CAGACAACCACAGATCATTTGCTTCTTATGGCTTGAAAGAT < 41bp 0.607350305188535 0.869912025757696 NA NA prediction 0.525123441138322 Functional Gain - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15953209 chr1:15953208 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_19318 0 0 1 0 2 DDI2 chr1:15953293 5'GT 15953293 Upstream 86bp 18083 chrX 122616715 122616715 1 + G T LUAD 122616716 + 122616696 122616736 41 ATATACTTGTCGGAGGTCTGGGGCTGGCCATGATGGTGGCT ATATACTTGTCGGAGGTCTTGGGCTGGCCATGATGGTGGCT < 41bp 0.439771800465332 0.762559398150073 NA NA prediction 0.525118796300145 Functional Gain - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122616716 chrX:122616715 synonymous SNV . 0 20 hm7G_associated_SNPs_19321 0 0 0 0 1 GRIA3 chrX:122616650 3'AG 122616650 Downstream 66bp 18084 chr1 905734 905734 1 + G T LUSC 905735 + 905715 905755 41 TCAAGAAGGGGCGGCGGAGGGTGCCTGTGAGGAACCTGGGA TCAAGAAGGGGCGGCGGAGTGTGCCTGTGAGGAACCTGGGA < 41bp 0.601042686971433 0.863587409252805 NA NA prediction 0.525089444562744 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:905735 chr1:905734 nonsynonymous SNV 0.919 0 20 hm7G_associated_SNPs_19322 0 0 1 0 2 PLEKHN1 chr1:905657 3'AG 905657 Downstream 78bp 18085 chr1 905734 905734 1 + G T LUSC 905735 + 905715 905755 41 TCAAGAAGGGGCGGCGGAGGGTGCCTGTGAGGAACCTGGGA TCAAGAAGGGGCGGCGGAGTGTGCCTGTGAGGAACCTGGGA < 41bp 0.601042686971433 0.863587409252805 NA NA prediction 0.525089444562744 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:905735 chr1:905734 nonsynonymous SNV 0.919 0 20 hm7G_associated_SNPs_19322 0 0 1 0 2 PLEKHN1 chr1:905803 5'GT 905803 Upstream 70bp 18086 chr19 38090600 38090600 1 + G T LGG 38090601 + 38090581 38090621 41 TGCCTGGACACTACCCAGAGGAAATTGTACAGAGATGTGAT TGCCTGGACACTACCCAGATGAAATTGTACAGAGATGTGAT < 41bp 0.595362215882745 0.857904650691695 NA NA prediction 0.525084869617899 Functional Gain - ZNF540 ENSG00000171817 CDS Human protein_coding chr19:38090601 chr19:38090600 nonsynonymous SNV 0.751 2 20 hm7G_associated_SNPs_19323 0 0 0 0 2 ZNF540 chr19:38090527 3'AG 38090527 Downstream 74bp 18087 chr19 38090600 38090600 1 + G T LGG 38090601 + 38090581 38090621 41 TGCCTGGACACTACCCAGAGGAAATTGTACAGAGATGTGAT TGCCTGGACACTACCCAGATGAAATTGTACAGAGATGTGAT < 41bp 0.595362215882745 0.857904650691695 NA NA prediction 0.525084869617899 Functional Gain - ZNF540 ENSG00000171817 CDS Human protein_coding chr19:38090601 chr19:38090600 nonsynonymous SNV 0.751 2 20 hm7G_associated_SNPs_19323 0 0 0 0 2 ZNF540 chr19:38090653 5'GT 38090653 Upstream 54bp 18088 chr15 68119376 68119376 1 + G T LUAD 68119377 + 68119357 68119397 41 CGGCTTCCCTACGGCCTTCGGCCTATGCCCCAAAAAGGACG CGGCTTCCCTACGGCCTTCTGCCTATGCCCCAAAAAGGACG < 41bp 0.61107196914591 0.873602927878166 NA NA prediction 0.525061917464513 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68119377 chr15:68119376 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_19324 0 0 0 0 1 SKOR1 chr15:68119430 5'GT 68119430 Upstream 55bp 18089 chr6 50683294 50683294 1 + G T LUAD 50683295 + 50683275 50683315 41 CCTGCCAGGGCCCAGCCTGGGGCTGGCCGCCGCGGGAGCAG CCTGCCAGGGCCCAGCCTGTGGCTGGCCGCCGCGGGAGCAG < 41bp 0.604567409117785 0.867087454705749 NA NA prediction 0.525040091175928 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50683295 chr6:50683294 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19327 0 0 0 0 1 TFAP2D chr6:50683326 5'GT 50683326 Upstream 33bp 18090 chr2 95541340 95541340 1 + G T THCA 95541341 + 95541321 95541361 41 TCCTGTCTGCAGACACTGCGGGAAATCACAGATCAGGAACA TCCTGTCTGCAGACACTGCTGGAAATCACAGATCAGGAACA < 41bp 0.591713328346974 0.854217363592321 NA NA prediction 0.525008070490694 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95541341 chr2:95541340 nonsynonymous SNV 0.118 0 20 hm7G_associated_SNPs_19328 0 0 0 0 1 TEKT4 chr2:95541333 3'AG 95541333 Downstream 8bp 18091 chr8 69046421 69046421 1 + G T LUAD 69046422 + 69046402 69046442 41 ACAGCAAGGAAAATGAGATGGAAACTTGGGAAGCCAGCAGG ACAGCAAGGAAAATGAGATTGAAACTTGGGAAGCCAGCAGG < 41bp 0.434472872830023 0.762502780496944 NA NA prediction 0.525005560993888 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69046422 chr8:69046421 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_19329 0 0 0 0 1 PREX2 chr8:69046511 5'GT 69046511 Upstream 91bp 18092 chr10 81065309 81065309 1 + G T LUAD 81065310 + 81065290 81065330 41 TAAAACCGCTCTGCTGGAGGGCCTGGAGGTGGATCAGTACA TAAAACCGCTCTGCTGGAGTGCCTGGAGGTGGATCAGTACA < 41bp 0.426971376271366 0.7625014751357 NA NA prediction 0.525002950271401 Functional Gain - ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:81065310 chr10:81065309 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19330 0 0 1 0 2 ZMIZ1 chr10:81065290 3'AG 81065290 Downstream 20bp 18093 chr10 81065309 81065309 1 + G T LUAD 81065310 + 81065290 81065330 41 TAAAACCGCTCTGCTGGAGGGCCTGGAGGTGGATCAGTACA TAAAACCGCTCTGCTGGAGTGCCTGGAGGTGGATCAGTACA < 41bp 0.426971376271366 0.7625014751357 NA NA prediction 0.525002950271401 Functional Gain - ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:81065310 chr10:81065309 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19330 0 0 1 0 2 ZMIZ1 chr10:81065358 5'GT 81065358 Upstream 50bp 18094 chr19 33597774 33597774 1 + G T LUAD 33597775 + 33597755 33597795 41 AACTGAATGCCTCCAAACGGGCTGAGTTGCTTGGAGAGACG AACTGAATGCCTCCAAACGTGCTGAGTTGCTTGGAGAGACG < 41bp 0.612339984769096 0.874835790842841 NA NA prediction 0.52499161214749 Functional Gain - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33597775 chr19:33597774 synonymous SNV . 0 20 hm7G_associated_SNPs_19331 0 0 1 0 1 GPATCH1 chr19:33597805 5'GT 33597805 Upstream 32bp 18095 chr7 45750138 45750138 1 + G T PRAD 45750139 + 45750119 45750159 41 TTTTCTAGGCATCAATGTTGGCCCTGTGGTGGCTGGAGTGA TTTTCTAGGCATCAATGTTTGCCCTGTGGTGGCTGGAGTGA < 41bp 0.430043017336632 0.762493918768302 NA NA prediction 0.524987837536603 Functional Gain - ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45750139 chr7:45750138 nonsynonymous SNV 0.644 5 20 hm7G_associated_SNPs_19332 0 0 0 0 1 ADCY1 chr7:45750127 3'AG 45750127 Downstream 12bp 18096 chr1 111778693 111778693 1 + G T LUAD 111778694 + 111778674 111778714 41 TTTGACTTCCATGGGTCTTGGGAAAAGCCCCTTATCACTGG TTTGACTTCCATGGGTCTTTGGAAAAGCCCCTTATCACTGG < 41bp 0.603096708383498 0.86558213343062 NA NA prediction 0.524970850094243 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111778694 chr1:111778693 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_19335 0 0 0 0 2 CHI3L2 chr1:111778646 3'AG 111778646 Downstream 48bp 18097 chr1 111778693 111778693 1 + G T LUAD 111778694 + 111778674 111778714 41 TTTGACTTCCATGGGTCTTGGGAAAAGCCCCTTATCACTGG TTTGACTTCCATGGGTCTTTGGAAAAGCCCCTTATCACTGG < 41bp 0.603096708383498 0.86558213343062 NA NA prediction 0.524970850094243 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111778694 chr1:111778693 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_19335 0 0 0 0 2 CHI3L2 chr1:111778775 5'GT 111778775 Upstream 83bp 18098 chr14 104638965 104638965 1 + G T LUSC 104638966 + 104638946 104638986 41 TCCAGTCGGTGGTCAGTGGGGCTGATGGCTGCATTTTTTCC TCCAGTCGGTGGTCAGTGGTGCTGATGGCTGCATTTTTTCC < 41bp 0.429179518549758 0.762475835781256 NA NA prediction 0.524951671562512 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638966 chr14:104638965 synonymous SNV . 0 20 hm7G_associated_SNPs_19336 0 0 1 0 2 KIF26A chr14:104638912 3'AG 104638912 Downstream 54bp 18099 chr14 104638965 104638965 1 + G T LUSC 104638966 + 104638946 104638986 41 TCCAGTCGGTGGTCAGTGGGGCTGATGGCTGCATTTTTTCC TCCAGTCGGTGGTCAGTGGTGCTGATGGCTGCATTTTTTCC < 41bp 0.429179518549758 0.762475835781256 NA NA prediction 0.524951671562512 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638966 chr14:104638965 synonymous SNV . 0 20 hm7G_associated_SNPs_19336 0 0 1 0 2 KIF26A chr14:104639005 5'GT 104639005 Upstream 41bp 18100 chr12 93968550 93968550 1 + G T LUAD 93968551 + 93968531 93968571 41 CCAAAGAGAAATTAAAAGAGGCACCAGAAGGAACTTTCTTG CCAAAGAGAAATTAAAAGATGCACCAGAAGGAACTTTCTTG < 41bp 0.527974629856531 0.79044260990977 NA NA prediction 0.524935960106478 Functional Gain - SOCS2 ENSG00000120833 CDS Human protein_coding chr12:93968551 chr12:93968550 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19338 0 0 0 0 1 SOCS2 chr12:93968498 3'AG 93968498 Downstream 53bp 18101 chr4 146650335 146650335 1 + G T PRAD 146650336 + 146650316 146650356 41 TATAGGCACATCAAATTTGGGATTTTGGTGATTGTTTTCCG TATAGGCACATCAAATTTGTGATTTTGGTGATTGTTTTCCG < 41bp 0.56905644445966 0.831494168375711 NA NA prediction 0.524875447832101 Functional Gain - C4orf51 ENSG00000237136 CDS Human protein_coding chr4:146650336 chr4:146650335 nonsynonymous SNV 0.502 2 20 hm7G_associated_SNPs_19342 0 0 0 0 2 C4orf51 chr4:146650321 3'AG 146650321 Downstream 15bp 18102 chr4 146650335 146650335 1 + G T PRAD 146650336 + 146650316 146650356 41 TATAGGCACATCAAATTTGGGATTTTGGTGATTGTTTTCCG TATAGGCACATCAAATTTGTGATTTTGGTGATTGTTTTCCG < 41bp 0.56905644445966 0.831494168375711 NA NA prediction 0.524875447832101 Functional Gain - C4orf51 ENSG00000237136 CDS Human protein_coding chr4:146650336 chr4:146650335 nonsynonymous SNV 0.502 2 20 hm7G_associated_SNPs_19342 0 0 0 0 2 C4orf51 chr4:146650381 5'GT 146650381 Upstream 47bp 18103 chr19 58115697 58115697 1 + G T LUAD 58115698 + 58115678 58115718 41 TACTTCTCCCAGGAGGAGTGGGAGCTCCTTGATGAGATGCA TACTTCTCCCAGGAGGAGTTGGAGCTCCTTGATGAGATGCA < 41bp 0.603578302360422 0.866006638894113 NA NA prediction 0.524856673067382 Functional Gain - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58115698 chr19:58115697 nonsynonymous SNV 0.041 3 20 hm7G_associated_SNPs_19343 0 0 0 0 2 ZNF530 chr19:58115645 3'AG 58115645 Downstream 53bp 18104 chr19 58115697 58115697 1 + G T LUAD 58115698 + 58115678 58115718 41 TACTTCTCCCAGGAGGAGTGGGAGCTCCTTGATGAGATGCA TACTTCTCCCAGGAGGAGTTGGAGCTCCTTGATGAGATGCA < 41bp 0.603578302360422 0.866006638894113 NA NA prediction 0.524856673067382 Functional Gain - ZNF530 ENSG00000183647 CDS Human protein_coding chr19:58115698 chr19:58115697 nonsynonymous SNV 0.041 3 20 hm7G_associated_SNPs_19343 0 0 0 0 2 ZNF530 chr19:58115774 5'GT 58115774 Upstream 78bp 18105 chr1 113058958 113058958 1 + G T PRAD 113058959 + 113058939 113058979 41 ACGGTGTCCGTTTTGCCAAGGCCTTCGTGGATGCCAAGGAG ACGGTGTCCGTTTTGCCAATGCCTTCGTGGATGCCAAGGAG < 41bp 0.606977777537044 0.869333074834543 NA NA prediction 0.524710594594997 Functional Gain - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113058959 chr1:113058958 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19347 0 0 0 0 1 WNT2B chr1:113059039 5'GT 113059039 Upstream 82bp 18106 chr20 29847348 29847348 1 + G T LUAD 29847349 + 29847329 29847369 41 GGAAGAAAGAAAAATGTGGGGAAAAACATATTTGCTGTGTC GGAAGAAAGAAAAATGTGGTGAAAAACATATTTGCTGTGTC < 41bp 0.466515188242075 0.762352109872989 NA NA prediction 0.524704219745978 Functional Gain - DEFB115 ENSG00000215547 CDS Human protein_coding chr20:29847349 chr20:29847348 synonymous SNV . 0 20 hm7G_associated_SNPs_19348 0 0 0 0 1 DEFB115 chr20:29847263 3'AG 29847263 Downstream 86bp 18107 chr14 75295965 75295965 1 + G T TGCT 75295966 + 75295946 75295986 41 AAAGGAAACGTGACTGGGAGGCCATTGCCAGCAGAATGGAG AAAGGAAACGTGACTGGGATGCCATTGCCAGCAGAATGGAG < 41bp 0.434547255946716 0.762336471527573 NA NA prediction 0.524672943055145 Functional Gain - YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75295966 chr14:75295965 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19349 0 0 1 0 1 YLPM1 chr14:75295916 3'AG 75295916 Downstream 50bp 18108 chr20 2844651 2844651 1 + G T UCS 2844652 + 2844632 2844672 41 GAGCCATTAACCAGAAGCTGGGGGACACGCCTGGTGTCTCT GAGCCATTAACCAGAAGCTTGGGGACACGCCTGGTGTCTCT < 41bp 0.613584663628574 0.875915070315401 NA NA prediction 0.524660813373654 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844652 chr20:2844651 synonymous SNV . 0 20 hm7G_associated_SNPs_19351 0 0 0 0 2 VPS16 chr20:2844595 3'AG 2844595 Downstream 57bp 18109 chr20 2844651 2844651 1 + G T UCS 2844652 + 2844632 2844672 41 GAGCCATTAACCAGAAGCTGGGGGACACGCCTGGTGTCTCT GAGCCATTAACCAGAAGCTTGGGGACACGCCTGGTGTCTCT < 41bp 0.613584663628574 0.875915070315401 NA NA prediction 0.524660813373654 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2844652 chr20:2844651 synonymous SNV . 0 20 hm7G_associated_SNPs_19351 0 0 0 0 2 VPS16 chr20:2844729 5'GT 2844729 Upstream 79bp 18110 chr12 88586450 88586450 1 + G T LUAD 88586451 + 88586431 88586471 41 ATCTTAAAGCACTAGAGCTGGACAGAAATAATGCAGATCTT ATCTTAAAGCACTAGAGCTTGACAGAAATAATGCAGATCTT < 41bp 0.567882270769476 0.830210308898607 NA NA prediction 0.524656076258261 Functional Gain - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88586451 chr12:88586450 synonymous SNV . 0 20 hm7G_associated_SNPs_19352 0 0 0 0 1 TMTC3 chr12:88586381 3'AG 88586381 Downstream 70bp 18111 chr16 68358640 68358640 1 + G T UCEC 68358641 + 68358621 68358661 41 GAGCAGGGTGAAGGACAGAGGACAGAAGGCCTTGGTTCTCG GAGCAGGGTGAAGGACAGATGACAGAAGGCCTTGGTTCTCG < 41bp 0.428041547278471 0.762327804521573 NA NA prediction 0.524655609043146 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68358641 chr16:68358640 stopgain 1.000 1 20 hm7G_associated_SNPs_19353 0 0 1 0 2 PRMT7 chr16:68358586 3'AG 68358586 Downstream 55bp 18112 chr16 68358640 68358640 1 + G T UCEC 68358641 + 68358621 68358661 41 GAGCAGGGTGAAGGACAGAGGACAGAAGGCCTTGGTTCTCG GAGCAGGGTGAAGGACAGATGACAGAAGGCCTTGGTTCTCG < 41bp 0.428041547278471 0.762327804521573 NA NA prediction 0.524655609043146 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68358641 chr16:68358640 stopgain 1.000 1 20 hm7G_associated_SNPs_19353 0 0 1 0 2 PRMT7 chr16:68358735 5'GT 68358735 Upstream 96bp 18113 chr17 30807526 30807526 1 + G T LUAD 30807527 + 30807507 30807547 41 GGATTTTGGACCAGGGGGAGGGTGTCCTGATTATTTTCGAT GGATTTTGGACCAGGGGGATGGTGTCCTGATTATTTTCGAT < 41bp 0.581753600714443 0.844077968559908 NA NA prediction 0.524648735690928 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30807527 chr17:30807526 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19354 0 0 1 0 1 PSMD11 chr17:30807507 3'AG 30807507 Downstream 20bp 18114 chr10 85962739 85962739 1 + G T GBM 85962740 + 85962720 85962760 41 TCCGATTCTTCTGCAGGATGGCGGTGGGAGGCTTCATGGGG TCCGATTCTTCTGCAGGATTGCGGTGGGAGGCTTCATGGGG < 41bp 0.605528128134045 0.86785178427385 NA NA prediction 0.52464731227961 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85962740 chr10:85962739 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_19355 0 0 0 0 1 CDHR1 chr10:85962736 3'AG 85962736 Downstream 4bp 18115 chr11 20639410 20639410 1 + G T UCEC 20639411 + 20639391 20639431 41 GTATGCATCATTGGCTAAAGGAATCAAGACTTCAGGAAAAG GTATGCATCATTGGCTAAATGAATCAAGACTTCAGGAAAAG < 41bp 0.594938322494622 0.857245277010222 NA NA prediction 0.524613909031199 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20639411 chr11:20639410 stopgain 1.000 1 20 hm7G_associated_SNPs_19356 0 0 0 0 1 SLC6A5 chr11:20639430 5'GT 20639430 Upstream 21bp 18116 chr11 69933921 69933921 1 + G T LUAD 69933922 + 69933902 69933942 41 TGGCCTGTACTTCAGGGACGGCCGGCGCAAGGTGGACTACA TGGCCTGTACTTCAGGGACTGCCGGCGCAAGGTGGACTACA < 41bp 0.610374975313361 0.87268166593869 NA NA prediction 0.524613381250657 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69933922 chr11:69933921 nonsynonymous SNV 0.843 4 20 hm7G_associated_SNPs_19357 0 0 0 0 1 ANO1 chr11:69933858 3'AG 69933858 Downstream 64bp 18117 chr7 5016059 5016059 1 + G T LIHC 5016060 + 5016040 5016080 41 AACAACTTTCACTGCCATCGGGGACAAGGTAAGTTGTTTGT AACAACTTTCACTGCCATCTGGGACAAGGTAAGTTGTTTGT < 41bp 0.45743794220213 0.762295846851241 NA NA prediction 0.524591693702482 Functional Gain - RNF216P1 ENSG00000196204 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:5016060 chr7:5016059 . . 0 20 hm7G_associated_SNPs_19359 0 0 0 0 1 RNF216P1 chr7:5016067 5'GT 5016067 Upstream 9bp 18118 chr8 38814855 38814855 1 + G T THCA 38814856 + 38814836 38814876 41 TCTAGTGATCTCTTAATGAGGGACAACCTGTTTGAAATAAT TCTAGTGATCTCTTAATGATGGACAACCTGTTTGAAATAAT < 41bp 0.439198802321312 0.762290829778058 NA NA prediction 0.524581659556117 Functional Gain - PLEKHA2 ENSG00000169499 CDS Human protein_coding chr8:38814856 chr8:38814855 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19360 0 0 1 0 2 PLEKHA2 chr8:38814841 3'AG 38814841 Downstream 15bp 18119 chr8 38814855 38814855 1 + G T THCA 38814856 + 38814836 38814876 41 TCTAGTGATCTCTTAATGAGGGACAACCTGTTTGAAATAAT TCTAGTGATCTCTTAATGATGGACAACCTGTTTGAAATAAT < 41bp 0.439198802321312 0.762290829778058 NA NA prediction 0.524581659556117 Functional Gain - PLEKHA2 ENSG00000169499 CDS Human protein_coding chr8:38814856 chr8:38814855 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19360 0 0 1 0 2 PLEKHA2 chr8:38814904 5'GT 38814904 Upstream 50bp 18120 chr10 90699427 90699427 1 - C A UCEC 90699426 - 90699406 90699446 41 AGATTGTCCGGGACATCAAGGAGAAACTGTGTTATGTAGCT AGATTGTCCGGGACATCAATGAGAAACTGTGTTATGTAGCT < 41bp 0.43164178599987 0.762278742228979 NA NA prediction 0.524557484457958 Functional Gain - ACTA2 ENSG00000107796 CDS Human protein_coding chr10:90699426 chr10:90699427 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19361 0 0 0 0 1 ACTA2 chr10:90699455 3'AG 90699455 Downstream 29bp 18121 chr11 20628617 20628617 1 + G T UCEC 20628618 + 20628598 20628638 41 TACCCATCTTCTTCTTGGAGGTGTCGCTGGGCCAGTTTGCC TACCCATCTTCTTCTTGGATGTGTCGCTGGGCCAGTTTGCC < 41bp 0.432325746005245 0.762269125033554 NA NA prediction 0.524538250067109 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20628618 chr11:20628617 nonsynonymous SNV 0.957 5 20 hm7G_associated_SNPs_19362 0 0 0 0 2 SLC6A5 chr11:20628553 3'AG 20628553 Downstream 65bp 18122 chr11 20628617 20628617 1 + G T UCEC 20628618 + 20628598 20628638 41 TACCCATCTTCTTCTTGGAGGTGTCGCTGGGCCAGTTTGCC TACCCATCTTCTTCTTGGATGTGTCGCTGGGCCAGTTTGCC < 41bp 0.432325746005245 0.762269125033554 NA NA prediction 0.524538250067109 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20628618 chr11:20628617 nonsynonymous SNV 0.957 5 20 hm7G_associated_SNPs_19362 0 0 0 0 2 SLC6A5 chr11:20628684 5'GT 20628684 Upstream 68bp 18123 chr12 16189204 16189204 1 + G T GBM 16189205 + 16189185 16189225 41 GAGGCATCCGCAGTGCAAAGGATTCCCTTGCTTGGCTCTCT GAGGCATCCGCAGTGCAAATGATTCCCTTGCTTGGCTCTCT < 41bp 0.439260572698659 0.762255542215168 NA NA prediction 0.524511084430337 Functional Gain - DERA ENSG00000023697 CDS Human protein_coding chr12:16189205 chr12:16189204 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_19364 0 0 1 0 1 DERA chr12:16189166 3'AG 16189166 Downstream 39bp 18124 chr20 31022333 31022333 1 + G T LUSC 31022334 + 31022314 31022354 41 CCACGGAGTCCTCCTGCCGGGGTTGGACTGGCGCCAGGACC CCACGGAGTCCTCCTGCCGTGGTTGGACTGGCGCCAGGACC < 41bp 0.426944018308151 0.762228736522542 NA NA prediction 0.524457473045083 Functional Gain - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31022334 chr20:31022333 synonymous SNV . 0 20 hm7G_associated_SNPs_19366 0 0 1 0 1 ASXL1 chr20:31022235 3'AG 31022235 Downstream 99bp 18125 chr16 19498559 19498559 1 + G T COAD 19498560 + 19498540 19498580 41 CTCCGAGCAAAGCCTGGCGGGCCTCACAGATGATGACTTTC CTCCGAGCAAAGCCTGGCGTGCCTCACAGATGATGACTTTC < 41bp 0.427536025809584 0.762226075531139 NA NA prediction 0.524452151062278 Functional Gain - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19498560 chr16:19498559 synonymous SNV . 0 20 hm7G_associated_SNPs_19367 0 0 0 0 2 TMC5 chr16:19498515 3'AG 19498515 Downstream 45bp 18126 chr16 19498559 19498559 1 + G T COAD 19498560 + 19498540 19498580 41 CTCCGAGCAAAGCCTGGCGGGCCTCACAGATGATGACTTTC CTCCGAGCAAAGCCTGGCGTGCCTCACAGATGATGACTTTC < 41bp 0.427536025809584 0.762226075531139 NA NA prediction 0.524452151062278 Functional Gain - TMC5 ENSG00000103534 CDS Human protein_coding chr16:19498560 chr16:19498559 synonymous SNV . 0 20 hm7G_associated_SNPs_19367 0 0 0 0 2 TMC5 chr16:19498648 5'GT 19498648 Upstream 90bp 18127 chr19 40712040 40712040 1 + G T LUAD 40712041 + 40712021 40712061 41 GCTCAAGCTGCGGGAAGGCGGCAGCCACATCAGCCTGCCCT GCTCAAGCTGCGGGAAGGCTGCAGCCACATCAGCCTGCCCT < 41bp 0.603941924687516 0.866155752869316 NA NA prediction 0.524427656363601 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40712041 chr19:40712040 nonsynonymous SNV 0.893 3 20 hm7G_associated_SNPs_19370 0 0 1 0 1 MAP3K10 chr19:40712064 5'GT 40712064 Upstream 25bp 18128 chr9 12695518 12695518 1 + G T LUAD 12695519 + 12695499 12695539 41 TTTTGTATCCCTAAAGTCAGGAGAAATCTTCTGGACTTAAG TTTTGTATCCCTAAAGTCATGAGAAATCTTCTGGACTTAAG < 41bp 0.576439150311413 0.838650320875966 NA NA prediction 0.524422341129106 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12695519 chr9:12695518 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_19371 0 0 0 0 1 TYRP1 chr9:12695515 3'AG 12695515 Downstream 4bp 18129 chr13 78130761 78130761 1 + G T LIHC 78130762 + 78130742 78130782 41 ACCACTCAGGGAACCACACGGAAGCAGCAGGATTTTCACGA ACCACTCAGGGAACCACACTGAAGCAGCAGGATTTTCACGA < 41bp 0.444573972287054 0.762184721702377 NA NA prediction 0.524369443404754 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78130762 chr13:78130761 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_19375 0 0 0 0 2 SCEL chr13:78130731 3'AG 78130731 Downstream 31bp 18130 chr13 78130761 78130761 1 + G T LIHC 78130762 + 78130742 78130782 41 ACCACTCAGGGAACCACACGGAAGCAGCAGGATTTTCACGA ACCACTCAGGGAACCACACTGAAGCAGCAGGATTTTCACGA < 41bp 0.444573972287054 0.762184721702377 NA NA prediction 0.524369443404754 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78130762 chr13:78130761 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_19375 0 0 0 0 2 SCEL chr13:78130848 5'GT 78130848 Upstream 88bp 18131 chr12 55252009 55252009 1 + G T GBM 55252010 + 55251990 55252030 41 GGTTGGGGATCTCCCGAATGGTAGAGTGTGTCCCTGAGATG GGTTGGGGATCTCCCGAATTGTAGAGTGTGTCCCTGAGATG < 41bp 0.472669443581591 0.762170499667546 NA NA prediction 0.524340999335092 Functional Gain - MUCL1 ENSG00000172551 CDS Human protein_coding chr12:55252010 chr12:55252009 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_19376 0 0 0 0 1 MUCL1 chr12:55251977 3'AG 55251977 Downstream 33bp 18132 chr7 20778751 20778751 1 + G T LUAD 20778752 + 20778732 20778772 41 AGACAGCCGCAGTCAAGAAGGGAAAAAGCCAGTAAGCACAA AGACAGCCGCAGTCAAGAATGGAAAAAGCCAGTAAGCACAA < 41bp 0.450696737590774 0.762156464552203 NA NA prediction 0.524312929104406 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20778752 chr7:20778751 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_19377 0 0 0 0 1 ABCB5 chr7:20778762 5'GT 20778762 Upstream 12bp 18133 chr1 119925580 119925580 1 + G T LUAD 119925581 + 119925561 119925601 41 TGAGAGATGTGTCTGAGGTGGACACCAGAACCACAATCCAA TGAGAGATGTGTCTGAGGTTGACACCAGAACCACAATCCAA < 41bp 0.597183764525738 0.85933627116403 NA NA prediction 0.524305013276584 Functional Gain - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119925581 chr1:119925580 synonymous SNV . 0 20 hm7G_associated_SNPs_19378 0 0 0 0 1 HAO2 chr1:119925538 3'AG 119925538 Downstream 43bp 18134 chr8 92365165 92365165 1 + G T HNSC 92365166 + 92365146 92365186 41 TATTGTTGTGGGACTGAAGGGAATGCTAATACAGTTCCGAG TATTGTTGTGGGACTGAAGTGAATGCTAATACAGTTCCGAG < 41bp 0.456757450302413 0.762146592032822 NA NA prediction 0.524293184065644 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92365166 chr8:92365165 stopgain 1.000 1 20 hm7G_associated_SNPs_19379 0 0 0 1 1 SLC26A7 chr8:92365224 5'GT 92365224 Upstream 60bp 18135 chr18 10485748 10485748 1 + G T UCEC 10485749 + 10485729 10485769 41 CGCGGCGTCCTCTCGTCCAGGGTCATGGGAGGCACCGAGTT CGCGGCGTCCTCTCGTCCATGGTCATGGGAGGCACCGAGTT < 41bp 0.608764543119873 0.87089727144906 NA NA prediction 0.524265456658373 Functional Gain - APCDD1 ENSG00000154856;ENSG00000154856 exonic;splicing Human protein_coding chr18:10485749 chr18:10485748 nonsynonymous SNV 0.129 2 20 hm7G_associated_SNPs_19380 0 0 0 0 1 APCDD1 chr18:10485780 5'GT 10485780 Upstream 33bp 18136 chr19 38979900 38979900 1 + G T HNSC 38979901 + 38979881 38979921 41 TCACTGAGGAAGAAGAGGAGGAGGACGAGGAGGAAGAGGGT TCACTGAGGAAGAAGAGGATGAGGACGAGGAGGAAGAGGGT < 41bp 0.536234600736315 0.798356584288161 NA NA prediction 0.524243967103693 Functional Gain - RYR1 ENSG00000196218 CDS Human protein_coding chr19:38979901 chr19:38979900 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_19382 0 0 0 0 1 RYR1 chr19:38979817 3'AG 38979817 Downstream 84bp 18137 chr3 147128870 147128870 1 + G T COAD 147128871 + 147128851 147128891 41 AATTTAAAGATCCACAAAAGGACGCACACAGGTACGGAAAC AATTTAAAGATCCACAAAATGACGCACACAGGTACGGAAAC < 41bp 0.574319982269377 0.83642460093544 NA NA prediction 0.524209237332125 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147128871 chr3:147128870 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19383 0 0 0 0 1 ZIC1 chr3:147128881 5'GT 147128881 Upstream 12bp 18138 chr2 79255029 79255029 1 + G T BRCA 79255030 + 79255010 79255050 41 CTCCACCATCTTAAACCCTGGCCACTGTGGGAGCCTGTCAA CTCCACCATCTTAAACCCTTGCCACTGTGGGAGCCTGTCAA < 41bp 0.600145583851862 0.862245841925383 NA NA prediction 0.524200516147044 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255030 chr2:79255029 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_19385 0 0 0 0 2 REG3G chr2:79254933 3'AG 79254933 Downstream 97bp 18139 chr2 79255029 79255029 1 + G T BRCA 79255030 + 79255010 79255050 41 CTCCACCATCTTAAACCCTGGCCACTGTGGGAGCCTGTCAA CTCCACCATCTTAAACCCTTGCCACTGTGGGAGCCTGTCAA < 41bp 0.600145583851862 0.862245841925383 NA NA prediction 0.524200516147044 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255030 chr2:79255029 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_19385 0 0 0 0 2 REG3G chr2:79255059 5'GT 79255059 Upstream 31bp 18140 chr1 117632747 117632747 1 + G T UCEC 117632748 + 117632728 117632768 41 TGACAATGGCTCAAAGAAAGGAGGAGAACGGTTAAGTATTT TGACAATGGCTCAAAGAAATGAGGAGAACGGTTAAGTATTT < 41bp 0.580874375476155 0.842954120180959 NA NA prediction 0.524159489409608 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117632748 chr1:117632747 stopgain 1.000 0 20 hm7G_associated_SNPs_19388 0 0 1 0 2 TTF2 chr1:117632677 3'AG 117632677 Downstream 71bp 18141 chr1 117632747 117632747 1 + G T UCEC 117632748 + 117632728 117632768 41 TGACAATGGCTCAAAGAAAGGAGGAGAACGGTTAAGTATTT TGACAATGGCTCAAAGAAATGAGGAGAACGGTTAAGTATTT < 41bp 0.580874375476155 0.842954120180959 NA NA prediction 0.524159489409608 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117632748 chr1:117632747 stopgain 1.000 0 20 hm7G_associated_SNPs_19388 0 0 1 0 2 TTF2 chr1:117632830 5'GT 117632830 Upstream 84bp 18142 chr19 4354043 4354043 1 + G T UCEC 4354044 + 4354024 4354064 41 TGCCTTTTTCTCTCCCAGAGGCCACAACCCCAGGGAAGCGG TGCCTTTTTCTCTCCCAGATGCCACAACCCCAGGGAAGCGG < 41bp 0.428835539610241 0.762043336393374 NA NA prediction 0.524086672786748 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4354044 chr19:4354043 nonsynonymous SNV 0.289 0 20 hm7G_associated_SNPs_19390 0 0 1 0 2 MPND chr19:4354042 3'AG 4354042 Downstream 2bp 18143 chr19 4354043 4354043 1 + G T UCEC 4354044 + 4354024 4354064 41 TGCCTTTTTCTCTCCCAGAGGCCACAACCCCAGGGAAGCGG TGCCTTTTTCTCTCCCAGATGCCACAACCCCAGGGAAGCGG < 41bp 0.428835539610241 0.762043336393374 NA NA prediction 0.524086672786748 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4354044 chr19:4354043 nonsynonymous SNV 0.289 0 20 hm7G_associated_SNPs_19390 0 0 1 0 2 MPND chr19:4354126 5'GT 4354126 Upstream 84bp 18144 chr9 74586509 74586509 1 + G T MESO 74586510 + 74586490 74586530 41 TGAAGTTTGCGCAAAATGTGGAAAGAAAGAAGACATTGTTA TGAAGTTTGCGCAAAATGTTGAAAGAAAGAAGACATTGTTA < 41bp 0.462644721163489 0.762024350034377 NA NA prediction 0.524048700068755 Functional Gain - C9orf85 ENSG00000155621 CDS Human protein_coding chr9:74586510 chr9:74586509 stopgain 1.000 1 20 hm7G_associated_SNPs_19394 0 0 0 4 1 C9orf85 chr9:74586534 5'GT 74586534 Upstream 26bp 18145 chr8 86019572 86019572 1 + G T KIRC 86019573 + 86019553 86019593 41 TGGCGGCAGAGGCGGAAGTGGAAAACGAAGACGGCGACAGC TGGCGGCAGAGGCGGAAGTTGAAAACGAAGACGGCGACAGC < 41bp 0.573514711590274 0.835533060313301 NA NA prediction 0.524036697446054 Functional Gain - LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86019573 chr8:86019572 synonymous SNV . 0 20 hm7G_associated_SNPs_19395 0 0 1 0 1 LRRCC1 chr8:86019634 5'GT 86019634 Upstream 63bp 18146 chr1 167666425 167666425 1 + G T KIRC 167666426 + 167666406 167666446 41 GAGAACTTGGAGATTTCAGGGCGGTGGAGTCATCTCAGCAG GAGAACTTGGAGATTTCAGTGCGGTGGAGTCATCTCAGCAG < 41bp 0.425625854745304 0.762006815204056 NA NA prediction 0.524013630408111 Functional Gain - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167666426 chr1:167666425 nonsynonymous SNV 0.856 0 20 hm7G_associated_SNPs_19396 0 0 0 0 1 RCSD1 chr1:167666336 3'AG 167666336 Downstream 90bp 18147 chr19 45165067 45165067 1 + G T COAD 45165068 + 45165048 45165088 41 CCAGGATCCACAGACAGAGGGCACAAGGTGACAGCGTCGGG CCAGGATCCACAGACAGAGTGCACAAGGTGACAGCGTCGGG < 41bp 0.56941216153351 0.831405118956305 NA NA prediction 0.523985914845591 Functional Gain - PVR ENSG00000073008 CDS Human protein_coding chr19:45165068 chr19:45165067 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_19398 0 0 1 0 1 PVR chr19:45165007 3'AG 45165007 Downstream 61bp 18148 chrX 100509851 100509851 1 + G T LUSC 100509852 + 100509832 100509872 41 TGCTGCTTTCTTCTAGGCCGGCTTCTTCCCCGATGTGGCCA TGCTGCTTTCTTCTAGGCCTGCTTCTTCCCCGATGTGGCCA < 41bp 0.609529343006361 0.871518099237825 NA NA prediction 0.523977512462929 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100509852 chrX:100509851 synonymous SNV . 0 20 hm7G_associated_SNPs_19399 0 0 0 0 2 DRP2 chrX:100509848 3'AG 100509848 Downstream 4bp 18149 chrX 100509851 100509851 1 + G T LUSC 100509852 + 100509832 100509872 41 TGCTGCTTTCTTCTAGGCCGGCTTCTTCCCCGATGTGGCCA TGCTGCTTTCTTCTAGGCCTGCTTCTTCCCCGATGTGGCCA < 41bp 0.609529343006361 0.871518099237825 NA NA prediction 0.523977512462929 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100509852 chrX:100509851 synonymous SNV . 0 20 hm7G_associated_SNPs_19399 0 0 0 0 2 DRP2 chrX:100509913 5'GT 100509913 Upstream 63bp 18150 chr12 56361650 56361650 1 + G T SARC 56361651 + 56361631 56361671 41 CCTCTCCAAGTGAGACTGAGGGTGTGCCCAGTACTGCCATC CCTCTCCAAGTGAGACTGATGGTGTGCCCAGTACTGCCATC < 41bp 0.608763015778925 0.870749408309561 NA NA prediction 0.523972785061272 Functional Gain - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361651 chr12:56361650 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_19400 0 0 1 0 2 CDK2 chr12:56361641 3'AG 56361641 Downstream 10bp 18151 chr12 56361650 56361650 1 + G T SARC 56361651 + 56361631 56361671 41 CCTCTCCAAGTGAGACTGAGGGTGTGCCCAGTACTGCCATC CCTCTCCAAGTGAGACTGATGGTGTGCCCAGTACTGCCATC < 41bp 0.608763015778925 0.870749408309561 NA NA prediction 0.523972785061272 Functional Gain - CDK2 ENSG00000123374 CDS Human protein_coding chr12:56361651 chr12:56361650 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_19400 0 0 1 0 2 CDK2 chr12:56361718 5'GT 56361718 Upstream 69bp 18152 chr10 43656003 43656003 1 + G T STAD 43656004 + 43655984 43656024 41 GGTGTATTTTGGTAAAGAAGGACTGTCTAAAGTCAAGTCTA GGTGTATTTTGGTAAAGAATGACTGTCTAAAGTCAAGTCTA < 41bp 0.586249783814646 0.8482237520763 NA NA prediction 0.523947936523309 Functional Gain - CSGALNACT2 ENSG00000169826 CDS Human protein_coding chr10:43656004 chr10:43656003 stopgain 1.000 1 20 hm7G_associated_SNPs_19402 0 0 1 0 2 CSGALNACT2 chr10:43655942 3'AG 43655942 Downstream 62bp 18153 chr10 43656003 43656003 1 + G T STAD 43656004 + 43655984 43656024 41 GGTGTATTTTGGTAAAGAAGGACTGTCTAAAGTCAAGTCTA GGTGTATTTTGGTAAAGAATGACTGTCTAAAGTCAAGTCTA < 41bp 0.586249783814646 0.8482237520763 NA NA prediction 0.523947936523309 Functional Gain - CSGALNACT2 ENSG00000169826 CDS Human protein_coding chr10:43656004 chr10:43656003 stopgain 1.000 1 20 hm7G_associated_SNPs_19402 0 0 1 0 2 CSGALNACT2 chr10:43656043 5'GT 43656043 Upstream 41bp 18154 chrX 14550436 14550436 1 + G T LUAD 14550437 + 14550417 14550457 41 TATCTCCTTCAGATTTCTTGGACAAGTTAATGGGAAGGACA TATCTCCTTCAGATTTCTTTGACAAGTTAATGGGAAGGACA < 41bp 0.440228383859586 0.761973111475908 NA NA prediction 0.523946222951816 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550437 chrX:14550436 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19403 0 0 0 0 2 GLRA2 chrX:14550361 3'AG 14550361 Downstream 76bp 18155 chrX 14550436 14550436 1 + G T LUAD 14550437 + 14550417 14550457 41 TATCTCCTTCAGATTTCTTGGACAAGTTAATGGGAAGGACA TATCTCCTTCAGATTTCTTTGACAAGTTAATGGGAAGGACA < 41bp 0.440228383859586 0.761973111475908 NA NA prediction 0.523946222951816 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550437 chrX:14550436 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19403 0 0 0 0 2 GLRA2 chrX:14550494 5'GT 14550494 Upstream 59bp 18156 chr6 7606353 7606353 1 + G T STAD 7606354 + 7606334 7606374 41 TCACGACATAGAAGGGATAGGAGTAGAAGCCCACATAAAAG TCACGACATAGAAGGGATATGAGTAGAAGCCCACATAAAAG < 41bp 0.456747981693548 0.761956350347329 NA NA prediction 0.523912700694658 Functional Gain - SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7606354 chr6:7606353 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_19407 0 0 1 1 2 SNRNP48 chr6:7606264 3'AG 7606264 Downstream 90bp 18157 chr6 7606353 7606353 1 + G T STAD 7606354 + 7606334 7606374 41 TCACGACATAGAAGGGATAGGAGTAGAAGCCCACATAAAAG TCACGACATAGAAGGGATATGAGTAGAAGCCCACATAAAAG < 41bp 0.456747981693548 0.761956350347329 NA NA prediction 0.523912700694658 Functional Gain - SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7606354 chr6:7606353 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_19407 0 0 1 1 2 SNRNP48 chr6:7606428 5'GT 7606428 Upstream 76bp 18158 chr4 647709 647709 1 - C A LUAD 647708 - 647688 647728 41 AGGCCCGCACCGTGTAGAAGGCCTTGTGGAACTGCCTCTCG AGGCCCGCACCGTGTAGAATGCCTTGTGGAACTGCCTCTCG < 41bp 0.439891262585955 0.76195197731503 NA NA prediction 0.523903954630061 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:647708 chr4:647709 synonymous SNV . 0 20 hm7G_associated_SNPs_19408 0 0 0 0 1 PDE6B chr4:647760 3'AG 647760 Downstream 52bp 18159 chr6 37411795 37411795 1 + G T LUAD 37411796 + 37411776 37411816 41 ATCTACTACAAGCCTTAGTGGGTCTGATAGTGAGACCGAGG ATCTACTACAAGCCTTAGTTGGTCTGATAGTGAGACCGAGG < 41bp 0.604706997144561 0.866658201961918 NA NA prediction 0.523902409634713 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37411796 chr6:37411795 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_19409 0 0 0 0 1 CMTR1 chr6:37411775 3'AG 37411775 Downstream 21bp 18160 chr16 2103395 2103395 1 + G T COAD 2103396 + 2103376 2103416 41 GATCTGTTGCAGCCGGAGCGGCCGCTGGAGGCCCGGCACGC GATCTGTTGCAGCCGGAGCTGCCGCTGGAGGCCCGGCACGC < 41bp 0.428043822395276 0.76194256396448 NA NA prediction 0.52388512792896 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2103396 chr16:2103395 nonsynonymous SNV 0.132 3 20 hm7G_associated_SNPs_19411 0 0 1 0 2 TSC2 chr16:2103343 3'AG 2103343 Downstream 53bp 18161 chr16 2103395 2103395 1 + G T COAD 2103396 + 2103376 2103416 41 GATCTGTTGCAGCCGGAGCGGCCGCTGGAGGCCCGGCACGC GATCTGTTGCAGCCGGAGCTGCCGCTGGAGGCCCGGCACGC < 41bp 0.428043822395276 0.76194256396448 NA NA prediction 0.52388512792896 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2103396 chr16:2103395 nonsynonymous SNV 0.132 3 20 hm7G_associated_SNPs_19411 0 0 1 0 2 TSC2 chr16:2103453 5'GT 2103453 Upstream 59bp 18162 chr17 25967675 25967675 1 + G T LUSC 25967676 + 25967656 25967696 41 CCTCGGTTTGAAGATGGAGGGTACGTGGTGTGCAACACGAG CCTCGGTTTGAAGATGGAGTGTACGTGGTGTGCAACACGAG < 41bp 0.603756281773437 0.865693272623323 NA NA prediction 0.523873981699771 Functional Gain - LGALS9 ENSG00000168961 CDS Human protein_coding chr17:25967676 chr17:25967675 nonsynonymous SNV 0.897 3 20 hm7G_associated_SNPs_19412 0 0 0 0 2 LGALS9 chr17:25967598 3'AG 25967598 Downstream 78bp 18163 chr17 25967675 25967675 1 + G T LUSC 25967676 + 25967656 25967696 41 CCTCGGTTTGAAGATGGAGGGTACGTGGTGTGCAACACGAG CCTCGGTTTGAAGATGGAGTGTACGTGGTGTGCAACACGAG < 41bp 0.603756281773437 0.865693272623323 NA NA prediction 0.523873981699771 Functional Gain - LGALS9 ENSG00000168961 CDS Human protein_coding chr17:25967676 chr17:25967675 nonsynonymous SNV 0.897 3 20 hm7G_associated_SNPs_19412 0 0 0 0 2 LGALS9 chr17:25967669 3'AG 25967669 Downstream 7bp 18164 chr9 131247126 131247126 1 + G T COAD 131247127 + 131247107 131247147 41 AGCGAGCCGAGAAGAGCGAGGAGTATGCTGAGCAGCTACAC AGCGAGCCGAGAAGAGCGATGAGTATGCTGAGCAGCTACAC < 41bp 0.595892933667768 0.857828479010207 NA NA prediction 0.523871090684878 Functional Gain - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131247127 chr9:131247126 nonsynonymous SNV 0.932 4 20 hm7G_associated_SNPs_19413 0 0 1 0 1 ODF2 chr9:131247165 5'GT 131247165 Upstream 40bp 18165 chr6 132168961 132168961 1 + G T LUSC 132168962 + 132168942 132168982 41 AATACTTGGTTGTATATTTGGGTTGAAACCAAGCTGTGCCA AATACTTGGTTGTATATTTTGGTTGAAACCAAGCTGTGCCA < 41bp 0.438243260560485 0.761908838815555 NA NA prediction 0.523817677631111 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132168962 chr6:132168961 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_19416 0 0 1 0 2 ENPP1 chr6:132168916 3'AG 132168916 Downstream 46bp 18166 chr6 132168961 132168961 1 + G T LUSC 132168962 + 132168942 132168982 41 AATACTTGGTTGTATATTTGGGTTGAAACCAAGCTGTGCCA AATACTTGGTTGTATATTTTGGTTGAAACCAAGCTGTGCCA < 41bp 0.438243260560485 0.761908838815555 NA NA prediction 0.523817677631111 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132168962 chr6:132168961 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_19416 0 0 1 0 2 ENPP1 chr6:132168988 5'GT 132168988 Upstream 28bp 18167 chrX 153649252 153649252 1 + G T LIHC 153649253 + 153649233 153649273 41 TTCCCTCAGGTGGAGATGCGGAAAGCCCTGACGGACTTCAT TTCCCTCAGGTGGAGATGCTGAAAGCCCTGACGGACTTCAT < 41bp 0.580293460773344 0.84219580444164 NA NA prediction 0.523804687336592 Functional Gain - TAZ ENSG00000102125 CDS Human protein_coding chrX:153649253 chrX:153649252 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_19417 0 0 1 0 1 TAZ chrX:153649242 3'AG 153649242 Downstream 11bp 18168 chr12 6970608 6970608 1 + G T UCEC 6970609 + 6970589 6970629 41 AACCCATTCTGTCACCAGAGGAGCTTCTGGAGTACGAGGAG AACCCATTCTGTCACCAGATGAGCTTCTGGAGTACGAGGAG < 41bp 0.606914052457012 0.868813768017104 NA NA prediction 0.523799431120185 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6970609 chr12:6970608 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19418 0 0 1 0 1 USP5 chr12:6970607 3'AG 6970607 Downstream 2bp 18169 chr13 25280511 25280511 1 + G T LUAD 25280512 + 25280492 25280532 41 ACATGAGCTCAGAACAGCTGGATGAGATCTTAGCCAACTAC ACATGAGCTCAGAACAGCTTGATGAGATCTTAGCCAACTAC < 41bp 0.41537319961645 0.761898399687586 NA NA prediction 0.523796799375173 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25280512 chr13:25280511 synonymous SNV . 0 20 hm7G_associated_SNPs_19419 0 0 0 0 2 ATP12A chr13:25280451 3'AG 25280451 Downstream 61bp 18170 chr13 25280511 25280511 1 + G T LUAD 25280512 + 25280492 25280532 41 ACATGAGCTCAGAACAGCTGGATGAGATCTTAGCCAACTAC ACATGAGCTCAGAACAGCTTGATGAGATCTTAGCCAACTAC < 41bp 0.41537319961645 0.761898399687586 NA NA prediction 0.523796799375173 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25280512 chr13:25280511 synonymous SNV . 0 20 hm7G_associated_SNPs_19419 0 0 0 0 2 ATP12A chr13:25280601 5'GT 25280601 Upstream 91bp 18171 chr5 177546899 177546899 1 + G T LUAD 177546900 + 177546880 177546920 41 AGACCTCGCTGCCAGAACGGGGTCGCTTTGACAAGGTGCAC AGACCTCGCTGCCAGAACGTGGTCGCTTTGACAAGGTGCAC < 41bp 0.422457483196635 0.761878420720158 NA NA prediction 0.523756841440315 Functional Gain - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177546900 chr5:177546899 synonymous SNV . 0 20 hm7G_associated_SNPs_19423 0 0 0 0 1 N4BP3 chr5:177546914 5'GT 177546914 Upstream 16bp 18172 chr17 32962028 32962028 1 + G T UCEC 32962029 + 32962009 32962049 41 TAGTCAGTGACTTCATGCGGGTGGGCGATCCCCGAGTGGCA TAGTCAGTGACTTCATGCGTGTGGGCGATCCCCGAGTGGCA < 41bp 0.431411952503616 0.761877276885382 NA NA prediction 0.523754553770764 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32962029 chr17:32962028 synonymous SNV . 0 20 hm7G_associated_SNPs_19424 0 0 1 0 1 TMEM132E chr17:32962106 5'GT 32962106 Upstream 79bp 18173 chr1 22923940 22923940 1 + G T UCEC 22923941 + 22923921 22923961 41 CGGGAGATCGAGGCCTCTAGGATCCACATCGAGAAAATCAT CGGGAGATCGAGGCCTCTATGATCCACATCGAGAAAATCAT < 41bp 0.427047806495103 0.761875820278088 NA NA prediction 0.523751640556175 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22923941 chr1:22923940 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_19426 0 0 0 0 1 EPHA8 chr1:22923969 5'GT 22923969 Upstream 30bp 18174 chr8 124154635 124154635 1 + G T BRCA 124154636 + 124154616 124154656 41 GAAGTAGCCAAACTCCTTAGGGAAAACAGAAGGAAAGAAAT GAAGTAGCCAAACTCCTTATGGAAAACAGAAGGAAAGAAAT < 41bp 0.590492033659582 0.852354734216752 NA NA prediction 0.52372540111434 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124154636 chr8:124154635 nonsynonymous SNV 0.763 1 20 hm7G_associated_SNPs_19428 0 0 0 0 1 TBC1D31 chr8:124154696 5'GT 124154696 Upstream 62bp 18175 chr19 54930431 54930431 1 + G T LIHC 54930432 + 54930412 54930452 41 GTCCAAGATCCCCTCGCCCGGGGGAGGCTGCGTCACCTGGA GTCCAAGATCCCCTCGCCCTGGGGAGGCTGCGTCACCTGGA < 41bp 0.593545167528115 0.855392228824986 NA NA prediction 0.523694122593743 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54930432 chr19:54930431 nonsynonymous SNV 0.164 4 20 hm7G_associated_SNPs_19431 0 0 0 0 1 TTYH1 chr19:54930480 5'GT 54930480 Upstream 50bp 18176 chr4 68442954 68442954 1 + G T UCEC 68442955 + 68442935 68442975 41 AAGTGGGGAAGAATGGAGAGGCTTCATTCTTACAGTAACAG AAGTGGGGAAGAATGGAGATGCTTCATTCTTACAGTAACAG < 41bp 0.59839077029099 0.860234874913927 NA NA prediction 0.523688209245874 Functional Gain - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68442955 chr4:68442954 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19432 0 0 0 0 2 STAP1 chr4:68442921 3'AG 68442921 Downstream 34bp 18177 chr4 68442954 68442954 1 + G T UCEC 68442955 + 68442935 68442975 41 AAGTGGGGAAGAATGGAGAGGCTTCATTCTTACAGTAACAG AAGTGGGGAAGAATGGAGATGCTTCATTCTTACAGTAACAG < 41bp 0.59839077029099 0.860234874913927 NA NA prediction 0.523688209245874 Functional Gain - STAP1 ENSG00000035720 CDS Human protein_coding chr4:68442955 chr4:68442954 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19432 0 0 0 0 2 STAP1 chr4:68442977 5'GT 68442977 Upstream 24bp 18178 chr10 105184745 105184745 1 + G T UCEC 105184746 + 105184726 105184766 41 TTTTCTCTCTTCTAGCTGAGGAAAGGCAGCGAACACCAGGC TTTTCTCTCTTCTAGCTGATGAAAGGCAGCGAACACCAGGC < 41bp 0.438023481990247 0.761798317099058 NA NA prediction 0.523596634198115 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105184746 chr10:105184745 nonsynonymous SNV 0.292 1 20 hm7G_associated_SNPs_19433 0 0 0 0 1 PDCD11 chr10:105184741 3'AG 105184741 Downstream 5bp 18179 chr9 129974501 129974501 1 + G T LUAD 129974502 + 129974482 129974522 41 AAAAACCCTGCTCAAGGAAGGGCGGAAGCCTGCGGTAAGTA AAAAACCCTGCTCAAGGAATGGCGGAAGCCTGCGGTAAGTA < 41bp 0.431984030439348 0.761791845252759 NA NA prediction 0.523583690505519 Functional Gain - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974502 chr9:129974501 nonsynonymous SNV 0.941 3 20 hm7G_associated_SNPs_19434 0 0 1 0 2 RALGPS1 chr9:129974410 3'AG 129974410 Downstream 92bp 18180 chr9 129974501 129974501 1 + G T LUAD 129974502 + 129974482 129974522 41 AAAAACCCTGCTCAAGGAAGGGCGGAAGCCTGCGGTAAGTA AAAAACCCTGCTCAAGGAATGGCGGAAGCCTGCGGTAAGTA < 41bp 0.431984030439348 0.761791845252759 NA NA prediction 0.523583690505519 Functional Gain - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129974502 chr9:129974501 nonsynonymous SNV 0.941 3 20 hm7G_associated_SNPs_19434 0 0 1 0 2 RALGPS1 chr9:129974515 5'GT 129974515 Upstream 15bp 18181 chr13 114156124 114156124 1 + G T UCEC 114156125 + 114156105 114156145 41 CTGGCTATGTACAGCCATAGGATTGCCTACAATGTTTGGTT CTGGCTATGTACAGCCATATGATTGCCTACAATGTTTGGTT < 41bp 0.431858055710811 0.761760924220568 NA NA prediction 0.523521848441136 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114156125 chr13:114156124 stopgain 0.003 1 20 hm7G_associated_SNPs_19436 0 0 1 0 2 TMCO3 chr13:114156067 3'AG 114156067 Downstream 58bp 18182 chr13 114156124 114156124 1 + G T UCEC 114156125 + 114156105 114156145 41 CTGGCTATGTACAGCCATAGGATTGCCTACAATGTTTGGTT CTGGCTATGTACAGCCATATGATTGCCTACAATGTTTGGTT < 41bp 0.431858055710811 0.761760924220568 NA NA prediction 0.523521848441136 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114156125 chr13:114156124 stopgain 0.003 1 20 hm7G_associated_SNPs_19436 0 0 1 0 2 TMCO3 chr13:114156195 5'GT 114156195 Upstream 72bp 18183 chr4 40350899 40350899 1 + G T LUSC 40350900 + 40350880 40350920 41 TTCCTTATCTGACCTTCAGGGCTGATGATGAATCTTCAGAG TTCCTTATCTGACCTTCAGTGCTGATGATGAATCTTCAGAG < 41bp 0.454138020536971 0.761747398780554 NA NA prediction 0.523494797561107 Functional Gain - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40350900 chr4:40350899 nonsynonymous SNV 0.728 1 20 hm7G_associated_SNPs_19437 0 0 0 0 1 CHRNA9 chr4:40350899 3'AG 40350899 Downstream 1bp 18184 chr12 10165474 10165474 1 + G T COAD 10165475 + 10165455 10165495 41 ATTGGGCTGGTGACATTGGGGATGATGTGTAAGTATATCAG ATTGGGCTGGTGACATTGGTGATGATGTGTAAGTATATCAG < 41bp 0.575977774825655 0.837713658442888 NA NA prediction 0.523471767234466 Functional Gain - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10165475 chr12:10165474 nonsynonymous SNV 0.632 2 20 hm7G_associated_SNPs_19438 0 0 0 3 2 CLEC12B chr12:10165384 3'AG 10165384 Downstream 91bp 18185 chr12 10165474 10165474 1 + G T COAD 10165475 + 10165455 10165495 41 ATTGGGCTGGTGACATTGGGGATGATGTGTAAGTATATCAG ATTGGGCTGGTGACATTGGTGATGATGTGTAAGTATATCAG < 41bp 0.575977774825655 0.837713658442888 NA NA prediction 0.523471767234466 Functional Gain - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10165475 chr12:10165474 nonsynonymous SNV 0.632 2 20 hm7G_associated_SNPs_19438 0 0 0 3 2 CLEC12B chr12:10165482 5'GT 10165482 Upstream 9bp 18186 chr19 58130858 58130858 1 + G T UCEC 58130859 + 58130839 58130879 41 GACTCTAGTCACAGCAGGAGGGGCTTGGACAGGCCCTGGTG GACTCTAGTCACAGCAGGATGGGCTTGGACAGGCCCTGGTG < 41bp 0.43867338687127 0.761732120783228 NA NA prediction 0.523464241566457 Functional Gain - ZNF134 ENSG00000213762 CDS Human protein_coding chr19:58130859 chr19:58130858 nonsynonymous SNV 0.120 1 20 hm7G_associated_SNPs_19439 0 0 0 0 2 ZNF134 chr19:58130780 3'AG 58130780 Downstream 79bp 18187 chr19 58130858 58130858 1 + G T UCEC 58130859 + 58130839 58130879 41 GACTCTAGTCACAGCAGGAGGGGCTTGGACAGGCCCTGGTG GACTCTAGTCACAGCAGGATGGGCTTGGACAGGCCCTGGTG < 41bp 0.43867338687127 0.761732120783228 NA NA prediction 0.523464241566457 Functional Gain - ZNF134 ENSG00000213762 CDS Human protein_coding chr19:58130859 chr19:58130858 nonsynonymous SNV 0.120 1 20 hm7G_associated_SNPs_19439 0 0 0 0 2 ZNF134 chr19:58130876 5'GT 58130876 Upstream 19bp 18188 chr9 36087903 36087903 1 + G T UCEC 36087904 + 36087884 36087924 41 ACACCCTCCTCCCTCTACAGGCCTCGATGGGGCTAAATTGC ACACCCTCCTCCCTCTACATGCCTCGATGGGGCTAAATTGC < 41bp 0.439480453787118 0.761729045124216 NA NA prediction 0.523458090248432 Functional Gain - RECK ENSG00000122707 CDS Human protein_coding chr9:36087904 chr9:36087903 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_19440 0 0 0 0 1 RECK chr9:36087958 5'GT 36087958 Upstream 56bp 18189 chr16 67039178 67039178 1 + G T UCEC 67039179 + 67039159 67039199 41 AGGTACCACTTGTGGTGGAGGAGTACCTGGACAATGTCAAT AGGTACCACTTGTGGTGGATGAGTACCTGGACAATGTCAAT < 41bp 0.431224336309989 0.761709909866708 NA NA prediction 0.523419819733415 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67039179 chr16:67039178 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_19442 0 0 0 0 1 CES4A chr16:67039143 3'AG 67039143 Downstream 36bp 18190 chr15 66610820 66610820 1 + G T THCA 66610821 + 66610801 66610841 41 ATACTTCAGAAGAACTGGCGGGATTATGTGGTGACATTTCC ATACTTCAGAAGAACTGGCTGGATTATGTGGTGACATTTCC < 41bp 0.608357758918841 0.870066967077943 NA NA prediction 0.523418416318204 Functional Gain - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66610821 chr15:66610820 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19443 0 0 1 0 1 DIS3L chr15:66610787 3'AG 66610787 Downstream 34bp 18191 chr20 61450582 61450582 1 + G T UCEC 61450583 + 61450563 61450603 41 CTCCTGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGG CTCCTGCACAGGGACCAAATGGGGCCCCAGGAAAGCCGGGG < 41bp 0.611217576957379 0.872922445592065 NA NA prediction 0.523409737269373 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450583 chr20:61450582 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_19444 0 0 1 0 2 COL9A3 chr20:61450574 3'AG 61450574 Downstream 9bp 18192 chr20 61450582 61450582 1 + G T UCEC 61450583 + 61450563 61450603 41 CTCCTGCACAGGGACCAAAGGGGGCCCCAGGAAAGCCGGGG CTCCTGCACAGGGACCAAATGGGGCCCCAGGAAAGCCGGGG < 41bp 0.611217576957379 0.872922445592065 NA NA prediction 0.523409737269373 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61450583 chr20:61450582 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_19444 0 0 1 0 2 COL9A3 chr20:61450645 5'GT 61450645 Upstream 64bp 18193 chr3 52811654 52811654 1 + G T THCA 52811655 + 52811635 52811675 41 GACGGTGCCATGGGGCCTCGGGGGCTGCTGTTGTGCATGTA GACGGTGCCATGGGGCCTCTGGGGCTGCTGTTGTGCATGTA < 41bp 0.437724351670132 0.761694476538886 NA NA prediction 0.523388953077771 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52811655 chr3:52811654 nonsynonymous SNV 0.063 0 20 hm7G_associated_SNPs_19447 0 0 0 0 1 ITIH1 chr3:52811748 5'GT 52811748 Upstream 95bp 18194 chr10 7780676 7780676 1 + G T UCEC 7780677 + 7780657 7780697 41 GATCTCCATGCTGGCACAAGGATCTCAGGTGCTAGAGTCCA GATCTCCATGCTGGCACAATGATCTCAGGTGCTAGAGTCCA < 41bp 0.596460994313444 0.858145013060868 NA NA prediction 0.52336803749485 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7780677 chr10:7780676 stopgain 0.005 0 20 hm7G_associated_SNPs_19450 0 0 1 0 2 ITIH2 chr10:7780584 3'AG 7780584 Downstream 93bp 18195 chr10 7780676 7780676 1 + G T UCEC 7780677 + 7780657 7780697 41 GATCTCCATGCTGGCACAAGGATCTCAGGTGCTAGAGTCCA GATCTCCATGCTGGCACAATGATCTCAGGTGCTAGAGTCCA < 41bp 0.596460994313444 0.858145013060868 NA NA prediction 0.52336803749485 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7780677 chr10:7780676 stopgain 0.005 0 20 hm7G_associated_SNPs_19450 0 0 1 0 2 ITIH2 chr10:7780721 5'GT 7780721 Upstream 46bp 18196 chr4 158074127 158074127 1 + G T LUAD 158074128 + 158074108 158074148 41 TAAAAAGAATACTGTGAATGGAACAGGGACTCCTGTTCATA TAAAAAGAATACTGTGAATTGAACAGGGACTCCTGTTCATA < 41bp 0.584894073333524 0.8465742881256 NA NA prediction 0.523360429584153 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:158074128 chr4:158074127 stopgain 0.992 0 20 hm7G_associated_SNPs_19451 0 0 0 0 1 GLRB chr4:158074162 5'GT 158074162 Upstream 36bp 18197 chr6 100055033 100055033 1 + G T SKCM 100055034 + 100055014 100055054 41 AGTACCTGTCAGACCGCAGGGAGCCCGGGCCTAAGAAAAAG AGTACCTGTCAGACCGCAGTGAGCCCGGGCCTAAGAAAAAG < 41bp 0.432518737274874 0.761678616716521 NA NA prediction 0.523357233433043 Functional Gain - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100055034 chr6:100055033 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_19452 0 0 0 0 1 PRDM13 chr6:100055054 5'GT 100055054 Upstream 22bp 18198 chr16 89249983 89249983 1 + G T UCEC 89249984 + 89249964 89250004 41 GTTTGCCCTGGACCTGGGAGGATCCACCCTGGAGGACCCCA GTTTGCCCTGGACCTGGGATGATCCACCCTGGAGGACCCCA < 41bp 0.61593425981829 0.877611992595427 NA NA prediction 0.523355465554274 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89249984 chr16:89249983 stopgain 0.672 1 20 hm7G_associated_SNPs_19453 0 0 0 0 1 CDH15 chr16:89249956 3'AG 89249956 Downstream 28bp 18199 chr6 12292655 12292655 1 + G T COAD 12292656 + 12292636 12292676 41 CCACCCTGGCGGCTCCGCCGGTCCAAGCGCTGCTCCTGCTC CCACCCTGGCGGCTCCGCCTGTCCAAGCGCTGCTCCTGCTC < 41bp 0.42117460897042 0.761669998920485 NA NA prediction 0.523339997840971 Functional Gain - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12292656 chr6:12292655 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_19454 0 0 0 0 3 EDN1 chr6:12292574 3'AG 12292574 Downstream 82bp 18200 chr6 12292655 12292655 1 + G T COAD 12292656 + 12292636 12292676 41 CCACCCTGGCGGCTCCGCCGGTCCAAGCGCTGCTCCTGCTC CCACCCTGGCGGCTCCGCCTGTCCAAGCGCTGCTCCTGCTC < 41bp 0.42117460897042 0.761669998920485 NA NA prediction 0.523339997840971 Functional Gain - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12292656 chr6:12292655 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_19454 0 0 0 0 3 EDN1 chr6:12292577 3'AG 12292577 Downstream 79bp 18201 chr6 12292655 12292655 1 + G T COAD 12292656 + 12292636 12292676 41 CCACCCTGGCGGCTCCGCCGGTCCAAGCGCTGCTCCTGCTC CCACCCTGGCGGCTCCGCCTGTCCAAGCGCTGCTCCTGCTC < 41bp 0.42117460897042 0.761669998920485 NA NA prediction 0.523339997840971 Functional Gain - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12292656 chr6:12292655 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_19454 0 0 0 0 3 EDN1 chr6:12292742 5'GT 12292742 Upstream 88bp 18202 chr6 36979535 36979535 1 + G T COAD 36979536 + 36979516 36979556 41 GCAGCAAGGCCTTCCCAGAGGATGTGGTCAGGGTCATCTTC GCAGCAAGGCCTTCCCAGATGATGTGGTCAGGGTCATCTTC < 41bp 0.455012723619958 0.761633299652423 NA NA prediction 0.523266599304846 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36979536 chr6:36979535 nonsynonymous SNV 0.196 3 20 hm7G_associated_SNPs_19456 0 0 0 0 2 FGD2 chr6:36979482 3'AG 36979482 Downstream 54bp 18203 chr6 36979535 36979535 1 + G T COAD 36979536 + 36979516 36979556 41 GCAGCAAGGCCTTCCCAGAGGATGTGGTCAGGGTCATCTTC GCAGCAAGGCCTTCCCAGATGATGTGGTCAGGGTCATCTTC < 41bp 0.455012723619958 0.761633299652423 NA NA prediction 0.523266599304846 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36979536 chr6:36979535 nonsynonymous SNV 0.196 3 20 hm7G_associated_SNPs_19456 0 0 0 0 2 FGD2 chr6:36979630 5'GT 36979630 Upstream 96bp 18204 chr8 38095694 38095694 1 + G T UCEC 38095695 + 38095675 38095715 41 ACCAAGAACTGTGAAGAGAGGAGTTGAGAACATCTCTGTTG ACCAAGAACTGTGAAGAGATGAGTTGAGAACATCTCTGTTG < 41bp 0.444366860368124 0.761625269517397 NA NA prediction 0.523250539034794 Functional Gain - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095695 chr8:38095694 stopgain 0.998 1 20 hm7G_associated_SNPs_19460 0 0 1 0 2 DDHD2 chr8:38095607 3'AG 38095607 Downstream 88bp 18205 chr8 38095694 38095694 1 + G T UCEC 38095695 + 38095675 38095715 41 ACCAAGAACTGTGAAGAGAGGAGTTGAGAACATCTCTGTTG ACCAAGAACTGTGAAGAGATGAGTTGAGAACATCTCTGTTG < 41bp 0.444366860368124 0.761625269517397 NA NA prediction 0.523250539034794 Functional Gain - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095695 chr8:38095694 stopgain 0.998 1 20 hm7G_associated_SNPs_19460 0 0 1 0 2 DDHD2 chr8:38095727 5'GT 38095727 Upstream 34bp 18206 chr11 63997004 63997004 1 + G T UCEC 63997005 + 63996985 63997025 41 ACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAGGAATC ACCTGAGTGGGGGACCCGATGCCCACGAGTCTACAGGAATC < 41bp 0.610327728641527 0.871920624471526 NA NA prediction 0.523185791659998 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997005 chr11:63997004 nonsynonymous SNV 0.978 2 20 hm7G_associated_SNPs_19462 0 0 0 0 2 NUDT22 chr11:63996950 3'AG 63996950 Downstream 55bp 18207 chr11 63997004 63997004 1 + G T UCEC 63997005 + 63996985 63997025 41 ACCTGAGTGGGGGACCCGAGGCCCACGAGTCTACAGGAATC ACCTGAGTGGGGGACCCGATGCCCACGAGTCTACAGGAATC < 41bp 0.610327728641527 0.871920624471526 NA NA prediction 0.523185791659998 Functional Gain - NUDT22 ENSG00000149761 CDS Human protein_coding chr11:63997005 chr11:63997004 nonsynonymous SNV 0.978 2 20 hm7G_associated_SNPs_19462 0 0 0 0 2 NUDT22 chr11:63997043 5'GT 63997043 Upstream 40bp 18208 chr3 46621261 46621261 1 + G T LUAD 46621262 + 46621242 46621282 41 CAGAACCTGCTGCCTGAATGGGGGAACCTGCATGCTGGGGT CAGAACCTGCTGCCTGAATTGGGGAACCTGCATGCTGGGGT < 41bp 0.598215103271913 0.859807260892209 NA NA prediction 0.523184315240592 Functional Gain - TDGF1 ENSG00000241186 CDS Human protein_coding chr3:46621262 chr3:46621261 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19463 0 0 0 0 1 TDGF1 chr3:46621229 3'AG 46621229 Downstream 33bp 18209 chr16 30507518 30507518 1 + G T LUAD 30507519 + 30507499 30507539 41 ACAGACATCAACGGCGATGGGCTGGTAGACGTGGCTGTGGG ACAGACATCAACGGCGATGTGCTGGTAGACGTGGCTGTGGG < 41bp 0.611406154078225 0.872998165780236 NA NA prediction 0.523184023404023 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30507519 chr16:30507518 nonsynonymous SNV 0.562 2 20 hm7G_associated_SNPs_19464 0 0 0 0 1 ITGAL chr16:30507615 5'GT 30507615 Upstream 98bp 18210 chr1 87043680 87043680 1 + G T UCEC 87043681 + 87043661 87043701 41 AAAAGTTCGGGCTCATGGAGGAGCAAACACTGCCAGGCTAA AAAAGTTCGGGCTCATGGATGAGCAAACACTGCCAGGCTAA < 41bp 0.591902441392847 0.853493761119981 NA NA prediction 0.523182639454268 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87043681 chr1:87043680 stopgain 0.096 1 20 hm7G_associated_SNPs_19465 0 0 0 0 2 CLCA4 chr1:87043585 3'AG 87043585 Downstream 96bp 18211 chr1 87043680 87043680 1 + G T UCEC 87043681 + 87043661 87043701 41 AAAAGTTCGGGCTCATGGAGGAGCAAACACTGCCAGGCTAA AAAAGTTCGGGCTCATGGATGAGCAAACACTGCCAGGCTAA < 41bp 0.591902441392847 0.853493761119981 NA NA prediction 0.523182639454268 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87043681 chr1:87043680 stopgain 0.096 1 20 hm7G_associated_SNPs_19465 0 0 0 0 2 CLCA4 chr1:87043755 5'GT 87043755 Upstream 76bp 18212 chr16 67154014 67154014 1 + G T LUAD 67154015 + 67153995 67154035 41 GGTGTCTTGCTTTATTTCAGGAATGCCTCTGGCTCAGGCAG GGTGTCTTGCTTTATTTCATGAATGCCTCTGGCTCAGGCAG < 41bp 0.440281917840452 0.761566174023507 NA NA prediction 0.523132348047013 Functional Gain - C16orf70 ENSG00000125149 splicing Human protein_coding chr16:67154015 chr16:67154014 . 1.000 0 20 hm7G_associated_SNPs_19467 0 0 1 0 1 C16orf70 chr16:67154097 5'GT 67154097 Upstream 84bp 18213 chr14 31353767 31353767 1 - C A UCEC 31353766 - 31353746 31353786 41 CAAGTAAAATTCTATTTTGGGATGTTCACTGAGTGGAAGAA CAAGTAAAATTCTATTTTGTGATGTTCACTGAGTGGAAGAA < 41bp 0.564200150351326 0.825764526678626 NA NA prediction 0.5231287526546 Functional Gain - COCH ENSG00000100473 CDS Human antisense chr14:31353766 chr14:31353767 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19468 0 0 0 0 1 LOC100506071 chr14:31353716 5'GT 31353716 Upstream 52bp 18214 chr10 88416016 88416016 1 + G T SARC 88416017 + 88415997 88416037 41 TCTTGCTGGTGGGACTCACGGGGATGCTGGGCAACCTGACG TCTTGCTGGTGGGACTCACTGGGATGCTGGGCAACCTGACG < 41bp 0.614804152539311 0.876328819248548 NA NA prediction 0.523049333418474 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88416017 chr10:88416016 synonymous SNV . 0 20 hm7G_associated_SNPs_19469 0 0 0 0 1 OPN4 chr10:88416057 5'GT 88416057 Upstream 42bp 18215 chr1 159277609 159277609 1 + G T UCEC 159277610 + 159277590 159277630 41 TCTGTTTGCTGTGGACACAGGATTATTTATCTCAACTCAGC TCTGTTTGCTGTGGACACATGATTATTTATCTCAACTCAGC < 41bp 0.547499670689167 0.80900821872993 NA NA prediction 0.523017096081524 Functional Gain - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159277610 chr1:159277609 stopgain 0.266 0 20 hm7G_associated_SNPs_19471 0 0 0 0 1 FCER1A chr1:159277538 3'AG 159277538 Downstream 72bp 18216 chr16 602903 602903 1 + G T BRCA 602904 + 602884 602924 41 TACTACCTGACACACGGTTGGGCGGGGCTCATCGTGGTGGT TACTACCTGACACACGGTTTGGCGGGGCTCATCGTGGTGGT < 41bp 0.605565129101257 0.8670736144891 NA NA prediction 0.523016970775687 Functional Gain - CAPN15 ENSG00000103326 CDS Human protein_coding chr16:602904 chr16:602903 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_19472 0 0 1 0 1 CAPN15 chr16:602863 3'AG 602863 Downstream 41bp 18217 chr5 5318252 5318252 1 + G T HNSC 5318253 + 5318233 5318273 41 TGTTGCTCTCACAGTGCACGGCCAGCTGTGGGGGAGGCGTT TGTTGCTCTCACAGTGCACTGCCAGCTGTGGGGGAGGCGTT < 41bp 0.61169393538759 0.873201143898244 NA NA prediction 0.523014417021308 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5318253 chr5:5318252 synonymous SNV . 0 20 hm7G_associated_SNPs_19473 0 0 0 0 1 ADAMTS16 chr5:5318247 3'AG 5318247 Downstream 6bp 18218 chr2 132290465 132290465 1 + G T PRAD 132290466 + 132290446 132290486 41 CTCAAGTCCCTCCTGGAAGGGAGCCAGAGGCCCCAGGCAGC CTCAAGTCCCTCCTGGAAGTGAGCCAGAGGCCCCAGGCAGC < 41bp 0.604436646013234 0.865928241858713 NA NA prediction 0.522983191690958 Functional Gain - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290466 chr2:132290465 stopgain 0.971 1 20 hm7G_associated_SNPs_19476 0 0 0 0 2 CCDC74A chr2:132290437 3'AG 132290437 Downstream 29bp 18219 chr2 132290465 132290465 1 + G T PRAD 132290466 + 132290446 132290486 41 CTCAAGTCCCTCCTGGAAGGGAGCCAGAGGCCCCAGGCAGC CTCAAGTCCCTCCTGGAAGTGAGCCAGAGGCCCCAGGCAGC < 41bp 0.604436646013234 0.865928241858713 NA NA prediction 0.522983191690958 Functional Gain - CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290466 chr2:132290465 stopgain 0.971 1 20 hm7G_associated_SNPs_19476 0 0 0 0 2 CCDC74A chr2:132290510 5'GT 132290510 Upstream 46bp 18220 chr9 109734478 109734478 1 + G T UCEC 109734479 + 109734459 109734499 41 GGCTACATCCAGAGCATCAGGCGTCATTACCGGGACAAGCA GGCTACATCCAGAGCATCATGCGTCATTACCGGGACAAGCA < 41bp 0.423808462101114 0.761453597477126 NA NA prediction 0.522907194954251 Functional Gain - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109734479 chr9:109734478 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19477 0 0 0 0 1 ZNF462 chr9:109734553 5'GT 109734553 Upstream 76bp 18221 chr8 39781008 39781008 1 + G T COAD 39781009 + 39780989 39781029 41 TAATTCCTACTGTATTCAAGGCAATGCAAATGCAAGAACGG TAATTCCTACTGTATTCAATGCAATGCAAATGCAAGAACGG < 41bp 0.592735564186877 0.854185841564695 NA NA prediction 0.522900554755636 Functional Gain - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39781009 chr8:39781008 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_19478 0 0 0 3 1 IDO1 chr8:39780988 3'AG 39780988 Downstream 21bp 18222 chr6 126073018 126073018 1 + G T UCEC 126073019 + 126072999 126073039 41 ATTATGGCAAGAAAGAAAAGGAGAGGGGTATGTGATTTTTC ATTATGGCAAGAAAGAAAATGAGAGGGGTATGTGATTTTTC < 41bp 0.579010648766118 0.840453737239229 NA NA prediction 0.522886176946223 Functional Gain - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126073019 chr6:126073018 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19481 0 0 0 0 2 HEY2 chr6:126072947 3'AG 126072947 Downstream 72bp 18223 chr6 126073018 126073018 1 + G T UCEC 126073019 + 126072999 126073039 41 ATTATGGCAAGAAAGAAAAGGAGAGGGGTATGTGATTTTTC ATTATGGCAAGAAAGAAAATGAGAGGGGTATGTGATTTTTC < 41bp 0.579010648766118 0.840453737239229 NA NA prediction 0.522886176946223 Functional Gain - HEY2 ENSG00000135547 CDS Human protein_coding chr6:126073019 chr6:126073018 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19481 0 0 0 0 2 HEY2 chr6:126073025 5'GT 126073025 Upstream 8bp 18224 chr2 155711324 155711324 1 + G T STAD 155711325 + 155711305 155711345 41 CTGTAATTTCCTTAGAAGAGGGATTCTTTAAAGTTGATTAC CTGTAATTTCCTTAGAAGATGGATTCTTTAAAGTTGATTAC < 41bp 0.455935434828976 0.761430779841493 NA NA prediction 0.522861559682986 Functional Gain - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155711325 chr2:155711324 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_19484 0 0 0 1 1 KCNJ3 chr2:155711239 3'AG 155711239 Downstream 86bp 18225 chr8 75929606 75929606 1 + G T LUSC 75929607 + 75929587 75929627 41 TGGTATAATAGACAATGATGGTGGCTGGGTAGATATCACTA TGGTATAATAGACAATGATTGTGGCTGGGTAGATATCACTA < 41bp 0.580415948209866 0.841841079401472 NA NA prediction 0.522850262383212 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75929607 chr8:75929606 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_19485 0 0 1 0 2 CRISPLD1 chr8:75929555 3'AG 75929555 Downstream 52bp 18226 chr8 75929606 75929606 1 + G T LUSC 75929607 + 75929587 75929627 41 TGGTATAATAGACAATGATGGTGGCTGGGTAGATATCACTA TGGTATAATAGACAATGATTGTGGCTGGGTAGATATCACTA < 41bp 0.580415948209866 0.841841079401472 NA NA prediction 0.522850262383212 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75929607 chr8:75929606 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_19485 0 0 1 0 2 CRISPLD1 chr8:75929685 5'GT 75929685 Upstream 80bp 18227 chr4 111430927 111430927 1 + G T GBM 111430928 + 111430908 111430948 41 CCTCATCAAACCAACAGAGGGTGGCCACTGTGGTTGCCCAT CCTCATCAAACCAACAGAGTGTGGCCACTGTGGTTGCCCAT < 41bp 0.45286621826129 0.761386868040887 NA NA prediction 0.522773736081774 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111430928 chr4:111430927 nonsynonymous SNV 0.840 3 20 hm7G_associated_SNPs_19486 0 0 0 0 1 ENPEP chr4:111430963 5'GT 111430963 Upstream 37bp 18228 chr9 69420374 69420374 1 + G T LUSC 69420375 + 69420355 69420395 41 AACCCAACAAAGAAAGATTGGGAAAACGTATCCTCAGCAAT AACCCAACAAAGAAAGATTTGGAAAACGTATCCTCAGCAAT < 41bp 0.443704980840927 0.761379266008859 NA NA prediction 0.522758532017719 Functional Gain - ANKRD20A4 ENSG00000172014 CDS Human protein_coding chr9:69420375 chr9:69420374 nonsynonymous SNV 0.031 3 20 hm7G_associated_SNPs_19488 0 0 0 0 1 ANKRD20A4 chr9:69420426 5'GT 69420426 Upstream 53bp 18229 chr4 88967893 88967893 1 + G T LUAD 88967894 + 88967874 88967914 41 CAACTTTTGATTTCTTCCTGGCAGCCTGTGAGATTATCTTT CAACTTTTGATTTCTTCCTTGCAGCCTGTGAGATTATCTTT < 41bp 0.434979939805555 0.761353731583968 NA NA prediction 0.522707463167936 Functional Gain - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88967894 chr4:88967893 synonymous SNV . 0 20 hm7G_associated_SNPs_19489 0 0 1 0 1 PKD2 chr4:88967794 3'AG 88967794 Downstream 100bp 18230 chr11 34156814 34156814 1 + G T BLCA 34156815 + 34156795 34156835 41 AGGTCCTTGAGACACCACAGGAAATTCACACCGTAAGCAGC AGGTCCTTGAGACACCACATGAAATTCACACCGTAAGCAGC < 41bp 0.425056603685016 0.761338794303512 NA NA prediction 0.522677588607023 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34156815 chr11:34156814 nonsynonymous SNV 0.128 0 20 hm7G_associated_SNPs_19492 0 0 1 0 2 NAT10 chr11:34156722 3'AG 34156722 Downstream 93bp 18231 chr11 34156814 34156814 1 + G T BLCA 34156815 + 34156795 34156835 41 AGGTCCTTGAGACACCACAGGAAATTCACACCGTAAGCAGC AGGTCCTTGAGACACCACATGAAATTCACACCGTAAGCAGC < 41bp 0.425056603685016 0.761338794303512 NA NA prediction 0.522677588607023 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34156815 chr11:34156814 nonsynonymous SNV 0.128 0 20 hm7G_associated_SNPs_19492 0 0 1 0 2 NAT10 chr11:34156838 5'GT 34156838 Upstream 25bp 18232 chr11 111853203 111853203 1 + G T UCEC 111853204 + 111853184 111853224 41 AGCAAAGAAAATGATATCAGGACTACAGGTAGCTCTCTCCC AGCAAAGAAAATGATATCATGACTACAGGTAGCTCTCTCCC < 41bp 0.441956155242169 0.76133330487456 NA NA prediction 0.52266660974912 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111853204 chr11:111853203 stopgain 0.996 0 20 hm7G_associated_SNPs_19493 0 0 1 0 2 DIXDC1;DIXDC1 chr11:111853107 3'AG 111853107 Downstream 97bp 18233 chr11 111853203 111853203 1 + G T UCEC 111853204 + 111853184 111853224 41 AGCAAAGAAAATGATATCAGGACTACAGGTAGCTCTCTCCC AGCAAAGAAAATGATATCATGACTACAGGTAGCTCTCTCCC < 41bp 0.441956155242169 0.76133330487456 NA NA prediction 0.52266660974912 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111853204 chr11:111853203 stopgain 0.996 0 20 hm7G_associated_SNPs_19493 0 0 1 0 2 DIXDC1 chr11:111853211 5'GT 111853211 Upstream 9bp 18234 chr15 49462522 49462522 1 + G T LIHC 49462523 + 49462503 49462543 41 GAAGGATCTAGCGAAATATGGCTACAGAGAGCCCTGCTACG GAAGGATCTAGCGAAATATTGCTACAGAGAGCCCTGCTACG < 41bp 0.442265785995469 0.761329524252291 NA NA prediction 0.522659048504581 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49462523 chr15:49462522 nonsynonymous SNV 0.955 2 20 hm7G_associated_SNPs_19494 0 0 0 0 2 GALK2 chr15:49462555 5'GT 49462555 Upstream 34bp 18235 chr15 49462522 49462522 1 + G T LIHC 49462523 + 49462503 49462543 41 GAAGGATCTAGCGAAATATGGCTACAGAGAGCCCTGCTACG GAAGGATCTAGCGAAATATTGCTACAGAGAGCCCTGCTACG < 41bp 0.442265785995469 0.761329524252291 NA NA prediction 0.522659048504581 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49462523 chr15:49462522 nonsynonymous SNV 0.955 2 20 hm7G_associated_SNPs_19494 0 0 0 0 2 GALK2 chr15:49462572 5'GT 49462572 Upstream 51bp 18236 chr16 57714214 57714214 1 + G T LUAD 57714215 + 57714195 57714235 41 CTTCTGAGGGCTGCTCCACGGAGGTCAGACCTGAGGGGACC CTTCTGAGGGCTGCTCCACTGAGGTCAGACCTGAGGGGACC < 41bp 0.422080572833 0.761322883584486 NA NA prediction 0.522645767168973 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714215 chr16:57714214 synonymous SNV . 0 20 hm7G_associated_SNPs_19495 0 0 0 0 2 ADGRG3 chr16:57714177 3'AG 57714177 Downstream 38bp 18237 chr16 57714214 57714214 1 + G T LUAD 57714215 + 57714195 57714235 41 CTTCTGAGGGCTGCTCCACGGAGGTCAGACCTGAGGGGACC CTTCTGAGGGCTGCTCCACTGAGGTCAGACCTGAGGGGACC < 41bp 0.422080572833 0.761322883584486 NA NA prediction 0.522645767168973 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57714215 chr16:57714214 synonymous SNV . 0 20 hm7G_associated_SNPs_19495 0 0 0 0 2 ADGRG3 chr16:57714277 5'GT 57714277 Upstream 64bp 18238 chr19 34900105 34900105 1 + G T LIHC 34900106 + 34900086 34900126 41 AGCTGAGGACTGGTGTGAAGGTGCTGATGACTGGGGAAGTG AGCTGAGGACTGGTGTGAATGTGCTGATGACTGGGGAAGTG < 41bp 0.588009410722075 0.849311645279162 NA NA prediction 0.522604469114173 Functional Gain - PDCD2L ENSG00000126249;ENSG00000266953 CDS Human other chr19:34900106 chr19:34900105 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_19497 0 0 1 0 1 PDCD2L chr19:34900066 3'AG 34900066 Downstream 40bp 18239 chr4 69327584 69327584 1 + G T UCEC 69327585 + 69327565 69327605 41 GAGTTTGTTGGGAACCCTGGGTTATCGGCCTCGTCATCTTC GAGTTTGTTGGGAACCCTGTGTTATCGGCCTCGTCATCTTC < 41bp 0.434724990836291 0.761301677648867 NA NA prediction 0.522603355297733 Functional Gain - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69327585 chr4:69327584 nonsynonymous SNV 0.921 4 20 hm7G_associated_SNPs_19498 0 0 0 0 2 TMPRSS11E chr4:69327539 3'AG 69327539 Downstream 46bp 18240 chr4 69327584 69327584 1 + G T UCEC 69327585 + 69327565 69327605 41 GAGTTTGTTGGGAACCCTGGGTTATCGGCCTCGTCATCTTC GAGTTTGTTGGGAACCCTGTGTTATCGGCCTCGTCATCTTC < 41bp 0.434724990836291 0.761301677648867 NA NA prediction 0.522603355297733 Functional Gain - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69327585 chr4:69327584 nonsynonymous SNV 0.921 4 20 hm7G_associated_SNPs_19498 0 0 0 0 2 TMPRSS11E chr4:69327663 5'GT 69327663 Upstream 80bp 18241 chr18 28711727 28711727 1 - C A LUSC 28711726 - 28711706 28711746 41 TGGTACTGTTGGTGGCCAGGGAATCAAAACACAGCAAAGTT TGGTACTGTTGGTGGCCAGTGAATCAAAACACAGCAAAGTT < 41bp 0.588543630588406 0.849833294505869 NA NA prediction 0.522579327834927 Functional Gain - DSC1 ENSG00000134765 CDS Human protein_coding chr18:28711726 chr18:28711727 stopgain 0.999 1 20 hm7G_associated_SNPs_19499 0 0 0 0 1 DSC1 chr18:28711805 3'AG 28711805 Downstream 79bp 18242 chr17 57651252 57651252 1 + G T UCEC 57651253 + 57651233 57651273 41 ATATTTGATATACCTGGAAGGCTTTATCCAGTCAGAGAGAA ATATTTGATATACCTGGAATGCTTTATCCAGTCAGAGAGAA < 41bp 0.601868086352382 0.86315430105308 NA NA prediction 0.522572429401397 Functional Gain - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57651253 chr17:57651252 nonsynonymous SNV 0.960 3 20 hm7G_associated_SNPs_19500 0 0 0 0 1 DHX40 chr17:57651328 5'GT 57651328 Upstream 77bp 18243 chr20 30729666 30729666 1 + G T LUSC 30729667 + 30729647 30729687 41 AGATGTGCAGTTTGAACACGGCTACCGGCTCGGCTTCACAG AGATGTGCAGTTTGAACACTGCTACCGGCTCGGCTTCACAG < 41bp 0.61677360586735 0.878045862328713 NA NA prediction 0.522544512922727 Functional Gain - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30729667 chr20:30729666 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19501 0 0 1 0 2 TM9SF4 chr20:30729569 3'AG 30729569 Downstream 98bp 18244 chr20 30729666 30729666 1 + G T LUSC 30729667 + 30729647 30729687 41 AGATGTGCAGTTTGAACACGGCTACCGGCTCGGCTTCACAG AGATGTGCAGTTTGAACACTGCTACCGGCTCGGCTTCACAG < 41bp 0.61677360586735 0.878045862328713 NA NA prediction 0.522544512922727 Functional Gain - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30729667 chr20:30729666 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19501 0 0 1 0 2 TM9SF4 chr20:30729698 5'GT 30729698 Upstream 33bp 18245 chr3 44943299 44943299 1 + G T STAD 44943300 + 44943280 44943320 41 TTCAGTGCTGAGAGCGTTGGGCATCCCAGCACGCAGTGTGA TTCAGTGCTGAGAGCGTTGTGCATCCCAGCACGCAGTGTGA < 41bp 0.595332962946355 0.856595568309151 NA NA prediction 0.522525210725593 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44943300 chr3:44943299 nonsynonymous SNV 0.014 4 20 hm7G_associated_SNPs_19502 0 0 0 0 1 TGM4 chr3:44943285 3'AG 44943285 Downstream 15bp 18246 chr5 54403630 54403630 1 + G T LUAD 54403631 + 54403611 54403651 41 TCTGTTCTCAGGAACAAAAGGTCCCAGGTCATTCTTGGGGC TCTGTTCTCAGGAACAAAATGTCCCAGGTCATTCTTGGGGC < 41bp 0.564977487566636 0.826227959247438 NA NA prediction 0.522500943361604 Functional Gain - GZMA ENSG00000145649 CDS Human protein_coding chr5:54403631 chr5:54403630 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_19504 0 0 0 0 1 GZMA chr5:54403622 3'AG 54403622 Downstream 9bp 18247 chr19 36113627 36113627 1 + G T rs201392523 36113628 + 36113608 36113648 41 CTGAGCTGCAGGGGATCGTGGGGGACTGGTGAGAGGGGAAC CTGAGCTGCAGGGGATCGTTGGGGACTGGTGAGAGGGGAAC < 41bp 0.608472207681943 0.869714709645704 NA NA prediction 0.522485003927522 Functional Gain - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36113628 chr19:36113627 synonymous SNV . 0 20 hm7G_associated_SNPs_19505 0 0 1 0 1 HAUS5 chr19:36113635 5'GT 36113635 Upstream 9bp 18248 chr6 133834083 133834083 1 + G T LUAD 133834084 + 133834064 133834104 41 AAACCTTTGTTTGCCAACAGGTGTAAGAGGAGGGGTTGACT AAACCTTTGTTTGCCAACATGTGTAAGAGGAGGGGTTGACT < 41bp 0.580088402230715 0.841330720001299 NA NA prediction 0.522484635541168 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133834084 chr6:133834083 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19506 0 0 1 0 2 EYA4 chr6:133834016 3'AG 133834016 Downstream 68bp 18249 chr6 133834083 133834083 1 + G T LUAD 133834084 + 133834064 133834104 41 AAACCTTTGTTTGCCAACAGGTGTAAGAGGAGGGGTTGACT AAACCTTTGTTTGCCAACATGTGTAAGAGGAGGGGTTGACT < 41bp 0.580088402230715 0.841330720001299 NA NA prediction 0.522484635541168 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133834084 chr6:133834083 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19506 0 0 1 0 2 EYA4 chr6:133834176 5'GT 133834176 Upstream 94bp 18250 chr2 31457667 31457667 1 + G T UCEC 31457668 + 31457648 31457688 41 ACTTCGACAACAAGCCCATGGTTCTGCTGGTGGGCCAGTAC ACTTCGACAACAAGCCCATTGTTCTGCTGGTGGGCCAGTAC < 41bp 0.606435994791116 0.867676651615276 NA NA prediction 0.52248131364832 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31457668 chr2:31457667 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19507 0 0 0 0 1 EHD3 chr2:31457714 5'GT 31457714 Upstream 48bp 18251 chr2 219538400 219538400 1 + G T PAAD 219538401 + 219538381 219538421 41 CGCTCAGAGAAGGAGCTGAGGAATTTGCAACGAGAGATTGA CGCTCAGAGAAGGAGCTGATGAATTTGCAACGAGAGATTGA < 41bp 0.607919000479534 0.869140941686042 NA NA prediction 0.522443882413015 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219538401 chr2:219538400 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_19508 0 0 1 0 2 STK36 chr2:219538348 3'AG 219538348 Downstream 53bp 18252 chr2 219538400 219538400 1 + G T PAAD 219538401 + 219538381 219538421 41 CGCTCAGAGAAGGAGCTGAGGAATTTGCAACGAGAGATTGA CGCTCAGAGAAGGAGCTGATGAATTTGCAACGAGAGATTGA < 41bp 0.607919000479534 0.869140941686042 NA NA prediction 0.522443882413015 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219538401 chr2:219538400 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_19508 0 0 1 0 2 STK36 chr2:219538488 5'GT 219538488 Upstream 89bp 18253 chr5 67588928 67588928 1 + G T LUAD 67588929 + 67588909 67588949 41 GTTTTGTGTTTTCATTTCAGGGAAGAAGTGAATGAAAAACT GTTTTGTGTTTTCATTTCATGGAAGAAGTGAATGAAAAACT < 41bp 0.452574580634922 0.761220435134575 NA NA prediction 0.522440870269151 Functional Gain - PIK3R1 ENSG00000145675 splicing Human protein_coding chr5:67588929 chr5:67588928 . 0.996 0 20 hm7G_associated_SNPs_19510 0 0 0 0 1 PIK3R1 chr5:67589027 5'GT 67589027 Upstream 100bp 18254 chr10 43678730 43678730 1 + G T UCEC 43678731 + 43678711 43678751 41 GGAAGTGAAAGGTTGGGGTGGAGAAGATGTTCATCTTTATC GGAAGTGAAAGGTTGGGGTTGAGAAGATGTTCATCTTTATC < 41bp 0.468353139336054 0.761193528290843 NA NA prediction 0.522387056581685 Functional Gain - CSGALNACT2 ENSG00000169826 CDS Human protein_coding chr10:43678731 chr10:43678730 stopgain 1.000 1 20 hm7G_associated_SNPs_19513 0 0 0 0 1 CSGALNACT2 chr10:43678698 3'AG 43678698 Downstream 33bp 18255 chr14 102391575 102391575 1 + G T UCEC 102391576 + 102391556 102391596 41 GCCTTGGAAGCTCACTGCAGGGCCGATGAGCTGGCCTCCCA GCCTTGGAAGCTCACTGCATGGCCGATGAGCTGGCCTCCCA < 41bp 0.584666125333001 0.845852927011426 NA NA prediction 0.522373603356852 Functional Gain - PPP2R5C ENSG00000078304 CDS Human protein_coding chr14:102391576 chr14:102391575 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_19515 0 0 1 0 1 PPP2R5C chr14:102391478 3'AG 102391478 Downstream 98bp 18256 chr22 41075734 41075734 1 + G T LIHC 41075735 + 41075715 41075755 41 GCCCCGATAACCTCACTTCGGCAGGTGAGTTGACTGGGAGC GCCCCGATAACCTCACTTCTGCAGGTGAGTTGACTGGGAGC < 41bp 0.600925551779094 0.862111024019826 NA NA prediction 0.522370944481463 Functional Gain - MCHR1 ENSG00000128285 CDS Human protein_coding chr22:41075735 chr22:41075734 synonymous SNV . 0 20 hm7G_associated_SNPs_19516 0 0 0 0 1 MCHR1 chr22:41075738 5'GT 41075738 Upstream 5bp 18257 chr7 121513610 121513610 1 + G T COAD 121513611 + 121513591 121513631 41 TCCTCTGTGTTTGCCGCCTGGGTGAGTGAGAAGAGCTCGGT TCCTCTGTGTTTGCCGCCTTGGTGAGTGAGAAGAGCTCGGT < 41bp 0.459236962632936 0.761184324245121 NA NA prediction 0.522368648490242 Functional Gain - PTPRZ1 ENSG00000106278 CDS Human protein_coding chr7:121513611 chr7:121513610 synonymous SNV . 0 20 hm7G_associated_SNPs_19517 0 0 0 0 1 PTPRZ1 chr7:121513611 5'GT 121513611 Upstream 2bp 18258 chr3 40442407 40442407 1 + G T UCEC 40442408 + 40442388 40442428 41 GGTATTGTGCTGGATGCCGGGTCTTCAAGAACCACAGTCTA GGTATTGTGCTGGATGCCGTGTCTTCAAGAACCACAGTCTA < 41bp 0.436942583841674 0.761171912817578 NA NA prediction 0.522343825635155 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40442408 chr3:40442407 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_19520 0 0 0 0 2 ENTPD3 chr3:40442385 3'AG 40442385 Downstream 23bp 18259 chr3 40442407 40442407 1 + G T UCEC 40442408 + 40442388 40442428 41 GGTATTGTGCTGGATGCCGGGTCTTCAAGAACCACAGTCTA GGTATTGTGCTGGATGCCGTGTCTTCAAGAACCACAGTCTA < 41bp 0.436942583841674 0.761171912817578 NA NA prediction 0.522343825635155 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40442408 chr3:40442407 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_19520 0 0 0 0 2 ENTPD3 chr3:40442502 5'GT 40442502 Upstream 96bp 18260 chr16 68772296 68772296 1 + G T UCEC 68772297 + 68772277 68772317 41 CCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGGTG CCGGCGCCACCTGGAGAGATGCCGCGTCCTGGGCAGAGGTG < 41bp 0.607449418105416 0.868611372932315 NA NA prediction 0.522323909653797 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68772297 chr16:68772296 nonsynonymous SNV 0.851 1 20 hm7G_associated_SNPs_19521 0 0 0 0 2 CDH1 chr16:68772200 3'AG 68772200 Downstream 97bp 18261 chr16 68772296 68772296 1 + G T UCEC 68772297 + 68772277 68772317 41 CCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGGTG CCGGCGCCACCTGGAGAGATGCCGCGTCCTGGGCAGAGGTG < 41bp 0.607449418105416 0.868611372932315 NA NA prediction 0.522323909653797 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68772297 chr16:68772296 nonsynonymous SNV 0.851 1 20 hm7G_associated_SNPs_19521 0 0 0 0 2 CDH1 chr16:68772314 5'GT 68772314 Upstream 19bp 18262 chr22 22989520 22989520 1 + G T rs141781442 22989521 + 22989501 22989541 41 ACGGCCAGGTCCGGATGGTGGTGGGAGCTGCTGGGGGCACA ACGGCCAGGTCCGGATGGTTGTGGGAGCTGCTGGGGGCACA < 41bp 0.593718121172968 0.854859116201967 NA NA prediction 0.522281990057999 Functional Gain - GGTLC2 ENSG00000100121 CDS Human protein_coding chr22:22989521 chr22:22989520 synonymous SNV . 0 20 hm7G_associated_SNPs_19522 0 0 0 0 1 GGTLC2 chr22:22989453 3'AG 22989453 Downstream 68bp 18263 chr12 110345459 110345459 1 + G T UCEC 110345460 + 110345440 110345480 41 AGGACAAGCTCCAGGCCGAGGCACTGCTGCAACAGATGGAG AGGACAAGCTCCAGGCCGATGCACTGCTGCAACAGATGGAG < 41bp 0.405859391901972 0.761112482141937 NA NA prediction 0.522224964283875 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110345460 chr12:110345459 nonsynonymous SNV 0.114 2 20 hm7G_associated_SNPs_19524 0 0 1 0 1 TCHP chr12:110345504 5'GT 110345504 Upstream 46bp 18264 chr14 23944502 23944502 1 + G T LUAD 23944503 + 23944483 23944523 41 ATGATGCAGTTTTGAGACTGGTGGAGATTCGCACGGTATGA ATGATGCAGTTTTGAGACTTGTGGAGATTCGCACGGTATGA < 41bp 0.589101286058421 0.850203856749294 NA NA prediction 0.522205141381745 Functional Gain - NGDN ENSG00000129460 CDS Human protein_coding chr14:23944503 chr14:23944502 synonymous SNV . 0 20 hm7G_associated_SNPs_19525 0 0 1 0 1 NGDN chr14:23944517 5'GT 23944517 Upstream 16bp 18265 chr1 112298349 112298349 1 - C A COAD 112298348 - 112298328 112298368 41 CCTGAGGAAAGCCCCAAGAGGGAGGAGAGGAAAGATGAGGC CCTGAGGAAAGCCCCAAGATGGAGGAGAGGAAAGATGAGGC < 41bp 0.448064941469591 0.761101722055733 NA NA prediction 0.522203444111466 Functional Gain - DDX20;FAM212B ENSG00000064703;ENSG00000197852 UTR5 Human protein_coding chr1:112298348 chr1:112298349 . . 0 20 hm7G_associated_SNPs_19526 0 0 0 0 1 FAM212B chr1:112298323 5'GT 112298323 Upstream 27bp 18266 chr1 55457569 55457569 1 + G T UCEC 55457570 + 55457550 55457590 41 TGAGCTTCCCAGTGGCCGAGGGGCCCCCAACACCACCTGCA TGAGCTTCCCAGTGGCCGATGGGCCCCCAACACCACCTGCA < 41bp 0.43709783136988 0.7610999718852 NA NA prediction 0.522199943770401 Functional Gain - TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55457570 chr1:55457569 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_19528 0 0 0 0 1 TMEM61 chr1:55457509 3'AG 55457509 Downstream 61bp 18267 chr3 187088669 187088669 1 + G T COAD 187088670 + 187088650 187088690 41 ACTGGACATCCCAGGGTCAGGTGCGTATGAGGCTCTTTGGC ACTGGACATCCCAGGGTCATGTGCGTATGAGGCTCTTTGGC < 41bp 0.588290915434726 0.849363238312977 NA NA prediction 0.522144645756503 Functional Gain - RTP4 ENSG00000136514 CDS Human protein_coding chr3:187088670 chr3:187088669 nonsynonymous SNV 0.204 0 20 hm7G_associated_SNPs_19531 0 0 0 0 1 RTP4 chr3:187088576 3'AG 187088576 Downstream 94bp 18268 chr19 49971697 49971697 1 + G T THYM 49971698 + 49971678 49971718 41 CGCTGGGTGTGCTGGCTGTGGTGTGTCCGGACGAGTGGCCC CGCTGGGTGTGCTGGCTGTTGTGTGTCCGGACGAGTGGCCC < 41bp 0.423286029426628 0.761072263269501 NA NA prediction 0.522144526539002 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49971698 chr19:49971697 synonymous SNV . 0 20 hm7G_associated_SNPs_19532 0 0 1 0 1 ALDH16A1 chr19:49971638 3'AG 49971638 Downstream 60bp 18269 chr6 130407297 130407297 1 + G T UCEC 130407298 + 130407278 130407318 41 GTGGCAGAAACCTCCTCATGGATTCCAGAAAAAAATGAAGC GTGGCAGAAACCTCCTCATTGATTCCAGAAAAAAATGAAGC < 41bp 0.439183681095957 0.761069840921764 NA NA prediction 0.522139681843528 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130407298 chr6:130407297 stopgain 1.000 1 20 hm7G_associated_SNPs_19534 0 0 0 0 2 L3MBTL3 chr6:130407285 3'AG 130407285 Downstream 13bp 18270 chr6 130407297 130407297 1 + G T UCEC 130407298 + 130407278 130407318 41 GTGGCAGAAACCTCCTCATGGATTCCAGAAAAAAATGAAGC GTGGCAGAAACCTCCTCATTGATTCCAGAAAAAAATGAAGC < 41bp 0.439183681095957 0.761069840921764 NA NA prediction 0.522139681843528 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130407298 chr6:130407297 stopgain 1.000 1 20 hm7G_associated_SNPs_19534 0 0 0 0 2 L3MBTL3 chr6:130407395 5'GT 130407395 Upstream 99bp 18271 chr1 175046886 175046886 1 + G T LUAD 175046887 + 175046867 175046907 41 GTCCAGGACCTCCTGGCCCGGGTGAAGAAGCTGGAGGAAGA GTCCAGGACCTCCTGGCCCTGGTGAAGAAGCTGGAGGAAGA < 41bp 0.609308486749167 0.870375516070951 NA NA prediction 0.522134058643569 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175046887 chr1:175046886 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_19535 0 0 0 0 1 TNN chr1:175046963 5'GT 175046963 Upstream 78bp 18272 chr6 160577060 160577060 1 + G T UCEC 160577061 + 160577041 160577081 41 ACTTCTTCCAGAGACCAAGGGGGTCGCTTTGCCAGAGACCA ACTTCTTCCAGAGACCAAGTGGGTCGCTTTGCCAGAGACCA < 41bp 0.612422711733635 0.873469905067716 NA NA prediction 0.522094386668162 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160577061 chr6:160577060 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_19540 0 0 0 0 2 SLC22A1 chr6:160577007 3'AG 160577007 Downstream 54bp 18273 chr6 160577060 160577060 1 + G T UCEC 160577061 + 160577041 160577081 41 ACTTCTTCCAGAGACCAAGGGGGTCGCTTTGCCAGAGACCA ACTTCTTCCAGAGACCAAGTGGGTCGCTTTGCCAGAGACCA < 41bp 0.612422711733635 0.873469905067716 NA NA prediction 0.522094386668162 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160577061 chr6:160577060 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_19540 0 0 0 0 2 SLC22A1 chr6:160577106 5'GT 160577106 Upstream 47bp 18274 chr19 49964950 49964950 1 + G T LUAD 49964951 + 49964931 49964971 41 CCAGCTGGCGGGGGAGCTGGGCCCCTTCCCGGGAATCCTGA CCAGCTGGCGGGGGAGCTGTGCCCCTTCCCGGGAATCCTGA < 41bp 0.417201567276423 0.761018388697358 NA NA prediction 0.522036777394716 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49964951 chr19:49964950 nonsynonymous SNV 0.013 4 20 hm7G_associated_SNPs_19541 0 0 1 0 1 ALDH16A1 chr19:49964876 3'AG 49964876 Downstream 75bp 18275 chr11 44074213 44074213 1 + G T UCEC 44074214 + 44074194 44074234 41 GTCTCTCTGTGTTTCCAGAGGCCTTCCTGGTCCCTGCTCCC GTCTCTCTGTGTTTCCAGATGCCTTCCTGGTCCCTGCTCCC < 41bp 0.429966932797765 0.761004334318042 NA NA prediction 0.522008668636085 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44074214 chr11:44074213 nonsynonymous SNV 0.090 0 20 hm7G_associated_SNPs_19543 0 0 0 0 2 ACCSL chr11:44074212 3'AG 44074212 Downstream 2bp 18276 chr11 44074213 44074213 1 + G T UCEC 44074214 + 44074194 44074234 41 GTCTCTCTGTGTTTCCAGAGGCCTTCCTGGTCCCTGCTCCC GTCTCTCTGTGTTTCCAGATGCCTTCCTGGTCCCTGCTCCC < 41bp 0.429966932797765 0.761004334318042 NA NA prediction 0.522008668636085 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44074214 chr11:44074213 nonsynonymous SNV 0.090 0 20 hm7G_associated_SNPs_19543 0 0 0 0 2 ACCSL chr11:44074309 5'GT 44074309 Upstream 97bp 18277 chrX 140995914 140995914 1 + G T LUAD 140995915 + 140995895 140995935 41 CCTTGTTCACTTATACACTGGATGAAAAGGTGGACGAGTTG CCTTGTTCACTTATACACTTGATGAAAAGGTGGACGAGTTG < 41bp 0.581081651814726 0.842056951250998 NA NA prediction 0.521950598872545 Functional Gain - MAGEC1 ENSG00000155495 CDS Human protein_coding chrX:140995915 chrX:140995914 synonymous SNV . 0 20 hm7G_associated_SNPs_19545 0 0 0 0 1 MAGEC1 chrX:140995876 3'AG 140995876 Downstream 39bp 18278 chr9 133493204 133493204 1 + G T LUAD 133493205 + 133493185 133493225 41 AGCGGACAGGGGTGAAGATGGTCATGATCCAGGATGGCCCA AGCGGACAGGGGTGAAGATTGTCATGATCCAGGATGGCCCA < 41bp 0.61065850353047 0.871609641500466 NA NA prediction 0.521902275939992 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133493205 chr9:133493204 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19546 0 0 1 0 2 FUBP3 chr9:133493184 3'AG 133493184 Downstream 21bp 18279 chr9 133493204 133493204 1 + G T LUAD 133493205 + 133493185 133493225 41 AGCGGACAGGGGTGAAGATGGTCATGATCCAGGATGGCCCA AGCGGACAGGGGTGAAGATTGTCATGATCCAGGATGGCCCA < 41bp 0.61065850353047 0.871609641500466 NA NA prediction 0.521902275939992 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133493205 chr9:133493204 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19546 0 0 1 0 2 FUBP3 chr9:133493282 5'GT 133493282 Upstream 79bp 18280 chr1 100960422 100960422 1 + G T LUAD 100960423 + 100960403 100960443 41 GAAAAATGGTATAACCCAGGGAGACAAACTACGTGCCTTAA GAAAAATGGTATAACCCAGTGAGACAAACTACGTGCCTTAA < 41bp 0.4533615828809 0.760910226174789 NA NA prediction 0.521820452349579 Functional Gain - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100960423 chr1:100960422 stopgain 0.995 1 20 hm7G_associated_SNPs_19549 0 0 1 1 2 CDC14A chr1:100960374 3'AG 100960374 Downstream 49bp 18281 chr1 100960422 100960422 1 + G T LUAD 100960423 + 100960403 100960443 41 GAAAAATGGTATAACCCAGGGAGACAAACTACGTGCCTTAA GAAAAATGGTATAACCCAGTGAGACAAACTACGTGCCTTAA < 41bp 0.4533615828809 0.760910226174789 NA NA prediction 0.521820452349579 Functional Gain - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100960423 chr1:100960422 stopgain 0.995 1 20 hm7G_associated_SNPs_19549 0 0 1 1 2 CDC14A chr1:100960486 5'GT 100960486 Upstream 65bp 18282 chr4 122723066 122723066 1 + G T LUAD 122723067 + 122723047 122723087 41 ATGCTGCATTGTGGAACTTGGAAAAACAAGGTAACAGGATT ATGCTGCATTGTGGAACTTTGAAAAACAAGGTAACAGGATT < 41bp 0.562401631479206 0.823306567282839 NA NA prediction 0.521809871607267 Functional Gain - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122723067 chr4:122723066 stopgain 0.982 1 20 hm7G_associated_SNPs_19550 0 0 1 0 2 EXOSC9 chr4:122722982 3'AG 122722982 Downstream 85bp 18283 chr4 122723066 122723066 1 + G T LUAD 122723067 + 122723047 122723087 41 ATGCTGCATTGTGGAACTTGGAAAAACAAGGTAACAGGATT ATGCTGCATTGTGGAACTTTGAAAAACAAGGTAACAGGATT < 41bp 0.562401631479206 0.823306567282839 NA NA prediction 0.521809871607267 Functional Gain - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122723067 chr4:122723066 stopgain 0.982 1 20 hm7G_associated_SNPs_19550 0 0 1 0 2 EXOSC9 chr4:122723076 5'GT 122723076 Upstream 11bp 18284 chr7 117874823 117874823 1 + G T LUAD 117874824 + 117874804 117874844 41 GTGCAGACCCAGATCTGAGGGATATTCGTTATAATACTGTT GTGCAGACCCAGATCTGAGTGATATTCGTTATAATACTGTT < 41bp 0.441065227498992 0.76090487212409 NA NA prediction 0.52180974424818 Functional Gain - ANKRD7 ENSG00000106013 CDS Human protein_coding chr7:117874824 chr7:117874823 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_19551 0 0 0 0 1 ANKRD7 chr7:117874755 3'AG 117874755 Downstream 69bp 18285 chr14 93393901 93393901 1 + G T THCA 93393902 + 93393882 93393922 41 TTCTTCATTGCAGATGAACGGATCCTTTCCATTCTGAGACA TTCTTCATTGCAGATGAACTGATCCTTTCCATTCTGAGACA < 41bp 0.438087945909571 0.760893906141019 NA NA prediction 0.521787812282039 Functional Gain - CHGA ENSG00000100604 CDS Human protein_coding chr14:93393902 chr14:93393901 stopgain 0.678 4 20 hm7G_associated_SNPs_19552 0 0 0 0 2 CHGA chr14:93393895 3'AG 93393895 Downstream 7bp 18286 chr14 93393901 93393901 1 + G T THCA 93393902 + 93393882 93393922 41 TTCTTCATTGCAGATGAACGGATCCTTTCCATTCTGAGACA TTCTTCATTGCAGATGAACTGATCCTTTCCATTCTGAGACA < 41bp 0.438087945909571 0.760893906141019 NA NA prediction 0.521787812282039 Functional Gain - CHGA ENSG00000100604 CDS Human protein_coding chr14:93393902 chr14:93393901 stopgain 0.678 4 20 hm7G_associated_SNPs_19552 0 0 0 0 2 CHGA chr14:93393963 5'GT 93393963 Upstream 63bp 18287 chr19 4498361 4498361 1 + G T UCEC 4498362 + 4498342 4498382 41 AGATCAAGTTTGCCCTAAAGGTCGACAGCCCGGTAAGACCC AGATCAAGTTTGCCCTAAATGTCGACAGCCCGGTAAGACCC < 41bp 0.432718720302102 0.760877259532505 NA NA prediction 0.521754519065009 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4498362 chr19:4498361 nonsynonymous SNV 0.109 3 20 hm7G_associated_SNPs_19553 0 0 1 0 2 HDGFL2 chr19:4498303 3'AG 4498303 Downstream 59bp 18288 chr19 4498361 4498361 1 + G T UCEC 4498362 + 4498342 4498382 41 AGATCAAGTTTGCCCTAAAGGTCGACAGCCCGGTAAGACCC AGATCAAGTTTGCCCTAAATGTCGACAGCCCGGTAAGACCC < 41bp 0.432718720302102 0.760877259532505 NA NA prediction 0.521754519065009 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4498362 chr19:4498361 nonsynonymous SNV 0.109 3 20 hm7G_associated_SNPs_19553 0 0 1 0 2 HDGFL2 chr19:4498373 5'GT 4498373 Upstream 13bp 18289 chr9 33246718 33246718 1 + G T THYM 33246719 + 33246699 33246739 41 ATGAATGCCAGCTCTGCTTGGCCCGGATGTAAGTCTGCCCC ATGAATGCCAGCTCTGCTTTGCCCGGATGTAAGTCTGCCCC < 41bp 0.602073522922385 0.862942242102547 NA NA prediction 0.521737438360324 Functional Gain - SPINK4 ENSG00000122711 CDS Human protein_coding chr9:33246719 chr9:33246718 nonsynonymous SNV 0.085 0 20 hm7G_associated_SNPs_19554 0 0 0 0 1 SPINK4 chr9:33246726 5'GT 33246726 Upstream 9bp 18290 chr1 156845339 156845339 1 + G T COAD 156845340 + 156845320 156845360 41 GTGCTGGCTCCAGAGGATGGGCTGGCCATGTCCCTGCATTT GTGCTGGCTCCAGAGGATGTGCTGGCCATGTCCCTGCATTT < 41bp 0.416702901786159 0.760863878521594 NA NA prediction 0.521727757043188 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845340 chr1:156845339 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_19556 0 0 1 0 1 NTRK1 chr1:156845312 3'AG 156845312 Downstream 28bp 18291 chr1 44437875 44437875 1 + G T THCA 44437876 + 44437856 44437896 41 CCACCTGAGTCAGAGCTGTGGGAAACCCCAGACGTGTCACT CCACCTGAGTCAGAGCTGTTGGAAACCCCAGACGTGTCACT < 41bp 0.418476705598658 0.760853565536682 NA NA prediction 0.521707131073365 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437876 chr1:44437875 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_19558 0 0 1 0 1 DPH2 chr1:44437830 3'AG 44437830 Downstream 46bp 18292 chr13 23808753 23808753 1 + G T UCEC 23808754 + 23808734 23808774 41 TTTTTTTTTTTAACAGGCAGGAATGGGCCACTTGTGTGTAA TTTTTTTTTTTAACAGGCATGAATGGGCCACTTGTGTGTAA < 41bp 0.578157898450786 0.839009434747283 NA NA prediction 0.521703072592995 Functional Gain - SGCG ENSG00000102683 CDS Human protein_coding chr13:23808754 chr13:23808753 stopgain 0.882 1 20 hm7G_associated_SNPs_19559 0 0 0 0 2 SGCG chr13:23808750 3'AG 23808750 Downstream 4bp 18293 chr13 23808753 23808753 1 + G T UCEC 23808754 + 23808734 23808774 41 TTTTTTTTTTTAACAGGCAGGAATGGGCCACTTGTGTGTAA TTTTTTTTTTTAACAGGCATGAATGGGCCACTTGTGTGTAA < 41bp 0.578157898450786 0.839009434747283 NA NA prediction 0.521703072592995 Functional Gain - SGCG ENSG00000102683 CDS Human protein_coding chr13:23808754 chr13:23808753 stopgain 0.882 1 20 hm7G_associated_SNPs_19559 0 0 0 0 2 SGCG chr13:23808851 5'GT 23808851 Upstream 99bp 18294 chr11 6260445 6260445 1 + G T LUSC 6260446 + 6260426 6260466 41 ACCACAGAACCATGAGCCAGGACACCAAAGTGAAGACAACA ACCACAGAACCATGAGCCATGACACCAAAGTGAAGACAACA < 41bp 0.434989459290007 0.760850394543534 NA NA prediction 0.521700789087068 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6260446 chr11:6260445 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_19560 0 0 0 0 1 CNGA4 chr11:6260498 5'GT 6260498 Upstream 54bp 18295 chrX 107396915 107396915 1 + G T COAD 107396916 + 107396896 107396936 41 TGGAGGAGTTTGATCTGGAGGAAGATTTTGAGATTCTGAGT TGGAGGAGTTTGATCTGGATGAAGATTTTGAGATTCTGAGT < 41bp 0.465402998690192 0.760841419163832 NA NA prediction 0.521682838327664 Functional Gain - ATG4A ENSG00000101844 CDS Human protein_coding chrX:107396916 chrX:107396915 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19561 0 0 1 1 1 ATG4A chrX:107396872 3'AG 107396872 Downstream 44bp 18296 chr11 89405072 89405072 1 + G T LUAD 89405073 + 89405053 89405093 41 AGACAGATATGTCATTCTGGGAGGTCACCGGGACTCATGGG AGACAGATATGTCATTCTGTGAGGTCACCGGGACTCATGGG < 41bp 0.542272309577903 0.803097514480449 NA NA prediction 0.521650409805091 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89405073 chr11:89405072 . . 0 20 hm7G_associated_SNPs_19562 0 0 0 0 1 FOLH1B chr11:89405055 3'AG 89405055 Downstream 18bp 18297 chr2 202131458 202131458 1 + G T UCEC 202131459 + 202131439 202131479 41 CCTACCTAAACACTAGAAAGGAGGAGATGGAAAGGGAACTT CCTACCTAAACACTAGAAATGAGGAGATGGAAAGGGAACTT < 41bp 0.534510612659634 0.795332352710201 NA NA prediction 0.521643480101134 Functional Gain - CASP8 ENSG00000064012 CDS Human protein_coding chr2:202131459 chr2:202131458 nonsynonymous SNV 0.328 2 20 hm7G_associated_SNPs_19563 0 0 1 2 1 CASP8 chr2:202131514 5'GT 202131514 Upstream 57bp 18298 chr19 58928251 58928251 1 + G T STAD 58928252 + 58928232 58928272 41 ACAGAGTCATCCAGCACCAGGACACTCATAGTGAGGGGAAA ACAGAGTCATCCAGCACCATGACACTCATAGTGAGGGGAAA < 41bp 0.445375410408007 0.760802928059612 NA NA prediction 0.521605856119223 Functional Gain - ZNF584 ENSG00000171574 CDS Human protein_coding chr19:58928252 chr19:58928251 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_19564 0 0 1 0 1 ZNF584 chr19:58928178 3'AG 58928178 Downstream 74bp 18299 chr3 14763290 14763290 1 + G T OV 14763291 + 14763271 14763311 41 GGAATGGCATATGACAAACGGGTAAGGCAAGGCAGACTATG GGAATGGCATATGACAAACTGGTAAGGCAAGGCAGACTATG < 41bp 0.598108211931188 0.858907372343837 NA NA prediction 0.521598320825298 Functional Gain - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14763291 chr3:14763290 nonsynonymous SNV 0.954 3 20 hm7G_associated_SNPs_19566 0 0 0 0 1 C3orf20 chr3:14763291 5'GT 14763291 Upstream 2bp 18300 chr10 25885700 25885700 1 + G T LUAD 25885701 + 25885681 25885721 41 CCTGGAGTGAGCACAGCTTGGATCCAGAGGACATTCGGGTA CCTGGAGTGAGCACAGCTTTGATCCAGAGGACATTCGGGTA < 41bp 0.601131400498063 0.861924397807551 NA NA prediction 0.521585994618976 Functional Gain - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25885701 chr10:25885700 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19568 0 0 0 0 1 GPR158 chr10:25885718 5'GT 25885718 Upstream 19bp 18301 chr2 99227273 99227273 1 + G T UCEC 99227274 + 99227254 99227294 41 TGGCTTTGTGCTGGACATGGGATTCTTTGAGACAATAAAGC TGGCTTTGTGCTGGACATGTGATTCTTTGAGACAATAAAGC < 41bp 0.595542833066135 0.85633103886979 NA NA prediction 0.521576411607308 Functional Gain - UNC50 ENSG00000115446 CDS Human protein_coding chr2:99227274 chr2:99227273 stopgain 1.000 1 20 hm7G_associated_SNPs_19569 0 0 1 0 1 UNC50 chr2:99227358 5'GT 99227358 Upstream 86bp 18302 chr14 93397650 93397650 1 + G T UCEC 93397651 + 93397631 93397671 41 AGAAAAGAGAGGATTCCAAGGAGGCAGAGAAAAGTGGTGAA AGAAAAGAGAGGATTCCAATGAGGCAGAGAAAAGTGGTGAA < 41bp 0.606615184525985 0.867401005122515 NA NA prediction 0.52157164119306 Functional Gain - CHGA ENSG00000100604 CDS Human protein_coding chr14:93397651 chr14:93397650 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_19570 0 0 0 1 1 CHGA chr14:93397595 3'AG 93397595 Downstream 56bp 18303 chr1 32542843 32542843 1 + G T UCEC 32542844 + 32542824 32542864 41 CACCGTTCTCACGGCAACAGGCTGGAGTCTGTGCCGATCCC CACCGTTCTCACGGCAACATGCTGGAGTCTGTGCCGATCCC < 41bp 0.611445578081327 0.872226395881014 NA NA prediction 0.521561635599374 Functional Gain - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32542844 chr1:32542843 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19572 0 0 0 0 2 TMEM39B chr1:32542765 3'AG 32542765 Downstream 79bp 18304 chr1 32542843 32542843 1 + G T UCEC 32542844 + 32542824 32542864 41 CACCGTTCTCACGGCAACAGGCTGGAGTCTGTGCCGATCCC CACCGTTCTCACGGCAACATGCTGGAGTCTGTGCCGATCCC < 41bp 0.611445578081327 0.872226395881014 NA NA prediction 0.521561635599374 Functional Gain - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32542844 chr1:32542843 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19572 0 0 0 0 2 TMEM39B chr1:32542919 5'GT 32542919 Upstream 77bp 18305 chr2 208432219 208432219 1 + G T UCEC 208432220 + 208432200 208432240 41 CAGAAAGTGAAGATTCACAGGAGTCAGTGGATAGTGTAACT CAGAAAGTGAAGATTCACATGAGTCAGTGGATAGTGTAACT < 41bp 0.448153771847841 0.76076305552229 NA NA prediction 0.52152611104458 Functional Gain - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208432220 chr2:208432219 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19575 0 0 1 2 2 CREB1 chr2:208432187 3'AG 208432187 Downstream 33bp 18306 chr2 208432219 208432219 1 + G T UCEC 208432220 + 208432200 208432240 41 CAGAAAGTGAAGATTCACAGGAGTCAGTGGATAGTGTAACT CAGAAAGTGAAGATTCACATGAGTCAGTGGATAGTGTAACT < 41bp 0.448153771847841 0.76076305552229 NA NA prediction 0.52152611104458 Functional Gain - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208432220 chr2:208432219 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19575 0 0 1 2 2 CREB1 chr2:208432287 5'GT 208432287 Upstream 69bp 18307 chr19 49133765 49133765 1 + G T ESCA 49133766 + 49133746 49133786 41 ACAGCCCGGAGCTGCCCACGGGCTGCAGCCAGTATGCCAGG ACAGCCCGGAGCTGCCCACTGGCTGCAGCCAGTATGCCAGG < 41bp 0.440587142592345 0.76076294190803 NA NA prediction 0.521525883816061 Functional Gain - DBP;SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49133766 chr19:49133765 nonsynonymous SNV 0.047 1 20 hm7G_associated_SNPs_19576 0 0 0 0 1 DBP;SPHK2 chr19:49133691 3'AG 49133691 Downstream 75bp 18308 chr15 91337503 91337503 1 + G T ESCA 91337504 + 91337484 91337524 41 GCAGGAGAATACAGCTTTTGGCCTACTTTGGTGAAAATGGA GCAGGAGAATACAGCTTTTTGCCTACTTTGGTGAAAATGGA < 41bp 0.431326583310885 0.760761854578239 NA NA prediction 0.521523709156477 Functional Gain - BLM ENSG00000197299 CDS Human protein_coding chr15:91337504 chr15:91337503 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19577 0 0 1 0 1 BLM chr15:91337587 5'GT 91337587 Upstream 85bp 18309 chr8 11162519 11162519 1 + G T LUAD 11162520 + 11162500 11162540 41 TATTACCACAAAAAAAATGGGATGGTAAGTGCACAGCACTA TATTACCACAAAAAAAATGTGATGGTAAGTGCACAGCACTA < 41bp 0.581644801980565 0.842393566648444 NA NA prediction 0.521497529335759 Functional Gain - MTMR9 ENSG00000104643 CDS Human protein_coding chr8:11162520 chr8:11162519 nonsynonymous SNV 0.863 2 20 hm7G_associated_SNPs_19579 0 0 1 0 1 MTMR9 chr8:11162523 5'GT 11162523 Upstream 5bp 18310 chr19 1979928 1979928 1 + G T LUAD 1979929 + 1979909 1979949 41 GGCGTTGAACTCCACCAACGGGGAGCTGAATGCGGACGACC GGCGTTGAACTCCACCAACTGGGAGCTGAATGCGGACGACC < 41bp 0.615956103345019 0.876703481342727 NA NA prediction 0.521494755995416 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979929 chr19:1979928 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_19580 0 0 1 0 2 CSNK1G2 chr19:1979910 3'AG 1979910 Downstream 19bp 18311 chr19 1979928 1979928 1 + G T LUAD 1979929 + 1979909 1979949 41 GGCGTTGAACTCCACCAACGGGGAGCTGAATGCGGACGACC GGCGTTGAACTCCACCAACTGGGAGCTGAATGCGGACGACC < 41bp 0.615956103345019 0.876703481342727 NA NA prediction 0.521494755995416 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979929 chr19:1979928 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_19580 0 0 1 0 2 CSNK1G2 chr19:1980016 5'GT 1980016 Upstream 89bp 18312 chr1 220752848 220752848 1 + G T COAD 220752849 + 220752829 220752869 41 TACAAAAAACAATAGGGAAGGGAAATTTTGCCAAAGTCAAA TACAAAAAACAATAGGGAATGGAAATTTTGCCAAAGTCAAA < 41bp 0.451388583592071 0.760733665966475 NA NA prediction 0.52146733193295 Functional Gain - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220752849 chr1:220752848 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19582 0 0 1 0 1 MARK1 chr1:220752899 5'GT 220752899 Upstream 52bp 18313 chr4 40776871 40776871 1 + G T GBM 40776872 + 40776852 40776892 41 ATGATAAAGTCTTTGCTGTGGATCAACATTGCTATGATGTC ATGATAAAGTCTTTGCTGTTGATCAACATTGCTATGATGTC < 41bp 0.450898208766919 0.760723678042626 NA NA prediction 0.521447356085252 Functional Gain - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40776872 chr4:40776871 synonymous SNV . 0 20 hm7G_associated_SNPs_19583 0 0 0 0 2 NSUN7 chr4:40776784 3'AG 40776784 Downstream 88bp 18314 chr4 40776871 40776871 1 + G T GBM 40776872 + 40776852 40776892 41 ATGATAAAGTCTTTGCTGTGGATCAACATTGCTATGATGTC ATGATAAAGTCTTTGCTGTTGATCAACATTGCTATGATGTC < 41bp 0.450898208766919 0.760723678042626 NA NA prediction 0.521447356085252 Functional Gain - NSUN7 ENSG00000179299 CDS Human protein_coding chr4:40776872 chr4:40776871 synonymous SNV . 0 20 hm7G_associated_SNPs_19583 0 0 0 0 2 NSUN7 chr4:40776967 5'GT 40776967 Upstream 97bp 18315 chr14 77706943 77706943 1 + G T LUSC 77706944 + 77706924 77706964 41 CCTTCCAGGACTCCAGGATGGCCAAGCGGTGAGCACCAGGC CCTTCCAGGACTCCAGGATTGCCAAGCGGTGAGCACCAGGC < 41bp 0.618316600246591 0.87902898210139 NA NA prediction 0.521424763709598 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77706944 chr14:77706943 nonsynonymous SNV 0.028 1 20 hm7G_associated_SNPs_19584 0 0 0 0 1 TMEM63C chr14:77706951 5'GT 77706951 Upstream 9bp 18316 chr20 61594022 61594022 1 + G T LIHC 61594023 + 61594003 61594043 41 CCTGCTCCTGGAATGGTACGGCTGGCAGAGCATCTTCTATT CCTGCTCCTGGAATGGTACTGCTGGCAGAGCATCTTCTATT < 41bp 0.610395613084739 0.871103540047984 NA NA prediction 0.52141585392649 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594023 chr20:61594022 nonsynonymous SNV 0.381 4 20 hm7G_associated_SNPs_19586 0 0 1 0 2 SLC17A9 chr20:61593976 3'AG 61593976 Downstream 47bp 18317 chr20 61594022 61594022 1 + G T LIHC 61594023 + 61594003 61594043 41 CCTGCTCCTGGAATGGTACGGCTGGCAGAGCATCTTCTATT CCTGCTCCTGGAATGGTACTGCTGGCAGAGCATCTTCTATT < 41bp 0.610395613084739 0.871103540047984 NA NA prediction 0.52141585392649 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594023 chr20:61594022 nonsynonymous SNV 0.381 4 20 hm7G_associated_SNPs_19586 0 0 1 0 2 SLC17A9 chr20:61594106 5'GT 61594106 Upstream 85bp 18318 chr4 17524636 17524636 1 + G T COAD 17524637 + 17524617 17524657 41 CCGGGCAGTCAGCGGTCCTGGGGGCATCTGCCTATGGAATG CCGGGCAGTCAGCGGTCCTTGGGGCATCTGCCTATGGAATG < 41bp 0.424880004614424 0.760707408865127 NA NA prediction 0.521414817730254 Functional Gain - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524637 chr4:17524636 nonsynonymous SNV 0.477 1 20 hm7G_associated_SNPs_19587 0 0 0 0 1 CLRN2 chr4:17524666 5'GT 17524666 Upstream 31bp 18319 chr17 15928427 15928427 1 + G T UCEC 15928428 + 15928408 15928448 41 CAGCCGTCACAGGCACAAAGGATGTATGAAAAAGCTCTGCA CAGCCGTCACAGGCACAAATGATGTATGAAAAAGCTCTGCA < 41bp 0.608639145125782 0.869341861633628 NA NA prediction 0.521405433015694 Functional Gain - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15928428 chr17:15928427 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19588 0 0 1 0 2 TTC19 chr17:15928331 3'AG 15928331 Downstream 97bp 18320 chr17 15928427 15928427 1 + G T UCEC 15928428 + 15928408 15928448 41 CAGCCGTCACAGGCACAAAGGATGTATGAAAAAGCTCTGCA CAGCCGTCACAGGCACAAATGATGTATGAAAAAGCTCTGCA < 41bp 0.608639145125782 0.869341861633628 NA NA prediction 0.521405433015694 Functional Gain - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15928428 chr17:15928427 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19588 0 0 1 0 2 TTC19 chr17:15928485 5'GT 15928485 Upstream 59bp 18321 chr20 43623803 43623803 1 + G T LUSC 43623804 + 43623784 43623824 41 AGAAGTGATTCAGGAAATTGGATACAACTGTGTAGCAGACA AGAAGTGATTCAGGAAATTTGATACAACTGTGTAGCAGACA < 41bp 0.608568111032792 0.869263257509609 NA NA prediction 0.521390292953634 Functional Gain - STK4 ENSG00000101109 CDS Human protein_coding chr20:43623804 chr20:43623803 stopgain 1.000 1 20 hm7G_associated_SNPs_19589 0 0 1 0 1 STK4 chr20:43623731 3'AG 43623731 Downstream 73bp 18322 chr18 48255612 48255612 1 + G T LUSC 48255613 + 48255593 48255633 41 TACAGCGCGACCCGCGCGCGGGTTCGGCGCCACTGGCTGAG TACAGCGCGACCCGCGCGCTGGTTCGGCGCCACTGGCTGAG < 41bp 0.428493080351999 0.760644660751886 NA NA prediction 0.521289321503772 Functional Gain - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48255613 chr18:48255612 synonymous SNV . 0 20 hm7G_associated_SNPs_19594 0 0 0 0 1 MAPK4 chr18:48255528 3'AG 48255528 Downstream 85bp 18323 chr17 42807349 42807349 1 + G T LUAD 42807350 + 42807330 42807370 41 GTAAAGGCAGAGAGCAGTGGGAAAAGCCATAGAGGCTGCCC GTAAAGGCAGAGAGCAGTGTGAAAAGCCATAGAGGCTGCCC < 41bp 0.513330021451769 0.77396782594239 NA NA prediction 0.521275608981241 Functional Gain - DBF4B ENSG00000161692 CDS Human protein_coding chr17:42807350 chr17:42807349 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_19596 0 0 0 2 1 DBF4B chr17:42807273 3'AG 42807273 Downstream 77bp 18324 chr2 202744781 202744781 1 + G T LIHC 202744782 + 202744762 202744802 41 TTCCTGAAGCTGAAGACCTGGCCTCCCAGATGCTAAAAGGC TTCCTGAAGCTGAAGACCTTGCCTCCCAGATGCTAAAAGGC < 41bp 0.426423640159502 0.760632315225971 NA NA prediction 0.521264630451941 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202744782 chr2:202744781 synonymous SNV . 0 20 hm7G_associated_SNPs_19598 0 0 0 0 1 CDK15 chr2:202744751 3'AG 202744751 Downstream 31bp 18325 chr1 180243385 180243385 1 + G T UCEC 180243386 + 180243366 180243406 41 CAACGTGGGGGACGTTACAGGCGGACAGTTAATGAATGGGA CAACGTGGGGGACGTTACATGCGGACAGTTAATGAATGGGA < 41bp 0.584777393887447 0.845407475593991 NA NA prediction 0.521260163413087 Functional Gain - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180243386 chr1:180243385 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19599 0 0 0 0 1 LHX4 chr1:180243320 3'AG 180243320 Downstream 66bp 18326 chrX 153048492 153048492 1 + G T COAD 153048493 + 153048473 153048513 41 GAACATCTTGCTGTGTGTGGGGGACGCTTACATCAGGCGCC GAACATCTTGCTGTGTGTGTGGGACGCTTACATCAGGCGCC < 41bp 0.418659647354668 0.760625548290171 NA NA prediction 0.521251096580341 Functional Gain - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153048493 chrX:153048492 nonsynonymous SNV 0.868 3 20 hm7G_associated_SNPs_19600 0 0 0 0 2 SRPK3 chrX:153048408 3'AG 153048408 Downstream 85bp 18327 chrX 153048492 153048492 1 + G T COAD 153048493 + 153048473 153048513 41 GAACATCTTGCTGTGTGTGGGGGACGCTTACATCAGGCGCC GAACATCTTGCTGTGTGTGTGGGACGCTTACATCAGGCGCC < 41bp 0.418659647354668 0.760625548290171 NA NA prediction 0.521251096580341 Functional Gain - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153048493 chrX:153048492 nonsynonymous SNV 0.868 3 20 hm7G_associated_SNPs_19600 0 0 0 0 2 SRPK3 chrX:153048573 5'GT 153048573 Upstream 82bp 18328 chr5 78975457 78975457 1 + G T UCEC 78975458 + 78975438 78975478 41 AGCCATTCCAAGGCCTGATGGTATTGAATGGAGAAATAAAT AGCCATTCCAAGGCCTGATTGTATTGAATGGAGAAATAAAT < 41bp 0.450745333583 0.760611704420028 NA NA prediction 0.521223408840056 Functional Gain - PAPD4 ENSG00000164329 CDS Human protein_coding chr5:78975458 chr5:78975457 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19601 0 0 1 0 2 PAPD4 chr5:78975402 3'AG 78975402 Downstream 56bp 18329 chr5 78975457 78975457 1 + G T UCEC 78975458 + 78975438 78975478 41 AGCCATTCCAAGGCCTGATGGTATTGAATGGAGAAATAAAT AGCCATTCCAAGGCCTGATTGTATTGAATGGAGAAATAAAT < 41bp 0.450745333583 0.760611704420028 NA NA prediction 0.521223408840056 Functional Gain - PAPD4 ENSG00000164329 CDS Human protein_coding chr5:78975458 chr5:78975457 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19601 0 0 1 0 2 PAPD4 chr5:78975493 5'GT 78975493 Upstream 37bp 18330 chr20 33584208 33584208 1 + G T UCEC 33584209 + 33584189 33584229 41 CAGTGGCCCGGCTGACCAAGGAGAAGAAGGCGTTGCAGGAG CAGTGGCCCGGCTGACCAATGAGAAGAAGGCGTTGCAGGAG < 41bp 0.611609216579147 0.872217916939112 NA NA prediction 0.521217400719931 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33584209 chr20:33584208 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_19602 0 0 0 0 1 MYH7B chr20:33584149 3'AG 33584149 Downstream 60bp 18331 chr10 7769728 7769728 1 + G T SKCM 7769729 + 7769709 7769749 41 GAATGAAGCCAATAACTTGGGACTGTTAGACCCCAACTCCG GAATGAAGCCAATAACTTGTGACTGTTAGACCCCAACTCCG < 41bp 0.428045622763924 0.760602664795541 NA NA prediction 0.521205329591083 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7769729 chr10:7769728 stopgain 0.179 1 20 hm7G_associated_SNPs_19603 0 0 0 0 1 ITIH2 chr10:7769666 3'AG 7769666 Downstream 63bp 18332 chr12 72969064 72969064 1 + G T COAD 72969065 + 72969045 72969085 41 AATAACTTATTTGGACAAAGGAAGCTGGCTGCTGGGGAACA AATAACTTATTTGGACAAATGAAGCTGGCTGCTGGGGAACA < 41bp 0.559012508422834 0.819609613355939 NA NA prediction 0.52119420986621 Functional Gain - TRHDE ENSG00000072657 CDS Human protein_coding chr12:72969065 chr12:72969064 stopgain 0.995 0 20 hm7G_associated_SNPs_19604 0 0 0 0 1 TRHDE chr12:72969035 3'AG 72969035 Downstream 30bp 18333 chr3 51979064 51979064 1 + G T UCEC 51979065 + 51979045 51979085 41 CAAGCAACAGATTGCACGGGGTTTCGAGGCCTTGGAGGCGC CAAGCAACAGATTGCACGGTGTTTCGAGGCCTTGGAGGCGC < 41bp 0.601256551822472 0.861840086230698 NA NA prediction 0.521167068816453 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979065 chr3:51979064 nonsynonymous SNV 0.264 4 20 hm7G_associated_SNPs_19606 0 0 1 0 1 PARP3 chr3:51979014 3'AG 51979014 Downstream 51bp 18334 chr14 67768785 67768785 1 + G T HNSC 67768786 + 67768766 67768806 41 AAGTATTGGCCAGTATGGAGGAGAAACTGTAAAAATAGTTC AAGTATTGGCCAGTATGGATGAGAAACTGTAAAAATAGTTC < 41bp 0.441609997065096 0.760574358175171 NA NA prediction 0.521148716350342 Functional Gain - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67768786 chr14:67768785 stopgain 0.999 1 20 hm7G_associated_SNPs_19608 0 0 1 0 2 MPP5 chr14:67768689 3'AG 67768689 Downstream 97bp 18335 chr14 67768785 67768785 1 + G T HNSC 67768786 + 67768766 67768806 41 AAGTATTGGCCAGTATGGAGGAGAAACTGTAAAAATAGTTC AAGTATTGGCCAGTATGGATGAGAAACTGTAAAAATAGTTC < 41bp 0.441609997065096 0.760574358175171 NA NA prediction 0.521148716350342 Functional Gain - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67768786 chr14:67768785 stopgain 0.999 1 20 hm7G_associated_SNPs_19608 0 0 1 0 2 MPP5 chr14:67768835 5'GT 67768835 Upstream 51bp 18336 chr17 31258549 31258549 1 + G T LIHC 31258550 + 31258530 31258570 41 AGGAGCCCTCTGGAAGCATGGAGACTGTGGTGATTGTTGCC AGGAGCCCTCTGGAAGCATTGAGACTGTGGTGATTGTTGCC < 41bp 0.612669118002701 0.873219074957138 NA NA prediction 0.521099913908873 Functional Gain - TMEM98 ENSG00000006042 CDS Human protein_coding chr17:31258550 chr17:31258549 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19613 0 0 1 0 1 TMEM98 chr17:31258493 3'AG 31258493 Downstream 57bp 18337 chr16 8862056 8862056 1 + G T GBM 8862057 + 8862037 8862077 41 TTCTTGGTTTTAGGCCCCTGGCTGCCCCGACTACAGCATCC TTCTTGGTTTTAGGCCCCTTGCTGCCCCGACTACAGCATCC < 41bp 0.416213673192804 0.760544007785316 NA NA prediction 0.521088015570633 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8862057 chr16:8862056 nonsynonymous SNV 0.015 4 20 hm7G_associated_SNPs_19615 0 0 1 0 2 ABAT chr16:8862050 3'AG 8862050 Downstream 7bp 18338 chr16 8862056 8862056 1 + G T GBM 8862057 + 8862037 8862077 41 TTCTTGGTTTTAGGCCCCTGGCTGCCCCGACTACAGCATCC TTCTTGGTTTTAGGCCCCTTGCTGCCCCGACTACAGCATCC < 41bp 0.416213673192804 0.760544007785316 NA NA prediction 0.521088015570633 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8862057 chr16:8862056 nonsynonymous SNV 0.015 4 20 hm7G_associated_SNPs_19615 0 0 1 0 2 ABAT chr16:8862113 5'GT 8862113 Upstream 58bp 18339 chr17 4356342 4356342 1 + G T LAML 4356343 + 4356323 4356363 41 GGCACTGACCATCATGACCGGCGTCATTGGGGTCATCTTGG GGCACTGACCATCATGACCTGCGTCATTGGGGTCATCTTGG < 41bp 0.609849872411798 0.870393857786612 NA NA prediction 0.521087970749627 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4356343 chr17:4356342 nonsynonymous SNV 0.114 4 20 hm7G_associated_SNPs_19616 0 0 0 0 1 SPNS3 chr17:4356311 3'AG 4356311 Downstream 32bp 18340 chrX 153496115 153496115 1 + G T THCA 153496116 + 153496096 153496136 41 TGGCATTCTGCTTCTGCTGGGGACCCTACGCCTTCTTCGCA TGGCATTCTGCTTCTGCTGTGGACCCTACGCCTTCTTCGCA < 41bp 0.423474774277839 0.760543228386222 NA NA prediction 0.521086456772445 Functional Gain - OPN1MW;OPN1MW2;OPN1MW3 ENSG00000166160 CDS Human protein_coding chrX:153496116 chrX:153496115 nonsynonymous SNV 0.643 1 20 hm7G_associated_SNPs_19617 0 0 0 0 1 OPN1MW;OPN1MW2;OPN1MW3 chrX:153496017 3'AG 153496017 Downstream 99bp 18341 chr5 139197092 139197092 1 + G T STAD 139197093 + 139197073 139197113 41 TTTAGCAGGCTGGTGGCCGGGGAGTACCTCAGTTTCTTCGA TTTAGCAGGCTGGTGGCCGTGGAGTACCTCAGTTTCTTCGA < 41bp 0.419752574580939 0.760526195594931 NA NA prediction 0.521052391189861 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139197093 chr5:139197092 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_19620 0 0 0 0 2 PSD2 chr5:139197066 3'AG 139197066 Downstream 27bp 18342 chr5 139197092 139197092 1 + G T STAD 139197093 + 139197073 139197113 41 TTTAGCAGGCTGGTGGCCGGGGAGTACCTCAGTTTCTTCGA TTTAGCAGGCTGGTGGCCGTGGAGTACCTCAGTTTCTTCGA < 41bp 0.419752574580939 0.760526195594931 NA NA prediction 0.521052391189861 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139197093 chr5:139197092 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_19620 0 0 0 0 2 PSD2 chr5:139197146 5'GT 139197146 Upstream 55bp 18343 chr15 66811350 66811350 1 + G T LUAD 66811351 + 66811331 66811371 41 TGAAGGTACTTGTTGGCTAGGAGCTGAGCTTATCACAACAA TGAAGGTACTTGTTGGCTATGAGCTGAGCTTATCACAACAA < 41bp 0.439140491003723 0.760507460915909 NA NA prediction 0.521014921831817 Functional Gain - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66811351 chr15:66811350 stopgain 0.994 1 20 hm7G_associated_SNPs_19622 0 0 1 0 1 ZWILCH chr15:66811416 5'GT 66811416 Upstream 67bp 18344 chr3 129196862 129196862 1 + G T LUSC 129196863 + 129196843 129196883 41 TTTTTTTCTTTGACAGTTCGGATTAAATGCAAAGAGCTTGT TTTTTTTCTTTGACAGTTCTGATTAAATGCAAAGAGCTTGT < 41bp 0.569585152194845 0.830084456347379 NA NA prediction 0.520998608305068 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129196863 chr3:129196862 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19623 0 0 1 0 1 IFT122 chr3:129196859 3'AG 129196859 Downstream 4bp 18345 chr11 64120594 64120594 1 + G T COAD 64120595 + 64120575 64120615 41 GGTGAACGCGGGGAGCTACGGGGCCGGCTGGCGCGGCTGGA GGTGAACGCGGGGAGCTACTGGGCCGGCTGGCGCGGCTGGA < 41bp 0.612540062844862 0.873034300136942 NA NA prediction 0.520988474584159 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64120595 chr11:64120594 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_19624 0 0 1 0 1 CCDC88B chr11:64120526 3'AG 64120526 Downstream 69bp 18346 chr1 173744944 173744944 1 + G T GBM 173744945 + 173744925 173744965 41 AACCCCAGAACCAACCAGTGGTCTCCAGTGGTGGCCATGAC AACCCCAGAACCAACCAGTTGTCTCCAGTGGTGGCCATGAC < 41bp 0.59574306445764 0.856237022232264 NA NA prediction 0.520987915549247 Functional Gain - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173744945 chr1:173744944 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19625 0 0 0 0 1 KLHL20 chr1:173744981 5'GT 173744981 Upstream 38bp 18347 chr11 113813844 113813844 1 + G T GBM 113813845 + 113813825 113813865 41 TCAAGACCAGTGTGCTGGTGGGCTACACCGTCTTCAGGGTC TCAAGACCAGTGTGCTGGTTGGCTACACCGTCTTCAGGGTC < 41bp 0.612118731903487 0.872609820327115 NA NA prediction 0.520982176847257 Functional Gain - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113813845 chr11:113813844 synonymous SNV . 0 20 hm7G_associated_SNPs_19626 0 0 0 0 1 HTR3B chr11:113813914 5'GT 113813914 Upstream 71bp 18348 chr1 28818172 28818172 1 + G T LUAD 28818173 + 28818153 28818193 41 TTCCTTCAGCTCAGTCAAAGGCCAACTGTCGCTGAACTCCT TTCCTTCAGCTCAGTCAAATGCCAACTGTCGCTGAACTCCT < 41bp 0.435309909742273 0.760490812456471 NA NA prediction 0.520981624912942 Functional Gain - PHACTR4 ENSG00000204138 CDS Human protein_coding chr1:28818173 chr1:28818172 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_19627 0 0 1 0 1 PHACTR4 chr1:28818162 3'AG 28818162 Downstream 11bp 18349 chr2 26409121 26409121 1 + G T COAD 26409122 + 26409102 26409142 41 CCGGGGTGGCAATGGCAGCGGCCGGCTCTCCAGCAGCCCCC CCGGGGTGGCAATGGCAGCTGCCGGCTCTCCAGCAGCCCCC < 41bp 0.417476216129314 0.760487485340238 NA NA prediction 0.520974970680477 Functional Gain - GAREM2 ENSG00000157833 CDS Human protein_coding chr2:26409122 chr2:26409121 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_19628 0 0 0 0 1 GAREM2 chr2:26409058 3'AG 26409058 Downstream 64bp 18350 chr8 25341524 25341524 1 + G T SARC 25341525 + 25341505 25341545 41 CCTGCCTTTCTAAATATGAGGAAGAGGAAGAGAGTTACTTT CCTGCCTTTCTAAATATGATGAAGAGGAAGAGAGTTACTTT < 41bp 0.453594068896018 0.760485677824309 NA NA prediction 0.520971355648618 Functional Gain - CDCA2 ENSG00000184661 CDS Human protein_coding chr8:25341525 chr8:25341524 nonsynonymous SNV 0.837 3 20 hm7G_associated_SNPs_19629 0 0 1 0 1 CDCA2 chr8:25341482 3'AG 25341482 Downstream 43bp 18351 chr6 163510373 163510373 1 + G T LUSC 163510374 + 163510354 163510394 41 TTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGTGCCTTAT TTGTGTCAGCTGAGATGGTTGGCAAGGCCTTGGTGCCTTAT < 41bp 0.456421866445021 0.760468444355435 NA NA prediction 0.520936888710869 Functional Gain - PACRG ENSG00000112530 CDS Human protein_coding chr6:163510374 chr6:163510373 synonymous SNV . 0 20 hm7G_associated_SNPs_19632 0 0 0 0 2 PACRG chr6:163510291 3'AG 163510291 Downstream 83bp 18352 chr6 163510373 163510373 1 + G T LUSC 163510374 + 163510354 163510394 41 TTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGTGCCTTAT TTGTGTCAGCTGAGATGGTTGGCAAGGCCTTGGTGCCTTAT < 41bp 0.456421866445021 0.760468444355435 NA NA prediction 0.520936888710869 Functional Gain - PACRG ENSG00000112530 CDS Human protein_coding chr6:163510374 chr6:163510373 synonymous SNV . 0 20 hm7G_associated_SNPs_19632 0 0 0 0 2 PACRG chr6:163510440 5'GT 163510440 Upstream 68bp 18353 chr2 61019297 61019297 1 + G T STAD 61019298 + 61019278 61019318 41 TGTCAATCGAAGCTCGGGCGGACTTCAATCCAAAAGATTGT TGTCAATCGAAGCTCGGGCTGACTTCAATCCAAAAGATTGT < 41bp 0.439131007711289 0.760426433870778 NA NA prediction 0.520852867741556 Functional Gain - PAPOLG ENSG00000115421 CDS Human protein_coding chr2:61019298 chr2:61019297 stopgain 0.540 1 20 hm7G_associated_SNPs_19635 0 0 0 0 1 PAPOLG chr2:61019264 3'AG 61019264 Downstream 34bp 18354 chr2 109116074 109116074 1 + G T COAD 109116075 + 109116055 109116095 41 AGAAGTCTGCAGCTAACCTGGAATACTTGAAGAACGTCTTG AGAAGTCTGCAGCTAACCTTGAATACTTGAAGAACGTCTTG < 41bp 0.439082741445723 0.760416257698238 NA NA prediction 0.520832515396476 Functional Gain - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109116075 chr2:109116074 synonymous SNV . 0 20 hm7G_associated_SNPs_19637 0 0 0 0 1 GCC2 chr2:109116009 3'AG 109116009 Downstream 66bp 18355 chr3 155655474 155655474 1 + G T LUAD 155655475 + 155655455 155655495 41 CCCCCAGGAACTACTGAGTGGGAGTAATAAACTTCTTGTTC CCCCCAGGAACTACTGAGTTGGAGTAATAAACTTCTTGTTC < 41bp 0.452540302080588 0.760398719091028 NA NA prediction 0.520797438182056 Functional Gain - GMPS ENSG00000163655 CDS Human protein_coding chr3:155655475 chr3:155655474 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19639 0 0 0 0 1 GMPS chr3:155655380 3'AG 155655380 Downstream 95bp 18356 chr1 175066586 175066586 1 + G T LUSC 175066587 + 175066567 175066607 41 GCAAACCTGGTGACTGACCGGGTGACTGAGAATACCGCCAC GCAAACCTGGTGACTGACCTGGTGACTGAGAATACCGCCAC < 41bp 0.438630678324394 0.760390942754873 NA NA prediction 0.520781885509746 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175066587 chr1:175066586 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_19640 0 0 0 0 1 TNN chr1:175066553 3'AG 175066553 Downstream 34bp 18357 chr4 100503189 100503189 1 + G T CESC 100503190 + 100503170 100503210 41 ACCGCATTTCCTCCAACGTGGATGTGGCCTTACTATGGAGG ACCGCATTTCCTCCAACGTTGATGTGGCCTTACTATGGAGG < 41bp 0.428630981912642 0.760387248982407 NA NA prediction 0.520774497964814 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100503190 chr4:100503189 synonymous SNV . 0 20 hm7G_associated_SNPs_19641 0 0 1 0 1 MTTP chr4:100503249 5'GT 100503249 Upstream 61bp 18358 chr11 14889219 14889219 1 + G T OV 14889220 + 14889200 14889240 41 AGTGGTTAGAAGCAGAAGAGGATAATGATACTGAAAGTGGT AGTGGTTAGAAGCAGAAGATGATAATGATACTGAAAGTGGT < 41bp 0.449811377924152 0.760378418880384 NA NA prediction 0.520756837760768 Functional Gain - PDE3B ENSG00000152270 CDS Human protein_coding chr11:14889220 chr11:14889219 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_19643 0 0 1 0 1 PDE3B chr11:14889304 5'GT 14889304 Upstream 86bp 18359 chr5 68840932 68840932 1 + G T CESC 68840933 + 68840913 68840953 41 AGTCCTGTGATGAGCTGGAGGAGGACTGGATCAGGTACCGA AGTCCTGTGATGAGCTGGATGAGGACTGGATCAGGTACCGA < 41bp 0.599328056438154 0.859675286874316 NA NA prediction 0.520694460872324 Functional Gain - OCLN ENSG00000197822 CDS Human protein_coding chr5:68840933 chr5:68840932 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19645 0 0 1 0 1 OCLN chr5:68840946 5'GT 68840946 Upstream 15bp 18360 chr8 56863029 56863029 1 + G T UCEC 56863030 + 56863010 56863050 41 TATTCTAGGCATGGAGAATGGTGGAAAGCAAAGTCCCTTTT TATTCTAGGCATGGAGAATTGTGGAAAGCAAAGTCCCTTTT < 41bp 0.584506018308704 0.844843314876106 NA NA prediction 0.520674593134805 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56863030 chr8:56863029 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19646 0 0 0 0 1 LYN chr8:56863018 3'AG 56863018 Downstream 12bp 18361 chr14 24843600 24843600 1 + G T COAD 24843601 + 24843581 24843621 41 TGCCTGCTCTGTGAGAGGAGGCGAGGAACTGGTACTGACTG TGCCTGCTCTGTGAGAGGATGCGAGGAACTGGTACTGACTG < 41bp 0.557420381463275 0.81775339101291 NA NA prediction 0.520666019099271 Functional Gain - NFATC4 ENSG00000100968 CDS Human protein_coding chr14:24843601 chr14:24843600 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_19647 0 0 0 0 1 NFATC4 chr14:24843532 3'AG 24843532 Downstream 69bp 18362 chr19 55377838 55377838 1 + G T LUSC 55377839 + 55377819 55377859 41 CTACAGATGCTGCTGTAATGGACCAAGAGCCTGCGGGGGAC CTACAGATGCTGCTGTAATTGACCAAGAGCCTGCGGGGGAC < 41bp 0.443701447609656 0.760310097737682 NA NA prediction 0.520620195475364 Functional Gain - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377839 chr19:55377838 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_19650 0 0 0 0 2 KIR3DL2 chr19:55377825 3'AG 55377825 Downstream 14bp 18363 chr19 55377838 55377838 1 + G T LUSC 55377839 + 55377819 55377859 41 CTACAGATGCTGCTGTAATGGACCAAGAGCCTGCGGGGGAC CTACAGATGCTGCTGTAATTGACCAAGAGCCTGCGGGGGAC < 41bp 0.443701447609656 0.760310097737682 NA NA prediction 0.520620195475364 Functional Gain - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377839 chr19:55377838 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_19650 0 0 0 0 2 KIR3DL2 chr19:55377877 5'GT 55377877 Upstream 40bp 18364 chr1 12853416 12853416 1 + G T LUAD 12853417 + 12853397 12853437 41 CAGACTACTGGAGCTGGCAGGGCAGAGCCTGCTGAGAGACC CAGACTACTGGAGCTGGCATGGCAGAGCCTGCTGAGAGACC < 41bp 0.437496624954045 0.760307815479776 NA NA prediction 0.520615630959552 Functional Gain - PRAMEF1 ENSG00000116721 CDS Human protein_coding chr1:12853417 chr1:12853416 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_19651 0 0 0 0 1 PRAMEF1 chr1:12853352 3'AG 12853352 Downstream 65bp 18365 chr13 26927935 26927935 1 + G T LUAD 26927936 + 26927916 26927956 41 AAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCACTATT AAGCCAGTTCAGTTACCTCTGGGAATGGTGAAGTCACTATT < 41bp 0.606862648538565 0.867162462647522 NA NA prediction 0.520599628217914 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927936 chr13:26927935 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19652 0 0 1 0 2 CDK8 chr13:26927877 3'AG 26927877 Downstream 59bp 18366 chr13 26927935 26927935 1 + G T LUAD 26927936 + 26927916 26927956 41 AAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCACTATT AAGCCAGTTCAGTTACCTCTGGGAATGGTGAAGTCACTATT < 41bp 0.606862648538565 0.867162462647522 NA NA prediction 0.520599628217914 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927936 chr13:26927935 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19652 0 0 1 0 2 CDK8 chr13:26928017 5'GT 26928017 Upstream 83bp 18367 chr15 43690301 43690301 1 + G T LUSC 43690302 + 43690282 43690322 41 CCGGGAAGCCCCTGCATCTGGCTGGGCAGCCCTAGGTCTTT CCGGGAAGCCCCTGCATCTTGCTGGGCAGCCCTAGGTCTTT < 41bp 0.615399309355251 0.8756850385438 NA NA prediction 0.520571458377097 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690302 chr15:43690301 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_19654 0 0 1 0 3 TUBGCP4 chr15:43690236 3'AG 43690236 Downstream 66bp 18368 chr15 43690301 43690301 1 + G T LUSC 43690302 + 43690282 43690322 41 CCGGGAAGCCCCTGCATCTGGCTGGGCAGCCCTAGGTCTTT CCGGGAAGCCCCTGCATCTTGCTGGGCAGCCCTAGGTCTTT < 41bp 0.615399309355251 0.8756850385438 NA NA prediction 0.520571458377097 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690302 chr15:43690301 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_19654 0 0 1 0 3 TUBGCP4 chr15:43690239 3'AG 43690239 Downstream 63bp 18369 chr15 43690301 43690301 1 + G T LUSC 43690302 + 43690282 43690322 41 CCGGGAAGCCCCTGCATCTGGCTGGGCAGCCCTAGGTCTTT CCGGGAAGCCCCTGCATCTTGCTGGGCAGCCCTAGGTCTTT < 41bp 0.615399309355251 0.8756850385438 NA NA prediction 0.520571458377097 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43690302 chr15:43690301 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_19654 0 0 1 0 3 TUBGCP4 chr15:43690377 5'GT 43690377 Upstream 77bp 18370 chr7 128492680 128492680 1 + G T LUAD 128492681 + 128492661 128492701 41 GACCTCACAGCTGAATGTGGGCACCTCCACGGACGTGTCAC GACCTCACAGCTGAATGTGTGCACCTCCACGGACGTGTCAC < 41bp 0.42348878093945 0.760285218157605 NA NA prediction 0.520570436315209 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128492681 chr7:128492680 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_19655 0 0 1 0 1 FLNC chr7:128492645 3'AG 128492645 Downstream 36bp 18371 chr16 88705624 88705624 1 + G T STAD 88705625 + 88705605 88705645 41 CACAGGGGGAGGCACGAGAGGCCCTCAGCTACGACCCAGTG CACAGGGGGAGGCACGAGATGCCCTCAGCTACGACCCAGTG < 41bp 0.608637270020972 0.868885918059781 NA NA prediction 0.520497296077618 Functional Gain - IL17C ENSG00000124391 CDS Human protein_coding chr16:88705625 chr16:88705624 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_19658 0 0 0 0 1 IL17C chr16:88705717 5'GT 88705717 Upstream 94bp 18372 chr15 74917342 74917342 1 + G T UCEC 74917343 + 74917323 74917363 41 TCAAAAAAATCAAGGAGAAGGACAAAGAAAACAAGTTGTGA TCAAAAAAATCAAGGAGAATGACAAAGAAAACAAGTTGTGA < 41bp 0.605308179490292 0.865547732479499 NA NA prediction 0.520479105978414 Functional Gain - CLK3 ENSG00000179335 CDS Human other chr15:74917343 chr15:74917342 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19659 0 0 1 0 3 CLK3 chr15:74917243 3'AG 74917243 Downstream 100bp 18373 chr15 74917342 74917342 1 + G T UCEC 74917343 + 74917323 74917363 41 TCAAAAAAATCAAGGAGAAGGACAAAGAAAACAAGTTGTGA TCAAAAAAATCAAGGAGAATGACAAAGAAAACAAGTTGTGA < 41bp 0.605308179490292 0.865547732479499 NA NA prediction 0.520479105978414 Functional Gain - CLK3 ENSG00000179335 CDS Human protein_coding chr15:74917343 chr15:74917342 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19659 0 0 1 0 3 CLK3 chr15:74917245 3'AG 74917245 Downstream 98bp 18374 chr15 74917342 74917342 1 + G T UCEC 74917343 + 74917323 74917363 41 TCAAAAAAATCAAGGAGAAGGACAAAGAAAACAAGTTGTGA TCAAAAAAATCAAGGAGAATGACAAAGAAAACAAGTTGTGA < 41bp 0.605308179490292 0.865547732479499 NA NA prediction 0.520479105978414 Functional Gain - CLK3 ENSG00000179335 CDS Human protein_coding chr15:74917343 chr15:74917342 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19659 0 0 1 0 3 CLK3 chr15:74917359 5'GT 74917359 Upstream 18bp 18375 chr18 61654176 61654176 1 + G T LUAD 61654177 + 61654157 61654197 41 AAAAGTTGACAAAAAGTAAGGTTCAAGTTTTCCTTCCCAGA AAAAGTTGACAAAAAGTAATGTTCAAGTTTTCCTTCCCAGA < 41bp 0.573911876851488 0.834151122974726 NA NA prediction 0.520478492246476 Functional Gain - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61654177 chr18:61654176 nonsynonymous SNV 0.501 3 20 hm7G_associated_SNPs_19660 0 0 0 0 1 SERPINB8 chr18:61654108 3'AG 61654108 Downstream 69bp 18376 chr11 34140015 34140015 1 + G T COAD 34140016 + 34139996 34140036 41 GCAGGACACCCAGCCTGTGGGTGTGTTGGTGGACTGCTGTA GCAGGACACCCAGCCTGTGTGTGTGTTGGTGGACTGCTGTA < 41bp 0.429621812591438 0.760238934712566 NA NA prediction 0.520477869425131 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34140016 chr11:34140015 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_19661 0 0 1 0 2 NAT10 chr11:34139943 3'AG 34139943 Downstream 73bp 18377 chr11 34140015 34140015 1 + G T COAD 34140016 + 34139996 34140036 41 GCAGGACACCCAGCCTGTGGGTGTGTTGGTGGACTGCTGTA GCAGGACACCCAGCCTGTGTGTGTGTTGGTGGACTGCTGTA < 41bp 0.429621812591438 0.760238934712566 NA NA prediction 0.520477869425131 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34140016 chr11:34140015 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_19661 0 0 1 0 2 NAT10 chr11:34140050 5'GT 34140050 Upstream 36bp 18378 chr2 101881386 101881386 1 + G T UCEC 101881387 + 101881367 101881407 41 TTGCTTGGCTAAACCCCACGGAGCCTGACCACGCGATCCAG TTGCTTGGCTAAACCCCACTGAGCCTGACCACGCGATCCAG < 41bp 0.609878969038612 0.870086050688139 NA NA prediction 0.520414163299053 Functional Gain - CNOT11 ENSG00000158435 CDS Human protein_coding chr2:101881387 chr2:101881386 synonymous SNV . 0 20 hm7G_associated_SNPs_19663 0 0 1 0 1 CNOT11 chr2:101881307 3'AG 101881307 Downstream 80bp 18379 chrX 65478765 65478765 1 + G T LUSC 65478766 + 65478746 65478786 41 CTGGTACATGCTGGCCATGGGCCAAGATGTGGATCTACACA CTGGTACATGCTGGCCATGTGCCAAGATGTGGATCTACACA < 41bp 0.606342431307778 0.86653018470402 NA NA prediction 0.520375506792484 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65478766 chrX:65478765 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19667 0 0 0 0 2 HEPH chrX:65478682 3'AG 65478682 Downstream 84bp 18380 chrX 65478765 65478765 1 + G T LUSC 65478766 + 65478746 65478786 41 CTGGTACATGCTGGCCATGGGCCAAGATGTGGATCTACACA CTGGTACATGCTGGCCATGTGCCAAGATGTGGATCTACACA < 41bp 0.606342431307778 0.86653018470402 NA NA prediction 0.520375506792484 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65478766 chrX:65478765 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19667 0 0 0 0 2 HEPH chrX:65478821 5'GT 65478821 Upstream 57bp 18381 chr6 54792377 54792377 1 + G T UCEC 54792378 + 54792358 54792398 41 CAAAATTCCATGGAAAAATGGAACAGAAATTTTTGTTAGTT CAAAATTCCATGGAAAAATTGAACAGAAATTTTTGTTAGTT < 41bp 0.455124308681614 0.760157932540659 NA NA prediction 0.520315865081319 Functional Gain - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54792378 chr6:54792377 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19669 0 0 0 0 2 FAM83B chr6:54792306 3'AG 54792306 Downstream 72bp 18382 chr6 54792377 54792377 1 + G T UCEC 54792378 + 54792358 54792398 41 CAAAATTCCATGGAAAAATGGAACAGAAATTTTTGTTAGTT CAAAATTCCATGGAAAAATTGAACAGAAATTTTTGTTAGTT < 41bp 0.455124308681614 0.760157932540659 NA NA prediction 0.520315865081319 Functional Gain - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54792378 chr6:54792377 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19669 0 0 0 0 2 FAM83B chr6:54792430 5'GT 54792430 Upstream 54bp 18383 chr7 127235454 127235454 1 + G T LUAD 127235455 + 127235435 127235475 41 CCTGCTGTGTGAGTGTGATGGCACCGTGTGTTATGGCCGCC CCTGCTGTGTGAGTGTGATTGCACCGTGTGTTATGGCCGCC < 41bp 0.620189317076444 0.880322628094583 NA NA prediction 0.520266622036277 Functional Gain - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127235455 chr7:127235454 nonsynonymous SNV 0.848 4 20 hm7G_associated_SNPs_19672 0 0 0 0 1 FSCN3 chr7:127235361 3'AG 127235361 Downstream 94bp 18384 chr6 147612247 147612247 1 + G T DLBC 147612248 + 147612228 147612268 41 AGGAAAACAGTTAAAGGATGGGAAGAAGCCAGAACCATGCA AGGAAAACAGTTAAAGGATTGGAAGAAGCCAGAACCATGCA < 41bp 0.585204637804369 0.845336136167374 NA NA prediction 0.52026299672601 Functional Gain - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147612248 chr6:147612247 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19673 0 0 1 0 2 STXBP5 chr6:147612230 3'AG 147612230 Downstream 18bp 18385 chr6 147612247 147612247 1 + G T DLBC 147612248 + 147612228 147612268 41 AGGAAAACAGTTAAAGGATGGGAAGAAGCCAGAACCATGCA AGGAAAACAGTTAAAGGATTGGAAGAAGCCAGAACCATGCA < 41bp 0.585204637804369 0.845336136167374 NA NA prediction 0.52026299672601 Functional Gain - STXBP5 ENSG00000164506 CDS Human protein_coding chr6:147612248 chr6:147612247 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19673 0 0 1 0 2 STXBP5 chr6:147612308 5'GT 147612308 Upstream 62bp 18386 chr22 37267733 37267733 1 + G T UCEC 37267734 + 37267714 37267754 41 GCAACAGCGTTGACCGCATGGCAGCTCCGAGAGCAGAGGTA GCAACAGCGTTGACCGCATTGCAGCTCCGAGAGCAGAGGTA < 41bp 0.625074569260526 0.885152382377228 NA NA prediction 0.520155626233404 Functional Gain - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37267734 chr22:37267733 nonsynonymous SNV 0.232 0 20 hm7G_associated_SNPs_19677 0 0 0 0 2 NCF4 chr22:37267694 3'AG 37267694 Downstream 40bp 18387 chr22 37267733 37267733 1 + G T UCEC 37267734 + 37267714 37267754 41 GCAACAGCGTTGACCGCATGGCAGCTCCGAGAGCAGAGGTA GCAACAGCGTTGACCGCATTGCAGCTCCGAGAGCAGAGGTA < 41bp 0.625074569260526 0.885152382377228 NA NA prediction 0.520155626233404 Functional Gain - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37267734 chr22:37267733 nonsynonymous SNV 0.232 0 20 hm7G_associated_SNPs_19677 0 0 0 0 2 NCF4 chr22:37267751 5'GT 37267751 Upstream 19bp 18388 chr20 2398125 2398125 1 + G T UCEC 2398126 + 2398106 2398146 41 CCCGGGCCCAGCGGGTGAGGGTCAACCTGAGCGGTGCCACC CCCGGGCCCAGCGGGTGAGTGTCAACCTGAGCGGTGCCACC < 41bp 0.607632232820025 0.867706035300284 NA NA prediction 0.520147604960518 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2398126 chr20:2398125 nonsynonymous SNV 0.735 0 20 hm7G_associated_SNPs_19679 0 0 0 0 1 TGM6 chr20:2398219 5'GT 2398219 Upstream 95bp 18389 chr15 78778063 78778063 1 + G T UCEC 78778064 + 78778044 78778084 41 CAGGTCTTTTGGCTAAAAAGGCTGTTGAAGCTGGTCTGCGT CAGGTCTTTTGGCTAAAAATGCTGTTGAAGCTGGTCTGCGT < 41bp 0.595477585725894 0.855539853452175 NA NA prediction 0.520124535452563 Functional Gain - IREB2 ENSG00000136381 CDS Human protein_coding chr15:78778064 chr15:78778063 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_19681 0 0 0 0 1 IREB2 chr15:78778047 3'AG 78778047 Downstream 17bp 18390 chr1 24076339 24076339 1 + G T UCEC 24076340 + 24076320 24076360 41 GTCAAATTTTAGGAGACTGGGGTTGGGAAAACAGTAAATAG GTCAAATTTTAGGAGACTGTGGTTGGGAAAACAGTAAATAG < 41bp 0.591939988751208 0.85198730644586 NA NA prediction 0.520094635389304 Functional Gain - ELOA ENSG00000011007 CDS Human protein_coding chr1:24076340 chr1:24076339 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19682 0 0 1 0 2 ELOA chr1:24076332 3'AG 24076332 Downstream 8bp 18391 chr1 24076339 24076339 1 + G T UCEC 24076340 + 24076320 24076360 41 GTCAAATTTTAGGAGACTGGGGTTGGGAAAACAGTAAATAG GTCAAATTTTAGGAGACTGTGGTTGGGAAAACAGTAAATAG < 41bp 0.591939988751208 0.85198730644586 NA NA prediction 0.520094635389304 Functional Gain - ELOA ENSG00000011007 CDS Human protein_coding chr1:24076340 chr1:24076339 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19682 0 0 1 0 2 ELOA chr1:24076438 5'GT 24076438 Upstream 100bp 18392 chr15 74623621 74623621 1 + G T LUAD 74623622 + 74623602 74623642 41 CTCCTCTGAACAGGCAGCAGGGAAAGCCCTACACGGGTGGG CTCCTCTGAACAGGCAGCATGGAAAGCCCTACACGGGTGGG < 41bp 0.609101720446943 0.869144626064634 NA NA prediction 0.520085811235383 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74623622 chr15:74623621 nonsynonymous SNV 0.081 0 20 hm7G_associated_SNPs_19683 0 0 0 0 2 CCDC33 chr15:74623544 3'AG 74623544 Downstream 78bp 18393 chr15 74623621 74623621 1 + G T LUAD 74623622 + 74623602 74623642 41 CTCCTCTGAACAGGCAGCAGGGAAAGCCCTACACGGGTGGG CTCCTCTGAACAGGCAGCATGGAAAGCCCTACACGGGTGGG < 41bp 0.609101720446943 0.869144626064634 NA NA prediction 0.520085811235383 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74623622 chr15:74623621 nonsynonymous SNV 0.081 0 20 hm7G_associated_SNPs_19683 0 0 0 0 2 CCDC33 chr15:74623637 5'GT 74623637 Upstream 17bp 18394 chr1 220702191 220702191 1 + G T COAD 220702192 + 220702172 220702212 41 CCCGGACGCCATTGCCGACGGTGAACGAGCGGGACACGGAA CCCGGACGCCATTGCCGACTGTGAACGAGCGGGACACGGAA < 41bp 0.582837565235328 0.842877676447867 NA NA prediction 0.520080222425078 Functional Gain - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220702192 chr1:220702191 synonymous SNV . 0 20 hm7G_associated_SNPs_19684 0 0 0 0 1 MARK1 chr1:220702215 5'GT 220702215 Upstream 25bp 18395 chr20 31811740 31811740 1 + G T COAD 31811741 + 31811721 31811761 41 GGCTGGCTAATCAGCGGCAGGAAACACCAGCAGCAGCAAGA GGCTGGCTAATCAGCGGCATGAAACACCAGCAGCAGCAAGA < 41bp 0.607012458390758 0.867041080514276 NA NA prediction 0.520057244247035 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31811741 chr20:31811740 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_19685 0 0 0 0 1 BPIFA3 chr20:31811767 5'GT 31811767 Upstream 28bp 18396 chr1 92786180 92786180 1 + G T UCEC 92786181 + 92786161 92786201 41 CTGATTTTCAACTGCTAAAGGAAGAACAAAGGTATGGTTGA CTGATTTTCAACTGCTAAATGAAGAACAAAGGTATGGTTGA < 41bp 0.554679768301276 0.814661467780907 NA NA prediction 0.519963398959262 Functional Gain - RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92786181 chr1:92786180 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_19691 0 0 1 1 2 RPAP2 chr1:92786156 3'AG 92786156 Downstream 25bp 18397 chr1 92786180 92786180 1 + G T UCEC 92786181 + 92786161 92786201 41 CTGATTTTCAACTGCTAAAGGAAGAACAAAGGTATGGTTGA CTGATTTTCAACTGCTAAATGAAGAACAAAGGTATGGTTGA < 41bp 0.554679768301276 0.814661467780907 NA NA prediction 0.519963398959262 Functional Gain - RPAP2 ENSG00000122484 CDS Human protein_coding chr1:92786181 chr1:92786180 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_19691 0 0 1 1 2 RPAP2 chr1:92786191 5'GT 92786191 Upstream 12bp 18398 chr9 4573997 4573997 1 + G T LUAD 4573998 + 4573978 4574018 41 GCAAGCTGGGCCTTTACATGGCCACAGTCCTGACTGGGTAT GCAAGCTGGGCCTTTACATTGCCACAGTCCTGACTGGGTAT < 41bp 0.422618407451185 0.759975492340582 NA NA prediction 0.519950984681165 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4573998 chr9:4573997 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19692 0 0 0 0 2 SLC1A1 chr9:4573907 3'AG 4573907 Downstream 91bp 18399 chr9 4573997 4573997 1 + G T LUAD 4573998 + 4573978 4574018 41 GCAAGCTGGGCCTTTACATGGCCACAGTCCTGACTGGGTAT GCAAGCTGGGCCTTTACATTGCCACAGTCCTGACTGGGTAT < 41bp 0.422618407451185 0.759975492340582 NA NA prediction 0.519950984681165 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4573998 chr9:4573997 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19692 0 0 0 0 2 SLC1A1 chr9:4574014 5'GT 4574014 Upstream 18bp 18400 chrX 153041423 153041423 1 + G T UCEC 153041424 + 153041404 153041444 41 CCCCGTGGACGCCGTGACAGGCAAGGCCAAACGGACCCTGA CCCCGTGGACGCCGTGACATGCAAGGCCAAACGGACCCTGA < 41bp 0.616290647628329 0.876262410314789 NA NA prediction 0.519943525372921 Functional Gain - PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153041424 chrX:153041423 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19693 0 0 0 0 1 PLXNB3 chrX:153041342 3'AG 153041342 Downstream 82bp 18401 chr11 65486377 65486377 1 + G T LUAD 65486378 + 65486358 65486398 41 TCACCAGCATCAAGAAGGAGGATGTCATCTCCACTCTGCAG TCACCAGCATCAAGAAGGATGATGTCATCTCCACTCTGCAG < 41bp 0.425384040842257 0.759971724830589 NA NA prediction 0.519943449661177 Functional Gain - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65486378 chr11:65486377 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_19694 0 0 1 0 2 KAT5 chr11:65486344 3'AG 65486344 Downstream 34bp 18402 chr11 65486377 65486377 1 + G T LUAD 65486378 + 65486358 65486398 41 TCACCAGCATCAAGAAGGAGGATGTCATCTCCACTCTGCAG TCACCAGCATCAAGAAGGATGATGTCATCTCCACTCTGCAG < 41bp 0.425384040842257 0.759971724830589 NA NA prediction 0.519943449661177 Functional Gain - KAT5 ENSG00000172977 CDS Human protein_coding chr11:65486378 chr11:65486377 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_19694 0 0 1 0 2 KAT5 chr11:65486425 5'GT 65486425 Upstream 49bp 18403 chr8 142441037 142441037 1 + G T BLCA 142441038 + 142441018 142441058 41 TCTTCCCAGGAAGCGCCGCGGAGCCATCAACAGCAAGCAGC TCTTCCCAGGAAGCGCCGCTGAGCCATCAACAGCAAGCAGC < 41bp 0.599798861895982 0.859754568021725 NA NA prediction 0.519911412251486 Functional Gain - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142441038 chr8:142441037 stopgain 0.424 1 20 hm7G_associated_SNPs_19695 0 0 1 0 1 PTP4A3 chr8:142441027 3'AG 142441027 Downstream 11bp 18404 chr19 1528373 1528373 1 + G T UCEC 1528374 + 1528354 1528394 41 CGCCATACCCCCGCCTCTGGGCAGGATCTTCCGGAAGGTGG CGCCATACCCCCGCCTCTGTGCAGGATCTTCCGGAAGGTGG < 41bp 0.416098000959905 0.759943093232683 NA NA prediction 0.519886186465366 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1528374 chr19:1528373 nonsynonymous SNV 0.331 2 20 hm7G_associated_SNPs_19697 0 0 0 0 1 PLK5 chr19:1528427 5'GT 1528427 Upstream 55bp 18405 chr18 21739933 21739933 1 + G T BRCA 21739934 + 21739914 21739954 41 TGTAGCTAAAAAAAGTTCAGGATCTGGTGACAAATGTGCTC TGTAGCTAAAAAAAGTTCATGATCTGGTGACAAATGTGCTC < 41bp 0.48609063684969 0.759927924926483 NA NA prediction 0.519855849852965 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739934 chr18:21739933 stopgain 1.000 0 20 hm7G_associated_SNPs_19699 0 0 0 1 2 CABYR chr18:21739907 3'AG 21739907 Downstream 27bp 18406 chr18 21739933 21739933 1 + G T BRCA 21739934 + 21739914 21739954 41 TGTAGCTAAAAAAAGTTCAGGATCTGGTGACAAATGTGCTC TGTAGCTAAAAAAAGTTCATGATCTGGTGACAAATGTGCTC < 41bp 0.48609063684969 0.759927924926483 NA NA prediction 0.519855849852965 Functional Gain - CABYR ENSG00000154040 CDS Human protein_coding chr18:21739934 chr18:21739933 stopgain 1.000 0 20 hm7G_associated_SNPs_19699 0 0 0 1 2 CABYR chr18:21739910 3'AG 21739910 Downstream 24bp 18407 chr1 12918905 12918905 1 + G T rs139907015 12918906 + 12918886 12918926 41 AGACTACTGGAGCTGGCGGGGCAGAGCCTGCTGAGAGACCA AGACTACTGGAGCTGGCGGTGCAGAGCCTGCTGAGAGACCA < 41bp 0.604020686095331 0.863946524379666 NA NA prediction 0.519851676568669 Functional Gain - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12918906 chr1:12918905 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_19700 0 0 0 0 1 PRAMEF2 chr1:12918840 3'AG 12918840 Downstream 66bp 18408 chr13 25889554 25889554 1 + G T UCEC 25889555 + 25889535 25889575 41 AGCAGCTACTTCAACTGCAGGCAATGAAGGCCTTGGTGGTA AGCAGCTACTTCAACTGCATGCAATGAAGGCCTTGGTGGTA < 41bp 0.595946192035546 0.855869691398338 NA NA prediction 0.519846998725586 Functional Gain - NUP58 ENSG00000139496 CDS Human protein_coding chr13:25889555 chr13:25889554 nonsynonymous SNV 0.953 0 20 hm7G_associated_SNPs_19702 0 0 1 0 1 NUP58 chr13:25889495 3'AG 25889495 Downstream 60bp 18409 chr22 38212698 38212698 1 + G T LUAD 38212699 + 38212679 38212719 41 TGGAGGCCTTCGTGGAAGTGGGGCGACTGCACGGGGCACTG TGGAGGCCTTCGTGGAAGTTGGGCGACTGCACGGGGCACTG < 41bp 0.615668773649077 0.875581851482491 NA NA prediction 0.519826155666829 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212699 chr22:38212698 synonymous SNV . 0 20 hm7G_associated_SNPs_19703 0 0 1 0 1 GCAT chr22:38212732 5'GT 38212732 Upstream 35bp 18410 chrX 100503575 100503575 1 + G T CESC 100503576 + 100503556 100503596 41 TGTGTGGCACGGAAGTGAAGGAAAAACTTCAGTGTGAGTAG TGTGTGGCACGGAAGTGAATGAAAAACTTCAGTGTGAGTAG < 41bp 0.429303229984221 0.759906707555215 NA NA prediction 0.519813415110429 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100503576 chrX:100503575 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_19704 0 0 0 0 1 DRP2 chrX:100503503 3'AG 100503503 Downstream 73bp 18411 chr2 102842463 102842463 1 + G T LIHC 102842464 + 102842444 102842484 41 AAGATCGACATTGTTCTTTGGTATCGAAGTGCCTTCCATTC AAGATCGACATTGTTCTTTTGTATCGAAGTGCCTTCCATTC < 41bp 0.448406607561009 0.759903040016487 NA NA prediction 0.519806080032974 Functional Gain - IL1RL2 ENSG00000115598 CDS Human protein_coding chr2:102842464 chr2:102842463 nonsynonymous SNV 0.418 0 20 hm7G_associated_SNPs_19705 0 0 0 0 1 IL1RL2 chr2:102842501 5'GT 102842501 Upstream 39bp 18412 chr21 45540253 45540253 1 + G T LUSC 45540254 + 45540234 45540274 41 GGTGTGGAACACCCTCAGCGGCTTCTGCTTCGTCACTTTTA GGTGTGGAACACCCTCAGCTGCTTCTGCTTCGTCACTTTTA < 41bp 0.417906841309732 0.759893977606733 NA NA prediction 0.519787955213466 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45540254 chr21:45540253 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_19707 0 0 1 0 1 PWP2 chr21:45540229 3'AG 45540229 Downstream 25bp 18413 chr4 145568069 145568069 1 + G T LUAD 145568070 + 145568050 145568090 41 CGGCTGTCCTGCTGCCTGCGGAGTGACAGCCCGGGGCTAGG CGGCTGTCCTGCTGCCTGCTGAGTGACAGCCCGGGGCTAGG < 41bp 0.596492063234293 0.85637523169332 NA NA prediction 0.519766336918053 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145568070 chr4:145568069 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_19708 0 0 0 0 1 HHIP chr4:145568106 5'GT 145568106 Upstream 38bp 18414 chr17 7186960 7186960 1 + G T rs77409522 7186961 + 7186941 7186981 41 TATCATCTCTCAGTGGCTTGGAAGGTTCGCAGCTGGAGGGC TATCATCTCTCAGTGGCTTTGAAGGTTCGCAGCTGGAGGGC < 41bp 0.602544712984031 0.86241182616404 NA NA prediction 0.519734226360018 Functional Gain - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7186961 chr17:7186960 stopgain 0.988 1 20 hm7G_associated_SNPs_19709 0 0 0 1 1 SLC2A4 chr17:7186964 5'GT 7186964 Upstream 5bp 18415 chr6 126359855 126359855 1 + G T THCA 126359856 + 126359836 126359876 41 TTTCCAACCAAACAGAATCGGGACCAGTATTCACATCTGCT TTTCCAACCAAACAGAATCTGGACCAGTATTCACATCTGCT < 41bp 0.56287777165514 0.822743360078792 NA NA prediction 0.519731176847303 Functional Gain - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126359856 chr6:126359855 nonsynonymous SNV 0.945 0 20 hm7G_associated_SNPs_19710 0 0 1 3 1 TRMT11 chr6:126359851 3'AG 126359851 Downstream 5bp 18416 chr16 31309189 31309189 1 + G T UCEC 31309190 + 31309170 31309210 41 GCTGACGGACGTGGCCATTGGGGCCCCAGGAGAGGAGGACA GCTGACGGACGTGGCCATTTGGGCCCCAGGAGAGGAGGACA < 41bp 0.625204094835909 0.885059679814723 NA NA prediction 0.519711169957627 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309190 chr16:31309189 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_19711 0 0 0 0 1 ITGAM chr16:31309275 5'GT 31309275 Upstream 87bp 18417 chr1 46083765 46083765 1 + G T DLBC 46083766 + 46083746 46083786 41 CTGAAAGCCGGGCAGCAGTGGAGGGGACAGTGGAGGCTGGA CTGAAAGCCGGGCAGCAGTTGAGGGGACAGTGGAGGCTGGA < 41bp 0.585139839437376 0.844991972294155 NA NA prediction 0.519704265713558 Functional Gain - NASP ENSG00000132780 CDS Human protein_coding chr1:46083766 chr1:46083765 synonymous SNV . 0 20 hm7G_associated_SNPs_19713 0 0 1 0 1 NASP chr1:46083733 3'AG 46083733 Downstream 33bp 18418 chr1 158225877 158225877 1 + G T UCEC 158225878 + 158225858 158225898 41 CTTGCAGTTAGCTTATCAAGGATCAGACTTTGTGAGCTTCC CTTGCAGTTAGCTTATCAATGATCAGACTTTGTGAGCTTCC < 41bp 0.595836158030809 0.855686436215544 NA NA prediction 0.519700556369471 Functional Gain - CD1A ENSG00000158477 CDS Human protein_coding chr1:158225878 chr1:158225877 stopgain 0.006 0 20 hm7G_associated_SNPs_19714 0 0 0 0 1 CD1A chr1:158225794 3'AG 158225794 Downstream 84bp 18419 chr15 91354499 91354499 1 + G T STAD 91354500 + 91354480 91354520 41 CCGGAAGAAGTGCCGCTGAGGAGCTCGACGAGGAAATACCC CCGGAAGAAGTGCCGCTGATGAGCTCGACGAGGAAATACCC < 41bp 0.427011352581469 0.759848913215599 NA NA prediction 0.519697826431198 Functional Gain - BLM ENSG00000197299 CDS Human protein_coding chr15:91354500 chr15:91354499 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_19715 0 0 1 0 1 BLM chr15:91354435 3'AG 91354435 Downstream 65bp 18420 chr6 11538523 11538523 1 + G T UCEC 11538524 + 11538504 11538544 41 GGGGAAGATGAAGGCGGAGGGGGGCGACCACTCCATGATCA GGGGAAGATGAAGGCGGAGTGGGGCGACCACTCCATGATCA < 41bp 0.568429265195697 0.828268417712465 NA NA prediction 0.519678305033537 Functional Gain - TMEM170B ENSG00000205269 CDS Human protein_coding chr6:11538524 chr6:11538523 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_19717 0 0 1 0 1 TMEM170B chr6:11538607 5'GT 11538607 Upstream 85bp 18421 chr15 80464585 80464585 1 + G T THYM 80464586 + 80464566 80464606 41 ATGGTCCTTATGAACGACTGGAGTGGTAATTACTGGAGCTC ATGGTCCTTATGAACGACTTGAGTGGTAATTACTGGAGCTC < 41bp 0.426013694916086 0.75983795803833 NA NA prediction 0.51967591607666 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80464586 chr15:80464585 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_19718 0 0 0 0 2 FAH chr15:80464491 3'AG 80464491 Downstream 95bp 18422 chr15 80464585 80464585 1 + G T THYM 80464586 + 80464566 80464606 41 ATGGTCCTTATGAACGACTGGAGTGGTAATTACTGGAGCTC ATGGTCCTTATGAACGACTTGAGTGGTAATTACTGGAGCTC < 41bp 0.426013694916086 0.75983795803833 NA NA prediction 0.51967591607666 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80464586 chr15:80464585 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_19718 0 0 0 0 2 FAH chr15:80464590 5'GT 80464590 Upstream 6bp 18423 chr18 12262839 12262839 1 + G T THCA 12262840 + 12262820 12262860 41 TCAGGCCCCTGACATTTATGGGATCACAGACTAAGCGAGTC TCAGGCCCCTGACATTTATTGGATCACAGACTAAGCGAGTC < 41bp 0.432300159656898 0.759833262404854 NA NA prediction 0.519666524809708 Functional Gain - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12262840 chr18:12262839 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_19719 0 0 0 0 1 CIDEA chr18:12262824 3'AG 12262824 Downstream 16bp 18424 chr7 33016021 33016021 1 + G T UCEC 33016022 + 33016002 33016042 41 AATTGGCTGGCTGATTCCTGGAATGGATAAAGGGCTGCTGG AATTGGCTGGCTGATTCCTTGAATGGATAAAGGGCTGCTGG < 41bp 0.60914463173632 0.868954356062991 NA NA prediction 0.519619448653342 Functional Gain - FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33016022 chr7:33016021 stopgain 1.000 1 20 hm7G_associated_SNPs_19722 0 0 0 0 1 FKBP9 chr7:33015966 3'AG 33015966 Downstream 56bp 18425 chr5 148627364 148627364 1 + G T LUSC 148627365 + 148627345 148627385 41 CTCCAAAGTGGAATTGGCCGGCTGATTCTGAAGGAAGAAAT CTCCAAAGTGGAATTGGCCTGCTGATTCTGAAGGAAGAAAT < 41bp 0.610329902250733 0.870136109787481 NA NA prediction 0.519612415073496 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148627365 chr5:148627364 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_19723 0 0 0 0 1 ABLIM3 chr5:148627345 3'AG 148627345 Downstream 20bp 18426 chr1 6648820 6648820 1 + G T LUSC 6648821 + 6648801 6648841 41 TTCTCCCTCTTGCAGCCGTGGAGCAACTGCGTGTGCACGTC TTCTCCCTCTTGCAGCCGTTGAGCAACTGCGTGTGCACGTC < 41bp 0.605513195927423 0.865315956927393 NA NA prediction 0.519605521999942 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648821 chr1:6648820 synonymous SNV . 0 20 hm7G_associated_SNPs_19724 0 0 0 0 2 ZBTB48 chr1:6648816 3'AG 6648816 Downstream 5bp 18427 chr1 6648820 6648820 1 + G T LUSC 6648821 + 6648801 6648841 41 TTCTCCCTCTTGCAGCCGTGGAGCAACTGCGTGTGCACGTC TTCTCCCTCTTGCAGCCGTTGAGCAACTGCGTGTGCACGTC < 41bp 0.605513195927423 0.865315956927393 NA NA prediction 0.519605521999942 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648821 chr1:6648820 synonymous SNV . 0 20 hm7G_associated_SNPs_19724 0 0 0 0 2 ZBTB48 chr1:6648904 5'GT 6648904 Upstream 85bp 18428 chr1 154962131 154962131 1 + G T UCEC 154962132 + 154962112 154962152 41 GCTCTGTGTGGGCTTCAACGGGGGCAAAGACTGCACTGCCC GCTCTGTGTGGGCTTCAACTGGGGCAAAGACTGCACTGCCC < 41bp 0.609676273069386 0.869475783157298 NA NA prediction 0.519599020175824 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962132 chr1:154962131 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_19725 0 0 1 0 1 FLAD1 chr1:154962183 5'GT 154962183 Upstream 53bp 18429 chr2 149526787 149526787 1 + G T LUAD 149526788 + 149526768 149526808 41 CCCTGTGCTTTCAGAAGGCGGGCAGGATGCCAGTATTATGC CCCTGTGCTTTCAGAAGGCTGGCAGGATGCCAGTATTATGC < 41bp 0.438088653673394 0.759778024753997 NA NA prediction 0.519556049507994 Functional Gain - EPC2 ENSG00000135999 CDS Human protein_coding chr2:149526788 chr2:149526787 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19727 0 0 1 0 2 EPC2 chr2:149526720 3'AG 149526720 Downstream 68bp 18430 chr2 149526787 149526787 1 + G T LUAD 149526788 + 149526768 149526808 41 CCCTGTGCTTTCAGAAGGCGGGCAGGATGCCAGTATTATGC CCCTGTGCTTTCAGAAGGCTGGCAGGATGCCAGTATTATGC < 41bp 0.438088653673394 0.759778024753997 NA NA prediction 0.519556049507994 Functional Gain - EPC2 ENSG00000135999 CDS Human protein_coding chr2:149526788 chr2:149526787 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19727 0 0 1 0 2 EPC2 chr2:149526809 5'GT 149526809 Upstream 23bp 18431 chr22 50946857 50946857 1 + G T READ 50946858 + 50946838 50946878 41 GGACGTGGCGGCCCAGCTGGGCGAGTATCTGGAGGAGGTAA GGACGTGGCGGCCCAGCTGTGCGAGTATCTGGAGGAGGTAA < 41bp 0.602389268834588 0.862165544323165 NA NA prediction 0.519552550977154 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50946858 chr22:50946857 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19728 0 0 1 0 1 NCAPH2 chr22:50946874 5'GT 50946874 Upstream 18bp 18432 chr10 70525812 70525812 1 + G T UCEC 70525813 + 70525793 70525833 41 TATTGGACTACAGATTAGAGGATAATAAAGAACATTCATTT TATTGGACTACAGATTAGATGATAATAAAGAACATTCATTT < 41bp 0.460559669352927 0.759776145503344 NA NA prediction 0.519552291006688 Functional Gain - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70525813 chr10:70525812 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_19729 0 0 1 0 1 CCAR1 chr10:70525836 5'GT 70525836 Upstream 25bp 18433 chr1 100546107 100546107 1 + G T COAD 100546108 + 100546088 100546128 41 TATGCAATGGTCTGGGACCGGCCCTCTATGGATTCATTTTC TATGCAATGGTCTGGGACCTGCCCTCTATGGATTCATTTTC < 41bp 0.471824867683224 0.759774608251687 NA NA prediction 0.519549216503373 Functional Gain - MFSD14A ENSG00000156875 CDS Human protein_coding chr1:100546108 chr1:100546107 synonymous SNV . 0 20 hm7G_associated_SNPs_19730 0 0 1 0 1 MFSD14A chr1:100546052 3'AG 100546052 Downstream 56bp 18434 chr11 60557990 60557990 1 + G T LUAD 60557991 + 60557971 60558011 41 AGCCTTCTTAAGGAGCTGGGGGTGAGCATCCACTTCCCAGG AGCCTTCTTAAGGAGCTGGTGGTGAGCATCCACTTCCCAGG < 41bp 0.433738720598739 0.759766492414895 NA NA prediction 0.519532984829789 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60557991 chr11:60557990 nonsynonymous SNV 0.785 3 20 hm7G_associated_SNPs_19731 0 0 0 0 1 MS4A10 chr11:60557991 5'GT 60557991 Upstream 2bp 18435 chr15 42681190 42681190 1 + G T UCEC 42681191 + 42681171 42681211 41 GGCCATGGAGGACTTCACAGGAGGGGTGGCAGAGTTTTTTG GGCCATGGAGGACTTCACATGAGGGGTGGCAGAGTTTTTTG < 41bp 0.437149848798234 0.759764108296345 NA NA prediction 0.519528216592691 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42681191 chr15:42681190 stopgain 1.000 0 20 hm7G_associated_SNPs_19732 0 0 0 0 1 CAPN3 chr15:42681126 3'AG 42681126 Downstream 65bp 18436 chr16 29107526 29107526 1 + G T UCEC 29107527 + 29107507 29107547 41 ATCCTGCCATCATCAGGCAGGCTGCTGGAAATTATATTGGA ATCCTGCCATCATCAGGCATGCTGCTGGAAATTATATTGGA < 41bp 0.565553836970709 0.825312308480097 NA NA prediction 0.519516943018774 Functional Gain - RRN3P2 ENSG00000103472 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:29107527 chr16:29107526 . . 0 20 hm7G_associated_SNPs_19735 0 0 0 0 1 RRN3P2 chr16:29107452 3'AG 29107452 Downstream 75bp 18437 chr2 170371206 170371206 1 + G T STAD 170371207 + 170371187 170371227 41 GCAAAGACCTTCAAACAGAGGCTTCGCTGGATTCAGTATTA GCAAAGACCTTCAAACAGATGCTTCGCTGGATTCAGTATTA < 41bp 0.593205947790837 0.852963688767798 NA NA prediction 0.519515481953921 Functional Gain - KLHL41 ENSG00000163093;ENSG00000239474;ENSG00000251569 CDS Human other chr2:170371207 chr2:170371206 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_19736 0 0 0 0 1 KLHL41 chr2:170371241 5'GT 170371241 Upstream 36bp 18438 chr3 148889919 148889919 1 + G T UCEC 148889920 + 148889900 148889940 41 CTGTGGAACTAGAACTGAAGGATTTCATGAATGTTCTCCCA CTGTGGAACTAGAACTGAATGATTTCATGAATGTTCTCCCA < 41bp 0.571754365619383 0.831509080356074 NA NA prediction 0.519509429473383 Functional Gain - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148889920 chr3:148889919 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_19737 0 0 1 7 1 HPS3 chr3:148889882 3'AG 148889882 Downstream 38bp 18439 chr4 156825249 156825249 1 + G T UCEC 156825250 + 156825230 156825270 41 GAATAGAGCCAGCAAAGGAGGTCTTATCTATGGGAACTACC GAATAGAGCCAGCAAAGGATGTCTTATCTATGGGAACTACC < 41bp 0.587377730855143 0.847124620843614 NA NA prediction 0.519493779976942 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156825250 chr4:156825249 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_19739 0 0 0 0 2 TDO2 chr4:156825170 3'AG 156825170 Downstream 80bp 18440 chr4 156825249 156825249 1 + G T UCEC 156825250 + 156825230 156825270 41 GAATAGAGCCAGCAAAGGAGGTCTTATCTATGGGAACTACC GAATAGAGCCAGCAAAGGATGTCTTATCTATGGGAACTACC < 41bp 0.587377730855143 0.847124620843614 NA NA prediction 0.519493779976942 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156825250 chr4:156825249 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_19739 0 0 0 0 2 TDO2 chr4:156825275 5'GT 156825275 Upstream 27bp 18441 chr19 10200662 10200662 1 + G T HNSC 10200663 + 10200643 10200683 41 CTTATCCCTGCTGTGGACCGGCAGTTTGCCTGCTCCTCCTG CTTATCCCTGCTGTGGACCTGCAGTTTGCCTGCTCCTCCTG < 41bp 0.418518882334227 0.759741812773 NA NA prediction 0.519483625546 Functional Gain - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200663 chr19:10200662 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_19741 0 0 1 0 2 C19orf66 chr19:10200574 3'AG 10200574 Downstream 89bp 18442 chr19 10200662 10200662 1 + G T HNSC 10200663 + 10200643 10200683 41 CTTATCCCTGCTGTGGACCGGCAGTTTGCCTGCTCCTCCTG CTTATCCCTGCTGTGGACCTGCAGTTTGCCTGCTCCTCCTG < 41bp 0.418518882334227 0.759741812773 NA NA prediction 0.519483625546 Functional Gain - C19orf66 ENSG00000130813 CDS Human protein_coding chr19:10200663 chr19:10200662 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_19741 0 0 1 0 2 C19orf66 chr19:10200723 5'GT 10200723 Upstream 62bp 18443 chr7 23296573 23296573 1 + G T THYM 23296574 + 23296554 23296594 41 ATGGTCAGAGGACAGTGACGGGGAAAATGGCACCGGCCAAA ATGGTCAGAGGACAGTGACTGGGAAAATGGCACCGGCCAAA < 41bp 0.606366863827262 0.866104578243412 NA NA prediction 0.519475428832301 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23296574 chr7:23296573 nonsynonymous SNV 0.016 0 20 hm7G_associated_SNPs_19742 0 0 0 0 1 GPNMB chr7:23296511 3'AG 23296511 Downstream 63bp 18444 chrX 135439865 135439865 1 + G T LUAD 135439866 + 135439846 135439886 41 CTTTTCTTTTGCATTAGTTGGAACAGAGAGAAGGACAAGAA CTTTTCTTTTGCATTAGTTTGAACAGAGAGAAGGACAAGAA < 41bp 0.576677135527101 0.836404522557329 NA NA prediction 0.519454774060456 Functional Gain - ADGRG4 ENSG00000156920 CDS Human protein_coding chrX:135439866 chrX:135439865 nonsynonymous SNV 0.932 2 20 hm7G_associated_SNPs_19743 0 0 0 0 2 ADGRG4 chrX:135439863 3'AG 135439863 Downstream 3bp 18445 chrX 135439865 135439865 1 + G T LUAD 135439866 + 135439846 135439886 41 CTTTTCTTTTGCATTAGTTGGAACAGAGAGAAGGACAAGAA CTTTTCTTTTGCATTAGTTTGAACAGAGAGAAGGACAAGAA < 41bp 0.576677135527101 0.836404522557329 NA NA prediction 0.519454774060456 Functional Gain - ADGRG4 ENSG00000156920 CDS Human protein_coding chrX:135439866 chrX:135439865 nonsynonymous SNV 0.932 2 20 hm7G_associated_SNPs_19743 0 0 0 0 2 ADGRG4 chrX:135439915 5'GT 135439915 Upstream 51bp 18446 chr2 95976207 95976207 1 + G T COAD 95976208 + 95976188 95976228 41 GGCCGAGGCTCAGCCGCCAGGCTTTGATGAGATGCTGCCTG GGCCGAGGCTCAGCCGCCATGCTTTGATGAGATGCTGCCTG < 41bp 0.605119523988625 0.864836483381491 NA NA prediction 0.519433918785731 Functional Gain - KCNIP3 ENSG00000115041 CDS Human protein_coding chr2:95976208 chr2:95976207 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19744 0 0 0 0 1 KCNIP3 chr2:95976268 5'GT 95976268 Upstream 62bp 18447 chr3 179424775 179424775 1 + G T LUSC 179424776 + 179424756 179424796 41 AATCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAAT AATCTCCATACAGAAAGCATGACCCAGACACGTGGGAAAAT < 41bp 0.596999091276166 0.856713254651586 NA NA prediction 0.519428326750841 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179424776 chr3:179424775 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_19745 0 0 1 0 2 USP13 chr3:179424722 3'AG 179424722 Downstream 54bp 18448 chr3 179424775 179424775 1 + G T LUSC 179424776 + 179424756 179424796 41 AATCTCCATACAGAAAGCAGGACCCAGACACGTGGGAAAAT AATCTCCATACAGAAAGCATGACCCAGACACGTGGGAAAAT < 41bp 0.596999091276166 0.856713254651586 NA NA prediction 0.519428326750841 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179424776 chr3:179424775 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_19745 0 0 1 0 2 USP13 chr3:179424864 5'GT 179424864 Upstream 90bp 18449 chr11 102207498 102207498 1 + G T UCEC 102207499 + 102207479 102207519 41 TTTCTCCCTTAGTGCAACAGGACATAAAATATATTCCCACA TTTCTCCCTTAGTGCAACATGACATAAAATATATTCCCACA < 41bp 0.469201329811177 0.759678695793911 NA NA prediction 0.519357391587821 Functional Gain - BIRC3 ENSG00000023445 CDS Human protein_coding chr11:102207499 chr11:102207498 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_19750 0 0 0 0 2 BIRC3 chr11:102207491 3'AG 102207491 Downstream 8bp 18450 chr11 102207498 102207498 1 + G T UCEC 102207499 + 102207479 102207519 41 TTTCTCCCTTAGTGCAACAGGACATAAAATATATTCCCACA TTTCTCCCTTAGTGCAACATGACATAAAATATATTCCCACA < 41bp 0.469201329811177 0.759678695793911 NA NA prediction 0.519357391587821 Functional Gain - BIRC3 ENSG00000023445 CDS Human protein_coding chr11:102207499 chr11:102207498 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_19750 0 0 0 0 2 BIRC3 chr11:102207532 5'GT 102207532 Upstream 35bp 18451 chr20 17338980 17338980 1 + G T LUSC 17338981 + 17338961 17339001 41 TGTCATTCCAGGTAAAGATGGCTTTGCAGCAGGAAGGATTT TGTCATTCCAGGTAAAGATTGCTTTGCAGCAGGAAGGATTT < 41bp 0.602814207637691 0.8624871416581 NA NA prediction 0.519345868040819 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17338981 chr20:17338980 nonsynonymous SNV 0.942 0 20 hm7G_associated_SNPs_19751 0 0 0 0 1 PCSK2 chr20:17338972 3'AG 17338972 Downstream 9bp 18452 chr20 20232302 20232302 1 + G T LUSC 20232303 + 20232283 20232323 41 CCTGGGTTAATGTCGTGGTGGGTAGAATGACCGGCATAGAC CCTGGGTTAATGTCGTGGTTGGTAGAATGACCGGCATAGAC < 41bp 0.426953109668089 0.759669564314064 NA NA prediction 0.519339128628128 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20232303 chr20:20232302 synonymous SNV . 0 20 hm7G_associated_SNPs_19752 0 0 0 0 1 CFAP61 chr20:20232239 3'AG 20232239 Downstream 64bp 18453 chr20 1210585 1210585 1 + G T UCEC 1210586 + 1210566 1210606 41 GTTGTTCGAATCTATAACAGGAAGGCAAAATATCTTTTGGC GTTGTTCGAATCTATAACATGAAGGCAAAATATCTTTTGGC < 41bp 0.57902359404631 0.83868342011517 NA NA prediction 0.519319652137719 Functional Gain - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1210586 chr20:1210585 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19754 0 0 0 0 2 RAD21L1 chr20:1210524 3'AG 1210524 Downstream 62bp 18454 chr20 1210585 1210585 1 + G T UCEC 1210586 + 1210566 1210606 41 GTTGTTCGAATCTATAACAGGAAGGCAAAATATCTTTTGGC GTTGTTCGAATCTATAACATGAAGGCAAAATATCTTTTGGC < 41bp 0.57902359404631 0.83868342011517 NA NA prediction 0.519319652137719 Functional Gain - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1210586 chr20:1210585 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19754 0 0 0 0 2 RAD21L1 chr20:1210653 5'GT 1210653 Upstream 69bp 18455 chr1 41285134 41285134 1 + G T LUSC 41285135 + 41285115 41285155 41 TCCTACGCCGACTCGCTCTGGTGGGGGACGGTGCGTGAGGG TCCTACGCCGACTCGCTCTTGTGGGGGACGGTGCGTGAGGG < 41bp 0.428690667495663 0.759658777435495 NA NA prediction 0.519317554870991 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285135 chr1:41285134 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19755 0 0 0 0 1 KCNQ4 chr1:41285144 5'GT 41285144 Upstream 11bp 18456 chr6 76599968 76599968 1 + G T UCEC 76599969 + 76599949 76599989 41 AACGTCGAAGAAAGGAAGAGGAGGAAAGGCGGATGTGAGGC AACGTCGAAGAAAGGAAGATGAGGAAAGGCGGATGTGAGGC < 41bp 0.580540104093493 0.840183016081214 NA NA prediction 0.519285823975442 Functional Gain - MYO6 ENSG00000196586 CDS Human protein_coding chr6:76599969 chr6:76599968 nonsynonymous SNV 0.575 1 20 hm7G_associated_SNPs_19757 0 0 1 0 1 MYO6 chr6:76599982 5'GT 76599982 Upstream 15bp 18457 chr1 9780177 9780177 1 + G T LGG 9780178 + 9780158 9780198 41 CCCTGTGTTCAGATGAGAAGGGCGAGCTGCTGAACCCCACG CCCTGTGTTCAGATGAGAATGGCGAGCTGCTGAACCCCACG < 41bp 0.409808847312509 0.759633122045272 NA NA prediction 0.519266244090544 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9780178 chr1:9780177 nonsynonymous SNV 0.961 0 20 hm7G_associated_SNPs_19758 0 0 1 0 1 PIK3CD chr1:9780170 3'AG 9780170 Downstream 8bp 18458 chr13 40297530 40297530 1 + G T rs141114931 40297531 + 40297511 40297551 41 TTATGTTTTAACTAGGGTAGGCTTGAGTTACATCTATAACA TTATGTTTTAACTAGGGTATGCTTGAGTTACATCTATAACA < 41bp 0.455633603693346 0.759630652857054 NA NA prediction 0.519261305714108 Functional Gain - COG6 ENSG00000133103 CDS Human protein_coding chr13:40297531 chr13:40297530 nonsynonymous SNV 0.910 4 20 hm7G_associated_SNPs_19759 0 0 1 0 2 COG6 chr13:40297470 3'AG 40297470 Downstream 61bp 18459 chr13 40297530 40297530 1 + G T rs141114931 40297531 + 40297511 40297551 41 TTATGTTTTAACTAGGGTAGGCTTGAGTTACATCTATAACA TTATGTTTTAACTAGGGTATGCTTGAGTTACATCTATAACA < 41bp 0.455633603693346 0.759630652857054 NA NA prediction 0.519261305714108 Functional Gain - COG6 ENSG00000133103 CDS Human protein_coding chr13:40297531 chr13:40297530 nonsynonymous SNV 0.910 4 20 hm7G_associated_SNPs_19759 0 0 1 0 2 COG6 chr13:40297577 5'GT 40297577 Upstream 48bp 18460 chr1 109808758 109808758 1 + G T UCEC 109808759 + 109808739 109808779 41 GCTGCCCACGAGCGATTGAGGCTGGGATCTGGTGGCCCCGT GCTGCCCACGAGCGATTGATGCTGGGATCTGGTGGCCCCGT < 41bp 0.60830107133573 0.867921779746462 NA NA prediction 0.519241416821464 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109808759 chr1:109808758 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_19760 0 0 1 0 2 CELSR2 chr1:109808727 3'AG 109808727 Downstream 32bp 18461 chr1 109808758 109808758 1 + G T UCEC 109808759 + 109808739 109808779 41 GCTGCCCACGAGCGATTGAGGCTGGGATCTGGTGGCCCCGT GCTGCCCACGAGCGATTGATGCTGGGATCTGGTGGCCCCGT < 41bp 0.60830107133573 0.867921779746462 NA NA prediction 0.519241416821464 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109808759 chr1:109808758 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_19760 0 0 1 0 2 CELSR2 chr1:109808828 5'GT 109808828 Upstream 71bp 18462 chr1 155255046 155255046 1 + G T BRCA 155255047 + 155255027 155255067 41 CTATGAGCACCGCTACCAGGGCAAGATGTTCGATGAGGAAA CTATGAGCACCGCTACCAGTGCAAGATGTTCGATGAGGAAA < 41bp 0.62581406269085 0.885423832230456 NA NA prediction 0.519219539079213 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255047 chr1:155255046 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19762 0 0 1 0 2 HCN3 chr1:155254956 3'AG 155254956 Downstream 91bp 18463 chr1 155255046 155255046 1 + G T BRCA 155255047 + 155255027 155255067 41 CTATGAGCACCGCTACCAGGGCAAGATGTTCGATGAGGAAA CTATGAGCACCGCTACCAGTGCAAGATGTTCGATGAGGAAA < 41bp 0.62581406269085 0.885423832230456 NA NA prediction 0.519219539079213 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255047 chr1:155255046 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19762 0 0 1 0 2 HCN3 chr1:155255102 5'GT 155255102 Upstream 57bp 18464 chr19 41263318 41263318 1 + G T LIHC 41263319 + 41263299 41263339 41 TCACGGAGCCTGAAGATGAGGGGCCAGGCCTTTGTCATCTT TCACGGAGCCTGAAGATGATGGGCCAGGCCTTTGTCATCTT < 41bp 0.61177023964698 0.87135293491016 NA NA prediction 0.519165390526359 Functional Gain - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41263319 chr19:41263318 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19765 0 0 1 0 2 SNRPA chr19:41263237 3'AG 41263237 Downstream 82bp 18465 chr19 41263318 41263318 1 + G T LIHC 41263319 + 41263299 41263339 41 TCACGGAGCCTGAAGATGAGGGGCCAGGCCTTTGTCATCTT TCACGGAGCCTGAAGATGATGGGCCAGGCCTTTGTCATCTT < 41bp 0.61177023964698 0.87135293491016 NA NA prediction 0.519165390526359 Functional Gain - SNRPA ENSG00000077312 CDS Human protein_coding chr19:41263319 chr19:41263318 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19765 0 0 1 0 2 SNRPA chr19:41263409 5'GT 41263409 Upstream 92bp 18466 chr20 56138687 56138687 1 + G T LUSC 56138688 + 56138668 56138708 41 CGCATTTCCCAGCGCCTGCGGGAAGACCAACCTGGCCATGA CGCATTTCCCAGCGCCTGCTGGAAGACCAACCTGGCCATGA < 41bp 0.612547576347648 0.872119839982114 NA NA prediction 0.519144527268931 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56138688 chr20:56138687 nonsynonymous SNV 0.869 4 20 hm7G_associated_SNPs_19767 0 0 1 0 2 PCK1 chr20:56138621 3'AG 56138621 Downstream 67bp 18467 chr20 56138687 56138687 1 + G T LUSC 56138688 + 56138668 56138708 41 CGCATTTCCCAGCGCCTGCGGGAAGACCAACCTGGCCATGA CGCATTTCCCAGCGCCTGCTGGAAGACCAACCTGGCCATGA < 41bp 0.612547576347648 0.872119839982114 NA NA prediction 0.519144527268931 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56138688 chr20:56138687 nonsynonymous SNV 0.869 4 20 hm7G_associated_SNPs_19767 0 0 1 0 2 PCK1 chr20:56138783 5'GT 56138783 Upstream 97bp 18468 chr20 37546891 37546891 1 + G T LUAD 37546892 + 37546872 37546912 41 CCTGTTGAGAATGGCCTCCGGGCTCCGGTCAGTGCCTACCA CCTGTTGAGAATGGCCTCCTGGCTCCGGTCAGTGCCTACCA < 41bp 0.609921642448535 0.869485422974836 NA NA prediction 0.519127561052602 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37546892 chr20:37546891 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19768 0 0 0 0 1 PPP1R16B chr20:37546800 3'AG 37546800 Downstream 92bp 18469 chr4 108935637 108935637 1 + G T UCEC 108935638 + 108935618 108935658 41 GCACCATAGCGACCAGCACGGATGCAGCCTCCGTTGTCCAC GCACCATAGCGACCAGCACTGATGCAGCCTCCGTTGTCCAC < 41bp 0.613970734696163 0.873529970248334 NA NA prediction 0.519118471104343 Functional Gain - HADH ENSG00000138796 CDS Human protein_coding chr4:108935638 chr4:108935637 synonymous SNV . 0 20 hm7G_associated_SNPs_19769 0 0 0 0 1 HADH chr4:108935587 3'AG 108935587 Downstream 51bp 18470 chr9 140128345 140128345 1 + G T THCA 140128346 + 140128326 140128366 41 CAGCAGCTGTGGCGCCTTCGGCCCGTGCACAGAGAAGAACA CAGCAGCTGTGGCGCCTTCTGCCCGTGCACAGAGAAGAACA < 41bp 0.430726384490057 0.759538644269751 NA NA prediction 0.519077288539503 Functional Gain - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140128346 chr9:140128345 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_19771 0 0 0 0 2 SLC34A3 chr9:140128315 3'AG 140128315 Downstream 31bp 18471 chr9 140128345 140128345 1 + G T THCA 140128346 + 140128326 140128366 41 CAGCAGCTGTGGCGCCTTCGGCCCGTGCACAGAGAAGAACA CAGCAGCTGTGGCGCCTTCTGCCCGTGCACAGAGAAGAACA < 41bp 0.430726384490057 0.759538644269751 NA NA prediction 0.519077288539503 Functional Gain - SLC34A3 ENSG00000198569 CDS Human protein_coding chr9:140128346 chr9:140128345 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_19771 0 0 0 0 2 SLC34A3 chr9:140128393 5'GT 140128393 Upstream 49bp 18472 chr1 228004999 228004999 1 + G T KIRC 228005000 + 228004980 228005020 41 CAGTGGTATGAGGTGAACAGGGTGATCCTGCACCCCACATA CAGTGGTATGAGGTGAACATGGTGATCCTGCACCCCACATA < 41bp 0.421018769538809 0.759519065680033 NA NA prediction 0.519038131360065 Functional Gain - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228005000 chr1:228004999 nonsynonymous SNV 0.051 3 20 hm7G_associated_SNPs_19773 0 0 0 0 1 PRSS38 chr1:228004910 3'AG 228004910 Downstream 90bp 18473 chr15 27188372 27188372 1 + G T LUSC 27188373 + 27188353 27188393 41 CCCCCGCAGGGGTCACCACGGTGCTGACCATGACGACCCTC CCCCCGCAGGGGTCACCACTGTGCTGACCATGACGACCCTC < 41bp 0.419922418573011 0.759505835592142 NA NA prediction 0.519011671184285 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27188373 chr15:27188372 synonymous SNV . 0 20 hm7G_associated_SNPs_19776 0 0 0 0 1 GABRA5 chr15:27188362 3'AG 27188362 Downstream 11bp 18474 chr10 3189426 3189426 1 - C A UCEC 3189425 - 3189405 3189445 41 TAGGTGCGGCTGATGAAGAGGATTGCAGAAATGACAGATAT TAGGTGCGGCTGATGAAGATGATTGCAGAAATGACAGATAT < 41bp 0.607241512830041 0.866742480251175 NA NA prediction 0.519001934842268 Functional Gain - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189425 chr10:3189426 nonsynonymous SNV 0.187 4 20 hm7G_associated_SNPs_19777 0 0 1 0 2 PITRM1 chr10:3189342 5'GT 3189342 Upstream 85bp 18475 chr10 3189426 3189426 1 - C A UCEC 3189425 - 3189405 3189445 41 TAGGTGCGGCTGATGAAGAGGATTGCAGAAATGACAGATAT TAGGTGCGGCTGATGAAGATGATTGCAGAAATGACAGATAT < 41bp 0.607241512830041 0.866742480251175 NA NA prediction 0.519001934842268 Functional Gain - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189425 chr10:3189426 nonsynonymous SNV 0.187 4 20 hm7G_associated_SNPs_19777 0 0 1 0 2 PITRM1 chr10:3189442 3'AG 3189442 Downstream 17bp 18476 chr6 161135904 161135904 1 + G T LUAD 161135905 + 161135885 161135925 41 GGACTGGAATGCCAGGCCTGGGACTCTCAGAGCCCACACGC GGACTGGAATGCCAGGCCTTGGACTCTCAGAGCCCACACGC < 41bp 0.413584058481878 0.759487666634797 NA NA prediction 0.518975333269595 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161135905 chr6:161135904 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19778 0 0 0 0 2 PLG chr6:161135826 3'AG 161135826 Downstream 79bp 18477 chr6 161135904 161135904 1 + G T LUAD 161135905 + 161135885 161135925 41 GGACTGGAATGCCAGGCCTGGGACTCTCAGAGCCCACACGC GGACTGGAATGCCAGGCCTTGGACTCTCAGAGCCCACACGC < 41bp 0.413584058481878 0.759487666634797 NA NA prediction 0.518975333269595 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161135905 chr6:161135904 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19778 0 0 0 0 2 PLG chr6:161135946 5'GT 161135946 Upstream 43bp 18478 chrX 55779886 55779886 1 + G T UCEC 55779887 + 55779867 55779907 41 CAGCTGGAAATGAACCTAAGGAATTTTGCTGAAATTATCGA CAGCTGGAAATGAACCTAATGAATTTTGCTGAAATTATCGA < 41bp 0.596218336282701 0.855695463275632 NA NA prediction 0.518954253985861 Functional Gain - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55779887 chrX:55779886 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19779 0 0 0 0 2 RRAGB chrX:55779825 3'AG 55779825 Downstream 62bp 18479 chrX 55779886 55779886 1 + G T UCEC 55779887 + 55779867 55779907 41 CAGCTGGAAATGAACCTAAGGAATTTTGCTGAAATTATCGA CAGCTGGAAATGAACCTAATGAATTTTGCTGAAATTATCGA < 41bp 0.596218336282701 0.855695463275632 NA NA prediction 0.518954253985861 Functional Gain - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55779887 chrX:55779886 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19779 0 0 0 0 2 RRAGB chrX:55779947 5'GT 55779947 Upstream 62bp 18480 chrX 150154171 150154171 1 + G T UCEC 150154172 + 150154152 150154192 41 ATAAGAAGAAAAACCCAGAGGTCCCTGTCAATTTTGCGGAA ATAAGAAGAAAAACCCAGATGTCCCTGTCAATTTTGCGGAA < 41bp 0.44076610493331 0.759474952126035 NA NA prediction 0.518949904252069 Functional Gain - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150154172 chrX:150154171 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_19780 0 0 1 0 1 HMGB3 chrX:150154222 5'GT 150154222 Upstream 52bp 18481 chr6 90333241 90333241 1 + G T UCEC 90333242 + 90333222 90333262 41 CCCAGAGCAAAGGATGACAGGAGGAGAAAGTCAAGGCCCAA CCCAGAGCAAAGGATGACATGAGGAGAAAGTCAAGGCCCAA < 41bp 0.610848488024575 0.870321913433609 NA NA prediction 0.518946850818068 Functional Gain - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90333242 chr6:90333241 nonsynonymous SNV 0.584 1 20 hm7G_associated_SNPs_19781 0 0 0 0 1 ANKRD6 chr6:90333263 5'GT 90333263 Upstream 23bp 18482 chr1 7848295 7848295 1 + G T COAD 7848296 + 7848276 7848316 41 CTTCCTTTCTGGAACAACTGGACCCAAAGAGGTAACAGGAC CTTCCTTTCTGGAACAACTTGACCCAAAGAGGTAACAGGAC < 41bp 0.490141613220916 0.759472015062922 NA NA prediction 0.518944030125845 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7848296 chr1:7848295 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19782 0 0 0 0 1 PER3 chr1:7848306 5'GT 7848306 Upstream 12bp 18483 chr3 9408636 9408636 1 + G T UCEC 9408637 + 9408617 9408657 41 ACTTATTTGTGGTGGTTCAGGAGTTTCAAGATTACCAGTTC ACTTATTTGTGGTGGTTCATGAGTTTCAAGATTACCAGTTC < 41bp 0.450306678278963 0.759461713661038 NA NA prediction 0.518923427322075 Functional Gain - THUMPD3 ENSG00000134077 CDS Human protein_coding chr3:9408637 chr3:9408636 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_19783 0 0 1 0 2 THUMPD3 chr3:9408592 3'AG 9408592 Downstream 45bp 18484 chr3 9408636 9408636 1 + G T UCEC 9408637 + 9408617 9408657 41 ACTTATTTGTGGTGGTTCAGGAGTTTCAAGATTACCAGTTC ACTTATTTGTGGTGGTTCATGAGTTTCAAGATTACCAGTTC < 41bp 0.450306678278963 0.759461713661038 NA NA prediction 0.518923427322075 Functional Gain - THUMPD3 ENSG00000134077 CDS Human protein_coding chr3:9408637 chr3:9408636 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_19783 0 0 1 0 2 THUMPD3 chr3:9408669 5'GT 9408669 Upstream 34bp 18485 chrX 22132698 22132698 1 + G T GBM 22132699 + 22132679 22132719 41 ACTTCCAGGAAGATAAGAAGGAAATGGTAAGTGGTACTCCC ACTTCCAGGAAGATAAGAATGAAATGGTAAGTGGTACTCCC < 41bp 0.600770217069734 0.860192904465965 NA NA prediction 0.518845374792463 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22132699 chrX:22132698 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19786 0 0 0 0 1 PHEX chrX:22132704 5'GT 22132704 Upstream 7bp 18486 chr15 22958328 22958328 1 + G T UCEC 22958329 + 22958309 22958349 41 ACATCCTGGAGACCAAGGAGGCATCGATGATGGAGTGCGTG ACATCCTGGAGACCAAGGATGCATCGATGATGGAGTGCGTG < 41bp 0.616636914368798 0.87605556810581 NA NA prediction 0.518837307474025 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22958329 chr15:22958328 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_19787 0 0 1 0 1 CYFIP1 chr15:22958342 5'GT 22958342 Upstream 15bp 18487 chr2 219301316 219301316 1 + G T UCEC 219301317 + 219301297 219301337 41 ATCAGGATGACTTGGAAGAGGATGATGTGTTCCTACTAGAT ATCAGGATGACTTGGAAGATGATGATGTGTTCCTACTAGAT < 41bp 0.604561960651057 0.863978772302224 NA NA prediction 0.518833623302334 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219301317 chr2:219301316 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19788 0 0 1 0 1 VIL1 chr2:219301349 5'GT 219301349 Upstream 34bp 18488 chr15 93547948 93547948 1 + G T UCEC 93547949 + 93547929 93547969 41 TCCCCATTGGAGAGGATGAGGATGATGATCTGGACCAGGAG TCCCCATTGGAGAGGATGATGATGATGATCTGGACCAGGAG < 41bp 0.439231083668131 0.759416510158572 NA NA prediction 0.518833020317143 Functional Gain - CHD2 ENSG00000173575 CDS Human protein_coding chr15:93547949 chr15:93547948 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19789 0 0 1 0 1 CHD2 chr15:93547981 5'GT 93547981 Upstream 34bp 18489 chr7 104731754 104731754 1 + G T UCEC 104731755 + 104731735 104731775 41 CAGATTGCAGAAAGGAAAAGGAAGATGGTAAGTTGGGAAGC CAGATTGCAGAAAGGAAAATGAAGATGGTAAGTTGGGAAGC < 41bp 0.589484858580241 0.848862208292557 NA NA prediction 0.518754699424632 Functional Gain - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104731755 chr7:104731754 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19790 0 0 1 0 2 KMT2E chr7:104731663 3'AG 104731663 Downstream 92bp 18490 chr7 104731754 104731754 1 + G T UCEC 104731755 + 104731735 104731775 41 CAGATTGCAGAAAGGAAAAGGAAGATGGTAAGTTGGGAAGC CAGATTGCAGAAAGGAAAATGAAGATGGTAAGTTGGGAAGC < 41bp 0.589484858580241 0.848862208292557 NA NA prediction 0.518754699424632 Functional Gain - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104731755 chr7:104731754 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19790 0 0 1 0 2 KMT2E chr7:104731761 5'GT 104731761 Upstream 8bp 18491 chr5 65322195 65322195 1 + G T READ 65322196 + 65322176 65322216 41 AACTTGAGACACTTCCAGAGGAAATGGGTGATATGCAAAAA AACTTGAGACACTTCCAGATGAAATGGGTGATATGCAAAAA < 41bp 0.585605284007836 0.844969614866002 NA NA prediction 0.518728661716331 Functional Gain - ERBIN ENSG00000112851 CDS Human protein_coding chr5:65322196 chr5:65322195 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19791 0 0 1 0 2 ERBIN chr5:65322130 3'AG 65322130 Downstream 66bp 18492 chr5 65322195 65322195 1 + G T READ 65322196 + 65322176 65322216 41 AACTTGAGACACTTCCAGAGGAAATGGGTGATATGCAAAAA AACTTGAGACACTTCCAGATGAAATGGGTGATATGCAAAAA < 41bp 0.585605284007836 0.844969614866002 NA NA prediction 0.518728661716331 Functional Gain - ERBIN ENSG00000112851 CDS Human protein_coding chr5:65322196 chr5:65322195 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19791 0 0 1 0 2 ERBIN chr5:65322245 5'GT 65322245 Upstream 51bp 18493 chr1 101190363 101190363 1 + G T UCEC 101190364 + 101190344 101190384 41 CTCACCTTAATTGCTATGAGGATGGAAGATTCTGGAATTTA CTCACCTTAATTGCTATGATGATGGAAGATTCTGGAATTTA < 41bp 0.585046708060059 0.844397319507349 NA NA prediction 0.518701222894581 Functional Gain - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101190364 chr1:101190363 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_19792 0 0 0 0 1 VCAM1 chr1:101190446 5'GT 101190446 Upstream 84bp 18494 chr12 22208478 22208478 1 + G T LUSC 22208479 + 22208459 22208499 41 AGAAATGATTCGAGAAGAAGGATATGATTCTGTTTTCTCTG AGAAATGATTCGAGAAGAATGATATGATTCTGTTTTCTCTG < 41bp 0.597640881824005 0.856974474566709 NA NA prediction 0.518667185485408 Functional Gain - CMAS ENSG00000111726 CDS Human protein_coding chr12:22208479 chr12:22208478 stopgain 1.000 1 20 hm7G_associated_SNPs_19794 0 0 1 0 2 CMAS chr12:22208389 3'AG 22208389 Downstream 90bp 18495 chr12 22208478 22208478 1 + G T LUSC 22208479 + 22208459 22208499 41 AGAAATGATTCGAGAAGAAGGATATGATTCTGTTTTCTCTG AGAAATGATTCGAGAAGAATGATATGATTCTGTTTTCTCTG < 41bp 0.597640881824005 0.856974474566709 NA NA prediction 0.518667185485408 Functional Gain - CMAS ENSG00000111726 CDS Human protein_coding chr12:22208479 chr12:22208478 stopgain 1.000 1 20 hm7G_associated_SNPs_19794 0 0 1 0 2 CMAS chr12:22208544 5'GT 22208544 Upstream 67bp 18496 chrX 9912725 9912725 1 + G T SARC 9912726 + 9912706 9912746 41 GCAAGCTGCAGGTGCTCCGGGAGGCCCGCGAGAGCCTGCTG GCAAGCTGCAGGTGCTCCGTGAGGCCCGCGAGAGCCTGCTG < 41bp 0.41711380693172 0.759306674375094 NA NA prediction 0.518613348750187 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912726 chrX:9912725 synonymous SNV . 0 20 hm7G_associated_SNPs_19796 0 0 0 0 2 SHROOM2 chrX:9912681 3'AG 9912681 Downstream 45bp 18497 chrX 9912725 9912725 1 + G T SARC 9912726 + 9912706 9912746 41 GCAAGCTGCAGGTGCTCCGGGAGGCCCGCGAGAGCCTGCTG GCAAGCTGCAGGTGCTCCGTGAGGCCCGCGAGAGCCTGCTG < 41bp 0.41711380693172 0.759306674375094 NA NA prediction 0.518613348750187 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912726 chrX:9912725 synonymous SNV . 0 20 hm7G_associated_SNPs_19796 0 0 0 0 2 SHROOM2 chrX:9912684 3'AG 9912684 Downstream 42bp 18498 chr9 95831394 95831394 1 + G T UCEC 95831395 + 95831375 95831415 41 AAGTGAGATGAAAAACATAGGCCTTGTGATGGAATGGGAAA AAGTGAGATGAAAAACATATGCCTTGTGATGGAATGGGAAA < 41bp 0.600090739081354 0.859387757835467 NA NA prediction 0.518594037508225 Functional Gain - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95831395 chr9:95831394 nonsynonymous SNV 0.366 2 20 hm7G_associated_SNPs_19798 0 0 0 0 2 SUSD3 chr9:95831317 3'AG 95831317 Downstream 78bp 18499 chr9 95831394 95831394 1 + G T UCEC 95831395 + 95831375 95831415 41 AAGTGAGATGAAAAACATAGGCCTTGTGATGGAATGGGAAA AAGTGAGATGAAAAACATATGCCTTGTGATGGAATGGGAAA < 41bp 0.600090739081354 0.859387757835467 NA NA prediction 0.518594037508225 Functional Gain - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95831395 chr9:95831394 nonsynonymous SNV 0.366 2 20 hm7G_associated_SNPs_19798 0 0 0 0 2 SUSD3 chr9:95831430 5'GT 95831430 Upstream 37bp 18500 chr6 28500111 28500111 1 + G T SKCM 28500112 + 28500092 28500132 41 TTGCAGGTATGTCCGTCCAGGGGGAGGATTTGTACCTAGTT TTGCAGGTATGTCCGTCCATGGGGAGGATTTGTACCTAGTT < 41bp 0.44579913579103 0.759269321214425 NA NA prediction 0.51853864242885 Functional Gain - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28500112 chr6:28500111 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_19799 0 0 0 0 2 GPX5 chr6:28500098 3'AG 28500098 Downstream 14bp 18501 chr6 28500111 28500111 1 + G T SKCM 28500112 + 28500092 28500132 41 TTGCAGGTATGTCCGTCCAGGGGGAGGATTTGTACCTAGTT TTGCAGGTATGTCCGTCCATGGGGAGGATTTGTACCTAGTT < 41bp 0.44579913579103 0.759269321214425 NA NA prediction 0.51853864242885 Functional Gain - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28500112 chr6:28500111 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_19799 0 0 0 0 2 GPX5 chr6:28500197 5'GT 28500197 Upstream 87bp 18502 chr16 68379582 68379582 1 + G T THCA 68379583 + 68379563 68379603 41 TGTTCTCCGTTTCAGTGGCGGGACCACTGGATGCAGTGTGT TGTTCTCCGTTTCAGTGGCTGGACCACTGGATGCAGTGTGT < 41bp 0.610933429316756 0.870189832196223 NA NA prediction 0.518512805758934 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68379583 chr16:68379582 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19800 0 0 1 0 1 PRMT7 chr16:68379578 3'AG 68379578 Downstream 5bp 18503 chr20 47679815 47679815 1 + G T UCEC 47679816 + 47679796 47679836 41 CATTACTGGAGAAGTCCCAGGATAATGTTATCAAAGTATGT CATTACTGGAGAAGTCCCATGATAATGTTATCAAAGTATGT < 41bp 0.443924168756397 0.759246454057619 NA NA prediction 0.518492908115237 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47679816 chr20:47679815 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_19802 0 0 1 0 3 CSE1L chr20:47679739 3'AG 47679739 Downstream 77bp 18504 chr20 47679815 47679815 1 + G T UCEC 47679816 + 47679796 47679836 41 CATTACTGGAGAAGTCCCAGGATAATGTTATCAAAGTATGT CATTACTGGAGAAGTCCCATGATAATGTTATCAAAGTATGT < 41bp 0.443924168756397 0.759246454057619 NA NA prediction 0.518492908115237 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47679816 chr20:47679815 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_19802 0 0 1 0 3 CSE1L chr20:47679830 5'GT 47679830 Upstream 16bp 18505 chr20 47679815 47679815 1 + G T UCEC 47679816 + 47679796 47679836 41 CATTACTGGAGAAGTCCCAGGATAATGTTATCAAAGTATGT CATTACTGGAGAAGTCCCATGATAATGTTATCAAAGTATGT < 41bp 0.443924168756397 0.759246454057619 NA NA prediction 0.518492908115237 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47679816 chr20:47679815 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_19802 0 0 1 0 3 CSE1L chr20:47679881 5'GT 47679881 Upstream 67bp 18506 chr7 89937126 89937126 1 + G T KICH 89937127 + 89937107 89937147 41 AGCTGGCTAATAAATCATGGGAAGATTTCTTGGCTAGAACA AGCTGGCTAATAAATCATGTGAAGATTTCTTGGCTAGAACA < 41bp 0.440838663687724 0.759245148983605 NA NA prediction 0.518490297967209 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89937127 chr7:89937126 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19803 0 0 0 0 2 CFAP69 chr7:89937082 3'AG 89937082 Downstream 45bp 18507 chr7 89937126 89937126 1 + G T KICH 89937127 + 89937107 89937147 41 AGCTGGCTAATAAATCATGGGAAGATTTCTTGGCTAGAACA AGCTGGCTAATAAATCATGTGAAGATTTCTTGGCTAGAACA < 41bp 0.440838663687724 0.759245148983605 NA NA prediction 0.518490297967209 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89937127 chr7:89937126 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19803 0 0 0 0 2 CFAP69 chr7:89937168 5'GT 89937168 Upstream 43bp 18508 chr10 26851331 26851331 1 + G T LIHC 26851332 + 26851312 26851352 41 TCAGTGCTGTTCTCCAAGAGGCCCAGAGACATGCTGAAACA TCAGTGCTGTTCTCCAAGATGCCCAGAGACATGCTGAAACA < 41bp 0.597386462500881 0.856626973833942 NA NA prediction 0.518481022666121 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26851332 chr10:26851331 nonsynonymous SNV 0.015 0 20 hm7G_associated_SNPs_19804 0 0 0 0 2 APBB1IP chr10:26851255 3'AG 26851255 Downstream 77bp 18509 chr10 26851331 26851331 1 + G T LIHC 26851332 + 26851312 26851352 41 TCAGTGCTGTTCTCCAAGAGGCCCAGAGACATGCTGAAACA TCAGTGCTGTTCTCCAAGATGCCCAGAGACATGCTGAAACA < 41bp 0.597386462500881 0.856626973833942 NA NA prediction 0.518481022666121 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26851332 chr10:26851331 nonsynonymous SNV 0.015 0 20 hm7G_associated_SNPs_19804 0 0 0 0 2 APBB1IP chr10:26851358 5'GT 26851358 Upstream 28bp 18510 chr18 29703486 29703486 1 + G T THCA 29703487 + 29703467 29703507 41 CTGTGCTTCTTAAGCAATAGGAGTGAAACATCCACATCTGA CTGTGCTTCTTAAGCAATATGAGTGAAACATCCACATCTGA < 41bp 0.453143124990893 0.75922892842391 NA NA prediction 0.51845785684782 Functional Gain - RNF138 ENSG00000134758 CDS Human protein_coding chr18:29703487 chr18:29703486 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19807 0 0 1 0 2 RNF138 chr18:29703481 3'AG 29703481 Downstream 6bp 18511 chr18 29703486 29703486 1 + G T THCA 29703487 + 29703467 29703507 41 CTGTGCTTCTTAAGCAATAGGAGTGAAACATCCACATCTGA CTGTGCTTCTTAAGCAATATGAGTGAAACATCCACATCTGA < 41bp 0.453143124990893 0.75922892842391 NA NA prediction 0.51845785684782 Functional Gain - RNF138 ENSG00000134758 CDS Human protein_coding chr18:29703487 chr18:29703486 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19807 0 0 1 0 2 RNF138 chr18:29703537 5'GT 29703537 Upstream 52bp 18512 chr9 4844549 4844549 1 + G T rs77526515 4844550 + 4844530 4844570 41 CGGGCTTTGGGTTGTCACTGGTTGCTGAGACCACCAGTGGC CGGGCTTTGGGTTGTCACTTGTTGCTGAGACCACCAGTGGC < 41bp 0.599107937174931 0.858322313079174 NA NA prediction 0.518428751808487 Functional Gain - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4844550 chr9:4844549 synonymous SNV . 0 20 hm7G_associated_SNPs_19809 0 0 1 0 1 RCL1 chr9:4844525 3'AG 4844525 Downstream 25bp 18513 chr11 60971063 60971063 1 + G T UCEC 60971064 + 60971044 60971084 41 GGCTGCTGCTGCTGGGTCTGGTGGCACTCTCTGAGTGCATC GGCTGCTGCTGCTGGGTCTTGTGGCACTCTCTGAGTGCATC < 41bp 0.442371683164642 0.759202804569194 NA NA prediction 0.518405609138387 Functional Gain - PGA3 ENSG00000229859 CDS Human protein_coding chr11:60971064 chr11:60971063 synonymous SNV . 0 20 hm7G_associated_SNPs_19811 0 0 0 0 1 PGA3 chr11:60971092 5'GT 60971092 Upstream 30bp 18514 chr16 88666254 88666254 1 + G T COAD 88666255 + 88666235 88666275 41 CCTGATTTTGAAGAGAAAAGGTTTACGGTGACCATTGGCGA CCTGATTTTGAAGAGAAAATGTTTACGGTGACCATTGGCGA < 41bp 0.598979521883595 0.858178838389716 NA NA prediction 0.518398633012243 Functional Gain - ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88666255 chr16:88666254 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_19812 0 0 1 0 1 ZC3H18 chr16:88666199 3'AG 88666199 Downstream 56bp 18515 chr1 104163185 104163185 1 + G T LUAD 104163186 + 104163166 104163206 41 CTACTAGGTAATTGATCTGGGTGGTGAGCCAATTAAAAGCA CTACTAGGTAATTGATCTGTGTGGTGAGCCAATTAAAAGCA < 41bp 0.458059045144824 0.759187436832147 NA NA prediction 0.518374873664294 Functional Gain - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104163186 chr1:104163185 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_19815 0 0 0 0 1 AMY2A chr1:104163173 3'AG 104163173 Downstream 13bp 18516 chr4 57190355 57190355 1 + G T CESC 57190356 + 57190336 57190376 41 GCTCTGCCAGAAGAGAAGAGGCCCGAGACTGCAGTGTCCAG GCTCTGCCAGAAGAGAAGATGCCCGAGACTGCAGTGTCCAG < 41bp 0.425110410772498 0.759170813959887 NA NA prediction 0.518341627919775 Functional Gain - KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57190356 chr4:57190355 nonsynonymous SNV 0.889 1 20 hm7G_associated_SNPs_19819 0 0 0 0 2 KIAA1211 chr4:57190270 3'AG 57190270 Downstream 86bp 18517 chr4 57190355 57190355 1 + G T CESC 57190356 + 57190336 57190376 41 GCTCTGCCAGAAGAGAAGAGGCCCGAGACTGCAGTGTCCAG GCTCTGCCAGAAGAGAAGATGCCCGAGACTGCAGTGTCCAG < 41bp 0.425110410772498 0.759170813959887 NA NA prediction 0.518341627919775 Functional Gain - KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57190356 chr4:57190355 nonsynonymous SNV 0.889 1 20 hm7G_associated_SNPs_19819 0 0 0 0 2 KIAA1211 chr4:57190432 5'GT 57190432 Upstream 78bp 18518 chr3 52823843 52823843 1 + G T COAD 52823844 + 52823824 52823864 41 GGGCCTGTGTTTTCCTGGAGGGACCAAGCTGTGCTGCGGCA GGGCCTGTGTTTTCCTGGATGGACCAAGCTGTGCTGCGGCA < 41bp 0.602290427779481 0.86142426147795 NA NA prediction 0.518267667396937 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52823844 chr3:52823843 nonsynonymous SNV 0.978 0 20 hm7G_associated_SNPs_19821 0 0 1 0 1 ITIH1 chr3:52823870 5'GT 52823870 Upstream 28bp 18519 chr8 23148945 23148945 1 + G T UCEC 23148946 + 23148926 23148966 41 ACACATCCTCCTTCGTGGAGGAGCTGCCTGGAGAGAAGGAC ACACATCCTCCTTCGTGGATGAGCTGCCTGGAGAGAAGGAC < 41bp 0.615330073753617 0.874463205828508 NA NA prediction 0.518266264149781 Functional Gain - R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23148946 chr8:23148945 nonsynonymous SNV 0.089 0 20 hm7G_associated_SNPs_19822 0 0 1 0 1 R3HCC1 chr8:23148874 3'AG 23148874 Downstream 72bp 18520 chr10 105187128 105187128 1 + G T THCA 105187129 + 105187109 105187149 41 GATTCGTTCGAACCATCCCGGAGCTGAGTGTTCGGCCAAGG GATTCGTTCGAACCATCCCTGAGCTGAGTGTTCGGCCAAGG < 41bp 0.420147413089701 0.759121894783481 NA NA prediction 0.518243789566963 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105187129 chr10:105187128 synonymous SNV . 0 20 hm7G_associated_SNPs_19823 0 0 1 0 2 PDCD11 chr10:105187086 3'AG 105187086 Downstream 43bp 18521 chr10 105187128 105187128 1 + G T THCA 105187129 + 105187109 105187149 41 GATTCGTTCGAACCATCCCGGAGCTGAGTGTTCGGCCAAGG GATTCGTTCGAACCATCCCTGAGCTGAGTGTTCGGCCAAGG < 41bp 0.420147413089701 0.759121894783481 NA NA prediction 0.518243789566963 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105187129 chr10:105187128 synonymous SNV . 0 20 hm7G_associated_SNPs_19823 0 0 1 0 2 PDCD11 chr10:105187148 5'GT 105187148 Upstream 21bp 18522 chr1 155257109 155257109 1 + G T LUSC 155257110 + 155257090 155257130 41 CCTTTGAGACTGTGGCCATGGATCGGCTGCTCCGCATCGGT CCTTTGAGACTGTGGCCATTGATCGGCTGCTCCGCATCGGT < 41bp 0.412844361970857 0.759110668107712 NA NA prediction 0.518221336215425 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155257110 chr1:155257109 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19825 0 0 1 0 1 HCN3 chr1:155257128 5'GT 155257128 Upstream 20bp 18523 chr2 71206924 71206924 1 + G T UCEC 71206925 + 71206905 71206945 41 CTGCACCTCGTCATCCACAGGGACAACACCACCGTGGCCCT CTGCACCTCGTCATCCACATGGACAACACCACCGTGGCCCT < 41bp 0.618516881338049 0.877601659092565 NA NA prediction 0.518169555509031 Functional Gain - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71206925 chr2:71206924 nonsynonymous SNV 0.014 1 20 hm7G_associated_SNPs_19826 0 0 0 0 1 ANKRD53 chr2:71206990 5'GT 71206990 Upstream 67bp 18524 chr1 36380999 36380999 1 + G T LUAD 36381000 + 36380980 36381020 41 GATACTGTGCTACTGTGCGGGTACAGCGACCACGGCAAGAG GATACTGTGCTACTGTGCGTGTACAGCGACCACGGCAAGAG < 41bp 0.43231822822763 0.759083276457919 NA NA prediction 0.518166552915839 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36381000 chr1:36380999 synonymous SNV . 0 20 hm7G_associated_SNPs_19827 0 0 1 0 1 AGO1 chr1:36380949 3'AG 36380949 Downstream 51bp 18525 chr6 43029080 43029080 1 + G T UCEC 43029081 + 43029061 43029101 41 CCCCCAGGCCAGGATGTCAGGCCTGGTGTTGGGGCAGCGGG CCCCCAGGCCAGGATGTCATGCCTGGTGTTGGGGCAGCGGG < 41bp 0.616309330705492 0.875389867905319 NA NA prediction 0.518161074399653 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43029081 chr6:43029080 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19828 0 0 1 0 1 KLC4 chr6:43029049 3'AG 43029049 Downstream 32bp 18526 chr1 175066629 175066629 1 + G T STAD 175066630 + 175066610 175066650 41 TCTCCTGGGACCCGGTACAGGCCACCATTGACAAGTACGTG TCTCCTGGGACCCGGTACATGCCACCATTGACAAGTACGTG < 41bp 0.432529136060145 0.759072101348611 NA NA prediction 0.518144202697223 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175066630 chr1:175066629 nonsynonymous SNV 0.284 1 20 hm7G_associated_SNPs_19829 0 0 0 0 1 TNN chr1:175066553 3'AG 175066553 Downstream 77bp 18527 chr1 92508453 92508453 1 + G T STAD 92508454 + 92508434 92508474 41 ACTGGATTTGAGAGGTTATGGAGAAACAGATGCTCCCATTC ACTGGATTTGAGAGGTTATTGAGAAACAGATGCTCCCATTC < 41bp 0.593610018530533 0.852669724206839 NA NA prediction 0.518119411352612 Functional Gain - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92508454 chr1:92508453 stopgain 1.000 1 20 hm7G_associated_SNPs_19832 0 0 0 0 2 EPHX4 chr1:92508380 3'AG 92508380 Downstream 74bp 18528 chr1 92508453 92508453 1 + G T STAD 92508454 + 92508434 92508474 41 ACTGGATTTGAGAGGTTATGGAGAAACAGATGCTCCCATTC ACTGGATTTGAGAGGTTATTGAGAAACAGATGCTCCCATTC < 41bp 0.593610018530533 0.852669724206839 NA NA prediction 0.518119411352612 Functional Gain - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92508454 chr1:92508453 stopgain 1.000 1 20 hm7G_associated_SNPs_19832 0 0 0 0 2 EPHX4 chr1:92508537 5'GT 92508537 Upstream 85bp 18529 chr2 11702617 11702617 1 + G T UCEC 11702618 + 11702598 11702638 41 GAGTGGACAATGAGGAAGAGGAAGAAGAGGGAGAAGGAGGG GAGTGGACAATGAGGAAGATGAAGAAGAGGGAGAAGGAGGG < 41bp 0.610808605344287 0.869863854534573 NA NA prediction 0.518110498380572 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11702618 chr2:11702617 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19833 0 0 1 0 2 GREB1 chr2:11702589 3'AG 11702589 Downstream 29bp 18530 chr2 11702617 11702617 1 + G T UCEC 11702618 + 11702598 11702638 41 GAGTGGACAATGAGGAAGAGGAAGAAGAGGGAGAAGGAGGG GAGTGGACAATGAGGAAGATGAAGAAGAGGGAGAAGGAGGG < 41bp 0.610808605344287 0.869863854534573 NA NA prediction 0.518110498380572 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11702618 chr2:11702617 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19833 0 0 1 0 2 GREB1 chr2:11702708 5'GT 11702708 Upstream 92bp 18531 chr17 38320408 38320408 1 + G T UCEC 38320409 + 38320389 38320429 41 CCTTCTTTCCTGCAACCACGGGAACTTCGAGGTAGGTATCA CCTTCTTTCCTGCAACCACTGGAACTTCGAGGTAGGTATCA < 41bp 0.427015451207413 0.759044602158207 NA NA prediction 0.518089204316414 Functional Gain - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38320409 chr17:38320408 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_19834 0 0 1 0 1 CASC3 chr17:38320419 5'GT 38320419 Upstream 12bp 18532 chr1 110717490 110717490 1 + G T UCEC 110717491 + 110717471 110717511 41 TGACTCCATCTCGGAGAGTGGGGGCCTCAACTGGAAGATGA TGACTCCATCTCGGAGAGTTGGGGCCTCAACTGGAAGATGA < 41bp 0.421019608672571 0.759041877755577 NA NA prediction 0.518083755511155 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110717491 chr1:110717490 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19835 0 0 0 0 2 SLC6A17 chr1:110717401 3'AG 110717401 Downstream 90bp 18533 chr1 110717490 110717490 1 + G T UCEC 110717491 + 110717471 110717511 41 TGACTCCATCTCGGAGAGTGGGGGCCTCAACTGGAAGATGA TGACTCCATCTCGGAGAGTTGGGGCCTCAACTGGAAGATGA < 41bp 0.421019608672571 0.759041877755577 NA NA prediction 0.518083755511155 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110717491 chr1:110717490 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19835 0 0 0 0 2 SLC6A17 chr1:110717582 5'GT 110717582 Upstream 93bp 18534 chr10 88421092 88421092 1 + G T UCEC 88421093 + 88421073 88421113 41 TGCCAGCCGTCATCGCCAAGGCCTCTGCAATCCACAACCCC TGCCAGCCGTCATCGCCAATGCCTCTGCAATCCACAACCCC < 41bp 0.413246774604054 0.759036648330373 NA NA prediction 0.518073296660745 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88421093 chr10:88421092 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19837 0 0 0 0 2 OPN4 chr10:88421038 3'AG 88421038 Downstream 55bp 18535 chr10 88421092 88421092 1 + G T UCEC 88421093 + 88421073 88421113 41 TGCCAGCCGTCATCGCCAAGGCCTCTGCAATCCACAACCCC TGCCAGCCGTCATCGCCAATGCCTCTGCAATCCACAACCCC < 41bp 0.413246774604054 0.759036648330373 NA NA prediction 0.518073296660745 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88421093 chr10:88421092 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19837 0 0 0 0 2 OPN4 chr10:88421145 5'GT 88421145 Upstream 54bp 18536 chr16 30095999 30095999 1 + G T BLCA 30096000 + 30095980 30096020 41 GCATCAGACACCACAGGCTGGGGCGTGAGCCCCCGAGGAGC GCATCAGACACCACAGGCTTGGGCGTGAGCCCCCGAGGAGC < 41bp 0.621348073529375 0.88037997629174 NA NA prediction 0.51806380552473 Functional Gain - PPP4C ENSG00000149923 CDS Human protein_coding chr16:30096000 chr16:30095999 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_19838 0 0 1 0 1 PPP4C chr16:30095987 3'AG 30095987 Downstream 13bp 18537 chr19 992088 992088 1 + G T LUAD 992089 + 992069 992109 41 GGGACGAGCCGCGCCACGGGGGCCTCACTCTGCGCCTGGGC GGGACGAGCCGCGCCACGGTGGCCTCACTCTGCGCCTGGGC < 41bp 0.413605410749238 0.759024850242101 NA NA prediction 0.518049700484203 Functional Gain - WDR18 ENSG00000065268 CDS Human protein_coding chr19:992089 chr19:992088 synonymous SNV . 0 20 hm7G_associated_SNPs_19840 0 0 1 0 1 WDR18 chr19:992121 5'GT 992121 Upstream 34bp 18538 chrX 151909159 151909159 1 + G T OV 151909160 + 151909140 151909180 41 TTCCCAAGACAACCCAAAAGGGAAAAGGGACCCGTCAAGGA TTCCCAAGACAACCCAAAATGGAAAAGGGACCCGTCAAGGA < 41bp 0.567581665479582 0.826593804621281 NA NA prediction 0.518024278283398 Functional Gain - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151909160 chrX:151909159 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_19842 0 0 0 0 1 CSAG1 chrX:151909139 3'AG 151909139 Downstream 21bp 18539 chr10 133958649 133958649 1 + G T COAD 133958650 + 133958630 133958670 41 CCGAAGTGCAGAGGGCACAGGCGCGGATAGAGGACCTGGAG CCGAAGTGCAGAGGGCACATGCGCGGATAGAGGACCTGGAG < 41bp 0.621707123399166 0.880718976115429 NA NA prediction 0.518023705432525 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133958650 chr10:133958649 nonsynonymous SNV 0.012 4 20 hm7G_associated_SNPs_19843 0 0 0 0 2 JAKMIP3 chr10:133958611 3'AG 133958611 Downstream 39bp 18540 chr10 133958649 133958649 1 + G T COAD 133958650 + 133958630 133958670 41 CCGAAGTGCAGAGGGCACAGGCGCGGATAGAGGACCTGGAG CCGAAGTGCAGAGGGCACATGCGCGGATAGAGGACCTGGAG < 41bp 0.621707123399166 0.880718976115429 NA NA prediction 0.518023705432525 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133958650 chr10:133958649 nonsynonymous SNV 0.012 4 20 hm7G_associated_SNPs_19843 0 0 0 0 2 JAKMIP3 chr10:133958694 5'GT 133958694 Upstream 46bp 18541 chr19 13941087 13941087 1 + G T UCEC 13941088 + 13941068 13941108 41 CTACCATCGTGGCAGTGACGGGCACCACACACGCCACTCTG CTACCATCGTGGCAGTGACTGGCACCACACACGCCACTCTG < 41bp 0.433667472820871 0.75900964593746 NA NA prediction 0.51801929187492 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13941088 chr19:13941087 synonymous SNV . 0 20 hm7G_associated_SNPs_19844 0 0 1 0 1 ZSWIM4 chr19:13941005 3'AG 13941005 Downstream 83bp 18542 chr19 32968497 32968497 1 + G T SARC 32968498 + 32968478 32968518 41 CCGGAGTCAAGCTGTGCACGGGAAGGACCCTAACCAACCAC CCGGAGTCAAGCTGTGCACTGGAAGGACCCTAACCAACCAC < 41bp 0.424063536363331 0.759009593782062 NA NA prediction 0.518019187564124 Functional Gain - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32968498 chr19:32968497 synonymous SNV . 0 20 hm7G_associated_SNPs_19845 0 0 1 0 2 DPY19L3 chr19:32968428 3'AG 32968428 Downstream 70bp 18543 chr19 32968497 32968497 1 + G T SARC 32968498 + 32968478 32968518 41 CCGGAGTCAAGCTGTGCACGGGAAGGACCCTAACCAACCAC CCGGAGTCAAGCTGTGCACTGGAAGGACCCTAACCAACCAC < 41bp 0.424063536363331 0.759009593782062 NA NA prediction 0.518019187564124 Functional Gain - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32968498 chr19:32968497 synonymous SNV . 0 20 hm7G_associated_SNPs_19845 0 0 1 0 2 DPY19L3 chr19:32968560 5'GT 32968560 Upstream 64bp 18544 chr1 183208668 183208668 1 + G T COAD 183208669 + 183208649 183208689 41 CAAAGAATGGGGCCGGGGAGGCCCTGGAAATCTCCAGTGAG CAAAGAATGGGGCCGGGGATGCCCTGGAAATCTCCAGTGAG < 41bp 0.42495905882516 0.759007416879281 NA NA prediction 0.518014833758563 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183208669 chr1:183208668 nonsynonymous SNV 0.826 3 20 hm7G_associated_SNPs_19847 0 0 0 0 1 LAMC2 chr1:183208698 5'GT 183208698 Upstream 31bp 18545 chr13 113907476 113907476 1 + G T LUAD 113907477 + 113907457 113907497 41 TTCAGTGGCAAACTACTTTGGGACATGCTGTTTTAAAAGCG TTCAGTGGCAAACTACTTTTGGACATGCTGTTTTAAAAGCG < 41bp 0.427450402651036 0.758984228446284 NA NA prediction 0.517968456892568 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907477 chr13:113907476 nonsynonymous SNV 0.373 2 20 hm7G_associated_SNPs_19849 0 0 1 0 2 CUL4A chr13:113907396 3'AG 113907396 Downstream 81bp 18546 chr13 113907476 113907476 1 + G T LUAD 113907477 + 113907457 113907497 41 TTCAGTGGCAAACTACTTTGGGACATGCTGTTTTAAAAGCG TTCAGTGGCAAACTACTTTTGGACATGCTGTTTTAAAAGCG < 41bp 0.427450402651036 0.758984228446284 NA NA prediction 0.517968456892568 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113907477 chr13:113907476 nonsynonymous SNV 0.373 2 20 hm7G_associated_SNPs_19849 0 0 1 0 2 CUL4A chr13:113907509 5'GT 113907509 Upstream 34bp 18547 chr3 170016829 170016829 1 + G T LUAD 170016830 + 170016810 170016850 41 TTTAAACCAAATATTTCTGGGGAATTTGGTTTGGACAACTT TTTAAACCAAATATTTCTGTGGAATTTGGTTTGGACAACTT < 41bp 0.577826485190014 0.836810291182274 NA NA prediction 0.51796761198452 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170016830 chr3:170016829 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19850 0 0 0 0 2 PRKCI chr3:170016783 3'AG 170016783 Downstream 47bp 18548 chr3 170016829 170016829 1 + G T LUAD 170016830 + 170016810 170016850 41 TTTAAACCAAATATTTCTGGGGAATTTGGTTTGGACAACTT TTTAAACCAAATATTTCTGTGGAATTTGGTTTGGACAACTT < 41bp 0.577826485190014 0.836810291182274 NA NA prediction 0.51796761198452 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170016830 chr3:170016829 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_19850 0 0 0 0 2 PRKCI chr3:170016898 5'GT 170016898 Upstream 70bp 18549 chr6 84644422 84644422 1 + G T LUAD 84644423 + 84644403 84644443 41 CATCTTCAAGTGCCCATTGGGCAACATGTTTACCTCAAGCT CATCTTCAAGTGCCCATTGTGCAACATGTTTACCTCAAGCT < 41bp 0.600418723357698 0.859375255927593 NA NA prediction 0.517913065139789 Functional Gain - CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84644423 chr6:84644422 nonsynonymous SNV 0.937 5 20 hm7G_associated_SNPs_19851 0 0 1 0 1 CYB5R4 chr6:84644454 5'GT 84644454 Upstream 33bp 18550 chr7 141734580 141734580 1 + G T SARC 141734581 + 141734561 141734601 41 GGAGACAACACTGCCACCTGGGATGACCTGAGATGGTCCAT GGAGACAACACTGCCACCTTGGATGACCTGAGATGGTCCAT < 41bp 0.423003231232237 0.758955937186312 NA NA prediction 0.517911874372623 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141734581 chr7:141734580 nonsynonymous SNV 0.377 5 20 hm7G_associated_SNPs_19852 0 0 0 0 1 MGAM chr7:141734641 5'GT 141734641 Upstream 62bp 18551 chr17 9086276 9086276 1 + G T UCEC 9086277 + 9086257 9086297 41 CTGCAGCCAGCAGCGTGGAGGAGCCTGAAGGTAAACGGCCC CTGCAGCCAGCAGCGTGGATGAGCCTGAAGGTAAACGGCCC < 41bp 0.432097838696544 0.758911480348686 NA NA prediction 0.517822960697372 Functional Gain - NTN1 ENSG00000065320 CDS Human protein_coding chr17:9086277 chr17:9086276 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_19854 0 0 0 0 2 NTN1 chr17:9086233 3'AG 9086233 Downstream 44bp 18552 chr17 9086276 9086276 1 + G T UCEC 9086277 + 9086257 9086297 41 CTGCAGCCAGCAGCGTGGAGGAGCCTGAAGGTAAACGGCCC CTGCAGCCAGCAGCGTGGATGAGCCTGAAGGTAAACGGCCC < 41bp 0.432097838696544 0.758911480348686 NA NA prediction 0.517822960697372 Functional Gain - NTN1 ENSG00000065320 CDS Human protein_coding chr17:9086277 chr17:9086276 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_19854 0 0 0 0 2 NTN1 chr17:9086286 5'GT 9086286 Upstream 11bp 18553 chr19 54942319 54942319 1 + G T UCEC 54942320 + 54942300 54942340 41 GACTCTGAATGTGACAGAAGGAAATTTCCACCAGTTGGTGG GACTCTGAATGTGACAGAATGAAATTTCCACCAGTTGGTGG < 41bp 0.593793567464982 0.85269062240053 NA NA prediction 0.517794109871096 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942320 chr19:54942319 stopgain 0.999 1 20 hm7G_associated_SNPs_19855 0 0 0 0 2 TTYH1 chr19:54942277 3'AG 54942277 Downstream 43bp 18554 chr19 54942319 54942319 1 + G T UCEC 54942320 + 54942300 54942340 41 GACTCTGAATGTGACAGAAGGAAATTTCCACCAGTTGGTGG GACTCTGAATGTGACAGAATGAAATTTCCACCAGTTGGTGG < 41bp 0.593793567464982 0.85269062240053 NA NA prediction 0.517794109871096 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942320 chr19:54942319 stopgain 0.999 1 20 hm7G_associated_SNPs_19855 0 0 0 0 2 TTYH1 chr19:54942369 5'GT 54942369 Upstream 51bp 18555 chr11 66407215 66407215 1 + G T GBM 66407216 + 66407196 66407236 41 TCATCGGAAACCTGCCCCGGGAGGCTACAGAGCAGGAGATT TCATCGGAAACCTGCCCCGTGAGGCTACAGAGCAGGAGATT < 41bp 0.612616229071419 0.871509727739011 NA NA prediction 0.517786997335184 Functional Gain - RBM4 ENSG00000173933;ENSG00000248643 CDS Human protein_coding chr11:66407216 chr11:66407215 stopgain . 0 20 hm7G_associated_SNPs_19856 0 0 1 0 1 RBM4 chr11:66407171 3'AG 66407171 Downstream 45bp 18556 chr12 66221815 66221815 1 + G T LUAD 66221816 + 66221796 66221836 41 CCCTCTCCTAAGAGACCCAGGGGAAGACCCAAAGGCAGCAA CCCTCTCCTAAGAGACCCATGGGAAGACCCAAAGGCAGCAA < 41bp 0.44144899245095 0.758891097957252 NA NA prediction 0.517782195914504 Functional Gain - HMGA2 ENSG00000149948 CDS Human protein_coding chr12:66221816 chr12:66221815 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19857 0 0 1 0 1 HMGA2 chr12:66221781 3'AG 66221781 Downstream 35bp 18557 chr4 99214614 99214614 1 + G T UCEC 99214615 + 99214595 99214635 41 CAGCTGTTGACAAGACTGAGGATAGTTTAGAAGGATGCTTG CAGCTGTTGACAAGACTGATGATAGTTTAGAAGGATGCTTG < 41bp 0.604128631977195 0.86301493224971 NA NA prediction 0.51777260054503 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99214615 chr4:99214614 nonsynonymous SNV 0.948 0 20 hm7G_associated_SNPs_19858 0 0 0 0 3 RAP1GDS1 chr4:99214556 3'AG 99214556 Downstream 59bp 18558 chr4 99214614 99214614 1 + G T UCEC 99214615 + 99214595 99214635 41 CAGCTGTTGACAAGACTGAGGATAGTTTAGAAGGATGCTTG CAGCTGTTGACAAGACTGATGATAGTTTAGAAGGATGCTTG < 41bp 0.604128631977195 0.86301493224971 NA NA prediction 0.51777260054503 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99214615 chr4:99214614 nonsynonymous SNV 0.948 0 20 hm7G_associated_SNPs_19858 0 0 0 0 3 RAP1GDS1 chr4:99214559 3'AG 99214559 Downstream 56bp 18559 chr4 99214614 99214614 1 + G T UCEC 99214615 + 99214595 99214635 41 CAGCTGTTGACAAGACTGAGGATAGTTTAGAAGGATGCTTG CAGCTGTTGACAAGACTGATGATAGTTTAGAAGGATGCTTG < 41bp 0.604128631977195 0.86301493224971 NA NA prediction 0.51777260054503 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99214615 chr4:99214614 nonsynonymous SNV 0.948 0 20 hm7G_associated_SNPs_19858 0 0 0 0 3 RAP1GDS1 chr4:99214666 5'GT 99214666 Upstream 53bp 18560 chr4 57357651 57357651 1 + G T ACC 57357652 + 57357632 57357672 41 CTCTAAAAGTAGATGTTGAGGCTCTTGAAAATTCTGCTGGT CTCTAAAAGTAGATGTTGATGCTCTTGAAAATTCTGCTGGT < 41bp 0.59476203848244 0.853643596713622 NA NA prediction 0.517763116462364 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57357652 chr4:57357651 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_19860 0 0 1 0 1 SRP72 chr4:57357597 3'AG 57357597 Downstream 55bp 18561 chr3 9783003 9783003 1 + G T TGCT 9783004 + 9782984 9783024 41 CTCTACAGAGAGATTCTGAGGATAAGAACTGGGCCCTTAAA CTCTACAGAGAGATTCTGATGATAAGAACTGGGCCCTTAAA < 41bp 0.610663196712709 0.869527688804682 NA NA prediction 0.517728984183947 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9783004 chr3:9783003 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_19862 0 0 1 0 1 BRPF1 chr3:9782992 3'AG 9782992 Downstream 12bp 18562 chr6 35773816 35773816 1 + G T LUAD 35773817 + 35773797 35773837 41 TGTTCTTCATCTGCAACACGGCCACAGTCTATAAGATCTGT TGTTCTTCATCTGCAACACTGCCACAGTCTATAAGATCTGT < 41bp 0.594261610119255 0.853124929264608 NA NA prediction 0.517726638290706 Functional Gain - LHFPL5 ENSG00000197753 CDS Human protein_coding chr6:35773817 chr6:35773816 synonymous SNV . 0 20 hm7G_associated_SNPs_19863 0 0 0 0 1 LHFPL5 chr6:35773859 5'GT 35773859 Upstream 44bp 18563 chr8 26481792 26481792 1 + G T UCEC 26481793 + 26481773 26481813 41 AGTGGCATAAGGGCATCCAGGAGGAGATGGAAGCGCTTGTG AGTGGCATAAGGGCATCCATGAGGAGATGGAAGCGCTTGTG < 41bp 0.613270162978498 0.872122337911749 NA NA prediction 0.517704349866503 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26481793 chr8:26481792 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19866 0 0 1 0 1 DPYSL2 chr8:26481823 5'GT 26481823 Upstream 32bp 18564 chr10 97599557 97599557 1 + G T UCEC 97599558 + 97599538 97599578 41 CATCAAGTAGAAGAATGCAGGGTTAAAGGTAAGATGAAGAC CATCAAGTAGAAGAATGCATGGTTAAAGGTAAGATGAAGAC < 41bp 0.444493759246995 0.758841316992623 NA NA prediction 0.517682633985247 Functional Gain - ENTPD1 ENSG00000138185 CDS Human protein_coding chr10:97599558 chr10:97599557 nonsynonymous SNV 0.758 1 20 hm7G_associated_SNPs_19868 0 0 0 0 1 ENTPD1 chr10:97599565 5'GT 97599565 Upstream 9bp 18565 chr3 184298236 184298236 1 + G T LUAD 184298237 + 184298217 184298257 41 CAGCTGGTGGGCATGTTGCGGGGCATTGCTGCCGGCATGAA CAGCTGGTGGGCATGTTGCTGGGCATTGCTGCCGGCATGAA < 41bp 0.609497540459514 0.868333262489924 NA NA prediction 0.517671444060821 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184298237 chr3:184298236 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_19870 0 0 0 0 1 EPHB3 chr3:184298190 3'AG 184298190 Downstream 47bp 18566 chr1 183206503 183206503 1 + G T LGG 183206504 + 183206484 183206524 41 TAGGTGGAAGAAGCAAAGAGGATCAAACAAAAAGCGGATTC TAGGTGGAAGAAGCAAAGATGATCAAACAAAAAGCGGATTC < 41bp 0.599945781371675 0.858762001219719 NA NA prediction 0.517632439696089 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183206504 chr1:183206503 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_19874 0 0 0 0 1 LAMC2 chr1:183206487 3'AG 183206487 Downstream 17bp 18567 chr17 40842128 40842128 1 + G T STAD 40842129 + 40842109 40842149 41 TGTATAAGGAATCCTGTGAGGCTTATCGGCTCAGTGGGAAA TGTATAAGGAATCCTGTGATGCTTATCGGCTCAGTGGGAAA < 41bp 0.619847180651731 0.878628929915646 NA NA prediction 0.517563498527831 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40842129 chr17:40842128 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_19877 0 0 0 0 2 CNTNAP1 chr17:40842106 3'AG 40842106 Downstream 23bp 18568 chr17 40842128 40842128 1 + G T STAD 40842129 + 40842109 40842149 41 TGTATAAGGAATCCTGTGAGGCTTATCGGCTCAGTGGGAAA TGTATAAGGAATCCTGTGATGCTTATCGGCTCAGTGGGAAA < 41bp 0.619847180651731 0.878628929915646 NA NA prediction 0.517563498527831 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40842129 chr17:40842128 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_19877 0 0 0 0 2 CNTNAP1 chr17:40842225 5'GT 40842225 Upstream 98bp 18569 chr8 33346310 33346310 1 + G T LUAD 33346311 + 33346291 33346331 41 CTTTTCCTCGGCGTCTCTGGGAACGGGTAAGCCTTACAACA CTTTTCCTCGGCGTCTCTGTGAACGGGTAAGCCTTACAACA < 41bp 0.589311600139217 0.848093141328099 NA NA prediction 0.517563082377764 Functional Gain - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33346311 chr8:33346310 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19878 0 0 1 0 2 MAK16 chr8:33346252 3'AG 33346252 Downstream 59bp 18570 chr8 33346310 33346310 1 + G T LUAD 33346311 + 33346291 33346331 41 CTTTTCCTCGGCGTCTCTGGGAACGGGTAAGCCTTACAACA CTTTTCCTCGGCGTCTCTGTGAACGGGTAAGCCTTACAACA < 41bp 0.589311600139217 0.848093141328099 NA NA prediction 0.517563082377764 Functional Gain - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33346311 chr8:33346310 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19878 0 0 1 0 2 MAK16 chr8:33346316 5'GT 33346316 Upstream 7bp 18571 chr16 18602570 18602570 1 + G T LUAD 18602571 + 18602551 18602591 41 TCCATTCTACCTTCCTCCTGGGGACCCTCAGCCTCGTCATC TCCATTCTACCTTCCTCCTTGGGACCCTCAGCCTCGTCATC < 41bp 0.449381677500548 0.758762860285526 NA NA prediction 0.517525720571052 Functional Gain - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18602571 chr16:18602570 . . 0 20 hm7G_associated_SNPs_19882 0 0 0 0 1 ABCC6P1 chr16:18602629 5'GT 18602629 Upstream 60bp 18572 chr6 43573029 43573029 1 + G T LGG 43573030 + 43573010 43573050 41 AATTAGCCCAGGAACTAGAGGAGAGACTGACTAAAGACCGA AATTAGCCCAGGAACTAGATGAGAGACTGACTAAAGACCGA < 41bp 0.43420003912068 0.758749590077055 NA NA prediction 0.51749918015411 Functional Gain - POLH ENSG00000170734 CDS Human protein_coding chr6:43573030 chr6:43573029 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19884 0 0 1 0 2 POLH chr6:43572991 3'AG 43572991 Downstream 39bp 18573 chr6 43573029 43573029 1 + G T LGG 43573030 + 43573010 43573050 41 AATTAGCCCAGGAACTAGAGGAGAGACTGACTAAAGACCGA AATTAGCCCAGGAACTAGATGAGAGACTGACTAAAGACCGA < 41bp 0.43420003912068 0.758749590077055 NA NA prediction 0.51749918015411 Functional Gain - POLH ENSG00000170734 CDS Human protein_coding chr6:43573030 chr6:43573029 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19884 0 0 1 0 2 POLH chr6:43573056 5'GT 43573056 Upstream 28bp 18574 chr19 19212626 19212626 1 + G T SARC 19212627 + 19212607 19212647 41 GCTCAGCTCCCTGCTGTCTGGGGCCCTGGCTGGTGCCCTTG GCTCAGCTCCCTGCTGTCTTGGGCCCTGGCTGGTGCCCTTG < 41bp 0.630061717340975 0.888803572286517 NA NA prediction 0.517483709891084 Functional Gain - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19212627 chr19:19212626 nonsynonymous SNV 0.970 5 20 hm7G_associated_SNPs_19885 0 0 1 0 1 SLC25A42 chr19:19212695 5'GT 19212695 Upstream 70bp 18575 chr4 178261010 178261010 1 + G T UCEC 178261011 + 178260991 178261031 41 TTCAGCATTCTCTTTTACAGGGTAAGAGCAAAATTTTTCAA TTCAGCATTCTCTTTTACATGGTAAGAGCAAAATTTTTCAA < 41bp 0.462350618686916 0.758741053421098 NA NA prediction 0.517482106842196 Functional Gain - NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178261011 chr4:178261010 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19886 0 0 0 0 1 NEIL3 chr4:178260937 3'AG 178260937 Downstream 74bp 18576 chr16 14026137 14026137 1 + G T LUAD 14026138 + 14026118 14026158 41 AAAATGGAAATTAAAGAAGGGGAAGGTATCTTGTGGGGTTA AAAATGGAAATTAAAGAAGTGGAAGGTATCTTGTGGGGTTA < 41bp 0.569817419909531 0.828557710700402 NA NA prediction 0.517480581581742 Functional Gain - ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14026138 chr16:14026137 nonsynonymous SNV 0.068 0 20 hm7G_associated_SNPs_19887 0 0 1 0 1 ERCC4 chr16:14026142 5'GT 14026142 Upstream 6bp 18577 chr20 33586605 33586605 1 + G T UCEC 33586606 + 33586586 33586626 41 AACACGAGGAGGAGGCTGAGGCCCAGGCTGAGCTGCAGCGG AACACGAGGAGGAGGCTGATGCCCAGGCTGAGCTGCAGCGG < 41bp 0.617190687075908 0.875925319479469 NA NA prediction 0.517469264807121 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33586606 chr20:33586605 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_19889 0 0 0 0 1 MYH7B chr20:33586522 3'AG 33586522 Downstream 84bp 18578 chr18 44603773 44603773 1 + G T UCEC 44603774 + 44603754 44603794 41 CAGAGTTACTGGTGCAGATGGATGGGCTGGCACGCTCAGAA CAGAGTTACTGGTGCAGATTGATGGGCTGGCACGCTCAGAA < 41bp 0.611026152647421 0.869757588070003 NA NA prediction 0.517462870845164 Functional Gain - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44603774 chr18:44603773 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19890 0 0 0 0 2 KATNAL2 chr18:44603722 3'AG 44603722 Downstream 52bp 18579 chr18 44603773 44603773 1 + G T UCEC 44603774 + 44603754 44603794 41 CAGAGTTACTGGTGCAGATGGATGGGCTGGCACGCTCAGAA CAGAGTTACTGGTGCAGATTGATGGGCTGGCACGCTCAGAA < 41bp 0.611026152647421 0.869757588070003 NA NA prediction 0.517462870845164 Functional Gain - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44603774 chr18:44603773 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19890 0 0 0 0 2 KATNAL2 chr18:44603832 5'GT 44603832 Upstream 60bp 18580 chr11 101918285 101918285 1 + G T UCEC 101918286 + 101918266 101918306 41 TCCAGTCTCTGAGCTCTAAGGAGATCACCAGCCGGCTCCGC TCCAGTCTCTGAGCTCTAATGAGATCACCAGCCGGCTCCGC < 41bp 0.588062688530216 0.846788574029434 NA NA prediction 0.517451770998437 Functional Gain - C11orf70 ENSG00000137691 CDS Human protein_coding chr11:101918286 chr11:101918285 nonsynonymous SNV 0.087 0 20 hm7G_associated_SNPs_19891 0 0 1 0 1 C11orf70 chr11:101918311 5'GT 101918311 Upstream 27bp 18581 chr5 31317976 31317976 1 + G T SARC 31317977 + 31317957 31317997 41 AGGCGCTCATCCACCCCACGGGACTGAGCACGGGGGCTCTG AGGCGCTCATCCACCCCACTGGACTGAGCACGGGGGCTCTG < 41bp 0.421790632335836 0.758721997088643 NA NA prediction 0.517443994177287 Functional Gain - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31317977 chr5:31317976 synonymous SNV . 0 20 hm7G_associated_SNPs_19892 0 0 0 0 1 CDH6 chr5:31318031 5'GT 31318031 Upstream 56bp 18582 chr1 11867208 11867208 1 + G T UCEC 11867209 + 11867189 11867229 41 CCATCCTTGGAGAAACACAGGAGGAGGAGGATGAGATTCTT CCATCCTTGGAGAAACACATGAGGAGGAGGATGAGATTCTT < 41bp 0.60607762459645 0.86478155505646 NA NA prediction 0.51740786092002 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11867209 chr1:11867208 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_19896 0 0 1 0 2 CLCN6 chr1:11867188 3'AG 11867188 Downstream 21bp 18583 chr1 11867208 11867208 1 + G T UCEC 11867209 + 11867189 11867229 41 CCATCCTTGGAGAAACACAGGAGGAGGAGGATGAGATTCTT CCATCCTTGGAGAAACACATGAGGAGGAGGATGAGATTCTT < 41bp 0.60607762459645 0.86478155505646 NA NA prediction 0.51740786092002 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11867209 chr1:11867208 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_19896 0 0 1 0 2 CLCN6 chr1:11867247 5'GT 11867247 Upstream 40bp 18584 chr11 61545865 61545865 1 + G T GBM 61545866 + 61545846 61545886 41 CCCCAGGTGTCATCGCTCAGGAGGTGAAGGAGATCTTGCCT CCCCAGGTGTCATCGCTCATGAGGTGAAGGAGATCTTGCCT < 41bp 0.416869610457625 0.758701993653316 NA NA prediction 0.517403987306632 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545866 chr11:61545865 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19897 0 0 1 0 2 MYRF chr11:61545852 3'AG 61545852 Downstream 14bp 18585 chr11 61545865 61545865 1 + G T GBM 61545866 + 61545846 61545886 41 CCCCAGGTGTCATCGCTCAGGAGGTGAAGGAGATCTTGCCT CCCCAGGTGTCATCGCTCATGAGGTGAAGGAGATCTTGCCT < 41bp 0.416869610457625 0.758701993653316 NA NA prediction 0.517403987306632 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545866 chr11:61545865 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19897 0 0 1 0 2 MYRF chr11:61545961 5'GT 61545961 Upstream 97bp 18586 chr11 120989112 120989112 1 + G T LUSC 120989113 + 120989093 120989133 41 ATGAGATCTACTGCCAGGAGGCTTCCTGTAGCCCCTACGAG ATGAGATCTACTGCCAGGATGCTTCCTGTAGCCCCTACGAG < 41bp 0.415791791332371 0.758686025434875 NA NA prediction 0.517372050869749 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120989113 chr11:120989112 nonsynonymous SNV 0.978 0 20 hm7G_associated_SNPs_19898 0 0 0 0 1 TECTA chr11:120989015 3'AG 120989015 Downstream 98bp 18587 chr4 111474593 111474593 1 + G T LUAD 111474594 + 111474574 111474614 41 AATTGGATACAACTCAACTGGGACTATCTAGTCAACAGGTG AATTGGATACAACTCAACTTGGACTATCTAGTCAACAGGTG < 41bp 0.432997186372195 0.7586735427398 NA NA prediction 0.517347085479601 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111474594 chr4:111474593 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_19899 0 0 0 0 1 ENPEP chr4:111474611 5'GT 111474611 Upstream 19bp 18588 chr5 131729923 131729923 1 + G T GBM 131729924 + 131729904 131729944 41 CACAAGGATGTTAAAAGATGGTCAAGAAAGGCCCACAATCC CACAAGGATGTTAAAAGATTGTCAAGAAAGGCCCACAATCC < 41bp 0.563124581398512 0.821776574111977 NA NA prediction 0.51730398542693 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131729924 chr5:131729923 nonsynonymous SNV 0.776 2 20 hm7G_associated_SNPs_19902 0 0 0 0 1 SLC22A5 chr5:131729877 3'AG 131729877 Downstream 47bp 18589 chrX 149912838 149912838 1 + G T COAD 149912839 + 149912819 149912859 41 CTGTTTCTGTTCAGCGAGTGGGCCATGGTAATGACAACCAT CTGTTTCTGTTCAGCGAGTTGGCCATGGTAATGACAACCAT < 41bp 0.60250168665584 0.86114772294594 NA NA prediction 0.5172920725802 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149912839 chrX:149912838 synonymous SNV . 0 20 hm7G_associated_SNPs_19903 0 0 1 0 2 MTMR1 chrX:149912833 3'AG 149912833 Downstream 6bp 18590 chrX 149912838 149912838 1 + G T COAD 149912839 + 149912819 149912859 41 CTGTTTCTGTTCAGCGAGTGGGCCATGGTAATGACAACCAT CTGTTTCTGTTCAGCGAGTTGGCCATGGTAATGACAACCAT < 41bp 0.60250168665584 0.86114772294594 NA NA prediction 0.5172920725802 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149912839 chrX:149912838 synonymous SNV . 0 20 hm7G_associated_SNPs_19903 0 0 1 0 2 MTMR1 chrX:149912925 5'GT 149912925 Upstream 88bp 18591 chr17 52981152 52981152 1 + G T UCEC 52981153 + 52981133 52981173 41 AATTAACACTACCCAGGATGGGTGAGTACAGCATGGTTTCC AATTAACACTACCCAGGATTGGTGAGTACAGCATGGTTTCC < 41bp 0.588365757766648 0.84699260187829 NA NA prediction 0.517253688223285 Functional Gain - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52981153 chr17:52981152 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_19906 0 0 1 0 3 TOM1L1 chr17:52981069 3'AG 52981069 Downstream 84bp 18592 chr17 52981152 52981152 1 + G T UCEC 52981153 + 52981133 52981173 41 AATTAACACTACCCAGGATGGGTGAGTACAGCATGGTTTCC AATTAACACTACCCAGGATTGGTGAGTACAGCATGGTTTCC < 41bp 0.588365757766648 0.84699260187829 NA NA prediction 0.517253688223285 Functional Gain - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52981153 chr17:52981152 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_19906 0 0 1 0 3 TOM1L1 chr17:52981074 3'AG 52981074 Downstream 79bp 18593 chr17 52981152 52981152 1 + G T UCEC 52981153 + 52981133 52981173 41 AATTAACACTACCCAGGATGGGTGAGTACAGCATGGTTTCC AATTAACACTACCCAGGATTGGTGAGTACAGCATGGTTTCC < 41bp 0.588365757766648 0.84699260187829 NA NA prediction 0.517253688223285 Functional Gain - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52981153 chr17:52981152 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_19906 0 0 1 0 3 TOM1L1 chr17:52981153 5'GT 52981153 Upstream 2bp 18594 chr12 10133266 10133266 1 + G T UCEC 10133267 + 10133247 10133287 41 ATGATGTCCAAACATGGCAGGAGAGTAAAATGGCCTGTGCT ATGATGTCCAAACATGGCATGAGAGTAAAATGGCCTGTGCT < 41bp 0.58887587214385 0.847501481889508 NA NA prediction 0.517251219491316 Functional Gain - CLEC12A ENSG00000172322 CDS Human protein_coding chr12:10133267 chr12:10133266 nonsynonymous SNV 0.766 3 20 hm7G_associated_SNPs_19907 0 0 0 0 2 CLEC12A chr12:10133181 3'AG 10133181 Downstream 86bp 18595 chr12 10133266 10133266 1 + G T UCEC 10133267 + 10133247 10133287 41 ATGATGTCCAAACATGGCAGGAGAGTAAAATGGCCTGTGCT ATGATGTCCAAACATGGCATGAGAGTAAAATGGCCTGTGCT < 41bp 0.58887587214385 0.847501481889508 NA NA prediction 0.517251219491316 Functional Gain - CLEC12A ENSG00000172322 CDS Human protein_coding chr12:10133267 chr12:10133266 nonsynonymous SNV 0.766 3 20 hm7G_associated_SNPs_19907 0 0 0 0 2 CLEC12A chr12:10133332 5'GT 10133332 Upstream 67bp 18596 chr1 44458260 44458260 1 + G T STAD 44458261 + 44458241 44458281 41 TTTGCCTTGGAGGAGCCCAGGTGTGATTTGCCAGAACAGGA TTTGCCTTGGAGGAGCCCATGTGTGATTTGCCAGAACAGGA < 41bp 0.430705252334149 0.758615890877936 NA NA prediction 0.517231781755872 Functional Gain - CCDC24 ENSG00000159214 CDS Human protein_coding chr1:44458261 chr1:44458260 nonsynonymous SNV 0.171 3 20 hm7G_associated_SNPs_19909 0 0 0 0 2 CCDC24 chr1:44458195 3'AG 44458195 Downstream 66bp 18597 chr1 44458260 44458260 1 + G T STAD 44458261 + 44458241 44458281 41 TTTGCCTTGGAGGAGCCCAGGTGTGATTTGCCAGAACAGGA TTTGCCTTGGAGGAGCCCATGTGTGATTTGCCAGAACAGGA < 41bp 0.430705252334149 0.758615890877936 NA NA prediction 0.517231781755872 Functional Gain - CCDC24 ENSG00000159214 CDS Human protein_coding chr1:44458261 chr1:44458260 nonsynonymous SNV 0.171 3 20 hm7G_associated_SNPs_19909 0 0 0 0 2 CCDC24 chr1:44458311 5'GT 44458311 Upstream 52bp 18598 chr8 99139948 99139948 1 + G T LUSC 99139949 + 99139929 99139969 41 AAAGGGAGGATGGAAAGCAGGTCCCGAGGGCACGTCTCAGG AAAGGGAGGATGGAAAGCATGTCCCGAGGGCACGTCTCAGG < 41bp 0.608454901565359 0.867045030422467 NA NA prediction 0.517180257714216 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99139949 chr8:99139948 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_19913 0 0 0 0 1 POP1 chr8:99139990 5'GT 99139990 Upstream 43bp 18599 chr10 26994282 26994282 1 + G T LUSC 26994283 + 26994263 26994303 41 CACCGATCCTTTCAAACTCGGTTGGAGAGACTTGAAAGGTC CACCGATCCTTTCAAACTCTGTTGGAGAGACTTGAAAGGTC < 41bp 0.590377255507494 0.848958671666686 NA NA prediction 0.517162832318384 Functional Gain - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994283 chr10:26994282 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_19914 0 0 0 0 2 PDSS1 chr10:26994215 3'AG 26994215 Downstream 68bp 18600 chr10 26994282 26994282 1 + G T LUSC 26994283 + 26994263 26994303 41 CACCGATCCTTTCAAACTCGGTTGGAGAGACTTGAAAGGTC CACCGATCCTTTCAAACTCTGTTGGAGAGACTTGAAAGGTC < 41bp 0.590377255507494 0.848958671666686 NA NA prediction 0.517162832318384 Functional Gain - PDSS1 ENSG00000148459 CDS Human protein_coding chr10:26994283 chr10:26994282 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_19914 0 0 0 0 2 PDSS1 chr10:26994323 5'GT 26994323 Upstream 42bp 18601 chr9 136509385 136509385 1 + G T LUAD 136509386 + 136509366 136509406 41 CCTTGCCTTCGGGGGTCCAGGGTCCTCCAGATATCTCCGCC CCTTGCCTTCGGGGGTCCATGGTCCTCCAGATATCTCCGCC < 41bp 0.6251194634783 0.883693145505358 NA NA prediction 0.517147364054117 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136509386 chr9:136509385 nonsynonymous SNV 0.013 4 20 hm7G_associated_SNPs_19915 0 0 0 0 2 DBH chr9:136509340 3'AG 136509340 Downstream 46bp 18602 chr9 136509385 136509385 1 + G T LUAD 136509386 + 136509366 136509406 41 CCTTGCCTTCGGGGGTCCAGGGTCCTCCAGATATCTCCGCC CCTTGCCTTCGGGGGTCCATGGTCCTCCAGATATCTCCGCC < 41bp 0.6251194634783 0.883693145505358 NA NA prediction 0.517147364054117 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136509386 chr9:136509385 nonsynonymous SNV 0.013 4 20 hm7G_associated_SNPs_19915 0 0 0 0 2 DBH chr9:136509442 5'GT 136509442 Upstream 58bp 18603 chr4 187209645 187209645 1 + G T UCEC 187209646 + 187209626 187209666 41 TGTCCTGCAAACACAATGAGGTCTGGCATCTGGTAGGCATC TGTCCTGCAAACACAATGATGTCTGGCATCTGGTAGGCATC < 41bp 0.455208129482258 0.758553915754629 NA NA prediction 0.517107831509257 Functional Gain - F11 ENSG00000088926 CDS Human protein_coding chr4:187209646 chr4:187209645 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_19916 0 0 1 0 1 F11 chr4:187209607 3'AG 187209607 Downstream 39bp 18604 chr16 31045834 31045834 1 + G T HNSC 31045835 + 31045815 31045855 41 GAGATCAAACAGCTGGGGAGGGAGATCCGCCTGCAGCTGAA GAGATCAAACAGCTGGGGATGGAGATCCGCCTGCAGCTGAA < 41bp 0.614037576527965 0.872586399648233 NA NA prediction 0.517097646240535 Functional Gain - STX4 ENSG00000103496 CDS Human protein_coding chr16:31045835 chr16:31045834 nonsynonymous SNV 0.967 3 20 hm7G_associated_SNPs_19917 0 0 1 0 1 STX4 chr16:31045783 3'AG 31045783 Downstream 52bp 18605 chr17 48183306 48183306 1 + G T KIRC 48183307 + 48183287 48183327 41 ACGACGTGGTGCCCACCATGGCACAAGGCGTGCTTGAGTAC ACGACGTGGTGCCCACCATTGCACAAGGCGTGCTTGAGTAC < 41bp 0.627705937191785 0.886251407543765 NA NA prediction 0.517090940703959 Functional Gain - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48183307 chr17:48183306 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19918 0 0 0 0 1 PDK2 chr17:48183249 3'AG 48183249 Downstream 58bp 18606 chr1 226789759 226789759 1 + G T rs188971820 226789760 + 226789740 226789780 41 GAGCCCACGGGAGCCGCTGGGGAGATCCAGGGGGGCCCTGT GAGCCCACGGGAGCCGCTGTGGAGATCCAGGGGGGCCCTGT < 41bp 0.463498833818162 0.758542261062481 NA NA prediction 0.517084522124962 Functional Gain - STUM ENSG00000203685 UTR3 Human protein_coding chr1:226789760 chr1:226789759 . . 0 20 hm7G_associated_SNPs_19919 0 0 0 0 1 STUM chr1:226789707 3'AG 226789707 Downstream 53bp 18607 chr1 172437656 172437656 1 + G T UCEC 172437657 + 172437637 172437677 41 TCCACGGATTACTGACAGAGGCCTACAAAACTCTAAAAGAG TCCACGGATTACTGACAGATGCCTACAAAACTCTAAAAGAG < 41bp 0.57703703308844 0.835575637528853 NA NA prediction 0.517077208880826 Functional Gain - C1orf105 ENSG00000180999 CDS Human protein_coding chr1:172437657 chr1:172437656 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_19920 0 0 0 0 1 C1orf105 chr1:172437589 3'AG 172437589 Downstream 68bp 18608 chr7 73483000 73483000 1 + G T SKCM 73483001 + 73482981 73483021 41 GTCCAGGTGGGGCCTGCCTGGGGAAAGCTTGTGGCCGGAAG GTCCAGGTGGGGCCTGCCTTGGGAAAGCTTGTGGCCGGAAG < 41bp 0.57391366987009 0.832443697349569 NA NA prediction 0.51706005495896 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73483001 chr7:73483000 synonymous SNV . 0 20 hm7G_associated_SNPs_19921 0 0 0 0 1 ELN chr7:73482987 3'AG 73482987 Downstream 14bp 18609 chr14 35492129 35492129 1 + G T LIHC 35492130 + 35492110 35492150 41 CTACAGAACTAGACAGTACGGATGGTGCCAAAGTTTTTAGT CTACAGAACTAGACAGTACTGATGGTGCCAAAGTTTTTAGT < 41bp 0.582541870056996 0.841067000579598 NA NA prediction 0.517050261045204 Functional Gain - SRP54 ENSG00000100883 CDS Human protein_coding chr14:35492130 chr14:35492129 synonymous SNV . 0 20 hm7G_associated_SNPs_19922 0 0 1 0 1 SRP54 chr14:35492116 3'AG 35492116 Downstream 14bp 18610 chr2 191795262 191795262 1 + G T LUSC 191795263 + 191795243 191795283 41 TCCTCCTCTGGATAAGATGGGCAACAGTGTTAAGGGAATTC TCCTCCTCTGGATAAGATGTGCAACAGTGTTAAGGGAATTC < 41bp 0.58841987695106 0.84692984185388 NA NA prediction 0.517019929805639 Functional Gain - GLS ENSG00000115419 CDS Human protein_coding chr2:191795263 chr2:191795262 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19924 0 0 1 0 2 GLS chr2:191795163 3'AG 191795163 Downstream 100bp 18611 chr2 191795262 191795262 1 + G T LUSC 191795263 + 191795243 191795283 41 TCCTCCTCTGGATAAGATGGGCAACAGTGTTAAGGGAATTC TCCTCCTCTGGATAAGATGTGCAACAGTGTTAAGGGAATTC < 41bp 0.58841987695106 0.84692984185388 NA NA prediction 0.517019929805639 Functional Gain - GLS ENSG00000115419 CDS Human protein_coding chr2:191795263 chr2:191795262 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19924 0 0 1 0 2 GLS chr2:191795294 5'GT 191795294 Upstream 33bp 18612 chr11 77580816 77580816 1 + G T TGCT 77580817 + 77580797 77580837 41 GAAGGAAGTTGTTGAGAAGGGTGTACAGACTCTTGTGATTG GAAGGAAGTTGTTGAGAAGTGTGTACAGACTCTTGTGATTG < 41bp 0.597787944419478 0.85629737928332 NA NA prediction 0.517018869727683 Functional Gain - AAMDC ENSG00000087884 CDS Human protein_coding chr11:77580817 chr11:77580816 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_19925 0 0 1 0 2 AAMDC chr11:77580768 3'AG 77580768 Downstream 49bp 18613 chr11 77580816 77580816 1 + G T TGCT 77580817 + 77580797 77580837 41 GAAGGAAGTTGTTGAGAAGGGTGTACAGACTCTTGTGATTG GAAGGAAGTTGTTGAGAAGTGTGTACAGACTCTTGTGATTG < 41bp 0.597787944419478 0.85629737928332 NA NA prediction 0.517018869727683 Functional Gain - AAMDC ENSG00000087884 CDS Human protein_coding chr11:77580817 chr11:77580816 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_19925 0 0 1 0 2 AAMDC chr11:77580863 5'GT 77580863 Upstream 48bp 18614 chr7 102112937 102112937 1 + G T KIRC 102112938 + 102112918 102112958 41 CTGGGCACCATCTGCCTGTGGAGCTGGAGGCAGACGTGGGG CTGGGCACCATCTGCCTGTTGAGCTGGAGGCAGACGTGGGG < 41bp 0.611306619164174 0.869807609642352 NA NA prediction 0.517001980956356 Functional Gain - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102112938 chr7:102112937 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19926 0 0 1 0 1 LRWD1 chr7:102112901 3'AG 102112901 Downstream 37bp 18615 chr22 39813797 39813797 1 + G T COAD 39813798 + 39813778 39813818 41 AGAGAGGGAAATTTCGGGAGGGGCCATGGCCGTTGTGGCGG AGAGAGGGAAATTTCGGGATGGGCCATGGCCGTTGTGGCGG < 41bp 0.620194060094003 0.878688385572148 NA NA prediction 0.516988650956291 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39813798 chr22:39813797 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_19927 0 0 1 0 2 TAB1 chr22:39813716 3'AG 39813716 Downstream 82bp 18616 chr22 39813797 39813797 1 + G T COAD 39813798 + 39813778 39813818 41 AGAGAGGGAAATTTCGGGAGGGGCCATGGCCGTTGTGGCGG AGAGAGGGAAATTTCGGGATGGGCCATGGCCGTTGTGGCGG < 41bp 0.620194060094003 0.878688385572148 NA NA prediction 0.516988650956291 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39813798 chr22:39813797 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_19927 0 0 1 0 2 TAB1 chr22:39813854 5'GT 39813854 Upstream 58bp 18617 chr3 23631289 23631289 1 + G T UCEC 23631290 + 23631270 23631310 41 GAGCAGAGCATGACCGGATGGCCAGACAGTGGACCAAGCGG GAGCAGAGCATGACCGGATTGCCAGACAGTGGACCAAGCGG < 41bp 0.457930934498457 0.758486087997364 NA NA prediction 0.516972175994727 Functional Gain - UBE2E2 ENSG00000182247 CDS Human protein_coding chr3:23631290 chr3:23631289 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19929 0 0 1 2 1 UBE2E2 chr3:23631225 3'AG 23631225 Downstream 65bp 18618 chr20 57899415 57899415 1 + G T UCEC 57899416 + 57899396 57899436 41 AGGACCAACAAAGCAAGCAGGCTTTAGACCTCCACCATCCA AGGACCAACAAAGCAAGCATGCTTTAGACCTCCACCATCCA < 41bp 0.451508790993843 0.758482276335059 NA NA prediction 0.516964552670119 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899416 chr20:57899415 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_19930 0 0 0 0 2 EDN3 chr20:57899382 3'AG 57899382 Downstream 34bp 18619 chr20 57899415 57899415 1 + G T UCEC 57899416 + 57899396 57899436 41 AGGACCAACAAAGCAAGCAGGCTTTAGACCTCCACCATCCA AGGACCAACAAAGCAAGCATGCTTTAGACCTCCACCATCCA < 41bp 0.451508790993843 0.758482276335059 NA NA prediction 0.516964552670119 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57899416 chr20:57899415 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_19930 0 0 0 0 2 EDN3 chr20:57899386 3'AG 57899386 Downstream 30bp 18620 chr2 133175439 133175439 1 + G T LUSC 133175440 + 133175420 133175460 41 TCCGAGAGCGAAGAGAGCAGGACCGCCAGGAGGCAGACCAT TCCGAGAGCGAAGAGAGCATGACCGCCAGGAGGCAGACCAT < 41bp 0.598392169065289 0.856873605588199 NA NA prediction 0.51696287304582 Functional Gain - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175440 chr2:133175439 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_19931 0 0 0 0 1 GPR39 chr2:133175471 5'GT 133175471 Upstream 33bp 18621 chr2 48848311 48848311 1 + G T UCEC 48848312 + 48848292 48848332 41 TTTCCCCTCTGCAGCTCTGGGAAACCAAGGTTTTGCAGTCT TTTCCCCTCTGCAGCTCTGTGAAACCAAGGTTTTGCAGTCT < 41bp 0.584593503558111 0.843074099426731 NA NA prediction 0.51696119173724 Functional Gain - GTF2A1L;STON1-GTF2A1L ENSG00000068781;ENSG00000242441 CDS Human other chr2:48848312 chr2:48848311 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19932 0 0 0 0 1 GTF2A1L;STON1-GTF2A1L chr2:48848306 3'AG 48848306 Downstream 6bp 18622 chr11 66325386 66325386 1 + G T OV 66325387 + 66325367 66325407 41 TGCCTTCATGCCCTCCGAGGGCAAGCTGGTCTCGGTGAGCT TGCCTTCATGCCCTCCGAGTGCAAGCTGGTCTCGGTGAGCT < 41bp 0.60660803019643 0.865070748982501 NA NA prediction 0.516925437572141 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325387 chr11:66325386 unknown 1.000 2 20 hm7G_associated_SNPs_19934 0 0 0 0 1 ACTN3 chr11:66325400 5'GT 66325400 Upstream 15bp 18623 chr16 21261066 21261066 1 + G T UCEC 21261067 + 21261047 21261087 41 TCTAGAGGGGACCCTGATAGGTGTGACATCTGGGGAAACAC TCTAGAGGGGACCCTGATATGTGTGACATCTGGGGAAACAC < 41bp 0.586755543096279 0.845213709109239 NA NA prediction 0.516916332025922 Functional Gain - ANKS4B ENSG00000175311 CDS Human protein_coding chr16:21261067 chr16:21261066 nonsynonymous SNV 0.939 3 20 hm7G_associated_SNPs_19935 0 0 0 0 1 ANKS4B chr16:21261052 3'AG 21261052 Downstream 15bp 18624 chr20 31805399 31805399 1 + G T BLCA 31805400 + 31805380 31805420 41 GGTTGCTGGCCTTGCCCTTGGCACCACACAAGCAGCCTTGG GGTTGCTGGCCTTGCCCTTTGCACCACACAAGCAGCCTTGG < 41bp 0.608871021396298 0.867303019081195 NA NA prediction 0.516863995369793 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31805400 chr20:31805399 nonsynonymous SNV 0.030 1 20 hm7G_associated_SNPs_19938 0 0 0 0 1 BPIFA3 chr20:31805469 5'GT 31805469 Upstream 71bp 18625 chr4 187118697 187118697 1 + G T LUSC 187118698 + 187118678 187118718 41 ATTTTATAGAAACAGCTATGGGGAAGAATATTGGTGCTCAA ATTTTATAGAAACAGCTATTGGGAAGAATATTGGTGCTCAA < 41bp 0.601129206217999 0.859548013769504 NA NA prediction 0.516837615103011 Functional Gain - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187118698 chr4:187118697 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19941 0 0 0 0 2 CYP4V2 chr4:187118687 3'AG 187118687 Downstream 11bp 18626 chr4 187118697 187118697 1 + G T LUSC 187118698 + 187118678 187118718 41 ATTTTATAGAAACAGCTATGGGGAAGAATATTGGTGCTCAA ATTTTATAGAAACAGCTATTGGGAAGAATATTGGTGCTCAA < 41bp 0.601129206217999 0.859548013769504 NA NA prediction 0.516837615103011 Functional Gain - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187118698 chr4:187118697 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_19941 0 0 0 0 2 CYP4V2 chr4:187118756 5'GT 187118756 Upstream 60bp 18627 chr10 71211406 71211406 1 + G T SARC 71211407 + 71211387 71211427 41 GCGCGCTTCTCCTACCTCTGGCTCAAGTTTTCACTTATCAT GCGCGCTTCTCCTACCTCTTGCTCAAGTTTTCACTTATCAT < 41bp 0.608311828953582 0.866720370883172 NA NA prediction 0.516817083859181 Functional Gain - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71211407 chr10:71211406 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_19943 0 0 1 0 1 TSPAN15 chr10:71211446 5'GT 71211446 Upstream 41bp 18628 chr2 69002442 69002442 1 + G T LUAD 69002443 + 69002423 69002463 41 GGAGAGGCCCATCAAGATGGGCTGGCTGAAGAAGCAGAGGT GGAGAGGCCCATCAAGATGTGCTGGCTGAAGAAGCAGAGGT < 41bp 0.618958153552574 0.877342900966801 NA NA prediction 0.516769494828454 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002443 chr2:69002442 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19946 0 0 0 0 2 ARHGAP25 chr2:69002353 3'AG 69002353 Downstream 90bp 18629 chr2 69002442 69002442 1 + G T LUAD 69002443 + 69002423 69002463 41 GGAGAGGCCCATCAAGATGGGCTGGCTGAAGAAGCAGAGGT GGAGAGGCCCATCAAGATGTGCTGGCTGAAGAAGCAGAGGT < 41bp 0.618958153552574 0.877342900966801 NA NA prediction 0.516769494828454 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002443 chr2:69002442 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19946 0 0 0 0 2 ARHGAP25 chr2:69002488 5'GT 69002488 Upstream 47bp 18630 chr17 33513346 33513346 1 + G T UCEC 33513347 + 33513327 33513367 41 TGGTTGGAGATCCTCCAGCGGCTTTGCCTGCACGACCAGCT TGGTTGGAGATCCTCCAGCTGCTTTGCCTGCACGACCAGCT < 41bp 0.604270329567215 0.86264996560879 NA NA prediction 0.51675927208315 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33513347 chr17:33513346 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_19948 0 0 0 0 1 UNC45B chr17:33513318 3'AG 33513318 Downstream 29bp 18631 chr11 130069888 130069888 1 + G T LUAD 130069889 + 130069869 130069909 41 AGACAGGCTCGTGTTGTTGGGGGCACGGATGCGGATGAGGG AGACAGGCTCGTGTTGTTGTGGGCACGGATGCGGATGAGGG < 41bp 0.617532572357082 0.875905929956659 NA NA prediction 0.516746715199154 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130069889 chr11:130069888 nonsynonymous SNV 0.079 4 20 hm7G_associated_SNPs_19950 0 0 0 0 1 ST14 chr11:130069846 3'AG 130069846 Downstream 43bp 18632 chr22 31484511 31484511 1 + G T LUSC 31484512 + 31484492 31484532 41 TCTGCAGCTCTCAGCAGCGGGAAGCTGAGCAGCGGGCTGCC TCTGCAGCTCTCAGCAGCGTGAAGCTGAGCAGCGGGCTGCC < 41bp 0.613997903574021 0.87236839106642 NA NA prediction 0.516740974984798 Functional Gain - SMTN ENSG00000183963 CDS Human protein_coding chr22:31484512 chr22:31484511 synonymous SNV . 0 20 hm7G_associated_SNPs_19951 0 0 1 0 2 SMTN chr22:31484499 3'AG 31484499 Downstream 13bp 18633 chr22 31484511 31484511 1 + G T LUSC 31484512 + 31484492 31484532 41 TCTGCAGCTCTCAGCAGCGGGAAGCTGAGCAGCGGGCTGCC TCTGCAGCTCTCAGCAGCGTGAAGCTGAGCAGCGGGCTGCC < 41bp 0.613997903574021 0.87236839106642 NA NA prediction 0.516740974984798 Functional Gain - SMTN ENSG00000183963 CDS Human protein_coding chr22:31484512 chr22:31484511 synonymous SNV . 0 20 hm7G_associated_SNPs_19951 0 0 1 0 2 SMTN chr22:31484592 5'GT 31484592 Upstream 82bp 18634 chr21 27066110 27066110 1 + G T PAAD 27066111 + 27066091 27066131 41 ATGATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAG ATGATAGATTTCAATATCCTGATCAAAAATGTGACAAGAAG < 41bp 0.599531952573505 0.857882742695159 NA NA prediction 0.516701580243307 Functional Gain - JAM2 ENSG00000154721 CDS Human protein_coding chr21:27066111 chr21:27066110 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_19953 0 0 1 2 1 JAM2 chr21:27066068 3'AG 27066068 Downstream 43bp 18635 chr15 59799463 59799463 1 + G T UCEC 59799464 + 59799444 59799484 41 AGCACAAAACGACCTATGAGGGGCTCCAGCACTTGAACAAA AGCACAAAACGACCTATGATGGGCTCCAGCACTTGAACAAA < 41bp 0.424308157235952 0.758325408236081 NA NA prediction 0.516650816472161 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59799464 chr15:59799463 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_19957 0 0 0 0 2 FAM81A chr15:59799412 3'AG 59799412 Downstream 52bp 18636 chr15 59799463 59799463 1 + G T UCEC 59799464 + 59799444 59799484 41 AGCACAAAACGACCTATGAGGGGCTCCAGCACTTGAACAAA AGCACAAAACGACCTATGATGGGCTCCAGCACTTGAACAAA < 41bp 0.424308157235952 0.758325408236081 NA NA prediction 0.516650816472161 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59799464 chr15:59799463 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_19957 0 0 0 0 2 FAM81A chr15:59799541 5'GT 59799541 Upstream 79bp 18637 chr9 37737160 37737160 1 + G T UCEC 37737161 + 37737141 37737181 41 CTGATTGCTGGGTACTACAGGCTGTTGGTTGACCCAGTTAC CTGATTGCTGGGTACTACATGCTGTTGGTTGACCCAGTTAC < 41bp 0.420018429129364 0.758322862849055 NA NA prediction 0.51664572569811 Functional Gain - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37737161 chr9:37737160 nonsynonymous SNV 0.953 4 20 hm7G_associated_SNPs_19958 0 0 0 0 2 FRMPD1 chr9:37737093 3'AG 37737093 Downstream 68bp 18638 chr9 37737160 37737160 1 + G T UCEC 37737161 + 37737141 37737181 41 CTGATTGCTGGGTACTACAGGCTGTTGGTTGACCCAGTTAC CTGATTGCTGGGTACTACATGCTGTTGGTTGACCCAGTTAC < 41bp 0.420018429129364 0.758322862849055 NA NA prediction 0.51664572569811 Functional Gain - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37737161 chr9:37737160 nonsynonymous SNV 0.953 4 20 hm7G_associated_SNPs_19958 0 0 0 0 2 FRMPD1 chr9:37737240 5'GT 37737240 Upstream 81bp 18639 chr7 33014262 33014262 1 + G T SARC 33014263 + 33014243 33014283 41 CCACTTTCAATGTGTTTGTGGGAAAAGGACAGCTGATCACA CCACTTTCAATGTGTTTGTTGGAAAAGGACAGCTGATCACA < 41bp 0.618767527307543 0.877086182098967 NA NA prediction 0.516637309582848 Functional Gain - FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014263 chr7:33014262 synonymous SNV . 0 20 hm7G_associated_SNPs_19959 0 0 1 0 1 FKBP9 chr7:33014229 3'AG 33014229 Downstream 34bp 18640 chr2 228758594 228758594 1 + G T UCEC 228758595 + 228758575 228758615 41 AACACGCTGGAGGGCCACAGGAATGTGGTTTATGCCATAGC AACACGCTGGAGGGCCACATGAATGTGGTTTATGCCATAGC < 41bp 0.602660999441719 0.860960335538235 NA NA prediction 0.516598672193032 Functional Gain - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228758595 chr2:228758594 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_19961 0 0 0 0 2 DAW1 chr2:228758511 3'AG 228758511 Downstream 84bp 18641 chr2 228758594 228758594 1 + G T UCEC 228758595 + 228758575 228758615 41 AACACGCTGGAGGGCCACAGGAATGTGGTTTATGCCATAGC AACACGCTGGAGGGCCACATGAATGTGGTTTATGCCATAGC < 41bp 0.602660999441719 0.860960335538235 NA NA prediction 0.516598672193032 Functional Gain - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228758595 chr2:228758594 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_19961 0 0 0 0 2 DAW1 chr2:228758633 5'GT 228758633 Upstream 40bp 18642 chr4 89574193 89574193 1 + G T UCEC 89574194 + 89574174 89574214 41 TCTCTCAGGAGCTGTTTTTGGCTGGGGGATGAATAATGCCG TCTCTCAGGAGCTGTTTTTTGCTGGGGGATGAATAATGCCG < 41bp 0.613479310384877 0.871773817243053 NA NA prediction 0.516589013716352 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89574194 chr4:89574193 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_19962 0 0 1 0 1 HERC3 chr4:89574241 5'GT 89574241 Upstream 49bp 18643 chr4 158257004 158257004 1 + G T LUAD 158257005 + 158256985 158257025 41 GACACGAAAATTTGGAATGGGATGGTTGGAGAACTTGTATA GACACGAAAATTTGGAATGTGATGGTTGGAGAACTTGTATA < 41bp 0.457676490907376 0.758293506105866 NA NA prediction 0.516587012211733 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158257005 chr4:158257004 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_19963 0 0 1 2 1 GRIA2 chr4:158257029 5'GT 158257029 Upstream 26bp 18644 chr16 69333668 69333668 1 + G T UCEC 69333669 + 69333649 69333689 41 TGGATTTTGGTGGTCCCGAGGGAGAACTGGTAAGAGTGTTT TGGATTTTGGTGGTCCCGATGGAGAACTGGTAAGAGTGTTT < 41bp 0.440933481056602 0.758282847103612 NA NA prediction 0.516565694207225 Functional Gain - SNTB2 ENSG00000168807;ENSG00000260914 CDS Human other chr16:69333669 chr16:69333668 nonsynonymous SNV 0.945 4 20 hm7G_associated_SNPs_19964 0 0 1 0 1 SNTB2 chr16:69333677 5'GT 69333677 Upstream 10bp 18645 chr17 46628485 46628485 1 - C A rs544041703 46628484 - 46628464 46628504 41 GAGGCAGTGGTGGCAGCGGGGGCGGTGGCGGCGGCGGCGGG GAGGCAGTGGTGGCAGCGGTGGCGGTGGCGGCGGCGGCGGG < 41bp 0.443933134925177 0.758276065783271 NA NA prediction 0.516552131566543 Functional Gain - HOXB3 ENSG00000120093 CDS Human protein_coding chr17:46628484 chr17:46628485 synonymous SNV . 0 20 hm7G_associated_SNPs_19965 0 0 1 0 1 HOXB3 chr17:46628543 3'AG 46628543 Downstream 59bp 18646 chr5 134305649 134305649 1 + G T THCA 134305650 + 134305630 134305670 41 AGGAACGATGATGAATGTCGGGCATTTGTGAAGAGAGTCAT AGGAACGATGATGAATGTCTGGCATTTGTGAAGAGAGTCAT < 41bp 0.594471605563993 0.852747640240641 NA NA prediction 0.516552069353296 Functional Gain - CATSPER3 ENSG00000152705 CDS Human protein_coding chr5:134305650 chr5:134305649 nonsynonymous SNV 0.025 1 20 hm7G_associated_SNPs_19966 0 0 0 0 1 CATSPER3 chr5:134305629 3'AG 134305629 Downstream 21bp 18647 chr11 43351532 43351532 1 + G T LUSC 43351533 + 43351513 43351553 41 AGGCTGCAGTACTTTGCACGGGGCCTGCAAGTTTATATCAG AGGCTGCAGTACTTTGCACTGGGCCTGCAAGTTTATATCAG < 41bp 0.43962628590741 0.758227013483223 NA NA prediction 0.516454026966447 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43351533 chr11:43351532 nonsynonymous SNV 0.889 4 20 hm7G_associated_SNPs_19971 0 0 1 0 2 API5 chr11:43351515 3'AG 43351515 Downstream 18bp 18648 chr11 43351532 43351532 1 + G T LUSC 43351533 + 43351513 43351553 41 AGGCTGCAGTACTTTGCACGGGGCCTGCAAGTTTATATCAG AGGCTGCAGTACTTTGCACTGGGCCTGCAAGTTTATATCAG < 41bp 0.43962628590741 0.758227013483223 NA NA prediction 0.516454026966447 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43351533 chr11:43351532 nonsynonymous SNV 0.889 4 20 hm7G_associated_SNPs_19971 0 0 1 0 2 API5 chr11:43351608 5'GT 43351608 Upstream 77bp 18649 chr15 66727398 66727398 1 + G T UCEC 66727399 + 66727379 66727419 41 CCTTGCAGAAGAAGCTGGAGGAGCTAGAGCTTGATGAGCAG CCTTGCAGAAGAAGCTGGATGAGCTAGAGCTTGATGAGCAG < 41bp 0.617133472839333 0.875339038108282 NA NA prediction 0.516411130537898 Functional Gain - MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66727399 chr15:66727398 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_19972 0 0 1 0 1 MAP2K1 chr15:66727365 3'AG 66727365 Downstream 34bp 18650 chr12 32861095 32861095 1 + G T TGCT 32861096 + 32861076 32861116 41 AAAATTTTTAGCTTTACACGGATTTTGATGAAATTCGACAA AAAATTTTTAGCTTTACACTGATTTTGATGAAATTCGACAA < 41bp 0.462205070304273 0.758194906393591 NA NA prediction 0.516389812787181 Functional Gain - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32861096 chr12:32861095 stopgain . 0 20 hm7G_associated_SNPs_19973 0 0 1 0 2 DNM1L chr12:32861087 3'AG 32861087 Downstream 9bp 18651 chr12 32861095 32861095 1 + G T TGCT 32861096 + 32861076 32861116 41 AAAATTTTTAGCTTTACACGGATTTTGATGAAATTCGACAA AAAATTTTTAGCTTTACACTGATTTTGATGAAATTCGACAA < 41bp 0.462205070304273 0.758194906393591 NA NA prediction 0.516389812787181 Functional Gain - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32861096 chr12:32861095 stopgain . 0 20 hm7G_associated_SNPs_19973 0 0 1 0 2 DNM1L chr12:32861158 5'GT 32861158 Upstream 64bp 18652 chr10 94392419 94392419 1 + G T UCEC 94392420 + 94392400 94392440 41 ATGGCAGCTCAAAGCAAAAGGCCATGCTAGAAGTACATAAG ATGGCAGCTCAAAGCAAAATGCCATGCTAGAAGTACATAAG < 41bp 0.430784545240463 0.758184180348176 NA NA prediction 0.516368360696351 Functional Gain - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94392420 chr10:94392419 nonsynonymous SNV 0.818 0 20 hm7G_associated_SNPs_19975 0 0 1 0 1 KIF11 chr10:94392450 5'GT 94392450 Upstream 32bp 18653 chr16 312122 312122 1 + G T THCA 312123 + 312103 312143 41 CCTCTACTCCGGCAGCACCGGGCACCAGATTGGCCTCAGAG CCTCTACTCCGGCAGCACCTGGCACCAGATTGGCCTCAGAG < 41bp 0.622242330772193 0.88040476240616 NA NA prediction 0.516324863267935 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:312123 chr16:312122 nonsynonymous SNV 0.122 4 20 hm7G_associated_SNPs_19976 0 0 1 0 1 FAM234A chr16:312092 3'AG 312092 Downstream 31bp 18654 chr13 31797114 31797114 1 + G T SARC 31797115 + 31797095 31797135 41 GAGAAAAGTGGTATATCAAGGAAAAATGACATAGGTAAGTA GAGAAAAGTGGTATATCAATGAAAAATGACATAGGTAAGTA < 41bp 0.457796930475497 0.758158674139653 NA NA prediction 0.516317348279306 Functional Gain - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31797115 chr13:31797114 nonsynonymous SNV 0.024 0 20 hm7G_associated_SNPs_19977 0 0 0 0 2 B3GLCT chr13:31797089 3'AG 31797089 Downstream 26bp 18655 chr13 31797114 31797114 1 + G T SARC 31797115 + 31797095 31797135 41 GAGAAAAGTGGTATATCAAGGAAAAATGACATAGGTAAGTA GAGAAAAGTGGTATATCAATGAAAAATGACATAGGTAAGTA < 41bp 0.457796930475497 0.758158674139653 NA NA prediction 0.516317348279306 Functional Gain - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31797115 chr13:31797114 nonsynonymous SNV 0.024 0 20 hm7G_associated_SNPs_19977 0 0 0 0 2 B3GLCT chr13:31797128 5'GT 31797128 Upstream 15bp 18656 chrX 153780352 153780352 1 + G T THYM 153780353 + 153780333 153780373 41 TGCACCTGCCTTCAGAACAGGGCGCTCCTGAGACCCTCCAG TGCACCTGCCTTCAGAACATGGCGCTCCTGAGACCCTCCAG < 41bp 0.416851371149561 0.758153529157044 NA NA prediction 0.516307058314087 Functional Gain - IKBKG ENSG00000073009 CDS Human other chrX:153780353 chrX:153780352 nonsynonymous SNV 0.095 1 20 hm7G_associated_SNPs_19978 0 0 1 0 1 IKBKG chrX:153780404 5'GT 153780404 Upstream 53bp 18657 chr6 167585672 167585672 1 + G T HNSC 167585673 + 167585653 167585693 41 GGCCAGGGAGCCCAAGGAGGGCACCCACCCAGAGGACCCGT GGCCAGGGAGCCCAAGGAGTGCACCCACCCAGAGGACCCGT < 41bp 0.608815007323505 0.866965515525295 NA NA prediction 0.51630101640358 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167585673 chr6:167585672 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_19979 0 0 0 0 1 TCP10L2 chr6:167585632 3'AG 167585632 Downstream 41bp 18658 chr2 88367458 88367458 1 + G T UCEC 88367459 + 88367439 88367479 41 GGGGTCTGAAGGCCACCAAGGAGTTCTGGGCTGCAGATATC GGGGTCTGAAGGCCACCAATGAGTTCTGGGCTGCAGATATC < 41bp 0.60519441848629 0.863344427043994 NA NA prediction 0.516300017115408 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88367459 chr2:88367458 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_19980 0 0 0 0 1 SMYD1 chr2:88367520 5'GT 88367520 Upstream 63bp 18659 chr17 60483901 60483901 1 + G T SARC 60483902 + 60483882 60483922 41 TGTGGAGTCCCTACACTATGGGCTATGGAAAAAGGACACTT TGTGGAGTCCCTACACTATTGGCTATGGAAAAAGGACACTT < 41bp 0.607891417661159 0.866022476847031 NA NA prediction 0.516262118371743 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60483902 chr17:60483901 nonsynonymous SNV 0.469 0 20 hm7G_associated_SNPs_19982 0 0 0 0 1 EFCAB3 chr17:60483841 3'AG 60483841 Downstream 61bp 18660 chr15 101440918 101440918 1 + G T UCEC 101440919 + 101440899 101440939 41 GTGGAGTATGCCAAGAAACGGCCCGTGGGAGACCCCTTCGA GTGGAGTATGCCAAGAAACTGCCCGTGGGAGACCCCTTCGA < 41bp 0.615718524239275 0.873849495563131 NA NA prediction 0.516261942647713 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101440919 chr15:101440918 nonsynonymous SNV 0.543 2 20 hm7G_associated_SNPs_19983 0 0 0 0 1 ALDH1A3 chr15:101440964 5'GT 101440964 Upstream 47bp 18661 chr10 18280116 18280116 1 + G T LUAD 18280117 + 18280097 18280137 41 GCAGGAAGCCCCAGAATTTGGGCATTTCCATGAAAGCAAAG GCAGGAAGCCCCAGAATTTTGGCATTTCCATGAAAGCAAAG < 41bp 0.419726152354089 0.758130070362489 NA NA prediction 0.516260140724977 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18280117 chr10:18280116 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_19985 0 0 0 0 1 SLC39A12 chr10:18280080 3'AG 18280080 Downstream 37bp 18662 chr9 140100321 140100321 1 + G T BLCA 140100322 + 140100302 140100342 41 GGTCGCGAGGCCCGGCGCCGGCGGCTTGGCTGCCGGGTGCA GGTCGCGAGGCCCGGCGCCTGCGGCTTGGCTGCCGGGTGCA < 41bp 0.610169044171295 0.868268374024387 NA NA prediction 0.516198659706183 Functional Gain - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140100322 chr9:140100321 nonsynonymous SNV 0.947 1 20 hm7G_associated_SNPs_19990 0 0 0 0 1 NDOR1 chr9:140100364 5'GT 140100364 Upstream 44bp 18663 chr2 108868873 108868873 1 + G T LUSC 108868874 + 108868854 108868894 41 TTCTAAATGATGGTGATGTGGAGAAATGCAAAAGAGCCCAG TTCTAAATGATGGTGATGTTGAGAAATGCAAAAGAGCCCAG < 41bp 0.586577461100284 0.844644182084374 NA NA prediction 0.516133441968179 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108868874 chr2:108868873 synonymous SNV . 0 20 hm7G_associated_SNPs_19993 0 0 0 0 2 SULT1C3 chr2:108868821 3'AG 108868821 Downstream 53bp 18664 chr2 108868873 108868873 1 + G T LUSC 108868874 + 108868854 108868894 41 TTCTAAATGATGGTGATGTGGAGAAATGCAAAAGAGCCCAG TTCTAAATGATGGTGATGTTGAGAAATGCAAAAGAGCCCAG < 41bp 0.586577461100284 0.844644182084374 NA NA prediction 0.516133441968179 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108868874 chr2:108868873 synonymous SNV . 0 20 hm7G_associated_SNPs_19993 0 0 0 0 2 SULT1C3 chr2:108868949 5'GT 108868949 Upstream 77bp 18665 chrX 152827615 152827615 1 + G T LUAD 152827616 + 152827596 152827636 41 GTCATCGTCCAGTTTGGCGGGAAGCCCTTCAGCTGCTCCCC GTCATCGTCCAGTTTGGCGTGAAGCCCTTCAGCTGCTCCCC < 41bp 0.414135166395404 0.758062988555763 NA NA prediction 0.516125977111525 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152827616 chrX:152827615 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_19994 0 0 0 0 1 ATP2B3 chrX:152827700 5'GT 152827700 Upstream 86bp 18666 chr2 158971687 158971687 1 + G T UCEC 158971688 + 158971668 158971708 41 ACAAGGAGCTCGGGTTTGAGGAAGCTGAAGAAGACATAAAA ACAAGGAGCTCGGGTTTGATGAAGCTGAAGAAGACATAAAA < 41bp 0.599052077480621 0.857100269081409 NA NA prediction 0.516096383201577 Functional Gain - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158971688 chr2:158971687 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_19996 0 0 0 0 1 UPP2 chr2:158971613 3'AG 158971613 Downstream 75bp 18667 chr1 59978035 59978035 1 + G T UCEC 59978036 + 59978016 59978056 41 GAAATGGGCTCACACCAGAGGCAGCAAGAGACCTTGGCCTT GAAATGGGCTCACACCAGATGCAGCAAGAGACCTTGGCCTT < 41bp 0.443057898339726 0.758015043271061 NA NA prediction 0.516030086542121 Functional Gain - FGGY ENSG00000172456 CDS Human protein_coding chr1:59978036 chr1:59978035 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_19999 0 0 1 0 2 FGGY chr1:59977983 3'AG 59977983 Downstream 53bp 18668 chr1 59978035 59978035 1 + G T UCEC 59978036 + 59978016 59978056 41 GAAATGGGCTCACACCAGAGGCAGCAAGAGACCTTGGCCTT GAAATGGGCTCACACCAGATGCAGCAAGAGACCTTGGCCTT < 41bp 0.443057898339726 0.758015043271061 NA NA prediction 0.516030086542121 Functional Gain - FGGY ENSG00000172456 CDS Human protein_coding chr1:59978036 chr1:59978035 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_19999 0 0 1 0 2 FGGY chr1:59978111 5'GT 59978111 Upstream 77bp 18669 chr1 178423638 178423638 1 + G T LUSC 178423639 + 178423619 178423659 41 GATTTTTTAGAACATGAATGGGGTGGAATGAAGCGCTTTCT GATTTTTTAGAACATGAATTGGGTGGAATGAAGCGCTTTCT < 41bp 0.440440142444263 0.758014774031197 NA NA prediction 0.516029548062394 Functional Gain - RASAL2 ENSG00000075391 CDS Human protein_coding chr1:178423639 chr1:178423638 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20000 0 0 1 0 1 RASAL2 chr1:178423582 3'AG 178423582 Downstream 57bp 18670 chr13 32367192 32367192 1 + G T UCEC 32367193 + 32367173 32367213 41 TGACCAAACAGAAGATATTGGAAGCAAAGGGTATTCTCTTG TGACCAAACAGAAGATATTTGAAGCAAAGGGTATTCTCTTG < 41bp 0.57282383868062 0.830829982258268 NA NA prediction 0.516012287155295 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32367193 chr13:32367192 stopgain 0.928 1 20 hm7G_associated_SNPs_20002 0 0 0 0 1 RXFP2 chr13:32367225 5'GT 32367225 Upstream 34bp 18671 chr4 57349352 57349352 1 + G T LUAD 57349353 + 57349333 57349373 41 AAGTGAAATTAACCAATGCGGAAGGAGTAGAGTTTAAGCTT AAGTGAAATTAACCAATGCTGAAGGAGTAGAGTTTAAGCTT < 41bp 0.58661069434708 0.844611817044915 NA NA prediction 0.516002245395669 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57349353 chr4:57349352 synonymous SNV . 0 20 hm7G_associated_SNPs_20003 0 0 1 0 2 SRP72 chr4:57349305 3'AG 57349305 Downstream 48bp 18672 chr4 57349352 57349352 1 + G T LUAD 57349353 + 57349333 57349373 41 AAGTGAAATTAACCAATGCGGAAGGAGTAGAGTTTAAGCTT AAGTGAAATTAACCAATGCTGAAGGAGTAGAGTTTAAGCTT < 41bp 0.58661069434708 0.844611817044915 NA NA prediction 0.516002245395669 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57349353 chr4:57349352 synonymous SNV . 0 20 hm7G_associated_SNPs_20003 0 0 1 0 2 SRP72 chr4:57349436 5'GT 57349436 Upstream 85bp 18673 chr10 94454394 94454394 1 + G T STAD 94454395 + 94454375 94454415 41 GCCCAGTGAACAGAATAAAGGTGCTTCTTTGGATAGCTCTC GCCCAGTGAACAGAATAAATGTGCTTCTTTGGATAGCTCTC < 41bp 0.576710740905563 0.8347083068432 NA NA prediction 0.515995131875273 Functional Gain - HHEX ENSG00000152804 CDS Human protein_coding chr10:94454395 chr10:94454394 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20004 0 0 1 0 1 HHEX chr10:94454304 3'AG 94454304 Downstream 91bp 18674 chr16 70172816 70172816 1 + G T READ 70172817 + 70172797 70172837 41 TATAGGTACCTTGCCGAATGGATGGTACATGGTTATCCCTC TATAGGTACCTTGCCGAATTGATGGTACATGGTTATCCCTC < 41bp 0.42635022621177 0.757996723817502 NA NA prediction 0.515993447635003 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70172817 chr16:70172816 nonsynonymous SNV 0.947 2 20 hm7G_associated_SNPs_20005 0 0 0 0 1 PDPR chr16:70172802 3'AG 70172802 Downstream 15bp 18675 chr19 36352122 36352122 1 + G T LUAD 36352123 + 36352103 36352143 41 CTGGGCTATCGGGCCTGCGGGGCGGCGCCGCGGAGGCTCGG CTGGGCTATCGGGCCTGCGTGGCGGCGCCGCGGAGGCTCGG < 41bp 0.622840517845627 0.880826333580601 NA NA prediction 0.515971631469948 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352123 chr19:36352122 synonymous SNV . 0 20 hm7G_associated_SNPs_20006 0 0 0 0 2 KIRREL2 chr19:36352024 3'AG 36352024 Downstream 99bp 18676 chr19 36352122 36352122 1 + G T LUAD 36352123 + 36352103 36352143 41 CTGGGCTATCGGGCCTGCGGGGCGGCGCCGCGGAGGCTCGG CTGGGCTATCGGGCCTGCGTGGCGGCGCCGCGGAGGCTCGG < 41bp 0.622840517845627 0.880826333580601 NA NA prediction 0.515971631469948 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352123 chr19:36352122 synonymous SNV . 0 20 hm7G_associated_SNPs_20006 0 0 0 0 2 KIRREL2 chr19:36352156 5'GT 36352156 Upstream 35bp 18677 chr17 21207773 21207773 1 + G T LUAD 21207774 + 21207754 21207794 41 TGTCCTTATCAACAAGGAGGGCCATGTGAAGATGTGTGACT TGTCCTTATCAACAAGGAGTGCCATGTGAAGATGTGTGACT < 41bp 0.617796532227081 0.875776158382657 NA NA prediction 0.51595925231115 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21207774 chr17:21207773 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_20008 0 0 1 0 2 MAP2K3 chr17:21207738 3'AG 21207738 Downstream 36bp 18678 chr17 21207773 21207773 1 + G T LUAD 21207774 + 21207754 21207794 41 TGTCCTTATCAACAAGGAGGGCCATGTGAAGATGTGTGACT TGTCCTTATCAACAAGGAGTGCCATGTGAAGATGTGTGACT < 41bp 0.617796532227081 0.875776158382657 NA NA prediction 0.51595925231115 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21207774 chr17:21207773 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_20008 0 0 1 0 2 MAP2K3 chr17:21207865 5'GT 21207865 Upstream 93bp 18679 chr13 103513890 103513890 1 + G T UCEC 103513891 + 103513871 103513911 41 TTCACAGTACCAACTCAAAGGCTTGCTTAAAAAGAACTATC TTCACAGTACCAACTCAAATGCTTGCTTAAAAAGAACTATC < 41bp 0.428134111706018 0.75794794478706 NA NA prediction 0.515895889574121 Functional Gain - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103513891 chr13:103513890 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20011 0 0 1 0 1 BIVM-ERCC5;ERCC5 chr13:103513857 3'AG 103513857 Downstream 34bp 18680 chr10 71244942 71244942 1 + G T LUSC 71244943 + 71244923 71244963 41 CATCATGGAGCTCATTGGTGGCGTGGTGGCCTTGACCTTCC CATCATGGAGCTCATTGGTTGCGTGGTGGCCTTGACCTTCC < 41bp 0.617460602159877 0.875396319251922 NA NA prediction 0.515871434184089 Functional Gain - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71244943 chr10:71244942 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_20012 0 0 1 0 2 TSPAN15 chr10:71244897 3'AG 71244897 Downstream 46bp 18681 chr10 71244942 71244942 1 + G T LUSC 71244943 + 71244923 71244963 41 CATCATGGAGCTCATTGGTGGCGTGGTGGCCTTGACCTTCC CATCATGGAGCTCATTGGTTGCGTGGTGGCCTTGACCTTCC < 41bp 0.617460602159877 0.875396319251922 NA NA prediction 0.515871434184089 Functional Gain - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71244943 chr10:71244942 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_20012 0 0 1 0 2 TSPAN15 chr10:71244971 5'GT 71244971 Upstream 30bp 18682 chr5 109103408 109103408 1 + G T LUSC 109103409 + 109103389 109103429 41 TTTTTTGGAGACAGAATTGGGGTATGTAGGGTTTGATGAAA TTTTTTGGAGACAGAATTGTGGTATGTAGGGTTTGATGAAA < 41bp 0.438891439591386 0.75793169293818 NA NA prediction 0.51586338587636 Functional Gain - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109103409 chr5:109103408 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20013 0 0 1 0 1 MAN2A1 chr5:109103409 5'GT 109103409 Upstream 2bp 18683 chr16 31391090 31391090 1 + G T LUSC 31391091 + 31391071 31391111 41 TGTGCAGGTCAATAACCTGGGACAGAGGGACCTGCCTGTCA TGTGCAGGTCAATAACCTGTGACAGAGGGACCTGCCTGTCA < 41bp 0.422050563491826 0.757921388380661 NA NA prediction 0.515842776761322 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391091 chr16:31391090 stopgain 0.976 0 20 hm7G_associated_SNPs_20014 0 0 0 0 2 ITGAX chr16:31391078 3'AG 31391078 Downstream 13bp 18684 chr16 31391090 31391090 1 + G T LUSC 31391091 + 31391071 31391111 41 TGTGCAGGTCAATAACCTGGGACAGAGGGACCTGCCTGTCA TGTGCAGGTCAATAACCTGTGACAGAGGGACCTGCCTGTCA < 41bp 0.422050563491826 0.757921388380661 NA NA prediction 0.515842776761322 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391091 chr16:31391090 stopgain 0.976 0 20 hm7G_associated_SNPs_20014 0 0 0 0 2 ITGAX chr16:31391185 5'GT 31391185 Upstream 96bp 18685 chr7 66773997 66773997 1 + G T LUSC 66773998 + 66773978 66774018 41 CAGCTTCTGTGAGTTTGTGGGGACATTGGTCTGTCGGTGCC CAGCTTCTGTGAGTTTGTGTGGACATTGGTCTGTCGGTGCC < 41bp 0.582879706964239 0.840790255552876 NA NA prediction 0.515821097177274 Functional Gain - STAG3L4 ENSG00000106610 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:66773998 chr7:66773997 . . 0 20 hm7G_associated_SNPs_20015 0 0 1 0 1 STAG3L4 chr7:66773922 3'AG 66773922 Downstream 76bp 18686 chr15 45723234 45723234 1 + G T THCA 45723235 + 45723215 45723255 41 TGTTCATGACTGTGGCGGCGGGTGGAGCCTCATCTTTCGCT TGTTCATGACTGTGGCGGCTGGTGGAGCCTCATCTTTCGCT < 41bp 0.606112923598217 0.864019288598968 NA NA prediction 0.515812730001502 Functional Gain - C15orf48 ENSG00000166920 CDS Human protein_coding chr15:45723235 chr15:45723234 synonymous SNV . 0 20 hm7G_associated_SNPs_20016 0 0 0 0 2 C15orf48 chr15:45723199 3'AG 45723199 Downstream 36bp 18687 chr15 45723234 45723234 1 + G T THCA 45723235 + 45723215 45723255 41 TGTTCATGACTGTGGCGGCGGGTGGAGCCTCATCTTTCGCT TGTTCATGACTGTGGCGGCTGGTGGAGCCTCATCTTTCGCT < 41bp 0.606112923598217 0.864019288598968 NA NA prediction 0.515812730001502 Functional Gain - C15orf48 ENSG00000166920 CDS Human protein_coding chr15:45723235 chr15:45723234 synonymous SNV . 0 20 hm7G_associated_SNPs_20016 0 0 0 0 2 C15orf48 chr15:45723284 5'GT 45723284 Upstream 51bp 18688 chr1 87041018 87041018 1 + G T LUAD 87041019 + 87040999 87041039 41 CTGTTGAAACTTTTAGGTGGGCACTTGGGCATACAATCTTC CTGTTGAAACTTTTAGGTGTGCACTTGGGCATACAATCTTC < 41bp 0.587443227919547 0.845333659362833 NA NA prediction 0.515780862886572 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87041019 chr1:87041018 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_20018 0 0 0 0 1 CLCA4 chr1:87041015 3'AG 87041015 Downstream 4bp 18689 chr4 123332428 123332428 1 + G T LIHC 123332429 + 123332409 123332449 41 GCAAAAATCCTGCTATGATGGAAAAATCAATATTTTGTACA GCAAAAATCCTGCTATGATTGAAAAATCAATATTTTGTACA < 41bp 0.44691994699358 0.757890221265124 NA NA prediction 0.515780442530248 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123332429 chr4:123332428 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20019 0 0 0 0 2 ADAD1 chr4:123332377 3'AG 123332377 Downstream 52bp 18690 chr4 123332428 123332428 1 + G T LIHC 123332429 + 123332409 123332449 41 GCAAAAATCCTGCTATGATGGAAAAATCAATATTTTGTACA GCAAAAATCCTGCTATGATTGAAAAATCAATATTTTGTACA < 41bp 0.44691994699358 0.757890221265124 NA NA prediction 0.515780442530248 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123332429 chr4:123332428 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20019 0 0 0 0 2 ADAD1 chr4:123332410 3'AG 123332410 Downstream 19bp 18691 chr15 89172627 89172627 1 + G T LUSC 89172628 + 89172608 89172648 41 GGGTCTCTCTAAAGGACCTGGCCCTGCAGCTGCTGCACAAG GGGTCTCTCTAAAGGACCTTGCCCTGCAGCTGCTGCACAAG < 41bp 0.403288440395831 0.757887357574396 NA NA prediction 0.515774715148792 Functional Gain - AEN ENSG00000181026 CDS Human protein_coding chr15:89172628 chr15:89172627 synonymous SNV . 0 20 hm7G_associated_SNPs_20020 0 0 1 0 1 AEN chr15:89172657 5'GT 89172657 Upstream 31bp 18692 chr1 76378473 76378473 1 + G T LUSC 76378474 + 76378454 76378494 41 CTGCTCGAAACTCTCAATTGGATCCAGACAGTTTACGAATA CTGCTCGAAACTCTCAATTTGATCCAGACAGTTTACGAATA < 41bp 0.536849045131033 0.794726217912383 NA NA prediction 0.515754345562699 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76378474 chr1:76378473 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_20021 0 0 0 0 1 MSH4 chr1:76378381 3'AG 76378381 Downstream 93bp 18693 chr7 29943940 29943940 1 + G T SKCM 29943941 + 29943921 29943961 41 GCTCCAAGCGGAAGCAGTCGGGCAGAGCTCTGATGACATCA GCTCCAAGCGGAAGCAGTCTGGCAGAGCTCTGATGACATCA < 41bp 0.610396941769886 0.86827185493353 NA NA prediction 0.515749826327288 Functional Gain - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29943941 chr7:29943940 nonsynonymous SNV 0.093 3 20 hm7G_associated_SNPs_20022 0 0 1 0 2 WIPF3 chr7:29943902 3'AG 29943902 Downstream 39bp 18694 chr7 29943940 29943940 1 + G T SKCM 29943941 + 29943921 29943961 41 GCTCCAAGCGGAAGCAGTCGGGCAGAGCTCTGATGACATCA GCTCCAAGCGGAAGCAGTCTGGCAGAGCTCTGATGACATCA < 41bp 0.610396941769886 0.86827185493353 NA NA prediction 0.515749826327288 Functional Gain - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29943941 chr7:29943940 nonsynonymous SNV 0.093 3 20 hm7G_associated_SNPs_20022 0 0 1 0 2 WIPF3 chr7:29943978 5'GT 29943978 Upstream 39bp 18695 chr6 10956459 10956459 1 + G T LGG 10956460 + 10956440 10956480 41 GAAAACTTCACTAAAAAACGGAAAAGAAAATATGAGGTAGT GAAAACTTCACTAAAAAACTGAAAAGAAAATATGAGGTAGT < 41bp 0.576140399572429 0.834010563258801 NA NA prediction 0.515740327372744 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10956460 chr6:10956459 nonsynonymous SNV 0.026 0 20 hm7G_associated_SNPs_20023 0 0 0 0 2 SYCP2L chr6:10956369 3'AG 10956369 Downstream 91bp 18696 chr6 10956459 10956459 1 + G T LGG 10956460 + 10956440 10956480 41 GAAAACTTCACTAAAAAACGGAAAAGAAAATATGAGGTAGT GAAAACTTCACTAAAAAACTGAAAAGAAAATATGAGGTAGT < 41bp 0.576140399572429 0.834010563258801 NA NA prediction 0.515740327372744 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10956460 chr6:10956459 nonsynonymous SNV 0.026 0 20 hm7G_associated_SNPs_20023 0 0 0 0 2 SYCP2L chr6:10956475 5'GT 10956475 Upstream 17bp 18697 chr1 17285242 17285242 1 + G T ESCA 17285243 + 17285223 17285263 41 GCCTGGAGGTGATGCGGCAGGAGGTAACTGAGCAGGCGGGC GCCTGGAGGTGATGCGGCATGAGGTAACTGAGCAGGCGGGC < 41bp 0.427835034864311 0.757867702684798 NA NA prediction 0.515735405369597 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17285243 chr1:17285242 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_20024 0 0 0 0 1 CROCC chr1:17285245 5'GT 17285245 Upstream 4bp 18698 chr9 95766411 95766411 1 + G T LUSC 95766412 + 95766392 95766432 41 AGCTGAAGACGCGGATCACGGAGGAGTGGTGAGTACCATCT AGCTGAAGACGCGGATCACTGAGGAGTGGTGAGTACCATCT < 41bp 0.421194075236178 0.757851177304794 NA NA prediction 0.515702354609589 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95766412 chr9:95766411 synonymous SNV . 0 20 hm7G_associated_SNPs_20026 0 0 0 0 1 FGD3 chr9:95766419 5'GT 95766419 Upstream 9bp 18699 chr4 74351593 74351593 1 + G T rs187546247 74351594 + 74351574 74351614 41 TATAGAATAATGTTTTACAGGAAAAAATATGTGCTATGGAG TATAGAATAATGTTTTACATGAAAAAATATGTGCTATGGAG < 41bp 0.574706368362857 0.832539103371119 NA NA prediction 0.515665470016524 Functional Gain - AFM ENSG00000079557 CDS Human protein_coding chr4:74351594 chr4:74351593 nonsynonymous SNV 0.033 3 20 hm7G_associated_SNPs_20029 0 0 0 0 1 AFM chr4:74351579 3'AG 74351579 Downstream 15bp 18700 chr4 141446614 141446614 1 + G T CESC 141446615 + 141446595 141446635 41 TTGTGGGAGTTCTTCTATGGGCACTTTTTTCGATTTTGGAT TTGTGGGAGTTCTTCTATGTGCACTTTTTTCGATTTTGGAT < 41bp 0.447737491388596 0.757828863788873 NA NA prediction 0.515657727577747 Functional Gain - ELMOD2 ENSG00000179387 CDS Human protein_coding chr4:141446615 chr4:141446614 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_20030 0 0 1 0 1 ELMOD2 chr4:141446574 3'AG 141446574 Downstream 41bp 18701 chr14 20822321 20822321 1 + G T STAD 20822322 + 20822302 20822342 41 AGCTAGATCTTCGGGTACAGGAGTTAATAAAGTTGATCTGT AGCTAGATCTTCGGGTACATGAGTTAATAAAGTTGATCTGT < 41bp 0.601184840946971 0.859009026342649 NA NA prediction 0.515648370791356 Functional Gain - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20822322 chr14:20822321 nonsynonymous SNV 0.839 3 20 hm7G_associated_SNPs_20031 0 0 1 0 1 PARP2 chr14:20822406 5'GT 20822406 Upstream 86bp 18702 chr7 130143796 130143796 1 + G T SKCM 130143797 + 130143777 130143817 41 ATTTTATCTATGGGCCATTGGATCCTGTAAATCCCTATCCA ATTTTATCTATGGGCCATTTGATCCTGTAAATCCCTATCCA < 41bp 0.606359077366845 0.864179032700005 NA NA prediction 0.515639910666321 Functional Gain - MEST ENSG00000106484 CDS Human protein_coding chr7:130143797 chr7:130143796 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_20032 0 0 0 0 2 MEST chr7:130143774 3'AG 130143774 Downstream 23bp 18703 chr7 130143796 130143796 1 + G T SKCM 130143797 + 130143777 130143817 41 ATTTTATCTATGGGCCATTGGATCCTGTAAATCCCTATCCA ATTTTATCTATGGGCCATTTGATCCTGTAAATCCCTATCCA < 41bp 0.606359077366845 0.864179032700005 NA NA prediction 0.515639910666321 Functional Gain - MEST ENSG00000106484 CDS Human protein_coding chr7:130143797 chr7:130143796 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_20032 0 0 0 0 2 MEST chr7:130143837 5'GT 130143837 Upstream 42bp 18704 chr16 67469927 67469927 1 + G T UCEC 67469928 + 67469908 67469948 41 ATGCGGAGCTGTCTCCAGTGGCCACTTTCCGTAGCTGCATG ATGCGGAGCTGTCTCCAGTTGCCACTTTCCGTAGCTGCATG < 41bp 0.408995452579093 0.757819559943943 NA NA prediction 0.515639119887885 Functional Gain - HSD11B2 ENSG00000176387 CDS Human protein_coding chr16:67469928 chr16:67469927 synonymous SNV . 0 20 hm7G_associated_SNPs_20033 0 0 0 0 1 HSD11B2 chr16:67469860 3'AG 67469860 Downstream 68bp 18705 chr7 98256591 98256591 1 + G T STAD 98256592 + 98256572 98256612 41 CGGAGAGAAGCTGGGCACTGGGGAGAACCTGGCCCCCTGGC CGGAGAGAAGCTGGGCACTTGGGAGAACCTGGCCCCCTGGC < 41bp 0.62147291683854 0.87928865609309 NA NA prediction 0.515631478509101 Functional Gain - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98256592 chr7:98256591 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20034 0 0 0 0 1 NPTX2 chr7:98256656 5'GT 98256656 Upstream 66bp 18706 chr19 36363438 36363438 1 + G T CESC 36363439 + 36363419 36363459 41 TATTTACTTTGGCATGCCTGGGGAAATCAGTGAGCACGAGG TATTTACTTTGGCATGCCTTGGGAAATCAGTGAGCACGAGG < 41bp 0.62793046235193 0.885738681301789 NA NA prediction 0.515616437899718 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36363439 chr19:36363438 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20035 0 0 1 0 2 APLP1 chr19:36363385 3'AG 36363385 Downstream 54bp 18707 chr19 36363438 36363438 1 + G T CESC 36363439 + 36363419 36363459 41 TATTTACTTTGGCATGCCTGGGGAAATCAGTGAGCACGAGG TATTTACTTTGGCATGCCTTGGGAAATCAGTGAGCACGAGG < 41bp 0.62793046235193 0.885738681301789 NA NA prediction 0.515616437899718 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36363439 chr19:36363438 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20035 0 0 1 0 2 APLP1 chr19:36363515 5'GT 36363515 Upstream 78bp 18708 chr13 42888063 42888063 1 + G T UCEC 42888064 + 42888044 42888084 41 ATAAAGATGAAGAGCATGAGGACGAAGTAGAAGGTAATTTG ATAAAGATGAAGAGCATGATGACGAAGTAGAAGGTAATTTG < 41bp 0.577110913922243 0.834917233635562 NA NA prediction 0.515612639426638 Functional Gain - AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42888064 chr13:42888063 nonsynonymous SNV 0.602 1 20 hm7G_associated_SNPs_20036 0 0 1 0 2 AKAP11 chr13:42888030 3'AG 42888030 Downstream 34bp 18709 chr13 42888063 42888063 1 + G T UCEC 42888064 + 42888044 42888084 41 ATAAAGATGAAGAGCATGAGGACGAAGTAGAAGGTAATTTG ATAAAGATGAAGAGCATGATGACGAAGTAGAAGGTAATTTG < 41bp 0.577110913922243 0.834917233635562 NA NA prediction 0.515612639426638 Functional Gain - AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42888064 chr13:42888063 nonsynonymous SNV 0.602 1 20 hm7G_associated_SNPs_20036 0 0 1 0 2 AKAP11 chr13:42888076 5'GT 42888076 Upstream 14bp 18710 chr9 130473028 130473028 1 + G T COAD 130473029 + 130473009 130473049 41 AGAAGTCGGTGCTGGACAAGGACAGGTGGGCAAGCGGGGCA AGAAGTCGGTGCTGGACAATGACAGGTGGGCAAGCGGGGCA < 41bp 0.607960606277293 0.865759473648484 NA NA prediction 0.515597734742381 Functional Gain - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130473029 chr9:130473028 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20037 0 0 0 0 1 CFAP157 chr9:130473033 5'GT 130473033 Upstream 6bp 18711 chr3 39130741 39130741 1 + G T THCA 39130742 + 39130722 39130762 41 GCTGCTCTGCCGAGATTCCGGGGGTGAGACTGAGTCTATGC GCTGCTCTGCCGAGATTCCTGGGGTGAGACTGAGTCTATGC < 41bp 0.607146903177098 0.86493500479882 NA NA prediction 0.515576203243444 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39130742 chr3:39130741 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20038 0 0 1 0 2 WDR48 chr3:39130722 3'AG 39130722 Downstream 20bp 18712 chr3 39130741 39130741 1 + G T THCA 39130742 + 39130722 39130762 41 GCTGCTCTGCCGAGATTCCGGGGGTGAGACTGAGTCTATGC GCTGCTCTGCCGAGATTCCTGGGGTGAGACTGAGTCTATGC < 41bp 0.607146903177098 0.86493500479882 NA NA prediction 0.515576203243444 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39130742 chr3:39130741 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20038 0 0 1 0 2 WDR48 chr3:39130809 5'GT 39130809 Upstream 69bp 18713 chr16 81737574 81737574 1 + G T BRCA 81737575 + 81737555 81737595 41 GGCTCGTTTGCTGAGCTCCGGCTCCTTCGGAAACCTGGAGA GGCTCGTTTGCTGAGCTCCTGCTCCTTCGGAAACCTGGAGA < 41bp 0.418629438432817 0.75778096323047 NA NA prediction 0.515561926460939 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81737575 chr16:81737574 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_20039 0 0 1 0 1 CMIP chr16:81737544 3'AG 81737544 Downstream 31bp 18714 chr2 42867314 42867314 1 + G T LUSC 42867315 + 42867295 42867335 41 TTTTTTCTTTTTCAACAGGGGAAAGTGCAGTGTTGCCCTTC TTTTTTCTTTTTCAACAGGTGAAAGTGCAGTGTTGCCCTTC < 41bp 0.434683162981295 0.757774836703707 NA NA prediction 0.515549673407414 Functional Gain - MTA3 ENSG00000057935 CDS Human protein_coding chr2:42867315 chr2:42867314 stopgain 0.991 1 20 hm7G_associated_SNPs_20041 0 0 1 0 2 MTA3 chr2:42867313 3'AG 42867313 Downstream 2bp 18715 chr2 42867314 42867314 1 + G T LUSC 42867315 + 42867295 42867335 41 TTTTTTCTTTTTCAACAGGGGAAAGTGCAGTGTTGCCCTTC TTTTTTCTTTTTCAACAGGTGAAAGTGCAGTGTTGCCCTTC < 41bp 0.434683162981295 0.757774836703707 NA NA prediction 0.515549673407414 Functional Gain - MTA3 ENSG00000057935 CDS Human protein_coding chr2:42867315 chr2:42867314 stopgain 0.991 1 20 hm7G_associated_SNPs_20041 0 0 1 0 2 MTA3 chr2:42867376 5'GT 42867376 Upstream 63bp 18716 chr7 56049217 56049217 1 + G T LIHC 56049218 + 56049198 56049238 41 AACACTACCCTTGTACTTTGGTGGGGACTTGGAACACGTGG AACACTACCCTTGTACTTTTGTGGGGACTTGGAACACGTGG < 41bp 0.596025556255693 0.853789677564501 NA NA prediction 0.515528242617617 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56049218 chr7:56049217 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20042 0 0 1 0 2 NIPSNAP2 chr7:56049166 3'AG 56049166 Downstream 52bp 18717 chr7 56049217 56049217 1 + G T LIHC 56049218 + 56049198 56049238 41 AACACTACCCTTGTACTTTGGTGGGGACTTGGAACACGTGG AACACTACCCTTGTACTTTTGTGGGGACTTGGAACACGTGG < 41bp 0.596025556255693 0.853789677564501 NA NA prediction 0.515528242617617 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56049218 chr7:56049217 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20042 0 0 1 0 2 NIPSNAP2 chr7:56049260 5'GT 56049260 Upstream 44bp 18718 chr3 119013847 119013847 1 + G T COAD 119013848 + 119013828 119013868 41 ATCTGGAAAGCTCGGGACAGGATGGTAATGTGCCTTGGCCT ATCTGGAAAGCTCGGGACATGATGGTAATGTGCCTTGGCCT < 41bp 0.439042945579127 0.757745258529962 NA NA prediction 0.515490517059924 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119013848 chr3:119013847 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20043 0 0 0 0 1 ARHGAP31 chr3:119013851 5'GT 119013851 Upstream 5bp 18719 chr1 146724358 146724358 1 + G T UCEC 146724359 + 146724339 146724379 41 TCAGAATGGCTGTATCCTGGGAGATGAGATGGGCCTGGGGA TCAGAATGGCTGTATCCTGTGAGATGAGATGGGCCTGGGGA < 41bp 0.607727220848991 0.86545902510805 NA NA prediction 0.515463608518118 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146724359 chr1:146724358 stopgain 1.000 0 20 hm7G_associated_SNPs_20045 0 0 1 0 2 CHD1L chr1:146724278 3'AG 146724278 Downstream 81bp 18720 chr1 146724358 146724358 1 + G T UCEC 146724359 + 146724339 146724379 41 TCAGAATGGCTGTATCCTGGGAGATGAGATGGGCCTGGGGA TCAGAATGGCTGTATCCTGTGAGATGAGATGGGCCTGGGGA < 41bp 0.607727220848991 0.86545902510805 NA NA prediction 0.515463608518118 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146724359 chr1:146724358 stopgain 1.000 0 20 hm7G_associated_SNPs_20045 0 0 1 0 2 CHD1L chr1:146724390 5'GT 146724390 Upstream 33bp 18721 chr2 46985735 46985735 1 + G T COAD 46985736 + 46985716 46985756 41 AGAATCTCTTCGGTCATGAGGGAGGAAGCCGTAGTGAAAAT AGAATCTCTTCGGTCATGATGGAGGAAGCCGTAGTGAAAAT < 41bp 0.580148955410421 0.837871806501886 NA NA prediction 0.515445702182929 Functional Gain - SOCS5 ENSG00000171150 CDS Human protein_coding chr2:46985736 chr2:46985735 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_20047 0 0 1 0 1 SOCS5 chr2:46985658 3'AG 46985658 Downstream 78bp 18722 chr6 160575907 160575907 1 + G T rs35270274 160575908 + 160575888 160575928 41 TTCATAGTCTTCAGGCTGAGGGAGGTCTGGCAAGCCTTGCC TTCATAGTCTTCAGGCTGATGGAGGTCTGGCAAGCCTTGCC < 41bp 0.613287126598449 0.87100793594972 NA NA prediction 0.515441618702544 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160575908 chr6:160575907 nonsynonymous SNV 0.153 0 20 hm7G_associated_SNPs_20048 0 0 0 0 2 SLC22A1 chr6:160575830 3'AG 160575830 Downstream 78bp 18723 chr6 160575907 160575907 1 + G T rs35270274 160575908 + 160575888 160575928 41 TTCATAGTCTTCAGGCTGAGGGAGGTCTGGCAAGCCTTGCC TTCATAGTCTTCAGGCTGATGGAGGTCTGGCAAGCCTTGCC < 41bp 0.613287126598449 0.87100793594972 NA NA prediction 0.515441618702544 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160575908 chr6:160575907 nonsynonymous SNV 0.153 0 20 hm7G_associated_SNPs_20048 0 0 0 0 2 SLC22A1 chr6:160575942 5'GT 160575942 Upstream 36bp 18724 chr14 103807359 103807359 1 + G T SKCM 103807360 + 103807340 103807380 41 CTGTAAAGTCAGACAACAAGGATGACGACATCGATATTGAT CTGTAAAGTCAGACAACAATGATGACGACATCGATATTGAT < 41bp 0.583918442111738 0.841620549787996 NA NA prediction 0.515404215352516 Functional Gain - EIF5 ENSG00000100664 CDS Human protein_coding chr14:103807360 chr14:103807359 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20050 0 0 1 0 1 EIF5 chr14:103807300 3'AG 103807300 Downstream 60bp 18725 chr1 245005295 245005295 1 + G T UCEC 245005296 + 245005276 245005316 41 GAAAATACTCCCTGCGCCCGGCATTCAATATTGTATGGTTC GAAAATACTCCCTGCGCCCTGCATTCAATATTGTATGGTTC < 41bp 0.606215496621306 0.863906549280416 NA NA prediction 0.51538210531822 Functional Gain - COX20 ENSG00000203667 CDS Human protein_coding chr1:245005296 chr1:245005295 nonsynonymous SNV 0.544 4 20 hm7G_associated_SNPs_20051 0 0 0 0 2 COX20 chr1:245005246 3'AG 245005246 Downstream 50bp 18726 chr1 245005295 245005295 1 + G T UCEC 245005296 + 245005276 245005316 41 GAAAATACTCCCTGCGCCCGGCATTCAATATTGTATGGTTC GAAAATACTCCCTGCGCCCTGCATTCAATATTGTATGGTTC < 41bp 0.606215496621306 0.863906549280416 NA NA prediction 0.51538210531822 Functional Gain - COX20 ENSG00000203667 CDS Human protein_coding chr1:245005296 chr1:245005295 nonsynonymous SNV 0.544 4 20 hm7G_associated_SNPs_20051 0 0 0 0 2 COX20 chr1:245005360 5'GT 245005360 Upstream 66bp 18727 chr10 86185556 86185556 1 + G T KIRC 86185557 + 86185537 86185577 41 CAGCCTCAGGAAGGTTTTTGGAAAAGGCCACCCCAGAGGTG CAGCCTCAGGAAGGTTTTTTGAAAAGGCCACCCCAGAGGTG < 41bp 0.435083275470413 0.757681960649487 NA NA prediction 0.515363921298974 Functional Gain - CCSER2 ENSG00000107771 CDS Human protein_coding chr10:86185557 chr10:86185556 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20052 0 0 1 0 2 CCSER2 chr10:86185487 3'AG 86185487 Downstream 70bp 18728 chr10 86185556 86185556 1 + G T KIRC 86185557 + 86185537 86185577 41 CAGCCTCAGGAAGGTTTTTGGAAAAGGCCACCCCAGAGGTG CAGCCTCAGGAAGGTTTTTTGAAAAGGCCACCCCAGAGGTG < 41bp 0.435083275470413 0.757681960649487 NA NA prediction 0.515363921298974 Functional Gain - CCSER2 ENSG00000107771 CDS Human protein_coding chr10:86185557 chr10:86185556 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20052 0 0 1 0 2 CCSER2 chr10:86185649 5'GT 86185649 Upstream 94bp 18729 chr14 24114366 24114366 1 + G T UCEC 24114367 + 24114347 24114387 41 CCAGGATTGGGGAGTCAGAGGACTGTGCAGGAATCGTGTCC CCAGGATTGGGGAGTCAGATGACTGTGCAGGAATCGTGTCC < 41bp 0.602912258218 0.860589634962373 NA NA prediction 0.515354753488744 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24114367 chr14:24114366 nonsynonymous SNV 0.869 4 20 hm7G_associated_SNPs_20053 0 0 1 0 1 DHRS2 chr14:24114351 3'AG 24114351 Downstream 16bp 18730 chr1 117948199 117948199 1 + G T GBM 117948200 + 117948180 117948220 41 CATGCTTGGGATAACTATAGGACATATGGGTGGGGACATAA CATGCTTGGGATAACTATATGACATATGGGTGGGGACATAA < 41bp 0.576516908814104 0.834180939168004 NA NA prediction 0.5153280607078 Functional Gain - MAN1A2 ENSG00000198162 CDS Human protein_coding chr1:117948200 chr1:117948199 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_20055 0 0 1 0 2 MAN1A2 chr1:117948171 3'AG 117948171 Downstream 29bp 18731 chr1 117948199 117948199 1 + G T GBM 117948200 + 117948180 117948220 41 CATGCTTGGGATAACTATAGGACATATGGGTGGGGACATAA CATGCTTGGGATAACTATATGACATATGGGTGGGGACATAA < 41bp 0.576516908814104 0.834180939168004 NA NA prediction 0.5153280607078 Functional Gain - MAN1A2 ENSG00000198162 CDS Human protein_coding chr1:117948200 chr1:117948199 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_20055 0 0 1 0 2 MAN1A2 chr1:117948267 5'GT 117948267 Upstream 69bp 18732 chr2 242681886 242681886 1 + G T LUSC 242681887 + 242681867 242681907 41 ACCTGGCCGTGAACCCACAGGGGGGCAACACAGGCATGGTG ACCTGGCCGTGAACCCACATGGGGGCAACACAGGCATGGTG < 41bp 0.409769520954782 0.757644230388869 NA NA prediction 0.515288460777737 Functional Gain - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242681887 chr2:242681886 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_20058 0 0 1 0 1 D2HGDH chr2:242681850 3'AG 242681850 Downstream 37bp 18733 chr10 12148334 12148334 1 + G T BLCA 12148335 + 12148315 12148355 41 AGTTACTGCCCCTGTGGGAGGCACAGTTTGGCGATTTCTTC AGTTACTGCCCCTGTGGGATGCACAGTTTGGCGATTTCTTC < 41bp 0.611453030203657 0.869087725164177 NA NA prediction 0.515269389921039 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148335 chr10:12148334 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_20059 0 0 1 0 2 DHTKD1 chr10:12148245 3'AG 12148245 Downstream 90bp 18734 chr10 12148334 12148334 1 + G T BLCA 12148335 + 12148315 12148355 41 AGTTACTGCCCCTGTGGGAGGCACAGTTTGGCGATTTCTTC AGTTACTGCCCCTGTGGGATGCACAGTTTGGCGATTTCTTC < 41bp 0.611453030203657 0.869087725164177 NA NA prediction 0.515269389921039 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148335 chr10:12148334 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_20059 0 0 1 0 2 DHTKD1 chr10:12148395 5'GT 12148395 Upstream 62bp 18735 chr17 7810789 7810789 1 + G T STAD 7810790 + 7810770 7810810 41 CCTGAACCTGGGTACCGTGGGGACAGAGAGAAGTCAGGTGG CCTGAACCTGGGTACCGTGTGGACAGAGAGAAGTCAGGTGG < 41bp 0.614608064406716 0.872212822618933 NA NA prediction 0.515209516424432 Functional Gain - CHD3 ENSG00000170004 CDS Human protein_coding chr17:7810790 chr17:7810789 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_20062 0 0 1 0 1 CHD3 chr17:7810806 5'GT 7810806 Upstream 18bp 18736 chr5 35867411 35867411 1 + G T LUSC 35867412 + 35867392 35867432 41 CTTTTTATTCCTACAGTGGGGCCCTCGTGGAGGTAAAGTGC CTTTTTATTCCTACAGTGGTGCCCTCGTGGAGGTAAAGTGC < 41bp 0.597412056981545 0.854994249584385 NA NA prediction 0.515164385205679 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35867412 chr5:35867411 synonymous SNV . 0 20 hm7G_associated_SNPs_20065 0 0 0 0 1 IL7R chr5:35867408 3'AG 35867408 Downstream 4bp 18737 chrX 153694767 153694767 1 + G T UCEC 153694768 + 153694748 153694788 41 CCGTGGCCCGGCGTCCGGGGGCACACGGCTTACCATCTCAG CCGTGGCCCGGCGTCCGGGTGCACACGGCTTACCATCTCAG < 41bp 0.407304419504091 0.757579259589013 NA NA prediction 0.515158519178026 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153694768 chrX:153694767 nonsynonymous SNV 0.454 5 20 hm7G_associated_SNPs_20067 0 0 1 0 2 PLXNA3 chrX:153694719 3'AG 153694719 Downstream 49bp 18738 chrX 153694767 153694767 1 + G T UCEC 153694768 + 153694748 153694788 41 CCGTGGCCCGGCGTCCGGGGGCACACGGCTTACCATCTCAG CCGTGGCCCGGCGTCCGGGTGCACACGGCTTACCATCTCAG < 41bp 0.407304419504091 0.757579259589013 NA NA prediction 0.515158519178026 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153694768 chrX:153694767 nonsynonymous SNV 0.454 5 20 hm7G_associated_SNPs_20067 0 0 1 0 2 PLXNA3 chrX:153694855 5'GT 153694855 Upstream 89bp 18739 chr10 7769035 7769035 1 + G T UCEC 7769036 + 7769016 7769056 41 TTTCAGCTACAAAAACACAGGTTGCAGATGCCAAGAGGTAT TTTCAGCTACAAAAACACATGTTGCAGATGCCAAGAGGTAT < 41bp 0.592006506835767 0.849572282060109 NA NA prediction 0.515131550448684 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7769036 chr10:7769035 nonsynonymous SNV 0.958 1 20 hm7G_associated_SNPs_20069 0 0 0 0 1 ITIH2 chr10:7769081 5'GT 7769081 Upstream 47bp 18740 chr14 65199611 65199611 1 + G T LIHC 65199612 + 65199592 65199632 41 AATGTGCGCCAGGGGCGCCGGCAATCTGGTAAGAGAAGGGC AATGTGCGCCAGGGGCGCCTGCAATCTGGTAAGAGAAGGGC < 41bp 0.626350414910924 0.883869211661913 NA NA prediction 0.515037593501978 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65199612 chr14:65199611 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20072 0 0 1 0 2 PLEKHG3 chr14:65199521 3'AG 65199521 Downstream 91bp 18741 chr14 65199611 65199611 1 + G T LIHC 65199612 + 65199592 65199632 41 AATGTGCGCCAGGGGCGCCGGCAATCTGGTAAGAGAAGGGC AATGTGCGCCAGGGGCGCCTGCAATCTGGTAAGAGAAGGGC < 41bp 0.626350414910924 0.883869211661913 NA NA prediction 0.515037593501978 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65199612 chr14:65199611 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20072 0 0 1 0 2 PLEKHG3 chr14:65199619 5'GT 65199619 Upstream 9bp 18742 chr7 94055816 94055816 1 + G T PAAD 94055817 + 94055797 94055837 41 TGGCTTAAAGGGACACAATGGATTGCAAGGTCTGCCTGGTA TGGCTTAAAGGGACACAATTGATTGCAAGGTCTGCCTGGTA < 41bp 0.4236000063729 0.757484219112129 NA NA prediction 0.514968438224259 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94055817 chr7:94055816 stopgain 0.070 1 20 hm7G_associated_SNPs_20073 0 0 0 0 2 COL1A2 chr7:94055735 3'AG 94055735 Downstream 82bp 18743 chr7 94055816 94055816 1 + G T PAAD 94055817 + 94055797 94055837 41 TGGCTTAAAGGGACACAATGGATTGCAAGGTCTGCCTGGTA TGGCTTAAAGGGACACAATTGATTGCAAGGTCTGCCTGGTA < 41bp 0.4236000063729 0.757484219112129 NA NA prediction 0.514968438224259 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94055817 chr7:94055816 stopgain 0.070 1 20 hm7G_associated_SNPs_20073 0 0 0 0 2 COL1A2 chr7:94055842 5'GT 94055842 Upstream 27bp 18744 chr5 110411672 110411672 1 + G T ESCA 110411673 + 110411653 110411693 41 ACTCAGGCAATGAAGAAGAGGAGAAAAAGGAAAGTCACAAC ACTCAGGCAATGAAGAAGATGAGAAAAAGGAAAGTCACAAC < 41bp 0.56581533250583 0.823295498098853 NA NA prediction 0.514960331186045 Functional Gain - TSLP ENSG00000145777 CDS Human protein_coding chr5:110411673 chr5:110411672 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_20074 0 0 0 0 1 TSLP chr5:110411644 3'AG 110411644 Downstream 29bp 18745 chr1 186269344 186269344 1 + G T LUAD 186269345 + 186269325 186269365 41 TCAAGAGAGTCTGCACTGCGGGTAAGTCCTGAGAGCGGGTG TCAAGAGAGTCTGCACTGCTGGTAAGTCCTGAGAGCGGGTG < 41bp 0.607503331896618 0.86497433826704 NA NA prediction 0.514942012740844 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186269345 chr1:186269344 synonymous SNV . 0 20 hm7G_associated_SNPs_20075 0 0 0 0 1 PRG4 chr1:186269345 5'GT 186269345 Upstream 2bp 18746 chr3 51978223 51978223 1 + G T LUAD 51978224 + 51978204 51978244 41 TTCACCTGCTGGAACCACTGGGGCCGTGTGGTGAGTGCCCT TTCACCTGCTGGAACCACTTGGGCCGTGTGGTGAGTGCCCT < 41bp 0.617718731348586 0.875177018750857 NA NA prediction 0.514916574804541 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978224 chr3:51978223 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20078 0 0 0 0 1 PARP3 chr3:51978233 5'GT 51978233 Upstream 11bp 18747 chr21 47542798 47542798 1 + G T STAD 47542799 + 47542779 47542819 41 CCTGTCACAGGGAGGCCGAGGCGACTTTGGCTTGAAAGGAG CCTGTCACAGGGAGGCCGATGCGACTTTGGCTTGAAAGGAG < 41bp 0.413475993463445 0.757456137825094 NA NA prediction 0.514912275650188 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47542799 chr21:47542798 nonsynonymous SNV 0.969 5 20 hm7G_associated_SNPs_20079 0 0 0 0 2 COL6A2 chr21:47542789 3'AG 47542789 Downstream 10bp 18748 chr21 47542798 47542798 1 + G T STAD 47542799 + 47542779 47542819 41 CCTGTCACAGGGAGGCCGAGGCGACTTTGGCTTGAAAGGAG CCTGTCACAGGGAGGCCGATGCGACTTTGGCTTGAAAGGAG < 41bp 0.413475993463445 0.757456137825094 NA NA prediction 0.514912275650188 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47542799 chr21:47542798 nonsynonymous SNV 0.969 5 20 hm7G_associated_SNPs_20079 0 0 0 0 2 COL6A2 chr21:47542851 5'GT 47542851 Upstream 54bp 18749 chr1 162740099 162740099 1 + G T UCEC 162740100 + 162740080 162740120 41 CTTCTCTTCCAGGCTTCTCGGAGGATGCTGGATGATGAAAT CTTCTCTTCCAGGCTTCTCTGAGGATGCTGGATGATGAAAT < 41bp 0.431049056001478 0.757431421364854 NA NA prediction 0.514862842729708 Functional Gain - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162740100 chr1:162740099 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_20081 0 0 0 0 1 DDR2 chr1:162740092 3'AG 162740092 Downstream 8bp 18750 chr10 112767384 112767384 1 + G T UCEC 112767385 + 112767365 112767405 41 AGCTCACAAAGATCCCTGAGGATGTGTCTGGTCTCGTTTCT AGCTCACAAAGATCCCTGATGATGTGTCTGGTCTCGTTTCT < 41bp 0.437502161314529 0.75741960441488 NA NA prediction 0.514839208829759 Functional Gain - SHOC2 ENSG00000108061 CDS Human protein_coding chr10:112767385 chr10:112767384 nonsynonymous SNV 0.973 3 20 hm7G_associated_SNPs_20083 0 0 1 0 2 SHOC2 chr10:112767289 3'AG 112767289 Downstream 96bp 18751 chr10 112767384 112767384 1 + G T UCEC 112767385 + 112767365 112767405 41 AGCTCACAAAGATCCCTGAGGATGTGTCTGGTCTCGTTTCT AGCTCACAAAGATCCCTGATGATGTGTCTGGTCTCGTTTCT < 41bp 0.437502161314529 0.75741960441488 NA NA prediction 0.514839208829759 Functional Gain - SHOC2 ENSG00000108061 CDS Human protein_coding chr10:112767385 chr10:112767384 nonsynonymous SNV 0.973 3 20 hm7G_associated_SNPs_20083 0 0 1 0 2 SHOC2 chr10:112767411 5'GT 112767411 Upstream 28bp 18752 chr7 933566 933566 1 + G T LIHC 933567 + 933547 933587 41 CATAGGACAGCTGTTCTTCGGCGTCCCGCCCAAGCAGACGT CATAGGACAGCTGTTCTTCTGCGTCCCGCCCAAGCAGACGT < 41bp 0.416400840438718 0.757395811169135 NA NA prediction 0.51479162233827 Functional Gain - GET4 ENSG00000239857 CDS Human protein_coding chr7:933567 chr7:933566 nonsynonymous SNV 0.849 4 20 hm7G_associated_SNPs_20086 0 0 1 0 2 GET4 chr7:933536 3'AG 933536 Downstream 31bp 18753 chr7 933566 933566 1 + G T LIHC 933567 + 933547 933587 41 CATAGGACAGCTGTTCTTCGGCGTCCCGCCCAAGCAGACGT CATAGGACAGCTGTTCTTCTGCGTCCCGCCCAAGCAGACGT < 41bp 0.416400840438718 0.757395811169135 NA NA prediction 0.51479162233827 Functional Gain - GET4 ENSG00000239857 CDS Human protein_coding chr7:933567 chr7:933566 nonsynonymous SNV 0.849 4 20 hm7G_associated_SNPs_20086 0 0 1 0 2 GET4 chr7:933608 5'GT 933608 Upstream 43bp 18754 chr12 4721711 4721711 1 + G T LUAD 4721712 + 4721692 4721732 41 GCTTTGTTGGGGTGCAGATGGGAACCTTCTCTTCGCATGAC GCTTTGTTGGGGTGCAGATTGGAACCTTCTCTTCGCATGAC < 41bp 0.610423755853066 0.867818318725207 NA NA prediction 0.514789125744284 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4721712 chr12:4721711 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_20087 0 0 0 0 1 DYRK4 chr12:4721709 3'AG 4721709 Downstream 3bp 18755 chr6 49437896 49437896 1 + G T KIRC 49437897 + 49437877 49437917 41 TGTTTAGATCAAGATGTCTGGTAAAGCAAATGCTTCCAAGA TGTTTAGATCAAGATGTCTTGTAAAGCAAATGCTTCCAAGA < 41bp 0.570268914453807 0.827653907509688 NA NA prediction 0.514769986111763 Functional Gain - CENPQ ENSG00000031691 CDS Human protein_coding chr6:49437897 chr6:49437896 nonsynonymous SNV 0.970 2 20 hm7G_associated_SNPs_20090 0 0 1 0 2 CENPQ chr6:49437872 3'AG 49437872 Downstream 25bp 18756 chr6 49437896 49437896 1 + G T KIRC 49437897 + 49437877 49437917 41 TGTTTAGATCAAGATGTCTGGTAAAGCAAATGCTTCCAAGA TGTTTAGATCAAGATGTCTTGTAAAGCAAATGCTTCCAAGA < 41bp 0.570268914453807 0.827653907509688 NA NA prediction 0.514769986111763 Functional Gain - CENPQ ENSG00000031691 CDS Human protein_coding chr6:49437897 chr6:49437896 nonsynonymous SNV 0.970 2 20 hm7G_associated_SNPs_20090 0 0 1 0 2 CENPQ chr6:49437991 5'GT 49437991 Upstream 96bp 18757 chr4 130023884 130023884 1 + G T rs35199409 130023885 + 130023865 130023905 41 ATTAGTGCTCCATTTTTCAGGGATCCTCCAGCCCCACTTGG ATTAGTGCTCCATTTTTCATGGATCCTCCAGCCCCACTTGG < 41bp 0.435959828189512 0.757377839274266 NA NA prediction 0.514755678548533 Functional Gain - C4orf33 ENSG00000151470 CDS Human protein_coding chr4:130023885 chr4:130023884 nonsynonymous SNV 0.971 2 20 hm7G_associated_SNPs_20091 0 0 1 0 1 C4orf33 chr4:130023946 5'GT 130023946 Upstream 63bp 18758 chr6 41029549 41029549 1 + G T SKCM 41029550 + 41029530 41029570 41 TCCAAGGCCTTTCAGCCCTGGGAGGACATTCAGGAGAACTT TCCAAGGCCTTTCAGCCCTTGGAGGACATTCAGGAGAACTT < 41bp 0.596765947979427 0.854142214058645 NA NA prediction 0.514752532158435 Functional Gain - APOBEC2 ENSG00000124701 CDS Human protein_coding chr6:41029550 chr6:41029549 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20092 0 0 0 0 1 APOBEC2 chr6:41029631 5'GT 41029631 Upstream 83bp 18759 chr17 67515570 67515570 1 + G T COAD 67515571 + 67515551 67515591 41 TTTATGGCGCACTGTTTCGGGAGGTAGGTGACCCTTCAATT TTTATGGCGCACTGTTTCGTGAGGTAGGTGACCCTTCAATT < 41bp 0.456273161814254 0.757366737787722 NA NA prediction 0.514733475575443 Functional Gain - MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67515571 chr17:67515570 synonymous SNV . 0 20 hm7G_associated_SNPs_20094 0 0 1 0 1 MAP2K6 chr17:67515573 5'GT 67515573 Upstream 4bp 18760 chr15 20488851 20488851 1 + G T HNSC 20488852 + 20488832 20488872 41 TGAAGTTCTTGTTTCTGTTGGGACTGCTGGGTATAACCGTG TGAAGTTCTTGTTTCTGTTTGGACTGCTGGGTATAACCGTG < 41bp 0.572484483130172 0.829837963578932 NA NA prediction 0.514706960897519 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20488852 chr15:20488851 . . 0 20 hm7G_associated_SNPs_20097 0 0 0 0 1 CHEK2P2 chr15:20488912 5'GT 20488912 Upstream 62bp 18761 chr19 13919711 13919711 1 + G T UCEC 13919712 + 13919692 13919732 41 ACTGCTGGCACCTGGACGAGGAGCAGATCCAGGAGCAGGTG ACTGCTGGCACCTGGACGATGAGCAGATCCAGGAGCAGGTG < 41bp 0.618937250623746 0.876290150393602 NA NA prediction 0.514705799539713 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13919712 chr19:13919711 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20098 0 0 0 0 2 ZSWIM4 chr19:13919650 3'AG 13919650 Downstream 62bp 18762 chr19 13919711 13919711 1 + G T UCEC 13919712 + 13919692 13919732 41 ACTGCTGGCACCTGGACGAGGAGCAGATCCAGGAGCAGGTG ACTGCTGGCACCTGGACGATGAGCAGATCCAGGAGCAGGTG < 41bp 0.618937250623746 0.876290150393602 NA NA prediction 0.514705799539713 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13919712 chr19:13919711 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20098 0 0 0 0 2 ZSWIM4 chr19:13919798 5'GT 13919798 Upstream 88bp 18763 chr1 160390875 160390875 1 + G T THCA 160390876 + 160390856 160390896 41 AACTCCACTGGCCAGTCTCGGGCTGTGATTGCAGCGGCAGC AACTCCACTGGCCAGTCTCTGGCTGTGATTGCAGCGGCAGC < 41bp 0.618747799800631 0.87609772497209 NA NA prediction 0.514699850342919 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160390876 chr1:160390875 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_20100 0 0 0 0 1 VANGL2 chr1:160390842 3'AG 160390842 Downstream 34bp 18764 chr17 33513328 33513328 1 + G T COAD 33513329 + 33513309 33513349 41 TGCCTCCAGACAACCCAGTGGTTGGAGATCCTCCAGCGGCT TGCCTCCAGACAACCCAGTTGTTGGAGATCCTCCAGCGGCT < 41bp 0.445061782812732 0.757315953239947 NA NA prediction 0.514631906479894 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33513329 chr17:33513328 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20103 0 0 0 0 1 UNC45B chr17:33513318 3'AG 33513318 Downstream 11bp 18765 chr5 34867153 34867153 1 + G T UCEC 34867154 + 34867134 34867174 41 TGAGGAGGAACCACAACCAGGCCATCCAGTACTTGCAGCAG TGAGGAGGAACCACAACCATGCCATCCAGTACTTGCAGCAG < 41bp 0.594324815443351 0.851634636187892 NA NA prediction 0.514619641489082 Functional Gain - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34867154 chr5:34867153 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_20104 0 0 0 0 1 TTC23L chr5:34867174 5'GT 34867174 Upstream 22bp 18766 chr2 1251115 1251115 1 + G T LUSC 1251116 + 1251096 1251136 41 CAGGTTGTGCATATGGGGTGGGTAAATGAGAAACTCCAAGG CAGGTTGTGCATATGGGGTTGGTAAATGAGAAACTCCAAGG < 41bp 0.432091348727352 0.757286933840408 NA NA prediction 0.514573867680816 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1251116 chr2:1251115 nonsynonymous SNV 0.932 4 20 hm7G_associated_SNPs_20105 0 0 0 0 1 SNTG2 chr2:1251099 3'AG 1251099 Downstream 17bp 18767 chr10 43607611 43607611 1 + G T UCEC 43607612 + 43607592 43607632 41 AGAGACGGCTGGAGTGTGAGGAGTGTGGCGGCCTGGGCTCC AGAGACGGCTGGAGTGTGATGAGTGTGGCGGCCTGGGCTCC < 41bp 0.623803241118529 0.881047800064663 NA NA prediction 0.514489117892267 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43607612 chr10:43607611 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_20107 0 0 0 0 2 RET chr10:43607547 3'AG 43607547 Downstream 65bp 18768 chr10 43607611 43607611 1 + G T UCEC 43607612 + 43607592 43607632 41 AGAGACGGCTGGAGTGTGAGGAGTGTGGCGGCCTGGGCTCC AGAGACGGCTGGAGTGTGATGAGTGTGGCGGCCTGGGCTCC < 41bp 0.623803241118529 0.881047800064663 NA NA prediction 0.514489117892267 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43607612 chr10:43607611 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_20107 0 0 0 0 2 RET chr10:43607672 5'GT 43607672 Upstream 62bp 18769 chr10 1130413 1130413 1 + G T LUAD 1130414 + 1130394 1130434 41 AAGGAGTACATCGGCCACCGGGACGGCATCTGGGATGTCAG AAGGAGTACATCGGCCACCTGGACGGCATCTGGGATGTCAG < 41bp 0.619049412621316 0.87628665818356 NA NA prediction 0.514474491124489 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1130414 chr10:1130413 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_20109 0 0 1 0 2 WDR37 chr10:1130343 3'AG 1130343 Downstream 71bp 18770 chr10 1130413 1130413 1 + G T LUAD 1130414 + 1130394 1130434 41 AAGGAGTACATCGGCCACCGGGACGGCATCTGGGATGTCAG AAGGAGTACATCGGCCACCTGGACGGCATCTGGGATGTCAG < 41bp 0.619049412621316 0.87628665818356 NA NA prediction 0.514474491124489 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1130414 chr10:1130413 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_20109 0 0 1 0 2 WDR37 chr10:1130478 5'GT 1130478 Upstream 66bp 18771 chr20 47679868 47679868 1 + G T UCEC 47679869 + 47679849 47679889 41 TTCAAAAACTATATTAAAAGGAACTGGAGAATTGTAAGTAT TTCAAAAACTATATTAAAATGAACTGGAGAATTGTAAGTAT < 41bp 0.459035736602972 0.75721342480384 NA NA prediction 0.514426849607681 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47679869 chr20:47679868 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_20112 0 0 1 0 1 CSE1L chr20:47679881 5'GT 47679881 Upstream 14bp 18772 chr20 36676823 36676823 1 + G T LUAD 36676824 + 36676804 36676844 41 AGAACGAAGTGTGTATGGCGGCGAGTTCATACAGCAGCTGA AGAACGAAGTGTGTATGGCTGCGAGTTCATACAGCAGCTGA < 41bp 0.610597613242251 0.867787553505893 NA NA prediction 0.514379880527283 Functional Gain - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36676824 chr20:36676823 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20114 0 0 1 0 2 RPRD1B chr20:36676750 3'AG 36676750 Downstream 74bp 18773 chr20 36676823 36676823 1 + G T LUAD 36676824 + 36676804 36676844 41 AGAACGAAGTGTGTATGGCGGCGAGTTCATACAGCAGCTGA AGAACGAAGTGTGTATGGCTGCGAGTTCATACAGCAGCTGA < 41bp 0.610597613242251 0.867787553505893 NA NA prediction 0.514379880527283 Functional Gain - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36676824 chr20:36676823 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20114 0 0 1 0 2 RPRD1B chr20:36676883 5'GT 36676883 Upstream 61bp 18774 chrX 10090693 10090693 1 + G T LGG 10090694 + 10090674 10090714 41 AAGACAGTGCCAAGAGGTTGGAGAGGAGGGCACGCCGCATC AAGACAGTGCCAAGAGGTTTGAGAGGAGGGCACGCCGCATC < 41bp 0.621304585154824 0.878489832495356 NA NA prediction 0.514370494681062 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10090694 chrX:10090693 nonsynonymous SNV 0.947 1 20 hm7G_associated_SNPs_20115 0 0 0 0 2 WWC3 chrX:10090659 3'AG 10090659 Downstream 35bp 18775 chrX 10090693 10090693 1 + G T LGG 10090694 + 10090674 10090714 41 AAGACAGTGCCAAGAGGTTGGAGAGGAGGGCACGCCGCATC AAGACAGTGCCAAGAGGTTTGAGAGGAGGGCACGCCGCATC < 41bp 0.621304585154824 0.878489832495356 NA NA prediction 0.514370494681062 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10090694 chrX:10090693 nonsynonymous SNV 0.947 1 20 hm7G_associated_SNPs_20115 0 0 0 0 2 WWC3 chrX:10090779 5'GT 10090779 Upstream 87bp 18776 chr1 155254371 155254371 1 + G T COAD 155254372 + 155254352 155254392 41 ATTCCCATGCCCTGTTCAAGGCCATGAGCCACATGCTGTGC ATTCCCATGCCCTGTTCAATGCCATGAGCCACATGCTGTGC < 41bp 0.623412430955506 0.88059549282091 NA NA prediction 0.514366123730808 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155254372 chr1:155254371 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20116 0 0 0 0 1 HCN3 chr1:155254330 3'AG 155254330 Downstream 42bp 18777 chr2 56611479 56611479 1 + G T UCEC 56611480 + 56611460 56611500 41 GTCAGGAAACCAGTACAAAGGACCAATGTGAGATGCACTCT GTCAGGAAACCAGTACAAATGACCAATGTGAGATGCACTCT < 41bp 0.57660729210195 0.833780163650047 NA NA prediction 0.514345743096195 Functional Gain - CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56611480 chr2:56611479 stopgain 1.000 1 20 hm7G_associated_SNPs_20117 0 0 0 0 1 CCDC85A chr2:56611401 3'AG 56611401 Downstream 79bp 18778 chr9 138441691 138441691 1 + G T UCEC 138441692 + 138441672 138441712 41 TCCCAGCACAGCAGCCCCCGGGTCTGCACCTCCAGAGCCCA TCCCAGCACAGCAGCCCCCTGGTCTGCACCTCCAGAGCCCA < 41bp 0.598451234419158 0.855614896826341 NA NA prediction 0.514327324814365 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138441692 chr9:138441691 synonymous SNV 0.001 0 20 hm7G_associated_SNPs_20120 0 0 0 0 1 OBP2A chr9:138441683 3'AG 138441683 Downstream 9bp 18779 chr12 101381337 101381337 1 + G T LUAD 101381338 + 101381318 101381358 41 ATCGATAAACAAATAAGCAGGTTTCGGAGATGGTTACCTAA ATCGATAAACAAATAAGCATGTTTCGGAGATGGTTACCTAA < 41bp 0.448878793095541 0.757160824174381 NA NA prediction 0.514321648348761 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381338 chr12:101381337 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20121 0 0 0 3 1 ANO4 chr12:101381317 3'AG 101381317 Downstream 21bp 18780 chr2 191233942 191233942 1 + G T LUAD 191233943 + 191233923 191233963 41 TGTCTATGACATACAGACAGGGGTTCCCCTGATGGGAGTCA TGTCTATGACATACAGACATGGGTTCCCCTGATGGGAGTCA < 41bp 0.617307730130287 0.874461619175687 NA NA prediction 0.514307778090799 Functional Gain - INPP1 ENSG00000151689 CDS Human protein_coding chr2:191233943 chr2:191233942 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_20123 0 0 0 0 1 INPP1 chr2:191234003 5'GT 191234003 Upstream 62bp 18781 chr10 106121840 106121840 1 + G T COAD 106121841 + 106121821 106121861 41 ACAAAGAGCAGAAGGCCAAGGAGACGATTCTTGCTCTGAAA ACAAAGAGCAGAAGGCCAATGAGACGATTCTTGCTCTGAAA < 41bp 0.424910627053604 0.757129203204086 NA NA prediction 0.514258406408171 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121841 chr10:106121840 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_20124 0 0 0 0 2 CFAP58 chr10:106121781 3'AG 106121781 Downstream 60bp 18782 chr10 106121840 106121840 1 + G T COAD 106121841 + 106121821 106121861 41 ACAAAGAGCAGAAGGCCAAGGAGACGATTCTTGCTCTGAAA ACAAAGAGCAGAAGGCCAATGAGACGATTCTTGCTCTGAAA < 41bp 0.424910627053604 0.757129203204086 NA NA prediction 0.514258406408171 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121841 chr10:106121840 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_20124 0 0 0 0 2 CFAP58 chr10:106121929 5'GT 106121929 Upstream 90bp 18783 chr9 108151319 108151319 1 + G T THCA 108151320 + 108151300 108151340 41 ACTTTGTTTTCTAGGCTTCGGGAGCAAGTTCTGCTTGAACC ACTTTGTTTTCTAGGCTTCTGGAGCAAGTTCTGCTTGAACC < 41bp 0.557487354621641 0.814606539554519 NA NA prediction 0.514238369865756 Functional Gain - SLC44A1 ENSG00000070214 CDS Human protein_coding chr9:108151320 chr9:108151319 synonymous SNV . 0 20 hm7G_associated_SNPs_20125 0 0 1 0 1 SLC44A1 chr9:108151314 3'AG 108151314 Downstream 6bp 18784 chrX 23945383 23945383 1 + G T COAD 23945384 + 23945364 23945404 41 TGATGCTTGCAAACTAATGGGGGAAAGGAAATTTCACCGTA TGATGCTTGCAAACTAATGTGGGAAAGGAAATTTCACCGTA < 41bp 0.598024215184006 0.855141599067319 NA NA prediction 0.514234767766626 Functional Gain - CXorf58 ENSG00000165182 CDS Human protein_coding chrX:23945384 chrX:23945383 nonsynonymous SNV 0.660 4 20 hm7G_associated_SNPs_20126 0 0 0 0 1 CXorf58 chrX:23945356 3'AG 23945356 Downstream 28bp 18785 chr1 198703553 198703553 1 + G T UCEC 198703554 + 198703534 198703574 41 CGATGTGAAGAAGGAAACAGGGTAAGAACCAAGAAGATTCA CGATGTGAAGAAGGAAACATGGTAAGAACCAAGAAGATTCA < 41bp 0.592414105156521 0.849522748214338 NA NA prediction 0.514217286115634 Functional Gain - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198703554 chr1:198703553 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20127 0 0 0 0 1 PTPRC chr1:198703457 3'AG 198703457 Downstream 97bp 18786 chr3 9982832 9982832 1 + G T PAAD 9982833 + 9982813 9982853 41 CCCGATGCTCAGGACCTGAGGAATCAAACTGTTTGCAATGC CCCGATGCTCAGGACCTGATGAATCAAACTGTTTGCAATGC < 41bp 0.616828536229587 0.873910646141636 NA NA prediction 0.514164219824098 Functional Gain - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9982833 chr3:9982832 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_20129 0 0 1 0 2 CRELD1 chr3:9982795 3'AG 9982795 Downstream 38bp 18787 chr3 9982832 9982832 1 + G T PAAD 9982833 + 9982813 9982853 41 CCCGATGCTCAGGACCTGAGGAATCAAACTGTTTGCAATGC CCCGATGCTCAGGACCTGATGAATCAAACTGTTTGCAATGC < 41bp 0.616828536229587 0.873910646141636 NA NA prediction 0.514164219824098 Functional Gain - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9982833 chr3:9982832 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_20129 0 0 1 0 2 CRELD1 chr3:9982890 5'GT 9982890 Upstream 59bp 18788 chr4 48494818 48494818 1 + G T CHOL 48494819 + 48494799 48494839 41 ATGGCTATTACCACTGCAAGGACTGCAACATCCGCTGGGAG ATGGCTATTACCACTGCAATGACTGCAACATCCGCTGGGAG < 41bp 0.609695732376034 0.866773922108875 NA NA prediction 0.514156379465683 Functional Gain - ZAR1 ENSG00000182223 CDS Human protein_coding chr4:48494819 chr4:48494818 nonsynonymous SNV 0.771 4 20 hm7G_associated_SNPs_20130 0 0 0 0 2 ZAR1 chr4:48494783 3'AG 48494783 Downstream 36bp 18789 chr4 48494818 48494818 1 + G T CHOL 48494819 + 48494799 48494839 41 ATGGCTATTACCACTGCAAGGACTGCAACATCCGCTGGGAG ATGGCTATTACCACTGCAATGACTGCAACATCCGCTGGGAG < 41bp 0.609695732376034 0.866773922108875 NA NA prediction 0.514156379465683 Functional Gain - ZAR1 ENSG00000182223 CDS Human protein_coding chr4:48494819 chr4:48494818 nonsynonymous SNV 0.771 4 20 hm7G_associated_SNPs_20130 0 0 0 0 2 ZAR1 chr4:48494875 5'GT 48494875 Upstream 58bp 18790 chr7 158716359 158716359 1 + G T UCEC 158716360 + 158716340 158716380 41 GATTTGAGAGAAGACTCAAGGCTGCATTACTCTGTGACGCT GATTTGAGAGAAGACTCAATGCTGCATTACTCTGTGACGCT < 41bp 0.415567617510248 0.757076773086649 NA NA prediction 0.514153546173299 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158716360 chr7:158716359 nonsynonymous SNV 0.346 3 20 hm7G_associated_SNPs_20131 0 0 1 0 2 WDR60 chr7:158716262 3'AG 158716262 Downstream 98bp 18791 chr7 158716359 158716359 1 + G T UCEC 158716360 + 158716340 158716380 41 GATTTGAGAGAAGACTCAAGGCTGCATTACTCTGTGACGCT GATTTGAGAGAAGACTCAATGCTGCATTACTCTGTGACGCT < 41bp 0.415567617510248 0.757076773086649 NA NA prediction 0.514153546173299 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158716360 chr7:158716359 nonsynonymous SNV 0.346 3 20 hm7G_associated_SNPs_20131 0 0 1 0 2 WDR60 chr7:158716424 5'GT 158716424 Upstream 66bp 18792 chr18 76754853 76754853 1 + G T LUAD 76754854 + 76754834 76754874 41 GAGGCGCCCCTGGCCGCGCGGGCATCAAGGAGGAGGCGCCC GAGGCGCCCCTGGCCGCGCTGGCATCAAGGAGGAGGCGCCC < 41bp 0.613248737407114 0.870324565671494 NA NA prediction 0.514151656528761 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76754854 chr18:76754853 synonymous SNV . 0 20 hm7G_associated_SNPs_20132 0 0 0 0 1 SALL3 chr18:76754905 5'GT 76754905 Upstream 53bp 18793 chr1 193205435 193205435 1 + G T UCEC 193205436 + 193205416 193205456 41 TCCTGCATGGCAGTTCAAAGGTTGGCCATGGCTTTTGCCTG TCCTGCATGGCAGTTCAAATGTTGGCCATGGCTTTTGCCTG < 41bp 0.448775298974202 0.757074668492845 NA NA prediction 0.514149336985691 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205436 chr1:193205435 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20133 0 0 1 0 2 CDC73 chr1:193205386 3'AG 193205386 Downstream 50bp 18794 chr1 193205435 193205435 1 + G T UCEC 193205436 + 193205416 193205456 41 TCCTGCATGGCAGTTCAAAGGTTGGCCATGGCTTTTGCCTG TCCTGCATGGCAGTTCAAATGTTGGCCATGGCTTTTGCCTG < 41bp 0.448775298974202 0.757074668492845 NA NA prediction 0.514149336985691 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193205436 chr1:193205435 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20133 0 0 1 0 2 CDC73 chr1:193205486 5'GT 193205486 Upstream 52bp 18795 chr12 58176927 58176927 1 + G T UCEC 58176928 + 58176908 58176948 41 CGTCAGTCGCCCCAGCCAAGGCACACATTTTATGCTGGGCC CGTCAGTCGCCCCAGCCAATGCACACATTTTATGCTGGGCC < 41bp 0.436567965503365 0.757062846457807 NA NA prediction 0.514125692915614 Functional Gain - TSFM ENSG00000123297;ENSG00000257921 CDS Human other chr12:58176928 chr12:58176927 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_20135 0 0 1 0 1 TSFM chr12:58176893 3'AG 58176893 Downstream 35bp 18796 chr18 61231236 61231236 1 + G T PAAD 61231237 + 61231217 61231257 41 TCAAGGAACTCTTCAGCAAGGACGCTATTAATGCTGAGACT TCAAGGAACTCTTCAGCAATGACGCTATTAATGCTGAGACT < 41bp 0.597655536973099 0.854713099882236 NA NA prediction 0.514115125818274 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61231237 chr18:61231236 nonsynonymous SNV 0.671 2 20 hm7G_associated_SNPs_20138 0 0 0 0 1 SERPINB12 chr18:61231211 3'AG 61231211 Downstream 26bp 18797 chr1 117945001 117945001 1 + G T LGG 117945002 + 117944982 117945022 41 CCCTATTCCCAACCTTGTAGGAATACGTGGTGGAGACCCAG CCCTATTCCCAACCTTGTATGAATACGTGGTGGAGACCCAG < 41bp 0.604998661499153 0.862033936414873 NA NA prediction 0.514070549831442 Functional Gain - MAN1A2 ENSG00000198162 CDS Human protein_coding chr1:117945002 chr1:117945001 stopgain 0.657 1 20 hm7G_associated_SNPs_20141 0 0 1 0 1 MAN1A2 chr1:117945063 5'GT 117945063 Upstream 63bp 18798 chr12 49948284 49948284 1 + G T LUAD 49948285 + 49948265 49948305 41 TGCCCCGCGCTTCAGTCGTGGCCTCCGAGGGGAGCTCAGCT TGCCCCGCGCTTCAGTCGTTGCCTCCGAGGGGAGCTCAGCT < 41bp 0.618010042444649 0.875036736065106 NA NA prediction 0.514053387240915 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49948285 chr12:49948284 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_20143 0 0 0 0 1 KCNH3 chr12:49948337 5'GT 49948337 Upstream 54bp 18799 chr11 62530435 62530435 1 + G T UCEC 62530436 + 62530416 62530456 41 TTTATCCAGTTAAGTACAAGGCCATTGTTTTCCGGCCATTT TTTATCCAGTTAAGTACAATGCCATTGTTTTCCGGCCATTT < 41bp 0.61490800905123 0.871926591725286 NA NA prediction 0.514037165348112 Functional Gain - POLR2G ENSG00000168002 CDS Human other chr11:62530436 chr11:62530435 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_20145 0 0 1 0 2 POLR2G chr11:62530339 3'AG 62530339 Downstream 97bp 18800 chr11 62530435 62530435 1 + G T UCEC 62530436 + 62530416 62530456 41 TTTATCCAGTTAAGTACAAGGCCATTGTTTTCCGGCCATTT TTTATCCAGTTAAGTACAATGCCATTGTTTTCCGGCCATTT < 41bp 0.61490800905123 0.871926591725286 NA NA prediction 0.514037165348112 Functional Gain - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62530436 chr11:62530435 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_20145 0 0 1 0 2 POLR2G chr11:62530498 5'GT 62530498 Upstream 64bp 18801 chr9 104071658 104071658 1 + G T STAD 104071659 + 104071639 104071679 41 AATGGGAACATTTGTACTGGGGACCTGGAAGTGATAGAAAA AATGGGAACATTTGTACTGTGGACCTGGAAGTGATAGAAAA < 41bp 0.606248340584856 0.863261968951729 NA NA prediction 0.514027256733746 Functional Gain - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104071659 chr9:104071658 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_20146 0 0 0 0 1 PLPPR1 chr9:104071743 5'GT 104071743 Upstream 86bp 18802 chr2 234255459 234255459 1 + G T UCEC 234255460 + 234255440 234255480 41 TGTTTTATTTTAGTTATCAGGATGCAAATTTAGTTTTTGAG TGTTTTATTTTAGTTATCATGATGCAAATTTAGTTTTTGAG < 41bp 0.564716159843164 0.821686888754115 NA NA prediction 0.513941457821901 Functional Gain - SAG ENSG00000130561 CDS Human protein_coding chr2:234255460 chr2:234255459 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_20148 0 0 0 0 1 SAG chr2:234255453 3'AG 234255453 Downstream 7bp 18803 chr6 31583922 31583922 1 + G T COAD 31583923 + 31583903 31583943 41 TAATGGAAATGGCGATATTGGTGAGAAACGGGTGATTTGCG TAATGGAAATGGCGATATTTGTGAGAAACGGGTGATTTGCG < 41bp 0.510348759247441 0.76730451574981 NA NA prediction 0.513911513004738 Functional Gain - AIF1 ENSG00000204472 CDS Human protein_coding chr6:31583923 chr6:31583922 nonsynonymous SNV 0.964 4 20 hm7G_associated_SNPs_20150 0 0 0 0 2 AIF1 chr6:31583881 3'AG 31583881 Downstream 42bp 18804 chr6 31583922 31583922 1 + G T COAD 31583923 + 31583903 31583943 41 TAATGGAAATGGCGATATTGGTGAGAAACGGGTGATTTGCG TAATGGAAATGGCGATATTTGTGAGAAACGGGTGATTTGCG < 41bp 0.510348759247441 0.76730451574981 NA NA prediction 0.513911513004738 Functional Gain - AIF1 ENSG00000204472 CDS Human protein_coding chr6:31583923 chr6:31583922 nonsynonymous SNV 0.964 4 20 hm7G_associated_SNPs_20150 0 0 0 0 2 AIF1 chr6:31583922 5'GT 31583922 Upstream 1bp 18805 chr17 7399280 7399280 1 + G T UCEC 7399281 + 7399261 7399301 41 AGCGAATGTCTGTGACGGAGGGTGGCATCAAATACCCAGAG AGCGAATGTCTGTGACGGATGGTGGCATCAAATACCCAGAG < 41bp 0.421010968952719 0.756948375249686 NA NA prediction 0.513896750499372 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7399281 chr17:7399280 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20151 0 0 1 0 1 POLR2A chr17:7399260 3'AG 7399260 Downstream 21bp 18806 chr16 55806302 55806302 1 + G T LUSC 55806303 + 55806283 55806323 41 CAGGGGATGAACACAGCCCGGGGAACTGGGGTCACCTGGAC CAGGGGATGAACACAGCCCTGGGAACTGGGGTCACCTGGAC < 41bp 0.595037959471528 0.851984697508777 NA NA prediction 0.513893476074499 Functional Gain - CES1P1 ENSG00000228695 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:55806303 chr16:55806302 . . 0 20 hm7G_associated_SNPs_20152 0 0 0 0 1 CES1P1 chr16:55806281 3'AG 55806281 Downstream 22bp 18807 chr7 127238490 127238490 1 + G T LUSC 127238491 + 127238471 127238511 41 TTCTGACATTCTTTCCAGAGGCGCCACAGGGCAGTAATGGC TTCTGACATTCTTTCCAGATGCGCCACAGGGCAGTAATGGC < 41bp 0.609853087798784 0.866798715850728 NA NA prediction 0.513891256103889 Functional Gain - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127238491 chr7:127238490 nonsynonymous SNV 0.748 1 20 hm7G_associated_SNPs_20153 0 0 0 0 1 FSCN3 chr7:127238489 3'AG 127238489 Downstream 2bp 18808 chr7 134261740 134261740 1 + G T UCEC 134261741 + 134261721 134261761 41 ATCCGTTTCCATATCCAGAGGAATGTGACAGTGATCCCCAA ATCCGTTTCCATATCCAGATGAATGTGACAGTGATCCCCAA < 41bp 0.447329491950994 0.756940260028245 NA NA prediction 0.513880520056489 Functional Gain - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134261741 chr7:134261740 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_20154 0 0 0 0 2 AKR1B15 chr7:134261715 3'AG 134261715 Downstream 26bp 18809 chr7 134261740 134261740 1 + G T UCEC 134261741 + 134261721 134261761 41 ATCCGTTTCCATATCCAGAGGAATGTGACAGTGATCCCCAA ATCCGTTTCCATATCCAGATGAATGTGACAGTGATCCCCAA < 41bp 0.447329491950994 0.756940260028245 NA NA prediction 0.513880520056489 Functional Gain - AKR1B15 ENSG00000227471 CDS Human protein_coding chr7:134261741 chr7:134261740 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_20154 0 0 0 0 2 AKR1B15 chr7:134261798 5'GT 134261798 Upstream 59bp 18810 chr3 13659604 13659604 1 + G T COAD 13659605 + 13659585 13659625 41 CAGAGATGGCGGGCCGAGAGGCCCTGTCACTGGGCACAGAG CAGAGATGGCGGGCCGAGATGCCCTGTCACTGGGCACAGAG < 41bp 0.403211389472833 0.756923796342835 NA NA prediction 0.51384759268567 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13659605 chr3:13659604 nonsynonymous SNV 0.842 3 20 hm7G_associated_SNPs_20159 0 0 0 0 1 FBLN2 chr3:13659576 3'AG 13659576 Downstream 29bp 18811 chr16 29982737 29982737 1 + G T STAD 29982738 + 29982718 29982758 41 CCCCTCCCTAGGAGGAGCTGGCTCTGTGTGGCTCCAGGCTG CCCCTCCCTAGGAGGAGCTTGCTCTGTGTGGCTCCAGGCTG < 41bp 0.623274169855264 0.880191485413667 NA NA prediction 0.513834631116806 Functional Gain - TMEM219 ENSG00000149932 CDS Human protein_coding chr16:29982738 chr16:29982737 synonymous SNV . 0 20 hm7G_associated_SNPs_20160 0 0 1 0 1 TMEM219 chr16:29982729 3'AG 29982729 Downstream 9bp 18812 chr2 235961378 235961378 1 + G T THYM 235961379 + 235961359 235961399 41 CCCCACCGGGACAGGAACGGGGTTGTGGACAGCGAGGTGAG CCCCACCGGGACAGGAACGTGGTTGTGGACAGCGAGGTGAG < 41bp 0.617924803339424 0.874840239474833 NA NA prediction 0.513830872270819 Functional Gain - SH3BP4 ENSG00000130147 CDS Human protein_coding chr2:235961379 chr2:235961378 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_20161 0 0 1 0 1 SH3BP4 chr2:235961394 5'GT 235961394 Upstream 17bp 18813 chr17 8157326 8157326 1 + G T UCEC 8157327 + 8157307 8157347 41 GCCCCTGGACACACTCGGAGGAAACTGCAAGGGAAACTGCC GCCCCTGGACACACTCGGATGAAACTGCAAGGGAAACTGCC < 41bp 0.615214558068462 0.872127092120842 NA NA prediction 0.51382506810476 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8157327 chr17:8157326 nonsynonymous SNV 0.148 3 20 hm7G_associated_SNPs_20162 0 0 1 0 1 PFAS chr17:8157397 5'GT 8157397 Upstream 72bp 18814 chr13 48951141 48951141 1 + G T HNSC 48951142 + 48951122 48951162 41 GAAATTTGCTAAAGCTGTGGGACAGGGTTGTGTCGAAATTG GAAATTTGCTAAAGCTGTGTGACAGGGTTGTGTCGAAATTG < 41bp 0.441822781832466 0.756911545136128 NA NA prediction 0.513823090272255 Functional Gain - RB1 ENSG00000139687 CDS Human protein_coding chr13:48951142 chr13:48951141 stopgain 0.999 1 20 hm7G_associated_SNPs_20163 0 0 1 0 1 RB1 chr13:48951054 3'AG 48951054 Downstream 88bp 18815 chr7 31123774 31123774 1 + G T LUAD 31123775 + 31123755 31123795 41 GACATGGGAGTGGTGAGCCGGAACTGCACGGAGGATGGCTG GACATGGGAGTGGTGAGCCTGAACTGCACGGAGGATGGCTG < 41bp 0.621101320736679 0.878003433891291 NA NA prediction 0.513804226309225 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31123775 chr7:31123774 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20164 0 0 0 0 2 ADCYAP1R1 chr7:31123756 3'AG 31123756 Downstream 19bp 18816 chr7 31123774 31123774 1 + G T LUAD 31123775 + 31123755 31123795 41 GACATGGGAGTGGTGAGCCGGAACTGCACGGAGGATGGCTG GACATGGGAGTGGTGAGCCTGAACTGCACGGAGGATGGCTG < 41bp 0.621101320736679 0.878003433891291 NA NA prediction 0.513804226309225 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31123775 chr7:31123774 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20164 0 0 0 0 2 ADCYAP1R1 chr7:31123865 5'GT 31123865 Upstream 92bp 18817 chr11 134015861 134015861 1 + G T LUSC 134015862 + 134015842 134015882 41 TGTTCACTGCTGTTCACAAGGACGACTCTGGGCAGTACTAC TGTTCACTGCTGTTCACAATGACGACTCTGGGCAGTACTAC < 41bp 0.617012951271822 0.873913884068838 NA NA prediction 0.513801865594031 Functional Gain - JAM3 ENSG00000166086 CDS Human protein_coding chr11:134015862 chr11:134015861 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20165 0 0 1 0 2 JAM3 chr11:134015841 3'AG 134015841 Downstream 21bp 18818 chr11 134015861 134015861 1 + G T LUSC 134015862 + 134015842 134015882 41 TGTTCACTGCTGTTCACAAGGACGACTCTGGGCAGTACTAC TGTTCACTGCTGTTCACAATGACGACTCTGGGCAGTACTAC < 41bp 0.617012951271822 0.873913884068838 NA NA prediction 0.513801865594031 Functional Gain - JAM3 ENSG00000166086 CDS Human protein_coding chr11:134015862 chr11:134015861 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20165 0 0 1 0 2 JAM3 chr11:134015940 5'GT 134015940 Upstream 80bp 18819 chr7 123296242 123296242 1 + G T UCEC 123296243 + 123296223 123296263 41 TGATGGCCTATTGGGAAAAGGAGTCCCAAAAACTCTTGGAG TGATGGCCTATTGGGAAAATGAGTCCCAAAAACTCTTGGAG < 41bp 0.444780676197619 0.756883731464234 NA NA prediction 0.513767462928469 Functional Gain - LMOD2 ENSG00000170807 CDS Human protein_coding chr7:123296243 chr7:123296242 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_20167 0 0 0 0 1 LMOD2 chr7:123296290 5'GT 123296290 Upstream 49bp 18820 chr4 156618040 156618040 1 + G T STAD 156618041 + 156618021 156618061 41 TGTTCTGCACGAAGCTCAAGGATCTCAAGATCACAGGAGAG TGTTCTGCACGAAGCTCAATGATCTCAAGATCACAGGAGAG < 41bp 0.431500808441405 0.756873110850685 NA NA prediction 0.51374622170137 Functional Gain - GUCY1A3 ENSG00000164116 CDS Human protein_coding chr4:156618041 chr4:156618040 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20168 0 0 0 0 1 GUCY1A3 chr4:156617958 3'AG 156617958 Downstream 83bp 18821 chr3 183908820 183908820 1 + G T COAD 183908821 + 183908801 183908841 41 CTGTGGACAAGGAATCAGAGGTCGTAATGAAGTAAGTGCTG CTGTGGACAAGGAATCAGATGTCGTAATGAAGTAAGTGCTG < 41bp 0.424987100295437 0.756866095043333 NA NA prediction 0.513732190086666 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183908821 chr3:183908820 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_20169 0 0 1 0 2 ABCF3 chr3:183908787 3'AG 183908787 Downstream 34bp 18822 chr3 183908820 183908820 1 + G T COAD 183908821 + 183908801 183908841 41 CTGTGGACAAGGAATCAGAGGTCGTAATGAAGTAAGTGCTG CTGTGGACAAGGAATCAGATGTCGTAATGAAGTAAGTGCTG < 41bp 0.424987100295437 0.756866095043333 NA NA prediction 0.513732190086666 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183908821 chr3:183908820 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_20169 0 0 1 0 2 ABCF3 chr3:183908831 5'GT 183908831 Upstream 12bp 18823 chr1 17550894 17550894 1 + G T COAD 17550895 + 17550875 17550915 41 GGTTGACACAGGCCGCACAGGCAAGGTGAAGAGGAGCCAAG GGTTGACACAGGCCGCACATGCAAGGTGAAGAGGAGCCAAG < 41bp 0.619810639314054 0.876656496491436 NA NA prediction 0.513691714354764 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17550895 chr1:17550894 nonsynonymous SNV 0.879 4 20 hm7G_associated_SNPs_20171 0 0 0 0 2 PADI1 chr1:17550862 3'AG 17550862 Downstream 33bp 18824 chr1 17550894 17550894 1 + G T COAD 17550895 + 17550875 17550915 41 GGTTGACACAGGCCGCACAGGCAAGGTGAAGAGGAGCCAAG GGTTGACACAGGCCGCACATGCAAGGTGAAGAGGAGCCAAG < 41bp 0.619810639314054 0.876656496491436 NA NA prediction 0.513691714354764 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17550895 chr1:17550894 nonsynonymous SNV 0.879 4 20 hm7G_associated_SNPs_20171 0 0 0 0 2 PADI1 chr1:17550923 5'GT 17550923 Upstream 30bp 18825 chr10 106974319 106974319 1 + G T LUAD 106974320 + 106974300 106974340 41 GTGGTGACGACCGATGGGCGGCTGGTGGCAGAGCAGGGGCA GTGGTGACGACCGATGGGCTGCTGGTGGCAGAGCAGGGGCA < 41bp 0.60191715070318 0.858755614650578 NA NA prediction 0.513676927894796 Functional Gain - SORCS3 ENSG00000156395 CDS Human protein_coding chr10:106974320 chr10:106974319 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_20172 0 0 0 1 1 SORCS3 chr10:106974371 5'GT 106974371 Upstream 53bp 18826 chr3 15469367 15469367 1 + G T rs77636884 15469368 + 15469348 15469388 41 GCTTCGAGAAGCGGCCGCGGGCCTCCTTCCACACTATTCGT GCTTCGAGAAGCGGCCGCGTGCCTCCTTCCACACTATTCGT < 41bp 0.431284029198954 0.756835121544981 NA NA prediction 0.513670243089962 Functional Gain - EAF1 ENSG00000144597 CDS Human protein_coding chr3:15469368 chr3:15469367 synonymous SNV . 0 20 hm7G_associated_SNPs_20173 0 0 1 0 1 EAF1 chr3:15469389 5'GT 15469389 Upstream 23bp 18827 chr8 118543009 118543009 1 + G T LUSC 118543010 + 118542990 118543030 41 GCTCAAAGAATGATGATCGGGCTGGCCCACCTCGTTTTGCT GCTCAAAGAATGATGATCGTGCTGGCCCACCTCGTTTTGCT < 41bp 0.607835929059768 0.864665735050693 NA NA prediction 0.513659611981851 Functional Gain - MED30 ENSG00000164758 CDS Human protein_coding chr8:118543010 chr8:118543009 synonymous SNV . 0 20 hm7G_associated_SNPs_20175 0 0 1 0 2 MED30 chr8:118542962 3'AG 118542962 Downstream 48bp 18828 chr8 118543009 118543009 1 + G T LUSC 118543010 + 118542990 118543030 41 GCTCAAAGAATGATGATCGGGCTGGCCCACCTCGTTTTGCT GCTCAAAGAATGATGATCGTGCTGGCCCACCTCGTTTTGCT < 41bp 0.607835929059768 0.864665735050693 NA NA prediction 0.513659611981851 Functional Gain - MED30 ENSG00000164758 CDS Human protein_coding chr8:118543010 chr8:118543009 synonymous SNV . 0 20 hm7G_associated_SNPs_20175 0 0 1 0 2 MED30 chr8:118543066 5'GT 118543066 Upstream 58bp 18829 chr4 71396973 71396973 1 + G T UCEC 71396974 + 71396954 71396994 41 ACCCCTGCAGGCATCCAAAGGAGCACACATGCCATCGAGGA ACCCCTGCAGGCATCCAAATGAGCACACATGCCATCGAGGA < 41bp 0.598721441836234 0.855547131564288 NA NA prediction 0.513651379456107 Functional Gain - AMTN ENSG00000187689 CDS Human protein_coding chr4:71396974 chr4:71396973 nonsynonymous SNV 0.020 4 20 hm7G_associated_SNPs_20177 0 0 0 0 1 AMTN chr4:71397017 5'GT 71397017 Upstream 45bp 18830 chr12 112926873 112926873 1 + G T GBM 112926874 + 112926854 112926894 41 AAAACCATCCAGATGGTGCGGTCTCAGAGGTCAGGGATGGT AAAACCATCCAGATGGTGCTGTCTCAGAGGTCAGGGATGGT < 41bp 0.601562361566721 0.85837994147456 NA NA prediction 0.513635159815679 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926874 chr12:112926873 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_20180 4 0 1 0 1 PTPN11 chr12:112926828 3'AG 112926828 Downstream 46bp 18831 chr2 44079547 44079547 1 + G T OV 44079548 + 44079528 44079568 41 GTGCGCTGACACCCGCGTGGGCAACATGTACGTGCGGGGGT GTGCGCTGACACCCGCGTGTGCAACATGTACGTGCGGGGGT < 41bp 0.623133144280513 0.879928151022565 NA NA prediction 0.513590013484104 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079548 chr2:44079547 nonsynonymous SNV 0.632 5 20 hm7G_associated_SNPs_20182 0 0 1 0 2 ABCG8 chr2:44079493 3'AG 44079493 Downstream 55bp 18832 chr2 44079547 44079547 1 + G T OV 44079548 + 44079528 44079568 41 GTGCGCTGACACCCGCGTGGGCAACATGTACGTGCGGGGGT GTGCGCTGACACCCGCGTGTGCAACATGTACGTGCGGGGGT < 41bp 0.623133144280513 0.879928151022565 NA NA prediction 0.513590013484104 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44079548 chr2:44079547 nonsynonymous SNV 0.632 5 20 hm7G_associated_SNPs_20182 0 0 1 0 2 ABCG8 chr2:44079625 5'GT 44079625 Upstream 79bp 18833 chr3 142496591 142496591 1 + G T OV 142496592 + 142496572 142496612 41 TAAAAGAACTAAGTCTTGTGGAGGTGGAATTCAGGTGGGAA TAAAAGAACTAAGTCTTGTTGAGGTGGAATTCAGGTGGGAA < 41bp 0.584522763549303 0.841317294463477 NA NA prediction 0.513589061828348 Functional Gain - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142496592 chr3:142496591 synonymous SNV . 0 20 hm7G_associated_SNPs_20183 0 0 1 0 1 TRPC1 chr3:142496605 5'GT 142496605 Upstream 15bp 18834 chr1 16352637 16352637 1 + G T THCA 16352638 + 16352618 16352658 41 AGCTGAAGACCATGTTGGCGGGTGTGATCTTGGAGGACTAC AGCTGAAGACCATGTTGGCTGGTGTGATCTTGGAGGACTAC < 41bp 0.620800756343195 0.877589267134245 NA NA prediction 0.513577021582099 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16352638 chr1:16352637 synonymous SNV . 0 20 hm7G_associated_SNPs_20184 0 0 0 0 1 CLCNKA chr1:16352603 3'AG 16352603 Downstream 35bp 18835 chr7 150732788 150732788 1 + G T COAD 150732789 + 150732769 150732809 41 GGGAGTGGGCACCCTGATGGGCTCAGGCCTCCGAAAATTGT GGGAGTGGGCACCCTGATGTGCTCAGGCCTCCGAAAATTGT < 41bp 0.413376743272456 0.756784976671898 NA NA prediction 0.513569953343796 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150732789 chr7:150732788 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20185 0 0 1 0 1 ABCB8 chr7:150732829 5'GT 150732829 Upstream 42bp 18836 chr18 28913597 28913597 1 + G T COAD 28913598 + 28913578 28913618 41 AAGAGGCTCTGACCGAGATGGCGGGGCAGATGGCATGTCAG AAGAGGCTCTGACCGAGATTGCGGGGCAGATGGCATGTCAG < 41bp 0.613824471207912 0.870544288940464 NA NA prediction 0.513439635465104 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913598 chr18:28913597 nonsynonymous SNV 0.906 4 20 hm7G_associated_SNPs_20190 0 0 0 0 2 DSG1 chr18:28913552 3'AG 28913552 Downstream 46bp 18837 chr18 28913597 28913597 1 + G T COAD 28913598 + 28913578 28913618 41 AAGAGGCTCTGACCGAGATGGCGGGGCAGATGGCATGTCAG AAGAGGCTCTGACCGAGATTGCGGGGCAGATGGCATGTCAG < 41bp 0.613824471207912 0.870544288940464 NA NA prediction 0.513439635465104 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913598 chr18:28913597 nonsynonymous SNV 0.906 4 20 hm7G_associated_SNPs_20190 0 0 0 0 2 DSG1 chr18:28913686 5'GT 28913686 Upstream 90bp 18838 chr1 217822288 217822288 1 + G T UCEC 217822289 + 217822269 217822309 41 AATCCAAAGCTGGTTTCGAGGATGTCAAGTTCGGGCATATA AATCCAAAGCTGGTTTCGATGATGTCAAGTTCGGGCATATA < 41bp 0.595493893482366 0.852212581092924 NA NA prediction 0.513437375221116 Functional Gain - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217822289 chr1:217822288 stopgain 1.000 1 20 hm7G_associated_SNPs_20191 0 0 0 0 1 SPATA17 chr1:217822313 5'GT 217822313 Upstream 26bp 18839 chr1 179310222 179310222 1 + G T THCA 179310223 + 179310203 179310243 41 AAATTTCCTACCGTTGTTTGGACCTGGTGGATCATGTTCCT AAATTTCCTACCGTTGTTTTGACCTGGTGGATCATGTTCCT < 41bp 0.429292325359282 0.756714819163225 NA NA prediction 0.513429638326451 Functional Gain - SOAT1 ENSG00000057252 CDS Human protein_coding chr1:179310223 chr1:179310222 nonsynonymous SNV 0.976 0 20 hm7G_associated_SNPs_20192 0 0 1 0 1 SOAT1 chr1:179310163 3'AG 179310163 Downstream 60bp 18840 chrX 35938080 35938080 1 + G T UCEC 35938081 + 35938061 35938101 41 TTCCTGGACACGATGGCCGGGAGGGTGTACCGCCTCCCGAT TTCCTGGACACGATGGCCGTGAGGGTGTACCGCCTCCCGAT < 41bp 0.434932661034916 0.756705197174551 NA NA prediction 0.513410394349102 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35938081 chrX:35938080 nonsynonymous SNV 0.042 4 20 hm7G_associated_SNPs_20195 0 0 0 0 1 CFAP47 chrX:35938165 5'GT 35938165 Upstream 86bp 18841 chr9 6498120 6498120 1 + G T GBM 6498121 + 6498101 6498141 41 TGCTCCTTGGACCTCTGAAGGAATAGAACGGTCAAGGAGAT TGCTCCTTGGACCTCTGAATGAATAGAACGGTCAAGGAGAT < 41bp 0.590134893144085 0.846835967656722 NA NA prediction 0.513402149025274 Functional Gain - UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6498121 chr9:6498120 stopgain 1.000 1 20 hm7G_associated_SNPs_20197 0 0 1 0 1 UHRF2 chr9:6498158 5'GT 6498158 Upstream 39bp 18842 chr12 48173989 48173989 1 + G T UCEC 48173990 + 48173970 48174010 41 GCTTCATTTCCTTCAAGTGGGCCTTCCTGCTCAGCCTCTAT GCTTCATTTCCTTCAAGTGTGCCTTCCTGCTCAGCCTCTAT < 41bp 0.432178702445762 0.756688192995554 NA NA prediction 0.513376385991109 Functional Gain - SLC48A1 ENSG00000211584 CDS Human protein_coding chr12:48173990 chr12:48173989 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20200 0 0 1 1 2 SLC48A1 chr12:48173928 3'AG 48173928 Downstream 62bp 18843 chr12 48173989 48173989 1 + G T UCEC 48173990 + 48173970 48174010 41 GCTTCATTTCCTTCAAGTGGGCCTTCCTGCTCAGCCTCTAT GCTTCATTTCCTTCAAGTGTGCCTTCCTGCTCAGCCTCTAT < 41bp 0.432178702445762 0.756688192995554 NA NA prediction 0.513376385991109 Functional Gain - SLC48A1 ENSG00000211584 CDS Human protein_coding chr12:48173990 chr12:48173989 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20200 0 0 1 1 2 SLC48A1 chr12:48174072 5'GT 48174072 Upstream 84bp 18844 chr10 96967145 96967145 1 + G T BRCA 96967146 + 96967126 96967166 41 TCAGATAAGAGCTATGATGGGTGGTTGGATTTCAAGAAGTT TCAGATAAGAGCTATGATGTGTGGTTGGATTTCAAGAAGTT < 41bp 0.442058396145063 0.756684222262473 NA NA prediction 0.513368444524945 Functional Gain - ACSM6 ENSG00000173124 CDS Human protein_coding chr10:96967146 chr10:96967145 nonsynonymous SNV 0.224 3 20 hm7G_associated_SNPs_20201 0 0 0 0 1 ACSM6 chr10:96967172 5'GT 96967172 Upstream 28bp 18845 chr6 131490380 131490380 1 + G T LGG 131490381 + 131490361 131490401 41 ATTTGTGAAGCTGGCAGAAGGAGATCATGTAAACTCACTTT ATTTGTGAAGCTGGCAGAATGAGATCATGTAAACTCACTTT < 41bp 0.441056846861236 0.756659171578462 NA NA prediction 0.513318343156924 Functional Gain - AKAP7 ENSG00000118507 CDS Human protein_coding chr6:131490381 chr6:131490380 stopgain 0.763 1 20 hm7G_associated_SNPs_20204 0 0 1 0 1 AKAP7 chr6:131490413 5'GT 131490413 Upstream 34bp 18846 chr16 20441037 20441037 1 + G T UCEC 20441038 + 20441018 20441058 41 GAGGCACTGTCTGACCGGAGGAGAGGCCCTCAACCCTGACG GAGGCACTGTCTGACCGGATGAGAGGCCCTCAACCCTGACG < 41bp 0.414980587313813 0.756652289311437 NA NA prediction 0.513304578622874 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441038 chr16:20441037 stopgain 0.859 0 20 hm7G_associated_SNPs_20206 0 0 0 0 2 ACSM5 chr16:20441000 3'AG 20441000 Downstream 38bp 18847 chr16 20441037 20441037 1 + G T UCEC 20441038 + 20441018 20441058 41 GAGGCACTGTCTGACCGGAGGAGAGGCCCTCAACCCTGACG GAGGCACTGTCTGACCGGATGAGAGGCCCTCAACCCTGACG < 41bp 0.414980587313813 0.756652289311437 NA NA prediction 0.513304578622874 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20441038 chr16:20441037 stopgain 0.859 0 20 hm7G_associated_SNPs_20206 0 0 0 0 2 ACSM5 chr16:20441123 5'GT 20441123 Upstream 87bp 18848 chr2 118579309 118579309 1 + G T STAD 118579310 + 118579290 118579330 41 GAACTCATTGTTAAGTTAAGGTTCATGCCCAGGAATGGTAA GAACTCATTGTTAAGTTAATGTTCATGCCCAGGAATGGTAA < 41bp 0.567026227815927 0.823670595109906 NA NA prediction 0.513288734587958 Functional Gain - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579310 chr2:118579309 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_20207 0 0 1 0 2 DDX18 chr2:118579226 3'AG 118579226 Downstream 84bp 18849 chr2 118579309 118579309 1 + G T STAD 118579310 + 118579290 118579330 41 GAACTCATTGTTAAGTTAAGGTTCATGCCCAGGAATGGTAA GAACTCATTGTTAAGTTAATGTTCATGCCCAGGAATGGTAA < 41bp 0.567026227815927 0.823670595109906 NA NA prediction 0.513288734587958 Functional Gain - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579310 chr2:118579309 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_20207 0 0 1 0 2 DDX18 chr2:118579326 5'GT 118579326 Upstream 18bp 18850 chr10 26558080 26558080 1 + G T UCEC 26558081 + 26558061 26558101 41 CCATCTGATCTTGAAAGAAGGATTCTTGAAGCCAAACAGAA CCATCTGATCTTGAAAGAATGATTCTTGAAGCCAAACAGAA < 41bp 0.603039059599458 0.859679806178363 NA NA prediction 0.51328149315781 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26558081 chr10:26558080 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_20208 0 0 0 0 2 GAD2 chr10:26558048 3'AG 26558048 Downstream 33bp 18851 chr10 26558080 26558080 1 + G T UCEC 26558081 + 26558061 26558101 41 CCATCTGATCTTGAAAGAAGGATTCTTGAAGCCAAACAGAA CCATCTGATCTTGAAAGAATGATTCTTGAAGCCAAACAGAA < 41bp 0.603039059599458 0.859679806178363 NA NA prediction 0.51328149315781 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26558081 chr10:26558080 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_20208 0 0 0 0 2 GAD2 chr10:26558102 5'GT 26558102 Upstream 23bp 18852 chr22 24121573 24121573 1 + G T LUSC 24121574 + 24121554 24121594 41 AGGTTCGTGCTTTCTGGCGGGCGCTGGGAGAAGACGGACCT AGGTTCGTGCTTTCTGGCGTGCGCTGGGAGAAGACGGACCT < 41bp 0.621833963209243 0.878473571026818 NA NA prediction 0.513279215635149 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24121574 chr22:24121573 nonsynonymous SNV 0.234 3 20 hm7G_associated_SNPs_20209 0 0 0 0 1 MMP11 chr22:24121603 5'GT 24121603 Upstream 31bp 18853 chr3 42576478 42576478 1 + G T UCEC 42576479 + 42576459 42576499 41 GTCTCCAGAAGGCTAGCCAGGTCCACACTCCTGCTGATCCC GTCTCCAGAAGGCTAGCCATGTCCACACTCCTGCTGATCCC < 41bp 0.427849690600153 0.756638366558507 NA NA prediction 0.513276733117014 Functional Gain - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42576479 chr3:42576478 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_20210 0 0 0 0 1 VIPR1 chr3:42576467 3'AG 42576467 Downstream 12bp 18854 chr3 32860341 32860341 1 + G T LUSC 32860342 + 32860322 32860362 41 GGCGCAGCAGCTCGGGCTCGGGCCGCCCTTTCCCGGCCCGC GGCGCAGCAGCTCGGGCTCTGGCCGCCCTTTCCCGGCCCGC < 41bp 0.429195600379936 0.756626437231264 NA NA prediction 0.513252874462528 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32860342 chr3:32860341 nonsynonymous SNV 0.698 2 20 hm7G_associated_SNPs_20211 0 0 0 0 1 TRIM71 chr3:32860424 5'GT 32860424 Upstream 84bp 18855 chr20 62153051 62153051 1 + G T LUAD 62153052 + 62153032 62153072 41 GCTGACCCGGGTCATTGGTGGGCCAGCTTCTTTTTCGGGAA GCTGACCCGGGTCATTGGTTGGCCAGCTTCTTTTTCGGGAA < 41bp 0.604381395833293 0.861004683293309 NA NA prediction 0.513246574920032 Functional Gain - PPDPF ENSG00000125534 CDS Human protein_coding chr20:62153052 chr20:62153051 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_20212 0 0 1 0 1 PPDPF chr20:62153021 3'AG 62153021 Downstream 31bp 18856 chr12 32772677 32772677 1 + G T STAD 32772678 + 32772658 32772698 41 GCCCAAATTCAGCTTGGTAGGCTCTAAATTCACAGTTCGAA GCCCAAATTCAGCTTGGTATGCTCTAAATTCACAGTTCGAA < 41bp 0.429226419159132 0.756617587015603 NA NA prediction 0.513235174031206 Functional Gain - FGD4 ENSG00000139132 CDS Human protein_coding chr12:32772678 chr12:32772677 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_20213 0 0 0 0 1 FGD4 chr12:32772632 3'AG 32772632 Downstream 46bp 18857 chr16 58538152 58538152 1 + G T UCEC 58538153 + 58538133 58538173 41 TGGATGCCCCTGGACAACAGGTGGGGGCGTCGCAGTTTCCT TGGATGCCCCTGGACAACATGTGGGGGCGTCGCAGTTTCCT < 41bp 0.427135543250345 0.756604420056698 NA NA prediction 0.513208840113395 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538153 chr16:58538152 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_20215 0 0 0 0 2 NDRG4 chr16:58538058 3'AG 58538058 Downstream 95bp 18858 chr16 58538152 58538152 1 + G T UCEC 58538153 + 58538133 58538173 41 TGGATGCCCCTGGACAACAGGTGGGGGCGTCGCAGTTTCCT TGGATGCCCCTGGACAACATGTGGGGGCGTCGCAGTTTCCT < 41bp 0.427135543250345 0.756604420056698 NA NA prediction 0.513208840113395 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58538153 chr16:58538152 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_20215 0 0 0 0 2 NDRG4 chr16:58538178 5'GT 58538178 Upstream 27bp 18859 chr6 32410999 32410999 1 + G T UCEC 32411000 + 32410980 32411020 41 TGCTCACAAACAGCCCTGTGGAACTGAGAGAGCCCAACGTC TGCTCACAAACAGCCCTGTTGAACTGAGAGAGCCCAACGTC < 41bp 0.449018936742359 0.756595359722146 NA NA prediction 0.513190719444292 Functional Gain - HLA-DRA ENSG00000204287 CDS Human protein_coding chr6:32411000 chr6:32410999 synonymous SNV . 0 20 hm7G_associated_SNPs_20216 0 0 0 0 1 HLA-DRA chr6:32410962 3'AG 32410962 Downstream 38bp 18860 chr16 31485024 31485024 1 + G T LUSC 31485025 + 31485005 31485045 41 AGGGTCTGGGGAGTCTTCAGGAGCCTCGGGGGACAAGGACC AGGGTCTGGGGAGTCTTCATGAGCCTCGGGGGACAAGGACC < 41bp 0.624049408267409 0.880628425654013 NA NA prediction 0.513158034773209 Functional Gain - TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31485025 chr16:31485024 stopgain 0.175 0 20 hm7G_associated_SNPs_20217 0 0 0 0 2 TGFB1I1 chr16:31485003 3'AG 31485003 Downstream 22bp 18861 chr16 31485024 31485024 1 + G T LUSC 31485025 + 31485005 31485045 41 AGGGTCTGGGGAGTCTTCAGGAGCCTCGGGGGACAAGGACC AGGGTCTGGGGAGTCTTCATGAGCCTCGGGGGACAAGGACC < 41bp 0.624049408267409 0.880628425654013 NA NA prediction 0.513158034773209 Functional Gain - TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31485025 chr16:31485024 stopgain 0.175 0 20 hm7G_associated_SNPs_20217 0 0 0 0 2 TGFB1I1 chr16:31485055 5'GT 31485055 Upstream 32bp 18862 chr11 76825384 76825384 1 + G T UCEC 76825385 + 76825365 76825405 41 AGCCCATCGACCTGACCGAGGGTGACTTTGCCAACGATGAG AGCCCATCGACCTGACCGATGGTGACTTTGCCAACGATGAG < 41bp 0.412825300199022 0.756532710974689 NA NA prediction 0.513065421949378 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76825385 chr11:76825384 nonsynonymous SNV 0.266 3 20 hm7G_associated_SNPs_20221 0 0 0 0 2 CAPN5 chr11:76825288 3'AG 76825288 Downstream 97bp 18863 chr11 76825384 76825384 1 + G T UCEC 76825385 + 76825365 76825405 41 AGCCCATCGACCTGACCGAGGGTGACTTTGCCAACGATGAG AGCCCATCGACCTGACCGATGGTGACTTTGCCAACGATGAG < 41bp 0.412825300199022 0.756532710974689 NA NA prediction 0.513065421949378 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76825385 chr11:76825384 nonsynonymous SNV 0.266 3 20 hm7G_associated_SNPs_20221 0 0 0 0 2 CAPN5 chr11:76825480 5'GT 76825480 Upstream 97bp 18864 chr11 69458005 69458005 1 + G T UCEC 69458006 + 69457986 69458026 41 ACAACTCCATCCGGCCCGAGGAGCTGCTGGTAACCACTGGA ACAACTCCATCCGGCCCGATGAGCTGCTGGTAACCACTGGA < 41bp 0.416444238129922 0.756529386241977 NA NA prediction 0.513058772483953 Functional Gain - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69458006 chr11:69458005 nonsynonymous SNV 0.967 0 20 hm7G_associated_SNPs_20222 0 0 1 0 1 CCND1 chr11:69458014 5'GT 69458014 Upstream 10bp 18865 chr1 44386213 44386213 1 + G T LUAD 44386214 + 44386194 44386234 41 CCTTCAACAATGGCCTCATGGGCCGGGGGGTGAGATATCTG CCTTCAACAATGGCCTCATTGGCCGGGGGGTGAGATATCTG < 41bp 0.468460842125071 0.756506394109571 NA NA prediction 0.513012788219142 Functional Gain - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44386214 chr1:44386213 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20226 0 0 1 0 2 ST3GAL3 chr1:44386166 3'AG 44386166 Downstream 48bp 18866 chr1 44386213 44386213 1 + G T LUAD 44386214 + 44386194 44386234 41 CCTTCAACAATGGCCTCATGGGCCGGGGGGTGAGATATCTG CCTTCAACAATGGCCTCATTGGCCGGGGGGTGAGATATCTG < 41bp 0.468460842125071 0.756506394109571 NA NA prediction 0.513012788219142 Functional Gain - ST3GAL3 ENSG00000126091 CDS Human protein_coding chr1:44386214 chr1:44386213 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20226 0 0 1 0 2 ST3GAL3 chr1:44386222 5'GT 44386222 Upstream 10bp 18867 chr16 332337 332337 1 + G T UCEC 332338 + 332318 332358 41 ACCAGGTGTTTGTCCTGAAGGAAGGTGTTGATTACAGAGTG ACCAGGTGTTTGTCCTGAATGAAGGTGTTGATTACAGAGTG < 41bp 0.58973600958577 0.846228777451249 NA NA prediction 0.512985535730957 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332338 chr16:332337 nonsynonymous SNV 0.959 4 20 hm7G_associated_SNPs_20227 0 0 1 0 2 ARHGDIG chr16:332297 3'AG 332297 Downstream 41bp 18868 chr16 332337 332337 1 + G T UCEC 332338 + 332318 332358 41 ACCAGGTGTTTGTCCTGAAGGAAGGTGTTGATTACAGAGTG ACCAGGTGTTTGTCCTGAATGAAGGTGTTGATTACAGAGTG < 41bp 0.58973600958577 0.846228777451249 NA NA prediction 0.512985535730957 Functional Gain - ARHGDIG ENSG00000242173 CDS Human protein_coding chr16:332338 chr16:332337 nonsynonymous SNV 0.959 4 20 hm7G_associated_SNPs_20227 0 0 1 0 2 ARHGDIG chr16:332373 5'GT 332373 Upstream 37bp 18869 chr6 45405777 45405777 1 + G T HNSC 45405778 + 45405758 45405798 41 GTTACAGTAGATGGACCTCGGGAACCCAGAAGTAAGTACTC GTTACAGTAGATGGACCTCTGGAACCCAGAAGTAAGTACTC < 41bp 0.4325886928358 0.756489936828454 NA NA prediction 0.512979873656908 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45405778 chr6:45405777 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_20229 0 0 0 0 2 RUNX2 chr6:45405684 3'AG 45405684 Downstream 94bp 18870 chr6 45405777 45405777 1 + G T HNSC 45405778 + 45405758 45405798 41 GTTACAGTAGATGGACCTCGGGAACCCAGAAGTAAGTACTC GTTACAGTAGATGGACCTCTGGAACCCAGAAGTAAGTACTC < 41bp 0.4325886928358 0.756489936828454 NA NA prediction 0.512979873656908 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45405778 chr6:45405777 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_20229 0 0 0 0 2 RUNX2 chr6:45405788 5'GT 45405788 Upstream 12bp 18871 chr2 202672342 202672342 1 + G T UCEC 202672343 + 202672323 202672363 41 GTGATTGTTTTCAGGAAGAGGATCTGAGGCAGGGTTTTCAG GTGATTGTTTTCAGGAAGATGATCTGAGGCAGGGTTTTCAG < 41bp 0.597205773200871 0.853685462132935 NA NA prediction 0.512959377864129 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202672343 chr2:202672342 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_20230 0 0 0 0 1 CDK15 chr2:202672366 5'GT 202672366 Upstream 25bp 18872 chr4 52926996 52926996 1 + G T LUSC 52926997 + 52926977 52927017 41 AAGTCACGCCTTTTGCCTTGGCTGGAGGCTTCCTTTACTGC AAGTCACGCCTTTTGCCTTTGCTGGAGGCTTCCTTTACTGC < 41bp 0.424112099376584 0.75647875682468 NA NA prediction 0.512957513649359 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52926997 chr4:52926996 nonsynonymous SNV 0.452 0 20 hm7G_associated_SNPs_20231 0 0 0 0 2 SPATA18 chr4:52926948 3'AG 52926948 Downstream 49bp 18873 chr4 52926996 52926996 1 + G T LUSC 52926997 + 52926977 52927017 41 AAGTCACGCCTTTTGCCTTGGCTGGAGGCTTCCTTTACTGC AAGTCACGCCTTTTGCCTTTGCTGGAGGCTTCCTTTACTGC < 41bp 0.424112099376584 0.75647875682468 NA NA prediction 0.512957513649359 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52926997 chr4:52926996 nonsynonymous SNV 0.452 0 20 hm7G_associated_SNPs_20231 0 0 0 0 2 SPATA18 chr4:52927063 5'GT 52927063 Upstream 68bp 18874 chr17 33501374 33501374 1 + G T UCEC 33501375 + 33501355 33501395 41 TCCTCACTGACCAGACCAAGGAGCTGCTGGCCAGGTGGGGC TCCTCACTGACCAGACCAATGAGCTGCTGGCCAGGTGGGGC < 41bp 0.622072095442929 0.878534812725544 NA NA prediction 0.512925434565229 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33501375 chr17:33501374 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20232 0 0 0 0 1 UNC45B chr17:33501388 5'GT 33501388 Upstream 15bp 18875 chr11 123484349 123484349 1 + G T UCEC 123484350 + 123484330 123484370 41 GATGAGGATGTGGGCCACAGGATCAAACATGTGGCAGGTGT GATGAGGATGTGGGCCACATGATCAAACATGTGGCAGGTGT < 41bp 0.614412673779311 0.870870741907427 NA NA prediction 0.512916136256234 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123484350 chr11:123484349 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20234 0 0 0 0 1 GRAMD1B chr11:123484366 5'GT 123484366 Upstream 18bp 18876 chr13 27259895 27259895 1 + G T LUAD 27259896 + 27259876 27259916 41 AGCCAGTGGGGAATGACGTGGCCACGATCCTGTCCCGGCGC AGCCAGTGGGGAATGACGTTGCCACGATCCTGTCCCGGCGC < 41bp 0.437835555394129 0.75644223918487 NA NA prediction 0.51288447836974 Functional Gain - WASF3 ENSG00000132970 CDS Human protein_coding chr13:27259896 chr13:27259895 synonymous SNV . 0 20 hm7G_associated_SNPs_20235 0 0 0 0 1 WASF3 chr13:27259825 3'AG 27259825 Downstream 71bp 18877 chr8 11606472 11606472 1 + G T LUAD 11606473 + 11606453 11606493 41 CAGAGAGTGTGTCAACTGTGGGGCTATGTCCACCCCGCTCT CAGAGAGTGTGTCAACTGTTGGGCTATGTCCACCCCGCTCT < 41bp 0.409814193272044 0.75641464186885 NA NA prediction 0.5128292837377 Functional Gain - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11606473 chr8:11606472 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20237 0 0 1 0 2 GATA4 chr8:11606425 3'AG 11606425 Downstream 48bp 18878 chr8 11606472 11606472 1 + G T LUAD 11606473 + 11606453 11606493 41 CAGAGAGTGTGTCAACTGTGGGGCTATGTCCACCCCGCTCT CAGAGAGTGTGTCAACTGTTGGGCTATGTCCACCCCGCTCT < 41bp 0.409814193272044 0.75641464186885 NA NA prediction 0.5128292837377 Functional Gain - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11606473 chr8:11606472 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20237 0 0 1 0 2 GATA4 chr8:11606428 3'AG 11606428 Downstream 45bp 18879 chr6 161134090 161134090 1 + G T LUAD 161134091 + 161134071 161134111 41 ATCCAGACAACGATCCGCAGGGGCCCTGGTGCTATACTACT ATCCAGACAACGATCCGCATGGGCCCTGGTGCTATACTACT < 41bp 0.414800271754286 0.756412202361959 NA NA prediction 0.512824404723919 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161134091 chr6:161134090 nonsynonymous SNV 0.074 0 20 hm7G_associated_SNPs_20238 0 0 0 0 2 PLG chr6:161134018 3'AG 161134018 Downstream 73bp 18880 chr6 161134090 161134090 1 + G T LUAD 161134091 + 161134071 161134111 41 ATCCAGACAACGATCCGCAGGGGCCCTGGTGCTATACTACT ATCCAGACAACGATCCGCATGGGCCCTGGTGCTATACTACT < 41bp 0.414800271754286 0.756412202361959 NA NA prediction 0.512824404723919 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161134091 chr6:161134090 nonsynonymous SNV 0.074 0 20 hm7G_associated_SNPs_20238 0 0 0 0 2 PLG chr6:161134157 5'GT 161134157 Upstream 68bp 18881 chrX 38211966 38211966 1 + G T UCEC 38211967 + 38211947 38211987 41 AAGATGCTGTTTAATCTGAGGATCCTGTTAAACAATGCAGC AAGATGCTGTTTAATCTGATGATCCTGTTAAACAATGCAGC < 41bp 0.587452600157406 0.843833196657883 NA NA prediction 0.512761193000954 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38211967 chrX:38211966 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20242 0 0 0 0 1 OTC chrX:38212026 5'GT 38212026 Upstream 61bp 18882 chr1 55139767 55139767 1 + G T LUSC 55139768 + 55139748 55139788 41 GGATCCTGATGAGGAGATTGGCTGTGAGGCTCTGGACGGCA GGATCCTGATGAGGAGATTTGCTGTGAGGCTCTGGACGGCA < 41bp 0.619688677408561 0.876057079335702 NA NA prediction 0.512736803854282 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55139768 chr1:55139767 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_20243 0 0 0 0 3 MROH7-TTC4 chr1:55139673 3'AG 55139673 Downstream 95bp 18883 chr1 55139767 55139767 1 + G T LUSC 55139768 + 55139748 55139788 41 GGATCCTGATGAGGAGATTGGCTGTGAGGCTCTGGACGGCA GGATCCTGATGAGGAGATTTGCTGTGAGGCTCTGGACGGCA < 41bp 0.619688677408561 0.876057079335702 NA NA prediction 0.512736803854282 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55139768 chr1:55139767 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_20243 0 0 0 0 3 MROH7 chr1:55139689 3'AG 55139689 Downstream 79bp 18884 chr1 55139767 55139767 1 + G T LUSC 55139768 + 55139748 55139788 41 GGATCCTGATGAGGAGATTGGCTGTGAGGCTCTGGACGGCA GGATCCTGATGAGGAGATTTGCTGTGAGGCTCTGGACGGCA < 41bp 0.619688677408561 0.876057079335702 NA NA prediction 0.512736803854282 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55139768 chr1:55139767 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_20243 0 0 0 0 3 MROH7 chr1:55139824 5'GT 55139824 Upstream 58bp 18885 chrX 79278708 79278708 1 + G T STAD 79278709 + 79278689 79278729 41 GAAAAGATTCCATGACATCGGGACTGAGATGATCATTACTA GAAAAGATTCCATGACATCTGGACTGAGATGATCATTACTA < 41bp 0.610945902245636 0.867314249062003 NA NA prediction 0.512736693632734 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79278709 chrX:79278708 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_20244 0 0 1 0 1 TBX22 chrX:79278739 5'GT 79278739 Upstream 32bp 18886 chr19 21588630 21588630 1 + G T LUSC 21588631 + 21588611 21588651 41 AAGATCCCTGGAATATGAAGGGACACAGTACGGTAGTCAAA AAGATCCCTGGAATATGAATGGACACAGTACGGTAGTCAAA < 41bp 0.528100258827368 0.784454223913892 NA NA prediction 0.512707930173048 Functional Gain - ZNF493 ENSG00000196268;ENSG00000269237 CDS Human other chr19:21588631 chr19:21588630 nonsynonymous SNV 0.109 2 20 hm7G_associated_SNPs_20245 0 0 1 0 3 ZNF493 chr19:21588560 3'AG 21588560 Downstream 71bp 18887 chr19 21588630 21588630 1 + G T LUSC 21588631 + 21588611 21588651 41 AAGATCCCTGGAATATGAAGGGACACAGTACGGTAGTCAAA AAGATCCCTGGAATATGAATGGACACAGTACGGTAGTCAAA < 41bp 0.528100258827368 0.784454223913892 NA NA prediction 0.512707930173048 Functional Gain - ZNF493 ENSG00000196268;ENSG00000269237 CDS Human other chr19:21588631 chr19:21588630 nonsynonymous SNV 0.109 2 20 hm7G_associated_SNPs_20245 0 0 1 0 3 ZNF493 chr19:21588563 3'AG 21588563 Downstream 68bp 18888 chr19 21588630 21588630 1 + G T LUSC 21588631 + 21588611 21588651 41 AAGATCCCTGGAATATGAAGGGACACAGTACGGTAGTCAAA AAGATCCCTGGAATATGAATGGACACAGTACGGTAGTCAAA < 41bp 0.528100258827368 0.784454223913892 NA NA prediction 0.512707930173048 Functional Gain - ZNF493 ENSG00000196268;ENSG00000269237 CDS Human other chr19:21588631 chr19:21588630 nonsynonymous SNV 0.109 2 20 hm7G_associated_SNPs_20245 0 0 1 0 3 ZNF493 chr19:21588658 5'GT 21588658 Upstream 29bp 18889 chr9 101818644 101818644 1 + G T COAD 101818645 + 101818625 101818665 41 TGGTGATCCTGGGCCACCGGGGCCCCCGGGGCCACCAGGAC TGGTGATCCTGGGCCACCGTGGCCCCCGGGGCCACCAGGAC < 41bp 0.407389856541126 0.7563242808447 NA NA prediction 0.512648561689399 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101818645 chr9:101818644 nonsynonymous SNV 0.835 5 20 hm7G_associated_SNPs_20249 0 0 0 0 1 COL15A1 chr9:101818686 5'GT 101818686 Upstream 43bp 18890 chr6 15512550 15512550 1 + G T BLCA 15512551 + 15512531 15512571 41 TGTGTCCAAAGTGTGCTGTGGGTACAGCGTGTCTGAAACCG TGTGTCCAAAGTGTGCTGTTGGTACAGCGTGTCTGAAACCG < 41bp 0.416817526164112 0.756294706517405 NA NA prediction 0.512589413034811 Functional Gain - JARID2 ENSG00000008083 CDS Human protein_coding chr6:15512551 chr6:15512550 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20251 0 0 0 0 1 JARID2 chr6:15512621 5'GT 15512621 Upstream 72bp 18891 chr1 18961619 18961619 1 + G T PRAD 18961620 + 18961600 18961640 41 TGAAGCAGGTGGCGACTCCGGATGTAGAGAAAAAGATTGAG TGAAGCAGGTGGCGACTCCTGATGTAGAGAAAAAGATTGAG < 41bp 0.619137921742002 0.875429036304187 NA NA prediction 0.512582229124371 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:18961620 chr1:18961619 synonymous SNV . 0 20 hm7G_associated_SNPs_20252 0 0 0 0 1 PAX7 chr1:18961605 3'AG 18961605 Downstream 15bp 18892 chr18 19209092 19209092 1 + G T STAD 19209093 + 19209073 19209113 41 AGAGGAAGAGGGGGTCCTAGGCGATAATGTCTCTCAAGATT AGAGGAAGAGGGGGTCCTATGCGATAATGTCTCTCAAGATT < 41bp 0.586150288238412 0.842439339371858 NA NA prediction 0.512578102266892 Functional Gain - SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19209093 chr18:19209092 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20253 0 0 1 0 1 SNRPD1 chr18:19209023 3'AG 19209023 Downstream 70bp 18893 chr9 12698640 12698640 1 + G T UCEC 12698641 + 12698621 12698661 41 GGAAGATTATGATACCCTGGGAACACTTTGTAACAGTAAGT GGAAGATTATGATACCCTGTGAACACTTTGTAACAGTAAGT < 41bp 0.435290316196399 0.756284530863428 NA NA prediction 0.512569061726857 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12698641 chr9:12698640 stopgain 1.000 1 20 hm7G_associated_SNPs_20254 0 0 0 0 1 TYRP1 chr9:12698655 5'GT 12698655 Upstream 16bp 18894 chr17 42392949 42392949 1 + G T READ 42392950 + 42392930 42392970 41 CGAGAAACGGGAGCTGGAAGGCGTGATCCTGGAGCTGCAGG CGAGAAACGGGAGCTGGAATGCGTGATCCTGGAGCTGCAGG < 41bp 0.618763001907247 0.875041245874613 NA NA prediction 0.512556487934731 Functional Gain - RUNDC3A ENSG00000108309 CDS Human protein_coding chr17:42392950 chr17:42392949 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_20255 0 0 0 0 1 RUNDC3A chr17:42392977 5'GT 42392977 Upstream 29bp 18895 chr14 31139478 31139478 1 + G T LGG 31139479 + 31139459 31139499 41 TAGGATTTCCATTTAAACAGGGTTAATTTGGAAGAATCTTC TAGGATTTCCATTTAAACATGGTTAATTTGGAAGAATCTTC < 41bp 0.592196370976058 0.848464236692905 NA NA prediction 0.512535731433694 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31139479 chr14:31139478 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20256 0 0 1 0 1 SCFD1 chr14:31139462 3'AG 31139462 Downstream 17bp 18896 chr19 55815098 55815098 1 + G T LUSC 55815099 + 55815079 55815119 41 GGGAAGCGGCGACCAGAGCGGAAGTCCATGGAAGTCCTGAG GGGAAGCGGCGACCAGAGCTGAAGTCCATGGAAGTCCTGAG < 41bp 0.626222396792614 0.882488149448772 NA NA prediction 0.512531505312317 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55815099 chr19:55815098 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_20257 0 0 0 0 2 BRSK1 chr19:55815035 3'AG 55815035 Downstream 64bp 18897 chr19 55815098 55815098 1 + G T LUSC 55815099 + 55815079 55815119 41 GGGAAGCGGCGACCAGAGCGGAAGTCCATGGAAGTCCTGAG GGGAAGCGGCGACCAGAGCTGAAGTCCATGGAAGTCCTGAG < 41bp 0.626222396792614 0.882488149448772 NA NA prediction 0.512531505312317 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55815099 chr19:55815098 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_20257 0 0 0 0 2 BRSK1 chr19:55815194 5'GT 55815194 Upstream 97bp 18898 chr20 56139263 56139263 1 + G T LUSC 56139264 + 56139244 56139284 41 CCCAGAAAATGGCTTTTTCGGTGTCGCTCCTGGGACTTCAG CCCAGAAAATGGCTTTTTCTGTGTCGCTCCTGGGACTTCAG < 41bp 0.428257688201195 0.756248295241393 NA NA prediction 0.512496590482786 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56139264 chr20:56139263 nonsynonymous SNV 0.876 4 20 hm7G_associated_SNPs_20259 0 0 1 0 1 PCK1 chr20:56139225 3'AG 56139225 Downstream 39bp 18899 chr22 47064750 47064750 1 + G T COAD 47064751 + 47064731 47064771 41 AGCTGTATGTGGCGCTCTGGGCTGCCTTCCTGGCCTCCTGC AGCTGTATGTGGCGCTCTGTGCTGCCTTCCTGGCCTCCTGC < 41bp 0.40286576733028 0.756244031885928 NA NA prediction 0.512488063771856 Functional Gain - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47064751 chr22:47064750 nonsynonymous SNV 0.899 2 20 hm7G_associated_SNPs_20260 0 0 1 0 2 GRAMD4 chr22:47064696 3'AG 47064696 Downstream 55bp 18900 chr22 47064750 47064750 1 + G T COAD 47064751 + 47064731 47064771 41 AGCTGTATGTGGCGCTCTGGGCTGCCTTCCTGGCCTCCTGC AGCTGTATGTGGCGCTCTGTGCTGCCTTCCTGGCCTCCTGC < 41bp 0.40286576733028 0.756244031885928 NA NA prediction 0.512488063771856 Functional Gain - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47064751 chr22:47064750 nonsynonymous SNV 0.899 2 20 hm7G_associated_SNPs_20260 0 0 1 0 2 GRAMD4 chr22:47064805 5'GT 47064805 Upstream 56bp 18901 chr10 26575413 26575413 1 + G T LUSC 26575414 + 26575394 26575434 41 TTTAAACTATGGCTGATGTGGAGGGCAAAGGTGAGTATGTA TTTAAACTATGGCTGATGTTGAGGGCAAAGGTGAGTATGTA < 41bp 0.579621353410275 0.835855343638341 NA NA prediction 0.512467980456131 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26575414 chr10:26575413 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20262 0 0 0 0 1 GAD2 chr10:26575423 5'GT 26575423 Upstream 11bp 18902 chr7 133906639 133906639 1 + G T LUAD 133906640 + 133906620 133906660 41 AACTACCTCATTAAATTTTGGGCCAAACTTTCAGCCAAAAA AACTACCTCATTAAATTTTTGGCCAAACTTTCAGCCAAAAA < 41bp 0.437564540590454 0.756217474051014 NA NA prediction 0.512434948102029 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133906640 chr7:133906639 nonsynonymous SNV 0.359 0 20 hm7G_associated_SNPs_20264 0 0 0 0 1 LRGUK chr7:133906670 5'GT 133906670 Upstream 32bp 18903 chr8 10389039 10389039 1 + G T LUAD 10389040 + 10389020 10389060 41 AATGCTGGGTGGCAGGTTGGGGCCAGACCAATGCTGGTATG AATGCTGGGTGGCAGGTTGTGGCCAGACCAATGCTGGTATG < 41bp 0.427497933240315 0.75621541461236 NA NA prediction 0.512430829224719 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10389040 chr8:10389039 nonsynonymous SNV 0.800 4 20 hm7G_associated_SNPs_20265 0 0 0 1 1 PRSS55 chr8:10389055 5'GT 10389055 Upstream 17bp 18904 chr4 48035065 48035065 1 + G T LGG 48035066 + 48035046 48035086 41 CTTTTGCACCTGCCACCTTGGTCACCCCTCTGGGTGCTTTG CTTTTGCACCTGCCACCTTTGTCACCCCTCTGGGTGCTTTG < 41bp 0.421389441913811 0.756209822326089 NA NA prediction 0.512419644652178 Functional Gain - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48035066 chr4:48035065 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20266 0 0 0 0 2 NIPAL1 chr4:48035010 3'AG 48035010 Downstream 56bp 18905 chr4 48035065 48035065 1 + G T LGG 48035066 + 48035046 48035086 41 CTTTTGCACCTGCCACCTTGGTCACCCCTCTGGGTGCTTTG CTTTTGCACCTGCCACCTTTGTCACCCCTCTGGGTGCTTTG < 41bp 0.421389441913811 0.756209822326089 NA NA prediction 0.512419644652178 Functional Gain - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48035066 chr4:48035065 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20266 0 0 0 0 2 NIPAL1 chr4:48035100 5'GT 48035100 Upstream 36bp 18906 chr19 52876489 52876489 1 + G T LUAD 52876490 + 52876470 52876510 41 ACAGGAACCTGGTCTTTCTGGGTGAGGATAATGTCCCTTCA ACAGGAACCTGGTCTTTCTTGGTGAGGATAATGTCCCTTCA < 41bp 0.603589126213752 0.859794871227841 NA NA prediction 0.512411490028179 Functional Gain - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52876490 chr19:52876489 synonymous SNV . 0 20 hm7G_associated_SNPs_20267 0 0 0 1 1 ZNF880 chr19:52876490 5'GT 52876490 Upstream 2bp 18907 chr4 99339827 99339827 1 + G T LIHC 99339828 + 99339808 99339848 41 ATGCAAATTGTATTCATATGGTAGACAATGGGATTGTAGAA ATGCAAATTGTATTCATATTGTAGACAATGGGATTGTAGAA < 41bp 0.456401424239171 0.756189929115171 NA NA prediction 0.512379858230343 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99339828 chr4:99339827 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20268 0 0 1 0 1 RAP1GDS1 chr4:99339808 3'AG 99339808 Downstream 20bp 18908 chr19 18279334 18279334 1 + G T HNSC 18279335 + 18279315 18279355 41 GAAAATCAACGAGTGGCTGGGGATTAAAAATGAGACTGAGG GAAAATCAACGAGTGGCTGTGGATTAAAAATGAGACTGAGG < 41bp 0.621296217226632 0.877484639727445 NA NA prediction 0.512376845001626 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18279335 chr19:18279334 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20269 0 0 0 0 2 PIK3R2 chr19:18279285 3'AG 18279285 Downstream 50bp 18909 chr19 18279334 18279334 1 + G T HNSC 18279335 + 18279315 18279355 41 GAAAATCAACGAGTGGCTGGGGATTAAAAATGAGACTGAGG GAAAATCAACGAGTGGCTGTGGATTAAAAATGAGACTGAGG < 41bp 0.621296217226632 0.877484639727445 NA NA prediction 0.512376845001626 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18279335 chr19:18279334 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20269 0 0 0 0 2 PIK3R2 chr19:18279356 5'GT 18279356 Upstream 23bp 18910 chr4 70866583 70866583 1 + G T UCEC 70866584 + 70866564 70866604 41 CCTTGTGTGTATACAGTATGGGTATGGCCCTTATCAGCCAG CCTTGTGTGTATACAGTATTGGTATGGCCCTTATCAGCCAG < 41bp 0.456468045457572 0.756188067183435 NA NA prediction 0.51237613436687 Functional Gain - STATH ENSG00000126549 CDS Human protein_coding chr4:70866584 chr4:70866583 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_20270 0 0 0 0 1 STATH chr4:70866580 3'AG 70866580 Downstream 4bp 18911 chr1 113197226 113197226 1 + G T PRAD 113197227 + 113197207 113197247 41 GATGGAGGTCTGAAGTCTTGGAGAGAATCCTGTGACAGTGC GATGGAGGTCTGAAGTCTTTGAGAGAATCCTGTGACAGTGC < 41bp 0.434397979455592 0.756121603398173 NA NA prediction 0.512243206796346 Functional Gain - CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113197227 chr1:113197226 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20275 0 0 1 0 1 CAPZA1 chr1:113197293 5'GT 113197293 Upstream 68bp 18912 chr13 46067491 46067491 1 + G T LIHC 46067492 + 46067472 46067512 41 TTCATTTTAGTGAGCTTTTGGAGAAACTGTGTGTGTCATTG TTCATTTTAGTGAGCTTTTTGAGAAACTGTGTGTGTCATTG < 41bp 0.447722640617536 0.756117037407356 NA NA prediction 0.512234074814712 Functional Gain - COG3 ENSG00000136152 CDS Human protein_coding chr13:46067492 chr13:46067491 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_20276 0 0 1 0 1 COG3 chr13:46067482 3'AG 46067482 Downstream 10bp 18913 chr1 79002109 79002109 1 + G T OV 79002110 + 79002090 79002130 41 GGTTACAATGGCCAACATTGGAATAAATGGAAATCATTCTC GGTTACAATGGCCAACATTTGAATAAATGGAAATCATTCTC < 41bp 0.557342154698121 0.813457192864466 NA NA prediction 0.51223007633269 Functional Gain - PTGFR ENSG00000122420 CDS Human protein_coding chr1:79002110 chr1:79002109 stopgain 0.998 1 20 hm7G_associated_SNPs_20277 0 0 0 0 1 PTGFR chr1:79002091 3'AG 79002091 Downstream 19bp 18914 chr10 101124191 101124191 1 + G T BLCA 101124192 + 101124172 101124212 41 AGGGTAAAGTGGAGGTGGAGGTTGGTAAGGAAGGCCTTCGC AGGGTAAAGTGGAGGTGGATGTTGGTAAGGAAGGCCTTCGC < 41bp 0.602263685091627 0.85837816303125 NA NA prediction 0.512228955879247 Functional Gain - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101124192 chr10:101124191 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_20278 0 0 0 0 1 CNNM1 chr10:101124273 5'GT 101124273 Upstream 83bp 18915 chr5 36680530 36680530 1 + G T SARC 36680531 + 36680511 36680551 41 CCATCACCTTCAAGTGCCTGGAAGAGAACAATGGCGTGGAC CCATCACCTTCAAGTGCCTTGAAGAGAACAATGGCGTGGAC < 41bp 0.603743275842511 0.859833227751142 NA NA prediction 0.512179903817262 Functional Gain - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36680531 chr5:36680530 synonymous SNV . 0 20 hm7G_associated_SNPs_20280 0 0 0 0 1 SLC1A3 chr5:36680497 3'AG 36680497 Downstream 34bp 18916 chr11 20628644 20628644 1 + G T COAD 20628645 + 20628625 20628665 41 TGGGCCAGTTTGCCAGCCAGGGACCAGTGTCTGTGTGGAAG TGGGCCAGTTTGCCAGCCATGGACCAGTGTCTGTGTGGAAG < 41bp 0.62300235342173 0.879092136688829 NA NA prediction 0.512179566534198 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20628645 chr11:20628644 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_20281 0 0 0 0 2 SLC6A5 chr11:20628553 3'AG 20628553 Downstream 92bp 18917 chr11 20628644 20628644 1 + G T COAD 20628645 + 20628625 20628665 41 TGGGCCAGTTTGCCAGCCAGGGACCAGTGTCTGTGTGGAAG TGGGCCAGTTTGCCAGCCATGGACCAGTGTCTGTGTGGAAG < 41bp 0.62300235342173 0.879092136688829 NA NA prediction 0.512179566534198 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20628645 chr11:20628644 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_20281 0 0 0 0 2 SLC6A5 chr11:20628684 5'GT 20628684 Upstream 41bp 18918 chr19 18677978 18677978 1 + G T UCEC 18677979 + 18677959 18677999 41 TGGCCAGGCAGCACCCAGAGGCCTTCAGCCGTAAGTGTCAC TGGCCAGGCAGCACCCAGATGCCTTCAGCCGTAAGTGTCAC < 41bp 0.624870051640105 0.880944602304703 NA NA prediction 0.512149101329197 Functional Gain - KXD1 ENSG00000105700 CDS Human protein_coding chr19:18677979 chr19:18677978 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_20283 0 0 1 1 2 KXD1 chr19:18677942 3'AG 18677942 Downstream 37bp 18919 chr19 18677978 18677978 1 + G T UCEC 18677979 + 18677959 18677999 41 TGGCCAGGCAGCACCCAGAGGCCTTCAGCCGTAAGTGTCAC TGGCCAGGCAGCACCCAGATGCCTTCAGCCGTAAGTGTCAC < 41bp 0.624870051640105 0.880944602304703 NA NA prediction 0.512149101329197 Functional Gain - KXD1 ENSG00000105700 CDS Human protein_coding chr19:18677979 chr19:18677978 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_20283 0 0 1 1 2 KXD1 chr19:18677988 5'GT 18677988 Upstream 11bp 18920 chr1 32677737 32677737 1 + G T UCEC 32677738 + 32677718 32677758 41 TGTCCCAGGCTGCCAGCCAGGACTGGGAAACTGTGTTGAAG TGTCCCAGGCTGCCAGCCATGACTGGGAAACTGTGTTGAAG < 41bp 0.611608025133208 0.867665592194006 NA NA prediction 0.512115134121596 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32677738 chr1:32677737 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_20284 0 0 0 0 1 DCDC2B chr1:32677802 5'GT 32677802 Upstream 66bp 18921 chr10 45938529 45938529 1 + G T UCEC 45938530 + 45938510 45938550 41 CACGTGCAGATGGTGCAGAGGGCCATGAAGGACCTGACCTA CACGTGCAGATGGTGCAGATGGCCATGAAGGACCTGACCTA < 41bp 0.624210849922937 0.880257839284325 NA NA prediction 0.512093978722778 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938530 chr10:45938529 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_20285 0 0 1 0 1 ALOX5 chr10:45938486 3'AG 45938486 Downstream 44bp 18922 chr11 66291009 66291009 1 + G T STAD 66291010 + 66290990 66291030 41 ACACAAGGTCCTAGTGGTGGGCAGCACCCAAGACAGCCTGC ACACAAGGTCCTAGTGGTGTGCAGCACCCAAGACAGCCTGC < 41bp 0.624937897502768 0.880946479062886 NA NA prediction 0.512017163120235 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66291010 chr11:66291009 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20287 0 0 1 0 1 BBS1 chr11:66290927 3'AG 66290927 Downstream 83bp 18923 chr11 64116832 64116832 1 + G T PRAD 64116833 + 64116813 64116853 41 AAGCTGTGGTGCGGGGCAAGGAGTTGGGGGACCGGCTGGAG AAGCTGTGGTGCGGGGCAATGAGTTGGGGGACCGGCTGGAG < 41bp 0.623542267606795 0.879548803146656 NA NA prediction 0.512013071079723 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64116833 chr11:64116832 nonsynonymous SNV 0.066 1 20 hm7G_associated_SNPs_20288 0 0 1 0 2 CCDC88B chr11:64116803 3'AG 64116803 Downstream 30bp 18924 chr11 64116832 64116832 1 + G T PRAD 64116833 + 64116813 64116853 41 AAGCTGTGGTGCGGGGCAAGGAGTTGGGGGACCGGCTGGAG AAGCTGTGGTGCGGGGCAATGAGTTGGGGGACCGGCTGGAG < 41bp 0.623542267606795 0.879548803146656 NA NA prediction 0.512013071079723 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64116833 chr11:64116832 nonsynonymous SNV 0.066 1 20 hm7G_associated_SNPs_20288 0 0 1 0 2 CCDC88B chr11:64116930 5'GT 64116930 Upstream 99bp 18925 chr4 79500235 79500235 1 + G T LIHC 79500236 + 79500216 79500256 41 GAGAGGTCAAATGCACAGCGGCAGCTGATTGTTAAGGAATA GAGAGGTCAAATGCACAGCTGCAGCTGATTGTTAAGGAATA < 41bp 0.611429991473644 0.867428237815655 NA NA prediction 0.511996492684023 Functional Gain - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79500236 chr4:79500235 nonsynonymous SNV 0.043 4 20 hm7G_associated_SNPs_20289 0 0 0 0 2 ANXA3 chr4:79500181 3'AG 79500181 Downstream 55bp 18926 chr4 79500235 79500235 1 + G T LIHC 79500236 + 79500216 79500256 41 GAGAGGTCAAATGCACAGCGGCAGCTGATTGTTAAGGAATA GAGAGGTCAAATGCACAGCTGCAGCTGATTGTTAAGGAATA < 41bp 0.611429991473644 0.867428237815655 NA NA prediction 0.511996492684023 Functional Gain - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79500236 chr4:79500235 nonsynonymous SNV 0.043 4 20 hm7G_associated_SNPs_20289 0 0 0 0 2 ANXA3 chr4:79500275 5'GT 79500275 Upstream 41bp 18927 chr7 44797544 44797544 1 + G T LUSC 44797545 + 44797525 44797565 41 AACCCTACTGGCATAGGAGGGGTAATGGGCCCCTCTGGCCT AACCCTACTGGCATAGGAGTGGTAATGGGCCCCTCTGGCCT < 41bp 0.407772091627858 0.755995401087722 NA NA prediction 0.511990802175445 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44797545 chr7:44797544 nonsynonymous SNV 0.957 1 20 hm7G_associated_SNPs_20290 0 0 1 0 1 ZMIZ2 chr7:44797447 3'AG 44797447 Downstream 98bp 18928 chr1 228345534 228345534 1 + G T PAAD 228345535 + 228345515 228345555 41 ACTCCACCTTCGTGGGCAAGGTGTGGCTCACGGTGCTGGTG ACTCCACCTTCGTGGGCAATGTGTGGCTCACGGTGCTGGTG < 41bp 0.599025731732015 0.855012021068236 NA NA prediction 0.511972578672441 Functional Gain - GJC2 ENSG00000198835 CDS Human protein_coding chr1:228345535 chr1:228345534 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_20292 0 0 0 0 1 GJC2 chr1:228345441 3'AG 228345441 Downstream 94bp 18929 chr17 54543802 54543802 1 + G T LUAD 54543803 + 54543783 54543823 41 ATACTCATAGTCACCATCAGGGAGGTGGAGATGCTTTATTC ATACTCATAGTCACCATCATGGAGGTGGAGATGCTTTATTC < 41bp 0.443521196662047 0.755984482336763 NA NA prediction 0.511968964673526 Functional Gain - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54543803 chr17:54543802 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_20293 0 0 0 0 1 ANKFN1 chr17:54543717 3'AG 54543717 Downstream 86bp 18930 chr1 206610329 206610329 1 + G T UCEC 206610330 + 206610310 206610350 41 TCCAGGACTACAGCATGAAGGAATTTTCCGGGTGTCAGGAT TCCAGGACTACAGCATGAATGAATTTTCCGGGTGTCAGGAT < 41bp 0.421847388984717 0.75596876053079 NA NA prediction 0.511937521061581 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206610330 chr1:206610329 stopgain 1.000 1 20 hm7G_associated_SNPs_20295 0 0 1 0 2 SRGAP2 chr1:206610315 3'AG 206610315 Downstream 15bp 18931 chr1 206610329 206610329 1 + G T UCEC 206610330 + 206610310 206610350 41 TCCAGGACTACAGCATGAAGGAATTTTCCGGGTGTCAGGAT TCCAGGACTACAGCATGAATGAATTTTCCGGGTGTCAGGAT < 41bp 0.421847388984717 0.75596876053079 NA NA prediction 0.511937521061581 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206610330 chr1:206610329 stopgain 1.000 1 20 hm7G_associated_SNPs_20295 0 0 1 0 2 SRGAP2 chr1:206610392 5'GT 206610392 Upstream 64bp 18932 chr10 94828094 94828094 1 + G T UCEC 94828095 + 94828075 94828115 41 AGGGCTACCAGATCCCCAAGGGCTGGAGCGTGATGTATAGC AGGGCTACCAGATCCCCAATGGCTGGAGCGTGATGTATAGC < 41bp 0.611756851701795 0.867721324527006 NA NA prediction 0.511928945650423 Functional Gain - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94828095 chr10:94828094 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_20296 0 0 0 0 1 CYP26C1 chr10:94828077 3'AG 94828077 Downstream 18bp 18933 chr6 109232160 109232160 1 + G T UCEC 109232161 + 109232141 109232181 41 CTTATATTTAAAATTAGCAGGAATGAGAAGAATGATTCTTT CTTATATTTAAAATTAGCATGAATGAGAAGAATGATTCTTT < 41bp 0.590977435823656 0.84692804624822 NA NA prediction 0.511901220849128 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109232161 chr6:109232160 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20298 0 0 0 0 2 ARMC2 chr6:109232102 3'AG 109232102 Downstream 59bp 18934 chr6 109232160 109232160 1 + G T UCEC 109232161 + 109232141 109232181 41 CTTATATTTAAAATTAGCAGGAATGAGAAGAATGATTCTTT CTTATATTTAAAATTAGCATGAATGAGAAGAATGATTCTTT < 41bp 0.590977435823656 0.84692804624822 NA NA prediction 0.511901220849128 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109232161 chr6:109232160 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20298 0 0 0 0 2 ARMC2 chr6:109232204 5'GT 109232204 Upstream 45bp 18935 chr3 183774069 183774069 1 + G T LUAD 183774070 + 183774050 183774090 41 TCCCAGACATCTTCATCGTGGAATCGTGCGTATGCAGGCTG TCCCAGACATCTTCATCGTTGAATCGTGCGTATGCAGGCTG < 41bp 0.441018117316636 0.755943631612588 NA NA prediction 0.511887263225177 Functional Gain - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183774070 chr3:183774069 synonymous SNV . 0 20 hm7G_associated_SNPs_20299 0 0 0 0 1 HTR3C chr3:183774074 5'GT 183774074 Upstream 6bp 18936 chr11 124741022 124741022 1 + G T UCEC 124741023 + 124741003 124741043 41 CTGCCATCTTCTGGCAGAAGGAGGGGAGTCAGGTGGGTGGC CTGCCATCTTCTGGCAGAATGAGGGGAGTCAGGTGGGTGGC < 41bp 0.611186105862864 0.867126457490998 NA NA prediction 0.511880703256269 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124741023 chr11:124741022 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20301 0 0 0 0 1 ROBO3 chr11:124741034 5'GT 124741034 Upstream 13bp 18937 chr16 81272516 81272516 1 + G T UCEC 81272517 + 81272497 81272537 41 CCTCGGCACCCTGAGCAATGGATATAATATTTGGCAGGAAT CCTCGGCACCCTGAGCAATTGATATAATATTTGGCAGGAAT < 41bp 0.443966371658088 0.755925943955904 NA NA prediction 0.511851887911808 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81272517 chr16:81272516 nonsynonymous SNV 0.111 3 20 hm7G_associated_SNPs_20302 0 0 0 0 1 BCO1 chr16:81272577 5'GT 81272577 Upstream 62bp 18938 chr6 138201373 138201373 1 + G T UCEC 138201374 + 138201354 138201394 41 AGATTTCATGAGGCCAAAAGGACAGAAGAGCAACTGGTGAG AGATTTCATGAGGCCAAAATGACAGAAGAGCAACTGGTGAG < 41bp 0.604697428149453 0.860619701043776 NA NA prediction 0.511844545788645 Functional Gain - TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138201374 chr6:138201373 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_20303 0 0 1 0 1 TNFAIP3 chr6:138201389 5'GT 138201389 Upstream 17bp 18939 chr19 20215133 20215133 1 + G T OV 20215134 + 20215114 20215154 41 GCACAGCAGAATTTATATAGGGATGTGATGTTAGAGAACTA GCACAGCAGAATTTATATATGGATGTGATGTTAGAGAACTA < 41bp 0.605087644483828 0.861006443020322 NA NA prediction 0.511837597072988 Functional Gain - ZNF90 ENSG00000213988 CDS Human protein_coding chr19:20215134 chr19:20215133 nonsynonymous SNV 0.304 3 20 hm7G_associated_SNPs_20305 0 0 0 0 2 ZNF90 chr19:20215048 3'AG 20215048 Downstream 86bp 18940 chr19 20215133 20215133 1 + G T OV 20215134 + 20215114 20215154 41 GCACAGCAGAATTTATATAGGGATGTGATGTTAGAGAACTA GCACAGCAGAATTTATATATGGATGTGATGTTAGAGAACTA < 41bp 0.605087644483828 0.861006443020322 NA NA prediction 0.511837597072988 Functional Gain - ZNF90 ENSG00000213988 CDS Human protein_coding chr19:20215134 chr19:20215133 nonsynonymous SNV 0.304 3 20 hm7G_associated_SNPs_20305 0 0 0 0 2 ZNF90 chr19:20215174 5'GT 20215174 Upstream 42bp 18941 chr9 34512401 34512401 1 + G T COAD 34512402 + 34512382 34512422 41 CACCACGGAAGTTCCTGAGGGGTTGCAGCTGCACCCAGTGG CACCACGGAAGTTCCTGAGTGGTTGCAGCTGCACCCAGTGG < 41bp 0.616060837482311 0.871969401829969 NA NA prediction 0.511817128695318 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34512402 chr9:34512401 nonsynonymous SNV 0.783 1 20 hm7G_associated_SNPs_20306 0 0 0 0 2 DNAI1 chr9:34512335 3'AG 34512335 Downstream 67bp 18942 chr9 34512401 34512401 1 + G T COAD 34512402 + 34512382 34512422 41 CACCACGGAAGTTCCTGAGGGGTTGCAGCTGCACCCAGTGG CACCACGGAAGTTCCTGAGTGGTTGCAGCTGCACCCAGTGG < 41bp 0.616060837482311 0.871969401829969 NA NA prediction 0.511817128695318 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34512402 chr9:34512401 nonsynonymous SNV 0.783 1 20 hm7G_associated_SNPs_20306 0 0 0 0 2 DNAI1 chr9:34512422 5'GT 34512422 Upstream 22bp 18943 chr2 113325681 113325681 1 + G T LAML 113325682 + 113325662 113325702 41 CTGTGCAGAACTTAGCATTGGGCAAAGAAGAGCTAATTGGA CTGTGCAGAACTTAGCATTTGGCAAAGAAGAGCTAATTGGA < 41bp 0.608982047170393 0.864880122013844 NA NA prediction 0.511796149686903 Functional Gain - POLR1B ENSG00000125630 CDS Human protein_coding chr2:113325682 chr2:113325681 nonsynonymous SNV 0.991 1 20 hm7G_associated_SNPs_20310 0 0 1 0 1 POLR1B chr2:113325714 5'GT 113325714 Upstream 34bp 18944 chr18 47101754 47101754 1 + G T LUSC 47101755 + 47101735 47101775 41 GCAGGTTTGGATCCTGCCGGGCCCATGTTTGAAGGGGCCGA GCAGGTTTGGATCCTGCCGTGCCCATGTTTGAAGGGGCCGA < 41bp 0.623446459707891 0.87933396048801 NA NA prediction 0.511775001560238 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101755 chr18:47101754 nonsynonymous SNV 0.914 5 20 hm7G_associated_SNPs_20312 0 0 0 0 1 LIPG chr18:47101739 3'AG 47101739 Downstream 16bp 18945 chr1 165797073 165797073 1 + G T LUSC 165797074 + 165797054 165797094 41 GAGGGGCGGCGCGAACCATGGCCGGGGACAGCGAGCAGACC GAGGGGCGGCGCGAACCATTGCCGGGGACAGCGAGCAGACC < 41bp 0.603237846752854 0.859123552843382 NA NA prediction 0.511771412181055 Functional Gain - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165797074 chr1:165797073 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_20313 0 0 1 0 1 UCK2 chr1:165797169 5'GT 165797169 Upstream 97bp 18946 chr6 116944108 116944108 1 + G T LUSC 116944109 + 116944089 116944129 41 AAATAGCAGAAAAGCAAAAGGCTCTTTTTCTCCAGGGACAT AAATAGCAGAAAAGCAAAATGCTCTTTTTCTCCAGGGACAT < 41bp 0.613478251386303 0.869358038246238 NA NA prediction 0.51175957371987 Functional Gain - RSPH4A ENSG00000111834 CDS Human protein_coding chr6:116944109 chr6:116944108 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20315 0 0 0 0 1 RSPH4A chr6:116944165 5'GT 116944165 Upstream 58bp 18947 chr12 117365907 117365907 1 + G T LUSC 117365908 + 117365888 117365928 41 ATATTTCAGTATCTGGACAGGAAAGAACTAGGAAGATGTGC ATATTTCAGTATCTGGACATGAAAGAACTAGGAAGATGTGC < 41bp 0.614137498468283 0.870014521860362 NA NA prediction 0.511754046784159 Functional Gain - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117365908 chr12:117365907 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_20316 0 0 1 1 2 FBXW8 chr12:117365828 3'AG 117365828 Downstream 80bp 18948 chr12 117365907 117365907 1 + G T LUSC 117365908 + 117365888 117365928 41 ATATTTCAGTATCTGGACAGGAAAGAACTAGGAAGATGTGC ATATTTCAGTATCTGGACATGAAAGAACTAGGAAGATGTGC < 41bp 0.614137498468283 0.870014521860362 NA NA prediction 0.511754046784159 Functional Gain - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117365908 chr12:117365907 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_20316 0 0 1 1 2 FBXW8 chr12:117365932 5'GT 117365932 Upstream 26bp 18949 chr7 44797540 44797540 1 + G T UCEC 44797541 + 44797521 44797561 41 CATGAACCCTACTGGCATAGGAGGGGTAATGGGCCCCTCTG CATGAACCCTACTGGCATATGAGGGGTAATGGGCCCCTCTG < 41bp 0.412150216864048 0.755857502322497 NA NA prediction 0.511715004644994 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44797541 chr7:44797540 stopgain 0.922 0 20 hm7G_associated_SNPs_20317 0 0 1 0 1 ZMIZ2 chr7:44797447 3'AG 44797447 Downstream 94bp 18950 chr7 120591237 120591237 1 + G T LUSC 120591238 + 120591218 120591258 41 TGATTGAGCAGCTTCCTATGGATCTGCGGGACCGCTTCACG TGATTGAGCAGCTTCCTATTGATCTGCGGGACCGCTTCACG < 41bp 0.609869400334372 0.865715882626316 NA NA prediction 0.511692964583887 Functional Gain - ING3 ENSG00000071243 CDS Human protein_coding chr7:120591238 chr7:120591237 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_20318 0 0 1 0 1 ING3 chr7:120591218 3'AG 120591218 Downstream 20bp 18951 chr6 47686173 47686173 1 + G T UCEC 47686174 + 47686154 47686194 41 TAAATTAATGAATCGTCAAGGATGAAATGTGAGTATTAAAA TAAATTAATGAATCGTCAATGATGAAATGTGAGTATTAAAA < 41bp 0.568497834575622 0.824321168616999 NA NA prediction 0.511646668082753 Functional Gain - ADGRF4 ENSG00000153294 CDS Human protein_coding chr6:47686174 chr6:47686173 stopgain 0.944 0 20 hm7G_associated_SNPs_20320 0 0 0 0 1 ADGRF4 chr6:47686125 3'AG 47686125 Downstream 49bp 18952 chr2 17955558 17955558 1 + G T UCEC 17955559 + 17955539 17955579 41 GATTTACTCTTGAAAAAATGGAGTGGCCCAATCACTATGCA GATTTACTCTTGAAAAAATTGAGTGGCCCAATCACTATGCA < 41bp 0.443555060497158 0.755817610539865 NA NA prediction 0.51163522107973 Functional Gain - GEN1 ENSG00000178295 CDS Human protein_coding chr2:17955559 chr2:17955558 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20322 0 0 1 0 1 GEN1 chr2:17955538 3'AG 17955538 Downstream 21bp 18953 chr3 107646807 107646807 1 + G T rs9837335 107646808 + 107646788 107646828 41 GCAGCCTCGCGGGCTGCCCGGGACTTCATCAAGCCCGGGTC GCAGCCTCGCGGGCTGCCCTGGACTTCATCAAGCCCGGGTC < 41bp 0.442793659580698 0.755806310672018 NA NA prediction 0.511612621344037 Functional Gain - LINC00636 ENSG00000240423 ncRNA_exonic Human lincRNA chr3:107646808 chr3:107646807 . . 0 20 hm7G_associated_SNPs_20323 0 0 0 0 1 LINC00636 chr3:107646720 3'AG 107646720 Downstream 88bp 18954 chr12 46287294 46287294 1 + G T COAD 46287295 + 46287275 46287315 41 ACTTATGGCTCTGAGGAGAGGATCAAGAAACCTTGTCTTTC ACTTATGGCTCTGAGGAGATGATCAAGAAACCTTGTCTTTC < 41bp 0.448103762852872 0.755795282767156 NA NA prediction 0.511590565534313 Functional Gain - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46287295 chr12:46287294 stopgain 1.000 1 20 hm7G_associated_SNPs_20324 0 0 1 0 2 ARID2 chr12:46287203 3'AG 46287203 Downstream 92bp 18955 chr12 46287294 46287294 1 + G T COAD 46287295 + 46287275 46287315 41 ACTTATGGCTCTGAGGAGAGGATCAAGAAACCTTGTCTTTC ACTTATGGCTCTGAGGAGATGATCAAGAAACCTTGTCTTTC < 41bp 0.448103762852872 0.755795282767156 NA NA prediction 0.511590565534313 Functional Gain - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46287295 chr12:46287294 stopgain 1.000 1 20 hm7G_associated_SNPs_20324 0 0 1 0 2 ARID2 chr12:46287326 5'GT 46287326 Upstream 33bp 18956 chr4 39241934 39241934 1 + G T UCEC 39241935 + 39241915 39241955 41 TTTGGCTCATTATGAGAAAGGAATAACAGGTGATAATAAGG TTTGGCTCATTATGAGAAATGAATAACAGGTGATAATAAGG < 41bp 0.444186571965255 0.755792572310932 NA NA prediction 0.511585144621863 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39241935 chr4:39241934 stopgain 0.992 1 20 hm7G_associated_SNPs_20325 0 0 0 0 2 WDR19 chr4:39241897 3'AG 39241897 Downstream 38bp 18957 chr4 39241934 39241934 1 + G T UCEC 39241935 + 39241915 39241955 41 TTTGGCTCATTATGAGAAAGGAATAACAGGTGATAATAAGG TTTGGCTCATTATGAGAAATGAATAACAGGTGATAATAAGG < 41bp 0.444186571965255 0.755792572310932 NA NA prediction 0.511585144621863 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39241935 chr4:39241934 stopgain 0.992 1 20 hm7G_associated_SNPs_20325 0 0 0 0 2 WDR19 chr4:39241954 5'GT 39241954 Upstream 21bp 18958 chr22 31523954 31523954 1 + G T LUAD 31523955 + 31523935 31523975 41 AGCCTCGTGTTCTGGTTCGGGGACCTGAACTTCCGCATTGA AGCCTCGTGTTCTGGTTCGTGGACCTGAACTTCCGCATTGA < 41bp 0.424416654554867 0.755762579642845 NA NA prediction 0.51152515928569 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31523955 chr22:31523954 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_20328 0 0 0 0 2 INPP5J chr22:31523937 3'AG 31523937 Downstream 18bp 18959 chr22 31523954 31523954 1 + G T LUAD 31523955 + 31523935 31523975 41 AGCCTCGTGTTCTGGTTCGGGGACCTGAACTTCCGCATTGA AGCCTCGTGTTCTGGTTCGTGGACCTGAACTTCCGCATTGA < 41bp 0.424416654554867 0.755762579642845 NA NA prediction 0.51152515928569 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31523955 chr22:31523954 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_20328 0 0 0 0 2 INPP5J chr22:31524048 5'GT 31524048 Upstream 95bp 18960 chr2 79348721 79348721 1 + G T LUAD 79348722 + 79348702 79348742 41 ACAGAGTTGCCCCAGGCCCGGATCAGCTGCCCAGAAGGCAC ACAGAGTTGCCCCAGGCCCTGATCAGCTGCCCAGAAGGCAC < 41bp 0.612494312385958 0.868249291152801 NA NA prediction 0.511509957533685 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348722 chr2:79348721 nonsynonymous SNV 0.317 1 20 hm7G_associated_SNPs_20329 0 0 0 0 2 REG1A chr2:79348688 3'AG 79348688 Downstream 34bp 18961 chr2 79348721 79348721 1 + G T LUAD 79348722 + 79348702 79348742 41 ACAGAGTTGCCCCAGGCCCGGATCAGCTGCCCAGAAGGCAC ACAGAGTTGCCCCAGGCCCTGATCAGCTGCCCAGAAGGCAC < 41bp 0.612494312385958 0.868249291152801 NA NA prediction 0.511509957533685 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348722 chr2:79348721 nonsynonymous SNV 0.317 1 20 hm7G_associated_SNPs_20329 0 0 0 0 2 REG1A chr2:79348806 5'GT 79348806 Upstream 86bp 18962 chr8 87567175 87567175 1 + G T UCEC 87567176 + 87567156 87567196 41 ATCATAAATCACGTGGCCAGGTTTGCTGCTGCAGCCACGCA ATCATAAATCACGTGGCCATGTTTGCTGCTGCAGCCACGCA < 41bp 0.598688002795701 0.854441279378495 NA NA prediction 0.511506553165589 Functional Gain - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87567176 chr8:87567175 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_20330 0 0 1 0 2 CPNE3 chr8:87567079 3'AG 87567079 Downstream 97bp 18963 chr8 87567175 87567175 1 + G T UCEC 87567176 + 87567156 87567196 41 ATCATAAATCACGTGGCCAGGTTTGCTGCTGCAGCCACGCA ATCATAAATCACGTGGCCATGTTTGCTGCTGCAGCCACGCA < 41bp 0.598688002795701 0.854441279378495 NA NA prediction 0.511506553165589 Functional Gain - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87567176 chr8:87567175 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_20330 0 0 1 0 2 CPNE3 chr8:87567212 5'GT 87567212 Upstream 38bp 18964 chr3 134256053 134256053 1 + G T UCEC 134256054 + 134256034 134256074 41 GCTTGATTTATCAGCAACAGGTATCTTCACTGGAGGCACAA GCTTGATTTATCAGCAACATGTATCTTCACTGGAGGCACAA < 41bp 0.419873563365524 0.755743695222795 NA NA prediction 0.51148739044559 Functional Gain - CEP63 ENSG00000182923 CDS Human protein_coding chr3:134256054 chr3:134256053 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20331 0 0 1 0 2 CEP63 chr3:134255997 3'AG 134255997 Downstream 57bp 18965 chr3 134256053 134256053 1 + G T UCEC 134256054 + 134256034 134256074 41 GCTTGATTTATCAGCAACAGGTATCTTCACTGGAGGCACAA GCTTGATTTATCAGCAACATGTATCTTCACTGGAGGCACAA < 41bp 0.419873563365524 0.755743695222795 NA NA prediction 0.51148739044559 Functional Gain - CEP63 ENSG00000182923 CDS Human protein_coding chr3:134256054 chr3:134256053 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20331 0 0 1 0 2 CEP63 chr3:134256110 5'GT 134256110 Upstream 58bp 18966 chr1 156702804 156702804 1 + G T MESO 156702805 + 156702785 156702825 41 GAAGCTGAGTGATTTCACAGGCTGCACCCAGGTTGTAGACG GAAGCTGAGTGATTTCACATGCTGCACCCAGGTTGTAGACG < 41bp 0.624482916694323 0.880205420067388 NA NA prediction 0.51144500674613 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702805 chr1:156702804 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_20332 0 0 1 0 2 RRNAD1 chr1:156702777 3'AG 156702777 Downstream 28bp 18967 chr1 156702804 156702804 1 + G T MESO 156702805 + 156702785 156702825 41 GAAGCTGAGTGATTTCACAGGCTGCACCCAGGTTGTAGACG GAAGCTGAGTGATTTCACATGCTGCACCCAGGTTGTAGACG < 41bp 0.624482916694323 0.880205420067388 NA NA prediction 0.51144500674613 Functional Gain - RRNAD1 ENSG00000143303 CDS Human protein_coding chr1:156702805 chr1:156702804 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_20332 0 0 1 0 2 RRNAD1 chr1:156702839 5'GT 156702839 Upstream 36bp 18968 chr1 192613472 192613472 1 + G T LUAD 192613473 + 192613453 192613493 41 TTCCTTAGAAAAATGAGCAGGCGGAATTGTTGGATTTGTAA TTCCTTAGAAAAATGAGCATGCGGAATTGTTGGATTTGTAA < 41bp 0.574368770456109 0.83008722250043 NA NA prediction 0.511436904088642 Functional Gain - RGS13 ENSG00000127074 CDS Human protein_coding chr1:192613473 chr1:192613472 nonsynonymous SNV 0.874 1 20 hm7G_associated_SNPs_20333 0 0 0 0 2 RGS13 chr1:192613461 3'AG 192613461 Downstream 12bp 18969 chr1 192613472 192613472 1 + G T LUAD 192613473 + 192613453 192613493 41 TTCCTTAGAAAAATGAGCAGGCGGAATTGTTGGATTTGTAA TTCCTTAGAAAAATGAGCATGCGGAATTGTTGGATTTGTAA < 41bp 0.574368770456109 0.83008722250043 NA NA prediction 0.511436904088642 Functional Gain - RGS13 ENSG00000127074 CDS Human protein_coding chr1:192613473 chr1:192613472 nonsynonymous SNV 0.874 1 20 hm7G_associated_SNPs_20333 0 0 0 0 2 RGS13 chr1:192613529 5'GT 192613529 Upstream 58bp 18970 chr19 16973248 16973248 1 + G T LIHC 16973249 + 16973229 16973269 41 ACCCATGAGCGACAGATCCGGGGACGGGATAAGCCGGGAAA ACCCATGAGCGACAGATCCTGGGACGGGATAAGCCGGGAAA < 41bp 0.627118159385922 0.882833868216378 NA NA prediction 0.511431417660912 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16973249 chr19:16973248 nonsynonymous SNV 0.074 3 20 hm7G_associated_SNPs_20334 0 0 1 0 1 SIN3B chr19:16973163 3'AG 16973163 Downstream 86bp 18971 chr1 12819346 12819346 1 + G T LUAD 12819347 + 12819327 12819367 41 CGGCATGGTTACAACCCGGGGCTGCCTCCACTCCGCACTTG CGGCATGGTTACAACCCGGTGCTGCCTCCACTCCGCACTTG < 41bp 0.410398573150849 0.755681707957259 NA NA prediction 0.511363415914519 Functional Gain - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12819347 chr1:12819346 nonsynonymous SNV 0.031 0 20 hm7G_associated_SNPs_20337 0 0 0 0 1 C1orf158 chr1:12819420 5'GT 12819420 Upstream 75bp 18972 chr5 172513516 172513516 1 + G T STAD 172513517 + 172513497 172513537 41 GTTGTAGCCTAGTGTAAGCGGAATGGATCCGCCTTTCGGGG GTTGTAGCCTAGTGTAAGCTGAATGGATCCGCCTTTCGGGG < 41bp 0.438377748881583 0.755673450208096 NA NA prediction 0.511346900416191 Functional Gain - CREBRF ENSG00000164463 CDS Human protein_coding chr5:172513517 chr5:172513516 stopgain 1.000 1 20 hm7G_associated_SNPs_20338 0 0 1 0 1 CREBRF chr5:172513504 3'AG 172513504 Downstream 13bp 18973 chr6 160500663 160500663 1 + G T LUSC 160500664 + 160500644 160500684 41 GGTGTGCACCTTTGCAGTCGGGCCAGAACAAGGAGGCTGTA GGTGTGCACCTTTGCAGTCTGGCCAGAACAAGGAGGCTGTA < 41bp 0.614257688309732 0.869930705807996 NA NA prediction 0.511346034996527 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160500664 chr6:160500663 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_20339 0 0 1 0 1 IGF2R chr6:160500612 3'AG 160500612 Downstream 52bp 18974 chr3 52829637 52829637 1 + G T HNSC 52829638 + 52829618 52829658 41 GAAACGGAGCCTCCCGGAAGGGGTAAGAACTTTCACCAGGG GAAACGGAGCCTCCCGGAATGGGTAAGAACTTTCACCAGGG < 41bp 0.436242755366584 0.755668697579127 NA NA prediction 0.511337395158253 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52829638 chr3:52829637 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_20340 0 0 1 0 2 ITIH3 chr3:52829619 3'AG 52829619 Downstream 19bp 18975 chr3 52829637 52829637 1 + G T HNSC 52829638 + 52829618 52829658 41 GAAACGGAGCCTCCCGGAAGGGGTAAGAACTTTCACCAGGG GAAACGGAGCCTCCCGGAATGGGTAAGAACTTTCACCAGGG < 41bp 0.436242755366584 0.755668697579127 NA NA prediction 0.511337395158253 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52829638 chr3:52829637 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_20340 0 0 1 0 2 ITIH3 chr3:52829639 5'GT 52829639 Upstream 3bp 18976 chr11 129246116 129246116 1 + G T THCA 129246117 + 129246097 129246137 41 AGCCCCTGCATTCCTGTACGGGTAAGACGCTCCGCTAGGGG AGCCCCTGCATTCCTGTACTGGTAAGACGCTCCGCTAGGGG < 41bp 0.600727413282642 0.85638628356015 NA NA prediction 0.511317740555015 Functional Gain - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129246117 chr11:129246116 synonymous SNV . 0 20 hm7G_associated_SNPs_20341 0 0 0 0 1 BARX2 chr11:129246117 5'GT 129246117 Upstream 2bp 18977 chr9 6984211 6984211 1 + G T HNSC 6984212 + 6984192 6984232 41 AAAGGCCTAAGGCTGATGAGGAAGAGGAAGTGTCAGATGAA AAAGGCCTAAGGCTGATGATGAAGAGGAAGTGTCAGATGAA < 41bp 0.44131217309903 0.755654735888669 NA NA prediction 0.511309471777338 Functional Gain - KDM4C ENSG00000107077 CDS Human protein_coding chr9:6984212 chr9:6984211 nonsynonymous SNV 0.161 1 20 hm7G_associated_SNPs_20344 0 0 1 0 1 KDM4C chr9:6984166 3'AG 6984166 Downstream 46bp 18978 chr3 157154782 157154782 1 + G T LIHC 157154783 + 157154763 157154803 41 CAGTGTTGGCCGAGAACTCGGATGATTATGATCTCATGTAT CAGTGTTGGCCGAGAACTCTGATGATTATGATCTCATGTAT < 41bp 0.591730282074821 0.847384481799499 NA NA prediction 0.511308399449355 Functional Gain - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157154783 chr3:157154782 synonymous SNV . 0 20 hm7G_associated_SNPs_20345 0 0 0 0 1 PTX3 chr3:157154852 5'GT 157154852 Upstream 71bp 18979 chr1 87200293 87200293 1 + G T COAD 87200294 + 87200274 87200314 41 TCTTACTTAAGTCTGAACAGGAATTAAGAATAACTCAAAGT TCTTACTTAAGTCTGAACATGAATTAAGAATAACTCAAAGT < 41bp 0.586035376053297 0.841681939815432 NA NA prediction 0.511293127524271 Functional Gain - SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87200294 chr1:87200293 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20346 0 0 1 0 2 SH3GLB1 chr1:87200285 3'AG 87200285 Downstream 9bp 18980 chr1 87200293 87200293 1 + G T COAD 87200294 + 87200274 87200314 41 TCTTACTTAAGTCTGAACAGGAATTAAGAATAACTCAAAGT TCTTACTTAAGTCTGAACATGAATTAAGAATAACTCAAAGT < 41bp 0.586035376053297 0.841681939815432 NA NA prediction 0.511293127524271 Functional Gain - SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87200294 chr1:87200293 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20346 0 0 1 0 2 SH3GLB1 chr1:87200374 5'GT 87200374 Upstream 82bp 18981 chr20 37128208 37128208 1 + G T GBM 37128209 + 37128189 37128229 41 AAACAGCCAAGGAGATGGTGGCTAACTGGAGGCATCACCCA AAACAGCCAAGGAGATGGTTGCTAACTGGAGGCATCACCCA < 41bp 0.623843401258369 0.879488322540416 NA NA prediction 0.511289842564092 Functional Gain - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37128209 chr20:37128208 synonymous SNV . 0 20 hm7G_associated_SNPs_20348 0 0 1 0 1 RALGAPB chr20:37128276 5'GT 37128276 Upstream 69bp 18982 chr1 228004910 228004910 1 + G T UCEC 228004911 + 228004891 228004931 41 TCTGTTCTCACCCCCACAGGGACAAGAATATCAAAATCTAT TCTGTTCTCACCCCCACAGTGACAAGAATATCAAAATCTAT < 41bp 0.436271333906209 0.755619992683923 NA NA prediction 0.511239985367847 Functional Gain - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228004911 chr1:228004910 nonsynonymous SNV 0.041 1 20 hm7G_associated_SNPs_20351 0 0 0 0 1 PRSS38 chr1:228004910 3'AG 228004910 Downstream 1bp 18983 chrX 133378857 133378857 1 + G T UCEC 133378858 + 133378838 133378878 41 CTAGAAGAAAACACTGGAAGGAGAATATGTTTACTCCTTTT CTAGAAGAAAACACTGGAATGAGAATATGTTTACTCCTTTT < 41bp 0.460212321372734 0.755615150848984 NA NA prediction 0.511230301697967 Functional Gain - CCDC160 ENSG00000203952 CDS Human protein_coding chrX:133378858 chrX:133378857 nonsynonymous SNV 0.952 0 20 hm7G_associated_SNPs_20353 0 0 0 0 1 CCDC160 chrX:133378807 3'AG 133378807 Downstream 51bp 18984 chr12 6966812 6966812 1 + G T UCEC 6966813 + 6966793 6966833 41 ACGTGTACTCATATGATGAGGATGACATGGTCCTGGACCCC ACGTGTACTCATATGATGATGATGACATGGTCCTGGACCCC < 41bp 0.627986981454646 0.883599254203359 NA NA prediction 0.511224545497425 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6966813 chr12:6966812 nonsynonymous SNV 0.940 4 20 hm7G_associated_SNPs_20354 0 0 1 0 2 USP5 chr12:6966793 3'AG 6966793 Downstream 20bp 18985 chr12 6966812 6966812 1 + G T UCEC 6966813 + 6966793 6966833 41 ACGTGTACTCATATGATGAGGATGACATGGTCCTGGACCCC ACGTGTACTCATATGATGATGATGACATGGTCCTGGACCCC < 41bp 0.627986981454646 0.883599254203359 NA NA prediction 0.511224545497425 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6966813 chr12:6966812 nonsynonymous SNV 0.940 4 20 hm7G_associated_SNPs_20354 0 0 1 0 2 USP5 chr12:6966887 5'GT 6966887 Upstream 76bp 18986 chr10 111892073 111892073 1 + G T UCEC 111892074 + 111892054 111892094 41 ATCCAACAGATGCTGAGCAGGAATTACTCTCAGATGACGCT ATCCAACAGATGCTGAGCATGAATTACTCTCAGATGACGCT < 41bp 0.440482722301593 0.755589902641825 NA NA prediction 0.51117980528365 Functional Gain - ADD3 ENSG00000148700 CDS Human protein_coding chr10:111892074 chr10:111892073 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20356 0 0 1 0 2 ADD3 chr10:111892063 3'AG 111892063 Downstream 11bp 18987 chr10 111892073 111892073 1 + G T UCEC 111892074 + 111892054 111892094 41 ATCCAACAGATGCTGAGCAGGAATTACTCTCAGATGACGCT ATCCAACAGATGCTGAGCATGAATTACTCTCAGATGACGCT < 41bp 0.440482722301593 0.755589902641825 NA NA prediction 0.51117980528365 Functional Gain - ADD3 ENSG00000148700 CDS Human protein_coding chr10:111892074 chr10:111892073 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20356 0 0 1 0 2 ADD3 chr10:111892158 5'GT 111892158 Upstream 86bp 18988 chr2 220473076 220473076 1 + G T CESC 220473077 + 220473057 220473097 41 GGAAGGAGGAGAAGGAGGAGGGGGAGATGGTGGAACAGGGA GGAAGGAGGAGAAGGAGGATGGGGAGATGGTGGAACAGGGA < 41bp 0.61898166434471 0.874561669184763 NA NA prediction 0.511160009680105 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220473077 chr2:220473076 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_20357 0 0 0 0 1 STK11IP chr2:220473152 5'GT 220473152 Upstream 77bp 18989 chr5 126667056 126667056 1 + G T LUAD 126667057 + 126667037 126667077 41 TGTTTATTGTTATGCCACTGGATTGGGACAGCATCACCTCT TGTTTATTGTTATGCCACTTGATTGGGACAGCATCACCTCT < 41bp 0.428979493935888 0.755567410277681 NA NA prediction 0.511134820555361 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126667057 chr5:126667056 nonsynonymous SNV 0.112 1 20 hm7G_associated_SNPs_20359 0 0 0 0 2 MEGF10 chr5:126666983 3'AG 126666983 Downstream 74bp 18990 chr5 126667056 126667056 1 + G T LUAD 126667057 + 126667037 126667077 41 TGTTTATTGTTATGCCACTGGATTGGGACAGCATCACCTCT TGTTTATTGTTATGCCACTTGATTGGGACAGCATCACCTCT < 41bp 0.428979493935888 0.755567410277681 NA NA prediction 0.511134820555361 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126667057 chr5:126667056 nonsynonymous SNV 0.112 1 20 hm7G_associated_SNPs_20359 0 0 0 0 2 MEGF10 chr5:126667116 5'GT 126667116 Upstream 61bp 18991 chr7 27833974 27833974 1 + G T LIHC 27833975 + 27833955 27833995 41 ATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGAAT ATGTCTTCACAAAGAAAACTGGGAATCAGCAGAAAGTGAAT < 41bp 0.602296661257946 0.85783460174189 NA NA prediction 0.511075880967888 Functional Gain - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833975 chr7:27833974 synonymous SNV . 0 20 hm7G_associated_SNPs_20361 0 0 1 0 2 TAX1BP1 chr7:27833942 3'AG 27833942 Downstream 33bp 18992 chr7 27833974 27833974 1 + G T LIHC 27833975 + 27833955 27833995 41 ATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGAAT ATGTCTTCACAAAGAAAACTGGGAATCAGCAGAAAGTGAAT < 41bp 0.602296661257946 0.85783460174189 NA NA prediction 0.511075880967888 Functional Gain - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27833975 chr7:27833974 synonymous SNV . 0 20 hm7G_associated_SNPs_20361 0 0 1 0 2 TAX1BP1 chr7:27834065 5'GT 27834065 Upstream 92bp 18993 chr14 21464718 21464718 1 + G T KIRP 21464719 + 21464699 21464739 41 AGGAAGAAAAGTTCTCTATGGTGATCCTTGCTCGGGGGTCT AGGAAGAAAAGTTCTCTATTGTGATCCTTGCTCGGGGGTCT < 41bp 0.437542005445345 0.755509728074074 NA NA prediction 0.511019456148148 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21464719 chr14:21464718 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_20363 0 0 1 0 1 METTL17 chr14:21464686 3'AG 21464686 Downstream 33bp 18994 chr19 7524831 7524831 1 + G T UCEC 7524832 + 7524812 7524852 41 CCTTCAGCCTGCCCGAAGAGGAAAGGAAGGTGGTCGAGGCC CCTTCAGCCTGCCCGAAGATGAAAGGAAGGTGGTCGAGGCC < 41bp 0.630197455571503 0.885707154699785 NA NA prediction 0.511019398256565 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7524832 chr19:7524831 nonsynonymous SNV 0.031 0 20 hm7G_associated_SNPs_20364 0 0 1 0 2 ARHGEF18 chr19:7524789 3'AG 7524789 Downstream 43bp 18995 chr19 7524831 7524831 1 + G T UCEC 7524832 + 7524812 7524852 41 CCTTCAGCCTGCCCGAAGAGGAAAGGAAGGTGGTCGAGGCC CCTTCAGCCTGCCCGAAGATGAAAGGAAGGTGGTCGAGGCC < 41bp 0.630197455571503 0.885707154699785 NA NA prediction 0.511019398256565 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7524832 chr19:7524831 nonsynonymous SNV 0.031 0 20 hm7G_associated_SNPs_20364 0 0 1 0 2 ARHGEF18 chr19:7524880 5'GT 7524880 Upstream 50bp 18996 chr7 92905554 92905554 1 + G T LUSC 92905555 + 92905535 92905575 41 AAGTTGTTCTTGGTTATGTGGAACTATGTGCAGGAAACACA AAGTTGTTCTTGGTTATGTTGAACTATGTGCAGGAAACACA < 41bp 0.429670038327454 0.755509177489693 NA NA prediction 0.511018354979386 Functional Gain - VPS50 ENSG00000004766 CDS Human protein_coding chr7:92905555 chr7:92905554 synonymous SNV . 0 20 hm7G_associated_SNPs_20365 0 0 1 0 2 VPS50 chr7:92905477 3'AG 92905477 Downstream 78bp 18997 chr7 92905554 92905554 1 + G T LUSC 92905555 + 92905535 92905575 41 AAGTTGTTCTTGGTTATGTGGAACTATGTGCAGGAAACACA AAGTTGTTCTTGGTTATGTTGAACTATGTGCAGGAAACACA < 41bp 0.429670038327454 0.755509177489693 NA NA prediction 0.511018354979386 Functional Gain - VPS50 ENSG00000004766 CDS Human protein_coding chr7:92905555 chr7:92905554 synonymous SNV . 0 20 hm7G_associated_SNPs_20365 0 0 1 0 2 VPS50 chr7:92905617 5'GT 92905617 Upstream 64bp 18998 chrX 134989171 134989171 1 + G T UCEC 134989172 + 134989152 134989192 41 CTTGTCAACTGCTTCAACAGGGCTTATTAATGTGGCAGGAG CTTGTCAACTGCTTCAACATGGCTTATTAATGTGGCAGGAG < 41bp 0.431228117602414 0.755509129037951 NA NA prediction 0.511018258075901 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134989172 chrX:134989171 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_20366 0 0 1 0 2 SAGE1 chrX:134989085 3'AG 134989085 Downstream 87bp 18999 chrX 134989171 134989171 1 + G T UCEC 134989172 + 134989152 134989192 41 CTTGTCAACTGCTTCAACAGGGCTTATTAATGTGGCAGGAG CTTGTCAACTGCTTCAACATGGCTTATTAATGTGGCAGGAG < 41bp 0.431228117602414 0.755509129037951 NA NA prediction 0.511018258075901 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134989172 chrX:134989171 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_20366 0 0 1 0 2 SAGE1 chrX:134989225 5'GT 134989225 Upstream 55bp 19000 chr1 179523667 179523667 1 - C A UCEC 179523666 - 179523646 179523686 41 CTGAATTCTTCTTTCCACAGGTTGCCTTGGATTCAGTGACC CTGAATTCTTCTTTCCACATGTTGCCTTGGATTCAGTGACC < 41bp 0.442335592712344 0.755498356210341 NA NA prediction 0.510996712420681 Functional Gain - NPHS2 ENSG00000116218 splicing Human protein_coding chr1:179523666 chr1:179523667 . 0.998 0 20 hm7G_associated_SNPs_20370 0 0 0 0 1 NPHS2 chr1:179523611 5'GT 179523611 Upstream 57bp 19001 chr20 31695558 31695558 1 + G T LUAD 31695559 + 31695539 31695579 41 TTATTTTACAGCTGTGCTGGGTTCTGGCGTCCCTCTCCCCA TTATTTTACAGCTGTGCTGTGTTCTGGCGTCCCTCTCCCCA < 41bp 0.601869635664884 0.857346873873391 NA NA prediction 0.510954476417013 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31695559 chr20:31695558 nonsynonymous SNV 0.586 4 20 hm7G_associated_SNPs_20373 0 0 0 0 2 BPIFB4 chr20:31695550 3'AG 31695550 Downstream 9bp 19002 chr20 31695558 31695558 1 + G T LUAD 31695559 + 31695539 31695579 41 TTATTTTACAGCTGTGCTGGGTTCTGGCGTCCCTCTCCCCA TTATTTTACAGCTGTGCTGTGTTCTGGCGTCCCTCTCCCCA < 41bp 0.601869635664884 0.857346873873391 NA NA prediction 0.510954476417013 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31695559 chr20:31695558 nonsynonymous SNV 0.586 4 20 hm7G_associated_SNPs_20373 0 0 0 0 2 BPIFB4 chr20:31695626 5'GT 31695626 Upstream 69bp 19003 chr3 138091773 138091773 1 + G T LUSC 138091774 + 138091754 138091794 41 ACCTCCCCACATACAAGCTGGTGGTGGTGGGGGATGGGGGT ACCTCCCCACATACAAGCTTGTGGTGGTGGGGGATGGGGGT < 41bp 0.614683917137006 0.8701486223661 NA NA prediction 0.510929410458189 Functional Gain - MRAS ENSG00000158186 CDS Human protein_coding chr3:138091774 chr3:138091773 synonymous SNV . 0 20 hm7G_associated_SNPs_20375 0 0 0 0 1 MRAS chr3:138091708 3'AG 138091708 Downstream 66bp 19004 chr3 186358420 186358420 1 + G T COAD 186358421 + 186358401 186358441 41 ATATTAACAAAGACAGAAAGGATGGCTATGTGCTGAGACTC ATATTAACAAAGACAGAAATGATGGCTATGTGCTGAGACTC < 41bp 0.616680447396403 0.872144618297337 NA NA prediction 0.510928341801868 Functional Gain - FETUB ENSG00000090512 CDS Human protein_coding chr3:186358421 chr3:186358420 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_20376 0 0 0 0 1 FETUB chr3:186358478 5'GT 186358478 Upstream 59bp 19005 chr14 95088804 95088804 1 + G T LUAD 95088805 + 95088785 95088825 41 ACCTGTCAGGGATCACAGGGGCCAGGAACCTAGCAGTCTCC ACCTGTCAGGGATCACAGGTGCCAGGAACCTAGCAGTCTCC < 41bp 0.427730896857887 0.755442498867853 NA NA prediction 0.510884997735707 Functional Gain - SERPINA3 ENSG00000196136 CDS Human protein_coding chr14:95088805 chr14:95088804 synonymous SNV . 0 20 hm7G_associated_SNPs_20380 0 0 1 0 1 SERPINA3 chr14:95088828 5'GT 95088828 Upstream 25bp 19006 chr16 19562548 19562548 1 + G T LUAD 19562549 + 19562529 19562569 41 GGAAAAATCCAAAGAAAGCGGCCAAATGTTGCGACAATTTA GGAAAAATCCAAAGAAAGCTGCCAAATGTTGCGACAATTTA < 41bp 0.572231302623962 0.827665200433803 NA NA prediction 0.510867795619683 Functional Gain - CCP110 ENSG00000103540 CDS Human protein_coding chr16:19562549 chr16:19562548 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20381 0 0 1 0 1 CCP110 chr16:19562518 3'AG 19562518 Downstream 31bp 19007 chr2 207804357 207804357 1 + G T LUAD 207804358 + 207804338 207804378 41 TGAAACCCTTTATCTTTTGGGGATGCTGGTTCCTGGAGGGC TGAAACCCTTTATCTTTTGTGGATGCTGGTTCCTGGAGGGC < 41bp 0.59979100196962 0.855213737798615 NA NA prediction 0.510845471657991 Functional Gain - CPO ENSG00000144410 CDS Human protein_coding chr2:207804358 chr2:207804357 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_20383 0 0 1 0 1 CPO chr2:207804391 5'GT 207804391 Upstream 35bp 19008 chr1 2421246 2421246 1 + G T UCEC 2421247 + 2421227 2421267 41 AGGATGCGGAGGAAGGCGAGGTGTCTGATGAGGACAGTGCT AGGATGCGGAGGAAGGCGATGTGTCTGATGAGGACAGTGCT < 41bp 0.615509342576889 0.870931646407504 NA NA prediction 0.510844607661229 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421247 chr1:2421246 nonsynonymous SNV 0.952 0 20 hm7G_associated_SNPs_20384 0 0 0 0 2 PLCH2 chr1:2421199 3'AG 2421199 Downstream 48bp 19009 chr1 2421246 2421246 1 + G T UCEC 2421247 + 2421227 2421267 41 AGGATGCGGAGGAAGGCGAGGTGTCTGATGAGGACAGTGCT AGGATGCGGAGGAAGGCGATGTGTCTGATGAGGACAGTGCT < 41bp 0.615509342576889 0.870931646407504 NA NA prediction 0.510844607661229 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2421247 chr1:2421246 nonsynonymous SNV 0.952 0 20 hm7G_associated_SNPs_20384 0 0 0 0 2 PLCH2 chr1:2421306 5'GT 2421306 Upstream 61bp 19010 chr17 12853032 12853032 1 + G T ACC 12853033 + 12853013 12853053 41 TTTGAACTCTATGATGAGTGGATCCAGGCTTCCAAGTGAGT TTTGAACTCTATGATGAGTTGATCCAGGCTTCCAAGTGAGT < 41bp 0.420092146207412 0.755410045140418 NA NA prediction 0.510820090280836 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12853033 chr17:12853032 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20385 0 0 0 0 2 ARHGAP44 chr17:12852966 3'AG 12852966 Downstream 67bp 19011 chr17 12853032 12853032 1 + G T ACC 12853033 + 12853013 12853053 41 TTTGAACTCTATGATGAGTGGATCCAGGCTTCCAAGTGAGT TTTGAACTCTATGATGAGTTGATCCAGGCTTCCAAGTGAGT < 41bp 0.420092146207412 0.755410045140418 NA NA prediction 0.510820090280836 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12853033 chr17:12853032 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20385 0 0 0 0 2 ARHGAP44 chr17:12853047 5'GT 12853047 Upstream 16bp 19012 chr5 177547263 177547263 1 + G T PAAD 177547264 + 177547244 177547284 41 AAGTCTGGCGTCCCACAAAGGCCAGAAGCTGTGGCGCAGCA AAGTCTGGCGTCCCACAAATGCCAGAAGCTGTGGCGCAGCA < 41bp 0.614073047492317 0.869466072694824 NA NA prediction 0.510786050405014 Functional Gain - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177547264 chr5:177547263 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_20387 0 0 0 0 1 N4BP3 chr5:177547179 3'AG 177547179 Downstream 85bp 19013 chr10 96053344 96053344 1 + G T LUSC 96053345 + 96053325 96053365 41 CCATTTTTGGCAACAATCCGGGCAGAATGAGCCCAGGGGAG CCATTTTTGGCAACAATCCTGGCAGAATGAGCCCAGGGGAG < 41bp 0.431020466254484 0.755388012522358 NA NA prediction 0.510776025044716 Functional Gain - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:96053345 chr10:96053344 synonymous SNV . 0 20 hm7G_associated_SNPs_20388 0 0 0 0 2 PLCE1 chr10:96053265 3'AG 96053265 Downstream 80bp 19014 chr10 96053344 96053344 1 + G T LUSC 96053345 + 96053325 96053365 41 CCATTTTTGGCAACAATCCGGGCAGAATGAGCCCAGGGGAG CCATTTTTGGCAACAATCCTGGCAGAATGAGCCCAGGGGAG < 41bp 0.431020466254484 0.755388012522358 NA NA prediction 0.510776025044716 Functional Gain - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:96053345 chr10:96053344 synonymous SNV . 0 20 hm7G_associated_SNPs_20388 0 0 0 0 2 PLCE1 chr10:96053396 5'GT 96053396 Upstream 53bp 19015 chr3 108096114 108096114 1 + G T UCEC 108096115 + 108096095 108096135 41 TTGCTTCTAGCCTCTTTCAGGAAAAGTATAGGAAATGAGAG TTGCTTCTAGCCTCTTTCATGAAAAGTATAGGAAATGAGAG < 41bp 0.526202602074789 0.7815814586577 NA NA prediction 0.510757713165822 Functional Gain - HHLA2 ENSG00000114455 CDS Human protein_coding chr3:108096115 chr3:108096114 stopgain 0.003 0 20 hm7G_associated_SNPs_20389 0 0 0 0 1 HHLA2 chr3:108096105 3'AG 108096105 Downstream 10bp 19016 chrX 17771387 17771387 1 + G T THCA 17771388 + 17771368 17771408 41 CTCTCCATAGGAAATTGACGGGAAGGCTCTGCTCCTACTCA CTCTCCATAGGAAATTGACTGGAAGGCTCTGCTCCTACTCA < 41bp 0.582680729941181 0.838036561613995 NA NA prediction 0.510711663345628 Functional Gain - SCML1 ENSG00000047634 CDS Human protein_coding chrX:17771388 chrX:17771387 nonsynonymous SNV 0.120 3 20 hm7G_associated_SNPs_20391 0 0 1 0 1 SCML1 chrX:17771378 3'AG 17771378 Downstream 10bp 19017 chr15 42855965 42855965 1 + G T LIHC 42855966 + 42855946 42855986 41 GATATATGGTACATTTGCTGGAGTTGGCTGTGACTTTCATT GATATATGGTACATTTGCTTGAGTTGGCTGTGACTTTCATT < 41bp 0.432700125979787 0.755349434661517 NA NA prediction 0.510698869323033 Functional Gain - HAUS2 ENSG00000137814 CDS Human protein_coding chr15:42855966 chr15:42855965 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_20392 0 0 1 0 2 HAUS2 chr15:42855947 3'AG 42855947 Downstream 19bp 19018 chr15 42855965 42855965 1 + G T LIHC 42855966 + 42855946 42855986 41 GATATATGGTACATTTGCTGGAGTTGGCTGTGACTTTCATT GATATATGGTACATTTGCTTGAGTTGGCTGTGACTTTCATT < 41bp 0.432700125979787 0.755349434661517 NA NA prediction 0.510698869323033 Functional Gain - HAUS2 ENSG00000137814 CDS Human protein_coding chr15:42855966 chr15:42855965 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_20392 0 0 1 0 2 HAUS2 chr15:42856055 5'GT 42856055 Upstream 91bp 19019 chrX 151820175 151820175 1 + G T COAD 151820176 + 151820156 151820196 41 GGACCTCGGCGCCAGCCTAGGCGACACAGGAGACCCCGAAG GGACCTCGGCGCCAGCCTATGCGACACAGGAGACCCCGAAG < 41bp 0.622757259544016 0.878091358242306 NA NA prediction 0.51066819739658 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151820176 chrX:151820175 nonsynonymous SNV 0.018 3 20 hm7G_associated_SNPs_20394 0 0 0 0 1 GABRQ chrX:151820245 5'GT 151820245 Upstream 71bp 19020 chrX 149787547 149787547 1 + G T OV 149787548 + 149787528 149787568 41 GTTCGCTTTGAAACAGGAAGGCCACAGCAGAAGAGATATGT GTTCGCTTTGAAACAGGAATGCCACAGCAGAAGAGATATGT < 41bp 0.606807223828573 0.862132807923141 NA NA prediction 0.510651168189135 Functional Gain - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149787548 chrX:149787547 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20396 0 0 1 0 2 MTM1 chrX:149787511 3'AG 149787511 Downstream 37bp 19021 chrX 149787547 149787547 1 + G T OV 149787548 + 149787528 149787568 41 GTTCGCTTTGAAACAGGAAGGCCACAGCAGAAGAGATATGT GTTCGCTTTGAAACAGGAATGCCACAGCAGAAGAGATATGT < 41bp 0.606807223828573 0.862132807923141 NA NA prediction 0.510651168189135 Functional Gain - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149787548 chrX:149787547 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20396 0 0 1 0 2 MTM1 chrX:149787612 5'GT 149787612 Upstream 66bp 19022 chr19 4247149 4247149 1 + G T BLCA 4247150 + 4247130 4247170 41 ATCAGAAGGCAAAGATGTCGGAGCGAAAAGTATTAAACGTA ATCAGAAGGCAAAGATGTCTGAGCGAAAAGTATTAAACGTA < 41bp 0.594935085972369 0.850245356913147 NA NA prediction 0.510620541881556 Functional Gain - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4247150 chr19:4247149 synonymous SNV . 0 20 hm7G_associated_SNPs_20399 0 0 1 0 1 CCDC94 chr19:4247167 5'GT 4247167 Upstream 19bp 19023 chr4 83828947 83828947 1 + G T UCEC 83828948 + 83828928 83828968 41 ATTTTAACAGATTTTAAGTGGGAGTTATATAATTGGAGAGA ATTTTAACAGATTTTAAGTTGGAGTTATATAATTGGAGAGA < 41bp 0.583072503048144 0.838370374944771 NA NA prediction 0.510595743793254 Functional Gain - THAP9 ENSG00000168152 CDS Human protein_coding chr4:83828948 chr4:83828947 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20401 0 0 1 0 1 THAP9 chr4:83828938 3'AG 83828938 Downstream 10bp 19024 chr2 69409643 69409643 1 + G T LUSC 69409644 + 69409624 69409664 41 GGTTCGTTGGGGAGAAAAGGGCTCCACAGAAGAAGGTGCTA GGTTCGTTGGGGAGAAAAGTGCTCCACAGAAGAAGGTGCTA < 41bp 0.609359581007287 0.864644407284044 NA NA prediction 0.510569652553513 Functional Gain - ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69409644 chr2:69409643 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20402 0 0 1 0 1 ANTXR1 chr2:69409625 3'AG 69409625 Downstream 19bp 19025 chr3 25832716 25832716 1 + G T UCEC 25832717 + 25832697 25832737 41 TTGGGATCGTCTTATCGGAGGAGAGAGTGGAATTGTTTCAC TTGGGATCGTCTTATCGGATGAGAGAGTGGAATTGTTTCAC < 41bp 0.605911058671398 0.861194136056543 NA NA prediction 0.51056615477029 Functional Gain - OXSM ENSG00000151093 CDS Human protein_coding chr3:25832717 chr3:25832716 stopgain 0.943 1 20 hm7G_associated_SNPs_20403 0 0 0 0 1 OXSM chr3:25832806 5'GT 25832806 Upstream 91bp 19026 chr2 150071067 150071067 1 + G T UCEC 150071068 + 150071048 150071088 41 TTTTTGTAACAGGAGTGTAGGTCTTGCTGTGAAGGAATGAT TTTTTGTAACAGGAGTGTATGTCTTGCTGTGAAGGAATGAT < 41bp 0.58264345501263 0.837923849342206 NA NA prediction 0.51056078865915 Functional Gain - LYPD6B ENSG00000150556 CDS Human protein_coding chr2:150071068 chr2:150071067 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20404 0 0 1 0 1 LYPD6B chr2:150071060 3'AG 150071060 Downstream 8bp 19027 chr17 21205544 21205544 1 + G T UCEC 21205545 + 21205525 21205565 41 AAAACATGACAATTCCAGAGGACATCCTTGGGGAGATTGCT AAAACATGACAATTCCAGATGACATCCTTGGGGAGATTGCT < 41bp 0.625594149838351 0.880869425566943 NA NA prediction 0.510550551457184 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205545 chr17:21205544 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_20405 0 0 1 0 2 MAP2K3 chr17:21205455 3'AG 21205455 Downstream 90bp 19028 chr17 21205544 21205544 1 + G T UCEC 21205545 + 21205525 21205565 41 AAAACATGACAATTCCAGAGGACATCCTTGGGGAGATTGCT AAAACATGACAATTCCAGATGACATCCTTGGGGAGATTGCT < 41bp 0.625594149838351 0.880869425566943 NA NA prediction 0.510550551457184 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205545 chr17:21205544 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_20405 0 0 1 0 2 MAP2K3 chr17:21205571 5'GT 21205571 Upstream 28bp 19029 chr20 37535630 37535630 1 + G T LUAD 37535631 + 37535611 37535651 41 CTGTGTTTCAGATGCAGATGGCAGAGCTATTGGTGTCCCAT CTGTGTTTCAGATGCAGATTGCAGAGCTATTGGTGTCCCAT < 41bp 0.625099366037485 0.880326666408519 NA NA prediction 0.510454600742068 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37535631 chr20:37535630 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20409 0 0 0 0 2 PPP1R16B chr20:37535622 3'AG 37535622 Downstream 9bp 19030 chr20 37535630 37535630 1 + G T LUAD 37535631 + 37535611 37535651 41 CTGTGTTTCAGATGCAGATGGCAGAGCTATTGGTGTCCCAT CTGTGTTTCAGATGCAGATTGCAGAGCTATTGGTGTCCCAT < 41bp 0.625099366037485 0.880326666408519 NA NA prediction 0.510454600742068 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37535631 chr20:37535630 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20409 0 0 0 0 2 PPP1R16B chr20:37535697 5'GT 37535697 Upstream 68bp 19031 chrX 150909307 150909307 1 + G T rs35350051 150909308 + 150909288 150909328 41 TTGGACCCAGCTGGGGATTGGTACTACTGCTGGCTATTTGT TTGGACCCAGCTGGGGATTTGTACTACTGCTGGCTATTTGT < 41bp 0.425719816961546 0.755219309583848 NA NA prediction 0.510438619167696 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150909308 chrX:150909307 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_20410 0 0 0 0 2 CNGA2 chrX:150909266 3'AG 150909266 Downstream 42bp 19032 chrX 150909307 150909307 1 + G T rs35350051 150909308 + 150909288 150909328 41 TTGGACCCAGCTGGGGATTGGTACTACTGCTGGCTATTTGT TTGGACCCAGCTGGGGATTTGTACTACTGCTGGCTATTTGT < 41bp 0.425719816961546 0.755219309583848 NA NA prediction 0.510438619167696 Functional Gain - CNGA2 ENSG00000183862 CDS Human protein_coding chrX:150909308 chrX:150909307 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_20410 0 0 0 0 2 CNGA2 chrX:150909373 5'GT 150909373 Upstream 67bp 19033 chr1 63881611 63881611 1 + G T UCEC 63881612 + 63881592 63881632 41 ACTTCAGCCCTCTTCCAAAGGATTCAAATTTACACTGGTAA ACTTCAGCCCTCTTCCAAATGATTCAAATTTACACTGGTAA < 41bp 0.447772015988996 0.755217211443677 NA NA prediction 0.510434422887354 Functional Gain - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63881612 chr1:63881611 stopgain 0.885 0 20 hm7G_associated_SNPs_20411 0 0 1 2 2 ALG6 chr1:63881544 3'AG 63881544 Downstream 68bp 19034 chr1 63881611 63881611 1 + G T UCEC 63881612 + 63881592 63881632 41 ACTTCAGCCCTCTTCCAAAGGATTCAAATTTACACTGGTAA ACTTCAGCCCTCTTCCAAATGATTCAAATTTACACTGGTAA < 41bp 0.447772015988996 0.755217211443677 NA NA prediction 0.510434422887354 Functional Gain - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63881612 chr1:63881611 stopgain 0.885 0 20 hm7G_associated_SNPs_20411 0 0 1 2 2 ALG6 chr1:63881628 5'GT 63881628 Upstream 18bp 19035 chr19 34981313 34981313 1 + G T UCEC 34981314 + 34981294 34981334 41 GTGTGGGCTTGGCATCTACGGAGCCCAGCAGGCGTGCCAGG GTGTGGGCTTGGCATCTACTGAGCCCAGCAGGCGTGCCAGG < 41bp 0.625325646998592 0.880513017924646 NA NA prediction 0.510374741852106 Functional Gain - WTIP ENSG00000142279 CDS Human protein_coding chr19:34981314 chr19:34981313 stopgain 0.154 1 20 hm7G_associated_SNPs_20413 0 0 0 0 2 WTIP chr19:34981281 3'AG 34981281 Downstream 33bp 19036 chr19 34981313 34981313 1 + G T UCEC 34981314 + 34981294 34981334 41 GTGTGGGCTTGGCATCTACGGAGCCCAGCAGGCGTGCCAGG GTGTGGGCTTGGCATCTACTGAGCCCAGCAGGCGTGCCAGG < 41bp 0.625325646998592 0.880513017924646 NA NA prediction 0.510374741852106 Functional Gain - WTIP ENSG00000142279 CDS Human protein_coding chr19:34981314 chr19:34981313 stopgain 0.154 1 20 hm7G_associated_SNPs_20413 0 0 0 0 2 WTIP chr19:34981382 5'GT 34981382 Upstream 70bp 19037 chr16 3108273 3108273 1 + G T UCEC 3108274 + 3108254 3108294 41 GGGAGGGGCTGCCCGCCCAGGTGAGGGTGGTGCAGGCCGCC GGGAGGGGCTGCCCGCCCATGTGAGGGTGGTGCAGGCCGCC < 41bp 0.41254541648166 0.755182344922996 NA NA prediction 0.510364689845992 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3108274 chr16:3108273 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_20415 0 0 0 0 2 MMP25 chr16:3108182 3'AG 3108182 Downstream 92bp 19038 chr16 3108273 3108273 1 + G T UCEC 3108274 + 3108254 3108294 41 GGGAGGGGCTGCCCGCCCAGGTGAGGGTGGTGCAGGCCGCC GGGAGGGGCTGCCCGCCCATGTGAGGGTGGTGCAGGCCGCC < 41bp 0.41254541648166 0.755182344922996 NA NA prediction 0.510364689845992 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3108274 chr16:3108273 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_20415 0 0 0 0 2 MMP25 chr16:3108334 5'GT 3108334 Upstream 62bp 19039 chrX 21997070 21997070 1 + G T UCEC 21997071 + 21997051 21997091 41 TGTCTTAGACAATCTTAAAGGAGACTGCTATCAGGTAATTG TGTCTTAGACAATCTTAAATGAGACTGCTATCAGGTAATTG < 41bp 0.442495825709846 0.755180198891935 NA NA prediction 0.51036039778387 Functional Gain - SMS ENSG00000102172 CDS Human protein_coding chrX:21997071 chrX:21997070 stopgain 1.000 1 20 hm7G_associated_SNPs_20416 0 0 1 0 1 SMS chrX:21997084 5'GT 21997084 Upstream 15bp 19040 chr14 104142037 104142037 1 + G T UCEC 104142038 + 104142018 104142058 41 TAATTTAGGGAAAGCAAAAGGATGGGACATCTTTTGGAGAG TAATTTAGGGAAAGCAAAATGATGGGACATCTTTTGGAGAG < 41bp 0.59238144529412 0.847555405745449 NA NA prediction 0.510347920902658 Functional Gain - KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104142038 chr14:104142037 nonsynonymous SNV 0.972 1 20 hm7G_associated_SNPs_20418 0 0 1 0 1 KLC1 chr14:104142093 5'GT 104142093 Upstream 57bp 19041 chr2 89049502 89049502 1 + G T STAD 89049503 + 89049483 89049523 41 TCCTTTGTCCTGCAGGTGTGGTGGACACAGGCCTATTCATC TCCTTTGTCCTGCAGGTGTTGTGGACACAGGCCTATTCATC < 41bp 0.583526216587653 0.838689791787679 NA NA prediction 0.510327150400052 Functional Gain - RPIA ENSG00000153574 CDS Human protein_coding chr2:89049503 chr2:89049502 synonymous SNV . 0 20 hm7G_associated_SNPs_20419 0 0 1 0 1 RPIA chr2:89049498 3'AG 89049498 Downstream 5bp 19042 chr19 36145572 36145572 1 + G T LUSC 36145573 + 36145553 36145593 41 TCCCTCTGCCCCACATCCTGGGTATGTGCCTCCTGCCAGGG TCCCTCTGCCCCACATCCTTGGTATGTGCCTCCTGCCAGGG < 41bp 0.618189161827689 0.873333812288326 NA NA prediction 0.510289300921275 Functional Gain - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36145573 chr19:36145572 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_20420 0 0 1 0 2 COX6B1 chr19:36145473 3'AG 36145473 Downstream 100bp 19043 chr19 36145572 36145572 1 + G T LUSC 36145573 + 36145553 36145593 41 TCCCTCTGCCCCACATCCTGGGTATGTGCCTCCTGCCAGGG TCCCTCTGCCCCACATCCTTGGTATGTGCCTCCTGCCAGGG < 41bp 0.618189161827689 0.873333812288326 NA NA prediction 0.510289300921275 Functional Gain - COX6B1 ENSG00000126267 CDS Human protein_coding chr19:36145573 chr19:36145572 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_20420 0 0 1 0 2 COX6B1 chr19:36145573 5'GT 36145573 Upstream 2bp 19044 chr11 6629384 6629384 1 + G T COAD 6629385 + 6629365 6629405 41 TCAATGTAATGAACCGTGGGGATGACACCCCCCTGCATCTG TCAATGTAATGAACCGTGGTGATGACACCCCCCTGCATCTG < 41bp 0.618694410870259 0.873832072208445 NA NA prediction 0.510275322676372 Functional Gain - ILK ENSG00000166333 CDS Human protein_coding chr11:6629385 chr11:6629384 synonymous SNV . 0 20 hm7G_associated_SNPs_20421 0 0 1 0 1 ILK chr11:6629441 5'GT 6629441 Upstream 58bp 19045 chr3 53217201 53217201 1 + G T LUAD 53217202 + 53217182 53217222 41 GCAGATGCACTGGCACCGCGGCCAACAGCCGGGACACTATA GCAGATGCACTGGCACCGCTGCCAACAGCCGGGACACTATA < 41bp 0.63059868015524 0.88573150346302 NA NA prediction 0.510265646615559 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53217202 chr3:53217201 synonymous SNV . 0 20 hm7G_associated_SNPs_20422 0 0 1 0 2 PRKCD chr3:53217137 3'AG 53217137 Downstream 65bp 19046 chr3 53217201 53217201 1 + G T LUAD 53217202 + 53217182 53217222 41 GCAGATGCACTGGCACCGCGGCCAACAGCCGGGACACTATA GCAGATGCACTGGCACCGCTGCCAACAGCCGGGACACTATA < 41bp 0.63059868015524 0.88573150346302 NA NA prediction 0.510265646615559 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53217202 chr3:53217201 synonymous SNV . 0 20 hm7G_associated_SNPs_20422 0 0 1 0 2 PRKCD chr3:53217222 5'GT 53217222 Upstream 22bp 19047 chr1 212788387 212788387 1 + G T STAD 212788388 + 212788368 212788408 41 TGCTTCAACACCCAGGCCAGGTCTCTGCCTCGGAAGTGAGT TGCTTCAACACCCAGGCCATGTCTCTGCCTCGGAAGTGAGT < 41bp 0.607299964182414 0.862426155428296 NA NA prediction 0.510252382491765 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788388 chr1:212788387 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20423 0 0 1 1 2 ATF3 chr1:212788383 3'AG 212788383 Downstream 5bp 19048 chr1 212788387 212788387 1 + G T STAD 212788388 + 212788368 212788408 41 TGCTTCAACACCCAGGCCAGGTCTCTGCCTCGGAAGTGAGT TGCTTCAACACCCAGGCCATGTCTCTGCCTCGGAAGTGAGT < 41bp 0.607299964182414 0.862426155428296 NA NA prediction 0.510252382491765 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788388 chr1:212788387 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20423 0 0 1 1 2 ATF3 chr1:212788402 5'GT 212788402 Upstream 16bp 19049 chr1 156038071 156038071 1 + G T LUSC 156038072 + 156038052 156038092 41 CCCACCCAGGTACTATCGTGGTGCAGTGGGGGCCCTCCTGG CCCACCCAGGTACTATCGTTGTGCAGTGGGGGCCCTCCTGG < 41bp 0.615391707617293 0.87051242449981 NA NA prediction 0.510241433765034 Functional Gain - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156038072 chr1:156038071 nonsynonymous SNV 0.972 5 20 hm7G_associated_SNPs_20424 0 0 0 0 1 RAB25 chr1:156038061 3'AG 156038061 Downstream 11bp 19050 chr12 64890798 64890798 1 + G T UCEC 64890799 + 64890779 64890819 41 AATGTGTTAAAAAGTATGAGGCATTTTTGAATAAGTCAGAA AATGTGTTAAAAAGTATGATGCATTTTTGAATAAGTCAGAA < 41bp 0.596243199766199 0.851345865024912 NA NA prediction 0.510205330517425 Functional Gain - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64890799 chr12:64890798 nonsynonymous SNV 0.161 0 20 hm7G_associated_SNPs_20426 0 0 1 0 2 TBK1 chr12:64890729 3'AG 64890729 Downstream 70bp 19051 chr12 64890798 64890798 1 + G T UCEC 64890799 + 64890779 64890819 41 AATGTGTTAAAAAGTATGAGGCATTTTTGAATAAGTCAGAA AATGTGTTAAAAAGTATGATGCATTTTTGAATAAGTCAGAA < 41bp 0.596243199766199 0.851345865024912 NA NA prediction 0.510205330517425 Functional Gain - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64890799 chr12:64890798 nonsynonymous SNV 0.161 0 20 hm7G_associated_SNPs_20426 0 0 1 0 2 TBK1 chr12:64890830 5'GT 64890830 Upstream 33bp 19052 chr5 109091072 109091072 1 + G T LUAD 109091073 + 109091053 109091093 41 AAATTGTGACAGGTGGCTGGGTTATGCCTGATGAAGCTACT AAATTGTGACAGGTGGCTGTGTTATGCCTGATGAAGCTACT < 41bp 0.431512130035819 0.755102231844477 NA NA prediction 0.510204463688953 Functional Gain - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109091073 chr5:109091072 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20427 0 0 1 0 2 MAN2A1 chr5:109091030 3'AG 109091030 Downstream 43bp 19053 chr5 109091072 109091072 1 + G T LUAD 109091073 + 109091053 109091093 41 AAATTGTGACAGGTGGCTGGGTTATGCCTGATGAAGCTACT AAATTGTGACAGGTGGCTGTGTTATGCCTGATGAAGCTACT < 41bp 0.431512130035819 0.755102231844477 NA NA prediction 0.510204463688953 Functional Gain - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109091073 chr5:109091072 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20427 0 0 1 0 2 MAN2A1 chr5:109091157 5'GT 109091157 Upstream 86bp 19054 chr17 46058833 46058833 1 + G T THCA 46058834 + 46058814 46058854 41 CATCTCCAAGAGGTACAGCGGGCGCCCTGTGAACCTGATGG CATCTCCAAGAGGTACAGCTGGCGCCCTGTGAACCTGATGG < 41bp 0.606810890812774 0.861912471180688 NA NA prediction 0.510203160735829 Functional Gain - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46058834 chr17:46058833 nonsynonymous SNV 0.275 4 20 hm7G_associated_SNPs_20428 0 0 0 0 1 CDK5RAP3 chr17:46058803 3'AG 46058803 Downstream 31bp 19055 chr20 62839773 62839773 1 + G T ACC 62839774 + 62839754 62839794 41 CTGCCGAGCAGAGCCAGCTGGGCCTGGGAGAGCCAGGGAAG CTGCCGAGCAGAGCCAGCTTGGCCTGGGAGAGCCAGGGAAG < 41bp 0.403277144084271 0.755101320715116 NA NA prediction 0.510202641430232 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62839774 chr20:62839773 synonymous SNV . 0 20 hm7G_associated_SNPs_20429 0 0 0 0 1 MYT1 chr20:62839840 5'GT 62839840 Upstream 68bp 19056 chrX 70679068 70679068 1 + G T TGCT 70679069 + 70679049 70679089 41 TTGAAGGGTATGATGATGAGGAGGAGGATGGGAAACCTAAG TTGAAGGGTATGATGATGATGAGGAGGATGGGAAACCTAAG < 41bp 0.445140439556272 0.755063113135109 NA NA prediction 0.510126226270218 Functional Gain - BCYRN1 ENSG00000147133 CDS Human protein_coding chrX:70679069 chrX:70679068 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_20430 0 0 0 0 2 BCYRN1 chrX:70679000 3'AG 70679000 Downstream 69bp 19057 chrX 70679068 70679068 1 + G T TGCT 70679069 + 70679049 70679089 41 TTGAAGGGTATGATGATGAGGAGGAGGATGGGAAACCTAAG TTGAAGGGTATGATGATGATGAGGAGGATGGGAAACCTAAG < 41bp 0.445140439556272 0.755063113135109 NA NA prediction 0.510126226270218 Functional Gain - BCYRN1 ENSG00000147133 CDS Human protein_coding chrX:70679069 chrX:70679068 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_20430 0 0 0 0 2 BCYRN1 chrX:70679101 5'GT 70679101 Upstream 34bp 19058 chr19 55179420 55179420 1 + G T LUSC 55179421 + 55179401 55179441 41 GCCTCCTCCATCCCAGGAAGGGGCCTCTCCAGCTGAGCCCA GCCTCCTCCATCCCAGGAATGGGCCTCTCCAGCTGAGCCCA < 41bp 0.435079498194431 0.755046301794741 NA NA prediction 0.510092603589482 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55179421 chr19:55179420 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_20432 0 0 0 0 1 LILRB4 chr19:55179324 3'AG 55179324 Downstream 97bp 19059 chr19 18538198 18538198 1 + G T COAD 18538199 + 18538179 18538219 41 TGAGTACCTGCTGCACATCGGTGCCCAGAAGTCAGCCCAGA TGAGTACCTGCTGCACATCTGTGCCCAGAAGTCAGCCCAGA < 41bp 0.615386057870915 0.870417708889698 NA NA prediction 0.510063302037565 Functional Gain - SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18538199 chr19:18538198 nonsynonymous SNV 0.034 3 20 hm7G_associated_SNPs_20436 0 0 1 0 2 SSBP4 chr19:18538161 3'AG 18538161 Downstream 38bp 19060 chr19 18538198 18538198 1 + G T COAD 18538199 + 18538179 18538219 41 TGAGTACCTGCTGCACATCGGTGCCCAGAAGTCAGCCCAGA TGAGTACCTGCTGCACATCTGTGCCCAGAAGTCAGCCCAGA < 41bp 0.615386057870915 0.870417708889698 NA NA prediction 0.510063302037565 Functional Gain - SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18538199 chr19:18538198 nonsynonymous SNV 0.034 3 20 hm7G_associated_SNPs_20436 0 0 1 0 2 SSBP4 chr19:18538233 5'GT 18538233 Upstream 36bp 19061 chr7 99077333 99077333 1 + G T LIHC 99077334 + 99077314 99077354 41 TACTTCACCAGAGAGGAGTGGGGCCACCTCAACTGGGGTCA TACTTCACCAGAGAGGAGTTGGGCCACCTCAACTGGGGTCA < 41bp 0.587193273509396 0.842202966896901 NA NA prediction 0.510019386775011 Functional Gain - ZNF789 ENSG00000198556 CDS Human protein_coding chr7:99077334 chr7:99077333 nonsynonymous SNV 0.752 3 20 hm7G_associated_SNPs_20437 0 0 1 0 2 ZNF789 chr7:99077284 3'AG 99077284 Downstream 50bp 19062 chr7 99077333 99077333 1 + G T LIHC 99077334 + 99077314 99077354 41 TACTTCACCAGAGAGGAGTGGGGCCACCTCAACTGGGGTCA TACTTCACCAGAGAGGAGTTGGGCCACCTCAACTGGGGTCA < 41bp 0.587193273509396 0.842202966896901 NA NA prediction 0.510019386775011 Functional Gain - ZNF789 ENSG00000198556 CDS Human protein_coding chr7:99077334 chr7:99077333 nonsynonymous SNV 0.752 3 20 hm7G_associated_SNPs_20437 0 0 1 0 2 ZNF789 chr7:99077410 5'GT 99077410 Upstream 78bp 19063 chr17 61619620 61619620 1 + G T BRCA 61619621 + 61619601 61619641 41 GGAAAGAATGACATCTTTGGGGAACCCGTCAGCCTCCATGC GGAAAGAATGACATCTTTGTGGAACCCGTCAGCCTCCATGC < 41bp 0.409399584455721 0.755009565831035 NA NA prediction 0.51001913166207 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61619621 chr17:61619620 nonsynonymous SNV 0.893 5 20 hm7G_associated_SNPs_20438 0 0 0 0 1 KCNH6 chr17:61619602 3'AG 61619602 Downstream 19bp 19064 chr1 89834284 89834284 1 + G T SARC 89834285 + 89834265 89834305 41 CCTACTTGATGAACCATCTGGCAGGACAGAATCATGGTAAG CCTACTTGATGAACCATCTTGCAGGACAGAATCATGGTAAG < 41bp 0.43076082855575 0.755005909634611 NA NA prediction 0.510011819269223 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89834285 chr1:89834284 synonymous SNV . 0 20 hm7G_associated_SNPs_20439 0 0 0 0 1 GBP6 chr1:89834300 5'GT 89834300 Upstream 17bp 19065 chr1 52549184 52549184 1 + G T UCEC 52549185 + 52549165 52549205 41 GACAGTTTAACAAGCCTTAGGAAGTTAGCTGAACAGTTCCC GACAGTTTAACAAGCCTTATGAAGTTAGCTGAACAGTTCCC < 41bp 0.602370240844104 0.857373907879166 NA NA prediction 0.510007334070124 Functional Gain - BTF3L4 ENSG00000134717 CDS Human protein_coding chr1:52549185 chr1:52549184 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20441 0 0 1 0 1 BTF3L4 chr1:52549213 5'GT 52549213 Upstream 30bp 19066 chr2 132290296 132290296 1 + G T LUAD 132290297 + 132290277 132290317 41 CGAAAGCCCACCACACTTAGGCAGTGCGAAGTGCTCATCCG CGAAAGCCCACCACACTTATGCAGTGCGAAGTGCTCATCCG < 41bp 0.627321145708092 0.882314564282231 NA NA prediction 0.509986837148278 Functional Gain - CCDC74A;CCDC74A ENSG00000163040 CDS Human protein_coding chr2:132290297 chr2:132290296 nonsynonymous SNV 0.214 1 20 hm7G_associated_SNPs_20442 0 0 0 0 1 CCDC74A chr2:132290354 5'GT 132290354 Upstream 59bp 19067 chr12 113871991 113871991 1 + G T COAD 113871992 + 113871972 113872012 41 TTGGCCAAGAGGGACGGCTGGGAGAATGTCCCCCCGTTTGA TTGGCCAAGAGGGACGGCTTGGAGAATGTCCCCCCGTTTGA < 41bp 0.627087003547709 0.882062194916017 NA NA prediction 0.509950382736616 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871992 chr12:113871991 nonsynonymous SNV 0.904 1 20 hm7G_associated_SNPs_20444 0 0 0 0 2 SDSL chr12:113871939 3'AG 113871939 Downstream 53bp 19068 chr12 113871991 113871991 1 + G T COAD 113871992 + 113871972 113872012 41 TTGGCCAAGAGGGACGGCTGGGAGAATGTCCCCCCGTTTGA TTGGCCAAGAGGGACGGCTTGGAGAATGTCCCCCCGTTTGA < 41bp 0.627087003547709 0.882062194916017 NA NA prediction 0.509950382736616 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871992 chr12:113871991 nonsynonymous SNV 0.904 1 20 hm7G_associated_SNPs_20444 0 0 0 0 2 SDSL chr12:113872027 5'GT 113872027 Upstream 37bp 19069 chrX 154261815 154261815 1 + G T LUSC 154261816 + 154261796 154261836 41 AACCCAGCTGTTCATTGGAGGTGTCACTGGATGGTAAGTGA AACCCAGCTGTTCATTGGATGTGTCACTGGATGGTAAGTGA < 41bp 0.44183958010845 0.754960652315777 NA NA prediction 0.509921304631555 Functional Gain - FUNDC2 ENSG00000165775 CDS Human protein_coding chrX:154261816 chrX:154261815 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20445 0 0 1 0 1 FUNDC2 chrX:154261828 5'GT 154261828 Upstream 14bp 19070 chr19 1082889 1082889 1 + G T KIRP 1082890 + 1082870 1082910 41 ACCACGAGCTCGTAGGGCTGGCCAAGGACAGCCTGAAGGCA ACCACGAGCTCGTAGGGCTTGCCAAGGACAGCCTGAAGGCA < 41bp 0.627339885238263 0.882292542478628 NA NA prediction 0.50990531448073 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1082890 chr19:1082889 synonymous SNV . 0 20 hm7G_associated_SNPs_20446 0 0 0 0 1 ARHGAP45 chr19:1082839 3'AG 1082839 Downstream 51bp 19071 chr15 102294694 102294694 1 + G T UCEC 102294695 + 102294675 102294715 41 ACAAGAAGACACTCGTGGAGGCGTCGGCAGAGCAGGCAGAC ACAAGAAGACACTCGTGGATGCGTCGGCAGAGCAGGCAGAC < 41bp 0.463987558664599 0.754943890588442 NA NA prediction 0.509887781176884 Functional Gain - LOC100128108;OR4F6 ENSG00000259660 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:102294695 chr15:102294694 . . 0 20 hm7G_associated_SNPs_20447 0 0 0 0 1 LOC100128108;OR4F6 chr15:102294598 3'AG 102294598 Downstream 97bp 19072 chr3 52557098 52557098 1 + G T ACC 52557099 + 52557079 52557119 41 GGGATCAGCACGTGCAATGGGAAGCTGCTGGATGTGCTGGC GGGATCAGCACGTGCAATGTGAAGCTGCTGGATGTGCTGGC < 41bp 0.431616264701071 0.754936113920239 NA NA prediction 0.509872227840478 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52557099 chr3:52557098 nonsynonymous SNV 0.899 5 20 hm7G_associated_SNPs_20448 0 0 0 0 2 STAB1 chr3:52557041 3'AG 52557041 Downstream 58bp 19073 chr3 52557098 52557098 1 + G T ACC 52557099 + 52557079 52557119 41 GGGATCAGCACGTGCAATGGGAAGCTGCTGGATGTGCTGGC GGGATCAGCACGTGCAATGTGAAGCTGCTGGATGTGCTGGC < 41bp 0.431616264701071 0.754936113920239 NA NA prediction 0.509872227840478 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52557099 chr3:52557098 nonsynonymous SNV 0.899 5 20 hm7G_associated_SNPs_20448 0 0 0 0 2 STAB1 chr3:52557150 5'GT 52557150 Upstream 53bp 19074 chr11 89896505 89896505 1 + G T LUSC 89896506 + 89896486 89896526 41 GTTATTCTGGGAGGTCACCGGGACTCCTGGGTATTTGGAGC GTTATTCTGGGAGGTCACCTGGACTCCTGGGTATTTGGAGC < 41bp 0.432548527412866 0.754927845114483 NA NA prediction 0.509855690228967 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89896506 chr11:89896505 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_20449 0 0 0 0 2 NAALAD2 chr11:89896478 3'AG 89896478 Downstream 28bp 19075 chr11 89896505 89896505 1 + G T LUSC 89896506 + 89896486 89896526 41 GTTATTCTGGGAGGTCACCGGGACTCCTGGGTATTTGGAGC GTTATTCTGGGAGGTCACCTGGACTCCTGGGTATTTGGAGC < 41bp 0.432548527412866 0.754927845114483 NA NA prediction 0.509855690228967 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89896506 chr11:89896505 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_20449 0 0 0 0 2 NAALAD2 chr11:89896597 5'GT 89896597 Upstream 93bp 19076 chr11 8936404 8936404 1 + G T LUSC 8936405 + 8936385 8936425 41 TCTGTGCCAGAGGAAGGAGGGGCAACCCATGTCTATCGTTA TCTGTGCCAGAGGAAGGAGTGGCAACCCATGTCTATCGTTA < 41bp 0.619286825147007 0.874203212839171 NA NA prediction 0.509832775384329 Functional Gain - AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8936405 chr11:8936404 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20450 0 0 1 0 2 AKIP1 chr11:8936373 3'AG 8936373 Downstream 32bp 19077 chr11 8936404 8936404 1 + G T LUSC 8936405 + 8936385 8936425 41 TCTGTGCCAGAGGAAGGAGGGGCAACCCATGTCTATCGTTA TCTGTGCCAGAGGAAGGAGTGGCAACCCATGTCTATCGTTA < 41bp 0.619286825147007 0.874203212839171 NA NA prediction 0.509832775384329 Functional Gain - AKIP1 ENSG00000166452 CDS Human protein_coding chr11:8936405 chr11:8936404 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20450 0 0 1 0 2 AKIP1 chr11:8936477 5'GT 8936477 Upstream 74bp 19078 chr11 549902 549902 1 + G T HNSC 549903 + 549883 549923 41 CAAACCCTGCCTTCTGCAGGGACTTGGGCACGTCTCTGGGC CAAACCCTGCCTTCTGCAGTGACTTGGGCACGTCTCTGGGC < 41bp 0.415872151569318 0.754909594464204 NA NA prediction 0.509819188928408 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:549903 chr11:549902 nonsynonymous SNV 0.182 4 20 hm7G_associated_SNPs_20451 0 0 1 0 2 LRRC56 chr11:549902 3'AG 549902 Downstream 1bp 19079 chr11 549902 549902 1 + G T HNSC 549903 + 549883 549923 41 CAAACCCTGCCTTCTGCAGGGACTTGGGCACGTCTCTGGGC CAAACCCTGCCTTCTGCAGTGACTTGGGCACGTCTCTGGGC < 41bp 0.415872151569318 0.754909594464204 NA NA prediction 0.509819188928408 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:549903 chr11:549902 nonsynonymous SNV 0.182 4 20 hm7G_associated_SNPs_20451 0 0 1 0 2 LRRC56 chr11:549998 5'GT 549998 Upstream 97bp 19080 chr1 93648963 93648963 1 + G T UCEC 93648964 + 93648944 93648984 41 ATAATAAAGACAATGAAGAGGAAAGTTTGCTTGCAAATGTT ATAATAAAGACAATGAAGATGAAAGTTTGCTTGCAAATGTT < 41bp 0.456545006029338 0.754864910595243 NA NA prediction 0.509729821190485 Functional Gain - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93648964 chr1:93648963 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_20453 0 0 1 0 2 CCDC18 chr1:93648917 3'AG 93648917 Downstream 47bp 19081 chr1 93648963 93648963 1 + G T UCEC 93648964 + 93648944 93648984 41 ATAATAAAGACAATGAAGAGGAAAGTTTGCTTGCAAATGTT ATAATAAAGACAATGAAGATGAAAGTTTGCTTGCAAATGTT < 41bp 0.456545006029338 0.754864910595243 NA NA prediction 0.509729821190485 Functional Gain - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93648964 chr1:93648963 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_20453 0 0 1 0 2 CCDC18 chr1:93649052 5'GT 93649052 Upstream 90bp 19082 chr16 47581411 47581411 1 + G T LUSC 47581412 + 47581392 47581432 41 GTGCCTGACTTTGGTGTCTGGGAAAGAGGAAGCAAATATAA GTGCCTGACTTTGGTGTCTTGGAAAGAGGAAGCAAATATAA < 41bp 0.426947192135077 0.754836480131185 NA NA prediction 0.50967296026237 Functional Gain - PHKB ENSG00000102893 CDS Human protein_coding chr16:47581412 chr16:47581411 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20457 0 0 1 0 1 PHKB chr16:47581344 3'AG 47581344 Downstream 68bp 19083 chr1 26131755 26131755 1 + G T UCEC 26131756 + 26131736 26131776 41 CATGACCAAGAGCAAAGATGGCTTCCTAGGGGTGAGTTGGG CATGACCAAGAGCAAAGATTGCTTCCTAGGGGTGAGTTGGG < 41bp 0.625004128246847 0.879833689137865 NA NA prediction 0.509659121782035 Functional Gain - SELENON ENSG00000162430 CDS Human protein_coding chr1:26131756 chr1:26131755 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_20459 0 0 0 0 1 SELENON chr1:26131766 5'GT 26131766 Upstream 12bp 19084 chr7 73452041 73452041 1 + G T SKCM 73452042 + 73452022 73452062 41 CTCTTCCCTCTGCAGCGCTGGGGCCTGGAGGCAAACCTCTT CTCTTCCCTCTGCAGCGCTTGGGCCTGGAGGCAAACCTCTT < 41bp 0.444280350839888 0.754807405833294 NA NA prediction 0.509614811666588 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73452042 chr7:73452041 synonymous SNV . 0 20 hm7G_associated_SNPs_20461 0 0 0 0 2 ELN chr7:73452037 3'AG 73452037 Downstream 5bp 19085 chr7 73452041 73452041 1 + G T SKCM 73452042 + 73452022 73452062 41 CTCTTCCCTCTGCAGCGCTGGGGCCTGGAGGCAAACCTCTT CTCTTCCCTCTGCAGCGCTTGGGCCTGGAGGCAAACCTCTT < 41bp 0.444280350839888 0.754807405833294 NA NA prediction 0.509614811666588 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73452042 chr7:73452041 synonymous SNV . 0 20 hm7G_associated_SNPs_20461 0 0 0 0 2 ELN chr7:73452069 5'GT 73452069 Upstream 29bp 19086 chr11 67817661 67817661 1 + G T LUSC 67817662 + 67817642 67817682 41 CACCATCGAGTTCTGCCTGGGCTGCGTCTCCAACACCGCCT CACCATCGAGTTCTGCCTGTGCTGCGTCTCCAACACCGCCT < 41bp 0.41571736191197 0.754805948312107 NA NA prediction 0.509611896624215 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67817662 chr11:67817661 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20462 0 0 1 0 2 TCIRG1 chr11:67817604 3'AG 67817604 Downstream 58bp 19087 chr11 67817661 67817661 1 + G T LUSC 67817662 + 67817642 67817682 41 CACCATCGAGTTCTGCCTGGGCTGCGTCTCCAACACCGCCT CACCATCGAGTTCTGCCTGTGCTGCGTCTCCAACACCGCCT < 41bp 0.41571736191197 0.754805948312107 NA NA prediction 0.509611896624215 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67817662 chr11:67817661 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20462 0 0 1 0 2 TCIRG1 chr11:67817721 5'GT 67817721 Upstream 61bp 19088 chr21 47418819 47418819 1 + G T ESCA 47418820 + 47418800 47418840 41 CGTCACTGCAGGGCACGAAGGGCTACCCCGGCCTCAAGGGG CGTCACTGCAGGGCACGAATGGCTACCCCGGCCTCAAGGGG < 41bp 0.404726641314792 0.754798089701126 NA NA prediction 0.509596179402251 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47418820 chr21:47418819 nonsynonymous SNV 0.855 2 20 hm7G_associated_SNPs_20463 0 0 1 0 2 COL6A1 chr21:47418811 3'AG 47418811 Downstream 9bp 19089 chr21 47418819 47418819 1 + G T ESCA 47418820 + 47418800 47418840 41 CGTCACTGCAGGGCACGAAGGGCTACCCCGGCCTCAAGGGG CGTCACTGCAGGGCACGAATGGCTACCCCGGCCTCAAGGGG < 41bp 0.404726641314792 0.754798089701126 NA NA prediction 0.509596179402251 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47418820 chr21:47418819 nonsynonymous SNV 0.855 2 20 hm7G_associated_SNPs_20463 0 0 1 0 2 COL6A1 chr21:47418873 5'GT 47418873 Upstream 55bp 19090 chr3 111764702 111764702 1 + G T UCEC 111764703 + 111764683 111764723 41 GTGTTGCCGCCATCTTGAAGGACTCCATCCAGACAAGCATC GTGTTGCCGCCATCTTGAATGACTCCATCCAGACAAGCATC < 41bp 0.553181471832115 0.807971915169359 NA NA prediction 0.509580886674489 Functional Gain - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111764703 chr3:111764702 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20464 0 0 0 0 1 TMPRSS7 chr3:111764790 5'GT 111764790 Upstream 89bp 19091 chr5 176518773 176518773 1 + G T THYM 176518774 + 176518754 176518794 41 CCTGGTAGAGAACGCTGTGGGCAGCATCCGCTATAACTACC CCTGGTAGAGAACGCTGTGTGCAGCATCCGCTATAACTACC < 41bp 0.404592857982024 0.754781154290724 NA NA prediction 0.509562308581447 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176518774 chr5:176518773 nonsynonymous SNV 0.820 4 20 hm7G_associated_SNPs_20465 0 0 1 0 2 FGFR4 chr5:176518686 3'AG 176518686 Downstream 88bp 19092 chr5 176518773 176518773 1 + G T THYM 176518774 + 176518754 176518794 41 CCTGGTAGAGAACGCTGTGGGCAGCATCCGCTATAACTACC CCTGGTAGAGAACGCTGTGTGCAGCATCCGCTATAACTACC < 41bp 0.404592857982024 0.754781154290724 NA NA prediction 0.509562308581447 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176518774 chr5:176518773 nonsynonymous SNV 0.820 4 20 hm7G_associated_SNPs_20465 0 0 1 0 2 FGFR4 chr5:176518809 5'GT 176518809 Upstream 37bp 19093 chr6 43624330 43624330 1 + G T UCEC 43624331 + 43624311 43624351 41 TAGGACTGTCCTTGTCTGAGGCCAAGAAGCTCAGCTCCTAC TAGGACTGTCCTTGTCTGATGCCAAGAAGCTCAGCTCCTAC < 41bp 0.614944323052122 0.869697432462871 NA NA prediction 0.509506218821498 Functional Gain - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43624331 chr6:43624330 nonsynonymous SNV 0.972 1 20 hm7G_associated_SNPs_20469 0 0 0 0 1 RSPH9 chr6:43624314 3'AG 43624314 Downstream 17bp 19094 chr1 109268386 109268386 1 + G T OV 109268387 + 109268367 109268407 41 CCTAGTTGCTTGTGCACCCGGAAGAGTGACGATCCAAGAAG CCTAGTTGCTTGTGCACCCTGAAGAGTGACGATCCAAGAAG < 41bp 0.607900936950192 0.862652176808516 NA NA prediction 0.509502479716646 Functional Gain - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109268387 chr1:109268386 stopgain 0.975 0 20 hm7G_associated_SNPs_20470 0 0 0 0 1 FNDC7 chr1:109268372 3'AG 109268372 Downstream 15bp 19095 chr1 221055673 221055673 1 + G T LUAD 221055674 + 221055654 221055694 41 GCAGCTGGCGGCGATGCTGGGCCTCACGGACGCACAGGTAA GCAGCTGGCGGCGATGCTGTGCCTCACGGACGCACAGGTAA < 41bp 0.623798232051104 0.878547767686956 NA NA prediction 0.509499071271704 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221055674 chr1:221055673 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_20471 0 0 1 0 1 HLX chr1:221055690 5'GT 221055690 Upstream 18bp 19096 chr2 71360625 71360625 1 + G T rs1813160 71360626 + 71360606 71360646 41 GAAAAGATGATAATGATGAGGAGGAGGAAGATATTGATTTT GAAAAGATGATAATGATGATGAGGAGGAAGATATTGATTTT < 41bp 0.578229918603543 0.832948965622697 NA NA prediction 0.509438094038308 Functional Gain - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71360626 chr2:71360625 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_20474 0 0 1 0 1 MPHOSPH10 chr2:71360706 5'GT 71360706 Upstream 82bp 19097 chr1 78401572 78401572 1 + G T GBM 78401573 + 78401553 78401593 41 GAACTGATCAAATTAAAAAGGAGTGGCTCTATTCAAGCTAA GAACTGATCAAATTAAAAATGAGTGGCTCTATTCAAGCTAA < 41bp 0.451110434934409 0.754712745890885 NA NA prediction 0.50942549178177 Functional Gain - NEXN ENSG00000162614 CDS Human protein_coding chr1:78401573 chr1:78401572 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20476 0 0 0 0 1 NEXN chr1:78401508 3'AG 78401508 Downstream 65bp 19098 chrX 153693822 153693822 1 + G T HNSC 153693823 + 153693803 153693843 41 CTGGACTTCTCCGTGGTCTGGGATGGAGACTTCCCCATAGA CTGGACTTCTCCGTGGTCTTGGATGGAGACTTCCCCATAGA < 41bp 0.411800380982326 0.754696061058088 NA NA prediction 0.509392122116175 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153693823 chrX:153693822 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20478 0 0 1 0 2 PLXNA3 chrX:153693767 3'AG 153693767 Downstream 56bp 19099 chrX 153693822 153693822 1 + G T HNSC 153693823 + 153693803 153693843 41 CTGGACTTCTCCGTGGTCTGGGATGGAGACTTCCCCATAGA CTGGACTTCTCCGTGGTCTTGGATGGAGACTTCCCCATAGA < 41bp 0.411800380982326 0.754696061058088 NA NA prediction 0.509392122116175 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153693823 chrX:153693822 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20478 0 0 1 0 2 PLXNA3 chrX:153693863 5'GT 153693863 Upstream 42bp 19100 chr12 69230479 69230479 1 + G T LUAD 69230480 + 69230460 69230500 41 AGTTACTGTGTATCAGGCAGGGGAGAGTGATACAGATTCAT AGTTACTGTGTATCAGGCATGGGAGAGTGATACAGATTCAT < 41bp 0.543488343676292 0.798178248457842 NA NA prediction 0.5093798095631 Functional Gain - MDM2 ENSG00000135679 CDS Human protein_coding chr12:69230480 chr12:69230479 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20479 0 0 1 0 1 MDM2 chr12:69230452 3'AG 69230452 Downstream 28bp 19101 chr5 50680439 50680439 1 + G T LUSC 50680440 + 50680420 50680460 41 ACGATCAGTATATTCTGAGGGTTTCTCCGGATTTGGAATGG ACGATCAGTATATTCTGAGTGTTTCTCCGGATTTGGAATGG < 41bp 0.606632220727228 0.861305151177516 NA NA prediction 0.509345860900575 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50680440 chr5:50680439 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20480 0 0 0 0 1 ISL1 chr5:50680375 3'AG 50680375 Downstream 65bp 19102 chr2 231264874 231264874 1 + G T LUAD 231264875 + 231264855 231264895 41 ATGAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGT ATGAGTGTGAGGTGTGCCGTGACGGAGGGGAGCTGTTCTGT < 41bp 0.621886269370249 0.876528521866525 NA NA prediction 0.509284504992552 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231264875 chr2:231264874 synonymous SNV . 0 20 hm7G_associated_SNPs_20482 0 0 0 0 2 SP140L chr2:231264842 3'AG 231264842 Downstream 33bp 19103 chr2 231264874 231264874 1 + G T LUAD 231264875 + 231264855 231264895 41 ATGAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGT ATGAGTGTGAGGTGTGCCGTGACGGAGGGGAGCTGTTCTGT < 41bp 0.621886269370249 0.876528521866525 NA NA prediction 0.509284504992552 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231264875 chr2:231264874 synonymous SNV . 0 20 hm7G_associated_SNPs_20482 0 0 0 0 2 SP140L chr2:231264957 5'GT 231264957 Upstream 84bp 19104 chr4 100784198 100784198 1 + G T COAD 100784199 + 100784179 100784219 41 AGATGGTTTACTCTGCACAGGAATGAACTGAAATACTTCAA AGATGGTTTACTCTGCACATGAATGAACTGAAATACTTCAA < 41bp 0.596185321624531 0.850820404026883 NA NA prediction 0.509270164804704 Functional Gain - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100784199 chr4:100784198 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_20483 0 0 0 0 2 DAPP1 chr4:100784167 3'AG 100784167 Downstream 32bp 19105 chr4 100784198 100784198 1 + G T COAD 100784199 + 100784179 100784219 41 AGATGGTTTACTCTGCACAGGAATGAACTGAAATACTTCAA AGATGGTTTACTCTGCACATGAATGAACTGAAATACTTCAA < 41bp 0.596185321624531 0.850820404026883 NA NA prediction 0.509270164804704 Functional Gain - DAPP1 ENSG00000070190 CDS Human protein_coding chr4:100784199 chr4:100784198 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_20483 0 0 0 0 2 DAPP1 chr4:100784229 5'GT 100784229 Upstream 32bp 19106 chr6 155129861 155129861 1 + G T UCEC 155129862 + 155129842 155129882 41 AAGATGGAGTGGAAGAGGAGGTCTTTGAACAAGAAGCTAAG AAGATGGAGTGGAAGAGGATGTCTTTGAACAAGAAGCTAAG < 41bp 0.425473394233056 0.754613719189395 NA NA prediction 0.509227438378789 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155129862 chr6:155129861 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20485 0 0 1 0 2 SCAF8 chr6:155129820 3'AG 155129820 Downstream 42bp 19107 chr6 155129861 155129861 1 + G T UCEC 155129862 + 155129842 155129882 41 AAGATGGAGTGGAAGAGGAGGTCTTTGAACAAGAAGCTAAG AAGATGGAGTGGAAGAGGATGTCTTTGAACAAGAAGCTAAG < 41bp 0.425473394233056 0.754613719189395 NA NA prediction 0.509227438378789 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155129862 chr6:155129861 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20485 0 0 1 0 2 SCAF8 chr6:155129932 5'GT 155129932 Upstream 72bp 19108 chr7 152549285 152549285 1 + G T LUSC 152549286 + 152549266 152549306 41 AGAGGGATTTGAAGAGAGTGGTGGATGCTAGGCTGAGGCTC AGAGGGATTTGAAGAGAGTTGTGGATGCTAGGCTGAGGCTC < 41bp 0.614653356320572 0.869265076647506 NA NA prediction 0.509223440653867 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152549286 chr7:152549285 synonymous SNV . 0 20 hm7G_associated_SNPs_20486 0 0 1 0 2 ACTR3B chr7:152549211 3'AG 152549211 Downstream 75bp 19109 chr7 152549285 152549285 1 + G T LUSC 152549286 + 152549266 152549306 41 AGAGGGATTTGAAGAGAGTGGTGGATGCTAGGCTGAGGCTC AGAGGGATTTGAAGAGAGTTGTGGATGCTAGGCTGAGGCTC < 41bp 0.614653356320572 0.869265076647506 NA NA prediction 0.509223440653867 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152549286 chr7:152549285 synonymous SNV . 0 20 hm7G_associated_SNPs_20486 0 0 1 0 2 ACTR3B chr7:152549336 5'GT 152549336 Upstream 52bp 19110 chr3 10081494 10081494 1 + G T COAD 10081495 + 10081475 10081515 41 GCCTACCTGAGATCCTAGGGGATTCCCAGCACGCTGATGTG GCCTACCTGAGATCCTAGGTGATTCCCAGCACGCTGATGTG < 41bp 0.418790514462655 0.754600187197712 NA NA prediction 0.509200374395425 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10081495 chr3:10081494 synonymous SNV . 0 20 hm7G_associated_SNPs_20489 0 0 1 0 2 FANCD2 chr3:10081405 3'AG 10081405 Downstream 90bp 19111 chr3 10081494 10081494 1 + G T COAD 10081495 + 10081475 10081515 41 GCCTACCTGAGATCCTAGGGGATTCCCAGCACGCTGATGTG GCCTACCTGAGATCCTAGGTGATTCCCAGCACGCTGATGTG < 41bp 0.418790514462655 0.754600187197712 NA NA prediction 0.509200374395425 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10081495 chr3:10081494 synonymous SNV . 0 20 hm7G_associated_SNPs_20489 0 0 1 0 2 FANCD2 chr3:10081529 5'GT 10081529 Upstream 36bp 19112 chr12 113314500 113314500 1 + G T UCEC 113314501 + 113314481 113314521 41 ACCCCGAGAGGAGAGAACAGGGGGAGTCGGGGGCTACCCAG ACCCCGAGAGGAGAGAACATGGGGAGTCGGGGGCTACCCAG < 41bp 0.413942233017543 0.754593630719963 NA NA prediction 0.509187261439925 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113314501 chr12:113314500 nonsynonymous SNV 0.001 4 20 hm7G_associated_SNPs_20490 0 0 0 0 1 RPH3A chr12:113314447 3'AG 113314447 Downstream 54bp 19113 chr5 61922983 61922983 1 + G T UCEC 61922984 + 61922964 61923004 41 CTCTCTGTATCCCACAGCTGGCCCTGAAGGACCCTGTTCAT CTCTCTGTATCCCACAGCTTGCCCTGAAGGACCCTGTTCAT < 41bp 0.598397142445212 0.852984220546712 NA NA prediction 0.509174156202999 Functional Gain - IPO11 ENSG00000086200 CDS Human protein_coding chr5:61922984 chr5:61922983 synonymous SNV . 0 20 hm7G_associated_SNPs_20492 0 0 0 0 1 IPO11 chr5:61922981 3'AG 61922981 Downstream 3bp 19114 chr5 624613 624613 1 + G T CESC 624614 + 624594 624634 41 CCCGTGAGAGCAAGCGAGCGGAAGGCTTCCCGACTGCATTT CCCGTGAGAGCAAGCGAGCTGAAGGCTTCCCGACTGCATTT < 41bp 0.613710329862149 0.868283561082169 NA NA prediction 0.50914646244004 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:624614 chr5:624613 nonsynonymous SNV 0.653 4 20 hm7G_associated_SNPs_20494 0 0 0 0 2 CEP72 chr5:624586 3'AG 624586 Downstream 28bp 19115 chr5 624613 624613 1 + G T CESC 624614 + 624594 624634 41 CCCGTGAGAGCAAGCGAGCGGAAGGCTTCCCGACTGCATTT CCCGTGAGAGCAAGCGAGCTGAAGGCTTCCCGACTGCATTT < 41bp 0.613710329862149 0.868283561082169 NA NA prediction 0.50914646244004 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:624614 chr5:624613 nonsynonymous SNV 0.653 4 20 hm7G_associated_SNPs_20494 0 0 0 0 2 CEP72 chr5:624694 5'GT 624694 Upstream 82bp 19116 chr20 2592967 2592967 1 + G T SKCM 2592968 + 2592948 2592988 41 GTGCCCCGGGGTTCTTGCTGGGAGACAGCTGTGGGCATTGT GTGCCCCGGGGTTCTTGCTTGGAGACAGCTGTGGGCATTGT < 41bp 0.618441440960505 0.873007994742685 NA NA prediction 0.50913310756436 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2592968 chr20:2592967 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20496 0 0 0 0 1 TMC2 chr20:2592986 5'GT 2592986 Upstream 20bp 19117 chrX 1719629 1719629 1 + G T UCEC 1719630 + 1719610 1719650 41 AGGAGCGGCGGCGGCTGCAGGAGGCCGAGCTGCGGCGCGTG AGGAGCGGCGGCGGCTGCATGAGGCCGAGCTGCGGCGCGTG < 41bp 0.436753709916837 0.754564587797065 NA NA prediction 0.509129175594129 Functional Gain - AKAP17A ENSG00000197976 CDS Human protein_coding chrX:1719630 chrX:1719629 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_20497 0 0 1 0 1 AKAP17A chrX:1719552 3'AG 1719552 Downstream 78bp 19118 chr1 215760009 215760009 1 + G T LUAD 215760010 + 215759990 215760030 41 TGTGGAGTGTTCAGGATGGGGGAAGTGGAAGTGAAATTGGT TGTGGAGTGTTCAGGATGGTGGAAGTGGAAGTGAAATTGGT < 41bp 0.60693943315446 0.861492094235673 NA NA prediction 0.509105322162426 Functional Gain - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215760010 chr1:215760009 synonymous SNV . 0 20 hm7G_associated_SNPs_20499 0 0 1 0 1 KCTD3 chr1:215760028 5'GT 215760028 Upstream 20bp 19119 chr11 61205195 61205195 1 + G T COAD 61205196 + 61205176 61205216 41 GCCCAACAGATTCCCAAAAGGACATGATTGAAATCCCTTTG GCCCAACAGATTCCCAAAATGACATGATTGAAATCCCTTTG < 41bp 0.6152297559633 0.869766835493985 NA NA prediction 0.509074159061371 Functional Gain - SDHAF2 ENSG00000167985;ENSG00000256591 CDS Human other chr11:61205196 chr11:61205195 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_20503 0 0 1 0 1 SDHAF2 chr11:61205097 3'AG 61205097 Downstream 99bp 19120 chr12 20874772 20874772 1 + G T LUSC 20874773 + 20874753 20874793 41 CCCCAAAAGATCCCCAGTGGGTAGGAGCCTGGTGGCTTGGC CCCCAAAAGATCCCCAGTGTGTAGGAGCCTGGTGGCTTGGC < 41bp 0.599776935619892 0.854313824173139 NA NA prediction 0.509073777106493 Functional Gain - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20874773 chr12:20874772 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20504 0 0 0 0 1 SLCO1C1 chr12:20874738 3'AG 20874738 Downstream 35bp 19121 chr10 124186524 124186524 1 + G T UCEC 124186525 + 124186505 124186545 41 CGCCATTGTAGCACAGCGGGGTCCCGGCAGATCTGCGTCTT CGCCATTGTAGCACAGCGGTGTCCCGGCAGATCTGCGTCTT < 41bp 0.602932537020842 0.857465296265696 NA NA prediction 0.50906551848971 Functional Gain - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124186525 chr10:124186524 nonsynonymous SNV 0.900 3 20 hm7G_associated_SNPs_20505 0 0 1 0 2 PLEKHA1 chr10:124186458 3'AG 124186458 Downstream 67bp 19122 chr10 124186524 124186524 1 + G T UCEC 124186525 + 124186505 124186545 41 CGCCATTGTAGCACAGCGGGGTCCCGGCAGATCTGCGTCTT CGCCATTGTAGCACAGCGGTGTCCCGGCAGATCTGCGTCTT < 41bp 0.602932537020842 0.857465296265696 NA NA prediction 0.50906551848971 Functional Gain - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124186525 chr10:124186524 nonsynonymous SNV 0.900 3 20 hm7G_associated_SNPs_20505 0 0 1 0 2 PLEKHA1 chr10:124186547 5'GT 124186547 Upstream 24bp 19123 chr10 111879098 111879098 1 + G T UCEC 111879099 + 111879079 111879119 41 TCAACTGCAGAAGGTTCTGGGACCAAGTTGTAAGGTATGTA TCAACTGCAGAAGGTTCTGTGACCAAGTTGTAAGGTATGTA < 41bp 0.428524740828278 0.754517615759612 NA NA prediction 0.509035231519223 Functional Gain - ADD3 ENSG00000148700 CDS Human protein_coding chr10:111879099 chr10:111879098 stopgain 0.999 1 20 hm7G_associated_SNPs_20506 0 0 1 0 1 ADD3 chr10:111879112 5'GT 111879112 Upstream 15bp 19124 chr2 217315748 217315748 1 + G T LUSC 217315749 + 217315729 217315769 41 CCAGGACCAGAGCTGCCCTGGATGCTGCAGCCAAGGAAATG CCAGGACCAGAGCTGCCCTTGATGCTGCAGCCAAGGAAATG < 41bp 0.409260526171478 0.754503073839431 NA NA prediction 0.509006147678862 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217315749 chr2:217315748 synonymous SNV . 0 20 hm7G_associated_SNPs_20507 0 0 1 0 1 SMARCAL1 chr2:217315787 5'GT 217315787 Upstream 40bp 19125 chr12 32491903 32491903 1 + G T LUAD 32491904 + 32491884 32491924 41 AGGAAAAAAGGTTAACCGTGGCTCCACCAGGTAAACATTTT AGGAAAAAAGGTTAACCGTTGCTCCACCAGGTAAACATTTT < 41bp 0.43259266056334 0.754476715994601 NA NA prediction 0.508953431989202 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32491904 chr12:32491903 synonymous SNV . 0 20 hm7G_associated_SNPs_20510 0 0 0 0 1 BICD1 chr12:32491913 5'GT 32491913 Upstream 11bp 19126 chr8 11415504 11415504 1 + G T SARC 11415505 + 11415485 11415525 41 TTCCTGAAGACAGATGAAGGGAGCAGATTGTCACTCCCAAG TTCCTGAAGACAGATGAAGTGAGCAGATTGTCACTCCCAAG < 41bp 0.420491275853765 0.754470947840969 NA NA prediction 0.508941895681937 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11415505 chr8:11415504 nonsynonymous SNV 0.718 3 20 hm7G_associated_SNPs_20511 0 0 0 0 2 BLK chr8:11415471 3'AG 11415471 Downstream 34bp 19127 chr8 11415504 11415504 1 + G T SARC 11415505 + 11415485 11415525 41 TTCCTGAAGACAGATGAAGGGAGCAGATTGTCACTCCCAAG TTCCTGAAGACAGATGAAGTGAGCAGATTGTCACTCCCAAG < 41bp 0.420491275853765 0.754470947840969 NA NA prediction 0.508941895681937 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11415505 chr8:11415504 nonsynonymous SNV 0.718 3 20 hm7G_associated_SNPs_20511 0 0 0 0 2 BLK chr8:11415547 5'GT 11415547 Upstream 44bp 19128 chr3 36485054 36485054 1 + G T UCEC 36485055 + 36485035 36485075 41 CAGGGCTGGTCTGCATCCAGGTGGCAAGGCTCATGCCTTTC CAGGGCTGGTCTGCATCCATGTGGCAAGGCTCATGCCTTTC < 41bp 0.423898318770681 0.754463788507576 NA NA prediction 0.508927577015152 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36485055 chr3:36485054 nonsynonymous SNV 0.120 0 20 hm7G_associated_SNPs_20513 0 0 0 0 1 STAC chr3:36485132 5'GT 36485132 Upstream 79bp 19129 chr1 215759922 215759922 1 + G T UCEC 215759923 + 215759903 215759943 41 GAGTAGCTTTAAATGCAAAGGTGGTTGGAGGGCCACATGGA GAGTAGCTTTAAATGCAAATGTGGTTGGAGGGCCACATGGA < 41bp 0.60680124285076 0.861217554669546 NA NA prediction 0.508832623637571 Functional Gain - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215759923 chr1:215759922 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_20515 0 0 1 0 1 KCTD3 chr1:215759838 3'AG 215759838 Downstream 85bp 19130 chr17 72346583 72346583 1 + G T UCEC 72346584 + 72346564 72346604 41 AGGGTGAGAAGGCTGGCATGGGACAGCTTCGGGAGCAGCTC AGGGTGAGAAGGCTGGCATTGGACAGCTTCGGGAGCAGCTC < 41bp 0.638425175853018 0.892828850713835 NA NA prediction 0.508807349721634 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72346584 chr17:72346583 nonsynonymous SNV 0.933 0 20 hm7G_associated_SNPs_20516 0 0 0 0 1 KIF19 chr17:72346540 3'AG 72346540 Downstream 44bp 19131 chr8 59352307 59352307 1 + G T LUSC 59352308 + 59352288 59352328 41 GAGGTTCAAGGCTTTTAGTGGAGAAGGGCAAAAACTTGGAA GAGGTTCAAGGCTTTTAGTTGAGAAGGGCAAAAACTTGGAA < 41bp 0.59747710391856 0.85187956147603 NA NA prediction 0.50880491511494 Functional Gain - UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59352308 chr8:59352307 stopgain 1.000 0 20 hm7G_associated_SNPs_20517 0 0 1 0 1 UBXN2B chr8:59352329 5'GT 59352329 Upstream 23bp 19132 chr5 137761108 137761108 1 + G T GBM 137761109 + 137761089 137761129 41 TGTTTCCACAGCCAGTGCTGGTTTCGGGGGTACATAAAAAG TGTTTCCACAGCCAGTGCTTGTTTCGGGGGTACATAAAAAG < 41bp 0.424543500160272 0.754396198368338 NA NA prediction 0.508792396736676 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137761109 chr5:137761108 synonymous SNV . 0 20 hm7G_associated_SNPs_20518 0 0 1 0 1 KDM3B chr5:137761100 3'AG 137761100 Downstream 9bp 19133 chrX 65412080 65412080 1 + G T LUSC 65412081 + 65412061 65412101 41 GAGGCCCATGAGATTCAATGGGACTATGGCCCGATGGGGCA GAGGCCCATGAGATTCAATTGGACTATGGCCCGATGGGGCA < 41bp 0.403383431410992 0.754383410160646 NA NA prediction 0.508766820321292 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65412081 chrX:65412080 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20519 0 0 1 0 1 HEPH chrX:65412140 5'GT 65412140 Upstream 61bp 19134 chr2 136396678 136396678 1 + G T LUAD 136396679 + 136396659 136396699 41 AGCAGCAAAAGCATAGGCAGGCTTTCAAAAACAGGTATAAA AGCAGCAAAAGCATAGGCATGCTTTCAAAAACAGGTATAAA < 41bp 0.612085416699623 0.86646058273427 NA NA prediction 0.508750332069294 Functional Gain - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136396679 chr2:136396678 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20521 0 0 1 0 1 R3HDM1 chr2:136396692 5'GT 136396692 Upstream 15bp 19135 chr16 68901089 68901089 1 + G T UCEC 68901090 + 68901070 68901110 41 TGAGACCTAATGGTGTTCAGGCAGTAGTCCGGGGCATTTTG TGAGACCTAATGGTGTTCATGCAGTAGTCCGGGGCATTTTG < 41bp 0.4196812008346 0.754374852671933 NA NA prediction 0.508749705343867 Functional Gain - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68901090 chr16:68901089 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_20522 0 0 1 0 1 TANGO6 chr16:68901123 5'GT 68901123 Upstream 35bp 19136 chr18 55020218 55020218 1 + G T LUSC 55020219 + 55020199 55020239 41 CTCCCAAGTACGCCAGCCCGGGGGCGCCCCGAATGTACATG CTCCCAAGTACGCCAGCCCTGGGGCGCCCCGAATGTACATG < 41bp 0.431931452362612 0.754373277126288 NA NA prediction 0.508746554252575 Functional Gain - ST8SIA3 ENSG00000177511 CDS Human protein_coding chr18:55020219 chr18:55020218 synonymous SNV . 0 20 hm7G_associated_SNPs_20523 0 0 0 0 1 ST8SIA3 chr18:55020256 5'GT 55020256 Upstream 39bp 19137 chrX 105197057 105197057 1 + G T LUAD 105197058 + 105197038 105197078 41 CACAGCGAACCACAGGATGGGGCCAAAAGGCCATTGAAGTG CACAGCGAACCACAGGATGTGGCCAAAAGGCCATTGAAGTG < 41bp 0.436993289291688 0.754345899784992 NA NA prediction 0.508691799569985 Functional Gain - NRK ENSG00000123572 CDS Human protein_coding chrX:105197058 chrX:105197057 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20524 0 0 0 0 1 NRK chrX:105197026 3'AG 105197026 Downstream 32bp 19138 chr17 18133340 18133340 1 + G T LUAD 18133341 + 18133321 18133361 41 GCCATCGGCACCAGGTCTGGGGCTGTCAAGATGTATCCTTT GCCATCGGCACCAGGTCTGTGGCTGTCAAGATGTATCCTTT < 41bp 0.410519176410748 0.754345098182923 NA NA prediction 0.508690196365847 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18133341 chr17:18133340 nonsynonymous SNV 0.937 4 20 hm7G_associated_SNPs_20525 0 0 1 0 2 LLGL1 chr17:18133255 3'AG 18133255 Downstream 86bp 19139 chr17 18133340 18133340 1 + G T LUAD 18133341 + 18133321 18133361 41 GCCATCGGCACCAGGTCTGGGGCTGTCAAGATGTATCCTTT GCCATCGGCACCAGGTCTGTGGCTGTCAAGATGTATCCTTT < 41bp 0.410519176410748 0.754345098182923 NA NA prediction 0.508690196365847 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18133341 chr17:18133340 nonsynonymous SNV 0.937 4 20 hm7G_associated_SNPs_20525 0 0 1 0 2 LLGL1 chr17:18133352 5'GT 18133352 Upstream 13bp 19140 chr5 86672296 86672296 1 + G T OV 86672297 + 86672277 86672317 41 CTCCCATATACCATTAAAAGGTATTGAACCAGGGTCCCTGC CTCCCATATACCATTAAAATGTATTGAACCAGGGTCCCTGC < 41bp 0.437805769456103 0.754344476453759 NA NA prediction 0.508688952907517 Functional Gain - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86672297 chr5:86672296 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20526 0 0 1 0 2 RASA1 chr5:86672210 3'AG 86672210 Downstream 87bp 19141 chr5 86672296 86672296 1 + G T OV 86672297 + 86672277 86672317 41 CTCCCATATACCATTAAAAGGTATTGAACCAGGGTCCCTGC CTCCCATATACCATTAAAATGTATTGAACCAGGGTCCCTGC < 41bp 0.437805769456103 0.754344476453759 NA NA prediction 0.508688952907517 Functional Gain - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86672297 chr5:86672296 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20526 0 0 1 0 2 RASA1 chr5:86672382 5'GT 86672382 Upstream 87bp 19142 chr17 19318441 19318441 1 + G T LUAD 19318442 + 19318422 19318462 41 GCTAAGAGCCGCTGCCAGGGGTACTGGAACGAGGGGCGCGC GCTAAGAGCCGCTGCCAGGTGTACTGGAACGAGGGGCGCGC < 41bp 0.622622978816671 0.876958653962473 NA NA prediction 0.508671350291604 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19318442 chr17:19318441 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20528 0 0 0 0 1 RNF112 chr17:19318351 3'AG 19318351 Downstream 91bp 19143 chr6 135507142 135507142 1 + G T UCEC 135507143 + 135507123 135507163 41 CGTCACTTGGGGAAAACAAGGTGGACCCGGGAAGAGGTAAC CGTCACTTGGGGAAAACAATGTGGACCCGGGAAGAGGTAAC < 41bp 0.484119333947575 0.754330317040153 NA NA prediction 0.508660634080307 Functional Gain - MYB ENSG00000118513 CDS Human protein_coding chr6:135507143 chr6:135507142 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20529 0 0 1 0 1 MYB chr6:135507158 5'GT 135507158 Upstream 17bp 19144 chr6 4130748 4130748 1 + G T UCEC 4130749 + 4130729 4130769 41 ACTAGAGGATTCCAATGAAGGACTCAAACTGGACACCAAAT ACTAGAGGATTCCAATGAATGACTCAAACTGGACACCAAAT < 41bp 0.596269035528848 0.850591514150579 NA NA prediction 0.508644957243461 Functional Gain - ECI2 ENSG00000198721 CDS Human protein_coding chr6:4130749 chr6:4130748 nonsynonymous SNV 0.451 0 20 hm7G_associated_SNPs_20530 0 0 0 2 1 ECI2 chr6:4130719 3'AG 4130719 Downstream 30bp 19145 chr15 20489431 20489431 1 + G T LGG 20489432 + 20489412 20489452 41 GGACTCAAGTGTCACTGAAGGACCAGATCACCAGTGGAAAA GGACTCAAGTGTCACTGAATGACCAGATCACCAGTGGAAAA < 41bp 0.568849385874417 0.823168606192203 NA NA prediction 0.508638440635572 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20489432 chr15:20489431 . . 0 20 hm7G_associated_SNPs_20531 0 0 0 1 2 CHEK2P2 chr15:20489408 3'AG 20489408 Downstream 24bp 19146 chr15 20489431 20489431 1 + G T LGG 20489432 + 20489412 20489452 41 GGACTCAAGTGTCACTGAAGGACCAGATCACCAGTGGAAAA GGACTCAAGTGTCACTGAATGACCAGATCACCAGTGGAAAA < 41bp 0.568849385874417 0.823168606192203 NA NA prediction 0.508638440635572 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20489432 chr15:20489431 . . 0 20 hm7G_associated_SNPs_20531 0 0 0 1 2 CHEK2P2 chr15:20489495 5'GT 20489495 Upstream 65bp 19147 chr3 186331093 186331093 1 + G T UCEC 186331094 + 186331074 186331114 41 CAATCAAAACCTTCCTTGGGGATACAAACACACCTTGAACC CAATCAAAACCTTCCTTGGTGATACAAACACACCTTGAACC < 41bp 0.438731738691064 0.754310188906032 NA NA prediction 0.508620377812064 Functional Gain - AHSG ENSG00000145192 CDS Human protein_coding chr3:186331094 chr3:186331093 stopgain 0.011 1 20 hm7G_associated_SNPs_20534 0 0 1 0 1 AHSG chr3:186331143 5'GT 186331143 Upstream 51bp 19148 chr16 50816317 50816317 1 + G T LIHC 50816318 + 50816298 50816338 41 GGCTTGGAGATAATGATTGGGAAGAAGAAAGGCATCCAGGG GGCTTGGAGATAATGATTGTGAAGAAGAAAGGCATCCAGGG < 41bp 0.591444309832952 0.845752513062918 NA NA prediction 0.508616406459931 Functional Gain - CYLD ENSG00000083799 CDS Human protein_coding chr16:50816318 chr16:50816317 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20535 0 0 1 0 2 CYLD chr16:50816236 3'AG 50816236 Downstream 82bp 19149 chr16 50816317 50816317 1 + G T LIHC 50816318 + 50816298 50816338 41 GGCTTGGAGATAATGATTGGGAAGAAGAAAGGCATCCAGGG GGCTTGGAGATAATGATTGTGAAGAAGAAAGGCATCCAGGG < 41bp 0.591444309832952 0.845752513062918 NA NA prediction 0.508616406459931 Functional Gain - CYLD ENSG00000083799 CDS Human protein_coding chr16:50816318 chr16:50816317 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20535 0 0 1 0 2 CYLD chr16:50816377 5'GT 50816377 Upstream 61bp 19150 chr3 185316311 185316311 1 + G T LUSC 185316312 + 185316292 185316332 41 TCTGCTTGTAATGGAACACGGAATGTGGCCCCTTCAGGAGA TCTGCTTGTAATGGAACACTGAATGTGGCCCCTTCAGGAGA < 41bp 0.613626171591849 0.867929655744486 NA NA prediction 0.508606968305274 Functional Gain - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185316312 chr3:185316311 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_20537 0 0 1 0 1 SENP2 chr3:185316333 5'GT 185316333 Upstream 23bp 19151 chr6 52053913 52053913 1 + G T LUAD 52053914 + 52053894 52053934 41 AGGCAAAGTGCCGCCACTTGGGCTGCATCAACGCTGATGGG AGGCAAAGTGCCGCCACTTTGGCTGCATCAACGCTGATGGG < 41bp 0.596905705181214 0.851208091507979 NA NA prediction 0.508604772653529 Functional Gain - IL17A ENSG00000112115 CDS Human protein_coding chr6:52053914 chr6:52053913 nonsynonymous SNV 0.086 0 20 hm7G_associated_SNPs_20538 0 0 0 0 1 IL17A chr6:52053853 3'AG 52053853 Downstream 61bp 19152 chr1 244855205 244855205 1 + G T LUAD 244855206 + 244855186 244855226 41 CTGTTGTTTTAGGGAGCACGGACTTCCTAGAAGATGATATA CTGTTGTTTTAGGGAGCACTGACTTCCTAGAAGATGATATA < 41bp 0.602596624033627 0.856893879779459 NA NA prediction 0.508594511491663 Functional Gain - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244855206 chr1:244855205 synonymous SNV . 0 20 hm7G_associated_SNPs_20540 0 0 1 0 2 DESI2 chr1:244855181 3'AG 244855181 Downstream 25bp 19153 chr1 244855205 244855205 1 + G T LUAD 244855206 + 244855186 244855226 41 CTGTTGTTTTAGGGAGCACGGACTTCCTAGAAGATGATATA CTGTTGTTTTAGGGAGCACTGACTTCCTAGAAGATGATATA < 41bp 0.602596624033627 0.856893879779459 NA NA prediction 0.508594511491663 Functional Gain - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244855206 chr1:244855205 synonymous SNV . 0 20 hm7G_associated_SNPs_20540 0 0 1 0 2 DESI2 chr1:244855186 3'AG 244855186 Downstream 20bp 19154 chr3 184298647 184298647 1 + G T THYM 184298648 + 184298628 184298668 41 TATGGAGAGCGACCCTACTGGGACATGAGCAACCAGGATGT TATGGAGAGCGACCCTACTTGGACATGAGCAACCAGGATGT < 41bp 0.618628608082652 0.872912764979407 NA NA prediction 0.508568313793509 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184298648 chr3:184298647 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20541 0 0 0 0 1 EPHB3 chr3:184298666 5'GT 184298666 Upstream 20bp 19155 chr5 38350668 38350668 1 + G T LUSC 38350669 + 38350649 38350689 41 GCATAGCAGCTTACAGCCAGGCTGGCAAAGGGCGGCTGAGC GCATAGCAGCTTACAGCCATGCTGGCAAAGGGCGGCTGAGC < 41bp 0.624493815675727 0.878777034293973 NA NA prediction 0.508566437236493 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38350669 chr5:38350668 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_20542 0 0 0 0 2 EGFLAM chr5:38350603 3'AG 38350603 Downstream 66bp 19156 chr5 38350668 38350668 1 + G T LUSC 38350669 + 38350649 38350689 41 GCATAGCAGCTTACAGCCAGGCTGGCAAAGGGCGGCTGAGC GCATAGCAGCTTACAGCCATGCTGGCAAAGGGCGGCTGAGC < 41bp 0.624493815675727 0.878777034293973 NA NA prediction 0.508566437236493 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38350669 chr5:38350668 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_20542 0 0 0 0 2 EGFLAM chr5:38350720 5'GT 38350720 Upstream 53bp 19157 chr16 29845281 29845281 1 + G T MESO 29845282 + 29845262 29845302 41 ACATCCCCCGGAAGGAAGTGGAGGTCGTGGAGATCATTCAG ACATCCCCCGGAAGGAAGTTGAGGTCGTGGAGATCATTCAG < 41bp 0.406544495956776 0.754263994123468 NA NA prediction 0.508527988246936 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29845282 chr16:29845281 synonymous SNV . 0 20 hm7G_associated_SNPs_20545 0 0 1 0 1 MVP chr16:29845256 3'AG 29845256 Downstream 26bp 19158 chr2 70488380 70488380 1 + G T OV 70488381 + 70488361 70488401 41 GCCTCTGGTGGCCTACTGGGGATATATAATGGAGAGACTCT GCCTCTGGTGGCCTACTGGTGATATATAATGGAGAGACTCT < 41bp 0.614697327836636 0.868950536272636 NA NA prediction 0.508506416872 Functional Gain - PCYOX1 ENSG00000116005 CDS Human protein_coding chr2:70488381 chr2:70488380 nonsynonymous SNV 0.760 4 20 hm7G_associated_SNPs_20547 0 0 1 0 1 PCYOX1 chr2:70488344 3'AG 70488344 Downstream 37bp 19159 chr8 2041848 2041848 1 + G T GBM 2041849 + 2041829 2041869 41 AGTACATCTTCCGAGTCAAGGCGGTCAATGCTGTGGGGATG AGTACATCTTCCGAGTCAATGCGGTCAATGCTGTGGGGATG < 41bp 0.414341027639971 0.754237136484637 NA NA prediction 0.508474272969274 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2041849 chr8:2041848 nonsynonymous SNV 0.470 4 20 hm7G_associated_SNPs_20549 0 0 0 0 2 MYOM2 chr8:2041797 3'AG 2041797 Downstream 52bp 19160 chr8 2041848 2041848 1 + G T GBM 2041849 + 2041829 2041869 41 AGTACATCTTCCGAGTCAAGGCGGTCAATGCTGTGGGGATG AGTACATCTTCCGAGTCAATGCGGTCAATGCTGTGGGGATG < 41bp 0.414341027639971 0.754237136484637 NA NA prediction 0.508474272969274 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2041849 chr8:2041848 nonsynonymous SNV 0.470 4 20 hm7G_associated_SNPs_20549 0 0 0 0 2 MYOM2 chr8:2041918 5'GT 2041918 Upstream 71bp 19161 chr1 16358965 16358965 1 + G T TGCT 16358966 + 16358946 16358986 41 CCAGGACATCTTGGCCAGGGGCTGCCCCACGGAACCAGTGA CCAGGACATCTTGGCCAGGTGCTGCCCCACGGAACCAGTGA < 41bp 0.412084292363895 0.754230678425351 NA NA prediction 0.508461356850703 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358966 chr1:16358965 nonsynonymous SNV 0.017 4 20 hm7G_associated_SNPs_20550 0 0 0 0 3 CLCNKA chr1:16358938 3'AG 16358938 Downstream 28bp 19162 chr1 16358965 16358965 1 + G T TGCT 16358966 + 16358946 16358986 41 CCAGGACATCTTGGCCAGGGGCTGCCCCACGGAACCAGTGA CCAGGACATCTTGGCCAGGTGCTGCCCCACGGAACCAGTGA < 41bp 0.412084292363895 0.754230678425351 NA NA prediction 0.508461356850703 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358966 chr1:16358965 nonsynonymous SNV 0.017 4 20 hm7G_associated_SNPs_20550 0 0 0 0 3 CLCNKA chr1:16358941 3'AG 16358941 Downstream 25bp 19163 chr1 16358965 16358965 1 + G T TGCT 16358966 + 16358946 16358986 41 CCAGGACATCTTGGCCAGGGGCTGCCCCACGGAACCAGTGA CCAGGACATCTTGGCCAGGTGCTGCCCCACGGAACCAGTGA < 41bp 0.412084292363895 0.754230678425351 NA NA prediction 0.508461356850703 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16358966 chr1:16358965 nonsynonymous SNV 0.017 4 20 hm7G_associated_SNPs_20550 0 0 0 0 3 CLCNKA chr1:16359021 5'GT 16359021 Upstream 57bp 19164 chr2 86705776 86705776 1 + G T SARC 86705777 + 86705757 86705797 41 CATTCTGTAAGAGCGAAATGGGGAATAAAGGCAAACTGCCC CATTCTGTAAGAGCGAAATTGGGAATAAAGGCAAACTGCCC < 41bp 0.616235804555011 0.870453988551964 NA NA prediction 0.508436367993907 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86705777 chr2:86705776 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20551 0 0 1 0 2 KDM3A chr2:86705731 3'AG 86705731 Downstream 46bp 19165 chr2 86705776 86705776 1 + G T SARC 86705777 + 86705757 86705797 41 CATTCTGTAAGAGCGAAATGGGGAATAAAGGCAAACTGCCC CATTCTGTAAGAGCGAAATTGGGAATAAAGGCAAACTGCCC < 41bp 0.616235804555011 0.870453988551964 NA NA prediction 0.508436367993907 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86705777 chr2:86705776 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20551 0 0 1 0 2 KDM3A chr2:86705858 5'GT 86705858 Upstream 83bp 19166 chr17 48745040 48745040 1 + G T LUAD 48745041 + 48745021 48745061 41 AGGTGGAGGGCATCAGGCAGGGTGAGCTCCAGCTGCTGCGC AGGTGGAGGGCATCAGGCATGGTGAGCTCCAGCTGCTGCGC < 41bp 0.406099613024863 0.754215415451846 NA NA prediction 0.508430830903691 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48745041 chr17:48745040 nonsynonymous SNV 0.719 1 20 hm7G_associated_SNPs_20552 0 0 1 0 1 ABCC3 chr17:48745118 5'GT 48745118 Upstream 79bp 19167 chr3 119190272 119190272 1 + G T LUSC 119190273 + 119190253 119190293 41 ACTAAGAACAGACTGTACCGGGAAAATGACTGCATGTTCCC ACTAAGAACAGACTGTACCTGGAAAATGACTGCATGTTCCC < 41bp 0.573805366740322 0.828019885230856 NA NA prediction 0.508429036981067 Functional Gain - POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119190273 chr3:119190272 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_20553 0 0 1 2 1 POGLUT1 chr3:119190299 5'GT 119190299 Upstream 28bp 19168 chr10 88419680 88419680 1 + G T SARC 88419681 + 88419661 88419701 41 GACCTTCGGGGCCTGCAAGGGCAATGGCGAGTCCCTGTGGC GACCTTCGGGGCCTGCAAGTGCAATGGCGAGTCCCTGTGGC < 41bp 0.625575246832908 0.879789237452246 NA NA prediction 0.508427981238676 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419681 chr10:88419680 nonsynonymous SNV 0.355 2 20 hm7G_associated_SNPs_20554 0 0 0 0 1 OPN4 chr10:88419652 3'AG 88419652 Downstream 29bp 19169 chr1 100598848 100598848 1 + G T SARC 100598849 + 100598829 100598869 41 CGCAGGGAAAAGATTTTGTGGTGAACACGCTGGAGCCGCGG CGCAGGGAAAAGATTTTGTTGTGAACACGCTGGAGCCGCGG < 41bp 0.594884141441001 0.849088542595105 NA NA prediction 0.508408802308209 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100598849 chr1:100598848 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_20559 0 0 1 2 1 TRMT13 chr1:100598871 5'GT 100598871 Upstream 24bp 19170 chr4 148441086 148441086 1 + G T COAD 148441087 + 148441067 148441107 41 CCTTTTTGCAGAAGTCCTCGGTGGGGATCACCGTCCTCAAC CCTTTTTGCAGAAGTCCTCTGTGGGGATCACCGTCCTCAAC < 41bp 0.429520094154067 0.754196920852388 NA NA prediction 0.508393841704776 Functional Gain - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148441087 chr4:148441086 synonymous SNV . 0 20 hm7G_associated_SNPs_20561 0 0 0 0 2 EDNRA chr4:148441003 3'AG 148441003 Downstream 84bp 19171 chr4 148441086 148441086 1 + G T COAD 148441087 + 148441067 148441107 41 CCTTTTTGCAGAAGTCCTCGGTGGGGATCACCGTCCTCAAC CCTTTTTGCAGAAGTCCTCTGTGGGGATCACCGTCCTCAAC < 41bp 0.429520094154067 0.754196920852388 NA NA prediction 0.508393841704776 Functional Gain - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148441087 chr4:148441086 synonymous SNV . 0 20 hm7G_associated_SNPs_20561 0 0 0 0 2 EDNRA chr4:148441130 5'GT 148441130 Upstream 45bp 19172 chr15 76222283 76222283 1 + G T LUAD 76222284 + 76222264 76222304 41 TTGGTTATAATTGCTGTAAGGTGGGAGCCAGTAATTATCTG TTGGTTATAATTGCTGTAATGTGGGAGCCAGTAATTATCTG < 41bp 0.447507388405108 0.754163731600474 NA NA prediction 0.508327463200948 Functional Gain - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76222284 chr15:76222283 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_20562 0 0 1 0 1 FBXO22 chr15:76222225 3'AG 76222225 Downstream 59bp 19173 chr8 36780055 36780055 1 + G T LUSC 36780056 + 36780036 36780076 41 ACAGCTTGGTGGACTGGAAGGGTCCCTCCAAGAAACAAATC ACAGCTTGGTGGACTGGAATGGTCCCTCCAAGAAACAAATC < 41bp 0.421471266377352 0.754155475369946 NA NA prediction 0.508310950739892 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780056 chr8:36780055 nonsynonymous SNV 0.175 0 20 hm7G_associated_SNPs_20563 0 0 0 0 2 KCNU1 chr8:36780008 3'AG 36780008 Downstream 48bp 19174 chr8 36780055 36780055 1 + G T LUSC 36780056 + 36780036 36780076 41 ACAGCTTGGTGGACTGGAAGGGTCCCTCCAAGAAACAAATC ACAGCTTGGTGGACTGGAATGGTCCCTCCAAGAAACAAATC < 41bp 0.421471266377352 0.754155475369946 NA NA prediction 0.508310950739892 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780056 chr8:36780055 nonsynonymous SNV 0.175 0 20 hm7G_associated_SNPs_20563 0 0 0 0 2 KCNU1 chr8:36780147 5'GT 36780147 Upstream 93bp 19175 chr1 154542739 154542739 1 + G T LUAD 154542740 + 154542720 154542760 41 CTCTCATTTCCCAGGAGTGGGAAGATTATCGCCTCACCTGG CTCTCATTTCCCAGGAGTGTGAAGATTATCGCCTCACCTGG < 41bp 0.440920344893216 0.754153631442926 NA NA prediction 0.508307262885853 Functional Gain - CHRNB2 ENSG00000160716 CDS Human protein_coding chr1:154542740 chr1:154542739 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20564 0 0 0 0 1 CHRNB2 chr1:154542734 3'AG 154542734 Downstream 6bp 19176 chr19 20215056 20215056 1 + G T UCEC 20215057 + 20215037 20215077 41 GTGTTTTTCAGGGACCATTGGAATTTAGAGATGTGGCCATA GTGTTTTTCAGGGACCATTTGAATTTAGAGATGTGGCCATA < 41bp 0.593936909709396 0.848086151258738 NA NA prediction 0.508298483098685 Functional Gain - ZNF90 ENSG00000213988 CDS Human protein_coding chr19:20215057 chr19:20215056 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_20565 0 0 0 0 1 ZNF90 chr19:20215048 3'AG 20215048 Downstream 9bp 19177 chr3 56600665 56600665 1 + G T UCEC 56600666 + 56600646 56600686 41 GTATTTCTAATCAGCCAAAGGATGAGAACATTATGGGATTA GTATTTCTAATCAGCCAAATGATGAGAACATTATGGGATTA < 41bp 0.579970233250274 0.834118534968344 NA NA prediction 0.50829660343614 Functional Gain - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56600666 chr3:56600665 nonsynonymous SNV 0.427 2 20 hm7G_associated_SNPs_20566 0 0 1 0 1 CCDC66 chr3:56600622 3'AG 56600622 Downstream 44bp 19178 chr9 96055414 96055414 1 + G T UCEC 96055415 + 96055395 96055435 41 ACAATGATTCGGAGCTCGAGGATGCTGACATAAAGAAGGAG ACAATGATTCGGAGCTCGATGATGCTGACATAAAGAAGGAG < 41bp 0.42173292010683 0.754131949990914 NA NA prediction 0.508263899981828 Functional Gain - WNK2 ENSG00000165238 CDS Human protein_coding chr9:96055415 chr9:96055414 nonsynonymous SNV 0.856 5 20 hm7G_associated_SNPs_20568 0 0 1 0 1 WNK2 chr9:96055455 5'GT 96055455 Upstream 42bp 19179 chr1 151496752 151496752 1 + G T UCEC 151496753 + 151496733 151496773 41 GGTGAAGATTTACGACATGGGCTGGAGACCCAGGTGATGGA GGTGAAGATTTACGACATGTGCTGGAGACCCAGGTGATGGA < 41bp 0.618176924362632 0.872307585227081 NA NA prediction 0.508261321728898 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151496753 chr1:151496752 nonsynonymous SNV 0.710 1 20 hm7G_associated_SNPs_20569 0 0 0 0 2 CGN chr1:151496702 3'AG 151496702 Downstream 51bp 19180 chr1 151496752 151496752 1 + G T UCEC 151496753 + 151496733 151496773 41 GGTGAAGATTTACGACATGGGCTGGAGACCCAGGTGATGGA GGTGAAGATTTACGACATGTGCTGGAGACCCAGGTGATGGA < 41bp 0.618176924362632 0.872307585227081 NA NA prediction 0.508261321728898 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151496753 chr1:151496752 nonsynonymous SNV 0.710 1 20 hm7G_associated_SNPs_20569 0 0 0 0 2 CGN chr1:151496834 5'GT 151496834 Upstream 83bp 19181 chr17 41931194 41931194 1 + G T LUSC 41931195 + 41931175 41931215 41 CTTCTCCTGGGCTCTACCCGGCAGCCACCACAGCCAAGCAG CTTCTCCTGGGCTCTACCCTGCAGCCACCACAGCCAAGCAG < 41bp 0.415969476848693 0.754127863377965 NA NA prediction 0.50825572675593 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41931195 chr17:41931194 synonymous SNV . 0 20 hm7G_associated_SNPs_20570 0 0 0 0 1 CD300LG chr17:41931175 3'AG 41931175 Downstream 20bp 19182 chr1 171244541 171244541 1 + G T LUAD 171244542 + 171244522 171244562 41 CTGTCTCTGGCCAATGGGAGGTGGTCACTATGCATGAAGAG CTGTCTCTGGCCAATGGGATGTGGTCACTATGCATGAAGAG < 41bp 0.427169452833668 0.754119167472087 NA NA prediction 0.508238334944173 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171244542 chr1:171244541 nonsynonymous SNV 0.710 1 20 hm7G_associated_SNPs_20571 0 0 0 0 1 FMO1 chr1:171244485 3'AG 171244485 Downstream 57bp 19183 chr6 170176742 170176742 1 + G T HNSC 170176743 + 170176723 170176763 41 ACGCTGCGGTCTCGCCAGCGGCAGAACTACCTGCGTATGTG ACGCTGCGGTCTCGCCAGCTGCAGAACTACCTGCGTATGTG < 41bp 0.619739564928936 0.873843548360733 NA NA prediction 0.508207966863595 Functional Gain - ERMARD ENSG00000130023 CDS Human protein_coding chr6:170176743 chr6:170176742 nonsynonymous SNV 0.356 4 20 hm7G_associated_SNPs_20573 0 0 0 0 1 ERMARD chr6:170176769 5'GT 170176769 Upstream 28bp 19184 chr9 71002450 71002450 1 + G T STAD 71002451 + 71002431 71002471 41 TGACTTTCATGCCATCAAGGGTTTGCTGACTGGACCCAGCC TGACTTTCATGCCATCAAGTGTTTGCTGACTGGACCCAGCC < 41bp 0.429182028356936 0.754095690985895 NA NA prediction 0.508191381971789 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71002451 chr9:71002450 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20574 0 0 0 0 2 PGM5 chr9:71002379 3'AG 71002379 Downstream 72bp 19185 chr9 71002450 71002450 1 + G T STAD 71002451 + 71002431 71002471 41 TGACTTTCATGCCATCAAGGGTTTGCTGACTGGACCCAGCC TGACTTTCATGCCATCAAGTGTTTGCTGACTGGACCCAGCC < 41bp 0.429182028356936 0.754095690985895 NA NA prediction 0.508191381971789 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71002451 chr9:71002450 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20574 0 0 0 0 2 PGM5 chr9:71002504 5'GT 71002504 Upstream 55bp 19186 chr5 162940644 162940644 1 + G T SKCM 162940645 + 162940625 162940665 41 CTGCCTCTCAACTTAATGTGGATGCTTCTGGGAATTTAGCA CTGCCTCTCAACTTAATGTTGATGCTTCTGGGAATTTAGCA < 41bp 0.608493962158192 0.862580052770173 NA NA prediction 0.508172181223961 Functional Gain - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162940645 chr5:162940644 synonymous SNV . 0 20 hm7G_associated_SNPs_20575 0 0 1 0 2 MAT2B chr5:162940561 3'AG 162940561 Downstream 84bp 19187 chr5 162940644 162940644 1 + G T SKCM 162940645 + 162940625 162940665 41 CTGCCTCTCAACTTAATGTGGATGCTTCTGGGAATTTAGCA CTGCCTCTCAACTTAATGTTGATGCTTCTGGGAATTTAGCA < 41bp 0.608493962158192 0.862580052770173 NA NA prediction 0.508172181223961 Functional Gain - MAT2B ENSG00000038274 CDS Human protein_coding chr5:162940645 chr5:162940644 synonymous SNV . 0 20 hm7G_associated_SNPs_20575 0 0 1 0 2 MAT2B chr5:162940675 5'GT 162940675 Upstream 32bp 19188 chr20 5843764 5843764 1 + G T LUAD 5843765 + 5843745 5843785 41 GCCAGTCAGAGAAGGAAGAGGATGATGGCCTTCGGAAATCC GCCAGTCAGAGAAGGAAGATGATGATGGCCTTCGGAAATCC < 41bp 0.603529620047227 0.857609554382096 NA NA prediction 0.508159868669736 Functional Gain - C20orf196 ENSG00000171984 CDS Human protein_coding chr20:5843765 chr20:5843764 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_20576 0 0 0 0 1 C20orf196 chr20:5843670 3'AG 5843670 Downstream 95bp 19189 chr16 24805947 24805947 1 + G T UCEC 24805948 + 24805928 24805968 41 CTGGCTGGGAAGAGGAAGAGGATGTGGAGATTGGAATGTGG CTGGCTGGGAAGAGGAAGATGATGTGGAGATTGGAATGTGG < 41bp 0.424916442206369 0.754078735393711 NA NA prediction 0.508157470787421 Functional Gain - TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24805948 chr16:24805947 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20577 0 0 1 0 2 TNRC6A chr16:24805865 3'AG 24805865 Downstream 83bp 19190 chr16 24805947 24805947 1 + G T UCEC 24805948 + 24805928 24805968 41 CTGGCTGGGAAGAGGAAGAGGATGTGGAGATTGGAATGTGG CTGGCTGGGAAGAGGAAGATGATGTGGAGATTGGAATGTGG < 41bp 0.424916442206369 0.754078735393711 NA NA prediction 0.508157470787421 Functional Gain - TNRC6A ENSG00000090905 CDS Human protein_coding chr16:24805948 chr16:24805947 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20577 0 0 1 0 2 TNRC6A chr16:24806040 5'GT 24806040 Upstream 94bp 19191 chrX 57473388 57473388 1 + G T LUSC 57473389 + 57473369 57473409 41 GAAATTTGTAGATTTGCTTGGTGACCATGGGAAACATGTCA GAAATTTGTAGATTTGCTTTGTGACCATGGGAAACATGTCA < 41bp 0.432453998289929 0.754076887992447 NA NA prediction 0.508153775984893 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57473389 chrX:57473388 nonsynonymous SNV 0.913 2 20 hm7G_associated_SNPs_20578 0 0 0 0 2 FAAH2 chrX:57473361 3'AG 57473361 Downstream 28bp 19192 chrX 57473388 57473388 1 + G T LUSC 57473389 + 57473369 57473409 41 GAAATTTGTAGATTTGCTTGGTGACCATGGGAAACATGTCA GAAATTTGTAGATTTGCTTTGTGACCATGGGAAACATGTCA < 41bp 0.432453998289929 0.754076887992447 NA NA prediction 0.508153775984893 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57473389 chrX:57473388 nonsynonymous SNV 0.913 2 20 hm7G_associated_SNPs_20578 0 0 0 0 2 FAAH2 chrX:57473472 5'GT 57473472 Upstream 85bp 19193 chr2 99170738 99170738 1 + G T STAD 99170739 + 99170719 99170759 41 TGTGTGCACCTGCAGACACGGCAGCTGGTCACGGTCTGCGA TGTGTGCACCTGCAGACACTGCAGCTGGTCACGGTCTGCGA < 41bp 0.420157299806781 0.754064341632194 NA NA prediction 0.508128683264387 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99170739 chr2:99170738 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20580 0 0 0 0 1 INPP4A chr2:99170734 3'AG 99170734 Downstream 5bp 19194 chr6 43106643 43106643 1 + G T LUAD 43106644 + 43106624 43106664 41 GCTGGAGGAGGGCAAACCCGGCTACTTGGATTGCCTGACCC GCTGGAGGAGGGCAAACCCTGCTACTTGGATTGCCTGACCC < 41bp 0.401752521252479 0.754040862623546 NA NA prediction 0.508081725247092 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43106644 chr6:43106643 nonsynonymous SNV 0.744 3 20 hm7G_associated_SNPs_20582 0 0 1 0 2 PTK7 chr6:43106587 3'AG 43106587 Downstream 57bp 19195 chr6 43106643 43106643 1 + G T LUAD 43106644 + 43106624 43106664 41 GCTGGAGGAGGGCAAACCCGGCTACTTGGATTGCCTGACCC GCTGGAGGAGGGCAAACCCTGCTACTTGGATTGCCTGACCC < 41bp 0.401752521252479 0.754040862623546 NA NA prediction 0.508081725247092 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43106644 chr6:43106643 nonsynonymous SNV 0.744 3 20 hm7G_associated_SNPs_20582 0 0 1 0 2 PTK7 chr6:43106720 5'GT 43106720 Upstream 78bp 19196 chr15 41145947 41145947 1 + G T LUSC 41145948 + 41145928 41145968 41 CAAGGTGGGTCGCTGCCGGGGCTCTTTCCCACGCTGGTACT CAAGGTGGGTCGCTGCCGGTGCTCTTTCCCACGCTGGTACT < 41bp 0.397182223112739 0.754027809441538 NA NA prediction 0.508055618883075 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41145948 chr15:41145947 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_20584 0 0 0 0 1 SPINT1 chr15:41145909 3'AG 41145909 Downstream 39bp 19197 chr15 49584577 49584577 1 + G T SARC 49584578 + 49584558 49584598 41 AAGTACTGAGGCTGGAGGAGGTGCAGGCTAAACTAGGGATT AAGTACTGAGGCTGGAGGATGTGCAGGCTAAACTAGGGATT < 41bp 0.444230142791522 0.754027309356692 NA NA prediction 0.508054618713384 Functional Gain - GALK2 ENSG00000156958;ENSG00000156958 exonic;splicing Human protein_coding chr15:49584578 chr15:49584577 nonsynonymous SNV 0.605 2 20 hm7G_associated_SNPs_20585 0 0 1 0 1 GALK2 chr15:49584524 3'AG 49584524 Downstream 54bp 19198 chr4 47033989 47033989 1 + G T GBM 47033990 + 47033970 47034010 41 AGTGGACAGATTGCTCAAAGGATATGACATTCGCTTGCGGC AGTGGACAGATTGCTCAAATGATATGACATTCGCTTGCGGC < 41bp 0.429565776546636 0.754004395639534 NA NA prediction 0.508008791279069 Functional Gain - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47033990 chr4:47033989 stopgain 0.997 1 20 hm7G_associated_SNPs_20588 0 0 0 0 2 GABRB1 chr4:47033931 3'AG 47033931 Downstream 59bp 19199 chr4 47033989 47033989 1 + G T GBM 47033990 + 47033970 47034010 41 AGTGGACAGATTGCTCAAAGGATATGACATTCGCTTGCGGC AGTGGACAGATTGCTCAAATGATATGACATTCGCTTGCGGC < 41bp 0.429565776546636 0.754004395639534 NA NA prediction 0.508008791279069 Functional Gain - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47033990 chr4:47033989 stopgain 0.997 1 20 hm7G_associated_SNPs_20588 0 0 0 0 2 GABRB1 chr4:47034022 5'GT 47034022 Upstream 34bp 19200 chr6 41533559 41533559 1 + G T LUAD 41533560 + 41533540 41533580 41 ATCTGGTCAGAATGGCGTGGGCAGCCTCTCTGGGCAAGCCG ATCTGGTCAGAATGGCGTGTGCAGCCTCTCTGGGCAAGCCG < 41bp 0.400273456560533 0.753999429127812 NA NA prediction 0.507998858255624 Functional Gain - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41533560 chr6:41533559 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20589 0 0 1 0 1 FOXP4 chr6:41533483 3'AG 41533483 Downstream 77bp 19201 chr1 54428072 54428072 1 + G T STAD 54428073 + 54428053 54428093 41 AACTGCAAGACAGAGGGCTGGGCTGACCAGGTACTCCAGAT AACTGCAAGACAGAGGGCTTGGCTGACCAGGTACTCCAGAT < 41bp 0.614674891671033 0.868650354414327 NA NA prediction 0.507950925486588 Functional Gain - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54428073 chr1:54428072 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20591 0 0 0 0 1 LRRC42 chr1:54428082 5'GT 54428082 Upstream 11bp 19202 chr17 29857360 29857360 1 + G T LUSC 29857361 + 29857341 29857381 41 TAGGAGAATTATAAGCTGCGGGATCAGAACGACGACTTGAA TAGGAGAATTATAAGCTGCTGGATCAGAACGACGACTTGAA < 41bp 0.618458075500555 0.872431465249047 NA NA prediction 0.507946779496984 Functional Gain - RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29857361 chr17:29857360 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20592 0 0 1 0 1 RAB11FIP4 chr17:29857344 3'AG 29857344 Downstream 17bp 19203 chr2 39185251 39185251 1 + G T CESC 39185252 + 39185232 39185272 41 AGATGCTTCCCCCACTGCAGGTCCTGAGGCTGTCCGTGACA AGATGCTTCCCCCACTGCATGTCCTGAGGCTGTCCGTGACA < 41bp 0.417649912512646 0.753970197810763 NA NA prediction 0.507940395621526 Functional Gain - ARHGEF33 ENSG00000214694 CDS Human protein_coding chr2:39185252 chr2:39185251 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_20593 0 0 0 0 2 ARHGEF33 chr2:39185175 3'AG 39185175 Downstream 77bp 19204 chr2 39185251 39185251 1 + G T CESC 39185252 + 39185232 39185272 41 AGATGCTTCCCCCACTGCAGGTCCTGAGGCTGTCCGTGACA AGATGCTTCCCCCACTGCATGTCCTGAGGCTGTCCGTGACA < 41bp 0.417649912512646 0.753970197810763 NA NA prediction 0.507940395621526 Functional Gain - ARHGEF33 ENSG00000214694 CDS Human protein_coding chr2:39185252 chr2:39185251 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_20593 0 0 0 0 2 ARHGEF33 chr2:39185339 5'GT 39185339 Upstream 89bp 19205 chr4 148453698 148453698 1 + G T ESCA 148453699 + 148453679 148453719 41 GAGTCGTGTTCAGGGAATTGGGATTCCTTTGGTAACTGCCA GAGTCGTGTTCAGGGAATTTGGATTCCTTTGGTAACTGCCA < 41bp 0.422815354448351 0.753966508709381 NA NA prediction 0.507933017418763 Functional Gain - EDNRA ENSG00000151617 CDS Human protein_coding chr4:148453699 chr4:148453698 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20594 0 0 0 0 1 EDNRA chr4:148453658 3'AG 148453658 Downstream 41bp 19206 chr8 11640745 11640745 1 + G T LUSC 11640746 + 11640726 11640766 41 TTGGTGGTGGTGGCTTCCTGGCATTTTATAATTGTCAGTTG TTGGTGGTGGTGGCTTCCTTGCATTTTATAATTGTCAGTTG < 41bp 0.41164302924028 0.753961032577303 NA NA prediction 0.507922065154606 Functional Gain - NEIL2 ENSG00000154328 CDS Human protein_coding chr8:11640746 chr8:11640745 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_20595 0 0 1 0 1 NEIL2 chr8:11640712 3'AG 11640712 Downstream 34bp 19207 chr1 171085403 171085403 1 + G T SARC 171085404 + 171085384 171085424 41 ATGATATTAATGAGAAAATGGAGAAAAAGCGCAAATGGTAA ATGATATTAATGAGAAAATTGAGAAAAAGCGCAAATGGTAA < 41bp 0.589147390490013 0.84310735698559 NA NA prediction 0.507919932991153 Functional Gain - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171085404 chr1:171085403 nonsynonymous SNV 0.549 0 20 hm7G_associated_SNPs_20596 0 0 0 0 2 FMO3 chr1:171085348 3'AG 171085348 Downstream 56bp 19208 chr1 171085403 171085403 1 + G T SARC 171085404 + 171085384 171085424 41 ATGATATTAATGAGAAAATGGAGAAAAAGCGCAAATGGTAA ATGATATTAATGAGAAAATTGAGAAAAAGCGCAAATGGTAA < 41bp 0.589147390490013 0.84310735698559 NA NA prediction 0.507919932991153 Functional Gain - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171085404 chr1:171085403 nonsynonymous SNV 0.549 0 20 hm7G_associated_SNPs_20596 0 0 0 0 2 FMO3 chr1:171085420 5'GT 171085420 Upstream 18bp 19209 chr16 2284882 2284882 1 + G T UCEC 2284883 + 2284863 2284903 41 GCTGCCTGCTGGAGGTGGAGGAGTTGCTGGTGTCTGAGGAC GCTGCCTGCTGGAGGTGGATGAGTTGCTGGTGTCTGAGGAC < 41bp 0.413221620558963 0.753948033056712 NA NA prediction 0.507896066113424 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2284883 chr16:2284882 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20598 0 0 1 0 1 E4F1 chr16:2284860 3'AG 2284860 Downstream 23bp 19210 chr16 20429497 20429497 1 + G T LUSC 20429498 + 20429478 20429518 41 AGGCAGCCAATGTGCTGGGGGGTGCATGCGGCCTGCAGCCT AGGCAGCCAATGTGCTGGGTGGTGCATGCGGCCTGCAGCCT < 41bp 0.627846677351672 0.881783959798726 NA NA prediction 0.507874564894107 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20429498 chr16:20429497 synonymous SNV . 0 20 hm7G_associated_SNPs_20599 0 0 0 0 1 ACSM5 chr16:20429591 5'GT 20429591 Upstream 95bp 19211 chr16 2445873 2445873 1 + G T CESC 2445874 + 2445854 2445894 41 TTTACTGACTTGGAACTGAGGCAGGTAGAGCTGGGCATCTC TTTACTGACTTGGAACTGATGCAGGTAGAGCTGGGCATCTC < 41bp 0.56898342421565 0.822919144094265 NA NA prediction 0.507871439757229 Functional Gain - ABCA17P ENSG00000238098 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:2445874 chr16:2445873 . . 0 20 hm7G_associated_SNPs_20600 0 0 0 0 2 ABCA17P chr16:2445841 3'AG 2445841 Downstream 33bp 19212 chr16 2445873 2445873 1 + G T CESC 2445874 + 2445854 2445894 41 TTTACTGACTTGGAACTGAGGCAGGTAGAGCTGGGCATCTC TTTACTGACTTGGAACTGATGCAGGTAGAGCTGGGCATCTC < 41bp 0.56898342421565 0.822919144094265 NA NA prediction 0.507871439757229 Functional Gain - ABCA17P ENSG00000238098 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:2445874 chr16:2445873 . . 0 20 hm7G_associated_SNPs_20600 0 0 0 0 2 ABCA17P chr16:2445939 5'GT 2445939 Upstream 67bp 19213 chr1 207235977 207235977 1 + G T SKCM 207235978 + 207235958 207235998 41 TCTACAGTGTTTAATCTTGGGGTGTATCGGCGTGAAGCAGT TCTACAGTGTTTAATCTTGTGGTGTATCGGCGTGAAGCAGT < 41bp 0.426656943814631 0.753923045870775 NA NA prediction 0.507846091741549 Functional Gain - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207235978 chr1:207235977 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_20603 0 0 1 0 3 PFKFB2 chr1:207235892 3'AG 207235892 Downstream 86bp 19214 chr1 207235977 207235977 1 + G T SKCM 207235978 + 207235958 207235998 41 TCTACAGTGTTTAATCTTGGGGTGTATCGGCGTGAAGCAGT TCTACAGTGTTTAATCTTGTGGTGTATCGGCGTGAAGCAGT < 41bp 0.426656943814631 0.753923045870775 NA NA prediction 0.507846091741549 Functional Gain - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207235978 chr1:207235977 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_20603 0 0 1 0 3 PFKFB2 chr1:207235965 3'AG 207235965 Downstream 13bp 19215 chr1 207235977 207235977 1 + G T SKCM 207235978 + 207235958 207235998 41 TCTACAGTGTTTAATCTTGGGGTGTATCGGCGTGAAGCAGT TCTACAGTGTTTAATCTTGTGGTGTATCGGCGTGAAGCAGT < 41bp 0.426656943814631 0.753923045870775 NA NA prediction 0.507846091741549 Functional Gain - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207235978 chr1:207235977 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_20603 0 0 1 0 3 PFKFB2 chr1:207236061 5'GT 207236061 Upstream 85bp 19216 chr10 118354340 118354340 1 + G T LUAD 118354341 + 118354321 118354361 41 CCAACAACGTGCGAGTGGTGGGCGCCCAGGTGGCCCAGATG CCAACAACGTGCGAGTGGTTGGCGCCCAGGTGGCCCAGATG < 41bp 0.628612231300029 0.882535236835916 NA NA prediction 0.507846011071774 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354341 chr10:118354340 synonymous SNV . 0 20 hm7G_associated_SNPs_20604 0 0 0 0 2 PNLIPRP1 chr10:118354242 3'AG 118354242 Downstream 99bp 19217 chr10 118354340 118354340 1 + G T LUAD 118354341 + 118354321 118354361 41 CCAACAACGTGCGAGTGGTGGGCGCCCAGGTGGCCCAGATG CCAACAACGTGCGAGTGGTTGGCGCCCAGGTGGCCCAGATG < 41bp 0.628612231300029 0.882535236835916 NA NA prediction 0.507846011071774 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354341 chr10:118354340 synonymous SNV . 0 20 hm7G_associated_SNPs_20604 0 0 0 0 2 PNLIPRP1 chr10:118354376 5'GT 118354376 Upstream 37bp 19218 chr1 23219474 23219474 1 + G T THCA 23219475 + 23219455 23219495 41 ATCTATGTCTTCCAGGTGCGGGCACGCACCGTGGCAGGTTA ATCTATGTCTTCCAGGTGCTGGCACGCACCGTGGCAGGTTA < 41bp 0.413076732238256 0.753912483033039 NA NA prediction 0.507824966066078 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23219475 chr1:23219474 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20606 0 0 0 0 2 EPHB2 chr1:23219377 3'AG 23219377 Downstream 98bp 19219 chr1 23219474 23219474 1 + G T THCA 23219475 + 23219455 23219495 41 ATCTATGTCTTCCAGGTGCGGGCACGCACCGTGGCAGGTTA ATCTATGTCTTCCAGGTGCTGGCACGCACCGTGGCAGGTTA < 41bp 0.413076732238256 0.753912483033039 NA NA prediction 0.507824966066078 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23219475 chr1:23219474 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20606 0 0 0 0 2 EPHB2 chr1:23219539 5'GT 23219539 Upstream 66bp 19220 chr20 18139762 18139762 1 + G T UCEC 18139763 + 18139743 18139783 41 CTGGTGGAGCACCGTGGCAGGTTGCCTCAGCGTGGGAAGTC CTGGTGGAGCACCGTGGCATGTTGCCTCAGCGTGGGAAGTC < 41bp 0.621612666822133 0.875509684293892 NA NA prediction 0.507794034943518 Functional Gain - KAT14 ENSG00000149474 CDS Human protein_coding chr20:18139763 chr20:18139762 nonsynonymous SNV 0.504 4 20 hm7G_associated_SNPs_20608 0 0 1 0 1 KAT14 chr20:18139728 3'AG 18139728 Downstream 35bp 19221 chr8 92145519 92145519 1 + G T ACC 92145520 + 92145500 92145540 41 GCTAGCCAGAAACAACATTGGAGTTTTGCCGGAGGTAAGCA GCTAGCCAGAAACAACATTTGAGTTTTGCCGGAGGTAAGCA < 41bp 0.430377860276468 0.75389243628187 NA NA prediction 0.507784872563739 Functional Gain - LRRC69 ENSG00000214954 CDS Human protein_coding chr8:92145520 chr8:92145519 stopgain 0.048 0 20 hm7G_associated_SNPs_20609 0 0 1 0 1 LRRC69 chr8:92145533 5'GT 92145533 Upstream 15bp 19222 chrX 36103561 36103561 1 + G T LUAD 36103562 + 36103542 36103582 41 GAGTGGAAAAATGCCACCTGGAATTAATTCAAGTCAATCTT GAGTGGAAAAATGCCACCTTGAATTAATTCAAGTCAATCTT < 41bp 0.429660269573429 0.753841213042768 NA NA prediction 0.507682426085537 Functional Gain - CFAP47 ENSG00000176034 CDS Human other chrX:36103562 chrX:36103561 stopgain 0.951 0 20 hm7G_associated_SNPs_20612 0 0 0 0 1 CFAP47 chrX:36103655 5'GT 36103655 Upstream 95bp 19223 chr21 47411960 47411960 1 + G T UCEC 47411961 + 47411941 47411981 41 CGGGGAGGCGGGGAGACCAGGGAGCTCGGGACCATCTGGAG CGGGGAGGCGGGGAGACCATGGAGCTCGGGACCATCTGGAG < 41bp 0.401529261890037 0.753805959061888 NA NA prediction 0.507611918123776 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47411961 chr21:47411960 nonsynonymous SNV 0.003 5 20 hm7G_associated_SNPs_20614 0 0 1 0 2 COL6A1 chr21:47411924 3'AG 47411924 Downstream 37bp 19224 chr21 47411960 47411960 1 + G T UCEC 47411961 + 47411941 47411981 41 CGGGGAGGCGGGGAGACCAGGGAGCTCGGGACCATCTGGAG CGGGGAGGCGGGGAGACCATGGAGCTCGGGACCATCTGGAG < 41bp 0.401529261890037 0.753805959061888 NA NA prediction 0.507611918123776 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47411961 chr21:47411960 nonsynonymous SNV 0.003 5 20 hm7G_associated_SNPs_20614 0 0 1 0 2 COL6A1 chr21:47411986 5'GT 47411986 Upstream 27bp 19225 chr1 11766744 11766744 1 + G T LUAD 11766745 + 11766725 11766765 41 GGGAGCACAAGAGACGCAGGGACAGGTTGAGGCTGCACCAA GGGAGCACAAGAGACGCAGTGACAGGTTGAGGCTGCACCAA < 41bp 0.625878985443269 0.879678195889664 NA NA prediction 0.507598420892791 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11766745 chr1:11766744 nonsynonymous SNV 0.724 2 20 hm7G_associated_SNPs_20616 0 0 0 0 1 DRAXIN chr1:11766766 5'GT 11766766 Upstream 23bp 19226 chr7 21516765 21516765 1 + G T LUAD 21516766 + 21516746 21516786 41 TCCTGTAACTGTAGCAGTTGGAGGAATTGCTAATGCCACGA TCCTGTAACTGTAGCAGTTTGAGGAATTGCTAATGCCACGA < 41bp 0.614616767276113 0.868390245545853 NA NA prediction 0.507546956539479 Functional Gain - SP4 ENSG00000105866 CDS Human protein_coding chr7:21516766 chr7:21516765 stopgain 1.000 1 20 hm7G_associated_SNPs_20617 0 0 0 0 1 SP4 chr7:21516697 3'AG 21516697 Downstream 69bp 19227 chr7 104719371 104719371 1 + G T UCEC 104719372 + 104719352 104719392 41 CAAGGACTTTTGGGAATGAGGCTCGATTCATCAGGCGGTCT CAAGGACTTTTGGGAATGATGCTCGATTCATCAGGCGGTCT < 41bp 0.430034870730832 0.753770476425347 NA NA prediction 0.507540952850694 Functional Gain - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104719372 chr7:104719371 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20618 0 0 1 0 2 KMT2E chr7:104719293 3'AG 104719293 Downstream 79bp 19228 chr7 104719371 104719371 1 + G T UCEC 104719372 + 104719352 104719392 41 CAAGGACTTTTGGGAATGAGGCTCGATTCATCAGGCGGTCT CAAGGACTTTTGGGAATGATGCTCGATTCATCAGGCGGTCT < 41bp 0.430034870730832 0.753770476425347 NA NA prediction 0.507540952850694 Functional Gain - KMT2E ENSG00000005483 CDS Human protein_coding chr7:104719372 chr7:104719371 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20618 0 0 1 0 2 KMT2E chr7:104719410 5'GT 104719410 Upstream 40bp 19229 chr5 52344571 52344571 1 + G T SARC 52344572 + 52344552 52344592 41 TTTGGAAAAATTTGTACAAGGCCTGGATATAGGCCCCACAA TTTGGAAAAATTTGTACAATGCCTGGATATAGGCCCCACAA < 41bp 0.436086373516826 0.753768589356922 NA NA prediction 0.507537178713843 Functional Gain - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52344572 chr5:52344571 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_20619 0 0 1 0 2 ITGA2 chr5:52344473 3'AG 52344473 Downstream 99bp 19230 chr5 52344571 52344571 1 + G T SARC 52344572 + 52344552 52344592 41 TTTGGAAAAATTTGTACAAGGCCTGGATATAGGCCCCACAA TTTGGAAAAATTTGTACAATGCCTGGATATAGGCCCCACAA < 41bp 0.436086373516826 0.753768589356922 NA NA prediction 0.507537178713843 Functional Gain - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52344572 chr5:52344571 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_20619 0 0 1 0 2 ITGA2 chr5:52344600 5'GT 52344600 Upstream 30bp 19231 chr10 118314718 118314718 1 + G T LUSC 118314719 + 118314699 118314739 41 CAGCAGAACCTTGCTTTCAGGGCACACCTGAATTAGTCCGA CAGCAGAACCTTGCTTTCATGGCACACCTGAATTAGTCCGA < 41bp 0.42537526258144 0.753749218551082 NA NA prediction 0.507498437102164 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314719 chr10:118314718 nonsynonymous SNV 0.885 1 20 hm7G_associated_SNPs_20621 0 0 0 0 1 PNLIP chr10:118314809 5'GT 118314809 Upstream 92bp 19232 chr20 42196603 42196603 1 + G T LUSC 42196604 + 42196584 42196624 41 GGGCGTTCTATGCAGTGAAGGTACTACAGAAAAAGTCCATC GGGCGTTCTATGCAGTGAATGTACTACAGAAAAAGTCCATC < 41bp 0.425196258535791 0.753741738404995 NA NA prediction 0.507483476809991 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42196604 chr20:42196603 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20622 0 0 1 2 2 SGK2 chr20:42196556 3'AG 42196556 Downstream 48bp 19233 chr20 42196603 42196603 1 + G T LUSC 42196604 + 42196584 42196624 41 GGGCGTTCTATGCAGTGAAGGTACTACAGAAAAAGTCCATC GGGCGTTCTATGCAGTGAATGTACTACAGAAAAAGTCCATC < 41bp 0.425196258535791 0.753741738404995 NA NA prediction 0.507483476809991 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42196604 chr20:42196603 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20622 0 0 1 2 2 SGK2 chr20:42196639 5'GT 42196639 Upstream 37bp 19234 chr22 27024391 27024391 1 + G T LUSC 27024392 + 27024372 27024412 41 TCCTTCCACGTCCACTCTGGGGCGTAAGTGTATTCAAGGCT TCCTTCCACGTCCACTCTGTGGCGTAAGTGTATTCAAGGCT < 41bp 0.615486272989006 0.869226446330139 NA NA prediction 0.507480346682265 Functional Gain - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27024392 chr22:27024391 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_20623 0 0 0 0 1 CRYBA4 chr22:27024394 5'GT 27024394 Upstream 4bp 19235 chr2 9463317 9463317 1 + G T LUAD 9463318 + 9463298 9463338 41 GATTCGGACTGAAATAAGCGGAGCGGAAATTGCCGAAGAGA GATTCGGACTGAAATAAGCTGAGCGGAAATTGCCGAAGAGA < 41bp 0.421739605257655 0.753737309939382 NA NA prediction 0.507474619878764 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9463318 chr2:9463317 stopgain 0.913 1 20 hm7G_associated_SNPs_20624 0 0 0 0 2 ASAP2 chr2:9463250 3'AG 9463250 Downstream 68bp 19236 chr2 9463317 9463317 1 + G T LUAD 9463318 + 9463298 9463338 41 GATTCGGACTGAAATAAGCGGAGCGGAAATTGCCGAAGAGA GATTCGGACTGAAATAAGCTGAGCGGAAATTGCCGAAGAGA < 41bp 0.421739605257655 0.753737309939382 NA NA prediction 0.507474619878764 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9463318 chr2:9463317 stopgain 0.913 1 20 hm7G_associated_SNPs_20624 0 0 0 0 2 ASAP2 chr2:9463379 5'GT 9463379 Upstream 63bp 19237 chr21 27113930 27113930 1 + G T UCEC 27113931 + 27113911 27113951 41 TGACTAAAAGAGAAGCAGAGGAGCTGATAGAAATTGAGATT TGACTAAAAGAGAAGCAGATGAGCTGATAGAAATTGAGATT < 41bp 0.602288808019661 0.856025488446444 NA NA prediction 0.507473360853566 Functional Gain - GABPA ENSG00000154727 CDS Human protein_coding chr21:27113931 chr21:27113930 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20625 0 0 1 0 2 GABPA chr21:27113884 3'AG 27113884 Downstream 47bp 19238 chr21 27113930 27113930 1 + G T UCEC 27113931 + 27113911 27113951 41 TGACTAAAAGAGAAGCAGAGGAGCTGATAGAAATTGAGATT TGACTAAAAGAGAAGCAGATGAGCTGATAGAAATTGAGATT < 41bp 0.602288808019661 0.856025488446444 NA NA prediction 0.507473360853566 Functional Gain - GABPA ENSG00000154727 CDS Human protein_coding chr21:27113931 chr21:27113930 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20625 0 0 1 0 2 GABPA chr21:27113986 5'GT 27113986 Upstream 57bp 19239 chr2 69207160 69207160 1 + G T UCEC 69207161 + 69207141 69207181 41 ATTGCAAACATGTGTCGTGGGATTCCAACATACATGGCTGA ATTGCAAACATGTGTCGTGTGATTCCAACATACATGGCTGA < 41bp 0.596229781941373 0.849961629719881 NA NA prediction 0.507463695557016 Functional Gain - GKN1 ENSG00000169605 CDS Human protein_coding chr2:69207161 chr2:69207160 nonsynonymous SNV 0.012 3 20 hm7G_associated_SNPs_20626 0 0 0 0 1 GKN1 chr2:69207192 5'GT 69207192 Upstream 33bp 19240 chr4 122734461 122734461 1 + G T UCEC 122734462 + 122734442 122734482 41 CAGCATTTAAAATGGAAAAGGCCCCTATTGATACCTCGGAT CAGCATTTAAAATGGAAAATGCCCCTATTGATACCTCGGAT < 41bp 0.606115896080213 0.85982296038706 NA NA prediction 0.507414128613693 Functional Gain - EXOSC9 ENSG00000123737 CDS Human protein_coding chr4:122734462 chr4:122734461 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_20629 0 0 1 0 1 EXOSC9 chr4:122734389 3'AG 122734389 Downstream 73bp 19241 chr3 45077114 45077114 1 + G T LUSC 45077115 + 45077095 45077135 41 GGACTGCATCTCGCGCGGGGGCACCCTGGGCACCCCTCAGA GGACTGCATCTCGCGCGGGTGCACCCTGGGCACCCCTCAGA < 41bp 0.617714114444211 0.871418835943229 NA NA prediction 0.507409442998037 Functional Gain - CLEC3B ENSG00000163815 CDS Human protein_coding chr3:45077115 chr3:45077114 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_20630 0 0 0 0 1 CLEC3B chr3:45077016 3'AG 45077016 Downstream 99bp 19242 chr1 205041085 205041085 1 + G T LIHC 205041086 + 205041066 205041106 41 CTCCTTCAGATCCGCTACTGGAAAGCTGGGGACAAAGAAGC CTCCTTCAGATCCGCTACTTGAAAGCTGGGGACAAAGAAGC < 41bp 0.417758268846243 0.753647587231072 NA NA prediction 0.507295174462143 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205041086 chr1:205041085 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20632 0 0 0 0 1 CNTN2 chr1:205041075 3'AG 205041075 Downstream 11bp 19243 chr5 161569216 161569216 1 + G T COAD 161569217 + 161569197 161569237 41 TTGATCTGAGCAGAAGAATGGGATACTTTACCATCCAGACC TTGATCTGAGCAGAAGAATTGGATACTTTACCATCCAGACC < 41bp 0.613965017700511 0.867603148975403 NA NA prediction 0.507276262549784 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161569217 chr5:161569216 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_20633 0 0 0 0 1 GABRG2 chr5:161569170 3'AG 161569170 Downstream 47bp 19244 chr1 166990329 166990329 1 + G T HNSC 166990330 + 166990310 166990350 41 TGTTACTTACAGAAGCTAAGGGTTGGGAGTTCAGGATTCTC TGTTACTTACAGAAGCTAATGGTTGGGAGTTCAGGATTCTC < 41bp 0.605233428556894 0.858870452581645 NA NA prediction 0.507274048049502 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166990330 chr1:166990329 nonsynonymous SNV 0.931 3 20 hm7G_associated_SNPs_20634 0 0 0 1 2 MAEL chr1:166990322 3'AG 166990322 Downstream 8bp 19245 chr1 166990329 166990329 1 + G T HNSC 166990330 + 166990310 166990350 41 TGTTACTTACAGAAGCTAAGGGTTGGGAGTTCAGGATTCTC TGTTACTTACAGAAGCTAATGGTTGGGAGTTCAGGATTCTC < 41bp 0.605233428556894 0.858870452581645 NA NA prediction 0.507274048049502 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166990330 chr1:166990329 nonsynonymous SNV 0.931 3 20 hm7G_associated_SNPs_20634 0 0 0 1 2 MAEL chr1:166990397 5'GT 166990397 Upstream 69bp 19246 chr5 96350769 96350769 1 + G T LUAD 96350770 + 96350750 96350790 41 ATAACCTCCTTGAAAAACTGGGATACATGGATCTGGCCTCA ATAACCTCCTTGAAAAACTTGGATACATGGATCTGGCCTCA < 41bp 0.619242606533174 0.872866947629251 NA NA prediction 0.507248682192155 Functional Gain - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96350770 chr5:96350769 synonymous SNV . 0 20 hm7G_associated_SNPs_20636 0 0 1 0 1 LNPEP chr5:96350799 5'GT 96350799 Upstream 31bp 19247 chr1 226252156 226252156 1 + G T GBM 226252157 + 226252137 226252177 41 AGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTA AGTGCGCCCTCTACTGGAGTGGTGAAGAAACCTCATCGTTA < 41bp 0.603239352853826 0.856856827941472 NA NA prediction 0.507234950175293 Functional Gain - H3F3A ENSG00000163041 CDS Human protein_coding chr1:226252157 chr1:226252156 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20637 0 0 1 0 1 H3F3A chr1:226252180 5'GT 226252180 Upstream 25bp 19248 chr9 133932444 133932444 1 + G T LUAD 133932445 + 133932425 133932465 41 CTGTGAATCCTGTGCTCCGGGATACAAGAGGGAGATGCCAC CTGTGAATCCTGTGCTCCGTGATACAAGAGGGAGATGCCAC < 41bp 0.632060253090427 0.88567574052303 NA NA prediction 0.507230974865206 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133932445 chr9:133932444 stopgain 0.988 1 20 hm7G_associated_SNPs_20638 0 0 0 0 1 LAMC3 chr9:133932534 5'GT 133932534 Upstream 91bp 19249 chr20 47648639 47648639 1 + G T LIHC 47648640 + 47648620 47648660 41 GTGAATTCTGAGAGCCATCGGGAGGCCTGGACAAGTCTCTT GTGAATTCTGAGAGCCATCTGGAGGCCTGGACAAGTCTCTT < 41bp 0.431447336644865 0.753603745035301 NA NA prediction 0.507207490070603 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47648640 chr20:47648639 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20639 0 0 0 0 1 ARFGEF2 chr20:47648703 5'GT 47648703 Upstream 65bp 19250 chr11 63586454 63586454 1 + G T LUAD 63586455 + 63586435 63586475 41 GCAGAAGGAGGCCTTCCCCGGGCGGAGAGCCCCTCTCCAGG GCAGAAGGAGGCCTTCCCCTGGCGGAGAGCCCCTCTCCAGG < 41bp 0.415904640506791 0.753593635123775 NA NA prediction 0.50718727024755 Functional Gain - C11orf84 ENSG00000168005 CDS Human protein_coding chr11:63586455 chr11:63586454 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_20640 0 0 1 0 1 C11orf84 chr11:63586474 5'GT 63586474 Upstream 21bp 19251 chr20 17341186 17341186 1 + G T STAD 17341187 + 17341167 17341207 41 CCTGTACCAGATCAATACTGGGCAAGCTGATGGCACTCCTG CCTGTACCAGATCAATACTTGGCAAGCTGATGGCACTCCTG < 41bp 0.41878391006344 0.753576571944305 NA NA prediction 0.50715314388861 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17341187 chr20:17341186 nonsynonymous SNV 0.954 4 20 hm7G_associated_SNPs_20641 0 0 0 0 2 PCSK2 chr20:17341177 3'AG 17341177 Downstream 10bp 19252 chr20 17341186 17341186 1 + G T STAD 17341187 + 17341167 17341207 41 CCTGTACCAGATCAATACTGGGCAAGCTGATGGCACTCCTG CCTGTACCAGATCAATACTTGGCAAGCTGATGGCACTCCTG < 41bp 0.41878391006344 0.753576571944305 NA NA prediction 0.50715314388861 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17341187 chr20:17341186 nonsynonymous SNV 0.954 4 20 hm7G_associated_SNPs_20641 0 0 0 0 2 PCSK2 chr20:17341285 5'GT 17341285 Upstream 100bp 19253 chr2 118579587 118579587 1 + G T UCEC 118579588 + 118579568 118579608 41 AGCACAGAAACTTGGTAATGGGATCAACATCATTGTGGCCA AGCACAGAAACTTGGTAATTGGATCAACATCATTGTGGCCA < 41bp 0.594896819608198 0.848461392238265 NA NA prediction 0.507129145260135 Functional Gain - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579588 chr2:118579587 nonsynonymous SNV 0.838 4 20 hm7G_associated_SNPs_20643 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 51bp 19254 chr11 63974949 63974949 1 + G T LUAD 63974950 + 63974930 63974970 41 GTCACCCTGCGGGTCACTGGGGAGTCGCACATCGGCGGGGT GTCACCCTGCGGGTCACTGTGGAGTCGCACATCGGCGGGGT < 41bp 0.628571427963902 0.882129087820742 NA NA prediction 0.507115319713681 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63974950 chr11:63974949 nonsynonymous SNV 0.978 2 20 hm7G_associated_SNPs_20644 0 0 0 0 1 FERMT3 chr11:63974996 5'GT 63974996 Upstream 48bp 19255 chr12 100904588 100904588 1 + G T COAD 100904589 + 100904569 100904609 41 ACAAGTGGCAGGTCCTCTGGGACAGAACCTGGAAGTGGAAC ACAAGTGGCAGGTCCTCTGTGACAGAACCTGGAAGTGGAAC < 41bp 0.609882058952448 0.863435787076858 NA NA prediction 0.507107456248819 Functional Gain - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904589 chr12:100904588 stopgain 0.956 0 20 hm7G_associated_SNPs_20645 0 0 1 0 1 NR1H4 chr12:100904556 3'AG 100904556 Downstream 33bp 19256 chr8 91962089 91962089 1 + G T UCEC 91962090 + 91962070 91962110 41 ACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAAT ACATGATCTATGAGTTCTGTGAGAATAGTAGTGTATGGAAT < 41bp 0.590467900802008 0.844007580264422 NA NA prediction 0.507079358924828 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91962090 chr8:91962089 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20649 0 0 0 0 2 NECAB1 chr8:91962035 3'AG 91962035 Downstream 55bp 19257 chr8 91962089 91962089 1 + G T UCEC 91962090 + 91962070 91962110 41 ACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAAT ACATGATCTATGAGTTCTGTGAGAATAGTAGTGTATGGAAT < 41bp 0.590467900802008 0.844007580264422 NA NA prediction 0.507079358924828 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91962090 chr8:91962089 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20649 0 0 0 0 2 NECAB1 chr8:91962112 5'GT 91962112 Upstream 24bp 19258 chr14 58666950 58666950 1 + G T UCEC 58666951 + 58666931 58666971 41 CTACCATGCCGCTCTACGAGGGCCTGGGGAGCGGCGGGGAG CTACCATGCCGCTCTACGATGGCCTGGGGAGCGGCGGGGAG < 41bp 0.600055090099679 0.853587573585358 NA NA prediction 0.507064966971358 Functional Gain - ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58666951 chr14:58666950 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_20650 0 0 1 0 1 ACTR10 chr14:58667012 5'GT 58667012 Upstream 63bp 19259 chr9 71998549 71998549 1 + G T STAD 71998550 + 71998530 71998570 41 AAGTCGCTTTTCCTAGGATGGTTGGTCCTGATGTTATTCCC AAGTCGCTTTTCCTAGGATTGTTGGTCCTGATGTTATTCCC < 41bp 0.427154097469642 0.753525544853412 NA NA prediction 0.507051089706825 Functional Gain - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:71998550 chr9:71998549 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_20651 0 0 0 0 1 FAM189A2 chr9:71998546 3'AG 71998546 Downstream 4bp 19260 chr12 69742245 69742245 1 + G T STAD 69742246 + 69742226 69742266 41 CTGTTACGGTCCAGGGCAAGGTCTTTGAAAGGTGTGAGTTG CTGTTACGGTCCAGGGCAATGTCTTTGAAAGGTGTGAGTTG < 41bp 0.593066657659342 0.846586334439354 NA NA prediction 0.507039353560025 Functional Gain - LYZ ENSG00000090382 CDS Human protein_coding chr12:69742246 chr12:69742245 nonsynonymous SNV 0.345 5 20 hm7G_associated_SNPs_20652 0 0 1 0 1 LYZ chr12:69742324 5'GT 69742324 Upstream 80bp 19261 chr9 131748946 131748946 1 + G T UCEC 131748947 + 131748927 131748967 41 TACAACTCTCATGGAGTGAGGGAACAGATTGGTAAGGACAG TACAACTCTCATGGAGTGATGGAACAGATTGGTAAGGACAG < 41bp 0.620057706142412 0.873531809735096 NA NA prediction 0.506948207185368 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131748947 chr9:131748946 nonsynonymous SNV 0.902 4 20 hm7G_associated_SNPs_20655 0 0 1 0 1 NUP188 chr9:131748957 5'GT 131748957 Upstream 12bp 19262 chr2 231265703 231265703 1 + G T rs370724212 231265704 + 231265684 231265724 41 GCATCTTCTGCAGGATGAAGGAGTCTCCGGGAAGCCAACAG GCATCTTCTGCAGGATGAATGAGTCTCCGGGAAGCCAACAG < 41bp 0.419639056710673 0.753473632428232 NA NA prediction 0.506947264856464 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231265704 chr2:231265703 nonsynonymous SNV 0.117 2 20 hm7G_associated_SNPs_20656 0 0 0 1 2 SP140L chr2:231265670 3'AG 231265670 Downstream 34bp 19263 chr2 231265703 231265703 1 + G T rs370724212 231265704 + 231265684 231265724 41 GCATCTTCTGCAGGATGAAGGAGTCTCCGGGAAGCCAACAG GCATCTTCTGCAGGATGAATGAGTCTCCGGGAAGCCAACAG < 41bp 0.419639056710673 0.753473632428232 NA NA prediction 0.506947264856464 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231265704 chr2:231265703 nonsynonymous SNV 0.117 2 20 hm7G_associated_SNPs_20656 0 0 0 1 2 SP140L chr2:231265778 5'GT 231265778 Upstream 76bp 19264 chr5 156817650 156817650 1 + G T UCEC 156817651 + 156817631 156817671 41 AAAAGTGCAGAGGCAGGACGGGAAGGATGAAATCATTAAGA AAAAGTGCAGAGGCAGGACTGGAAGGATGAAATCATTAAGA < 41bp 0.421427747326323 0.753449316903127 NA NA prediction 0.506898633806255 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156817651 chr5:156817650 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_20659 0 0 0 0 1 CYFIP2 chr5:156817676 5'GT 156817676 Upstream 27bp 19265 chr1 100336081 100336081 1 + G T LUAD 100336082 + 100336062 100336102 41 CTCCTGTGATGTTGCAGAAGGGAAATACAAAGAAAAGGGAA CTCCTGTGATGTTGCAGAATGGAAATACAAAGAAAAGGGAA < 41bp 0.604614559844018 0.858046334023153 NA NA prediction 0.50686354835827 Functional Gain - AGL ENSG00000162688 CDS Human protein_coding chr1:100336082 chr1:100336081 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20660 0 0 0 0 1 AGL chr1:100336137 5'GT 100336137 Upstream 57bp 19266 chr11 1464775 1464775 1 + G T ACC 1464776 + 1464756 1464796 41 TGCTGGAGAAGGTGAAGCGGGGCGTGTTCCACATGCCGCAC TGCTGGAGAAGGTGAAGCGTGGCGTGTTCCACATGCCGCAC < 41bp 0.406058347774718 0.753426955375287 NA NA prediction 0.506853910750574 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1464776 chr11:1464775 synonymous SNV . 0 20 hm7G_associated_SNPs_20661 0 0 0 0 2 BRSK2 chr11:1464719 3'AG 1464719 Downstream 57bp 19267 chr11 1464775 1464775 1 + G T ACC 1464776 + 1464756 1464796 41 TGCTGGAGAAGGTGAAGCGGGGCGTGTTCCACATGCCGCAC TGCTGGAGAAGGTGAAGCGTGGCGTGTTCCACATGCCGCAC < 41bp 0.406058347774718 0.753426955375287 NA NA prediction 0.506853910750574 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1464776 chr11:1464775 synonymous SNV . 0 20 hm7G_associated_SNPs_20661 0 0 0 0 2 BRSK2 chr11:1464865 5'GT 1464865 Upstream 91bp 19268 chr2 209217489 209217489 1 + G T LIHC 209217490 + 209217470 209217510 41 CATGGAAAATCTTTTCTACGGGAGAAAGATGGCACAGGTAA CATGGAAAATCTTTTCTACTGGAGAAAGATGGCACAGGTAA < 41bp 0.444391729577494 0.753418469049407 NA NA prediction 0.506836938098814 Functional Gain - PIKFYVE ENSG00000115020 CDS Human protein_coding chr2:209217490 chr2:209217489 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20663 0 0 1 0 1 PIKFYVE chr2:209217506 5'GT 209217506 Upstream 18bp 19269 chr17 73565397 73565397 1 + G T STAD 73565398 + 73565378 73565418 41 ACCTGGCTGTGGCAGGCACGGCAGGGCAGGTAGCAGGCTGG ACCTGGCTGTGGCAGGCACTGCAGGGCAGGTAGCAGGCTGG < 41bp 0.629557562147242 0.882972083184431 NA NA prediction 0.506829042074378 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73565398 chr17:73565397 synonymous SNV . 0 20 hm7G_associated_SNPs_20664 0 0 1 0 2 LLGL2 chr17:73565302 3'AG 73565302 Downstream 96bp 19270 chr17 73565397 73565397 1 + G T STAD 73565398 + 73565378 73565418 41 ACCTGGCTGTGGCAGGCACGGCAGGGCAGGTAGCAGGCTGG ACCTGGCTGTGGCAGGCACTGCAGGGCAGGTAGCAGGCTGG < 41bp 0.629557562147242 0.882972083184431 NA NA prediction 0.506829042074378 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73565398 chr17:73565397 synonymous SNV . 0 20 hm7G_associated_SNPs_20664 0 0 1 0 2 LLGL2 chr17:73565406 5'GT 73565406 Upstream 10bp 19271 chr1 12157231 12157231 1 + G T LUAD 12157232 + 12157212 12157252 41 GTGAGCCTGACTACTACCTGGATGAGGCCGACCGCTGTACA GTGAGCCTGACTACTACCTTGATGAGGCCGACCGCTGTACA < 41bp 0.403427799362885 0.753394800390618 NA NA prediction 0.506789600781235 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12157232 chr1:12157231 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_20665 0 0 0 0 2 TNFRSF8 chr1:12157158 3'AG 12157158 Downstream 74bp 19272 chr1 12157231 12157231 1 + G T LUAD 12157232 + 12157212 12157252 41 GTGAGCCTGACTACTACCTGGATGAGGCCGACCGCTGTACA GTGAGCCTGACTACTACCTTGATGAGGCCGACCGCTGTACA < 41bp 0.403427799362885 0.753394800390618 NA NA prediction 0.506789600781235 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12157232 chr1:12157231 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_20665 0 0 0 0 2 TNFRSF8 chr1:12157274 5'GT 12157274 Upstream 44bp 19273 chr7 19184548 19184548 1 + G T COAD 19184549 + 19184529 19184569 41 TGAAGGAGATATAGACGATGGCCAGGCGGAGGGTCTCGATC TGAAGGAGATATAGACGATTGCCAGGCGGAGGGTCTCGATC < 41bp 0.607504635820912 0.860898001162398 NA NA prediction 0.506786730682972 Functional Gain - FERD3L ENSG00000146618 CDS Human protein_coding chr7:19184549 chr7:19184548 synonymous SNV . 0 20 hm7G_associated_SNPs_20666 0 0 0 0 1 FERD3L chr7:19184510 3'AG 19184510 Downstream 39bp 19274 chr16 3452349 3452349 1 + G T UCEC 3452350 + 3452330 3452370 41 GATGTCCAATGAGCAGCAAGGAGATTGTGACCCTCGTGGAA GATGTCCAATGAGCAGCAATGAGATTGTGACCCTCGTGGAA < 41bp 0.429012359285604 0.753391782195453 NA NA prediction 0.506783564390906 Functional Gain - ZNF174 ENSG00000103343 CDS Human protein_coding chr16:3452350 chr16:3452349 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20667 0 0 1 0 1 ZNF174 chr16:3452406 5'GT 3452406 Upstream 58bp 19275 chr20 2604918 2604918 1 + G T LUSC 2604919 + 2604899 2604939 41 GTCCTCTCCTTTTTCCAGTGGGAAAAACAGAATGTACGATG GTCCTCTCCTTTTTCCAGTTGGAAAAACAGAATGTACGATG < 41bp 0.42928358697076 0.753389553770613 NA NA prediction 0.506779107541227 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2604919 chr20:2604918 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_20668 0 0 0 0 1 TMC2 chr20:2604917 3'AG 2604917 Downstream 2bp 19276 chr2 228162445 228162445 1 + G T STAD 228162446 + 228162426 228162466 41 GCCTCCCGGGCAGAAAAGGGGCCATGGGAGATGCTGGACCT GCCTCCCGGGCAGAAAAGGTGCCATGGGAGATGCTGGACCT < 41bp 0.421610058659251 0.753389329407741 NA NA prediction 0.506778658815482 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228162446 chr2:228162445 synonymous SNV . 0 20 hm7G_associated_SNPs_20669 0 0 0 0 1 COL4A3 chr2:228162390 3'AG 228162390 Downstream 56bp 19277 chr15 48434324 48434324 1 + G T HNSC 48434325 + 48434305 48434345 41 TAAAACTGCATTTATAAATGGATCAGCTCCTGCAGAAGTAA TAAAACTGCATTTATAAATTGATCAGCTCCTGCAGAAGTAA < 41bp 0.461015620935872 0.753381338870432 NA NA prediction 0.506762677740864 Functional Gain - SLC24A5 ENSG00000188467 CDS Human protein_coding chr15:48434325 chr15:48434324 stopgain 0.990 0 20 hm7G_associated_SNPs_20671 0 0 0 0 1 SLC24A5 chr15:48434226 3'AG 48434226 Downstream 99bp 19278 chr19 15756607 15756607 1 + G T UCS 15756608 + 15756588 15756628 41 TATGTGCTGCTGGTGGGTGGGGCCCTGGCACGCAATCGTCC TATGTGCTGCTGGTGGGTGTGGCCCTGGCACGCAATCGTCC < 41bp 0.427330853413547 0.753375886324968 NA NA prediction 0.506751772649936 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15756608 chr19:15756607 nonsynonymous SNV 0.192 4 20 hm7G_associated_SNPs_20672 0 0 0 0 2 CYP4F3 chr19:15756529 3'AG 15756529 Downstream 79bp 19279 chr19 15756607 15756607 1 + G T UCS 15756608 + 15756588 15756628 41 TATGTGCTGCTGGTGGGTGGGGCCCTGGCACGCAATCGTCC TATGTGCTGCTGGTGGGTGTGGCCCTGGCACGCAATCGTCC < 41bp 0.427330853413547 0.753375886324968 NA NA prediction 0.506751772649936 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15756608 chr19:15756607 nonsynonymous SNV 0.192 4 20 hm7G_associated_SNPs_20672 0 0 0 0 2 CYP4F3 chr19:15756673 5'GT 15756673 Upstream 67bp 19280 chr17 73089740 73089740 1 + G T LUAD 73089741 + 73089721 73089761 41 GGCAGCAGAGGATGCCCCAGGCCCTGGAGCGTGCAGATGGC GGCAGCAGAGGATGCCCCATGCCCTGGAGCGTGCAGATGGC < 41bp 0.407347350520264 0.753375545652861 NA NA prediction 0.506751091305722 Functional Gain - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73089741 chr17:73089740 nonsynonymous SNV 0.497 0 20 hm7G_associated_SNPs_20673 0 0 0 0 1 SLC16A5 chr17:73089684 3'AG 73089684 Downstream 57bp 19281 chr20 61598073 61598073 1 + G T LUAD 61598074 + 61598054 61598094 41 GGTGTGGCCAACACAGCCGGGGCCTTGGCAGGTGAGGGGCG GGTGTGGCCAACACAGCCGTGGCCTTGGCAGGTGAGGGGCG < 41bp 0.609952035995164 0.863316620616536 NA NA prediction 0.506729169242744 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61598074 chr20:61598073 nonsynonymous SNV 0.749 4 20 hm7G_associated_SNPs_20674 0 0 1 0 2 SLC17A9 chr20:61598055 3'AG 61598055 Downstream 19bp 19282 chr20 61598073 61598073 1 + G T LUAD 61598074 + 61598054 61598094 41 GGTGTGGCCAACACAGCCGGGGCCTTGGCAGGTGAGGGGCG GGTGTGGCCAACACAGCCGTGGCCTTGGCAGGTGAGGGGCG < 41bp 0.609952035995164 0.863316620616536 NA NA prediction 0.506729169242744 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61598074 chr20:61598073 nonsynonymous SNV 0.749 4 20 hm7G_associated_SNPs_20674 0 0 1 0 2 SLC17A9 chr20:61598084 5'GT 61598084 Upstream 12bp 19283 chr10 82331325 82331325 1 + G T UCEC 82331326 + 82331306 82331346 41 TGGAGGAACGCATCCACGAGGAATTCAAGGTGGGCCAGCGC TGGAGGAACGCATCCACGATGAATTCAAGGTGGGCCAGCGC < 41bp 0.623924515485176 0.877270606521156 NA NA prediction 0.506692182071959 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82331326 chr10:82331325 nonsynonymous SNV 0.958 3 20 hm7G_associated_SNPs_20676 0 0 0 0 1 SH2D4B chr10:82331334 5'GT 82331334 Upstream 10bp 19284 chr16 21629371 21629371 1 + G T SARC 21629372 + 21629352 21629392 41 CTTTCTGAAACTATGATATGGCAGCTTCAGAAAAAGAAATA CTTTCTGAAACTATGATATTGCAGCTTCAGAAAAAGAAATA < 41bp 0.435057594659841 0.753339543597905 NA NA prediction 0.50667908719581 Functional Gain - METTL9 ENSG00000197006 CDS Human protein_coding chr16:21629372 chr16:21629371 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20677 0 0 1 0 1 METTL9 chr16:21629395 5'GT 21629395 Upstream 25bp 19285 chr12 41966190 41966190 1 + G T HNSC 41966191 + 41966171 41966211 41 AAAGCAAGAAGAAGAAGAAGGCACAACAGACACTGCAACAT AAAGCAAGAAGAAGAAGAATGCACAACAGACACTGCAACAT < 41bp 0.598238515482861 0.85155482170161 NA NA prediction 0.506632612437497 Functional Gain - PDZRN4 ENSG00000165966 CDS Human protein_coding chr12:41966191 chr12:41966190 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20678 0 0 0 0 1 PDZRN4 chr12:41966166 3'AG 41966166 Downstream 25bp 19286 chr4 113347690 113347690 1 + G T HNSC 113347691 + 113347671 113347711 41 ATTTGGCACTTCCTCAGCCGGATAAAAAGGTGGTTTGTCTA ATTTGGCACTTCCTCAGCCTGATAAAAAGGTGGTTTGTCTA < 41bp 0.440982720427702 0.753305180343333 NA NA prediction 0.506610360686667 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113347691 chr4:113347690 synonymous SNV . 0 20 hm7G_associated_SNPs_20679 0 0 0 0 2 ALPK1 chr4:113347623 3'AG 113347623 Downstream 68bp 19287 chr4 113347690 113347690 1 + G T HNSC 113347691 + 113347671 113347711 41 ATTTGGCACTTCCTCAGCCGGATAAAAAGGTGGTTTGTCTA ATTTGGCACTTCCTCAGCCTGATAAAAAGGTGGTTTGTCTA < 41bp 0.440982720427702 0.753305180343333 NA NA prediction 0.506610360686667 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113347691 chr4:113347690 synonymous SNV . 0 20 hm7G_associated_SNPs_20679 0 0 0 0 2 ALPK1 chr4:113347699 5'GT 113347699 Upstream 10bp 19288 chr17 12883427 12883427 1 + G T UCEC 12883428 + 12883408 12883448 41 TGCACAGAAAGGAAGTCCAGGCTCCAGCCAGGGCACAGCCT TGCACAGAAAGGAAGTCCATGCTCCAGCCAGGGCACAGCCT < 41bp 0.630370858756098 0.883664360609689 NA NA prediction 0.506587003707182 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12883428 chr17:12883427 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_20680 0 0 0 0 1 ARHGAP44 chr17:12883375 3'AG 12883375 Downstream 53bp 19289 chr20 47691381 47691381 1 + G T CESC 47691382 + 47691362 47691402 41 CATAAGGAGAGATTTGGAAGGATCTGGTGTGTATCTTGGTT CATAAGGAGAGATTTGGAATGATCTGGTGTGTATCTTGGTT < 41bp 0.60078983343284 0.854076358797457 NA NA prediction 0.506573050729234 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47691382 chr20:47691381 stopgain 1.000 1 20 hm7G_associated_SNPs_20682 0 0 1 0 2 CSE1L chr20:47691322 3'AG 47691322 Downstream 60bp 19290 chr20 47691381 47691381 1 + G T CESC 47691382 + 47691362 47691402 41 CATAAGGAGAGATTTGGAAGGATCTGGTGTGTATCTTGGTT CATAAGGAGAGATTTGGAATGATCTGGTGTGTATCTTGGTT < 41bp 0.60078983343284 0.854076358797457 NA NA prediction 0.506573050729234 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47691382 chr20:47691381 stopgain 1.000 1 20 hm7G_associated_SNPs_20682 0 0 1 0 2 CSE1L chr20:47691387 5'GT 47691387 Upstream 7bp 19291 chr1 113638907 113638907 1 + G T LIHC 113638908 + 113638888 113638928 41 TTGTGGGTCTGAGCTTATTGGAGAGATTGAATTTAGGAGAC TTGTGGGTCTGAGCTTATTTGAGAGATTGAATTTAGGAGAC < 41bp 0.418789720028725 0.753285664303391 NA NA prediction 0.506571328606781 Functional Gain - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113638908 chr1:113638907 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20683 0 0 1 0 2 LRIG2 chr1:113638844 3'AG 113638844 Downstream 64bp 19292 chr1 113638907 113638907 1 + G T LIHC 113638908 + 113638888 113638928 41 TTGTGGGTCTGAGCTTATTGGAGAGATTGAATTTAGGAGAC TTGTGGGTCTGAGCTTATTTGAGAGATTGAATTTAGGAGAC < 41bp 0.418789720028725 0.753285664303391 NA NA prediction 0.506571328606781 Functional Gain - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113638908 chr1:113638907 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20683 0 0 1 0 2 LRIG2 chr1:113638987 5'GT 113638987 Upstream 81bp 19293 chr12 69145871 69145871 1 + G T LUAD 69145872 + 69145852 69145892 41 TGCAGCTGCTGTACTACCAGGCTCCGATGTCATCTGCCATG TGCAGCTGCTGTACTACCATGCTCCGATGTCATCTGCCATG < 41bp 0.622386583835145 0.875669931252329 NA NA prediction 0.506566694834369 Functional Gain - SLC35E3 ENSG00000175782 CDS Human protein_coding chr12:69145872 chr12:69145871 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_20684 0 0 1 0 2 SLC35E3 chr12:69145812 3'AG 69145812 Downstream 60bp 19294 chr12 69145871 69145871 1 + G T LUAD 69145872 + 69145852 69145892 41 TGCAGCTGCTGTACTACCAGGCTCCGATGTCATCTGCCATG TGCAGCTGCTGTACTACCATGCTCCGATGTCATCTGCCATG < 41bp 0.622386583835145 0.875669931252329 NA NA prediction 0.506566694834369 Functional Gain - SLC35E3 ENSG00000175782 CDS Human protein_coding chr12:69145872 chr12:69145871 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_20684 0 0 1 0 2 SLC35E3 chr12:69145970 5'GT 69145970 Upstream 100bp 19295 chr11 20398222 20398222 1 + G T UCEC 20398223 + 20398203 20398243 41 CAACTTGCTATCCTCTAAAGGAGCTGATAAATCAAGCAATT CAACTTGCTATCCTCTAAATGAGCTGATAAATCAAGCAATT < 41bp 0.429189026772784 0.753281563351188 NA NA prediction 0.506563126702377 Functional Gain - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20398223 chr11:20398222 stopgain 0.868 1 20 hm7G_associated_SNPs_20685 0 0 1 0 2 HTATIP2 chr11:20398126 3'AG 20398126 Downstream 97bp 19296 chr11 20398222 20398222 1 + G T UCEC 20398223 + 20398203 20398243 41 CAACTTGCTATCCTCTAAAGGAGCTGATAAATCAAGCAATT CAACTTGCTATCCTCTAAATGAGCTGATAAATCAAGCAATT < 41bp 0.429189026772784 0.753281563351188 NA NA prediction 0.506563126702377 Functional Gain - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20398223 chr11:20398222 stopgain 0.868 1 20 hm7G_associated_SNPs_20685 0 0 1 0 2 HTATIP2 chr11:20398263 5'GT 20398263 Upstream 42bp 19297 chr11 27680061 27680061 1 - C A UCEC 27680060 - 27680040 27680080 41 CATACTTTGGTTGCATGAAGGCTGCCCCCATGAAAGAAGCA CATACTTTGGTTGCATGAATGCTGCCCCCATGAAAGAAGCA < 41bp 0.547964613809183 0.801246022107726 NA NA prediction 0.506562816597087 Functional Gain - BDNF ENSG00000176697 CDS Human protein_coding chr11:27680060 chr11:27680061 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20686 0 0 0 0 1 BDNF chr11:27680132 3'AG 27680132 Downstream 72bp 19298 chr2 191227411 191227411 1 + G T STAD 191227412 + 191227392 191227432 41 AATGAGTTTACTAATGACTGGGGTAAGTATAAGAATCTTAA AATGAGTTTACTAATGACTTGGGTAAGTATAAGAATCTTAA < 41bp 0.596773640082393 0.85005078274994 NA NA prediction 0.506554285335093 Functional Gain - INPP1 ENSG00000151689 CDS Human protein_coding chr2:191227412 chr2:191227411 nonsynonymous SNV 0.827 0 20 hm7G_associated_SNPs_20687 0 0 0 0 2 INPP1 chr2:191227353 3'AG 191227353 Downstream 59bp 19299 chr2 191227411 191227411 1 + G T STAD 191227412 + 191227392 191227432 41 AATGAGTTTACTAATGACTGGGGTAAGTATAAGAATCTTAA AATGAGTTTACTAATGACTTGGGTAAGTATAAGAATCTTAA < 41bp 0.596773640082393 0.85005078274994 NA NA prediction 0.506554285335093 Functional Gain - INPP1 ENSG00000151689 CDS Human protein_coding chr2:191227412 chr2:191227411 nonsynonymous SNV 0.827 0 20 hm7G_associated_SNPs_20687 0 0 0 0 2 INPP1 chr2:191227413 5'GT 191227413 Upstream 3bp 19300 chr13 39612779 39612779 1 + G T SKCM 39612780 + 39612760 39612800 41 TGGCTTCCCGTCTGGTCATGGCGAGATTCTGGGTCTGCGTA TGGCTTCCCGTCTGGTCATTGCGAGATTCTGGGTCTGCGTA < 41bp 0.432665236480757 0.753274927087243 NA NA prediction 0.506549854174487 Functional Gain - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39612780 chr13:39612779 nonsynonymous SNV 0.914 2 20 hm7G_associated_SNPs_20689 0 0 1 0 1 NHLRC3 chr13:39612860 5'GT 39612860 Upstream 82bp 19301 chr17 12656601 12656601 1 + G T LUAD 12656602 + 12656582 12656622 41 CTTTCTGCCCTCATCCTCCGGGGCCCAGGGAGAAGGGCACA CTTTCTGCCCTCATCCTCCTGGGCCCAGGGAGAAGGGCACA < 41bp 0.62390002587743 0.877174543707834 NA NA prediction 0.506549035660808 Functional Gain - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12656602 chr17:12656601 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_20690 0 0 0 0 1 MYOCD chr17:12656663 5'GT 12656663 Upstream 63bp 19302 chr8 28837590 28837590 1 + G T UCEC 28837591 + 28837571 28837611 41 TCTTCTGTTTTTGTTAGGAGGGACAGCAGTGTGATAAAAGA TCTTCTGTTTTTGTTAGGATGGACAGCAGTGTGATAAAAGA < 41bp 0.603806661864664 0.857074577518405 NA NA prediction 0.506535831307482 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28837591 chr8:28837590 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20691 0 0 1 0 2 HMBOX1 chr8:28837588 3'AG 28837588 Downstream 3bp 19303 chr8 28837590 28837590 1 + G T UCEC 28837591 + 28837571 28837611 41 TCTTCTGTTTTTGTTAGGAGGGACAGCAGTGTGATAAAAGA TCTTCTGTTTTTGTTAGGATGGACAGCAGTGTGATAAAAGA < 41bp 0.603806661864664 0.857074577518405 NA NA prediction 0.506535831307482 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28837591 chr8:28837590 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20691 0 0 1 0 2 HMBOX1 chr8:28837673 5'GT 28837673 Upstream 84bp 19304 chrX 84520162 84520162 1 + G T LUAD 84520163 + 84520143 84520183 41 AGAGAGTGAGTACACCAGTGGACATTCAGTAGCTGGAGTGC AGAGAGTGAGTACACCAGTTGACATTCAGTAGCTGGAGTGC < 41bp 0.613475859762634 0.86672718978678 NA NA prediction 0.506502660048291 Functional Gain - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84520163 chrX:84520162 stopgain 0.998 0 20 hm7G_associated_SNPs_20693 0 0 1 0 1 ZNF711 chrX:84520261 5'GT 84520261 Upstream 100bp 19305 chrX 129318306 129318306 1 + G T LUAD 129318307 + 129318287 129318327 41 AACGTTTCCGCAAAAGCATGGTCGAGCATTACTACCGCAAC AACGTTTCCGCAAAAGCATTGTCGAGCATTACTACCGCAAC < 41bp 0.596929033323005 0.850162058829585 NA NA prediction 0.506466051013161 Functional Gain - RAB33A ENSG00000134594 CDS Human protein_coding chrX:129318307 chrX:129318306 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20694 0 0 0 0 1 RAB33A chrX:129318259 3'AG 129318259 Downstream 48bp 19306 chr17 32614154 32614154 1 + G T UCEC 32614155 + 32614135 32614175 41 TGCTTTAACCTGGCCAATAGGAAGATACCCCTTCAGCGACT TGCTTTAACCTGGCCAATATGAAGATACCCCTTCAGCGACT < 41bp 0.604525361313816 0.857727389290239 NA NA prediction 0.506404055952847 Functional Gain - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32614155 chr17:32614154 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_20699 0 0 0 0 2 CCL11 chr17:32614115 3'AG 32614115 Downstream 40bp 19307 chr17 32614154 32614154 1 + G T UCEC 32614155 + 32614135 32614175 41 TGCTTTAACCTGGCCAATAGGAAGATACCCCTTCAGCGACT TGCTTTAACCTGGCCAATATGAAGATACCCCTTCAGCGACT < 41bp 0.604525361313816 0.857727389290239 NA NA prediction 0.506404055952847 Functional Gain - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32614155 chr17:32614154 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_20699 0 0 0 0 2 CCL11 chr17:32614226 5'GT 32614226 Upstream 73bp 19308 chr2 109988086 109988086 1 + G T HNSC 109988087 + 109988067 109988107 41 GAGTGGATGAGAACTGGGCGGAAGGCATGCTGGGAGACAAG GAGTGGATGAGAACTGGGCTGAAGGCATGCTGGGAGACAAG < 41bp 0.429521980865616 0.753190754456244 NA NA prediction 0.506381508912487 Functional Gain - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:109988087 chr2:109988086 synonymous SNV . 0 20 hm7G_associated_SNPs_20700 0 0 1 0 2 SH3RF3 chr2:109988042 3'AG 109988042 Downstream 45bp 19309 chr2 109988086 109988086 1 + G T HNSC 109988087 + 109988067 109988107 41 GAGTGGATGAGAACTGGGCGGAAGGCATGCTGGGAGACAAG GAGTGGATGAGAACTGGGCTGAAGGCATGCTGGGAGACAAG < 41bp 0.429521980865616 0.753190754456244 NA NA prediction 0.506381508912487 Functional Gain - SH3RF3 ENSG00000172985 CDS Human protein_coding chr2:109988087 chr2:109988086 synonymous SNV . 0 20 hm7G_associated_SNPs_20700 0 0 1 0 2 SH3RF3 chr2:109988137 5'GT 109988137 Upstream 52bp 19310 chrX 44966737 44966737 1 + G T LUAD 44966738 + 44966718 44966758 41 AAAAGAGATTATATGGCATGGGCGGACAAAAGAAGAACCAG AAAAGAGATTATATGGCATTGGCGGACAAAAGAAGAACCAG < 41bp 0.430275736083429 0.75318136790059 NA NA prediction 0.50636273580118 Functional Gain - KDM6A ENSG00000147050 CDS Human protein_coding chrX:44966738 chrX:44966737 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20702 0 0 1 0 2 KDM6A chrX:44966655 3'AG 44966655 Downstream 83bp 19311 chrX 44966737 44966737 1 + G T LUAD 44966738 + 44966718 44966758 41 AAAAGAGATTATATGGCATGGGCGGACAAAAGAAGAACCAG AAAAGAGATTATATGGCATTGGCGGACAAAAGAAGAACCAG < 41bp 0.430275736083429 0.75318136790059 NA NA prediction 0.50636273580118 Functional Gain - KDM6A ENSG00000147050 CDS Human protein_coding chrX:44966738 chrX:44966737 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20702 0 0 1 0 2 KDM6A chrX:44966781 5'GT 44966781 Upstream 45bp 19312 chr2 98887199 98887199 1 + G T LUSC 98887200 + 98887180 98887220 41 ACAAAACAGTTTTAAACCAGGCTTTAGAACGGTTGAATTGG ACAAAACAGTTTTAAACCATGCTTTAGAACGGTTGAATTGG < 41bp 0.589385998382733 0.842524104084973 NA NA prediction 0.506276211404481 Functional Gain - VWA3B ENSG00000168658 CDS Human protein_coding chr2:98887200 chr2:98887199 nonsynonymous SNV 0.698 1 20 hm7G_associated_SNPs_20707 0 0 0 5 1 VWA3B chr2:98887145 3'AG 98887145 Downstream 55bp 19313 chr2 74902653 74902653 1 + G T LUSC 74902654 + 74902634 74902674 41 TCCTTTCCTGTCCCCTAGAGGATGGACACCTCCACCGAGCA TCCTTTCCTGTCCCCTAGATGATGGACACCTCCACCGAGCA < 41bp 0.422149808445899 0.753132911041134 NA NA prediction 0.506265822082267 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74902654 chr2:74902653 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_20708 0 0 0 0 1 SEMA4F chr2:74902652 3'AG 74902652 Downstream 2bp 19314 chr11 14853294 14853294 1 + G T HNSC 14853295 + 14853275 14853315 41 TGAACTTGTAGAAAAGATGGGAGAGAAATCAGGAAGGATTC TGAACTTGTAGAAAAGATGTGAGAGAAATCAGGAAGGATTC < 41bp 0.44694462077423 0.75312794142478 NA NA prediction 0.50625588284956 Functional Gain - PDE3B ENSG00000152270 CDS Human protein_coding chr11:14853295 chr11:14853294 stopgain 0.999 1 20 hm7G_associated_SNPs_20710 0 0 0 0 1 PDE3B chr11:14853323 5'GT 14853323 Upstream 30bp 19315 chrX 135067782 135067782 1 + G T PRAD 135067783 + 135067763 135067803 41 GGGCGTCTTTGACTGGGCAGGGGCTTCGGACGGCGGCGGCG GGGCGTCTTTGACTGGGCATGGGCTTCGGACGGCGGCGGCG < 41bp 0.620914877519892 0.874021644749785 NA NA prediction 0.506213534459785 Functional Gain - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135067783 chrX:135067782 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_20711 0 0 0 0 1 SLC9A6 chrX:135067762 3'AG 135067762 Downstream 21bp 19316 chr1 154207096 154207096 1 + G T LUAD 154207097 + 154207077 154207117 41 AGATGGTCGGGAAGAAGAAGGGAGTCTCAGGCCAGAAGGAT AGATGGTCGGGAAGAAGAATGGAGTCTCAGGCCAGAAGGAT < 41bp 0.628913147001805 0.882019680722431 NA NA prediction 0.506213067441253 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154207097 chr1:154207096 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20712 0 0 1 0 1 UBAP2L chr1:154207067 3'AG 154207067 Downstream 30bp 19317 chr20 9434092 9434092 1 + G T LUSC 9434093 + 9434073 9434113 41 ATGAGAAAATCCTAGAGAAGGCAATGAAGAAGAAGGGGTAA ATGAGAAAATCCTAGAGAATGCAATGAAGAAGAAGGGGTAA < 41bp 0.599578068165548 0.852684436794877 NA NA prediction 0.506212737258656 Functional Gain - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9434093 chr20:9434092 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20713 0 0 1 0 2 PLCB4 chr20:9433994 3'AG 9433994 Downstream 99bp 19318 chr20 9434092 9434092 1 + G T LUSC 9434093 + 9434073 9434113 41 ATGAGAAAATCCTAGAGAAGGCAATGAAGAAGAAGGGGTAA ATGAGAAAATCCTAGAGAATGCAATGAAGAAGAAGGGGTAA < 41bp 0.599578068165548 0.852684436794877 NA NA prediction 0.506212737258656 Functional Gain - PLCB4 ENSG00000101333 CDS Human protein_coding chr20:9434093 chr20:9434092 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20713 0 0 1 0 2 PLCB4 chr20:9434109 5'GT 9434109 Upstream 18bp 19319 chr5 137518035 137518035 1 + G T COAD 137518036 + 137518016 137518056 41 TTGGGCCAGAAGTGGGACAGGCATCCTTCTTCAACCTAACT TTGGGCCAGAAGTGGGACATGCATCCTTCTTCAACCTAACT < 41bp 0.414775474765259 0.753080674047469 NA NA prediction 0.506161348094937 Functional Gain - KIF20A ENSG00000112984 CDS Human protein_coding chr5:137518036 chr5:137518035 nonsynonymous SNV 0.953 4 20 hm7G_associated_SNPs_20716 0 0 1 0 1 KIF20A chr5:137518012 3'AG 137518012 Downstream 24bp 19320 chr5 75621241 75621241 1 + G T UCEC 75621242 + 75621222 75621262 41 CAAGGCAGCAGCCGTCCTGGGAAACTTAATATTTGGCTCTC CAAGGCAGCAGCCGTCCTGTGAAACTTAATATTTGGCTCTC < 41bp 0.433938572753129 0.753075490153736 NA NA prediction 0.506150980307472 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75621242 chr5:75621241 stopgain 0.976 1 20 hm7G_associated_SNPs_20718 0 0 0 0 1 SV2C chr5:75621189 3'AG 75621189 Downstream 53bp 19321 chr15 75562457 75562457 1 + G T COAD 75562458 + 75562438 75562478 41 CAACGTGGAGCCTGCACCAGGAGCGGCCAGGGAGGGTTCTC CAACGTGGAGCCTGCACCATGAGCGGCCAGGGAGGGTTCTC < 41bp 0.600389016860441 0.853404695539918 NA NA prediction 0.506031357358953 Functional Gain - GOLGA6C ENSG00000167195 CDS Human protein_coding chr15:75562458 chr15:75562457 stopgain 0.001 0 20 hm7G_associated_SNPs_20724 0 0 0 0 1 GOLGA6C chr15:75562413 3'AG 75562413 Downstream 45bp 19322 chr1 117603146 117603146 1 + G T LIHC 117603147 + 117603127 117603167 41 AAGAGCTTCTACGTGTGCCGGGCAGACACGTGCAGCTTCGT AAGAGCTTCTACGTGTGCCTGGCAGACACGTGCAGCTTCGT < 41bp 0.422111534706451 0.75301173639405 NA NA prediction 0.5060234727881 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117603147 chr1:117603146 nonsynonymous SNV 0.940 0 20 hm7G_associated_SNPs_20725 0 0 1 0 2 TTF2 chr1:117603077 3'AG 117603077 Downstream 70bp 19323 chr1 117603146 117603146 1 + G T LIHC 117603147 + 117603127 117603167 41 AAGAGCTTCTACGTGTGCCGGGCAGACACGTGCAGCTTCGT AAGAGCTTCTACGTGTGCCTGGCAGACACGTGCAGCTTCGT < 41bp 0.422111534706451 0.75301173639405 NA NA prediction 0.5060234727881 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117603147 chr1:117603146 nonsynonymous SNV 0.940 0 20 hm7G_associated_SNPs_20725 0 0 1 0 2 TTF2 chr1:117603179 5'GT 117603179 Upstream 34bp 19324 chr7 117876145 117876145 1 + G T UCEC 117876146 + 117876126 117876166 41 TTAACAATAATCCAAAAATGGTAAAATTTCTTCTGGAGAAA TTAACAATAATCCAAAAATTGTAAAATTTCTTCTGGAGAAA < 41bp 0.591072813475339 0.844076764075967 NA NA prediction 0.506007901201256 Functional Gain - ANKRD7 ENSG00000106013 CDS Human protein_coding chr7:117876146 chr7:117876145 nonsynonymous SNV 0.933 0 20 hm7G_associated_SNPs_20728 0 0 1 0 2 ANKRD7 chr7:117876095 3'AG 117876095 Downstream 51bp 19325 chr7 117876145 117876145 1 + G T UCEC 117876146 + 117876126 117876166 41 TTAACAATAATCCAAAAATGGTAAAATTTCTTCTGGAGAAA TTAACAATAATCCAAAAATTGTAAAATTTCTTCTGGAGAAA < 41bp 0.591072813475339 0.844076764075967 NA NA prediction 0.506007901201256 Functional Gain - ANKRD7 ENSG00000106013 CDS Human protein_coding chr7:117876146 chr7:117876145 nonsynonymous SNV 0.933 0 20 hm7G_associated_SNPs_20728 0 0 1 0 2 ANKRD7 chr7:117876201 5'GT 117876201 Upstream 57bp 19326 chrX 49846406 49846406 1 + G T THCA 49846407 + 49846387 49846427 41 GTCGTCTGGCTTGAGCCTGGGCAAAGAGGGCCCTCTAGTGC GTCGTCTGGCTTGAGCCTGTGCAAAGAGGGCCCTCTAGTGC < 41bp 0.421433362612471 0.752964228993952 NA NA prediction 0.505928457987904 Functional Gain - CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49846407 chrX:49846406 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20732 0 0 0 0 1 CLCN5 chrX:49846504 5'GT 49846504 Upstream 99bp 19327 chr19 58989057 58989057 1 + G T COAD 58989058 + 58989038 58989078 41 CTGCAGCCCAGAAGACAGAGGAACCACTTGGGAGCCCCCAC CTGCAGCCCAGAAGACAGATGAACCACTTGGGAGCCCCCAC < 41bp 0.411670605584786 0.752956310016084 NA NA prediction 0.505912620032169 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58989058 chr19:58989057 nonsynonymous SNV 0.765 2 20 hm7G_associated_SNPs_20733 0 0 0 0 1 ZNF446 chr19:58989004 3'AG 58989004 Downstream 54bp 19328 chr14 88893990 88893990 1 + G T COAD 88893991 + 88893971 88894011 41 CAGCTTTAAATCTGAGTTGGGGACAGCTGAGACTAAAAACA CAGCTTTAAATCTGAGTTGTGGACAGCTGAGACTAAAAACA < 41bp 0.60202183663095 0.85494417960123 NA NA prediction 0.50584468594056 Functional Gain - SPATA7 ENSG00000042317 CDS Human protein_coding chr14:88893991 chr14:88893990 nonsynonymous SNV 0.568 1 20 hm7G_associated_SNPs_20736 0 0 0 0 2 SPATA7 chr14:88893974 3'AG 88893974 Downstream 17bp 19329 chr14 88893990 88893990 1 + G T COAD 88893991 + 88893971 88894011 41 CAGCTTTAAATCTGAGTTGGGGACAGCTGAGACTAAAAACA CAGCTTTAAATCTGAGTTGTGGACAGCTGAGACTAAAAACA < 41bp 0.60202183663095 0.85494417960123 NA NA prediction 0.50584468594056 Functional Gain - SPATA7 ENSG00000042317 CDS Human protein_coding chr14:88893991 chr14:88893990 nonsynonymous SNV 0.568 1 20 hm7G_associated_SNPs_20736 0 0 0 0 2 SPATA7 chr14:88894040 5'GT 88894040 Upstream 51bp 19330 chrX 65427076 65427076 1 + G T LUAD 65427077 + 65427057 65427097 41 GCAACAAGGATGGGCTCCTGGGTTCCAGATACAAGAAAGCT GCAACAAGGATGGGCTCCTTGGTTCCAGATACAAGAAAGCT < 41bp 0.626676750550997 0.879574249250833 NA NA prediction 0.505794997399671 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65427077 chrX:65427076 synonymous SNV . 0 20 hm7G_associated_SNPs_20739 0 0 1 0 1 HEPH chrX:65427037 3'AG 65427037 Downstream 40bp 19331 chr9 101810249 101810249 1 + G T LUSC 101810250 + 101810230 101810270 41 CAGGACTGAATGGCCTCAAGGGTACCAAAGGAGATCCAGGG CAGGACTGAATGGCCTCAATGGTACCAAAGGAGATCCAGGG < 41bp 0.621864783063761 0.874751590087134 NA NA prediction 0.505773614046746 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101810250 chr9:101810249 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_20741 0 0 1 0 1 COL15A1 chr9:101810282 5'GT 101810282 Upstream 34bp 19332 chr11 124748308 124748308 1 + G T LUSC 124748309 + 124748289 124748329 41 GAACTGAGCTGCCTAGAAGGGCCGGAGGAGGAGCTGGAGGG GAACTGAGCTGCCTAGAAGTGCCGGAGGAGGAGCTGGAGGG < 41bp 0.626250713761889 0.879134672678656 NA NA prediction 0.505767917833534 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124748309 chr11:124748308 nonsynonymous SNV 0.107 1 20 hm7G_associated_SNPs_20742 0 0 0 0 1 ROBO3 chr11:124748332 5'GT 124748332 Upstream 25bp 19333 chr15 81173291 81173291 1 + G T GBM 81173292 + 81173272 81173312 41 TATGGTCTGAAGTACATTGGGGTTGGTAAAGGAGGCGCTCT TATGGTCTGAAGTACATTGTGGTTGGTAAAGGAGGCGCTCT < 41bp 0.622500711539113 0.87536487856568 NA NA prediction 0.505728334053133 Functional Gain - CEMIP ENSG00000103888 CDS Human protein_coding chr15:81173292 chr15:81173291 nonsynonymous SNV 0.416 5 20 hm7G_associated_SNPs_20743 0 0 0 0 1 CEMIP chr15:81173241 3'AG 81173241 Downstream 51bp 19334 chr1 196883720 196883720 1 + G T LUSC 196883721 + 196883701 196883741 41 GGACTACGAATGCTACGATGGATATGAAATCAGTTATGGAA GGACTACGAATGCTACGATTGATATGAAATCAGTTATGGAA < 41bp 0.435065655178766 0.752858617482078 NA NA prediction 0.505717234964156 Functional Gain - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196883721 chr1:196883720 stopgain 0.233 0 20 hm7G_associated_SNPs_20745 0 0 0 0 2 CFHR4 chr1:196883625 3'AG 196883625 Downstream 96bp 19335 chr1 196883720 196883720 1 + G T LUSC 196883721 + 196883701 196883741 41 GGACTACGAATGCTACGATGGATATGAAATCAGTTATGGAA GGACTACGAATGCTACGATTGATATGAAATCAGTTATGGAA < 41bp 0.435065655178766 0.752858617482078 NA NA prediction 0.505717234964156 Functional Gain - CFHR4 ENSG00000134365 CDS Human protein_coding chr1:196883721 chr1:196883720 stopgain 0.233 0 20 hm7G_associated_SNPs_20745 0 0 0 0 2 CFHR4 chr1:196883801 5'GT 196883801 Upstream 82bp 19336 chr3 169492136 169492136 1 + G T THCA 169492137 + 169492117 169492157 41 GAGAGACTGAACAAACAGCGGGAAGCAGGTTTTCTCTGTGA GAGAGACTGAACAAACAGCTGGAAGCAGGTTTTCTCTGTGA < 41bp 0.614499711587895 0.867333423844799 NA NA prediction 0.505667424513808 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169492137 chr3:169492136 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20746 0 0 1 0 1 MYNN chr3:169492219 5'GT 169492219 Upstream 84bp 19337 chr17 61628109 61628109 1 + G T KIRP 61628110 + 61628090 61628130 41 ACAGTCTACGCGATGAACTGGAGTGTGCGGCCCGATAAGCG ACAGTCTACGCGATGAACTTGAGTGTGCGGCCCGATAAGCG < 41bp 0.607522021962997 0.860350886096482 NA NA prediction 0.50565772826697 Functional Gain - DCAF7 ENSG00000136485 CDS Human protein_coding chr17:61628110 chr17:61628109 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20747 0 0 1 2 1 DCAF7 chr17:61628176 5'GT 61628176 Upstream 68bp 19338 chr16 58545393 58545393 1 + G T READ 58545394 + 58545374 58545414 41 TCACCAGTGCCAGCTCGGTGGATGGCAGCCGCCCACAGGCC TCACCAGTGCCAGCTCGGTTGATGGCAGCCGCCCACAGGCC < 41bp 0.6076614276204 0.86048147724163 NA NA prediction 0.505640099242461 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58545394 chr16:58545393 synonymous SNV . 0 20 hm7G_associated_SNPs_20748 0 0 0 0 1 NDRG4 chr16:58545326 3'AG 58545326 Downstream 68bp 19339 chr17 72921704 72921704 1 + G T LIHC 72921705 + 72921685 72921725 41 CATGGATGTCTTCAAGACCGGCTACTACTCCAGTTTCTTTG CATGGATGTCTTCAAGACCTGCTACTACTCCAGTTTCTTTG < 41bp 0.623053492715003 0.875869070667202 NA NA prediction 0.505631155904399 Functional Gain - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72921705 chr17:72921704 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_20749 0 0 0 0 2 OTOP2 chr17:72921651 3'AG 72921651 Downstream 54bp 19340 chr17 72921704 72921704 1 + G T LIHC 72921705 + 72921685 72921725 41 CATGGATGTCTTCAAGACCGGCTACTACTCCAGTTTCTTTG CATGGATGTCTTCAAGACCTGCTACTACTCCAGTTTCTTTG < 41bp 0.623053492715003 0.875869070667202 NA NA prediction 0.505631155904399 Functional Gain - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72921705 chr17:72921704 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_20749 0 0 0 0 2 OTOP2 chr17:72921787 5'GT 72921787 Upstream 84bp 19341 chr20 47612327 47612327 1 + G T rs148770948 47612328 + 47612308 47612348 41 ATTGTGTTTCAGGTAATTTGGTGAGTGGCGGAGTGGATAAA ATTGTGTTTCAGGTAATTTTGTGAGTGGCGGAGTGGATAAA < 41bp 0.436187614481334 0.752793229314733 NA NA prediction 0.505586458629466 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47612328 chr20:47612327 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_20752 0 0 1 0 2 ARFGEF2 chr20:47612320 3'AG 47612320 Downstream 8bp 19342 chr20 47612327 47612327 1 + G T rs148770948 47612328 + 47612308 47612348 41 ATTGTGTTTCAGGTAATTTGGTGAGTGGCGGAGTGGATAAA ATTGTGTTTCAGGTAATTTTGTGAGTGGCGGAGTGGATAAA < 41bp 0.436187614481334 0.752793229314733 NA NA prediction 0.505586458629466 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47612328 chr20:47612327 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_20752 0 0 1 0 2 ARFGEF2 chr20:47612419 5'GT 47612419 Upstream 93bp 19343 chr2 96458199 96458199 1 + G T HNSC 96458200 + 96458180 96458220 41 GGCTAGCCTGTGGTCGTCAGGCTTTGGGATGAAGCTGGAGG GGCTAGCCTGTGGTCGTCATGCTTTGGGATGAAGCTGGAGG < 41bp 0.46550022855606 0.752758302375902 NA NA prediction 0.505516604751803 Functional Gain - TRIM43;LINC00342 ENSG00000237510 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96458200 chr2:96458199 . . 0 20 hm7G_associated_SNPs_20756 0 0 0 0 2 TRIM43;LINC00342 chr2:96458181 3'AG 96458181 Downstream 19bp 19344 chr2 96458199 96458199 1 + G T HNSC 96458200 + 96458180 96458220 41 GGCTAGCCTGTGGTCGTCAGGCTTTGGGATGAAGCTGGAGG GGCTAGCCTGTGGTCGTCATGCTTTGGGATGAAGCTGGAGG < 41bp 0.46550022855606 0.752758302375902 NA NA prediction 0.505516604751803 Functional Gain - TRIM43;LINC00342 ENSG00000237510 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:96458200 chr2:96458199 . . 0 20 hm7G_associated_SNPs_20756 0 0 0 0 2 TRIM43;LINC00342 chr2:96458294 5'GT 96458294 Upstream 96bp 19345 chr7 5266848 5266848 1 + G T LUAD 5266849 + 5266829 5266869 41 CACCTGGACCGGGTACTTCGGGAAAGTGCTCATGGCCTCCA CACCTGGACCGGGTACTTCTGGAAAGTGCTCATGGCCTCCA < 41bp 0.630110530519619 0.882856865924792 NA NA prediction 0.505492670810345 Functional Gain - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5266849 chr7:5266848 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_20757 0 0 1 0 1 WIPI2 chr7:5266811 3'AG 5266811 Downstream 38bp 19346 chr10 75672754 75672754 1 + G T UCEC 75672755 + 75672735 75672775 41 AGCACTGACACCATGGGCCGGCCCTGCCTGCCCTGGAACTC AGCACTGACACCATGGGCCTGCCCTGCCTGCCCTGGAACTC < 41bp 0.399611127341769 0.752731364113054 NA NA prediction 0.505462728226108 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75672755 chr10:75672754 nonsynonymous SNV 0.504 3 20 hm7G_associated_SNPs_20759 0 0 0 0 1 PLAU chr10:75672682 3'AG 75672682 Downstream 73bp 19347 chr16 31374570 31374570 1 + G T LUAD 31374571 + 31374551 31374591 41 GGCGGCTCTGACAGTGCTGGGGGATGTGAATGGGGACAAGC GGCGGCTCTGACAGTGCTGTGGGATGTGAATGGGGACAAGC < 41bp 0.3956623198532 0.752712913332409 NA NA prediction 0.505425826664818 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31374571 chr16:31374570 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_20760 0 0 0 0 1 ITGAX chr16:31374486 3'AG 31374486 Downstream 85bp 19348 chr6 110551182 110551182 1 + G T LUAD 110551183 + 110551163 110551203 41 GATTTCAGGAGATGGAAATGGAAAATTAAACATTTGGGACT GATTTCAGGAGATGGAAATTGAAAATTAAACATTTGGGACT < 41bp 0.572023913708115 0.824682292157684 NA NA prediction 0.505316756899138 Functional Gain - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110551183 chr6:110551182 stopgain 1.000 1 20 hm7G_associated_SNPs_20761 0 0 1 0 1 CDC40 chr6:110551157 3'AG 110551157 Downstream 26bp 19349 chr1 110582048 110582048 1 + G T STAD 110582049 + 110582029 110582069 41 AGTGCAGCTCGGAGGCAGAGGTGCAGTCCTGGATGCGCTAC AGTGCAGCTCGGAGGCAGATGTGCAGTCCTGGATGCGCTAC < 41bp 0.518417132679432 0.771068678908904 NA NA prediction 0.505303092458943 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110582049 chr1:110582048 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_20763 0 0 1 0 1 STRIP1 chr1:110582017 3'AG 110582017 Downstream 32bp 19350 chr11 2940624 2940624 1 + G T LUAD 2940625 + 2940605 2940645 41 TACCTCATGTCCTTCTTCGGGCTCCTCCAGATGGTGAGTGG TACCTCATGTCCTTCTTCGTGCTCCTCCAGATGGTGAGTGG < 41bp 0.622835891198811 0.875482065584591 NA NA prediction 0.505292348771558 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2940625 chr11:2940624 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_20764 0 0 1 0 2 SLC22A18 chr11:2940537 3'AG 2940537 Downstream 88bp 19351 chr11 2940624 2940624 1 + G T LUAD 2940625 + 2940605 2940645 41 TACCTCATGTCCTTCTTCGGGCTCCTCCAGATGGTGAGTGG TACCTCATGTCCTTCTTCGTGCTCCTCCAGATGGTGAGTGG < 41bp 0.622835891198811 0.875482065584591 NA NA prediction 0.505292348771558 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2940625 chr11:2940624 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_20764 0 0 1 0 2 SLC22A18 chr11:2940637 5'GT 2940637 Upstream 14bp 19352 chr9 131760896 131760896 1 + G T UCEC 131760897 + 131760877 131760917 41 CTTATCCTCCTCCGGCAGTGGAAGAGGTGAGGCTGTGCCAG CTTATCCTCCTCCGGCAGTTGAAGAGGTGAGGCTGTGCCAG < 41bp 0.621733443179781 0.874357461383988 NA NA prediction 0.505248036408415 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131760897 chr9:131760896 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20767 0 0 1 0 2 NUP188 chr9:131760817 3'AG 131760817 Downstream 80bp 19353 chr9 131760896 131760896 1 + G T UCEC 131760897 + 131760877 131760917 41 CTTATCCTCCTCCGGCAGTGGAAGAGGTGAGGCTGTGCCAG CTTATCCTCCTCCGGCAGTTGAAGAGGTGAGGCTGTGCCAG < 41bp 0.621733443179781 0.874357461383988 NA NA prediction 0.505248036408415 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131760897 chr9:131760896 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20767 0 0 1 0 2 NUP188 chr9:131760902 5'GT 131760902 Upstream 7bp 19354 chr16 1396881 1396881 1 + G T LUAD 1396882 + 1396862 1396902 41 TGTGGGAGCTACTCCTCCAGGCCATTCTGCAGGCGCTGGGT TGTGGGAGCTACTCCTCCATGCCATTCTGCAGGCGCTGGGT < 41bp 0.404306426125972 0.752597444054451 NA NA prediction 0.505194888108901 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1396882 chr16:1396881 nonsynonymous SNV 0.846 0 20 hm7G_associated_SNPs_20772 0 0 0 0 1 BAIAP3 chr16:1396956 5'GT 1396956 Upstream 76bp 19355 chr10 101448485 101448485 1 + G T THCA 101448486 + 101448466 101448506 41 TTGGAATCAACTTTGTTTTGGGAAGATTCGACCACGAGGAT TTGGAATCAACTTTGTTTTTGGAAGATTCGACCACGAGGAT < 41bp 0.426868103760675 0.752584895997139 NA NA prediction 0.505169791994278 Functional Gain - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101448486 chr10:101448485 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20774 0 0 1 0 2 ENTPD7 chr10:101448451 3'AG 101448451 Downstream 35bp 19356 chr10 101448485 101448485 1 + G T THCA 101448486 + 101448466 101448506 41 TTGGAATCAACTTTGTTTTGGGAAGATTCGACCACGAGGAT TTGGAATCAACTTTGTTTTTGGAAGATTCGACCACGAGGAT < 41bp 0.426868103760675 0.752584895997139 NA NA prediction 0.505169791994278 Functional Gain - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101448486 chr10:101448485 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20774 0 0 1 0 2 ENTPD7 chr10:101448507 5'GT 101448507 Upstream 23bp 19357 chr4 39466781 39466781 1 + G T UCEC 39466782 + 39466762 39466802 41 GCAAAGGCAATTGCAGAATGGGGTCTGGATTATGTTGTCCT GCAAAGGCAATTGCAGAATTGGGTCTGGATTATGTTGTCCT < 41bp 0.619400496678003 0.871978422162481 NA NA prediction 0.505155850968956 Functional Gain - LIAS ENSG00000121897 CDS Human protein_coding chr4:39466782 chr4:39466781 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20775 0 0 1 0 1 LIAS chr4:39466822 5'GT 39466822 Upstream 42bp 19358 chr3 98487356 98487356 1 + G T UCEC 98487357 + 98487337 98487377 41 TACTGCATTGCATATTATGGGGAACGAATGTCTATTGGTAA TACTGCATTGCATATTATGTGGAACGAATGTCTATTGGTAA < 41bp 0.446334217417072 0.752572567205639 NA NA prediction 0.505145134411277 Functional Gain - ST3GAL6 ENSG00000064225 CDS Human protein_coding chr3:98487357 chr3:98487356 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_20776 0 0 1 0 2 ST3GAL6 chr3:98487274 3'AG 98487274 Downstream 83bp 19359 chr3 98487356 98487356 1 + G T UCEC 98487357 + 98487337 98487377 41 TACTGCATTGCATATTATGGGGAACGAATGTCTATTGGTAA TACTGCATTGCATATTATGTGGAACGAATGTCTATTGGTAA < 41bp 0.446334217417072 0.752572567205639 NA NA prediction 0.505145134411277 Functional Gain - ST3GAL6 ENSG00000064225 CDS Human protein_coding chr3:98487357 chr3:98487356 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_20776 0 0 1 0 2 ST3GAL6 chr3:98487373 5'GT 98487373 Upstream 18bp 19360 chr15 29393984 29393984 1 + G T UCEC 29393985 + 29393965 29394005 41 GCCATGTGTTCGAGTCGGAGGATGTAAGTAAGCCCTTGCCA GCCATGTGTTCGAGTCGGATGATGTAAGTAAGCCCTTGCCA < 41bp 0.413946368804031 0.752559039422579 NA NA prediction 0.505118078845159 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29393985 chr15:29393984 nonsynonymous SNV 0.794 2 20 hm7G_associated_SNPs_20777 0 0 1 0 1 APBA2 chr15:29393987 5'GT 29393987 Upstream 4bp 19361 chr11 59814465 59814465 1 + G T LIHC 59814466 + 59814446 59814486 41 CTGAGAATGAAATAAAATTGGATCCTAGTCCTTTTATTGCT CTGAGAATGAAATAAAATTTGATCCTAGTCCTTTTATTGCT < 41bp 0.465685145346726 0.752550477790689 NA NA prediction 0.505100955581377 Functional Gain - OOSP2 ENSG00000149507 CDS Human protein_coding chr11:59814466 chr11:59814465 nonsynonymous SNV 0.446 0 20 hm7G_associated_SNPs_20778 0 0 0 0 1 OOSP2 chr11:59814417 3'AG 59814417 Downstream 49bp 19362 chr7 77230078 77230078 1 + G T UCEC 77230079 + 77230059 77230099 41 GACATGATAAGCTTAATGAGGAAATATCAAGAACATGAAGA GACATGATAAGCTTAATGATGAAATATCAAGAACATGAAGA < 41bp 0.603938326600379 0.856488707322781 NA NA prediction 0.505100761444804 Functional Gain - PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77230079 chr7:77230078 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20779 0 0 1 0 2 PTPN12 chr7:77229981 3'AG 77229981 Downstream 98bp 19363 chr7 77230078 77230078 1 + G T UCEC 77230079 + 77230059 77230099 41 GACATGATAAGCTTAATGAGGAAATATCAAGAACATGAAGA GACATGATAAGCTTAATGATGAAATATCAAGAACATGAAGA < 41bp 0.603938326600379 0.856488707322781 NA NA prediction 0.505100761444804 Functional Gain - PTPN12 ENSG00000127947 CDS Human protein_coding chr7:77230079 chr7:77230078 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20779 0 0 1 0 2 PTPN12 chr7:77230123 5'GT 77230123 Upstream 46bp 19364 chr18 61233928 61233928 1 + G T LUAD 61233929 + 61233909 61233949 41 GTGGTCCTGTCCTTCCCCCGGTTCACCCTGGAAGACAGCTA GTGGTCCTGTCCTTCCCCCTGTTCACCCTGGAAGACAGCTA < 41bp 0.603230669665451 0.8557772319216 NA NA prediction 0.505093124512298 Functional Gain - SERPINB12 ENSG00000166634 CDS Human protein_coding chr18:61233929 chr18:61233928 nonsynonymous SNV 0.978 2 20 hm7G_associated_SNPs_20781 0 0 0 0 1 SERPINB12 chr18:61233840 3'AG 61233840 Downstream 89bp 19365 chr8 36780046 36780046 1 + G T ESCA 36780047 + 36780027 36780067 41 CTTTATTGAACAGCTTGGTGGACTGGAAGGGTCCCTCCAAG CTTTATTGAACAGCTTGGTTGACTGGAAGGGTCCCTCCAAG < 41bp 0.426555011047278 0.752543185469511 NA NA prediction 0.505086370939023 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36780047 chr8:36780046 stopgain 0.982 0 20 hm7G_associated_SNPs_20782 0 0 0 0 1 KCNU1 chr8:36780008 3'AG 36780008 Downstream 39bp 19366 chr8 143603424 143603424 1 + G T LUAD 143603425 + 143603405 143603445 41 AGTCCTACATGGCGGTGACGGGCCACCTCCGGAACCGCCTC AGTCCTACATGGCGGTGACTGGCCACCTCCGGAACCGCCTC < 41bp 0.407000814836766 0.752542776435121 NA NA prediction 0.505085552870243 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143603425 chr8:143603424 synonymous SNV . 0 20 hm7G_associated_SNPs_20783 0 0 0 0 2 ADGRB1 chr8:143603326 3'AG 143603326 Downstream 99bp 19367 chr8 143603424 143603424 1 + G T LUAD 143603425 + 143603405 143603445 41 AGTCCTACATGGCGGTGACGGGCCACCTCCGGAACCGCCTC AGTCCTACATGGCGGTGACTGGCCACCTCCGGAACCGCCTC < 41bp 0.407000814836766 0.752542776435121 NA NA prediction 0.505085552870243 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143603425 chr8:143603424 synonymous SNV . 0 20 hm7G_associated_SNPs_20783 0 0 0 0 2 ADGRB1 chr8:143603476 5'GT 143603476 Upstream 53bp 19368 chrX 79279597 79279597 1 + G T ESCA 79279598 + 79279578 79279618 41 GTTCGGGTCAAGGTGAAAGGGTTGGATCCAGGGAAGCAGTA GTTCGGGTCAAGGTGAAAGTGTTGGATCCAGGGAAGCAGTA < 41bp 0.61400277554448 0.866524580970383 NA NA prediction 0.505043610851806 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279598 chrX:79279597 nonsynonymous SNV 0.900 5 20 hm7G_associated_SNPs_20784 0 0 0 0 2 TBX22 chrX:79279562 3'AG 79279562 Downstream 36bp 19369 chrX 79279597 79279597 1 + G T ESCA 79279598 + 79279578 79279618 41 GTTCGGGTCAAGGTGAAAGGGTTGGATCCAGGGAAGCAGTA GTTCGGGTCAAGGTGAAAGTGTTGGATCCAGGGAAGCAGTA < 41bp 0.61400277554448 0.866524580970383 NA NA prediction 0.505043610851806 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279598 chrX:79279597 nonsynonymous SNV 0.900 5 20 hm7G_associated_SNPs_20784 0 0 0 0 2 TBX22 chrX:79279663 5'GT 79279663 Upstream 67bp 19370 chr10 64913296 64913296 1 + G T COAD 64913297 + 64913277 64913317 41 CTTTCACTGGAATTGCAAAGGGATAGCCATATGAAACAGCT CTTTCACTGGAATTGCAAATGGATAGCCATATGAAACAGCT < 41bp 0.600739889973649 0.853243818406472 NA NA prediction 0.505007856865645 Functional Gain - NRBF2 ENSG00000148572 CDS Human protein_coding chr10:64913297 chr10:64913296 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20785 0 0 0 0 1 NRBF2 chr10:64913271 3'AG 64913271 Downstream 26bp 19371 chr19 7571041 7571041 1 + G T LUAD 7571042 + 7571022 7571062 41 AGCAAAGCTACCTGCCGCGGGGCACGGGCGGTGAGCGCTCC AGCAAAGCTACCTGCCGCGTGGCACGGGCGGTGAGCGCTCC < 41bp 0.623314728118189 0.875812943321667 NA NA prediction 0.504996430406956 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7571042 chr19:7571041 synonymous SNV . 0 20 hm7G_associated_SNPs_20786 0 0 0 0 1 TEX45 chr19:7571051 5'GT 7571051 Upstream 11bp 19372 chrX 150348938 150348938 1 + G T THCA 150348939 + 150348919 150348959 41 CCTCAACGCTGTGATCTACGGGCTCCTCAATGAGAATTTCC CCTCAACGCTGTGATCTACTGGCTCCTCAATGAGAATTTCC < 41bp 0.618222993237725 0.87071445745452 NA NA prediction 0.504982928433592 Functional Gain - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150348939 chrX:150348938 nonsynonymous SNV 0.937 4 20 hm7G_associated_SNPs_20789 0 0 0 0 1 GPR50 chrX:150348903 3'AG 150348903 Downstream 36bp 19373 chr16 54966496 54966496 1 + G T LUAD 54966497 + 54966477 54966517 41 TGGGATCGTACCCTTACGGGGACCCAGCGTACCGGAAGAAC TGGGATCGTACCCTTACGGTGACCCAGCGTACCGGAAGAAC < 41bp 0.414045740875207 0.752483850592428 NA NA prediction 0.504967701184856 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966497 chr16:54966496 synonymous SNV . 0 20 hm7G_associated_SNPs_20790 0 0 0 0 1 IRX5 chr16:54966410 3'AG 54966410 Downstream 87bp 19374 chr9 2647580 2647580 1 + G T CESC 2647581 + 2647561 2647601 41 GGATATCCAGTGGCCTAACGGAATTACACTTGGTATGTATG GGATATCCAGTGGCCTAACTGAATTACACTTGGTATGTATG < 41bp 0.426014891974929 0.752475057871791 NA NA prediction 0.504950115743582 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2647581 chr9:2647580 stopgain 0.989 1 20 hm7G_associated_SNPs_20791 0 0 1 0 1 VLDLR chr9:2647592 5'GT 2647592 Upstream 13bp 19375 chr8 24359014 24359014 1 + G T GBM 24359015 + 24358995 24359035 41 CTACAGAAACCCTGGGAGTGGAGAACAAAGGATACTTTGGT CTACAGAAACCCTGGGAGTTGAGAACAAAGGATACTTTGGT < 41bp 0.444003878923185 0.752456100143992 NA NA prediction 0.504912200287983 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24359015 chr8:24359014 synonymous SNV . 0 20 hm7G_associated_SNPs_20792 0 0 0 0 2 ADAM7 chr8:24358990 3'AG 24358990 Downstream 25bp 19376 chr8 24359014 24359014 1 + G T GBM 24359015 + 24358995 24359035 41 CTACAGAAACCCTGGGAGTGGAGAACAAAGGATACTTTGGT CTACAGAAACCCTGGGAGTTGAGAACAAAGGATACTTTGGT < 41bp 0.444003878923185 0.752456100143992 NA NA prediction 0.504912200287983 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24359015 chr8:24359014 synonymous SNV . 0 20 hm7G_associated_SNPs_20792 0 0 0 0 2 ADAM7 chr8:24359089 5'GT 24359089 Upstream 76bp 19377 chr11 124007767 124007767 1 + G T STAD 124007768 + 124007748 124007788 41 AGTCCTTGCTCCAGACCAAGGACATGGGCCTCAGGGAGACT AGTCCTTGCTCCAGACCAATGACATGGGCCTCAGGGAGACT < 41bp 0.629860425357113 0.88228401244992 NA NA prediction 0.504847174185614 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:124007768 chr11:124007767 nonsynonymous SNV 0.442 1 20 hm7G_associated_SNPs_20797 0 0 0 0 1 VWA5A chr11:124007722 3'AG 124007722 Downstream 46bp 19378 chr4 89414185 89414185 1 + G T UCEC 89414186 + 89414166 89414206 41 TCATTTAGTGGAGAAATTGGGTATGACCTCGGAGGAGTCAA TCATTTAGTGGAGAAATTGTGTATGACCTCGGAGGAGTCAA < 41bp 0.60362071824284 0.856042466903369 NA NA prediction 0.504843497321057 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89414186 chr4:89414185 nonsynonymous SNV 0.086 1 20 hm7G_associated_SNPs_20798 0 0 1 0 1 HERC5 chr4:89414163 3'AG 89414163 Downstream 23bp 19379 chr11 95532434 95532434 1 + G T LUAD 95532435 + 95532415 95532455 41 CAAGGTCTAATGGAAGCATGGTTCGGCATTCTTCATCTCCA CAAGGTCTAATGGAAGCATTGTTCGGCATTCTTCATCTCCA < 41bp 0.442102093116237 0.752415486286945 NA NA prediction 0.504830972573889 Functional Gain - CEP57 ENSG00000166037 CDS Human protein_coding chr11:95532435 chr11:95532434 nonsynonymous SNV 0.770 0 20 hm7G_associated_SNPs_20799 0 0 1 0 1 CEP57 chr11:95532396 3'AG 95532396 Downstream 39bp 19380 chr14 102910075 102910075 1 + G T UCEC 102910076 + 102910056 102910096 41 CCCGGAACAATGTGGTGTGGGCGCTGACAGAGCAGAGGGCC CCCGGAACAATGTGGTGTGTGCGCTGACAGAGCAGAGGGCC < 41bp 0.401851427866455 0.752409604706253 NA NA prediction 0.504819209412507 Functional Gain - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102910076 chr14:102910075 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20800 0 0 1 0 2 TECPR2 chr14:102909984 3'AG 102909984 Downstream 92bp 19381 chr14 102910075 102910075 1 + G T UCEC 102910076 + 102910056 102910096 41 CCCGGAACAATGTGGTGTGGGCGCTGACAGAGCAGAGGGCC CCCGGAACAATGTGGTGTGTGCGCTGACAGAGCAGAGGGCC < 41bp 0.401851427866455 0.752409604706253 NA NA prediction 0.504819209412507 Functional Gain - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102910076 chr14:102910075 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20800 0 0 1 0 2 TECPR2 chr14:102910164 5'GT 102910164 Upstream 90bp 19382 chr10 118354352 118354352 1 + G T LUSC 118354353 + 118354333 118354373 41 GAGTGGTGGGCGCCCAGGTGGCCCAGATGCTCGACATCCTC GAGTGGTGGGCGCCCAGGTTGCCCAGATGCTCGACATCCTC < 41bp 0.405088581793532 0.752359442593317 NA NA prediction 0.504718885186634 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118354353 chr10:118354352 synonymous SNV . 0 20 hm7G_associated_SNPs_20802 0 0 0 0 1 PNLIPRP1 chr10:118354376 5'GT 118354376 Upstream 25bp 19383 chr12 4870288 4870288 1 + G T LUSC 4870289 + 4870269 4870309 41 ACAAACACATGGTCTACTTGGCCTGGAACATACCTCTCCAG ACAAACACATGGTCTACTTTGCCTGGAACATACCTCTCCAG < 41bp 0.410474850861976 0.752345076528462 NA NA prediction 0.504690153056923 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4870289 chr12:4870288 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_20804 0 0 0 0 1 GALNT8 chr12:4870309 5'GT 4870309 Upstream 22bp 19384 chr16 81942071 81942071 1 + G T UCEC 81942072 + 81942052 81942092 41 AGAAATGGTTCCACAAGAAGGTGGAGAAGAGGACGAGTGCC AGAAATGGTTCCACAAGAATGTGGAGAAGAGGACGAGTGCC < 41bp 0.618667262652035 0.871009648539575 NA NA prediction 0.504684771775079 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81942072 chr16:81942071 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_20805 0 0 0 0 1 PLCG2 chr16:81942021 3'AG 81942021 Downstream 51bp 19385 chr1 48695073 48695073 1 + G T UCEC 48695074 + 48695054 48695094 41 AAGCGATTTGGGGGCCAGAGGATCCAGGTGTACATGTCTGT AAGCGATTTGGGGGCCAGATGATCCAGGTGTACATGTCTGT < 41bp 0.575932532923975 0.828273023061899 NA NA prediction 0.504680980275849 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48695074 chr1:48695073 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20806 0 0 1 0 1 SLC5A9 chr1:48695131 5'GT 48695131 Upstream 59bp 19386 chrX 150154657 150154657 1 + G T UCEC 150154658 + 150154638 150154678 41 GATCCTAATGCTCCCAAAAGGCCACCGTAAGTGACTATAGG GATCCTAATGCTCCCAAAATGCCACCGTAAGTGACTATAGG < 41bp 0.591015581114194 0.843325277086256 NA NA prediction 0.504619391944124 Functional Gain - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150154658 chrX:150154657 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20809 0 0 1 0 1 HMGB3 chrX:150154663 5'GT 150154663 Upstream 7bp 19387 chr2 242651482 242651482 1 + G T CESC 242651483 + 242651463 242651503 41 AAAGAAAAAGAAGCACAAAGGAGGGTAAGAGGCTTTCCCCT AAAGAAAAAGAAGCACAAATGAGGGTAAGAGGCTTTCCCCT < 41bp 0.61392124680761 0.866213570706503 NA NA prediction 0.504584647797786 Functional Gain - ING5 ENSG00000168395 CDS Human protein_coding chr2:242651483 chr2:242651482 stopgain 0.855 0 20 hm7G_associated_SNPs_20811 0 0 1 0 1 ING5 chr2:242651393 3'AG 242651393 Downstream 90bp 19388 chr12 133732171 133732171 1 + G T OV 133732172 + 133732152 133732192 41 AATCCTGTGACATTAAAATGGAAGGAATGGCAAGGAATGAT AATCCTGTGACATTAAAATTGAAGGAATGGCAAGGAATGAT < 41bp 0.586320662194209 0.838596980360494 NA NA prediction 0.50455263633257 Functional Gain - ZNF10 ENSG00000090612;ENSG00000256223;ENSG00000256825 CDS Human other chr12:133732172 chr12:133732171 nonsynonymous SNV 0.978 0 20 hm7G_associated_SNPs_20813 0 0 0 0 1 ZNF10 chr12:133732089 3'AG 133732089 Downstream 83bp 19389 chr20 44682330 44682330 1 + G T UCEC 44682331 + 44682311 44682351 41 ATTTACGCATCACTGCGGAGGTCGAGGTGGTGGAGATGGTG ATTTACGCATCACTGCGGATGTCGAGGTGGTGGAGATGGTG < 41bp 0.421467115798603 0.752274684516 NA NA prediction 0.504549369032 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44682331 chr20:44682330 nonsynonymous SNV 0.860 1 20 hm7G_associated_SNPs_20814 0 0 0 0 1 SLC12A5 chr20:44682348 5'GT 44682348 Upstream 19bp 19390 chr5 139742048 139742048 1 + G T LUAD 139742049 + 139742029 139742069 41 GGTTTTTCTGCCTTCTCCTGGGCCCCTGTATGCTGGGAAAG GGTTTTTCTGCCTTCTCCTTGGCCCCTGTATGCTGGGAAAG < 41bp 0.400902699102047 0.752232390911131 NA NA prediction 0.504464781822263 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139742049 chr5:139742048 synonymous SNV . 0 20 hm7G_associated_SNPs_20824 0 0 0 0 2 SLC4A9 chr5:139742030 3'AG 139742030 Downstream 19bp 19391 chr5 139742048 139742048 1 + G T LUAD 139742049 + 139742029 139742069 41 GGTTTTTCTGCCTTCTCCTGGGCCCCTGTATGCTGGGAAAG GGTTTTTCTGCCTTCTCCTTGGCCCCTGTATGCTGGGAAAG < 41bp 0.400902699102047 0.752232390911131 NA NA prediction 0.504464781822263 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139742049 chr5:139742048 synonymous SNV . 0 20 hm7G_associated_SNPs_20824 0 0 0 0 2 SLC4A9 chr5:139742117 5'GT 139742117 Upstream 70bp 19392 chr16 20451237 20451237 1 + G T ESCA 20451238 + 20451218 20451258 41 GCTCCATACAAATACCCCAGGAAGGTAAATATCAGGGTTTC GCTCCATACAAATACCCCATGAAGGTAAATATCAGGGTTTC < 41bp 0.607474302300658 0.859703057587632 NA NA prediction 0.504457510573948 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20451238 chr16:20451237 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20826 0 0 0 0 1 ACSM5 chr16:20451241 5'GT 20451241 Upstream 5bp 19393 chrX 73749109 73749109 1 + G T LIHC 73749110 + 73749090 73749130 41 CCCCTGTGCCGGGACTTCGGGGGCCTTATCGTCGTCTGTCT CCCCTGTGCCGGGACTTCGTGGGCCTTATCGTCGTCTGTCT < 41bp 0.412877986339088 0.752208968405917 NA NA prediction 0.504417936811834 Functional Gain - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73749110 chrX:73749109 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_20828 0 0 0 0 1 SLC16A2 chrX:73749048 3'AG 73749048 Downstream 62bp 19394 chr17 33591832 33591832 1 + G T UCEC 33591833 + 33591813 33591853 41 AAGACTATCTTGGCTCTTAGGATCATGGAGAAGATCAGGAA AAGACTATCTTGGCTCTTATGATCATGGAGAAGATCAGGAA < 41bp 0.441320673335897 0.752208420481125 NA NA prediction 0.50441684096225 Functional Gain - SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33591833 chr17:33591832 nonsynonymous SNV 0.171 1 20 hm7G_associated_SNPs_20829 0 0 0 0 1 SLFN5 chr17:33591922 5'GT 33591922 Upstream 91bp 19395 chr4 69968561 69968561 1 + G T OV 69968562 + 69968542 69968582 41 ACAGAGCTCTGGAGAAAATGGTGTTGTGGTGTTTTCTCTGG ACAGAGCTCTGGAGAAAATTGTGTTGTGGTGTTTTCTCTGG < 41bp 0.440613765118657 0.752207466952844 NA NA prediction 0.504414933905688 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69968562 chr4:69968561 nonsynonymous SNV 0.390 3 20 hm7G_associated_SNPs_20830 0 0 0 0 2 UGT2B7 chr4:69968525 3'AG 69968525 Downstream 37bp 19396 chr4 69968561 69968561 1 + G T OV 69968562 + 69968542 69968582 41 ACAGAGCTCTGGAGAAAATGGTGTTGTGGTGTTTTCTCTGG ACAGAGCTCTGGAGAAAATTGTGTTGTGGTGTTTTCTCTGG < 41bp 0.440613765118657 0.752207466952844 NA NA prediction 0.504414933905688 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69968562 chr4:69968561 nonsynonymous SNV 0.390 3 20 hm7G_associated_SNPs_20830 0 0 0 0 2 UGT2B7 chr4:69968656 5'GT 69968656 Upstream 96bp 19397 chr3 141231075 141231075 1 + G T OV 141231076 + 141231056 141231096 41 GTTTCTGTACCATAAATTTGGACCAGGAAGAAGTTTATCGT GTTTCTGTACCATAAATTTTGACCAGGAAGAAGTTTATCGT < 41bp 0.607470131352496 0.859650145217484 NA NA prediction 0.504360027729977 Functional Gain - RASA2 ENSG00000155903 CDS Human protein_coding chr3:141231076 chr3:141231075 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20832 0 0 1 0 2 RASA2 chr3:141231005 3'AG 141231005 Downstream 71bp 19398 chr3 141231075 141231075 1 + G T OV 141231076 + 141231056 141231096 41 GTTTCTGTACCATAAATTTGGACCAGGAAGAAGTTTATCGT GTTTCTGTACCATAAATTTTGACCAGGAAGAAGTTTATCGT < 41bp 0.607470131352496 0.859650145217484 NA NA prediction 0.504360027729977 Functional Gain - RASA2 ENSG00000155903 CDS Human protein_coding chr3:141231076 chr3:141231075 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20832 0 0 1 0 2 RASA2 chr3:141231122 5'GT 141231122 Upstream 48bp 19399 chr10 96352231 96352231 1 + G T LUSC 96352232 + 96352212 96352252 41 AGAGATTTCAACTTCAGCAGGCTTGATGGGTCCATGTCTTA AGAGATTTCAACTTCAGCATGCTTGATGGGTCCATGTCTTA < 41bp 0.608399219891184 0.860576101798786 NA NA prediction 0.504353763815205 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96352232 chr10:96352231 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_20833 0 0 1 1 2 HELLS chr10:96352152 3'AG 96352152 Downstream 80bp 19400 chr10 96352231 96352231 1 + G T LUSC 96352232 + 96352212 96352252 41 AGAGATTTCAACTTCAGCAGGCTTGATGGGTCCATGTCTTA AGAGATTTCAACTTCAGCATGCTTGATGGGTCCATGTCTTA < 41bp 0.608399219891184 0.860576101798786 NA NA prediction 0.504353763815205 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96352232 chr10:96352231 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_20833 0 0 1 1 2 HELLS chr10:96352271 5'GT 96352271 Upstream 41bp 19401 chr16 456350 456350 1 + G T LUAD 456351 + 456331 456371 41 CTTCTGGTTTTGCAGGCACGGCTGCCATACGGTGATTGCCA CTTCTGGTTTTGCAGGCACTGCTGCCATACGGTGATTGCCA < 41bp 0.596352375433355 0.848526572190888 NA NA prediction 0.504348393515065 Functional Gain - DECR2 ENSG00000103202;ENSG00000242612 CDS Human other chr16:456351 chr16:456350 nonsynonymous SNV 0.587 4 20 hm7G_associated_SNPs_20834 0 0 1 0 2 DECR2 chr16:456346 3'AG 456346 Downstream 5bp 19402 chr16 456350 456350 1 + G T LUAD 456351 + 456331 456371 41 CTTCTGGTTTTGCAGGCACGGCTGCCATACGGTGATTGCCA CTTCTGGTTTTGCAGGCACTGCTGCCATACGGTGATTGCCA < 41bp 0.596352375433355 0.848526572190888 NA NA prediction 0.504348393515065 Functional Gain - DECR2 ENSG00000103202;ENSG00000242612 CDS Human protein_coding chr16:456351 chr16:456350 nonsynonymous SNV 0.587 4 20 hm7G_associated_SNPs_20834 0 0 1 0 2 DECR2 chr16:456397 5'GT 456397 Upstream 48bp 19403 chr5 61676974 61676974 1 + G T UCEC 61676975 + 61676955 61676995 41 GGTGGTTAGAAGATGAAAAGGCCCTCTTAGAGATGACTGAA GGTGGTTAGAAGATGAAAATGCCCTCTTAGAGATGACTGAA < 41bp 0.615941297228252 0.868111648298499 NA NA prediction 0.504340702140494 Functional Gain - KIF2A ENSG00000068796 CDS Human protein_coding chr5:61676975 chr5:61676974 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20836 0 0 1 0 1 KIF2A chr5:61676945 3'AG 61676945 Downstream 30bp 19404 chr13 60616864 60616864 1 + G T STAD 60616865 + 60616845 60616885 41 GACACTCGGAGAGACTCCAGGCATGTGACAAGTCTCTCATC GACACTCGGAGAGACTCCATGCATGTGACAAGTCTCTCATC < 41bp 0.584523727604596 0.836689809429767 NA NA prediction 0.504332163650342 Functional Gain - DIAPH3 ENSG00000139734 CDS Human antisense chr13:60616865 chr13:60616864 nonsynonymous SNV 0.038 5 20 hm7G_associated_SNPs_20837 0 0 0 0 2 DIAPH3-AS1 chr13:60616815 3'AG 60616815 Downstream 50bp 19405 chr13 60616864 60616864 1 + G T STAD 60616865 + 60616845 60616885 41 GACACTCGGAGAGACTCCAGGCATGTGACAAGTCTCTCATC GACACTCGGAGAGACTCCATGCATGTGACAAGTCTCTCATC < 41bp 0.584523727604596 0.836689809429767 NA NA prediction 0.504332163650342 Functional Gain - DIAPH3 ENSG00000139734 CDS Human protein_coding chr13:60616865 chr13:60616864 nonsynonymous SNV 0.038 5 20 hm7G_associated_SNPs_20837 0 0 0 0 2 DIAPH3 chr13:60616923 5'GT 60616923 Upstream 60bp 19406 chr16 31733987 31733987 1 + G T HNSC 31733988 + 31733968 31734008 41 GTGGCCATAGAATTCTCTCGGGAGGAGTGGGAACACCTGGA GTGGCCATAGAATTCTCTCTGGAGGAGTGGGAACACCTGGA < 41bp 0.569163311137208 0.821290029699431 NA NA prediction 0.504253437124446 Functional Gain - ZNF720 ENSG00000197302 CDS Human protein_coding chr16:31733988 chr16:31733987 nonsynonymous SNV 0.597 0 20 hm7G_associated_SNPs_20839 0 0 1 0 2 ZNF720 chr16:31733947 3'AG 31733947 Downstream 41bp 19407 chr16 31733987 31733987 1 + G T HNSC 31733988 + 31733968 31734008 41 GTGGCCATAGAATTCTCTCGGGAGGAGTGGGAACACCTGGA GTGGCCATAGAATTCTCTCTGGAGGAGTGGGAACACCTGGA < 41bp 0.569163311137208 0.821290029699431 NA NA prediction 0.504253437124446 Functional Gain - ZNF720 ENSG00000197302 CDS Human protein_coding chr16:31733988 chr16:31733987 nonsynonymous SNV 0.597 0 20 hm7G_associated_SNPs_20839 0 0 1 0 2 ZNF720 chr16:31734073 5'GT 31734073 Upstream 87bp 19408 chr3 14965551 14965551 1 - C A LUAD 14965550 - 14965530 14965570 41 GGCACTGCCCGAGAAGCGGGGTGAAGACAGCGGGAAGCTCA GGCACTGCCCGAGAAGCGGTGTGAAGACAGCGGGAAGCTCA < 41bp 0.442411624102279 0.752101334982629 NA NA prediction 0.504202669965259 Functional Gain - FGD5 ENSG00000154783 CDS Human antisense chr3:14965550 chr3:14965551 nonsynonymous SNV 0.584 1 20 hm7G_associated_SNPs_20844 0 0 0 0 2 FGD5 chr3:14965484 5'GT 14965484 Upstream 68bp 19409 chr3 14965551 14965551 1 - C A LUAD 14965550 - 14965530 14965570 41 GGCACTGCCCGAGAAGCGGGGTGAAGACAGCGGGAAGCTCA GGCACTGCCCGAGAAGCGGTGTGAAGACAGCGGGAAGCTCA < 41bp 0.442411624102279 0.752101334982629 NA NA prediction 0.504202669965259 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14965550 chr3:14965551 nonsynonymous SNV 0.584 1 20 hm7G_associated_SNPs_20844 0 0 0 0 2 FGD5 chr3:14965605 3'AG 14965605 Downstream 55bp 19410 chr16 84940208 84940208 1 + G T LUSC 84940209 + 84940189 84940229 41 TTCAGCCTGGGGACTCCTCGGGATGGAAAGGCCTTCCGGAT TTCAGCCTGGGGACTCCTCTGGATGGAAAGGCCTTCCGGAT < 41bp 0.604142321661667 0.8562424375207 NA NA prediction 0.504200231718065 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84940209 chr16:84940208 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_20845 0 0 0 0 1 CRISPLD2 chr16:84940194 3'AG 84940194 Downstream 15bp 19411 chr5 140038905 140038905 1 + G T SARC 140038906 + 140038886 140038926 41 TGTGTTCTTTCCAGCCCATGGACGTTGACAAAGGTGAGTTG TGTGTTCTTTCCAGCCCATTGACGTTGACAAAGGTGAGTTG < 41bp 0.618765280337866 0.870849154858017 NA NA prediction 0.504167749040302 Functional Gain - IK ENSG00000113141 CDS Human protein_coding chr5:140038906 chr5:140038905 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_20849 0 0 1 0 2 IK chr5:140038900 3'AG 140038900 Downstream 6bp 19412 chr5 140038905 140038905 1 + G T SARC 140038906 + 140038886 140038926 41 TGTGTTCTTTCCAGCCCATGGACGTTGACAAAGGTGAGTTG TGTGTTCTTTCCAGCCCATTGACGTTGACAAAGGTGAGTTG < 41bp 0.618765280337866 0.870849154858017 NA NA prediction 0.504167749040302 Functional Gain - IK ENSG00000113141 CDS Human protein_coding chr5:140038906 chr5:140038905 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_20849 0 0 1 0 2 IK chr5:140038918 5'GT 140038918 Upstream 14bp 19413 chr6 55223839 55223839 1 + G T LUAD 55223840 + 55223820 55223860 41 ACATAGATATCCTTGGGACGGTCCTTCAAGTGCAATGTACC ACATAGATATCCTTGGGACTGTCCTTCAAGTGCAATGTACC < 41bp 0.433195729171288 0.752083465403916 NA NA prediction 0.504166930807833 Functional Gain - GFRAL ENSG00000187871 CDS Human protein_coding chr6:55223840 chr6:55223839 synonymous SNV . 0 20 hm7G_associated_SNPs_20850 0 0 0 0 1 GFRAL chr6:55223936 5'GT 55223936 Upstream 98bp 19414 chr1 11808504 11808504 1 + G T UCEC 11808505 + 11808485 11808525 41 TGCTGGCCACCATCTTCCTGGACATCGTGCACATCAGCATC TGCTGGCCACCATCTTCCTTGACATCGTGCACATCAGCATC < 41bp 0.399292497443769 0.752065260715098 NA NA prediction 0.504130521430197 Functional Gain - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808505 chr1:11808504 stopgain 0.995 0 20 hm7G_associated_SNPs_20853 0 0 1 0 1 AGTRAP chr1:11808472 3'AG 11808472 Downstream 33bp 19415 chr9 102888741 102888741 1 + G T LUAD 102888742 + 102888722 102888762 41 GCGTGTTGGCTGACAGATTGGATTGTGCAGATGCTCTTCTG GCGTGTTGGCTGACAGATTTGATTGTGCAGATGCTCTTCTG < 41bp 0.546568224258464 0.798631202412492 NA NA prediction 0.504125956308056 Functional Gain - INVS ENSG00000119509 CDS Human protein_coding chr9:102888742 chr9:102888741 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_20854 0 0 1 0 2 INVS chr9:102888665 3'AG 102888665 Downstream 77bp 19416 chr9 102888741 102888741 1 + G T LUAD 102888742 + 102888722 102888762 41 GCGTGTTGGCTGACAGATTGGATTGTGCAGATGCTCTTCTG GCGTGTTGGCTGACAGATTTGATTGTGCAGATGCTCTTCTG < 41bp 0.546568224258464 0.798631202412492 NA NA prediction 0.504125956308056 Functional Gain - INVS ENSG00000119509 CDS Human protein_coding chr9:102888742 chr9:102888741 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_20854 0 0 1 0 2 INVS chr9:102888831 5'GT 102888831 Upstream 91bp 19417 chr13 78188089 78188089 1 + G T LUAD 78188090 + 78188070 78188110 41 AGCTGTCAAAAACACTGATGGGTAAGAGATGGATGTGATTT AGCTGTCAAAAACACTGATTGGTAAGAGATGGATGTGATTT < 41bp 0.586413884623364 0.838467846410226 NA NA prediction 0.504107923573724 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78188090 chr13:78188089 stopgain 0.170 0 20 hm7G_associated_SNPs_20856 0 0 0 0 2 SCEL chr13:78188028 3'AG 78188028 Downstream 62bp 19418 chr13 78188089 78188089 1 + G T LUAD 78188090 + 78188070 78188110 41 AGCTGTCAAAAACACTGATGGGTAAGAGATGGATGTGATTT AGCTGTCAAAAACACTGATTGGTAAGAGATGGATGTGATTT < 41bp 0.586413884623364 0.838467846410226 NA NA prediction 0.504107923573724 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78188090 chr13:78188089 stopgain 0.170 0 20 hm7G_associated_SNPs_20856 0 0 0 0 2 SCEL chr13:78188090 5'GT 78188090 Upstream 2bp 19419 chr19 36351813 36351813 1 + G T LUSC 36351814 + 36351794 36351834 41 TAGTCTCTTTCGTCCAGTTGGGCCGATTCTGCAGGCAAAGC TAGTCTCTTTCGTCCAGTTTGGCCGATTCTGCAGGCAAAGC < 41bp 0.409253781655863 0.752045278841335 NA NA prediction 0.504090557682669 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351814 chr19:36351813 nonsynonymous SNV 0.393 2 20 hm7G_associated_SNPs_20857 0 0 0 0 1 KIRREL2 chr19:36351811 3'AG 36351811 Downstream 3bp 19420 chr11 20628645 20628645 1 + G T LUAD 20628646 + 20628626 20628666 41 GGGCCAGTTTGCCAGCCAGGGACCAGTGTCTGTGTGGAAGG GGGCCAGTTTGCCAGCCAGTGACCAGTGTCTGTGTGGAAGG < 41bp 0.408173158794001 0.752017092020999 NA NA prediction 0.504034184041998 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20628646 chr11:20628645 stopgain 0.977 1 20 hm7G_associated_SNPs_20858 0 0 0 0 2 SLC6A5 chr11:20628553 3'AG 20628553 Downstream 93bp 19421 chr11 20628645 20628645 1 + G T LUAD 20628646 + 20628626 20628666 41 GGGCCAGTTTGCCAGCCAGGGACCAGTGTCTGTGTGGAAGG GGGCCAGTTTGCCAGCCAGTGACCAGTGTCTGTGTGGAAGG < 41bp 0.408173158794001 0.752017092020999 NA NA prediction 0.504034184041998 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20628646 chr11:20628645 stopgain 0.977 1 20 hm7G_associated_SNPs_20858 0 0 0 0 2 SLC6A5 chr11:20628684 5'GT 20628684 Upstream 40bp 19422 chr16 67915420 67915420 1 + G T SARC 67915421 + 67915401 67915441 41 GATGCAGCCATGGGATCCCGGCTCACAGAGCACCAGGTAAG GATGCAGCCATGGGATCCCTGCTCACAGAGCACCAGGTAAG < 41bp 0.630417169289839 0.882425405847836 NA NA prediction 0.504016473115995 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915421 chr16:67915420 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20859 0 0 1 0 2 EDC4 chr16:67915400 3'AG 67915400 Downstream 21bp 19423 chr16 67915420 67915420 1 + G T SARC 67915421 + 67915401 67915441 41 GATGCAGCCATGGGATCCCGGCTCACAGAGCACCAGGTAAG GATGCAGCCATGGGATCCCTGCTCACAGAGCACCAGGTAAG < 41bp 0.630417169289839 0.882425405847836 NA NA prediction 0.504016473115995 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67915421 chr16:67915420 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_20859 0 0 1 0 2 EDC4 chr16:67915436 5'GT 67915436 Upstream 17bp 19424 chr11 121460827 121460827 1 + G T UCEC 121460828 + 121460808 121460848 41 CACTGCATCCCCAACAGATGGAAATGTGACAGGGAGAACGA CACTGCATCCCCAACAGATTGAAATGTGACAGGGAGAACGA < 41bp 0.416541564928939 0.752006199670041 NA NA prediction 0.504012399340082 Functional Gain - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121460828 chr11:121460827 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20860 0 0 1 0 2 SORL1 chr11:121460749 3'AG 121460749 Downstream 79bp 19425 chr11 121460827 121460827 1 + G T UCEC 121460828 + 121460808 121460848 41 CACTGCATCCCCAACAGATGGAAATGTGACAGGGAGAACGA CACTGCATCCCCAACAGATTGAAATGTGACAGGGAGAACGA < 41bp 0.416541564928939 0.752006199670041 NA NA prediction 0.504012399340082 Functional Gain - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121460828 chr11:121460827 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20860 0 0 1 0 2 SORL1 chr11:121460883 5'GT 121460883 Upstream 57bp 19426 chr3 196159229 196159229 1 - C A UCEC 196159228 - 196159208 196159248 41 CGGCGTCCTCGGCGCTGAAGGGGTTAATTCAACAGTTCACC CGGCGTCCTCGGCGCTGAATGGGTTAATTCAACAGTTCACC < 41bp 0.436246383237875 0.751988059316492 NA NA prediction 0.503976118632984 Functional Gain - UBXN7 ENSG00000163960 CDS Human protein_coding chr3:196159228 chr3:196159229 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_20862 0 0 1 0 1 UBXN7 chr3:196159198 5'GT 196159198 Upstream 32bp 19427 chrX 154282908 154282908 1 + G T LUAD 154282909 + 154282889 154282929 41 AGAATGTTCTAGTAACTGGGGGATTTTTCGGAGGCTTTCTG AGAATGTTCTAGTAACTGGTGGATTTTTCGGAGGCTTTCTG < 41bp 0.592550682990837 0.844534218339441 NA NA prediction 0.503967070697207 Functional Gain - FUNDC2 ENSG00000165775 CDS Human protein_coding chrX:154282909 chrX:154282908 synonymous SNV . 0 20 hm7G_associated_SNPs_20863 0 0 1 0 1 FUNDC2 chrX:154282870 3'AG 154282870 Downstream 39bp 19428 chr2 201477461 201477461 1 + G T UCEC 201477462 + 201477442 201477482 41 GTTATGCATCTCATATGGAGGCGTTGGTCCAGCCACCATCT GTTATGCATCTCATATGGATGCGTTGGTCCAGCCACCATCT < 41bp 0.415092255693606 0.751981396066155 NA NA prediction 0.503962792132311 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201477462 chr2:201477461 nonsynonymous SNV 0.775 3 20 hm7G_associated_SNPs_20864 0 0 0 0 1 AOX1 chr2:201477516 5'GT 201477516 Upstream 56bp 19429 chr10 106121897 106121897 1 + G T GBM 106121898 + 106121878 106121918 41 TGACCAAACTAGTGGAGCAGGGGTCTGGACTGTCAATGGAC TGACCAAACTAGTGGAGCATGGGTCTGGACTGTCAATGGAC < 41bp 0.430660783652424 0.751975928524673 NA NA prediction 0.503951857049345 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106121898 chr10:106121897 nonsynonymous SNV 0.818 2 20 hm7G_associated_SNPs_20866 0 0 0 0 1 CFAP58 chr10:106121929 5'GT 106121929 Upstream 33bp 19430 chr17 56271387 56271387 1 + G T UCEC 56271388 + 56271368 56271408 41 GGCTGCCCGCCGAGTATGAGGATGGGCTGTCGCTCCCCTTC GGCTGCCCGCCGAGTATGATGATGGGCTGTCGCTCCCCTTC < 41bp 0.400721106025852 0.751974548914208 NA NA prediction 0.503949097828415 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56271388 chr17:56271387 nonsynonymous SNV 0.203 4 20 hm7G_associated_SNPs_20867 0 0 0 0 2 EPX chr17:56271324 3'AG 56271324 Downstream 64bp 19431 chr17 56271387 56271387 1 + G T UCEC 56271388 + 56271368 56271408 41 GGCTGCCCGCCGAGTATGAGGATGGGCTGTCGCTCCCCTTC GGCTGCCCGCCGAGTATGATGATGGGCTGTCGCTCCCCTTC < 41bp 0.400721106025852 0.751974548914208 NA NA prediction 0.503949097828415 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56271388 chr17:56271387 nonsynonymous SNV 0.203 4 20 hm7G_associated_SNPs_20867 0 0 0 0 2 EPX chr17:56271453 5'GT 56271453 Upstream 67bp 19432 chr11 125462748 125462748 1 + G T rs548658418 125462749 + 125462729 125462769 41 GCGGACCCGGCTCCTGCCAGGGTTGGGTGCGCCGCTGAACG GCGGACCCGGCTCCTGCCATGGTTGGGTGCGCCGCTGAACG < 41bp 0.598023809886906 0.849983830458183 NA NA prediction 0.503920041142555 Functional Gain - STT3A ENSG00000134910 UTR5 Human protein_coding chr11:125462749 chr11:125462748 . . 0 20 hm7G_associated_SNPs_20869 0 0 1 0 1 STT3A chr11:125462813 5'GT 125462813 Upstream 66bp 19433 chr17 62078510 62078510 1 + G T UCEC 62078511 + 62078491 62078531 41 GATGGACGTGCGGGAGAAAGGGCCTTTGGTGTTTCACCACC GATGGACGTGCGGGAGAAATGGCCTTTGGTGTTTCACCACC < 41bp 0.410500074600717 0.751950134229432 NA NA prediction 0.503900268458864 Functional Gain - PRR29 ENSG00000224383 CDS Human protein_coding chr17:62078511 chr17:62078510 nonsynonymous SNV 0.441 3 20 hm7G_associated_SNPs_20870 0 0 0 0 1 PRR29 chr17:62078444 3'AG 62078444 Downstream 67bp 19434 chr15 91423416 91423416 1 + G T LUSC 91423417 + 91423397 91423437 41 CTGGAGCACGCTCAGGCGCGGCTCACCCTGTCCTATAATCG CTGGAGCACGCTCAGGCGCTGCTCACCCTGTCCTATAATCG < 41bp 0.403133315605849 0.751940888428907 NA NA prediction 0.503881776857815 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91423417 chr15:91423416 nonsynonymous SNV 0.867 2 20 hm7G_associated_SNPs_20871 0 0 1 0 2 FURIN chr15:91423324 3'AG 91423324 Downstream 93bp 19435 chr15 91423416 91423416 1 + G T LUSC 91423417 + 91423397 91423437 41 CTGGAGCACGCTCAGGCGCGGCTCACCCTGTCCTATAATCG CTGGAGCACGCTCAGGCGCTGCTCACCCTGTCCTATAATCG < 41bp 0.403133315605849 0.751940888428907 NA NA prediction 0.503881776857815 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91423417 chr15:91423416 nonsynonymous SNV 0.867 2 20 hm7G_associated_SNPs_20871 0 0 1 0 2 FURIN chr15:91423503 5'GT 91423503 Upstream 88bp 19436 chr18 48458661 48458661 1 + G T UCEC 48458662 + 48458642 48458682 41 TGCCAGTGGCAGTCCATTTGGGCCAGTGAAACTTACAGATG TGCCAGTGGCAGTCCATTTTGGCCAGTGAAACTTACAGATG < 41bp 0.423085468206054 0.751866175137128 NA NA prediction 0.503732350274255 Functional Gain - ME2 ENSG00000082212 CDS Human protein_coding chr18:48458662 chr18:48458661 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_20873 0 0 1 0 2 ME2 chr18:48458628 3'AG 48458628 Downstream 34bp 19437 chr18 48458661 48458661 1 + G T UCEC 48458662 + 48458642 48458682 41 TGCCAGTGGCAGTCCATTTGGGCCAGTGAAACTTACAGATG TGCCAGTGGCAGTCCATTTTGGCCAGTGAAACTTACAGATG < 41bp 0.423085468206054 0.751866175137128 NA NA prediction 0.503732350274255 Functional Gain - ME2 ENSG00000082212 CDS Human protein_coding chr18:48458662 chr18:48458661 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_20873 0 0 1 0 2 ME2 chr18:48458730 5'GT 48458730 Upstream 70bp 19438 chr11 111965601 111965601 1 + G T ESCA 111965602 + 111965582 111965622 41 CTGCCAAGGCAGGGCTTTTGGCACTTTCAGCTTTAACCTTT CTGCCAAGGCAGGGCTTTTTGCACTTTCAGCTTTAACCTTT < 41bp 0.434163109714139 0.75184689536514 NA NA prediction 0.503693790730281 Functional Gain - SDHD ENSG00000204370 CDS Human protein_coding chr11:111965602 chr11:111965601 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_20874 0 0 1 0 1 SDHD chr11:111965529 3'AG 111965529 Downstream 73bp 19439 chr7 134346797 134346797 1 + G T LUAD 134346798 + 134346778 134346818 41 TGCTCCCGAAGTATTACGTGGCAAAACCATTCTGATATCTG TGCTCCCGAAGTATTACGTTGCAAAACCATTCTGATATCTG < 41bp 0.424084169681474 0.751846280693842 NA NA prediction 0.503692561387683 Functional Gain - BPGM ENSG00000172331 CDS Human protein_coding chr7:134346798 chr7:134346797 nonsynonymous SNV 0.412 4 20 hm7G_associated_SNPs_20875 0 0 1 0 1 BPGM chr7:134346860 5'GT 134346860 Upstream 64bp 19440 chr3 119109756 119109756 1 + G T LUSC 119109757 + 119109737 119109777 41 CTGCTCGCAAGGAAAGGAGGGAGAACAGCCTGCCTGAGATT CTGCTCGCAAGGAAAGGAGTGAGAACAGCCTGCCTGAGATT < 41bp 0.406179420382785 0.751844916835452 NA NA prediction 0.503689833670903 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119109757 chr3:119109756 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_20876 0 0 0 0 1 ARHGAP31 chr3:119109830 5'GT 119109830 Upstream 75bp 19441 chr16 31487862 31487862 1 + G T LIHC 31487863 + 31487843 31487883 41 TTTCTGCTGCGTCAGTTGCGGGGAGCCCTTCGGAGATGAGG TTTCTGCTGCGTCAGTTGCTGGGAGCCCTTCGGAGATGAGG < 41bp 0.626884772289853 0.878728693581829 NA NA prediction 0.503687842583952 Functional Gain - TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31487863 chr16:31487862 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_20877 0 0 0 0 1 TGFB1I1 chr16:31487802 3'AG 31487802 Downstream 61bp 19442 chr16 70500067 70500067 1 + G T LUAD 70500068 + 70500048 70500088 41 CCTTTGATGACTGTGGCAGGGCTTTCACCTGCCTCCCCGTG CCTTTGATGACTGTGGCAGTGCTTTCACCTGCCTCCCCGTG < 41bp 0.402830983532047 0.75182623397114 NA NA prediction 0.50365246794228 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70500068 chr16:70500067 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_20878 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 94bp 19443 chr2 233390970 233390970 1 + G T LUSC 233390971 + 233390951 233390991 41 GGCTGCTGGCTGCCCTGGCGGTGTGTGGTAAGGGAAGACAC GGCTGCTGGCTGCCCTGGCTGTGTGTGGTAAGGGAAGACAC < 41bp 0.43435273364989 0.751818843293693 NA NA prediction 0.503637686587387 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233390971 chr2:233390970 synonymous SNV . 0 20 hm7G_associated_SNPs_20879 0 0 0 0 1 CHRND chr2:233390977 5'GT 233390977 Upstream 8bp 19444 chr3 112998237 112998237 1 + G T UCEC 112998238 + 112998218 112998258 41 CTAAAGAAAGTGGGAGACTGGATTCTGGCCACCAGCGCCAT CTAAAGAAAGTGGGAGACTTGATTCTGGCCACCAGCGCCAT < 41bp 0.630095766176882 0.881896364950751 NA NA prediction 0.503601197547739 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112998238 chr3:112998237 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20882 0 0 0 0 1 BOC chr3:112998302 5'GT 112998302 Upstream 66bp 19445 chr11 112050200 112050200 1 + G T COAD 112050201 + 112050181 112050221 41 GGAAATTCGAGTTTGGGAAGGATAAGTAAGCCTTGATTTTG GGAAATTCGAGTTTGGGAATGATAAGTAAGCCTTGATTTTG < 41bp 0.438999880261137 0.751798613853378 NA NA prediction 0.503597227706756 Functional Gain - BCO2 ENSG00000197580;ENSG00000272790 CDS Human other chr11:112050201 chr11:112050200 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_20883 0 0 0 0 1 BCO2 chr11:112050205 5'GT 112050205 Upstream 6bp 19446 chr5 23524554 23524554 1 + G T BLCA 23524555 + 23524535 23524575 41 GGCCAGGCTGTGAACTGCTGGTCTGGTATGGGGATGAATAC GGCCAGGCTGTGAACTGCTTGTCTGGTATGGGGATGAATAC < 41bp 0.417533851970828 0.751797489033373 NA NA prediction 0.503594978066746 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524555 chr5:23524554 synonymous SNV . 0 20 hm7G_associated_SNPs_20884 0 0 0 0 1 PRDM9 chr5:23524636 5'GT 23524636 Upstream 83bp 19447 chr6 74189761 74189761 1 + G T COAD 74189762 + 74189742 74189782 41 CTGACCTTATCTACCCACAGGGGTTATCTATGACGCTACCA CTGACCTTATCTACCCACATGGGTTATCTATGACGCTACCA < 41bp 0.406649148940194 0.751797361366409 NA NA prediction 0.503594722732818 Functional Gain - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74189762 chr6:74189761 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_20885 0 0 1 0 1 MTO1 chr6:74189849 5'GT 74189849 Upstream 89bp 19448 chr1 158326366 158326366 1 + G T LUAD 158326367 + 158326347 158326387 41 TTGGTTGTAGTTGACTCACGGTTAAAAAAACAGAGGTGAGC TTGGTTGTAGTTGACTCACTGTTAAAAAAACAGAGGTGAGC < 41bp 0.530158777911264 0.781953862200569 NA NA prediction 0.50359016857861 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158326367 chr1:158326366 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_20886 0 0 0 0 2 CD1E chr1:158326288 3'AG 158326288 Downstream 79bp 19449 chr1 158326366 158326366 1 + G T LUAD 158326367 + 158326347 158326387 41 TTGGTTGTAGTTGACTCACGGTTAAAAAAACAGAGGTGAGC TTGGTTGTAGTTGACTCACTGTTAAAAAAACAGAGGTGAGC < 41bp 0.530158777911264 0.781953862200569 NA NA prediction 0.50359016857861 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158326367 chr1:158326366 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_20886 0 0 0 0 2 CD1E chr1:158326381 5'GT 158326381 Upstream 16bp 19450 chr7 141800645 141800645 1 + G T UCEC 141800646 + 141800626 141800666 41 AATTGCCTTGGATGATGAAGGAACTGCTGGGGGCTGGCTCT AATTGCCTTGGATGATGAATGAACTGCTGGGGGCTGGCTCT < 41bp 0.613897129253691 0.865691495006843 NA NA prediction 0.503588731506305 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141800646 chr7:141800645 stopgain 0.839 0 20 hm7G_associated_SNPs_20887 0 0 0 0 2 MGAM chr7:141800602 3'AG 141800602 Downstream 44bp 19451 chr7 141800645 141800645 1 + G T UCEC 141800646 + 141800626 141800666 41 AATTGCCTTGGATGATGAAGGAACTGCTGGGGGCTGGCTCT AATTGCCTTGGATGATGAATGAACTGCTGGGGGCTGGCTCT < 41bp 0.613897129253691 0.865691495006843 NA NA prediction 0.503588731506305 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141800646 chr7:141800645 stopgain 0.839 0 20 hm7G_associated_SNPs_20887 0 0 0 0 2 MGAM chr7:141800690 5'GT 141800690 Upstream 46bp 19452 chr3 183862423 183862423 1 + G T UCEC 183862424 + 183862404 183862444 41 AGCTGGAGATCCTGGCTGAGGAAACAATTCTGAGCTGGTTC AGCTGGAGATCCTGGCTGATGAAACAATTCTGAGCTGGTTC < 41bp 0.623408470271714 0.875198776737453 NA NA prediction 0.50358061293148 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183862424 chr3:183862423 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20888 0 0 1 0 2 EIF2B5 chr3:183862385 3'AG 183862385 Downstream 39bp 19453 chr3 183862423 183862423 1 + G T UCEC 183862424 + 183862404 183862444 41 AGCTGGAGATCCTGGCTGAGGAAACAATTCTGAGCTGGTTC AGCTGGAGATCCTGGCTGATGAAACAATTCTGAGCTGGTTC < 41bp 0.623408470271714 0.875198776737453 NA NA prediction 0.50358061293148 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183862424 chr3:183862423 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_20888 0 0 1 0 2 EIF2B5 chr3:183862495 5'GT 183862495 Upstream 73bp 19454 chr17 7907072 7907072 1 + G T LUSC 7907073 + 7907053 7907093 41 CTGAGGAAGGTTCGGGACGGGCCCAGGGTCACAGGTAGGCT CTGAGGAAGGTTCGGGACGTGCCCAGGGTCACAGGTAGGCT < 41bp 0.418654402763703 0.751787103646355 NA NA prediction 0.503574207292711 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7907073 chr17:7907072 nonsynonymous SNV 0.843 2 20 hm7G_associated_SNPs_20889 0 0 0 0 1 GUCY2D chr17:7907086 5'GT 7907086 Upstream 15bp 19455 chr7 106685640 106685640 1 + G T rs115878034 106685641 + 106685621 106685661 41 AGGAGGAGGCGGCGCCCGCGGACGCAGGGGCGTTCAATGGT AGGAGGAGGCGGCGCCCGCTGACGCAGGGGCGTTCAATGGT < 41bp 0.607802637873652 0.859550967360688 NA NA prediction 0.503496658974073 Functional Gain - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106685641 chr7:106685640 synonymous SNV . 0 20 hm7G_associated_SNPs_20897 0 0 1 0 1 PRKAR2B chr7:106685659 5'GT 106685659 Upstream 20bp 19456 chr10 96534881 96534881 1 + G T LUAD 96534882 + 96534862 96534902 41 ACGCATGGTGGTGCTGCATGGATATGAAGTGGTGAAGGAAG ACGCATGGTGGTGCTGCATTGATATGAAGTGGTGAAGGAAG < 41bp 0.62472522741619 0.876472899031762 NA NA prediction 0.503495343231143 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96534882 chr10:96534881 stopgain 0.193 0 20 hm7G_associated_SNPs_20898 0 0 0 0 2 CYP2C19 chr10:96534815 3'AG 96534815 Downstream 67bp 19457 chr10 96534881 96534881 1 + G T LUAD 96534882 + 96534862 96534902 41 ACGCATGGTGGTGCTGCATGGATATGAAGTGGTGAAGGAAG ACGCATGGTGGTGCTGCATTGATATGAAGTGGTGAAGGAAG < 41bp 0.62472522741619 0.876472899031762 NA NA prediction 0.503495343231143 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96534882 chr10:96534881 stopgain 0.193 0 20 hm7G_associated_SNPs_20898 0 0 0 0 2 CYP2C19 chr10:96534977 5'GT 96534977 Upstream 97bp 19458 chr17 41577435 41577435 1 + G T LUAD 41577436 + 41577416 41577456 41 GATGGATTCTATTCCCATGGGACTCAACAAACACTGGGTTG GATGGATTCTATTCCCATGTGACTCAACAAACACTGGGTTG < 41bp 0.422424675108268 0.751741384242182 NA NA prediction 0.503482768484364 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41577436 chr17:41577435 stopgain 0.998 1 20 hm7G_associated_SNPs_20900 0 0 1 0 1 DHX8 chr17:41577471 5'GT 41577471 Upstream 37bp 19459 chr12 124203214 124203214 1 + G T UCEC 124203215 + 124203195 124203235 41 AAAGAAAATTTGTTGGTGAGGTGAAGAGGTGTGAAGAGCTA AAAGAAAATTTGTTGGTGATGTGAAGAGGTGTGAAGAGCTA < 41bp 0.605105192555208 0.856838162466507 NA NA prediction 0.503465939822599 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124203215 chr12:124203214 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_20901 0 0 1 0 2 ATP6V0A2 chr12:124203170 3'AG 124203170 Downstream 45bp 19460 chr12 124203214 124203214 1 + G T UCEC 124203215 + 124203195 124203235 41 AAAGAAAATTTGTTGGTGAGGTGAAGAGGTGTGAAGAGCTA AAAGAAAATTTGTTGGTGATGTGAAGAGGTGTGAAGAGCTA < 41bp 0.605105192555208 0.856838162466507 NA NA prediction 0.503465939822599 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124203215 chr12:124203214 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_20901 0 0 1 0 2 ATP6V0A2 chr12:124203248 5'GT 124203248 Upstream 35bp 19461 chr8 11420536 11420536 1 + G T LUAD 11420537 + 11420517 11420557 41 CCGGAAGCCATCCACTTCGGGGTCTTCACCATCAAAGCAGA CCGGAAGCCATCCACTTCGTGGTCTTCACCATCAAAGCAGA < 41bp 0.405471093174805 0.751703922071885 NA NA prediction 0.503407844143771 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11420537 chr8:11420536 nonsynonymous SNV 0.920 5 20 hm7G_associated_SNPs_20906 0 0 0 0 2 BLK chr8:11420488 3'AG 11420488 Downstream 49bp 19462 chr8 11420536 11420536 1 + G T LUAD 11420537 + 11420517 11420557 41 CCGGAAGCCATCCACTTCGGGGTCTTCACCATCAAAGCAGA CCGGAAGCCATCCACTTCGTGGTCTTCACCATCAAAGCAGA < 41bp 0.405471093174805 0.751703922071885 NA NA prediction 0.503407844143771 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11420537 chr8:11420536 nonsynonymous SNV 0.920 5 20 hm7G_associated_SNPs_20906 0 0 0 0 2 BLK chr8:11420619 5'GT 11420619 Upstream 84bp 19463 chr8 22865171 22865171 1 + G T UCEC 22865172 + 22865152 22865192 41 CCAACATTCTCAACAATGAGGCCTTCATGAACCAGGAGATC CCAACATTCTCAACAATGATGCCTTCATGAACCAGGAGATC < 41bp 0.409320501375777 0.75167726207952 NA NA prediction 0.50335452415904 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865172 chr8:22865171 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_20908 0 0 0 0 1 RHOBTB2 chr8:22865259 5'GT 22865259 Upstream 89bp 19464 chr16 1261227 1261227 1 + G T LUAD 1261228 + 1261208 1261248 41 ACGCTGATATCATCACTCAGGCCCATTGGGAACATCGTCCT ACGCTGATATCATCACTCATGCCCATTGGGAACATCGTCCT < 41bp 0.402976006837724 0.751656630923355 NA NA prediction 0.50331326184671 Functional Gain - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1261228 chr16:1261227 nonsynonymous SNV 0.856 5 20 hm7G_associated_SNPs_20912 0 0 0 0 1 CACNA1H chr16:1261294 5'GT 1261294 Upstream 68bp 19465 chr20 61869820 61869820 1 + G T ACC 61869821 + 61869801 61869841 41 AGACTCACTCCCAGCTGCTGGGCTCCTGGGTGAGCGCCACC AGACTCACTCCCAGCTGCTTGGCTCCTGGGTGAGCGCCACC < 41bp 0.404002388200538 0.751654264240668 NA NA prediction 0.503308528481337 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869821 chr20:61869820 synonymous SNV . 0 20 hm7G_associated_SNPs_20913 0 0 0 0 2 BIRC7 chr20:61869748 3'AG 61869748 Downstream 73bp 19466 chr20 61869820 61869820 1 + G T ACC 61869821 + 61869801 61869841 41 AGACTCACTCCCAGCTGCTGGGCTCCTGGGTGAGCGCCACC AGACTCACTCCCAGCTGCTTGGCTCCTGGGTGAGCGCCACC < 41bp 0.404002388200538 0.751654264240668 NA NA prediction 0.503308528481337 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869821 chr20:61869820 synonymous SNV . 0 20 hm7G_associated_SNPs_20913 0 0 0 0 2 BIRC7 chr20:61869829 5'GT 61869829 Upstream 10bp 19467 chr3 179332786 179332786 1 + G T LUAD 179332787 + 179332767 179332807 41 CGACACAGTGGAGACCATGGGAAAAGACTATTTGTCATCAG CGACACAGTGGAGACCATGTGAAAAGACTATTTGTCATCAG < 41bp 0.464206901037491 0.75164094092938 NA NA prediction 0.50328188185876 Functional Gain - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179332787 chr3:179332786 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20915 0 0 1 0 2 NDUFB5 chr3:179332759 3'AG 179332759 Downstream 28bp 19468 chr3 179332786 179332786 1 + G T LUAD 179332787 + 179332767 179332807 41 CGACACAGTGGAGACCATGGGAAAAGACTATTTGTCATCAG CGACACAGTGGAGACCATGTGAAAAGACTATTTGTCATCAG < 41bp 0.464206901037491 0.75164094092938 NA NA prediction 0.50328188185876 Functional Gain - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179332787 chr3:179332786 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_20915 0 0 1 0 2 NDUFB5 chr3:179332847 5'GT 179332847 Upstream 62bp 19469 chr19 36227814 36227814 1 + G T LUAD 36227815 + 36227795 36227835 41 GCTCTGCTGTCTCCCCAGGGGCGTGGAGAACTCTGATCGAG GCTCTGCTGTCTCCCCAGGTGCGTGGAGAACTCTGATCGAG < 41bp 0.415812642641421 0.751629233311293 NA NA prediction 0.503258466622586 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227815 chr19:36227814 synonymous SNV . 0 20 hm7G_associated_SNPs_20918 0 0 1 0 3 KMT2B chr19:36227728 3'AG 36227728 Downstream 87bp 19470 chr19 36227814 36227814 1 + G T LUAD 36227815 + 36227795 36227835 41 GCTCTGCTGTCTCCCCAGGGGCGTGGAGAACTCTGATCGAG GCTCTGCTGTCTCCCCAGGTGCGTGGAGAACTCTGATCGAG < 41bp 0.415812642641421 0.751629233311293 NA NA prediction 0.503258466622586 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227815 chr19:36227814 synonymous SNV . 0 20 hm7G_associated_SNPs_20918 0 0 1 0 3 KMT2B chr19:36227813 3'AG 36227813 Downstream 2bp 19471 chr19 36227814 36227814 1 + G T LUAD 36227815 + 36227795 36227835 41 GCTCTGCTGTCTCCCCAGGGGCGTGGAGAACTCTGATCGAG GCTCTGCTGTCTCCCCAGGTGCGTGGAGAACTCTGATCGAG < 41bp 0.415812642641421 0.751629233311293 NA NA prediction 0.503258466622586 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36227815 chr19:36227814 synonymous SNV . 0 20 hm7G_associated_SNPs_20918 0 0 1 0 3 KMT2B chr19:36227887 5'GT 36227887 Upstream 74bp 19472 chr15 42127420 42127420 1 + G T rs75094146 42127421 + 42127401 42127441 41 CCTGGGCCTCCGAAGCCCTGGGTGAGTGGAGGTGGGGTGGT CCTGGGCCTCCGAAGCCCTTGGTGAGTGGAGGTGGGGTGGT < 41bp 0.633536398897008 0.885150352558804 NA NA prediction 0.503227907323592 Functional Gain - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127421 chr15:42127420 synonymous SNV . 0 20 hm7G_associated_SNPs_20919 0 0 1 0 1 JMJD7;JMJD7-PLA2G4B chr15:42127421 5'GT 42127421 Upstream 2bp 19473 chr1 17298869 17298869 1 + G T LUSC 17298870 + 17298850 17298890 41 CCCAGGTGTCCACACTGAAGGGCCAGCTGCAGCAGGAGCTT CCCAGGTGTCCACACTGAATGGCCAGCTGCAGCAGGAGCTT < 41bp 0.428858758052082 0.751611412431294 NA NA prediction 0.503222824862587 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17298870 chr1:17298869 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_20921 0 0 0 0 1 CROCC chr1:17298855 3'AG 17298855 Downstream 15bp 19474 chr1 160106360 160106360 1 + G T UCEC 160106361 + 160106341 160106381 41 TTTGGCCCTCTACCCACAGGGATGATCCAGGCACTGGGTGG TTTGGCCCTCTACCCACAGTGATGATCCAGGCACTGGGTGG < 41bp 0.41307703849008 0.751599156382091 NA NA prediction 0.503198312764182 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160106361 chr1:160106360 nonsynonymous SNV 0.970 5 20 hm7G_associated_SNPs_20922 0 0 0 0 1 ATP1A2 chr1:160106360 3'AG 160106360 Downstream 1bp 19475 chr11 101829016 101829016 1 + G T HNSC 101829017 + 101828997 101829037 41 AAAACATGAGGGCAACCTTGGCTACTAGCAAAAATGTGTTC AAAACATGAGGGCAACCTTTGCTACTAGCAAAAATGTGTTC < 41bp 0.42320358095976 0.751595326443234 NA NA prediction 0.503190652886468 Functional Gain - CEP126 ENSG00000110318 CDS Human protein_coding chr11:101829017 chr11:101829016 nonsynonymous SNV 0.853 2 20 hm7G_associated_SNPs_20923 0 0 0 0 1 CEP126 chr11:101829097 5'GT 101829097 Upstream 82bp 19476 chr1 33959145 33959145 1 + G T LUAD 33959146 + 33959126 33959166 41 CTGAGACTGATGCCCAGGAGGCCTGGGGTGAAGTGGCCAAT CTGAGACTGATGCCCAGGATGCCTGGGGTGAAGTGGCCAAT < 41bp 0.630689768681651 0.882281789863642 NA NA prediction 0.503184042363982 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33959146 chr1:33959145 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_20925 0 0 1 0 1 ZSCAN20 chr1:33959215 5'GT 33959215 Upstream 71bp 19477 chr10 82112220 82112220 1 - C A LUAD 82112219 - 82112199 82112239 41 ATAAGGAAAATGTGACCATGGAACAACTGGTAAGTAGGAAT ATAAGGAAAATGTGACCATTGAACAACTGGTAAGTAGGAAT < 41bp 0.432022911205665 0.751591887393561 NA NA prediction 0.503183774787123 Functional Gain - DYDC1 ENSG00000170788 CDS Human protein_coding chr10:82112219 chr10:82112220 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_20926 0 0 0 0 1 DYDC1 chr10:82112211 5'GT 82112211 Upstream 10bp 19478 chr4 15780186 15780186 1 + G T HNSC 15780187 + 15780167 15780207 41 CCGAGGTGGCGCCAGCAGTGGAGCGGTCCGGGCACCACCAA CCGAGGTGGCGCCAGCAGTTGAGCGGTCCGGGCACCACCAA < 41bp 0.423493118634276 0.751591232825356 NA NA prediction 0.503182465650713 Functional Gain - CD38 ENSG00000004468 CDS Human protein_coding chr4:15780187 chr4:15780186 nonsynonymous SNV 0.011 4 20 hm7G_associated_SNPs_20927 0 0 0 0 1 CD38 chr4:15780270 5'GT 15780270 Upstream 85bp 19479 chr17 28407923 28407923 1 + G T LUAD 28407924 + 28407904 28407944 41 GCATATATGAGGATCTTTGGGGTCTTGGCTGTTGATACCCT GCATATATGAGGATCTTTGTGGTCTTGGCTGTTGATACCCT < 41bp 0.421817768106562 0.751581337284631 NA NA prediction 0.503162674569262 Functional Gain - EFCAB5 ENSG00000176927 CDS Human protein_coding chr17:28407924 chr17:28407923 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_20929 0 0 0 0 1 EFCAB5 chr17:28407999 5'GT 28407999 Upstream 77bp 19480 chr3 44351374 44351374 1 + G T UCEC 44351375 + 44351355 44351395 41 ACACTTTACAAGTTTAAAAGGACTTATAGGGCCTGAGAAGT ACACTTTACAAGTTTAAAATGACTTATAGGGCCTGAGAAGT < 41bp 0.594824547527267 0.846388983768136 NA NA prediction 0.503128872481739 Functional Gain - TOPAZ1 ENSG00000173769 CDS Human protein_coding chr3:44351375 chr3:44351374 stopgain 0.999 0 20 hm7G_associated_SNPs_20931 0 0 0 0 1 TOPAZ1 chr3:44351317 3'AG 44351317 Downstream 58bp 19481 chr11 5010971 5010971 1 + G T rs201829333 5010972 + 5010952 5010992 41 GCAACAATTCCATCGGAATGGGACAGACCTACTTGACATGC GCAACAATTCCATCGGAATTGGACAGACCTACTTGACATGC < 41bp 0.42406273101357 0.751557759252859 NA NA prediction 0.503115518505718 Functional Gain - MMP26 ENSG00000167346 CDS Human protein_coding chr11:5010972 chr11:5010971 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_20932 0 0 0 0 1 MMP26 chr11:5010878 3'AG 5010878 Downstream 94bp 19482 chr5 7878080 7878080 1 + G T LUAD 7878081 + 7878061 7878101 41 GAACTTGTGGTTGAGCCGTGGATTGCTGGACTCTGGCCAGC GAACTTGTGGTTGAGCCGTTGATTGCTGGACTCTGGCCAGC < 41bp 0.61780144403967 0.869348723411723 NA NA prediction 0.503094558744106 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7878081 chr5:7878080 nonsynonymous SNV 0.943 5 20 hm7G_associated_SNPs_20933 0 0 1 0 1 MTRR chr5:7878057 3'AG 7878057 Downstream 24bp 19483 chr20 16712897 16712897 1 + G T UCEC 16712898 + 16712878 16712918 41 CCATGAAGATGAGGGGGCAGGCCTTTGTCATATTTAAGGAA CCATGAAGATGAGGGGGCATGCCTTTGTCATATTTAAGGAA < 41bp 0.615070304978702 0.866590082743483 NA NA prediction 0.503039555529563 Functional Gain - SNRPB2 ENSG00000125870 CDS Human protein_coding chr20:16712898 chr20:16712897 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20935 0 0 1 0 2 SNRPB2 chr20:16712809 3'AG 16712809 Downstream 89bp 19484 chr20 16712897 16712897 1 + G T UCEC 16712898 + 16712878 16712918 41 CCATGAAGATGAGGGGGCAGGCCTTTGTCATATTTAAGGAA CCATGAAGATGAGGGGGCATGCCTTTGTCATATTTAAGGAA < 41bp 0.615070304978702 0.866590082743483 NA NA prediction 0.503039555529563 Functional Gain - SNRPB2 ENSG00000125870 CDS Human protein_coding chr20:16712898 chr20:16712897 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20935 0 0 1 0 2 SNRPB2 chr20:16712981 5'GT 16712981 Upstream 85bp 19485 chr19 36271129 36271129 1 + G T LUSC 36271130 + 36271110 36271150 41 CAGCTGGACAATCACGGCCGGCGACTGCTCCTCAGTGAGGA CAGCTGGACAATCACGGCCTGCGACTGCTCCTCAGTGAGGA < 41bp 0.407241754703516 0.751519266096911 NA NA prediction 0.503038532193821 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36271130 chr19:36271129 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_20936 0 0 1 0 1 ARHGAP33 chr19:36271113 3'AG 36271113 Downstream 17bp 19486 chr10 116608455 116608455 1 + G T LUAD 116608456 + 116608436 116608476 41 ATCCTCCTACCATGTTGAGGGCACAGGATATGACACTTACC ATCCTCCTACCATGTTGAGTGCACAGGATATGACACTTACC < 41bp 0.621133623967664 0.872633416457498 NA NA prediction 0.502999584979668 Functional Gain - FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116608456 chr10:116608455 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_20939 0 0 0 0 2 FAM160B1 chr10:116608406 3'AG 116608406 Downstream 50bp 19487 chr10 116608455 116608455 1 + G T LUAD 116608456 + 116608436 116608476 41 ATCCTCCTACCATGTTGAGGGCACAGGATATGACACTTACC ATCCTCCTACCATGTTGAGTGCACAGGATATGACACTTACC < 41bp 0.621133623967664 0.872633416457498 NA NA prediction 0.502999584979668 Functional Gain - FAM160B1 ENSG00000151553 CDS Human protein_coding chr10:116608456 chr10:116608455 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_20939 0 0 0 0 2 FAM160B1 chr10:116608496 5'GT 116608496 Upstream 42bp 19488 chr5 134044442 134044442 1 + G T THCA 134044443 + 134044423 134044463 41 GCCAGTCTGAGTGACGCTCGGGATGCTCTAGTGAATGCAGT GCCAGTCTGAGTGACGCTCTGGATGCTCTAGTGAATGCAGT < 41bp 0.605299514336239 0.856792253946121 NA NA prediction 0.502985479219764 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134044443 chr5:134044442 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_20941 0 0 1 0 1 SEC24A chr5:134044403 3'AG 134044403 Downstream 40bp 19489 chr8 144641509 144641509 1 + G T LGG 144641510 + 144641490 144641530 41 TCCCCTCCTCAGGAGCATGGGGTCGGCCTTTGAGCGGGTAG TCCCCTCCTCAGGAGCATGTGGTCGGCCTTTGAGCGGGTAG < 41bp 0.412547953441318 0.751461868809214 NA NA prediction 0.502923737618428 Functional Gain - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144641510 chr8:144641509 nonsynonymous SNV 0.086 2 20 hm7G_associated_SNPs_20944 0 0 1 0 1 GSDMD chr8:144641502 3'AG 144641502 Downstream 8bp 19490 chr3 179501877 179501877 1 + G T LUSC 179501878 + 179501858 179501898 41 AAAGTTTGTGCCTCAGAAAGGCCCCCTAAAGACCTGGGCTA AAAGTTTGTGCCTCAGAAATGCCCCCTAAAGACCTGGGCTA < 41bp 0.596859313468019 0.848310222820597 NA NA prediction 0.502901818705156 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179501878 chr3:179501877 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_20945 0 0 0 0 1 USP13 chr3:179501836 3'AG 179501836 Downstream 42bp 19491 chrX 86887275 86887275 1 + G T LUAD 86887276 + 86887256 86887296 41 ACATATTGGCACCATGAATGGCCGTAGGCTTCAATTTGGAG ACATATTGGCACCATGAATTGCCGTAGGCTTCAATTTGGAG < 41bp 0.423255097281824 0.7514413738732 NA NA prediction 0.502882747746399 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86887276 chrX:86887275 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20946 0 0 0 0 1 KLHL4 chrX:86887210 3'AG 86887210 Downstream 66bp 19492 chr6 110083342 110083342 1 + G T LIHC 110083343 + 110083323 110083363 41 ATGTGATTGCAGAAAGTGTGGTGAAGAAAACAGGTTTCTTT ATGTGATTGCAGAAAGTGTTGTGAAGAAAACAGGTTTCTTT < 41bp 0.430257166530071 0.75142270797034 NA NA prediction 0.50284541594068 Functional Gain - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110083343 chr6:110083342 synonymous SNV . 0 20 hm7G_associated_SNPs_20947 0 0 1 0 2 FIG4 chr6:110083294 3'AG 110083294 Downstream 49bp 19493 chr6 110083342 110083342 1 + G T LIHC 110083343 + 110083323 110083363 41 ATGTGATTGCAGAAAGTGTGGTGAAGAAAACAGGTTTCTTT ATGTGATTGCAGAAAGTGTTGTGAAGAAAACAGGTTTCTTT < 41bp 0.430257166530071 0.75142270797034 NA NA prediction 0.50284541594068 Functional Gain - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110083343 chr6:110083342 synonymous SNV . 0 20 hm7G_associated_SNPs_20947 0 0 1 0 2 FIG4 chr6:110083410 5'GT 110083410 Upstream 69bp 19494 chr5 64931134 64931134 1 + G T LIHC 64931135 + 64931115 64931155 41 TTTTACTTCACAGTGATGCGGCTGACTAAGCCTACTTTATT TTTTACTTCACAGTGATGCTGCTGACTAAGCCTACTTTATT < 41bp 0.445449605981878 0.751364343793296 NA NA prediction 0.502728687586592 Functional Gain - TRAPPC13 ENSG00000113597 CDS Human protein_coding chr5:64931135 chr5:64931134 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_20952 0 0 0 0 2 TRAPPC13 chr5:64931128 3'AG 64931128 Downstream 7bp 19495 chr5 64931134 64931134 1 + G T LIHC 64931135 + 64931115 64931155 41 TTTTACTTCACAGTGATGCGGCTGACTAAGCCTACTTTATT TTTTACTTCACAGTGATGCTGCTGACTAAGCCTACTTTATT < 41bp 0.445449605981878 0.751364343793296 NA NA prediction 0.502728687586592 Functional Gain - TRAPPC13 ENSG00000113597 CDS Human protein_coding chr5:64931135 chr5:64931134 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_20952 0 0 0 0 2 TRAPPC13 chr5:64931196 5'GT 64931196 Upstream 63bp 19496 chr11 112103951 112103951 1 + G T LIHC 112103952 + 112103932 112103972 41 TGCCATACTTTGCAGATGTGGTGAGGTGGGTGGCACTGTAT TGCCATACTTTGCAGATGTTGTGAGGTGGGTGGCACTGTAT < 41bp 0.443598843630262 0.751334442170816 NA NA prediction 0.502668884341632 Functional Gain - PTS ENSG00000150787 CDS Human protein_coding chr11:112103952 chr11:112103951 synonymous SNV . 0 20 hm7G_associated_SNPs_20954 0 0 1 3 2 PTS chr11:112103886 3'AG 112103886 Downstream 66bp 19497 chr11 112103951 112103951 1 + G T LIHC 112103952 + 112103932 112103972 41 TGCCATACTTTGCAGATGTGGTGAGGTGGGTGGCACTGTAT TGCCATACTTTGCAGATGTTGTGAGGTGGGTGGCACTGTAT < 41bp 0.443598843630262 0.751334442170816 NA NA prediction 0.502668884341632 Functional Gain - PTS ENSG00000150787 CDS Human protein_coding chr11:112103952 chr11:112103951 synonymous SNV . 0 20 hm7G_associated_SNPs_20954 0 0 1 3 2 PTS chr11:112103956 5'GT 112103956 Upstream 6bp 19498 chr17 43175846 43175846 1 + G T LUAD 43175847 + 43175827 43175867 41 TCCGAGAGATCACCAGGCGGGTTCACCTGGAGGGCATCTTC TCCGAGAGATCACCAGGCGTGTTCACCTGGAGGGCATCTTC < 41bp 0.625418251612274 0.876742030890192 NA NA prediction 0.502647558555836 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43175847 chr17:43175846 synonymous SNV . 0 20 hm7G_associated_SNPs_20956 0 0 1 0 2 NMT1 chr17:43175750 3'AG 43175750 Downstream 97bp 19499 chr17 43175846 43175846 1 + G T LUAD 43175847 + 43175827 43175867 41 TCCGAGAGATCACCAGGCGGGTTCACCTGGAGGGCATCTTC TCCGAGAGATCACCAGGCGTGTTCACCTGGAGGGCATCTTC < 41bp 0.625418251612274 0.876742030890192 NA NA prediction 0.502647558555836 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43175847 chr17:43175846 synonymous SNV . 0 20 hm7G_associated_SNPs_20956 0 0 1 0 2 NMT1 chr17:43175920 5'GT 43175920 Upstream 75bp 19500 chr5 140308873 140308873 1 + G T PRAD 140308874 + 140308854 140308894 41 ATATCCTGTATTCAGATTCGGAATAGGAAAGGGGATCACGC ATATCCTGTATTCAGATTCTGAATAGGAAAGGGGATCACGC < 41bp 0.590147164735989 0.841461216994736 NA NA prediction 0.502628104517495 Functional Gain - PCDHAC1 ENSG00000248383 CDS Human protein_coding chr5:140308874 chr5:140308873 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_20957 0 0 0 0 1 PCDHAC1 chr5:140308910 5'GT 140308910 Upstream 38bp 19501 chr11 60687374 60687374 1 + G T LGG 60687375 + 60687355 60687395 41 ACACTGGATGCCTGGATTGGGCCAGAGACCATGCACCTGGT ACACTGGATGCCTGGATTGTGCCAGAGACCATGCACCTGGT < 41bp 0.625109969574276 0.876423307972816 NA NA prediction 0.502626676797079 Functional Gain - TMEM109 ENSG00000110108 CDS Human protein_coding chr11:60687375 chr11:60687374 nonsynonymous SNV 0.954 4 20 hm7G_associated_SNPs_20958 0 0 1 0 1 TMEM109 chr11:60687402 5'GT 60687402 Upstream 29bp 19502 chr19 6919687 6919687 1 + G T BLCA 6919688 + 6919668 6919708 41 GATGAATTCTCGAGTCGTTGGGGGCATAATGACTGGAGAGA GATGAATTCTCGAGTCGTTTGGGGCATAATGACTGGAGAGA < 41bp 0.411496002176217 0.751292415577031 NA NA prediction 0.502584831154062 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6919688 chr19:6919687 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_20963 0 0 0 0 1 ADGRE1 chr19:6919758 5'GT 6919758 Upstream 72bp 19503 chr14 74318754 74318754 1 + G T rs2270073 74318755 + 74318735 74318775 41 GACTTCTAGGCGTCCTCCCGGAGCTACCGGGGACACTGGCG GACTTCTAGGCGTCCTCCCTGAGCTACCGGGGACACTGGCG < 41bp 0.51664709091836 0.767937149865662 NA NA prediction 0.502580117894604 Functional Gain - PTGR2 ENSG00000140043;ENSG00000258653 UTR5 Human protein_coding chr14:74318755 chr14:74318754 . . 0 20 hm7G_associated_SNPs_20964 0 0 0 0 1 PTGR2 chr14:74318823 5'GT 74318823 Upstream 70bp 19504 chr1 159275988 159275988 1 + G T LUSC 159275989 + 159275969 159276009 41 TACTGTACGGGCAAAGTGTGGCAGCTGGACTATGAGTCTGA TACTGTACGGGCAAAGTGTTGCAGCTGGACTATGAGTCTGA < 41bp 0.600876012736979 0.852157685315641 NA NA prediction 0.502563345157325 Functional Gain - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159275989 chr1:159275988 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_20965 0 0 0 0 1 FCER1A chr1:159276035 5'GT 159276035 Upstream 48bp 19505 chr1 3347499 3347499 1 + G T COAD 3347500 + 3347480 3347520 41 TAGCCAGTGAGAAGCAGGAGGACGTGGAGGAGGAGGACGAC TAGCCAGTGAGAAGCAGGATGACGTGGAGGAGGAGGACGAC < 41bp 0.621220573951962 0.872502143580242 NA NA prediction 0.50256313925656 Functional Gain - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3347500 chr1:3347499 nonsynonymous SNV 0.441 0 20 hm7G_associated_SNPs_20966 0 0 0 0 1 PRDM16 chr1:3347436 3'AG 3347436 Downstream 64bp 19506 chr14 74726376 74726376 1 + G T LUAD 74726377 + 74726357 74726397 41 GCCGGAGCAGTGTCATGGCGGAGTATGGGCTCTACGGGGCC GCCGGAGCAGTGTCATGGCTGAGTATGGGCTCTACGGGGCC < 41bp 0.629272360472531 0.880538672834386 NA NA prediction 0.502532624723709 Functional Gain - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74726377 chr14:74726376 synonymous SNV . 0 20 hm7G_associated_SNPs_20967 0 0 0 0 1 VSX2 chr14:74726305 3'AG 74726305 Downstream 72bp 19507 chr3 51718482 51718482 1 + G T BRCA 51718483 + 51718463 51718503 41 GCATCCTGAGTGAAGGTGAGGAATCGCCCTCCCCTGAGCTC GCATCCTGAGTGAAGGTGATGAATCGCCCTCCCCTGAGCTC < 41bp 0.418299684373717 0.751246454247514 NA NA prediction 0.502492908495028 Functional Gain - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51718483 chr3:51718482 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_20969 0 0 1 0 1 TEX264 chr3:51718429 3'AG 51718429 Downstream 54bp 19508 chr9 135102355 135102355 1 + G T LUAD 135102356 + 135102336 135102376 41 AAGAAGAATTTCCGCACCCGGTCCTGGCGGGCCGGCTCCTA AAGAAGAATTTCCGCACCCTGTCCTGGCGGGCCGGCTCCTA < 41bp 0.622735968317401 0.873980286073068 NA NA prediction 0.502488635511333 Functional Gain - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135102356 chr9:135102355 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_20970 0 0 0 0 1 NTNG2 chr9:135102408 5'GT 135102408 Upstream 54bp 19509 chr12 113447011 113447011 1 + G T GBM 113447012 + 113446992 113447032 41 TCTCCCTGCTTCAAGGATGGGACTGGAAACCCAATACCACC TCTCCCTGCTTCAAGGATGTGACTGGAAACCCAATACCACC < 41bp 0.451139795331017 0.751235651967515 NA NA prediction 0.502471303935029 Functional Gain - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113447012 chr12:113447011 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_20972 0 0 0 0 1 OAS2 chr12:113447045 5'GT 113447045 Upstream 35bp 19510 chr16 27772805 27772805 1 + G T LUAD 27772806 + 27772786 27772826 41 CACTGGCCTGGAAGTGGTGGGCAAGGAGGGCCAGGCGCTGC CACTGGCCTGGAAGTGGTGTGCAAGGAGGGCCAGGCGCTGC < 41bp 0.632835065357549 0.884046484827485 NA NA prediction 0.502422838939874 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27772806 chr16:27772805 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_20975 0 0 0 0 1 KIAA0556 chr16:27772734 3'AG 27772734 Downstream 72bp 19511 chr11 60265065 60265065 1 + G T LUSC 60265066 + 60265046 60265086 41 AGAAGAAGCAAAGGCACTAGGGGTAAGTCTATTTACTACCA AGAAGAAGCAAAGGCACTATGGGTAAGTCTATTTACTACCA < 41bp 0.441967049388045 0.751203121075376 NA NA prediction 0.502406242150751 Functional Gain - MS4A12 ENSG00000071203 CDS Human protein_coding chr11:60265066 chr11:60265065 nonsynonymous SNV 0.802 3 20 hm7G_associated_SNPs_20976 0 0 0 0 1 MS4A12 chr11:60265067 5'GT 60265067 Upstream 3bp 19512 chr10 1051785 1051785 1 + G T UCEC 1051786 + 1051766 1051806 41 TACAGATTTGCAGTCTGAAGGATTCCCTGTAATAGAGACCA TACAGATTTGCAGTCTGAATGATTCCCTGTAATAGAGACCA < 41bp 0.620691940762302 0.871894021392956 NA NA prediction 0.502404161261308 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1051786 chr10:1051785 stopgain 0.997 1 20 hm7G_associated_SNPs_20977 0 0 1 0 2 GTPBP4 chr10:1051758 3'AG 1051758 Downstream 28bp 19513 chr10 1051785 1051785 1 + G T UCEC 1051786 + 1051766 1051806 41 TACAGATTTGCAGTCTGAAGGATTCCCTGTAATAGAGACCA TACAGATTTGCAGTCTGAATGATTCCCTGTAATAGAGACCA < 41bp 0.620691940762302 0.871894021392956 NA NA prediction 0.502404161261308 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1051786 chr10:1051785 stopgain 0.997 1 20 hm7G_associated_SNPs_20977 0 0 1 0 2 GTPBP4 chr10:1051847 5'GT 1051847 Upstream 63bp 19514 chr7 57510009 57510009 1 + G T rs185976377 57510010 + 57509990 57510030 41 GATTTATGGCTAAAAGACCGGGACCCCCTGGAAGCCGAGAA GATTTATGGCTAAAAGACCTGGACCCCCTGGAAGCCGAGAA < 41bp 0.586170599560125 0.837368269028722 NA NA prediction 0.502395338937195 Functional Gain - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57510010 chr7:57510009 synonymous SNV . 0 20 hm7G_associated_SNPs_20978 0 0 0 0 1 ZNF716 chr7:57510033 5'GT 57510033 Upstream 25bp 19515 chr22 50925873 50925873 1 + G T STAD 50925874 + 50925854 50925894 41 CAGAGGTGGCCAAAGACAAGGCCAGCTTCCGGAACTACACG CAGAGGTGGCCAAAGACAATGCCAGCTTCCGGAACTACACG < 41bp 0.399570112387055 0.751183839522355 NA NA prediction 0.502367679044709 Functional Gain - MIOX ENSG00000100253 CDS Human protein_coding chr22:50925874 chr22:50925873 nonsynonymous SNV 0.911 1 20 hm7G_associated_SNPs_20979 0 0 0 0 2 MIOX chr22:50925814 3'AG 50925814 Downstream 60bp 19516 chr22 50925873 50925873 1 + G T STAD 50925874 + 50925854 50925894 41 CAGAGGTGGCCAAAGACAAGGCCAGCTTCCGGAACTACACG CAGAGGTGGCCAAAGACAATGCCAGCTTCCGGAACTACACG < 41bp 0.399570112387055 0.751183839522355 NA NA prediction 0.502367679044709 Functional Gain - MIOX ENSG00000100253 CDS Human protein_coding chr22:50925874 chr22:50925873 nonsynonymous SNV 0.911 1 20 hm7G_associated_SNPs_20979 0 0 0 0 2 MIOX chr22:50925894 5'GT 50925894 Upstream 22bp 19517 chr3 136646885 136646885 1 + G T STAD 136646886 + 136646866 136646906 41 TAGCCAAATTTGATTATGTGGCCCAACAAGAACAAGAGTTG TAGCCAAATTTGATTATGTTGCCCAACAAGAACAAGAGTTG < 41bp 0.613332363969988 0.864513761971322 NA NA prediction 0.502362796002669 Functional Gain - NCK1 ENSG00000158092 CDS Human protein_coding chr3:136646886 chr3:136646885 synonymous SNV . 0 20 hm7G_associated_SNPs_20980 0 0 1 0 1 NCK1 chr3:136646826 3'AG 136646826 Downstream 60bp 19518 chr6 110538977 110538977 1 + G T UCEC 110538978 + 110538958 110538998 41 CTCAGTGCAGCCTATGACAGGTATCTTAAGCTCTGGGACAC CTCAGTGCAGCCTATGACATGTATCTTAAGCTCTGGGACAC < 41bp 0.430428630885802 0.751174655156888 NA NA prediction 0.502349310313775 Functional Gain - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110538978 chr6:110538977 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20983 0 0 1 0 2 CDC40 chr6:110538905 3'AG 110538905 Downstream 73bp 19519 chr6 110538977 110538977 1 + G T UCEC 110538978 + 110538958 110538998 41 CTCAGTGCAGCCTATGACAGGTATCTTAAGCTCTGGGACAC CTCAGTGCAGCCTATGACATGTATCTTAAGCTCTGGGACAC < 41bp 0.430428630885802 0.751174655156888 NA NA prediction 0.502349310313775 Functional Gain - CDC40 ENSG00000168438 CDS Human protein_coding chr6:110538978 chr6:110538977 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_20983 0 0 1 0 2 CDC40 chr6:110539006 5'GT 110539006 Upstream 30bp 19520 chr11 55652996 55652996 1 + G T UCEC 55652997 + 55652977 55653017 41 CCAGTCACCATAGACTGTGGGCACAGCTTTTGCCGGCCCTG CCAGTCACCATAGACTGTGTGCACAGCTTTTGCCGGCCCTG < 41bp 0.613271828020896 0.864430301571402 NA NA prediction 0.502316947101012 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55652997 chr11:55652996 nonsynonymous SNV 0.165 3 20 hm7G_associated_SNPs_20984 0 0 0 0 1 TRIM51 chr11:55652901 3'AG 55652901 Downstream 96bp 19521 chr3 179288028 179288028 1 + G T LUAD 179288029 + 179288009 179288049 41 CACCTCTAAAAAATGGGATGGGTATGATGTTTTCCCCATGG CACCTCTAAAAAATGGGATTGGTATGATGTTTTCCCCATGG < 41bp 0.431994538216108 0.751152386882442 NA NA prediction 0.502304773764885 Functional Gain - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179288029 chr3:179288028 nonsynonymous SNV 0.881 4 20 hm7G_associated_SNPs_20986 0 0 1 0 1 ACTL6A chr3:179288029 5'GT 179288029 Upstream 2bp 19522 chr1 108994851 108994851 1 + G T COAD 108994852 + 108994832 108994872 41 ATCATAGACTCTGTGCTGAGGGATGAACTGCAGTCCATGGA ATCATAGACTCTGTGCTGATGGATGAACTGCAGTCCATGGA < 41bp 0.428082007570935 0.751144604208299 NA NA prediction 0.502289208416599 Functional Gain - NBPF6 ENSG00000186086 CDS Human protein_coding chr1:108994852 chr1:108994851 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_20988 0 0 0 0 1 NBPF6 chr1:108994911 5'GT 108994911 Upstream 61bp 19523 chr7 33014284 33014284 1 + G T LUAD 33014285 + 33014265 33014305 41 AAAAGGACAGCTGATCACAGGGATGGACCAGGCTCTTGTTG AAAAGGACAGCTGATCACATGGATGGACCAGGCTCTTGTTG < 41bp 0.410572363039326 0.751144000263421 NA NA prediction 0.502288000526843 Functional Gain - FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014285 chr7:33014284 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_20989 0 0 1 0 2 FKBP9 chr7:33014229 3'AG 33014229 Downstream 56bp 19524 chr7 33014284 33014284 1 + G T LUAD 33014285 + 33014265 33014305 41 AAAAGGACAGCTGATCACAGGGATGGACCAGGCTCTTGTTG AAAAGGACAGCTGATCACATGGATGGACCAGGCTCTTGTTG < 41bp 0.410572363039326 0.751144000263421 NA NA prediction 0.502288000526843 Functional Gain - FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33014285 chr7:33014284 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_20989 0 0 1 0 2 FKBP9 chr7:33014374 5'GT 33014374 Upstream 91bp 19525 chr12 121174801 121174801 1 + G T UCEC 121174802 + 121174782 121174822 41 TGCCCAGGTGAAGAAGATGGGCGGGCTTGGGCTTCTGGCCA TGCCCAGGTGAAGAAGATGTGCGGGCTTGGGCTTCTGGCCA < 41bp 0.622463373514745 0.873590771042089 NA NA prediction 0.502254795054689 Functional Gain - ACADS ENSG00000122971 CDS Human protein_coding chr12:121174802 chr12:121174801 nonsynonymous SNV 0.858 5 20 hm7G_associated_SNPs_20991 0 0 1 0 1 ACADS chr12:121174789 3'AG 121174789 Downstream 13bp 19526 chr19 30314606 30314606 1 + G T LUAD 30314607 + 30314587 30314627 41 TGTTGTCTGAACAAAATAGGGCTTCTCCTCTCCCCAGTGGG TGTTGTCTGAACAAAATAGTGCTTCTCCTCTCCCCAGTGGG < 41bp 0.615229668576776 0.86635127122687 NA NA prediction 0.502243205300188 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30314607 chr19:30314606 nonsynonymous SNV 0.917 0 20 hm7G_associated_SNPs_20993 0 0 1 0 1 CCNE1 chr19:30314562 3'AG 30314562 Downstream 45bp 19527 chr19 8486755 8486755 1 + G T PAAD 8486756 + 8486736 8486776 41 TGACTGCTGCCACCTCCCCGGCTCCCTGTGTGACTGCTCCG TGACTGCTGCCACCTCCCCTGCTCCCTGTGTGACTGCTCCG < 41bp 0.639757362499276 0.890871947468908 NA NA prediction 0.502229169939264 Functional Gain - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8486756 chr19:8486755 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_20996 0 0 0 0 1 MARCH2 chr19:8486673 3'AG 8486673 Downstream 83bp 19528 chr6 158357063 158357063 1 + G T LUSC 158357064 + 158357044 158357084 41 AAGAAATTGCCAGTCTCGTGGCAGAACAGGTACTAACATAA AAGAAATTGCCAGTCTCGTTGCAGAACAGGTACTAACATAA < 41bp 0.435986166980507 0.751101116633894 NA NA prediction 0.502202233267788 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158357064 chr6:158357063 synonymous SNV . 0 20 hm7G_associated_SNPs_20997 0 0 1 0 2 SNX9 chr6:158356996 3'AG 158356996 Downstream 68bp 19529 chr6 158357063 158357063 1 + G T LUSC 158357064 + 158357044 158357084 41 AAGAAATTGCCAGTCTCGTGGCAGAACAGGTACTAACATAA AAGAAATTGCCAGTCTCGTTGCAGAACAGGTACTAACATAA < 41bp 0.435986166980507 0.751101116633894 NA NA prediction 0.502202233267788 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158357064 chr6:158357063 synonymous SNV . 0 20 hm7G_associated_SNPs_20997 0 0 1 0 2 SNX9 chr6:158357072 5'GT 158357072 Upstream 10bp 19530 chr19 5667118 5667118 1 + G T TGCT 5667119 + 5667099 5667139 41 GACTCCCGCGATGGCTGGGGGGGCTATGGCTCTGACAAGAG GACTCCCGCGATGGCTGGGTGGGCTATGGCTCTGACAAGAG < 41bp 0.414547663951483 0.751076111655591 NA NA prediction 0.502152223311182 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667119 chr19:5667118 nonsynonymous SNV 0.892 2 20 hm7G_associated_SNPs_20999 0 0 1 0 2 SAFB chr19:5667057 3'AG 5667057 Downstream 62bp 19531 chr19 5667118 5667118 1 + G T TGCT 5667119 + 5667099 5667139 41 GACTCCCGCGATGGCTGGGGGGGCTATGGCTCTGACAAGAG GACTCCCGCGATGGCTGGGTGGGCTATGGCTCTGACAAGAG < 41bp 0.414547663951483 0.751076111655591 NA NA prediction 0.502152223311182 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667119 chr19:5667118 nonsynonymous SNV 0.892 2 20 hm7G_associated_SNPs_20999 0 0 1 0 2 SAFB chr19:5667175 5'GT 5667175 Upstream 58bp 19532 chr16 1838029 1838029 1 + G T LUAD 1838030 + 1838010 1838050 41 AATCGTGGAGAATATGAGCGGCTTCACCTGCCCACACTGCA AATCGTGGAGAATATGAGCTGCTTCACCTGCCCACACTGCA < 41bp 0.626814624859453 0.877888936367996 NA NA prediction 0.502148623017086 Functional Gain - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1838030 chr16:1838029 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_21000 0 0 1 0 2 NUBP2 chr16:1837942 3'AG 1837942 Downstream 88bp 19533 chr16 1838029 1838029 1 + G T LUAD 1838030 + 1838010 1838050 41 AATCGTGGAGAATATGAGCGGCTTCACCTGCCCACACTGCA AATCGTGGAGAATATGAGCTGCTTCACCTGCCCACACTGCA < 41bp 0.626814624859453 0.877888936367996 NA NA prediction 0.502148623017086 Functional Gain - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1838030 chr16:1838029 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_21000 0 0 1 0 2 NUBP2 chr16:1838052 5'GT 1838052 Upstream 24bp 19534 chr6 7402922 7402922 1 + G T SARC 7402923 + 7402903 7402943 41 TTTTGGTGTTCAAAGATCGGGATAAATATGTAAGTGGAGAA TTTTGGTGTTCAAAGATCGTGATAAATATGTAAGTGGAGAA < 41bp 0.608700469545216 0.859767660950285 NA NA prediction 0.502134382810137 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7402923 chr6:7402922 synonymous SNV . 0 20 hm7G_associated_SNPs_21001 0 0 0 0 2 RIOK1 chr6:7402836 3'AG 7402836 Downstream 87bp 19535 chr6 7402922 7402922 1 + G T SARC 7402923 + 7402903 7402943 41 TTTTGGTGTTCAAAGATCGGGATAAATATGTAAGTGGAGAA TTTTGGTGTTCAAAGATCGTGATAAATATGTAAGTGGAGAA < 41bp 0.608700469545216 0.859767660950285 NA NA prediction 0.502134382810137 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7402923 chr6:7402922 synonymous SNV . 0 20 hm7G_associated_SNPs_21001 0 0 0 0 2 RIOK1 chr6:7402948 5'GT 7402948 Upstream 27bp 19536 chr17 79204371 79204371 1 - C A LUSC 79204370 - 79204350 79204390 41 AGCTCAGCATGGGCAGCCCGGGACCTGTGACCAACAAGGCC AGCTCAGCATGGGCAGCCCTGGACCTGTGACCAACAAGGCC < 41bp 0.399716721016768 0.751065849683564 NA NA prediction 0.502131699367128 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79204370 chr17:79204371 synonymous SNV . 0 20 hm7G_associated_SNPs_21002 0 0 0 0 1 TEPSIN chr17:79204344 5'GT 79204344 Upstream 28bp 19537 chr1 168154083 168154083 1 + G T ESCA 168154084 + 168154064 168154104 41 CCTATACAACAGATTATAAGGGAACCTTACTTGGAGAATCT CCTATACAACAGATTATAATGGAACCTTACTTGGAGAATCT < 41bp 0.59904450995122 0.850041821048162 NA NA prediction 0.501994622193884 Functional Gain - TIPRL ENSG00000143155 CDS Human protein_coding chr1:168154084 chr1:168154083 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_21010 0 0 1 0 2 TIPRL chr1:168154017 3'AG 168154017 Downstream 67bp 19538 chr1 168154083 168154083 1 + G T ESCA 168154084 + 168154064 168154104 41 CCTATACAACAGATTATAAGGGAACCTTACTTGGAGAATCT CCTATACAACAGATTATAATGGAACCTTACTTGGAGAATCT < 41bp 0.59904450995122 0.850041821048162 NA NA prediction 0.501994622193884 Functional Gain - TIPRL ENSG00000143155 CDS Human protein_coding chr1:168154084 chr1:168154083 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_21010 0 0 1 0 2 TIPRL chr1:168154116 5'GT 168154116 Upstream 34bp 19539 chr2 24974998 24974998 1 + G T LUSC 24974999 + 24974979 24975019 41 TCACCAGACATGAAGGCCTGGCAGCAAGGAGCGATAGGAAA TCACCAGACATGAAGGCCTTGCAGCAAGGAGCGATAGGAAA < 41bp 0.622265462509204 0.873250884237865 NA NA prediction 0.50197084345732 Functional Gain - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24974999 chr2:24974998 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21014 0 0 0 0 1 NCOA1 chr2:24975025 5'GT 24975025 Upstream 28bp 19540 chr6 158363843 158363843 1 + G T LUAD 158363844 + 158363824 158363864 41 TTGCAGAAAAGCTGAGGCAGGCCCTCAGCCGCTTTCCAGTG TTGCAGAAAAGCTGAGGCATGCCCTCAGCCGCTTTCCAGTG < 41bp 0.605008959746377 0.855986572586973 NA NA prediction 0.501955225681192 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158363844 chr6:158363843 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_21015 0 0 1 0 1 SNX9 chr6:158363823 3'AG 158363823 Downstream 21bp 19541 chr16 57247814 57247814 1 + G T LGG 57247815 + 57247795 57247835 41 TCTAGGTCCTGCAAGTATAGGTTTACTTAGCCCAGGAATAC TCTAGGTCCTGCAAGTATATGTTTACTTAGCCCAGGAATAC < 41bp 0.426557905245895 0.750957880527877 NA NA prediction 0.501915761055755 Functional Gain - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57247815 chr16:57247814 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21016 0 0 1 0 2 RSPRY1 chr16:57247800 3'AG 57247800 Downstream 15bp 19542 chr16 57247814 57247814 1 + G T LGG 57247815 + 57247795 57247835 41 TCTAGGTCCTGCAAGTATAGGTTTACTTAGCCCAGGAATAC TCTAGGTCCTGCAAGTATATGTTTACTTAGCCCAGGAATAC < 41bp 0.426557905245895 0.750957880527877 NA NA prediction 0.501915761055755 Functional Gain - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57247815 chr16:57247814 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21016 0 0 1 0 2 RSPRY1 chr16:57247858 5'GT 57247858 Upstream 45bp 19543 chr1 179033173 179033173 1 + G T SARC 179033174 + 179033154 179033194 41 CTTTGGCTTCCAGATGTGTGGCCTCTGCAGAAGCACCGTCA CTTTGGCTTCCAGATGTGTTGCCTCTGCAGAAGCACCGTCA < 41bp 0.629829341766374 0.880786377934585 NA NA prediction 0.501914072336423 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179033174 chr1:179033173 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21017 0 0 1 0 1 FAM20B chr1:179033233 5'GT 179033233 Upstream 61bp 19544 chrX 37515063 37515063 1 + G T LUAD 37515064 + 37515044 37515084 41 ACTATGGAACCGAATACTTGGGTAAGTGAAGGTGTTTGCAT ACTATGGAACCGAATACTTTGGTAAGTGAAGGTGTTTGCAT < 41bp 0.620473541665742 0.871420219255327 NA NA prediction 0.50189335517917 Functional Gain - LANCL3 ENSG00000147036 CDS Human protein_coding chrX:37515064 chrX:37515063 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_21018 0 0 0 0 1 LANCL3 chrX:37515064 5'GT 37515064 Upstream 2bp 19545 chrX 152818635 152818635 1 + G T LUAD 152818636 + 152818616 152818656 41 CTACCGGGACTTCTCTGCAGGCCAGGAGCCCGACTGGGACA CTACCGGGACTTCTCTGCATGCCAGGAGCCCGACTGGGACA < 41bp 0.403089942499841 0.750869946805322 NA NA prediction 0.501739893610645 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152818636 chrX:152818635 nonsynonymous SNV 0.026 2 20 hm7G_associated_SNPs_21023 0 0 0 0 1 ATP2B3 chrX:152818727 5'GT 152818727 Upstream 93bp 19546 chr5 156729888 156729888 1 + G T HNSC 156729889 + 156729869 156729909 41 TTCCTGGCCAACCACAACAGGATCACCCAGGTGAGGGCAGA TTCCTGGCCAACCACAACATGATCACCCAGGTGAGGGCAGA < 41bp 0.410362140460573 0.750861424560293 NA NA prediction 0.501722849120586 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156729889 chr5:156729888 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21026 0 0 1 0 2 CYFIP2 chr5:156729802 3'AG 156729802 Downstream 87bp 19547 chr5 156729888 156729888 1 + G T HNSC 156729889 + 156729869 156729909 41 TTCCTGGCCAACCACAACAGGATCACCCAGGTGAGGGCAGA TTCCTGGCCAACCACAACATGATCACCCAGGTGAGGGCAGA < 41bp 0.410362140460573 0.750861424560293 NA NA prediction 0.501722849120586 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156729889 chr5:156729888 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21026 0 0 1 0 2 CYFIP2 chr5:156729898 5'GT 156729898 Upstream 11bp 19548 chr9 27228230 27228230 1 + G T LIHC 27228231 + 27228211 27228251 41 CTAATGAGACAATGCTGGCGGGAGAAGCCTTATGAGAGGCC CTAATGAGACAATGCTGGCTGGAGAAGCCTTATGAGAGGCC < 41bp 0.613894351381298 0.864753839960293 NA NA prediction 0.501718977157989 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27228231 chr9:27228230 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21027 0 0 0 0 2 TEK chr9:27228204 3'AG 27228204 Downstream 27bp 19549 chr9 27228230 27228230 1 + G T LIHC 27228231 + 27228211 27228251 41 CTAATGAGACAATGCTGGCGGGAGAAGCCTTATGAGAGGCC CTAATGAGACAATGCTGGCTGGAGAAGCCTTATGAGAGGCC < 41bp 0.613894351381298 0.864753839960293 NA NA prediction 0.501718977157989 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27228231 chr9:27228230 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21027 0 0 0 0 2 TEK chr9:27228303 5'GT 27228303 Upstream 74bp 19550 chr19 54657452 54657452 1 + G T STAD 54657453 + 54657433 54657473 41 TCCACTGTTCCTCCCCCAGGGCACTAAGGCACAGTATCTGG TCCACTGTTCCTCCCCCAGTGCACTAAGGCACAGTATCTGG < 41bp 0.424724282229766 0.750845666243502 NA NA prediction 0.501691332487004 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54657453 chr19:54657452 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_21028 0 0 1 0 1 CNOT3 chr19:54657452 3'AG 54657452 Downstream 1bp 19551 chrX 70680555 70680555 1 + G T UCEC 70680556 + 70680536 70680576 41 AACAACCCCGCATGCTTCAGGAGAACACAAGGATGGACATG AACAACCCCGCATGCTTCATGAGAACACAAGGATGGACATG < 41bp 0.436234235720549 0.750836456254798 NA NA prediction 0.501672912509597 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70680556 chrX:70680555 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21031 0 0 1 0 2 TAF1 chrX:70680476 3'AG 70680476 Downstream 80bp 19552 chrX 70680555 70680555 1 + G T UCEC 70680556 + 70680536 70680576 41 AACAACCCCGCATGCTTCAGGAGAACACAAGGATGGACATG AACAACCCCGCATGCTTCATGAGAACACAAGGATGGACATG < 41bp 0.436234235720549 0.750836456254798 NA NA prediction 0.501672912509597 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70680556 chrX:70680555 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21031 0 0 1 0 2 TAF1 chrX:70680653 5'GT 70680653 Upstream 99bp 19553 chr5 110462497 110462497 1 + G T STAD 110462498 + 110462478 110462518 41 TAACAAATTTGTCATCCCAGGTGGAAGAAAACTGGACCCAT TAACAAATTTGTCATCCCATGTGGAAGAAAACTGGACCCAT < 41bp 0.568224298440022 0.819054546906376 NA NA prediction 0.501660496932708 Functional Gain - WDR36 ENSG00000134987 CDS Human protein_coding chr5:110462498 chr5:110462497 nonsynonymous SNV 0.976 1 20 hm7G_associated_SNPs_21033 0 0 1 0 1 WDR36 chr5:110462432 3'AG 110462432 Downstream 66bp 19554 chr19 17885888 17885888 1 + G T LUSC 17885889 + 17885869 17885909 41 TTCCTGGAGCCCGATTCAGGGGTGAGTGATGTGGGAGGGGT TTCCTGGAGCCCGATTCAGTGGTGAGTGATGTGGGAGGGGT < 41bp 0.62569612363547 0.876520683083434 NA NA prediction 0.501649118895927 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885889 chr19:17885888 nonsynonymous SNV 0.973 0 20 hm7G_associated_SNPs_21034 0 0 1 0 2 FCHO1 chr19:17885865 3'AG 17885865 Downstream 24bp 19555 chr19 17885888 17885888 1 + G T LUSC 17885889 + 17885869 17885909 41 TTCCTGGAGCCCGATTCAGGGGTGAGTGATGTGGGAGGGGT TTCCTGGAGCCCGATTCAGTGGTGAGTGATGTGGGAGGGGT < 41bp 0.62569612363547 0.876520683083434 NA NA prediction 0.501649118895927 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885889 chr19:17885888 nonsynonymous SNV 0.973 0 20 hm7G_associated_SNPs_21034 0 0 1 0 2 FCHO1 chr19:17885889 5'GT 17885889 Upstream 2bp 19556 chr3 97599971 97599971 1 + G T LUAD 97599972 + 97599952 97599992 41 GAAATGTGTGCTAGAAGAAGGGGAAAAGGTGTTAAATCGTG GAAATGTGTGCTAGAAGAATGGGAAAAGGTGTTAAATCGTG < 41bp 0.436301451885116 0.750819463941345 NA NA prediction 0.50163892788269 Functional Gain - CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97599972 chr3:97599971 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21035 0 0 0 0 2 CRYBG3 chr3:97599916 3'AG 97599916 Downstream 56bp 19557 chr3 97599971 97599971 1 + G T LUAD 97599972 + 97599952 97599992 41 GAAATGTGTGCTAGAAGAAGGGGAAAAGGTGTTAAATCGTG GAAATGTGTGCTAGAAGAATGGGAAAAGGTGTTAAATCGTG < 41bp 0.436301451885116 0.750819463941345 NA NA prediction 0.50163892788269 Functional Gain - CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97599972 chr3:97599971 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21035 0 0 0 0 2 CRYBG3 chr3:97600063 5'GT 97600063 Upstream 93bp 19558 chr12 56380871 56380871 1 + G T COAD 56380872 + 56380852 56380892 41 GGTATTACGTTTTGTCAAAGGGCAGTTCCATGAGTACCAGG GGTATTACGTTTTGTCAAATGGCAGTTCCATGAGTACCAGG < 41bp 0.41667072563316 0.750806693098348 NA NA prediction 0.501613386196697 Functional Gain - RAB5B ENSG00000111540 CDS Human protein_coding chr12:56380872 chr12:56380871 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21038 0 0 1 0 1 RAB5B chr12:56380907 5'GT 56380907 Upstream 37bp 19559 chr3 101572528 101572528 1 + G T LUSC 101572529 + 101572509 101572549 41 GCGCCTGTGAGGCCATGGTGGGGCACGAGATGGCCTCTGAC GCGCCTGTGAGGCCATGGTTGGGCACGAGATGGCCTCTGAC < 41bp 0.414822119509531 0.750785851728442 NA NA prediction 0.501571703456885 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101572529 chr3:101572528 synonymous SNV . 0 20 hm7G_associated_SNPs_21039 0 0 0 0 1 NFKBIZ chr3:101572445 3'AG 101572445 Downstream 84bp 19560 chr1 1268367 1268367 1 + G T LUAD 1268368 + 1268348 1268388 41 GCTGCGGTTCGACAGCAGCGGAAACGTGGACATGGAGTACG GCTGCGGTTCGACAGCAGCTGAAACGTGGACATGGAGTACG < 41bp 0.628283338368381 0.879058877961654 NA NA prediction 0.501551079186547 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1268368 chr1:1268367 stopgain 0.023 0 20 hm7G_associated_SNPs_21041 0 0 0 0 1 TAS1R3 chr1:1268301 3'AG 1268301 Downstream 67bp 19561 chr12 52312887 52312887 1 + G T GBM 52312888 + 52312868 52312908 41 CCACCATCCCTAACCGGCTGGCTGCAGACCCGGTGAGGCCT CCACCATCCCTAACCGGCTTGCTGCAGACCCGGTGAGGCCT < 41bp 0.62642242866611 0.877163031510433 NA NA prediction 0.501481205688646 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52312888 chr12:52312887 synonymous SNV . 0 20 hm7G_associated_SNPs_21044 0 0 0 0 1 ACVRL1 chr12:52312899 5'GT 52312899 Upstream 13bp 19562 chr2 103095375 103095375 1 + G T LUAD 103095376 + 103095356 103095396 41 GGTGGGGGCGCTGGTGGGCGGCATCATCTTCGGCACCGACC GGTGGGGGCGCTGGTGGGCTGCATCATCTTCGGCACCGACC < 41bp 0.629285467146313 0.880014994749348 NA NA prediction 0.501459055206072 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103095376 chr2:103095375 nonsynonymous SNV 0.743 1 20 hm7G_associated_SNPs_21046 0 0 0 0 1 SLC9A4 chr2:103095298 3'AG 103095298 Downstream 78bp 19563 chr18 33738840 33738840 1 + G T LGG 33738841 + 33738821 33738861 41 AGCCACTGTCCCTGCATTGGGATTATCAAATAAAGCTGTCT AGCCACTGTCCCTGCATTGTGATTATCAAATAAAGCTGTCT < 41bp 0.421006281643817 0.750723578375156 NA NA prediction 0.501447156750313 Functional Gain - ELP2 ENSG00000134759 CDS Human protein_coding chr18:33738841 chr18:33738840 stopgain 0.966 1 20 hm7G_associated_SNPs_21047 0 0 1 0 1 ELP2 chr18:33738798 3'AG 33738798 Downstream 43bp 19564 chr19 1496326 1496326 1 + G T TGCT 1496327 + 1496307 1496347 41 GGCTCCCAGGCCCTGGAACGGGGCTCTCATGCTGTATCAGC GGCTCCCAGGCCCTGGAACTGGGCTCTCATGCTGTATCAGC < 41bp 0.406829254956854 0.750715758859871 NA NA prediction 0.501431517719742 Functional Gain - REEP6 ENSG00000115255 CDS Human protein_coding chr19:1496327 chr19:1496326 nonsynonymous SNV 0.069 4 20 hm7G_associated_SNPs_21048 0 0 1 0 1 REEP6 chr19:1496284 3'AG 1496284 Downstream 43bp 19565 chr16 72142376 72142376 1 + G T LUSC 72142377 + 72142357 72142397 41 CGTCTCCTGCCCTAGGTCCGGGAGGTGCGAGCTCAACTCAA CGTCTCCTGCCCTAGGTCCTGGAGGTGCGAGCTCAACTCAA < 41bp 0.628120541887966 0.878834928486906 NA NA prediction 0.501428773197881 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72142377 chr16:72142376 nonsynonymous SNV 0.929 3 20 hm7G_associated_SNPs_21049 0 0 1 0 1 DHX38 chr16:72142372 3'AG 72142372 Downstream 5bp 19566 chr8 12878613 12878613 1 + G T LIHC 12878614 + 12878594 12878634 41 CAACTGATGATTTACGTTTGGGCAATGGAACAAAAGAACCG CAACTGATGATTTACGTTTTGGCAATGGAACAAAAGAACCG < 41bp 0.443465705247006 0.750713932731448 NA NA prediction 0.501427865462897 Functional Gain - KIAA1456 ENSG00000250305 CDS Human protein_coding chr8:12878614 chr8:12878613 nonsynonymous SNV 0.876 4 20 hm7G_associated_SNPs_21050 0 0 0 0 1 KIAA1456 chr8:12878517 3'AG 12878517 Downstream 97bp 19567 chr1 75608953 75608953 1 + G T LUAD 75608954 + 75608934 75608974 41 GAGAGGAGTTTGCTTTGGTGGAAGAGAAAGTCCTCTGCAGA GAGAGGAGTTTGCTTTGGTTGAAGAGAAAGTCCTCTGCAGA < 41bp 0.619063682908039 0.869762124840595 NA NA prediction 0.501396883865111 Functional Gain - LHX8 ENSG00000162624 CDS Human protein_coding chr1:75608954 chr1:75608953 synonymous SNV . 0 20 hm7G_associated_SNPs_21051 0 0 0 0 1 LHX8 chr1:75609023 5'GT 75609023 Upstream 71bp 19568 chr1 86900422 86900422 1 + G T LUAD 86900423 + 86900403 86900443 41 TGGATGTGTCCAGCAAGATGGCAGAGGTAACATTTTGAACG TGGATGTGTCCAGCAAGATTGCAGAGGTAACATTTTGAACG < 41bp 0.439333695298031 0.750695553347388 NA NA prediction 0.501391106694776 Functional Gain - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86900423 chr1:86900422 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21052 0 0 0 0 1 CLCA2 chr1:86900428 5'GT 86900428 Upstream 7bp 19569 chr4 169060730 169060730 1 + G T KIRC 169060731 + 169060711 169060751 41 TACCAGAGCATGTATGGCCGGGTAAGGCCACTTTATCTTGA TACCAGAGCATGTATGGCCTGGTAAGGCCACTTTATCTTGA < 41bp 0.592861094457155 0.843556487786816 NA NA prediction 0.501390786659321 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169060731 chr4:169060730 nonsynonymous SNV 0.075 1 20 hm7G_associated_SNPs_21053 0 0 0 0 2 ANXA10 chr4:169060637 3'AG 169060637 Downstream 94bp 19570 chr4 169060730 169060730 1 + G T KIRC 169060731 + 169060711 169060751 41 TACCAGAGCATGTATGGCCGGGTAAGGCCACTTTATCTTGA TACCAGAGCATGTATGGCCTGGTAAGGCCACTTTATCTTGA < 41bp 0.592861094457155 0.843556487786816 NA NA prediction 0.501390786659321 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169060731 chr4:169060730 nonsynonymous SNV 0.075 1 20 hm7G_associated_SNPs_21053 0 0 0 0 2 ANXA10 chr4:169060731 5'GT 169060731 Upstream 2bp 19571 chr11 64695831 64695831 1 + G T COAD 64695832 + 64695812 64695852 41 CTCAAGACCATCCTGCACCGGGTCTATGGCAAGTTCCTGGG CTCAAGACCATCCTGCACCTGGTCTATGGCAAGTTCCTGGG < 41bp 0.631685167250102 0.882370769341625 NA NA prediction 0.501371204183045 Functional Gain - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64695832 chr11:64695831 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21055 0 0 0 0 2 PPP2R5B chr11:64695767 3'AG 64695767 Downstream 65bp 19572 chr11 64695831 64695831 1 + G T COAD 64695832 + 64695812 64695852 41 CTCAAGACCATCCTGCACCGGGTCTATGGCAAGTTCCTGGG CTCAAGACCATCCTGCACCTGGTCTATGGCAAGTTCCTGGG < 41bp 0.631685167250102 0.882370769341625 NA NA prediction 0.501371204183045 Functional Gain - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64695832 chr11:64695831 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21055 0 0 0 0 2 PPP2R5B chr11:64695897 5'GT 64695897 Upstream 67bp 19573 chr16 28883101 28883101 1 + G T LUSC 28883102 + 28883082 28883122 41 TTGCCCTTTTTTTTTCCAGGGGCATATGGGGGCCTCTCAGA TTGCCCTTTTTTTTTCCAGTGGCATATGGGGGCCTCTCAGA < 41bp 0.407174340377022 0.750683741716805 NA NA prediction 0.501367483433609 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28883102 chr16:28883101 nonsynonymous SNV 0.283 3 20 hm7G_associated_SNPs_21056 0 0 0 0 1 SH2B1 chr16:28883101 3'AG 28883101 Downstream 1bp 19574 chr1 3396428 3396428 1 + G T UCEC 3396429 + 3396409 3396449 41 TCGCGAAGCAAGCAGACGAGGTCACACTGCAGCAGGCGGAC TCGCGAAGCAAGCAGACGATGTCACACTGCAGCAGGCGGAC < 41bp 0.414643832675446 0.750660430554012 NA NA prediction 0.501320861108024 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3396429 chr1:3396428 nonsynonymous SNV 0.184 4 20 hm7G_associated_SNPs_21058 0 0 1 0 2 ARHGEF16 chr1:3396376 3'AG 3396376 Downstream 53bp 19575 chr1 3396428 3396428 1 + G T UCEC 3396429 + 3396409 3396449 41 TCGCGAAGCAAGCAGACGAGGTCACACTGCAGCAGGCGGAC TCGCGAAGCAAGCAGACGATGTCACACTGCAGCAGGCGGAC < 41bp 0.414643832675446 0.750660430554012 NA NA prediction 0.501320861108024 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3396429 chr1:3396428 nonsynonymous SNV 0.184 4 20 hm7G_associated_SNPs_21058 0 0 1 0 2 ARHGEF16 chr1:3396477 5'GT 3396477 Upstream 50bp 19576 chr14 21571348 21571348 1 + G T COAD 21571349 + 21571329 21571369 41 TGGAGAATGGTCCCACGGTGGCCAGCACAGGAGCAAATGAG TGGAGAATGGTCCCACGGTTGCCAGCACAGGAGCAAATGAG < 41bp 0.606874871471762 0.857491101771055 NA NA prediction 0.501232460598587 Functional Gain - TMEM253 ENSG00000232070 CDS Human protein_coding chr14:21571349 chr14:21571348 synonymous SNV . 0 20 hm7G_associated_SNPs_21062 0 0 0 0 1 TMEM253 chr14:21571298 3'AG 21571298 Downstream 51bp 19577 chr13 113770072 113770072 1 + G T HNSC 113770073 + 113770053 113770093 41 CTCCTGTCGGTGCCACGAGGGGTACTCTCTGCTGGCAGACG CTCCTGTCGGTGCCACGAGTGGTACTCTCTGCTGGCAGACG < 41bp 0.401925000874357 0.750607212118088 NA NA prediction 0.501214424236176 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113770073 chr13:113770072 nonsynonymous SNV 0.154 5 20 hm7G_associated_SNPs_21063 0 0 1 0 2 F7 chr13:113769974 3'AG 113769974 Downstream 99bp 19578 chr13 113770072 113770072 1 + G T HNSC 113770073 + 113770053 113770093 41 CTCCTGTCGGTGCCACGAGGGGTACTCTCTGCTGGCAGACG CTCCTGTCGGTGCCACGAGTGGTACTCTCTGCTGGCAGACG < 41bp 0.401925000874357 0.750607212118088 NA NA prediction 0.501214424236176 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113770073 chr13:113770072 nonsynonymous SNV 0.154 5 20 hm7G_associated_SNPs_21063 0 0 1 0 2 F7 chr13:113770114 5'GT 113770114 Upstream 43bp 19579 chr5 134007564 134007564 1 + G T LUAD 134007565 + 134007545 134007585 41 TTACGACGAGATTGAAGGAGGTGGCTTATTGGGTGAGATGC TTACGACGAGATTGAAGGATGTGGCTTATTGGGTGAGATGC < 41bp 0.441301323612001 0.750597697509559 NA NA prediction 0.501195395019117 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134007565 chr5:134007564 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21064 0 0 1 0 2 SEC24A chr5:134007499 3'AG 134007499 Downstream 66bp 19580 chr5 134007564 134007564 1 + G T LUAD 134007565 + 134007545 134007585 41 TTACGACGAGATTGAAGGAGGTGGCTTATTGGGTGAGATGC TTACGACGAGATTGAAGGATGTGGCTTATTGGGTGAGATGC < 41bp 0.441301323612001 0.750597697509559 NA NA prediction 0.501195395019117 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134007565 chr5:134007564 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21064 0 0 1 0 2 SEC24A chr5:134007576 5'GT 134007576 Upstream 13bp 19581 chr11 93806234 93806234 1 + G T UCEC 93806235 + 93806215 93806255 41 AGGGGACAACAGAATAGGAGGAAAATACTGGAAGGTTCGGT AGGGGACAACAGAATAGGATGAAAATACTGGAAGGTTCGGT < 41bp 0.619902910248351 0.870491204621532 NA NA prediction 0.501176588746362 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93806235 chr11:93806234 stopgain 1.000 1 20 hm7G_associated_SNPs_21065 0 0 0 0 2 HEPHL1 chr11:93806191 3'AG 93806191 Downstream 44bp 19582 chr11 93806234 93806234 1 + G T UCEC 93806235 + 93806215 93806255 41 AGGGGACAACAGAATAGGAGGAAAATACTGGAAGGTTCGGT AGGGGACAACAGAATAGGATGAAAATACTGGAAGGTTCGGT < 41bp 0.619902910248351 0.870491204621532 NA NA prediction 0.501176588746362 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93806235 chr11:93806234 stopgain 1.000 1 20 hm7G_associated_SNPs_21065 0 0 0 0 2 HEPHL1 chr11:93806330 5'GT 93806330 Upstream 97bp 19583 chr19 49632647 49632647 1 + G T CESC 49632648 + 49632628 49632668 41 GATCCCCAGGTCCGGGAGCGGCTGCGGATGGCGCTGGAGCG GATCCCCAGGTCCGGGAGCTGCTGCGGATGGCGCTGGAGCG < 41bp 0.625820119296082 0.876386897537342 NA NA prediction 0.50113355648252 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49632648 chr19:49632647 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_21066 0 0 1 0 2 PPFIA3 chr19:49632637 3'AG 49632637 Downstream 11bp 19584 chr19 49632647 49632647 1 + G T CESC 49632648 + 49632628 49632668 41 GATCCCCAGGTCCGGGAGCGGCTGCGGATGGCGCTGGAGCG GATCCCCAGGTCCGGGAGCTGCTGCGGATGGCGCTGGAGCG < 41bp 0.625820119296082 0.876386897537342 NA NA prediction 0.50113355648252 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49632648 chr19:49632647 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_21066 0 0 1 0 2 PPFIA3 chr19:49632711 5'GT 49632711 Upstream 65bp 19585 chr1 158151905 158151905 1 + G T LUAD 158151906 + 158151886 158151926 41 CTTCCATGTAGCATTTCAAGGAAAAGATATCCTGAGTTTCC CTTCCATGTAGCATTTCAATGAAAAGATATCCTGAGTTTCC < 41bp 0.418068039568479 0.750535098212273 NA NA prediction 0.501070196424547 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151906 chr1:158151905 stopgain 0.009 1 20 hm7G_associated_SNPs_21069 0 0 0 0 1 CD1D chr1:158151822 3'AG 158151822 Downstream 84bp 19586 chr18 2913153 2913153 1 + G T STAD 2913154 + 2913134 2913174 41 ACGTGGAAGCAGTGCTGTCGGTCTCCAACGCCAGCGTGGCC ACGTGGAAGCAGTGCTGTCTGTCTCCAACGCCAGCGTGGCC < 41bp 0.608120900985173 0.858648901990942 NA NA prediction 0.501056002011537 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2913154 chr18:2913153 synonymous SNV . 0 20 hm7G_associated_SNPs_21070 0 0 0 0 1 EMILIN2 chr18:2913065 3'AG 2913065 Downstream 89bp 19587 chrX 36162701 36162701 1 + G T HNSC 36162702 + 36162682 36162722 41 GTCTGAGGGTGTTTCCAAAGGAGATGGATGCAGGAGTCAGT GTCTGAGGGTGTTTCCAAATGAGATGGATGCAGGAGTCAGT < 41bp 0.590707362583931 0.841229405391149 NA NA prediction 0.501044085614436 Functional Gain - CFAP47 ENSG00000176034 CDS Human other chrX:36162702 chrX:36162701 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_21071 0 0 0 0 1 CFAP47 chrX:36162678 3'AG 36162678 Downstream 24bp 19588 chr3 51663418 51663418 1 + G T THYM 51663419 + 51663399 51663439 41 CAAGAAGAGTTGGAAAGAAGGAAGCGCCTGGAGCAGCAGAG CAAGAAGAGTTGGAAAGAATGAAGCGCCTGGAGCAGCAGAG < 41bp 0.615151471677388 0.865664111881069 NA NA prediction 0.501025280407361 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51663419 chr3:51663418 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21072 0 0 1 0 1 RAD54L2 chr3:51663489 5'GT 51663489 Upstream 72bp 19589 chr9 35398939 35398939 1 + G T UCEC 35398940 + 35398920 35398960 41 ACATCCTGGGCCAGGTTCGGGGCACAGGGAATGCATCTCCA ACATCCTGGGCCAGGTTCGTGGCACAGGGAATGCATCTCCA < 41bp 0.409563562180615 0.750506970648971 NA NA prediction 0.501013941297942 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35398940 chr9:35398939 synonymous SNV . 0 20 hm7G_associated_SNPs_21074 0 0 0 0 2 UNC13B chr9:35398879 3'AG 35398879 Downstream 61bp 19590 chr9 35398939 35398939 1 + G T UCEC 35398940 + 35398920 35398960 41 ACATCCTGGGCCAGGTTCGGGGCACAGGGAATGCATCTCCA ACATCCTGGGCCAGGTTCGTGGCACAGGGAATGCATCTCCA < 41bp 0.409563562180615 0.750506970648971 NA NA prediction 0.501013941297942 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35398940 chr9:35398939 synonymous SNV . 0 20 hm7G_associated_SNPs_21074 0 0 0 0 2 UNC13B chr9:35399031 5'GT 35399031 Upstream 93bp 19591 chr2 79255402 79255402 1 + G T COAD 79255403 + 79255383 79255423 41 TCTGCAAGTTCAAGGACTAGGGCAGGTGGGAAGTCAGCAGC TCTGCAAGTTCAAGGACTATGGCAGGTGGGAAGTCAGCAGC < 41bp 0.587622160718589 0.838121640108214 NA NA prediction 0.50099895877925 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255403 chr2:79255402 stoploss 0.664 0 20 hm7G_associated_SNPs_21075 0 0 0 0 1 REG3G chr2:79255335 3'AG 79255335 Downstream 68bp 19592 chr17 42228349 42228349 1 + G T COAD 42228350 + 42228330 42228370 41 AGAGTGGGAGAAGTCTGGAGGACATCATGGTTTCCGCGCCC AGAGTGGGAGAAGTCTGGATGACATCATGGTTTCCGCGCCC < 41bp 0.415101927745875 0.750484913607698 NA NA prediction 0.500969827215396 Functional Gain - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42228350 chr17:42228349 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_21077 0 0 0 0 2 C17orf53 chr17:42228329 3'AG 42228329 Downstream 21bp 19593 chr17 42228349 42228349 1 + G T COAD 42228350 + 42228330 42228370 41 AGAGTGGGAGAAGTCTGGAGGACATCATGGTTTCCGCGCCC AGAGTGGGAGAAGTCTGGATGACATCATGGTTTCCGCGCCC < 41bp 0.415101927745875 0.750484913607698 NA NA prediction 0.500969827215396 Functional Gain - C17orf53 ENSG00000125319 CDS Human protein_coding chr17:42228350 chr17:42228349 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_21077 0 0 0 0 2 C17orf53 chr17:42228412 5'GT 42228412 Upstream 64bp 19594 chr5 112849703 112849703 1 + G T UCEC 112849704 + 112849684 112849724 41 GCCGGGCCAAGGGGCTGAAGGACATTCGCATTGATGAGGAG GCCGGGCCAAGGGGCTGAATGACATTCGCATTGATGAGGAG < 41bp 0.420416256520402 0.750483168938397 NA NA prediction 0.500966337876795 Functional Gain - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112849704 chr5:112849703 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_21079 0 0 1 0 1 YTHDC2 chr5:112849779 5'GT 112849779 Upstream 77bp 19595 chr7 86813798 86813798 1 + G T UCEC 86813799 + 86813779 86813819 41 CAGGTGACATAGTCACACAGGGTGTGTCTTGGGCAGCTGTG CAGGTGACATAGTCACACATGGTGTGTCTTGGGCAGCTGTG < 41bp 0.628270214013016 0.878749316547896 NA NA prediction 0.500958205069758 Functional Gain - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86813799 chr7:86813798 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21080 0 0 1 0 1 DMTF1 chr7:86813713 3'AG 86813713 Downstream 86bp 19596 chr19 56499243 56499243 1 + G T LUSC 56499244 + 56499224 56499264 41 CTCACCCACCCGACTTCACGGGAAAAAGTGACTGCCTATCC CTCACCCACCCGACTTCACTGGAAAAAGTGACTGCCTATCC < 41bp 0.44228661949409 0.750456244888471 NA NA prediction 0.500912489776942 Functional Gain - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56499244 chr19:56499243 synonymous SNV . 0 20 hm7G_associated_SNPs_21082 0 0 0 0 1 NLRP8 chr19:56499180 3'AG 56499180 Downstream 64bp 19597 chr6 43415131 43415131 1 + G T THYM 43415132 + 43415112 43415152 41 ACCTGCCCCAGGAACCCCAGGGCCAGCCACTGCAGGTGGGC ACCTGCCCCAGGAACCCCATGGCCAGCCACTGCAGGTGGGC < 41bp 0.392927503693028 0.750427002623345 NA NA prediction 0.500854005246691 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43415132 chr6:43415131 nonsynonymous SNV 0.744 1 20 hm7G_associated_SNPs_21085 0 0 1 0 1 ABCC10 chr6:43415146 5'GT 43415146 Upstream 16bp 19598 chr6 71464697 71464697 1 + G T BLCA 71464698 + 71464678 71464718 41 TATAGTGCATGCAAGATATGGGAAATACTAAAGCAAGACTA TATAGTGCATGCAAGATATTGGAAATACTAAAGCAAGACTA < 41bp 0.43196404398666 0.750419689519007 NA NA prediction 0.500839379038015 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71464698 chr6:71464697 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21087 0 0 1 1 2 SMAP1 chr6:71464683 3'AG 71464683 Downstream 15bp 19599 chr6 71464697 71464697 1 + G T BLCA 71464698 + 71464678 71464718 41 TATAGTGCATGCAAGATATGGGAAATACTAAAGCAAGACTA TATAGTGCATGCAAGATATTGGAAATACTAAAGCAAGACTA < 41bp 0.43196404398666 0.750419689519007 NA NA prediction 0.500839379038015 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71464698 chr6:71464697 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21087 0 0 1 1 2 SMAP1 chr6:71464768 5'GT 71464768 Upstream 72bp 19600 chr19 7743450 7743450 1 + G T LUSC 7743451 + 7743431 7743471 41 TTCAGCAGAGCATCACCATGGTCAGGAGCAAGATTGATAGA TTCAGCAGAGCATCACCATTGTCAGGAGCAAGATTGATAGA < 41bp 0.430328459267186 0.750377398487105 NA NA prediction 0.50075479697421 Functional Gain - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human protein_coding chr19:7743451 chr19:7743450 nonsynonymous SNV 0.024 0 20 hm7G_associated_SNPs_21088 0 0 0 0 2 MCEMP1 chr19:7743377 3'AG 7743377 Downstream 74bp 19601 chr19 7743450 7743450 1 + G T LUSC 7743451 + 7743431 7743471 41 TTCAGCAGAGCATCACCATGGTCAGGAGCAAGATTGATAGA TTCAGCAGAGCATCACCATTGTCAGGAGCAAGATTGATAGA < 41bp 0.430328459267186 0.750377398487105 NA NA prediction 0.50075479697421 Functional Gain - MCEMP1 ENSG00000183019;ENSG00000269711 CDS Human other chr19:7743451 chr19:7743450 nonsynonymous SNV 0.024 0 20 hm7G_associated_SNPs_21088 0 0 0 0 2 MCEMP1 chr19:7743490 5'GT 7743490 Upstream 41bp 19602 chr10 103987432 103987432 1 + G T STAD 103987433 + 103987413 103987453 41 CCTGGTTCTCATCGCTGTGGGGCAGAACTACATGAAGGAAC CCTGGTTCTCATCGCTGTGTGGCAGAACTACATGAAGGAAC < 41bp 0.628791112571598 0.879155532646615 NA NA prediction 0.500728840150033 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103987433 chr10:103987432 nonsynonymous SNV 0.213 4 20 hm7G_associated_SNPs_21090 0 0 0 0 2 ELOVL3 chr10:103987383 3'AG 103987383 Downstream 50bp 19603 chr10 103987432 103987432 1 + G T STAD 103987433 + 103987413 103987453 41 CCTGGTTCTCATCGCTGTGGGGCAGAACTACATGAAGGAAC CCTGGTTCTCATCGCTGTGTGGCAGAACTACATGAAGGAAC < 41bp 0.628791112571598 0.879155532646615 NA NA prediction 0.500728840150033 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103987433 chr10:103987432 nonsynonymous SNV 0.213 4 20 hm7G_associated_SNPs_21090 0 0 0 0 2 ELOVL3 chr10:103987514 5'GT 103987514 Upstream 83bp 19604 chr3 51669792 51669792 1 + G T UCEC 51669793 + 51669773 51669813 41 ATGAGGAAGATCGGCAGCAGGAGTTTCGGAGAGGTGGGCAG ATGAGGAAGATCGGCAGCATGAGTTTCGGAGAGGTGGGCAG < 41bp 0.428720543200222 0.750361395134291 NA NA prediction 0.500722790268582 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51669793 chr3:51669792 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21091 0 0 1 0 1 RAD54L2 chr3:51669805 5'GT 51669805 Upstream 14bp 19605 chr12 120750703 120750703 1 + G T UCEC 120750704 + 120750684 120750724 41 CAGGTATACTCTGGTTACAGGTTTATCCTCACTGCCTGGGA CAGGTATACTCTGGTTACATGTTTATCCTCACTGCCTGGGA < 41bp 0.597747495914887 0.848106973491 NA NA prediction 0.500718955152225 Functional Gain - SIRT4 ENSG00000089163 CDS Human protein_coding chr12:120750704 chr12:120750703 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21092 0 0 0 0 1 SIRT4 chr12:120750687 3'AG 120750687 Downstream 17bp 19606 chr14 95034546 95034546 1 + G T LUAD 95034547 + 95034527 95034567 41 TTAGATCAGATTTTGCCCAGGCTGGGCTTCACGGATCTGTT TTAGATCAGATTTTGCCCATGCTGGGCTTCACGGATCTGTT < 41bp 0.619455254753023 0.869781352724331 NA NA prediction 0.500652195942618 Functional Gain - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95034547 chr14:95034546 nonsynonymous SNV 0.074 2 20 hm7G_associated_SNPs_21096 0 0 1 0 2 SERPINA4 chr14:95034466 3'AG 95034466 Downstream 81bp 19607 chr14 95034546 95034546 1 + G T LUAD 95034547 + 95034527 95034567 41 TTAGATCAGATTTTGCCCAGGCTGGGCTTCACGGATCTGTT TTAGATCAGATTTTGCCCATGCTGGGCTTCACGGATCTGTT < 41bp 0.619455254753023 0.869781352724331 NA NA prediction 0.500652195942618 Functional Gain - SERPINA4 ENSG00000100665 CDS Human protein_coding chr14:95034547 chr14:95034546 nonsynonymous SNV 0.074 2 20 hm7G_associated_SNPs_21096 0 0 1 0 2 SERPINA4 chr14:95034625 5'GT 95034625 Upstream 80bp 19608 chr17 21205520 21205520 1 + G T UCEC 21205521 + 21205501 21205541 41 AGTTCTACCGGAAGGTGCTGGATAAAAACATGACAATTCCA AGTTCTACCGGAAGGTGCTTGATAAAAACATGACAATTCCA < 41bp 0.631918354370934 0.882222303603468 NA NA prediction 0.500607898465068 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205521 chr17:21205520 synonymous SNV . 0 20 hm7G_associated_SNPs_21097 0 0 1 0 2 MAP2K3 chr17:21205455 3'AG 21205455 Downstream 66bp 19609 chr17 21205520 21205520 1 + G T UCEC 21205521 + 21205501 21205541 41 AGTTCTACCGGAAGGTGCTGGATAAAAACATGACAATTCCA AGTTCTACCGGAAGGTGCTTGATAAAAACATGACAATTCCA < 41bp 0.631918354370934 0.882222303603468 NA NA prediction 0.500607898465068 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21205521 chr17:21205520 synonymous SNV . 0 20 hm7G_associated_SNPs_21097 0 0 1 0 2 MAP2K3 chr17:21205571 5'GT 21205571 Upstream 52bp 19610 chr10 91098507 91098507 1 + G T COAD 91098508 + 91098488 91098528 41 AAGGAAGACAGTGTCTCAAGGGATCTAGAAGATAGAGTGTG AAGGAAGACAGTGTCTCAATGGATCTAGAAGATAGAGTGTG < 41bp 0.597955756811208 0.848245838982623 NA NA prediction 0.500580164342828 Functional Gain - IFIT3 ENSG00000119917 CDS Human protein_coding chr10:91098508 chr10:91098507 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_21098 0 0 0 0 1 IFIT3 chr10:91098418 3'AG 91098418 Downstream 90bp 19611 chr10 5494850 5494850 1 + G T UCEC 5494851 + 5494831 5494871 41 AAATGTCCCGAGGTGAACAGGATTTAATTGAGGATCTCAAA AAATGTCCCGAGGTGAACATGATTTAATTGAGGATCTCAAA < 41bp 0.618126551822031 0.868380763561225 NA NA prediction 0.500508423478387 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494851 chr10:5494850 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_21100 0 0 1 0 3 NET1 chr10:5494788 3'AG 5494788 Downstream 63bp 19612 chr10 5494850 5494850 1 + G T UCEC 5494851 + 5494831 5494871 41 AAATGTCCCGAGGTGAACAGGATTTAATTGAGGATCTCAAA AAATGTCCCGAGGTGAACATGATTTAATTGAGGATCTCAAA < 41bp 0.618126551822031 0.868380763561225 NA NA prediction 0.500508423478387 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494851 chr10:5494850 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_21100 0 0 1 0 3 NET1 chr10:5494821 3'AG 5494821 Downstream 30bp 19613 chr10 5494850 5494850 1 + G T UCEC 5494851 + 5494831 5494871 41 AAATGTCCCGAGGTGAACAGGATTTAATTGAGGATCTCAAA AAATGTCCCGAGGTGAACATGATTTAATTGAGGATCTCAAA < 41bp 0.618126551822031 0.868380763561225 NA NA prediction 0.500508423478387 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494851 chr10:5494850 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_21100 0 0 1 0 3 NET1 chr10:5494883 5'GT 5494883 Upstream 34bp 19614 chr19 15164639 15164639 1 + G T LUSC 15164640 + 15164620 15164660 41 TACTCATGGCTCACGGGAGGGAAGGCTTCCTCAAGGGAGAA TACTCATGGCTCACGGGAGTGAAGGCTTCCTCAAGGGAGAA < 41bp 0.626586335395716 0.876834470443669 NA NA prediction 0.500496270095907 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164640 chr19:15164639 nonsynonymous SNV 0.277 0 20 hm7G_associated_SNPs_21102 0 0 0 0 1 CASP14 chr19:15164544 3'AG 15164544 Downstream 96bp 19615 chr16 31422694 31422694 1 + G T OV 31422695 + 31422675 31422715 41 ACCCCTGGGGCCGCTTTGGGGCAGCCCTGACAGTGTTGGGG ACCCCTGGGGCCGCTTTGGTGCAGCCCTGACAGTGTTGGGG < 41bp 0.397232542057357 0.750243669521914 NA NA prediction 0.500487339043828 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422695 chr16:31422694 synonymous SNV . 0 20 hm7G_associated_SNPs_21104 0 0 0 0 2 ITGAD chr16:31422626 3'AG 31422626 Downstream 69bp 19616 chr16 31422694 31422694 1 + G T OV 31422695 + 31422675 31422715 41 ACCCCTGGGGCCGCTTTGGGGCAGCCCTGACAGTGTTGGGG ACCCCTGGGGCCGCTTTGGTGCAGCCCTGACAGTGTTGGGG < 41bp 0.397232542057357 0.750243669521914 NA NA prediction 0.500487339043828 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422695 chr16:31422694 synonymous SNV . 0 20 hm7G_associated_SNPs_21104 0 0 0 0 2 ITGAD chr16:31422629 3'AG 31422629 Downstream 66bp 19617 chr6 126317171 126317171 1 + G T OV 126317172 + 126317152 126317192 41 GCAAGAAATTTGATGAAACGGACAGTGTGTGCCAAGTAAGA GCAAGAAATTTGATGAAACTGACAGTGTGTGCCAAGTAAGA < 41bp 0.435852275108072 0.750226960285738 NA NA prediction 0.500453920571477 Functional Gain - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126317172 chr6:126317171 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21107 0 0 1 3 2 TRMT11 chr6:126317113 3'AG 126317113 Downstream 59bp 19618 chr6 126317171 126317171 1 + G T OV 126317172 + 126317152 126317192 41 GCAAGAAATTTGATGAAACGGACAGTGTGTGCCAAGTAAGA GCAAGAAATTTGATGAAACTGACAGTGTGTGCCAAGTAAGA < 41bp 0.435852275108072 0.750226960285738 NA NA prediction 0.500453920571477 Functional Gain - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126317172 chr6:126317171 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21107 0 0 1 3 2 TRMT11 chr6:126317186 5'GT 126317186 Upstream 16bp 19619 chr19 36272148 36272148 1 + G T UCEC 36272149 + 36272129 36272169 41 GTGTCTTCCAACATCCAGAGGCTTCGGTGAGGGCCCTTAGC GTGTCTTCCAACATCCAGATGCTTCGGTGAGGGCCCTTAGC < 41bp 0.632766936168082 0.882979067627147 NA NA prediction 0.500424262918129 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36272149 chr19:36272148 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_21109 0 0 1 0 2 ARHGAP33 chr19:36272052 3'AG 36272052 Downstream 97bp 19620 chr19 36272148 36272148 1 + G T UCEC 36272149 + 36272129 36272169 41 GTGTCTTCCAACATCCAGAGGCTTCGGTGAGGGCCCTTAGC GTGTCTTCCAACATCCAGATGCTTCGGTGAGGGCCCTTAGC < 41bp 0.632766936168082 0.882979067627147 NA NA prediction 0.500424262918129 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36272149 chr19:36272148 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_21109 0 0 1 0 2 ARHGAP33 chr19:36272154 5'GT 36272154 Upstream 7bp 19621 chr13 78173503 78173503 1 + G T UCS 78173504 + 78173484 78173524 41 TCTTCAGAGCAAATCCAAAGGTAGAAGAAAGAGAGAAAAGG TCTTCAGAGCAAATCCAAATGTAGAAGAAAGAGAGAAAAGG < 41bp 0.594230043168596 0.844434384360489 NA NA prediction 0.500408682383787 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78173504 chr13:78173503 nonsynonymous SNV 0.073 2 20 hm7G_associated_SNPs_21110 0 0 0 0 2 SCEL chr13:78173464 3'AG 78173464 Downstream 40bp 19622 chr13 78173503 78173503 1 + G T UCS 78173504 + 78173484 78173524 41 TCTTCAGAGCAAATCCAAAGGTAGAAGAAAGAGAGAAAAGG TCTTCAGAGCAAATCCAAATGTAGAAGAAAGAGAGAAAAGG < 41bp 0.594230043168596 0.844434384360489 NA NA prediction 0.500408682383787 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78173504 chr13:78173503 nonsynonymous SNV 0.073 2 20 hm7G_associated_SNPs_21110 0 0 0 0 2 SCEL chr13:78173523 5'GT 78173523 Upstream 21bp 19623 chr7 143039486 143039486 1 + G T UCEC 143039487 + 143039467 143039507 41 AATATACCATCTTTGTTGAGGACATCATGGTACGTGATGTG AATATACCATCTTTGTTGATGACATCATGGTACGTGATGTG < 41bp 0.420155686699248 0.750196747058954 NA NA prediction 0.500393494117908 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143039487 chr7:143039486 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21111 0 0 0 0 1 CLCN1 chr7:143039465 3'AG 143039465 Downstream 22bp 19624 chr16 11002916 11002916 1 + G T UCEC 11002917 + 11002897 11002937 41 GCGACACGGTGGCGCTGTGGGAGTCCCTGCAGCAGCATGGG GCGACACGGTGGCGCTGTGTGAGTCCCTGCAGCAGCATGGG < 41bp 0.402879103872189 0.75018580068014 NA NA prediction 0.500371601360279 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11002917 chr16:11002916 nonsynonymous SNV 0.603 4 20 hm7G_associated_SNPs_21112 0 0 0 0 2 CIITA chr16:11002840 3'AG 11002840 Downstream 77bp 19625 chr16 11002916 11002916 1 + G T UCEC 11002917 + 11002897 11002937 41 GCGACACGGTGGCGCTGTGGGAGTCCCTGCAGCAGCATGGG GCGACACGGTGGCGCTGTGTGAGTCCCTGCAGCAGCATGGG < 41bp 0.402879103872189 0.75018580068014 NA NA prediction 0.500371601360279 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11002917 chr16:11002916 nonsynonymous SNV 0.603 4 20 hm7G_associated_SNPs_21112 0 0 0 0 2 CIITA chr16:11002886 3'AG 11002886 Downstream 31bp 19626 chr10 99211645 99211645 1 + G T SKCM 99211646 + 99211626 99211666 41 TTGAGCCTGTCTACTGGCTGGTAGACAACGTGATCCGCTGG TTGAGCCTGTCTACTGGCTTGTAGACAACGTGATCCGCTGG < 41bp 0.626709189103844 0.876878980058273 NA NA prediction 0.500339581908858 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211646 chr10:99211645 synonymous SNV . 0 20 hm7G_associated_SNPs_21113 0 0 1 0 1 ZDHHC16 chr10:99211675 5'GT 99211675 Upstream 31bp 19627 chr2 85991284 85991284 1 + G T SARC 85991285 + 85991265 85991305 41 CCCGCACCCTGCAGGCCGAGGGACGTGCCAAGAAGCGCAAG CCCGCACCCTGCAGGCCGATGGACGTGCCAAGAAGCGCAAG < 41bp 0.633191450048416 0.883354839033308 NA NA prediction 0.500326777969784 Functional Gain - ATOH8 ENSG00000168874 CDS Human protein_coding chr2:85991285 chr2:85991284 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_21114 0 0 0 0 1 ATOH8 chr2:85991305 5'GT 85991305 Upstream 22bp 19628 chr17 38126781 38126781 1 + G T ESCA 38126782 + 38126762 38126802 41 GAAGGAGATGCAAGATCAAGGGGAGAACCTGTATGTGGTGA GAAGGAGATGCAAGATCAATGGGAGAACCTGTATGTGGTGA < 41bp 0.633468630242694 0.883620192819525 NA NA prediction 0.500303125153662 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38126782 chr17:38126781 nonsynonymous SNV 0.502 4 20 hm7G_associated_SNPs_21116 0 0 0 0 1 GSDMA chr17:38126735 3'AG 38126735 Downstream 47bp 19629 chr15 42133259 42133259 1 + G T LGG 42133260 + 42133240 42133280 41 GCTCTCTTCCCAGGGTGAGGGGCGCCTGGAAGTTGAATTTC GCTCTCTTCCCAGGGTGAGTGGCGCCTGGAAGTTGAATTTC < 41bp 0.465727879282023 0.75011621154017 NA NA prediction 0.500232423080341 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42133260 chr15:42133259 nonsynonymous SNV 0.009 2 20 hm7G_associated_SNPs_21117 0 0 1 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42133293 5'GT 42133293 Upstream 35bp 19630 chr7 75614492 75614492 1 + G T COAD 75614493 + 75614473 75614513 41 AGCTGCTGCCGCGCCTGCAGGCCCGCTACTACTCCATCGCC AGCTGCTGCCGCGCCTGCATGCCCGCTACTACTCCATCGCC < 41bp 0.410788005954054 0.750093265091482 NA NA prediction 0.500186530182965 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75614493 chr7:75614492 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_21119 0 0 1 0 1 POR chr7:75614525 5'GT 75614525 Upstream 34bp 19631 chr1 87029381 87029381 1 + G T UCEC 87029382 + 87029362 87029402 41 AGTGGGCTCACCTCCGGTGGGGAGTGTTTGATGAGTACAAT AGTGGGCTCACCTCCGGTGTGGAGTGTTTGATGAGTACAAT < 41bp 0.623102067668219 0.873190363155346 NA NA prediction 0.500176590974253 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87029382 chr1:87029381 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_21120 0 0 0 0 1 CLCA4 chr1:87029344 3'AG 87029344 Downstream 38bp 19632 chr12 122211396 122211396 1 + G T UCEC 122211397 + 122211377 122211417 41 CTGCGGGCCCTGGGGGAGAGGAACCACCTGGATCTCACAGT CTGCGGGCCCTGGGGGAGATGAACCACCTGGATCTCACAGT < 41bp 0.405526720743456 0.750084091684933 NA NA prediction 0.500168183369866 Functional Gain - TMEM120B ENSG00000188735 CDS Human protein_coding chr12:122211397 chr12:122211396 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21122 0 0 1 0 2 TMEM120B chr12:122211327 3'AG 122211327 Downstream 70bp 19633 chr12 122211396 122211396 1 + G T UCEC 122211397 + 122211377 122211417 41 CTGCGGGCCCTGGGGGAGAGGAACCACCTGGATCTCACAGT CTGCGGGCCCTGGGGGAGATGAACCACCTGGATCTCACAGT < 41bp 0.405526720743456 0.750084091684933 NA NA prediction 0.500168183369866 Functional Gain - TMEM120B ENSG00000188735 CDS Human protein_coding chr12:122211397 chr12:122211396 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21122 0 0 1 0 2 TMEM120B chr12:122211419 5'GT 122211419 Upstream 24bp 19634 chr2 103095360 103095360 1 + G T LUAD 103095361 + 103095341 103095381 41 CTGCCTCCTCATCCTGGTGGGGGCGCTGGTGGGCGGCATCA CTGCCTCCTCATCCTGGTGTGGGCGCTGGTGGGCGGCATCA < 41bp 0.627500538751104 0.877579264819913 NA NA prediction 0.500157452137619 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103095361 chr2:103095360 nonsynonymous SNV 0.513 4 20 hm7G_associated_SNPs_21124 0 0 0 0 1 SLC9A4 chr2:103095298 3'AG 103095298 Downstream 63bp 19635 chr14 65197535 65197535 1 + G T BLCA 65197536 + 65197516 65197556 41 GCTCCGTGGCCGCCCTGACGGAATGCATGCGGGACAAGCAG GCTCCGTGGCCGCCCTGACTGAATGCATGCGGGACAAGCAG < 41bp 0.399870254464021 0.750076823552134 NA NA prediction 0.500153647104268 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197536 chr14:65197535 synonymous SNV . 0 20 hm7G_associated_SNPs_21125 0 0 0 0 1 PLEKHG3 chr14:65197517 3'AG 65197517 Downstream 19bp 19636 chr5 140023463 140023463 1 + G T PAAD 140023464 + 140023444 140023484 41 TCAGAGATGAGCGTGTTGTGGCAGCCTTATTTATCCTTCTG TCAGAGATGAGCGTGTTGTTGCAGCCTTATTTATCCTTCTG < 41bp 0.408611749340578 0.750071192707754 NA NA prediction 0.500142385415508 Functional Gain - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140023464 chr5:140023463 synonymous SNV . 0 20 hm7G_associated_SNPs_21127 0 0 0 0 2 TMCO6 chr5:140023365 3'AG 140023365 Downstream 99bp 19637 chr5 140023463 140023463 1 + G T PAAD 140023464 + 140023444 140023484 41 TCAGAGATGAGCGTGTTGTGGCAGCCTTATTTATCCTTCTG TCAGAGATGAGCGTGTTGTTGCAGCCTTATTTATCCTTCTG < 41bp 0.408611749340578 0.750071192707754 NA NA prediction 0.500142385415508 Functional Gain - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140023464 chr5:140023463 synonymous SNV . 0 20 hm7G_associated_SNPs_21127 0 0 0 0 2 TMCO6 chr5:140023551 5'GT 140023551 Upstream 89bp 19638 chr1 20668945 20668945 1 + G T UCEC 20668946 + 20668926 20668966 41 CCTTGCTGAACAGTGGTCAGGACCTGAACCAGGGCCCCAAA CCTTGCTGAACAGTGGTCATGACCTGAACCAGGGCCCCAAA < 41bp 0.409510930962321 0.750038124162059 NA NA prediction 0.500076248324117 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20668946 chr1:20668945 nonsynonymous SNV 0.681 0 20 hm7G_associated_SNPs_21129 0 0 0 0 1 VWA5B1 chr1:20668925 3'AG 20668925 Downstream 21bp 19639 chr16 3163467 3163467 1 + G T UCEC 3163468 + 3163448 3163488 41 GAGGCATCCAGGACACCCAGGACAAGGAGACACCCCCGGAG GAGGCATCCAGGACACCCATGACAAGGAGACACCCCCGGAG < 41bp 0.409614471242087 0.75003600753066 NA NA prediction 0.500072015061321 Functional Gain - ZNF205 ENSG00000122386 CDS Human other chr16:3163468 chr16:3163467 nonsynonymous SNV 0.609 1 20 hm7G_associated_SNPs_21130 0 0 0 0 2 ZNF205-AS1 chr16:3163418 3'AG 3163418 Downstream 50bp 19640 chr16 3163467 3163467 1 + G T UCEC 3163468 + 3163448 3163488 41 GAGGCATCCAGGACACCCAGGACAAGGAGACACCCCCGGAG GAGGCATCCAGGACACCCATGACAAGGAGACACCCCCGGAG < 41bp 0.409614471242087 0.75003600753066 NA NA prediction 0.500072015061321 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3163468 chr16:3163467 nonsynonymous SNV 0.609 1 20 hm7G_associated_SNPs_21130 0 0 0 0 2 ZNF205 chr16:3163488 5'GT 3163488 Upstream 22bp 19641 chr16 55360430 55360430 1 + G T ACC 55360431 + 55360411 55360451 41 TCTATGGAGCACCCTATGCGGCCGCTGCAGCTGCCCAGAGC TCTATGGAGCACCCTATGCTGCCGCTGCAGCTGCCCAGAGC < 41bp 0.63238006746398 0.882405574649239 NA NA prediction 0.500051014370517 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360431 chr16:55360430 synonymous SNV . 0 20 hm7G_associated_SNPs_21132 0 0 0 1 1 IRX6 chr16:55360505 5'GT 55360505 Upstream 76bp 19642 chr10 18250546 18250546 1 + G T UCEC 18250547 + 18250527 18250567 41 ACTATTACTAATAGCTGGAGGAAATTTTGAAGATCAGCTTA ACTATTACTAATAGCTGGATGAAATTTTGAAGATCAGCTTA < 41bp 0.615404643652324 0.865407820232405 NA NA prediction 0.500006353160162 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18250547 chr10:18250546 stopgain 0.997 1 20 hm7G_associated_SNPs_21135 0 0 0 0 1 SLC39A12 chr10:18250510 3'AG 18250510 Downstream 37bp 19643 chr10 18270309 18270309 1 + G T LUAD 18270310 + 18270290 18270330 41 TCTCACTCATTTCTAAGGAGGACTTTAAGCAAATGAGTCCA TCTCACTCATTTCTAAGGATGACTTTAAGCAAATGAGTCCA < 41bp 0.617613603810381 0.867616208276707 NA NA prediction 0.500005208932653 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18270310 chr10:18270309 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21136 0 0 0 0 1 SLC39A12 chr10:18270241 3'AG 18270241 Downstream 69bp 19644 chr14 65507524 65507524 1 + G T STAD 65507525 + 65507505 65507545 41 TAGGTGTCAGAACTGGGAAGGTGGCATTGGCGGGGTACCAG TAGGTGTCAGAACTGGGAATGTGGCATTGGCGGGGTACCAG < 41bp 0.623929072691491 0.87392136368382 NA NA prediction 0.499984581984658 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65507525 chr14:65507524 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_21137 0 0 1 0 1 CHURC1-FNTB;FNTB chr14:65507508 3'AG 65507508 Downstream 17bp 19645 chr1 70877246 70877246 1 + G T LUAD 70877247 + 70877227 70877267 41 GTCCACCACGTTCAAGCAAGGGGCGCCTGGCCAGCACTCGG GTCCACCACGTTCAAGCAATGGGCGCCTGGCCAGCACTCGG < 41bp 0.437354612853067 0.749984996171963 NA NA prediction 0.499969992343925 Functional Gain - CTH ENSG00000116761 CDS Human protein_coding chr1:70877247 chr1:70877246 nonsynonymous SNV 0.038 2 20 hm7G_associated_SNPs_21139 0 0 1 1 1 CTH chr1:70877266 5'GT 70877266 Upstream 21bp 19646 chr15 41104925 41104925 1 + G T UCEC 41104926 + 41104906 41104946 41 TCCAGAATGATCTCAACCAGGGTGGCCCAGGGAGCACTAAT TCCAGAATGATCTCAACCATGGTGGCCCAGGGAGCACTAAT < 41bp 0.633740577510797 0.883720316577593 NA NA prediction 0.499959478133591 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41104926 chr15:41104925 nonsynonymous SNV 0.391 1 20 hm7G_associated_SNPs_21140 0 0 1 0 1 ZFYVE19 chr15:41104897 3'AG 41104897 Downstream 29bp 19647 chr6 43227402 43227402 1 + G T LUSC 43227403 + 43227383 43227423 41 AACAGCCCTGAGTCAGAAAGGCTGTCCACGGCGGACGGGCG AACAGCCCTGAGTCAGAAATGCTGTCCACGGCGGACGGGCG < 41bp 0.638986672315458 0.888953986478012 NA NA prediction 0.499934628325109 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43227403 chr6:43227402 nonsynonymous SNV 0.934 4 20 hm7G_associated_SNPs_21141 0 0 0 0 1 TTBK1 chr6:43227444 5'GT 43227444 Upstream 43bp 19648 chr19 43859865 43859865 1 + G T UCEC 43859866 + 43859846 43859886 41 CTATGGAAGGCTGTCTGGAGGGGACAACAGAAGAGATCTGC CTATGGAAGGCTGTCTGGATGGGACAACAGAAGAGATCTGC < 41bp 0.415304798369322 0.749965239228936 NA NA prediction 0.499930478457871 Functional Gain - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859866 chr19:43859865 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_21142 0 0 0 0 2 CD177 chr19:43859813 3'AG 43859813 Downstream 53bp 19649 chr19 43859865 43859865 1 + G T UCEC 43859866 + 43859846 43859886 41 CTATGGAAGGCTGTCTGGAGGGGACAACAGAAGAGATCTGC CTATGGAAGGCTGTCTGGATGGGACAACAGAAGAGATCTGC < 41bp 0.415304798369322 0.749965239228936 NA NA prediction 0.499930478457871 Functional Gain - CD177 ENSG00000204936 CDS Human protein_coding chr19:43859866 chr19:43859865 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_21142 0 0 0 0 2 CD177 chr19:43859935 5'GT 43859935 Upstream 71bp 19650 chrX 68725964 68725964 1 + G T UCEC 68725965 + 68725945 68725985 41 GCGGAAGAGTACTCAATCCGGTCCTGCACGAAAGGCTGTAA GCGGAAGAGTACTCAATCCTGTCCTGCACGAAAGGCTGTAA < 41bp 0.425022246475818 0.749937341562102 NA NA prediction 0.499874683124204 Functional Gain - FAM155B ENSG00000130054 CDS Human protein_coding chrX:68725965 chrX:68725964 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21144 0 0 1 0 1 FAM155B chrX:68725986 5'GT 68725986 Upstream 23bp 19651 chr4 39435905 39435905 1 + G T STAD 39435906 + 39435886 39435926 41 TTGGTTATCGATCACGTTGGGATCTCATTGGATCGAGCCAA TTGGTTATCGATCACGTTGTGATCTCATTGGATCGAGCCAA < 41bp 0.620703956578737 0.870640557241863 NA NA prediction 0.499873201326252 Functional Gain - KLB ENSG00000134962 CDS Human protein_coding chr4:39435906 chr4:39435905 stopgain 0.834 1 20 hm7G_associated_SNPs_21145 0 0 0 0 1 KLB chr4:39435830 3'AG 39435830 Downstream 76bp 19652 chrX 149832069 149832069 1 + G T UCEC 149832070 + 149832050 149832090 41 TACATTAGATGGAACCCCAGGATCAAGCAACAAGTAAGTGA TACATTAGATGGAACCCCATGATCAAGCAACAAGTAAGTGA < 41bp 0.610754361296232 0.860677509848156 NA NA prediction 0.499846297103848 Functional Gain - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149832070 chrX:149832069 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_21146 0 0 0 1 1 MTM1 chrX:149832082 5'GT 149832082 Upstream 14bp 19653 chr2 73441463 73441463 1 + G T LUAD 73441464 + 73441444 73441484 41 GCCGCGCGCGGGTCTCCGTGGAAGTCCGTTTCGTGAGCAGC GCCGCGCGCGGGTCTCCGTTGAAGTCCGTTTCGTGAGCAGC < 41bp 0.619891298875798 0.869788549734352 NA NA prediction 0.499794501717107 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73441464 chr2:73441463 synonymous SNV . 0 20 hm7G_associated_SNPs_21149 0 0 1 0 1 SMYD5 chr2:73441490 5'GT 73441490 Upstream 28bp 19654 chr19 50949242 50949242 1 + G T UCEC 50949243 + 50949223 50949263 41 TCTTCTCAGACGTGGTCCAGGAGGACAGGGGTCGCTATCAG TCTTCTCAGACGTGGTCCATGAGGACAGGGGTCGCTATCAG < 41bp 0.6340313554055 0.883924579554351 NA NA prediction 0.499786448297701 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50949243 chr19:50949242 nonsynonymous SNV 0.101 0 20 hm7G_associated_SNPs_21150 0 0 0 0 1 MYBPC2 chr19:50949309 5'GT 50949309 Upstream 68bp 19655 chr8 70517109 70517109 1 + G T BLCA 70517110 + 70517090 70517130 41 CACTTGCCCAAATATGAACGGGTCAAAGAACTATGCCAGCA CACTTGCCCAAATATGAACTGGTCAAAGAACTATGCCAGCA < 41bp 0.624161075530028 0.874017476573079 NA NA prediction 0.499712802086103 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517110 chr8:70517109 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_21153 0 0 0 0 2 SULF1 chr8:70517038 3'AG 70517038 Downstream 72bp 19656 chr8 70517109 70517109 1 + G T BLCA 70517110 + 70517090 70517130 41 CACTTGCCCAAATATGAACGGGTCAAAGAACTATGCCAGCA CACTTGCCCAAATATGAACTGGTCAAAGAACTATGCCAGCA < 41bp 0.624161075530028 0.874017476573079 NA NA prediction 0.499712802086103 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517110 chr8:70517109 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_21153 0 0 0 0 2 SULF1 chr8:70517167 5'GT 70517167 Upstream 59bp 19657 chr20 2845908 2845908 1 + G T LUSC 2845909 + 2845889 2845929 41 TACCACCCTCATTCTTGGCGGTCACAACAAGCGTGCAGAGC TACCACCCTCATTCTTGGCTGTCACAACAAGCGTGCAGAGC < 41bp 0.41964585941951 0.749855624457079 NA NA prediction 0.499711248914157 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2845909 chr20:2845908 nonsynonymous SNV 0.313 4 20 hm7G_associated_SNPs_21155 0 0 0 1 1 VPS16 chr20:2845963 5'GT 2845963 Upstream 56bp 19658 chr2 79349170 79349170 1 + G T HNSC 79349171 + 79349151 79349191 41 CTGTGCTCACCCAGGCCGAGGGTGCCTTTGTGGCCTCACTG CTGTGCTCACCCAGGCCGATGGTGCCTTTGTGGCCTCACTG < 41bp 0.402302304562439 0.749852146402386 NA NA prediction 0.499704292804773 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349171 chr2:79349170 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_21156 0 0 0 0 2 REG1A chr2:79349114 3'AG 79349114 Downstream 57bp 19659 chr2 79349170 79349170 1 + G T HNSC 79349171 + 79349151 79349191 41 CTGTGCTCACCCAGGCCGAGGGTGCCTTTGTGGCCTCACTG CTGTGCTCACCCAGGCCGATGGTGCCTTTGTGGCCTCACTG < 41bp 0.402302304562439 0.749852146402386 NA NA prediction 0.499704292804773 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79349171 chr2:79349170 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_21156 0 0 0 0 2 REG1A chr2:79349251 5'GT 79349251 Upstream 82bp 19660 chr1 236645625 236645625 1 + G T LUSC 236645626 + 236645606 236645646 41 GTTCCTCCTGCTTGCTCCGGGCCCCCACCATAAGTGACTTG GTTCCTCCTGCTTGCTCCGTGCCCCCACCATAAGTGACTTG < 41bp 0.422471831925122 0.749842273245822 NA NA prediction 0.499684546491643 Functional Gain - EDARADD ENSG00000186197 CDS Human protein_coding chr1:236645626 chr1:236645625 synonymous SNV . 0 20 hm7G_associated_SNPs_21157 0 0 0 0 1 EDARADD chr1:236645567 3'AG 236645567 Downstream 59bp 19661 chr1 861370 861370 1 + G T UCEC 861371 + 861351 861391 41 TCCGATCTGCGACTGCCCGGGCTGCCGAATATCCTCCCCGG TCCGATCTGCGACTGCCCGTGCTGCCGAATATCCTCCCCGG < 41bp 0.565444262993809 0.815284200532882 NA NA prediction 0.499679875078146 Functional Gain - SAMD11 ENSG00000187634;ENSG00000268179 CDS Human other chr1:861371 chr1:861370 nonsynonymous SNV 0.843 2 20 hm7G_associated_SNPs_21158 0 0 1 0 1 SAMD11 chr1:861393 5'GT 861393 Upstream 24bp 19662 chr3 195953912 195953912 1 + G T LGG 195953913 + 195953893 195953933 41 CCATTGCCATCTTCCTGGAGGATGCCGTCTACCTGTACAAG CCATTGCCATCTTCCTGGATGATGCCGTCTACCTGTACAAG < 41bp 0.633370541807743 0.883207012988302 NA NA prediction 0.499672942361118 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195953913 chr3:195953912 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_21159 0 0 1 0 2 SLC51A chr3:195953836 3'AG 195953836 Downstream 77bp 19663 chr3 195953912 195953912 1 + G T LGG 195953913 + 195953893 195953933 41 CCATTGCCATCTTCCTGGAGGATGCCGTCTACCTGTACAAG CCATTGCCATCTTCCTGGATGATGCCGTCTACCTGTACAAG < 41bp 0.633370541807743 0.883207012988302 NA NA prediction 0.499672942361118 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195953913 chr3:195953912 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_21159 0 0 1 0 2 SLC51A chr3:195953990 5'GT 195953990 Upstream 79bp 19664 chr15 43482277 43482277 1 + G T SARC 43482278 + 43482258 43482298 41 ACCCTGAGAAAGCTGGTACGGGGCGCCACCCTGGACATCGT ACCCTGAGAAAGCTGGTACTGGGCGCCACCCTGGACATCGT < 41bp 0.421918354168095 0.749833080475227 NA NA prediction 0.499666160950454 Functional Gain - CCNDBP1 ENSG00000166946 CDS Human protein_coding chr15:43482278 chr15:43482277 nonsynonymous SNV 0.581 4 20 hm7G_associated_SNPs_21160 0 0 1 0 2 CCNDBP1 chr15:43482253 3'AG 43482253 Downstream 25bp 19665 chr15 43482277 43482277 1 + G T SARC 43482278 + 43482258 43482298 41 ACCCTGAGAAAGCTGGTACGGGGCGCCACCCTGGACATCGT ACCCTGAGAAAGCTGGTACTGGGCGCCACCCTGGACATCGT < 41bp 0.421918354168095 0.749833080475227 NA NA prediction 0.499666160950454 Functional Gain - CCNDBP1 ENSG00000166946 CDS Human protein_coding chr15:43482278 chr15:43482277 nonsynonymous SNV 0.581 4 20 hm7G_associated_SNPs_21160 0 0 1 0 2 CCNDBP1 chr15:43482349 5'GT 43482349 Upstream 73bp 19666 chr19 36362206 36362206 1 + G T PAAD 36362207 + 36362187 36362227 41 TCTTGCACCAGGAGCGCATGGACCAATGTGAGAGTTCAACC TCTTGCACCAGGAGCGCATTGACCAATGTGAGAGTTCAACC < 41bp 0.641892350634907 0.891718134015702 NA NA prediction 0.499651566761589 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36362207 chr19:36362206 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_21161 0 0 0 0 2 APLP1 chr19:36362139 3'AG 36362139 Downstream 68bp 19667 chr19 36362206 36362206 1 + G T PAAD 36362207 + 36362187 36362227 41 TCTTGCACCAGGAGCGCATGGACCAATGTGAGAGTTCAACC TCTTGCACCAGGAGCGCATTGACCAATGTGAGAGTTCAACC < 41bp 0.641892350634907 0.891718134015702 NA NA prediction 0.499651566761589 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36362207 chr19:36362206 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_21161 0 0 0 0 2 APLP1 chr19:36362251 5'GT 36362251 Upstream 46bp 19668 chr5 178996406 178996406 1 + G T UCEC 178996407 + 178996387 178996427 41 TGCCAATCTCTGCTTGAAAGGAGAAGACTTGGATTCTCAGG TGCCAATCTCTGCTTGAAATGAGAAGACTTGGATTCTCAGG < 41bp 0.418891100628276 0.749815270495866 NA NA prediction 0.499630540991731 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178996407 chr5:178996406 stopgain 0.999 1 20 hm7G_associated_SNPs_21163 0 0 1 0 1 RUFY1 chr5:178996426 5'GT 178996426 Upstream 21bp 19669 chr6 3287280 3287280 1 - C A LUAD 3287279 - 3287259 3287299 41 GCTTTGCCAGGAGCATGATGGGCCACGAGGTGAAGGTGCCG GCTTTGCCAGGAGCATGATTGGCCACGAGGTGAAGGTGCCG < 41bp 0.638840653503418 0.888650370934638 NA NA prediction 0.49961943486244 Functional Gain - SLC22A23 ENSG00000137266 CDS Human protein_coding chr6:3287279 chr6:3287280 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21164 0 0 1 0 1 SLC22A23 chr6:3287325 3'AG 3287325 Downstream 46bp 19670 chr2 56611464 56611464 1 + G T STAD 56611465 + 56611445 56611485 41 AATTAGGCAACATTTGTCAGGAAACCAGTACAAAGGACCAA AATTAGGCAACATTTGTCATGAAACCAGTACAAAGGACCAA < 41bp 0.598934346634532 0.848734032523822 NA NA prediction 0.499599371778579 Functional Gain - CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56611465 chr2:56611464 stopgain 1.000 0 20 hm7G_associated_SNPs_21165 0 0 0 0 1 CCDC85A chr2:56611401 3'AG 56611401 Downstream 64bp 19671 chr16 31371783 31371783 1 + G T LUAD 31371784 + 31371764 31371804 41 ATCATCCGCTATGCAATTGGGGTAGGGCGTGGGATGGCTTC ATCATCCGCTATGCAATTGTGGTAGGGCGTGGGATGGCTTC < 41bp 0.630662201600464 0.880438524004415 NA NA prediction 0.499552644807902 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31371784 chr16:31371783 nonsynonymous SNV 0.815 4 20 hm7G_associated_SNPs_21166 0 0 0 0 1 ITGAX chr16:31371784 5'GT 31371784 Upstream 2bp 19672 chr11 47436693 47436693 1 + G T LIHC 47436694 + 47436674 47436714 41 ACGTGCTCCCTGACCTCTTGGAAGAAGAGGACCCGTGGTGA ACGTGCTCCCTGACCTCTTTGAAGAAGAGGACCCGTGGTGA < 41bp 0.613006800119348 0.862770718248993 NA NA prediction 0.49952783625929 Functional Gain - SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47436694 chr11:47436693 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21167 0 0 1 0 2 SLC39A13 chr11:47436611 3'AG 47436611 Downstream 83bp 19673 chr11 47436693 47436693 1 + G T LIHC 47436694 + 47436674 47436714 41 ACGTGCTCCCTGACCTCTTGGAAGAAGAGGACCCGTGGTGA ACGTGCTCCCTGACCTCTTTGAAGAAGAGGACCCGTGGTGA < 41bp 0.613006800119348 0.862770718248993 NA NA prediction 0.49952783625929 Functional Gain - SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47436694 chr11:47436693 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21167 0 0 1 0 2 SLC39A13 chr11:47436710 5'GT 47436710 Upstream 18bp 19674 chr5 55202036 55202036 1 + G T UCEC 55202037 + 55202017 55202057 41 AACACTTGGATGATTGAATGGTTTCCGGATGTGGACTCAGA AACACTTGGATGATTGAATTGTTTCCGGATGTGGACTCAGA < 41bp 0.622990747304522 0.872754089130651 NA NA prediction 0.499526683652258 Functional Gain - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55202037 chr5:55202036 nonsynonymous SNV 0.959 4 20 hm7G_associated_SNPs_21168 0 0 0 0 1 IL31RA chr5:55202116 5'GT 55202116 Upstream 81bp 19675 chr2 25022560 25022560 1 + G T UCEC 25022561 + 25022541 25022581 41 TAGGTGTTTTAGCTCACTTGGAAAGGCTAGAGACCCAAGTG TAGGTGTTTTAGCTCACTTTGAAAGGCTAGAGACCCAAGTG < 41bp 0.627490471790175 0.87724944379218 NA NA prediction 0.499517944004011 Functional Gain - CENPO ENSG00000138092 CDS Human protein_coding chr2:25022561 chr2:25022560 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_21169 0 0 1 0 1 CENPO chr2:25022544 3'AG 25022544 Downstream 17bp 19676 chr12 72288108 72288108 1 + G T GBM 72288109 + 72288089 72288129 41 TTTTTTTTGTATGAAGGCAGGACTGCTAGACAGAAGAAAGC TTTTTTTTGTATGAAGGCATGACTGCTAGACAGAAGAAAGC < 41bp 0.450829981956438 0.749754482403617 NA NA prediction 0.499508964807234 Functional Gain - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72288109 chr12:72288108 stopgain 1.000 0 20 hm7G_associated_SNPs_21170 0 0 1 0 2 TBC1D15 chr12:72288105 3'AG 72288105 Downstream 4bp 19677 chr12 72288108 72288108 1 + G T GBM 72288109 + 72288089 72288129 41 TTTTTTTTGTATGAAGGCAGGACTGCTAGACAGAAGAAAGC TTTTTTTTGTATGAAGGCATGACTGCTAGACAGAAGAAAGC < 41bp 0.450829981956438 0.749754482403617 NA NA prediction 0.499508964807234 Functional Gain - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72288109 chr12:72288108 stopgain 1.000 0 20 hm7G_associated_SNPs_21170 0 0 1 0 2 TBC1D15 chr12:72288155 5'GT 72288155 Upstream 48bp 19678 chr10 102796866 102796866 1 + G T UCEC 102796867 + 102796847 102796887 41 GCATCCCGGTGGCTGATGAGGCAGGTCAGAGGCTTGGCTAC GCATCCCGGTGGCTGATGATGCAGGTCAGAGGCTTGGCTAC < 41bp 0.631112046274287 0.880862016913988 NA NA prediction 0.499499941279401 Functional Gain - SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102796867 chr10:102796866 nonsynonymous SNV 0.797 1 20 hm7G_associated_SNPs_21171 0 0 1 0 2 SFXN3 chr10:102796833 3'AG 102796833 Downstream 34bp 19679 chr10 102796866 102796866 1 + G T UCEC 102796867 + 102796847 102796887 41 GCATCCCGGTGGCTGATGAGGCAGGTCAGAGGCTTGGCTAC GCATCCCGGTGGCTGATGATGCAGGTCAGAGGCTTGGCTAC < 41bp 0.631112046274287 0.880862016913988 NA NA prediction 0.499499941279401 Functional Gain - SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102796867 chr10:102796866 nonsynonymous SNV 0.797 1 20 hm7G_associated_SNPs_21171 0 0 1 0 2 SFXN3 chr10:102796960 5'GT 102796960 Upstream 95bp 19680 chr8 68956812 68956812 1 + G T SKCM 68956813 + 68956793 68956833 41 TGATGGAAGTGGAGAATGTGGATGATGGCACCGGTAAGTGA TGATGGAAGTGGAGAATGTTGATGATGGCACCGGTAAGTGA < 41bp 0.419508969249232 0.74974975961874 NA NA prediction 0.49949951923748 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68956813 chr8:68956812 synonymous SNV . 0 20 hm7G_associated_SNPs_21172 0 0 0 0 2 PREX2 chr8:68956722 3'AG 68956722 Downstream 91bp 19681 chr8 68956812 68956812 1 + G T SKCM 68956813 + 68956793 68956833 41 TGATGGAAGTGGAGAATGTGGATGATGGCACCGGTAAGTGA TGATGGAAGTGGAGAATGTTGATGATGGCACCGGTAAGTGA < 41bp 0.419508969249232 0.74974975961874 NA NA prediction 0.49949951923748 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68956813 chr8:68956812 synonymous SNV . 0 20 hm7G_associated_SNPs_21172 0 0 0 0 2 PREX2 chr8:68956825 5'GT 68956825 Upstream 14bp 19682 chr14 105204723 105204723 1 + G T LUSC 105204724 + 105204704 105204744 41 CTCATGCAGGCAACGGGGTGGTCATCCACTTGCCAGGCTTG CTCATGCAGGCAACGGGGTTGTCATCCACTTGCCAGGCTTG < 41bp 0.411842201212422 0.7497416099408 NA NA prediction 0.499483219881601 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105204724 chr14:105204723 synonymous SNV . 0 20 hm7G_associated_SNPs_21174 0 0 1 0 2 ADSSL1 chr14:105204713 3'AG 105204713 Downstream 11bp 19683 chr14 105204723 105204723 1 + G T LUSC 105204724 + 105204704 105204744 41 CTCATGCAGGCAACGGGGTGGTCATCCACTTGCCAGGCTTG CTCATGCAGGCAACGGGGTTGTCATCCACTTGCCAGGCTTG < 41bp 0.411842201212422 0.7497416099408 NA NA prediction 0.499483219881601 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105204724 chr14:105204723 synonymous SNV . 0 20 hm7G_associated_SNPs_21174 0 0 1 0 2 ADSSL1 chr14:105204775 5'GT 105204775 Upstream 53bp 19684 chr11 63960753 63960753 1 + G T LUAD 63960754 + 63960734 63960774 41 TCGACCTAAAGCCTGACTGGGGCAAGGTCAGCTGTGGGCAG TCGACCTAAAGCCTGACTGTGGCAAGGTCAGCTGTGGGCAG < 41bp 0.631714278568844 0.881434186247313 NA NA prediction 0.499439815356939 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63960754 chr11:63960753 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21177 0 0 1 0 1 STIP1 chr11:63960759 5'GT 63960759 Upstream 7bp 19685 chr20 33509154 33509154 1 + G T PRAD 33509155 + 33509135 33509175 41 ATAGCCGGGCATCCTTGCAGGTGTTAGGCACAGTGGGTGAA ATAGCCGGGCATCCTTGCATGTGTTAGGCACAGTGGGTGAA < 41bp 0.414011169201725 0.749718056891968 NA NA prediction 0.499436113783936 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33509155 chr20:33509154 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21178 0 0 1 0 1 ACSS2 chr20:33509133 3'AG 33509133 Downstream 22bp 19686 chr1 248039272 248039272 1 + G T STAD 248039273 + 248039253 248039293 41 CCGACCTGCGCAGTGTGCAGGATGGAGAACCATGGAGGGAT CCGACCTGCGCAGTGTGCATGATGGAGAACCATGGAGGGAT < 41bp 0.609471624848699 0.859179706717559 NA NA prediction 0.499416163737721 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039273 chr1:248039272 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_21180 0 0 0 0 2 TRIM58 chr1:248039202 3'AG 248039202 Downstream 71bp 19687 chr1 248039272 248039272 1 + G T STAD 248039273 + 248039253 248039293 41 CCGACCTGCGCAGTGTGCAGGATGGAGAACCATGGAGGGAT CCGACCTGCGCAGTGTGCATGATGGAGAACCATGGAGGGAT < 41bp 0.609471624848699 0.859179706717559 NA NA prediction 0.499416163737721 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039273 chr1:248039272 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_21180 0 0 0 0 2 TRIM58 chr1:248039339 5'GT 248039339 Upstream 68bp 19688 chr16 48333586 48333586 1 + G T UCEC 48333587 + 48333567 48333607 41 TTCCAGGTTATACACAGGAGGAGAAGATAGAGATTGCCCAT TTCCAGGTTATACACAGGATGAGAAGATAGAGATTGCCCAT < 41bp 0.611735599251641 0.861439249406733 NA NA prediction 0.499407300310183 Functional Gain - LONP2 ENSG00000102910 CDS Human protein_coding chr16:48333587 chr16:48333586 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21181 0 0 1 1 1 LONP2 chr16:48333573 3'AG 48333573 Downstream 14bp 19689 chr1 40916716 40916716 1 + G T UCEC 40916717 + 40916697 40916737 41 CCAAAGGCGGCCACGGAGCGGGTGGCCCTGTGGGAGGATGT CCAAAGGCGGCCACGGAGCTGGTGGCCCTGTGGGAGGATGT < 41bp 0.599919141496044 0.849622060265378 NA NA prediction 0.499405837538668 Functional Gain - ZFP69B ENSG00000187801 CDS Human protein_coding chr1:40916717 chr1:40916716 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_21182 0 0 0 0 1 ZFP69B chr1:40916760 5'GT 40916760 Upstream 45bp 19690 chr5 156671307 156671307 1 + G T LUAD 156671308 + 156671288 156671328 41 AAACTGGTGCAGCTGTATGGGGTGTGCCTGGAGCAGGCCCC AAACTGGTGCAGCTGTATGTGGTGTGCCTGGAGCAGGCCCC < 41bp 0.62655848375434 0.876251771882583 NA NA prediction 0.499386576256485 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156671308 chr5:156671307 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_21183 0 0 0 0 1 ITK chr5:156671272 3'AG 156671272 Downstream 36bp 19691 chr16 2283161 2283161 1 + G T UCEC 2283162 + 2283142 2283182 41 GATGCAGGAGCTGTCCCTGGGCATGAAAGCCCTGGCCCCAG GATGCAGGAGCTGTCCCTGTGCATGAAAGCCCTGGCCCCAG < 41bp 0.629412131935604 0.879096930104294 NA NA prediction 0.499369596337381 Functional Gain - E4F1 ENSG00000167967 CDS Human protein_coding chr16:2283162 chr16:2283161 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21186 0 0 1 0 1 E4F1 chr16:2283184 5'GT 2283184 Upstream 24bp 19692 chr2 242148923 242148923 1 + G T LUAD 242148924 + 242148904 242148944 41 CCCTTCCAGGAGAGGCCTCGGCCCCAGTTTGCCGCCTCAGC CCCTTCCAGGAGAGGCCTCTGCCCCAGTTTGCCGCCTCAGC < 41bp 0.406836971032373 0.749668940688462 NA NA prediction 0.499337881376924 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242148924 chr2:242148923 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_21190 0 0 0 0 1 ANO7 chr2:242148913 3'AG 242148913 Downstream 11bp 19693 chr14 74008278 74008278 1 + G T COAD 74008279 + 74008259 74008299 41 CGGGCTAGTCTGCTGGCTGGGAAGGGTTTTGCTGTGATGGC CGGGCTAGTCTGCTGGCTGTGAAGGGTTTTGCTGTGATGGC < 41bp 0.420572525844339 0.749665866398368 NA NA prediction 0.499331732796737 Functional Gain - ACOT1 ENSG00000184227 CDS Human protein_coding chr14:74008279 chr14:74008278 nonsynonymous SNV 0.576 3 20 hm7G_associated_SNPs_21191 0 0 0 0 1 ACOT1 chr14:74008197 3'AG 74008197 Downstream 82bp 19694 chr2 190323582 190323582 1 + G T LUAD 190323583 + 190323563 190323603 41 CGCATCTGGTCACATGGATGGCAAAATTCGTCTTTGGTCAG CGCATCTGGTCACATGGATTGCAAAATTCGTCTTTGGTCAG < 41bp 0.42307205451455 0.74964583551679 NA NA prediction 0.499291671033579 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190323583 chr2:190323582 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21194 0 0 1 0 1 WDR75 chr2:190323598 5'GT 190323598 Upstream 17bp 19695 chr3 112064111 112064111 1 + G T OV 112064112 + 112064092 112064132 41 TGGTTTTGGGAAGATCTCAGGAACGGCCTGCCTCACCGTCT TGGTTTTGGGAAGATCTCATGAACGGCCTGCCTCACCGTCT < 41bp 0.622086472623166 0.871720581295928 NA NA prediction 0.499268217345525 Functional Gain - CD200 ENSG00000091972 CDS Human protein_coding chr3:112064112 chr3:112064111 stopgain 0.963 0 20 hm7G_associated_SNPs_21197 0 0 0 0 1 CD200 chr3:112064135 5'GT 112064135 Upstream 25bp 19696 chr17 32956163 32956163 1 + G T UCEC 32956164 + 32956144 32956184 41 CCCTGCCTGACCTGGAGCGGGCAGTCACTGAGCTGACGGTC CCCTGCCTGACCTGGAGCGTGCAGTCACTGAGCTGACGGTC < 41bp 0.641491609947526 0.891119904593968 NA NA prediction 0.499256589292886 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32956164 chr17:32956163 synonymous SNV . 0 20 hm7G_associated_SNPs_21199 0 0 0 0 1 TMEM132E chr17:32956223 5'GT 32956223 Upstream 61bp 19697 chr10 30747044 30747044 1 + G T BRCA 30747045 + 30747025 30747065 41 CCAGAGGTCATCCTGTGCAGGGGCCATTCAACCAAAGCAGA CCAGAGGTCATCCTGTGCATGGGCCATTCAACCAAAGCAGA < 41bp 0.628066983411107 0.877681962253749 NA NA prediction 0.499229957685285 Functional Gain - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30747045 chr10:30747044 nonsynonymous SNV 0.950 4 20 hm7G_associated_SNPs_21200 0 0 0 0 1 MAP3K8 chr10:30747013 3'AG 30747013 Downstream 32bp 19698 chr19 35608217 35608217 1 + G T UCEC 35608218 + 35608198 35608238 41 CTGGATGACATCATGGGAAGGGGGTATAGTGGGGCCTTGCA CTGGATGACATCATGGGAATGGGGTATAGTGGGGCCTTGCA < 41bp 0.427459425788492 0.749607247054449 NA NA prediction 0.499214494108899 Functional Gain - FXYD3 ENSG00000089356 CDS Human protein_coding chr19:35608218 chr19:35608217 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_21201 0 0 0 0 2 FXYD3 chr19:35608161 3'AG 35608161 Downstream 57bp 19699 chr19 35608217 35608217 1 + G T UCEC 35608218 + 35608198 35608238 41 CTGGATGACATCATGGGAAGGGGGTATAGTGGGGCCTTGCA CTGGATGACATCATGGGAATGGGGTATAGTGGGGCCTTGCA < 41bp 0.427459425788492 0.749607247054449 NA NA prediction 0.499214494108899 Functional Gain - FXYD3 ENSG00000089356 CDS Human protein_coding chr19:35608218 chr19:35608217 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_21201 0 0 0 0 2 FXYD3 chr19:35608282 5'GT 35608282 Upstream 66bp 19700 chr1 156552954 156552954 1 + G T LIHC 156552955 + 156552935 156552975 41 CATGCCCTGCAGGCTGCCCGGGACTCTGGTAAGCGTGAGAG CATGCCCTGCAGGCTGCCCTGGACTCTGGTAAGCGTGAGAG < 41bp 0.632363443653069 0.881964742042743 NA NA prediction 0.499202596779348 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156552955 chr1:156552954 nonsynonymous SNV 0.279 1 20 hm7G_associated_SNPs_21202 0 0 0 0 1 TTC24 chr1:156552962 5'GT 156552962 Upstream 9bp 19701 chr14 76107368 76107368 1 + G T SARC 76107369 + 76107349 76107389 41 CACGTACCCAGAATCAGAAGGCATCTCCTCCGGCCTCCTCA CACGTACCCAGAATCAGAATGCATCTCCTCCGGCCTCCTCA < 41bp 0.633794294812164 0.883386872012293 NA NA prediction 0.499185154400259 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107369 chr14:76107368 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_21203 0 0 0 0 2 FLVCR2 chr14:76107298 3'AG 76107298 Downstream 71bp 19702 chr14 76107368 76107368 1 + G T SARC 76107369 + 76107349 76107389 41 CACGTACCCAGAATCAGAAGGCATCTCCTCCGGCCTCCTCA CACGTACCCAGAATCAGAATGCATCTCCTCCGGCCTCCTCA < 41bp 0.633794294812164 0.883386872012293 NA NA prediction 0.499185154400259 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107369 chr14:76107368 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_21203 0 0 0 0 2 FLVCR2 chr14:76107403 5'GT 76107403 Upstream 36bp 19703 chr1 209948708 209948708 1 + G T STAD 209948709 + 209948689 209948729 41 TACAGAAATACTCCCCTTGGGGAATGAAAAAAGTACTACTG TACAGAAATACTCCCCTTGTGGAATGAAAAAAGTACTACTG < 41bp 0.623475393256277 0.873059562496142 NA NA prediction 0.499168338479731 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209948709 chr1:209948708 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_21204 0 0 0 0 1 TRAF3IP3 chr1:209948694 3'AG 209948694 Downstream 15bp 19704 chr22 29706492 29706492 1 + G T COAD 29706493 + 29706473 29706513 41 CATGATCAAGGTCTCAGAGGGGAAGTACCGTGTGGGGGACT CATGATCAAGGTCTCAGAGTGGAAGTACCGTGTGGGGGACT < 41bp 0.633586828131739 0.883169946299348 NA NA prediction 0.499166236335216 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706493 chr22:29706492 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_21205 0 0 0 0 2 GAS2L1 chr22:29706429 3'AG 29706429 Downstream 64bp 19705 chr22 29706492 29706492 1 + G T COAD 29706493 + 29706473 29706513 41 CATGATCAAGGTCTCAGAGGGGAAGTACCGTGTGGGGGACT CATGATCAAGGTCTCAGAGTGGAAGTACCGTGTGGGGGACT < 41bp 0.633586828131739 0.883169946299348 NA NA prediction 0.499166236335216 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29706493 chr22:29706492 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_21205 0 0 0 0 2 GAS2L1 chr22:29706536 5'GT 29706536 Upstream 45bp 19706 chrX 19378894 19378894 1 - C A SKCM 19378893 - 19378873 19378913 41 AGTACAGAAGGGCTCAGGAGGCCTCAGAAACCAAAGACAAG AGTACAGAAGGGCTCAGGATGCCTCAGAAACCAAAGACAAG < 41bp 0.433283314784557 0.74958059300805 NA NA prediction 0.4991611860161 Functional Gain - MAP3K15 ENSG00000180815 CDS Human protein_coding chrX:19378893 chrX:19378894 nonsynonymous SNV 0.058 0 20 hm7G_associated_SNPs_21206 0 0 0 0 1 MAP3K15 chrX:19378951 3'AG 19378951 Downstream 58bp 19707 chr17 30534038 30534038 1 + G T UCEC 30534039 + 30534019 30534059 41 TCCTTTGAATACTGTGCCAGGATTTTTAAGGTTTGTTGCTC TCCTTTGAATACTGTGCCATGATTTTTAAGGTTTGTTGCTC < 41bp 0.43522797105627 0.749566786264854 NA NA prediction 0.499133572529707 Functional Gain - RHOT1 ENSG00000126858 CDS Human protein_coding chr17:30534039 chr17:30534038 stopgain 1.000 2 20 hm7G_associated_SNPs_21209 0 0 1 0 1 RHOT1 chr17:30534048 5'GT 30534048 Upstream 11bp 19708 chr10 106125670 106125670 1 + G T LUAD 106125671 + 106125651 106125691 41 AGCAGATTCAGGCAGACATGGACAGCAGGCAGACAGAAATA AGCAGATTCAGGCAGACATTGACAGCAGGCAGACAGAAATA < 41bp 0.631348143960972 0.880910602026619 NA NA prediction 0.499124916131295 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106125671 chr10:106125670 nonsynonymous SNV 0.943 1 20 hm7G_associated_SNPs_21210 0 0 0 0 2 CFAP58 chr10:106125572 3'AG 106125572 Downstream 99bp 19709 chr10 106125670 106125670 1 + G T LUAD 106125671 + 106125651 106125691 41 AGCAGATTCAGGCAGACATGGACAGCAGGCAGACAGAAATA AGCAGATTCAGGCAGACATTGACAGCAGGCAGACAGAAATA < 41bp 0.631348143960972 0.880910602026619 NA NA prediction 0.499124916131295 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106125671 chr10:106125670 nonsynonymous SNV 0.943 1 20 hm7G_associated_SNPs_21210 0 0 0 0 2 CFAP58 chr10:106125766 5'GT 106125766 Upstream 97bp 19710 chr5 14713083 14713083 1 - C A LGG 14713082 - 14713062 14713102 41 CTTTGTGTTCTCATCTGCAGGGTGCACGGTGCGACCCTGGG CTTTGTGTTCTCATCTGCATGGTGCACGGTGCGACCCTGGG < 41bp 0.624206793132131 0.873742705579789 NA NA prediction 0.499071824895316 Functional Gain - LOC100130744;ANKH ENSG00000154122 splicing Human protein_coding chr5:14713082 chr5:14713083 . 0.060 0 20 hm7G_associated_SNPs_21213 0 0 0 0 1 ANKH chr5:14713082 5'GT 14713082 Upstream 2bp 19711 chr2 99226258 99226258 1 + G T UCEC 99226259 + 99226239 99226279 41 CAGTGAATTCCTTAGTGCAGGGGAACGGAGTCTTGAATTCC CAGTGAATTCCTTAGTGCATGGGAACGGAGTCTTGAATTCC < 41bp 0.611542229696156 0.861073576489543 NA NA prediction 0.499062693586774 Functional Gain - UNC50 ENSG00000115446 CDS Human protein_coding chr2:99226259 chr2:99226258 nonsynonymous SNV 0.717 0 20 hm7G_associated_SNPs_21214 0 0 1 0 1 UNC50 chr2:99226219 3'AG 99226219 Downstream 40bp 19712 chr15 76448971 76448971 1 + G T GBM 76448972 + 76448952 76448992 41 TGGCTGAAGCCGTGCTGTGGGAAGAGAGCAGCCGTGTGGCA TGGCTGAAGCCGTGCTGTGTGAAGAGAGCAGCCGTGTGGCA < 41bp 0.628273910256016 0.877794904283084 NA NA prediction 0.499041988054136 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76448972 chr15:76448971 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21215 0 0 0 0 2 TMEM266 chr15:76448945 3'AG 76448945 Downstream 27bp 19713 chr15 76448971 76448971 1 + G T GBM 76448972 + 76448952 76448992 41 TGGCTGAAGCCGTGCTGTGGGAAGAGAGCAGCCGTGTGGCA TGGCTGAAGCCGTGCTGTGTGAAGAGAGCAGCCGTGTGGCA < 41bp 0.628273910256016 0.877794904283084 NA NA prediction 0.499041988054136 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76448972 chr15:76448971 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21215 0 0 0 0 2 TMEM266 chr15:76448993 5'GT 76448993 Upstream 23bp 19714 chr21 45709652 45709652 1 + G T LUAD 45709653 + 45709633 45709673 41 GCAGTGGCCCGAAGCCTCTGGTTCGAGCCAAGGGAGCCCAG GCAGTGGCCCGAAGCCTCTTGTTCGAGCCAAGGGAGCCCAG < 41bp 0.638264599427882 0.887775822118591 NA NA prediction 0.499022445381419 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45709653 chr21:45709652 synonymous SNV . 0 20 hm7G_associated_SNPs_21216 0 0 0 0 1 AIRE chr21:45709685 5'GT 45709685 Upstream 34bp 19715 chr7 143013439 143013439 1 + G T COAD 143013440 + 143013420 143013460 41 AATGGGGGCCTCCAGCACAGGCTCCGGAAGGATGCAGGCCC AATGGGGGCCTCCAGCACATGCTCCGGAAGGATGCAGGCCC < 41bp 0.626586734187662 0.876088454635055 NA NA prediction 0.499003440894786 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143013440 chr7:143013439 nonsynonymous SNV 0.779 3 20 hm7G_associated_SNPs_21217 0 0 0 0 1 CLCN1 chr7:143013485 5'GT 143013485 Upstream 47bp 19716 chrX 19371229 19371229 1 + G T COAD 19371230 + 19371210 19371250 41 AGGTTGTGCTAAAGGGAAAGGAGGATCGATGCACATGTATG AGGTTGTGCTAAAGGGAAATGAGGATCGATGCACATGTATG < 41bp 0.622770259973364 0.8722606999859 NA NA prediction 0.498980880025071 Functional Gain - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19371230 chrX:19371229 stopgain 0.999 1 20 hm7G_associated_SNPs_21218 0 0 1 0 2 PDHA1 chrX:19371200 3'AG 19371200 Downstream 30bp 19717 chrX 19371229 19371229 1 + G T COAD 19371230 + 19371210 19371250 41 AGGTTGTGCTAAAGGGAAAGGAGGATCGATGCACATGTATG AGGTTGTGCTAAAGGGAAATGAGGATCGATGCACATGTATG < 41bp 0.622770259973364 0.8722606999859 NA NA prediction 0.498980880025071 Functional Gain - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19371230 chrX:19371229 stopgain 0.999 1 20 hm7G_associated_SNPs_21218 0 0 1 0 2 PDHA1 chrX:19371291 5'GT 19371291 Upstream 63bp 19718 chr12 72338373 72338373 1 + G T LGG 72338374 + 72338354 72338394 41 TGTTTTCAACAGAGCTAGAGGATGTGCCCTGGTTCCCTCGG TGTTTTCAACAGAGCTAGATGATGTGCCCTGGTTCCCTCGG < 41bp 0.611964644102891 0.861449958038108 NA NA prediction 0.498970627870434 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338374 chr12:72338373 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_21219 0 0 0 0 2 TPH2 chr12:72338366 3'AG 72338366 Downstream 8bp 19719 chr12 72338373 72338373 1 + G T LGG 72338374 + 72338354 72338394 41 TGTTTTCAACAGAGCTAGAGGATGTGCCCTGGTTCCCTCGG TGTTTTCAACAGAGCTAGATGATGTGCCCTGGTTCCCTCGG < 41bp 0.611964644102891 0.861449958038108 NA NA prediction 0.498970627870434 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338374 chr12:72338373 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_21219 0 0 0 0 2 TPH2 chr12:72338466 5'GT 72338466 Upstream 94bp 19720 chr5 139903746 139903746 1 + G T UCEC 139903747 + 139903727 139903767 41 AGGAACAGAAAAGGAAACAGGAAGAAGATGAAGAAAACAAA AGGAACAGAAAAGGAAACATGAAGAAGATGAAGAAAACAAA < 41bp 0.607128643455328 0.856589352960583 NA NA prediction 0.498921419010511 Functional Gain - ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139903747 chr5:139903746 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_21221 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139903651 3'AG 139903651 Downstream 96bp 19721 chr20 33582138 33582138 1 + G T CESC 33582139 + 33582119 33582159 41 CGGCCGAGGCCAAGCGCCAGGAACTGGAGGAGACGCACGTC CGGCCGAGGCCAAGCGCCATGAACTGGAGGAGACGCACGTC < 41bp 0.640026028855372 0.88947178322743 NA NA prediction 0.498891508744115 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33582139 chr20:33582138 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_21225 0 0 0 0 1 MYH7B chr20:33582204 5'GT 33582204 Upstream 67bp 19722 chr1 220310248 220310248 1 + G T LUAD 220310249 + 220310229 220310269 41 TGATGTTGTCGTTAATGGAGGACAAGTAGGTGATTCTCTAA TGATGTTGTCGTTAATGGATGACAAGTAGGTGATTCTCTAA < 41bp 0.607300691391926 0.856737848304406 NA NA prediction 0.49887431382496 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220310249 chr1:220310248 stopgain 0.906 1 20 hm7G_associated_SNPs_21226 0 0 1 0 2 IARS2 chr1:220310151 3'AG 220310151 Downstream 98bp 19723 chr1 220310248 220310248 1 + G T LUAD 220310249 + 220310229 220310269 41 TGATGTTGTCGTTAATGGAGGACAAGTAGGTGATTCTCTAA TGATGTTGTCGTTAATGGATGACAAGTAGGTGATTCTCTAA < 41bp 0.607300691391926 0.856737848304406 NA NA prediction 0.49887431382496 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220310249 chr1:220310248 stopgain 0.906 1 20 hm7G_associated_SNPs_21226 0 0 1 0 2 IARS2 chr1:220310253 5'GT 220310253 Upstream 6bp 19724 chr7 134722222 134722222 1 + G T UCEC 134722223 + 134722203 134722243 41 GATCTTCATGGCCATAGTAGGAAAGAGAACATCTTCATGTA GATCTTCATGGCCATAGTATGAAAGAGAACATCTTCATGTA < 41bp 0.609633607822721 0.859061340626553 NA NA prediction 0.498855465607664 Functional Gain - AGBL3 ENSG00000146856 CDS Human protein_coding chr7:134722223 chr7:134722222 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_21227 0 0 0 0 1 AGBL3 chr7:134722169 3'AG 134722169 Downstream 54bp 19725 chr2 28631709 28631709 1 + G T STAD 28631710 + 28631690 28631730 41 AGTGCCGGAACCGACGCCGGGAGCTGACAGAGAAGCTGCAG AGTGCCGGAACCGACGCCGTGAGCTGACAGAGAAGCTGCAG < 41bp 0.638877031398093 0.888277710336884 NA NA prediction 0.498801357877582 Functional Gain - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28631710 chr2:28631709 synonymous SNV . 0 20 hm7G_associated_SNPs_21230 0 0 1 0 2 FOSL2 chr2:28631626 3'AG 28631626 Downstream 84bp 19726 chr2 28631709 28631709 1 + G T STAD 28631710 + 28631690 28631730 41 AGTGCCGGAACCGACGCCGGGAGCTGACAGAGAAGCTGCAG AGTGCCGGAACCGACGCCGTGAGCTGACAGAGAAGCTGCAG < 41bp 0.638877031398093 0.888277710336884 NA NA prediction 0.498801357877582 Functional Gain - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28631710 chr2:28631709 synonymous SNV . 0 20 hm7G_associated_SNPs_21230 0 0 1 0 2 FOSL2 chr2:28631733 5'GT 28631733 Upstream 25bp 19727 chr12 102036200 102036200 1 + G T LGG 102036201 + 102036181 102036221 41 GGTTCTCCCCGGTTAGGGAGGTGAAGCAGCAGGAGGAAGAA GGTTCTCCCCGGTTAGGGATGTGAAGCAGCAGGAGGAAGAA < 41bp 0.612286664883629 0.861686877566093 NA NA prediction 0.498800425364929 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102036201 chr12:102036200 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_21231 0 0 0 0 1 MYBPC1 chr12:102036197 3'AG 102036197 Downstream 4bp 19728 chr11 66583552 66583552 1 + G T UCEC 66583553 + 66583533 66583573 41 TTCCAGATGTGAGTTATCAGGTGGAATCCAGTGAGGAGGAT TTCCAGATGTGAGTTATCATGTGGAATCCAGTGAGGAGGAT < 41bp 0.42059195988669 0.749383453720245 NA NA prediction 0.49876690744049 Functional Gain - C11orf80 ENSG00000173715 CDS Human protein_coding chr11:66583553 chr11:66583552 nonsynonymous SNV 0.427 0 20 hm7G_associated_SNPs_21232 0 0 1 0 1 C11orf80 chr11:66583524 3'AG 66583524 Downstream 29bp 19729 chr2 171702018 171702018 1 + G T SKCM 171702019 + 171701999 171702039 41 TGTCCGCTTGCTGACAGGGGGCGCCATATCCAACATGTACA TGTCCGCTTGCTGACAGGGTGCGCCATATCCAACATGTACA < 41bp 0.420450962668879 0.749378318507881 NA NA prediction 0.498756637015763 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171702019 chr2:171702018 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21233 0 0 0 0 1 GAD1 chr2:171702016 3'AG 171702016 Downstream 3bp 19730 chr7 143657134 143657134 1 + G T HNSC 143657135 + 143657115 143657155 41 TCCAGTGACTGGGACACTCGGGTCTCCCTGTTTGTCCTGTT TCCAGTGACTGGGACACTCTGGTCTCCCTGTTTGTCCTGTT < 41bp 0.448951191264372 0.749359641256903 NA NA prediction 0.498719282513806 Functional Gain - OR2F1 ENSG00000213215 CDS Human lincRNA chr7:143657135 chr7:143657134 nonsynonymous SNV 0.069 1 20 hm7G_associated_SNPs_21234 0 0 0 0 1 OR2F1 chr7:143657041 3'AG 143657041 Downstream 94bp 19731 chr19 4200138 4200138 1 + G T CESC 4200139 + 4200119 4200159 41 GGAGGTGATGATAGCTCATGGCAGCAATGTCATGAGCGCGG GGAGGTGATGATAGCTCATTGCAGCAATGTCATGAGCGCGG < 41bp 0.399734688205566 0.749356219499731 NA NA prediction 0.498712438999462 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4200139 chr19:4200138 nonsynonymous SNV 0.793 4 20 hm7G_associated_SNPs_21235 0 0 0 0 2 ANKRD24 chr19:4200080 3'AG 4200080 Downstream 59bp 19732 chr19 4200138 4200138 1 + G T CESC 4200139 + 4200119 4200159 41 GGAGGTGATGATAGCTCATGGCAGCAATGTCATGAGCGCGG GGAGGTGATGATAGCTCATTGCAGCAATGTCATGAGCGCGG < 41bp 0.399734688205566 0.749356219499731 NA NA prediction 0.498712438999462 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4200139 chr19:4200138 nonsynonymous SNV 0.793 4 20 hm7G_associated_SNPs_21235 0 0 0 0 2 ANKRD24 chr19:4200168 5'GT 4200168 Upstream 31bp 19733 chr3 37070286 37070286 1 + G T ESCA 37070287 + 37070267 37070307 41 CATTGCAGAAAGAGACATCGGGAAGATTCTGATGTGGAAAT CATTGCAGAAAGAGACATCTGGAAGATTCTGATGTGGAAAT < 41bp 0.584132991788086 0.833476764367166 NA NA prediction 0.49868754515816 Functional Gain - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37070287 chr3:37070286 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_21236 0 0 1 0 1 MLH1 chr3:37070275 3'AG 37070275 Downstream 12bp 19734 chr5 156670710 156670710 1 + G T LUAD 156670711 + 156670691 156670731 41 ATTTGGGTTGGTGCATCTGGGCTACTGGCTCAACAAGGACA ATTTGGGTTGGTGCATCTGTGCTACTGGCTCAACAAGGACA < 41bp 0.629539590557361 0.87887875886643 NA NA prediction 0.498678336618138 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156670711 chr5:156670710 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_21237 0 0 0 0 2 ITK chr5:156670633 3'AG 156670633 Downstream 78bp 19735 chr5 156670710 156670710 1 + G T LUAD 156670711 + 156670691 156670731 41 ATTTGGGTTGGTGCATCTGGGCTACTGGCTCAACAAGGACA ATTTGGGTTGGTGCATCTGTGCTACTGGCTCAACAAGGACA < 41bp 0.629539590557361 0.87887875886643 NA NA prediction 0.498678336618138 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156670711 chr5:156670710 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_21237 0 0 0 0 2 ITK chr5:156670804 5'GT 156670804 Upstream 95bp 19736 chr18 9886186 9886186 1 + G T COAD 9886187 + 9886167 9886207 41 CAGGAATGGATGTAGACAAGGAACTAGGAATGGAAAGTGTT CAGGAATGGATGTAGACAATGAACTAGGAATGGAAAGTGTT < 41bp 0.441822586890995 0.749335240342608 NA NA prediction 0.498670480685216 Functional Gain - TXNDC2 ENSG00000168454 CDS Human protein_coding chr18:9886187 chr18:9886186 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_21238 0 0 0 0 1 TXNDC2 chr18:9886280 5'GT 9886280 Upstream 95bp 19737 chr12 102069174 102069174 1 + G T UCEC 102069175 + 102069155 102069195 41 TGGAAATGCTGCTATCACAGGCTATACCATTCAGAAGGCTG TGGAAATGCTGCTATCACATGCTATACCATTCAGAAGGCTG < 41bp 0.424907725530074 0.749334469578357 NA NA prediction 0.498668939156715 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102069175 chr12:102069174 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_21239 0 0 0 0 1 MYBPC1 chr12:102069209 5'GT 102069209 Upstream 36bp 19738 chr2 220473351 220473351 1 + G T PRAD 220473352 + 220473332 220473372 41 GTCCCCTGGAGGGGCCTGAGGGCGTACGGGGCAGGGAATGC GTCCCCTGGAGGGGCCTGATGGCGTACGGGGCAGGGAATGC < 41bp 0.638414373748882 0.88774810035415 NA NA prediction 0.498667453210536 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220473352 chr2:220473351 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_21240 0 0 1 0 1 STK11IP chr2:220473305 3'AG 220473305 Downstream 47bp 19739 chr18 8718598 8718598 1 + G T UCEC 8718599 + 8718579 8718619 41 GCCTGAAAGTGGCTGAGACGGGTCAGGTGGATGGTGAGCTT GCCTGAAAGTGGCTGAGACTGGTCAGGTGGATGGTGAGCTT < 41bp 0.636038172185784 0.885366947740228 NA NA prediction 0.498657551108889 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8718599 chr18:8718598 synonymous SNV . 0 20 hm7G_associated_SNPs_21241 0 0 1 0 1 MTCL1 chr18:8718646 5'GT 8718646 Upstream 49bp 19740 chr10 86017689 86017689 1 + G T LUSC 86017690 + 86017670 86017710 41 AGGACGCTGCTGCTCGGCTGGGGCCCCTATGCCATCCTGTA AGGACGCTGCTGCTCGGCTTGGGCCCCTATGCCATCCTGTA < 41bp 0.408756505765093 0.749328006965665 NA NA prediction 0.498656013931331 Functional Gain - RGR ENSG00000148604 CDS Human protein_coding chr10:86017690 chr10:86017689 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_21242 0 0 0 0 2 RGR chr10:86017649 3'AG 86017649 Downstream 41bp 19741 chr10 86017689 86017689 1 + G T LUSC 86017690 + 86017670 86017710 41 AGGACGCTGCTGCTCGGCTGGGGCCCCTATGCCATCCTGTA AGGACGCTGCTGCTCGGCTTGGGCCCCTATGCCATCCTGTA < 41bp 0.408756505765093 0.749328006965665 NA NA prediction 0.498656013931331 Functional Gain - RGR ENSG00000148604 CDS Human protein_coding chr10:86017690 chr10:86017689 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_21242 0 0 0 0 2 RGR chr10:86017762 5'GT 86017762 Upstream 74bp 19742 chr16 8868783 8868783 1 + G T LUAD 8868784 + 8868764 8868804 41 GGTGGACGAGGTCCAGACCGGAGGAGGCTGCACGGGCAAGT GGTGGACGAGGTCCAGACCTGAGGAGGCTGCACGGGCAAGT < 41bp 0.633399069422576 0.882657246390694 NA NA prediction 0.498516353936235 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8868784 chr16:8868783 stopgain 0.631 1 20 hm7G_associated_SNPs_21247 0 0 1 0 1 ABAT chr16:8868747 3'AG 8868747 Downstream 37bp 19743 chr2 220414033 220414033 1 + G T LAML 220414034 + 220414014 220414054 41 GACCCTGCTTATCGGCGCAGGCCAGTGCCCATCAAACGCTT GACCCTGCTTATCGGCGCATGCCAGTGCCCATCAAACGCTT < 41bp 0.406481613427796 0.749238959977282 NA NA prediction 0.498477919954563 Functional Gain - TMEM198 ENSG00000188760 CDS Human protein_coding chr2:220414034 chr2:220414033 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21250 0 0 0 0 1 TMEM198 chr2:220414076 5'GT 220414076 Upstream 44bp 19744 chr1 93711674 93711674 1 + G T CESC 93711675 + 93711655 93711695 41 ATTGTAGAGAATGCAAGATGGAGATTGAAGACAAAAAGCAG ATTGTAGAGAATGCAAGATTGAGATTGAAGACAAAAAGCAG < 41bp 0.605572399931844 0.854794374002061 NA NA prediction 0.498443948140435 Functional Gain - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93711675 chr1:93711674 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21252 0 0 1 0 2 CCDC18 chr1:93711662 3'AG 93711662 Downstream 13bp 19745 chr1 93711674 93711674 1 + G T CESC 93711675 + 93711655 93711695 41 ATTGTAGAGAATGCAAGATGGAGATTGAAGACAAAAAGCAG ATTGTAGAGAATGCAAGATTGAGATTGAAGACAAAAAGCAG < 41bp 0.605572399931844 0.854794374002061 NA NA prediction 0.498443948140435 Functional Gain - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93711675 chr1:93711674 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21252 0 0 1 0 2 CCDC18 chr1:93711761 5'GT 93711761 Upstream 88bp 19746 chr20 36952396 36952396 1 + G T LUAD 36952397 + 36952377 36952417 41 TACTTCTTCAACACAGCCGGGCTTGTATACCAAGAGGCTGG TACTTCTTCAACACAGCCGTGCTTGTATACCAAGAGGCTGG < 41bp 0.626814638281361 0.876028927375832 NA NA prediction 0.498428578188942 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36952397 chr20:36952396 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_21254 0 0 0 0 1 BPI chr20:36952448 5'GT 36952448 Upstream 53bp 19747 chrX 207367 207367 1 + G T KIRC 207368 + 207348 207388 41 GTGCGGTACCTGGACCTGCGGATAGCCCACATGCTGGAGGG GTGCGGTACCTGGACCTGCTGATAGCCCACATGCTGGAGGG < 41bp 0.406024783194591 0.749204945979746 NA NA prediction 0.498409891959491 Functional Gain - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:207368 chrX:207367 nonsynonymous SNV 0.438 2 20 hm7G_associated_SNPs_21256 0 0 1 1 2 PLCXD1 chrX:207315 3'AG 207315 Downstream 53bp 19748 chrX 207367 207367 1 + G T KIRC 207368 + 207348 207388 41 GTGCGGTACCTGGACCTGCGGATAGCCCACATGCTGGAGGG GTGCGGTACCTGGACCTGCTGATAGCCCACATGCTGGAGGG < 41bp 0.406024783194591 0.749204945979746 NA NA prediction 0.498409891959491 Functional Gain - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:207368 chrX:207367 nonsynonymous SNV 0.438 2 20 hm7G_associated_SNPs_21256 0 0 1 1 2 PLCXD1 chrX:207443 5'GT 207443 Upstream 77bp 19749 chr3 148875199 148875199 1 + G T UCEC 148875200 + 148875180 148875220 41 GCATTCACCTTCTCAGTGAGGCTCATCTGTTAGTGCGAGCT GCATTCACCTTCTCAGTGATGCTCATCTGTTAGTGCGAGCT < 41bp 0.629809078386069 0.879000947648467 NA NA prediction 0.498383738524798 Functional Gain - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148875200 chr3:148875199 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21257 0 0 1 0 1 HPS3 chr3:148875137 3'AG 148875137 Downstream 63bp 19750 chr10 106037803 106037803 1 + G T UCEC 106037804 + 106037784 106037824 41 CCTGGATGATGCTTATCCAGGAAGGAAGCTGTTTCCATATG CCTGGATGATGCTTATCCATGAAGGAAGCTGTTTCCATATG < 41bp 0.625998312674589 0.875184686327592 NA NA prediction 0.498372747306007 Functional Gain - GSTO2 ENSG00000065621 CDS Human protein_coding chr10:106037804 chr10:106037803 stopgain 0.938 1 20 hm7G_associated_SNPs_21259 0 0 0 0 1 GSTO2 chr10:106037874 5'GT 106037874 Upstream 72bp 19751 chr9 111701477 111701477 1 + G T SARC 111701478 + 111701458 111701498 41 TTCCGTCTCATTACACAGGGGGCACAGTTTCTAACAGAGCT TTCCGTCTCATTACACAGGTGGCACAGTTTCTAACAGAGCT < 41bp 0.614406344459428 0.863592114629347 NA NA prediction 0.498371540339838 Functional Gain - FAM206A ENSG00000119328 CDS Human protein_coding chr9:111701478 chr9:111701477 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_21260 0 0 0 1 2 FAM206A chr9:111701476 3'AG 111701476 Downstream 2bp 19752 chr9 111701477 111701477 1 + G T SARC 111701478 + 111701458 111701498 41 TTCCGTCTCATTACACAGGGGGCACAGTTTCTAACAGAGCT TTCCGTCTCATTACACAGGTGGCACAGTTTCTAACAGAGCT < 41bp 0.614406344459428 0.863592114629347 NA NA prediction 0.498371540339838 Functional Gain - FAM206A ENSG00000119328 CDS Human protein_coding chr9:111701478 chr9:111701477 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_21260 0 0 0 1 2 FAM206A chr9:111701552 5'GT 111701552 Upstream 76bp 19753 chr1 99762351 99762351 1 + G T COAD 99762352 + 99762332 99762372 41 CAAAAGAAGAAATGGGGTCGGACTAGAGCCCAACATTAATG CAAAAGAAGAAATGGGGTCTGACTAGAGCCCAACATTAATG < 41bp 0.614586335879969 0.863769356040478 NA NA prediction 0.498366040321019 Functional Gain - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99762352 chr1:99762351 stopgain 0.762 1 20 hm7G_associated_SNPs_21261 0 0 0 0 2 PLPPR4 chr1:99762294 3'AG 99762294 Downstream 58bp 19754 chr1 99762351 99762351 1 + G T COAD 99762352 + 99762332 99762372 41 CAAAAGAAGAAATGGGGTCGGACTAGAGCCCAACATTAATG CAAAAGAAGAAATGGGGTCTGACTAGAGCCCAACATTAATG < 41bp 0.614586335879969 0.863769356040478 NA NA prediction 0.498366040321019 Functional Gain - PLPPR4 ENSG00000117600 CDS Human protein_coding chr1:99762352 chr1:99762351 stopgain 0.762 1 20 hm7G_associated_SNPs_21261 0 0 0 0 2 PLPPR4 chr1:99762423 5'GT 99762423 Upstream 73bp 19755 chr8 10532229 10532229 1 + G T UCEC 10532230 + 10532210 10532250 41 GAACAGAGAGACTCCCGGAGGAGCATCCTGCTGGACACCCT GAACAGAGAGACTCCCGGATGAGCATCCTGCTGGACACCCT < 41bp 0.417335316703406 0.749178491158543 NA NA prediction 0.498356982317086 Functional Gain - C8orf74 ENSG00000171060 CDS Human protein_coding chr8:10532230 chr8:10532229 nonsynonymous SNV 0.114 2 20 hm7G_associated_SNPs_21262 0 0 0 1 1 C8orf74 chr8:10532156 3'AG 10532156 Downstream 74bp 19756 chr10 104386970 104386970 1 + G T STAD 104386971 + 104386951 104386991 41 TTGTAGAGAAAATGTTGGAGGATTTAGAAGATTTGACTTCT TTGTAGAGAAAATGTTGGATGATTTAGAAGATTTGACTTCT < 41bp 0.615369587483385 0.864524143197533 NA NA prediction 0.498309111428295 Functional Gain - SUFU ENSG00000107882 CDS Human protein_coding chr10:104386971 chr10:104386970 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21264 0 0 1 0 2 SUFU chr10:104386932 3'AG 104386932 Downstream 39bp 19757 chr10 104386970 104386970 1 + G T STAD 104386971 + 104386951 104386991 41 TTGTAGAGAAAATGTTGGAGGATTTAGAAGATTTGACTTCT TTGTAGAGAAAATGTTGGATGATTTAGAAGATTTGACTTCT < 41bp 0.615369587483385 0.864524143197533 NA NA prediction 0.498309111428295 Functional Gain - SUFU ENSG00000107882 CDS Human protein_coding chr10:104386971 chr10:104386970 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21264 0 0 1 0 2 SUFU chr10:104387000 5'GT 104387000 Upstream 31bp 19758 chr21 43984874 43984874 1 + G T LUSC 43984875 + 43984855 43984895 41 GAAAAGGGCCTCCACCTGCGGCCTGATGCTGCTGCTCGCGG GAAAAGGGCCTCCACCTGCTGCCTGATGCTGCTGCTCGCGG < 41bp 0.401984287831222 0.749149675466302 NA NA prediction 0.498299350932604 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43984875 chr21:43984874 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_21265 0 0 0 0 2 SLC37A1 chr21:43984818 3'AG 43984818 Downstream 57bp 19759 chr21 43984874 43984874 1 + G T LUSC 43984875 + 43984855 43984895 41 GAAAAGGGCCTCCACCTGCGGCCTGATGCTGCTGCTCGCGG GAAAAGGGCCTCCACCTGCTGCCTGATGCTGCTGCTCGCGG < 41bp 0.401984287831222 0.749149675466302 NA NA prediction 0.498299350932604 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43984875 chr21:43984874 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_21265 0 0 0 0 2 SLC37A1 chr21:43984903 5'GT 43984903 Upstream 30bp 19760 chr11 119057343 119057343 1 + G T ACC 119057344 + 119057324 119057364 41 GCGCCAGGGTCTTCAGGAAGGAGACAGGATCCTGGCGGTGA GCGCCAGGGTCTTCAGGAATGAGACAGGATCCTGGCGGTGA < 41bp 0.626654613223028 0.875794570575778 NA NA prediction 0.498279914705501 Functional Gain - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119057344 chr11:119057343 stopgain 0.986 1 20 hm7G_associated_SNPs_21266 0 0 1 0 1 PDZD3 chr11:119057399 5'GT 119057399 Upstream 57bp 19761 chr17 33504141 33504141 1 + G T LUSC 33504142 + 33504122 33504162 41 TCCGGACATTGCTTTTCCTGGGGAGCGGGTAGGTGCTTGGG TCCGGACATTGCTTTTCCTTGGGAGCGGGTAGGTGCTTGGG < 41bp 0.629431882691468 0.878567629179291 NA NA prediction 0.498271492975646 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33504142 chr17:33504141 nonsynonymous SNV 0.647 4 20 hm7G_associated_SNPs_21267 0 0 0 0 1 UNC45B chr17:33504149 5'GT 33504149 Upstream 9bp 19762 chr17 6942127 6942127 1 + G T SKCM 6942128 + 6942108 6942148 41 CGTGCTGCCTGAACTAATAGGGACTAGAAGGATTTACTGTG CGTGCTGCCTGAACTAATATGGACTAGAAGGATTTACTGTG < 41bp 0.415817848598807 0.74913400406065 NA NA prediction 0.498268008121301 Functional Gain - SLC16A13 ENSG00000174327 CDS Human protein_coding chr17:6942128 chr17:6942127 nonsynonymous SNV 0.567 4 20 hm7G_associated_SNPs_21268 0 0 1 0 1 SLC16A13 chr17:6942208 5'GT 6942208 Upstream 82bp 19763 chr7 37934093 37934093 1 + G T UCEC 37934094 + 37934074 37934114 41 TCCTGAAGATAGTTAAGGAGGCTGGATTTGATCTGACACAG TCCTGAAGATAGTTAAGGATGCTGGATTTGATCTGACACAG < 41bp 0.612392934668593 0.861503138096629 NA NA prediction 0.498220406856071 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37934094 chr7:37934093 nonsynonymous SNV 0.071 0 20 hm7G_associated_SNPs_21270 0 0 0 0 1 NME8 chr7:37934068 3'AG 37934068 Downstream 26bp 19764 chr16 25235883 25235883 1 + G T LUAD 25235884 + 25235864 25235904 41 TCGGCTTTGCCGTCACCGTGGATATCCTGGCTGGGTGAGTG TCGGCTTTGCCGTCACCGTTGATATCCTGGCTGGGTGAGTG < 41bp 0.629648824311109 0.878716556462065 NA NA prediction 0.498135464301911 Functional Gain - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25235884 chr16:25235883 synonymous SNV . 0 20 hm7G_associated_SNPs_21274 0 0 0 0 1 AQP8 chr16:25235897 5'GT 25235897 Upstream 15bp 19765 chr1 249210873 249210873 1 + G T LUAD 249210874 + 249210854 249210894 41 TTGAGGTTCTGAATGCTATGGAGGAGGAAGAGTCCAACAAC TTGAGGTTCTGAATGCTATTGAGGAGGAAGAGTCCAACAAC < 41bp 0.614554961567834 0.863605164074983 NA NA prediction 0.498100405014296 Functional Gain - PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210874 chr1:249210873 nonsynonymous SNV 0.972 1 20 hm7G_associated_SNPs_21276 0 0 1 0 1 PGBD2 chr1:249210801 3'AG 249210801 Downstream 73bp 19766 chr1 180153057 180153057 1 + G T UCEC 180153058 + 180153038 180153078 41 TGTGCCCTCACAGGCTCATGGAATCCAGGTCCTTCTATACC TGTGCCCTCACAGGCTCATTGAATCCAGGTCCTTCTATACC < 41bp 0.406268025363203 0.749032640246157 NA NA prediction 0.498065280492315 Functional Gain - QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180153058 chr1:180153057 nonsynonymous SNV 0.219 0 20 hm7G_associated_SNPs_21279 0 0 1 0 1 QSOX1 chr1:180153051 3'AG 180153051 Downstream 7bp 19767 chr12 4855345 4855345 1 + G T LUAD 4855346 + 4855326 4855366 41 GGCATCCTGGCTGCTAACAGGCACTTCCTGGGAGAGATCGG GGCATCCTGGCTGCTAACATGCACTTCCTGGGAGAGATCGG < 41bp 0.631869301297551 0.8808750773752 NA NA prediction 0.498011552155297 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4855346 chr12:4855345 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_21281 0 0 0 0 1 GALNT8 chr12:4855310 3'AG 4855310 Downstream 36bp 19768 chr12 125509630 125509630 1 + G T UCEC 125509631 + 125509611 125509651 41 GTCGTCCTCCTGGCCTACTGGTTCTTGTCCCTGACCCTGGG GTCGTCCTCCTGGCCTACTTGTTCTTGTCCCTGACCCTGGG < 41bp 0.42824007611314 0.749001847634829 NA NA prediction 0.498003695269657 Functional Gain - BRI3BP ENSG00000184992 CDS Human protein_coding chr12:125509631 chr12:125509630 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_21282 0 0 1 0 1 BRI3BP chr12:125509537 3'AG 125509537 Downstream 94bp 19769 chr9 139250932 139250932 1 + G T OV 139250933 + 139250913 139250953 41 ATCACCCACAGCAATGCAGGGCACCTCCGAGGCCACGGCGA ATCACCCACAGCAATGCAGTGCACCTCCGAGGCCACGGCGA < 41bp 0.633891105092104 0.882852784285792 NA NA prediction 0.497923358387376 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139250933 chr9:139250932 nonsynonymous SNV 0.001 4 20 hm7G_associated_SNPs_21284 0 0 0 0 1 GPSM1 chr9:139251002 5'GT 139251002 Upstream 71bp 19770 chr10 72291068 72291068 1 + G T THCA 72291069 + 72291049 72291089 41 TGTGTCATCTTCTGTGTGCGGGAGGAACCTGTGCTTTTCCT TGTGTCATCTTCTGTGTGCTGGAGGAACCTGTGCTTTTCCT < 41bp 0.410412191926837 0.748946583326255 NA NA prediction 0.497893166652509 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72291069 chr10:72291068 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21285 0 0 1 0 1 PALD1 chr10:72291046 3'AG 72291046 Downstream 23bp 19771 chr5 74893763 74893763 1 + G T CESC 74893764 + 74893744 74893784 41 TCCTTTTCATTCTAGGCCAGGATTGATGACAAAGTACTCAA TCCTTTTCATTCTAGGCCATGATTGATGACAAAGTACTCAA < 41bp 0.562701909978614 0.811646631184389 NA NA prediction 0.49788944241155 Functional Gain - POLK ENSG00000122008 CDS Human protein_coding chr5:74893764 chr5:74893763 stopgain 0.790 0 20 hm7G_associated_SNPs_21286 0 0 1 0 1 POLK chr5:74893759 3'AG 74893759 Downstream 5bp 19772 chr22 25625531 25625531 1 + G T LUAD 25625532 + 25625512 25625552 41 AGAAGGTGTCATCTGTGCGGGTGCAGAGTGGCACGTAAGTG AGAAGGTGTCATCTGTGCGTGTGCAGAGTGGCACGTAAGTG < 41bp 0.61839478414055 0.867331195714423 NA NA prediction 0.497872823147745 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25625532 chr22:25625531 synonymous SNV . 0 20 hm7G_associated_SNPs_21288 0 0 0 0 1 CRYBB2 chr22:25625545 5'GT 25625545 Upstream 15bp 19773 chr8 102631815 102631815 1 + G T UCEC 102631816 + 102631796 102631836 41 AGATTTCTCCTCCCAAAAAGGGGTGAAAGGACTTCCTTTGA AGATTTCTCCTCCCAAAAATGGGTGAAAGGACTTCCTTTGA < 41bp 0.426404084945573 0.748933636414202 NA NA prediction 0.497867272828405 Functional Gain - GRHL2 ENSG00000083307 CDS Human protein_coding chr8:102631816 chr8:102631815 nonsynonymous SNV 0.961 4 20 hm7G_associated_SNPs_21289 0 0 0 0 1 GRHL2 chr8:102631767 3'AG 102631767 Downstream 49bp 19774 chrX 153698494 153698494 1 + G T UCEC 153698495 + 153698475 153698515 41 TCCGAGATCTACCTGACACGGCTGCTGGCCACCAAGGTATG TCCGAGATCTACCTGACACTGCTGCTGGCCACCAAGGTATG < 41bp 0.412346143284488 0.748911572916301 NA NA prediction 0.497823145832601 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153698495 chrX:153698494 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_21291 0 0 1 0 1 PLXNA3 chrX:153698510 5'GT 153698510 Upstream 17bp 19775 chr16 66997783 66997783 1 + G T UCEC 66997784 + 66997764 66997804 41 ATCAGCTCTGGCTGCCTATGGGGATGTGGTCGTGGTTACAG ATCAGCTCTGGCTGCCTATTGGGATGTGGTCGTGGTTACAG < 41bp 0.395281912434847 0.748900178883429 NA NA prediction 0.497800357766859 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997784 chr16:66997783 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_21292 0 0 0 0 2 CES3 chr16:66997705 3'AG 66997705 Downstream 79bp 19776 chr16 66997783 66997783 1 + G T UCEC 66997784 + 66997764 66997804 41 ATCAGCTCTGGCTGCCTATGGGGATGTGGTCGTGGTTACAG ATCAGCTCTGGCTGCCTATTGGGATGTGGTCGTGGTTACAG < 41bp 0.395281912434847 0.748900178883429 NA NA prediction 0.497800357766859 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997784 chr16:66997783 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_21292 0 0 0 0 2 CES3 chr16:66997838 5'GT 66997838 Upstream 56bp 19777 chr5 112870066 112870066 1 + G T COAD 112870067 + 112870047 112870087 41 GCTTCGTACATTGATGGCAGGAGATAGTACGTTGTCGACTG GCTTCGTACATTGATGGCATGAGATAGTACGTTGTCGACTG < 41bp 0.426861932728218 0.748892511603146 NA NA prediction 0.497785023206292 Functional Gain - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112870067 chr5:112870066 stopgain 1.000 1 20 hm7G_associated_SNPs_21293 0 0 1 0 1 YTHDC2 chr5:112870104 5'GT 112870104 Upstream 39bp 19778 chr2 37000973 37000973 1 + G T LUAD 37000974 + 37000954 37000994 41 TACACAAGCAGCCAAAACAGGCCCAGAGCTGATCCAGGTAA TACACAAGCAGCCAAAACATGCCCAGAGCTGATCCAGGTAA < 41bp 0.420619179346368 0.748885739876838 NA NA prediction 0.497771479753677 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:37000974 chr2:37000973 nonsynonymous SNV 0.134 0 20 hm7G_associated_SNPs_21295 0 0 0 0 1 VIT chr2:37000934 3'AG 37000934 Downstream 40bp 19779 chr10 72493660 72493660 1 + G T UCEC 72493661 + 72493641 72493681 41 GCTCGGCATGGAGCATGACGGTCAGGGGAATGGCTGTGCAG GCTCGGCATGGAGCATGACTGTCAGGGGAATGGCTGTGCAG < 41bp 0.408017727524708 0.748880863077046 NA NA prediction 0.497761726154093 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72493661 chr10:72493660 nonsynonymous SNV 0.836 5 20 hm7G_associated_SNPs_21297 0 0 1 0 1 ADAMTS14 chr10:72493641 3'AG 72493641 Downstream 20bp 19780 chr9 71998606 71998606 1 + G T GBM 71998607 + 71998587 71998627 41 GAGCTCGAATCAAAGGTGTGGAAGTGTTCTGTCCTCTGGAT GAGCTCGAATCAAAGGTGTTGAAGTGTTCTGTCCTCTGGAT < 41bp 0.407571073227725 0.748879193323316 NA NA prediction 0.497758386646632 Functional Gain - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:71998607 chr9:71998606 synonymous SNV . 0 20 hm7G_associated_SNPs_21299 0 0 0 0 2 FAM189A2 chr9:71998546 3'AG 71998546 Downstream 61bp 19781 chr9 71998606 71998606 1 + G T GBM 71998607 + 71998587 71998627 41 GAGCTCGAATCAAAGGTGTGGAAGTGTTCTGTCCTCTGGAT GAGCTCGAATCAAAGGTGTTGAAGTGTTCTGTCCTCTGGAT < 41bp 0.407571073227725 0.748879193323316 NA NA prediction 0.497758386646632 Functional Gain - FAM189A2 ENSG00000135063 CDS Human protein_coding chr9:71998607 chr9:71998606 synonymous SNV . 0 20 hm7G_associated_SNPs_21299 0 0 0 0 2 FAM189A2 chr9:71998675 5'GT 71998675 Upstream 70bp 19782 chr6 71562245 71562245 1 + G T LUAD 71562246 + 71562226 71562266 41 ATCTATATTCTTTTCAGATGGCCCTGCTGTGGCACCAGTGA ATCTATATTCTTTTCAGATTGCCCTGCTGTGGCACCAGTGA < 41bp 0.419005908014901 0.748877238093588 NA NA prediction 0.497754476187175 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71562246 chr6:71562245 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21300 0 0 1 0 1 SMAP1 chr6:71562243 3'AG 71562243 Downstream 3bp 19783 chr1 52871473 52871473 1 + G T UCEC 52871474 + 52871454 52871494 41 TTCAAATTCAACCCGAGAAGGATATCATTGTAGAGTTTATC TTCAAATTCAACCCGAGAATGATATCATTGTAGAGTTTATC < 41bp 0.616281850226204 0.865152055101482 NA NA prediction 0.497740409750557 Functional Gain - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52871474 chr1:52871473 nonsynonymous SNV 0.978 3 20 hm7G_associated_SNPs_21301 0 0 0 0 1 PRPF38A chr1:52871511 5'GT 52871511 Upstream 39bp 19784 chr15 84245427 84245427 1 + G T LUAD 84245428 + 84245408 84245448 41 ACGAAGAAGTCAGACAAGCGGTAGAAAAATTTGAAGAGTCA ACGAAGAAGTCAGACAAGCTGTAGAAAAATTTGAAGAGTCA < 41bp 0.611026065872334 0.859866516174888 NA NA prediction 0.497680900605108 Functional Gain - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84245428 chr15:84245427 synonymous SNV . 0 20 hm7G_associated_SNPs_21303 0 0 1 0 3 SH3GL3 chr15:84245335 3'AG 84245335 Downstream 93bp 19785 chr15 84245427 84245427 1 + G T LUAD 84245428 + 84245408 84245448 41 ACGAAGAAGTCAGACAAGCGGTAGAAAAATTTGAAGAGTCA ACGAAGAAGTCAGACAAGCTGTAGAAAAATTTGAAGAGTCA < 41bp 0.611026065872334 0.859866516174888 NA NA prediction 0.497680900605108 Functional Gain - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84245428 chr15:84245427 synonymous SNV . 0 20 hm7G_associated_SNPs_21303 0 0 1 0 3 SH3GL3 chr15:84245493 5'GT 84245493 Upstream 67bp 19786 chr15 84245427 84245427 1 + G T LUAD 84245428 + 84245408 84245448 41 ACGAAGAAGTCAGACAAGCGGTAGAAAAATTTGAAGAGTCA ACGAAGAAGTCAGACAAGCTGTAGAAAAATTTGAAGAGTCA < 41bp 0.611026065872334 0.859866516174888 NA NA prediction 0.497680900605108 Functional Gain - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84245428 chr15:84245427 synonymous SNV . 0 20 hm7G_associated_SNPs_21303 0 0 1 0 3 SH3GL3 chr15:84245497 5'GT 84245497 Upstream 71bp 19787 chr2 63280181 63280181 1 + G T LUSC 63280182 + 63280162 63280202 41 AACGGGCTGGGCCTGGCCGGGCCCGCCATGGACCTCCTGCA AACGGGCTGGGCCTGGCCGTGCCCGCCATGGACCTCCTGCA < 41bp 0.601463071943043 0.850294634606246 NA NA prediction 0.497663125326405 Functional Gain - OTX1 ENSG00000115507 CDS Human protein_coding chr2:63280182 chr2:63280181 nonsynonymous SNV 0.350 3 20 hm7G_associated_SNPs_21304 0 0 0 0 1 OTX1 chr2:63280222 5'GT 63280222 Upstream 42bp 19788 chr2 48701891 48701891 1 + G T UCEC 48701892 + 48701872 48701912 41 GGAATCTAGAGCTGTCCCAGGACATGAAAAAAATGACAGCT GGAATCTAGAGCTGTCCCATGACATGAAAAAAATGACAGCT < 41bp 0.629575506154855 0.878392024691551 NA NA prediction 0.49763303707339 Functional Gain - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48701892 chr2:48701891 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21305 0 0 1 0 2 PPP1R21 chr2:48701822 3'AG 48701822 Downstream 70bp 19789 chr2 48701891 48701891 1 + G T UCEC 48701892 + 48701872 48701912 41 GGAATCTAGAGCTGTCCCAGGACATGAAAAAAATGACAGCT GGAATCTAGAGCTGTCCCATGACATGAAAAAAATGACAGCT < 41bp 0.629575506154855 0.878392024691551 NA NA prediction 0.49763303707339 Functional Gain - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48701892 chr2:48701891 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21305 0 0 1 0 2 PPP1R21 chr2:48701958 5'GT 48701958 Upstream 68bp 19790 chr6 107956606 107956606 1 + G T LUAD 107956607 + 107956587 107956627 41 TCGCCCATGCTCAGCGCCGGGCCTGAGGACCTGGAGCCGCC TCGCCCATGCTCAGCGCCGTGCCTGAGGACCTGGAGCCGCC < 41bp 0.420832105476975 0.748790492376517 NA NA prediction 0.497580984753034 Functional Gain - SOBP ENSG00000112320 CDS Human protein_coding chr6:107956607 chr6:107956606 nonsynonymous SNV 0.932 2 20 hm7G_associated_SNPs_21307 0 0 0 0 1 SOBP chr6:107956673 5'GT 107956673 Upstream 68bp 19791 chr2 220505671 220505671 1 + G T LUSC 220505672 + 220505652 220505692 41 CCCCGGCTCTTCCAGGACAGGGAGCTGCAGGCGGTAAGGGG CCCCGGCTCTTCCAGGACATGGAGCTGCAGGCGGTAAGGGG < 41bp 0.632497763044192 0.881286054136044 NA NA prediction 0.497576582183705 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505672 chr2:220505671 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21308 0 0 0 0 1 SLC4A3 chr2:220505684 5'GT 220505684 Upstream 14bp 19792 chr7 129122721 129122721 1 + G T UCEC 129122722 + 129122702 129122742 41 CGGCACCAATCTTAAAGCGGGCCCTCAAGGTCAAACAGGCC CGGCACCAATCTTAAAGCGTGCCCTCAAGGTCAAACAGGCC < 41bp 0.628844475114252 0.877626815207992 NA NA prediction 0.497564680187479 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129122722 chr7:129122721 synonymous SNV . 0 20 hm7G_associated_SNPs_21309 0 0 0 0 1 STRIP2 chr7:129122683 3'AG 129122683 Downstream 39bp 19793 chr11 126142894 126142894 1 + G T SKCM 126142895 + 126142875 126142915 41 CTCCACTGGGCTCTCAGTAGGTGGGATTTGTCAGCAGTTCT CTCCACTGGGCTCTCAGTATGTGGGATTTGTCAGCAGTTCT < 41bp 0.505890323065989 0.754672470904592 NA NA prediction 0.497564295677207 Functional Gain - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126142895 chr11:126142894 nonsynonymous SNV 0.020 5 20 hm7G_associated_SNPs_21310 0 0 1 2 2 FOXRED1 chr11:126142864 3'AG 126142864 Downstream 31bp 19794 chr11 126142894 126142894 1 + G T SKCM 126142895 + 126142875 126142915 41 CTCCACTGGGCTCTCAGTAGGTGGGATTTGTCAGCAGTTCT CTCCACTGGGCTCTCAGTATGTGGGATTTGTCAGCAGTTCT < 41bp 0.505890323065989 0.754672470904592 NA NA prediction 0.497564295677207 Functional Gain - FOXRED1 ENSG00000110074 CDS Human protein_coding chr11:126142895 chr11:126142894 nonsynonymous SNV 0.020 5 20 hm7G_associated_SNPs_21310 0 0 1 2 2 FOXRED1 chr11:126142974 5'GT 126142974 Upstream 81bp 19795 chr12 48538839 48538839 1 + G T UCEC 48538840 + 48538820 48538860 41 AGCCCAACCCCATTTGATAGGAATTTTGCCACTAAGATGGG AGCCCAACCCCATTTGATATGAATTTTGCCACTAAGATGGG < 41bp 0.414195574635902 0.74877779783416 NA NA prediction 0.497555595668319 Functional Gain - PFKM ENSG00000152556 CDS Human protein_coding chr12:48538840 chr12:48538839 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21311 0 0 1 0 1 PFKM chr12:48538913 5'GT 48538913 Upstream 75bp 19796 chr14 89337909 89337909 1 + G T LUAD 89337910 + 89337890 89337930 41 AAGGCGGCTGCTGCAGATGGGCATTTATAACGGCCAGCTTT AAGGCGGCTGCTGCAGATGTGCATTTATAACGGCCAGCTTT < 41bp 0.619951814121478 0.868699691909835 NA NA prediction 0.497495755576713 Functional Gain - TTC8 ENSG00000165533 CDS Human protein_coding chr14:89337910 chr14:89337909 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_21312 0 0 0 0 1 TTC8 chr14:89337893 3'AG 89337893 Downstream 17bp 19797 chr8 54866827 54866827 1 + G T HNSC 54866828 + 54866808 54866848 41 ATTATTGAAGAGAAAGCAAGGATAATCTATGAAGACTACAT ATTATTGAAGAGAAAGCAATGATAATCTATGAAGACTACAT < 41bp 0.612715294072019 0.86144676979031 NA NA prediction 0.497462951436582 Functional Gain - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54866828 chr8:54866827 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_21315 0 0 0 0 1 RGS20 chr8:54866870 5'GT 54866870 Upstream 44bp 19798 chr16 8870254 8870254 1 + G T LUAD 8870255 + 8870235 8870275 41 CGTCCAAGAACCTGTTGCTGGCTGAGGTCATCAACATCATC CGTCCAAGAACCTGTTGCTTGCTGAGGTCATCAACATCATC < 41bp 0.40588077948285 0.748723941984544 NA NA prediction 0.497447883969088 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8870255 chr16:8870254 synonymous SNV . 0 20 hm7G_associated_SNPs_21316 0 0 1 0 2 ABAT chr16:8870201 3'AG 8870201 Downstream 54bp 19799 chr16 8870254 8870254 1 + G T LUAD 8870255 + 8870235 8870275 41 CGTCCAAGAACCTGTTGCTGGCTGAGGTCATCAACATCATC CGTCCAAGAACCTGTTGCTTGCTGAGGTCATCAACATCATC < 41bp 0.40588077948285 0.748723941984544 NA NA prediction 0.497447883969088 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8870255 chr16:8870254 synonymous SNV . 0 20 hm7G_associated_SNPs_21316 0 0 1 0 2 ABAT chr16:8870347 5'GT 8870347 Upstream 94bp 19800 chr1 44436297 44436297 1 + G T SKCM 44436298 + 44436278 44436318 41 AGTTCCCTGACCAGCTATTGGGAGATGCTGTGGCTGTGGCT AGTTCCCTGACCAGCTATTTGGAGATGCTGTGGCTGTGGCT < 41bp 0.639500882238836 0.888212102654034 NA NA prediction 0.497422440830396 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44436298 chr1:44436297 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_21318 0 0 1 0 2 DPH2 chr1:44436268 3'AG 44436268 Downstream 30bp 19801 chr1 44436297 44436297 1 + G T SKCM 44436298 + 44436278 44436318 41 AGTTCCCTGACCAGCTATTGGGAGATGCTGTGGCTGTGGCT AGTTCCCTGACCAGCTATTTGGAGATGCTGTGGCTGTGGCT < 41bp 0.639500882238836 0.888212102654034 NA NA prediction 0.497422440830396 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44436298 chr1:44436297 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_21318 0 0 1 0 2 DPH2 chr1:44436380 5'GT 44436380 Upstream 84bp 19802 chr5 131931469 131931469 1 + G T HNSC 131931470 + 131931450 131931490 41 CTAAAAAAAAAGGAAAAGCGGCGTGATGAAATGCTGGGACT CTAAAAAAAAAGGAAAAGCTGCGTGATGAAATGCTGGGACT < 41bp 0.621507107690735 0.870217386830608 NA NA prediction 0.497420558279744 Functional Gain - RAD50 ENSG00000113522 CDS Human protein_coding chr5:131931470 chr5:131931469 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_21320 1 0 0 0 1 RAD50 chr5:131931502 5'GT 131931502 Upstream 34bp 19803 chr11 7618823 7618823 1 + G T UCEC 7618824 + 7618804 7618844 41 CAGACCAAGTAGAAGCCCAGGGAGAAAAGATTCGAGACCTG CAGACCAAGTAGAAGCCCATGGAGAAAAGATTCGAGACCTG < 41bp 0.407067869327128 0.748705544138953 NA NA prediction 0.497411088277906 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7618824 chr11:7618823 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21322 0 0 0 0 2 PPFIBP2 chr11:7618791 3'AG 7618791 Downstream 33bp 19804 chr11 7618823 7618823 1 + G T UCEC 7618824 + 7618804 7618844 41 CAGACCAAGTAGAAGCCCAGGGAGAAAAGATTCGAGACCTG CAGACCAAGTAGAAGCCCATGGAGAAAAGATTCGAGACCTG < 41bp 0.407067869327128 0.748705544138953 NA NA prediction 0.497411088277906 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7618824 chr11:7618823 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21322 0 0 0 0 2 PPFIBP2 chr11:7618904 5'GT 7618904 Upstream 82bp 19805 chr9 128103496 128103496 1 + G T UCEC 128103497 + 128103477 128103517 41 GATGATGAGAAATCAGACAGGAACAGACCTTGGTGGAGAAA GATGATGAGAAATCAGACATGAACAGACCTTGGTGGAGAAA < 41bp 0.619541172578301 0.868226274955996 NA NA prediction 0.497370204755389 Functional Gain - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128103497 chr9:128103496 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21323 0 0 1 0 2 GAPVD1 chr9:128103456 3'AG 128103456 Downstream 41bp 19806 chr9 128103496 128103496 1 + G T UCEC 128103497 + 128103477 128103517 41 GATGATGAGAAATCAGACAGGAACAGACCTTGGTGGAGAAA GATGATGAGAAATCAGACATGAACAGACCTTGGTGGAGAAA < 41bp 0.619541172578301 0.868226274955996 NA NA prediction 0.497370204755389 Functional Gain - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128103497 chr9:128103496 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21323 0 0 1 0 2 GAPVD1 chr9:128103543 5'GT 128103543 Upstream 48bp 19807 chr12 113873217 113873217 1 + G T UCEC 113873218 + 113873198 113873238 41 GTGCTGGCAGTTGGGGGTGGGGGTCTCCTGGCCGGGGTGGT GTGCTGGCAGTTGGGGGTGTGGGTCTCCTGGCCGGGGTGGT < 41bp 0.633339370047603 0.881994689541131 NA NA prediction 0.497310638987057 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113873218 chr12:113873217 nonsynonymous SNV 0.047 5 20 hm7G_associated_SNPs_21325 0 0 1 0 1 SDSL chr12:113873134 3'AG 113873134 Downstream 84bp 19808 chr12 129028555 129028555 1 + G T UCEC 129028556 + 129028536 129028576 41 GCTCAGACCCGTGAGCCCCGGCAGTGGGGCGTCAAGCAGGA GCTCAGACCCGTGAGCCCCTGCAGTGGGGCGTCAAGCAGGA < 41bp 0.415356438645714 0.748654226463218 NA NA prediction 0.497308452926436 Functional Gain - TMEM132C ENSG00000181234 CDS Human protein_coding chr12:129028556 chr12:129028555 nonsynonymous SNV 0.810 0 20 hm7G_associated_SNPs_21326 0 0 0 0 2 TMEM132C chr12:129028502 3'AG 129028502 Downstream 54bp 19809 chr12 129028555 129028555 1 + G T UCEC 129028556 + 129028536 129028576 41 GCTCAGACCCGTGAGCCCCGGCAGTGGGGCGTCAAGCAGGA GCTCAGACCCGTGAGCCCCTGCAGTGGGGCGTCAAGCAGGA < 41bp 0.415356438645714 0.748654226463218 NA NA prediction 0.497308452926436 Functional Gain - TMEM132C ENSG00000181234 CDS Human protein_coding chr12:129028556 chr12:129028555 nonsynonymous SNV 0.810 0 20 hm7G_associated_SNPs_21326 0 0 0 0 2 TMEM132C chr12:129028648 5'GT 129028648 Upstream 94bp 19810 chr5 122506476 122506476 1 + G T UCEC 122506477 + 122506457 122506497 41 TAGTAAATGTCCCTTCAACGGTAATGGAAGCCATGTGCAGA TAGTAAATGTCCCTTCAACTGTAATGGAAGCCATGTGCAGA < 41bp 0.618234101840035 0.866861188718592 NA NA prediction 0.497254173757113 Functional Gain - PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122506477 chr5:122506476 synonymous SNV . 0 20 hm7G_associated_SNPs_21328 0 0 0 0 1 PRDM6 chr5:122506460 3'AG 122506460 Downstream 17bp 19811 chr13 26974649 26974649 1 + G T LUAD 26974650 + 26974630 26974670 41 CCTCAGAACAGGCTATGCAGGACCCCTATTTCTTAGAAGAC CCTCAGAACAGGCTATGCATGACCCCTATTTCTTAGAAGAC < 41bp 0.416032305540974 0.748623976622959 NA NA prediction 0.497247953245918 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26974650 chr13:26974649 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21329 0 0 1 0 1 CDK8 chr13:26974590 3'AG 26974590 Downstream 60bp 19812 chr1 64027499 64027499 1 + G T STAD 64027500 + 64027480 64027520 41 GGTAACTCTACACTCTATGGGCTACAATAAAGCTCTGGAGT GGTAACTCTACACTCTATGTGCTACAATAAAGCTCTGGAGT < 41bp 0.597033905092025 0.845645606014613 NA NA prediction 0.497223401845177 Functional Gain - EFCAB7 ENSG00000203965 CDS Human protein_coding chr1:64027500 chr1:64027499 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_21331 0 0 0 0 1 EFCAB7 chr1:64027528 5'GT 64027528 Upstream 30bp 19813 chr17 53844702 53844702 1 + G T COAD 53844703 + 53844683 53844723 41 TCTGTTTTTATAGAAGACTGGACTTTATGAGTATAAAGTCT TCTGTTTTTATAGAAGACTTGACTTTATGAGTATAAAGTCT < 41bp 0.6041287842299 0.852723417743508 NA NA prediction 0.497189267027215 Functional Gain - PCTP ENSG00000141179 CDS Human protein_coding chr17:53844703 chr17:53844702 stopgain 0.222 1 20 hm7G_associated_SNPs_21332 0 0 1 0 1 PCTP chr17:53844696 3'AG 53844696 Downstream 7bp 19814 chr1 156347253 156347253 1 + G T rs12567720 156347254 + 156347234 156347274 41 TCTCCACTCCTTCCACGGTGGCCACATCCATGTTGGCGTGG TCTCCACTCCTTCCACGGTTGCCACATCCATGTTGGCGTGG < 41bp 0.406971249110192 0.748585050181227 NA NA prediction 0.497170100362453 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347254 chr1:156347253 nonsynonymous SNV 0.077 2 20 hm7G_associated_SNPs_21334 0 0 1 0 1 RHBG chr1:156347278 5'GT 156347278 Upstream 26bp 19815 chr20 42249524 42249524 1 + G T COAD 42249525 + 42249505 42249545 41 TTTCCAGTGGCTCACGACAGGAGACATCCACCTAAACCAGA TTTCCAGTGGCTCACGACATGAGACATCCACCTAAACCAGA < 41bp 0.422914243068131 0.748582030671809 NA NA prediction 0.497164061343617 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42249525 chr20:42249524 stopgain 0.791 0 20 hm7G_associated_SNPs_21335 0 0 1 0 1 IFT52 chr20:42249497 3'AG 42249497 Downstream 28bp 19816 chr17 7577143 7577143 1 - C A HNSC 7577142 - 7577122 7577162 41 TGAGTAGTGGTAATCTACTGGGACGGAACAGCTTTGAGGTG TGAGTAGTGGTAATCTACTTGGACGGAACAGCTTTGAGGTG < 41bp 0.600636093973591 0.849213759935417 NA NA prediction 0.497155331923652 Functional Gain - TP53 ENSG00000141510 CDS Human protein_coding chr17:7577142 chr17:7577143 synonymous SNV . 0 20 hm7G_associated_SNPs_21337 0 0 1 0 1 TP53 chr17:7577155 3'AG 7577155 Downstream 13bp 19817 chr19 17885244 17885244 1 + G T UCEC 17885245 + 17885225 17885265 41 CAAGGCCTTTCGCCTTCCAGGACTAAGCCGGCGGGAGCGGG CAAGGCCTTTCGCCTTCCATGACTAAGCCGGCGGGAGCGGG < 41bp 0.64114545876213 0.889714055464734 NA NA prediction 0.497137193405209 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885245 chr19:17885244 stopgain 0.415 1 20 hm7G_associated_SNPs_21339 0 0 1 0 2 FCHO1 chr19:17885203 3'AG 17885203 Downstream 42bp 19818 chr19 17885244 17885244 1 + G T UCEC 17885245 + 17885225 17885265 41 CAAGGCCTTTCGCCTTCCAGGACTAAGCCGGCGGGAGCGGG CAAGGCCTTTCGCCTTCCATGACTAAGCCGGCGGGAGCGGG < 41bp 0.64114545876213 0.889714055464734 NA NA prediction 0.497137193405209 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885245 chr19:17885244 stopgain 0.415 1 20 hm7G_associated_SNPs_21339 0 0 1 0 2 FCHO1 chr19:17885287 5'GT 17885287 Upstream 44bp 19819 chr1 150960366 150960366 1 + G T UCEC 150960367 + 150960347 150960387 41 GGCACTGCAGCGGGCAGAAGGACCTAGCAGAGAGGAAACAT GGCACTGCAGCGGGCAGAATGACCTAGCAGAGAGGAAACAT < 41bp 0.631237959994727 0.879786386891232 NA NA prediction 0.49709685379301 Functional Gain - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150960367 chr1:150960366 stopgain 0.139 0 20 hm7G_associated_SNPs_21341 0 0 1 0 2 ANXA9 chr1:150960348 3'AG 150960348 Downstream 19bp 19820 chr1 150960366 150960366 1 + G T UCEC 150960367 + 150960347 150960387 41 GGCACTGCAGCGGGCAGAAGGACCTAGCAGAGAGGAAACAT GGCACTGCAGCGGGCAGAATGACCTAGCAGAGAGGAAACAT < 41bp 0.631237959994727 0.879786386891232 NA NA prediction 0.49709685379301 Functional Gain - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150960367 chr1:150960366 stopgain 0.139 0 20 hm7G_associated_SNPs_21341 0 0 1 0 2 ANXA9 chr1:150960432 5'GT 150960432 Upstream 67bp 19821 chr6 134301349 134301349 1 + G T UCEC 134301350 + 134301330 134301370 41 AGATGTCATTTAAACTTAAGGAAGATTGCTTTGGAAGGAGC AGATGTCATTTAAACTTAATGAAGATTGCTTTGGAAGGAGC < 41bp 0.610242792484175 0.85878156319317 NA NA prediction 0.497077541417989 Functional Gain - TBPL1 ENSG00000028839 CDS Human protein_coding chr6:134301350 chr6:134301349 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21342 0 0 1 0 1 TBPL1 chr6:134301398 5'GT 134301398 Upstream 50bp 19822 chr19 10395480 10395480 1 + G T HNSC 10395481 + 10395461 10395501 41 GGCCCCCGACTGGACGAGAGGGATTGTCCGGGAAACTGGAC GGCCCCCGACTGGACGAGATGGATTGTCCGGGAAACTGGAC < 41bp 0.63006114515691 0.878599388400677 NA NA prediction 0.497076486487533 Functional Gain - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10395481 chr19:10395480 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_21343 0 0 1 0 1 ICAM1 chr19:10395459 3'AG 10395459 Downstream 22bp 19823 chr12 113446923 113446923 1 + G T UCEC 113446924 + 113446904 113446944 41 GGACCCAGCCGAACCCACAGGTGACGTGGGTGGAGGGGACC GGACCCAGCCGAACCCACATGTGACGTGGGTGGAGGGGACC < 41bp 0.613084576216322 0.861603935266254 NA NA prediction 0.497038718099865 Functional Gain - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113446924 chr12:113446923 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_21344 0 0 0 0 1 OAS2 chr12:113446892 3'AG 113446892 Downstream 32bp 19824 chr2 127453538 127453538 1 + G T LUSC 127453539 + 127453519 127453559 41 CAGGTGTGATTGCTGCTGTGGCCATCGTCCTAGTCTCCCTC CAGGTGTGATTGCTGCTGTTGCCATCGTCCTAGTCTCCCTC < 41bp 0.407809718737564 0.748504082387325 NA NA prediction 0.49700816477465 Functional Gain - GYPC ENSG00000136732 CDS Human protein_coding chr2:127453539 chr2:127453538 synonymous SNV . 0 20 hm7G_associated_SNPs_21346 0 0 1 1 1 GYPC chr2:127453522 3'AG 127453522 Downstream 17bp 19825 chr21 33318380 33318380 1 + G T LUAD 33318381 + 33318361 33318401 41 CAACTGCGCAGGGATCCTGGGTTACTCGGATCCGTTCAGCA CAACTGCGCAGGGATCCTGTGTTACTCGGATCCGTTCAGCA < 41bp 0.408081654399683 0.748501287870247 NA NA prediction 0.497002575740493 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318381 chr21:33318380 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_21347 0 0 0 0 1 HUNK chr21:33318348 3'AG 33318348 Downstream 33bp 19826 chr9 32784186 32784186 1 + G T ESCA 32784187 + 32784167 32784207 41 TGGATGGAGTGAAACATGCGGCCTGATGACATTAACCCGAG TGGATGGAGTGAAACATGCTGCCTGATGACATTAACCCGAG < 41bp 0.602870456347695 0.851366938757369 NA NA prediction 0.496992964819349 Functional Gain - TMEM215 ENSG00000188133 CDS Human protein_coding chr9:32784187 chr9:32784186 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21348 0 0 0 0 1 TMEM215 chr9:32784124 3'AG 32784124 Downstream 63bp 19827 chr8 106810978 106810978 1 + G T LUAD 106810979 + 106810959 106810999 41 ATTCCCTTGCAAGTCCTGTGGCATCTGGTATCGGAGTGAGC ATTCCCTTGCAAGTCCTGTTGCATCTGGTATCGGAGTGAGC < 41bp 0.420236159168254 0.74849347295119 NA NA prediction 0.49698694590238 Functional Gain - ZFPM2 ENSG00000169946 CDS Human protein_coding chr8:106810979 chr8:106810978 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21349 0 0 1 0 1 ZFPM2 chr8:106810952 3'AG 106810952 Downstream 27bp 19828 chr2 201499587 201499587 1 + G T UCEC 201499588 + 201499568 201499608 41 TTGTCGTTCCCAAGGGAGAGGATCAAGAAATGGATGTCTAC TTGTCGTTCCCAAGGGAGATGATCAAGAAATGGATGTCTAC < 41bp 0.621591506281824 0.870084031851295 NA NA prediction 0.496985051138942 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499588 chr2:201499587 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_21350 0 0 0 0 2 AOX1 chr2:201499514 3'AG 201499514 Downstream 74bp 19829 chr2 201499587 201499587 1 + G T UCEC 201499588 + 201499568 201499608 41 TTGTCGTTCCCAAGGGAGAGGATCAAGAAATGGATGTCTAC TTGTCGTTCCCAAGGGAGATGATCAAGAAATGGATGTCTAC < 41bp 0.621591506281824 0.870084031851295 NA NA prediction 0.496985051138942 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201499588 chr2:201499587 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_21350 0 0 0 0 2 AOX1 chr2:201499638 5'GT 201499638 Upstream 52bp 19830 chr10 88446996 88446996 1 + G T LUSC 88446997 + 88446977 88447017 41 ATCATGGATGCCATCGCTGGGCAGGCCCAAGCCCAAGGCAG ATCATGGATGCCATCGCTGTGCAGGCCCAAGCCCAAGGCAG < 41bp 0.411415489347663 0.748480311965915 NA NA prediction 0.496960623931831 Functional Gain - LDB3 ENSG00000122367 CDS Human protein_coding chr10:88446997 chr10:88446996 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_21351 0 0 0 0 1 LDB3 chr10:88447029 5'GT 88447029 Upstream 34bp 19831 chr1 110589343 110589343 1 + G T LUAD 110589344 + 110589324 110589364 41 AGGTCCAGGCACAGATGGAGGAGGAATACCTCCGCTCCCCT AGGTCCAGGCACAGATGGATGAGGAATACCTCCGCTCCCCT < 41bp 0.411502018643313 0.748462438776122 NA NA prediction 0.496924877552243 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110589344 chr1:110589343 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_21352 0 0 1 0 2 STRIP1 chr1:110589302 3'AG 110589302 Downstream 42bp 19832 chr1 110589343 110589343 1 + G T LUAD 110589344 + 110589324 110589364 41 AGGTCCAGGCACAGATGGAGGAGGAATACCTCCGCTCCCCT AGGTCCAGGCACAGATGGATGAGGAATACCTCCGCTCCCCT < 41bp 0.411502018643313 0.748462438776122 NA NA prediction 0.496924877552243 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110589344 chr1:110589343 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_21352 0 0 1 0 2 STRIP1 chr1:110589373 5'GT 110589373 Upstream 31bp 19833 chr15 72691226 72691226 1 + G T LUAD 72691227 + 72691207 72691247 41 TGCAACCATGAGCTGTGCTGGAGCCACACACCCAAGCCACC TGCAACCATGAGCTGTGCTTGAGCCACACACCCAAGCCACC < 41bp 0.420270155895269 0.748443324096789 NA NA prediction 0.496886648193579 Functional Gain - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72691227 chr15:72691226 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_21354 0 0 0 0 1 TMEM202 chr15:72691249 5'GT 72691249 Upstream 24bp 19834 chr14 58701088 58701088 1 + G T LIHC 58701089 + 58701069 58701109 41 AAATATTTTTGTCACACAGGGGCTATTTTTGGAGCATTACA AAATATTTTTGTCACACAGTGGCTATTTTTGGAGCATTACA < 41bp 0.452241917297574 0.748421298464907 NA NA prediction 0.496842596929814 Functional Gain - ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58701089 chr14:58701088 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_21356 0 0 0 2 1 ACTR10 chr14:58701088 3'AG 58701088 Downstream 1bp 19835 chr14 73718432 73718432 1 + G T LUSC 73718433 + 73718413 73718453 41 TGGACCATCGAGGCGGCCCGGGCCCTGCCAGCAGCCAGCAC TGGACCATCGAGGCGGCCCTGGCCCTGCCAGCAGCCAGCAC < 41bp 0.390729315784321 0.74841345617293 NA NA prediction 0.49682691234586 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73718433 chr14:73718432 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_21357 0 0 0 0 1 PAPLN chr14:73718372 3'AG 73718372 Downstream 61bp 19836 chr11 113264461 113264461 1 + G T LUAD 113264462 + 113264442 113264482 41 TCCACCTGGACCTCAAGCCGGGCAACATACTCCTGGACAGC TCCACCTGGACCTCAAGCCTGGCAACATACTCCTGGACAGC < 41bp 0.636868602078359 0.885276254427635 NA NA prediction 0.496815304698553 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113264462 chr11:113264461 synonymous SNV . 0 20 hm7G_associated_SNPs_21359 0 0 0 0 1 ANKK1 chr11:113264497 5'GT 113264497 Upstream 37bp 19837 chr10 60553279 60553279 1 + G T STAD 60553280 + 60553260 60553300 41 TGTTGATGTTTGATATGAAGGAAGAAATTGAAGTAGATCCA TGTTGATGTTTGATATGAATGAAGAAATTGAAGTAGATCCA < 41bp 0.618947584385881 0.867353475411717 NA NA prediction 0.496811782051672 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60553280 chr10:60553279 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21360 0 0 1 0 1 BICC1 chr10:60553375 5'GT 60553375 Upstream 97bp 19838 chr12 57987825 57987825 1 + G T BRCA 57987826 + 57987806 57987846 41 AGATCAATGAGCTCAGCCAGGTGCCTCCCCCGGTGATGCTG AGATCAATGAGCTCAGCCATGTGCCTCCCCCGGTGATGCTG < 41bp 0.405542325556852 0.748398266931376 NA NA prediction 0.496796533862753 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57987826 chr12:57987825 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21361 0 0 1 0 3 PIP4K2C chr12:57987808 3'AG 57987808 Downstream 18bp 19839 chr12 57987825 57987825 1 + G T BRCA 57987826 + 57987806 57987846 41 AGATCAATGAGCTCAGCCAGGTGCCTCCCCCGGTGATGCTG AGATCAATGAGCTCAGCCATGTGCCTCCCCCGGTGATGCTG < 41bp 0.405542325556852 0.748398266931376 NA NA prediction 0.496796533862753 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57987826 chr12:57987825 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21361 0 0 1 0 3 PIP4K2C chr12:57987882 5'GT 57987882 Upstream 58bp 19840 chr12 57987825 57987825 1 + G T BRCA 57987826 + 57987806 57987846 41 AGATCAATGAGCTCAGCCAGGTGCCTCCCCCGGTGATGCTG AGATCAATGAGCTCAGCCATGTGCCTCCCCCGGTGATGCTG < 41bp 0.405542325556852 0.748398266931376 NA NA prediction 0.496796533862753 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57987826 chr12:57987825 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21361 0 0 1 0 3 PIP4K2C chr12:57987905 5'GT 57987905 Upstream 81bp 19841 chr5 133477961 133477961 1 + G T BRCA 133477962 + 133477942 133477982 41 GGCCATTGTGCCCCCCTCAGGGAAGCAGGAGCTGCAGCCCT GGCCATTGTGCCCCCCTCATGGAAGCAGGAGCTGCAGCCCT < 41bp 0.629658859669229 0.878053918761062 NA NA prediction 0.496790118183667 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133477962 chr5:133477961 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_21362 0 0 1 0 2 TCF7 chr5:133477876 3'AG 133477876 Downstream 86bp 19842 chr5 133477961 133477961 1 + G T BRCA 133477962 + 133477942 133477982 41 GGCCATTGTGCCCCCCTCAGGGAAGCAGGAGCTGCAGCCCT GGCCATTGTGCCCCCCTCATGGAAGCAGGAGCTGCAGCCCT < 41bp 0.629658859669229 0.878053918761062 NA NA prediction 0.496790118183667 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133477962 chr5:133477961 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_21362 0 0 1 0 2 TCF7 chr5:133477995 5'GT 133477995 Upstream 35bp 19843 chr6 24412529 24412529 1 + G T SKCM 24412530 + 24412510 24412550 41 TTAGAGCAATGGCTGTTCCGGGAACTCCCTTCACAGTTGTC TTAGAGCAATGGCTGTTCCTGGAACTCCCTTCACAGTTGTC < 41bp 0.417190455953633 0.748386767239719 NA NA prediction 0.496773534479438 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24412530 chr6:24412529 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_21363 0 0 1 0 3 MRS2 chr6:24412450 3'AG 24412450 Downstream 80bp 19844 chr6 24412529 24412529 1 + G T SKCM 24412530 + 24412510 24412550 41 TTAGAGCAATGGCTGTTCCGGGAACTCCCTTCACAGTTGTC TTAGAGCAATGGCTGTTCCTGGAACTCCCTTCACAGTTGTC < 41bp 0.417190455953633 0.748386767239719 NA NA prediction 0.496773534479438 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24412530 chr6:24412529 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_21363 0 0 1 0 3 MRS2 chr6:24412514 3'AG 24412514 Downstream 16bp 19845 chr6 24412529 24412529 1 + G T SKCM 24412530 + 24412510 24412550 41 TTAGAGCAATGGCTGTTCCGGGAACTCCCTTCACAGTTGTC TTAGAGCAATGGCTGTTCCTGGAACTCCCTTCACAGTTGTC < 41bp 0.417190455953633 0.748386767239719 NA NA prediction 0.496773534479438 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24412530 chr6:24412529 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_21363 0 0 1 0 3 MRS2 chr6:24412623 5'GT 24412623 Upstream 95bp 19846 chr9 115626649 115626649 1 + G T LUSC 115626650 + 115626630 115626670 41 GGCAGCTACTCATGGGGATGGCTGACAAGAACATCCAGTAT GGCAGCTACTCATGGGGATTGCTGACAAGAACATCCAGTAT < 41bp 0.620581439290968 0.868942991816282 NA NA prediction 0.496723105050629 Functional Gain - SNX30 ENSG00000148158 CDS Human protein_coding chr9:115626650 chr9:115626649 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_21366 0 0 0 0 1 SNX30 chr9:115626679 5'GT 115626679 Upstream 31bp 19847 chr3 130735042 130735042 1 - C A STAD 130735041 - 130735021 130735061 41 CAGTCCTGTCTCCAGATGGGGATGTATCTCAACCAGCTGCT CAGTCCTGTCTCCAGATGGTGATGTATCTCAACCAGCTGCT < 41bp 0.419471761203832 0.748343182252982 NA NA prediction 0.496686364505965 Functional Gain - ASTE1;ATP2C1 ENSG00000017260;ENSG00000034533 CDS Human protein_coding chr3:130735041 chr3:130735042 nonsynonymous SNV 0.921 2 20 hm7G_associated_SNPs_21368 0 0 0 0 1 ASTE1 chr3:130734988 5'GT 130734988 Upstream 55bp 19848 chr1 10035771 10035771 1 + G T UCEC 10035772 + 10035752 10035792 41 CTACCAAGAATTCTAAATGGGTGGAAGTTGATACATGGGAA CTACCAAGAATTCTAAATGTGTGGAAGTTGATACATGGGAA < 41bp 0.617948859645078 0.866289385731625 NA NA prediction 0.496681052173094 Functional Gain - NMNAT1 ENSG00000173614 CDS Human protein_coding chr1:10035772 chr1:10035771 nonsynonymous SNV 0.022 5 20 hm7G_associated_SNPs_21369 0 0 0 0 1 NMNAT1 chr1:10035833 5'GT 10035833 Upstream 63bp 19849 chr2 31467209 31467209 1 + G T LUAD 31467210 + 31467190 31467230 41 CCACAGACTCCTTCATTGCGGTGATGCAGGGAGACATGGAG CCACAGACTCCTTCATTGCTGTGATGCAGGGAGACATGGAG < 41bp 0.410292363831254 0.74833404582816 NA NA prediction 0.49666809165632 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31467210 chr2:31467209 synonymous SNV . 0 20 hm7G_associated_SNPs_21370 0 0 1 0 1 EHD3 chr2:31467140 3'AG 31467140 Downstream 70bp 19850 chr12 113447035 113447035 1 + G T LUAD 113447036 + 113447016 113447056 41 GGAAACCCAATACCACCTTGGAAAGTGCCGGTAAAAGTCAT GGAAACCCAATACCACCTTTGAAAGTGCCGGTAAAAGTCAT < 41bp 0.434809109320793 0.748329868780021 NA NA prediction 0.496659737560042 Functional Gain - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113447036 chr12:113447035 nonsynonymous SNV 0.083 3 20 hm7G_associated_SNPs_21372 0 0 0 0 1 OAS2 chr12:113447045 5'GT 113447045 Upstream 11bp 19851 chr16 29825786 29825786 1 + G T LUSC 29825787 + 29825767 29825807 41 CTGCGTCATCAACTTAGGCGGTGAGTGGGGGCTTGGGACAG CTGCGTCATCAACTTAGGCTGTGAGTGGGGGCTTGGGACAG < 41bp 0.615694236461089 0.864021309535383 NA NA prediction 0.496654146148588 Functional Gain - PRRT2 ENSG00000167371 CDS Human protein_coding chr16:29825787 chr16:29825786 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21373 0 0 1 0 1 PRRT2 chr16:29825786 5'GT 29825786 Upstream 1bp 19852 chr3 119452322 119452322 1 + G T LUSC 119452323 + 119452303 119452343 41 TTTCTGAAGAGGGCAGCAAGGTTGGACTATGAGTTGGCAGA TTTCTGAAGAGGGCAGCAATGTTGGACTATGAGTTGGCAGA < 41bp 0.433852407903387 0.748286629744085 NA NA prediction 0.496573259488171 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119452323 chr3:119452322 nonsynonymous SNV 0.013 3 20 hm7G_associated_SNPs_21375 0 0 0 0 1 MAATS1 chr3:119452353 5'GT 119452353 Upstream 32bp 19853 chr17 1678395 1678395 1 + G T UCEC 1678396 + 1678376 1678416 41 CCAGAAAGACTTCCCTCGAGGATTTCTACTTGGATGAAGAG CCAGAAAGACTTCCCTCGATGATTTCTACTTGGATGAAGAG < 41bp 0.63166801861802 0.879938261807903 NA NA prediction 0.496540486379765 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1678396 chr17:1678395 nonsynonymous SNV 0.897 1 20 hm7G_associated_SNPs_21376 0 0 1 0 2 SERPINF1 chr17:1678352 3'AG 1678352 Downstream 44bp 19854 chr17 1678395 1678395 1 + G T UCEC 1678396 + 1678376 1678416 41 CCAGAAAGACTTCCCTCGAGGATTTCTACTTGGATGAAGAG CCAGAAAGACTTCCCTCGATGATTTCTACTTGGATGAAGAG < 41bp 0.63166801861802 0.879938261807903 NA NA prediction 0.496540486379765 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1678396 chr17:1678395 nonsynonymous SNV 0.897 1 20 hm7G_associated_SNPs_21376 0 0 1 0 2 SERPINF1 chr17:1678494 5'GT 1678494 Upstream 100bp 19855 chr1 53282232 53282232 1 + G T LUSC 53282233 + 53282213 53282253 41 TCCATTTTTCCCATTACTTGGCTGTTTCACAACACCAGGAG TCCATTTTTCCCATTACTTTGCTGTTTCACAACACCAGGAG < 41bp 0.410616338872083 0.748240517508369 NA NA prediction 0.496481035016738 Functional Gain - ZYG11B ENSG00000162378 CDS Human protein_coding chr1:53282233 chr1:53282232 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21381 0 0 1 0 2 ZYG11B chr1:53282204 3'AG 53282204 Downstream 29bp 19856 chr1 53282232 53282232 1 + G T LUSC 53282233 + 53282213 53282253 41 TCCATTTTTCCCATTACTTGGCTGTTTCACAACACCAGGAG TCCATTTTTCCCATTACTTTGCTGTTTCACAACACCAGGAG < 41bp 0.410616338872083 0.748240517508369 NA NA prediction 0.496481035016738 Functional Gain - ZYG11B ENSG00000162378 CDS Human protein_coding chr1:53282233 chr1:53282232 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21381 0 0 1 0 2 ZYG11B chr1:53282301 5'GT 53282301 Upstream 70bp 19857 chr17 73089759 73089759 1 + G T CESC 73089760 + 73089740 73089780 41 GGCCCTGGAGCGTGCAGATGGCAGCTGGGCCTGGGTGGTGC GGCCCTGGAGCGTGCAGATTGCAGCTGGGCCTGGGTGGTGC < 41bp 0.637104084317559 0.88534249932117 NA NA prediction 0.496476830007222 Functional Gain - SLC16A5 ENSG00000170190 CDS Human protein_coding chr17:73089760 chr17:73089759 nonsynonymous SNV 0.835 2 20 hm7G_associated_SNPs_21382 0 0 0 0 1 SLC16A5 chr17:73089684 3'AG 73089684 Downstream 76bp 19858 chr12 52314571 52314571 1 + G T OV 52314572 + 52314552 52314592 41 GGCCTAGCTCAGATGATGCGGGAGTGCTGGTACCCAAACCC GGCCTAGCTCAGATGATGCTGGAGTGCTGGTACCCAAACCC < 41bp 0.411486841750491 0.748220461032649 NA NA prediction 0.496440922065299 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52314572 chr12:52314571 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_21384 0 0 0 0 1 ACVRL1 chr12:52314543 3'AG 52314543 Downstream 29bp 19859 chr10 7762830 7762830 1 + G T COAD 7762831 + 7762811 7762851 41 ATCTCTAGGTAGATGTGTGGGTTATCGAACCACAGGGACTG ATCTCTAGGTAGATGTGTGTGTTATCGAACCACAGGGACTG < 41bp 0.435969198174698 0.748220412906584 NA NA prediction 0.496440825813169 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762831 chr10:7762830 nonsynonymous SNV 0.193 1 20 hm7G_associated_SNPs_21385 0 0 0 0 2 ITIH2 chr10:7762819 3'AG 7762819 Downstream 12bp 19860 chr10 7762830 7762830 1 + G T COAD 7762831 + 7762811 7762851 41 ATCTCTAGGTAGATGTGTGGGTTATCGAACCACAGGGACTG ATCTCTAGGTAGATGTGTGTGTTATCGAACCACAGGGACTG < 41bp 0.435969198174698 0.748220412906584 NA NA prediction 0.496440825813169 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762831 chr10:7762830 nonsynonymous SNV 0.193 1 20 hm7G_associated_SNPs_21385 0 0 0 0 2 ITIH2 chr10:7762926 5'GT 7762926 Upstream 97bp 19861 chr12 72291672 72291672 1 + G T SARC 72291673 + 72291653 72291693 41 AGTGGAAATCCATCAGCCAGGAACAAGAGAAAAGAAATTCG AGTGGAAATCCATCAGCCATGAACAAGAGAAAAGAAATTCG < 41bp 0.615914797137487 0.864116542962861 NA NA prediction 0.496403491650748 Functional Gain - TBC1D15 ENSG00000121749 CDS Human protein_coding chr12:72291673 chr12:72291672 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_21387 0 0 1 0 1 TBC1D15 chr12:72291627 3'AG 72291627 Downstream 46bp 19862 chr1 3646622 3646622 1 + G T LUAD 3646623 + 3646603 3646643 41 GCCCATGAACAAGGTGCACGGGGGCATGAACAAGCTGCCCT GCCCATGAACAAGGTGCACTGGGGCATGAACAAGCTGCCCT < 41bp 0.427218226065986 0.748195108234617 NA NA prediction 0.496390216469234 Functional Gain - TP73 ENSG00000078900 CDS Human protein_coding chr1:3646623 chr1:3646622 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_21388 0 0 0 0 2 TP73 chr1:3646564 3'AG 3646564 Downstream 59bp 19863 chr1 3646622 3646622 1 + G T LUAD 3646623 + 3646603 3646643 41 GCCCATGAACAAGGTGCACGGGGGCATGAACAAGCTGCCCT GCCCATGAACAAGGTGCACTGGGGCATGAACAAGCTGCCCT < 41bp 0.427218226065986 0.748195108234617 NA NA prediction 0.496390216469234 Functional Gain - TP73 ENSG00000078900 CDS Human protein_coding chr1:3646623 chr1:3646622 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_21388 0 0 0 0 2 TP73 chr1:3646712 5'GT 3646712 Upstream 91bp 19864 chr13 114503838 114503838 1 + G T UCEC 114503839 + 114503819 114503859 41 ACGGCAAGTGCCAGCTGAAGGTGAGAAGCAACACCTGTTAC ACGGCAAGTGCCAGCTGAATGTGAGAAGCAACACCTGTTAC < 41bp 0.429849932411075 0.748185609969413 NA NA prediction 0.496371219938826 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114503839 chr13:114503838 nonsynonymous SNV 0.892 2 20 hm7G_associated_SNPs_21390 0 0 0 0 2 TMEM255B chr13:114503800 3'AG 114503800 Downstream 39bp 19865 chr13 114503838 114503838 1 + G T UCEC 114503839 + 114503819 114503859 41 ACGGCAAGTGCCAGCTGAAGGTGAGAAGCAACACCTGTTAC ACGGCAAGTGCCAGCTGAATGTGAGAAGCAACACCTGTTAC < 41bp 0.429849932411075 0.748185609969413 NA NA prediction 0.496371219938826 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114503839 chr13:114503838 nonsynonymous SNV 0.892 2 20 hm7G_associated_SNPs_21390 0 0 0 0 2 TMEM255B chr13:114503885 5'GT 114503885 Upstream 48bp 19866 chr6 43271888 43271888 1 + G T LUAD 43271889 + 43271869 43271909 41 GCCCAAGCTTACTTATGGGGGGATCGCCCTGCTGGCTGCCG GCCCAAGCTTACTTATGGGTGGATCGCCCTGCTGGCTGCCG < 41bp 0.404772100450709 0.748180645555796 NA NA prediction 0.496361291111591 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43271889 chr6:43271888 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_21391 0 0 1 0 1 SLC22A7 chr6:43271982 5'GT 43271982 Upstream 95bp 19867 chr7 152550593 152550593 1 + G T COAD 152550594 + 152550574 152550614 41 TCCAGCCGAAGCCTGTGGAGGTCCAGGTGGTCACGCATCAC TCCAGCCGAAGCCTGTGGATGTCCAGGTGGTCACGCATCAC < 41bp 0.620924974081174 0.869105441324387 NA NA prediction 0.496360934486427 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152550594 chr7:152550593 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_21392 0 0 1 0 2 ACTR3B chr7:152550579 3'AG 152550579 Downstream 15bp 19868 chr7 152550593 152550593 1 + G T COAD 152550594 + 152550574 152550614 41 TCCAGCCGAAGCCTGTGGAGGTCCAGGTGGTCACGCATCAC TCCAGCCGAAGCCTGTGGATGTCCAGGTGGTCACGCATCAC < 41bp 0.620924974081174 0.869105441324387 NA NA prediction 0.496360934486427 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152550594 chr7:152550593 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_21392 0 0 1 0 2 ACTR3B chr7:152550662 5'GT 152550662 Upstream 70bp 19869 chr17 73554653 73554653 1 + G T STAD 73554654 + 73554634 73554674 41 TTGGAGCCTGAAGGTCAAGGGCGGGGCATCGGAGCTGCAGG TTGGAGCCTGAAGGTCAAGTGCGGGGCATCGGAGCTGCAGG < 41bp 0.400566213127628 0.748166228707337 NA NA prediction 0.496332457414673 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73554654 chr17:73554653 nonsynonymous SNV 0.541 1 20 hm7G_associated_SNPs_21395 0 0 0 0 1 LLGL2 chr17:73554593 3'AG 73554593 Downstream 61bp 19870 chr1 207071194 207071194 1 + G T COAD 207071195 + 207071175 207071215 41 GAGATGAATTTTCAACAGAGGCTGCAAAGCCTGTGGACTTT GAGATGAATTTTCAACAGATGCTGCAAAGCCTGTGGACTTT < 41bp 0.608810081259072 0.856975372483301 NA NA prediction 0.496330582448458 Functional Gain - IL24 ENSG00000162892 CDS Human protein_coding chr1:207071195 chr1:207071194 nonsynonymous SNV 0.027 1 20 hm7G_associated_SNPs_21396 0 0 0 0 1 IL24 chr1:207071221 5'GT 207071221 Upstream 28bp 19871 chr4 160259471 160259471 1 + G T UCEC 160259472 + 160259452 160259492 41 TCTTTGTTCAGTGATATTGGGATTGGTCAGTCTCAAGATGA TCTTTGTTCAGTGATATTGTGATTGGTCAGTCTCAAGATGA < 41bp 0.432591805165155 0.748162944996907 NA NA prediction 0.496325889993814 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160259472 chr4:160259471 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21397 0 0 1 0 1 RAPGEF2 chr4:160259463 3'AG 160259463 Downstream 9bp 19872 chr22 25577681 25577681 1 + G T UCEC 25577682 + 25577662 25577702 41 ACAGAGGAGAAATCACCCAGGAAGGAGGAGTCGGATGAGGA ACAGAGGAGAAATCACCCATGAAGGAGGAGTCGGATGAGGA < 41bp 0.628367497030925 0.876528123816068 NA NA prediction 0.496321253570285 Functional Gain - KIAA1671 ENSG00000197077 CDS Human protein_coding chr22:25577682 chr22:25577681 nonsynonymous SNV 0.593 2 20 hm7G_associated_SNPs_21398 0 0 1 0 1 KIAA1671 chr22:25577666 3'AG 25577666 Downstream 16bp 19873 chr9 35750663 35750663 1 + G T LUAD 35750664 + 35750644 35750684 41 ACCTTTTTCAGGTGAGAGGGGCCAGTGTATCCTTTCTACTC ACCTTTTTCAGGTGAGAGGTGCCAGTGTATCCTTTCTACTC < 41bp 0.626319639572711 0.874475116371467 NA NA prediction 0.496310953597512 Functional Gain - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35750664 chr9:35750663 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_21399 0 0 0 0 2 RGP1 chr9:35750655 3'AG 35750655 Downstream 9bp 19874 chr9 35750663 35750663 1 + G T LUAD 35750664 + 35750644 35750684 41 ACCTTTTTCAGGTGAGAGGGGCCAGTGTATCCTTTCTACTC ACCTTTTTCAGGTGAGAGGTGCCAGTGTATCCTTTCTACTC < 41bp 0.626319639572711 0.874475116371467 NA NA prediction 0.496310953597512 Functional Gain - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35750664 chr9:35750663 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_21399 0 0 0 0 2 RGP1 chr9:35750738 5'GT 35750738 Upstream 76bp 19875 chr3 9719032 9719032 1 + G T LGG 9719033 + 9719013 9719053 41 TCAAGGAATATAAAGATCGGGATTACATGGCAGAAGGGCTC TCAAGGAATATAAAGATCGTGATTACATGGCAGAAGGGCTC < 41bp 0.629630747776017 0.877768077420742 NA NA prediction 0.49627465928945 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9719033 chr3:9719032 synonymous SNV . 0 20 hm7G_associated_SNPs_21401 0 0 1 0 2 MTMR14 chr3:9719001 3'AG 9719001 Downstream 32bp 19876 chr3 9719032 9719032 1 + G T LGG 9719033 + 9719013 9719053 41 TCAAGGAATATAAAGATCGGGATTACATGGCAGAAGGGCTC TCAAGGAATATAAAGATCGTGATTACATGGCAGAAGGGCTC < 41bp 0.629630747776017 0.877768077420742 NA NA prediction 0.49627465928945 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9719033 chr3:9719032 synonymous SNV . 0 20 hm7G_associated_SNPs_21401 0 0 1 0 2 MTMR14 chr3:9719071 5'GT 9719071 Upstream 40bp 19877 chr6 46797136 46797136 1 + G T SKCM 46797137 + 46797117 46797157 41 GCACCAGCTCGGGGTCCGCGGAAGAGGCAGCCCTACTGGAG GCACCAGCTCGGGGTCCGCTGAAGAGGCAGCCCTACTGGAG < 41bp 0.636214826636362 0.884351475436432 NA NA prediction 0.49627329760014 Functional Gain - MEP1A ENSG00000112818 CDS Human protein_coding chr6:46797137 chr6:46797136 synonymous SNV . 0 20 hm7G_associated_SNPs_21402 0 0 0 0 1 MEP1A chr6:46797093 3'AG 46797093 Downstream 44bp 19878 chr1 200882703 200882703 1 + G T LUAD 200882704 + 200882684 200882724 41 TGCGGAGATCGCCTGATGGGGCCCCTGTGCAAGTCTTTGTA TGCGGAGATCGCCTGATGGTGCCCCTGTGCAAGTCTTTGTA < 41bp 0.421296735251353 0.748106718304445 NA NA prediction 0.49621343660889 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200882704 chr1:200882703 synonymous SNV . 0 20 hm7G_associated_SNPs_21403 0 0 0 0 1 C1orf106 chr1:200882665 3'AG 200882665 Downstream 39bp 19879 chr16 1691144 1691144 1 + G T LUAD 1691145 + 1691125 1691165 41 TTTTTCCATTTAAAGGTATGGATGACAAGAATGCAACAAAG TTTTTCCATTTAAAGGTATTGATGACAAGAATGCAACAAAG < 41bp 0.424228358221763 0.748091791585143 NA NA prediction 0.496183583170286 Functional Gain - CRAMP1 ENSG00000007545;ENSG00000261732 CDS Human other chr16:1691145 chr16:1691144 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21405 0 0 1 0 2 CRAMP1 chr16:1691140 3'AG 1691140 Downstream 5bp 19880 chr16 1691144 1691144 1 + G T LUAD 1691145 + 1691125 1691165 41 TTTTTCCATTTAAAGGTATGGATGACAAGAATGCAACAAAG TTTTTCCATTTAAAGGTATTGATGACAAGAATGCAACAAAG < 41bp 0.424228358221763 0.748091791585143 NA NA prediction 0.496183583170286 Functional Gain - CRAMP1 ENSG00000007545;ENSG00000261732 CDS Human other chr16:1691145 chr16:1691144 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21405 0 0 1 0 2 CRAMP1 chr16:1691188 5'GT 1691188 Upstream 45bp 19881 chr20 47691917 47691917 1 + G T UCEC 47691918 + 47691898 47691938 41 ATTATGCAAGTTTTTTGAGGGACCTGTGACAGGAATCTTCT ATTATGCAAGTTTTTTGAGTGACCTGTGACAGGAATCTTCT < 41bp 0.622558189998602 0.870600742740569 NA NA prediction 0.496085105483933 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47691918 chr20:47691917 stopgain 0.994 1 20 hm7G_associated_SNPs_21413 0 0 1 0 1 CSE1L chr20:47691855 3'AG 47691855 Downstream 63bp 19882 chr5 80554963 80554963 1 + G T UCEC 80554964 + 80554944 80554984 41 ACGGTTAATCCAAGAACGAGGCTGGGAGTTCATGTGGAATG ACGGTTAATCCAAGAACGATGCTGGGAGTTCATGTGGAATG < 41bp 0.607525939358422 0.855556449532547 NA NA prediction 0.49606102034825 Functional Gain - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80554964 chr5:80554963 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_21414 0 0 0 0 1 CKMT2 chr5:80554939 3'AG 80554939 Downstream 25bp 19883 chr13 25265367 25265367 1 + G T UCEC 25265368 + 25265348 25265388 41 TTGTGGCCAATGTGCCCGAGGGCCTCCTGGCCACTGTCACT TTGTGGCCAATGTGCCCGATGGCCTCCTGGCCACTGTCACT < 41bp 0.394279685880625 0.748029952732762 NA NA prediction 0.496059905465525 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25265368 chr13:25265367 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_21415 0 0 0 0 1 ATP12A chr13:25265388 5'GT 25265388 Upstream 22bp 19884 chr18 19019511 19019511 1 + G T COAD 19019512 + 19019492 19019532 41 TGGAAACAGTAGCCATGGAGGGAAGGGCAGTGCATCCAGCT TGGAAACAGTAGCCATGGATGGAAGGGCAGTGCATCCAGCT < 41bp 0.407725461393083 0.748018685249363 NA NA prediction 0.496037370498726 Functional Gain - GREB1L ENSG00000141449 CDS Human protein_coding chr18:19019512 chr18:19019511 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21417 0 0 0 0 2 GREB1L chr18:19019482 3'AG 19019482 Downstream 30bp 19885 chr18 19019511 19019511 1 + G T COAD 19019512 + 19019492 19019532 41 TGGAAACAGTAGCCATGGAGGGAAGGGCAGTGCATCCAGCT TGGAAACAGTAGCCATGGATGGAAGGGCAGTGCATCCAGCT < 41bp 0.407725461393083 0.748018685249363 NA NA prediction 0.496037370498726 Functional Gain - GREB1L ENSG00000141449 CDS Human protein_coding chr18:19019512 chr18:19019511 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21417 0 0 0 0 2 GREB1L chr18:19019598 5'GT 19019598 Upstream 88bp 19886 chr1 156851340 156851340 1 + G T LUAD 156851341 + 156851321 156851361 41 ATGCGGGGCTGCTGGCAGCGGGAGCCCCAGCAACGCCACAG ATGCGGGGCTGCTGGCAGCTGGAGCCCCAGCAACGCCACAG < 41bp 0.618688008181308 0.866683441106383 NA NA prediction 0.495990865850152 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156851341 chr1:156851340 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21418 0 0 0 0 1 NTRK1 chr1:156851249 3'AG 156851249 Downstream 92bp 19887 chr19 18963017 18963017 1 + G T LIHC 18963018 + 18962998 18963038 41 CCGCAGCATGTCCTCCTGCGGTACGAGGACGCCTACCAGTA CCGCAGCATGTCCTCCTGCTGTACGAGGACGCCTACCAGTA < 41bp 0.405536212842014 0.747995134314036 NA NA prediction 0.495990268628072 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18963018 chr19:18963017 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_21419 0 0 1 0 2 UPF1 chr19:18962944 3'AG 18962944 Downstream 74bp 19888 chr19 18963017 18963017 1 + G T LIHC 18963018 + 18962998 18963038 41 CCGCAGCATGTCCTCCTGCGGTACGAGGACGCCTACCAGTA CCGCAGCATGTCCTCCTGCTGTACGAGGACGCCTACCAGTA < 41bp 0.405536212842014 0.747995134314036 NA NA prediction 0.495990268628072 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18963018 chr19:18963017 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_21419 0 0 1 0 2 UPF1 chr19:18963105 5'GT 18963105 Upstream 89bp 19889 chr7 142566876 142566876 1 + G T LUAD 142566877 + 142566857 142566897 41 GCCACTTGGTGTGCAAGGTGGCCCGTCTTGGCCACAGTCCT GCCACTTGGTGTGCAAGGTTGCCCGTCTTGGCCACAGTCCT < 41bp 0.404783337510576 0.747993048568251 NA NA prediction 0.495986097136502 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566877 chr7:142566876 synonymous SNV . 0 20 hm7G_associated_SNPs_21420 0 0 0 0 1 EPHB6 chr7:142566900 5'GT 142566900 Upstream 25bp 19890 chrX 134991835 134991835 1 + G T LUAD 134991836 + 134991816 134991856 41 ATGTCCATGAAGAGAGGATGGAAAATAACCAACCACAACCT ATGTCCATGAAGAGAGGATTGAAAATAACCAACCACAACCT < 41bp 0.623727001213461 0.871717778221172 NA NA prediction 0.495981554015423 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134991836 chrX:134991835 nonsynonymous SNV 0.036 0 20 hm7G_associated_SNPs_21421 0 0 0 0 1 SAGE1 chrX:134991798 3'AG 134991798 Downstream 38bp 19891 chr8 55534691 55534691 1 + G T COAD 55534692 + 55534672 55534712 41 TTTAGGTTCCCAGCCTCCAGGCAGTGATCCTGAGCTCTGGA TTTAGGTTCCCAGCCTCCATGCAGTGATCCTGAGCTCTGGA < 41bp 0.417113165414159 0.747986490641239 NA NA prediction 0.495972981282477 Functional Gain - RP1 ENSG00000104237 CDS Human protein_coding chr8:55534692 chr8:55534691 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21422 0 0 0 0 1 RP1 chr8:55534677 3'AG 55534677 Downstream 15bp 19892 chr10 90427435 90427435 1 + G T LUAD 90427436 + 90427416 90427456 41 TATGGGAAGAAAAATTCAGGGAATACAGGTATATATAAGCT TATGGGAAGAAAAATTCAGTGAATACAGGTATATATAAGCT < 41bp 0.450704371802397 0.747984347191588 NA NA prediction 0.495968694383176 Functional Gain - LIPF ENSG00000182333 CDS Human protein_coding chr10:90427436 chr10:90427435 nonsynonymous SNV 0.091 1 20 hm7G_associated_SNPs_21423 0 0 0 0 1 LIPF chr10:90427443 5'GT 90427443 Upstream 9bp 19893 chr21 43524099 43524099 1 - C A UCEC 43524098 - 43524078 43524118 41 GATGCCCATGGGAAACCCGGGGTCCTGCACGGTGAGCTTGA GATGCCCATGGGAAACCCGTGGTCCTGCACGGTGAGCTTGA < 41bp 0.623120144113461 0.871088569445965 NA NA prediction 0.495936850665009 Functional Gain - UMODL1 ENSG00000177398;ENSG00000184385 CDS Human other chr21:43524098 chr21:43524099 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_21425 0 0 0 0 1 UMODL1 chr21:43524145 3'AG 43524145 Downstream 47bp 19894 chr1 41450626 41450626 1 + G T GBM 41450627 + 41450607 41450647 41 ACCAGTATGTCATTAACAAGGAACGGAAAGGAGATTACTTG ACCAGTATGTCATTAACAATGAACGGAAAGGAGATTACTTG < 41bp 0.611713841154743 0.859681687561144 NA NA prediction 0.495935692812802 Functional Gain - CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41450627 chr1:41450626 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21426 0 0 1 0 1 CTPS1 chr1:41450663 5'GT 41450663 Upstream 38bp 19895 chrX 1718147 1718147 1 + G T LUAD 1718148 + 1718128 1718168 41 GAAGAGAAGCTTCGCAAGAGGGAGCAGAAGCAGAGGGACCG GAAGAGAAGCTTCGCAAGATGGAGCAGAAGCAGAGGGACCG < 41bp 0.626425205218788 0.874346260548025 NA NA prediction 0.495842110658473 Functional Gain - AKAP17A ENSG00000197976 CDS Human protein_coding chrX:1718148 chrX:1718147 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_21431 0 0 1 0 1 AKAP17A chrX:1718085 3'AG 1718085 Downstream 63bp 19896 chr6 50696669 50696669 1 + G T LUAD 50696670 + 50696650 50696690 41 ACAAGGTGACCATTGCTGAGGTAAAGAGGCGCCTCTCCCCA ACAAGGTGACCATTGCTGATGTAAAGAGGCGCCTCTCCCCA < 41bp 0.62009965787083 0.867998877427183 NA NA prediction 0.495798439112706 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50696670 chr6:50696669 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21435 0 0 0 1 1 TFAP2D chr6:50696734 5'GT 50696734 Upstream 66bp 19897 chr14 24772344 24772344 1 + G T SKCM 24772345 + 24772325 24772365 41 TTGGCCCAGGGCCACCCAGGGGTAGTCATTGCCCTGGTGGG TTGGCCCAGGGCCACCCAGTGGTAGTCATTGCCCTGGTGGG < 41bp 0.635068507293041 0.882965526559338 NA NA prediction 0.495794038532594 Functional Gain - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772345 chr14:24772344 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_21436 0 0 1 0 2 NOP9 chr14:24772280 3'AG 24772280 Downstream 65bp 19898 chr14 24772344 24772344 1 + G T SKCM 24772345 + 24772325 24772365 41 TTGGCCCAGGGCCACCCAGGGGTAGTCATTGCCCTGGTGGG TTGGCCCAGGGCCACCCAGTGGTAGTCATTGCCCTGGTGGG < 41bp 0.635068507293041 0.882965526559338 NA NA prediction 0.495794038532594 Functional Gain - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772345 chr14:24772344 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_21436 0 0 1 0 2 NOP9 chr14:24772420 5'GT 24772420 Upstream 77bp 19899 chr5 134002578 134002578 1 + G T STAD 134002579 + 134002559 134002599 41 TCAACCAGGAGCTCCTCATGGGCCCCCTCCAGCTGGAGGCC TCAACCAGGAGCTCCTCATTGGCCCCCTCCAGCTGGAGGCC < 41bp 0.396011098011011 0.747884156529304 NA NA prediction 0.495768313058607 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134002579 chr5:134002578 nonsynonymous SNV 0.842 3 20 hm7G_associated_SNPs_21437 0 0 1 0 1 SEC24A chr5:134002513 3'AG 134002513 Downstream 66bp 19900 chr7 31735108 31735108 1 + G T UCEC 31735109 + 31735089 31735129 41 TTTCAGACCAGTTCATTAAGGACTGTGATCTCAAAAAGAAG TTTCAGACCAGTTCATTAATGACTGTGATCTCAAAAAGAAG < 41bp 0.438112522545152 0.747872302204941 NA NA prediction 0.495744604409883 Functional Gain - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31735109 chr7:31735108 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21439 0 0 0 0 1 PPP1R17 chr7:31735083 3'AG 31735083 Downstream 26bp 19901 chr19 12858032 12858032 1 + G T SARC 12858033 + 12858013 12858053 41 GTGCAACATGCTGGGCCTGGGGGACATGAACGCAGACCAGC GTGCAACATGCTGGGCCTGTGGGACATGAACGCAGACCAGC < 41bp 0.640105172977842 0.887976219386132 NA NA prediction 0.495742092816579 Functional Gain - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12858033 chr19:12858032 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_21440 0 0 1 0 2 ASNA1 chr19:12858011 3'AG 12858011 Downstream 22bp 19902 chr19 12858032 12858032 1 + G T SARC 12858033 + 12858013 12858053 41 GTGCAACATGCTGGGCCTGGGGGACATGAACGCAGACCAGC GTGCAACATGCTGGGCCTGTGGGACATGAACGCAGACCAGC < 41bp 0.640105172977842 0.887976219386132 NA NA prediction 0.495742092816579 Functional Gain - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12858033 chr19:12858032 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_21440 0 0 1 0 2 ASNA1 chr19:12858118 5'GT 12858118 Upstream 87bp 19903 chr1 40432832 40432832 1 + G T LUAD 40432833 + 40432813 40432853 41 AATTCCAGAATCTACTCCTGGCCATCATGGTGAGTGGGACC AATTCCAGAATCTACTCCTTGCCATCATGGTGAGTGGGACC < 41bp 0.638739354987344 0.886588887714993 NA NA prediction 0.495699065455297 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432833 chr1:40432832 synonymous SNV . 0 20 hm7G_associated_SNPs_21441 0 0 0 2 2 MFSD2A chr1:40432758 3'AG 40432758 Downstream 75bp 19904 chr1 40432832 40432832 1 + G T LUAD 40432833 + 40432813 40432853 41 AATTCCAGAATCTACTCCTGGCCATCATGGTGAGTGGGACC AATTCCAGAATCTACTCCTTGCCATCATGGTGAGTGGGACC < 41bp 0.638739354987344 0.886588887714993 NA NA prediction 0.495699065455297 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40432833 chr1:40432832 synonymous SNV . 0 20 hm7G_associated_SNPs_21441 0 0 0 2 2 MFSD2A chr1:40432841 5'GT 40432841 Upstream 10bp 19905 chr16 54966495 54966495 1 + G T LUAD 54966496 + 54966476 54966516 41 CTGGGATCGTACCCTTACGGGGACCCAGCGTACCGGAAGAA CTGGGATCGTACCCTTACGTGGACCCAGCGTACCGGAAGAA < 41bp 0.404716436706035 0.747825782532304 NA NA prediction 0.495651565064607 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54966496 chr16:54966495 nonsynonymous SNV 0.924 4 20 hm7G_associated_SNPs_21442 0 0 0 0 1 IRX5 chr16:54966410 3'AG 54966410 Downstream 86bp 19906 chr15 38614577 38614577 1 + G T SARC 38614578 + 38614558 38614598 41 TGCTAGGGCTTTTGATAGAGGTATCCGAAGAGCTATAGAGG TGCTAGGGCTTTTGATAGATGTATCCGAAGAGCTATAGAGG < 41bp 0.605168271018551 0.852961086201903 NA NA prediction 0.495585630366703 Functional Gain - SPRED1 ENSG00000166068 CDS Human protein_coding chr15:38614578 chr15:38614577 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21445 0 0 1 0 1 SPRED1 chr15:38614610 5'GT 38614610 Upstream 34bp 19907 chr12 133758594 133758594 1 + G T UCEC 133758595 + 133758575 133758615 41 ACCGTAGGGATGGCCACCAGGGTCCGGACAGCTTCTATTTG ACCGTAGGGATGGCCACCATGGTCCGGACAGCTTCTATTTG < 41bp 0.441078013926871 0.747790415357604 NA NA prediction 0.495580830715209 Functional Gain - ZNF268 ENSG00000090612;ENSG00000256825 CDS Human other chr12:133758595 chr12:133758594 nonsynonymous SNV 0.774 1 20 hm7G_associated_SNPs_21446 0 0 1 0 2 ZNF268 chr12:133758532 3'AG 133758532 Downstream 63bp 19908 chr12 133758594 133758594 1 + G T UCEC 133758595 + 133758575 133758615 41 ACCGTAGGGATGGCCACCAGGGTCCGGACAGCTTCTATTTG ACCGTAGGGATGGCCACCATGGTCCGGACAGCTTCTATTTG < 41bp 0.441078013926871 0.747790415357604 NA NA prediction 0.495580830715209 Functional Gain - ZNF268 ENSG00000090612;ENSG00000256825 CDS Human other chr12:133758595 chr12:133758594 nonsynonymous SNV 0.774 1 20 hm7G_associated_SNPs_21446 0 0 1 0 2 ZNF268 chr12:133758616 5'GT 133758616 Upstream 23bp 19909 chr9 131482026 131482026 1 + G T LUSC 131482027 + 131482007 131482047 41 CGGAGTTCCTGGCTCCCGAGGTGCTGACCCAGGAGGCATAC CGGAGTTCCTGGCTCCCGATGTGCTGACCCAGGAGGCATAC < 41bp 0.401479402081151 0.74776189837623 NA NA prediction 0.495523796752461 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131482027 chr9:131482026 nonsynonymous SNV 0.402 3 20 hm7G_associated_SNPs_21451 0 0 1 0 2 PKN3 chr9:131481965 3'AG 131481965 Downstream 62bp 19910 chr9 131482026 131482026 1 + G T LUSC 131482027 + 131482007 131482047 41 CGGAGTTCCTGGCTCCCGAGGTGCTGACCCAGGAGGCATAC CGGAGTTCCTGGCTCCCGATGTGCTGACCCAGGAGGCATAC < 41bp 0.401479402081151 0.74776189837623 NA NA prediction 0.495523796752461 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131482027 chr9:131482026 nonsynonymous SNV 0.402 3 20 hm7G_associated_SNPs_21451 0 0 1 0 2 PKN3 chr9:131482107 5'GT 131482107 Upstream 82bp 19911 chr19 50939898 50939898 1 + G T LUSC 50939899 + 50939879 50939919 41 CACCGTGGAGCTGCACATTGGGAAGGTGGTACTGGGGGACC CACCGTGGAGCTGCACATTTGGAAGGTGGTACTGGGGGACC < 41bp 0.637898293668759 0.885654139972855 NA NA prediction 0.495511692608192 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50939899 chr19:50939898 nonsynonymous SNV 0.860 1 20 hm7G_associated_SNPs_21452 0 0 0 0 1 MYBPC2 chr19:50939874 3'AG 50939874 Downstream 25bp 19912 chr2 88402585 88402585 1 + G T rs61731026 88402586 + 88402566 88402606 41 CTCTTTCCCAGCCCTCTCAGGAAGTGGTGAAGGAGATGATA CTCTTTCCCAGCCCTCTCATGAAGTGGTGAAGGAGATGATA < 41bp 0.62046226879144 0.868185204810336 NA NA prediction 0.495445872037793 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88402586 chr2:88402585 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_21455 0 0 0 0 2 SMYD1 chr2:88402577 3'AG 88402577 Downstream 9bp 19913 chr2 88402585 88402585 1 + G T rs61731026 88402586 + 88402566 88402606 41 CTCTTTCCCAGCCCTCTCAGGAAGTGGTGAAGGAGATGATA CTCTTTCCCAGCCCTCTCATGAAGTGGTGAAGGAGATGATA < 41bp 0.62046226879144 0.868185204810336 NA NA prediction 0.495445872037793 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88402586 chr2:88402585 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_21455 0 0 0 0 2 SMYD1 chr2:88402669 5'GT 88402669 Upstream 85bp 19914 chr9 104079709 104079709 1 + G T UCEC 104079710 + 104079690 104079730 41 CTTCCAAACCCAAGCCTGAGGATCCCCGTGGAGTACCCCTA CTTCCAAACCCAAGCCTGATGATCCCCGTGGAGTACCCCTA < 41bp 0.627450835720477 0.87516991046277 NA NA prediction 0.495438149484585 Functional Gain - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104079710 chr9:104079709 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21456 0 0 0 0 2 PLPPR1 chr9:104079647 3'AG 104079647 Downstream 63bp 19915 chr9 104079709 104079709 1 + G T UCEC 104079710 + 104079690 104079730 41 CTTCCAAACCCAAGCCTGAGGATCCCCGTGGAGTACCCCTA CTTCCAAACCCAAGCCTGATGATCCCCGTGGAGTACCCCTA < 41bp 0.627450835720477 0.87516991046277 NA NA prediction 0.495438149484585 Functional Gain - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104079710 chr9:104079709 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21456 0 0 0 0 2 PLPPR1 chr9:104079778 5'GT 104079778 Upstream 70bp 19916 chr19 11417292 11417292 1 + G T BLCA 11417293 + 11417273 11417313 41 TCTATAGCTAAAGTGCTGTGGGGTGAATAACTACACAGATT TCTATAGCTAAAGTGCTGTTGGGTGAATAACTACACAGATT < 41bp 0.417357738490214 0.747711871331252 NA NA prediction 0.495423742662505 Functional Gain - TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11417293 chr19:11417292 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_21458 0 0 0 0 2 TSPAN16 chr19:11417247 3'AG 11417247 Downstream 46bp 19917 chr19 11417292 11417292 1 + G T BLCA 11417293 + 11417273 11417313 41 TCTATAGCTAAAGTGCTGTGGGGTGAATAACTACACAGATT TCTATAGCTAAAGTGCTGTTGGGTGAATAACTACACAGATT < 41bp 0.417357738490214 0.747711871331252 NA NA prediction 0.495423742662505 Functional Gain - TSPAN16 ENSG00000130167 CDS Human protein_coding chr19:11417293 chr19:11417292 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_21458 0 0 0 0 2 TSPAN16 chr19:11417280 3'AG 11417280 Downstream 13bp 19918 chr11 63071614 63071614 1 + G T LUSC 63071615 + 63071595 63071635 41 GTGTGGCTTTGGCATGTCTGGGAATCGGCTGTTCTGCTGCT GTGTGGCTTTGGCATGTCTTGGAATCGGCTGTTCTGCTGCT < 41bp 0.41657776453346 0.747687005681569 NA NA prediction 0.495374011363138 Functional Gain - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63071615 chr11:63071614 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_21461 0 0 0 3 2 SLC22A10 chr11:63071580 3'AG 63071580 Downstream 35bp 19919 chr11 63071614 63071614 1 + G T LUSC 63071615 + 63071595 63071635 41 GTGTGGCTTTGGCATGTCTGGGAATCGGCTGTTCTGCTGCT GTGTGGCTTTGGCATGTCTTGGAATCGGCTGTTCTGCTGCT < 41bp 0.41657776453346 0.747687005681569 NA NA prediction 0.495374011363138 Functional Gain - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63071615 chr11:63071614 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_21461 0 0 0 3 2 SLC22A10 chr11:63071688 5'GT 63071688 Upstream 75bp 19920 chr9 4573941 4573941 1 + G T SARC 4573942 + 4573922 4573962 41 TATTTTGTTCCTGATTGCTGGGAAGATCATAGAAGTTGAAG TATTTTGTTCCTGATTGCTTGGAAGATCATAGAAGTTGAAG < 41bp 0.630545706555599 0.878220850178339 NA NA prediction 0.49535028724548 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4573942 chr9:4573941 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_21462 0 0 0 0 2 SLC1A1 chr9:4573907 3'AG 4573907 Downstream 35bp 19921 chr9 4573941 4573941 1 + G T SARC 4573942 + 4573922 4573962 41 TATTTTGTTCCTGATTGCTGGGAAGATCATAGAAGTTGAAG TATTTTGTTCCTGATTGCTTGGAAGATCATAGAAGTTGAAG < 41bp 0.630545706555599 0.878220850178339 NA NA prediction 0.49535028724548 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4573942 chr9:4573941 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_21462 0 0 0 0 2 SLC1A1 chr9:4574014 5'GT 4574014 Upstream 74bp 19922 chr2 64109761 64109761 1 + G T SARC 64109762 + 64109742 64109782 41 GGAATGAGAATACCTTTCTGGATCTGACTGTTCAGCAAATT GGAATGAGAATACCTTTCTTGATCTGACTGTTCAGCAAATT < 41bp 0.417595409762548 0.747649288120957 NA NA prediction 0.495298576241915 Functional Gain - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64109762 chr2:64109761 synonymous SNV . 0 20 hm7G_associated_SNPs_21463 0 0 1 0 1 UGP2 chr2:64109785 5'GT 64109785 Upstream 25bp 19923 chr14 105394159 105394159 1 + G T KICH 105394160 + 105394140 105394180 41 ATGGCTCCAGCCCAGCTTGGGAGCCCCTGGAAGCAGAGGCC ATGGCTCCAGCCCAGCTTGTGAGCCCCTGGAAGCAGAGGCC < 41bp 0.411258303251825 0.747645428120979 NA NA prediction 0.495290856241958 Functional Gain - PLD4 ENSG00000166428 CDS Human protein_coding chr14:105394160 chr14:105394159 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_21464 0 0 0 0 1 PLD4 chr14:105394203 5'GT 105394203 Upstream 45bp 19924 chr13 106124904 106124904 1 + G T STAD 106124905 + 106124885 106124925 41 AGCAAAGGAGACAGAAGAAGGAAGAGAGACGGTAACAAGGA AGCAAAGGAGACAGAAGAATGAAGAGAGACGGTAACAAGGA < 41bp 0.600470235461763 0.848103556754293 NA NA prediction 0.49526664258506 Functional Gain - DAOA ENSG00000182346 CDS Human protein_coding chr13:106124905 chr13:106124904 stopgain 0.148 0 20 hm7G_associated_SNPs_21466 0 0 0 0 2 DAOA chr13:106124887 3'AG 106124887 Downstream 18bp 19925 chr13 106124904 106124904 1 + G T STAD 106124905 + 106124885 106124925 41 AGCAAAGGAGACAGAAGAAGGAAGAGAGACGGTAACAAGGA AGCAAAGGAGACAGAAGAATGAAGAGAGACGGTAACAAGGA < 41bp 0.600470235461763 0.848103556754293 NA NA prediction 0.49526664258506 Functional Gain - DAOA ENSG00000182346 CDS Human protein_coding chr13:106124905 chr13:106124904 stopgain 0.148 0 20 hm7G_associated_SNPs_21466 0 0 0 0 2 DAOA chr13:106124892 3'AG 106124892 Downstream 13bp 19926 chr7 30963076 30963076 1 + G T GBM 30963077 + 30963057 30963097 41 GTTCCTAGATTTTCTGGGTGGGGCCATTCATCGGGGGAGCC GTTCCTAGATTTTCTGGGTTGGGCCATTCATCGGGGGAGCC < 41bp 0.620667698702635 0.868299562226319 NA NA prediction 0.495263727047367 Functional Gain - AQP1 ENSG00000240583;ENSG00000250424 CDS Human other chr7:30963077 chr7:30963076 synonymous SNV . 0 20 hm7G_associated_SNPs_21467 0 0 1 0 1 AQP1 chr7:30963065 3'AG 30963065 Downstream 12bp 19927 chr17 3385047 3385047 1 + G T COAD 3385048 + 3385028 3385068 41 GGTGCACTCTTATTCTTGAGGATTCCAGGAATAACTTTTTA GGTGCACTCTTATTCTTGATGATTCCAGGAATAACTTTTTA < 41bp 0.601527941185558 0.849154682522224 NA NA prediction 0.495253482673331 Functional Gain - ASPA ENSG00000108381 CDS Human protein_coding chr17:3385048 chr17:3385047 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_21469 0 0 0 0 1 ASPA chr17:3385092 5'GT 3385092 Upstream 46bp 19928 chr6 168434623 168434623 1 + G T LUAD 168434624 + 168434604 168434644 41 AAAGAGCTATACCATGCTGGGACGCCATTCGGACGACGGCC AAAGAGCTATACCATGCTGTGACGCCATTCGGACGACGGCC < 41bp 0.64209708555416 0.889723704096653 NA NA prediction 0.495253237084985 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168434624 chr6:168434623 stopgain 0.308 1 20 hm7G_associated_SNPs_21470 0 0 0 0 2 KIF25 chr6:168434562 3'AG 168434562 Downstream 62bp 19929 chr6 168434623 168434623 1 + G T LUAD 168434624 + 168434604 168434644 41 AAAGAGCTATACCATGCTGGGACGCCATTCGGACGACGGCC AAAGAGCTATACCATGCTGTGACGCCATTCGGACGACGGCC < 41bp 0.64209708555416 0.889723704096653 NA NA prediction 0.495253237084985 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168434624 chr6:168434623 stopgain 0.308 1 20 hm7G_associated_SNPs_21470 0 0 0 0 2 KIF25 chr6:168434711 5'GT 168434711 Upstream 89bp 19930 chr2 32341274 32341274 1 + G T LUAD 32341275 + 32341255 32341295 41 GTTATTCTTCCTTCTCTGAGGCCTGAGGTAAGAACTTTATA GTTATTCTTCCTTCTCTGATGCCTGAGGTAAGAACTTTATA < 41bp 0.431832305441294 0.747622571140658 NA NA prediction 0.495245142281316 Functional Gain - SPAST ENSG00000021574 CDS Human protein_coding chr2:32341275 chr2:32341274 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_21471 0 0 1 0 2 SPAST chr2:32341188 3'AG 32341188 Downstream 87bp 19931 chr2 32341274 32341274 1 + G T LUAD 32341275 + 32341255 32341295 41 GTTATTCTTCCTTCTCTGAGGCCTGAGGTAAGAACTTTATA GTTATTCTTCCTTCTCTGATGCCTGAGGTAAGAACTTTATA < 41bp 0.431832305441294 0.747622571140658 NA NA prediction 0.495245142281316 Functional Gain - SPAST ENSG00000021574 CDS Human protein_coding chr2:32341275 chr2:32341274 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_21471 0 0 1 0 2 SPAST chr2:32341281 5'GT 32341281 Upstream 8bp 19932 chr7 55266410 55266410 1 + G T LUAD 55266411 + 55266391 55266431 41 TCTTGCTTCATCCTCTCAGGGGTGACTGTTTGGGAGTTGAT TCTTGCTTCATCCTCTCAGTGGTGACTGTTTGGGAGTTGAT < 41bp 0.420739309274471 0.747581528173345 NA NA prediction 0.495163056346689 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55266411 chr7:55266410 nonsynonymous SNV 0.067 5 20 hm7G_associated_SNPs_21474 0 0 0 0 1 EGFR chr7:55266410 3'AG 55266410 Downstream 1bp 19933 chr18 59174718 59174718 1 + G T UCEC 59174719 + 59174699 59174739 41 AGATGAAATATACTATTGTGGATGGAGATGGTGCAGATGCC AGATGAAATATACTATTGTTGATGGAGATGGTGCAGATGCC < 41bp 0.626936452622836 0.874505618711696 NA NA prediction 0.49513833217772 Functional Gain - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59174719 chr18:59174718 synonymous SNV . 0 20 hm7G_associated_SNPs_21475 0 0 0 0 1 CDH20 chr18:59174793 5'GT 59174793 Upstream 76bp 19934 chr12 130839155 130839155 1 + G T LUAD 130839156 + 130839136 130839176 41 AAGAGAAGGCGGGGCCCTGGGGGGACACTGCCAGGGCCTGC AAGAGAAGGCGGGGCCCTGTGGGGACACTGCCAGGGCCTGC < 41bp 0.635292603326854 0.882859104127955 NA NA prediction 0.495133001602201 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130839156 chr12:130839155 nonsynonymous SNV 0.281 0 20 hm7G_associated_SNPs_21476 0 0 0 0 2 PIWIL1 chr12:130839082 3'AG 130839082 Downstream 74bp 19935 chr12 130839155 130839155 1 + G T LUAD 130839156 + 130839136 130839176 41 AAGAGAAGGCGGGGCCCTGGGGGGACACTGCCAGGGCCTGC AAGAGAAGGCGGGGCCCTGTGGGGACACTGCCAGGGCCTGC < 41bp 0.635292603326854 0.882859104127955 NA NA prediction 0.495133001602201 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130839156 chr12:130839155 nonsynonymous SNV 0.281 0 20 hm7G_associated_SNPs_21476 0 0 0 0 2 PIWIL1 chr12:130839208 5'GT 130839208 Upstream 54bp 19936 chr6 142741048 142741048 1 + G T LUSC 142741049 + 142741029 142741069 41 ACATTGCCATGTTCATTGTGGTAATGGTGCAGATCTGTGGG ACATTGCCATGTTCATTGTTGTAATGGTGCAGATCTGTGGG < 41bp 0.424998278153214 0.747560616848799 NA NA prediction 0.495121233697599 Functional Gain - ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142741049 chr6:142741048 synonymous SNV . 0 20 hm7G_associated_SNPs_21477 0 0 1 0 1 ADGRG6 chr6:142740958 3'AG 142740958 Downstream 91bp 19937 chr13 31531074 31531074 1 + G T LUSC 31531075 + 31531055 31531095 41 CTAAAGAACTGCCTCCCTTGGAAAATCCCGGCTTCAATGAA CTAAAGAACTGCCTCCCTTTGAAAATCCCGGCTTCAATGAA < 41bp 0.428974490995162 0.747558513476095 NA NA prediction 0.49511702695219 Functional Gain - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31531075 chr13:31531074 nonsynonymous SNV 0.100 0 20 hm7G_associated_SNPs_21479 0 0 0 0 2 TEX26 chr13:31531010 3'AG 31531010 Downstream 65bp 19938 chr13 31531074 31531074 1 + G T LUSC 31531075 + 31531055 31531095 41 CTAAAGAACTGCCTCCCTTGGAAAATCCCGGCTTCAATGAA CTAAAGAACTGCCTCCCTTTGAAAATCCCGGCTTCAATGAA < 41bp 0.428974490995162 0.747558513476095 NA NA prediction 0.49511702695219 Functional Gain - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31531075 chr13:31531074 nonsynonymous SNV 0.100 0 20 hm7G_associated_SNPs_21479 0 0 0 0 2 TEX26 chr13:31531166 5'GT 31531166 Upstream 93bp 19939 chr6 11575731 11575731 1 + G T LUAD 11575732 + 11575712 11575752 41 CTTTGGAAGCGCTGGTATGGGGCGTTGGACAGACTGTACTG CTTTGGAAGCGCTGGTATGTGGCGTTGGACAGACTGTACTG < 41bp 0.450069449419298 0.747548712522782 NA NA prediction 0.495097425045564 Functional Gain - TMEM170B ENSG00000205269 CDS Human protein_coding chr6:11575732 chr6:11575731 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_21480 0 0 1 0 1 TMEM170B chr6:11575664 3'AG 11575664 Downstream 68bp 19940 chr6 43042368 43042368 1 + G T KIRP 43042369 + 43042349 43042389 41 GTCTGTTTCAGGTCTCCCGGGGCCTCAGTGCCAGCACCATG GTCTGTTTCAGGTCTCCCGTGGCCTCAGTGCCAGCACCATG < 41bp 0.409750469416076 0.747506440534983 NA NA prediction 0.495012881069967 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43042369 chr6:43042368 synonymous SNV . 0 20 hm7G_associated_SNPs_21484 0 0 1 0 1 KLC4 chr6:43042360 3'AG 43042360 Downstream 9bp 19941 chr3 122578976 122578976 1 + G T LIHC 122578977 + 122578957 122578997 41 TTCTTCTCCTCCTGTTTTCGGGAGCTACACTGTCATCCACG TTCTTCTCCTCCTGTTTTCTGGAGCTACACTGTCATCCACG < 41bp 0.41830582702237 0.747506160012661 NA NA prediction 0.495012320025322 Functional Gain - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122578977 chr3:122578976 synonymous SNV . 0 20 hm7G_associated_SNPs_21485 0 0 0 0 2 DIRC2 chr3:122578922 3'AG 122578922 Downstream 55bp 19942 chr3 122578976 122578976 1 + G T LIHC 122578977 + 122578957 122578997 41 TTCTTCTCCTCCTGTTTTCGGGAGCTACACTGTCATCCACG TTCTTCTCCTCCTGTTTTCTGGAGCTACACTGTCATCCACG < 41bp 0.41830582702237 0.747506160012661 NA NA prediction 0.495012320025322 Functional Gain - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122578977 chr3:122578976 synonymous SNV . 0 20 hm7G_associated_SNPs_21485 0 0 0 0 2 DIRC2 chr3:122579049 5'GT 122579049 Upstream 74bp 19943 chr2 179463369 179463369 1 + G T UCEC 179463370 + 179463350 179463390 41 TGTCACTTTGGGAAATGGAGGACCAGGAGGGGCTGCAAAGA TGTCACTTTGGGAAATGGATGACCAGGAGGGGCTGCAAAGA < 41bp 0.585157948305641 0.832634129438501 NA NA prediction 0.49495236226572 Functional Gain - TTN ENSG00000155657 CDS Human protein_coding chr2:179463370 chr2:179463369 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21488 0 0 1 0 2 TTN chr2:179463283 3'AG 179463283 Downstream 87bp 19944 chr2 179463369 179463369 1 + G T UCEC 179463370 + 179463350 179463390 41 TGTCACTTTGGGAAATGGAGGACCAGGAGGGGCTGCAAAGA TGTCACTTTGGGAAATGGATGACCAGGAGGGGCTGCAAAGA < 41bp 0.585157948305641 0.832634129438501 NA NA prediction 0.49495236226572 Functional Gain - TTN ENSG00000155657 CDS Human antisense chr2:179463370 chr2:179463369 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21488 0 0 1 0 2 TTN-AS1 chr2:179463400 5'GT 179463400 Upstream 32bp 19945 chr19 41601671 41601671 1 + G T THCA 41601672 + 41601652 41601692 41 CTCTCCTCCTCAGGAAAGCGGTACTGTTTTGGAGAAGGCCT CTCTCCTCCTCAGGAAAGCTGTACTGTTTTGGAGAAGGCCT < 41bp 0.602154915445002 0.849624058455495 NA NA prediction 0.494938286020987 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41601672 chr19:41601671 nonsynonymous SNV 0.964 5 20 hm7G_associated_SNPs_21490 0 0 0 0 1 CYP2A13 chr19:41601665 3'AG 41601665 Downstream 7bp 19946 chr16 3189017 3189017 1 + G T UCEC 3189018 + 3188998 3189038 41 TCCCATTCTATTTCTCCCGGGAAGAATGGGGCACCCTGGAC TCCCATTCTATTTCTCCCGTGAAGAATGGGGCACCCTGGAC < 41bp 0.423714270163262 0.747438173513205 NA NA prediction 0.494876347026409 Functional Gain - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3189018 chr16:3189017 stopgain 0.993 0 20 hm7G_associated_SNPs_21493 0 0 0 0 2 ZNF213 chr16:3188976 3'AG 3188976 Downstream 42bp 19947 chr16 3189017 3189017 1 + G T UCEC 3189018 + 3188998 3189038 41 TCCCATTCTATTTCTCCCGGGAAGAATGGGGCACCCTGGAC TCCCATTCTATTTCTCCCGTGAAGAATGGGGCACCCTGGAC < 41bp 0.423714270163262 0.747438173513205 NA NA prediction 0.494876347026409 Functional Gain - ZNF213 ENSG00000085644 CDS Human protein_coding chr16:3189018 chr16:3189017 stopgain 0.993 0 20 hm7G_associated_SNPs_21493 0 0 0 0 2 ZNF213 chr16:3189099 5'GT 3189099 Upstream 83bp 19948 chr18 28972210 28972210 1 + G T LUSC 28972211 + 28972191 28972231 41 AAGGCACTGATAACTGGTTGGCTCAATATTTAATTCTCTCT AAGGCACTGATAACTGGTTTGCTCAATATTTAATTCTCTCT < 41bp 0.415463355483132 0.74742161335678 NA NA prediction 0.494843226713561 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28972211 chr18:28972210 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_21494 0 0 0 0 2 DSG4 chr18:28972118 3'AG 28972118 Downstream 93bp 19949 chr18 28972210 28972210 1 + G T LUSC 28972211 + 28972191 28972231 41 AAGGCACTGATAACTGGTTGGCTCAATATTTAATTCTCTCT AAGGCACTGATAACTGGTTTGCTCAATATTTAATTCTCTCT < 41bp 0.415463355483132 0.74742161335678 NA NA prediction 0.494843226713561 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28972211 chr18:28972210 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_21494 0 0 0 0 2 DSG4 chr18:28972303 5'GT 28972303 Upstream 94bp 19950 chr2 9614760 9614760 1 + G T STAD 9614761 + 9614741 9614781 41 CCTCGCTTGTTGCTCTTCGGGGACTCCATCACCCAGGTACG CCTCGCTTGTTGCTCTTCGTGGACTCCATCACCCAGGTACG < 41bp 0.429604432668609 0.747421139472386 NA NA prediction 0.494842278944773 Functional Gain - IAH1 ENSG00000134330 CDS Human protein_coding chr2:9614761 chr2:9614760 nonsynonymous SNV 0.970 5 20 hm7G_associated_SNPs_21495 0 0 1 0 1 IAH1 chr2:9614776 5'GT 9614776 Upstream 17bp 19951 chr2 131803019 131803019 1 + G T GBM 131803020 + 131803000 131803040 41 GGTCACAGGGAAGCCCAAAGGTAGGCGGACAGCAGCCCCAC GGTCACAGGGAAGCCCAAATGTAGGCGGACAGCAGCCCCAC < 41bp 0.42402965132642 0.747406505503963 NA NA prediction 0.494813011007927 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131803020 chr2:131803019 nonsynonymous SNV 0.827 0 20 hm7G_associated_SNPs_21497 0 0 0 0 2 ARHGEF4 chr2:131802942 3'AG 131802942 Downstream 78bp 19952 chr2 131803019 131803019 1 + G T GBM 131803020 + 131803000 131803040 41 GGTCACAGGGAAGCCCAAAGGTAGGCGGACAGCAGCCCCAC GGTCACAGGGAAGCCCAAATGTAGGCGGACAGCAGCCCCAC < 41bp 0.42402965132642 0.747406505503963 NA NA prediction 0.494813011007927 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131803020 chr2:131803019 nonsynonymous SNV 0.827 0 20 hm7G_associated_SNPs_21497 0 0 0 0 2 ARHGEF4 chr2:131803019 5'GT 131803019 Upstream 1bp 19953 chr1 26513667 26513667 1 + G T UCEC 26513668 + 26513648 26513688 41 GATCCCCCCAGGATGAGAAGGCTGAGGGCCTCATCAATGTC GATCCCCCCAGGATGAGAATGCTGAGGGCCTCATCAATGTC < 41bp 0.636545180456033 0.883942045318925 NA NA prediction 0.494793729725785 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26513668 chr1:26513667 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_21499 0 0 0 0 2 CNKSR1 chr1:26513659 3'AG 26513659 Downstream 9bp 19954 chr1 26513667 26513667 1 + G T UCEC 26513668 + 26513648 26513688 41 GATCCCCCCAGGATGAGAAGGCTGAGGGCCTCATCAATGTC GATCCCCCCAGGATGAGAATGCTGAGGGCCTCATCAATGTC < 41bp 0.636545180456033 0.883942045318925 NA NA prediction 0.494793729725785 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26513668 chr1:26513667 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_21499 0 0 0 0 2 CNKSR1 chr1:26513732 5'GT 26513732 Upstream 66bp 19955 chrX 48678626 48678626 1 + G T LUAD 48678627 + 48678607 48678647 41 ACCTCACCCACCTGCTGATGGGCCTTGCCAGTGGCCGCATT ACCTCACCCACCTGCTGATTGGCCTTGCCAGTGGCCGCATT < 41bp 0.406943919682592 0.747376584037206 NA NA prediction 0.494753168074413 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48678627 chrX:48678626 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21500 0 0 1 0 1 HDAC6 chrX:48678662 5'GT 48678662 Upstream 37bp 19956 chr10 116046244 116046244 1 + G T HNSC 116046245 + 116046225 116046265 41 CAAATCCCTGAGCTGCAGGGGAAGCTGTGCAGCCGGCAGCG CAAATCCCTGAGCTGCAGGTGAAGCTGTGCAGCCGGCAGCG < 41bp 0.405004415416345 0.747354721281457 NA NA prediction 0.494709442562914 Functional Gain - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116046245 chr10:116046244 nonsynonymous SNV 0.468 0 20 hm7G_associated_SNPs_21505 0 0 0 0 1 VWA2 chr10:116046270 5'GT 116046270 Upstream 27bp 19957 chr8 121275110 121275110 1 + G T SARC 121275111 + 121275091 121275131 41 TTTGTTTTTATTATAGATAGGCAAAAGCAAGAATCCACTGT TTTGTTTTTATTATAGATATGCAAAAGCAAGAATCCACTGT < 41bp 0.608611222649435 0.855965218426521 NA NA prediction 0.494707991554171 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121275111 chr8:121275110 nonsynonymous SNV 0.735 0 20 hm7G_associated_SNPs_21506 0 0 0 0 1 COL14A1 chr8:121275107 3'AG 121275107 Downstream 4bp 19958 chr3 14518771 14518771 1 + G T PAAD 14518772 + 14518752 14518792 41 CTTTACCCATCCTTCCTAAGGAAGGGTTATCGTCGGGAAAT CTTTACCCATCCTTCCTAATGAAGGGTTATCGTCGGGAAAT < 41bp 0.415484273347648 0.747339624679963 NA NA prediction 0.494679249359926 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14518772 chr3:14518771 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21508 0 0 1 0 2 SLC6A6 chr3:14518713 3'AG 14518713 Downstream 59bp 19959 chr3 14518771 14518771 1 + G T PAAD 14518772 + 14518752 14518792 41 CTTTACCCATCCTTCCTAAGGAAGGGTTATCGTCGGGAAAT CTTTACCCATCCTTCCTAATGAAGGGTTATCGTCGGGAAAT < 41bp 0.415484273347648 0.747339624679963 NA NA prediction 0.494679249359926 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14518772 chr3:14518771 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21508 0 0 1 0 2 SLC6A6 chr3:14518850 5'GT 14518850 Upstream 80bp 19960 chr14 104158736 104158736 1 + G T rs77481241 104158737 + 104158717 104158757 41 GAATGTCCTTAACGTGGGTGGCAAGGCTGCTGAAGATCGCT GAATGTCCTTAACGTGGGTTGCAAGGCTGCTGAAGATCGCT < 41bp 0.420350580638491 0.747330145729267 NA NA prediction 0.494660291458533 Functional Gain - KLC1 ENSG00000126214 CDS Human protein_coding chr14:104158737 chr14:104158736 nonsynonymous SNV 0.801 1 20 hm7G_associated_SNPs_21509 0 0 1 0 2 KLC1 chr14:104158696 3'AG 104158696 Downstream 41bp 19961 chr14 104158736 104158736 1 + G T rs77481241 104158737 + 104158717 104158757 41 GAATGTCCTTAACGTGGGTGGCAAGGCTGCTGAAGATCGCT GAATGTCCTTAACGTGGGTTGCAAGGCTGCTGAAGATCGCT < 41bp 0.420350580638491 0.747330145729267 NA NA prediction 0.494660291458533 Functional Gain - KLC1 ENSG00000126214 CDS Human protein_coding chr14:104158737 chr14:104158736 nonsynonymous SNV 0.801 1 20 hm7G_associated_SNPs_21509 0 0 1 0 2 KLC1 chr14:104158762 5'GT 104158762 Upstream 27bp 19962 chr1 160094133 160094133 1 + G T UCEC 160094134 + 160094114 160094154 41 AGATGCAGATCAACGCAGAGGAAGTGGTGGTGGGAGACCTG AGATGCAGATCAACGCAGATGAAGTGGTGGTGGGAGACCTG < 41bp 0.643835053079355 0.891162222657603 NA NA prediction 0.494654339156497 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160094134 chr1:160094133 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_21510 0 0 0 0 2 ATP1A2 chr1:160094086 3'AG 160094086 Downstream 48bp 19963 chr1 160094133 160094133 1 + G T UCEC 160094134 + 160094114 160094154 41 AGATGCAGATCAACGCAGAGGAAGTGGTGGTGGGAGACCTG AGATGCAGATCAACGCAGATGAAGTGGTGGTGGGAGACCTG < 41bp 0.643835053079355 0.891162222657603 NA NA prediction 0.494654339156497 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160094134 chr1:160094133 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_21510 0 0 0 0 2 ATP1A2 chr1:160094220 5'GT 160094220 Upstream 88bp 19964 chr2 7035937 7035937 1 + G T LUSC 7035938 + 7035918 7035958 41 CTGAACTGTAGAAAGGGACGGAAGGACCCTTCCAAGTCCAT CTGAACTGTAGAAAGGGACTGAAGGACCCTTCCAAGTCCAT < 41bp 0.596916870362105 0.844237440362955 NA NA prediction 0.494641140001701 Functional Gain - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7035938 chr2:7035937 nonsynonymous SNV 0.849 2 20 hm7G_associated_SNPs_21512 0 0 0 0 1 RSAD2 chr2:7035909 3'AG 7035909 Downstream 29bp 19965 chr12 101005823 101005823 1 + G T LUAD 101005824 + 101005804 101005844 41 TAAGAAAGATGCTGCATCAGGTTCATTCTTTGCTCGGGACA TAAGAAAGATGCTGCATCATGTTCATTCTTTGCTCGGGACA < 41bp 0.624474040515449 0.871789301398388 NA NA prediction 0.494630521765878 Functional Gain - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101005824 chr12:101005823 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_21513 0 0 1 0 2 GAS2L3 chr12:101005778 3'AG 101005778 Downstream 46bp 19966 chr12 101005823 101005823 1 + G T LUAD 101005824 + 101005804 101005844 41 TAAGAAAGATGCTGCATCAGGTTCATTCTTTGCTCGGGACA TAAGAAAGATGCTGCATCATGTTCATTCTTTGCTCGGGACA < 41bp 0.624474040515449 0.871789301398388 NA NA prediction 0.494630521765878 Functional Gain - GAS2L3 ENSG00000139354 CDS Human protein_coding chr12:101005824 chr12:101005823 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_21513 0 0 1 0 2 GAS2L3 chr12:101005919 5'GT 101005919 Upstream 97bp 19967 chr11 47260393 47260393 1 + G T UCEC 47260394 + 47260374 47260414 41 CAGGAGGAAGCCAGGACACGGAAGTGAGAGACACTAAAGAA CAGGAGGAAGCCAGGACACTGAAGTGAGAGACACTAAAGAA < 41bp 0.610858594926776 0.85814711789916 NA NA prediction 0.494577045944769 Functional Gain - DDB2 ENSG00000134574 CDS Human protein_coding chr11:47260394 chr11:47260393 nonsynonymous SNV 0.117 0 20 hm7G_associated_SNPs_21517 0 0 1 0 1 DDB2 chr11:47260351 3'AG 47260351 Downstream 43bp 19968 chr1 29611311 29611311 1 + G T UCEC 29611312 + 29611292 29611332 41 GGAGATGGGGCTTATCCTGGGCATCTGTGCAGGGGGGCTTG GGAGATGGGGCTTATCCTGTGCATCTGTGCAGGGGGGCTTG < 41bp 0.636697120704151 0.883980740162154 NA NA prediction 0.494567238916005 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29611312 chr1:29611311 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21518 0 0 1 0 1 PTPRU chr1:29611243 3'AG 29611243 Downstream 69bp 19969 chrX 155119158 155119158 1 + G T LUAD 155119159 + 155119139 155119179 41 CTTTTTGCTGTTGTTGCCAGGGGGACCACTATCCTTGCCAA CTTTTTGCTGTTGTTGCCATGGGGACCACTATCCTTGCCAA < 41bp 0.434502342410349 0.747274357927076 NA NA prediction 0.494548715854152 Functional Gain - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155119159 chrX:155119158 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21519 0 0 1 0 2 VAMP7 chrX:155119121 3'AG 155119121 Downstream 38bp 19970 chrX 155119158 155119158 1 + G T LUAD 155119159 + 155119139 155119179 41 CTTTTTGCTGTTGTTGCCAGGGGGACCACTATCCTTGCCAA CTTTTTGCTGTTGTTGCCATGGGGACCACTATCCTTGCCAA < 41bp 0.434502342410349 0.747274357927076 NA NA prediction 0.494548715854152 Functional Gain - VAMP7 ENSG00000124333 CDS Human protein_coding chrX:155119159 chrX:155119158 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21519 0 0 1 0 2 VAMP7 chrX:155119210 5'GT 155119210 Upstream 53bp 19971 chr1 42620482 42620482 1 + G T LUSC 42620483 + 42620463 42620503 41 ACCACCCTGCTCTGCCTCAGGACCTTCAGCCTGTCTGCGCC ACCACCCTGCTCTGCCTCATGACCTTCAGCCTGTCTGCGCC < 41bp 0.409953549826612 0.747266084218197 NA NA prediction 0.494532168436393 Functional Gain - GUCA2B ENSG00000044012 CDS Human protein_coding chr1:42620483 chr1:42620482 nonsynonymous SNV 0.323 0 20 hm7G_associated_SNPs_21520 0 0 0 0 1 GUCA2B chr1:42620537 5'GT 42620537 Upstream 56bp 19972 chr3 100025312 100025312 1 + G T UCEC 100025313 + 100025293 100025333 41 ACCTGGCAGACATTAATGTGGATGGACCAGAAAATGGATAT ACCTGGCAGACATTAATGTTGATGGACCAGAAAATGGATAT < 41bp 0.624038742589243 0.871295708528183 NA NA prediction 0.49451393187788 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100025313 chr3:100025312 synonymous SNV . 0 20 hm7G_associated_SNPs_21521 0 0 1 0 2 TBC1D23 chr3:100025281 3'AG 100025281 Downstream 32bp 19973 chr3 100025312 100025312 1 + G T UCEC 100025313 + 100025293 100025333 41 ACCTGGCAGACATTAATGTGGATGGACCAGAAAATGGATAT ACCTGGCAGACATTAATGTTGATGGACCAGAAAATGGATAT < 41bp 0.624038742589243 0.871295708528183 NA NA prediction 0.49451393187788 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100025313 chr3:100025312 synonymous SNV . 0 20 hm7G_associated_SNPs_21521 0 0 1 0 2 TBC1D23 chr3:100025387 5'GT 100025387 Upstream 76bp 19974 chr6 52530173 52530173 1 + G T SARC 52530174 + 52530154 52530194 41 CAACACTGGAAGACCAAGAGGGTTGACGTTTGCTATCTTGA CAACACTGGAAGACCAAGATGGTTGACGTTTGCTATCTTGA < 41bp 0.440667296120111 0.747239042049514 NA NA prediction 0.494478084099027 Functional Gain - LOC730101 ENSG00000216775 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:52530174 chr6:52530173 . . 0 20 hm7G_associated_SNPs_21522 0 0 1 0 1 LOC730101 chr6:52530217 5'GT 52530217 Upstream 45bp 19975 chr21 45706582 45706582 1 + G T LUSC 45706583 + 45706563 45706603 41 AACCTGGAGCGCTATGGCCGGCTGCAGCCCATCCTGGACAG AACCTGGAGCGCTATGGCCTGCTGCAGCCCATCCTGGACAG < 41bp 0.638037078415069 0.885271428908319 NA NA prediction 0.4944687009865 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45706583 chr21:45706582 nonsynonymous SNV 0.912 4 20 hm7G_associated_SNPs_21523 0 0 0 0 1 AIRE chr21:45706614 5'GT 45706614 Upstream 33bp 19976 chr16 31308973 31308973 1 + G T UCEC 31308974 + 31308954 31308994 41 CGTGTGCCCCTTGCCCAGGGGGGTGAGTGGCAATGGGACCT CGTGTGCCCCTTGCCCAGGTGGGTGAGTGGCAATGGGACCT < 41bp 0.409800979959346 0.747223937106665 NA NA prediction 0.494447874213331 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31308974 chr16:31308973 nonsynonymous SNV 0.421 3 20 hm7G_associated_SNPs_21525 0 0 0 0 1 ITGAM chr16:31308975 5'GT 31308975 Upstream 3bp 19977 chr15 29078433 29078433 1 + G T rs546711525 29078434 + 29078414 29078454 41 ACTTGCAGGCCTGAGACCTGGGAGGAAGCTGGAGAAAAGAT ACTTGCAGGCCTGAGACCTTGGAGGAAGCTGGAGAAAAGAT < 41bp 0.626865789934894 0.874072248355307 NA NA prediction 0.494412916840827 Functional Gain - PDCD6IPP2 ENSG00000261377 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:29078434 chr15:29078433 . . 0 20 hm7G_associated_SNPs_21527 0 0 1 0 2 PDCD6IPP2 chr15:29078422 3'AG 29078422 Downstream 12bp 19978 chr15 29078433 29078433 1 + G T rs546711525 29078434 + 29078414 29078454 41 ACTTGCAGGCCTGAGACCTGGGAGGAAGCTGGAGAAAAGAT ACTTGCAGGCCTGAGACCTTGGAGGAAGCTGGAGAAAAGAT < 41bp 0.626865789934894 0.874072248355307 NA NA prediction 0.494412916840827 Functional Gain - PDCD6IPP2 ENSG00000261377 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:29078434 chr15:29078433 . . 0 20 hm7G_associated_SNPs_21527 0 0 1 0 2 PDCD6IPP2 chr15:29078524 5'GT 29078524 Upstream 92bp 19979 chr20 30919105 30919105 1 + G T LUAD 30919106 + 30919086 30919126 41 GCTTTATCCACAGTCTCGGGGGCTGGTTCCAAAGTAAAGCC GCTTTATCCACAGTCTCGGTGGCTGGTTCCAAAGTAAAGCC < 41bp 0.426257027580126 0.747183042570555 NA NA prediction 0.494366085141109 Functional Gain - KIF3B ENSG00000101350 CDS Human protein_coding chr20:30919106 chr20:30919105 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21531 0 0 1 0 1 KIF3B chr20:30919026 3'AG 30919026 Downstream 80bp 19980 chr2 63832446 63832446 1 + G T STAD 63832447 + 63832427 63832467 41 GTGGCGCTGCTGTCATCAAGGCTCGAAAACTATCCAGTGCC GTGGCGCTGCTGTCATCAATGCTCGAAAACTATCCAGTGCC < 41bp 0.629261417430822 0.876441636605177 NA NA prediction 0.494360438348709 Functional Gain - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63832447 chr2:63832446 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21533 0 0 1 0 2 MDH1 chr2:63832414 3'AG 63832414 Downstream 33bp 19981 chr2 63832446 63832446 1 + G T STAD 63832447 + 63832427 63832467 41 GTGGCGCTGCTGTCATCAAGGCTCGAAAACTATCCAGTGCC GTGGCGCTGCTGTCATCAATGCTCGAAAACTATCCAGTGCC < 41bp 0.629261417430822 0.876441636605177 NA NA prediction 0.494360438348709 Functional Gain - MDH1 ENSG00000014641 CDS Human protein_coding chr2:63832447 chr2:63832446 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21533 0 0 1 0 2 MDH1 chr2:63832527 5'GT 63832527 Upstream 82bp 19982 chr5 146975029 146975029 1 + G T rs192123189 146975030 + 146975010 146975050 41 AACAACAAGGCGCCATCTTGGAAGTAGACACCAGGCCCTCA AACAACAAGGCGCCATCTTTGAAGTAGACACCAGGCCCTCA < 41bp 0.435892089466681 0.747175216280594 NA NA prediction 0.494350432561187 Functional Gain - JAKMIP2-AS1 ENSG00000176049 intronic Human protein_coding chr5:146975030 chr5:146975029 . . 0 20 hm7G_associated_SNPs_21534 0 0 0 0 2 JAKMIP2-AS1 chr5:146975003 3'AG 146975003 Downstream 27bp 19983 chr5 146975029 146975029 1 + G T rs192123189 146975030 + 146975010 146975050 41 AACAACAAGGCGCCATCTTGGAAGTAGACACCAGGCCCTCA AACAACAAGGCGCCATCTTTGAAGTAGACACCAGGCCCTCA < 41bp 0.435892089466681 0.747175216280594 NA NA prediction 0.494350432561187 Functional Gain - JAKMIP2-AS1 ENSG00000176049 intronic Human protein_coding chr5:146975030 chr5:146975029 . . 0 20 hm7G_associated_SNPs_21534 0 0 0 0 2 JAKMIP2-AS1 chr5:146975103 5'GT 146975103 Upstream 75bp 19984 chr6 149903684 149903684 1 + G T UCEC 149903685 + 149903665 149903705 41 CATGGTGGTTGGAATTACAGGAGCAGCTGTGGTAATAACCA CATGGTGGTTGGAATTACATGAGCAGCTGTGGTAATAACCA < 41bp 0.615346556532594 0.862521268225845 NA NA prediction 0.494349423386501 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149903685 chr6:149903684 stopgain 0.769 1 20 hm7G_associated_SNPs_21535 0 0 1 0 1 GINM1 chr6:149903739 5'GT 149903739 Upstream 56bp 19985 chr19 41700534 41700534 1 + G T SKCM 41700535 + 41700515 41700555 41 GTTGGGCAGGAGGCTGTGCGGGAGGCCCTGGGAGGTCAGGC GTTGGGCAGGAGGCTGTGCTGGAGGCCCTGGGAGGTCAGGC < 41bp 0.641217567957516 0.888382309288436 NA NA prediction 0.494329482661839 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41700535 chr19:41700534 nonsynonymous SNV 0.119 1 20 hm7G_associated_SNPs_21538 0 0 1 0 2 CYP2S1 chr19:41700449 3'AG 41700449 Downstream 86bp 19986 chr19 41700534 41700534 1 + G T SKCM 41700535 + 41700515 41700555 41 GTTGGGCAGGAGGCTGTGCGGGAGGCCCTGGGAGGTCAGGC GTTGGGCAGGAGGCTGTGCTGGAGGCCCTGGGAGGTCAGGC < 41bp 0.641217567957516 0.888382309288436 NA NA prediction 0.494329482661839 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41700535 chr19:41700534 nonsynonymous SNV 0.119 1 20 hm7G_associated_SNPs_21538 0 0 1 0 2 CYP2S1 chr19:41700614 5'GT 41700614 Upstream 81bp 19987 chr5 78384334 78384334 1 + G T LUAD 78384335 + 78384315 78384355 41 GGGCTCGAAGGGAGTATTGGGAGAATCTGCTGCCAGCTTCA GGGCTCGAAGGGAGTATTGTGAGAATCTGCTGCCAGCTTCA < 41bp 0.445707252480528 0.747158451557091 NA NA prediction 0.494316903114183 Functional Gain - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78384335 chr5:78384334 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_21540 0 0 0 0 1 BHMT2 chr5:78384316 3'AG 78384316 Downstream 19bp 19988 chr3 126255190 126255190 1 + G T SARC 126255191 + 126255171 126255211 41 TGCAGAAGCTCTATGACCTGGATCAGGTAGGTGGACAGACC TGCAGAAGCTCTATGACCTTGATCAGGTAGGTGGACAGACC < 41bp 0.618039216660036 0.865147201535431 NA NA prediction 0.494215969750789 Functional Gain - CHST13 ENSG00000180767 CDS Human protein_coding chr3:126255191 chr3:126255190 synonymous SNV . 0 20 hm7G_associated_SNPs_21542 0 0 1 0 2 CHST13 chr3:126255114 3'AG 126255114 Downstream 77bp 19989 chr3 126255190 126255190 1 + G T SARC 126255191 + 126255171 126255211 41 TGCAGAAGCTCTATGACCTGGATCAGGTAGGTGGACAGACC TGCAGAAGCTCTATGACCTTGATCAGGTAGGTGGACAGACC < 41bp 0.618039216660036 0.865147201535431 NA NA prediction 0.494215969750789 Functional Gain - CHST13 ENSG00000180767 CDS Human protein_coding chr3:126255191 chr3:126255190 synonymous SNV . 0 20 hm7G_associated_SNPs_21542 0 0 1 0 2 CHST13 chr3:126255196 5'GT 126255196 Upstream 7bp 19990 chr10 114428745 114428745 1 + G T COAD 114428746 + 114428726 114428766 41 AGCTCCAGGATTCTGACAGGGATGTTGCGAAGGTAAGAGCA AGCTCCAGGATTCTGACAGTGATGTTGCGAAGGTAAGAGCA < 41bp 0.42633766638796 0.747091291205698 NA NA prediction 0.494182582411396 Functional Gain - VTI1A ENSG00000151532 CDS Human protein_coding chr10:114428746 chr10:114428745 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_21544 0 0 1 0 2 VTI1A chr10:114428696 3'AG 114428696 Downstream 50bp 19991 chr10 114428745 114428745 1 + G T COAD 114428746 + 114428726 114428766 41 AGCTCCAGGATTCTGACAGGGATGTTGCGAAGGTAAGAGCA AGCTCCAGGATTCTGACAGTGATGTTGCGAAGGTAAGAGCA < 41bp 0.42633766638796 0.747091291205698 NA NA prediction 0.494182582411396 Functional Gain - VTI1A ENSG00000151532 CDS Human protein_coding chr10:114428746 chr10:114428745 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_21544 0 0 1 0 2 VTI1A chr10:114428757 5'GT 114428757 Upstream 13bp 19992 chr2 74901714 74901714 1 + G T LUSC 74901715 + 74901695 74901735 41 CAGGGCCTGAGCATGGCCGGGCCTCCAGTGTCCTGCAGGAT CAGGGCCTGAGCATGGCCGTGCCTCCAGTGTCCTGCAGGAT < 41bp 0.390121748232375 0.747070701170137 NA NA prediction 0.494141402340275 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74901715 chr2:74901714 synonymous SNV . 0 20 hm7G_associated_SNPs_21546 0 0 1 0 3 SEMA4F chr2:74901625 3'AG 74901625 Downstream 90bp 19993 chr2 74901714 74901714 1 + G T LUSC 74901715 + 74901695 74901735 41 CAGGGCCTGAGCATGGCCGGGCCTCCAGTGTCCTGCAGGAT CAGGGCCTGAGCATGGCCGTGCCTCCAGTGTCCTGCAGGAT < 41bp 0.390121748232375 0.747070701170137 NA NA prediction 0.494141402340275 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74901715 chr2:74901714 synonymous SNV . 0 20 hm7G_associated_SNPs_21546 0 0 1 0 3 SEMA4F chr2:74901800 5'GT 74901800 Upstream 87bp 19994 chr2 74901714 74901714 1 + G T LUSC 74901715 + 74901695 74901735 41 CAGGGCCTGAGCATGGCCGGGCCTCCAGTGTCCTGCAGGAT CAGGGCCTGAGCATGGCCGTGCCTCCAGTGTCCTGCAGGAT < 41bp 0.390121748232375 0.747070701170137 NA NA prediction 0.494141402340275 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74901715 chr2:74901714 synonymous SNV . 0 20 hm7G_associated_SNPs_21546 0 0 1 0 3 SEMA4F chr2:74901803 5'GT 74901803 Upstream 90bp 19995 chr22 29651318 29651318 1 + G T UCEC 29651319 + 29651299 29651339 41 CTGGAGCTCCTGGCCAGACGGGTCACCCTCCTGGAAGCCAT CTGGAGCTCCTGGCCAGACTGGTCACCCTCCTGGAAGCCAT < 41bp 0.416075582745131 0.747068707280074 NA NA prediction 0.494137414560148 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29651319 chr22:29651318 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_21547 0 0 0 0 2 EMID1 chr22:29651260 3'AG 29651260 Downstream 59bp 19996 chr22 29651318 29651318 1 + G T UCEC 29651319 + 29651299 29651339 41 CTGGAGCTCCTGGCCAGACGGGTCACCCTCCTGGAAGCCAT CTGGAGCTCCTGGCCAGACTGGTCACCCTCCTGGAAGCCAT < 41bp 0.416075582745131 0.747068707280074 NA NA prediction 0.494137414560148 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29651319 chr22:29651318 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_21547 0 0 0 0 2 EMID1 chr22:29651350 5'GT 29651350 Upstream 33bp 19997 chr11 1907994 1907994 1 + G T COAD 1907995 + 1907975 1908015 41 CCCCCAAGCTAGCCCGCCAGGCCTCCATAGAGCTGCCCAGC CCCCCAAGCTAGCCCGCCATGCCTCCATAGAGCTGCCCAGC < 41bp 0.645678759120684 0.892726659101393 NA NA prediction 0.49409579996142 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1907995 chr11:1907994 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_21551 0 0 0 0 1 LSP1 chr11:1907962 3'AG 1907962 Downstream 33bp 19998 chr19 7626160 7626160 1 + G T LUSC 7626161 + 7626141 7626181 41 GACTGCTCGAGGGATGAAGGGGGGTCCCCCGAGGGCGCAAG GACTGCTCGAGGGATGAAGTGGGGTCCCCCGAGGGCGCAAG < 41bp 0.39911500370634 0.747046910097965 NA NA prediction 0.49409382019593 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7626161 chr19:7626160 nonsynonymous SNV 0.067 0 20 hm7G_associated_SNPs_21552 0 0 1 0 2 PNPLA6 chr19:7626094 3'AG 7626094 Downstream 67bp 19999 chr19 7626160 7626160 1 + G T LUSC 7626161 + 7626141 7626181 41 GACTGCTCGAGGGATGAAGGGGGGTCCCCCGAGGGCGCAAG GACTGCTCGAGGGATGAAGTGGGGTCCCCCGAGGGCGCAAG < 41bp 0.39911500370634 0.747046910097965 NA NA prediction 0.49409382019593 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7626161 chr19:7626160 nonsynonymous SNV 0.067 0 20 hm7G_associated_SNPs_21552 0 0 1 0 2 PNPLA6 chr19:7626203 5'GT 7626203 Upstream 44bp 20000 chr9 101608327 101608327 1 + G T LUSC 101608328 + 101608308 101608348 41 CTGAGGGCTGCATTGCTGTGGAAGCAGGAATGGATACCCTT CTGAGGGCTGCATTGCTGTTGAAGCAGGAATGGATACCCTT < 41bp 0.634927783983172 0.88195045641535 NA NA prediction 0.494045344864357 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101608328 chr9:101608327 synonymous SNV . 0 20 hm7G_associated_SNPs_21554 0 0 0 0 2 GALNT12 chr9:101608259 3'AG 101608259 Downstream 69bp 20001 chr9 101608327 101608327 1 + G T LUSC 101608328 + 101608308 101608348 41 CTGAGGGCTGCATTGCTGTGGAAGCAGGAATGGATACCCTT CTGAGGGCTGCATTGCTGTTGAAGCAGGAATGGATACCCTT < 41bp 0.634927783983172 0.88195045641535 NA NA prediction 0.494045344864357 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101608328 chr9:101608327 synonymous SNV . 0 20 hm7G_associated_SNPs_21554 0 0 0 0 2 GALNT12 chr9:101608405 5'GT 101608405 Upstream 79bp 20002 chr16 57449087 57449087 1 + G T UCEC 57449088 + 57449068 57449108 41 CGTGGTACCAGACATCTGAGGACTGCTCCAGGGATGCCATC CGTGGTACCAGACATCTGATGACTGCTCCAGGGATGCCATC < 41bp 0.404131906676645 0.747006783735025 NA NA prediction 0.494013567470049 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57449088 chr16:57449087 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_21556 0 0 0 0 2 CCL17 chr16:57448993 3'AG 57448993 Downstream 95bp 20003 chr16 57449087 57449087 1 + G T UCEC 57449088 + 57449068 57449108 41 CGTGGTACCAGACATCTGAGGACTGCTCCAGGGATGCCATC CGTGGTACCAGACATCTGATGACTGCTCCAGGGATGCCATC < 41bp 0.404131906676645 0.747006783735025 NA NA prediction 0.494013567470049 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57449088 chr16:57449087 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_21556 0 0 0 0 2 CCL17 chr16:57449110 5'GT 57449110 Upstream 24bp 20004 chr11 61505629 61505629 1 + G T UCEC 61505630 + 61505610 61505650 41 TGGCCTCTCTCAGCTGGAAGGCTTCCGCAGACAGCTCCTGG TGGCCTCTCTCAGCTGGAATGCTTCCGCAGACAGCTCCTGG < 41bp 0.642840299172513 0.889842781067723 NA NA prediction 0.49400496379042 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505630 chr11:61505629 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21557 0 0 1 0 2 DAGLA chr11:61505607 3'AG 61505607 Downstream 23bp 20005 chr11 61505629 61505629 1 + G T UCEC 61505630 + 61505610 61505650 41 TGGCCTCTCTCAGCTGGAAGGCTTCCGCAGACAGCTCCTGG TGGCCTCTCTCAGCTGGAATGCTTCCGCAGACAGCTCCTGG < 41bp 0.642840299172513 0.889842781067723 NA NA prediction 0.49400496379042 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505630 chr11:61505629 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21557 0 0 1 0 2 DAGLA chr11:61505679 5'GT 61505679 Upstream 51bp 20006 chr17 56327910 56327910 1 + G T LUAD 56327911 + 56327891 56327931 41 TTGCCCCTGACACCGAGCTGGGGAGTAGCGAGTACTCCAAA TTGCCCCTGACACCGAGCTTGGGAGTAGCGAGTACTCCAAA < 41bp 0.406058040669126 0.746980281251064 NA NA prediction 0.493960562502129 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56327911 chr17:56327910 synonymous SNV . 0 20 hm7G_associated_SNPs_21558 0 0 0 0 1 LPO chr17:56327982 5'GT 56327982 Upstream 73bp 20007 chr6 64401633 64401633 1 + G T GBM 64401634 + 64401614 64401654 41 TTCTGTTTTCCAGGTTTATGGTTGGCTGTGGGAGATGTGAT TTCTGTTTTCCAGGTTTATTGTTGGCTGTGGGAGATGTGAT < 41bp 0.430266974470755 0.746972987100021 NA NA prediction 0.493945974200042 Functional Gain - PHF3 ENSG00000118482 CDS Human protein_coding chr6:64401634 chr6:64401633 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21560 0 0 1 0 1 PHF3 chr6:64401627 3'AG 64401627 Downstream 7bp 20008 chr5 14608872 14608872 1 + G T THYM 14608873 + 14608853 14608893 41 TTAGTGGACTGAATTTAATGGCATTAGAGATTATCACAAGA TTAGTGGACTGAATTTAATTGCATTAGAGATTATCACAAGA < 41bp 0.430165252367515 0.746962488838943 NA NA prediction 0.493924977677886 Functional Gain - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14608873 chr5:14608872 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_21561 0 0 0 0 1 FAM105A chr5:14608857 3'AG 14608857 Downstream 16bp 20009 chr15 34638223 34638223 1 + G T LUAD 34638224 + 34638204 34638244 41 TGCCCAAACCTGAGAGGATGGCTTCAGATGGAGGTAAGTCT TGCCCAAACCTGAGAGGATTGCTTCAGATGGAGGTAAGTCT < 41bp 0.63368294676798 0.880637594206453 NA NA prediction 0.493909294876947 Functional Gain - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34638224 chr15:34638223 nonsynonymous SNV 0.837 0 20 hm7G_associated_SNPs_21563 0 0 0 0 2 NUTM1 chr15:34638143 3'AG 34638143 Downstream 81bp 20010 chr15 34638223 34638223 1 + G T LUAD 34638224 + 34638204 34638244 41 TGCCCAAACCTGAGAGGATGGCTTCAGATGGAGGTAAGTCT TGCCCAAACCTGAGAGGATTGCTTCAGATGGAGGTAAGTCT < 41bp 0.63368294676798 0.880637594206453 NA NA prediction 0.493909294876947 Functional Gain - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34638224 chr15:34638223 nonsynonymous SNV 0.837 0 20 hm7G_associated_SNPs_21563 0 0 0 0 2 NUTM1 chr15:34638236 5'GT 34638236 Upstream 14bp 20011 chr9 75775223 75775223 1 + G T GBM 75775224 + 75775204 75775244 41 CCCTTACAGGTCACCTTGAGGAGGTTGTTTTAGCTCTGCTA CCCTTACAGGTCACCTTGATGAGGTTGTTTTAGCTCTGCTA < 41bp 0.416220157557115 0.746935140330967 NA NA prediction 0.493870280661933 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75775224 chr9:75775223 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_21565 0 0 1 0 2 ANXA1 chr9:75775179 3'AG 75775179 Downstream 45bp 20012 chr9 75775223 75775223 1 + G T GBM 75775224 + 75775204 75775244 41 CCCTTACAGGTCACCTTGAGGAGGTTGTTTTAGCTCTGCTA CCCTTACAGGTCACCTTGATGAGGTTGTTTTAGCTCTGCTA < 41bp 0.416220157557115 0.746935140330967 NA NA prediction 0.493870280661933 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75775224 chr9:75775223 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_21565 0 0 1 0 2 ANXA1 chr9:75775292 5'GT 75775292 Upstream 70bp 20013 chr1 175067501 175067501 1 + G T GBM 175067502 + 175067482 175067522 41 AAAAACCTGGTGACTGACCGGGTGACAGAGAATATGGCCAC AAAAACCTGGTGACTGACCTGGTGACAGAGAATATGGCCAC < 41bp 0.613689967276467 0.860619686349751 NA NA prediction 0.493859438146568 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175067502 chr1:175067501 nonsynonymous SNV 0.939 0 20 hm7G_associated_SNPs_21566 0 0 0 0 1 TNN chr1:175067468 3'AG 175067468 Downstream 34bp 20014 chr3 16260950 16260950 1 + G T STAD 16260951 + 16260931 16260971 41 GAACGCTTGCAGCTGCAAAGGAGACTGGGTTGTCGGACATT GAACGCTTGCAGCTGCAAATGAGACTGGGTTGTCGGACATT < 41bp 0.414288358836204 0.746914450601154 NA NA prediction 0.493828901202307 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16260951 chr3:16260950 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_21567 0 0 0 0 1 GALNT15 chr3:16260910 3'AG 16260910 Downstream 41bp 20015 chr4 44699439 44699439 1 + G T UCEC 44699440 + 44699420 44699460 41 TACAGTGTGAAAGCCTATAGGAAAAACGTTTTGGCAAAATG TACAGTGTGAAAGCCTATATGAAAAACGTTTTGGCAAAATG < 41bp 0.601376530143261 0.848273429419778 NA NA prediction 0.493793798553032 Functional Gain - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44699440 chr4:44699439 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_21569 0 0 0 0 1 GUF1 chr4:44699461 5'GT 44699461 Upstream 23bp 20016 chr9 102607028 102607028 1 + G T LUSC 102607029 + 102607009 102607049 41 ATTGATGTATCCAGAAGCTGGGCAGAAAAGATTCCGGGATT ATTGATGTATCCAGAAGCTTGGCAGAAAAGATTCCGGGATT < 41bp 0.631433210999498 0.878329208067644 NA NA prediction 0.493791994136291 Functional Gain - NR4A3 ENSG00000119508 CDS Human protein_coding chr9:102607029 chr9:102607028 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21570 0 0 1 0 1 NR4A3 chr9:102606931 3'AG 102606931 Downstream 98bp 20017 chr3 14803078 14803078 1 + G T UCEC 14803079 + 14803059 14803099 41 AGATCTTCCGGTCTCAACAGGATTACAAGATGGGCTACTTC AGATCTTCCGGTCTCAACATGATTACAAGATGGGCTACTTC < 41bp 0.630954331699065 0.877844882086078 NA NA prediction 0.493781100774028 Functional Gain - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14803079 chr3:14803078 nonsynonymous SNV 0.759 0 20 hm7G_associated_SNPs_21571 0 0 0 0 2 C3orf20 chr3:14802980 3'AG 14802980 Downstream 99bp 20018 chr3 14803078 14803078 1 + G T UCEC 14803079 + 14803059 14803099 41 AGATCTTCCGGTCTCAACAGGATTACAAGATGGGCTACTTC AGATCTTCCGGTCTCAACATGATTACAAGATGGGCTACTTC < 41bp 0.630954331699065 0.877844882086078 NA NA prediction 0.493781100774028 Functional Gain - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14803079 chr3:14803078 nonsynonymous SNV 0.759 0 20 hm7G_associated_SNPs_21571 0 0 0 0 2 C3orf20 chr3:14803122 5'GT 14803122 Upstream 45bp 20019 chr12 58019389 58019389 1 + G T SARC 58019390 + 58019370 58019410 41 GTGCAGGGGACACTGACCCGGGTAGGACTCCTGGACAGGGT GTGCAGGGGACACTGACCCTGGTAGGACTCCTGGACAGGGT < 41bp 0.61120994283885 0.858092620368666 NA NA prediction 0.493765355059632 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58019390 chr12:58019389 nonsynonymous SNV 0.971 2 20 hm7G_associated_SNPs_21572 0 0 0 0 1 SLC26A10 chr12:58019365 3'AG 58019365 Downstream 25bp 20020 chr1 210411457 210411457 1 + G T LUAD 210411458 + 210411438 210411478 41 GCTCCTTTGCAGGGAGACCGGGGAGCTGGTCCCCCACTGGC GCTCCTTTGCAGGGAGACCTGGGAGCTGGTCCCCCACTGGC < 41bp 0.635014018437624 0.881893956243576 NA NA prediction 0.493759875611904 Functional Gain - SERTAD4 ENSG00000082497 CDS Human protein_coding chr1:210411458 chr1:210411457 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21573 0 0 1 0 1 SERTAD4 chr1:210411480 5'GT 210411480 Upstream 24bp 20021 chr12 3029930 3029930 1 + G T LUAD 3029931 + 3029911 3029951 41 ATATCGCTTTTTTCCCAGAGGCTACTACTTGAGAAGAGGCA ATATCGCTTTTTTCCCAGATGCTACTACTTGAGAAGAGGCA < 41bp 0.631404146025504 0.87828026662514 NA NA prediction 0.493752241199272 Functional Gain - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3029931 chr12:3029930 nonsynonymous SNV 0.073 5 20 hm7G_associated_SNPs_21574 0 0 1 3 1 TULP3 chr12:3029929 3'AG 3029929 Downstream 2bp 20022 chr17 65733720 65733720 1 + G T UCEC 65733721 + 65733701 65733741 41 CATTGGGGACACAGTAACAGGACTTCTGGAAAGGTGTAAAG CATTGGGGACACAGTAACATGACTTCTGGAAAGGTGTAAAG < 41bp 0.421282635807583 0.746850722582178 NA NA prediction 0.493701445164356 Functional Gain - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65733721 chr17:65733720 stopgain 0.520 0 20 hm7G_associated_SNPs_21577 0 0 1 0 2 NOL11 chr17:65733624 3'AG 65733624 Downstream 97bp 20023 chr17 65733720 65733720 1 + G T UCEC 65733721 + 65733701 65733741 41 CATTGGGGACACAGTAACAGGACTTCTGGAAAGGTGTAAAG CATTGGGGACACAGTAACATGACTTCTGGAAAGGTGTAAAG < 41bp 0.421282635807583 0.746850722582178 NA NA prediction 0.493701445164356 Functional Gain - NOL11 ENSG00000130935 CDS Human protein_coding chr17:65733721 chr17:65733720 stopgain 0.520 0 20 hm7G_associated_SNPs_21577 0 0 1 0 2 NOL11 chr17:65733808 5'GT 65733808 Upstream 89bp 20024 chr17 20319881 20319881 1 + G T LUAD 20319882 + 20319862 20319902 41 ATGTCATAAAGCCGGATCAGGTCCTGGGGCCGGGGGAAGCA ATGTCATAAAGCCGGATCATGTCCTGGGGCCGGGGGAAGCA < 41bp 0.452202540092855 0.74683691574296 NA NA prediction 0.493673831485919 Functional Gain - USP32P3 ENSG00000189423;ENSG00000237911 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:20319882 chr17:20319881 . . 0 20 hm7G_associated_SNPs_21578 0 0 0 0 1 USP32P3 chr17:20319805 3'AG 20319805 Downstream 77bp 20025 chr1 150956777 150956777 1 + G T UCEC 150956778 + 150956758 150956798 41 ACCTGATGAAGTCTCTACAGGCAGCACTTTCCGGCAACCTG ACCTGATGAAGTCTCTACATGCAGCACTTTCCGGCAACCTG < 41bp 0.638899025386779 0.885727754948691 NA NA prediction 0.493657459123824 Functional Gain - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150956778 chr1:150956777 nonsynonymous SNV 0.055 1 20 hm7G_associated_SNPs_21580 0 0 0 0 2 ANXA9 chr1:150956757 3'AG 150956757 Downstream 21bp 20026 chr1 150956777 150956777 1 + G T UCEC 150956778 + 150956758 150956798 41 ACCTGATGAAGTCTCTACAGGCAGCACTTTCCGGCAACCTG ACCTGATGAAGTCTCTACATGCAGCACTTTCCGGCAACCTG < 41bp 0.638899025386779 0.885727754948691 NA NA prediction 0.493657459123824 Functional Gain - ANXA9 ENSG00000143412 CDS Human protein_coding chr1:150956778 chr1:150956777 nonsynonymous SNV 0.055 1 20 hm7G_associated_SNPs_21580 0 0 0 0 2 ANXA9 chr1:150956870 5'GT 150956870 Upstream 94bp 20027 chr2 85982004 85982004 1 + G T BLCA 85982005 + 85981985 85982025 41 AAAGCCCTGCAGCAGACCCGGAGGCTCCTGGCGAACGCCAG AAAGCCCTGCAGCAGACCCTGAGGCTCCTGGCGAACGCCAG < 41bp 0.418311533155584 0.746825505181477 NA NA prediction 0.493651010362953 Functional Gain - ATOH8 ENSG00000168874 CDS Human protein_coding chr2:85982005 chr2:85982004 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21581 0 0 0 0 1 ATOH8 chr2:85982080 5'GT 85982080 Upstream 77bp 20028 chr12 6965522 6965522 1 + G T STAD 6965523 + 6965503 6965543 41 ACTCAGCCTCCCGCAAGCAGGAGGTGCAGGCATGGGATGGG ACTCAGCCTCCCGCAAGCATGAGGTGCAGGCATGGGATGGG < 41bp 0.64045302290213 0.887265278659279 NA NA prediction 0.493624511514297 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6965523 chr12:6965522 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21582 0 0 1 0 2 USP5 chr12:6965469 3'AG 6965469 Downstream 54bp 20029 chr12 6965522 6965522 1 + G T STAD 6965523 + 6965503 6965543 41 ACTCAGCCTCCCGCAAGCAGGAGGTGCAGGCATGGGATGGG ACTCAGCCTCCCGCAAGCATGAGGTGCAGGCATGGGATGGG < 41bp 0.64045302290213 0.887265278659279 NA NA prediction 0.493624511514297 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6965523 chr12:6965522 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21582 0 0 1 0 2 USP5 chr12:6965614 5'GT 6965614 Upstream 93bp 20030 chr2 226516171 226516171 1 + G T UCEC 226516172 + 226516152 226516192 41 TAAAGTAAGCTGCAAATTAGGCCGGTCTGCGTCGACGTCAG TAAAGTAAGCTGCAAATTATGCCGGTCTGCGTCGACGTCAG < 41bp 0.440558433963549 0.74680799605279 NA NA prediction 0.49361599210558 Functional Gain - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226516172 chr2:226516171 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_21583 0 0 0 0 2 NYAP2 chr2:226516148 3'AG 226516148 Downstream 24bp 20031 chr2 226516171 226516171 1 + G T UCEC 226516172 + 226516152 226516192 41 TAAAGTAAGCTGCAAATTAGGCCGGTCTGCGTCGACGTCAG TAAAGTAAGCTGCAAATTATGCCGGTCTGCGTCGACGTCAG < 41bp 0.440558433963549 0.74680799605279 NA NA prediction 0.49361599210558 Functional Gain - NYAP2 ENSG00000144460 CDS Human protein_coding chr2:226516172 chr2:226516171 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_21583 0 0 0 0 2 NYAP2 chr2:226516251 5'GT 226516251 Upstream 81bp 20032 chr8 22865620 22865620 1 + G T KIRC 22865621 + 22865601 22865641 41 TTTGTGGAGAGCTCCACCCGGGAGGTAAGGCTGAGGACACA TTTGTGGAGAGCTCCACCCTGGAGGTAAGGCTGAGGACACA < 41bp 0.636507079645442 0.883311590724542 NA NA prediction 0.493609022158201 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865621 chr8:22865620 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_21585 0 0 0 0 1 RHOBTB2 chr8:22865624 5'GT 22865624 Upstream 5bp 20033 chrX 13612981 13612981 1 + G T LIHC 13612982 + 13612962 13613002 41 CGAACCTGGATGTAAGTTTGGTGAGTGCGTGGGACCAAACA CGAACCTGGATGTAAGTTTTGTGAGTGCGTGGGACCAAACA < 41bp 0.625095208556162 0.87189241439847 NA NA prediction 0.493594411684618 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13612982 chrX:13612981 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_21587 0 0 0 0 2 EGFL6 chrX:13612955 3'AG 13612955 Downstream 27bp 20034 chrX 13612981 13612981 1 + G T LIHC 13612982 + 13612962 13613002 41 CGAACCTGGATGTAAGTTTGGTGAGTGCGTGGGACCAAACA CGAACCTGGATGTAAGTTTTGTGAGTGCGTGGGACCAAACA < 41bp 0.625095208556162 0.87189241439847 NA NA prediction 0.493594411684618 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13612982 chrX:13612981 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_21587 0 0 0 0 2 EGFL6 chrX:13613047 5'GT 13613047 Upstream 67bp 20035 chr8 143562922 143562922 1 + G T COAD 143562923 + 143562903 143562943 41 AGCGAGGGCTGCCTGGGGAGGGGGTCTCGGAGGTCATCCAG AGCGAGGGCTGCCTGGGGATGGGGTCTCGGAGGTCATCCAG < 41bp 0.401046955567062 0.746781808287567 NA NA prediction 0.493563616575135 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143562923 chr8:143562922 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_21589 0 0 0 0 1 ADGRB1 chr8:143562878 3'AG 143562878 Downstream 45bp 20036 chr20 36151076 36151076 1 + G T UCEC 36151077 + 36151057 36151097 41 TTCTCGTCGCAGGTGTTCAGGTACTCCCTGCAGAAGCTGGC TTCTCGTCGCAGGTGTTCATGTACTCCCTGCAGAAGCTGGC < 41bp 0.618147408473765 0.864913316065277 NA NA prediction 0.493531815183023 Functional Gain - NNAT ENSG00000053438 CDS Human protein_coding chr20:36151077 chr20:36151076 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21590 0 0 0 0 1 NNAT chr20:36151069 3'AG 36151069 Downstream 8bp 20037 chr12 70794062 70794062 1 + G T SKCM 70794063 + 70794043 70794083 41 ATGAATTGGCAACAGTACTGGAAAGATGAGATTGGTTCCCA ATGAATTGGCAACAGTACTTGAAAGATGAGATTGGTTCCCA < 41bp 0.618116684703336 0.864862627668369 NA NA prediction 0.493491885930066 Functional Gain - KCNMB4 ENSG00000135643 CDS Human protein_coding chr12:70794063 chr12:70794062 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21591 0 0 0 0 2 KCNMB4 chr12:70793989 3'AG 70793989 Downstream 74bp 20038 chr12 70794062 70794062 1 + G T SKCM 70794063 + 70794043 70794083 41 ATGAATTGGCAACAGTACTGGAAAGATGAGATTGGTTCCCA ATGAATTGGCAACAGTACTTGAAAGATGAGATTGGTTCCCA < 41bp 0.618116684703336 0.864862627668369 NA NA prediction 0.493491885930066 Functional Gain - KCNMB4 ENSG00000135643 CDS Human protein_coding chr12:70794063 chr12:70794062 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21591 0 0 0 0 2 KCNMB4 chr12:70794116 5'GT 70794116 Upstream 55bp 20039 chr19 42085895 42085895 1 + G T LUAD 42085896 + 42085876 42085916 41 CTCACCATAGACCCCATCAGGCAGGAGGACGCTGGGGAGTA CTCACCATAGACCCCATCATGCAGGAGGACGCTGGGGAGTA < 41bp 0.629722813982211 0.876462724788297 NA NA prediction 0.493479821612172 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42085896 chr19:42085895 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_21592 0 0 0 0 1 CEACAM21 chr19:42085981 5'GT 42085981 Upstream 87bp 20040 chr7 30795047 30795047 1 + G T LUAD 30795048 + 30795028 30795068 41 CTCTCTGCAGCGGCCGATGGGAGGAGAAGGAGGAGAAGCTG CTCTCTGCAGCGGCCGATGTGAGGAGAAGGAGGAGAAGCTG < 41bp 0.616384545809589 0.863101636322051 NA NA prediction 0.493434181024924 Functional Gain - INMT ENSG00000241644 CDS Human protein_coding chr7:30795048 chr7:30795047 nonsynonymous SNV 0.578 3 20 hm7G_associated_SNPs_21594 0 0 0 0 1 INMT chr7:30795038 3'AG 30795038 Downstream 10bp 20041 chr1 18554486 18554486 1 + G T LUAD 18554487 + 18554467 18554507 41 AGACAGATGGGCGCATGCGGGAGATCGTGTGGTACCGGGTA AGACAGATGGGCGCATGCGTGAGATCGTGTGGTACCGGGTA < 41bp 0.414071822863351 0.746715380323248 NA NA prediction 0.493430760646496 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18554487 chr1:18554486 synonymous SNV . 0 20 hm7G_associated_SNPs_21595 0 0 0 0 2 IGSF21 chr1:18554392 3'AG 18554392 Downstream 95bp 20042 chr1 18554486 18554486 1 + G T LUAD 18554487 + 18554467 18554507 41 AGACAGATGGGCGCATGCGGGAGATCGTGTGGTACCGGGTA AGACAGATGGGCGCATGCGTGAGATCGTGTGGTACCGGGTA < 41bp 0.414071822863351 0.746715380323248 NA NA prediction 0.493430760646496 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18554487 chr1:18554486 synonymous SNV . 0 20 hm7G_associated_SNPs_21595 0 0 0 0 2 IGSF21 chr1:18554504 5'GT 18554504 Upstream 19bp 20043 chr12 69085873 69085873 1 + G T STAD 69085874 + 69085854 69085894 41 GTGCTGTTATGTTACGTGAGGATGATCCTGGAGAAGCTGGT GTGCTGTTATGTTACGTGATGATGATCCTGGAGAAGCTGGT < 41bp 0.619929566849408 0.866614582449448 NA NA prediction 0.493370031200081 Functional Gain - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69085874 chr12:69085873 nonsynonymous SNV 0.900 3 20 hm7G_associated_SNPs_21598 0 0 1 0 1 NUP107 chr12:69085892 5'GT 69085892 Upstream 20bp 20044 chr19 44469153 44469153 1 + G T LUSC 44469154 + 44469134 44469174 41 CTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGA CTTCACTGAGGAGGAGCTGTGGCTGCTGGACCCTGCCCAGA < 41bp 0.631227877877571 0.87790752190415 NA NA prediction 0.493359288053158 Functional Gain - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469154 chr19:44469153 nonsynonymous SNV 0.964 3 20 hm7G_associated_SNPs_21600 0 0 0 0 2 ZNF221 chr19:44469102 3'AG 44469102 Downstream 52bp 20045 chr19 44469153 44469153 1 + G T LUSC 44469154 + 44469134 44469174 41 CTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGA CTTCACTGAGGAGGAGCTGTGGCTGCTGGACCCTGCCCAGA < 41bp 0.631227877877571 0.87790752190415 NA NA prediction 0.493359288053158 Functional Gain - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469154 chr19:44469153 nonsynonymous SNV 0.964 3 20 hm7G_associated_SNPs_21600 0 0 0 0 2 ZNF221 chr19:44469228 5'GT 44469228 Upstream 76bp 20046 chr9 139972990 139972990 1 + G T UCEC 139972991 + 139972971 139973011 41 AGTTCACTCTGGGGCCCACGGCCGAGTTCTTCAGGGAGCAC AGTTCACTCTGGGGCCCACTGCCGAGTTCTTCAGGGAGCAC < 41bp 0.394197638789464 0.746675628295179 NA NA prediction 0.493351256590358 Functional Gain - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139972991 chr9:139972990 synonymous SNV . 0 20 hm7G_associated_SNPs_21601 0 0 1 0 1 UAP1L1 chr9:139972954 3'AG 139972954 Downstream 37bp 20047 chrX 57367751 57367751 1 + G T UCEC 57367752 + 57367732 57367772 41 CTGCTCAGTTATTGGTGTGGGCTCTGATATTGGTGGTAGCA CTGCTCAGTTATTGGTGTGTGCTCTGATATTGGTGGTAGCA < 41bp 0.626276972974428 0.872944148866255 NA NA prediction 0.493334351783654 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57367752 chrX:57367751 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_21603 0 0 0 0 2 FAAH2 chrX:57367704 3'AG 57367704 Downstream 48bp 20048 chrX 57367751 57367751 1 + G T UCEC 57367752 + 57367732 57367772 41 CTGCTCAGTTATTGGTGTGGGCTCTGATATTGGTGGTAGCA CTGCTCAGTTATTGGTGTGTGCTCTGATATTGGTGGTAGCA < 41bp 0.626276972974428 0.872944148866255 NA NA prediction 0.493334351783654 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57367752 chrX:57367751 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_21603 0 0 0 0 2 FAAH2 chrX:57367823 5'GT 57367823 Upstream 73bp 20049 chr15 81565534 81565534 1 + G T UCS 81565535 + 81565515 81565555 41 GCAGCAGCAGCCGATGGAAGGCTACAGGAAGGTAGGCTTCC GCAGCAGCAGCCGATGGAATGCTACAGGAAGGTAGGCTTCC < 41bp 0.618080962556018 0.864747632637662 NA NA prediction 0.493333340163289 Functional Gain - IL16 ENSG00000172349 CDS Human protein_coding chr15:81565535 chr15:81565534 nonsynonymous SNV 0.664 4 20 hm7G_associated_SNPs_21604 0 0 0 0 1 IL16 chr15:81565545 5'GT 81565545 Upstream 12bp 20050 chr14 76965204 76965204 1 + G T COAD 76965205 + 76965185 76965225 41 CCCATCTGTGGCCTGGGTGGGCACTGCTCAGGCTGGATACC CCCATCTGTGGCCTGGGTGTGCACTGCTCAGGCTGGATACC < 41bp 0.406849868949506 0.746664665526618 NA NA prediction 0.493329331053236 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76965205 chr14:76965204 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_21605 0 0 1 0 1 ESRRB chr14:76965255 5'GT 76965255 Upstream 52bp 20051 chr5 161569272 161569272 1 + G T LUSC 161569273 + 161569253 161569293 41 CTCATTGTCGTCCTATCCTGGGTGTCTTTCTGGATCAATAA CTCATTGTCGTCCTATCCTTGGTGTCTTTCTGGATCAATAA < 41bp 0.408675034251986 0.746658567139337 NA NA prediction 0.493317134278674 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161569273 chr5:161569272 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21606 0 0 0 0 1 GABRG2 chr5:161569322 5'GT 161569322 Upstream 51bp 20052 chr4 8221067 8221067 1 + G T rs200686267 8221068 + 8221048 8221088 41 GCTTTCTTCCGCAGCTGTGGGCCTGGCCTCGGCATTGGCAG GCTTTCTTCCGCAGCTGTGTGCCTGGCCTCGGCATTGGCAG < 41bp 0.39544631245038 0.746655777928551 NA NA prediction 0.493311555857102 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8221068 chr4:8221067 nonsynonymous SNV 0.636 4 20 hm7G_associated_SNPs_21607 0 0 1 0 1 SH3TC1 chr4:8221062 3'AG 8221062 Downstream 6bp 20053 chr17 1675236 1675236 1 + G T SARC 1675237 + 1675217 1675257 41 CCAGGCCCAGAGTCCTGACGGGCAACCCTCGCTTGGACCTG CCAGGCCCAGAGTCCTGACTGGCAACCCTCGCTTGGACCTG < 41bp 0.643968451237876 0.890563840304297 NA NA prediction 0.493190778132842 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1675237 chr17:1675236 synonymous SNV . 0 20 hm7G_associated_SNPs_21611 0 0 1 0 1 SERPINF1 chr17:1675166 3'AG 1675166 Downstream 71bp 20054 chr1 158047910 158047910 1 + G T MESO 158047911 + 158047891 158047931 41 GCCGCCCTGCGCTCTCGGCGGGCCAAACTCACCGTGCTCAG GCCGCCCTGCGCTCTCGGCTGGCCAAACTCACCGTGCTCAG < 41bp 0.396938566671008 0.746590111713029 NA NA prediction 0.493180223426059 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158047911 chr1:158047910 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_21613 0 0 0 0 1 KIRREL chr1:158047930 5'GT 158047930 Upstream 21bp 20055 chr17 76071260 76071260 1 + G T UCEC 76071261 + 76071241 76071281 41 ACGTGGACAAGCGTGGGCTGGGAGTGACCGACCATAATGGA ACGTGGACAAGCGTGGGCTTGGAGTGACCGACCATAATGGA < 41bp 0.394559377891717 0.746589683106865 NA NA prediction 0.493179366213731 Functional Gain - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76071261 chr17:76071260 synonymous SNV . 0 20 hm7G_associated_SNPs_21614 0 0 1 0 2 TNRC6C chr17:76071217 3'AG 76071217 Downstream 44bp 20056 chr17 76071260 76071260 1 + G T UCEC 76071261 + 76071241 76071281 41 ACGTGGACAAGCGTGGGCTGGGAGTGACCGACCATAATGGA ACGTGGACAAGCGTGGGCTTGGAGTGACCGACCATAATGGA < 41bp 0.394559377891717 0.746589683106865 NA NA prediction 0.493179366213731 Functional Gain - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76071261 chr17:76071260 synonymous SNV . 0 20 hm7G_associated_SNPs_21614 0 0 1 0 2 TNRC6C chr17:76071359 5'GT 76071359 Upstream 100bp 20057 chr4 3131704 3131704 1 + G T LIHC 3131705 + 3131685 3131725 41 TGCAGATTGGACAGCCCCAGGATGAAGATGAGGAAGCCACA TGCAGATTGGACAGCCCCATGATGAAGATGAGGAAGCCACA < 41bp 0.417385451296807 0.746556915856369 NA NA prediction 0.493113831712738 Functional Gain - HTT ENSG00000197386 CDS Human protein_coding chr4:3131705 chr4:3131704 nonsynonymous SNV 0.581 2 20 hm7G_associated_SNPs_21615 0 0 1 0 2 HTT chr4:3131651 3'AG 3131651 Downstream 54bp 20058 chr4 3131704 3131704 1 + G T LIHC 3131705 + 3131685 3131725 41 TGCAGATTGGACAGCCCCAGGATGAAGATGAGGAAGCCACA TGCAGATTGGACAGCCCCATGATGAAGATGAGGAAGCCACA < 41bp 0.417385451296807 0.746556915856369 NA NA prediction 0.493113831712738 Functional Gain - HTT ENSG00000197386 CDS Human protein_coding chr4:3131705 chr4:3131704 nonsynonymous SNV 0.581 2 20 hm7G_associated_SNPs_21615 0 0 1 0 2 HTT chr4:3131774 5'GT 3131774 Upstream 71bp 20059 chr12 109948159 109948159 1 + G T BLCA 109948160 + 109948140 109948180 41 GTCCCACAGAGAACGCCAAGGGTGAGACCTTGGAGCTGTTC GTCCCACAGAGAACGCCAATGGTGAGACCTTGGAGCTGTTC < 41bp 0.40972992345659 0.746554846885826 NA NA prediction 0.493109693771653 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109948160 chr12:109948159 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21616 0 0 1 0 1 UBE3B chr12:109948149 3'AG 109948149 Downstream 11bp 20060 chr6 64401837 64401837 1 + G T COAD 64401838 + 64401818 64401858 41 ATAGTGGAGATAAAACAATGGAGTGTGAAAAGCTTGGATTA ATAGTGGAGATAAAACAATTGAGTGTGAAAAGCTTGGATTA < 41bp 0.4306415193281 0.746554585957181 NA NA prediction 0.493109171914362 Functional Gain - PHF3 ENSG00000118482 CDS Human protein_coding chr6:64401838 chr6:64401837 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21617 0 0 1 0 1 PHF3 chr6:64401933 5'GT 64401933 Upstream 97bp 20061 chr2 219498480 219498480 1 + G T COAD 219498481 + 219498461 219498501 41 CCAAGCGCCTCATCAAGGAGGCTGGTCAGGACCAAAATGGA CCAAGCGCCTCATCAAGGATGCTGGTCAGGACCAAAATGGA < 41bp 0.632290792865891 0.878844972589752 NA NA prediction 0.493108359447723 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219498481 chr2:219498480 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_21618 0 0 0 0 1 PLCD4 chr2:219498484 5'GT 219498484 Upstream 5bp 20062 chr15 91421523 91421523 1 + G T LUAD 91421524 + 91421504 91421544 41 CGAGGAGGCCTTCTTCCGTGGGGTTAGCCAGGTGAGGTGGG CGAGGAGGCCTTCTTCCGTTGGGTTAGCCAGGTGAGGTGGG < 41bp 0.397379514680248 0.746532473468283 NA NA prediction 0.493064946936566 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91421524 chr15:91421523 nonsynonymous SNV 0.974 5 20 hm7G_associated_SNPs_21619 0 0 0 0 1 FURIN chr15:91421534 5'GT 91421534 Upstream 12bp 20063 chr6 28497230 28497230 1 + G T LUAD 28497231 + 28497211 28497251 41 TAAAAAAAATCTTCCAGATGGATTGCCACAAAGACGAGAAA TAAAAAAAATCTTCCAGATTGATTGCCACAAAGACGAGAAA < 41bp 0.431939564704027 0.746530060268322 NA NA prediction 0.493060120536644 Functional Gain - GPX5 ENSG00000224586 CDS Human protein_coding chr6:28497231 chr6:28497230 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_21620 0 0 0 0 1 GPX5 chr6:28497228 3'AG 28497228 Downstream 3bp 20064 chr17 37815776 37815776 1 + G T LUAD 37815777 + 37815757 37815797 41 TGGACCAGATCTTGGCCCAGGAAGAGAACTGGAAGTTTGAG TGGACCAGATCTTGGCCCATGAAGAGAACTGGAAGTTTGAG < 41bp 0.638228378469887 0.884723549519741 NA NA prediction 0.492990342099707 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815777 chr17:37815776 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21624 0 0 1 1 2 STARD3 chr17:37815714 3'AG 37815714 Downstream 63bp 20065 chr17 37815776 37815776 1 + G T LUAD 37815777 + 37815757 37815797 41 TGGACCAGATCTTGGCCCAGGAAGAGAACTGGAAGTTTGAG TGGACCAGATCTTGGCCCATGAAGAGAACTGGAAGTTTGAG < 41bp 0.638228378469887 0.884723549519741 NA NA prediction 0.492990342099707 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37815777 chr17:37815776 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21624 0 0 1 1 2 STARD3 chr17:37815806 5'GT 37815806 Upstream 31bp 20066 chr16 31391671 31391671 1 + G T LUAD 31391672 + 31391652 31391692 41 GCTGGATTTCACCCTGAAGGGCAACCTCAGCTTTGGCTGGG GCTGGATTTCACCCTGAAGTGCAACCTCAGCTTTGGCTGGG < 41bp 0.396136255332793 0.746486127452296 NA NA prediction 0.492972254904592 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391672 chr16:31391671 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21627 0 0 0 0 2 ITGAX chr16:31391587 3'AG 31391587 Downstream 85bp 20067 chr16 31391671 31391671 1 + G T LUAD 31391672 + 31391652 31391692 41 GCTGGATTTCACCCTGAAGGGCAACCTCAGCTTTGGCTGGG GCTGGATTTCACCCTGAAGTGCAACCTCAGCTTTGGCTGGG < 41bp 0.396136255332793 0.746486127452296 NA NA prediction 0.492972254904592 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31391672 chr16:31391671 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21627 0 0 0 0 2 ITGAX chr16:31391700 5'GT 31391700 Upstream 30bp 20068 chr1 26360267 26360267 1 + G T UCEC 26360268 + 26360248 26360288 41 CGAGCCATTTCTGGGACGAGGCCCATGGTGGCTGGGGCTAC CGAGCCATTTCTGGGACGATGCCCATGGTGGCTGGGGCTAC < 41bp 0.637150732073486 0.883627053276412 NA NA prediction 0.492952642405852 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26360268 chr1:26360267 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_21630 0 0 0 0 2 EXTL1 chr1:26360187 3'AG 26360187 Downstream 81bp 20069 chr1 26360267 26360267 1 + G T UCEC 26360268 + 26360248 26360288 41 CGAGCCATTTCTGGGACGAGGCCCATGGTGGCTGGGGCTAC CGAGCCATTTCTGGGACGATGCCCATGGTGGCTGGGGCTAC < 41bp 0.637150732073486 0.883627053276412 NA NA prediction 0.492952642405852 Functional Gain - EXTL1 ENSG00000158008 CDS Human protein_coding chr1:26360268 chr1:26360267 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_21630 0 0 0 0 2 EXTL1 chr1:26360347 5'GT 26360347 Upstream 81bp 20070 chr18 23731889 23731889 1 + G T BRCA 23731890 + 23731870 23731910 41 GCCAGAGCCATAAGCTTACGGTTGAGGACCCAGTCACTGTA GCCAGAGCCATAAGCTTACTGTTGAGGACCCAGTCACTGTA < 41bp 0.614686663752578 0.861145830607816 NA NA prediction 0.492918333710477 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23731890 chr18:23731889 synonymous SNV . 0 20 hm7G_associated_SNPs_21631 0 0 0 0 3 PSMA8 chr18:23731804 3'AG 23731804 Downstream 86bp 20071 chr18 23731889 23731889 1 + G T BRCA 23731890 + 23731870 23731910 41 GCCAGAGCCATAAGCTTACGGTTGAGGACCCAGTCACTGTA GCCAGAGCCATAAGCTTACTGTTGAGGACCCAGTCACTGTA < 41bp 0.614686663752578 0.861145830607816 NA NA prediction 0.492918333710477 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23731890 chr18:23731889 synonymous SNV . 0 20 hm7G_associated_SNPs_21631 0 0 0 0 3 PSMA8 chr18:23731822 3'AG 23731822 Downstream 68bp 20072 chr18 23731889 23731889 1 + G T BRCA 23731890 + 23731870 23731910 41 GCCAGAGCCATAAGCTTACGGTTGAGGACCCAGTCACTGTA GCCAGAGCCATAAGCTTACTGTTGAGGACCCAGTCACTGTA < 41bp 0.614686663752578 0.861145830607816 NA NA prediction 0.492918333710477 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23731890 chr18:23731889 synonymous SNV . 0 20 hm7G_associated_SNPs_21631 0 0 0 0 3 PSMA8 chr18:23731946 5'GT 23731946 Upstream 58bp 20073 chr5 23518018 23518018 1 + G T LUAD 23518019 + 23517999 23518039 41 CTTGGATGGCCTTAAGAGTGGAACAGCGTAAACACCAGAAG CTTGGATGGCCTTAAGAGTTGAACAGCGTAAACACCAGAAG < 41bp 0.437699657649005 0.74645740799652 NA NA prediction 0.492914815993039 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23518019 chr5:23518018 synonymous SNV . 0 20 hm7G_associated_SNPs_21632 0 0 0 0 2 PRDM9 chr5:23517990 3'AG 23517990 Downstream 29bp 20074 chr5 23518018 23518018 1 + G T LUAD 23518019 + 23517999 23518039 41 CTTGGATGGCCTTAAGAGTGGAACAGCGTAAACACCAGAAG CTTGGATGGCCTTAAGAGTTGAACAGCGTAAACACCAGAAG < 41bp 0.437699657649005 0.74645740799652 NA NA prediction 0.492914815993039 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23518019 chr5:23518018 synonymous SNV . 0 20 hm7G_associated_SNPs_21632 0 0 0 0 2 PRDM9 chr5:23518039 5'GT 23518039 Upstream 22bp 20075 chr11 75501281 75501281 1 + G T SKCM 75501282 + 75501262 75501302 41 ATATTCTGCACTGATTGCTGGCTCATCGCTGTGCTCTACTT ATATTCTGCACTGATTGCTTGCTCATCGCTGTGCTCTACTT < 41bp 0.640339821515982 0.886793571477112 NA NA prediction 0.49290749992226 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75501282 chr11:75501281 nonsynonymous SNV 0.900 4 20 hm7G_associated_SNPs_21633 0 0 1 0 2 DGAT2 chr11:75501233 3'AG 75501233 Downstream 49bp 20076 chr11 75501281 75501281 1 + G T SKCM 75501282 + 75501262 75501302 41 ATATTCTGCACTGATTGCTGGCTCATCGCTGTGCTCTACTT ATATTCTGCACTGATTGCTTGCTCATCGCTGTGCTCTACTT < 41bp 0.640339821515982 0.886793571477112 NA NA prediction 0.49290749992226 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75501282 chr11:75501281 nonsynonymous SNV 0.900 4 20 hm7G_associated_SNPs_21633 0 0 1 0 2 DGAT2 chr11:75501340 5'GT 75501340 Upstream 60bp 20077 chr8 37672477 37672477 1 + G T LUSC 37672478 + 37672458 37672498 41 TCCTGGGACTGTCACTGCTGGAGAAGCTGTAAGTGCTGGGG TCCTGGGACTGTCACTGCTTGAGAAGCTGTAAGTGCTGGGG < 41bp 0.401437921340375 0.74642218780344 NA NA prediction 0.49284437560688 Functional Gain - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37672478 chr8:37672477 synonymous SNV . 0 20 hm7G_associated_SNPs_21635 0 0 0 0 2 ADGRA2 chr8:37672414 3'AG 37672414 Downstream 64bp 20078 chr8 37672477 37672477 1 + G T LUSC 37672478 + 37672458 37672498 41 TCCTGGGACTGTCACTGCTGGAGAAGCTGTAAGTGCTGGGG TCCTGGGACTGTCACTGCTTGAGAAGCTGTAAGTGCTGGGG < 41bp 0.401437921340375 0.74642218780344 NA NA prediction 0.49284437560688 Functional Gain - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37672478 chr8:37672477 synonymous SNV . 0 20 hm7G_associated_SNPs_21635 0 0 0 0 2 ADGRA2 chr8:37672485 5'GT 37672485 Upstream 9bp 20079 chr1 22924651 22924651 1 + G T LUAD 22924652 + 22924632 22924672 41 CTGCCCGCCCAGGCCGCCTGGCAATGATTGTGACTGAGTAC CTGCCCGCCCAGGCCGCCTTGCAATGATTGTGACTGAGTAC < 41bp 0.394734879339195 0.746414093581444 NA NA prediction 0.492828187162887 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924652 chr1:22924651 synonymous SNV . 0 20 hm7G_associated_SNPs_21636 0 0 0 0 1 EPHA8 chr1:22924644 3'AG 22924644 Downstream 8bp 20080 chr3 170016830 170016830 1 + G T LUAD 170016831 + 170016811 170016851 41 TTAAACCAAATATTTCTGGGGAATTTGGTTTGGACAACTTT TTAAACCAAATATTTCTGGTGAATTTGGTTTGGACAACTTT < 41bp 0.596644476427759 0.843055378095576 NA NA prediction 0.492821803335633 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170016831 chr3:170016830 synonymous SNV . 0 20 hm7G_associated_SNPs_21637 0 0 0 0 2 PRKCI chr3:170016783 3'AG 170016783 Downstream 48bp 20081 chr3 170016830 170016830 1 + G T LUAD 170016831 + 170016811 170016851 41 TTAAACCAAATATTTCTGGGGAATTTGGTTTGGACAACTTT TTAAACCAAATATTTCTGGTGAATTTGGTTTGGACAACTTT < 41bp 0.596644476427759 0.843055378095576 NA NA prediction 0.492821803335633 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170016831 chr3:170016830 synonymous SNV . 0 20 hm7G_associated_SNPs_21637 0 0 0 0 2 PRKCI chr3:170016898 5'GT 170016898 Upstream 69bp 20082 chr11 132184465 132184465 1 + G T LUAD 132184466 + 132184446 132184486 41 ACTGATTGAAGGAAAGAAAGGGGTGAAAGTGGAAAACAGAC ACTGATTGAAGGAAAGAAATGGGTGAAAGTGGAAAACAGAC < 41bp 0.527071074696088 0.773478173168678 NA NA prediction 0.49281419694518 Functional Gain - NTM ENSG00000182667 CDS Human protein_coding chr11:132184466 chr11:132184465 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_21638 0 0 0 0 1 NTM chr11:132184446 3'AG 132184446 Downstream 20bp 20083 chr6 43488123 43488123 1 + G T UCEC 43488124 + 43488104 43488144 41 CATCGCTCAGCTGCGGCCTGGCCAAGAAATTGACCTGCTCA CATCGCTCAGCTGCGGCCTTGCCAAGAAATTGACCTGCTCA < 41bp 0.637152273504163 0.883540080659821 NA NA prediction 0.492775614311316 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43488124 chr6:43488123 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21639 0 0 1 0 1 POLR1C chr6:43488165 5'GT 43488165 Upstream 43bp 20084 chr2 128387322 128387322 1 + G T LUAD 128387323 + 128387303 128387343 41 ACCCTCGGCCAGAACGACAGGACAGGCAAGACGGGGCTGGT ACCCTCGGCCAGAACGACATGACAGGCAAGACGGGGCTGGT < 41bp 0.636259308340979 0.882643920305679 NA NA prediction 0.4927692239294 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128387323 chr2:128387322 nonsynonymous SNV 0.359 4 20 hm7G_associated_SNPs_21640 0 0 0 0 1 MYO7B chr2:128387401 5'GT 128387401 Upstream 80bp 20085 chr16 67575419 67575419 1 + G T BRCA 67575420 + 67575400 67575440 41 TGTTTGCCGCCCTGCCCCAGGTTGTGGCTGTGGATATCAAT TGTTTGCCGCCCTGCCCCATGTTGTGGCTGTGGATATCAAT < 41bp 0.400958972413063 0.746382667863881 NA NA prediction 0.492765335727762 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575420 chr16:67575419 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21641 0 0 1 0 2 RIPOR1 chr16:67575333 3'AG 67575333 Downstream 87bp 20086 chr16 67575419 67575419 1 + G T BRCA 67575420 + 67575400 67575440 41 TGTTTGCCGCCCTGCCCCAGGTTGTGGCTGTGGATATCAAT TGTTTGCCGCCCTGCCCCATGTTGTGGCTGTGGATATCAAT < 41bp 0.400958972413063 0.746382667863881 NA NA prediction 0.492765335727762 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575420 chr16:67575419 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21641 0 0 1 0 2 RIPOR1 chr16:67575481 5'GT 67575481 Upstream 63bp 20087 chr13 26959403 26959403 1 + G T HNSC 26959404 + 26959384 26959424 41 TGAAGCCTTTAGCAGATTTGGATCCAGTGGTTGTTACATTC TGAAGCCTTTAGCAGATTTTGATCCAGTGGTTGTTACATTC < 41bp 0.410928741822601 0.746364496139839 NA NA prediction 0.492728992279678 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26959404 chr13:26959403 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21642 0 0 1 0 2 CDK8 chr13:26959348 3'AG 26959348 Downstream 56bp 20088 chr13 26959403 26959403 1 + G T HNSC 26959404 + 26959384 26959424 41 TGAAGCCTTTAGCAGATTTGGATCCAGTGGTTGTTACATTC TGAAGCCTTTAGCAGATTTTGATCCAGTGGTTGTTACATTC < 41bp 0.410928741822601 0.746364496139839 NA NA prediction 0.492728992279678 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26959404 chr13:26959403 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21642 0 0 1 0 2 CDK8 chr13:26959479 5'GT 26959479 Upstream 77bp 20089 chr6 153042941 153042941 1 + G T LUSC 153042942 + 153042922 153042962 41 TACTTGGAGGATTTATTTGGGCTGTGTTCATTTGTCTGTCT TACTTGGAGGATTTATTTGTGCTGTGTTCATTTGTCTGTCT < 41bp 0.606656605959407 0.852991839257266 NA NA prediction 0.492670466595717 Functional Gain - MYCT1 ENSG00000120279 CDS Human protein_coding chr6:153042942 chr6:153042941 nonsynonymous SNV 0.915 4 20 hm7G_associated_SNPs_21647 0 0 0 0 1 MYCT1 chr6:153042877 3'AG 153042877 Downstream 65bp 20090 chr17 7534568 7534568 1 + G T rs186960957 7534569 + 7534549 7534589 41 TGCTGGAGGTGGATGGGGAGGAGGTGCTGCGCCTGAGACAG TGCTGGAGGTGGATGGGGATGAGGTGCTGCGCCTGAGACAG < 41bp 0.445477343807644 0.746324309906549 NA NA prediction 0.492648619813097 Functional Gain - SHBG ENSG00000129214 CDS Human protein_coding chr17:7534569 chr17:7534568 nonsynonymous SNV 0.879 0 20 hm7G_associated_SNPs_21650 0 0 0 0 1 SHBG chr17:7534518 3'AG 7534518 Downstream 51bp 20091 chr19 54503016 54503016 1 + G T LUSC 54503017 + 54502997 54503037 41 AGTTGGAGCCGTCTGCTTTGGCCTCTCAGGTGAGGGTTCAG AGTTGGAGCCGTCTGCTTTTGCCTCTCAGGTGAGGGTTCAG < 41bp 0.638747110244393 0.885058905634064 NA NA prediction 0.492623590779341 Functional Gain - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54503017 chr19:54503016 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21651 0 0 0 0 1 CACNG6 chr19:54503025 5'GT 54503025 Upstream 10bp 20092 chr1 100357165 100357165 1 + G T THCA 100357166 + 100357146 100357186 41 TTTATTTTAATTACAGGTTGGTAAATGGTTGCAGGCTATGT TTTATTTTAATTACAGGTTTGTAAATGGTTGCAGGCTATGT < 41bp 0.597078017717833 0.843381729456098 NA NA prediction 0.492607423476531 Functional Gain - AGL ENSG00000162688 CDS Human protein_coding chr1:100357166 chr1:100357165 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_21652 0 0 0 0 1 AGL chr1:100357162 3'AG 100357162 Downstream 4bp 20093 chr5 23522810 23522810 1 + G T KIRC 23522811 + 23522791 23522831 41 GACAGTGCAGTGGACAAGGGGCACCCCAACCGTTCAGCCCT GACAGTGCAGTGGACAAGGTGCACCCCAACCGTTCAGCCCT < 41bp 0.402902228373335 0.746274858231692 NA NA prediction 0.492549716463384 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522811 chr5:23522810 nonsynonymous SNV 0.125 2 20 hm7G_associated_SNPs_21653 0 0 0 0 1 PRDM9 chr5:23522723 3'AG 23522723 Downstream 88bp 20094 chr1 110581882 110581882 1 + G T LUAD 110581883 + 110581863 110581903 41 GCTTGGAAGTCACTGCCAGGGAGAAGAGACTCAAGGTGGCT GCTTGGAAGTCACTGCCAGTGAGAAGAGACTCAAGGTGGCT < 41bp 0.574934938006992 0.821206315549272 NA NA prediction 0.49254275508456 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110581883 chr1:110581882 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_21654 0 0 1 0 2 STRIP1 chr1:110581794 3'AG 110581794 Downstream 89bp 20095 chr1 110581882 110581882 1 + G T LUAD 110581883 + 110581863 110581903 41 GCTTGGAAGTCACTGCCAGGGAGAAGAGACTCAAGGTGGCT GCTTGGAAGTCACTGCCAGTGAGAAGAGACTCAAGGTGGCT < 41bp 0.574934938006992 0.821206315549272 NA NA prediction 0.49254275508456 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110581883 chr1:110581882 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_21654 0 0 1 0 2 STRIP1 chr1:110581928 5'GT 110581928 Upstream 47bp 20096 chr18 14848848 14848848 1 + G T UCEC 14848849 + 14848829 14848869 41 AGTTTTGTGTACTACAAAAGGAACTGTCAGAAGCGAAAGAA AGTTTTGTGTACTACAAAATGAACTGTCAGAAGCGAAAGAA < 41bp 0.43950284400356 0.746262507075052 NA NA prediction 0.492525014150105 Functional Gain - ANKRD30B ENSG00000180777 CDS Human protein_coding chr18:14848849 chr18:14848848 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_21655 0 0 0 0 1 ANKRD30B chr18:14848928 5'GT 14848928 Upstream 81bp 20097 chr2 219618342 219618342 1 + G T CESC 219618343 + 219618323 219618363 41 CACTTCTGACTATCTCAAAGGATGACGTGATACTCAATGCC CACTTCTGACTATCTCAAATGATGACGTGATACTCAATGCC < 41bp 0.405313847979543 0.746252016751925 NA NA prediction 0.49250403350385 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219618343 chr2:219618342 nonsynonymous SNV 0.325 3 20 hm7G_associated_SNPs_21656 0 0 1 0 2 TTLL4 chr2:219618307 3'AG 219618307 Downstream 36bp 20098 chr2 219618342 219618342 1 + G T CESC 219618343 + 219618323 219618363 41 CACTTCTGACTATCTCAAAGGATGACGTGATACTCAATGCC CACTTCTGACTATCTCAAATGATGACGTGATACTCAATGCC < 41bp 0.405313847979543 0.746252016751925 NA NA prediction 0.49250403350385 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219618343 chr2:219618342 nonsynonymous SNV 0.325 3 20 hm7G_associated_SNPs_21656 0 0 1 0 2 TTLL4 chr2:219618392 5'GT 219618392 Upstream 51bp 20099 chr1 46871725 46871725 1 + G T LGG 46871726 + 46871706 46871746 41 CCAGCAAGAGTGGCCTGAAGGGCTGTGTCTATGGACAGGAG CCAGCAAGAGTGGCCTGAATGGCTGTGTCTATGGACAGGAG < 41bp 0.633170206672094 0.879419271440459 NA NA prediction 0.492498129536731 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871726 chr1:46871725 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21657 0 0 1 0 2 FAAH chr1:46871710 3'AG 46871710 Downstream 16bp 20100 chr1 46871725 46871725 1 + G T LGG 46871726 + 46871706 46871746 41 CCAGCAAGAGTGGCCTGAAGGGCTGTGTCTATGGACAGGAG CCAGCAAGAGTGGCCTGAATGGCTGTGTCTATGGACAGGAG < 41bp 0.633170206672094 0.879419271440459 NA NA prediction 0.492498129536731 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871726 chr1:46871725 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21657 0 0 1 0 2 FAAH chr1:46871750 5'GT 46871750 Upstream 26bp 20101 chr10 13169870 13169870 1 + G T UCEC 13169871 + 13169851 13169891 41 CCATTGCCAAGCAGGAAGAGGACCTGGAAACCATGACCATC CCATTGCCAAGCAGGAAGATGACCTGGAAACCATGACCATC < 41bp 0.619381960758989 0.865627514717325 NA NA prediction 0.492491107916671 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13169871 chr10:13169870 nonsynonymous SNV 0.979 2 20 hm7G_associated_SNPs_21658 0 0 1 0 1 OPTN chr10:13169903 5'GT 13169903 Upstream 34bp 20102 chr20 31424467 31424467 1 + G T UCS 31424468 + 31424448 31424488 41 TGTGGACAAATTAGTAAAAGGAAAGTTTCAGGACAATTTTG TGTGGACAAATTAGTAAAATGAAAGTTTCAGGACAATTTTG < 41bp 0.61109807647453 0.857329530717762 NA NA prediction 0.492462908486463 Functional Gain - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31424468 chr20:31424467 stopgain 1.000 1 20 hm7G_associated_SNPs_21659 0 0 1 0 1 MAPRE1 chr20:31424440 3'AG 31424440 Downstream 28bp 20103 chr2 3743913 3743913 1 + G T LUAD 3743914 + 3743894 3743934 41 GGTTGGGAAACTGCAAGAAGGCTGGACCGGCCACCAATATT GGTTGGGAAACTGCAAGAATGCTGGACCGGCCACCAATATT < 41bp 0.620174600438991 0.866395475244662 NA NA prediction 0.492441749611343 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3743914 chr2:3743913 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_21660 0 0 0 0 2 ALLC chr2:3743865 3'AG 3743865 Downstream 49bp 20104 chr2 3743913 3743913 1 + G T LUAD 3743914 + 3743894 3743934 41 GGTTGGGAAACTGCAAGAAGGCTGGACCGGCCACCAATATT GGTTGGGAAACTGCAAGAATGCTGGACCGGCCACCAATATT < 41bp 0.620174600438991 0.866395475244662 NA NA prediction 0.492441749611343 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3743914 chr2:3743913 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_21660 0 0 0 0 2 ALLC chr2:3743938 5'GT 3743938 Upstream 26bp 20105 chr8 43046701 43046701 1 + G T ESCA 43046702 + 43046682 43046722 41 GCTGGAAGGCCTGTGGCTGGGCTTGACATTCCTCCTGCCAG GCTGGAAGGCCTGTGGCTGTGCTTGACATTCCTCCTGCCAG < 41bp 0.397539204241206 0.74619509313201 NA NA prediction 0.49239018626402 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43046702 chr8:43046701 nonsynonymous SNV 0.694 0 20 hm7G_associated_SNPs_21662 0 0 1 0 2 HGSNAT chr8:43046617 3'AG 43046617 Downstream 85bp 20106 chr8 43046701 43046701 1 + G T ESCA 43046702 + 43046682 43046722 41 GCTGGAAGGCCTGTGGCTGGGCTTGACATTCCTCCTGCCAG GCTGGAAGGCCTGTGGCTGTGCTTGACATTCCTCCTGCCAG < 41bp 0.397539204241206 0.74619509313201 NA NA prediction 0.49239018626402 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43046702 chr8:43046701 nonsynonymous SNV 0.694 0 20 hm7G_associated_SNPs_21662 0 0 1 0 2 HGSNAT chr8:43046738 5'GT 43046738 Upstream 38bp 20107 chrX 65413471 65413471 1 + G T LUAD 65413472 + 65413452 65413492 41 GGAGGAAGATAGGCATCTTGGAATCCTGGGTGAGGAATTTT GGAGGAAGATAGGCATCTTTGAATCCTGGGTGAGGAATTTT < 41bp 0.408599339765572 0.74618885477113 NA NA prediction 0.492377709542261 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65413472 chrX:65413471 stopgain 1.000 1 20 hm7G_associated_SNPs_21664 0 0 1 0 1 HEPH chrX:65413480 5'GT 65413480 Upstream 10bp 20108 chr11 66838917 66838917 1 + G T GBM 66838918 + 66838898 66838938 41 CCCTCTAGGGCCAGGAGATGGCGAGGTCCGTGGGCGCGGTG CCCTCTAGGGCCAGGAGATTGCGAGGTCCGTGGGCGCGGTG < 41bp 0.624506824958149 0.870684031972754 NA NA prediction 0.49235441402921 Functional Gain - RHOD ENSG00000173156 CDS Human protein_coding chr11:66838918 chr11:66838917 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_21667 0 0 0 0 1 RHOD chr11:66838906 3'AG 66838906 Downstream 12bp 20109 chr8 38095669 38095669 1 + G T COAD 38095670 + 38095650 38095690 41 GTTCAACACCCACGGAGCAGGGTCGACCAAGAACTGTGAAG GTTCAACACCCACGGAGCATGGTCGACCAAGAACTGTGAAG < 41bp 0.405773527105292 0.746176300881163 NA NA prediction 0.492352601762326 Functional Gain - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095670 chr8:38095669 nonsynonymous SNV 0.684 4 20 hm7G_associated_SNPs_21668 0 0 1 0 2 DDHD2 chr8:38095607 3'AG 38095607 Downstream 63bp 20110 chr8 38095669 38095669 1 + G T COAD 38095670 + 38095650 38095690 41 GTTCAACACCCACGGAGCAGGGTCGACCAAGAACTGTGAAG GTTCAACACCCACGGAGCATGGTCGACCAAGAACTGTGAAG < 41bp 0.405773527105292 0.746176300881163 NA NA prediction 0.492352601762326 Functional Gain - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38095670 chr8:38095669 nonsynonymous SNV 0.684 4 20 hm7G_associated_SNPs_21668 0 0 1 0 2 DDHD2 chr8:38095727 5'GT 38095727 Upstream 59bp 20111 chr12 6955994 6955994 1 + G T COAD 6955995 + 6955975 6956015 41 TAACAGGGTGAGCTGCCTGGGAGTCACAGCTGACGGGATGG TAACAGGGTGAGCTGCCTGTGAGTCACAGCTGACGGGATGG < 41bp 0.621993697343664 0.86813872052634 NA NA prediction 0.492290046365352 Functional Gain - CDCA3;GNB3 ENSG00000111664;ENSG00000111665 CDS Human other chr12:6955995 chr12:6955994 stopgain 0.989 1 20 hm7G_associated_SNPs_21669 0 0 1 0 1 CDCA3;GNB3 chr12:6955956 3'AG 6955956 Downstream 39bp 20112 chr13 58209198 58209198 1 + G T UCEC 58209199 + 58209179 58209219 41 CACCAGCTTCACCGGACAAGGGACTAATGCAAGCGAGACCC CACCAGCTTCACCGGACAATGGACTAATGCAAGCGAGACCC < 41bp 0.417484097602494 0.74614313435528 NA NA prediction 0.49228626871056 Functional Gain - PCDH17 ENSG00000118946 CDS Human protein_coding chr13:58209199 chr13:58209198 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21670 0 0 0 0 1 PCDH17 chr13:58209245 5'GT 58209245 Upstream 48bp 20113 chr6 126319767 126319767 1 + G T UCEC 126319768 + 126319748 126319788 41 ATGTATTTTCTGTTTTGGAGGATTATGGTTTAGACCCAAAC ATGTATTTTCTGTTTTGGATGATTATGGTTTAGACCCAAAC < 41bp 0.61121020154801 0.857333058316344 NA NA prediction 0.492245713536668 Functional Gain - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126319768 chr6:126319767 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_21672 0 0 1 0 2 TRMT11 chr6:126319696 3'AG 126319696 Downstream 72bp 20114 chr6 126319767 126319767 1 + G T UCEC 126319768 + 126319748 126319788 41 ATGTATTTTCTGTTTTGGAGGATTATGGTTTAGACCCAAAC ATGTATTTTCTGTTTTGGATGATTATGGTTTAGACCCAAAC < 41bp 0.61121020154801 0.857333058316344 NA NA prediction 0.492245713536668 Functional Gain - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126319768 chr6:126319767 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_21672 0 0 1 0 2 TRMT11 chr6:126319830 5'GT 126319830 Upstream 64bp 20115 chr16 31435842 31435842 1 + G T LUAD 31435843 + 31435823 31435863 41 TGCCATTCCCATCATCATGGGCAGCTCTGTGGGGGCTCTGC TGCCATTCCCATCATCATGTGCAGCTCTGTGGGGGCTCTGC < 41bp 0.634993639639285 0.881089052606965 NA NA prediction 0.492190825935361 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31435843 chr16:31435842 nonsynonymous SNV 0.209 3 20 hm7G_associated_SNPs_21674 0 0 0 0 1 ITGAD chr16:31435788 3'AG 31435788 Downstream 55bp 20116 chr17 7910415 7910415 1 + G T LUSC 7910416 + 7910396 7910436 41 TCTTTCTTGGCTTCCTCCTGGTGGTTGGGATGGGGCTGGCT TCTTTCTTGGCTTCCTCCTTGTGGTTGGGATGGGGCTGGCT < 41bp 0.635310880783658 0.881393469567851 NA NA prediction 0.492165177568386 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7910416 chr17:7910415 synonymous SNV . 0 20 hm7G_associated_SNPs_21675 0 0 0 0 2 GUCY2D chr17:7910378 3'AG 7910378 Downstream 38bp 20117 chr17 7910415 7910415 1 + G T LUSC 7910416 + 7910396 7910436 41 TCTTTCTTGGCTTCCTCCTGGTGGTTGGGATGGGGCTGGCT TCTTTCTTGGCTTCCTCCTTGTGGTTGGGATGGGGCTGGCT < 41bp 0.635310880783658 0.881393469567851 NA NA prediction 0.492165177568386 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7910416 chr17:7910415 synonymous SNV . 0 20 hm7G_associated_SNPs_21675 0 0 0 0 2 GUCY2D chr17:7910462 5'GT 7910462 Upstream 48bp 20118 chr19 57743957 57743957 1 + G T LUSC 57743958 + 57743938 57743978 41 TATTTCCATGATGCACGCCGGGTGTACCTGATTCTGGAATA TATTTCCATGATGCACGCCTGGTGTACCTGATTCTGGAATA < 41bp 0.637129543726728 0.883211645755182 NA NA prediction 0.492164204056908 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743958 chr19:57743957 nonsynonymous SNV 0.001 4 20 hm7G_associated_SNPs_21676 0 0 1 0 2 AURKC chr19:57743910 3'AG 57743910 Downstream 48bp 20119 chr19 57743957 57743957 1 + G T LUSC 57743958 + 57743938 57743978 41 TATTTCCATGATGCACGCCGGGTGTACCTGATTCTGGAATA TATTTCCATGATGCACGCCTGGTGTACCTGATTCTGGAATA < 41bp 0.637129543726728 0.883211645755182 NA NA prediction 0.492164204056908 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743958 chr19:57743957 nonsynonymous SNV 0.001 4 20 hm7G_associated_SNPs_21676 0 0 1 0 2 AURKC chr19:57744048 5'GT 57744048 Upstream 92bp 20120 chr19 7677950 7677950 1 + G T COAD 7677951 + 7677931 7677971 41 TGGCAGATCCCGCCGCCGAGGACGAGGGAGACGGGAGCCCC TGGCAGATCCCGCCGCCGATGACGAGGGAGACGGGAGCCCC < 41bp 0.633270771026196 0.879326117343964 NA NA prediction 0.492110692635537 Functional Gain - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7677951 chr19:7677950 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_21677 0 0 1 0 1 CAMSAP3 chr19:7678049 5'GT 7678049 Upstream 100bp 20121 chr5 140076937 140076937 1 + G T LUAD 140076938 + 140076918 140076958 41 GCCACAAGGTGCCATGTGTGGGACTCAGCATTGGGGTTGAG GCCACAAGGTGCCATGTGTTGGACTCAGCATTGGGGTTGAG < 41bp 0.63247584280874 0.87852291037133 NA NA prediction 0.492094135125181 Functional Gain - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076938 chr5:140076937 synonymous SNV . 0 20 hm7G_associated_SNPs_21679 0 0 1 0 1 HARS2 chr5:140076991 5'GT 140076991 Upstream 55bp 20122 chr17 902806 902806 1 + G T UCEC 902807 + 902787 902827 41 CAGTGGCTGCATCACGGGAGGAGCTATTGGTTTCAGAGGTT CAGTGGCTGCATCACGGGATGAGCTATTGGTTTCAGAGGTT < 41bp 0.630888816038312 0.876928994721203 NA NA prediction 0.492080357365781 Functional Gain - TIMM22 ENSG00000177370 CDS Human protein_coding chr17:902807 chr17:902806 stopgain 0.998 1 20 hm7G_associated_SNPs_21680 0 0 1 0 2 TIMM22 chr17:902752 3'AG 902752 Downstream 55bp 20123 chr17 902806 902806 1 + G T UCEC 902807 + 902787 902827 41 CAGTGGCTGCATCACGGGAGGAGCTATTGGTTTCAGAGGTT CAGTGGCTGCATCACGGGATGAGCTATTGGTTTCAGAGGTT < 41bp 0.630888816038312 0.876928994721203 NA NA prediction 0.492080357365781 Functional Gain - TIMM22 ENSG00000177370 CDS Human protein_coding chr17:902807 chr17:902806 stopgain 0.998 1 20 hm7G_associated_SNPs_21680 0 0 1 0 2 TIMM22 chr17:902824 5'GT 902824 Upstream 19bp 20124 chr5 161302642 161302642 1 + G T UCEC 161302643 + 161302623 161302663 41 TGCTTGCCCACTAAAATTTGGAAGTTGTGAGTAAATTTATA TGCTTGCCCACTAAAATTTTGAAGTTGTGAGTAAATTTATA < 41bp 0.427523872116775 0.745998457822186 NA NA prediction 0.491996915644371 Functional Gain - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161302643 chr5:161302642 stopgain 0.999 1 20 hm7G_associated_SNPs_21684 0 0 0 0 2 GABRA1 chr5:161302566 3'AG 161302566 Downstream 77bp 20125 chr5 161302642 161302642 1 + G T UCEC 161302643 + 161302623 161302663 41 TGCTTGCCCACTAAAATTTGGAAGTTGTGAGTAAATTTATA TGCTTGCCCACTAAAATTTTGAAGTTGTGAGTAAATTTATA < 41bp 0.427523872116775 0.745998457822186 NA NA prediction 0.491996915644371 Functional Gain - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161302643 chr5:161302642 stopgain 0.999 1 20 hm7G_associated_SNPs_21684 0 0 0 0 2 GABRA1 chr5:161302648 5'GT 161302648 Upstream 7bp 20126 chr3 185337191 185337191 1 + G T ACC 185337192 + 185337172 185337212 41 ATCCTAAATTAAAGTCTGGGGGTTACCAAGCAGTGAAACGA ATCCTAAATTAAAGTCTGGTGGTTACCAAGCAGTGAAACGA < 41bp 0.631861722340806 0.877852371390248 NA NA prediction 0.491981298098885 Functional Gain - SENP2 ENSG00000163904 CDS Human protein_coding chr3:185337192 chr3:185337191 synonymous SNV . 0 20 hm7G_associated_SNPs_21686 0 0 0 0 1 SENP2 chr3:185337290 5'GT 185337290 Upstream 100bp 20127 chr9 134363337 134363337 1 + G T COAD 134363338 + 134363318 134363358 41 TCCATACTCGGCGTTCCCAGGCATGCAGCCCTTGGAGATGG TCCATACTCGGCGTTCCCATGCATGCAGCCCTTGGAGATGG < 41bp 0.411065885523333 0.745988954748353 NA NA prediction 0.491977909496705 Functional Gain - PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134363338 chr9:134363337 nonsynonymous SNV 0.941 3 20 hm7G_associated_SNPs_21687 0 0 1 0 1 PRRC2B chr9:134363243 3'AG 134363243 Downstream 95bp 20128 chr19 1393338 1393338 1 + G T THYM 1393339 + 1393319 1393359 41 CTACATCCCAGGTAGGGCCGGGACCGCACCGCCCACGAGGG CTACATCCCAGGTAGGGCCTGGACCGCACCGCCCACGAGGG < 41bp 0.621085522497866 0.867016773342401 NA NA prediction 0.491862501689069 Functional Gain - NDUFS7 ENSG00000115286 CDS Human protein_coding chr19:1393339 chr19:1393338 nonsynonymous SNV 0.006 2 20 hm7G_associated_SNPs_21691 0 0 1 0 1 NDUFS7 chr19:1393241 3'AG 1393241 Downstream 98bp 20129 chr17 80526060 80526060 1 + G T UCEC 80526061 + 80526041 80526081 41 AAATGAAAAGGAAGCTTCAGGTGGAGACAGCCCGAAGGTAA AAATGAAAAGGAAGCTTCATGTGGAGACAGCCCGAAGGTAA < 41bp 0.413066874566613 0.745931062207613 NA NA prediction 0.491862124415226 Functional Gain - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80526061 chr17:80526060 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_21692 0 0 1 0 1 FOXK2 chr17:80526077 5'GT 80526077 Upstream 18bp 20130 chr2 87089014 87089014 1 - C A rs531956862 87089013 - 87088993 87089033 41 TGTCTCCGCCGAGCCCCCGGGGCCAGGTGTCCCGGGCGCGC TGTCTCCGCCGAGCCCCCGTGGCCAGGTGTCCCGGGCGCGC < 41bp 0.542591553083127 0.788518374747427 NA NA prediction 0.491853643328601 Functional Gain - ANAPC1P1 ENSG00000172116 UTR5 Human protein_coding chr2:87089013 chr2:87089014 . . 0 20 hm7G_associated_SNPs_21693 0 0 0 0 1 CD8B chr2:87088946 5'GT 87088946 Upstream 69bp 20131 chr11 60230581 60230581 1 + G T LUSC 60230582 + 60230562 60230602 41 ACTGTGTGGTACCCTCTCTGGGGAGGCATTATGGTGAGTAA ACTGTGTGGTACCCTCTCTTGGGAGGCATTATGGTGAGTAA < 41bp 0.416902109219704 0.745904170720078 NA NA prediction 0.491808341440156 Functional Gain - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60230582 chr11:60230581 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21696 0 0 0 0 1 MS4A1 chr11:60230594 5'GT 60230594 Upstream 14bp 20132 chr13 24865014 24865014 1 + G T UCEC 24865015 + 24864995 24865035 41 TGCTCAAGTATACCACACAGGAACACGGGTGAGGGGCATGG TGCTCAAGTATACCACACATGAACACGGGTGAGGGGCATGG < 41bp 0.42429184662692 0.745900588872202 NA NA prediction 0.491801177744404 Functional Gain - SPATA13 ENSG00000182957;ENSG00000273167 CDS Human other chr13:24865015 chr13:24865014 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21697 0 0 0 0 1 SPATA13 chr13:24865022 5'GT 24865022 Upstream 9bp 20133 chr18 66564490 66564490 1 + G T LUAD 66564491 + 66564471 66564511 41 GCTGAAAATACCTCGGAGTGGGACAAGAGGGAAATACTTGA GCTGAAAATACCTCGGAGTTGGACAAGAGGGAAATACTTGA < 41bp 0.619405967113604 0.865304813217416 NA NA prediction 0.491797692207625 Functional Gain - CCDC102B ENSG00000150636 CDS Human protein_coding chr18:66564491 chr18:66564490 nonsynonymous SNV 0.851 3 20 hm7G_associated_SNPs_21698 0 0 0 0 1 CCDC102B chr18:66564456 3'AG 66564456 Downstream 35bp 20134 chrX 73749100 73749100 1 + G T OV 73749101 + 73749081 73749121 41 ATGATGATTCCCCTGTGCCGGGACTTCGGGGGCCTTATCGT ATGATGATTCCCCTGTGCCTGGACTTCGGGGGCCTTATCGT < 41bp 0.639150853108729 0.885039364390509 NA NA prediction 0.491777022563559 Functional Gain - SLC16A2 ENSG00000147100 CDS Human protein_coding chrX:73749101 chrX:73749100 nonsynonymous SNV 0.976 0 20 hm7G_associated_SNPs_21699 0 0 0 0 1 SLC16A2 chrX:73749048 3'AG 73749048 Downstream 53bp 20135 chr10 71695112 71695112 1 + G T LUSC 71695113 + 71695093 71695133 41 CTTTGGCTTTTAGGTTCCTGGGCTGCCAGGGCCAGAGGGGC CTTTGGCTTTTAGGTTCCTTGGCTGCCAGGGCCAGAGGGGC < 41bp 0.409852405859117 0.745883141972412 NA NA prediction 0.491766283944824 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695113 chr10:71695112 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_21701 0 0 0 0 2 COL13A1 chr10:71695106 3'AG 71695106 Downstream 7bp 20136 chr10 71695112 71695112 1 + G T LUSC 71695113 + 71695093 71695133 41 CTTTGGCTTTTAGGTTCCTGGGCTGCCAGGGCCAGAGGGGC CTTTGGCTTTTAGGTTCCTTGGCTGCCAGGGCCAGAGGGGC < 41bp 0.409852405859117 0.745883141972412 NA NA prediction 0.491766283944824 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695113 chr10:71695112 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_21701 0 0 0 0 2 COL13A1 chr10:71695147 5'GT 71695147 Upstream 36bp 20137 chr4 76691623 76691623 1 + G T UCEC 76691624 + 76691604 76691644 41 CAAGACAGAGTGAAGATTTGGGAAGCCAATTTACAGAAATT CAAGACAGAGTGAAGATTTTGGAAGCCAATTTACAGAAATT < 41bp 0.429017358591582 0.745876126713354 NA NA prediction 0.491752253426708 Functional Gain - USO1 ENSG00000138768 CDS Human protein_coding chr4:76691624 chr4:76691623 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21702 0 0 1 0 2 USO1 chr4:76691592 3'AG 76691592 Downstream 32bp 20138 chr4 76691623 76691623 1 + G T UCEC 76691624 + 76691604 76691644 41 CAAGACAGAGTGAAGATTTGGGAAGCCAATTTACAGAAATT CAAGACAGAGTGAAGATTTTGGAAGCCAATTTACAGAAATT < 41bp 0.429017358591582 0.745876126713354 NA NA prediction 0.491752253426708 Functional Gain - USO1 ENSG00000138768 CDS Human protein_coding chr4:76691624 chr4:76691623 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21702 0 0 1 0 2 USO1 chr4:76691692 5'GT 76691692 Upstream 70bp 20139 chr17 4435852 4435852 1 + G T STAD 4435853 + 4435833 4435873 41 GCAGGTGTCCCCTGTCCTGGGCATGATCACAGGAACACTCA GCAGGTGTCCCCTGTCCTGTGCATGATCACAGGAACACTCA < 41bp 0.647646230542699 0.893496116349053 NA NA prediction 0.491699771612708 Functional Gain - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4435853 chr17:4435852 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_21704 0 0 0 0 1 SPNS2 chr17:4435837 3'AG 4435837 Downstream 16bp 20140 chr6 158342609 158342609 1 + G T UCEC 158342610 + 158342590 158342630 41 TGCGCATGGAGAGACTTCAGGCCTGGATGACCAGGATGTGT TGCGCATGGAGAGACTTCATGCCTGGATGACCAGGATGTGT < 41bp 0.632193557189732 0.878015100095919 NA NA prediction 0.491643085812373 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158342610 chr6:158342609 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_21705 0 0 1 0 2 SNX9 chr6:158342563 3'AG 158342563 Downstream 47bp 20141 chr6 158342609 158342609 1 + G T UCEC 158342610 + 158342590 158342630 41 TGCGCATGGAGAGACTTCAGGCCTGGATGACCAGGATGTGT TGCGCATGGAGAGACTTCATGCCTGGATGACCAGGATGTGT < 41bp 0.632193557189732 0.878015100095919 NA NA prediction 0.491643085812373 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158342610 chr6:158342609 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_21705 0 0 1 0 2 SNX9 chr6:158342693 5'GT 158342693 Upstream 85bp 20142 chr11 62433867 62433867 1 + G T UCEC 62433868 + 62433848 62433888 41 CCCTCCAACCGTGCCCACAGGCTCACTGGCTGATAGTTGCC CCCTCCAACCGTGCCCACATGCTCACTGGCTGATAGTTGCC < 41bp 0.638996284733849 0.884810683750587 NA NA prediction 0.491628798033475 Functional Gain - METTL12 ENSG00000214756 splicing Human other chr11:62433868 chr11:62433867 . 0.292 0 20 hm7G_associated_SNPs_21707 0 0 0 0 1 LBHD1;METTL12 chr11:62433826 3'AG 62433826 Downstream 42bp 20143 chr4 159606354 159606354 1 + G T UCEC 159606355 + 159606335 159606375 41 TGGTGTTGAAGTATACCCTGGTTATGCAGCTGCTGAGGTTT TGGTGTTGAAGTATACCCTTGTTATGCAGCTGCTGAGGTTT < 41bp 0.411933487404261 0.745796300916694 NA NA prediction 0.491592601833387 Functional Gain - ETFDH ENSG00000171503 CDS Human protein_coding chr4:159606355 chr4:159606354 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21708 0 0 1 0 2 ETFDH chr4:159606304 3'AG 159606304 Downstream 51bp 20144 chr4 159606354 159606354 1 + G T UCEC 159606355 + 159606335 159606375 41 TGGTGTTGAAGTATACCCTGGTTATGCAGCTGCTGAGGTTT TGGTGTTGAAGTATACCCTTGTTATGCAGCTGCTGAGGTTT < 41bp 0.411933487404261 0.745796300916694 NA NA prediction 0.491592601833387 Functional Gain - ETFDH ENSG00000171503 CDS Human protein_coding chr4:159606355 chr4:159606354 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21708 0 0 1 0 2 ETFDH chr4:159606371 5'GT 159606371 Upstream 18bp 20145 chr1 154302881 154302881 1 + G T STAD 154302882 + 154302862 154302902 41 TTTGTTGCAGAAGAAGAAAGGAGGGCGCGGGCTAATGACCG TTTGTTGCAGAAGAAGAAATGAGGGCGCGGGCTAATGACCG < 41bp 0.627984260723314 0.873776239676181 NA NA prediction 0.491583957905734 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154302882 chr1:154302881 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21709 0 0 1 0 2 ATP8B2 chr1:154302872 3'AG 154302872 Downstream 10bp 20146 chr1 154302881 154302881 1 + G T STAD 154302882 + 154302862 154302902 41 TTTGTTGCAGAAGAAGAAAGGAGGGCGCGGGCTAATGACCG TTTGTTGCAGAAGAAGAAATGAGGGCGCGGGCTAATGACCG < 41bp 0.627984260723314 0.873776239676181 NA NA prediction 0.491583957905734 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154302882 chr1:154302881 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21709 0 0 1 0 2 ATP8B2 chr1:154302930 5'GT 154302930 Upstream 50bp 20147 chr4 3447966 3447966 1 + G T UCEC 3447967 + 3447947 3447987 41 CGGGGACAGCTTCTGCGCCGGGAGCCTGGTCCACACCTGCT CGGGGACAGCTTCTGCGCCTGGAGCCTGGTCCACACCTGCT < 41bp 0.636063916842686 0.881841637453367 NA NA prediction 0.491555441221361 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3447967 chr4:3447966 nonsynonymous SNV 0.058 5 20 hm7G_associated_SNPs_21710 0 0 1 0 1 HGFAC chr4:3448021 5'GT 3448021 Upstream 56bp 20148 chr1 192335066 192335066 1 + G T LUAD 192335067 + 192335047 192335087 41 ACAGATTAACATTGACTTCGGTACCAGAGACCTCATCTCAA ACAGATTAACATTGACTTCTGTACCAGAGACCTCATCTCAA < 41bp 0.559958885272968 0.805700270803619 NA NA prediction 0.491482771061303 Functional Gain - RGS21 ENSG00000253148 CDS Human protein_coding chr1:192335067 chr1:192335066 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_21715 0 0 0 0 1 RGS21 chr1:192335051 3'AG 192335051 Downstream 16bp 20149 chr15 101597206 101597206 1 + G T LUAD 101597207 + 101597187 101597227 41 CCGGAGGAAGTGCAGTTCCGGCGACTGCAGGCGCTCATGAT CCGGAGGAAGTGCAGTTCCTGCGACTGCAGGCGCTCATGAT < 41bp 0.40188941221167 0.745726558867139 NA NA prediction 0.491453117734277 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101597207 chr15:101597206 nonsynonymous SNV 0.712 0 20 hm7G_associated_SNPs_21716 0 0 0 0 1 LRRK1 chr15:101597255 5'GT 101597255 Upstream 50bp 20150 chrX 21887675 21887675 1 + G T UCEC 21887676 + 21887656 21887696 41 ACCTTGTCACCCATCTACAGGATTGTCCTGTTACTAATGTG ACCTTGTCACCCATCTACATGATTGTCCTGTTACTAATGTG < 41bp 0.415288862373191 0.745722408783754 NA NA prediction 0.491444817567509 Functional Gain - MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21887676 chrX:21887675 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21717 0 0 1 0 1 MBTPS2 chrX:21887616 3'AG 21887616 Downstream 60bp 20151 chr10 72636413 72636413 1 + G T STAD 72636414 + 72636394 72636434 41 TCCTAAAGCGAAGACCACAGGAATGGTAGGGACACTTGGAG TCCTAAAGCGAAGACCACATGAATGGTAGGGACACTTGGAG < 41bp 0.62244049393661 0.868159912820827 NA NA prediction 0.491438837768433 Functional Gain - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72636414 chr10:72636413 stopgain 1.000 1 20 hm7G_associated_SNPs_21718 0 0 0 0 1 SGPL1 chr10:72636418 5'GT 72636418 Upstream 6bp 20152 chrX 135593045 135593045 1 + G T UCEC 135593046 + 135593026 135593066 41 TGCTCCTGAGGCCAACAGAGGCCTTAGGCGTTCAGATTCTG TGCTCCTGAGGCCAACAGATGCCTTAGGCGTTCAGATTCTG < 41bp 0.626990470066044 0.872705333038252 NA NA prediction 0.491429725944416 Functional Gain - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135593046 chrX:135593045 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_21719 0 0 1 0 1 HTATSF1 chrX:135592967 3'AG 135592967 Downstream 79bp 20153 chr2 219248992 219248992 1 + G T UCEC 219248993 + 219248973 219249013 41 TCAGCCTGCGGAAGCTATGGGCCTTCACGGGGCCTGGCTTC TCAGCCTGCGGAAGCTATGTGCCTTCACGGGGCCTGGCTTC < 41bp 0.574786024162315 0.820495463232571 NA NA prediction 0.491418878140513 Functional Gain - SLC11A1 ENSG00000018280 CDS Human protein_coding chr2:219248993 chr2:219248992 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21720 0 0 0 0 2 SLC11A1 chr2:219248966 3'AG 219248966 Downstream 27bp 20154 chr2 219248992 219248992 1 + G T UCEC 219248993 + 219248973 219249013 41 TCAGCCTGCGGAAGCTATGGGCCTTCACGGGGCCTGGCTTC TCAGCCTGCGGAAGCTATGTGCCTTCACGGGGCCTGGCTTC < 41bp 0.574786024162315 0.820495463232571 NA NA prediction 0.491418878140513 Functional Gain - SLC11A1 ENSG00000018280 CDS Human protein_coding chr2:219248993 chr2:219248992 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21720 0 0 0 0 2 SLC11A1 chr2:219249088 5'GT 219249088 Upstream 97bp 20155 chr7 55241707 55241707 1 + G T GBM 55241708 + 55241688 55241728 41 CAAAAAGATCAAAGTGCTGGGCTCCGGTGCGTTCGGCACGG CAAAAAGATCAAAGTGCTGTGCTCCGGTGCGTTCGGCACGG < 41bp 0.410571252888212 0.745705778638757 NA NA prediction 0.491411557277515 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55241708 chr7:55241707 nonsynonymous SNV 0.661 4 20 hm7G_associated_SNPs_21721 4 0 1 0 2 EGFR chr7:55241614 3'AG 55241614 Downstream 94bp 20156 chr7 55241707 55241707 1 + G T GBM 55241708 + 55241688 55241728 41 CAAAAAGATCAAAGTGCTGGGCTCCGGTGCGTTCGGCACGG CAAAAAGATCAAAGTGCTGTGCTCCGGTGCGTTCGGCACGG < 41bp 0.410571252888212 0.745705778638757 NA NA prediction 0.491411557277515 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55241708 chr7:55241707 nonsynonymous SNV 0.661 4 20 hm7G_associated_SNPs_21721 4 0 1 0 2 EGFR chr7:55241736 5'GT 55241736 Upstream 30bp 20157 chr11 88961012 88961012 1 + G T LUAD 88961013 + 88960993 88961033 41 TTTGCTAGTCCACTTACTGGGATAGCGGATGCCTCTCAAAG TTTGCTAGTCCACTTACTGTGATAGCGGATGCCTCTCAAAG < 41bp 0.429632013799053 0.745702478041115 NA NA prediction 0.49140495608223 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88961013 chr11:88961012 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21722 0 0 0 0 1 TYR chr11:88960991 3'AG 88960991 Downstream 22bp 20158 chr1 200014605 200014605 1 + G T COAD 200014606 + 200014586 200014626 41 ACAGTCCAAAATAATAAAAGGTACACATGTATAGAAAACCA ACAGTCCAAAATAATAAAATGTACACATGTATAGAAAACCA < 41bp 0.440905430227908 0.745691508848846 NA NA prediction 0.491383017697691 Functional Gain - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200014606 chr1:200014605 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21724 0 0 0 0 1 NR5A2 chr1:200014571 3'AG 200014571 Downstream 35bp 20159 chrX 69626862 69626862 1 + G T SARC 69626863 + 69626843 69626883 41 GTGATGGTGATGATGATGAGGGGGATGACGAGGAATGGAAG GTGATGGTGATGATGATGATGGGGATGACGAGGAATGGAAG < 41bp 0.6314277210168 0.877088143920017 NA NA prediction 0.491320845806434 Functional Gain - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69626863 chrX:69626862 nonsynonymous SNV 0.768 0 20 hm7G_associated_SNPs_21727 0 0 0 0 1 KIF4A chrX:69626925 5'GT 69626925 Upstream 64bp 20160 chr14 21966442 21966442 1 - C A STAD 21966441 - 21966421 21966461 41 GTTGCACGGTTCAAGCAAAGGTACCCAGATGGTATCATCTC GTTGCACGGTTCAAGCAAATGTACCCAGATGGTATCATCTC < 41bp 0.610400348727054 0.85605376652377 NA NA prediction 0.491306835593433 Functional Gain - METTL3 ENSG00000165819 CDS Human protein_coding chr14:21966441 chr14:21966442 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21729 0 0 1 0 1 METTL3 chr14:21966513 3'AG 21966513 Downstream 72bp 20161 chr2 179255896 179255896 1 + G T COAD 179255897 + 179255877 179255917 41 GTTTGGAAAGTGGCATGAAGGACTCTACTGTGGTGTGGCCC GTTTGGAAAGTGGCATGAATGACTCTACTGTGGTGTGGCCC < 41bp 0.418893351154617 0.745635438299827 NA NA prediction 0.491270876599655 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179255897 chr2:179255896 stopgain 0.996 1 20 hm7G_associated_SNPs_21731 0 0 1 0 2 OSBPL6 chr2:179255800 3'AG 179255800 Downstream 97bp 20162 chr2 179255896 179255896 1 + G T COAD 179255897 + 179255877 179255917 41 GTTTGGAAAGTGGCATGAAGGACTCTACTGTGGTGTGGCCC GTTTGGAAAGTGGCATGAATGACTCTACTGTGGTGTGGCCC < 41bp 0.418893351154617 0.745635438299827 NA NA prediction 0.491270876599655 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179255897 chr2:179255896 stopgain 0.996 1 20 hm7G_associated_SNPs_21731 0 0 1 0 2 OSBPL6 chr2:179255944 5'GT 179255944 Upstream 49bp 20163 chr4 110920855 110920855 1 + G T LUAD 110920856 + 110920836 110920876 41 TGTGTTGTTGGCTACATCGGGGAGCGATGTCAGTACCGAGA TGTGTTGTTGGCTACATCGTGGAGCGATGTCAGTACCGAGA < 41bp 0.629814110623002 0.875431877824624 NA NA prediction 0.491235534403243 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110920856 chr4:110920855 nonsynonymous SNV 0.983 5 20 hm7G_associated_SNPs_21733 0 0 0 0 1 EGF chr4:110920835 3'AG 110920835 Downstream 21bp 20164 chr10 28966829 28966829 1 + G T UCEC 28966830 + 28966810 28966850 41 GGCCGTGCGGGGCGTCAATGGATCGCCACTCCAGCTACATC GGCCGTGCGGGGCGTCAATTGATCGCCACTCCAGCTACATC < 41bp 0.435619399527372 0.745610113993112 NA NA prediction 0.491220227986224 Functional Gain - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28966830 chr10:28966829 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21734 0 0 1 0 1 BAMBI chr10:28966902 5'GT 28966902 Upstream 74bp 20165 chr12 4657954 4657954 1 + G T LUAD 4657955 + 4657935 4657975 41 GAGGAAGATTCTTCTGGAAGGCAGTGATGGTGATAGTGCTA GAGGAAGATTCTTCTGGAATGCAGTGATGGTGATAGTGCTA < 41bp 0.626073675239133 0.87168292430664 NA NA prediction 0.491218498135013 Functional Gain - RAD51AP1 ENSG00000111247 CDS Human protein_coding chr12:4657955 chr12:4657954 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21736 0 0 1 0 1 RAD51AP1 chr12:4658002 5'GT 4658002 Upstream 49bp 20166 chr4 158233975 158233975 1 + G T STAD 158233976 + 158233956 158233996 41 CTGGAGTTAAAAAAGGAACGGCGTGTAATTCTGGACTGTGA CTGGAGTTAAAAAAGGAACTGCGTGTAATTCTGGACTGTGA < 41bp 0.44188909636935 0.745603679505706 NA NA prediction 0.491207359011413 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158233976 chr4:158233975 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_21737 0 0 0 0 1 GRIA2 chr4:158234027 5'GT 158234027 Upstream 53bp 20167 chr16 5064936 5064936 1 + G T LUSC 5064937 + 5064917 5064957 41 CACCTCGTCCTCCTCCTCCGGCCAGTCTCATAGCAGCTCCC CACCTCGTCCTCCTCCTCCTGCCAGTCTCATAGCAGCTCCC < 41bp 0.420650903416421 0.745591060942022 NA NA prediction 0.491182121884043 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5064937 chr16:5064936 nonsynonymous SNV 0.326 2 20 hm7G_associated_SNPs_21738 0 0 0 0 1 SEC14L5 chr16:5064860 3'AG 5064860 Downstream 77bp 20168 chr12 121432065 121432065 1 + G T SARC 121432066 + 121432046 121432086 41 TACAACTGGTTTGCCAACCGGCGCAAAGAAGAAGCCTTCCG TACAACTGGTTTGCCAACCTGCGCAAAGAAGAAGCCTTCCG < 41bp 0.632846197166269 0.878399318679746 NA NA prediction 0.491106243026954 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121432066 chr12:121432065 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_21742 0 0 0 0 1 HNF1A chr12:121431967 3'AG 121431967 Downstream 99bp 20169 chr1 164789390 164789390 1 + G T LUAD 164789391 + 164789371 164789411 41 AATGGGGATTCTTACCAAGGGGCCCAGGTTGGAGCCAACGT AATGGGGATTCTTACCAAGTGGCCCAGGTTGGAGCCAACGT < 41bp 0.419786620784919 0.745531434387852 NA NA prediction 0.491062868775704 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789391 chr1:164789390 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21746 0 0 0 0 2 PBX1 chr1:164789309 3'AG 164789309 Downstream 82bp 20170 chr1 164789390 164789390 1 + G T LUAD 164789391 + 164789371 164789411 41 AATGGGGATTCTTACCAAGGGGCCCAGGTTGGAGCCAACGT AATGGGGATTCTTACCAAGTGGCCCAGGTTGGAGCCAACGT < 41bp 0.419786620784919 0.745531434387852 NA NA prediction 0.491062868775704 Functional Gain - PBX1 ENSG00000185630 CDS Human protein_coding chr1:164789391 chr1:164789390 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21746 0 0 0 0 2 PBX1 chr1:164789421 5'GT 164789421 Upstream 32bp 20171 chr4 47583986 47583986 1 + G T LUAD 47583987 + 47583967 47584007 41 CTCTTTGTAGACCTACCAGGGCTCAGATACTGACATCTTTG CTCTTTGTAGACCTACCAGTGCTCAGATACTGACATCTTTG < 41bp 0.410173778496845 0.74551870866621 NA NA prediction 0.491037417332421 Functional Gain - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47583987 chr4:47583986 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_21747 0 0 0 0 2 ATP10D chr4:47583977 3'AG 47583977 Downstream 10bp 20172 chr4 47583986 47583986 1 + G T LUAD 47583987 + 47583967 47584007 41 CTCTTTGTAGACCTACCAGGGCTCAGATACTGACATCTTTG CTCTTTGTAGACCTACCAGTGCTCAGATACTGACATCTTTG < 41bp 0.410173778496845 0.74551870866621 NA NA prediction 0.491037417332421 Functional Gain - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47583987 chr4:47583986 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_21747 0 0 0 0 2 ATP10D chr4:47584081 5'GT 47584081 Upstream 96bp 20173 chr19 50931390 50931390 1 + G T OV 50931391 + 50931371 50931411 41 GTGGGTGGAGCCAGGCGCCGGCGTCTTCCAGTTCTCCTCCA GTGGGTGGAGCCAGGCGCCTGCGTCTTCCAGTTCTCCTCCA < 41bp 0.412338234021748 0.745514022655503 NA NA prediction 0.491028045311006 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50931391 chr19:50931390 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21748 0 0 0 3 1 SPIB chr19:50931295 3'AG 50931295 Downstream 96bp 20174 chr7 150417222 150417222 1 + G T SKCM 150417223 + 150417203 150417243 41 GGCCGGGAAGAGCGCCACTGGGAACAGCATCCTGGGCCAGA GGCCGGGAAGAGCGCCACTTGGAACAGCATCCTGGGCCAGA < 41bp 0.641815812899889 0.887326533823663 NA NA prediction 0.491021441847548 Functional Gain - GIMAP1;GIMAP1-GIMAP5 ENSG00000213203 CDS Human protein_coding chr7:150417223 chr7:150417222 nonsynonymous SNV 0.480 3 20 hm7G_associated_SNPs_21749 0 0 0 0 1 GIMAP1;GIMAP1-GIMAP5 chr7:150417136 3'AG 150417136 Downstream 87bp 20175 chr20 2411617 2411617 1 + G T LUAD 2411618 + 2411598 2411638 41 CCCTCATAGAGAGAGTGAAGGACTGTGCGCTGATGGTGGAG CCCTCATAGAGAGAGTGAATGACTGTGCGCTGATGGTGGAG < 41bp 0.636229285041169 0.881735292902558 NA NA prediction 0.491012015722778 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2411618 chr20:2411617 nonsynonymous SNV 0.930 0 20 hm7G_associated_SNPs_21750 0 0 0 0 2 TGM6 chr20:2411540 3'AG 2411540 Downstream 78bp 20176 chr20 2411617 2411617 1 + G T LUAD 2411618 + 2411598 2411638 41 CCCTCATAGAGAGAGTGAAGGACTGTGCGCTGATGGTGGAG CCCTCATAGAGAGAGTGAATGACTGTGCGCTGATGGTGGAG < 41bp 0.636229285041169 0.881735292902558 NA NA prediction 0.491012015722778 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2411618 chr20:2411617 nonsynonymous SNV 0.930 0 20 hm7G_associated_SNPs_21750 0 0 0 0 2 TGM6 chr20:2411673 5'GT 2411673 Upstream 57bp 20177 chr12 19665384 19665384 1 + G T UCEC 19665385 + 19665365 19665405 41 ATCAAACTTTTGCTTCATTGGATGCCTGAAGACATGTAAGT ATCAAACTTTTGCTTCATTTGATGCCTGAAGACATGTAAGT < 41bp 0.437641886509689 0.745489165185141 NA NA prediction 0.490978330370282 Functional Gain - AEBP2 ENSG00000139154 CDS Human protein_coding chr12:19665385 chr12:19665384 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21753 0 0 1 0 2 AEBP2 chr12:19665332 3'AG 19665332 Downstream 53bp 20178 chr12 19665384 19665384 1 + G T UCEC 19665385 + 19665365 19665405 41 ATCAAACTTTTGCTTCATTGGATGCCTGAAGACATGTAAGT ATCAAACTTTTGCTTCATTTGATGCCTGAAGACATGTAAGT < 41bp 0.437641886509689 0.745489165185141 NA NA prediction 0.490978330370282 Functional Gain - AEBP2 ENSG00000139154 CDS Human protein_coding chr12:19665385 chr12:19665384 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21753 0 0 1 0 2 AEBP2 chr12:19665399 5'GT 19665399 Upstream 16bp 20179 chr1 33955172 33955172 1 + G T UCEC 33955173 + 33955153 33955193 41 GCTCTGTAAAGACCCCCCAGGAGACGACTGTGGGAACAGCG GCTCTGTAAAGACCCCCCATGAGACGACTGTGGGAACAGCG < 41bp 0.401091918988864 0.745486818623627 NA NA prediction 0.490973637247254 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33955173 chr1:33955172 stopgain 0.115 0 20 hm7G_associated_SNPs_21754 0 0 0 0 2 ZSCAN20 chr1:33955118 3'AG 33955118 Downstream 55bp 20180 chr1 33955172 33955172 1 + G T UCEC 33955173 + 33955153 33955193 41 GCTCTGTAAAGACCCCCCAGGAGACGACTGTGGGAACAGCG GCTCTGTAAAGACCCCCCATGAGACGACTGTGGGAACAGCG < 41bp 0.401091918988864 0.745486818623627 NA NA prediction 0.490973637247254 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33955173 chr1:33955172 stopgain 0.115 0 20 hm7G_associated_SNPs_21754 0 0 0 0 2 ZSCAN20 chr1:33955202 5'GT 33955202 Upstream 31bp 20181 chr5 127510273 127510273 1 + G T LIHC 127510274 + 127510254 127510294 41 AGAAATCTCCTGGCACCAAGGATGTGGTAGTAAGTGTGGAA AGAAATCTCCTGGCACCAATGATGTGGTAGTAAGTGTGGAA < 41bp 0.423078598378857 0.745475918942945 NA NA prediction 0.490951837885889 Functional Gain - SLC12A2 ENSG00000064651 CDS Human protein_coding chr5:127510274 chr5:127510273 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21755 0 0 1 0 2 SLC12A2 chr5:127510233 3'AG 127510233 Downstream 41bp 20182 chr5 127510273 127510273 1 + G T LIHC 127510274 + 127510254 127510294 41 AGAAATCTCCTGGCACCAAGGATGTGGTAGTAAGTGTGGAA AGAAATCTCCTGGCACCAATGATGTGGTAGTAAGTGTGGAA < 41bp 0.423078598378857 0.745475918942945 NA NA prediction 0.490951837885889 Functional Gain - SLC12A2 ENSG00000064651 CDS Human protein_coding chr5:127510274 chr5:127510273 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21755 0 0 1 0 2 SLC12A2 chr5:127510358 5'GT 127510358 Upstream 86bp 20183 chr11 1901341 1901341 1 + G T UCEC 1901342 + 1901322 1901362 41 CTGCTCAGTGGAGCGTGGAGGACGAGGAGGAGGCCGTCCAC CTGCTCAGTGGAGCGTGGATGACGAGGAGGAGGCCGTCCAC < 41bp 0.638175470919145 0.883641823086605 NA NA prediction 0.490932704334919 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1901342 chr11:1901341 nonsynonymous SNV 0.095 0 20 hm7G_associated_SNPs_21756 0 0 0 0 1 LSP1 chr11:1901317 3'AG 1901317 Downstream 25bp 20184 chr1 44680069 44680069 1 + G T STAD 44680070 + 44680050 44680090 41 TGACTTTCAAGAGGCCCGAGGGCATGCACCGGGAAGTCTAT TGACTTTCAAGAGGCCCGATGGCATGCACCGGGAAGTCTAT < 41bp 0.640851507043001 0.886317634825953 NA NA prediction 0.490932255565904 Functional Gain - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44680070 chr1:44680069 nonsynonymous SNV 0.946 3 20 hm7G_associated_SNPs_21757 0 0 1 0 1 DMAP1 chr1:44680022 3'AG 44680022 Downstream 48bp 20185 chr19 57705287 57705287 1 + G T COAD 57705288 + 57705268 57705308 41 CTGTGACTTTCACCAAGGAGGAGTGGGGGCAGCTGGACCTA CTGTGACTTTCACCAAGGATGAGTGGGGGCAGCTGGACCTA < 41bp 0.632342332796079 0.877799389829457 NA NA prediction 0.490914114066756 Functional Gain - ZNF264 ENSG00000083844 CDS Human protein_coding chr19:57705288 chr19:57705287 nonsynonymous SNV 0.495 3 20 hm7G_associated_SNPs_21759 0 0 1 0 2 ZNF264 chr19:57705243 3'AG 57705243 Downstream 45bp 20186 chr19 57705287 57705287 1 + G T COAD 57705288 + 57705268 57705308 41 CTGTGACTTTCACCAAGGAGGAGTGGGGGCAGCTGGACCTA CTGTGACTTTCACCAAGGATGAGTGGGGGCAGCTGGACCTA < 41bp 0.632342332796079 0.877799389829457 NA NA prediction 0.490914114066756 Functional Gain - ZNF264 ENSG00000083844 CDS Human protein_coding chr19:57705288 chr19:57705287 nonsynonymous SNV 0.495 3 20 hm7G_associated_SNPs_21759 0 0 1 0 2 ZNF264 chr19:57705369 5'GT 57705369 Upstream 83bp 20187 chr22 31013475 31013475 1 + G T STAD 31013476 + 31013456 31013496 41 GAAGGCCCATGAGTTAGGAGGATTCACGTGAGACTCCCACC GAAGGCCCATGAGTTAGGATGATTCACGTGAGACTCCCACC < 41bp 0.637931447079158 0.883385199325952 NA NA prediction 0.490907504493588 Functional Gain - TCN2 ENSG00000185339 CDS Human protein_coding chr22:31013476 chr22:31013475 stopgain 0.953 0 20 hm7G_associated_SNPs_21760 1 0 1 0 1 TCN2 chr22:31013482 5'GT 31013482 Upstream 8bp 20188 chr14 78353522 78353522 1 + G T LUAD 78353523 + 78353503 78353543 41 GCAGTGCTGCATGATGGGCGGACGGTGGCCGTGAAGGTCCA GCAGTGCTGCATGATGGGCTGACGGTGGCCGTGAAGGTCCA < 41bp 0.622631514100576 0.868068831292064 NA NA prediction 0.490874634382975 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78353523 chr14:78353522 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_21761 0 0 0 0 2 ADCK1 chr14:78353434 3'AG 78353434 Downstream 89bp 20189 chr14 78353522 78353522 1 + G T LUAD 78353523 + 78353503 78353543 41 GCAGTGCTGCATGATGGGCGGACGGTGGCCGTGAAGGTCCA GCAGTGCTGCATGATGGGCTGACGGTGGCCGTGAAGGTCCA < 41bp 0.622631514100576 0.868068831292064 NA NA prediction 0.490874634382975 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78353523 chr14:78353522 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_21761 0 0 0 0 2 ADCK1 chr14:78353592 5'GT 78353592 Upstream 71bp 20190 chr20 10286806 10286806 1 + G T LUAD 10286807 + 10286787 10286827 41 ACAAAACCAGAATTGATGAGGCCAACCAACGTGCAACAAAG ACAAAACCAGAATTGATGATGCCAACCAACGTGCAACAAAG < 41bp 0.615060379320131 0.860487128938892 NA NA prediction 0.490853499237523 Functional Gain - SNAP25 ENSG00000132639 CDS Human protein_coding chr20:10286807 chr20:10286806 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21763 0 0 1 0 1 SNAP25 chr20:10286777 3'AG 10286777 Downstream 30bp 20191 chr3 9783714 9783714 1 + G T STAD 9783715 + 9783695 9783735 41 TTTTTCTATGTTAGATCAAGGTTCAGCAGATTGCCATGGAG TTTTTCTATGTTAGATCAATGTTCAGCAGATTGCCATGGAG < 41bp 0.417158954650932 0.745414217298164 NA NA prediction 0.490828434596327 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9783715 chr3:9783714 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_21764 0 0 1 0 1 BRPF1 chr3:9783709 3'AG 9783709 Downstream 6bp 20192 chr1 86939492 86939492 1 + G T SARC 86939493 + 86939473 86939513 41 TGGGCAACTGTGGAGAGAAGGGTGAAAGGATCCACCTCACT TGGGCAACTGTGGAGAGAATGGTGAAAGGATCCACCTCACT < 41bp 0.631520175502883 0.876924206150949 NA NA prediction 0.490808061296131 Functional Gain - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86939493 chr1:86939492 nonsynonymous SNV 0.655 1 20 hm7G_associated_SNPs_21766 0 0 0 0 2 CLCA1 chr1:86939412 3'AG 86939412 Downstream 81bp 20193 chr1 86939492 86939492 1 + G T SARC 86939493 + 86939473 86939513 41 TGGGCAACTGTGGAGAGAAGGGTGAAAGGATCCACCTCACT TGGGCAACTGTGGAGAGAATGGTGAAAGGATCCACCTCACT < 41bp 0.631520175502883 0.876924206150949 NA NA prediction 0.490808061296131 Functional Gain - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86939493 chr1:86939492 nonsynonymous SNV 0.655 1 20 hm7G_associated_SNPs_21766 0 0 0 0 2 CLCA1 chr1:86939559 5'GT 86939559 Upstream 68bp 20194 chr13 25263465 25263465 1 + G T UCEC 25263466 + 25263446 25263486 41 TCTTTGCTTATTACCAAGAGGCAAAAAGCACCAACATCATG TCTTTGCTTATTACCAAGATGCAAAAAGCACCAACATCATG < 41bp 0.63725127687279 0.88265480118374 NA NA prediction 0.490807048621899 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25263466 chr13:25263465 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21767 0 0 0 0 2 ATP12A chr13:25263400 3'AG 25263400 Downstream 66bp 20195 chr13 25263465 25263465 1 + G T UCEC 25263466 + 25263446 25263486 41 TCTTTGCTTATTACCAAGAGGCAAAAAGCACCAACATCATG TCTTTGCTTATTACCAAGATGCAAAAAGCACCAACATCATG < 41bp 0.63725127687279 0.88265480118374 NA NA prediction 0.490807048621899 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25263466 chr13:25263465 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21767 0 0 0 0 2 ATP12A chr13:25263513 5'GT 25263513 Upstream 49bp 20196 chr7 138978072 138978072 1 + G T SARC 138978073 + 138978053 138978093 41 CAAAATGTGACTCCTTTTGGGATGCTGGGTGGCCTTGTTCC CAAAATGTGACTCCTTTTGTGATGCTGGGTGGCCTTGTTCC < 41bp 0.432629668714784 0.745402184037778 NA NA prediction 0.490804368075557 Functional Gain - UBN2 ENSG00000157741 CDS Human protein_coding chr7:138978073 chr7:138978072 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21768 0 0 1 0 1 UBN2 chr7:138977978 3'AG 138977978 Downstream 95bp 20197 chr1 171173137 171173137 1 + G T LUAD 171173138 + 171173118 171173158 41 CCACGAACAGCTGTAAAATGGATGATAGAACAACAGATGAA CCACGAACAGCTGTAAAATTGATGATAGAACAACAGATGAA < 41bp 0.618853796797661 0.86423918560228 NA NA prediction 0.490770777609239 Functional Gain - FMO2 ENSG00000094963 CDS Human protein_coding chr1:171173138 chr1:171173137 nonsynonymous SNV 0.080 0 20 hm7G_associated_SNPs_21769 0 0 0 0 1 FMO2 chr1:171173203 5'GT 171173203 Upstream 67bp 20198 chr5 156671449 156671449 1 + G T LUSC 156671450 + 156671430 156671470 41 TGGATGTGTGTGAGGGCATGGCCTACCTGGAAGAGGCATGT TGGATGTGTGTGAGGGCATTGCCTACCTGGAAGAGGCATGT < 41bp 0.63237936387157 0.877750156867547 NA NA prediction 0.490741585991954 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156671450 chr5:156671449 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21771 0 0 0 0 1 ITK chr5:156671488 5'GT 156671488 Upstream 40bp 20199 chr16 57284341 57284341 1 + G T rs151111778 57284342 + 57284322 57284362 41 GGCACCATAAGGATGAAGTGGCTGGTGACATATTCGACATG GGCACCATAAGGATGAAGTTGCTGGTGACATATTCGACATG < 41bp 0.635865840444412 0.881214188532036 NA NA prediction 0.490696696175249 Functional Gain - ARL2BP ENSG00000102931 CDS Human protein_coding chr16:57284342 chr16:57284341 synonymous SNV . 0 20 hm7G_associated_SNPs_21774 0 0 1 0 2 ARL2BP chr16:57284323 3'AG 57284323 Downstream 19bp 20200 chr16 57284341 57284341 1 + G T rs151111778 57284342 + 57284322 57284362 41 GGCACCATAAGGATGAAGTGGCTGGTGACATATTCGACATG GGCACCATAAGGATGAAGTTGCTGGTGACATATTCGACATG < 41bp 0.635865840444412 0.881214188532036 NA NA prediction 0.490696696175249 Functional Gain - ARL2BP ENSG00000102931 CDS Human protein_coding chr16:57284342 chr16:57284341 synonymous SNV . 0 20 hm7G_associated_SNPs_21774 0 0 1 0 2 ARL2BP chr16:57284419 5'GT 57284419 Upstream 79bp 20201 chrX 128873207 128873207 1 + G T LUAD 128873208 + 128873188 128873228 41 CTATGGCCCGGGCTCACTGGGGCTGCTGCCCCTGGCTGGTC CTATGGCCCGGGCTCACTGTGGCTGCTGCCCCTGGCTGGTC < 41bp 0.403703312325379 0.745326704320003 NA NA prediction 0.490653408640006 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128873208 chrX:128873207 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_21775 0 0 0 0 1 XPNPEP2 chrX:128873238 5'GT 128873238 Upstream 32bp 20202 chr10 26939559 26939559 1 + G T UCEC 26939560 + 26939540 26939580 41 TCAGTGCTGTTCTCGAAGAGGCCCAGGCACATGCTGAAACA TCAGTGCTGTTCTCGAAGATGCCCAGGCACATGCTGAAACA < 41bp 0.432376353374758 0.745326274779302 NA NA prediction 0.490652549558605 Functional Gain - FAM238B ENSG00000231976 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:26939560 chr10:26939559 . . 0 20 hm7G_associated_SNPs_21776 0 0 0 0 1 FAM238B chr10:26939483 3'AG 26939483 Downstream 77bp 20203 chr1 227075801 227075801 1 + G T LUAD 227075802 + 227075782 227075822 41 TGTTGTCTAGTTCATCCATGGCTGGTTGATCATGTCTTCAC TGTTGTCTAGTTCATCCATTGCTGGTTGATCATGTCTTCAC < 41bp 0.405138131105846 0.745324240338969 NA NA prediction 0.490648480677939 Functional Gain - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227075802 chr1:227075801 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_21777 0 0 0 3 2 PSEN2 chr1:227075792 3'AG 227075792 Downstream 10bp 20204 chr1 227075801 227075801 1 + G T LUAD 227075802 + 227075782 227075822 41 TGTTGTCTAGTTCATCCATGGCTGGTTGATCATGTCTTCAC TGTTGTCTAGTTCATCCATTGCTGGTTGATCATGTCTTCAC < 41bp 0.405138131105846 0.745324240338969 NA NA prediction 0.490648480677939 Functional Gain - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227075802 chr1:227075801 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_21777 0 0 0 3 2 PSEN2 chr1:227075859 5'GT 227075859 Upstream 59bp 20205 chr2 219614825 219614825 1 + G T STAD 219614826 + 219614806 219614846 41 TTGTCCTGCCCAATGCAGAGGATATCATTTCCAGCCCCAGC TTGTCCTGCCCAATGCAGATGATATCATTTCCAGCCCCAGC < 41bp 0.402227060314895 0.745324022373247 NA NA prediction 0.490648044746494 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219614826 chr2:219614825 nonsynonymous SNV 0.934 0 20 hm7G_associated_SNPs_21778 0 0 1 0 2 TTLL4 chr2:219614732 3'AG 219614732 Downstream 94bp 20206 chr2 219614825 219614825 1 + G T STAD 219614826 + 219614806 219614846 41 TTGTCCTGCCCAATGCAGAGGATATCATTTCCAGCCCCAGC TTGTCCTGCCCAATGCAGATGATATCATTTCCAGCCCCAGC < 41bp 0.402227060314895 0.745324022373247 NA NA prediction 0.490648044746494 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219614826 chr2:219614825 nonsynonymous SNV 0.934 0 20 hm7G_associated_SNPs_21778 0 0 1 0 2 TTLL4 chr2:219614869 5'GT 219614869 Upstream 45bp 20207 chr11 1098731 1098731 1 + G T LIHC 1098732 + 1098712 1098752 41 TCATGCCGGGCTCGAGCCTGGAGTGCGCCAGTCTGCAGGCC TCATGCCGGGCTCGAGCCTTGAGTGCGCCAGTCTGCAGGCC < 41bp 0.403530999556271 0.745323157730097 NA NA prediction 0.490646315460193 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1098732 chr11:1098731 synonymous SNV . 0 20 hm7G_associated_SNPs_21779 0 0 0 0 2 MUC2 chr11:1098641 3'AG 1098641 Downstream 91bp 20208 chr11 1098731 1098731 1 + G T LIHC 1098732 + 1098712 1098752 41 TCATGCCGGGCTCGAGCCTGGAGTGCGCCAGTCTGCAGGCC TCATGCCGGGCTCGAGCCTTGAGTGCGCCAGTCTGCAGGCC < 41bp 0.403530999556271 0.745323157730097 NA NA prediction 0.490646315460193 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1098732 chr11:1098731 synonymous SNV . 0 20 hm7G_associated_SNPs_21779 0 0 0 0 2 MUC2 chr11:1098819 5'GT 1098819 Upstream 89bp 20209 chr21 43706025 43706025 1 + G T LUAD 43706026 + 43706006 43706046 41 AAGGACAATGTGTGTACCGGGGAAAAGTCTGCAATCTTGTG AAGGACAATGTGTGTACCGTGGAAAAGTCTGCAATCTTGTG < 41bp 0.402178325543323 0.745282870038959 NA NA prediction 0.490565740077919 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43706026 chr21:43706025 synonymous SNV . 0 20 hm7G_associated_SNPs_21782 0 0 0 0 1 ABCG1 chr21:43706104 5'GT 43706104 Upstream 80bp 20210 chr3 47374693 47374693 1 + G T UCEC 47374694 + 47374674 47374714 41 AGATACGACCGGGAGCAGAGGGGTCCCTACCTGCCTGAGCT AGATACGACCGGGAGCAGATGGGTCCCTACCTGCCTGAGCT < 41bp 0.395522795331548 0.745272486057949 NA NA prediction 0.490544972115897 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374694 chr3:47374693 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21783 0 0 1 0 1 KLHL18 chr3:47374647 3'AG 47374647 Downstream 47bp 20211 chr7 36338682 36338682 1 + G T LUAD 36338683 + 36338663 36338703 41 GATAACTGGTCTTGGGGCGGGGTGGCTTCTGAACACTGCCC GATAACTGGTCTTGGGGCGTGGTGGCTTCTGAACACTGCCC < 41bp 0.420936452288021 0.745247425762264 NA NA prediction 0.490494851524528 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36338683 chr7:36338682 nonsynonymous SNV 0.923 5 20 hm7G_associated_SNPs_21784 0 0 0 0 1 EEPD1 chr7:36338616 3'AG 36338616 Downstream 67bp 20212 chr10 96306165 96306165 1 + G T LUAD 96306166 + 96306146 96306186 41 CAGCAATGGTTGAACAACTGGACACTGCTGTGATTACCCCG CAGCAATGGTTGAACAACTTGACACTGCTGTGATTACCCCG < 41bp 0.41119686479457 0.745230571244339 NA NA prediction 0.490461142488678 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96306166 chr10:96306165 synonymous SNV . 0 20 hm7G_associated_SNPs_21785 0 0 1 2 2 HELLS chr10:96306134 3'AG 96306134 Downstream 32bp 20213 chr10 96306165 96306165 1 + G T LUAD 96306166 + 96306146 96306186 41 CAGCAATGGTTGAACAACTGGACACTGCTGTGATTACCCCG CAGCAATGGTTGAACAACTTGACACTGCTGTGATTACCCCG < 41bp 0.41119686479457 0.745230571244339 NA NA prediction 0.490461142488678 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96306166 chr10:96306165 synonymous SNV . 0 20 hm7G_associated_SNPs_21785 0 0 1 2 2 HELLS chr10:96306255 5'GT 96306255 Upstream 91bp 20214 chr6 160480035 160480035 1 + G T LUAD 160480036 + 160480016 160480056 41 ACTGAAGAGCTCAAGAATTGGAAGCCAGCAAGGCCAGTCGG ACTGAAGAGCTCAAGAATTTGAAGCCAGCAAGGCCAGTCGG < 41bp 0.406706096245426 0.745221020486743 NA NA prediction 0.490442040973487 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160480036 chr6:160480035 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_21787 0 0 1 0 2 IGF2R chr6:160479938 3'AG 160479938 Downstream 98bp 20215 chr6 160480035 160480035 1 + G T LUAD 160480036 + 160480016 160480056 41 ACTGAAGAGCTCAAGAATTGGAAGCCAGCAAGGCCAGTCGG ACTGAAGAGCTCAAGAATTTGAAGCCAGCAAGGCCAGTCGG < 41bp 0.406706096245426 0.745221020486743 NA NA prediction 0.490442040973487 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160480036 chr6:160480035 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_21787 0 0 1 0 2 IGF2R chr6:160480130 5'GT 160480130 Upstream 96bp 20216 chr6 44119729 44119729 1 + G T LUAD 44119730 + 44119710 44119750 41 GCGCGCTCGGCCGCCGAGAGGCGCAACGTGAAGCGGGTACG GCGCGCTCGGCCGCCGAGATGCGCAACGTGAAGCGGGTACG < 41bp 0.641602654669308 0.886819814687458 NA NA prediction 0.4904343200363 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44119730 chr6:44119729 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_21788 0 0 0 0 1 TMEM63B chr6:44119745 5'GT 44119745 Upstream 17bp 20217 chr12 57994217 57994217 1 + G T SARC 57994218 + 57994198 57994238 41 AGAAGCTGAAGAGAGATGTGGAGGTGATGATTGGGTGCTCT AGAAGCTGAAGAGAGATGTTGAGGTGATGATTGGGTGCTCT < 41bp 0.627456253244517 0.872672944714778 NA NA prediction 0.490433382940523 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57994218 chr12:57994217 synonymous SNV . 0 20 hm7G_associated_SNPs_21789 0 0 0 0 1 PIP4K2C chr12:57994220 5'GT 57994220 Upstream 4bp 20218 chr17 40845476 40845476 1 + G T UCEC 40845477 + 40845457 40845497 41 GCTCCCCTGTTTCCATGGAGGCCGCTGCGTGGAGCGCTATA GCTCCCCTGTTTCCATGGATGCCGCTGCGTGGAGCGCTATA < 41bp 0.64164167174023 0.886856810366415 NA NA prediction 0.490430277252371 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40845477 chr17:40845476 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21790 0 0 1 0 1 CNTNAP1 chr17:40845554 5'GT 40845554 Upstream 79bp 20219 chr14 45583431 45583431 1 + G T UCEC 45583432 + 45583412 45583452 41 AAACACTCCTGAAAGAACAGGATTCTTTAAAAAGGAAAGCA AAACACTCCTGAAAGAACATGATTCTTTAAAAAGGAAAGCA < 41bp 0.615901613139851 0.861115516963018 NA NA prediction 0.490427807646335 Functional Gain - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45583432 chr14:45583431 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21791 0 0 1 0 2 PRPF39 chr14:45583386 3'AG 45583386 Downstream 46bp 20220 chr14 45583431 45583431 1 + G T UCEC 45583432 + 45583412 45583452 41 AAACACTCCTGAAAGAACAGGATTCTTTAAAAAGGAAAGCA AAACACTCCTGAAAGAACATGATTCTTTAAAAAGGAAAGCA < 41bp 0.615901613139851 0.861115516963018 NA NA prediction 0.490427807646335 Functional Gain - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45583432 chr14:45583431 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21791 0 0 1 0 2 PRPF39 chr14:45583460 5'GT 45583460 Upstream 30bp 20221 chr6 54254606 54254606 1 + G T LUAD 54254607 + 54254587 54254627 41 AGATTGCTGCCAATTCCTGGGGAAAGTCATGGGGAGAGAAT AGATTGCTGCCAATTCCTGTGGAAAGTCATGGGGAGAGAAT < 41bp 0.608603508802959 0.853806842840334 NA NA prediction 0.49040666807475 Functional Gain - TINAG ENSG00000137251 CDS Human protein_coding chr6:54254607 chr6:54254606 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21793 0 0 0 0 1 TINAG chr6:54254589 3'AG 54254589 Downstream 18bp 20222 chr11 249047 249047 1 + G T LUAD 249048 + 249028 249068 41 CAGACTCTGAAGACTGCCTGGGGCCAGCAGGTAGGACTCCC CAGACTCTGAAGACTGCCTTGGGCCAGCAGGTAGGACTCCC < 41bp 0.644400996095402 0.889603280272161 NA NA prediction 0.490404568353518 Functional Gain - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:249048 chr11:249047 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_21794 0 0 1 0 1 PSMD13 chr11:249057 5'GT 249057 Upstream 11bp 20223 chr16 3706103 3706103 1 + G T COAD 3706104 + 3706084 3706124 41 TTTTGTTTCTTCAATCCAGGGATGCACCAGACACCTATCAC TTTTGTTTCTTCAATCCAGTGATGCACCAGACACCTATCAC < 41bp 0.411114253707943 0.745193672872695 NA NA prediction 0.49038734574539 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706104 chr16:3706103 stopgain 0.189 0 20 hm7G_associated_SNPs_21795 0 0 0 0 2 DNASE1 chr16:3706103 3'AG 3706103 Downstream 1bp 20224 chr16 3706103 3706103 1 + G T COAD 3706104 + 3706084 3706124 41 TTTTGTTTCTTCAATCCAGGGATGCACCAGACACCTATCAC TTTTGTTTCTTCAATCCAGTGATGCACCAGACACCTATCAC < 41bp 0.411114253707943 0.745193672872695 NA NA prediction 0.49038734574539 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706104 chr16:3706103 stopgain 0.189 0 20 hm7G_associated_SNPs_21795 0 0 0 0 2 DNASE1 chr16:3706186 5'GT 3706186 Upstream 84bp 20225 chr8 24254922 24254922 1 + G T THCA 24254923 + 24254903 24254943 41 TGGTGTGAAGAGCACTGACGGGAAACAAGGCCCAATTCGAA TGGTGTGAAGAGCACTGACTGGAAACAAGGCCCAATTCGAA < 41bp 0.625957160120959 0.871128665340167 NA NA prediction 0.490343010438415 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24254923 chr8:24254922 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_21797 0 0 0 0 1 ADAMDEC1 chr8:24254969 5'GT 24254969 Upstream 48bp 20226 chr11 121036007 121036007 1 + G T UCEC 121036008 + 121035988 121036028 41 TGGTTGAAGATCCCTGTGTGGGGGCGGACTGTCCCAACCGA TGGTTGAAGATCCCTGTGTTGGGGCGGACTGTCCCAACCGA < 41bp 0.404550377863719 0.745170038873982 NA NA prediction 0.490340077747965 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121036008 chr11:121036007 synonymous SNV . 0 20 hm7G_associated_SNPs_21798 0 0 0 0 2 TECTA chr11:121035982 3'AG 121035982 Downstream 26bp 20227 chr11 121036007 121036007 1 + G T UCEC 121036008 + 121035988 121036028 41 TGGTTGAAGATCCCTGTGTGGGGGCGGACTGTCCCAACCGA TGGTTGAAGATCCCTGTGTTGGGGCGGACTGTCCCAACCGA < 41bp 0.404550377863719 0.745170038873982 NA NA prediction 0.490340077747965 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121036008 chr11:121036007 synonymous SNV . 0 20 hm7G_associated_SNPs_21798 0 0 0 0 2 TECTA chr11:121036092 5'GT 121036092 Upstream 86bp 20228 chr8 121326215 121326215 1 + G T UCEC 121326216 + 121326196 121326236 41 TTGGTCTGCCAGGACCTCAGGGTCCACCTGGACCTCAAGGA TTGGTCTGCCAGGACCTCATGGTCCACCTGGACCTCAAGGA < 41bp 0.402987103496598 0.745167786969158 NA NA prediction 0.490335573938316 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121326216 chr8:121326215 nonsynonymous SNV 0.973 5 20 hm7G_associated_SNPs_21799 0 0 0 0 2 COL14A1 chr8:121326171 3'AG 121326171 Downstream 45bp 20229 chr8 121326215 121326215 1 + G T UCEC 121326216 + 121326196 121326236 41 TTGGTCTGCCAGGACCTCAGGGTCCACCTGGACCTCAAGGA TTGGTCTGCCAGGACCTCATGGTCCACCTGGACCTCAAGGA < 41bp 0.402987103496598 0.745167786969158 NA NA prediction 0.490335573938316 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121326216 chr8:121326215 nonsynonymous SNV 0.973 5 20 hm7G_associated_SNPs_21799 0 0 0 0 2 COL14A1 chr8:121326266 5'GT 121326266 Upstream 52bp 20230 chr7 99802270 99802270 1 + G T UCEC 99802271 + 99802251 99802291 41 TGTACACAGAACTGCTGCAGGAGCATGGGCCCCAGGGCCTG TGTACACAGAACTGCTGCATGAGCATGGGCCCCAGGGCCTG < 41bp 0.638379423131033 0.883547209736718 NA NA prediction 0.49033557321137 Functional Gain - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99802271 chr7:99802270 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_21800 0 0 0 0 1 STAG3 chr7:99802250 3'AG 99802250 Downstream 21bp 20231 chr9 2115874 2115874 1 + G T LIHC 2115875 + 2115855 2115895 41 GGGCAGCAGAACGAGGTCCGGGTACTGAGGCTCTGTACCGT GGGCAGCAGAACGAGGTCCTGGTACTGAGGCTCTGTACCGT < 41bp 0.406907592126802 0.745167129026653 NA NA prediction 0.490334258053307 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2115875 chr9:2115874 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21801 0 0 1 0 1 SMARCA2 chr9:2115822 3'AG 2115822 Downstream 53bp 20232 chr4 129100622 129100622 1 + G T LIHC 129100623 + 129100603 129100643 41 CTAGAGTGTCATGTTGGTTGGGTAATGGATTCCAGAGACCG CTAGAGTGTCATGTTGGTTTGGTAATGGATTCCAGAGACCG < 41bp 0.61718585320027 0.862349573560231 NA NA prediction 0.490327440719922 Functional Gain - LARP1B ENSG00000138709 CDS Human protein_coding chr4:129100623 chr4:129100622 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_21802 0 0 0 0 2 LARP1B chr4:129100561 3'AG 129100561 Downstream 62bp 20233 chr4 129100622 129100622 1 + G T LIHC 129100623 + 129100603 129100643 41 CTAGAGTGTCATGTTGGTTGGGTAATGGATTCCAGAGACCG CTAGAGTGTCATGTTGGTTTGGTAATGGATTCCAGAGACCG < 41bp 0.61718585320027 0.862349573560231 NA NA prediction 0.490327440719922 Functional Gain - LARP1B ENSG00000138709 CDS Human protein_coding chr4:129100623 chr4:129100622 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_21802 0 0 0 0 2 LARP1B chr4:129100667 5'GT 129100667 Upstream 46bp 20234 chrX 147030228 147030228 1 + G T UCS 147030229 + 147030209 147030249 41 GTTGACTGCAATAATGAAAGGAGTGTCCACACTAAAACATT GTTGACTGCAATAATGAAATGAGTGTCCACACTAAAACATT < 41bp 0.462901565576217 0.745142645680269 NA NA prediction 0.490285291360539 Functional Gain - FMR1 ENSG00000102081 CDS Human protein_coding chrX:147030229 chrX:147030228 stopgain 1.000 3 20 hm7G_associated_SNPs_21807 0 0 1 0 1 FMR1 chrX:147030203 3'AG 147030203 Downstream 26bp 20235 chr17 4351540 4351540 1 + G T ACC 4351541 + 4351521 4351561 41 TGCCGAGACACAGGGGGAGGGGGCCGTGGGAGGCTTCAGGA TGCCGAGACACAGGGGGAGTGGGCCGTGGGAGGCTTCAGGA < 41bp 0.644276400156921 0.889407084020288 NA NA prediction 0.490261367726733 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4351541 chr17:4351540 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_21809 0 0 0 0 2 SPNS3 chr17:4351450 3'AG 4351450 Downstream 91bp 20236 chr17 4351540 4351540 1 + G T ACC 4351541 + 4351521 4351561 41 TGCCGAGACACAGGGGGAGGGGGCCGTGGGAGGCTTCAGGA TGCCGAGACACAGGGGGAGTGGGCCGTGGGAGGCTTCAGGA < 41bp 0.644276400156921 0.889407084020288 NA NA prediction 0.490261367726733 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4351541 chr17:4351540 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_21809 0 0 0 0 2 SPNS3 chr17:4351598 5'GT 4351598 Upstream 59bp 20237 chr2 3729250 3729250 1 + G T OV 3729251 + 3729231 3729271 41 ACCAGAAATCCCAGAAAGAGGAACCAGGACAGGAGCTGCAG ACCAGAAATCCCAGAAAGATGAACCAGGACAGGAGCTGCAG < 41bp 0.617228931948777 0.862345014329607 NA NA prediction 0.490232164761659 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3729251 chr2:3729250 stopgain 0.008 1 20 hm7G_associated_SNPs_21810 0 0 0 0 2 ALLC chr2:3729224 3'AG 3729224 Downstream 27bp 20238 chr2 3729250 3729250 1 + G T OV 3729251 + 3729231 3729271 41 ACCAGAAATCCCAGAAAGAGGAACCAGGACAGGAGCTGCAG ACCAGAAATCCCAGAAAGATGAACCAGGACAGGAGCTGCAG < 41bp 0.617228931948777 0.862345014329607 NA NA prediction 0.490232164761659 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3729251 chr2:3729250 stopgain 0.008 1 20 hm7G_associated_SNPs_21810 0 0 0 0 2 ALLC chr2:3729303 5'GT 3729303 Upstream 54bp 20239 chr12 112191598 112191598 1 + G T STAD 112191599 + 112191579 112191619 41 AAGTCCCGCTTGGCTTTTGGGAAGCCCCTGGTGGAGCAGGG AAGTCCCGCTTGGCTTTTGTGAAGCCCCTGGTGGAGCAGGG < 41bp 0.406713937005574 0.7451040007781 NA NA prediction 0.490208001556199 Functional Gain - ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112191599 chr12:112191598 nonsynonymous SNV 0.858 4 20 hm7G_associated_SNPs_21813 0 0 1 0 1 ACAD10 chr12:112191576 3'AG 112191576 Downstream 23bp 20240 chr6 130374106 130374106 1 + G T UCEC 130374107 + 130374087 130374127 41 CTCTGAAAGCTGACACCAAGGAGGATGGAGAAGAGAGAGAT CTCTGAAAGCTGACACCAATGAGGATGGAGAAGAGAGAGAT < 41bp 0.631540529296355 0.876631480609465 NA NA prediction 0.49018190262622 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130374107 chr6:130374106 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_21816 0 0 1 0 1 L3MBTL3 chr6:130374136 5'GT 130374136 Upstream 31bp 20241 chr9 131223324 131223324 1 + G T LUAD 131223325 + 131223305 131223345 41 CCTGGAAAATCATCTGCCCGGCCTGTGGGATGCAAGTGGGA CCTGGAAAATCATCTGCCCTGCCTGTGGGATGCAAGTGGGA < 41bp 0.427086896291511 0.7450901851428 NA NA prediction 0.490180370285599 Functional Gain - ODF2 ENSG00000136811 CDS Human protein_coding chr9:131223325 chr9:131223324 nonsynonymous SNV 0.972 1 20 hm7G_associated_SNPs_21817 0 0 1 0 1 ODF2 chr9:131223346 5'GT 131223346 Upstream 23bp 20242 chr1 158226772 158226772 1 + G T UCEC 158226773 + 158226753 158226793 41 ATCTCCGCGCAACCCTGGAGGTGGCCGCTGGGGAGGCAGCT ATCTCCGCGCAACCCTGGATGTGGCCGCTGGGGAGGCAGCT < 41bp 0.627673738133088 0.872754407644771 NA NA prediction 0.490161339023366 Functional Gain - CD1A ENSG00000158477 CDS Human protein_coding chr1:158226773 chr1:158226772 nonsynonymous SNV 0.034 0 20 hm7G_associated_SNPs_21818 0 0 0 0 1 CD1A chr1:158226854 5'GT 158226854 Upstream 83bp 20243 chr19 17885228 17885228 1 + G T UCEC 17885229 + 17885209 17885249 41 AACGTTTGCGGGGAGCCAAGGCCTTTCGCCTTCCAGGACTA AACGTTTGCGGGGAGCCAATGCCTTTCGCCTTCCAGGACTA < 41bp 0.390906114869835 0.745064300201308 NA NA prediction 0.490128600402616 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885229 chr19:17885228 nonsynonymous SNV 0.977 1 20 hm7G_associated_SNPs_21820 0 0 1 0 2 FCHO1 chr19:17885203 3'AG 17885203 Downstream 26bp 20244 chr19 17885228 17885228 1 + G T UCEC 17885229 + 17885209 17885249 41 AACGTTTGCGGGGAGCCAAGGCCTTTCGCCTTCCAGGACTA AACGTTTGCGGGGAGCCAATGCCTTTCGCCTTCCAGGACTA < 41bp 0.390906114869835 0.745064300201308 NA NA prediction 0.490128600402616 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885229 chr19:17885228 nonsynonymous SNV 0.977 1 20 hm7G_associated_SNPs_21820 0 0 1 0 2 FCHO1 chr19:17885287 5'GT 17885287 Upstream 60bp 20245 chr7 117149094 117149094 1 + G T LUAD 117149095 + 117149075 117149115 41 TATTCTTTTGCAGAGAATGGGATAGAGAGCTGGCTTCAAAG TATTCTTTTGCAGAGAATGTGATAGAGAGCTGGCTTCAAAG < 41bp 0.433792013633091 0.745039039179623 NA NA prediction 0.490078078359246 Functional Gain - CFTR ENSG00000001626 CDS Human protein_coding chr7:117149095 chr7:117149094 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21822 0 0 0 0 1 CFTR chr7:117149088 3'AG 117149088 Downstream 7bp 20246 chr1 65830386 65830386 1 + G T STAD 65830387 + 65830367 65830407 41 CATGGTAAAAGGAGGTGCAGGGAGGCTCTTTAGTAACCTAA CATGGTAAAAGGAGGTGCATGGAGGCTCTTTAGTAACCTAA < 41bp 0.405031360618841 0.745037811066684 NA NA prediction 0.490075622133367 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65830387 chr1:65830386 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_21823 0 0 1 0 2 DNAJC6 chr1:65830318 3'AG 65830318 Downstream 69bp 20247 chr1 65830386 65830386 1 + G T STAD 65830387 + 65830367 65830407 41 CATGGTAAAAGGAGGTGCAGGGAGGCTCTTTAGTAACCTAA CATGGTAAAAGGAGGTGCATGGAGGCTCTTTAGTAACCTAA < 41bp 0.405031360618841 0.745037811066684 NA NA prediction 0.490075622133367 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65830387 chr1:65830386 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_21823 0 0 1 0 2 DNAJC6 chr1:65830468 5'GT 65830468 Upstream 83bp 20248 chr1 92511127 92511127 1 + G T LUAD 92511128 + 92511108 92511148 41 TATTGGCCATGACTGGGGGGGCATGATTGCTTGGCTAATTG TATTGGCCATGACTGGGGGTGCATGATTGCTTGGCTAATTG < 41bp 0.629729058815424 0.874761551781089 NA NA prediction 0.490064985931329 Functional Gain - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92511128 chr1:92511127 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_21824 0 0 0 0 1 EPHX4 chr1:92511217 5'GT 92511217 Upstream 91bp 20249 chr1 206566207 206566207 1 + G T UCEC 206566208 + 206566188 206566228 41 CGGCCAACGTTCGCATTGAGGAGAAACATGTCCGGAGGAGC CGGCCAACGTTCGCATTGATGAGAAACATGTCCGGAGGAGC < 41bp 0.403017337446045 0.745023023719187 NA NA prediction 0.490046047438375 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206566208 chr1:206566207 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_21825 0 0 1 0 1 SRGAP2 chr1:206566261 5'GT 206566261 Upstream 55bp 20250 chr17 7483266 7483266 1 + G T UCEC 7483267 + 7483247 7483287 41 CACAAAACCACCACTCACAGGACAACCACCACAGGCACCAC CACAAAACCACCACTCACATGACAACCACCACAGGCACCAC < 41bp 0.403792178795353 0.744999530444271 NA NA prediction 0.489999060888543 Functional Gain - CD68 ENSG00000129226 CDS Human protein_coding chr17:7483267 chr17:7483266 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_21828 0 0 1 0 1 CD68 chr17:7483209 3'AG 7483209 Downstream 58bp 20251 chr3 142511727 142511727 1 + G T LUSC 142511728 + 142511708 142511748 41 CCTACACTGGTGGCAGAAGGGCTTTTTGCATTTGCAAATGT CCTACACTGGTGGCAGAAGTGCTTTTTGCATTTGCAAATGT < 41bp 0.422134072141617 0.744971374929615 NA NA prediction 0.489942749859231 Functional Gain - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142511728 chr3:142511727 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21832 0 0 0 0 2 TRPC1 chr3:142511666 3'AG 142511666 Downstream 62bp 20252 chr3 142511727 142511727 1 + G T LUSC 142511728 + 142511708 142511748 41 CCTACACTGGTGGCAGAAGGGCTTTTTGCATTTGCAAATGT CCTACACTGGTGGCAGAAGTGCTTTTTGCATTTGCAAATGT < 41bp 0.422134072141617 0.744971374929615 NA NA prediction 0.489942749859231 Functional Gain - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142511728 chr3:142511727 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21832 0 0 0 0 2 TRPC1 chr3:142511809 5'GT 142511809 Upstream 83bp 20253 chr9 2635519 2635519 1 + G T STAD 2635520 + 2635500 2635540 41 CGCTGTATTACGCTGTTGTGGAAATGTGATGGGGATGAAGA CGCTGTATTACGCTGTTGTTGAAATGTGATGGGGATGAAGA < 41bp 0.640926682435116 0.885880285930327 NA NA prediction 0.489907206990422 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2635520 chr9:2635519 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_21834 0 0 0 2 2 VLDLR chr9:2635453 3'AG 2635453 Downstream 67bp 20254 chr9 2635519 2635519 1 + G T STAD 2635520 + 2635500 2635540 41 CGCTGTATTACGCTGTTGTGGAAATGTGATGGGGATGAAGA CGCTGTATTACGCTGTTGTTGAAATGTGATGGGGATGAAGA < 41bp 0.640926682435116 0.885880285930327 NA NA prediction 0.489907206990422 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2635520 chr9:2635519 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_21834 0 0 0 2 2 VLDLR chr9:2635572 5'GT 2635572 Upstream 54bp 20255 chr12 125626689 125626689 1 + G T LUAD 125626690 + 125626670 125626710 41 CGTCAAACAGATCATCGCTGGAAAAGCCGTGGAGCAAGGAG CGTCAAACAGATCATCGCTTGAAAAGCCGTGGAGCAAGGAG < 41bp 0.626635302841671 0.871581129551864 NA NA prediction 0.489891653420386 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125626690 chr12:125626689 stopgain 0.019 1 20 hm7G_associated_SNPs_21835 0 0 1 0 1 AACS chr12:125626638 3'AG 125626638 Downstream 52bp 20256 chr5 52942222 52942222 1 + G T UCEC 52942223 + 52942203 52942243 41 ATGGGAAAATCCTTTGATGGGTTGGGCATCAACGTGAGTAC ATGGGAAAATCCTTTGATGTGTTGGGCATCAACGTGAGTAC < 41bp 0.58227724287241 0.827218308569187 NA NA prediction 0.489882131393555 Functional Gain - NDUFS4 ENSG00000164258 CDS Human protein_coding chr5:52942223 chr5:52942222 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21837 0 0 1 0 1 NDUFS4 chr5:52942235 5'GT 52942235 Upstream 14bp 20257 chr1 17257065 17257065 1 + G T LUAD 17257066 + 17257046 17257086 41 AGGAGCTGGAGCACCGGGAGGCGGCGTGGAGGCGCGAGGAG AGGAGCTGGAGCACCGGGATGCGGCGTGGAGGCGCGAGGAG < 41bp 0.403385953748019 0.744930670157975 NA NA prediction 0.48986134031595 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17257066 chr1:17257065 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_21839 0 0 0 0 1 CROCC chr1:17257089 5'GT 17257089 Upstream 25bp 20258 chr1 78332046 78332046 1 + G T LUAD 78332047 + 78332027 78332067 41 TGGCTTCAAGTTGTTGGTCGGTGCTGAAACAGAAAAGACAA TGGCTTCAAGTTGTTGGTCTGTGCTGAAACAGAAAAGACAA < 41bp 0.439740383602878 0.744915879444236 NA NA prediction 0.489831758888472 Functional Gain - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78332047 chr1:78332046 synonymous SNV . 0 20 hm7G_associated_SNPs_21842 0 0 1 0 2 MIGA1 chr1:78332023 3'AG 78332023 Downstream 24bp 20259 chr1 78332046 78332046 1 + G T LUAD 78332047 + 78332027 78332067 41 TGGCTTCAAGTTGTTGGTCGGTGCTGAAACAGAAAAGACAA TGGCTTCAAGTTGTTGGTCTGTGCTGAAACAGAAAAGACAA < 41bp 0.439740383602878 0.744915879444236 NA NA prediction 0.489831758888472 Functional Gain - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78332047 chr1:78332046 synonymous SNV . 0 20 hm7G_associated_SNPs_21842 0 0 1 0 2 MIGA1 chr1:78332076 5'GT 78332076 Upstream 31bp 20260 chr2 29222282 29222282 1 + G T UCEC 29222283 + 29222263 29222303 41 GGGACACCATCCAGATTAAGGACAAGCTCAAGAAAAGGAGG GGGACACCATCCAGATTAATGACAAGCTCAAGAAAAGGAGG < 41bp 0.394998773578619 0.744899399150151 NA NA prediction 0.489798798300303 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29222283 chr2:29222282 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21843 0 0 0 0 1 TOGARAM2 chr2:29222334 5'GT 29222334 Upstream 53bp 20261 chr2 96936884 96936884 1 + G T HNSC 96936885 + 96936865 96936905 41 GCTCTGGCCACAGCTTGTGGGGATGACGCGATCCGCGTGTT GCTCTGGCCACAGCTTGTGTGGATGACGCGATCCGCGTGTT < 41bp 0.622235070945089 0.867121616427773 NA NA prediction 0.489773090965369 Functional Gain - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96936885 chr2:96936884 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_21845 0 0 1 0 1 CIAO1 chr2:96936849 3'AG 96936849 Downstream 36bp 20262 chr12 56385939 56385939 1 + G T LUAD 56385940 + 56385920 56385960 41 GTGCAGCAGGCCGAAGCCGGGGTGTGGATCTCCATGAACAG GTGCAGCAGGCCGAAGCCGTGGTGTGGATCTCCATGAACAG < 41bp 0.624927545793352 0.869797491365635 NA NA prediction 0.489739891144567 Functional Gain - RAB5B ENSG00000111540 CDS Human protein_coding chr12:56385940 chr12:56385939 synonymous SNV . 0 20 hm7G_associated_SNPs_21847 0 0 1 0 1 RAB5B chr12:56385881 3'AG 56385881 Downstream 59bp 20263 chr20 37536803 37536803 1 + G T UCEC 37536804 + 37536784 37536824 41 CCTACAACGGGGACATCAGGGAGACCAGGACAGACCAAGAG CCTACAACGGGGACATCAGTGAGACCAGGACAGACCAAGAG < 41bp 0.402894823556781 0.744866361153096 NA NA prediction 0.489732722306191 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37536804 chr20:37536803 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_21848 0 0 0 0 1 PPP1R16B chr20:37536836 5'GT 37536836 Upstream 34bp 20264 chrX 44941964 44941964 1 + G T LIHC 44941965 + 44941945 44941985 41 TGTCTCTTTTTTAAGTTCTGGGAGGAGGAGGAAAGGACCCT TGTCTCTTTTTTAAGTTCTTGGAGGAGGAGGAAAGGACCCT < 41bp 0.612711400185301 0.857535243322932 NA NA prediction 0.489647686275263 Functional Gain - KDM6A ENSG00000147050 CDS Human protein_coding chrX:44941965 chrX:44941964 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21851 0 0 1 0 2 KDM6A chrX:44941960 3'AG 44941960 Downstream 5bp 20265 chrX 44941964 44941964 1 + G T LIHC 44941965 + 44941945 44941985 41 TGTCTCTTTTTTAAGTTCTGGGAGGAGGAGGAAAGGACCCT TGTCTCTTTTTTAAGTTCTTGGAGGAGGAGGAAAGGACCCT < 41bp 0.612711400185301 0.857535243322932 NA NA prediction 0.489647686275263 Functional Gain - KDM6A ENSG00000147050 CDS Human protein_coding chrX:44941965 chrX:44941964 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21851 0 0 1 0 2 KDM6A chrX:44942034 5'GT 44942034 Upstream 71bp 20266 chr14 23235939 23235939 1 + G T LUSC 23235940 + 23235920 23235960 41 GGACTAATGTGCGGACGCCGGGAGCTTCTGCGCTTGCTACA GGACTAATGTGCGGACGCCTGGAGCTTCTGCGCTTGCTACA < 41bp 0.416000306593573 0.744808234403677 NA NA prediction 0.489616468807354 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235940 chr14:23235939 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_21852 0 0 1 0 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 35bp 20267 chr17 72345451 72345451 1 + G T LUAD 72345452 + 72345432 72345472 41 CTGGGCGGGGCCAGGCCCGGGGCCGGCAGGATCGGGGTGAC CTGGGCGGGGCCAGGCCCGTGGCCGGCAGGATCGGGGTGAC < 41bp 0.386178393200927 0.744795805375528 NA NA prediction 0.489591610751057 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345452 chr17:72345451 synonymous SNV . 0 20 hm7G_associated_SNPs_21854 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 38bp 20268 chr5 115350152 115350152 1 + G T LUAD 115350153 + 115350133 115350173 41 CTTTTTGTAACTGCGTGTTGGTTGGGCCTTGAAGACTGCCT CTTTTTGTAACTGCGTGTTTGTTGGGCCTTGAAGACTGCCT < 41bp 0.432418739989282 0.744792515577739 NA NA prediction 0.489585031155479 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115350153 chr5:115350152 nonsynonymous SNV 0.963 0 20 hm7G_associated_SNPs_21855 0 0 0 0 2 LVRN chr5:115350117 3'AG 115350117 Downstream 36bp 20269 chr5 115350152 115350152 1 + G T LUAD 115350153 + 115350133 115350173 41 CTTTTTGTAACTGCGTGTTGGTTGGGCCTTGAAGACTGCCT CTTTTTGTAACTGCGTGTTTGTTGGGCCTTGAAGACTGCCT < 41bp 0.432418739989282 0.744792515577739 NA NA prediction 0.489585031155479 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115350153 chr5:115350152 nonsynonymous SNV 0.963 0 20 hm7G_associated_SNPs_21855 0 0 0 0 2 LVRN chr5:115350224 5'GT 115350224 Upstream 73bp 20270 chr19 7075712 7075712 1 + G T CESC 7075713 + 7075693 7075733 41 AGCGAGAAGGACACACAGAGGGCGGAGAGCTGGTTAATGAG AGCGAGAAGGACACACAGATGGCGGAGAGCTGGTTAATGAG < 41bp 0.408606636803489 0.744776476749975 NA NA prediction 0.48955295349995 Functional Gain - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7075713 chr19:7075712 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_21856 0 0 1 0 3 ZNF557 chr19:7075666 3'AG 7075666 Downstream 47bp 20271 chr19 7075712 7075712 1 + G T CESC 7075713 + 7075693 7075733 41 AGCGAGAAGGACACACAGAGGGCGGAGAGCTGGTTAATGAG AGCGAGAAGGACACACAGATGGCGGAGAGCTGGTTAATGAG < 41bp 0.408606636803489 0.744776476749975 NA NA prediction 0.48955295349995 Functional Gain - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7075713 chr19:7075712 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_21856 0 0 1 0 3 ZNF557 chr19:7075687 3'AG 7075687 Downstream 26bp 20272 chr19 7075712 7075712 1 + G T CESC 7075713 + 7075693 7075733 41 AGCGAGAAGGACACACAGAGGGCGGAGAGCTGGTTAATGAG AGCGAGAAGGACACACAGATGGCGGAGAGCTGGTTAATGAG < 41bp 0.408606636803489 0.744776476749975 NA NA prediction 0.48955295349995 Functional Gain - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7075713 chr19:7075712 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_21856 0 0 1 0 3 ZNF557 chr19:7075754 5'GT 7075754 Upstream 43bp 20273 chr10 90428460 90428460 1 + G T UCEC 90428461 + 90428441 90428481 41 ACAGCAGAGGAAACACCTGGGCCAGAAGAAACTTGTACTAT ACAGCAGAGGAAACACCTGTGCCAGAAGAAACTTGTACTAT < 41bp 0.628957995347505 0.873731686424784 NA NA prediction 0.489547382154557 Functional Gain - LIPF ENSG00000182333 CDS Human protein_coding chr10:90428461 chr10:90428460 nonsynonymous SNV 0.948 3 20 hm7G_associated_SNPs_21857 0 0 0 0 2 LIPF chr10:90428414 3'AG 90428414 Downstream 47bp 20274 chr10 90428460 90428460 1 + G T UCEC 90428461 + 90428441 90428481 41 ACAGCAGAGGAAACACCTGGGCCAGAAGAAACTTGTACTAT ACAGCAGAGGAAACACCTGTGCCAGAAGAAACTTGTACTAT < 41bp 0.628957995347505 0.873731686424784 NA NA prediction 0.489547382154557 Functional Gain - LIPF ENSG00000182333 CDS Human protein_coding chr10:90428461 chr10:90428460 nonsynonymous SNV 0.948 3 20 hm7G_associated_SNPs_21857 0 0 0 0 2 LIPF chr10:90428513 5'GT 90428513 Upstream 54bp 20275 chr20 62616316 62616316 1 + G T UCEC 62616317 + 62616297 62616337 41 CCTACGAGAAAGATGATGAGGAAGCAGATGCTATCTATGCA CCTACGAGAAAGATGATGATGAAGCAGATGCTATCTATGCA < 41bp 0.637560143637187 0.882306062917614 NA NA prediction 0.489491838560854 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62616317 chr20:62616316 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21859 0 0 1 0 2 PRPF6 chr20:62616260 3'AG 62616260 Downstream 57bp 20276 chr20 62616316 62616316 1 + G T UCEC 62616317 + 62616297 62616337 41 CCTACGAGAAAGATGATGAGGAAGCAGATGCTATCTATGCA CCTACGAGAAAGATGATGATGAAGCAGATGCTATCTATGCA < 41bp 0.637560143637187 0.882306062917614 NA NA prediction 0.489491838560854 Functional Gain - PRPF6 ENSG00000101161 CDS Human protein_coding chr20:62616317 chr20:62616316 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_21859 0 0 1 0 2 PRPF6 chr20:62616378 5'GT 62616378 Upstream 63bp 20277 chr18 63489400 63489400 1 + G T LUAD 63489401 + 63489381 63489421 41 TCAGGCAAAGGATATGGTTGGTCAAAATGGAGGACTGTCAG TCAGGCAAAGGATATGGTTTGTCAAAATGGAGGACTGTCAG < 41bp 0.621140733035508 0.865883564982793 NA NA prediction 0.489485663894569 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63489401 chr18:63489400 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21860 0 0 1 0 2 CDH7 chr18:63489317 3'AG 63489317 Downstream 84bp 20278 chr18 63489400 63489400 1 + G T LUAD 63489401 + 63489381 63489421 41 TCAGGCAAAGGATATGGTTGGTCAAAATGGAGGACTGTCAG TCAGGCAAAGGATATGGTTTGTCAAAATGGAGGACTGTCAG < 41bp 0.621140733035508 0.865883564982793 NA NA prediction 0.489485663894569 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63489401 chr18:63489400 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21860 0 0 1 0 2 CDH7 chr18:63489484 5'GT 63489484 Upstream 85bp 20279 chr7 150553564 150553564 1 + G T LUSC 150553565 + 150553545 150553585 41 CCGTGGAGCGAGAGATGCCGGCCCTGGGCTGGGCCGTGGCT CCGTGGAGCGAGAGATGCCTGCCCTGGGCTGGGCCGTGGCT < 41bp 0.413686933828826 0.744723056428297 NA NA prediction 0.489446112856594 Functional Gain - AOC1 ENSG00000002726 CDS Human protein_coding chr7:150553565 chr7:150553564 synonymous SNV . 0 20 hm7G_associated_SNPs_21862 0 0 0 0 1 AOC1 chr7:150553543 3'AG 150553543 Downstream 22bp 20280 chr12 9985931 9985931 1 + G T LUAD 9985932 + 9985912 9985952 41 ATTGCTAAAATGCCAAAAAGGAAGTTGTTCAAATGCCACTC ATTGCTAAAATGCCAAAAATGAAGTTGTTCAAATGCCACTC < 41bp 0.436154795036821 0.744719240296626 NA NA prediction 0.489438480593252 Functional Gain - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9985932 chr12:9985931 stopgain 0.103 0 20 hm7G_associated_SNPs_21863 0 0 0 0 1 KLRF1 chr12:9985899 3'AG 9985899 Downstream 33bp 20281 chr7 151042482 151042482 1 + G T BLCA 151042483 + 151042463 151042503 41 AAATTGACCCAGTTTTTAAGGGAAGACAGGATTCAACTTTG AAATTGACCCAGTTTTTAATGGAAGACAGGATTCAACTTTG < 41bp 0.434944881037371 0.744707585571419 NA NA prediction 0.489415171142837 Functional Gain - NUB1 ENSG00000013374 CDS Human protein_coding chr7:151042483 chr7:151042482 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21866 0 0 1 2 1 NUB1 chr7:151042552 5'GT 151042552 Upstream 71bp 20282 chr15 91419518 91419518 1 + G T UCEC 91419519 + 91419499 91419539 41 TTACCACTTCTGGCATCGAGGAGTGACGAAGCGGTCCCTGT TTACCACTTCTGGCATCGATGAGTGACGAAGCGGTCCCTGT < 41bp 0.641683561030429 0.886386664594913 NA NA prediction 0.48940620712897 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91419519 chr15:91419518 stopgain 0.997 0 20 hm7G_associated_SNPs_21867 0 0 1 0 2 FURIN chr15:91419485 3'AG 91419485 Downstream 34bp 20283 chr15 91419518 91419518 1 + G T UCEC 91419519 + 91419499 91419539 41 TTACCACTTCTGGCATCGAGGAGTGACGAAGCGGTCCCTGT TTACCACTTCTGGCATCGATGAGTGACGAAGCGGTCCCTGT < 41bp 0.641683561030429 0.886386664594913 NA NA prediction 0.48940620712897 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91419519 chr15:91419518 stopgain 0.997 0 20 hm7G_associated_SNPs_21867 0 0 1 0 2 FURIN chr15:91419583 5'GT 91419583 Upstream 66bp 20284 chr6 97423964 97423964 1 + G T STAD 97423965 + 97423945 97423985 41 GAATCAGCAGAGGAGTGATGGCATCCTCTGCGACATCACCC GAATCAGCAGAGGAGTGATTGCATCCTCTGCGACATCACCC < 41bp 0.401340849861556 0.744696771083349 NA NA prediction 0.489393542166698 Functional Gain - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97423965 chr6:97423964 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_21869 0 0 0 0 2 KLHL32 chr6:97423873 3'AG 97423873 Downstream 92bp 20285 chr6 97423964 97423964 1 + G T STAD 97423965 + 97423945 97423985 41 GAATCAGCAGAGGAGTGATGGCATCCTCTGCGACATCACCC GAATCAGCAGAGGAGTGATTGCATCCTCTGCGACATCACCC < 41bp 0.401340849861556 0.744696771083349 NA NA prediction 0.489393542166698 Functional Gain - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97423965 chr6:97423964 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_21869 0 0 0 0 2 KLHL32 chr6:97424053 5'GT 97424053 Upstream 90bp 20286 chr5 173534364 173534364 1 + G T LUAD 173534365 + 173534345 173534385 41 ATGCTTACTACTCCTCCCAGGACCCCAATTCCAGAAGCCGC ATGCTTACTACTCCTCCCATGACCCCAATTCCAGAAGCCGC < 41bp 0.625118691114803 0.869793549432795 NA NA prediction 0.489349716635983 Functional Gain - HMP19 ENSG00000170091 CDS Human protein_coding chr5:173534365 chr5:173534364 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21871 0 0 0 0 1 HMP19 chr5:173534317 3'AG 173534317 Downstream 48bp 20287 chr9 131704027 131704027 1 + G T HNSC 131704028 + 131704008 131704048 41 AGGAGCCCTCGCCCCTCCCGGGTGAAGCTGTGGGCTGTAAA AGGAGCCCTCGCCCCTCCCTGGTGAAGCTGTGGGCTGTAAA < 41bp 0.410520614664505 0.744648463331738 NA NA prediction 0.489296926663476 Functional Gain - PHYHD1 ENSG00000175287 CDS Human protein_coding chr9:131704028 chr9:131704027 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_21876 0 0 1 0 1 PHYHD1 chr9:131703947 3'AG 131703947 Downstream 81bp 20288 chr15 39886569 39886569 1 + G T LIHC 39886570 + 39886550 39886590 41 CTATGATAAAACCTATGCTGGTGGTAGACTAGGGTTGTTTG CTATGATAAAACCTATGCTTGTGGTAGACTAGGGTTGTTTG < 41bp 0.424930542682309 0.744643505426503 NA NA prediction 0.489287010853005 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39886570 chr15:39886569 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_21877 0 0 1 0 1 THBS1 chr15:39886641 5'GT 39886641 Upstream 73bp 20289 chr15 34646855 34646855 1 + G T UCEC 34646856 + 34646836 34646876 41 AAGAAGGGCAGCAGCAGGAGGAGGAAGGGATGTATCCAGAT AAGAAGGGCAGCAGCAGGATGAGGAAGGGATGTATCCAGAT < 41bp 0.63794498751181 0.882584256798694 NA NA prediction 0.489278538573768 Functional Gain - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34646856 chr15:34646855 nonsynonymous SNV 0.920 0 20 hm7G_associated_SNPs_21879 0 0 0 0 1 NUTM1 chr15:34646933 5'GT 34646933 Upstream 79bp 20290 chr1 57373749 57373749 1 + G T UCEC 57373750 + 57373730 57373770 41 ACATACCGTTCCTGGGGGAGGTCATTAAAGTATAATCCTGT ACATACCGTTCCTGGGGGATGTCATTAAAGTATAATCCTGT < 41bp 0.4276136277286 0.744630033062788 NA NA prediction 0.489260066125575 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57373750 chr1:57373749 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_21881 0 0 1 0 1 C8A chr1:57373786 5'GT 57373786 Upstream 38bp 20291 chr19 46664088 46664088 1 + G T LUAD 46664089 + 46664069 46664109 41 TTGTGAAGCTGAAGGTTCAGGGTGTGAATTCCCAGTGCCAC TTGTGAAGCTGAAGGTTCATGGTGTGAATTCCCAGTGCCAC < 41bp 0.625110125386783 0.869717383622222 NA NA prediction 0.489214516470876 Functional Gain - IGFL2 ENSG00000204866 CDS Human protein_coding chr19:46664089 chr19:46664088 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_21882 0 0 0 0 1 IGFL2 chr19:46664138 5'GT 46664138 Upstream 51bp 20292 chr12 97330991 97330991 1 + G T COAD 97330992 + 97330972 97331012 41 TCAGTCAAGTTTAAATAAAGGCTGTTCAAATAAGCCCACAA TCAGTCAAGTTTAAATAAATGCTGTTCAAATAAGCCCACAA < 41bp 0.61694488773429 0.861533342742189 NA NA prediction 0.489176910015798 Functional Gain - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97330992 chr12:97330991 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_21884 0 0 1 0 1 NEDD1 chr12:97330976 3'AG 97330976 Downstream 16bp 20293 chr11 113849989 113849989 1 + G T SARC 113849990 + 113849970 113850010 41 GTGCTGACCACCTACATCTGGTACCGGCAGGTGAGCAGACC GTGCTGACCACCTACATCTTGTACCGGCAGGTGAGCAGACC < 41bp 0.640541799453553 0.885123472497529 NA NA prediction 0.489163346087952 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113849990 chr11:113849989 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21885 0 0 0 0 2 HTR3A chr11:113849955 3'AG 113849955 Downstream 35bp 20294 chr11 113849989 113849989 1 + G T SARC 113849990 + 113849970 113850010 41 GTGCTGACCACCTACATCTGGTACCGGCAGGTGAGCAGACC GTGCTGACCACCTACATCTTGTACCGGCAGGTGAGCAGACC < 41bp 0.640541799453553 0.885123472497529 NA NA prediction 0.489163346087952 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113849990 chr11:113849989 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21885 0 0 0 0 2 HTR3A chr11:113849999 5'GT 113849999 Upstream 11bp 20295 chr3 1425058 1425058 1 + G T COAD 1425059 + 1425039 1425079 41 TCATGGAATGCTATTGCCTGGAATAGAAACACTGGAAGAGT TCATGGAATGCTATTGCCTTGAATAGAAACACTGGAAGAGT < 41bp 0.425699726735425 0.744576613453395 NA NA prediction 0.489153226906789 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425059 chr3:1425058 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21886 0 0 0 0 2 CNTN6 chr3:1424977 3'AG 1424977 Downstream 82bp 20296 chr3 1425058 1425058 1 + G T COAD 1425059 + 1425039 1425079 41 TCATGGAATGCTATTGCCTGGAATAGAAACACTGGAAGAGT TCATGGAATGCTATTGCCTTGAATAGAAACACTGGAAGAGT < 41bp 0.425699726735425 0.744576613453395 NA NA prediction 0.489153226906789 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1425059 chr3:1425058 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21886 0 0 0 0 2 CNTN6 chr3:1425092 5'GT 1425092 Upstream 35bp 20297 chr11 6292037 6292037 1 + G T LUSC 6292038 + 6292018 6292058 41 CAAGGCGGGCTGCCAGGTGGGGCTGGACCACGTGAGCAAAA CAAGGCGGGCTGCCAGGTGTGGCTGGACCACGTGAGCAAAA < 41bp 0.411859378988205 0.744554946475397 NA NA prediction 0.489109892950794 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6292038 chr11:6292037 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_21889 0 0 0 0 1 CCKBR chr11:6292048 5'GT 6292048 Upstream 12bp 20298 chr3 149216671 149216671 1 + G T GBM 149216672 + 149216652 149216692 41 TCCTGGGGACCCTCTGTGGGGACTGCCAGTGTTGTGGCTGC TCCTGGGGACCCTCTGTGGTGACTGCCAGTGTTGTGGCTGC < 41bp 0.619888527221164 0.864426432599885 NA NA prediction 0.48907581075744 Functional Gain - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149216672 chr3:149216671 synonymous SNV . 0 20 hm7G_associated_SNPs_21892 0 0 0 0 1 TM4SF4 chr3:149216698 5'GT 149216698 Upstream 28bp 20299 chr11 89421765 89421765 1 + G T SKCM 89421766 + 89421746 89421786 41 TAAAAGGATAAGCAAATTGGGATCTGGAAATGATTTTGAGG TAAAAGGATAAGCAAATTGTGATCTGGAAATGATTTTGAGG < 41bp 0.57894634766937 0.823433387109757 NA NA prediction 0.488974078880774 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89421766 chr11:89421765 . . 0 20 hm7G_associated_SNPs_21896 0 0 0 0 2 FOLH1B chr11:89421752 3'AG 89421752 Downstream 14bp 20300 chr11 89421765 89421765 1 + G T SKCM 89421766 + 89421746 89421786 41 TAAAAGGATAAGCAAATTGGGATCTGGAAATGATTTTGAGG TAAAAGGATAAGCAAATTGTGATCTGGAAATGATTTTGAGG < 41bp 0.57894634766937 0.823433387109757 NA NA prediction 0.488974078880774 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89421766 chr11:89421765 . . 0 20 hm7G_associated_SNPs_21896 0 0 0 0 2 FOLH1B chr11:89421842 5'GT 89421842 Upstream 78bp 20301 chr3 186570917 186570917 1 + G T UCEC 186570918 + 186570898 186570938 41 CCAGGAAACCACGACTCAAGGGCCCGGAGTCCTGCTTCCCC CCAGGAAACCACGACTCAATGGCCCGGAGTCCTGCTTCCCC < 41bp 0.436332567037293 0.744462728182462 NA NA prediction 0.488925456364923 Functional Gain - ADIPOQ ENSG00000181092 CDS Human antisense chr3:186570918 chr3:186570917 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_21900 0 0 0 0 1 ADIPOQ-AS1 chr3:186570840 3'AG 186570840 Downstream 78bp 20302 chr5 122152717 122152717 1 + G T UCEC 122152718 + 122152698 122152738 41 CAATCAAGATGAATGAATCGGATGCAGTAAGAGCTGATTTT CAATCAAGATGAATGAATCTGATGCAGTAAGAGCTGATTTT < 41bp 0.613766391977534 0.858197815125576 NA NA prediction 0.488862846296086 Functional Gain - SNX2 ENSG00000205302 CDS Human protein_coding chr5:122152718 chr5:122152717 synonymous SNV . 0 20 hm7G_associated_SNPs_21903 0 0 1 0 1 SNX2 chr5:122152723 5'GT 122152723 Upstream 7bp 20303 chr1 43774720 43774720 1 + G T UCEC 43774721 + 43774701 43774741 41 AACTTAGAGACGATGCCCCGGATCAACTGTGCAGCTGCAGG AACTTAGAGACGATGCCCCTGATCAACTGTGCAGCTGCAGG < 41bp 0.406304729470939 0.744428588681626 NA NA prediction 0.488857177363252 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43774721 chr1:43774720 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21904 0 0 0 0 2 TIE1 chr1:43774657 3'AG 43774657 Downstream 64bp 20304 chr1 43774720 43774720 1 + G T UCEC 43774721 + 43774701 43774741 41 AACTTAGAGACGATGCCCCGGATCAACTGTGCAGCTGCAGG AACTTAGAGACGATGCCCCTGATCAACTGTGCAGCTGCAGG < 41bp 0.406304729470939 0.744428588681626 NA NA prediction 0.488857177363252 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43774721 chr1:43774720 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21904 0 0 0 0 2 TIE1 chr1:43774802 5'GT 43774802 Upstream 83bp 20305 chr19 36278580 36278580 1 + G T UCEC 36278581 + 36278561 36278601 41 TTCTTCTCCCCAGCCCCCAGGGAGTGCCTGCCACCCTTCCT TTCTTCTCCCCAGCCCCCATGGAGTGCCTGCCACCCTTCCT < 41bp 0.411294416430039 0.744423377366148 NA NA prediction 0.488846754732296 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278581 chr19:36278580 nonsynonymous SNV 0.682 2 20 hm7G_associated_SNPs_21906 0 0 1 0 1 ARHGAP33 chr19:36278546 3'AG 36278546 Downstream 35bp 20306 chr12 117448145 117448145 1 + G T LUSC 117448146 + 117448126 117448166 41 AGATCCTGGTGTATAGCCTGGAAGCAGGACGCCGCCTCTTG AGATCCTGGTGTATAGCCTTGAAGCAGGACGCCGCCTCTTG < 41bp 0.639129941036047 0.883534947800524 NA NA prediction 0.488810013528954 Functional Gain - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117448146 chr12:117448145 synonymous SNV . 0 20 hm7G_associated_SNPs_21908 0 0 0 0 1 FBXW8 chr12:117448128 3'AG 117448128 Downstream 18bp 20307 chr22 47057313 47057313 1 + G T ESCA 47057314 + 47057294 47057334 41 GCTCAGCAGCCCCCAAAAGGGCAGGCCCAGGCCAGCAATGG GCTCAGCAGCCCCCAAAAGTGCAGGCCCAGGCCAGCAATGG < 41bp 0.393448333180103 0.744383085795032 NA NA prediction 0.488766171590064 Functional Gain - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47057314 chr22:47057313 nonsynonymous SNV 0.212 0 20 hm7G_associated_SNPs_21911 0 0 1 0 2 GRAMD4 chr22:47057278 3'AG 47057278 Downstream 36bp 20308 chr22 47057313 47057313 1 + G T ESCA 47057314 + 47057294 47057334 41 GCTCAGCAGCCCCCAAAAGGGCAGGCCCAGGCCAGCAATGG GCTCAGCAGCCCCCAAAAGTGCAGGCCCAGGCCAGCAATGG < 41bp 0.393448333180103 0.744383085795032 NA NA prediction 0.488766171590064 Functional Gain - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47057314 chr22:47057313 nonsynonymous SNV 0.212 0 20 hm7G_associated_SNPs_21911 0 0 1 0 2 GRAMD4 chr22:47057339 5'GT 47057339 Upstream 27bp 20309 chr22 46752778 46752778 1 + G T THCA 46752779 + 46752759 46752799 41 GGACGAGTGCCTGGGCAGCGGGAAGATCCTGCGGCTGGGGC GGACGAGTGCCTGGGCAGCTGGAAGATCCTGCGGCTGGGGC < 41bp 0.627333847306214 0.871710784901385 NA NA prediction 0.488753875190342 Functional Gain - TRMU ENSG00000100416 CDS Human protein_coding chr22:46752779 chr22:46752778 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21913 0 0 1 0 1 TRMU chr22:46752739 3'AG 46752739 Downstream 40bp 20310 chr11 66366958 66366958 1 + G T rs61731811 66366959 + 66366939 66366979 41 GGGCAGCAGTGGCCATCCTGGGGGGGCCTGGCACCGTGCAG GGGCAGCAGTGGCCATCCTTGGGGGGCCTGGCACCGTGCAG < 41bp 0.387263223245865 0.744364076419642 NA NA prediction 0.488728152839285 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66366959 chr11:66366958 synonymous SNV . 0 20 hm7G_associated_SNPs_21915 0 0 1 0 1 CCS chr11:66366930 3'AG 66366930 Downstream 29bp 20311 chr2 136511773 136511773 1 + G T UCEC 136511774 + 136511754 136511794 41 TTTCTTTATTGGAGACAGTGGAATTCCCTTGGAAGTAATAG TTTCTTTATTGGAGACAGTTGAATTCCCTTGGAAGTAATAG < 41bp 0.539248028876621 0.783607768973072 NA NA prediction 0.488719480192903 Functional Gain - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136511774 chr2:136511773 stopgain 1.000 1 20 hm7G_associated_SNPs_21916 0 0 1 0 2 UBXN4 chr2:136511729 3'AG 136511729 Downstream 45bp 20312 chr2 136511773 136511773 1 + G T UCEC 136511774 + 136511754 136511794 41 TTTCTTTATTGGAGACAGTGGAATTCCCTTGGAAGTAATAG TTTCTTTATTGGAGACAGTTGAATTCCCTTGGAAGTAATAG < 41bp 0.539248028876621 0.783607768973072 NA NA prediction 0.488719480192903 Functional Gain - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136511774 chr2:136511773 stopgain 1.000 1 20 hm7G_associated_SNPs_21916 0 0 1 0 2 UBXN4 chr2:136511847 5'GT 136511847 Upstream 75bp 20313 chr1 203030799 203030799 1 + G T BRCA 203030800 + 203030780 203030820 41 GACAGTGAGGAGGGCAGCTGGGCTCAGGTAAGACTCCCTAC GACAGTGAGGAGGGCAGCTTGGCTCAGGTAAGACTCCCTAC < 41bp 0.413417352558948 0.744354528596247 NA NA prediction 0.488709057192494 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203030800 chr1:203030799 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21917 0 0 0 0 2 PPFIA4 chr1:203030780 3'AG 203030780 Downstream 20bp 20314 chr1 203030799 203030799 1 + G T BRCA 203030800 + 203030780 203030820 41 GACAGTGAGGAGGGCAGCTGGGCTCAGGTAAGACTCCCTAC GACAGTGAGGAGGGCAGCTTGGCTCAGGTAAGACTCCCTAC < 41bp 0.413417352558948 0.744354528596247 NA NA prediction 0.488709057192494 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203030800 chr1:203030799 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_21917 0 0 0 0 2 PPFIA4 chr1:203030806 5'GT 203030806 Upstream 8bp 20315 chr11 89420564 89420564 1 + G T LUSC 89420565 + 89420545 89420585 41 AAATCTCTTTATGAAAGTTGGACTAAAAAAAGTCCTTCCCC AAATCTCTTTATGAAAGTTTGACTAAAAAAAGTCCTTCCCC < 41bp 0.583225346913308 0.827573949874724 NA NA prediction 0.488697205922832 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89420565 chr11:89420564 . . 0 20 hm7G_associated_SNPs_21918 0 0 0 0 2 FOLH1B chr11:89420515 3'AG 89420515 Downstream 50bp 20316 chr11 89420564 89420564 1 + G T LUSC 89420565 + 89420545 89420585 41 AAATCTCTTTATGAAAGTTGGACTAAAAAAAGTCCTTCCCC AAATCTCTTTATGAAAGTTTGACTAAAAAAAGTCCTTCCCC < 41bp 0.583225346913308 0.827573949874724 NA NA prediction 0.488697205922832 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89420565 chr11:89420564 . . 0 20 hm7G_associated_SNPs_21918 0 0 0 0 2 FOLH1B chr11:89420606 5'GT 89420606 Upstream 43bp 20317 chr2 118579625 118579625 1 + G T LUAD 118579626 + 118579606 118579646 41 CCACACCAGGCCGTCTGCTGGACCATATGCAGGTAAGAGAT CCACACCAGGCCGTCTGCTTGACCATATGCAGGTAAGAGAT < 41bp 0.608989831631702 0.853319211199309 NA NA prediction 0.488658759135213 Functional Gain - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118579626 chr2:118579625 synonymous SNV . 0 20 hm7G_associated_SNPs_21920 0 0 1 0 1 DDX18 chr2:118579637 5'GT 118579637 Upstream 13bp 20318 chr16 88871286 88871286 1 + G T CESC 88871287 + 88871267 88871307 41 CCTGCACCCCAGAGGCCGAGGGCCGCCCTGAGGAGCCATGG CCTGCACCCCAGAGGCCGATGGCCGCCCTGAGGAGCCATGG < 41bp 0.402715604280755 0.744326411311958 NA NA prediction 0.488652822623916 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88871287 chr16:88871286 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_21922 0 0 1 0 1 CDT1 chr16:88871306 5'GT 88871306 Upstream 21bp 20319 chr13 25266592 25266592 1 + G T LUAD 25266593 + 25266573 25266613 41 CTGTCGCTGACAGCAAAACGGATGGCCAAGAAGAACTGCCT CTGTCGCTGACAGCAAAACTGATGGCCAAGAAGAACTGCCT < 41bp 0.617561444671163 0.861885132481267 NA NA prediction 0.488647375620209 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25266593 chr13:25266592 nonsynonymous SNV 0.964 5 20 hm7G_associated_SNPs_21923 0 0 0 0 1 ATP12A chr13:25266567 3'AG 25266567 Downstream 26bp 20320 chr1 118485096 118485096 1 + G T LUAD 118485097 + 118485077 118485117 41 GAGAGGAGGAAGATCCTGAGGTTAATGTTGAAATGAGTCTG GAGAGGAGGAAGATCCTGATGTTAATGTTGAAATGAGTCTG < 41bp 0.420142954082568 0.744315878231362 NA NA prediction 0.488631756462724 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118485097 chr1:118485096 nonsynonymous SNV 0.014 1 20 hm7G_associated_SNPs_21925 0 0 1 0 2 WDR3 chr1:118485060 3'AG 118485060 Downstream 37bp 20321 chr1 118485096 118485096 1 + G T LUAD 118485097 + 118485077 118485117 41 GAGAGGAGGAAGATCCTGAGGTTAATGTTGAAATGAGTCTG GAGAGGAGGAAGATCCTGATGTTAATGTTGAAATGAGTCTG < 41bp 0.420142954082568 0.744315878231362 NA NA prediction 0.488631756462724 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118485097 chr1:118485096 nonsynonymous SNV 0.014 1 20 hm7G_associated_SNPs_21925 0 0 1 0 2 WDR3 chr1:118485167 5'GT 118485167 Upstream 72bp 20322 chr11 6262914 6262914 1 + G T LUAD 6262915 + 6262895 6262935 41 GATGTACATCATCCGAGAGGGTCAACTGGCCGTGGTGGCAG GATGTACATCATCCGAGAGTGTCAACTGGCCGTGGTGGCAG < 41bp 0.621731667279192 0.866029450355381 NA NA prediction 0.488595566152378 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6262915 chr11:6262914 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_21929 0 0 0 0 1 CNGA4 chr11:6263010 5'GT 6263010 Upstream 97bp 20323 chr19 15164396 15164396 1 + G T GBM 15164397 + 15164377 15164417 41 GCTCTGGAACACATGTTTCGGCAGCTGAGATTCGAAAGCAC GCTCTGGAACACATGTTTCTGCAGCTGAGATTCGAAAGCAC < 41bp 0.636511395101267 0.880804875039716 NA NA prediction 0.488586959876899 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164397 chr19:15164396 nonsynonymous SNV 0.350 0 20 hm7G_associated_SNPs_21930 0 0 0 0 1 CASP14 chr19:15164442 5'GT 15164442 Upstream 47bp 20324 chr1 17296392 17296392 1 + G T LUAD 17296393 + 17296373 17296413 41 GCTGACCTGGAACTGCAGCGGGTGGAGGCCGAGGGCCAGCT GCTGACCTGGAACTGCAGCTGGTGGAGGCCGAGGGCCAGCT < 41bp 0.640056861853153 0.884348349552008 NA NA prediction 0.48858297539771 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17296393 chr1:17296392 nonsynonymous SNV 0.911 2 20 hm7G_associated_SNPs_21931 0 0 1 0 1 CROCC chr1:17296429 5'GT 17296429 Upstream 38bp 20325 chr11 67198888 67198888 1 + G T LUAD 67198889 + 67198869 67198909 41 GCACACACACGGGCTGAGCGGAACATTCTAGAGTCAGTGAA GCACACACACGGGCTGAGCTGAACATTCTAGAGTCAGTGAA < 41bp 0.640291989776749 0.884581602945939 NA NA prediction 0.48857922633838 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67198889 chr11:67198888 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21932 0 0 1 0 2 RPS6KB2 chr11:67198839 3'AG 67198839 Downstream 50bp 20326 chr11 67198888 67198888 1 + G T LUAD 67198889 + 67198869 67198909 41 GCACACACACGGGCTGAGCGGAACATTCTAGAGTCAGTGAA GCACACACACGGGCTGAGCTGAACATTCTAGAGTCAGTGAA < 41bp 0.640291989776749 0.884581602945939 NA NA prediction 0.48857922633838 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67198889 chr11:67198888 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_21932 0 0 1 0 2 RPS6KB2 chr11:67198986 5'GT 67198986 Upstream 99bp 20327 chr2 220466796 220466796 1 + G T STAD 220466797 + 220466777 220466817 41 TTTGCAGCAGGAGCCTCCAGGCATTAGAGGTAAGGAGAGTG TTTGCAGCAGGAGCCTCCATGCATTAGAGGTAAGGAGAGTG < 41bp 0.645796578071875 0.890076150193759 NA NA prediction 0.488559144243768 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220466797 chr2:220466796 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_21933 0 0 1 0 2 STK11IP chr2:220466710 3'AG 220466710 Downstream 87bp 20328 chr2 220466796 220466796 1 + G T STAD 220466797 + 220466777 220466817 41 TTTGCAGCAGGAGCCTCCAGGCATTAGAGGTAAGGAGAGTG TTTGCAGCAGGAGCCTCCATGCATTAGAGGTAAGGAGAGTG < 41bp 0.645796578071875 0.890076150193759 NA NA prediction 0.488559144243768 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220466797 chr2:220466796 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_21933 0 0 1 0 2 STK11IP chr2:220466805 5'GT 220466805 Upstream 10bp 20329 chr2 102959790 102959790 1 + G T COAD 102959791 + 102959771 102959811 41 TAGCTGACGTGAAGGAAGAGGATTTATTGCTGCAGTACGAC TAGCTGACGTGAAGGAAGATGATTTATTGCTGCAGTACGAC < 41bp 0.430381261758023 0.744260600423313 NA NA prediction 0.488521200846626 Functional Gain - IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102959791 chr2:102959790 nonsynonymous SNV 0.040 1 20 hm7G_associated_SNPs_21934 0 0 0 0 2 IL1RL1 chr2:102959730 3'AG 102959730 Downstream 61bp 20330 chr2 102959790 102959790 1 + G T COAD 102959791 + 102959771 102959811 41 TAGCTGACGTGAAGGAAGAGGATTTATTGCTGCAGTACGAC TAGCTGACGTGAAGGAAGATGATTTATTGCTGCAGTACGAC < 41bp 0.430381261758023 0.744260600423313 NA NA prediction 0.488521200846626 Functional Gain - IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102959791 chr2:102959790 nonsynonymous SNV 0.040 1 20 hm7G_associated_SNPs_21934 0 0 0 0 2 IL1RL1 chr2:102959875 5'GT 102959875 Upstream 86bp 20331 chr5 141524181 141524181 1 + G T OV 141524182 + 141524162 141524202 41 ATCAATTATGCAAAAGTTCGGAAGATGCCAGAAACTTTCTC ATCAATTATGCAAAAGTTCTGAAGATGCCAGAAACTTTCTC < 41bp 0.583388798405946 0.827636023865638 NA NA prediction 0.488494450919384 Functional Gain - NDFIP1 ENSG00000131507 CDS Human protein_coding chr5:141524182 chr5:141524181 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21935 0 0 1 0 2 NDFIP1 chr5:141524136 3'AG 141524136 Downstream 46bp 20332 chr5 141524181 141524181 1 + G T OV 141524182 + 141524162 141524202 41 ATCAATTATGCAAAAGTTCGGAAGATGCCAGAAACTTTCTC ATCAATTATGCAAAAGTTCTGAAGATGCCAGAAACTTTCTC < 41bp 0.583388798405946 0.827636023865638 NA NA prediction 0.488494450919384 Functional Gain - NDFIP1 ENSG00000131507 CDS Human protein_coding chr5:141524182 chr5:141524181 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21935 0 0 1 0 2 NDFIP1 chr5:141524241 5'GT 141524241 Upstream 61bp 20333 chr21 34617320 34617320 1 + G T UCEC 34617321 + 34617301 34617341 41 TCCGGTCCATCTTATCATGGGAATTAAAAAACCACTCCATT TCCGGTCCATCTTATCATGTGAATTAAAAAACCACTCCATT < 41bp 0.417528520661548 0.744219174113824 NA NA prediction 0.488438348227647 Functional Gain - IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34617321 chr21:34617320 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_21936 0 0 1 0 2 IFNAR2 chr21:34617256 3'AG 34617256 Downstream 65bp 20334 chr21 34617320 34617320 1 + G T UCEC 34617321 + 34617301 34617341 41 TCCGGTCCATCTTATCATGGGAATTAAAAAACCACTCCATT TCCGGTCCATCTTATCATGTGAATTAAAAAACCACTCCATT < 41bp 0.417528520661548 0.744219174113824 NA NA prediction 0.488438348227647 Functional Gain - IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34617321 chr21:34617320 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_21936 0 0 1 0 2 IFNAR2 chr21:34617379 5'GT 34617379 Upstream 60bp 20335 chr7 142829278 142829278 1 + G T UCEC 142829279 + 142829259 142829299 41 TGGTTCTCTGCCTGCAGTTGGGGGCCAACAAAGCTCAGGAC TGGTTCTCTGCCTGCAGTTTGGGGCCAACAAAGCTCAGGAC < 41bp 0.619769824671607 0.863975048544208 NA NA prediction 0.488410447745201 Functional Gain - PIP ENSG00000159763 CDS Human protein_coding chr7:142829279 chr7:142829278 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_21937 0 0 0 0 1 PIP chr7:142829304 5'GT 142829304 Upstream 27bp 20336 chr17 32647842 32647842 1 + G T UCEC 32647843 + 32647823 32647863 41 TCAAGACCAAACGGGGCAAGGAGGTCTGTGCTGACCCCAAG TCAAGACCAAACGGGGCAATGAGGTCTGTGCTGACCCCAAG < 41bp 0.611873781178548 0.85606588065314 NA NA prediction 0.488384198949184 Functional Gain - CCL8 ENSG00000108700 CDS Human protein_coding chr17:32647843 chr17:32647842 nonsynonymous SNV 0.164 0 20 hm7G_associated_SNPs_21938 0 0 0 0 1 CCL8 chr17:32647821 3'AG 32647821 Downstream 22bp 20337 chr1 163318735 163318735 1 + G T COAD 163318736 + 163318716 163318756 41 TGTCTCGATTTTCTTTCAGGGATTGCAATAAAGTTCAAGAA TGTCTCGATTTTCTTTCAGTGATTGCAATAAAGTTCAAGAA < 41bp 0.615505453003668 0.859691074101798 NA NA prediction 0.48837124219626 Functional Gain - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163318736 chr1:163318735 nonsynonymous SNV 0.929 3 20 hm7G_associated_SNPs_21939 0 0 1 0 1 NUF2 chr1:163318735 3'AG 163318735 Downstream 1bp 20338 chr1 12919641 12919641 1 + G T UCEC 12919642 + 12919622 12919662 41 CCCTGTCCTGCTTCCCAGAGGCCATGAGTAAGAGGCAGACA CCCTGTCCTGCTTCCCAGATGCCATGAGTAAGAGGCAGACA < 41bp 0.635340522161359 0.879520528667741 NA NA prediction 0.488360013012764 Functional Gain - PRAMEF2 ENSG00000120952 CDS Human protein_coding chr1:12919642 chr1:12919641 nonsynonymous SNV 0.009 2 20 hm7G_associated_SNPs_21940 0 0 0 0 1 PRAMEF2 chr1:12919548 3'AG 12919548 Downstream 94bp 20339 chr7 99017041 99017041 1 + G T LUSC 99017042 + 99017022 99017062 41 CATCGAGTGCACACACTGTGGCTGTCGTGGCTGCTCTGGCT CATCGAGTGCACACACTGTTGCTGTCGTGGCTGCTCTGGCT < 41bp 0.412718735400961 0.744174206853789 NA NA prediction 0.488348413707577 Functional Gain - BUD31 ENSG00000106245 CDS Human protein_coding chr7:99017042 chr7:99017041 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_21941 0 0 1 0 1 BUD31 chr7:99017014 3'AG 99017014 Downstream 28bp 20340 chr22 31493257 31493257 1 + G T LUAD 31493258 + 31493238 31493278 41 CTTCCCCTTTTTTGCAGATGGCAGTGGCAGCACCATGATGC CTTCCCCTTTTTTGCAGATTGCAGTGGCAGCACCATGATGC < 41bp 0.407674566581639 0.744167880162059 NA NA prediction 0.488335760324119 Functional Gain - SMTN ENSG00000183963 CDS Human protein_coding chr22:31493258 chr22:31493257 nonsynonymous SNV 0.843 3 20 hm7G_associated_SNPs_21942 0 0 1 0 2 SMTN chr22:31493255 3'AG 31493255 Downstream 3bp 20341 chr22 31493257 31493257 1 + G T LUAD 31493258 + 31493238 31493278 41 CTTCCCCTTTTTTGCAGATGGCAGTGGCAGCACCATGATGC CTTCCCCTTTTTTGCAGATTGCAGTGGCAGCACCATGATGC < 41bp 0.407674566581639 0.744167880162059 NA NA prediction 0.488335760324119 Functional Gain - SMTN ENSG00000183963 CDS Human protein_coding chr22:31493258 chr22:31493257 nonsynonymous SNV 0.843 3 20 hm7G_associated_SNPs_21942 0 0 1 0 2 SMTN chr22:31493324 5'GT 31493324 Upstream 68bp 20342 chr17 74902137 74902137 1 + G T LUAD 74902138 + 74902118 74902158 41 TTCCTGACGGAGGAGTCCGGGGACGTGTTCAGCCCTCGGGT TTCCTGACGGAGGAGTCCGTGGACGTGTTCAGCCCTCGGGT < 41bp 0.390902464445646 0.744149289783926 NA NA prediction 0.488298579567852 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74902138 chr17:74902137 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_21943 0 0 0 0 1 MGAT5B chr17:74902100 3'AG 74902100 Downstream 38bp 20343 chr12 97337452 97337452 1 + G T LIHC 97337453 + 97337433 97337473 41 GTTTTTATGGGATCTCCAGGGAAAGAGGAAAATGAAAACCG GTTTTTATGGGATCTCCAGTGAAAGAGGAAAATGAAAACCG < 41bp 0.617858963168284 0.862001581993457 NA NA prediction 0.488285237650345 Functional Gain - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97337453 chr12:97337452 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_21944 0 0 1 0 1 NEDD1 chr12:97337540 5'GT 97337540 Upstream 89bp 20344 chr19 56925444 56925444 1 + G T CESC 56925445 + 56925425 56925465 41 TGGAGAACTACAGGAGCTTGGTATCATTGGGTAAGGACATG TGGAGAACTACAGGAGCTTTGTATCATTGGGTAAGGACATG < 41bp 0.41916078782949 0.74410866410675 NA NA prediction 0.4882173282135 Functional Gain - ZNF583 ENSG00000198440 CDS Human protein_coding chr19:56925445 chr19:56925444 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_21946 0 0 1 0 1 ZNF583 chr19:56925454 5'GT 56925454 Upstream 11bp 20345 chrX 1409342 1409342 1 + G T UCEC 1409343 + 1409323 1409363 41 CAATTACTTTCTGGTTAACGGAACCAGCCGAGAAATTGGCA CAATTACTTTCTGGTTAACTGAACCAGCCGAGAAATTGGCA < 41bp 0.585051491989537 0.829159987827763 NA NA prediction 0.488216991676451 Functional Gain - CSF2RA ENSG00000198223 CDS Human protein_coding chrX:1409343 chrX:1409342 stopgain 0.003 0 20 hm7G_associated_SNPs_21947 0 0 0 0 1 CSF2RA chrX:1409402 5'GT 1409402 Upstream 61bp 20346 chr17 39977920 39977920 1 + G T PAAD 39977921 + 39977901 39977941 41 TCCAGCCCGGGGAGTCCCAGGCAGTGCTGTGCTGCTGTTTG TCCAGCCCGGGGAGTCCCATGCAGTGCTGTGCTGCTGTTTG < 41bp 0.403906316882379 0.744097403021205 NA NA prediction 0.488194806042409 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39977921 chr17:39977920 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_21948 0 0 1 0 1 FKBP10 chr17:39977906 3'AG 39977906 Downstream 15bp 20347 chr19 17844222 17844222 1 + G T LUAD 17844223 + 17844203 17844243 41 TGGCCAGCAAGCAGCATTGGGACCGTGACCTGCAGGTGCGT TGGCCAGCAAGCAGCATTGTGACCGTGACCTGCAGGTGCGT < 41bp 0.400485601339034 0.744076125254325 NA NA prediction 0.48815225050865 Functional Gain - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17844223 chr19:17844222 nonsynonymous SNV 0.139 4 20 hm7G_associated_SNPs_21949 0 0 1 0 1 MAP1S chr19:17844237 5'GT 17844237 Upstream 16bp 20348 chr5 170222292 170222292 1 + G T DLBC 170222293 + 170222273 170222313 41 GCAACAAGAGCTTCACTCTGGATGCCCGCCTCGTGGAGTTC GCAACAAGAGCTTCACTCTTGATGCCCGCCTCGTGGAGTTC < 41bp 0.63682485549466 0.880895193700728 NA NA prediction 0.488140676412136 Functional Gain - GABRP ENSG00000094755 CDS Human protein_coding chr5:170222293 chr5:170222292 synonymous SNV . 0 20 hm7G_associated_SNPs_21950 0 0 0 0 1 GABRP chr5:170222212 3'AG 170222212 Downstream 81bp 20349 chr4 2701490 2701490 1 + G T BLCA 2701491 + 2701471 2701511 41 AGCAGAGGCGGCGGGAGGAGGAGGAGGATGAGGAAGAAGAG AGCAGAGGCGGCGGGAGGATGAGGAGGATGAGGAAGAAGAG < 41bp 0.627643850923551 0.871696021544792 NA NA prediction 0.488104341242483 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2701491 chr4:2701490 nonsynonymous SNV 0.443 0 20 hm7G_associated_SNPs_21952 0 0 0 0 1 FAM193A chr4:2701407 3'AG 2701407 Downstream 84bp 20350 chr7 63720643 63720643 1 + G T UCEC 63720644 + 63720624 63720664 41 TCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTGGATCAC TCATAGAATTCTCTCTGGATGAGTGGCAATGCCTGGATCAC < 41bp 0.621430926174931 0.865482757853047 NA NA prediction 0.488103663356231 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720644 chr7:63720643 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_21953 0 0 0 0 2 ZNF679 chr7:63720599 3'AG 63720599 Downstream 45bp 20351 chr7 63720643 63720643 1 + G T UCEC 63720644 + 63720624 63720664 41 TCATAGAATTCTCTCTGGAGGAGTGGCAATGCCTGGATCAC TCATAGAATTCTCTCTGGATGAGTGGCAATGCCTGGATCAC < 41bp 0.621430926174931 0.865482757853047 NA NA prediction 0.488103663356231 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720644 chr7:63720643 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_21953 0 0 0 0 2 ZNF679 chr7:63720725 5'GT 63720725 Upstream 83bp 20352 chr2 233498669 233498669 1 + G T rs2276557 233498670 + 233498650 233498690 41 ACCCCTACACGGAGTTCCCGGAGTTCAGCCGCCGCCTCATC ACCCCTACACGGAGTTCCCTGAGTTCAGCCGCCGCCTCATC < 41bp 0.407327758121815 0.744041162335599 NA NA prediction 0.488082324671198 Functional Gain - EFHD1 ENSG00000115468 CDS Human protein_coding chr2:233498670 chr2:233498669 stopgain . 0 20 hm7G_associated_SNPs_21955 0 0 0 0 1 EFHD1 chr2:233498716 5'GT 233498716 Upstream 48bp 20353 chr13 42872905 42872905 1 + G T UCEC 42872906 + 42872886 42872926 41 CTTTTGAGCACTTAGAAGAGGAAGAGACTTCAAAGCCATAC CTTTTGAGCACTTAGAAGATGAAGAGACTTCAAAGCCATAC < 41bp 0.435812219539774 0.743994076818978 NA NA prediction 0.487988153637956 Functional Gain - AKAP11 ENSG00000023516 CDS Human protein_coding chr13:42872906 chr13:42872905 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_21958 0 0 1 0 1 AKAP11 chr13:42872933 5'GT 42872933 Upstream 29bp 20354 chr3 43381790 43381790 1 + G T LUAD 43381791 + 43381771 43381811 41 CTTTCCAGCCTAATCACACGGATGCTACAGAGAGATCCCAA CTTTCCAGCCTAATCACACTGATGCTACAGAGAGATCCCAA < 41bp 0.634217783783999 0.87819888040944 NA NA prediction 0.487962193250882 Functional Gain - SNRK ENSG00000163788 CDS Human protein_coding chr3:43381791 chr3:43381790 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_21959 0 0 0 0 1 SNRK chr3:43381779 3'AG 43381779 Downstream 12bp 20355 chr1 247599359 247599359 1 + G T SKCM 247599360 + 247599340 247599380 41 CCCTGACCAGACTCTATGTGGGGGAGAATGCCTTGGGAGAC CCCTGACCAGACTCTATGTTGGGGAGAATGCCTTGGGAGAC < 41bp 0.406365010472533 0.743967102477147 NA NA prediction 0.487934204954294 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247599360 chr1:247599359 synonymous SNV . 0 20 hm7G_associated_SNPs_21960 0 0 0 0 2 NLRP3 chr1:247599272 3'AG 247599272 Downstream 88bp 20356 chr1 247599359 247599359 1 + G T SKCM 247599360 + 247599340 247599380 41 CCCTGACCAGACTCTATGTGGGGGAGAATGCCTTGGGAGAC CCCTGACCAGACTCTATGTTGGGGAGAATGCCTTGGGAGAC < 41bp 0.406365010472533 0.743967102477147 NA NA prediction 0.487934204954294 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247599360 chr1:247599359 synonymous SNV . 0 20 hm7G_associated_SNPs_21960 0 0 0 0 2 NLRP3 chr1:247599442 5'GT 247599442 Upstream 84bp 20357 chr16 27215438 27215438 1 + G T rs569547646 27215439 + 27215419 27215459 41 CCGCGAGAAATGCAGCCCCGGGGAAGGCGCTGAGGAGGGAA CCGCGAGAAATGCAGCCCCTGGGAAGGCGCTGAGGAGGGAA < 41bp 0.407156426024806 0.743962075965879 NA NA prediction 0.487924151931757 Functional Gain - KDM8 ENSG00000155666 CDS Human protein_coding chr16:27215439 chr16:27215438 nonsynonymous SNV 0.007 3 20 hm7G_associated_SNPs_21962 0 0 0 0 1 KDM8 chr16:27215496 5'GT 27215496 Upstream 59bp 20358 chrX 123195704 123195704 1 + G T BRCA 123195705 + 123195685 123195725 41 TGAATGTCATCCTCCCGTGGGAAGAGGGACAGGAAAAAGGG TGAATGTCATCCTCCCGTGTGAAGAGGGACAGGAAAAAGGG < 41bp 0.625683459605704 0.869627231219845 NA NA prediction 0.487887543228281 Functional Gain - STAG2 ENSG00000101972 CDS Human protein_coding chrX:123195705 chrX:123195704 stopgain 1.000 1 20 hm7G_associated_SNPs_21964 0 0 1 0 1 STAG2 chrX:123195621 3'AG 123195621 Downstream 84bp 20359 chr2 228148563 228148563 1 + G T COAD 228148564 + 228148544 228148584 41 TGGGAACCCAGGCACACCAGGGCAGAGGGGTAAGTGATAGA TGGGAACCCAGGCACACCATGGCAGAGGGGTAAGTGATAGA < 41bp 0.406037957967988 0.743922517394527 NA NA prediction 0.487845034789053 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148564 chr2:228148563 nonsynonymous SNV 0.053 5 20 hm7G_associated_SNPs_21965 0 0 0 0 2 COL4A3 chr2:228148483 3'AG 228148483 Downstream 81bp 20360 chr2 228148563 228148563 1 + G T COAD 228148564 + 228148544 228148584 41 TGGGAACCCAGGCACACCAGGGCAGAGGGGTAAGTGATAGA TGGGAACCCAGGCACACCATGGCAGAGGGGTAAGTGATAGA < 41bp 0.406037957967988 0.743922517394527 NA NA prediction 0.487845034789053 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228148564 chr2:228148563 nonsynonymous SNV 0.053 5 20 hm7G_associated_SNPs_21965 0 0 0 0 2 COL4A3 chr2:228148572 5'GT 228148572 Upstream 10bp 20361 chr19 45515474 45515474 1 + G T LUAD 45515475 + 45515455 45515495 41 ACGAGTGCGAGGGCCGCTCGGCCGGCAGCATCCTTGGGGAG ACGAGTGCGAGGGCCGCTCTGCCGGCAGCATCCTTGGGGAG < 41bp 0.645488617281659 0.889388536500697 NA NA prediction 0.487799838438076 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45515475 chr19:45515474 synonymous SNV . 0 20 hm7G_associated_SNPs_21967 0 0 0 0 1 RELB chr19:45515534 5'GT 45515534 Upstream 61bp 20362 chr10 127426967 127426967 1 + G T LUAD 127426968 + 127426948 127426988 41 GAAGATGAATCCTCAAGAGGGGGTCCCGAGGGGCTAGAGAA GAAGATGAATCCTCAAGAGTGGGTCCCGAGGGGCTAGAGAA < 41bp 0.64094397378975 0.88482227032772 NA NA prediction 0.487756593075939 Functional Gain - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127426968 chr10:127426967 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_21968 0 0 1 0 1 EDRF1 chr10:127427014 5'GT 127427014 Upstream 48bp 20363 chr1 150280498 150280498 1 + G T THCA 150280499 + 150280479 150280519 41 CAGAATCCTCACTATGGATGGGCTCATTGAGGACATTAAGC CAGAATCCTCACTATGGATTGGCTCATTGAGGACATTAAGC < 41bp 0.629438500152703 0.873316618630306 NA NA prediction 0.487756236955206 Functional Gain - MRPS21 ENSG00000187145 CDS Human other chr1:150280499 chr1:150280498 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_21969 0 0 1 0 1 MRPS21 chr1:150280482 3'AG 150280482 Downstream 17bp 20364 chr14 31112531 31112531 1 + G T LUAD 31112532 + 31112512 31112552 41 GTCATTTTAGCCATTAACAGGCCAGATATCACAGACACGGA GTCATTTTAGCCATTAACATGCCAGATATCACAGACACGGA < 41bp 0.629983068006884 0.873859142267307 NA NA prediction 0.487752148520846 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31112532 chr14:31112531 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21970 0 0 1 0 2 SCFD1 chr14:31112522 3'AG 31112522 Downstream 10bp 20365 chr14 31112531 31112531 1 + G T LUAD 31112532 + 31112512 31112552 41 GTCATTTTAGCCATTAACAGGCCAGATATCACAGACACGGA GTCATTTTAGCCATTAACATGCCAGATATCACAGACACGGA < 41bp 0.629983068006884 0.873859142267307 NA NA prediction 0.487752148520846 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31112532 chr14:31112531 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_21970 0 0 1 0 2 SCFD1 chr14:31112611 5'GT 31112611 Upstream 81bp 20366 chr18 61587105 61587105 1 + G T UCEC 61587106 + 61587086 61587126 41 CTTCTGATCAAATCAGAAAGGACATCAACTCTTGGGTTGAA CTTCTGATCAAATCAGAAATGACATCAACTCTTGGGTTGAA < 41bp 0.622262894108862 0.866131703288685 NA NA prediction 0.487737618359647 Functional Gain - SERPINB10 ENSG00000242550 CDS Human protein_coding chr18:61587106 chr18:61587105 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_21972 0 0 0 0 1 SERPINB10 chr18:61587022 3'AG 61587022 Downstream 84bp 20367 chr13 26970432 26970432 1 + G T UCEC 26970433 + 26970413 26970453 41 ATTTCACAGATAAAGATTGGGAAGATATAAAAAAGATGCCT ATTTCACAGATAAAGATTGTGAAGATATAAAAAAGATGCCT < 41bp 0.608453582472943 0.85230781794073 NA NA prediction 0.487708470935574 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26970433 chr13:26970432 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21975 0 0 0 0 2 CDK8 chr13:26970422 3'AG 26970422 Downstream 11bp 20368 chr13 26970432 26970432 1 + G T UCEC 26970433 + 26970413 26970453 41 ATTTCACAGATAAAGATTGGGAAGATATAAAAAAGATGCCT ATTTCACAGATAAAGATTGTGAAGATATAAAAAAGATGCCT < 41bp 0.608453582472943 0.85230781794073 NA NA prediction 0.487708470935574 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26970433 chr13:26970432 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_21975 0 0 0 0 2 CDK8 chr13:26970491 5'GT 26970491 Upstream 60bp 20369 chr1 22927868 22927868 1 + G T LUAD 22927869 + 22927849 22927889 41 GCGGTGGGGGCCTCACCGTGGGGGACTGGCTGGACTCCATC GCGGTGGGGGCCTCACCGTTGGGGACTGGCTGGACTCCATC < 41bp 0.392106674294888 0.743850998205569 NA NA prediction 0.487701996411137 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927869 chr1:22927868 synonymous SNV . 0 20 hm7G_associated_SNPs_21976 0 0 0 0 2 EPHA8 chr1:22927793 3'AG 22927793 Downstream 76bp 20370 chr1 22927868 22927868 1 + G T LUAD 22927869 + 22927849 22927889 41 GCGGTGGGGGCCTCACCGTGGGGGACTGGCTGGACTCCATC GCGGTGGGGGCCTCACCGTTGGGGACTGGCTGGACTCCATC < 41bp 0.392106674294888 0.743850998205569 NA NA prediction 0.487701996411137 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927869 chr1:22927868 synonymous SNV . 0 20 hm7G_associated_SNPs_21976 0 0 0 0 2 EPHA8 chr1:22927966 5'GT 22927966 Upstream 99bp 20371 chr3 114014640 114014640 1 + G T READ 114014641 + 114014621 114014661 41 GCTGACCGTGAACGATACAGGGGAGTACTTCTGCATCTATC GCTGACCGTGAACGATACATGGGAGTACTTCTGCATCTATC < 41bp 0.411058747976491 0.743832720291198 NA NA prediction 0.487665440582397 Functional Gain - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114014641 chr3:114014640 nonsynonymous SNV 0.332 4 20 hm7G_associated_SNPs_21978 0 0 0 0 1 TIGIT chr3:114014721 5'GT 114014721 Upstream 82bp 20372 chr1 55307294 55307294 1 + G T GBM 55307295 + 55307275 55307315 41 AATCCCATCCTTAGAATCAGGCTGTTTTGTTGGAAAGGCCT AATCCCATCCTTAGAATCATGCTGTTTTGTTGGAAAGGCCT < 41bp 0.425893790991041 0.743800250889778 NA NA prediction 0.487600501779555 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55307295 chr1:55307294 nonsynonymous SNV 0.296 1 20 hm7G_associated_SNPs_21979 0 0 0 0 2 LEXM chr1:55307289 3'AG 55307289 Downstream 6bp 20373 chr1 55307294 55307294 1 + G T GBM 55307295 + 55307275 55307315 41 AATCCCATCCTTAGAATCAGGCTGTTTTGTTGGAAAGGCCT AATCCCATCCTTAGAATCATGCTGTTTTGTTGGAAAGGCCT < 41bp 0.425893790991041 0.743800250889778 NA NA prediction 0.487600501779555 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55307295 chr1:55307294 nonsynonymous SNV 0.296 1 20 hm7G_associated_SNPs_21979 0 0 0 0 2 LEXM chr1:55307375 5'GT 55307375 Upstream 82bp 20374 chr1 24661135 24661135 1 + G T GBM 24661136 + 24661116 24661156 41 TTCCTTTCTCTCTTCTCAGGGTCCCAAGGAGAAGCGGATAT TTCCTTTCTCTCTTCTCAGTGTCCCAAGGAGAAGCGGATAT < 41bp 0.425381713511956 0.743792812439429 NA NA prediction 0.487585624878858 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24661136 chr1:24661135 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_21981 0 0 0 0 2 GRHL3 chr1:24661135 5'GT 24661135 Upstream 1bp 20375 chr1 24661135 24661135 1 + G T GBM 24661136 + 24661116 24661156 41 TTCCTTTCTCTCTTCTCAGGGTCCCAAGGAGAAGCGGATAT TTCCTTTCTCTCTTCTCAGTGTCCCAAGGAGAAGCGGATAT < 41bp 0.425381713511956 0.743792812439429 NA NA prediction 0.487585624878858 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24661136 chr1:24661135 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_21981 0 0 0 0 2 GRHL3 chr1:24661196 5'GT 24661196 Upstream 62bp 20376 chr17 15644512 15644512 1 + G T UCEC 15644513 + 15644493 15644533 41 CCAGAGGAAGATGCTTTCTGGGCGCTTACCCAGTTGCTCGC CCAGAGGAAGATGCTTTCTTGGCGCTTACCCAGTTGCTCGC < 41bp 0.395190297981911 0.743788965501239 NA NA prediction 0.487577931002477 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644513 chr17:15644512 nonsynonymous SNV 0.020 0 20 hm7G_associated_SNPs_21982 0 0 0 0 2 TBC1D26 chr17:15644436 3'AG 15644436 Downstream 77bp 20377 chr17 15644512 15644512 1 + G T UCEC 15644513 + 15644493 15644533 41 CCAGAGGAAGATGCTTTCTGGGCGCTTACCCAGTTGCTCGC CCAGAGGAAGATGCTTTCTTGGCGCTTACCCAGTTGCTCGC < 41bp 0.395190297981911 0.743788965501239 NA NA prediction 0.487577931002477 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644513 chr17:15644512 nonsynonymous SNV 0.020 0 20 hm7G_associated_SNPs_21982 0 0 0 0 2 TBC1D26 chr17:15644555 5'GT 15644555 Upstream 44bp 20378 chr17 18923500 18923500 1 + G T SARC 18923501 + 18923481 18923521 41 CCTGGTGGACCCTGGCTCAGGATGTGCCCTTGGGAACTAAA CCTGGTGGACCCTGGCTCATGATGTGCCCTTGGGAACTAAA < 41bp 0.401858734564455 0.74377405107328 NA NA prediction 0.48754810214656 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18923501 chr17:18923500 nonsynonymous SNV 0.074 1 20 hm7G_associated_SNPs_21983 0 0 0 0 2 SLC5A10 chr17:18923468 3'AG 18923468 Downstream 33bp 20379 chr17 18923500 18923500 1 + G T SARC 18923501 + 18923481 18923521 41 CCTGGTGGACCCTGGCTCAGGATGTGCCCTTGGGAACTAAA CCTGGTGGACCCTGGCTCATGATGTGCCCTTGGGAACTAAA < 41bp 0.401858734564455 0.74377405107328 NA NA prediction 0.48754810214656 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18923501 chr17:18923500 nonsynonymous SNV 0.074 1 20 hm7G_associated_SNPs_21983 0 0 0 0 2 SLC5A10 chr17:18923525 5'GT 18923525 Upstream 26bp 20380 chr13 43180710 43180710 1 + G T LUAD 43180711 + 43180691 43180731 41 CAACATGACTTTTAGCAATGGAAAACTAATAGTTAATCAGG CAACATGACTTTTAGCAATTGAAAACTAATAGTTAATCAGG < 41bp 0.612848277005534 0.856594003297367 NA NA prediction 0.487491452583664 Functional Gain - TNFSF11 ENSG00000120659 CDS Human protein_coding chr13:43180711 chr13:43180710 stopgain 0.948 1 20 hm7G_associated_SNPs_21987 0 0 0 0 1 TNFSF11 chr13:43180633 3'AG 43180633 Downstream 78bp 20381 chrX 153046776 153046776 1 + G T STAD 153046777 + 153046757 153046797 41 GCTCCGACGACGAGGAACAGGAAGACCCCAAAGACTACTGC GCTCCGACGACGAGGAACATGAAGACCCCAAAGACTACTGC < 41bp 0.397811977242276 0.743739000623134 NA NA prediction 0.487478001246268 Functional Gain - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153046777 chrX:153046776 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_21989 0 0 0 0 1 SRPK3 chrX:153046738 3'AG 153046738 Downstream 39bp 20382 chr16 67917910 67917910 1 + G T LUAD 67917911 + 67917891 67917931 41 ACAGTGACCCCATCACTCGGGACCACATGGGCTCCGTTATG ACAGTGACCCCATCACTCGTGACCACATGGGCTCCGTTATG < 41bp 0.412327589497 0.74373094121478 NA NA prediction 0.48746188242956 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67917911 chr16:67917910 synonymous SNV . 0 20 hm7G_associated_SNPs_21990 0 0 1 0 1 EDC4 chr16:67917859 3'AG 67917859 Downstream 52bp 20383 chr4 8221096 8221096 1 + G T SKCM 8221097 + 8221077 8221117 41 CGGCATTGGCAGACTTCCAGGGCTCGGGGCCCGAAGAGATG CGGCATTGGCAGACTTCCATGGCTCGGGGCCCGAAGAGATG < 41bp 0.384043893465551 0.743727958871759 NA NA prediction 0.487455917743519 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8221097 chr4:8221096 nonsynonymous SNV 0.612 1 20 hm7G_associated_SNPs_21991 0 0 1 0 1 SH3TC1 chr4:8221062 3'AG 8221062 Downstream 35bp 20384 chr22 39388109 39388109 1 + G T rs181180569 39388110 + 39388090 39388130 41 AGCCCTGGGATGGACTAGAGGAGCACAGCCAAGCCCTGAGT AGCCCTGGGATGGACTAGATGAGCACAGCCAAGCCCTGAGT < 41bp 0.416193444766383 0.743712661155208 NA NA prediction 0.487425322310417 Functional Gain - APOBEC3B ENSG00000179750 CDS Human protein_coding chr22:39388110 chr22:39388109 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_21995 0 0 0 0 1 APOBEC3B chr22:39388154 5'GT 39388154 Upstream 46bp 20385 chr6 117241534 117241534 1 + G T UCEC 117241535 + 117241515 117241555 41 ATGGTGTCTGATATTGAAAGGGTTGATTTGAACAGCATTGG ATGGTGTCTGATATTGAAATGGTTGATTTGAACAGCATTGG < 41bp 0.635147045290345 0.878808073644649 NA NA prediction 0.487322056708607 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117241535 chr6:117241534 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22002 0 0 0 0 2 RFX6 chr6:117241473 3'AG 117241473 Downstream 62bp 20386 chr6 117241534 117241534 1 + G T UCEC 117241535 + 117241515 117241555 41 ATGGTGTCTGATATTGAAAGGGTTGATTTGAACAGCATTGG ATGGTGTCTGATATTGAAATGGTTGATTTGAACAGCATTGG < 41bp 0.635147045290345 0.878808073644649 NA NA prediction 0.487322056708607 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117241535 chr6:117241534 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22002 0 0 0 0 2 RFX6 chr6:117241617 5'GT 117241617 Upstream 84bp 20387 chr5 43613218 43613218 1 + G T OV 43613219 + 43613199 43613239 41 AAGGGGCAAAGGAAGTGCTGGCTTCTGATTTGGTGGTCAAA AAGGGGCAAAGGAAGTGCTTGCTTCTGATTTGGTGGTCAAA < 41bp 0.640101299317366 0.883747201343401 NA NA prediction 0.48729180405207 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43613219 chr5:43613218 synonymous SNV . 0 20 hm7G_associated_SNPs_22003 0 0 1 0 1 NNT chr5:43613239 5'GT 43613239 Upstream 22bp 20388 chr12 247572 247572 1 - C A SKCM 247571 - 247551 247591 41 GCGCAGGGAGATCCGCCGTGGCAGGCGGCTCTCCAGAAGCG GCGCAGGGAGATCCGCCGTTGCAGGCGGCTCTCCAGAAGCG < 41bp 0.643246784309205 0.886890600684575 NA NA prediction 0.48728763275074 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247571 chr12:247572 nonsynonymous SNV 0.960 4 20 hm7G_associated_SNPs_22004 0 0 0 0 1 IQSEC3 chr12:247618 3'AG 247618 Downstream 47bp 20389 chr2 71148364 71148364 1 + G T LUAD 71148365 + 71148345 71148385 41 AGCGCTGCCAGTATGTGGTGGGCCGCGAGCGCACTGAGCTG AGCGCTGCCAGTATGTGGTTGGCCGCGAGCGCACTGAGCTG < 41bp 0.633256264979342 0.876891832483123 NA NA prediction 0.487271135007562 Functional Gain - VAX2 ENSG00000116035 CDS Human protein_coding chr2:71148365 chr2:71148364 synonymous SNV . 0 20 hm7G_associated_SNPs_22005 0 0 0 0 1 VAX2 chr2:71148415 5'GT 71148415 Upstream 52bp 20390 chr19 7710172 7710172 1 + G T UCEC 7710173 + 7710153 7710193 41 TAACCTGGAGCAGCTGGGAGGCACTGTCACCAACCCCGGGG TAACCTGGAGCAGCTGGGATGCACTGTCACCAACCCCGGGG < 41bp 0.396317687739528 0.743631424402217 NA NA prediction 0.487262848804435 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7710173 chr19:7710172 nonsynonymous SNV 0.979 0 20 hm7G_associated_SNPs_22006 0 0 1 0 2 STXBP2 chr19:7710083 3'AG 7710083 Downstream 90bp 20391 chr19 7710172 7710172 1 + G T UCEC 7710173 + 7710153 7710193 41 TAACCTGGAGCAGCTGGGAGGCACTGTCACCAACCCCGGGG TAACCTGGAGCAGCTGGGATGCACTGTCACCAACCCCGGGG < 41bp 0.396317687739528 0.743631424402217 NA NA prediction 0.487262848804435 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7710173 chr19:7710172 nonsynonymous SNV 0.979 0 20 hm7G_associated_SNPs_22006 0 0 1 0 2 STXBP2 chr19:7710192 5'GT 7710192 Upstream 21bp 20392 chr1 12837211 12837211 1 + G T LUAD 12837212 + 12837192 12837232 41 AATGCCTGCTGTCAGAGTCGGACCTGAAGCATCTCTCTTGG AATGCCTGCTGTCAGAGTCTGACCTGAAGCATCTCTCTTGG < 41bp 0.43555367411554 0.743618397760511 NA NA prediction 0.487236795521022 Functional Gain - PRAMEF12 ENSG00000116726 CDS Human protein_coding chr1:12837212 chr1:12837211 synonymous SNV . 0 20 hm7G_associated_SNPs_22008 0 0 0 0 1 PRAMEF12 chr1:12837154 3'AG 12837154 Downstream 58bp 20393 chr11 47297486 47297486 1 + G T LIHC 47297487 + 47297467 47297507 41 TCTTTACTGGATCGCTGCTGGTAGAGGAGAAGTCAAGTGCC TCTTTACTGGATCGCTGCTTGTAGAGGAGAAGTCAAGTGCC < 41bp 0.628543396712208 0.872151892361195 NA NA prediction 0.487216991297973 Functional Gain - MADD ENSG00000110514 CDS Human protein_coding chr11:47297487 chr11:47297486 synonymous SNV . 0 20 hm7G_associated_SNPs_22009 0 0 1 0 1 MADD chr11:47297450 3'AG 47297450 Downstream 37bp 20394 chr11 134238539 134238539 1 + G T PAAD 134238540 + 134238520 134238560 41 TTCTCCCTCCTCCGGCAGAGGTTTTGAAAACCGTGTCTGCC TTCTCCCTCCTCCGGCAGATGTTTTGAAAACCGTGTCTGCC < 41bp 0.420839714254809 0.743585711660125 NA NA prediction 0.48717142332025 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134238540 chr11:134238539 nonsynonymous SNV 0.139 2 20 hm7G_associated_SNPs_22012 0 0 1 0 1 GLB1L2 chr11:134238538 3'AG 134238538 Downstream 2bp 20395 chr4 119810232 119810232 1 + G T LUAD 119810233 + 119810213 119810253 41 TGCATTTCCATGACTGGAGGGGCGCCCTGGGGGTTCAGATT TGCATTTCCATGACTGGAGTGGCGCCCTGGGGGTTCAGATT < 41bp 0.423182911407758 0.743582630460709 NA NA prediction 0.487165260921419 Functional Gain - SYNPO2 ENSG00000172403 CDS Human protein_coding chr4:119810233 chr4:119810232 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_22013 0 0 0 0 1 SYNPO2 chr4:119810296 5'GT 119810296 Upstream 65bp 20396 chr19 1271446 1271446 1 + G T SARC 1271447 + 1271427 1271467 41 TTCCGTGGGGGCCGAGGACGGGGCCGTGGGTTCTCTAGAGG TTCCGTGGGGGCCGAGGACTGGGCCGTGGGTTCTCTAGAGG < 41bp 0.401529229497179 0.743580990637806 NA NA prediction 0.487161981275612 Functional Gain - CIRBP ENSG00000099622 CDS Human protein_coding chr19:1271447 chr19:1271446 nonsynonymous SNV 0.431 1 20 hm7G_associated_SNPs_22014 0 0 1 0 1 CIRBP chr19:1271466 5'GT 1271466 Upstream 21bp 20397 chr8 17478654 17478654 1 + G T LUSC 17478655 + 17478635 17478675 41 CTGGGTGCAGCTCTGCAGCGGCTACATCTGCAGGAAGGACG CTGGGTGCAGCTCTGCAGCTGCTACATCTGCAGGAAGGACG < 41bp 0.649129516258602 0.892709652779405 NA NA prediction 0.487160273041606 Functional Gain - PDGFRL ENSG00000104213 CDS Human protein_coding chr8:17478655 chr8:17478654 nonsynonymous SNV 0.543 4 20 hm7G_associated_SNPs_22015 0 0 0 0 1 PDGFRL chr8:17478711 5'GT 17478711 Upstream 58bp 20398 chr22 51237100 51237100 1 + G T UCEC 51237101 + 51237081 51237121 41 AGATGGCACCAAAAGCGAAGGAAGCTCCTGCTCATCCTAAA AGATGGCACCAAAAGCGAATGAAGCTCCTGCTCATCCTAAA < 41bp 0.440878287103401 0.743573630367315 NA NA prediction 0.487147260734629 Functional Gain - RPL23AP82 ENSG00000184319 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:51237101 chr22:51237100 . . 0 20 hm7G_associated_SNPs_22016 0 0 0 2 1 RPL23AP82 chr22:51237083 3'AG 51237083 Downstream 18bp 20399 chr19 3905458 3905458 1 + G T BLCA 3905459 + 3905439 3905479 41 CAACACGCTAAATTTCAACGGAGCGCATCGTAAGAGGAAGA CAACACGCTAAATTTCAACTGAGCGCATCGTAAGAGGAAGA < 41bp 0.402800885563825 0.743564484527614 NA NA prediction 0.487128969055227 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3905459 chr19:3905458 stopgain 0.004 0 20 hm7G_associated_SNPs_22017 0 0 1 0 1 ATCAY chr19:3905432 3'AG 3905432 Downstream 27bp 20400 chrX 14550449 14550449 1 + G T LUSC 14550450 + 14550430 14550470 41 TTTCTTGGACAAGTTAATGGGAAGGACATCAGGATATGATG TTTCTTGGACAAGTTAATGTGAAGGACATCAGGATATGATG < 41bp 0.424640000020338 0.743543272944416 NA NA prediction 0.487086545888831 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550450 chrX:14550449 stopgain 1.000 1 20 hm7G_associated_SNPs_22018 0 0 0 0 2 GLRA2 chrX:14550361 3'AG 14550361 Downstream 89bp 20401 chrX 14550449 14550449 1 + G T LUSC 14550450 + 14550430 14550470 41 TTTCTTGGACAAGTTAATGGGAAGGACATCAGGATATGATG TTTCTTGGACAAGTTAATGTGAAGGACATCAGGATATGATG < 41bp 0.424640000020338 0.743543272944416 NA NA prediction 0.487086545888831 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550450 chrX:14550449 stopgain 1.000 1 20 hm7G_associated_SNPs_22018 0 0 0 0 2 GLRA2 chrX:14550494 5'GT 14550494 Upstream 46bp 20402 chr20 1285570 1285570 1 + G T UCEC 1285571 + 1285551 1285591 41 AGCTGTCACGCATGCAGGAGGACTGGATTGAGGAGGAGTGC AGCTGTCACGCATGCAGGATGACTGGATTGAGGAGGAGTGC < 41bp 0.632078103550343 0.875596185517373 NA NA prediction 0.48703616393406 Functional Gain - SNPH ENSG00000101298 CDS Human protein_coding chr20:1285571 chr20:1285570 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22020 0 0 0 0 1 SNPH chr20:1285522 3'AG 1285522 Downstream 49bp 20403 chr8 30332327 30332327 1 + G T LUAD 30332328 + 30332308 30332348 41 TTGTCAGTGGCCTTCCTCTGGATATCAAACCTCGGGAGCTC TTGTCAGTGGCCTTCCTCTTGATATCAAACCTCGGGAGCTC < 41bp 0.398306936963175 0.743512386285441 NA NA prediction 0.487024772570882 Functional Gain - RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332328 chr8:30332327 synonymous SNV . 0 20 hm7G_associated_SNPs_22021 0 0 1 0 2 RBPMS chr8:30332295 3'AG 30332295 Downstream 33bp 20404 chr8 30332327 30332327 1 + G T LUAD 30332328 + 30332308 30332348 41 TTGTCAGTGGCCTTCCTCTGGATATCAAACCTCGGGAGCTC TTGTCAGTGGCCTTCCTCTTGATATCAAACCTCGGGAGCTC < 41bp 0.398306936963175 0.743512386285441 NA NA prediction 0.487024772570882 Functional Gain - RBPMS ENSG00000157110 CDS Human protein_coding chr8:30332328 chr8:30332327 synonymous SNV . 0 20 hm7G_associated_SNPs_22021 0 0 1 0 2 RBPMS chr8:30332372 5'GT 30332372 Upstream 46bp 20405 chr11 111796699 111796699 1 + G T STAD 111796700 + 111796680 111796720 41 GCAGGGCCATGAAACAACAGGACATACGTATGAACGGGTGT GCAGGGCCATGAAACAACATGACATACGTATGAACGGGTGT < 41bp 0.43205741559331 0.743472977200565 NA NA prediction 0.48694595440113 Functional Gain - C11orf52 ENSG00000149300 CDS Human protein_coding chr11:111796700 chr11:111796699 stopgain 0.023 0 20 hm7G_associated_SNPs_22025 0 0 0 0 1 C11orf52 chr11:111796684 3'AG 111796684 Downstream 16bp 20406 chr3 50255426 50255426 1 + G T LUSC 50255427 + 50255407 50255447 41 CCATCTATACTGAGCTCAAGGAGTAGGTGTCTGTGGCTGGG CCATCTATACTGAGCTCAATGAGTAGGTGTCTGTGGCTGGG < 41bp 0.616007601845063 0.859478489459959 NA NA prediction 0.486941775229792 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255427 chr3:50255426 . 1.000 0 20 hm7G_associated_SNPs_22026 0 0 1 0 2 SLC38A3 chr3:50255349 3'AG 50255349 Downstream 78bp 20407 chr3 50255426 50255426 1 + G T LUSC 50255427 + 50255407 50255447 41 CCATCTATACTGAGCTCAAGGAGTAGGTGTCTGTGGCTGGG CCATCTATACTGAGCTCAATGAGTAGGTGTCTGTGGCTGGG < 41bp 0.616007601845063 0.859478489459959 NA NA prediction 0.486941775229792 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50255427 chr3:50255426 . 1.000 0 20 hm7G_associated_SNPs_22026 0 0 1 0 2 SLC38A3 chr3:50255428 5'GT 50255428 Upstream 3bp 20408 chr1 156554719 156554719 1 + G T LUAD 156554720 + 156554700 156554740 41 GTGGGGCCAGCCAGGCGGAGGGGACCCCAGCAAAGGCAGGA GTGGGGCCAGCCAGGCGGATGGGACCCCAGCAAAGGCAGGA < 41bp 0.396630689833296 0.743460700638147 NA NA prediction 0.486921401276295 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156554720 chr1:156554719 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_22027 0 0 0 0 2 TTC24 chr1:156554669 3'AG 156554669 Downstream 51bp 20409 chr1 156554719 156554719 1 + G T LUAD 156554720 + 156554700 156554740 41 GTGGGGCCAGCCAGGCGGAGGGGACCCCAGCAAAGGCAGGA GTGGGGCCAGCCAGGCGGATGGGACCCCAGCAAAGGCAGGA < 41bp 0.396630689833296 0.743460700638147 NA NA prediction 0.486921401276295 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156554720 chr1:156554719 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_22027 0 0 0 0 2 TTC24 chr1:156554766 5'GT 156554766 Upstream 48bp 20410 chr9 117053135 117053135 1 + G T KIRC 117053136 + 117053116 117053156 41 TGGCCCCATGGGCCCTGCTGGGAAGAGAGGAAATCCAGGTG TGGCCCCATGGGCCCTGCTTGGAAGAGAGGAAATCCAGGTG < 41bp 0.402345278856438 0.743439692024534 NA NA prediction 0.486879384049069 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117053136 chr9:117053135 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22029 0 0 1 0 2 COL27A1 chr9:117053090 3'AG 117053090 Downstream 46bp 20411 chr9 117053135 117053135 1 + G T KIRC 117053136 + 117053116 117053156 41 TGGCCCCATGGGCCCTGCTGGGAAGAGAGGAAATCCAGGTG TGGCCCCATGGGCCCTGCTTGGAAGAGAGGAAATCCAGGTG < 41bp 0.402345278856438 0.743439692024534 NA NA prediction 0.486879384049069 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117053136 chr9:117053135 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22029 0 0 1 0 2 COL27A1 chr9:117053197 5'GT 117053197 Upstream 63bp 20412 chr12 6969555 6969555 1 + G T UCEC 6969556 + 6969536 6969576 41 CAAGATGGCATTGCCCCTCGGATGTTCAAGGCCCTCATCGG CAAGATGGCATTGCCCCTCTGATGTTCAAGGCCCTCATCGG < 41bp 0.64346615474769 0.886884630330719 NA NA prediction 0.486836951166057 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6969556 chr12:6969555 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22030 0 0 1 0 1 USP5 chr12:6969530 3'AG 6969530 Downstream 26bp 20413 chr11 380842 380842 1 + G T UCEC 380843 + 380823 380863 41 AGGTTACTGGGAGGTGAACGGCTTTGGCCTTTTTGGGATCT AGGTTACTGGGAGGTGAACTGCTTTGGCCTTTTTGGGATCT < 41bp 0.635525265429132 0.878939850231158 NA NA prediction 0.486829169604052 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:380843 chr11:380842 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_22031 0 0 1 0 1 B4GALNT4 chr11:380825 3'AG 380825 Downstream 18bp 20414 chr9 90462151 90462151 1 + G T SARC 90462152 + 90462132 90462172 41 TTCAGCTGGGGTAAAAACTGGGGCATGGATGGCTACATAAA TTCAGCTGGGGTAAAAACTTGGGCATGGATGGCTACATAAA < 41bp 0.581527627453554 0.824942082581466 NA NA prediction 0.486828910255825 Functional Gain - CTSLP8 ENSG00000234575 ncRNA_exonic Human unprocessed_pseudogene chr9:90462152 chr9:90462151 . . 0 20 hm7G_associated_SNPs_22032 0 0 0 0 1 CTSLP8 chr9:90462137 3'AG 90462137 Downstream 15bp 20415 chr1 203809456 203809456 1 + G T LUAD 203809457 + 203809437 203809477 41 AAGTTTCCAAGTCTCTTAAGGAGCGATTAGGCATGTCAGCT AAGTTTCCAAGTCTCTTAATGAGCGATTAGGCATGTCAGCT < 41bp 0.427561699129937 0.74339338081621 NA NA prediction 0.486786761632419 Functional Gain - ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203809457 chr1:203809456 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22033 0 0 1 0 2 ZC3H11A chr1:203809434 3'AG 203809434 Downstream 23bp 20416 chr1 203809456 203809456 1 + G T LUAD 203809457 + 203809437 203809477 41 AAGTTTCCAAGTCTCTTAAGGAGCGATTAGGCATGTCAGCT AAGTTTCCAAGTCTCTTAATGAGCGATTAGGCATGTCAGCT < 41bp 0.427561699129937 0.74339338081621 NA NA prediction 0.486786761632419 Functional Gain - ZC3H11A ENSG00000058673 CDS Human protein_coding chr1:203809457 chr1:203809456 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22033 0 0 1 0 2 ZC3H11A chr1:203809502 5'GT 203809502 Upstream 47bp 20417 chr17 1650347 1650347 1 + G T STAD 1650348 + 1650328 1650368 41 CGTTGCAGAGGCTGCAACAGGTGCTGCACGCAGGCTCAGGG CGTTGCAGAGGCTGCAACATGTGCTGCACGCAGGCTCAGGG < 41bp 0.399798049741289 0.743390076228187 NA NA prediction 0.486780152456374 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1650348 chr17:1650347 nonsynonymous SNV 0.033 0 20 hm7G_associated_SNPs_22035 0 0 0 0 1 SERPINF2 chr17:1650313 3'AG 1650313 Downstream 35bp 20418 chr21 43710225 43710225 1 + G T KIRP 43710226 + 43710206 43710246 41 TCATTGGCCTGCTGTACTTGGGGATCGGGAACGAAGCCAAG TCATTGGCCTGCTGTACTTTGGGATCGGGAACGAAGCCAAG < 41bp 0.651078705989295 0.894445465488996 NA NA prediction 0.486733518999404 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43710226 chr21:43710225 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22036 0 0 0 0 1 ABCG1 chr21:43710160 3'AG 43710160 Downstream 66bp 20419 chr16 31309152 31309152 1 + G T LUAD 31309153 + 31309133 31309173 41 CAGCCCTAACAGTGCTGGGGGACGTAAATGGGGACAAGCTG CAGCCCTAACAGTGCTGGGTGACGTAAATGGGGACAAGCTG < 41bp 0.393213568162657 0.743332210107357 NA NA prediction 0.486664420214714 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309153 chr16:31309152 synonymous SNV . 0 20 hm7G_associated_SNPs_22038 0 0 0 0 2 ITGAM chr16:31309063 3'AG 31309063 Downstream 90bp 20420 chr16 31309152 31309152 1 + G T LUAD 31309153 + 31309133 31309173 41 CAGCCCTAACAGTGCTGGGGGACGTAAATGGGGACAAGCTG CAGCCCTAACAGTGCTGGGTGACGTAAATGGGGACAAGCTG < 41bp 0.393213568162657 0.743332210107357 NA NA prediction 0.486664420214714 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309153 chr16:31309152 synonymous SNV . 0 20 hm7G_associated_SNPs_22038 0 0 0 0 2 ITGAM chr16:31309066 3'AG 31309066 Downstream 87bp 20421 chr9 133570879 133570879 1 + G T COAD 133570880 + 133570860 133570900 41 TATCTTCGCCTTGCATCAGGGGCCATGGAACGTATATGGGA TATCTTCGCCTTGCATCAGTGGCCATGGAACGTATATGGGA < 41bp 0.629841862913301 0.873172425054186 NA NA prediction 0.486661124281769 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133570880 chr9:133570879 synonymous SNV . 0 20 hm7G_associated_SNPs_22040 0 0 1 0 1 EXOSC2 chr9:133570879 3'AG 133570879 Downstream 1bp 20422 chr1 211451523 211451523 1 + G T STAD 211451524 + 211451504 211451544 41 TGGAAAAAAACTCGCTCTAGGACAAGTTTGATGGATCGCCA TGGAAAAAAACTCGCTCTATGACAAGTTTGATGGATCGCCA < 41bp 0.620068410954374 0.863387056088988 NA NA prediction 0.486637290269229 Functional Gain - RCOR3 ENSG00000117625 CDS Human protein_coding chr1:211451524 chr1:211451523 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_22043 0 0 1 0 2 RCOR3 chr1:211451459 3'AG 211451459 Downstream 65bp 20423 chr1 211451523 211451523 1 + G T STAD 211451524 + 211451504 211451544 41 TGGAAAAAAACTCGCTCTAGGACAAGTTTGATGGATCGCCA TGGAAAAAAACTCGCTCTATGACAAGTTTGATGGATCGCCA < 41bp 0.620068410954374 0.863387056088988 NA NA prediction 0.486637290269229 Functional Gain - RCOR3 ENSG00000117625 CDS Human protein_coding chr1:211451524 chr1:211451523 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_22043 0 0 1 0 2 RCOR3 chr1:211451583 5'GT 211451583 Upstream 61bp 20424 chr16 57756927 57756927 1 + G T UCEC 57756928 + 57756908 57756948 41 CCACAGGTACCAATATTTTGGAGATAAAGGAGTGGTACCAG CCACAGGTACCAATATTTTTGAGATAAAGGAGTGGTACCAG < 41bp 0.632424698934214 0.87574170956264 NA NA prediction 0.486634021256853 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57756928 chr16:57756927 nonsynonymous SNV 0.672 1 20 hm7G_associated_SNPs_22044 0 0 0 0 1 DRC7 chr16:57756914 3'AG 57756914 Downstream 14bp 20425 chr5 137368490 137368490 1 - C A rs117777211 137368489 - 137368469 137368509 41 GCGGCCGCGGCCAGGGAACGGGGCATCGCGGTTCCAACGGT GCGGCCGCGGCCAGGGAACTGGGCATCGCGGTTCCAACGGT < 41bp 0.547205580959975 0.790490276769677 NA NA prediction 0.486569391619403 Functional Gain - LOC100130172 ENSG00000246323 ncRNA_exonic Human antisense chr5:137368489 chr5:137368490 . . 0 20 hm7G_associated_SNPs_22048 0 0 1 0 1 LOC100130172 chr5:137368471 5'GT 137368471 Upstream 20bp 20426 chr1 207956674 207956674 1 + G T CHOL 207956675 + 207956655 207956695 41 AAGGAATACTTGACAGTTTGGGTTGGTATAGCTATCATGAC AAGGAATACTTGACAGTTTTGGTTGGTATAGCTATCATGAC < 41bp 0.444744117396401 0.743278723340762 NA NA prediction 0.486557446681525 Functional Gain - CD46 ENSG00000117335 CDS Human protein_coding chr1:207956675 chr1:207956674 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_22049 0 0 1 0 2 CD46 chr1:207956637 3'AG 207956637 Downstream 38bp 20427 chr1 207956674 207956674 1 + G T CHOL 207956675 + 207956655 207956695 41 AAGGAATACTTGACAGTTTGGGTTGGTATAGCTATCATGAC AAGGAATACTTGACAGTTTTGGTTGGTATAGCTATCATGAC < 41bp 0.444744117396401 0.743278723340762 NA NA prediction 0.486557446681525 Functional Gain - CD46 ENSG00000117335 CDS Human protein_coding chr1:207956675 chr1:207956674 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_22049 0 0 1 0 2 CD46 chr1:207956675 5'GT 207956675 Upstream 2bp 20428 chr6 31584639 31584639 1 + G T STAD 31584640 + 31584620 31584660 41 AGAAAAGGAAAAGCCAACAGGCCCCCCAGCCAAGAAAGCTA AGAAAAGGAAAAGCCAACATGCCCCCCAGCCAAGAAAGCTA < 41bp 0.518102606028518 0.761370516303544 NA NA prediction 0.486535820550052 Functional Gain - AIF1 ENSG00000204472 CDS Human protein_coding chr6:31584640 chr6:31584639 nonsynonymous SNV 0.731 2 20 hm7G_associated_SNPs_22050 0 0 0 0 1 AIF1 chr6:31584593 3'AG 31584593 Downstream 47bp 20429 chr18 199242 199242 1 + G T GBM 199243 + 199223 199263 41 AGAAGAAGAAGTCACCAAAGGAAAGGAAAATCAACTTCAGC AGAAGAAGAAGTCACCAAATGAAAGGAAAATCAACTTCAGC < 41bp 0.623480126179776 0.86673796073206 NA NA prediction 0.486515669104568 Functional Gain - USP14 ENSG00000101557 CDS Human protein_coding chr18:199243 chr18:199242 stopgain 1.000 1 20 hm7G_associated_SNPs_22052 0 0 1 0 2 USP14 chr18:199202 3'AG 199202 Downstream 41bp 20430 chr18 199242 199242 1 + G T GBM 199243 + 199223 199263 41 AGAAGAAGAAGTCACCAAAGGAAAGGAAAATCAACTTCAGC AGAAGAAGAAGTCACCAAATGAAAGGAAAATCAACTTCAGC < 41bp 0.623480126179776 0.86673796073206 NA NA prediction 0.486515669104568 Functional Gain - USP14 ENSG00000101557 CDS Human protein_coding chr18:199243 chr18:199242 stopgain 1.000 1 20 hm7G_associated_SNPs_22052 0 0 1 0 2 USP14 chr18:199316 5'GT 199316 Upstream 75bp 20431 chr1 154295502 154295502 1 + G T LUSC 154295503 + 154295483 154295523 41 CCTGGCCATGTGCATCGTTGGACGCCTCCCCTGGGTCAAGC CCTGGCCATGTGCATCGTTTGACGCCTCCCCTGGGTCAAGC < 41bp 0.396369800724514 0.743185562667758 NA NA prediction 0.486371125335516 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295503 chr1:154295502 stopgain 0.981 1 20 hm7G_associated_SNPs_22061 0 0 0 0 2 AQP10 chr1:154295458 3'AG 154295458 Downstream 45bp 20432 chr1 154295502 154295502 1 + G T LUSC 154295503 + 154295483 154295523 41 CCTGGCCATGTGCATCGTTGGACGCCTCCCCTGGGTCAAGC CCTGGCCATGTGCATCGTTTGACGCCTCCCCTGGGTCAAGC < 41bp 0.396369800724514 0.743185562667758 NA NA prediction 0.486371125335516 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154295503 chr1:154295502 stopgain 0.981 1 20 hm7G_associated_SNPs_22061 0 0 0 0 2 AQP10 chr1:154295595 5'GT 154295595 Upstream 94bp 20433 chr11 60150733 60150733 1 + G T LUAD 60150734 + 60150714 60150754 41 GAAGATTACCTGCAGAACGGGCTGCCAACAGAAACCACCGT GAAGATTACCTGCAGAACGTGCTGCCAACAGAAACCACCGT < 41bp 0.423700223410277 0.743176538171735 NA NA prediction 0.48635307634347 Functional Gain - MS4A7 ENSG00000166927 CDS Human protein_coding chr11:60150734 chr11:60150733 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_22064 0 0 0 0 1 MS4A7 chr11:60150761 5'GT 60150761 Upstream 29bp 20434 chr1 100544103 100544103 1 + G T UCEC 100544104 + 100544084 100544124 41 CTGCTGATGCTGATCAACAGGGTGAGTTGATAGGAACTAGC CTGCTGATGCTGATCAACATGGTGAGTTGATAGGAACTAGC < 41bp 0.619249933865005 0.862406958698036 NA NA prediction 0.486314049666061 Functional Gain - MFSD14A ENSG00000156875 CDS Human protein_coding chr1:100544104 chr1:100544103 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_22068 0 0 1 0 1 MFSD14A chr1:100544007 3'AG 100544007 Downstream 97bp 20435 chrX 21619431 21619431 1 + G T BLCA 21619432 + 21619412 21619452 41 AATTAATATGCTGACTGCAGGATATGCAGAAAGAGAGAGGA AATTAATATGCTGACTGCATGATATGCAGAAAGAGAGAGGA < 41bp 0.619572713428885 0.862727819476649 NA NA prediction 0.486310212095528 Functional Gain - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21619432 chrX:21619431 stopgain 1.000 1 20 hm7G_associated_SNPs_22069 0 0 0 0 2 CNKSR2 chrX:21619400 3'AG 21619400 Downstream 32bp 20436 chrX 21619431 21619431 1 + G T BLCA 21619432 + 21619412 21619452 41 AATTAATATGCTGACTGCAGGATATGCAGAAAGAGAGAGGA AATTAATATGCTGACTGCATGATATGCAGAAAGAGAGAGGA < 41bp 0.619572713428885 0.862727819476649 NA NA prediction 0.486310212095528 Functional Gain - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21619432 chrX:21619431 stopgain 1.000 1 20 hm7G_associated_SNPs_22069 0 0 0 0 2 CNKSR2 chrX:21619467 5'GT 21619467 Upstream 37bp 20437 chr9 137774476 137774476 1 + G T UCEC 137774477 + 137774457 137774497 41 GGGAGAGGCAGGCACCAATGGAAAGAGAGGTAGGTGCAGGC GGGAGAGGCAGGCACCAATTGAAAGAGAGGTAGGTGCAGGC < 41bp 0.640645636572015 0.883783707581362 NA NA prediction 0.486276142018694 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137774477 chr9:137774476 stopgain 0.007 0 20 hm7G_associated_SNPs_22070 0 0 0 0 1 FCN2 chr9:137774485 5'GT 137774485 Upstream 10bp 20438 chr2 231906083 231906083 1 + G T UCEC 231906084 + 231906064 231906104 41 TGGGGTCCCTGGAGCCGGAGGAAGAACCAGGATGTTGCTGC TGGGGTCCCTGGAGCCGGATGAAGAACCAGGATGTTGCTGC < 41bp 0.643122124994242 0.88623657105035 NA NA prediction 0.486228892112216 Functional Gain - C2orf72 ENSG00000204128 CDS Human protein_coding chr2:231906084 chr2:231906083 nonsynonymous SNV 0.629 2 20 hm7G_associated_SNPs_22074 0 0 1 0 1 C2orf72 chr2:231906011 3'AG 231906011 Downstream 73bp 20439 chr10 27458963 27458963 1 + G T UCEC 27458964 + 27458944 27458984 41 AAATGCCATTGAGACGAAAGGTTTCAATAAAAAGGATCTGG AAATGCCATTGAGACGAAATGTTTCAATAAAAAGGATCTGG < 41bp 0.428509871063587 0.743114337793459 NA NA prediction 0.486228675586917 Functional Gain - MASTL ENSG00000120539 CDS Human protein_coding chr10:27458964 chr10:27458963 nonsynonymous SNV 0.204 1 20 hm7G_associated_SNPs_22075 0 0 1 0 1 MASTL chr10:27458873 3'AG 27458873 Downstream 91bp 20440 chr11 63978540 63978540 1 + G T LIHC 63978541 + 63978521 63978561 41 CAGGCATCCGGCACCCCGAGGAGCTGTCCCTGCTCCGGGCT CAGGCATCCGGCACCCCGATGAGCTGTCCCTGCTCCGGGCT < 41bp 0.38472297533992 0.743112915854699 NA NA prediction 0.486225831709397 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978541 chr11:63978540 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22076 0 0 1 0 1 FERMT3 chr11:63978524 3'AG 63978524 Downstream 17bp 20441 chr19 7743272 7743272 1 + G T UCEC 7743273 + 7743253 7743293 41 GAGCTGCTGGGCTTTAAAAGGGAGCTTTGGAATGGTGAGCG GAGCTGCTGGGCTTTAAAATGGAGCTTTGGAATGGTGAGCG < 41bp 0.633718530065101 0.876828442150559 NA NA prediction 0.486219824170916 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7743273 chr19:7743272 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_22077 0 0 0 0 2 MCEMP1 chr19:7743236 3'AG 7743236 Downstream 37bp 20442 chr19 7743272 7743272 1 + G T UCEC 7743273 + 7743253 7743293 41 GAGCTGCTGGGCTTTAAAAGGGAGCTTTGGAATGGTGAGCG GAGCTGCTGGGCTTTAAAATGGAGCTTTGGAATGGTGAGCG < 41bp 0.633718530065101 0.876828442150559 NA NA prediction 0.486219824170916 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7743273 chr19:7743272 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_22077 0 0 0 0 2 MCEMP1 chr19:7743286 5'GT 7743286 Upstream 15bp 20443 chr3 151535367 151535367 1 + G T LUAD 151535368 + 151535348 151535388 41 TGGTGGAGGCTGGTGCGTGGGAAGTGCTGGTAAGTGAATGC TGGTGGAGGCTGGTGCGTGTGAAGTGCTGGTAAGTGAATGC < 41bp 0.423734014590444 0.743091050584136 NA NA prediction 0.486182101168272 Functional Gain - AADAC ENSG00000114771 CDS Human protein_coding chr3:151535368 chr3:151535367 stopgain 0.976 1 20 hm7G_associated_SNPs_22078 0 0 0 0 1 AADAC chr3:151535376 5'GT 151535376 Upstream 10bp 20444 chr17 18862478 18862478 1 + G T HNSC 18862479 + 18862459 18862499 41 CCTCTTCGCCAGCAGCGAGGGCTCTGGCCTCTTCATTGGAC CCTCTTCGCCAGCAGCGAGTGCTCTGGCCTCTTCATTGGAC < 41bp 0.393368558271272 0.743071256419588 NA NA prediction 0.486142512839177 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18862479 chr17:18862478 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_22080 0 0 0 0 2 SLC5A10 chr17:18862448 3'AG 18862448 Downstream 31bp 20445 chr17 18862478 18862478 1 + G T HNSC 18862479 + 18862459 18862499 41 CCTCTTCGCCAGCAGCGAGGGCTCTGGCCTCTTCATTGGAC CCTCTTCGCCAGCAGCGAGTGCTCTGGCCTCTTCATTGGAC < 41bp 0.393368558271272 0.743071256419588 NA NA prediction 0.486142512839177 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18862479 chr17:18862478 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_22080 0 0 0 0 2 SLC5A10 chr17:18862552 5'GT 18862552 Upstream 75bp 20446 chr17 694859 694859 1 + G T STAD 694860 + 694840 694880 41 TTATCAATAATCTGGAATGGGAAACCGTGCCCAATTACCTG TTATCAATAATCTGGAATGTGAAACCGTGCCCAATTACCTG < 41bp 0.62697561482031 0.870029634156127 NA NA prediction 0.486108038671633 Functional Gain - MRM3 ENSG00000171861 CDS Human protein_coding chr17:694860 chr17:694859 nonsynonymous SNV 0.946 4 20 hm7G_associated_SNPs_22082 0 0 0 0 1 MRM3 chr17:694774 3'AG 694774 Downstream 86bp 20447 chr17 26688180 26688180 1 + G T SKCM 26688181 + 26688161 26688201 41 GGTTCTCCCCATCTCCAGCGGGTGCTAGCTGCATTGATCGT GGTTCTCCCCATCTCCAGCTGGTGCTAGCTGCATTGATCGT < 41bp 0.428371566120323 0.743040058312441 NA NA prediction 0.486080116624882 Functional Gain - TMEM199 ENSG00000244045 CDS Human protein_coding chr17:26688181 chr17:26688180 nonsynonymous SNV 0.454 2 20 hm7G_associated_SNPs_22083 0 0 0 0 1 TMEM199 chr17:26688179 3'AG 26688179 Downstream 2bp 20448 chr9 93607823 93607823 1 + G T STAD 93607824 + 93607804 93607844 41 TCCATGGAAAAATCTCTCGGGAAGAATCTGAGCAAATTGTC TCCATGGAAAAATCTCTCGTGAAGAATCTGAGCAAATTGTC < 41bp 0.398287850076497 0.743008672585408 NA NA prediction 0.486017345170817 Functional Gain - SYK ENSG00000165025 CDS Human protein_coding chr9:93607824 chr9:93607823 synonymous SNV . 0 20 hm7G_associated_SNPs_22084 0 0 0 0 1 SYK chr9:93607876 5'GT 93607876 Upstream 54bp 20449 chr14 77705072 77705072 1 + G T UCEC 77705073 + 77705053 77705093 41 TGATCACCTATGTGCCCAAGGACATTGAAGACCCAGAACTC TGATCACCTATGTGCCCAATGACATTGAAGACCCAGAACTC < 41bp 0.396083332811511 0.74299819328613 NA NA prediction 0.48599638657226 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77705073 chr14:77705072 nonsynonymous SNV 0.107 1 20 hm7G_associated_SNPs_22085 0 0 0 0 2 TMEM63C chr14:77705037 3'AG 77705037 Downstream 36bp 20450 chr14 77705072 77705072 1 + G T UCEC 77705073 + 77705053 77705093 41 TGATCACCTATGTGCCCAAGGACATTGAAGACCCAGAACTC TGATCACCTATGTGCCCAATGACATTGAAGACCCAGAACTC < 41bp 0.396083332811511 0.74299819328613 NA NA prediction 0.48599638657226 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77705073 chr14:77705072 nonsynonymous SNV 0.107 1 20 hm7G_associated_SNPs_22085 0 0 0 0 2 TMEM63C chr14:77705110 5'GT 77705110 Upstream 39bp 20451 chr1 150305169 150305169 1 + G T LUSC 150305170 + 150305150 150305190 41 AGCAGATCAAACAGATGATGGAGGCAGCAACACGACAAATC AGCAGATCAAACAGATGATTGAGGCAGCAACACGACAAATC < 41bp 0.409597962307366 0.742981508278794 NA NA prediction 0.485963016557587 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150305170 chr1:150305169 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22089 0 0 1 0 2 PRPF3 chr1:150305155 3'AG 150305155 Downstream 15bp 20452 chr1 150305169 150305169 1 + G T LUSC 150305170 + 150305150 150305190 41 AGCAGATCAAACAGATGATGGAGGCAGCAACACGACAAATC AGCAGATCAAACAGATGATTGAGGCAGCAACACGACAAATC < 41bp 0.409597962307366 0.742981508278794 NA NA prediction 0.485963016557587 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150305170 chr1:150305169 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22089 0 0 1 0 2 PRPF3 chr1:150305238 5'GT 150305238 Upstream 70bp 20453 chr1 161089103 161089103 1 + G T THCA 161089104 + 161089084 161089124 41 GCATTTGACTTCATTGCACGGGACCCTGCAGAGACGCTACA GCATTTGACTTCATTGCACTGGACCCTGCAGAGACGCTACA < 41bp 0.647499003494902 0.890479865089595 NA NA prediction 0.485961723189386 Functional Gain - NIT1 ENSG00000158793 CDS Human protein_coding chr1:161089104 chr1:161089103 nonsynonymous SNV 0.922 1 20 hm7G_associated_SNPs_22090 0 0 1 0 1 NIT1 chr1:161089178 5'GT 161089178 Upstream 76bp 20454 chr19 50945479 50945479 1 + G T UCEC 50945480 + 50945460 50945500 41 AGCCTACCAAGTGGACAGAGGCAACAAGATCAAGTTGATGG AGCCTACCAAGTGGACAGATGCAACAAGATCAAGTTGATGG < 41bp 0.642066015807793 0.885041105667463 NA NA prediction 0.48595017971934 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50945480 chr19:50945479 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22091 0 0 0 0 2 MYBPC2 chr19:50945438 3'AG 50945438 Downstream 42bp 20455 chr19 50945479 50945479 1 + G T UCEC 50945480 + 50945460 50945500 41 AGCCTACCAAGTGGACAGAGGCAACAAGATCAAGTTGATGG AGCCTACCAAGTGGACAGATGCAACAAGATCAAGTTGATGG < 41bp 0.642066015807793 0.885041105667463 NA NA prediction 0.48595017971934 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50945480 chr19:50945479 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22091 0 0 0 0 2 MYBPC2 chr19:50945570 5'GT 50945570 Upstream 92bp 20456 chr12 7864238 7864238 1 + G T LUAD 7864239 + 7864219 7864259 41 TCACCGAAGAAAATTCCCGGGACGATTCAGGTAAGCCAGAT TCACCGAAGAAAATTCCCGTGACGATTCAGGTAAGCCAGAT < 41bp 0.439856704728857 0.742970408024255 NA NA prediction 0.485940816048511 Functional Gain - DPPA3 ENSG00000187569 CDS Human protein_coding chr12:7864239 chr12:7864238 synonymous SNV . 0 20 hm7G_associated_SNPs_22093 0 0 0 0 1 DPPA3 chr12:7864248 5'GT 7864248 Upstream 11bp 20457 chr22 31669477 31669477 1 + G T LIHC 31669478 + 31669458 31669498 41 GTGGATATCTTCTCCTTTGGGATCGTTCTCTGTGAGGTGAG GTGGATATCTTCTCCTTTGTGATCGTTCTCTGTGAGGTGAG < 41bp 0.402147808537876 0.742965114408063 NA NA prediction 0.485930228816126 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31669478 chr22:31669477 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22094 0 0 1 0 2 LIMK2 chr22:31669438 3'AG 31669438 Downstream 40bp 20458 chr22 31669477 31669477 1 + G T LIHC 31669478 + 31669458 31669498 41 GTGGATATCTTCTCCTTTGGGATCGTTCTCTGTGAGGTGAG GTGGATATCTTCTCCTTTGTGATCGTTCTCTGTGAGGTGAG < 41bp 0.402147808537876 0.742965114408063 NA NA prediction 0.485930228816126 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31669478 chr22:31669477 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22094 0 0 1 0 2 LIMK2 chr22:31669493 5'GT 31669493 Upstream 17bp 20459 chr22 25599785 25599785 1 + G T SARC 25599786 + 25599766 25599806 41 GCAGTTTGTTCTGGAGAAGGGGGATTATCCTCGCTGGGATG GCAGTTTGTTCTGGAGAAGTGGGATTATCCTCGCTGGGATG < 41bp 0.64451207258552 0.887472227274327 NA NA prediction 0.485920309377615 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25599786 chr22:25599785 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_22095 0 0 0 0 2 CRYBB3 chr22:25599730 3'AG 25599730 Downstream 56bp 20460 chr22 25599785 25599785 1 + G T SARC 25599786 + 25599766 25599806 41 GCAGTTTGTTCTGGAGAAGGGGGATTATCCTCGCTGGGATG GCAGTTTGTTCTGGAGAAGTGGGATTATCCTCGCTGGGATG < 41bp 0.64451207258552 0.887472227274327 NA NA prediction 0.485920309377615 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25599786 chr22:25599785 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_22095 0 0 0 0 2 CRYBB3 chr22:25599862 5'GT 25599862 Upstream 78bp 20461 chr10 69647239 69647239 1 + G T LAML 69647240 + 69647220 69647260 41 CCTGTGAAAGTGATGAGGAGGATAGAGCCTCACATGCAAGC CCTGTGAAAGTGATGAGGATGATAGAGCCTCACATGCAAGC < 41bp 0.634064777038738 0.877016571632403 NA NA prediction 0.48590358918733 Functional Gain - SIRT1 ENSG00000096717 CDS Human protein_coding chr10:69647240 chr10:69647239 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_22096 0 0 1 0 2 SIRT1 chr10:69647175 3'AG 69647175 Downstream 65bp 20462 chr10 69647239 69647239 1 + G T LAML 69647240 + 69647220 69647260 41 CCTGTGAAAGTGATGAGGAGGATAGAGCCTCACATGCAAGC CCTGTGAAAGTGATGAGGATGATAGAGCCTCACATGCAAGC < 41bp 0.634064777038738 0.877016571632403 NA NA prediction 0.48590358918733 Functional Gain - SIRT1 ENSG00000096717 CDS Human protein_coding chr10:69647240 chr10:69647239 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_22096 0 0 1 0 2 SIRT1 chr10:69647291 5'GT 69647291 Upstream 53bp 20463 chr1 16101153 16101153 1 + G T THCA 16101154 + 16101134 16101174 41 AAGTGTGGCGAGGTGGTCCGGGACCACATCATCAGGGCCCT AAGTGTGGCGAGGTGGTCCTGGACCACATCATCAGGGCCCT < 41bp 0.648936393852984 0.891879193392721 NA NA prediction 0.485885599079474 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16101154 chr1:16101153 nonsynonymous SNV 0.969 1 20 hm7G_associated_SNPs_22097 0 0 0 0 1 FBLIM1 chr1:16101113 3'AG 16101113 Downstream 41bp 20464 chr12 81627236 81627236 1 + G T LUSC 81627237 + 81627217 81627257 41 AGGTCACAGAATTTCTGCAGGCGCCATTGAAGAGGTATTGA AGGTCACAGAATTTCTGCATGCGCCATTGAAGAGGTATTGA < 41bp 0.632292157797898 0.875231428623624 NA NA prediction 0.485878541651453 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81627237 chr12:81627236 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22098 0 0 1 0 1 ACSS3 chr12:81627250 5'GT 81627250 Upstream 15bp 20465 chr9 130984553 130984553 1 + G T UCEC 130984554 + 130984534 130984574 41 AGCTACTGTCCATTGAGAAGGAGGTGGAGGAATACAAGAAC AGCTACTGTCCATTGAGAATGAGGTGGAGGAATACAAGAAC < 41bp 0.401983071333525 0.742937524616993 NA NA prediction 0.485875049233986 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130984554 chr9:130984553 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22099 0 0 1 0 2 DNM1 chr9:130984476 3'AG 130984476 Downstream 78bp 20466 chr9 130984553 130984553 1 + G T UCEC 130984554 + 130984534 130984574 41 AGCTACTGTCCATTGAGAAGGAGGTGGAGGAATACAAGAAC AGCTACTGTCCATTGAGAATGAGGTGGAGGAATACAAGAAC < 41bp 0.401983071333525 0.742937524616993 NA NA prediction 0.485875049233986 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130984554 chr9:130984553 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22099 0 0 1 0 2 DNM1 chr9:130984618 5'GT 130984618 Upstream 66bp 20467 chrX 3019199 3019199 1 + G T LUAD 3019200 + 3019180 3019220 41 CTACTTTACATCAGATCACGGAGGGCATTTGGAAGCTAGGC CTACTTTACATCAGATCACTGAGGGCATTTGGAAGCTAGGC < 41bp 0.638700658122195 0.881619582850517 NA NA prediction 0.485837849456644 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:3019200 chrX:3019199 stopgain 0.865 0 20 hm7G_associated_SNPs_22101 0 0 0 0 2 ARSF chrX:3019128 3'AG 3019128 Downstream 72bp 20468 chrX 3019199 3019199 1 + G T LUAD 3019200 + 3019180 3019220 41 CTACTTTACATCAGATCACGGAGGGCATTTGGAAGCTAGGC CTACTTTACATCAGATCACTGAGGGCATTTGGAAGCTAGGC < 41bp 0.638700658122195 0.881619582850517 NA NA prediction 0.485837849456644 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:3019200 chrX:3019199 stopgain 0.865 0 20 hm7G_associated_SNPs_22101 0 0 0 0 2 ARSF chrX:3019262 5'GT 3019262 Upstream 64bp 20469 chr6 44144383 44144383 1 + G T LUAD 44144384 + 44144364 44144404 41 CTGCACAAGACGGAGGACGGGGAGTTCTGGTCAGTGTGGCT CTGCACAAGACGGAGGACGTGGAGTTCTGGTCAGTGTGGCT < 41bp 0.402602214826842 0.742911653938496 NA NA prediction 0.485823307876993 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44144384 chr6:44144383 nonsynonymous SNV 0.062 4 20 hm7G_associated_SNPs_22103 0 0 0 0 1 CAPN11 chr6:44144392 5'GT 44144392 Upstream 10bp 20470 chr19 7928377 7928377 1 + G T COAD 7928378 + 7928358 7928398 41 GATGGGCTGAGCCTGGCGCGGCACTTGGACGAGGACTCGCT GATGGGCTGAGCCTGGCGCTGCACTTGGACGAGGACTCGCT < 41bp 0.635554544721169 0.87845727668434 NA NA prediction 0.485805463926342 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7928378 chr19:7928377 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_22104 0 0 1 0 1 EVI5L chr19:7928310 3'AG 7928310 Downstream 68bp 20471 chr4 184614124 184614124 1 + G T LUAD 184614125 + 184614105 184614145 41 CTTTTTAGATTACTTCAGTGGATCTTGCTCTGGGCAATGAG CTTTTTAGATTACTTCAGTTGATCTTGCTCTGGGCAATGAG < 41bp 0.414246372280654 0.742897985987395 NA NA prediction 0.48579597197479 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184614125 chr4:184614124 synonymous SNV . 0 20 hm7G_associated_SNPs_22105 0 0 1 0 1 TRAPPC11 chr4:184614113 3'AG 184614113 Downstream 12bp 20472 chr9 141070135 141070135 1 + G T STAD 141070136 + 141070116 141070156 41 GCTCGGGGCCCTTCGGGCAGGTCCTCAGGCCAGACAACTTC GCTCGGGGCCCTTCGGGCATGTCCTCAGGCCAGACAACTTC < 41bp 0.432473372389868 0.742895851008355 NA NA prediction 0.485791702016709 Functional Gain - TUBBP5 ENSG00000159247 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:141070136 chr9:141070135 . . 0 20 hm7G_associated_SNPs_22106 0 0 0 0 1 TUBBP5 chr9:141070053 3'AG 141070053 Downstream 83bp 20473 chr3 14939159 14939159 1 + G T COAD 14939160 + 14939140 14939180 41 GCATCCTGGAGGAGCTGGAGGAAAGGCTGTCAAATTGGTGA GCATCCTGGAGGAGCTGGATGAAAGGCTGTCAAATTGGTGA < 41bp 0.39942410760386 0.742863869672323 NA NA prediction 0.485727739344647 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14939160 chr3:14939159 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_22108 0 0 0 0 1 FGD5 chr3:14939176 5'GT 14939176 Upstream 18bp 20474 chr17 9765354 9765354 1 + G T LUAD 9765355 + 9765335 9765375 41 TAGGTGCTGGACAACAAATGGGAATAAGAAAATCTGGTGGA TAGGTGCTGGACAACAAATTGGAATAAGAAAATCTGGTGGA < 41bp 0.631386143112705 0.874245998722983 NA NA prediction 0.485719711220555 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9765355 chr17:9765354 nonsynonymous SNV 0.047 1 20 hm7G_associated_SNPs_22109 0 0 0 0 2 GLP2R chr17:9765338 3'AG 9765338 Downstream 17bp 20475 chr17 9765354 9765354 1 + G T LUAD 9765355 + 9765335 9765375 41 TAGGTGCTGGACAACAAATGGGAATAAGAAAATCTGGTGGA TAGGTGCTGGACAACAAATTGGAATAAGAAAATCTGGTGGA < 41bp 0.631386143112705 0.874245998722983 NA NA prediction 0.485719711220555 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9765355 chr17:9765354 nonsynonymous SNV 0.047 1 20 hm7G_associated_SNPs_22109 0 0 0 0 2 GLP2R chr17:9765407 5'GT 9765407 Upstream 54bp 20476 chr10 105139374 105139374 1 + G T OV 105139375 + 105139355 105139395 41 TGACTTGTAGGTATTTTTTGGTTTATTAAAAGAACCAGAAA TGACTTGTAGGTATTTTTTTGTTTATTAAAAGAACCAGAAA < 41bp 0.612565073030935 0.855424395813724 NA NA prediction 0.48571864556558 Functional Gain - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105139375 chr10:105139374 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22110 0 0 0 0 1 TAF5 chr10:105139365 3'AG 105139365 Downstream 10bp 20477 chr19 49652336 49652336 1 + G T LIHC 49652337 + 49652317 49652357 41 CACGAACCTCACGGAGAGCGGGGTACACGGGGCACTGCTCG CACGAACCTCACGGAGAGCTGGGTACACGGGGCACTGCTCG < 41bp 0.643284617741052 0.886143623296217 NA NA prediction 0.48571801111033 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652337 chr19:49652336 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_22111 0 0 1 0 2 PPFIA3 chr19:49652250 3'AG 49652250 Downstream 87bp 20478 chr19 49652336 49652336 1 + G T LIHC 49652337 + 49652317 49652357 41 CACGAACCTCACGGAGAGCGGGGTACACGGGGCACTGCTCG CACGAACCTCACGGAGAGCTGGGTACACGGGGCACTGCTCG < 41bp 0.643284617741052 0.886143623296217 NA NA prediction 0.48571801111033 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652337 chr19:49652336 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_22111 0 0 1 0 2 PPFIA3 chr19:49652425 5'GT 49652425 Upstream 90bp 20479 chr3 101572529 101572529 1 + G T LUAD 101572530 + 101572510 101572550 41 CGCCTGTGAGGCCATGGTGGGGCACGAGATGGCCTCTGACT CGCCTGTGAGGCCATGGTGTGGCACGAGATGGCCTCTGACT < 41bp 0.41167181488214 0.742821154916441 NA NA prediction 0.485642309832882 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101572530 chr3:101572529 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_22115 0 0 0 0 1 NFKBIZ chr3:101572445 3'AG 101572445 Downstream 85bp 20480 chr17 56271326 56271326 1 + G T UCEC 56271327 + 56271307 56271347 41 CCCACCCATGGCTGCAGGAGGAGACCCTTGCTAGGGGCCTC CCCACCCATGGCTGCAGGATGAGACCCTTGCTAGGGGCCTC < 41bp 0.406334168639659 0.742813003559693 NA NA prediction 0.485626007119385 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56271327 chr17:56271326 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_22117 0 0 0 0 1 EPX chr17:56271324 3'AG 56271324 Downstream 3bp 20481 chr11 65633352 65633352 1 + G T LUSC 65633353 + 65633333 65633373 41 GCTGAGCACCATTAAGTGTGGGCGTCTACAGAGGTGAGGGC GCTGAGCACCATTAAGTGTTGGCGTCTACAGAGGTGAGGGC < 41bp 0.641234424687467 0.884041099189614 NA NA prediction 0.485613349004293 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65633353 chr11:65633352 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22119 0 0 1 0 2 MUS81 chr11:65633282 3'AG 65633282 Downstream 71bp 20482 chr11 65633352 65633352 1 + G T LUSC 65633353 + 65633333 65633373 41 GCTGAGCACCATTAAGTGTGGGCGTCTACAGAGGTGAGGGC GCTGAGCACCATTAAGTGTTGGCGTCTACAGAGGTGAGGGC < 41bp 0.641234424687467 0.884041099189614 NA NA prediction 0.485613349004293 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65633353 chr11:65633352 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22119 0 0 1 0 2 MUS81 chr11:65633365 5'GT 65633365 Upstream 14bp 20483 chr13 25264557 25264557 1 + G T PAAD 25264558 + 25264538 25264578 41 GGACATTGTGGAGGTCAAAGGAGGAGACCAGATCCCTGCAG GGACATTGTGGAGGTCAAATGAGGAGACCAGATCCCTGCAG < 41bp 0.403158217473009 0.742804255050938 NA NA prediction 0.485608510101875 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264558 chr13:25264557 stopgain 0.980 1 20 hm7G_associated_SNPs_22120 0 0 0 0 2 ATP12A chr13:25264476 3'AG 25264476 Downstream 82bp 20484 chr13 25264557 25264557 1 + G T PAAD 25264558 + 25264538 25264578 41 GGACATTGTGGAGGTCAAAGGAGGAGACCAGATCCCTGCAG GGACATTGTGGAGGTCAAATGAGGAGACCAGATCCCTGCAG < 41bp 0.403158217473009 0.742804255050938 NA NA prediction 0.485608510101875 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264558 chr13:25264557 stopgain 0.980 1 20 hm7G_associated_SNPs_22120 0 0 0 0 2 ATP12A chr13:25264610 5'GT 25264610 Upstream 54bp 20485 chr9 71098793 71098793 1 + G T LUAD 71098794 + 71098774 71098814 41 TCACCAGGTTTGACTATGAGGGGTTGGATCCCAAGACGACA TCACCAGGTTTGACTATGATGGGTTGGATCCCAAGACGACA < 41bp 0.41343301514267 0.742787428879576 NA NA prediction 0.485574857759151 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71098794 chr9:71098793 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_22121 0 0 0 0 1 PGM5 chr9:71098781 3'AG 71098781 Downstream 13bp 20486 chr2 27852009 27852009 1 + G T LUSC 27852010 + 27851990 27852030 41 TGTTGGTGTTGGGAATGGCGGGATCCGGGAAAACCACTTTT TGTTGGTGTTGGGAATGGCTGGATCCGGGAAAACCACTTTT < 41bp 0.626998641954371 0.869770959998555 NA NA prediction 0.485544636088369 Functional Gain - GPN1 ENSG00000198522 CDS Human protein_coding chr2:27852010 chr2:27852009 synonymous SNV . 0 20 hm7G_associated_SNPs_22122 0 0 1 0 1 GPN1 chr2:27852036 5'GT 27852036 Upstream 28bp 20487 chr1 207874962 207874962 1 + G T UCEC 207874963 + 207874943 207874983 41 CAACTATTCTTGTACTACAGGGTGAGTTGGCAGCAACATCT CAACTATTCTTGTACTACATGGTGAGTTGGCAGCAACATCT < 41bp 0.429232290448015 0.74276152540574 NA NA prediction 0.485523050811479 Functional Gain - CR1L ENSG00000197721 CDS Human protein_coding chr1:207874963 chr1:207874962 nonsynonymous SNV 0.451 3 20 hm7G_associated_SNPs_22123 0 0 0 2 1 CR1L chr1:207874864 3'AG 207874864 Downstream 99bp 20488 chr9 35377532 35377532 1 + G T DLBC 35377533 + 35377513 35377553 41 ACATTATCATGGCCATGAAGGACCGCATGAAGATCCGAGAG ACATTATCATGGCCATGAATGACCGCATGAAGATCCGAGAG < 41bp 0.417434231079479 0.742746112358713 NA NA prediction 0.485492224717426 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35377533 chr9:35377532 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22124 0 0 1 0 1 UNC13B chr9:35377465 3'AG 35377465 Downstream 68bp 20489 chr5 82876222 82876222 1 + G T LUAD 82876223 + 82876203 82876243 41 TCCAAACATGATCATCGTTGGAGCCGGAGGTGGCAGGAGTC TCCAAACATGATCATCGTTTGAGCCGGAGGTGGCAGGAGTC < 41bp 0.607076908339054 0.849811722462074 NA NA prediction 0.485469628246039 Functional Gain - VCAN ENSG00000038427 CDS Human protein_coding chr5:82876223 chr5:82876222 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22126 0 0 1 0 1 VCAN chr5:82876126 3'AG 82876126 Downstream 97bp 20490 chr4 166924568 166924568 1 + G T COAD 166924569 + 166924549 166924589 41 CTCCTATGTAGGTCGGCGAGGAAATGGACCTCAGGCAATCT CTCCTATGTAGGTCGGCGATGAAATGGACCTCAGGCAATCT < 41bp 0.413771005311061 0.742729626541071 NA NA prediction 0.485459253082143 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166924569 chr4:166924568 stopgain 0.993 0 20 hm7G_associated_SNPs_22128 0 0 0 0 1 TLL1 chr4:166924543 3'AG 166924543 Downstream 26bp 20491 chr13 113487249 113487249 1 + G T COAD 113487250 + 113487230 113487270 41 AGACGATGACAGCGTAGACGGCCCCAGGAAATCGCCGGACG AGACGATGACAGCGTAGACTGCCCCAGGAAATCGCCGGACG < 41bp 0.388308912217609 0.742711751287327 NA NA prediction 0.485423502574654 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487250 chr13:113487249 nonsynonymous SNV 0.066 4 20 hm7G_associated_SNPs_22129 0 0 1 0 2 ATP11A chr13:113487174 3'AG 113487174 Downstream 76bp 20492 chr13 113487249 113487249 1 + G T COAD 113487250 + 113487230 113487270 41 AGACGATGACAGCGTAGACGGCCCCAGGAAATCGCCGGACG AGACGATGACAGCGTAGACTGCCCCAGGAAATCGCCGGACG < 41bp 0.388308912217609 0.742711751287327 NA NA prediction 0.485423502574654 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487250 chr13:113487249 nonsynonymous SNV 0.066 4 20 hm7G_associated_SNPs_22129 0 0 1 0 2 ATP11A chr13:113487337 5'GT 113487337 Upstream 89bp 20493 chr3 186505598 186505598 1 + G T UCEC 186505599 + 186505579 186505619 41 CATTGTGTTTCAGGCTCGCGGGATTGATGTGCAACAAGTGT CATTGTGTTTCAGGCTCGCTGGATTGATGTGCAACAAGTGT < 41bp 0.607186422738876 0.849878756306305 NA NA prediction 0.485384667134857 Functional Gain - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505599 chr3:186505598 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22130 0 0 1 4 2 EIF4A2 chr3:186505592 3'AG 186505592 Downstream 7bp 20494 chr3 186505598 186505598 1 + G T UCEC 186505599 + 186505579 186505619 41 CATTGTGTTTCAGGCTCGCGGGATTGATGTGCAACAAGTGT CATTGTGTTTCAGGCTCGCTGGATTGATGTGCAACAAGTGT < 41bp 0.607186422738876 0.849878756306305 NA NA prediction 0.485384667134857 Functional Gain - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505599 chr3:186505598 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22130 0 0 1 4 2 EIF4A2 chr3:186505671 5'GT 186505671 Upstream 74bp 20495 chr17 80684448 80684448 1 + G T LUAD 80684449 + 80684429 80684469 41 AGAAGGAGTCTGGGGACAGGGAGGCCCTCCAGCTTTGGTCT AGAAGGAGTCTGGGGACAGTGAGGCCCTCCAGCTTTGGTCT < 41bp 0.393416411087054 0.742668079159501 NA NA prediction 0.485336158319001 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684449 chr17:80684448 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_22133 0 0 1 0 2 FN3KRP chr17:80684356 3'AG 80684356 Downstream 93bp 20496 chr17 80684448 80684448 1 + G T LUAD 80684449 + 80684429 80684469 41 AGAAGGAGTCTGGGGACAGGGAGGCCCTCCAGCTTTGGTCT AGAAGGAGTCTGGGGACAGTGAGGCCCTCCAGCTTTGGTCT < 41bp 0.393416411087054 0.742668079159501 NA NA prediction 0.485336158319001 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684449 chr17:80684448 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_22133 0 0 1 0 2 FN3KRP chr17:80684478 5'GT 80684478 Upstream 31bp 20497 chrX 47044477 47044477 1 + G T LUAD 47044478 + 47044458 47044498 41 CCAAGGACATGGAACGCTGGGCCCGCAGTCTCAACAAACAA CCAAGGACATGGAACGCTGTGCCCGCAGTCTCAACAAACAA < 41bp 0.390881668894729 0.742662520186061 NA NA prediction 0.485325040372123 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47044478 chrX:47044477 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22135 0 0 1 0 1 RBM10 chrX:47044454 3'AG 47044454 Downstream 24bp 20498 chr11 134182735 134182735 1 + G T LUSC 134182736 + 134182716 134182756 41 TTGGATGAGACAATGATAGGGATTCTGAATGAGAATAATAA TTGGATGAGACAATGATAGTGATTCTGAATGAGAATAATAA < 41bp 0.410084897674468 0.742640263218839 NA NA prediction 0.485280526437678 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182736 chr11:134182735 nonsynonymous SNV 0.208 5 20 hm7G_associated_SNPs_22138 0 0 0 0 1 GLB1L3 chr11:134182710 3'AG 134182710 Downstream 26bp 20499 chr1 116663591 116663591 1 + G T UCEC 116663592 + 116663572 116663612 41 AGATTTCCCAGGCTGTGGAGGAGGTGCAGAAAGTCGTTCAT AGATTTCCCAGGCTGTGGATGAGGTGCAGAAAGTCGTTCAT < 41bp 0.635568754563719 0.87819666714638 NA NA prediction 0.485255825165323 Functional Gain - MAB21L3 ENSG00000173212 CDS Human protein_coding chr1:116663592 chr1:116663591 nonsynonymous SNV 0.934 0 20 hm7G_associated_SNPs_22139 0 0 0 0 1 MAB21L3 chr1:116663553 3'AG 116663553 Downstream 39bp 20500 chr1 65247137 65247137 1 + G T OV 65247138 + 65247118 65247158 41 CTGCGGAGCAGGCTGAAGAGGTCCAGCAGGCAGCAGACGGT CTGCGGAGCAGGCTGAAGATGTCCAGCAGGCAGCAGACGGT < 41bp 0.636972511639824 0.879599817083011 NA NA prediction 0.485254610886374 Functional Gain - RAVER2 ENSG00000162437 CDS Human protein_coding chr1:65247138 chr1:65247137 nonsynonymous SNV 0.162 1 20 hm7G_associated_SNPs_22140 0 0 0 0 1 RAVER2 chr1:65247063 3'AG 65247063 Downstream 75bp 20501 chr3 9726923 9726923 1 + G T COAD 9726924 + 9726904 9726944 41 GGTAGATCGGCTCAGCAAAGGGGAGGAGGTGAGTATACCAC GGTAGATCGGCTCAGCAAATGGGAGGAGGTGAGTATACCAC < 41bp 0.64209765598263 0.8847076314663 NA NA prediction 0.485219950967341 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9726924 chr3:9726923 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22142 0 0 1 0 2 MTMR14 chr3:9726895 3'AG 9726895 Downstream 29bp 20502 chr3 9726923 9726923 1 + G T COAD 9726924 + 9726904 9726944 41 GGTAGATCGGCTCAGCAAAGGGGAGGAGGTGAGTATACCAC GGTAGATCGGCTCAGCAAATGGGAGGAGGTGAGTATACCAC < 41bp 0.64209765598263 0.8847076314663 NA NA prediction 0.485219950967341 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9726924 chr3:9726923 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22142 0 0 1 0 2 MTMR14 chr3:9726931 5'GT 9726931 Upstream 9bp 20503 chr19 58757740 58757740 1 + G T OV 58757741 + 58757721 58757761 41 CAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGAC CAGCTGGACCTGGCCCAGATGACACTGTACCGAGAGGTGAC < 41bp 0.466888273841008 0.742608558886346 NA NA prediction 0.485217117772692 Functional Gain - ZNF544 ENSG00000198131;ENSG00000269545;ENSG00000198131 exonic;splicing Human other chr19:58757741 chr19:58757740 nonsynonymous SNV 0.770 3 20 hm7G_associated_SNPs_22143 0 0 1 0 2 ZNF544 chr19:58757667 3'AG 58757667 Downstream 74bp 20504 chr19 58757740 58757740 1 + G T OV 58757741 + 58757721 58757761 41 CAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGAC CAGCTGGACCTGGCCCAGATGACACTGTACCGAGAGGTGAC < 41bp 0.466888273841008 0.742608558886346 NA NA prediction 0.485217117772692 Functional Gain - ZNF544 ENSG00000198131;ENSG00000269545;ENSG00000198131 exonic;splicing Human protein_coding chr19:58757741 chr19:58757740 nonsynonymous SNV 0.770 3 20 hm7G_associated_SNPs_22143 0 0 1 0 2 ZNF544 chr19:58757793 5'GT 58757793 Upstream 54bp 20505 chr2 120409636 120409636 1 + G T UCEC 120409637 + 120409617 120409657 41 TTGAACTACAAGGACATCAGGAAGGAGAAGTAAGTGGATGC TTGAACTACAAGGACATCATGAAGGAGAAGTAAGTGGATGC < 41bp 0.613910816250261 0.856517996763451 NA NA prediction 0.485214361026379 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120409637 chr2:120409636 nonsynonymous SNV 0.908 1 20 hm7G_associated_SNPs_22144 0 0 0 0 2 CFAP221 chr2:120409550 3'AG 120409550 Downstream 87bp 20506 chr2 120409636 120409636 1 + G T UCEC 120409637 + 120409617 120409657 41 TTGAACTACAAGGACATCAGGAAGGAGAAGTAAGTGGATGC TTGAACTACAAGGACATCATGAAGGAGAAGTAAGTGGATGC < 41bp 0.613910816250261 0.856517996763451 NA NA prediction 0.485214361026379 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120409637 chr2:120409636 nonsynonymous SNV 0.908 1 20 hm7G_associated_SNPs_22144 0 0 0 0 2 CFAP221 chr2:120409645 5'GT 120409645 Upstream 10bp 20507 chr19 19166681 19166681 1 + G T LUSC 19166682 + 19166662 19166702 41 CATCATCGTGGAGGGTGGCGGGGCTGTGGCAGCACTGCAGG CATCATCGTGGAGGGTGGCTGGGCTGTGGCAGCACTGCAGG < 41bp 0.643678388381647 0.886285190185302 NA NA prediction 0.485213603607309 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166682 chr19:19166681 nonsynonymous SNV 0.416 4 20 hm7G_associated_SNPs_22145 0 0 1 0 2 ARMC6 chr19:19166600 3'AG 19166600 Downstream 82bp 20508 chr19 19166681 19166681 1 + G T LUSC 19166682 + 19166662 19166702 41 CATCATCGTGGAGGGTGGCGGGGCTGTGGCAGCACTGCAGG CATCATCGTGGAGGGTGGCTGGGCTGTGGCAGCACTGCAGG < 41bp 0.643678388381647 0.886285190185302 NA NA prediction 0.485213603607309 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166682 chr19:19166681 nonsynonymous SNV 0.416 4 20 hm7G_associated_SNPs_22145 0 0 1 0 2 ARMC6 chr19:19166737 5'GT 19166737 Upstream 57bp 20509 chr14 78365548 78365548 1 + G T OV 78365549 + 78365529 78365569 41 GCTGGATTTCCTCAATGAAGGGAGGAATGCTGAGAAGGTGT GCTGGATTTCCTCAATGAATGGAGGAATGCTGAGAAGGTGT < 41bp 0.626554895849088 0.869154536018314 NA NA prediction 0.485199280338452 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78365549 chr14:78365548 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22146 0 0 1 1 1 ADCK1 chr14:78365601 5'GT 78365601 Upstream 54bp 20510 chr12 27475300 27475300 1 + G T BRCA 27475301 + 27475281 27475321 41 GACTACAAATCCAAAGACTGGGTTTTTCTCAATTATACCTA GACTACAAATCCAAAGACTTGGTTTTTCTCAATTATACCTA < 41bp 0.441427903763103 0.742599272948821 NA NA prediction 0.485198545897643 Functional Gain - STK38L ENSG00000211455 CDS Human protein_coding chr12:27475301 chr12:27475300 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22147 0 0 1 0 1 STK38L chr12:27475261 3'AG 27475261 Downstream 40bp 20511 chr16 50664180 50664180 1 + G T SKCM 50664181 + 50664161 50664201 41 CATCCAGCAAGATGCTGCGGGTAAAGCTCACCGTGGCCCCC CATCCAGCAAGATGCTGCGTGTAAAGCTCACCGTGGCCCCC < 41bp 0.396432182820773 0.742594782835595 NA NA prediction 0.48518956567119 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50664181 chr16:50664180 synonymous SNV . 0 20 hm7G_associated_SNPs_22148 0 0 1 0 2 NKD1 chr16:50664097 3'AG 50664097 Downstream 84bp 20512 chr16 50664180 50664180 1 + G T SKCM 50664181 + 50664161 50664201 41 CATCCAGCAAGATGCTGCGGGTAAAGCTCACCGTGGCCCCC CATCCAGCAAGATGCTGCGTGTAAAGCTCACCGTGGCCCCC < 41bp 0.396432182820773 0.742594782835595 NA NA prediction 0.48518956567119 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50664181 chr16:50664180 synonymous SNV . 0 20 hm7G_associated_SNPs_22148 0 0 1 0 2 NKD1 chr16:50664244 5'GT 50664244 Upstream 65bp 20513 chr11 118255419 118255419 1 + G T PRAD 118255420 + 118255400 118255440 41 CCTATCCTAAGATACATGTGGGGGACAGATACCTATCGGGA CCTATCCTAAGATACATGTTGGGGACAGATACCTATCGGGA < 41bp 0.635742808545244 0.878313702670244 NA NA prediction 0.48514178825 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118255420 chr11:118255419 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22152 0 0 1 0 2 UBE4A chr11:118255350 3'AG 118255350 Downstream 70bp 20514 chr11 118255419 118255419 1 + G T PRAD 118255420 + 118255400 118255440 41 CCTATCCTAAGATACATGTGGGGGACAGATACCTATCGGGA CCTATCCTAAGATACATGTTGGGGACAGATACCTATCGGGA < 41bp 0.635742808545244 0.878313702670244 NA NA prediction 0.48514178825 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118255420 chr11:118255419 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22152 0 0 1 0 2 UBE4A chr11:118255450 5'GT 118255450 Upstream 32bp 20515 chr12 27863860 27863860 1 + G T TGCT 27863861 + 27863841 27863881 41 TCTCCACTGCCGTCTACTCGGCCACTCCGGTCCCGACACCT TCTCCACTGCCGTCTACTCTGCCACTCCGGTCCCGACACCT < 41bp 0.421667792021732 0.742521309197097 NA NA prediction 0.485042618394194 Functional Gain - MRPS35 ENSG00000061794 CDS Human protein_coding chr12:27863861 chr12:27863860 synonymous SNV . 0 20 hm7G_associated_SNPs_22156 0 0 1 0 1 MRPS35 chr12:27863888 5'GT 27863888 Upstream 29bp 20516 chr11 67817504 67817504 1 + G T THCA 67817505 + 67817485 67817525 41 CTCCGATGAGGAAAAGGCAGGGGGCCTGGATGATGAAGAGG CTCCGATGAGGAAAAGGCATGGGGCCTGGATGATGAAGAGG < 41bp 0.402292918881416 0.742510864543083 NA NA prediction 0.485021729086166 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67817505 chr11:67817504 nonsynonymous SNV 0.141 4 20 hm7G_associated_SNPs_22157 0 0 1 0 1 TCIRG1 chr11:67817533 5'GT 67817533 Upstream 30bp 20517 chr17 55065061 55065061 1 + G T LUAD 55065062 + 55065042 55065082 41 TCCGTGGTACATAGCTCCAGGCTGCCAGTCTCCTATTTGTG TCCGTGGTACATAGCTCCATGCTGCCAGTCTCCTATTTGTG < 41bp 0.640950877516065 0.883460743384121 NA NA prediction 0.485019731736111 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55065062 chr17:55065061 nonsynonymous SNV 0.084 3 20 hm7G_associated_SNPs_22158 0 0 0 3 1 SCPEP1 chr17:55065056 3'AG 55065056 Downstream 6bp 20518 chr3 170016842 170016842 1 + G T UCEC 170016843 + 170016823 170016863 41 TTTCTGGGGAATTTGGTTTGGACAACTTTGATTCTCAGTTT TTTCTGGGGAATTTGGTTTTGACAACTTTGATTCTCAGTTT < 41bp 0.444467335975537 0.742504117203205 NA NA prediction 0.485008234406411 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170016843 chr3:170016842 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_22160 0 0 0 0 2 PRKCI chr3:170016783 3'AG 170016783 Downstream 60bp 20519 chr3 170016842 170016842 1 + G T UCEC 170016843 + 170016823 170016863 41 TTTCTGGGGAATTTGGTTTGGACAACTTTGATTCTCAGTTT TTTCTGGGGAATTTGGTTTTGACAACTTTGATTCTCAGTTT < 41bp 0.444467335975537 0.742504117203205 NA NA prediction 0.485008234406411 Functional Gain - PRKCI ENSG00000163558 CDS Human protein_coding chr3:170016843 chr3:170016842 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_22160 0 0 0 0 2 PRKCI chr3:170016898 5'GT 170016898 Upstream 57bp 20520 chr1 33959142 33959142 1 + G T STAD 33959143 + 33959123 33959163 41 GTGCTGAGACTGATGCCCAGGAGGCCTGGGGTGAAGTGGCC GTGCTGAGACTGATGCCCATGAGGCCTGGGGTGAAGTGGCC < 41bp 0.394318032984194 0.742501170215158 NA NA prediction 0.485002340430317 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33959143 chr1:33959142 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_22161 0 0 1 0 1 ZSCAN20 chr1:33959215 5'GT 33959215 Upstream 74bp 20521 chr11 9424896 9424896 1 + G T KIRC 9424897 + 9424877 9424917 41 TTACTATGTCGGAACAGCTGGATTTACCTGTGAGACAGGCA TTACTATGTCGGAACAGCTTGATTTACCTGTGAGACAGGCA < 41bp 0.634589518967906 0.877085168419588 NA NA prediction 0.484991298903364 Functional Gain - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9424897 chr11:9424896 synonymous SNV . 0 20 hm7G_associated_SNPs_22162 0 0 1 0 1 IPO7 chr11:9424837 3'AG 9424837 Downstream 60bp 20522 chr15 65226380 65226380 1 + G T HNSC 65226381 + 65226361 65226401 41 CAGCCCTCAGTGGCTCGGAGGATGTGTCTCGGGTCCTCATC CAGCCCTCAGTGGCTCGGATGATGTGTCTCGGGTCCTCATC < 41bp 0.393513919723846 0.742491792230032 NA NA prediction 0.484983584460064 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65226381 chr15:65226380 nonsynonymous SNV 0.124 0 20 hm7G_associated_SNPs_22163 0 0 0 0 2 ANKDD1A chr15:65226336 3'AG 65226336 Downstream 45bp 20523 chr15 65226380 65226380 1 + G T HNSC 65226381 + 65226361 65226401 41 CAGCCCTCAGTGGCTCGGAGGATGTGTCTCGGGTCCTCATC CAGCCCTCAGTGGCTCGGATGATGTGTCTCGGGTCCTCATC < 41bp 0.393513919723846 0.742491792230032 NA NA prediction 0.484983584460064 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65226381 chr15:65226380 nonsynonymous SNV 0.124 0 20 hm7G_associated_SNPs_22163 0 0 0 0 2 ANKDD1A chr15:65226434 5'GT 65226434 Upstream 55bp 20524 chr7 6786734 6786734 1 + G T CESC 6786735 + 6786715 6786755 41 GCTGGACCTTCGGACCCCAGGACGTCGATGAACTGATCTTC GCTGGACCTTCGGACCCCATGACGTCGATGAACTGATCTTC < 41bp 0.409525642775707 0.742457950365208 NA NA prediction 0.484915900730416 Functional Gain - PMS2CL ENSG00000187953 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:6786735 chr7:6786734 . . 0 20 hm7G_associated_SNPs_22165 0 0 0 0 1 PMS2CL chr7:6786667 3'AG 6786667 Downstream 68bp 20525 chr11 110327730 110327730 1 + G T LUAD 110327731 + 110327711 110327751 41 TAGATGCAATCACTGATGAGGAGAATGACATGCTCGATCTG TAGATGCAATCACTGATGATGAGAATGACATGCTCGATCTG < 41bp 0.615445470403466 0.857902394237198 NA NA prediction 0.484913847667465 Functional Gain - FDX1 ENSG00000137714 CDS Human protein_coding chr11:110327731 chr11:110327730 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_22167 0 0 1 0 2 FDX1 chr11:110327642 3'AG 110327642 Downstream 89bp 20526 chr11 110327730 110327730 1 + G T LUAD 110327731 + 110327711 110327751 41 TAGATGCAATCACTGATGAGGAGAATGACATGCTCGATCTG TAGATGCAATCACTGATGATGAGAATGACATGCTCGATCTG < 41bp 0.615445470403466 0.857902394237198 NA NA prediction 0.484913847667465 Functional Gain - FDX1 ENSG00000137714 CDS Human protein_coding chr11:110327731 chr11:110327730 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_22167 0 0 1 0 2 FDX1 chr11:110327771 5'GT 110327771 Upstream 42bp 20527 chr7 99219167 99219167 1 + G T BRCA 99219168 + 99219148 99219188 41 GCAGCTCAGTCAGGACCCTGGAGATGAGACACGGGCCTTCC GCAGCTCAGTCAGGACCCTTGAGATGAGACACGGGCCTTCC < 41bp 0.408201520153788 0.742438722823151 NA NA prediction 0.484877445646301 Functional Gain - ZSCAN25 ENSG00000197037 CDS Human protein_coding chr7:99219168 chr7:99219167 stopgain 0.482 0 20 hm7G_associated_SNPs_22168 0 0 1 0 1 ZSCAN25 chr7:99219197 5'GT 99219197 Upstream 31bp 20528 chr9 37801401 37801401 1 + G T LUSC 37801402 + 37801382 37801422 41 CCTCGAGTACTCGCCCGACGGGTAAGCGCGGCCCCTCGGAG CCTCGAGTACTCGCCCGACTGGTAAGCGCGGCCCCTCGGAG < 41bp 0.423063583548548 0.742434673402087 NA NA prediction 0.484869346804174 Functional Gain - DCAF10 ENSG00000122741 CDS Human protein_coding chr9:37801402 chr9:37801401 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22169 0 0 1 0 1 DCAF10 chr9:37801402 5'GT 37801402 Upstream 2bp 20529 chr15 91450695 91450695 1 + G T SKCM 91450696 + 91450676 91450716 41 CCTTGGAAGGTGCCACCCCGGGCCATCACAGAGGCCAACGT CCTTGGAAGGTGCCACCCCTGGCCATCACAGAGGCCAACGT < 41bp 0.392591087192211 0.742434164660315 NA NA prediction 0.48486832932063 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91450696 chr15:91450695 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_22170 0 0 1 0 1 MAN2A2 chr15:91450725 5'GT 91450725 Upstream 31bp 20530 chr11 824068 824068 1 + G T GBM 824069 + 824049 824089 41 ACATGCTGCCTGTGCGTCTGGCCACGGCCATGATGGTGCCC ACATGCTGCCTGTGCGTCTTGCCACGGCCATGATGGTGCCC < 41bp 0.650948691025734 0.893381227561841 NA NA prediction 0.484865073072213 Functional Gain - PNPLA2 ENSG00000177666 CDS Human protein_coding chr11:824069 chr11:824068 synonymous SNV . 0 20 hm7G_associated_SNPs_22171 0 0 1 0 2 PNPLA2 chr11:823998 3'AG 823998 Downstream 71bp 20531 chr11 824068 824068 1 + G T GBM 824069 + 824049 824089 41 ACATGCTGCCTGTGCGTCTGGCCACGGCCATGATGGTGCCC ACATGCTGCCTGTGCGTCTTGCCACGGCCATGATGGTGCCC < 41bp 0.650948691025734 0.893381227561841 NA NA prediction 0.484865073072213 Functional Gain - PNPLA2 ENSG00000177666 CDS Human protein_coding chr11:824069 chr11:824068 synonymous SNV . 0 20 hm7G_associated_SNPs_22171 0 0 1 0 2 PNPLA2 chr11:824130 5'GT 824130 Upstream 63bp 20532 chr11 119051907 119051907 1 + G T OV 119051908 + 119051888 119051928 41 TCAACAGCCTGGGCCCTGAGGCCTGCAAGGACCTCCGAGAC TCAACAGCCTGGGCCCTGATGCCTGCAAGGACCTCCGAGAC < 41bp 0.64915441801165 0.891584282764648 NA NA prediction 0.484859729505995 Functional Gain - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119051908 chr11:119051907 nonsynonymous SNV 0.448 0 20 hm7G_associated_SNPs_22172 0 0 0 0 2 NLRX1 chr11:119051880 3'AG 119051880 Downstream 28bp 20533 chr11 119051907 119051907 1 + G T OV 119051908 + 119051888 119051928 41 TCAACAGCCTGGGCCCTGAGGCCTGCAAGGACCTCCGAGAC TCAACAGCCTGGGCCCTGATGCCTGCAAGGACCTCCGAGAC < 41bp 0.64915441801165 0.891584282764648 NA NA prediction 0.484859729505995 Functional Gain - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119051908 chr11:119051907 nonsynonymous SNV 0.448 0 20 hm7G_associated_SNPs_22172 0 0 0 0 2 NLRX1 chr11:119051966 5'GT 119051966 Upstream 60bp 20534 chr1 65849883 65849883 1 + G T LUSC 65849884 + 65849864 65849904 41 TTTCTTTGACAGGATGGACGGGCGGCATCATCAATTCTGGT TTTCTTTGACAGGATGGACTGGCGGCATCATCAATTCTGGT < 41bp 0.421075256586123 0.742428687116521 NA NA prediction 0.484857374233043 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65849884 chr1:65849883 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22173 0 0 1 0 1 DNAJC6 chr1:65849876 3'AG 65849876 Downstream 8bp 20535 chr1 231483612 231483612 1 + G T LUSC 231483613 + 231483593 231483633 41 CAAAGACCGAGAAGGGCATGGTCCAGAATTTTGTAAACATA CAAAGACCGAGAAGGGCATTGTCCAGAATTTTGTAAACATA < 41bp 0.418416041525921 0.742422451285599 NA NA prediction 0.484844902571198 Functional Gain - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231483613 chr1:231483612 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_22174 0 0 1 0 2 SPRTN chr1:231483543 3'AG 231483543 Downstream 70bp 20536 chr1 231483612 231483612 1 + G T LUSC 231483613 + 231483593 231483633 41 CAAAGACCGAGAAGGGCATGGTCCAGAATTTTGTAAACATA CAAAGACCGAGAAGGGCATTGTCCAGAATTTTGTAAACATA < 41bp 0.418416041525921 0.742422451285599 NA NA prediction 0.484844902571198 Functional Gain - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231483613 chr1:231483612 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_22174 0 0 1 0 2 SPRTN chr1:231483671 5'GT 231483671 Upstream 60bp 20537 chr2 27656616 27656616 1 + G T UCEC 27656617 + 27656597 27656637 41 GAAGGTGTAGAGGTTGTGTGGAATGAGGTACAGTTCTCTGA GAAGGTGTAGAGGTTGTGTTGAATGAGGTACAGTTCTCTGA < 41bp 0.643749818643896 0.886144443454184 NA NA prediction 0.484789249620577 Functional Gain - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27656617 chr2:27656616 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22177 0 0 1 0 2 NRBP1 chr2:27656540 3'AG 27656540 Downstream 77bp 20538 chr2 27656616 27656616 1 + G T UCEC 27656617 + 27656597 27656637 41 GAAGGTGTAGAGGTTGTGTGGAATGAGGTACAGTTCTCTGA GAAGGTGTAGAGGTTGTGTTGAATGAGGTACAGTTCTCTGA < 41bp 0.643749818643896 0.886144443454184 NA NA prediction 0.484789249620577 Functional Gain - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27656617 chr2:27656616 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22177 0 0 1 0 2 NRBP1 chr2:27656662 5'GT 27656662 Upstream 47bp 20539 chr10 19856482 19856482 1 + G T UCEC 19856483 + 19856463 19856503 41 CCTGGTGTGGTCAGTGATTGGAAATAAAAGAACGGGATGGA CCTGGTGTGGTCAGTGATTTGAAATAAAAGAACGGGATGGA < 41bp 0.622549518212437 0.864937764800482 NA NA prediction 0.484776493176091 Functional Gain - MALRD1 ENSG00000204740 CDS Human protein_coding chr10:19856483 chr10:19856482 stopgain 0.539 0 20 hm7G_associated_SNPs_22178 0 0 1 0 1 MALRD1 chr10:19856431 3'AG 19856431 Downstream 52bp 20540 chr6 44119647 44119647 1 + G T THCA 44119648 + 44119628 44119668 41 CATTGCCTCAGCCTTTATCGGCAACGCCATGGACCTGCTGC CATTGCCTCAGCCTTTATCTGCAACGCCATGGACCTGCTGC < 41bp 0.645821607494468 0.888186190533441 NA NA prediction 0.484729166077946 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44119648 chr6:44119647 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22179 0 0 1 1 2 TMEM63B chr6:44119583 3'AG 44119583 Downstream 65bp 20541 chr6 44119647 44119647 1 + G T THCA 44119648 + 44119628 44119668 41 CATTGCCTCAGCCTTTATCGGCAACGCCATGGACCTGCTGC CATTGCCTCAGCCTTTATCTGCAACGCCATGGACCTGCTGC < 41bp 0.645821607494468 0.888186190533441 NA NA prediction 0.484729166077946 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44119648 chr6:44119647 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22179 0 0 1 1 2 TMEM63B chr6:44119745 5'GT 44119745 Upstream 99bp 20542 chr11 55653314 55653314 1 + G T LUSC 55653315 + 55653295 55653335 41 TGGGCTGCTGAGGAACGCCGGGTAAGTGATGCCTCTGAAGA TGGGCTGCTGAGGAACGCCTGGTAAGTGATGCCTCTGAAGA < 41bp 0.62434391300168 0.866701739442834 NA NA prediction 0.484715652882309 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653315 chr11:55653314 nonsynonymous SNV 0.008 1 20 hm7G_associated_SNPs_22181 0 0 0 0 1 TRIM51 chr11:55653315 5'GT 55653315 Upstream 2bp 20543 chr2 73912101 73912101 1 + G T UCEC 73912102 + 73912082 73912122 41 ATCAAGGACACACGCAGGAGGAACAGTAGCACAAAGGCTTC ATCAAGGACACACGCAGGATGAACAGTAGCACAAAGGCTTC < 41bp 0.467583243165503 0.742355447856343 NA NA prediction 0.484710895712685 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73912102 chr2:73912101 . . 0 20 hm7G_associated_SNPs_22182 0 0 0 0 1 ALMS1P1 chr2:73912088 3'AG 73912088 Downstream 14bp 20544 chr18 6887158 6887158 1 + G T UCEC 6887159 + 6887139 6887179 41 TTCTGTTTTCTTGTTAGGAGGGCCTCACGTCAAAGTACAGT TTCTGTTTTCTTGTTAGGATGGCCTCACGTCAAAGTACAGT < 41bp 0.421152871214045 0.742347484762691 NA NA prediction 0.484694969525381 Functional Gain - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6887159 chr18:6887158 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22185 0 0 0 0 2 ARHGAP28 chr18:6887156 3'AG 6887156 Downstream 3bp 20545 chr18 6887158 6887158 1 + G T UCEC 6887159 + 6887139 6887179 41 TTCTGTTTTCTTGTTAGGAGGGCCTCACGTCAAAGTACAGT TTCTGTTTTCTTGTTAGGATGGCCTCACGTCAAAGTACAGT < 41bp 0.421152871214045 0.742347484762691 NA NA prediction 0.484694969525381 Functional Gain - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6887159 chr18:6887158 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22185 0 0 0 0 2 ARHGAP28 chr18:6887238 5'GT 6887238 Upstream 81bp 20546 chr14 105054645 105054645 1 + G T LUAD 105054646 + 105054626 105054666 41 ACGCCACAGCCACTGTCAGGGGTGAGTTCTGAGCCCACATC ACGCCACAGCCACTGTCAGTGGTGAGTTCTGAGCCCACATC < 41bp 0.40640322615906 0.742340924093315 NA NA prediction 0.48468184818663 Functional Gain - C14orf180 ENSG00000184601 CDS Human protein_coding chr14:105054646 chr14:105054645 nonsynonymous SNV 0.050 0 20 hm7G_associated_SNPs_22187 0 0 1 0 2 C14orf180 chr14:105054611 3'AG 105054611 Downstream 35bp 20547 chr14 105054645 105054645 1 + G T LUAD 105054646 + 105054626 105054666 41 ACGCCACAGCCACTGTCAGGGGTGAGTTCTGAGCCCACATC ACGCCACAGCCACTGTCAGTGGTGAGTTCTGAGCCCACATC < 41bp 0.40640322615906 0.742340924093315 NA NA prediction 0.48468184818663 Functional Gain - C14orf180 ENSG00000184601 CDS Human protein_coding chr14:105054646 chr14:105054645 nonsynonymous SNV 0.050 0 20 hm7G_associated_SNPs_22187 0 0 1 0 2 C14orf180 chr14:105054646 5'GT 105054646 Upstream 2bp 20548 chr1 178745920 178745920 1 + G T LUSC 178745921 + 178745901 178745941 41 TGGACCTAATGAACGGGCAGGCAAGCAGTGTCAATATTGCA TGGACCTAATGAACGGGCATGCAAGCAGTGTCAATATTGCA < 41bp 0.416035251787905 0.742337180920649 NA NA prediction 0.484674361841297 Functional Gain - RALGPS2 ENSG00000116191 CDS Human protein_coding chr1:178745921 chr1:178745920 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_22188 0 0 1 0 1 RALGPS2 chr1:178745956 5'GT 178745956 Upstream 37bp 20549 chr10 12856257 12856257 1 + G T LUSC 12856258 + 12856238 12856278 41 TCTTTGAGCAGATCCTCAAGGCGGAATATGAGTTTGACTCT TCTTTGAGCAGATCCTCAATGCGGAATATGAGTTTGACTCT < 41bp 0.424867780545204 0.742330247686229 NA NA prediction 0.484660495372459 Functional Gain - CAMK1D ENSG00000183049 CDS Human protein_coding chr10:12856258 chr10:12856257 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22189 0 0 0 0 2 CAMK1D chr10:12856194 3'AG 12856194 Downstream 64bp 20550 chr10 12856257 12856257 1 + G T LUSC 12856258 + 12856238 12856278 41 TCTTTGAGCAGATCCTCAAGGCGGAATATGAGTTTGACTCT TCTTTGAGCAGATCCTCAATGCGGAATATGAGTTTGACTCT < 41bp 0.424867780545204 0.742330247686229 NA NA prediction 0.484660495372459 Functional Gain - CAMK1D ENSG00000183049 CDS Human protein_coding chr10:12856258 chr10:12856257 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22189 0 0 0 0 2 CAMK1D chr10:12856306 5'GT 12856306 Upstream 50bp 20551 chr10 70922174 70922174 1 + G T UCEC 70922175 + 70922155 70922195 41 CCAATAGGTATCATTTAAAGGATGTGATTGTTGGAAAAATT CCAATAGGTATCATTTAAATGATGTGATTGTTGGAAAAATT < 41bp 0.608232943858847 0.850556231271934 NA NA prediction 0.484646574826174 Functional Gain - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70922175 chr10:70922174 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22190 0 0 1 0 2 VPS26A chr10:70922162 3'AG 70922162 Downstream 13bp 20552 chr10 70922174 70922174 1 + G T UCEC 70922175 + 70922155 70922195 41 CCAATAGGTATCATTTAAAGGATGTGATTGTTGGAAAAATT CCAATAGGTATCATTTAAATGATGTGATTGTTGGAAAAATT < 41bp 0.608232943858847 0.850556231271934 NA NA prediction 0.484646574826174 Functional Gain - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70922175 chr10:70922174 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22190 0 0 1 0 2 VPS26A chr10:70922268 5'GT 70922268 Upstream 95bp 20553 chr11 20403741 20403741 1 + G T UCEC 20403742 + 20403722 20403762 41 AGGGAGAAGTAGAAGCCAAGGTTGAAGAATTAAAATTTGAT AGGGAGAAGTAGAAGCCAATGTTGAAGAATTAAAATTTGAT < 41bp 0.428162620944616 0.742304372856998 NA NA prediction 0.484608745713995 Functional Gain - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20403742 chr11:20403741 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_22191 0 0 1 0 2 HTATIP2 chr11:20403724 3'AG 20403724 Downstream 18bp 20554 chr11 20403741 20403741 1 + G T UCEC 20403742 + 20403722 20403762 41 AGGGAGAAGTAGAAGCCAAGGTTGAAGAATTAAAATTTGAT AGGGAGAAGTAGAAGCCAATGTTGAAGAATTAAAATTTGAT < 41bp 0.428162620944616 0.742304372856998 NA NA prediction 0.484608745713995 Functional Gain - HTATIP2 ENSG00000109854 CDS Human protein_coding chr11:20403742 chr11:20403741 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_22191 0 0 1 0 2 HTATIP2 chr11:20403785 5'GT 20403785 Upstream 45bp 20555 chr1 57372420 57372420 1 + G T UCEC 57372421 + 57372401 57372441 41 CAAAATAAATGTTGGTGGAGGTTTATCAGGAGACCATTGTA CAAAATAAATGTTGGTGGATGTTTATCAGGAGACCATTGTA < 41bp 0.431102223364892 0.742298504232102 NA NA prediction 0.484597008464204 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57372421 chr1:57372420 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_22192 0 0 0 0 1 C8A chr1:57372340 3'AG 57372340 Downstream 81bp 20556 chr8 133851666 133851666 1 + G T UCEC 133851667 + 133851647 133851687 41 CAAAATATCGTTATGATAAGGAGTGGTTGAATAATGGGAGA CAAAATATCGTTATGATAATGAGTGGTTGAATAATGGGAGA < 41bp 0.433844550821804 0.742291708200068 NA NA prediction 0.484583416400135 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133851667 chr8:133851666 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22193 0 0 1 0 1 PHF20L1 chr8:133851632 3'AG 133851632 Downstream 35bp 20557 chr10 1149549 1149549 1 + G T LUSC 1149550 + 1149530 1149570 41 CTTTGGCAGCAGATATCTGGGGAAGATGAAGTAGAGTGCTC CTTTGGCAGCAGATATCTGTGGAAGATGAAGTAGAGTGCTC < 41bp 0.398051714565752 0.742285754122664 NA NA prediction 0.484571508245329 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1149550 chr10:1149549 nonsynonymous SNV 0.264 1 20 hm7G_associated_SNPs_22194 0 0 1 0 2 WDR37 chr10:1149539 3'AG 1149539 Downstream 11bp 20558 chr10 1149549 1149549 1 + G T LUSC 1149550 + 1149530 1149570 41 CTTTGGCAGCAGATATCTGGGGAAGATGAAGTAGAGTGCTC CTTTGGCAGCAGATATCTGTGGAAGATGAAGTAGAGTGCTC < 41bp 0.398051714565752 0.742285754122664 NA NA prediction 0.484571508245329 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1149550 chr10:1149549 nonsynonymous SNV 0.264 1 20 hm7G_associated_SNPs_22194 0 0 1 0 2 WDR37 chr10:1149542 3'AG 1149542 Downstream 8bp 20559 chr4 47548644 47548644 1 + G T LUSC 47548645 + 47548625 47548665 41 GCTTTTTATCCCACAGCCAGGAGGTTGGAGTCCTATCAGGA GCTTTTTATCCCACAGCCATGAGGTTGGAGTCCTATCAGGA < 41bp 0.409705274944387 0.742278082894844 NA NA prediction 0.484556165789689 Functional Gain - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47548645 chr4:47548644 nonsynonymous SNV 0.960 2 20 hm7G_associated_SNPs_22196 0 0 0 0 1 ATP10D chr4:47548641 3'AG 47548641 Downstream 4bp 20560 chr7 30911907 30911907 1 + G T LUAD 30911908 + 30911888 30911928 41 CCACCTGATTGGAGCACATGGCTACTGTACACAGGTCAGGG CCACCTGATTGGAGCACATTGCTACTGTACACAGGTCAGGG < 41bp 0.62076142526939 0.863027637047559 NA NA prediction 0.484532423556338 Functional Gain - MINDY4 ENSG00000106125;ENSG00000250424 CDS Human other chr7:30911908 chr7:30911907 nonsynonymous SNV 0.887 0 20 hm7G_associated_SNPs_22197 0 0 0 0 2 MINDY4 chr7:30911858 3'AG 30911858 Downstream 50bp 20561 chr7 30911907 30911907 1 + G T LUAD 30911908 + 30911888 30911928 41 CCACCTGATTGGAGCACATGGCTACTGTACACAGGTCAGGG CCACCTGATTGGAGCACATTGCTACTGTACACAGGTCAGGG < 41bp 0.62076142526939 0.863027637047559 NA NA prediction 0.484532423556338 Functional Gain - MINDY4 ENSG00000106125;ENSG00000250424 CDS Human other chr7:30911908 chr7:30911907 nonsynonymous SNV 0.887 0 20 hm7G_associated_SNPs_22197 0 0 0 0 2 MINDY4 chr7:30911921 5'GT 30911921 Upstream 15bp 20562 chr3 159708075 159708075 1 + G T LIHC 159708076 + 159708056 159708096 41 ACTCCCAAAACCTGCTGAGGGCCGTCAGCAACATGCTCCAG ACTCCCAAAACCTGCTGAGTGCCGTCAGCAACATGCTCCAG < 41bp 0.636412082767822 0.878661439336016 NA NA prediction 0.484498713136389 Functional Gain - IL12A ENSG00000168811 CDS Human protein_coding chr3:159708076 chr3:159708075 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_22199 0 0 0 0 1 IL12A chr3:159708099 5'GT 159708099 Upstream 25bp 20563 chr22 26690378 26690378 1 + G T LUAD 26690379 + 26690359 26690399 41 ACAGTCTACACTGGCTATGGGGTGGAGCTCCAGGTAACCCC ACAGTCTACACTGGCTATGTGGTGGAGCTCCAGGTAACCCC < 41bp 0.402868567328054 0.742245304737436 NA NA prediction 0.484490609474872 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26690379 chr22:26690378 nonsynonymous SNV 0.852 3 20 hm7G_associated_SNPs_22200 0 0 0 0 1 SEZ6L chr22:26690391 5'GT 26690391 Upstream 14bp 20564 chr9 35398978 35398978 1 + G T ESCA 35398979 + 35398959 35398999 41 CAGACGCCAGGGCCTCAGCGGCTCAGGATGCAGATAGCGTA CAGACGCCAGGGCCTCAGCTGCTCAGGATGCAGATAGCGTA < 41bp 0.395838764017856 0.742230298408362 NA NA prediction 0.484460596816724 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35398979 chr9:35398978 synonymous SNV . 0 20 hm7G_associated_SNPs_22201 0 0 1 0 2 UNC13B chr9:35398879 3'AG 35398879 Downstream 100bp 20565 chr9 35398978 35398978 1 + G T ESCA 35398979 + 35398959 35398999 41 CAGACGCCAGGGCCTCAGCGGCTCAGGATGCAGATAGCGTA CAGACGCCAGGGCCTCAGCTGCTCAGGATGCAGATAGCGTA < 41bp 0.395838764017856 0.742230298408362 NA NA prediction 0.484460596816724 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35398979 chr9:35398978 synonymous SNV . 0 20 hm7G_associated_SNPs_22201 0 0 1 0 2 UNC13B chr9:35399031 5'GT 35399031 Upstream 54bp 20566 chr6 42044971 42044971 1 + G T COAD 42044972 + 42044952 42044992 41 AAGAAGCCCAAGATCCGCAGGAAGAAGTGAGTTGGAGGCTG AAGAAGCCCAAGATCCGCATGAAGAAGTGAGTTGGAGGCTG < 41bp 0.640551370404499 0.882738461082712 NA NA prediction 0.484374181356426 Functional Gain - TAF8 ENSG00000137413 CDS Human protein_coding chr6:42044972 chr6:42044971 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_22203 0 0 1 3 1 TAF8 chr6:42044977 5'GT 42044977 Upstream 7bp 20567 chr12 113307801 113307801 1 + G T UCEC 113307802 + 113307782 113307822 41 GCCGAGATTCAGAGAGCTGGGACCACAGTGGGGGTGCTGGA GCCGAGATTCAGAGAGCTGTGACCACAGTGGGGGTGCTGGA < 41bp 0.642034529928703 0.884216179100171 NA NA prediction 0.484363298342937 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113307802 chr12:113307801 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_22204 0 0 0 0 1 RPH3A chr12:113307844 5'GT 113307844 Upstream 44bp 20568 chr4 37432310 37432310 1 + G T UCEC 37432311 + 37432291 37432331 41 TGGAGACCAAGTTGCTGGAGGAGTGGTACTGTCGAGATGAG TGGAGACCAAGTTGCTGGATGAGTGGTACTGTCGAGATGAG < 41bp 0.416449751277641 0.742173003407916 NA NA prediction 0.484346006815833 Functional Gain - NWD2 ENSG00000174145 CDS Human protein_coding chr4:37432311 chr4:37432310 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_22206 0 0 0 0 1 NWD2 chr4:37432397 5'GT 37432397 Upstream 88bp 20569 chr10 23321905 23321905 1 + G T UCEC 23321906 + 23321886 23321926 41 ATCCAATGTTATACCGATTGGACATGTCAAAAAAGGAATCT ATCCAATGTTATACCGATTTGACATGTCAAAAAAGGAATCT < 41bp 0.424300983677706 0.742170319929854 NA NA prediction 0.484340639859709 Functional Gain - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23321906 chr10:23321905 stopgain 0.875 1 20 hm7G_associated_SNPs_22207 0 0 0 0 1 ARMC3 chr10:23321952 5'GT 23321952 Upstream 48bp 20570 chr17 7359980 7359980 1 + G T SKCM 7359981 + 7359961 7360001 41 CATCATCTTCACCAGCGTTGGGACCCTAGTCATCTTCCTGG CATCATCTTCACCAGCGTTTGGACCCTAGTCATCTTCCTGG < 41bp 0.422275595611017 0.742162954819189 NA NA prediction 0.484325909638379 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7359981 chr17:7359980 nonsynonymous SNV 0.944 5 20 hm7G_associated_SNPs_22208 0 0 0 0 1 CHRNB1 chr17:7359902 3'AG 7359902 Downstream 79bp 20571 chrX 35989995 35989995 1 + G T COAD 35989996 + 35989976 35990016 41 TTTTTTACAGGTTCTCAAAGGACTTAAATCAGAACCATCCA TTTTTTACAGGTTCTCAAATGACTTAAATCAGAACCATCCA < 41bp 0.435811675429207 0.742147149051597 NA NA prediction 0.484294298103194 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35989996 chrX:35989995 stopgain 0.012 0 20 hm7G_associated_SNPs_22209 0 0 0 0 2 CFAP47 chrX:35989986 3'AG 35989986 Downstream 10bp 20572 chrX 35989995 35989995 1 + G T COAD 35989996 + 35989976 35990016 41 TTTTTTACAGGTTCTCAAAGGACTTAAATCAGAACCATCCA TTTTTTACAGGTTCTCAAATGACTTAAATCAGAACCATCCA < 41bp 0.435811675429207 0.742147149051597 NA NA prediction 0.484294298103194 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35989996 chrX:35989995 stopgain 0.012 0 20 hm7G_associated_SNPs_22209 0 0 0 0 2 CFAP47 chrX:35990082 5'GT 35990082 Upstream 88bp 20573 chr11 237093 237093 1 + G T LUAD 237094 + 237074 237114 41 CAGCAGAGCCAGAACTCCGGGCCCGGGCAGCCCGCTGTGTG CAGCAGAGCCAGAACTCCGTGCCCGGGCAGCCCGCTGTGTG < 41bp 0.640028559572857 0.882173450773978 NA NA prediction 0.484289782402242 Functional Gain - PSMD13 ENSG00000185627 CDS Human protein_coding chr11:237094 chr11:237093 nonsynonymous SNV 0.930 1 20 hm7G_associated_SNPs_22210 0 0 1 0 1 PSMD13 chr11:237144 5'GT 237144 Upstream 52bp 20574 chr12 119591388 119591388 1 + G T UCEC 119591389 + 119591369 119591409 41 TCCTCCAAGTCTGGCAAGAGGAGCCCGCCCAGCAGAAGCTC TCCTCCAAGTCTGGCAAGATGAGCCCGCCCAGCAGAAGCTC < 41bp 0.397358243848553 0.742135347687984 NA NA prediction 0.484270695375968 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119591389 chr12:119591388 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_22213 0 0 0 0 2 SRRM4 chr12:119591344 3'AG 119591344 Downstream 45bp 20575 chr12 119591388 119591388 1 + G T UCEC 119591389 + 119591369 119591409 41 TCCTCCAAGTCTGGCAAGAGGAGCCCGCCCAGCAGAAGCTC TCCTCCAAGTCTGGCAAGATGAGCCCGCCCAGCAGAAGCTC < 41bp 0.397358243848553 0.742135347687984 NA NA prediction 0.484270695375968 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119591389 chr12:119591388 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_22213 0 0 0 0 2 SRRM4 chr12:119591454 5'GT 119591454 Upstream 67bp 20576 chr13 25284950 25284950 1 + G T LUAD 25284951 + 25284931 25284971 41 AATAAAGTCATCTGGGTGGGGATCACCTCACAGATCATCAT AATAAAGTCATCTGGGTGGTGATCACCTCACAGATCATCAT < 41bp 0.631427628928856 0.873551936674956 NA NA prediction 0.484248615492199 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25284951 chr13:25284950 nonsynonymous SNV 0.953 5 20 hm7G_associated_SNPs_22214 0 0 0 0 2 ATP12A chr13:25284930 3'AG 25284930 Downstream 21bp 20577 chr13 25284950 25284950 1 + G T LUAD 25284951 + 25284931 25284971 41 AATAAAGTCATCTGGGTGGGGATCACCTCACAGATCATCAT AATAAAGTCATCTGGGTGGTGATCACCTCACAGATCATCAT < 41bp 0.631427628928856 0.873551936674956 NA NA prediction 0.484248615492199 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25284951 chr13:25284950 nonsynonymous SNV 0.953 5 20 hm7G_associated_SNPs_22214 0 0 0 0 2 ATP12A chr13:25285031 5'GT 25285031 Upstream 82bp 20578 chr6 110059528 110059528 1 + G T UCEC 110059529 + 110059509 110059549 41 ACAGACTTTTATTTTTCAGGGGTATTTGGGATCTGTAGTGA ACAGACTTTTATTTTTCAGTGGTATTTGGGATCTGTAGTGA < 41bp 0.422091070441682 0.742121415247896 NA NA prediction 0.484242830495792 Functional Gain - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059529 chr6:110059528 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22215 0 0 1 0 1 FIG4 chr6:110059528 3'AG 110059528 Downstream 1bp 20579 chr10 135122944 135122944 1 + G T LUSC 135122945 + 135122925 135122965 41 AGGACGTGATCATGCAGGTGGCCGACGTGCCTGAGAAGCCC AGGACGTGATCATGCAGGTTGCCGACGTGCCTGAGAAGCCC < 41bp 0.646297044771932 0.888414102839017 NA NA prediction 0.484234116134171 Functional Gain - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135122945 chr10:135122944 synonymous SNV . 0 20 hm7G_associated_SNPs_22216 0 0 1 0 1 ZNF511 chr10:135122967 5'GT 135122967 Upstream 24bp 20580 chr3 44283796 44283796 1 + G T LUSC 44283797 + 44283777 44283817 41 GCAAGGCGTCAGGTGGAGGGGCGCAGGGGCCCGGTGAGCCC GCAAGGCGTCAGGTGGAGGTGCGCAGGGGCCCGGTGAGCCC < 41bp 0.42033811055097 0.742114492432204 NA NA prediction 0.484228984864409 Functional Gain - TOPAZ1 ENSG00000173769 CDS Human protein_coding chr3:44283797 chr3:44283796 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_22218 0 0 0 0 1 TOPAZ1 chr3:44283891 5'GT 44283891 Upstream 96bp 20581 chr16 67575783 67575783 1 + G T HNSC 67575784 + 67575764 67575804 41 TCTCAGAACATGCTGCGACGGCAGGAGGAGCTGGAGAATGG TCTCAGAACATGCTGCGACTGCAGGAGGAGCTGGAGAATGG < 41bp 0.637391808068067 0.879503878424865 NA NA prediction 0.484224140713595 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575784 chr16:67575783 nonsynonymous SNV 0.937 3 20 hm7G_associated_SNPs_22219 0 0 0 0 1 RIPOR1 chr16:67575770 3'AG 67575770 Downstream 14bp 20582 chr6 36104684 36104684 1 + G T HNSC 36104685 + 36104665 36104705 41 GGTCTGTGGGCTGTATCATGGCAGAGATGCTGACAGGGAAA GGTCTGTGGGCTGTATCATTGCAGAGATGCTGACAGGGAAA < 41bp 0.636089641493206 0.878130591975695 NA NA prediction 0.484081900964979 Functional Gain - MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36104685 chr6:36104684 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22225 0 0 1 0 2 MAPK13 chr6:36104656 3'AG 36104656 Downstream 29bp 20583 chr6 36104684 36104684 1 + G T HNSC 36104685 + 36104665 36104705 41 GGTCTGTGGGCTGTATCATGGCAGAGATGCTGACAGGGAAA GGTCTGTGGGCTGTATCATTGCAGAGATGCTGACAGGGAAA < 41bp 0.636089641493206 0.878130591975695 NA NA prediction 0.484081900964979 Functional Gain - MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36104685 chr6:36104684 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22225 0 0 1 0 2 MAPK13 chr6:36104727 5'GT 36104727 Upstream 44bp 20584 chr1 241959637 241959637 1 + G T CESC 241959638 + 241959618 241959658 41 CTCTTCAGATGGCATTACAGGAAAGAAGAAGGGAGGTCATG CTCTTCAGATGGCATTACATGAAAGAAGAAGGGAGGTCATG < 41bp 0.622677034018127 0.864675815699682 NA NA prediction 0.48399756336311 Functional Gain - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241959638 chr1:241959637 stopgain 0.002 0 20 hm7G_associated_SNPs_22227 0 0 0 0 1 WDR64 chr1:241959559 3'AG 241959559 Downstream 79bp 20585 chr6 108645217 108645217 1 + G T UCEC 108645218 + 108645198 108645238 41 ATTACACGAGGACCTTAAAGGATACAATATAGAGGCAGAAG ATTACACGAGGACCTTAAATGATACAATATAGAGGCAGAAG < 41bp 0.629938492065423 0.871922776228294 NA NA prediction 0.483968568325741 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108645218 chr6:108645217 stopgain 0.996 1 20 hm7G_associated_SNPs_22229 0 0 1 0 1 AFG1L chr6:108645252 5'GT 108645252 Upstream 36bp 20586 chr2 31489099 31489099 1 + G T STAD 31489100 + 31489080 31489120 41 CGCTGAAGAGCAAGCTGCTGGAGGTAGTGGACGACATGCTG CGCTGAAGAGCAAGCTGCTTGAGGTAGTGGACGACATGCTG < 41bp 0.637301827891294 0.879285221857127 NA NA prediction 0.483966787931667 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31489100 chr2:31489099 synonymous SNV . 0 20 hm7G_associated_SNPs_22230 0 0 0 0 1 EHD3 chr2:31489043 3'AG 31489043 Downstream 57bp 20587 chr2 75081576 75081576 1 + G T OV 75081577 + 75081557 75081597 41 TGTGAGGTCCACTCCAGATGGGACAGGTACTGCATCTGGGG TGTGAGGTCCACTCCAGATTGGACAGGTACTGCATCTGGGG < 41bp 0.393745400625037 0.741977095867627 NA NA prediction 0.483954191735254 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75081577 chr2:75081576 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_22231 0 0 1 0 1 HK2 chr2:75081582 5'GT 75081582 Upstream 7bp 20588 chrX 54569759 54569759 1 + G T LUSC 54569760 + 54569740 54569780 41 GCAACAAGAAGCTGGTCCTGGTCTTGAACAAGATTGGTGGG GCAACAAGAAGCTGGTCCTTGTCTTGAACAAGATTGGTGGG < 41bp 0.410857609086305 0.741969635406813 NA NA prediction 0.483939270813625 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54569760 chrX:54569759 synonymous SNV . 0 20 hm7G_associated_SNPs_22232 0 0 1 0 1 GNL3L chrX:54569775 5'GT 54569775 Upstream 17bp 20589 chr16 88037984 88037984 1 + G T UCEC 88037985 + 88037965 88038005 41 GAAGACCCCTTGAGCAACAGGGCACCGGATTCCCTGGAAAA GAAGACCCCTTGAGCAACATGGCACCGGATTCCCTGGAAAA < 41bp 0.395261525155158 0.741955778852496 NA NA prediction 0.483911557704992 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88037985 chr16:88037984 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22233 0 0 0 0 1 BANP chr16:88038017 5'GT 88038017 Upstream 34bp 20590 chr8 75263638 75263638 1 + G T UCEC 75263639 + 75263619 75263659 41 AGTGCCTGTCCTTATCCACGGGGAAAACATAATTTGTGAGG AGTGCCTGTCCTTATCCACTGGGAAAACATAATTTGTGAGG < 41bp 0.413170359123312 0.741909179644693 NA NA prediction 0.483818359289387 Functional Gain - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75263639 chr8:75263638 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22239 0 0 0 0 1 GDAP1 chr8:75263701 5'GT 75263701 Upstream 64bp 20591 chr19 36109792 36109792 1 + G T PAAD 36109793 + 36109773 36109813 41 TCCACTTGCCCTGCAGGCAGGTGCTGATACTGGGGCTTCGG TCCACTTGCCCTGCAGGCATGTGCTGATACTGGGGCTTCGG < 41bp 0.633705245577598 0.875595481267693 NA NA prediction 0.483780471380191 Functional Gain - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36109793 chr19:36109792 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_22240 0 0 1 0 1 HAUS5 chr19:36109789 3'AG 36109789 Downstream 4bp 20592 chr1 77752710 77752710 1 + G T LUAD 77752711 + 77752691 77752731 41 ACAAAAAGTAAAGGAACTGGGTGGCTGTGACAAGGTGAAAT ACAAAAAGTAAAGGAACTGTGTGGCTGTGACAAGGTGAAAT < 41bp 0.424938004269128 0.741883889884759 NA NA prediction 0.483767779769518 Functional Gain - AK5 ENSG00000154027 CDS Human other chr1:77752711 chr1:77752710 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_22242 0 0 0 0 2 AK5;AK5 chr1:77752626 3'AG 77752626 Downstream 85bp 20593 chr1 77752710 77752710 1 + G T LUAD 77752711 + 77752691 77752731 41 ACAAAAAGTAAAGGAACTGGGTGGCTGTGACAAGGTGAAAT ACAAAAAGTAAAGGAACTGTGTGGCTGTGACAAGGTGAAAT < 41bp 0.424938004269128 0.741883889884759 NA NA prediction 0.483767779769518 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:77752711 chr1:77752710 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_22242 0 0 0 0 2 AK5 chr1:77752628 3'AG 77752628 Downstream 83bp 20594 chr6 39869086 39869086 1 + G T HNSC 39869087 + 39869067 39869107 41 TCCCTTGACAGTTCGCCAAGGCCTTGATGCACTTCGGGGAG TCCCTTGACAGTTCGCCAATGCCTTGATGCACTTCGGGGAG < 41bp 0.398969453865906 0.741839349459006 NA NA prediction 0.483678698918012 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39869087 chr6:39869086 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_22243 0 0 0 0 1 DAAM2 chr6:39869078 3'AG 39869078 Downstream 9bp 20595 chr5 2752850 2752850 1 + G T LUSC 2752851 + 2752831 2752871 41 AGCTCAGGTTGGCGCCGCCGGTGCAGTGGGCATTACAGGTA AGCTCAGGTTGGCGCCGCCTGTGCAGTGGGCATTACAGGTA < 41bp 0.419464964923836 0.741836262393042 NA NA prediction 0.483672524786085 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2752851 chr5:2752850 synonymous SNV . 0 20 hm7G_associated_SNPs_22244 0 0 0 1 2 C5orf38 chr5:2752794 3'AG 2752794 Downstream 57bp 20596 chr5 2752850 2752850 1 + G T LUSC 2752851 + 2752831 2752871 41 AGCTCAGGTTGGCGCCGCCGGTGCAGTGGGCATTACAGGTA AGCTCAGGTTGGCGCCGCCTGTGCAGTGGGCATTACAGGTA < 41bp 0.419464964923836 0.741836262393042 NA NA prediction 0.483672524786085 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2752851 chr5:2752850 synonymous SNV . 0 20 hm7G_associated_SNPs_22244 0 0 0 1 2 C5orf38 chr5:2752868 5'GT 2752868 Upstream 19bp 20597 chr9 12708981 12708981 1 + G T CHOL 12708982 + 12708962 12709002 41 TTCCTTTCCAAATAGGTCGGGAGTTTAGTGTACCTGAGATA TTCCTTTCCAAATAGGTCGTGAGTTTAGTGTACCTGAGATA < 41bp 0.453079062121461 0.741834287753427 NA NA prediction 0.483668575506854 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12708982 chr9:12708981 synonymous SNV . 0 20 hm7G_associated_SNPs_22245 0 0 0 0 1 TYRP1 chr9:12708977 3'AG 12708977 Downstream 5bp 20598 chr15 41023275 41023275 1 + G T UCEC 41023276 + 41023256 41023296 41 GTATCTGAGGAAAGGAAGAGGGGAAACCAGAATCTGCAAAA GTATCTGAGGAAAGGAAGATGGGAAACCAGAATCTGCAAAA < 41bp 0.625328783516411 0.867155372734399 NA NA prediction 0.483653178435976 Functional Gain - RAD51 ENSG00000051180 CDS Human protein_coding chr15:41023276 chr15:41023275 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22246 0 0 1 0 1 RAD51 chr15:41023253 3'AG 41023253 Downstream 23bp 20599 chr16 28950264 28950264 1 + G T COAD 28950265 + 28950245 28950285 41 GGGAGGAGGGGGCCGCATGGGCACCTGGAGCACCAGGTGAT GGGAGGAGGGGGCCGCATGTGCACCTGGAGCACCAGGTGAT < 41bp 0.646802744391146 0.88860780088165 NA NA prediction 0.48361011298101 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28950265 chr16:28950264 nonsynonymous SNV 0.075 3 20 hm7G_associated_SNPs_22248 0 0 0 0 2 CD19 chr16:28950193 3'AG 28950193 Downstream 72bp 20600 chr16 28950264 28950264 1 + G T COAD 28950265 + 28950245 28950285 41 GGGAGGAGGGGGCCGCATGGGCACCTGGAGCACCAGGTGAT GGGAGGAGGGGGCCGCATGTGCACCTGGAGCACCAGGTGAT < 41bp 0.646802744391146 0.88860780088165 NA NA prediction 0.48361011298101 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28950265 chr16:28950264 nonsynonymous SNV 0.075 3 20 hm7G_associated_SNPs_22248 0 0 0 0 2 CD19 chr16:28950299 5'GT 28950299 Upstream 36bp 20601 chr4 159812659 159812659 1 + G T rs550559005 159812660 + 159812640 159812680 41 ATCGCAGACACGGATAAATGGAGTGTGCAGGTAGCTACAAG ATCGCAGACACGGATAAATTGAGTGTGCAGGTAGCTACAAG < 41bp 0.40782453412791 0.741751881095709 NA NA prediction 0.483503762191419 Functional Gain - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159812660 chr4:159812659 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_22252 0 0 1 0 1 FNIP2 chr4:159812598 3'AG 159812598 Downstream 62bp 20602 chr11 76853772 76853772 1 + G T UCEC 76853773 + 76853753 76853793 41 AGGGGGACCATGTGTGGATGGACCTGAGATTGGGGCAGGAG AGGGGGACCATGTGTGGATTGACCTGAGATTGGGGCAGGAG < 41bp 0.395857011788905 0.741750632122108 NA NA prediction 0.483501264244217 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76853773 chr11:76853772 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22253 0 0 1 0 2 MYO7A chr11:76853755 3'AG 76853755 Downstream 18bp 20603 chr11 76853772 76853772 1 + G T UCEC 76853773 + 76853753 76853793 41 AGGGGGACCATGTGTGGATGGACCTGAGATTGGGGCAGGAG AGGGGGACCATGTGTGGATTGACCTGAGATTGGGGCAGGAG < 41bp 0.395857011788905 0.741750632122108 NA NA prediction 0.483501264244217 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76853773 chr11:76853772 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22253 0 0 1 0 2 MYO7A chr11:76853868 5'GT 76853868 Upstream 97bp 20604 chr17 27011886 27011886 1 + G T BLCA 27011887 + 27011867 27011907 41 ACCCTGTGTTCTGCGCCCTGGTCAATGGTGAAGGAGAAGTG ACCCTGTGTTCTGCGCCCTTGTCAATGGTGAAGGAGAAGTG < 41bp 0.402243276968435 0.741732990846859 NA NA prediction 0.483465981693718 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27011887 chr17:27011886 synonymous SNV . 0 20 hm7G_associated_SNPs_22255 0 0 1 0 1 SUPT6H chr17:27011862 3'AG 27011862 Downstream 25bp 20605 chr8 71593478 71593478 1 + G T HNSC 71593479 + 71593459 71593499 41 CAGTGTTTTAGTTATTCTTGGTTCAAGGCTGATTTAAAGAA CAGTGTTTTAGTTATTCTTTGTTCAAGGCTGATTTAAAGAA < 41bp 0.53323107404406 0.774958974790081 NA NA prediction 0.483455801492043 Functional Gain - XKR9 ENSG00000221947 CDS Human protein_coding chr8:71593479 chr8:71593478 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22256 0 0 0 0 1 XKR9 chr8:71593565 5'GT 71593565 Upstream 88bp 20606 chr9 95838183 95838183 1 + G T ESCA 95838184 + 95838164 95838204 41 TCCAACCACCAGATGGTGGGGTCTGGGCTCCTCACCTGCAC TCCAACCACCAGATGGTGGTGTCTGGGCTCCTCACCTGCAC < 41bp 0.398032890653463 0.741724041895041 NA NA prediction 0.483448083790083 Functional Gain - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95838184 chr9:95838183 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22257 0 0 0 0 1 SUSD3 chr9:95838254 5'GT 95838254 Upstream 72bp 20607 chr5 145641358 145641358 1 + G T UCEC 145641359 + 145641339 145641379 41 TCCTTCAACAGTGCACGGAGGTATCCAGAAGGTAATCTGGT TCCTTCAACAGTGCACGGATGTATCCAGAAGGTAATCTGGT < 41bp 0.619834337899415 0.861557304182417 NA NA prediction 0.483445932566005 Functional Gain - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641359 chr5:145641358 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_22258 0 0 1 0 1 RBM27 chr5:145641369 5'GT 145641369 Upstream 12bp 20608 chr12 56332317 56332317 1 + G T LUAD 56332318 + 56332298 56332338 41 CCTTCAAGCTGTACGACACGGACAGAAATGGGATCCTGGAC CCTTCAAGCTGTACGACACTGACAGAAATGGGATCCTGGAC < 41bp 0.496730510770975 0.741717642586339 NA NA prediction 0.483435285172677 Functional Gain - DGKA ENSG00000065357 CDS Human protein_coding chr12:56332318 chr12:56332317 synonymous SNV . 0 20 hm7G_associated_SNPs_22259 0 0 0 0 2 DGKA chr12:56332295 3'AG 56332295 Downstream 23bp 20609 chr12 56332317 56332317 1 + G T LUAD 56332318 + 56332298 56332338 41 CCTTCAAGCTGTACGACACGGACAGAAATGGGATCCTGGAC CCTTCAAGCTGTACGACACTGACAGAAATGGGATCCTGGAC < 41bp 0.496730510770975 0.741717642586339 NA NA prediction 0.483435285172677 Functional Gain - DGKA ENSG00000065357 CDS Human protein_coding chr12:56332318 chr12:56332317 synonymous SNV . 0 20 hm7G_associated_SNPs_22259 0 0 0 0 2 DGKA chr12:56332344 5'GT 56332344 Upstream 28bp 20610 chr6 158870156 158870156 1 + G T LGG 158870157 + 158870137 158870177 41 ACTACCCGATCTTCCTGGTGGAGGACAGCAGCGAGAGCGAC ACTACCCGATCTTCCTGGTTGAGGACAGCAGCGAGAGCGAC < 41bp 0.402661109419356 0.741708479777061 NA NA prediction 0.483416959554122 Functional Gain - TULP4 ENSG00000130338 CDS Human protein_coding chr6:158870157 chr6:158870156 synonymous SNV . 0 20 hm7G_associated_SNPs_22260 0 0 1 0 1 TULP4 chr6:158870208 5'GT 158870208 Upstream 53bp 20611 chr1 248039227 248039227 1 + G T LUAD 248039228 + 248039208 248039248 41 TAAAGCTGGATCCCGCCACGGCGCACCCGAGTCTGCTCTTG TAAAGCTGGATCCCGCCACTGCGCACCCGAGTCTGCTCTTG < 41bp 0.411465342781416 0.741706775870528 NA NA prediction 0.483413551741055 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039228 chr1:248039227 synonymous SNV . 0 20 hm7G_associated_SNPs_22261 0 0 0 0 1 TRIM58 chr1:248039202 3'AG 248039202 Downstream 26bp 20612 chr20 42885797 42885797 1 + G T HNSC 42885798 + 42885778 42885818 41 CCCTGGCGCCTGCAGGTGCGGCTGGTGATCGCCGAGAAGGG CCCTGGCGCCTGCAGGTGCTGCTGGTGATCGCCGAGAAGGG < 41bp 0.640369098392175 0.882073750925293 NA NA prediction 0.483409305066237 Functional Gain - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42885798 chr20:42885797 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22262 0 0 0 0 1 GDAP1L1 chr20:42885793 3'AG 42885793 Downstream 5bp 20613 chr7 89917620 89917620 1 + G T LIHC 89917621 + 89917601 89917641 41 CCCCAGGAAGTTACAGAGTGGCTTAGGCTATAATGTACTTC CCCCAGGAAGTTACAGAGTTGCTTAGGCTATAATGTACTTC < 41bp 0.629887445851019 0.871589529556278 NA NA prediction 0.483404167410519 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89917621 chr7:89917620 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_22263 0 0 0 0 2 CFAP69 chr7:89917548 3'AG 89917548 Downstream 73bp 20614 chr7 89917620 89917620 1 + G T LIHC 89917621 + 89917601 89917641 41 CCCCAGGAAGTTACAGAGTGGCTTAGGCTATAATGTACTTC CCCCAGGAAGTTACAGAGTTGCTTAGGCTATAATGTACTTC < 41bp 0.629887445851019 0.871589529556278 NA NA prediction 0.483404167410519 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89917621 chr7:89917620 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_22263 0 0 0 0 2 CFAP69 chr7:89917666 5'GT 89917666 Upstream 47bp 20615 chr3 119109747 119109747 1 + G T UCEC 119109748 + 119109728 119109768 41 CTAACCATCCTGCTCGCAAGGAAAGGAGGGAGAACAGCCTG CTAACCATCCTGCTCGCAATGAAAGGAGGGAGAACAGCCTG < 41bp 0.648454560516684 0.890150517300849 NA NA prediction 0.48339191356833 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119109748 chr3:119109747 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_22265 0 0 0 0 1 ARHGAP31 chr3:119109830 5'GT 119109830 Upstream 84bp 20616 chr1 45091997 45091997 1 + G T LUAD 45091998 + 45091978 45092018 41 TTGTCTGCTTCCATCAAGAGGGAAGGAGAGTCTCCAACGGC TTGTCTGCTTCCATCAAGATGGAAGGAGAGTCTCCAACGGC < 41bp 0.399083143142248 0.741692157970198 NA NA prediction 0.483384315940397 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45091998 chr1:45091997 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22266 0 0 0 0 2 RNF220 chr1:45091969 3'AG 45091969 Downstream 29bp 20617 chr1 45091997 45091997 1 + G T LUAD 45091998 + 45091978 45092018 41 TTGTCTGCTTCCATCAAGAGGGAAGGAGAGTCTCCAACGGC TTGTCTGCTTCCATCAAGATGGAAGGAGAGTCTCCAACGGC < 41bp 0.399083143142248 0.741692157970198 NA NA prediction 0.483384315940397 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45091998 chr1:45091997 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22266 0 0 0 0 2 RNF220 chr1:45092070 5'GT 45092070 Upstream 74bp 20618 chr7 87507462 87507462 1 + G T SARC 87507463 + 87507443 87507483 41 CCAAATGTAAGCCACTTTGGGGAAAAGTATTTTACCTTGAC CCAAATGTAAGCCACTTTGTGGAAAAGTATTTTACCTTGAC < 41bp 0.430425502358865 0.741690074304358 NA NA prediction 0.483380148608716 Functional Gain - DBF4 ENSG00000006634 CDS Human protein_coding chr7:87507463 chr7:87507462 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_22267 0 0 0 0 2 DBF4 chr7:87507368 3'AG 87507368 Downstream 95bp 20619 chr7 87507462 87507462 1 + G T SARC 87507463 + 87507443 87507483 41 CCAAATGTAAGCCACTTTGGGGAAAAGTATTTTACCTTGAC CCAAATGTAAGCCACTTTGTGGAAAAGTATTTTACCTTGAC < 41bp 0.430425502358865 0.741690074304358 NA NA prediction 0.483380148608716 Functional Gain - DBF4 ENSG00000006634 CDS Human protein_coding chr7:87507463 chr7:87507462 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_22267 0 0 0 0 2 DBF4 chr7:87507540 5'GT 87507540 Upstream 79bp 20620 chr20 37570769 37570769 1 + G T UCEC 37570770 + 37570750 37570790 41 TTCATCCTGAACAGGAAAAGGTTTGTGGTACACTATATCCA TTCATCCTGAACAGGAAAATGTTTGTGGTACACTATATCCA < 41bp 0.452251059907371 0.741684816160252 NA NA prediction 0.483369632320504 Functional Gain - FAM83D ENSG00000101447 CDS Human protein_coding chr20:37570770 chr20:37570769 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22268 0 0 1 0 1 FAM83D chr20:37570769 5'GT 37570769 Upstream 1bp 20621 chr5 154252160 154252160 1 + G T LUSC 154252161 + 154252141 154252181 41 GGATTGGAAGGCAGCACCAGGCAGGCTCAGACTCACTGCTG GGATTGGAAGGCAGCACCATGCAGGCTCAGACTCACTGCTG < 41bp 0.642198466170541 0.883861365626051 NA NA prediction 0.48332579891102 Functional Gain - CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154252161 chr5:154252160 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_22269 0 0 1 0 2 CNOT8 chr5:154252101 3'AG 154252101 Downstream 60bp 20622 chr5 154252160 154252160 1 + G T LUSC 154252161 + 154252141 154252181 41 GGATTGGAAGGCAGCACCAGGCAGGCTCAGACTCACTGCTG GGATTGGAAGGCAGCACCATGCAGGCTCAGACTCACTGCTG < 41bp 0.642198466170541 0.883861365626051 NA NA prediction 0.48332579891102 Functional Gain - CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154252161 chr5:154252160 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_22269 0 0 1 0 2 CNOT8 chr5:154252211 5'GT 154252211 Upstream 52bp 20623 chr1 248058891 248058891 1 + G T COAD 248058892 + 248058872 248058912 41 GTTCAGCAGCAGTAGAGATGGATGGAACCAATGGCAGCACC GTTCAGCAGCAGTAGAGATTGATGGAACCAATGGCAGCACC < 41bp 0.443197062140852 0.741662217162263 NA NA prediction 0.483324434324526 Functional Gain - OR2W3 ENSG00000238243 CDS Human protein_coding chr1:248058892 chr1:248058891 nonsynonymous SNV 0.364 1 20 hm7G_associated_SNPs_22270 0 0 0 0 1 OR2W3 chr1:248058859 3'AG 248058859 Downstream 33bp 20624 chr3 38524682 38524682 1 + G T UCEC 38524683 + 38524663 38524703 41 GCTGGGACCATGATGCAGAGGCTCGCTTGTCCGCGGGCTGT GCTGGGACCATGATGCAGATGCTCGCTTGTCCGCGGGCTGT < 41bp 0.425094466747374 0.74166126168436 NA NA prediction 0.48332252336872 Functional Gain - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38524683 chr3:38524682 nonsynonymous SNV 0.961 2 20 hm7G_associated_SNPs_22271 0 0 1 0 1 ACVR2B chr3:38524629 3'AG 38524629 Downstream 54bp 20625 chr3 51864504 51864504 1 + G T LUSC 51864505 + 51864485 51864525 41 CGTGGGGTCCTGGTGCGCAGGACCCTGCTGGTTGCTGCCCT CGTGGGGTCCTGGTGCGCATGACCCTGCTGGTTGCTGCCCT < 41bp 0.634216122180244 0.875866953187719 NA NA prediction 0.48330166201495 Functional Gain - IQCF3 ENSG00000229972 CDS Human protein_coding chr3:51864505 chr3:51864504 nonsynonymous SNV 0.016 3 20 hm7G_associated_SNPs_22272 0 0 0 1 1 IQCF3 chr3:51864419 3'AG 51864419 Downstream 86bp 20626 chr8 17815110 17815110 1 + G T COAD 17815111 + 17815091 17815131 41 CACAAGGTGAAGATGATGAGGAGGAGGAGGAAGAAGCAGAA CACAAGGTGAAGATGATGATGAGGAGGAGGAAGAAGCAGAA < 41bp 0.626960351970512 0.868586958109899 NA NA prediction 0.483253212278774 Functional Gain - PCM1 ENSG00000078674 CDS Human protein_coding chr8:17815111 chr8:17815110 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_22276 0 0 1 0 2 PCM1 chr8:17815046 3'AG 17815046 Downstream 65bp 20627 chr8 17815110 17815110 1 + G T COAD 17815111 + 17815091 17815131 41 CACAAGGTGAAGATGATGAGGAGGAGGAGGAAGAAGCAGAA CACAAGGTGAAGATGATGATGAGGAGGAGGAAGAAGCAGAA < 41bp 0.626960351970512 0.868586958109899 NA NA prediction 0.483253212278774 Functional Gain - PCM1 ENSG00000078674 CDS Human protein_coding chr8:17815111 chr8:17815110 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_22276 0 0 1 0 2 PCM1 chr8:17815049 3'AG 17815049 Downstream 62bp 20628 chr1 186908191 186908191 1 + G T UCEC 186908192 + 186908172 186908212 41 TTCCAGAGAAAGGGCCAGAGGAGATTAATGAAGAACTAATG TTCCAGAGAAAGGGCCAGATGAGATTAATGAAGAACTAATG < 41bp 0.622482095881932 0.86409949324019 NA NA prediction 0.483234794716517 Functional Gain - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186908192 chr1:186908191 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_22278 0 0 0 0 1 PLA2G4A chr1:186908140 3'AG 186908140 Downstream 52bp 20629 chr16 67319226 67319226 1 + G T LUAD 67319227 + 67319207 67319247 41 TGGCAGAGATGGTGGCCACGGAGCGGGAGTATGTCCGGGCT TGGCAGAGATGGTGGCCACTGAGCGGGAGTATGTCCGGGCT < 41bp 0.644780799980473 0.88637710785143 NA NA prediction 0.483192615741914 Functional Gain - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67319227 chr16:67319226 synonymous SNV . 0 20 hm7G_associated_SNPs_22280 0 0 1 0 1 PLEKHG4 chr16:67319193 3'AG 67319193 Downstream 34bp 20630 chr20 29623193 29623193 1 + G T LUAD 29623194 + 29623174 29623214 41 TAGCCATTGAAATGGATGAGGGAACCTATATACATGCACTC TAGCCATTGAAATGGATGATGGAACCTATATACATGCACTC < 41bp 0.410653751342912 0.741595878623699 NA NA prediction 0.483191757247398 Functional Gain - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29623194 chr20:29623193 nonsynonymous SNV 0.885 1 20 hm7G_associated_SNPs_22281 0 0 1 0 2 FRG1BP;FRG1DP chr20:29623129 3'AG 29623129 Downstream 65bp 20631 chr20 29623193 29623193 1 + G T LUAD 29623194 + 29623174 29623214 41 TAGCCATTGAAATGGATGAGGGAACCTATATACATGCACTC TAGCCATTGAAATGGATGATGGAACCTATATACATGCACTC < 41bp 0.410653751342912 0.741595878623699 NA NA prediction 0.483191757247398 Functional Gain - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29623194 chr20:29623193 nonsynonymous SNV 0.885 1 20 hm7G_associated_SNPs_22281 0 0 1 0 2 FRG1BP;FRG1DP chr20:29623254 5'GT 29623254 Upstream 62bp 20632 chr6 28094583 28094583 1 + G T LUSC 28094584 + 28094564 28094604 41 CCAGGCAATTCAGAAAGACGGGACATACTCATGGACAAGTT CCAGGCAATTCAGAAAGACTGGACATACTCATGGACAAGTT < 41bp 0.633947567631728 0.875529385972582 NA NA prediction 0.483163636681707 Functional Gain - ZSCAN16 ENSG00000196812 CDS Human protein_coding chr6:28094584 chr6:28094583 nonsynonymous SNV 0.932 0 20 hm7G_associated_SNPs_22282 0 0 1 0 1 ZSCAN16 chr6:28094561 3'AG 28094561 Downstream 23bp 20633 chr6 35260719 35260719 1 + G T UCEC 35260720 + 35260700 35260740 41 GGATAGCTTACCTTTCGGAGGTGAAGGAAGAGAGAGATGAC GGATAGCTTACCTTTCGGATGTGAAGGAAGAGAGAGATGAC < 41bp 0.636395202750262 0.877967164930734 NA NA prediction 0.483143924360945 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35260720 chr6:35260719 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_22283 0 0 1 0 1 ZNF76 chr6:35260658 3'AG 35260658 Downstream 62bp 20634 chr16 88779765 88779765 1 + G T LGG 88779766 + 88779746 88779786 41 GAGCCCACGGCTACTCCAAGGTCATGACTGGGGACAGCTGC GAGCCCACGGCTACTCCAATGTCATGACTGGGGACAGCTGC < 41bp 0.393082123328962 0.741570332654208 NA NA prediction 0.483140665308417 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779766 chr16:88779765 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22284 0 0 0 0 2 CTU2 chr16:88779720 3'AG 88779720 Downstream 46bp 20635 chr16 88779765 88779765 1 + G T LGG 88779766 + 88779746 88779786 41 GAGCCCACGGCTACTCCAAGGTCATGACTGGGGACAGCTGC GAGCCCACGGCTACTCCAATGTCATGACTGGGGACAGCTGC < 41bp 0.393082123328962 0.741570332654208 NA NA prediction 0.483140665308417 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88779766 chr16:88779765 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22284 0 0 0 0 2 CTU2 chr16:88779855 5'GT 88779855 Upstream 91bp 20636 chr5 178503532 178503532 1 + G T HNSC 178503533 + 178503513 178503553 41 CCCAGAGGGCCTTGTACCGGGAGGTGATGCTGGAGAACTAC CCCAGAGGGCCTTGTACCGTGAGGTGATGCTGGAGAACTAC < 41bp 0.643979839825496 0.885545862671188 NA NA prediction 0.483132045691384 Functional Gain - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178503533 chr5:178503532 synonymous SNV . 0 20 hm7G_associated_SNPs_22285 0 0 0 0 2 ZNF354C chr5:178503446 3'AG 178503446 Downstream 87bp 20637 chr5 178503532 178503532 1 + G T HNSC 178503533 + 178503513 178503553 41 CCCAGAGGGCCTTGTACCGGGAGGTGATGCTGGAGAACTAC CCCAGAGGGCCTTGTACCGTGAGGTGATGCTGGAGAACTAC < 41bp 0.643979839825496 0.885545862671188 NA NA prediction 0.483132045691384 Functional Gain - ZNF354C ENSG00000177932 CDS Human protein_coding chr5:178503533 chr5:178503532 synonymous SNV . 0 20 hm7G_associated_SNPs_22285 0 0 0 0 2 ZNF354C chr5:178503572 5'GT 178503572 Upstream 41bp 20638 chr17 7317997 7317997 1 + G T LUAD 7317998 + 7317978 7318018 41 CCAGGTTTTCTCAGCACCGGGGACCAGGCTGCAAAAGGCAA CCAGGTTTTCTCAGCACCGTGGACCAGGCTGCAAAAGGCAA < 41bp 0.652731070133155 0.894271069188275 NA NA prediction 0.483079998110241 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7317998 chr17:7317997 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_22286 0 0 1 0 1 NLGN2 chr17:7317982 3'AG 7317982 Downstream 16bp 20639 chr2 191550284 191550284 1 + G T COAD 191550285 + 191550265 191550305 41 CTGCAGCATGCCGAGAGGAGGTTGTCTGCAGGGCTTTACAG CTGCAGCATGCCGAGAGGATGTTGTCTGCAGGGCTTTACAG < 41bp 0.414703861527821 0.74148698049948 NA NA prediction 0.482973960998959 Functional Gain - NAB1 ENSG00000138386 CDS Human protein_coding chr2:191550285 chr2:191550284 nonsynonymous SNV 0.026 3 20 hm7G_associated_SNPs_22290 0 0 1 0 3 NAB1 chr2:191550202 3'AG 191550202 Downstream 83bp 20640 chr2 191550284 191550284 1 + G T COAD 191550285 + 191550265 191550305 41 CTGCAGCATGCCGAGAGGAGGTTGTCTGCAGGGCTTTACAG CTGCAGCATGCCGAGAGGATGTTGTCTGCAGGGCTTTACAG < 41bp 0.414703861527821 0.74148698049948 NA NA prediction 0.482973960998959 Functional Gain - NAB1 ENSG00000138386 CDS Human protein_coding chr2:191550285 chr2:191550284 nonsynonymous SNV 0.026 3 20 hm7G_associated_SNPs_22290 0 0 1 0 3 NAB1 chr2:191550205 3'AG 191550205 Downstream 80bp 20641 chr2 191550284 191550284 1 + G T COAD 191550285 + 191550265 191550305 41 CTGCAGCATGCCGAGAGGAGGTTGTCTGCAGGGCTTTACAG CTGCAGCATGCCGAGAGGATGTTGTCTGCAGGGCTTTACAG < 41bp 0.414703861527821 0.74148698049948 NA NA prediction 0.482973960998959 Functional Gain - NAB1 ENSG00000138386 CDS Human protein_coding chr2:191550285 chr2:191550284 nonsynonymous SNV 0.026 3 20 hm7G_associated_SNPs_22290 0 0 1 0 3 NAB1 chr2:191550364 5'GT 191550364 Upstream 81bp 20642 chr1 165876981 165876981 1 + G T LUAD 165876982 + 165876962 165877002 41 AATGGAGGGCCCTCCAAACGGCAGACCAATGGCTGTCTCAA AATGGAGGGCCCTCCAAACTGCAGACCAATGGCTGTCTCAA < 41bp 0.63114859022623 0.872612952067099 NA NA prediction 0.482928723681739 Functional Gain - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165876982 chr1:165876981 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_22295 0 0 1 0 1 UCK2 chr1:165876921 3'AG 165876921 Downstream 61bp 20643 chr6 42851305 42851305 1 + G T LUAD 42851306 + 42851286 42851326 41 AAGTGAAACCTCATGCCTTGGAATTGCCAGATAAACATTCC AAGTGAAACCTCATGCCTTTGAATTGCCAGATAAACATTCC < 41bp 0.399857889808361 0.741448930999617 NA NA prediction 0.482897861999235 Functional Gain - RPL7L1 ENSG00000146223 CDS Human protein_coding chr6:42851306 chr6:42851305 nonsynonymous SNV 0.862 2 20 hm7G_associated_SNPs_22297 0 0 0 0 1 RPL7L1 chr6:42851352 5'GT 42851352 Upstream 48bp 20644 chr12 53449431 53449431 1 + G T COAD 53449432 + 53449412 53449452 41 TGCAAAGCCATGGAGACATGGCTCAGTGCTGACCCACAGCA TGCAAAGCCATGGAGACATTGCTCAGTGCTGACCCACAGCA < 41bp 0.387145306959606 0.741441704022684 NA NA prediction 0.482883408045368 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53449432 chr12:53449431 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_22299 0 0 1 0 2 TNS2 chr12:53449352 3'AG 53449352 Downstream 80bp 20645 chr12 53449431 53449431 1 + G T COAD 53449432 + 53449412 53449452 41 TGCAAAGCCATGGAGACATGGCTCAGTGCTGACCCACAGCA TGCAAAGCCATGGAGACATTGCTCAGTGCTGACCCACAGCA < 41bp 0.387145306959606 0.741441704022684 NA NA prediction 0.482883408045368 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53449432 chr12:53449431 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_22299 0 0 1 0 2 TNS2 chr12:53449474 5'GT 53449474 Upstream 44bp 20646 chr3 184105719 184105719 1 + G T ACC 184105720 + 184105700 184105740 41 GCTCAATGGATCCCTACAGGGGGGCACTGGAGAGGTGCACT GCTCAATGGATCCCTACAGTGGGGCACTGGAGAGGTGCACT < 41bp 0.643301266820263 0.884704915547382 NA NA prediction 0.482807297454237 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184105720 chr3:184105719 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_22300 0 0 1 0 1 CHRD chr3:184105719 3'AG 184105719 Downstream 1bp 20647 chr17 72773472 72773472 1 + G T OV 72773473 + 72773453 72773493 41 CTTCCTCACTTTTGGAAATGGCGGGTGAAATTACAGAGACC CTTCCTCACTTTTGGAAATTGCGGGTGAAATTACAGAGACC < 41bp 0.400253204722572 0.74136128718449 NA NA prediction 0.482722574368981 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72773473 chr17:72773472 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_22302 0 0 0 0 3 TMEM104 chr17:72773403 3'AG 72773403 Downstream 70bp 20648 chr17 72773472 72773472 1 + G T OV 72773473 + 72773453 72773493 41 CTTCCTCACTTTTGGAAATGGCGGGTGAAATTACAGAGACC CTTCCTCACTTTTGGAAATTGCGGGTGAAATTACAGAGACC < 41bp 0.400253204722572 0.74136128718449 NA NA prediction 0.482722574368981 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72773473 chr17:72773472 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_22302 0 0 0 0 3 TMEM104 chr17:72773406 3'AG 72773406 Downstream 67bp 20649 chr17 72773472 72773472 1 + G T OV 72773473 + 72773453 72773493 41 CTTCCTCACTTTTGGAAATGGCGGGTGAAATTACAGAGACC CTTCCTCACTTTTGGAAATTGCGGGTGAAATTACAGAGACC < 41bp 0.400253204722572 0.74136128718449 NA NA prediction 0.482722574368981 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72773473 chr17:72773472 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_22302 0 0 0 0 3 TMEM104 chr17:72773514 5'GT 72773514 Upstream 43bp 20650 chr9 103338820 103338820 1 + G T LUAD 103338821 + 103338801 103338841 41 ATGCCCCAAAAACAATAGAGGACGTCGACAGAAGCAAAACC ATGCCCCAAAAACAATAGATGACGTCGACAGAAGCAAAACC < 41bp 0.59856957093035 0.839920253419073 NA NA prediction 0.482701364977445 Functional Gain - MSANTD3-TMEFF1;TMEFF1 ENSG00000241697;ENSG00000251349 CDS Human other chr9:103338821 chr9:103338820 stopgain 1.000 1 20 hm7G_associated_SNPs_22303 0 0 0 0 1 MSANTD3-TMEFF1;TMEFF1 chr9:103338798 3'AG 103338798 Downstream 23bp 20651 chr9 131762068 131762068 1 + G T UCEC 131762069 + 131762049 131762089 41 TGTTCTCGGTCCCGGCACAGGGACCAGCGTGATGGGGTGAG TGTTCTCGGTCCCGGCACATGGACCAGCGTGATGGGGTGAG < 41bp 0.640359821297941 0.88170595463191 NA NA prediction 0.482692266667938 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131762069 chr9:131762068 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22304 0 0 1 0 1 NUP188 chr9:131762084 5'GT 131762084 Upstream 17bp 20652 chr9 123898152 123898152 1 + G T LUAD 123898153 + 123898133 123898173 41 CATCTTTGCAGCAGACCCAGGGAGATCTCAGTGCCTATGAA CATCTTTGCAGCAGACCCATGGAGATCTCAGTGCCTATGAA < 41bp 0.401854143921595 0.741334746936564 NA NA prediction 0.482669493873128 Functional Gain - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123898153 chr9:123898152 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_22305 0 0 1 0 1 CNTRL chr9:123898084 3'AG 123898084 Downstream 69bp 20653 chr17 7696336 7696336 1 + G T LGG 7696337 + 7696317 7696357 41 CAGAGCATCATTGAGAGCAGGGTTGAGAAGCGAACCAAGGG CAGAGCATCATTGAGAGCATGGTTGAGAAGCGAACCAAGGG < 41bp 0.441287562395103 0.741318004164562 NA NA prediction 0.482636008329125 Functional Gain - DNAH2 ENSG00000183914 CDS Human protein_coding chr17:7696337 chr17:7696336 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_22306 0 0 0 0 1 DNAH2 chr17:7696299 3'AG 7696299 Downstream 38bp 20654 chr17 79430702 79430702 1 + G T OV 79430703 + 79430683 79430723 41 CCATCTCCCACAAGTGCCAGGTCGTGGCGCGCGAGCAGTAT CCATCTCCCACAAGTGCCATGTCGTGGCGCGCGAGCAGTAT < 41bp 0.416355545884013 0.741299669491987 NA NA prediction 0.482599338983974 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79430703 chr17:79430702 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_22309 0 0 0 0 1 BAHCC1 chr17:79430637 3'AG 79430637 Downstream 66bp 20655 chr6 71562272 71562272 1 + G T THCA 71562273 + 71562253 71562293 41 TGTGGCACCAGTGACCAACGGGAACACAACGGTGCCACCCC TGTGGCACCAGTGACCAACTGGAACACAACGGTGCCACCCC < 41bp 0.643213137757282 0.884510087508897 NA NA prediction 0.482593899503229 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71562273 chr6:71562272 nonsynonymous SNV 0.608 3 20 hm7G_associated_SNPs_22310 0 0 0 0 2 SMAP1 chr6:71562243 3'AG 71562243 Downstream 30bp 20656 chr6 71562272 71562272 1 + G T THCA 71562273 + 71562253 71562293 41 TGTGGCACCAGTGACCAACGGGAACACAACGGTGCCACCCC TGTGGCACCAGTGACCAACTGGAACACAACGGTGCCACCCC < 41bp 0.643213137757282 0.884510087508897 NA NA prediction 0.482593899503229 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71562273 chr6:71562272 nonsynonymous SNV 0.608 3 20 hm7G_associated_SNPs_22310 0 0 0 0 2 SMAP1 chr6:71562367 5'GT 71562367 Upstream 96bp 20657 chr6 97052739 97052739 1 + G T LUSC 97052740 + 97052720 97052760 41 ATGAGCGCCTGCTGTGCACGGAGTGCTATTCTAACGAGTGC ATGAGCGCCTGCTGTGCACTGAGTGCTATTCTAACGAGTGC < 41bp 0.40708338661238 0.741288840533362 NA NA prediction 0.482577681066723 Functional Gain - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97052740 chr6:97052739 synonymous SNV . 0 20 hm7G_associated_SNPs_22311 0 0 0 0 1 FHL5 chr6:97052800 5'GT 97052800 Upstream 62bp 20658 chr2 202342852 202342852 1 + G T LUSC 202342853 + 202342833 202342873 41 GTCAGATATTTACAGTGTTGGGATTACAGCATGTGAATTAG GTCAGATATTTACAGTGTTTGGATTACAGCATGTGAATTAG < 41bp 0.636789071121807 0.878073376108323 NA NA prediction 0.482568609973031 Functional Gain - STRADB ENSG00000082146 CDS Human protein_coding chr2:202342853 chr2:202342852 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22312 0 0 0 0 2 STRADB chr2:202342810 3'AG 202342810 Downstream 43bp 20659 chr2 202342852 202342852 1 + G T LUSC 202342853 + 202342833 202342873 41 GTCAGATATTTACAGTGTTGGGATTACAGCATGTGAATTAG GTCAGATATTTACAGTGTTTGGATTACAGCATGTGAATTAG < 41bp 0.636789071121807 0.878073376108323 NA NA prediction 0.482568609973031 Functional Gain - STRADB ENSG00000082146 CDS Human protein_coding chr2:202342853 chr2:202342852 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22312 0 0 0 0 2 STRADB chr2:202342914 5'GT 202342914 Upstream 63bp 20660 chr19 41622461 41622461 1 + G T SKCM 41622462 + 41622442 41622482 41 AGGAGGCCCTGGTGGACCAGGGAGAGGAGTTTAGTGGCCGC AGGAGGCCCTGGTGGACCATGGAGAGGAGTTTAGTGGCCGC < 41bp 0.653588179802797 0.894868944756731 NA NA prediction 0.482561529907869 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622462 chr19:41622461 nonsynonymous SNV 0.063 2 20 hm7G_associated_SNPs_22313 0 0 0 0 1 CYP2F1 chr19:41622522 5'GT 41622522 Upstream 62bp 20661 chr10 134012399 134012399 1 + G T LUSC 134012400 + 134012380 134012420 41 CTGTCACCATCGCCAAGCAGGCAAACTGCCCGCTGTACGTC CTGTCACCATCGCCAAGCATGCAAACTGCCCGCTGTACGTC < 41bp 0.654534684094756 0.895813509098891 NA NA prediction 0.48255765000827 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134012400 chr10:134012399 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22314 0 0 0 0 2 DPYSL4 chr10:134012355 3'AG 134012355 Downstream 45bp 20662 chr10 134012399 134012399 1 + G T LUSC 134012400 + 134012380 134012420 41 CTGTCACCATCGCCAAGCAGGCAAACTGCCCGCTGTACGTC CTGTCACCATCGCCAAGCATGCAAACTGCCCGCTGTACGTC < 41bp 0.654534684094756 0.895813509098891 NA NA prediction 0.48255765000827 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134012400 chr10:134012399 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22314 0 0 0 0 2 DPYSL4 chr10:134012475 5'GT 134012475 Upstream 77bp 20663 chr4 38907442 38907442 1 + G T LUSC 38907443 + 38907423 38907463 41 TCCCCTTCATCAGCCTCTCGGGGTATGCTGTCTGCCATCAC TCCCCTTCATCAGCCTCTCTGGGTATGCTGTCTGCCATCAC < 41bp 0.394512870224137 0.741267343141124 NA NA prediction 0.482534686282248 Functional Gain - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907443 chr4:38907442 nonsynonymous SNV 0.058 3 20 hm7G_associated_SNPs_22317 0 0 1 0 2 FAM114A1 chr4:38907376 3'AG 38907376 Downstream 67bp 20664 chr4 38907442 38907442 1 + G T LUSC 38907443 + 38907423 38907463 41 TCCCCTTCATCAGCCTCTCGGGGTATGCTGTCTGCCATCAC TCCCCTTCATCAGCCTCTCTGGGTATGCTGTCTGCCATCAC < 41bp 0.394512870224137 0.741267343141124 NA NA prediction 0.482534686282248 Functional Gain - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907443 chr4:38907442 nonsynonymous SNV 0.058 3 20 hm7G_associated_SNPs_22317 0 0 1 0 2 FAM114A1 chr4:38907482 5'GT 38907482 Upstream 41bp 20665 chr10 99344623 99344623 1 + G T BLCA 99344624 + 99344604 99344644 41 CACTGCAGAGGTGGACTATGGGAAACTGGAGGAGAATCTGC CACTGCAGAGGTGGACTATTGGAAACTGGAGGAGAATCTGC < 41bp 0.646609914581505 0.887869354931285 NA NA prediction 0.482518880699559 Functional Gain - HOGA1 ENSG00000155252;ENSG00000241935;ENSG00000249967 CDS Human other chr10:99344624 chr10:99344623 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22319 0 0 0 0 1 HOGA1 chr10:99344671 5'GT 99344671 Upstream 49bp 20666 chr3 178942523 178942523 1 + G T COAD 178942524 + 178942504 178942544 41 ATTATGTCCTCTGCAAAAAGGCCACTGTGGTTGAATTGGGA ATTATGTCCTCTGCAAAAATGCCACTGTGGTTGAATTGGGA < 41bp 0.634350423996544 0.875604929329895 NA NA prediction 0.482509010666702 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178942524 chr3:178942523 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22321 0 0 0 0 2 PIK3CA chr3:178942488 3'AG 178942488 Downstream 36bp 20667 chr3 178942523 178942523 1 + G T COAD 178942524 + 178942504 178942544 41 ATTATGTCCTCTGCAAAAAGGCCACTGTGGTTGAATTGGGA ATTATGTCCTCTGCAAAAATGCCACTGTGGTTGAATTGGGA < 41bp 0.634350423996544 0.875604929329895 NA NA prediction 0.482509010666702 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178942524 chr3:178942523 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22321 0 0 0 0 2 PIK3CA chr3:178942609 5'GT 178942609 Upstream 87bp 20668 chr15 85478733 85478733 1 + G T KICH 85478734 + 85478714 85478754 41 GAGGAGTGGGTCGGCGACAGGAAGCAGTGGATCTCCGTGAG GAGGAGTGGGTCGGCGACATGAAGCAGTGGATCTCCGTGAG < 41bp 0.637989196321409 0.87923806128141 NA NA prediction 0.482497729920001 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85478734 chr15:85478733 nonsynonymous SNV 0.422 0 20 hm7G_associated_SNPs_22323 0 0 0 0 1 SLC28A1 chr15:85478749 5'GT 85478749 Upstream 17bp 20669 chr1 175105030 175105030 1 + G T LUSC 175105031 + 175105011 175105051 41 GATTTCTTCAAGCGATGGAGGAGCTATGTGGAAGGCTTTGG GATTTCTTCAAGCGATGGATGAGCTATGTGGAAGGCTTTGG < 41bp 0.643743743780991 0.884984716431606 NA NA prediction 0.48248194530123 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175105031 chr1:175105030 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_22325 0 0 0 0 2 TNN chr1:175104981 3'AG 175104981 Downstream 50bp 20670 chr1 175105030 175105030 1 + G T LUSC 175105031 + 175105011 175105051 41 GATTTCTTCAAGCGATGGAGGAGCTATGTGGAAGGCTTTGG GATTTCTTCAAGCGATGGATGAGCTATGTGGAAGGCTTTGG < 41bp 0.643743743780991 0.884984716431606 NA NA prediction 0.48248194530123 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175105031 chr1:175105030 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_22325 0 0 0 0 2 TNN chr1:175105077 5'GT 175105077 Upstream 48bp 20671 chr9 128722978 128722978 1 + G T LUSC 128722979 + 128722959 128722999 41 GTAGGTATCCAATTGGTTTGGCAACAAACGAATCAGGTACA GTAGGTATCCAATTGGTTTTGCAACAAACGAATCAGGTACA < 41bp 0.636864364080694 0.87809766186434 NA NA prediction 0.482466595567292 Functional Gain - PBX3 ENSG00000167081 CDS Human protein_coding chr9:128722979 chr9:128722978 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22326 0 0 0 0 1 PBX3 chr9:128722963 3'AG 128722963 Downstream 16bp 20672 chrX 77254170 77254170 1 + G T LUSC 77254171 + 77254151 77254191 41 AACATTGAACGGAATTTAAGGCGGGAAGAAGGTGAGACACT AACATTGAACGGAATTTAATGCGGGAAGAAGGTGAGACACT < 41bp 0.421728985964454 0.741226710304336 NA NA prediction 0.482453420608671 Functional Gain - ATP7A ENSG00000165240 CDS Human protein_coding chrX:77254171 chrX:77254170 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22327 0 0 0 0 1 ATP7A chrX:77254181 5'GT 77254181 Upstream 12bp 20673 chrX 14550453 14550453 1 + G T LUAD 14550454 + 14550434 14550474 41 TTGGACAAGTTAATGGGAAGGACATCAGGATATGATGCAAG TTGGACAAGTTAATGGGAATGACATCAGGATATGATGCAAG < 41bp 0.426112122194315 0.74122288154968 NA NA prediction 0.482445763099361 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550454 chrX:14550453 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22328 0 0 0 0 2 GLRA2 chrX:14550361 3'AG 14550361 Downstream 93bp 20674 chrX 14550453 14550453 1 + G T LUAD 14550454 + 14550434 14550474 41 TTGGACAAGTTAATGGGAAGGACATCAGGATATGATGCAAG TTGGACAAGTTAATGGGAATGACATCAGGATATGATGCAAG < 41bp 0.426112122194315 0.74122288154968 NA NA prediction 0.482445763099361 Functional Gain - GLRA2 ENSG00000101958 CDS Human protein_coding chrX:14550454 chrX:14550453 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22328 0 0 0 0 2 GLRA2 chrX:14550494 5'GT 14550494 Upstream 42bp 20675 chr7 141341194 141341194 1 + G T UCEC 141341195 + 141341175 141341215 41 CCTACTGGGCACAACCACAGGATGGTGAGCAATGTGGCGAC CCTACTGGGCACAACCACATGATGGTGAGCAATGTGGCGAC < 41bp 0.633589217274889 0.874809517877967 NA NA prediction 0.482440601206156 Functional Gain - AGK ENSG00000006530 CDS Human protein_coding chr7:141341195 chr7:141341194 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22329 0 0 0 0 1 AGK chr7:141341198 5'GT 141341198 Upstream 5bp 20676 chr9 33797845 33797845 1 + G T LIHC 33797846 + 33797826 33797866 41 GCCGCATCCAGGTGAGACTGGGAGAGCACAACATCAAAGTC GCCGCATCCAGGTGAGACTTGGAGAGCACAACATCAAAGTC < 41bp 0.649269058692187 0.890489235007722 NA NA prediction 0.482440352631069 Functional Gain - PRSS3 ENSG00000010438 CDS Human protein_coding chr9:33797846 chr9:33797845 synonymous SNV . 0 20 hm7G_associated_SNPs_22330 0 0 0 0 1 PRSS3 chr9:33797827 3'AG 33797827 Downstream 19bp 20677 chr18 52544943 52544943 1 + G T UCEC 52544944 + 52544924 52544964 41 CAAATTCATCACTACAGTAGGAATAGACTTTCGGGAAAAAC CAAATTCATCACTACAGTATGAATAGACTTTCGGGAAAAAC < 41bp 0.611230406371484 0.852439789616225 NA NA prediction 0.482418766489481 Functional Gain - RAB27B ENSG00000041353 CDS Human protein_coding chr18:52544944 chr18:52544943 stopgain 1.000 1 20 hm7G_associated_SNPs_22331 0 0 0 0 1 RAB27B chr18:52544969 5'GT 52544969 Upstream 27bp 20678 chr15 37001446 37001446 1 + G T SKCM 37001447 + 37001427 37001467 41 AAGATCAGCTTCGTGCAAAGGGTTATGACAAAACACCAGAC AAGATCAGCTTCGTGCAAATGGTTATGACAAAACACCAGAC < 41bp 0.630599119647313 0.871789976621881 NA NA prediction 0.482381713949135 Functional Gain - C15orf41 ENSG00000186073 CDS Human protein_coding chr15:37001447 chr15:37001446 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22334 0 0 1 0 2 C15orf41 chr15:37001424 3'AG 37001424 Downstream 23bp 20679 chr15 37001446 37001446 1 + G T SKCM 37001447 + 37001427 37001467 41 AAGATCAGCTTCGTGCAAAGGGTTATGACAAAACACCAGAC AAGATCAGCTTCGTGCAAATGGTTATGACAAAACACCAGAC < 41bp 0.630599119647313 0.871789976621881 NA NA prediction 0.482381713949135 Functional Gain - C15orf41 ENSG00000186073 CDS Human protein_coding chr15:37001447 chr15:37001446 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22334 0 0 1 0 2 C15orf41 chr15:37001489 5'GT 37001489 Upstream 44bp 20680 chr17 7317803 7317803 1 + G T UCEC 7317804 + 7317784 7317824 41 CACGCTCAACTACCGTCTTGGGGTGCTCGGTGAGGGTGGGC CACGCTCAACTACCGTCTTTGGGTGCTCGGTGAGGGTGGGC < 41bp 0.390080586528128 0.741183390538367 NA NA prediction 0.482366781076733 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7317804 chr17:7317803 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22337 0 0 1 0 1 NLGN2 chr17:7317812 5'GT 7317812 Upstream 10bp 20681 chr20 61588799 61588799 1 + G T ESCA 61588800 + 61588780 61588820 41 GTCTTCCCTCCAGGATTGGGGGTGAGAAGGTCATCCTGCTG GTCTTCCCTCCAGGATTGGTGGTGAGAAGGTCATCCTGCTG < 41bp 0.647298818991863 0.888467014388258 NA NA prediction 0.48233639079279 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61588800 chr20:61588799 synonymous SNV . 0 20 hm7G_associated_SNPs_22340 0 0 1 0 1 SLC17A9 chr20:61588793 3'AG 61588793 Downstream 7bp 20682 chr16 54965312 54965312 1 + G T LUSC 54965313 + 54965293 54965333 41 CAACTCGCACCTCCAGTACGGCGCCGACCCCGCGGCCGCCG CAACTCGCACCTCCAGTACTGCGCCGACCCCGCGGCCGCCG < 41bp 0.630764922119071 0.871921545709443 NA NA prediction 0.482313247180744 Functional Gain - IRX5 ENSG00000176842 CDS Human protein_coding chr16:54965313 chr16:54965312 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22341 0 0 0 0 1 IRX5 chr16:54965359 5'GT 54965359 Upstream 48bp 20683 chr15 50475083 50475083 1 + G T UCEC 50475084 + 50475064 50475104 41 TCCAGTGCTGCGGGGCGAAGGTGCTGCTGGTGTCGCCAGGT TCCAGTGCTGCGGGGCGAATGTGCTGCTGGTGTCGCCAGGT < 41bp 0.412937951709409 0.741150972753286 NA NA prediction 0.482301945506573 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50475084 chr15:50475083 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22342 0 0 1 0 1 SLC27A2 chr15:50475102 5'GT 50475102 Upstream 20bp 20684 chrX 107935982 107935982 1 + G T LUSC 107935983 + 107935963 107936003 41 TCCAAATCTTTCTAGGGACGGCTGGCAGCTGCCTTCGTCGC TCCAAATCTTTCTAGGGACTGCTGGCAGCTGCCTTCGTCGC < 41bp 0.422197138783227 0.741139385969367 NA NA prediction 0.482278771938733 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107935983 chrX:107935982 synonymous SNV . 0 20 hm7G_associated_SNPs_22343 0 0 0 0 1 COL4A5 chrX:107935978 3'AG 107935978 Downstream 5bp 20685 chr19 52877654 52877654 1 + G T LUSC 52877655 + 52877635 52877675 41 GCAAACAATCCAGGTGGCAGGGAGTGCATCAAAGGTGTGAA GCAAACAATCCAGGTGGCATGGAGTGCATCAAAGGTGTGAA < 41bp 0.634443828936266 0.875583205333236 NA NA prediction 0.482278752793939 Functional Gain - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877655 chr19:52877654 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_22344 0 0 1 0 2 ZNF880 chr19:52877680 5'GT 52877680 Upstream 27bp 20686 chr19 52877654 52877654 1 + G T LUSC 52877655 + 52877635 52877675 41 GCAAACAATCCAGGTGGCAGGGAGTGCATCAAAGGTGTGAA GCAAACAATCCAGGTGGCATGGAGTGCATCAAAGGTGTGAA < 41bp 0.634443828936266 0.875583205333236 NA NA prediction 0.482278752793939 Functional Gain - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877655 chr19:52877654 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_22344 0 0 1 0 2 ZNF880 chr19:52877737 5'GT 52877737 Upstream 84bp 20687 chr11 60890399 60890399 1 + G T UCEC 60890400 + 60890380 60890420 41 CCAGGATCCAAACCCCGCAGGCCTGGCCGCAGGCACGGTGG CCAGGATCCAAACCCCGCATGCCTGGCCGCAGGCACGGTGG < 41bp 0.650859846876821 0.891998974676237 NA NA prediction 0.482278255598832 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60890400 chr11:60890399 nonsynonymous SNV 0.030 3 20 hm7G_associated_SNPs_22345 0 0 0 0 1 CD5 chr11:60890379 3'AG 60890379 Downstream 21bp 20688 chr12 56625260 56625260 1 + G T STAD 56625261 + 56625241 56625281 41 TCTCCACAGCCTGGGGCTAGGCCGAGTTCAGGGGCTTCGCC TCTCCACAGCCTGGGGCTATGCCGAGTTCAGGGGCTTCGCC < 41bp 0.646890651846929 0.888011202427434 NA NA prediction 0.48224110116101 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625261 chr12:56625260 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22346 0 0 0 0 2 SLC39A5 chr12:56625250 3'AG 56625250 Downstream 11bp 20689 chr12 56625260 56625260 1 + G T STAD 56625261 + 56625241 56625281 41 TCTCCACAGCCTGGGGCTAGGCCGAGTTCAGGGGCTTCGCC TCTCCACAGCCTGGGGCTATGCCGAGTTCAGGGGCTTCGCC < 41bp 0.646890651846929 0.888011202427434 NA NA prediction 0.48224110116101 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56625261 chr12:56625260 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22346 0 0 0 0 2 SLC39A5 chr12:56625345 5'GT 56625345 Upstream 86bp 20690 chr22 37699442 37699442 1 + G T LUAD 37699443 + 37699423 37699463 41 CTGCCCGAGGACCAGCTGCGGGTGAGAGAGGCGCAGCCCAC CTGCCCGAGGACCAGCTGCTGGTGAGAGAGGCGCAGCCCAC < 41bp 0.643296180029686 0.884413600403202 NA NA prediction 0.482234840747032 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37699443 chr22:37699442 nonsynonymous SNV 0.509 0 20 hm7G_associated_SNPs_22347 0 0 0 0 1 CYTH4 chr22:37699443 5'GT 37699443 Upstream 2bp 20691 chr9 126783560 126783560 1 + G T KIRC 126783561 + 126783541 126783581 41 GCAGCTCGCGCAAAAGACGGGCCTCACCAAGCGGGTCCTCC GCAGCTCGCGCAAAAGACGTGCCTCACCAAGCGGGTCCTCC < 41bp 0.648150790688016 0.889233658828674 NA NA prediction 0.482165736281316 Functional Gain - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126783561 chr9:126783560 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_22349 0 0 0 0 1 LHX2 chr9:126783583 5'GT 126783583 Upstream 24bp 20692 chrX 135112295 135112295 1 + G T LUAD 135112296 + 135112276 135112316 41 GTCTTTCTCCTTTAGGGTTGGTGTTGATTCAGACCAAGAAC GTCTTTCTCCTTTAGGGTTTGTGTTGATTCAGACCAAGAAC < 41bp 0.430194387556718 0.741081487440133 NA NA prediction 0.482162974880267 Functional Gain - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135112296 chrX:135112295 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22350 0 0 0 0 1 SLC9A6 chrX:135112321 5'GT 135112321 Upstream 27bp 20693 chr19 58189305 58189305 1 + G T UCEC 58189306 + 58189286 58189326 41 ACGTCCACATGCAGGGACAGGAAGCTCTCTTTTCTGAGGAT ACGTCCACATGCAGGGACATGAAGCTCTCTTTTCTGAGGAT < 41bp 0.417027563498337 0.74106793775756 NA NA prediction 0.482135875515121 Functional Gain - ZSCAN4 ENSG00000180532 CDS Human protein_coding chr19:58189306 chr19:58189305 nonsynonymous SNV 0.910 1 20 hm7G_associated_SNPs_22351 0 0 0 0 1 ZSCAN4 chr19:58189282 3'AG 58189282 Downstream 24bp 20694 chr1 1386072 1386072 1 + G T UCEC 1386073 + 1386053 1386093 41 ATCTGCAGGCCATGTCAAAGGACGCCCTGAATCTGGCGCAG ATCTGCAGGCCATGTCAAATGACGCCCTGAATCTGGCGCAG < 41bp 0.409263985188367 0.741066788971515 NA NA prediction 0.482133577943031 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1386073 chr1:1386072 nonsynonymous SNV 0.025 4 20 hm7G_associated_SNPs_22352 0 0 0 0 1 ATAD3C chr1:1386138 5'GT 1386138 Upstream 67bp 20695 chr1 215408173 215408173 1 + G T LUSC 215408174 + 215408154 215408194 41 CTGCTTGTATGTTCCAGGTGGGAGAGTTCAGAGCACACGCT CTGCTTGTATGTTCCAGGTTGGAGAGTTCAGAGCACACGCT < 41bp 0.613716530667429 0.854782055201038 NA NA prediction 0.482131049067219 Functional Gain - KCNK2 ENSG00000082482 CDS Human protein_coding chr1:215408174 chr1:215408173 synonymous SNV . 0 20 hm7G_associated_SNPs_22353 0 0 0 0 1 KCNK2 chr1:215408171 3'AG 215408171 Downstream 3bp 20696 chr14 76643024 76643024 1 + G T LUAD 76643025 + 76643005 76643045 41 CATATCATTAGTGACCCTCGGCAGAAAGAGTAAGTGCTTAT CATATCATTAGTGACCCTCTGCAGAAAGAGTAAGTGCTTAT < 41bp 0.518721340308292 0.75976736946298 NA NA prediction 0.482092058309377 Functional Gain - GPATCH2L ENSG00000089916 CDS Human protein_coding chr14:76643025 chr14:76643024 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_22354 0 0 1 0 1 GPATCH2L chr14:76642966 3'AG 76642966 Downstream 59bp 20697 chr17 18387216 18387216 1 + G T LUAD 18387217 + 18387197 18387237 41 CTTTTCTGGGACTATCCAAGGGGGTCTCCAGGACGGATTTC CTTTTCTGGGACTATCCAATGGGGTCTCCAGGACGGATTTC < 41bp 0.396866860218387 0.741041934114483 NA NA prediction 0.482083868228967 Functional Gain - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18387217 chr17:18387216 nonsynonymous SNV 0.023 4 20 hm7G_associated_SNPs_22355 0 0 0 0 2 LGALS9C chr17:18387189 3'AG 18387189 Downstream 28bp 20698 chr17 18387216 18387216 1 + G T LUAD 18387217 + 18387197 18387237 41 CTTTTCTGGGACTATCCAAGGGGGTCTCCAGGACGGATTTC CTTTTCTGGGACTATCCAATGGGGTCTCCAGGACGGATTTC < 41bp 0.396866860218387 0.741041934114483 NA NA prediction 0.482083868228967 Functional Gain - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18387217 chr17:18387216 nonsynonymous SNV 0.023 4 20 hm7G_associated_SNPs_22355 0 0 0 0 2 LGALS9C chr17:18387280 5'GT 18387280 Upstream 65bp 20699 chr20 30672333 30672333 1 + G T LUAD 30672334 + 30672314 30672354 41 TTGGAGCTGGGCAGTTTGGGGAAGTCTGGATGGGTAAGGAC TTGGAGCTGGGCAGTTTGGTGAAGTCTGGATGGGTAAGGAC < 41bp 0.650272125108368 0.891311545008546 NA NA prediction 0.482078839800358 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30672334 chr20:30672333 synonymous SNV . 0 20 hm7G_associated_SNPs_22356 0 0 0 0 1 HCK chr20:30672346 5'GT 30672346 Upstream 14bp 20700 chr3 119101987 119101987 1 + G T LUSC 119101988 + 119101968 119102008 41 GCAGCCTTCCTTGCAGTCCGGGTCCAGCAGGTGGTGATTGA GCAGCCTTCCTTGCAGTCCTGGTCCAGCAGGTGGTGATTGA < 41bp 0.644174747546617 0.885199484612957 NA NA prediction 0.48204947413268 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119101988 chr3:119101987 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_22357 0 0 0 0 2 ARHGAP31 chr3:119101931 3'AG 119101931 Downstream 57bp 20701 chr3 119101987 119101987 1 + G T LUSC 119101988 + 119101968 119102008 41 GCAGCCTTCCTTGCAGTCCGGGTCCAGCAGGTGGTGATTGA GCAGCCTTCCTTGCAGTCCTGGTCCAGCAGGTGGTGATTGA < 41bp 0.644174747546617 0.885199484612957 NA NA prediction 0.48204947413268 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119101988 chr3:119101987 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_22357 0 0 0 0 2 ARHGAP31 chr3:119102073 5'GT 119102073 Upstream 87bp 20702 chr19 36562587 36562587 1 + G T LUAD 36562588 + 36562568 36562608 41 GCCCAAGCCACACTACCTTGGGGTAGACGTGGCACAGGGCC GCCCAAGCCACACTACCTTTGGGTAGACGTGGCACAGGGCC < 41bp 0.384812659954233 0.741022604217065 NA NA prediction 0.48204520843413 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36562588 chr19:36562587 nonsynonymous SNV 0.690 4 20 hm7G_associated_SNPs_22358 0 0 0 0 1 WDR62 chr19:36562618 5'GT 36562618 Upstream 32bp 20703 chr22 44965302 44965302 1 + G T UCEC 44965303 + 44965283 44965323 41 GAAATGTCCTCTACCTTGAGGGAGGCGTGTGACATGGGAGT GAAATGTCCTCTACCTTGATGGAGGCGTGTGACATGGGAGT < 41bp 0.436431439773771 0.740975407497139 NA NA prediction 0.481950814994277 Functional Gain - LINC00207 ENSG00000187012 ncRNA_exonic Human lincRNA chr22:44965303 chr22:44965302 . . 0 20 hm7G_associated_SNPs_22364 0 0 0 0 1 LINC00207 chr22:44965321 5'GT 44965321 Upstream 20bp 20704 chr19 50784922 50784922 1 + G T LUSC 50784923 + 50784903 50784943 41 GGGAGGAGGCACGGCGCCGGGCAGCCCGGGAGGCCGAGGCC GGGAGGAGGCACGGCGCCGTGCAGCCCGGGAGGCCGAGGCC < 41bp 0.383484123180397 0.740966367906037 NA NA prediction 0.481932735812075 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50784923 chr19:50784922 synonymous SNV . 0 20 hm7G_associated_SNPs_22365 0 0 0 0 1 MYH14 chr19:50784851 3'AG 50784851 Downstream 72bp 20705 chr11 12241956 12241956 1 + G T HNSC 12241957 + 12241937 12241977 41 GCGGCCCTGGTGCGGGAGCGGCAGGCGCACCAGCTGCTCGT GCGGCCCTGGTGCGGGAGCTGCAGGCGCACCAGCTGCTCGT < 41bp 0.402146609850426 0.740930252906211 NA NA prediction 0.481860505812421 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12241957 chr11:12241956 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_22366 0 0 1 0 1 MICAL2 chr11:12242005 5'GT 12242005 Upstream 50bp 20706 chr3 186792112 186792112 1 + G T THCA 186792113 + 186792093 186792133 41 GCCAAACCCCCCATCCTCTGGGATGCTTGGTGAGTTCATGT GCCAAACCCCCCATCCTCTTGGATGCTTGGTGAGTTCATGT < 41bp 0.392525177700329 0.740926090011216 NA NA prediction 0.481852180022433 Functional Gain - ST6GAL1 ENSG00000073849 CDS Human protein_coding chr3:186792113 chr3:186792112 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_22367 0 0 1 0 1 ST6GAL1 chr3:186792121 5'GT 186792121 Upstream 10bp 20707 chr12 113871992 113871992 1 + G T UCEC 113871993 + 113871973 113872013 41 TGGCCAAGAGGGACGGCTGGGAGAATGTCCCCCCGTTTGAC TGGCCAAGAGGGACGGCTGTGAGAATGTCCCCCCGTTTGAC < 41bp 0.392142516914656 0.74092055889342 NA NA prediction 0.48184111778684 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871993 chr12:113871992 nonsynonymous SNV 0.908 1 20 hm7G_associated_SNPs_22369 0 0 0 0 2 SDSL chr12:113871939 3'AG 113871939 Downstream 54bp 20708 chr12 113871992 113871992 1 + G T UCEC 113871993 + 113871973 113872013 41 TGGCCAAGAGGGACGGCTGGGAGAATGTCCCCCCGTTTGAC TGGCCAAGAGGGACGGCTGTGAGAATGTCCCCCCGTTTGAC < 41bp 0.392142516914656 0.74092055889342 NA NA prediction 0.48184111778684 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113871993 chr12:113871992 nonsynonymous SNV 0.908 1 20 hm7G_associated_SNPs_22369 0 0 0 0 2 SDSL chr12:113872027 5'GT 113872027 Upstream 36bp 20709 chr5 71499604 71499604 1 + G T GBM 71499605 + 71499585 71499625 41 ACGCTTTGTTGGAAGGAAAGGCTCAGTGGGGCAGCAACATG ACGCTTTGTTGGAAGGAAATGCTCAGTGGGGCAGCAACATG < 41bp 0.63813374183443 0.879045125168385 NA NA prediction 0.481822766667911 Functional Gain - MAP1B ENSG00000131711 CDS Human protein_coding chr5:71499605 chr5:71499604 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_22372 0 0 1 0 1 MAP1B chr5:71499628 5'GT 71499628 Upstream 25bp 20710 chr2 27121530 27121530 1 + G T STAD 27121531 + 27121511 27121551 41 CAAGGTGATTGATGCCACAGGAAAACTGGTGATCCCTGGTG CAAGGTGATTGATGCCACATGAAAACTGGTGATCCCTGGTG < 41bp 0.391908440590602 0.740904179471625 NA NA prediction 0.48180835894325 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27121531 chr2:27121530 stopgain 0.928 1 20 hm7G_associated_SNPs_22373 0 0 1 0 1 DPYSL5 chr2:27121628 5'GT 27121628 Upstream 99bp 20711 chr10 60380632 60380632 1 + G T COAD 60380633 + 60380613 60380653 41 AGCTGCTGCTGAAGGGAAAGGCAGAAGTGGGGAAGACTTTT AGCTGCTGCTGAAGGGAAATGCAGAAGTGGGGAAGACTTTT < 41bp 0.623854185884678 0.864722332310204 NA NA prediction 0.481736292851053 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60380633 chr10:60380632 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22375 0 0 0 0 2 BICC1 chr10:60380615 3'AG 60380615 Downstream 18bp 20712 chr10 60380632 60380632 1 + G T COAD 60380633 + 60380613 60380653 41 AGCTGCTGCTGAAGGGAAAGGCAGAAGTGGGGAAGACTTTT AGCTGCTGCTGAAGGGAAATGCAGAAGTGGGGAAGACTTTT < 41bp 0.623854185884678 0.864722332310204 NA NA prediction 0.481736292851053 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60380633 chr10:60380632 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22375 0 0 0 0 2 BICC1 chr10:60380661 5'GT 60380661 Upstream 30bp 20713 chr20 56139401 56139401 1 + G T UCEC 56139402 + 56139382 56139422 41 TGATGAGCCGCTAGCTTCAGGTGTCACCATCACGTCCTGGA TGATGAGCCGCTAGCTTCATGTGTCACCATCACGTCCTGGA < 41bp 0.404010108159758 0.740847542465748 NA NA prediction 0.481695084931496 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56139402 chr20:56139401 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_22377 0 0 1 0 1 PCK1 chr20:56139449 5'GT 56139449 Upstream 49bp 20714 chr17 48433928 48433928 1 + G T UCEC 48433929 + 48433909 48433949 41 AGTCGACTGTGAACCAGGAGGTGCTGGAAATCCTGGACTTC AGTCGACTGTGAACCAGGATGTGCTGGAAATCCTGGACTTC < 41bp 0.400381537094931 0.740838534737511 NA NA prediction 0.481677069475023 Functional Gain - XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48433929 chr17:48433928 nonsynonymous SNV 0.960 4 20 hm7G_associated_SNPs_22379 0 0 1 0 1 XYLT2 chr17:48433872 3'AG 48433872 Downstream 57bp 20715 chr20 36396439 36396439 1 + G T ESCA 36396440 + 36396420 36396460 41 CTACAGTGGCTGTTGAAGAGGCTGAAGGTGAGTTTGGCTGT CTACAGTGGCTGTTGAAGATGCTGAAGGTGAGTTTGGCTGT < 41bp 0.635103644600844 0.87587531522769 NA NA prediction 0.481543341253691 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36396440 chr20:36396439 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22384 0 0 1 0 2 CTNNBL1 chr20:36396355 3'AG 36396355 Downstream 85bp 20716 chr20 36396439 36396439 1 + G T ESCA 36396440 + 36396420 36396460 41 CTACAGTGGCTGTTGAAGAGGCTGAAGGTGAGTTTGGCTGT CTACAGTGGCTGTTGAAGATGCTGAAGGTGAGTTTGGCTGT < 41bp 0.635103644600844 0.87587531522769 NA NA prediction 0.481543341253691 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36396440 chr20:36396439 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22384 0 0 1 0 2 CTNNBL1 chr20:36396446 5'GT 36396446 Upstream 8bp 20717 chr2 37599545 37599545 1 + G T UCEC 37599546 + 37599526 37599566 41 TCAAGGATCACTCTTTGGAGGGGCGGTATTTCCAGAATTAC TCAAGGATCACTCTTTGGATGGGCGGTATTTCCAGAATTAC < 41bp 0.640592121073651 0.8813593652331 NA NA prediction 0.481534488318899 Functional Gain - QPCT ENSG00000115828 CDS Human protein_coding chr2:37599546 chr2:37599545 nonsynonymous SNV 0.609 1 20 hm7G_associated_SNPs_22385 0 0 1 0 2 QPCT chr2:37599499 3'AG 37599499 Downstream 47bp 20718 chr2 37599545 37599545 1 + G T UCEC 37599546 + 37599526 37599566 41 TCAAGGATCACTCTTTGGAGGGGCGGTATTTCCAGAATTAC TCAAGGATCACTCTTTGGATGGGCGGTATTTCCAGAATTAC < 41bp 0.640592121073651 0.8813593652331 NA NA prediction 0.481534488318899 Functional Gain - QPCT ENSG00000115828 CDS Human protein_coding chr2:37599546 chr2:37599545 nonsynonymous SNV 0.609 1 20 hm7G_associated_SNPs_22385 0 0 1 0 2 QPCT chr2:37599615 5'GT 37599615 Upstream 71bp 20719 chr10 112647497 112647497 1 + G T LGG 112647498 + 112647478 112647518 41 CAGTATCCTTAGCATTGGAGGGGAAGGCTAGTCATAGAGAG CAGTATCCTTAGCATTGGATGGGAAGGCTAGTCATAGAGAG < 41bp 0.638585855929201 0.879328709344328 NA NA prediction 0.481485706830254 Functional Gain - PDCD4 ENSG00000150593 CDS Human protein_coding chr10:112647498 chr10:112647497 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_22386 0 0 1 0 1 PDCD4 chr10:112647423 3'AG 112647423 Downstream 75bp 20720 chr1 60312791 60312791 1 + G T STAD 60312792 + 60312772 60312812 41 CTAATCGAATTCCAGCATAGGAATGATGAATTGACTAGTCT CTAATCGAATTCCAGCATATGAATGATGAATTGACTAGTCT < 41bp 0.415639465320095 0.74073762480952 NA NA prediction 0.48147524961904 Functional Gain - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60312792 chr1:60312791 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22387 0 0 1 0 2 HOOK1 chr1:60312717 3'AG 60312717 Downstream 75bp 20721 chr1 60312791 60312791 1 + G T STAD 60312792 + 60312772 60312812 41 CTAATCGAATTCCAGCATAGGAATGATGAATTGACTAGTCT CTAATCGAATTCCAGCATATGAATGATGAATTGACTAGTCT < 41bp 0.415639465320095 0.74073762480952 NA NA prediction 0.48147524961904 Functional Gain - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60312792 chr1:60312791 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22387 0 0 1 0 2 HOOK1 chr1:60312857 5'GT 60312857 Upstream 67bp 20722 chr17 7160292 7160292 1 + G T HNSC 7160293 + 7160273 7160313 41 GACTGAGGTGACCCTGGGCGGTACCATGGGCCAGGCCTCGG GACTGAGGTGACCCTGGGCTGTACCATGGGCCAGGCCTCGG < 41bp 0.643256971707482 0.883985316830634 NA NA prediction 0.481456690246303 Functional Gain - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7160293 chr17:7160292 nonsynonymous SNV 0.043 3 20 hm7G_associated_SNPs_22389 0 0 1 0 1 ELP5 chr17:7160357 5'GT 7160357 Upstream 66bp 20723 chr5 23524559 23524559 1 + G T SARC 23524560 + 23524540 23524580 41 GGCTGTGAACTGCTGGTCTGGTATGGGGATGAATACGGCCA GGCTGTGAACTGCTGGTCTTGTATGGGGATGAATACGGCCA < 41bp 0.644202559472987 0.884907849637699 NA NA prediction 0.481410580329424 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524560 chr5:23524559 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_22391 0 0 0 0 1 PRDM9 chr5:23524636 5'GT 23524636 Upstream 78bp 20724 chr7 99445221 99445221 1 + G T CHOL 99445222 + 99445202 99445242 41 TCACCAGTGTAAAATTCAAGGAAGTAAGAAAATAAGGTGAT TCACCAGTGTAAAATTCAATGAAGTAAGAAAATAAGGTGAT < 41bp 0.439573401827735 0.74070220228596 NA NA prediction 0.48140440457192 Functional Gain - CYP3A43 ENSG00000021461 CDS Human protein_coding chr7:99445222 chr7:99445221 nonsynonymous SNV 0.013 4 20 hm7G_associated_SNPs_22393 0 0 0 0 2 CYP3A43 chr7:99445224 5'GT 99445224 Upstream 4bp 20725 chr7 99445221 99445221 1 + G T CHOL 99445222 + 99445202 99445242 41 TCACCAGTGTAAAATTCAAGGAAGTAAGAAAATAAGGTGAT TCACCAGTGTAAAATTCAATGAAGTAAGAAAATAAGGTGAT < 41bp 0.439573401827735 0.74070220228596 NA NA prediction 0.48140440457192 Functional Gain - CYP3A43 ENSG00000021461 CDS Human protein_coding chr7:99445222 chr7:99445221 nonsynonymous SNV 0.013 4 20 hm7G_associated_SNPs_22393 0 0 0 0 2 CYP3A43 chr7:99445282 5'GT 99445282 Upstream 62bp 20726 chr7 134931196 134931196 1 + G T LUAD 134931197 + 134931177 134931217 41 ACTTTTACAAACAGACGATGGACCTTCTGACTGGCAGCGGG ACTTTTACAAACAGACGATTGACCTTCTGACTGGCAGCGGG < 41bp 0.650654734801843 0.891353490353839 NA NA prediction 0.481397511103993 Functional Gain - STRA8 ENSG00000146857 CDS Human protein_coding chr7:134931197 chr7:134931196 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_22394 0 0 0 0 1 STRA8 chr7:134931169 3'AG 134931169 Downstream 28bp 20727 chr19 45317915 45317915 1 + G T LUSC 45317916 + 45317896 45317936 41 GGGGAACTTGACCCTGGAGGGAGTGACCCGGGGCCAGAGCG GGGGAACTTGACCCTGGAGTGAGTGACCCGGGGCCAGAGCG < 41bp 0.399182490549112 0.740678736177207 NA NA prediction 0.481357472354414 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45317916 chr19:45317915 stopgain 0.014 0 20 hm7G_associated_SNPs_22395 0 0 1 0 1 BCAM chr19:45317861 3'AG 45317861 Downstream 55bp 20728 chr19 50154183 50154183 1 + G T LUAD 50154184 + 50154164 50154204 41 GTCACCTCACCTTGGGCACGGGAGACGGGGGCCCTGCCCCA GTCACCTCACCTTGGGCACTGGAGACGGGGGCCCTGCCCCA < 41bp 0.64308801593055 0.88374826709209 NA NA prediction 0.481320502323082 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50154184 chr19:50154183 synonymous SNV . 0 20 hm7G_associated_SNPs_22396 0 0 1 0 1 SCAF1 chr19:50154125 3'AG 50154125 Downstream 59bp 20729 chr5 32786366 32786366 1 + G T COAD 32786367 + 32786347 32786387 41 TACAGAATAACCATTGAGAGGCGAACCCAGCAAGAAGAAAG TACAGAATAACCATTGAGATGCGAACCCAGCAAGAAGAAAG < 41bp 0.616858607878735 0.857511992170206 NA NA prediction 0.481306768582943 Functional Gain - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32786367 chr5:32786366 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22399 0 0 0 0 1 NPR3 chr5:32786340 3'AG 32786340 Downstream 27bp 20730 chr19 2994023 2994023 1 + G T ESCA 2994024 + 2994004 2994044 41 CCATTTCTCCCAGGCCAGTGGTGGGCAAGCGTTGGAATGGA CCATTTCTCCCAGGCCAGTTGTGGGCAAGCGTTGGAATGGA < 41bp 0.636531911632502 0.877185154554938 NA NA prediction 0.481306485844872 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994024 chr19:2994023 nonsynonymous SNV 0.898 3 20 hm7G_associated_SNPs_22400 0 0 0 0 2 TLE6 chr19:2994017 3'AG 2994017 Downstream 7bp 20731 chr19 2994023 2994023 1 + G T ESCA 2994024 + 2994004 2994044 41 CCATTTCTCCCAGGCCAGTGGTGGGCAAGCGTTGGAATGGA CCATTTCTCCCAGGCCAGTTGTGGGCAAGCGTTGGAATGGA < 41bp 0.636531911632502 0.877185154554938 NA NA prediction 0.481306485844872 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994024 chr19:2994023 nonsynonymous SNV 0.898 3 20 hm7G_associated_SNPs_22400 0 0 0 0 2 TLE6 chr19:2994093 5'GT 2994093 Upstream 71bp 20732 chr4 156680962 156680962 1 + G T LUAD 156680963 + 156680943 156680983 41 GATTTGTGAATCACGCCCTGGAGTTGCTGGTGATCCGCAAT GATTTGTGAATCACGCCCTTGAGTTGCTGGTGATCCGCAAT < 41bp 0.583330989701665 0.823983221773166 NA NA prediction 0.481304464143002 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156680963 chr4:156680962 synonymous SNV . 0 20 hm7G_associated_SNPs_22401 0 0 0 0 2 GUCY1B3 chr4:156680939 3'AG 156680939 Downstream 24bp 20733 chr4 156680962 156680962 1 + G T LUAD 156680963 + 156680943 156680983 41 GATTTGTGAATCACGCCCTGGAGTTGCTGGTGATCCGCAAT GATTTGTGAATCACGCCCTTGAGTTGCTGGTGATCCGCAAT < 41bp 0.583330989701665 0.823983221773166 NA NA prediction 0.481304464143002 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156680963 chr4:156680962 synonymous SNV . 0 20 hm7G_associated_SNPs_22401 0 0 0 0 2 GUCY1B3 chr4:156681012 5'GT 156681012 Upstream 51bp 20734 chr17 4721858 4721858 1 + G T STAD 4721859 + 4721839 4721879 41 TCGAGGGTGACATCTCCACGGGCGGTGGCAACTCCATCCAG TCGAGGGTGACATCTCCACTGGCGGTGGCAACTCCATCCAG < 41bp 0.38537799739861 0.740631412591823 NA NA prediction 0.481262825183647 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4721859 chr17:4721858 synonymous SNV . 0 20 hm7G_associated_SNPs_22402 0 0 0 0 2 PLD2 chr17:4721789 3'AG 4721789 Downstream 70bp 20735 chr17 4721858 4721858 1 + G T STAD 4721859 + 4721839 4721879 41 TCGAGGGTGACATCTCCACGGGCGGTGGCAACTCCATCCAG TCGAGGGTGACATCTCCACTGGCGGTGGCAACTCCATCCAG < 41bp 0.38537799739861 0.740631412591823 NA NA prediction 0.481262825183647 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4721859 chr17:4721858 synonymous SNV . 0 20 hm7G_associated_SNPs_22402 0 0 0 0 2 PLD2 chr17:4721902 5'GT 4721902 Upstream 45bp 20736 chr12 122690947 122690947 1 + G T COAD 122690948 + 122690928 122690968 41 GGCTGCCTGCTCTTCCTGAGGAAGGCGGCCAAGCCCGCAGG GGCTGCCTGCTCTTCCTGATGAAGGCGGCCAAGCCCGCAGG < 41bp 0.63922061726651 0.879840314204892 NA NA prediction 0.481239393876765 Functional Gain - B3GNT4 ENSG00000176383 CDS Human protein_coding chr12:122690948 chr12:122690947 nonsynonymous SNV 0.432 1 20 hm7G_associated_SNPs_22403 0 0 0 0 1 B3GNT4 chr12:122690865 3'AG 122690865 Downstream 83bp 20737 chr14 45564460 45564460 1 + G T UCEC 45564461 + 45564441 45564481 41 ATATGCAAAATTCTCACATGGATGAATACAGAAATTCTAGT ATATGCAAAATTCTCACATTGATGAATACAGAAATTCTAGT < 41bp 0.423872214768955 0.740612773044101 NA NA prediction 0.481225546088202 Functional Gain - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45564461 chr14:45564460 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_22405 0 0 1 0 1 PRPF39 chr14:45564424 3'AG 45564424 Downstream 37bp 20738 chr3 130686221 130686221 1 + G T BLCA 130686222 + 130686202 130686242 41 TTAGAAACAATACTCTAATGGGGAAGCCAACAGAAGGGGCC TTAGAAACAATACTCTAATTGGGAAGCCAACAGAAGGGGCC < 41bp 0.411578080026706 0.740609077447493 NA NA prediction 0.481218154894986 Functional Gain - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130686222 chr3:130686221 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_22406 0 0 1 0 2 ATP2C1 chr3:130686174 3'AG 130686174 Downstream 48bp 20739 chr3 130686221 130686221 1 + G T BLCA 130686222 + 130686202 130686242 41 TTAGAAACAATACTCTAATGGGGAAGCCAACAGAAGGGGCC TTAGAAACAATACTCTAATTGGGAAGCCAACAGAAGGGGCC < 41bp 0.411578080026706 0.740609077447493 NA NA prediction 0.481218154894986 Functional Gain - ATP2C1 ENSG00000017260 CDS Human protein_coding chr3:130686222 chr3:130686221 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_22406 0 0 1 0 2 ATP2C1 chr3:130686263 5'GT 130686263 Upstream 43bp 20740 chr12 7065331 7065331 1 + G T LUSC 7065332 + 7065312 7065352 41 CAGCCGAGTGATCCTGCAGGGACGGGACAGTAACATCCCCG CAGCCGAGTGATCCTGCAGTGACGGGACAGTAACATCCCCG < 41bp 0.389099870700855 0.740596969333059 NA NA prediction 0.481193938666117 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7065332 chr12:7065331 stopgain 1.000 0 20 hm7G_associated_SNPs_22407 0 0 0 0 2 PTPN6 chr12:7065305 3'AG 7065305 Downstream 27bp 20741 chr12 7065331 7065331 1 + G T LUSC 7065332 + 7065312 7065352 41 CAGCCGAGTGATCCTGCAGGGACGGGACAGTAACATCCCCG CAGCCGAGTGATCCTGCAGTGACGGGACAGTAACATCCCCG < 41bp 0.389099870700855 0.740596969333059 NA NA prediction 0.481193938666117 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7065332 chr12:7065331 stopgain 1.000 0 20 hm7G_associated_SNPs_22407 0 0 0 0 2 PTPN6 chr12:7065384 5'GT 7065384 Upstream 54bp 20742 chr19 55087569 55087569 1 + G T LUAD 55087570 + 55087550 55087590 41 GTGACCCCCTGGAGCTCGTGGTCTCAGGTGAGGGCCCTGAT GTGACCCCCTGGAGCTCGTTGTCTCAGGTGAGGGCCCTGAT < 41bp 0.411845990828048 0.740559248903645 NA NA prediction 0.481118497807291 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55087570 chr19:55087569 synonymous SNV . 0 20 hm7G_associated_SNPs_22409 0 0 0 0 1 LILRA2 chr19:55087576 5'GT 55087576 Upstream 8bp 20743 chr19 56009542 56009542 1 + G T UCEC 56009543 + 56009523 56009563 41 ACAACTGCGCTCACAATGAGGATGTTGGGGTCACCTGCACT ACAACTGCGCTCACAATGATGATGTTGGGGTCACCTGCACT < 41bp 0.397504016460301 0.740557548639995 NA NA prediction 0.48111509727999 Functional Gain - SSC5D ENSG00000179954 CDS Human protein_coding chr19:56009543 chr19:56009542 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_22410 0 0 0 0 1 SSC5D chr19:56009564 5'GT 56009564 Upstream 23bp 20744 chr8 79609678 79609678 1 + G T ESCA 79609679 + 79609659 79609699 41 TAAAAAGTCAAATTCTCCTGGAACTGCATCATCAGGATCTT TAAAAAGTCAAATTCTCCTTGAACTGCATCATCAGGATCTT < 41bp 0.635478081170308 0.876027985274847 NA NA prediction 0.481099808209078 Functional Gain - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79609679 chr8:79609678 stopgain 0.995 0 20 hm7G_associated_SNPs_22411 0 0 1 0 2 ZC2HC1A chr8:79609642 3'AG 79609642 Downstream 37bp 20745 chr8 79609678 79609678 1 + G T ESCA 79609679 + 79609659 79609699 41 TAAAAAGTCAAATTCTCCTGGAACTGCATCATCAGGATCTT TAAAAAGTCAAATTCTCCTTGAACTGCATCATCAGGATCTT < 41bp 0.635478081170308 0.876027985274847 NA NA prediction 0.481099808209078 Functional Gain - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79609679 chr8:79609678 stopgain 0.995 0 20 hm7G_associated_SNPs_22411 0 0 1 0 2 ZC2HC1A chr8:79609741 5'GT 79609741 Upstream 64bp 20746 chr1 236894586 236894586 1 + G T LUSC 236894587 + 236894567 236894607 41 AAATCGCTGAGAAGCACCTGGATATTCCTAAAATGTTGGAT AAATCGCTGAGAAGCACCTTGATATTCCTAAAATGTTGGAT < 41bp 0.538843526585105 0.779384983032171 NA NA prediction 0.481082912894131 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236894587 chr1:236894586 synonymous SNV . 0 20 hm7G_associated_SNPs_22413 0 0 1 0 1 ACTN2 chr1:236894614 5'GT 236894614 Upstream 29bp 20747 chr15 80872851 80872851 1 + G T BLCA 80872852 + 80872832 80872872 41 GGCAGCTAAACCAGAGTCAGGTGGCATGGACAGGGAGTCGT GGCAGCTAAACCAGAGTCATGTGGCATGGACAGGGAGTCGT < 41bp 0.402779394185351 0.740537801913779 NA NA prediction 0.481075603827557 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80872852 chr15:80872851 nonsynonymous SNV 0.963 3 20 hm7G_associated_SNPs_22414 0 0 0 0 2 ARNT2 chr15:80872752 3'AG 80872752 Downstream 100bp 20748 chr15 80872851 80872851 1 + G T BLCA 80872852 + 80872832 80872872 41 GGCAGCTAAACCAGAGTCAGGTGGCATGGACAGGGAGTCGT GGCAGCTAAACCAGAGTCATGTGGCATGGACAGGGAGTCGT < 41bp 0.402779394185351 0.740537801913779 NA NA prediction 0.481075603827557 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80872852 chr15:80872851 nonsynonymous SNV 0.963 3 20 hm7G_associated_SNPs_22414 0 0 0 0 2 ARNT2 chr15:80872890 5'GT 80872890 Upstream 40bp 20749 chr7 37890028 37890028 1 + G T UCEC 37890029 + 37890009 37890049 41 TGAGATGTTGCAGAACAAAGGCTTAACAGGTATAAGGACTC TGAGATGTTGCAGAACAAATGCTTAACAGGTATAAGGACTC < 41bp 0.633013351692356 0.873547436417012 NA NA prediction 0.481068169449311 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37890029 chr7:37890028 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_22415 1 0 0 0 2 NME8 chr7:37889980 3'AG 37889980 Downstream 49bp 20750 chr7 37890028 37890028 1 + G T UCEC 37890029 + 37890009 37890049 41 TGAGATGTTGCAGAACAAAGGCTTAACAGGTATAAGGACTC TGAGATGTTGCAGAACAAATGCTTAACAGGTATAAGGACTC < 41bp 0.633013351692356 0.873547436417012 NA NA prediction 0.481068169449311 Functional Gain - NME8 ENSG00000086288 CDS Human protein_coding chr7:37890029 chr7:37890028 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_22415 1 0 0 0 2 NME8 chr7:37890037 5'GT 37890037 Upstream 10bp 20751 chrX 12837720 12837720 1 + G T BLCA 12837721 + 12837701 12837741 41 GGACCGGATGGTCCTGGTGGGCGACGTGAAGGACCGTGTGG GGACCGGATGGTCCTGGTGTGCGACGTGAAGGACCGTGTGG < 41bp 0.640359624083359 0.880883581193064 NA NA prediction 0.48104791421941 Functional Gain - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12837721 chrX:12837720 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_22416 0 0 1 0 1 PRPS2 chrX:12837799 5'GT 12837799 Upstream 80bp 20752 chr10 116032548 116032548 1 + G T UCEC 116032549 + 116032529 116032569 41 GAAATACCTTCTGCACAGAGGGTTGCCTGGAGGCAGAAATG GAAATACCTTCTGCACAGATGGTTGCCTGGAGGCAGAAATG < 41bp 0.652736434458283 0.893239599533882 NA NA prediction 0.481006330151197 Functional Gain - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116032549 chr10:116032548 nonsynonymous SNV 0.977 5 20 hm7G_associated_SNPs_22418 0 0 0 0 1 VWA2 chr10:116032499 3'AG 116032499 Downstream 50bp 20753 chr6 35782495 35782495 1 + G T UCEC 35782496 + 35782476 35782516 41 CCCTCATCCTCTCCTTCCTGGCCTTCGTGTTGGGCTACCGG CCCTCATCCTCTCCTTCCTTGCCTTCGTGTTGGGCTACCGG < 41bp 0.650579943926046 0.891082415743252 NA NA prediction 0.481004943634412 Functional Gain - LHFPL5 ENSG00000197753 CDS Human protein_coding chr6:35782496 chr6:35782495 synonymous SNV . 0 20 hm7G_associated_SNPs_22419 0 0 0 0 1 LHFPL5 chr6:35782559 5'GT 35782559 Upstream 65bp 20754 chr19 15726455 15726455 1 + G T LUAD 15726456 + 15726436 15726476 41 GCTGAGCCTGTCTTGGCTGGGCCTCAGGCCGGTGGCAGCAT GCTGAGCCTGTCTTGGCTGTGCCTCAGGCCGGTGGCAGCAT < 41bp 0.61215785165412 0.852650393906505 NA NA prediction 0.480985084504769 Functional Gain - CYP4F8 ENSG00000186526 ncRNA_exonic Human protein_coding chr19:15726456 chr19:15726455 . 0.005 2 20 hm7G_associated_SNPs_22420 0 0 0 0 1 CYP4F8 chr19:15726427 3'AG 15726427 Downstream 29bp 20755 chr7 36194718 36194718 1 + G T UCEC 36194719 + 36194699 36194739 41 GATGGGAGGCCTGTGCTGAGGCTGGCCACCTGGAACTTGCA GATGGGAGGCCTGTGCTGATGCTGGCCACCTGGAACTTGCA < 41bp 0.39702070253389 0.740486848807538 NA NA prediction 0.480973697615077 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36194719 chr7:36194718 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_22421 0 0 0 0 1 EEPD1 chr7:36194811 5'GT 36194811 Upstream 94bp 20756 chr5 38925343 38925343 1 + G T LUAD 38925344 + 38925324 38925364 41 AATACAAAATTGACAACCCGGAAGAAAAGGCATTGATTGTG AATACAAAATTGACAACCCTGAAGAAAAGGCATTGATTGTG < 41bp 0.416960470486433 0.740486273472059 NA NA prediction 0.480972546944119 Functional Gain - OSMR ENSG00000145623 CDS Human protein_coding chr5:38925344 chr5:38925343 synonymous SNV . 0 20 hm7G_associated_SNPs_22422 0 0 0 0 1 OSMR chr5:38925306 3'AG 38925306 Downstream 38bp 20757 chr1 156553591 156553591 1 + G T UCEC 156553592 + 156553572 156553612 41 ATCCACCCTCTTCCCAGAAGGAGCCAGATTCTGTGCGAGAA ATCCACCCTCTTCCCAGAATGAGCCAGATTCTGTGCGAGAA < 41bp 0.637172614259501 0.877644059547495 NA NA prediction 0.480942890575988 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156553592 chr1:156553591 nonsynonymous SNV 0.897 1 20 hm7G_associated_SNPs_22423 0 0 0 0 2 TTC24 chr1:156553589 3'AG 156553589 Downstream 3bp 20758 chr1 156553591 156553591 1 + G T UCEC 156553592 + 156553572 156553612 41 ATCCACCCTCTTCCCAGAAGGAGCCAGATTCTGTGCGAGAA ATCCACCCTCTTCCCAGAATGAGCCAGATTCTGTGCGAGAA < 41bp 0.637172614259501 0.877644059547495 NA NA prediction 0.480942890575988 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156553592 chr1:156553591 nonsynonymous SNV 0.897 1 20 hm7G_associated_SNPs_22423 0 0 0 0 2 TTC24 chr1:156553687 5'GT 156553687 Upstream 97bp 20759 chr18 59895607 59895607 1 + G T LUAD 59895608 + 59895588 59895628 41 ACTCTGTTCAGCCTCCTTTGGATCAGTTGCCCCACAAAGAC ACTCTGTTCAGCCTCCTTTTGATCAGTTGCCCCACAAAGAC < 41bp 0.408652803487098 0.740467560362293 NA NA prediction 0.480935120724586 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59895608 chr18:59895607 nonsynonymous SNV 0.943 0 20 hm7G_associated_SNPs_22424 0 0 1 0 1 KIAA1468 chr18:59895538 3'AG 59895538 Downstream 70bp 20760 chr7 142561960 142561960 1 + G T LUAD 142561961 + 142561941 142561981 41 TCACCCTTTACTACCGTCAGGCTGAGGAGCCCGACAGCCCT TCACCCTTTACTACCGTCATGCTGAGGAGCCCGACAGCCCT < 41bp 0.652933603406894 0.893397219676939 NA NA prediction 0.48092723254009 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142561961 chr7:142561960 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_22425 0 0 0 0 1 EPHB6 chr7:142562020 5'GT 142562020 Upstream 61bp 20761 chr16 57702274 57702274 1 + G T rs62039891 57702275 + 57702255 57702295 41 CAAGGATGGCGACGCCCAGGGGCCTGGGGGCCCTGCTCCTG CAAGGATGGCGACGCCCAGTGGCCTGGGGGCCCTGCTCCTG < 41bp 0.405914372351434 0.740463155999819 NA NA prediction 0.480926311999639 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57702275 chr16:57702274 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_22426 0 0 0 0 1 ADGRG3 chr16:57702317 5'GT 57702317 Upstream 44bp 20762 chr7 156746815 156746815 1 + G T LUAD 156746816 + 156746796 156746836 41 GGTTGAGTGAACCCAACATGGCTTCCATCAGTGGGCAGCTG GGTTGAGTGAACCCAACATTGCTTCCATCAGTGGGCAGCTG < 41bp 0.64824473695991 0.888704633673408 NA NA prediction 0.480919793426998 Functional Gain - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156746816 chr7:156746815 nonsynonymous SNV 0.181 0 20 hm7G_associated_SNPs_22428 0 0 1 0 1 NOM1 chr7:156746797 3'AG 156746797 Downstream 19bp 20763 chr3 42572402 42572402 1 + G T LUSC 42572403 + 42572383 42572423 41 CTGAGCGGAAGTACTTCTGGGGGTACATACTCATCGGCTGG CTGAGCGGAAGTACTTCTGTGGGTACATACTCATCGGCTGG < 41bp 0.40001637392413 0.740457891324349 NA NA prediction 0.480915782648698 Functional Gain - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42572403 chr3:42572402 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22429 0 0 0 0 2 VIPR1 chr3:42572404 5'GT 42572404 Upstream 3bp 20764 chr3 42572402 42572402 1 + G T LUSC 42572403 + 42572383 42572423 41 CTGAGCGGAAGTACTTCTGGGGGTACATACTCATCGGCTGG CTGAGCGGAAGTACTTCTGTGGGTACATACTCATCGGCTGG < 41bp 0.40001637392413 0.740457891324349 NA NA prediction 0.480915782648698 Functional Gain - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42572403 chr3:42572402 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22429 0 0 0 0 2 VIPR1 chr3:42572424 5'GT 42572424 Upstream 23bp 20765 chr11 105804648 105804648 1 + G T OV 105804649 + 105804629 105804669 41 TGAAAGTGGGAGGAAATCTGGATTCCAAAGGCTATGGAGTA TGAAAGTGGGAGGAAATCTTGATTCCAAAGGCTATGGAGTA < 41bp 0.42575299792054 0.740453146393164 NA NA prediction 0.480906292786328 Functional Gain - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105804649 chr11:105804648 synonymous SNV . 0 20 hm7G_associated_SNPs_22430 0 0 0 0 1 GRIA4 chr11:105804695 5'GT 105804695 Upstream 48bp 20766 chr1 155036335 155036335 1 + G T COAD 155036336 + 155036316 155036356 41 TGCTGCGGACTGTCCTCTGGGCCGCGTTCCTCGGCTCCCCT TGCTGCGGACTGTCCTCTGTGCCGCGTTCCTCGGCTCCCCT < 41bp 0.412514738645736 0.740406159046219 NA NA prediction 0.480812318092438 Functional Gain - EFNA4 ENSG00000143590;ENSG00000243364;ENSG00000251246 CDS Human other chr1:155036336 chr1:155036335 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_22434 0 0 1 0 1 EFNA4 chr1:155036412 5'GT 155036412 Upstream 78bp 20767 chr1 16350408 16350408 1 + G T SKCM 16350409 + 16350389 16350429 41 TGCCATGAACTTTGCCATCGGGTGTGTGGTCCGAGGTAACT TGCCATGAACTTTGCCATCTGGTGTGTGGTCCGAGGTAACT < 41bp 0.400874428958509 0.740403310546265 NA NA prediction 0.48080662109253 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16350409 chr1:16350408 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_22435 0 0 0 0 1 CLCNKA chr1:16350423 5'GT 16350423 Upstream 16bp 20768 chr13 40261896 40261896 1 + G T UCS 40261897 + 40261877 40261917 41 AAGCTACTGCTTCTGAAAAGGAACACCTTGAAGCTCTCTTA AAGCTACTGCTTCTGAAAATGAACACCTTGAAGCTCTCTTA < 41bp 0.411859451310593 0.740397124517148 NA NA prediction 0.480794249034296 Functional Gain - COG6 ENSG00000133103 CDS Human protein_coding chr13:40261897 chr13:40261896 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22436 0 0 1 0 2 COG6 chr13:40261845 3'AG 40261845 Downstream 52bp 20769 chr13 40261896 40261896 1 + G T UCS 40261897 + 40261877 40261917 41 AAGCTACTGCTTCTGAAAAGGAACACCTTGAAGCTCTCTTA AAGCTACTGCTTCTGAAAATGAACACCTTGAAGCTCTCTTA < 41bp 0.411859451310593 0.740397124517148 NA NA prediction 0.480794249034296 Functional Gain - COG6 ENSG00000133103 CDS Human protein_coding chr13:40261897 chr13:40261896 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22436 0 0 1 0 2 COG6 chr13:40261936 5'GT 40261936 Upstream 41bp 20770 chr14 39584095 39584095 1 + G T UCEC 39584096 + 39584076 39584116 41 GACCCAAAGAAGTTGAAAAGGAAGCAAAGTGTGAATATTTC GACCCAAAGAAGTTGAAAATGAAGCAAAGTGTGAATATTTC < 41bp 0.620871812401976 0.861257350234587 NA NA prediction 0.480771075665222 Functional Gain - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39584096 chr14:39584095 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22437 0 0 1 3 2 GEMIN2 chr14:39584033 3'AG 39584033 Downstream 63bp 20771 chr14 39584095 39584095 1 + G T UCEC 39584096 + 39584076 39584116 41 GACCCAAAGAAGTTGAAAAGGAAGCAAAGTGTGAATATTTC GACCCAAAGAAGTTGAAAATGAAGCAAAGTGTGAATATTTC < 41bp 0.620871812401976 0.861257350234587 NA NA prediction 0.480771075665222 Functional Gain - GEMIN2 ENSG00000092208 CDS Human protein_coding chr14:39584096 chr14:39584095 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22437 0 0 1 3 2 GEMIN2 chr14:39584117 5'GT 39584117 Upstream 23bp 20772 chr21 30693622 30693622 1 + G T LIHC 30693623 + 30693603 30693643 41 TGTCTCTGAGTGAGAACTCGGTTTTTGCCTATGAATCTTCT TGTCTCTGAGTGAGAACTCTGTTTTTGCCTATGAATCTTCT < 41bp 0.421625658590356 0.740384515076424 NA NA prediction 0.480769030152847 Functional Gain - BACH1 ENSG00000156273 CDS Human protein_coding chr21:30693623 chr21:30693622 synonymous SNV . 0 20 hm7G_associated_SNPs_22438 0 0 1 0 1 BACH1 chr21:30693542 3'AG 30693542 Downstream 81bp 20773 chr7 139655336 139655336 1 + G T COAD 139655337 + 139655317 139655357 41 ACTCCTGGCAGGCCCCTGAGGATCCCTTTGTGAAACACTGC ACTCCTGGCAGGCCCCTGATGATCCCTTTGTGAAACACTGC < 41bp 0.385991672300707 0.740373381880093 NA NA prediction 0.480746763760185 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655337 chr7:139655336 nonsynonymous SNV 0.055 0 20 hm7G_associated_SNPs_22441 0 0 1 0 2 TBXAS1 chr7:139655258 3'AG 139655258 Downstream 79bp 20774 chr7 139655336 139655336 1 + G T COAD 139655337 + 139655317 139655357 41 ACTCCTGGCAGGCCCCTGAGGATCCCTTTGTGAAACACTGC ACTCCTGGCAGGCCCCTGATGATCCCTTTGTGAAACACTGC < 41bp 0.385991672300707 0.740373381880093 NA NA prediction 0.480746763760185 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139655337 chr7:139655336 nonsynonymous SNV 0.055 0 20 hm7G_associated_SNPs_22441 0 0 1 0 2 TBXAS1 chr7:139655406 5'GT 139655406 Upstream 71bp 20775 chr1 57161618 57161618 1 + G T UCEC 57161619 + 57161599 57161639 41 TTTTCTTAGATTGTATGCAGGTCCTGAAGTTGATATCTGGA TTTTCTTAGATTGTATGCATGTCCTGAAGTTGATATCTGGA < 41bp 0.442171328120631 0.740371798108297 NA NA prediction 0.480743596216593 Functional Gain - PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57161619 chr1:57161618 nonsynonymous SNV 0.088 4 20 hm7G_associated_SNPs_22442 0 0 1 0 1 PRKAA2 chr1:57161608 3'AG 57161608 Downstream 11bp 20776 chr15 75189921 75189921 1 + G T UCEC 75189922 + 75189902 75189942 41 GCATCCTCCTGATGGTACAGGGGACAGTAATAGCCAGCACA GCATCCTCCTGATGGTACATGGGACAGTAATAGCCAGCACA < 41bp 0.635719242595762 0.876074037477181 NA NA prediction 0.480709589762839 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75189922 chr15:75189921 nonsynonymous SNV 0.516 1 20 hm7G_associated_SNPs_22445 0 0 1 2 1 MPI chr15:75189853 3'AG 75189853 Downstream 69bp 20777 chr1 218458743 218458743 1 + G T BLCA 218458744 + 218458724 218458764 41 GAAGATGAAAATGGTAACTGGAGCCGTAGCGTCGGTGCTGG GAAGATGAAAATGGTAACTTGAGCCGTAGCGTCGGTGCTGG < 41bp 0.445283567303078 0.740349168547607 NA NA prediction 0.480698337095214 Functional Gain - RRP15 ENSG00000067533 CDS Human protein_coding chr1:218458744 chr1:218458743 stopgain 0.016 0 20 hm7G_associated_SNPs_22446 0 0 1 0 1 RRP15 chr1:218458797 5'GT 218458797 Upstream 55bp 20778 chr1 156347212 156347212 1 + G T SARC 156347213 + 156347193 156347233 41 GCCGCCTTTGCCCTGCAGTGGTCCACACTGGTCCAGGGCTT GCCGCCTTTGCCCTGCAGTTGTCCACACTGGTCCAGGGCTT < 41bp 0.405942802446643 0.740329063249428 NA NA prediction 0.480658126498855 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347213 chr1:156347212 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_22448 0 0 0 0 1 RHBG chr1:156347278 5'GT 156347278 Upstream 67bp 20779 chr5 137230085 137230085 1 + G T LUAD 137230086 + 137230066 137230106 41 GGTCTGTACTGGGATTCATGGTACAATAACCAGCAGCTGTA GGTCTGTACTGGGATTCATTGTACAATAACCAGCAGCTGTA < 41bp 0.424766122402673 0.74032106687263 NA NA prediction 0.48064213374526 Functional Gain - PKD2L2 ENSG00000078795 CDS Human protein_coding chr5:137230086 chr5:137230085 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_22449 0 0 0 0 1 PKD2L2 chr5:137230042 3'AG 137230042 Downstream 44bp 20780 chr14 24772360 24772360 1 + G T LUSC 24772361 + 24772341 24772381 41 CAGGGGTAGTCATTGCCCTGGTGGGGGCCTGTCGCAGAGTT CAGGGGTAGTCATTGCCCTTGTGGGGGCCTGTCGCAGAGTT < 41bp 0.403376891699054 0.74029011594748 NA NA prediction 0.480580231894961 Functional Gain - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772361 chr14:24772360 synonymous SNV . 0 20 hm7G_associated_SNPs_22451 0 0 1 0 2 NOP9 chr14:24772280 3'AG 24772280 Downstream 81bp 20781 chr14 24772360 24772360 1 + G T LUSC 24772361 + 24772341 24772381 41 CAGGGGTAGTCATTGCCCTGGTGGGGGCCTGTCGCAGAGTT CAGGGGTAGTCATTGCCCTTGTGGGGGCCTGTCGCAGAGTT < 41bp 0.403376891699054 0.74029011594748 NA NA prediction 0.480580231894961 Functional Gain - NOP9 ENSG00000196943 CDS Human protein_coding chr14:24772361 chr14:24772360 synonymous SNV . 0 20 hm7G_associated_SNPs_22451 0 0 1 0 2 NOP9 chr14:24772420 5'GT 24772420 Upstream 61bp 20782 chr6 43402404 43402404 1 + G T THCA 43402405 + 43402385 43402425 41 TCGGGTCATCAAGTTCTGCGGGTGGGAGCAGGCACTGGGAG TCGGGTCATCAAGTTCTGCTGGTGGGAGCAGGCACTGGGAG < 41bp 0.65605135886118 0.896321629112528 NA NA prediction 0.480540540502696 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43402405 chr6:43402404 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_22454 0 0 1 0 1 ABCC10 chr6:43402359 3'AG 43402359 Downstream 46bp 20783 chr19 58189441 58189441 1 + G T UCEC 58189442 + 58189422 58189462 41 AGATACTTCCTTAGAAACAGGACAAGGTAAGTCAGGTGAAT AGATACTTCCTTAGAAACATGACAAGGTAAGTCAGGTGAAT < 41bp 0.615546458844429 0.855802052477284 NA NA prediction 0.48051118726571 Functional Gain - ZSCAN4 ENSG00000180532 CDS Human protein_coding chr19:58189442 chr19:58189441 stopgain 0.968 0 20 hm7G_associated_SNPs_22457 0 0 0 0 1 ZSCAN4 chr19:58189447 5'GT 58189447 Upstream 7bp 20784 chr1 203455842 203455842 1 + G T LUSC 203455843 + 203455823 203455863 41 TTTTTCCGTAGAAATCAACGGAACCCAGATTTGCCCCAACG TTTTTCCGTAGAAATCAACTGAACCCAGATTTGCCCCAACG < 41bp 0.623937725704138 0.864190785766351 NA NA prediction 0.480506120124425 Functional Gain - PRELP ENSG00000188783 CDS Human protein_coding chr1:203455843 chr1:203455842 stopgain 0.998 1 20 hm7G_associated_SNPs_22458 0 0 0 0 1 PRELP chr1:203455834 3'AG 203455834 Downstream 9bp 20785 chr19 52876450 52876450 1 + G T UCEC 52876451 + 52876431 52876471 41 CTCAGAGGACTTTATACAGGGAAGTGATGGTGGAGAACTAC CTCAGAGGACTTTATACAGTGAAGTGATGGTGGAGAACTAC < 41bp 0.642663506490881 0.88291171460469 NA NA prediction 0.480496416227618 Functional Gain - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52876451 chr19:52876450 nonsynonymous SNV 0.010 1 20 hm7G_associated_SNPs_22459 0 0 1 0 2 ZNF880 chr19:52876364 3'AG 52876364 Downstream 87bp 20786 chr19 52876450 52876450 1 + G T UCEC 52876451 + 52876431 52876471 41 CTCAGAGGACTTTATACAGGGAAGTGATGGTGGAGAACTAC CTCAGAGGACTTTATACAGTGAAGTGATGGTGGAGAACTAC < 41bp 0.642663506490881 0.88291171460469 NA NA prediction 0.480496416227618 Functional Gain - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52876451 chr19:52876450 nonsynonymous SNV 0.010 1 20 hm7G_associated_SNPs_22459 0 0 1 0 2 ZNF880 chr19:52876490 5'GT 52876490 Upstream 41bp 20787 chr17 29195353 29195353 1 + G T LIHC 29195354 + 29195334 29195374 41 ATGTTTTCTTGTGGCAGTTGGTTGAAAGACTGGAAAAGAAG ATGTTTTCTTGTGGCAGTTTGTTGAAAGACTGGAAAAGAAG < 41bp 0.617845026475412 0.858081639367201 NA NA prediction 0.480473225783578 Functional Gain - ATAD5 ENSG00000176208 CDS Human protein_coding chr17:29195354 chr17:29195353 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22461 0 0 1 0 2 ATAD5 chr17:29195351 3'AG 29195351 Downstream 3bp 20788 chr17 29195353 29195353 1 + G T LIHC 29195354 + 29195334 29195374 41 ATGTTTTCTTGTGGCAGTTGGTTGAAAGACTGGAAAAGAAG ATGTTTTCTTGTGGCAGTTTGTTGAAAGACTGGAAAAGAAG < 41bp 0.617845026475412 0.858081639367201 NA NA prediction 0.480473225783578 Functional Gain - ATAD5 ENSG00000176208 CDS Human protein_coding chr17:29195354 chr17:29195353 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22461 0 0 1 0 2 ATAD5 chr17:29195430 5'GT 29195430 Upstream 78bp 20789 chr14 73418519 73418519 1 + G T UCEC 73418520 + 73418500 73418540 41 TTCCAGGCTATGCCTCATGGGACTCGCAGAGACTCCAGGCT TTCCAGGCTATGCCTCATGTGACTCGCAGAGACTCCAGGCT < 41bp 0.397345129966881 0.740231362996917 NA NA prediction 0.480462725993835 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73418520 chr14:73418519 stopgain 0.978 1 20 hm7G_associated_SNPs_22462 0 0 0 0 2 DCAF4 chr14:73418506 3'AG 73418506 Downstream 14bp 20790 chr14 73418519 73418519 1 + G T UCEC 73418520 + 73418500 73418540 41 TTCCAGGCTATGCCTCATGGGACTCGCAGAGACTCCAGGCT TTCCAGGCTATGCCTCATGTGACTCGCAGAGACTCCAGGCT < 41bp 0.397345129966881 0.740231362996917 NA NA prediction 0.480462725993835 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73418520 chr14:73418519 stopgain 0.978 1 20 hm7G_associated_SNPs_22462 0 0 0 0 2 DCAF4 chr14:73418585 5'GT 73418585 Upstream 67bp 20791 chr3 126138947 126138947 1 + G T UCEC 126138948 + 126138928 126138968 41 TTCCTCTGCTTTCTCCAGAGGGTCAGGGTACAAAGAAGCCC TTCCTCTGCTTTCTCCAGATGGTCAGGGTACAAAGAAGCCC < 41bp 0.63584677730978 0.876069298072504 NA NA prediction 0.48044504152545 Functional Gain - CFAP100 ENSG00000163885 CDS Human protein_coding chr3:126138948 chr3:126138947 nonsynonymous SNV 0.034 0 20 hm7G_associated_SNPs_22464 0 0 0 0 1 CFAP100 chr3:126138946 3'AG 126138946 Downstream 2bp 20792 chrX 18912363 18912363 1 + G T LUAD 18912364 + 18912344 18912384 41 CTGGCCATCTGCACGATCTGGTCCACGTGGATGATGCCCCC CTGGCCATCTGCACGATCTTGTCCACGTGGATGATGCCCCC < 41bp 0.632618118053295 0.872833222227245 NA NA prediction 0.480430208347898 Functional Gain - PHKA2 ENSG00000044446 CDS Human antisense chrX:18912364 chrX:18912363 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22467 0 0 0 0 1 PHKA2-AS1 chrX:18912265 3'AG 18912265 Downstream 99bp 20793 chr20 62187088 62187088 1 + G T SKCM 62187089 + 62187069 62187109 41 CCCAGTCCTTCCTGGACCAGGAGGAGGCAGATGACCAGCAG CCCAGTCCTTCCTGGACCATGAGGAGGCAGATGACCAGCAG < 41bp 0.628657794456533 0.868872826894988 NA NA prediction 0.480430064876911 Functional Gain - FNDC11 ENSG00000125531 CDS Human protein_coding chr20:62187089 chr20:62187088 nonsynonymous SNV 0.881 0 20 hm7G_associated_SNPs_22468 0 0 0 0 1 FNDC11 chr20:62187007 3'AG 62187007 Downstream 82bp 20794 chr4 129131032 129131032 1 + G T TGCT 129131033 + 129131013 129131053 41 CCCTATTAGTGATGAATTTGGAAGAAAAAGACATTCCTCTA CCCTATTAGTGATGAATTTTGAAGAAAAAGACATTCCTCTA < 41bp 0.594691558571522 0.834895369701691 NA NA prediction 0.480407622260337 Functional Gain - LARP1B ENSG00000138709 CDS Human protein_coding chr4:129131033 chr4:129131032 stopgain 0.999 1 20 hm7G_associated_SNPs_22471 0 0 1 3 1 LARP1B chr4:129131011 3'AG 129131011 Downstream 22bp 20795 chr14 103167650 103167650 1 + G T BRCA 103167651 + 103167631 103167671 41 CATTGCCAAAGAAAAGCATGGGTACAACATGGAACAGGTAA CATTGCCAAAGAAAAGCATTGGTACAACATGGAACAGGTAA < 41bp 0.642424863579339 0.882622916958126 NA NA prediction 0.480396106757573 Functional Gain - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103167651 chr14:103167650 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_22472 0 0 1 0 2 RCOR1 chr14:103167615 3'AG 103167615 Downstream 36bp 20796 chr14 103167650 103167650 1 + G T BRCA 103167651 + 103167631 103167671 41 CATTGCCAAAGAAAAGCATGGGTACAACATGGAACAGGTAA CATTGCCAAAGAAAAGCATTGGTACAACATGGAACAGGTAA < 41bp 0.642424863579339 0.882622916958126 NA NA prediction 0.480396106757573 Functional Gain - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103167651 chr14:103167650 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_22472 0 0 1 0 2 RCOR1 chr14:103167667 5'GT 103167667 Upstream 18bp 20797 chr21 47533969 47533969 1 + G T STAD 47533970 + 47533950 47533990 41 CTGGGCCCTCTGGCCCCAAGGGCTACCGTGGACAGAAGGTA CTGGGCCCTCTGGCCCCAATGGCTACCGTGGACAGAAGGTA < 41bp 0.380937988842841 0.740188080178664 NA NA prediction 0.480376160357329 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47533970 chr21:47533969 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_22473 0 0 1 0 2 COL6A2 chr21:47533922 3'AG 47533922 Downstream 48bp 20798 chr21 47533969 47533969 1 + G T STAD 47533970 + 47533950 47533990 41 CTGGGCCCTCTGGCCCCAAGGGCTACCGTGGACAGAAGGTA CTGGGCCCTCTGGCCCCAATGGCTACCGTGGACAGAAGGTA < 41bp 0.380937988842841 0.740188080178664 NA NA prediction 0.480376160357329 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47533970 chr21:47533969 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_22473 0 0 1 0 2 COL6A2 chr21:47533987 5'GT 47533987 Upstream 19bp 20799 chr16 8870227 8870227 1 + G T THCA 8870228 + 8870208 8870248 41 GGATCTTCAACACCTGGCTGGGGGACCCGTCCAAGAACCTG GGATCTTCAACACCTGGCTTGGGGACCCGTCCAAGAACCTG < 41bp 0.387968314823244 0.740179046123656 NA NA prediction 0.480358092247311 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8870228 chr16:8870227 synonymous SNV . 0 20 hm7G_associated_SNPs_22475 0 0 1 0 1 ABAT chr16:8870201 3'AG 8870201 Downstream 27bp 20800 chr3 127393421 127393421 1 + G T OV 127393422 + 127393402 127393442 41 TGTGTGGGCACGAGGAGCTGGTACTCTACCTTCTGGCCAAT TGTGTGGGCACGAGGAGCTTGTACTCTACCTTCTGGCCAAT < 41bp 0.434298356476766 0.740161671969278 NA NA prediction 0.480323343938555 Functional Gain - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127393422 chr3:127393421 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_22476 0 0 1 0 2 ABTB1 chr3:127393388 3'AG 127393388 Downstream 34bp 20801 chr3 127393421 127393421 1 + G T OV 127393422 + 127393402 127393442 41 TGTGTGGGCACGAGGAGCTGGTACTCTACCTTCTGGCCAAT TGTGTGGGCACGAGGAGCTTGTACTCTACCTTCTGGCCAAT < 41bp 0.434298356476766 0.740161671969278 NA NA prediction 0.480323343938555 Functional Gain - ABTB1 ENSG00000114626 CDS Human protein_coding chr3:127393422 chr3:127393421 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_22476 0 0 1 0 2 ABTB1 chr3:127393443 5'GT 127393443 Upstream 23bp 20802 chr4 56225592 56225592 1 + G T STAD 56225593 + 56225573 56225613 41 TACTCAATCTCTGTTCCTGGGAGCACCTTTTCCAAGCTGGC TACTCAATCTCTGTTCCTGTGAGCACCTTTTCCAAGCTGGC < 41bp 0.403047691829924 0.740128525834908 NA NA prediction 0.480257051669817 Functional Gain - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56225593 chr4:56225592 stopgain 0.987 0 20 hm7G_associated_SNPs_22478 0 0 1 0 1 SRD5A3 chr4:56225513 3'AG 56225513 Downstream 80bp 20803 chr5 161116013 161116013 1 + G T UCEC 161116014 + 161115994 161116034 41 GATGAGAGGTTGAAGTTTGGGGGGCCAACTGAGATTCTGAG GATGAGAGGTTGAAGTTTGTGGGGCCAACTGAGATTCTGAG < 41bp 0.6300216580817 0.870122314231757 NA NA prediction 0.480201312300114 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116014 chr5:161116013 nonsynonymous SNV 0.506 0 20 hm7G_associated_SNPs_22480 0 0 0 0 1 GABRA6 chr5:161115955 3'AG 161115955 Downstream 59bp 20804 chr1 205034969 205034969 1 + G T UCEC 205034970 + 205034950 205034990 41 GCCCAGCTGCGCCATGGGGGGAAGTACACGTGCATGGCCCA GCCCAGCTGCGCCATGGGGTGAAGTACACGTGCATGGCCCA < 41bp 0.389475443910229 0.740090760897312 NA NA prediction 0.480181521794623 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205034970 chr1:205034969 nonsynonymous SNV 0.768 4 20 hm7G_associated_SNPs_22483 0 0 0 0 2 CNTN2 chr1:205034917 3'AG 205034917 Downstream 53bp 20805 chr1 205034969 205034969 1 + G T UCEC 205034970 + 205034950 205034990 41 GCCCAGCTGCGCCATGGGGGGAAGTACACGTGCATGGCCCA GCCCAGCTGCGCCATGGGGTGAAGTACACGTGCATGGCCCA < 41bp 0.389475443910229 0.740090760897312 NA NA prediction 0.480181521794623 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205034970 chr1:205034969 nonsynonymous SNV 0.768 4 20 hm7G_associated_SNPs_22483 0 0 0 0 2 CNTN2 chr1:205035037 5'GT 205035037 Upstream 69bp 20806 chr2 118860814 118860814 1 + G T LUAD 118860815 + 118860795 118860835 41 CTGCATTGACAGACATCTAGGAGAACCACATAAATTTAAAA CTGCATTGACAGACATCTATGAGAACCACATAAATTTAAAA < 41bp 0.413999701887029 0.740088263653781 NA NA prediction 0.480176527307563 Functional Gain - INSIG2 ENSG00000125629 CDS Human protein_coding chr2:118860815 chr2:118860814 stopgain 1.000 1 20 hm7G_associated_SNPs_22484 0 0 1 0 1 INSIG2 chr2:118860897 5'GT 118860897 Upstream 84bp 20807 chr7 20721220 20721220 1 + G T LUAD 20721221 + 20721201 20721241 41 CCCTAAAGGATGGAATGCTGGCGGAGAAAGGAGCACATGCT CCCTAAAGGATGGAATGCTTGCGGAGAAAGGAGCACATGCT < 41bp 0.634125578278827 0.874171230982308 NA NA prediction 0.480091305406962 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20721221 chr7:20721220 synonymous SNV . 0 20 hm7G_associated_SNPs_22487 0 0 0 0 2 ABCB5 chr7:20721128 3'AG 20721128 Downstream 93bp 20808 chr7 20721220 20721220 1 + G T LUAD 20721221 + 20721201 20721241 41 CCCTAAAGGATGGAATGCTGGCGGAGAAAGGAGCACATGCT CCCTAAAGGATGGAATGCTTGCGGAGAAAGGAGCACATGCT < 41bp 0.634125578278827 0.874171230982308 NA NA prediction 0.480091305406962 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20721221 chr7:20721220 synonymous SNV . 0 20 hm7G_associated_SNPs_22487 0 0 0 0 2 ABCB5 chr7:20721289 5'GT 20721289 Upstream 70bp 20809 chr3 119232541 119232541 1 + G T GBM 119232542 + 119232522 119232562 41 CCTGCGTGGCCTGGTGGCTGGTGGCATAATTGGAGCCTTGC CCTGCGTGGCCTGGTGGCTTGTGGCATAATTGGAGCCTTGC < 41bp 0.636880439298961 0.876925354938076 NA NA prediction 0.480089831278229 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119232542 chr3:119232541 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_22488 0 0 1 0 2 TIMMDC1 chr3:119232488 3'AG 119232488 Downstream 54bp 20810 chr3 119232541 119232541 1 + G T GBM 119232542 + 119232522 119232562 41 CCTGCGTGGCCTGGTGGCTGGTGGCATAATTGGAGCCTTGC CCTGCGTGGCCTGGTGGCTTGTGGCATAATTGGAGCCTTGC < 41bp 0.636880439298961 0.876925354938076 NA NA prediction 0.480089831278229 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119232542 chr3:119232541 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_22488 0 0 1 0 2 TIMMDC1 chr3:119232566 5'GT 119232566 Upstream 26bp 20811 chr5 57913636 57913636 1 + G T LUAD 57913637 + 57913617 57913657 41 GCATTCGTCAGCACAGTTGGGATCGATTTCAAAGTAAAAAC GCATTCGTCAGCACAGTTGTGATCGATTTCAAAGTAAAAAC < 41bp 0.412398331969691 0.740030569154288 NA NA prediction 0.480061138308575 Functional Gain - RAB3C ENSG00000152932 CDS Human protein_coding chr5:57913637 chr5:57913636 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_22490 0 0 0 0 1 RAB3C chr5:57913697 5'GT 57913697 Upstream 62bp 20812 chr15 91428411 91428411 1 + G T UCEC 91428412 + 91428392 91428432 41 GAGTGACAGGGAGTATGCAGGACTGCTTCACCACATGTCCC GAGTGACAGGGAGTATGCATGACTGCTTCACCACATGTCCC < 41bp 0.392977097381077 0.740013239248851 NA NA prediction 0.480026478497702 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91428412 chr15:91428411 stopgain 0.415 0 20 hm7G_associated_SNPs_22493 0 0 0 0 1 FES chr15:91428488 5'GT 91428488 Upstream 78bp 20813 chr19 15132512 15132512 1 + G T LUSC 15132513 + 15132493 15132533 41 AGAGTTGTACACCACCCACGGTCTCATCAAGGTACGGTTCG AGAGTTGTACACCACCCACTGTCTCATCAAGGTACGGTTCG < 41bp 0.415062666034886 0.739998163904426 NA NA prediction 0.479996327808852 Functional Gain - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15132513 chr19:15132512 nonsynonymous SNV 0.368 3 20 hm7G_associated_SNPs_22494 0 0 0 0 2 CCDC105 chr19:15132428 3'AG 15132428 Downstream 85bp 20814 chr19 15132512 15132512 1 + G T LUSC 15132513 + 15132493 15132533 41 AGAGTTGTACACCACCCACGGTCTCATCAAGGTACGGTTCG AGAGTTGTACACCACCCACTGTCTCATCAAGGTACGGTTCG < 41bp 0.415062666034886 0.739998163904426 NA NA prediction 0.479996327808852 Functional Gain - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15132513 chr19:15132512 nonsynonymous SNV 0.368 3 20 hm7G_associated_SNPs_22494 0 0 0 0 2 CCDC105 chr19:15132523 5'GT 15132523 Upstream 12bp 20815 chr14 73727987 73727987 1 + G T UCEC 73727988 + 73727968 73728008 41 TCTTGGGGAAGGCTGTGTGGGCCAGCCCAGCCATGGTGAGT TCTTGGGGAAGGCTGTGTGTGCCAGCCCAGCCATGGTGAGT < 41bp 0.388139064086853 0.739993880493463 NA NA prediction 0.479987760986925 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73727988 chr14:73727987 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_22495 0 0 0 0 1 PAPLN chr14:73728002 5'GT 73728002 Upstream 16bp 20816 chr12 51064995 51064995 1 + G T LUAD 51064996 + 51064976 51065016 41 TTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTG TTCGGCCTCTGAGGATGAGTGCTCTCTGAGACGCCAAGCTG < 41bp 0.399823915994068 0.739993173161794 NA NA prediction 0.479986346323589 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51064996 chr12:51064995 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22496 0 0 0 0 1 DIP2B chr12:51064969 3'AG 51064969 Downstream 27bp 20817 chr5 169535415 169535415 1 + G T LUAD 169535416 + 169535396 169535436 41 TGAGCCCAGTGACAAGACGGGGCAGAACTCACTGACCTTCA TGAGCCCAGTGACAAGACGTGGCAGAACTCACTGACCTTCA < 41bp 0.627031983501712 0.867000198309753 NA NA prediction 0.47993642961608 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535416 chr5:169535415 nonsynonymous SNV 0.656 3 20 hm7G_associated_SNPs_22499 0 0 0 0 1 FOXI1 chr5:169535338 3'AG 169535338 Downstream 78bp 20818 chr6 42883782 42883782 1 + G T SARC 42883783 + 42883763 42883803 41 GCAACTCAGGTCTGCAGCTGGGTCCTGCCTCCTTCCGAGTG GCAACTCAGGTCTGCAGCTTGGTCCTGCCTCCTTCCGAGTG < 41bp 0.52442648311918 0.764380986120378 NA NA prediction 0.479909006002396 Functional Gain - PTCRA ENSG00000171611 UTR5 Human protein_coding chr6:42883783 chr6:42883782 . . 0 20 hm7G_associated_SNPs_22502 0 0 0 0 1 PTCRA chr6:42883865 5'GT 42883865 Upstream 84bp 20819 chr2 241533437 241533437 1 + G T LUAD 241533438 + 241533418 241533458 41 CAGAACCCCTGGGGCCGGCGGTGCTGGCAGGGGCTCTGGAG CAGAACCCCTGGGGCCGGCTGTGCTGGCAGGGGCTCTGGAG < 41bp 0.407753614917114 0.739935068415954 NA NA prediction 0.479870136831907 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241533438 chr2:241533437 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_22504 0 0 0 0 1 CAPN10 chr2:241533464 5'GT 241533464 Upstream 28bp 20820 chr12 120527790 120527790 1 + G T UCEC 120527791 + 120527771 120527811 41 CTGGAACTTGCCAAGTGCAGGATGGATATGATGTCTCTGAA CTGGAACTTGCCAAGTGCATGATGGATATGATGTCTCTGAA < 41bp 0.642089845783652 0.882016170274479 NA NA prediction 0.479852648981652 Functional Gain - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120527791 chr12:120527790 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_22505 0 0 0 0 2 BICDL1 chr12:120527755 3'AG 120527755 Downstream 36bp 20821 chr12 120527790 120527790 1 + G T UCEC 120527791 + 120527771 120527811 41 CTGGAACTTGCCAAGTGCAGGATGGATATGATGTCTCTGAA CTGGAACTTGCCAAGTGCATGATGGATATGATGTCTCTGAA < 41bp 0.642089845783652 0.882016170274479 NA NA prediction 0.479852648981652 Functional Gain - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120527791 chr12:120527790 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_22505 0 0 0 0 2 BICDL1 chr12:120527875 5'GT 120527875 Upstream 86bp 20822 chr17 4060161 4060161 1 + G T BRCA 4060162 + 4060142 4060182 41 CTTTCCGTCTATCCTTAGTGGAGGTGTGAGCAGAGACTGGA CTTTCCGTCTATCCTTAGTTGAGGTGTGAGCAGAGACTGGA < 41bp 0.632967145797741 0.872864862971003 NA NA prediction 0.479795434346524 Functional Gain - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4060162 chr17:4060161 stopgain 0.762 1 20 hm7G_associated_SNPs_22507 0 0 0 0 1 CYB5D2 chr17:4060160 3'AG 4060160 Downstream 2bp 20823 chr10 43595965 43595965 1 + G T HNSC 43595966 + 43595946 43595986 41 AGAAGCTGTATGTGGACCAGGCAGCCGGCACGCCCTTGCTG AGAAGCTGTATGTGGACCATGCAGCCGGCACGCCCTTGCTG < 41bp 0.385314640281494 0.739847205463885 NA NA prediction 0.479694410927769 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43595966 chr10:43595965 nonsynonymous SNV 0.829 4 20 hm7G_associated_SNPs_22512 0 0 0 0 1 RET chr10:43595907 3'AG 43595907 Downstream 59bp 20824 chr19 9449224 9449224 1 + G T UCEC 9449225 + 9449205 9449245 41 TCAAAATTTGAAGAGGAAAGGATGGTGGCTGGGTGGTTGAC TCAAAATTTGAAGAGGAAATGATGGTGGCTGGGTGGTTGAC < 41bp 0.460181946651388 0.739835090726317 NA NA prediction 0.479670181452634 Functional Gain - ZNF559 ENSG00000188321 CDS Human protein_coding chr19:9449225 chr19:9449224 nonsynonymous SNV 0.034 0 20 hm7G_associated_SNPs_22514 0 0 1 0 2 ZNF559 chr19:9449170 3'AG 9449170 Downstream 55bp 20825 chr19 9449224 9449224 1 + G T UCEC 9449225 + 9449205 9449245 41 TCAAAATTTGAAGAGGAAAGGATGGTGGCTGGGTGGTTGAC TCAAAATTTGAAGAGGAAATGATGGTGGCTGGGTGGTTGAC < 41bp 0.460181946651388 0.739835090726317 NA NA prediction 0.479670181452634 Functional Gain - ZNF559 ENSG00000188321 CDS Human other chr19:9449225 chr19:9449224 nonsynonymous SNV 0.034 0 20 hm7G_associated_SNPs_22514 0 0 1 0 2 ZNF559 chr19:9449258 5'GT 9449258 Upstream 35bp 20826 chr16 67579579 67579579 1 + G T ACC 67579580 + 67579560 67579600 41 TTTTCAGTGCTACTGGTGCGGAATCTGAACTCGGATGATCA TTTTCAGTGCTACTGGTGCTGAATCTGAACTCGGATGATCA < 41bp 0.641147042474721 0.880939614297814 NA NA prediction 0.479585143646186 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67579580 chr16:67579579 nonsynonymous SNV 0.768 2 20 hm7G_associated_SNPs_22516 0 0 0 0 1 RIPOR1 chr16:67579567 3'AG 67579567 Downstream 13bp 20827 chr16 85936694 85936694 1 + G T LUAD 85936695 + 85936675 85936715 41 TGACAGTAGCATGTATCCAGGACTGATTTGGGAGAATGAGG TGACAGTAGCATGTATCCATGACTGATTTGGGAGAATGAGG < 41bp 0.64617967377808 0.885970010626339 NA NA prediction 0.479580673696518 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85936695 chr16:85936694 stopgain 0.985 1 20 hm7G_associated_SNPs_22518 0 0 0 0 1 IRF8 chr16:85936621 3'AG 85936621 Downstream 74bp 20828 chr7 54610430 54610430 1 + G T COAD 54610431 + 54610411 54610451 41 CTCCCTTTTTGGAATGATGGGGATCTTTTTGGTGTATGTTG CTCCCTTTTTGGAATGATGTGGATCTTTTTGGTGTATGTTG < 41bp 0.419715105453146 0.739787195519407 NA NA prediction 0.479574391038814 Functional Gain - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54610431 chr7:54610430 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_22519 0 0 0 0 1 VSTM2A chr7:54610502 5'GT 54610502 Upstream 73bp 20829 chr17 79213403 79213403 1 + G T rs374420845 79213404 + 79213384 79213424 41 GGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGT GGTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGT < 41bp 0.649083866430061 0.888867848362797 NA NA prediction 0.479567963865472 Functional Gain - NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213404 chr17:79213403 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_22520 0 0 1 0 3 NDUFAF8 chr17:79213368 3'AG 79213368 Downstream 36bp 20830 chr17 79213403 79213403 1 + G T rs374420845 79213404 + 79213384 79213424 41 GGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGT GGTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGT < 41bp 0.649083866430061 0.888867848362797 NA NA prediction 0.479567963865472 Functional Gain - NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213404 chr17:79213403 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_22520 0 0 1 0 3 NDUFAF8 chr17:79213395 3'AG 79213395 Downstream 9bp 20831 chr17 79213403 79213403 1 + G T rs374420845 79213404 + 79213384 79213424 41 GGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGT GGTGCGTGCAGGCCTCCACTGCCCCGGGCGGCCGCCTGAGT < 41bp 0.649083866430061 0.888867848362797 NA NA prediction 0.479567963865472 Functional Gain - NDUFAF8 ENSG00000224877 CDS Human protein_coding chr17:79213404 chr17:79213403 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_22520 0 0 1 0 3 NDUFAF8 chr17:79213478 5'GT 79213478 Upstream 76bp 20832 chr1 28599904 28599904 1 + G T UCEC 28599905 + 28599885 28599925 41 GCGACGTGGAGGCGCTGATGGAGCGCATGCAGCAGCTGCAG GCGACGTGGAGGCGCTGATTGAGCGCATGCAGCAGCTGCAG < 41bp 0.650191166602111 0.889971407236792 NA NA prediction 0.479560481269362 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28599905 chr1:28599904 nonsynonymous SNV 0.975 2 20 hm7G_associated_SNPs_22521 0 0 1 0 1 SESN2 chr1:28599869 3'AG 28599869 Downstream 36bp 20833 chr8 56015841 56015841 1 + G T STAD 56015842 + 56015822 56015862 41 CATCCACATCTTGCAGCTCGGGCAAATCTGGAGGTACTGTA CATCCACATCTTGCAGCTCTGGCAAATCTGGAGGTACTGTA < 41bp 0.431762993162239 0.739770502477321 NA NA prediction 0.479541004954642 Functional Gain - XKR4 ENSG00000206579 CDS Human protein_coding chr8:56015842 chr8:56015841 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22523 0 0 0 0 1 XKR4 chr8:56015854 5'GT 56015854 Upstream 14bp 20834 chr10 69961617 69961617 1 + G T LUAD 69961618 + 69961598 69961638 41 AGAAAGCACCTGTGATCCTGGAGAAACTACAGAACTGCGGT AGAAAGCACCTGTGATCCTTGAGAAACTACAGAACTGCGGT < 41bp 0.412174836650062 0.739762631884491 NA NA prediction 0.479525263768982 Functional Gain - MYPN ENSG00000138347 CDS Human protein_coding chr10:69961618 chr10:69961617 synonymous SNV . 0 20 hm7G_associated_SNPs_22525 0 0 0 0 1 MYPN chr10:69961586 3'AG 69961586 Downstream 32bp 20835 chr8 2000374 2000374 1 + G T COAD 2000375 + 2000355 2000395 41 CTGGGAGGAACCATCTGCAGGGTCTGTGCGAAGCGAGTGAG CTGGGAGGAACCATCTGCATGGTCTGTGCGAAGCGAGTGAG < 41bp 0.38757741019211 0.739762192679512 NA NA prediction 0.479524385359024 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2000375 chr8:2000374 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_22526 0 0 0 0 2 MYOM2 chr8:2000276 3'AG 2000276 Downstream 99bp 20836 chr8 2000374 2000374 1 + G T COAD 2000375 + 2000355 2000395 41 CTGGGAGGAACCATCTGCAGGGTCTGTGCGAAGCGAGTGAG CTGGGAGGAACCATCTGCATGGTCTGTGCGAAGCGAGTGAG < 41bp 0.38757741019211 0.739762192679512 NA NA prediction 0.479524385359024 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2000375 chr8:2000374 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_22526 0 0 0 0 2 MYOM2 chr8:2000431 5'GT 2000431 Upstream 58bp 20837 chrX 14915307 14915307 1 + G T LUAD 14915308 + 14915288 14915328 41 TTATGCTAAGAGGGAAAATGGGAAACCTGTAACAGTGATGT TTATGCTAAGAGGGAAAATTGGAAACCTGTAACAGTGATGT < 41bp 0.631312929093885 0.871064618185907 NA NA prediction 0.479503378184043 Functional Gain - MOSPD2 ENSG00000130150 CDS Human protein_coding chrX:14915308 chrX:14915307 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22527 0 0 1 0 1 MOSPD2 chrX:14915360 5'GT 14915360 Upstream 54bp 20838 chr5 2753469 2753469 1 + G T LUAD 2753470 + 2753450 2753490 41 CCTGAGCCGGCAGGCTCCCGGTAGGCGCGGTCCAGGCACGT CCTGAGCCGGCAGGCTCCCTGTAGGCGCGGTCCAGGCACGT < 41bp 0.420415577999955 0.739744605047853 NA NA prediction 0.479489210095706 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2753470 chr5:2753469 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_22528 0 0 0 0 2 C5orf38 chr5:2753399 3'AG 2753399 Downstream 71bp 20839 chr5 2753469 2753469 1 + G T LUAD 2753470 + 2753450 2753490 41 CCTGAGCCGGCAGGCTCCCGGTAGGCGCGGTCCAGGCACGT CCTGAGCCGGCAGGCTCCCTGTAGGCGCGGTCCAGGCACGT < 41bp 0.420415577999955 0.739744605047853 NA NA prediction 0.479489210095706 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2753470 chr5:2753469 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_22528 0 0 0 0 2 C5orf38 chr5:2753469 5'GT 2753469 Upstream 1bp 20840 chr17 41584520 41584520 1 + G T UCEC 41584521 + 41584501 41584541 41 GAGTGGCAGCTATGTCGGTGGCCAAAAGAGTGTCAGAGGAG GAGTGGCAGCTATGTCGGTTGCCAAAAGAGTGTCAGAGGAG < 41bp 0.650484203039384 0.890225887118723 NA NA prediction 0.479483368158679 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41584521 chr17:41584520 synonymous SNV . 0 20 hm7G_associated_SNPs_22529 0 0 1 0 1 DHX8 chr17:41584565 5'GT 41584565 Upstream 46bp 20841 chr10 101439617 101439617 1 + G T UCEC 101439618 + 101439598 101439638 41 CTCTGCACAGCAGGCATGAGGCTTCTCCCTGAGAGGTGAGA CTCTGCACAGCAGGCATGATGCTTCTCCCTGAGAGGTGAGA < 41bp 0.404588990982131 0.739722600995311 NA NA prediction 0.479445201990623 Functional Gain - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101439618 chr10:101439617 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_22531 0 0 1 0 1 ENTPD7 chr10:101439632 5'GT 101439632 Upstream 16bp 20842 chr16 55706020 55706020 1 + G T LUAD 55706021 + 55706001 55706041 41 CGACCCCAAGCTCCTCAATGGCTCCGTGCTTGGCAACCACA CGACCCCAAGCTCCTCAATTGCTCCGTGCTTGGCAACCACA < 41bp 0.380792954537373 0.73971509422487 NA NA prediction 0.47943018844974 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55706021 chr16:55706020 nonsynonymous SNV 0.962 0 20 hm7G_associated_SNPs_22532 0 0 0 0 1 SLC6A2 chr16:55706087 5'GT 55706087 Upstream 68bp 20843 chr4 26585827 26585827 1 + G T UCEC 26585828 + 26585808 26585848 41 CAGGGGAAATGTTGCAGGAGGAGTCGGACCTCTCTCTCATT CAGGGGAAATGTTGCAGGATGAGTCGGACCTCTCTCTCATT < 41bp 0.418271187187667 0.739712229967959 NA NA prediction 0.479424459935919 Functional Gain - TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26585828 chr4:26585827 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_22534 0 0 0 0 1 TBC1D19 chr4:26585914 5'GT 26585914 Upstream 88bp 20844 chr1 161128000 161128000 1 + G T SKCM 161128001 + 161127981 161128021 41 GCTCATCTCATGGCTCTGGGGGTAAGTTTTGTGTATTTGGC GCTCATCTCATGGCTCTGGTGGTAAGTTTTGTGTATTTGGC < 41bp 0.638306723435006 0.878008700581565 NA NA prediction 0.479403954293117 Functional Gain - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161128001 chr1:161128000 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_22536 0 0 1 0 2 UFC1 chr1:161127911 3'AG 161127911 Downstream 90bp 20845 chr1 161128000 161128000 1 + G T SKCM 161128001 + 161127981 161128021 41 GCTCATCTCATGGCTCTGGGGGTAAGTTTTGTGTATTTGGC GCTCATCTCATGGCTCTGGTGGTAAGTTTTGTGTATTTGGC < 41bp 0.638306723435006 0.878008700581565 NA NA prediction 0.479403954293117 Functional Gain - UFC1 ENSG00000143222 CDS Human protein_coding chr1:161128001 chr1:161128000 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_22536 0 0 1 0 2 UFC1 chr1:161128001 5'GT 161128001 Upstream 2bp 20846 chr12 98991750 98991750 1 + G T LGG 98991751 + 98991731 98991771 41 TCCTTGGCTACTCCATGCAGGGACTCTGCAAGTTTGGCTTT TCCTTGGCTACTCCATGCATGGACTCTGCAAGTTTGGCTTT < 41bp 0.647038467823037 0.886735018960398 NA NA prediction 0.479393102274722 Functional Gain - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98991751 chr12:98991750 nonsynonymous SNV 0.820 4 20 hm7G_associated_SNPs_22537 0 0 1 0 1 SLC25A3 chr12:98991813 5'GT 98991813 Upstream 64bp 20847 chr9 96847571 96847571 1 + G T UCEC 96847572 + 96847552 96847592 41 ACCAAAGTACACAAAAGTAGGGGAGCGTTTACGGCATGTCA ACCAAAGTACACAAAAGTATGGGAGCGTTTACGGCATGTCA < 41bp 0.647330889592241 0.887024143977516 NA NA prediction 0.479386508770551 Functional Gain - PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96847572 chr9:96847571 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_22538 0 0 0 0 1 PTPDC1 chr9:96847533 3'AG 96847533 Downstream 39bp 20848 chr11 49805577 49805577 1 + G T LUSC 49805578 + 49805558 49805598 41 CGGTGAGAGGTCTGCTGATGGCCATGAGGCGCCTGGGTCTA CGGTGAGAGGTCTGCTGATTGCCATGAGGCGCCTGGGTCTA < 41bp 0.612521031021516 0.852195171215136 NA NA prediction 0.479348280387239 Functional Gain - LOC440040 ENSG00000205035 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:49805578 chr11:49805577 . . 0 20 hm7G_associated_SNPs_22542 0 0 0 0 1 LOC440040 chr11:49805624 5'GT 49805624 Upstream 48bp 20849 chr1 186280656 186280656 1 + G T LUAD 186280657 + 186280637 186280677 41 AGGATTTGGAGGACTAACTGGACAAATAGTGGCAGCGCTTT AGGATTTGGAGGACTAACTTGACAAATAGTGGCAGCGCTTT < 41bp 0.640293872972887 0.879956852336274 NA NA prediction 0.479325958726773 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186280657 chr1:186280656 stopgain 0.979 1 20 hm7G_associated_SNPs_22543 0 0 0 1 2 PRG4 chr1:186280572 3'AG 186280572 Downstream 85bp 20850 chr1 186280656 186280656 1 + G T LUAD 186280657 + 186280637 186280677 41 AGGATTTGGAGGACTAACTGGACAAATAGTGGCAGCGCTTT AGGATTTGGAGGACTAACTTGACAAATAGTGGCAGCGCTTT < 41bp 0.640293872972887 0.879956852336274 NA NA prediction 0.479325958726773 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186280657 chr1:186280656 stopgain 0.979 1 20 hm7G_associated_SNPs_22543 0 0 0 1 2 PRG4 chr1:186280728 5'GT 186280728 Upstream 73bp 20851 chr2 31457640 31457640 1 + G T UCEC 31457641 + 31457621 31457661 41 TCCACTCGCCCGCCCTGGAGGATGCCGACTTCGACAACAAG TCCACTCGCCCGCCCTGGATGATGCCGACTTCGACAACAAG < 41bp 0.640761322483831 0.880421604957934 NA NA prediction 0.479320564948207 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31457641 chr2:31457640 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22544 0 0 0 0 1 EHD3 chr2:31457714 5'GT 31457714 Upstream 75bp 20852 chr16 56903726 56903726 1 + G T UCEC 56903727 + 56903707 56903747 41 CCATCTCCACCAATGGCAAGGTCAAGTCAGGTGGGCCATCC CCATCTCCACCAATGGCAATGTCAAGTCAGGTGGGCCATCC < 41bp 0.395547106578122 0.739654090025944 NA NA prediction 0.479308180051888 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56903727 chr16:56903726 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22545 0 0 0 0 2 SLC12A3 chr16:56903641 3'AG 56903641 Downstream 86bp 20853 chr16 56903726 56903726 1 + G T UCEC 56903727 + 56903707 56903747 41 CCATCTCCACCAATGGCAAGGTCAAGTCAGGTGGGCCATCC CCATCTCCACCAATGGCAATGTCAAGTCAGGTGGGCCATCC < 41bp 0.395547106578122 0.739654090025944 NA NA prediction 0.479308180051888 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56903727 chr16:56903726 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22545 0 0 0 0 2 SLC12A3 chr16:56903736 5'GT 56903736 Upstream 11bp 20854 chr2 68804988 68804988 1 + G T LUAD 68804989 + 68804969 68805009 41 GAAGATAATGATAATGTTGGGCAACCCAATGAGTATGACCT GAAGATAATGATAATGTTGTGCAACCCAATGAGTATGACCT < 41bp 0.612942251226713 0.852571341475862 NA NA prediction 0.479258180498298 Functional Gain - APLF ENSG00000169621 CDS Human protein_coding chr2:68804989 chr2:68804988 nonsynonymous SNV 0.068 4 20 hm7G_associated_SNPs_22548 0 0 0 0 1 APLF chr2:68804952 3'AG 68804952 Downstream 37bp 20855 chr11 71208569 71208569 1 + G T LUAD 71208570 + 71208550 71208590 41 GCGGAGCTCTCGGTCTATGGGAAACTCAGGAAGGTGGCCAA GCGGAGCTCTCGGTCTATGTGAAACTCAGGAAGGTGGCCAA < 41bp 0.645695675083219 0.885313833164677 NA NA prediction 0.479236316162917 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71208570 chr11:71208569 nonsynonymous SNV 0.371 4 20 hm7G_associated_SNPs_22549 0 0 1 0 2 NADSYN1 chr11:71208529 3'AG 71208529 Downstream 41bp 20856 chr11 71208569 71208569 1 + G T LUAD 71208570 + 71208550 71208590 41 GCGGAGCTCTCGGTCTATGGGAAACTCAGGAAGGTGGCCAA GCGGAGCTCTCGGTCTATGTGAAACTCAGGAAGGTGGCCAA < 41bp 0.645695675083219 0.885313833164677 NA NA prediction 0.479236316162917 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71208570 chr11:71208569 nonsynonymous SNV 0.371 4 20 hm7G_associated_SNPs_22549 0 0 1 0 2 NADSYN1 chr11:71208657 5'GT 71208657 Upstream 89bp 20857 chr15 63889858 63889858 1 + G T UCEC 63889859 + 63889839 63889879 41 TGCAGGTGTGCAGCATTGAGGACTGGCTCAAGAGTGCCTTC TGCAGGTGTGCAGCATTGATGACTGGCTCAAGAGTGCCTTC < 41bp 0.640843385626626 0.880454821724326 NA NA prediction 0.4792228721954 Functional Gain - FBXL22 ENSG00000197361 CDS Human protein_coding chr15:63889859 chr15:63889858 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_22550 0 0 0 0 1 FBXL22 chr15:63889944 5'GT 63889944 Upstream 87bp 20858 chr7 92887685 92887685 1 + G T HNSC 92887686 + 92887666 92887706 41 CAGCAAAGAACAGATGTACGGTTAAGTGAAATGCTGGAGGT CAGCAAAGAACAGATGTACTGTTAAGTGAAATGCTGGAGGT < 41bp 0.436309992856044 0.739604356847344 NA NA prediction 0.479208713694687 Functional Gain - VPS50 ENSG00000004766 CDS Human protein_coding chr7:92887686 chr7:92887685 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_22551 0 0 1 1 2 VPS50 chr7:92887669 3'AG 92887669 Downstream 17bp 20859 chr7 92887685 92887685 1 + G T HNSC 92887686 + 92887666 92887706 41 CAGCAAAGAACAGATGTACGGTTAAGTGAAATGCTGGAGGT CAGCAAAGAACAGATGTACTGTTAAGTGAAATGCTGGAGGT < 41bp 0.436309992856044 0.739604356847344 NA NA prediction 0.479208713694687 Functional Gain - VPS50 ENSG00000004766 CDS Human protein_coding chr7:92887686 chr7:92887685 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_22551 0 0 1 1 2 VPS50 chr7:92887704 5'GT 92887704 Upstream 20bp 20860 chr6 26463526 26463526 1 + G T LUSC 26463527 + 26463507 26463547 41 CATGAAGACGGGGGCATCCGGCTGGAGTGCATATCTAGAGG CATGAAGACGGGGGCATCCTGCTGGAGTGCATATCTAGAGG < 41bp 0.650034079722767 0.889636371645104 NA NA prediction 0.479204583844674 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26463527 chr6:26463526 nonsynonymous SNV 0.071 0 20 hm7G_associated_SNPs_22552 0 0 1 0 1 BTN2A1 chr6:26463472 3'AG 26463472 Downstream 55bp 20861 chr19 49967495 49967495 1 + G T LUAD 49967496 + 49967476 49967516 41 TGTGTGGAGCGAGAGGCTGGGGCAGGCGCTGGAGCTGGGCT TGTGTGGAGCGAGAGGCTGTGGCAGGCGCTGGAGCTGGGCT < 41bp 0.64720094408112 0.886793471611813 NA NA prediction 0.479185055061386 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967496 chr19:49967495 nonsynonymous SNV 0.967 3 20 hm7G_associated_SNPs_22553 0 0 1 0 1 ALDH16A1 chr19:49967520 5'GT 49967520 Upstream 26bp 20862 chr7 103006607 103006607 1 + G T CESC 103006608 + 103006588 103006628 41 TGATGAAATTGATGCTATTGGAGGTGAGAATGATACGTTAG TGATGAAATTGATGCTATTTGAGGTGAGAATGATACGTTAG < 41bp 0.624171865618349 0.8637547609756 NA NA prediction 0.479165790714503 Functional Gain - PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006608 chr7:103006607 stopgain 1.000 1 20 hm7G_associated_SNPs_22555 0 0 1 0 2 PSMC2 chr7:103006523 3'AG 103006523 Downstream 85bp 20863 chr7 103006607 103006607 1 + G T CESC 103006608 + 103006588 103006628 41 TGATGAAATTGATGCTATTGGAGGTGAGAATGATACGTTAG TGATGAAATTGATGCTATTTGAGGTGAGAATGATACGTTAG < 41bp 0.624171865618349 0.8637547609756 NA NA prediction 0.479165790714503 Functional Gain - PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103006608 chr7:103006607 stopgain 1.000 1 20 hm7G_associated_SNPs_22555 0 0 1 0 2 PSMC2 chr7:103006610 5'GT 103006610 Upstream 4bp 20864 chr5 7817047 7817047 1 + G T UCEC 7817048 + 7817028 7817068 41 TTGCCCTGGTAGGGAAGCTGGATGCCATCAACAAGCACTCC TTGCCCTGGTAGGGAAGCTTGATGCCATCAACAAGCACTCC < 41bp 0.410796358799304 0.739567645865238 NA NA prediction 0.479135291730477 Functional Gain - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7817048 chr5:7817047 synonymous SNV . 0 20 hm7G_associated_SNPs_22556 0 0 0 0 2 ADCY2 chr5:7816979 3'AG 7816979 Downstream 69bp 20865 chr5 7817047 7817047 1 + G T UCEC 7817048 + 7817028 7817068 41 TTGCCCTGGTAGGGAAGCTGGATGCCATCAACAAGCACTCC TTGCCCTGGTAGGGAAGCTTGATGCCATCAACAAGCACTCC < 41bp 0.410796358799304 0.739567645865238 NA NA prediction 0.479135291730477 Functional Gain - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7817048 chr5:7817047 synonymous SNV . 0 20 hm7G_associated_SNPs_22556 0 0 0 0 2 ADCY2 chr5:7817093 5'GT 7817093 Upstream 47bp 20866 chr11 12376331 12376331 1 + G T KIRC 12376332 + 12376312 12376352 41 TGAACATTTTCTCACCCAGGGCCCAGGAACTGGAATTAGAA TGAACATTTTCTCACCCAGTGCCCAGGAACTGGAATTAGAA < 41bp 0.634268570020633 0.873830541546606 NA NA prediction 0.479123943051946 Functional Gain - MICALCL ENSG00000133808 CDS Human protein_coding chr11:12376332 chr11:12376331 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_22557 0 0 0 0 1 MICALCL chr11:12376331 3'AG 12376331 Downstream 1bp 20867 chr1 15578286 15578286 1 + G T rs116423526 15578287 + 15578267 15578307 41 GGAAAACAGAGAGGATGAAGGCCTATCTAAAGAGCGCAGAA GGAAAACAGAGAGGATGAATGCCTATCTAAAGAGCGCAGAA < 41bp 0.414825882762905 0.73955044682237 NA NA prediction 0.47910089364474 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15578287 chr1:15578286 nonsynonymous SNV 0.966 2 20 hm7G_associated_SNPs_22559 0 0 0 0 2 FHAD1 chr1:15578267 3'AG 15578267 Downstream 20bp 20868 chr1 15578286 15578286 1 + G T rs116423526 15578287 + 15578267 15578307 41 GGAAAACAGAGAGGATGAAGGCCTATCTAAAGAGCGCAGAA GGAAAACAGAGAGGATGAATGCCTATCTAAAGAGCGCAGAA < 41bp 0.414825882762905 0.73955044682237 NA NA prediction 0.47910089364474 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15578287 chr1:15578286 nonsynonymous SNV 0.966 2 20 hm7G_associated_SNPs_22559 0 0 0 0 2 FHAD1 chr1:15578373 5'GT 15578373 Upstream 88bp 20869 chr5 177309519 177309519 1 + G T COAD 177309520 + 177309500 177309540 41 GATGAGTTAGTGTGTGTTCGGTGCTTTTCCAGGTAAGTGAC GATGAGTTAGTGTGTGTTCTGTGCTTTTCCAGGTAAGTGAC < 41bp 0.426031091154808 0.739540859786744 NA NA prediction 0.479081719573487 Functional Gain - LOC728554 ENSG00000170089 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:177309520 chr5:177309519 . . 0 20 hm7G_associated_SNPs_22561 0 0 0 0 1 LOC728554 chr5:177309531 5'GT 177309531 Upstream 13bp 20870 chr8 121215961 121215961 1 + G T TGCT 121215962 + 121215942 121215982 41 TGTAAGGGGTGAAAAACGCGGATGTGAATGAGCTGCAGGAG TGTAAGGGGTGAAAAACGCTGATGTGAATGAGCTGCAGGAG < 41bp 0.641811837016619 0.881342883423291 NA NA prediction 0.479062092813344 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121215962 chr8:121215961 synonymous SNV . 0 20 hm7G_associated_SNPs_22563 0 0 1 0 1 COL14A1 chr8:121215948 3'AG 121215948 Downstream 14bp 20871 chr2 27351316 27351316 1 + G T UCEC 27351317 + 27351297 27351337 41 GTGTGATTACAGAGGCCTCGGCTGGTGGCTGGGCCGCAGTT GTGTGATTACAGAGGCCTCTGCTGGTGGCTGGGCCGCAGTT < 41bp 0.64445881943055 0.883982790024377 NA NA prediction 0.479047941187654 Functional Gain - ABHD1 ENSG00000143994 CDS Human protein_coding chr2:27351317 chr2:27351316 nonsynonymous SNV 0.051 0 20 hm7G_associated_SNPs_22564 0 0 0 0 1 ABHD1 chr2:27351309 3'AG 27351309 Downstream 8bp 20872 chr1 161093933 161093933 1 - C A COAD 161093932 - 161093912 161093952 41 GTCACCCTCAAGAGGAGACGGGCTGGTGAGGAAGTATTAGG GTCACCCTCAAGAGGAGACTGGCTGGTGAGGAAGTATTAGG < 41bp 0.649282955520775 0.888805125519337 NA NA prediction 0.479044339997123 Functional Gain - DEDD;NIT1 ENSG00000158793;ENSG00000158796 CDS Human protein_coding chr1:161093932 chr1:161093933 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_22565 0 0 0 0 2 DEDD chr1:161093928 5'GT 161093928 Upstream 6bp 20873 chr1 161093933 161093933 1 - C A COAD 161093932 - 161093912 161093952 41 GTCACCCTCAAGAGGAGACGGGCTGGTGAGGAAGTATTAGG GTCACCCTCAAGAGGAGACTGGCTGGTGAGGAAGTATTAGG < 41bp 0.649282955520775 0.888805125519337 NA NA prediction 0.479044339997123 Functional Gain - DEDD;NIT1 ENSG00000158793;ENSG00000158796 CDS Human protein_coding chr1:161093932 chr1:161093933 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_22565 0 0 0 0 2 DEDD chr1:161094000 3'AG 161094000 Downstream 68bp 20874 chr16 89924885 89924885 1 + G T LUAD 89924886 + 89924866 89924906 41 TGCTCAAGGCGCCTACCTTGGCTGAAATGGAAGAGATGAAT TGCTCAAGGCGCCTACCTTTGCTGAAATGGAAGAGATGAAT < 41bp 0.657084427310925 0.896596924284359 NA NA prediction 0.479024993946868 Functional Gain - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89924886 chr16:89924885 nonsynonymous SNV 0.575 3 20 hm7G_associated_SNPs_22566 0 0 1 0 1 SPIRE2 chr16:89924915 5'GT 89924915 Upstream 31bp 20875 chr15 25221490 25221490 1 + G T LUAD 25221491 + 25221471 25221511 41 CCAGAGCGTGAAGAAAAGCGGGTTTTGGGTCTGGTGTTGCT CCAGAGCGTGAAGAAAAGCTGGTTTTGGGTCTGGTGTTGCT < 41bp 0.644689766270089 0.884174648822319 NA NA prediction 0.478969765104461 Functional Gain - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25221491 chr15:25221490 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_22568 0 0 1 0 2 SNRPN chr15:25221452 3'AG 25221452 Downstream 39bp 20876 chr15 25221490 25221490 1 + G T LUAD 25221491 + 25221471 25221511 41 CCAGAGCGTGAAGAAAAGCGGGTTTTGGGTCTGGTGTTGCT CCAGAGCGTGAAGAAAAGCTGGTTTTGGGTCTGGTGTTGCT < 41bp 0.644689766270089 0.884174648822319 NA NA prediction 0.478969765104461 Functional Gain - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25221491 chr15:25221490 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_22568 0 0 1 0 2 SNRPN chr15:25221563 5'GT 25221563 Upstream 74bp 20877 chr2 7018270 7018270 1 + G T UCEC 7018271 + 7018251 7018291 41 GAGGATTGCTTTTGCTTAAGGAAGCTGGTGAGTACATGGTC GAGGATTGCTTTTGCTTAATGAAGCTGGTGAGTACATGGTC < 41bp 0.622776290674976 0.862259377847373 NA NA prediction 0.478966174344794 Functional Gain - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7018271 chr2:7018270 nonsynonymous SNV 0.106 2 20 hm7G_associated_SNPs_22569 0 0 0 0 1 RSAD2 chr2:7018277 5'GT 7018277 Upstream 8bp 20878 chr19 13247186 13247186 1 + G T HNSC 13247187 + 13247167 13247207 41 CCCCAAGCTCTACGACGAGGGCGACCCCTCTGAGAAGCTGG CCCCAAGCTCTACGACGAGTGCGACCCCTCTGAGAAGCTGG < 41bp 0.388901022344895 0.739476434682123 NA NA prediction 0.478952869364246 Functional Gain - NACC1 ENSG00000160877 CDS Human protein_coding chr19:13247187 chr19:13247186 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_22570 0 0 0 0 1 NACC1 chr19:13247219 5'GT 13247219 Upstream 34bp 20879 chr12 100787220 100787220 1 + G T LUSC 100787221 + 100787201 100787241 41 TGCAGCCAGAGTGCATTACGGATGCGTCATGTGTGTCAGAA TGCAGCCAGAGTGCATTACTGATGCGTCATGTGTGTCAGAA < 41bp 0.637960462249913 0.8774285063514 NA NA prediction 0.478936088202973 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100787221 chr12:100787220 stopgain 0.983 1 20 hm7G_associated_SNPs_22571 0 0 0 0 1 SLC17A8 chr12:100787261 5'GT 100787261 Upstream 42bp 20880 chr1 154962134 154962134 1 + G T GBM 154962135 + 154962115 154962155 41 CTGTGTGGGCTTCAACGGGGGCAAAGACTGCACTGCCCTCC CTGTGTGGGCTTCAACGGGTGCAAAGACTGCACTGCCCTCC < 41bp 0.648862858421239 0.888318306805087 NA NA prediction 0.478910896767698 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962135 chr1:154962134 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22573 0 0 1 0 1 FLAD1 chr1:154962183 5'GT 154962183 Upstream 50bp 20881 chr18 43685275 43685275 1 + G T COAD 43685276 + 43685256 43685296 41 CGCAACAGGGTCCGGGACAGGGATGTCTACCTGGTAATAGA CGCAACAGGGTCCGGGACATGGATGTCTACCTGGTAATAGA < 41bp 0.580648502544649 0.82010094833329 NA NA prediction 0.478904891577281 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43685276 chr18:43685275 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_22574 0 0 0 0 2 HAUS1 chr18:43685334 5'GT 43685334 Upstream 60bp 20882 chr18 43685275 43685275 1 + G T COAD 43685276 + 43685256 43685296 41 CGCAACAGGGTCCGGGACAGGGATGTCTACCTGGTAATAGA CGCAACAGGGTCCGGGACATGGATGTCTACCTGGTAATAGA < 41bp 0.580648502544649 0.82010094833329 NA NA prediction 0.478904891577281 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43685276 chr18:43685275 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_22574 0 0 0 0 2 HAUS1 chr18:43685374 5'GT 43685374 Upstream 100bp 20883 chr20 10025083 10025083 1 + G T LUAD 10025084 + 10025064 10025104 41 TGGAAGCGTCAAGAGAAGGGGTAGTGGAAATAGTTCGAGGC TGGAAGCGTCAAGAGAAGGTGTAGTGGAAATAGTTCGAGGC < 41bp 0.639090508705048 0.878540592452738 NA NA prediction 0.478900167495379 Functional Gain - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10025084 chr20:10025083 synonymous SNV . 0 20 hm7G_associated_SNPs_22575 0 0 1 0 1 ANKEF1 chr20:10025042 3'AG 10025042 Downstream 42bp 20884 chr1 210796967 210796967 1 + G T LUAD 210796968 + 210796948 210796988 41 TCCAACCTGGTATTTCTTGGGGGCAATGAGGTTGGGAAAAC TCCAACCTGGTATTTCTTGTGGGCAATGAGGTTGGGAAAAC < 41bp 0.416323863793106 0.739444736177346 NA NA prediction 0.478889472354692 Functional Gain - HHAT ENSG00000054392 CDS Human protein_coding chr1:210796968 chr1:210796967 nonsynonymous SNV 0.514 3 20 hm7G_associated_SNPs_22576 0 0 0 0 2 HHAT chr1:210796870 3'AG 210796870 Downstream 98bp 20885 chr1 210796967 210796967 1 + G T LUAD 210796968 + 210796948 210796988 41 TCCAACCTGGTATTTCTTGGGGGCAATGAGGTTGGGAAAAC TCCAACCTGGTATTTCTTGTGGGCAATGAGGTTGGGAAAAC < 41bp 0.416323863793106 0.739444736177346 NA NA prediction 0.478889472354692 Functional Gain - HHAT ENSG00000054392 CDS Human protein_coding chr1:210796968 chr1:210796967 nonsynonymous SNV 0.514 3 20 hm7G_associated_SNPs_22576 0 0 0 0 2 HHAT chr1:210797014 5'GT 210797014 Upstream 48bp 20886 chr12 49723975 49723975 1 + G T LUSC 49723976 + 49723956 49723996 41 GACAGGAAGTAGAGGGGCTGGTAGGGGGCCAGTGTGTCCCT GACAGGAAGTAGAGGGGCTTGTAGGGGGCCAGTGTGTCCCT < 41bp 0.403327384467962 0.739417650678089 NA NA prediction 0.478835301356177 Functional Gain - TROAP ENSG00000135451 CDS Human protein_coding chr12:49723976 chr12:49723975 synonymous SNV . 0 20 hm7G_associated_SNPs_22577 0 0 1 0 1 TROAP chr12:49723928 3'AG 49723928 Downstream 48bp 20887 chr5 52385836 52385836 1 + G T UCEC 52385837 + 52385817 52385857 41 ACCAACAGGAGTTATAATAGGAAGTATAATTGCTGGAATCC ACCAACAGGAGTTATAATATGAAGTATAATTGCTGGAATCC < 41bp 0.421281388570775 0.739409284698186 NA NA prediction 0.478818569396372 Functional Gain - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52385837 chr5:52385836 stopgain 0.968 1 20 hm7G_associated_SNPs_22578 0 0 0 0 2 ITGA2 chr5:52385776 3'AG 52385776 Downstream 61bp 20888 chr5 52385836 52385836 1 + G T UCEC 52385837 + 52385817 52385857 41 ACCAACAGGAGTTATAATAGGAAGTATAATTGCTGGAATCC ACCAACAGGAGTTATAATATGAAGTATAATTGCTGGAATCC < 41bp 0.421281388570775 0.739409284698186 NA NA prediction 0.478818569396372 Functional Gain - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52385837 chr5:52385836 stopgain 0.968 1 20 hm7G_associated_SNPs_22578 0 0 0 0 2 ITGA2 chr5:52385892 5'GT 52385892 Upstream 57bp 20889 chr10 93221892 93221892 1 + G T UCS 93221893 + 93221873 93221913 41 AACACCATTGAAGACTCTGGGATTAATGCTAAATTTGTGAA AACACCATTGAAGACTCTGTGATTAATGCTAAATTTGTGAA < 41bp 0.42290815297741 0.739392053390382 NA NA prediction 0.478784106780763 Functional Gain - HECTD2 ENSG00000165338 CDS Human protein_coding chr10:93221893 chr10:93221892 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22580 0 0 1 0 1 HECTD2 chr10:93221941 5'GT 93221941 Upstream 50bp 20890 chr19 44589908 44589908 1 + G T CESC 44589909 + 44589889 44589929 41 GGAGTCTGTTCCAGAAACAGGACCACATGAAGAGTGGTCTT GGAGTCTGTTCCAGAAACATGACCACATGAAGAGTGGTCTT < 41bp 0.447380514432949 0.739386709346167 NA NA prediction 0.478773418692335 Functional Gain - ZNF284 ENSG00000186026 CDS Human protein_coding chr19:44589909 chr19:44589908 stopgain 0.038 0 20 hm7G_associated_SNPs_22581 0 0 1 0 1 ZNF284 chr19:44589867 3'AG 44589867 Downstream 42bp 20891 chr10 96291056 96291056 1 + G T LUAD 96291057 + 96291037 96291077 41 AGAATTTTTATTTAGGACTGGATTAGGAATCCTCCGATTAT AGAATTTTTATTTAGGACTTGATTAGGAATCCTCCGATTAT < 41bp 0.623399821522101 0.862773180339621 NA NA prediction 0.478746717635041 Functional Gain - TBC1D12 ENSG00000108239 CDS Human protein_coding chr10:96291057 chr10:96291056 stopgain 1.000 1 20 hm7G_associated_SNPs_22582 0 0 0 0 1 TBC1D12 chr10:96290959 3'AG 96290959 Downstream 98bp 20892 chr15 85488009 85488009 1 + G T LUAD 85488010 + 85487990 85488030 41 TCCTCTACATGCCCAGGGGGGCTGAAGTTGACTGCATGTCC TCCTCTACATGCCCAGGGGTGCTGAAGTTGACTGCATGTCC < 41bp 0.406615598793525 0.739337682493928 NA NA prediction 0.478675364987856 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85488010 chr15:85488009 synonymous SNV . 0 20 hm7G_associated_SNPs_22583 0 0 0 0 2 SLC28A1 chr15:85487987 3'AG 85487987 Downstream 23bp 20893 chr15 85488009 85488009 1 + G T LUAD 85488010 + 85487990 85488030 41 TCCTCTACATGCCCAGGGGGGCTGAAGTTGACTGCATGTCC TCCTCTACATGCCCAGGGGTGCTGAAGTTGACTGCATGTCC < 41bp 0.406615598793525 0.739337682493928 NA NA prediction 0.478675364987856 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85488010 chr15:85488009 synonymous SNV . 0 20 hm7G_associated_SNPs_22583 0 0 0 0 2 SLC28A1 chr15:85488098 5'GT 85488098 Upstream 90bp 20894 chr21 35183306 35183306 1 + G T LUAD 35183307 + 35183287 35183327 41 AAGCCAAACTGGAGAACCCGGCTGGCTTGGAGGAGAATTAA AAGCCAAACTGGAGAACCCTGCTGGCTTGGAGGAGAATTAA < 41bp 0.603692515715908 0.843019487835141 NA NA prediction 0.478653944238467 Functional Gain - ITSN1 ENSG00000205726 CDS Human protein_coding chr21:35183307 chr21:35183306 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_22585 0 0 1 0 1 ITSN1 chr21:35183279 3'AG 35183279 Downstream 28bp 20895 chr16 89251666 89251666 1 + G T LUSC 89251667 + 89251647 89251687 41 GGTTCTCCATCCTGCAGCAGGGCAGCCCCGAGCTCTTCAGC GGTTCTCCATCCTGCAGCATGGCAGCCCCGAGCTCTTCAGC < 41bp 0.37885768963215 0.739308533909597 NA NA prediction 0.478617067819193 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89251667 chr16:89251666 nonsynonymous SNV 0.129 4 20 hm7G_associated_SNPs_22587 0 0 0 0 2 CDH15 chr16:89251581 3'AG 89251581 Downstream 86bp 20896 chr16 89251666 89251666 1 + G T LUSC 89251667 + 89251647 89251687 41 GGTTCTCCATCCTGCAGCAGGGCAGCCCCGAGCTCTTCAGC GGTTCTCCATCCTGCAGCATGGCAGCCCCGAGCTCTTCAGC < 41bp 0.37885768963215 0.739308533909597 NA NA prediction 0.478617067819193 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89251667 chr16:89251666 nonsynonymous SNV 0.129 4 20 hm7G_associated_SNPs_22587 0 0 0 0 2 CDH15 chr16:89251741 5'GT 89251741 Upstream 76bp 20897 chr10 23290983 23290983 1 + G T LUAD 23290984 + 23290964 23291004 41 CAATGAATTATGCAGGCTCGGGTGAGTGGATGCCATCTCAA CAATGAATTATGCAGGCTCTGGTGAGTGGATGCCATCTCAA < 41bp 0.634597470572009 0.87389923259578 NA NA prediction 0.478603524047543 Functional Gain - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23290984 chr10:23290983 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_22588 0 0 0 0 1 ARMC3 chr10:23290984 5'GT 23290984 Upstream 2bp 20898 chr2 139316682 139316682 1 + G T HNSC 139316683 + 139316663 139316703 41 TCGTCTAGCAGAAGATTTAGGTAATCTCTGGGAAAACACAA TCGTCTAGCAGAAGATTTATGTAATCTCTGGGAAAACACAA < 41bp 0.631431986302122 0.870728478817936 NA NA prediction 0.478592985031628 Functional Gain - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139316683 chr2:139316682 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22589 0 0 1 0 2 SPOPL chr2:139316592 3'AG 139316592 Downstream 91bp 20899 chr2 139316682 139316682 1 + G T HNSC 139316683 + 139316663 139316703 41 TCGTCTAGCAGAAGATTTAGGTAATCTCTGGGAAAACACAA TCGTCTAGCAGAAGATTTATGTAATCTCTGGGAAAACACAA < 41bp 0.631431986302122 0.870728478817936 NA NA prediction 0.478592985031628 Functional Gain - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139316683 chr2:139316682 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22589 0 0 1 0 2 SPOPL chr2:139316769 5'GT 139316769 Upstream 88bp 20900 chr13 25281228 25281228 1 + G T UCEC 25281229 + 25281209 25281249 41 CTAAAGAAGGCAGACATTGGGATTGCCATGGGGATAGCAGG CTAAAGAAGGCAGACATTGTGATTGCCATGGGGATAGCAGG < 41bp 0.645827075601527 0.885114088551321 NA NA prediction 0.478574025899589 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25281229 chr13:25281228 nonsynonymous SNV 0.937 5 20 hm7G_associated_SNPs_22591 0 0 0 0 1 ATP12A chr13:25281161 3'AG 25281161 Downstream 68bp 20901 chr16 81060132 81060132 1 + G T SARC 81060133 + 81060113 81060153 41 GAAATCTTCCACCCATAGTGGATTCAAGGATCATTCATGAA GAAATCTTCCACCCATAGTTGATTCAAGGATCATTCATGAA < 41bp 0.634124284767049 0.873401391895732 NA NA prediction 0.478554214257365 Functional Gain - CENPN ENSG00000166451 CDS Human protein_coding chr16:81060133 chr16:81060132 nonsynonymous SNV 0.946 0 20 hm7G_associated_SNPs_22592 0 0 1 0 1 CENPN chr16:81060131 3'AG 81060131 Downstream 2bp 20902 chr6 161137769 161137769 1 + G T COAD 161137770 + 161137750 161137790 41 ACCGACCCCAACAAGCGCTGGGAACTTTGTGACATCCCCCG ACCGACCCCAACAAGCGCTTGGAACTTTGTGACATCCCCCG < 41bp 0.392790635145325 0.739276513709475 NA NA prediction 0.478553027418951 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161137770 chr6:161137769 nonsynonymous SNV 0.975 3 20 hm7G_associated_SNPs_22593 0 0 0 0 2 PLG chr6:161137677 3'AG 161137677 Downstream 93bp 20903 chr6 161137769 161137769 1 + G T COAD 161137770 + 161137750 161137790 41 ACCGACCCCAACAAGCGCTGGGAACTTTGTGACATCCCCCG ACCGACCCCAACAAGCGCTTGGAACTTTGTGACATCCCCCG < 41bp 0.392790635145325 0.739276513709475 NA NA prediction 0.478553027418951 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161137770 chr6:161137769 nonsynonymous SNV 0.975 3 20 hm7G_associated_SNPs_22593 0 0 0 0 2 PLG chr6:161137795 5'GT 161137795 Upstream 27bp 20904 chr2 29001725 29001725 1 + G T UCEC 29001726 + 29001706 29001746 41 GAGATTATTTGAATATGGAGGTTTCCCACCAGAAGCCAACT GAGATTATTTGAATATGGATGTTTCCCACCAGAAGCCAACT < 41bp 0.622199464932532 0.861475646919982 NA NA prediction 0.478552363974899 Functional Gain - PPP1CB ENSG00000213639 CDS Human protein_coding chr2:29001726 chr2:29001725 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22594 0 0 1 0 1 PPP1CB chr2:29001675 3'AG 29001675 Downstream 51bp 20905 chr7 50175711 50175711 1 + G T UCEC 50175712 + 50175692 50175732 41 AGATGGTTGGTGAGCTCTGGGACAGATTTCAAACAAGATCT AGATGGTTGGTGAGCTCTGTGACAGATTTCAAACAAGATCT < 41bp 0.422300538967835 0.73926772168454 NA NA prediction 0.478535443369081 Functional Gain - C7orf72 ENSG00000164500 CDS Human protein_coding chr7:50175712 chr7:50175711 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22595 0 0 0 0 2 C7orf72 chr7:50175694 3'AG 50175694 Downstream 18bp 20906 chr7 50175711 50175711 1 + G T UCEC 50175712 + 50175692 50175732 41 AGATGGTTGGTGAGCTCTGGGACAGATTTCAAACAAGATCT AGATGGTTGGTGAGCTCTGTGACAGATTTCAAACAAGATCT < 41bp 0.422300538967835 0.73926772168454 NA NA prediction 0.478535443369081 Functional Gain - C7orf72 ENSG00000164500 CDS Human protein_coding chr7:50175712 chr7:50175711 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22595 0 0 0 0 2 C7orf72 chr7:50175761 5'GT 50175761 Upstream 51bp 20907 chr11 73105774 73105774 1 + G T UCEC 73105775 + 73105755 73105795 41 AGATCACCATCTTGTCTGTGGGCAGGTGAGATGGGCACAGA AGATCACCATCTTGTCTGTTGGCAGGTGAGATGGGCACAGA < 41bp 0.653469127768761 0.892734845752433 NA NA prediction 0.478531435967343 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73105775 chr11:73105774 synonymous SNV . 0 20 hm7G_associated_SNPs_22596 0 0 0 0 1 RELT chr11:73105779 5'GT 73105779 Upstream 6bp 20908 chr15 29367149 29367149 1 + G T UCEC 29367150 + 29367130 29367170 41 AATGGTCTGGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCT AATGGTCTGGAGCAGCCAATGAAGCAGCAGCGCTCTGATCT < 41bp 0.39934796118461 0.739256732280872 NA NA prediction 0.478513464561745 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29367150 chr15:29367149 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22598 0 0 0 0 2 APBA2 chr15:29367124 3'AG 29367124 Downstream 26bp 20909 chr15 29367149 29367149 1 + G T UCEC 29367150 + 29367130 29367170 41 AATGGTCTGGAGCAGCCAAGGAAGCAGCAGCGCTCTGATCT AATGGTCTGGAGCAGCCAATGAAGCAGCAGCGCTCTGATCT < 41bp 0.39934796118461 0.739256732280872 NA NA prediction 0.478513464561745 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29367150 chr15:29367149 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22598 0 0 0 0 2 APBA2 chr15:29367204 5'GT 29367204 Upstream 56bp 20910 chr12 122669301 122669301 1 + G T LIHC 122669302 + 122669282 122669322 41 TTCTTCTACTCCTACTTCCGGTCCCTGCGGGTAATAGACAA TTCTTCTACTCCTACTTCCTGTCCCTGCGGGTAATAGACAA < 41bp 0.403109871770316 0.73923892240777 NA NA prediction 0.478477844815541 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122669302 chr12:122669301 nonsynonymous SNV 0.970 2 20 hm7G_associated_SNPs_22600 0 0 0 0 1 LRRC43 chr12:122669326 5'GT 122669326 Upstream 26bp 20911 chr12 50499454 50499454 1 + G T COAD 50499455 + 50499435 50499475 41 TCTGAAGGCAAACGCCACTGGCATATCTCTTATTAAGGTGC TCTGAAGGCAAACGCCACTTGCATATCTCTTATTAAGGTGC < 41bp 0.388444446206165 0.739238247374693 NA NA prediction 0.478476494749386 Functional Gain - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50499455 chr12:50499454 nonsynonymous SNV 0.913 4 20 hm7G_associated_SNPs_22601 0 0 1 0 2 GPD1 chr12:50499400 3'AG 50499400 Downstream 55bp 20912 chr12 50499454 50499454 1 + G T COAD 50499455 + 50499435 50499475 41 TCTGAAGGCAAACGCCACTGGCATATCTCTTATTAAGGTGC TCTGAAGGCAAACGCCACTTGCATATCTCTTATTAAGGTGC < 41bp 0.388444446206165 0.739238247374693 NA NA prediction 0.478476494749386 Functional Gain - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50499455 chr12:50499454 nonsynonymous SNV 0.913 4 20 hm7G_associated_SNPs_22601 0 0 1 0 2 GPD1 chr12:50499471 5'GT 50499471 Upstream 18bp 20913 chr18 66564499 66564499 1 + G T HNSC 66564500 + 66564480 66564520 41 ACCTCGGAGTGGGACAAGAGGGAAATACTTGAAAGAGAAAA ACCTCGGAGTGGGACAAGATGGAAATACTTGAAAGAGAAAA < 41bp 0.632836472528697 0.872065804928072 NA NA prediction 0.478458664798751 Functional Gain - CCDC102B ENSG00000150636 CDS Human protein_coding chr18:66564500 chr18:66564499 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_22603 0 0 0 0 1 CCDC102B chr18:66564456 3'AG 66564456 Downstream 44bp 20914 chr4 115585164 115585164 1 + G T LUSC 115585165 + 115585145 115585185 41 TTACAGGATCTCCAAAGATGGGTAAATGGTGCTAATGAACA TTACAGGATCTCCAAAGATTGGTAAATGGTGCTAATGAACA < 41bp 0.631852512825202 0.871069517947233 NA NA prediction 0.478434010244062 Functional Gain - UGT8 ENSG00000174607 CDS Human protein_coding chr4:115585165 chr4:115585164 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22604 0 0 1 5 1 UGT8 chr4:115585151 3'AG 115585151 Downstream 14bp 20915 chr14 74325583 74325583 1 + G T OV 74325584 + 74325564 74325604 41 CAATGATTGTTCAAAGAGTGGTATTGAATTCTCGACCTGGT CAATGATTGTTCAAAGAGTTGTATTGAATTCTCGACCTGGT < 41bp 0.428980136515891 0.739202570003109 NA NA prediction 0.478405140006218 Functional Gain - PTGR2 ENSG00000140043;ENSG00000258653 CDS Human other chr14:74325584 chr14:74325583 synonymous SNV . 0 20 hm7G_associated_SNPs_22606 0 0 1 0 2 PTGR2 chr14:74325519 3'AG 74325519 Downstream 65bp 20916 chr14 74325583 74325583 1 + G T OV 74325584 + 74325564 74325604 41 CAATGATTGTTCAAAGAGTGGTATTGAATTCTCGACCTGGT CAATGATTGTTCAAAGAGTTGTATTGAATTCTCGACCTGGT < 41bp 0.428980136515891 0.739202570003109 NA NA prediction 0.478405140006218 Functional Gain - PTGR2 ENSG00000140043;ENSG00000258653 CDS Human other chr14:74325584 chr14:74325583 synonymous SNV . 0 20 hm7G_associated_SNPs_22606 0 0 1 0 2 PTGR2 chr14:74325602 5'GT 74325602 Upstream 20bp 20917 chr12 10168296 10168296 1 + G T LUAD 10168297 + 10168277 10168317 41 TCTGGCAGAAGTTGGTTCTGGGAAGATGGCTCTGTTCCCTC TCTGGCAGAAGTTGGTTCTTGGAAGATGGCTCTGTTCCCTC < 41bp 0.621441216492063 0.860610208736896 NA NA prediction 0.478337984489666 Functional Gain - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10168297 chr12:10168296 nonsynonymous SNV 0.949 2 20 hm7G_associated_SNPs_22608 0 0 0 0 2 CLEC12B chr12:10168211 3'AG 10168211 Downstream 86bp 20918 chr12 10168296 10168296 1 + G T LUAD 10168297 + 10168277 10168317 41 TCTGGCAGAAGTTGGTTCTGGGAAGATGGCTCTGTTCCCTC TCTGGCAGAAGTTGGTTCTTGGAAGATGGCTCTGTTCCCTC < 41bp 0.621441216492063 0.860610208736896 NA NA prediction 0.478337984489666 Functional Gain - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10168297 chr12:10168296 nonsynonymous SNV 0.949 2 20 hm7G_associated_SNPs_22608 0 0 0 0 2 CLEC12B chr12:10168326 5'GT 10168326 Upstream 31bp 20919 chr8 145617999 145617999 1 + G T SKCM 145618000 + 145617980 145618020 41 GGTGTGTGCAGGGCTGTCCGGGGCTGGAGCCGCCTGGCGGG GGTGTGTGCAGGGCTGTCCTGGGCTGGAGCCGCCTGGCGGG < 41bp 0.639403921576682 0.878567293929435 NA NA prediction 0.478326744705506 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145618000 chr8:145617999 nonsynonymous SNV 0.284 1 20 hm7G_associated_SNPs_22609 0 0 1 0 1 ADCK5 chr8:145617991 3'AG 145617991 Downstream 9bp 20920 chr11 65108998 65108998 1 + G T STAD 65108999 + 65108979 65109019 41 AGTTGATGATGACAGCCTGGGCGAGTTTCCTGTGACCAACA AGTTGATGATGACAGCCTGTGCGAGTTTCCTGTGACCAACA < 41bp 0.38598731548573 0.739162863668525 NA NA prediction 0.47832572733705 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65108999 chr11:65108998 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22610 0 0 1 0 1 DPF2 chr11:65109033 5'GT 65109033 Upstream 36bp 20921 chr2 220112227 220112227 1 + G T LUAD 220112228 + 220112208 220112248 41 ATCAAGCATGCATCCATGTGGAGGGCTCCCGCCAGGCTCTG ATCAAGCATGCATCCATGTTGAGGGCTCCCGCCAGGCTCTG < 41bp 0.392797518237785 0.739125809053067 NA NA prediction 0.478251618106133 Functional Gain - STK16 ENSG00000115661 CDS Human protein_coding chr2:220112228 chr2:220112227 synonymous SNV . 0 20 hm7G_associated_SNPs_22611 0 0 1 0 2 STK16 chr2:220112137 3'AG 220112137 Downstream 91bp 20922 chr2 220112227 220112227 1 + G T LUAD 220112228 + 220112208 220112248 41 ATCAAGCATGCATCCATGTGGAGGGCTCCCGCCAGGCTCTG ATCAAGCATGCATCCATGTTGAGGGCTCCCGCCAGGCTCTG < 41bp 0.392797518237785 0.739125809053067 NA NA prediction 0.478251618106133 Functional Gain - STK16 ENSG00000115661 CDS Human protein_coding chr2:220112228 chr2:220112227 synonymous SNV . 0 20 hm7G_associated_SNPs_22611 0 0 1 0 2 STK16 chr2:220112257 5'GT 220112257 Upstream 31bp 20923 chr9 101810069 101810069 1 + G T UCEC 101810070 + 101810050 101810090 41 CATTTGTTTTGCCTCTAGGGGCCCAAAGGACCACCAGGACA CATTTGTTTTGCCTCTAGGTGCCCAAAGGACCACCAGGACA < 41bp 0.411945655637836 0.73912415099066 NA NA prediction 0.47824830198132 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101810070 chr9:101810069 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_22613 0 0 0 0 2 COL15A1 chr9:101810068 3'AG 101810068 Downstream 2bp 20924 chr9 101810069 101810069 1 + G T UCEC 101810070 + 101810050 101810090 41 CATTTGTTTTGCCTCTAGGGGCCCAAAGGACCACCAGGACA CATTTGTTTTGCCTCTAGGTGCCCAAAGGACCACCAGGACA < 41bp 0.411945655637836 0.73912415099066 NA NA prediction 0.47824830198132 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101810070 chr9:101810069 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_22613 0 0 0 0 2 COL15A1 chr9:101810121 5'GT 101810121 Upstream 53bp 20925 chrX 153697479 153697479 1 + G T UCEC 153697480 + 153697460 153697500 41 ACTGTGACAGCATCACCCAGGCCAAAGATAAGCTGCTGGAC ACTGTGACAGCATCACCCATGCCAAAGATAAGCTGCTGGAC < 41bp 0.654363936946383 0.893475772478227 NA NA prediction 0.478223671063688 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153697480 chrX:153697479 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22615 0 0 1 0 2 PLXNA3 chrX:153697399 3'AG 153697399 Downstream 81bp 20926 chrX 153697479 153697479 1 + G T UCEC 153697480 + 153697460 153697500 41 ACTGTGACAGCATCACCCAGGCCAAAGATAAGCTGCTGGAC ACTGTGACAGCATCACCCATGCCAAAGATAAGCTGCTGGAC < 41bp 0.654363936946383 0.893475772478227 NA NA prediction 0.478223671063688 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153697480 chrX:153697479 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22615 0 0 1 0 2 PLXNA3 chrX:153697558 5'GT 153697558 Upstream 80bp 20927 chr22 50563892 50563892 1 + G T CESC 50563893 + 50563873 50563913 41 AGGAGATTTATGCAGAAATGGAACTGAAAGAGTATAACATG AGGAGATTTATGCAGAAATTGAACTGAAAGAGTATAACATG < 41bp 0.399204714580436 0.739107217654439 NA NA prediction 0.478214435308879 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50563893 chr22:50563892 nonsynonymous SNV 0.929 0 20 hm7G_associated_SNPs_22616 0 0 0 0 1 MOV10L1 chr22:50563821 3'AG 50563821 Downstream 72bp 20928 chr15 23812105 23812105 1 + G T PRAD 23812106 + 23812086 23812126 41 AACTTATTCAGCAATACAAGGAGGCAATGAGCAACAAGGCC AACTTATTCAGCAATACAATGAGGCAATGAGCAACAAGGCC < 41bp 0.628707478907279 0.867802053209231 NA NA prediction 0.478189148603904 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23812106 chr15:23812105 nonsynonymous SNV 0.717 3 20 hm7G_associated_SNPs_22617 0 0 1 0 1 MKRN3 chr15:23812131 5'GT 23812131 Upstream 27bp 20929 chr3 50316589 50316589 1 + G T UCEC 50316590 + 50316570 50316610 41 CACTGCTTGCCATGCCTGAGGAGACCCAAGAAGGTAGGAGA CACTGCTTGCCATGCCTGATGAGACCCAAGAAGGTAGGAGA < 41bp 0.636126497690313 0.875209618301378 NA NA prediction 0.47816624122213 Functional Gain - LSMEM2 ENSG00000179564 CDS Human protein_coding chr3:50316590 chr3:50316589 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_22618 0 0 0 0 1 LSMEM2 chr3:50316602 5'GT 50316602 Upstream 14bp 20930 chr6 2900738 2900738 1 + G T UCEC 2900739 + 2900719 2900759 41 GAACCATGGCCAGGGCAGAGGAGATGCTCACAGGAGAACAG GAACCATGGCCAGGGCAGATGAGATGCTCACAGGAGAACAG < 41bp 0.41985269057386 0.73908062099373 NA NA prediction 0.478161241987459 Functional Gain - SERPINB9 ENSG00000170542 CDS Human protein_coding chr6:2900739 chr6:2900738 synonymous SNV . 0 20 hm7G_associated_SNPs_22620 0 0 0 0 1 SERPINB9 chr6:2900717 3'AG 2900717 Downstream 22bp 20931 chr18 61602080 61602080 1 + G T UCEC 61602081 + 61602061 61602101 41 CAAATGGGCAGCTGGAAAAGGCCATCACCTATGAGAAGCTG CAAATGGGCAGCTGGAAAATGCCATCACCTATGAGAAGCTG < 41bp 0.630498530011651 0.869578013488794 NA NA prediction 0.478158966954287 Functional Gain - SERPINB10 ENSG00000242550;ENSG00000268706 CDS Human other chr18:61602081 chr18:61602080 nonsynonymous SNV 0.957 2 20 hm7G_associated_SNPs_22621 0 0 0 0 1 SERPINB10 chr18:61602072 3'AG 61602072 Downstream 9bp 20932 chr15 91491976 91491976 1 + G T UCEC 91491977 + 91491957 91491997 41 AGCCCGACCCCAAGATGGTGGAGCTGGCCAAGTATGCCAAG AGCCCGACCCCAAGATGGTTGAGCTGGCCAAGTATGCCAAG < 41bp 0.387362630729437 0.739074609296907 NA NA prediction 0.478149218593815 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91491977 chr15:91491976 synonymous SNV . 0 20 hm7G_associated_SNPs_22622 0 0 1 0 2 UNC45A chr15:91491884 3'AG 91491884 Downstream 93bp 20933 chr15 91491976 91491976 1 + G T UCEC 91491977 + 91491957 91491997 41 AGCCCGACCCCAAGATGGTGGAGCTGGCCAAGTATGCCAAG AGCCCGACCCCAAGATGGTTGAGCTGGCCAAGTATGCCAAG < 41bp 0.387362630729437 0.739074609296907 NA NA prediction 0.478149218593815 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91491977 chr15:91491976 synonymous SNV . 0 20 hm7G_associated_SNPs_22622 0 0 1 0 2 UNC45A chr15:91492024 5'GT 91492024 Upstream 49bp 20934 chrX 114540826 114540826 1 + G T LUAD 114540827 + 114540807 114540847 41 AGAATCAAGGCCAGTCAGAGGGGAACCAGCATCAATCAGAA AGAATCAAGGCCAGTCAGATGGGAACCAGCATCAATCAGAA < 41bp 0.424876655133536 0.739071617518749 NA NA prediction 0.478143235037499 Functional Gain - LUZP4 ENSG00000102021 CDS Human protein_coding chrX:114540827 chrX:114540826 nonsynonymous SNV 0.386 2 20 hm7G_associated_SNPs_22624 0 0 0 0 1 LUZP4 chrX:114540770 3'AG 114540770 Downstream 57bp 20935 chrX 123499618 123499618 1 + G T UCEC 123499619 + 123499599 123499639 41 ATTCTTTCACAGGTATCACGGTTACATTTATACATACCGAG ATTCTTTCACAGGTATCACTGTTACATTTATACATACCGAG < 41bp 0.421926479422285 0.739056410893509 NA NA prediction 0.478112821787017 Functional Gain - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123499619 chrX:123499618 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_22625 0 0 0 0 2 SH2D1A chrX:123499611 3'AG 123499611 Downstream 8bp 20936 chrX 123499618 123499618 1 + G T UCEC 123499619 + 123499599 123499639 41 ATTCTTTCACAGGTATCACGGTTACATTTATACATACCGAG ATTCTTTCACAGGTATCACTGTTACATTTATACATACCGAG < 41bp 0.421926479422285 0.739056410893509 NA NA prediction 0.478112821787017 Functional Gain - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123499619 chrX:123499618 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_22625 0 0 0 0 2 SH2D1A chrX:123499674 5'GT 123499674 Upstream 57bp 20937 chr9 124936866 124936866 1 + G T THCA 124936867 + 124936847 124936887 41 TCTATAACCCAGTCACGAGGGTAGTCAAGGACTATAGGAAC TCTATAACCCAGTCACGAGTGTAGTCAAGGACTATAGGAAC < 41bp 0.627781950086919 0.866827173783404 NA NA prediction 0.47809044739297 Functional Gain - MORN5 ENSG00000185681 CDS Human protein_coding chr9:124936867 chr9:124936866 nonsynonymous SNV 0.073 1 20 hm7G_associated_SNPs_22626 0 0 0 0 2 MORN5 chr9:124936775 3'AG 124936775 Downstream 92bp 20938 chr9 124936866 124936866 1 + G T THCA 124936867 + 124936847 124936887 41 TCTATAACCCAGTCACGAGGGTAGTCAAGGACTATAGGAAC TCTATAACCCAGTCACGAGTGTAGTCAAGGACTATAGGAAC < 41bp 0.627781950086919 0.866827173783404 NA NA prediction 0.47809044739297 Functional Gain - MORN5 ENSG00000185681 CDS Human protein_coding chr9:124936867 chr9:124936866 nonsynonymous SNV 0.073 1 20 hm7G_associated_SNPs_22626 0 0 0 0 2 MORN5 chr9:124936906 5'GT 124936906 Upstream 41bp 20939 chr9 6460755 6460755 1 + G T COAD 6460756 + 6460736 6460776 41 ACATTGAAGACAATCTCAAGGACCAAAAAAGAACTTCGTGT ACATTGAAGACAATCTCAATGACCAAAAAAGAACTTCGTGT < 41bp 0.420038132518642 0.739032360067971 NA NA prediction 0.478064720135942 Functional Gain - UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6460756 chr9:6460755 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_22627 0 0 1 2 1 UHRF2 chr9:6460791 5'GT 6460791 Upstream 37bp 20940 chr12 133727658 133727658 1 + G T LUAD 133727659 + 133727639 133727679 41 TTGTGGACTTCACCAGGGAGGAGTGGAAGCTGCTGGACACT TTGTGGACTTCACCAGGGATGAGTGGAAGCTGCTGGACACT < 41bp 0.640145694583054 0.879172451062032 NA NA prediction 0.478053512957956 Functional Gain - ZNF10 ENSG00000090612;ENSG00000256223;ENSG00000256825 CDS Human other chr12:133727659 chr12:133727658 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22628 0 0 1 0 2 ZNF10 chr12:133727614 3'AG 133727614 Downstream 45bp 20941 chr12 133727658 133727658 1 + G T LUAD 133727659 + 133727639 133727679 41 TTGTGGACTTCACCAGGGAGGAGTGGAAGCTGCTGGACACT TTGTGGACTTCACCAGGGATGAGTGGAAGCTGCTGGACACT < 41bp 0.640145694583054 0.879172451062032 NA NA prediction 0.478053512957956 Functional Gain - ZNF10 ENSG00000090612;ENSG00000256223;ENSG00000256825 CDS Human other chr12:133727659 chr12:133727658 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22628 0 0 1 0 2 ZNF10 chr12:133727740 5'GT 133727740 Upstream 83bp 20942 chr6 42832462 42832462 1 + G T BLCA 42832463 + 42832443 42832483 41 TGCTCATGAGACACAGTTTGGCCGGAGTGACCAGCATGGCA TGCTCATGAGACACAGTTTTGCCGGAGTGACCAGCATGGCA < 41bp 0.41713290656674 0.739021761245605 NA NA prediction 0.478043522491211 Functional Gain - BICRAL ENSG00000112624 CDS Human protein_coding chr6:42832463 chr6:42832462 nonsynonymous SNV 0.567 0 20 hm7G_associated_SNPs_22629 0 0 0 0 1 BICRAL chr6:42832397 3'AG 42832397 Downstream 66bp 20943 chrX 100078976 100078976 1 + G T LUAD 100078977 + 100078957 100078997 41 AGGTAGTGATGAGAATTGTGGATCCGGAAATTGCCCTGGTG AGGTAGTGATGAGAATTGTTGATCCGGAAATTGCCCTGGTG < 41bp 0.64643899468499 0.885450770073963 NA NA prediction 0.478023550777945 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100078977 chrX:100078976 synonymous SNV . 0 20 hm7G_associated_SNPs_22631 0 0 1 0 1 CSTF2 chrX:100078994 5'GT 100078994 Upstream 19bp 20944 chr17 45811233 45811233 1 + G T COAD 45811234 + 45811214 45811254 41 GAGGTGTCGGGGAAACTGAGGGTCGCGCTCAACAACCACCT GAGGTGTCGGGGAAACTGATGGTCGCGCTCAACAACCACCT < 41bp 0.645861331283042 0.88483854589235 NA NA prediction 0.477954429218615 Functional Gain - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45811234 chr17:45811233 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22634 0 0 0 0 1 TBX21 chr17:45811311 5'GT 45811311 Upstream 79bp 20945 chr15 28632777 28632777 1 + G T COAD 28632778 + 28632758 28632798 41 AGGACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCCA AGGACATCTGGACAGTGAGTGGGAGGAGGCACCTCGGCCCA < 41bp 0.404849543641707 0.738965842117363 NA NA prediction 0.477931684234725 Functional Gain - GOLGA8F;GOLGA8G ENSG00000153684 CDS Human protein_coding chr15:28632778 chr15:28632777 nonsynonymous SNV 0.059 3 20 hm7G_associated_SNPs_22635 0 0 0 0 1 GOLGA8F;GOLGA8G chr15:28632748 3'AG 28632748 Downstream 30bp 20946 chr15 101432805 101432805 1 + G T GBM 101432806 + 101432786 101432826 41 AACCCTCAGATACTTTGCAGGGTGGGCAGACAAAATCCAGG AACCCTCAGATACTTTGCATGGTGGGCAGACAAAATCCAGG < 41bp 0.647805191911921 0.886769914320616 NA NA prediction 0.477929444817392 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432806 chr15:101432805 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_22636 0 0 0 0 2 ALDH1A3 chr15:101432715 3'AG 101432715 Downstream 91bp 20947 chr15 101432805 101432805 1 + G T GBM 101432806 + 101432786 101432826 41 AACCCTCAGATACTTTGCAGGGTGGGCAGACAAAATCCAGG AACCCTCAGATACTTTGCATGGTGGGCAGACAAAATCCAGG < 41bp 0.647805191911921 0.886769914320616 NA NA prediction 0.477929444817392 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432806 chr15:101432805 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_22636 0 0 0 0 2 ALDH1A3 chr15:101432844 5'GT 101432844 Upstream 40bp 20948 chr10 43606684 43606684 1 + G T LUAD 43606685 + 43606665 43606705 41 TCTGTGTGGAAAACTGCCAGGCATTCAGTGGCATCAACGTC TCTGTGTGGAAAACTGCCATGCATTCAGTGGCATCAACGTC < 41bp 0.659873227816365 0.898830715508842 NA NA prediction 0.477914975384954 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43606685 chr10:43606684 nonsynonymous SNV 0.959 0 20 hm7G_associated_SNPs_22637 0 0 0 0 1 RET chr10:43606655 3'AG 43606655 Downstream 30bp 20949 chr9 133914547 133914547 1 + G T UCEC 133914548 + 133914528 133914568 41 CCTCCAGTGCGATGACACAGGCACCTGCGCCTGCAAGCCCA CCTCCAGTGCGATGACACATGCACCTGCGCCTGCAAGCCCA < 41bp 0.378963328989003 0.738946480042538 NA NA prediction 0.477892960085077 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133914548 chr9:133914547 nonsynonymous SNV 0.007 4 20 hm7G_associated_SNPs_22638 0 0 0 0 2 LAMC3 chr9:133914518 3'AG 133914518 Downstream 30bp 20950 chr9 133914547 133914547 1 + G T UCEC 133914548 + 133914528 133914568 41 CCTCCAGTGCGATGACACAGGCACCTGCGCCTGCAAGCCCA CCTCCAGTGCGATGACACATGCACCTGCGCCTGCAAGCCCA < 41bp 0.378963328989003 0.738946480042538 NA NA prediction 0.477892960085077 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133914548 chr9:133914547 nonsynonymous SNV 0.007 4 20 hm7G_associated_SNPs_22638 0 0 0 0 2 LAMC3 chr9:133914635 5'GT 133914635 Upstream 89bp 20951 chr8 87447722 87447722 1 + G T UCEC 87447723 + 87447703 87447743 41 GCTTATGAACGCGGCTTTAGGTGGAAGCTTGCTCACTTCCG GCTTATGAACGCGGCTTTATGTGGAAGCTTGCTCACTTCCG < 41bp 0.422339650533858 0.738930771635386 NA NA prediction 0.477861543270771 Functional Gain - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87447723 chr8:87447722 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22639 0 0 1 0 2 WWP1 chr8:87447681 3'AG 87447681 Downstream 42bp 20952 chr8 87447722 87447722 1 + G T UCEC 87447723 + 87447703 87447743 41 GCTTATGAACGCGGCTTTAGGTGGAAGCTTGCTCACTTCCG GCTTATGAACGCGGCTTTATGTGGAAGCTTGCTCACTTCCG < 41bp 0.422339650533858 0.738930771635386 NA NA prediction 0.477861543270771 Functional Gain - WWP1 ENSG00000123124 CDS Human protein_coding chr8:87447723 chr8:87447722 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22639 0 0 1 0 2 WWP1 chr8:87447756 5'GT 87447756 Upstream 35bp 20953 chr5 141307750 141307750 1 + G T COAD 141307751 + 141307731 141307771 41 CTGGCCCTGCAGCTGGCAAGGCAGATCCACTTCCAGGCATC CTGGCCCTGCAGCTGGCAATGCAGATCCACTTCCAGGCATC < 41bp 0.384358083356505 0.73892944408307 NA NA prediction 0.47785888816614 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141307751 chr5:141307750 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_22640 0 0 1 0 1 KIAA0141 chr5:141307716 3'AG 141307716 Downstream 35bp 20954 chr10 102824017 102824017 1 + G T UCEC 102824018 + 102823998 102824038 41 CCTCCCGCCTTCACCCCCAGGGCCCCAGATCGTGTCACATC CCTCCCGCCTTCACCCCCATGGCCCCAGATCGTGTCACATC < 41bp 0.39167745341463 0.738920061291556 NA NA prediction 0.477840122583111 Functional Gain - KAZALD1;KAZALD1 ENSG00000107821 splicing Human protein_coding chr10:102824018 chr10:102824017 . 0.915 0 20 hm7G_associated_SNPs_22641 0 0 1 0 1 KAZALD1 chr10:102823963 3'AG 102823963 Downstream 55bp 20955 chr10 60560712 60560712 1 + G T OV 60560713 + 60560693 60560733 41 TTCCCATTCTGGGAATGCTGGTGACTTGAAACAGATGATGT TTCCCATTCTGGGAATGCTTGTGACTTGAAACAGATGATGT < 41bp 0.416081986937991 0.738877264062896 NA NA prediction 0.477754528125792 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560713 chr10:60560712 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22644 0 0 1 0 2 BICC1 chr10:60560650 3'AG 60560650 Downstream 63bp 20956 chr10 60560712 60560712 1 + G T OV 60560713 + 60560693 60560733 41 TTCCCATTCTGGGAATGCTGGTGACTTGAAACAGATGATGT TTCCCATTCTGGGAATGCTTGTGACTTGAAACAGATGATGT < 41bp 0.416081986937991 0.738877264062896 NA NA prediction 0.477754528125792 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560713 chr10:60560712 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22644 0 0 1 0 2 BICC1 chr10:60560806 5'GT 60560806 Upstream 95bp 20957 chrX 151909197 151909197 1 + G T BLCA 151909198 + 151909178 151909218 41 GGAAGTTCCAGGAACAAAAGGCTCTCCCTAAAAGACCACCG GGAAGTTCCAGGAACAAAATGCTCTCCCTAAAAGACCACCG < 41bp 0.436386400580098 0.738871800102693 NA NA prediction 0.477743600205385 Functional Gain - CSAG1 ENSG00000198930 CDS Human protein_coding chrX:151909198 chrX:151909197 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_22645 0 0 0 0 1 CSAG1 chrX:151909139 3'AG 151909139 Downstream 59bp 20958 chr8 121344394 121344394 1 + G T COAD 121344395 + 121344375 121344415 41 GCCAGGGCCTTCCGGGAAAGGATGGATCCTCGGGACCTCCA GCCAGGGCCTTCCGGGAAATGATGGATCCTCGGGACCTCCA < 41bp 0.409232676762593 0.738865654330178 NA NA prediction 0.477731308660356 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121344395 chr8:121344394 nonsynonymous SNV 0.339 2 20 hm7G_associated_SNPs_22646 0 0 0 0 2 COL14A1 chr8:121344380 3'AG 121344380 Downstream 15bp 20959 chr8 121344394 121344394 1 + G T COAD 121344395 + 121344375 121344415 41 GCCAGGGCCTTCCGGGAAAGGATGGATCCTCGGGACCTCCA GCCAGGGCCTTCCGGGAAATGATGGATCCTCGGGACCTCCA < 41bp 0.409232676762593 0.738865654330178 NA NA prediction 0.477731308660356 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121344395 chr8:121344394 nonsynonymous SNV 0.339 2 20 hm7G_associated_SNPs_22646 0 0 0 0 2 COL14A1 chr8:121344433 5'GT 121344433 Upstream 40bp 20960 chr18 48500887 48500887 1 + G T THYM 48500888 + 48500868 48500908 41 TGCTGGCTCTTTGACTGTGGGGAGGGAACACAGACACAGCT TGCTGGCTCTTTGACTGTGTGGAGGGAACACAGACACAGCT < 41bp 0.638316805551469 0.877171511360604 NA NA prediction 0.477709411618269 Functional Gain - ELAC1 ENSG00000141642;ENSG00000267699 CDS Human other chr18:48500888 chr18:48500887 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22648 0 0 0 0 1 ELAC1 chr18:48500931 5'GT 48500931 Upstream 45bp 20961 chr14 90485684 90485684 1 + G T UCEC 90485685 + 90485665 90485705 41 ATCTGTCCAAGGCTGCCTGGGGAGCATTGGAGAAGAATGGC ATCTGTCCAAGGCTGCCTGTGGAGCATTGGAGAAGAATGGC < 41bp 0.651528918034419 0.890371333692417 NA NA prediction 0.477684831315996 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90485685 chr14:90485684 nonsynonymous SNV 0.908 5 20 hm7G_associated_SNPs_22650 0 0 0 0 2 TDP1 chr14:90485660 3'AG 90485660 Downstream 25bp 20962 chr14 90485684 90485684 1 + G T UCEC 90485685 + 90485665 90485705 41 ATCTGTCCAAGGCTGCCTGGGGAGCATTGGAGAAGAATGGC ATCTGTCCAAGGCTGCCTGTGGAGCATTGGAGAAGAATGGC < 41bp 0.651528918034419 0.890371333692417 NA NA prediction 0.477684831315996 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90485685 chr14:90485684 nonsynonymous SNV 0.908 5 20 hm7G_associated_SNPs_22650 0 0 0 0 2 TDP1 chr14:90485762 5'GT 90485762 Upstream 79bp 20963 chrX 129055253 129055253 1 + G T UCEC 129055254 + 129055234 129055274 41 CCTCTGAGAGTGAGGAAGAGGAGGGAGGCACAGAAGATGTG CCTCTGAGAGTGAGGAAGATGAGGGAGGCACAGAAGATGTG < 41bp 0.635961717816489 0.874803972788594 NA NA prediction 0.47768450994421 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129055254 chrX:129055253 nonsynonymous SNV 0.390 0 20 hm7G_associated_SNPs_22651 0 0 1 0 1 UTP14A chrX:129055170 3'AG 129055170 Downstream 84bp 20964 chr1 209773417 209773417 1 + G T SARC 209773418 + 209773398 209773438 41 AAGAAGTCACCTGCCTTCCGGGACAGCAGCCTGGAGAATGA AAGAAGTCACCTGCCTTCCTGGACAGCAGCCTGGAGAATGA < 41bp 0.648075813304345 0.886915028386883 NA NA prediction 0.477678430165075 Functional Gain - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209773418 chr1:209773417 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_22652 0 0 0 0 2 CAMK1G chr1:209773328 3'AG 209773328 Downstream 90bp 20965 chr1 209773417 209773417 1 + G T SARC 209773418 + 209773398 209773438 41 AAGAAGTCACCTGCCTTCCGGGACAGCAGCCTGGAGAATGA AAGAAGTCACCTGCCTTCCTGGACAGCAGCCTGGAGAATGA < 41bp 0.648075813304345 0.886915028386883 NA NA prediction 0.477678430165075 Functional Gain - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209773418 chr1:209773417 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_22652 0 0 0 0 2 CAMK1G chr1:209773456 5'GT 209773456 Upstream 40bp 20966 chr20 60738638 60738638 1 + G T LUAD 60738639 + 60738619 60738659 41 GCCAGGGGAGCAGCATGATGGGGCAGCGGCCCATGGCGCCC GCCAGGGGAGCAGCATGATTGGGCAGCGGCCCATGGCGCCC < 41bp 0.654760023320899 0.893594726357961 NA NA prediction 0.477669406074124 Functional Gain - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60738639 chr20:60738638 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22655 0 0 1 0 1 SS18L1 chr20:60738678 5'GT 60738678 Upstream 41bp 20967 chr12 52284461 52284461 1 + G T LUSC 52284462 + 52284442 52284482 41 GACACCGTGTGGAGGATTCGGCAGCTGCTGAGGCGGCCCCA GACACCGTGTGGAGGATTCTGCAGCTGCTGAGGCGGCCCCA < 41bp 0.620958644735376 0.859780904309425 NA NA prediction 0.477644519148097 Functional Gain - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52284462 chr12:52284461 nonsynonymous SNV 0.896 4 20 hm7G_associated_SNPs_22656 0 0 0 0 1 ANKRD33 chr12:52284368 3'AG 52284368 Downstream 94bp 20968 chr3 182597416 182597416 1 + G T TGCT 182597417 + 182597397 182597437 41 CTGTATTATGCTGTCGTATGGCTCCACTGCAGAAAGCAAAA CTGTATTATGCTGTCGTATTGCTCCACTGCAGAAAGCAAAA < 41bp 0.414251049211761 0.738820936681271 NA NA prediction 0.477641873362543 Functional Gain - ATP11B ENSG00000058063 CDS Human protein_coding chr3:182597417 chr3:182597416 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22657 0 0 1 0 1 ATP11B chr3:182597437 5'GT 182597437 Upstream 22bp 20969 chr6 43192078 43192078 1 + G T UCEC 43192079 + 43192059 43192099 41 AGCAGGATGAGTTTGATGAGGAGCTGGACAATGACAGCTTC AGCAGGATGAGTTTGATGATGAGCTGGACAATGACAGCTTC < 41bp 0.418159424474888 0.738820281587245 NA NA prediction 0.47764056317449 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43192079 chr6:43192078 nonsynonymous SNV 0.989 0 20 hm7G_associated_SNPs_22658 0 0 0 0 1 CUL9 chr6:43191988 3'AG 43191988 Downstream 91bp 20970 chr7 143039089 143039089 1 + G T LUSC 143039090 + 143039070 143039110 41 TGATTTGCTTCGAATTAACGGGTCAGATTGCTCACATCCTG TGATTTGCTTCGAATTAACTGGTCAGATTGCTCACATCCTG < 41bp 0.391819162584217 0.738818602062861 NA NA prediction 0.477637204125722 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143039090 chr7:143039089 synonymous SNV . 0 20 hm7G_associated_SNPs_22659 0 0 0 0 1 CLCN1 chr7:143039022 3'AG 143039022 Downstream 68bp 20971 chr1 89844023 89844023 1 + G T UCEC 89844024 + 89844004 89844044 41 AAGGCAAAGTCCTCCCCAAGGCCTGATGGAGTAGAAGATTC AAGGCAAAGTCCTCCCCAATGCCTGATGGAGTAGAAGATTC < 41bp 0.40410303309934 0.738817615825577 NA NA prediction 0.477635231651155 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89844024 chr1:89844023 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_22660 0 0 0 0 1 GBP6 chr1:89843976 3'AG 89843976 Downstream 48bp 20972 chr4 88533528 88533528 1 + G T UCEC 88533529 + 88533509 88533549 41 TGGTGTCCTGGTGCATGAAGGTGATAGAGGAAGGCAAGAGA TGGTGTCCTGGTGCATGAATGTGATAGAGGAAGGCAAGAGA < 41bp 0.422854725743312 0.738800203703568 NA NA prediction 0.477600407407136 Functional Gain - DSPP ENSG00000152591 CDS Human protein_coding chr4:88533529 chr4:88533528 nonsynonymous SNV 0.018 1 20 hm7G_associated_SNPs_22663 0 0 0 0 1 DSPP chr4:88533474 3'AG 88533474 Downstream 55bp 20973 chrX 129139248 129139248 1 + G T LUSC 129139249 + 129139229 129139269 41 TACAGCGGCGTGCACAACTGGACCAGTTCTGACCGGATTCG TACAGCGGCGTGCACAACTTGACCAGTTCTGACCGGATTCG < 41bp 0.408498767853837 0.738793792994151 NA NA prediction 0.477587585988301 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129139249 chrX:129139248 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22666 0 0 1 0 1 BCORL1 chrX:129139293 5'GT 129139293 Upstream 46bp 20974 chr1 228246746 228246746 1 + G T COAD 228246747 + 228246727 228246767 41 GGCTGTCGGGCAGCTGCGAGGTGAAGACATGCTGGTGGTCG GGCTGTCGGGCAGCTGCGATGTGAAGACATGCTGGTGGTCG < 41bp 0.631379621177991 0.870161703249412 NA NA prediction 0.477564164142842 Functional Gain - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228246747 chr1:228246746 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_22668 0 0 0 0 1 WNT3A chr1:228246687 3'AG 228246687 Downstream 60bp 20975 chr11 120308055 120308055 1 + G T UCEC 120308056 + 120308036 120308076 41 AAGAGAGAATTTATCTAGAGGAAAACCCAGAGAAAAGTGAA AAGAGAGAATTTATCTAGATGAAAACCCAGAGAAAAGTGAA < 41bp 0.407775603158207 0.738772575834418 NA NA prediction 0.477545151668835 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120308056 chr11:120308055 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_22669 0 0 1 0 1 ARHGEF12 chr11:120308091 5'GT 120308091 Upstream 37bp 20976 chr17 37785427 37785427 1 + G T UCEC 37785428 + 37785408 37785448 41 CCTCCATCTCCTTAGATCCGGCGCAGGAGACCAACGCCTGC CCTCCATCTCCTTAGATCCTGCGCAGGAGACCAACGCCTGC < 41bp 0.648014406514597 0.886773017460363 NA NA prediction 0.477517221891531 Functional Gain - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37785428 chr17:37785427 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22670 0 0 0 0 2 PPP1R1B chr17:37785423 3'AG 37785423 Downstream 5bp 20977 chr17 37785427 37785427 1 + G T UCEC 37785428 + 37785408 37785448 41 CCTCCATCTCCTTAGATCCGGCGCAGGAGACCAACGCCTGC CCTCCATCTCCTTAGATCCTGCGCAGGAGACCAACGCCTGC < 41bp 0.648014406514597 0.886773017460363 NA NA prediction 0.477517221891531 Functional Gain - PPP1R1B ENSG00000131771 CDS Human protein_coding chr17:37785428 chr17:37785427 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22670 0 0 0 0 2 PPP1R1B chr17:37785483 5'GT 37785483 Upstream 57bp 20978 chr17 28887175 28887175 1 + G T LUSC 28887176 + 28887156 28887196 41 CAGGGTTCCTCATTCAGCTGGCTTCTCCGGGTGCTGAATGA CAGGGTTCCTCATTCAGCTTGCTTCTCCGGGTGCTGAATGA < 41bp 0.39438300777812 0.738755435246291 NA NA prediction 0.477510870492582 Functional Gain - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887176 chr17:28887175 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_22671 0 0 0 0 2 TBC1D29 chr17:28887135 3'AG 28887135 Downstream 41bp 20979 chr17 28887175 28887175 1 + G T LUSC 28887176 + 28887156 28887196 41 CAGGGTTCCTCATTCAGCTGGCTTCTCCGGGTGCTGAATGA CAGGGTTCCTCATTCAGCTTGCTTCTCCGGGTGCTGAATGA < 41bp 0.39438300777812 0.738755435246291 NA NA prediction 0.477510870492582 Functional Gain - TBC1D29 ENSG00000266733 CDS Human protein_coding chr17:28887176 chr17:28887175 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_22671 0 0 0 0 2 TBC1D29 chr17:28887200 5'GT 28887200 Upstream 26bp 20980 chr6 46108799 46108799 1 + G T UCEC 46108800 + 46108780 46108820 41 TTTTCTCAGATAGAACAGAGGTTTATAACAAACTGAAAAAC TTTTCTCAGATAGAACAGATGTTTATAACAAACTGAAAAAC < 41bp 0.592533630177661 0.831286976906525 NA NA prediction 0.477506693457728 Functional Gain - ENPP4 ENSG00000001561 CDS Human protein_coding chr6:46108800 chr6:46108799 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_22672 0 0 0 0 1 ENPP4 chr6:46108789 3'AG 46108789 Downstream 11bp 20981 chr14 76948407 76948407 1 + G T UCEC 76948408 + 76948388 76948428 41 CGTCAGAAATACAAGCGACGGCTGGACTCAGAGAGCAGCCC CGTCAGAAATACAAGCGACTGCTGGACTCAGAGAGCAGCCC < 41bp 0.651279243268416 0.890018150071675 NA NA prediction 0.477477813606517 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76948408 chr14:76948407 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22674 0 0 1 0 2 ESRRB chr14:76948359 3'AG 76948359 Downstream 49bp 20982 chr14 76948407 76948407 1 + G T UCEC 76948408 + 76948388 76948428 41 CGTCAGAAATACAAGCGACGGCTGGACTCAGAGAGCAGCCC CGTCAGAAATACAAGCGACTGCTGGACTCAGAGAGCAGCCC < 41bp 0.651279243268416 0.890018150071675 NA NA prediction 0.477477813606517 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76948408 chr14:76948407 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22674 0 0 1 0 2 ESRRB chr14:76948469 5'GT 76948469 Upstream 63bp 20983 chr1 20216956 20216956 1 + G T LUAD 20216957 + 20216937 20216977 41 AGCACAGACAGGAGACAGTGGACTACATGATAAAGCAGCGG AGCACAGACAGGAGACAGTTGACTACATGATAAAGCAGCGG < 41bp 0.638683261208047 0.877417219230339 NA NA prediction 0.477467916044584 Functional Gain - OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20216957 chr1:20216956 synonymous SNV . 0 20 hm7G_associated_SNPs_22676 0 0 1 0 2 OTUD3 chr1:20216878 3'AG 20216878 Downstream 79bp 20984 chr1 20216956 20216956 1 + G T LUAD 20216957 + 20216937 20216977 41 AGCACAGACAGGAGACAGTGGACTACATGATAAAGCAGCGG AGCACAGACAGGAGACAGTTGACTACATGATAAAGCAGCGG < 41bp 0.638683261208047 0.877417219230339 NA NA prediction 0.477467916044584 Functional Gain - OTUD3 ENSG00000169914 CDS Human protein_coding chr1:20216957 chr1:20216956 synonymous SNV . 0 20 hm7G_associated_SNPs_22676 0 0 1 0 2 OTUD3 chr1:20217026 5'GT 20217026 Upstream 71bp 20985 chr5 52344223 52344223 1 + G T LUSC 52344224 + 52344204 52344244 41 TCTGTGGGCACAGCAATGTGGGAATCAGTATTACACAACGG TCTGTGGGCACAGCAATGTTGGAATCAGTATTACACAACGG < 41bp 0.406493450552707 0.738728607203043 NA NA prediction 0.477457214406086 Functional Gain - ITGA2 ENSG00000164171 CDS Human protein_coding chr5:52344224 chr5:52344223 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_22678 0 0 1 0 1 ITGA2 chr5:52344193 3'AG 52344193 Downstream 31bp 20986 chr16 67857612 67857612 1 + G T UCEC 67857613 + 67857593 67857633 41 CCATCAAGAATGCGTATGAGGGGATGCTGGGTAAGAATGCA CCATCAAGAATGCGTATGATGGGATGCTGGGTAAGAATGCA < 41bp 0.407952297053511 0.738719680418168 NA NA prediction 0.477439360836336 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67857613 chr16:67857612 nonsynonymous SNV 0.627 1 20 hm7G_associated_SNPs_22680 0 0 0 0 2 TSNAXIP1 chr16:67857529 3'AG 67857529 Downstream 84bp 20987 chr16 67857612 67857612 1 + G T UCEC 67857613 + 67857593 67857633 41 CCATCAAGAATGCGTATGAGGGGATGCTGGGTAAGAATGCA CCATCAAGAATGCGTATGATGGGATGCTGGGTAAGAATGCA < 41bp 0.407952297053511 0.738719680418168 NA NA prediction 0.477439360836336 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67857613 chr16:67857612 nonsynonymous SNV 0.627 1 20 hm7G_associated_SNPs_22680 0 0 0 0 2 TSNAXIP1 chr16:67857622 5'GT 67857622 Upstream 11bp 20988 chrX 129306210 129306210 1 + G T LUAD 129306211 + 129306191 129306231 41 TGACCTTCCGCTTCTGCGGGGGTACCTTCCCAGACAAGACT TGACCTTCCGCTTCTGCGGTGGTACCTTCCCAGACAAGACT < 41bp 0.415063541872927 0.738672660776631 NA NA prediction 0.477345321553261 Functional Gain - RAB33A ENSG00000134594 CDS Human protein_coding chrX:129306211 chrX:129306210 synonymous SNV . 0 20 hm7G_associated_SNPs_22681 0 0 0 0 1 RAB33A chrX:129306294 5'GT 129306294 Upstream 85bp 20989 chrX 49093646 49093646 1 + G T rs782474626 49093647 + 49093627 49093667 41 TGCGTGTGATCAACCCTGCGGTGGGCTCTGGCCTCAGCCCT TGCGTGTGATCAACCCTGCTGTGGGCTCTGGCCTCAGCCCT < 41bp 0.399217656844666 0.738671733956294 NA NA prediction 0.477343467912588 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093647 chrX:49093646 synonymous SNV . 0 20 hm7G_associated_SNPs_22682 0 0 1 0 2 CCDC22 chrX:49093553 3'AG 49093553 Downstream 94bp 20990 chrX 49093646 49093646 1 + G T rs782474626 49093647 + 49093627 49093667 41 TGCGTGTGATCAACCCTGCGGTGGGCTCTGGCCTCAGCCCT TGCGTGTGATCAACCCTGCTGTGGGCTCTGGCCTCAGCCCT < 41bp 0.399217656844666 0.738671733956294 NA NA prediction 0.477343467912588 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49093647 chrX:49093646 synonymous SNV . 0 20 hm7G_associated_SNPs_22682 0 0 1 0 2 CCDC22 chrX:49093730 5'GT 49093730 Upstream 85bp 20991 chr3 107510094 107510094 1 + G T OV 107510095 + 107510075 107510115 41 CATTGTTTTTAGGAAGTGGGGATAAATGGTCAAACAAGCAA CATTGTTTTTAGGAAGTGGTGATAAATGGTCAAACAAGCAA < 41bp 0.418163168318755 0.738671567532956 NA NA prediction 0.477343135065913 Functional Gain - BBX ENSG00000114439 CDS Human protein_coding chr3:107510095 chr3:107510094 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22683 0 0 1 0 2 BBX chr3:107510087 3'AG 107510087 Downstream 8bp 20992 chr3 107510094 107510094 1 + G T OV 107510095 + 107510075 107510115 41 CATTGTTTTTAGGAAGTGGGGATAAATGGTCAAACAAGCAA CATTGTTTTTAGGAAGTGGTGATAAATGGTCAAACAAGCAA < 41bp 0.418163168318755 0.738671567532956 NA NA prediction 0.477343135065913 Functional Gain - BBX ENSG00000114439 CDS Human protein_coding chr3:107510095 chr3:107510094 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22683 0 0 1 0 2 BBX chr3:107510146 5'GT 107510146 Upstream 53bp 20993 chr1 175049472 175049472 1 + G T LUSC 175049473 + 175049453 175049493 41 GCACAGCTATGAGATTCTTGGTTTGCTGCCTGGAACCAAGT GCACAGCTATGAGATTCTTTGTTTGCTGCCTGGAACCAAGT < 41bp 0.39522033635875 0.738669720004201 NA NA prediction 0.477339440008402 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175049473 chr1:175049472 nonsynonymous SNV 0.019 4 20 hm7G_associated_SNPs_22684 0 0 0 0 1 TNN chr1:175049562 5'GT 175049562 Upstream 91bp 20994 chr11 70208521 70208521 1 + G T LUSC 70208522 + 70208502 70208542 41 ATCAGCAACCCCCTGCACAGGCTGAAGCTGAGGCTGGCCAT ATCAGCAACCCCCTGCACATGCTGAAGCTGAGGCTGGCCAT < 41bp 0.650659162972096 0.889327320573153 NA NA prediction 0.477336315202114 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70208522 chr11:70208521 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22685 0 0 1 0 1 PPFIA1 chr11:70208594 5'GT 70208594 Upstream 74bp 20995 chr10 75000742 75000742 1 + G T UCEC 75000743 + 75000723 75000763 41 TACAAAATCTCAAAGCGGAGGCAGACCAGTCTCTCGAACCA TACAAAATCTCAAAGCGGATGCAGACCAGTCTCTCGAACCA < 41bp 0.614163450843435 0.852818539025718 NA NA prediction 0.477310176364566 Functional Gain - FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:75000743 chr10:75000742 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_22686 0 0 0 0 1 FAM149B1 chr10:75000704 3'AG 75000704 Downstream 39bp 20996 chr1 166990920 166990920 1 + G T LUAD 166990921 + 166990901 166990941 41 CTAGGTGACTACCCATCTAGGGCAAAAATTTCTGGCCAAAA CTAGGTGACTACCCATCTATGGCAAAAATTTCTGGCCAAAA < 41bp 0.423523269754609 0.738651729793888 NA NA prediction 0.477303459587777 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166990921 chr1:166990920 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_22688 0 0 0 1 1 MAEL chr1:166990905 3'AG 166990905 Downstream 16bp 20997 chr8 79598800 79598800 1 + G T SKCM 79598801 + 79598781 79598821 41 TTGATCAGGCCCTCAAAGAGGGTGGCAAACTTCCTCCTCCT TTGATCAGGCCCTCAAAGATGGTGGCAAACTTCCTCCTCCT < 41bp 0.636669220910831 0.875318846875062 NA NA prediction 0.477299251928463 Functional Gain - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79598801 chr8:79598800 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22690 0 0 0 0 2 ZC2HC1A chr8:79598702 3'AG 79598702 Downstream 99bp 20998 chr8 79598800 79598800 1 + G T SKCM 79598801 + 79598781 79598821 41 TTGATCAGGCCCTCAAAGAGGGTGGCAAACTTCCTCCTCCT TTGATCAGGCCCTCAAAGATGGTGGCAAACTTCCTCCTCCT < 41bp 0.636669220910831 0.875318846875062 NA NA prediction 0.477299251928463 Functional Gain - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79598801 chr8:79598800 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22690 0 0 0 0 2 ZC2HC1A chr8:79598843 5'GT 79598843 Upstream 44bp 20999 chrX 24745975 24745975 1 + G T LUAD 24745976 + 24745956 24745996 41 ACCTGGTGAATGTAATTAAGGATGTCAGTCCACCACCGCTT ACCTGGTGAATGTAATTAATGATGTCAGTCCACCACCGCTT < 41bp 0.406589779578736 0.738645323710336 NA NA prediction 0.477290647420671 Functional Gain - POLA1 ENSG00000101868 CDS Human protein_coding chrX:24745976 chrX:24745975 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_22691 0 0 1 0 2 POLA1 chrX:24745899 3'AG 24745899 Downstream 77bp 21000 chrX 24745975 24745975 1 + G T LUAD 24745976 + 24745956 24745996 41 ACCTGGTGAATGTAATTAAGGATGTCAGTCCACCACCGCTT ACCTGGTGAATGTAATTAATGATGTCAGTCCACCACCGCTT < 41bp 0.406589779578736 0.738645323710336 NA NA prediction 0.477290647420671 Functional Gain - POLA1 ENSG00000101868 CDS Human protein_coding chrX:24745976 chrX:24745975 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_22691 0 0 1 0 2 POLA1 chrX:24746053 5'GT 24746053 Upstream 79bp 21001 chrX 55028721 55028721 1 + G T LUSC 55028722 + 55028702 55028742 41 AGGACAATGCTACCCCAGTGGCTGCTGAAGAAGGCCTGAGT AGGACAATGCTACCCCAGTTGCTGCTGAAGAAGGCCTGAGT < 41bp 0.651222965378163 0.889844457608647 NA NA prediction 0.477242984460966 Functional Gain - APEX2 ENSG00000169188 CDS Human protein_coding chrX:55028722 chrX:55028721 synonymous SNV . 0 20 hm7G_associated_SNPs_22695 0 0 1 0 1 APEX2 chrX:55028684 3'AG 55028684 Downstream 38bp 21002 chr10 17742209 17742209 1 + G T UCEC 17742210 + 17742190 17742230 41 TTAAAACAGAGAAGAAGACGGTACAATTTAGTGATGATGTT TTAAAACAGAGAAGAAGACTGTACAATTTAGTGATGATGTT < 41bp 0.623884741993874 0.862498785280967 NA NA prediction 0.477228086574185 Functional Gain - STAM ENSG00000136738 CDS Human protein_coding chr10:17742210 chr10:17742209 synonymous SNV . 0 20 hm7G_associated_SNPs_22697 0 0 1 0 2 STAM chr10:17742190 3'AG 17742190 Downstream 20bp 21003 chr10 17742209 17742209 1 + G T UCEC 17742210 + 17742190 17742230 41 TTAAAACAGAGAAGAAGACGGTACAATTTAGTGATGATGTT TTAAAACAGAGAAGAAGACTGTACAATTTAGTGATGATGTT < 41bp 0.623884741993874 0.862498785280967 NA NA prediction 0.477228086574185 Functional Gain - STAM ENSG00000136738 CDS Human protein_coding chr10:17742210 chr10:17742209 synonymous SNV . 0 20 hm7G_associated_SNPs_22697 0 0 1 0 2 STAM chr10:17742278 5'GT 17742278 Upstream 70bp 21004 chr3 186915555 186915555 1 + G T OV 186915556 + 186915536 186915576 41 CTGGTTGGAAGCAGTACCTGGAATTGCATGCTTCAGGCAGG CTGGTTGGAAGCAGTACCTTGAATTGCATGCTTCAGGCAGG < 41bp 0.643406984307557 0.882020309403996 NA NA prediction 0.477226650192878 Functional Gain - RTP1 ENSG00000175077 CDS Human protein_coding chr3:186915556 chr3:186915555 synonymous SNV . 0 20 hm7G_associated_SNPs_22698 0 0 0 0 1 RTP1 chr3:186915575 5'GT 186915575 Upstream 21bp 21005 chr1 67242971 67242971 1 + G T LUAD 67242972 + 67242952 67242992 41 AAGGACTTGATGATTCCACGGTATAAACTAATTGTGATTGT AAGGACTTGATGATTCCACTGTATAAACTAATTGTGATTGT < 41bp 0.450211341548472 0.738591114513234 NA NA prediction 0.477182229026468 Functional Gain - TCTEX1D1 ENSG00000152760 CDS Human protein_coding chr1:67242972 chr1:67242971 nonsynonymous SNV 0.684 3 20 hm7G_associated_SNPs_22703 0 0 0 0 1 TCTEX1D1 chr1:67242934 3'AG 67242934 Downstream 38bp 21006 chr4 160264507 160264507 1 + G T SARC 160264508 + 160264488 160264528 41 AAAAGAAATTCGTCACGTTGGCCGAATGGCTTCAGTGAACA AAAAGAAATTCGTCACGTTTGCCGAATGGCTTCAGTGAACA < 41bp 0.395809724321108 0.738583277558887 NA NA prediction 0.477166555117775 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264508 chr4:160264507 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_22704 0 0 1 0 2 RAPGEF2 chr4:160264433 3'AG 160264433 Downstream 75bp 21007 chr4 160264507 160264507 1 + G T SARC 160264508 + 160264488 160264528 41 AAAAGAAATTCGTCACGTTGGCCGAATGGCTTCAGTGAACA AAAAGAAATTCGTCACGTTTGCCGAATGGCTTCAGTGAACA < 41bp 0.395809724321108 0.738583277558887 NA NA prediction 0.477166555117775 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264508 chr4:160264507 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_22704 0 0 1 0 2 RAPGEF2 chr4:160264556 5'GT 160264556 Upstream 50bp 21008 chr22 37688669 37688669 1 + G T LUSC 37688670 + 37688650 37688690 41 GTCTCTCTGTAGAGCCCGCGGAGCTGAGCAGCGGGGAGACG GTCTCTCTGTAGAGCCCGCTGAGCTGAGCAGCGGGGAGACG < 41bp 0.623039251162431 0.861604563817827 NA NA prediction 0.477130625310791 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37688670 chr22:37688669 synonymous SNV . 0 20 hm7G_associated_SNPs_22707 0 0 1 0 3 CYTH4 chr22:37688643 3'AG 37688643 Downstream 27bp 21009 chr22 37688669 37688669 1 + G T LUSC 37688670 + 37688650 37688690 41 GTCTCTCTGTAGAGCCCGCGGAGCTGAGCAGCGGGGAGACG GTCTCTCTGTAGAGCCCGCTGAGCTGAGCAGCGGGGAGACG < 41bp 0.623039251162431 0.861604563817827 NA NA prediction 0.477130625310791 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37688670 chr22:37688669 synonymous SNV . 0 20 hm7G_associated_SNPs_22707 0 0 1 0 3 CYTH4 chr22:37688662 3'AG 37688662 Downstream 8bp 21010 chr22 37688669 37688669 1 + G T LUSC 37688670 + 37688650 37688690 41 GTCTCTCTGTAGAGCCCGCGGAGCTGAGCAGCGGGGAGACG GTCTCTCTGTAGAGCCCGCTGAGCTGAGCAGCGGGGAGACG < 41bp 0.623039251162431 0.861604563817827 NA NA prediction 0.477130625310791 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37688670 chr22:37688669 synonymous SNV . 0 20 hm7G_associated_SNPs_22707 0 0 1 0 3 CYTH4 chr22:37688744 5'GT 37688744 Upstream 76bp 21011 chr6 154412132 154412132 1 + G T BRCA 154412133 + 154412113 154412153 41 TCTCATCCAACCTGGTACTGGGAAAACCTGCTGAAGATCTG TCTCATCCAACCTGGTACTTGGAAAACCTGCTGAAGATCTG < 41bp 0.448193278562815 0.738564560287688 NA NA prediction 0.477129120575375 Functional Gain - OPRM1 ENSG00000112038 CDS Human protein_coding chr6:154412133 chr6:154412132 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22708 0 0 0 1 1 OPRM1 chr6:154412087 3'AG 154412087 Downstream 46bp 21012 chrX 70345907 70345907 1 + G T LUAD 70345908 + 70345888 70345928 41 GGGGAGGATGGGCAGAAGCGGCGACGCAACCGGCCTGAAGC GGGGAGGATGGGCAGAAGCTGCGACGCAACCGGCCTGAAGC < 41bp 0.397528590818744 0.738555047948345 NA NA prediction 0.47711009589669 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70345908 chrX:70345907 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_22709 0 0 1 0 2 MED12 chrX:70345886 3'AG 70345886 Downstream 22bp 21013 chrX 70345907 70345907 1 + G T LUAD 70345908 + 70345888 70345928 41 GGGGAGGATGGGCAGAAGCGGCGACGCAACCGGCCTGAAGC GGGGAGGATGGGCAGAAGCTGCGACGCAACCGGCCTGAAGC < 41bp 0.397528590818744 0.738555047948345 NA NA prediction 0.47711009589669 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70345908 chrX:70345907 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_22709 0 0 1 0 2 MED12 chrX:70346004 5'GT 70346004 Upstream 98bp 21014 chrX 153698040 153698040 1 + G T THCA 153698041 + 153698021 153698061 41 GGGCCTCCAGGTGACAGACGGTTCCTTGGTGGCATTGGTGC GGGCCTCCAGGTGACAGACTGTTCCTTGGTGGCATTGGTGC < 41bp 0.403417714346926 0.738542353387785 NA NA prediction 0.47708470677557 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153698041 chrX:153698040 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_22710 0 0 1 0 2 PLXNA3 chrX:153698031 3'AG 153698031 Downstream 10bp 21015 chrX 153698040 153698040 1 + G T THCA 153698041 + 153698021 153698061 41 GGGCCTCCAGGTGACAGACGGTTCCTTGGTGGCATTGGTGC GGGCCTCCAGGTGACAGACTGTTCCTTGGTGGCATTGGTGC < 41bp 0.403417714346926 0.738542353387785 NA NA prediction 0.47708470677557 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153698041 chrX:153698040 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_22710 0 0 1 0 2 PLXNA3 chrX:153698127 5'GT 153698127 Upstream 88bp 21016 chr11 111796715 111796715 1 + G T UCEC 111796716 + 111796696 111796736 41 ACAGGACATACGTATGAACGGGTGTTACAGCAGCAAGGGTC ACAGGACATACGTATGAACTGGTGTTACAGCAGCAAGGGTC < 41bp 0.634410155310816 0.872952126588624 NA NA prediction 0.477083942555616 Functional Gain - C11orf52 ENSG00000149300 CDS Human protein_coding chr11:111796716 chr11:111796715 nonsynonymous SNV 0.038 0 20 hm7G_associated_SNPs_22712 0 0 0 0 1 C11orf52 chr11:111796684 3'AG 111796684 Downstream 32bp 21017 chr4 88047456 88047456 1 + G T STAD 88047457 + 88047437 88047477 41 CAAGCAGAGAAGAGTAGAGGGGAAGGGCTCCAGAAGCTCCT CAAGCAGAGAAGAGTAGAGTGGAAGGGCTCCAGAAGCTCCT < 41bp 0.394227241749388 0.738510598247385 NA NA prediction 0.477021196494771 Functional Gain - AFF1 ENSG00000172493 CDS Human protein_coding chr4:88047457 chr4:88047456 nonsynonymous SNV 0.935 4 20 hm7G_associated_SNPs_22715 0 0 0 0 1 AFF1 chr4:88047488 5'GT 88047488 Upstream 33bp 21018 chr6 36993702 36993702 1 + G T UCEC 36993703 + 36993683 36993723 41 CCAAGGAGGACAAGAGGCGGGGCATCCTGGAGGTGAGGGCC CCAAGGAGGACAAGAGGCGTGGCATCCTGGAGGTGAGGGCC < 41bp 0.661108840972385 0.899598260599781 NA NA prediction 0.476978839254792 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36993703 chr6:36993702 synonymous SNV . 0 20 hm7G_associated_SNPs_22717 0 0 0 0 1 FGD2 chr6:36993714 5'GT 36993714 Upstream 13bp 21019 chr7 30868348 30868348 1 + G T UCEC 30868349 + 30868329 30868369 41 GGTGAGCTGGGTGCCCTGCGGCTCGGTAGGTGCAGCGGGTG GGTGAGCTGGGTGCCCTGCTGCTCGGTAGGTGCAGCGGGTG < 41bp 0.649733673400784 0.888215819573659 NA NA prediction 0.47696429234575 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30868349 chr7:30868348 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_22718 0 0 0 0 2 MINDY4 chr7:30868295 3'AG 30868295 Downstream 54bp 21020 chr7 30868348 30868348 1 + G T UCEC 30868349 + 30868329 30868369 41 GGTGAGCTGGGTGCCCTGCGGCTCGGTAGGTGCAGCGGGTG GGTGAGCTGGGTGCCCTGCTGCTCGGTAGGTGCAGCGGGTG < 41bp 0.649733673400784 0.888215819573659 NA NA prediction 0.47696429234575 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30868349 chr7:30868348 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_22718 0 0 0 0 2 MINDY4 chr7:30868353 5'GT 30868353 Upstream 6bp 21021 chr1 36475180 36475180 1 + G T COAD 36475181 + 36475161 36475201 41 CTGCACCAGATAGACAAGAGGAAATTAGCAGATTGGTTAGT CTGCACCAGATAGACAAGATGAAATTAGCAGATTGGTTAGT < 41bp 0.426103955066062 0.738478627097392 NA NA prediction 0.476957254194784 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36475181 chr1:36475180 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_22720 0 0 1 0 1 AGO3 chr1:36475195 5'GT 36475195 Upstream 16bp 21022 chr3 130340692 130340692 1 + G T STAD 130340693 + 130340673 130340713 41 AGGACCCGGAGGAGAGGCAGGGAATCAAGGCCGTTTGGGAA AGGACCCGGAGGAGAGGCATGGAATCAAGGCCGTTTGGGAA < 41bp 0.648738380466055 0.88718816134367 NA NA prediction 0.47689956175523 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130340693 chr3:130340692 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_22722 0 0 0 0 2 COL6A6 chr3:130340665 3'AG 130340665 Downstream 28bp 21023 chr3 130340692 130340692 1 + G T STAD 130340693 + 130340673 130340713 41 AGGACCCGGAGGAGAGGCAGGGAATCAAGGCCGTTTGGGAA AGGACCCGGAGGAGAGGCATGGAATCAAGGCCGTTTGGGAA < 41bp 0.648738380466055 0.88718816134367 NA NA prediction 0.47689956175523 Functional Gain - COL6A6 ENSG00000206384 CDS Human protein_coding chr3:130340693 chr3:130340692 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_22722 0 0 0 0 2 COL6A6 chr3:130340727 5'GT 130340727 Upstream 36bp 21024 chr5 916038 916038 1 + G T LUAD 916039 + 916019 916059 41 GAAGAGCGAGGGCCTCAGCGGCCGGGTCCTGAGAAAACTCC GAAGAGCGAGGGCCTCAGCTGCCGGGTCCTGAGAAAACTCC < 41bp 0.650750548111104 0.8891936633276 NA NA prediction 0.476886230432992 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:916039 chr5:916038 nonsynonymous SNV 0.971 5 20 hm7G_associated_SNPs_22723 0 0 1 0 2 TRIP13 chr5:916019 3'AG 916019 Downstream 20bp 21025 chr5 916038 916038 1 + G T LUAD 916039 + 916019 916059 41 GAAGAGCGAGGGCCTCAGCGGCCGGGTCCTGAGAAAACTCC GAAGAGCGAGGGCCTCAGCTGCCGGGTCCTGAGAAAACTCC < 41bp 0.650750548111104 0.8891936633276 NA NA prediction 0.476886230432992 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:916039 chr5:916038 nonsynonymous SNV 0.971 5 20 hm7G_associated_SNPs_22723 0 0 1 0 2 TRIP13 chr5:916088 5'GT 916088 Upstream 51bp 21026 chr8 22141694 22141694 1 + G T UCEC 22141695 + 22141675 22141715 41 AGAGCTTATTGTGAAGCAAGGATCAAAAGGAACACCTCAGT AGAGCTTATTGTGAAGCAATGATCAAAAGGAACACCTCAGT < 41bp 0.642235462464478 0.880669996305113 NA NA prediction 0.476869067681269 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22141695 chr8:22141694 stopgain 0.977 1 20 hm7G_associated_SNPs_22725 0 0 0 0 2 PIWIL2 chr8:22141675 3'AG 22141675 Downstream 20bp 21027 chr8 22141694 22141694 1 + G T UCEC 22141695 + 22141675 22141715 41 AGAGCTTATTGTGAAGCAAGGATCAAAAGGAACACCTCAGT AGAGCTTATTGTGAAGCAATGATCAAAAGGAACACCTCAGT < 41bp 0.642235462464478 0.880669996305113 NA NA prediction 0.476869067681269 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22141695 chr8:22141694 stopgain 0.977 1 20 hm7G_associated_SNPs_22725 0 0 0 0 2 PIWIL2 chr8:22141785 5'GT 22141785 Upstream 92bp 21028 chr2 113742493 113742493 1 + G T LIHC 113742494 + 113742474 113742514 41 TACCGTGCCAAGACTGGTAGGACCTCCACCCTTGAGTCTGT TACCGTGCCAAGACTGGTATGACCTCCACCCTTGAGTCTGT < 41bp 0.427666322495964 0.738421081453726 NA NA prediction 0.476842162907452 Functional Gain - IL36G ENSG00000136688 CDS Human protein_coding chr2:113742494 chr2:113742493 nonsynonymous SNV 0.294 2 20 hm7G_associated_SNPs_22727 0 0 0 0 1 IL36G chr2:113742417 3'AG 113742417 Downstream 77bp 21029 chr7 79842084 79842084 1 + G T KIRC 79842085 + 79842065 79842105 41 AGCATATGTAACAACAAGTGGTTTACAGATACATCCATTAT AGCATATGTAACAACAAGTTGTTTACAGATACATCCATTAT < 41bp 0.620077315359306 0.858466512515632 NA NA prediction 0.476778394312653 Functional Gain - GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79842085 chr7:79842084 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22732 0 0 1 0 1 GNAI1 chr7:79842032 3'AG 79842032 Downstream 53bp 21030 chr3 149216648 149216648 1 + G T OV 149216649 + 149216629 149216669 41 CGCCATCCAGGTGGTCAATGGCCTCCTGGGGACCCTCTGTG CGCCATCCAGGTGGTCAATTGCCTCCTGGGGACCCTCTGTG < 41bp 0.641334659435993 0.879711702244761 NA NA prediction 0.476754085617536 Functional Gain - TM4SF4 ENSG00000169903 CDS Human protein_coding chr3:149216649 chr3:149216648 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22733 0 0 0 0 1 TM4SF4 chr3:149216698 5'GT 149216698 Upstream 51bp 21031 chr10 96741003 96741003 1 + G T UCEC 96741004 + 96740984 96741024 41 AGCCCCTGCATGCAAGACAGGAGCCACATGCCCTACACAGA AGCCCCTGCATGCAAGACATGAGCCACATGCCCTACACAGA < 41bp 0.642964823428931 0.881336015767942 NA NA prediction 0.476742384678023 Functional Gain - CYP2C9 ENSG00000138109 CDS Human protein_coding chr10:96741004 chr10:96741003 nonsynonymous SNV 0.253 3 20 hm7G_associated_SNPs_22734 0 0 0 0 1 CYP2C9 chr10:96740940 3'AG 96740940 Downstream 64bp 21032 chr10 43291940 43291940 1 + G T UCEC 43291941 + 43291921 43291961 41 GGCTAATGATGCCAAAGGAGGAAAAACAAATGGACTTGAAC GGCTAATGATGCCAAAGGATGAAAAACAAATGGACTTGAAC < 41bp 0.412871903502893 0.738365878095113 NA NA prediction 0.476731756190226 Functional Gain - BMS1 ENSG00000165733 CDS Human protein_coding chr10:43291941 chr10:43291940 nonsynonymous SNV 0.885 4 20 hm7G_associated_SNPs_22735 0 0 1 0 1 BMS1 chr10:43291922 3'AG 43291922 Downstream 19bp 21033 chr8 42186654 42186654 1 + G T LUAD 42186655 + 42186635 42186675 41 TCTTTAGTGAAGAACTGGTGGCTGAAGCACATAACCTCTGC TCTTTAGTGAAGAACTGGTTGCTGAAGCACATAACCTCTGC < 41bp 0.625669154518301 0.864023036608426 NA NA prediction 0.47670776418025 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42186655 chr8:42186654 synonymous SNV . 0 20 hm7G_associated_SNPs_22737 0 0 1 0 2 IKBKB chr8:42186642 3'AG 42186642 Downstream 13bp 21034 chr8 42186654 42186654 1 + G T LUAD 42186655 + 42186635 42186675 41 TCTTTAGTGAAGAACTGGTGGCTGAAGCACATAACCTCTGC TCTTTAGTGAAGAACTGGTTGCTGAAGCACATAACCTCTGC < 41bp 0.625669154518301 0.864023036608426 NA NA prediction 0.47670776418025 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42186655 chr8:42186654 synonymous SNV . 0 20 hm7G_associated_SNPs_22737 0 0 1 0 2 IKBKB chr8:42186732 5'GT 42186732 Upstream 79bp 21035 chr11 67187016 67187016 1 - C A LUSC 67187015 - 67186995 67187035 41 TGCACCCAGCTCTGCCCGCGGGTGCAGACGCCATGCCTGCC TGCACCCAGCTCTGCCCGCTGGTGCAGACGCCATGCCTGCC < 41bp 0.652602847806433 0.89093892416084 NA NA prediction 0.476672152708813 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67187015 chr11:67187016 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_22739 0 0 0 0 1 CARNS1 chr11:67187068 3'AG 67187068 Downstream 53bp 21036 chr3 119336897 119336897 1 + G T LUAD 119336898 + 119336878 119336918 41 TGATCTGTGATCACATGAGGGCTGTGCACCTCTACATCAGC TGATCTGTGATCACATGAGTGCTGTGCACCTCTACATCAGC < 41bp 0.396903182781044 0.738318826799918 NA NA prediction 0.476637653599837 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119336898 chr3:119336897 nonsynonymous SNV 0.672 5 20 hm7G_associated_SNPs_22740 0 0 0 0 1 PLA1A chr3:119336866 3'AG 119336866 Downstream 32bp 21037 chr12 46125020 46125020 1 + G T BLCA 46125021 + 46125001 46125041 41 TTTCTGAGAAGAATCAGTGGGGAGAAATTGTTGAAGAGTTC TTTCTGAGAAGAATCAGTGTGGAGAAATTGTTGAAGAGTTC < 41bp 0.415835913322385 0.738317436786953 NA NA prediction 0.476634873573905 Functional Gain - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46125021 chr12:46125020 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22741 0 0 1 0 2 ARID2 chr12:46125000 3'AG 46125000 Downstream 21bp 21038 chr12 46125020 46125020 1 + G T BLCA 46125021 + 46125001 46125041 41 TTTCTGAGAAGAATCAGTGGGGAGAAATTGTTGAAGAGTTC TTTCTGAGAAGAATCAGTGTGGAGAAATTGTTGAAGAGTTC < 41bp 0.415835913322385 0.738317436786953 NA NA prediction 0.476634873573905 Functional Gain - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46125021 chr12:46125020 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22741 0 0 1 0 2 ARID2 chr12:46125097 5'GT 46125097 Upstream 78bp 21039 chr11 68207301 68207301 1 + G T THCA 68207302 + 68207282 68207322 41 CCTGATGGGGGGCCGGGGCGGGGTGCCCCTCTACGACCGGA CCTGATGGGGGGCCGGGGCTGGGTGCCCCTCTACGACCGGA < 41bp 0.391894852525748 0.738297026058346 NA NA prediction 0.476594052116691 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68207302 chr11:68207301 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_22743 0 0 1 0 2 LRP5 chr11:68207245 3'AG 68207245 Downstream 57bp 21040 chr11 68207301 68207301 1 + G T THCA 68207302 + 68207282 68207322 41 CCTGATGGGGGGCCGGGGCGGGGTGCCCCTCTACGACCGGA CCTGATGGGGGGCCGGGGCTGGGTGCCCCTCTACGACCGGA < 41bp 0.391894852525748 0.738297026058346 NA NA prediction 0.476594052116691 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68207302 chr11:68207301 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_22743 0 0 1 0 2 LRP5 chr11:68207384 5'GT 68207384 Upstream 84bp 21041 chr2 135711878 135711878 1 + G T UCEC 135711879 + 135711859 135711899 41 TCTAGCTCCAGCTCTTCAAGGAAGAGGCTGCATGTCAATGA TCTAGCTCCAGCTCTTCAATGAAGAGGCTGCATGTCAATGA < 41bp 0.429332066087832 0.738288210608013 NA NA prediction 0.476576421216026 Functional Gain - CCNT2 ENSG00000082258 CDS Human protein_coding chr2:135711879 chr2:135711878 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22744 0 0 1 0 1 CCNT2 chr2:135711949 5'GT 135711949 Upstream 72bp 21042 chr20 33842500 33842500 1 + G T UCEC 33842501 + 33842481 33842521 41 CCCTGGCCCAGGGATTGGAGGAGACACCCACTTTGACTCCG CCCTGGCCCAGGGATTGGATGAGACACCCACTTTGACTCCG < 41bp 0.389216599192478 0.738286792966199 NA NA prediction 0.476573585932399 Functional Gain - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33842501 chr20:33842500 stopgain 1.000 1 20 hm7G_associated_SNPs_22745 0 0 0 0 1 MMP24 chr20:33842557 5'GT 33842557 Upstream 58bp 21043 chr17 34964728 34964728 1 + G T LUAD 34964729 + 34964709 34964749 41 GGAAGGGTTTCCCCACAGAGGGGGAGAGAAGGCAGCTTCTC GGAAGGGTTTCCCCACAGATGGGGAGAGAAGGCAGCTTCTC < 41bp 0.636400895102721 0.874683004375325 NA NA prediction 0.476564218545208 Functional Gain - MRM1 ENSG00000129282 CDS Human other chr17:34964729 chr17:34964728 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_22746 0 0 0 0 1 MRM1 chr17:34964679 3'AG 34964679 Downstream 50bp 21044 chr1 26104684 26104684 1 + G T ESCA 26104685 + 26104665 26104705 41 ATTCTGGACCACAAGATGGGGCACCTGGCCTGTTTCTCCGG ATTCTGGACCACAAGATGGTGCACCTGGCCTGTTTCTCCGG < 41bp 0.385178701188385 0.738281198965064 NA NA prediction 0.476562397930129 Functional Gain - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26104685 chr1:26104684 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22747 0 0 0 0 1 MAN1C1 chr1:26104596 3'AG 26104596 Downstream 89bp 21045 chr1 16059003 16059003 1 + G T LUSC 16059004 + 16058984 16059024 41 GCGCCGTCTCCACCGAGCCGGGCAAGGAGTACTGCGTCTTG GCGCCGTCTCCACCGAGCCTGGCAAGGAGTACTGCGTCTTG < 41bp 0.399054975930822 0.738257430825193 NA NA prediction 0.476514861650386 Functional Gain - PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16059004 chr1:16059003 synonymous SNV . 0 20 hm7G_associated_SNPs_22750 0 0 1 0 1 PLEKHM2 chr1:16059024 5'GT 16059024 Upstream 22bp 21046 chr21 14410694 14410694 1 + G T UCEC 14410695 + 14410675 14410715 41 CAAGCCTGGAAGCTGGAGAGGATGATGAAGAAGACGACAAT CAAGCCTGGAAGCTGGAGATGATGATGAAGAAGACGACAAT < 41bp 0.460066356567081 0.738251780277294 NA NA prediction 0.476503560554588 Functional Gain - ANKRD30BP2 ENSG00000224309 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr21:14410695 chr21:14410694 . . 0 20 hm7G_associated_SNPs_22751 0 0 0 1 1 ANKRD30BP2 chr21:14410745 5'GT 14410745 Upstream 52bp 21047 chr3 73016867 73016867 1 + G T HNSC 73016868 + 73016848 73016888 41 CACTCTATGAAGCAATACGGGATGTAAGTGTGCCCTTGCTG CACTCTATGAAGCAATACGTGATGTAAGTGTGCCCTTGCTG < 41bp 0.638966264796105 0.877195201409471 NA NA prediction 0.476457873226731 Functional Gain - GXYLT2 ENSG00000172986 CDS Human protein_coding chr3:73016868 chr3:73016867 synonymous SNV . 0 20 hm7G_associated_SNPs_22754 0 0 1 0 1 GXYLT2 chr3:73016870 5'GT 73016870 Upstream 4bp 21048 chr10 118306857 118306857 1 + G T ACC 118306858 + 118306838 118306878 41 TTCAGTGATGACTCCCCATGGTCAGGAATTACGGAAAGACC TTCAGTGATGACTCCCCATTGTCAGGAATTACGGAAAGACC < 41bp 0.412336360357721 0.73820959802115 NA NA prediction 0.476419196042301 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306858 chr10:118306857 nonsynonymous SNV 0.866 5 20 hm7G_associated_SNPs_22757 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 52bp 21049 chr2 153471483 153471483 1 + G T UCEC 153471484 + 153471464 153471504 41 AAGAATGCTGCCTTGGAGAGGGTGGAAGAACTGGAAGAAAA AAGAATGCTGCCTTGGAGATGGTGGAAGAACTGGAAGAAAA < 41bp 0.41532116784893 0.73819419618546 NA NA prediction 0.47638839237092 Functional Gain - FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153471484 chr2:153471483 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_22758 0 0 1 0 1 FMNL2 chr2:153471514 5'GT 153471514 Upstream 32bp 21050 chr3 10979991 10979991 1 + G T UCEC 10979992 + 10979972 10980012 41 AAAATGCGGGGCAAGCTTGGGGTGAGCCCACGGATGGTGAC AAAATGCGGGGCAAGCTTGTGGTGAGCCCACGGATGGTGAC < 41bp 0.635913412454174 0.874107249660529 NA NA prediction 0.47638767441271 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10979992 chr3:10979991 nonsynonymous SNV 0.957 1 20 hm7G_associated_SNPs_22759 0 0 0 0 1 SLC6A11 chr3:10979936 3'AG 10979936 Downstream 56bp 21051 chr11 117058144 117058144 1 + G T UCEC 117058145 + 117058125 117058165 41 TGGCAGTTCCCCTTATGAGGGTTACAACTATGGCTCCTTTG TGGCAGTTCCCCTTATGAGTGTTACAACTATGGCTCCTTTG < 41bp 0.396774771442805 0.738116384107804 NA NA prediction 0.476232768215609 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117058145 chr11:117058144 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_22766 0 0 1 0 2 SIDT2 chr11:117058094 3'AG 117058094 Downstream 51bp 21052 chr11 117058144 117058144 1 + G T UCEC 117058145 + 117058125 117058165 41 TGGCAGTTCCCCTTATGAGGGTTACAACTATGGCTCCTTTG TGGCAGTTCCCCTTATGAGTGTTACAACTATGGCTCCTTTG < 41bp 0.396774771442805 0.738116384107804 NA NA prediction 0.476232768215609 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117058145 chr11:117058144 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_22766 0 0 1 0 2 SIDT2 chr11:117058165 5'GT 117058165 Upstream 22bp 21053 chr17 21206509 21206509 1 + G T LUAD 21206510 + 21206490 21206530 41 GCCAGATCGTGCGGGCCCTGGAGCATCTGCACAGCAAGCTG GCCAGATCGTGCGGGCCCTTGAGCATCTGCACAGCAAGCTG < 41bp 0.379249362483653 0.73809653943901 NA NA prediction 0.476193078878019 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21206510 chr17:21206509 synonymous SNV . 0 20 hm7G_associated_SNPs_22768 0 0 1 0 2 MAP2K3 chr17:21206495 3'AG 21206495 Downstream 15bp 21054 chr17 21206509 21206509 1 + G T LUAD 21206510 + 21206490 21206530 41 GCCAGATCGTGCGGGCCCTGGAGCATCTGCACAGCAAGCTG GCCAGATCGTGCGGGCCCTTGAGCATCTGCACAGCAAGCTG < 41bp 0.379249362483653 0.73809653943901 NA NA prediction 0.476193078878019 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21206510 chr17:21206509 synonymous SNV . 0 20 hm7G_associated_SNPs_22768 0 0 1 0 2 MAP2K3 chr17:21206546 5'GT 21206546 Upstream 38bp 21055 chr5 180482998 180482998 1 + G T LUSC 180482999 + 180482979 180483019 41 GTTGCTTCAGACTGGAGACGGGCTGAAGGCCAGGCTGGTGA GTTGCTTCAGACTGGAGACTGGCTGAAGGCCAGGCTGGTGA < 41bp 0.649839196710616 0.887935440017513 NA NA prediction 0.476192486613794 Functional Gain - BTNL9 ENSG00000165810 CDS Human protein_coding chr5:180482999 chr5:180482998 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_22769 0 0 1 0 2 BTNL9 chr5:180482989 3'AG 180482989 Downstream 10bp 21056 chr5 180482998 180482998 1 + G T LUSC 180482999 + 180482979 180483019 41 GTTGCTTCAGACTGGAGACGGGCTGAAGGCCAGGCTGGTGA GTTGCTTCAGACTGGAGACTGGCTGAAGGCCAGGCTGGTGA < 41bp 0.649839196710616 0.887935440017513 NA NA prediction 0.476192486613794 Functional Gain - BTNL9 ENSG00000165810 CDS Human protein_coding chr5:180482999 chr5:180482998 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_22769 0 0 1 0 2 BTNL9 chr5:180483015 5'GT 180483015 Upstream 18bp 21057 chr13 31897914 31897914 1 + G T UCEC 31897915 + 31897895 31897935 41 TTCAGCAGAGAAGCCGTCAGGAGACTTCTCGCCAGTAAATG TTCAGCAGAGAAGCCGTCATGAGACTTCTCGCCAGTAAATG < 41bp 0.405129746498934 0.738089158746046 NA NA prediction 0.476178317492091 Functional Gain - B3GLCT ENSG00000187676 CDS Human protein_coding chr13:31897915 chr13:31897914 nonsynonymous SNV 0.832 1 20 hm7G_associated_SNPs_22770 0 0 1 0 1 B3GLCT chr13:31897888 3'AG 31897888 Downstream 27bp 21058 chrX 153539311 153539311 1 + G T STAD 153539312 + 153539292 153539332 41 CTTTGATGTGAACCGCCTGGGACACAGTGGTGCATTGCCCG CTTTGATGTGAACCGCCTGTGACACAGTGGTGCATTGCCCG < 41bp 0.392575488676772 0.738081109966896 NA NA prediction 0.476162219933792 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153539312 chrX:153539311 stopgain 0.521 1 20 hm7G_associated_SNPs_22772 0 0 0 0 1 TKTL1 chrX:153539378 5'GT 153539378 Upstream 68bp 21059 chr16 57283687 57283687 1 + G T KIRP 57283688 + 57283668 57283708 41 CACTGTTGCAGATTTCTTTGGTAGAAAAATACATTGAAGAA CACTGTTGCAGATTTCTTTTGTAGAAAAATACATTGAAGAA < 41bp 0.632866323875783 0.870927588334629 NA NA prediction 0.476122528917693 Functional Gain - ARL2BP ENSG00000102931 CDS Human protein_coding chr16:57283688 chr16:57283687 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_22774 0 0 1 0 2 ARL2BP chr16:57283679 3'AG 57283679 Downstream 9bp 21060 chr16 57283687 57283687 1 + G T KIRP 57283688 + 57283668 57283708 41 CACTGTTGCAGATTTCTTTGGTAGAAAAATACATTGAAGAA CACTGTTGCAGATTTCTTTTGTAGAAAAATACATTGAAGAA < 41bp 0.632866323875783 0.870927588334629 NA NA prediction 0.476122528917693 Functional Gain - ARL2BP ENSG00000102931 CDS Human protein_coding chr16:57283688 chr16:57283687 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_22774 0 0 1 0 2 ARL2BP chr16:57283764 5'GT 57283764 Upstream 78bp 21061 chr22 17083060 17083060 1 + G T LUSC 17083061 + 17083041 17083081 41 CGCAGACAAAAGACCTCGGGGCCGGCCTCGCAAGGCGCTTC CGCAGACAAAAGACCTCGGTGCCGGCCTCGCAAGGCGCTTC < 41bp 0.431350536497427 0.73804953769213 NA NA prediction 0.47609907538426 Functional Gain - TPTEP1 ENSG00000100181 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17083061 chr22:17083060 . . 0 20 hm7G_associated_SNPs_22778 0 0 1 0 1 TPTEP1 chr22:17083105 5'GT 17083105 Upstream 46bp 21062 chr11 76826599 76826599 1 + G T CESC 76826600 + 76826580 76826620 41 TCCGCCTGCGCAACCCCTGGGGCGAGCGGGAGTGGAACGGG TCCGCCTGCGCAACCCCTGTGGCGAGCGGGAGTGGAACGGG < 41bp 0.660858381367353 0.898907649659442 NA NA prediction 0.476098536584179 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76826600 chr11:76826599 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22779 0 0 0 0 1 CAPN5 chr11:76826634 5'GT 76826634 Upstream 36bp 21063 chr4 129012245 129012245 1 + G T SARC 129012246 + 129012226 129012266 41 TATCCGAGGTTCCTTTAGAGGTCGAGGAAGAGGCCGAGGAC TATCCGAGGTTCCTTTAGATGTCGAGGAAGAGGCCGAGGAC < 41bp 0.628120506096488 0.866145352623081 NA NA prediction 0.476049693053185 Functional Gain - LARP1B ENSG00000138709 CDS Human protein_coding chr4:129012246 chr4:129012245 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_22782 0 0 1 0 2 LARP1B chr4:129012156 3'AG 129012156 Downstream 90bp 21064 chr4 129012245 129012245 1 + G T SARC 129012246 + 129012226 129012266 41 TATCCGAGGTTCCTTTAGAGGTCGAGGAAGAGGCCGAGGAC TATCCGAGGTTCCTTTAGATGTCGAGGAAGAGGCCGAGGAC < 41bp 0.628120506096488 0.866145352623081 NA NA prediction 0.476049693053185 Functional Gain - LARP1B ENSG00000138709 CDS Human protein_coding chr4:129012246 chr4:129012245 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_22782 0 0 1 0 2 LARP1B chr4:129012299 5'GT 129012299 Upstream 55bp 21065 chr4 38696435 38696435 1 + G T UCEC 38696436 + 38696416 38696456 41 GAATCCCCGGATACTCAAAGGAAGCGGAGGATACACAGATG GAATCCCCGGATACTCAAATGAAGCGGAGGATACACAGATG < 41bp 0.639929072732167 0.877926693842858 NA NA prediction 0.475995242221382 Functional Gain - KLF3 ENSG00000109787 CDS Human protein_coding chr4:38696436 chr4:38696435 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_22785 0 0 0 0 2 KLF3 chr4:38696367 3'AG 38696367 Downstream 69bp 21066 chr4 38696435 38696435 1 + G T UCEC 38696436 + 38696416 38696456 41 GAATCCCCGGATACTCAAAGGAAGCGGAGGATACACAGATG GAATCCCCGGATACTCAAATGAAGCGGAGGATACACAGATG < 41bp 0.639929072732167 0.877926693842858 NA NA prediction 0.475995242221382 Functional Gain - KLF3 ENSG00000109787 CDS Human protein_coding chr4:38696436 chr4:38696435 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_22785 0 0 0 0 2 KLF3 chr4:38696527 5'GT 38696527 Upstream 93bp 21067 chr19 43920355 43920355 1 + G T ESCA 43920356 + 43920336 43920376 41 AGTGGAGACTTGTGACAAAGGGGCACTTTGCCAGGAAACCA AGTGGAGACTTGTGACAAATGGGCACTTTGCCAGGAAACCA < 41bp 0.407155519771821 0.737988266554066 NA NA prediction 0.475976533108131 Functional Gain - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920356 chr19:43920355 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_22787 0 0 0 0 1 TEX101 chr19:43920394 5'GT 43920394 Upstream 40bp 21068 chr2 25360320 25360320 1 + G T rs10153701 25360321 + 25360301 25360341 41 CCCTCATCAGCATCGAGCTGGCTAACGAGGAGGTGGTGGTG CCCTCATCAGCATCGAGCTTGCTAACGAGGAGGTGGTGGTG < 41bp 0.656303940041773 0.894291890127633 NA NA prediction 0.47597590017172 Functional Gain - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25360321 chr2:25360320 synonymous SNV . 0 20 hm7G_associated_SNPs_22788 0 0 0 0 1 EFR3B chr2:25360371 5'GT 25360371 Upstream 52bp 21069 chr1 207992469 207992469 1 - C A TGCT 207992468 - 207992448 207992488 41 ACTCAGTGTATCGGGAGCCGGGAGATGGAGCTCTCAGCAGA ACTCAGTGTATCGGGAGCCTGGAGATGGAGCTCTCAGCAGA < 41bp 0.624719301187272 0.862678865210125 NA NA prediction 0.475919128045706 Functional Gain - C1orf132;LOC148696 ENSG00000203709 ncRNA_exonic Human lincRNA chr1:207992468 chr1:207992469 . . 0 20 hm7G_associated_SNPs_22791 0 0 0 0 1 C1orf132;LOC148696 chr1:207992491 3'AG 207992491 Downstream 23bp 21070 chr19 8436025 8436025 1 + G T ESCA 8436026 + 8436006 8436046 41 CCTACAAGGCGGGGTTTGGGGATCCCCACGGTAGGTGTTTC CCTACAAGGCGGGGTTTGGTGATCCCCACGGTAGGTGTTTC < 41bp 0.653559972658024 0.891508830381093 NA NA prediction 0.475897715446138 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436026 chr19:8436025 synonymous SNV . 0 20 hm7G_associated_SNPs_22792 0 0 0 0 2 ANGPTL4 chr19:8435940 3'AG 8435940 Downstream 86bp 21071 chr19 8436025 8436025 1 + G T ESCA 8436026 + 8436006 8436046 41 CCTACAAGGCGGGGTTTGGGGATCCCCACGGTAGGTGTTTC CCTACAAGGCGGGGTTTGGTGATCCCCACGGTAGGTGTTTC < 41bp 0.653559972658024 0.891508830381093 NA NA prediction 0.475897715446138 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436026 chr19:8436025 synonymous SNV . 0 20 hm7G_associated_SNPs_22792 0 0 0 0 2 ANGPTL4 chr19:8436035 5'GT 8436035 Upstream 11bp 21072 chr19 4318437 4318437 1 + G T LUAD 4318438 + 4318418 4318458 41 CTATGGGCGGGAAGGTGCAGGATATCAAGGCTCGCGAGAAA CTATGGGCGGGAAGGTGCATGATATCAAGGCTCGCGAGAAA < 41bp 0.655523662593668 0.893471881687476 NA NA prediction 0.475896438187617 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4318438 chr19:4318437 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_22793 0 0 0 0 1 FSD1 chr19:4318502 5'GT 4318502 Upstream 66bp 21073 chr11 9598729 9598729 1 + G T LUAD 9598730 + 9598710 9598750 41 ATATGCTCATGCAGTGCTTGGACAGCATTCTCATGTAGTTC ATATGCTCATGCAGTGCTTTGACAGCATTCTCATGTAGTTC < 41bp 0.422444186433541 0.737944343435741 NA NA prediction 0.475888686871482 Functional Gain - WEE1 ENSG00000166483 CDS Human protein_coding chr11:9598730 chr11:9598729 stopgain 1.000 1 20 hm7G_associated_SNPs_22794 0 0 1 0 2 WEE1 chr11:9598689 3'AG 9598689 Downstream 41bp 21074 chr11 9598729 9598729 1 + G T LUAD 9598730 + 9598710 9598750 41 ATATGCTCATGCAGTGCTTGGACAGCATTCTCATGTAGTTC ATATGCTCATGCAGTGCTTTGACAGCATTCTCATGTAGTTC < 41bp 0.422444186433541 0.737944343435741 NA NA prediction 0.475888686871482 Functional Gain - WEE1 ENSG00000166483 CDS Human protein_coding chr11:9598730 chr11:9598729 stopgain 1.000 1 20 hm7G_associated_SNPs_22794 0 0 1 0 2 WEE1 chr11:9598810 5'GT 9598810 Upstream 82bp 21075 chr20 30797914 30797914 1 + G T HNSC 30797915 + 30797895 30797935 41 ATCACTTCTTGGGCTCTCTGGCATTTGCAAAGCTGCTAAAC ATCACTTCTTGGGCTCTCTTGCATTTGCAAAGCTGCTAAAC < 41bp 0.386918350306038 0.737937239441113 NA NA prediction 0.475874478882225 Functional Gain - POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30797915 chr20:30797914 synonymous SNV . 0 20 hm7G_associated_SNPs_22795 0 0 1 0 2 POFUT1 chr20:30797874 3'AG 30797874 Downstream 41bp 21076 chr20 30797914 30797914 1 + G T HNSC 30797915 + 30797895 30797935 41 ATCACTTCTTGGGCTCTCTGGCATTTGCAAAGCTGCTAAAC ATCACTTCTTGGGCTCTCTTGCATTTGCAAAGCTGCTAAAC < 41bp 0.386918350306038 0.737937239441113 NA NA prediction 0.475874478882225 Functional Gain - POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30797915 chr20:30797914 synonymous SNV . 0 20 hm7G_associated_SNPs_22795 0 0 1 0 2 POFUT1 chr20:30797995 5'GT 30797995 Upstream 82bp 21077 chr8 75929298 75929298 1 + G T LIHC 75929299 + 75929279 75929319 41 TAGGTACGAATGTCCTGCTGGCTGTTTGGATAGTAAAGCTA TAGGTACGAATGTCCTGCTTGCTGTTTGGATAGTAAAGCTA < 41bp 0.642544293095302 0.880475937991454 NA NA prediction 0.475863289792305 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75929299 chr8:75929298 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_22797 0 0 0 0 2 CRISPLD1 chr8:75929282 3'AG 75929282 Downstream 17bp 21078 chr8 75929298 75929298 1 + G T LIHC 75929299 + 75929279 75929319 41 TAGGTACGAATGTCCTGCTGGCTGTTTGGATAGTAAAGCTA TAGGTACGAATGTCCTGCTTGCTGTTTGGATAGTAAAGCTA < 41bp 0.642544293095302 0.880475937991454 NA NA prediction 0.475863289792305 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75929299 chr8:75929298 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_22797 0 0 0 0 2 CRISPLD1 chr8:75929348 5'GT 75929348 Upstream 51bp 21079 chr3 172058919 172058919 1 + G T COAD 172058920 + 172058900 172058940 41 CAGCGAATCAGTGGGAAGTGGCCTACAGTGGGTCGGCTACC CAGCGAATCAGTGGGAAGTTGCCTACAGTGGGTCGGCTACC < 41bp 0.405726475746717 0.737931572908009 NA NA prediction 0.475863145816019 Functional Gain - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172058920 chr3:172058919 synonymous SNV . 0 20 hm7G_associated_SNPs_22798 0 0 1 0 1 FNDC3B chr3:172058903 3'AG 172058903 Downstream 17bp 21080 chr1 155034451 155034451 1 + G T LUSC 155034452 + 155034432 155034472 41 CGGTGGTGAGAAGCCCGAAGGTAACGGTGGGGGGAGAGAAG CGGTGGTGAGAAGCCCGAATGTAACGGTGGGGGGAGAGAAG < 41bp 0.424446643932148 0.737929672067241 NA NA prediction 0.475859344134482 Functional Gain - ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155034452 chr1:155034451 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_22800 0 0 0 0 2 ADAM15 chr1:155034380 3'AG 155034380 Downstream 72bp 21081 chr1 155034451 155034451 1 + G T LUSC 155034452 + 155034432 155034472 41 CGGTGGTGAGAAGCCCGAAGGTAACGGTGGGGGGAGAGAAG CGGTGGTGAGAAGCCCGAATGTAACGGTGGGGGGAGAGAAG < 41bp 0.424446643932148 0.737929672067241 NA NA prediction 0.475859344134482 Functional Gain - ADAM15 ENSG00000143537 CDS Human protein_coding chr1:155034452 chr1:155034451 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_22800 0 0 0 0 2 ADAM15 chr1:155034451 5'GT 155034451 Upstream 1bp 21082 chr15 45454097 45454097 1 + G T LGG 45454098 + 45454078 45454118 41 CCTGCACATCCGGGCAGCAGGGCCCTGGACCACTCGCCTCA CCTGCACATCCGGGCAGCATGGCCCTGGACCACTCGCCTCA < 41bp 0.386995781594443 0.737924901658461 NA NA prediction 0.475849803316923 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45454098 chr15:45454097 nonsynonymous SNV 0.951 4 20 hm7G_associated_SNPs_22801 0 0 0 0 1 DUOX1 chr15:45454168 5'GT 45454168 Upstream 72bp 21083 chr1 94964203 94964203 1 + G T HNSC 94964204 + 94964184 94964224 41 TTGTGGTCCAAATGGCTGCGGAAAGAGTTCACTTTTCCGTG TTGTGGTCCAAATGGCTGCTGAAAGAGTTCACTTTTCCGTG < 41bp 0.413645867435054 0.737922010930843 NA NA prediction 0.475844021861686 Functional Gain - ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964204 chr1:94964203 stopgain 0.994 1 20 hm7G_associated_SNPs_22802 0 0 1 0 2 ABCD3 chr1:94964158 3'AG 94964158 Downstream 46bp 21084 chr1 94964203 94964203 1 + G T HNSC 94964204 + 94964184 94964224 41 TTGTGGTCCAAATGGCTGCGGAAAGAGTTCACTTTTCCGTG TTGTGGTCCAAATGGCTGCTGAAAGAGTTCACTTTTCCGTG < 41bp 0.413645867435054 0.737922010930843 NA NA prediction 0.475844021861686 Functional Gain - ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94964204 chr1:94964203 stopgain 0.994 1 20 hm7G_associated_SNPs_22802 0 0 1 0 2 ABCD3 chr1:94964235 5'GT 94964235 Upstream 33bp 21085 chr10 82267056 82267056 1 + G T LUAD 82267057 + 82267037 82267077 41 GGTGCTGGTCCTGATGGTGGGCGTGGTGATGTTCACCCTGG GGTGCTGGTCCTGATGGTGTGCGTGGTGATGTTCACCCTGG < 41bp 0.393463583174317 0.737911478721459 NA NA prediction 0.475822957442918 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82267057 chr10:82267056 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22803 0 0 1 0 1 TSPAN14 chr10:82267130 5'GT 82267130 Upstream 75bp 21086 chr6 401690 401690 1 + G T LUAD 401691 + 401671 401711 41 GAGCAGGATCTACTGGGACGGGCCCCTGGCGCTGTGCAACG GAGCAGGATCTACTGGGACTGGCCCCTGGCGCTGTGCAACG < 41bp 0.39516707780064 0.737892092106424 NA NA prediction 0.475784184212849 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:401691 chr6:401690 nonsynonymous SNV 0.893 5 20 hm7G_associated_SNPs_22805 0 0 0 0 1 IRF4 chr6:401777 5'GT 401777 Upstream 88bp 21087 chr10 124187832 124187832 1 + G T UCEC 124187833 + 124187813 124187853 41 TCGAACCCTTGTATACAGAGGTATACATCAAGAGCTGGTGA TCGAACCCTTGTATACAGATGTATACATCAAGAGCTGGTGA < 41bp 0.630046628796649 0.867931087203186 NA NA prediction 0.475768916813074 Functional Gain - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124187833 chr10:124187832 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22807 0 0 1 0 1 PLEKHA1 chr10:124187792 3'AG 124187792 Downstream 41bp 21088 chr1 248039289 248039289 1 + G T LUSC 248039290 + 248039270 248039310 41 CAGGATGGAGAACCATGGAGGGATGTCCCCAACAACCCTGA CAGGATGGAGAACCATGGATGGATGTCCCCAACAACCCTGA < 41bp 0.407480977909085 0.737852786287014 NA NA prediction 0.475705572574027 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039290 chr1:248039289 nonsynonymous SNV 0.063 1 20 hm7G_associated_SNPs_22810 0 0 0 0 2 TRIM58 chr1:248039202 3'AG 248039202 Downstream 88bp 21089 chr1 248039289 248039289 1 + G T LUSC 248039290 + 248039270 248039310 41 CAGGATGGAGAACCATGGAGGGATGTCCCCAACAACCCTGA CAGGATGGAGAACCATGGATGGATGTCCCCAACAACCCTGA < 41bp 0.407480977909085 0.737852786287014 NA NA prediction 0.475705572574027 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248039290 chr1:248039289 nonsynonymous SNV 0.063 1 20 hm7G_associated_SNPs_22810 0 0 0 0 2 TRIM58 chr1:248039339 5'GT 248039339 Upstream 51bp 21090 chr19 13007234 13007234 1 + G T LUAD 13007235 + 13007215 13007255 41 CCTGGTGCATCCAGCCTGGGGGTAAGTGGCAGCCACTTTGG CCTGGTGCATCCAGCCTGGTGGTAAGTGGCAGCCACTTTGG < 41bp 0.655039901560471 0.892870920746698 NA NA prediction 0.475662038372453 Functional Gain - GCDH ENSG00000105607 CDS Human protein_coding chr19:13007235 chr19:13007234 nonsynonymous SNV 0.013 2 20 hm7G_associated_SNPs_22813 0 0 1 0 1 GCDH chr19:13007235 5'GT 13007235 Upstream 2bp 21091 chr18 63476961 63476961 1 + G T UCEC 63476962 + 63476942 63476982 41 TCACTCTGATGTTGATAAAGGAGATGGTTCCATCAAATACA TCACTCTGATGTTGATAAATGAGATGGTTCCATCAAATACA < 41bp 0.414961064747113 0.737813731322493 NA NA prediction 0.475627462644986 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63476962 chr18:63476961 stopgain 1.000 1 20 hm7G_associated_SNPs_22814 0 0 0 0 1 CDH7 chr18:63476940 3'AG 63476940 Downstream 22bp 21092 chr11 7059857 7059857 1 + G T LUSC 7059858 + 7059838 7059878 41 TTCTTTCTTTCCTGATTTTGGGCTGCTATTGTATTTGGAGG TTCTTTCTTTCCTGATTTTTGGCTGCTATTGTATTTGGAGG < 41bp 0.413593615791827 0.737804678057417 NA NA prediction 0.475609356114834 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7059858 chr11:7059857 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_22815 0 0 0 0 1 NLRP14 chr11:7059797 3'AG 7059797 Downstream 61bp 21093 chr12 537935 537935 1 + G T LUAD 537936 + 537916 537956 41 CTTTCCATGAGAATTGCAGGGAGCTAGAAGACAAGAAAAAG CTTTCCATGAGAATTGCAGTGAGCTAGAAGACAAGAAAAAG < 41bp 0.64233854123106 0.880134171882154 NA NA prediction 0.475591261302188 Functional Gain - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:537936 chr12:537935 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_22816 0 0 0 0 2 CCDC77 chr12:537935 3'AG 537935 Downstream 1bp 21094 chr12 537935 537935 1 + G T LUAD 537936 + 537916 537956 41 CTTTCCATGAGAATTGCAGGGAGCTAGAAGACAAGAAAAAG CTTTCCATGAGAATTGCAGTGAGCTAGAAGACAAGAAAAAG < 41bp 0.64233854123106 0.880134171882154 NA NA prediction 0.475591261302188 Functional Gain - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:537936 chr12:537935 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_22816 0 0 0 0 2 CCDC77 chr12:538031 5'GT 538031 Upstream 97bp 21095 chr6 71567860 71567860 1 + G T SARC 71567861 + 71567841 71567881 41 GCCCCCAAGGAGGAATGGTGGGACAAATGGGTGCACCCCAG GCCCCCAAGGAGGAATGGTTGGACAAATGGGTGCACCCCAG < 41bp 0.645953156820349 0.883729009328177 NA NA prediction 0.475551705015657 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71567861 chr6:71567860 synonymous SNV . 0 20 hm7G_associated_SNPs_22818 0 0 0 0 1 SMAP1 chr6:71567932 5'GT 71567932 Upstream 73bp 21096 chr9 103334819 103334819 1 + G T COAD 103334820 + 103334800 103334840 41 ATGTGAATCTGGCTACACTGGACAGCACTGTGAAAAGACAG ATGTGAATCTGGCTACACTTGACAGCACTGTGAAAAGACAG < 41bp 0.639558114672886 0.877330934263565 NA NA prediction 0.475545639181358 Functional Gain - MSANTD3-TMEFF1;TMEFF1 ENSG00000241697;ENSG00000251349 CDS Human other chr9:103334820 chr9:103334819 stopgain 1.000 1 20 hm7G_associated_SNPs_22819 0 0 1 0 1 MSANTD3-TMEFF1;TMEFF1 chr9:103334800 3'AG 103334800 Downstream 20bp 21097 chr6 4954182 4954182 1 + G T ACC 4954183 + 4954163 4954203 41 GCAACATGAAGATGGAGCTGGAGCAGGCCAACGAGAGGGAG GCAACATGAAGATGGAGCTTGAGCAGGCCAACGAGAGGGAG < 41bp 0.632042880458099 0.869814965167142 NA NA prediction 0.475544169418086 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4954183 chr6:4954182 synonymous SNV . 0 20 hm7G_associated_SNPs_22820 0 0 1 0 1 CDYL chr6:4954132 3'AG 4954132 Downstream 51bp 21098 chr17 41577398 41577398 1 + G T UCEC 41577399 + 41577379 41577419 41 AAAGGCGGGAACTCAAACAGGCCCAGCGGGAAGCTGAGATG AAAGGCGGGAACTCAAACATGCCCAGCGGGAAGCTGAGATG < 41bp 0.652312302856955 0.890083161218318 NA NA prediction 0.475541716722724 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41577399 chr17:41577398 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22821 0 0 1 0 2 DHX8 chr17:41577324 3'AG 41577324 Downstream 75bp 21099 chr17 41577398 41577398 1 + G T UCEC 41577399 + 41577379 41577419 41 AAAGGCGGGAACTCAAACAGGCCCAGCGGGAAGCTGAGATG AAAGGCGGGAACTCAAACATGCCCAGCGGGAAGCTGAGATG < 41bp 0.652312302856955 0.890083161218318 NA NA prediction 0.475541716722724 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41577399 chr17:41577398 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22821 0 0 1 0 2 DHX8 chr17:41577471 5'GT 41577471 Upstream 74bp 21100 chr17 36455378 36455378 1 + G T STAD 36455379 + 36455359 36455399 41 GCATATCATCTCTTTCAAAGGAGGGACTGATAGAGAGAACT GCATATCATCTCTTTCAAATGAGGGACTGATAGAGAGAACT < 41bp 0.645603185209383 0.88336750904108 NA NA prediction 0.475528647663394 Functional Gain - MRPL45 ENSG00000174100 CDS Human other chr17:36455379 chr17:36455378 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_22822 0 0 1 0 2 MRPL45 chr17:36455317 3'AG 36455317 Downstream 62bp 21101 chr17 36455378 36455378 1 + G T STAD 36455379 + 36455359 36455399 41 GCATATCATCTCTTTCAAAGGAGGGACTGATAGAGAGAACT GCATATCATCTCTTTCAAATGAGGGACTGATAGAGAGAACT < 41bp 0.645603185209383 0.88336750904108 NA NA prediction 0.475528647663394 Functional Gain - MRPL45 ENSG00000174100 CDS Human other chr17:36455379 chr17:36455378 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_22822 0 0 1 0 2 MRPL45 chr17:36455434 5'GT 36455434 Upstream 57bp 21102 chr5 176813071 176813071 1 + G T SARC 176813072 + 176813052 176813092 41 TGAGCACACCTGCCCCTGTGGGGAGGTCCTGGAGCGCCATG TGAGCACACCTGCCCCTGTTGGGAGGTCCTGGAGCGCCATG < 41bp 0.383196053832852 0.737749664780104 NA NA prediction 0.475499329560207 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176813072 chr5:176813071 nonsynonymous SNV 0.182 3 20 hm7G_associated_SNPs_22823 0 0 0 0 2 SLC34A1 chr5:176812988 3'AG 176812988 Downstream 84bp 21103 chr5 176813071 176813071 1 + G T SARC 176813072 + 176813052 176813092 41 TGAGCACACCTGCCCCTGTGGGGAGGTCCTGGAGCGCCATG TGAGCACACCTGCCCCTGTTGGGAGGTCCTGGAGCGCCATG < 41bp 0.383196053832852 0.737749664780104 NA NA prediction 0.475499329560207 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176813072 chr5:176813071 nonsynonymous SNV 0.182 3 20 hm7G_associated_SNPs_22823 0 0 0 0 2 SLC34A1 chr5:176813137 5'GT 176813137 Upstream 67bp 21104 chr13 113965058 113965058 1 + G T LUAD 113965059 + 113965039 113965079 41 AATCTATAACTGACATCAGGGCAGATATAGATAAAAAATAC AATCTATAACTGACATCAGTGCAGATATAGATAAAAAATAC < 41bp 0.411198024266354 0.737739008290543 NA NA prediction 0.475478016581086 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113965059 chr13:113965058 nonsynonymous SNV 0.275 0 20 hm7G_associated_SNPs_22824 0 0 1 0 1 LAMP1 chr13:113965024 3'AG 113965024 Downstream 35bp 21105 chr16 25228604 25228604 1 + G T LUAD 25228605 + 25228585 25228625 41 CGAGTGTCCTGGTACGAACGGTTTGTGCAGCCATGTCTGGT CGAGTGTCCTGGTACGAACTGTTTGTGCAGCCATGTCTGGT < 41bp 0.639980517793306 0.877700820657923 NA NA prediction 0.475440605729234 Functional Gain - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25228605 chr16:25228604 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_22826 0 0 0 0 1 AQP8 chr16:25228519 3'AG 25228519 Downstream 86bp 21106 chr10 72300887 72300887 1 + G T LUAD 72300888 + 72300868 72300908 41 AGCTGCTGGAGGCCCTGCGGGCCGCCCTCTCCAAGGACCCA AGCTGCTGGAGGCCCTGCGTGCCGCCCTCTCCAAGGACCCA < 41bp 0.381283269001181 0.737711735349233 NA NA prediction 0.475423470698465 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72300888 chr10:72300887 synonymous SNV . 0 20 hm7G_associated_SNPs_22827 0 0 0 0 1 PALD1 chr10:72300858 3'AG 72300858 Downstream 30bp 21107 chr21 30411818 30411818 1 + G T UCEC 30411819 + 30411799 30411839 41 TAGAGCAGTGCGGTTTAAAGGCTATCAGCAGCAAGACAGCC TAGAGCAGTGCGGTTTAAATGCTATCAGCAGCAAGACAGCC < 41bp 0.646356515949658 0.884050015717195 NA NA prediction 0.475386999535075 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30411819 chr21:30411818 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22829 0 0 1 0 2 USP16 chr21:30411802 3'AG 30411802 Downstream 17bp 21108 chr21 30411818 30411818 1 + G T UCEC 30411819 + 30411799 30411839 41 TAGAGCAGTGCGGTTTAAAGGCTATCAGCAGCAAGACAGCC TAGAGCAGTGCGGTTTAAATGCTATCAGCAGCAAGACAGCC < 41bp 0.646356515949658 0.884050015717195 NA NA prediction 0.475386999535075 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30411819 chr21:30411818 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22829 0 0 1 0 2 USP16 chr21:30411889 5'GT 30411889 Upstream 72bp 21109 chr19 41312488 41312488 1 + G T UCEC 41312489 + 41312469 41312509 41 GCGTGTTACCCAGGCAACGGGCTCGGGTACGTAAGGCACGT GCGTGTTACCCAGGCAACGTGCTCGGGTACGTAAGGCACGT < 41bp 0.65803703561021 0.89572406501162 NA NA prediction 0.475374058802819 Functional Gain - EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41312489 chr19:41312488 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22831 0 0 1 0 2 EGLN2 chr19:41312460 3'AG 41312460 Downstream 29bp 21110 chr19 41312488 41312488 1 + G T UCEC 41312489 + 41312469 41312509 41 GCGTGTTACCCAGGCAACGGGCTCGGGTACGTAAGGCACGT GCGTGTTACCCAGGCAACGTGCTCGGGTACGTAAGGCACGT < 41bp 0.65803703561021 0.89572406501162 NA NA prediction 0.475374058802819 Functional Gain - EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41312489 chr19:41312488 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22831 0 0 1 0 2 EGLN2 chr19:41312579 5'GT 41312579 Upstream 92bp 21111 chr9 128099865 128099865 1 + G T PAAD 128099866 + 128099846 128099886 41 GAGTAAGGACTCCTCAAGAGGAGAGGTATGGGACATAGGCC GAGTAAGGACTCCTCAAGATGAGAGGTATGGGACATAGGCC < 41bp 0.410314610318953 0.737682365962643 NA NA prediction 0.475364731925286 Functional Gain - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128099866 chr9:128099865 stopgain 1.000 1 20 hm7G_associated_SNPs_22832 0 0 1 0 1 GAPVD1 chr9:128099870 5'GT 128099870 Upstream 6bp 21112 chr12 99093316 99093316 1 + G T UCEC 99093317 + 99093297 99093337 41 TGGTCTGCTGATGGTGCAAGGATAATGGTGGCAGCAAAAAA TGGTCTGCTGATGGTGCAATGATAATGGTGGCAGCAAAAAA < 41bp 0.411566488483067 0.737675347364894 NA NA prediction 0.475350694729787 Functional Gain - APAF1 ENSG00000120868 CDS Human protein_coding chr12:99093317 chr12:99093316 nonsynonymous SNV 0.889 0 20 hm7G_associated_SNPs_22834 0 0 1 0 1 APAF1 chr12:99093347 5'GT 99093347 Upstream 32bp 21113 chr10 18789832 18789832 1 + G T STAD 18789833 + 18789813 18789853 41 GTCAAACTAGAAAACATGAGGCTGCAGCATGAACAGAGAGC GTCAAACTAGAAAACATGATGCTGCAGCATGAACAGAGAGC < 41bp 0.438246646783496 0.737662370752912 NA NA prediction 0.475324741505825 Functional Gain - CACNB2 ENSG00000165995 CDS Human protein_coding chr10:18789833 chr10:18789832 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22837 0 0 0 0 2 CACNB2 chr10:18789741 3'AG 18789741 Downstream 92bp 21114 chr10 18789832 18789832 1 + G T STAD 18789833 + 18789813 18789853 41 GTCAAACTAGAAAACATGAGGCTGCAGCATGAACAGAGAGC GTCAAACTAGAAAACATGATGCTGCAGCATGAACAGAGAGC < 41bp 0.438246646783496 0.737662370752912 NA NA prediction 0.475324741505825 Functional Gain - CACNB2 ENSG00000165995 CDS Human protein_coding chr10:18789833 chr10:18789832 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22837 0 0 0 0 2 CACNB2 chr10:18789877 5'GT 18789877 Upstream 46bp 21115 chr12 54925286 54925286 1 + G T LGG 54925287 + 54925267 54925307 41 GACTACAGAAGCTGGTGGTGGAAAACATGGACATACTTGTT GACTACAGAAGCTGGTGGTTGAAAACATGGACATACTTGTT < 41bp 0.6407085088931 0.878339317135123 NA NA prediction 0.475261616484047 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54925287 chr12:54925286 synonymous SNV . 0 20 hm7G_associated_SNPs_22838 0 0 1 0 2 NCKAP1L chr12:54925275 3'AG 54925275 Downstream 12bp 21116 chr12 54925286 54925286 1 + G T LGG 54925287 + 54925267 54925307 41 GACTACAGAAGCTGGTGGTGGAAAACATGGACATACTTGTT GACTACAGAAGCTGGTGGTTGAAAACATGGACATACTTGTT < 41bp 0.6407085088931 0.878339317135123 NA NA prediction 0.475261616484047 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54925287 chr12:54925286 synonymous SNV . 0 20 hm7G_associated_SNPs_22838 0 0 1 0 2 NCKAP1L chr12:54925368 5'GT 54925368 Upstream 83bp 21117 chr15 25222051 25222051 1 + G T BRCA 25222052 + 25222032 25222072 41 TGCTCGGGTACCACTTGCTGGAGCTGCTGGAGGCCCTGGGG TGCTCGGGTACCACTTGCTTGAGCTGCTGGAGGCCCTGGGG < 41bp 0.390173884165235 0.737629969015664 NA NA prediction 0.475259938031328 Functional Gain - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25222052 chr15:25222051 stopgain 1.000 1 20 hm7G_associated_SNPs_22839 0 0 1 0 1 SNRPN chr15:25222024 3'AG 25222024 Downstream 28bp 21118 chr15 91453878 91453878 1 + G T UCEC 91453879 + 91453859 91453899 41 ACGATGCCATCACTGGCACGGCCAAGGAGGCTGTGGTGGTG ACGATGCCATCACTGGCACTGCCAAGGAGGCTGTGGTGGTG < 41bp 0.659590716787846 0.897217914576834 NA NA prediction 0.475254395577977 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91453879 chr15:91453878 synonymous SNV . 0 20 hm7G_associated_SNPs_22840 0 0 1 0 1 MAN2A2 chr15:91453913 5'GT 91453913 Upstream 36bp 21119 chr19 45164589 45164589 1 + G T UCEC 45164590 + 45164570 45164610 41 GCCAGCGCCTCAGCTAATGGGGTAAGTGCAGTGTTGGAGCT GCCAGCGCCTCAGCTAATGTGGTAAGTGCAGTGTTGGAGCT < 41bp 0.409831171261283 0.737625746851409 NA NA prediction 0.475251493702819 Functional Gain - PVR ENSG00000073008 CDS Human protein_coding chr19:45164590 chr19:45164589 nonsynonymous SNV 0.011 2 20 hm7G_associated_SNPs_22841 0 0 1 0 2 PVR chr19:45164559 3'AG 45164559 Downstream 31bp 21120 chr19 45164589 45164589 1 + G T UCEC 45164590 + 45164570 45164610 41 GCCAGCGCCTCAGCTAATGGGGTAAGTGCAGTGTTGGAGCT GCCAGCGCCTCAGCTAATGTGGTAAGTGCAGTGTTGGAGCT < 41bp 0.409831171261283 0.737625746851409 NA NA prediction 0.475251493702819 Functional Gain - PVR ENSG00000073008 CDS Human protein_coding chr19:45164590 chr19:45164589 nonsynonymous SNV 0.011 2 20 hm7G_associated_SNPs_22841 0 0 1 0 2 PVR chr19:45164590 5'GT 45164590 Upstream 2bp 21121 chr19 4318422 4318422 1 + G T COAD 4318423 + 4318403 4318443 41 CCGTGGAGTGGGACGCTATGGGCGGGAAGGTGCAGGATATC CCGTGGAGTGGGACGCTATTGGCGGGAAGGTGCAGGATATC < 41bp 0.660833026357058 0.898437979708958 NA NA prediction 0.4752099067038 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4318423 chr19:4318422 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22844 0 0 0 0 1 FSD1 chr19:4318502 5'GT 4318502 Upstream 81bp 21122 chr16 74419285 74419285 1 + G T UCEC 74419286 + 74419266 74419306 41 GTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGA GTCTCGAAATGGACATGATTGATCCACGGATGTACAGCAGA < 41bp 0.635464432099238 0.87306705528007 NA NA prediction 0.475205246361664 Functional Gain - NPIPB15 ENSG00000196436 CDS Human protein_coding chr16:74419286 chr16:74419285 stopgain 0.052 0 20 hm7G_associated_SNPs_22845 0 0 0 0 2 NPIPB15 chr16:74419240 3'AG 74419240 Downstream 46bp 21123 chr16 74419285 74419285 1 + G T UCEC 74419286 + 74419266 74419306 41 GTCTCGAAATGGACATGATGGATCCACGGATGTACAGCAGA GTCTCGAAATGGACATGATTGATCCACGGATGTACAGCAGA < 41bp 0.635464432099238 0.87306705528007 NA NA prediction 0.475205246361664 Functional Gain - NPIPB15 ENSG00000196436 CDS Human protein_coding chr16:74419286 chr16:74419285 stopgain 0.052 0 20 hm7G_associated_SNPs_22845 0 0 0 0 2 NPIPB15 chr16:74419339 5'GT 74419339 Upstream 55bp 21124 chr3 157841731 157841731 1 + G T LUAD 157841732 + 157841712 157841752 41 AAGTCGTTCAAGGGGTCGAGGGAAATCCTATAGAGTTCAGA AAGTCGTTCAAGGGGTCGATGGAAATCCTATAGAGTTCAGA < 41bp 0.415376454587206 0.737600196156726 NA NA prediction 0.475200392313452 Functional Gain - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841732 chr3:157841731 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22846 0 0 1 0 2 RSRC1 chr3:157841655 3'AG 157841655 Downstream 77bp 21125 chr3 157841731 157841731 1 + G T LUAD 157841732 + 157841712 157841752 41 AAGTCGTTCAAGGGGTCGAGGGAAATCCTATAGAGTTCAGA AAGTCGTTCAAGGGGTCGATGGAAATCCTATAGAGTTCAGA < 41bp 0.415376454587206 0.737600196156726 NA NA prediction 0.475200392313452 Functional Gain - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:157841732 chr3:157841731 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22846 0 0 1 0 2 RSRC1 chr3:157841780 5'GT 157841780 Upstream 50bp 21126 chr11 65617686 65617686 1 + G T CESC 65617687 + 65617667 65617707 41 AGCTACAGAAATTGGGCGAGGGGGACAGCTCTGTCACTCGG AGCTACAGAAATTGGGCGATGGGGACAGCTCTGTCACTCGG < 41bp 0.653349311325928 0.890941315368198 NA NA prediction 0.47518400808454 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65617687 chr11:65617686 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_22847 0 0 0 1 1 SNX32 chr11:65617621 3'AG 65617621 Downstream 66bp 21127 chr17 53851197 53851197 1 + G T LUSC 53851198 + 53851178 53851218 41 GAGAGGTCTGGGGTGATCCGGGTGAAGCAATACAAGCAGAG GAGAGGTCTGGGGTGATCCTGGTGAAGCAATACAAGCAGAG < 41bp 0.655072252325824 0.892640505848044 NA NA prediction 0.475136507044439 Functional Gain - PCTP ENSG00000141179 CDS Human protein_coding chr17:53851198 chr17:53851197 nonsynonymous SNV 0.935 5 20 hm7G_associated_SNPs_22849 0 0 1 1 1 PCTP chr17:53851256 5'GT 53851256 Upstream 60bp 21128 chr11 60687196 60687196 1 + G T LUSC 60687197 + 60687177 60687217 41 CAGCATCAGTTCACCATGGGGAAAGCATGTGTTCAAAGCCA CAGCATCAGTTCACCATGGTGAAAGCATGTGTTCAAAGCCA < 41bp 0.403775165878209 0.737536653096501 NA NA prediction 0.475073306193002 Functional Gain - TMEM109 ENSG00000110108 CDS Human antisense chr11:60687197 chr11:60687196 stopgain 0.014 0 20 hm7G_associated_SNPs_22852 0 0 1 0 1 TMEM109 chr11:60687158 3'AG 60687158 Downstream 39bp 21129 chr13 103292688 103292688 1 + G T UCEC 103292689 + 103292669 103292709 41 AAACCTGGTCAAATTCGAAGGCATTTTATTGAGGTTCCTGA AAACCTGGTCAAATTCGAATGCATTTTATTGAGGTTCCTGA < 41bp 0.402399978403803 0.73752280090055 NA NA prediction 0.475045601801099 Functional Gain - TPP2 ENSG00000134900 CDS Human protein_coding chr13:103292689 chr13:103292688 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22853 0 0 0 0 1 TPP2 chr13:103292726 5'GT 103292726 Upstream 39bp 21130 chr17 27370332 27370332 1 + G T GBM 27370333 + 27370313 27370353 41 TACCACCTGGCCAAACACAGGAAGAGGATCCTCCTGCTGGA TACCACCTGGCCAAACACATGAAGAGGATCCTCCTGCTGGA < 41bp 0.634511278230801 0.871991695908054 NA NA prediction 0.474960835354505 Functional Gain - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27370333 chr17:27370332 nonsynonymous SNV 0.710 1 20 hm7G_associated_SNPs_22855 0 0 1 0 1 PIPOX chr17:27370357 5'GT 27370357 Upstream 26bp 21131 chr1 231125862 231125862 1 + G T LGG 231125863 + 231125843 231125883 41 CTTTGACTATCAGATCCATGGAAAACTCTGCATATTTTGTT CTTTGACTATCAGATCCATTGAAAACTCTGCATATTTTGTT < 41bp 0.409637299736524 0.737478877998342 NA NA prediction 0.474957755996683 Functional Gain - ARV1 ENSG00000173409 CDS Human protein_coding chr1:231125863 chr1:231125862 stopgain 0.998 1 20 hm7G_associated_SNPs_22856 0 0 1 0 1 ARV1 chr1:231125856 3'AG 231125856 Downstream 7bp 21132 chr1 89848392 89848392 1 + G T UCEC 89848393 + 89848373 89848413 41 TACATGGAAACAAAGGAAAGGATTGAACAGGACTATTGGCA TACATGGAAACAAAGGAAATGATTGAACAGGACTATTGGCA < 41bp 0.636601373542141 0.87407756482204 NA NA prediction 0.474952382559798 Functional Gain - GBP6 ENSG00000183347 CDS Human protein_coding chr1:89848393 chr1:89848392 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_22857 0 0 0 0 1 GBP6 chr1:89848435 5'GT 89848435 Upstream 44bp 21133 chr15 51233906 51233906 1 + G T SARC 51233907 + 51233887 51233927 41 TCCAACAGGATCCTACTCTGGCTCTTCAACACCAGATGACA TCCAACAGGATCCTACTCTTGCTCTTCAACACCAGATGACA < 41bp 0.39572375323788 0.737471380340584 NA NA prediction 0.474942760681169 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51233907 chr15:51233906 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_22859 0 0 1 2 3 AP4E1 chr15:51233863 3'AG 51233863 Downstream 44bp 21134 chr15 51233906 51233906 1 + G T SARC 51233907 + 51233887 51233927 41 TCCAACAGGATCCTACTCTGGCTCTTCAACACCAGATGACA TCCAACAGGATCCTACTCTTGCTCTTCAACACCAGATGACA < 41bp 0.39572375323788 0.737471380340584 NA NA prediction 0.474942760681169 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51233907 chr15:51233906 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_22859 0 0 1 2 3 AP4E1 chr15:51233895 3'AG 51233895 Downstream 12bp 21135 chr15 51233906 51233906 1 + G T SARC 51233907 + 51233887 51233927 41 TCCAACAGGATCCTACTCTGGCTCTTCAACACCAGATGACA TCCAACAGGATCCTACTCTTGCTCTTCAACACCAGATGACA < 41bp 0.39572375323788 0.737471380340584 NA NA prediction 0.474942760681169 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51233907 chr15:51233906 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_22859 0 0 1 2 3 AP4E1 chr15:51233972 5'GT 51233972 Upstream 67bp 21136 chr2 234975188 234975188 1 + G T LUAD 234975189 + 234975169 234975209 41 TTCTTTAGATGATTTTTGGGGACATGTTGGGATCTCATAAA TTCTTTAGATGATTTTTGGTGACATGTTGGGATCTCATAAA < 41bp 0.426022198447134 0.737464127792738 NA NA prediction 0.474928255585476 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234975189 chr2:234975188 synonymous SNV . 0 20 hm7G_associated_SNPs_22863 0 0 0 0 2 SPP2 chr2:234975177 3'AG 234975177 Downstream 12bp 21137 chr2 234975188 234975188 1 + G T LUAD 234975189 + 234975169 234975209 41 TTCTTTAGATGATTTTTGGGGACATGTTGGGATCTCATAAA TTCTTTAGATGATTTTTGGTGACATGTTGGGATCTCATAAA < 41bp 0.426022198447134 0.737464127792738 NA NA prediction 0.474928255585476 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234975189 chr2:234975188 synonymous SNV . 0 20 hm7G_associated_SNPs_22863 0 0 0 0 2 SPP2 chr2:234975231 5'GT 234975231 Upstream 44bp 21138 chr19 36611662 36611662 1 + G T LUSC 36611663 + 36611643 36611683 41 AGTATGAGGACGTGTCCCGGGTGGAGAAGTACACGATCTCA AGTATGAGGACGTGTCCCGTGTGGAGAAGTACACGATCTCA < 41bp 0.6501948148674 0.8876222152736 NA NA prediction 0.474854800812399 Functional Gain - TBCB ENSG00000105254 CDS Human protein_coding chr19:36611663 chr19:36611662 synonymous SNV . 0 20 hm7G_associated_SNPs_22865 0 0 1 0 2 TBCB chr19:36611612 3'AG 36611612 Downstream 51bp 21139 chr19 36611662 36611662 1 + G T LUSC 36611663 + 36611643 36611683 41 AGTATGAGGACGTGTCCCGGGTGGAGAAGTACACGATCTCA AGTATGAGGACGTGTCCCGTGTGGAGAAGTACACGATCTCA < 41bp 0.6501948148674 0.8876222152736 NA NA prediction 0.474854800812399 Functional Gain - TBCB ENSG00000105254 CDS Human protein_coding chr19:36611663 chr19:36611662 synonymous SNV . 0 20 hm7G_associated_SNPs_22865 0 0 1 0 2 TBCB chr19:36611708 5'GT 36611708 Upstream 47bp 21140 chr5 158696032 158696032 1 + G T PAAD 158696033 + 158696013 158696053 41 GTTTCTCAAGACCCTTACAGGAGTTCTTCCAGAACGCCAAA GTTTCTCAAGACCCTTACATGAGTTCTTCCAGAACGCCAAA < 41bp 0.41997364288792 0.737409037675181 NA NA prediction 0.474818075350361 Functional Gain - UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158696033 chr5:158696032 stopgain 0.998 1 20 hm7G_associated_SNPs_22869 0 0 1 0 1 UBLCP1 chr5:158696077 5'GT 158696077 Upstream 46bp 21141 chr2 171686090 171686090 1 + G T HNSC 171686091 + 171686071 171686111 41 TCCTGTGAAAACAGCGACCGGGATGCCCGCTTCCGGCGCAC TCCTGTGAAAACAGCGACCTGGATGCCCGCTTCCGGCGCAC < 41bp 0.661348603570699 0.898750661724545 NA NA prediction 0.474804116307692 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171686091 chr2:171686090 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_22870 0 0 0 0 1 GAD1 chr2:171686143 5'GT 171686143 Upstream 54bp 21142 chr1 180907788 180907788 1 + G T LGG 180907789 + 180907769 180907809 41 AGGAGTCAGAGTCCAGCAAGGAATCAGAGGGAAGCCTGCAG AGGAGTCAGAGTCCAGCAATGAATCAGAGGGAAGCCTGCAG < 41bp 0.657454551720932 0.894850798488931 NA NA prediction 0.474792493535998 Functional Gain - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180907789 chr1:180907788 nonsynonymous SNV 0.455 1 20 hm7G_associated_SNPs_22871 0 0 0 0 2 KIAA1614 chr1:180907691 3'AG 180907691 Downstream 98bp 21143 chr1 180907788 180907788 1 + G T LGG 180907789 + 180907769 180907809 41 AGGAGTCAGAGTCCAGCAAGGAATCAGAGGGAAGCCTGCAG AGGAGTCAGAGTCCAGCAATGAATCAGAGGGAAGCCTGCAG < 41bp 0.657454551720932 0.894850798488931 NA NA prediction 0.474792493535998 Functional Gain - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180907789 chr1:180907788 nonsynonymous SNV 0.455 1 20 hm7G_associated_SNPs_22871 0 0 0 0 2 KIAA1614 chr1:180907847 5'GT 180907847 Upstream 60bp 21144 chr6 36103575 36103575 1 + G T KIRC 36103576 + 36103556 36103596 41 CGGATCTGCAGAAGATCATGGGGATGGAGTTCAGTGAGGAG CGGATCTGCAGAAGATCATTGGGATGGAGTTCAGTGAGGAG < 41bp 0.658720497293043 0.896077614030097 NA NA prediction 0.474714233474109 Functional Gain - MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36103576 chr6:36103575 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_22875 0 0 1 0 2 MAPK13 chr6:36103530 3'AG 36103530 Downstream 46bp 21145 chr6 36103575 36103575 1 + G T KIRC 36103576 + 36103556 36103596 41 CGGATCTGCAGAAGATCATGGGGATGGAGTTCAGTGAGGAG CGGATCTGCAGAAGATCATTGGGATGGAGTTCAGTGAGGAG < 41bp 0.658720497293043 0.896077614030097 NA NA prediction 0.474714233474109 Functional Gain - MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36103576 chr6:36103575 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_22875 0 0 1 0 2 MAPK13 chr6:36103638 5'GT 36103638 Upstream 64bp 21146 chr11 48146645 48146645 1 + G T LUAD 48146646 + 48146626 48146666 41 CACGGAAGTCCTGCTTGTCGGGTTAGAGCCTGGCACCCGAT CACGGAAGTCCTGCTTGTCTGGTTAGAGCCTGGCACCCGAT < 41bp 0.390896268760386 0.737352025966857 NA NA prediction 0.474704051933714 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48146646 chr11:48146645 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_22876 0 0 0 0 1 PTPRJ chr11:48146738 5'GT 48146738 Upstream 94bp 21147 chr14 65560456 65560456 1 - C A LUAD 65560455 - 65560435 65560475 41 ACAGCTTTCACAGTTTGCGGGACTCAGTCCCATCACTCCAA ACAGCTTTCACAGTTTGCGTGACTCAGTCCCATCACTCCAA < 41bp 0.409052613348776 0.737346617735038 NA NA prediction 0.474693235470075 Functional Gain - MAX ENSG00000125952 CDS Human protein_coding chr14:65560455 chr14:65560456 synonymous SNV . 0 20 hm7G_associated_SNPs_22877 0 0 1 0 2 MAX chr14:65560426 5'GT 65560426 Upstream 31bp 21148 chr14 65560456 65560456 1 - C A LUAD 65560455 - 65560435 65560475 41 ACAGCTTTCACAGTTTGCGGGACTCAGTCCCATCACTCCAA ACAGCTTTCACAGTTTGCGTGACTCAGTCCCATCACTCCAA < 41bp 0.409052613348776 0.737346617735038 NA NA prediction 0.474693235470075 Functional Gain - MAX ENSG00000125952 CDS Human protein_coding chr14:65560455 chr14:65560456 synonymous SNV . 0 20 hm7G_associated_SNPs_22877 0 0 1 0 2 MAX chr14:65560533 3'AG 65560533 Downstream 78bp 21149 chr7 133848242 133848242 1 + G T CESC 133848243 + 133848223 133848263 41 TCAGATAAGCAGCCTCCAAGGCTTAGAGAATCATGACCTCC TCAGATAAGCAGCCTCCAATGCTTAGAGAATCATGACCTCC < 41bp 0.654578940036216 0.891920196894718 NA NA prediction 0.474682513717004 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133848243 chr7:133848242 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_22878 0 0 0 0 2 LRGUK chr7:133848149 3'AG 133848149 Downstream 94bp 21150 chr7 133848242 133848242 1 + G T CESC 133848243 + 133848223 133848263 41 TCAGATAAGCAGCCTCCAAGGCTTAGAGAATCATGACCTCC TCAGATAAGCAGCCTCCAATGCTTAGAGAATCATGACCTCC < 41bp 0.654578940036216 0.891920196894718 NA NA prediction 0.474682513717004 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133848243 chr7:133848242 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_22878 0 0 0 0 2 LRGUK chr7:133848292 5'GT 133848292 Upstream 51bp 21151 chr11 82956580 82956580 1 + G T rs77693567 82956581 + 82956561 82956601 41 TAGAATTGAGACACCTCCTGGAAATTGCCGAGAGCAACTAT TAGAATTGAGACACCTCCTTGAAATTGCCGAGAGCAACTAT < 41bp 0.427197478405457 0.737335216068072 NA NA prediction 0.474670432136144 Functional Gain - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82956581 chr11:82956580 synonymous SNV . 0 20 hm7G_associated_SNPs_22879 0 0 1 0 2 ANKRD42 chr11:82956540 3'AG 82956540 Downstream 41bp 21152 chr11 82956580 82956580 1 + G T rs77693567 82956581 + 82956561 82956601 41 TAGAATTGAGACACCTCCTGGAAATTGCCGAGAGCAACTAT TAGAATTGAGACACCTCCTTGAAATTGCCGAGAGCAACTAT < 41bp 0.427197478405457 0.737335216068072 NA NA prediction 0.474670432136144 Functional Gain - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82956581 chr11:82956580 synonymous SNV . 0 20 hm7G_associated_SNPs_22879 0 0 1 0 2 ANKRD42 chr11:82956666 5'GT 82956666 Upstream 87bp 21153 chr19 3728689 3728689 1 + G T UCEC 3728690 + 3728670 3728710 41 ATCTGACGTGGTACCTGGAGGGCCGGCGGAGGGCAGGCTAC ATCTGACGTGGTACCTGGATGGCCGGCGGAGGGCAGGCTAC < 41bp 0.659142985355441 0.896433033530565 NA NA prediction 0.474580096350248 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3728690 chr19:3728689 nonsynonymous SNV 0.007 4 20 hm7G_associated_SNPs_22881 0 0 0 0 2 TJP3 chr19:3728602 3'AG 3728602 Downstream 88bp 21154 chr19 3728689 3728689 1 + G T UCEC 3728690 + 3728670 3728710 41 ATCTGACGTGGTACCTGGAGGGCCGGCGGAGGGCAGGCTAC ATCTGACGTGGTACCTGGATGGCCGGCGGAGGGCAGGCTAC < 41bp 0.659142985355441 0.896433033530565 NA NA prediction 0.474580096350248 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3728690 chr19:3728689 nonsynonymous SNV 0.007 4 20 hm7G_associated_SNPs_22881 0 0 0 0 2 TJP3 chr19:3728711 5'GT 3728711 Upstream 23bp 21155 chr7 148963787 148963787 1 + G T LUAD 148963788 + 148963768 148963808 41 AGGAACTTCTGGATCTTGCGGCTGCCCCCGGGCAGCAAGGG AGGAACTTCTGGATCTTGCTGCTGCCCCCGGGCAGCAAGGG < 41bp 0.659945177776789 0.897230407646688 NA NA prediction 0.474570459739798 Functional Gain - ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148963788 chr7:148963787 nonsynonymous SNV 0.419 1 20 hm7G_associated_SNPs_22882 0 0 1 0 1 ZNF783 chr7:148963821 5'GT 148963821 Upstream 35bp 21156 chr16 4909968 4909968 1 + G T LIHC 4909969 + 4909949 4909989 41 GTCCAAGTTTTCCAAAGCCGGGTGAGAGGCAGCAGCTTCTT GTCCAAGTTTTCCAAAGCCTGGTGAGAGGCAGCAGCTTCTT < 41bp 0.648191913237512 0.885476962497766 NA NA prediction 0.474570098520509 Functional Gain - UBN1 ENSG00000118900 CDS Human protein_coding chr16:4909969 chr16:4909968 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22883 0 0 1 0 1 UBN1 chr16:4909969 5'GT 4909969 Upstream 2bp 21157 chr1 179033083 179033083 1 + G T UCEC 179033084 + 179033064 179033104 41 AACAATACTTGTTTTTATGGGAAGTGCTATTACTGCCGAGA AACAATACTTGTTTTTATGTGAAGTGCTATTACTGCCGAGA < 41bp 0.408643457666179 0.737284065508758 NA NA prediction 0.474568131017517 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179033084 chr1:179033083 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22884 0 0 1 0 1 FAM20B chr1:179033062 3'AG 179033062 Downstream 22bp 21158 chr4 166231893 166231893 1 + G T LIHC 166231894 + 166231874 166231914 41 CGCTGTGGGAGGCTTTGATGGGAGTACAGGTAATTTCCTTT CGCTGTGGGAGGCTTTGATTGGAGTACAGGTAATTTCCTTT < 41bp 0.401829547486167 0.737277787003015 NA NA prediction 0.474555574006029 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166231894 chr4:166231893 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_22886 0 0 1 0 1 KLHL2 chr4:166231902 5'GT 166231902 Upstream 10bp 21159 chr5 79968598 79968598 1 + G T UCEC 79968599 + 79968579 79968619 41 CTGAAACTGCAGCATTAAAGGCCATTGGAGACAACAGAAGT CTGAAACTGCAGCATTAAATGCCATTGGAGACAACAGAAGT < 41bp 0.402697534480939 0.737256960418922 NA NA prediction 0.474513920837843 Functional Gain - MSH3 ENSG00000113318 CDS Human protein_coding chr5:79968599 chr5:79968598 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_22887 0 0 1 0 1 MSH3 chr5:79968560 3'AG 79968560 Downstream 39bp 21160 chr5 154182873 154182873 1 + G T UCEC 154182874 + 154182854 154182894 41 AAGTCGAGAACTTCAAAAAGGTCAATATGATCAGCCGGGAG AAGTCGAGAACTTCAAAAATGTCAATATGATCAGCCGGGAG < 41bp 0.399187105996693 0.737196825604504 NA NA prediction 0.474393651209008 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154182874 chr5:154182873 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_22893 0 0 1 0 1 LARP1 chr5:154182850 3'AG 154182850 Downstream 24bp 21161 chr12 7360380 7360380 1 + G T STAD 7360381 + 7360361 7360401 41 TTGAGGCAGCTGTGCAGCAGGATCCTAAGCACATGGAAGTG TTGAGGCAGCTGTGCAGCATGATCCTAAGCACATGGAAGTG < 41bp 0.652562321519175 0.889751755033996 NA NA prediction 0.474378867029641 Functional Gain - PEX5 ENSG00000139197 CDS Human protein_coding chr12:7360381 chr12:7360380 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_22895 0 0 0 0 1 PEX5 chr12:7360398 5'GT 7360398 Upstream 19bp 21162 chrX 84310909 84310909 1 + G T COAD 84310910 + 84310890 84310930 41 TTACAGTTTCAGGATTGGCGGGCTTGGTTTCAGCGAGAAAA TTACAGTTTCAGGATTGGCTGGCTTGGTTTCAGCGAGAAAA < 41bp 0.417321221224332 0.737183203387575 NA NA prediction 0.474366406775151 Functional Gain - APOOL ENSG00000155008 CDS Human protein_coding chrX:84310910 chrX:84310909 synonymous SNV . 0 20 hm7G_associated_SNPs_22896 0 0 1 0 2 APOOL chrX:84310833 3'AG 84310833 Downstream 77bp 21163 chrX 84310909 84310909 1 + G T COAD 84310910 + 84310890 84310930 41 TTACAGTTTCAGGATTGGCGGGCTTGGTTTCAGCGAGAAAA TTACAGTTTCAGGATTGGCTGGCTTGGTTTCAGCGAGAAAA < 41bp 0.417321221224332 0.737183203387575 NA NA prediction 0.474366406775151 Functional Gain - APOOL ENSG00000155008 CDS Human protein_coding chrX:84310910 chrX:84310909 synonymous SNV . 0 20 hm7G_associated_SNPs_22896 0 0 1 0 2 APOOL chrX:84310931 5'GT 84310931 Upstream 23bp 21164 chr1 156621424 156621424 1 + G T LUAD 156621425 + 156621405 156621445 41 CATCCCCATCATGGAGGACGGAGGAGGTGGAAGCTCCACTC CATCCCCATCATGGAGGACTGAGGAGGTGGAAGCTCCACTC < 41bp 0.65287602537032 0.890040955093942 NA NA prediction 0.474329859447244 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156621425 chr1:156621424 stopgain 0.879 0 20 hm7G_associated_SNPs_22899 0 0 0 0 1 BCAN chr1:156621481 5'GT 156621481 Upstream 58bp 21165 chr11 112084521 112084521 1 + G T LUAD 112084522 + 112084502 112084542 41 TCAGTTTGAATGCCCCTGAGGGAGACAACCTGAGTCCATTG TCAGTTTGAATGCCCCTGATGGAGACAACCTGAGTCCATTG < 41bp 0.638048102224382 0.875199700155635 NA NA prediction 0.474303195862506 Functional Gain - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112084522 chr11:112084521 nonsynonymous SNV 0.807 1 20 hm7G_associated_SNPs_22900 0 0 0 0 2 BCO2 chr11:112084447 3'AG 112084447 Downstream 75bp 21166 chr11 112084521 112084521 1 + G T LUAD 112084522 + 112084502 112084542 41 TCAGTTTGAATGCCCCTGAGGGAGACAACCTGAGTCCATTG TCAGTTTGAATGCCCCTGATGGAGACAACCTGAGTCCATTG < 41bp 0.638048102224382 0.875199700155635 NA NA prediction 0.474303195862506 Functional Gain - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112084522 chr11:112084521 nonsynonymous SNV 0.807 1 20 hm7G_associated_SNPs_22900 0 0 0 0 2 BCO2 chr11:112084584 5'GT 112084584 Upstream 64bp 21167 chr2 27352471 27352471 1 + G T rs148097943 27352472 + 27352452 27352492 41 ATCCCCAAGCTCCACTGCTGGCCGTGGGCATCTCTTTTGGA ATCCCCAAGCTCCACTGCTTGCCGTGGGCATCTCTTTTGGA < 41bp 0.395936233574584 0.737149429454888 NA NA prediction 0.474298858909775 Functional Gain - ABHD1 ENSG00000143994 CDS Human protein_coding chr2:27352472 chr2:27352471 synonymous SNV . 0 20 hm7G_associated_SNPs_22901 0 0 0 0 1 ABHD1 chr2:27352382 3'AG 27352382 Downstream 90bp 21168 chr13 102231757 102231757 1 + G T LUSC 102231758 + 102231738 102231778 41 AAGATGCACGTCTCCAGATGGCAAAATCTGCAGTAACAGAG AAGATGCACGTCTCCAGATTGCAAAATCTGCAGTAACAGAG < 41bp 0.401589648761324 0.737145405864174 NA NA prediction 0.474290811728347 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102231758 chr13:102231757 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22902 0 0 0 0 1 ITGBL1 chr13:102231778 5'GT 102231778 Upstream 22bp 21169 chr7 143039219 143039219 1 + G T LUAD 143039220 + 143039200 143039240 41 ACCCTACTTGCCTGACCTTGGCTGGAACCAGCTCAGGTCAG ACCCTACTTGCCTGACCTTTGCTGGAACCAGCTCAGGTCAG < 41bp 0.653252080344126 0.890384304215198 NA NA prediction 0.474264447742144 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143039220 chr7:143039219 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22903 0 0 0 0 1 CLCN1 chr7:143039235 5'GT 143039235 Upstream 17bp 21170 chrX 84520224 84520224 1 + G T LUAD 84520225 + 84520205 84520245 41 GGGAGAAGATGGTTTACATGGCAGTTAAAGATTCTTCTCAA GGGAGAAGATGGTTTACATTGCAGTTAAAGATTCTTCTCAA < 41bp 0.403903139168985 0.737130844022291 NA NA prediction 0.474261688044582 Functional Gain - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84520225 chrX:84520224 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22904 0 0 1 0 1 ZNF711 chrX:84520261 5'GT 84520261 Upstream 38bp 21171 chr1 202465911 202465911 1 + G T UCEC 202465912 + 202465892 202465932 41 TCCCTTTTCTTTTTTAGGAGGATGAAACTGATGGCTCTGAA TCCCTTTTCTTTTTTAGGATGATGAAACTGATGGCTCTGAA < 41bp 0.430379048869841 0.737125107127711 NA NA prediction 0.474250214255422 Functional Gain - PPP1R12B ENSG00000077157 CDS Human protein_coding chr1:202465912 chr1:202465911 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_22905 0 0 1 0 2 PPP1R12B chr1:202465909 3'AG 202465909 Downstream 3bp 21172 chr1 202465911 202465911 1 + G T UCEC 202465912 + 202465892 202465932 41 TCCCTTTTCTTTTTTAGGAGGATGAAACTGATGGCTCTGAA TCCCTTTTCTTTTTTAGGATGATGAAACTGATGGCTCTGAA < 41bp 0.430379048869841 0.737125107127711 NA NA prediction 0.474250214255422 Functional Gain - PPP1R12B ENSG00000077157 CDS Human protein_coding chr1:202465912 chr1:202465911 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_22905 0 0 1 0 2 PPP1R12B chr1:202465950 5'GT 202465950 Upstream 40bp 21173 chr20 5166424 5166424 1 + G T CESC 5166425 + 5166405 5166445 41 TGTCCCCGAAGAAGACCTGGGAAGGCTTCATTGGGGGCTTC TGTCCCCGAAGAAGACCTGTGAAGGCTTCATTGGGGGCTTC < 41bp 0.393214746496225 0.737123847877646 NA NA prediction 0.474247695755293 Functional Gain - CDS2 ENSG00000101290 CDS Human protein_coding chr20:5166425 chr20:5166424 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22906 0 0 1 0 2 CDS2 chr20:5166404 3'AG 5166404 Downstream 21bp 21174 chr20 5166424 5166424 1 + G T CESC 5166425 + 5166405 5166445 41 TGTCCCCGAAGAAGACCTGGGAAGGCTTCATTGGGGGCTTC TGTCCCCGAAGAAGACCTGTGAAGGCTTCATTGGGGGCTTC < 41bp 0.393214746496225 0.737123847877646 NA NA prediction 0.474247695755293 Functional Gain - CDS2 ENSG00000101290 CDS Human protein_coding chr20:5166425 chr20:5166424 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22906 0 0 1 0 2 CDS2 chr20:5166472 5'GT 5166472 Upstream 49bp 21175 chr16 20818407 20818407 1 + G T UCEC 20818408 + 20818388 20818428 41 TCGAGGAGAGTCAGCCCGAGGCCAAGGTGAGCAACGGGGAT TCGAGGAGAGTCAGCCCGATGCCAAGGTGAGCAACGGGGAT < 41bp 0.652728782621182 0.889852235287364 NA NA prediction 0.474246905332364 Functional Gain - REXO5 ENSG00000005189 CDS Human protein_coding chr16:20818408 chr16:20818407 nonsynonymous SNV 0.575 0 20 hm7G_associated_SNPs_22907 0 0 0 0 1 REXO5 chr16:20818413 5'GT 20818413 Upstream 7bp 21176 chr3 119452326 119452326 1 + G T LUSC 119452327 + 119452307 119452347 41 TGAAGAGGGCAGCAAGGTTGGACTATGAGTTGGCAGAGGTT TGAAGAGGGCAGCAAGGTTTGACTATGAGTTGGCAGAGGTT < 41bp 0.639769802935127 0.876861067966005 NA NA prediction 0.474182530061755 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119452327 chr3:119452326 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_22913 0 0 0 0 1 MAATS1 chr3:119452353 5'GT 119452353 Upstream 28bp 21177 chr9 115600804 115600804 1 + G T THCA 115600805 + 115600785 115600825 41 TGTGGAGCTGAGAGAATACGGGCCTGTGTACTCCACATGGA TGTGGAGCTGAGAGAATACTGGCCTGTGTACTCCACATGGA < 41bp 0.391538297982737 0.73708750673713 NA NA prediction 0.474175013474259 Functional Gain - SNX30 ENSG00000148158 CDS Human protein_coding chr9:115600805 chr9:115600804 nonsynonymous SNV 0.892 4 20 hm7G_associated_SNPs_22915 0 0 1 0 1 SNX30 chr9:115600778 3'AG 115600778 Downstream 27bp 21178 chr1 236343240 236343240 1 + G T UCEC 236343241 + 236343221 236343261 41 ATACTGCTTTACACCTCTCGGGCCTGCTACAACCTGTTCAT ATACTGCTTTACACCTCTCTGGCCTGCTACAACCTGTTCAT < 41bp 0.393942865298546 0.737081285741134 NA NA prediction 0.474162571482269 Functional Gain - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236343241 chr1:236343240 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_22916 0 0 1 0 2 GPR137B chr1:236343179 3'AG 236343179 Downstream 62bp 21179 chr1 236343240 236343240 1 + G T UCEC 236343241 + 236343221 236343261 41 ATACTGCTTTACACCTCTCGGGCCTGCTACAACCTGTTCAT ATACTGCTTTACACCTCTCTGGCCTGCTACAACCTGTTCAT < 41bp 0.393942865298546 0.737081285741134 NA NA prediction 0.474162571482269 Functional Gain - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236343241 chr1:236343240 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_22916 0 0 1 0 2 GPR137B chr1:236343328 5'GT 236343328 Upstream 89bp 21180 chr11 11977548 11977548 1 + G T COAD 11977549 + 11977529 11977569 41 ATTAATATTTTATATGTAGGGATAAAACAGAAGAATTAATG ATTAATATTTTATATGTAGTGATAAAACAGAAGAATTAATG < 41bp 0.449505314650392 0.737076602914381 NA NA prediction 0.474153205828763 Functional Gain - USP47 ENSG00000170242 CDS Human protein_coding chr11:11977549 chr11:11977548 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_22917 0 0 0 0 1 USP47 chr11:11977548 3'AG 11977548 Downstream 1bp 21181 chrX 47972599 47972599 1 + G T PCPG 47972600 + 47972580 47972620 41 ACGTCCTCAGATGACTTTTGGCAGGCTCCAGAGAATCATCC ACGTCCTCAGATGACTTTTTGCAGGCTCCAGAGAATCATCC < 41bp 0.429565080767563 0.73706778066324 NA NA prediction 0.47413556132648 Functional Gain - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47972600 chrX:47972599 . . 0 20 hm7G_associated_SNPs_22919 0 0 0 0 2 SSX6 chrX:47972576 3'AG 47972576 Downstream 24bp 21182 chrX 47972599 47972599 1 + G T PCPG 47972600 + 47972580 47972620 41 ACGTCCTCAGATGACTTTTGGCAGGCTCCAGAGAATCATCC ACGTCCTCAGATGACTTTTTGCAGGCTCCAGAGAATCATCC < 41bp 0.429565080767563 0.73706778066324 NA NA prediction 0.47413556132648 Functional Gain - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47972600 chrX:47972599 . . 0 20 hm7G_associated_SNPs_22919 0 0 0 0 2 SSX6 chrX:47972625 5'GT 47972625 Upstream 27bp 21183 chr16 84205885 84205885 1 + G T ESCA 84205886 + 84205866 84205906 41 AACCGACTCCCCAGGCTGTGGCCACTGAGGGTGTATTCGTT AACCGACTCCCCAGGCTGTTGCCACTGAGGGTGTATTCGTT < 41bp 0.411008859642927 0.737062669547181 NA NA prediction 0.474125339094362 Functional Gain - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84205886 chr16:84205885 synonymous SNV . 0 20 hm7G_associated_SNPs_22920 0 0 0 0 2 DNAAF1 chr16:84205866 3'AG 84205866 Downstream 20bp 21184 chr16 84205885 84205885 1 + G T ESCA 84205886 + 84205866 84205906 41 AACCGACTCCCCAGGCTGTGGCCACTGAGGGTGTATTCGTT AACCGACTCCCCAGGCTGTTGCCACTGAGGGTGTATTCGTT < 41bp 0.411008859642927 0.737062669547181 NA NA prediction 0.474125339094362 Functional Gain - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84205886 chr16:84205885 synonymous SNV . 0 20 hm7G_associated_SNPs_22920 0 0 0 0 2 DNAAF1 chr16:84205981 5'GT 84205981 Upstream 97bp 21185 chr20 42679966 42679966 1 + G T LUAD 42679967 + 42679947 42679987 41 TCCAGGAGATGGTCCACTCGGAAGTGGCTGCCTATGACTCG TCCAGGAGATGGTCCACTCTGAAGTGGCTGCCTATGACTCG < 41bp 0.389990171433577 0.73706043997892 NA NA prediction 0.474120879957839 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42679967 chr20:42679966 synonymous SNV . 0 20 hm7G_associated_SNPs_22921 0 0 0 0 1 TOX2 chr20:42679946 3'AG 42679946 Downstream 21bp 21186 chr10 98064440 98064440 1 + G T BRCA 98064441 + 98064421 98064461 41 CCCGCAGGAAAGGGTTCAGGGTTGAAAATGAGCTCAGGTAG CCCGCAGGAAAGGGTTCAGTGTTGAAAATGAGCTCAGGTAG < 41bp 0.633100441005839 0.870143599216088 NA NA prediction 0.474086316420497 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98064441 chr10:98064440 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_22922 0 0 0 0 1 DNTT chr10:98064457 5'GT 98064457 Upstream 18bp 21187 chr1 179364275 179364275 1 + G T UCEC 179364276 + 179364256 179364296 41 ATGATGTGAAATTAACAAAGGAAACAGAAAAAGCCCACAAG ATGATGTGAAATTAACAAATGAAACAGAAAAAGCCCACAAG < 41bp 0.641809943399867 0.878852945762385 NA NA prediction 0.474086004725036 Functional Gain - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179364276 chr1:179364275 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22923 0 0 0 0 2 AXDND1 chr1:179364233 3'AG 179364233 Downstream 43bp 21188 chr1 179364275 179364275 1 + G T UCEC 179364276 + 179364256 179364296 41 ATGATGTGAAATTAACAAAGGAAACAGAAAAAGCCCACAAG ATGATGTGAAATTAACAAATGAAACAGAAAAAGCCCACAAG < 41bp 0.641809943399867 0.878852945762385 NA NA prediction 0.474086004725036 Functional Gain - AXDND1 ENSG00000162779 CDS Human protein_coding chr1:179364276 chr1:179364275 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22923 0 0 0 0 2 AXDND1 chr1:179364337 5'GT 179364337 Upstream 63bp 21189 chr5 40959562 40959562 1 + G T UCEC 40959563 + 40959543 40959583 41 TCTTGTAGGAGGGGTTGATGGAGGTTGGAGTTGCTGGTCCT TCTTGTAGGAGGGGTTGATTGAGGTTGGAGTTGCTGGTCCT < 41bp 0.643732441975719 0.880763819032908 NA NA prediction 0.474062754114378 Functional Gain - C7 ENSG00000112936 CDS Human protein_coding chr5:40959563 chr5:40959562 stopgain 1.000 1 20 hm7G_associated_SNPs_22925 0 0 0 0 1 C7 chr5:40959551 3'AG 40959551 Downstream 12bp 21190 chr1 175046902 175046902 1 + G T COAD 175046903 + 175046883 175046923 41 CCCGGGTGAAGAAGCTGGAGGAAGAGATGGTGGAGATGAAG CCCGGGTGAAGAAGCTGGATGAAGAGATGGTGGAGATGAAG < 41bp 0.654226108264299 0.891247089866416 NA NA prediction 0.474041963204234 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175046903 chr1:175046902 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22926 0 0 0 0 1 TNN chr1:175046963 5'GT 175046963 Upstream 62bp 21191 chr16 3454445 3454445 1 + G T LUAD 3454446 + 3454426 3454466 41 GTGGCCGTTTGTATGCAGGGGCAAAAGGTGCTCTTGGAGAA GTGGCCGTTTGTATGCAGGTGCAAAAGGTGCTCTTGGAGAA < 41bp 0.650836487245331 0.88784669822768 NA NA prediction 0.474020421964698 Functional Gain - ZNF174 ENSG00000103343;ENSG00000262621 CDS Human protein_coding chr16:3454446 chr16:3454445 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22927 0 0 0 0 1 ZNF174 chr16:3454426 3'AG 3454426 Downstream 20bp 21192 chr1 76282155 76282155 1 + G T LIHC 76282156 + 76282136 76282176 41 ACTGAAGATTTGTTTCCAGGGTAGTGAACAGACAGCCATGA ACTGAAGATTTGTTTCCAGTGTAGTGAACAGACAGCCATGA < 41bp 0.421098207794529 0.736990810367924 NA NA prediction 0.473981620735847 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76282156 chr1:76282155 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22930 0 0 0 0 2 MSH4 chr1:76282058 3'AG 76282058 Downstream 98bp 21193 chr1 76282155 76282155 1 + G T LIHC 76282156 + 76282136 76282176 41 ACTGAAGATTTGTTTCCAGGGTAGTGAACAGACAGCCATGA ACTGAAGATTTGTTTCCAGTGTAGTGAACAGACAGCCATGA < 41bp 0.421098207794529 0.736990810367924 NA NA prediction 0.473981620735847 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76282156 chr1:76282155 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_22930 0 0 0 0 2 MSH4 chr1:76282231 5'GT 76282231 Upstream 77bp 21194 chr9 135862164 135862164 1 + G T LUSC 135862165 + 135862145 135862185 41 GGCCTCCTGCCCTTACCCCGGGTGAGTCAGAGCCCGGGCTG GGCCTCCTGCCCTTACCCCTGGTGAGTCAGAGCCCGGGCTG < 41bp 0.648820197223681 0.885797995778276 NA NA prediction 0.473955597109191 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135862165 chr9:135862164 synonymous SNV . 0 20 hm7G_associated_SNPs_22931 0 0 1 0 1 GFI1B chr9:135862165 5'GT 135862165 Upstream 2bp 21195 chr6 33381025 33381025 1 + G T PRAD 33381026 + 33381006 33381046 41 CAGCCCCTGGAGAGGGAGAGGGCACATCCTGGGTATGCCGC CAGCCCCTGGAGAGGGAGATGGCACATCCTGGGTATGCCGC < 41bp 0.39797122882062 0.736902537129025 NA NA prediction 0.473805074258051 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33381026 chr6:33381025 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_22935 0 0 1 0 2 PHF1 chr6:33380973 3'AG 33380973 Downstream 53bp 21196 chr6 33381025 33381025 1 + G T PRAD 33381026 + 33381006 33381046 41 CAGCCCCTGGAGAGGGAGAGGGCACATCCTGGGTATGCCGC CAGCCCCTGGAGAGGGAGATGGCACATCCTGGGTATGCCGC < 41bp 0.39797122882062 0.736902537129025 NA NA prediction 0.473805074258051 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33381026 chr6:33381025 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_22935 0 0 1 0 2 PHF1 chr6:33381073 5'GT 33381073 Upstream 49bp 21197 chr20 44682252 44682252 1 + G T LUAD 44682253 + 44682233 44682273 41 AGATGCGTATCTTCACTGTGGCCCAGATGGATGACAATAGC AGATGCGTATCTTCACTGTTGCCCAGATGGATGACAATAGC < 41bp 0.389796924523053 0.736889799447257 NA NA prediction 0.473779598894513 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44682253 chr20:44682252 synonymous SNV . 0 20 hm7G_associated_SNPs_22938 0 0 0 0 2 SLC12A5 chr20:44682217 3'AG 44682217 Downstream 36bp 21198 chr20 44682252 44682252 1 + G T LUAD 44682253 + 44682233 44682273 41 AGATGCGTATCTTCACTGTGGCCCAGATGGATGACAATAGC AGATGCGTATCTTCACTGTTGCCCAGATGGATGACAATAGC < 41bp 0.389796924523053 0.736889799447257 NA NA prediction 0.473779598894513 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44682253 chr20:44682252 synonymous SNV . 0 20 hm7G_associated_SNPs_22938 0 0 0 0 2 SLC12A5 chr20:44682348 5'GT 44682348 Upstream 97bp 21199 chr1 76259820 76259820 1 + G T UCEC 76259821 + 76259801 76259841 41 GGCTTCCCTAAAGATAATTGGAAGACTTCATTGGATTGATA GGCTTCCCTAAAGATAATTTGAAGACTTCATTGGATTGATA < 41bp 0.420027610837191 0.736870055958987 NA NA prediction 0.473740111917974 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76259821 chr1:76259820 stopgain 1.000 1 20 hm7G_associated_SNPs_22940 0 0 1 0 1 RABGGTB chr1:76259769 3'AG 76259769 Downstream 52bp 21200 chr11 293881 293881 1 + G T COAD 293882 + 293862 293902 41 GGACGCAGTGCGGGCCCGGGGCCTCCTGGACAGGAGCTTTG GGACGCAGTGCGGGCCCGGTGCCTCCTGGACAGGAGCTTTG < 41bp 0.382605639111964 0.736829097367785 NA NA prediction 0.473658194735569 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:293882 chr11:293881 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_22943 0 0 1 0 2 PGGHG chr11:293830 3'AG 293830 Downstream 52bp 21201 chr11 293881 293881 1 + G T COAD 293882 + 293862 293902 41 GGACGCAGTGCGGGCCCGGGGCCTCCTGGACAGGAGCTTTG GGACGCAGTGCGGGCCCGGTGCCTCCTGGACAGGAGCTTTG < 41bp 0.382605639111964 0.736829097367785 NA NA prediction 0.473658194735569 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:293882 chr11:293881 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_22943 0 0 1 0 2 PGGHG chr11:293925 5'GT 293925 Upstream 45bp 21202 chr7 90042001 90042001 1 + G T THCA 90042002 + 90041982 90042022 41 TTGCCTGCCATGGGCTGTCGGGATGTCCACGCAGCCACAGT TTGCCTGCCATGGGCTGTCTGGATGTCCACGCAGCCACAGT < 41bp 0.632711598923592 0.86952207210468 NA NA prediction 0.473620946362178 Functional Gain - CLDN12 ENSG00000157224 CDS Human processed_transcript chr7:90042002 chr7:90042001 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_22944 0 0 1 0 1 CLDN12 chr7:90041958 3'AG 90041958 Downstream 44bp 21203 chr2 74076577 74076577 1 + G T OV 74076578 + 74076558 74076598 41 GCCAGTGCCAACACTGCCCGGGGAGTGGAGACATGTGGAAT GCCAGTGCCAACACTGCCCTGGGAGTGGAGACATGTGGAAT < 41bp 0.655158364558704 0.89195682221558 NA NA prediction 0.473596915313752 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076578 chr2:74076577 nonsynonymous SNV 0.926 2 20 hm7G_associated_SNPs_22945 0 0 1 0 2 STAMBP chr2:74076490 3'AG 74076490 Downstream 88bp 21204 chr2 74076577 74076577 1 + G T OV 74076578 + 74076558 74076598 41 GCCAGTGCCAACACTGCCCGGGGAGTGGAGACATGTGGAAT GCCAGTGCCAACACTGCCCTGGGAGTGGAGACATGTGGAAT < 41bp 0.655158364558704 0.89195682221558 NA NA prediction 0.473596915313752 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076578 chr2:74076577 nonsynonymous SNV 0.926 2 20 hm7G_associated_SNPs_22945 0 0 1 0 2 STAMBP chr2:74076614 5'GT 74076614 Upstream 38bp 21205 chr22 18975354 18975354 1 + G T LUSC 18975355 + 18975335 18975375 41 ATTCATGAAGAATTCCCCAGGGAGCTGGAGTCCTCCATCTC ATTCATGAAGAATTCCCCATGGAGCTGGAGTCCTCCATCTC < 41bp 0.402381788639219 0.736791595191575 NA NA prediction 0.47358319038315 Functional Gain - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18975355 chr22:18975354 . . 0 20 hm7G_associated_SNPs_22948 0 0 0 0 2 DGCR5 chr22:18975270 3'AG 18975270 Downstream 85bp 21206 chr22 18975354 18975354 1 + G T LUSC 18975355 + 18975335 18975375 41 ATTCATGAAGAATTCCCCAGGGAGCTGGAGTCCTCCATCTC ATTCATGAAGAATTCCCCATGGAGCTGGAGTCCTCCATCTC < 41bp 0.402381788639219 0.736791595191575 NA NA prediction 0.47358319038315 Functional Gain - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18975355 chr22:18975354 . . 0 20 hm7G_associated_SNPs_22948 0 0 0 0 2 DGCR5 chr22:18975413 5'GT 18975413 Upstream 60bp 21207 chr5 137762685 137762685 1 + G T UCEC 137762686 + 137762666 137762706 41 CGACTACGGTCAGAAGATGGGCAGCCAATGGTGCTCAAACT CGACTACGGTCAGAAGATGTGCAGCCAATGGTGCTCAAACT < 41bp 0.64981285259106 0.886594212963437 NA NA prediction 0.473562720744754 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137762686 chr5:137762685 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22949 0 0 1 0 2 KDM3B chr5:137762664 3'AG 137762664 Downstream 22bp 21208 chr5 137762685 137762685 1 + G T UCEC 137762686 + 137762666 137762706 41 CGACTACGGTCAGAAGATGGGCAGCCAATGGTGCTCAAACT CGACTACGGTCAGAAGATGTGCAGCCAATGGTGCTCAAACT < 41bp 0.64981285259106 0.886594212963437 NA NA prediction 0.473562720744754 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137762686 chr5:137762685 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22949 0 0 1 0 2 KDM3B chr5:137762754 5'GT 137762754 Upstream 70bp 21209 chr10 95394518 95394518 1 + G T LUAD 95394519 + 95394499 95394539 41 CCCTTCTCGTTTGTAGAAAGGACCTGTAGACGAAACTGGTT CCCTTCTCGTTTGTAGAAATGACCTGTAGACGAAACTGGTT < 41bp 0.633200133740715 0.86997911700256 NA NA prediction 0.473557966523691 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95394519 chr10:95394518 stopgain 1.000 1 20 hm7G_associated_SNPs_22950 0 0 0 0 1 PDE6C chr10:95394515 3'AG 95394515 Downstream 4bp 21210 chr16 58538092 58538092 1 + G T LGG 58538093 + 58538073 58538113 41 ACACCTTCTTCAACTTCGAGGACATGCAGGAGATCACCAAG ACACCTTCTTCAACTTCGATGACATGCAGGAGATCACCAAG < 41bp 0.38920993212722 0.736764712704153 NA NA prediction 0.473529425408306 Functional Gain - NDRG4 ENSG00000103034;ENSG00000103034 exonic;splicing Human protein_coding chr16:58538093 chr16:58538092 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22951 0 0 1 0 2 NDRG4 chr16:58538058 3'AG 58538058 Downstream 35bp 21211 chr16 58538092 58538092 1 + G T LGG 58538093 + 58538073 58538113 41 ACACCTTCTTCAACTTCGAGGACATGCAGGAGATCACCAAG ACACCTTCTTCAACTTCGATGACATGCAGGAGATCACCAAG < 41bp 0.38920993212722 0.736764712704153 NA NA prediction 0.473529425408306 Functional Gain - NDRG4 ENSG00000103034;ENSG00000103034 exonic;splicing Human protein_coding chr16:58538093 chr16:58538092 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_22951 0 0 1 0 2 NDRG4 chr16:58538178 5'GT 58538178 Upstream 87bp 21212 chr13 41650333 41650333 1 + G T LUAD 41650334 + 41650314 41650354 41 CAGGAAGCAGAAGAAGGAGGGGTCTCTACAGAGACAGAAAA CAGGAAGCAGAAGAAGGAGTGGTCTCTACAGAGACAGAAAA < 41bp 0.640942680287407 0.877702098834461 NA NA prediction 0.473518837094109 Functional Gain - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41650334 chr13:41650333 nonsynonymous SNV 0.383 0 20 hm7G_associated_SNPs_22955 0 0 0 0 1 WBP4 chr13:41650373 5'GT 41650373 Upstream 41bp 21213 chr16 67100596 67100596 1 + G T UCEC 67100597 + 67100577 67100617 41 TGTCTTAGGTATATTTGAAGGCTCCCATGATTCTGAATGGA TGTCTTAGGTATATTTGAATGCTCCCATGATTCTGAATGGA < 41bp 0.637623585491611 0.874370497762218 NA NA prediction 0.473493824541214 Functional Gain - CBFB ENSG00000067955 CDS Human protein_coding chr16:67100597 chr16:67100596 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_22956 0 0 1 0 1 CBFB chr16:67100585 3'AG 67100585 Downstream 12bp 21214 chr20 31760799 31760799 1 + G T UCEC 31760800 + 31760780 31760820 41 AATCCAGTGCTTGGCAACTGGCCAAGCAGAAGGCCCAGGAA AATCCAGTGCTTGGCAACTTGCCAAGCAGAAGGCCCAGGAA < 41bp 0.644349371060937 0.881093397254619 NA NA prediction 0.473488052387365 Functional Gain - BPIFA2 ENSG00000131050 CDS Human protein_coding chr20:31760800 chr20:31760799 synonymous SNV . 0 20 hm7G_associated_SNPs_22958 0 0 0 0 2 BPIFA2 chr20:31760738 3'AG 31760738 Downstream 62bp 21215 chr20 31760799 31760799 1 + G T UCEC 31760800 + 31760780 31760820 41 AATCCAGTGCTTGGCAACTGGCCAAGCAGAAGGCCCAGGAA AATCCAGTGCTTGGCAACTTGCCAAGCAGAAGGCCCAGGAA < 41bp 0.644349371060937 0.881093397254619 NA NA prediction 0.473488052387365 Functional Gain - BPIFA2 ENSG00000131050 CDS Human protein_coding chr20:31760800 chr20:31760799 synonymous SNV . 0 20 hm7G_associated_SNPs_22958 0 0 0 0 2 BPIFA2 chr20:31760882 5'GT 31760882 Upstream 84bp 21216 chr8 92401612 92401612 1 + G T LUSC 92401613 + 92401593 92401633 41 AGAAGTGTTATTTAATCCTGGATTGCAGTGGATTTACCTTT AGAAGTGTTATTTAATCCTTGATTGCAGTGGATTTACCTTT < 41bp 0.41651411474003 0.736713030206036 NA NA prediction 0.473426060412073 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92401613 chr8:92401612 synonymous SNV . 0 20 hm7G_associated_SNPs_22960 0 0 0 1 2 SLC26A7 chr8:92401566 3'AG 92401566 Downstream 47bp 21217 chr8 92401612 92401612 1 + G T LUSC 92401613 + 92401593 92401633 41 AGAAGTGTTATTTAATCCTGGATTGCAGTGGATTTACCTTT AGAAGTGTTATTTAATCCTTGATTGCAGTGGATTTACCTTT < 41bp 0.41651411474003 0.736713030206036 NA NA prediction 0.473426060412073 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92401613 chr8:92401612 synonymous SNV . 0 20 hm7G_associated_SNPs_22960 0 0 0 1 2 SLC26A7 chr8:92401666 5'GT 92401666 Upstream 55bp 21218 chr9 84604698 84604698 1 + G T LUSC 84604699 + 84604679 84604719 41 TCTTTTGTTCTCAGCATCAGGGCAGAGCCAAGAGGAGAAGG TCTTTTGTTCTCAGCATCATGGCAGAGCCAAGAGGAGAAGG < 41bp 0.640964306573683 0.877649449148001 NA NA prediction 0.473370285148636 Functional Gain - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84604699 chr9:84604698 nonsynonymous SNV 0.065 3 20 hm7G_associated_SNPs_22965 0 0 0 0 2 SPATA31D1 chr9:84604693 3'AG 84604693 Downstream 6bp 21219 chr9 84604698 84604698 1 + G T LUSC 84604699 + 84604679 84604719 41 TCTTTTGTTCTCAGCATCAGGGCAGAGCCAAGAGGAGAAGG TCTTTTGTTCTCAGCATCATGGCAGAGCCAAGAGGAGAAGG < 41bp 0.640964306573683 0.877649449148001 NA NA prediction 0.473370285148636 Functional Gain - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84604699 chr9:84604698 nonsynonymous SNV 0.065 3 20 hm7G_associated_SNPs_22965 0 0 0 0 2 SPATA31D1 chr9:84604738 5'GT 84604738 Upstream 41bp 21220 chr11 117023221 117023221 1 + G T UCEC 117023222 + 117023202 117023242 41 TGCAGCAGAAGATATTCAAGGAGATGACCGATGGATGTCTC TGCAGCAGAAGATATTCAATGAGATGACCGATGGATGTCTC < 41bp 0.413952045861786 0.736678844871472 NA NA prediction 0.473357689742944 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117023222 chr11:117023221 stopgain 1.000 1 20 hm7G_associated_SNPs_22966 0 0 1 0 2 PAFAH1B2 chr11:117023157 3'AG 117023157 Downstream 65bp 21221 chr11 117023221 117023221 1 + G T UCEC 117023222 + 117023202 117023242 41 TGCAGCAGAAGATATTCAAGGAGATGACCGATGGATGTCTC TGCAGCAGAAGATATTCAATGAGATGACCGATGGATGTCTC < 41bp 0.413952045861786 0.736678844871472 NA NA prediction 0.473357689742944 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117023222 chr11:117023221 stopgain 1.000 1 20 hm7G_associated_SNPs_22966 0 0 1 0 2 PAFAH1B2 chr11:117023244 5'GT 117023244 Upstream 24bp 21222 chr10 124248975 124248975 1 + G T LUAD 124248976 + 124248956 124248996 41 AGAGGTGCCGGTGGCTAGTGGGTCTGGGTTTATTGTGTCGG AGAGGTGCCGGTGGCTAGTTGGTCTGGGTTTATTGTGTCGG < 41bp 0.658007072858044 0.894685715455274 NA NA prediction 0.47335728519446 Functional Gain - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124248976 chr10:124248975 nonsynonymous SNV 0.929 5 20 hm7G_associated_SNPs_22967 0 0 0 0 1 HTRA1 chr10:124248938 3'AG 124248938 Downstream 38bp 21223 chr10 135002080 135002080 1 + G T LUAD 135002081 + 135002061 135002101 41 CTCCTGTCCCAGCTGGGCCGGCCCTTCCGGGAGTACGAGCT CTCCTGTCCCAGCTGGGCCTGCCCTTCCGGGAGTACGAGCT < 41bp 0.379964647028934 0.736644126969446 NA NA prediction 0.473288253938893 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135002081 chr10:135002080 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22970 0 0 0 0 2 KNDC1 chr10:135002043 3'AG 135002043 Downstream 38bp 21224 chr10 135002080 135002080 1 + G T LUAD 135002081 + 135002061 135002101 41 CTCCTGTCCCAGCTGGGCCGGCCCTTCCGGGAGTACGAGCT CTCCTGTCCCAGCTGGGCCTGCCCTTCCGGGAGTACGAGCT < 41bp 0.379964647028934 0.736644126969446 NA NA prediction 0.473288253938893 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135002081 chr10:135002080 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22970 0 0 0 0 2 KNDC1 chr10:135002157 5'GT 135002157 Upstream 78bp 21225 chr16 625940 625940 1 + G T UCEC 625941 + 625921 625961 41 ACGCTAATCTTCAGTACACGGAAGGCGGAGAACCCTGCCCA ACGCTAATCTTCAGTACACTGAAGGCGGAGAACCCTGCCCA < 41bp 0.660421128332105 0.897061189892214 NA NA prediction 0.473280123120216 Functional Gain - PIGQ ENSG00000007541 CDS Human protein_coding chr16:625941 chr16:625940 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_22971 0 0 0 0 1 PIGQ chr16:625970 5'GT 625970 Upstream 31bp 21226 chr5 176017621 176017621 1 + G T STAD 176017622 + 176017602 176017642 41 GCTCATCAGTGTCATCATAGGATTGGGAGTGGCTTTGCTGC GCTCATCAGTGTCATCATATGATTGGGAGTGGCTTTGCTGC < 41bp 0.649354066803245 0.8859827077996 NA NA prediction 0.473257281992711 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176017622 chr5:176017621 stopgain 0.296 0 20 hm7G_associated_SNPs_22972 0 0 0 0 2 CDHR2 chr5:176017564 3'AG 176017564 Downstream 58bp 21227 chr5 176017621 176017621 1 + G T STAD 176017622 + 176017602 176017642 41 GCTCATCAGTGTCATCATAGGATTGGGAGTGGCTTTGCTGC GCTCATCAGTGTCATCATATGATTGGGAGTGGCTTTGCTGC < 41bp 0.649354066803245 0.8859827077996 NA NA prediction 0.473257281992711 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176017622 chr5:176017621 stopgain 0.296 0 20 hm7G_associated_SNPs_22972 0 0 0 0 2 CDHR2 chr5:176017688 5'GT 176017688 Upstream 68bp 21228 chr16 31405652 31405652 1 + G T LUSC 31405653 + 31405633 31405673 41 GCAGAGCGTGGTGCAGTTCGGTGGATCTCGGTAGGCCCCAC GCAGAGCGTGGTGCAGTTCTGTGGATCTCGGTAGGCCCCAC < 41bp 0.411388738425002 0.736608380873707 NA NA prediction 0.473216761747415 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31405653 chr16:31405652 nonsynonymous SNV 0.950 3 20 hm7G_associated_SNPs_22974 0 0 0 0 2 ITGAD chr16:31405557 3'AG 31405557 Downstream 96bp 21229 chr16 31405652 31405652 1 + G T LUSC 31405653 + 31405633 31405673 41 GCAGAGCGTGGTGCAGTTCGGTGGATCTCGGTAGGCCCCAC GCAGAGCGTGGTGCAGTTCTGTGGATCTCGGTAGGCCCCAC < 41bp 0.411388738425002 0.736608380873707 NA NA prediction 0.473216761747415 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31405653 chr16:31405652 nonsynonymous SNV 0.950 3 20 hm7G_associated_SNPs_22974 0 0 0 0 2 ITGAD chr16:31405662 5'GT 31405662 Upstream 11bp 21230 chr8 71593549 71593549 1 + G T UCEC 71593550 + 71593530 71593570 41 TCTACTTCATTGCTTGCAAGGAGGAGTTTTTACAAGGTGAG TCTACTTCATTGCTTGCAATGAGGAGTTTTTACAAGGTGAG < 41bp 0.521724296816854 0.758322558636683 NA NA prediction 0.473196523639659 Functional Gain - XKR9 ENSG00000221947 CDS Human protein_coding chr8:71593550 chr8:71593549 stopgain 1.000 0 20 hm7G_associated_SNPs_22975 0 0 0 0 1 XKR9 chr8:71593565 5'GT 71593565 Upstream 17bp 21231 chr11 22397583 22397583 1 + G T LUAD 22397584 + 22397564 22397604 41 GCTATTCTCATACTAGAGGGGTAGCAATCTCATTCTTGGTA GCTATTCTCATACTAGAGGTGTAGCAATCTCATTCTTGGTA < 41bp 0.419526001902063 0.736573902965245 NA NA prediction 0.47314780593049 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22397584 chr11:22397583 synonymous SNV . 0 20 hm7G_associated_SNPs_22976 0 0 0 0 2 SLC17A6 chr11:22397528 3'AG 22397528 Downstream 56bp 21232 chr11 22397583 22397583 1 + G T LUAD 22397584 + 22397564 22397604 41 GCTATTCTCATACTAGAGGGGTAGCAATCTCATTCTTGGTA GCTATTCTCATACTAGAGGTGTAGCAATCTCATTCTTGGTA < 41bp 0.419526001902063 0.736573902965245 NA NA prediction 0.47314780593049 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22397584 chr11:22397583 synonymous SNV . 0 20 hm7G_associated_SNPs_22976 0 0 0 0 2 SLC17A6 chr11:22397638 5'GT 22397638 Upstream 56bp 21233 chr21 47537845 47537845 1 + G T LUAD 47537846 + 47537826 47537866 41 GGAGCGAGGAGACCAAGGCGGCAAGGTAAGTGGCCTTGTCA GGAGCGAGGAGACCAAGGCTGCAAGGTAAGTGGCCTTGTCA < 41bp 0.395311400611604 0.736536085961514 NA NA prediction 0.473072171923027 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47537846 chr21:47537845 nonsynonymous SNV 0.015 2 20 hm7G_associated_SNPs_22977 0 0 0 0 2 COL6A2 chr21:47537788 3'AG 47537788 Downstream 58bp 21234 chr21 47537845 47537845 1 + G T LUAD 47537846 + 47537826 47537866 41 GGAGCGAGGAGACCAAGGCGGCAAGGTAAGTGGCCTTGTCA GGAGCGAGGAGACCAAGGCTGCAAGGTAAGTGGCCTTGTCA < 41bp 0.395311400611604 0.736536085961514 NA NA prediction 0.473072171923027 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47537846 chr21:47537845 nonsynonymous SNV 0.015 2 20 hm7G_associated_SNPs_22977 0 0 0 0 2 COL6A2 chr21:47537850 5'GT 47537850 Upstream 6bp 21235 chr3 1444012 1444012 1 + G T LUSC 1444013 + 1443993 1444033 41 TTTATTCAGATTCTGTACCGGCAAAACAGACAGAGTAAAAC TTTATTCAGATTCTGTACCTGCAAAACAGACAGAGTAAAAC < 41bp 0.451326975533822 0.736514346840746 NA NA prediction 0.473028693681492 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1444013 chr3:1444012 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22978 0 0 0 0 1 CNTN6 chr3:1444002 3'AG 1444002 Downstream 11bp 21236 chr17 7252350 7252350 1 + G T UCEC 7252351 + 7252331 7252371 41 CTGGGAAGCCTGCACCCTGGGGCCCTACTGTTTCGAGCGTC CTGGGAAGCCTGCACCCTGTGGCCCTACTGTTTCGAGCGTC < 41bp 0.380620773210345 0.736473655477604 NA NA prediction 0.472947310955208 Functional Gain - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7252351 chr17:7252350 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_22985 0 0 0 0 1 ACAP1 chr17:7252314 3'AG 7252314 Downstream 37bp 21237 chrX 130222661 130222661 1 + G T STAD 130222662 + 130222642 130222682 41 TTCCCATGACGATGAGGAAGGAGCGGGTAACCCTCCCATTC TTCCCATGACGATGAGGAATGAGCGGGTAACCCTCCCATTC < 41bp 0.630779559124073 0.867239454597075 NA NA prediction 0.472919790946003 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130222662 chrX:130222661 stopgain 0.917 0 20 hm7G_associated_SNPs_22987 0 0 0 0 1 ARHGAP36 chrX:130222602 3'AG 130222602 Downstream 60bp 21238 chr7 65546957 65546957 1 + G T UCEC 65546958 + 65546938 65546978 41 TCCTCACCAAGGCCGAGATGGACCAGATACTCCATGGCCTA TCCTCACCAAGGCCGAGATTGACCAGATACTCCATGGCCTA < 41bp 0.386002174579349 0.736440485431973 NA NA prediction 0.472880970863946 Functional Gain - ASL ENSG00000126522 CDS Human protein_coding chr7:65546958 chr7:65546957 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_22989 0 0 0 0 1 ASL chr7:65546984 5'GT 65546984 Upstream 28bp 21239 chr19 54403978 54403978 1 + G T LAML 54403979 + 54403959 54403999 41 ACAACCCGCACCTTCTGCGGGACCCCGGACTACATAGCCCC ACAACCCGCACCTTCTGCGTGACCCCGGACTACATAGCCCC < 41bp 0.382147900021317 0.736419592305177 NA NA prediction 0.472839184610353 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403979 chr19:54403978 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_22991 0 0 0 0 1 PRKCG chr19:54404003 5'GT 54404003 Upstream 26bp 21240 chrX 105882817 105882817 1 + G T LUAD 105882818 + 105882798 105882838 41 ATTGAAGACTTGCAGTATAGGGAACAAAAGCGCATTGCAAT ATTGAAGACTTGCAGTATATGGAACAAAAGCGCATTGCAAT < 41bp 0.632433965696567 0.868848948707037 NA NA prediction 0.472829966020941 Functional Gain - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105882818 chrX:105882817 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22992 0 0 1 0 1 CXorf57 chrX:105882757 3'AG 105882757 Downstream 61bp 21241 chr7 4798734 4798734 1 + G T LUAD 4798735 + 4798715 4798755 41 GATGTCCCCTCGCTCCGGCGGCCTGCAGACCCCAGAGTGCC GATGTCCCCTCGCTCCGGCTGCCTGCAGACCCCAGAGTGCC < 41bp 0.388568347753936 0.736407031108635 NA NA prediction 0.472814062217269 Functional Gain - FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4798735 chr7:4798734 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_22993 0 0 1 0 1 FOXK1 chr7:4798682 3'AG 4798682 Downstream 53bp 21242 chr3 101573503 101573503 1 + G T LUAD 101573504 + 101573484 101573524 41 TGAATGCACTTCACATGCTGGATATTAAAGAGCACAATGGA TGAATGCACTTCACATGCTTGATATTAAAGAGCACAATGGA < 41bp 0.647005982881241 0.883395968876526 NA NA prediction 0.47277997199057 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573504 chr3:101573503 synonymous SNV . 0 20 hm7G_associated_SNPs_22994 0 0 1 0 2 NFKBIZ chr3:101573422 3'AG 101573422 Downstream 82bp 21243 chr3 101573503 101573503 1 + G T LUAD 101573504 + 101573484 101573524 41 TGAATGCACTTCACATGCTGGATATTAAAGAGCACAATGGA TGAATGCACTTCACATGCTTGATATTAAAGAGCACAATGGA < 41bp 0.647005982881241 0.883395968876526 NA NA prediction 0.47277997199057 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573504 chr3:101573503 synonymous SNV . 0 20 hm7G_associated_SNPs_22994 0 0 1 0 2 NFKBIZ chr3:101573527 5'GT 101573527 Upstream 25bp 21244 chr22 18003287 18003287 1 + G T ESCA 18003288 + 18003268 18003308 41 AGTTGGAGGAGAAGGTCAAGGCAGTGGAAGGTATGTGCAGT AGTTGGAGGAGAAGGTCAATGCAGTGGAAGGTATGTGCAGT < 41bp 0.654636080013441 0.891008333179962 NA NA prediction 0.472744506333043 Functional Gain - CECR2 ENSG00000099954 CDS Human protein_coding chr22:18003288 chr22:18003287 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_22997 0 0 0 0 1 CECR2 chr22:18003297 5'GT 18003297 Upstream 11bp 21245 chr5 65118660 65118660 1 + G T HNSC 65118661 + 65118641 65118681 41 ACCTGGGGGATCTCTGGACGGCATGGACATGCTCCACAATT ACCTGGGGGATCTCTGGACTGCATGGACATGCTCCACAATT < 41bp 0.428962318527155 0.736371497709006 NA NA prediction 0.472742995418012 Functional Gain - NLN ENSG00000123213 CDS Human protein_coding chr5:65118661 chr5:65118660 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_22998 0 0 1 0 1 NLN chr5:65118609 3'AG 65118609 Downstream 52bp 21246 chr6 10709502 10709502 1 + G T UCEC 10709503 + 10709483 10709523 41 AGTCCAAAATTGGCAAAAAGGAGCCTGGTGACACAGTGCAC AGTCCAAAATTGGCAAAAATGAGCCTGGTGACACAGTGCAC < 41bp 0.61359039174535 0.849955243657335 NA NA prediction 0.472729703823971 Functional Gain - PAK1IP1 ENSG00000111845 CDS Human protein_coding chr6:10709503 chr6:10709502 nonsynonymous SNV 0.167 0 20 hm7G_associated_SNPs_22999 0 0 1 0 1 PAK1IP1 chr6:10709471 3'AG 10709471 Downstream 32bp 21247 chr1 158813189 158813189 1 + G T STAD 158813190 + 158813170 158813210 41 ACATCGGAAGCAAGAGGGAGGATTCCTGTAGCTCAGGTAAG ACATCGGAAGCAAGAGGGATGATTCCTGTAGCTCAGGTAAG < 41bp 0.634146641729762 0.870481858320971 NA NA prediction 0.472670433182418 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158813190 chr1:158813189 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_23000 0 0 0 0 1 MNDA chr1:158813205 5'GT 158813205 Upstream 17bp 21248 chr13 114188476 114188476 1 + G T COAD 114188477 + 114188457 114188497 41 CTCATTGGACCCTATTATCGGAAGCTGCACATGGAAAGCAA CTCATTGGACCCTATTATCTGAAGCTGCACATGGAAAGCAA < 41bp 0.645757883218381 0.882085052848323 NA NA prediction 0.472654339259883 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114188477 chr13:114188476 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_23001 0 0 1 0 1 TMCO3 chr13:114188555 5'GT 114188555 Upstream 80bp 21249 chr3 1269504 1269504 1 + G T UCEC 1269505 + 1269485 1269525 41 TTTTTTTTTCCTTGAAGGTGGAAGCAAAATGGCACAGACAT TTTTTTTTTCCTTGAAGGTTGAAGCAAAATGGCACAGACAT < 41bp 0.433989525850133 0.736302475240666 NA NA prediction 0.472604950481332 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1269505 chr3:1269504 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23004 0 0 0 0 1 CNTN6 chr3:1269502 3'AG 1269502 Downstream 3bp 21250 chr16 25232898 25232898 1 + G T OV 25232899 + 25232879 25232919 41 GGATGCTCGGGGCTGCCTTGGCCAAGGTGGGTAAACCCCAG GGATGCTCGGGGCTGCCTTTGCCAAGGTGGGTAAACCCCAG < 41bp 0.654474434462191 0.890757171496704 NA NA prediction 0.472565474069025 Functional Gain - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25232899 chr16:25232898 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_23005 0 0 0 0 1 AQP8 chr16:25232904 5'GT 25232904 Upstream 7bp 21251 chr11 550143 550143 1 + G T LUSC 550144 + 550124 550164 41 TGGAACAATTGGAGGTGCTGGACCTGGAGGGCAACAGCGTG TGGAACAATTGGAGGTGCTTGACCTGGAGGGCAACAGCGTG < 41bp 0.658828031208321 0.895092391163614 NA NA prediction 0.472528719910587 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:550144 chr11:550143 synonymous SNV . 0 20 hm7G_associated_SNPs_23007 0 0 0 0 1 LRRC56 chr11:550072 3'AG 550072 Downstream 72bp 21252 chr16 31368665 31368665 1 + G T LUAD 31368666 + 31368646 31368686 41 CCCACCCAGCTCACCCAGAGGCTCCCGGTGTCCAGGCAGGG CCCACCCAGCTCACCCAGATGCTCCCGGTGTCCAGGCAGGG < 41bp 0.382283008016255 0.736261808690754 NA NA prediction 0.472523617381509 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31368666 chr16:31368665 nonsynonymous SNV 0.018 1 20 hm7G_associated_SNPs_23008 0 0 0 0 1 ITGAX chr16:31368574 3'AG 31368574 Downstream 92bp 21253 chr1 24786997 24786997 1 + G T LIHC 24786998 + 24786978 24787018 41 ATTTTACCTGGACTTCATCGGGGAGGACGTGCTGCACATCT ATTTTACCTGGACTTCATCTGGGAGGACGTGCTGCACATCT < 41bp 0.400540320480341 0.736249813323688 NA NA prediction 0.472499626647376 Functional Gain - NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24786998 chr1:24786997 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_23009 0 0 1 0 2 NIPAL3 chr1:24786971 3'AG 24786971 Downstream 27bp 21254 chr1 24786997 24786997 1 + G T LIHC 24786998 + 24786978 24787018 41 ATTTTACCTGGACTTCATCGGGGAGGACGTGCTGCACATCT ATTTTACCTGGACTTCATCTGGGAGGACGTGCTGCACATCT < 41bp 0.400540320480341 0.736249813323688 NA NA prediction 0.472499626647376 Functional Gain - NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24786998 chr1:24786997 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_23009 0 0 1 0 2 NIPAL3 chr1:24787034 5'GT 24787034 Upstream 38bp 21255 chr16 57712186 57712186 1 + G T LUAD 57712187 + 57712167 57712207 41 ACAGGTCTGTGGTCCGCTTGGCCGTCACCATTCTGGACATT ACAGGTCTGTGGTCCGCTTTGCCGTCACCATTCTGGACATT < 41bp 0.380880472586629 0.736207962176441 NA NA prediction 0.472415924352883 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57712187 chr16:57712186 nonsynonymous SNV 0.035 2 20 hm7G_associated_SNPs_23011 0 0 0 0 1 ADGRG3 chr16:57712228 5'GT 57712228 Upstream 43bp 21256 chr2 119738995 119738995 1 + G T LUSC 119738996 + 119738976 119739016 41 GTTTTTCAGGAAGCAAAGGGGACAGGGGCATGAAAGGAGAT GTTTTTCAGGAAGCAAAGGTGACAGGGGCATGAAAGGAGAT < 41bp 0.644944206444233 0.881141884594286 NA NA prediction 0.472395356300106 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119738996 chr2:119738995 synonymous SNV . 0 20 hm7G_associated_SNPs_23013 0 0 0 0 2 MARCO chr2:119738985 3'AG 119738985 Downstream 11bp 21257 chr2 119738995 119738995 1 + G T LUSC 119738996 + 119738976 119739016 41 GTTTTTCAGGAAGCAAAGGGGACAGGGGCATGAAAGGAGAT GTTTTTCAGGAAGCAAAGGTGACAGGGGCATGAAAGGAGAT < 41bp 0.644944206444233 0.881141884594286 NA NA prediction 0.472395356300106 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119738996 chr2:119738995 synonymous SNV . 0 20 hm7G_associated_SNPs_23013 0 0 0 0 2 MARCO chr2:119739083 5'GT 119739083 Upstream 89bp 21258 chr1 150526900 150526900 1 + G T UCEC 150526901 + 150526881 150526921 41 GCGCAGCCTTTAACTCCCAGGAATTCATGGGCCAGCTGTAT GCGCAGCCTTTAACTCCCATGAATTCATGGGCCAGCTGTAT < 41bp 0.382719132323913 0.736184795119223 NA NA prediction 0.472369590238447 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150526901 chr1:150526900 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23014 0 0 1 0 2 ADAMTSL4 chr1:150526841 3'AG 150526841 Downstream 60bp 21259 chr1 150526900 150526900 1 + G T UCEC 150526901 + 150526881 150526921 41 GCGCAGCCTTTAACTCCCAGGAATTCATGGGCCAGCTGTAT GCGCAGCCTTTAACTCCCATGAATTCATGGGCCAGCTGTAT < 41bp 0.382719132323913 0.736184795119223 NA NA prediction 0.472369590238447 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150526901 chr1:150526900 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23014 0 0 1 0 2 ADAMTSL4 chr1:150526943 5'GT 150526943 Upstream 44bp 21260 chr17 45776002 45776002 1 + G T SARC 45776003 + 45775983 45776023 41 TGCGTCAGATCTGTGGTTTGGAGCAGCAGCTGCGGCAACAG TGCGTCAGATCTGTGGTTTTGAGCAGCAGCTGCGGCAACAG < 41bp 0.657079615933756 0.893240143948424 NA NA prediction 0.472321056029336 Functional Gain - TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45776003 chr17:45776002 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_23018 0 0 1 0 1 TBKBP1 chr17:45775961 3'AG 45775961 Downstream 42bp 21261 chr5 176083784 176083784 1 + G T SARC 176083785 + 176083765 176083805 41 AGGACAACCTGATTGTGGTGGCGGGAGTCTTCATGGGCATC AGGACAACCTGATTGTGGTTGCGGGAGTCTTCATGGGCATC < 41bp 0.406364650657023 0.736155963336404 NA NA prediction 0.472311926672808 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083785 chr5:176083784 synonymous SNV . 0 20 hm7G_associated_SNPs_23019 0 0 1 0 2 TSPAN17 chr5:176083701 3'AG 176083701 Downstream 84bp 21262 chr5 176083784 176083784 1 + G T SARC 176083785 + 176083765 176083805 41 AGGACAACCTGATTGTGGTGGCGGGAGTCTTCATGGGCATC AGGACAACCTGATTGTGGTTGCGGGAGTCTTCATGGGCATC < 41bp 0.406364650657023 0.736155963336404 NA NA prediction 0.472311926672808 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083785 chr5:176083784 synonymous SNV . 0 20 hm7G_associated_SNPs_23019 0 0 1 0 2 TSPAN17 chr5:176083817 5'GT 176083817 Upstream 34bp 21263 chrX 84519343 84519343 1 + G T UCEC 84519344 + 84519324 84519364 41 ATTAAAAATTGGCAGTGATGGTTCACAAGAAGATGCTAAAG ATTAAAAATTGGCAGTGATTGTTCACAAGAAGATGCTAAAG < 41bp 0.627674509196666 0.863828014290334 NA NA prediction 0.472307010187337 Functional Gain - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84519344 chrX:84519343 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23020 0 0 1 0 2 ZNF711 chrX:84519281 3'AG 84519281 Downstream 63bp 21264 chrX 84519343 84519343 1 + G T UCEC 84519344 + 84519324 84519364 41 ATTAAAAATTGGCAGTGATGGTTCACAAGAAGATGCTAAAG ATTAAAAATTGGCAGTGATTGTTCACAAGAAGATGCTAAAG < 41bp 0.627674509196666 0.863828014290334 NA NA prediction 0.472307010187337 Functional Gain - ZNF711 ENSG00000147180 CDS Human protein_coding chrX:84519344 chrX:84519343 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23020 0 0 1 0 2 ZNF711 chrX:84519436 5'GT 84519436 Upstream 94bp 21265 chr10 95275260 95275260 1 + G T LIHC 95275261 + 95275241 95275281 41 TTGAGTTGGAAAAGAAAACGGAAACAGCTGCTCATTCACTC TTGAGTTGGAAAAGAAAACTGAAACAGCTGCTCATTCACTC < 41bp 0.647083381552747 0.883230900028734 NA NA prediction 0.472295036951973 Functional Gain - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95275261 chr10:95275260 synonymous SNV . 0 20 hm7G_associated_SNPs_23021 0 0 1 0 2 CEP55 chr10:95275162 3'AG 95275162 Downstream 99bp 21266 chr10 95275260 95275260 1 + G T LIHC 95275261 + 95275241 95275281 41 TTGAGTTGGAAAAGAAAACGGAAACAGCTGCTCATTCACTC TTGAGTTGGAAAAGAAAACTGAAACAGCTGCTCATTCACTC < 41bp 0.647083381552747 0.883230900028734 NA NA prediction 0.472295036951973 Functional Gain - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95275261 chr10:95275260 synonymous SNV . 0 20 hm7G_associated_SNPs_23021 0 0 1 0 2 CEP55 chr10:95275312 5'GT 95275312 Upstream 53bp 21267 chr12 107048035 107048035 1 + G T LUAD 107048036 + 107048016 107048056 41 AACTATGAGATTGCAGAGGGGGTCTGCATCCCTCGCAGTGC AACTATGAGATTGCAGAGGTGGTCTGCATCCCTCGCAGTGC < 41bp 0.397510910804232 0.736142728811631 NA NA prediction 0.472285457623262 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107048036 chr12:107048035 nonsynonymous SNV 0.949 5 20 hm7G_associated_SNPs_23023 0 0 0 0 2 RFX4 chr12:107048006 3'AG 107048006 Downstream 30bp 21268 chr12 107048035 107048035 1 + G T LUAD 107048036 + 107048016 107048056 41 AACTATGAGATTGCAGAGGGGGTCTGCATCCCTCGCAGTGC AACTATGAGATTGCAGAGGTGGTCTGCATCCCTCGCAGTGC < 41bp 0.397510910804232 0.736142728811631 NA NA prediction 0.472285457623262 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107048036 chr12:107048035 nonsynonymous SNV 0.949 5 20 hm7G_associated_SNPs_23023 0 0 0 0 2 RFX4 chr12:107048129 5'GT 107048129 Upstream 95bp 21269 chr22 39445561 39445561 1 + G T CESC 39445562 + 39445542 39445582 41 CACCACTCACCTGTCTCCTGGAAGAGGGGCGTCTTCCGAAA CACCACTCACCTGTCTCCTTGAAGAGGGGCGTCTTCCGAAA < 41bp 0.398161980985398 0.736120615938999 NA NA prediction 0.472241231877998 Functional Gain - APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39445562 chr22:39445561 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23025 0 0 0 0 1 APOBEC3F chr22:39445586 5'GT 39445586 Upstream 26bp 21270 chr22 21336852 21336852 1 + G T LUAD 21336853 + 21336833 21336873 41 CGCCCTGCGACGAGTTCGTGGGTGCCCGGTACGGTGGGCTT CGCCCTGCGACGAGTTCGTTGGTGCCCGGTACGGTGGGCTT < 41bp 0.387222116599457 0.736115666040419 NA NA prediction 0.472231332080837 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21336853 chr22:21336852 synonymous SNV . 0 20 hm7G_associated_SNPs_23028 0 0 1 0 1 LZTR1 chr22:21336860 5'GT 21336860 Upstream 9bp 21271 chr7 92015842 92015842 1 + G T LUAD 92015843 + 92015823 92015863 41 TGCAAGTATGACTTTTGCTGGATTTGCCTTGAAGAGTGGAA TGCAAGTATGACTTTTGCTTGATTTGCCTTGAAGAGTGGAA < 41bp 0.406416187877353 0.736099151695987 NA NA prediction 0.472198303391973 Functional Gain - ANKIB1 ENSG00000001629 CDS Human protein_coding chr7:92015843 chr7:92015842 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23030 0 0 1 0 1 ANKIB1 chr7:92015823 3'AG 92015823 Downstream 20bp 21272 chr13 100909878 100909878 1 + G T LUAD 100909879 + 100909859 100909899 41 CATGATCAAGGCCTCAGCAGGTGGTGGTGGGAAAGGCATGC CATGATCAAGGCCTCAGCATGTGGTGGTGGGAAAGGCATGC < 41bp 0.419253146936629 0.736096713221548 NA NA prediction 0.472193426443095 Functional Gain - PCCA ENSG00000175198 CDS Human protein_coding chr13:100909879 chr13:100909878 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23031 0 0 1 0 2 PCCA chr13:100909849 3'AG 100909849 Downstream 30bp 21273 chr13 100909878 100909878 1 + G T LUAD 100909879 + 100909859 100909899 41 CATGATCAAGGCCTCAGCAGGTGGTGGTGGGAAAGGCATGC CATGATCAAGGCCTCAGCATGTGGTGGTGGGAAAGGCATGC < 41bp 0.419253146936629 0.736096713221548 NA NA prediction 0.472193426443095 Functional Gain - PCCA ENSG00000175198 CDS Human protein_coding chr13:100909879 chr13:100909878 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23031 0 0 1 0 2 PCCA chr13:100909927 5'GT 100909927 Upstream 50bp 21274 chr19 5668206 5668206 1 + G T LUSC 5668207 + 5668187 5668227 41 CCCCAGGCGGGGCCTCCCGGGGCCACCCCATCCCACACGGT CCCCAGGCGGGGCCTCCCGTGGCCACCCCATCCCACACGGT < 41bp 0.397150198280994 0.736090997639335 NA NA prediction 0.472181995278671 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5668207 chr19:5668206 synonymous SNV . 0 20 hm7G_associated_SNPs_23032 0 0 1 0 1 SAFB chr19:5668173 3'AG 5668173 Downstream 34bp 21275 chr21 43711216 43711216 1 + G T UCEC 43711217 + 43711197 43711237 41 CCTAGTTCCCCTGGAGATGGGAGTCTTTCTTCGGGAACACC CCTAGTTCCCCTGGAGATGTGAGTCTTTCTTCGGGAACACC < 41bp 0.390550316260614 0.736066266616839 NA NA prediction 0.472132533233678 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711217 chr21:43711216 stopgain 0.723 0 20 hm7G_associated_SNPs_23033 0 0 0 0 2 ABCG1 chr21:43711202 3'AG 43711202 Downstream 15bp 21276 chr21 43711216 43711216 1 + G T UCEC 43711217 + 43711197 43711237 41 CCTAGTTCCCCTGGAGATGGGAGTCTTTCTTCGGGAACACC CCTAGTTCCCCTGGAGATGTGAGTCTTTCTTCGGGAACACC < 41bp 0.390550316260614 0.736066266616839 NA NA prediction 0.472132533233678 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711217 chr21:43711216 stopgain 0.723 0 20 hm7G_associated_SNPs_23033 0 0 0 0 2 ABCG1 chr21:43711302 5'GT 43711302 Upstream 87bp 21277 chr2 128324372 128324372 1 + G T UCEC 128324373 + 128324353 128324393 41 TGCTACTTCAGCATGAAGAGGAACAAGAGGGACCAGTGCTG TGCTACTTCAGCATGAAGATGAACAAGAGGGACCAGTGCTG < 41bp 0.396798960275219 0.736064748448274 NA NA prediction 0.472129496896547 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128324373 chr2:128324372 nonsynonymous SNV 0.673 4 20 hm7G_associated_SNPs_23034 0 0 0 0 1 MYO7B chr2:128324402 5'GT 128324402 Upstream 31bp 21278 chr12 108105926 108105926 1 + G T OV 108105927 + 108105907 108105947 41 ACGAGAGAGGCTTGTTCTTGGGAGTGCAAGAAATTCATCTA ACGAGAGAGGCTTGTTCTTTGGAGTGCAAGAAATTCATCTA < 41bp 0.639280285610649 0.875333983743618 NA NA prediction 0.472107396265938 Functional Gain - PWP1 ENSG00000136045 CDS Human protein_coding chr12:108105927 chr12:108105926 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_23035 0 0 1 2 1 PWP1 chr12:108105888 3'AG 108105888 Downstream 39bp 21279 chr8 86354310 86354310 1 + G T UCEC 86354311 + 86354291 86354331 41 CTGAATCACAGTGCTGAGAGGGGGTCCTCTCCCTGGACCCT CTGAATCACAGTGCTGAGATGGGGTCCTCTCCCTGGACCCT < 41bp 0.649224831711268 0.885246851391236 NA NA prediction 0.472044039359936 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354311 chr8:86354310 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23039 0 0 0 0 2 CA3 chr8:86354302 3'AG 86354302 Downstream 9bp 21280 chr8 86354310 86354310 1 + G T UCEC 86354311 + 86354291 86354331 41 CTGAATCACAGTGCTGAGAGGGGGTCCTCTCCCTGGACCCT CTGAATCACAGTGCTGAGATGGGGTCCTCTCCCTGGACCCT < 41bp 0.649224831711268 0.885246851391236 NA NA prediction 0.472044039359936 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354311 chr8:86354310 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23039 0 0 0 0 2 CA3 chr8:86354344 5'GT 86354344 Upstream 35bp 21281 chrX 153006044 153006044 1 + G T STAD 153006045 + 153006025 153006065 41 CAGGCCCTACATGTCTGTGGGCTCCCTGCGTGACCAGGTGA CAGGCCCTACATGTCTGTGTGCTCCCTGCGTGACCAGGTGA < 41bp 0.656004771685575 0.892019648170771 NA NA prediction 0.472029752970391 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153006045 chrX:153006044 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23040 0 0 0 0 1 ABCD1 chrX:153006028 3'AG 153006028 Downstream 17bp 21282 chr18 9525765 9525765 1 + G T UCEC 9525766 + 9525746 9525786 41 ATCTGCAGGGTGGGATAAAGGATTTGTCTAAAGAAGAAAGA ATCTGCAGGGTGGGATAAATGATTTGTCTAAAGAAGAAAGA < 41bp 0.645708452423715 0.881716103402491 NA NA prediction 0.472015301957551 Functional Gain - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9525766 chr18:9525765 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23041 0 0 1 0 2 RALBP1 chr18:9525718 3'AG 9525718 Downstream 48bp 21283 chr18 9525765 9525765 1 + G T UCEC 9525766 + 9525746 9525786 41 ATCTGCAGGGTGGGATAAAGGATTTGTCTAAAGAAGAAAGA ATCTGCAGGGTGGGATAAATGATTTGTCTAAAGAAGAAAGA < 41bp 0.645708452423715 0.881716103402491 NA NA prediction 0.472015301957551 Functional Gain - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9525766 chr18:9525765 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23041 0 0 1 0 2 RALBP1 chr18:9525849 5'GT 9525849 Upstream 85bp 21284 chr7 143080351 143080351 1 + G T LUAD 143080352 + 143080332 143080372 41 TTCACCTATGCCCAGCAGAGGGAGAAGCCCCGAGTGCAGGA TTCACCTATGCCCAGCAGATGGAGAAGCCCCGAGTGCAGGA < 41bp 0.655578313338729 0.89158340532279 NA NA prediction 0.472010183968123 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143080352 chr7:143080351 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_23042 0 0 1 0 1 ZYX chr7:143080415 5'GT 143080415 Upstream 65bp 21285 chr5 169535349 169535349 1 + G T LUAD 169535350 + 169535330 169535370 41 TATGACAGCCTATGTGAGCGGGGGGAGCCCCACGAGCCACC TATGACAGCCTATGTGAGCTGGGGGAGCCCCACGAGCCACC < 41bp 0.6429767213581 0.878974745694376 NA NA prediction 0.471996048672552 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535350 chr5:169535349 nonsynonymous SNV 0.004 5 20 hm7G_associated_SNPs_23044 0 0 0 0 1 FOXI1 chr5:169535338 3'AG 169535338 Downstream 12bp 21286 chrX 10096135 10096135 1 + G T UCEC 10096136 + 10096116 10096156 41 AACCATCAAGGACGCGGGAGGCTGGGTGTGCAGGAGAGAGC AACCATCAAGGACGCGGGATGCTGGGTGTGCAGGAGAGAGC < 41bp 0.657012590816218 0.893002518077331 NA NA prediction 0.471979854522226 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10096136 chrX:10096135 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_23047 0 0 0 0 1 WWC3 chrX:10096201 5'GT 10096201 Upstream 67bp 21287 chr2 121554949 121554949 1 + G T LUSC 121554950 + 121554930 121554970 41 AAGCAAGAAGCCAAAAGTGGGATCCTGGAGGCCGCTGGCTT AAGCAAGAAGCCAAAAGTGTGATCCTGGAGGCCGCTGGCTT < 41bp 0.412431896810714 0.735989878205125 NA NA prediction 0.471979756410251 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121554950 chr2:121554949 nonsynonymous SNV 0.858 0 20 hm7G_associated_SNPs_23048 0 0 0 0 1 GLI2 chr2:121555044 5'GT 121555044 Upstream 96bp 21288 chr10 7771952 7771952 1 + G T LUAD 7771953 + 7771933 7771973 41 AAATTCAGAAAAACGTTAAGGAGAACATCCAAGACAATATC AAATTCAGAAAAACGTTAATGAGAACATCCAAGACAATATC < 41bp 0.420636895520844 0.735984221911225 NA NA prediction 0.471968443822451 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7771953 chr10:7771952 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_23049 0 0 0 0 1 ITIH2 chr10:7771915 3'AG 7771915 Downstream 38bp 21289 chr1 175049351 175049351 1 + G T LUSC 175049352 + 175049332 175049372 41 ACACGGAGGATTCTCTGCTGGTGAGCTGGGAGCCCTCCAGC ACACGGAGGATTCTCTGCTTGTGAGCTGGGAGCCCTCCAGC < 41bp 0.388325852648459 0.735982677964061 NA NA prediction 0.471965355928121 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175049352 chr1:175049351 synonymous SNV . 0 20 hm7G_associated_SNPs_23050 0 0 0 0 1 TNN chr1:175049299 3'AG 175049299 Downstream 53bp 21290 chr3 179408031 179408031 1 + G T COAD 179408032 + 179408012 179408052 41 TTTTGTTTTCTTTTCAGAAGGTAAGAGGGGCGTCTGGTGGA TTTTGTTTTCTTTTCAGAATGTAAGAGGGGCGTCTGGTGGA < 41bp 0.628429852364769 0.864396453543874 NA NA prediction 0.471933202358209 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179408032 chr3:179408031 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_23052 0 0 1 0 2 USP13 chr3:179408029 3'AG 179408029 Downstream 3bp 21291 chr3 179408031 179408031 1 + G T COAD 179408032 + 179408012 179408052 41 TTTTGTTTTCTTTTCAGAAGGTAAGAGGGGCGTCTGGTGGA TTTTGTTTTCTTTTCAGAATGTAAGAGGGGCGTCTGGTGGA < 41bp 0.628429852364769 0.864396453543874 NA NA prediction 0.471933202358209 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179408032 chr3:179408031 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_23052 0 0 1 0 2 USP13 chr3:179408089 5'GT 179408089 Upstream 59bp 21292 chr6 3127546 3127546 1 + G T LUAD 3127547 + 3127527 3127567 41 TCTTCACGGTGGTCGCCTGGGATCCTCGAGGCTATGGACAT TCTTCACGGTGGTCGCCTGTGATCCTCGAGGCTATGGACAT < 41bp 0.653520488420781 0.889485371359933 NA NA prediction 0.471929765878303 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3127547 chr6:3127546 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_23053 0 0 1 0 2 BPHL chr6:3127476 3'AG 3127476 Downstream 71bp 21293 chr6 3127546 3127546 1 + G T LUAD 3127547 + 3127527 3127567 41 TCTTCACGGTGGTCGCCTGGGATCCTCGAGGCTATGGACAT TCTTCACGGTGGTCGCCTGTGATCCTCGAGGCTATGGACAT < 41bp 0.653520488420781 0.889485371359933 NA NA prediction 0.471929765878303 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3127547 chr6:3127546 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_23053 0 0 1 0 2 BPHL chr6:3127642 5'GT 3127642 Upstream 97bp 21294 chr22 18894238 18894238 1 + G T STAD 18894239 + 18894219 18894259 41 CCTACAGAACGAGCATCGAGGTGCGCGGGGGCAGCGGGAGG CCTACAGAACGAGCATCGATGTGCGCGGGGGCAGCGGGAGG < 41bp 0.646299489554582 0.882259173791404 NA NA prediction 0.471919368473643 Functional Gain - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18894239 chr22:18894238 nonsynonymous SNV 0.979 0 20 hm7G_associated_SNPs_23054 0 0 0 0 1 DGCR6 chr22:18894238 5'GT 18894238 Upstream 1bp 21295 chr12 8998050 8998050 1 + G T UCEC 8998051 + 8998031 8998071 41 TCTTTAGTTAATAGGGAAAGGAAGTTTGGTGATGGAGGGGC TCTTTAGTTAATAGGGAAATGAAGTTTGGTGATGGAGGGGC < 41bp 0.649260477100017 0.885213162301305 NA NA prediction 0.471905370402576 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8998051 chr12:8998050 stopgain 0.883 0 20 hm7G_associated_SNPs_23055 0 0 0 0 2 A2ML1 chr12:8998038 3'AG 8998038 Downstream 13bp 21296 chr12 8998050 8998050 1 + G T UCEC 8998051 + 8998031 8998071 41 TCTTTAGTTAATAGGGAAAGGAAGTTTGGTGATGGAGGGGC TCTTTAGTTAATAGGGAAATGAAGTTTGGTGATGGAGGGGC < 41bp 0.649260477100017 0.885213162301305 NA NA prediction 0.471905370402576 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:8998051 chr12:8998050 stopgain 0.883 0 20 hm7G_associated_SNPs_23055 0 0 0 0 2 A2ML1 chr12:8998098 5'GT 8998098 Upstream 49bp 21297 chr4 15443809 15443809 1 + G T UCEC 15443810 + 15443790 15443830 41 AGGTTTGAGAGGTAAGACTGGACCGCTAGGTCTTGCCGGTG AGGTTTGAGAGGTAAGACTTGACCGCTAGGTCTTGCCGGTG < 41bp 0.620350822549781 0.856271250809378 NA NA prediction 0.471840856519193 Functional Gain - C1QTNF7 ENSG00000163145 CDS Human protein_coding chr4:15443810 chr4:15443809 stopgain 0.995 1 20 hm7G_associated_SNPs_23058 0 0 0 0 1 C1QTNF7 chr4:15443792 3'AG 15443792 Downstream 18bp 21298 chr10 18292278 18292278 1 + G T LUAD 18292279 + 18292259 18292299 41 TGTTCTTATATTTATCCTTGGTTGAAATGGTAAGCTTGGTG TGTTCTTATATTTATCCTTTGTTGAAATGGTAAGCTTGGTG < 41bp 0.426145421726497 0.735917118662817 NA NA prediction 0.471834237325633 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18292279 chr10:18292278 nonsynonymous SNV 0.618 4 20 hm7G_associated_SNPs_23059 0 0 0 0 1 SLC39A12 chr10:18292287 5'GT 18292287 Upstream 10bp 21299 chr12 56629017 56629017 1 + G A SKCM 56629018 + 56628998 56629038 41 TGCTGCTGCTGCGGCTCCTGGGACCTCGTCTACTACGGCCC TGCTGCTGCTGCGGCTCCTAGGACCTCGTCTACTACGGCCC < 41bp 0.500719571032427 0.736633673309951 NA NA prediction 0.471828204555047 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629018 chr12:56629017 synonymous SNV . 0 20 hm7G_associated_SNPs_23060 0 0 1 0 2 SLC39A5 chr12:56628941 3'AG 56628941 Downstream 77bp 21300 chr12 56629017 56629017 1 + G A SKCM 56629018 + 56628998 56629038 41 TGCTGCTGCTGCGGCTCCTGGGACCTCGTCTACTACGGCCC TGCTGCTGCTGCGGCTCCTAGGACCTCGTCTACTACGGCCC < 41bp 0.500719571032427 0.736633673309951 NA NA prediction 0.471828204555047 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629018 chr12:56629017 synonymous SNV . 0 20 hm7G_associated_SNPs_23060 0 0 1 0 2 SLC39A5 chr12:56629110 5'GT 56629110 Upstream 94bp 21301 chr6 110036378 110036378 1 + G T UCEC 110036379 + 110036359 110036399 41 TTGGTCATAATTGATGACAGGGTAAGTATCCTCCAAACCTG TTGGTCATAATTGATGACATGGTAAGTATCCTCCAAACCTG < 41bp 0.419251512415802 0.735911055470037 NA NA prediction 0.471822110940075 Functional Gain - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110036379 chr6:110036378 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_23061 0 0 0 0 1 FIG4 chr6:110036281 3'AG 110036281 Downstream 98bp 21302 chr11 9549151 9549151 1 + G T LUSC 9549152 + 9549132 9549172 41 AAGGAGAAACGCCAGGGTTGGATGATTAATCCTCAGAACAA AAGGAGAAACGCCAGGGTTTGATGATTAATCCTCAGAACAA < 41bp 0.621797830306672 0.857679695037471 NA NA prediction 0.471763729461598 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9549152 chr11:9549151 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23064 0 0 1 0 1 ZNF143 chr11:9549077 3'AG 9549077 Downstream 75bp 21303 chr10 115662315 115662315 1 + G T GBM 115662316 + 115662296 115662336 41 GTAACATGGGACAAAAAAAGGAATTTACTTTATGTTGCAGA GTAACATGGGACAAAAAAATGAATTTACTTTATGTTGCAGA < 41bp 0.417743265325274 0.735860007487859 NA NA prediction 0.471720014975718 Functional Gain - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115662316 chr10:115662315 nonsynonymous SNV 0.564 2 20 hm7G_associated_SNPs_23067 0 0 1 0 2 NHLRC2 chr10:115662230 3'AG 115662230 Downstream 86bp 21304 chr10 115662315 115662315 1 + G T GBM 115662316 + 115662296 115662336 41 GTAACATGGGACAAAAAAAGGAATTTACTTTATGTTGCAGA GTAACATGGGACAAAAAAATGAATTTACTTTATGTTGCAGA < 41bp 0.417743265325274 0.735860007487859 NA NA prediction 0.471720014975718 Functional Gain - NHLRC2 ENSG00000196865 CDS Human protein_coding chr10:115662316 chr10:115662315 nonsynonymous SNV 0.564 2 20 hm7G_associated_SNPs_23067 0 0 1 0 2 NHLRC2 chr10:115662352 5'GT 115662352 Upstream 38bp 21305 chr5 110784892 110784892 1 + G T COAD 110784893 + 110784873 110784913 41 GACAGTATGTGGAACCCCAGGGTACTGCGGTATGCTCTTTA GACAGTATGTGGAACCCCATGGTACTGCGGTATGCTCTTTA < 41bp 0.403882537936817 0.735857854421219 NA NA prediction 0.471715708842438 Functional Gain - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110784893 chr5:110784892 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23069 0 0 0 0 2 CAMK4 chr5:110784827 3'AG 110784827 Downstream 66bp 21306 chr5 110784892 110784892 1 + G T COAD 110784893 + 110784873 110784913 41 GACAGTATGTGGAACCCCAGGGTACTGCGGTATGCTCTTTA GACAGTATGTGGAACCCCATGGTACTGCGGTATGCTCTTTA < 41bp 0.403882537936817 0.735857854421219 NA NA prediction 0.471715708842438 Functional Gain - CAMK4 ENSG00000152495 CDS Human protein_coding chr5:110784893 chr5:110784892 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23069 0 0 0 0 2 CAMK4 chr5:110784901 5'GT 110784901 Upstream 10bp 21307 chr5 7897226 7897226 1 + G T UCEC 7897227 + 7897207 7897247 41 GGATCTTAACTCATCTAAAGGTTTCCTTCTCAAGAGATGCT GGATCTTAACTCATCTAAATGTTTCCTTCTCAAGAGATGCT < 41bp 0.416135889246573 0.73585604667483 NA NA prediction 0.471712093349659 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7897227 chr5:7897226 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_23070 0 0 1 0 1 MTRR chr5:7897178 3'AG 7897178 Downstream 49bp 21308 chr2 198670012 198670012 1 + G T rs558575457 198670013 + 198669993 198670033 41 CCCCAGCGGACAGCGAGGCGGGCCTCCTGGAGGCAGCACGG CCCCAGCGGACAGCGAGGCTGGCCTCCTGGAGGCAGCACGG < 41bp 0.498425408457946 0.735836921648563 NA NA prediction 0.471673843297126 Functional Gain - PLCL1 ENSG00000115896 CDS Human protein_coding chr2:198670013 chr2:198670012 synonymous SNV . 0 20 hm7G_associated_SNPs_23072 0 0 0 0 1 PLCL1 chr2:198670063 5'GT 198670063 Upstream 52bp 21309 chr8 97978195 97978195 1 + G T LUAD 97978196 + 97978176 97978216 41 GTGGACATCTGGACAGCTGGGATGTTGGGCAGGGTGCCATG GTGGACATCTGGACAGCTGTGATGTTGGGCAGGGTGCCATG < 41bp 0.64405492676035 0.879881431791291 NA NA prediction 0.471653010061881 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97978196 chr8:97978195 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23073 0 0 1 0 2 CPQ chr8:97978163 3'AG 97978163 Downstream 33bp 21310 chr8 97978195 97978195 1 + G T LUAD 97978196 + 97978176 97978216 41 GTGGACATCTGGACAGCTGGGATGTTGGGCAGGGTGCCATG GTGGACATCTGGACAGCTGTGATGTTGGGCAGGGTGCCATG < 41bp 0.64405492676035 0.879881431791291 NA NA prediction 0.471653010061881 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97978196 chr8:97978195 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23073 0 0 1 0 2 CPQ chr8:97978274 5'GT 97978274 Upstream 80bp 21311 chr2 101096958 101096958 1 + G T OV 101096959 + 101096939 101096979 41 GTGCCTCATTTCCTTGCAGGGCTCGGGGACTGCTGCAGTGG GTGCCTCATTTCCTTGCAGTGCTCGGGGACTGCTGCAGTGG < 41bp 0.634694802777723 0.870497731670435 NA NA prediction 0.471605857785424 Functional Gain - NMS ENSG00000204640 CDS Human protein_coding chr2:101096959 chr2:101096958 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_23074 0 0 0 0 2 NMS chr2:101096958 3'AG 101096958 Downstream 1bp 21312 chr2 101096958 101096958 1 + G T OV 101096959 + 101096939 101096979 41 GTGCCTCATTTCCTTGCAGGGCTCGGGGACTGCTGCAGTGG GTGCCTCATTTCCTTGCAGTGCTCGGGGACTGCTGCAGTGG < 41bp 0.634694802777723 0.870497731670435 NA NA prediction 0.471605857785424 Functional Gain - NMS ENSG00000204640 CDS Human protein_coding chr2:101096959 chr2:101096958 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_23074 0 0 0 0 2 NMS chr2:101096993 5'GT 101096993 Upstream 36bp 21313 chr10 82269181 82269181 1 + G T BLCA 82269182 + 82269162 82269202 41 AGCAACATCAAGTCCTACCGGGACGATATCGATCTGCAAAA AGCAACATCAAGTCCTACCTGGACGATATCGATCTGCAAAA < 41bp 0.38885389471744 0.735788084954521 NA NA prediction 0.471576169909041 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82269182 chr10:82269181 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23076 0 0 1 0 1 TSPAN14 chr10:82269227 5'GT 82269227 Upstream 47bp 21314 chr17 60657533 60657533 1 + G T OV 60657534 + 60657514 60657554 41 ACATCTTTTGGGTAGAGGAGGTTTCAGTGAAGTTTACAAGG ACATCTTTTGGGTAGAGGATGTTTCAGTGAAGTTTACAAGG < 41bp 0.415942457166033 0.735777559660007 NA NA prediction 0.471555119320014 Functional Gain - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60657534 chr17:60657533 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23078 0 0 0 0 2 TLK2 chr17:60657472 3'AG 60657472 Downstream 62bp 21315 chr17 60657533 60657533 1 + G T OV 60657534 + 60657514 60657554 41 ACATCTTTTGGGTAGAGGAGGTTTCAGTGAAGTTTACAAGG ACATCTTTTGGGTAGAGGATGTTTCAGTGAAGTTTACAAGG < 41bp 0.415942457166033 0.735777559660007 NA NA prediction 0.471555119320014 Functional Gain - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60657534 chr17:60657533 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23078 0 0 0 0 2 TLK2 chr17:60657553 5'GT 60657553 Upstream 21bp 21316 chr1 35847276 35847276 1 + G T LIHC 35847277 + 35847257 35847297 41 TGGGGGTTACTGTTACAGTGGGTCGGGACAATGCCACATGC TGGGGGTTACTGTTACAGTTGGTCGGGACAATGCCACATGC < 41bp 0.402818793404722 0.735771861089175 NA NA prediction 0.47154372217835 Functional Gain - ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35847277 chr1:35847276 nonsynonymous SNV 0.965 3 20 hm7G_associated_SNPs_23079 0 0 1 0 1 ZMYM4 chr1:35847359 5'GT 35847359 Upstream 84bp 21317 chr6 111345466 111345466 1 + G T COAD 111345467 + 111345447 111345487 41 TCATTGGATCTGGTTCTGAGGAGGACACACCTGGCATCGGA TCATTGGATCTGGTTCTGATGAGGACACACCTGGCATCGGA < 41bp 0.639059528169938 0.87482984509785 NA NA prediction 0.471540633855825 Functional Gain - RPF2 ENSG00000197498 CDS Human protein_coding chr6:111345467 chr6:111345466 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_23080 0 0 1 0 2 RPF2 chr6:111345386 3'AG 111345386 Downstream 81bp 21318 chr6 111345466 111345466 1 + G T COAD 111345467 + 111345447 111345487 41 TCATTGGATCTGGTTCTGAGGAGGACACACCTGGCATCGGA TCATTGGATCTGGTTCTGATGAGGACACACCTGGCATCGGA < 41bp 0.639059528169938 0.87482984509785 NA NA prediction 0.471540633855825 Functional Gain - RPF2 ENSG00000197498 CDS Human protein_coding chr6:111345467 chr6:111345466 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_23080 0 0 1 0 2 RPF2 chr6:111345530 5'GT 111345530 Upstream 65bp 21319 chr13 37007342 37007342 1 + G T COAD 37007343 + 37007323 37007363 41 ACTGCAAATGGGCAGTACAGGAGGACCTGTGGCCAGGTAAT ACTGCAAATGGGCAGTACATGAGGACCTGTGGCCAGGTAAT < 41bp 0.65149042552366 0.887258485996434 NA NA prediction 0.471536120945548 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37007343 chr13:37007342 nonsynonymous SNV 0.879 2 20 hm7G_associated_SNPs_23081 0 0 0 1 1 CCNA1 chr13:37007358 5'GT 37007358 Upstream 17bp 21320 chr10 86012730 86012730 1 + G T UCEC 86012731 + 86012711 86012751 41 TACGACTATGAGCCACTGGGGACATGCTGCACCCTGGACTA TACGACTATGAGCCACTGGTGACATGCTGCACCCTGGACTA < 41bp 0.39405376360586 0.735758289509382 NA NA prediction 0.471516579018764 Functional Gain - RGR ENSG00000148604 CDS Human protein_coding chr10:86012731 chr10:86012730 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_23082 0 0 0 0 1 RGR chr10:86012766 5'GT 86012766 Upstream 37bp 21321 chr4 7774715 7774715 1 - C A BLCA 7774714 - 7774694 7774734 41 GGAAGCCGCAGGCGATCCTGGAGGAGAAGCTGAAGCAGCTG GGAAGCCGCAGGCGATCCTTGAGGAGAAGCTGAAGCAGCTG < 41bp 0.388815746080442 0.735758255046793 NA NA prediction 0.471516510093587 Functional Gain - AFAP1 ENSG00000196526 CDS Human protein_coding chr4:7774714 chr4:7774715 synonymous SNV . 0 20 hm7G_associated_SNPs_23083 0 0 0 0 1 AFAP1 chr4:7774737 3'AG 7774737 Downstream 23bp 21322 chr19 41628732 41628732 1 + G T STAD 41628733 + 41628713 41628753 41 CTCTACCAATGCAGGAGAAGGAGGACCCACTGAGCCACTTC CTCTACCAATGCAGGAGAATGAGGACCCACTGAGCCACTTC < 41bp 0.402096061496831 0.735744170135743 NA NA prediction 0.471488340271486 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41628733 chr19:41628732 nonsynonymous SNV 0.050 0 20 hm7G_associated_SNPs_23086 0 0 0 1 2 CYP2F1 chr19:41628727 3'AG 41628727 Downstream 6bp 21323 chr19 41628732 41628732 1 + G T STAD 41628733 + 41628713 41628753 41 CTCTACCAATGCAGGAGAAGGAGGACCCACTGAGCCACTTC CTCTACCAATGCAGGAGAATGAGGACCCACTGAGCCACTTC < 41bp 0.402096061496831 0.735744170135743 NA NA prediction 0.471488340271486 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41628733 chr19:41628732 nonsynonymous SNV 0.050 0 20 hm7G_associated_SNPs_23086 0 0 0 1 2 CYP2F1 chr19:41628810 5'GT 41628810 Upstream 79bp 21324 chr7 143018914 143018914 1 + G T LAML 143018915 + 143018895 143018935 41 TCGCCCTGACTGCGGGCCTGGGCAGTGGCATCCCCGTGGGG TCGCCCTGACTGCGGGCCTTGGCAGTGGCATCCCCGTGGGG < 41bp 0.380308605823873 0.73574090496613 NA NA prediction 0.47148180993226 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018915 chr7:143018914 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_23087 0 0 0 0 1 CLCN1 chr7:143018941 5'GT 143018941 Upstream 28bp 21325 chr10 85973041 85973041 1 + G T STAD 85973042 + 85973022 85973062 41 CCCTAGAGGTGCAGGCCAAGGACCGGGGCTCCCCATCCTTC CCCTAGAGGTGCAGGCCAATGACCGGGGCTCCCCATCCTTC < 41bp 0.387554171937547 0.735729645277644 NA NA prediction 0.471459290555287 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85973042 chr10:85973041 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23089 0 0 0 0 1 CDHR1 chr10:85973104 5'GT 85973104 Upstream 64bp 21326 chr2 37594426 37594426 1 + G T LUSC 37594427 + 37594407 37594447 41 CCAGCTGATCTTCTTTGATGGTGAAGAGGCTTTTCTTCACT CCAGCTGATCTTCTTTGATTGTGAAGAGGCTTTTCTTCACT < 41bp 0.410341690302009 0.73572160690521 NA NA prediction 0.47144321381042 Functional Gain - QPCT ENSG00000115828 CDS Human protein_coding chr2:37594427 chr2:37594426 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23090 0 0 1 0 1 QPCT chr2:37594375 3'AG 37594375 Downstream 52bp 21327 chr17 8170432 8170432 1 + G T UCEC 8170433 + 8170413 8170453 41 AGGAGACGAGTTTCCAGCTGGACCGGCTACAGGCAGAGCCT AGGAGACGAGTTTCCAGCTTGACCGGCTACAGGCAGAGCCT < 41bp 0.384764572708782 0.735716237207612 NA NA prediction 0.471432474415223 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170433 chr17:8170432 synonymous SNV . 0 20 hm7G_associated_SNPs_23091 0 0 1 0 1 PFAS chr17:8170346 3'AG 8170346 Downstream 87bp 21328 chr4 119176789 119176789 1 + G T BRCA 119176790 + 119176770 119176810 41 ACTATCGAGATCACAACGTGGAACTCTCAAAGCTGCTGCAC ACTATCGAGATCACAACGTTGAACTCTCAAAGCTGCTGCAC < 41bp 0.423459295268833 0.735667073988149 NA NA prediction 0.471334147976297 Functional Gain - NDST3 ENSG00000164100 CDS Human protein_coding chr4:119176790 chr4:119176789 synonymous SNV . 0 20 hm7G_associated_SNPs_23096 0 0 0 0 1 NDST3 chr4:119176748 3'AG 119176748 Downstream 42bp 21329 chr20 43936867 43936867 1 + G T BRCA 43936868 + 43936848 43936888 41 CAGAGCGAAGCCGACAGGCGGAGCCTCCCGGGCACTTGGAC CAGAGCGAAGCCGACAGGCTGAGCCTCCCGGGCACTTGGAC < 41bp 0.385974883148697 0.735665820672298 NA NA prediction 0.471331641344595 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936868 chr20:43936867 nonsynonymous SNV 0.698 0 20 hm7G_associated_SNPs_23097 0 0 0 0 2 RBPJL chr20:43936783 3'AG 43936783 Downstream 85bp 21330 chr20 43936867 43936867 1 + G T BRCA 43936868 + 43936848 43936888 41 CAGAGCGAAGCCGACAGGCGGAGCCTCCCGGGCACTTGGAC CAGAGCGAAGCCGACAGGCTGAGCCTCCCGGGCACTTGGAC < 41bp 0.385974883148697 0.735665820672298 NA NA prediction 0.471331641344595 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43936868 chr20:43936867 nonsynonymous SNV 0.698 0 20 hm7G_associated_SNPs_23097 0 0 0 0 2 RBPJL chr20:43936891 5'GT 43936891 Upstream 25bp 21331 chrX 65409587 65409587 1 + G T LUAD 65409588 + 65409568 65409608 41 TGTGTGCACAGAAACGTGTGGCCTGGCACTTGTTTGGCATG TGTGTGCACAGAAACGTGTTGCCTGGCACTTGTTTGGCATG < 41bp 0.39358980588181 0.735647497346586 NA NA prediction 0.471294994693173 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65409588 chrX:65409587 synonymous SNV . 0 20 hm7G_associated_SNPs_23099 0 0 1 0 1 HEPH chrX:65409526 3'AG 65409526 Downstream 62bp 21332 chr6 35199528 35199528 1 + G T KIRP 35199529 + 35199509 35199549 41 CGAGTGTGCCGAGGGCAACGGCGGCTGTCAGCAGAGCTGTG CGAGTGTGCCGAGGGCAACTGCGGCTGTCAGCAGAGCTGTG < 41bp 0.651988373989729 0.887604615579935 NA NA prediction 0.471232483180411 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35199529 chr6:35199528 nonsynonymous SNV 0.783 5 20 hm7G_associated_SNPs_23100 0 0 0 0 1 SCUBE3 chr6:35199502 3'AG 35199502 Downstream 27bp 21333 chr12 3659113 3659113 1 + G T UCEC 3659114 + 3659094 3659134 41 CATCACAGGAAATGCTGAAGGATGAGGTGCGGACTCTCACT CATCACAGGAAATGCTGAATGATGAGGTGCGGACTCTCACT < 41bp 0.650402225090962 0.886006759337921 NA NA prediction 0.471209068493916 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3659114 chr12:3659113 nonsynonymous SNV 0.927 4 20 hm7G_associated_SNPs_23102 0 0 0 0 1 PRMT8 chr12:3659102 3'AG 3659102 Downstream 12bp 21334 chr16 70170227 70170227 1 + G T UCEC 70170228 + 70170208 70170248 41 GCGAGTCTCCTGCAGTGCAGGGCTACTTTGTCCTGGCAGGA GCGAGTCTCCTGCAGTGCATGGCTACTTTGTCCTGGCAGGA < 41bp 0.384757671625245 0.735586421615187 NA NA prediction 0.471172843230373 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70170228 chr16:70170227 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_23105 0 0 1 0 1 PDPR chr16:70170289 5'GT 70170289 Upstream 63bp 21335 chr14 94563303 94563303 1 + G T LUAD 94563304 + 94563284 94563324 41 ATGGGAAAGGAGAGTGGATGGGACTCAGGTGGGTACTGCAC ATGGGAAAGGAGAGTGGATTGGACTCAGGTGGGTACTGCAC < 41bp 0.654610233858204 0.890189693974668 NA NA prediction 0.471158920232928 Functional Gain - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94563304 chr14:94563303 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_23106 0 0 1 0 2 IFI27L1 chr14:94563233 3'AG 94563233 Downstream 71bp 21336 chr14 94563303 94563303 1 + G T LUAD 94563304 + 94563284 94563324 41 ATGGGAAAGGAGAGTGGATGGGACTCAGGTGGGTACTGCAC ATGGGAAAGGAGAGTGGATTGGACTCAGGTGGGTACTGCAC < 41bp 0.654610233858204 0.890189693974668 NA NA prediction 0.471158920232928 Functional Gain - IFI27L1 ENSG00000165948 CDS Human protein_coding chr14:94563304 chr14:94563303 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_23106 0 0 1 0 2 IFI27L1 chr14:94563311 5'GT 94563311 Upstream 9bp 21337 chrX 80532666 80532666 1 + G T SARC 80532667 + 80532647 80532687 41 CAATGAAAGCCAGTATCGCGGGGTAAGAAAACAATTTAAAT CAATGAAAGCCAGTATCGCTGGGTAAGAAAACAATTTAAAT < 41bp 0.421936124877287 0.73557817318665 NA NA prediction 0.4711563463733 Functional Gain - SH3BGRL ENSG00000131171 CDS Human protein_coding chrX:80532667 chrX:80532666 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_23107 0 0 0 0 1 SH3BGRL chrX:80532668 5'GT 80532668 Upstream 3bp 21338 chr11 2592596 2592596 1 + G T UCEC 2592597 + 2592577 2592617 41 CATGGTGGTCCTCTGCGTGGGCTCCAAGGGGCAGGTGTTTG CATGGTGGTCCTCTGCGTGTGCTCCAAGGGGCAGGTGTTTG < 41bp 0.395712358991442 0.735557302849756 NA NA prediction 0.471114605699511 Functional Gain - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2592597 chr11:2592596 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23109 0 0 0 0 2 KCNQ1 chr11:2592555 3'AG 2592555 Downstream 42bp 21339 chr11 2592596 2592596 1 + G T UCEC 2592597 + 2592577 2592617 41 CATGGTGGTCCTCTGCGTGGGCTCCAAGGGGCAGGTGTTTG CATGGTGGTCCTCTGCGTGTGCTCCAAGGGGCAGGTGTTTG < 41bp 0.395712358991442 0.735557302849756 NA NA prediction 0.471114605699511 Functional Gain - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2592597 chr11:2592596 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23109 0 0 0 0 2 KCNQ1 chr11:2592633 5'GT 2592633 Upstream 38bp 21340 chr5 76709122 76709122 1 + G T UCEC 76709123 + 76709103 76709143 41 CCGCTTTCTTTCTTGGAAAGGAAAGAGTAAAGGTAGGATTT CCGCTTTCTTTCTTGGAAATGAAAGAGTAAAGGTAGGATTT < 41bp 0.414659733609897 0.735554977469205 NA NA prediction 0.471109954938409 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76709123 chr5:76709122 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23110 0 0 0 0 1 PDE8B chr5:76709134 5'GT 76709134 Upstream 13bp 21341 chr19 35786543 35786543 1 + G T LUAD 35786544 + 35786524 35786564 41 GGGGGTCACTGGGGTGCCTGGATGCCCTCGTCCATCTCGGC GGGGGTCACTGGGGTGCCTTGATGCCCTCGTCCATCTCGGC < 41bp 0.380332477090284 0.735480025133532 NA NA prediction 0.470960050267063 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35786544 chr19:35786543 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23113 0 0 0 0 1 MAG chr19:35786516 3'AG 35786516 Downstream 28bp 21342 chr7 112096997 112096997 1 + G T UCEC 112096998 + 112096978 112097018 41 AAGGCAAGCAGCTCTTGAAGGTATTAAAAATGCACTGGCTT AAGGCAAGCAGCTCTTGAATGTATTAAAAATGCACTGGCTT < 41bp 0.417066506240523 0.735467025404918 NA NA prediction 0.470934050809837 Functional Gain - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112096998 chr7:112096997 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23114 0 0 1 5 2 IFRD1 chr7:112096969 3'AG 112096969 Downstream 29bp 21343 chr7 112096997 112096997 1 + G T UCEC 112096998 + 112096978 112097018 41 AAGGCAAGCAGCTCTTGAAGGTATTAAAAATGCACTGGCTT AAGGCAAGCAGCTCTTGAATGTATTAAAAATGCACTGGCTT < 41bp 0.417066506240523 0.735467025404918 NA NA prediction 0.470934050809837 Functional Gain - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112096998 chr7:112096997 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23114 0 0 1 5 2 IFRD1 chr7:112097093 5'GT 112097093 Upstream 97bp 21344 chr11 111414669 111414669 1 + G T LUAD 111414670 + 111414650 111414690 41 CAGCCAGTCTGCCGGGGAGGGACACAGAGGCCTTGTTATAA CAGCCAGTCTGCCGGGGAGTGACACAGAGGCCTTGTTATAA < 41bp 0.41781642154024 0.735446467536657 NA NA prediction 0.470892935073313 Functional Gain - LAYN ENSG00000204381 CDS Human protein_coding chr11:111414670 chr11:111414669 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_23115 0 0 0 0 1 LAYN chr11:111414648 3'AG 111414648 Downstream 22bp 21345 chr15 77310810 77310810 1 + G T COAD 77310811 + 77310791 77310831 41 TTTGCAGGGCCCAGGCGGAGGAGCGGTACGGGAAGGAGCTG TTTGCAGGGCCCAGGCGGATGAGCGGTACGGGAAGGAGCTG < 41bp 0.660767122925834 0.896158275473141 NA NA prediction 0.470782305094614 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77310811 chr15:77310810 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_23119 0 0 0 1 2 PSTPIP1 chr15:77310798 3'AG 77310798 Downstream 13bp 21346 chr15 77310810 77310810 1 + G T COAD 77310811 + 77310791 77310831 41 TTTGCAGGGCCCAGGCGGAGGAGCGGTACGGGAAGGAGCTG TTTGCAGGGCCCAGGCGGATGAGCGGTACGGGAAGGAGCTG < 41bp 0.660767122925834 0.896158275473141 NA NA prediction 0.470782305094614 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77310811 chr15:77310810 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_23119 0 0 0 1 2 PSTPIP1 chr15:77310872 5'GT 77310872 Upstream 63bp 21347 chr11 124739492 124739492 1 + G T COAD 124739493 + 124739473 124739513 41 AAGACTCAAGGAAGAGGAAGGAAGGATCACGGTGAGGGCGG AAGACTCAAGGAAGAGGAATGAAGGATCACGGTGAGGGCGG < 41bp 0.655891282884806 0.891269429331995 NA NA prediction 0.470756292894378 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124739493 chr11:124739492 stopgain 0.998 0 20 hm7G_associated_SNPs_23121 0 0 0 0 1 ROBO3 chr11:124739503 5'GT 124739503 Upstream 12bp 21348 chr17 8167859 8167859 1 + G T UCEC 8167860 + 8167840 8167880 41 CAGGGCTGAGCGTGCACCAGGCTCTGGAGAGGGTTCTGAGG CAGGGCTGAGCGTGCACCATGCTCTGGAGAGGGTTCTGAGG < 41bp 0.662915816289197 0.898287614968034 NA NA prediction 0.470743597357673 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167860 chr17:8167859 nonsynonymous SNV 0.188 1 20 hm7G_associated_SNPs_23123 0 0 1 0 2 PFAS chr17:8167788 3'AG 8167788 Downstream 72bp 21349 chr17 8167859 8167859 1 + G T UCEC 8167860 + 8167840 8167880 41 CAGGGCTGAGCGTGCACCAGGCTCTGGAGAGGGTTCTGAGG CAGGGCTGAGCGTGCACCATGCTCTGGAGAGGGTTCTGAGG < 41bp 0.662915816289197 0.898287614968034 NA NA prediction 0.470743597357673 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8167860 chr17:8167859 nonsynonymous SNV 0.188 1 20 hm7G_associated_SNPs_23123 0 0 1 0 2 PFAS chr17:8167919 5'GT 8167919 Upstream 61bp 21350 chr1 14075887 14075887 1 + G T LIHC 14075888 + 14075868 14075908 41 GGCGAGGAGCTCCTGGTCTGGTACAATGGGGAAGACAACCC GGCGAGGAGCTCCTGGTCTTGTACAATGGGGAAGACAACCC < 41bp 0.398785841833548 0.735357663241477 NA NA prediction 0.470715326482955 Functional Gain - PRDM2 ENSG00000116731 CDS Human protein_coding chr1:14075888 chr1:14075887 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23124 0 0 0 0 1 PRDM2 chr1:14075982 5'GT 14075982 Upstream 96bp 21351 chr5 154320679 154320679 1 + G T LUAD 154320680 + 154320660 154320700 41 GAGGGCGAAAGATGGCGGCGGCAGTACTGGGACAGTTGGGT GAGGGCGAAAGATGGCGGCTGCAGTACTGGGACAGTTGGGT < 41bp 0.640522768597197 0.875857709949818 NA NA prediction 0.470669882705242 Functional Gain - MRPL22 ENSG00000082515 CDS Human protein_coding chr5:154320680 chr5:154320679 synonymous SNV . 0 20 hm7G_associated_SNPs_23125 0 0 1 0 1 MRPL22 chr5:154320698 5'GT 154320698 Upstream 20bp 21352 chr11 47345820 47345820 1 + G T UCEC 47345821 + 47345801 47345841 41 CCCCCTGTGCCACAGTGTCGGGAGCTGTACTACTGTGTGAA CCCCCTGTGCCACAGTGTCTGGAGCTGTACTACTGTGTGAA < 41bp 0.401442572508663 0.73533203756749 NA NA prediction 0.47066407513498 Functional Gain - MADD ENSG00000110514 CDS Human protein_coding chr11:47345821 chr11:47345820 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_23126 0 0 1 0 1 MADD chr11:47345888 5'GT 47345888 Upstream 69bp 21353 chr17 4717793 4717793 1 + G T OV 4717794 + 4717774 4717814 41 GAGATTTTCATCACAGACTGGTGGTGAGTGGGAAAAGGCCC GAGATTTTCATCACAGACTTGTGGTGAGTGGGAAAAGGCCC < 41bp 0.652665263332114 0.887990065080767 NA NA prediction 0.470649603497307 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4717794 chr17:4717793 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23128 0 0 1 0 2 PLD2 chr17:4717713 3'AG 4717713 Downstream 81bp 21354 chr17 4717793 4717793 1 + G T OV 4717794 + 4717774 4717814 41 GAGATTTTCATCACAGACTGGTGGTGAGTGGGAAAAGGCCC GAGATTTTCATCACAGACTTGTGGTGAGTGGGAAAAGGCCC < 41bp 0.652665263332114 0.887990065080767 NA NA prediction 0.470649603497307 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4717794 chr17:4717793 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23128 0 0 1 0 2 PLD2 chr17:4717796 5'GT 4717796 Upstream 4bp 21355 chr10 90524299 90524299 1 + G T LUAD 90524300 + 90524280 90524320 41 GTATGGATGGGAAACAGTCGGGGAAACACTTGGTCAAGAAG GTATGGATGGGAAACAGTCTGGGAAACACTTGGTCAAGAAG < 41bp 0.637824415397341 0.873146213533445 NA NA prediction 0.470643596272207 Functional Gain - LIPN ENSG00000204020 CDS Human protein_coding chr10:90524300 chr10:90524299 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_23129 0 0 0 0 1 LIPN chr10:90524365 5'GT 90524365 Upstream 67bp 21356 chr1 112303649 112303649 1 + G T LIHC 112303650 + 112303630 112303670 41 TTGTCAATTCATACCCTTTGGCACATAAGGTTTTTGAGGAA TTGTCAATTCATACCCTTTTGCACATAAGGTTTTTGAGGAA < 41bp 0.427440556305109 0.735317856609372 NA NA prediction 0.470635713218743 Functional Gain - DDX20 ENSG00000064703 CDS Human protein_coding chr1:112303650 chr1:112303649 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23130 0 0 0 0 2 DDX20 chr1:112303609 3'AG 112303609 Downstream 41bp 21357 chr1 112303649 112303649 1 + G T LIHC 112303650 + 112303630 112303670 41 TTGTCAATTCATACCCTTTGGCACATAAGGTTTTTGAGGAA TTGTCAATTCATACCCTTTTGCACATAAGGTTTTTGAGGAA < 41bp 0.427440556305109 0.735317856609372 NA NA prediction 0.470635713218743 Functional Gain - DDX20 ENSG00000064703 CDS Human protein_coding chr1:112303650 chr1:112303649 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23130 0 0 0 0 2 DDX20 chr1:112303747 5'GT 112303747 Upstream 99bp 21358 chr22 26887438 26887438 1 + G T UCEC 26887439 + 26887419 26887459 41 TTCTGCTCAGATTTTAAAAGGACTGGAGGAGCTTGAGTTTC TTCTGCTCAGATTTTAAAATGACTGGAGGAGCTTGAGTTTC < 41bp 0.615902429056129 0.851204438434013 NA NA prediction 0.470604018755768 Functional Gain - SRRD ENSG00000100104 CDS Human protein_coding chr22:26887439 chr22:26887438 stopgain 0.917 0 20 hm7G_associated_SNPs_23132 0 0 1 0 1 SRRD chr22:26887429 3'AG 26887429 Downstream 10bp 21359 chr3 183994779 183994779 1 + G T UCEC 183994780 + 183994760 183994800 41 GCTGGCTGCACTGCTTCTGGGCTGCCTTGTGGCCCTAGGGG GCTGGCTGCACTGCTTCTGTGCTGCCTTGTGGCCCTAGGGG < 41bp 0.37925964034767 0.735299123815752 NA NA prediction 0.470598247631504 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:183994780 chr3:183994779 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_23133 0 0 0 0 1 ECE2 chr3:183994815 5'GT 183994815 Upstream 37bp 21360 chrX 17768332 17768332 1 + G T LIHC 17768333 + 17768313 17768353 41 AACGTATGGTTCTTCTTCAGGGCTCTGCCTTGGCAACCCTC AACGTATGGTTCTTCTTCATGGCTCTGCCTTGGCAACCCTC < 41bp 0.411432962712139 0.735289964928244 NA NA prediction 0.470579929856488 Functional Gain - SCML1 ENSG00000047634 CDS Human protein_coding chrX:17768333 chrX:17768332 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_23135 0 0 1 0 1 SCML1 chrX:17768413 5'GT 17768413 Upstream 82bp 21361 chr17 47589282 47589282 1 + G T UCEC 47589283 + 47589263 47589303 41 CTGCAAGCAGAACAAGCAAGGAGCCAACAGCCGGCCAGTGA CTGCAAGCAGAACAAGCAATGAGCCAACAGCCGGCCAGTGA < 41bp 0.654205774869686 0.889475872919115 NA NA prediction 0.470540196098858 Functional Gain - NGFR ENSG00000064300 CDS Human protein_coding chr17:47589283 chr17:47589282 stopgain 1.000 0 20 hm7G_associated_SNPs_23136 0 0 0 0 1 NGFR chr17:47589254 3'AG 47589254 Downstream 29bp 21362 chr19 55054617 55054617 1 + G T ACC 55054618 + 55054598 55054638 41 AAACACAGAGCCCACGGAAGGCCAACGGACGGATGAAGAGG AAACACAGAGCCCACGGAATGCCAACGGACGGATGAAGAGG < 41bp 0.64607314750108 0.881321444741469 NA NA prediction 0.470496594480777 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55054618 chr19:55054617 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_23139 0 0 0 0 2 KIR3DX1 chr19:55054585 3'AG 55054585 Downstream 33bp 21363 chr19 55054617 55054617 1 + G T ACC 55054618 + 55054598 55054638 41 AAACACAGAGCCCACGGAAGGCCAACGGACGGATGAAGAGG AAACACAGAGCCCACGGAATGCCAACGGACGGATGAAGAGG < 41bp 0.64607314750108 0.881321444741469 NA NA prediction 0.470496594480777 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55054618 chr19:55054617 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_23139 0 0 0 0 2 KIR3DX1 chr19:55054637 5'GT 55054637 Upstream 21bp 21364 chr12 97328810 97328810 1 + G T LUSC 97328811 + 97328791 97328831 41 CACTACTGGGCAGTGTTTCGGATAATGGAATAGTAACTCTC CACTACTGGGCAGTGTTTCTGATAATGGAATAGTAACTCTC < 41bp 0.640236535564998 0.875481459613913 NA NA prediction 0.470489848097829 Functional Gain - NEDD1 ENSG00000139350 CDS Human protein_coding chr12:97328811 chr12:97328810 synonymous SNV . 0 20 hm7G_associated_SNPs_23141 0 0 1 0 1 NEDD1 chr12:97328754 3'AG 97328754 Downstream 57bp 21365 chr18 63491977 63491977 1 + G T LUAD 63491978 + 63491958 63491998 41 TTGGAGCTAATGCTGAAATGGAGTACAAGATTGTGGATGGT TTGGAGCTAATGCTGAAATTGAGTACAAGATTGTGGATGGT < 41bp 0.646246929478796 0.881483272520696 NA NA prediction 0.470472686083801 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63491978 chr18:63491977 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23142 0 0 0 0 1 CDH7 chr18:63492067 5'GT 63492067 Upstream 91bp 21366 chr2 120003548 120003548 1 + G T UCEC 120003549 + 120003529 120003569 41 ACCCTGCAGGCTGGCCCAAGGGATGGTAACAGGCAGGTAGG ACCCTGCAGGCTGGCCCAATGGATGGTAACAGGCAGGTAGG < 41bp 0.652917374281636 0.88811804249504 NA NA prediction 0.470401336426808 Functional Gain - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120003549 chr2:120003548 nonsynonymous SNV 0.972 1 20 hm7G_associated_SNPs_23145 0 0 1 0 1 STEAP3 chr2:120003564 5'GT 120003564 Upstream 17bp 21367 chr7 31144518 31144518 1 + G T OV 31144519 + 31144499 31144539 41 TCTCTACTGTTTTCTGAATGGTGAGGTAAGACCTTGGCCCT TCTCTACTGTTTTCTGAATTGTGAGGTAAGACCTTGGCCCT < 41bp 0.408714628691419 0.735200452614248 NA NA prediction 0.470400905228496 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31144519 chr7:31144518 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23146 0 0 0 0 2 ADCYAP1R1 chr7:31144482 3'AG 31144482 Downstream 37bp 21368 chr7 31144518 31144518 1 + G T OV 31144519 + 31144499 31144539 41 TCTCTACTGTTTTCTGAATGGTGAGGTAAGACCTTGGCCCT TCTCTACTGTTTTCTGAATTGTGAGGTAAGACCTTGGCCCT < 41bp 0.408714628691419 0.735200452614248 NA NA prediction 0.470400905228496 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31144519 chr7:31144518 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23146 0 0 0 0 2 ADCYAP1R1 chr7:31144523 5'GT 31144523 Upstream 6bp 21369 chr18 32335956 32335956 1 + G T SKCM 32335957 + 32335937 32335977 41 TAGAATGATTGAAGATAGTGGGAAAAGAGGAAATACCATGG TAGAATGATTGAAGATAGTTGGAAAAGAGGAAATACCATGG < 41bp 0.460886140240316 0.735180279420682 NA NA prediction 0.470360558841364 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32335957 chr18:32335956 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23150 0 0 0 1 1 DTNA chr18:32336007 5'GT 32336007 Upstream 52bp 21370 chr12 124239023 124239023 1 + G T SARC 124239024 + 124239004 124239044 41 ATTCCATCGAGTACTGTCTGGGATGCATCTCCAACACCGCC ATTCCATCGAGTACTGTCTTGGATGCATCTCCAACACCGCC < 41bp 0.392007232069433 0.735174443159163 NA NA prediction 0.470348886318326 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239024 chr12:124239023 synonymous SNV . 0 20 hm7G_associated_SNPs_23151 0 0 1 0 2 ATP6V0A2 chr12:124238967 3'AG 124238967 Downstream 57bp 21371 chr12 124239023 124239023 1 + G T SARC 124239024 + 124239004 124239044 41 ATTCCATCGAGTACTGTCTGGGATGCATCTCCAACACCGCC ATTCCATCGAGTACTGTCTTGGATGCATCTCCAACACCGCC < 41bp 0.392007232069433 0.735174443159163 NA NA prediction 0.470348886318326 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124239024 chr12:124239023 synonymous SNV . 0 20 hm7G_associated_SNPs_23151 0 0 1 0 2 ATP6V0A2 chr12:124239084 5'GT 124239084 Upstream 62bp 21372 chr8 29963269 29963269 1 + G T TGCT 29963270 + 29963250 29963290 41 TTATTTCCATAGATTGAGTGGGGAGCTTGTGCACTTGTTCT TTATTTCCATAGATTGAGTTGGGAGCTTGTGCACTTGTTCT < 41bp 0.626655812792797 0.861827104370083 NA NA prediction 0.470342583154572 Functional Gain - LEPROTL1 ENSG00000104660 CDS Human protein_coding chr8:29963270 chr8:29963269 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23153 0 0 1 0 1 LEPROTL1 chr8:29963262 3'AG 29963262 Downstream 8bp 21373 chr4 178897011 178897011 1 + G T LUSC 178897012 + 178896992 178897032 41 TTGTCATCACTGGGGCACGGGAAAGGGGTTGAGCAAGTCAA TTGTCATCACTGGGGCACGTGAAAGGGGTTGAGCAAGTCAA < 41bp 0.418911256065639 0.735158816360648 NA NA prediction 0.470317632721295 Functional Gain - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178897012 chr4:178897011 stopgain . 0 20 hm7G_associated_SNPs_23154 0 0 0 0 2 LINC01098 chr4:178896958 3'AG 178896958 Downstream 54bp 21374 chr4 178897011 178897011 1 + G T LUSC 178897012 + 178896992 178897032 41 TTGTCATCACTGGGGCACGGGAAAGGGGTTGAGCAAGTCAA TTGTCATCACTGGGGCACGTGAAAGGGGTTGAGCAAGTCAA < 41bp 0.418911256065639 0.735158816360648 NA NA prediction 0.470317632721295 Functional Gain - LINC01098 ENSG00000231171 CDS Human lincRNA chr4:178897012 chr4:178897011 stopgain . 0 20 hm7G_associated_SNPs_23154 0 0 0 0 2 LINC01098 chr4:178897097 5'GT 178897097 Upstream 87bp 21375 chr12 57863310 57863310 1 + G T LUAD 57863311 + 57863291 57863331 41 CAGTGGTGTGGAAATGACTGGCAATGCAGGGGGCAGCACTG CAGTGGTGTGGAAATGACTTGCAATGCAGGGGGCAGCACTG < 41bp 0.664659421531661 0.899805863188618 NA NA prediction 0.470292883313916 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57863311 chr12:57863310 nonsynonymous SNV 0.544 3 20 hm7G_associated_SNPs_23156 0 0 0 0 1 GLI1 chr12:57863214 3'AG 57863214 Downstream 97bp 21376 chr9 72895751 72895751 1 + G T STAD 72895752 + 72895732 72895772 41 TATAAACAAGATGTGGAGAGGTTCTATGAACGGAAGCGACA TATAAACAAGATGTGGAGATGTTCTATGAACGGAAGCGACA < 41bp 0.633598278809686 0.868734735394274 NA NA prediction 0.470272913169175 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72895752 chr9:72895751 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_23157 0 0 1 0 2 SMC5 chr9:72895675 3'AG 72895675 Downstream 77bp 21377 chr9 72895751 72895751 1 + G T STAD 72895752 + 72895732 72895772 41 TATAAACAAGATGTGGAGAGGTTCTATGAACGGAAGCGACA TATAAACAAGATGTGGAGATGTTCTATGAACGGAAGCGACA < 41bp 0.633598278809686 0.868734735394274 NA NA prediction 0.470272913169175 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72895752 chr9:72895751 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_23157 0 0 1 0 2 SMC5 chr9:72895815 5'GT 72895815 Upstream 65bp 21378 chr15 40498433 40498433 1 + G T UCEC 40498434 + 40498414 40498454 41 CGAGGATGCCATTATCACAGGCTTCAGAAATGTAACAATTT CGAGGATGCCATTATCACATGCTTCAGAAATGTAACAATTT < 41bp 0.645658429772089 0.880786649617027 NA NA prediction 0.470256439689875 Functional Gain - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40498434 chr15:40498433 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23158 0 0 1 0 1 BUB1B chr15:40498385 3'AG 40498385 Downstream 49bp 21379 chr12 3040324 3040324 1 + G T OV 3040325 + 3040305 3040345 41 GGTGTCACAGTAAGATGTCGGATAATCCGGGATAAAAGGGG GGTGTCACAGTAAGATGTCTGATAATCCGGGATAAAAGGGG < 41bp 0.656882515628019 0.892000674171621 NA NA prediction 0.470236317087205 Functional Gain - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3040325 chr12:3040324 nonsynonymous SNV 0.517 5 20 hm7G_associated_SNPs_23159 0 0 0 0 1 TULP3 chr12:3040406 5'GT 3040406 Upstream 83bp 21380 chr16 53524099 53524099 1 + G T UCEC 53524100 + 53524080 53524120 41 AACTCCTACTAAAAAGAGAGGAATTCTTTTGGAAGATGGAA AACTCCTACTAAAAAGAGATGAATTCTTTTGGAAGATGGAA < 41bp 0.626344682570868 0.861462504641644 NA NA prediction 0.470235644141551 Functional Gain - RBL2 ENSG00000103479 CDS Human protein_coding chr16:53524100 chr16:53524099 stopgain 1.000 1 20 hm7G_associated_SNPs_23160 0 0 1 0 1 RBL2 chr16:53524042 3'AG 53524042 Downstream 58bp 21381 chr14 23313602 23313602 1 + G T UCEC 23313603 + 23313583 23313623 41 CGCTGGTTCTGGCGGGTGAGGAATAACCAAGTGATGGATGG CGCTGGTTCTGGCGGGTGATGAATAACCAAGTGATGGATGG < 41bp 0.651705328661755 0.88681812297251 NA NA prediction 0.470225588621509 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23313603 chr14:23313602 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23162 0 0 0 0 1 MMP14 chr14:23313580 3'AG 23313580 Downstream 23bp 21382 chr4 48996686 48996686 1 + G T SKCM 48996687 + 48996667 48996707 41 GACTGGTGAGGTAGCCACGGGGATGGCCTCTAGACCCAACT GACTGGTGAGGTAGCCACGTGGATGGCCTCTAGACCCAACT < 41bp 0.390778142882468 0.735111390096 NA NA prediction 0.470222780191999 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48996687 chr4:48996686 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_23163 0 0 0 0 1 CWH43 chr4:48996636 3'AG 48996636 Downstream 51bp 21383 chr5 179032892 179032892 1 + G T COAD 179032893 + 179032873 179032913 41 TTAGGTCCAAGCTGAAGATGGAAGATATAAAAGAAGTGAAC TTAGGTCCAAGCTGAAGATTGAAGATATAAAAGAAGTGAAC < 41bp 0.646590566449537 0.881678728264022 NA NA prediction 0.47017632362897 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179032893 chr5:179032892 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23165 0 0 1 0 2 RUFY1 chr5:179032877 3'AG 179032877 Downstream 16bp 21384 chr5 179032892 179032892 1 + G T COAD 179032893 + 179032873 179032913 41 TTAGGTCCAAGCTGAAGATGGAAGATATAAAAGAAGTGAAC TTAGGTCCAAGCTGAAGATTGAAGATATAAAAGAAGTGAAC < 41bp 0.646590566449537 0.881678728264022 NA NA prediction 0.47017632362897 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179032893 chr5:179032892 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23165 0 0 1 0 2 RUFY1 chr5:179032925 5'GT 179032925 Upstream 34bp 21385 chr11 829388 829388 1 + G T UCEC 829389 + 829369 829409 41 TGGGGGTGGCGTCAGCCCAGGGAGCGAACCCCTGCAGGACT TGGGGGTGGCGTCAGCCCATGGAGCGAACCCCTGCAGGACT < 41bp 0.39164884806026 0.735081083159635 NA NA prediction 0.470162166319271 Functional Gain - CRACR2B ENSG00000177685 CDS Human protein_coding chr11:829389 chr11:829388 nonsynonymous SNV 0.553 1 20 hm7G_associated_SNPs_23166 0 0 1 0 1 CRACR2B chr11:829360 3'AG 829360 Downstream 29bp 21386 chr1 13940895 13940895 1 + G T LUSC 13940896 + 13940876 13940916 41 TGGTTATGCGAAAAATGTCGGGAAGGTACTCGTAAGTAAAT TGGTTATGCGAAAAATGTCTGGAAGGTACTCGTAAGTAAAT < 41bp 0.640143898950781 0.875215028765234 NA NA prediction 0.470142259628906 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13940896 chr1:13940895 synonymous SNV . 0 20 hm7G_associated_SNPs_23168 0 0 0 0 2 PDPN chr1:13940900 5'GT 13940900 Upstream 6bp 21387 chr1 13940895 13940895 1 + G T LUSC 13940896 + 13940876 13940916 41 TGGTTATGCGAAAAATGTCGGGAAGGTACTCGTAAGTAAAT TGGTTATGCGAAAAATGTCTGGAAGGTACTCGTAAGTAAAT < 41bp 0.640143898950781 0.875215028765234 NA NA prediction 0.470142259628906 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13940896 chr1:13940895 synonymous SNV . 0 20 hm7G_associated_SNPs_23168 0 0 0 0 2 PDPN chr1:13940906 5'GT 13940906 Upstream 12bp 21388 chr17 5238519 5238519 1 + G T UCEC 5238520 + 5238500 5238540 41 ACCAGTTCCACCTTAGGCTGGAGCAGGAGCGAACACAGTGG ACCAGTTCCACCTTAGGCTTGAGCAGGAGCGAACACAGTGG < 41bp 0.653720027409831 0.888784530173156 NA NA prediction 0.470129005526648 Functional Gain - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5238520 chr17:5238519 synonymous SNV . 0 20 hm7G_associated_SNPs_23169 0 0 1 0 1 RABEP1 chr17:5238479 3'AG 5238479 Downstream 41bp 21389 chr11 65055292 65055292 1 + G T LUAD 65055293 + 65055273 65055313 41 GCTGTCATCAACCATGACCGGCCAGATGTCTGCATCCTGGT GCTGTCATCAACCATGACCTGCCAGATGTCTGCATCCTGGT < 41bp 0.659482510558542 0.894520066536265 NA NA prediction 0.470075111955446 Functional Gain - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65055293 chr11:65055292 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_23170 0 0 1 0 1 POLA2 chr11:65055311 5'GT 65055311 Upstream 20bp 21390 chr18 72238438 72238438 1 + G T HNSC 72238439 + 72238419 72238459 41 AGGTGAAATGCAGAGACCAGGATTTTCACTCAGGAACCTTT AGGTGAAATGCAGAGACCATGATTTTCACTCAGGAACCTTT < 41bp 0.398659095995701 0.73501733171765 NA NA prediction 0.470034663435301 Functional Gain - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72238439 chr18:72238438 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_23171 0 0 0 0 2 CNDP1 chr18:72238421 3'AG 72238421 Downstream 18bp 21391 chr18 72238438 72238438 1 + G T HNSC 72238439 + 72238419 72238459 41 AGGTGAAATGCAGAGACCAGGATTTTCACTCAGGAACCTTT AGGTGAAATGCAGAGACCATGATTTTCACTCAGGAACCTTT < 41bp 0.398659095995701 0.73501733171765 NA NA prediction 0.470034663435301 Functional Gain - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72238439 chr18:72238438 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_23171 0 0 0 0 2 CNDP1 chr18:72238505 5'GT 72238505 Upstream 68bp 21392 chr17 44952699 44952699 1 + G T UCEC 44952700 + 44952680 44952720 41 ACAAGGACCTGCGGGCACGGGCAGACGCCCACAATACCCAC ACAAGGACCTGCGGGCACGTGCAGACGCCCACAATACCCAC < 41bp 0.661209322559058 0.896211120701881 NA NA prediction 0.470003596285646 Functional Gain - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44952700 chr17:44952699 synonymous SNV . 0 20 hm7G_associated_SNPs_23173 0 0 0 0 1 WNT9B chr17:44952732 5'GT 44952732 Upstream 34bp 21393 chr17 7399865 7399865 1 + G T LGG 7399866 + 7399846 7399886 41 AAAAACATATGCGAGGGTGGGGAGGAGATGGACAACAAGTT AAAAACATATGCGAGGGTGTGGAGGAGATGGACAACAAGTT < 41bp 0.649656219032284 0.884625003319974 NA NA prediction 0.469937568575381 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7399866 chr17:7399865 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_23177 0 0 1 0 1 POLR2A chr17:7399932 5'GT 7399932 Upstream 68bp 21394 chr7 36324354 36324354 1 + G T THCA 36324355 + 36324335 36324375 41 GCATGGAGCTGAGAGACGCGGGTTCACAGGAGAGCTCGCCA GCATGGAGCTGAGAGACGCTGGTTCACAGGAGAGCTCGCCA < 41bp 0.662155585790065 0.897107360861118 NA NA prediction 0.469903550142106 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324355 chr7:36324354 synonymous SNV . 0 20 hm7G_associated_SNPs_23178 0 0 1 0 2 EEPD1 chr7:36324295 3'AG 36324295 Downstream 60bp 21395 chr7 36324354 36324354 1 + G T THCA 36324355 + 36324335 36324375 41 GCATGGAGCTGAGAGACGCGGGTTCACAGGAGAGCTCGCCA GCATGGAGCTGAGAGACGCTGGTTCACAGGAGAGCTCGCCA < 41bp 0.662155585790065 0.897107360861118 NA NA prediction 0.469903550142106 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36324355 chr7:36324354 synonymous SNV . 0 20 hm7G_associated_SNPs_23178 0 0 1 0 2 EEPD1 chr7:36324429 5'GT 36324429 Upstream 76bp 21396 chrX 10109504 10109504 1 + G T UCEC 10109505 + 10109485 10109525 41 GCATTCTTCACAAGGCCAAGGATCAACATACCTCCTCTCCC GCATTCTTCACAAGGCCAATGATCAACATACCTCCTCTCCC < 41bp 0.412474878195767 0.734944724169661 NA NA prediction 0.469889448339322 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10109505 chrX:10109504 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_23179 0 0 0 0 1 WWC3 chrX:10109475 3'AG 10109475 Downstream 30bp 21397 chr9 137772670 137772670 1 + G T HNSC 137772671 + 137772651 137772691 41 AGCAAAGACCAGAAGAGATGGAGCTGGACAGAGCTGTGGGG AGCAAAGACCAGAAGAGATTGAGCTGGACAGAGCTGTGGGG < 41bp 0.417651756231077 0.734934508031333 NA NA prediction 0.469869016062667 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137772671 chr9:137772670 nonsynonymous SNV 0.206 0 20 hm7G_associated_SNPs_23180 0 0 0 0 1 FCN2 chr9:137772767 5'GT 137772767 Upstream 98bp 21398 chr17 14110215 14110215 1 + G T UCEC 14110216 + 14110196 14110236 41 TCCGTGAAGACTACTCCCGGGGCGGCTACTGCATGATGTCG TCCGTGAAGACTACTCCCGTGGCGGCTACTGCATGATGTCG < 41bp 0.39578448901534 0.734933686364629 NA NA prediction 0.469867372729258 Functional Gain - COX10 ENSG00000006695 CDS Human protein_coding chr17:14110216 chr17:14110215 synonymous SNV . 0 20 hm7G_associated_SNPs_23181 0 0 1 0 1 COX10 chr17:14110127 3'AG 14110127 Downstream 89bp 21399 chr11 20409581 20409581 1 + G T LIHC 20409582 + 20409562 20409602 41 TAGGCGGCCGGGGCGCTGTGGAGAATGAGGAGGACCTGCCA TAGGCGGCCGGGGCGCTGTTGAGAATGAGGAGGACCTGCCA < 41bp 0.651668449118712 0.886591046233536 NA NA prediction 0.469845194229648 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20409582 chr11:20409581 synonymous SNV . 0 20 hm7G_associated_SNPs_23186 0 0 1 0 1 PRMT3 chr11:20409565 3'AG 20409565 Downstream 17bp 21400 chr3 184102931 184102931 1 + G T COAD 184102932 + 184102912 184102952 41 AGTGCTGCTGGCTGGGCTTGGTGGCTCAGAACAAGGCACTG AGTGCTGCTGGCTGGGCTTTGTGGCTCAGAACAAGGCACTG < 41bp 0.393300490153225 0.734914416308708 NA NA prediction 0.469828832617416 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184102932 chr3:184102931 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23188 0 0 1 0 1 CHRD chr3:184103026 5'GT 184103026 Upstream 96bp 21401 chr19 21116874 21116874 1 + G T HNSC 21116875 + 21116855 21116895 41 CCATAGAATTCTCTCTGAAGGAGTGGCAATGCCTGGACACT CCATAGAATTCTCTCTGAATGAGTGGCAATGCCTGGACACT < 41bp 0.428651786033823 0.734901829353322 NA NA prediction 0.469803658706644 Functional Gain - ZNF85 ENSG00000105750 CDS Human protein_coding chr19:21116875 chr19:21116874 nonsynonymous SNV 0.024 1 20 hm7G_associated_SNPs_23190 0 0 1 1 1 ZNF85 chr19:21116956 5'GT 21116956 Upstream 83bp 21402 chr17 16335378 16335378 1 + G T UCEC 16335379 + 16335359 16335399 41 GGAGGGACAGGAGGACGAGGGCAACGGGGCCCAGTACAGGG GGAGGGACAGGAGGACGAGTGCAACGGGGCCCAGTACAGGG < 41bp 0.65750225921525 0.892402589929895 NA NA prediction 0.46980066142929 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16335379 chr17:16335378 nonsynonymous SNV 0.026 1 20 hm7G_associated_SNPs_23191 0 0 1 0 1 TRPV2 chr17:16335280 3'AG 16335280 Downstream 99bp 21403 chr15 85433744 85433744 1 + G T SKCM 85433745 + 85433725 85433765 41 GCAGCTGTTTCGATGGATCGGCACAGGCCTGCTCTGCACTG GCAGCTGTTTCGATGGATCTGCACAGGCCTGCTCTGCACTG < 41bp 0.394424894786402 0.734893733180245 NA NA prediction 0.469787466360489 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85433745 chr15:85433744 nonsynonymous SNV 0.091 0 20 hm7G_associated_SNPs_23192 0 0 1 0 2 SLC28A1 chr15:85433674 3'AG 85433674 Downstream 71bp 21404 chr15 85433744 85433744 1 + G T SKCM 85433745 + 85433725 85433765 41 GCAGCTGTTTCGATGGATCGGCACAGGCCTGCTCTGCACTG GCAGCTGTTTCGATGGATCTGCACAGGCCTGCTCTGCACTG < 41bp 0.394424894786402 0.734893733180245 NA NA prediction 0.469787466360489 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85433745 chr15:85433744 nonsynonymous SNV 0.091 0 20 hm7G_associated_SNPs_23192 0 0 1 0 2 SLC28A1 chr15:85433765 5'GT 85433765 Upstream 22bp 21405 chr3 196630449 196630449 1 + G T COAD 196630450 + 196630430 196630470 41 TAGACAGCTGGTAACCAAAGGATATAATGGAGTAAAAAGAT TAGACAGCTGGTAACCAAATGATATAATGGAGTAAAAAGAT < 41bp 0.634192740703352 0.869031188679075 NA NA prediction 0.469676895951446 Functional Gain - SENP5 ENSG00000119231 CDS Human protein_coding chr3:196630450 chr3:196630449 stopgain 1.000 1 20 hm7G_associated_SNPs_23198 0 0 1 0 2 SENP5 chr3:196630404 3'AG 196630404 Downstream 46bp 21406 chr3 196630449 196630449 1 + G T COAD 196630450 + 196630430 196630470 41 TAGACAGCTGGTAACCAAAGGATATAATGGAGTAAAAAGAT TAGACAGCTGGTAACCAAATGATATAATGGAGTAAAAAGAT < 41bp 0.634192740703352 0.869031188679075 NA NA prediction 0.469676895951446 Functional Gain - SENP5 ENSG00000119231 CDS Human protein_coding chr3:196630450 chr3:196630449 stopgain 1.000 1 20 hm7G_associated_SNPs_23198 0 0 1 0 2 SENP5 chr3:196630481 5'GT 196630481 Upstream 33bp 21407 chr5 137721771 137721771 1 + G T LUAD 137721772 + 137721752 137721792 41 GAAGAGAGAAAGCATAGAGGGGAAAGATGGCCGGAGGAGGA GAAGAGAGAAAGCATAGAGTGGAAAGATGGCCGGAGGAGGA < 41bp 0.652655698745202 0.887487477688954 NA NA prediction 0.469663557887504 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137721772 chr5:137721771 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23199 0 0 1 0 1 KDM3B chr5:137721711 3'AG 137721711 Downstream 61bp 21408 chr16 75256940 75256940 1 + G T rs570099637 75256941 + 75256921 75256961 41 GTCACCGCTGCCCACTGCGGGGTCAGGTGAGGACCGGGCAG GTCACCGCTGCCCACTGCGTGGTCAGGTGAGGACCGGGCAG < 41bp 0.649466704083043 0.88427693776058 NA NA prediction 0.469620467355073 Functional Gain - CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256941 chr16:75256940 nonsynonymous SNV 0.922 2 20 hm7G_associated_SNPs_23201 0 0 0 0 2 CTRB1 chr16:75256867 3'AG 75256867 Downstream 74bp 21409 chr16 75256940 75256940 1 + G T rs570099637 75256941 + 75256921 75256961 41 GTCACCGCTGCCCACTGCGGGGTCAGGTGAGGACCGGGCAG GTCACCGCTGCCCACTGCGTGGTCAGGTGAGGACCGGGCAG < 41bp 0.649466704083043 0.88427693776058 NA NA prediction 0.469620467355073 Functional Gain - CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75256941 chr16:75256940 nonsynonymous SNV 0.922 2 20 hm7G_associated_SNPs_23201 0 0 0 0 2 CTRB1 chr16:75256946 5'GT 75256946 Upstream 7bp 21410 chr4 119154278 119154278 1 + G T STAD 119154279 + 119154259 119154299 41 AATAGAAATAACTACCACAGGGGGATTGATTGGTAAGATGG AATAGAAATAACTACCACATGGGGATTGATTGGTAAGATGG < 41bp 0.426561446023098 0.734808073582428 NA NA prediction 0.469616147164856 Functional Gain - NDST3 ENSG00000164100 CDS Human protein_coding chr4:119154279 chr4:119154278 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23202 0 0 0 0 1 NDST3 chr4:119154290 5'GT 119154290 Upstream 13bp 21411 chr20 333868 333868 1 + G T THCA 333869 + 333849 333889 41 CCTAGATCAGCCTGTCCTCGGGGACCCTGCTTCTGCTGCTG CCTAGATCAGCCTGTCCTCTGGGACCCTGCTTCTGCTGCTG < 41bp 0.387771952479118 0.734780277656731 NA NA prediction 0.469560555313463 Functional Gain - NRSN2 ENSG00000125841 CDS Human protein_coding chr20:333869 chr20:333868 synonymous SNV . 0 20 hm7G_associated_SNPs_23204 0 0 1 0 1 NRSN2 chr20:333854 3'AG 333854 Downstream 15bp 21412 chr6 127911457 127911457 1 + G T LUAD 127911458 + 127911438 127911478 41 TAAATATGCTTGACAATGTGGATAAATCTATAGGTAAGAAC TAAATATGCTTGACAATGTTGATAAATCTATAGGTAAGAAC < 41bp 0.438248445373674 0.734777685573305 NA NA prediction 0.46955537114661 Functional Gain - C6orf58 ENSG00000184530 CDS Human protein_coding chr6:127911458 chr6:127911457 synonymous SNV . 0 20 hm7G_associated_SNPs_23205 0 0 0 0 1 C6orf58 chr6:127911470 5'GT 127911470 Upstream 14bp 21413 chr1 203098074 203098074 1 + G T STAD 203098075 + 203098055 203098095 41 TGGTGATCTGGGCGGTGAAGGTGAACCAGGCGCTGCGGGAT TGGTGATCTGGGCGGTGAATGTGAACCAGGCGCTGCGGGAT < 41bp 0.653866908305502 0.888636012816121 NA NA prediction 0.469538209021239 Functional Gain - ADORA1 ENSG00000163485 CDS Human protein_coding chr1:203098075 chr1:203098074 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23206 0 0 0 0 1 ADORA1 chr1:203097989 3'AG 203097989 Downstream 86bp 21414 chr19 4651884 4651884 1 + G T UCEC 4651885 + 4651865 4651905 41 TGTGTCCCCCGCAGGCCATGGACACCTTCAGCACCAAGAGC TGTGTCCCCCGCAGGCCATTGACACCTTCAGCACCAAGAGC < 41bp 0.397275418809039 0.734750438813236 NA NA prediction 0.469500877626472 Functional Gain - TNFAIP8L1 ENSG00000185361 CDS Human protein_coding chr19:4651885 chr19:4651884 nonsynonymous SNV 0.908 1 20 hm7G_associated_SNPs_23207 0 0 0 0 1 TNFAIP8L1 chr19:4651879 3'AG 4651879 Downstream 6bp 21415 chr1 15768970 15768970 1 + G T LUAD 15768971 + 15768951 15768991 41 GGACCTACCGTGTGGCCGTGGGAAAGAACAACCTGGAGGTG GGACCTACCGTGTGGCCGTTGGAAAGAACAACCTGGAGGTG < 41bp 0.657926031015923 0.892674795521204 NA NA prediction 0.469497529010561 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15768971 chr1:15768970 nonsynonymous SNV 0.775 0 20 hm7G_associated_SNPs_23209 0 0 0 0 2 CTRC chr1:15768943 3'AG 15768943 Downstream 28bp 21416 chr1 15768970 15768970 1 + G T LUAD 15768971 + 15768951 15768991 41 GGACCTACCGTGTGGCCGTGGGAAAGAACAACCTGGAGGTG GGACCTACCGTGTGGCCGTTGGAAAGAACAACCTGGAGGTG < 41bp 0.657926031015923 0.892674795521204 NA NA prediction 0.469497529010561 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15768971 chr1:15768970 nonsynonymous SNV 0.775 0 20 hm7G_associated_SNPs_23209 0 0 0 0 2 CTRC chr1:15769068 5'GT 15769068 Upstream 99bp 21417 chr13 41932534 41932534 1 + G T ESCA 41932535 + 41932515 41932555 41 GACAGTATTCTTTGGCTTTGGATTATATTAATGCTGCAATT GACAGTATTCTTTGGCTTTTGATTATATTAATGCTGCAATT < 41bp 0.413114971982385 0.734730449969864 NA NA prediction 0.469460899939729 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932535 chr13:41932534 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23211 0 0 1 13 2 NAA16 chr13:41932440 3'AG 41932440 Downstream 95bp 21418 chr13 41932534 41932534 1 + G T ESCA 41932535 + 41932515 41932555 41 GACAGTATTCTTTGGCTTTGGATTATATTAATGCTGCAATT GACAGTATTCTTTGGCTTTTGATTATATTAATGCTGCAATT < 41bp 0.413114971982385 0.734730449969864 NA NA prediction 0.469460899939729 Functional Gain - NAA16 ENSG00000172766 CDS Human protein_coding chr13:41932535 chr13:41932534 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23211 0 0 1 13 2 NAA16 chr13:41932609 5'GT 41932609 Upstream 76bp 21419 chr12 3126691 3126691 1 + G T LUAD 3126692 + 3126672 3126712 41 GGCCGCCCAGCAGTCTCAGGGGTAAGTGGGCTGCCGAGAGC GGCCGCCCAGCAGTCTCAGTGGTAAGTGGGCTGCCGAGAGC < 41bp 0.394473667473954 0.734717069587688 NA NA prediction 0.469434139175376 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3126692 chr12:3126691 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_23212 0 0 1 0 1 TEAD4 chr12:3126692 5'GT 3126692 Upstream 2bp 21420 chr16 18602474 18602474 1 + G T UCEC 18602475 + 18602455 18602495 41 AAGGCGGCAGTGGCATGGAGGCTCCAGAGACTGAGCCCTTC AAGGCGGCAGTGGCATGGATGCTCCAGAGACTGAGCCCTTC < 41bp 0.625714851427401 0.860423293132497 NA NA prediction 0.469416883410192 Functional Gain - ABCC6P1 ENSG00000256340 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr16:18602475 chr16:18602474 . . 0 20 hm7G_associated_SNPs_23214 0 0 0 0 1 ABCC6P1 chr16:18602426 3'AG 18602426 Downstream 49bp 21421 chr17 80684370 80684370 1 + G T HNSC 80684371 + 80684351 80684391 41 TGCAGGTGAATGACTGGCAGGAGGACTGGGTCGTGTTCTAT TGCAGGTGAATGACTGGCATGAGGACTGGGTCGTGTTCTAT < 41bp 0.655682999403291 0.890384667841684 NA NA prediction 0.469403336876788 Functional Gain - FN3KRP ENSG00000141560 CDS Human protein_coding chr17:80684371 chr17:80684370 nonsynonymous SNV 0.815 1 20 hm7G_associated_SNPs_23215 0 0 1 0 1 FN3KRP chr17:80684356 3'AG 80684356 Downstream 15bp 21422 chrX 70352315 70352315 1 + G T LUAD 70352316 + 70352296 70352336 41 ACATGTGTTAAAGGCTGCTGGGGAAGAATTGGAGAAGGGTC ACATGTGTTAAAGGCTGCTTGGGAAGAATTGGAGAAGGGTC < 41bp 0.658047165824015 0.892686646091648 NA NA prediction 0.469278960535267 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70352316 chrX:70352315 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23218 0 0 1 0 2 MED12 chrX:70352227 3'AG 70352227 Downstream 89bp 21423 chrX 70352315 70352315 1 + G T LUAD 70352316 + 70352296 70352336 41 ACATGTGTTAAAGGCTGCTGGGGAAGAATTGGAGAAGGGTC ACATGTGTTAAAGGCTGCTTGGGAAGAATTGGAGAAGGGTC < 41bp 0.658047165824015 0.892686646091648 NA NA prediction 0.469278960535267 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70352316 chrX:70352315 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23218 0 0 1 0 2 MED12 chrX:70352388 5'GT 70352388 Upstream 74bp 21424 chr17 57322876 57322876 1 + G T LIHC 57322877 + 57322857 57322897 41 AATCTAAAGAGAGCAACTGGGGTCAATGTAAACATCTCTGA AATCTAAAGAGAGCAACTGTGGTCAATGTAAACATCTCTGA < 41bp 0.6466666375053 0.881287762847272 NA NA prediction 0.469242250683944 Functional Gain - GDPD1 ENSG00000153982 CDS Human protein_coding chr17:57322877 chr17:57322876 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_23220 0 0 1 0 1 GDPD1 chr17:57322910 5'GT 57322910 Upstream 35bp 21425 chr12 121175679 121175679 1 + G A SKCM 121175680 + 121175660 121175700 41 GCTGCGTCCACCACCGCCCGGGCCGAGGGCGACTCATGGGT GCTGCGTCCACCACCGCCCAGGCCGAGGGCGACTCATGGGT < 41bp 0.503263758779653 0.737874040590464 NA NA prediction 0.469220563621621 Functional Gain - ACADS ENSG00000122971 CDS Human protein_coding chr12:121175680 chr12:121175679 nonsynonymous SNV 0.173 1 20 hm7G_associated_SNPs_23221 0 0 1 0 1 ACADS chr12:121175640 3'AG 121175640 Downstream 40bp 21426 chr15 45713252 45713252 1 + G T OV 45713253 + 45713233 45713273 41 CTTAATAGGCTGCTTTGCTGGCTCTGCAAGAAAATGGACTA CTTAATAGGCTGCTTTGCTTGCTCTGCAAGAAAATGGACTA < 41bp 0.642884804385456 0.877486314647568 NA NA prediction 0.469203020524223 Functional Gain - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45713253 chr15:45713252 synonymous SNV . 0 20 hm7G_associated_SNPs_23223 0 0 1 2 1 SPATA5L1 chr15:45713241 3'AG 45713241 Downstream 12bp 21427 chr20 61957465 61957465 1 + G T LUAD 61957466 + 61957446 61957486 41 AGGGAATGAGAGGCCTGGAGGGAACTGCTGGCCTGCCTGGA AGGGAATGAGAGGCCTGGATGGAACTGCTGGCCTGCCTGGA < 41bp 0.654809780286067 0.889405301459892 NA NA prediction 0.46919104234765 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61957466 chr20:61957465 nonsynonymous SNV 0.864 3 20 hm7G_associated_SNPs_23224 0 0 0 0 1 COL20A1 chr20:61957448 3'AG 61957448 Downstream 18bp 21428 chr17 2224875 2224875 1 + G T COAD 2224876 + 2224856 2224896 41 GGTGGTACCTGTAGGTGGAGGAGGAATGCTTGCTGGAATAG GGTGGTACCTGTAGGTGGATGAGGAATGCTTGCTGGAATAG < 41bp 0.648207623944838 0.88278830792749 NA NA prediction 0.469161367965303 Functional Gain - SRR ENSG00000167720 CDS Human protein_coding chr17:2224876 chr17:2224875 stopgain 1.000 1 20 hm7G_associated_SNPs_23225 0 0 0 0 2 SRR chr17:2224836 3'AG 2224836 Downstream 40bp 21429 chr17 2224875 2224875 1 + G T COAD 2224876 + 2224856 2224896 41 GGTGGTACCTGTAGGTGGAGGAGGAATGCTTGCTGGAATAG GGTGGTACCTGTAGGTGGATGAGGAATGCTTGCTGGAATAG < 41bp 0.648207623944838 0.88278830792749 NA NA prediction 0.469161367965303 Functional Gain - SRR ENSG00000167720 CDS Human protein_coding chr17:2224876 chr17:2224875 stopgain 1.000 1 20 hm7G_associated_SNPs_23225 0 0 0 0 2 SRR chr17:2224910 5'GT 2224910 Upstream 36bp 21430 chr7 112096080 112096080 1 + G T UCEC 112096081 + 112096061 112096101 41 AGAAGTCCTTGATGAGGAAGGAACTCAAGAAGACCTAGAGT AGAAGTCCTTGATGAGGAATGAACTCAAGAAGACCTAGAGT < 41bp 0.645441214605817 0.880020896404777 NA NA prediction 0.46915936359792 Functional Gain - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112096081 chr7:112096080 stopgain 1.000 1 20 hm7G_associated_SNPs_23226 0 0 1 0 2 IFRD1 chr7:112096057 3'AG 112096057 Downstream 24bp 21431 chr7 112096080 112096080 1 + G T UCEC 112096081 + 112096061 112096101 41 AGAAGTCCTTGATGAGGAAGGAACTCAAGAAGACCTAGAGT AGAAGTCCTTGATGAGGAATGAACTCAAGAAGACCTAGAGT < 41bp 0.645441214605817 0.880020896404777 NA NA prediction 0.46915936359792 Functional Gain - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112096081 chr7:112096080 stopgain 1.000 1 20 hm7G_associated_SNPs_23226 0 0 1 0 2 IFRD1 chr7:112096141 5'GT 112096141 Upstream 62bp 21432 chr1 48694552 48694552 1 + G T LUSC 48694553 + 48694533 48694573 41 TCTGATGTCCAGCAATGTGGGCAGTGGCTTGTTCATCGGCC TCTGATGTCCAGCAATGTGTGCAGTGGCTTGTTCATCGGCC < 41bp 0.402220586785834 0.734575495408343 NA NA prediction 0.469150990816686 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48694553 chr1:48694552 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23227 0 0 1 0 2 SLC5A9 chr1:48694522 3'AG 48694522 Downstream 31bp 21433 chr1 48694552 48694552 1 + G T LUSC 48694553 + 48694533 48694573 41 TCTGATGTCCAGCAATGTGGGCAGTGGCTTGTTCATCGGCC TCTGATGTCCAGCAATGTGTGCAGTGGCTTGTTCATCGGCC < 41bp 0.402220586785834 0.734575495408343 NA NA prediction 0.469150990816686 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48694553 chr1:48694552 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23227 0 0 1 0 2 SLC5A9 chr1:48694626 5'GT 48694626 Upstream 75bp 21434 chrX 35993977 35993977 1 + G T LUSC 35993978 + 35993958 35993998 41 TGTTGTGCTCAGTTTCAATGGCAACCCGTAAACACAGGAAG TGTTGTGCTCAGTTTCAATTGCAACCCGTAAACACAGGAAG < 41bp 0.400970139419412 0.73457386599854 NA NA prediction 0.46914773199708 Functional Gain - CFAP47 ENSG00000165164 CDS Human protein_coding chrX:35993978 chrX:35993977 nonsynonymous SNV 0.356 4 20 hm7G_associated_SNPs_23228 0 0 0 0 1 CFAP47 chrX:35994030 5'GT 35994030 Upstream 54bp 21435 chr1 57320623 57320623 1 + G T LUAD 57320624 + 57320604 57320644 41 TTTGATGACTTGTCAGCCTGGGGTAACTGCACAGGAGAAGG TTTGATGACTTGTCAGCCTTGGGTAACTGCACAGGAGAAGG < 41bp 0.416783454897907 0.734567575396657 NA NA prediction 0.469135150793314 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57320624 chr1:57320623 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23229 0 0 0 0 1 C8A chr1:57320651 5'GT 57320651 Upstream 29bp 21436 chr16 2474725 2474725 1 + G T UCEC 2474726 + 2474706 2474746 41 AGAGTGAAGGGCAGCAGGAGGTGCTGGAGGAGTTCAAGGCC AGAGTGAAGGGCAGCAGGATGTGCTGGAGGAGTTCAAGGCC < 41bp 0.432056447396231 0.734559091824818 NA NA prediction 0.469118183649636 Functional Gain - ABCA17P ENSG00000238098 ncRNA_exonic Human transcribed_unitary_pseudogene chr16:2474726 chr16:2474725 . . 0 20 hm7G_associated_SNPs_23230 0 0 0 0 1 ABCA17P chr16:2474768 5'GT 2474768 Upstream 44bp 21437 chrX 37553630 37553630 1 + G T GBM 37553631 + 37553611 37553651 41 GAGGCAAATGCCAAAAAATGGCCTCTCAGAGGAGATTGAGA GAGGCAAATGCCAAAAAATTGCCTCTCAGAGGAGATTGAGA < 41bp 0.650837144444094 0.885382517509241 NA NA prediction 0.469090746130294 Functional Gain - XK ENSG00000047597 CDS Human protein_coding chrX:37553631 chrX:37553630 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_23232 0 0 0 0 1 XK chrX:37553539 3'AG 37553539 Downstream 92bp 21438 chr22 32462975 32462975 1 + G T LUSC 32462976 + 32462956 32462996 41 GTGGCCACTTTGTGGGGCTGGCCGGGACTGGGGCAGCTTCA GTGGCCACTTTGTGGGGCTTGCCGGGACTGGGGCAGCTTCA < 41bp 0.65957472357615 0.89411926506321 NA NA prediction 0.469089082974119 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32462976 chr22:32462975 synonymous SNV . 0 20 hm7G_associated_SNPs_23233 0 0 0 0 2 SLC5A1 chr22:32462922 3'AG 32462922 Downstream 54bp 21439 chr22 32462975 32462975 1 + G T LUSC 32462976 + 32462956 32462996 41 GTGGCCACTTTGTGGGGCTGGCCGGGACTGGGGCAGCTTCA GTGGCCACTTTGTGGGGCTTGCCGGGACTGGGGCAGCTTCA < 41bp 0.65957472357615 0.89411926506321 NA NA prediction 0.469089082974119 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32462976 chr22:32462975 synonymous SNV . 0 20 hm7G_associated_SNPs_23233 0 0 0 0 2 SLC5A1 chr22:32463026 5'GT 32463026 Upstream 52bp 21440 chr9 130191176 130191176 1 + G T LUSC 130191177 + 130191157 130191197 41 AGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCC AGAGGAAGGAATGGCTGCTTGTCTCCTCACAGCTGGGCCCC < 41bp 0.393198915916172 0.734516501374925 NA NA prediction 0.46903300274985 Functional Gain - ZNF79 ENSG00000196152 CDS Human protein_coding chr9:130191177 chr9:130191176 nonsynonymous SNV 0.246 0 20 hm7G_associated_SNPs_23234 0 0 0 0 2 ZNF79 chr9:130191111 3'AG 130191111 Downstream 66bp 21441 chr9 130191176 130191176 1 + G T LUSC 130191177 + 130191157 130191197 41 AGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCC AGAGGAAGGAATGGCTGCTTGTCTCCTCACAGCTGGGCCCC < 41bp 0.393198915916172 0.734516501374925 NA NA prediction 0.46903300274985 Functional Gain - ZNF79 ENSG00000196152 CDS Human protein_coding chr9:130191177 chr9:130191176 nonsynonymous SNV 0.246 0 20 hm7G_associated_SNPs_23234 0 0 0 0 2 ZNF79 chr9:130191199 5'GT 130191199 Upstream 24bp 21442 chr14 35482617 35482617 1 + G T COAD 35482618 + 35482598 35482638 41 CTTGTGAAGCCCAGGCTAAGGCTTTTAAAGATAAAGTAGAT CTTGTGAAGCCCAGGCTAATGCTTTTAAAGATAAAGTAGAT < 41bp 0.650291849340633 0.884800133656304 NA NA prediction 0.469016568631341 Functional Gain - SRP54 ENSG00000100883 CDS Human protein_coding chr14:35482618 chr14:35482617 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23236 0 0 1 0 2 SRP54 chr14:35482552 3'AG 35482552 Downstream 66bp 21443 chr14 35482617 35482617 1 + G T COAD 35482618 + 35482598 35482638 41 CTTGTGAAGCCCAGGCTAAGGCTTTTAAAGATAAAGTAGAT CTTGTGAAGCCCAGGCTAATGCTTTTAAAGATAAAGTAGAT < 41bp 0.650291849340633 0.884800133656304 NA NA prediction 0.469016568631341 Functional Gain - SRP54 ENSG00000100883 CDS Human protein_coding chr14:35482618 chr14:35482617 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23236 0 0 1 0 2 SRP54 chr14:35482700 5'GT 35482700 Upstream 84bp 21444 chr3 36570437 36570437 1 + G T LUSC 36570438 + 36570418 36570458 41 TGTGTTAGAACCTTCATTGGGTGTAAGGAACAGGGGCAGAT TGTGTTAGAACCTTCATTGTGTGTAAGGAACAGGGGCAGAT < 41bp 0.630534679014089 0.865031319618946 NA NA prediction 0.468993281209715 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36570438 chr3:36570437 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_23237 0 0 0 0 2 STAC chr3:36570340 3'AG 36570340 Downstream 98bp 21445 chr3 36570437 36570437 1 + G T LUSC 36570438 + 36570418 36570458 41 TGTGTTAGAACCTTCATTGGGTGTAAGGAACAGGGGCAGAT TGTGTTAGAACCTTCATTGTGTGTAAGGAACAGGGGCAGAT < 41bp 0.630534679014089 0.865031319618946 NA NA prediction 0.468993281209715 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36570438 chr3:36570437 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_23237 0 0 0 0 2 STAC chr3:36570477 5'GT 36570477 Upstream 41bp 21446 chr16 81399002 81399002 1 + G T STAD 81399003 + 81398983 81399023 41 ATGGAGCTGTATGTGTTTGGGGGAGTCCGAAGTCGTGAGGA ATGGAGCTGTATGTGTTTGTGGGAGTCCGAAGTCGTGAGGA < 41bp 0.650917844041705 0.885413077692214 NA NA prediction 0.468990467301017 Functional Gain - GAN ENSG00000261609 CDS Human protein_coding chr16:81399003 chr16:81399002 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_23238 0 0 1 0 2 GAN chr16:81398955 3'AG 81398955 Downstream 48bp 21447 chr16 81399002 81399002 1 + G T STAD 81399003 + 81398983 81399023 41 ATGGAGCTGTATGTGTTTGGGGGAGTCCGAAGTCGTGAGGA ATGGAGCTGTATGTGTTTGTGGGAGTCCGAAGTCGTGAGGA < 41bp 0.650917844041705 0.885413077692214 NA NA prediction 0.468990467301017 Functional Gain - GAN ENSG00000261609 CDS Human protein_coding chr16:81399003 chr16:81399002 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_23238 0 0 1 0 2 GAN chr16:81399083 5'GT 81399083 Upstream 82bp 21448 chr10 5242151 5242151 1 + G T ESCA 5242152 + 5242132 5242172 41 TTGCTCCTTCAGGTTCCGAGGAACAGAGCTGTAGAGGTCAC TTGCTCCTTCAGGTTCCGATGAACAGAGCTGTAGAGGTCAC < 41bp 0.643268682647584 0.877759078140853 NA NA prediction 0.468980790986539 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5242152 chr10:5242151 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_23239 0 0 0 0 1 AKR1C4 chr10:5242144 3'AG 5242144 Downstream 8bp 21449 chr6 28253464 28253464 1 + G T UCEC 28253465 + 28253445 28253485 41 CCTCCACAGCGTCCTCAAGGGAACCCCCAAGAAGTGAGTGG CCTCCACAGCGTCCTCAAGTGAACCCCCAAGAAGTGAGTGG < 41bp 0.392337253663297 0.734482934645669 NA NA prediction 0.468965869291339 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28253465 chr6:28253464 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_23240 0 0 0 0 1 PGBD1 chr6:28253484 5'GT 28253484 Upstream 21bp 21450 chr18 633357 633357 1 + G T LUAD 633358 + 633338 633378 41 GCAGGACAGAGGACTGTGTGGGGAACTTGACCAGAATTTGT GCAGGACAGAGGACTGTGTTGGGAACTTGACCAGAATTTGT < 41bp 0.398672875037459 0.734482100768707 NA NA prediction 0.468964201537414 Functional Gain - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633358 chr18:633357 nonsynonymous SNV 0.736 3 20 hm7G_associated_SNPs_23241 0 0 0 0 2 CLUL1 chr18:633298 3'AG 633298 Downstream 60bp 21451 chr18 633357 633357 1 + G T LUAD 633358 + 633338 633378 41 GCAGGACAGAGGACTGTGTGGGGAACTTGACCAGAATTTGT GCAGGACAGAGGACTGTGTTGGGAACTTGACCAGAATTTGT < 41bp 0.398672875037459 0.734482100768707 NA NA prediction 0.468964201537414 Functional Gain - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:633358 chr18:633357 nonsynonymous SNV 0.736 3 20 hm7G_associated_SNPs_23241 0 0 0 0 2 CLUL1 chr18:633435 5'GT 633435 Upstream 79bp 21452 chrX 10078010 10078010 1 + G T UCEC 10078011 + 10077991 10078031 41 AGGAGCGGGAGCGCCTAGAGGAGGAGCTGCGGCGTGCACGG AGGAGCGGGAGCGCCTAGATGAGGAGCTGCGGCGTGCACGG < 41bp 0.496924764624214 0.734479646640704 NA NA prediction 0.468959293281408 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10078011 chrX:10078010 nonsynonymous SNV 0.717 3 20 hm7G_associated_SNPs_23242 0 0 0 0 1 WWC3 chrX:10078060 5'GT 10078060 Upstream 51bp 21453 chr19 22785287 22785287 1 + G T LUSC 22785288 + 22785268 22785308 41 TGTGTGGGGGGACCCACCGGGCCCTGCAGGGTGCCATGGAG TGTGTGGGGGGACCCACCGTGCCCTGCAGGGTGCCATGGAG < 41bp 0.417966909482253 0.734471346075632 NA NA prediction 0.468942692151263 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22785288 chr19:22785287 . . 0 20 hm7G_associated_SNPs_23243 0 0 0 0 1 GOLGA2P9 chr19:22785317 5'GT 22785317 Upstream 31bp 21454 chr9 136402574 136402574 1 + G A UCEC 136402575 + 136402555 136402595 41 AGGGGGGCACCGACGCCACGGCCTTCTGGTGGGGGGAGTGG AGGGGGGCACCGACGCCACAGCCTTCTGGTGGGGGGAGTGG < 41bp 0.497746086704487 0.734461321141461 NA NA prediction 0.468922642282921 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136402575 chr9:136402574 synonymous SNV . 0 20 hm7G_associated_SNPs_23244 0 0 0 0 2 ADAMTSL2 chr9:136402527 3'AG 136402527 Downstream 48bp 21455 chr9 136402574 136402574 1 + G A UCEC 136402575 + 136402555 136402595 41 AGGGGGGCACCGACGCCACGGCCTTCTGGTGGGGGGAGTGG AGGGGGGCACCGACGCCACAGCCTTCTGGTGGGGGGAGTGG < 41bp 0.497746086704487 0.734461321141461 NA NA prediction 0.468922642282921 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136402575 chr9:136402574 synonymous SNV . 0 20 hm7G_associated_SNPs_23244 0 0 0 0 2 ADAMTSL2 chr9:136402669 5'GT 136402669 Upstream 96bp 21456 chrX 47426699 47426699 1 + G T UCEC 47426700 + 47426680 47426720 41 GAGGTGCAGCTGCTGAAGAGGATCGGGACGGGCTCGTTTGG GAGGTGCAGCTGCTGAAGATGATCGGGACGGGCTCGTTTGG < 41bp 0.654825529058221 0.889274145139565 NA NA prediction 0.468897232162689 Functional Gain - ARAF ENSG00000078061 CDS Human protein_coding chrX:47426700 chrX:47426699 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_23246 0 0 1 0 1 ARAF chrX:47426629 3'AG 47426629 Downstream 71bp 21457 chr11 43333692 43333692 1 + G T UCEC 43333693 + 43333673 43333713 41 TCACCATGCCGACAGTAGAGGAGCTTTACCGCAATTATGGC TCACCATGCCGACAGTAGATGAGCTTTACCGCAATTATGGC < 41bp 0.548651096309972 0.783097102481164 NA NA prediction 0.468892012342383 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43333693 chr11:43333692 nonsynonymous SNV 0.952 3 20 hm7G_associated_SNPs_23247 0 0 1 0 1 API5 chr11:43333746 5'GT 43333746 Upstream 55bp 21458 chr7 154738448 154738448 1 - C A UCEC 154738447 - 154738427 154738467 41 AATCGTAGAGTGTGCAGGAGGAAAGGTGTTATCCAAGCAGC AATCGTAGAGTGTGCAGGATGAAAGGTGTTATCCAAGCAGC < 41bp 0.649387230192346 0.88380548307058 NA NA prediction 0.468836505756468 Functional Gain - PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738447 chr7:154738448 stopgain 0.116 0 20 hm7G_associated_SNPs_23251 0 0 1 0 2 PAXIP1 chr7:154738389 5'GT 154738389 Upstream 60bp 21459 chr7 154738448 154738448 1 - C A UCEC 154738447 - 154738427 154738467 41 AATCGTAGAGTGTGCAGGAGGAAAGGTGTTATCCAAGCAGC AATCGTAGAGTGTGCAGGATGAAAGGTGTTATCCAAGCAGC < 41bp 0.649387230192346 0.88380548307058 NA NA prediction 0.468836505756468 Functional Gain - PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738447 chr7:154738448 stopgain 0.116 0 20 hm7G_associated_SNPs_23251 0 0 1 0 2 PAXIP1 chr7:154738523 3'AG 154738523 Downstream 76bp 21460 chr1 244849965 244849965 1 + G T SARC 244849966 + 244849946 244849986 41 TTCAGGAATTGAAGTCTATGGCAGAGGTACGTGTACACACA TTCAGGAATTGAAGTCTATTGCAGAGGTACGTGTACACACA < 41bp 0.64419450094734 0.878581983850654 NA NA prediction 0.468774965806627 Functional Gain - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244849966 chr1:244849965 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23253 0 0 1 0 2 DESI2 chr1:244849899 3'AG 244849899 Downstream 67bp 21461 chr1 244849965 244849965 1 + G T SARC 244849966 + 244849946 244849986 41 TTCAGGAATTGAAGTCTATGGCAGAGGTACGTGTACACACA TTCAGGAATTGAAGTCTATTGCAGAGGTACGTGTACACACA < 41bp 0.64419450094734 0.878581983850654 NA NA prediction 0.468774965806627 Functional Gain - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244849966 chr1:244849965 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23253 0 0 1 0 2 DESI2 chr1:244849971 5'GT 244849971 Upstream 7bp 21462 chr6 43470020 43470020 1 + G T GBM 43470021 + 43470001 43470041 41 CTTGTATTATCCCTTTTCAGGCTGCAGAACAGCTACACGGC CTTGTATTATCCCTTTTCATGCTGCAGAACAGCTACACGGC < 41bp 0.614660154094699 0.849041525221584 NA NA prediction 0.468762742253772 Functional Gain - TJAP1 ENSG00000137221 splicing Human protein_coding chr6:43470021 chr6:43470020 . 0.864 0 20 hm7G_associated_SNPs_23254 0 0 1 0 1 TJAP1 chr6:43470087 5'GT 43470087 Upstream 68bp 21463 chr15 41870153 41870153 1 + G T STAD 41870154 + 41870134 41870174 41 GCTTTACTTGTCTGCGAATGGAACTGGAGAACATCTTGGGC GCTTTACTTGTCTGCGAATTGAACTGGAGAACATCTTGGGC < 41bp 0.644912314226175 0.879267131706951 NA NA prediction 0.468709634961551 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41870154 chr15:41870153 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_23257 0 0 1 0 1 TYRO3 chr15:41870084 3'AG 41870084 Downstream 70bp 21464 chr10 90354509 90354509 1 + G T SARC 90354510 + 90354490 90354530 41 AGAGGAAATATTTTATGTAGGCCATTCACAGGGTACTACTA AGAGGAAATATTTTATGTATGCCATTCACAGGGTACTACTA < 41bp 0.628437675779157 0.862791824396036 NA NA prediction 0.468708297233757 Functional Gain - LIPJ ENSG00000204022 CDS Human protein_coding chr10:90354510 chr10:90354509 nonsynonymous SNV 0.411 4 20 hm7G_associated_SNPs_23258 0 0 0 0 2 LIPJ chr10:90354424 3'AG 90354424 Downstream 86bp 21465 chr10 90354509 90354509 1 + G T SARC 90354510 + 90354490 90354530 41 AGAGGAAATATTTTATGTAGGCCATTCACAGGGTACTACTA AGAGGAAATATTTTATGTATGCCATTCACAGGGTACTACTA < 41bp 0.628437675779157 0.862791824396036 NA NA prediction 0.468708297233757 Functional Gain - LIPJ ENSG00000204022 CDS Human protein_coding chr10:90354510 chr10:90354509 nonsynonymous SNV 0.411 4 20 hm7G_associated_SNPs_23258 0 0 0 0 2 LIPJ chr10:90354533 5'GT 90354533 Upstream 25bp 21466 chr22 18978303 18978303 1 + G T rs61736230 18978304 + 18978284 18978324 41 GCCCAGGGCCTGGCACCGAGGGGGAGGCCCCGATCAGCAGG GCCCAGGGCCTGGCACCGATGGGGAGGCCCCGATCAGCAGG < 41bp 0.383398639851827 0.734352689795173 NA NA prediction 0.468705379590346 Functional Gain - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18978304 chr22:18978303 . . 0 20 hm7G_associated_SNPs_23259 0 0 0 0 1 DGCR5 chr22:18978233 3'AG 18978233 Downstream 71bp 21467 chr10 71695113 71695113 1 + G T LUSC 71695114 + 71695094 71695134 41 TTTGGCTTTTAGGTTCCTGGGCTGCCAGGGCCAGAGGGGCC TTTGGCTTTTAGGTTCCTGTGCTGCCAGGGCCAGAGGGGCC < 41bp 0.650707012843789 0.885058079656533 NA NA prediction 0.46870213362549 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695114 chr10:71695113 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_23260 0 0 0 0 2 COL13A1 chr10:71695106 3'AG 71695106 Downstream 8bp 21468 chr10 71695113 71695113 1 + G T LUSC 71695114 + 71695094 71695134 41 TTTGGCTTTTAGGTTCCTGGGCTGCCAGGGCCAGAGGGGCC TTTGGCTTTTAGGTTCCTGTGCTGCCAGGGCCAGAGGGGCC < 41bp 0.650707012843789 0.885058079656533 NA NA prediction 0.46870213362549 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695114 chr10:71695113 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_23260 0 0 0 0 2 COL13A1 chr10:71695147 5'GT 71695147 Upstream 35bp 21469 chr12 56397469 56397469 1 + G T COAD 56397470 + 56397450 56397490 41 CACACCAGCCCTGAGACTGGGATCTGGGTGACTCTGGGCTC CACACCAGCCCTGAGACTGTGATCTGGGTGACTCTGGGCTC < 41bp 0.646793970376862 0.88113239433073 NA NA prediction 0.468676847907737 Functional Gain - SUOX ENSG00000139531 CDS Human protein_coding chr12:56397470 chr12:56397469 nonsynonymous SNV 0.550 0 20 hm7G_associated_SNPs_23261 0 0 1 0 1 SUOX chr12:56397402 3'AG 56397402 Downstream 68bp 21470 chr20 61959304 61959304 1 + G T LUSC 61959305 + 61959285 61959325 41 CTCTTCCCCTCCTCATCAGGGACTGCCAGGGCCCAAAGGGG CTCTTCCCCTCCTCATCAGTGACTGCCAGGGCCCAAAGGGG < 41bp 0.400967617334421 0.734308208508966 NA NA prediction 0.468616417017932 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61959305 chr20:61959304 stopgain 0.142 0 20 hm7G_associated_SNPs_23264 0 0 0 0 2 COL20A1 chr20:61959304 3'AG 61959304 Downstream 1bp 21471 chr20 61959304 61959304 1 + G T LUSC 61959305 + 61959285 61959325 41 CTCTTCCCCTCCTCATCAGGGACTGCCAGGGCCCAAAGGGG CTCTTCCCCTCCTCATCAGTGACTGCCAGGGCCCAAAGGGG < 41bp 0.400967617334421 0.734308208508966 NA NA prediction 0.468616417017932 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61959305 chr20:61959304 stopgain 0.142 0 20 hm7G_associated_SNPs_23264 0 0 0 0 2 COL20A1 chr20:61959339 5'GT 61959339 Upstream 36bp 21472 chr10 37418836 37418836 1 + G T LUAD 37418837 + 37418817 37418857 41 GTAGGACTGCTCTACACTGGGCCTGTGTCAATGGCCATGAG GTAGGACTGCTCTACACTGTGCCTGTGTCAATGGCCATGAG < 41bp 0.422313079386192 0.734302929441434 NA NA prediction 0.468605858882867 Functional Gain - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37418837 chr10:37418836 nonsynonymous SNV 0.212 3 20 hm7G_associated_SNPs_23265 0 0 0 0 2 ANKRD30A chr10:37418821 3'AG 37418821 Downstream 16bp 21473 chr10 37418836 37418836 1 + G T LUAD 37418837 + 37418817 37418857 41 GTAGGACTGCTCTACACTGGGCCTGTGTCAATGGCCATGAG GTAGGACTGCTCTACACTGTGCCTGTGTCAATGGCCATGAG < 41bp 0.422313079386192 0.734302929441434 NA NA prediction 0.468605858882867 Functional Gain - ANKRD30A ENSG00000148513 CDS Human protein_coding chr10:37418837 chr10:37418836 nonsynonymous SNV 0.212 3 20 hm7G_associated_SNPs_23265 0 0 0 0 2 ANKRD30A chr10:37418935 5'GT 37418935 Upstream 100bp 21474 chr19 49671848 49671848 1 + G T LUAD 49671849 + 49671829 49671869 41 ACCGGTGGCGCGGTGACCCGGAGGACGGGGTCCAGTTTCCC ACCGGTGGCGCGGTGACCCTGAGGACGGGGTCCAGTTTCCC < 41bp 0.379771079822475 0.734243973801678 NA NA prediction 0.468487947603357 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671849 chr19:49671848 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_23266 0 0 1 0 1 TRPM4 chr19:49671810 3'AG 49671810 Downstream 39bp 21475 chr16 67290894 67290894 1 + G T SARC 67290895 + 67290875 67290915 41 CCAAGTGGTGATGTCCTATGGGGGCCTGCGGGGGGCTGTGG CCAAGTGGTGATGTCCTATTGGGGCCTGCGGGGGGCTGTGG < 41bp 0.667564844010439 0.901806975482194 NA NA prediction 0.46848426294351 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67290895 chr16:67290894 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23267 0 0 0 0 1 SLC9A5 chr16:67290814 3'AG 67290814 Downstream 81bp 21476 chr17 73201862 73201862 1 + G T UCEC 73201863 + 73201843 73201883 41 TGGGGTTCGGCGCTATGGAGGAGCTCGATGGCGAGCCAACA TGGGGTTCGGCGCTATGGATGAGCTCGATGGCGAGCCAACA < 41bp 0.637020309834399 0.871238008846365 NA NA prediction 0.468435398023933 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73201863 chr17:73201862 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_23270 0 0 1 0 1 NUP85 chr17:73201889 5'GT 73201889 Upstream 28bp 21477 chr2 219537612 219537612 1 + G T GBM 219537613 + 219537593 219537633 41 CTTTTGGGAGGGTGTACAAGGGTCGAAGAAAATACAGTGCT CTTTTGGGAGGGTGTACAATGGTCGAAGAAAATACAGTGCT < 41bp 0.654155218692294 0.888366717010099 NA NA prediction 0.46842299663561 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219537613 chr2:219537612 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23271 0 0 1 0 1 STK36 chr2:219537636 5'GT 219537636 Upstream 25bp 21478 chr11 63666239 63666239 1 + G T GBM 63666240 + 63666220 63666260 41 CCTGGTCTCTTACAGGAGAGGTATTTGATTACCTAGTGGCT CCTGGTCTCTTACAGGAGATGTATTTGATTACCTAGTGGCT < 41bp 0.399900339754315 0.734163779524954 NA NA prediction 0.468327559049907 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63666240 chr11:63666239 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_23274 0 0 1 0 2 MARK2 chr11:63666235 3'AG 63666235 Downstream 5bp 21479 chr11 63666239 63666239 1 + G T GBM 63666240 + 63666220 63666260 41 CCTGGTCTCTTACAGGAGAGGTATTTGATTACCTAGTGGCT CCTGGTCTCTTACAGGAGATGTATTTGATTACCTAGTGGCT < 41bp 0.399900339754315 0.734163779524954 NA NA prediction 0.468327559049907 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63666240 chr11:63666239 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_23274 0 0 1 0 2 MARK2 chr11:63666305 5'GT 63666305 Upstream 67bp 21480 chr1 171756912 171756912 1 + G T LUSC 171756913 + 171756893 171756933 41 GGTGGGGACATTGGGGTCCGGACCGTTCAGCACCAAGACTG GGTGGGGACATTGGGGTCCTGACCGTTCAGCACCAAGACTG < 41bp 0.387425739741319 0.734162876768682 NA NA prediction 0.468325753537364 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756913 chr1:171756912 nonsynonymous SNV 0.874 4 20 hm7G_associated_SNPs_23275 0 0 1 0 1 METTL13 chr1:171756875 3'AG 171756875 Downstream 38bp 21481 chr10 82369182 82369182 1 + G T LUSC 82369183 + 82369163 82369203 41 ACTTTCTTTCTCTTCAGCAGGACCTGGGAGCGCCCGCTGCG ACTTTCTTTCTCTTCAGCATGACCTGGGAGCGCCCGCTGCG < 41bp 0.645326159632487 0.87946063289829 NA NA prediction 0.468268946531606 Functional Gain - SH2D4B;SH2D4B ENSG00000178217;ENSG00000178217 exonic;splicing Human protein_coding chr10:82369183 chr10:82369182 nonsynonymous SNV 0.075 1 20 hm7G_associated_SNPs_23276 0 0 0 0 1 SH2D4B chr10:82369180 3'AG 82369180 Downstream 3bp 21482 chr2 74782358 74782358 1 + G T LUAD 74782359 + 74782339 74782379 41 TCGAGTTCTTTGACCATAAGGGGTCGAGCTCTGGGGGTGGC TCGAGTTCTTTGACCATAATGGGTCGAGCTCTGGGGGTGGC < 41bp 0.399337024695977 0.734101895309935 NA NA prediction 0.46820379061987 Functional Gain - DOK1 ENSG00000115325 CDS Human protein_coding chr2:74782359 chr2:74782358 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_23283 0 0 0 0 1 DOK1;DOK1 chr2:74782281 3'AG 74782281 Downstream 78bp 21483 chr1 3542384 3542384 1 + G T BLCA 3542385 + 3542365 3542405 41 CAGTGCCAGCAGGTGGTGCGGATAGCGCTCAACGCAGTAGA CAGTGCCAGCAGGTGGTGCTGATAGCGCTCAACGCAGTAGA < 41bp 0.654481102166735 0.88856728101584 NA NA prediction 0.46817235769821 Functional Gain - TPRG1L ENSG00000158109 CDS Human protein_coding chr1:3542385 chr1:3542384 nonsynonymous SNV 0.165 2 20 hm7G_associated_SNPs_23284 0 0 1 0 1 TPRG1L chr1:3542453 5'GT 3542453 Upstream 70bp 21484 chr4 40154443 40154443 1 + G T TGCT 40154444 + 40154424 40154464 41 CCTATTTGTCTGTGATTACGGGGAGAGGAAACCACAGCCAG CCTATTTGTCTGTGATTACTGGGAGAGGAAACCACAGCCAG < 41bp 0.636750127918261 0.870812612018751 NA NA prediction 0.46812496820098 Functional Gain - N4BP2 ENSG00000078177 CDS Human protein_coding chr4:40154444 chr4:40154443 synonymous SNV . 0 20 hm7G_associated_SNPs_23286 0 0 1 0 2 N4BP2 chr4:40154400 3'AG 40154400 Downstream 44bp 21485 chr4 40154443 40154443 1 + G T TGCT 40154444 + 40154424 40154464 41 CCTATTTGTCTGTGATTACGGGGAGAGGAAACCACAGCCAG CCTATTTGTCTGTGATTACTGGGAGAGGAAACCACAGCCAG < 41bp 0.636750127918261 0.870812612018751 NA NA prediction 0.46812496820098 Functional Gain - N4BP2 ENSG00000078177 CDS Human protein_coding chr4:40154444 chr4:40154443 synonymous SNV . 0 20 hm7G_associated_SNPs_23286 0 0 1 0 2 N4BP2 chr4:40154523 5'GT 40154523 Upstream 81bp 21486 chr1 47550303 47550303 1 + G T UCEC 47550304 + 47550284 47550324 41 TGCCCCAGAACAAATGGGAGGAACACATTGCCCAAAACTCA TGCCCCAGAACAAATGGGATGAACACATTGCCCAAAACTCA < 41bp 0.428171319158504 0.734040447388807 NA NA prediction 0.468080894777614 Functional Gain - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47550304 chr1:47550303 nonsynonymous SNV 0.007 2 20 hm7G_associated_SNPs_23287 0 0 0 0 1 CYP4Z1 chr1:47550292 3'AG 47550292 Downstream 12bp 21487 chr12 75741429 75741429 1 + G T LIHC 75741430 + 75741410 75741450 41 GGCCAATTCATTTTATGTCGGTTGTGCAGTTGCAATGTGTC GGCCAATTCATTTTATGTCTGTTGTGCAGTTGCAATGTGTC < 41bp 0.629268859940075 0.863309211559652 NA NA prediction 0.468080703239155 Functional Gain - GLIPR1L1 ENSG00000173401 CDS Human protein_coding chr12:75741430 chr12:75741429 nonsynonymous SNV 0.024 5 20 hm7G_associated_SNPs_23288 0 0 0 0 2 GLIPR1L1 chr12:75741402 3'AG 75741402 Downstream 28bp 21488 chr12 75741429 75741429 1 + G T LIHC 75741430 + 75741410 75741450 41 GGCCAATTCATTTTATGTCGGTTGTGCAGTTGCAATGTGTC GGCCAATTCATTTTATGTCTGTTGTGCAGTTGCAATGTGTC < 41bp 0.629268859940075 0.863309211559652 NA NA prediction 0.468080703239155 Functional Gain - GLIPR1L1 ENSG00000173401 CDS Human protein_coding chr12:75741430 chr12:75741429 nonsynonymous SNV 0.024 5 20 hm7G_associated_SNPs_23288 0 0 0 0 2 GLIPR1L1 chr12:75741502 5'GT 75741502 Upstream 74bp 21489 chr17 16594049 16594049 1 + G T UCEC 16594050 + 16594030 16594070 41 GGCGTGGACAAGAGGGATAGGAAGAAGAGGTAATGGCCAGG GGCGTGGACAAGAGGGATATGAAGAAGAGGTAATGGCCAGG < 41bp 0.637730936247439 0.87176928593949 NA NA prediction 0.468076699384102 Functional Gain - CCDC144A ENSG00000170160;ENSG00000266302 CDS Human other chr17:16594050 chr17:16594049 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_23289 0 0 0 0 1 CCDC144A chr17:16594058 5'GT 16594058 Upstream 10bp 21490 chr18 28914145 28914145 1 + G T LUAD 28914146 + 28914126 28914166 41 GAATGAAAGAACAAATGTGGGAATTTTAAAGGTTGTTAAGG GAATGAAAGAACAAATGTGTGAATTTTAAAGGTTGTTAAGG < 41bp 0.429597167951243 0.734028546476223 NA NA prediction 0.468057092952447 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28914146 chr18:28914145 stopgain 0.995 1 20 hm7G_associated_SNPs_23290 0 0 0 0 1 DSG1 chr18:28914165 5'GT 28914165 Upstream 21bp 21491 chr16 56947198 56947198 1 + G T COAD 56947199 + 56947179 56947219 41 TTTGCCCATAGGGAGGAAGGGGAAGTGCCCCAGCTCGCTGT TTTGCCCATAGGGAGGAAGTGGAAGTGCCCCAGCTCGCTGT < 41bp 0.643636421504499 0.877636599882807 NA NA prediction 0.468000356756617 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56947199 chr16:56947198 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23292 0 0 0 0 1 SLC12A3 chr16:56947176 3'AG 56947176 Downstream 23bp 21492 chr1 15708575 15708575 1 + G T UCEC 15708576 + 15708556 15708596 41 CGCAGGTGGCAAAGCTGGAGGATGATATCTACAAAGAGGCC CGCAGGTGGCAAAGCTGGATGATGATATCTACAAAGAGGCC < 41bp 0.400127092828076 0.73398094883392 NA NA prediction 0.467961897667839 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15708576 chr1:15708575 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_23293 0 0 0 0 1 FHAD1 chr1:15708524 3'AG 15708524 Downstream 52bp 21493 chr19 52817450 52817450 1 + G T LUSC 52817451 + 52817431 52817471 41 CCATAGAATTCTCTCAGGCGGAGTGGAAATGCCTGGACCCT CCATAGAATTCTCTCAGGCTGAGTGGAAATGCCTGGACCCT < 41bp 0.642883207741368 0.876838004445785 NA NA prediction 0.467909593408834 Functional Gain - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817451 chr19:52817450 synonymous SNV . 0 20 hm7G_associated_SNPs_23295 0 0 1 0 2 ZNF480 chr19:52817406 3'AG 52817406 Downstream 45bp 21494 chr19 52817450 52817450 1 + G T LUSC 52817451 + 52817431 52817471 41 CCATAGAATTCTCTCAGGCGGAGTGGAAATGCCTGGACCCT CCATAGAATTCTCTCAGGCTGAGTGGAAATGCCTGGACCCT < 41bp 0.642883207741368 0.876838004445785 NA NA prediction 0.467909593408834 Functional Gain - ZNF480 ENSG00000198464 CDS Human protein_coding chr19:52817451 chr19:52817450 synonymous SNV . 0 20 hm7G_associated_SNPs_23295 0 0 1 0 2 ZNF480 chr19:52817532 5'GT 52817532 Upstream 83bp 21495 chr8 69434170 69434170 1 + G T LIHC 69434171 + 69434151 69434191 41 AGAAGCAAAAATGACCAATGGGAAAGTGAAGATAGTGGCTC AGAAGCAAAAATGACCAATTGGAAAGTGAAGATAGTGGCTC < 41bp 0.418049372209939 0.733937896296889 NA NA prediction 0.467875792593778 Functional Gain - C8orf34 ENSG00000165084 CDS Human protein_coding chr8:69434171 chr8:69434170 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_23296 0 0 0 0 1 C8orf34 chr8:69434206 5'GT 69434206 Upstream 37bp 21496 chr16 84027937 84027937 1 + G T LUSC 84027938 + 84027918 84027958 41 TCAAACCCAGCCACAGCGCGGCACAGACCTGGTGTGGAAGC TCAAACCCAGCCACAGCGCTGCACAGACCTGGTGTGGAAGC < 41bp 0.659164648236643 0.8930908632076 NA NA prediction 0.467852429941914 Functional Gain - NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84027938 chr16:84027937 synonymous SNV . 0 20 hm7G_associated_SNPs_23297 0 0 0 0 2 NECAB2 chr16:84027907 3'AG 84027907 Downstream 31bp 21497 chr16 84027937 84027937 1 + G T LUSC 84027938 + 84027918 84027958 41 TCAAACCCAGCCACAGCGCGGCACAGACCTGGTGTGGAAGC TCAAACCCAGCCACAGCGCTGCACAGACCTGGTGTGGAAGC < 41bp 0.659164648236643 0.8930908632076 NA NA prediction 0.467852429941914 Functional Gain - NECAB2 ENSG00000103154 CDS Human protein_coding chr16:84027938 chr16:84027937 synonymous SNV . 0 20 hm7G_associated_SNPs_23297 0 0 0 0 2 NECAB2 chr16:84028025 5'GT 84028025 Upstream 89bp 21498 chr19 56565117 56565117 1 + G T LUAD 56565118 + 56565098 56565138 41 AATGCCCTGGGTGACGGTGGGGTTGCTGCGCTGTGCGAGGG AATGCCCTGGGTGACGGTGTGGTTGCTGCGCTGTGCGAGGG < 41bp 0.651124751071856 0.885034448543431 NA NA prediction 0.46781939494315 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565118 chr19:56565117 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_23300 0 0 0 0 1 NLRP5 chr19:56565174 5'GT 56565174 Upstream 58bp 21499 chr19 49129618 49129618 1 + G T rs200771360 49129619 + 49129599 49129639 41 TGCCACTGCCCGGGGATGGGGGTGAGGTGCTGGGCAGCTGC TGCCACTGCCCGGGGATGGTGGTGAGGTGCTGGGCAGCTGC < 41bp 0.404406753218735 0.733897228252823 NA NA prediction 0.467794456505645 Functional Gain - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49129619 chr19:49129618 synonymous SNV . 0 20 hm7G_associated_SNPs_23301 0 0 0 0 1 SPHK2 chr19:49129619 5'GT 49129619 Upstream 2bp 21500 chr14 69799877 69799877 1 + G T UCEC 69799878 + 69799858 69799898 41 ACCCGGACAGACCCCACCAGGCCCATAAGGTCAGAGCTGCG ACCCGGACAGACCCCACCATGCCCATAAGGTCAGAGCTGCG < 41bp 0.380006817827981 0.733889574404542 NA NA prediction 0.467779148809083 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69799878 chr14:69799877 nonsynonymous SNV 0.828 0 20 hm7G_associated_SNPs_23302 0 0 0 0 1 GALNT16 chr14:69799886 5'GT 69799886 Upstream 10bp 21501 chr11 6964366 6964366 1 + G T LUSC 6964367 + 6964347 6964387 41 TTCAGCAAGGAAGAGTGGGGGCAACTGGACTCTGCTGTAAA TTCAGCAAGGAAGAGTGGGTGCAACTGGACTCTGCTGTAAA < 41bp 0.415132797948604 0.73387942659152 NA NA prediction 0.46775885318304 Functional Gain - ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6964367 chr11:6964366 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_23303 0 0 0 0 2 ZNF215 chr11:6964314 3'AG 6964314 Downstream 53bp 21502 chr11 6964366 6964366 1 + G T LUSC 6964367 + 6964347 6964387 41 TTCAGCAAGGAAGAGTGGGGGCAACTGGACTCTGCTGTAAA TTCAGCAAGGAAGAGTGGGTGCAACTGGACTCTGCTGTAAA < 41bp 0.415132797948604 0.73387942659152 NA NA prediction 0.46775885318304 Functional Gain - ZNF215 ENSG00000149054 CDS Human protein_coding chr11:6964367 chr11:6964366 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_23303 0 0 0 0 2 ZNF215 chr11:6964446 5'GT 6964446 Upstream 81bp 21503 chr4 2717790 2717790 1 + G T UCEC 2717791 + 2717771 2717811 41 ATATTGACCTAGACAGTGTGGATATGGATGAGACAGAGAGG ATATTGACCTAGACAGTGTTGATATGGATGAGACAGAGAGG < 41bp 0.651687329592116 0.885560550119375 NA NA prediction 0.467746441054518 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2717791 chr4:2717790 synonymous SNV . 0 20 hm7G_associated_SNPs_23304 0 0 1 0 2 FAM193A chr4:2717750 3'AG 2717750 Downstream 41bp 21504 chr4 2717790 2717790 1 + G T UCEC 2717791 + 2717771 2717811 41 ATATTGACCTAGACAGTGTGGATATGGATGAGACAGAGAGG ATATTGACCTAGACAGTGTTGATATGGATGAGACAGAGAGG < 41bp 0.651687329592116 0.885560550119375 NA NA prediction 0.467746441054518 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2717791 chr4:2717790 synonymous SNV . 0 20 hm7G_associated_SNPs_23304 0 0 1 0 2 FAM193A chr4:2717831 5'GT 2717831 Upstream 42bp 21505 chr14 73413858 73413858 1 + G T LIHC 73413859 + 73413839 73413879 41 TTCCTCACCAGGTGAATTCGGTGTGCTGGGCCTCGCTGAAT TTCCTCACCAGGTGAATTCTGTGTGCTGGGCCTCGCTGAAT < 41bp 0.405923440708141 0.733864441781739 NA NA prediction 0.467728883563479 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73413859 chr14:73413858 synonymous SNV . 0 20 hm7G_associated_SNPs_23305 0 0 1 0 2 DCAF4 chr14:73413850 3'AG 73413850 Downstream 9bp 21506 chr14 73413858 73413858 1 + G T LIHC 73413859 + 73413839 73413879 41 TTCCTCACCAGGTGAATTCGGTGTGCTGGGCCTCGCTGAAT TTCCTCACCAGGTGAATTCTGTGTGCTGGGCCTCGCTGAAT < 41bp 0.405923440708141 0.733864441781739 NA NA prediction 0.467728883563479 Functional Gain - DCAF4 ENSG00000119599 CDS Human protein_coding chr14:73413859 chr14:73413858 synonymous SNV . 0 20 hm7G_associated_SNPs_23305 0 0 1 0 2 DCAF4 chr14:73413899 5'GT 73413899 Upstream 42bp 21507 chr8 42177130 42177130 1 + G T UCEC 42177131 + 42177111 42177151 41 AAACTGCTGCTGGCCTGGAGGGAAATGGAGCAGGCTGTGGA AAACTGCTGCTGGCCTGGATGGAAATGGAGCAGGCTGTGGA < 41bp 0.649302148413117 0.883161519630356 NA NA prediction 0.467718742434478 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42177131 chr8:42177130 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_23307 0 0 1 1 2 IKBKB chr8:42177103 3'AG 42177103 Downstream 28bp 21508 chr8 42177130 42177130 1 + G T UCEC 42177131 + 42177111 42177151 41 AAACTGCTGCTGGCCTGGAGGGAAATGGAGCAGGCTGTGGA AAACTGCTGCTGGCCTGGATGGAAATGGAGCAGGCTGTGGA < 41bp 0.649302148413117 0.883161519630356 NA NA prediction 0.467718742434478 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42177131 chr8:42177130 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_23307 0 0 1 1 2 IKBKB chr8:42177164 5'GT 42177164 Upstream 35bp 21509 chr19 19218750 19218750 1 + G T KIRP 19218751 + 19218731 19218771 41 CGCATCTCGAGAGAAGAGGGGCTGAAGACTCTCTACCATGG CGCATCTCGAGAGAAGAGGTGCTGAAGACTCTCTACCATGG < 41bp 0.653830461526066 0.887687153646814 NA NA prediction 0.467713384241495 Functional Gain - SLC25A42 ENSG00000181035 CDS Human protein_coding chr19:19218751 chr19:19218750 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_23308 0 0 1 0 1 SLC25A42 chr19:19218703 3'AG 19218703 Downstream 48bp 21510 chr7 143018909 143018909 1 + G T OV 143018910 + 143018890 143018930 41 GGTTGTCGCCCTGACTGCGGGCCTGGGCAGTGGCATCCCCG GGTTGTCGCCCTGACTGCGTGCCTGGGCAGTGGCATCCCCG < 41bp 0.665203976521423 0.899031440150801 NA NA prediction 0.467654927258758 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018910 chr7:143018909 nonsynonymous SNV 0.079 5 20 hm7G_associated_SNPs_23309 0 0 0 0 1 CLCN1 chr7:143018941 5'GT 143018941 Upstream 33bp 21511 chr22 21947231 21947231 1 + G T SKCM 21947232 + 21947212 21947252 41 TAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGTGAGTA TAATTTATTGACTTGGCAATGGCTTATTGTTCCTGTGAGTA < 41bp 0.402264860888341 0.733818122081747 NA NA prediction 0.467636244163493 Functional Gain - UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21947232 chr22:21947231 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23311 0 0 1 1 2 UBE2L3 chr22:21947150 3'AG 21947150 Downstream 82bp 21512 chr22 21947231 21947231 1 + G T SKCM 21947232 + 21947212 21947252 41 TAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGTGAGTA TAATTTATTGACTTGGCAATGGCTTATTGTTCCTGTGAGTA < 41bp 0.402264860888341 0.733818122081747 NA NA prediction 0.467636244163493 Functional Gain - UBE2L3 ENSG00000185651 CDS Human protein_coding chr22:21947232 chr22:21947231 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23311 0 0 1 1 2 UBE2L3 chr22:21947245 5'GT 21947245 Upstream 15bp 21513 chr1 2493171 2493171 1 + G T LUSC 2493172 + 2493152 2493192 41 AGCTCCCACTGGGTATGGTGGTTTCTCTCAGGGAGCCTCGT AGCTCCCACTGGGTATGGTTGTTTCTCTCAGGGAGCCTCGT < 41bp 0.418098031309976 0.733772144604361 NA NA prediction 0.467544289208722 Functional Gain - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2493172 chr1:2493171 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_23313 0 0 0 0 2 TNFRSF14 chr1:2493112 3'AG 2493112 Downstream 60bp 21514 chr1 2493171 2493171 1 + G T LUSC 2493172 + 2493152 2493192 41 AGCTCCCACTGGGTATGGTGGTTTCTCTCAGGGAGCCTCGT AGCTCCCACTGGGTATGGTTGTTTCTCTCAGGGAGCCTCGT < 41bp 0.418098031309976 0.733772144604361 NA NA prediction 0.467544289208722 Functional Gain - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2493172 chr1:2493171 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_23313 0 0 0 0 2 TNFRSF14 chr1:2493254 5'GT 2493254 Upstream 84bp 21515 chr19 17449437 17449437 1 + G T STAD 17449438 + 17449418 17449458 41 GAACCTGACCGAAGTGGAGGGGCTGGCGGACCTTATCCACG GAACCTGACCGAAGTGGAGTGGCTGGCGGACCTTATCCACG < 41bp 0.381708544783113 0.733770017526899 NA NA prediction 0.467540035053798 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17449438 chr19:17449437 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_23314 0 0 1 0 1 GTPBP3 chr19:17449348 3'AG 17449348 Downstream 90bp 21516 chr17 41570931 41570931 1 + G T SARC 41570932 + 41570912 41570952 41 CAAAGTGCTGTCCTTCACTGGGACCAAGACCAGCCTGAGCA CAAAGTGCTGTCCTTCACTTGGACCAAGACCAGCCTGAGCA < 41bp 0.384009134913858 0.733768289589868 NA NA prediction 0.467536579179736 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41570932 chr17:41570931 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23315 0 0 1 0 1 DHX8 chr17:41570957 5'GT 41570957 Upstream 27bp 21517 chr1 156844391 156844391 1 + G T LUSC 156844392 + 156844372 156844412 41 GCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCT GCACATCTGGAGACCCGGTTGAGAAGAAGGACGAAACACCT < 41bp 0.656146754918541 0.889912112301851 NA NA prediction 0.467530714766621 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156844392 chr1:156844391 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_23316 0 0 0 0 2 NTRK1 chr1:156844363 3'AG 156844363 Downstream 29bp 21518 chr1 156844391 156844391 1 + G T LUSC 156844392 + 156844372 156844412 41 GCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCT GCACATCTGGAGACCCGGTTGAGAAGAAGGACGAAACACCT < 41bp 0.656146754918541 0.889912112301851 NA NA prediction 0.467530714766621 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156844392 chr1:156844391 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_23316 0 0 0 0 2 NTRK1 chr1:156844418 5'GT 156844418 Upstream 28bp 21519 chr1 11595586 11595586 1 + G T UCEC 11595587 + 11595567 11595607 41 TGGAGCGGCTGGGAGATGGGGGCTGTGGAAGCCATCTCCCT TGGAGCGGCTGGGAGATGGTGGCTGTGGAAGCCATCTCCCT < 41bp 0.386488539503491 0.733754169173128 NA NA prediction 0.467508338346256 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11595587 chr1:11595586 nonsynonymous SNV 0.690 5 20 hm7G_associated_SNPs_23318 0 0 0 0 1 DISP3 chr1:11595535 3'AG 11595535 Downstream 52bp 21520 chr17 17997175 17997175 1 + G T STAD 17997176 + 17997156 17997196 41 GCTAAGCTCGCCAAGTATCGGGCCCAGCTCCTGGAACCGTC GCTAAGCTCGCCAAGTATCTGGCCCAGCTCCTGGAACCGTC < 41bp 0.66185999626793 0.895575024721565 NA NA prediction 0.46743005690727 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:17997176 chr17:17997175 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23322 0 0 1 2 1 DRG2 chr17:17997127 3'AG 17997127 Downstream 49bp 21521 chr14 74486224 74486224 1 + G T UCEC 74486225 + 74486205 74486245 41 AAAGAAAGGCAAGAGCAAAGGCAAAGACACGAAGTAAGGAG AAAGAAAGGCAAGAGCAAATGCAAAGACACGAAGTAAGGAG < 41bp 0.63770962295993 0.871421917780489 NA NA prediction 0.467424589641118 Functional Gain - BBOF1 ENSG00000119636 CDS Human protein_coding chr14:74486225 chr14:74486224 nonsynonymous SNV 0.516 2 20 hm7G_associated_SNPs_23323 0 0 0 0 1 BBOF1 chr14:74486237 5'GT 74486237 Upstream 14bp 21522 chr15 69329481 69329481 1 + G T COAD 69329482 + 69329462 69329502 41 TCTTGTTTTTCCTGGAGAAGGCCATCGGACTGGCAGTGTCC TCTTGTTTTTCCTGGAGAATGCCATCGGACTGGCAGTGTCC < 41bp 0.389501250256546 0.733703142210332 NA NA prediction 0.467406284420665 Functional Gain - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69329482 chr15:69329481 nonsynonymous SNV 0.173 5 20 hm7G_associated_SNPs_23325 0 0 0 0 1 NOX5 chr15:69329550 5'GT 69329550 Upstream 70bp 21523 chr4 99273700 99273700 1 + G T UCEC 99273701 + 99273681 99273721 41 TGCTAAATAGCAAAGACCAGGAAGTGCTGCTTCAAACGGGC TGCTAAATAGCAAAGACCATGAAGTGCTGCTTCAAACGGGC < 41bp 0.393397495076849 0.733672908734394 NA NA prediction 0.467345817468787 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99273701 chr4:99273700 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_23327 0 0 0 0 1 RAP1GDS1 chr4:99273752 5'GT 99273752 Upstream 53bp 21524 chr16 77775505 77775505 1 + G T CESC 77775506 + 77775486 77775526 41 CATTGATAACTCCATTTGTGGGTTTAATAGACCACAACTTC CATTGATAACTCCATTTGTTGGTTTAATAGACCACAACTTC < 41bp 0.412127030239883 0.733670341508932 NA NA prediction 0.467340683017863 Functional Gain - NUDT7 ENSG00000140876 CDS Human protein_coding chr16:77775506 chr16:77775505 nonsynonymous SNV 0.096 1 20 hm7G_associated_SNPs_23328 0 0 1 0 1 NUDT7 chr16:77775479 3'AG 77775479 Downstream 27bp 21525 chr12 112926888 112926888 1 + G T COAD 112926889 + 112926869 112926909 41 GTGCGGTCTCAGAGGTCAGGGATGGTCCAGACAGAAGCACA GTGCGGTCTCAGAGGTCAGTGATGGTCCAGACAGAAGCACA < 41bp 0.391109629561087 0.733667966218461 NA NA prediction 0.467335932436922 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926889 chr12:112926888 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_23329 5 0 1 0 2 PTPN11 chr12:112926828 3'AG 112926828 Downstream 61bp 21526 chr12 112926888 112926888 1 + G T COAD 112926889 + 112926869 112926909 41 GTGCGGTCTCAGAGGTCAGGGATGGTCCAGACAGAAGCACA GTGCGGTCTCAGAGGTCAGTGATGGTCCAGACAGAAGCACA < 41bp 0.391109629561087 0.733667966218461 NA NA prediction 0.467335932436922 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112926889 chr12:112926888 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_23329 5 0 1 0 2 PTPN11 chr12:112926979 5'GT 112926979 Upstream 92bp 21527 chr1 6648456 6648456 1 + G T UCEC 6648457 + 6648437 6648477 41 ACGTGGCCAGCCGCCATCAGGAGGGCCGGCCCCACTTCTGC ACGTGGCCAGCCGCCATCATGAGGGCCGGCCCCACTTCTGC < 41bp 0.383711542013076 0.733662276528849 NA NA prediction 0.467324553057697 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6648457 chr1:6648456 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_23330 0 0 0 0 1 ZBTB48 chr1:6648502 5'GT 6648502 Upstream 47bp 21528 chr11 77924787 77924787 1 + G T UCEC 77924788 + 77924768 77924808 41 TTGATGAAGACAAGGATGAGGATGAAGGCTCTCCAGGGGGC TTGATGAAGACAAGGATGATGATGAAGGCTCTCCAGGGGGC < 41bp 0.644497506494547 0.878129550019065 NA NA prediction 0.467264087049038 Functional Gain - USP35 ENSG00000118369 CDS Human protein_coding chr11:77924788 chr11:77924787 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_23334 0 0 0 0 1 USP35 chr11:77924692 3'AG 77924692 Downstream 96bp 21529 chrX 150789414 150789414 1 + G T LUSC 150789415 + 150789395 150789435 41 CTGCCAGGCTGAGATTGTGGGCAAAAAATTATTAAGCCTTC CTGCCAGGCTGAGATTGTGTGCAAAAAATTATTAAGCCTTC < 41bp 0.399120671277782 0.733600452536332 NA NA prediction 0.467200905072664 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150789415 chrX:150789414 nonsynonymous SNV 0.009 3 20 hm7G_associated_SNPs_23338 0 0 0 0 2 PASD1 chrX:150789402 3'AG 150789402 Downstream 13bp 21530 chrX 150789414 150789414 1 + G T LUSC 150789415 + 150789395 150789435 41 CTGCCAGGCTGAGATTGTGGGCAAAAAATTATTAAGCCTTC CTGCCAGGCTGAGATTGTGTGCAAAAAATTATTAAGCCTTC < 41bp 0.399120671277782 0.733600452536332 NA NA prediction 0.467200905072664 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150789415 chrX:150789414 nonsynonymous SNV 0.009 3 20 hm7G_associated_SNPs_23338 0 0 0 0 2 PASD1 chrX:150789501 5'GT 150789501 Upstream 88bp 21531 chr2 239237413 239237413 1 + G T UCEC 239237414 + 239237394 239237434 41 CACTGACCTCAAGATCTCAGGAATTGGATAATAAGAATGTG CACTGACCTCAAGATCTCATGAATTGGATAATAAGAATGTG < 41bp 0.397942865668868 0.733592311862562 NA NA prediction 0.467184623725124 Functional Gain - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239237414 chr2:239237413 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_23339 0 0 1 0 2 TRAF3IP1 chr2:239237327 3'AG 239237327 Downstream 87bp 21532 chr2 239237413 239237413 1 + G T UCEC 239237414 + 239237394 239237434 41 CACTGACCTCAAGATCTCAGGAATTGGATAATAAGAATGTG CACTGACCTCAAGATCTCATGAATTGGATAATAAGAATGTG < 41bp 0.397942865668868 0.733592311862562 NA NA prediction 0.467184623725124 Functional Gain - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239237414 chr2:239237413 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_23339 0 0 1 0 2 TRAF3IP1 chr2:239237470 5'GT 239237470 Upstream 58bp 21533 chr5 150042515 150042515 1 + G T UCEC 150042516 + 150042496 150042536 41 TCCACAGGATGATCCCCAAGGAGCAGAAGGGGCCAGTGATG TCCACAGGATGATCCCCAATGAGCAGAAGGGGCCAGTGATG < 41bp 0.6533137493378 0.886900391453405 NA NA prediction 0.467173284231211 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150042516 chr5:150042515 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_23340 0 0 0 0 2 MYOZ3 chr5:150042503 3'AG 150042503 Downstream 13bp 21534 chr5 150042515 150042515 1 + G T UCEC 150042516 + 150042496 150042536 41 TCCACAGGATGATCCCCAAGGAGCAGAAGGGGCCAGTGATG TCCACAGGATGATCCCCAATGAGCAGAAGGGGCCAGTGATG < 41bp 0.6533137493378 0.886900391453405 NA NA prediction 0.467173284231211 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150042516 chr5:150042515 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_23340 0 0 0 0 2 MYOZ3 chr5:150042564 5'GT 150042564 Upstream 50bp 21535 chr3 46401226 46401226 1 + G T LUSC 46401227 + 46401207 46401247 41 CCAAAAACCAGTGTGTGGAGGTCCAGGAGTGAGACCAGGAA CCAAAAACCAGTGTGTGGATGTCCAGGAGTGAGACCAGGAA < 41bp 0.620394139531556 0.853949334495499 NA NA prediction 0.467110389927887 Functional Gain - CCR2 ENSG00000121807 CDS Human protein_coding chr3:46401227 chr3:46401226 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_23342 0 0 0 0 1 CCR2 chr3:46401168 3'AG 46401168 Downstream 59bp 21536 chr1 151495941 151495941 1 + G T LUSC 151495942 + 151495922 151495962 41 CTAGAGCCATCCCAAGTTGGGCTGGAGCGGCAGCTGGAGGA CTAGAGCCATCCCAAGTTGTGCTGGAGCGGCAGCTGGAGGA < 41bp 0.657923888201893 0.891455642137678 NA NA prediction 0.467063507871569 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151495942 chr1:151495941 nonsynonymous SNV 0.945 1 20 hm7G_associated_SNPs_23344 0 0 0 0 2 CGN chr1:151495910 3'AG 151495910 Downstream 32bp 21537 chr1 151495941 151495941 1 + G T LUSC 151495942 + 151495922 151495962 41 CTAGAGCCATCCCAAGTTGGGCTGGAGCGGCAGCTGGAGGA CTAGAGCCATCCCAAGTTGTGCTGGAGCGGCAGCTGGAGGA < 41bp 0.657923888201893 0.891455642137678 NA NA prediction 0.467063507871569 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151495942 chr1:151495941 nonsynonymous SNV 0.945 1 20 hm7G_associated_SNPs_23344 0 0 0 0 2 CGN chr1:151496037 5'GT 151496037 Upstream 97bp 21538 chr13 47315858 47315858 1 + G T THCA 47315859 + 47315839 47315879 41 TGACACTCTGCTGGCACTCGGGGAGAAAGCCCCACCACCAA TGACACTCTGCTGGCACTCTGGGAGAAAGCCCCACCACCAA < 41bp 0.419359296646635 0.733498355436788 NA NA prediction 0.466996710873576 Functional Gain - LRCH1 ENSG00000136141 CDS Human protein_coding chr13:47315859 chr13:47315858 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23346 0 0 1 0 1 LRCH1 chr13:47315777 3'AG 47315777 Downstream 82bp 21539 chr7 99630968 99630968 1 + G T UCEC 99630969 + 99630949 99630989 41 ACGAGGAGTCAACCTCAAAGGCTGAAACCTCGGAAGATTCA ACGAGGAGTCAACCTCAAATGCTGAAACCTCGGAAGATTCA < 41bp 0.412863022771838 0.733487783423074 NA NA prediction 0.466975566846147 Functional Gain - ZKSCAN1 ENSG00000106261 CDS Human protein_coding chr7:99630969 chr7:99630968 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_23347 0 0 1 0 1 ZKSCAN1 chr7:99630928 3'AG 99630928 Downstream 41bp 21540 chr1 79121080 79121080 1 + G T LUAD 79121081 + 79121061 79121101 41 TATTAGAGACGGGAAAGATGGCAAATACCTGCCGTTTATTC TATTAGAGACGGGAAAGATTGCAAATACCTGCCGTTTATTC < 41bp 0.649154845853878 0.882632696584562 NA NA prediction 0.466955701461367 Functional Gain - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79121081 chr1:79121080 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_23349 0 0 0 0 1 IFI44 chr1:79121047 3'AG 79121047 Downstream 34bp 21541 chr1 45267598 45267598 1 + G T UCEC 45267599 + 45267579 45267619 41 TTGGAGCCTCCGGAGCAGAGGAAGAAGTGAGTTTTGAGGAA TTGGAGCCTCCGGAGCAGATGAAGAAGTGAGTTTTGAGGAA < 41bp 0.649461837123973 0.882926395506003 NA NA prediction 0.466929116764059 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267599 chr1:45267598 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_23353 0 0 1 2 2 PLK3 chr1:45267517 3'AG 45267517 Downstream 82bp 21542 chr1 45267598 45267598 1 + G T UCEC 45267599 + 45267579 45267619 41 TTGGAGCCTCCGGAGCAGAGGAAGAAGTGAGTTTTGAGGAA TTGGAGCCTCCGGAGCAGATGAAGAAGTGAGTTTTGAGGAA < 41bp 0.649461837123973 0.882926395506003 NA NA prediction 0.466929116764059 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267599 chr1:45267598 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_23353 0 0 1 2 2 PLK3 chr1:45267604 5'GT 45267604 Upstream 7bp 21543 chr12 117462058 117462058 1 + G T UCEC 117462059 + 117462039 117462079 41 CTGGAAGATCGTCAGTGGAGGCGAGGAAGGCCTGGTGTCCG CTGGAAGATCGTCAGTGGATGCGAGGAAGGCCTGGTGTCCG < 41bp 0.65440120694911 0.887865564356611 NA NA prediction 0.466928714815003 Functional Gain - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117462059 chr12:117462058 nonsynonymous SNV 0.898 4 20 hm7G_associated_SNPs_23354 0 0 1 0 1 FBXW8 chr12:117462125 5'GT 117462125 Upstream 68bp 21544 chr17 57474540 57474540 1 + G T UCEC 57474541 + 57474521 57474561 41 ACACATGATCAAGGACAATGGCTGGGACTGATTGGACAGCA ACACATGATCAAGGACAATTGCTGGGACTGATTGGACAGCA < 41bp 0.629839157356101 0.863286024482776 NA NA prediction 0.466893734253349 Functional Gain - YPEL2 ENSG00000175155 CDS Human protein_coding chr17:57474541 chr17:57474540 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23355 0 0 1 0 1 YPEL2 chr17:57474462 3'AG 57474462 Downstream 79bp 21545 chr11 65048481 65048481 1 + G T LUAD 65048482 + 65048462 65048502 41 GGAGCCTGTCACTCTGCTGGGCCAGATTGGCTGTGATAGCA GGAGCCTGTCACTCTGCTGTGCCAGATTGGCTGTGATAGCA < 41bp 0.383235773045863 0.733430827698007 NA NA prediction 0.466861655396014 Functional Gain - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65048482 chr11:65048481 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23357 0 0 1 0 1 POLA2 chr11:65048463 3'AG 65048463 Downstream 19bp 21546 chr10 13639505 13639505 1 + G T UCEC 13639506 + 13639486 13639526 41 AGCTCGCCAAAAAAGAAGAGGAAGCATATTTTGAAAGATGT AGCTCGCCAAAAAAGAAGATGAAGCATATTTTGAAAGATGT < 41bp 0.4108214191078 0.733411054203326 NA NA prediction 0.466822108406652 Functional Gain - PRPF18 ENSG00000165630 CDS Human protein_coding chr10:13639506 chr10:13639505 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23358 0 0 1 0 2 PRPF18 chr10:13639458 3'AG 13639458 Downstream 48bp 21547 chr10 13639505 13639505 1 + G T UCEC 13639506 + 13639486 13639526 41 AGCTCGCCAAAAAAGAAGAGGAAGCATATTTTGAAAGATGT AGCTCGCCAAAAAAGAAGATGAAGCATATTTTGAAAGATGT < 41bp 0.4108214191078 0.733411054203326 NA NA prediction 0.466822108406652 Functional Gain - PRPF18 ENSG00000165630 CDS Human protein_coding chr10:13639506 chr10:13639505 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23358 0 0 1 0 2 PRPF18 chr10:13639535 5'GT 13639535 Upstream 31bp 21548 chr11 69458698 69458698 1 + G T LUAD 69458699 + 69458679 69458719 41 TCTCCAAAATGCCAGAGGCGGAGGAGAACAAACAGATCATC TCTCCAAAATGCCAGAGGCTGAGGAGAACAAACAGATCATC < 41bp 0.644474748330509 0.877883368786851 NA NA prediction 0.466817240912684 Functional Gain - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69458699 chr11:69458698 synonymous SNV . 0 20 hm7G_associated_SNPs_23359 0 0 1 0 2 CCND1 chr11:69458600 3'AG 69458600 Downstream 99bp 21549 chr11 69458698 69458698 1 + G T LUAD 69458699 + 69458679 69458719 41 TCTCCAAAATGCCAGAGGCGGAGGAGAACAAACAGATCATC TCTCCAAAATGCCAGAGGCTGAGGAGAACAAACAGATCATC < 41bp 0.644474748330509 0.877883368786851 NA NA prediction 0.466817240912684 Functional Gain - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69458699 chr11:69458698 synonymous SNV . 0 20 hm7G_associated_SNPs_23359 0 0 1 0 2 CCND1 chr11:69458759 5'GT 69458759 Upstream 62bp 21550 chr8 120431548 120431548 1 + G T LUAD 120431549 + 120431529 120431569 41 ACTCGGCTCTGCATGGTGCGGCCCTGTGAACAAGAGCCAGA ACTCGGCTCTGCATGGTGCTGCCCTGTGAACAAGAGCCAGA < 41bp 0.65447890667679 0.887874667785167 NA NA prediction 0.466791522216754 Functional Gain - NOV ENSG00000136999 CDS Human protein_coding chr8:120431549 chr8:120431548 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_23361 0 0 0 0 1 NOV chr8:120431585 5'GT 120431585 Upstream 38bp 21551 chr4 8584319 8584319 1 + G T COAD 8584320 + 8584300 8584340 41 CCGCGCCACCAGGAAGATTGGCATTGCTATTGCGACCTTCC CCGCGCCACCAGGAAGATTTGCATTGCTATTGCGACCTTCC < 41bp 0.666404553593092 0.899796480719399 NA NA prediction 0.466783854252613 Functional Gain - GPR78 ENSG00000155269 CDS Human protein_coding chr4:8584320 chr4:8584319 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_23362 0 0 0 0 1 GPR78 chr4:8584371 5'GT 8584371 Upstream 53bp 21552 chr14 74531621 74531621 1 - C A KIRC 74531620 - 74531600 74531640 41 GATTTGTTCTGTTTTAGGTGGGAGTGAATGTCCCCATTCCA GATTTGTTCTGTTTTAGGTTGGAGTGAATGTCCCCATTCCA < 41bp 0.652962500721654 0.886313087928527 NA NA prediction 0.466701174413745 Functional Gain - ALDH6A1 ENSG00000119711 CDS Human protein_coding chr14:74531620 chr14:74531621 synonymous SNV . 0 20 hm7G_associated_SNPs_23365 0 0 0 0 2 ALDH6A1 chr14:74531525 5'GT 74531525 Upstream 97bp 21553 chr14 74531621 74531621 1 - C A KIRC 74531620 - 74531600 74531640 41 GATTTGTTCTGTTTTAGGTGGGAGTGAATGTCCCCATTCCA GATTTGTTCTGTTTTAGGTTGGAGTGAATGTCCCCATTCCA < 41bp 0.652962500721654 0.886313087928527 NA NA prediction 0.466701174413745 Functional Gain - ALDH6A1 ENSG00000119711 CDS Human protein_coding chr14:74531620 chr14:74531621 synonymous SNV . 0 20 hm7G_associated_SNPs_23365 0 0 0 0 2 ALDH6A1 chr14:74531623 3'AG 74531623 Downstream 3bp 21554 chr12 9997030 9997030 1 + G T LUAD 9997031 + 9997011 9997051 41 CCCTAGATTCTTCATAAAGGGACCAGCTAAAGAAAACAGCT CCCTAGATTCTTCATAAAGTGACCAGCTAAAGAAAACAGCT < 41bp 0.604642317437656 0.837988116301008 NA NA prediction 0.466691597726705 Functional Gain - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9997031 chr12:9997030 stopgain 0.880 0 20 hm7G_associated_SNPs_23366 0 0 0 5 1 KLRF1 chr12:9997017 3'AG 9997017 Downstream 14bp 21555 chr9 103278966 103278966 1 + G T LUSC 103278967 + 103278947 103278987 41 TTTTAAACAGAAGAGGAAGGGTCAGGGGCAGAAGTTCACAG TTTTAAACAGAAGAGGAAGTGTCAGGGGCAGAAGTTCACAG < 41bp 0.632567408148323 0.865904049664867 NA NA prediction 0.466673283033088 Functional Gain - MSANTD3-TMEFF1;TMEFF1 ENSG00000241697;ENSG00000251349 CDS Human other chr9:103278967 chr9:103278966 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23367 0 0 1 0 2 MSANTD3-TMEFF1;TMEFF1 chr9:103278957 3'AG 103278957 Downstream 10bp 21556 chr9 103278966 103278966 1 + G T LUSC 103278967 + 103278947 103278987 41 TTTTAAACAGAAGAGGAAGGGTCAGGGGCAGAAGTTCACAG TTTTAAACAGAAGAGGAAGTGTCAGGGGCAGAAGTTCACAG < 41bp 0.632567408148323 0.865904049664867 NA NA prediction 0.466673283033088 Functional Gain - MSANTD3-TMEFF1;TMEFF1 ENSG00000241697;ENSG00000251349 CDS Human other chr9:103278967 chr9:103278966 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23367 0 0 1 0 2 MSANTD3-TMEFF1;TMEFF1 chr9:103279053 5'GT 103279053 Upstream 88bp 21557 chr2 79255038 79255038 1 + G T LUAD 79255039 + 79255019 79255059 41 CTTAAACCCTGGCCACTGTGGGAGCCTGTCAAGAAGCACAG CTTAAACCCTGGCCACTGTTGGAGCCTGTCAAGAAGCACAG < 41bp 0.656606860296794 0.889909314895427 NA NA prediction 0.466604909197267 Functional Gain - REG3G ENSG00000143954 CDS Human protein_coding chr2:79255039 chr2:79255038 nonsynonymous SNV 0.056 3 20 hm7G_associated_SNPs_23368 0 0 0 0 1 REG3G chr2:79255059 5'GT 79255059 Upstream 22bp 21558 chr7 27797719 27797719 1 + G T UCEC 27797720 + 27797700 27797740 41 GCCTGAACATTATGTGGAAGGATCAACAGTCAATTGTGTAC GCCTGAACATTATGTGGAATGATCAACAGTCAATTGTGTAC < 41bp 0.40429310636938 0.733296824679625 NA NA prediction 0.46659364935925 Functional Gain - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27797720 chr7:27797719 stopgain 1.000 1 20 hm7G_associated_SNPs_23369 0 0 1 0 2 TAX1BP1 chr7:27797650 3'AG 27797650 Downstream 70bp 21559 chr7 27797719 27797719 1 + G T UCEC 27797720 + 27797700 27797740 41 GCCTGAACATTATGTGGAAGGATCAACAGTCAATTGTGTAC GCCTGAACATTATGTGGAATGATCAACAGTCAATTGTGTAC < 41bp 0.40429310636938 0.733296824679625 NA NA prediction 0.46659364935925 Functional Gain - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27797720 chr7:27797719 stopgain 1.000 1 20 hm7G_associated_SNPs_23369 0 0 1 0 2 TAX1BP1 chr7:27797752 5'GT 27797752 Upstream 34bp 21560 chr15 80866507 80866507 1 + G T STAD 80866508 + 80866488 80866528 41 GGCAACTTCAGCAACAGCAGGCAGAATTGGAAGTGCACCAG GGCAACTTCAGCAACAGCATGCAGAATTGGAAGTGCACCAG < 41bp 0.662374091299476 0.89566816313169 NA NA prediction 0.466588143664429 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80866508 chr15:80866507 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_23370 0 0 0 0 2 ARNT2 chr15:80866489 3'AG 80866489 Downstream 19bp 21561 chr15 80866507 80866507 1 + G T STAD 80866508 + 80866488 80866528 41 GGCAACTTCAGCAACAGCAGGCAGAATTGGAAGTGCACCAG GGCAACTTCAGCAACAGCATGCAGAATTGGAAGTGCACCAG < 41bp 0.662374091299476 0.89566816313169 NA NA prediction 0.466588143664429 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80866508 chr15:80866507 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_23370 0 0 0 0 2 ARNT2 chr15:80866561 5'GT 80866561 Upstream 55bp 21562 chr11 93862607 93862607 1 + G T LUAD 93862608 + 93862588 93862628 41 TGGTCACGTGCATTGCGGTGGGGCTGCCCCTGCTGCTCATC TGGTCACGTGCATTGCGGTTGGGCTGCCCCTGCTGCTCATC < 41bp 0.398143983061383 0.733280881381791 NA NA prediction 0.466561762763583 Functional Gain - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93862608 chr11:93862607 synonymous SNV . 0 20 hm7G_associated_SNPs_23372 0 0 1 0 1 PANX1 chr11:93862659 5'GT 93862659 Upstream 53bp 21563 chr12 129431890 129431890 1 + G T LUSC 129431891 + 129431871 129431911 41 TTTGTGTTTCAGAGCCGCTGGGGTACGATTGATTGGAGAGA TTTGTGTTTCAGAGCCGCTTGGGTACGATTGATTGGAGAGA < 41bp 0.654575184107768 0.887835632270165 NA NA prediction 0.466520896324795 Functional Gain - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129431891 chr12:129431890 nonsynonymous SNV 0.065 4 20 hm7G_associated_SNPs_23373 0 0 0 2 1 GLT1D1 chr12:129431883 3'AG 129431883 Downstream 8bp 21564 chr16 22137567 22137567 1 + G T LUSC 22137568 + 22137548 22137588 41 CATATCCAGCACTCCCTGCGGCTGCTGCTGGAGGAGCAGTT CATATCCAGCACTCCCTGCTGCTGCTGCTGGAGGAGCAGTT < 41bp 0.658199790317379 0.89144227280696 NA NA prediction 0.466484964979162 Functional Gain - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22137568 chr16:22137567 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_23375 0 0 0 0 1 VWA3A chr16:22137618 5'GT 22137618 Upstream 52bp 21565 chr2 231090571 231090571 1 + G T LUAD 231090572 + 231090552 231090592 41 CCAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAGATGGCA CCAAGCTCATGGCCCAGCATGGCCAGCAGGGGCAGATGGCA < 41bp 0.411577322253954 0.733220298804227 NA NA prediction 0.466440597608454 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231090572 chr2:231090571 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_23377 0 0 0 0 1 SP140 chr2:231090618 5'GT 231090618 Upstream 48bp 21566 chr22 35785924 35785924 1 + G T UCEC 35785925 + 35785905 35785945 41 AGCCCCTCACGGGCACCAGGGCTTCGCCAGCGGGCCAGCAA AGCCCCTCACGGGCACCAGTGCTTCGCCAGCGGGCCAGCAA < 41bp 0.664216871558231 0.897434137217884 NA NA prediction 0.466434531319305 Functional Gain - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35785925 chr22:35785924 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23379 0 0 1 0 2 HMOX1 chr22:35785857 3'AG 35785857 Downstream 68bp 21567 chr22 35785924 35785924 1 + G T UCEC 35785925 + 35785905 35785945 41 AGCCCCTCACGGGCACCAGGGCTTCGCCAGCGGGCCAGCAA AGCCCCTCACGGGCACCAGTGCTTCGCCAGCGGGCCAGCAA < 41bp 0.664216871558231 0.897434137217884 NA NA prediction 0.466434531319305 Functional Gain - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35785925 chr22:35785924 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23379 0 0 1 0 2 HMOX1 chr22:35785956 5'GT 35785956 Upstream 33bp 21568 chr3 44943063 44943063 1 + G T LUAD 44943064 + 44943044 44943084 41 TCATTGGGAATTGGACTGGGGACTACGAAGGTGGCACAGCC TCATTGGGAATTGGACTGGTGACTACGAAGGTGGCACAGCC < 41bp 0.657874155711735 0.891080326532598 NA NA prediction 0.466412341641727 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44943064 chr3:44943063 synonymous SNV . 0 20 hm7G_associated_SNPs_23380 0 0 0 0 1 TGM4 chr3:44943016 3'AG 44943016 Downstream 48bp 21569 chr19 7511968 7511968 1 + G T LIHC 7511969 + 7511949 7511989 41 GAGAATGAAAGAAAAGTACGGTGTGTTTTGTAGTGGCCACA GAGAATGAAAGAAAAGTACTGTGTGTTTTGTAGTGGCCACA < 41bp 0.389715707300361 0.733202355286678 NA NA prediction 0.466404710573355 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7511969 chr19:7511968 nonsynonymous SNV 0.792 3 20 hm7G_associated_SNPs_23381 0 0 1 0 1 ARHGEF18 chr19:7512054 5'GT 7512054 Upstream 87bp 21570 chr14 24113686 24113686 1 + G T STAD 24113687 + 24113667 24113707 41 GAACACTGGCATTGGAGCTGGCCCCCAAGGACATCCGGGTA GAACACTGGCATTGGAGCTTGCCCCCAAGGACATCCGGGTA < 41bp 0.658986006323237 0.89217525237289 NA NA prediction 0.466378492099306 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113687 chr14:24113686 synonymous SNV . 0 20 hm7G_associated_SNPs_23382 0 0 1 0 3 DHRS2 chr14:24113618 3'AG 24113618 Downstream 69bp 21571 chr14 24113686 24113686 1 + G T STAD 24113687 + 24113667 24113707 41 GAACACTGGCATTGGAGCTGGCCCCCAAGGACATCCGGGTA GAACACTGGCATTGGAGCTTGCCCCCAAGGACATCCGGGTA < 41bp 0.658986006323237 0.89217525237289 NA NA prediction 0.466378492099306 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113687 chr14:24113686 synonymous SNV . 0 20 hm7G_associated_SNPs_23382 0 0 1 0 3 DHRS2 chr14:24113752 5'GT 24113752 Upstream 67bp 21572 chr14 24113686 24113686 1 + G T STAD 24113687 + 24113667 24113707 41 GAACACTGGCATTGGAGCTGGCCCCCAAGGACATCCGGGTA GAACACTGGCATTGGAGCTTGCCCCCAAGGACATCCGGGTA < 41bp 0.658986006323237 0.89217525237289 NA NA prediction 0.466378492099306 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24113687 chr14:24113686 synonymous SNV . 0 20 hm7G_associated_SNPs_23382 0 0 1 0 3 DHRS2 chr14:24113763 5'GT 24113763 Upstream 78bp 21573 chr17 7909696 7909696 1 + G A COAD 7909697 + 7909677 7909717 41 CCAGGTCTCCCCACTCTTTGGCACCATCTATGACGCGGTCT CCAGGTCTCCCCACTCTTTAGCACCATCTATGACGCGGTCT < 41bp 0.506665741267686 0.739851614186002 NA NA prediction 0.466371745836631 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7909697 chr17:7909696 nonsynonymous SNV 0.835 4 20 hm7G_associated_SNPs_23383 0 0 0 0 1 GUCY2D chr17:7909681 3'AG 7909681 Downstream 16bp 21574 chr2 209358000 209358000 1 + G T LUAD 209358001 + 209357981 209358021 41 TGGCTTAGGTTCAGGCAGAGGTGAAGAAGATGTGGAGTCGG TGGCTTAGGTTCAGGCAGATGTGAAGAAGATGTGGAGTCGG < 41bp 0.437242214495208 0.733173226740032 NA NA prediction 0.466346453480064 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209358001 chr2:209358000 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23384 0 0 1 0 1 PTH2R chr2:209357989 3'AG 209357989 Downstream 12bp 21575 chr15 90622912 90622912 1 + G T UCEC 90622913 + 90622893 90622933 41 CCCCATGATGGAGCTGACAGGCACTGACCCTTCAGAGCTCG CCCCATGATGGAGCTGACATGCACTGACCCTTCAGAGCTCG < 41bp 0.407333928332706 0.733165115127131 NA NA prediction 0.466330230254261 Functional Gain - ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90622913 chr15:90622912 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_23385 0 0 1 0 1 ZNF710 chr15:90622892 3'AG 90622892 Downstream 21bp 21576 chr10 76935840 76935840 1 + G T LUSC 76935841 + 76935821 76935861 41 TAGATATATGGCAGTGTATGGGAGAAATTACATCGAGCCTT TAGATATATGGCAGTGTATTGGAGAAATTACATCGAGCCTT < 41bp 0.629723796433904 0.862886249258042 NA NA prediction 0.466324905648277 Functional Gain - SAMD8 ENSG00000156671 CDS Human protein_coding chr10:76935841 chr10:76935840 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23386 0 0 1 0 1 SAMD8 chr10:76935824 3'AG 76935824 Downstream 17bp 21577 chr4 111470770 111470770 1 + G T LUAD 111470771 + 111470751 111470791 41 TCCTCGTTATTTGAGCAGTGGCTAAATGGGACTGTAAGGTG TCCTCGTTATTTGAGCAGTTGCTAAATGGGACTGTAAGGTG < 41bp 0.643097935735672 0.87624580679948 NA NA prediction 0.466295742127615 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111470771 chr4:111470770 nonsynonymous SNV 0.019 4 20 hm7G_associated_SNPs_23388 0 0 0 0 2 ENPEP chr4:111470684 3'AG 111470684 Downstream 87bp 21578 chr4 111470770 111470770 1 + G T LUAD 111470771 + 111470751 111470791 41 TCCTCGTTATTTGAGCAGTGGCTAAATGGGACTGTAAGGTG TCCTCGTTATTTGAGCAGTTGCTAAATGGGACTGTAAGGTG < 41bp 0.643097935735672 0.87624580679948 NA NA prediction 0.466295742127615 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111470771 chr4:111470770 nonsynonymous SNV 0.019 4 20 hm7G_associated_SNPs_23388 0 0 0 0 2 ENPEP chr4:111470788 5'GT 111470788 Upstream 19bp 21579 chr6 39832277 39832277 1 + G T READ 39832278 + 39832258 39832298 41 TCGACCGCATCAATTCCATGGCTGCGGTGAGTGGCTGCCCC TCGACCGCATCAATTCCATTGCTGCGGTGAGTGGCTGCCCC < 41bp 0.374713620076211 0.733137342565793 NA NA prediction 0.466274685131587 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39832278 chr6:39832277 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_23391 0 0 0 0 2 DAAM2 chr6:39832209 3'AG 39832209 Downstream 69bp 21580 chr6 39832277 39832277 1 + G T READ 39832278 + 39832258 39832298 41 TCGACCGCATCAATTCCATGGCTGCGGTGAGTGGCTGCCCC TCGACCGCATCAATTCCATTGCTGCGGTGAGTGGCTGCCCC < 41bp 0.374713620076211 0.733137342565793 NA NA prediction 0.466274685131587 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39832278 chr6:39832277 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_23391 0 0 0 0 2 DAAM2 chr6:39832283 5'GT 39832283 Upstream 7bp 21581 chr19 41292619 41292619 1 + G T COAD 41292620 + 41292600 41292640 41 CAGGCGAGAACGTGGAGGAGGCGTTCCTCAAGTGTGCCCGC CAGGCGAGAACGTGGAGGATGCGTTCCTCAAGTGTGCCCGC < 41bp 0.622282386542782 0.855355272016986 NA NA prediction 0.466145770948408 Functional Gain - RAB4B ENSG00000167578;ENSG00000171570 CDS Human other chr19:41292620 chr19:41292619 nonsynonymous SNV 0.967 2 20 hm7G_associated_SNPs_23395 0 0 1 0 2 RAB4B chr19:41292570 3'AG 41292570 Downstream 50bp 21582 chr19 41292619 41292619 1 + G T COAD 41292620 + 41292600 41292640 41 CAGGCGAGAACGTGGAGGAGGCGTTCCTCAAGTGTGCCCGC CAGGCGAGAACGTGGAGGATGCGTTCCTCAAGTGTGCCCGC < 41bp 0.622282386542782 0.855355272016986 NA NA prediction 0.466145770948408 Functional Gain - RAB4B ENSG00000167578;ENSG00000171570 CDS Human other chr19:41292620 chr19:41292619 nonsynonymous SNV 0.967 2 20 hm7G_associated_SNPs_23395 0 0 1 0 2 RAB4B chr19:41292665 5'GT 41292665 Upstream 47bp 21583 chr12 56733288 56733288 1 + G T UCEC 56733289 + 56733269 56733309 41 AGATGGCTGTGACCCCCAAGGACTCAGGGACAACAGTCAGG AGATGGCTGTGACCCCCAATGACTCAGGGACAACAGTCAGG < 41bp 0.657883215155407 0.89095299431299 NA NA prediction 0.466139558315167 Functional Gain - IL23A ENSG00000110944 CDS Human protein_coding chr12:56733289 chr12:56733288 stopgain 1.000 1 20 hm7G_associated_SNPs_23396 0 0 1 0 2 IL23A chr12:56733210 3'AG 56733210 Downstream 79bp 21584 chr12 56733288 56733288 1 + G T UCEC 56733289 + 56733269 56733309 41 AGATGGCTGTGACCCCCAAGGACTCAGGGACAACAGTCAGG AGATGGCTGTGACCCCCAATGACTCAGGGACAACAGTCAGG < 41bp 0.657883215155407 0.89095299431299 NA NA prediction 0.466139558315167 Functional Gain - IL23A ENSG00000110944 CDS Human protein_coding chr12:56733289 chr12:56733288 stopgain 1.000 1 20 hm7G_associated_SNPs_23396 0 0 1 0 2 IL23A chr12:56733308 5'GT 56733308 Upstream 21bp 21585 chr2 27320408 27320408 1 + G T SKCM 27320409 + 27320389 27320429 41 CAGGTGAAGATGCTGCAGCGGATAGACGCACACAACACCAG CAGGTGAAGATGCTGCAGCTGATAGACGCACACAACACCAG < 41bp 0.661132363758544 0.894201438224752 NA NA prediction 0.466138148932415 Functional Gain - KHK ENSG00000138030 CDS Human protein_coding chr2:27320409 chr2:27320408 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_23397 0 0 1 0 1 KHK chr2:27320371 3'AG 27320371 Downstream 38bp 21586 chr15 40939192 40939192 1 + G T UCEC 40939193 + 40939173 40939213 41 TTTTGTATTTAGAATGAGAGGGAGAAACTTCAAATAAAGAT TTTTGTATTTAGAATGAGATGGAGAAACTTCAAATAAAGAT < 41bp 0.431091871375002 0.733065632203253 NA NA prediction 0.466131264406507 Functional Gain - KNL1 ENSG00000137812 CDS Human protein_coding chr15:40939193 chr15:40939192 nonsynonymous SNV 0.924 2 20 hm7G_associated_SNPs_23398 0 0 1 0 2 KNL1 chr15:40939185 3'AG 40939185 Downstream 8bp 21587 chr15 40939192 40939192 1 + G T UCEC 40939193 + 40939173 40939213 41 TTTTGTATTTAGAATGAGAGGGAGAAACTTCAAATAAAGAT TTTTGTATTTAGAATGAGATGGAGAAACTTCAAATAAAGAT < 41bp 0.431091871375002 0.733065632203253 NA NA prediction 0.466131264406507 Functional Gain - KNL1 ENSG00000137812 CDS Human protein_coding chr15:40939193 chr15:40939192 nonsynonymous SNV 0.924 2 20 hm7G_associated_SNPs_23398 0 0 1 0 2 KNL1 chr15:40939272 5'GT 40939272 Upstream 81bp 21588 chr1 151542215 151542215 1 + G T BLCA 151542216 + 151542196 151542236 41 AAGCTTCAGGAGGCCAAGCGGCAACACCAGTCAGACTGTGT AAGCTTCAGGAGGCCAAGCTGCAACACCAGTCAGACTGTGT < 41bp 0.662942086825102 0.89600189394718 NA NA prediction 0.466119614244155 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151542216 chr1:151542215 nonsynonymous SNV 0.754 2 20 hm7G_associated_SNPs_23400 0 0 1 0 2 TUFT1 chr1:151542133 3'AG 151542133 Downstream 83bp 21589 chr1 151542215 151542215 1 + G T BLCA 151542216 + 151542196 151542236 41 AAGCTTCAGGAGGCCAAGCGGCAACACCAGTCAGACTGTGT AAGCTTCAGGAGGCCAAGCTGCAACACCAGTCAGACTGTGT < 41bp 0.662942086825102 0.89600189394718 NA NA prediction 0.466119614244155 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151542216 chr1:151542215 nonsynonymous SNV 0.754 2 20 hm7G_associated_SNPs_23400 0 0 1 0 2 TUFT1 chr1:151542246 5'GT 151542246 Upstream 32bp 21590 chr19 49619616 49619616 1 + G T STAD 49619617 + 49619597 49619637 41 CCTAGGCTTCAACATCATGGGTGGCAAAGAGCAAAACTCGC CCTAGGCTTCAACATCATGTGTGGCAAAGAGCAAAACTCGC < 41bp 0.654188012472643 0.887239830182011 NA NA prediction 0.466103635418737 Functional Gain - LIN7B ENSG00000104863 CDS Human protein_coding chr19:49619617 chr19:49619616 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23401 0 0 0 0 1 LIN7B chr19:49619520 3'AG 49619520 Downstream 97bp 21591 chr16 50759449 50759449 1 + G T UCEC 50759450 + 50759430 50759470 41 TGTATGTTCTCTCGCAGAAGGACTGAAGAAAAATTCAAGTT TGTATGTTCTCTCGCAGAATGACTGAAGAAAAATTCAAGTT < 41bp 0.641138253332357 0.874165168124321 NA NA prediction 0.466053829583928 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50759450 chr16:50759449 stopgain 0.893 1 20 hm7G_associated_SNPs_23404 0 0 0 0 2 NOD2 chr16:50759400 3'AG 50759400 Downstream 50bp 21592 chr16 50759449 50759449 1 + G T UCEC 50759450 + 50759430 50759470 41 TGTATGTTCTCTCGCAGAAGGACTGAAGAAAAATTCAAGTT TGTATGTTCTCTCGCAGAATGACTGAAGAAAAATTCAAGTT < 41bp 0.641138253332357 0.874165168124321 NA NA prediction 0.466053829583928 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50759450 chr16:50759449 stopgain 0.893 1 20 hm7G_associated_SNPs_23404 0 0 0 0 2 NOD2 chr16:50759483 5'GT 50759483 Upstream 35bp 21593 chrX 49161367 49161367 1 + G T THCA 49161368 + 49161348 49161388 41 CGAGGAAGATCGACCTATCGGTCTAGACCAAGACTCTATGT CGAGGAAGATCGACCTATCTGTCTAGACCAAGACTCTATGT < 41bp 0.410442366305039 0.733021664610718 NA NA prediction 0.466043329221436 Functional Gain - GAGE10 ENSG00000215274 CDS Human protein_coding chrX:49161368 chrX:49161367 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_23405 0 0 0 0 1 GAGE10 chrX:49161419 5'GT 49161419 Upstream 53bp 21594 chr17 72340424 72340424 1 + G T CHOL 72340425 + 72340405 72340445 41 GCTACCTGGAGCTGCGGGAGGACTCTAAGGGGGTGATCCAG GCTACCTGGAGCTGCGGGATGACTCTAAGGGGGTGATCCAG < 41bp 0.66276431788759 0.895758857151716 NA NA prediction 0.465989078528251 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72340425 chr17:72340424 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_23408 0 0 0 0 1 KIF19 chr17:72340362 3'AG 72340362 Downstream 63bp 21595 chr12 122690928 122690928 1 + G T UCEC 122690929 + 122690909 122690949 41 CTTGGCTGTGCTGTTGCTCGGCTGCCTGCTCTTCCTGAGGA CTTGGCTGTGCTGTTGCTCTGCTGCCTGCTCTTCCTGAGGA < 41bp 0.405768527465455 0.732968702979412 NA NA prediction 0.465937405958823 Functional Gain - B3GNT4 ENSG00000176383 CDS Human protein_coding chr12:122690929 chr12:122690928 nonsynonymous SNV 0.346 2 20 hm7G_associated_SNPs_23414 0 0 0 0 1 B3GNT4 chr12:122690865 3'AG 122690865 Downstream 64bp 21596 chr3 3085339 3085339 1 + G T COAD 3085340 + 3085320 3085360 41 TCCAAAATTATCCTGAATTGGGATCAAGTGAAGGCCCTGGA TCCAAAATTATCCTGAATTTGGATCAAGTGAAGGCCCTGGA < 41bp 0.448558568190651 0.732948628215121 NA NA prediction 0.465897256430243 Functional Gain - CNTN4 ENSG00000144619 CDS Human protein_coding chr3:3085340 chr3:3085339 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23416 0 0 0 0 2 CNTN4 chr3:3085276 3'AG 3085276 Downstream 64bp 21597 chr3 3085339 3085339 1 + G T COAD 3085340 + 3085320 3085360 41 TCCAAAATTATCCTGAATTGGGATCAAGTGAAGGCCCTGGA TCCAAAATTATCCTGAATTTGGATCAAGTGAAGGCCCTGGA < 41bp 0.448558568190651 0.732948628215121 NA NA prediction 0.465897256430243 Functional Gain - CNTN4 ENSG00000144619 CDS Human protein_coding chr3:3085340 chr3:3085339 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23416 0 0 0 0 2 CNTN4 chr3:3085388 5'GT 3085388 Upstream 50bp 21598 chr19 15769193 15769193 1 + G T STAD 15769194 + 15769174 15769214 41 ATTGTGCTCCCAGACGGCCGGGTCATCCCCAAAGGTGCCAC ATTGTGCTCCCAGACGGCCTGGTCATCCCCAAAGGTGCCAC < 41bp 0.660009537609281 0.892921905341921 NA NA prediction 0.465824735465278 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15769194 chr19:15769193 nonsynonymous SNV 0.778 2 20 hm7G_associated_SNPs_23417 0 0 0 0 1 CYP4F3 chr19:15769207 5'GT 15769207 Upstream 15bp 21599 chr2 203624028 203624028 1 + G T LUSC 203624029 + 203624009 203624049 41 AACAGTTATATGTTCAAAAGGGAACCTCCTGAGGGCTGTGA AACAGTTATATGTTCAAAATGGAACCTCCTGAGGGCTGTGA < 41bp 0.654656514547307 0.887537251613405 NA NA prediction 0.465761474132197 Functional Gain - FAM117B ENSG00000138439 CDS Human protein_coding chr2:203624029 chr2:203624028 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23419 0 0 1 0 2 FAM117B chr2:203623956 3'AG 203623956 Downstream 73bp 21600 chr2 203624028 203624028 1 + G T LUSC 203624029 + 203624009 203624049 41 AACAGTTATATGTTCAAAAGGGAACCTCCTGAGGGCTGTGA AACAGTTATATGTTCAAAATGGAACCTCCTGAGGGCTGTGA < 41bp 0.654656514547307 0.887537251613405 NA NA prediction 0.465761474132197 Functional Gain - FAM117B ENSG00000138439 CDS Human protein_coding chr2:203624029 chr2:203624028 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23419 0 0 1 0 2 FAM117B chr2:203624076 5'GT 203624076 Upstream 49bp 21601 chr14 97326983 97326983 1 + G T UCEC 97326984 + 97326964 97327004 41 ACGTGACATTCTTTTGCAAGGACTAAAAGCTATAGGAAGTA ACGTGACATTCTTTTGCAATGACTAAAAGCTATAGGAAGTA < 41bp 0.638139106667999 0.8710180053798 NA NA prediction 0.465757797423602 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97326984 chr14:97326983 stopgain 1.000 1 20 hm7G_associated_SNPs_23420 0 0 1 0 2 VRK1 chr14:97326894 3'AG 97326894 Downstream 90bp 21602 chr14 97326983 97326983 1 + G T UCEC 97326984 + 97326964 97327004 41 ACGTGACATTCTTTTGCAAGGACTAAAAGCTATAGGAAGTA ACGTGACATTCTTTTGCAATGACTAAAAGCTATAGGAAGTA < 41bp 0.638139106667999 0.8710180053798 NA NA prediction 0.465757797423602 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97326984 chr14:97326983 stopgain 1.000 1 20 hm7G_associated_SNPs_23420 0 0 1 0 2 VRK1 chr14:97327072 5'GT 97327072 Upstream 90bp 21603 chr1 221057636 221057636 1 + G T LUAD 221057637 + 221057617 221057657 41 GGCTGGCGAGAAGCCATCAGGTGGAGCCCCGGCTGCGGATG GGCTGGCGAGAAGCCATCATGTGGAGCCCCGGCTGCGGATG < 41bp 0.404727053169655 0.73287762949463 NA NA prediction 0.46575525898926 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221057637 chr1:221057636 nonsynonymous SNV 0.022 1 20 hm7G_associated_SNPs_23421 0 0 0 0 1 HLX chr1:221057537 3'AG 221057537 Downstream 100bp 21604 chr17 7287058 7287058 1 + G T UCEC 7287059 + 7287039 7287079 41 TGTCAAGTCCCTCCGGGTAGGTCCCGAAGGCCCGATGGGCA TGTCAAGTCCCTCCGGGTATGTCCCGAAGGCCCGATGGGCA < 41bp 0.65378145533558 0.88665825251282 NA NA prediction 0.465753594354481 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7287059 chr17:7287058 nonsynonymous SNV 0.399 2 20 hm7G_associated_SNPs_23422 0 0 0 0 1 TNK1 chr17:7287028 3'AG 7287028 Downstream 31bp 21605 chr13 24465574 24465574 1 + G T rs184736262 24465575 + 24465555 24465595 41 ACAATGCTGCCAGAGGCCTGGTCCTCAGAGCTCACGTAAGC ACAATGCTGCCAGAGGCCTTGTCCTCAGAGCTCACGTAAGC < 41bp 0.590992116666914 0.823849602146539 NA NA prediction 0.465714970959252 Functional Gain - C1QTNF9B;PCOTH ENSG00000205863 CDS Human protein_coding chr13:24465575 chr13:24465574 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_23423 0 0 0 0 3 C1QTNF9B chr13:24465524 3'AG 24465524 Downstream 51bp 21606 chr13 24465574 24465574 1 + G T rs184736262 24465575 + 24465555 24465595 41 ACAATGCTGCCAGAGGCCTGGTCCTCAGAGCTCACGTAAGC ACAATGCTGCCAGAGGCCTTGTCCTCAGAGCTCACGTAAGC < 41bp 0.590992116666914 0.823849602146539 NA NA prediction 0.465714970959252 Functional Gain - C1QTNF9B;PCOTH ENSG00000205863 CDS Human protein_coding chr13:24465575 chr13:24465574 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_23423 0 0 0 0 3 C1QTNF9B;PCOTH chr13:24465589 5'GT 24465589 Upstream 16bp 21607 chr13 24465574 24465574 1 + G T rs184736262 24465575 + 24465555 24465595 41 ACAATGCTGCCAGAGGCCTGGTCCTCAGAGCTCACGTAAGC ACAATGCTGCCAGAGGCCTTGTCCTCAGAGCTCACGTAAGC < 41bp 0.590992116666914 0.823849602146539 NA NA prediction 0.465714970959252 Functional Gain - C1QTNF9B;PCOTH ENSG00000205863 CDS Human protein_coding chr13:24465575 chr13:24465574 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_23423 0 0 0 0 3 C1QTNF9B;PCOTH chr13:24465670 5'GT 24465670 Upstream 97bp 21608 chr19 4224135 4224135 1 + G T rs565232242 4224136 + 4224116 4224156 41 GCCCACAGGAAGCTGCCAGGGACCACTCCAGCGTGGTGGCT GCCCACAGGAAGCTGCCAGTGACCACTCCAGCGTGGTGGCT < 41bp 0.386827879455107 0.732841156545344 NA NA prediction 0.465682313090688 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4224136 chr19:4224135 nonsynonymous SNV 0.066 1 20 hm7G_associated_SNPs_23424 0 0 0 0 2 ANKRD24 chr19:4224124 3'AG 4224124 Downstream 12bp 21609 chr19 4224135 4224135 1 + G T rs565232242 4224136 + 4224116 4224156 41 GCCCACAGGAAGCTGCCAGGGACCACTCCAGCGTGGTGGCT GCCCACAGGAAGCTGCCAGTGACCACTCCAGCGTGGTGGCT < 41bp 0.386827879455107 0.732841156545344 NA NA prediction 0.465682313090688 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4224136 chr19:4224135 nonsynonymous SNV 0.066 1 20 hm7G_associated_SNPs_23424 0 0 0 0 2 ANKRD24 chr19:4224189 5'GT 4224189 Upstream 55bp 21610 chr8 105361777 105361777 1 + G T STAD 105361778 + 105361758 105361798 41 GCAGTTTCAAAGCTTGCCAGGGTTTGAGGTTCACTTGAAAC GCAGTTTCAAAGCTTGCCATGGTTTGAGGTTCACTTGAAAC < 41bp 0.654740443297468 0.88757645399415 NA NA prediction 0.465672021393363 Functional Gain - DCSTAMP ENSG00000164935 CDS Human protein_coding chr8:105361778 chr8:105361777 nonsynonymous SNV 0.375 3 20 hm7G_associated_SNPs_23425 0 0 0 0 1 DCSTAMP chr8:105361809 5'GT 105361809 Upstream 33bp 21611 chr12 21355454 21355454 1 + G T LUAD 21355455 + 21355435 21355475 41 CATACCTATTTTTGCAAGTGGAATGTTTTTAGGAGGATATA CATACCTATTTTTGCAAGTTGAATGTTTTTAGGAGGATATA < 41bp 0.440220614129652 0.732835148030042 NA NA prediction 0.465670296060084 Functional Gain - SLCO1B1 ENSG00000134538 CDS Human protein_coding chr12:21355455 chr12:21355454 stopgain 0.916 1 20 hm7G_associated_SNPs_23426 0 0 0 0 1 SLCO1B1 chr12:21355425 3'AG 21355425 Downstream 30bp 21612 chr11 118881519 118881519 1 + G T GBM 118881520 + 118881500 118881540 41 TGGATTCCTATGAAGAAAAGGAGGATAAAGTGATCAAGGAG TGGATTCCTATGAAGAAAATGAGGATAAAGTGATCAAGGAG < 41bp 0.647806936003627 0.880640710984141 NA NA prediction 0.465667549961027 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118881520 chr11:118881519 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_23427 0 0 1 0 2 CCDC84 chr11:118881474 3'AG 118881474 Downstream 46bp 21613 chr11 118881519 118881519 1 + G T GBM 118881520 + 118881500 118881540 41 TGGATTCCTATGAAGAAAAGGAGGATAAAGTGATCAAGGAG TGGATTCCTATGAAGAAAATGAGGATAAAGTGATCAAGGAG < 41bp 0.647806936003627 0.880640710984141 NA NA prediction 0.465667549961027 Functional Gain - CCDC84 ENSG00000186166 CDS Human protein_coding chr11:118881520 chr11:118881519 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_23427 0 0 1 0 2 CCDC84 chr11:118881540 5'GT 118881540 Upstream 22bp 21614 chr3 130137748 130137748 1 + G T COAD 130137749 + 130137729 130137769 41 CTGGAGATCTAGGGCCAGTGGGGCAAACTGGGCAGCGAGGA CTGGAGATCTAGGGCCAGTTGGGCAAACTGGGCAGCGAGGA < 41bp 0.400203259484466 0.732823233104111 NA NA prediction 0.465646466208222 Functional Gain - COL6A5 ENSG00000172752 CDS Human protein_coding chr3:130137749 chr3:130137748 synonymous SNV . 0 20 hm7G_associated_SNPs_23429 0 0 1 0 2 COL6A5 chr3:130137713 3'AG 130137713 Downstream 36bp 21615 chr3 130137748 130137748 1 + G T COAD 130137749 + 130137729 130137769 41 CTGGAGATCTAGGGCCAGTGGGGCAAACTGGGCAGCGAGGA CTGGAGATCTAGGGCCAGTTGGGCAAACTGGGCAGCGAGGA < 41bp 0.400203259484466 0.732823233104111 NA NA prediction 0.465646466208222 Functional Gain - COL6A5 ENSG00000172752 CDS Human protein_coding chr3:130137749 chr3:130137748 synonymous SNV . 0 20 hm7G_associated_SNPs_23429 0 0 1 0 2 COL6A5 chr3:130137775 5'GT 130137775 Upstream 28bp 21616 chr13 25264547 25264547 1 + G T LIHC 25264548 + 25264528 25264568 41 TGGTGGTGGGGGACATTGTGGAGGTCAAAGGAGGAGACCAG TGGTGGTGGGGGACATTGTTGAGGTCAAAGGAGGAGACCAG < 41bp 0.665399112132812 0.898204495055435 NA NA prediction 0.465610765845246 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264548 chr13:25264547 synonymous SNV . 0 20 hm7G_associated_SNPs_23432 0 0 0 0 2 ATP12A chr13:25264476 3'AG 25264476 Downstream 72bp 21617 chr13 25264547 25264547 1 + G T LIHC 25264548 + 25264528 25264568 41 TGGTGGTGGGGGACATTGTGGAGGTCAAAGGAGGAGACCAG TGGTGGTGGGGGACATTGTTGAGGTCAAAGGAGGAGACCAG < 41bp 0.665399112132812 0.898204495055435 NA NA prediction 0.465610765845246 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264548 chr13:25264547 synonymous SNV . 0 20 hm7G_associated_SNPs_23432 0 0 0 0 2 ATP12A chr13:25264610 5'GT 25264610 Upstream 64bp 21618 chr22 39814776 39814776 1 + G T PRAD 39814777 + 39814757 39814797 41 TGCAAATCGACAGTGGATGGGTTGCAGGTGACACAGCTGAA TGCAAATCGACAGTGGATGTGTTGCAGGTGACACAGCTGAA < 41bp 0.658692120501218 0.891497449410001 NA NA prediction 0.465610657817566 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39814777 chr22:39814776 nonsynonymous SNV 0.702 4 20 hm7G_associated_SNPs_23433 0 0 1 0 2 TAB1 chr22:39814737 3'AG 39814737 Downstream 40bp 21619 chr22 39814776 39814776 1 + G T PRAD 39814777 + 39814757 39814797 41 TGCAAATCGACAGTGGATGGGTTGCAGGTGACACAGCTGAA TGCAAATCGACAGTGGATGTGTTGCAGGTGACACAGCTGAA < 41bp 0.658692120501218 0.891497449410001 NA NA prediction 0.465610657817566 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39814777 chr22:39814776 nonsynonymous SNV 0.702 4 20 hm7G_associated_SNPs_23433 0 0 1 0 2 TAB1 chr22:39814850 5'GT 39814850 Upstream 75bp 21620 chr14 65007625 65007625 1 + G T BRCA 65007626 + 65007606 65007646 41 CACCACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGG CACCACCTATTCGTGCGTCTGGGTCTTCCAACATGGCAAGG < 41bp 0.644440838786759 0.877243404787225 NA NA prediction 0.465605132000931 Functional Gain - HSPA2 ENSG00000126803 CDS Human protein_coding chr14:65007626 chr14:65007625 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_23435 0 0 0 0 1 HSPA2 chr14:65007563 3'AG 65007563 Downstream 63bp 21621 chr17 7534132 7534132 1 + G T HNSC 7534133 + 7534113 7534153 41 ATCCAACTGCACAATCACTGGGCCCAGCTTACGGTGGGTGC ATCCAACTGCACAATCACTTGGCCCAGCTTACGGTGGGTGC < 41bp 0.635250932236664 0.868048966193389 NA NA prediction 0.46559606791345 Functional Gain - SHBG ENSG00000129214 CDS Human protein_coding chr17:7534133 chr17:7534132 nonsynonymous SNV 0.120 0 20 hm7G_associated_SNPs_23436 0 0 0 0 1 SHBG chr17:7534187 5'GT 7534187 Upstream 56bp 21622 chr15 56657857 56657857 1 + G T UCEC 56657858 + 56657838 56657878 41 CCGACCTCCTCGCCTTGGAGGAAGAATATAAGTAAGAAATT CCGACCTCCTCGCCTTGGATGAAGAATATAAGTAAGAAATT < 41bp 0.570891356716567 0.803667030319207 NA NA prediction 0.465551347205279 Functional Gain - TEX9 ENSG00000151575 CDS Human protein_coding chr15:56657858 chr15:56657857 nonsynonymous SNV 0.380 4 20 hm7G_associated_SNPs_23437 0 0 0 0 2 TEX9 chr15:56657777 3'AG 56657777 Downstream 81bp 21623 chr15 56657857 56657857 1 + G T UCEC 56657858 + 56657838 56657878 41 CCGACCTCCTCGCCTTGGAGGAAGAATATAAGTAAGAAATT CCGACCTCCTCGCCTTGGATGAAGAATATAAGTAAGAAATT < 41bp 0.570891356716567 0.803667030319207 NA NA prediction 0.465551347205279 Functional Gain - TEX9 ENSG00000151575 CDS Human protein_coding chr15:56657858 chr15:56657857 nonsynonymous SNV 0.380 4 20 hm7G_associated_SNPs_23437 0 0 0 0 2 TEX9 chr15:56657868 5'GT 56657868 Upstream 12bp 21624 chr2 239037448 239037448 1 + G T LUSC 239037449 + 239037429 239037469 41 GACGGGCTGGTGCCCACGCGGGATGAGCGCGGCCAGCCCAT GACGGGCTGGTGCCCACGCTGGATGAGCGCGGCCAGCCCAT < 41bp 0.668650282367617 0.901424126025641 NA NA prediction 0.465547687316048 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239037449 chr2:239037448 nonsynonymous SNV 0.526 0 20 hm7G_associated_SNPs_23438 0 0 0 0 1 ESPNL chr2:239037545 5'GT 239037545 Upstream 98bp 21625 chr7 142564291 142564291 1 + G T LUAD 142564292 + 142564272 142564312 41 GGGCATCCAACAGCATCACGGTGTCCTGGCCGCAGCCCGAC GGGCATCCAACAGCATCACTGTGTCCTGGCCGCAGCCCGAC < 41bp 0.378835402342888 0.732757192082 NA NA prediction 0.465514384163999 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564292 chr7:142564291 synonymous SNV . 0 20 hm7G_associated_SNPs_23439 0 0 0 0 2 EPHB6 chr7:142564236 3'AG 142564236 Downstream 56bp 21626 chr7 142564291 142564291 1 + G T LUAD 142564292 + 142564272 142564312 41 GGGCATCCAACAGCATCACGGTGTCCTGGCCGCAGCCCGAC GGGCATCCAACAGCATCACTGTGTCCTGGCCGCAGCCCGAC < 41bp 0.378835402342888 0.732757192082 NA NA prediction 0.465514384163999 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564292 chr7:142564291 synonymous SNV . 0 20 hm7G_associated_SNPs_23439 0 0 0 0 2 EPHB6 chr7:142564360 5'GT 142564360 Upstream 70bp 21627 chr19 39667262 39667262 1 + G T LUAD 39667263 + 39667243 39667283 41 ACTTTGGGTTCTGCGCCCAGGTGAGCAAGGAAGTGCCCCGA ACTTTGGGTTCTGCGCCCATGTGAGCAAGGAAGTGCCCCGA < 41bp 0.661564607751097 0.894319859631096 NA NA prediction 0.465510503759998 Functional Gain - PAK4 ENSG00000130669 CDS Human protein_coding chr19:39667263 chr19:39667262 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_23440 0 0 1 0 2 PAK4 chr19:39667230 3'AG 39667230 Downstream 33bp 21628 chr19 39667262 39667262 1 + G T LUAD 39667263 + 39667243 39667283 41 ACTTTGGGTTCTGCGCCCAGGTGAGCAAGGAAGTGCCCCGA ACTTTGGGTTCTGCGCCCATGTGAGCAAGGAAGTGCCCCGA < 41bp 0.661564607751097 0.894319859631096 NA NA prediction 0.465510503759998 Functional Gain - PAK4 ENSG00000130669 CDS Human protein_coding chr19:39667263 chr19:39667262 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_23440 0 0 1 0 2 PAK4 chr19:39667355 5'GT 39667355 Upstream 94bp 21629 chr18 20548849 20548849 1 + G T LUSC 20548850 + 20548830 20548870 41 CAAGAGTTTGAAAATATCCGGCAGCAGAATCTTAAACTTAT CAAGAGTTTGAAAATATCCTGCAGCAGAATCTTAAACTTAT < 41bp 0.411802284882489 0.732737518694519 NA NA prediction 0.465475037389038 Functional Gain - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20548850 chr18:20548849 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23442 0 0 1 0 2 RBBP8 chr18:20548769 3'AG 20548769 Downstream 81bp 21630 chr18 20548849 20548849 1 + G T LUSC 20548850 + 20548830 20548870 41 CAAGAGTTTGAAAATATCCGGCAGCAGAATCTTAAACTTAT CAAGAGTTTGAAAATATCCTGCAGCAGAATCTTAAACTTAT < 41bp 0.411802284882489 0.732737518694519 NA NA prediction 0.465475037389038 Functional Gain - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20548850 chr18:20548849 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23442 0 0 1 0 2 RBBP8 chr18:20548881 5'GT 20548881 Upstream 33bp 21631 chr20 2375122 2375122 1 + G T LUSC 2375123 + 2375103 2375143 41 AGAGTCACCAAGGTGGACTGGCAGCGGTCGAGGAATGGCGC AGAGTCACCAAGGTGGACTTGCAGCGGTCGAGGAATGGCGC < 41bp 0.660981939908504 0.893701015441907 NA NA prediction 0.465438151066806 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375123 chr20:2375122 nonsynonymous SNV 0.958 1 20 hm7G_associated_SNPs_23444 0 0 0 0 1 TGM6 chr20:2375098 3'AG 2375098 Downstream 25bp 21632 chr12 58114262 58114262 1 + G T HNSC 58114263 + 58114243 58114283 41 CACGTTGGCTGACTGATGAGGACACGAGAAACCTCAAGGAG CACGTTGGCTGACTGATGATGACACGAGAAACCTCAAGGAG < 41bp 0.653045311174952 0.885764170357087 NA NA prediction 0.465437718364272 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58114263 chr12:58114262 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_23445 0 0 1 0 2 OS9 chr12:58114189 3'AG 58114189 Downstream 74bp 21633 chr12 58114262 58114262 1 + G T HNSC 58114263 + 58114243 58114283 41 CACGTTGGCTGACTGATGAGGACACGAGAAACCTCAAGGAG CACGTTGGCTGACTGATGATGACACGAGAAACCTCAAGGAG < 41bp 0.653045311174952 0.885764170357087 NA NA prediction 0.465437718364272 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58114263 chr12:58114262 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_23445 0 0 1 0 2 OS9 chr12:58114301 5'GT 58114301 Upstream 40bp 21634 chr10 105781458 105781458 1 + G T UCEC 105781459 + 105781439 105781479 41 AACATAGCCAAGAATTAAAGGAGTGGAGAGAGAAATTGAGA AACATAGCCAAGAATTAAATGAGTGGAGAGAGAAATTGAGA < 41bp 0.63816879925124 0.87086192420943 NA NA prediction 0.46538624991638 Functional Gain - SLK ENSG00000065613 CDS Human protein_coding chr10:105781459 chr10:105781458 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23447 0 0 1 0 2 SLK chr10:105781378 3'AG 105781378 Downstream 81bp 21635 chr10 105781458 105781458 1 + G T UCEC 105781459 + 105781439 105781479 41 AACATAGCCAAGAATTAAAGGAGTGGAGAGAGAAATTGAGA AACATAGCCAAGAATTAAATGAGTGGAGAGAGAAATTGAGA < 41bp 0.63816879925124 0.87086192420943 NA NA prediction 0.46538624991638 Functional Gain - SLK ENSG00000065613 CDS Human protein_coding chr10:105781459 chr10:105781458 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23447 0 0 1 0 2 SLK chr10:105781491 5'GT 105781491 Upstream 34bp 21636 chr12 54910050 54910050 1 + G T LUSC 54910051 + 54910031 54910071 41 AGAGAGTGGCAGACATAAAGGAGAGCAAGGAACATGTAATT AGAGAGTGGCAGACATAAATGAGAGCAAGGAACATGTAATT < 41bp 0.454138601590512 0.732680489244904 NA NA prediction 0.465360978489809 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54910051 chr12:54910050 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23448 0 0 1 0 2 NCKAP1L chr12:54910023 3'AG 54910023 Downstream 28bp 21637 chr12 54910050 54910050 1 + G T LUSC 54910051 + 54910031 54910071 41 AGAGAGTGGCAGACATAAAGGAGAGCAAGGAACATGTAATT AGAGAGTGGCAGACATAAATGAGAGCAAGGAACATGTAATT < 41bp 0.454138601590512 0.732680489244904 NA NA prediction 0.465360978489809 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54910051 chr12:54910050 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23448 0 0 1 0 2 NCKAP1L chr12:54910079 5'GT 54910079 Upstream 30bp 21638 chr13 31513847 31513847 1 + G T LUAD 31513848 + 31513828 31513868 41 TAGCAGATGACCCCAACTGGGATTCCTATGCTACCACTATG TAGCAGATGACCCCAACTGTGATTCCTATGCTACCACTATG < 41bp 0.408586365799946 0.732666483512645 NA NA prediction 0.465332967025289 Functional Gain - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31513848 chr13:31513847 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_23449 0 0 0 0 2 TEX26 chr13:31513831 3'AG 31513831 Downstream 17bp 21639 chr13 31513847 31513847 1 + G T LUAD 31513848 + 31513828 31513868 41 TAGCAGATGACCCCAACTGGGATTCCTATGCTACCACTATG TAGCAGATGACCCCAACTGTGATTCCTATGCTACCACTATG < 41bp 0.408586365799946 0.732666483512645 NA NA prediction 0.465332967025289 Functional Gain - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31513848 chr13:31513847 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_23449 0 0 0 0 2 TEX26 chr13:31513915 5'GT 31513915 Upstream 69bp 21640 chr2 241631685 241631685 1 + G T UCEC 241631686 + 241631666 241631706 41 TGTTGAAGCTGGCGGCACAGGGGCTGGGCATGCAGGCCGCC TGTTGAAGCTGGCGGCACATGGGCTGGGCATGCAGGCCGCC < 41bp 0.660651261519251 0.893313267992751 NA NA prediction 0.465324012947 Functional Gain - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631686 chr2:241631685 nonsynonymous SNV 0.564 1 20 hm7G_associated_SNPs_23450 0 0 0 0 1 AQP12A chr2:241631629 3'AG 241631629 Downstream 57bp 21641 chr16 11003006 11003006 1 + G T UCEC 11003007 + 11002987 11003027 41 TCAAAGCCAAGTCCCTGAAGGATGTGGAAGACCTGGGAAAG TCAAAGCCAAGTCCCTGAATGATGTGGAAGACCTGGGAAAG < 41bp 0.659567354635239 0.892220733412089 NA NA prediction 0.4653067575537 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11003007 chr16:11003006 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_23451 0 0 0 0 1 CIITA chr16:11003044 5'GT 11003044 Upstream 39bp 21642 chr17 7756374 7756374 1 + G T CESC 7756375 + 7756355 7756395 41 CAACGCGAGAGCCTGGTGCGGGCAGGGAAGAAAATCGCTTA CAACGCGAGAGCCTGGTGCTGGCAGGGAAGAAAATCGCTTA < 41bp 0.655021415096194 0.887673452708594 NA NA prediction 0.465304075224799 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7756375 chr17:7756374 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23452 0 0 1 0 2 KDM6B chr17:7756318 3'AG 7756318 Downstream 57bp 21643 chr17 7756374 7756374 1 + G T CESC 7756375 + 7756355 7756395 41 CAACGCGAGAGCCTGGTGCGGGCAGGGAAGAAAATCGCTTA CAACGCGAGAGCCTGGTGCTGGCAGGGAAGAAAATCGCTTA < 41bp 0.655021415096194 0.887673452708594 NA NA prediction 0.465304075224799 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7756375 chr17:7756374 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23452 0 0 1 0 2 KDM6B chr17:7756444 5'GT 7756444 Upstream 71bp 21644 chr4 81974563 81974563 1 + G T LUAD 81974564 + 81974544 81974584 41 GCTGTGGGGGTCGTTCCTGGGATTCCTGAGCCTTGCTGTGT GCTGTGGGGGTCGTTCCTGTGATTCCTGAGCCTTGCTGTGT < 41bp 0.628063740089831 0.860711098734482 NA NA prediction 0.465294717289301 Functional Gain - BMP3 ENSG00000152785 CDS Human protein_coding chr4:81974564 chr4:81974563 nonsynonymous SNV 0.856 4 20 hm7G_associated_SNPs_23454 0 0 0 0 1 BMP3 chr4:81974499 3'AG 81974499 Downstream 65bp 21645 chr16 25238510 25238510 1 + G T LUAD 25238511 + 25238491 25238531 41 CCTGGCTGGCCTGCTTGTTGGACTGCTCATTAGGTAGGAGT CCTGGCTGGCCTGCTTGTTTGACTGCTCATTAGGTAGGAGT < 41bp 0.397756134764935 0.73262027337849 NA NA prediction 0.465240546756981 Functional Gain - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25238511 chr16:25238510 stopgain 0.986 0 20 hm7G_associated_SNPs_23458 0 0 0 0 1 AQP8 chr16:25238523 5'GT 25238523 Upstream 14bp 21646 chr6 118596725 118596725 1 + G T LUSC 118596726 + 118596706 118596746 41 TCCGAACTCTGAGCCGAGTGGAATTCCTGGGAATGATTGGT TCCGAACTCTGAGCCGAGTTGAATTCCTGGGAATGATTGGT < 41bp 0.40834638249665 0.732608357260599 NA NA prediction 0.465216714521199 Functional Gain - SLC35F1 ENSG00000196376 CDS Human protein_coding chr6:118596726 chr6:118596725 synonymous SNV . 0 20 hm7G_associated_SNPs_23459 0 0 1 0 1 SLC35F1 chr6:118596778 5'GT 118596778 Upstream 54bp 21647 chr11 28318381 28318381 1 + G T rs375725564 28318382 + 28318362 28318402 41 CTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAA CTATCCTAAGAACATACGGTGAGGAGAAGCATGCCAAGAAA < 41bp 0.41070123754243 0.732606588978517 NA NA prediction 0.465213177957034 Functional Gain - METTL15 ENSG00000169519 CDS Human protein_coding chr11:28318382 chr11:28318381 stopgain 0.969 1 20 hm7G_associated_SNPs_23460 0 0 0 0 3 METTL15 chr11:28318300 3'AG 28318300 Downstream 82bp 21648 chr11 28318381 28318381 1 + G T rs375725564 28318382 + 28318362 28318402 41 CTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAA CTATCCTAAGAACATACGGTGAGGAGAAGCATGCCAAGAAA < 41bp 0.41070123754243 0.732606588978517 NA NA prediction 0.465213177957034 Functional Gain - METTL15 ENSG00000169519 CDS Human protein_coding chr11:28318382 chr11:28318381 stopgain 0.969 1 20 hm7G_associated_SNPs_23460 0 0 0 0 3 METTL15 chr11:28318344 3'AG 28318344 Downstream 38bp 21649 chr11 28318381 28318381 1 + G T rs375725564 28318382 + 28318362 28318402 41 CTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAA CTATCCTAAGAACATACGGTGAGGAGAAGCATGCCAAGAAA < 41bp 0.41070123754243 0.732606588978517 NA NA prediction 0.465213177957034 Functional Gain - METTL15 ENSG00000169519 CDS Human protein_coding chr11:28318382 chr11:28318381 stopgain 0.969 1 20 hm7G_associated_SNPs_23460 0 0 0 0 3 METTL15 chr11:28318478 5'GT 28318478 Upstream 98bp 21650 chr6 117246759 117246759 1 + G T SKCM 117246760 + 117246740 117246780 41 TCTGCCATCCAGTCAACCTGGAGGCCTAGGCCCTGCTCTGC TCTGCCATCCAGTCAACCTTGAGGCCTAGGCCCTGCTCTGC < 41bp 0.388725886289232 0.732595220915722 NA NA prediction 0.465190441831444 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117246760 chr6:117246759 stopgain 0.011 0 20 hm7G_associated_SNPs_23461 0 0 0 0 1 RFX6 chr6:117246822 5'GT 117246822 Upstream 64bp 21651 chr17 44039764 44039764 1 + G T UCEC 44039765 + 44039745 44039785 41 CGCTGGGACGTACGGGTTGGGGGACAGGAAAGATCAGGGGG CGCTGGGACGTACGGGTTGTGGGACAGGAAAGATCAGGGGG < 41bp 0.415303076234006 0.73259212141366 NA NA prediction 0.46518424282732 Functional Gain - MAPT ENSG00000186868 CDS Human protein_coding chr17:44039765 chr17:44039764 nonsynonymous SNV 0.645 3 20 hm7G_associated_SNPs_23462 0 0 0 0 2 MAPT chr17:44039687 3'AG 44039687 Downstream 78bp 21652 chr17 44039764 44039764 1 + G T UCEC 44039765 + 44039745 44039785 41 CGCTGGGACGTACGGGTTGGGGGACAGGAAAGATCAGGGGG CGCTGGGACGTACGGGTTGTGGGACAGGAAAGATCAGGGGG < 41bp 0.415303076234006 0.73259212141366 NA NA prediction 0.46518424282732 Functional Gain - MAPT ENSG00000186868 CDS Human protein_coding chr17:44039765 chr17:44039764 nonsynonymous SNV 0.645 3 20 hm7G_associated_SNPs_23462 0 0 0 0 2 MAPT chr17:44039836 5'GT 44039836 Upstream 73bp 21653 chr6 10926647 10926647 1 + G T OV 10926648 + 10926628 10926668 41 AGACAGGGAGAGTCCCAGTGGCCTTGAAAGAGAAACAGGTA AGACAGGGAGAGTCCCAGTTGCCTTGAAAGAGAAACAGGTA < 41bp 0.417652483871731 0.732578780460505 NA NA prediction 0.46515756092101 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10926648 chr6:10926647 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23463 0 0 0 0 2 SYCP2L chr6:10926572 3'AG 10926572 Downstream 76bp 21654 chr6 10926647 10926647 1 + G T OV 10926648 + 10926628 10926668 41 AGACAGGGAGAGTCCCAGTGGCCTTGAAAGAGAAACAGGTA AGACAGGGAGAGTCCCAGTTGCCTTGAAAGAGAAACAGGTA < 41bp 0.417652483871731 0.732578780460505 NA NA prediction 0.46515756092101 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10926648 chr6:10926647 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23463 0 0 0 0 2 SYCP2L chr6:10926665 5'GT 10926665 Upstream 19bp 21655 chr6 55147036 55147036 1 + G T UCEC 55147037 + 55147017 55147057 41 TGCCAGGAAAATTTCGAGAGGAATTTAAAGCTGCGTTTTCT TGCCAGGAAAATTTCGAGATGAATTTAAAGCTGCGTTTTCT < 41bp 0.627418350751704 0.859974794253072 NA NA prediction 0.465112887002737 Functional Gain - HCRTR2 ENSG00000137252 CDS Human protein_coding chr6:55147037 chr6:55147036 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23467 0 0 0 0 1 HCRTR2 chr6:55147023 3'AG 55147023 Downstream 14bp 21656 chr10 89717663 89717663 1 + G T UCEC 89717664 + 89717644 89717684 41 GATATATTCCTCCAATTCAGGACCCACACGACGGGAAGACA GATATATTCCTCCAATTCATGACCCACACGACGGGAAGACA < 41bp 0.650589093386187 0.883142526466093 NA NA prediction 0.465106866159812 Functional Gain - PTEN ENSG00000171862 CDS Human protein_coding chr10:89717664 chr10:89717663 stopgain 1.000 0 20 hm7G_associated_SNPs_23468 0 0 1 0 1 PTEN chr10:89717610 3'AG 89717610 Downstream 54bp 21657 chr2 190660536 190660536 1 + G T rs143323454 190660537 + 190660517 190660557 41 TTGAGGTGCGAGATAACGGGGAGGGTATCAAGGCTGTTGAT TTGAGGTGCGAGATAACGGTGAGGGTATCAAGGCTGTTGAT < 41bp 0.421163405170426 0.732553074833682 NA NA prediction 0.465106149667363 Functional Gain - PMS1 ENSG00000064933 CDS Human protein_coding chr2:190660537 chr2:190660536 synonymous SNV . 0 20 hm7G_associated_SNPs_23469 1 0 1 1 1 PMS1 chr2:190660495 3'AG 190660495 Downstream 42bp 21658 chr19 54416232 54416232 1 + G T BLCA 54416233 + 54416213 54416253 41 CGCAGAACCAGACCACCGAGGTCAAGATGGCCCTGCACGCC CGCAGAACCAGACCACCGATGTCAAGATGGCCCTGCACGCC < 41bp 0.656591463010069 0.889129933794377 NA NA prediction 0.465076941568615 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54416233 chr19:54416232 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_23470 0 0 0 0 1 CACNG7 chr19:54416281 5'GT 54416281 Upstream 50bp 21659 chr17 56403001 56403001 1 - C A rs150017839 56403000 - 56402980 56403020 41 CTAGCCCGCCAGCGAGCCCGGGACCTCAGTGAGACAGCCAG CTAGCCCGCCAGCGAGCCCTGGACCTCAGTGAGACAGCCAG < 41bp 0.374905960132022 0.732537638059976 NA NA prediction 0.465075276119953 Functional Gain - TSPOAP1 ENSG00000005379 CDS Human protein_coding chr17:56403000 chr17:56403001 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_23471 0 0 0 0 1 TSPOAP1 chr17:56403074 3'AG 56403074 Downstream 74bp 21660 chr1 166815893 166815893 1 + G T COAD 166815894 + 166815874 166815914 41 CCATATATTTTTCCGATGAGGAATGGGAAGTTTTGACGGAG CCATATATTTTTCCGATGATGAATGGGAAGTTTTGACGGAG < 41bp 0.653296402885403 0.88582034163957 NA NA prediction 0.465047877508333 Functional Gain - POGK ENSG00000143157 CDS Human protein_coding chr1:166815894 chr1:166815893 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_23472 0 0 1 0 2 POGK chr1:166815849 3'AG 166815849 Downstream 45bp 21661 chr1 166815893 166815893 1 + G T COAD 166815894 + 166815874 166815914 41 CCATATATTTTTCCGATGAGGAATGGGAAGTTTTGACGGAG CCATATATTTTTCCGATGATGAATGGGAAGTTTTGACGGAG < 41bp 0.653296402885403 0.88582034163957 NA NA prediction 0.465047877508333 Functional Gain - POGK ENSG00000143157 CDS Human protein_coding chr1:166815894 chr1:166815893 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_23472 0 0 1 0 2 POGK chr1:166815975 5'GT 166815975 Upstream 83bp 21662 chr19 5667374 5667374 1 + G T UCEC 5667375 + 5667355 5667395 41 AAGGGGCAGACGTGACTGGGGGGACCATGGCCGAAGAGAGG AAGGGGCAGACGTGACTGGTGGGACCATGGCCGAAGAGAGG < 41bp 0.664805130047736 0.897299242884265 NA NA prediction 0.464988225673058 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667375 chr19:5667374 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23474 0 0 1 0 3 SAFB chr19:5667358 3'AG 5667358 Downstream 17bp 21663 chr19 5667374 5667374 1 + G T UCEC 5667375 + 5667355 5667395 41 AAGGGGCAGACGTGACTGGGGGGACCATGGCCGAAGAGAGG AAGGGGCAGACGTGACTGGTGGGACCATGGCCGAAGAGAGG < 41bp 0.664805130047736 0.897299242884265 NA NA prediction 0.464988225673058 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667375 chr19:5667374 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23474 0 0 1 0 3 SAFB chr19:5667364 3'AG 5667364 Downstream 11bp 21664 chr19 5667374 5667374 1 + G T UCEC 5667375 + 5667355 5667395 41 AAGGGGCAGACGTGACTGGGGGGACCATGGCCGAAGAGAGG AAGGGGCAGACGTGACTGGTGGGACCATGGCCGAAGAGAGG < 41bp 0.664805130047736 0.897299242884265 NA NA prediction 0.464988225673058 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5667375 chr19:5667374 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23474 0 0 1 0 3 SAFB chr19:5667461 5'GT 5667461 Upstream 88bp 21665 chr5 128351731 128351731 1 + G T KIRC 128351732 + 128351712 128351752 41 ATCTTTCATGAACTACACTGGGAGAATTGGAGCAATTGGGA ATCTTTCATGAACTACACTTGGAGAATTGGAGCAATTGGGA < 41bp 0.65368574922766 0.886175665985727 NA NA prediction 0.464979833516134 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128351732 chr5:128351731 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23475 0 0 1 0 1 SLC27A6 chr5:128351772 5'GT 128351772 Upstream 42bp 21666 chr3 14518786 14518786 1 + G T LUAD 14518787 + 14518767 14518807 41 CTAAGGAAGGGTTATCGTCGGGAAATCTTCATCGCCTTCGT CTAAGGAAGGGTTATCGTCTGGAAATCTTCATCGCCTTCGT < 41bp 0.392114286929236 0.732478494079304 NA NA prediction 0.464956988158609 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14518787 chr3:14518786 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_23476 0 0 1 0 2 SLC6A6 chr3:14518713 3'AG 14518713 Downstream 74bp 21667 chr3 14518786 14518786 1 + G T LUAD 14518787 + 14518767 14518807 41 CTAAGGAAGGGTTATCGTCGGGAAATCTTCATCGCCTTCGT CTAAGGAAGGGTTATCGTCTGGAAATCTTCATCGCCTTCGT < 41bp 0.392114286929236 0.732478494079304 NA NA prediction 0.464956988158609 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14518787 chr3:14518786 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_23476 0 0 1 0 2 SLC6A6 chr3:14518850 5'GT 14518850 Upstream 65bp 21668 chr7 130023612 130023612 1 + G T LUAD 130023613 + 130023593 130023633 41 GATCGTCACCAACCCTGATGGCTTTGCCTTCACGCACAGCA GATCGTCACCAACCCTGATTGCTTTGCCTTCACGCACAGCA < 41bp 0.378372887838277 0.732466799488531 NA NA prediction 0.464933598977062 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023613 chr7:130023612 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_23479 0 0 0 0 2 CPA1 chr7:130023525 3'AG 130023525 Downstream 88bp 21669 chr7 130023612 130023612 1 + G T LUAD 130023613 + 130023593 130023633 41 GATCGTCACCAACCCTGATGGCTTTGCCTTCACGCACAGCA GATCGTCACCAACCCTGATTGCTTTGCCTTCACGCACAGCA < 41bp 0.378372887838277 0.732466799488531 NA NA prediction 0.464933598977062 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023613 chr7:130023612 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_23479 0 0 0 0 2 CPA1 chr7:130023635 5'GT 130023635 Upstream 24bp 21670 chr7 5262234 5262234 1 + G T UCEC 5262235 + 5262215 5262255 41 TCTCTTTTCCTTCCACAGGGGACCGTGATTAGGGTATTTTC TCTCTTTTCCTTCCACAGGTGACCGTGATTAGGGTATTTTC < 41bp 0.400385897119494 0.732459206283892 NA NA prediction 0.464918412567784 Functional Gain - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5262235 chr7:5262234 nonsynonymous SNV 0.955 1 20 hm7G_associated_SNPs_23480 0 0 1 0 2 WIPI2 chr7:5262233 3'AG 5262233 Downstream 2bp 21671 chr7 5262234 5262234 1 + G T UCEC 5262235 + 5262215 5262255 41 TCTCTTTTCCTTCCACAGGGGACCGTGATTAGGGTATTTTC TCTCTTTTCCTTCCACAGGTGACCGTGATTAGGGTATTTTC < 41bp 0.400385897119494 0.732459206283892 NA NA prediction 0.464918412567784 Functional Gain - WIPI2 ENSG00000157954 CDS Human protein_coding chr7:5262235 chr7:5262234 nonsynonymous SNV 0.955 1 20 hm7G_associated_SNPs_23480 0 0 1 0 2 WIPI2 chr7:5262303 5'GT 5262303 Upstream 70bp 21672 chr20 44521860 44521860 1 + G T LUAD 44521861 + 44521841 44521881 41 ACCCTGGGTGTTTCACAGGGGCTGGCTGTGGGCAATGGACT ACCCTGGGTGTTTCACAGGTGCTGGCTGTGGGCAATGGACT < 41bp 0.662232837216846 0.894657509957893 NA NA prediction 0.464849345482093 Functional Gain - CTSA ENSG00000064601 CDS Human protein_coding chr20:44521861 chr20:44521860 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23483 0 0 1 0 2 CTSA chr20:44521859 3'AG 44521859 Downstream 2bp 21673 chr20 44521860 44521860 1 + G T LUAD 44521861 + 44521841 44521881 41 ACCCTGGGTGTTTCACAGGGGCTGGCTGTGGGCAATGGACT ACCCTGGGTGTTTCACAGGTGCTGGCTGTGGGCAATGGACT < 41bp 0.662232837216846 0.894657509957893 NA NA prediction 0.464849345482093 Functional Gain - CTSA ENSG00000064601 CDS Human protein_coding chr20:44521861 chr20:44521860 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23483 0 0 1 0 2 CTSA chr20:44521950 5'GT 44521950 Upstream 91bp 21674 chr1 228004984 228004984 1 + G T LIHC 228004985 + 228004965 228005005 41 GCCGGCAACCACACCCAGTGGTATGAGGTGAACAGGGTGAT GCCGGCAACCACACCCAGTTGTATGAGGTGAACAGGGTGAT < 41bp 0.6584630511479 0.890880827599496 NA NA prediction 0.464835552903192 Functional Gain - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228004985 chr1:228004984 nonsynonymous SNV 0.956 2 20 hm7G_associated_SNPs_23484 0 0 0 0 1 PRSS38 chr1:228004910 3'AG 228004910 Downstream 75bp 21675 chr19 7619583 7619583 1 + G T LUAD 7619584 + 7619564 7619604 41 CATCCTCATTGTGGGCCTGGGGGACCAGGAGCCTACCCTCG CATCCTCATTGTGGGCCTGTGGGACCAGGAGCCTACCCTCG < 41bp 0.384339354319923 0.732408028013709 NA NA prediction 0.464816056027418 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7619584 chr19:7619583 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_23485 0 0 1 0 1 PNPLA6 chr19:7619609 5'GT 7619609 Upstream 27bp 21676 chr15 77241444 77241444 1 + G T LIHC 77241445 + 77241425 77241465 41 TGATGAAATGGATTTGAATGGTGACAAAAAGCTCTCTGAAG TGATGAAATGGATTTGAATTGTGACAAAAAGCTCTCTGAAG < 41bp 0.445560006113881 0.732407337361224 NA NA prediction 0.464814674722449 Functional Gain - RCN2 ENSG00000117906 CDS Human protein_coding chr15:77241445 chr15:77241444 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_23486 0 0 1 0 1 RCN2 chr15:77241411 3'AG 77241411 Downstream 34bp 21677 chr5 154193517 154193517 1 + G T HNSC 154193518 + 154193498 154193538 41 GGTGGCGGCGGTGAGGGCAGGAAGCGGTGCCCCTCCCAGTC GGTGGCGGCGGTGAGGGCATGAAGCGGTGCCCCTCCCAGTC < 41bp 0.409648035349422 0.732389708676148 NA NA prediction 0.464779417352297 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154193518 chr5:154193517 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23488 0 0 1 0 1 LARP1 chr5:154193447 3'AG 154193447 Downstream 71bp 21678 chr11 82909600 82909600 1 + G T SARC 82909601 + 82909581 82909621 41 AGCAGCTTTCAGAAATAGTGGTACGTGGAGCCAGCATTAAT AGCAGCTTTCAGAAATAGTTGTACGTGGAGCCAGCATTAAT < 41bp 0.406529175555839 0.732388936381481 NA NA prediction 0.464777872762961 Functional Gain - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82909601 chr11:82909600 synonymous SNV . 0 20 hm7G_associated_SNPs_23489 0 0 0 0 3 ANKRD42 chr11:82909521 3'AG 82909521 Downstream 80bp 21679 chr11 82909600 82909600 1 + G T SARC 82909601 + 82909581 82909621 41 AGCAGCTTTCAGAAATAGTGGTACGTGGAGCCAGCATTAAT AGCAGCTTTCAGAAATAGTTGTACGTGGAGCCAGCATTAAT < 41bp 0.406529175555839 0.732388936381481 NA NA prediction 0.464777872762961 Functional Gain - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82909601 chr11:82909600 synonymous SNV . 0 20 hm7G_associated_SNPs_23489 0 0 0 0 3 ANKRD42 chr11:82909600 5'GT 82909600 Upstream 1bp 21680 chr11 82909600 82909600 1 + G T SARC 82909601 + 82909581 82909621 41 AGCAGCTTTCAGAAATAGTGGTACGTGGAGCCAGCATTAAT AGCAGCTTTCAGAAATAGTTGTACGTGGAGCCAGCATTAAT < 41bp 0.406529175555839 0.732388936381481 NA NA prediction 0.464777872762961 Functional Gain - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82909601 chr11:82909600 synonymous SNV . 0 20 hm7G_associated_SNPs_23489 0 0 0 0 3 ANKRD42 chr11:82909684 5'GT 82909684 Upstream 85bp 21681 chr15 101464891 101464891 1 + G T READ 101464892 + 101464872 101464912 41 ACTGGTGTGTGGGGCCGGAGGAGTCAGCTGTGTGTCCAGAA ACTGGTGTGTGGGGCCGGATGAGTCAGCTGTGTGTCCAGAA < 41bp 0.386327377534483 0.732386661041804 NA NA prediction 0.464773322083608 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101464892 chr15:101464891 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_23490 0 0 0 0 1 LRRK1 chr15:101464934 5'GT 101464934 Upstream 44bp 21682 chr10 13174132 13174132 1 + G T UCEC 13174133 + 13174113 13174153 41 AGAAAATTCATGAGGAAAAGGAGCAACTGGCATTGCAGCTG AGAAAATTCATGAGGAAAATGAGCAACTGGCATTGCAGCTG < 41bp 0.65572926388396 0.888102614135179 NA NA prediction 0.464746700502437 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13174133 chr10:13174132 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_23491 0 0 1 0 2 OPTN chr10:13174067 3'AG 13174067 Downstream 66bp 21683 chr10 13174132 13174132 1 + G T UCEC 13174133 + 13174113 13174153 41 AGAAAATTCATGAGGAAAAGGAGCAACTGGCATTGCAGCTG AGAAAATTCATGAGGAAAATGAGCAACTGGCATTGCAGCTG < 41bp 0.65572926388396 0.888102614135179 NA NA prediction 0.464746700502437 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13174133 chr10:13174132 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_23491 0 0 1 0 2 OPTN chr10:13174197 5'GT 13174197 Upstream 66bp 21684 chr5 128368846 128368846 1 + G T LUAD 128368847 + 128368827 128368867 41 AACTATTGAAGCATCAGTTGGTGGAAGATGGATTTAATCCA AACTATTGAAGCATCAGTTTGTGGAAGATGGATTTAATCCA < 41bp 0.620489070211681 0.852854024339181 NA NA prediction 0.464729908254999 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128368847 chr5:128368846 nonsynonymous SNV 0.677 3 20 hm7G_associated_SNPs_23493 0 0 0 0 1 SLC27A6 chr5:128368799 3'AG 128368799 Downstream 48bp 21685 chr19 39759403 39759403 1 + G A PRAD 39759404 + 39759384 39759424 41 TCCTGTCGCCAGGCTCCACGGGGCTCTCCCGGATGCAAGGG TCCTGTCGCCAGGCTCCACAGGGCTCTCCCGGATGCAAGGG < 41bp 0.509962308987332 0.742308784710143 NA NA prediction 0.464692951445622 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39759404 chr19:39759403 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23494 0 0 0 0 2 IFNL2 chr19:39759317 3'AG 39759317 Downstream 87bp 21686 chr19 39759403 39759403 1 + G A PRAD 39759404 + 39759384 39759424 41 TCCTGTCGCCAGGCTCCACGGGGCTCTCCCGGATGCAAGGG TCCTGTCGCCAGGCTCCACAGGGCTCTCCCGGATGCAAGGG < 41bp 0.509962308987332 0.742308784710143 NA NA prediction 0.464692951445622 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39759404 chr19:39759403 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23494 0 0 0 0 2 IFNL2 chr19:39759498 5'GT 39759498 Upstream 96bp 21687 chr22 24584283 24584283 1 + G T BRCA 24584284 + 24584264 24584304 41 TATGTGCTGCTGCGCCGCAGGAAGGGCAACACGTGAGACCC TATGTGCTGCTGCGCCGCATGAAGGGCAACACGTGAGACCC < 41bp 0.65367262800012 0.886016393016124 NA NA prediction 0.464687530032007 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24584284 chr22:24584283 nonsynonymous SNV 0.263 1 20 hm7G_associated_SNPs_23496 0 0 0 0 2 SUSD2 chr22:24584193 3'AG 24584193 Downstream 91bp 21688 chr22 24584283 24584283 1 + G T BRCA 24584284 + 24584264 24584304 41 TATGTGCTGCTGCGCCGCAGGAAGGGCAACACGTGAGACCC TATGTGCTGCTGCGCCGCATGAAGGGCAACACGTGAGACCC < 41bp 0.65367262800012 0.886016393016124 NA NA prediction 0.464687530032007 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24584284 chr22:24584283 nonsynonymous SNV 0.263 1 20 hm7G_associated_SNPs_23496 0 0 0 0 2 SUSD2 chr22:24584295 5'GT 24584295 Upstream 13bp 21689 chrX 105132298 105132298 1 + G T UCEC 105132299 + 105132279 105132319 41 TTCCATAGGATGAGGAAGAGGATCTCAGGACTGAACTCAAC TTCCATAGGATGAGGAAGATGATCTCAGGACTGAACTCAAC < 41bp 0.407634157425387 0.732306087281829 NA NA prediction 0.464612174563658 Functional Gain - NRK ENSG00000123572 CDS Human protein_coding chrX:105132299 chrX:105132298 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_23499 0 0 0 0 1 NRK chrX:105132287 3'AG 105132287 Downstream 12bp 21690 chr17 47588006 47588006 1 + G T KIRP 47588007 + 47587987 47588027 41 CTGTGGTTGTGGGCCTTGTGGCCTACATAGCCTTCAAGAGG CTGTGGTTGTGGGCCTTGTTGCCTACATAGCCTTCAAGAGG < 41bp 0.387252032538736 0.732301798991754 NA NA prediction 0.464603597983507 Functional Gain - NGFR ENSG00000064300 CDS Human protein_coding chr17:47588007 chr17:47588006 synonymous SNV . 0 20 hm7G_associated_SNPs_23500 0 0 0 0 1 NGFR chr17:47588026 5'GT 47588026 Upstream 21bp 21691 chr16 19620305 19620305 1 + G T COAD 19620306 + 19620286 19620326 41 GTTTTTGTAGTTACGTGGAGGCATCCATCCTGAAATGTAAC GTTTTTGTAGTTACGTGGATGCATCCATCCTGAAATGTAAC < 41bp 0.396115997122492 0.732289135774869 NA NA prediction 0.464578271549739 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19620306 chr16:19620305 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23502 0 0 1 0 2 C16orf62 chr16:19620296 3'AG 19620296 Downstream 10bp 21692 chr16 19620305 19620305 1 + G T COAD 19620306 + 19620286 19620326 41 GTTTTTGTAGTTACGTGGAGGCATCCATCCTGAAATGTAAC GTTTTTGTAGTTACGTGGATGCATCCATCCTGAAATGTAAC < 41bp 0.396115997122492 0.732289135774869 NA NA prediction 0.464578271549739 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19620306 chr16:19620305 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23502 0 0 1 0 2 C16orf62 chr16:19620343 5'GT 19620343 Upstream 39bp 21693 chr3 50212555 50212555 1 + G T COAD 50212556 + 50212536 50212576 41 CATGGACCCAGACTCAGGCGGTCAGAGGCCGCGGCAGCAGA CATGGACCCAGACTCAGGCTGTCAGAGGCCGCGGCAGCAGA < 41bp 0.396753413829087 0.732287376624353 NA NA prediction 0.464574753248705 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50212556 chr3:50212555 synonymous SNV . 0 20 hm7G_associated_SNPs_23503 0 0 0 0 2 SEMA3F chr3:50212529 3'AG 50212529 Downstream 27bp 21694 chr3 50212555 50212555 1 + G T COAD 50212556 + 50212536 50212576 41 CATGGACCCAGACTCAGGCGGTCAGAGGCCGCGGCAGCAGA CATGGACCCAGACTCAGGCTGTCAGAGGCCGCGGCAGCAGA < 41bp 0.396753413829087 0.732287376624353 NA NA prediction 0.464574753248705 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50212556 chr3:50212555 synonymous SNV . 0 20 hm7G_associated_SNPs_23503 0 0 0 0 2 SEMA3F chr3:50212621 5'GT 50212621 Upstream 67bp 21695 chr10 49634457 49634457 1 + G T LUAD 49634458 + 49634438 49634478 41 ATTTGTTATCCAAAATGCTGGTAATAGATGCATCTAAAAGG ATTTGTTATCCAAAATGCTTGTAATAGATGCATCTAAAAGG < 41bp 0.411814023717349 0.732278832742962 NA NA prediction 0.464557665485925 Functional Gain - MAPK8 ENSG00000107643 CDS Human protein_coding chr10:49634458 chr10:49634457 synonymous SNV . 0 20 hm7G_associated_SNPs_23507 0 0 0 0 2 MAPK8 chr10:49634423 3'AG 49634423 Downstream 35bp 21696 chr10 49634457 49634457 1 + G T LUAD 49634458 + 49634438 49634478 41 ATTTGTTATCCAAAATGCTGGTAATAGATGCATCTAAAAGG ATTTGTTATCCAAAATGCTTGTAATAGATGCATCTAAAAGG < 41bp 0.411814023717349 0.732278832742962 NA NA prediction 0.464557665485925 Functional Gain - MAPK8 ENSG00000107643 CDS Human protein_coding chr10:49634458 chr10:49634457 synonymous SNV . 0 20 hm7G_associated_SNPs_23507 0 0 0 0 2 MAPK8 chr10:49634547 5'GT 49634547 Upstream 91bp 21697 chr8 87111240 87111240 1 + G T DLBC 87111241 + 87111221 87111261 41 CGGAGCTGTACTTCAACGTGGACCATGGCTACCTGGAGGGC CGGAGCTGTACTTCAACGTTGACCATGGCTACCTGGAGGGC < 41bp 0.652775085951941 0.885048737602073 NA NA prediction 0.464547303300265 Functional Gain - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87111241 chr8:87111240 synonymous SNV . 0 20 hm7G_associated_SNPs_23508 0 0 0 0 1 ATP6V0D2 chr8:87111337 5'GT 87111337 Upstream 98bp 21698 chr20 61944277 61944277 1 + G T UCEC 61944278 + 61944258 61944298 41 CGCCCCTGGGAGAGGGGAAGGCTCACGAGGTGGGCAGGGGT CGCCCCTGGGAGAGGGGAATGCTCACGAGGTGGGCAGGGGT < 41bp 0.652853560370033 0.885120056647025 NA NA prediction 0.464532992553983 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61944278 chr20:61944277 nonsynonymous SNV 0.516 2 20 hm7G_associated_SNPs_23509 0 0 0 0 1 COL20A1 chr20:61944286 5'GT 61944286 Upstream 10bp 21699 chr1 54561960 54561960 1 + G T LIHC 54561961 + 54561941 54561981 41 ATTTTGCTGTTTTTTAGATGGATCACCTACTGGTTGAAAAT ATTTTGCTGTTTTTTAGATTGATCACCTACTGGTTGAAAAT < 41bp 0.627271520704556 0.859532528909104 NA NA prediction 0.464522016409096 Functional Gain - TCEANC2 ENSG00000116205 CDS Human protein_coding chr1:54561961 chr1:54561960 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_23510 0 0 1 0 1 TCEANC2 chr1:54561958 3'AG 54561958 Downstream 3bp 21700 chr12 56487586 56487586 1 + G T LIHC 56487587 + 56487567 56487607 41 TGACCCACTGTGCTCCTCTGGGGGATGCTGGGGCCCAGGCC TGACCCACTGTGCTCCTCTTGGGGATGCTGGGGCCCAGGCC < 41bp 0.380408350953559 0.732257344016489 NA NA prediction 0.464514688032977 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56487587 chr12:56487586 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23511 0 0 0 0 1 ERBB3 chr12:56487680 5'GT 56487680 Upstream 95bp 21701 chr10 94817986 94817986 1 + G T UCEC 94817987 + 94817967 94818007 41 CATATGTTTCTAGGATGAAGGATACTAGCAAAAAGAACAAT CATATGTTTCTAGGATGAATGATACTAGCAAAAAGAACAAT < 41bp 0.610939601686165 0.843196439338717 NA NA prediction 0.464513675305104 Functional Gain - EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94817987 chr10:94817986 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23512 0 0 0 3 1 EXOC6 chr10:94817980 3'AG 94817980 Downstream 7bp 21702 chr7 128445491 128445491 1 + G T GBM 128445492 + 128445472 128445512 41 AGTCTCAGACTTCAGAAATGGATTTCTTAGAGCCTGATCCT AGTCTCAGACTTCAGAAATTGATTTCTTAGAGCCTGATCCT < 41bp 0.381557940460481 0.732253856429631 NA NA prediction 0.464507712859261 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445492 chr7:128445491 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_23513 0 0 1 0 2 CCDC136 chr7:128445413 3'AG 128445413 Downstream 79bp 21703 chr7 128445491 128445491 1 + G T GBM 128445492 + 128445472 128445512 41 AGTCTCAGACTTCAGAAATGGATTTCTTAGAGCCTGATCCT AGTCTCAGACTTCAGAAATTGATTTCTTAGAGCCTGATCCT < 41bp 0.381557940460481 0.732253856429631 NA NA prediction 0.464507712859261 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445492 chr7:128445491 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_23513 0 0 1 0 2 CCDC136 chr7:128445578 5'GT 128445578 Upstream 88bp 21704 chr2 219614020 219614020 1 + G T LUSC 219614021 + 219614001 219614041 41 CTCAAGATGTATGTGCGACGGCCCTATAGCTGCCATGAACT CTCAAGATGTATGTGCGACTGCCCTATAGCTGCCATGAACT < 41bp 0.387886114666577 0.732241784493416 NA NA prediction 0.464483568986833 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219614021 chr2:219614020 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_23514 0 0 1 0 2 TTLL4 chr2:219613976 3'AG 219613976 Downstream 45bp 21705 chr2 219614020 219614020 1 + G T LUSC 219614021 + 219614001 219614041 41 CTCAAGATGTATGTGCGACGGCCCTATAGCTGCCATGAACT CTCAAGATGTATGTGCGACTGCCCTATAGCTGCCATGAACT < 41bp 0.387886114666577 0.732241784493416 NA NA prediction 0.464483568986833 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219614021 chr2:219614020 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_23514 0 0 1 0 2 TTLL4 chr2:219614110 5'GT 219614110 Upstream 91bp 21706 chr16 88873513 88873513 1 + G A rs531159541 88873514 + 88873494 88873534 41 TGCTGCGCCCAGCAGCCCCGGGTCTCCCAGGCCAGCACTGC TGCTGCGCCCAGCAGCCCCAGGTCTCCCAGGCCAGCACTGC < 41bp 0.495319669945685 0.732239341178357 NA NA prediction 0.464478682356714 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88873514 chr16:88873513 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23515 0 0 1 0 2 CDT1 chr16:88873459 3'AG 88873459 Downstream 55bp 21707 chr16 88873513 88873513 1 + G A rs531159541 88873514 + 88873494 88873534 41 TGCTGCGCCCAGCAGCCCCGGGTCTCCCAGGCCAGCACTGC TGCTGCGCCCAGCAGCCCCAGGTCTCCCAGGCCAGCACTGC < 41bp 0.495319669945685 0.732239341178357 NA NA prediction 0.464478682356714 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88873514 chr16:88873513 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23515 0 0 1 0 2 CDT1 chr16:88873611 5'GT 88873611 Upstream 99bp 21708 chrX 155235090 155235090 1 + G T UCEC 155235091 + 155235071 155235111 41 AGAGGAGGAGCGTTATACAGGCCAGTGGAGTGAGTGGAGCC AGAGGAGGAGCGTTATACATGCCAGTGGAGTGAGTGGAGCC < 41bp 0.664296186910801 0.896513391595347 NA NA prediction 0.464434409369092 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155235091 chrX:155235090 nonsynonymous SNV 0.183 1 20 hm7G_associated_SNPs_23516 0 0 0 0 1 IL9R chrX:155235144 5'GT 155235144 Upstream 55bp 21709 chr7 813751 813751 1 + G T LUSC 813752 + 813732 813772 41 CCAATCTGCAGTGGCATGCGGGGAGGACAGCCGCGGCCATC CCAATCTGCAGTGGCATGCTGGGAGGACAGCCGCGGCCATC < 41bp 0.666438433227761 0.898647057536549 NA NA prediction 0.464417248617576 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:813752 chr7:813751 synonymous SNV . 0 20 hm7G_associated_SNPs_23518 0 0 1 0 2 DNAAF5 chr7:813685 3'AG 813685 Downstream 67bp 21710 chr7 813751 813751 1 + G T LUSC 813752 + 813732 813772 41 CCAATCTGCAGTGGCATGCGGGGAGGACAGCCGCGGCCATC CCAATCTGCAGTGGCATGCTGGGAGGACAGCCGCGGCCATC < 41bp 0.666438433227761 0.898647057536549 NA NA prediction 0.464417248617576 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:813752 chr7:813751 synonymous SNV . 0 20 hm7G_associated_SNPs_23518 0 0 1 0 2 DNAAF5 chr7:813835 5'GT 813835 Upstream 85bp 21711 chr12 104107464 104107464 1 + G T LUSC 104107465 + 104107445 104107485 41 ATGGAGGTTGCTCTGCCAAGGCTGACTGTAAGAGAACCACC ATGGAGGTTGCTCTGCCAATGCTGACTGTAAGAGAACCACC < 41bp 0.396718275127505 0.732198979890121 NA NA prediction 0.464397959780242 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104107465 chr12:104107464 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_23519 0 0 0 0 2 STAB2 chr12:104107421 3'AG 104107421 Downstream 44bp 21712 chr12 104107464 104107464 1 + G T LUSC 104107465 + 104107445 104107485 41 ATGGAGGTTGCTCTGCCAAGGCTGACTGTAAGAGAACCACC ATGGAGGTTGCTCTGCCAATGCTGACTGTAAGAGAACCACC < 41bp 0.396718275127505 0.732198979890121 NA NA prediction 0.464397959780242 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104107465 chr12:104107464 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_23519 0 0 0 0 2 STAB2 chr12:104107546 5'GT 104107546 Upstream 83bp 21713 chr2 27373037 27373037 1 + G T LUAD 27373038 + 27373018 27373058 41 CGGGAGCGGAGCCGGGTCAGGACGCTGCGCCAGGCCTTCTT CGGGAGCGGAGCCGGGTCATGACGCTGCGCCAGGCCTTCTT < 41bp 0.656561216481962 0.88874776858882 NA NA prediction 0.464373104213715 Functional Gain - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373038 chr2:27373037 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_23521 0 0 0 0 1 TCF23 chr2:27372991 3'AG 27372991 Downstream 47bp 21714 chr3 113331025 113331025 1 + G T LUSC 113331026 + 113331006 113331046 41 GCACCCAGATATATTATATGGGTCGTTTCAAGATAGGTGAG GCACCCAGATATATTATATTGGTCGTTTCAAGATAGGTGAG < 41bp 0.391201841251257 0.73218305877179 NA NA prediction 0.46436611754358 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113331026 chr3:113331025 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_23522 0 0 0 2 1 SIDT1 chr3:113330933 3'AG 113330933 Downstream 93bp 21715 chr5 173372021 173372021 1 + G T UCEC 173372022 + 173372002 173372042 41 TTCTTGGATGATGGCCGTGGGGATCAGCCTCTTCATAGTGG TTCTTGGATGATGGCCGTGTGGATCAGCCTCTTCATAGTGG < 41bp 0.405426186783804 0.732168933402302 NA NA prediction 0.464337866804603 Functional Gain - CPEB4 ENSG00000113742 CDS Human protein_coding chr5:173372022 chr5:173372021 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23523 0 0 1 0 1 CPEB4 chr5:173371970 3'AG 173371970 Downstream 52bp 21716 chr10 7866336 7866336 1 + G T LUAD 7866337 + 7866317 7866357 41 AAGCTTTCCAGCTGATGGGGGTTAGTCTACATGAACTAGAA AAGCTTTCCAGCTGATGGGTGTTAGTCTACATGAACTAGAA < 41bp 0.401223330887599 0.732154921708186 NA NA prediction 0.464309843416372 Functional Gain - TAF3 ENSG00000165632 CDS Human protein_coding chr10:7866337 chr10:7866336 synonymous SNV . 0 20 hm7G_associated_SNPs_23525 0 0 1 0 1 TAF3 chr10:7866281 3'AG 7866281 Downstream 56bp 21717 chr14 50069156 50069156 1 + G T HNSC 50069157 + 50069137 50069177 41 AAGCCACTGTTCGGTTAAAGGAGCCTCCTGTGGATATCTGT AAGCCACTGTTCGGTTAAATGAGCCTCCTGTGGATATCTGT < 41bp 0.404153052204924 0.732134213750885 NA NA prediction 0.464268427501769 Functional Gain - LRR1 ENSG00000165501 CDS Human protein_coding chr14:50069157 chr14:50069156 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23527 0 0 1 0 2 LRR1 chr14:50069088 3'AG 50069088 Downstream 69bp 21718 chr14 50069156 50069156 1 + G T HNSC 50069157 + 50069137 50069177 41 AAGCCACTGTTCGGTTAAAGGAGCCTCCTGTGGATATCTGT AAGCCACTGTTCGGTTAAATGAGCCTCCTGTGGATATCTGT < 41bp 0.404153052204924 0.732134213750885 NA NA prediction 0.464268427501769 Functional Gain - LRR1 ENSG00000165501 CDS Human protein_coding chr14:50069157 chr14:50069156 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23527 0 0 1 0 2 LRR1 chr14:50069186 5'GT 50069186 Upstream 31bp 21719 chr9 136265601 136265601 1 + G T UCEC 136265602 + 136265582 136265622 41 ACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCTGTG ACCATGGAGCTACATGACATGGTCCTCGATGTCCAGCTGTG < 41bp 0.389068334703388 0.73213308656248 NA NA prediction 0.46426617312496 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136265602 chr9:136265601 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_23528 0 0 0 2 2 STKLD1 chr9:136265541 3'AG 136265541 Downstream 61bp 21720 chr9 136265601 136265601 1 + G T UCEC 136265602 + 136265582 136265622 41 ACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCTGTG ACCATGGAGCTACATGACATGGTCCTCGATGTCCAGCTGTG < 41bp 0.389068334703388 0.73213308656248 NA NA prediction 0.46426617312496 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136265602 chr9:136265601 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_23528 0 0 0 2 2 STKLD1 chr9:136265657 5'GT 136265657 Upstream 57bp 21721 chr4 148985640 148985640 1 + G T UCEC 148985641 + 148985621 148985661 41 GGAATTATCTTTTGAAATAGGAGCAATTTTTGAGGATGGTA GGAATTATCTTTTGAAATATGAGCAATTTTTGAGGATGGTA < 41bp 0.411778187142038 0.732125685557542 NA NA prediction 0.464251371115084 Functional Gain - ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148985641 chr4:148985640 stopgain 0.999 1 20 hm7G_associated_SNPs_23529 0 0 1 0 2 ARHGAP10 chr4:148985567 3'AG 148985567 Downstream 74bp 21722 chr4 148985640 148985640 1 + G T UCEC 148985641 + 148985621 148985661 41 GGAATTATCTTTTGAAATAGGAGCAATTTTTGAGGATGGTA GGAATTATCTTTTGAAATATGAGCAATTTTTGAGGATGGTA < 41bp 0.411778187142038 0.732125685557542 NA NA prediction 0.464251371115084 Functional Gain - ARHGAP10 ENSG00000071205 CDS Human protein_coding chr4:148985641 chr4:148985640 stopgain 0.999 1 20 hm7G_associated_SNPs_23529 0 0 1 0 2 ARHGAP10 chr4:148985658 5'GT 148985658 Upstream 19bp 21723 chr17 40940344 40940344 1 + G T LUAD 40940345 + 40940325 40940365 41 CTTCAGGCCTTAGCGATGTGGGAGAAGGGATGGGACAAATG CTTCAGGCCTTAGCGATGTTGGAGAAGGGATGGGACAAATG < 41bp 0.664711146343178 0.896816445399582 NA NA prediction 0.464210598112808 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940345 chr17:40940344 synonymous SNV . 0 20 hm7G_associated_SNPs_23531 0 0 1 0 1 WNK4 chr17:40940308 3'AG 40940308 Downstream 37bp 21724 chrX 152914752 152914752 1 + G A UCEC 152914753 + 152914733 152914773 41 CAGCCTTGCTGGCCGTGCCGGCTCCAGCATGGCGCCGGTGC CAGCCTTGCTGGCCGTGCCAGCTCCAGCATGGCGCCGGTGC < 41bp 0.506369160925523 0.738461533798529 NA NA prediction 0.46418474574601 Functional Gain - DUSP9 ENSG00000130829 CDS Human protein_coding chrX:152914753 chrX:152914752 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_23535 0 0 1 0 1 DUSP9 chrX:152914687 3'AG 152914687 Downstream 66bp 21725 chr6 132195422 132195422 1 + G T UCEC 132195423 + 132195403 132195443 41 ATTAGGAATCCCTCAGAAAGGAAATATTGTGGAAGTGGATT ATTAGGAATCCCTCAGAAATGAAATATTGTGGAAGTGGATT < 41bp 0.413643723072923 0.732069256615407 NA NA prediction 0.464138513230814 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132195423 chr6:132195422 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_23537 0 0 1 0 2 ENPP1 chr6:132195408 3'AG 132195408 Downstream 15bp 21726 chr6 132195422 132195422 1 + G T UCEC 132195423 + 132195403 132195443 41 ATTAGGAATCCCTCAGAAAGGAAATATTGTGGAAGTGGATT ATTAGGAATCCCTCAGAAATGAAATATTGTGGAAGTGGATT < 41bp 0.413643723072923 0.732069256615407 NA NA prediction 0.464138513230814 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132195423 chr6:132195422 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_23537 0 0 1 0 2 ENPP1 chr6:132195477 5'GT 132195477 Upstream 56bp 21727 chr10 118228808 118228808 1 + G T STAD 118228809 + 118228789 118228829 41 ACATTATTTTTTAAACACAGGGTCCCTTTCCCCATTTGCCC ACATTATTTTTTAAACACATGGTCCCTTTCCCCATTTGCCC < 41bp 0.415102975455303 0.732068182575629 NA NA prediction 0.464136365151258 Functional Gain - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118228809 chr10:118228808 nonsynonymous SNV 0.365 4 20 hm7G_associated_SNPs_23538 0 0 0 0 1 PNLIPRP3 chr10:118228829 5'GT 118228829 Upstream 22bp 21728 chr14 24648302 24648302 1 + G T UCEC 24648303 + 24648283 24648323 41 ATCCCCAGGTCCCGAGGGAGGCCCTGGAGCCCAGTGTTCCC ATCCCCAGGTCCCGAGGGATGCCCTGGAGCCCAGTGTTCCC < 41bp 0.665026820952007 0.897085327195878 NA NA prediction 0.464117012487741 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24648303 chr14:24648302 nonsynonymous SNV 0.957 0 20 hm7G_associated_SNPs_23539 0 0 1 0 2 REC8 chr14:24648291 3'AG 24648291 Downstream 12bp 21729 chr14 24648302 24648302 1 + G T UCEC 24648303 + 24648283 24648323 41 ATCCCCAGGTCCCGAGGGAGGCCCTGGAGCCCAGTGTTCCC ATCCCCAGGTCCCGAGGGATGCCCTGGAGCCCAGTGTTCCC < 41bp 0.665026820952007 0.897085327195878 NA NA prediction 0.464117012487741 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24648303 chr14:24648302 nonsynonymous SNV 0.957 0 20 hm7G_associated_SNPs_23539 0 0 1 0 2 REC8 chr14:24648339 5'GT 24648339 Upstream 38bp 21730 chr19 39998484 39998484 1 + G T READ 39998485 + 39998465 39998505 41 CACAGCTCGTCCGTAGATTGGAATCGCCCTGAAGATGTAGA CACAGCTCGTCCGTAGATTTGAATCGCCCTGAAGATGTAGA < 41bp 0.643913122704882 0.875939209812314 NA NA prediction 0.464052174214862 Functional Gain - DLL3 ENSG00000090932 CDS Human protein_coding chr19:39998485 chr19:39998484 nonsynonymous SNV 0.395 2 20 hm7G_associated_SNPs_23540 0 0 0 0 2 DLL3 chr19:39998470 3'AG 39998470 Downstream 15bp 21731 chr19 39998484 39998484 1 + G T READ 39998485 + 39998465 39998505 41 CACAGCTCGTCCGTAGATTGGAATCGCCCTGAAGATGTAGA CACAGCTCGTCCGTAGATTTGAATCGCCCTGAAGATGTAGA < 41bp 0.643913122704882 0.875939209812314 NA NA prediction 0.464052174214862 Functional Gain - DLL3 ENSG00000090932 CDS Human protein_coding chr19:39998485 chr19:39998484 nonsynonymous SNV 0.395 2 20 hm7G_associated_SNPs_23540 0 0 0 0 2 DLL3 chr19:39998554 5'GT 39998554 Upstream 71bp 21732 chr22 50598172 50598172 1 + G T UCEC 50598173 + 50598153 50598193 41 TAAAGGTTGGATCAGTAGAGGAGTTTCAAGGACAAGAGTAT TAAAGGTTGGATCAGTAGATGAGTTTCAAGGACAAGAGTAT < 41bp 0.403285223055711 0.73202486891017 NA NA prediction 0.464049737820339 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50598173 chr22:50598172 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23541 0 0 0 0 2 MOV10L1 chr22:50598107 3'AG 50598107 Downstream 66bp 21733 chr22 50598172 50598172 1 + G T UCEC 50598173 + 50598153 50598193 41 TAAAGGTTGGATCAGTAGAGGAGTTTCAAGGACAAGAGTAT TAAAGGTTGGATCAGTAGATGAGTTTCAAGGACAAGAGTAT < 41bp 0.403285223055711 0.73202486891017 NA NA prediction 0.464049737820339 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50598173 chr22:50598172 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23541 0 0 0 0 2 MOV10L1 chr22:50598214 5'GT 50598214 Upstream 43bp 21734 chr1 43804977 43804977 1 + G T UCEC 43804978 + 43804958 43804998 41 CAGTATCATCAAGGCCATGGGTGGGAGCCAGCCAGGGGAAC CAGTATCATCAAGGCCATGTGTGGGAGCCAGCCAGGGGAAC < 41bp 0.4005742464103 0.732020869616263 NA NA prediction 0.464041739232526 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43804978 chr1:43804977 nonsynonymous SNV 0.032 1 20 hm7G_associated_SNPs_23542 0 0 0 0 1 MPL chr1:43804942 3'AG 43804942 Downstream 36bp 21735 chr19 16607244 16607244 1 + G T rs375212157 16607245 + 16607225 16607265 41 CTTCAGGCGTGAATGTGGCGGCTGCCTCTGCGAATGGACGG CTTCAGGCGTGAATGTGGCTGCTGCCTCTGCGAATGGACGG < 41bp 0.444227772918951 0.732017558234906 NA NA prediction 0.464035116469813 Functional Gain - C19orf44 ENSG00000105072 UTR5 Human protein_coding chr19:16607245 chr19:16607244 . . 0 20 hm7G_associated_SNPs_23543 0 0 0 0 1 C19orf44 chr19:16607276 5'GT 16607276 Upstream 33bp 21736 chr12 12966355 12966355 1 + G T LUAD 12966356 + 12966336 12966376 41 AAGCGTCCCAGCCGATTGTGGAAGAGGAGGAAACTAAAACA AAGCGTCCCAGCCGATTGTTGAAGAGGAGGAAACTAAAACA < 41bp 0.653122036144319 0.885125567715386 NA NA prediction 0.464007063142134 Functional Gain - DDX47 ENSG00000213782 CDS Human protein_coding chr12:12966356 chr12:12966355 synonymous SNV . 0 20 hm7G_associated_SNPs_23545 0 0 1 0 1 DDX47 chr12:12966388 5'GT 12966388 Upstream 34bp 21737 chr8 1728418 1728418 1 + G T THCA 1728419 + 1728399 1728439 41 GTCTTCTCTCCATGCAGGCGGGCTGGTCCGAGTCTCTGTTT GTCTTCTCTCCATGCAGGCTGGCTGGTCCGAGTCTCTGTTT < 41bp 0.409627898303206 0.73199660603479 NA NA prediction 0.463993212069579 Functional Gain - CLN8 ENSG00000182372 CDS Human protein_coding chr8:1728419 chr8:1728418 synonymous SNV . 0 20 hm7G_associated_SNPs_23546 0 0 1 0 1 CLN8 chr8:1728416 3'AG 1728416 Downstream 3bp 21738 chr6 17421895 17421895 1 + G T LUAD 17421896 + 17421876 17421916 41 GAACTGCGGGGAAGTCAATGGTGTCATTGCAGGTAGGGTCA GAACTGCGGGGAAGTCAATTGTGTCATTGCAGGTAGGGTCA < 41bp 0.397777811787345 0.731985892379696 NA NA prediction 0.463971784759392 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17421896 chr6:17421895 nonsynonymous SNV 0.945 4 20 hm7G_associated_SNPs_23547 0 0 1 1 1 CAP2 chr6:17421907 5'GT 17421907 Upstream 13bp 21739 chr7 27831645 27831645 1 + G T UCEC 27831646 + 27831626 27831666 41 AAGATACTTGTTTTTTAAAGGAGCAACTTCGTAAAGCAGAG AAGATACTTGTTTTTTAAATGAGCAACTTCGTAAAGCAGAG < 41bp 0.409723675420186 0.731979310746711 NA NA prediction 0.463958621493421 Functional Gain - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27831646 chr7:27831645 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23548 0 0 1 0 1 TAX1BP1 chr7:27831625 3'AG 27831625 Downstream 21bp 21740 chr8 104340586 104340586 1 + G T COAD 104340587 + 104340567 104340607 41 CTCTGCTGTCTTCTGGGTTGGAAGCAAAAAGACATGCACAG CTCTGCTGTCTTCTGGGTTTGAAGCAAAAAGACATGCACAG < 41bp 0.646937033735158 0.878910892574798 NA NA prediction 0.46394771767928 Functional Gain - FZD6 ENSG00000164930 CDS Human protein_coding chr8:104340587 chr8:104340586 stopgain 1.000 1 20 hm7G_associated_SNPs_23549 0 0 1 0 1 FZD6 chr8:104340496 3'AG 104340496 Downstream 91bp 21741 chr12 2927376 2927376 1 + G T OV 2927377 + 2927357 2927397 41 ACGAGACACTAATCGGAGAGGAGCAGCGTCCAGTCTTCAAG ACGAGACACTAATCGGAGATGAGCAGCGTCCAGTCTTCAAG < 41bp 0.381272160127765 0.731964213331129 NA NA prediction 0.463928426662258 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2927377 chr12:2927376 nonsynonymous SNV 0.926 0 20 hm7G_associated_SNPs_23550 0 0 1 0 1 ITFG2 chr12:2927443 5'GT 2927443 Upstream 68bp 21742 chr6 131904503 131904503 1 + G T SARC 131904504 + 131904484 131904524 41 CTTCTTAAAAGAAAGAAAAGGCCAATTCATCTAAGTTTTGA CTTCTTAAAAGAAAGAAAATGCCAATTCATCTAAGTTTTGA < 41bp 0.423188265812246 0.73194947695119 NA NA prediction 0.46389895390238 Functional Gain - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131904504 chr6:131904503 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_23551 0 0 0 0 1 ARG1 chr6:131904495 3'AG 131904495 Downstream 9bp 21743 chr1 41450553 41450553 1 + G T UCEC 41450554 + 41450534 41450574 41 GACCTGGGTAACTATGAGCGGTTCCTTGACATCCGCCTCAC GACCTGGGTAACTATGAGCTGTTCCTTGACATCCGCCTCAC < 41bp 0.405917685678988 0.731939715420588 NA NA prediction 0.463879430841176 Functional Gain - CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41450554 chr1:41450553 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_23552 0 0 1 0 1 CTPS1 chr1:41450493 3'AG 41450493 Downstream 61bp 21744 chr4 159158782 159158782 1 + G T LUAD 159158783 + 159158763 159158803 41 ATGATAGTATATATGCAGGGGCAAGCCAATATGGTGAGAAT ATGATAGTATATATGCAGGTGCAAGCCAATATGGTGAGAAT < 41bp 0.639625644790865 0.871559957416832 NA NA prediction 0.463868625251935 Functional Gain - TMEM144 ENSG00000164124 CDS Human protein_coding chr4:159158783 chr4:159158782 synonymous SNV . 0 20 hm7G_associated_SNPs_23553 0 0 1 0 1 TMEM144 chr4:159158795 5'GT 159158795 Upstream 14bp 21745 chr17 38447407 38447407 1 + G T UCEC 38447408 + 38447388 38447428 41 CTCACTCACATACACTTAAGGGACGAAGATTGGTATTTGAC CTCACTCACATACACTTAATGGACGAAGATTGGTATTTGAC < 41bp 0.654443991080703 0.886376489131243 NA NA prediction 0.463864996101081 Functional Gain - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38447408 chr17:38447407 nonsynonymous SNV 0.913 2 20 hm7G_associated_SNPs_23555 0 0 1 0 1 CDC6 chr17:38447310 3'AG 38447310 Downstream 98bp 21746 chr11 85365238 85365238 1 + G T COAD 85365239 + 85365219 85365259 41 GCTGGCTTACCAATGGCAGGGATACCTTTTCTTACAACAGA GCTGGCTTACCAATGGCAGTGATACCTTTTCTTACAACAGA < 41bp 0.396310377830571 0.731919700376929 NA NA prediction 0.463839400753858 Functional Gain - TMEM126A ENSG00000171202 CDS Human protein_coding chr11:85365239 chr11:85365238 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_23556 0 0 0 0 1 TMEM126A chr11:85365300 5'GT 85365300 Upstream 63bp 21747 chr19 44564658 44564658 1 + G T SKCM 44564659 + 44564639 44564679 41 TCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCTTGCCCAG TCTTCACTGAGGAGGAGCTTGGGCTGCTGGACCTTGCCCAG < 41bp 0.667058921582712 0.898952129122408 NA NA prediction 0.463786415079393 Functional Gain - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564659 chr19:44564658 synonymous SNV . 0 20 hm7G_associated_SNPs_23557 0 0 1 0 2 ZNF223 chr19:44564608 3'AG 44564608 Downstream 51bp 21748 chr19 44564658 44564658 1 + G T SKCM 44564659 + 44564639 44564679 41 TCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCTTGCCCAG TCTTCACTGAGGAGGAGCTTGGGCTGCTGGACCTTGCCCAG < 41bp 0.667058921582712 0.898952129122408 NA NA prediction 0.463786415079393 Functional Gain - ZNF223 ENSG00000178386;ENSG00000267022 CDS Human other chr19:44564659 chr19:44564658 synonymous SNV . 0 20 hm7G_associated_SNPs_23557 0 0 1 0 2 ZNF223 chr19:44564734 5'GT 44564734 Upstream 77bp 21749 chr8 120942146 120942146 1 + G T COAD 120942147 + 120942127 120942167 41 CATTGGATAATGAAGTGAAGGCCTTTATGAGAGGACAGAGG CATTGGATAATGAAGTGAATGCCTTTATGAGAGGACAGAGG < 41bp 0.656541473517023 0.888427633569551 NA NA prediction 0.463772320105055 Functional Gain - DEPTOR ENSG00000155792 CDS Human protein_coding chr8:120942147 chr8:120942146 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23559 0 0 0 0 1 DEPTOR chr8:120942178 5'GT 120942178 Upstream 33bp 21750 chr20 44048147 44048147 1 + G T LUSC 44048148 + 44048128 44048168 41 TTTCCATCTCCTCCAGGCAGGCCTCTCTGTGCTGCTGAAGG TTTCCATCTCCTCCAGGCATGCCTCTCTGTGCTGCTGAAGG < 41bp 0.425478120746436 0.731859235041404 NA NA prediction 0.463718470082809 Functional Gain - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048148 chr20:44048147 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_23560 0 0 1 6 2 PIGT chr20:44048113 3'AG 44048113 Downstream 35bp 21751 chr20 44048147 44048147 1 + G T LUSC 44048148 + 44048128 44048168 41 TTTCCATCTCCTCCAGGCAGGCCTCTCTGTGCTGCTGAAGG TTTCCATCTCCTCCAGGCATGCCTCTCTGTGCTGCTGAAGG < 41bp 0.425478120746436 0.731859235041404 NA NA prediction 0.463718470082809 Functional Gain - PIGT ENSG00000124155 CDS Human protein_coding chr20:44048148 chr20:44048147 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_23560 0 0 1 6 2 PIGT chr20:44048144 3'AG 44048144 Downstream 4bp 21752 chr3 52525960 52525960 1 + G T COAD 52525961 + 52525941 52525981 41 CCCAGTGAGGAGGAGATTGGGGACCTGACGTTCACTGTGGC CCCAGTGAGGAGGAGATTGTGGACCTGACGTTCACTGTGGC < 41bp 0.39981880353165 0.731829634504112 NA NA prediction 0.463659269008223 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52525961 chr3:52525960 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23562 0 0 1 1 1 NISCH chr3:52525888 3'AG 52525888 Downstream 73bp 21753 chr11 12248662 12248662 1 + G T UCEC 12248663 + 12248643 12248683 41 CTCAACCTCACATTTCCAAGGAAGAGGACTCCACGGGTAAG CTCAACCTCACATTTCCAATGAAGAGGACTCCACGGGTAAG < 41bp 0.399969342333709 0.731826742137212 NA NA prediction 0.463653484274423 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12248663 chr11:12248662 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23563 0 0 1 0 2 MICAL2 chr11:12248572 3'AG 12248572 Downstream 91bp 21754 chr11 12248662 12248662 1 + G T UCEC 12248663 + 12248643 12248683 41 CTCAACCTCACATTTCCAAGGAAGAGGACTCCACGGGTAAG CTCAACCTCACATTTCCAATGAAGAGGACTCCACGGGTAAG < 41bp 0.399969342333709 0.731826742137212 NA NA prediction 0.463653484274423 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12248663 chr11:12248662 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23563 0 0 1 0 2 MICAL2 chr11:12248678 5'GT 12248678 Upstream 17bp 21755 chr6 41753899 41753899 1 + G T UCEC 41753900 + 41753880 41753920 41 GCGCTGCACCGAGGCGGAGGGACAGCGCTGGCATGAGAACC GCGCTGCACCGAGGCGGAGTGACAGCGCTGGCATGAGAACC < 41bp 0.661882635721189 0.893697295217019 NA NA prediction 0.463629318991659 Functional Gain - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41753900 chr6:41753899 stopgain 0.274 1 20 hm7G_associated_SNPs_23565 0 0 1 0 1 PRICKLE4 chr6:41753866 3'AG 41753866 Downstream 34bp 21756 chr16 81391420 81391420 1 + G T LUSC 81391421 + 81391401 81391441 41 ATTTACTTCCTTAGTTCACGGAAACCCACAGCAGCGATGCG ATTTACTTCCTTAGTTCACTGAAACCCACAGCAGCGATGCG < 41bp 0.638700120527043 0.870505961394617 NA NA prediction 0.463611681735149 Functional Gain - GAN ENSG00000261609 CDS Human protein_coding chr16:81391421 chr16:81391420 nonsynonymous SNV 0.806 0 20 hm7G_associated_SNPs_23566 0 0 0 0 1 GAN chr16:81391415 3'AG 81391415 Downstream 6bp 21757 chr19 7734761 7734761 1 + G A SKCM 7734762 + 7734742 7734782 41 CAGAGCGTCACCTCCAGGGGGGACCTGGCTACTTGCCCCCG CAGAGCGTCACCTCCAGGGAGGACCTGGCTACTTGCCCCCG < 41bp 0.504106438981139 0.735865099534568 NA NA prediction 0.463517321106856 Functional Gain - RETN ENSG00000104918 CDS Human protein_coding chr19:7734762 chr19:7734761 nonsynonymous SNV 0.594 4 20 hm7G_associated_SNPs_23572 0 0 0 0 2 RETN chr19:7734707 3'AG 7734707 Downstream 55bp 21758 chr19 7734761 7734761 1 + G A SKCM 7734762 + 7734742 7734782 41 CAGAGCGTCACCTCCAGGGGGGACCTGGCTACTTGCCCCCG CAGAGCGTCACCTCCAGGGAGGACCTGGCTACTTGCCCCCG < 41bp 0.504106438981139 0.735865099534568 NA NA prediction 0.463517321106856 Functional Gain - RETN ENSG00000104918 CDS Human protein_coding chr19:7734762 chr19:7734761 nonsynonymous SNV 0.594 4 20 hm7G_associated_SNPs_23572 0 0 0 0 2 RETN chr19:7734784 5'GT 7734784 Upstream 24bp 21759 chr12 49298806 49298806 1 + G T LIHC 49298807 + 49298787 49298827 41 AGTGGAGAACTGTCCTTCGGGAAGTCAAGACCAGAGAACTT AGTGGAGAACTGTCCTTCGTGAAGTCAAGACCAGAGAACTT < 41bp 0.63634362479917 0.868093161795031 NA NA prediction 0.463499073991723 Functional Gain - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49298807 chr12:49298806 synonymous SNV . 0 20 hm7G_associated_SNPs_23573 0 0 0 0 2 CCDC65 chr12:49298729 3'AG 49298729 Downstream 78bp 21760 chr12 49298806 49298806 1 + G T LIHC 49298807 + 49298787 49298827 41 AGTGGAGAACTGTCCTTCGGGAAGTCAAGACCAGAGAACTT AGTGGAGAACTGTCCTTCGTGAAGTCAAGACCAGAGAACTT < 41bp 0.63634362479917 0.868093161795031 NA NA prediction 0.463499073991723 Functional Gain - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49298807 chr12:49298806 synonymous SNV . 0 20 hm7G_associated_SNPs_23573 0 0 0 0 2 CCDC65 chr12:49298896 5'GT 49298896 Upstream 91bp 21761 chr1 23111491 23111491 1 + G T BLCA 23111492 + 23111472 23111512 41 GCTCTACTGTAACGGGGACGGCGAGTGGCTGGTGCCCATCG GCTCTACTGTAACGGGGACTGCGAGTGGCTGGTGCCCATCG < 41bp 0.395308218476482 0.731747033371407 NA NA prediction 0.463494066742813 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23111492 chr1:23111491 nonsynonymous SNV 0.911 4 20 hm7G_associated_SNPs_23574 0 0 0 0 1 EPHB2 chr1:23111569 5'GT 23111569 Upstream 79bp 21762 chr11 75480093 75480093 1 + G T LUSC 75480094 + 75480074 75480114 41 GCGGCGAGCGTCAGGCCGAGGCTGACCGGAGCCAGCGCTCT GCGGCGAGCGTCAGGCCGATGCTGACCGGAGCCAGCGCTCT < 41bp 0.656574946501562 0.888321380638793 NA NA prediction 0.463492868274463 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75480094 chr11:75480093 nonsynonymous SNV 0.094 1 20 hm7G_associated_SNPs_23575 0 0 1 0 1 DGAT2 chr11:75480157 5'GT 75480157 Upstream 65bp 21763 chr16 23692295 23692295 1 + G T COAD 23692296 + 23692276 23692316 41 AGGAAGAAGACCCTGTGTGGGACTCCTAATTACATAGCTCC AGGAAGAAGACCCTGTGTGTGACTCCTAATTACATAGCTCC < 41bp 0.38359494528312 0.731746303645681 NA NA prediction 0.463492607291361 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23692296 chr16:23692295 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23576 0 0 1 0 2 PLK1 chr16:23692235 3'AG 23692235 Downstream 61bp 21764 chr16 23692295 23692295 1 + G T COAD 23692296 + 23692276 23692316 41 AGGAAGAAGACCCTGTGTGGGACTCCTAATTACATAGCTCC AGGAAGAAGACCCTGTGTGTGACTCCTAATTACATAGCTCC < 41bp 0.38359494528312 0.731746303645681 NA NA prediction 0.463492607291361 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23692296 chr16:23692295 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23576 0 0 1 0 2 PLK1 chr16:23692379 5'GT 23692379 Upstream 85bp 21765 chr6 132211484 132211484 1 + G T LUAD 132211485 + 132211465 132211505 41 TTTCCTATTCTCCTAGCATGGGAAGCATGACTCCTCATGGG TTTCCTATTCTCCTAGCATTGGAAGCATGACTCCTCATGGG < 41bp 0.424122981528716 0.731742067903302 NA NA prediction 0.463484135806605 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132211485 chr6:132211484 nonsynonymous SNV 0.476 4 20 hm7G_associated_SNPs_23578 0 0 1 0 1 ENPP1 chr6:132211481 3'AG 132211481 Downstream 4bp 21766 chr9 139840153 139840153 1 + G A rs17614 139840154 + 139840134 139840174 41 CTGCAGGAGCAGGGCCACCGGGCCGAGGCCACCACACTGCA CTGCAGGAGCAGGGCCACCAGGCCGAGGCCACCACACTGCA < 41bp 0.51185627730023 0.74359240817497 NA NA prediction 0.463472261749481 Functional Gain - C8G ENSG00000176919 CDS Human protein_coding chr9:139840154 chr9:139840153 nonsynonymous SNV 0.782 0 20 hm7G_associated_SNPs_23580 0 0 1 0 2 C8G chr9:139840086 3'AG 139840086 Downstream 68bp 21767 chr9 139840153 139840153 1 + G A rs17614 139840154 + 139840134 139840174 41 CTGCAGGAGCAGGGCCACCGGGCCGAGGCCACCACACTGCA CTGCAGGAGCAGGGCCACCAGGCCGAGGCCACCACACTGCA < 41bp 0.51185627730023 0.74359240817497 NA NA prediction 0.463472261749481 Functional Gain - C8G ENSG00000176919 CDS Human protein_coding chr9:139840154 chr9:139840153 nonsynonymous SNV 0.782 0 20 hm7G_associated_SNPs_23580 0 0 1 0 2 C8G chr9:139840222 5'GT 139840222 Upstream 70bp 21768 chr4 100540175 100540175 1 + G T LUSC 100540176 + 100540156 100540196 41 AAGCCAATATAGAGGTCCAGGGTGGTCTAGCTATTGATATT AAGCCAATATAGAGGTCCATGGTGGTCTAGCTATTGATATT < 41bp 0.404773269700854 0.731722246308146 NA NA prediction 0.463444492616292 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100540176 chr4:100540175 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_23581 0 0 1 0 2 MTTP chr4:100540131 3'AG 100540131 Downstream 45bp 21769 chr4 100540175 100540175 1 + G T LUSC 100540176 + 100540156 100540196 41 AAGCCAATATAGAGGTCCAGGGTGGTCTAGCTATTGATATT AAGCCAATATAGAGGTCCATGGTGGTCTAGCTATTGATATT < 41bp 0.404773269700854 0.731722246308146 NA NA prediction 0.463444492616292 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100540176 chr4:100540175 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_23581 0 0 1 0 2 MTTP chr4:100540255 5'GT 100540255 Upstream 81bp 21770 chr19 54444787 54444787 1 + G T UCEC 54444788 + 54444768 54444808 41 AACGACGAGGTCATGAACAGGCCCAGCAGCTCTGAGCAGTA AACGACGAGGTCATGAACATGCCCAGCAGCTCTGAGCAGTA < 41bp 0.662492463126391 0.894214685996192 NA NA prediction 0.463444445739603 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54444788 chr19:54444787 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23582 0 0 0 0 2 CACNG7 chr19:54444724 3'AG 54444724 Downstream 64bp 21771 chr19 54444787 54444787 1 + G T UCEC 54444788 + 54444768 54444808 41 AACGACGAGGTCATGAACAGGCCCAGCAGCTCTGAGCAGTA AACGACGAGGTCATGAACATGCCCAGCAGCTCTGAGCAGTA < 41bp 0.662492463126391 0.894214685996192 NA NA prediction 0.463444445739603 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54444788 chr19:54444787 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23582 0 0 0 0 2 CACNG7 chr19:54444869 5'GT 54444869 Upstream 83bp 21772 chr19 6854071 6854071 1 + G T LUAD 6854072 + 6854052 6854092 41 CAAGATCCTTAACAAGAAGGGACAGCAAGGCTGGTGGCGAG CAAGATCCTTAACAAGAAGTGACAGCAAGGCTGGTGGCGAG < 41bp 0.655587414743321 0.887308517113958 NA NA prediction 0.463442204741275 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6854072 chr19:6854071 stopgain 0.987 1 20 hm7G_associated_SNPs_23583 0 0 0 0 1 VAV1 chr19:6854109 5'GT 6854109 Upstream 39bp 21773 chr12 111296531 111296531 1 + G T UCEC 111296532 + 111296512 111296552 41 AAACTAAGGAGGACTATGAGGCATTGATTAAATCCCTGAAA AAACTAAGGAGGACTATGATGCATTGATTAAATCCCTGAAA < 41bp 0.392477246578048 0.731669860656402 NA NA prediction 0.463339721312803 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111296532 chr12:111296531 nonsynonymous SNV 0.929 0 20 hm7G_associated_SNPs_23587 0 0 0 0 1 CCDC63 chr12:111296579 5'GT 111296579 Upstream 49bp 21774 chr17 3385055 3385055 1 + G T UCEC 3385056 + 3385036 3385076 41 CTTATTCTTGAGGATTCCAGGAATAACTTTTTAATTCAGAT CTTATTCTTGAGGATTCCATGAATAACTTTTTAATTCAGAT < 41bp 0.421628121411441 0.731655173276329 NA NA prediction 0.463310346552658 Functional Gain - ASPA ENSG00000108381 CDS Human protein_coding chr17:3385056 chr17:3385055 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_23591 0 0 0 0 1 ASPA chr17:3385092 5'GT 3385092 Upstream 38bp 21775 chr1 221054572 221054572 1 + G T LUAD 221054573 + 221054553 221054593 41 ACCGGTGGGCGGCCCGCCGGGGTGCACCTCTCAGGCCTGCA ACCGGTGGGCGGCCCGCCGTGGTGCACCTCTCAGGCCTGCA < 41bp 0.669999192508697 0.901646262854359 NA NA prediction 0.463294140691325 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221054573 chr1:221054572 nonsynonymous SNV 0.264 4 20 hm7G_associated_SNPs_23592 0 0 0 0 1 HLX chr1:221054536 3'AG 221054536 Downstream 37bp 21776 chr17 34172014 34172014 1 + G T KIRP 34172015 + 34171995 34172035 41 GGGCTACGGAGGAGACCGAGGTGGCTATGGAGGCAAAATGG GGGCTACGGAGGAGACCGATGTGGCTATGGAGGCAAAATGG < 41bp 0.648742014805768 0.880386810217467 NA NA prediction 0.463289590823397 Functional Gain - TAF15 ENSG00000172660 CDS Human other chr17:34172015 chr17:34172014 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23593 0 0 1 0 1 TAF15 chr17:34172042 5'GT 34172042 Upstream 29bp 21777 chrX 150155775 150155775 1 + G T BRCA 150155776 + 150155756 150155796 41 TGAAGGAGAAGTATGAGAAGGTAAGGTGGGGCTGGAAGCCT TGAAGGAGAAGTATGAGAATGTAAGGTGGGGCTGGAAGCCT < 41bp 0.640324276882424 0.87194636084628 NA NA prediction 0.463244167927712 Functional Gain - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150155776 chrX:150155775 nonsynonymous SNV 0.936 3 20 hm7G_associated_SNPs_23599 0 0 1 0 1 HMGB3 chrX:150155775 5'GT 150155775 Upstream 1bp 21778 chr5 137424664 137424664 1 + G T LUAD 137424665 + 137424645 137424685 41 AGCGACAATGTGGAATTTGGGGAAAGGATCTCCAAACTCTT AGCGACAATGTGGAATTTGTGGAAAGGATCTCCAAACTCTT < 41bp 0.657809127932904 0.889429547038301 NA NA prediction 0.463240838210794 Functional Gain - WNT8A ENSG00000061492 CDS Human protein_coding chr5:137424665 chr5:137424664 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_23600 0 0 0 0 2 WNT8A chr5:137424616 3'AG 137424616 Downstream 49bp 21779 chr5 137424664 137424664 1 + G T LUAD 137424665 + 137424645 137424685 41 AGCGACAATGTGGAATTTGGGGAAAGGATCTCCAAACTCTT AGCGACAATGTGGAATTTGTGGAAAGGATCTCCAAACTCTT < 41bp 0.657809127932904 0.889429547038301 NA NA prediction 0.463240838210794 Functional Gain - WNT8A ENSG00000061492 CDS Human protein_coding chr5:137424665 chr5:137424664 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_23600 0 0 0 0 2 WNT8A chr5:137424758 5'GT 137424758 Upstream 95bp 21780 chr1 206653388 206653388 1 + G A OV 206653389 + 206653369 206653409 41 TGTTGGGCGCCGGCTACCAGGCCCTGCGGCTGGCACGGGCC TGTTGGGCGCCGGCTACCAAGCCCTGCGGCTGGCACGGGCC < 41bp 0.528931784491914 0.760533765106567 NA NA prediction 0.463203961229306 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653389 chr1:206653388 synonymous SNV . 0 20 hm7G_associated_SNPs_23601 0 0 0 0 2 IKBKE chr1:206653365 3'AG 206653365 Downstream 24bp 21781 chr1 206653388 206653388 1 + G A OV 206653389 + 206653369 206653409 41 TGTTGGGCGCCGGCTACCAGGCCCTGCGGCTGGCACGGGCC TGTTGGGCGCCGGCTACCAAGCCCTGCGGCTGGCACGGGCC < 41bp 0.528931784491914 0.760533765106567 NA NA prediction 0.463203961229306 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653389 chr1:206653388 synonymous SNV . 0 20 hm7G_associated_SNPs_23601 0 0 0 0 2 IKBKE chr1:206653456 5'GT 206653456 Upstream 69bp 21782 chr11 193728 193728 1 + G T STAD 193729 + 193709 193749 41 CAGGGATGGCCACAGGGGAGGACAACGATGAGTTTTTCATG CAGGGATGGCCACAGGGGATGACAACGATGAGTTTTTCATG < 41bp 0.6569393145107 0.888526247589666 NA NA prediction 0.463173866157931 Functional Gain - SCGB1C1;SCGB1C2 ENSG00000188076 CDS Human protein_coding chr11:193729 chr11:193728 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_23603 0 0 0 0 1 SCGB1C1;SCGB1C2 chr11:193712 3'AG 193712 Downstream 17bp 21783 chr7 99909427 99909427 1 + G T UCEC 99909428 + 99909408 99909448 41 CTTGGCTGCAAAAGGAAGAGGGAGTGTTTGGATGAATCTGA CTTGGCTGCAAAAGGAAGATGGAGTGTTTGGATGAATCTGA < 41bp 0.659704794558357 0.89129049439942 NA NA prediction 0.463171399682126 Functional Gain - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99909428 chr7:99909427 nonsynonymous SNV 0.018 1 20 hm7G_associated_SNPs_23604 0 0 0 0 1 SPDYE3 chr7:99909373 3'AG 99909373 Downstream 55bp 21784 chr1 110018254 110018254 1 + G T UCEC 110018255 + 110018235 110018275 41 CTCCTACAGCGGGGAGACAGGAGCAATGGTTCGCTGCAACA CTCCTACAGCGGGGAGACATGAGCAATGGTTCGCTGCAACA < 41bp 0.662763607043374 0.894344789543654 NA NA prediction 0.46316236500056 Functional Gain - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110018255 chr1:110018254 stopgain 0.992 0 20 hm7G_associated_SNPs_23605 0 0 0 0 2 SYPL2 chr1:110018203 3'AG 110018203 Downstream 52bp 21785 chr1 110018254 110018254 1 + G T UCEC 110018255 + 110018235 110018275 41 CTCCTACAGCGGGGAGACAGGAGCAATGGTTCGCTGCAACA CTCCTACAGCGGGGAGACATGAGCAATGGTTCGCTGCAACA < 41bp 0.662763607043374 0.894344789543654 NA NA prediction 0.46316236500056 Functional Gain - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110018255 chr1:110018254 stopgain 0.992 0 20 hm7G_associated_SNPs_23605 0 0 0 0 2 SYPL2 chr1:110018327 5'GT 110018327 Upstream 74bp 21786 chr19 5739415 5739415 1 + G T UCEC 5739416 + 5739396 5739436 41 ATATTATTCAAATACTGGGGGATTCAGTTTTTGGAAGTATC ATATTATTCAAATACTGGGTGATTCAGTTTTTGGAAGTATC < 41bp 0.404063436744834 0.731573357059324 NA NA prediction 0.463146714118648 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5739416 chr19:5739415 stopgain 0.025 0 20 hm7G_associated_SNPs_23607 0 0 0 0 2 CATSPERD chr19:5739337 3'AG 5739337 Downstream 79bp 21787 chr19 5739415 5739415 1 + G T UCEC 5739416 + 5739396 5739436 41 ATATTATTCAAATACTGGGGGATTCAGTTTTTGGAAGTATC ATATTATTCAAATACTGGGTGATTCAGTTTTTGGAAGTATC < 41bp 0.404063436744834 0.731573357059324 NA NA prediction 0.463146714118648 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5739416 chr19:5739415 stopgain 0.025 0 20 hm7G_associated_SNPs_23607 0 0 0 0 2 CATSPERD chr19:5739450 5'GT 5739450 Upstream 36bp 21788 chr11 63668087 63668087 1 + G T STAD 63668088 + 63668068 63668108 41 TTCCATTCTACATGTCCACGGACTGTGAAAACCTGCTTAAG TTCCATTCTACATGTCCACTGACTGTGAAAACCTGCTTAAG < 41bp 0.387328967137989 0.731572455049281 NA NA prediction 0.463144910098562 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668088 chr11:63668087 synonymous SNV . 0 20 hm7G_associated_SNPs_23608 0 0 1 0 2 MARK2 chr11:63668031 3'AG 63668031 Downstream 57bp 21789 chr11 63668087 63668087 1 + G T STAD 63668088 + 63668068 63668108 41 TTCCATTCTACATGTCCACGGACTGTGAAAACCTGCTTAAG TTCCATTCTACATGTCCACTGACTGTGAAAACCTGCTTAAG < 41bp 0.387328967137989 0.731572455049281 NA NA prediction 0.463144910098562 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63668088 chr11:63668087 synonymous SNV . 0 20 hm7G_associated_SNPs_23608 0 0 1 0 2 MARK2 chr11:63668150 5'GT 63668150 Upstream 64bp 21790 chr6 110059537 110059537 1 + G T LUAD 110059538 + 110059518 110059558 41 TATTTTTCAGGGGTATTTGGGATCTGTAGTGAGCCTTATAT TATTTTTCAGGGGTATTTGTGATCTGTAGTGAGCCTTATAT < 41bp 0.413874547939908 0.731554296432606 NA NA prediction 0.463108592865213 Functional Gain - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110059538 chr6:110059537 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_23610 0 0 1 0 1 FIG4 chr6:110059528 3'AG 110059528 Downstream 10bp 21791 chr20 17446133 17446133 1 + G T LGG 17446134 + 17446114 17446154 41 CAGGTGCCATGGTGAAAATGGCTAAAGACTGGAAAACCGTG CAGGTGCCATGGTGAAAATTGCTAAAGACTGGAAAACCGTG < 41bp 0.662709098906664 0.894259089066716 NA NA prediction 0.463099980320103 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17446134 chr20:17446133 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23611 0 0 0 0 1 PCSK2 chr20:17446198 5'GT 17446198 Upstream 66bp 21792 chrX 100500401 100500401 1 + G T LUAD 100500402 + 100500382 100500422 41 AGGCTCAGACCACATGCTGGGACCATCCCAAGATGACAGAG AGGCTCAGACCACATGCTGTGACCATCCCAAGATGACAGAG < 41bp 0.381225509396499 0.731530164395112 NA NA prediction 0.463060328790224 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100500402 chrX:100500401 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23613 0 0 0 0 2 DRP2 chrX:100500377 3'AG 100500377 Downstream 25bp 21793 chrX 100500401 100500401 1 + G T LUAD 100500402 + 100500382 100500422 41 AGGCTCAGACCACATGCTGGGACCATCCCAAGATGACAGAG AGGCTCAGACCACATGCTGTGACCATCCCAAGATGACAGAG < 41bp 0.381225509396499 0.731530164395112 NA NA prediction 0.463060328790224 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100500402 chrX:100500401 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23613 0 0 0 0 2 DRP2 chrX:100500438 5'GT 100500438 Upstream 38bp 21794 chr13 51504821 51504821 1 + G T LGG 51504822 + 51504802 51504842 41 CTTTTTGTAATCTGCAGGAGGTCTTCTCCATTTTGCCACAC CTTTTTGTAATCTGCAGGATGTCTTCTCCATTTTGCCACAC < 41bp 0.40488504208104 0.731478886580223 NA NA prediction 0.462957773160447 Functional Gain - RNASEH2B ENSG00000136104 CDS Human protein_coding chr13:51504822 chr13:51504821 nonsynonymous SNV 0.932 5 20 hm7G_associated_SNPs_23616 0 0 1 0 2 RNASEH2B chr13:51504819 3'AG 51504819 Downstream 3bp 21795 chr13 51504821 51504821 1 + G T LGG 51504822 + 51504802 51504842 41 CTTTTTGTAATCTGCAGGAGGTCTTCTCCATTTTGCCACAC CTTTTTGTAATCTGCAGGATGTCTTCTCCATTTTGCCACAC < 41bp 0.40488504208104 0.731478886580223 NA NA prediction 0.462957773160447 Functional Gain - RNASEH2B ENSG00000136104 CDS Human protein_coding chr13:51504822 chr13:51504821 nonsynonymous SNV 0.932 5 20 hm7G_associated_SNPs_23616 0 0 1 0 2 RNASEH2B chr13:51504895 5'GT 51504895 Upstream 75bp 21796 chr5 169141440 169141440 1 + G T LUSC 169141441 + 169141421 169141461 41 TAGAAAAGTTGAAGATTGTGGATGGAGAGGAAGTGGTGAAG TAGAAAAGTTGAAGATTGTTGATGGAGAGGAAGTGGTGAAG < 41bp 0.412700495676576 0.731472947343826 NA NA prediction 0.462945894687652 Functional Gain - DOCK2 ENSG00000134516 CDS Human protein_coding chr5:169141441 chr5:169141440 synonymous SNV . 0 20 hm7G_associated_SNPs_23617 0 0 1 1 1 DOCK2 chr5:169141364 3'AG 169141364 Downstream 77bp 21797 chr3 9982636 9982636 1 + G T LGG 9982637 + 9982617 9982657 41 GACTGCCAAGCCGGCTACGGGGGTGAGGCCTGTGGCCAGTG GACTGCCAAGCCGGCTACGTGGGTGAGGCCTGTGGCCAGTG < 41bp 0.669945504159386 0.901392591314172 NA NA prediction 0.462894174309572 Functional Gain - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9982637 chr3:9982636 nonsynonymous SNV 0.976 2 20 hm7G_associated_SNPs_23619 0 0 1 0 1 CRELD1 chr3:9982710 5'GT 9982710 Upstream 75bp 21798 chr9 70999369 70999369 1 + G T UCEC 70999370 + 70999350 70999390 41 AAATCAGCAAAACGATTGAGGAATATGCTATATGTCCTGAT AAATCAGCAAAACGATTGATGAATATGCTATATGTCCTGAT < 41bp 0.409396915947374 0.73144707634522 NA NA prediction 0.46289415269044 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:70999370 chr9:70999369 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_23620 0 0 0 0 2 PGM5 chr9:70999314 3'AG 70999314 Downstream 56bp 21799 chr9 70999369 70999369 1 + G T UCEC 70999370 + 70999350 70999390 41 AAATCAGCAAAACGATTGAGGAATATGCTATATGTCCTGAT AAATCAGCAAAACGATTGATGAATATGCTATATGTCCTGAT < 41bp 0.409396915947374 0.73144707634522 NA NA prediction 0.46289415269044 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:70999370 chr9:70999369 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_23620 0 0 0 0 2 PGM5 chr9:70999460 5'GT 70999460 Upstream 92bp 21800 chr1 76344742 76344742 1 + G T UCEC 76344743 + 76344723 76344763 41 AAGTTTTAGCTCTGCTCGAGGATTTTTCATCCAGATGACTA AAGTTTTAGCTCTGCTCGATGATTTTTCATCCAGATGACTA < 41bp 0.409044958964817 0.731437210598881 NA NA prediction 0.462874421197762 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76344743 chr1:76344742 stopgain 0.996 1 20 hm7G_associated_SNPs_23621 0 0 0 0 2 MSH4 chr1:76344677 3'AG 76344677 Downstream 66bp 21801 chr1 76344742 76344742 1 + G T UCEC 76344743 + 76344723 76344763 41 AAGTTTTAGCTCTGCTCGAGGATTTTTCATCCAGATGACTA AAGTTTTAGCTCTGCTCGATGATTTTTCATCCAGATGACTA < 41bp 0.409044958964817 0.731437210598881 NA NA prediction 0.462874421197762 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76344743 chr1:76344742 stopgain 0.996 1 20 hm7G_associated_SNPs_23621 0 0 0 0 2 MSH4 chr1:76344813 5'GT 76344813 Upstream 72bp 21802 chr17 54543727 54543727 1 + G T LUAD 54543728 + 54543708 54543748 41 TGTTTCCAGAATTTACTTGGGACACACAACTTGGGAAGAGT TGTTTCCAGAATTTACTTGTGACACACAACTTGGGAAGAGT < 41bp 0.412596757139036 0.731417554101326 NA NA prediction 0.462835108202651 Functional Gain - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54543728 chr17:54543727 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23622 0 0 0 0 1 ANKFN1 chr17:54543717 3'AG 54543717 Downstream 11bp 21803 chr4 128688324 128688324 1 + G T COAD 128688325 + 128688305 128688345 41 GGTTTGGTGTTTCAGTACAGGGCATCATTGTGTACCGAGCC GGTTTGGTGTTTCAGTACATGGCATCATTGTGTACCGAGCC < 41bp 0.646883607099913 0.878256340649038 NA NA prediction 0.462745467098251 Functional Gain - SLC25A31 ENSG00000151475 CDS Human protein_coding chr4:128688325 chr4:128688324 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23626 0 0 0 0 1 SLC25A31 chr4:128688375 5'GT 128688375 Upstream 52bp 21804 chr6 155129839 155129839 1 + G T LUAD 155129840 + 155129820 155129860 41 GATATGGATATAGATGAAGGGCAAGATGGAGTGGAAGAGGA GATATGGATATAGATGAAGTGCAAGATGGAGTGGAAGAGGA < 41bp 0.65740864071877 0.888767834426654 NA NA prediction 0.462718387415767 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155129840 chr6:155129839 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_23629 0 0 1 0 2 SCAF8 chr6:155129820 3'AG 155129820 Downstream 20bp 21805 chr6 155129839 155129839 1 + G T LUAD 155129840 + 155129820 155129860 41 GATATGGATATAGATGAAGGGCAAGATGGAGTGGAAGAGGA GATATGGATATAGATGAAGTGCAAGATGGAGTGGAAGAGGA < 41bp 0.65740864071877 0.888767834426654 NA NA prediction 0.462718387415767 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155129840 chr6:155129839 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_23629 0 0 1 0 2 SCAF8 chr6:155129932 5'GT 155129932 Upstream 94bp 21806 chr4 76726330 76726330 1 + G T COAD 76726331 + 76726311 76726351 41 AAGGTTCTTACAGTGAGGGGGCTCAGATGAATGGCATTCAG AAGGTTCTTACAGTGAGGGTGCTCAGATGAATGGCATTCAG < 41bp 0.651770971968167 0.883107312144017 NA NA prediction 0.462672680351699 Functional Gain - USO1 ENSG00000138768 CDS Human protein_coding chr4:76726331 chr4:76726330 synonymous SNV . 0 20 hm7G_associated_SNPs_23631 0 0 1 0 1 USO1 chr4:76726293 3'AG 76726293 Downstream 38bp 21807 chr1 16353221 16353221 1 + G T LUSC 16353222 + 16353202 16353242 41 AGCAAAACGAAATGCTGGTGGCAGCGGCGGCAGTGGGCGTG AGCAAAACGAAATGCTGGTTGCAGCGGCGGCAGTGGGCGTG < 41bp 0.667220103184168 0.898546031439161 NA NA prediction 0.462651856509986 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16353222 chr1:16353221 synonymous SNV . 0 20 hm7G_associated_SNPs_23633 0 0 0 0 2 CLCNKA chr1:16353192 3'AG 16353192 Downstream 30bp 21808 chr1 16353221 16353221 1 + G T LUSC 16353222 + 16353202 16353242 41 AGCAAAACGAAATGCTGGTGGCAGCGGCGGCAGTGGGCGTG AGCAAAACGAAATGCTGGTTGCAGCGGCGGCAGTGGGCGTG < 41bp 0.667220103184168 0.898546031439161 NA NA prediction 0.462651856509986 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16353222 chr1:16353221 synonymous SNV . 0 20 hm7G_associated_SNPs_23633 0 0 0 0 2 CLCNKA chr1:16353270 5'GT 16353270 Upstream 50bp 21809 chrX 155235059 155235059 1 + G T UCEC 155235060 + 155235040 155235080 41 TCCAGATGGCCACACTGGAGGATGATGTGGTAGAGGAGGAG TCCAGATGGCCACACTGGATGATGATGTGGTAGAGGAGGAG < 41bp 0.662513272051823 0.893835686465301 NA NA prediction 0.462644828826957 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155235060 chrX:155235059 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_23634 0 0 1 0 1 IL9R chrX:155235144 5'GT 155235144 Upstream 86bp 21810 chr2 27560091 27560091 1 + G T rs150613047 27560092 + 27560072 27560112 41 TCCTAGAATCAGAAAAAAGGGCGGATGTGCAATCTTCACCT TCCTAGAATCAGAAAAAAGTGCGGATGTGCAATCTTCACCT < 41bp 0.416296787622948 0.731310342972538 NA NA prediction 0.462620685945076 Functional Gain - GTF3C2-AS1 ENSG00000234945 ncRNA_exonic Human antisense chr2:27560092 chr2:27560091 . . 0 20 hm7G_associated_SNPs_23636 0 0 0 0 1 GTF3C2-AS1 chr2:27560078 3'AG 27560078 Downstream 14bp 21811 chr4 5812078 5812078 1 + G T UCEC 5812079 + 5812059 5812099 41 TCTACAGAGAAGCCCCTAAGGACTAAAAGGAAGAAGCCCCT TCTACAGAGAAGCCCCTAATGACTAAAAGGAAGAAGCCCCT < 41bp 0.386608189043088 0.731310284963273 NA NA prediction 0.462620569926546 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5812079 chr4:5812078 nonsynonymous SNV 0.958 3 20 hm7G_associated_SNPs_23637 0 0 1 0 2 EVC chr4:5812066 3'AG 5812066 Downstream 13bp 21812 chr4 5812078 5812078 1 + G T UCEC 5812079 + 5812059 5812099 41 TCTACAGAGAAGCCCCTAAGGACTAAAAGGAAGAAGCCCCT TCTACAGAGAAGCCCCTAATGACTAAAAGGAAGAAGCCCCT < 41bp 0.386608189043088 0.731310284963273 NA NA prediction 0.462620569926546 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5812079 chr4:5812078 nonsynonymous SNV 0.958 3 20 hm7G_associated_SNPs_23637 0 0 1 0 2 EVC chr4:5812177 5'GT 5812177 Upstream 100bp 21813 chrX 103432820 103432820 1 + G T OV 103432821 + 103432801 103432841 41 AAGCACCAGTGGAGTGAGCGGTGCCAGTGCCAGCGCCAGCA AAGCACCAGTGGAGTGAGCTGTGCCAGTGCCAGCGCCAGCA < 41bp 0.649951692969617 0.881250178386767 NA NA prediction 0.462596970834301 Functional Gain - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103432821 chrX:103432820 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23640 0 0 1 0 2 FAM199X chrX:103432721 3'AG 103432721 Downstream 100bp 21814 chrX 103432820 103432820 1 + G T OV 103432821 + 103432801 103432841 41 AAGCACCAGTGGAGTGAGCGGTGCCAGTGCCAGCGCCAGCA AAGCACCAGTGGAGTGAGCTGTGCCAGTGCCAGCGCCAGCA < 41bp 0.649951692969617 0.881250178386767 NA NA prediction 0.462596970834301 Functional Gain - FAM199X ENSG00000123575 CDS Human protein_coding chrX:103432821 chrX:103432820 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23640 0 0 1 0 2 FAM199X chrX:103432858 5'GT 103432858 Upstream 39bp 21815 chr4 99338547 99338547 1 + G T UCEC 99338548 + 99338528 99338568 41 GCAGAAGTTATTTGAAGGAGGAAAAGGTAGTGTATTTCAAA GCAGAAGTTATTTGAAGGATGAAAAGGTAGTGTATTTCAAA < 41bp 0.648662498590401 0.879953281694777 NA NA prediction 0.462581566208752 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99338548 chr4:99338547 stopgain 1.000 1 20 hm7G_associated_SNPs_23641 0 0 1 0 1 RAP1GDS1 chr4:99338518 3'AG 99338518 Downstream 30bp 21816 chr16 129470 129470 1 + G A rs56159544 129471 + 129451 129491 41 CAGCGACCAGCTAGAGCAGGGCAGCCACACAGCTCGTCCGA CAGCGACCAGCTAGAGCAGAGCAGCCACACAGCTCGTCCGA < 41bp 0.506180881452679 0.737457313834272 NA NA prediction 0.462552864763186 Functional Gain - MPG ENSG00000103152 CDS Human protein_coding chr16:129471 chr16:129470 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_23643 0 0 1 0 1 MPG chr16:129424 3'AG 129424 Downstream 47bp 21817 chr1 213445953 213445953 1 + G T LUAD 213445954 + 213445934 213445974 41 ATCCATTTTTTACCCCTGTGGATTGGGCAGAACTGATGAGA ATCCATTTTTTACCCCTGTTGATTGGGCAGAACTGATGAGA < 41bp 0.422162822153545 0.731251749608224 NA NA prediction 0.462503499216449 Functional Gain - RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213445954 chr1:213445953 synonymous SNV . 0 20 hm7G_associated_SNPs_23646 0 0 0 0 1 RPS6KC1 chr1:213445867 3'AG 213445867 Downstream 87bp 21818 chr6 160169354 160169354 1 + G T BRCA 160169355 + 160169335 160169375 41 AACAGACTAAAGACAAACTGGAACAAGCCCAAAATGAACTG AACAGACTAAAGACAAACTTGAACAAGCCCAAAATGAACTG < 41bp 0.44395008607623 0.731244099845472 NA NA prediction 0.462488199690945 Functional Gain - WTAP ENSG00000146457 CDS Human protein_coding chr6:160169355 chr6:160169354 synonymous SNV . 0 20 hm7G_associated_SNPs_23647 0 0 1 1 1 WTAP chr6:160169401 5'GT 160169401 Upstream 48bp 21819 chr16 599044 599044 1 + G A HNSC 599045 + 599025 599065 41 TCCCGGGCCCGAGTCTGTCGGCTTCCCCGCGGGTGACAGCG TCCCGGGCCCGAGTCTGTCAGCTTCCCCGCGGGTGACAGCG < 41bp 0.504201810632056 0.735420579159866 NA NA prediction 0.46243753705562 Functional Gain - CAPN15 ENSG00000103326 CDS Human protein_coding chr16:599045 chr16:599044 nonsynonymous SNV 0.585 3 20 hm7G_associated_SNPs_23648 0 0 1 0 1 CAPN15 chr16:598993 3'AG 598993 Downstream 52bp 21820 chr3 45780352 45780352 1 + G T BLCA 45780353 + 45780333 45780373 41 TTAAGTGTTCCAAGGGACTGGAAATTCCTGGCTGTAAGAAA TTAAGTGTTCCAAGGGACTTGAAATTCCTGGCTGTAAGAAA < 41bp 0.404909831664896 0.731207220533712 NA NA prediction 0.462414441067424 Functional Gain - SACM1L ENSG00000211456 CDS Human protein_coding chr3:45780353 chr3:45780352 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_23649 0 0 1 0 2 SACM1L chr3:45780273 3'AG 45780273 Downstream 80bp 21821 chr3 45780352 45780352 1 + G T BLCA 45780353 + 45780333 45780373 41 TTAAGTGTTCCAAGGGACTGGAAATTCCTGGCTGTAAGAAA TTAAGTGTTCCAAGGGACTTGAAATTCCTGGCTGTAAGAAA < 41bp 0.404909831664896 0.731207220533712 NA NA prediction 0.462414441067424 Functional Gain - SACM1L ENSG00000211456 CDS Human protein_coding chr3:45780353 chr3:45780352 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_23649 0 0 1 0 2 SACM1L chr3:45780365 5'GT 45780365 Upstream 14bp 21822 chr9 141015927 141015927 1 + G T LAML 141015928 + 141015908 141015948 41 CATTTTCATGTAGGGCAGTGGTTCCGTGAATGGGAGCCCCT CATTTTCATGTAGGGCAGTTGTTCCGTGAATGGGAGCCCCT < 41bp 0.420832004114145 0.731183868216161 NA NA prediction 0.462367736432321 Functional Gain - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:141015928 chr9:141015927 nonsynonymous SNV 0.979 5 20 hm7G_associated_SNPs_23651 0 0 0 0 1 CACNA1B chr9:141015921 3'AG 141015921 Downstream 7bp 21823 chr10 26315381 26315381 1 + G T OV 26315382 + 26315362 26315402 41 AATTCATTACTCAAATTGAGGGCAAAGATGTGATGCTACAA AATTCATTACTCAAATTGATGGCAAAGATGTGATGCTACAA < 41bp 0.403028530717649 0.731172754524135 NA NA prediction 0.46234550904827 Functional Gain - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26315382 chr10:26315381 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_23652 0 0 0 0 2 MYO3A chr10:26315306 3'AG 26315306 Downstream 76bp 21824 chr10 26315381 26315381 1 + G T OV 26315382 + 26315362 26315402 41 AATTCATTACTCAAATTGAGGGCAAAGATGTGATGCTACAA AATTCATTACTCAAATTGATGGCAAAGATGTGATGCTACAA < 41bp 0.403028530717649 0.731172754524135 NA NA prediction 0.46234550904827 Functional Gain - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26315382 chr10:26315381 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_23652 0 0 0 0 2 MYO3A chr10:26315461 5'GT 26315461 Upstream 81bp 21825 chr14 103396361 103396361 1 + G T COAD 103396362 + 103396342 103396382 41 GTGGTGCTGGTGGAGAATGGGCCCGAGACAGGCGGAGCGGG GTGGTGCTGGTGGAGAATGTGCCCGAGACAGGCGGAGCGGG < 41bp 0.657860713069422 0.889008269749484 NA NA prediction 0.462295113360125 Functional Gain - AMN ENSG00000166126 CDS Human protein_coding chr14:103396362 chr14:103396361 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_23654 0 0 1 0 1 AMN chr14:103396423 5'GT 103396423 Upstream 63bp 21826 chr19 38817582 38817582 1 + G T LUAD 38817583 + 38817563 38817603 41 GCGACTACGTGCCCGGGGAGGCCCCTGGCCAGCCCTACCGG GCGACTACGTGCCCGGGGATGCCCCTGGCCAGCCCTACCGG < 41bp 0.666041794123715 0.897163121973832 NA NA prediction 0.462242655700234 Functional Gain - KCNK6 ENSG00000099337 CDS Human protein_coding chr19:38817583 chr19:38817582 nonsynonymous SNV 0.020 1 20 hm7G_associated_SNPs_23658 0 0 0 0 1 KCNK6 chr19:38817628 5'GT 38817628 Upstream 47bp 21827 chr2 10008497 10008497 1 + G T UCEC 10008498 + 10008478 10008518 41 CTTTTCTTGAAAGTGGAGCGGAGTCTCAGTCTGACATCCAC CTTTTCTTGAAAGTGGAGCTGAGTCTCAGTCTGACATCCAC < 41bp 0.399409787984269 0.731106771683696 NA NA prediction 0.462213543367392 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10008498 chr2:10008497 synonymous SNV . 0 20 hm7G_associated_SNPs_23660 0 0 1 0 2 TAF1B chr2:10008405 3'AG 10008405 Downstream 93bp 21828 chr2 10008497 10008497 1 + G T UCEC 10008498 + 10008478 10008518 41 CTTTTCTTGAAAGTGGAGCGGAGTCTCAGTCTGACATCCAC CTTTTCTTGAAAGTGGAGCTGAGTCTCAGTCTGACATCCAC < 41bp 0.399409787984269 0.731106771683696 NA NA prediction 0.462213543367392 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10008498 chr2:10008497 synonymous SNV . 0 20 hm7G_associated_SNPs_23660 0 0 1 0 2 TAF1B chr2:10008558 5'GT 10008558 Upstream 62bp 21829 chr18 21042969 21042969 1 + G T LUAD 21042970 + 21042950 21042990 41 ATACAATATCTTGTTCTTTGGCTGATGTAATGAGTGAACAG ATACAATATCTTGTTCTTTTGCTGATGTAATGAGTGAACAG < 41bp 0.650501997946628 0.881603644060522 NA NA prediction 0.462203292227788 Functional Gain - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21042970 chr18:21042969 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_23661 0 0 1 0 1 RIOK3 chr18:21043043 5'GT 21043043 Upstream 75bp 21830 chr4 76997051 76997051 1 + G T THCA 76997052 + 76997032 76997072 41 AGAAGAGAAAAATGAAGACGGGACATTTTGAAATAGTCACC AGAAGAGAAAAATGAAGACTGGACATTTTGAAATAGTCACC < 41bp 0.63831034387757 0.869407924848182 NA NA prediction 0.462195161941224 Functional Gain - ART3 ENSG00000156219 CDS Human protein_coding chr4:76997052 chr4:76997051 synonymous SNV . 0 20 hm7G_associated_SNPs_23662 0 0 0 1 1 ART3 chr4:76997111 5'GT 76997111 Upstream 61bp 21831 chr22 21370308 21370308 1 + G T rs145000335 21370309 + 21370289 21370329 41 ATCATCACCAAACTCAAAGGGGTTTCCGTCACTCAGATCAA ATCATCACCAAACTCAAAGTGGTTTCCGTCACTCAGATCAA < 41bp 0.374437113867418 0.731086989626212 NA NA prediction 0.462173979252423 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21370309 chr22:21370308 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_23663 0 0 0 0 2 P2RX6 chr22:21370231 3'AG 21370231 Downstream 78bp 21832 chr22 21370308 21370308 1 + G T rs145000335 21370309 + 21370289 21370329 41 ATCATCACCAAACTCAAAGGGGTTTCCGTCACTCAGATCAA ATCATCACCAAACTCAAAGTGGTTTCCGTCACTCAGATCAA < 41bp 0.374437113867418 0.731086989626212 NA NA prediction 0.462173979252423 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21370309 chr22:21370308 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_23663 0 0 0 0 2 P2RX6 chr22:21370381 5'GT 21370381 Upstream 74bp 21833 chr1 45101708 45101708 1 + G T UCEC 45101709 + 45101689 45101729 41 CTGCTCTTCACAGAGGGAAGGCTCCTGCATGGCTGAGGATG CTGCTCTTCACAGAGGGAATGCTCCTGCATGGCTGAGGATG < 41bp 0.664011338353204 0.895062317045352 NA NA prediction 0.462101957384295 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45101709 chr1:45101708 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23665 0 0 1 0 1 RNF220 chr1:45101702 3'AG 45101702 Downstream 7bp 21834 chr19 36273517 36273517 1 + G T LUAD 36273518 + 36273498 36273538 41 GGAGGCCATGTCAGTGCCTGGGGAGGAGGAGCGTCTGGTGC GGAGGCCATGTCAGTGCCTTGGGAGGAGGAGCGTCTGGTGC < 41bp 0.376326358362003 0.731045334118857 NA NA prediction 0.462090668237715 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36273518 chr19:36273517 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_23666 0 0 1 0 2 ARHGAP33 chr19:36273419 3'AG 36273419 Downstream 99bp 21835 chr19 36273517 36273517 1 + G T LUAD 36273518 + 36273498 36273538 41 GGAGGCCATGTCAGTGCCTGGGGAGGAGGAGCGTCTGGTGC GGAGGCCATGTCAGTGCCTTGGGAGGAGGAGCGTCTGGTGC < 41bp 0.376326358362003 0.731045334118857 NA NA prediction 0.462090668237715 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36273518 chr19:36273517 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_23666 0 0 1 0 2 ARHGAP33 chr19:36273581 5'GT 36273581 Upstream 65bp 21836 chr19 43922349 43922349 1 + G T LUAD 43922350 + 43922330 43922370 41 GTCGTCTGTGGAGGTCAAAGGCTGTACAGCCATGATTGGCT GTCGTCTGTGGAGGTCAAATGCTGTACAGCCATGATTGGCT < 41bp 0.647131652736175 0.878161725335584 NA NA prediction 0.462060145198819 Functional Gain - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43922350 chr19:43922349 nonsynonymous SNV 0.961 3 20 hm7G_associated_SNPs_23667 0 0 0 0 1 TEX101 chr19:43922320 3'AG 43922320 Downstream 30bp 21837 chr18 77728114 77728114 1 + G T UCEC 77728115 + 77728095 77728135 41 AAATGGGAAATCGCATTGAGGACTTACAGAAGAATGTCAAG AAATGGGAAATCGCATTGATGACTTACAGAAGAATGTCAAG < 41bp 0.652737763333425 0.883765455972277 NA NA prediction 0.462055385277704 Functional Gain - HSBP1L1 ENSG00000226742 CDS Human protein_coding chr18:77728115 chr18:77728114 nonsynonymous SNV 0.952 0 20 hm7G_associated_SNPs_23668 0 0 1 0 1 HSBP1L1 chr18:77728183 5'GT 77728183 Upstream 70bp 21838 chr5 38917658 38917658 1 + G T STAD 38917659 + 38917639 38917679 41 TAATTTCAGCTCCCTCAGAGGCCCCTGATGTCTGGAGAATT TAATTTCAGCTCCCTCAGATGCCCCTGATGTCTGGAGAATT < 41bp 0.392464834177303 0.731027590523814 NA NA prediction 0.462055181047627 Functional Gain - OSMR ENSG00000145623 CDS Human protein_coding chr5:38917659 chr5:38917658 nonsynonymous SNV 0.948 0 20 hm7G_associated_SNPs_23669 0 0 1 0 1 OSMR chr5:38917724 5'GT 38917724 Upstream 67bp 21839 chr2 144008139 144008139 1 + G T UCEC 144008140 + 144008120 144008160 41 CACACATTGAATGGGCCAAGGAAAAATCGAGCAGAAAGAAT CACACATTGAATGGGCCAATGAAAAATCGAGCAGAAAGAAT < 41bp 0.425214204068817 0.731023536063989 NA NA prediction 0.462047072127977 Functional Gain - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144008140 chr2:144008139 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_23670 0 0 0 0 2 ARHGAP15 chr2:144008080 3'AG 144008080 Downstream 60bp 21840 chr2 144008139 144008139 1 + G T UCEC 144008140 + 144008120 144008160 41 CACACATTGAATGGGCCAAGGAAAAATCGAGCAGAAAGAAT CACACATTGAATGGGCCAATGAAAAATCGAGCAGAAAGAAT < 41bp 0.425214204068817 0.731023536063989 NA NA prediction 0.462047072127977 Functional Gain - ARHGAP15 ENSG00000075884 CDS Human protein_coding chr2:144008140 chr2:144008139 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_23670 0 0 0 0 2 ARHGAP15 chr2:144008169 5'GT 144008169 Upstream 31bp 21841 chr12 66638320 66638320 1 + G T OV 66638321 + 66638301 66638341 41 AACTAACTGATTTTGCCATGGCACACTTCCGGTCCCACCTA AACTAACTGATTTTGCCATTGCACACTTCCGGTCCCACCTA < 41bp 0.39474196651127 0.731012834174047 NA NA prediction 0.462025668348095 Functional Gain - IRAK3 ENSG00000090376 CDS Human protein_coding chr12:66638321 chr12:66638320 nonsynonymous SNV 0.958 1 20 hm7G_associated_SNPs_23671 0 0 0 0 1 IRAK3 chr12:66638266 3'AG 66638266 Downstream 55bp 21842 chrX 70618511 70618511 1 + G T UCEC 70618512 + 70618492 70618532 41 CAACTGAGGCGGCTTAAGAGGAACCAGGAAAAGGAGAAGCT CAACTGAGGCGGCTTAAGATGAACCAGGAAAAGGAGAAGCT < 41bp 0.652758317778685 0.883770395164431 NA NA prediction 0.462024154771491 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70618512 chrX:70618511 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_23672 0 0 1 0 2 TAF1 chrX:70618422 3'AG 70618422 Downstream 90bp 21843 chrX 70618511 70618511 1 + G T UCEC 70618512 + 70618492 70618532 41 CAACTGAGGCGGCTTAAGAGGAACCAGGAAAAGGAGAAGCT CAACTGAGGCGGCTTAAGATGAACCAGGAAAAGGAGAAGCT < 41bp 0.652758317778685 0.883770395164431 NA NA prediction 0.462024154771491 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70618512 chrX:70618511 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_23672 0 0 1 0 2 TAF1 chrX:70618587 5'GT 70618587 Upstream 77bp 21844 chr5 10461353 10461353 1 + G T LUAD 10461354 + 10461334 10461374 41 CACGGACGATCCGGAGGGCGGGCCCGCTCGCATCCCCTTCA CACGGACGATCCGGAGGGCTGGCCCGCTCGCATCCCCTTCA < 41bp 0.667143631860978 0.898135456801067 NA NA prediction 0.461983649880179 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461354 chr5:10461353 nonsynonymous SNV 0.727 4 20 hm7G_associated_SNPs_23674 0 0 0 0 1 ROPN1L chr5:10461296 3'AG 10461296 Downstream 58bp 21845 chr10 95372912 95372912 1 + G T OV 95372913 + 95372893 95372933 41 ATTGGACATTGGGATAGTGGGTTGGGCTGCTCACACGAAGA ATTGGACATTGGGATAGTGTGTTGGGCTGCTCACACGAAGA < 41bp 0.416365151763725 0.730973203341937 NA NA prediction 0.461946406683874 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95372913 chr10:95372912 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_23677 0 0 0 0 1 PDE6C chr10:95372962 5'GT 95372962 Upstream 51bp 21846 chr6 133836501 133836501 1 + G T ACC 133836502 + 133836482 133836522 41 GATGCCTGGCTACAGTTAAGGGCAGAGATTGAAGGTCTGAC GATGCCTGGCTACAGTTAATGGCAGAGATTGAAGGTCTGAC < 41bp 0.409957518235197 0.730968888768361 NA NA prediction 0.461937777536722 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133836502 chr6:133836501 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_23678 0 0 1 0 2 EYA4 chr6:133836459 3'AG 133836459 Downstream 43bp 21847 chr6 133836501 133836501 1 + G T ACC 133836502 + 133836482 133836522 41 GATGCCTGGCTACAGTTAAGGGCAGAGATTGAAGGTCTGAC GATGCCTGGCTACAGTTAATGGCAGAGATTGAAGGTCTGAC < 41bp 0.409957518235197 0.730968888768361 NA NA prediction 0.461937777536722 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133836502 chr6:133836501 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_23678 0 0 1 0 2 EYA4 chr6:133836573 5'GT 133836573 Upstream 73bp 21848 chr3 5216089 5216089 1 + G T UCEC 5216090 + 5216070 5216110 41 CAATTTCTTGCAAAGAAAAGGATAATATAGGTAAGAAATGA CAATTTCTTGCAAAGAAAATGATAATATAGGTAAGAAATGA < 41bp 0.628128743423829 0.859028845903583 NA NA prediction 0.461800204959508 Functional Gain - ARL8B ENSG00000134108 CDS Human protein_coding chr3:5216090 chr3:5216089 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23680 0 0 1 0 2 ARL8B chr3:5216029 3'AG 5216029 Downstream 61bp 21849 chr3 5216089 5216089 1 + G T UCEC 5216090 + 5216070 5216110 41 CAATTTCTTGCAAAGAAAAGGATAATATAGGTAAGAAATGA CAATTTCTTGCAAAGAAAATGATAATATAGGTAAGAAATGA < 41bp 0.628128743423829 0.859028845903583 NA NA prediction 0.461800204959508 Functional Gain - ARL8B ENSG00000134108 CDS Human protein_coding chr3:5216090 chr3:5216089 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23680 0 0 1 0 2 ARL8B chr3:5216099 5'GT 5216099 Upstream 11bp 21850 chr8 19688027 19688027 1 + G T UCEC 19688028 + 19688008 19688048 41 AAAGCTTTAAATTGGCCAGGGAGAGCTGGGAGTTGCTCTAT AAAGCTTTAAATTGGCCAGTGAGAGCTGGGAGTTGCTCTAT < 41bp 0.656962388953636 0.887861792791219 NA NA prediction 0.461798807675164 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19688028 chr8:19688027 nonsynonymous SNV 0.821 2 20 hm7G_associated_SNPs_23681 0 0 1 0 1 INTS10 chr8:19688070 5'GT 19688070 Upstream 44bp 21851 chr17 48560768 48560768 1 + G T BRCA 48560769 + 48560749 48560789 41 AGGCTCGGATCCAGACACTGGAGCCTGACAACTGGATGAAG AGGCTCGGATCCAGACACTTGAGCCTGACAACTGGATGAAG < 41bp 0.380149262571454 0.730886755904836 NA NA prediction 0.461773511809673 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560769 chr17:48560768 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_23683 0 0 1 4 2 RSAD1 chr17:48560701 3'AG 48560701 Downstream 68bp 21852 chr17 48560768 48560768 1 + G T BRCA 48560769 + 48560749 48560789 41 AGGCTCGGATCCAGACACTGGAGCCTGACAACTGGATGAAG AGGCTCGGATCCAGACACTTGAGCCTGACAACTGGATGAAG < 41bp 0.380149262571454 0.730886755904836 NA NA prediction 0.461773511809673 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560769 chr17:48560768 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_23683 0 0 1 4 2 RSAD1 chr17:48560848 5'GT 48560848 Upstream 81bp 21853 chr7 30915135 30915135 1 + G T COAD 30915136 + 30915116 30915156 41 GTCAATCTGCTCCTGACTGGGAAAGCTGTGTCCAACGTTTT GTCAATCTGCTCCTGACTGTGAAAGCTGTGTCCAACGTTTT < 41bp 0.611122274758515 0.841992198673068 NA NA prediction 0.461739847829107 Functional Gain - MINDY4 ENSG00000106125;ENSG00000250424 CDS Human other chr7:30915136 chr7:30915135 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_23685 0 0 0 0 1 MINDY4 chr7:30915110 3'AG 30915110 Downstream 26bp 21854 chr6 33380184 33380184 1 + G T THCA 33380185 + 33380165 33380205 41 CTGATGGGCTGCTATACTTGGGTACCATCAAAAAGGTAAGA CTGATGGGCTGCTATACTTTGGTACCATCAAAAAGGTAAGA < 41bp 0.411350106606126 0.730860870054008 NA NA prediction 0.461721740108016 Functional Gain - PHF1 ENSG00000112511 CDS Human protein_coding chr6:33380185 chr6:33380184 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23688 0 0 0 0 1 PHF1 chr6:33380199 5'GT 33380199 Upstream 16bp 21855 chr2 27276808 27276808 1 + G T ESCA 27276809 + 27276789 27276829 41 CCTTTGTTCATCGTTTCGTGGAGGGCCGTGGGGCCACCACC CCTTTGTTCATCGTTTCGTTGAGGGCCGTGGGGCCACCACC < 41bp 0.661170980877453 0.892005906706973 NA NA prediction 0.46166985165904 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27276809 chr2:27276808 synonymous SNV . 0 20 hm7G_associated_SNPs_23695 0 0 1 0 1 AGBL5 chr2:27276764 3'AG 27276764 Downstream 45bp 21856 chr1 76254888 76254888 1 + G T UCEC 76254889 + 76254869 76254909 41 GAATGAGTGGCATCTATTGGGGTCTGACAGTAATGGATCTC GAATGAGTGGCATCTATTGTGGTCTGACAGTAATGGATCTC < 41bp 0.648160441616429 0.878989522702586 NA NA prediction 0.461658162172313 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76254889 chr1:76254888 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23696 0 0 1 0 1 RABGGTB chr1:76254844 3'AG 76254844 Downstream 45bp 21857 chr17 78210825 78210825 1 + G T UCEC 78210826 + 78210806 78210846 41 AACAGGGGAGACAGCTGAGGGGCTCCCTCCAGTCCGGATCC AACAGGGGAGACAGCTGAGTGGCTCCCTCCAGTCCGGATCC < 41bp 0.369136676729176 0.730782682320748 NA NA prediction 0.461565364641496 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210826 chr17:78210825 nonsynonymous SNV 0.820 5 20 hm7G_associated_SNPs_23698 0 0 1 0 2 SLC26A11 chr17:78210727 3'AG 78210727 Downstream 99bp 21858 chr17 78210825 78210825 1 + G T UCEC 78210826 + 78210806 78210846 41 AACAGGGGAGACAGCTGAGGGGCTCCCTCCAGTCCGGATCC AACAGGGGAGACAGCTGAGTGGCTCCCTCCAGTCCGGATCC < 41bp 0.369136676729176 0.730782682320748 NA NA prediction 0.461565364641496 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210826 chr17:78210825 nonsynonymous SNV 0.820 5 20 hm7G_associated_SNPs_23698 0 0 1 0 2 SLC26A11 chr17:78210902 5'GT 78210902 Upstream 78bp 21859 chr15 75108801 75108801 1 + G A KIRC 75108802 + 75108782 75108822 41 CCGGGGCAGGGGCCATGTAGGCTCTGTCCTTGGGGGGCTGG CCGGGGCAGGGGCCATGTAAGCTCTGTCCTTGGGGGGCTGG < 41bp 0.521214968402316 0.75198698680025 NA NA prediction 0.461544036795867 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75108802 chr15:75108801 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_23701 0 0 0 0 2 LMAN1L chr15:75108768 3'AG 75108768 Downstream 34bp 21860 chr15 75108801 75108801 1 + G A KIRC 75108802 + 75108782 75108822 41 CCGGGGCAGGGGCCATGTAGGCTCTGTCCTTGGGGGGCTGG CCGGGGCAGGGGCCATGTAAGCTCTGTCCTTGGGGGGCTGG < 41bp 0.521214968402316 0.75198698680025 NA NA prediction 0.461544036795867 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75108802 chr15:75108801 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_23701 0 0 0 0 2 LMAN1L chr15:75108875 5'GT 75108875 Upstream 75bp 21861 chr22 37325801 37325801 1 + G T LUAD 37325802 + 37325782 37325822 41 CCCAGGTTCTCGGCTCTCAGGACGTCCCAGCAAGTGGAGCC CCCAGGTTCTCGGCTCTCATGACGTCCCAGCAAGTGGAGCC < 41bp 0.372886966361791 0.730761550251562 NA NA prediction 0.461523100503123 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37325802 chr22:37325801 stopgain 0.005 0 20 hm7G_associated_SNPs_23702 0 0 0 0 1 CSF2RB chr22:37325849 5'GT 37325849 Upstream 49bp 21862 chr10 103587676 103587676 1 + G T SKCM 103587677 + 103587657 103587697 41 TCTCCACGTGTTCCCTTGGGGCCTCCTCCCGGAGTGCAGGG TCTCCACGTGTTCCCTTGGTGCCTCCTCCCGGAGTGCAGGG < 41bp 0.662385367270563 0.89314088470734 NA NA prediction 0.461511034873554 Functional Gain - KCNIP2 ENSG00000120049 CDS Human antisense chr10:103587677 chr10:103587676 synonymous SNV . 0 20 hm7G_associated_SNPs_23703 0 0 0 0 1 KCNIP2-AS1 chr10:103587617 3'AG 103587617 Downstream 60bp 21863 chr22 46611192 46611192 1 + G T STAD 46611193 + 46611173 46611213 41 CTGCGGGGACAAGGCCTCAGGCTATCATTACGGAGTCCACG CTGCGGGGACAAGGCCTCATGCTATCATTACGGAGTCCACG < 41bp 0.378034101387216 0.730691944249243 NA NA prediction 0.461383888498486 Functional Gain - PPARA ENSG00000186951 CDS Human protein_coding chr22:46611193 chr22:46611192 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_23706 0 0 0 0 1 PPARA chr22:46611230 5'GT 46611230 Upstream 39bp 21864 chr8 124204147 124204147 1 + G T LUAD 124204148 + 124204128 124204168 41 TTTGTGTGCTCCTGGACCAGGGAGGTGTGAAGCTCTTCCAG TTTGTGTGCTCCTGGACCATGGAGGTGTGAAGCTCTTCCAG < 41bp 0.391256109942741 0.730633398293094 NA NA prediction 0.461266796586187 Functional Gain - FAM83A ENSG00000147689 CDS Human protein_coding chr8:124204148 chr8:124204147 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_23710 0 0 1 0 1 FAM83A chr8:124204210 5'GT 124204210 Upstream 64bp 21865 chr14 94578004 94578004 1 + G T LUSC 94578005 + 94577985 94578025 41 GAGGATCTCTTACTCTCTAGGCCACGGAATTAACCCGAGCA GAGGATCTCTTACTCTCTATGCCACGGAATTAACCCGAGCA < 41bp 0.519772253884827 0.750401913757472 NA NA prediction 0.461259319745289 Functional Gain - IFI27 ENSG00000165949 splicing Human protein_coding chr14:94578005 chr14:94578004 . . 0 20 hm7G_associated_SNPs_23711 0 0 0 0 1 IFI27 chr14:94577971 3'AG 94577971 Downstream 34bp 21866 chr16 30594739 30594739 1 - C A UCEC 30594738 - 30594718 30594758 41 GGGATGGGAATGAGGAGAAGGAAAGGCTGAAGAAGTGTCCA GGGATGGGAATGAGGAGAATGAAAGGCTGAAGAAGTGTCCA < 41bp 0.64893317903812 0.879551046724548 NA NA prediction 0.461235735372856 Functional Gain - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594738 chr16:30594739 nonsynonymous SNV 0.150 0 20 hm7G_associated_SNPs_23712 0 0 1 0 1 ZNF785 chr16:30594764 3'AG 30594764 Downstream 26bp 21867 chr5 179004135 179004135 1 + G T COAD 179004136 + 179004116 179004156 41 AGGATCTTGATGGTGGCAAGGAGTAAGTACTGCGTTGTATG AGGATCTTGATGGTGGCAATGAGTAAGTACTGCGTTGTATG < 41bp 0.407182451697623 0.730612430107201 NA NA prediction 0.461224860214402 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179004136 chr5:179004135 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_23714 0 0 0 0 2 RUFY1 chr5:179004076 3'AG 179004076 Downstream 60bp 21868 chr5 179004135 179004135 1 + G T COAD 179004136 + 179004116 179004156 41 AGGATCTTGATGGTGGCAAGGAGTAAGTACTGCGTTGTATG AGGATCTTGATGGTGGCAATGAGTAAGTACTGCGTTGTATG < 41bp 0.407182451697623 0.730612430107201 NA NA prediction 0.461224860214402 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179004136 chr5:179004135 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_23714 0 0 0 0 2 RUFY1 chr5:179004137 5'GT 179004137 Upstream 3bp 21869 chr2 71801342 71801342 1 + G T UCEC 71801343 + 71801323 71801363 41 TGCAGCACAGGCAGGCGGAGGCGGAGGGCGAGGGCTGGGAG TGCAGCACAGGCAGGCGGATGCGGAGGGCGAGGGCTGGGAG < 41bp 0.424448846293857 0.730605112715452 NA NA prediction 0.461210225430904 Functional Gain - DYSF ENSG00000135636 CDS Human protein_coding chr2:71801343 chr2:71801342 nonsynonymous SNV 0.827 5 20 hm7G_associated_SNPs_23717 0 0 0 0 1 DYSF chr2:71801328 3'AG 71801328 Downstream 15bp 21870 chr3 190120151 190120151 1 + G T LIHC 190120152 + 190120132 190120172 41 ACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAATGC ACAAAATGCCGAGGCCTCTTGTGGGAATGCGTCACAAATGC < 41bp 0.405563140039808 0.730601447593678 NA NA prediction 0.461202895187356 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120152 chr3:190120151 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23718 0 0 0 0 2 CLDN16 chr3:190120126 3'AG 190120126 Downstream 26bp 21871 chr3 190120151 190120151 1 + G T LIHC 190120152 + 190120132 190120172 41 ACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAATGC ACAAAATGCCGAGGCCTCTTGTGGGAATGCGTCACAAATGC < 41bp 0.405563140039808 0.730601447593678 NA NA prediction 0.461202895187356 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120152 chr3:190120151 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23718 0 0 0 0 2 CLDN16 chr3:190120228 5'GT 190120228 Upstream 78bp 21872 chr15 91479202 91479202 1 + G T UCEC 91479203 + 91479183 91479223 41 ACGACAAAGCAGAAACAGAGGCATCCAAAGGTAGGGGAATG ACGACAAAGCAGAAACAGATGCATCCAAAGGTAGGGGAATG < 41bp 0.66557086271322 0.89616994351 NA NA prediction 0.46119816159356 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91479203 chr15:91479202 nonsynonymous SNV 0.985 0 20 hm7G_associated_SNPs_23719 0 0 1 0 3 UNC45A chr15:91479155 3'AG 91479155 Downstream 48bp 21873 chr15 91479202 91479202 1 + G T UCEC 91479203 + 91479183 91479223 41 ACGACAAAGCAGAAACAGAGGCATCCAAAGGTAGGGGAATG ACGACAAAGCAGAAACAGATGCATCCAAAGGTAGGGGAATG < 41bp 0.66557086271322 0.89616994351 NA NA prediction 0.46119816159356 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91479203 chr15:91479202 nonsynonymous SNV 0.985 0 20 hm7G_associated_SNPs_23719 0 0 1 0 3 UNC45A chr15:91479176 3'AG 91479176 Downstream 27bp 21874 chr15 91479202 91479202 1 + G T UCEC 91479203 + 91479183 91479223 41 ACGACAAAGCAGAAACAGAGGCATCCAAAGGTAGGGGAATG ACGACAAAGCAGAAACAGATGCATCCAAAGGTAGGGGAATG < 41bp 0.66557086271322 0.89616994351 NA NA prediction 0.46119816159356 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91479203 chr15:91479202 nonsynonymous SNV 0.985 0 20 hm7G_associated_SNPs_23719 0 0 1 0 3 UNC45A chr15:91479212 5'GT 91479212 Upstream 11bp 21875 chr11 89420596 89420596 1 + G T LUAD 89420597 + 89420577 89420617 41 TCCTTCCCCAGAGTTCAGTGGCATGCCCAGGTAAATAAATG TCCTTCCCCAGAGTTCAGTTGCATGCCCAGGTAAATAAATG < 41bp 0.43218742373055 0.730542223719181 NA NA prediction 0.461084447438362 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89420597 chr11:89420596 . . 0 20 hm7G_associated_SNPs_23722 0 0 0 0 2 FOLH1B chr11:89420515 3'AG 89420515 Downstream 82bp 21876 chr11 89420596 89420596 1 + G T LUAD 89420597 + 89420577 89420617 41 TCCTTCCCCAGAGTTCAGTGGCATGCCCAGGTAAATAAATG TCCTTCCCCAGAGTTCAGTTGCATGCCCAGGTAAATAAATG < 41bp 0.43218742373055 0.730542223719181 NA NA prediction 0.461084447438362 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89420597 chr11:89420596 . . 0 20 hm7G_associated_SNPs_23722 0 0 0 0 2 FOLH1B chr11:89420606 5'GT 89420606 Upstream 11bp 21877 chr7 57522291 57522291 1 + G T LUSC 57522292 + 57522272 57522312 41 ACAGAAACCTGGTCTCCCTGGGTGAGGAAAACTTCAATACA ACAGAAACCTGGTCTCCCTTGGTGAGGAAAACTTCAATACA < 41bp 0.419611208138637 0.730539777016809 NA NA prediction 0.461079554033617 Functional Gain - ZNF716 ENSG00000182111 CDS Human protein_coding chr7:57522292 chr7:57522291 synonymous SNV . 0 20 hm7G_associated_SNPs_23723 0 0 0 0 1 ZNF716 chr7:57522292 5'GT 57522292 Upstream 2bp 21878 chr11 64880728 64880728 1 + G T UCEC 64880729 + 64880709 64880749 41 CTGACAGCCCTGTTGGTGGGGCTGGGGATGTCAGCGGGGCT CTGACAGCCCTGTTGGTGGTGCTGGGGATGTCAGCGGGGCT < 41bp 0.664778621075176 0.895316669852265 NA NA prediction 0.461076097554179 Functional Gain - TM7SF2 ENSG00000149809 CDS Human protein_coding chr11:64880729 chr11:64880728 nonsynonymous SNV 0.592 1 20 hm7G_associated_SNPs_23724 0 0 1 0 1 TM7SF2 chr11:64880692 3'AG 64880692 Downstream 37bp 21879 chr8 24359024 24359024 1 + G T LUAD 24359025 + 24359005 24359045 41 CCTGGGAGTGGAGAACAAAGGATACTTTGGTGATGAGCAGC CCTGGGAGTGGAGAACAAATGATACTTTGGTGATGAGCAGC < 41bp 0.65302282653231 0.883557534430037 NA NA prediction 0.461069415795454 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24359025 chr8:24359024 stopgain 0.995 0 20 hm7G_associated_SNPs_23725 0 0 0 0 2 ADAM7 chr8:24358990 3'AG 24358990 Downstream 35bp 21880 chr8 24359024 24359024 1 + G T LUAD 24359025 + 24359005 24359045 41 CCTGGGAGTGGAGAACAAAGGATACTTTGGTGATGAGCAGC CCTGGGAGTGGAGAACAAATGATACTTTGGTGATGAGCAGC < 41bp 0.65302282653231 0.883557534430037 NA NA prediction 0.461069415795454 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24359025 chr8:24359024 stopgain 0.995 0 20 hm7G_associated_SNPs_23725 0 0 0 0 2 ADAM7 chr8:24359089 5'GT 24359089 Upstream 66bp 21881 chr12 113407470 113407470 1 + G T UCEC 113407471 + 113407451 113407491 41 TGGGCCACAATGCCCGCTGGGACCTGCTGGCCAAGGAAGCT TGGGCCACAATGCCCGCTGTGACCTGCTGGCCAAGGAAGCT < 41bp 0.378963079648212 0.730523342096367 NA NA prediction 0.461046684192735 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113407471 chr12:113407470 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23726 0 0 0 0 2 OAS3 chr12:113407413 3'AG 113407413 Downstream 58bp 21882 chr12 113407470 113407470 1 + G T UCEC 113407471 + 113407451 113407491 41 TGGGCCACAATGCCCGCTGGGACCTGCTGGCCAAGGAAGCT TGGGCCACAATGCCCGCTGTGACCTGCTGGCCAAGGAAGCT < 41bp 0.378963079648212 0.730523342096367 NA NA prediction 0.461046684192735 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113407471 chr12:113407470 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23726 0 0 0 0 2 OAS3 chr12:113407560 5'GT 113407560 Upstream 91bp 21883 chr6 44150701 44150701 1 + G T UCEC 44150702 + 44150682 44150722 41 TCTTCAGAGAGTGTGACCAGGACCATTCAGGCACCTTGAAC TCTTCAGAGAGTGTGACCATGACCATTCAGGCACCTTGAAC < 41bp 0.38994691205094 0.730483880653775 NA NA prediction 0.46096776130755 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44150702 chr6:44150701 nonsynonymous SNV 0.877 0 20 hm7G_associated_SNPs_23727 0 0 0 0 2 CAPN11 chr6:44150678 3'AG 44150678 Downstream 24bp 21884 chr6 44150701 44150701 1 + G T UCEC 44150702 + 44150682 44150722 41 TCTTCAGAGAGTGTGACCAGGACCATTCAGGCACCTTGAAC TCTTCAGAGAGTGTGACCATGACCATTCAGGCACCTTGAAC < 41bp 0.38994691205094 0.730483880653775 NA NA prediction 0.46096776130755 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44150702 chr6:44150701 nonsynonymous SNV 0.877 0 20 hm7G_associated_SNPs_23727 0 0 0 0 2 CAPN11 chr6:44150756 5'GT 44150756 Upstream 56bp 21885 chr15 42622792 42622792 1 + G T ESCA 42622793 + 42622773 42622813 41 GCAAATGGCTACTGCAGAAGGACTGATAAAACGATCTAAAG GCAAATGGCTACTGCAGAATGACTGATAAAACGATCTAAAG < 41bp 0.399628106321854 0.730478201325619 NA NA prediction 0.460956402651238 Functional Gain - GANC ENSG00000214013 CDS Human protein_coding chr15:42622793 chr15:42622792 stopgain 1.000 1 20 hm7G_associated_SNPs_23728 0 0 0 0 2 GANC chr15:42622774 3'AG 42622774 Downstream 19bp 21886 chr15 42622792 42622792 1 + G T ESCA 42622793 + 42622773 42622813 41 GCAAATGGCTACTGCAGAAGGACTGATAAAACGATCTAAAG GCAAATGGCTACTGCAGAATGACTGATAAAACGATCTAAAG < 41bp 0.399628106321854 0.730478201325619 NA NA prediction 0.460956402651238 Functional Gain - GANC ENSG00000214013 CDS Human protein_coding chr15:42622793 chr15:42622792 stopgain 1.000 1 20 hm7G_associated_SNPs_23728 0 0 0 0 2 GANC chr15:42622870 5'GT 42622870 Upstream 79bp 21887 chr9 96435963 96435963 1 + G T SARC 96435964 + 96435944 96435984 41 CCTGCCTGCAGACCACGTGGGGAGCTGGCCAGGCCAAGGGG CCTGCCTGCAGACCACGTGTGGAGCTGGCCAGGCCAAGGGG < 41bp 0.670392446361604 0.90085618248397 NA NA prediction 0.460927472244733 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96435964 chr9:96435963 nonsynonymous SNV 0.724 4 20 hm7G_associated_SNPs_23729 0 0 1 0 1 PHF2 chr9:96435867 3'AG 96435867 Downstream 97bp 21888 chr10 90699437 90699437 1 - C A THCA 90699436 - 90699416 90699456 41 GCTGAGCGTGAGATTGTCCGGGACATCAAGGAGAAACTGTG GCTGAGCGTGAGATTGTCCTGGACATCAAGGAGAAACTGTG < 41bp 0.660827811093647 0.891274855943015 NA NA prediction 0.460894089698736 Functional Gain - ACTA2 ENSG00000107796 CDS Human protein_coding chr10:90699436 chr10:90699437 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_23731 0 0 0 0 1 ACTA2 chr10:90699455 3'AG 90699455 Downstream 19bp 21889 chr17 28770866 28770866 1 + G T UCEC 28770867 + 28770847 28770887 41 CTAGATGCCACAGATGGCAGGGGTATATTAAATGCCACCAT CTAGATGCCACAGATGGCATGGGTATATTAAATGCCACCAT < 41bp 0.395822764527733 0.730439770504813 NA NA prediction 0.460879541009625 Functional Gain - CPD ENSG00000108582 CDS Human protein_coding chr17:28770867 chr17:28770866 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_23732 0 0 1 0 1 CPD chr17:28770820 3'AG 28770820 Downstream 47bp 21890 chr19 45316539 45316539 1 + G A SKCM 45316540 + 45316520 45316560 41 ACAGCCGGAACGGGAACCCGGCCCCCAAGATCACGTGGTAT ACAGCCGGAACGGGAACCCAGCCCCCAAGATCACGTGGTAT < 41bp 0.497740815088165 0.730402999894566 NA NA prediction 0.460805999789133 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45316540 chr19:45316539 synonymous SNV . 0 20 hm7G_associated_SNPs_23734 0 0 0 0 2 BCAM chr19:45316507 3'AG 45316507 Downstream 33bp 21891 chr19 45316539 45316539 1 + G A SKCM 45316540 + 45316520 45316560 41 ACAGCCGGAACGGGAACCCGGCCCCCAAGATCACGTGGTAT ACAGCCGGAACGGGAACCCAGCCCCCAAGATCACGTGGTAT < 41bp 0.497740815088165 0.730402999894566 NA NA prediction 0.460805999789133 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45316540 chr19:45316539 synonymous SNV . 0 20 hm7G_associated_SNPs_23734 0 0 0 0 2 BCAM chr19:45316603 5'GT 45316603 Upstream 65bp 21892 chr14 24906320 24906320 1 + G T UCEC 24906321 + 24906301 24906341 41 AGCAGCAGGGGAGAGAAGAGGAAAAAGGTAGTGGTGGCATT AGCAGCAGGGGAGAGAAGATGAAAAAGGTAGTGGTGGCATT < 41bp 0.642325503400475 0.872720992661172 NA NA prediction 0.460790978521394 Functional Gain - KHNYN ENSG00000100441 CDS Human protein_coding chr14:24906321 chr14:24906320 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_23736 0 0 1 0 1 KHNYN chr14:24906242 3'AG 24906242 Downstream 79bp 21893 chr1 28792203 28792203 1 + G T UCEC 28792204 + 28792184 28792224 41 TTCACCTTGCAGGTGGTGAGGATCCAGGAAAGCCAAGCGAT TTCACCTTGCAGGTGGTGATGATCCAGGAAAGCCAAGCGAT < 41bp 0.655287900984289 0.885677963948339 NA NA prediction 0.460780125928099 Functional Gain - PHACTR4 ENSG00000204138 CDS Human protein_coding chr1:28792204 chr1:28792203 nonsynonymous SNV 0.210 0 20 hm7G_associated_SNPs_23737 0 0 0 0 1 PHACTR4 chr1:28792196 3'AG 28792196 Downstream 8bp 21894 chr13 24892982 24892982 1 + G T COAD 24892983 + 24892963 24893003 41 AGGACGTCCTGGCAGCCCGGGGAAGGATGGGACGAGTGGAG AGGACGTCCTGGCAGCCCGTGGAAGGATGGGACGAGTGGAG < 41bp 0.385543583324654 0.730389446381968 NA NA prediction 0.460778892763936 Functional Gain - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24892983 chr13:24892982 nonsynonymous SNV 0.144 5 20 hm7G_associated_SNPs_23738 0 0 0 0 2 C1QTNF9 chr13:24892956 3'AG 24892956 Downstream 27bp 21895 chr13 24892982 24892982 1 + G T COAD 24892983 + 24892963 24893003 41 AGGACGTCCTGGCAGCCCGGGGAAGGATGGGACGAGTGGAG AGGACGTCCTGGCAGCCCGTGGAAGGATGGGACGAGTGGAG < 41bp 0.385543583324654 0.730389446381968 NA NA prediction 0.460778892763936 Functional Gain - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24892983 chr13:24892982 nonsynonymous SNV 0.144 5 20 hm7G_associated_SNPs_23738 0 0 0 0 2 C1QTNF9 chr13:24893018 5'GT 24893018 Upstream 37bp 21896 chr9 135942502 135942502 1 + G T LUAD 135942503 + 135942483 135942523 41 GAAGGTGGGTTGCCCTGTGGGTGATGCCGCCAGGATGGCCC GAAGGTGGGTTGCCCTGTGTGTGATGCCGCCAGGATGGCCC < 41bp 0.388292509763805 0.730385693411442 NA NA prediction 0.460771386822885 Functional Gain - CEL ENSG00000170835 CDS Human protein_coding chr9:135942503 chr9:135942502 nonsynonymous SNV 0.168 0 20 hm7G_associated_SNPs_23739 0 0 1 0 1 CEL chr9:135942475 3'AG 135942475 Downstream 28bp 21897 chr8 11412964 11412964 1 + G T LUSC 11412965 + 11412945 11412985 41 AGGCTGGTCAGGAAACTCGGGTCTGGACAATTCGGCGAAGT AGGCTGGTCAGGAAACTCGTGTCTGGACAATTCGGCGAAGT < 41bp 0.382180767045278 0.730382540882786 NA NA prediction 0.460765081765572 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11412965 chr8:11412964 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_23740 0 0 0 0 1 BLK chr8:11412993 5'GT 11412993 Upstream 30bp 21898 chr14 56757051 56757051 1 + G T KIRC 56757052 + 56757032 56757072 41 TCACTACTAATGGCGTCCTGGTGATGCATCCACGAGGGGGC TCACTACTAATGGCGTCCTTGTGATGCATCCACGAGGGGGC < 41bp 0.388980301553248 0.730371011313823 NA NA prediction 0.460742022627646 Functional Gain - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56757052 chr14:56757051 synonymous SNV . 0 20 hm7G_associated_SNPs_23742 0 0 1 0 1 PELI2 chr14:56756986 3'AG 56756986 Downstream 66bp 21899 chr5 141307810 141307810 1 + G T COAD 141307811 + 141307791 141307831 41 CGGGTAGAACACTGCTCCTGGCACAGTCCCCTGGACCGTTT CGGGTAGAACACTGCTCCTTGCACAGTCCCCTGGACCGTTT < 41bp 0.372523780942303 0.730366598031929 NA NA prediction 0.460733196063859 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141307811 chr5:141307810 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_23743 0 0 1 0 2 KIAA0141 chr5:141307716 3'AG 141307716 Downstream 95bp 21900 chr5 141307810 141307810 1 + G T COAD 141307811 + 141307791 141307831 41 CGGGTAGAACACTGCTCCTGGCACAGTCCCCTGGACCGTTT CGGGTAGAACACTGCTCCTTGCACAGTCCCCTGGACCGTTT < 41bp 0.372523780942303 0.730366598031929 NA NA prediction 0.460733196063859 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141307811 chr5:141307810 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_23743 0 0 1 0 2 KIAA0141 chr5:141307863 5'GT 141307863 Upstream 54bp 21901 chr13 113819381 113819381 1 + G T THCA 113819382 + 113819362 113819402 41 TGCAGACCAGTGTGCCTGCGGGGTGCTGACCTCTGAGAAGC TGCAGACCAGTGTGCCTGCTGGGTGCTGACCTCTGAGAAGC < 41bp 0.389123149571307 0.730363753302525 NA NA prediction 0.46072750660505 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113819382 chr13:113819381 nonsynonymous SNV 0.142 5 20 hm7G_associated_SNPs_23744 0 0 1 0 2 PROZ chr13:113819367 3'AG 113819367 Downstream 15bp 21902 chr13 113819381 113819381 1 + G T THCA 113819382 + 113819362 113819402 41 TGCAGACCAGTGTGCCTGCGGGGTGCTGACCTCTGAGAAGC TGCAGACCAGTGTGCCTGCTGGGTGCTGACCTCTGAGAAGC < 41bp 0.389123149571307 0.730363753302525 NA NA prediction 0.46072750660505 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113819382 chr13:113819381 nonsynonymous SNV 0.142 5 20 hm7G_associated_SNPs_23744 0 0 1 0 2 PROZ chr13:113819434 5'GT 113819434 Upstream 54bp 21903 chrX 71351948 71351948 1 + G T rs369744188 71351949 + 71351929 71351969 41 CTGCAGCTAACTCGGGTCGGGAAAATGCGACAGCGACTGCC CTGCAGCTAACTCGGGTCGTGAAAATGCGACAGCGACTGCC < 41bp 0.399875208273431 0.730346280769446 NA NA prediction 0.460692561538892 Functional Gain - NHSL2 ENSG00000204131 CDS Human protein_coding chrX:71351949 chrX:71351948 synonymous SNV . 0 20 hm7G_associated_SNPs_23745 0 0 0 0 1 NHSL2 chrX:71351929 3'AG 71351929 Downstream 20bp 21904 chr10 96535218 96535218 1 + G T LUSC 96535219 + 96535199 96535239 41 CATGACGCTGCGGAATTTTGGGATGGGGAAGAGGAGCATTG CATGACGCTGCGGAATTTTTGGATGGGGAAGAGGAGCATTG < 41bp 0.66341996194838 0.893757055434792 NA NA prediction 0.460674186972824 Functional Gain - CYP2C19 ENSG00000165841 CDS Human protein_coding chr10:96535219 chr10:96535218 nonsynonymous SNV 0.847 3 20 hm7G_associated_SNPs_23746 0 0 0 0 1 CYP2C19 chr10:96535147 3'AG 96535147 Downstream 72bp 21905 chr4 186231802 186231802 1 + G T LUAD 186231803 + 186231783 186231823 41 TTCAAGGTAAAGAAACTGCGGCAATGAAAGCTGATCTCCTG TTCAAGGTAAAGAAACTGCTGCAATGAAAGCTGATCTCCTG < 41bp 0.660056833271676 0.89038172384787 NA NA prediction 0.460649781152389 Functional Gain - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186231803 chr4:186231802 synonymous SNV . 0 20 hm7G_associated_SNPs_23749 0 0 1 0 1 SNX25 chr4:186231789 3'AG 186231789 Downstream 14bp 21906 chr6 41555090 41555090 1 + G A rs201392271 41555091 + 41555071 41555111 41 GAAGGGCGAGGGTGCCCCCGGGCAGCCTGCCGAGGACAGCG GAAGGGCGAGGGTGCCCCCAGGCAGCCTGCCGAGGACAGCG < 41bp 0.510041098783952 0.740352055041376 NA NA prediction 0.460621912514849 Functional Gain - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41555091 chr6:41555090 nonsynonymous SNV 0.958 0 20 hm7G_associated_SNPs_23752 0 0 0 0 2 FOXP4 chr6:41555037 3'AG 41555037 Downstream 54bp 21907 chr6 41555090 41555090 1 + G A rs201392271 41555091 + 41555071 41555111 41 GAAGGGCGAGGGTGCCCCCGGGCAGCCTGCCGAGGACAGCG GAAGGGCGAGGGTGCCCCCAGGCAGCCTGCCGAGGACAGCG < 41bp 0.510041098783952 0.740352055041376 NA NA prediction 0.460621912514849 Functional Gain - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41555091 chr6:41555090 nonsynonymous SNV 0.958 0 20 hm7G_associated_SNPs_23752 0 0 0 0 2 FOXP4 chr6:41555040 3'AG 41555040 Downstream 51bp 21908 chr1 16354399 16354399 1 + G T UCEC 16354400 + 16354380 16354420 41 CTTCTTTTTTGTGGCGCTGGGGTGAGTGGGTGCCTTGGGCC CTTCTTTTTTGTGGCGCTGTGGTGAGTGGGTGCCTTGGGCC < 41bp 0.662367158043232 0.892666731427999 NA NA prediction 0.460599146769534 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16354400 chr1:16354399 nonsynonymous SNV 0.733 5 20 hm7G_associated_SNPs_23753 0 0 0 0 2 CLCNKA chr1:16354316 3'AG 16354316 Downstream 84bp 21909 chr1 16354399 16354399 1 + G T UCEC 16354400 + 16354380 16354420 41 CTTCTTTTTTGTGGCGCTGGGGTGAGTGGGTGCCTTGGGCC CTTCTTTTTTGTGGCGCTGTGGTGAGTGGGTGCCTTGGGCC < 41bp 0.662367158043232 0.892666731427999 NA NA prediction 0.460599146769534 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16354400 chr1:16354399 nonsynonymous SNV 0.733 5 20 hm7G_associated_SNPs_23753 0 0 0 0 2 CLCNKA chr1:16354400 5'GT 16354400 Upstream 2bp 21910 chr19 48830119 48830119 1 + G T LUAD 48830120 + 48830100 48830140 41 CCATGTCACTCCTCTTGCTGGTGGTCTCAGCCCTTCACATC CCATGTCACTCCTCTTGCTTGTGGTCTCAGCCCTTCACATC < 41bp 0.387663865613294 0.730262124161777 NA NA prediction 0.460524248323554 Functional Gain - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830120 chr19:48830119 synonymous SNV . 0 20 hm7G_associated_SNPs_23759 0 0 1 0 2 EMP3 chr19:48830087 3'AG 48830087 Downstream 33bp 21911 chr19 48830119 48830119 1 + G T LUAD 48830120 + 48830100 48830140 41 CCATGTCACTCCTCTTGCTGGTGGTCTCAGCCCTTCACATC CCATGTCACTCCTCTTGCTTGTGGTCTCAGCCCTTCACATC < 41bp 0.387663865613294 0.730262124161777 NA NA prediction 0.460524248323554 Functional Gain - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48830120 chr19:48830119 synonymous SNV . 0 20 hm7G_associated_SNPs_23759 0 0 1 0 2 EMP3 chr19:48830179 5'GT 48830179 Upstream 61bp 21912 chr22 21988801 21988801 1 + G T LGG 21988802 + 21988782 21988822 41 GGCTCATTGCCACCTGTGAGGGACAAACTCCTGCTGGAGAA GGCTCATTGCCACCTGTGATGGACAAACTCCTGCTGGAGAA < 41bp 0.384169545424339 0.730257228126137 NA NA prediction 0.460514456252275 Functional Gain - CCDC116 ENSG00000161180 CDS Human protein_coding chr22:21988802 chr22:21988801 nonsynonymous SNV 0.759 2 20 hm7G_associated_SNPs_23761 0 0 0 0 1 CCDC116 chr22:21988859 5'GT 21988859 Upstream 59bp 21913 chr12 20709614 20709614 1 + G T CESC 20709615 + 20709595 20709635 41 TCATGGGGCATTCAGAATGGGACCACAAACGAGGGCCAAGA TCATGGGGCATTCAGAATGTGACCACAAACGAGGGCCAAGA < 41bp 0.408647213481133 0.730252256782408 NA NA prediction 0.460504513564815 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20709615 chr12:20709614 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23762 0 0 1 0 2 PDE3A chr12:20709594 3'AG 20709594 Downstream 21bp 21914 chr12 20709614 20709614 1 + G T CESC 20709615 + 20709595 20709635 41 TCATGGGGCATTCAGAATGGGACCACAAACGAGGGCCAAGA TCATGGGGCATTCAGAATGTGACCACAAACGAGGGCCAAGA < 41bp 0.408647213481133 0.730252256782408 NA NA prediction 0.460504513564815 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20709615 chr12:20709614 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23762 0 0 1 0 2 PDE3A chr12:20709644 5'GT 20709644 Upstream 31bp 21915 chr22 19752612 19752612 1 + G T LUSC 19752613 + 19752593 19752633 41 AGGAGACACGATTCACCGCGGTCACTGCCTACCAGAACCAT AGGAGACACGATTCACCGCTGTCACTGCCTACCAGAACCAT < 41bp 0.388241638265336 0.730238417331374 NA NA prediction 0.460476834662749 Functional Gain - TBX1 ENSG00000184058 CDS Human protein_coding chr22:19752613 chr22:19752612 synonymous SNV . 0 20 hm7G_associated_SNPs_23763 0 0 1 0 1 TBX1 chr22:19752636 5'GT 19752636 Upstream 25bp 21916 chr14 76107326 76107326 1 + G T UCEC 76107327 + 76107307 76107347 41 GACTGGCTATCTCCCACTGGGATTTGAGTTTGCTGTGGAGC GACTGGCTATCTCCCACTGTGATTTGAGTTTGCTGTGGAGC < 41bp 0.663954017620654 0.894179472252267 NA NA prediction 0.460450909263225 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107327 chr14:76107326 stopgain 0.960 1 20 hm7G_associated_SNPs_23765 0 0 0 0 2 FLVCR2 chr14:76107298 3'AG 76107298 Downstream 29bp 21917 chr14 76107326 76107326 1 + G T UCEC 76107327 + 76107307 76107347 41 GACTGGCTATCTCCCACTGGGATTTGAGTTTGCTGTGGAGC GACTGGCTATCTCCCACTGTGATTTGAGTTTGCTGTGGAGC < 41bp 0.663954017620654 0.894179472252267 NA NA prediction 0.460450909263225 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107327 chr14:76107326 stopgain 0.960 1 20 hm7G_associated_SNPs_23765 0 0 0 0 2 FLVCR2 chr14:76107403 5'GT 76107403 Upstream 78bp 21918 chr7 780575 780575 1 + G T LGG 780576 + 780556 780596 41 TCAACGACGAGGTGCCTGAGGTCAGGTACGTGGGCAGGCGG TCAACGACGAGGTGCCTGATGTCAGGTACGTGGGCAGGCGG < 41bp 0.382012404617538 0.730216480626693 NA NA prediction 0.460432961253386 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:780576 chr7:780575 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23768 0 0 1 0 1 DNAAF5 chr7:780580 5'GT 780580 Upstream 6bp 21919 chr22 17978493 17978493 1 + G T UCEC 17978494 + 17978474 17978514 41 ATTGGGTGAAGACAATTCTGGGGCACTATATTGGTATTTCT ATTGGGTGAAGACAATTCTTGGGCACTATATTGGTATTTCT < 41bp 0.488407182846763 0.730209515489915 NA NA prediction 0.46041903097983 Functional Gain - CECR2 ENSG00000099954 CDS Human protein_coding chr22:17978494 chr22:17978493 nonsynonymous SNV 0.685 3 20 hm7G_associated_SNPs_23769 0 0 1 0 1 CECR2 chr22:17978581 5'GT 17978581 Upstream 89bp 21920 chr19 33651337 33651337 1 + G T ESCA 33651338 + 33651318 33651358 41 AGGCTCTTTTCTCATTTCTGGAGGGTTTGATAGGACTGTGG AGGCTCTTTTCTCATTTCTTGAGGGTTTGATAGGACTGTGG < 41bp 0.396543583740561 0.73019143248689 NA NA prediction 0.46038286497378 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651338 chr19:33651337 stopgain 0.992 0 20 hm7G_associated_SNPs_23771 0 0 0 0 2 WDR88 chr19:33651320 3'AG 33651320 Downstream 18bp 21921 chr19 33651337 33651337 1 + G T ESCA 33651338 + 33651318 33651358 41 AGGCTCTTTTCTCATTTCTGGAGGGTTTGATAGGACTGTGG AGGCTCTTTTCTCATTTCTTGAGGGTTTGATAGGACTGTGG < 41bp 0.396543583740561 0.73019143248689 NA NA prediction 0.46038286497378 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651338 chr19:33651337 stopgain 0.992 0 20 hm7G_associated_SNPs_23771 0 0 0 0 2 WDR88 chr19:33651402 5'GT 33651402 Upstream 66bp 21922 chr2 27151156 27151156 1 + G T UCEC 27151157 + 27151137 27151177 41 ACTGGATTTGGGGATCACAGGCCCAGAAGGAATCGAGATCA ACTGGATTTGGGGATCACATGCCCAGAAGGAATCGAGATCA < 41bp 0.668960402315277 0.899129411783371 NA NA prediction 0.460338018936188 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27151157 chr2:27151156 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23774 0 0 1 0 1 DPYSL5 chr2:27151191 5'GT 27151191 Upstream 36bp 21923 chr12 57860099 57860099 1 + G T PAAD 57860100 + 57860080 57860120 41 GGCTGCTCCAGGGAGCTGAGGCCCTTCAAAGCCCAGTACAT GGCTGCTCCAGGGAGCTGATGCCCTTCAAAGCCCAGTACAT < 41bp 0.376056989068157 0.730150671199825 NA NA prediction 0.46030134239965 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57860100 chr12:57860099 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23775 0 0 0 0 2 GLI1 chr12:57860023 3'AG 57860023 Downstream 77bp 21924 chr12 57860099 57860099 1 + G T PAAD 57860100 + 57860080 57860120 41 GGCTGCTCCAGGGAGCTGAGGCCCTTCAAAGCCCAGTACAT GGCTGCTCCAGGGAGCTGATGCCCTTCAAAGCCCAGTACAT < 41bp 0.376056989068157 0.730150671199825 NA NA prediction 0.46030134239965 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57860100 chr12:57860099 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23775 0 0 0 0 2 GLI1 chr12:57860172 5'GT 57860172 Upstream 74bp 21925 chr11 117064585 117064585 1 + G T LUAD 117064586 + 117064566 117064606 41 CAGCTCCGGAGTGGGGAGAGGATCAAGCTCATCCCCCTGCT CAGCTCCGGAGTGGGGAGATGATCAAGCTCATCCCCCTGCT < 41bp 0.665953020785079 0.896093365853006 NA NA prediction 0.460280690135856 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117064586 chr11:117064585 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_23776 0 0 0 0 2 SIDT2 chr11:117064569 3'AG 117064569 Downstream 17bp 21926 chr11 117064585 117064585 1 + G T LUAD 117064586 + 117064566 117064606 41 CAGCTCCGGAGTGGGGAGAGGATCAAGCTCATCCCCCTGCT CAGCTCCGGAGTGGGGAGATGATCAAGCTCATCCCCCTGCT < 41bp 0.665953020785079 0.896093365853006 NA NA prediction 0.460280690135856 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117064586 chr11:117064585 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_23776 0 0 0 0 2 SIDT2 chr11:117064679 5'GT 117064679 Upstream 95bp 21927 chr9 103323744 103323744 1 + G T LIHC 103323745 + 103323725 103323765 41 TTGCCCTGAAAACCTCAATGGTTACTGCATCCATGGAAAAT TTGCCCTGAAAACCTCAATTGTTACTGCATCCATGGAAAAT < 41bp 0.41052766566921 0.730134599829302 NA NA prediction 0.460269199658604 Functional Gain - MSANTD3-TMEFF1;TMEFF1 ENSG00000241697;ENSG00000251349 CDS Human other chr9:103323745 chr9:103323744 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23777 0 0 1 0 2 MSANTD3-TMEFF1;TMEFF1 chr9:103323679 3'AG 103323679 Downstream 66bp 21928 chr9 103323744 103323744 1 + G T LIHC 103323745 + 103323725 103323765 41 TTGCCCTGAAAACCTCAATGGTTACTGCATCCATGGAAAAT TTGCCCTGAAAACCTCAATTGTTACTGCATCCATGGAAAAT < 41bp 0.41052766566921 0.730134599829302 NA NA prediction 0.460269199658604 Functional Gain - MSANTD3-TMEFF1;TMEFF1 ENSG00000241697;ENSG00000251349 CDS Human other chr9:103323745 chr9:103323744 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_23777 0 0 1 0 2 MSANTD3-TMEFF1;TMEFF1 chr9:103323802 5'GT 103323802 Upstream 59bp 21929 chr5 35806907 35806907 1 + G T LUAD 35806908 + 35806888 35806928 41 AAGACGACACGGAGAAAAGGGAACAGAAGGATGAAGAAATC AAGACGACACGGAGAAAAGTGAACAGAAGGATGAAGAAATC < 41bp 0.416090791905863 0.730131738835892 NA NA prediction 0.460263477671784 Functional Gain - SPEF2 ENSG00000152582 CDS Human protein_coding chr5:35806908 chr5:35806907 nonsynonymous SNV 0.064 0 20 hm7G_associated_SNPs_23779 0 0 0 0 1 SPEF2 chr5:35806809 3'AG 35806809 Downstream 99bp 21930 chr1 155254967 155254967 1 + G T UCEC 155254968 + 155254948 155254988 41 CCCTCCAGTACAAGCAGGTGGAGCAGTACATGTCCTTCCAC CCCTCCAGTACAAGCAGGTTGAGCAGTACATGTCCTTCCAC < 41bp 0.379994474507456 0.730130128237463 NA NA prediction 0.460260256474926 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155254968 chr1:155254967 synonymous SNV . 0 20 hm7G_associated_SNPs_23780 0 0 0 0 1 HCN3 chr1:155254956 3'AG 155254956 Downstream 12bp 21931 chr7 11078447 11078447 1 + G T UCEC 11078448 + 11078428 11078468 41 ACTTCGAAGTGAAGGACAAGGAATATGGGCTTTACTAGGCA ACTTCGAAGTGAAGGACAATGAATATGGGCTTTACTAGGCA < 41bp 0.406227018590197 0.730111536495182 NA NA prediction 0.460223072990363 Functional Gain - PHF14 ENSG00000106443 CDS Human protein_coding chr7:11078448 chr7:11078447 stopgain 1.000 0 20 hm7G_associated_SNPs_23781 0 0 1 0 2 PHF14 chr7:11078387 3'AG 11078387 Downstream 61bp 21932 chr7 11078447 11078447 1 + G T UCEC 11078448 + 11078428 11078468 41 ACTTCGAAGTGAAGGACAAGGAATATGGGCTTTACTAGGCA ACTTCGAAGTGAAGGACAATGAATATGGGCTTTACTAGGCA < 41bp 0.406227018590197 0.730111536495182 NA NA prediction 0.460223072990363 Functional Gain - PHF14 ENSG00000106443 CDS Human protein_coding chr7:11078448 chr7:11078447 stopgain 1.000 0 20 hm7G_associated_SNPs_23781 0 0 1 0 2 PHF14 chr7:11078482 5'GT 11078482 Upstream 36bp 21933 chr19 54418758 54418758 1 + G T LUAD 54418759 + 54418739 54418779 41 GCATCTTCTTCATACTATCGGGTGAGCCTAAGGACTTGGGG GCATCTTCTTCATACTATCTGGTGAGCCTAAGGACTTGGGG < 41bp 0.659588066512668 0.889685706361264 NA NA prediction 0.460195279697192 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54418759 chr19:54418758 synonymous SNV . 0 20 hm7G_associated_SNPs_23782 0 0 0 0 1 CACNG7 chr19:54418759 5'GT 54418759 Upstream 2bp 21934 chrX 134706945 134706945 1 + G T GBM 134706946 + 134706926 134706966 41 TTTGCTGGCTTCCAAATTGGGCTCTTAAACAAGGTAAATTG TTTGCTGGCTTCCAAATTGTGCTCTTAAACAAGGTAAATTG < 41bp 0.420637198455653 0.730091669810335 NA NA prediction 0.46018333962067 Functional Gain - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134706946 chrX:134706945 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_23783 0 0 0 0 1 INTS6L chrX:134706958 5'GT 134706958 Upstream 14bp 21935 chr13 113819419 113819419 1 + G T UCEC 113819420 + 113819400 113819440 41 AGCGTGCACCGGATCTACAGGACCTCCCGTGGCAGGTAACA AGCGTGCACCGGATCTACATGACCTCCCGTGGCAGGTAACA < 41bp 0.388874336868596 0.730086784272356 NA NA prediction 0.460173568544712 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113819420 chr13:113819419 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_23784 0 0 1 0 2 PROZ chr13:113819367 3'AG 113819367 Downstream 53bp 21936 chr13 113819419 113819419 1 + G T UCEC 113819420 + 113819400 113819440 41 AGCGTGCACCGGATCTACAGGACCTCCCGTGGCAGGTAACA AGCGTGCACCGGATCTACATGACCTCCCGTGGCAGGTAACA < 41bp 0.388874336868596 0.730086784272356 NA NA prediction 0.460173568544712 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113819420 chr13:113819419 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_23784 0 0 1 0 2 PROZ chr13:113819434 5'GT 113819434 Upstream 16bp 21937 chr19 49703625 49703625 1 + G T ESCA 49703626 + 49703606 49703646 41 TTCATGGTTTTCACGGTGCGGCTGCTTCACATCTTCACGGT TTCATGGTTTTCACGGTGCTGCTGCTTCACATCTTCACGGT < 41bp 0.38456317950738 0.730082844682153 NA NA prediction 0.460165689364307 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49703626 chr19:49703625 nonsynonymous SNV 0.965 4 20 hm7G_associated_SNPs_23785 0 0 0 0 2 TRPM4 chr19:49703557 3'AG 49703557 Downstream 69bp 21938 chr19 49703625 49703625 1 + G T ESCA 49703626 + 49703606 49703646 41 TTCATGGTTTTCACGGTGCGGCTGCTTCACATCTTCACGGT TTCATGGTTTTCACGGTGCTGCTGCTTCACATCTTCACGGT < 41bp 0.38456317950738 0.730082844682153 NA NA prediction 0.460165689364307 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49703626 chr19:49703625 nonsynonymous SNV 0.965 4 20 hm7G_associated_SNPs_23785 0 0 0 0 2 TRPM4 chr19:49703689 5'GT 49703689 Upstream 65bp 21939 chr8 91940518 91940518 1 + G T STAD 91940519 + 91940499 91940539 41 AGAAATTAATTGATAGACTGGAAAAGAAGGTAGGTGCTTTC AGAAATTAATTGATAGACTTGAAAAGAAGGTAGGTGCTTTC < 41bp 0.637615747287672 0.867698268410825 NA NA prediction 0.460165042246306 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91940519 chr8:91940518 synonymous SNV . 0 20 hm7G_associated_SNPs_23786 0 0 0 0 2 NECAB1 chr8:91940451 3'AG 91940451 Downstream 68bp 21940 chr8 91940518 91940518 1 + G T STAD 91940519 + 91940499 91940539 41 AGAAATTAATTGATAGACTGGAAAAGAAGGTAGGTGCTTTC AGAAATTAATTGATAGACTTGAAAAGAAGGTAGGTGCTTTC < 41bp 0.637615747287672 0.867698268410825 NA NA prediction 0.460165042246306 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91940519 chr8:91940518 synonymous SNV . 0 20 hm7G_associated_SNPs_23786 0 0 0 0 2 NECAB1 chr8:91940527 5'GT 91940527 Upstream 10bp 21941 chr2 170597966 170597966 1 + G T UCEC 170597967 + 170597947 170597987 41 TGGCCACTGTGGCTACAGAGGAAGCTGCACCTATGACAAAG TGGCCACTGTGGCTACAGATGAAGCTGCACCTATGACAAAG < 41bp 0.65296846629067 0.883038192923533 NA NA prediction 0.460139453265725 Functional Gain - KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170597967 chr2:170597966 stopgain 1.000 1 20 hm7G_associated_SNPs_23789 0 0 0 0 2 KLHL23;PHOSPHO2-KLHL23 chr2:170597895 3'AG 170597895 Downstream 72bp 21942 chr2 170597966 170597966 1 + G T UCEC 170597967 + 170597947 170597987 41 TGGCCACTGTGGCTACAGAGGAAGCTGCACCTATGACAAAG TGGCCACTGTGGCTACAGATGAAGCTGCACCTATGACAAAG < 41bp 0.65296846629067 0.883038192923533 NA NA prediction 0.460139453265725 Functional Gain - KLHL23;PHOSPHO2-KLHL23 ENSG00000213160 CDS Human protein_coding chr2:170597967 chr2:170597966 stopgain 1.000 1 20 hm7G_associated_SNPs_23789 0 0 0 0 2 KLHL23;PHOSPHO2-KLHL23 chr2:170598047 5'GT 170598047 Upstream 82bp 21943 chr2 28814580 28814580 1 + G T STAD 28814581 + 28814561 28814601 41 CCTTAGGGTCATGGGACCTGGCTGCCATGCAGGGACAGAGC CCTTAGGGTCATGGGACCTTGCTGCCATGCAGGGACAGAGC < 41bp 0.386909127856153 0.730044147799323 NA NA prediction 0.460088295598647 Functional Gain - PLB1 ENSG00000163803 CDS Human protein_coding chr2:28814581 chr2:28814580 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_23792 0 0 0 0 1 PLB1 chr2:28814627 5'GT 28814627 Upstream 48bp 21944 chr12 113382446 113382446 1 + G T LUAD 113382447 + 113382427 113382467 41 ATCTTGCTGGTGAAGCACTGGTACCACCAGGTGAAGCCACT ATCTTGCTGGTGAAGCACTTGTACCACCAGGTGAAGCCACT < 41bp 0.388205382151402 0.730042286971414 NA NA prediction 0.460084573942828 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113382447 chr12:113382446 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_23793 0 0 0 0 1 OAS3 chr12:113382456 5'GT 113382456 Upstream 11bp 21945 chr4 159493904 159493904 1 + G T LIHC 159493905 + 159493885 159493925 41 CTTGGCTATTTCCCCTGTGGGAACATCACAAAGTGCTTGCC CTTGGCTATTTCCCCTGTGTGAACATCACAAAGTGCTTGCC < 41bp 0.499920028836206 0.730027542678112 NA NA prediction 0.460055085356225 Functional Gain - RXFP1 ENSG00000171509 CDS Human protein_coding chr4:159493905 chr4:159493904 nonsynonymous SNV 0.940 5 20 hm7G_associated_SNPs_23795 0 0 0 0 2 RXFP1 chr4:159493850 3'AG 159493850 Downstream 55bp 21946 chr4 159493904 159493904 1 + G T LIHC 159493905 + 159493885 159493925 41 CTTGGCTATTTCCCCTGTGGGAACATCACAAAGTGCTTGCC CTTGGCTATTTCCCCTGTGTGAACATCACAAAGTGCTTGCC < 41bp 0.499920028836206 0.730027542678112 NA NA prediction 0.460055085356225 Functional Gain - RXFP1 ENSG00000171509 CDS Human protein_coding chr4:159493905 chr4:159493904 nonsynonymous SNV 0.940 5 20 hm7G_associated_SNPs_23795 0 0 0 0 2 RXFP1 chr4:159493987 5'GT 159493987 Upstream 84bp 21947 chr14 74425908 74425908 1 + G T UCEC 74425909 + 74425889 74425929 41 CAGAGATTTCTTCCCTCTGGGCCTATTGCTCTGCTCCCGGT CAGAGATTTCTTCCCTCTGTGCCTATTGCTCTGCTCCCGGT < 41bp 0.379193326852131 0.73002228829844 NA NA prediction 0.46004457659688 Functional Gain - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74425909 chr14:74425908 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23796 0 0 1 0 2 COQ6 chr14:74425865 3'AG 74425865 Downstream 44bp 21948 chr14 74425908 74425908 1 + G T UCEC 74425909 + 74425889 74425929 41 CAGAGATTTCTTCCCTCTGGGCCTATTGCTCTGCTCCCGGT CAGAGATTTCTTCCCTCTGTGCCTATTGCTCTGCTCCCGGT < 41bp 0.379193326852131 0.73002228829844 NA NA prediction 0.46004457659688 Functional Gain - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74425909 chr14:74425908 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_23796 0 0 1 0 2 COQ6 chr14:74425927 5'GT 74425927 Upstream 20bp 21949 chr19 4475538 4475538 1 + G T COAD 4475539 + 4475519 4475559 41 GCTTCAATGAAGGGCTGTGGGAGATCCAGAACAACCCCCAC GCTTCAATGAAGGGCTGTGTGAGATCCAGAACAACCCCCAC < 41bp 0.661116782270929 0.891130080556045 NA NA prediction 0.460026596570232 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4475539 chr19:4475538 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_23797 0 0 1 0 1 HDGFL2 chr19:4475580 5'GT 4475580 Upstream 43bp 21950 chr6 132196928 132196928 1 + G T LUSC 132196929 + 132196909 132196949 41 CATCTAGGCCCTCTTTGTTGGCTATGGACCTGGATTCAAGC CATCTAGGCCCTCTTTGTTTGCTATGGACCTGGATTCAAGC < 41bp 0.404629162350144 0.730009713301307 NA NA prediction 0.460019426602613 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132196929 chr6:132196928 nonsynonymous SNV 0.215 4 20 hm7G_associated_SNPs_23798 0 0 1 0 2 ENPP1 chr6:132196916 3'AG 132196916 Downstream 13bp 21951 chr6 132196928 132196928 1 + G T LUSC 132196929 + 132196909 132196949 41 CATCTAGGCCCTCTTTGTTGGCTATGGACCTGGATTCAAGC CATCTAGGCCCTCTTTGTTTGCTATGGACCTGGATTCAAGC < 41bp 0.404629162350144 0.730009713301307 NA NA prediction 0.460019426602613 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132196929 chr6:132196928 nonsynonymous SNV 0.215 4 20 hm7G_associated_SNPs_23798 0 0 1 0 2 ENPP1 chr6:132197003 5'GT 132197003 Upstream 76bp 21952 chr1 221054559 221054559 1 + G T COAD 221054560 + 221054540 221054580 41 CACTTCCCTGCTAACCGGTGGGCGGCCCGCCGGGGTGCACC CACTTCCCTGCTAACCGGTTGGCGGCCCGCCGGGGTGCACC < 41bp 0.670043340355999 0.900051013381177 NA NA prediction 0.460015346050355 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221054560 chr1:221054559 nonsynonymous SNV 0.428 5 20 hm7G_associated_SNPs_23799 0 0 0 0 1 HLX chr1:221054536 3'AG 221054536 Downstream 24bp 21953 chr4 2822418 2822418 1 + G T LUAD 2822419 + 2822399 2822439 41 AACCTGCTAACCATGCCTGGGGGCGTGGCCAAGGCTGGCTA AACCTGCTAACCATGCCTGTGGGCGTGGCCAAGGCTGGCTA < 41bp 0.399110910102493 0.729984368354119 NA NA prediction 0.459968736708238 Functional Gain - SH3BP2 ENSG00000087266 CDS Human protein_coding chr4:2822419 chr4:2822418 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_23802 0 0 1 0 2 SH3BP2 chr4:2822341 3'AG 2822341 Downstream 78bp 21954 chr4 2822418 2822418 1 + G T LUAD 2822419 + 2822399 2822439 41 AACCTGCTAACCATGCCTGGGGGCGTGGCCAAGGCTGGCTA AACCTGCTAACCATGCCTGTGGGCGTGGCCAAGGCTGGCTA < 41bp 0.399110910102493 0.729984368354119 NA NA prediction 0.459968736708238 Functional Gain - SH3BP2 ENSG00000087266 CDS Human protein_coding chr4:2822419 chr4:2822418 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_23802 0 0 1 0 2 SH3BP2 chr4:2822480 5'GT 2822480 Upstream 63bp 21955 chr11 74883539 74883539 1 + G T UCEC 74883540 + 74883520 74883560 41 CCTACTTCTTCTTCCCCAAGGAAATGCCCAAGGAAAAACGT CCTACTTCTTCTTCCCCAATGAAATGCCCAAGGAAAAACGT < 41bp 0.374639431888512 0.729963844846274 NA NA prediction 0.459927689692548 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74883540 chr11:74883539 nonsynonymous SNV 0.968 2 20 hm7G_associated_SNPs_23805 0 0 0 0 1 SLCO2B1 chr11:74883614 5'GT 74883614 Upstream 76bp 21956 chr22 26177727 26177727 1 + G T LUAD 26177728 + 26177708 26177748 41 TTTTGGAGAAGAGCCGCGTGGCACGGCAGCCGGAAGGGGAA TTTTGGAGAAGAGCCGCGTTGCACGGCAGCCGGAAGGGGAA < 41bp 0.385661901074648 0.729936928869086 NA NA prediction 0.459873857738171 Functional Gain - MYO18B ENSG00000133454 CDS Human protein_coding chr22:26177728 chr22:26177727 synonymous SNV . 0 20 hm7G_associated_SNPs_23807 0 0 0 0 2 MYO18B chr22:26177701 3'AG 26177701 Downstream 27bp 21957 chr22 26177727 26177727 1 + G T LUAD 26177728 + 26177708 26177748 41 TTTTGGAGAAGAGCCGCGTGGCACGGCAGCCGGAAGGGGAA TTTTGGAGAAGAGCCGCGTTGCACGGCAGCCGGAAGGGGAA < 41bp 0.385661901074648 0.729936928869086 NA NA prediction 0.459873857738171 Functional Gain - MYO18B ENSG00000133454 CDS Human protein_coding chr22:26177728 chr22:26177727 synonymous SNV . 0 20 hm7G_associated_SNPs_23807 0 0 0 0 2 MYO18B chr22:26177801 5'GT 26177801 Upstream 75bp 21958 chr5 10450224 10450224 1 + G T LUAD 10450225 + 10450205 10450245 41 GGATGCAGCATGCTTGGTGGGGTATGTACCTATAAACAGCA GGATGCAGCATGCTTGGTGTGGTATGTACCTATAAACAGCA < 41bp 0.403875651131356 0.729927306496681 NA NA prediction 0.459854612993362 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10450225 chr5:10450224 nonsynonymous SNV 0.473 3 20 hm7G_associated_SNPs_23808 0 0 0 0 1 ROPN1L chr5:10450225 5'GT 10450225 Upstream 2bp 21959 chr5 139744032 139744032 1 + G T UCEC 139744033 + 139744013 139744053 41 TGGTGCTGGTGGCCACAGAGGCCAGTGTGCTGGTGCGCTAC TGGTGCTGGTGGCCACAGATGCCAGTGTGCTGGTGCGCTAC < 41bp 0.673384567396532 0.903307728909127 NA NA prediction 0.459846323025191 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139744033 chr5:139744032 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_23810 0 0 0 0 1 SLC4A9 chr5:139743948 3'AG 139743948 Downstream 85bp 21960 chr4 56726683 56726683 1 + G T UCEC 56726684 + 56726664 56726704 41 CCCTTCGAGATCTTGCTGTGGTAGATGCCAAAGATGCTATC CCCTTCGAGATCTTGCTGTTGTAGATGCCAAAGATGCTATC < 41bp 0.404439868024114 0.729907160108999 NA NA prediction 0.459814320217997 Functional Gain - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56726684 chr4:56726683 synonymous SNV . 0 20 hm7G_associated_SNPs_23811 0 0 1 0 1 EXOC1 chr4:56726707 5'GT 56726707 Upstream 25bp 21961 chr1 226030140 226030140 1 + G T LUAD 226030141 + 226030121 226030161 41 TTTCCACCTGGACCAATACGGAATTCCGATACCTGGAGGAT TTTCCACCTGGACCAATACTGAATTCCGATACCTGGAGGAT < 41bp 0.666809208506256 0.896705122316547 NA NA prediction 0.45979182762058 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226030141 chr1:226030140 synonymous SNV . 0 20 hm7G_associated_SNPs_23812 0 0 1 0 2 EPHX1 chr1:226030067 3'AG 226030067 Downstream 74bp 21962 chr1 226030140 226030140 1 + G T LUAD 226030141 + 226030121 226030161 41 TTTCCACCTGGACCAATACGGAATTCCGATACCTGGAGGAT TTTCCACCTGGACCAATACTGAATTCCGATACCTGGAGGAT < 41bp 0.666809208506256 0.896705122316547 NA NA prediction 0.45979182762058 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226030141 chr1:226030140 synonymous SNV . 0 20 hm7G_associated_SNPs_23812 0 0 1 0 2 EPHX1 chr1:226030175 5'GT 226030175 Upstream 36bp 21963 chr18 72245400 72245400 1 + G T UCEC 72245401 + 72245381 72245421 41 ATTTTATTTTAATATAGGAGGAGATTCTAATGCACCTCTGG ATTTTATTTTAATATAGGATGAGATTCTAATGCACCTCTGG < 41bp 0.411629363524864 0.729894429154241 NA NA prediction 0.459788858308482 Functional Gain - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72245401 chr18:72245400 nonsynonymous SNV 0.960 1 20 hm7G_associated_SNPs_23813 0 0 0 0 1 CNDP1 chr18:72245398 3'AG 72245398 Downstream 3bp 21964 chr16 3016379 3016379 1 + G A UCS 3016380 + 3016360 3016400 41 GGCACCCCCAGCCCTCAGCGGCCCCAGCGGCACCTCCACGA GGCACCCCCAGCCCTCAGCAGCCCCAGCGGCACCTCCACGA < 41bp 0.513134705875159 0.7429979213256 NA NA prediction 0.459726430900882 Functional Gain - KREMEN2 ENSG00000131650 CDS Human protein_coding chr16:3016380 chr16:3016379 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_23815 0 0 0 0 2 KREMEN2 chr16:3016326 3'AG 3016326 Downstream 54bp 21965 chr16 3016379 3016379 1 + G A UCS 3016380 + 3016360 3016400 41 GGCACCCCCAGCCCTCAGCGGCCCCAGCGGCACCTCCACGA GGCACCCCCAGCCCTCAGCAGCCCCAGCGGCACCTCCACGA < 41bp 0.513134705875159 0.7429979213256 NA NA prediction 0.459726430900882 Functional Gain - KREMEN2 ENSG00000131650 CDS Human protein_coding chr16:3016380 chr16:3016379 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_23815 0 0 0 0 2 KREMEN2 chr16:3016450 5'GT 3016450 Upstream 72bp 21966 chr19 41707208 41707208 1 + G T LUSC 41707209 + 41707189 41707229 41 CATTTATTTGCTGTTTGCTGGGACGATGACGGTCAGCACCA CATTTATTTGCTGTTTGCTTGGACGATGACGGTCAGCACCA < 41bp 0.669749068644238 0.899608259640956 NA NA prediction 0.459718381993435 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707209 chr19:41707208 nonsynonymous SNV 0.072 5 20 hm7G_associated_SNPs_23816 0 0 0 0 2 CYP2S1 chr19:41707136 3'AG 41707136 Downstream 73bp 21967 chr19 41707208 41707208 1 + G T LUSC 41707209 + 41707189 41707229 41 CATTTATTTGCTGTTTGCTGGGACGATGACGGTCAGCACCA CATTTATTTGCTGTTTGCTTGGACGATGACGGTCAGCACCA < 41bp 0.669749068644238 0.899608259640956 NA NA prediction 0.459718381993435 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41707209 chr19:41707208 nonsynonymous SNV 0.072 5 20 hm7G_associated_SNPs_23816 0 0 0 0 2 CYP2S1 chr19:41707277 5'GT 41707277 Upstream 70bp 21968 chr19 7986934 7986934 1 + G A BLCA 7986935 + 7986915 7986955 41 GCCAGGTGCTCACCATCGCGGCCACGGAACCGGTCACCCTC GCCAGGTGCTCACCATCGCAGCCACGGAACCGGTCACCCTC < 41bp 0.515896256503546 0.74574684277535 NA NA prediction 0.459701172543608 Functional Gain - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986935 chr19:7986934 synonymous SNV . 0 20 hm7G_associated_SNPs_23817 0 0 0 0 1 SNAPC2 chr19:7986920 3'AG 7986920 Downstream 15bp 21969 chr9 133543603 133543603 1 + G T UCEC 133543604 + 133543584 133543624 41 GCCAGCCAGGAGGACCACCGGAGCTGGATGACCTACATCAA GCCAGCCAGGAGGACCACCTGAGCTGGATGACCTACATCAA < 41bp 0.664435138574339 0.894260384474398 NA NA prediction 0.459650491800119 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133543604 chr9:133543603 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_23819 0 0 0 0 2 PRDM12 chr9:133543545 3'AG 133543545 Downstream 59bp 21970 chr9 133543603 133543603 1 + G T UCEC 133543604 + 133543584 133543624 41 GCCAGCCAGGAGGACCACCGGAGCTGGATGACCTACATCAA GCCAGCCAGGAGGACCACCTGAGCTGGATGACCTACATCAA < 41bp 0.664435138574339 0.894260384474398 NA NA prediction 0.459650491800119 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133543604 chr9:133543603 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_23819 0 0 0 0 2 PRDM12 chr9:133543700 5'GT 133543700 Upstream 98bp 21971 chr2 239051536 239051536 1 + G A rs200997675 239051537 + 239051517 239051557 41 AGGTGAGGAGCCCACCCCCGGCCTTGGGAACTTTGCCTTCT AGGTGAGGAGCCCACCCCCAGCCTTGGGAACTTTGCCTTCT < 41bp 0.496369033766758 0.729804513194224 NA NA prediction 0.459609026388447 Functional Gain - KLHL30 ENSG00000168427 CDS Human protein_coding chr2:239051537 chr2:239051536 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23820 0 0 0 0 2 KLHL30 chr2:239051440 3'AG 239051440 Downstream 97bp 21972 chr2 239051536 239051536 1 + G A rs200997675 239051537 + 239051517 239051557 41 AGGTGAGGAGCCCACCCCCGGCCTTGGGAACTTTGCCTTCT AGGTGAGGAGCCCACCCCCAGCCTTGGGAACTTTGCCTTCT < 41bp 0.496369033766758 0.729804513194224 NA NA prediction 0.459609026388447 Functional Gain - KLHL30 ENSG00000168427 CDS Human protein_coding chr2:239051537 chr2:239051536 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23820 0 0 0 0 2 KLHL30 chr2:239051572 5'GT 239051572 Upstream 37bp 21973 chr10 85944516 85944516 1 + G T rs76221724 85944517 + 85944497 85944537 41 TGCCTGGGGCACTCCCACAGGTGTAGCACTCCCAAAGCAAG TGCCTGGGGCACTCCCACATGTGTAGCACTCCCAAAGCAAG < 41bp 0.418361942072091 0.729791494269809 NA NA prediction 0.459582988539618 Functional Gain - C10orf99 ENSG00000188373 CDS Human protein_coding chr10:85944517 chr10:85944516 nonsynonymous SNV 0.242 3 20 hm7G_associated_SNPs_23822 0 0 0 0 1 C10orf99 chr10:85944437 3'AG 85944437 Downstream 80bp 21974 chr20 44640804 44640804 1 + G T LUAD 44640805 + 44640785 44640825 41 CGGTGATGGGGGGCAACTCGGCGGGGGAGCTGTGCGTCTTC CGGTGATGGGGGGCAACTCTGCGGGGGAGCTGTGCGTCTTC < 41bp 0.669424420353209 0.899201439077352 NA NA prediction 0.459554037448286 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640805 chr20:44640804 synonymous SNV . 0 20 hm7G_associated_SNPs_23824 0 0 0 0 1 MMP9 chr20:44640776 3'AG 44640776 Downstream 29bp 21975 chr6 24785955 24785955 1 + G T UCEC 24785956 + 24785936 24785976 41 CTGTTGAGGATTCTCTAGTGGAAGACTCAGAAATTGGCACG CTGTTGAGGATTCTCTAGTTGAAGACTCAGAAATTGGCACG < 41bp 0.644376073872406 0.874140561739133 NA NA prediction 0.459528975733454 Functional Gain - GMNN ENSG00000112312 CDS Human protein_coding chr6:24785956 chr6:24785955 synonymous SNV . 0 20 hm7G_associated_SNPs_23826 0 0 1 0 1 GMNN chr6:24785866 3'AG 24785866 Downstream 90bp 21976 chr17 64880703 64880703 1 + G T UCEC 64880704 + 64880684 64880724 41 AGATGCTCAACAGGACCAAGGATGCAGAGACCTACTTCAAC AGATGCTCAACAGGACCAATGATGCAGAGACCTACTTCAAC < 41bp 0.665194921773815 0.894953173522672 NA NA prediction 0.459516503497714 Functional Gain - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64880704 chr17:64880703 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_23828 0 0 0 0 1 CACNG5 chr17:64880778 5'GT 64880778 Upstream 76bp 21977 chr17 7258954 7258954 1 + G T COAD 7258955 + 7258935 7258975 41 AGACTCACAGAGTCCTGAGGGTCATGGGTGAGGTCAAGGGG AGACTCACAGAGTCCTGAGTGTCATGGGTGAGGTCAAGGGG < 41bp 0.652774518100397 0.882532251251548 NA NA prediction 0.459515466302302 Functional Gain - TMEM95 ENSG00000182896 CDS Human protein_coding chr17:7258955 chr17:7258954 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_23829 0 0 0 0 2 TMEM95 chr17:7258905 3'AG 7258905 Downstream 50bp 21978 chr17 7258954 7258954 1 + G T COAD 7258955 + 7258935 7258975 41 AGACTCACAGAGTCCTGAGGGTCATGGGTGAGGTCAAGGGG AGACTCACAGAGTCCTGAGTGTCATGGGTGAGGTCAAGGGG < 41bp 0.652774518100397 0.882532251251548 NA NA prediction 0.459515466302302 Functional Gain - TMEM95 ENSG00000182896 CDS Human protein_coding chr17:7258955 chr17:7258954 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_23829 0 0 0 0 2 TMEM95 chr17:7258961 5'GT 7258961 Upstream 8bp 21979 chr7 34014327 34014327 1 + G T UCEC 34014328 + 34014308 34014348 41 TTCCAGGCTGTGTGTTTGAGGGTGTGCAGTATCAAGAAGGG TTCCAGGCTGTGTGTTTGATGGTGTGCAGTATCAAGAAGGG < 41bp 0.396411681840227 0.729738190348435 NA NA prediction 0.45947638069687 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34014328 chr7:34014327 nonsynonymous SNV 0.802 1 20 hm7G_associated_SNPs_23831 0 0 0 0 2 BMPER chr7:34014314 3'AG 34014314 Downstream 14bp 21980 chr7 34014327 34014327 1 + G T UCEC 34014328 + 34014308 34014348 41 TTCCAGGCTGTGTGTTTGAGGGTGTGCAGTATCAAGAAGGG TTCCAGGCTGTGTGTTTGATGGTGTGCAGTATCAAGAAGGG < 41bp 0.396411681840227 0.729738190348435 NA NA prediction 0.45947638069687 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34014328 chr7:34014327 nonsynonymous SNV 0.802 1 20 hm7G_associated_SNPs_23831 0 0 0 0 2 BMPER chr7:34014396 5'GT 34014396 Upstream 70bp 21981 chr11 67197006 67197006 1 + G T OV 67197007 + 67196987 67197027 41 CTGCCCTACAGGTGTTCCAGGTGCGAAAGGTGCAAGGCACC CTGCCCTACAGGTGTTCCATGTGCGAAAGGTGCAAGGCACC < 41bp 0.658918309652134 0.888635995214152 NA NA prediction 0.459435371124037 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67197007 chr11:67197006 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_23833 0 0 1 0 2 RPS6KB2 chr11:67196998 3'AG 67196998 Downstream 9bp 21982 chr11 67197006 67197006 1 + G T OV 67197007 + 67196987 67197027 41 CTGCCCTACAGGTGTTCCAGGTGCGAAAGGTGCAAGGCACC CTGCCCTACAGGTGTTCCATGTGCGAAAGGTGCAAGGCACC < 41bp 0.658918309652134 0.888635995214152 NA NA prediction 0.459435371124037 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67197007 chr11:67197006 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_23833 0 0 1 0 2 RPS6KB2 chr11:67197066 5'GT 67197066 Upstream 61bp 21983 chr15 73994861 73994861 1 + G T LUAD 73994862 + 73994842 73994882 41 TGCAGCGCGTGCGTGTGGCGGACGAGGGCAGCTTCACCTGC TGCAGCGCGTGCGTGTGGCTGACGAGGGCAGCTTCACCTGC < 41bp 0.38456888816352 0.72971404262619 NA NA prediction 0.45942808525238 Functional Gain - CD276 ENSG00000103855 CDS Human protein_coding chr15:73994862 chr15:73994861 synonymous SNV . 0 20 hm7G_associated_SNPs_23835 0 0 0 0 1 CD276 chr15:73994934 5'GT 73994934 Upstream 74bp 21984 chr17 12016657 12016657 1 + G T LUAD 12016658 + 12016638 12016678 41 TGCCAAGACAAGAGATGCTGGCTGTAGGCCATACATGGCAG TGCCAAGACAAGAGATGCTTGCTGTAGGCCATACATGGCAG < 41bp 0.665662068510047 0.895372786729279 NA NA prediction 0.459421436438464 Functional Gain - MAP2K4 ENSG00000065559 CDS Human protein_coding chr17:12016658 chr17:12016657 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23836 0 0 1 0 1 MAP2K4 chr17:12016677 5'GT 12016677 Upstream 21bp 21985 chr10 82329944 82329944 1 + G T LUAD 82329945 + 82329925 82329965 41 ACATCCAATGGCTCCTAGGGGCAGATGGCGAGGTCTGGGTC ACATCCAATGGCTCCTAGGTGCAGATGGCGAGGTCTGGGTC < 41bp 0.663894811433572 0.893604918248521 NA NA prediction 0.459420213629898 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82329945 chr10:82329944 synonymous SNV . 0 20 hm7G_associated_SNPs_23837 0 0 0 0 1 SH2D4B chr10:82329910 3'AG 82329910 Downstream 35bp 21986 chr3 52281715 52281715 1 + G T SARC 52281716 + 52281696 52281736 41 AGGATGAGGTGATCGGGCGGGAGCTGGAGGCCTCAGGCCAG AGGATGAGGTGATCGGGCGTGAGCTGGAGGCCTCAGGCCAG < 41bp 0.667580857080259 0.897289484071013 NA NA prediction 0.459417253981507 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281716 chr3:52281715 synonymous SNV . 0 20 hm7G_associated_SNPs_23838 0 0 0 0 2 PPM1M chr3:52281698 3'AG 52281698 Downstream 18bp 21987 chr3 52281715 52281715 1 + G T SARC 52281716 + 52281696 52281736 41 AGGATGAGGTGATCGGGCGGGAGCTGGAGGCCTCAGGCCAG AGGATGAGGTGATCGGGCGTGAGCTGGAGGCCTCAGGCCAG < 41bp 0.667580857080259 0.897289484071013 NA NA prediction 0.459417253981507 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52281716 chr3:52281715 synonymous SNV . 0 20 hm7G_associated_SNPs_23838 0 0 0 0 2 PPM1M chr3:52281810 5'GT 52281810 Upstream 96bp 21988 chr19 36215929 36215929 1 + G T LUSC 36215930 + 36215910 36215950 41 CTTTGCTTCTTTTCCCAATGGCTGGACTGGAAAGCAGAAGT CTTTGCTTCTTTTCCCAATTGCTGGACTGGAAAGCAGAAGT < 41bp 0.381527672754487 0.729689172947202 NA NA prediction 0.459378345894405 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36215930 chr19:36215929 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23841 0 0 1 0 2 KMT2B chr19:36215890 3'AG 36215890 Downstream 40bp 21989 chr19 36215929 36215929 1 + G T LUSC 36215930 + 36215910 36215950 41 CTTTGCTTCTTTTCCCAATGGCTGGACTGGAAAGCAGAAGT CTTTGCTTCTTTTCCCAATTGCTGGACTGGAAAGCAGAAGT < 41bp 0.381527672754487 0.729689172947202 NA NA prediction 0.459378345894405 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36215930 chr19:36215929 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23841 0 0 1 0 2 KMT2B chr19:36215988 5'GT 36215988 Upstream 60bp 21990 chr14 74360539 74360539 1 + G T LUAD 74360540 + 74360520 74360560 41 GAATACGTCCATCCCATTGGGACAGGGGCTTGTAGAATCAG GAATACGTCCATCCCATTGTGACAGGGGCTTGTAGAATCAG < 41bp 0.39847954002493 0.72966550257792 NA NA prediction 0.45933100515584 Functional Gain - ZNF410 ENSG00000119725 CDS Human protein_coding chr14:74360540 chr14:74360539 stopgain 0.993 1 20 hm7G_associated_SNPs_23843 0 0 1 1 2 ZNF410 chr14:74360500 3'AG 74360500 Downstream 40bp 21991 chr14 74360539 74360539 1 + G T LUAD 74360540 + 74360520 74360560 41 GAATACGTCCATCCCATTGGGACAGGGGCTTGTAGAATCAG GAATACGTCCATCCCATTGTGACAGGGGCTTGTAGAATCAG < 41bp 0.39847954002493 0.72966550257792 NA NA prediction 0.45933100515584 Functional Gain - ZNF410 ENSG00000119725 CDS Human protein_coding chr14:74360540 chr14:74360539 stopgain 0.993 1 20 hm7G_associated_SNPs_23843 0 0 1 1 2 ZNF410 chr14:74360635 5'GT 74360635 Upstream 97bp 21992 chr5 161300307 161300307 1 + G T BLCA 161300308 + 161300288 161300328 41 ATGCCCAACAAACTCCTGCGGATCACAGAGGATGGCACCTT ATGCCCAACAAACTCCTGCTGATCACAGAGGATGGCACCTT < 41bp 0.658278565879625 0.887917978544005 NA NA prediction 0.459278825328759 Functional Gain - GABRA1 ENSG00000022355 CDS Human protein_coding chr5:161300308 chr5:161300307 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_23845 0 0 0 0 1 GABRA1 chr5:161300343 5'GT 161300343 Upstream 37bp 21993 chr12 4460439 4460439 1 + G T LUAD 4460440 + 4460420 4460460 41 TGGACTGTTTCAGAAATACGGGGTTGTAGAAGGCAAAGCGC TGGACTGTTTCAGAAATACTGGGTTGTAGAAGGCAAAGCGC < 41bp 0.658927751724521 0.888536937846942 NA NA prediction 0.459218372244841 Functional Gain - TIGAR ENSG00000078237 CDS Human protein_coding chr12:4460440 chr12:4460439 nonsynonymous SNV 0.863 5 20 hm7G_associated_SNPs_23847 0 0 1 0 1 TIGAR chr12:4460433 3'AG 4460433 Downstream 7bp 21994 chr12 110034265 110034265 1 + G T LUAD 110034266 + 110034246 110034286 41 AAGTGGAGGCCACGAAGCAGGCCCTGACCAGCTGTGGCTTT AAGTGGAGGCCACGAAGCATGCCCTGACCAGCTGTGGCTTT < 41bp 0.658808141497211 0.888410883121448 NA NA prediction 0.459205483248474 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110034266 chr12:110034265 nonsynonymous SNV 0.934 2 20 hm7G_associated_SNPs_23848 0 0 0 0 1 MVK chr12:110034231 3'AG 110034231 Downstream 35bp 21995 chr10 50870705 50870705 1 + G T LUAD 50870706 + 50870686 50870726 41 CACAGGCCATAACAGGGATGGCCATTGACAACCACCTGCTG CACAGGCCATAACAGGGATTGCCATTGACAACCACCTGCTG < 41bp 0.384152565135135 0.729601998275686 NA NA prediction 0.459203996551371 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50870706 chr10:50870705 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23849 0 0 0 0 1 CHAT chr10:50870691 3'AG 50870691 Downstream 15bp 21996 chr17 45681379 45681379 1 + G T SKCM 45681380 + 45681360 45681400 41 ACCTTTCTCTGCCCCCTGTGGATCGACTTGGATTACAGAAT ACCTTTCTCTGCCCCCTGTTGATCGACTTGGATTACAGAAT < 41bp 0.386560065728175 0.729601314771991 NA NA prediction 0.459202629543982 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45681380 chr17:45681379 synonymous SNV . 0 20 hm7G_associated_SNPs_23850 0 0 1 0 2 NPEPPS chr17:45681281 3'AG 45681281 Downstream 99bp 21997 chr17 45681379 45681379 1 + G T SKCM 45681380 + 45681360 45681400 41 ACCTTTCTCTGCCCCCTGTGGATCGACTTGGATTACAGAAT ACCTTTCTCTGCCCCCTGTTGATCGACTTGGATTACAGAAT < 41bp 0.386560065728175 0.729601314771991 NA NA prediction 0.459202629543982 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45681380 chr17:45681379 synonymous SNV . 0 20 hm7G_associated_SNPs_23850 0 0 1 0 2 NPEPPS chr17:45681415 5'GT 45681415 Upstream 37bp 21998 chr9 117379536 117379536 1 + G T TGCT 117379537 + 117379517 117379557 41 ATTGCCCCCCTCCTCCCCTGGCTGGAGTGCCCTGCCTGGAG ATTGCCCCCCTCCTCCCCTTGCTGGAGTGCCCTGCCTGGAG < 41bp 0.421659110407258 0.729594509306242 NA NA prediction 0.459189018612485 Functional Gain - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117379537 chr9:117379536 nonsynonymous SNV 0.078 2 20 hm7G_associated_SNPs_23851 0 0 1 0 1 TMEM268 chr9:117379581 5'GT 117379581 Upstream 46bp 21999 chrX 12837626 12837626 1 + G T UCEC 12837627 + 12837607 12837647 41 TCATTTGTGCCTTTGCCAGGGTTACATCAATTGCAGACAGG TCATTTGTGCCTTTGCCAGTGTTACATCAATTGCAGACAGG < 41bp 0.402145398005528 0.72957774841517 NA NA prediction 0.459155496830339 Functional Gain - PRPS2 ENSG00000101911 CDS Human protein_coding chrX:12837627 chrX:12837626 nonsynonymous SNV 0.935 3 20 hm7G_associated_SNPs_23853 0 0 0 0 1 PRPS2 chrX:12837626 5'GT 12837626 Upstream 1bp 22000 chr5 135186175 135186175 1 + G T OV 135186176 + 135186156 135186196 41 TGCATCCGCGTGGTGTACAGGAGGGAGAGTGTAAGTGCCCC TGCATCCGCGTGGTGTACATGAGGGAGAGTGTAAGTGCCCC < 41bp 0.659249693318339 0.888787130511619 NA NA prediction 0.459074874386561 Functional Gain - SLC25A48 ENSG00000145832 CDS Human protein_coding chr5:135186176 chr5:135186175 nonsynonymous SNV 0.974 2 20 hm7G_associated_SNPs_23854 0 0 0 0 1 SLC25A48 chr5:135186114 3'AG 135186114 Downstream 62bp 22001 chr9 4583137 4583137 1 + G T UCEC 4583138 + 4583118 4583158 41 CCGTGGGCCTGCCCGCCGAGGATGTCACCCTGATCATTGCT CCGTGGGCCTGCCCGCCGATGATGTCACCCTGATCATTGCT < 41bp 0.382657519896312 0.729515085053282 NA NA prediction 0.459030170106565 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4583138 chr9:4583137 nonsynonymous SNV 0.944 0 20 hm7G_associated_SNPs_23855 0 0 0 0 2 SLC1A1 chr9:4583038 3'AG 4583038 Downstream 100bp 22002 chr9 4583137 4583137 1 + G T UCEC 4583138 + 4583118 4583158 41 CCGTGGGCCTGCCCGCCGAGGATGTCACCCTGATCATTGCT CCGTGGGCCTGCCCGCCGATGATGTCACCCTGATCATTGCT < 41bp 0.382657519896312 0.729515085053282 NA NA prediction 0.459030170106565 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4583138 chr9:4583137 nonsynonymous SNV 0.944 0 20 hm7G_associated_SNPs_23855 0 0 0 0 2 SLC1A1 chr9:4583172 5'GT 4583172 Upstream 36bp 22003 chr5 914637 914637 1 + G T SKCM 914638 + 914618 914658 41 CCGAGAGCTAGAGATGATTGGCTTCATTGAAAACAACGTGT CCGAGAGCTAGAGATGATTTGCTTCATTGAAAACAACGTGT < 41bp 0.664414331925473 0.893922677130411 NA NA prediction 0.459016690409876 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:914638 chr5:914637 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_23858 0 0 1 0 1 TRIP13 chr5:914692 5'GT 914692 Upstream 56bp 22004 chr1 36772024 36772024 1 + G T LIHC 36772025 + 36772005 36772045 41 AGGGCGCCCCGGAAACCATGGGTAAGTGCGGAGGCTTTGAG AGGGCGCCCCGGAAACCATTGGTAAGTGCGGAGGCTTTGAG < 41bp 0.394131464246141 0.72949726280555 NA NA prediction 0.458994525611099 Functional Gain - SH3D21 ENSG00000214193 CDS Human protein_coding chr1:36772025 chr1:36772024 nonsynonymous SNV 0.944 0 20 hm7G_associated_SNPs_23859 0 0 0 0 1 SH3D21 chr1:36772025 5'GT 36772025 Upstream 2bp 22005 chr11 72535165 72535165 1 + G T SARC 72535166 + 72535146 72535186 41 ATGTGGTGAAGGGGCTTCTGGAGTAAGTGTGTGTGTGCCTG ATGTGGTGAAGGGGCTTCTTGAGTAAGTGTGTGTGTGCCTG < 41bp 0.422800541441798 0.729490503572203 NA NA prediction 0.458981007144406 Functional Gain - ATG16L2 ENSG00000168010 CDS Human protein_coding chr11:72535166 chr11:72535165 synonymous SNV . 0 20 hm7G_associated_SNPs_23860 0 0 1 0 2 ATG16L2 chr11:72535105 3'AG 72535105 Downstream 61bp 22006 chr11 72535165 72535165 1 + G T SARC 72535166 + 72535146 72535186 41 ATGTGGTGAAGGGGCTTCTGGAGTAAGTGTGTGTGTGCCTG ATGTGGTGAAGGGGCTTCTTGAGTAAGTGTGTGTGTGCCTG < 41bp 0.422800541441798 0.729490503572203 NA NA prediction 0.458981007144406 Functional Gain - ATG16L2 ENSG00000168010 CDS Human protein_coding chr11:72535166 chr11:72535165 synonymous SNV . 0 20 hm7G_associated_SNPs_23860 0 0 1 0 2 ATG16L2 chr11:72535167 5'GT 72535167 Upstream 3bp 22007 chr17 30320906 30320906 1 + G T UCEC 30320907 + 30320887 30320927 41 CTCTATAACAACAATACAAGGCAACAAACTGAAGCAAGAGA CTCTATAACAACAATACAATGCAACAAACTGAAGCAAGAGA < 41bp 0.647716996943155 0.877205777134039 NA NA prediction 0.458977560381767 Functional Gain - SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30320907 chr17:30320906 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_23861 0 0 1 0 1 SUZ12 chr17:30320884 3'AG 30320884 Downstream 23bp 22008 chr19 49868869 49868869 1 + G T OV 49868870 + 49868850 49868890 41 AACCAGGAGCACCAGCTGGGGAACAACACCCTCTCCAGCCA AACCAGGAGCACCAGCTGGTGAACAACACCCTCTCCAGCCA < 41bp 0.384794731271825 0.729482398297168 NA NA prediction 0.458964796594336 Functional Gain - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49868870 chr19:49868869 nonsynonymous SNV 0.287 4 20 hm7G_associated_SNPs_23863 0 0 0 0 1 DKKL1 chr19:49868906 5'GT 49868906 Upstream 38bp 22009 chr16 50335050 50335050 1 + G T UCEC 50335051 + 50335031 50335071 41 ACAAGGCGTACGAGGTGGAGGATGGGCACGGGCAGCAGCGG ACAAGGCGTACGAGGTGGATGATGGGCACGGGCAGCAGCGG < 41bp 0.673993684060732 0.903472385008522 NA NA prediction 0.458957401895579 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50335051 chr16:50335050 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_23864 0 0 1 0 2 ADCY7 chr16:50334993 3'AG 50334993 Downstream 58bp 22010 chr16 50335050 50335050 1 + G T UCEC 50335051 + 50335031 50335071 41 ACAAGGCGTACGAGGTGGAGGATGGGCACGGGCAGCAGCGG ACAAGGCGTACGAGGTGGATGATGGGCACGGGCAGCAGCGG < 41bp 0.673993684060732 0.903472385008522 NA NA prediction 0.458957401895579 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50335051 chr16:50335050 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_23864 0 0 1 0 2 ADCY7 chr16:50335125 5'GT 50335125 Upstream 76bp 22011 chr1 6267467 6267467 1 + G A COAD 6267468 + 6267448 6267488 41 GGTGCTGAAGGGTCCCAGCGGGCTCCCGCCGGTGGACCGGC GGTGCTGAAGGGTCCCAGCAGGCTCCCGCCGGTGGACCGGC < 41bp 0.500355665031246 0.729802123968176 NA NA prediction 0.45889291787386 Functional Gain - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6267468 chr1:6267467 nonsynonymous SNV 0.930 2 20 hm7G_associated_SNPs_23866 0 0 0 0 1 RNF207 chr1:6267439 3'AG 6267439 Downstream 29bp 22012 chr12 56630437 56630437 1 + G A OV 56630438 + 56630418 56630458 41 GGCCCCTCCTGGGCACCAAGGCCACAGTCATGGGCACCAGG GGCCCCTCCTGGGCACCAAAGCCACAGTCATGGGCACCAGG < 41bp 0.501207668627777 0.730650995875213 NA NA prediction 0.458886654494872 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56630438 chr12:56630437 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_23867 0 0 1 0 2 SLC39A5 chr12:56630366 3'AG 56630366 Downstream 72bp 22013 chr12 56630437 56630437 1 + G A OV 56630438 + 56630418 56630458 41 GGCCCCTCCTGGGCACCAAGGCCACAGTCATGGGCACCAGG GGCCCCTCCTGGGCACCAAAGCCACAGTCATGGGCACCAGG < 41bp 0.501207668627777 0.730650995875213 NA NA prediction 0.458886654494872 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56630438 chr12:56630437 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_23867 0 0 1 0 2 SLC39A5 chr12:56630530 5'GT 56630530 Upstream 94bp 22014 chr19 45312408 45312408 1 + G A rs28399600 45312409 + 45312389 45312429 41 CCCCGGACGCACCGGCCCAGGCGCGCGGGGCCCCGCGGCTG CCCCGGACGCACCGGCCCAAGCGCGCGGGGCCCCGCGGCTG < 41bp 0.489461094865354 0.72939877816841 NA NA prediction 0.45879755633682 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45312409 chr19:45312408 synonymous SNV . 0 20 hm7G_associated_SNPs_23873 0 0 1 0 1 BCAM chr19:45312463 5'GT 45312463 Upstream 56bp 22015 chr5 72427449 72427449 1 + G T UCEC 72427450 + 72427430 72427470 41 GGACGAATTCATCTTCTGAGGCCTCACACACTCCACATCTT GGACGAATTCATCTTCTGATGCCTCACACACTCCACATCTT < 41bp 0.401428767368617 0.729394604167524 NA NA prediction 0.458789208335048 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72427450 chr5:72427449 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23875 0 0 1 0 2 TMEM171 chr5:72427365 3'AG 72427365 Downstream 85bp 22016 chr5 72427449 72427449 1 + G T UCEC 72427450 + 72427430 72427470 41 GGACGAATTCATCTTCTGAGGCCTCACACACTCCACATCTT GGACGAATTCATCTTCTGATGCCTCACACACTCCACATCTT < 41bp 0.401428767368617 0.729394604167524 NA NA prediction 0.458789208335048 Functional Gain - TMEM171 ENSG00000157111 CDS Human protein_coding chr5:72427450 chr5:72427449 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23875 0 0 1 0 2 TMEM171 chr5:72427368 3'AG 72427368 Downstream 82bp 22017 chr3 129694666 129694666 1 + G A COAD 129694667 + 129694647 129694687 41 CCCAGACGCCGCGATGCCCGGCCCTTGGTTGCTGCTCGCTC CCCAGACGCCGCGATGCCCAGCCCTTGGTTGCTGCTCGCTC < 41bp 0.520779245389308 0.75017126067169 NA NA prediction 0.458784030564763 Functional Gain - TRH ENSG00000170893 CDS Human protein_coding chr3:129694667 chr3:129694666 nonsynonymous SNV 0.498 0 20 hm7G_associated_SNPs_23876 0 0 0 0 1 TRH chr3:129694652 3'AG 129694652 Downstream 15bp 22018 chr1 155011886 155011886 1 + G T LUAD 155011887 + 155011867 155011907 41 CTCTCCTGACAGGCTTGGGGGCCATGGGCTGGGGGACCTCC CTCTCCTGACAGGCTTGGGTGCCATGGGCTGGGGGACCTCC < 41bp 0.66840495670575 0.897775384746829 NA NA prediction 0.458740856082157 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155011887 chr1:155011886 synonymous SNV . 0 20 hm7G_associated_SNPs_23879 0 0 0 0 1 DCST1 chr1:155011879 3'AG 155011879 Downstream 8bp 22019 chr16 28507267 28507267 1 + G T UCEC 28507268 + 28507248 28507288 41 TTAGATGGGGAGGAAGCCAGGACAATCTCAGGCGGGGAGGA TTAGATGGGGAGGAAGCCATGACAATCTCAGGCGGGGAGGA < 41bp 0.39400560008753 0.729363122081669 NA NA prediction 0.458726244163338 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28507268 chr16:28507267 nonsynonymous SNV 0.017 2 20 hm7G_associated_SNPs_23881 0 0 0 0 1 APOBR chr16:28507236 3'AG 28507236 Downstream 32bp 22020 chr1 40431201 40431201 1 + G T THCA 40431202 + 40431182 40431222 41 AGCACCGAGCAGACTGAGCGGGATTCTGCCACCGCCTATCG AGCACCGAGCAGACTGAGCTGGATTCTGCCACCGCCTATCG < 41bp 0.373369306665209 0.729362006969569 NA NA prediction 0.458724013939138 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40431202 chr1:40431201 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_23882 0 0 0 0 1 MFSD2A chr1:40431221 5'GT 40431221 Upstream 21bp 22021 chr15 92981756 92981756 1 + G T UCEC 92981757 + 92981737 92981777 41 CTGAAGAATAAGCACTTTGGGACTTGTGCCATCGTGGGCAA CTGAAGAATAAGCACTTTGTGACTTGTGCCATCGTGGGCAA < 41bp 0.379919462877417 0.729323694249163 NA NA prediction 0.458647388498326 Functional Gain - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92981757 chr15:92981756 nonsynonymous SNV 0.912 1 20 hm7G_associated_SNPs_23884 0 0 0 0 1 ST8SIA2 chr15:92981840 5'GT 92981840 Upstream 85bp 22022 chr1 179054772 179054772 1 + G T SKCM 179054773 + 179054753 179054793 41 CTGTCCTTAGGCTTAGAGTGGGACCTGAATGTGCGGCTGCA CTGTCCTTAGGCTTAGAGTTGGACCTGAATGTGCGGCTGCA < 41bp 0.662174009039958 0.891486765427971 NA NA prediction 0.458625512776025 Functional Gain - TOR3A ENSG00000186283 CDS Human protein_coding chr1:179054773 chr1:179054772 nonsynonymous SNV 0.282 0 20 hm7G_associated_SNPs_23885 0 0 1 0 1 TOR3A chr1:179054763 3'AG 179054763 Downstream 10bp 22023 chr14 104638927 104638927 1 + G A HNSC 104638928 + 104638908 104638948 41 CTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGCTCC CTAGGCCGAAGTCTGCTCGAGGACCGTGGCCGACGTGCTCC < 41bp 0.511005019357537 0.740300499730222 NA NA prediction 0.458590960745372 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638928 chr14:104638927 nonsynonymous SNV 0.949 3 20 hm7G_associated_SNPs_23888 0 0 0 0 2 KIF26A chr14:104638912 3'AG 104638912 Downstream 16bp 22024 chr14 104638927 104638927 1 + G A HNSC 104638928 + 104638908 104638948 41 CTAGGCCGAAGTCTGCTCGGGGACCGTGGCCGACGTGCTCC CTAGGCCGAAGTCTGCTCGAGGACCGTGGCCGACGTGCTCC < 41bp 0.511005019357537 0.740300499730222 NA NA prediction 0.458590960745372 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104638928 chr14:104638927 nonsynonymous SNV 0.949 3 20 hm7G_associated_SNPs_23888 0 0 0 0 2 KIF26A chr14:104639005 5'GT 104639005 Upstream 79bp 22025 chr3 184008996 184008996 1 + G T STAD 184008997 + 184008977 184009017 41 GAGAACATTGCTGACAACGGGGGGCTGAAGGCTGCCTACAA GAGAACATTGCTGACAACGTGGGGCTGAAGGCTGCCTACAA < 41bp 0.392207706557187 0.729291370949391 NA NA prediction 0.458582741898782 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184008997 chr3:184008996 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_23889 0 0 0 0 1 ECE2 chr3:184009018 5'GT 184009018 Upstream 23bp 22026 chr9 133506945 133506945 1 + G T UCEC 133506946 + 133506926 133506966 41 CCCTCTGTGCCCCCACAGGGGACCAATCTCGGAGCACCTGG CCCTCTGTGCCCCCACAGGTGACCAATCTCGGAGCACCTGG < 41bp 0.383371163338867 0.729289958524484 NA NA prediction 0.458579917048967 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506946 chr9:133506945 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_23891 0 0 1 0 2 FUBP3 chr9:133506944 3'AG 133506944 Downstream 2bp 22027 chr9 133506945 133506945 1 + G T UCEC 133506946 + 133506926 133506966 41 CCCTCTGTGCCCCCACAGGGGACCAATCTCGGAGCACCTGG CCCTCTGTGCCCCCACAGGTGACCAATCTCGGAGCACCTGG < 41bp 0.383371163338867 0.729289958524484 NA NA prediction 0.458579917048967 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133506946 chr9:133506945 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_23891 0 0 1 0 2 FUBP3 chr9:133507017 5'GT 133507017 Upstream 73bp 22028 chr1 214454741 214454741 1 + G T LUSC 214454742 + 214454722 214454762 41 TGCTCACGGTCAACGAGCGGGGCAACCACTGCGAGTACTGC TGCTCACGGTCAACGAGCGTGGCAACCACTGCGAGTACTGC < 41bp 0.644881007177319 0.874166759820797 NA NA prediction 0.458571505286955 Functional Gain - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214454742 chr1:214454741 synonymous SNV . 0 20 hm7G_associated_SNPs_23892 0 0 1 0 1 SMYD2 chr1:214454770 5'GT 214454770 Upstream 30bp 22029 chr15 27188537 27188537 1 + G T LUAD 27188538 + 27188518 27188558 41 CCAAGAGAGGCTGGGCCTGGGATGGCAAAAAAGCCTTGGAA CCAAGAGAGGCTGGGCCTGTGATGGCAAAAAAGCCTTGGAA < 41bp 0.663971493237978 0.893255275600919 NA NA prediction 0.458567564725882 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27188538 chr15:27188537 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23893 0 0 0 0 1 GABRA5 chr15:27188573 5'GT 27188573 Upstream 37bp 22030 chr17 53345192 53345192 1 + G T LUSC 53345193 + 53345173 53345213 41 CCCCCAGTCGGCATTCCTGGGGCCTACCTTATGGGACAAAA CCCCCAGTCGGCATTCCTGTGGCCTACCTTATGGGACAAAA < 41bp 0.376341622216077 0.729258801509554 NA NA prediction 0.458517603019107 Functional Gain - HLF ENSG00000108924 CDS Human protein_coding chr17:53345193 chr17:53345192 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_23897 0 0 0 0 1 HLF chr17:53345112 3'AG 53345112 Downstream 81bp 22031 chr11 67812468 67812468 1 + G T HNSC 67812469 + 67812449 67812489 41 GCTCACCGCATCCCCTGCCGGGACATGCCCCCCACACTCAT GCTCACCGCATCCCCTGCCTGGACATGCCCCCCACACTCAT < 41bp 0.380824944974222 0.729255618744458 NA NA prediction 0.458511237488915 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67812469 chr11:67812468 nonsynonymous SNV 0.977 1 20 hm7G_associated_SNPs_23898 0 0 1 0 1 TCIRG1 chr11:67812425 3'AG 67812425 Downstream 44bp 22032 chr18 9281003 9281003 1 + G T UCEC 9281004 + 9280984 9281024 41 GCTGTCCAGAGGTTAGAATGGCAGCTCAAACTCCAGGAACT GCTGTCCAGAGGTTAGAATTGCAGCTCAAACTCCAGGAACT < 41bp 0.425605290292445 0.729250405826516 NA NA prediction 0.458500811653032 Functional Gain - ANKRD12 ENSG00000101745 CDS Human protein_coding chr18:9281004 chr18:9281003 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23899 0 0 0 0 1 ANKRD12 chr18:9280939 3'AG 9280939 Downstream 65bp 22033 chr4 99342458 99342458 1 + G T LUAD 99342459 + 99342439 99342479 41 AGTTAGTGGAGCGTTTGGTGGAATGGTGTGAAGCCAAAGAT AGTTAGTGGAGCGTTTGGTTGAATGGTGTGAAGCCAAAGAT < 41bp 0.660084388211617 0.889330661183592 NA NA prediction 0.458492545943949 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99342459 chr4:99342458 synonymous SNV . 0 20 hm7G_associated_SNPs_23902 0 0 1 0 3 RAP1GDS1 chr4:99342406 3'AG 99342406 Downstream 53bp 22034 chr4 99342458 99342458 1 + G T LUAD 99342459 + 99342439 99342479 41 AGTTAGTGGAGCGTTTGGTGGAATGGTGTGAAGCCAAAGAT AGTTAGTGGAGCGTTTGGTTGAATGGTGTGAAGCCAAAGAT < 41bp 0.660084388211617 0.889330661183592 NA NA prediction 0.458492545943949 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99342459 chr4:99342458 synonymous SNV . 0 20 hm7G_associated_SNPs_23902 0 0 1 0 3 RAP1GDS1 chr4:99342409 3'AG 99342409 Downstream 50bp 22035 chr4 99342458 99342458 1 + G T LUAD 99342459 + 99342439 99342479 41 AGTTAGTGGAGCGTTTGGTGGAATGGTGTGAAGCCAAAGAT AGTTAGTGGAGCGTTTGGTTGAATGGTGTGAAGCCAAAGAT < 41bp 0.660084388211617 0.889330661183592 NA NA prediction 0.458492545943949 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99342459 chr4:99342458 synonymous SNV . 0 20 hm7G_associated_SNPs_23902 0 0 1 0 3 RAP1GDS1 chr4:99342545 5'GT 99342545 Upstream 88bp 22036 chr18 60036668 60036668 1 + G T LUAD 60036669 + 60036649 60036689 41 GGCTCCCAAGCTCAGCGAGGGCAGGTGCCGGGTCTGGAAGC GGCTCCCAAGCTCAGCGAGTGCAGGTGCCGGGTCTGGAAGC < 41bp 0.392257253246764 0.729224365346307 NA NA prediction 0.458448730692614 Functional Gain - TNFRSF11A ENSG00000141655 CDS Human protein_coding chr18:60036669 chr18:60036668 nonsynonymous SNV 0.069 1 20 hm7G_associated_SNPs_23904 0 0 0 0 1 TNFRSF11A chr18:60036717 5'GT 60036717 Upstream 50bp 22037 chr7 148851380 148851380 1 + G T PAAD 148851381 + 148851361 148851401 41 GAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCT GAGAACCTGCTGCGCAACATGAACTTCTGGATCCTGCGGCT < 41bp 0.469851678158886 0.729213963669782 NA NA prediction 0.458427927339563 Functional Gain - ZNF398 ENSG00000197024 CDS Human protein_coding chr7:148851381 chr7:148851380 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_23905 0 0 0 0 1 ZNF398 chr7:148851432 5'GT 148851432 Upstream 53bp 22038 chr1 63307143 63307143 1 + G T CESC 63307144 + 63307124 63307164 41 AGATGTCTTTTCGAAAAATGGATCCCAGCTGTACAATAGGA AGATGTCTTTTCGAAAAATTGATCCCAGCTGTACAATAGGA < 41bp 0.646351574194842 0.875562571419143 NA NA prediction 0.458421994448601 Functional Gain - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63307144 chr1:63307143 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23906 0 0 1 0 2 ATG4C chr1:63307099 3'AG 63307099 Downstream 45bp 22039 chr1 63307143 63307143 1 + G T CESC 63307144 + 63307124 63307164 41 AGATGTCTTTTCGAAAAATGGATCCCAGCTGTACAATAGGA AGATGTCTTTTCGAAAAATTGATCCCAGCTGTACAATAGGA < 41bp 0.646351574194842 0.875562571419143 NA NA prediction 0.458421994448601 Functional Gain - ATG4C ENSG00000125703 CDS Human protein_coding chr1:63307144 chr1:63307143 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23906 0 0 1 0 2 ATG4C chr1:63307218 5'GT 63307218 Upstream 76bp 22040 chr14 74318664 74318664 1 + G T rs143512020 74318665 + 74318645 74318685 41 GGGTCAGTGACGCGCGAGCGGCTCCCGCGACTGTGGCTCCC GGGTCAGTGACGCGCGAGCTGCTCCCGCGACTGTGGCTCCC < 41bp 0.653370767294986 0.882580988829958 NA NA prediction 0.458420443069944 Functional Gain - PTGR2 ENSG00000140043 UTR5 Human protein_coding chr14:74318665 chr14:74318664 . . 0 20 hm7G_associated_SNPs_23907 0 0 1 0 2 PTGR2 chr14:74318646 3'AG 74318646 Downstream 19bp 22041 chr14 74318664 74318664 1 + G T rs143512020 74318665 + 74318645 74318685 41 GGGTCAGTGACGCGCGAGCGGCTCCCGCGACTGTGGCTCCC GGGTCAGTGACGCGCGAGCTGCTCCCGCGACTGTGGCTCCC < 41bp 0.653370767294986 0.882580988829958 NA NA prediction 0.458420443069944 Functional Gain - PTGR2 ENSG00000140043 UTR5 Human other chr14:74318665 chr14:74318664 . . 0 20 hm7G_associated_SNPs_23907 0 0 1 0 2 PTGR2 chr14:74318707 5'GT 74318707 Upstream 44bp 22042 chr11 123485468 123485468 1 + G T LUAD 123485469 + 123485449 123485489 41 ACAGGTTCCACACAGACGCGGCATATCCCGGAGGACACCCC ACAGGTTCCACACAGACGCTGCATATCCCGGAGGACACCCC < 41bp 0.673096086608057 0.902294260863438 NA NA prediction 0.458396348510762 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123485469 chr11:123485468 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_23908 0 0 0 0 2 GRAMD1B chr11:123485453 3'AG 123485453 Downstream 16bp 22043 chr11 123485468 123485468 1 + G T LUAD 123485469 + 123485449 123485489 41 ACAGGTTCCACACAGACGCGGCATATCCCGGAGGACACCCC ACAGGTTCCACACAGACGCTGCATATCCCGGAGGACACCCC < 41bp 0.673096086608057 0.902294260863438 NA NA prediction 0.458396348510762 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123485469 chr11:123485468 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_23908 0 0 0 0 2 GRAMD1B chr11:123485543 5'GT 123485543 Upstream 76bp 22044 chr16 2512523 2512523 1 + G A rs3810794 2512524 + 2512504 2512544 41 GCATGAGGGAGGAGCTCTCGGCAGGTCAGTGGGTCCTGGGT GCATGAGGGAGGAGCTCTCAGCAGGTCAGTGGGTCCTGGGT < 41bp 0.520337610840994 0.749517520162606 NA NA prediction 0.458359818643226 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2512524 chr16:2512523 synonymous SNV . 0 20 hm7G_associated_SNPs_23909 0 1 1 0 1 C16orf59 chr16:2512527 5'GT 2512527 Upstream 5bp 22045 chr2 239261825 239261825 1 + G T UCEC 239261826 + 239261806 239261846 41 CTGCTCAGGTAACAGCAGTGGAACTAGAAGAAGAGGAGAAG CTGCTCAGGTAACAGCAGTTGAACTAGAAGAAGAGGAGAAG < 41bp 0.659939349470202 0.889117508308591 NA NA prediction 0.458356317676777 Functional Gain - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239261826 chr2:239261825 synonymous SNV . 0 20 hm7G_associated_SNPs_23911 0 0 1 0 2 TRAF3IP1 chr2:239261814 3'AG 239261814 Downstream 12bp 22046 chr2 239261825 239261825 1 + G T UCEC 239261826 + 239261806 239261846 41 CTGCTCAGGTAACAGCAGTGGAACTAGAAGAAGAGGAGAAG CTGCTCAGGTAACAGCAGTTGAACTAGAAGAAGAGGAGAAG < 41bp 0.659939349470202 0.889117508308591 NA NA prediction 0.458356317676777 Functional Gain - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239261826 chr2:239261825 synonymous SNV . 0 20 hm7G_associated_SNPs_23911 0 0 1 0 2 TRAF3IP1 chr2:239261850 5'GT 239261850 Upstream 26bp 22047 chr3 53736680 53736680 1 + G T UCEC 53736681 + 53736661 53736701 41 CCTTCAGAGAATTCTCAAAGGAAAGAGAGAAGGCAAAAGCA CCTTCAGAGAATTCTCAAATGAAAGAGAGAAGGCAAAAGCA < 41bp 0.405876169248757 0.729170849978742 NA NA prediction 0.458341699957485 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53736681 chr3:53736680 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23912 0 0 0 0 1 CACNA1D chr3:53736668 3'AG 53736668 Downstream 13bp 22048 chr14 21811278 21811278 1 + G T COAD 21811279 + 21811259 21811299 41 CTGATGAGAACATAAAACAGGTGTATGTGGAGTACAAATTC CTGATGAGAACATAAAACATGTGTATGTGGAGTACAAATTC < 41bp 0.402978627577608 0.72915985676779 NA NA prediction 0.45831971353558 Functional Gain - RPGRIP1 ENSG00000092200 CDS Human protein_coding chr14:21811279 chr14:21811278 nonsynonymous SNV 0.629 4 20 hm7G_associated_SNPs_23913 0 0 0 0 1 RPGRIP1 chr14:21811195 3'AG 21811195 Downstream 84bp 22049 chr12 132636906 132636906 1 + G T ESCA 132636907 + 132636887 132636927 41 GCCCAGGGCCTGCTGGGACGGCCGGGTGAACTCTGTGCCCA GCCCAGGGCCTGCTGGGACTGCCGGGTGAACTCTGTGCCCA < 41bp 0.653937264950769 0.883086376485817 NA NA prediction 0.458298223070096 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636907 chr12:132636906 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_23915 0 0 1 0 1 NOC4L chr12:132636827 3'AG 132636827 Downstream 80bp 22050 chr2 207146627 207146627 1 + G T LUSC 207146628 + 207146608 207146648 41 GTGTGCAGTATAATAACCTGGAACAGGTGAGCGGTTTCTAT GTGTGCAGTATAATAACCTTGAACAGGTGAGCGGTTTCTAT < 41bp 0.517359378757692 0.746505457464909 NA NA prediction 0.458292157414435 Functional Gain - ZDBF2 ENSG00000204186 CDS Human protein_coding chr2:207146628 chr2:207146627 synonymous SNV . 0 20 hm7G_associated_SNPs_23916 0 0 0 0 1 ZDBF2 chr2:207146633 5'GT 207146633 Upstream 7bp 22051 chr5 128351749 128351749 1 + G T LUAD 128351750 + 128351730 128351770 41 TGGGAGAATTGGAGCAATTGGGAGAACAAATTTGTTTTACA TGGGAGAATTGGAGCAATTTGGAGAACAAATTTGTTTTACA < 41bp 0.404143098471516 0.729125117398843 NA NA prediction 0.458250234797686 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128351750 chr5:128351749 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_23917 0 0 1 0 1 SLC27A6 chr5:128351772 5'GT 128351772 Upstream 24bp 22052 chr2 26800475 26800475 1 + G T UCEC 26800476 + 26800456 26800496 41 CCCGTGAGGGAGCCGGAACGGTACCCCCTCCCCACCGTCCT CCCGTGAGGGAGCCGGAACTGTACCCCCTCCCCACCGTCCT < 41bp 0.412826034445826 0.729108098926034 NA NA prediction 0.458216197852068 Functional Gain - C2orf70 ENSG00000173557 CDS Human protein_coding chr2:26800476 chr2:26800475 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_23919 0 0 0 0 2 C2orf70 chr2:26800384 3'AG 26800384 Downstream 92bp 22053 chr2 26800475 26800475 1 + G T UCEC 26800476 + 26800456 26800496 41 CCCGTGAGGGAGCCGGAACGGTACCCCCTCCCCACCGTCCT CCCGTGAGGGAGCCGGAACTGTACCCCCTCCCCACCGTCCT < 41bp 0.412826034445826 0.729108098926034 NA NA prediction 0.458216197852068 Functional Gain - C2orf70 ENSG00000173557 CDS Human protein_coding chr2:26800476 chr2:26800475 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_23919 0 0 0 0 2 C2orf70 chr2:26800496 5'GT 26800496 Upstream 22bp 22054 chr10 95418663 95418663 1 + G T UCEC 95418664 + 95418644 95418684 41 TGTATCTTTTCTAGGAAGAGGACCATGTTTCAAAAAATTGT TGTATCTTTTCTAGGAAGATGACCATGTTTCAAAAAATTGT < 41bp 0.42280799236676 0.729099899791541 NA NA prediction 0.458199799583082 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95418664 chr10:95418663 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_23920 0 0 0 0 1 PDE6C chr10:95418658 3'AG 95418658 Downstream 6bp 22055 chr13 25264532 25264532 1 + G T UCEC 25264533 + 25264513 25264553 41 TCCCTTCAGAGCAGCTGGTGGTGGGGGACATTGTGGAGGTC TCCCTTCAGAGCAGCTGGTTGTGGGGGACATTGTGGAGGTC < 41bp 0.665913641198074 0.895008694605799 NA NA prediction 0.45819010681545 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264533 chr13:25264532 synonymous SNV . 0 20 hm7G_associated_SNPs_23921 0 0 0 0 2 ATP12A chr13:25264476 3'AG 25264476 Downstream 57bp 22056 chr13 25264532 25264532 1 + G T UCEC 25264533 + 25264513 25264553 41 TCCCTTCAGAGCAGCTGGTGGTGGGGGACATTGTGGAGGTC TCCCTTCAGAGCAGCTGGTTGTGGGGGACATTGTGGAGGTC < 41bp 0.665913641198074 0.895008694605799 NA NA prediction 0.45819010681545 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264533 chr13:25264532 synonymous SNV . 0 20 hm7G_associated_SNPs_23921 0 0 0 0 2 ATP12A chr13:25264610 5'GT 25264610 Upstream 79bp 22057 chr1 54360194 54360194 1 + G T UCEC 54360195 + 54360175 54360215 41 GTCCGCCTCTCAGGACAGAGGTGCAACATTTGGGAGTTTAT GTCCGCCTCTCAGGACAGATGTGCAACATTTGGGAGTTTAT < 41bp 0.40803939020033 0.729046763156691 NA NA prediction 0.458093526313383 Functional Gain - DIO1 ENSG00000211452 CDS Human protein_coding chr1:54360195 chr1:54360194 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_23928 0 0 0 1 1 DIO1 chr1:54360220 5'GT 54360220 Upstream 27bp 22058 chr1 247582138 247582138 1 + G T STAD 247582139 + 247582119 247582159 41 GCAAGCTGGCCAGGTACCTGGAGGACCTGGAGGATGTGGAC GCAAGCTGGCCAGGTACCTTGAGGACCTGGAGGATGTGGAC < 41bp 0.394456009780821 0.729032386744854 NA NA prediction 0.458064773489708 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247582139 chr1:247582138 synonymous SNV . 0 20 hm7G_associated_SNPs_23930 0 0 0 0 1 NLRP3 chr1:247582059 3'AG 247582059 Downstream 80bp 22059 chr21 46897362 46897362 1 + G T UCEC 46897363 + 46897343 46897383 41 CAGATTCTGTCTCCACGTGGGACGGGAGTGTCCGGACCCCT CAGATTCTGTCTCCACGTGTGACGGGAGTGTCCGGACCCCT < 41bp 0.381098759591313 0.728991750695993 NA NA prediction 0.457983501391987 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46897363 chr21:46897362 nonsynonymous SNV 0.025 2 20 hm7G_associated_SNPs_23935 0 0 1 0 2 COL18A1 chr21:46897325 3'AG 46897325 Downstream 38bp 22060 chr21 46897362 46897362 1 + G T UCEC 46897363 + 46897343 46897383 41 CAGATTCTGTCTCCACGTGGGACGGGAGTGTCCGGACCCCT CAGATTCTGTCTCCACGTGTGACGGGAGTGTCCGGACCCCT < 41bp 0.381098759591313 0.728991750695993 NA NA prediction 0.457983501391987 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46897363 chr21:46897362 nonsynonymous SNV 0.025 2 20 hm7G_associated_SNPs_23935 0 0 1 0 2 COL18A1 chr21:46897401 5'GT 46897401 Upstream 40bp 22061 chr17 30358450 30358450 1 + G T HNSC 30358451 + 30358431 30358471 41 CTTGGAACATTTCAGGCCTGGCACGGAATGCAGTTTTTACA CTTGGAACATTTCAGGCCTTGCACGGAATGCAGTTTTTACA < 41bp 0.390237294833166 0.728991296564518 NA NA prediction 0.457982593129035 Functional Gain - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30358451 chr17:30358450 nonsynonymous SNV 0.979 2 20 hm7G_associated_SNPs_23936 0 0 1 0 2 LRRC37B chr17:30358397 3'AG 30358397 Downstream 54bp 22062 chr17 30358450 30358450 1 + G T HNSC 30358451 + 30358431 30358471 41 CTTGGAACATTTCAGGCCTGGCACGGAATGCAGTTTTTACA CTTGGAACATTTCAGGCCTTGCACGGAATGCAGTTTTTACA < 41bp 0.390237294833166 0.728991296564518 NA NA prediction 0.457982593129035 Functional Gain - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30358451 chr17:30358450 nonsynonymous SNV 0.979 2 20 hm7G_associated_SNPs_23936 0 0 1 0 2 LRRC37B chr17:30358477 5'GT 30358477 Upstream 28bp 22063 chr11 64108124 64108124 1 + G A rs147780757 64108125 + 64108105 64108145 41 GGAGGCGGAGGACTCGGAGGGGGAAGAAGAGGAAGAGGAGG GGAGGCGGAGGACTCGGAGAGGGAAGAAGAGGAAGAGGAGG < 41bp 0.501635814063509 0.730623447494298 NA NA prediction 0.457975266861578 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64108125 chr11:64108124 nonsynonymous SNV 0.567 0 20 hm7G_associated_SNPs_23937 0 0 0 0 1 CCDC88B chr11:64108079 3'AG 64108079 Downstream 46bp 22064 chr11 124910534 124910534 1 + G T UCEC 124910535 + 124910515 124910555 41 AATTCCTGTGATGTCCCTGGGGGTAATTCAACTCTTCGAGT AATTCCTGTGATGTCCCTGTGGGTAATTCAACTCTTCGAGT < 41bp 0.418501585862213 0.728936464021593 NA NA prediction 0.457872928043187 Functional Gain - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124910535 chr11:124910534 nonsynonymous SNV 0.027 1 20 hm7G_associated_SNPs_23940 0 0 0 0 1 CCDC15 chr11:124910486 3'AG 124910486 Downstream 49bp 22065 chr18 23724557 23724557 1 + G T LUAD 23724558 + 23724538 23724578 41 ACCAATATAGTTGTTCTTGGGGTAGAAAAAAAATCTGTTGC ACCAATATAGTTGTTCTTGTGGTAGAAAAAAAATCTGTTGC < 41bp 0.638728894333672 0.867656623779971 NA NA prediction 0.457855458892599 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23724558 chr18:23724557 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_23941 0 0 0 0 2 PSMA8 chr18:23724523 3'AG 23724523 Downstream 35bp 22066 chr18 23724557 23724557 1 + G T LUAD 23724558 + 23724538 23724578 41 ACCAATATAGTTGTTCTTGGGGTAGAAAAAAAATCTGTTGC ACCAATATAGTTGTTCTTGTGGTAGAAAAAAAATCTGTTGC < 41bp 0.638728894333672 0.867656623779971 NA NA prediction 0.457855458892599 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23724558 chr18:23724557 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_23941 0 0 0 0 2 PSMA8 chr18:23724649 5'GT 23724649 Upstream 93bp 22067 chr2 3469400 3469400 1 + G T HNSC 3469401 + 3469381 3469421 41 CCGTGGAGGCGTATCATTCGGTTATCAAGTATTACCCAGAG CCGTGGAGGCGTATCATTCTGTTATCAAGTATTACCCAGAG < 41bp 0.391823691764205 0.728924573913436 NA NA prediction 0.457849147826872 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3469401 chr2:3469400 synonymous SNV . 0 20 hm7G_associated_SNPs_23942 0 0 1 0 2 TRAPPC12 chr2:3469368 3'AG 3469368 Downstream 33bp 22068 chr2 3469400 3469400 1 + G T HNSC 3469401 + 3469381 3469421 41 CCGTGGAGGCGTATCATTCGGTTATCAAGTATTACCCAGAG CCGTGGAGGCGTATCATTCTGTTATCAAGTATTACCCAGAG < 41bp 0.391823691764205 0.728924573913436 NA NA prediction 0.457849147826872 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3469401 chr2:3469400 synonymous SNV . 0 20 hm7G_associated_SNPs_23942 0 0 1 0 2 TRAPPC12 chr2:3469466 5'GT 3469466 Upstream 67bp 22069 chr17 1636863 1636863 1 + G T STAD 1636864 + 1636844 1636884 41 CCCAACCACGAGCTGGTTGGGGAGCTGGCGGCGCTGTACTT CCCAACCACGAGCTGGTTGTGGAGCTGGCGGCGCTGTACTT < 41bp 0.38594746568695 0.728922008023182 NA NA prediction 0.457844016046364 Functional Gain - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1636864 chr17:1636863 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23944 0 0 1 0 1 WDR81 chr17:1636821 3'AG 1636821 Downstream 43bp 22070 chr16 1552359 1552359 1 + G A LGG 1552360 + 1552340 1552380 41 CGCTGGGAGGCAGCCCTGCGGGCCCTTGAGGGCCTGGTCTA CGCTGGGAGGCAGCCCTGCAGGCCCTTGAGGGCCTGGTCTA < 41bp 0.503736068993893 0.732611764732365 NA NA prediction 0.457751391476945 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1552360 chr16:1552359 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_23948 0 0 1 0 2 TELO2 chr16:1552314 3'AG 1552314 Downstream 46bp 22071 chr16 1552359 1552359 1 + G A LGG 1552360 + 1552340 1552380 41 CGCTGGGAGGCAGCCCTGCGGGCCCTTGAGGGCCTGGTCTA CGCTGGGAGGCAGCCCTGCAGGCCCTTGAGGGCCTGGTCTA < 41bp 0.503736068993893 0.732611764732365 NA NA prediction 0.457751391476945 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1552360 chr16:1552359 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_23948 0 0 1 0 2 TELO2 chr16:1552405 5'GT 1552405 Upstream 47bp 22072 chr1 116563495 116563495 1 + G T LUSC 116563496 + 116563476 116563516 41 TGTGTGGGCACCGCCTACTGGGCACTTGCAGGTACTACTTA TGTGTGGGCACCGCCTACTTGGCACTTGCAGGTACTACTTA < 41bp 0.395227540803767 0.728873624709623 NA NA prediction 0.457747249419247 Functional Gain - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116563496 chr1:116563495 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23949 0 0 0 0 1 SLC22A15 chr1:116563506 5'GT 116563506 Upstream 12bp 22073 chrX 153691996 153691996 1 + G T THCA 153691997 + 153691977 153692017 41 CGCAGCCTGCCTGGGCTCCGGGGACCCGCACTGTGGTTGGT CGCAGCCTGCCTGGGCTCCTGGGACCCGCACTGTGGTTGGT < 41bp 0.376956284421711 0.728868418902878 NA NA prediction 0.457736837805757 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153691997 chrX:153691996 nonsynonymous SNV 0.923 4 20 hm7G_associated_SNPs_23951 0 0 1 0 2 PLXNA3 chrX:153691933 3'AG 153691933 Downstream 64bp 22074 chrX 153691996 153691996 1 + G T THCA 153691997 + 153691977 153692017 41 CGCAGCCTGCCTGGGCTCCGGGGACCCGCACTGTGGTTGGT CGCAGCCTGCCTGGGCTCCTGGGACCCGCACTGTGGTTGGT < 41bp 0.376956284421711 0.728868418902878 NA NA prediction 0.457736837805757 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153691997 chrX:153691996 nonsynonymous SNV 0.923 4 20 hm7G_associated_SNPs_23951 0 0 1 0 2 PLXNA3 chrX:153692033 5'GT 153692033 Upstream 38bp 22075 chr7 107353040 107353040 1 + G T LUSC 107353041 + 107353021 107353061 41 TAATAGAAACAGAGCTGACGGAAGAAGAACTTGATGTCCAG TAATAGAAACAGAGCTGACTGAAGAAGAACTTGATGTCCAG < 41bp 0.645437820854575 0.874305069182369 NA NA prediction 0.457734496655588 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107353041 chr7:107353040 synonymous SNV . 0 20 hm7G_associated_SNPs_23952 0 0 0 0 2 SLC26A4 chr7:107352984 3'AG 107352984 Downstream 57bp 22076 chr7 107353040 107353040 1 + G T LUSC 107353041 + 107353021 107353061 41 TAATAGAAACAGAGCTGACGGAAGAAGAACTTGATGTCCAG TAATAGAAACAGAGCTGACTGAAGAAGAACTTGATGTCCAG < 41bp 0.645437820854575 0.874305069182369 NA NA prediction 0.457734496655588 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107353041 chr7:107353040 synonymous SNV . 0 20 hm7G_associated_SNPs_23952 0 0 0 0 2 SLC26A4 chr7:107353067 5'GT 107353067 Upstream 28bp 22077 chr16 89949799 89949799 1 + G T LUSC 89949800 + 89949780 89949820 41 GATGACCCTGTGGTGAACGGGGAGAGGTCTGGCTGTGCGCT GATGACCCTGTGGTGAACGTGGAGAGGTCTGGCTGTGCGCT < 41bp 0.669106652562057 0.897951167878158 NA NA prediction 0.457689030632203 Functional Gain - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89949800 chr16:89949799 nonsynonymous SNV 0.685 3 20 hm7G_associated_SNPs_23954 0 0 1 0 1 TCF25 chr16:89949759 3'AG 89949759 Downstream 41bp 22078 chr11 44931258 44931258 1 + G A OV 44931259 + 44931239 44931279 41 TCCACTGGCCCGAGCAGCTGGGCGGGGCCTGCCTGCTGGCC TCCACTGGCCCGAGCAGCTAGGCGGGGCCTGCCTGCTGGCC < 41bp 0.511122967792301 0.739964255449641 NA NA prediction 0.45768257531468 Functional Gain - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44931259 chr11:44931258 synonymous SNV . 0 20 hm7G_associated_SNPs_23955 0 0 0 0 1 TSPAN18 chr11:44931256 3'AG 44931256 Downstream 3bp 22079 chr1 41204589 41204589 1 + G T UCEC 41204590 + 41204570 41204610 41 CTACAGTCGTTCTGGCCTCGGGTCATGGAAGAAATCCGGAA CTACAGTCGTTCTGGCCTCTGGTCATGGAAGAAATCCGGAA < 41bp 0.661747373288233 0.890586251092113 NA NA prediction 0.45767775560776 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41204590 chr1:41204589 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_23956 0 0 1 0 1 NFYC chr1:41204620 5'GT 41204620 Upstream 32bp 22080 chr1 11718369 11718369 1 + G T KIRC 11718370 + 11718350 11718390 41 GTGAATGGAGGCGATGAGTGGAAGGTGGAGGATCTCTCTCG GTGAATGGAGGCGATGAGTTGAAGGTGGAGGATCTCTCTCG < 41bp 0.668790191433449 0.897618982086074 NA NA prediction 0.45765758130525 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718370 chr1:11718369 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_23958 0 0 1 0 3 FBXO44 chr1:11718324 3'AG 11718324 Downstream 46bp 22081 chr1 11718369 11718369 1 + G T KIRC 11718370 + 11718350 11718390 41 GTGAATGGAGGCGATGAGTGGAAGGTGGAGGATCTCTCTCG GTGAATGGAGGCGATGAGTTGAAGGTGGAGGATCTCTCTCG < 41bp 0.668790191433449 0.897618982086074 NA NA prediction 0.45765758130525 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718370 chr1:11718369 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_23958 0 0 1 0 3 FBXO44 chr1:11718421 5'GT 11718421 Upstream 53bp 22082 chr1 11718369 11718369 1 + G T KIRC 11718370 + 11718350 11718390 41 GTGAATGGAGGCGATGAGTGGAAGGTGGAGGATCTCTCTCG GTGAATGGAGGCGATGAGTTGAAGGTGGAGGATCTCTCTCG < 41bp 0.668790191433449 0.897618982086074 NA NA prediction 0.45765758130525 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718370 chr1:11718369 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_23958 0 0 1 0 3 FBXO44 chr1:11718450 5'GT 11718450 Upstream 82bp 22083 chr7 64531294 64531294 1 + G T UCEC 64531295 + 64531275 64531315 41 CCCATCCAACAGGCTGTGTGGTTCCGGGTGCTGGTGCTGTG CCCATCCAACAGGCTGTGTTGTTCCGGGTGCTGGTGCTGTG < 41bp 0.628725610057723 0.857542089603401 NA NA prediction 0.457632959091355 Functional Gain - CCT6P3 ENSG00000234585 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:64531295 chr7:64531294 . . 0 20 hm7G_associated_SNPs_23960 0 0 1 0 1 CCT6P3 chr7:64531287 3'AG 64531287 Downstream 8bp 22084 chr16 2577787 2577787 1 + G T STAD 2577788 + 2577768 2577808 41 TCCCAGGGCTGCACCTGGAGGGCCCCTTCATCAGCCGGGAG TCCCAGGGCTGCACCTGGATGGCCCCTTCATCAGCCGGGAG < 41bp 0.377702505437611 0.728812701282033 NA NA prediction 0.457625402564066 Functional Gain - AMDHD2 ENSG00000162066;ENSG00000259784 CDS Human other chr16:2577788 chr16:2577787 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_23961 0 0 1 0 1 AMDHD2 chr16:2577774 3'AG 2577774 Downstream 14bp 22085 chr12 57963420 57963420 1 + G T STAD 57963421 + 57963401 57963441 41 AGAAGACAAAGGCCCAGAAGGAGACGATTGCGAAGCTGGAG AGAAGACAAAGGCCCAGAATGAGACGATTGCGAAGCTGGAG < 41bp 0.672062786245525 0.90085025143165 NA NA prediction 0.45757493037225 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57963421 chr12:57963420 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_23964 0 0 1 0 1 KIF5A chr12:57963466 5'GT 57963466 Upstream 47bp 22086 chr17 78195443 78195443 1 + G A STAD 78195444 + 78195424 78195464 41 CCTGCTGCTGCTCCCCTGCGGCCCTGCAGAGGAGGCTGCCC CCTGCTGCTGCTCCCCTGCAGCCCTGCAGAGGAGGCTGCCC < 41bp 0.522404751734949 0.751174038631175 NA NA prediction 0.457538573792453 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78195444 chr17:78195443 synonymous SNV . 0 20 hm7G_associated_SNPs_23967 0 0 1 0 1 SLC26A11 chr17:78195347 3'AG 78195347 Downstream 97bp 22087 chr17 41001160 41001160 1 + G T LUSC 41001161 + 41001141 41001181 41 AAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCTACA AAACCTGTGGCTGCCCCCTTGAACCCGGAGCACTGGCTACA < 41bp 0.668518085198541 0.897287297814283 NA NA prediction 0.457538425231485 Functional Gain - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001161 chr17:41001160 nonsynonymous SNV 0.497 4 20 hm7G_associated_SNPs_23968 0 0 1 0 1 AOC2 chr17:41001103 3'AG 41001103 Downstream 58bp 22088 chr6 31975061 31975061 1 + G T UCEC 31975062 + 31975042 31975082 41 GCAGGAGAGCCTGGTGGCAGGCCAGTGGAGGGACATGATGG GCAGGAGAGCCTGGTGGCATGCCAGTGGAGGGACATGATGG < 41bp 0.419522098025876 0.728758760837758 NA NA prediction 0.457517521675517 Functional Gain - CYP21A2 ENSG00000204338 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr6:31975062 chr6:31975061 . . 0 20 hm7G_associated_SNPs_23970 0 0 1 0 1 CYP21A2 chr6:31975046 3'AG 31975046 Downstream 16bp 22089 chr22 17976588 17976588 1 + G T SKCM 17976589 + 17976569 17976609 41 GACTCTGTGATTACCGGCTGGATGCAGACGATGTCTTCGAT GACTCTGTGATTACCGGCTTGATGCAGACGATGTCTTCGAT < 41bp 0.601103973329025 0.829845123556856 NA NA prediction 0.457482300455661 Functional Gain - CECR2 ENSG00000099954 CDS Human protein_coding chr22:17976589 chr22:17976588 synonymous SNV . 0 20 hm7G_associated_SNPs_23973 0 0 0 0 1 CECR2 chr22:17976618 5'GT 17976618 Upstream 31bp 22090 chr9 139751852 139751852 1 + G A UCEC 139751853 + 139751833 139751873 41 CCTCCGGGACGGATACCACGGCACCATGGCGCTGGACGATG CCTCCGGGACGGATACCACAGCACCATGGCGCTGGACGATG < 41bp 0.495243321837766 0.728736444776641 NA NA prediction 0.457472889553281 Functional Gain - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751853 chr9:139751852 nonsynonymous SNV 0.868 3 20 hm7G_associated_SNPs_23975 0 0 1 0 1 MAMDC4 chr9:139751819 3'AG 139751819 Downstream 34bp 22091 chr17 26818576 26818576 1 + G A LUSC 26818577 + 26818557 26818597 41 GCTACTCCGCCAGCATCGGGGGCATCGCCACGCTGACTGGC GCTACTCCGCCAGCATCGGAGGCATCGCCACGCTGACTGGC < 41bp 0.498147836779025 0.7287079005521 NA NA prediction 0.457415801104199 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26818577 chr17:26818576 synonymous SNV . 0 20 hm7G_associated_SNPs_23976 0 0 0 0 1 SLC13A2 chr17:26818635 5'GT 26818635 Upstream 60bp 22092 chr19 19431920 19431920 1 + G T COAD 19431921 + 19431901 19431941 41 ACACCAAGAACAGCGAGCAGGCGCGCAGCCACCTGGAGAAG ACACCAAGAACAGCGAGCATGCGCGCAGCCACCTGGAGAAG < 41bp 0.389342600042799 0.728704615467984 NA NA prediction 0.457409230935969 Functional Gain - MAU2 ENSG00000129933 CDS Human protein_coding chr19:19431921 chr19:19431920 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_23977 0 0 0 0 1 MAU2 chr19:19431944 5'GT 19431944 Upstream 25bp 22093 chr1 155182238 155182238 1 + G T UCEC 155182239 + 155182219 155182259 41 CCCGGAAGTGGTATGCAGAGGCTATGCCCTTTCCCCTCAAC CCCGGAAGTGGTATGCAGATGCTATGCCCTTTCCCCTCAAC < 41bp 0.369961064985638 0.728676404549207 NA NA prediction 0.457352809098414 Functional Gain - MTX1 ENSG00000173171 CDS Human protein_coding chr1:155182239 chr1:155182238 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23979 0 0 0 0 1 MTX1 chr1:155182176 3'AG 155182176 Downstream 63bp 22094 chr19 16623860 16623860 1 + G T UCEC 16623861 + 16623841 16623881 41 CATGGGGCCTGCCCTGGGAGGCGCCTACGTGGACCCGACAC CATGGGGCCTGCCCTGGGATGCGCCTACGTGGACCCGACAC < 41bp 0.375717476403411 0.72865365231152 NA NA prediction 0.45730730462304 Functional Gain - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16623861 chr19:16623860 nonsynonymous SNV 0.442 3 20 hm7G_associated_SNPs_23980 0 0 1 0 2 C19orf44 chr19:16623825 3'AG 16623825 Downstream 36bp 22095 chr19 16623860 16623860 1 + G T UCEC 16623861 + 16623841 16623881 41 CATGGGGCCTGCCCTGGGAGGCGCCTACGTGGACCCGACAC CATGGGGCCTGCCCTGGGATGCGCCTACGTGGACCCGACAC < 41bp 0.375717476403411 0.72865365231152 NA NA prediction 0.45730730462304 Functional Gain - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16623861 chr19:16623860 nonsynonymous SNV 0.442 3 20 hm7G_associated_SNPs_23980 0 0 1 0 2 C19orf44 chr19:16623920 5'GT 16623920 Upstream 61bp 22096 chr6 163483273 163483273 1 + G T ESCA 163483274 + 163483254 163483294 41 CCCTATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCT CCCTATGAGTTTTTTGCTCTGCAAGGAATCCACGACATGCT < 41bp 0.423648683211295 0.728649744590511 NA NA prediction 0.457299489181023 Functional Gain - PACRG ENSG00000112530 CDS Human protein_coding chr6:163483274 chr6:163483273 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23981 0 0 0 0 2 PACRG chr6:163483182 3'AG 163483182 Downstream 92bp 22097 chr6 163483273 163483273 1 + G T ESCA 163483274 + 163483254 163483294 41 CCCTATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCT CCCTATGAGTTTTTTGCTCTGCAAGGAATCCACGACATGCT < 41bp 0.423648683211295 0.728649744590511 NA NA prediction 0.457299489181023 Functional Gain - PACRG ENSG00000112530 CDS Human protein_coding chr6:163483274 chr6:163483273 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23981 0 0 0 0 2 PACRG chr6:163483353 5'GT 163483353 Upstream 81bp 22098 chr3 158178785 158178785 1 + G T UCEC 158178786 + 158178766 158178806 41 AAGAAGCAAAGAGAAGAAAGGAGGAAGGTAAAGGCATGTGT AAGAAGCAAAGAGAAGAAATGAGGAAGGTAAAGGCATGTGT < 41bp 0.631234623519807 0.859865891246386 NA NA prediction 0.457262535453158 Functional Gain - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158178786 chr3:158178785 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_23985 0 0 1 0 2 RSRC1 chr3:158178724 3'AG 158178724 Downstream 62bp 22099 chr3 158178785 158178785 1 + G T UCEC 158178786 + 158178766 158178806 41 AAGAAGCAAAGAGAAGAAAGGAGGAAGGTAAAGGCATGTGT AAGAAGCAAAGAGAAGAAATGAGGAAGGTAAAGGCATGTGT < 41bp 0.631234623519807 0.859865891246386 NA NA prediction 0.457262535453158 Functional Gain - RSRC1 ENSG00000174891 CDS Human protein_coding chr3:158178786 chr3:158178785 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_23985 0 0 1 0 2 RSRC1 chr3:158178792 5'GT 158178792 Upstream 8bp 22100 chr13 103289511 103289511 1 + G T LUAD 103289512 + 103289492 103289532 41 TTCAGTGTCCCAGCCATTTGGAACTCATGAATCAATGTAGA TTCAGTGTCCCAGCCATTTTGAACTCATGAATCAATGTAGA < 41bp 0.396121079658833 0.728629933981432 NA NA prediction 0.457259867962865 Functional Gain - TPP2 ENSG00000134900 CDS Human protein_coding chr13:103289512 chr13:103289511 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23986 0 0 1 0 2 TPP2 chr13:103289432 3'AG 103289432 Downstream 80bp 22101 chr13 103289511 103289511 1 + G T LUAD 103289512 + 103289492 103289532 41 TTCAGTGTCCCAGCCATTTGGAACTCATGAATCAATGTAGA TTCAGTGTCCCAGCCATTTTGAACTCATGAATCAATGTAGA < 41bp 0.396121079658833 0.728629933981432 NA NA prediction 0.457259867962865 Functional Gain - TPP2 ENSG00000134900 CDS Human protein_coding chr13:103289512 chr13:103289511 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_23986 0 0 1 0 2 TPP2 chr13:103289589 5'GT 103289589 Upstream 79bp 22102 chr20 2575566 2575566 1 + G T LUAD 2575567 + 2575547 2575587 41 TGCCTATGGCTTACTTTATGGTGGGGGTCAGCGTGTTCGGC TGCCTATGGCTTACTTTATTGTGGGGGTCAGCGTGTTCGGC < 41bp 0.390955892278562 0.728572806669526 NA NA prediction 0.457145613339052 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2575567 chr20:2575566 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23987 0 0 0 0 2 TMC2 chr20:2575471 3'AG 2575471 Downstream 96bp 22103 chr20 2575566 2575566 1 + G T LUAD 2575567 + 2575547 2575587 41 TGCCTATGGCTTACTTTATGGTGGGGGTCAGCGTGTTCGGC TGCCTATGGCTTACTTTATTGTGGGGGTCAGCGTGTTCGGC < 41bp 0.390955892278562 0.728572806669526 NA NA prediction 0.457145613339052 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2575567 chr20:2575566 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_23987 0 0 0 0 2 TMC2 chr20:2575613 5'GT 2575613 Upstream 48bp 22104 chr2 27888109 27888109 1 + G T UCEC 27888110 + 27888090 27888130 41 GAAATGGATACCTCTGAAAGGAAGATAAATGCTGGTAGCCA GAAATGGATACCTCTGAAATGAAGATAAATGCTGGTAGCCA < 41bp 0.659128367784953 0.887699619563176 NA NA prediction 0.457142503556446 Functional Gain - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27888110 chr2:27888109 nonsynonymous SNV 0.856 1 20 hm7G_associated_SNPs_23988 0 0 1 0 1 SLC4A1AP chr2:27888162 5'GT 27888162 Upstream 54bp 22105 chrX 48123240 48123240 1 + G T UCEC 48123241 + 48123221 48123261 41 TGCCCAAGAAGCCAGCAGAGGACGAAAATGATTCGAAGGGA TGCCCAAGAAGCCAGCAGATGACGAAAATGATTCGAAGGGA < 41bp 0.648364659205179 0.876935516327174 NA NA prediction 0.45714171424399 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48123241 chrX:48123240 nonsynonymous SNV 0.011 1 20 hm7G_associated_SNPs_23989 0 0 1 0 1 SSX1 chrX:48123217 3'AG 48123217 Downstream 24bp 22106 chrX 57358231 57358231 1 + G T SKCM 57358232 + 57358212 57358252 41 TTTACAGCATATTGTAGGTGGAAGTTCTGGTGAGTTGGACA TTTACAGCATATTGTAGGTTGAAGTTCTGGTGAGTTGGACA < 41bp 0.402356574151898 0.728561140937668 NA NA prediction 0.457122281875336 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57358232 chrX:57358231 stopgain 0.989 0 20 hm7G_associated_SNPs_23991 0 0 0 0 1 FAAH2 chrX:57358240 5'GT 57358240 Upstream 10bp 22107 chr16 57713142 57713142 1 + G T THCA 57713143 + 57713123 57713163 41 TGTTGAACAATCGCCTGGTGGGTTTGAGTGTGGGACAAATG TGTTGAACAATCGCCTGGTTGGTTTGAGTGTGGGACAAATG < 41bp 0.674813651966267 0.903374616100121 NA NA prediction 0.457121928267708 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57713143 chr16:57713142 synonymous SNV . 0 20 hm7G_associated_SNPs_23992 0 0 0 0 2 ADGRG3 chr16:57713089 3'AG 57713089 Downstream 54bp 22108 chr16 57713142 57713142 1 + G T THCA 57713143 + 57713123 57713163 41 TGTTGAACAATCGCCTGGTGGGTTTGAGTGTGGGACAAATG TGTTGAACAATCGCCTGGTTGGTTTGAGTGTGGGACAAATG < 41bp 0.674813651966267 0.903374616100121 NA NA prediction 0.457121928267708 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57713143 chr16:57713142 synonymous SNV . 0 20 hm7G_associated_SNPs_23992 0 0 0 0 2 ADGRG3 chr16:57713223 5'GT 57713223 Upstream 82bp 22109 chr7 98589833 98589833 1 + G T LUAD 98589834 + 98589814 98589854 41 ACCCTGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTAC ACCCTGAAAATAGAACAGCTGGAACGCTACAAGAGCGGTAC < 41bp 0.405913737964684 0.728556108252233 NA NA prediction 0.457112216504466 Functional Gain - TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589834 chr7:98589833 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23993 0 0 0 0 2 TRRAP chr7:98589760 3'AG 98589760 Downstream 74bp 22110 chr7 98589833 98589833 1 + G T LUAD 98589834 + 98589814 98589854 41 ACCCTGAAAATAGAACAGCGGGAACGCTACAAGAGCGGTAC ACCCTGAAAATAGAACAGCTGGAACGCTACAAGAGCGGTAC < 41bp 0.405913737964684 0.728556108252233 NA NA prediction 0.457112216504466 Functional Gain - TRRAP ENSG00000196367 CDS Human protein_coding chr7:98589834 chr7:98589833 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_23993 0 0 0 0 2 TRRAP chr7:98589850 5'GT 98589850 Upstream 18bp 22111 chr12 107075814 107075814 1 + G T LUAD 107075815 + 107075795 107075835 41 TTAACCACCAGAAGACTCGGGACCCGAGGACAGTCAAAGTA TTAACCACCAGAAGACTCGTGACCCGAGGACAGTCAAAGTA < 41bp 0.392813450928679 0.728555790996367 NA NA prediction 0.457111581992734 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107075815 chr12:107075814 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23994 0 0 0 0 2 RFX4 chr12:107075771 3'AG 107075771 Downstream 44bp 22112 chr12 107075814 107075814 1 + G T LUAD 107075815 + 107075795 107075835 41 TTAACCACCAGAAGACTCGGGACCCGAGGACAGTCAAAGTA TTAACCACCAGAAGACTCGTGACCCGAGGACAGTCAAAGTA < 41bp 0.392813450928679 0.728555790996367 NA NA prediction 0.457111581992734 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107075815 chr12:107075814 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_23994 0 0 0 0 2 RFX4 chr12:107075832 5'GT 107075832 Upstream 19bp 22113 chr17 4711169 4711169 1 + G T UCEC 4711170 + 4711150 4711190 41 ACACCCTGAAGGAGGGAGAGGACCCAGGTACACAGGGAAGA ACACCCTGAAGGAGGGAGATGACCCAGGTACACAGGGAAGA < 41bp 0.668887961080872 0.897411375739294 NA NA prediction 0.457046829316842 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4711170 chr17:4711169 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_23996 0 0 1 0 1 PLD2 chr17:4711176 5'GT 4711176 Upstream 8bp 22114 chr14 100118631 100118631 1 + G T LUAD 100118632 + 100118612 100118652 41 CCCCTGCGCACGGTGCCCGGGCTCTGCCAGGATTACTGCCT CCCCTGCGCACGGTGCCCGTGCTCTGCCAGGATTACTGCCT < 41bp 0.371444677001241 0.728515225911889 NA NA prediction 0.457030451823778 Functional Gain - HHIPL1 ENSG00000182218 CDS Human protein_coding chr14:100118632 chr14:100118631 nonsynonymous SNV 0.556 4 20 hm7G_associated_SNPs_23997 0 0 0 0 1 HHIPL1 chr14:100118561 3'AG 100118561 Downstream 71bp 22115 chr5 76621413 76621413 1 + G T LUAD 76621414 + 76621394 76621434 41 CAGAGCGATGGCTTCTGGTGGGCCTGCGACAGAGCTGGTTA CAGAGCGATGGCTTCTGGTTGGCCTGCGACAGAGCTGGTTA < 41bp 0.383262918244739 0.728504238830776 NA NA prediction 0.457008477661553 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76621414 chr5:76621413 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24001 0 0 0 0 1 PDE8B chr5:76621364 3'AG 76621364 Downstream 50bp 22116 chr3 197707242 197707242 1 + G T LUSC 197707243 + 197707223 197707263 41 GTGGCCTCATGGAGCAGTGGGTGTGCCAGACCAAGAAGGCA GTGGCCTCATGGAGCAGTGTGTGTGCCAGACCAAGAAGGCA < 41bp 0.389163196813639 0.728500146912785 NA NA prediction 0.457000293825571 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197707243 chr3:197707242 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_24003 0 0 1 0 1 LMLN chr3:197707197 3'AG 197707197 Downstream 46bp 22117 chr5 5303392 5303392 1 + G T STAD 5303393 + 5303373 5303413 41 CTGCCCAGCTGGTCCGTGGGGAACTGGAGTGCCTGCAGTCG CTGCCCAGCTGGTCCGTGGTGAACTGGAGTGCCTGCAGTCG < 41bp 0.386465838395636 0.728492536239326 NA NA prediction 0.456985072478651 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303393 chr5:5303392 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_24004 0 0 0 0 1 ADAMTS16 chr5:5303381 3'AG 5303381 Downstream 12bp 22118 chr1 175087877 175087877 1 + G T LUAD 175087878 + 175087858 175087898 41 ACTGTCCTGACGGGCCTGAGGCCGGGCATGGAGTACACGGT ACTGTCCTGACGGGCCTGATGCCGGGCATGGAGTACACGGT < 41bp 0.669081227800142 0.897572013800652 NA NA prediction 0.456981572001019 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175087878 chr1:175087877 nonsynonymous SNV 0.480 3 20 hm7G_associated_SNPs_24005 0 0 0 0 1 TNN chr1:175087960 5'GT 175087960 Upstream 84bp 22119 chr4 17841754 17841754 1 + G T UCEC 17841755 + 17841735 17841775 41 CAAGATTCAGTTAGAAAAAGGAAATAAAGAATTTGGTGACC CAAGATTCAGTTAGAAAAATGAAATAAAGAATTTGGTGACC < 41bp 0.650845025071954 0.879332016609704 NA NA prediction 0.4569739830755 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17841755 chr4:17841754 stopgain 0.995 0 20 hm7G_associated_SNPs_24006 0 0 1 0 2 NCAPG chr4:17841694 3'AG 17841694 Downstream 61bp 22120 chr4 17841754 17841754 1 + G T UCEC 17841755 + 17841735 17841775 41 CAAGATTCAGTTAGAAAAAGGAAATAAAGAATTTGGTGACC CAAGATTCAGTTAGAAAAATGAAATAAAGAATTTGGTGACC < 41bp 0.650845025071954 0.879332016609704 NA NA prediction 0.4569739830755 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17841755 chr4:17841754 stopgain 0.995 0 20 hm7G_associated_SNPs_24006 0 0 1 0 2 NCAPG chr4:17841832 5'GT 17841832 Upstream 79bp 22121 chr7 23213686 23213686 1 + G T LUAD 23213687 + 23213667 23213707 41 AGTTGAACGAATGGAAGATGGTCTCACCAATGCCATGGAAG AGTTGAACGAATGGAAGATTGTCTCACCAATGCCATGGAAG < 41bp 0.414278355135766 0.728477705640742 NA NA prediction 0.456955411281485 Functional Gain - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23213687 chr7:23213686 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24008 0 0 1 0 1 KLHL7 chr7:23213634 3'AG 23213634 Downstream 53bp 22122 chr11 75439123 75439123 1 + G T UCEC 75439124 + 75439104 75439144 41 CAGGAGGCCCTGGATGCCAGGCCTGGATCCTTCACGCTGTT CAGGAGGCCCTGGATGCCATGCCTGGATCCTTCACGCTGTT < 41bp 0.391885162082171 0.728469816228076 NA NA prediction 0.456939632456151 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75439124 chr11:75439123 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_24009 0 0 0 0 1 MOGAT2 chr11:75439189 5'GT 75439189 Upstream 67bp 22123 chr1 201858136 201858136 1 + G T rs558311484 201858137 + 201858117 201858157 41 CCCACCATGCCACCCGCGGGGCTCCGCCGGGCCGCGCCGCT CCCACCATGCCACCCGCGGTGCTCCGCCGGGCCGCGCCGCT < 41bp 0.658832870380695 0.887285144940536 NA NA prediction 0.456904549119682 Functional Gain - SHISA4 ENSG00000198892 CDS Human protein_coding chr1:201858137 chr1:201858136 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_24010 0 0 0 0 1 SHISA4 chr1:201858195 5'GT 201858195 Upstream 60bp 22124 chr6 111208777 111208777 1 + G T STAD 111208778 + 111208758 111208798 41 TGACAAAAACTGACAAGCAGGAAGCTTATGTACTCAGGTAA TGACAAAAACTGACAAGCATGAAGCTTATGTACTCAGGTAA < 41bp 0.405404695818849 0.728445929662642 NA NA prediction 0.456891859325283 Functional Gain - AMD1 ENSG00000123505 CDS Human protein_coding chr6:111208778 chr6:111208777 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24011 0 0 1 0 2 AMD1 chr6:111208708 3'AG 111208708 Downstream 70bp 22125 chr6 111208777 111208777 1 + G T STAD 111208778 + 111208758 111208798 41 TGACAAAAACTGACAAGCAGGAAGCTTATGTACTCAGGTAA TGACAAAAACTGACAAGCATGAAGCTTATGTACTCAGGTAA < 41bp 0.405404695818849 0.728445929662642 NA NA prediction 0.456891859325283 Functional Gain - AMD1 ENSG00000123505 CDS Human protein_coding chr6:111208778 chr6:111208777 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24011 0 0 1 0 2 AMD1 chr6:111208794 5'GT 111208794 Upstream 18bp 22126 chr12 44166789 44166789 1 + G T ESCA 44166790 + 44166770 44166810 41 ACGACCCATTTCTGTTGGTGGTAATAAAATGGGAGAGGGAG ACGACCCATTTCTGTTGGTTGTAATAAAATGGGAGAGGGAG < 41bp 0.654139747155816 0.882583864133916 NA NA prediction 0.456888233956199 Functional Gain - IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166790 chr12:44166789 nonsynonymous SNV 0.850 4 20 hm7G_associated_SNPs_24012 0 0 1 0 2 IRAK4 chr12:44166715 3'AG 44166715 Downstream 75bp 22127 chr12 44166789 44166789 1 + G T ESCA 44166790 + 44166770 44166810 41 ACGACCCATTTCTGTTGGTGGTAATAAAATGGGAGAGGGAG ACGACCCATTTCTGTTGGTTGTAATAAAATGGGAGAGGGAG < 41bp 0.654139747155816 0.882583864133916 NA NA prediction 0.456888233956199 Functional Gain - IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44166790 chr12:44166789 nonsynonymous SNV 0.850 4 20 hm7G_associated_SNPs_24012 0 0 1 0 2 IRAK4 chr12:44166875 5'GT 44166875 Upstream 87bp 22128 chr19 14030737 14030737 1 + G T PRAD 14030738 + 14030718 14030758 41 ACCAGGATGAAGGCCCAGAGGATGAAGAGGATGAGGTGCCT ACCAGGATGAAGGCCCAGATGATGAAGAGGATGAGGTGCCT < 41bp 0.670229926417768 0.89863968838978 NA NA prediction 0.456819523944024 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14030738 chr19:14030737 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_24016 0 0 1 0 1 CC2D1A chr19:14030764 5'GT 14030764 Upstream 28bp 22129 chr3 142757044 142757044 1 + G T UCEC 142757045 + 142757025 142757065 41 AATCTGAATTGGAAGCACAGGGTGAGTAAAAGTAAAATAAA AATCTGAATTGGAAGCACATGGTGAGTAAAAGTAAAATAAA < 41bp 0.424388980413494 0.72840222655639 NA NA prediction 0.456804453112779 Functional Gain - U2SURP ENSG00000163714 CDS Human protein_coding chr3:142757045 chr3:142757044 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24018 0 0 1 0 1 U2SURP chr3:142756950 3'AG 142756950 Downstream 95bp 22130 chr3 100021021 100021021 1 + G T LIHC 100021022 + 100021002 100021042 41 GGGAGCACCTCTGTTTTATGGGCAGTGGCAGGGAGGAAGAA GGGAGCACCTCTGTTTTATTGGCAGTGGCAGGGAGGAAGAA < 41bp 0.666405146994531 0.894790231437433 NA NA prediction 0.456770168885803 Functional Gain - TBC1D23 ENSG00000036054 CDS Human protein_coding chr3:100021022 chr3:100021021 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24020 0 0 1 0 1 TBC1D23 chr3:100021081 5'GT 100021081 Upstream 61bp 22131 chr3 108380773 108380773 1 + G T LUSC 108380774 + 108380754 108380794 41 GGAGAAACTGAAAAGGAAAGGCTTGCTCGTCAAAGGCAGCT GGAGAAACTGAAAAGGAAATGCTTGCTCGTCAAAGGCAGCT < 41bp 0.398761736950156 0.728381828247604 NA NA prediction 0.456763656495207 Functional Gain - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108380774 chr3:108380773 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_24021 0 0 1 0 2 DZIP3 chr3:108380724 3'AG 108380724 Downstream 50bp 22132 chr3 108380773 108380773 1 + G T LUSC 108380774 + 108380754 108380794 41 GGAGAAACTGAAAAGGAAAGGCTTGCTCGTCAAAGGCAGCT GGAGAAACTGAAAAGGAAATGCTTGCTCGTCAAAGGCAGCT < 41bp 0.398761736950156 0.728381828247604 NA NA prediction 0.456763656495207 Functional Gain - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108380774 chr3:108380773 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_24021 0 0 1 0 2 DZIP3 chr3:108380819 5'GT 108380819 Upstream 47bp 22133 chr22 38318078 38318078 1 + G A UCEC 38318079 + 38318059 38318099 41 ACTGTGCCAGGCTGGGCCCGGGGACACGGTCGGGGACCAGG ACTGTGCCAGGCTGGGCCCAGGGACACGGTCGGGGACCAGG < 41bp 0.501166906840557 0.729541188562138 NA NA prediction 0.456748563443161 Functional Gain - MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38318079 chr22:38318078 synonymous SNV . 0 20 hm7G_associated_SNPs_24025 0 0 1 0 1 MICALL1 chr22:38317979 3'AG 38317979 Downstream 100bp 22134 chrX 70597477 70597477 1 + G T LUSC 70597478 + 70597458 70597498 41 ACGTTTTCTACGTCTTTTTGGACCAGGGAAGAATGTCCCAT ACGTTTTCTACGTCTTTTTTGACCAGGGAAGAATGTCCCAT < 41bp 0.395802379744819 0.728368808463709 NA NA prediction 0.456737616927418 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70597478 chrX:70597477 stopgain 1.000 1 20 hm7G_associated_SNPs_24027 0 0 1 0 1 TAF1 chrX:70597453 3'AG 70597453 Downstream 25bp 22135 chr10 73046466 73046466 1 + G T UCEC 73046467 + 73046447 73046487 41 TGGAATGGCTCAAGAATGAGGATGTCATCGACCCCACCCAG TGGAATGGCTCAAGAATGATGATGTCATCGACCCCACCCAG < 41bp 0.374646239388261 0.728355159056908 NA NA prediction 0.456710318113816 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73046467 chr10:73046466 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_24030 0 0 1 0 1 UNC5B chr10:73046446 3'AG 73046446 Downstream 21bp 22136 chr2 71365756 71365756 1 + G T LUSC 71365757 + 71365737 71365777 41 CACTTTGACCATGCTGTCCGGATGGGTATGGTGCCCTCTTC CACTTTGACCATGCTGTCCTGATGGGTATGGTGCCCTCTTC < 41bp 0.658744195145091 0.887095387687199 NA NA prediction 0.456702385084217 Functional Gain - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71365757 chr2:71365756 nonsynonymous SNV 0.062 4 20 hm7G_associated_SNPs_24032 0 0 1 0 1 MPHOSPH10 chr2:71365761 5'GT 71365761 Upstream 6bp 22137 chr1 41284193 41284193 1 + G T COAD 41284194 + 41284174 41284214 41 CAGACTTCATCGTGTTCGTGGCCTCGGTGGCCGTCATCGCC CAGACTTCATCGTGTTCGTTGCCTCGGTGGCCGTCATCGCC < 41bp 0.374490408593602 0.728344986877438 NA NA prediction 0.456689973754876 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41284194 chr1:41284193 synonymous SNV . 0 20 hm7G_associated_SNPs_24034 0 0 1 0 1 KCNQ4 chr1:41284177 3'AG 41284177 Downstream 17bp 22138 chr9 101818567 101818567 1 + G T LUAD 101818568 + 101818548 101818588 41 AAAGGGGAGACAGTCGTTGGGCCCCAAGGACCCCCAGGTGC AAAGGGGAGACAGTCGTTGTGCCCCAAGGACCCCCAGGTGC < 41bp 0.386840782151081 0.728343219810987 NA NA prediction 0.456686439621975 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101818568 chr9:101818567 nonsynonymous SNV 0.792 5 20 hm7G_associated_SNPs_24035 0 0 0 0 1 COL15A1 chr9:101818542 3'AG 101818542 Downstream 26bp 22139 chr11 82909527 82909527 1 + G T CESC 82909528 + 82909508 82909548 41 GATTTTTCAATAGGTTCCAGGAAGAAGGTGCATTTTGGCAG GATTTTTCAATAGGTTCCATGAAGAAGGTGCATTTTGGCAG < 41bp 0.64662726311953 0.874969221844464 NA NA prediction 0.456683917449868 Functional Gain - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82909528 chr11:82909527 nonsynonymous SNV 0.926 2 20 hm7G_associated_SNPs_24036 0 0 0 0 2 ANKRD42 chr11:82909521 3'AG 82909521 Downstream 7bp 22140 chr11 82909527 82909527 1 + G T CESC 82909528 + 82909508 82909548 41 GATTTTTCAATAGGTTCCAGGAAGAAGGTGCATTTTGGCAG GATTTTTCAATAGGTTCCATGAAGAAGGTGCATTTTGGCAG < 41bp 0.64662726311953 0.874969221844464 NA NA prediction 0.456683917449868 Functional Gain - ANKRD42 ENSG00000137494 CDS Human protein_coding chr11:82909528 chr11:82909527 nonsynonymous SNV 0.926 2 20 hm7G_associated_SNPs_24036 0 0 0 0 2 ANKRD42 chr11:82909600 5'GT 82909600 Upstream 74bp 22141 chr5 53815321 53815321 1 + G T UCEC 53815322 + 53815302 53815342 41 TCGCGGAGCAGCCCAGGCAGGACCTGGATCCCGTCATGGAC TCGCGGAGCAGCCCAGGCATGACCTGGATCCCGTCATGGAC < 41bp 0.395784115582751 0.728327610823952 NA NA prediction 0.456655221647905 Functional Gain - SNX18 ENSG00000178996 CDS Human protein_coding chr5:53815322 chr5:53815321 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24037 0 0 1 0 1 SNX18 chr5:53815403 5'GT 53815403 Upstream 83bp 22142 chr4 38945103 38945103 1 + G T UCEC 38945104 + 38945084 38945124 41 ACAGTACAACGTACATACAGGATGCCTTCCAGCTGCTGCTG ACAGTACAACGTACATACATGATGCCTTCCAGCTGCTGCTG < 41bp 0.652659600383492 0.880983997863233 NA NA prediction 0.456648794959482 Functional Gain - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38945104 chr4:38945103 nonsynonymous SNV 0.693 2 20 hm7G_associated_SNPs_24038 0 0 0 0 1 FAM114A1 chr4:38945077 3'AG 38945077 Downstream 27bp 22143 chr1 182775294 182775294 1 + G T COAD 182775295 + 182775275 182775315 41 AACAGTGAATGGCACAACAGGAGAAGGCCTGTCCCTGAGCG AACAGTGAATGGCACAACATGAGAAGGCCTGTCCCTGAGCG < 41bp 0.600870753642057 0.829189023737538 NA NA prediction 0.456636540190961 Functional Gain - NPL ENSG00000135838 CDS Human protein_coding chr1:182775295 chr1:182775294 stopgain 0.812 1 20 hm7G_associated_SNPs_24039 0 0 0 0 2 NPL chr1:182775280 3'AG 182775280 Downstream 15bp 22144 chr1 182775294 182775294 1 + G T COAD 182775295 + 182775275 182775315 41 AACAGTGAATGGCACAACAGGAGAAGGCCTGTCCCTGAGCG AACAGTGAATGGCACAACATGAGAAGGCCTGTCCCTGAGCG < 41bp 0.600870753642057 0.829189023737538 NA NA prediction 0.456636540190961 Functional Gain - NPL ENSG00000135838 CDS Human protein_coding chr1:182775295 chr1:182775294 stopgain 0.812 1 20 hm7G_associated_SNPs_24039 0 0 0 0 2 NPL chr1:182775367 5'GT 182775367 Upstream 74bp 22145 chr2 217340172 217340172 1 + G T THCA 217340173 + 217340153 217340193 41 TGAGCTGTTTTGGAACCCAGGGGTAAGAGACGCAGAAGACT TGAGCTGTTTTGGAACCCATGGGTAAGAGACGCAGAAGACT < 41bp 0.666044564491746 0.894343589676842 NA NA prediction 0.456598050370192 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217340173 chr2:217340172 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_24041 0 0 0 0 1 SMARCAL1 chr2:217340174 5'GT 217340174 Upstream 3bp 22146 chr16 28506497 28506497 1 + G T UCEC 28506498 + 28506478 28506518 41 GGGAGGCGCAGGCGGCTGAGGAACTGGGGGTGGTGGCGGTG GGGAGGCGCAGGCGGCTGATGAACTGGGGGTGGTGGCGGTG < 41bp 0.671672367635146 0.899939089623642 NA NA prediction 0.456533443976991 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28506498 chr16:28506497 nonsynonymous SNV 0.019 2 20 hm7G_associated_SNPs_24043 0 0 0 0 1 APOBR chr16:28506420 3'AG 28506420 Downstream 78bp 22147 chr1 236894559 236894559 1 + G T LUSC 236894560 + 236894540 236894580 41 CCATAGGAAATATTAACCTGGCCATGGAAATCGCTGAGAAG CCATAGGAAATATTAACCTTGCCATGGAAATCGCTGAGAAG < 41bp 0.585542337892529 0.813800202090209 NA NA prediction 0.456515728395361 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236894560 chr1:236894559 synonymous SNV . 0 20 hm7G_associated_SNPs_24045 0 0 1 0 1 ACTN2 chr1:236894614 5'GT 236894614 Upstream 56bp 22148 chr11 134240971 134240971 1 + G T ESCA 134240972 + 134240952 134240992 41 GGGAAATGGACAGTCCTTCGGGTACATTCTCTATGAGACCA GGGAAATGGACAGTCCTTCTGGTACATTCTCTATGAGACCA < 41bp 0.37488149515791 0.728246883215139 NA NA prediction 0.456493766430277 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134240972 chr11:134240971 nonsynonymous SNV 0.476 5 20 hm7G_associated_SNPs_24046 0 0 1 0 2 GLB1L2 chr11:134240902 3'AG 134240902 Downstream 70bp 22149 chr11 134240971 134240971 1 + G T ESCA 134240972 + 134240952 134240992 41 GGGAAATGGACAGTCCTTCGGGTACATTCTCTATGAGACCA GGGAAATGGACAGTCCTTCTGGTACATTCTCTATGAGACCA < 41bp 0.37488149515791 0.728246883215139 NA NA prediction 0.456493766430277 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134240972 chr11:134240971 nonsynonymous SNV 0.476 5 20 hm7G_associated_SNPs_24046 0 0 1 0 2 GLB1L2 chr11:134241042 5'GT 134241042 Upstream 72bp 22150 chr4 108954379 108954379 1 + G T HNSC 108954380 + 108954360 108954400 41 TGCTATGAAATTAGGAGCCGGTTACCCCATGGGCCCATTTG TGCTATGAAATTAGGAGCCTGTTACCCCATGGGCCCATTTG < 41bp 0.657676921790142 0.885923349705291 NA NA prediction 0.456492855830298 Functional Gain - HADH ENSG00000138796 CDS Human protein_coding chr4:108954380 chr4:108954379 nonsynonymous SNV 0.971 5 20 hm7G_associated_SNPs_24047 0 0 1 0 2 HADH chr4:108954332 3'AG 108954332 Downstream 48bp 22151 chr4 108954379 108954379 1 + G T HNSC 108954380 + 108954360 108954400 41 TGCTATGAAATTAGGAGCCGGTTACCCCATGGGCCCATTTG TGCTATGAAATTAGGAGCCTGTTACCCCATGGGCCCATTTG < 41bp 0.657676921790142 0.885923349705291 NA NA prediction 0.456492855830298 Functional Gain - HADH ENSG00000138796 CDS Human protein_coding chr4:108954380 chr4:108954379 nonsynonymous SNV 0.971 5 20 hm7G_associated_SNPs_24047 0 0 1 0 2 HADH chr4:108954448 5'GT 108954448 Upstream 70bp 22152 chr20 36488745 36488745 1 + G T UCEC 36488746 + 36488726 36488766 41 TTGTCAGGCATATCATCAAGGGTGAGTTGGATGCTACTCAT TTGTCAGGCATATCATCAATGGTGAGTTGGATGCTACTCAT < 41bp 0.400274346297321 0.728245031402532 NA NA prediction 0.456490062805065 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488746 chr20:36488745 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_24048 0 0 1 0 1 CTNNBL1 chr20:36488674 3'AG 36488674 Downstream 72bp 22153 chr7 79828629 79828629 1 + G T LUAD 79828630 + 79828610 79828650 41 GGAGTTATAAAGAGATTGTGGAAAGATAGTGGTGTACAAGC GGAGTTATAAAGAGATTGTTGAAAGATAGTGGTGTACAAGC < 41bp 0.65980990435969 0.888029925739897 NA NA prediction 0.456440042760414 Functional Gain - GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79828630 chr7:79828629 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24049 0 0 1 0 2 GNAI1 chr7:79828541 3'AG 79828541 Downstream 89bp 22154 chr7 79828629 79828629 1 + G T LUAD 79828630 + 79828610 79828650 41 GGAGTTATAAAGAGATTGTGGAAAGATAGTGGTGTACAAGC GGAGTTATAAAGAGATTGTTGAAAGATAGTGGTGTACAAGC < 41bp 0.65980990435969 0.888029925739897 NA NA prediction 0.456440042760414 Functional Gain - GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79828630 chr7:79828629 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24049 0 0 1 0 2 GNAI1 chr7:79828698 5'GT 79828698 Upstream 70bp 22155 chr20 61162289 61162289 1 + G A rs149629841 61162290 + 61162270 61162310 41 CGCGGGGAGAGCCCGGCTCGGCACGTGGTCAGCTCCAAGTA CGCGGGGAGAGCCCGGCTCAGCACGTGGTCAGCTCCAAGTA < 41bp 0.509535616726842 0.737748174727461 NA NA prediction 0.456425116001239 Functional Gain - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61162290 chr20:61162289 synonymous SNV . 0 20 hm7G_associated_SNPs_24050 0 0 0 0 2 MIR1-1HG chr20:61162196 3'AG 61162196 Downstream 94bp 22156 chr20 61162289 61162289 1 + G A rs149629841 61162290 + 61162270 61162310 41 CGCGGGGAGAGCCCGGCTCGGCACGTGGTCAGCTCCAAGTA CGCGGGGAGAGCCCGGCTCAGCACGTGGTCAGCTCCAAGTA < 41bp 0.509535616726842 0.737748174727461 NA NA prediction 0.456425116001239 Functional Gain - MIR1-1HG ENSG00000174407 CDS Human antisense chr20:61162290 chr20:61162289 synonymous SNV . 0 20 hm7G_associated_SNPs_24050 0 0 0 0 2 MIR1-1HG chr20:61162307 5'GT 61162307 Upstream 19bp 22157 chr11 66189604 66189604 1 + G A KIRC 66189605 + 66189585 66189625 41 CTACAGGCACTCCTCTGGCGGGCCCCACGGGGCTTCTCTCA CTACAGGCACTCCTCTGGCAGGCCCCACGGGGCTTCTCTCA < 41bp 0.50641436181146 0.73458992065744 NA NA prediction 0.45635111769196 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189605 chr11:66189604 synonymous SNV . 0 20 hm7G_associated_SNPs_24052 0 0 0 0 1 NPAS4 chr11:66189591 3'AG 66189591 Downstream 14bp 22158 chr20 43550362 43550362 1 + G T UCEC 43550363 + 43550343 43550383 41 ATGAAGCAGGACCGGCTGAGGCGTTACCAGGTGAGGTCAGG ATGAAGCAGGACCGGCTGATGCGTTACCAGGTGAGGTCAGG < 41bp 0.39183729573667 0.728162866362905 NA NA prediction 0.45632573272581 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43550363 chr20:43550362 nonsynonymous SNV 0.946 1 20 hm7G_associated_SNPs_24053 0 0 1 0 1 PABPC1L chr20:43550372 5'GT 43550372 Upstream 11bp 22159 chr19 6750343 6750343 1 + G T BLCA 6750344 + 6750324 6750364 41 AGTCGAGTCCTTAGCAACCGGGGAGACAGCCTGAGCCGGCA AGTCGAGTCCTTAGCAACCTGGGAGACAGCCTGAGCCGGCA < 41bp 0.673699488262181 0.901850838076117 NA NA prediction 0.456302699627872 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750344 chr19:6750343 nonsynonymous SNV 0.699 3 20 hm7G_associated_SNPs_24054 0 0 1 0 2 TRIP10 chr19:6750303 3'AG 6750303 Downstream 41bp 22160 chr19 6750343 6750343 1 + G T BLCA 6750344 + 6750324 6750364 41 AGTCGAGTCCTTAGCAACCGGGGAGACAGCCTGAGCCGGCA AGTCGAGTCCTTAGCAACCTGGGAGACAGCCTGAGCCGGCA < 41bp 0.673699488262181 0.901850838076117 NA NA prediction 0.456302699627872 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6750344 chr19:6750343 nonsynonymous SNV 0.699 3 20 hm7G_associated_SNPs_24054 0 0 1 0 2 TRIP10 chr19:6750442 5'GT 6750442 Upstream 100bp 22161 chr14 102906840 102906840 1 + G T LUSC 102906841 + 102906821 102906861 41 GTGGGAAAGTCACCATCAAGGGGAAGCGGCACTGGTACGAA GTGGGAAAGTCACCATCAATGGGAAGCGGCACTGGTACGAA < 41bp 0.377686841986369 0.728140828510482 NA NA prediction 0.456281657020965 Functional Gain - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102906841 chr14:102906840 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24055 0 0 0 0 1 TECPR2 chr14:102906773 3'AG 102906773 Downstream 68bp 22162 chr15 75552733 75552733 1 + G T UCEC 75552734 + 75552714 75552754 41 CTAAAAGAATATCAGCAAAGGAAGAGCCCTGGTATTCCAGC CTAAAAGAATATCAGCAAATGAAGAGCCCTGGTATTCCAGC < 41bp 0.404290207308257 0.728135526175029 NA NA prediction 0.456271052350057 Functional Gain - GOLGA6C ENSG00000167195 CDS Human protein_coding chr15:75552734 chr15:75552733 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_24056 0 0 0 0 1 GOLGA6C chr15:75552714 3'AG 75552714 Downstream 20bp 22163 chr19 1295574 1295574 1 + G T LUAD 1295575 + 1295555 1295595 41 GCGCGGGGGACGACGGCGGGGGCTACACGGTGGAGGTGAGC GCGCGGGGGACGACGGCGGTGGCTACACGGTGGAGGTGAGC < 41bp 0.680240147746312 0.90837410315223 NA NA prediction 0.456267910811834 Functional Gain - EFNA2 ENSG00000099617 CDS Human protein_coding chr19:1295575 chr19:1295574 synonymous SNV . 0 20 hm7G_associated_SNPs_24057 0 0 1 0 1 EFNA2 chr19:1295544 3'AG 1295544 Downstream 31bp 22164 chr1 244756818 244756818 1 + G T SARC 244756819 + 244756799 244756839 41 AGAGAGTAAGGTATATTTGGGGAGAATATGGCTGCCCTCTG AGAGAGTAAGGTATATTTGTGGAGAATATGGCTGCCCTCTG < 41bp 0.414786970895537 0.728111248125757 NA NA prediction 0.456222496251513 Functional Gain - CATSPERE ENSG00000179397 CDS Human protein_coding chr1:244756819 chr1:244756818 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_24062 0 0 0 0 2 CATSPERE chr1:244756801 3'AG 244756801 Downstream 18bp 22165 chr1 244756818 244756818 1 + G T SARC 244756819 + 244756799 244756839 41 AGAGAGTAAGGTATATTTGGGGAGAATATGGCTGCCCTCTG AGAGAGTAAGGTATATTTGTGGAGAATATGGCTGCCCTCTG < 41bp 0.414786970895537 0.728111248125757 NA NA prediction 0.456222496251513 Functional Gain - CATSPERE ENSG00000179397 CDS Human protein_coding chr1:244756819 chr1:244756818 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_24062 0 0 0 0 2 CATSPERE chr1:244756880 5'GT 244756880 Upstream 63bp 22166 chr9 131475465 131475465 1 + G T LUAD 131475466 + 131475446 131475486 41 CAAGCACCAGCGTGGCCGAGGCGAGCTTGCCAGTGAGTAGG CAAGCACCAGCGTGGCCGATGCGAGCTTGCCAGTGAGTAGG < 41bp 0.374435067485608 0.728104877375611 NA NA prediction 0.456209754751222 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131475466 chr9:131475465 nonsynonymous SNV 0.630 2 20 hm7G_associated_SNPs_24063 0 0 1 0 2 PKN3 chr9:131475477 5'GT 131475477 Upstream 13bp 22167 chr9 131475465 131475465 1 + G T LUAD 131475466 + 131475446 131475486 41 CAAGCACCAGCGTGGCCGAGGCGAGCTTGCCAGTGAGTAGG CAAGCACCAGCGTGGCCGATGCGAGCTTGCCAGTGAGTAGG < 41bp 0.374435067485608 0.728104877375611 NA NA prediction 0.456209754751222 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131475466 chr9:131475465 nonsynonymous SNV 0.630 2 20 hm7G_associated_SNPs_24063 0 0 1 0 2 PKN3 chr9:131475481 5'GT 131475481 Upstream 17bp 22168 chr6 76423422 76423422 1 + G T UCEC 76423423 + 76423403 76423443 41 GGAATGGGAAGTTAAAAAAGGAAGCAAAAGAAGTTTTTCCA GGAATGGGAAGTTAAAAAATGAAGCAAAAGAAGTTTTTCCA < 41bp 0.640910694603751 0.869009295364592 NA NA prediction 0.45619720152168 Functional Gain - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76423423 chr6:76423422 stopgain 0.990 1 20 hm7G_associated_SNPs_24064 0 0 1 0 1 SENP6 chr6:76423391 3'AG 76423391 Downstream 32bp 22169 chr3 179093112 179093112 1 + G T LIHC 179093113 + 179093093 179093133 41 TAATGGATTCAGTAAACCTGGCAGCTGAAGATAAAAGGTAT TAATGGATTCAGTAAACCTTGCAGCTGAAGATAAAAGGTAT < 41bp 0.650065503334381 0.878160567649656 NA NA prediction 0.456190128630551 Functional Gain - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179093113 chr3:179093112 synonymous SNV . 0 20 hm7G_associated_SNPs_24065 0 0 1 1 1 MFN1 chr3:179093129 5'GT 179093129 Upstream 18bp 22170 chr8 95677269 95677269 1 + G T UCEC 95677270 + 95677250 95677290 41 AGAGGCACAAACATCACATGGGGACCCGGTATATTGAGGTA AGAGGCACAAACATCACATTGGGACCCGGTATATTGAGGTA < 41bp 0.388817512120661 0.72808456411651 NA NA prediction 0.45616912823302 Functional Gain - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95677270 chr8:95677269 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24067 0 0 1 0 1 ESRP1 chr8:95677287 5'GT 95677287 Upstream 19bp 22171 chr5 56152487 56152487 1 + G T OV 56152488 + 56152468 56152508 41 AGATGGATGATCGTCCAGAGGAACGAATGATCAGGGAGAAA AGATGGATGATCGTCCAGATGAACGAATGATCAGGGAGAAA < 41bp 0.66419761749899 0.892281200421712 NA NA prediction 0.456167165845443 Functional Gain - MAP3K1 ENSG00000095015 CDS Human protein_coding chr5:56152488 chr5:56152487 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_24068 0 0 1 0 2 MAP3K1 chr5:56152427 3'AG 56152427 Downstream 61bp 22172 chr5 56152487 56152487 1 + G T OV 56152488 + 56152468 56152508 41 AGATGGATGATCGTCCAGAGGAACGAATGATCAGGGAGAAA AGATGGATGATCGTCCAGATGAACGAATGATCAGGGAGAAA < 41bp 0.66419761749899 0.892281200421712 NA NA prediction 0.456167165845443 Functional Gain - MAP3K1 ENSG00000095015 CDS Human protein_coding chr5:56152488 chr5:56152487 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_24068 0 0 1 0 2 MAP3K1 chr5:56152577 5'GT 56152577 Upstream 91bp 22173 chr1 222903020 222903020 1 + G T UCEC 222903021 + 222903001 222903041 41 AAATGCGGTGAAGCAATCAGGTCTCTCCAAGAAGCAGAAAA AAATGCGGTGAAGCAATCATGTCTCTCCAAGAAGCAGAAAA < 41bp 0.397883525210971 0.728083086766243 NA NA prediction 0.456166173532486 Functional Gain - BROX ENSG00000162819 CDS Human protein_coding chr1:222903021 chr1:222903020 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24069 0 0 1 0 2 BROX chr1:222902962 3'AG 222902962 Downstream 59bp 22174 chr1 222903020 222903020 1 + G T UCEC 222903021 + 222903001 222903041 41 AAATGCGGTGAAGCAATCAGGTCTCTCCAAGAAGCAGAAAA AAATGCGGTGAAGCAATCATGTCTCTCCAAGAAGCAGAAAA < 41bp 0.397883525210971 0.728083086766243 NA NA prediction 0.456166173532486 Functional Gain - BROX ENSG00000162819 CDS Human protein_coding chr1:222903021 chr1:222903020 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24069 0 0 1 0 2 BROX chr1:222903043 5'GT 222903043 Upstream 24bp 22175 chr8 10102618 10102618 1 + G T LUAD 10102619 + 10102599 10102639 41 TTTTTCTTTTTTAAGGAATGGGATGTTTCTGGGGAGCTGAA TTTTTCTTTTTTAAGGAATTGGATGTTTCTGGGGAGCTGAA < 41bp 0.413953713496928 0.728061815368438 NA NA prediction 0.456123630736875 Functional Gain - MSRA ENSG00000175806 CDS Human protein_coding chr8:10102619 chr8:10102618 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24071 0 0 0 0 1 MSRA chr8:10102614 3'AG 10102614 Downstream 5bp 22176 chr4 177081166 177081166 1 + G T LUSC 177081167 + 177081147 177081187 41 GAGCTGACCAATTAATCCAGGAAGATAAGGATGATGTCATT GAGCTGACCAATTAATCCATGAAGATAAGGATGATGTCATT < 41bp 0.415308122716136 0.728049780123551 NA NA prediction 0.456099560247103 Functional Gain - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177081167 chr4:177081166 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_24073 0 0 0 0 1 WDR17 chr4:177081145 3'AG 177081145 Downstream 22bp 22177 chr16 57151419 57151419 1 + G T LUAD 57151420 + 57151400 57151440 41 CCTTACAGATCGCTGCCCAGGAGCTGTCCGACAACCGCGTC CCTTACAGATCGCTGCCCATGAGCTGTCCGACAACCGCGTC < 41bp 0.36803391859165 0.728042348729389 NA NA prediction 0.456084697458778 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57151420 chr16:57151419 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_24074 0 0 0 0 2 CPNE2 chr16:57151408 3'AG 57151408 Downstream 12bp 22178 chr16 57151419 57151419 1 + G T LUAD 57151420 + 57151400 57151440 41 CCTTACAGATCGCTGCCCAGGAGCTGTCCGACAACCGCGTC CCTTACAGATCGCTGCCCATGAGCTGTCCGACAACCGCGTC < 41bp 0.36803391859165 0.728042348729389 NA NA prediction 0.456084697458778 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57151420 chr16:57151419 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_24074 0 0 0 0 2 CPNE2 chr16:57151479 5'GT 57151479 Upstream 61bp 22179 chr12 85441149 85441149 1 + G T LUSC 85441150 + 85441130 85441170 41 AAACTCTCAAAGCTCAGAGGGATAGAGAAGAAAAACAATTT AAACTCTCAAAGCTCAGAGTGATAGAGAAGAAAAACAATTT < 41bp 0.417136372587639 0.728023933653305 NA NA prediction 0.45604786730661 Functional Gain - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85441150 chr12:85441149 nonsynonymous SNV 0.950 0 20 hm7G_associated_SNPs_24076 0 0 0 0 1 LRRIQ1 chr12:85441248 5'GT 85441248 Upstream 100bp 22180 chr1 214503600 214503600 1 + G T GBM 214503601 + 214503581 214503621 41 TCTTTACCTGTGAGTGCCAGGAGTGTACCACCAAGGACAAG TCTTTACCTGTGAGTGCCATGAGTGTACCACCAAGGACAAG < 41bp 0.655776163981835 0.883795549033185 NA NA prediction 0.456038770102699 Functional Gain - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503601 chr1:214503600 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_24078 0 0 1 1 2 SMYD2 chr1:214503511 3'AG 214503511 Downstream 90bp 22181 chr1 214503600 214503600 1 + G T GBM 214503601 + 214503581 214503621 41 TCTTTACCTGTGAGTGCCAGGAGTGTACCACCAAGGACAAG TCTTTACCTGTGAGTGCCATGAGTGTACCACCAAGGACAAG < 41bp 0.655776163981835 0.883795549033185 NA NA prediction 0.456038770102699 Functional Gain - SMYD2 ENSG00000143499 CDS Human protein_coding chr1:214503601 chr1:214503600 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_24078 0 0 1 1 2 SMYD2 chr1:214503621 5'GT 214503621 Upstream 22bp 22182 chr1 231411230 231411230 1 + G T UCEC 231411231 + 231411211 231411251 41 GTGTGAGGCTCGGAGTAGTGGAGAAGAAGAAGATGTAAGTA GTGTGAGGCTCGGAGTAGTTGAGAAGAAGAAGATGTAAGTA < 41bp 0.654201955553704 0.882204009676801 NA NA prediction 0.456004108246195 Functional Gain - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231411231 chr1:231411230 synonymous SNV . 0 20 hm7G_associated_SNPs_24079 0 0 1 0 2 GNPAT chr1:231411151 3'AG 231411151 Downstream 80bp 22183 chr1 231411230 231411230 1 + G T UCEC 231411231 + 231411211 231411251 41 GTGTGAGGCTCGGAGTAGTGGAGAAGAAGAAGATGTAAGTA GTGTGAGGCTCGGAGTAGTTGAGAAGAAGAAGATGTAAGTA < 41bp 0.654201955553704 0.882204009676801 NA NA prediction 0.456004108246195 Functional Gain - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231411231 chr1:231411230 synonymous SNV . 0 20 hm7G_associated_SNPs_24079 0 0 1 0 2 GNPAT chr1:231411244 5'GT 231411244 Upstream 15bp 22184 chr12 527688 527688 1 + G T UCEC 527689 + 527669 527709 41 GAATGTGATTTGCAGCAGAGGGAGGAAGAGATTGCTGAATT GAATGTGATTTGCAGCAGATGGAGGAAGAGATTGCTGAATT < 41bp 0.659744864266873 0.887743941431092 NA NA prediction 0.455998154328439 Functional Gain - CCDC77 ENSG00000120647 CDS Human protein_coding chr12:527689 chr12:527688 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_24080 0 0 1 0 1 CCDC77 chr12:527660 3'AG 527660 Downstream 29bp 22185 chr12 49691175 49691175 1 + G T LGG 49691176 + 49691156 49691196 41 GGCAGTTGAGAGAGCTGGAGGAGCAGTTCGCCCTGGAGGCG GGCAGTTGAGAGAGCTGGATGAGCAGTTCGCCCTGGAGGCG < 41bp 0.664326142362757 0.892316890851419 NA NA prediction 0.455981496977324 Functional Gain - PRPH ENSG00000135406 CDS Human protein_coding chr12:49691176 chr12:49691175 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24081 0 0 0 0 1 PRPH chr12:49691140 3'AG 49691140 Downstream 36bp 22186 chr12 108962638 108962638 1 + G T LUSC 108962639 + 108962619 108962659 41 ATGCAATCAAGGCCGCCCTGGCTGATTACAAATTGAAACAA ATGCAATCAAGGCCGCCCTTGCTGATTACAAATTGAAACAA < 41bp 0.425230248066128 0.727975362901663 NA NA prediction 0.455950725803326 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108962639 chr12:108962638 synonymous SNV . 0 20 hm7G_associated_SNPs_24082 0 0 1 0 1 ISCU chr12:108962607 3'AG 108962607 Downstream 32bp 22187 chr5 139062450 139062450 1 + G T UCEC 139062451 + 139062431 139062471 41 TCTCCCGCCCCCGCCAGAAGGTGATGCTTCCGACGGGAGCC TCTCCCGCCCCCGCCAGAATGTGATGCTTCCGACGGGAGCC < 41bp 0.652802057411927 0.880756951908698 NA NA prediction 0.455909788993543 Functional Gain - CXXC5 ENSG00000171604 CDS Human protein_coding chr5:139062451 chr5:139062450 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24084 0 0 1 0 1 CXXC5 chr5:139062448 3'AG 139062448 Downstream 3bp 22188 chr5 149581949 149581949 1 + G T UCEC 149581950 + 149581930 149581970 41 TCAGATCTTCTATTCCCTGGGTGTGGGCTTCGGGGGGCTCC TCAGATCTTCTATTCCCTGTGTGTGGGCTTCGGGGGGCTCC < 41bp 0.665017137126956 0.892966298563571 NA NA prediction 0.45589832287323 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149581950 chr5:149581949 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24086 0 0 0 0 2 SLC6A7 chr5:149581910 3'AG 149581910 Downstream 40bp 22189 chr5 149581949 149581949 1 + G T UCEC 149581950 + 149581930 149581970 41 TCAGATCTTCTATTCCCTGGGTGTGGGCTTCGGGGGGCTCC TCAGATCTTCTATTCCCTGTGTGTGGGCTTCGGGGGGCTCC < 41bp 0.665017137126956 0.892966298563571 NA NA prediction 0.45589832287323 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149581950 chr5:149581949 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24086 0 0 0 0 2 SLC6A7 chr5:149582013 5'GT 149582013 Upstream 65bp 22190 chr4 95199820 95199820 1 + G T LIHC 95199821 + 95199801 95199841 41 TTGAGTTGTGTGCAATGTCGGAGAAGCAGGAGCAACTCTAT TTGAGTTGTGTGCAATGTCTGAGAAGCAGGAGCAACTCTAT < 41bp 0.648266362031814 0.87619574343784 NA NA prediction 0.455858762812051 Functional Gain - SMARCAD1 ENSG00000163104 CDS Human protein_coding chr4:95199821 chr4:95199820 synonymous SNV . 0 20 hm7G_associated_SNPs_24087 0 0 1 0 2 SMARCAD1 chr4:95199767 3'AG 95199767 Downstream 54bp 22191 chr4 95199820 95199820 1 + G T LIHC 95199821 + 95199801 95199841 41 TTGAGTTGTGTGCAATGTCGGAGAAGCAGGAGCAACTCTAT TTGAGTTGTGTGCAATGTCTGAGAAGCAGGAGCAACTCTAT < 41bp 0.648266362031814 0.87619574343784 NA NA prediction 0.455858762812051 Functional Gain - SMARCAD1 ENSG00000163104 CDS Human protein_coding chr4:95199821 chr4:95199820 synonymous SNV . 0 20 hm7G_associated_SNPs_24087 0 0 1 0 2 SMARCAD1 chr4:95199884 5'GT 95199884 Upstream 65bp 22192 chr11 12376403 12376403 1 + G T ESCA 12376404 + 12376384 12376424 41 GAGAGAAAATGCTCAAGGAGGGTGAGTATGCTTGGGCCTTT GAGAGAAAATGCTCAAGGATGGTGAGTATGCTTGGGCCTTT < 41bp 0.653585397999206 0.881513636827878 NA NA prediction 0.455856477657345 Functional Gain - MICALCL ENSG00000133808 CDS Human protein_coding chr11:12376404 chr11:12376403 nonsynonymous SNV 0.944 0 20 hm7G_associated_SNPs_24088 0 0 0 0 1 MICALCL chr11:12376331 3'AG 12376331 Downstream 73bp 22193 chr6 44150893 44150893 1 + G T UCEC 44150894 + 44150874 44150914 41 AGGTAATGCAGGTCCTGGTGGCCAGGTATGCAGATGATGAC AGGTAATGCAGGTCCTGGTTGCCAGGTATGCAGATGATGAC < 41bp 0.66799390235269 0.895894240559696 NA NA prediction 0.455800676414013 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44150894 chr6:44150893 synonymous SNV . 0 20 hm7G_associated_SNPs_24091 0 0 0 0 2 CAPN11 chr6:44150856 3'AG 44150856 Downstream 38bp 22194 chr6 44150893 44150893 1 + G T UCEC 44150894 + 44150874 44150914 41 AGGTAATGCAGGTCCTGGTGGCCAGGTATGCAGATGATGAC AGGTAATGCAGGTCCTGGTTGCCAGGTATGCAGATGATGAC < 41bp 0.66799390235269 0.895894240559696 NA NA prediction 0.455800676414013 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44150894 chr6:44150893 synonymous SNV . 0 20 hm7G_associated_SNPs_24091 0 0 0 0 2 CAPN11 chr6:44150972 5'GT 44150972 Upstream 80bp 22195 chr20 57282209 57282209 1 + G A UCEC 57282210 + 57282190 57282230 41 GGGGATGAAGCGAGACTGCGGGGGTGCTGCGGCCGTCCTGG GGGGATGAAGCGAGACTGCAGGGGTGCTGCGGCCGTCCTGG < 41bp 0.497409316776121 0.727899269471506 NA NA prediction 0.455798538943012 Functional Gain - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57282210 chr20:57282209 nonsynonymous SNV 0.114 4 20 hm7G_associated_SNPs_24092 0 0 1 0 2 NPEPL1 chr20:57282179 3'AG 57282179 Downstream 31bp 22196 chr20 57282209 57282209 1 + G A UCEC 57282210 + 57282190 57282230 41 GGGGATGAAGCGAGACTGCGGGGGTGCTGCGGCCGTCCTGG GGGGATGAAGCGAGACTGCAGGGGTGCTGCGGCCGTCCTGG < 41bp 0.497409316776121 0.727899269471506 NA NA prediction 0.455798538943012 Functional Gain - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57282210 chr20:57282209 nonsynonymous SNV 0.114 4 20 hm7G_associated_SNPs_24092 0 0 1 0 2 NPEPL1 chr20:57282256 5'GT 57282256 Upstream 48bp 22197 chr4 178257420 178257420 1 + G T LUAD 178257421 + 178257401 178257441 41 AACGTATTGCCTGGAGTAGGGAACATCATCAAAAATGAAGC AACGTATTGCCTGGAGTAGTGAACATCATCAAAAATGAAGC < 41bp 0.652898051836965 0.880788506504502 NA NA prediction 0.455780909335075 Functional Gain - NEIL3 ENSG00000109674 CDS Human protein_coding chr4:178257421 chr4:178257420 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_24093 0 0 1 0 1 NEIL3 chr4:178257475 5'GT 178257475 Upstream 56bp 22198 chr12 111744752 111744752 1 + G T HNSC 111744753 + 111744733 111744773 41 GAACTTCACTCTGTGCTCGGGCCCTCGGCTGGAGGCCGCGC GAACTTCACTCTGTGCTCGTGCCCTCGGCTGGAGGCCGCGC < 41bp 0.37638947556564 0.727873175656502 NA NA prediction 0.455746351313004 Functional Gain - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111744753 chr12:111744752 nonsynonymous SNV 0.042 3 20 hm7G_associated_SNPs_24095 0 0 0 0 1 CUX2 chr12:111744725 3'AG 111744725 Downstream 28bp 22199 chr15 91489864 91489864 1 + G T LUSC 91489865 + 91489845 91489885 41 AGCTGGTTTGAGGGCCAAGGGCTGGCCGGGAAGCTACGGGC AGCTGGTTTGAGGGCCAAGTGCTGGCCGGGAAGCTACGGGC < 41bp 0.672068647943026 0.899922590518967 NA NA prediction 0.455707885151882 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91489865 chr15:91489864 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_24099 0 0 1 0 1 UNC45A chr15:91489844 3'AG 91489844 Downstream 21bp 22200 chr19 41522557 41522557 1 + G T UCEC 41522558 + 41522538 41522578 41 TCTGTGTCCACAGGGAAGCGGATTTGTCTTGGTGAAGGCAT TCTGTGTCCACAGGGAAGCTGATTTGTCTTGGTGAAGGCAT < 41bp 0.650448323491129 0.878295219331709 NA NA prediction 0.45569379168116 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41522558 chr19:41522557 nonsynonymous SNV 0.945 4 20 hm7G_associated_SNPs_24100 0 0 0 0 1 CYP2B6 chr19:41522551 3'AG 41522551 Downstream 7bp 22201 chr2 27305811 27305811 1 + G A COAD 27305812 + 27305792 27305832 41 GCTGCTGGCCAATGTGAGCGGGGAGCTGGGGGGGCGGTTGG GCTGCTGGCCAATGTGAGCAGGGAGCTGGGGGGGCGGTTGG < 41bp 0.512296107856921 0.740137877876132 NA NA prediction 0.455683540038421 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27305812 chr2:27305811 nonsynonymous SNV 0.705 0 20 hm7G_associated_SNPs_24101 0 0 1 0 1 EMILIN1 chr2:27305849 5'GT 27305849 Upstream 39bp 22202 chr1 116609198 116609198 1 + G T SARC 116609199 + 116609179 116609219 41 AGCCACGGGTCTGACCTCCGGCCTCCTGAGTTTGTTATTGC AGCCACGGGTCTGACCTCCTGCCTCCTGAGTTTGTTATTGC < 41bp 0.392386791977706 0.727838039804087 NA NA prediction 0.455676079608174 Functional Gain - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116609199 chr1:116609198 nonsynonymous SNV 0.057 4 20 hm7G_associated_SNPs_24102 0 0 0 0 1 SLC22A15 chr1:116609141 3'AG 116609141 Downstream 58bp 22203 chr16 67702121 67702121 1 + G A PAAD 67702122 + 67702102 67702142 41 GGAAAGGCCCAGCGCCTGCGGCCGCTGTACCAGTACGTCAA GGAAAGGCCCAGCGCCTGCAGCCGCTGTACCAGTACGTCAA < 41bp 0.508439872583864 0.736273319223612 NA NA prediction 0.455666893279498 Functional Gain - C16orf86 ENSG00000159761 CDS Human protein_coding chr16:67702122 chr16:67702121 nonsynonymous SNV 0.922 3 20 hm7G_associated_SNPs_24103 0 0 0 0 1 C16orf86 chr16:67702103 3'AG 67702103 Downstream 19bp 22204 chr5 115329444 115329444 1 + G T COAD 115329445 + 115329425 115329465 41 TCATTTCCAAAAGTGGTTTGGAAACTTGGTTACCATGAATT TCATTTCCAAAAGTGGTTTTGAAACTTGGTTACCATGAATT < 41bp 0.409142580582159 0.727817103440404 NA NA prediction 0.455634206880807 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115329445 chr5:115329444 stopgain 1.000 1 20 hm7G_associated_SNPs_24105 0 0 0 0 1 LVRN chr5:115329438 3'AG 115329438 Downstream 7bp 22205 chr11 57428335 57428335 1 + G T UCEC 57428336 + 57428316 57428356 41 ACACCTGTGGCTGGGTCAAGGGCTCTGGTTACCAGGCTCTG ACACCTGTGGCTGGGTCAATGGCTCTGGTTACCAGGCTCTG < 41bp 0.659577907185354 0.887388878516957 NA NA prediction 0.455621942663206 Functional Gain - CLP1 ENSG00000172409 CDS Human protein_coding chr11:57428336 chr11:57428335 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24106 0 0 0 0 1 CLP1 chr11:57428237 3'AG 57428237 Downstream 99bp 22206 chr10 17735262 17735262 1 + G T UCEC 17735263 + 17735243 17735283 41 GCCCAGCTCTTGTAGCCAAGGATCCTGGTACTGTGGCTAAC GCCCAGCTCTTGTAGCCAATGATCCTGGTACTGTGGCTAAC < 41bp 0.662132554149599 0.889939778197014 NA NA prediction 0.45561444809483 Functional Gain - STAM ENSG00000136738 CDS Human protein_coding chr10:17735263 chr10:17735262 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_24108 0 0 1 0 2 STAM chr10:17735221 3'AG 17735221 Downstream 42bp 22207 chr10 17735262 17735262 1 + G T UCEC 17735263 + 17735243 17735283 41 GCCCAGCTCTTGTAGCCAAGGATCCTGGTACTGTGGCTAAC GCCCAGCTCTTGTAGCCAATGATCCTGGTACTGTGGCTAAC < 41bp 0.662132554149599 0.889939778197014 NA NA prediction 0.45561444809483 Functional Gain - STAM ENSG00000136738 CDS Human protein_coding chr10:17735263 chr10:17735262 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_24108 0 0 1 0 2 STAM chr10:17735311 5'GT 17735311 Upstream 50bp 22208 chr1 196654312 196654312 1 + G T LUAD 196654313 + 196654293 196654333 41 GTTTTTATCCTGCAACCCGGGGAAATACAGCAAAATGCACA GTTTTTATCCTGCAACCCGTGGAAATACAGCAAAATGCACA < 41bp 0.389663680441123 0.727800636785879 NA NA prediction 0.455601273571758 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196654313 chr1:196654312 synonymous SNV . 0 20 hm7G_associated_SNPs_24109 0 0 1 0 1 CFH chr1:196654367 5'GT 196654367 Upstream 56bp 22209 chr15 48512946 48512946 1 + G T LUSC 48512947 + 48512927 48512967 41 GGTGTTGTGAAGTTTGGATGGGTGAAAGGTGTGCTGGTGAG GGTGTTGTGAAGTTTGGATTGGTGAAAGGTGTGCTGGTGAG < 41bp 0.41986769734474 0.727800003685797 NA NA prediction 0.455600007371595 Functional Gain - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48512947 chr15:48512946 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24110 0 0 0 0 1 SLC12A1 chr15:48512962 5'GT 48512962 Upstream 17bp 22210 chrX 100494032 100494032 1 + G T LUAD 100494033 + 100494013 100494053 41 CTGTGCTGGAGTCAGCTCAGGCCTTCCTGTCCCAGCACCCA CTGTGCTGGAGTCAGCTCATGCCTTCCTGTCCCAGCACCCA < 41bp 0.37225777495761 0.727787950817332 NA NA prediction 0.455575901634663 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100494033 chrX:100494032 nonsynonymous SNV 0.932 3 20 hm7G_associated_SNPs_24111 0 0 0 0 2 DRP2 chrX:100493970 3'AG 100493970 Downstream 63bp 22211 chrX 100494032 100494032 1 + G T LUAD 100494033 + 100494013 100494053 41 CTGTGCTGGAGTCAGCTCAGGCCTTCCTGTCCCAGCACCCA CTGTGCTGGAGTCAGCTCATGCCTTCCTGTCCCAGCACCCA < 41bp 0.37225777495761 0.727787950817332 NA NA prediction 0.455575901634663 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100494033 chrX:100494032 nonsynonymous SNV 0.932 3 20 hm7G_associated_SNPs_24111 0 0 0 0 2 DRP2 chrX:100494090 5'GT 100494090 Upstream 59bp 22212 chr19 7913946 7913946 1 + G T UCEC 7913947 + 7913927 7913967 41 TGCGAGAAGCTGATCCGCAGGGACATCGCCCGCACCTACCC TGCGAGAAGCTGATCCGCATGGACATCGCCCGCACCTACCC < 41bp 0.365637574900388 0.727786474277485 NA NA prediction 0.455572948554969 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7913947 chr19:7913946 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24112 0 0 0 0 1 EVI5L chr19:7914031 5'GT 7914031 Upstream 86bp 22213 chr6 3012887 3012887 1 + G T LUAD 3012888 + 3012868 3012908 41 AGCAGAAAAAGGTTCGGGAGGCTGACCTAGTGATATTTCAG AGCAGAAAAAGGTTCGGGATGCTGACCTAGTGATATTTCAG < 41bp 0.66708041299441 0.894859798257339 NA NA prediction 0.455558770525858 Functional Gain - NQO2 ENSG00000124588 CDS Human protein_coding chr6:3012888 chr6:3012887 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_24113 0 0 1 0 1 NQO2 chr6:3012908 5'GT 3012908 Upstream 22bp 22214 chr11 60285675 60285675 1 + G T LUAD 60285676 + 60285656 60285696 41 AAAACAGGATGTACTTTATGGGGAATTTTTGTGAGTAGAAT AAAACAGGATGTACTTTATTGGGAATTTTTGTGAGTAGAAT < 41bp 0.412086920425208 0.727771418087256 NA NA prediction 0.455542836174512 Functional Gain - MS4A13 ENSG00000204979 CDS Human protein_coding chr11:60285676 chr11:60285675 nonsynonymous SNV 0.861 4 20 hm7G_associated_SNPs_24114 0 0 0 0 1 MS4A13 chr11:60285685 5'GT 60285685 Upstream 11bp 22215 chr11 100819251 100819251 1 + G T CESC 100819252 + 100819232 100819272 41 AACTCTGGCTTGAAGCCATGGATGGGAAGGAACCGGTAAGA AACTCTGGCTTGAAGCCATTGATGGGAAGGAACCGGTAAGA < 41bp 0.401598292229285 0.727763566393752 NA NA prediction 0.455527132787504 Functional Gain - ARHGAP42 ENSG00000165895 CDS Human protein_coding chr11:100819252 chr11:100819251 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24115 0 0 0 0 2 ARHGAP42 chr11:100819188 3'AG 100819188 Downstream 64bp 22216 chr11 100819251 100819251 1 + G T CESC 100819252 + 100819232 100819272 41 AACTCTGGCTTGAAGCCATGGATGGGAAGGAACCGGTAAGA AACTCTGGCTTGAAGCCATTGATGGGAAGGAACCGGTAAGA < 41bp 0.401598292229285 0.727763566393752 NA NA prediction 0.455527132787504 Functional Gain - ARHGAP42 ENSG00000165895 CDS Human protein_coding chr11:100819252 chr11:100819251 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24115 0 0 0 0 2 ARHGAP42 chr11:100819266 5'GT 100819266 Upstream 16bp 22217 chr12 25398285 25398285 1 - C A BLCA 25398284 - 25398264 25398304 41 ACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCCT ACTTGTGGTAGTTGGAGCTTGTGGCGTAGGCAAGAGTGCCT < 41bp 0.651013965511644 0.878771312059374 NA NA prediction 0.45551469309546 Functional Gain - KRAS ENSG00000133703 CDS Human protein_coding chr12:25398284 chr12:25398285 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24116 7 0 1 0 2 KRAS chr12:25398208 5'GT 25398208 Upstream 78bp 22218 chr12 25398285 25398285 1 - C A BLCA 25398284 - 25398264 25398304 41 ACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCCT ACTTGTGGTAGTTGGAGCTTGTGGCGTAGGCAAGAGTGCCT < 41bp 0.651013965511644 0.878771312059374 NA NA prediction 0.45551469309546 Functional Gain - KRAS ENSG00000133703 CDS Human protein_coding chr12:25398284 chr12:25398285 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24116 7 0 1 0 2 KRAS chr12:25398329 3'AG 25398329 Downstream 45bp 22219 chr21 22881210 22881210 1 + G T LUSC 22881211 + 22881191 22881231 41 TGGGCTTGGAGCAGTAATTGGCCTGGGAGTTGCTGCACTGC TGGGCTTGGAGCAGTAATTTGCCTGGGAGTTGCTGCACTGC < 41bp 0.417506170747356 0.72775411801465 NA NA prediction 0.4555082360293 Functional Gain - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22881211 chr21:22881210 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_24118 0 0 0 0 1 NCAM2 chr21:22881172 3'AG 22881172 Downstream 39bp 22220 chr11 285169 285169 1 + G T BRCA 285170 + 285150 285190 41 CTGCGTGTGGCTGCAGTCTGGCCTCTGTGGAGCTGAGCGAG CTGCGTGTGGCTGCAGTCTTGCCTCTGTGGAGCTGAGCGAG < 41bp 0.658637751436552 0.886390215278816 NA NA prediction 0.455504927684528 Functional Gain - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:285170 chr11:285169 synonymous SNV . 0 20 hm7G_associated_SNPs_24119 0 0 0 0 1 NLRP6 chr11:285166 3'AG 285166 Downstream 4bp 22221 chr17 72227033 72227033 1 + G T LIHC 72227034 + 72227014 72227054 41 ATCTTGCTTATAGTGCTGCGGTGGGCGTTGGTTTCTATGGA ATCTTGCTTATAGTGCTGCTGTGGGCGTTGGTTTCTATGGA < 41bp 0.395445800798603 0.727742108907148 NA NA prediction 0.455484217814296 Functional Gain - TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72227034 chr17:72227033 synonymous SNV . 0 20 hm7G_associated_SNPs_24120 0 0 0 0 1 TTYH2 chr17:72227027 3'AG 72227027 Downstream 7bp 22222 chr1 146758041 146758041 1 + G T GBM 146758042 + 146758022 146758062 41 CTGAGGAGAGCGAGCCAGAGGACCTTGAGAATGGGGAAGAG CTGAGGAGAGCGAGCCAGATGACCTTGAGAATGGGGAAGAG < 41bp 0.665484620372128 0.893223474568764 NA NA prediction 0.455477708393272 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146758042 chr1:146758041 nonsynonymous SNV 0.749 1 20 hm7G_associated_SNPs_24121 0 0 1 0 1 CHD1L chr1:146757975 3'AG 146757975 Downstream 67bp 22223 chrX 38229079 38229079 1 + G T UCEC 38229080 + 38229060 38229100 41 ATTGCAAGGGAAGTCCTTAGGCATGATTTTTGAGAAAAGAA ATTGCAAGGGAAGTCCTTATGCATGATTTTTGAGAAAAGAA < 41bp 0.655645217111646 0.883376310030564 NA NA prediction 0.455462185837835 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38229080 chrX:38229079 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_24122 0 0 0 0 2 OTC chrX:38229049 3'AG 38229049 Downstream 31bp 22224 chrX 38229079 38229079 1 + G T UCEC 38229080 + 38229060 38229100 41 ATTGCAAGGGAAGTCCTTAGGCATGATTTTTGAGAAAAGAA ATTGCAAGGGAAGTCCTTATGCATGATTTTTGAGAAAAGAA < 41bp 0.655645217111646 0.883376310030564 NA NA prediction 0.455462185837835 Functional Gain - OTC ENSG00000036473 CDS Human protein_coding chrX:38229080 chrX:38229079 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_24122 0 0 0 0 2 OTC chrX:38229130 5'GT 38229130 Upstream 52bp 22225 chr2 183623609 183623609 1 + G T LUSC 183623610 + 183623590 183623630 41 CTTATTCCCTGAGAATCTGGGGTCTAGGGTGAGTAATTAAA CTTATTCCCTGAGAATCTGTGGTCTAGGGTGAGTAATTAAA < 41bp 0.413210411901828 0.727722573532623 NA NA prediction 0.455445147065247 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183623610 chr2:183623609 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24123 0 0 1 0 1 DNAJC10 chr2:183623564 3'AG 183623564 Downstream 46bp 22226 chr3 158376767 158376767 1 + G T TGCT 158376768 + 158376748 158376788 41 ATCAGGGAGAGCTAAAGAAGGGTGACACCATCTATAACACA ATCAGGGAGAGCTAAAGAATGGTGACACCATCTATAACACA < 41bp 0.653197023329181 0.880919484685145 NA NA prediction 0.455444922711929 Functional Gain - GFM1 ENSG00000168827 CDS Human protein_coding chr3:158376768 chr3:158376767 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_24124 0 0 1 0 1 GFM1 chr3:158376711 3'AG 158376711 Downstream 57bp 22227 chr4 106193760 106193760 1 + G T UCEC 106193761 + 106193741 106193781 41 AGACAATCGAGAATTTGGAGGAAAACCTGAGGATGAGCAGC AGACAATCGAGAATTTGGATGAAAACCTGAGGATGAGCAGC < 41bp 0.397474606676446 0.727676755170516 NA NA prediction 0.455353510341032 Functional Gain - TET2 ENSG00000168769 CDS Human protein_coding chr4:106193761 chr4:106193760 stopgain 0.947 0 20 hm7G_associated_SNPs_24128 0 0 1 0 1 TET2 chr4:106193721 3'AG 106193721 Downstream 40bp 22228 chr9 36162380 36162380 1 + G T LUAD 36162381 + 36162361 36162401 41 CACTTCACGGCCATGGTATGGAAGAACACCAAGAAGATGGG CACTTCACGGCCATGGTATTGAAGAACACCAAGAAGATGGG < 41bp 0.657732434406003 0.885405302266757 NA NA prediction 0.455345735721506 Functional Gain - GLIPR2 ENSG00000122694 CDS Human protein_coding chr9:36162381 chr9:36162380 nonsynonymous SNV 0.948 3 20 hm7G_associated_SNPs_24129 0 0 1 0 1 GLIPR2 chr9:36162359 3'AG 36162359 Downstream 22bp 22229 chr12 118838542 118838542 1 + G T UCEC 118838543 + 118838523 118838563 41 GTCCCCATCCCAGACAAGAGGAGGAAACCTGCTCCAGATAT GTCCCCATCCCAGACAAGATGAGGAAACCTGCTCCAGATAT < 41bp 0.402030173347241 0.727657925521686 NA NA prediction 0.455315851043373 Functional Gain - SUDS3 ENSG00000111707 CDS Human protein_coding chr12:118838543 chr12:118838542 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24131 0 0 1 0 1 SUDS3 chr12:118838464 3'AG 118838464 Downstream 79bp 22230 chr6 4056594 4056594 1 + G T LUAD 4056595 + 4056575 4056615 41 TTTAAAGCTTTGCGATTTTGGGTCGGCTTCACATGTTGCGG TTTAAAGCTTTGCGATTTTTGGTCGGCTTCACATGTTGCGG < 41bp 0.404360843959522 0.727652661165372 NA NA prediction 0.455305322330744 Functional Gain - PRPF4B ENSG00000112739 CDS Human protein_coding chr6:4056595 chr6:4056594 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_24132 0 0 1 2 2 PRPF4B chr6:4056555 3'AG 4056555 Downstream 40bp 22231 chr6 4056594 4056594 1 + G T LUAD 4056595 + 4056575 4056615 41 TTTAAAGCTTTGCGATTTTGGGTCGGCTTCACATGTTGCGG TTTAAAGCTTTGCGATTTTTGGTCGGCTTCACATGTTGCGG < 41bp 0.404360843959522 0.727652661165372 NA NA prediction 0.455305322330744 Functional Gain - PRPF4B ENSG00000112739 CDS Human protein_coding chr6:4056595 chr6:4056594 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_24132 0 0 1 2 2 PRPF4B chr6:4056669 5'GT 4056669 Upstream 76bp 22232 chr4 89571038 89571038 1 + G T LUSC 89571039 + 89571019 89571059 41 TATCATTCATGTGGCATGTGGCGAGTCCCACAGTCTGGCCC TATCATTCATGTGGCATGTTGCGAGTCCCACAGTCTGGCCC < 41bp 0.381658211419472 0.727643949955536 NA NA prediction 0.455287899911072 Functional Gain - HERC3 ENSG00000138641 CDS Human protein_coding chr4:89571039 chr4:89571038 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_24134 0 0 0 0 1 HERC3 chr4:89570991 3'AG 89570991 Downstream 48bp 22233 chr20 30674504 30674504 1 + G T OV 30674505 + 30674485 30674525 41 TGTCGGTGGAGGCCTTCCTGGCAGAGGCCAACGTGATGAAA TGTCGGTGGAGGCCTTCCTTGCAGAGGCCAACGTGATGAAA < 41bp 0.677672305475166 0.905301973359554 NA NA prediction 0.455259335768777 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30674505 chr20:30674504 synonymous SNV . 0 20 hm7G_associated_SNPs_24136 0 0 0 0 1 HCK chr20:30674431 3'AG 30674431 Downstream 74bp 22234 chr4 186278834 186278834 1 + G T COAD 186278835 + 186278815 186278855 41 TCTGTTTCAGTGTTTAAATGGGTGAGAAGAACATTAATTGC TCTGTTTCAGTGTTTAAATTGGTGAGAAGAACATTAATTGC < 41bp 0.653714728284441 0.881339680580262 NA NA prediction 0.455249904591641 Functional Gain - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186278835 chr4:186278834 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24137 0 0 1 0 1 SNX25 chr4:186278891 5'GT 186278891 Upstream 58bp 22235 chr4 184114803 184114803 1 + G T UCEC 184114804 + 184114784 184114824 41 TTGGGGATGAGCTGCCGTGGGGATGGGAAGCAGGGTTTGAC TTGGGGATGAGCTGCCGTGTGGATGGGAAGCAGGGTTTGAC < 41bp 0.658205220974364 0.885827194257379 NA NA prediction 0.455243946566029 Functional Gain - WWC2 ENSG00000151718 CDS Human protein_coding chr4:184114804 chr4:184114803 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24138 0 0 1 0 1 WWC2 chr4:184114861 5'GT 184114861 Upstream 59bp 22236 chr1 46489461 46489461 1 + G T LUSC 46489462 + 46489442 46489482 41 AGGGCTGTATTTCTGGTGCGGCACAAGTCCACCCGGCAGCG AGGGCTGTATTTCTGGTGCTGCACAAGTCCACCCGGCAGCG < 41bp 0.382691843457492 0.727613110096719 NA NA prediction 0.455226220193438 Functional Gain - MAST2 ENSG00000086015 CDS Human protein_coding chr1:46489462 chr1:46489461 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24139 0 0 1 0 1 MAST2 chr1:46489444 3'AG 46489444 Downstream 18bp 22237 chr17 42390845 42390845 1 + G T HNSC 42390846 + 42390826 42390866 41 TGTCAGAATACATCACCACGGCTCTGCGTGACACCCGGACC TGTCAGAATACATCACCACTGCTCTGCGTGACACCCGGACC < 41bp 0.678214998650024 0.905792624980724 NA NA prediction 0.455155252661398 Functional Gain - RUNDC3A ENSG00000108309 CDS Human protein_coding chr17:42390846 chr17:42390845 synonymous SNV . 0 20 hm7G_associated_SNPs_24141 0 0 0 0 2 RUNDC3A chr17:42390786 3'AG 42390786 Downstream 60bp 22238 chr17 42390845 42390845 1 + G T HNSC 42390846 + 42390826 42390866 41 TGTCAGAATACATCACCACGGCTCTGCGTGACACCCGGACC TGTCAGAATACATCACCACTGCTCTGCGTGACACCCGGACC < 41bp 0.678214998650024 0.905792624980724 NA NA prediction 0.455155252661398 Functional Gain - RUNDC3A ENSG00000108309 CDS Human protein_coding chr17:42390846 chr17:42390845 synonymous SNV . 0 20 hm7G_associated_SNPs_24141 0 0 0 0 2 RUNDC3A chr17:42390871 5'GT 42390871 Upstream 27bp 22239 chr3 52233305 52233305 1 + G T UCEC 52233306 + 52233286 52233326 41 TCTTATCCCGAGTCCCCCAGGCCTTTCTGCAGAAAGCAGGC TCTTATCCCGAGTCCCCCATGCCTTTCTGCAGAAAGCAGGC < 41bp 0.67461343554294 0.902189508257724 NA NA prediction 0.455152145429568 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233306 chr3:52233305 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_24142 0 0 1 0 2 ALAS1 chr3:52233226 3'AG 52233226 Downstream 80bp 22240 chr3 52233305 52233305 1 + G T UCEC 52233306 + 52233286 52233326 41 TCTTATCCCGAGTCCCCCAGGCCTTTCTGCAGAAAGCAGGC TCTTATCCCGAGTCCCCCATGCCTTTCTGCAGAAAGCAGGC < 41bp 0.67461343554294 0.902189508257724 NA NA prediction 0.455152145429568 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233306 chr3:52233305 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_24142 0 0 1 0 2 ALAS1 chr3:52233237 3'AG 52233237 Downstream 69bp 22241 chr14 35498332 35498332 1 + G T UCEC 35498333 + 35498313 35498353 41 TGCTGCTGGCAACATGAAAGGCATGATGGGATTCAATAATA TGCTGCTGGCAACATGAAATGCATGATGGGATTCAATAATA < 41bp 0.639949155306189 0.867520228230215 NA NA prediction 0.455142145848052 Functional Gain - SRP54 ENSG00000100883 CDS Human protein_coding chr14:35498333 chr14:35498332 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24143 0 0 1 0 1 SRP54 chr14:35498267 3'AG 35498267 Downstream 66bp 22242 chr18 43698219 43698219 1 + G T LUSC 43698220 + 43698200 43698240 41 CTCTCTAGCACTGGTTCCAGGTATCTGAATGCTTTGGTTGA CTCTCTAGCACTGGTTCCATGTATCTGAATGCTTTGGTTGA < 41bp 0.652460388339567 0.880022600339662 NA NA prediction 0.455124424000189 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43698220 chr18:43698219 nonsynonymous SNV 0.965 0 20 hm7G_associated_SNPs_24145 0 0 1 0 2 HAUS1 chr18:43698147 3'AG 43698147 Downstream 73bp 22243 chr18 43698219 43698219 1 + G T LUSC 43698220 + 43698200 43698240 41 CTCTCTAGCACTGGTTCCAGGTATCTGAATGCTTTGGTTGA CTCTCTAGCACTGGTTCCATGTATCTGAATGCTTTGGTTGA < 41bp 0.652460388339567 0.880022600339662 NA NA prediction 0.455124424000189 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43698220 chr18:43698219 nonsynonymous SNV 0.965 0 20 hm7G_associated_SNPs_24145 0 0 1 0 2 HAUS1 chr18:43698282 5'GT 43698282 Upstream 64bp 22244 chr11 65389747 65389747 1 + G T UCEC 65389748 + 65389728 65389768 41 ATGGAAGAAGCGCCACCCCGGGCCCAGCATAGTTACAAGTA ATGGAAGAAGCGCCACCCCTGGCCCAGCATAGTTACAAGTA < 41bp 0.377322282329755 0.727562122162527 NA NA prediction 0.455124244325054 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65389748 chr11:65389747 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_24146 0 0 1 0 2 PCNX3 chr11:65389716 3'AG 65389716 Downstream 32bp 22245 chr11 65389747 65389747 1 + G T UCEC 65389748 + 65389728 65389768 41 ATGGAAGAAGCGCCACCCCGGGCCCAGCATAGTTACAAGTA ATGGAAGAAGCGCCACCCCTGGCCCAGCATAGTTACAAGTA < 41bp 0.377322282329755 0.727562122162527 NA NA prediction 0.455124244325054 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65389748 chr11:65389747 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_24146 0 0 1 0 2 PCNX3 chr11:65389837 5'GT 65389837 Upstream 91bp 22246 chr13 49047512 49047512 1 + G T CESC 49047513 + 49047493 49047533 41 CAGAATCTTAGTATCAATTGGTGAATCATTCGGGGTGAGTA CAGAATCTTAGTATCAATTTGTGAATCATTCGGGGTGAGTA < 41bp 0.428877503709404 0.727549976634456 NA NA prediction 0.455099953268912 Functional Gain - RB1 ENSG00000139687 CDS Human protein_coding chr13:49047513 chr13:49047512 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24148 0 0 1 0 2 RB1 chr13:49047496 3'AG 49047496 Downstream 17bp 22247 chr13 49047512 49047512 1 + G T CESC 49047513 + 49047493 49047533 41 CAGAATCTTAGTATCAATTGGTGAATCATTCGGGGTGAGTA CAGAATCTTAGTATCAATTTGTGAATCATTCGGGGTGAGTA < 41bp 0.428877503709404 0.727549976634456 NA NA prediction 0.455099953268912 Functional Gain - RB1 ENSG00000139687 CDS Human protein_coding chr13:49047513 chr13:49047512 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24148 0 0 1 0 2 RB1 chr13:49047526 5'GT 49047526 Upstream 15bp 22248 chr15 64710917 64710917 1 + G T UCEC 64710918 + 64710898 64710938 41 GGCTTCTCTGCTTGTCAGAGGGATTAAAAGGTAAGAATAAA GGCTTCTCTGCTTGTCAGATGGATTAAAAGGTAAGAATAAA < 41bp 0.659208190974215 0.886733782608438 NA NA prediction 0.455051183268445 Functional Gain - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64710918 chr15:64710917 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_24150 0 0 0 0 1 TRIP4 chr15:64710927 5'GT 64710927 Upstream 11bp 22249 chr9 131285000 131285000 1 + G T THCA 131285001 + 131284981 131285021 41 GGAAGGTGCAAGCCCTCTCGGAGATGGCATCTGAACAACTG GGAAGGTGCAAGCCCTCTCTGAGATGGCATCTGAACAACTG < 41bp 0.38246299668473 0.727517650591892 NA NA prediction 0.455035301183784 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131285001 chr9:131285000 synonymous SNV . 0 20 hm7G_associated_SNPs_24151 0 0 1 0 2 GLE1 chr9:131284947 3'AG 131284947 Downstream 54bp 22250 chr9 131285000 131285000 1 + G T THCA 131285001 + 131284981 131285021 41 GGAAGGTGCAAGCCCTCTCGGAGATGGCATCTGAACAACTG GGAAGGTGCAAGCCCTCTCTGAGATGGCATCTGAACAACTG < 41bp 0.38246299668473 0.727517650591892 NA NA prediction 0.455035301183784 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131285001 chr9:131285000 synonymous SNV . 0 20 hm7G_associated_SNPs_24151 0 0 1 0 2 GLE1 chr9:131285095 5'GT 131285095 Upstream 96bp 22251 chr15 45427483 45427483 1 + G T COAD 45427484 + 45427464 45427504 41 GGAGTCCCAGCAATCCCCGGGACCCGGTGAGGCGGGGAAGG GGAGTCCCAGCAATCCCCGTGACCCGGTGAGGCGGGGAAGG < 41bp 0.379618058658863 0.727495904917698 NA NA prediction 0.454991809835396 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427484 chr15:45427483 synonymous SNV . 0 20 hm7G_associated_SNPs_24154 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 7bp 22252 chr9 126128524 126128524 1 + G A STAD 126128525 + 126128505 126128545 41 GGTTCCGGTGCGACTGCGCGGGCACCGGCTACGAGGGCACG GGTTCCGGTGCGACTGCGCAGGCACCGGCTACGAGGGCACG < 41bp 0.496131287780067 0.727495724134655 NA NA prediction 0.45499144826931 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126128525 chr9:126128524 synonymous SNV . 0 20 hm7G_associated_SNPs_24155 0 0 0 0 1 CRB2 chr9:126128506 3'AG 126128506 Downstream 19bp 22253 chr5 94918809 94918809 1 + G T UCEC 94918810 + 94918790 94918830 41 AACCATTTGTTATTTACTTGGGATTAAATTTACCACACCCT AACCATTTGTTATTTACTTTGGATTAAATTTACCACACCCT < 41bp 0.405122707797241 0.727492419542159 NA NA prediction 0.454984839084317 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94918810 chr5:94918809 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_24156 0 0 1 0 1 ARSK chr5:94918902 5'GT 94918902 Upstream 94bp 22254 chrX 22129615 22129615 1 + G T LUSC 22129616 + 22129596 22129636 41 ACTATTTGGTGTGGAGAATGGTTTATTCCAGAATTCCAAAC ACTATTTGGTGTGGAGAATTGTTTATTCCAGAATTCCAAAC < 41bp 0.39735097423023 0.727471723505343 NA NA prediction 0.454943447010686 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22129616 chrX:22129615 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24157 0 0 0 0 1 PHEX chrX:22129585 3'AG 22129585 Downstream 31bp 22255 chr1 17256975 17256975 1 + G T LIHC 17256976 + 17256956 17256996 41 TCCGAGAACAGCTGGACCAGGCAGGCTCGGCCAACCAGGCT TCCGAGAACAGCTGGACCATGCAGGCTCGGCCAACCAGGCT < 41bp 0.376658870279426 0.72746294503329 NA NA prediction 0.45492589006658 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17256976 chr1:17256975 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_24159 0 0 1 0 1 CROCC chr1:17256924 3'AG 17256924 Downstream 52bp 22256 chr11 119057350 119057350 1 + G T COAD 119057351 + 119057331 119057371 41 GGTCTTCAGGAAGGAGACAGGATCCTGGCGGTGAACAATGA GGTCTTCAGGAAGGAGACATGATCCTGGCGGTGAACAATGA < 41bp 0.664851237638548 0.892298985786551 NA NA prediction 0.454895496296005 Functional Gain - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119057351 chr11:119057350 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_24161 0 0 0 0 1 PDZD3 chr11:119057399 5'GT 119057399 Upstream 50bp 22257 chr19 52877655 52877655 1 + G T LUSC 52877656 + 52877636 52877676 41 CAAACAATCCAGGTGGCAGGGAGTGCATCAAAGGTGTGAAC CAAACAATCCAGGTGGCAGTGAGTGCATCAAAGGTGTGAAC < 41bp 0.39922851117532 0.727430935633058 NA NA prediction 0.454861871266115 Functional Gain - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877656 chr19:52877655 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_24162 0 0 1 0 2 ZNF880 chr19:52877680 5'GT 52877680 Upstream 26bp 22258 chr19 52877655 52877655 1 + G T LUSC 52877656 + 52877636 52877676 41 CAAACAATCCAGGTGGCAGGGAGTGCATCAAAGGTGTGAAC CAAACAATCCAGGTGGCAGTGAGTGCATCAAAGGTGTGAAC < 41bp 0.39922851117532 0.727430935633058 NA NA prediction 0.454861871266115 Functional Gain - ZNF880 ENSG00000221923 CDS Human protein_coding chr19:52877656 chr19:52877655 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_24162 0 0 1 0 2 ZNF880 chr19:52877737 5'GT 52877737 Upstream 83bp 22259 chr5 140588603 140588603 1 + G T SKCM 140588604 + 140588584 140588624 41 GATGGAGGAATTGCAGAGCGGGAGCTTTGTAGGAAATTTGG GATGGAGGAATTGCAGAGCTGGAGCTTTGTAGGAAATTTGG < 41bp 0.64986547771887 0.877268940443874 NA NA prediction 0.454806925450007 Functional Gain - PCDHB12 ENSG00000120328 CDS Human protein_coding chr5:140588604 chr5:140588603 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_24163 0 0 0 0 1 PCDHB12 chr5:140588644 5'GT 140588644 Upstream 42bp 22260 chr20 13098352 13098352 1 + G T LUSC 13098353 + 13098333 13098373 41 AAGTTTTGGAGCTTCAGGAGGTTACATAGCTGGAAGGAAGG AAGTTTTGGAGCTTCAGGATGTTACATAGCTGGAAGGAAGG < 41bp 0.655315183297492 0.882711825511953 NA NA prediction 0.45479328442892 Functional Gain - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13098353 chr20:13098352 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_24164 0 0 0 0 1 SPTLC3 chr20:13098372 5'GT 13098372 Upstream 21bp 22261 chr17 40811931 40811931 1 + G T LGG 40811932 + 40811912 40811952 41 TGGAGGAATTCGCCACCGAGGGCACTGACCGCAAGGACGTC TGGAGGAATTCGCCACCGATGGCACTGACCGCAAGGACGTC < 41bp 0.614259724419133 0.841645278512265 NA NA prediction 0.454771108186264 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40811932 chr17:40811931 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24165 0 0 0 0 2 TUBG2 chr17:40811852 3'AG 40811852 Downstream 80bp 22262 chr17 40811931 40811931 1 + G T LGG 40811932 + 40811912 40811952 41 TGGAGGAATTCGCCACCGAGGGCACTGACCGCAAGGACGTC TGGAGGAATTCGCCACCGATGGCACTGACCGCAAGGACGTC < 41bp 0.614259724419133 0.841645278512265 NA NA prediction 0.454771108186264 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40811932 chr17:40811931 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24165 0 0 0 0 2 TUBG2 chr17:40811964 5'GT 40811964 Upstream 34bp 22263 chr16 14742401 14742401 1 + G T THCA 14742402 + 14742382 14742422 41 GCCGAGCGAATCAGCAGATGGGAGGGGGATTCTTTTCCGGT GCCGAGCGAATCAGCAGATTGGAGGGGGATTCTTTTCCGGT < 41bp 0.668829164350824 0.896205736618119 NA NA prediction 0.454753144534592 Functional Gain - BFAR ENSG00000103429 CDS Human protein_coding chr16:14742402 chr16:14742401 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_24166 0 0 1 0 1 BFAR chr16:14742449 5'GT 14742449 Upstream 49bp 22264 chr15 22929769 22929769 1 + G T STAD 22929770 + 22929750 22929790 41 CGCCTGTGCCATGCCGAGAGGAGGAAGGACTTCGTGTCAGA CGCCTGTGCCATGCCGAGATGAGGAAGGACTTCGTGTCAGA < 41bp 0.382459512855885 0.727373810429019 NA NA prediction 0.454747620858039 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22929770 chr15:22929769 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_24169 0 0 1 0 1 CYFIP1 chr15:22929714 3'AG 22929714 Downstream 56bp 22265 chr8 146029559 146029559 1 + G T UCEC 146029560 + 146029540 146029580 41 CCCTATTGGAGCAAGGAGAGGAGCCGGGGGCCTTGATTCTG CCCTATTGGAGCAAGGAGATGAGCCGGGGGCCTTGATTCTG < 41bp 0.499147994568614 0.727370261570694 NA NA prediction 0.454740523141387 Functional Gain - ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146029560 chr8:146029559 nonsynonymous SNV 0.131 0 20 hm7G_associated_SNPs_24170 0 0 0 0 2 ZNF517 chr8:146029510 3'AG 146029510 Downstream 50bp 22266 chr8 146029559 146029559 1 + G T UCEC 146029560 + 146029540 146029580 41 CCCTATTGGAGCAAGGAGAGGAGCCGGGGGCCTTGATTCTG CCCTATTGGAGCAAGGAGATGAGCCGGGGGCCTTGATTCTG < 41bp 0.499147994568614 0.727370261570694 NA NA prediction 0.454740523141387 Functional Gain - ZNF517 ENSG00000197363 CDS Human protein_coding chr8:146029560 chr8:146029559 nonsynonymous SNV 0.131 0 20 hm7G_associated_SNPs_24170 0 0 0 0 2 ZNF517 chr8:146029623 5'GT 146029623 Upstream 65bp 22267 chr16 57447847 57447847 1 + G A PRAD 57447848 + 57447828 57447868 41 CCTGGGCTCCTGGCACCATGGCCCCACTGAAGATGCTGGCC CCTGGGCTCCTGGCACCATAGCCCCACTGAAGATGCTGGCC < 41bp 0.532753136796381 0.760095496813281 NA NA prediction 0.4546847200338 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57447848 chr16:57447847 nonsynonymous SNV 0.031 0 20 hm7G_associated_SNPs_24174 0 0 0 0 3 CCL17 chr16:57447783 3'AG 57447783 Downstream 65bp 22268 chr16 57447847 57447847 1 + G A PRAD 57447848 + 57447828 57447868 41 CCTGGGCTCCTGGCACCATGGCCCCACTGAAGATGCTGGCC CCTGGGCTCCTGGCACCATAGCCCCACTGAAGATGCTGGCC < 41bp 0.532753136796381 0.760095496813281 NA NA prediction 0.4546847200338 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57447848 chr16:57447847 nonsynonymous SNV 0.031 0 20 hm7G_associated_SNPs_24174 0 0 0 0 3 CCL17 chr16:57447786 3'AG 57447786 Downstream 62bp 22269 chr16 57447847 57447847 1 + G A PRAD 57447848 + 57447828 57447868 41 CCTGGGCTCCTGGCACCATGGCCCCACTGAAGATGCTGGCC CCTGGGCTCCTGGCACCATAGCCCCACTGAAGATGCTGGCC < 41bp 0.532753136796381 0.760095496813281 NA NA prediction 0.4546847200338 Functional Gain - CCL17 ENSG00000102970 CDS Human protein_coding chr16:57447848 chr16:57447847 nonsynonymous SNV 0.031 0 20 hm7G_associated_SNPs_24174 0 0 0 0 3 CCL17 chr16:57447914 5'GT 57447914 Upstream 68bp 22270 chr20 2840965 2840965 1 + G T BRCA 2840966 + 2840946 2840986 41 AGGAAGATGGTGCTGTACTGGTTTATGGGCTTCATGGTGAC AGGAAGATGGTGCTGTACTTGTTTATGGGCTTCATGGTGAC < 41bp 0.383962531047141 0.72734014697029 NA NA prediction 0.454680293940579 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840966 chr20:2840965 synonymous SNV . 0 20 hm7G_associated_SNPs_24175 0 0 1 0 2 VPS16 chr20:2840885 3'AG 2840885 Downstream 81bp 22271 chr20 2840965 2840965 1 + G T BRCA 2840966 + 2840946 2840986 41 AGGAAGATGGTGCTGTACTGGTTTATGGGCTTCATGGTGAC AGGAAGATGGTGCTGTACTTGTTTATGGGCTTCATGGTGAC < 41bp 0.383962531047141 0.72734014697029 NA NA prediction 0.454680293940579 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840966 chr20:2840965 synonymous SNV . 0 20 hm7G_associated_SNPs_24175 0 0 1 0 2 VPS16 chr20:2841013 5'GT 2841013 Upstream 49bp 22272 chrX 135095153 135095153 1 + G T UCEC 135095154 + 135095134 135095174 41 GTTCCAGTTGTTGGAGACAGGCCTGTTCTTCTTGATGTCCT GTTCCAGTTGTTGGAGACATGCCTGTTCTTCTTGATGTCCT < 41bp 0.393082038051075 0.727340126800544 NA NA prediction 0.454680253601088 Functional Gain - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135095154 chrX:135095153 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_24176 0 0 0 0 1 SLC9A6 chrX:135095213 5'GT 135095213 Upstream 61bp 22273 chr16 1388958 1388958 1 + G T HNSC 1388959 + 1388939 1388979 41 GCGCCTCATGCTGAAGAAGGGGGAAGGCAGACAGGGCTTGC GCGCCTCATGCTGAAGAAGTGGGAAGGCAGACAGGGCTTGC < 41bp 0.671921266148047 0.899256019963158 NA NA prediction 0.454669507630223 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1388959 chr16:1388958 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24177 0 0 0 0 2 BAIAP3 chr16:1388903 3'AG 1388903 Downstream 56bp 22274 chr16 1388958 1388958 1 + G T HNSC 1388959 + 1388939 1388979 41 GCGCCTCATGCTGAAGAAGGGGGAAGGCAGACAGGGCTTGC GCGCCTCATGCTGAAGAAGTGGGAAGGCAGACAGGGCTTGC < 41bp 0.671921266148047 0.899256019963158 NA NA prediction 0.454669507630223 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1388959 chr16:1388958 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24177 0 0 0 0 2 BAIAP3 chr16:1388990 5'GT 1388990 Upstream 33bp 22275 chr13 73428225 73428225 1 + G T UCEC 73428226 + 73428206 73428246 41 AAGCAAGGGATAATGCTGTGGCTGAAAAGGAACGAGCAGTG AAGCAAGGGATAATGCTGTTGCTGAAAAGGAACGAGCAGTG < 41bp 0.658011568011963 0.885342823533172 NA NA prediction 0.454662511042419 Functional Gain - PIBF1 ENSG00000083535 CDS Human protein_coding chr13:73428226 chr13:73428225 synonymous SNV . 0 20 hm7G_associated_SNPs_24178 0 0 1 0 2 PIBF1 chr13:73428195 3'AG 73428195 Downstream 31bp 22276 chr13 73428225 73428225 1 + G T UCEC 73428226 + 73428206 73428246 41 AAGCAAGGGATAATGCTGTGGCTGAAAAGGAACGAGCAGTG AAGCAAGGGATAATGCTGTTGCTGAAAAGGAACGAGCAGTG < 41bp 0.658011568011963 0.885342823533172 NA NA prediction 0.454662511042419 Functional Gain - PIBF1 ENSG00000083535 CDS Human protein_coding chr13:73428226 chr13:73428225 synonymous SNV . 0 20 hm7G_associated_SNPs_24178 0 0 1 0 2 PIBF1 chr13:73428293 5'GT 73428293 Upstream 69bp 22277 chr19 38855542 38855542 1 + G T UCEC 38855543 + 38855523 38855563 41 AACCCCAGATTACGCTCAAGGATAAAAAGCTTTGCTATGAC AACCCCAGATTACGCTCAATGATAAAAAGCTTTGCTATGAC < 41bp 0.394460624502799 0.727328237872372 NA NA prediction 0.454656475744744 Functional Gain - CATSPERG ENSG00000099338 CDS Human protein_coding chr19:38855543 chr19:38855542 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_24179 0 0 0 0 2 CATSPERG chr19:38855531 3'AG 38855531 Downstream 12bp 22278 chr19 38855542 38855542 1 + G T UCEC 38855543 + 38855523 38855563 41 AACCCCAGATTACGCTCAAGGATAAAAAGCTTTGCTATGAC AACCCCAGATTACGCTCAATGATAAAAAGCTTTGCTATGAC < 41bp 0.394460624502799 0.727328237872372 NA NA prediction 0.454656475744744 Functional Gain - CATSPERG ENSG00000099338 CDS Human protein_coding chr19:38855543 chr19:38855542 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_24179 0 0 0 0 2 CATSPERG chr19:38855611 5'GT 38855611 Upstream 70bp 22279 chr19 14067016 14067016 1 + G A rs77916080 14067017 + 14066997 14067037 41 ACATCTACGTCAGCACCGTGGCCGTGCCACCGCCAGGCCGC ACATCTACGTCAGCACCGTAGCCGTGCCACCGCCAGGCCGC < 41bp 0.519184644752667 0.746500240087778 NA NA prediction 0.454631190670223 Functional Gain - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14067017 chr19:14067016 synonymous SNV . 0 20 hm7G_associated_SNPs_24180 0 0 1 0 2 DCAF15 chr19:14066935 3'AG 14066935 Downstream 82bp 22280 chr19 14067016 14067016 1 + G A rs77916080 14067017 + 14066997 14067037 41 ACATCTACGTCAGCACCGTGGCCGTGCCACCGCCAGGCCGC ACATCTACGTCAGCACCGTAGCCGTGCCACCGCCAGGCCGC < 41bp 0.519184644752667 0.746500240087778 NA NA prediction 0.454631190670223 Functional Gain - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14067017 chr19:14067016 synonymous SNV . 0 20 hm7G_associated_SNPs_24180 0 0 1 0 2 DCAF15 chr19:14067074 5'GT 14067074 Upstream 59bp 22281 chr6 43405672 43405672 1 + G T SARC 43405673 + 43405653 43405693 41 TTGTGTGGCTTCCTTGCAGGGTATGCTGGTGGGCATCGTGG TTGTGTGGCTTCCTTGCAGTGTATGCTGGTGGGCATCGTGG < 41bp 0.381146983226589 0.727306487116712 NA NA prediction 0.454612974233424 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43405673 chr6:43405672 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24181 0 0 1 0 2 ABCC10 chr6:43405672 5'GT 43405672 Upstream 1bp 22282 chr6 43405672 43405672 1 + G T SARC 43405673 + 43405653 43405693 41 TTGTGTGGCTTCCTTGCAGGGTATGCTGGTGGGCATCGTGG TTGTGTGGCTTCCTTGCAGTGTATGCTGGTGGGCATCGTGG < 41bp 0.381146983226589 0.727306487116712 NA NA prediction 0.454612974233424 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43405673 chr6:43405672 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24181 0 0 1 0 2 ABCC10 chr6:43405751 5'GT 43405751 Upstream 80bp 22283 chr3 148880091 148880091 1 + G T LUSC 148880092 + 148880072 148880112 41 GCAGAAGAACAACAAAATTGGAATTGAAGAAGCAGATTCCT GCAGAAGAACAACAAAATTTGAATTGAAGAAGCAGATTCCT < 41bp 0.660465686888826 0.887750476601522 NA NA prediction 0.45456957942539 Functional Gain - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148880092 chr3:148880091 stopgain 0.998 0 20 hm7G_associated_SNPs_24184 0 0 0 0 1 HPS3 chr3:148880120 5'GT 148880120 Upstream 30bp 22284 chr5 52204835 52204835 1 + G T STAD 52204836 + 52204816 52204856 41 ACATGGGAACAGAGAAGGAGGAGCAAGGAAAAGTGTATGTG ACATGGGAACAGAGAAGGATGAGCAAGGAAAAGTGTATGTG < 41bp 0.662568775897075 0.88985297344996 NA NA prediction 0.454568395105771 Functional Gain - ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52204836 chr5:52204835 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_24185 0 0 1 0 1 ITGA1 chr5:52204871 5'GT 52204871 Upstream 37bp 22285 chr19 49131491 49131491 1 + G A UCEC 49131492 + 49131472 49131512 41 TGTGGGCATCCTCCCCTGCGGCTCGGGCAACGCGCTGGCCG TGTGGGCATCCTCCCCTGCAGCTCGGGCAACGCGCTGGCCG < 41bp 0.506932159801647 0.734207265054117 NA NA prediction 0.454550210504941 Functional Gain - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49131492 chr19:49131491 nonsynonymous SNV 0.919 5 20 hm7G_associated_SNPs_24187 0 0 0 0 2 SPHK2 chr19:49131419 3'AG 49131419 Downstream 73bp 22286 chr19 49131491 49131491 1 + G A UCEC 49131492 + 49131472 49131512 41 TGTGGGCATCCTCCCCTGCGGCTCGGGCAACGCGCTGGCCG TGTGGGCATCCTCCCCTGCAGCTCGGGCAACGCGCTGGCCG < 41bp 0.506932159801647 0.734207265054117 NA NA prediction 0.454550210504941 Functional Gain - SPHK2 ENSG00000063176 CDS Human protein_coding chr19:49131492 chr19:49131491 nonsynonymous SNV 0.919 5 20 hm7G_associated_SNPs_24187 0 0 0 0 2 SPHK2 chr19:49131534 5'GT 49131534 Upstream 44bp 22287 chr5 176304610 176304610 1 + G T UCEC 176304611 + 176304591 176304631 41 CCTGGCGTCCTGCTCACCCGGCCAGTCATCCTGGCTATGGA CCTGGCGTCCTGCTCACCCTGCCAGTCATCCTGGCTATGGA < 41bp 0.370740034186297 0.727254996138263 NA NA prediction 0.454509992276526 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304611 chr5:176304610 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_24191 0 0 0 0 2 UNC5A chr5:176304536 3'AG 176304536 Downstream 75bp 22288 chr5 176304610 176304610 1 + G T UCEC 176304611 + 176304591 176304631 41 CCTGGCGTCCTGCTCACCCGGCCAGTCATCCTGGCTATGGA CCTGGCGTCCTGCTCACCCTGCCAGTCATCCTGGCTATGGA < 41bp 0.370740034186297 0.727254996138263 NA NA prediction 0.454509992276526 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176304611 chr5:176304610 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_24191 0 0 0 0 2 UNC5A chr5:176304704 5'GT 176304704 Upstream 95bp 22289 chr8 145726099 145726099 1 + G A SKCM 145726100 + 145726080 145726120 41 GGAGCTGCTCGTGGCGCACGGGGCCGACCTGAACGCAAAGT GGAGCTGCTCGTGGCGCACAGGGCCGACCTGAACGCAAAGT < 41bp 0.504914838669005 0.732154800232017 NA NA prediction 0.454479923126022 Functional Gain - PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145726100 chr8:145726099 nonsynonymous SNV 0.391 4 20 hm7G_associated_SNPs_24193 0 0 1 0 2 PPP1R16A chr8:145726069 3'AG 145726069 Downstream 31bp 22290 chr8 145726099 145726099 1 + G A SKCM 145726100 + 145726080 145726120 41 GGAGCTGCTCGTGGCGCACGGGGCCGACCTGAACGCAAAGT GGAGCTGCTCGTGGCGCACAGGGCCGACCTGAACGCAAAGT < 41bp 0.504914838669005 0.732154800232017 NA NA prediction 0.454479923126022 Functional Gain - PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145726100 chr8:145726099 nonsynonymous SNV 0.391 4 20 hm7G_associated_SNPs_24193 0 0 1 0 2 PPP1R16A chr8:145726144 5'GT 145726144 Upstream 46bp 22291 chr14 24423031 24423031 1 - C A rs1043438 24423030 - 24423010 24423050 41 CGCACCGAATTCCAAGCCCGGGCACAGAGGCCTAGCAGCCC CGCACCGAATTCCAAGCCCTGGCACAGAGGCCTAGCAGCCC < 41bp 0.403167587817881 0.727229349133437 NA NA prediction 0.454458698266874 Functional Gain - DHRS4 ENSG00000157326 CDS Human antisense chr14:24423030 chr14:24423031 synonymous SNV . 0 20 hm7G_associated_SNPs_24195 0 0 0 0 1 DHRS4-AS1 chr14:24422983 5'GT 24422983 Upstream 49bp 22292 chr11 125617689 125617689 1 + G T UCEC 125617690 + 125617670 125617710 41 GCACAGCAACAACAGAAGAGGCCTGCATGGTTGGAAGGATG GCACAGCAACAACAGAAGATGCCTGCATGGTTGGAAGGATG < 41bp 0.655140613169833 0.882353522420046 NA NA prediction 0.454425818500426 Functional Gain - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617690 chr11:125617689 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_24198 0 0 0 0 2 PATE1 chr11:125617595 3'AG 125617595 Downstream 95bp 22293 chr11 125617689 125617689 1 + G T UCEC 125617690 + 125617670 125617710 41 GCACAGCAACAACAGAAGAGGCCTGCATGGTTGGAAGGATG GCACAGCAACAACAGAAGATGCCTGCATGGTTGGAAGGATG < 41bp 0.655140613169833 0.882353522420046 NA NA prediction 0.454425818500426 Functional Gain - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617690 chr11:125617689 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_24198 0 0 0 0 2 PATE1 chr11:125617717 5'GT 125617717 Upstream 29bp 22294 chr19 7528751 7528751 1 + G A COAD 7528752 + 7528732 7528772 41 GCAGCTGGGCAGCGCCAACGGCCAGGCGGAAGACGGAGGCA GCAGCTGGGCAGCGCCAACAGCCAGGCGGAAGACGGAGGCA < 41bp 0.490766616960798 0.727211192475139 NA NA prediction 0.454422384950278 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7528752 chr19:7528751 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_24199 0 0 0 0 1 ARHGEF18 chr19:7528704 3'AG 7528704 Downstream 48bp 22295 chr1 17603297 17603297 1 + G T LUAD 17603298 + 17603278 17603318 41 ATGCTCCTGGCCAGCCCTGGGGCCTGCTTCAAGCTCTTCCA ATGCTCCTGGCCAGCCCTGTGGCCTGCTTCAAGCTCTTCCA < 41bp 0.377906495313972 0.727182910954928 NA NA prediction 0.454365821909856 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603298 chr1:17603297 nonsynonymous SNV 0.015 0 20 hm7G_associated_SNPs_24205 0 0 0 0 2 PADI3 chr1:17603269 3'AG 17603269 Downstream 29bp 22296 chr1 17603297 17603297 1 + G T LUAD 17603298 + 17603278 17603318 41 ATGCTCCTGGCCAGCCCTGGGGCCTGCTTCAAGCTCTTCCA ATGCTCCTGGCCAGCCCTGTGGCCTGCTTCAAGCTCTTCCA < 41bp 0.377906495313972 0.727182910954928 NA NA prediction 0.454365821909856 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17603298 chr1:17603297 nonsynonymous SNV 0.015 0 20 hm7G_associated_SNPs_24205 0 0 0 0 2 PADI3 chr1:17603371 5'GT 17603371 Upstream 75bp 22297 chr20 29628244 29628244 1 + G T UCEC 29628245 + 29628225 29628265 41 AGGGGAAAATGGCTTTGTTGGCCTCAAATAGCTGCTTTATT AGGGGAAAATGGCTTTGTTTGCCTCAAATAGCTGCTTTATT < 41bp 0.397114370704837 0.727174837487086 NA NA prediction 0.454349674974173 Functional Gain - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628245 chr20:29628244 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_24206 0 0 0 0 2 FRG1BP;FRG1DP chr20:29628227 3'AG 29628227 Downstream 18bp 22298 chr20 29628244 29628244 1 + G T UCEC 29628245 + 29628225 29628265 41 AGGGGAAAATGGCTTTGTTGGCCTCAAATAGCTGCTTTATT AGGGGAAAATGGCTTTGTTTGCCTCAAATAGCTGCTTTATT < 41bp 0.397114370704837 0.727174837487086 NA NA prediction 0.454349674974173 Functional Gain - FRG1BP;FRG1DP ENSG00000149531 CDS Human unprocessed_pseudogene chr20:29628245 chr20:29628244 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_24206 0 0 0 0 2 FRG1BP;FRG1DP chr20:29628331 5'GT 29628331 Upstream 88bp 22299 chr15 40684173 40684173 1 + G T GBM 40684174 + 40684154 40684194 41 TGTTAGAAACTTTGCAAGAGGAGCTGAAGCTTTTTAACGAA TGTTAGAAACTTTGCAAGATGAGCTGAAGCTTTTTAACGAA < 41bp 0.655907707050681 0.883045038415032 NA NA prediction 0.454274662728702 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40684174 chr15:40684173 stopgain 0.897 0 20 hm7G_associated_SNPs_24209 0 0 1 0 2 KNSTRN chr15:40684150 3'AG 40684150 Downstream 24bp 22300 chr15 40684173 40684173 1 + G T GBM 40684174 + 40684154 40684194 41 TGTTAGAAACTTTGCAAGAGGAGCTGAAGCTTTTTAACGAA TGTTAGAAACTTTGCAAGATGAGCTGAAGCTTTTTAACGAA < 41bp 0.655907707050681 0.883045038415032 NA NA prediction 0.454274662728702 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40684174 chr15:40684173 stopgain 0.897 0 20 hm7G_associated_SNPs_24209 0 0 1 0 2 KNSTRN chr15:40684224 5'GT 40684224 Upstream 52bp 22301 chr9 138678124 138678124 1 + G T COAD 138678125 + 138678105 138678145 41 CTCCCGCGCTGGCACCGGAGGCAGCTCCCAGGGCCGCCACA CTCCCGCGCTGGCACCGGATGCAGCTCCCAGGGCCGCCACA < 41bp 0.380393040913758 0.727108597217998 NA NA prediction 0.454217194435996 Functional Gain - KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138678125 chr9:138678124 nonsynonymous SNV 0.079 0 20 hm7G_associated_SNPs_24213 0 0 0 0 1 KCNT1 chr9:138678043 3'AG 138678043 Downstream 82bp 22302 chr13 99038018 99038018 1 + G T LUSC 99038019 + 99037999 99038039 41 CCCGGCCAAGGACAGGGAAGGCACGAAGATCAATCTGGCCG CCCGGCCAAGGACAGGGAATGCACGAAGATCAATCTGGCCG < 41bp 0.38465081950851 0.727105891223216 NA NA prediction 0.454211782446432 Functional Gain - FARP1 ENSG00000152767 CDS Human protein_coding chr13:99038019 chr13:99038018 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_24214 0 0 1 0 2 FARP1 chr13:99037921 3'AG 99037921 Downstream 98bp 22303 chr13 99038018 99038018 1 + G T LUSC 99038019 + 99037999 99038039 41 CCCGGCCAAGGACAGGGAAGGCACGAAGATCAATCTGGCCG CCCGGCCAAGGACAGGGAATGCACGAAGATCAATCTGGCCG < 41bp 0.38465081950851 0.727105891223216 NA NA prediction 0.454211782446432 Functional Gain - FARP1 ENSG00000152767 CDS Human protein_coding chr13:99038019 chr13:99038018 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_24214 0 0 1 0 2 FARP1 chr13:99038068 5'GT 99038068 Upstream 51bp 22304 chr17 38297833 38297833 1 + G T LUAD 38297834 + 38297814 38297854 41 TTATTTCAGCTGTTCTCTCGGATTATGAAAGTGCAGAAGAC TTATTTCAGCTGTTCTCTCTGATTATGAAAGTGCAGAAGAC < 41bp 0.657410608754365 0.884504296529118 NA NA prediction 0.454187375549505 Functional Gain - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38297834 chr17:38297833 synonymous SNV . 0 20 hm7G_associated_SNPs_24216 0 0 1 0 2 CASC3 chr17:38297823 3'AG 38297823 Downstream 11bp 22305 chr17 38297833 38297833 1 + G T LUAD 38297834 + 38297814 38297854 41 TTATTTCAGCTGTTCTCTCGGATTATGAAAGTGCAGAAGAC TTATTTCAGCTGTTCTCTCTGATTATGAAAGTGCAGAAGAC < 41bp 0.657410608754365 0.884504296529118 NA NA prediction 0.454187375549505 Functional Gain - CASC3 ENSG00000108349 CDS Human protein_coding chr17:38297834 chr17:38297833 synonymous SNV . 0 20 hm7G_associated_SNPs_24216 0 0 1 0 2 CASC3 chr17:38297860 5'GT 38297860 Upstream 28bp 22306 chr16 67688796 67688796 1 + G T STAD 67688797 + 67688777 67688817 41 GGGGGTGCCGAAGGCAAGAGGAAGCAAGTGAGTTGAGGGGA GGGGGTGCCGAAGGCAAGATGAAGCAAGTGAGTTGAGGGGA < 41bp 0.660999918798966 0.88807406280619 NA NA prediction 0.454148288014448 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67688797 chr16:67688796 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_24219 0 0 0 0 1 CARMIL2 chr16:67688803 5'GT 67688803 Upstream 8bp 22307 chr12 3649947 3649947 1 + G T GBM 3649948 + 3649928 3649968 41 GACTCCTATGCCCACTTTGGGATCCACGAGGTAAAGTGTCC GACTCCTATGCCCACTTTGTGATCCACGAGGTAAAGTGTCC < 41bp 0.386075247546658 0.727064796651366 NA NA prediction 0.454129593302731 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3649948 chr12:3649947 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_24220 0 0 0 0 1 PRMT8 chr12:3649957 5'GT 3649957 Upstream 11bp 22308 chr1 2419046 2419046 1 + G A SKCM 2419047 + 2419027 2419067 41 CCGCCTGCAGTGGACTGCTGGGATGGGCCCGACGGGGAGCC CCGCCTGCAGTGGACTGCTAGGATGGGCCCGACGGGGAGCC < 41bp 0.504314668557285 0.731374011533729 NA NA prediction 0.454118685952889 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2419047 chr1:2419046 stopgain 0.998 1 20 hm7G_associated_SNPs_24222 0 0 0 0 1 PLCH2 chr1:2419037 3'AG 2419037 Downstream 10bp 22309 chr15 29397623 29397623 1 + G T COAD 29397624 + 29397604 29397644 41 TCGGCCAGGCCTTCAGCGTGGCCTACCAGGAGTTCCTGCGA TCGGCCAGGCCTTCAGCGTTGCCTACCAGGAGTTCCTGCGA < 41bp 0.374804435768833 0.727044250639916 NA NA prediction 0.454088501279832 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29397624 chr15:29397623 synonymous SNV . 0 20 hm7G_associated_SNPs_24224 0 0 0 0 1 APBA2 chr15:29397582 3'AG 29397582 Downstream 42bp 22310 chr6 126295996 126295996 1 + G T rs145709677 126295997 + 126295977 126296017 41 TTACTTTCTATTTTAGGATGGGTTTTCATATGCCACCATTC TTACTTTCTATTTTAGGATTGGTTTTCATATGCCACCATTC < 41bp 0.654100176678667 0.881120507814464 NA NA prediction 0.454040662271594 Functional Gain - HINT3 ENSG00000111911 CDS Human protein_coding chr6:126295997 chr6:126295996 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24225 0 0 1 0 1 HINT3 chr6:126295993 3'AG 126295993 Downstream 4bp 22311 chr11 63276393 63276393 1 + G A SKCM 63276394 + 63276374 63276414 41 TGGCAAAGGGAGGCCCGGTGGCCCCACCTGGCCCTGCGAAG TGGCAAAGGGAGGCCCGGTAGCCCCACCTGGCCCTGCGAAG < 41bp 0.501921310037733 0.728925630016125 NA NA prediction 0.454008639956784 Functional Gain - LGALS12 ENSG00000133317 CDS Human protein_coding chr11:63276394 chr11:63276393 stopgain 0.815 1 20 hm7G_associated_SNPs_24227 0 0 0 0 1 LGALS12 chr11:63276463 5'GT 63276463 Upstream 71bp 22312 chr5 74065096 74065096 1 + G T UCEC 74065097 + 74065077 74065117 41 ATGATGAAAAGACACCACAGGGAGCAGTACCTGCCTATCTG ATGATGAAAAGACACCACATGGAGCAGTACCTGCCTATCTG < 41bp 0.65783449905721 0.884837778195607 NA NA prediction 0.454006558276796 Functional Gain - NSA2 ENSG00000164346 CDS Human protein_coding chr5:74065097 chr5:74065096 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_24228 0 0 1 0 2 NSA2 chr5:74065039 3'AG 74065039 Downstream 58bp 22313 chr5 74065096 74065096 1 + G T UCEC 74065097 + 74065077 74065117 41 ATGATGAAAAGACACCACAGGGAGCAGTACCTGCCTATCTG ATGATGAAAAGACACCACATGGAGCAGTACCTGCCTATCTG < 41bp 0.65783449905721 0.884837778195607 NA NA prediction 0.454006558276796 Functional Gain - NSA2 ENSG00000164346 CDS Human protein_coding chr5:74065097 chr5:74065096 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_24228 0 0 1 0 2 NSA2 chr5:74065189 5'GT 74065189 Upstream 94bp 22314 chr9 131702940 131702940 1 + G T SARC 131702941 + 131702921 131702961 41 GCCTGGTACCAGCTTCCTTGGGTCAGAGCCAGCCCGGGATA GCCTGGTACCAGCTTCCTTTGGTCAGAGCCAGCCCGGGATA < 41bp 0.68062533464092 0.907610594010805 NA NA prediction 0.453970518739771 Functional Gain - PHYHD1 ENSG00000175287 CDS Human protein_coding chr9:131702941 chr9:131702940 nonsynonymous SNV 0.912 0 20 hm7G_associated_SNPs_24229 0 0 0 0 2 PHYHD1 chr9:131702878 3'AG 131702878 Downstream 63bp 22315 chr9 131702940 131702940 1 + G T SARC 131702941 + 131702921 131702961 41 GCCTGGTACCAGCTTCCTTGGGTCAGAGCCAGCCCGGGATA GCCTGGTACCAGCTTCCTTTGGTCAGAGCCAGCCCGGGATA < 41bp 0.68062533464092 0.907610594010805 NA NA prediction 0.453970518739771 Functional Gain - PHYHD1 ENSG00000175287 CDS Human protein_coding chr9:131702941 chr9:131702940 nonsynonymous SNV 0.912 0 20 hm7G_associated_SNPs_24229 0 0 0 0 2 PHYHD1 chr9:131702994 5'GT 131702994 Upstream 55bp 22316 chr1 153658285 153658285 1 + G T LAML 153658286 + 153658266 153658306 41 CTCTCCCTCCTTTCAGAGAGGCTCCAATTACGGCTCCCTGC CTCTCCCTCCTTTCAGAGATGCTCCAATTACGGCTCCCTGC < 41bp 0.671610639777916 0.898591709575958 NA NA prediction 0.453962139596083 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153658286 chr1:153658285 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_24230 0 0 0 0 2 NPR1 chr1:153658282 3'AG 153658282 Downstream 4bp 22317 chr1 153658285 153658285 1 + G T LAML 153658286 + 153658266 153658306 41 CTCTCCCTCCTTTCAGAGAGGCTCCAATTACGGCTCCCTGC CTCTCCCTCCTTTCAGAGATGCTCCAATTACGGCTCCCTGC < 41bp 0.671610639777916 0.898591709575958 NA NA prediction 0.453962139596083 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153658286 chr1:153658285 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_24230 0 0 0 0 2 NPR1 chr1:153658356 5'GT 153658356 Upstream 72bp 22318 chr11 66813327 66813327 1 + G T SARC 66813328 + 66813308 66813348 41 ACGAAGCCATGATCTTCTCGGTGCCAGCCATTGTGCTCCAG ACGAAGCCATGATCTTCTCTGTGCCAGCCATTGTGCTCCAG < 41bp 0.38234181256826 0.726946197917751 NA NA prediction 0.453892395835502 Functional Gain - SYT12 ENSG00000173227 CDS Human protein_coding chr11:66813328 chr11:66813327 synonymous SNV . 0 20 hm7G_associated_SNPs_24236 0 0 0 0 1 SYT12 chr11:66813348 5'GT 66813348 Upstream 22bp 22319 chr7 34182916 34182916 1 + G T LUSC 34182917 + 34182897 34182937 41 TCATTTTTGGCATATACCCGGGCCTGCCAGAGAGAGGGCAT TCATTTTTGGCATATACCCTGGCCTGCCAGAGAGAGGGCAT < 41bp 0.667738668878889 0.894683497047656 NA NA prediction 0.453889656337535 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34182917 chr7:34182916 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_24237 0 0 0 0 2 BMPER chr7:34182842 3'AG 34182842 Downstream 75bp 22320 chr7 34182916 34182916 1 + G T LUSC 34182917 + 34182897 34182937 41 TCATTTTTGGCATATACCCGGGCCTGCCAGAGAGAGGGCAT TCATTTTTGGCATATACCCTGGCCTGCCAGAGAGAGGGCAT < 41bp 0.667738668878889 0.894683497047656 NA NA prediction 0.453889656337535 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34182917 chr7:34182916 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_24237 0 0 0 0 2 BMPER chr7:34182972 5'GT 34182972 Upstream 57bp 22321 chr4 158060055 158060055 1 + G T UCEC 158060056 + 158060036 158060076 41 CTCAATTTGATATCAAAAAGGAAGATATTGAATATGGTAAC CTCAATTTGATATCAAAAATGAAGATATTGAATATGGTAAC < 41bp 0.639938023715115 0.866878477220195 NA NA prediction 0.453880907010161 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:158060056 chr4:158060055 nonsynonymous SNV 0.966 1 20 hm7G_associated_SNPs_24238 0 0 0 0 2 GLRB chr4:158059961 3'AG 158059961 Downstream 95bp 22322 chr4 158060055 158060055 1 + G T UCEC 158060056 + 158060036 158060076 41 CTCAATTTGATATCAAAAAGGAAGATATTGAATATGGTAAC CTCAATTTGATATCAAAAATGAAGATATTGAATATGGTAAC < 41bp 0.639938023715115 0.866878477220195 NA NA prediction 0.453880907010161 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:158060056 chr4:158060055 nonsynonymous SNV 0.966 1 20 hm7G_associated_SNPs_24238 0 0 0 0 2 GLRB chr4:158060101 5'GT 158060101 Upstream 47bp 22323 chr17 45015966 45015966 1 + G T UCEC 45015967 + 45015947 45015987 41 TGTTCTCTTCTGCCCCAGGGGACTCAGAAGAAGATCCTTGA TGTTCTCTTCTGCCCCAGGTGACTCAGAAGAAGATCCTTGA < 41bp 0.652958150813163 0.879898311146901 NA NA prediction 0.453880320667474 Functional Gain - GOSR2 ENSG00000108433;ENSG00000262633 CDS Human other chr17:45015967 chr17:45015966 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_24239 0 0 1 0 1 GOSR2 chr17:45015965 3'AG 45015965 Downstream 2bp 22324 chr15 41865899 41865899 1 + G T LUSC 41865900 + 41865880 41865920 41 GCGTTCGGGGTGACCATGTGGGAGATCATGACACGTGGGCA GCGTTCGGGGTGACCATGTTGGAGATCATGACACGTGGGCA < 41bp 0.672696756453035 0.899625316917206 NA NA prediction 0.453857120928344 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41865900 chr15:41865899 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24240 0 0 1 0 1 TYRO3 chr15:41865877 3'AG 41865877 Downstream 23bp 22325 chr19 45525438 45525438 1 + G A SARC 45525439 + 45525419 45525459 41 GACGGCATCTGCAGGGTGCGGCTCCGGCCTCACGTCAGCCC GACGGCATCTGCAGGGTGCAGCTCCGGCCTCACGTCAGCCC < 41bp 0.513328966718083 0.740254332958545 NA NA prediction 0.453850732480924 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45525439 chr19:45525438 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_24242 0 0 0 0 1 RELB chr19:45525468 5'GT 45525468 Upstream 31bp 22326 chr7 45077891 45077891 1 + G T LIHC 45077892 + 45077872 45077912 41 TAAACGAGTATTCCTAAAAGGTGAAAAGAGTAGAGATAAGA TAAACGAGTATTCCTAAAATGTGAAAAGAGTAGAGATAAGA < 41bp 0.394654763934726 0.726901859772083 NA NA prediction 0.453803719544167 Functional Gain - CCM2 ENSG00000136280 CDS Human protein_coding chr7:45077892 chr7:45077891 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24244 0 0 1 1 1 CCM2 chr7:45077852 3'AG 45077852 Downstream 40bp 22327 chrX 70443570 70443570 1 + G T UCEC 70443571 + 70443551 70443591 41 AGGCAGGATGAACTGGACAGGTTTGTACACCTTGCTCAGTG AGGCAGGATGAACTGGACATGTTTGTACACCTTGCTCAGTG < 41bp 0.408427499391211 0.726899062307785 NA NA prediction 0.45379812461557 Functional Gain - GJB1 ENSG00000169562 CDS Human protein_coding chrX:70443571 chrX:70443570 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_24245 0 0 1 0 1 BCYRN1 chrX:70443542 3'AG 70443542 Downstream 29bp 22328 chr22 23501399 23501399 1 + G T STAD 23501400 + 23501380 23501420 41 GACGCTGTGCACCTGGCCAGGGAGATGCAGGCCGAGTACTG GACGCTGTGCACCTGGCCATGGAGATGCAGGCCGAGTACTG < 41bp 0.671807785358101 0.898706736115976 NA NA prediction 0.45379790151575 Functional Gain - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23501400 chr22:23501399 nonsynonymous SNV 0.972 0 20 hm7G_associated_SNPs_24246 0 0 0 0 2 RAB36 chr22:23501350 3'AG 23501350 Downstream 50bp 22329 chr22 23501399 23501399 1 + G T STAD 23501400 + 23501380 23501420 41 GACGCTGTGCACCTGGCCAGGGAGATGCAGGCCGAGTACTG GACGCTGTGCACCTGGCCATGGAGATGCAGGCCGAGTACTG < 41bp 0.671807785358101 0.898706736115976 NA NA prediction 0.45379790151575 Functional Gain - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23501400 chr22:23501399 nonsynonymous SNV 0.972 0 20 hm7G_associated_SNPs_24246 0 0 0 0 2 RAB36 chr22:23501440 5'GT 23501440 Upstream 42bp 22330 chr19 853309 853309 1 + G A STAD 853310 + 853290 853330 41 GGAGCCCATAACCTCTCGCGGCGGGAGCCCACCCGGCAGGT GGAGCCCATAACCTCTCGCAGCGGGAGCCCACCCGGCAGGT < 41bp 0.520052698032343 0.746940905674283 NA NA prediction 0.453776415283879 Functional Gain - ELANE ENSG00000197561 CDS Human protein_coding chr19:853310 chr19:853309 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_24249 0 0 0 0 2 ELANE chr19:853262 3'AG 853262 Downstream 48bp 22331 chr19 853309 853309 1 + G A STAD 853310 + 853290 853330 41 GGAGCCCATAACCTCTCGCGGCGGGAGCCCACCCGGCAGGT GGAGCCCATAACCTCTCGCAGCGGGAGCCCACCCGGCAGGT < 41bp 0.520052698032343 0.746940905674283 NA NA prediction 0.453776415283879 Functional Gain - ELANE ENSG00000197561 CDS Human protein_coding chr19:853310 chr19:853309 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_24249 0 0 0 0 2 ELANE chr19:853403 5'GT 853403 Upstream 95bp 22332 chr15 79755584 79755584 1 + G T LUSC 79755585 + 79755565 79755605 41 GAGTTGGCCGAGGTGAAGCGGGGCCAACCTTCTTGGACCAT GAGTTGGCCGAGGTGAAGCTGGGCCAACCTTCTTGGACCAT < 41bp 0.388989680309024 0.72687959656378 NA NA prediction 0.453759193127559 Functional Gain - KIAA1024 ENSG00000169330 CDS Human protein_coding chr15:79755585 chr15:79755584 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_24251 0 0 0 0 1 KIAA1024 chr15:79755663 5'GT 79755663 Upstream 80bp 22333 chr2 139316692 139316692 1 + G T SKCM 139316693 + 139316673 139316713 41 GAAGATTTAGGTAATCTCTGGGAAAACACAAGATTTACAGA GAAGATTTAGGTAATCTCTTGGAAAACACAAGATTTACAGA < 41bp 0.658178835924617 0.885056232967553 NA NA prediction 0.45375479408587 Functional Gain - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139316693 chr2:139316692 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24252 0 0 1 0 1 SPOPL chr2:139316769 5'GT 139316769 Upstream 78bp 22334 chr11 830044 830044 1 + G A rs35567200 830045 + 830025 830065 41 CGAGCGCCCCGAGCTGCTGGGCTCTTTCGAGGATGTTCTGA CGAGCGCCCCGAGCTGCTGAGCTCTTTCGAGGATGTTCTGA < 41bp 0.519934139515829 0.746808671645806 NA NA prediction 0.453749064259954 Functional Gain - CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830045 chr11:830044 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_24254 0 0 1 0 2 CRACR2B chr11:829986 3'AG 829986 Downstream 59bp 22335 chr11 830044 830044 1 + G A rs35567200 830045 + 830025 830065 41 CGAGCGCCCCGAGCTGCTGGGCTCTTTCGAGGATGTTCTGA CGAGCGCCCCGAGCTGCTGAGCTCTTTCGAGGATGTTCTGA < 41bp 0.519934139515829 0.746808671645806 NA NA prediction 0.453749064259954 Functional Gain - CRACR2B ENSG00000177685 CDS Human protein_coding chr11:830045 chr11:830044 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_24254 0 0 1 0 2 CRACR2B chr11:830132 5'GT 830132 Upstream 89bp 22336 chr16 85116191 85116191 1 + G T UCEC 85116192 + 85116172 85116212 41 GGGATGCTGGAGAGGAGGAGGAGAAGAGGTGTGTGTGTCCA GGGATGCTGGAGAGGAGGATGAGAAGAGGTGTGTGTGTCCA < 41bp 0.403839404147778 0.726862149408068 NA NA prediction 0.453724298816135 Functional Gain - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85116192 chr16:85116191 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24255 0 0 0 0 2 KIAA0513 chr16:85116170 3'AG 85116170 Downstream 22bp 22337 chr16 85116191 85116191 1 + G T UCEC 85116192 + 85116172 85116212 41 GGGATGCTGGAGAGGAGGAGGAGAAGAGGTGTGTGTGTCCA GGGATGCTGGAGAGGAGGATGAGAAGAGGTGTGTGTGTCCA < 41bp 0.403839404147778 0.726862149408068 NA NA prediction 0.453724298816135 Functional Gain - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85116192 chr16:85116191 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24255 0 0 0 0 2 KIAA0513 chr16:85116199 5'GT 85116199 Upstream 9bp 22338 chr1 95322974 95322974 1 + G T LUAD 95322975 + 95322955 95322995 41 GTGGTCGTACCATTTAATTGGCCTCATCTGGACTAGTGAAT GTGGTCGTACCATTTAATTTGCCTCATCTGGACTAGTGAAT < 41bp 0.381414478868014 0.726861259754576 NA NA prediction 0.453722519509153 Functional Gain - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95322975 chr1:95322974 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24257 0 0 0 0 2 SLC44A3 chr1:95322891 3'AG 95322891 Downstream 84bp 22339 chr1 95322974 95322974 1 + G T LUAD 95322975 + 95322955 95322995 41 GTGGTCGTACCATTTAATTGGCCTCATCTGGACTAGTGAAT GTGGTCGTACCATTTAATTTGCCTCATCTGGACTAGTGAAT < 41bp 0.381414478868014 0.726861259754576 NA NA prediction 0.453722519509153 Functional Gain - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95322975 chr1:95322974 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24257 0 0 0 0 2 SLC44A3 chr1:95323056 5'GT 95323056 Upstream 83bp 22340 chr3 119459406 119459406 1 + G T LIHC 119459407 + 119459387 119459427 41 TTGATACAGATGTTTGAAGGGAAAGAAAAGCGACTGGAGTT TTGATACAGATGTTTGAAGTGAAAGAAAAGCGACTGGAGTT < 41bp 0.651519336924528 0.87837968856705 NA NA prediction 0.453720703285044 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119459407 chr3:119459406 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_24258 0 0 0 0 1 MAATS1 chr3:119459396 3'AG 119459396 Downstream 11bp 22341 chr19 2813149 2813149 1 + G T LUAD 2813150 + 2813130 2813170 41 AAGCTGCATCCTGAGACCCGGCGGTTCCGAGGATGCCAGCG AAGCTGCATCCTGAGACCCTGCGGTTCCGAGGATGCCAGCG < 41bp 0.661271850202657 0.88813197044241 NA NA prediction 0.453720240479508 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2813150 chr19:2813149 nonsynonymous SNV 0.619 4 20 hm7G_associated_SNPs_24259 0 0 1 0 1 THOP1 chr19:2813113 3'AG 2813113 Downstream 37bp 22342 chr1 210411426 210411426 1 + G A rs142929495 210411427 + 210411407 210411447 41 CGGAGGCCCAAGCCCCCCAGGGCCAGCACAAGCTCCTTTGC CGGAGGCCCAAGCCCCCCAAGGCCAGCACAAGCTCCTTTGC < 41bp 0.501197855889865 0.728055940265782 NA NA prediction 0.453716168751833 Functional Gain - SERTAD4 ENSG00000082497 CDS Human protein_coding chr1:210411427 chr1:210411426 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_24260 0 0 0 0 1 SERTAD4 chr1:210411480 5'GT 210411480 Upstream 55bp 22343 chr19 2794832 2794832 1 + G T LGG 2794833 + 2794813 2794853 41 TCCGGACAGCCAGCACAGAGGCCGACAAGAAGCTCTCTGAG TCCGGACAGCCAGCACAGATGCCGACAAGAAGCTCTCTGAG < 41bp 0.676344941425227 0.903192808766018 NA NA prediction 0.453695734681583 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2794833 chr19:2794832 nonsynonymous SNV 0.944 1 20 hm7G_associated_SNPs_24266 0 0 1 0 2 THOP1 chr19:2794762 3'AG 2794762 Downstream 71bp 22344 chr19 2794832 2794832 1 + G T LGG 2794833 + 2794813 2794853 41 TCCGGACAGCCAGCACAGAGGCCGACAAGAAGCTCTCTGAG TCCGGACAGCCAGCACAGATGCCGACAAGAAGCTCTCTGAG < 41bp 0.676344941425227 0.903192808766018 NA NA prediction 0.453695734681583 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2794833 chr19:2794832 nonsynonymous SNV 0.944 1 20 hm7G_associated_SNPs_24266 0 0 1 0 2 THOP1 chr19:2794910 5'GT 2794910 Upstream 79bp 22345 chr1 158325828 158325828 1 + G T UCEC 158325829 + 158325809 158325849 41 TGGATGTGGCGGCTGGGGAGGCAGCTGGCCTGTCCTGTCGG TGGATGTGGCGGCTGGGGATGCAGCTGGCCTGTCCTGTCGG < 41bp 0.639365440434431 0.866203589519771 NA NA prediction 0.453676298170681 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325829 chr1:158325828 nonsynonymous SNV 0.203 0 20 hm7G_associated_SNPs_24267 0 0 0 0 1 CD1E chr1:158325895 5'GT 158325895 Upstream 68bp 22346 chrX 69496569 69496569 1 + G T UCEC 69496570 + 69496550 69496590 41 TCTGTGCTGAAAACCCAGAGGAGACAGTCTCCAAGAGGTAT TCTGTGCTGAAAACCCAGATGAGACAGTCTCCAAGAGGTAT < 41bp 0.666122392997133 0.892945735073575 NA NA prediction 0.453646684152884 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69496570 chrX:69496569 nonsynonymous SNV 0.915 1 20 hm7G_associated_SNPs_24268 0 0 0 0 2 ARR3 chrX:69496519 3'AG 69496519 Downstream 51bp 22347 chrX 69496569 69496569 1 + G T UCEC 69496570 + 69496550 69496590 41 TCTGTGCTGAAAACCCAGAGGAGACAGTCTCCAAGAGGTAT TCTGTGCTGAAAACCCAGATGAGACAGTCTCCAAGAGGTAT < 41bp 0.666122392997133 0.892945735073575 NA NA prediction 0.453646684152884 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69496570 chrX:69496569 nonsynonymous SNV 0.915 1 20 hm7G_associated_SNPs_24268 0 0 0 0 2 ARR3 chrX:69496586 5'GT 69496586 Upstream 18bp 22348 chr16 89592826 89592826 1 + G T LUAD 89592827 + 89592807 89592847 41 AAGATGAGCTGAATATCGAGGCCAAGGACAGGATCCCAGTT AAGATGAGCTGAATATCGATGCCAAGGACAGGATCCCAGTT < 41bp 0.672221265757306 0.899041608563563 NA NA prediction 0.453640685612513 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89592827 chr16:89592826 nonsynonymous SNV 0.400 0 20 hm7G_associated_SNPs_24269 0 0 1 0 2 SPG7 chr16:89592737 3'AG 89592737 Downstream 90bp 22349 chr16 89592826 89592826 1 + G T LUAD 89592827 + 89592807 89592847 41 AAGATGAGCTGAATATCGAGGCCAAGGACAGGATCCCAGTT AAGATGAGCTGAATATCGATGCCAAGGACAGGATCCCAGTT < 41bp 0.672221265757306 0.899041608563563 NA NA prediction 0.453640685612513 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89592827 chr16:89592826 nonsynonymous SNV 0.400 0 20 hm7G_associated_SNPs_24269 0 0 1 0 2 SPG7 chr16:89592876 5'GT 89592876 Upstream 51bp 22350 chr1 156899209 156899209 1 + G T UCEC 156899210 + 156899190 156899230 41 AGGGCCTGGGCAAGAAAAAGGAGAAATCATGGGTAGGTGTG AGGGCCTGGGCAAGAAAAATGAGAAATCATGGGTAGGTGTG < 41bp 0.663038191352807 0.88985754349587 NA NA prediction 0.453638704286127 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156899210 chr1:156899209 nonsynonymous SNV 0.644 3 20 hm7G_associated_SNPs_24270 0 0 0 0 1 LRRC71 chr1:156899221 5'GT 156899221 Upstream 13bp 22351 chr12 98994992 98994992 1 + G T UCEC 98994993 + 98994973 98995013 41 CTCACCCTGCTGATTCTGTGGTATCTGTGTTGAATAAAGAA CTCACCCTGCTGATTCTGTTGTATCTGTGTTGAATAAAGAA < 41bp 0.392304287603128 0.726761077209993 NA NA prediction 0.453522154419986 Functional Gain - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98994993 chr12:98994992 synonymous SNV . 0 20 hm7G_associated_SNPs_24277 1 0 1 0 2 SLC25A3 chr12:98994949 3'AG 98994949 Downstream 44bp 22352 chr12 98994992 98994992 1 + G T UCEC 98994993 + 98994973 98995013 41 CTCACCCTGCTGATTCTGTGGTATCTGTGTTGAATAAAGAA CTCACCCTGCTGATTCTGTTGTATCTGTGTTGAATAAAGAA < 41bp 0.392304287603128 0.726761077209993 NA NA prediction 0.453522154419986 Functional Gain - SLC25A3 ENSG00000075415 CDS Human protein_coding chr12:98994993 chr12:98994992 synonymous SNV . 0 20 hm7G_associated_SNPs_24277 1 0 1 0 2 SLC25A3 chr12:98995059 5'GT 98995059 Upstream 68bp 22353 chr19 48519237 48519237 1 + G T LUAD 48519238 + 48519218 48519258 41 AGCTTCTTAGGCAGTCTGTGGTGCTCAGTCACCTCTGTCTT AGCTTCTTAGGCAGTCTGTTGTGCTCAGTCACCTCTGTCTT < 41bp 0.391043544169794 0.726758061354662 NA NA prediction 0.453516122709325 Functional Gain - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48519238 chr19:48519237 nonsynonymous SNV 0.520 4 20 hm7G_associated_SNPs_24278 0 0 0 0 2 ELSPBP1 chr19:48519150 3'AG 48519150 Downstream 88bp 22354 chr19 48519237 48519237 1 + G T LUAD 48519238 + 48519218 48519258 41 AGCTTCTTAGGCAGTCTGTGGTGCTCAGTCACCTCTGTCTT AGCTTCTTAGGCAGTCTGTTGTGCTCAGTCACCTCTGTCTT < 41bp 0.391043544169794 0.726758061354662 NA NA prediction 0.453516122709325 Functional Gain - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48519238 chr19:48519237 nonsynonymous SNV 0.520 4 20 hm7G_associated_SNPs_24278 0 0 0 0 2 ELSPBP1 chr19:48519296 5'GT 48519296 Upstream 60bp 22355 chr22 43820981 43820981 1 + G A rs201549160 43820982 + 43820962 43821002 41 GGGAGATGCCGGGGCGGCCGGCGGAGGTCCATGTGGCGCTC GGGAGATGCCGGGGCGGCCAGCGGAGGTCCATGTGGCGCTC < 41bp 0.516076426071027 0.742798770781568 NA NA prediction 0.453444689421082 Functional Gain - MPPED1 ENSG00000186732 CDS Human protein_coding chr22:43820982 chr22:43820981 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_24282 0 0 0 0 1 MPPED1 chr22:43820914 3'AG 43820914 Downstream 68bp 22356 chr1 111889571 111889571 1 + G T UCEC 111889572 + 111889552 111889592 41 TTTGGAACATGTCAACAGAGGAAACTTTTTCCTCACTTCCA TTTGGAACATGTCAACAGATGAAACTTTTTCCTCACTTCCA < 41bp 0.405879675112279 0.726702791648599 NA NA prediction 0.453405583297199 Functional Gain - PIFO ENSG00000173947 CDS Human protein_coding chr1:111889572 chr1:111889571 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_24284 0 0 0 0 1 PIFO chr1:111889532 3'AG 111889532 Downstream 40bp 22357 chr19 14717891 14717891 1 + G T UCEC 14717892 + 14717872 14717912 41 AAGGGGACTGGAGGTGGCTGGATGGGTCTCCTGTGACATTA AAGGGGACTGGAGGTGGCTTGATGGGTCTCCTGTGACATTA < 41bp 0.380727096439751 0.726692493245564 NA NA prediction 0.453384986491129 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14717892 chr19:14717891 synonymous SNV . 0 20 hm7G_associated_SNPs_24286 0 0 0 0 1 CLEC17A chr19:14717805 3'AG 14717805 Downstream 87bp 22358 chr19 22784777 22784777 1 + G T UCEC 22784778 + 22784758 22784798 41 AGAAGGAGGAGAAGGAGAAGGAGGAGGAGGCGTCTCGGCCC AGAAGGAGGAGAAGGAGAATGAGGAGGAGGCGTCTCGGCCC < 41bp 0.430962092699509 0.72668243872238 NA NA prediction 0.453364877444761 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22784778 chr19:22784777 . . 0 20 hm7G_associated_SNPs_24289 0 0 0 0 1 GOLGA2P9 chr19:22784840 5'GT 22784840 Upstream 64bp 22359 chr1 57349288 57349288 1 + G T LUAD 57349289 + 57349269 57349309 41 CCGGCAGCCCTTTATTGGTGGGTGTAGGTGTATCCCACTCA CCGGCAGCCCTTTATTGGTTGGTGTAGGTGTATCCCACTCA < 41bp 0.390917172131002 0.726673493709575 NA NA prediction 0.453346987419151 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57349289 chr1:57349288 synonymous SNV . 0 20 hm7G_associated_SNPs_24290 0 0 0 0 1 C8A chr1:57349354 5'GT 57349354 Upstream 67bp 22360 chr12 100796415 100796415 1 + G T LUAD 100796416 + 100796396 100796436 41 GATTTTTCACATCTTTGCCGGTTTATGCAATCATTGTGGCA GATTTTTCACATCTTTGCCTGTTTATGCAATCATTGTGGCA < 41bp 0.410504452765419 0.726666062804697 NA NA prediction 0.453332125609394 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100796416 chr12:100796415 synonymous SNV . 0 20 hm7G_associated_SNPs_24291 0 0 0 0 1 SLC17A8 chr12:100796374 3'AG 100796374 Downstream 42bp 22361 chr3 33870347 33870347 1 + G T LIHC 33870348 + 33870328 33870368 41 AGTATTTTTATTTCCAGGAGGTGTTCCCTGTCTTGGCTGCA AGTATTTTTATTTCCAGGATGTGTTCCCTGTCTTGGCTGCA < 41bp 0.402299076390969 0.726659957084898 NA NA prediction 0.453319914169796 Functional Gain - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33870348 chr3:33870347 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24292 0 0 1 0 2 PDCD6IP chr3:33870330 3'AG 33870330 Downstream 18bp 22362 chr3 33870347 33870347 1 + G T LIHC 33870348 + 33870328 33870368 41 AGTATTTTTATTTCCAGGAGGTGTTCCCTGTCTTGGCTGCA AGTATTTTTATTTCCAGGATGTGTTCCCTGTCTTGGCTGCA < 41bp 0.402299076390969 0.726659957084898 NA NA prediction 0.453319914169796 Functional Gain - PDCD6IP ENSG00000170248 CDS Human protein_coding chr3:33870348 chr3:33870347 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24292 0 0 1 0 2 PDCD6IP chr3:33870345 3'AG 33870345 Downstream 3bp 22363 chr3 140406631 140406631 1 + G T STAD 140406632 + 140406612 140406652 41 ACAGCTTTAAAGCTGACAAGGAGGCAAAGCGAAAAGAGATC ACAGCTTTAAAGCTGACAATGAGGCAAAGCGAAAAGAGATC < 41bp 0.65817543448002 0.884832826028539 NA NA prediction 0.453314783097037 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140406632 chr3:140406631 nonsynonymous SNV 0.920 4 20 hm7G_associated_SNPs_24293 0 0 0 0 1 TRIM42 chr3:140406564 3'AG 140406564 Downstream 68bp 22364 chr11 93800864 93800864 1 - C A OV 93800863 - 93800843 93800883 41 TCCACTTCCCAGGATTCTCGGCTATCATTTCTGTTGTAAGG TCCACTTCCCAGGATTCTCTGCTATCATTTCTGTTGTAAGG < 41bp 0.400781337908486 0.726644985259062 NA NA prediction 0.453289970518123 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93800863 chr11:93800864 synonymous SNV . 0 20 hm7G_associated_SNPs_24294 0 0 0 0 1 HEPHL1 chr11:93800909 3'AG 93800909 Downstream 46bp 22365 chr17 29185232 29185232 1 + G T LGG 29185233 + 29185213 29185253 41 TAAGAAATCTTTTGCTTGAGGAAATTAGGTGGTCAAATCCT TAAGAAATCTTTTGCTTGATGAAATTAGGTGGTCAAATCCT < 41bp 0.64651599615994 0.873109897315007 NA NA prediction 0.453187802310133 Functional Gain - ATAD5 ENSG00000176208 CDS Human protein_coding chr17:29185233 chr17:29185232 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24297 0 0 1 0 1 ATAD5 chr17:29185179 3'AG 29185179 Downstream 54bp 22366 chrX 1755382 1755382 1 + G T LUAD 1755383 + 1755363 1755403 41 GATCTGTACATCCTGGCCAGGGTCCTCCATGACTGGGCAGA GATCTGTACATCCTGGCCATGGTCCTCCATGACTGGGCAGA < 41bp 0.675326733344749 0.901892268149588 NA NA prediction 0.453131069609678 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1755383 chrX:1755382 nonsynonymous SNV 0.913 3 20 hm7G_associated_SNPs_24300 0 0 0 0 2 ASMT chrX:1755331 3'AG 1755331 Downstream 52bp 22367 chrX 1755382 1755382 1 + G T LUAD 1755383 + 1755363 1755403 41 GATCTGTACATCCTGGCCAGGGTCCTCCATGACTGGGCAGA GATCTGTACATCCTGGCCATGGTCCTCCATGACTGGGCAGA < 41bp 0.675326733344749 0.901892268149588 NA NA prediction 0.453131069609678 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1755383 chrX:1755382 nonsynonymous SNV 0.913 3 20 hm7G_associated_SNPs_24300 0 0 0 0 2 ASMT chrX:1755453 5'GT 1755453 Upstream 72bp 22368 chr22 20749701 20749701 1 + G T LUAD 20749702 + 20749682 20749722 41 TGGGGTCTTCCCGAAGCCAGGTCCAAGGTGAGTGGCTGTGT TGGGGTCTTCCCGAAGCCATGTCCAAGGTGAGTGGCTGTGT < 41bp 0.580787250293723 0.807328805559595 NA NA prediction 0.453083110531744 Functional Gain - ZNF74 ENSG00000185252 CDS Human protein_coding chr22:20749702 chr22:20749701 nonsynonymous SNV 0.681 1 20 hm7G_associated_SNPs_24302 0 0 1 0 2 ZNF74 chr22:20749623 3'AG 20749623 Downstream 79bp 22369 chr22 20749701 20749701 1 + G T LUAD 20749702 + 20749682 20749722 41 TGGGGTCTTCCCGAAGCCAGGTCCAAGGTGAGTGGCTGTGT TGGGGTCTTCCCGAAGCCATGTCCAAGGTGAGTGGCTGTGT < 41bp 0.580787250293723 0.807328805559595 NA NA prediction 0.453083110531744 Functional Gain - ZNF74 ENSG00000185252 CDS Human protein_coding chr22:20749702 chr22:20749701 nonsynonymous SNV 0.681 1 20 hm7G_associated_SNPs_24302 0 0 1 0 2 ZNF74 chr22:20749708 5'GT 20749708 Upstream 8bp 22370 chr3 134920351 134920351 1 + G T GBM 134920352 + 134920332 134920372 41 TCACCGTGATCCAGCTTGTGGGTATGCTCAGGGGCATCGCT TCACCGTGATCCAGCTTGTTGGTATGCTCAGGGGCATCGCT < 41bp 0.383946644866743 0.726535398387096 NA NA prediction 0.453070796774191 Functional Gain - EPHB1 ENSG00000154928 CDS Human protein_coding chr3:134920352 chr3:134920351 synonymous SNV . 0 20 hm7G_associated_SNPs_24303 0 0 0 0 1 EPHB1 chr3:134920316 3'AG 134920316 Downstream 36bp 22371 chr1 26582344 26582344 1 + G T LUAD 26582345 + 26582325 26582365 41 AATTGATTCGTTTACAGATGGAGCAAATGCAGGTAGAGGTC AATTGATTCGTTTACAGATTGAGCAAATGCAGGTAGAGGTC < 41bp 0.662187784903819 0.888717548167187 NA NA prediction 0.453059526526735 Functional Gain - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26582345 chr1:26582344 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24305 0 0 1 0 1 CEP85 chr1:26582356 5'GT 26582356 Upstream 13bp 22372 chr11 85622377 85622377 1 + G T CESC 85622378 + 85622358 85622398 41 AAAATGCTATTCATGAACTGGAAGCAGAAAATTTGGTGCTT AAAATGCTATTCATGAACTTGAAGCAGAAAATTTGGTGCTT < 41bp 0.652732210895447 0.879259439555592 NA NA prediction 0.453054457320292 Functional Gain - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85622378 chr11:85622377 synonymous SNV . 0 20 hm7G_associated_SNPs_24306 0 0 0 0 3 CCDC83 chr11:85622319 3'AG 85622319 Downstream 59bp 22373 chr11 85622377 85622377 1 + G T CESC 85622378 + 85622358 85622398 41 AAAATGCTATTCATGAACTGGAAGCAGAAAATTTGGTGCTT AAAATGCTATTCATGAACTTGAAGCAGAAAATTTGGTGCTT < 41bp 0.652732210895447 0.879259439555592 NA NA prediction 0.453054457320292 Functional Gain - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85622378 chr11:85622377 synonymous SNV . 0 20 hm7G_associated_SNPs_24306 0 0 0 0 3 CCDC83 chr11:85622324 3'AG 85622324 Downstream 54bp 22374 chr11 85622377 85622377 1 + G T CESC 85622378 + 85622358 85622398 41 AAAATGCTATTCATGAACTGGAAGCAGAAAATTTGGTGCTT AAAATGCTATTCATGAACTTGAAGCAGAAAATTTGGTGCTT < 41bp 0.652732210895447 0.879259439555592 NA NA prediction 0.453054457320292 Functional Gain - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85622378 chr11:85622377 synonymous SNV . 0 20 hm7G_associated_SNPs_24306 0 0 0 0 3 CCDC83 chr11:85622445 5'GT 85622445 Upstream 69bp 22375 chr20 62839774 62839774 1 + G T LUAD 62839775 + 62839755 62839795 41 TGCCGAGCAGAGCCAGCTGGGCCTGGGAGAGCCAGGGAAGG TGCCGAGCAGAGCCAGCTGTGCCTGGGAGAGCCAGGGAAGG < 41bp 0.373064942713639 0.726506365976617 NA NA prediction 0.453012731953233 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62839775 chr20:62839774 nonsynonymous SNV 0.276 1 20 hm7G_associated_SNPs_24309 0 0 0 0 1 MYT1 chr20:62839840 5'GT 62839840 Upstream 67bp 22376 chr2 24205808 24205808 1 + G T LUAD 24205809 + 24205789 24205829 41 GAATTTTTGATAAAGAAGAGGTGGACGTTAAAGTTGAAGAC GAATTTTTGATAAAGAAGATGTGGACGTTAAAGTTGAAGAC < 41bp 0.649423076835037 0.875927273267593 NA NA prediction 0.453008392865113 Functional Gain - UBXN2A ENSG00000173960 CDS Human protein_coding chr2:24205809 chr2:24205808 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24310 0 0 1 0 2 UBXN2A chr2:24205766 3'AG 24205766 Downstream 43bp 22377 chr2 24205808 24205808 1 + G T LUAD 24205809 + 24205789 24205829 41 GAATTTTTGATAAAGAAGAGGTGGACGTTAAAGTTGAAGAC GAATTTTTGATAAAGAAGATGTGGACGTTAAAGTTGAAGAC < 41bp 0.649423076835037 0.875927273267593 NA NA prediction 0.453008392865113 Functional Gain - UBXN2A ENSG00000173960 CDS Human protein_coding chr2:24205809 chr2:24205808 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24310 0 0 1 0 2 UBXN2A chr2:24205903 5'GT 24205903 Upstream 96bp 22378 chr8 6301970 6301970 1 + G T THYM 6301971 + 6301951 6301991 41 TGATCTTTGTGGAAACTCAGGATGTGGAAATCAGGAAAGGA TGATCTTTGTGGAAACTCATGATGTGGAAATCAGGAAAGGA < 41bp 0.418105745927598 0.726489631313254 NA NA prediction 0.452979262626508 Functional Gain - MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6301971 chr8:6301970 stopgain 0.566 0 20 hm7G_associated_SNPs_24312 0 0 1 0 1 MCPH1 chr8:6301914 3'AG 6301914 Downstream 57bp 22379 chr6 34498326 34498326 1 + G T LUSC 34498327 + 34498307 34498347 41 CGCTGACCAATGCCACTGGGGCGGTAGAGTCCACATCCCAG CGCTGACCAATGCCACTGGTGCGGTAGAGTCCACATCCCAG < 41bp 0.377832278424155 0.726483354321371 NA NA prediction 0.452966708642743 Functional Gain - PACSIN1 ENSG00000124507 CDS Human protein_coding chr6:34498327 chr6:34498326 synonymous SNV . 0 20 hm7G_associated_SNPs_24313 0 0 0 0 2 PACSIN1 chr6:34498237 3'AG 34498237 Downstream 90bp 22380 chr6 34498326 34498326 1 + G T LUSC 34498327 + 34498307 34498347 41 CGCTGACCAATGCCACTGGGGCGGTAGAGTCCACATCCCAG CGCTGACCAATGCCACTGGTGCGGTAGAGTCCACATCCCAG < 41bp 0.377832278424155 0.726483354321371 NA NA prediction 0.452966708642743 Functional Gain - PACSIN1 ENSG00000124507 CDS Human protein_coding chr6:34498327 chr6:34498326 synonymous SNV . 0 20 hm7G_associated_SNPs_24313 0 0 0 0 2 PACSIN1 chr6:34498364 5'GT 34498364 Upstream 39bp 22381 chr2 155158050 155158050 1 + G T LUAD 155158051 + 155158031 155158071 41 ACAAGAACAACAGGAGACTGGCAGAAGTTTGGATGGATGAA ACAAGAACAACAGGAGACTTGCAGAAGTTTGGATGGATGAA < 41bp 0.651677737573405 0.878158338433775 NA NA prediction 0.45296120172074 Functional Gain - GALNT13 ENSG00000144278 CDS Human protein_coding chr2:155158051 chr2:155158050 synonymous SNV . 0 20 hm7G_associated_SNPs_24316 0 0 1 0 1 GALNT13 chr2:155158102 5'GT 155158102 Upstream 53bp 22382 chr2 208440013 208440013 1 + G T UCEC 208440014 + 208439994 208440034 41 AGTTGCCATTACCCAGGGAGGAGCAATACAGCTGGCTAACA AGTTGCCATTACCCAGGGATGAGCAATACAGCTGGCTAACA < 41bp 0.406686721037695 0.726474935588648 NA NA prediction 0.452949871177296 Functional Gain - CREB1 ENSG00000118260 CDS Human protein_coding chr2:208440014 chr2:208440013 stopgain 1.000 1 20 hm7G_associated_SNPs_24319 0 0 1 1 1 CREB1 chr2:208439996 3'AG 208439996 Downstream 18bp 22383 chr19 6467009 6467009 1 + G T UCEC 6467010 + 6466990 6467030 41 CTCAGGACTCCAAGGAGACGGTGCAGGGCTGCCTGCCCATC CTCAGGACTCCAAGGAGACTGTGCAGGGCTGCCTGCCCATC < 41bp 0.64145999513337 0.867933171376252 NA NA prediction 0.452946352485764 Functional Gain - CRB3 ENSG00000130545 CDS Human protein_coding chr19:6467010 chr19:6467009 synonymous SNV . 0 20 hm7G_associated_SNPs_24320 0 0 0 0 1 CRB3 chr19:6466962 3'AG 6466962 Downstream 48bp 22384 chrX 153416191 153416191 1 + G T LUSC 153416192 + 153416172 153416212 41 TACCACCTCACCAGTGTCTGGATGATCTTTGTGGTCACTGC TACCACCTCACCAGTGTCTTGATGATCTTTGTGGTCACTGC < 41bp 0.669648987333517 0.896094050803236 NA NA prediction 0.452890126939437 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153416192 chrX:153416191 nonsynonymous SNV 0.976 2 20 hm7G_associated_SNPs_24324 0 0 0 0 1 OPN1LW chrX:153416128 3'AG 153416128 Downstream 64bp 22385 chrX 52844164 52844164 1 + G T UCEC 52844165 + 52844145 52844185 41 CTGTCTCAGTCAAAGACTGGGGATGAATGCGGAGATAGTCC CTGTCTCAGTCAAAGACTGTGGATGAATGCGGAGATAGTCC < 41bp 0.659913154481172 0.886350667276836 NA NA prediction 0.452875025591329 Functional Gain - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844165 chrX:52844164 nonsynonymous SNV 0.024 3 20 hm7G_associated_SNPs_24327 0 0 0 0 2 XAGE5 chrX:52844116 3'AG 52844116 Downstream 49bp 22386 chrX 52844164 52844164 1 + G T UCEC 52844165 + 52844145 52844185 41 CTGTCTCAGTCAAAGACTGGGGATGAATGCGGAGATAGTCC CTGTCTCAGTCAAAGACTGTGGATGAATGCGGAGATAGTCC < 41bp 0.659913154481172 0.886350667276836 NA NA prediction 0.452875025591329 Functional Gain - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844165 chrX:52844164 nonsynonymous SNV 0.024 3 20 hm7G_associated_SNPs_24327 0 0 0 0 2 XAGE5 chrX:52844241 5'GT 52844241 Upstream 78bp 22387 chr11 93487189 93487189 1 + G T THCA 93487190 + 93487170 93487210 41 AGGTCCATTTCAGACTCTCGGGTTCAATTCTGAGGTCAGCA AGGTCCATTTCAGACTCTCTGGTTCAATTCTGAGGTCAGCA < 41bp 0.662252709796524 0.888683383471357 NA NA prediction 0.452861347349667 Functional Gain - C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93487190 chr11:93487189 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_24329 0 0 1 0 2 C11orf54 chr11:93487102 3'AG 93487102 Downstream 88bp 22388 chr11 93487189 93487189 1 + G T THCA 93487190 + 93487170 93487210 41 AGGTCCATTTCAGACTCTCGGGTTCAATTCTGAGGTCAGCA AGGTCCATTTCAGACTCTCTGGTTCAATTCTGAGGTCAGCA < 41bp 0.662252709796524 0.888683383471357 NA NA prediction 0.452861347349667 Functional Gain - C11orf54 ENSG00000182919 CDS Human protein_coding chr11:93487190 chr11:93487189 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_24329 0 0 1 0 2 C11orf54 chr11:93487203 5'GT 93487203 Upstream 15bp 22389 chr7 123267195 123267195 1 + G T LUAD 123267196 + 123267176 123267216 41 TTGCTTTGGCGGATGATGGGGCGTCGGTGCTGTTTGAGGCA TTGCTTTGGCGGATGATGGTGCGTCGGTGCTGTTTGAGGCA < 41bp 0.66868693757604 0.895091200089367 NA NA prediction 0.452808525026654 Functional Gain - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123267196 chr7:123267195 synonymous SNV . 0 20 hm7G_associated_SNPs_24332 0 0 0 0 1 ASB15 chr7:123267164 3'AG 123267164 Downstream 32bp 22390 chr9 135939845 135939845 1 + G T LUSC 135939846 + 135939826 135939866 41 AGGCGTCAATAAGAAGCTCGGCCTCCTGGGTGACTCTGTGG AGGCGTCAATAAGAAGCTCTGCCTCCTGGGTGACTCTGTGG < 41bp 0.677091766533965 0.90349355723439 NA NA prediction 0.452803581400851 Functional Gain - CEL ENSG00000170835 CDS Human protein_coding chr9:135939846 chr9:135939845 nonsynonymous SNV 0.502 4 20 hm7G_associated_SNPs_24333 0 0 0 0 2 CEL chr9:135939791 3'AG 135939791 Downstream 55bp 22391 chr9 135939845 135939845 1 + G T LUSC 135939846 + 135939826 135939866 41 AGGCGTCAATAAGAAGCTCGGCCTCCTGGGTGACTCTGTGG AGGCGTCAATAAGAAGCTCTGCCTCCTGGGTGACTCTGTGG < 41bp 0.677091766533965 0.90349355723439 NA NA prediction 0.452803581400851 Functional Gain - CEL ENSG00000170835 CDS Human protein_coding chr9:135939846 chr9:135939845 nonsynonymous SNV 0.502 4 20 hm7G_associated_SNPs_24333 0 0 0 0 2 CEL chr9:135939941 5'GT 135939941 Upstream 97bp 22392 chr12 100811927 100811927 1 + G T LUSC 100811928 + 100811908 100811948 41 ATTGTCGGTGCAATGACCAGGCACAAGGTAAAGGTCTCCTT ATTGTCGGTGCAATGACCATGCACAAGGTAAAGGTCTCCTT < 41bp 0.659051304867164 0.885451037471186 NA NA prediction 0.452799465208043 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100811928 chr12:100811927 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_24334 0 0 0 0 1 SLC17A8 chr12:100811934 5'GT 100811934 Upstream 8bp 22393 chr11 47311714 47311714 1 + G T LUAD 47311715 + 47311695 47311735 41 TGCAGGAGATCAGTCGGAAGGTGTACAAGGGAATGTTAGAC TGCAGGAGATCAGTCGGAATGTGTACAAGGGAATGTTAGAC < 41bp 0.395251100379715 0.726397464086406 NA NA prediction 0.452794928172812 Functional Gain - MADD ENSG00000110514 CDS Human protein_coding chr11:47311715 chr11:47311714 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_24335 0 0 1 0 1 MADD chr11:47311700 3'AG 47311700 Downstream 15bp 22394 chr11 64938907 64938907 1 + G T UCEC 64938908 + 64938888 64938928 41 GGGCTGCAGCCGGCAAGGTGGGGGCAATGGGTTCCTCCGTT GGGCTGCAGCCGGCAAGGTTGGGGCAATGGGTTCCTCCGTT < 41bp 0.382209142215363 0.726391862954638 NA NA prediction 0.452783725909276 Functional Gain - SPDYC ENSG00000204710 CDS Human protein_coding chr11:64938908 chr11:64938907 nonsynonymous SNV 0.115 0 20 hm7G_associated_SNPs_24336 0 0 1 0 1 SPDYC chr11:64938970 5'GT 64938970 Upstream 64bp 22395 chr16 30516736 30516736 1 + G T LUSC 30516737 + 30516717 30516757 41 TTGAGAAGAACTGTGGGGAGGACAAGAAGTGTGAGGCAAAC TTGAGAAGAACTGTGGGGATGACAAGAAGTGTGAGGCAAAC < 41bp 0.669544991749873 0.895910813609659 NA NA prediction 0.452731643719573 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30516737 chr16:30516736 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_24339 0 0 0 0 2 ITGAL chr16:30516710 3'AG 30516710 Downstream 27bp 22396 chr16 30516736 30516736 1 + G T LUSC 30516737 + 30516717 30516757 41 TTGAGAAGAACTGTGGGGAGGACAAGAAGTGTGAGGCAAAC TTGAGAAGAACTGTGGGGATGACAAGAAGTGTGAGGCAAAC < 41bp 0.669544991749873 0.895910813609659 NA NA prediction 0.452731643719573 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30516737 chr16:30516736 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_24339 0 0 0 0 2 ITGAL chr16:30516783 5'GT 30516783 Upstream 48bp 22397 chr22 41726100 41726100 1 + G T UCEC 41726101 + 41726081 41726121 41 GTTCGCAAGGCGTATAAGAGGCCCCAGGTAGGTGGGTTCGG GTTCGCAAGGCGTATAAGATGCCCCAGGTAGGTGGGTTCGG < 41bp 0.380366585795728 0.726361414285034 NA NA prediction 0.452722828570067 Functional Gain - ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41726101 chr22:41726100 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24340 0 0 0 0 2 ZC3H7B chr22:41726027 3'AG 41726027 Downstream 74bp 22398 chr22 41726100 41726100 1 + G T UCEC 41726101 + 41726081 41726121 41 GTTCGCAAGGCGTATAAGAGGCCCCAGGTAGGTGGGTTCGG GTTCGCAAGGCGTATAAGATGCCCCAGGTAGGTGGGTTCGG < 41bp 0.380366585795728 0.726361414285034 NA NA prediction 0.452722828570067 Functional Gain - ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41726101 chr22:41726100 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24340 0 0 0 0 2 ZC3H7B chr22:41726107 5'GT 41726107 Upstream 8bp 22399 chrX 115586189 115586189 1 + G T UCEC 115586190 + 115586170 115586210 41 GACCACTTCTGTGCTGGATGGGGCATTTTAATTGCAGCTAT GACCACTTCTGTGCTGGATTGGGCATTTTAATTGCAGCTAT < 41bp 0.40438429088038 0.726354107552752 NA NA prediction 0.452708215105505 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115586190 chrX:115586189 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24341 0 0 1 0 2 SLC6A14 chrX:115586143 3'AG 115586143 Downstream 47bp 22400 chrX 115586189 115586189 1 + G T UCEC 115586190 + 115586170 115586210 41 GACCACTTCTGTGCTGGATGGGGCATTTTAATTGCAGCTAT GACCACTTCTGTGCTGGATTGGGCATTTTAATTGCAGCTAT < 41bp 0.40438429088038 0.726354107552752 NA NA prediction 0.452708215105505 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115586190 chrX:115586189 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24341 0 0 1 0 2 SLC6A14 chrX:115586242 5'GT 115586242 Upstream 54bp 22401 chr19 4408938 4408938 1 + G T THCA 4408939 + 4408919 4408959 41 CCTGAATCTTGTCCCAAAGGGGAAAGCCGATGACATGTCAG CCTGAATCTTGTCCCAAAGTGGAAAGCCGATGACATGTCAG < 41bp 0.379979368027276 0.726344152128142 NA NA prediction 0.452688304256283 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4408939 chr19:4408938 nonsynonymous SNV 0.935 1 20 hm7G_associated_SNPs_24342 0 0 1 0 1 CHAF1A chr19:4408900 3'AG 4408900 Downstream 39bp 22402 chr15 27185175 27185175 1 + G T LUAD 27185176 + 27185156 27185196 41 TGACCGTGATCTTATCACAGGTGTCCTTTTGGCTGAACCGG TGACCGTGATCTTATCACATGTGTCCTTTTGGCTGAACCGG < 41bp 0.398213229829751 0.726342905315502 NA NA prediction 0.452685810631003 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27185176 chr15:27185175 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_24344 0 0 0 0 1 GABRA5 chr15:27185224 5'GT 27185224 Upstream 50bp 22403 chr14 104508420 104508420 1 + G T LUAD 104508421 + 104508401 104508441 41 TACAGGTTAATATTCTCAGGGCTGCTATTAACAAGCTAGTC TACAGGTTAATATTCTCAGTGCTGCTATTAACAAGCTAGTC < 41bp 0.402138647452781 0.726341130774828 NA NA prediction 0.452682261549655 Functional Gain - TDRD9 ENSG00000156414 CDS Human protein_coding chr14:104508421 chr14:104508420 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_24345 0 0 0 0 1 TDRD9 chr14:104508406 3'AG 104508406 Downstream 15bp 22404 chr3 1339583 1339583 1 + G T GBM 1339584 + 1339564 1339604 41 ATTTAACAGGTGTGATGGGGGAATATGAACCAAAGATTGAA ATTTAACAGGTGTGATGGGTGAATATGAACCAAAGATTGAA < 41bp 0.414560440876192 0.726328170750063 NA NA prediction 0.452656341500127 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1339584 chr3:1339583 synonymous SNV . 0 20 hm7G_associated_SNPs_24348 0 0 0 0 2 CNTN6 chr3:1339573 3'AG 1339573 Downstream 11bp 22405 chr3 1339583 1339583 1 + G T GBM 1339584 + 1339564 1339604 41 ATTTAACAGGTGTGATGGGGGAATATGAACCAAAGATTGAA ATTTAACAGGTGTGATGGGTGAATATGAACCAAAGATTGAA < 41bp 0.414560440876192 0.726328170750063 NA NA prediction 0.452656341500127 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1339584 chr3:1339583 synonymous SNV . 0 20 hm7G_associated_SNPs_24348 0 0 0 0 2 CNTN6 chr3:1339675 5'GT 1339675 Upstream 93bp 22406 chr8 95801976 95801976 1 + G T SARC 95801977 + 95801957 95801997 41 TTTATATCTTTTAATAGATGGTTTGTGAAGAAGGTGACAAG TTTATATCTTTTAATAGATTGTTTGTGAAGAAGGTGACAAG < 41bp 0.61369870298447 0.840010927381012 NA NA prediction 0.452624448793085 Functional Gain - DPY19L4 ENSG00000156162 CDS Human protein_coding chr8:95801977 chr8:95801976 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_24349 0 0 1 0 1 DPY19L4 chr8:95801974 3'AG 95801974 Downstream 3bp 22407 chr2 233405389 233405389 1 + G T COAD 233405390 + 233405370 233405410 41 TGAGGGTGCCGTCCACCATGGTGTGGCGGCCGGATATCGTG TGAGGGTGCCGTCCACCATTGTGTGGCGGCCGGATATCGTG < 41bp 0.377321486062441 0.72628055647722 NA NA prediction 0.452561112954439 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405390 chr2:233405389 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_24350 0 0 0 0 2 CHRNG chr2:233405312 3'AG 233405312 Downstream 78bp 22408 chr2 233405389 233405389 1 + G T COAD 233405390 + 233405370 233405410 41 TGAGGGTGCCGTCCACCATGGTGTGGCGGCCGGATATCGTG TGAGGGTGCCGTCCACCATTGTGTGGCGGCCGGATATCGTG < 41bp 0.377321486062441 0.72628055647722 NA NA prediction 0.452561112954439 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405390 chr2:233405389 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_24350 0 0 0 0 2 CHRNG chr2:233405421 5'GT 233405421 Upstream 33bp 22409 chr5 150405042 150405042 1 + G T GBM 150405043 + 150405023 150405063 41 CAGCTACTGAGGCCTGACGGGCCAGTACATTGGTAAGAGCC CAGCTACTGAGGCCTGACGTGCCAGTACATTGGTAAGAGCC < 41bp 0.668573335174616 0.894845438935816 NA NA prediction 0.4525442075224 Functional Gain - GPX3 ENSG00000211445 CDS Human protein_coding chr5:150405043 chr5:150405042 unknown 0.972 0 20 hm7G_associated_SNPs_24351 0 0 1 2 1 GPX3 chr5:150405054 5'GT 150405054 Upstream 13bp 22410 chr15 75091004 75091004 1 + G A LUAD 75091005 + 75090985 75091025 41 TGCCAAGTACAACTTCCACGGCACTGCCGAGCAGGACCTGC TGCCAAGTACAACTTCCACAGCACTGCCGAGCAGGACCTGC < 41bp 0.512012174223456 0.738282887630475 NA NA prediction 0.452541426814037 Functional Gain - CSK ENSG00000103653 CDS Human protein_coding chr15:75091005 chr15:75091004 nonsynonymous SNV 0.945 2 20 hm7G_associated_SNPs_24352 0 0 1 0 2 CSK chr15:75090956 3'AG 75090956 Downstream 49bp 22411 chr15 75091004 75091004 1 + G A LUAD 75091005 + 75090985 75091025 41 TGCCAAGTACAACTTCCACGGCACTGCCGAGCAGGACCTGC TGCCAAGTACAACTTCCACAGCACTGCCGAGCAGGACCTGC < 41bp 0.512012174223456 0.738282887630475 NA NA prediction 0.452541426814037 Functional Gain - CSK ENSG00000103653 CDS Human protein_coding chr15:75091005 chr15:75091004 nonsynonymous SNV 0.945 2 20 hm7G_associated_SNPs_24352 0 0 1 0 2 CSK chr15:75091069 5'GT 75091069 Upstream 66bp 22412 chr9 130868649 130868649 1 + G T LGG 130868650 + 130868630 130868670 41 AGGTCCTGAAGACCCGGATGGCGCTGCGGAAGACAGGCCAG AGGTCCTGAAGACCCGGATTGCGCTGCGGAAGACAGGCCAG < 41bp 0.681390089911246 0.907660573083974 NA NA prediction 0.452540966345456 Functional Gain - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130868650 chr9:130868649 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_24353 0 0 1 0 1 SLC25A25 chr9:130868632 3'AG 130868632 Downstream 18bp 22413 chr22 18064154 18064154 1 + G T LUAD 18064155 + 18064135 18064175 41 TGATGAAGACGGCTCGGGCGGAGGGCTTCTTCGGCATGTAC TGATGAAGACGGCTCGGGCTGAGGGCTTCTTCGGCATGTAC < 41bp 0.376026539587498 0.726244495418661 NA NA prediction 0.452488990837322 Functional Gain - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064155 chr22:18064154 synonymous SNV . 0 20 hm7G_associated_SNPs_24356 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064124 3'AG 18064124 Downstream 31bp 22414 chr22 18064154 18064154 1 + G T LUAD 18064155 + 18064135 18064175 41 TGATGAAGACGGCTCGGGCGGAGGGCTTCTTCGGCATGTAC TGATGAAGACGGCTCGGGCTGAGGGCTTCTTCGGCATGTAC < 41bp 0.376026539587498 0.726244495418661 NA NA prediction 0.452488990837322 Functional Gain - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064155 chr22:18064154 synonymous SNV . 0 20 hm7G_associated_SNPs_24356 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064179 5'GT 18064179 Upstream 26bp 22415 chr18 39584376 39584376 1 + G T BLCA 39584377 + 39584357 39584397 41 TACCTCAAGAGGCCAAACAGGCCTTGGAACTTCTGGGAAAA TACCTCAAGAGGCCAAACATGCCTTGGAACTTCTGGGAAAA < 41bp 0.410291440846276 0.726240528749567 NA NA prediction 0.452481057499134 Functional Gain - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39584377 chr18:39584376 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_24357 0 0 1 0 1 PIK3C3 chr18:39584320 3'AG 39584320 Downstream 57bp 22416 chr8 20067030 20067030 1 + G T LUAD 20067031 + 20067011 20067051 41 TGGAAGTTAGTGGTTCCAAGGCAGTAGTTCAGGTAAGTTTC TGGAAGTTAGTGGTTCCAATGCAGTAGTTCAGGTAAGTTTC < 41bp 0.670637408319551 0.896877517477817 NA NA prediction 0.452480218316532 Functional Gain - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20067031 chr8:20067030 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24358 0 0 1 0 2 ATP6V1B2 chr8:20066944 3'AG 20066944 Downstream 87bp 22417 chr8 20067030 20067030 1 + G T LUAD 20067031 + 20067011 20067051 41 TGGAAGTTAGTGGTTCCAAGGCAGTAGTTCAGGTAAGTTTC TGGAAGTTAGTGGTTCCAATGCAGTAGTTCAGGTAAGTTTC < 41bp 0.670637408319551 0.896877517477817 NA NA prediction 0.452480218316532 Functional Gain - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20067031 chr8:20067030 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24358 0 0 1 0 2 ATP6V1B2 chr8:20067042 5'GT 20067042 Upstream 13bp 22418 chr10 105330709 105330709 1 + G A UCEC 105330710 + 105330690 105330730 41 TCCGGCAGTGCTGCCCAGCGGGGGGCTCCCAGCCACGCCGC TCCGGCAGTGCTGCCCAGCAGGGGGCTCCCAGCCACGCCGC < 41bp 0.493094626877592 0.726236451653218 NA NA prediction 0.452472903306437 Functional Gain - NEURL1 ENSG00000107954 CDS Human protein_coding chr10:105330710 chr10:105330709 nonsynonymous SNV 0.337 4 20 hm7G_associated_SNPs_24359 0 0 0 0 1 NEURL1 chr10:105330629 3'AG 105330629 Downstream 81bp 22419 chrX 49137881 49137881 1 + G T GBM 49137882 + 49137862 49137902 41 CCTGCAGGCCTGCCGAGGAGGAACTGAAGACGAAGAACATG CCTGCAGGCCTGCCGAGGATGAACTGAAGACGAAGAACATG < 41bp 0.674207472169903 0.900440697522887 NA NA prediction 0.452466450705969 Functional Gain - PPP1R3F ENSG00000049769 CDS Human protein_coding chrX:49137882 chrX:49137881 nonsynonymous SNV 0.047 2 20 hm7G_associated_SNPs_24360 0 0 1 0 2 PPP1R3F chrX:49137869 3'AG 49137869 Downstream 13bp 22420 chrX 49137881 49137881 1 + G T GBM 49137882 + 49137862 49137902 41 CCTGCAGGCCTGCCGAGGAGGAACTGAAGACGAAGAACATG CCTGCAGGCCTGCCGAGGATGAACTGAAGACGAAGAACATG < 41bp 0.674207472169903 0.900440697522887 NA NA prediction 0.452466450705969 Functional Gain - PPP1R3F ENSG00000049769 CDS Human protein_coding chrX:49137882 chrX:49137881 nonsynonymous SNV 0.047 2 20 hm7G_associated_SNPs_24360 0 0 1 0 2 PPP1R3F chrX:49137924 5'GT 49137924 Upstream 44bp 22421 chr1 26136290 26136290 1 + G T LIHC 26136291 + 26136271 26136311 41 ACCCACGTCCGCGACTTCCGGCTCTTCGTGCCCAACCACAG ACCCACGTCCGCGACTTCCTGCTCTTCGTGCCCAACCACAG < 41bp 0.676413170579222 0.902634867062788 NA NA prediction 0.452443392967133 Functional Gain - SELENON ENSG00000162430 CDS Human protein_coding chr1:26136291 chr1:26136290 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_24363 0 0 1 0 1 SELENON chr1:26136311 5'GT 26136311 Upstream 22bp 22422 chr1 84876675 84876675 1 + G T UCEC 84876676 + 84876656 84876696 41 TCAAGTACAACCAGTATGAGGCAATAGGTAAAACTAAAGTA TCAAGTACAACCAGTATGATGCAATAGGTAAAACTAAAGTA < 41bp 0.658171153219607 0.884390545767049 NA NA prediction 0.452438785094883 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876676 chr1:84876675 nonsynonymous SNV 0.962 0 20 hm7G_associated_SNPs_24364 0 0 0 0 2 DNASE2B chr1:84876682 5'GT 84876682 Upstream 8bp 22423 chr1 84876675 84876675 1 + G T UCEC 84876676 + 84876656 84876696 41 TCAAGTACAACCAGTATGAGGCAATAGGTAAAACTAAAGTA TCAAGTACAACCAGTATGATGCAATAGGTAAAACTAAAGTA < 41bp 0.658171153219607 0.884390545767049 NA NA prediction 0.452438785094883 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84876676 chr1:84876675 nonsynonymous SNV 0.962 0 20 hm7G_associated_SNPs_24364 0 0 0 0 2 DNASE2B chr1:84876693 5'GT 84876693 Upstream 19bp 22424 chr18 61465858 61465858 1 + G T LUAD 61465859 + 61465839 61465879 41 CAAAATCAAGAACGTGATTGGTGAAGGTGGCATAAGCTCAT CAAAATCAAGAACGTGATTTGTGAAGGTGGCATAAGCTCAT < 41bp 0.414874101956963 0.72620913552134 NA NA prediction 0.45241827104268 Functional Gain - SERPINB7 ENSG00000166396 CDS Human protein_coding chr18:61465859 chr18:61465858 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_24365 0 0 0 0 1 SERPINB7 chr18:61465838 3'AG 61465838 Downstream 21bp 22425 chr11 60640871 60640871 1 + G T UCEC 60640872 + 60640852 60640892 41 GACCTTCAGCTCGTACTATGGGGAGGATGACTATCCCATCG GACCTTCAGCTCGTACTATTGGGAGGATGACTATCCCATCG < 41bp 0.389868097370728 0.726207445772515 NA NA prediction 0.452414891545029 Functional Gain - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60640872 chr11:60640871 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_24366 0 0 0 0 1 ZP1 chr11:60640848 3'AG 60640848 Downstream 24bp 22426 chr4 44683190 44683190 1 + G T COAD 44683191 + 44683171 44683211 41 GGTCACTTTCTGCTTGCCAGGGTGTTTTACTTGTGGTTGAT GGTCACTTTCTGCTTGCCATGGTGTTTTACTTGTGGTTGAT < 41bp 0.386718562193769 0.726152612377024 NA NA prediction 0.452305224754048 Functional Gain - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44683191 chr4:44683190 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_24368 0 0 1 4 2 GUF1 chr4:44683140 3'AG 44683140 Downstream 51bp 22427 chr4 44683190 44683190 1 + G T COAD 44683191 + 44683171 44683211 41 GGTCACTTTCTGCTTGCCAGGGTGTTTTACTTGTGGTTGAT GGTCACTTTCTGCTTGCCATGGTGTTTTACTTGTGGTTGAT < 41bp 0.386718562193769 0.726152612377024 NA NA prediction 0.452305224754048 Functional Gain - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44683191 chr4:44683190 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_24368 0 0 1 4 2 GUF1 chr4:44683220 5'GT 44683220 Upstream 31bp 22428 chrX 49597193 49597193 1 + G T HNSC 49597194 + 49597174 49597214 41 TCGGAGTGAGCGTGGAGATGGCTCTGATGTAAAAGAGAAGA TCGGAGTGAGCGTGGAGATTGCTCTGATGTAAAAGAGAAGA < 41bp 0.660326367013066 0.886453545548665 NA NA prediction 0.452254357071198 Functional Gain - PAGE4 ENSG00000101951 CDS Human protein_coding chrX:49597194 chrX:49597193 nonsynonymous SNV 0.016 1 20 hm7G_associated_SNPs_24369 0 0 0 0 2 PAGE4 chrX:49597128 3'AG 49597128 Downstream 66bp 22429 chrX 49597193 49597193 1 + G T HNSC 49597194 + 49597174 49597214 41 TCGGAGTGAGCGTGGAGATGGCTCTGATGTAAAAGAGAAGA TCGGAGTGAGCGTGGAGATTGCTCTGATGTAAAAGAGAAGA < 41bp 0.660326367013066 0.886453545548665 NA NA prediction 0.452254357071198 Functional Gain - PAGE4 ENSG00000101951 CDS Human protein_coding chrX:49597194 chrX:49597193 nonsynonymous SNV 0.016 1 20 hm7G_associated_SNPs_24369 0 0 0 0 2 PAGE4 chrX:49597253 5'GT 49597253 Upstream 61bp 22430 chrX 2641360 2641360 1 + G T GBM 2641361 + 2641341 2641381 41 TTTTTGTCTTGCAGGAAAAGGAGGCAGTGATGGTGGAGGCA TTTTTGTCTTGCAGGAAAATGAGGCAGTGATGGTGGAGGCA < 41bp 0.664358946348333 0.890480419668331 NA NA prediction 0.452242946639996 Functional Gain - CD99 ENSG00000002586 CDS Human protein_coding chrX:2641361 chrX:2641360 stopgain 0.002 0 20 hm7G_associated_SNPs_24370 0 0 1 0 1 CD99 chrX:2641355 3'AG 2641355 Downstream 6bp 22431 chr9 140108704 140108704 1 + G A rs147626135 140108705 + 140108685 140108725 41 TCCAAGAGGCACCCAGCACGGGCTCTGAGGGGCAGCGGGTA TCCAAGAGGCACCCAGCACAGGCTCTGAGGGGCAGCGGGTA < 41bp 0.521284515913278 0.747404801415595 NA NA prediction 0.452240571004633 Functional Gain - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140108705 chr9:140108704 synonymous SNV . 0 20 hm7G_associated_SNPs_24371 0 0 1 0 1 NDOR1 chr9:140108656 3'AG 140108656 Downstream 49bp 22432 chr14 59965536 59965536 1 + G T LUAD 59965537 + 59965517 59965557 41 GAAGATTGCATGTGGGTTAGGGAAATCTGATCGATTTAAAA GAAGATTGCATGTGGGTTATGGAAATCTGATCGATTTAAAA < 41bp 0.656214957706817 0.882333244748173 NA NA prediction 0.452236574082711 Functional Gain - JKAMP ENSG00000050130 CDS Human protein_coding chr14:59965537 chr14:59965536 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_24372 0 0 1 0 2 JKAMP chr14:59965445 3'AG 59965445 Downstream 92bp 22433 chr14 59965536 59965536 1 + G T LUAD 59965537 + 59965517 59965557 41 GAAGATTGCATGTGGGTTAGGGAAATCTGATCGATTTAAAA GAAGATTGCATGTGGGTTATGGAAATCTGATCGATTTAAAA < 41bp 0.656214957706817 0.882333244748173 NA NA prediction 0.452236574082711 Functional Gain - JKAMP ENSG00000050130 CDS Human protein_coding chr14:59965537 chr14:59965536 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_24372 0 0 1 0 2 JKAMP chr14:59965626 5'GT 59965626 Upstream 91bp 22434 chr3 138189830 138189830 1 + G T COAD 138189831 + 138189811 138189851 41 CTTTCAGCTGGACCACTCAGGCCTGGACAGCCTCATCTCCA CTTTCAGCTGGACCACTCATGCCTGGACAGCCTCATCTCCA < 41bp 0.376609104556762 0.726118071081646 NA NA prediction 0.452236142163291 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138189831 chr3:138189830 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24373 0 0 0 1 1 ESYT3 chr3:138189868 5'GT 138189868 Upstream 39bp 22435 chr3 196730759 196730759 1 + G A rs41292039 196730760 + 196730740 196730780 41 CCAGGGGAGGCGGCAGGGCGGGCCTGTCCTACCTGCGCCCG CCAGGGGAGGCGGCAGGGCAGGCCTGTCCTACCTGCGCCCG < 41bp 0.506554658534676 0.732670706655497 NA NA prediction 0.452232096241643 Functional Gain - MELTF-AS1 ENSG00000228109 ncRNA_exonic Human protein_coding chr3:196730760 chr3:196730759 . . 0 20 hm7G_associated_SNPs_24374 0 0 1 0 1 MELTF chr3:196730841 5'GT 196730841 Upstream 83bp 22436 chrX 140984759 140984759 1 + G T UCEC 140984760 + 140984740 140984780 41 CTCCCAAGATCTCTCCCCAGGGTCCTCCGCAGAGTCCTCCC CTCCCAAGATCTCTCCCCATGGTCCTCCGCAGAGTCCTCCC < 41bp 0.376584120852666 0.726108195010263 NA NA prediction 0.452216390020526 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140984760 chrX:140984759 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_24375 0 0 0 0 1 MAGEC3 chrX:140984668 3'AG 140984668 Downstream 92bp 22437 chr1 148933342 148933342 1 + G T LUAD 148933343 + 148933323 148933363 41 CCTCTGGGAGCAGAAGGGAGGCTCCAAGACCTCATCAACAA CCTCTGGGAGCAGAAGGGATGCTCCAAGACCTCATCAACAA < 41bp 0.654316696520976 0.880423085046417 NA NA prediction 0.452212777050882 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148933343 chr1:148933342 . . 0 20 hm7G_associated_SNPs_24376 0 0 0 4 2 LOC645166 chr1:148933291 3'AG 148933291 Downstream 52bp 22438 chr1 148933342 148933342 1 + G T LUAD 148933343 + 148933323 148933363 41 CCTCTGGGAGCAGAAGGGAGGCTCCAAGACCTCATCAACAA CCTCTGGGAGCAGAAGGGATGCTCCAAGACCTCATCAACAA < 41bp 0.654316696520976 0.880423085046417 NA NA prediction 0.452212777050882 Functional Gain - LOC645166 ENSG00000232527 ncRNA_exonic Human lincRNA chr1:148933343 chr1:148933342 . . 0 20 hm7G_associated_SNPs_24376 0 0 0 4 2 LOC645166 chr1:148933368 5'GT 148933368 Upstream 27bp 22439 chr2 27521462 27521462 1 + G A rs541468362 27521463 + 27521443 27521483 41 TCCTCTATGGCAGTCCCGGGGCTCCACCACTGTGTCTTCAG TCCTCTATGGCAGTCCCGGAGCTCCACCACTGTGTCTTCAG < 41bp 0.505854610075626 0.731956495297625 NA NA prediction 0.452203770443999 Functional Gain - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27521463 chr2:27521462 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_24377 0 0 0 0 1 TRIM54 chr2:27521435 3'AG 27521435 Downstream 28bp 22440 chr17 4675383 4675383 1 + G T LUSC 4675384 + 4675364 4675404 41 CATGGGCGGCTTCATTGGCGGGGGCCTAATGGTGAGAAGGC CATGGGCGGCTTCATTGGCTGGGGCCTAATGGTGAGAAGGC < 41bp 0.655829662699772 0.88190822722357 NA NA prediction 0.452157129047595 Functional Gain - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4675384 chr17:4675383 nonsynonymous SNV 0.796 4 20 hm7G_associated_SNPs_24379 0 0 0 0 1 TM4SF5 chr17:4675394 5'GT 4675394 Upstream 12bp 22441 chrX 71360608 71360608 1 + G T rs147594691 71360609 + 71360589 71360629 41 AGGCTGACAGTGAAAGGGAGGCAAGCCCTCTGGGTTAGTAA AGGCTGACAGTGAAAGGGATGCAAGCCCTCTGGGTTAGTAA < 41bp 0.402173862295964 0.726053027939962 NA NA prediction 0.452106055879923 Functional Gain - NHSL2 ENSG00000204131 CDS Human protein_coding chrX:71360609 chrX:71360608 nonsynonymous SNV 0.472 1 20 hm7G_associated_SNPs_24383 0 0 0 0 1 NHSL2 chrX:71360621 5'GT 71360621 Upstream 14bp 22442 chr1 158064446 158064446 1 + G T LUAD 158064447 + 158064427 158064467 41 CCCCCAGGACCCCACCAATGGCTACTACAACGTGCGTGCCC CCCCCAGGACCCCACCAATTGCTACTACAACGTGCGTGCCC < 41bp 0.382907746754254 0.72604348845413 NA NA prediction 0.452086976908259 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158064447 chr1:158064446 nonsynonymous SNV 0.960 4 20 hm7G_associated_SNPs_24385 0 0 0 0 1 KIRREL chr1:158064434 3'AG 158064434 Downstream 13bp 22443 chr16 630964 630964 1 + G T GBM 630965 + 630945 630985 41 CGGCTCTGCCGGCCCTACAGGCTGGCGGGTAAGTGCTGCGT CGGCTCTGCCGGCCCTACATGCTGGCGGGTAAGTGCTGCGT < 41bp 0.673149487923081 0.899192939166833 NA NA prediction 0.452086902487504 Functional Gain - PIGQ ENSG00000007541 CDS Human protein_coding chr16:630965 chr16:630964 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_24386 0 0 0 0 1 PIGQ chr16:630972 5'GT 630972 Upstream 9bp 22444 chr12 82796776 82796776 1 + G T UCEC 82796777 + 82796757 82796797 41 TAAAGGATTGTTTGATGGTGGGTCTCCACACTTGTGGTGAT TAAAGGATTGTTTGATGGTTGGTCTCCACACTTGTGGTGAT < 41bp 0.649954918237454 0.875987635797403 NA NA prediction 0.452065435119898 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82796777 chr12:82796776 synonymous SNV . 0 20 hm7G_associated_SNPs_24388 0 0 0 0 1 METTL25 chr12:82796762 3'AG 82796762 Downstream 15bp 22445 chr10 29578131 29578131 1 + G T LUAD 29578132 + 29578112 29578152 41 AACTGAGAAGTCAGCCTCTGGGGCAGGCACCAGGAATCTGC AACTGAGAAGTCAGCCTCTTGGGCAGGCACCAGGAATCTGC < 41bp 0.400424429183267 0.725999432302806 NA NA prediction 0.451998864605612 Functional Gain - LYZL1 ENSG00000120563 CDS Human protein_coding chr10:29578132 chr10:29578131 nonsynonymous SNV 0.009 2 20 hm7G_associated_SNPs_24391 0 0 0 0 1 LYZL1 chr10:29578159 5'GT 29578159 Upstream 29bp 22446 chrX 38422298 38422298 1 + G T UCEC 38422299 + 38422279 38422319 41 GACTGTTTGCAATGGTCAAGGAAGAAGCAGAGATTTATTGA GACTGTTTGCAATGGTCAATGAAGAAGCAGAGATTTATTGA < 41bp 0.400217451586489 0.725995542784125 NA NA prediction 0.451991085568251 Functional Gain - TSPAN7 ENSG00000156298 CDS Human protein_coding chrX:38422299 chrX:38422298 stopgain . 0 20 hm7G_associated_SNPs_24392 0 0 0 0 2 TSPAN7 chrX:38422209 3'AG 38422209 Downstream 90bp 22447 chrX 38422298 38422298 1 + G T UCEC 38422299 + 38422279 38422319 41 GACTGTTTGCAATGGTCAAGGAAGAAGCAGAGATTTATTGA GACTGTTTGCAATGGTCAATGAAGAAGCAGAGATTTATTGA < 41bp 0.400217451586489 0.725995542784125 NA NA prediction 0.451991085568251 Functional Gain - TSPAN7 ENSG00000156298 CDS Human protein_coding chrX:38422299 chrX:38422298 stopgain . 0 20 hm7G_associated_SNPs_24392 0 0 0 0 2 TSPAN7 chrX:38422392 5'GT 38422392 Upstream 95bp 22448 chr9 90401733 90401733 1 + G T UCEC 90401734 + 90401714 90401754 41 TGCTAAGTGGTGGGGATGAGGATCACGATGAAGACAAATGG TGCTAAGTGGTGGGGATGATGATCACGATGAAGACAAATGG < 41bp 0.614425087329264 0.84038677220997 NA NA prediction 0.451923369761412 Functional Gain - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90401734 chr9:90401733 . . 0 20 hm7G_associated_SNPs_24396 0 0 0 0 1 CTSL3P chr9:90401662 3'AG 90401662 Downstream 72bp 22449 chr14 58678098 58678098 1 + G T SARC 58678099 + 58678079 58678119 41 GTCCTAGATTGTGGATATAGGGAAAGCCTGGTGTTACCCAT GTCCTAGATTGTGGATATATGGAAAGCCTGGTGTTACCCAT < 41bp 0.650068102932538 0.876029758920238 NA NA prediction 0.4519233119754 Functional Gain - ACTR10 ENSG00000131966 CDS Human protein_coding chr14:58678099 chr14:58678098 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24397 0 0 1 0 1 ACTR10 chr14:58678010 3'AG 58678010 Downstream 89bp 22450 chr17 73554312 73554312 1 + G A rs147740967 73554313 + 73554293 73554333 41 GCAGATCCACCTCCTGCCCGGCCAGGTGAGGGACCTGGGGT GCAGATCCACCTCCTGCCCAGCCAGGTGAGGGACCTGGGGT < 41bp 0.515529467423464 0.741485502060154 NA NA prediction 0.45191206927338 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73554313 chr17:73554312 nonsynonymous SNV 0.961 2 20 hm7G_associated_SNPs_24399 0 0 1 0 2 LLGL2 chr17:73554236 3'AG 73554236 Downstream 77bp 22451 chr17 73554312 73554312 1 + G A rs147740967 73554313 + 73554293 73554333 41 GCAGATCCACCTCCTGCCCGGCCAGGTGAGGGACCTGGGGT GCAGATCCACCTCCTGCCCAGCCAGGTGAGGGACCTGGGGT < 41bp 0.515529467423464 0.741485502060154 NA NA prediction 0.45191206927338 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73554313 chr17:73554312 nonsynonymous SNV 0.961 2 20 hm7G_associated_SNPs_24399 0 0 1 0 2 LLGL2 chr17:73554317 5'GT 73554317 Upstream 6bp 22452 chr11 61978000 61978000 1 + G T LUSC 61978001 + 61977981 61978021 41 ACAGTGATGCCGCTGCAGAGGCTATGGGGAAATTCAAGCAG ACAGTGATGCCGCTGCAGATGCTATGGGGAAATTCAAGCAG < 41bp 0.658826908947386 0.884747907158909 NA NA prediction 0.451841996423046 Functional Gain - SCGB2A1 ENSG00000124939 CDS Human protein_coding chr11:61978001 chr11:61978000 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_24403 0 0 0 0 1 SCGB2A1 chr11:61978072 5'GT 61978072 Upstream 73bp 22453 chr3 12573145 12573145 1 + G T UCEC 12573146 + 12573126 12573166 41 TCACCAGAATGTATGAAAAGGATTAAAGTTCAGGTGGGTAA TCACCAGAATGTATGAAAATGATTAAAGTTCAGGTGGGTAA < 41bp 0.475878966383154 0.725917185660717 NA NA prediction 0.451834371321435 Functional Gain - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12573146 chr3:12573145 nonsynonymous SNV 0.700 3 20 hm7G_associated_SNPs_24404 0 0 1 0 1 TSEN2 chr3:12573069 3'AG 12573069 Downstream 77bp 22454 chr16 56660853 56660853 1 + G T HNSC 56660854 + 56660834 56660874 41 AGGGCTGCGTCTGCAAAGGGGCATCGGAGAAGTGCAGCTGC AGGGCTGCGTCTGCAAAGGTGCATCGGAGAAGTGCAGCTGC < 41bp 0.655225353837415 0.881139179847759 NA NA prediction 0.451827652020688 Functional Gain - MT1E ENSG00000169715 CDS Human protein_coding chr16:56660854 chr16:56660853 synonymous SNV . 0 20 hm7G_associated_SNPs_24405 0 0 1 0 1 MT1E chr16:56660792 3'AG 56660792 Downstream 62bp 22455 chrX 55117814 55117814 1 + G T COAD 55117815 + 55117795 55117835 41 TGGCTCTGCTTAAGATAGAGGATGAGCCTGGAGATGGTCCT TGGCTCTGCTTAAGATAGATGATGAGCCTGGAGATGGTCCT < 41bp 0.653387816832121 0.87929351383138 NA NA prediction 0.451811393998517 Functional Gain - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117815 chrX:55117814 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_24406 0 0 0 0 2 PAGE2 chrX:55117765 3'AG 55117765 Downstream 50bp 22456 chrX 55117814 55117814 1 + G T COAD 55117815 + 55117795 55117835 41 TGGCTCTGCTTAAGATAGAGGATGAGCCTGGAGATGGTCCT TGGCTCTGCTTAAGATAGATGATGAGCCTGGAGATGGTCCT < 41bp 0.653387816832121 0.87929351383138 NA NA prediction 0.451811393998517 Functional Gain - PAGE2 ENSG00000234068 CDS Human protein_coding chrX:55117815 chrX:55117814 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_24406 0 0 0 0 2 PAGE2 chrX:55117890 5'GT 55117890 Upstream 77bp 22457 chr2 179436153 179436153 1 + G T LUSC 179436154 + 179436134 179436174 41 GAACTTTGAATGGATATTGGGCTACAGTAGGCTCTGAATTG GAACTTTGAATGGATATTGTGCTACAGTAGGCTCTGAATTG < 41bp 0.437985482661631 0.725896424074961 NA NA prediction 0.451792848149921 Functional Gain - TTN ENSG00000155657 CDS Human protein_coding chr2:179436154 chr2:179436153 synonymous SNV . 0 20 hm7G_associated_SNPs_24407 0 0 1 0 1 TTN chr2:179436176 5'GT 179436176 Upstream 24bp 22458 chr1 6505779 6505779 1 + G A rs139332523 6505780 + 6505760 6505800 41 ACATGGACATGCTGAACCCGGAGCTGGGCCTGCCTCGGGGC ACATGGACATGCTGAACCCAGAGCTGGGCCTGCCTCGGGGC < 41bp 0.499571173993983 0.725891679115349 NA NA prediction 0.451783358230697 Functional Gain - ESPN ENSG00000187017 CDS Human protein_coding chr1:6505780 chr1:6505779 synonymous SNV . 0 20 hm7G_associated_SNPs_24408 0 0 0 0 1 ESPN chr1:6505724 3'AG 6505724 Downstream 56bp 22459 chr12 102569310 102569310 1 + G T LUSC 102569311 + 102569291 102569331 41 AAAGATGCAACTGATTAAAGGCCAAAACAGCAGGGATCCTT AAAGATGCAACTGATTAAATGCCAAAACAGCAGGGATCCTT < 41bp 0.650572915783762 0.876455146946208 NA NA prediction 0.451764462324891 Functional Gain - PARPBP ENSG00000185480 CDS Human protein_coding chr12:102569311 chr12:102569310 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_24409 0 0 0 0 1 PARPBP chr12:102569261 3'AG 102569261 Downstream 50bp 22460 chr1 32089130 32089130 1 + G A UCEC 32089131 + 32089111 32089151 41 GTGTGCTGGACAGATCCCCGGCACCACCTCAGCACTGGTGC GTGTGCTGGACAGATCCCCAGCACCACCTCAGCACTGGTGC < 41bp 0.504378650443124 0.730258587331553 NA NA prediction 0.451759873776857 Functional Gain - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32089131 chr1:32089130 nonsynonymous SNV 0.114 2 20 hm7G_associated_SNPs_24410 0 0 0 0 1 HCRTR1 chr1:32089124 3'AG 32089124 Downstream 7bp 22461 chr10 31812949 31812949 1 + G T KIRP 31812950 + 31812930 31812970 41 CCGCCCAAAAAGAAAATGCGGAAGACAGAAAATGGAATGTA CCGCCCAAAAAGAAAATGCTGAAGACAGAAAATGGAATGTA < 41bp 0.631549345984914 0.857427832495676 NA NA prediction 0.451756973021526 Functional Gain - ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31812950 chr10:31812949 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24411 0 0 1 0 1 ZEB1 chr10:31812861 3'AG 31812861 Downstream 89bp 22462 chr11 44089249 44089249 1 + G T LGG 44089250 + 44089230 44089270 41 CCACCTGCATGCAGGACCTGGGCAGTAGCCATGGGGAAGAT CCACCTGCATGCAGGACCTTGGCAGTAGCCATGGGGAAGAT < 41bp 0.484451538552765 0.725876111517401 NA NA prediction 0.451752223034802 Functional Gain - ACCS ENSG00000110455 CDS Human protein_coding chr11:44089250 chr11:44089249 synonymous SNV . 0 20 hm7G_associated_SNPs_24412 0 0 0 0 2 ACCS chr11:44089178 3'AG 44089178 Downstream 72bp 22463 chr11 44089249 44089249 1 + G T LGG 44089250 + 44089230 44089270 41 CCACCTGCATGCAGGACCTGGGCAGTAGCCATGGGGAAGAT CCACCTGCATGCAGGACCTTGGCAGTAGCCATGGGGAAGAT < 41bp 0.484451538552765 0.725876111517401 NA NA prediction 0.451752223034802 Functional Gain - ACCS ENSG00000110455 CDS Human protein_coding chr11:44089250 chr11:44089249 synonymous SNV . 0 20 hm7G_associated_SNPs_24412 0 0 0 0 2 ACCS chr11:44089328 5'GT 44089328 Upstream 80bp 22464 chr19 54393240 54393240 1 + G A rs148370843 54393241 + 54393221 54393261 41 GCCTGCAGCTGGAGATCCGGGCTCCCACAGCAGATGAGATC GCCTGCAGCTGGAGATCCGAGCTCCCACAGCAGATGAGATC < 41bp 0.496511167021916 0.72585788921315 NA NA prediction 0.4517157784263 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54393241 chr19:54393240 synonymous SNV . 0 20 hm7G_associated_SNPs_24414 0 0 0 0 1 PRKCG chr19:54393271 5'GT 54393271 Upstream 32bp 22465 chr16 50756539 50756539 1 + G T STAD 50756540 + 50756520 50756560 41 TTGGCCTTTTCAGATTCTGGGGCAACAGAGTGGGTGACGAG TTGGCCTTTTCAGATTCTGTGGCAACAGAGTGGGTGACGAG < 41bp 0.66237253828508 0.888221003737918 NA NA prediction 0.451696930905677 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50756540 chr16:50756539 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24415 0 0 0 1 2 NOD2 chr16:50756533 3'AG 50756533 Downstream 7bp 22466 chr16 50756539 50756539 1 + G T STAD 50756540 + 50756520 50756560 41 TTGGCCTTTTCAGATTCTGGGGCAACAGAGTGGGTGACGAG TTGGCCTTTTCAGATTCTGTGGCAACAGAGTGGGTGACGAG < 41bp 0.66237253828508 0.888221003737918 NA NA prediction 0.451696930905677 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50756540 chr16:50756539 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24415 0 0 0 1 2 NOD2 chr16:50756616 5'GT 50756616 Upstream 78bp 22467 chr14 76455229 76455229 1 + G T UCEC 76455230 + 76455210 76455250 41 TTCTGTTTCTCCTTACAGAGGGCCAAGATGGGTCGCCGAGC TTCTGTTTCTCCTTACAGATGGCCAAGATGGGTCGCCGAGC < 41bp 0.668975545666268 0.894779914211085 NA NA prediction 0.451608737089633 Functional Gain - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76455230 chr14:76455229 nonsynonymous SNV 0.828 1 20 hm7G_associated_SNPs_24419 0 0 0 1 2 IFT43 chr14:76455228 3'AG 76455228 Downstream 2bp 22468 chr14 76455229 76455229 1 + G T UCEC 76455230 + 76455210 76455250 41 TTCTGTTTCTCCTTACAGAGGGCCAAGATGGGTCGCCGAGC TTCTGTTTCTCCTTACAGATGGCCAAGATGGGTCGCCGAGC < 41bp 0.668975545666268 0.894779914211085 NA NA prediction 0.451608737089633 Functional Gain - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76455230 chr14:76455229 nonsynonymous SNV 0.828 1 20 hm7G_associated_SNPs_24419 0 0 0 1 2 IFT43 chr14:76455320 5'GT 76455320 Upstream 92bp 22469 chrX 48923034 48923034 1 + G T rs144506890 48923035 + 48923015 48923055 41 AGCGCCCCTCACCACCCAAGGCTTGGGACCAGCTGCGGGCA AGCGCCCCTCACCACCCAATGCTTGGGACCAGCTGCGGGCA < 41bp 0.680555605801265 0.906346784495949 NA NA prediction 0.451582357389368 Functional Gain - CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48923035 chrX:48923034 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_24420 0 0 0 0 1 CCDC120 chrX:48922985 3'AG 48922985 Downstream 50bp 22470 chr20 31601730 31601730 1 + G T LUAD 31601731 + 31601711 31601751 41 CTGCCTGCTCTTTATTCTCGGGCCACGCCAACGAGTTTGAT CTGCCTGCTCTTTATTCTCTGGCCACGCCAACGAGTTTGAT < 41bp 0.383186445950905 0.72576563556054 NA NA prediction 0.451531271121079 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31601731 chr20:31601730 synonymous SNV . 0 20 hm7G_associated_SNPs_24422 0 0 0 0 1 BPIFB2 chr20:31601762 5'GT 31601762 Upstream 33bp 22471 chr6 43171171 43171171 1 + G T UCEC 43171172 + 43171152 43171192 41 CAGGGCGGCATTGACACCCGGGTTCGGGGTGTGGAGGTCCT CAGGGCGGCATTGACACCCTGGTTCGGGGTGTGGAGGTCCT < 41bp 0.67593250273272 0.901692828607915 NA NA prediction 0.45152065175039 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43171172 chr6:43171171 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24423 0 0 0 0 1 CUL9 chr6:43171155 3'AG 43171155 Downstream 17bp 22472 chr7 150710405 150710405 1 - C A COAD 150710404 - 150710384 150710424 41 CCAAACACCCCGCGCTGCTGGGCGTTCTGCACCTCGTCGCG CCAAACACCCCGCGCTGCTTGGCGTTCTGCACCTCGTCGCG < 41bp 0.383084932471884 0.725758716304054 NA NA prediction 0.451517432608108 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150710404 chr7:150710405 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_24425 0 0 0 0 1 NOS3 chr7:150710496 3'AG 150710496 Downstream 92bp 22473 chr9 7015892 7015892 1 + G T LUSC 7015893 + 7015873 7015913 41 CATGAGATCTGTGATGGATGGCTGTGTGCCCGGTGCAAAAG CATGAGATCTGTGATGGATTGCTGTGTGCCCGGTGCAAAAG < 41bp 0.400455741626269 0.725749127361135 NA NA prediction 0.451498254722269 Functional Gain - KDM4C ENSG00000107077 CDS Human protein_coding chr9:7015893 chr9:7015892 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24426 0 0 1 0 2 KDM4C chr9:7015853 3'AG 7015853 Downstream 40bp 22474 chr9 7015892 7015892 1 + G T LUSC 7015893 + 7015873 7015913 41 CATGAGATCTGTGATGGATGGCTGTGTGCCCGGTGCAAAAG CATGAGATCTGTGATGGATTGCTGTGTGCCCGGTGCAAAAG < 41bp 0.400455741626269 0.725749127361135 NA NA prediction 0.451498254722269 Functional Gain - KDM4C ENSG00000107077 CDS Human protein_coding chr9:7015893 chr9:7015892 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24426 0 0 1 0 2 KDM4C chr9:7015929 5'GT 7015929 Upstream 38bp 22475 chr1 156893758 156893758 1 + G T rs529320198 156893759 + 156893739 156893779 41 AGAGGAGTACCAGTGCTCCGGGGTCCTCGAGACCGACTTCG AGAGGAGTACCAGTGCTCCTGGGTCCTCGAGACCGACTTCG < 41bp 0.401803818909044 0.725747123666 NA NA prediction 0.451494247332 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156893759 chr1:156893758 nonsynonymous SNV 0.426 4 20 hm7G_associated_SNPs_24427 0 0 0 0 1 LRRC71 chr1:156893741 3'AG 156893741 Downstream 18bp 22476 chr12 121175680 121175680 1 + G A SKCM 121175681 + 121175661 121175701 41 CTGCGTCCACCACCGCCCGGGCCGAGGGCGACTCATGGGTT CTGCGTCCACCACCGCCCGAGCCGAGGGCGACTCATGGGTT < 41bp 0.508133452977224 0.73382387824503 NA NA prediction 0.451380850535612 Functional Gain - ACADS ENSG00000122971 CDS Human protein_coding chr12:121175681 chr12:121175680 synonymous SNV . 0 20 hm7G_associated_SNPs_24434 0 0 1 0 1 ACADS chr12:121175640 3'AG 121175640 Downstream 41bp 22477 chr19 3734388 3734388 1 + G A UCEC 3734389 + 3734369 3734409 41 CACATCCCACCACCACCCCGGCATGCTCAGCGGAGCCCCGA CACATCCCACCACCACCCCAGCATGCTCAGCGGAGCCCCGA < 41bp 0.487889889136107 0.725667637298067 NA NA prediction 0.451335274596133 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3734389 chr19:3734388 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_24441 0 0 0 0 2 TJP3 chr19:3734325 3'AG 3734325 Downstream 64bp 22478 chr19 3734388 3734388 1 + G A UCEC 3734389 + 3734369 3734409 41 CACATCCCACCACCACCCCGGCATGCTCAGCGGAGCCCCGA CACATCCCACCACCACCCCAGCATGCTCAGCGGAGCCCCGA < 41bp 0.487889889136107 0.725667637298067 NA NA prediction 0.451335274596133 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3734389 chr19:3734388 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_24441 0 0 0 0 2 TJP3 chr19:3734433 5'GT 3734433 Upstream 46bp 22479 chr19 45315612 45315612 1 + G A UCEC 45315613 + 45315593 45315633 41 GGTGAGGGCAGGGGCGGCAGGCACTGCTGAGGCCACTGCGC GGTGAGGGCAGGGGCGGCAAGCACTGCTGAGGCCACTGCGC < 41bp 0.536278197162109 0.761939475716743 NA NA prediction 0.451322557109269 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45315613 chr19:45315612 nonsynonymous SNV 0.098 0 20 hm7G_associated_SNPs_24443 0 0 1 0 1 BCAM chr19:45315648 5'GT 45315648 Upstream 37bp 22480 chr2 71298877 71298877 1 + G T CESC 71298878 + 71298858 71298898 41 ATCCTGATCGAGGAGCTGAGGGACCGATTTCCCTACCTGAG ATCCTGATCGAGGAGCTGATGGACCGATTTCCCTACCTGAG < 41bp 0.672865809192879 0.898526591088408 NA NA prediction 0.451321563791059 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71298878 chr2:71298877 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_24444 0 0 1 0 3 NAGK chr2:71298816 3'AG 71298816 Downstream 62bp 22481 chr2 71298877 71298877 1 + G T CESC 71298878 + 71298858 71298898 41 ATCCTGATCGAGGAGCTGAGGGACCGATTTCCCTACCTGAG ATCCTGATCGAGGAGCTGATGGACCGATTTCCCTACCTGAG < 41bp 0.672865809192879 0.898526591088408 NA NA prediction 0.451321563791059 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71298878 chr2:71298877 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_24444 0 0 1 0 3 NAGK chr2:71298957 5'GT 71298957 Upstream 81bp 22482 chr2 71298877 71298877 1 + G T CESC 71298878 + 71298858 71298898 41 ATCCTGATCGAGGAGCTGAGGGACCGATTTCCCTACCTGAG ATCCTGATCGAGGAGCTGATGGACCGATTTCCCTACCTGAG < 41bp 0.672865809192879 0.898526591088408 NA NA prediction 0.451321563791059 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71298878 chr2:71298877 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_24444 0 0 1 0 3 NAGK chr2:71298965 5'GT 71298965 Upstream 89bp 22483 chr1 177242650 177242650 1 + G T SARC 177242651 + 177242631 177242671 41 AGACCAGGACCGGTCCTCTGGGCTGCAGCAACTATGACAAT AGACCAGGACCGGTCCTCTTGGCTGCAGCAACTATGACAAT < 41bp 0.380198867662776 0.72565970089396 NA NA prediction 0.451319401787921 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177242651 chr1:177242650 synonymous SNV . 0 20 hm7G_associated_SNPs_24445 0 0 0 0 2 BRINP2 chr1:177242624 3'AG 177242624 Downstream 27bp 22484 chr1 177242650 177242650 1 + G T SARC 177242651 + 177242631 177242671 41 AGACCAGGACCGGTCCTCTGGGCTGCAGCAACTATGACAAT AGACCAGGACCGGTCCTCTTGGCTGCAGCAACTATGACAAT < 41bp 0.380198867662776 0.72565970089396 NA NA prediction 0.451319401787921 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177242651 chr1:177242650 synonymous SNV . 0 20 hm7G_associated_SNPs_24445 0 0 0 0 2 BRINP2 chr1:177242729 5'GT 177242729 Upstream 80bp 22485 chr8 145584284 145584284 1 + G T UCEC 145584285 + 145584265 145584305 41 GGGCGGCCTCTCTCTGCTGGGCGTGTTCTGTGGGGGCTACC GGGCGGCCTCTCTCTGCTGTGCGTGTTCTGTGGGGGCTACC < 41bp 0.372215302861299 0.725658766049976 NA NA prediction 0.451317532099951 Functional Gain - SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145584285 chr8:145584284 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_24446 0 0 1 0 2 SLC52A2 chr8:145584250 3'AG 145584250 Downstream 35bp 22486 chr8 145584284 145584284 1 + G T UCEC 145584285 + 145584265 145584305 41 GGGCGGCCTCTCTCTGCTGGGCGTGTTCTGTGGGGGCTACC GGGCGGCCTCTCTCTGCTGTGCGTGTTCTGTGGGGGCTACC < 41bp 0.372215302861299 0.725658766049976 NA NA prediction 0.451317532099951 Functional Gain - SLC52A2 ENSG00000185803 CDS Human protein_coding chr8:145584285 chr8:145584284 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_24446 0 0 1 0 2 SLC52A2 chr8:145584373 5'GT 145584373 Upstream 90bp 22487 chr4 39109240 39109240 1 + G T LUAD 39109241 + 39109221 39109261 41 GTAGGAGGACATGATGGCTGGAGCTATCTGAACACAGTGGA GTAGGAGGACATGATGGCTTGAGCTATCTGAACACAGTGGA < 41bp 0.386231966794872 0.72564466013539 NA NA prediction 0.451289320270781 Functional Gain - KLHL5 ENSG00000109790 CDS Human protein_coding chr4:39109241 chr4:39109240 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24447 0 0 1 0 1 KLHL5 chr4:39109189 3'AG 39109189 Downstream 52bp 22488 chr9 139929160 139929160 1 + G A rs374467794 139929161 + 139929141 139929181 41 CCACGCCTGCGGGTGACCCGGCCTCTGGTGCCAGAGCCTGC CCACGCCTGCGGGTGACCCAGCCTCTGGTGCCAGAGCCTGC < 41bp 0.502365939970337 0.728006578015902 NA NA prediction 0.45128127609113 Functional Gain - C9orf139 ENSG00000180539 CDS Human antisense chr9:139929161 chr9:139929160 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_24449 0 0 0 0 1 C9orf139 chr9:139929102 3'AG 139929102 Downstream 59bp 22489 chr16 67035233 67035233 1 + G T STAD 67035234 + 67035214 67035254 41 GGACGACAGCCACGCGCGCGGGAACTGGGGGCTGCTGGACC GGACGACAGCCACGCGCGCTGGAACTGGGGGCTGCTGGACC < 41bp 0.675938028157569 0.901569768494678 NA NA prediction 0.451263480674217 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67035234 chr16:67035233 nonsynonymous SNV 0.027 3 20 hm7G_associated_SNPs_24450 0 0 0 0 1 CES4A chr16:67035211 3'AG 67035211 Downstream 23bp 22490 chr13 51918464 51918464 1 + G T LUAD 51918465 + 51918445 51918485 41 AAGGCACCGAGATGGAGCTGGCCTGCAGCCTTTTTGTGCAA AAGGCACCGAGATGGAGCTTGCCTGCAGCCTTTTTGTGCAA < 41bp 0.371335178808859 0.725627063733325 NA NA prediction 0.451254127466651 Functional Gain - SERPINE3 ENSG00000253309 CDS Human protein_coding chr13:51918465 chr13:51918464 synonymous SNV . 0 20 hm7G_associated_SNPs_24451 0 0 0 0 1 SERPINE3 chr13:51918388 3'AG 51918388 Downstream 77bp 22491 chr6 133783546 133783546 1 + G T LUAD 133783547 + 133783527 133783567 41 AGGCCAGACTCAGTATTCGGGGATGCAGCAGCCAGCCGTCT AGGCCAGACTCAGTATTCGTGGATGCAGCAGCCAGCCGTCT < 41bp 0.384869664831428 0.725616501795375 NA NA prediction 0.45123300359075 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783547 chr6:133783546 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_24453 0 0 1 0 2 EYA4 chr6:133783473 3'AG 133783473 Downstream 74bp 22492 chr6 133783546 133783546 1 + G T LUAD 133783547 + 133783527 133783567 41 AGGCCAGACTCAGTATTCGGGGATGCAGCAGCCAGCCGTCT AGGCCAGACTCAGTATTCGTGGATGCAGCAGCCAGCCGTCT < 41bp 0.384869664831428 0.725616501795375 NA NA prediction 0.45123300359075 Functional Gain - EYA4 ENSG00000112319 CDS Human protein_coding chr6:133783547 chr6:133783546 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_24453 0 0 1 0 2 EYA4 chr6:133783615 5'GT 133783615 Upstream 70bp 22493 chr4 57173763 57173763 1 + G T LUSC 57173764 + 57173744 57173784 41 ATGCCATTCCCATGAATAAGGCAAACAGTGGAGAGGCTAGC ATGCCATTCCCATGAATAATGCAAACAGTGGAGAGGCTAGC < 41bp 0.675094617394121 0.90068929691222 NA NA prediction 0.451189359036199 Functional Gain - KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57173764 chr4:57173763 nonsynonymous SNV 0.940 2 20 hm7G_associated_SNPs_24457 0 0 0 0 1 KIAA1211 chr4:57173701 3'AG 57173701 Downstream 63bp 22494 chr12 113810496 113810496 1 + G A UCEC 113810497 + 113810477 113810517 41 CACGGTGGTGAATTACTGCGGCCCCTTCGAGTATGAAGTCG CACGGTGGTGAATTACTGCAGCCCCTTCGAGTATGAAGTCG < 41bp 0.505838610925809 0.731424585736562 NA NA prediction 0.451171949621507 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113810497 chr12:113810496 nonsynonymous SNV 0.884 2 20 hm7G_associated_SNPs_24458 0 0 1 0 1 PLBD2 chr12:113810454 3'AG 113810454 Downstream 43bp 22495 chr12 50472251 50472251 1 + G T LUAD 50472252 + 50472232 50472272 41 CCTGCAAAGCTGTTACCATGGACTCGGATTTGGATTTCTTC CCTGCAAAGCTGTTACCATTGACTCGGATTTGGATTTCTTC < 41bp 0.370952558249533 0.725584995408128 NA NA prediction 0.451169990816256 Functional Gain - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50472252 chr12:50472251 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_24459 0 0 1 0 1 ASIC1 chr12:50472204 3'AG 50472204 Downstream 48bp 22496 chr16 2880476 2880476 1 + G T rs77092349 2880477 + 2880457 2880497 41 CACGCTTGCCCTCCTGGGGGGCCCCACCTGGGCAGGGAGTA CACGCTTGCCCTCCTGGGGTGCCCCACCTGGGCAGGGAGTA < 41bp 0.669774385552148 0.895354052866885 NA NA prediction 0.451159334629474 Functional Gain - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880477 chr16:2880476 nonsynonymous SNV 0.017 3 20 hm7G_associated_SNPs_24460 0 0 0 0 2 ZG16B chr16:2880416 3'AG 2880416 Downstream 61bp 22497 chr16 2880476 2880476 1 + G T rs77092349 2880477 + 2880457 2880497 41 CACGCTTGCCCTCCTGGGGGGCCCCACCTGGGCAGGGAGTA CACGCTTGCCCTCCTGGGGTGCCCCACCTGGGCAGGGAGTA < 41bp 0.669774385552148 0.895354052866885 NA NA prediction 0.451159334629474 Functional Gain - ZG16B ENSG00000162078 CDS Human protein_coding chr16:2880477 chr16:2880476 nonsynonymous SNV 0.017 3 20 hm7G_associated_SNPs_24460 0 0 0 0 2 ZG16B chr16:2880494 5'GT 2880494 Upstream 19bp 22498 chr19 48878954 48878954 1 + G T COAD 48878955 + 48878935 48878975 41 CCCAAAGAGTTCCTCCTGGGGAGCAGCAGTGCCCAGGCAGC CCCAAAGAGTTCCTCCTGGTGAGCAGCAGTGCCCAGGCAGC < 41bp 0.673773153155109 0.899344582974962 NA NA prediction 0.451142859639706 Functional Gain - SYNGR4 ENSG00000105467 CDS Human protein_coding chr19:48878955 chr19:48878954 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_24461 0 0 0 0 2 SYNGR4 chr19:48878870 3'AG 48878870 Downstream 85bp 22499 chr19 48878954 48878954 1 + G T COAD 48878955 + 48878935 48878975 41 CCCAAAGAGTTCCTCCTGGGGAGCAGCAGTGCCCAGGCAGC CCCAAAGAGTTCCTCCTGGTGAGCAGCAGTGCCCAGGCAGC < 41bp 0.673773153155109 0.899344582974962 NA NA prediction 0.451142859639706 Functional Gain - SYNGR4 ENSG00000105467 CDS Human protein_coding chr19:48878955 chr19:48878954 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_24461 0 0 0 0 2 SYNGR4 chr19:48879009 5'GT 48879009 Upstream 56bp 22500 chr22 29695615 29695615 1 + G T LUAD 29695616 + 29695596 29695636 41 TCGTGGCAGAGGTGGCCCTGGTGGCATGCGGGGAGGAAGAG TCGTGGCAGAGGTGGCCCTTGTGGCATGCGGGGAGGAAGAG < 41bp 0.672878263325128 0.898444560504812 NA NA prediction 0.451132594359368 Functional Gain - EWSR1 ENSG00000182944 CDS Human protein_coding chr22:29695616 chr22:29695615 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24462 0 0 1 0 1 EWSR1 chr22:29695589 3'AG 29695589 Downstream 27bp 22501 chr19 39997737 39997737 1 + G A rs115456333 39997738 + 39997718 39997758 41 GCTGCCGCGCCGGCTTCGCGGGTCCTCGCTGCGAGCACGAC GCTGCCGCGCCGGCTTCGCAGGTCCTCGCTGCGAGCACGAC < 41bp 0.518502742459785 0.744055712778283 NA NA prediction 0.451105940636997 Functional Gain - DLL3 ENSG00000090932 CDS Human protein_coding chr19:39997738 chr19:39997737 synonymous SNV . 0 20 hm7G_associated_SNPs_24463 1 0 0 0 1 DLL3 chr19:39997679 3'AG 39997679 Downstream 59bp 22502 chrX 67741255 67741255 1 + G T LUSC 67741256 + 67741236 67741276 41 GATAGTGAAAAAGATGGAGGGCCCCAATTTGCAGAGGTGTT GATAGTGAAAAAGATGGAGTGCCCCAATTTGCAGAGGTGTT < 41bp 0.660777034246365 0.886308363686733 NA NA prediction 0.451062658880736 Functional Gain - YIPF6 ENSG00000181704 CDS Human protein_coding chrX:67741256 chrX:67741255 nonsynonymous SNV 0.929 3 20 hm7G_associated_SNPs_24467 0 0 1 0 2 YIPF6 chrX:67741214 3'AG 67741214 Downstream 42bp 22503 chrX 67741255 67741255 1 + G T LUSC 67741256 + 67741236 67741276 41 GATAGTGAAAAAGATGGAGGGCCCCAATTTGCAGAGGTGTT GATAGTGAAAAAGATGGAGTGCCCCAATTTGCAGAGGTGTT < 41bp 0.660777034246365 0.886308363686733 NA NA prediction 0.451062658880736 Functional Gain - YIPF6 ENSG00000181704 CDS Human protein_coding chrX:67741256 chrX:67741255 nonsynonymous SNV 0.929 3 20 hm7G_associated_SNPs_24467 0 0 1 0 2 YIPF6 chrX:67741339 5'GT 67741339 Upstream 85bp 22504 chr1 230914831 230914831 1 + G T LUSC 230914832 + 230914812 230914852 41 GGAGGTGACGGTCCATCAGGGAAGCTGGGTTCGCGGCTCCA GGAGGTGACGGTCCATCAGTGAAGCTGGGTTCGCGGCTCCA < 41bp 0.674897904078188 0.900411620610422 NA NA prediction 0.451027433064468 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230914832 chr1:230914831 stopgain 0.828 1 20 hm7G_associated_SNPs_24468 0 0 0 0 1 CAPN9 chr1:230914879 5'GT 230914879 Upstream 49bp 22505 chr4 55564682 55564682 1 + G T UCEC 55564683 + 55564663 55564703 41 TGCATTGTTCTGTGGACCAGGAGGGCAAGTCAGTGCTGTCG TGCATTGTTCTGTGGACCATGAGGGCAAGTCAGTGCTGTCG < 41bp 0.388545985447651 0.725512887392942 NA NA prediction 0.451025774785884 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55564683 chr4:55564682 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_24469 0 0 0 0 1 KIT chr4:55564731 5'GT 55564731 Upstream 50bp 22506 chr15 101440957 101440957 1 + G T STAD 101440958 + 101440938 101440978 41 GATGTCAAAACAGAACAGGGGCCTCAGGTAATCCCCCTGGT GATGTCAAAACAGAACAGGTGCCTCAGGTAATCCCCCTGGT < 41bp 0.669178523533424 0.8946904469312 NA NA prediction 0.451023846795551 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101440958 chr15:101440957 nonsynonymous SNV 0.574 5 20 hm7G_associated_SNPs_24470 0 0 0 0 1 ALDH1A3 chr15:101440964 5'GT 101440964 Upstream 8bp 22507 chr22 44564486 44564486 1 + G T LUSC 44564487 + 44564467 44564507 41 TGTTTCCTTCTGCAGACGTGGTTAACTTGGACCTCAAATCC TGTTTCCTTCTGCAGACGTTGTTAACTTGGACCTCAAATCC < 41bp 0.403139053412336 0.725500026775469 NA NA prediction 0.451000053550939 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44564487 chr22:44564486 synonymous SNV . 0 20 hm7G_associated_SNPs_24472 0 0 1 0 1 PARVB chr22:44564482 3'AG 44564482 Downstream 5bp 22508 chr7 44146195 44146195 1 + G A SKCM 44146196 + 44146176 44146216 41 GAAAGGCAAGAAAGACAAAGGCCCCAAGGTGCCCAAGGAGT GAAAGGCAAGAAAGACAAAAGCCCCAAGGTGCCCAAGGAGT < 41bp 0.497118108627561 0.725497063549438 NA NA prediction 0.450994127098877 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44146196 chr7:44146195 nonsynonymous SNV 0.963 2 20 hm7G_associated_SNPs_24473 0 0 0 0 1 AEBP1 chr7:44146145 3'AG 44146145 Downstream 51bp 22509 chr2 74900936 74900936 1 + G T LUAD 74900937 + 74900917 74900957 41 GAGCGCATTAAAGTCCCACGGGTGGCCCGTGTGTGTGCGGT GAGCGCATTAAAGTCCCACTGGTGGCCCGTGTGTGTGCGGT < 41bp 0.370574869979729 0.725495801867626 NA NA prediction 0.450991603735251 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74900937 chr2:74900936 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_24474 0 0 0 0 1 SEMA4F chr2:74900955 5'GT 74900955 Upstream 20bp 22510 chr16 89256722 89256722 1 + G A GBM 89256723 + 89256703 89256743 41 ATGAGGCCCCGCTGCAGGCGGCTGCCCTTAGGGCTGAGCGG ATGAGGCCCCGCTGCAGGCAGCTGCCCTTAGGGCTGAGCGG < 41bp 0.524812135139528 0.750307626449206 NA NA prediction 0.450990982619356 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89256723 chr16:89256722 synonymous SNV . 0 20 hm7G_associated_SNPs_24475 0 0 0 0 1 CDH15 chr16:89256651 3'AG 89256651 Downstream 72bp 22511 chr15 48577373 48577373 1 + G T UCEC 48577374 + 48577354 48577394 41 AAGATAATGAGTGTGAAGAGGAAAGTGGAGGCATCCGAGGC AAGATAATGAGTGTGAAGATGAAAGTGGAGGCATCCGAGGC < 41bp 0.657429299263975 0.882895601126956 NA NA prediction 0.450932603725961 Functional Gain - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48577374 chr15:48577373 nonsynonymous SNV 0.169 2 20 hm7G_associated_SNPs_24476 0 0 0 0 1 SLC12A1 chr15:48577303 3'AG 48577303 Downstream 71bp 22512 chr17 43324288 43324288 1 + G A UCEC 43324289 + 43324269 43324309 41 GGCCGCCGCAGTGCCCGTCGGCGTCCCCCGGGCCCCCCACT GGCCGCCGCAGTGCCCGTCAGCGTCCCCCGGGCCCCCCACT < 41bp 0.526758152269084 0.752197034097282 NA NA prediction 0.450877763656396 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43324289 chr17:43324288 nonsynonymous SNV 0.971 0 20 hm7G_associated_SNPs_24478 0 0 0 0 1 FMNL1 chr17:43324234 3'AG 43324234 Downstream 55bp 22513 chr1 115420783 115420783 1 + G T BLCA 115420784 + 115420764 115420804 41 ATTTAACATTTCTGCTAGAGGAATCCAGAGATAAAGTTAAT ATTTAACATTTCTGCTAGATGAATCCAGAGATAAAGTTAAT < 41bp 0.448005134798659 0.725411562660831 NA NA prediction 0.450823125321663 Functional Gain - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115420784 chr1:115420783 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_24481 0 0 0 0 2 SYCP1 chr1:115420715 3'AG 115420715 Downstream 69bp 22514 chr1 115420783 115420783 1 + G T BLCA 115420784 + 115420764 115420804 41 ATTTAACATTTCTGCTAGAGGAATCCAGAGATAAAGTTAAT ATTTAACATTTCTGCTAGATGAATCCAGAGATAAAGTTAAT < 41bp 0.448005134798659 0.725411562660831 NA NA prediction 0.450823125321663 Functional Gain - SYCP1 ENSG00000198765 CDS Human protein_coding chr1:115420784 chr1:115420783 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_24481 0 0 0 0 2 SYCP1 chr1:115420823 5'GT 115420823 Upstream 41bp 22515 chrX 47039407 47039407 1 + G T LUSC 47039408 + 47039388 47039428 41 GCAGACCCAACTGAACCGCGGCTTTGCCTTCATCCAGCTCT GCAGACCCAACTGAACCGCTGCTTTGCCTTCATCCAGCTCT < 41bp 0.368649473455215 0.72536048411172 NA NA prediction 0.45072096822344 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47039408 chrX:47039407 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_24488 0 0 1 0 2 RBM10 chrX:47039436 5'GT 47039436 Upstream 30bp 22516 chrX 47039407 47039407 1 + G T LUSC 47039408 + 47039388 47039428 41 GCAGACCCAACTGAACCGCGGCTTTGCCTTCATCCAGCTCT GCAGACCCAACTGAACCGCTGCTTTGCCTTCATCCAGCTCT < 41bp 0.368649473455215 0.72536048411172 NA NA prediction 0.45072096822344 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47039408 chrX:47039407 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_24488 0 0 1 0 2 RBM10 chrX:47039439 5'GT 47039439 Upstream 33bp 22517 chr2 102959864 102959864 1 + G T GBM 102959865 + 102959845 102959885 41 CACACCGTAAGACTAAGTAGGAAAAATCCAAGTAAGGAGTG CACACCGTAAGACTAAGTATGAAAAATCCAAGTAAGGAGTG < 41bp 0.421725625150413 0.725348670677804 NA NA prediction 0.450697341355608 Functional Gain - IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102959865 chr2:102959864 nonsynonymous SNV 0.118 0 20 hm7G_associated_SNPs_24489 0 0 0 0 1 IL1RL1 chr2:102959875 5'GT 102959875 Upstream 12bp 22518 chr17 26653651 26653651 1 + G T OV 26653652 + 26653632 26653672 41 TCTCCACATTTCTGTTTGAGGATTTCTCCAAAGCCAGTGGT TCTCCACATTTCTGTTTGATGATTTCTCCAAAGCCAGTGGT < 41bp 0.646804523704895 0.87214328246444 NA NA prediction 0.45067751751909 Functional Gain - TMEM97 ENSG00000109084 CDS Human protein_coding chr17:26653652 chr17:26653651 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_24490 0 0 1 0 1 TMEM97 chr17:26653560 3'AG 26653560 Downstream 92bp 22519 chr17 48673984 48673984 1 + G T COAD 48673985 + 48673965 48674005 41 CCCAGCCTGGATGGTGATGGGGACAGGAAGAAGTGCTTGGC CCCAGCCTGGATGGTGATGTGGACAGGAAGAAGTGCTTGGC < 41bp 0.63763505764548 0.862966827568974 NA NA prediction 0.45066353984699 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48673985 chr17:48673984 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_24492 0 0 0 0 2 CACNA1G chr17:48673923 3'AG 48673923 Downstream 62bp 22520 chr17 48673984 48673984 1 + G T COAD 48673985 + 48673965 48674005 41 CCCAGCCTGGATGGTGATGGGGACAGGAAGAAGTGCTTGGC CCCAGCCTGGATGGTGATGTGGACAGGAAGAAGTGCTTGGC < 41bp 0.63763505764548 0.862966827568974 NA NA prediction 0.45066353984699 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48673985 chr17:48673984 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_24492 0 0 0 0 2 CACNA1G chr17:48674007 5'GT 48674007 Upstream 24bp 22521 chr11 62545524 62545524 1 + G T UCEC 62545525 + 62545505 62545545 41 GTGAACTCTACTTTCCTGAGGATCGAGAGGTGAACCTGGTG GTGAACTCTACTTTCCTGATGATCGAGAGGTGAACCTGGTG < 41bp 0.678537158660936 0.903865674460141 NA NA prediction 0.450657031598409 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62545525 chr11:62545524 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_24493 0 0 0 0 2 TAF6L chr11:62545450 3'AG 62545450 Downstream 75bp 22522 chr11 62545524 62545524 1 + G T UCEC 62545525 + 62545505 62545545 41 GTGAACTCTACTTTCCTGAGGATCGAGAGGTGAACCTGGTG GTGAACTCTACTTTCCTGATGATCGAGAGGTGAACCTGGTG < 41bp 0.678537158660936 0.903865674460141 NA NA prediction 0.450657031598409 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62545525 chr11:62545524 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_24493 0 0 0 0 2 TAF6L chr11:62545600 5'GT 62545600 Upstream 77bp 22523 chr15 72103180 72103180 1 + G T DLBC 72103181 + 72103161 72103201 41 GGAGTCTCCAGGCAGATGGGGCCTGGGGGAGGATCCCACAG GGAGTCTCCAGGCAGATGGTGCCTGGGGGAGGATCCCACAG < 41bp 0.642350338510002 0.867666653416175 NA NA prediction 0.450632629812345 Functional Gain - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72103181 chr15:72103180 . 0.999 1 20 hm7G_associated_SNPs_24495 0 0 0 0 1 NR2E3 chr15:72103201 5'GT 72103201 Upstream 22bp 22524 chr3 180324113 180324113 1 + G T CESC 180324114 + 180324094 180324134 41 ATGAATACAATAAAGCTTTGGAAATAGACAAACAAAACGTG ATGAATACAATAAAGCTTTTGAAATAGACAAACAAAACGTG < 41bp 0.657693863030214 0.883001903194512 NA NA prediction 0.450616080328596 Functional Gain - TTC14 ENSG00000163728 CDS Human protein_coding chr3:180324114 chr3:180324113 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24498 0 0 1 0 1 TTC14 chr3:180324160 5'GT 180324160 Upstream 48bp 22525 chr7 151052960 151052960 1 + G T UCEC 151052961 + 151052941 151052981 41 ACTTCCAGTTAGAGGAAGAGGAGCAAAATGAGGCCAAACTC ACTTCCAGTTAGAGGAAGATGAGCAAAATGAGGCCAAACTC < 41bp 0.407190557392789 0.725302492757895 NA NA prediction 0.45060498551579 Functional Gain - NUB1 ENSG00000013374 CDS Human protein_coding chr7:151052961 chr7:151052960 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_24499 0 0 1 0 1 NUB1 chr7:151053036 5'GT 151053036 Upstream 77bp 22526 chr7 74193668 74193668 1 + G A rs10614 74193669 + 74193649 74193689 41 CACACTTACCGAGTACTGCGGCACGCTCATGAGCCTGCCCA CACACTTACCGAGTACTGCAGCACGCTCATGAGCCTGCCCA < 41bp 0.513882078610998 0.739183592690799 NA NA prediction 0.450603028159601 Functional Gain - NCF1 ENSG00000158517 CDS Human protein_coding chr7:74193669 chr7:74193668 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_24500 1 0 0 0 1 NCF1 chr7:74193603 3'AG 74193603 Downstream 66bp 22527 chr9 17787399 17787399 1 + G T LUSC 17787400 + 17787380 17787420 41 CCAGCACTTGGTGAGGTCGGGGAGGCCATGCGGGAACTGTC CCAGCACTTGGTGAGGTCGTGGAGGCCATGCGGGAACTGTC < 41bp 0.667723838505759 0.893012364618857 NA NA prediction 0.450577052226195 Functional Gain - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17787400 chr9:17787399 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24502 0 0 0 0 1 SH3GL2 chr9:17787378 3'AG 17787378 Downstream 22bp 22528 chr14 65197573 65197573 1 + G A STAD 65197574 + 65197554 65197594 41 CAGCAGGCCAAGTTCTTTCGGGACCGGCAGGAGCTGCTACA CAGCAGGCCAAGTTCTTTCAGGACCGGCAGGAGCTGCTACA < 41bp 0.512450122206767 0.737733004788364 NA NA prediction 0.450565765163194 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197574 chr14:65197573 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_24505 0 0 0 0 2 PLEKHG3 chr14:65197517 3'AG 65197517 Downstream 57bp 22529 chr14 65197573 65197573 1 + G A STAD 65197574 + 65197554 65197594 41 CAGCAGGCCAAGTTCTTTCGGGACCGGCAGGAGCTGCTACA CAGCAGGCCAAGTTCTTTCAGGACCGGCAGGAGCTGCTACA < 41bp 0.512450122206767 0.737733004788364 NA NA prediction 0.450565765163194 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197574 chr14:65197573 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_24505 0 0 0 0 2 PLEKHG3 chr14:65197667 5'GT 65197667 Upstream 95bp 22530 chr2 95952241 95952241 1 + G T LUAD 95952242 + 95952222 95952262 41 TTCAGGACAATTCTGTGCTGGGGCAGCGGCTGCAGGAGGAG TTCAGGACAATTCTGTGCTTGGGCAGCGGCTGCAGGAGGAG < 41bp 0.37920235629191 0.725260458450969 NA NA prediction 0.450520916901938 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95952242 chr2:95952241 synonymous SNV . 0 20 hm7G_associated_SNPs_24507 0 0 0 0 2 PROM2 chr2:95952227 3'AG 95952227 Downstream 15bp 22531 chr2 95952241 95952241 1 + G T LUAD 95952242 + 95952222 95952262 41 TTCAGGACAATTCTGTGCTGGGGCAGCGGCTGCAGGAGGAG TTCAGGACAATTCTGTGCTTGGGCAGCGGCTGCAGGAGGAG < 41bp 0.37920235629191 0.725260458450969 NA NA prediction 0.450520916901938 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95952242 chr2:95952241 synonymous SNV . 0 20 hm7G_associated_SNPs_24507 0 0 0 0 2 PROM2 chr2:95952319 5'GT 95952319 Upstream 79bp 22532 chr9 90313703 90313703 1 + G T UCEC 90313704 + 90313684 90313724 41 TCGTTGCTGAAAGAGATTAGGAACAGGTGAGGGGCAGCCAC TCGTTGCTGAAAGAGATTATGAACAGGTGAGGGGCAGCCAC < 41bp 0.666662068739327 0.891897004886197 NA NA prediction 0.450469872293741 Functional Gain - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90313704 chr9:90313703 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_24511 0 0 0 0 1 DAPK1 chr9:90313709 5'GT 90313709 Upstream 7bp 22533 chr16 14328123 14328123 1 + G T LUAD 14328124 + 14328104 14328144 41 TGTGTCCTCAGCAAAGCCTGGCCCAGCACTGGTGAAGGTGG TGTGTCCTCAGCAAAGCCTTGCCCAGCACTGGTGAAGGTGG < 41bp 0.379632739002997 0.725231607594357 NA NA prediction 0.450463215188714 Functional Gain - MKL2 ENSG00000186260 CDS Human protein_coding chr16:14328124 chr16:14328123 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_24512 0 0 1 0 1 MKL2 chr16:14328140 5'GT 14328140 Upstream 18bp 22534 chr15 72642941 72642941 1 - C A COAD 72642940 - 72642920 72642960 41 CAGCACAGGATGTGAAGGAGGTCATTGAATACGCACGGCTC CAGCACAGGATGTGAAGGATGTCATTGAATACGCACGGCTC < 41bp 0.386646831856483 0.725211695960764 NA NA prediction 0.450423391921528 Functional Gain - HEXA ENSG00000213614 CDS Human protein_coding chr15:72642940 chr15:72642941 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_24518 0 0 1 0 2 HEXA chr15:72642859 5'GT 72642859 Upstream 83bp 22535 chr15 72642941 72642941 1 - C A COAD 72642940 - 72642920 72642960 41 CAGCACAGGATGTGAAGGAGGTCATTGAATACGCACGGCTC CAGCACAGGATGTGAAGGATGTCATTGAATACGCACGGCTC < 41bp 0.386646831856483 0.725211695960764 NA NA prediction 0.450423391921528 Functional Gain - HEXA ENSG00000213614 CDS Human protein_coding chr15:72642940 chr15:72642941 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_24518 0 0 1 0 2 HEXA chr15:72642991 3'AG 72642991 Downstream 51bp 22536 chr12 124071371 124071371 1 + G T SARC 124071372 + 124071352 124071392 41 ACACATTTGCTGCTCACATGGATGGAACATACAAATTTTGT ACACATTTGCTGCTCACATTGATGGAACATACAAATTTTGT < 41bp 0.656001796527648 0.881211113947076 NA NA prediction 0.450418634838855 Functional Gain - TMED2 ENSG00000086598 CDS Human protein_coding chr12:124071372 chr12:124071371 nonsynonymous SNV 0.920 1 20 hm7G_associated_SNPs_24519 0 0 1 0 1 TMED2 chr12:124071294 3'AG 124071294 Downstream 78bp 22537 chr2 108998285 108998285 1 + G T LUAD 108998286 + 108998266 108998306 41 ATGTGGAGAAAAGTAAACGGGCACCGACTCATCAACGATTT ATGTGGAGAAAAGTAAACGTGCACCGACTCATCAACGATTT < 41bp 0.667832822298952 0.893038033877864 NA NA prediction 0.450410423157822 Functional Gain - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108998286 chr2:108998285 synonymous SNV . 0 20 hm7G_associated_SNPs_24520 0 0 0 0 2 SULT1C4 chr2:108998218 3'AG 108998218 Downstream 68bp 22538 chr2 108998285 108998285 1 + G T LUAD 108998286 + 108998266 108998306 41 ATGTGGAGAAAAGTAAACGGGCACCGACTCATCAACGATTT ATGTGGAGAAAAGTAAACGTGCACCGACTCATCAACGATTT < 41bp 0.667832822298952 0.893038033877864 NA NA prediction 0.450410423157822 Functional Gain - SULT1C4 ENSG00000198075 CDS Human protein_coding chr2:108998286 chr2:108998285 synonymous SNV . 0 20 hm7G_associated_SNPs_24520 0 0 0 0 2 SULT1C4 chr2:108998343 5'GT 108998343 Upstream 59bp 22539 chr2 74438906 74438906 1 + G T UCEC 74438907 + 74438887 74438927 41 AGCAGATATGATCAAGGAAGGAGCAGCAGTCATTGATGTGG AGCAGATATGATCAAGGAATGAGCAGCAGTCATTGATGTGG < 41bp 0.661235384080326 0.886404575042103 NA NA prediction 0.450338381923553 Functional Gain - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74438907 chr2:74438906 stopgain 0.998 1 20 hm7G_associated_SNPs_24524 0 0 1 0 2 MTHFD2 chr2:74438868 3'AG 74438868 Downstream 39bp 22540 chr2 74438906 74438906 1 + G T UCEC 74438907 + 74438887 74438927 41 AGCAGATATGATCAAGGAAGGAGCAGCAGTCATTGATGTGG AGCAGATATGATCAAGGAATGAGCAGCAGTCATTGATGTGG < 41bp 0.661235384080326 0.886404575042103 NA NA prediction 0.450338381923553 Functional Gain - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74438907 chr2:74438906 stopgain 0.998 1 20 hm7G_associated_SNPs_24524 0 0 1 0 2 MTHFD2 chr2:74438993 5'GT 74438993 Upstream 88bp 22541 chr5 38425167 38425167 1 + G T SKCM 38425168 + 38425148 38425188 41 CATTTGCCTCTGTCCCCTTGGGTTTAAAGGTCGACACTGTG CATTTGCCTCTGTCCCCTTTGGTTTAAAGGTCGACACTGTG < 41bp 0.38044212018417 0.72514347177856 NA NA prediction 0.450286943557121 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38425168 chr5:38425167 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_24529 0 0 0 0 2 EGFLAM chr5:38425069 3'AG 38425069 Downstream 99bp 22542 chr5 38425167 38425167 1 + G T SKCM 38425168 + 38425148 38425188 41 CATTTGCCTCTGTCCCCTTGGGTTTAAAGGTCGACACTGTG CATTTGCCTCTGTCCCCTTTGGTTTAAAGGTCGACACTGTG < 41bp 0.38044212018417 0.72514347177856 NA NA prediction 0.450286943557121 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38425168 chr5:38425167 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_24529 0 0 0 0 2 EGFLAM chr5:38425194 5'GT 38425194 Upstream 28bp 22543 chr2 29063247 29063247 1 + G T TGCT 29063248 + 29063228 29063268 41 TATCCAGTCATACAGCAGGGGTGACAGAAAAACATTCTCAG TATCCAGTCATACAGCAGGTGTGACAGAAAAACATTCTCAG < 41bp 0.425313150261128 0.725143410307542 NA NA prediction 0.450286820615083 Functional Gain - SPDYA ENSG00000163806 CDS Human protein_coding chr2:29063248 chr2:29063247 synonymous SNV . 0 20 hm7G_associated_SNPs_24530 0 0 0 0 1 SPDYA chr2:29063335 5'GT 29063335 Upstream 89bp 22544 chr19 54139854 54139854 1 + G T SKCM 54139855 + 54139835 54139875 41 CTCTCTTCCCTTCAGGTCTGGTTCAAGAATCACAGAGCAAA CTCTCTTCCCTTCAGGTCTTGTTCAAGAATCACAGAGCAAA < 41bp 0.638678923324274 0.863816472533565 NA NA prediction 0.450275098418583 Functional Gain - DPRX ENSG00000204595 CDS Human protein_coding chr19:54139855 chr19:54139854 nonsynonymous SNV 0.964 2 20 hm7G_associated_SNPs_24532 0 0 0 0 1 DPRX chr19:54139850 3'AG 54139850 Downstream 5bp 22545 chr19 4954446 4954446 1 + G T UCEC 4954447 + 4954427 4954467 41 GGAGGAGGAGCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGA GGAGGAGGAGCAGCAGGAGTGGGGCTTCGCGTCCCCCAGGA < 41bp 0.384867888616802 0.725133201715298 NA NA prediction 0.450266403430597 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954447 chr19:4954446 . 0.000 1 20 hm7G_associated_SNPs_24533 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 85bp 22546 chr19 4954446 4954446 1 + G T UCEC 4954447 + 4954427 4954467 41 GGAGGAGGAGCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGA GGAGGAGGAGCAGCAGGAGTGGGGCTTCGCGTCCCCCAGGA < 41bp 0.384867888616802 0.725133201715298 NA NA prediction 0.450266403430597 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954447 chr19:4954446 . 0.000 1 20 hm7G_associated_SNPs_24533 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 55bp 22547 chr5 6746450 6746450 1 + G T UCEC 6746451 + 6746431 6746471 41 TATTAGAATCAAAGAAGGAGGTGCCTATATCGCCAAAGAGG TATTAGAATCAAAGAAGGATGTGCCTATATCGCCAAAGAGG < 41bp 0.395533070635929 0.725113186605418 NA NA prediction 0.450226373210835 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6746451 chr5:6746450 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24536 0 0 1 0 1 PAPD7 chr5:6746540 5'GT 6746540 Upstream 91bp 22548 chr10 43315737 43315737 1 + G T PRAD 43315738 + 43315718 43315758 41 AAGCCAGAGTTCAGTATGAGGGTTTTCGACCTGGGATGTAC AAGCCAGAGTTCAGTATGATGGTTTTCGACCTGGGATGTAC < 41bp 0.3805335275481 0.725110900061664 NA NA prediction 0.450221800123327 Functional Gain - BMS1 ENSG00000165733 CDS Human protein_coding chr10:43315738 chr10:43315737 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24537 0 0 1 0 1 BMS1 chr10:43315684 3'AG 43315684 Downstream 54bp 22549 chr1 43784998 43784998 1 + G T UCEC 43784999 + 43784979 43785019 41 GCCTTTCTCGGGGAGAGGAGGTTTATGTGAAGAAGACGATG GCCTTTCTCGGGGAGAGGATGTTTATGTGAAGAAGACGATG < 41bp 0.660387759187304 0.885476251839515 NA NA prediction 0.450176985304421 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43784999 chr1:43784998 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_24540 0 0 0 0 2 TIE1 chr1:43784906 3'AG 43784906 Downstream 93bp 22550 chr1 43784998 43784998 1 + G T UCEC 43784999 + 43784979 43785019 41 GCCTTTCTCGGGGAGAGGAGGTTTATGTGAAGAAGACGATG GCCTTTCTCGGGGAGAGGATGTTTATGTGAAGAAGACGATG < 41bp 0.660387759187304 0.885476251839515 NA NA prediction 0.450176985304421 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43784999 chr1:43784998 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_24540 0 0 0 0 2 TIE1 chr1:43785019 5'GT 43785019 Upstream 22bp 22551 chr12 10167291 10167291 1 + G T SARC 10167292 + 10167272 10167312 41 CCAGTGTACTGAAGAGGCAGGAACAAATGGCCATCAAACTG CCAGTGTACTGAAGAGGCATGAACAAATGGCCATCAAACTG < 41bp 0.657635374058839 0.882679758739227 NA NA prediction 0.450088769360777 Functional Gain - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10167292 chr12:10167291 nonsynonymous SNV 0.245 1 20 hm7G_associated_SNPs_24543 0 0 0 0 1 CLEC12B chr12:10167340 5'GT 10167340 Upstream 50bp 22552 chr8 98701330 98701330 1 + G T LIHC 98701331 + 98701311 98701351 41 AAGGAGATTCTACACTTCAGGGTGAGAGAAATTACATGTAA AAGGAGATTCTACACTTCATGGTGAGAGAAATTACATGTAA < 41bp 0.414465405911795 0.725044256910668 NA NA prediction 0.450088513821335 Functional Gain - MTDH ENSG00000147649 CDS Human protein_coding chr8:98701331 chr8:98701330 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24544 0 0 1 0 1 MTDH chr8:98701266 3'AG 98701266 Downstream 65bp 22553 chr4 166929120 166929120 1 + G T LUAD 166929121 + 166929101 166929141 41 AGTACAATTTTCTGAAGATGGAGCCTGGAGAAGTAAACTCA AGTACAATTTTCTGAAGATTGAGCCTGGAGAAGTAAACTCA < 41bp 0.394826894111362 0.725041124930179 NA NA prediction 0.450082249860357 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166929121 chr4:166929120 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24546 0 0 0 0 2 TLL1 chr4:166929095 3'AG 166929095 Downstream 26bp 22554 chr4 166929120 166929120 1 + G T LUAD 166929121 + 166929101 166929141 41 AGTACAATTTTCTGAAGATGGAGCCTGGAGAAGTAAACTCA AGTACAATTTTCTGAAGATTGAGCCTGGAGAAGTAAACTCA < 41bp 0.394826894111362 0.725041124930179 NA NA prediction 0.450082249860357 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166929121 chr4:166929120 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24546 0 0 0 0 2 TLL1 chr4:166929200 5'GT 166929200 Upstream 81bp 22555 chr20 42973925 42973925 1 + G T LUAD 42973926 + 42973906 42973946 41 GTGTGGGCATCCTCCAATCGGCTGGGCTGTGCCATCCACAC GTGTGGGCATCCTCCAATCTGCTGGGCTGTGCCATCCACAC < 41bp 0.671326134729708 0.896362538251557 NA NA prediction 0.450072807043697 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42973926 chr20:42973925 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_24547 0 0 0 0 2 R3HDML chr20:42973903 3'AG 42973903 Downstream 23bp 22556 chr20 42973925 42973925 1 + G T LUAD 42973926 + 42973906 42973946 41 GTGTGGGCATCCTCCAATCGGCTGGGCTGTGCCATCCACAC GTGTGGGCATCCTCCAATCTGCTGGGCTGTGCCATCCACAC < 41bp 0.671326134729708 0.896362538251557 NA NA prediction 0.450072807043697 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42973926 chr20:42973925 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_24547 0 0 0 0 2 R3HDML chr20:42974018 5'GT 42974018 Upstream 94bp 22557 chr2 179355493 179355493 1 + G T STAD 179355494 + 179355474 179355514 41 GAGGTGGCTGGTCGCTCTGGGGAGCTCCAAAGCATGTTTGA GAGGTGGCTGGTCGCTCTGTGGAGCTCCAAAGCATGTTTGA < 41bp 0.39177170075382 0.7250357246753 NA NA prediction 0.450071449350601 Functional Gain - PLEKHA3 ENSG00000116095 CDS Human protein_coding chr2:179355494 chr2:179355493 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_24548 0 0 0 0 1 PLEKHA3 chr2:179355541 5'GT 179355541 Upstream 49bp 22558 chr11 18723189 18723189 1 + G T HNSC 18723190 + 18723170 18723210 41 ATGCAGCCACTGGCTCTTCGGACAGGTCTGGTGATGGCAGC ATGCAGCCACTGGCTCTTCTGACAGGTCTGGTGATGGCAGC < 41bp 0.668023622195281 0.893046177701682 NA NA prediction 0.450045111012802 Functional Gain - TMEM86A ENSG00000151117 CDS Human protein_coding chr11:18723190 chr11:18723189 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_24553 0 0 0 0 1 TMEM86A chr11:18723120 3'AG 18723120 Downstream 70bp 22559 chr1 202140526 202140526 1 + G T CESC 202140527 + 202140507 202140547 41 GAGCTGAAGGTCCTAGCGGGGCCATATGACGCCTGGGCCCA GAGCTGAAGGTCCTAGCGGTGCCATATGACGCCTGGGCCCA < 41bp 0.408781465459829 0.725017689252439 NA NA prediction 0.450035378504878 Functional Gain - PTPRVP ENSG00000243323 ncRNA_exonic Human processed_transcript chr1:202140527 chr1:202140526 . . 0 20 hm7G_associated_SNPs_24555 0 0 0 0 1 PTPRVP chr1:202140567 5'GT 202140567 Upstream 42bp 22560 chr7 150499342 150499342 1 + G T UCEC 150499343 + 150499323 150499363 41 GATCTTGAGTGCAGTCCTAGGAGGATTTTTCTACATCCGCG GATCTTGAGTGCAGTCCTATGAGGATTTTTCTACATCCGCG < 41bp 0.37880900237385 0.725015372901568 NA NA prediction 0.450030745803136 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150499343 chr7:150499342 stopgain 0.008 1 20 hm7G_associated_SNPs_24556 0 0 0 0 2 TMEM176A chr7:150499303 3'AG 150499303 Downstream 40bp 22561 chr7 150499342 150499342 1 + G T UCEC 150499343 + 150499323 150499363 41 GATCTTGAGTGCAGTCCTAGGAGGATTTTTCTACATCCGCG GATCTTGAGTGCAGTCCTATGAGGATTTTTCTACATCCGCG < 41bp 0.37880900237385 0.725015372901568 NA NA prediction 0.450030745803136 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150499343 chr7:150499342 stopgain 0.008 1 20 hm7G_associated_SNPs_24556 0 0 0 0 2 TMEM176A chr7:150499413 5'GT 150499413 Upstream 72bp 22562 chr11 67075069 67075069 1 + G T OV 67075070 + 67075050 67075090 41 TGAGGCAGCTCTAGGCAGCGGCCTTGTACCGGGTGGCAGTG TGAGGCAGCTCTAGGCAGCTGCCTTGTACCGGGTGGCAGTG < 41bp 0.369572110771352 0.725015112227344 NA NA prediction 0.450030224454687 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075070 chr11:67075069 nonsynonymous SNV 0.144 3 20 hm7G_associated_SNPs_24557 0 0 1 0 1 SSH3 chr11:67075020 3'AG 67075020 Downstream 50bp 22563 chr22 44553894 44553894 1 + G T BLCA 44553895 + 44553875 44553915 41 TGTACCTGGTTCTGCTCATGGGCCTTCTGGAAGACTACTTT TGTACCTGGTTCTGCTCATTGGCCTTCTGGAAGACTACTTT < 41bp 0.372257749956083 0.725013167950435 NA NA prediction 0.450026335900869 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44553895 chr22:44553894 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_24558 0 0 1 0 2 PARVB chr22:44553862 3'AG 44553862 Downstream 33bp 22564 chr22 44553894 44553894 1 + G T BLCA 44553895 + 44553875 44553915 41 TGTACCTGGTTCTGCTCATGGGCCTTCTGGAAGACTACTTT TGTACCTGGTTCTGCTCATTGGCCTTCTGGAAGACTACTTT < 41bp 0.372257749956083 0.725013167950435 NA NA prediction 0.450026335900869 Functional Gain - PARVB ENSG00000188677 CDS Human protein_coding chr22:44553895 chr22:44553894 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_24558 0 0 1 0 2 PARVB chr22:44553963 5'GT 44553963 Upstream 70bp 22565 chrX 153033837 153033837 1 + G T SARC 153033838 + 153033818 153033858 41 GCAGCTCTCCAGGCAGATGGGCACATGATAGCCTTCCTGGG GCAGCTCTCCAGGCAGATGTGCACATGATAGCCTTCCTGGG < 41bp 0.386590530879542 0.725010367562226 NA NA prediction 0.450020735124452 Functional Gain - PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153033838 chrX:153033837 nonsynonymous SNV 0.877 3 20 hm7G_associated_SNPs_24559 0 0 0 0 1 PLXNB3 chrX:153033883 5'GT 153033883 Upstream 47bp 22566 chr1 45806997 45806997 1 + G T PAAD 45806998 + 45806978 45807018 41 CTGAGTGGGCTTGGGGACAGGAAGAGTTTGCTGAACCAGTA CTGAGTGGGCTTGGGGACATGAAGAGTTTGCTGAACCAGTA < 41bp 0.666146686559865 0.89115078911745 NA NA prediction 0.450008205115169 Functional Gain - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45806998 chr1:45806997 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24560 0 0 1 0 2 TOE1 chr1:45806975 3'AG 45806975 Downstream 23bp 22567 chr1 45806997 45806997 1 + G T PAAD 45806998 + 45806978 45807018 41 CTGAGTGGGCTTGGGGACAGGAAGAGTTTGCTGAACCAGTA CTGAGTGGGCTTGGGGACATGAAGAGTTTGCTGAACCAGTA < 41bp 0.666146686559865 0.89115078911745 NA NA prediction 0.450008205115169 Functional Gain - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45806998 chr1:45806997 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24560 0 0 1 0 2 TOE1 chr1:45807015 5'GT 45807015 Upstream 19bp 22568 chr19 34818928 34818928 1 + G A SKCM 34818929 + 34818909 34818949 41 GGCGGAAGCCCAGCAGACGGGGCGGAGGCAGACACCCCCGC GGCGGAAGCCCAGCAGACGAGGCGGAGGCAGACACCCCCGC < 41bp 0.502446711422065 0.727441201176549 NA NA prediction 0.449988979508968 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818929 chr19:34818928 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_24562 0 0 1 0 1 KIAA0355 chr19:34818895 3'AG 34818895 Downstream 34bp 22569 chr15 58471386 58471386 1 + G T UCEC 58471387 + 58471367 58471407 41 TCTTTGACTCCAGAAACTTGGGAGCCCCCAGAGGCCTAGAG TCTTTGACTCCAGAAACTTTGGAGCCCCCAGAGGCCTAGAG < 41bp 0.671278296139533 0.896266922836676 NA NA prediction 0.449977253394287 Functional Gain - AQP9 ENSG00000103569 CDS Human protein_coding chr15:58471387 chr15:58471386 nonsynonymous SNV 0.463 1 20 hm7G_associated_SNPs_24563 0 0 0 0 1 AQP9 chr15:58471327 3'AG 58471327 Downstream 60bp 22570 chr10 35426780 35426780 1 + G T COAD 35426781 + 35426761 35426801 41 ACAATGAGCAAATGTGCAAGGAAAAAATATATTAAGACAAA ACAATGAGCAAATGTGCAATGAAAAAATATATTAAGACAAA < 41bp 0.604202745168045 0.829187364831353 NA NA prediction 0.449969239326616 Functional Gain - CREM ENSG00000095794 CDS Human protein_coding chr10:35426781 chr10:35426780 nonsynonymous SNV 0.970 1 20 hm7G_associated_SNPs_24564 0 0 0 0 1 CREM chr10:35426807 5'GT 35426807 Upstream 28bp 22571 chr6 36275400 36275400 1 + G T LUSC 36275401 + 36275381 36275421 41 ACTCAAACTGGGTGAATAAGGTCTTCAAGAAGAACAAGCAA ACTCAAACTGGGTGAATAATGTCTTCAAGAAGAACAAGCAA < 41bp 0.424272761031179 0.724958194167772 NA NA prediction 0.449916388335543 Functional Gain - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36275401 chr6:36275400 nonsynonymous SNV 0.538 3 20 hm7G_associated_SNPs_24568 0 0 0 0 1 PNPLA1 chr6:36275364 3'AG 36275364 Downstream 37bp 22572 chr19 46173918 46173918 1 + G A CESC 46173919 + 46173899 46173939 41 TCTAAGGGGCAGACGGCGGGGGAGCTGTACCAGCGCTGGGA TCTAAGGGGCAGACGGCGGAGGAGCTGTACCAGCGCTGGGA < 41bp 0.519627571068786 0.744578025238544 NA NA prediction 0.449900908339517 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173919 chr19:46173918 nonsynonymous SNV 0.596 0 20 hm7G_associated_SNPs_24570 0 0 1 0 2 GIPR chr19:46173893 3'AG 46173893 Downstream 26bp 22573 chr19 46173918 46173918 1 + G A CESC 46173919 + 46173899 46173939 41 TCTAAGGGGCAGACGGCGGGGGAGCTGTACCAGCGCTGGGA TCTAAGGGGCAGACGGCGGAGGAGCTGTACCAGCGCTGGGA < 41bp 0.519627571068786 0.744578025238544 NA NA prediction 0.449900908339517 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173919 chr19:46173918 nonsynonymous SNV 0.596 0 20 hm7G_associated_SNPs_24570 0 0 1 0 2 GIPR chr19:46173992 5'GT 46173992 Upstream 75bp 22574 chr19 18305866 18305866 1 + G T STAD 18305867 + 18305847 18305887 41 ACGGCCTGACGCTGGGCTGGGACACGTACCTGTCCTACTTG ACGGCCTGACGCTGGGCTGTGACACGTACCTGTCCTACTTG < 41bp 0.376579125023986 0.724950132465881 NA NA prediction 0.449900264931762 Functional Gain - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305867 chr19:18305866 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24571 0 0 1 0 2 MPV17L2 chr19:18305768 3'AG 18305768 Downstream 99bp 22575 chr19 18305866 18305866 1 + G T STAD 18305867 + 18305847 18305887 41 ACGGCCTGACGCTGGGCTGGGACACGTACCTGTCCTACTTG ACGGCCTGACGCTGGGCTGTGACACGTACCTGTCCTACTTG < 41bp 0.376579125023986 0.724950132465881 NA NA prediction 0.449900264931762 Functional Gain - MPV17L2 ENSG00000254858 CDS Human protein_coding chr19:18305867 chr19:18305866 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24571 0 0 1 0 2 MPV17L2 chr19:18305896 5'GT 18305896 Upstream 31bp 22576 chr21 27141330 27141330 1 + G T LUSC 27141331 + 27141311 27141351 41 GAAGATATTATTACGATGGGGACATGATTTGTAAAGTTCAA GAAGATATTATTACGATGGTGACATGATTTGTAAAGTTCAA < 41bp 0.43059814039395 0.724933442611981 NA NA prediction 0.449866885223962 Functional Gain - GABPA ENSG00000154727 CDS Human protein_coding chr21:27141331 chr21:27141330 synonymous SNV . 0 20 hm7G_associated_SNPs_24572 0 0 1 0 1 GABPA chr21:27141315 3'AG 27141315 Downstream 16bp 22577 chr3 184717545 184717545 1 + G T STAD 184717546 + 184717526 184717566 41 ATGCACTGTGGAATTTGAGGGCCAAACAAGATGGACATGCT ATGCACTGTGGAATTTGAGTGCCAAACAAGATGGACATGCT < 41bp 0.401828512496737 0.724925085454497 NA NA prediction 0.449850170908994 Functional Gain - VPS8 ENSG00000156931 CDS Human protein_coding chr3:184717546 chr3:184717545 nonsynonymous SNV 0.934 3 20 hm7G_associated_SNPs_24573 0 0 1 0 1 VPS8 chr3:184717484 3'AG 184717484 Downstream 62bp 22578 chr1 26153204 26153204 1 + G T COAD 26153205 + 26153185 26153225 41 CTGCGTGGGTCCGAGGAGAGGCTTCTGGCCCTGAAGAAGCC CTGCGTGGGTCCGAGGAGATGCTTCTGGCCCTGAAGAAGCC < 41bp 0.664183733133752 0.889100755368883 NA NA prediction 0.449834044470262 Functional Gain - MTFR1L ENSG00000117640 CDS Human protein_coding chr1:26153205 chr1:26153204 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24574 0 0 1 0 1 MTFR1L chr1:26153106 3'AG 26153106 Downstream 99bp 22579 chr2 75108870 75108870 1 + G T COAD 75108871 + 75108851 75108891 41 CTTGGCCTTGGACCTTGGAGGAACAAATTTCCGGGTCCTGC CTTGGCCTTGGACCTTGGATGAACAAATTTCCGGGTCCTGC < 41bp 0.384661143003884 0.724911381549924 NA NA prediction 0.449822763099848 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75108871 chr2:75108870 stopgain 0.999 1 20 hm7G_associated_SNPs_24576 0 0 1 0 1 HK2 chr2:75108838 3'AG 75108838 Downstream 33bp 22580 chr18 56819825 56819825 1 + G T LUSC 56819826 + 56819806 56819846 41 TGTTCCTCACAAATTTCCGGGAAGACCCAATCAGAGCTGGT TGTTCCTCACAAATTTCCGTGAAGACCCAATCAGAGCTGGT < 41bp 0.666460257521843 0.891369362289885 NA NA prediction 0.449818209536083 Functional Gain - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56819826 chr18:56819825 synonymous SNV . 0 20 hm7G_associated_SNPs_24577 0 0 1 0 2 SEC11C chr18:56819768 3'AG 56819768 Downstream 58bp 22581 chr18 56819825 56819825 1 + G T LUSC 56819826 + 56819806 56819846 41 TGTTCCTCACAAATTTCCGGGAAGACCCAATCAGAGCTGGT TGTTCCTCACAAATTTCCGTGAAGACCCAATCAGAGCTGGT < 41bp 0.666460257521843 0.891369362289885 NA NA prediction 0.449818209536083 Functional Gain - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56819826 chr18:56819825 synonymous SNV . 0 20 hm7G_associated_SNPs_24577 0 0 1 0 2 SEC11C chr18:56819917 5'GT 56819917 Upstream 93bp 22582 chr12 48528770 48528770 1 + G T UCEC 48528771 + 48528751 48528791 41 ACATCATCATTGTGGCTGAGGGTGCAATTGACAAGAATGGA ACATCATCATTGTGGCTGATGGTGCAATTGACAAGAATGGA < 41bp 0.588048863280969 0.812957356654166 NA NA prediction 0.449816986746394 Functional Gain - PFKM ENSG00000152556 CDS Human protein_coding chr12:48528771 chr12:48528770 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_24578 0 0 1 0 2 PFKM chr12:48528726 3'AG 48528726 Downstream 45bp 22583 chr12 48528770 48528770 1 + G T UCEC 48528771 + 48528751 48528791 41 ACATCATCATTGTGGCTGAGGGTGCAATTGACAAGAATGGA ACATCATCATTGTGGCTGATGGTGCAATTGACAAGAATGGA < 41bp 0.588048863280969 0.812957356654166 NA NA prediction 0.449816986746394 Functional Gain - PFKM ENSG00000152556 CDS Human protein_coding chr12:48528771 chr12:48528770 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_24578 0 0 1 0 2 PFKM chr12:48528821 5'GT 48528821 Upstream 52bp 22584 chr1 26570718 26570718 1 + G T COAD 26570719 + 26570699 26570739 41 GGCAGACCCCAGTTATCTCGGAGCCCTTTCGGAGCCGCTTC GGCAGACCCCAGTTATCTCTGAGCCCTTTCGGAGCCGCTTC < 41bp 0.370693348236912 0.724905370629881 NA NA prediction 0.449810741259762 Functional Gain - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26570719 chr1:26570718 synonymous SNV . 0 20 hm7G_associated_SNPs_24579 0 0 1 0 1 CEP85 chr1:26570657 3'AG 26570657 Downstream 62bp 22585 chr2 113404718 113404718 1 + G T LUAD 113404719 + 113404699 113404739 41 TCAAGGGCTGCTGATGGCCGGCTCAGTCAGTGCTATGTTTG TCAAGGGCTGCTGATGGCCTGCTCAGTCAGTGCTATGTTTG < 41bp 0.668218303898196 0.893094524678637 NA NA prediction 0.449752441560882 Functional Gain - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113404719 chr2:113404718 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_24585 0 0 1 0 1 SLC20A1 chr2:113404739 5'GT 113404739 Upstream 22bp 22586 chr8 143558812 143558812 1 + G A UCEC 143558813 + 143558793 143558833 41 ACCTGTGGCCGTGGCTTTCGGGATCGCACGCGCACCTGCAG ACCTGTGGCCGTGGCTTTCAGGATCGCACGCGCACCTGCAG < 41bp 0.510182593552786 0.73505021894281 NA NA prediction 0.449735250780047 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558813 chr8:143558812 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_24586 0 0 0 0 2 ADGRB1 chr8:143558746 3'AG 143558746 Downstream 67bp 22587 chr8 143558812 143558812 1 + G A UCEC 143558813 + 143558793 143558833 41 ACCTGTGGCCGTGGCTTTCGGGATCGCACGCGCACCTGCAG ACCTGTGGCCGTGGCTTTCAGGATCGCACGCGCACCTGCAG < 41bp 0.510182593552786 0.73505021894281 NA NA prediction 0.449735250780047 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558813 chr8:143558812 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_24586 0 0 0 0 2 ADGRB1 chr8:143558910 5'GT 143558910 Upstream 99bp 22588 chr12 100904912 100904912 1 + G T LUSC 100904913 + 100904893 100904933 41 TAATGCACTGACCTGTGAGGGGTGTAAAGGTAAGCATCTTT TAATGCACTGACCTGTGAGTGGTGTAAAGGTAAGCATCTTT < 41bp 0.396157470433586 0.724864870143853 NA NA prediction 0.449729740287706 Functional Gain - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100904913 chr12:100904912 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_24588 0 0 1 0 1 NR1H4 chr12:100904921 5'GT 100904921 Upstream 10bp 22589 chr2 101598698 101598698 1 + G T LUSC 101598699 + 101598679 101598719 41 GCTCCACCTTGAAGTTTTCGGCACAGTTCAGCATGTTCCAG GCTCCACCTTGAAGTTTTCTGCACAGTTCAGCATGTTCCAG < 41bp 0.38077088432897 0.724861088667937 NA NA prediction 0.449722177335875 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598699 chr2:101598698 synonymous SNV . 0 20 hm7G_associated_SNPs_24589 0 0 0 0 1 NPAS2 chr2:101598693 3'AG 101598693 Downstream 6bp 22590 chr16 28843844 28843844 1 + G T STAD 28843845 + 28843825 28843865 41 CTCTCTACCAAGGAACCTGGGAGAACTCTGGAGCCCCAGGA CTCTCTACCAAGGAACCTGTGAGAACTCTGGAGCCCCAGGA < 41bp 0.379372836851367 0.724859403333405 NA NA prediction 0.449718806666811 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28843845 chr16:28843844 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_24590 0 0 1 0 2 ATXN2L chr16:28843817 3'AG 28843817 Downstream 28bp 22591 chr16 28843844 28843844 1 + G T STAD 28843845 + 28843825 28843865 41 CTCTCTACCAAGGAACCTGGGAGAACTCTGGAGCCCCAGGA CTCTCTACCAAGGAACCTGTGAGAACTCTGGAGCCCCAGGA < 41bp 0.379372836851367 0.724859403333405 NA NA prediction 0.449718806666811 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28843845 chr16:28843844 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_24590 0 0 1 0 2 ATXN2L chr16:28843888 5'GT 28843888 Upstream 45bp 22592 chr12 53670431 53670431 1 + G T THCA 53670432 + 53670412 53670452 41 GAGACAGCCTCAGTGGCTGGGACCCGGAGACCCTGGCCCTC GAGACAGCCTCAGTGGCTGTGACCCGGAGACCCTGGCCCTC < 41bp 0.369983074737517 0.724850697009165 NA NA prediction 0.44970139401833 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53670432 chr12:53670431 nonsynonymous SNV 0.943 1 20 hm7G_associated_SNPs_24593 0 0 1 0 1 ESPL1 chr12:53670404 3'AG 53670404 Downstream 28bp 22593 chr1 17597382 17597382 1 + G T ESCA 17597383 + 17597363 17597403 41 TGCCCCTGCAGGATTTCTCGGCATCCCCTATCTTCACTGAC TGCCCCTGCAGGATTTCTCTGCATCCCCTATCTTCACTGAC < 41bp 0.378532301406833 0.724829048119553 NA NA prediction 0.449658096239107 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597383 chr1:17597382 synonymous SNV . 0 20 hm7G_associated_SNPs_24595 0 0 0 0 2 PADI3 chr1:17597374 3'AG 17597374 Downstream 9bp 22594 chr1 17597382 17597382 1 + G T ESCA 17597383 + 17597363 17597403 41 TGCCCCTGCAGGATTTCTCGGCATCCCCTATCTTCACTGAC TGCCCCTGCAGGATTTCTCTGCATCCCCTATCTTCACTGAC < 41bp 0.378532301406833 0.724829048119553 NA NA prediction 0.449658096239107 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17597383 chr1:17597382 synonymous SNV . 0 20 hm7G_associated_SNPs_24595 0 0 0 0 2 PADI3 chr1:17597477 5'GT 17597477 Upstream 96bp 22595 chr16 31283276 31283276 1 + G T LUAD 31283277 + 31283257 31283297 41 GCCAATAACGCAGCTGCTTGGGCGGACACACACGGCCACGG GCCAATAACGCAGCTGCTTTGGCGGACACACACGGCCACGG < 41bp 0.366786451860997 0.724825753868305 NA NA prediction 0.44965150773661 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31283277 chr16:31283276 nonsynonymous SNV 0.037 3 20 hm7G_associated_SNPs_24597 0 0 0 0 1 ITGAM chr16:31283313 5'GT 31283313 Upstream 38bp 22596 chr11 6291552 6291552 1 + G A LIHC 6291553 + 6291533 6291573 41 CATCGCTGGCCCAGTGCGCGGGTCCGCCAGACCTGGTGAGC CATCGCTGGCCCAGTGCGCAGGTCCGCCAGACCTGGTGAGC < 41bp 0.522859713484634 0.747676734711767 NA NA prediction 0.449634042454266 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291553 chr11:6291552 nonsynonymous SNV 0.798 1 20 hm7G_associated_SNPs_24598 0 0 0 0 1 CCKBR chr11:6291567 5'GT 6291567 Upstream 16bp 22597 chr9 134165813 134165813 1 + G T UCEC 134165814 + 134165794 134165834 41 GCACACTGGCCGGCCAGGAGGTGCTCATGAATCTGCTCCTG GCACACTGGCCGGCCAGGATGTGCTCATGAATCTGCTCCTG < 41bp 0.400447196067322 0.724793020244347 NA NA prediction 0.449586040488694 Functional Gain - PLPP7 ENSG00000160539 CDS Human protein_coding chr9:134165814 chr9:134165813 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24601 0 0 0 0 1 PLPP7 chr9:134165835 5'GT 134165835 Upstream 23bp 22598 chr9 101570276 101570276 1 + G T LIHC 101570277 + 101570257 101570297 41 CTGCAGGAGGAGAGCGTGCGGCTGCACCAGATTAACATCTA CTGCAGGAGGAGAGCGTGCTGCTGCACCAGATTAACATCTA < 41bp 0.664905021111552 0.889666876661033 NA NA prediction 0.449523711098962 Functional Gain - GALNT12 ENSG00000119514 CDS Human protein_coding chr9:101570277 chr9:101570276 nonsynonymous SNV 0.581 0 20 hm7G_associated_SNPs_24607 0 0 1 0 1 GALNT12 chr9:101570351 5'GT 101570351 Upstream 76bp 22599 chr20 2082767 2082767 1 + G A rs6106228 2082768 + 2082748 2082788 41 CCGGAGCGGACCATCCCCAGGCAGGGGCTCCAGGGGGGAAA CCGGAGCGGACCATCCCCAAGCAGGGGCTCCAGGGGGGAAA < 41bp 0.507443646893346 0.732184185519962 NA NA prediction 0.449481077253232 Functional Gain - STK35 ENSG00000125834 CDS Human protein_coding chr20:2082768 chr20:2082767 synonymous SNV . 0 20 hm7G_associated_SNPs_24609 0 0 0 0 1 STK35 chr20:2082821 5'GT 2082821 Upstream 55bp 22600 chr11 120349010 120349010 1 + G T OV 120349011 + 120348991 120349031 41 ATACAGATGGGACACTAAAGGAAGTTGGAGAAGATTATCAA ATACAGATGGGACACTAAATGAAGTTGGAGAAGATTATCAA < 41bp 0.397036801854046 0.724740450063102 NA NA prediction 0.449480900126204 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120349011 chr11:120349010 nonsynonymous SNV 0.531 1 20 hm7G_associated_SNPs_24610 0 0 1 0 1 ARHGEF12 chr11:120349098 5'GT 120349098 Upstream 89bp 22601 chr12 110352309 110352309 1 + G T COAD 110352310 + 110352290 110352330 41 AGAACCGACGGGCACAAGAGGAATCCCTGAAACACAGGGAG AGAACCGACGGGCACAAGATGAATCCCTGAAACACAGGGAG < 41bp 0.673152414358298 0.897869721352164 NA NA prediction 0.449434613987733 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110352310 chr12:110352309 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24613 0 0 1 0 1 TCHP chr12:110352247 3'AG 110352247 Downstream 63bp 22602 chr3 16254171 16254171 1 + G T UCEC 16254172 + 16254152 16254192 41 ATTCCCCCCTCGACCAGGAGGCCACCCTGAGGAACAGGGTT ATTCCCCCCTCGACCAGGATGCCACCCTGAGGAACAGGGTT < 41bp 0.373732089495272 0.724712670355256 NA NA prediction 0.449425340710513 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16254172 chr3:16254171 nonsynonymous SNV 0.039 0 20 hm7G_associated_SNPs_24614 0 0 0 0 2 GALNT15 chr3:16254076 3'AG 16254076 Downstream 96bp 22603 chr3 16254171 16254171 1 + G T UCEC 16254172 + 16254152 16254192 41 ATTCCCCCCTCGACCAGGAGGCCACCCTGAGGAACAGGGTT ATTCCCCCCTCGACCAGGATGCCACCCTGAGGAACAGGGTT < 41bp 0.373732089495272 0.724712670355256 NA NA prediction 0.449425340710513 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16254172 chr3:16254171 nonsynonymous SNV 0.039 0 20 hm7G_associated_SNPs_24614 0 0 0 0 2 GALNT15 chr3:16254270 5'GT 16254270 Upstream 100bp 22604 chr6 34789564 34789564 1 + G T SARC 34789565 + 34789545 34789585 41 ACCTGGTTAGCCATCACTCGGGTCTACTGCAACAGGGCCTC ACCTGGTTAGCCATCACTCTGGTCTACTGCAACAGGGCCTC < 41bp 0.373969340356743 0.724668995865147 NA NA prediction 0.449337991730293 Functional Gain - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34789565 chr6:34789564 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_24618 0 0 1 0 1 UHRF1BP1 chr6:34789592 5'GT 34789592 Upstream 29bp 22605 chr17 28507994 28507994 1 + G T SARC 28507995 + 28507975 28508015 41 CCTATTAAATCAAGCAGTTGGTGAAGAGGAAGTACCTAAAT CCTATTAAATCAAGCAGTTTGTGAAGAGGAAGTACCTAAAT < 41bp 0.659337445863526 0.88400395347515 NA NA prediction 0.449333015223247 Functional Gain - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28507995 chr17:28507994 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24619 0 0 1 0 2 NSRP1 chr17:28507926 3'AG 28507926 Downstream 69bp 22606 chr17 28507994 28507994 1 + G T SARC 28507995 + 28507975 28508015 41 CCTATTAAATCAAGCAGTTGGTGAAGAGGAAGTACCTAAAT CCTATTAAATCAAGCAGTTTGTGAAGAGGAAGTACCTAAAT < 41bp 0.659337445863526 0.88400395347515 NA NA prediction 0.449333015223247 Functional Gain - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28507995 chr17:28507994 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24619 0 0 1 0 2 NSRP1 chr17:28508034 5'GT 28508034 Upstream 41bp 22607 chr19 11998761 11998761 1 + G T HNSC 11998762 + 11998742 11998782 41 CCCTGCTGTAGTCACAGGAGGTGTAGAGAGGACCCCGGGAC CCCTGCTGTAGTCACAGGATGTGTAGAGAGGACCCCGGGAC < 41bp 0.650069859051892 0.874726741097532 NA NA prediction 0.449313764091281 Functional Gain - ZNF69 ENSG00000198429 CDS Human protein_coding chr19:11998762 chr19:11998761 nonsynonymous SNV 0.133 0 20 hm7G_associated_SNPs_24620 0 0 1 0 1 ZNF69 chr19:11998801 5'GT 11998801 Upstream 41bp 22608 chr19 48685811 48685811 1 + G A rs565428109 48685812 + 48685792 48685832 41 AGCTGACCCACTCACACCCGGCCTGCCCGCTGGAGTTCGCC AGCTGACCCACTCACACCCAGCCTGCCCGCTGGAGTTCGCC < 41bp 0.503376612791697 0.728000658062511 NA NA prediction 0.449248090541628 Functional Gain - C19orf68 ENSG00000185453 CDS Human protein_coding chr19:48685812 chr19:48685811 synonymous SNV . 0 20 hm7G_associated_SNPs_24622 0 0 0 0 1 C19orf68 chr19:48685712 3'AG 48685712 Downstream 100bp 22609 chr19 3532511 3532511 1 + G A UCEC 3532512 + 3532492 3532532 41 CTGGTCCCCACATCAGCACGGGCTGCTGGCCTCGGGGGGCG CTGGTCCCCACATCAGCACAGGCTGCTGGCCTCGGGGGGCG < 41bp 0.517582417725326 0.742153104253035 NA NA prediction 0.449141373055418 Functional Gain - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3532512 chr19:3532511 nonsynonymous SNV 0.313 4 20 hm7G_associated_SNPs_24627 0 0 1 0 1 FZR1 chr19:3532415 3'AG 3532415 Downstream 97bp 22610 chr7 150773165 150773165 1 - C A rs2303940 150773164 - 150773144 150773184 41 AGGCAGCTGTGGACATGACGGCCCAGAGCAGGGCCAGGCAG AGGCAGCTGTGGACATGACTGCCCAGAGCAGGGCCAGGCAG < 41bp 0.662905238111518 0.887464227071388 NA NA prediction 0.449117977919739 Functional Gain - SLC4A2 ENSG00000164889 CDS Human antisense chr7:150773164 chr7:150773165 synonymous SNV . 0 20 hm7G_associated_SNPs_24628 0 0 0 0 1 SLC4A2 chr7:150773083 5'GT 150773083 Upstream 83bp 22611 chr8 69046430 69046430 1 + G T LUSC 69046431 + 69046411 69046451 41 AAAATGAGATGGAAACTTGGGAAGCCAGCAGGAGGTGGCTG AAAATGAGATGGAAACTTGTGAAGCCAGCAGGAGGTGGCTG < 41bp 0.662288752967354 0.886840224247994 NA NA prediction 0.449102942561281 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69046431 chr8:69046430 nonsynonymous SNV 0.785 1 20 hm7G_associated_SNPs_24630 0 0 0 0 1 PREX2 chr8:69046511 5'GT 69046511 Upstream 82bp 22612 chr16 58075578 58075578 1 + G A rs200994796 58075579 + 58075559 58075599 41 CCCACTGTGACGCCACGGCGGCCAGGCCGGCCTGACCACCG CCCACTGTGACGCCACGGCAGCCAGGCCGGCCTGACCACCG < 41bp 0.521392859631866 0.745941729162702 NA NA prediction 0.449097739061671 Functional Gain - MMP15 ENSG00000102996 CDS Human protein_coding chr16:58075579 chr16:58075578 nonsynonymous SNV 0.894 0 20 hm7G_associated_SNPs_24631 0 0 0 0 1 MMP15 chr16:58075521 3'AG 58075521 Downstream 58bp 22613 chrX 56296671 56296671 1 + G T LUSC 56296672 + 56296652 56296692 41 CTTGACTTGAAGAGAAGACGGATTCACCAATGTGACTTTGC CTTGACTTGAAGAGAAGACTGATTCACCAATGTGACTTTGC < 41bp 0.39206765914412 0.724537706269309 NA NA prediction 0.449075412538618 Functional Gain - KLF8 ENSG00000102349 CDS Human protein_coding chrX:56296672 chrX:56296671 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24632 0 0 0 1 2 KLF8 chrX:56296615 3'AG 56296615 Downstream 57bp 22614 chrX 56296671 56296671 1 + G T LUSC 56296672 + 56296652 56296692 41 CTTGACTTGAAGAGAAGACGGATTCACCAATGTGACTTTGC CTTGACTTGAAGAGAAGACTGATTCACCAATGTGACTTTGC < 41bp 0.39206765914412 0.724537706269309 NA NA prediction 0.449075412538618 Functional Gain - KLF8 ENSG00000102349 CDS Human protein_coding chrX:56296672 chrX:56296671 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24632 0 0 0 1 2 KLF8 chrX:56296754 5'GT 56296754 Upstream 84bp 22615 chr3 190967857 190967857 1 + G T SARC 190967858 + 190967838 190967878 41 TCATCCAAAAAGGCGATTTGGTATCCCCATGGATCGGATTG TCATCCAAAAAGGCGATTTTGTATCCCCATGGATCGGATTG < 41bp 0.646278086920777 0.87080948542052 NA NA prediction 0.449062796999486 Functional Gain - OSTN ENSG00000188729 CDS Human protein_coding chr3:190967858 chr3:190967857 nonsynonymous SNV 0.926 4 20 hm7G_associated_SNPs_24634 0 0 1 0 1 OSTN chr3:190967826 3'AG 190967826 Downstream 32bp 22616 chr22 41621830 41621830 1 + G T rs150457090 41621831 + 41621811 41621851 41 GATACCTGATGATCTGTGTGGACGGGGGGCCCTCCACAGAT GATACCTGATGATCTGTGTTGACGGGGGGCCCTCCACAGAT < 41bp 0.380087588534396 0.724508656980503 NA NA prediction 0.449017313961006 Functional Gain - L3MBTL2 ENSG00000100395 CDS Human protein_coding chr22:41621831 chr22:41621830 synonymous SNV . 0 20 hm7G_associated_SNPs_24636 0 0 0 0 1 L3MBTL2 chr22:41621798 3'AG 41621798 Downstream 33bp 22617 chr3 38519939 38519939 1 + G T LUSC 38519940 + 38519920 38519960 41 CTGGAGATCAAGGCTCGGGGGCGCTTTGGCTGTGTCTGGAA CTGGAGATCAAGGCTCGGGTGCGCTTTGGCTGTGTCTGGAA < 41bp 0.487219989478156 0.724506000984829 NA NA prediction 0.449012001969658 Functional Gain - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38519940 chr3:38519939 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_24637 0 0 1 0 2 ACVR2B chr3:38519866 3'AG 38519866 Downstream 74bp 22618 chr3 38519939 38519939 1 + G T LUSC 38519940 + 38519920 38519960 41 CTGGAGATCAAGGCTCGGGGGCGCTTTGGCTGTGTCTGGAA CTGGAGATCAAGGCTCGGGTGCGCTTTGGCTGTGTCTGGAA < 41bp 0.487219989478156 0.724506000984829 NA NA prediction 0.449012001969658 Functional Gain - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38519940 chr3:38519939 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_24637 0 0 1 0 2 ACVR2B chr3:38520009 5'GT 38520009 Upstream 71bp 22619 chr5 125939354 125939354 1 + G T SKCM 125939355 + 125939335 125939375 41 ATCGAGCTGTTGAAAGTGTGGATTCAAGTGAAGAAAGTTTT ATCGAGCTGTTGAAAGTGTTGATTCAAGTGAAGAAAGTTTT < 41bp 0.658327443897281 0.882831841820896 NA NA prediction 0.44900879584723 Functional Gain - PHAX ENSG00000164902 CDS Human protein_coding chr5:125939355 chr5:125939354 synonymous SNV . 0 20 hm7G_associated_SNPs_24638 0 0 1 0 1 PHAX chr5:125939262 3'AG 125939262 Downstream 93bp 22620 chr15 51975549 51975549 1 + G T GBM 51975550 + 51975530 51975570 41 TTGATAATAAGTTGAATGTGGAAGATGTTGATTCAACCAAG TTGATAATAAGTTGAATGTTGAAGATGTTGATTCAACCAAG < 41bp 0.657291272002186 0.881775318766031 NA NA prediction 0.448968093527691 Functional Gain - SCG3 ENSG00000104112 CDS Human protein_coding chr15:51975550 chr15:51975549 synonymous SNV . 0 20 hm7G_associated_SNPs_24642 0 0 0 0 1 SCG3 chr15:51975631 5'GT 51975631 Upstream 83bp 22621 chr18 32462098 32462098 1 + G T LUAD 32462099 + 32462079 32462119 41 TATGAAAATGACTCTGTCCGGCAGCTGGAGAATGAGCTCCA TATGAAAATGACTCTGTCCTGCAGCTGGAGAATGAGCTCCA < 41bp 0.619619561343591 0.844103247134877 NA NA prediction 0.448967371582572 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32462099 chr18:32462098 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_24643 0 0 1 0 1 DTNA chr18:32462165 5'GT 32462165 Upstream 68bp 22622 chr16 31332879 31332879 1 + G T UCEC 31332880 + 31332860 31332900 41 TAATGATCAGGTGGTGAAAGGCAAGGAAGCCGGAGAGGTCA TAATGATCAGGTGGTGAAATGCAAGGAAGCCGGAGAGGTCA < 41bp 0.670002741182709 0.89447021055228 NA NA prediction 0.448934938739141 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31332880 chr16:31332879 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_24645 0 0 0 0 2 ITGAM chr16:31332785 3'AG 31332785 Downstream 95bp 22623 chr16 31332879 31332879 1 + G T UCEC 31332880 + 31332860 31332900 41 TAATGATCAGGTGGTGAAAGGCAAGGAAGCCGGAGAGGTCA TAATGATCAGGTGGTGAAATGCAAGGAAGCCGGAGAGGTCA < 41bp 0.670002741182709 0.89447021055228 NA NA prediction 0.448934938739141 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31332880 chr16:31332879 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_24645 0 0 0 0 2 ITGAM chr16:31332948 5'GT 31332948 Upstream 70bp 22624 chr1 156845419 156845419 1 + G A LUAD 156845420 + 156845400 156845440 41 CAAAGGCTCTGGGCTCCAAGGCCACATCATCGAGAACCCAC CAAAGGCTCTGGGCTCCAAAGCCACATCATCGAGAACCCAC < 41bp 0.507066884777036 0.731520203033392 NA NA prediction 0.448906636512711 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845420 chr1:156845419 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_24647 0 0 1 0 1 NTRK1 chr1:156845458 5'GT 156845458 Upstream 40bp 22625 chrX 72673480 72673480 1 + G T LUAD 72673481 + 72673461 72673501 41 CAGAGCTGGCAGTTAACCTGGGCCTTTCCGAGAGACAGGTA CAGAGCTGGCAGTTAACCTTGGCCTTTCCGAGAGACAGGTA < 41bp 0.677937759930736 0.902374360507332 NA NA prediction 0.448873201153192 Functional Gain - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72673481 chrX:72673480 synonymous SNV . 0 20 hm7G_associated_SNPs_24649 0 0 0 0 1 CDX4 chrX:72673498 5'GT 72673498 Upstream 19bp 22626 chr11 22291872 22291872 1 + G T LUSC 22291873 + 22291853 22291893 41 AACAGCTTGGCTTTGAATTGGTGGAGACGCCGAAAAGCTCG AACAGCTTGGCTTTGAATTTGTGGAGACGCCGAAAAGCTCG < 41bp 0.411229451425494 0.724401682400418 NA NA prediction 0.448803364800836 Functional Gain - ANO5 ENSG00000171714 CDS Human protein_coding chr11:22291873 chr11:22291872 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_24651 0 0 0 0 1 ANO5 chr11:22291858 3'AG 22291858 Downstream 15bp 22627 chr9 115171288 115171288 1 + G T UCEC 115171289 + 115171269 115171309 41 GATGAACGTGAACACCAGAGGCACCTACCTTGCGTAAGTTT GATGAACGTGAACACCAGATGCACCTACCTTGCGTAAGTTT < 41bp 0.38921735510477 0.724399175635453 NA NA prediction 0.448798351270905 Functional Gain - HSDL2 ENSG00000119471 CDS Human protein_coding chr9:115171289 chr9:115171288 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24652 0 0 1 0 1 HSDL2 chr9:115171301 5'GT 115171301 Upstream 14bp 22628 chr2 223559222 223559222 1 + G T STAD 223559223 + 223559203 223559243 41 ACTCTGTTCATCCGCCAGCGGAAAGGATTTGTTAAAATTGC ACTCTGTTCATCCGCCAGCTGAAAGGATTTGTTAAAATTGC < 41bp 0.658749938020818 0.883140609199685 NA NA prediction 0.448781342357735 Functional Gain - MOGAT1 ENSG00000124003 CDS Human protein_coding chr2:223559223 chr2:223559222 nonsynonymous SNV 0.935 4 20 hm7G_associated_SNPs_24655 0 0 0 0 1 MOGAT1 chr2:223559255 5'GT 223559255 Upstream 34bp 22629 chr8 8875812 8875812 1 + G T UCEC 8875813 + 8875793 8875833 41 TTTTATATCCTCAGGATCAGGTAGACAGAGCTGATACCTTC TTTTATATCCTCAGGATCATGTAGACAGAGCTGATACCTTC < 41bp 0.650971827482292 0.87535186349978 NA NA prediction 0.448760072034976 Functional Gain - ERI1 ENSG00000104626 CDS Human protein_coding chr8:8875813 chr8:8875812 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24657 0 0 1 0 1 ERI1 chr8:8875807 3'AG 8875807 Downstream 6bp 22630 chr4 155490382 155490382 1 + G T LUSC 155490383 + 155490363 155490403 41 GGTAGTGTTGACTTTGGCAGGAAATGGGATCCATATAAACA GGTAGTGTTGACTTTGGCATGAAATGGGATCCATATAAACA < 41bp 0.661383297559636 0.885743408097538 NA NA prediction 0.448720221075805 Functional Gain - FGB ENSG00000171564 CDS Human protein_coding chr4:155490383 chr4:155490382 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_24660 0 0 1 0 2 FGB chr4:155490334 3'AG 155490334 Downstream 49bp 22631 chr4 155490382 155490382 1 + G T LUSC 155490383 + 155490363 155490403 41 GGTAGTGTTGACTTTGGCAGGAAATGGGATCCATATAAACA GGTAGTGTTGACTTTGGCATGAAATGGGATCCATATAAACA < 41bp 0.661383297559636 0.885743408097538 NA NA prediction 0.448720221075805 Functional Gain - FGB ENSG00000171564 CDS Human protein_coding chr4:155490383 chr4:155490382 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_24660 0 0 1 0 2 FGB chr4:155490459 5'GT 155490459 Upstream 78bp 22632 chr2 33745691 33745691 1 + G T THCA 33745692 + 33745672 33745712 41 CGTATGACTGAGGAATTTCGGGAAGTAGCTAGTCAACTAGG CGTATGACTGAGGAATTTCTGGAAGTAGCTAGTCAACTAGG < 41bp 0.390409401497044 0.724358679682716 NA NA prediction 0.448717359365431 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33745692 chr2:33745691 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_24661 0 0 0 0 2 RASGRP3 chr2:33745620 3'AG 33745620 Downstream 72bp 22633 chr2 33745691 33745691 1 + G T THCA 33745692 + 33745672 33745712 41 CGTATGACTGAGGAATTTCGGGAAGTAGCTAGTCAACTAGG CGTATGACTGAGGAATTTCTGGAAGTAGCTAGTCAACTAGG < 41bp 0.390409401497044 0.724358679682716 NA NA prediction 0.448717359365431 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33745692 chr2:33745691 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_24661 0 0 0 0 2 RASGRP3 chr2:33745751 5'GT 33745751 Upstream 61bp 22634 chr2 102957144 102957144 1 + G T GBM 102957145 + 102957125 102957165 41 GAATTGTCAGGCTCTTCAAGGATCAAGGTACAGGGCGCACA GAATTGTCAGGCTCTTCAATGATCAAGGTACAGGGCGCACA < 41bp 0.663209575970863 0.887558251494131 NA NA prediction 0.448697351046535 Functional Gain - IL1RL1 ENSG00000115602 CDS Human protein_coding chr2:102957145 chr2:102957144 stopgain 0.887 0 20 hm7G_associated_SNPs_24663 0 0 0 0 1 IL1RL1 chr2:102957126 3'AG 102957126 Downstream 19bp 22635 chr2 219483388 219483388 1 + G T LUAD 219483389 + 219483369 219483409 41 GGAGCTCCCCCTGGAGCAGGGCTTCACCATTGTCTTCCATG GGAGCTCCCCCTGGAGCAGTGCTTCACCATTGTCTTCCATG < 41bp 0.366603152051772 0.724341972510403 NA NA prediction 0.448683945020806 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219483389 chr2:219483388 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_24664 0 0 0 0 1 PLCD4 chr2:219483302 3'AG 219483302 Downstream 87bp 22636 chr1 236918429 236918429 1 + G T BRCA 236918430 + 236918410 236918450 41 AGAACAACATCGACAAGCTGGAGGGAGACCATCAGCTCATC AGAACAACATCGACAAGCTTGAGGGAGACCATCAGCTCATC < 41bp 0.387645943652373 0.724340195574993 NA NA prediction 0.448680391149986 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236918430 chr1:236918429 synonymous SNV . 0 20 hm7G_associated_SNPs_24666 0 0 0 0 1 ACTN2 chr1:236918498 5'GT 236918498 Upstream 70bp 22637 chr5 113829163 113829163 1 + G T LUAD 113829164 + 113829144 113829184 41 CAAACACTTTGGTGGACTTGGCAAAGGTAAGCCTGAGGTGC CAAACACTTTGGTGGACTTTGCAAAGGTAAGCCTGAGGTGC < 41bp 0.669397135791938 0.893696472392986 NA NA prediction 0.448598673202097 Functional Gain - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113829164 chr5:113829163 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_24670 0 0 0 2 2 KCNN2 chr5:113829100 3'AG 113829100 Downstream 64bp 22638 chr5 113829163 113829163 1 + G T LUAD 113829164 + 113829144 113829184 41 CAAACACTTTGGTGGACTTGGCAAAGGTAAGCCTGAGGTGC CAAACACTTTGGTGGACTTTGCAAAGGTAAGCCTGAGGTGC < 41bp 0.669397135791938 0.893696472392986 NA NA prediction 0.448598673202097 Functional Gain - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113829164 chr5:113829163 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_24670 0 0 0 2 2 KCNN2 chr5:113829169 5'GT 113829169 Upstream 7bp 22639 chr16 1825265 1825265 1 + G A rs150181920 1825266 + 1825246 1825286 41 TCTGGCAGAGGCCAAGCTCGGGCAGGGCAGGCCCCATGGGG TCTGGCAGAGGCCAAGCTCAGGCAGGGCAGGCCCCATGGGG < 41bp 0.531690651985962 0.75598935548488 NA NA prediction 0.448597406997836 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825266 chr16:1825265 synonymous SNV . 0 20 hm7G_associated_SNPs_24671 0 0 1 0 1 EME2 chr16:1825240 3'AG 1825240 Downstream 26bp 22640 chr12 6422908 6422908 1 + G A SKCM 6422909 + 6422889 6422929 41 AGCCCGAGAAGAGGCACGGGGGCCATGTGGGGGCTGGCCTG AGCCCGAGAAGAGGCACGGAGGCCATGTGGGGGCTGGCCTG < 41bp 0.527748599929447 0.752034165827819 NA NA prediction 0.448571131796744 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6422909 chr12:6422908 synonymous SNV . 0 20 hm7G_associated_SNPs_24672 0 0 1 0 1 PLEKHG6 chr12:6422950 5'GT 6422950 Upstream 43bp 22641 chr16 66976614 66976614 1 + G T UCEC 66976615 + 66976595 66976635 41 AGCTGGCTCAAGAACATCAGGCCACCGCACATGAAGGCAGA AGCTGGCTCAAGAACATCATGCCACCGCACATGAAGGCAGA < 41bp 0.681009772851184 0.905291973400396 NA NA prediction 0.448564401098423 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66976615 chr16:66976614 nonsynonymous SNV 0.199 3 20 hm7G_associated_SNPs_24674 0 0 1 0 3 CES2 chr16:66976551 3'AG 66976551 Downstream 64bp 22642 chr16 66976614 66976614 1 + G T UCEC 66976615 + 66976595 66976635 41 AGCTGGCTCAAGAACATCAGGCCACCGCACATGAAGGCAGA AGCTGGCTCAAGAACATCATGCCACCGCACATGAAGGCAGA < 41bp 0.681009772851184 0.905291973400396 NA NA prediction 0.448564401098423 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66976615 chr16:66976614 nonsynonymous SNV 0.199 3 20 hm7G_associated_SNPs_24674 0 0 1 0 3 CES2 chr16:66976640 5'GT 66976640 Upstream 27bp 22643 chr16 66976614 66976614 1 + G T UCEC 66976615 + 66976595 66976635 41 AGCTGGCTCAAGAACATCAGGCCACCGCACATGAAGGCAGA AGCTGGCTCAAGAACATCATGCCACCGCACATGAAGGCAGA < 41bp 0.681009772851184 0.905291973400396 NA NA prediction 0.448564401098423 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66976615 chr16:66976614 nonsynonymous SNV 0.199 3 20 hm7G_associated_SNPs_24674 0 0 1 0 3 CES2 chr16:66976688 5'GT 66976688 Upstream 75bp 22644 chr16 538915 538915 1 + G T LUAD 538916 + 538896 538936 41 GGAGCACTTTGAGGACTACGGTGAAGGCAGTGAGGCGGAGC GGAGCACTTTGAGGACTACTGTGAAGGCAGTGAGGCGGAGC < 41bp 0.677814691149185 0.90207672822461 NA NA prediction 0.448524074150849 Functional Gain - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:538916 chr16:538915 nonsynonymous SNV 0.901 3 20 hm7G_associated_SNPs_24675 0 0 1 0 2 RAB11FIP3 chr16:538851 3'AG 538851 Downstream 65bp 22645 chr16 538915 538915 1 + G T LUAD 538916 + 538896 538936 41 GGAGCACTTTGAGGACTACGGTGAAGGCAGTGAGGCGGAGC GGAGCACTTTGAGGACTACTGTGAAGGCAGTGAGGCGGAGC < 41bp 0.677814691149185 0.90207672822461 NA NA prediction 0.448524074150849 Functional Gain - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:538916 chr16:538915 nonsynonymous SNV 0.901 3 20 hm7G_associated_SNPs_24675 0 0 1 0 2 RAB11FIP3 chr16:539000 5'GT 539000 Upstream 86bp 22646 chr1 53073967 53073967 1 + G T BRCA 53073968 + 53073948 53073988 41 GAGCCCACCTGGAACTTCTGGAAGTACCTAGTAGCCCCAGA GAGCCCACCTGGAACTTCTTGAAGTACCTAGTAGCCCCAGA < 41bp 0.662603315919105 0.886852041289393 NA NA prediction 0.448497450740574 Functional Gain - GPX7 ENSG00000116157 CDS Human protein_coding chr1:53073968 chr1:53073967 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_24678 0 0 0 0 1 GPX7 chr1:53073934 3'AG 53073934 Downstream 34bp 22647 chr4 84525851 84525851 1 + G T UCEC 84525852 + 84525832 84525872 41 TAAAGAGAGCAAAGGTGAAGGACATCTTTAAGGAAGAGCAG TAAAGAGAGCAAAGGTGAATGACATCTTTAAGGAAGAGCAG < 41bp 0.656800303033573 0.881045666281478 NA NA prediction 0.448490726495809 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84525852 chr4:84525851 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_24679 0 0 0 0 1 GPAT3 chr4:84525821 3'AG 84525821 Downstream 31bp 22648 chr7 148311163 148311163 1 + G T LUAD 148311164 + 148311144 148311184 41 CACACCAAAACATGAACCGGGGGATGGAATTTATTGCTCCT CACACCAAAACATGAACCGTGGGATGGAATTTATTGCTCCT < 41bp 0.388529929511585 0.724227542574242 NA NA prediction 0.448455085148484 Functional Gain - C7orf33 ENSG00000170279 CDS Human protein_coding chr7:148311164 chr7:148311163 synonymous SNV . 0 20 hm7G_associated_SNPs_24680 0 0 0 0 1 C7orf33 chr7:148311134 3'AG 148311134 Downstream 30bp 22649 chr16 89254572 89254572 1 + G T UCEC 89254573 + 89254553 89254593 41 CGCCTGGAAGTGGAGGACAGGGACCTGCCAGGCTCCCCAAA CGCCTGGAAGTGGAGGACATGGACCTGCCAGGCTCCCCAAA < 41bp 0.680190016325513 0.904414273805149 NA NA prediction 0.448448514959273 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89254573 chr16:89254572 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_24681 0 0 0 0 1 CDH15 chr16:89254508 3'AG 89254508 Downstream 65bp 22650 chr6 57246849 57246849 1 + G T KIRP 57246850 + 57246830 57246870 41 TCCCTTTTGCTGATGCTCTGGATTTGTTTCGAGGAAGGAAA TCCCTTTTGCTGATGCTCTTGATTTGTTTCGAGGAAGGAAA < 41bp 0.407611005980893 0.724193381123773 NA NA prediction 0.448386762247546 Functional Gain - PRIM2 ENSG00000146143 CDS Human protein_coding chr6:57246850 chr6:57246849 synonymous SNV . 0 20 hm7G_associated_SNPs_24682 0 0 1 0 1 PRIM2 chr6:57246829 3'AG 57246829 Downstream 21bp 22651 chr17 15905258 15905258 1 + G T SARC 15905259 + 15905239 15905279 41 TGAAAGATGAGCCAGAAGAGGCTGAGTTAATTTTGCATGAC TGAAAGATGAGCCAGAAGATGCTGAGTTAATTTTGCATGAC < 41bp 0.665991376551252 0.890184055037351 NA NA prediction 0.448385356972198 Functional Gain - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15905259 chr17:15905258 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24683 0 0 1 0 2 TTC19 chr17:15905229 3'AG 15905229 Downstream 30bp 22652 chr17 15905258 15905258 1 + G T SARC 15905259 + 15905239 15905279 41 TGAAAGATGAGCCAGAAGAGGCTGAGTTAATTTTGCATGAC TGAAAGATGAGCCAGAAGATGCTGAGTTAATTTTGCATGAC < 41bp 0.665991376551252 0.890184055037351 NA NA prediction 0.448385356972198 Functional Gain - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15905259 chr17:15905258 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24683 0 0 1 0 2 TTC19 chr17:15905339 5'GT 15905339 Upstream 82bp 22653 chr9 101787255 101787255 1 + G T COAD 101787256 + 101787236 101787276 41 TGGATCTCCTGGAGAGGATGGACCTGCTGGTGAACCTGGGC TGGATCTCCTGGAGAGGATTGACCTGCTGGTGAACCTGGGC < 41bp 0.373057999865355 0.724137544151827 NA NA prediction 0.448275088303654 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101787256 chr9:101787255 stopgain 0.972 1 20 hm7G_associated_SNPs_24687 0 0 0 0 1 COL15A1 chr9:101787281 5'GT 101787281 Upstream 27bp 22654 chr4 4393311 4393311 1 + G T UCEC 4393312 + 4393292 4393332 41 ACGGAGGGTGTCACCGAGAGGTTTAAGGTGAGTGGTCCTGT ACGGAGGGTGTCACCGAGATGTTTAAGGTGAGTGGTCCTGT < 41bp 0.667977929054448 0.892107209269752 NA NA prediction 0.448258560430608 Functional Gain - NSG1 ENSG00000168824 CDS Human protein_coding chr4:4393312 chr4:4393311 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24689 0 0 0 0 1 NSG1 chr4:4393318 5'GT 4393318 Upstream 8bp 22655 chr16 3165872 3165872 1 + G T UCEC 3165873 + 3165853 3165893 41 GTGCTTTCCCGAGAGGGGAGGACCAGAGACCGGCAGATGGC GTGCTTTCCCGAGAGGGGATGACCAGAGACCGGCAGATGGC < 41bp 0.673350778833606 0.89746525671335 NA NA prediction 0.448228955759489 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3165873 chr16:3165872 nonsynonymous SNV 0.815 2 20 hm7G_associated_SNPs_24691 0 0 0 0 2 ZNF205 chr16:3165830 3'AG 3165830 Downstream 43bp 22656 chr16 3165872 3165872 1 + G T UCEC 3165873 + 3165853 3165893 41 GTGCTTTCCCGAGAGGGGAGGACCAGAGACCGGCAGATGGC GTGCTTTCCCGAGAGGGGATGACCAGAGACCGGCAGATGGC < 41bp 0.673350778833606 0.89746525671335 NA NA prediction 0.448228955759489 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3165873 chr16:3165872 nonsynonymous SNV 0.815 2 20 hm7G_associated_SNPs_24691 0 0 0 0 2 ZNF205 chr16:3165921 5'GT 3165921 Upstream 50bp 22657 chr11 47281376 47281376 1 + G T UCEC 47281377 + 47281357 47281397 41 TGTGGAAGCCAGGCGCACAGGATGCAAGCAGCCAGGCCCAG TGTGGAAGCCAGGCGCACATGATGCAAGCAGCCAGGCCCAG < 41bp 0.679967643765433 0.904078806261528 NA NA prediction 0.44822232499219 Functional Gain - NR1H3 ENSG00000025434 CDS Human protein_coding chr11:47281377 chr11:47281376 nonsynonymous SNV 0.032 0 20 hm7G_associated_SNPs_24693 0 0 1 0 1 NR1H3 chr11:47281342 3'AG 47281342 Downstream 35bp 22658 chr4 3449886 3449886 1 + G A rs28468427 3449887 + 3449867 3449907 41 ACTCCAGCTCCCTGCGGGAGGCCCTGGTCCCCCTGGTCGCC ACTCCAGCTCCCTGCGGGAAGCCCTGGTCCCCCTGGTCGCC < 41bp 0.521597795206818 0.745685920197149 NA NA prediction 0.448176249980661 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3449887 chr4:3449886 synonymous SNV . 0 20 hm7G_associated_SNPs_24697 0 0 1 0 1 HGFAC chr4:3449855 3'AG 3449855 Downstream 32bp 22659 chr2 241814597 241814597 1 + G A CESC 241814598 + 241814578 241814618 41 AAGTGGCTGGCCAACTTCTGGGGCTGTGACGACCAGCCCAG AAGTGGCTGGCCAACTTCTAGGGCTGTGACGACCAGCCCAG < 41bp 0.496571073878101 0.724083129333534 NA NA prediction 0.448166258667067 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241814598 chr2:241814597 stopgain 0.774 1 20 hm7G_associated_SNPs_24698 1 0 1 0 2 AGXT chr2:241814526 3'AG 241814526 Downstream 72bp 22660 chr2 241814597 241814597 1 + G A CESC 241814598 + 241814578 241814618 41 AAGTGGCTGGCCAACTTCTGGGGCTGTGACGACCAGCCCAG AAGTGGCTGGCCAACTTCTAGGGCTGTGACGACCAGCCCAG < 41bp 0.496571073878101 0.724083129333534 NA NA prediction 0.448166258667067 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241814598 chr2:241814597 stopgain 0.774 1 20 hm7G_associated_SNPs_24698 1 0 1 0 2 AGXT chr2:241814621 5'GT 241814621 Upstream 25bp 22661 chrX 110979947 110979947 1 + G T LUSC 110979948 + 110979928 110979968 41 TTCCACACTTACAGATGATGGGAAATATTGCAGCAGTTGCA TTCCACACTTACAGATGATTGGAAATATTGCAGCAGTTGCA < 41bp 0.409008938816409 0.724078643688058 NA NA prediction 0.448157287376116 Functional Gain - ALG13 ENSG00000101901 CDS Human protein_coding chrX:110979948 chrX:110979947 nonsynonymous SNV 0.879 0 20 hm7G_associated_SNPs_24699 0 0 1 0 1 ALG13 chrX:110979942 3'AG 110979942 Downstream 6bp 22662 chr21 45095037 45095037 1 + G T LUSC 45095038 + 45095018 45095058 41 GAACTCTCCAAAGTCGGGGGGAAGGAGGTAAGCAGCTGCCG GAACTCTCCAAAGTCGGGGTGAAGGAGGTAAGCAGCTGCCG < 41bp 0.672321398781537 0.896377748142143 NA NA prediction 0.448112698721213 Functional Gain - RRP1B ENSG00000160208 CDS Human protein_coding chr21:45095038 chr21:45095037 nonsynonymous SNV 0.568 3 20 hm7G_associated_SNPs_24702 0 0 1 0 1 RRP1B chr21:45095044 5'GT 45095044 Upstream 8bp 22663 chr4 155665926 155665926 1 + G T LUAD 155665927 + 155665907 155665947 41 GAGGGCTGAAAAGCTGCTGGGCTTTACCCCCTACAGCCTGC GAGGGCTGAAAAGCTGCTGTGCTTTACCCCCTACAGCCTGC < 41bp 0.384778661970072 0.724019155833486 NA NA prediction 0.448038311666971 Functional Gain - LRAT ENSG00000121207 CDS Human protein_coding chr4:155665927 chr4:155665926 nonsynonymous SNV 0.014 4 20 hm7G_associated_SNPs_24706 0 0 0 0 1 LRAT chr4:155666018 5'GT 155666018 Upstream 93bp 22664 chr17 57465697 57465697 1 + G T STAD 57465698 + 57465678 57465718 41 TGCATTTCAGTCATTCCAAGGAAGTCAAGGACGAGCATACC TGCATTTCAGTCATTCCAATGAAGTCAAGGACGAGCATACC < 41bp 0.666200302914489 0.890218526970576 NA NA prediction 0.448036448112173 Functional Gain - YPEL2 ENSG00000175155 CDS Human protein_coding chr17:57465698 chr17:57465697 stopgain 1.000 1 20 hm7G_associated_SNPs_24707 0 0 1 0 1 YPEL2 chr17:57465688 3'AG 57465688 Downstream 10bp 22665 chr1 223947030 223947030 1 + G T LUSC 223947031 + 223947011 223947051 41 TTCCTGACGAATCGCGCCAGGGAGCGCTCAGACACCTTCAT TTCCTGACGAATCGCGCCATGGAGCGCTCAGACACCTTCAT < 41bp 0.387355527476525 0.724014486928576 NA NA prediction 0.448028973857153 Functional Gain - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223947031 chr1:223947030 nonsynonymous SNV 0.365 1 20 hm7G_associated_SNPs_24708 0 0 1 0 1 CAPN2 chr1:223946972 3'AG 223946972 Downstream 59bp 22666 chr20 42679998 42679998 1 + G A SKCM 42679999 + 42679979 42680019 41 TATGACTCGGGCCGGCCCGGGCCCCTGCTGGGTCGCCCGGC TATGACTCGGGCCGGCCCGAGCCCCTGCTGGGTCGCCCGGC < 41bp 0.506351373531797 0.730359067658723 NA NA prediction 0.448015388253852 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42679999 chr20:42679998 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_24710 0 0 0 0 1 TOX2 chr20:42679946 3'AG 42679946 Downstream 53bp 22667 chr2 27279599 27279599 1 + G T UCEC 27279600 + 27279580 27279620 41 TGCCCGAGACCGTAGAGATGGCCAGTCTAAAGAGGGAAGCG TGCCCGAGACCGTAGAGATTGCCAGTCTAAAGAGGGAAGCG < 41bp 0.674528592498927 0.898532817524799 NA NA prediction 0.448008450051744 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27279600 chr2:27279599 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24712 0 0 1 2 1 AGBL5 chr2:27279660 5'GT 27279660 Upstream 62bp 22668 chr7 11151056 11151056 1 + G T UCEC 11151057 + 11151037 11151077 41 TCCTAAACAGACAGGCTACGGATGGATATGTCAGGAATGTG TCCTAAACAGACAGGCTACTGATGGATATGTCAGGAATGTG < 41bp 0.413724696478401 0.723981912791191 NA NA prediction 0.447963825582381 Functional Gain - PHF14;NONE ENSG00000106443 CDS Human protein_coding chr7:11151057 chr7:11151056 stopgain . 0 20 hm7G_associated_SNPs_24715 0 0 1 0 2 PHF14;NONE chr7:11150977 3'AG 11150977 Downstream 80bp 22669 chr7 11151056 11151056 1 + G T UCEC 11151057 + 11151037 11151077 41 TCCTAAACAGACAGGCTACGGATGGATATGTCAGGAATGTG TCCTAAACAGACAGGCTACTGATGGATATGTCAGGAATGTG < 41bp 0.413724696478401 0.723981912791191 NA NA prediction 0.447963825582381 Functional Gain - PHF14;NONE ENSG00000106443 CDS Human protein_coding chr7:11151057 chr7:11151056 stopgain . 0 20 hm7G_associated_SNPs_24715 0 0 1 0 2 PHF14;NONE chr7:11151094 5'GT 11151094 Upstream 39bp 22670 chr22 51044141 51044141 1 + G A LGG 51044142 + 51044122 51044162 41 CTACGCCCATGCGGTGCCCGGCCCTGCCAAGGACCTGCTGG CTACGCCCATGCGGTGCCCAGCCCTGCCAAGGACCTGCTGG < 41bp 0.524973480242891 0.748954432128416 NA NA prediction 0.447961903771049 Functional Gain - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044142 chr22:51044141 nonsynonymous SNV 0.342 2 20 hm7G_associated_SNPs_24716 0 0 1 0 1 MAPK8IP2 chr22:51044162 5'GT 51044162 Upstream 22bp 22671 chr11 73957246 73957246 1 + G T READ 73957247 + 73957227 73957267 41 TTCCTAAATTGCTGCTCTTGGCTGGTAAGTGTATATGTGCA TTCCTAAATTGCTGCTCTTTGCTGGTAAGTGTATATGTGCA < 41bp 0.665354957760281 0.889335763804411 NA NA prediction 0.44796161208826 Functional Gain - PPME1 ENSG00000214517 CDS Human protein_coding chr11:73957247 chr11:73957246 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_24717 0 0 1 0 1 PPME1 chr11:73957250 5'GT 73957250 Upstream 5bp 22672 chr18 39617691 39617691 1 + G T LUAD 39617692 + 39617672 39617712 41 CACAGTTGTTTTTTAAGACGGAAGATGGAGGCAAATATCCA CACAGTTGTTTTTTAAGACTGAAGATGGAGGCAAATATCCA < 41bp 0.656051926589098 0.880024181671481 NA NA prediction 0.447944510164767 Functional Gain - PIK3C3 ENSG00000078142 CDS Human protein_coding chr18:39617692 chr18:39617691 synonymous SNV . 0 20 hm7G_associated_SNPs_24718 0 0 1 0 1 PIK3C3 chr18:39617784 5'GT 39617784 Upstream 94bp 22673 chr10 101439024 101439024 1 + G T ESCA 101439025 + 101439005 101439045 41 TTGCCTGACTTAGGTATTTGGCTCGAGTAGGGGAGCTTGAA TTGCCTGACTTAGGTATTTTGCTCGAGTAGGGGAGCTTGAA < 41bp 0.656202583519576 0.880173600629272 NA NA prediction 0.447942034219391 Functional Gain - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101439025 chr10:101439024 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24719 0 0 0 0 1 ENTPD7 chr10:101439018 3'AG 101439018 Downstream 7bp 22674 chr9 112642901 112642901 1 + G T LUSC 112642902 + 112642882 112642922 41 GCCGAAGAGGAGGAAGCCAGGAGGCGGCAGTCTGAAGAGGA GCCGAAGAGGAGGAAGCCATGAGGCGGCAGTCTGAAGAGGA < 41bp 0.39094436825111 0.723966187052176 NA NA prediction 0.447932374104353 Functional Gain - PALM2;PALM2-AKAP2 ENSG00000157654;ENSG00000241978;ENSG00000243444 CDS Human other chr9:112642902 chr9:112642901 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_24720 0 0 0 0 2 PALM2;PALM2-AKAP2 chr9:112642831 3'AG 112642831 Downstream 71bp 22675 chr9 112642901 112642901 1 + G T LUSC 112642902 + 112642882 112642922 41 GCCGAAGAGGAGGAAGCCAGGAGGCGGCAGTCTGAAGAGGA GCCGAAGAGGAGGAAGCCATGAGGCGGCAGTCTGAAGAGGA < 41bp 0.39094436825111 0.723966187052176 NA NA prediction 0.447932374104353 Functional Gain - PALM2;PALM2-AKAP2 ENSG00000157654;ENSG00000241978;ENSG00000243444 CDS Human other chr9:112642902 chr9:112642901 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_24720 0 0 0 0 2 PALM2;PALM2-AKAP2 chr9:112642961 5'GT 112642961 Upstream 61bp 22676 chr3 128973842 128973842 1 + G A BRCA 128973843 + 128973823 128973863 41 CACAGAGCACCATGCTGCAGGCTATTGAGCGCTACATGAAA CACAGAGCACCATGCTGCAAGCTATTGAGCGCTACATGAAA < 41bp 0.502225084932664 0.726188264185394 NA NA prediction 0.447926358505459 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973843 chr3:128973842 synonymous SNV . 0 20 hm7G_associated_SNPs_24721 0 0 1 0 2 COPG1 chr3:128973828 3'AG 128973828 Downstream 15bp 22677 chr3 128973842 128973842 1 + G A BRCA 128973843 + 128973823 128973863 41 CACAGAGCACCATGCTGCAGGCTATTGAGCGCTACATGAAA CACAGAGCACCATGCTGCAAGCTATTGAGCGCTACATGAAA < 41bp 0.502225084932664 0.726188264185394 NA NA prediction 0.447926358505459 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973843 chr3:128973842 synonymous SNV . 0 20 hm7G_associated_SNPs_24721 0 0 1 0 2 COPG1 chr3:128973920 5'GT 128973920 Upstream 79bp 22678 chr19 46511486 46511486 1 + G T LUAD 46511487 + 46511467 46511507 41 GTCACTGAAGGAGGAACTGGGCCGCCTGCAAGGGCTGGATG GTCACTGAAGGAGGAACTGTGCCGCCTGCAAGGGCTGGATG < 41bp 0.682042713652108 0.905978476229439 NA NA prediction 0.447871525154663 Functional Gain - CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46511487 chr19:46511486 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_24722 0 0 0 0 2 CCDC61 chr19:46511398 3'AG 46511398 Downstream 89bp 22679 chr19 46511486 46511486 1 + G T LUAD 46511487 + 46511467 46511507 41 GTCACTGAAGGAGGAACTGGGCCGCCTGCAAGGGCTGGATG GTCACTGAAGGAGGAACTGTGCCGCCTGCAAGGGCTGGATG < 41bp 0.682042713652108 0.905978476229439 NA NA prediction 0.447871525154663 Functional Gain - CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46511487 chr19:46511486 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_24722 0 0 0 0 2 CCDC61 chr19:46511559 5'GT 46511559 Upstream 74bp 22680 chr5 128363000 128363000 1 + G T ESCA 128363001 + 128362981 128363021 41 GACAATTTCCTTTATTTTTGGGACCGTACTGGAGACACTTT GACAATTTCCTTTATTTTTTGGACCGTACTGGAGACACTTT < 41bp 0.65647630540616 0.880393668511399 NA NA prediction 0.447834726210478 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128363001 chr5:128363000 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_24723 0 0 0 0 1 SLC27A6 chr5:128363024 5'GT 128363024 Upstream 25bp 22681 chr1 17296381 17296381 1 + G T LUAD 17296382 + 17296362 17296402 41 GAGGCGAGGTGGCTGACCTGGAACTGCAGCGGGTGGAGGCC GAGGCGAGGTGGCTGACCTTGAACTGCAGCGGGTGGAGGCC < 41bp 0.369078124060012 0.723903368998301 NA NA prediction 0.447806737996603 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17296382 chr1:17296381 synonymous SNV . 0 20 hm7G_associated_SNPs_24725 0 0 1 0 1 CROCC chr1:17296429 5'GT 17296429 Upstream 49bp 22682 chr1 168549392 168549392 1 + G T UCEC 168549393 + 168549373 168549413 41 TCAAGACCTACACCATCACGGAAGGCTCCTTGAGAGCAGTA TCAAGACCTACACCATCACTGAAGGCTCCTTGAGAGCAGTA < 41bp 0.66833077210331 0.892232413364555 NA NA prediction 0.447803282522488 Functional Gain - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549393 chr1:168549392 synonymous SNV . 0 20 hm7G_associated_SNPs_24726 0 0 0 0 2 XCL1 chr1:168549301 3'AG 168549301 Downstream 92bp 22683 chr1 168549392 168549392 1 + G T UCEC 168549393 + 168549373 168549413 41 TCAAGACCTACACCATCACGGAAGGCTCCTTGAGAGCAGTA TCAAGACCTACACCATCACTGAAGGCTCCTTGAGAGCAGTA < 41bp 0.66833077210331 0.892232413364555 NA NA prediction 0.447803282522488 Functional Gain - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549393 chr1:168549392 synonymous SNV . 0 20 hm7G_associated_SNPs_24726 0 0 0 0 2 XCL1 chr1:168549415 5'GT 168549415 Upstream 24bp 22684 chr17 60655911 60655911 1 + G T UCEC 60655912 + 60655892 60655932 41 CATATCAGGGAACTAAAAAGGATACATAATGAAGATAATTC CATATCAGGGAACTAAAAATGATACATAATGAAGATAATTC < 41bp 0.394467856186547 0.723897411150886 NA NA prediction 0.447794822301773 Functional Gain - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60655912 chr17:60655911 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24728 0 0 1 0 2 TLK2 chr17:60655838 3'AG 60655838 Downstream 74bp 22685 chr17 60655911 60655911 1 + G T UCEC 60655912 + 60655892 60655932 41 CATATCAGGGAACTAAAAAGGATACATAATGAAGATAATTC CATATCAGGGAACTAAAAATGATACATAATGAAGATAATTC < 41bp 0.394467856186547 0.723897411150886 NA NA prediction 0.447794822301773 Functional Gain - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60655912 chr17:60655911 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24728 0 0 1 0 2 TLK2 chr17:60655935 5'GT 60655935 Upstream 25bp 22686 chr12 113534588 113534588 1 + G T LUSC 113534589 + 113534569 113534609 41 TCGGCACGTCCAACACCACGGGCGAGTCGGACACCGTGGTG TCGGCACGTCCAACACCACTGGCGAGTCGGACACCGTGGTG < 41bp 0.671594080523622 0.895481406464306 NA NA prediction 0.447774651881369 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113534589 chr12:113534588 synonymous SNV . 0 20 hm7G_associated_SNPs_24730 0 0 0 0 1 DTX1 chr12:113534520 3'AG 113534520 Downstream 69bp 22687 chr2 103321059 103321059 1 + G T UCEC 103321060 + 103321040 103321080 41 CAAGTGAGAGACAAGCCAAGGAGATTCTGATTCGCCGGCGA CAAGTGAGAGACAAGCCAATGAGATTCTGATTCGCCGGCGA < 41bp 0.392894371892683 0.723876238853978 NA NA prediction 0.447752477707956 Functional Gain - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103321060 chr2:103321059 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_24731 0 0 0 0 1 SLC9A2 chr2:103321003 3'AG 103321003 Downstream 57bp 22688 chrX 149905864 149905864 1 + G T COAD 149905865 + 149905845 149905885 41 TTACTACAGGACCATTAAAGGATTTGAAACTCTCGTAGAAA TTACTACAGGACCATTAAATGATTTGAAACTCTCGTAGAAA < 41bp 0.405122979617186 0.723869663103031 NA NA prediction 0.447739326206062 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149905865 chrX:149905864 stopgain 0.994 1 20 hm7G_associated_SNPs_24732 0 0 1 0 1 MTMR1 chrX:149905920 5'GT 149905920 Upstream 57bp 22689 chr7 128482660 128482660 1 + G A KIRP 128482661 + 128482641 128482681 41 GAGGGCAGCCACCCCGAGCGGGTAAAGGTGTACGGCCCCGG GAGGGCAGCCACCCCGAGCAGGTAAAGGTGTACGGCCCCGG < 41bp 0.51450291465936 0.73836980171202 NA NA prediction 0.44773377410532 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128482661 chr7:128482660 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_24735 0 0 1 0 2 FLNC chr7:128482629 3'AG 128482629 Downstream 32bp 22690 chr7 128482660 128482660 1 + G A KIRP 128482661 + 128482641 128482681 41 GAGGGCAGCCACCCCGAGCGGGTAAAGGTGTACGGCCCCGG GAGGGCAGCCACCCCGAGCAGGTAAAGGTGTACGGCCCCGG < 41bp 0.51450291465936 0.73836980171202 NA NA prediction 0.44773377410532 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128482661 chr7:128482660 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_24735 0 0 1 0 2 FLNC chr7:128482752 5'GT 128482752 Upstream 93bp 22691 chr20 61303108 61303108 1 + G T LUAD 61303109 + 61303089 61303129 41 CCTCTCTCCCCAGGTGCTGGGCGTCCTCTTCTTTGCCATAG CCTCTCTCCCCAGGTGCTGTGCGTCCTCTTCTTTGCCATAG < 41bp 0.392769765920364 0.7238659279599 NA NA prediction 0.4477318559198 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61303109 chr20:61303108 nonsynonymous SNV 0.827 4 20 hm7G_associated_SNPs_24737 0 0 1 0 1 SLCO4A1 chr20:61303102 3'AG 61303102 Downstream 7bp 22692 chr22 45204251 45204251 1 + G T OV 45204252 + 45204232 45204272 41 CATCGTCTATTTCCACTACGGGCTGAACAGCCGGAACAAGC CATCGTCTATTTCCACTACTGGCTGAACAGCCGGAACAAGC < 41bp 0.374143116103937 0.723852821668313 NA NA prediction 0.447705643336626 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45204252 chr22:45204251 nonsynonymous SNV 0.780 3 20 hm7G_associated_SNPs_24739 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45204187 3'AG 45204187 Downstream 65bp 22693 chr22 45204251 45204251 1 + G T OV 45204252 + 45204232 45204272 41 CATCGTCTATTTCCACTACGGGCTGAACAGCCGGAACAAGC CATCGTCTATTTCCACTACTGGCTGAACAGCCGGAACAAGC < 41bp 0.374143116103937 0.723852821668313 NA NA prediction 0.447705643336626 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45204252 chr22:45204251 nonsynonymous SNV 0.780 3 20 hm7G_associated_SNPs_24739 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45204318 5'GT 45204318 Upstream 68bp 22694 chr17 58740381 58740381 1 + G T UCEC 58740382 + 58740362 58740402 41 GAGGAGGATCCATGGCCAAGGGTGAATTCTAAGGACCATAT GAGGAGGATCCATGGCCAATGGTGAATTCTAAGGACCATAT < 41bp 0.400941197771526 0.723848207418687 NA NA prediction 0.447696414837375 Functional Gain - PPM1D ENSG00000170836 CDS Human protein_coding chr17:58740382 chr17:58740381 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_24740 0 0 1 0 1 PPM1D chr17:58740356 3'AG 58740356 Downstream 26bp 22695 chr4 130030679 130030679 1 + G T UCEC 130030680 + 130030660 130030700 41 AGGAGAGACAAAATGGGAAGGCAAAGCTTATCTCCCTTGGA AGGAGAGACAAAATGGGAATGCAAAGCTTATCTCCCTTGGA < 41bp 0.665340414193994 0.88918409767269 NA NA prediction 0.447687366957393 Functional Gain - C4orf33 ENSG00000151470 CDS Human protein_coding chr4:130030680 chr4:130030679 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_24742 0 0 0 0 1 C4orf33 chr4:130030628 3'AG 130030628 Downstream 52bp 22696 chr19 51227216 51227216 1 + G A UCEC 51227217 + 51227197 51227237 41 GGGGGATGAGAATCCTGCCGGAACTGTTGAGGGAAAAGAGG GGGGGATGAGAATCCTGCCAGAACTGTTGAGGGAAAAGAGG < 41bp 0.501216230652312 0.725058937677612 NA NA prediction 0.447685414050601 Functional Gain - CLEC11A ENSG00000105472 CDS Human protein_coding chr19:51227217 chr19:51227216 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_24743 0 0 0 0 1 CLEC11A chr19:51227162 3'AG 51227162 Downstream 55bp 22697 chr9 139793320 139793320 1 + G T PRAD 139793321 + 139793301 139793341 41 TGCAGAAACGTCCTCCGCAGGCCCTTCCAGGCGCAGTGTGG TGCAGAAACGTCCTCCGCATGCCCTTCCAGGCGCAGTGTGG < 41bp 0.366867466317925 0.723840794041829 NA NA prediction 0.447681588083658 Functional Gain - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139793321 chr9:139793320 nonsynonymous SNV 0.670 5 20 hm7G_associated_SNPs_24744 0 0 1 0 2 TRAF2 chr9:139793347 5'GT 139793347 Upstream 28bp 22698 chr9 139793320 139793320 1 + G T PRAD 139793321 + 139793301 139793341 41 TGCAGAAACGTCCTCCGCAGGCCCTTCCAGGCGCAGTGTGG TGCAGAAACGTCCTCCGCATGCCCTTCCAGGCGCAGTGTGG < 41bp 0.366867466317925 0.723840794041829 NA NA prediction 0.447681588083658 Functional Gain - TRAF2 ENSG00000127191 CDS Human protein_coding chr9:139793321 chr9:139793320 nonsynonymous SNV 0.670 5 20 hm7G_associated_SNPs_24744 0 0 1 0 2 TRAF2 chr9:139793380 5'GT 139793380 Upstream 61bp 22699 chr1 1222618 1222618 1 + G A rs566273036 1222619 + 1222599 1222639 41 GGCATGGGAGGACAGCCACGGGAGCCAGGACGGCCACTTCG GGCATGGGAGGACAGCCACAGGAGCCAGGACGGCCACTTCG < 41bp 0.509614862858064 0.733448067954581 NA NA prediction 0.447666410193034 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1222619 chr1:1222618 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_24746 0 0 0 0 1 SCNN1D chr1:1222679 5'GT 1222679 Upstream 62bp 22700 chr11 551945 551945 1 + G A PRAD 551946 + 551926 551966 41 AACCCCACCAAGGGCCTGCGGGAGCGTAGGCACCAGTGCCA AACCCCACCAAGGGCCTGCAGGAGCGTAGGCACCAGTGCCA < 41bp 0.512911522580925 0.73673762791157 NA NA prediction 0.447652210661288 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551946 chr11:551945 nonsynonymous SNV 0.940 0 20 hm7G_associated_SNPs_24747 0 0 0 0 2 LRRC56 chr11:551903 3'AG 551903 Downstream 43bp 22701 chr11 551945 551945 1 + G A PRAD 551946 + 551926 551966 41 AACCCCACCAAGGGCCTGCGGGAGCGTAGGCACCAGTGCCA AACCCCACCAAGGGCCTGCAGGAGCGTAGGCACCAGTGCCA < 41bp 0.512911522580925 0.73673762791157 NA NA prediction 0.447652210661288 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551946 chr11:551945 nonsynonymous SNV 0.940 0 20 hm7G_associated_SNPs_24747 0 0 0 0 2 LRRC56 chr11:551967 5'GT 551967 Upstream 23bp 22702 chr3 172480284 172480284 1 + G T LUAD 172480285 + 172480265 172480305 41 ATTGTATTTTAAGTTTCCTGGGATTTTCAGATGAAGAGAAA ATTGTATTTTAAGTTTCCTTGGATTTTCAGATGAAGAGAAA < 41bp 0.393996401732258 0.723822815323618 NA NA prediction 0.447645630647236 Functional Gain - ECT2 ENSG00000114346 CDS Human protein_coding chr3:172480285 chr3:172480284 synonymous SNV . 0 20 hm7G_associated_SNPs_24748 0 0 1 0 2 ECT2 chr3:172480206 3'AG 172480206 Downstream 79bp 22703 chr3 172480284 172480284 1 + G T LUAD 172480285 + 172480265 172480305 41 ATTGTATTTTAAGTTTCCTGGGATTTTCAGATGAAGAGAAA ATTGTATTTTAAGTTTCCTTGGATTTTCAGATGAAGAGAAA < 41bp 0.393996401732258 0.723822815323618 NA NA prediction 0.447645630647236 Functional Gain - ECT2 ENSG00000114346 CDS Human protein_coding chr3:172480285 chr3:172480284 synonymous SNV . 0 20 hm7G_associated_SNPs_24748 0 0 1 0 2 ECT2 chr3:172480336 5'GT 172480336 Upstream 53bp 22704 chr5 176520431 176520431 1 + G A UVM 176520432 + 176520412 176520452 41 CCTGGAGTCAGGCTCTTCCGGCAAGTCAAGCTCATCCCTGG CCTGGAGTCAGGCTCTTCCAGCAAGTCAAGCTCATCCCTGG < 41bp 0.517773515138554 0.741562331651396 NA NA prediction 0.447577633025684 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520432 chr5:176520431 nonsynonymous SNV 0.315 1 20 hm7G_associated_SNPs_24749 0 0 1 0 2 FGFR4 chr5:176520407 3'AG 176520407 Downstream 25bp 22705 chr5 176520431 176520431 1 + G A UVM 176520432 + 176520412 176520452 41 CCTGGAGTCAGGCTCTTCCGGCAAGTCAAGCTCATCCCTGG CCTGGAGTCAGGCTCTTCCAGCAAGTCAAGCTCATCCCTGG < 41bp 0.517773515138554 0.741562331651396 NA NA prediction 0.447577633025684 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520432 chr5:176520431 nonsynonymous SNV 0.315 1 20 hm7G_associated_SNPs_24749 0 0 1 0 2 FGFR4 chr5:176520502 5'GT 176520502 Upstream 72bp 22706 chr15 45048627 45048627 1 + G T UCEC 45048628 + 45048608 45048648 41 AAGGAGCTTCAGACCCTGAGGAACATGCAGAAGGAAGCTAT AAGGAGCTTCAGACCCTGATGAACATGCAGAAGGAAGCTAT < 41bp 0.674677350351053 0.898463242514957 NA NA prediction 0.447571784327808 Functional Gain - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45048628 chr15:45048627 nonsynonymous SNV 0.062 0 20 hm7G_associated_SNPs_24750 0 0 0 0 2 TRIM69 chr15:45048566 3'AG 45048566 Downstream 62bp 22707 chr15 45048627 45048627 1 + G T UCEC 45048628 + 45048608 45048648 41 AAGGAGCTTCAGACCCTGAGGAACATGCAGAAGGAAGCTAT AAGGAGCTTCAGACCCTGATGAACATGCAGAAGGAAGCTAT < 41bp 0.674677350351053 0.898463242514957 NA NA prediction 0.447571784327808 Functional Gain - TRIM69 ENSG00000185880 CDS Human protein_coding chr15:45048628 chr15:45048627 nonsynonymous SNV 0.062 0 20 hm7G_associated_SNPs_24750 0 0 0 0 2 TRIM69 chr15:45048661 5'GT 45048661 Upstream 35bp 22708 chr1 153730205 153730205 1 + G T UCEC 153730206 + 153730186 153730226 41 TCAGATATCTTGCCCCGGTGGGCCATCATTGGTTGGCTCCT TCAGATATCTTGCCCCGGTTGGCCATCATTGGTTGGCTCCT < 41bp 0.379023723037423 0.723782333655086 NA NA prediction 0.447564667310171 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153730206 chr1:153730205 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_24751 0 0 1 0 1 INTS3 chr1:153730239 5'GT 153730239 Upstream 35bp 22709 chr11 126162381 126162381 1 + G T LUSC 126162382 + 126162362 126162402 41 TCCCCCACAGACTGGTTCAGGCAGACCCTGCTGAAGAAGCC TCCCCCACAGACTGGTTCATGCAGACCCTGCTGAAGAAGCC < 41bp 0.380810643415887 0.723781653779108 NA NA prediction 0.447563307558215 Functional Gain - TIRAP ENSG00000150455 CDS Human protein_coding chr11:126162382 chr11:126162381 nonsynonymous SNV 0.945 4 20 hm7G_associated_SNPs_24752 0 0 0 0 1 TIRAP chr11:126162372 3'AG 126162372 Downstream 10bp 22710 chr19 4033449 4033449 1 + G A COAD 4033450 + 4033430 4033470 41 CGGCTCTCCGTGCCCTGCCGGGCAGAGACCTGTGCCCACCT CGGCTCTCCGTGCCCTGCCAGGCAGAGACCTGTGCCCACCT < 41bp 0.503478617222369 0.727259909716983 NA NA prediction 0.447562584989229 Functional Gain - PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4033450 chr19:4033449 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_24753 0 0 0 0 1 PIAS4 chr19:4033418 3'AG 4033418 Downstream 32bp 22711 chr4 3443844 3443844 1 + G T LUAD 3443845 + 3443825 3443865 41 TTCCAGCCCCAGCCTGGCGGGGTGAGCACTGACCTTGTCGC TTCCAGCCCCAGCCTGGCGTGGTGAGCACTGACCTTGTCGC < 41bp 0.40109136969152 0.723762029453815 NA NA prediction 0.44752405890763 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3443845 chr4:3443844 nonsynonymous SNV 0.251 1 20 hm7G_associated_SNPs_24756 0 0 0 0 1 HGFAC chr4:3443845 5'GT 3443845 Upstream 2bp 22712 chr19 45769530 45769530 1 + G T UCEC 45769531 + 45769511 45769551 41 AGAAAAATATTGTACACAGGGACCTGAAGGTAAGCCCCCGA AGAAAAATATTGTACACAGTGACCTGAAGGTAAGCCCCCGA < 41bp 0.374661450394657 0.723752777329797 NA NA prediction 0.447505554659594 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45769531 chr19:45769530 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_24759 0 0 1 0 2 MARK4 chr19:45769483 3'AG 45769483 Downstream 48bp 22713 chr19 45769530 45769530 1 + G T UCEC 45769531 + 45769511 45769551 41 AGAAAAATATTGTACACAGGGACCTGAAGGTAAGCCCCCGA AGAAAAATATTGTACACAGTGACCTGAAGGTAAGCCCCCGA < 41bp 0.374661450394657 0.723752777329797 NA NA prediction 0.447505554659594 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45769531 chr19:45769530 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_24759 0 0 1 0 2 MARK4 chr19:45769539 5'GT 45769539 Upstream 10bp 22714 chr12 109637223 109637223 1 + G T BRCA 109637224 + 109637204 109637244 41 CAGTTACCGAATTACCATCGGCAATAAGACGTGTGTGTTTG CAGTTACCGAATTACCATCTGCAATAAGACGTGTGTGTTTG < 41bp 0.384709983083516 0.723744231862502 NA NA prediction 0.447488463725003 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109637224 chr12:109637223 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_24760 0 0 1 0 1 ACACB chr12:109637207 3'AG 109637207 Downstream 17bp 22715 chrX 119512536 119512536 1 + G T UCEC 119512537 + 119512517 119512557 41 CTGCTTTTGCTTACAGAGAGGTGATGAAAATGACATCCGAT CTGCTTTTGCTTACAGAGATGTGATGAAAATGACATCCGAT < 41bp 0.657473865242335 0.881215021587329 NA NA prediction 0.447482312689989 Functional Gain - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119512537 chrX:119512536 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24761 0 0 0 0 2 ATP1B4 chrX:119512533 3'AG 119512533 Downstream 4bp 22716 chrX 119512536 119512536 1 + G T UCEC 119512537 + 119512517 119512557 41 CTGCTTTTGCTTACAGAGAGGTGATGAAAATGACATCCGAT CTGCTTTTGCTTACAGAGATGTGATGAAAATGACATCCGAT < 41bp 0.657473865242335 0.881215021587329 NA NA prediction 0.447482312689989 Functional Gain - ATP1B4 ENSG00000101892 CDS Human protein_coding chrX:119512537 chrX:119512536 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24761 0 0 0 0 2 ATP1B4 chrX:119512628 5'GT 119512628 Upstream 93bp 22717 chr15 72862610 72862610 1 + G T GBM 72862611 + 72862591 72862631 41 GTAAAGCAGAGTTTTGCTGGGTGTGTCTTGGCCCATGGGAA GTAAAGCAGAGTTTTGCTGTGTGTGTCTTGGCCCATGGGAA < 41bp 0.394193919093605 0.723716214683249 NA NA prediction 0.447432429366497 Functional Gain - ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72862611 chr15:72862610 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24764 0 0 1 0 2 ARIH1 chr15:72862518 3'AG 72862518 Downstream 93bp 22718 chr15 72862610 72862610 1 + G T GBM 72862611 + 72862591 72862631 41 GTAAAGCAGAGTTTTGCTGGGTGTGTCTTGGCCCATGGGAA GTAAAGCAGAGTTTTGCTGTGTGTGTCTTGGCCCATGGGAA < 41bp 0.394193919093605 0.723716214683249 NA NA prediction 0.447432429366497 Functional Gain - ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72862611 chr15:72862610 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24764 0 0 1 0 2 ARIH1 chr15:72862648 5'GT 72862648 Upstream 39bp 22719 chr22 25016894 25016894 1 + G A BLCA 25016895 + 25016875 25016915 41 CCCAGTGAGGTGTTCTGCCGGGATAGAAAGGTGCTTCGGGA CCCAGTGAGGTGTTCTGCCAGGATAGAAAGGTGCTTCGGGA < 41bp 0.500576777510965 0.724274317818192 NA NA prediction 0.447395080614454 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25016895 chr22:25016894 nonsynonymous SNV 0.206 0 20 hm7G_associated_SNPs_24767 0 0 1 0 1 GGT1 chr22:25016880 3'AG 25016880 Downstream 15bp 22720 chr15 81426689 81426689 1 + G T LIHC 81426690 + 81426670 81426710 41 GATGGCGCAGAACGTGTATGGTCCGGGAGTCCGGATAGGCA GATGGCGCAGAACGTGTATTGTCCGGGAGTCCGGATAGGCA < 41bp 0.398064835776784 0.72368803172804 NA NA prediction 0.447376063456079 Functional Gain - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81426690 chr15:81426689 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_24770 0 0 1 0 1 CFAP161 chr15:81426739 5'GT 81426739 Upstream 51bp 22721 chr22 25264776 25264776 1 + G T SARC 25264777 + 25264757 25264797 41 AAGATGATGATGAGGCCACGGATTATGTGTTCAGGATCATC AAGATGATGATGAGGCCACTGATTATGTGTTCAGGATCATC < 41bp 0.369260072997568 0.723672813846354 NA NA prediction 0.447345627692709 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264777 chr22:25264776 synonymous SNV . 0 20 hm7G_associated_SNPs_24771 0 0 0 0 2 SGSM1 chr22:25264690 3'AG 25264690 Downstream 87bp 22722 chr22 25264776 25264776 1 + G T SARC 25264777 + 25264757 25264797 41 AAGATGATGATGAGGCCACGGATTATGTGTTCAGGATCATC AAGATGATGATGAGGCCACTGATTATGTGTTCAGGATCATC < 41bp 0.369260072997568 0.723672813846354 NA NA prediction 0.447345627692709 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264777 chr22:25264776 synonymous SNV . 0 20 hm7G_associated_SNPs_24771 0 0 0 0 2 SGSM1 chr22:25264822 5'GT 25264822 Upstream 47bp 22723 chr10 98088496 98088496 1 + G T STAD 98088497 + 98088477 98088517 41 ATTAGGGGTAAGAAGATGGGGCATGATGTAGATTTTTTAAT ATTAGGGGTAAGAAGATGGTGCATGATGTAGATTTTTTAAT < 41bp 0.400188123874287 0.723670768918468 NA NA prediction 0.447341537836937 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98088497 chr10:98088496 nonsynonymous SNV 0.197 4 20 hm7G_associated_SNPs_24772 0 0 0 0 2 DNTT chr10:98088482 3'AG 98088482 Downstream 15bp 22724 chr10 98088496 98088496 1 + G T STAD 98088497 + 98088477 98088517 41 ATTAGGGGTAAGAAGATGGGGCATGATGTAGATTTTTTAAT ATTAGGGGTAAGAAGATGGTGCATGATGTAGATTTTTTAAT < 41bp 0.400188123874287 0.723670768918468 NA NA prediction 0.447341537836937 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98088497 chr10:98088496 nonsynonymous SNV 0.197 4 20 hm7G_associated_SNPs_24772 0 0 0 0 2 DNTT chr10:98088587 5'GT 98088587 Upstream 92bp 22725 chr2 241535790 241535790 1 + G A LUAD 241535791 + 241535771 241535811 41 GTCCATGCCCCCCGTGGCTGGCACCGCGTGCCATGCATACG GTCCATGCCCCCCGTGGCTAGCACCGCGTGCCATGCATACG < 41bp 0.497284633246051 0.723659213775464 NA NA prediction 0.447318427550929 Functional Gain - CAPN10 ENSG00000142330 CDS Human protein_coding chr2:241535791 chr2:241535790 nonsynonymous SNV 0.584 2 20 hm7G_associated_SNPs_24777 0 0 1 0 1 CAPN10 chr2:241535736 3'AG 241535736 Downstream 55bp 22726 chr2 220494941 220494941 1 + G A LUSC 220494942 + 220494922 220494962 41 GCCGGCCCTGGAGCCCATCGGCCAGTTATGACCTGCGGGAG GCCGGCCCTGGAGCCCATCAGCCAGTTATGACCTGCGGGAG < 41bp 0.507143676059553 0.730779367160862 NA NA prediction 0.447271382202619 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220494942 chr2:220494941 synonymous SNV . 0 20 hm7G_associated_SNPs_24779 0 0 0 0 1 SLC4A3 chr2:220494875 3'AG 220494875 Downstream 67bp 22727 chr16 10851764 10851764 1 + G T THCA 10851765 + 10851745 10851785 41 TCCTCCGAGATGTGGACTGGGGAGAGGTCGACTACCTCATT TCCTCCGAGATGTGGACTGTGGAGAGGTCGACTACCTCATT < 41bp 0.677406921314299 0.901009086809088 NA NA prediction 0.447204330989579 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10851765 chr16:10851764 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_24782 0 0 0 0 1 NUBP1 chr16:10851730 3'AG 10851730 Downstream 35bp 22728 chr10 72511255 72511255 1 + G A SKCM 72511256 + 72511236 72511276 41 TCTCCCCCCAACTGAGGGTGGCCCCCGCAGCAGCCTGGCCT TCTCCCCCCAACTGAGGGTAGCCCCCGCAGCAGCCTGGCCT < 41bp 0.51857615959353 0.742174111212968 NA NA prediction 0.447195903238875 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72511256 chr10:72511255 nonsynonymous SNV 0.974 0 20 hm7G_associated_SNPs_24783 0 0 1 0 1 ADAMTS14 chr10:72511234 3'AG 72511234 Downstream 22bp 22729 chr5 128440935 128440935 1 + G T STAD 128440936 + 128440916 128440956 41 AACAGAACAATACCCTAAAGGTCTTGGGAGCACGGTTCAAG AACAGAACAATACCCTAAATGTCTTGGGAGCACGGTTCAAG < 41bp 0.660753782236669 0.884327222546341 NA NA prediction 0.447146880619344 Functional Gain - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440936 chr5:128440935 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24785 0 0 1 0 1 ISOC1 chr5:128440878 3'AG 128440878 Downstream 58bp 22730 chr11 44129247 44129247 1 + G T UCEC 44129248 + 44129228 44129268 41 ACCAGGAGTGTGAGGAAGAGGCTGTCTGTGTCATTATGTGT ACCAGGAGTGTGAGGAAGATGCTGTCTGTGTCATTATGTGT < 41bp 0.530856947821159 0.754427616257259 NA NA prediction 0.447141336872199 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44129248 chr11:44129247 nonsynonymous SNV 0.925 2 20 hm7G_associated_SNPs_24786 0 0 1 0 1 EXT2 chr11:44129233 3'AG 44129233 Downstream 15bp 22731 chr3 50197082 50197082 1 + G A LGG 50197083 + 50197063 50197103 41 TCGCCGGTCTTCTTCTCTGGGCTTCCCTACTGACCGGGGCC TCGCCGGTCTTCTTCTCTGAGCTTCCCTACTGACCGGGGCC < 41bp 0.517662328760789 0.741225106553699 NA NA prediction 0.44712555558582 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50197083 chr3:50197082 stopgain 0.995 0 20 hm7G_associated_SNPs_24788 0 0 1 0 2 SEMA3F chr3:50197008 3'AG 50197008 Downstream 75bp 22732 chr3 50197082 50197082 1 + G A LGG 50197083 + 50197063 50197103 41 TCGCCGGTCTTCTTCTCTGGGCTTCCCTACTGACCGGGGCC TCGCCGGTCTTCTTCTCTGAGCTTCCCTACTGACCGGGGCC < 41bp 0.517662328760789 0.741225106553699 NA NA prediction 0.44712555558582 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50197083 chr3:50197082 stopgain 0.995 0 20 hm7G_associated_SNPs_24788 0 0 1 0 2 SEMA3F chr3:50197167 5'GT 50197167 Upstream 86bp 22733 chr8 10387070 10387070 1 + G T UCEC 10387071 + 10387051 10387091 41 TCGGTATTCCAGAATCACAGGGGGGATGGAGGCGGAGGTGG TCGGTATTCCAGAATCACATGGGGGATGGAGGCGGAGGTGG < 41bp 0.670271736880106 0.893828191207856 NA NA prediction 0.4471129086555 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10387071 chr8:10387070 nonsynonymous SNV 0.333 4 20 hm7G_associated_SNPs_24790 0 0 0 0 1 PRSS55 chr8:10387017 3'AG 10387017 Downstream 54bp 22734 chr11 67225898 67225898 1 + G A CESC 67225899 + 67225879 67225919 41 AGCTGCGGGAGGCGGTACCGGCTCTGCTCGGGGAGCCGCTG AGCTGCGGGAGGCGGTACCAGCTCTGCTCGGGGAGCCGCTG < 41bp 0.500100815093798 0.723655590150649 NA NA prediction 0.447109550113702 Functional Gain - CABP4 ENSG00000175544 CDS Human protein_coding chr11:67225899 chr11:67225898 synonymous SNV . 0 20 hm7G_associated_SNPs_24791 0 0 0 0 2 CABP4 chr11:67225842 3'AG 67225842 Downstream 57bp 22735 chr11 67225898 67225898 1 + G A CESC 67225899 + 67225879 67225919 41 AGCTGCGGGAGGCGGTACCGGCTCTGCTCGGGGAGCCGCTG AGCTGCGGGAGGCGGTACCAGCTCTGCTCGGGGAGCCGCTG < 41bp 0.500100815093798 0.723655590150649 NA NA prediction 0.447109550113702 Functional Gain - CABP4 ENSG00000175544 CDS Human protein_coding chr11:67225899 chr11:67225898 synonymous SNV . 0 20 hm7G_associated_SNPs_24791 0 0 0 0 2 CABP4 chr11:67225989 5'GT 67225989 Upstream 92bp 22736 chr4 8220001 8220001 1 + G A BLCA 8220002 + 8219982 8220022 41 CCTCTTCCGGCTCCAGGTGGGCTCTTAGGATCCCCCAGGAC CCTCTTCCGGCTCCAGGTGAGCTCTTAGGATCCCCCAGGAC < 41bp 0.51132233524596 0.734869314784094 NA NA prediction 0.447093959076267 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8220002 chr4:8220001 stopgain 0.930 1 20 hm7G_associated_SNPs_24792 0 0 1 0 2 SH3TC1 chr4:8219998 3'AG 8219998 Downstream 4bp 22737 chr4 8220001 8220001 1 + G A BLCA 8220002 + 8219982 8220022 41 CCTCTTCCGGCTCCAGGTGGGCTCTTAGGATCCCCCAGGAC CCTCTTCCGGCTCCAGGTGAGCTCTTAGGATCCCCCAGGAC < 41bp 0.51132233524596 0.734869314784094 NA NA prediction 0.447093959076267 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8220002 chr4:8220001 stopgain 0.930 1 20 hm7G_associated_SNPs_24792 0 0 1 0 2 SH3TC1 chr4:8220074 5'GT 8220074 Upstream 74bp 22738 chr16 67298317 67298317 1 + G T UCEC 67298318 + 67298298 67298338 41 AGGAGCGGCAGGACAAGGAGGTCTTCCAGCAGAACATGAAG AGGAGCGGCAGGACAAGGATGTCTTCCAGCAGAACATGAAG < 41bp 0.370146546453018 0.723542778445194 NA NA prediction 0.447085556890387 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67298318 chr16:67298317 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_24794 0 0 0 0 1 SLC9A5 chr16:67298255 3'AG 67298255 Downstream 63bp 22739 chr2 113416587 113416587 1 + G T SKCM 113416588 + 113416568 113416608 41 AACAGTCTCATTCAAACTTGGAGATTTGGAGGAAGCTCCAG AACAGTCTCATTCAAACTTTGAGATTTGGAGGAAGCTCCAG < 41bp 0.677498549755985 0.901036215292629 NA NA prediction 0.447075331073287 Functional Gain - SLC20A1 ENSG00000144136 CDS Human protein_coding chr2:113416588 chr2:113416587 stopgain 1.000 1 20 hm7G_associated_SNPs_24795 0 0 1 0 1 SLC20A1 chr2:113416671 5'GT 113416671 Upstream 85bp 22740 chr3 119305413 119305413 1 + G T UCEC 119305414 + 119305394 119305434 41 ACCCTTGCAGTGGGGAAAAGGACTGATGGAGCTGCTACCAG ACCCTTGCAGTGGGGAAAATGACTGATGGAGCTGCTACCAG < 41bp 0.67171571798954 0.895238401712507 NA NA prediction 0.447045367445934 Functional Gain - ADPRH ENSG00000144843 CDS Human protein_coding chr3:119305414 chr3:119305413 stopgain 0.999 1 20 hm7G_associated_SNPs_24796 0 0 0 0 1 ADPRH chr3:119305492 5'GT 119305492 Upstream 80bp 22741 chr1 46976908 46976908 1 + G T LUSC 46976909 + 46976889 46976929 41 AAAGCTGAGAAGAGCCCTGGGGCTGACAGCAAGGGGCTGGG AAAGCTGAGAAGAGCCCTGTGGCTGACAGCAAGGGGCTGGG < 41bp 0.678800220970592 0.902317556221829 NA NA prediction 0.447034670502472 Functional Gain - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976909 chr1:46976908 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24797 0 0 0 0 1 DMBX1 chr1:46976955 5'GT 46976955 Upstream 48bp 22742 chr19 7986386 7986386 1 + G A HNSC 7986387 + 7986367 7986407 41 GCATCCGGGTGGCCTTCAGGGACCAAGGCGCCGGGAGGCAC GCATCCGGGTGGCCTTCAGAGACCAAGGCGCCGGGAGGCAC < 41bp 0.500522546324559 0.724021958466639 NA NA prediction 0.446998824284159 Functional Gain - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986387 chr19:7986386 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_24798 0 0 0 0 2 SNAPC2 chr19:7986308 3'AG 7986308 Downstream 79bp 22743 chr19 7986386 7986386 1 + G A HNSC 7986387 + 7986367 7986407 41 GCATCCGGGTGGCCTTCAGGGACCAAGGCGCCGGGAGGCAC GCATCCGGGTGGCCTTCAGAGACCAAGGCGCCGGGAGGCAC < 41bp 0.500522546324559 0.724021958466639 NA NA prediction 0.446998824284159 Functional Gain - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986387 chr19:7986386 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_24798 0 0 0 0 2 SNAPC2 chr19:7986427 5'GT 7986427 Upstream 42bp 22744 chr11 61106879 61106879 1 + G A COAD 61106880 + 61106860 61106900 41 AAGAAGGCAGGCCGGCGGGGGCTGTGCGGCACGGTGCTTAT AAGAAGGCAGGCCGGCGGGAGCTGTGCGGCACGGTGCTTAT < 41bp 0.502956386610128 0.726437036510297 NA NA prediction 0.446961299800338 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61106880 chr11:61106879 nonsynonymous SNV 0.493 4 20 hm7G_associated_SNPs_24799 0 0 1 0 1 TKFC chr11:61106907 5'GT 61106907 Upstream 29bp 22745 chr1 43783044 43783044 1 + G T CHOL 43783045 + 43783025 43783065 41 GGCCATGATCAAGAAGGACGGGCTGAAGATGAACGCAGCCA GGCCATGATCAAGAAGGACTGGCTGAAGATGAACGCAGCCA < 41bp 0.673739384657086 0.897200414584591 NA NA prediction 0.44692205985501 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43783045 chr1:43783044 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_24801 0 0 0 0 1 TIE1 chr1:43783080 5'GT 43783080 Upstream 37bp 22746 chr21 15588536 15588536 1 + G T STAD 15588537 + 15588517 15588557 41 GCTCAGGAGGAGGCCGACAGGACCGTGTTTGTTGGGAATTT GCTCAGGAGGAGGCCGACATGACCGTGTTTGTTGGGAATTT < 41bp 0.652380315752179 0.875820286799712 NA NA prediction 0.446879942095066 Functional Gain - RBM11 ENSG00000185272 CDS Human protein_coding chr21:15588537 chr21:15588536 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_24805 0 0 0 0 1 RBM11 chr21:15588603 5'GT 15588603 Upstream 68bp 22747 chr5 140237199 140237199 1 + G T LUSC 140237200 + 140237180 140237220 41 TGTACGCGCTGCAGCCGCTGGACCACGAGGAGCTGGAGCTG TGTACGCGCTGCAGCCGCTTGACCACGAGGAGCTGGAGCTG < 41bp 0.384017343634233 0.723436418467678 NA NA prediction 0.446872836935356 Functional Gain - PCDHA10 ENSG00000250120 CDS Human protein_coding chr5:140237200 chr5:140237199 synonymous SNV . 0 20 hm7G_associated_SNPs_24806 0 0 0 0 1 PCDHA10 chr5:140237232 5'GT 140237232 Upstream 34bp 22748 chr1 46726608 46726608 1 + G T UCEC 46726609 + 46726589 46726629 41 TGAAGAACTGGTACAATGAGGTTGGGAAATGGCTCGGAGGG TGAAGAACTGGTACAATGATGTTGGGAAATGGCTCGGAGGG < 41bp 0.668944391356933 0.892360942506838 NA NA prediction 0.446833102299809 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46726609 chr1:46726608 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_24809 0 0 1 0 1 RAD54L chr1:46726687 5'GT 46726687 Upstream 80bp 22749 chr3 196509530 196509530 1 + G T BLCA 196509531 + 196509511 196509551 41 CTGAATCATGTCTGATAACGGAGAACTGGAAGATAAGCCTC CTGAATCATGTCTGATAACTGAGAACTGGAAGATAAGCCTC < 41bp 0.664099355692221 0.887505119489387 NA NA prediction 0.446811527594334 Functional Gain - PAK2 ENSG00000180370 CDS Human protein_coding chr3:196509531 chr3:196509530 stopgain 1.000 1 20 hm7G_associated_SNPs_24810 0 0 1 0 1 PAK2 chr3:196509497 3'AG 196509497 Downstream 34bp 22750 chr11 67071065 67071065 1 + G A rs566914023 67071066 + 67071046 67071086 41 GAGGGAAGGGGCCGTGCCCGGTGCCAGCCCAGGTGCTCGCG GAGGGAAGGGGCCGTGCCCAGTGCCAGCCCAGGTGCTCGCG < 41bp 0.518236195838333 0.741637087506465 NA NA prediction 0.446801783336263 Functional Gain - SSH3 ENSG00000172830 UTR5 Human protein_coding chr11:67071066 chr11:67071065 . . 0 20 hm7G_associated_SNPs_24813 0 0 1 0 1 SSH3 chr11:67071162 5'GT 67071162 Upstream 98bp 22751 chrX 48923078 48923078 1 + G A CESC 48923079 + 48923059 48923099 41 TCTGGGGGGAGCCCTGAGCGGCGAACCCCATGGAAACCACC TCTGGGGGGAGCCCTGAGCAGCGAACCCCATGGAAACCACC < 41bp 0.511740919738818 0.735141042431826 NA NA prediction 0.446800245386017 Functional Gain - CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48923079 chrX:48923078 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_24814 0 0 0 0 2 CCDC120 chrX:48922985 3'AG 48922985 Downstream 94bp 22752 chrX 48923078 48923078 1 + G A CESC 48923079 + 48923059 48923099 41 TCTGGGGGGAGCCCTGAGCGGCGAACCCCATGGAAACCACC TCTGGGGGGAGCCCTGAGCAGCGAACCCCATGGAAACCACC < 41bp 0.511740919738818 0.735141042431826 NA NA prediction 0.446800245386017 Functional Gain - CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48923079 chrX:48923078 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_24814 0 0 0 0 2 CCDC120 chrX:48923159 5'GT 48923159 Upstream 82bp 22753 chr10 45938918 45938918 1 + G T UCEC 45938919 + 45938899 45938939 41 GCGACCAGGTGGTGGAGGAGGACCCGGAGCTGCAGGACTTC GCGACCAGGTGGTGGAGGATGACCCGGAGCTGCAGGACTTC < 41bp 0.68255614339426 0.905947713344401 NA NA prediction 0.446783139900282 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938919 chr10:45938918 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_24817 0 0 0 0 2 ALOX5 chr10:45938864 3'AG 45938864 Downstream 55bp 22754 chr10 45938918 45938918 1 + G T UCEC 45938919 + 45938899 45938939 41 GCGACCAGGTGGTGGAGGAGGACCCGGAGCTGCAGGACTTC GCGACCAGGTGGTGGAGGATGACCCGGAGCTGCAGGACTTC < 41bp 0.68255614339426 0.905947713344401 NA NA prediction 0.446783139900282 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938919 chr10:45938918 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_24817 0 0 0 0 2 ALOX5 chr10:45938985 5'GT 45938985 Upstream 68bp 22755 chr11 111808245 111808245 1 + G T UCEC 111808246 + 111808226 111808266 41 GCTAGCCTGCCTGACCCGAGGGAACTTACTGGACGTCCTGC GCTAGCCTGCCTGACCCGATGGAACTTACTGGACGTCCTGC < 41bp 0.383265265626698 0.723388558312807 NA NA prediction 0.446777116625614 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111808246 chr11:111808245 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_24820 0 0 1 0 1 DIXDC1 chr11:111808283 5'GT 111808283 Upstream 39bp 22756 chr19 45525444 45525444 1 + G A CESC 45525445 + 45525425 45525465 41 ATCTGCAGGGTGCGGCTCCGGCCTCACGTCAGCCCCCGGCA ATCTGCAGGGTGCGGCTCCAGCCTCACGTCAGCCCCCGGCA < 41bp 0.492214945303939 0.723373577797537 NA NA prediction 0.446747155595074 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45525445 chr19:45525444 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_24823 0 0 0 0 1 RELB chr19:45525468 5'GT 45525468 Upstream 25bp 22757 chr21 45553649 45553649 1 + G A LIHC 45553650 + 45553630 45553670 41 ATTCACGTCCCTGTCCCCCGGCGGTCGGACGCCTTCCCAGC ATTCACGTCCCTGTCCCCCAGCGGTCGGACGCCTTCCCAGC < 41bp 0.513962256587244 0.737335304537716 NA NA prediction 0.446746095900944 Functional Gain - C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45553650 chr21:45553649 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_24824 0 0 1 0 1 C21orf33 chr21:45553720 5'GT 45553720 Upstream 72bp 22758 chr19 10404460 10404460 1 + G A CESC 10404461 + 10404441 10404481 41 GCTGAGCTGTGTGGCGCACGGGGTACCGCCGCCTGATGTGA GCTGAGCTGTGTGGCGCACAGGGTACCGCCGCCTGATGTGA < 41bp 0.526282598111392 0.749655334210055 NA NA prediction 0.446745472197327 Functional Gain - ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10404461 chr19:10404460 nonsynonymous SNV 0.532 4 20 hm7G_associated_SNPs_24825 0 0 1 0 1 ICAM5 chr19:10404374 3'AG 10404374 Downstream 87bp 22759 chr14 104639699 104639699 1 + G A rs370306538 104639700 + 104639680 104639720 41 GCGAGCTGCGGGCACCCACGGCCGAGAAGGCGGCTTTCTAC GCGAGCTGCGGGCACCCACAGCCGAGAAGGCGGCTTTCTAC < 41bp 0.505451120241694 0.728811222757568 NA NA prediction 0.446720205031747 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104639700 chr14:104639699 synonymous SNV . 0 20 hm7G_associated_SNPs_24828 0 0 0 0 1 KIF26A chr14:104639667 3'AG 104639667 Downstream 33bp 22760 chr5 7895918 7895918 1 + G T BLCA 7895919 + 7895899 7895939 41 CAATCCCCATCATAATGGTGGGTCCAGGAACCGGCATAGCC CAATCCCCATCATAATGGTTGGTCCAGGAACCGGCATAGCC < 41bp 0.669539273728794 0.892892699549651 NA NA prediction 0.446706851641713 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7895919 chr5:7895918 synonymous SNV . 0 20 hm7G_associated_SNPs_24829 0 0 1 0 2 MTRR chr5:7895847 3'AG 7895847 Downstream 72bp 22761 chr5 7895918 7895918 1 + G T BLCA 7895919 + 7895899 7895939 41 CAATCCCCATCATAATGGTGGGTCCAGGAACCGGCATAGCC CAATCCCCATCATAATGGTTGGTCCAGGAACCGGCATAGCC < 41bp 0.669539273728794 0.892892699549651 NA NA prediction 0.446706851641713 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7895919 chr5:7895918 synonymous SNV . 0 20 hm7G_associated_SNPs_24829 0 0 1 0 2 MTRR chr5:7895965 5'GT 7895965 Upstream 48bp 22762 chr5 54457008 54457008 1 + G T GBM 54457009 + 54456989 54457029 41 TTTTGCAAGAAAAAACTACGGAGTAACTTTCCCCATCTTCC TTTTGCAAGAAAAAACTACTGAGTAACTTTCCCCATCTTCC < 41bp 0.394629715390933 0.72332906374959 NA NA prediction 0.446658127499179 Functional Gain - GPX8 ENSG00000164294 CDS Human protein_coding chr5:54457009 chr5:54457008 stopgain 1.000 1 20 hm7G_associated_SNPs_24831 0 0 1 0 1 GPX8 chr5:54457083 5'GT 54457083 Upstream 76bp 22763 chr5 128442668 128442668 1 + G T LUAD 128442669 + 128442649 128442689 41 GCATCCAACAAACTGCCCTGGAGCTAGTTGGCCGAGGAGTC GCATCCAACAAACTGCCCTTGAGCTAGTTGGCCGAGGAGTC < 41bp 0.671232842519715 0.894552033458121 NA NA prediction 0.446638381876812 Functional Gain - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128442669 chr5:128442668 synonymous SNV . 0 20 hm7G_associated_SNPs_24833 0 0 1 0 2 ISOC1 chr5:128442639 3'AG 128442639 Downstream 30bp 22764 chr5 128442668 128442668 1 + G T LUAD 128442669 + 128442649 128442689 41 GCATCCAACAAACTGCCCTGGAGCTAGTTGGCCGAGGAGTC GCATCCAACAAACTGCCCTTGAGCTAGTTGGCCGAGGAGTC < 41bp 0.671232842519715 0.894552033458121 NA NA prediction 0.446638381876812 Functional Gain - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128442669 chr5:128442668 synonymous SNV . 0 20 hm7G_associated_SNPs_24833 0 0 1 0 2 ISOC1 chr5:128442755 5'GT 128442755 Upstream 88bp 22765 chr17 19470503 19470503 1 + G T LUSC 19470504 + 19470484 19470524 41 GTGGTTGGCCTCCCCATCGGGATCGCGCTGATGTTTGCAAC GTGGTTGGCCTCCCCATCGTGATCGCGCTGATGTTTGCAAC < 41bp 0.38147936550817 0.723311507976447 NA NA prediction 0.446623015952895 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19470504 chr17:19470503 nonsynonymous SNV 0.098 4 20 hm7G_associated_SNPs_24834 0 0 1 0 2 SLC47A1 chr17:19470409 3'AG 19470409 Downstream 95bp 22766 chr17 19470503 19470503 1 + G T LUSC 19470504 + 19470484 19470524 41 GTGGTTGGCCTCCCCATCGGGATCGCGCTGATGTTTGCAAC GTGGTTGGCCTCCCCATCGTGATCGCGCTGATGTTTGCAAC < 41bp 0.38147936550817 0.723311507976447 NA NA prediction 0.446623015952895 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19470504 chr17:19470503 nonsynonymous SNV 0.098 4 20 hm7G_associated_SNPs_24834 0 0 1 0 2 SLC47A1 chr17:19470541 5'GT 19470541 Upstream 39bp 22767 chr14 94503782 94503782 1 + G T SARC 94503783 + 94503763 94503803 41 ACATTCTATCCATTCTTCGGGACCATCCTGAAAACAGGATT ACATTCTATCCATTCTTCGTGACCATCCTGAAAACAGGATT < 41bp 0.381323734365055 0.72330694573934 NA NA prediction 0.446613891478679 Functional Gain - OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94503783 chr14:94503782 synonymous SNV . 0 20 hm7G_associated_SNPs_24836 0 0 1 0 1 OTUB2 chr14:94503821 5'GT 94503821 Upstream 40bp 22768 chr20 61467640 61467640 1 + G A SKCM 61467641 + 61467621 61467661 41 CCGGTCCTCTGGGCCTGCAGGGCGTCCCGGGTGTTCCTGGC CCGGTCCTCTGGGCCTGCAAGGCGTCCCGGGTGTTCCTGGC < 41bp 0.497510727682469 0.72330227409908 NA NA prediction 0.44660454819816 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61467641 chr20:61467640 synonymous SNV . 0 20 hm7G_associated_SNPs_24837 0 0 1 0 1 COL9A3 chr20:61467685 5'GT 61467685 Upstream 46bp 22769 chr4 187178420 187178420 1 + G T SKCM 187178421 + 187178401 187178441 41 AAAAGGTAAATATTCCTTTGGTAACAAATGAAGAATGCCAG AAAAGGTAAATATTCCTTTTGTAACAAATGAAGAATGCCAG < 41bp 0.654087428646957 0.877377611043122 NA NA prediction 0.446580364792329 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187178421 chr4:187178420 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24838 0 0 0 0 2 KLKB1 chr4:187178380 3'AG 187178380 Downstream 41bp 22770 chr4 187178420 187178420 1 + G T SKCM 187178421 + 187178401 187178441 41 AAAAGGTAAATATTCCTTTGGTAACAAATGAAGAATGCCAG AAAAGGTAAATATTCCTTTTGTAACAAATGAAGAATGCCAG < 41bp 0.654087428646957 0.877377611043122 NA NA prediction 0.446580364792329 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187178421 chr4:187178420 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24838 0 0 0 0 2 KLKB1 chr4:187178519 5'GT 187178519 Upstream 100bp 22771 chr11 124847487 124847487 1 + G T LUAD 124847488 + 124847468 124847508 41 TACCTTACCAGAATTATATGGAAAATCAGGTAGGGAAATAT TACCTTACCAGAATTATATTGAAAATCAGGTAGGGAAATAT < 41bp 0.399800296004857 0.72328700524893 NA NA prediction 0.446574010497859 Functional Gain - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124847488 chr11:124847487 nonsynonymous SNV 0.229 0 20 hm7G_associated_SNPs_24839 0 0 0 0 1 CCDC15 chr11:124847496 5'GT 124847496 Upstream 10bp 22772 chr19 42383065 42383065 1 + G A LUAD 42383066 + 42383046 42383086 41 CTGTCTCTCCACAGGCCCTGGGTGCCAGGCCCTGTGGATGC CTGTCTCTCCACAGGCCCTAGGTGCCAGGCCCTGTGGATGC < 41bp 0.520998251489498 0.744276726405403 NA NA prediction 0.446556949831812 Functional Gain - CD79A ENSG00000105369 CDS Human protein_coding chr19:42383066 chr19:42383065 nonsynonymous SNV 0.757 0 20 hm7G_associated_SNPs_24840 0 0 0 0 1 CD79A chr19:42383060 3'AG 42383060 Downstream 6bp 22773 chr3 48436075 48436075 1 + G T COAD 48436076 + 48436056 48436096 41 AGCATAGTACTTAGGGTGAGGAAAGTAAGTGACTCCAGCAT AGCATAGTACTTAGGGTGATGAAAGTAAGTGACTCCAGCAT < 41bp 0.653677211435324 0.876943304783611 NA NA prediction 0.446532186696573 Functional Gain - FBXW12 ENSG00000164049 CDS Human protein_coding chr3:48436076 chr3:48436075 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_24843 0 0 0 0 1 FBXW12 chr3:48436025 3'AG 48436025 Downstream 51bp 22774 chr6 39047409 39047409 1 + G T LUSC 39047410 + 39047390 39047430 41 TCATCTTTGCCTTTGTGATGGACGAGCACGCCCGGGGGACC TCATCTTTGCCTTTGTGATTGACGAGCACGCCCGGGGGACC < 41bp 0.675013975545907 0.898274479072035 NA NA prediction 0.446521007052256 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39047410 chr6:39047409 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_24845 0 0 0 0 2 GLP1R chr6:39047340 3'AG 39047340 Downstream 70bp 22775 chr6 39047409 39047409 1 + G T LUSC 39047410 + 39047390 39047430 41 TCATCTTTGCCTTTGTGATGGACGAGCACGCCCGGGGGACC TCATCTTTGCCTTTGTGATTGACGAGCACGCCCGGGGGACC < 41bp 0.675013975545907 0.898274479072035 NA NA prediction 0.446521007052256 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39047410 chr6:39047409 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_24845 0 0 0 0 2 GLP1R chr6:39047478 5'GT 39047478 Upstream 70bp 22776 chr17 27898614 27898614 1 + G T GBM 27898615 + 27898595 27898635 41 TGCCTTTCCTCCAGGCTGAGGATGTCACCTTCCTCTACCAC TGCCTTTCCTCCAGGCTGATGATGTCACCTTCCTCTACCAC < 41bp 0.379184311577829 0.723250984886862 NA NA prediction 0.446501969773723 Functional Gain - TP53I13 ENSG00000167543 CDS Human protein_coding chr17:27898615 chr17:27898614 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_24847 0 0 1 0 1 TP53I13 chr17:27898609 3'AG 27898609 Downstream 6bp 22777 chrX 51640336 51640336 1 + G T UCEC 51640337 + 51640317 51640357 41 TCAAGTACTTGATGCTTAAGGACTACACAAAGGTGCCCATC TCAAGTACTTGATGCTTAATGACTACACAAAGGTGCCCATC < 41bp 0.674231171131795 0.897470443097959 NA NA prediction 0.446478543932328 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51640337 chrX:51640336 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_24851 0 0 1 0 2 MAGED1 chrX:51640304 3'AG 51640304 Downstream 33bp 22778 chrX 51640336 51640336 1 + G T UCEC 51640337 + 51640317 51640357 41 TCAAGTACTTGATGCTTAAGGACTACACAAAGGTGCCCATC TCAAGTACTTGATGCTTAATGACTACACAAAGGTGCCCATC < 41bp 0.674231171131795 0.897470443097959 NA NA prediction 0.446478543932328 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51640337 chrX:51640336 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_24851 0 0 1 0 2 MAGED1 chrX:51640367 5'GT 51640367 Upstream 32bp 22779 chr19 6743247 6743247 1 + G T DLBC 6743248 + 6743228 6743268 41 CCAGCAGCAGCTGGAAAATGGCTTTAAACAGCTGGAGAATG CCAGCAGCAGCTGGAAAATTGCTTTAAACAGCTGGAGAATG < 41bp 0.68222658603242 0.905460747513846 NA NA prediction 0.446468322962851 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6743248 chr19:6743247 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_24852 0 0 1 1 2 TRIP10 chr19:6743205 3'AG 6743205 Downstream 43bp 22780 chr19 6743247 6743247 1 + G T DLBC 6743248 + 6743228 6743268 41 CCAGCAGCAGCTGGAAAATGGCTTTAAACAGCTGGAGAATG CCAGCAGCAGCTGGAAAATTGCTTTAAACAGCTGGAGAATG < 41bp 0.68222658603242 0.905460747513846 NA NA prediction 0.446468322962851 Functional Gain - TRIP10 ENSG00000125733 CDS Human protein_coding chr19:6743248 chr19:6743247 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_24852 0 0 1 1 2 TRIP10 chr19:6743267 5'GT 6743267 Upstream 21bp 22781 chr16 50664794 50664794 1 + G T BRCA 50664795 + 50664775 50664815 41 ACTGAGGACCTGCGGAGCTGGGAGAAGAAGCAGCGAGCCCC ACTGAGGACCTGCGGAGCTTGGAGAAGAAGCAGCGAGCCCC < 41bp 0.683750829513125 0.906972711955547 NA NA prediction 0.446443764884844 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50664795 chr16:50664794 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_24856 0 0 1 0 2 NKD1 chr16:50664737 3'AG 50664737 Downstream 58bp 22782 chr16 50664794 50664794 1 + G T BRCA 50664795 + 50664775 50664815 41 ACTGAGGACCTGCGGAGCTGGGAGAAGAAGCAGCGAGCCCC ACTGAGGACCTGCGGAGCTTGGAGAAGAAGCAGCGAGCCCC < 41bp 0.683750829513125 0.906972711955547 NA NA prediction 0.446443764884844 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50664795 chr16:50664794 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_24856 0 0 1 0 2 NKD1 chr16:50664821 5'GT 50664821 Upstream 28bp 22783 chr16 55361258 55361258 1 + G T ESCA 55361259 + 55361239 55361279 41 GGAGTTTTACATCCAGCCTGGCACAACCAGGAGCCTATTAT GGAGTTTTACATCCAGCCTTGCACAACCAGGAGCCTATTAT < 41bp 0.681592491209958 0.904810417550624 NA NA prediction 0.446435852681331 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361259 chr16:55361258 synonymous SNV . 0 20 hm7G_associated_SNPs_24857 0 0 0 0 2 IRX6 chr16:55361208 3'AG 55361208 Downstream 51bp 22784 chr16 55361258 55361258 1 + G T ESCA 55361259 + 55361239 55361279 41 GGAGTTTTACATCCAGCCTGGCACAACCAGGAGCCTATTAT GGAGTTTTACATCCAGCCTTGCACAACCAGGAGCCTATTAT < 41bp 0.681592491209958 0.904810417550624 NA NA prediction 0.446435852681331 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55361259 chr16:55361258 synonymous SNV . 0 20 hm7G_associated_SNPs_24857 0 0 0 0 2 IRX6 chr16:55361317 5'GT 55361317 Upstream 60bp 22785 chr6 54792330 54792330 1 + G T COAD 54792331 + 54792311 54792351 41 TCGAGTGCGAACAGTAAAAGGCCAAGATTATCTTTCAAAAA TCGAGTGCGAACAGTAAAATGCCAAGATTATCTTTCAAAAA < 41bp 0.398480673617125 0.723215375774515 NA NA prediction 0.446430751549031 Functional Gain - FAM83B ENSG00000168143 CDS Human protein_coding chr6:54792331 chr6:54792330 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24858 0 0 0 0 1 FAM83B chr6:54792306 3'AG 54792306 Downstream 25bp 22786 chr2 219559288 219559288 1 + G T UCEC 219559289 + 219559269 219559309 41 GGACAGCTTGGTCAGCAAGGGGTGACCTTTGACCTCCAGCC GGACAGCTTGGTCAGCAAGTGGTGACCTTTGACCTCCAGCC < 41bp 0.365939525610632 0.72320127244093 NA NA prediction 0.446402544881859 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219559289 chr2:219559288 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24860 0 0 1 0 1 STK36 chr2:219559358 5'GT 219559358 Upstream 71bp 22787 chr22 21344734 21344734 1 + G T LUAD 21344735 + 21344715 21344755 41 TCCCCGTGGCTGTGTGCCGGGACAAGATGTTTGTATTCTCT TCCCCGTGGCTGTGTGCCGTGACAAGATGTTTGTATTCTCT < 41bp 0.372406598305814 0.723165269354798 NA NA prediction 0.446330538709596 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21344735 chr22:21344734 synonymous SNV . 0 20 hm7G_associated_SNPs_24868 0 0 1 0 2 LZTR1 chr22:21344675 3'AG 21344675 Downstream 60bp 22788 chr22 21344734 21344734 1 + G T LUAD 21344735 + 21344715 21344755 41 TCCCCGTGGCTGTGTGCCGGGACAAGATGTTTGTATTCTCT TCCCCGTGGCTGTGTGCCGTGACAAGATGTTTGTATTCTCT < 41bp 0.372406598305814 0.723165269354798 NA NA prediction 0.446330538709596 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21344735 chr22:21344734 synonymous SNV . 0 20 hm7G_associated_SNPs_24868 0 0 1 0 2 LZTR1 chr22:21344814 5'GT 21344814 Upstream 81bp 22789 chr13 96212522 96212522 1 + G T LUSC 96212523 + 96212503 96212543 41 AAGCTAAAATTGCTTGTTTGGCTGGGATTGTATTCATACTG AAGCTAAAATTGCTTGTTTTGCTGGGATTGTATTCATACTG < 41bp 0.391442031164871 0.723150423587383 NA NA prediction 0.446300847174767 Functional Gain - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96212523 chr13:96212522 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24869 0 0 0 0 1 CLDN10 chr13:96212547 5'GT 96212547 Upstream 26bp 22790 chr14 56645084 56645084 1 + G T OV 56645085 + 56645065 56645105 41 TTTACCCAATGGAGATAGAGGACGGAGGAAAAGTAGATTTG TTTACCCAATGGAGATAGATGACGGAGGAAAAGTAGATTTG < 41bp 0.665026768170704 0.888175165182657 NA NA prediction 0.446296794023908 Functional Gain - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56645085 chr14:56645084 stopgain 0.958 1 20 hm7G_associated_SNPs_24870 0 0 0 0 2 PELI2 chr14:56645053 3'AG 56645053 Downstream 32bp 22791 chr14 56645084 56645084 1 + G T OV 56645085 + 56645065 56645105 41 TTTACCCAATGGAGATAGAGGACGGAGGAAAAGTAGATTTG TTTACCCAATGGAGATAGATGACGGAGGAAAAGTAGATTTG < 41bp 0.665026768170704 0.888175165182657 NA NA prediction 0.446296794023908 Functional Gain - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56645085 chr14:56645084 stopgain 0.958 1 20 hm7G_associated_SNPs_24870 0 0 0 0 2 PELI2 chr14:56645182 5'GT 56645182 Upstream 99bp 22792 chr7 55493032 55493032 1 + G T COAD 55493033 + 55493013 55493053 41 TTGCTGCGGAAGGGCTACGGGATATGCCATGGGACTGCTGG TTGCTGCGGAAGGGCTACGTGATATGCCATGGGACTGCTGG < 41bp 0.673980725429598 0.897124649128509 NA NA prediction 0.446287847397821 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55493033 chr7:55493032 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_24872 0 0 1 0 2 LANCL2 chr7:55492947 3'AG 55492947 Downstream 86bp 22793 chr7 55493032 55493032 1 + G T COAD 55493033 + 55493013 55493053 41 TTGCTGCGGAAGGGCTACGGGATATGCCATGGGACTGCTGG TTGCTGCGGAAGGGCTACGTGATATGCCATGGGACTGCTGG < 41bp 0.673980725429598 0.897124649128509 NA NA prediction 0.446287847397821 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55493033 chr7:55493032 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_24872 0 0 1 0 2 LANCL2 chr7:55493123 5'GT 55493123 Upstream 92bp 22794 chr1 120906333 120906333 1 + G T LUAD 120906334 + 120906314 120906354 41 CATCCCGTGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCC CATCCCGTGAGATCCAGACTGCCGTGCGCCTGCTGCTGCCC < 41bp 0.644106303957379 0.867230646396837 NA NA prediction 0.446248684878916 Functional Gain - HIST2H2BA ENSG00000223345 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:120906334 chr1:120906333 . . 0 20 hm7G_associated_SNPs_24875 0 0 0 0 1 HIST2H2BA chr1:120906419 5'GT 120906419 Upstream 87bp 22795 chr15 42695968 42695968 1 + G T SARC 42695969 + 42695949 42695989 41 AATACCATCTCCGTGGATCGGCCAGTGGTGAGTGGTTTAGA AATACCATCTCCGTGGATCTGCCAGTGGTGAGTGGTTTAGA < 41bp 0.660708648542833 0.883820026143279 NA NA prediction 0.446222755200893 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42695969 chr15:42695968 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24877 0 0 0 0 2 CAPN3 chr15:42695939 3'AG 42695939 Downstream 30bp 22796 chr15 42695968 42695968 1 + G T SARC 42695969 + 42695949 42695989 41 AATACCATCTCCGTGGATCGGCCAGTGGTGAGTGGTTTAGA AATACCATCTCCGTGGATCTGCCAGTGGTGAGTGGTTTAGA < 41bp 0.660708648542833 0.883820026143279 NA NA prediction 0.446222755200893 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42695969 chr15:42695968 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_24877 0 0 0 0 2 CAPN3 chr15:42695975 5'GT 42695975 Upstream 8bp 22797 chr11 125659343 125659343 1 + G T UCEC 125659344 + 125659324 125659364 41 GACAGACCGCTGTAGAAGAGGCTTTGGTGTCTGTACTGCTC GACAGACCGCTGTAGAAGATGCTTTGGTGTCTGTACTGCTC < 41bp 0.673146430962654 0.896248196213437 NA NA prediction 0.446203530501565 Functional Gain - PATE3 ENSG00000236027 CDS Human protein_coding chr11:125659344 chr11:125659343 nonsynonymous SNV 0.940 3 20 hm7G_associated_SNPs_24880 0 0 0 0 1 PATE3 chr11:125659281 3'AG 125659281 Downstream 63bp 22798 chr16 2028356 2028356 1 + G A rs141128447 2028357 + 2028337 2028377 41 ACGTGGAACACCAACTCGCGGCACTGCCACGAGGCCCAGGC ACGTGGAACACCAACTCGCAGCACTGCCACGAGGCCCAGGC < 41bp 0.532714032663627 0.755814476283376 NA NA prediction 0.446200887239498 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2028357 chr16:2028356 nonsynonymous SNV 0.383 4 20 hm7G_associated_SNPs_24881 0 0 1 4 2 TBL3 chr16:2028314 3'AG 2028314 Downstream 43bp 22799 chr16 2028356 2028356 1 + G A rs141128447 2028357 + 2028337 2028377 41 ACGTGGAACACCAACTCGCGGCACTGCCACGAGGCCCAGGC ACGTGGAACACCAACTCGCAGCACTGCCACGAGGCCCAGGC < 41bp 0.532714032663627 0.755814476283376 NA NA prediction 0.446200887239498 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2028357 chr16:2028356 nonsynonymous SNV 0.383 4 20 hm7G_associated_SNPs_24881 0 0 1 4 2 TBL3 chr16:2028316 3'AG 2028316 Downstream 41bp 22800 chr12 9994440 9994440 1 + G T UCEC 9994441 + 9994421 9994461 41 AGAATGGCTCAAATACCAAGGGAAGTGTTGTTATTGGTTCT AGAATGGCTCAAATACCAATGGAAGTGTTGTTATTGGTTCT < 41bp 0.404129570974656 0.723097880188539 NA NA prediction 0.446195760377079 Functional Gain - KLRF1 ENSG00000150045 CDS Human protein_coding chr12:9994441 chr12:9994440 nonsynonymous SNV 0.721 1 20 hm7G_associated_SNPs_24883 0 0 0 0 1 KLRF1 chr12:9994408 3'AG 9994408 Downstream 33bp 22801 chr1 223943318 223943318 1 + G T PRAD 223943319 + 223943299 223943339 41 GGCAGAGGAAGATGGGCGAGGACATGCACACCATCGGCTTT GGCAGAGGAAGATGGGCGATGACATGCACACCATCGGCTTT < 41bp 0.391194974326156 0.723087174974688 NA NA prediction 0.446174349949377 Functional Gain - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223943319 chr1:223943318 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_24884 0 0 1 0 1 CAPN2 chr1:223943351 5'GT 223943351 Upstream 34bp 22802 chr18 8785989 8785989 1 + G A rs550236755 8785990 + 8785970 8786010 41 CCGGCCCGAGGGGACGAGCGGGAGAGCCTGCGCCTCCGAGC CCGGCCCGAGGGGACGAGCAGGAGAGCCTGCGCCTCCGAGC < 41bp 0.50578898483926 0.728869638303136 NA NA prediction 0.446161306927751 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8785990 chr18:8785989 nonsynonymous SNV 0.440 0 20 hm7G_associated_SNPs_24885 0 0 1 0 1 MTCL1 chr18:8785934 3'AG 8785934 Downstream 56bp 22803 chr11 65618318 65618318 1 + G T COAD 65618319 + 65618299 65618339 41 CCTCATCACGGGCATGTCAGGGCTCAAGGTAACCCCTGGTG CCTCATCACGGGCATGTCATGGCTCAAGGTAACCCCTGGTG < 41bp 0.679196284767534 0.902258373114246 NA NA prediction 0.446124176693425 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65618319 chr11:65618318 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_24888 0 0 0 0 2 SNX32 chr11:65618222 3'AG 65618222 Downstream 97bp 22804 chr11 65618318 65618318 1 + G T COAD 65618319 + 65618299 65618339 41 CCTCATCACGGGCATGTCAGGGCTCAAGGTAACCCCTGGTG CCTCATCACGGGCATGTCATGGCTCAAGGTAACCCCTGGTG < 41bp 0.679196284767534 0.902258373114246 NA NA prediction 0.446124176693425 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65618319 chr11:65618318 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_24888 0 0 0 0 2 SNX32 chr11:65618326 5'GT 65618326 Upstream 9bp 22805 chr17 43323313 43323313 1 + G A UCEC 43323314 + 43323294 43323334 41 AGGCAGGCGCTGATACCCCGGGCAAAGGGGAGCCCCCAGCA AGGCAGGCGCTGATACCCCAGGCAAAGGGGAGCCCCCAGCA < 41bp 0.498322257150642 0.723052009500344 NA NA prediction 0.446104019000688 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323314 chr17:43323313 synonymous SNV . 0 20 hm7G_associated_SNPs_24889 0 0 0 0 2 FMNL1 chr17:43323245 3'AG 43323245 Downstream 69bp 22806 chr17 43323313 43323313 1 + G A UCEC 43323314 + 43323294 43323334 41 AGGCAGGCGCTGATACCCCGGGCAAAGGGGAGCCCCCAGCA AGGCAGGCGCTGATACCCCAGGCAAAGGGGAGCCCCCAGCA < 41bp 0.498322257150642 0.723052009500344 NA NA prediction 0.446104019000688 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323314 chr17:43323313 synonymous SNV . 0 20 hm7G_associated_SNPs_24889 0 0 0 0 2 FMNL1 chr17:43323340 5'GT 43323340 Upstream 28bp 22807 chr7 107335068 107335068 1 + G T LUSC 107335069 + 107335049 107335089 41 TCTGTCTCTCTTGGCAGTCGGTCTTGGCAGCTGTTGTAATT TCTGTCTCTCTTGGCAGTCTGTCTTGGCAGCTGTTGTAATT < 41bp 0.402930334779221 0.723050037332885 NA NA prediction 0.446100074665769 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107335069 chr7:107335068 synonymous SNV . 0 20 hm7G_associated_SNPs_24890 0 0 0 0 2 SLC26A4 chr7:107335066 3'AG 107335066 Downstream 3bp 22808 chr7 107335068 107335068 1 + G T LUSC 107335069 + 107335049 107335089 41 TCTGTCTCTCTTGGCAGTCGGTCTTGGCAGCTGTTGTAATT TCTGTCTCTCTTGGCAGTCTGTCTTGGCAGCTGTTGTAATT < 41bp 0.402930334779221 0.723050037332885 NA NA prediction 0.446100074665769 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107335069 chr7:107335068 synonymous SNV . 0 20 hm7G_associated_SNPs_24890 0 0 0 0 2 SLC26A4 chr7:107335161 5'GT 107335161 Upstream 94bp 22809 chr14 74041690 74041690 1 + G T TGCT 74041691 + 74041671 74041711 41 CATGGCCTCTTTCCTGAAGGGCATCACGGCTGCTGTCGTCA CATGGCCTCTTTCCTGAAGTGCATCACGGCTGCTGTCGTCA < 41bp 0.671526019743403 0.894555831102918 NA NA prediction 0.446059622719032 Functional Gain - ACOT2 ENSG00000119673 CDS Human protein_coding chr14:74041691 chr14:74041690 nonsynonymous SNV 0.497 3 20 hm7G_associated_SNPs_24891 0 0 0 0 1 ACOT2 chr14:74041612 3'AG 74041612 Downstream 79bp 22810 chr16 10850621 10850621 1 + G T UCEC 10850622 + 10850602 10850642 41 ATGATGCTGTTATCTGGAGGGGACCCAAGAAAAACGGTTTG ATGATGCTGTTATCTGGAGTGGACCCAAGAAAAACGGTTTG < 41bp 0.674035499269644 0.897054131798177 NA NA prediction 0.446037265057066 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10850622 chr16:10850621 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24892 0 0 0 0 2 NUBP1 chr16:10850547 3'AG 10850547 Downstream 75bp 22811 chr16 10850621 10850621 1 + G T UCEC 10850622 + 10850602 10850642 41 ATGATGCTGTTATCTGGAGGGGACCCAAGAAAAACGGTTTG ATGATGCTGTTATCTGGAGTGGACCCAAGAAAAACGGTTTG < 41bp 0.674035499269644 0.897054131798177 NA NA prediction 0.446037265057066 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10850622 chr16:10850621 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24892 0 0 0 0 2 NUBP1 chr16:10850637 5'GT 10850637 Upstream 17bp 22812 chr19 17611139 17611139 1 + G A PRAD 17611140 + 17611120 17611160 41 CCCCACGTGTACCCCATCCGGCTGGTGAAGGTCAATGAGGA CCCCACGTGTACCCCATCCAGCTGGTGAAGGTCAATGAGGA < 41bp 0.510210319464014 0.733224117471582 NA NA prediction 0.446027596015136 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17611140 chr19:17611139 nonsynonymous SNV 0.806 2 20 hm7G_associated_SNPs_24893 0 0 0 0 2 SLC27A1 chr19:17611087 3'AG 17611087 Downstream 53bp 22813 chr19 17611139 17611139 1 + G A PRAD 17611140 + 17611120 17611160 41 CCCCACGTGTACCCCATCCGGCTGGTGAAGGTCAATGAGGA CCCCACGTGTACCCCATCCAGCTGGTGAAGGTCAATGAGGA < 41bp 0.510210319464014 0.733224117471582 NA NA prediction 0.446027596015136 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17611140 chr19:17611139 nonsynonymous SNV 0.806 2 20 hm7G_associated_SNPs_24893 0 0 0 0 2 SLC27A1 chr19:17611213 5'GT 17611213 Upstream 75bp 22814 chr19 36368696 36368696 1 + G A UCEC 36368697 + 36368677 36368717 41 GGGGCAGCAGCGAGGACAAGGGTGGGCTGCAGCCTCCAGAT GGGGCAGCAGCGAGGACAAAGGTGGGCTGCAGCCTCCAGAT < 41bp 0.508473391982322 0.731473237746503 NA NA prediction 0.445999691528362 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36368697 chr19:36368696 synonymous SNV . 0 20 hm7G_associated_SNPs_24894 0 0 1 0 2 APLP1 chr19:36368620 3'AG 36368620 Downstream 77bp 22815 chr19 36368696 36368696 1 + G A UCEC 36368697 + 36368677 36368717 41 GGGGCAGCAGCGAGGACAAGGGTGGGCTGCAGCCTCCAGAT GGGGCAGCAGCGAGGACAAAGGTGGGCTGCAGCCTCCAGAT < 41bp 0.508473391982322 0.731473237746503 NA NA prediction 0.445999691528362 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36368697 chr19:36368696 synonymous SNV . 0 20 hm7G_associated_SNPs_24894 0 0 1 0 2 APLP1 chr19:36368727 5'GT 36368727 Upstream 32bp 22816 chr4 88534991 88534991 1 + G T UCEC 88534992 + 88534972 88535012 41 AAATATTACCAAAGAAGTTGGGAAAGGCAACGAAGGTAAAG AAATATTACCAAAGAAGTTTGGAAAGGCAACGAAGGTAAAG < 41bp 0.646888607843693 0.869864058942429 NA NA prediction 0.445950902197472 Functional Gain - DSPP ENSG00000152591 CDS Human protein_coding chr4:88534992 chr4:88534991 nonsynonymous SNV 0.023 2 20 hm7G_associated_SNPs_24897 0 0 0 0 1 DSPP chr4:88534937 3'AG 88534937 Downstream 55bp 22817 chr8 38103301 38103301 1 + G T ESCA 38103302 + 38103282 38103322 41 CCCAGCATTAACCGCCTCAGGCACTTCACCAATGACACAAT CCCAGCATTAACCGCCTCATGCACTTCACCAATGACACAAT < 41bp 0.376900715224773 0.72297404021261 NA NA prediction 0.44594808042522 Functional Gain - DDHD2 ENSG00000085788 CDS Human protein_coding chr8:38103302 chr8:38103301 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_24899 0 0 1 0 1 DDHD2 chr8:38103260 3'AG 38103260 Downstream 42bp 22818 chr2 73437954 73437954 1 + G T UCEC 73437955 + 73437935 73437975 41 CAGAAGCAGCAAAAGCTGAGGGCAGCAGTTACATCTGCCGA CAGAAGCAGCAAAAGCTGATGGCAGCAGTTACATCTGCCGA < 41bp 0.661423152474391 0.884392936149849 NA NA prediction 0.445939567350916 Functional Gain - NOTO ENSG00000214513 CDS Human protein_coding chr2:73437955 chr2:73437954 nonsynonymous SNV 0.149 2 20 hm7G_associated_SNPs_24900 0 0 0 0 1 NOTO chr2:73437899 3'AG 73437899 Downstream 56bp 22819 chr19 36369538 36369538 1 + G T BRCA 36369539 + 36369519 36369559 41 AAGAGAAGATGAACCCGCTGGAACAGTATGAGCGAAAGGTA AAGAGAAGATGAACCCGCTTGAACAGTATGAGCGAAAGGTA < 41bp 0.67701393181366 0.899978348241302 NA NA prediction 0.445928832855283 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36369539 chr19:36369538 synonymous SNV . 0 20 hm7G_associated_SNPs_24902 0 0 0 0 1 APLP1 chr19:36369556 5'GT 36369556 Upstream 19bp 22820 chr9 12704606 12704606 1 + G T LUAD 12704607 + 12704587 12704627 41 TCTATTCCTGAATGGAACAGGGGGACAAACCCATTTGTCTC TCTATTCCTGAATGGAACATGGGGACAAACCCATTTGTCTC < 41bp 0.662087592478213 0.885037354508523 NA NA prediction 0.44589952406062 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12704607 chr9:12704606 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_24905 0 0 0 0 2 TYRP1 chr9:12704526 3'AG 12704526 Downstream 81bp 22821 chr9 12704606 12704606 1 + G T LUAD 12704607 + 12704587 12704627 41 TCTATTCCTGAATGGAACAGGGGGACAAACCCATTTGTCTC TCTATTCCTGAATGGAACATGGGGACAAACCCATTTGTCTC < 41bp 0.662087592478213 0.885037354508523 NA NA prediction 0.44589952406062 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12704607 chr9:12704606 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_24905 0 0 0 0 2 TYRP1 chr9:12704705 5'GT 12704705 Upstream 100bp 22822 chr19 13084218 13084218 1 + G A STAD 13084219 + 13084199 13084239 41 CCAGGTGTTCTCCCGGCCCGGCTGCTCAGCCATACGCCTCC CCAGGTGTTCTCCCGGCCCAGCTGCTCAGCCATACGCCTCC < 41bp 0.5118833156032 0.734829403868307 NA NA prediction 0.445892176530214 Functional Gain - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13084219 chr19:13084218 nonsynonymous SNV 0.056 3 20 hm7G_associated_SNPs_24906 0 0 0 0 1 DAND5 chr19:13084203 3'AG 13084203 Downstream 16bp 22823 chr20 44640884 44640884 1 + G T LUSC 44640885 + 44640865 44640905 41 AGCGAGGGCCGCGGAGATGGGCGCCTCTGGTGCGCTACCAC AGCGAGGGCCGCGGAGATGTGCGCCTCTGGTGCGCTACCAC < 41bp 0.685262950094452 0.908209013150528 NA NA prediction 0.445892126112152 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640885 chr20:44640884 nonsynonymous SNV 0.825 4 20 hm7G_associated_SNPs_24907 0 0 0 0 1 MMP9 chr20:44640952 5'GT 44640952 Upstream 69bp 22824 chr19 35551309 35551309 1 + G A SKCM 35551310 + 35551290 35551330 41 GAGGCCGGGACACCAGCTTGGGCCGGTGGCCGTGGCAAGTC GAGGCCGGGACACCAGCTTAGGCCGGTGGCCGTGGCAAGTC < 41bp 0.531304398582129 0.754243856813514 NA NA prediction 0.44587891646277 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35551310 chr19:35551309 synonymous SNV . 0 20 hm7G_associated_SNPs_24908 0 0 1 0 1 HPN chr19:35551251 3'AG 35551251 Downstream 59bp 22825 chr2 73901017 73901017 1 + G T COAD 73901018 + 73900998 73901038 41 GTCTGAAGTTAATAGTCCAGGAGAGAAAGCTGCAGAGCATG GTCTGAAGTTAATAGTCCATGAGAGAAAGCTGCAGAGCATG < 41bp 0.647313722385916 0.870249525615891 NA NA prediction 0.445871606459949 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73901018 chr2:73901017 . . 0 20 hm7G_associated_SNPs_24909 0 0 0 0 1 ALMS1P1 chr2:73900940 3'AG 73900940 Downstream 78bp 22826 chr7 5327577 5327577 1 + G A LUAD 5327578 + 5327558 5327598 41 GGAGGCGGCTCAGGGCCAGGGCCTTAGGGCCAGGGGCGTCC GGAGGCGGCTCAGGGCCAGAGCCTTAGGGCCAGGGGCGTCC < 41bp 0.553004675005132 0.775925208569008 NA NA prediction 0.445841067127752 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5327578 chr7:5327577 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_24911 0 0 0 0 1 SLC29A4 chr7:5327616 5'GT 5327616 Upstream 40bp 22827 chr19 1255692 1255692 1 + G A rs61744742 1255693 + 1255673 1255713 41 TCCGCATGTGCAAGCCCCCGGGTGAGTGGCCACCCTCGGGG TCCGCATGTGCAAGCCCCCAGGTGAGTGGCCACCCTCGGGG < 41bp 0.512089972862482 0.73500694290923 NA NA prediction 0.445833940093495 Functional Gain - MIDN ENSG00000167470 CDS Human protein_coding chr19:1255693 chr19:1255692 synonymous SNV . 0 20 hm7G_associated_SNPs_24912 0 0 1 0 1 MIDN chr19:1255693 5'GT 1255693 Upstream 2bp 22828 chr9 131730939 131730939 1 + G T LUAD 131730940 + 131730920 131730960 41 GAGCAAGGATTTGGTAGTAGGCAGACCAATAGGCACCTGGT GAGCAAGGATTTGGTAGTATGCAGACCAATAGGCACCTGGT < 41bp 0.670905366548321 0.893808575445855 NA NA prediction 0.445806417795068 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131730940 chr9:131730939 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_24915 0 0 1 0 1 NUP188 chr9:131730996 5'GT 131730996 Upstream 58bp 22829 chr14 74041618 74041618 1 + G T UCEC 74041619 + 74041599 74041639 41 GTCCCTTTCTCAGGTAAAAGGTCCAGGAGTTGGGCTGCTTG GTCCCTTTCTCAGGTAAAATGTCCAGGAGTTGGGCTGCTTG < 41bp 0.656848935438161 0.879727652007852 NA NA prediction 0.445757433139381 Functional Gain - ACOT2 ENSG00000119673 CDS Human protein_coding chr14:74041619 chr14:74041618 nonsynonymous SNV 0.492 4 20 hm7G_associated_SNPs_24917 0 0 0 0 1 ACOT2 chr14:74041612 3'AG 74041612 Downstream 7bp 22830 chr22 25598671 25598671 1 + G T UCEC 25598672 + 25598652 25598692 41 CGAACTAGAGAACTTCCAAGGCAAACGCTGCGAGCTCTCGG CGAACTAGAGAACTTCCAATGCAAACGCTGCGAGCTCTCGG < 41bp 0.680404400317643 0.903280587471882 NA NA prediction 0.445752374308478 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598672 chr22:25598671 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_24919 0 0 0 0 2 CRYBB3 chr22:25598641 3'AG 25598641 Downstream 31bp 22831 chr22 25598671 25598671 1 + G T UCEC 25598672 + 25598652 25598692 41 CGAACTAGAGAACTTCCAAGGCAAACGCTGCGAGCTCTCGG CGAACTAGAGAACTTCCAATGCAAACGCTGCGAGCTCTCGG < 41bp 0.680404400317643 0.903280587471882 NA NA prediction 0.445752374308478 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598672 chr22:25598671 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_24919 0 0 0 0 2 CRYBB3 chr22:25598759 5'GT 25598759 Upstream 89bp 22832 chr20 2293656 2293656 1 + G T LUSC 2293657 + 2293637 2293677 41 GACCCCAAATACGTTGGCCGGGTGCTGAGTGCCATGGTGAG GACCCCAAATACGTTGGCCTGGTGCTGAGTGCCATGGTGAG < 41bp 0.674376093948106 0.897251596364012 NA NA prediction 0.445751004831812 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2293657 chr20:2293656 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_24920 0 0 0 0 1 TGM3 chr20:2293672 5'GT 2293672 Upstream 17bp 22833 chr10 93713536 93713536 1 + G T PAAD 93713537 + 93713517 93713557 41 TGACTCAGAGTTTCGAGCAGGAATGAGCAATAGACAAAAGA TGACTCAGAGTTTCGAGCATGAATGAGCAATAGACAAAAGA < 41bp 0.405327424806322 0.7228746548596 NA NA prediction 0.445749309719201 Functional Gain - BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93713537 chr10:93713536 stopgain 1.000 1 20 hm7G_associated_SNPs_24921 0 0 1 2 2 BTAF1 chr10:93713494 3'AG 93713494 Downstream 43bp 22834 chr10 93713536 93713536 1 + G T PAAD 93713537 + 93713517 93713557 41 TGACTCAGAGTTTCGAGCAGGAATGAGCAATAGACAAAAGA TGACTCAGAGTTTCGAGCATGAATGAGCAATAGACAAAAGA < 41bp 0.405327424806322 0.7228746548596 NA NA prediction 0.445749309719201 Functional Gain - BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93713537 chr10:93713536 stopgain 1.000 1 20 hm7G_associated_SNPs_24921 0 0 1 2 2 BTAF1 chr10:93713630 5'GT 93713630 Upstream 95bp 22835 chr10 104154305 104154305 1 + G T rs570589161 104154306 + 104154286 104154326 41 CAGGCGAGGTGTCGCGACCGGTCCCAGGTGGGTCGGGCGCG CAGGCGAGGTGTCGCGACCTGTCCCAGGTGGGTCGGGCGCG < 41bp 0.562605124789993 0.785469760613891 NA NA prediction 0.445729271647796 Functional Gain - NFKB2 ENSG00000077150 UTR5 Human protein_coding chr10:104154306 chr10:104154305 . . 0 20 hm7G_associated_SNPs_24923 0 0 0 0 1 NFKB2 chr10:104154357 5'GT 104154357 Upstream 53bp 22836 chr17 73565401 73565401 1 + G A LUSC 73565402 + 73565382 73565422 41 GGCTGTGGCAGGCACGGCAGGGCAGGTAGCAGGCTGGGCTG GGCTGTGGCAGGCACGGCAAGGCAGGTAGCAGGCTGGGCTG < 41bp 0.526902310393575 0.749764265069388 NA NA prediction 0.445723909351626 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73565402 chr17:73565401 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24924 0 0 1 0 2 LLGL2 chr17:73565302 3'AG 73565302 Downstream 100bp 22837 chr17 73565401 73565401 1 + G A LUSC 73565402 + 73565382 73565422 41 GGCTGTGGCAGGCACGGCAGGGCAGGTAGCAGGCTGGGCTG GGCTGTGGCAGGCACGGCAAGGCAGGTAGCAGGCTGGGCTG < 41bp 0.526902310393575 0.749764265069388 NA NA prediction 0.445723909351626 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73565402 chr17:73565401 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_24924 0 0 1 0 2 LLGL2 chr17:73565406 5'GT 73565406 Upstream 6bp 22838 chr5 5242222 5242222 1 + G A SKCM 5242223 + 5242203 5242243 41 AATACTCCATGCCTCGCTTGGGGACCGAGAAGCAGCCCCCT AATACTCCATGCCTCGCTTAGGGACCGAGAAGCAGCCCCCT < 41bp 0.49727140768665 0.722837382082967 NA NA prediction 0.445674764165933 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5242223 chr5:5242222 synonymous SNV . 0 20 hm7G_associated_SNPs_24929 0 0 0 0 2 ADAMTS16 chr5:5242166 3'AG 5242166 Downstream 57bp 22839 chr5 5242222 5242222 1 + G A SKCM 5242223 + 5242203 5242243 41 AATACTCCATGCCTCGCTTGGGGACCGAGAAGCAGCCCCCT AATACTCCATGCCTCGCTTAGGGACCGAGAAGCAGCCCCCT < 41bp 0.49727140768665 0.722837382082967 NA NA prediction 0.445674764165933 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5242223 chr5:5242222 synonymous SNV . 0 20 hm7G_associated_SNPs_24929 0 0 0 0 2 ADAMTS16 chr5:5242304 5'GT 5242304 Upstream 83bp 22840 chr11 6232186 6232186 1 + G T COAD 6232187 + 6232167 6232207 41 CCCTCCACCAGGAGCCCAGGGTGGGGGCCCCAGGGACCCCG CCCTCCACCAGGAGCCCAGTGTGGGGGCCCCAGGGACCCCG < 41bp 0.663567426071547 0.88639753187118 NA NA prediction 0.445660211599266 Functional Gain - C11orf42 ENSG00000180878 CDS Human protein_coding chr11:6232187 chr11:6232186 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_24931 0 0 0 0 1 C11orf42 chr11:6232142 3'AG 6232142 Downstream 45bp 22841 chr21 45535655 45535655 1 + G A rs143393519 45535656 + 45535636 45535676 41 TGCGGCTGAAGCCCCCTGCGGGCTGGAAAGCAGACCTGTTG TGCGGCTGAAGCCCCCTGCAGGCTGGAAAGCAGACCTGTTG < 41bp 0.514804379437431 0.737618337405097 NA NA prediction 0.445627915935332 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45535656 chr21:45535655 synonymous SNV . 0 20 hm7G_associated_SNPs_24933 0 0 0 0 1 PWP2 chr21:45535572 3'AG 45535572 Downstream 84bp 22842 chr17 56271342 56271342 1 + G A SKCM 56271343 + 56271323 56271363 41 GGAGGAGACCCTTGCTAGGGGCCTCCAACCAGGCTCTGGCT GGAGGAGACCCTTGCTAGGAGCCTCCAACCAGGCTCTGGCT < 41bp 0.53653330719066 0.759344001650678 NA NA prediction 0.445621388920036 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56271343 chr17:56271342 synonymous SNV . 0 20 hm7G_associated_SNPs_24935 0 0 0 0 1 EPX chr17:56271324 3'AG 56271324 Downstream 19bp 22843 chr12 67675717 67675717 1 + G T LUAD 67675718 + 67675698 67675738 41 CTACAAATGATTTGATGACGGAACTGCAGAAAGATTCCATC CTACAAATGATTTGATGACTGAACTGCAGAAAGATTCCATC < 41bp 0.658246515451429 0.881053927207752 NA NA prediction 0.445614823512646 Functional Gain - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67675718 chr12:67675717 synonymous SNV . 0 20 hm7G_associated_SNPs_24936 0 0 1 0 1 CAND1 chr12:67675690 3'AG 67675690 Downstream 28bp 22844 chr8 145096185 145096185 1 + G A SKCM 145096186 + 145096166 145096206 41 GTGAGATTGCCTTCCAGCTGGACCGCAGGATCCTGTCCAGC GTGAGATTGCCTTCCAGCTAGACCGCAGGATCCTGTCCAGC < 41bp 0.501378383472785 0.72418128874621 NA NA prediction 0.445605810546851 Functional Gain - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145096186 chr8:145096185 synonymous SNV . 0 20 hm7G_associated_SNPs_24937 0 0 0 0 1 SPATC1 chr8:145096272 5'GT 145096272 Upstream 88bp 22845 chr7 12727890 12727890 1 + G T COAD 12727891 + 12727871 12727911 41 CACCTGGAAATGGGGAATGGGCTGTCAGACCAGACTTCTAT CACCTGGAAATGGGGAATGTGCTGTCAGACCAGACTTCTAT < 41bp 0.650010170621322 0.872807829118412 NA NA prediction 0.44559531699418 Functional Gain - ARL4A ENSG00000122644 CDS Human protein_coding chr7:12727891 chr7:12727890 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_24939 0 0 1 0 2 ARL4A chr7:12727791 3'AG 12727791 Downstream 100bp 22846 chr7 12727890 12727890 1 + G T COAD 12727891 + 12727871 12727911 41 CACCTGGAAATGGGGAATGGGCTGTCAGACCAGACTTCTAT CACCTGGAAATGGGGAATGTGCTGTCAGACCAGACTTCTAT < 41bp 0.650010170621322 0.872807829118412 NA NA prediction 0.44559531699418 Functional Gain - ARL4A ENSG00000122644 CDS Human protein_coding chr7:12727891 chr7:12727890 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_24939 0 0 1 0 2 ARL4A chr7:12727794 3'AG 12727794 Downstream 97bp 22847 chr3 52557922 52557922 1 + G T SKCM 52557923 + 52557903 52557943 41 CTGAAGCCCCACCTGTGGCGGCAGGCGTGGGGGCTGTGCTT CTGAAGCCCCACCTGTGGCTGCAGGCGTGGGGGCTGTGCTT < 41bp 0.396087235132154 0.722797592153982 NA NA prediction 0.445595184307964 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52557923 chr3:52557922 synonymous SNV . 0 20 hm7G_associated_SNPs_24940 0 0 0 0 1 STAB1 chr3:52557887 3'AG 52557887 Downstream 36bp 22848 chr1 154516515 154516515 1 + G A SKCM 154516516 + 154516496 154516536 41 ACTCATCCATAGCGTCCGTGGGGAGGCGGGGCTGCTGGTGA ACTCATCCATAGCGTCCGTAGGGAGGCGGGGCTGCTGGTGA < 41bp 0.516615537422415 0.739403719673291 NA NA prediction 0.445576364501752 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516516 chr1:154516515 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_24943 0 0 0 0 2 TDRD10 chr1:154516439 3'AG 154516439 Downstream 77bp 22849 chr1 154516515 154516515 1 + G A SKCM 154516516 + 154516496 154516536 41 ACTCATCCATAGCGTCCGTGGGGAGGCGGGGCTGCTGGTGA ACTCATCCATAGCGTCCGTAGGGAGGCGGGGCTGCTGGTGA < 41bp 0.516615537422415 0.739403719673291 NA NA prediction 0.445576364501752 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516516 chr1:154516515 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_24943 0 0 0 0 2 TDRD10 chr1:154516586 5'GT 154516586 Upstream 72bp 22850 chr3 42569500 42569500 1 + G T SARC 42569501 + 42569481 42569521 41 AGGAAGCTCCACTGCACGCGGAACTACATCCACATGCACCT AGGAAGCTCCACTGCACGCTGAACTACATCCACATGCACCT < 41bp 0.377649228788842 0.722783362031767 NA NA prediction 0.445566724063533 Functional Gain - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42569501 chr3:42569500 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_24944 0 0 0 0 1 VIPR1 chr3:42569483 3'AG 42569483 Downstream 18bp 22851 chr1 1262701 1262701 1 + G A rs199828648 1262702 + 1262682 1262722 41 CGGATCATGGAGCGCCTCAGGGGCGGCCCGCAGAGCGAGCA CGGATCATGGAGCGCCTCAAGGGCGGCCCGCAGAGCGAGCA < 41bp 0.511182738746108 0.733956727832728 NA NA prediction 0.44554797817324 Functional Gain - CPTP ENSG00000224051 CDS Human protein_coding chr1:1262702 chr1:1262701 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_24945 0 0 1 0 1 CPTP chr1:1262621 3'AG 1262621 Downstream 81bp 22852 chr20 61950841 61950841 1 + G A rs202080315 61950842 + 61950822 61950862 41 CACCCCTTCCCTGGCAGCCGGGAAGAAGTCCCTGACCTACT CACCCCTTCCCTGGCAGCCAGGAAGAAGTCCCTGACCTACT < 41bp 0.500126283633376 0.722895156035057 NA NA prediction 0.445537744803362 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61950842 chr20:61950841 nonsynonymous SNV 0.055 2 20 hm7G_associated_SNPs_24946 0 0 0 0 1 COL20A1 chr20:61950839 3'AG 61950839 Downstream 3bp 22853 chr17 29249967 29249967 1 + G A SKCM 29249968 + 29249948 29249988 41 TCCCCTGCAGATCCCGACTGGGCCTCTTACAAGCTGGGGAT TCCCCTGCAGATCCCGACTAGGCCTCTTACAAGCTGGGGAT < 41bp 0.516660787103007 0.739409969846565 NA NA prediction 0.445498365487115 Functional Gain - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29249968 chr17:29249967 stopgain 1.000 0 20 hm7G_associated_SNPs_24949 0 0 0 0 1 ADAP2 chr17:29249958 3'AG 29249958 Downstream 10bp 22854 chr21 43962541 43962541 1 + G A HNSC 43962542 + 43962522 43962562 41 CGGGCTGGTGCAGACCACCGGCTGGCCCAGCGTCGTCACCT CGGGCTGGTGCAGACCACCAGCTGGCCCAGCGTCGTCACCT < 41bp 0.519825182412569 0.742550947587698 NA NA prediction 0.445451530350259 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43962542 chr21:43962541 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_24951 0 0 0 0 2 SLC37A1 chr21:43962514 3'AG 43962514 Downstream 28bp 22855 chr21 43962541 43962541 1 + G A HNSC 43962542 + 43962522 43962562 41 CGGGCTGGTGCAGACCACCGGCTGGCCCAGCGTCGTCACCT CGGGCTGGTGCAGACCACCAGCTGGCCCAGCGTCGTCACCT < 41bp 0.519825182412569 0.742550947587698 NA NA prediction 0.445451530350259 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43962542 chr21:43962541 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_24951 0 0 0 0 2 SLC37A1 chr21:43962590 5'GT 43962590 Upstream 50bp 22856 chr17 78201679 78201679 1 + G A LUSC 78201680 + 78201660 78201700 41 CTGGTGCTGAAGCTGATGCGGGACCACGTGCCTCCCGTCCA CTGGTGCTGAAGCTGATGCAGGACCACGTGCCTCCCGTCCA < 41bp 0.509377763270486 0.732091041975536 NA NA prediction 0.4454265574101 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78201680 chr17:78201679 nonsynonymous SNV 0.707 1 20 hm7G_associated_SNPs_24953 0 0 1 0 1 SLC26A11 chr17:78201759 5'GT 78201759 Upstream 81bp 22857 chr17 42855088 42855088 1 + G A rs202023224 42855089 + 42855069 42855109 41 CCACGTGCAGCTGGCGGACGGCTCTGACCTGAGCTATGTGG CCACGTGCAGCTGGCGGACAGCTCTGACCTGAGCTATGTGG < 41bp 0.514872337141746 0.737581131616769 NA NA prediction 0.445417588950048 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855089 chr17:42855088 nonsynonymous SNV 0.711 3 20 hm7G_associated_SNPs_24955 0 0 0 0 1 ADAM11 chr17:42855063 3'AG 42855063 Downstream 26bp 22858 chr2 219294367 219294367 1 + G A rs554885061 219294368 + 219294348 219294388 41 GTGAGGGAAGTCGCCACACGGCCACTGACACAGGACCTGCT GTGAGGGAAGTCGCCACACAGCCACTGACACAGGACCTGCT < 41bp 0.503881716844028 0.72656933643018 NA NA prediction 0.445375239172304 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294368 chr2:219294367 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_24960 0 0 0 0 1 VIL1 chr2:219294398 5'GT 219294398 Upstream 32bp 22859 chr11 117163895 117163895 1 - C A UCEC 117163894 - 117163874 117163914 41 TTTTCCCTAGATCATTGGAGGTATCGACCACTCGCTGTACA TTTTCCCTAGATCATTGGATGTATCGACCACTCGCTGTACA < 41bp 0.391088946128373 0.722677030924392 NA NA prediction 0.445354061848783 Functional Gain - BACE1 ENSG00000186318 CDS Human protein_coding chr11:117163894 chr11:117163895 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_24964 0 0 0 0 1 BACE1 chr11:117163904 3'AG 117163904 Downstream 10bp 22860 chr5 74655898 74655898 1 + G T LUAD 74655899 + 74655879 74655919 41 TGTGGGACCGTAATGGCTGGGGAATTGTCACTTATGGCAGC TGTGGGACCGTAATGGCTGTGGAATTGTCACTTATGGCAGC < 41bp 0.384717120194158 0.722676327694079 NA NA prediction 0.445352655388158 Functional Gain - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655899 chr5:74655898 nonsynonymous SNV 0.954 4 20 hm7G_associated_SNPs_24966 0 0 1 0 2 HMGCR chr5:74655810 3'AG 74655810 Downstream 89bp 22861 chr5 74655898 74655898 1 + G T LUAD 74655899 + 74655879 74655919 41 TGTGGGACCGTAATGGCTGGGGAATTGTCACTTATGGCAGC TGTGGGACCGTAATGGCTGTGGAATTGTCACTTATGGCAGC < 41bp 0.384717120194158 0.722676327694079 NA NA prediction 0.445352655388158 Functional Gain - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74655899 chr5:74655898 nonsynonymous SNV 0.954 4 20 hm7G_associated_SNPs_24966 0 0 1 0 2 HMGCR chr5:74655964 5'GT 74655964 Upstream 67bp 22862 chr22 22657617 22657617 1 + G T ESCA 22657618 + 22657598 22657638 41 ACGGTGACTTTGAAGACTTGGAAACAGGGGACGTGCACAAG ACGGTGACTTTGAAGACTTTGAAACAGGGGACGTGCACAAG < 41bp 0.660490466675056 0.883148488607899 NA NA prediction 0.445316043865687 Functional Gain - BMS1P20 ENSG00000236850;ENSG00000272779 ncRNA_exonic Human other chr22:22657618 chr22:22657617 . . 0 20 hm7G_associated_SNPs_24967 0 0 1 0 2 BMS1P20 chr22:22657589 3'AG 22657589 Downstream 29bp 22863 chr22 22657617 22657617 1 + G T ESCA 22657618 + 22657598 22657638 41 ACGGTGACTTTGAAGACTTGGAAACAGGGGACGTGCACAAG ACGGTGACTTTGAAGACTTTGAAACAGGGGACGTGCACAAG < 41bp 0.660490466675056 0.883148488607899 NA NA prediction 0.445316043865687 Functional Gain - BMS1P20 ENSG00000236850;ENSG00000272779 ncRNA_exonic Human other chr22:22657618 chr22:22657617 . . 0 20 hm7G_associated_SNPs_24967 0 0 1 0 2 BMS1P20 chr22:22657662 5'GT 22657662 Upstream 46bp 22864 chr1 153659779 153659779 1 + G T BRCA 153659780 + 153659760 153659800 41 CTCAAGATCACCGACTATGGGCTGGAGAGCTTCAGGGACCT CTCAAGATCACCGACTATGTGCTGGAGAGCTTCAGGGACCT < 41bp 0.678647340356191 0.901299188248078 NA NA prediction 0.445303695783773 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153659780 chr1:153659779 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_24969 0 0 0 0 1 NPR1 chr1:153659832 5'GT 153659832 Upstream 54bp 22865 chr21 47419106 47419106 1 + G T LUSC 47419107 + 47419087 47419127 41 AGGAGTCAAAGGAGCAAAGGGGTACCGGGGTCCCGAGGGCC AGGAGTCAAAGGAGCAAAGTGGTACCGGGGTCCCGAGGGCC < 41bp 0.68869304903135 0.911324879373705 NA NA prediction 0.445263660684712 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419107 chr21:47419106 nonsynonymous SNV 0.904 5 20 hm7G_associated_SNPs_24973 0 0 0 0 2 COL6A1 chr21:47419067 3'AG 47419067 Downstream 40bp 22866 chr21 47419106 47419106 1 + G T LUSC 47419107 + 47419087 47419127 41 AGGAGTCAAAGGAGCAAAGGGGTACCGGGGTCCCGAGGGCC AGGAGTCAAAGGAGCAAAGTGGTACCGGGGTCCCGAGGGCC < 41bp 0.68869304903135 0.911324879373705 NA NA prediction 0.445263660684712 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419107 chr21:47419106 nonsynonymous SNV 0.904 5 20 hm7G_associated_SNPs_24973 0 0 0 0 2 COL6A1 chr21:47419132 5'GT 47419132 Upstream 27bp 22867 chr6 80715563 80715563 1 + G T UCEC 80715564 + 80715544 80715584 41 CAGTTTTTTTCTTAGAAATGGAATCCGAGGATTTAAGTGGC CAGTTTTTTTCTTAGAAATTGAATCCGAGGATTTAAGTGGC < 41bp 0.648479367881747 0.871103603294998 NA NA prediction 0.445248470826501 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80715564 chr6:80715563 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24976 0 0 1 0 2 TTK chr6:80715547 3'AG 80715547 Downstream 17bp 22868 chr6 80715563 80715563 1 + G T UCEC 80715564 + 80715544 80715584 41 CAGTTTTTTTCTTAGAAATGGAATCCGAGGATTTAAGTGGC CAGTTTTTTTCTTAGAAATTGAATCCGAGGATTTAAGTGGC < 41bp 0.648479367881747 0.871103603294998 NA NA prediction 0.445248470826501 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80715564 chr6:80715563 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24976 0 0 1 0 2 TTK chr6:80715559 3'AG 80715559 Downstream 5bp 22869 chr20 60737876 60737876 1 + G T LUAD 60737877 + 60737857 60737897 41 CACCTCCATGAGCATCTCTGGGCCCGGCTACAGCCACGCGG CACCTCCATGAGCATCTCTTGGCCCGGCTACAGCCACGCGG < 41bp 0.363679485371979 0.722622430956741 NA NA prediction 0.445244861913482 Functional Gain - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60737877 chr20:60737876 nonsynonymous SNV 0.010 3 20 hm7G_associated_SNPs_24977 0 0 1 0 1 SS18L1 chr20:60737808 3'AG 60737808 Downstream 69bp 22870 chr17 80395108 80395108 1 + G A SKCM 80395109 + 80395089 80395129 41 GGGCAGCCAGTGCCTTCAAGGGTGCCACGGGGCCCAGCCAG GGGCAGCCAGTGCCTTCAAAGGTGCCACGGGGCCCAGCCAG < 41bp 0.537572655780797 0.760191924664967 NA NA prediction 0.445238537768339 Functional Gain - HEXDC ENSG00000169660 CDS Human protein_coding chr17:80395109 chr17:80395108 synonymous SNV . 0 20 hm7G_associated_SNPs_24979 0 0 1 0 1 HEXDC chr17:80395044 3'AG 80395044 Downstream 65bp 22871 chr1 36645310 36645310 1 + G T COAD 36645311 + 36645291 36645331 41 GGTCCCCAGGGCTGCAGAAGGAGGCTGTGCAGAAAGAGGAG GGTCCCCAGGGCTGCAGAATGAGGCTGTGCAGAAAGAGGAG < 41bp 0.677659182885122 0.900275262494298 NA NA prediction 0.445232159218352 Functional Gain - MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645311 chr1:36645310 nonsynonymous SNV 0.733 2 20 hm7G_associated_SNPs_24981 0 0 1 0 2 MAP7D1 chr1:36645267 3'AG 36645267 Downstream 44bp 22872 chr1 36645310 36645310 1 + G T COAD 36645311 + 36645291 36645331 41 GGTCCCCAGGGCTGCAGAAGGAGGCTGTGCAGAAAGAGGAG GGTCCCCAGGGCTGCAGAATGAGGCTGTGCAGAAAGAGGAG < 41bp 0.677659182885122 0.900275262494298 NA NA prediction 0.445232159218352 Functional Gain - MAP7D1 ENSG00000116871 CDS Human protein_coding chr1:36645311 chr1:36645310 nonsynonymous SNV 0.733 2 20 hm7G_associated_SNPs_24981 0 0 1 0 2 MAP7D1 chr1:36645357 5'GT 36645357 Upstream 48bp 22873 chr1 17596805 17596805 1 + G A SKCM 17596806 + 17596786 17596826 41 TGAGGTACCCCGCTTGCATGGGGATGAGGAGCGCTTCTTCG TGAGGTACCCCGCTTGCATAGGGATGAGGAGCGCTTCTTCG < 41bp 0.516441888086826 0.739054523765481 NA NA prediction 0.445225271357309 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17596806 chr1:17596805 nonsynonymous SNV 0.204 4 20 hm7G_associated_SNPs_24982 0 0 0 0 1 PADI3 chr1:17596728 3'AG 17596728 Downstream 78bp 22874 chr20 61588307 61588307 1 + G A rs187226528 61588308 + 61588288 61588328 41 GGTTGTGGGCGGCCACCTCGGGGATCGGTAACTGCCCATCT GGTTGTGGGCGGCCACCTCAGGGATCGGTAACTGCCCATCT < 41bp 0.497813253829329 0.722607330563529 NA NA prediction 0.445214661127057 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61588308 chr20:61588307 nonsynonymous SNV 0.956 2 20 hm7G_associated_SNPs_24984 0 0 1 0 1 SLC17A9 chr20:61588314 5'GT 61588314 Upstream 8bp 22875 chr1 156618411 156618411 1 + G A LUAD 156618412 + 156618392 156618432 41 CTGACATTGGAGGAAGCACGGGCGTACTGCCAGGAGCGGGG CTGACATTGGAGGAAGCACAGGCGTACTGCCAGGAGCGGGG < 41bp 0.513068344332344 0.735674874059661 NA NA prediction 0.445213059454634 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156618412 chr1:156618411 nonsynonymous SNV 0.700 0 20 hm7G_associated_SNPs_24985 0 0 0 0 1 BCAN chr1:156618360 3'AG 156618360 Downstream 52bp 22876 chr7 44100420 44100420 1 + G T STAD 44100421 + 44100401 44100441 41 CCCCGAGAACCTCATCACGGGCATCGAGGTGATCGACGAAG CCCCGAGAACCTCATCACGTGCATCGAGGTGATCGACGAAG < 41bp 0.667787150577602 0.890392588699535 NA NA prediction 0.445210876243867 Functional Gain - DBNL ENSG00000136279 CDS Human protein_coding chr7:44100421 chr7:44100420 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_24986 0 0 1 0 1 DBNL chr7:44100376 3'AG 44100376 Downstream 45bp 22877 chr17 77708875 77708875 1 + G A STAD 77708876 + 77708856 77708896 41 CTCCTTCTTCTACCCGGGCGGGAACGTCACCTACCAAGGGG CTCCTTCTTCTACCCGGGCAGGAACGTCACCTACCAAGGGG < 41bp 0.497965920039236 0.722598228306878 NA NA prediction 0.445196456613757 Functional Gain - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77708876 chr17:77708875 nonsynonymous SNV 0.781 3 20 hm7G_associated_SNPs_24988 0 0 0 0 1 ENPP7 chr17:77708842 3'AG 77708842 Downstream 34bp 22878 chr5 79355572 79355572 1 + G A STAD 79355573 + 79355553 79355593 41 CAAGCACGGTGGTGCCCCCGGCTCCCCCTGCACCGCCAACA CAAGCACGGTGGTGCCCCCAGCTCCCCCTGCACCGCCAACA < 41bp 0.541702745264701 0.764286514432925 NA NA prediction 0.445167538336447 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79355573 chr5:79355572 synonymous SNV . 0 20 hm7G_associated_SNPs_24989 0 0 0 0 1 THBS4 chr5:79355526 3'AG 79355526 Downstream 47bp 22879 chr6 52329891 52329891 1 + G T THCA 52329892 + 52329872 52329912 41 CGTATTGATGTGAGCAAGCGGGAACCACCTCCAGTAAAACA CGTATTGATGTGAGCAAGCTGGAACCACCTCCAGTAAAACA < 41bp 0.383726351485668 0.722577537506165 NA NA prediction 0.445155075012331 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52329892 chr6:52329891 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_24990 0 0 0 0 1 EFHC1 chr6:52329913 5'GT 52329913 Upstream 23bp 22880 chr22 51154141 51154141 1 + G A rs117066889 51154142 + 51154122 51154162 41 CAGGCCCAGAGAAGCTGCCGGGCTCCTTGCGGAAGGGGATT CAGGCCCAGAGAAGCTGCCAGGCTCCTTGCGGAAGGGGATT < 41bp 0.515675294128768 0.738237998661794 NA NA prediction 0.445125409066052 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51154142 chr22:51154141 synonymous SNV . 0 20 hm7G_associated_SNPs_24992 0 0 1 0 2 SHANK3 chr22:51154097 3'AG 51154097 Downstream 45bp 22881 chr22 51154141 51154141 1 + G A rs117066889 51154142 + 51154122 51154162 41 CAGGCCCAGAGAAGCTGCCGGGCTCCTTGCGGAAGGGGATT CAGGCCCAGAGAAGCTGCCAGGCTCCTTGCGGAAGGGGATT < 41bp 0.515675294128768 0.738237998661794 NA NA prediction 0.445125409066052 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51154142 chr22:51154141 synonymous SNV . 0 20 hm7G_associated_SNPs_24992 0 0 1 0 2 SHANK3 chr22:51154181 5'GT 51154181 Upstream 41bp 22882 chr19 47542691 47542691 1 + G A SKCM 47542692 + 47542672 47542712 41 ACGTGACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTG ACGTGACTGGGCGCCTTCGAGCCCACGCCCTGGGCCTTGTG < 41bp 0.541056727307389 0.763608814733002 NA NA prediction 0.445104174851226 Functional Gain - NPAS1 ENSG00000130751 CDS Human protein_coding chr19:47542692 chr19:47542691 synonymous SNV . 0 20 hm7G_associated_SNPs_24993 0 0 1 0 1 NPAS1 chr19:47542665 3'AG 47542665 Downstream 27bp 22883 chr19 51378047 51378047 1 + G T LUAD 51378048 + 51378028 51378068 41 AGCATTCCCAACCCTGGCAGGTGGCTGTGTACAGTCATGGA AGCATTCCCAACCCTGGCATGTGGCTGTGTACAGTCATGGA < 41bp 0.546710193593803 0.76925591331953 NA NA prediction 0.445091439451454 Functional Gain - KLK2 ENSG00000167751 CDS Human protein_coding chr19:51378048 chr19:51378047 nonsynonymous SNV 0.020 1 20 hm7G_associated_SNPs_24994 0 0 0 0 2 KLK2 chr19:51377977 3'AG 51377977 Downstream 71bp 22884 chr19 51378047 51378047 1 + G T LUAD 51378048 + 51378028 51378068 41 AGCATTCCCAACCCTGGCAGGTGGCTGTGTACAGTCATGGA AGCATTCCCAACCCTGGCATGTGGCTGTGTACAGTCATGGA < 41bp 0.546710193593803 0.76925591331953 NA NA prediction 0.445091439451454 Functional Gain - KLK2 ENSG00000167751 CDS Human protein_coding chr19:51378048 chr19:51378047 nonsynonymous SNV 0.020 1 20 hm7G_associated_SNPs_24994 0 0 0 0 2 KLK2 chr19:51378136 5'GT 51378136 Upstream 90bp 22885 chr2 190660540 190660540 1 + G T LUAD 190660541 + 190660521 190660561 41 GGTGCGAGATAACGGGGAGGGTATCAAGGCTGTTGATGCAC GGTGCGAGATAACGGGGAGTGTATCAAGGCTGTTGATGCAC < 41bp 0.409868646509606 0.722544424953523 NA NA prediction 0.445088849907046 Functional Gain - PMS1 ENSG00000064933 CDS Human protein_coding chr2:190660541 chr2:190660540 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_24995 0 0 1 1 1 PMS1 chr2:190660495 3'AG 190660495 Downstream 46bp 22886 chr20 61457204 61457204 1 + G A CESC 61457205 + 61457185 61457225 41 CTGGGCCCGCCGGCCTCCCGGGCAGCGTGGGGCTGCAGGTG CTGGGCCCGCCGGCCTCCCAGGCAGCGTGGGGCTGCAGGTG < 41bp 0.547541846207539 0.770076437709661 NA NA prediction 0.445069183004244 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61457205 chr20:61457204 synonymous SNV . 0 20 hm7G_associated_SNPs_24996 0 0 1 0 1 COL9A3 chr20:61457222 5'GT 61457222 Upstream 19bp 22887 chr1 205039185 205039185 1 + G T UCEC 205039186 + 205039166 205039206 41 CACTCGTGTACTCAGCTGAGGAAGGTGGGCTGCCCCTGGGC CACTCGTGTACTCAGCTGATGAAGGTGGGCTGCCCCTGGGC < 41bp 0.388752511388041 0.722513391976664 NA NA prediction 0.445026783953329 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039186 chr1:205039185 nonsynonymous SNV 0.435 3 20 hm7G_associated_SNPs_24999 0 0 0 0 1 CNTN2 chr1:205039189 5'GT 205039189 Upstream 5bp 22888 chr16 31382464 31382464 1 + G A rs2230426 31382465 + 31382445 31382485 41 TTGGGCAGGCACTGAGCGGGGGTCAAGACCTCACCCAGGAT TTGGGCAGGCACTGAGCGGAGGTCAAGACCTCACCCAGGAT < 41bp 0.501271265523527 0.723783891318479 NA NA prediction 0.445025251589903 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382465 chr16:31382464 synonymous SNV . 0 20 hm7G_associated_SNPs_25000 0 0 0 0 2 ITGAX chr16:31382405 3'AG 31382405 Downstream 60bp 22889 chr16 31382464 31382464 1 + G A rs2230426 31382465 + 31382445 31382485 41 TTGGGCAGGCACTGAGCGGGGGTCAAGACCTCACCCAGGAT TTGGGCAGGCACTGAGCGGAGGTCAAGACCTCACCCAGGAT < 41bp 0.501271265523527 0.723783891318479 NA NA prediction 0.445025251589903 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382465 chr16:31382464 synonymous SNV . 0 20 hm7G_associated_SNPs_25000 0 0 0 0 2 ITGAX chr16:31382535 5'GT 31382535 Upstream 72bp 22890 chr19 10127797 10127797 1 + G A LUSC 10127798 + 10127778 10127818 41 CAGCTGCTGGGGAGGCTCTGGGGCAGACCCTCACCGTGGCC CAGCTGCTGGGGAGGCTCTAGGGCAGACCCTCACCGTGGCC < 41bp 0.507212557542695 0.729723847739173 NA NA prediction 0.445022580392956 Functional Gain - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10127798 chr19:10127797 synonymous SNV . 0 20 hm7G_associated_SNPs_25001 0 0 0 0 2 RDH8 chr19:10127733 3'AG 10127733 Downstream 65bp 22891 chr19 10127797 10127797 1 + G A LUSC 10127798 + 10127778 10127818 41 CAGCTGCTGGGGAGGCTCTGGGGCAGACCCTCACCGTGGCC CAGCTGCTGGGGAGGCTCTAGGGCAGACCCTCACCGTGGCC < 41bp 0.507212557542695 0.729723847739173 NA NA prediction 0.445022580392956 Functional Gain - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10127798 chr19:10127797 synonymous SNV . 0 20 hm7G_associated_SNPs_25001 0 0 0 0 2 RDH8 chr19:10127891 5'GT 10127891 Upstream 95bp 22892 chr14 21467995 21467995 1 + G T COAD 21467996 + 21467976 21468016 41 TGACTGCTGAAGCCCTGGAGGAAATTGAATCACAGATTCAG TGACTGCTGAAGCCCTGGATGAAATTGAATCACAGATTCAG < 41bp 0.670725196944611 0.89322956374294 NA NA prediction 0.445008733596659 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467996 chr14:21467995 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_25004 0 0 0 0 2 SLC39A2 chr14:21467901 3'AG 21467901 Downstream 95bp 22893 chr14 21467995 21467995 1 + G T COAD 21467996 + 21467976 21468016 41 TGACTGCTGAAGCCCTGGAGGAAATTGAATCACAGATTCAG TGACTGCTGAAGCCCTGGATGAAATTGAATCACAGATTCAG < 41bp 0.670725196944611 0.89322956374294 NA NA prediction 0.445008733596659 Functional Gain - SLC39A2 ENSG00000165794 CDS Human protein_coding chr14:21467996 chr14:21467995 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_25004 0 0 0 0 2 SLC39A2 chr14:21468031 5'GT 21468031 Upstream 37bp 22894 chr1 50663104 50663104 1 + G T LIHC 50663105 + 50663085 50663125 41 CTCCTTCTCTTTGCAGGCTGGACAATTTGCTTAATATGGCC CTCCTTCTCTTTGCAGGCTTGACAATTTGCTTAATATGGCC < 41bp 0.403425715510437 0.722503511330864 NA NA prediction 0.445007022661728 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50663105 chr1:50663104 synonymous SNV . 0 20 hm7G_associated_SNPs_25005 0 0 0 0 2 ELAVL4 chr1:50663101 3'AG 50663101 Downstream 4bp 22895 chr1 50663104 50663104 1 + G T LIHC 50663105 + 50663085 50663125 41 CTCCTTCTCTTTGCAGGCTGGACAATTTGCTTAATATGGCC CTCCTTCTCTTTGCAGGCTTGACAATTTGCTTAATATGGCC < 41bp 0.403425715510437 0.722503511330864 NA NA prediction 0.445007022661728 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50663105 chr1:50663104 synonymous SNV . 0 20 hm7G_associated_SNPs_25005 0 0 0 0 2 ELAVL4 chr1:50663139 5'GT 50663139 Upstream 36bp 22896 chr3 184295195 184295195 1 + G T BLCA 184295196 + 184295176 184295216 41 GCAGCCTCACCCTATCCTGGGCACCCCCAGAGCGGCCCAAC GCAGCCTCACCCTATCCTGTGCACCCCCAGAGCGGCCCAAC < 41bp 0.687475299469922 0.909968986513271 NA NA prediction 0.444987374086697 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295196 chr3:184295195 nonsynonymous SNV 0.981 5 20 hm7G_associated_SNPs_25008 0 0 0 0 2 EPHB3 chr3:184295131 3'AG 184295131 Downstream 65bp 22897 chr3 184295195 184295195 1 + G T BLCA 184295196 + 184295176 184295216 41 GCAGCCTCACCCTATCCTGGGCACCCCCAGAGCGGCCCAAC GCAGCCTCACCCTATCCTGTGCACCCCCAGAGCGGCCCAAC < 41bp 0.687475299469922 0.909968986513271 NA NA prediction 0.444987374086697 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295196 chr3:184295195 nonsynonymous SNV 0.981 5 20 hm7G_associated_SNPs_25008 0 0 0 0 2 EPHB3 chr3:184295255 5'GT 184295255 Upstream 61bp 22898 chr11 65414060 65414060 1 + G A COAD 65414061 + 65414041 65414081 41 GAATGGTGAGCAGGCGGCCGGCCACGCGCGCCAGTTCCACG GAATGGTGAGCAGGCGGCCAGCCACGCGCGCCAGTTCCACG < 41bp 0.530814959155859 0.753303764481192 NA NA prediction 0.444977610650666 Functional Gain - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65414061 chr11:65414060 nonsynonymous SNV 0.552 0 20 hm7G_associated_SNPs_25009 0 0 0 0 1 SIPA1 chr11:65414134 5'GT 65414134 Upstream 75bp 22899 chr20 32664926 32664926 1 + G A rs2281209 32664927 + 32664907 32664947 41 TGGTGGTGGCGGTGGCGGTGGCAGCAGCCGGCCACCAGCCC TGGTGGTGGCGGTGGCGGTAGCAGCAGCCGGCCACCAGCCC < 41bp 0.497602167626756 0.722465552727562 NA NA prediction 0.444931105455124 Functional Gain - RALY ENSG00000125970 CDS Human protein_coding chr20:32664927 chr20:32664926 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_25010 0 0 1 0 1 RALY chr20:32664834 3'AG 32664834 Downstream 93bp 22900 chr19 7925531 7925531 1 + G A CESC 7925532 + 7925512 7925552 41 GCGGGAGACGGAGACACTGGGGGCCCTTCGGGAGATGCAGG GCGGGAGACGGAGACACTGAGGGCCCTTCGGGAGATGCAGG < 41bp 0.499235380435707 0.72245193580431 NA NA prediction 0.44490387160862 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7925532 chr19:7925531 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_25012 0 0 0 0 2 EVI5L chr19:7925447 3'AG 7925447 Downstream 85bp 22901 chr19 7925531 7925531 1 + G A CESC 7925532 + 7925512 7925552 41 GCGGGAGACGGAGACACTGGGGGCCCTTCGGGAGATGCAGG GCGGGAGACGGAGACACTGAGGGCCCTTCGGGAGATGCAGG < 41bp 0.499235380435707 0.72245193580431 NA NA prediction 0.44490387160862 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7925532 chr19:7925531 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_25012 0 0 0 0 2 EVI5L chr19:7925575 5'GT 7925575 Upstream 45bp 22902 chr3 113513751 113513751 1 + G T LUAD 113513752 + 113513732 113513772 41 AGAGTACTTCCGTGACATGGGCTATCATGTCAGTATGATGG AGAGTACTTCCGTGACATGTGCTATCATGTCAGTATGATGG < 41bp 0.674664214628895 0.897100931360447 NA NA prediction 0.444873433463105 Functional Gain - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113513752 chr3:113513751 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_25013 0 0 1 0 2 ATP6V1A chr3:113513719 3'AG 113513719 Downstream 33bp 22903 chr3 113513751 113513751 1 + G T LUAD 113513752 + 113513732 113513772 41 AGAGTACTTCCGTGACATGGGCTATCATGTCAGTATGATGG AGAGTACTTCCGTGACATGTGCTATCATGTCAGTATGATGG < 41bp 0.674664214628895 0.897100931360447 NA NA prediction 0.444873433463105 Functional Gain - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113513752 chr3:113513751 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_25013 0 0 1 0 2 ATP6V1A chr3:113513841 5'GT 113513841 Upstream 91bp 22904 chr19 49100047 49100047 1 + G T LUSC 49100048 + 49100028 49100068 41 GTTCCTGGGCCGTCCGCTGGGCAAGGAGGCACTGGGCTCCG GTTCCTGGGCCGTCCGCTGTGCAAGGAGGCACTGGGCTCCG < 41bp 0.681649814702127 0.904086396728241 NA NA prediction 0.444873164052228 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49100048 chr19:49100047 nonsynonymous SNV 0.221 2 20 hm7G_associated_SNPs_25014 0 0 1 0 1 SULT2B1 chr19:49099996 3'AG 49099996 Downstream 52bp 22905 chr15 78765648 78765648 1 + G T UCEC 78765649 + 78765629 78765669 41 TTTCTCTTACTTTACCAGAGGTGGTTGGATGTGAGTTAACT TTTCTCTTACTTTACCAGATGTGGTTGGATGTGAGTTAACT < 41bp 0.403755200013281 0.722419110725311 NA NA prediction 0.444838221450622 Functional Gain - IREB2 ENSG00000136381 CDS Human protein_coding chr15:78765649 chr15:78765648 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_25016 0 0 1 0 2 IREB2 chr15:78765584 3'AG 78765584 Downstream 65bp 22906 chr15 78765648 78765648 1 + G T UCEC 78765649 + 78765629 78765669 41 TTTCTCTTACTTTACCAGAGGTGGTTGGATGTGAGTTAACT TTTCTCTTACTTTACCAGATGTGGTTGGATGTGAGTTAACT < 41bp 0.403755200013281 0.722419110725311 NA NA prediction 0.444838221450622 Functional Gain - IREB2 ENSG00000136381 CDS Human protein_coding chr15:78765649 chr15:78765648 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_25016 0 0 1 0 2 IREB2 chr15:78765723 5'GT 78765723 Upstream 76bp 22907 chr20 60831215 60831215 1 + G T LIHC 60831216 + 60831196 60831236 41 GTAGAAGAGCACATGTCAGGGGCAGTGGAGGCTGGCTGCTG GTAGAAGAGCACATGTCAGTGGCAGTGGAGGCTGGCTGCTG < 41bp 0.563769046240068 0.786187121563365 NA NA prediction 0.444836150646595 Functional Gain - OSBPL2 ENSG00000130703 UTR5 Human protein_coding chr20:60831216 chr20:60831215 . . 0 20 hm7G_associated_SNPs_25017 0 0 1 0 1 OSBPL2 chr20:60831277 5'GT 60831277 Upstream 63bp 22908 chrX 115588856 115588856 1 + G T SARC 115588857 + 115588837 115588877 41 TGACTGGGGAGTTGCTTTAGGCTGGTGTATGATTGTTTTCT TGACTGGGGAGTTGCTTTATGCTGGTGTATGATTGTTTTCT < 41bp 0.658511446441419 0.880912828521726 NA NA prediction 0.444802764160614 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115588857 chrX:115588856 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_25018 0 0 1 0 2 SLC6A14 chrX:115588775 3'AG 115588775 Downstream 82bp 22909 chrX 115588856 115588856 1 + G T SARC 115588857 + 115588837 115588877 41 TGACTGGGGAGTTGCTTTAGGCTGGTGTATGATTGTTTTCT TGACTGGGGAGTTGCTTTATGCTGGTGTATGATTGTTTTCT < 41bp 0.658511446441419 0.880912828521726 NA NA prediction 0.444802764160614 Functional Gain - SLC6A14 ENSG00000087916 CDS Human other chrX:115588857 chrX:115588856 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_25018 0 0 1 0 2 SLC6A14 chrX:115588942 5'GT 115588942 Upstream 87bp 22910 chr16 30980976 30980976 1 + G T LUSC 30980977 + 30980957 30980997 41 AAGATCGAGAGGAAGCTGTGGATACCACAAAGAAGGAGACA AAGATCGAGAGGAAGCTGTTGATACCACAAAGAAGGAGACA < 41bp 0.684992818737173 0.907391669960655 NA NA prediction 0.444797702446964 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30980977 chr16:30980976 synonymous SNV . 0 20 hm7G_associated_SNPs_25019 0 0 1 0 2 SETD1A chr16:30980923 3'AG 30980923 Downstream 54bp 22911 chr16 30980976 30980976 1 + G T LUSC 30980977 + 30980957 30980997 41 AAGATCGAGAGGAAGCTGTGGATACCACAAAGAAGGAGACA AAGATCGAGAGGAAGCTGTTGATACCACAAAGAAGGAGACA < 41bp 0.684992818737173 0.907391669960655 NA NA prediction 0.444797702446964 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30980977 chr16:30980976 synonymous SNV . 0 20 hm7G_associated_SNPs_25019 0 0 1 0 2 SETD1A chr16:30981010 5'GT 30981010 Upstream 35bp 22912 chrX 153696683 153696683 1 + G A rs79671454 153696684 + 153696664 153696704 41 AAGGCCCTGCGCCTCTTCGGGCAGCTGCTGCACAGCCGCGC AAGGCCCTGCGCCTCTTCGAGCAGCTGCTGCACAGCCGCGC < 41bp 0.496871153195069 0.722396255230957 NA NA prediction 0.444792510461914 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696684 chrX:153696683 nonsynonymous SNV 0.955 1 20 hm7G_associated_SNPs_25020 0 0 0 0 1 PLXNA3 chrX:153696646 3'AG 153696646 Downstream 38bp 22913 chr9 127213445 127213445 1 + G A rs76928670 127213446 + 127213426 127213466 41 GACGCACCTTGGGGAGCAGGGGAAAGGTGGCTGCACGGAGC GACGCACCTTGGGGAGCAGAGGAAAGGTGGCTGCACGGAGC < 41bp 0.496970559574418 0.722388562474631 NA NA prediction 0.444777124949261 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127213446 chr9:127213445 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_25021 0 0 0 0 1 PSMB7;NR5A1 chr9:127213478 5'GT 127213478 Upstream 34bp 22914 chr20 60772947 60772947 1 + G T UCEC 60772948 + 60772928 60772968 41 CTGTCGTCGGTCCTGTCGCGGTACCAGGGTTTCAGTGGAGA CTGTCGTCGGTCCTGTCGCTGTACCAGGGTTTCAGTGGAGA < 41bp 0.378202418147233 0.722386574764932 NA NA prediction 0.444773149529865 Functional Gain - MTG2 ENSG00000101181 CDS Human protein_coding chr20:60772948 chr20:60772947 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_25022 0 0 1 0 2 MTG2 chr20:60772908 3'AG 60772908 Downstream 40bp 22915 chr20 60772947 60772947 1 + G T UCEC 60772948 + 60772928 60772968 41 CTGTCGTCGGTCCTGTCGCGGTACCAGGGTTTCAGTGGAGA CTGTCGTCGGTCCTGTCGCTGTACCAGGGTTTCAGTGGAGA < 41bp 0.378202418147233 0.722386574764932 NA NA prediction 0.444773149529865 Functional Gain - MTG2 ENSG00000101181 CDS Human protein_coding chr20:60772948 chr20:60772947 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_25022 0 0 1 0 2 MTG2 chr20:60773023 5'GT 60773023 Upstream 77bp 22916 chr11 130067764 130067764 1 + G A rs583863 130067765 + 130067745 130067785 41 GGCAGTTCACGTGCCGCACGGGGCGGTGTATCCGGAAGGAG GGCAGTTCACGTGCCGCACAGGGCGGTGTATCCGGAAGGAG < 41bp 0.494153245078731 0.72238379353255 NA NA prediction 0.444767587065101 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130067765 chr11:130067764 synonymous SNV . 0 20 hm7G_associated_SNPs_25023 0 0 0 0 2 ST14 chr11:130067736 3'AG 130067736 Downstream 29bp 22917 chr11 130067764 130067764 1 + G A rs583863 130067765 + 130067745 130067785 41 GGCAGTTCACGTGCCGCACGGGGCGGTGTATCCGGAAGGAG GGCAGTTCACGTGCCGCACAGGGCGGTGTATCCGGAAGGAG < 41bp 0.494153245078731 0.72238379353255 NA NA prediction 0.444767587065101 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130067765 chr11:130067764 synonymous SNV . 0 20 hm7G_associated_SNPs_25023 0 0 0 0 2 ST14 chr11:130067840 5'GT 130067840 Upstream 77bp 22918 chr11 1858266 1858266 1 + G A rs143221042 1858267 + 1858247 1858287 41 CCACCAAAAAGGGCACGGCGGCCCCCTACTTCAATGAGGCC CCACCAAAAAGGGCACGGCAGCCCCCTACTTCAATGAGGCC < 41bp 0.50891389223041 0.731295493023288 NA NA prediction 0.444763201585756 Functional Gain - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1858267 chr11:1858266 synonymous SNV . 0 20 hm7G_associated_SNPs_25026 0 0 0 0 2 SYT8 chr11:1858187 3'AG 1858187 Downstream 80bp 22919 chr11 1858266 1858266 1 + G A rs143221042 1858267 + 1858247 1858287 41 CCACCAAAAAGGGCACGGCGGCCCCCTACTTCAATGAGGCC CCACCAAAAAGGGCACGGCAGCCCCCTACTTCAATGAGGCC < 41bp 0.50891389223041 0.731295493023288 NA NA prediction 0.444763201585756 Functional Gain - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1858267 chr11:1858266 synonymous SNV . 0 20 hm7G_associated_SNPs_25026 0 0 0 0 2 SYT8 chr11:1858320 5'GT 1858320 Upstream 55bp 22920 chr9 95858570 95858570 1 + G A rs181987489 95858571 + 95858551 95858591 41 ACCGGGCGGCTGACCGAGGGGCGGACGCGCGGCGGGGCAGA ACCGGGCGGCTGACCGAGGAGCGGACGCGCGGCGGGGCAGA < 41bp 0.510010295872596 0.732388193080282 NA NA prediction 0.444755794415371 Functional Gain - CARD19 ENSG00000165233 UTR5 Human protein_coding chr9:95858571 chr9:95858570 . . 0 20 hm7G_associated_SNPs_25027 0 0 1 0 1 CARD19 chr9:95858634 5'GT 95858634 Upstream 65bp 22921 chr14 89044460 89044460 1 + G T UCEC 89044461 + 89044441 89044481 41 TAAAGAAGAGGAAACAAAAGGAGATTCTGTAGAAAAAAATC TAAAGAAGAGGAAACAAAATGAGATTCTGTAGAAAAAAATC < 41bp 0.398114337230176 0.722370314957466 NA NA prediction 0.444740629914931 Functional Gain - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89044461 chr14:89044460 stopgain 0.977 0 20 hm7G_associated_SNPs_25029 0 0 1 0 1 ZC3H14 chr14:89044484 5'GT 89044484 Upstream 25bp 22922 chr1 162724443 162724443 1 + G T LUAD 162724444 + 162724424 162724464 41 GAAGAAGGGGATGGAGCCTGGTGCCCTGAGATTCCAGTGGA GAAGAAGGGGATGGAGCCTTGTGCCCTGAGATTCCAGTGGA < 41bp 0.385742096232138 0.722364129978854 NA NA prediction 0.444728259957708 Functional Gain - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162724444 chr1:162724443 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_25031 0 0 1 0 1 DDR2 chr1:162724414 3'AG 162724414 Downstream 30bp 22923 chr13 26927936 26927936 1 + G T LUAD 26927937 + 26927917 26927957 41 AGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCACTATTA AGCCAGTTCAGTTACCTCGTGGAATGGTGAAGTCACTATTA < 41bp 0.673222260643037 0.895536767196418 NA NA prediction 0.444629013106763 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927937 chr13:26927936 synonymous SNV . 0 20 hm7G_associated_SNPs_25036 0 0 1 0 2 CDK8 chr13:26927877 3'AG 26927877 Downstream 60bp 22924 chr13 26927936 26927936 1 + G T LUAD 26927937 + 26927917 26927957 41 AGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCACTATTA AGCCAGTTCAGTTACCTCGTGGAATGGTGAAGTCACTATTA < 41bp 0.673222260643037 0.895536767196418 NA NA prediction 0.444629013106763 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26927937 chr13:26927936 synonymous SNV . 0 20 hm7G_associated_SNPs_25036 0 0 1 0 2 CDK8 chr13:26928017 5'GT 26928017 Upstream 82bp 22925 chrX 65475992 65475992 1 + G T LUAD 65475993 + 65475973 65476013 41 CTTGGCTATCTGCCAAAAGGGCATCCTGGAGCCCCATGGAG CTTGGCTATCTGCCAAAAGTGCATCCTGGAGCCCCATGGAG < 41bp 0.371477941629457 0.722308393631395 NA NA prediction 0.44461678726279 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65475993 chrX:65475992 nonsynonymous SNV 0.827 4 20 hm7G_associated_SNPs_25037 0 0 1 0 1 HEPH chrX:65475947 3'AG 65475947 Downstream 46bp 22926 chr22 24921765 24921765 1 + G A rs112036671 24921766 + 24921746 24921786 41 CCATCGTGAAAGAGTAGCCGGCTTCAGTGCCTGCCTTGGGG CCATCGTGAAAGAGTAGCCAGCTTCAGTGCCTGCCTTGGGG < 41bp 0.508485999282622 0.730793997199444 NA NA prediction 0.444615995833644 Functional Gain - UPB1 ENSG00000100024 UTR3 Human protein_coding chr22:24921766 chr22:24921765 . . 0 20 hm7G_associated_SNPs_25038 0 0 0 0 1 UPB1 chr22:24921679 3'AG 24921679 Downstream 87bp 22927 chr2 121736077 121736077 1 + G T LUSC 121736078 + 121736058 121736098 41 CGCTGGCAGGCCTGCACGCGGGAGCAGAAGCCCTTCAAGGC CGCTGGCAGGCCTGCACGCTGGAGCAGAAGCCCTTCAAGGC < 41bp 0.380565188778566 0.722307269914205 NA NA prediction 0.44461453982841 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121736078 chr2:121736077 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_25039 0 0 0 0 2 GLI2 chr2:121736010 3'AG 121736010 Downstream 68bp 22928 chr2 121736077 121736077 1 + G T LUSC 121736078 + 121736058 121736098 41 CGCTGGCAGGCCTGCACGCGGGAGCAGAAGCCCTTCAAGGC CGCTGGCAGGCCTGCACGCTGGAGCAGAAGCCCTTCAAGGC < 41bp 0.380565188778566 0.722307269914205 NA NA prediction 0.44461453982841 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121736078 chr2:121736077 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_25039 0 0 0 0 2 GLI2 chr2:121736159 5'GT 121736159 Upstream 83bp 22929 chr20 2842741 2842741 1 + G A UCEC 2842742 + 2842722 2842762 41 AATTGCCTCAATGGCCCCCGGGGCGCTGCTCCTGGAGGCTC AATTGCCTCAATGGCCCCCAGGGCGCTGCTCCTGGAGGCTC < 41bp 0.500008557572597 0.722292435626685 NA NA prediction 0.444567756108177 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2842742 chr20:2842741 nonsynonymous SNV 0.770 4 20 hm7G_associated_SNPs_25042 0 0 1 0 2 VPS16 chr20:2842700 3'AG 2842700 Downstream 42bp 22930 chr20 2842741 2842741 1 + G A UCEC 2842742 + 2842722 2842762 41 AATTGCCTCAATGGCCCCCGGGGCGCTGCTCCTGGAGGCTC AATTGCCTCAATGGCCCCCAGGGCGCTGCTCCTGGAGGCTC < 41bp 0.500008557572597 0.722292435626685 NA NA prediction 0.444567756108177 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2842742 chr20:2842741 nonsynonymous SNV 0.770 4 20 hm7G_associated_SNPs_25042 0 0 1 0 2 VPS16 chr20:2842776 5'GT 2842776 Upstream 36bp 22931 chr8 22475054 22475054 1 + G T UCEC 22475055 + 22475035 22475075 41 CCAGAACTGTTGCTTCTGAGGGATGATGGAGAGGAGGAGTT CCAGAACTGTTGCTTCTGATGGATGATGGAGAGGAGGAGTT < 41bp 0.679613448175491 0.901894260616379 NA NA prediction 0.444561624881777 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475055 chr8:22475054 nonsynonymous SNV 0.130 4 20 hm7G_associated_SNPs_25043 0 0 1 0 1 CCAR2 chr8:22475077 5'GT 22475077 Upstream 24bp 22932 chr19 35791122 35791122 1 + G A SKCM 35791123 + 35791103 35791143 41 CACGTGAGCCTGCTCTGTGGGGCTGACAGCAACCCCCCGCC CACGTGAGCCTGCTCTGTGAGGCTGACAGCAACCCCCCGCC < 41bp 0.514504386728237 0.73678076775591 NA NA prediction 0.444552762055346 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35791123 chr19:35791122 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_25044 0 0 0 0 1 MAG chr19:35791050 3'AG 35791050 Downstream 73bp 22933 chr12 122672263 122672263 1 + G A COAD 122672264 + 122672244 122672284 41 CCAGGTGCTGGAGCTCTACGGCAATGAGATCAGCAGCATGG CCAGGTGCTGGAGCTCTACAGCAATGAGATCAGCAGCATGG < 41bp 0.528851528195803 0.751111573302307 NA NA prediction 0.444520090213008 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122672264 chr12:122672263 nonsynonymous SNV 0.775 2 20 hm7G_associated_SNPs_25047 0 0 0 0 1 LRRC43 chr12:122672248 3'AG 122672248 Downstream 16bp 22934 chr11 125780309 125780309 1 + G T LUSC 125780310 + 125780290 125780330 41 CTCTGCAAACTGGCCGTGTGGTTGAGCAGATGGGAAAATTC CTCTGCAAACTGGCCGTGTTGTTGAGCAGATGGGAAAATTC < 41bp 0.674044273433754 0.896288148988237 NA NA prediction 0.444487751108967 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125780310 chr11:125780309 synonymous SNV . 0 20 hm7G_associated_SNPs_25049 0 0 1 0 2 DDX25 chr11:125780259 3'AG 125780259 Downstream 51bp 22935 chr11 125780309 125780309 1 + G T LUSC 125780310 + 125780290 125780330 41 CTCTGCAAACTGGCCGTGTGGTTGAGCAGATGGGAAAATTC CTCTGCAAACTGGCCGTGTTGTTGAGCAGATGGGAAAATTC < 41bp 0.674044273433754 0.896288148988237 NA NA prediction 0.444487751108967 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125780310 chr11:125780309 synonymous SNV . 0 20 hm7G_associated_SNPs_25049 0 0 1 0 2 DDX25 chr11:125780373 5'GT 125780373 Upstream 65bp 22936 chr20 3731536 3731536 1 + G A LUSC 3731537 + 3731517 3731557 41 CTTTCAGCCCACCGTCAGCGGGATCATCCAGCACATAGGTG CTTTCAGCCCACCGTCAGCAGGATCATCCAGCACATAGGTG < 41bp 0.504071608738782 0.72630744024449 NA NA prediction 0.444471663011415 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3731537 chr20:3731536 nonsynonymous SNV 0.513 0 20 hm7G_associated_SNPs_25050 0 0 0 0 1 HSPA12B chr20:3731554 5'GT 3731554 Upstream 19bp 22937 chr14 75365089 75365089 1 + G T UCEC 75365090 + 75365070 75365110 41 AGTAACATCCAGGAGATGAGGGCTCGGCACAAAGAGGCTTT AGTAACATCCAGGAGATGATGGCTCGGCACAAAGAGGCTTT < 41bp 0.671488321791734 0.893716749372802 NA NA prediction 0.444456855162136 Functional Gain - DLST ENSG00000119689 CDS Human protein_coding chr14:75365090 chr14:75365089 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_25052 0 0 1 1 1 DLST chr14:75365072 3'AG 75365072 Downstream 18bp 22938 chr3 167507104 167507104 1 + G T LUSC 167507105 + 167507085 167507125 41 ATGGGAATGATGGAACTTGGGGCCCAAGGATCTACCCAGAA ATGGGAATGATGGAACTTGTGGCCCAAGGATCTACCCAGAA < 41bp 0.672984764540462 0.895207646062211 NA NA prediction 0.444445763043499 Functional Gain - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167507105 chr3:167507104 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_25053 0 0 0 0 1 SERPINI1 chr3:167507166 5'GT 167507166 Upstream 63bp 22939 chr12 69094612 69094612 1 + G T UCEC 69094613 + 69094593 69094633 41 CAGGAGATGGTCACATGGAGGCTGCTGGCTTCTTTGTATAG CAGGAGATGGTCACATGGATGCTGCTGGCTTCTTTGTATAG < 41bp 0.389079963039351 0.72221321406076 NA NA prediction 0.44442642812152 Functional Gain - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69094613 chr12:69094612 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25055 0 0 1 0 1 NUP107 chr12:69094633 5'GT 69094633 Upstream 22bp 22940 chr10 111890235 111890235 1 + G T OV 111890236 + 111890216 111890256 41 AATCGAACGTAAACAACAAGGCCTAGAAGGTTAGTTAATCT AATCGAACGTAAACAACAATGCCTAGAAGGTTAGTTAATCT < 41bp 0.391773394279793 0.722207381960024 NA NA prediction 0.444414763920049 Functional Gain - ADD3 ENSG00000148700 CDS Human protein_coding chr10:111890236 chr10:111890235 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25057 0 0 1 0 1 ADD3 chr10:111890244 5'GT 111890244 Upstream 10bp 22941 chr5 133725924 133725924 1 + G T LGG 133725925 + 133725905 133725945 41 TTTCCTCCTAGTCTCTGCTGGATGAACCGAATCCTAACAGT TTTCCTCCTAGTCTCTGCTTGATGAACCGAATCCTAACAGT < 41bp 0.649064195483406 0.871263365730627 NA NA prediction 0.444398340494442 Functional Gain - UBE2B ENSG00000119048 CDS Human protein_coding chr5:133725925 chr5:133725924 stopgain 1.000 0 20 hm7G_associated_SNPs_25059 0 0 1 0 1 UBE2B chr5:133725916 3'AG 133725916 Downstream 9bp 22942 chr11 118963471 118963471 1 + G T UCEC 118963472 + 118963452 118963492 41 GAACTTCTTGTTACAGGAAGGAGGCTGCAGTGTGCCAGTAG GAACTTCTTGTTACAGGAATGAGGCTGCAGTGTGCCAGTAG < 41bp 0.451262421958027 0.722195418378186 NA NA prediction 0.444390836756371 Functional Gain - HMBS ENSG00000256269 CDS Human protein_coding chr11:118963472 chr11:118963471 stopgain 1.000 1 20 hm7G_associated_SNPs_25060 0 0 1 0 1 HMBS chr11:118963468 3'AG 118963468 Downstream 4bp 22943 chr7 141333701 141333701 1 + G T COAD 141333702 + 141333682 141333722 41 AAATGTATTTAACTTCCAGGGTGAAAAGGAACAGCCTGTAT AAATGTATTTAACTTCCAGTGTGAAAAGGAACAGCCTGTAT < 41bp 0.396942559805695 0.722192018341213 NA NA prediction 0.444384036682426 Functional Gain - AGK ENSG00000006530 CDS Human protein_coding chr7:141333702 chr7:141333701 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25062 0 0 1 0 2 AGK chr7:141333701 5'GT 141333701 Upstream 1bp 22944 chr7 141333701 141333701 1 + G T COAD 141333702 + 141333682 141333722 41 AAATGTATTTAACTTCCAGGGTGAAAAGGAACAGCCTGTAT AAATGTATTTAACTTCCAGTGTGAAAAGGAACAGCCTGTAT < 41bp 0.396942559805695 0.722192018341213 NA NA prediction 0.444384036682426 Functional Gain - AGK ENSG00000006530 CDS Human protein_coding chr7:141333702 chr7:141333701 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25062 0 0 1 0 2 AGK chr7:141333780 5'GT 141333780 Upstream 80bp 22945 chr14 24030804 24030804 1 - C T LUSC 24030803 - 24030783 24030823 41 GCCTCTTGTGGAGCGAGATGGCCCTCAGGCTGATGAGGAAG GCCTCTTGTGGAGCGAGATAGCCCTCAGGCTGATGAGGAAG < 41bp 0.510350865959441 0.732542423830348 NA NA prediction 0.444383115741815 Functional Gain - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24030803 chr14:24030804 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_25063 0 0 1 0 2 AP1G2 chr14:24030721 5'GT 24030721 Upstream 84bp 22946 chr14 24030804 24030804 1 - C T LUSC 24030803 - 24030783 24030823 41 GCCTCTTGTGGAGCGAGATGGCCCTCAGGCTGATGAGGAAG GCCTCTTGTGGAGCGAGATAGCCCTCAGGCTGATGAGGAAG < 41bp 0.510350865959441 0.732542423830348 NA NA prediction 0.444383115741815 Functional Gain - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24030803 chr14:24030804 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_25063 0 0 1 0 2 AP1G2 chr14:24030844 3'AG 24030844 Downstream 41bp 22947 chr12 57627365 57627365 1 + G T MESO 57627366 + 57627346 57627386 41 GCCTGCACCCCCATGTTCCGGGAGTACTCCCTGCAGGTTCT GCCTGCACCCCCATGTTCCTGGAGTACTCCCTGCAGGTTCT < 41bp 0.378243774798644 0.722189719963716 NA NA prediction 0.444379439927432 Functional Gain - SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627366 chr12:57627365 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_25065 0 0 1 0 2 SHMT2 chr12:57627346 3'AG 57627346 Downstream 20bp 22948 chr12 57627365 57627365 1 + G T MESO 57627366 + 57627346 57627386 41 GCCTGCACCCCCATGTTCCGGGAGTACTCCCTGCAGGTTCT GCCTGCACCCCCATGTTCCTGGAGTACTCCCTGCAGGTTCT < 41bp 0.378243774798644 0.722189719963716 NA NA prediction 0.444379439927432 Functional Gain - SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57627366 chr12:57627365 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_25065 0 0 1 0 2 SHMT2 chr12:57627445 5'GT 57627445 Upstream 81bp 22949 chr3 28555607 28555607 1 + G T GBM 28555608 + 28555588 28555628 41 AAGCCCAAATTTAGAAAAAGGAAAAGGTATGCTTTTTGAAA AAGCCCAAATTTAGAAAAATGAAAAGGTATGCTTTTTGAAA < 41bp 0.440458806392379 0.722156582298678 NA NA prediction 0.444313164597356 Functional Gain - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28555608 chr3:28555607 nonsynonymous SNV 0.780 1 20 hm7G_associated_SNPs_25068 0 0 0 0 2 ZCWPW2 chr3:28555555 3'AG 28555555 Downstream 53bp 22950 chr3 28555607 28555607 1 + G T GBM 28555608 + 28555588 28555628 41 AAGCCCAAATTTAGAAAAAGGAAAAGGTATGCTTTTTGAAA AAGCCCAAATTTAGAAAAATGAAAAGGTATGCTTTTTGAAA < 41bp 0.440458806392379 0.722156582298678 NA NA prediction 0.444313164597356 Functional Gain - ZCWPW2 ENSG00000206559 CDS Human protein_coding chr3:28555608 chr3:28555607 nonsynonymous SNV 0.780 1 20 hm7G_associated_SNPs_25068 0 0 0 0 2 ZCWPW2 chr3:28555613 5'GT 28555613 Upstream 7bp 22951 chr17 8221758 8221758 1 + G A SKCM 8221759 + 8221739 8221779 41 GTCAGGAGAATGCCCAGAAGGCCCTGGGTGCTGTCAGCAAG GTCAGGAGAATGCCCAGAAAGCCCTGGGTGCTGTCAGCAAG < 41bp 0.500184439975764 0.722333771125772 NA NA prediction 0.444298662300016 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8221759 chr17:8221758 synonymous SNV . 0 20 hm7G_associated_SNPs_25069 0 0 0 0 2 ARHGEF15 chr17:8221705 3'AG 8221705 Downstream 54bp 22952 chr17 8221758 8221758 1 + G A SKCM 8221759 + 8221739 8221779 41 GTCAGGAGAATGCCCAGAAGGCCCTGGGTGCTGTCAGCAAG GTCAGGAGAATGCCCAGAAAGCCCTGGGTGCTGTCAGCAAG < 41bp 0.500184439975764 0.722333771125772 NA NA prediction 0.444298662300016 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8221759 chr17:8221758 synonymous SNV . 0 20 hm7G_associated_SNPs_25069 0 0 0 0 2 ARHGEF15 chr17:8221779 5'GT 8221779 Upstream 22bp 22953 chr21 30547036 30547036 1 + G T UCEC 30547037 + 30547017 30547057 41 TACCCCGAATCTTCAGGAAGGAGCTCATTGCCAAGTTAGAT TACCCCGAATCTTCAGGAATGAGCTCATTGCCAAGTTAGAT < 41bp 0.413643585947565 0.722145966895932 NA NA prediction 0.444291933791863 Functional Gain - MAP3K7CL ENSG00000156265 CDS Human protein_coding chr21:30547037 chr21:30547036 nonsynonymous SNV 0.983 3 20 hm7G_associated_SNPs_25071 0 0 0 1 1 MAP3K7CL chr21:30547033 3'AG 30547033 Downstream 4bp 22954 chr5 78376548 78376548 1 + G T PAAD 78376549 + 78376529 78376569 41 CTGCCTGTGACCTCGCCAGGGAAGTGGCTGGCAAAGGTGAT CTGCCTGTGACCTCGCCAGTGAAGTGGCTGGCAAAGGTGAT < 41bp 0.674153262375676 0.89629758285352 NA NA prediction 0.444288640955689 Functional Gain - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78376549 chr5:78376548 nonsynonymous SNV 0.766 1 20 hm7G_associated_SNPs_25072 0 0 1 0 1 BHMT2 chr5:78376510 3'AG 78376510 Downstream 39bp 22955 chrX 47445057 47445057 1 + G T CESC 47445058 + 47445038 47445078 41 CCTACACTGTTGGCTGTGAGGAATGCACAGTGAGTGCCTGG CCTACACTGTTGGCTGTGATGAATGCACAGTGAGTGCCTGG < 41bp 0.675414964467182 0.897552634898941 NA NA prediction 0.444275340863517 Functional Gain - TIMP1 ENSG00000102265 CDS Human protein_coding chrX:47445058 chrX:47445057 nonsynonymous SNV 0.864 1 20 hm7G_associated_SNPs_25073 0 0 1 0 1 TIMP1 chrX:47445066 5'GT 47445066 Upstream 10bp 22956 chr16 2514075 2514075 1 + G T UCEC 2514076 + 2514056 2514096 41 ACCAAGACCATGTCCTGTGGGGAGGCCCCCCGGAGCCTCGC ACCAAGACCATGTCCTGTGTGGAGGCCCCCCGGAGCCTCGC < 41bp 0.388576105402676 0.722133760306363 NA NA prediction 0.444267520612725 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2514076 chr16:2514075 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_25074 0 0 0 0 1 C16orf59 chr16:2514040 3'AG 2514040 Downstream 36bp 22957 chr19 4219734 4219734 1 + G T LUAD 4219735 + 4219715 4219755 41 CCCAGGAGGCTCTGGACAAGGCCAAGGAGAAGGACAAGAAG CCCAGGAGGCTCTGGACAATGCCAAGGAGAAGGACAAGAAG < 41bp 0.682305247179171 0.904435928979916 NA NA prediction 0.44426136360149 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4219735 chr19:4219734 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_25075 0 0 0 0 1 ANKRD24 chr19:4219755 5'GT 4219755 Upstream 22bp 22958 chr2 95715423 95715423 1 + G T COAD 95715424 + 95715404 95715444 41 CAAGACGGCTTCACCTACAGGCACTACCATGAAAACATTGC CAAGACGGCTTCACCTACATGCACTACCATGAAAACATTGC < 41bp 0.381052901914543 0.722129214573936 NA NA prediction 0.444258429147872 Functional Gain - MAL ENSG00000172005 CDS Human protein_coding chr2:95715424 chr2:95715423 nonsynonymous SNV 0.105 2 20 hm7G_associated_SNPs_25076 0 0 0 0 2 MAL chr2:95715326 3'AG 95715326 Downstream 98bp 22959 chr2 95715423 95715423 1 + G T COAD 95715424 + 95715404 95715444 41 CAAGACGGCTTCACCTACAGGCACTACCATGAAAACATTGC CAAGACGGCTTCACCTACATGCACTACCATGAAAACATTGC < 41bp 0.381052901914543 0.722129214573936 NA NA prediction 0.444258429147872 Functional Gain - MAL ENSG00000172005 CDS Human protein_coding chr2:95715424 chr2:95715423 nonsynonymous SNV 0.105 2 20 hm7G_associated_SNPs_25076 0 0 0 0 2 MAL chr2:95715451 5'GT 95715451 Upstream 29bp 22960 chr11 66834233 66834233 1 + G T SKCM 66834234 + 66834214 66834254 41 GATGACTATGACCGCCTGCGGCCCCTGTTCTACCCTGACGC GATGACTATGACCGCCTGCTGCCCCTGTTCTACCCTGACGC < 41bp 0.382357689880115 0.722126297563336 NA NA prediction 0.444252595126671 Functional Gain - RHOD ENSG00000173156 CDS Human protein_coding chr11:66834234 chr11:66834233 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_25077 0 0 0 0 2 RHOD chr11:66834209 3'AG 66834209 Downstream 25bp 22961 chr11 66834233 66834233 1 + G T SKCM 66834234 + 66834214 66834254 41 GATGACTATGACCGCCTGCGGCCCCTGTTCTACCCTGACGC GATGACTATGACCGCCTGCTGCCCCTGTTCTACCCTGACGC < 41bp 0.382357689880115 0.722126297563336 NA NA prediction 0.444252595126671 Functional Gain - RHOD ENSG00000173156 CDS Human protein_coding chr11:66834234 chr11:66834233 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_25077 0 0 0 0 2 RHOD chr11:66834318 5'GT 66834318 Upstream 86bp 22962 chr2 47250580 47250580 1 + G T LUAD 47250581 + 47250561 47250601 41 AAGCAAGATGAATTGCACCGGAAGGCACTGCAGACGCTGGA AAGCAAGATGAATTGCACCTGAAGGCACTGCAGACGCTGGA < 41bp 0.375886363231159 0.722118914524171 NA NA prediction 0.444237829048342 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47250581 chr2:47250580 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_25080 0 0 1 0 2 TTC7A chr2:47250547 3'AG 47250547 Downstream 34bp 22963 chr2 47250580 47250580 1 + G T LUAD 47250581 + 47250561 47250601 41 AAGCAAGATGAATTGCACCGGAAGGCACTGCAGACGCTGGA AAGCAAGATGAATTGCACCTGAAGGCACTGCAGACGCTGGA < 41bp 0.375886363231159 0.722118914524171 NA NA prediction 0.444237829048342 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47250581 chr2:47250580 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_25080 0 0 1 0 2 TTC7A chr2:47250604 5'GT 47250604 Upstream 25bp 22964 chr7 87022300 87022300 1 + G T LUAD 87022301 + 87022281 87022321 41 TTGTTCTCTCAACAAGTCTGGTTGGCTATTTACGAGTCCAG TTGTTCTCTCAACAAGTCTTGTTGGCTATTTACGAGTCCAG < 41bp 0.392096825550422 0.722111200155657 NA NA prediction 0.444222400311314 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:87022301 chr7:87022300 synonymous SNV . 0 20 hm7G_associated_SNPs_25081 0 0 0 0 2 CROT chr7:87022264 3'AG 87022264 Downstream 37bp 22965 chr7 87022300 87022300 1 + G T LUAD 87022301 + 87022281 87022321 41 TTGTTCTCTCAACAAGTCTGGTTGGCTATTTACGAGTCCAG TTGTTCTCTCAACAAGTCTTGTTGGCTATTTACGAGTCCAG < 41bp 0.392096825550422 0.722111200155657 NA NA prediction 0.444222400311314 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:87022301 chr7:87022300 synonymous SNV . 0 20 hm7G_associated_SNPs_25081 0 0 0 0 2 CROT chr7:87022383 5'GT 87022383 Upstream 84bp 22966 chr15 75632110 75632110 1 + G T LUSC 75632111 + 75632091 75632131 41 CCAGCCTGCTGCAATCCGTGGAAGAGCCCATGGTGCACCTG CCAGCCTGCTGCAATCCGTTGAAGAGCCCATGGTGCACCTG < 41bp 0.63070418889746 0.85280803284559 NA NA prediction 0.44420768789626 Functional Gain - COMMD4 ENSG00000140365 CDS Human protein_coding chr15:75632111 chr15:75632110 synonymous SNV . 0 20 hm7G_associated_SNPs_25082 0 0 1 0 1 COMMD4 chr15:75632043 3'AG 75632043 Downstream 68bp 22967 chr16 2025393 2025393 1 + G A rs34396682 2025394 + 2025374 2025414 41 AGGAGCCAGTGTCCCAGCTGGGTGTGAAGTCCCCAGGGCTG AGGAGCCAGTGTCCCAGCTAGGTGTGAAGTCCCCAGGGCTG < 41bp 0.493011407360984 0.722096311710506 NA NA prediction 0.444192623421013 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2025394 chr16:2025393 synonymous SNV . 0 20 hm7G_associated_SNPs_25083 0 0 1 0 2 TBL3 chr16:2025346 3'AG 2025346 Downstream 48bp 22968 chr16 2025393 2025393 1 + G A rs34396682 2025394 + 2025374 2025414 41 AGGAGCCAGTGTCCCAGCTGGGTGTGAAGTCCCCAGGGCTG AGGAGCCAGTGTCCCAGCTAGGTGTGAAGTCCCCAGGGCTG < 41bp 0.493011407360984 0.722096311710506 NA NA prediction 0.444192623421013 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2025394 chr16:2025393 synonymous SNV . 0 20 hm7G_associated_SNPs_25083 0 0 1 0 2 TBL3 chr16:2025439 5'GT 2025439 Upstream 47bp 22969 chr1 120056551 120056551 1 + G T UCEC 120056552 + 120056532 120056572 41 CCGGGCCCAACTCCTACAAGGAAATCATCCAGAATGGCCAT CCGGGCCCAACTCCTACAATGAAATCATCCAGAATGGCCAT < 41bp 0.669589062780899 0.891679841607772 NA NA prediction 0.444181557653745 Functional Gain - HSD3B1 ENSG00000203857 CDS Human protein_coding chr1:120056552 chr1:120056551 nonsynonymous SNV 0.345 1 20 hm7G_associated_SNPs_25085 0 0 0 0 1 HSD3B1 chr1:120056457 3'AG 120056457 Downstream 95bp 22970 chr20 36560111 36560111 1 + G A LUSC 36560112 + 36560092 36560132 41 GATGGCCTGCTCCTTCCGCGGCAGCGGCTCCCCCTCCTACT GATGGCCTGCTCCTTCCGCAGCAGCGGCTCCCCCTCCTACT < 41bp 0.521795544412793 0.743874121478656 NA NA prediction 0.444157154131726 Functional Gain - VSTM2L ENSG00000132821 CDS Human protein_coding chr20:36560112 chr20:36560111 nonsynonymous SNV 0.190 4 20 hm7G_associated_SNPs_25087 0 0 1 0 2 VSTM2L chr20:36560037 3'AG 36560037 Downstream 75bp 22971 chr20 36560111 36560111 1 + G A LUSC 36560112 + 36560092 36560132 41 GATGGCCTGCTCCTTCCGCGGCAGCGGCTCCCCCTCCTACT GATGGCCTGCTCCTTCCGCAGCAGCGGCTCCCCCTCCTACT < 41bp 0.521795544412793 0.743874121478656 NA NA prediction 0.444157154131726 Functional Gain - VSTM2L ENSG00000132821 CDS Human protein_coding chr20:36560112 chr20:36560111 nonsynonymous SNV 0.190 4 20 hm7G_associated_SNPs_25087 0 0 1 0 2 VSTM2L chr20:36560206 5'GT 36560206 Upstream 96bp 22972 chr11 14282264 14282264 1 + G T LUAD 14282265 + 14282245 14282285 41 GAGACTGCAATGAGGATCTGGAGCAGGTGGAGAAGTGCATG GAGACTGCAATGAGGATCTTGAGCAGGTGGAGAAGTGCATG < 41bp 0.421488526255842 0.722074351451044 NA NA prediction 0.444148702902088 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14282265 chr11:14282264 . . 0 20 hm7G_associated_SNPs_25088 0 0 0 0 1 SPON1 chr11:14282298 5'GT 14282298 Upstream 35bp 22973 chr4 186274691 186274691 1 + G T SKCM 186274692 + 186274672 186274712 41 TATGGTGATGATGTGGATGGGAGGAAAGACGCCTTGGCTGA TATGGTGATGATGTGGATGTGAGGAAAGACGCCTTGGCTGA < 41bp 0.663486589451667 0.885560103446715 NA NA prediction 0.444147027990097 Functional Gain - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186274692 chr4:186274691 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_25089 0 0 1 0 2 SNX25 chr4:186274639 3'AG 186274639 Downstream 53bp 22974 chr4 186274691 186274691 1 + G T SKCM 186274692 + 186274672 186274712 41 TATGGTGATGATGTGGATGGGAGGAAAGACGCCTTGGCTGA TATGGTGATGATGTGGATGTGAGGAAAGACGCCTTGGCTGA < 41bp 0.663486589451667 0.885560103446715 NA NA prediction 0.444147027990097 Functional Gain - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186274692 chr4:186274691 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_25089 0 0 1 0 2 SNX25 chr4:186274756 5'GT 186274756 Upstream 66bp 22975 chr2 241631533 241631533 1 + G T LUSC 241631534 + 241631514 241631554 41 GCCCTGGGCTGGGGACTTTGGGCCTGACCTGCTGCTCACCC GCCCTGGGCTGGGGACTTTTGGCCTGACCTGCTGCTCACCC < 41bp 0.382458746727629 0.722065027781283 NA NA prediction 0.444130055562565 Functional Gain - AQP12A ENSG00000184945 CDS Human protein_coding chr2:241631534 chr2:241631533 nonsynonymous SNV 0.099 4 20 hm7G_associated_SNPs_25090 0 0 0 0 1 AQP12A chr2:241631491 3'AG 241631491 Downstream 43bp 22976 chr7 116862946 116862946 1 + G T UCEC 116862947 + 116862927 116862967 41 TTCTGCTCGGCAGAGTTCAGGGACTGGAATTGCAAGAGTAT TTCTGCTCGGCAGAGTTCATGGACTGGAATTGCAAGAGTAT < 41bp 0.414340461275208 0.722034163899944 NA NA prediction 0.444068327799888 Functional Gain - ST7 ENSG00000004866 CDS Human protein_coding chr7:116862947 chr7:116862946 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_25096 0 0 0 0 1 ST7 chr7:116862915 3'AG 116862915 Downstream 32bp 22977 chr16 89783151 89783151 1 - C T STAD 89783150 - 89783130 89783170 41 TGGAGAGGGCCCAGTCGACGGCCGCCAAGCTTGGTGGGTCT TGGAGAGGGCCCAGTCGACAGCCGCCAAGCTTGGTGGGTCT < 41bp 0.522057755623297 0.744088852106766 NA NA prediction 0.444062192966939 Functional Gain - VPS9D1 ENSG00000075399 CDS Human protein_coding chr16:89783150 chr16:89783151 synonymous SNV . 0 20 hm7G_associated_SNPs_25097 0 0 1 0 2 VPS9D1 chr16:89783138 5'GT 89783138 Upstream 14bp 22978 chr16 89783151 89783151 1 - C T STAD 89783150 - 89783130 89783170 41 TGGAGAGGGCCCAGTCGACGGCCGCCAAGCTTGGTGGGTCT TGGAGAGGGCCCAGTCGACAGCCGCCAAGCTTGGTGGGTCT < 41bp 0.522057755623297 0.744088852106766 NA NA prediction 0.444062192966939 Functional Gain - VPS9D1 ENSG00000075399 CDS Human protein_coding chr16:89783150 chr16:89783151 synonymous SNV . 0 20 hm7G_associated_SNPs_25097 0 0 1 0 2 VPS9D1 chr16:89783230 3'AG 89783230 Downstream 80bp 22979 chr12 44165082 44165082 1 + G T LIHC 44165083 + 44165063 44165103 41 TCTGAATTACTGTTTGACTGGGGCACCACAAATTGCACAGT TCTGAATTACTGTTTGACTTGGGCACCACAAATTGCACAGT < 41bp 0.60340363713493 0.825421087425696 NA NA prediction 0.444034900581532 Functional Gain - IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44165083 chr12:44165082 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_25099 0 0 1 0 2 IRAK4 chr12:44165023 3'AG 44165023 Downstream 60bp 22980 chr12 44165082 44165082 1 + G T LIHC 44165083 + 44165063 44165103 41 TCTGAATTACTGTTTGACTGGGGCACCACAAATTGCACAGT TCTGAATTACTGTTTGACTTGGGCACCACAAATTGCACAGT < 41bp 0.60340363713493 0.825421087425696 NA NA prediction 0.444034900581532 Functional Gain - IRAK4 ENSG00000198001 CDS Human protein_coding chr12:44165083 chr12:44165082 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_25099 0 0 1 0 2 IRAK4 chr12:44165168 5'GT 44165168 Upstream 87bp 22981 chr6 44107307 44107307 1 + G A SKCM 44107308 + 44107288 44107328 41 TGTGGGCGTCCTCTCCGTAGGCATCGTGCTGCCTGTCAACT TGTGGGCGTCCTCTCCGTAAGCATCGTGCTGCCTGTCAACT < 41bp 0.509933821034883 0.731927840768692 NA NA prediction 0.443988039467619 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44107308 chr6:44107307 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_25101 0 0 1 0 1 TMEM63B chr6:44107346 5'GT 44107346 Upstream 40bp 22982 chr1 154316660 154316660 1 + G T LUSC 154316661 + 154316641 154316681 41 AGGACAAACTTCAGCAAGGGGTTCCAGAGACCATTGCCCTC AGGACAAACTTCAGCAAGGTGTTCCAGAGACCATTGCCCTC < 41bp 0.381768114466171 0.721990416464356 NA NA prediction 0.443980832928711 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154316661 chr1:154316660 synonymous SNV . 0 20 hm7G_associated_SNPs_25102 0 0 1 0 2 ATP8B2 chr1:154316619 3'AG 154316619 Downstream 42bp 22983 chr1 154316660 154316660 1 + G T LUSC 154316661 + 154316641 154316681 41 AGGACAAACTTCAGCAAGGGGTTCCAGAGACCATTGCCCTC AGGACAAACTTCAGCAAGGTGTTCCAGAGACCATTGCCCTC < 41bp 0.381768114466171 0.721990416464356 NA NA prediction 0.443980832928711 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154316661 chr1:154316660 synonymous SNV . 0 20 hm7G_associated_SNPs_25102 0 0 1 0 2 ATP8B2 chr1:154316730 5'GT 154316730 Upstream 71bp 22984 chr1 196946829 196946829 1 + G T UCEC 196946830 + 196946810 196946850 41 AGTGTAATCCTAATCTCATGGGTATCCACTGTTGGGGGAGA AGTGTAATCCTAATCTCATTGGTATCCACTGTTGGGGGAGA < 41bp 0.409619213207478 0.721987677081171 NA NA prediction 0.443975354162342 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196946830 chr1:196946829 nonsynonymous SNV 0.243 3 20 hm7G_associated_SNPs_25103 0 0 0 0 1 CFHR5 chr1:196946852 5'GT 196946852 Upstream 24bp 22985 chr3 99879332 99879332 1 + G T LUAD 99879333 + 99879313 99879353 41 GAGAATACCACCAAGACCAGGAAAAGAAGAAAGGTAATATT GAGAATACCACCAAGACCATGAAAAGAAGAAAGGTAATATT < 41bp 0.424268114313118 0.721951752495676 NA NA prediction 0.443903504991352 Functional Gain - CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99879333 chr3:99879332 nonsynonymous SNV 0.965 2 20 hm7G_associated_SNPs_25107 0 0 1 0 2 CMSS1 chr3:99879274 3'AG 99879274 Downstream 59bp 22986 chr3 99879332 99879332 1 + G T LUAD 99879333 + 99879313 99879353 41 GAGAATACCACCAAGACCAGGAAAAGAAGAAAGGTAATATT GAGAATACCACCAAGACCATGAAAAGAAGAAAGGTAATATT < 41bp 0.424268114313118 0.721951752495676 NA NA prediction 0.443903504991352 Functional Gain - CMSS1 ENSG00000184220 CDS Human protein_coding chr3:99879333 chr3:99879332 nonsynonymous SNV 0.965 2 20 hm7G_associated_SNPs_25107 0 0 1 0 2 CMSS1 chr3:99879345 5'GT 99879345 Upstream 14bp 22987 chr7 75608805 75608805 1 + G T UCEC 75608806 + 75608786 75608826 41 GTTCTACGGCTCCCAGACGGGGACTGCAGAGGAGTTTGCCA GTTCTACGGCTCCCAGACGTGGACTGCAGAGGAGTTTGCCA < 41bp 0.687473794423544 0.909412659040401 NA NA prediction 0.443877729233714 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75608806 chr7:75608805 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_25110 0 0 1 1 2 POR chr7:75608769 3'AG 75608769 Downstream 37bp 22988 chr7 75608805 75608805 1 + G T UCEC 75608806 + 75608786 75608826 41 GTTCTACGGCTCCCAGACGGGGACTGCAGAGGAGTTTGCCA GTTCTACGGCTCCCAGACGTGGACTGCAGAGGAGTTTGCCA < 41bp 0.687473794423544 0.909412659040401 NA NA prediction 0.443877729233714 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75608806 chr7:75608805 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_25110 0 0 1 1 2 POR chr7:75608897 5'GT 75608897 Upstream 93bp 22989 chrX 70523727 70523727 1 + G T HNSC 70523728 + 70523708 70523748 41 GCATTCTTGGCACAACCAGGGTGCAGAGTCGGTAGACATGA GCATTCTTGGCACAACCAGTGTGCAGAGTCGGTAGACATGA < 41bp 0.672054826860343 0.893989351028548 NA NA prediction 0.443869048336411 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70523728 chrX:70523727 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_25114 0 0 1 0 2 ITGB1BP2 chrX:70523662 3'AG 70523662 Downstream 66bp 22990 chrX 70523727 70523727 1 + G T HNSC 70523728 + 70523708 70523748 41 GCATTCTTGGCACAACCAGGGTGCAGAGTCGGTAGACATGA GCATTCTTGGCACAACCAGTGTGCAGAGTCGGTAGACATGA < 41bp 0.672054826860343 0.893989351028548 NA NA prediction 0.443869048336411 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70523728 chrX:70523727 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_25114 0 0 1 0 2 ITGB1BP2 chrX:70523761 5'GT 70523761 Upstream 35bp 22991 chr4 15437551 15437551 1 + G T UCEC 15437552 + 15437532 15437572 41 TGGTCGCATCGGCCTTCCAGGAAGAGATGGTAGAGACGGCA TGGTCGCATCGGCCTTCCATGAAGAGATGGTAGAGACGGCA < 41bp 0.675624869082139 0.897559346767386 NA NA prediction 0.443868955370493 Functional Gain - C1QTNF7 ENSG00000163145 CDS Human protein_coding chr4:15437552 chr4:15437551 stopgain 0.998 1 20 hm7G_associated_SNPs_25115 0 0 0 0 1 C1QTNF7 chr4:15437605 5'GT 15437605 Upstream 55bp 22992 chr14 104571006 104571006 1 + G A SKCM 104571007 + 104570987 104571027 41 GCTTCGACATGACATCGGAGGCCGCCCTGGCCAAGCTATCG GCTTCGACATGACATCGGAAGCCGCCCTGGCCAAGCTATCG < 41bp 0.514004261968348 0.735928075639404 NA NA prediction 0.443847627342113 Functional Gain - ASPG ENSG00000166183 CDS Human protein_coding chr14:104571007 chr14:104571006 synonymous SNV . 0 20 hm7G_associated_SNPs_25118 0 0 0 0 2 ASPG chr14:104570959 3'AG 104570959 Downstream 48bp 22993 chr14 104571006 104571006 1 + G A SKCM 104571007 + 104570987 104571027 41 GCTTCGACATGACATCGGAGGCCGCCCTGGCCAAGCTATCG GCTTCGACATGACATCGGAAGCCGCCCTGGCCAAGCTATCG < 41bp 0.514004261968348 0.735928075639404 NA NA prediction 0.443847627342113 Functional Gain - ASPG ENSG00000166183 CDS Human protein_coding chr14:104571007 chr14:104571006 synonymous SNV . 0 20 hm7G_associated_SNPs_25118 0 0 0 0 2 ASPG chr14:104571072 5'GT 104571072 Upstream 67bp 22994 chr7 123254559 123254559 1 + G T LUAD 123254560 + 123254540 123254580 41 CAAAATTATATGCAGGAATGGATACTAATGATGACCCTGAT CAAAATTATATGCAGGAATTGATACTAATGATGACCCTGAT < 41bp 0.648880818036462 0.870777709309013 NA NA prediction 0.443793782545102 Functional Gain - ASB15 ENSG00000146809 CDS Human antisense chr7:123254560 chr7:123254559 nonsynonymous SNV 0.922 2 20 hm7G_associated_SNPs_25124 0 0 0 0 1 LOC102724555 chr7:123254555 3'AG 123254555 Downstream 5bp 22995 chr12 108589958 108589958 1 + G T HNSC 108589959 + 108589939 108589979 41 CTGGAGCCGAGCCCTCAAGGGGAGGGTTGTCCGGGAGAAGG CTGGAGCCGAGCCCTCAAGTGGAGGGTTGTCCGGGAGAAGG < 41bp 0.372432372485589 0.721893554598703 NA NA prediction 0.443787109197406 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108589959 chr12:108589958 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_25125 0 0 0 0 1 WSCD2 chr12:108589991 5'GT 108589991 Upstream 34bp 22996 chr20 30898858 30898858 1 + G T LUAD 30898859 + 30898839 30898879 41 AACTGGAGATTGAGAAGCGGGCCATTGTAGAGGATCACAGC AACTGGAGATTGAGAAGCGTGCCATTGTAGAGGATCACAGC < 41bp 0.677559594508335 0.899448998575124 NA NA prediction 0.443778808133579 Functional Gain - KIF3B ENSG00000101350 CDS Human protein_coding chr20:30898859 chr20:30898858 synonymous SNV . 0 20 hm7G_associated_SNPs_25126 0 0 1 0 1 KIF3B chr20:30898832 3'AG 30898832 Downstream 27bp 22997 chr9 135862799 135862799 1 + G A COAD 135862800 + 135862780 135862820 41 ACTTGGCCAGGATGGCCCCGGCACCAGGTACCCCGCTGTGA ACTTGGCCAGGATGGCCCCAGCACCAGGTACCCCGCTGTGA < 41bp 0.50427999654834 0.72616083352954 NA NA prediction 0.4437616739624 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135862800 chr9:135862799 synonymous SNV . 0 20 hm7G_associated_SNPs_25127 0 0 0 0 1 GFI1B chr9:135862806 5'GT 135862806 Upstream 8bp 22998 chr19 55019195 55019195 1 + G T ESCA 55019196 + 55019176 55019216 41 CATGTGCCGGGGCCCGGTTGGGGTTCAAACATTCCGCCTGG CATGTGCCGGGGCCCGGTTTGGGTTCAAACATTCCGCCTGG < 41bp 0.387584282146145 0.721873689413566 NA NA prediction 0.443747378827131 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019196 chr19:55019195 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_25129 0 0 0 0 1 LAIR2 chr19:55019106 3'AG 55019106 Downstream 90bp 22999 chr4 71255398 71255398 1 + G T COAD 71255399 + 71255379 71255419 41 GCCTGGTGAGAGTCAAAGAGGCCCCAGGGGACCATATCCAC GCCTGGTGAGAGTCAAAGATGCCCCAGGGGACCATATCCAC < 41bp 0.662019504844168 0.88384637374824 NA NA prediction 0.443653737808144 Functional Gain - SMR3B ENSG00000171201 CDS Human protein_coding chr4:71255399 chr4:71255398 nonsynonymous SNV 0.043 2 20 hm7G_associated_SNPs_25135 0 0 0 0 1 SMR3B chr4:71255380 3'AG 71255380 Downstream 19bp 23000 chr11 107965624 107965624 1 + G T LIHC 107965625 + 107965605 107965645 41 TCTCACTTCCTACTGAACTGGAGGACTTGATACCGGAAGTA TCTCACTTCCTACTGAACTTGAGGACTTGATACCGGAAGTA < 41bp 0.396159918387749 0.721801900170103 NA NA prediction 0.443603800340206 Functional Gain - CUL5 ENSG00000166266 CDS Human protein_coding chr11:107965625 chr11:107965624 synonymous SNV . 0 20 hm7G_associated_SNPs_25137 0 0 1 0 2 CUL5 chr11:107965539 3'AG 107965539 Downstream 86bp 23001 chr11 107965624 107965624 1 + G T LIHC 107965625 + 107965605 107965645 41 TCTCACTTCCTACTGAACTGGAGGACTTGATACCGGAAGTA TCTCACTTCCTACTGAACTTGAGGACTTGATACCGGAAGTA < 41bp 0.396159918387749 0.721801900170103 NA NA prediction 0.443603800340206 Functional Gain - CUL5 ENSG00000166266 CDS Human protein_coding chr11:107965625 chr11:107965624 synonymous SNV . 0 20 hm7G_associated_SNPs_25137 0 0 1 0 2 CUL5 chr11:107965714 5'GT 107965714 Upstream 91bp 23002 chr11 64854053 64854053 1 + G T LIHC 64854054 + 64854034 64854074 41 AGCTGGCCACAGTCAACTGGGCCCGGGCAGGACTGGGCCTC AGCTGGCCACAGTCAACTGTGCCCGGGCAGGACTGGGCCTC < 41bp 0.68740468258959 0.909193188402149 NA NA prediction 0.443577011625119 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854054 chr11:64854053 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25139 0 0 1 0 1 ZFPL1 chr11:64854080 5'GT 64854080 Upstream 28bp 23003 chr7 156437450 156437450 1 + G T LUSC 156437451 + 156437431 156437471 41 AACCGCCGCCGTTGACTTTGGGTAAGCTGACGTAGTCATTC AACCGCCGCCGTTGACTTTTGGTAAGCTGACGTAGTCATTC < 41bp 0.401649989931125 0.721778227016709 NA NA prediction 0.443556454033419 Functional Gain - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156437451 chr7:156437450 nonsynonymous SNV 0.921 4 20 hm7G_associated_SNPs_25142 0 0 0 0 1 RNF32 chr7:156437451 5'GT 156437451 Upstream 2bp 23004 chr7 100202751 100202751 1 + G A rs144010281 100202752 + 100202732 100202772 41 GGCGGCTGGAGAAGGCCCAGGGAACCCTGACCACGCCCAAC GGCGGCTGGAGAAGGCCCAAGGAACCCTGACCACGCCCAAC < 41bp 0.537832110161361 0.75959266186299 NA NA prediction 0.443521103403258 Functional Gain - PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100202752 chr7:100202751 synonymous SNV . 0 20 hm7G_associated_SNPs_25144 0 0 1 0 2 PCOLCE chr7:100202714 3'AG 100202714 Downstream 38bp 23005 chr7 100202751 100202751 1 + G A rs144010281 100202752 + 100202732 100202772 41 GGCGGCTGGAGAAGGCCCAGGGAACCCTGACCACGCCCAAC GGCGGCTGGAGAAGGCCCAAGGAACCCTGACCACGCCCAAC < 41bp 0.537832110161361 0.75959266186299 NA NA prediction 0.443521103403258 Functional Gain - PCOLCE ENSG00000106333 CDS Human protein_coding chr7:100202752 chr7:100202751 synonymous SNV . 0 20 hm7G_associated_SNPs_25144 0 0 1 0 2 PCOLCE chr7:100202838 5'GT 100202838 Upstream 88bp 23006 chr1 93704885 93704885 1 + G T THCA 93704886 + 93704866 93704906 41 GGCAAGTAAAGATTGAGATGGATCAGTACAAAGAAGAGCTG GGCAAGTAAAGATTGAGATTGATCAGTACAAAGAAGAGCTG < 41bp 0.653041605516399 0.874800206460737 NA NA prediction 0.443517201888676 Functional Gain - CCDC18 ENSG00000122483 CDS Human protein_coding chr1:93704886 chr1:93704885 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25145 0 0 1 0 1 CCDC18 chr1:93704867 3'AG 93704867 Downstream 19bp 23007 chr16 2100446 2100446 1 + G T UCEC 2100447 + 2100427 2100467 41 CAATCGCATCCGGATGATAGGGCAGATTTGTGAAGTCGCAA CAATCGCATCCGGATGATATGGCAGATTTGTGAAGTCGCAA < 41bp 0.375985382381534 0.721750306932417 NA NA prediction 0.443500613864835 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2100447 chr16:2100446 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_25147 0 0 1 0 2 TSC2 chr16:2100401 3'AG 2100401 Downstream 46bp 23008 chr16 2100446 2100446 1 + G T UCEC 2100447 + 2100427 2100467 41 CAATCGCATCCGGATGATAGGGCAGATTTGTGAAGTCGCAA CAATCGCATCCGGATGATATGGCAGATTTGTGAAGTCGCAA < 41bp 0.375985382381534 0.721750306932417 NA NA prediction 0.443500613864835 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2100447 chr16:2100446 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_25147 0 0 1 0 2 TSC2 chr16:2100487 5'GT 2100487 Upstream 42bp 23009 chr3 113517239 113517239 1 + G T UCEC 113517240 + 113517220 113517260 41 CTCTGAGGACGAAAGCTAAGGAAATTCTGCAGGAAGAAGAA CTCTGAGGACGAAAGCTAATGAAATTCTGCAGGAAGAAGAA < 41bp 0.674153229677958 0.895883356527374 NA NA prediction 0.443460253698831 Functional Gain - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113517240 chr3:113517239 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25150 0 0 1 0 1 ATP6V1A chr3:113517293 5'GT 113517293 Upstream 55bp 23010 chr18 13737080 13737080 1 + G T UCEC 13737081 + 13737061 13737101 41 GGACCTGGGATGTGGTAAAGGTGGAGATTTGCTGAAATGGA GGACCTGGGATGTGGTAAATGTGGAGATTTGCTGAAATGGA < 41bp 0.404824202682043 0.721719610467661 NA NA prediction 0.443439220935322 Functional Gain - RNMT ENSG00000101654 CDS Human protein_coding chr18:13737081 chr18:13737080 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25151 0 0 1 0 2 RNMT chr18:13737009 3'AG 13737009 Downstream 72bp 23011 chr18 13737080 13737080 1 + G T UCEC 13737081 + 13737061 13737101 41 GGACCTGGGATGTGGTAAAGGTGGAGATTTGCTGAAATGGA GGACCTGGGATGTGGTAAATGTGGAGATTTGCTGAAATGGA < 41bp 0.404824202682043 0.721719610467661 NA NA prediction 0.443439220935322 Functional Gain - RNMT ENSG00000101654 CDS Human protein_coding chr18:13737081 chr18:13737080 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25151 0 0 1 0 2 RNMT chr18:13737134 5'GT 13737134 Upstream 55bp 23012 chr12 57389015 57389015 1 + G A GBM 57389016 + 57388996 57389036 41 GTCAGTGAAACCCAGCTGGGGGCCTGGCCCCTCGGAGGGGG GTCAGTGAAACCCAGCTGGAGGCCTGGCCCCTCGGAGGGGG < 41bp 0.520592909206887 0.742305307060293 NA NA prediction 0.443424795706813 Functional Gain - GPR182 ENSG00000166856 CDS Human protein_coding chr12:57389016 chr12:57389015 nonsynonymous SNV 0.022 0 20 hm7G_associated_SNPs_25153 0 0 0 0 1 GPR182 chr12:57388978 3'AG 57388978 Downstream 38bp 23013 chrX 49098488 49098488 1 + G A COAD 49098489 + 49098469 49098509 41 CACCAACCCTCAGGACCTGGGCTATCCCTTGGAGCTTGGCT CACCAACCCTCAGGACCTGAGCTATCCCTTGGAGCTTGGCT < 41bp 0.532601248053221 0.754308925447253 NA NA prediction 0.443415354788063 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49098489 chrX:49098488 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_25154 0 0 0 0 1 CCDC22 chrX:49098482 3'AG 49098482 Downstream 7bp 23014 chr3 196386706 196386706 1 + G T rs147340258 196386707 + 196386687 196386727 41 ACGCCCGGATGCTCACCCTGGATGCCAACCCTCTCAAGACC ACGCCCGGATGCTCACCCTTGATGCCAACCCTCTCAAGACC < 41bp 0.375034311557704 0.721707674983463 NA NA prediction 0.443415349966926 Functional Gain - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386707 chr3:196386706 synonymous SNV . 0 20 hm7G_associated_SNPs_25155 0 0 0 0 1 NRROS chr3:196386623 3'AG 196386623 Downstream 84bp 23015 chr7 54612423 54612423 1 + G T LUAD 54612424 + 54612404 54612444 41 GTGTATCTGGAGATCCAATGGTGGTTCCTGCGGGGGCCGGA GTGTATCTGGAGATCCAATTGTGGTTCCTGCGGGGGCCGGA < 41bp 0.679252479737398 0.900955849650075 NA NA prediction 0.443406739825352 Functional Gain - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54612424 chr7:54612423 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25156 0 0 0 0 1 VSTM2A chr7:54612481 5'GT 54612481 Upstream 59bp 23016 chr19 45316531 45316531 1 + G A CESC 45316532 + 45316512 45316552 41 CACCTGCAACAGCCGGAACGGGAACCCGGCCCCCAAGATCA CACCTGCAACAGCCGGAACAGGAACCCGGCCCCCAAGATCA < 41bp 0.510524424329119 0.732227686171565 NA NA prediction 0.443406523684891 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45316532 chr19:45316531 nonsynonymous SNV 0.093 3 20 hm7G_associated_SNPs_25157 0 0 0 0 2 BCAM chr19:45316507 3'AG 45316507 Downstream 25bp 23017 chr19 45316531 45316531 1 + G A CESC 45316532 + 45316512 45316552 41 CACCTGCAACAGCCGGAACGGGAACCCGGCCCCCAAGATCA CACCTGCAACAGCCGGAACAGGAACCCGGCCCCCAAGATCA < 41bp 0.510524424329119 0.732227686171565 NA NA prediction 0.443406523684891 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45316532 chr19:45316531 nonsynonymous SNV 0.093 3 20 hm7G_associated_SNPs_25157 0 0 0 0 2 BCAM chr19:45316603 5'GT 45316603 Upstream 73bp 23018 chr2 26667650 26667650 1 + G T UCEC 26667651 + 26667631 26667671 41 TGAATGAAGAGGAGGCGAAGGACCTAATAGCCAGAGCCTTT TGAATGAAGAGGAGGCGAATGACCTAATAGCCAGAGCCTTT < 41bp 0.67727812114546 0.898979750493565 NA NA prediction 0.44340325869621 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26667651 chr2:26667650 nonsynonymous SNV 0.398 4 20 hm7G_associated_SNPs_25158 0 0 0 0 1 DRC1 chr2:26667584 3'AG 26667584 Downstream 67bp 23019 chr7 66514966 66514966 1 + G T KIRP 66514967 + 66514947 66514987 41 ACAGCAGGAAGAGAAGTCTGGTTTGTTCAGGAACATGGGGA ACAGCAGGAAGAGAAGTCTTGTTTGTTCAGGAACATGGGGA < 41bp 0.388392576320326 0.721699814669018 NA NA prediction 0.443399629338036 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66514967 chr7:66514966 nonsynonymous SNV 0.034 1 20 hm7G_associated_SNPs_25159 0 0 0 0 2 TYW1 chr7:66514936 3'AG 66514936 Downstream 31bp 23020 chr7 66514966 66514966 1 + G T KIRP 66514967 + 66514947 66514987 41 ACAGCAGGAAGAGAAGTCTGGTTTGTTCAGGAACATGGGGA ACAGCAGGAAGAGAAGTCTTGTTTGTTCAGGAACATGGGGA < 41bp 0.388392576320326 0.721699814669018 NA NA prediction 0.443399629338036 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66514967 chr7:66514966 nonsynonymous SNV 0.034 1 20 hm7G_associated_SNPs_25159 0 0 0 0 2 TYW1 chr7:66515053 5'GT 66515053 Upstream 88bp 23021 chr11 124829896 124829896 1 + G T UCEC 124829897 + 124829877 124829917 41 TATTCCAACAACAAGCCCAGGCTGTAAGTACCTGTTCTTTT TATTCCAACAACAAGCCCATGCTGTAAGTACCTGTTCTTTT < 41bp 0.403379407844244 0.721697570752677 NA NA prediction 0.443395141505355 Functional Gain - CCDC15 ENSG00000149548 CDS Human protein_coding chr11:124829897 chr11:124829896 nonsynonymous SNV 0.900 0 20 hm7G_associated_SNPs_25160 0 0 0 0 1 CCDC15 chr11:124829899 5'GT 124829899 Upstream 4bp 23022 chr20 60737912 60737912 1 + G A SKCM 60737913 + 60737893 60737933 41 CGCGGGACCCGCCTCGCAGGGCGTCCCCATGCAGGGGCAAG CGCGGGACCCGCCTCGCAGAGCGTCCCCATGCAGGGGCAAG < 41bp 0.503349694104311 0.72504179149389 NA NA prediction 0.443384194779157 Functional Gain - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60737913 chr20:60737912 nonsynonymous SNV 0.917 0 20 hm7G_associated_SNPs_25162 0 0 1 0 1 SS18L1 chr20:60737987 5'GT 60737987 Upstream 76bp 23023 chr3 101520151 101520151 1 + G T UCEC 101520152 + 101520132 101520172 41 TGTTTCCTCCCAGGTGACAGGAATTAGCCGAAATCCCTACT TGTTTCCTCCCAGGTGACATGAATTAGCCGAAATCCCTACT < 41bp 0.386860875891028 0.721686730089814 NA NA prediction 0.443373460179628 Functional Gain - NXPE3 ENSG00000144815 CDS Human protein_coding chr3:101520152 chr3:101520151 stopgain 0.414 0 20 hm7G_associated_SNPs_25163 0 0 1 0 1 NXPE3 chr3:101520079 3'AG 101520079 Downstream 73bp 23024 chr19 54695637 54695637 1 + G A UCEC 54695638 + 54695618 54695658 41 AGAGCGCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGTCAG AGAGCGCCTTGGCAGCTGAAGCCCGGGAGACCCGTCGTCAG < 41bp 0.506552752889122 0.728236954196095 NA NA prediction 0.443368402613946 Functional Gain - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54695638 chr19:54695637 synonymous SNV . 0 20 hm7G_associated_SNPs_25164 0 0 1 0 1 TSEN34 chr19:54695572 3'AG 54695572 Downstream 66bp 23025 chr17 78166360 78166360 1 + G T UCEC 78166361 + 78166341 78166381 41 GAGAAGCAGCGGCTGGTGCGGATGCATGCCATCTGCCCCAG GAGAAGCAGCGGCTGGTGCTGATGCATGCCATCTGCCCCAG < 41bp 0.366071982854703 0.721683950896698 NA NA prediction 0.443367901793395 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166361 chr17:78166360 nonsynonymous SNV 0.009 2 20 hm7G_associated_SNPs_25165 0 0 0 0 2 CARD14 chr17:78166302 3'AG 78166302 Downstream 59bp 23026 chr17 78166360 78166360 1 + G T UCEC 78166361 + 78166341 78166381 41 GAGAAGCAGCGGCTGGTGCGGATGCATGCCATCTGCCCCAG GAGAAGCAGCGGCTGGTGCTGATGCATGCCATCTGCCCCAG < 41bp 0.366071982854703 0.721683950896698 NA NA prediction 0.443367901793395 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78166361 chr17:78166360 nonsynonymous SNV 0.009 2 20 hm7G_associated_SNPs_25165 0 0 0 0 2 CARD14 chr17:78166418 5'GT 78166418 Upstream 59bp 23027 chr11 44102744 44102744 1 + G T LUSC 44102745 + 44102725 44102765 41 GCAGGACTTCGGGATGTCTGGGCTCCGCTTTGGCACGCTGT GCAGGACTTCGGGATGTCTTGGCTCCGCTTTGGCACGCTGT < 41bp 0.377372442981803 0.721680146907796 NA NA prediction 0.443360293815592 Functional Gain - ACCS ENSG00000110455 CDS Human protein_coding chr11:44102745 chr11:44102744 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_25167 0 0 1 0 1 ACCS chr11:44102729 3'AG 44102729 Downstream 16bp 23028 chr1 6511792 6511792 1 + G A SKCM 6511793 + 6511773 6511813 41 ACAGTGTTCTCAGGCATCGGGCAGCCGGCCTTCCAGGTAGG ACAGTGTTCTCAGGCATCGAGCAGCCGGCCTTCCAGGTAGG < 41bp 0.506819747917123 0.72849662022324 NA NA prediction 0.443353744612234 Functional Gain - ESPN ENSG00000187017 CDS Human protein_coding chr1:6511793 chr1:6511792 nonsynonymous SNV 0.951 3 20 hm7G_associated_SNPs_25168 0 0 1 0 1 ESPN chr1:6511808 5'GT 6511808 Upstream 17bp 23029 chrX 122538600 122538600 1 + G T LIHC 122538601 + 122538581 122538621 41 AGAAGAACCATGAGCAACTGGAAGGAAATGAACGATATGAA AGAAGAACCATGAGCAACTTGAAGGAAATGAACGATATGAA < 41bp 0.398450957613535 0.721674780572803 NA NA prediction 0.443349561145606 Functional Gain - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122538601 chrX:122538600 synonymous SNV . 0 20 hm7G_associated_SNPs_25169 0 0 0 1 1 GRIA3 chrX:122538559 3'AG 122538559 Downstream 42bp 23030 chr19 547378 547378 1 + G A rs146522321 547379 + 547359 547399 41 AAATGGCTCCCACCTGTGCGGGGGTGTCCTGGTGCACCCAA AAATGGCTCCCACCTGTGCAGGGGTGTCCTGGTGCACCCAA < 41bp 0.491865169659491 0.721672089333319 NA NA prediction 0.443344178666638 Functional Gain - GZMM ENSG00000197540 CDS Human protein_coding chr19:547379 chr19:547378 nonsynonymous SNV 0.020 4 20 hm7G_associated_SNPs_25170 0 0 0 0 3 GZMM chr19:547280 3'AG 547280 Downstream 99bp 23031 chr19 547378 547378 1 + G A rs146522321 547379 + 547359 547399 41 AAATGGCTCCCACCTGTGCGGGGGTGTCCTGGTGCACCCAA AAATGGCTCCCACCTGTGCAGGGGTGTCCTGGTGCACCCAA < 41bp 0.491865169659491 0.721672089333319 NA NA prediction 0.443344178666638 Functional Gain - GZMM ENSG00000197540 CDS Human protein_coding chr19:547379 chr19:547378 nonsynonymous SNV 0.020 4 20 hm7G_associated_SNPs_25170 0 0 0 0 3 GZMM chr19:547284 3'AG 547284 Downstream 95bp 23032 chr19 547378 547378 1 + G A rs146522321 547379 + 547359 547399 41 AAATGGCTCCCACCTGTGCGGGGGTGTCCTGGTGCACCCAA AAATGGCTCCCACCTGTGCAGGGGTGTCCTGGTGCACCCAA < 41bp 0.491865169659491 0.721672089333319 NA NA prediction 0.443344178666638 Functional Gain - GZMM ENSG00000197540 CDS Human protein_coding chr19:547379 chr19:547378 nonsynonymous SNV 0.020 4 20 hm7G_associated_SNPs_25170 0 0 0 0 3 GZMM chr19:547436 5'GT 547436 Upstream 59bp 23033 chr2 99954021 99954021 1 + G T STAD 99954022 + 99954002 99954042 41 GCGCCATTGACAAGCAATGGGGAAGAAACAGAAAAACAAGA GCGCCATTGACAAGCAATGTGGAAGAAACAGAAAAACAAGA < 41bp 0.657651013498115 0.879297278221794 NA NA prediction 0.44329252944736 Functional Gain - EIF5B ENSG00000158417 CDS Human protein_coding chr2:99954022 chr2:99954021 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_25173 0 0 1 0 1 EIF5B chr2:99954052 5'GT 99954052 Upstream 32bp 23034 chr2 108921890 108921890 1 + G T KIRP 108921891 + 108921871 108921911 41 GACCCAAAGCATGAAATTCGGAAGGTGATGCAGTTCATGGG GACCCAAAGCATGAAATTCTGAAGGTGATGCAGTTCATGGG < 41bp 0.658578010483828 0.880209696799435 NA NA prediction 0.443263372631214 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108921891 chr2:108921890 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_25175 0 0 0 0 1 SULT1C2 chr2:108921871 3'AG 108921871 Downstream 20bp 23035 chr4 42069145 42069145 1 + G T UCEC 42069146 + 42069126 42069166 41 CAAATGTGATATTATTGGAGGATACTGCTGCAGTCTTGGGA CAAATGTGATATTATTGGATGATACTGCTGCAGTCTTGGGA < 41bp 0.667122386774792 0.88874688860969 NA NA prediction 0.443249003669797 Functional Gain - SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42069146 chr4:42069145 nonsynonymous SNV 0.745 4 20 hm7G_associated_SNPs_25176 0 0 1 0 2 SLC30A9 chr4:42069102 3'AG 42069102 Downstream 44bp 23036 chr4 42069145 42069145 1 + G T UCEC 42069146 + 42069126 42069166 41 CAAATGTGATATTATTGGAGGATACTGCTGCAGTCTTGGGA CAAATGTGATATTATTGGATGATACTGCTGCAGTCTTGGGA < 41bp 0.667122386774792 0.88874688860969 NA NA prediction 0.443249003669797 Functional Gain - SLC30A9 ENSG00000014824 CDS Human protein_coding chr4:42069146 chr4:42069145 nonsynonymous SNV 0.745 4 20 hm7G_associated_SNPs_25176 0 0 1 0 2 SLC30A9 chr4:42069209 5'GT 42069209 Upstream 65bp 23037 chr6 88767413 88767413 1 + G T UCEC 88767414 + 88767394 88767434 41 ACGGGTAGAAGAATGCCGTGGACCAACAGATTGTGGCTGTG ACGGGTAGAAGAATGCCGTTGACCAACAGATTGTGGCTGTG < 41bp 0.675420247436736 0.897040766692019 NA NA prediction 0.443241038510566 Functional Gain - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88767414 chr6:88767413 stopgain 0.782 1 20 hm7G_associated_SNPs_25178 0 0 0 0 2 SPACA1 chr6:88767330 3'AG 88767330 Downstream 84bp 23038 chr6 88767413 88767413 1 + G T UCEC 88767414 + 88767394 88767434 41 ACGGGTAGAAGAATGCCGTGGACCAACAGATTGTGGCTGTG ACGGGTAGAAGAATGCCGTTGACCAACAGATTGTGGCTGTG < 41bp 0.675420247436736 0.897040766692019 NA NA prediction 0.443241038510566 Functional Gain - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88767414 chr6:88767413 stopgain 0.782 1 20 hm7G_associated_SNPs_25178 0 0 0 0 2 SPACA1 chr6:88767431 5'GT 88767431 Upstream 19bp 23039 chr1 241753535 241753535 1 + G T LUSC 241753536 + 241753516 241753556 41 CCAGAATAAGATACCATGAGGCTGTGCAGCGTTGGCATTGG CCAGAATAAGATACCATGATGCTGTGCAGCGTTGGCATTGG < 41bp 0.663417538471676 0.885024000046674 NA NA prediction 0.443212923149995 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241753536 chr1:241753535 nonsynonymous SNV 0.717 1 20 hm7G_associated_SNPs_25179 0 0 0 0 1 KMO chr1:241753506 3'AG 241753506 Downstream 30bp 23040 chrX 72667506 72667506 1 + G T LUAD 72667507 + 72667487 72667527 41 GCGGGTCGCTTGTCCCGACGGACGCAGGCGCCGCCAAGGCC GCGGGTCGCTTGTCCCGACTGACGCAGGCGCCGCCAAGGCC < 41bp 0.669507664626634 0.891112158352665 NA NA prediction 0.443208987452063 Functional Gain - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72667507 chrX:72667506 synonymous SNV . 0 20 hm7G_associated_SNPs_25180 0 0 0 0 1 CDX4 chrX:72667591 5'GT 72667591 Upstream 86bp 23041 chr17 56270743 56270743 1 + G A GBM 56270744 + 56270724 56270764 41 CTGGGCAGCATCAAGCAGCGGCTTCGCAGCGGTTCAGCCAG CTGGGCAGCATCAAGCAGCAGCTTCGCAGCGGTTCAGCCAG < 41bp 0.511316980202647 0.732900732507886 NA NA prediction 0.443167504610479 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56270744 chr17:56270743 nonsynonymous SNV 0.702 1 20 hm7G_associated_SNPs_25184 0 0 0 0 1 EPX chr17:56270732 3'AG 56270732 Downstream 12bp 23042 chr16 88871972 88871972 1 + G A rs145552478 88871973 + 88871953 88871993 41 CAGCATGGACACCATCGTGGGCATGCTCCACAACCGCTCCG CAGCATGGACACCATCGTGAGCATGCTCCACAACCGCTCCG < 41bp 0.518710721213703 0.740284757736041 NA NA prediction 0.443148073044676 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88871973 chr16:88871972 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_25185 1 0 1 0 1 CDT1 chr16:88872045 5'GT 88872045 Upstream 74bp 23043 chr16 3085357 3085357 1 + G A rs183014367 3085358 + 3085338 3085378 41 GCTGCAAGGCTAGGTCCTCGGGCTCCTCAGGCCCTGGGCCC GCTGCAAGGCTAGGTCCTCAGGCTCCTCAGGCCCTGGGCCC < 41bp 0.51595807968235 0.737527704300239 NA NA prediction 0.443139249235779 Functional Gain - BICDL2 ENSG00000162069 CDS Human protein_coding chr16:3085358 chr16:3085357 synonymous SNV . 0 20 hm7G_associated_SNPs_25186 0 0 0 0 1 BICDL2 chr16:3085339 3'AG 3085339 Downstream 19bp 23044 chr19 18112359 18112359 1 + G A rs532413635 18112360 + 18112340 18112380 41 GCCGCGGAGACCTACCTGCGGCGTCGGCAGCTGCTGCTCCG GCCGCGGAGACCTACCTGCAGCGTCGGCAGCTGCTGCTCCG < 41bp 0.516888646618665 0.738447247712192 NA NA prediction 0.443117202187054 Functional Gain - ARRDC2 ENSG00000105643 CDS Human protein_coding chr19:18112360 chr19:18112359 nonsynonymous SNV 0.897 0 20 hm7G_associated_SNPs_25187 0 0 0 0 1 ARRDC2 chr19:18112382 5'GT 18112382 Upstream 24bp 23045 chr1 67796458 67796458 1 + G T GBM 67796459 + 67796439 67796479 41 AAGGGAAGTTGGAGTGATTGGAGTGAATCATTGAGAGCACA AAGGGAAGTTGGAGTGATTTGAGTGAATCATTGAGAGCACA < 41bp 0.383636525061863 0.721556492920942 NA NA prediction 0.443112985841884 Functional Gain - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67796459 chr1:67796458 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_25188 0 0 0 0 1 IL12RB2 chr1:67796493 5'GT 67796493 Upstream 36bp 23046 chr8 24170902 24170902 1 + G T LIHC 24170903 + 24170883 24170923 41 ACTCTCATGTTTTTTCAGGGGCTACTTCAGTCAGGGGGATC ACTCTCATGTTTTTTCAGGTGCTACTTCAGTCAGGGGGATC < 41bp 0.399654683665962 0.721548063942652 NA NA prediction 0.443096127885305 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24170903 chr8:24170902 nonsynonymous SNV 0.946 3 20 hm7G_associated_SNPs_25192 0 0 0 0 1 ADAM28 chr8:24170901 3'AG 24170901 Downstream 2bp 23047 chr19 55817676 55817676 1 + G A rs12973169 55817677 + 55817657 55817697 41 GCTTCAGGGCCGAGTACAAGGCCAGTGGCGGCCCCTCCGTC GCTTCAGGGCCGAGTACAAAGCCAGTGGCGGCCCCTCCGTC < 41bp 0.522931419155718 0.744471660352917 NA NA prediction 0.443080482394399 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55817677 chr19:55817676 synonymous SNV . 0 20 hm7G_associated_SNPs_25193 0 0 0 0 1 BRSK1 chr19:55817620 3'AG 55817620 Downstream 57bp 23048 chr1 204092288 204092288 1 + G A rs117425740 204092289 + 204092269 204092309 41 CAAGGAGCGGCTGGAGGACGGCTGTGTGCACCCACTGGAGG CAAGGAGCGGCTGGAGGACAGCTGTGTGCACCCACTGGAGG < 41bp 0.518142534538126 0.739665144288817 NA NA prediction 0.443045219501381 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204092289 chr1:204092288 nonsynonymous SNV 0.199 1 20 hm7G_associated_SNPs_25199 0 0 1 0 2 SOX13 chr1:204092240 3'AG 204092240 Downstream 49bp 23049 chr1 204092288 204092288 1 + G A rs117425740 204092289 + 204092269 204092309 41 CAAGGAGCGGCTGGAGGACGGCTGTGTGCACCCACTGGAGG CAAGGAGCGGCTGGAGGACAGCTGTGTGCACCCACTGGAGG < 41bp 0.518142534538126 0.739665144288817 NA NA prediction 0.443045219501381 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204092289 chr1:204092288 nonsynonymous SNV 0.199 1 20 hm7G_associated_SNPs_25199 0 0 1 0 2 SOX13 chr1:204092336 5'GT 204092336 Upstream 49bp 23050 chr21 35497685 35497685 1 + G T COAD 35497686 + 35497666 35497706 41 GTACGATAGAGGCCCTGATGGACAGAGGAGCAATAGTGAGG GTACGATAGAGGCCCTGATTGACAGAGGAGCAATAGTGAGG < 41bp 0.674879949134943 0.896402161993722 NA NA prediction 0.443044425717558 Functional Gain - MRPS6 ENSG00000243927 CDS Human protein_coding chr21:35497686 chr21:35497685 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25200 0 0 1 0 2 MRPS6 chr21:35497641 3'AG 35497641 Downstream 45bp 23051 chr21 35497685 35497685 1 + G T COAD 35497686 + 35497666 35497706 41 GTACGATAGAGGCCCTGATGGACAGAGGAGCAATAGTGAGG GTACGATAGAGGCCCTGATTGACAGAGGAGCAATAGTGAGG < 41bp 0.674879949134943 0.896402161993722 NA NA prediction 0.443044425717558 Functional Gain - MRPS6 ENSG00000243927 CDS Human protein_coding chr21:35497686 chr21:35497685 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25200 0 0 1 0 2 MRPS6 chr21:35497780 5'GT 35497780 Upstream 96bp 23052 chr10 23399200 23399200 1 + G T LUAD 23399201 + 23399181 23399221 41 GGATCTACCTGAATAACAAGGAAGCAGGAATGTATCATTGC GGATCTACCTGAATAACAATGAAGCAGGAATGTATCATTGC < 41bp 0.672507141184288 0.894024473523767 NA NA prediction 0.443034664678958 Functional Gain - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399201 chr10:23399200 nonsynonymous SNV 0.800 1 20 hm7G_associated_SNPs_25201 0 0 1 0 2 MSRB2 chr10:23399171 3'AG 23399171 Downstream 30bp 23053 chr10 23399200 23399200 1 + G T LUAD 23399201 + 23399181 23399221 41 GGATCTACCTGAATAACAAGGAAGCAGGAATGTATCATTGC GGATCTACCTGAATAACAATGAAGCAGGAATGTATCATTGC < 41bp 0.672507141184288 0.894024473523767 NA NA prediction 0.443034664678958 Functional Gain - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399201 chr10:23399200 nonsynonymous SNV 0.800 1 20 hm7G_associated_SNPs_25201 0 0 1 0 2 MSRB2 chr10:23399247 5'GT 23399247 Upstream 48bp 23054 chr16 129683 129683 1 + G A COAD 129684 + 129664 129704 41 CCGGCAGTCCCCCTGGCCCGGGCATTTCTGGGACAGGTAAT CCGGCAGTCCCCCTGGCCCAGGCATTTCTGGGACAGGTAAT < 41bp 0.527054527836274 0.748561062708899 NA NA prediction 0.443013069745248 Functional Gain - MPG ENSG00000103152 CDS Human protein_coding chr16:129684 chr16:129683 nonsynonymous SNV 0.715 0 20 hm7G_associated_SNPs_25203 0 0 1 0 1 MPG chr16:129699 5'GT 129699 Upstream 17bp 23055 chr19 5685010 5685010 1 + G A SKCM 5685011 + 5684991 5685031 41 TATGGCCAGCCAGCCTCCAGGGAGCGCGAGTGCTGCTGACA TATGGCCAGCCAGCCTCCAAGGAGCGCGAGTGCTGCTGACA < 41bp 0.51960886929273 0.741095649432247 NA NA prediction 0.442973560279034 Functional Gain - HSD11B1L ENSG00000167733 CDS Human other chr19:5685011 chr19:5685010 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_25206 0 0 0 0 2 HSD11B1L chr19:5684976 3'AG 5684976 Downstream 35bp 23056 chr19 5685010 5685010 1 + G A SKCM 5685011 + 5684991 5685031 41 TATGGCCAGCCAGCCTCCAGGGAGCGCGAGTGCTGCTGACA TATGGCCAGCCAGCCTCCAAGGAGCGCGAGTGCTGCTGACA < 41bp 0.51960886929273 0.741095649432247 NA NA prediction 0.442973560279034 Functional Gain - HSD11B1L ENSG00000167733 CDS Human protein_coding chr19:5685011 chr19:5685010 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_25206 0 0 0 0 2 HSD11B1L chr19:5685000 3'AG 5685000 Downstream 11bp 23057 chr15 45453967 45453967 1 + G A KIRC 45453968 + 45453948 45453988 41 TGCGGTTCCAGCGGCCCCAGGGCTTTGAGTACAAGTCAGGG TGCGGTTCCAGCGGCCCCAAGGCTTTGAGTACAAGTCAGGG < 41bp 0.497803001632224 0.721480948621975 NA NA prediction 0.442961897243951 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45453968 chr15:45453967 synonymous SNV . 0 20 hm7G_associated_SNPs_25207 0 0 0 0 1 DUOX1 chr15:45453936 3'AG 45453936 Downstream 32bp 23058 chr9 70993232 70993232 1 + G T UCEC 70993233 + 70993213 70993253 41 AGCCAGCCACTGCCCTGGAGGACCAGGGGGAGAGTTTGGAG AGCCAGCCACTGCCCTGGATGACCAGGGGGAGAGTTTGGAG < 41bp 0.677002121449872 0.898471991613689 NA NA prediction 0.442939740327636 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:70993233 chr9:70993232 stopgain 1.000 0 20 hm7G_associated_SNPs_25212 0 0 0 0 1 PGM5 chr9:70993277 5'GT 70993277 Upstream 46bp 23059 chr16 30974857 30974857 1 + G A rs141357385 30974858 + 30974838 30974878 41 GTGAGAAGTTCCAAGGCTCGGGTGCAGCCACTGAGACGGTG GTGAGAAGTTCCAAGGCTCAGGTGCAGCCACTGAGACGGTG < 41bp 0.504396222443067 0.725863034881645 NA NA prediction 0.442933624877157 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30974858 chr16:30974857 synonymous SNV . 0 20 hm7G_associated_SNPs_25213 0 0 1 0 1 SETD1A chr16:30974875 5'GT 30974875 Upstream 19bp 23060 chr17 8170947 8170947 1 + G A LIHC 8170948 + 8170928 8170968 41 TGGCGTGGCCTTCGTGGGCGGCTTCAGCTATGCAGATGTCC TGGCGTGGCCTTCGTGGGCAGCTTCAGCTATGCAGATGTCC < 41bp 0.500518486232658 0.72198043988677 NA NA prediction 0.442923907308224 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170948 chr17:8170947 nonsynonymous SNV 0.907 3 20 hm7G_associated_SNPs_25214 0 0 1 0 2 PFAS chr17:8170869 3'AG 8170869 Downstream 79bp 23061 chr17 8170947 8170947 1 + G A LIHC 8170948 + 8170928 8170968 41 TGGCGTGGCCTTCGTGGGCGGCTTCAGCTATGCAGATGTCC TGGCGTGGCCTTCGTGGGCAGCTTCAGCTATGCAGATGTCC < 41bp 0.500518486232658 0.72198043988677 NA NA prediction 0.442923907308224 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8170948 chr17:8170947 nonsynonymous SNV 0.907 3 20 hm7G_associated_SNPs_25214 0 0 1 0 2 PFAS chr17:8170983 5'GT 8170983 Upstream 37bp 23062 chr7 151071203 151071203 1 + G T UCEC 151071204 + 151071184 151071224 41 AACTGGCCCAAATAAGGAAGGAGGAAAAAGAGAAGAAAAGA AACTGGCCCAAATAAGGAATGAGGAAAAAGAGAAGAAAAGA < 41bp 0.65707455216405 0.878524756749934 NA NA prediction 0.442900409171769 Functional Gain - NUB1 ENSG00000013374 CDS Human protein_coding chr7:151071204 chr7:151071203 nonsynonymous SNV 0.881 1 20 hm7G_associated_SNPs_25216 0 0 0 0 2 NUB1 chr7:151071183 3'AG 151071183 Downstream 21bp 23063 chr7 151071203 151071203 1 + G T UCEC 151071204 + 151071184 151071224 41 AACTGGCCCAAATAAGGAAGGAGGAAAAAGAGAAGAAAAGA AACTGGCCCAAATAAGGAATGAGGAAAAAGAGAAGAAAAGA < 41bp 0.65707455216405 0.878524756749934 NA NA prediction 0.442900409171769 Functional Gain - NUB1 ENSG00000013374 CDS Human protein_coding chr7:151071204 chr7:151071203 nonsynonymous SNV 0.881 1 20 hm7G_associated_SNPs_25216 0 0 0 0 2 NUB1 chr7:151071287 5'GT 151071287 Upstream 85bp 23064 chr16 2512467 2512467 1 + G A UCEC 2512468 + 2512448 2512488 41 GGAGGTGGAGGCGGAGGCGGGGCGCCTGCGGAAGGCCTGCT GGAGGTGGAGGCGGAGGCGAGGCGCCTGCGGAAGGCCTGCT < 41bp 0.547360524409391 0.768804925261201 NA NA prediction 0.442888801703621 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2512468 chr16:2512467 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_25218 0 0 1 0 2 C16orf59 chr16:2512416 3'AG 2512416 Downstream 52bp 23065 chr16 2512467 2512467 1 + G A UCEC 2512468 + 2512448 2512488 41 GGAGGTGGAGGCGGAGGCGGGGCGCCTGCGGAAGGCCTGCT GGAGGTGGAGGCGGAGGCGAGGCGCCTGCGGAAGGCCTGCT < 41bp 0.547360524409391 0.768804925261201 NA NA prediction 0.442888801703621 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2512468 chr16:2512467 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_25218 0 0 1 0 2 C16orf59 chr16:2512527 5'GT 2512527 Upstream 61bp 23066 chr17 35830537 35830537 1 + G T THCA 35830538 + 35830518 35830558 41 GATCACCTCAAGAAGACACGGGAGGAAGAGCGCCTTAAACG GATCACCTCAAGAAGACACTGGAGGAAGAGCGCCTTAAACG < 41bp 0.674460137653171 0.895902631221647 NA NA prediction 0.442884987136952 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35830538 chr17:35830537 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_25219 0 0 0 0 2 TADA2A chr17:35830504 3'AG 35830504 Downstream 34bp 23067 chr17 35830537 35830537 1 + G T THCA 35830538 + 35830518 35830558 41 GATCACCTCAAGAAGACACGGGAGGAAGAGCGCCTTAAACG GATCACCTCAAGAAGACACTGGAGGAAGAGCGCCTTAAACG < 41bp 0.674460137653171 0.895902631221647 NA NA prediction 0.442884987136952 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35830538 chr17:35830537 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_25219 0 0 0 0 2 TADA2A chr17:35830636 5'GT 35830636 Upstream 100bp 23068 chr11 65619945 65619945 1 + G A rs560762046 65619946 + 65619926 65619966 41 TCTGATGCAGAAGCTGGAGGGCCGGGTGGCTTCCGATGAGG TCTGATGCAGAAGCTGGAGAGCCGGGTGGCTTCCGATGAGG < 41bp 0.523567516739328 0.744998786583962 NA NA prediction 0.442862539689267 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65619946 chr11:65619945 nonsynonymous SNV 0.912 1 20 hm7G_associated_SNPs_25220 0 0 1 0 2 SNX32 chr11:65619936 3'AG 65619936 Downstream 10bp 23069 chr11 65619945 65619945 1 + G A rs560762046 65619946 + 65619926 65619966 41 TCTGATGCAGAAGCTGGAGGGCCGGGTGGCTTCCGATGAGG TCTGATGCAGAAGCTGGAGAGCCGGGTGGCTTCCGATGAGG < 41bp 0.523567516739328 0.744998786583962 NA NA prediction 0.442862539689267 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65619946 chr11:65619945 nonsynonymous SNV 0.912 1 20 hm7G_associated_SNPs_25220 0 0 1 0 2 SNX32 chr11:65620022 5'GT 65620022 Upstream 78bp 23070 chr10 118351339 118351339 1 + G T LUAD 118351340 + 118351320 118351360 41 TGACACTGAGCCCTGGGGCGGGACAGCAATCAGGCCCCTGA TGACACTGAGCCCTGGGGCTGGACAGCAATCAGGCCCCTGA < 41bp 0.676348967251855 0.897780147615467 NA NA prediction 0.442862360727224 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118351340 chr10:118351339 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_25221 0 0 0 0 2 PNLIPRP1 chr10:118351283 3'AG 118351283 Downstream 57bp 23071 chr10 118351339 118351339 1 + G T LUAD 118351340 + 118351320 118351360 41 TGACACTGAGCCCTGGGGCGGGACAGCAATCAGGCCCCTGA TGACACTGAGCCCTGGGGCTGGACAGCAATCAGGCCCCTGA < 41bp 0.676348967251855 0.897780147615467 NA NA prediction 0.442862360727224 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118351340 chr10:118351339 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_25221 0 0 0 0 2 PNLIPRP1 chr10:118351437 5'GT 118351437 Upstream 99bp 23072 chr19 37100873 37100873 1 + G T SKCM 37100874 + 37100854 37100894 41 CTGTGGACTTCACCCAGGAGGAGTGGCAGCAACTAGACCCT CTGTGGACTTCACCCAGGATGAGTGGCAGCAACTAGACCCT < 41bp 0.397811386143223 0.721428643637548 NA NA prediction 0.442857287275097 Functional Gain - ZNF382 ENSG00000161298 CDS Human protein_coding chr19:37100874 chr19:37100873 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25222 0 0 1 0 3 ZNF382 chr19:37100804 3'AG 37100804 Downstream 70bp 23073 chr19 37100873 37100873 1 + G T SKCM 37100874 + 37100854 37100894 41 CTGTGGACTTCACCCAGGAGGAGTGGCAGCAACTAGACCCT CTGTGGACTTCACCCAGGATGAGTGGCAGCAACTAGACCCT < 41bp 0.397811386143223 0.721428643637548 NA NA prediction 0.442857287275097 Functional Gain - ZNF382 ENSG00000161298 CDS Human protein_coding chr19:37100874 chr19:37100873 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25222 0 0 1 0 3 ZNF382 chr19:37100829 3'AG 37100829 Downstream 45bp 23074 chr19 37100873 37100873 1 + G T SKCM 37100874 + 37100854 37100894 41 CTGTGGACTTCACCCAGGAGGAGTGGCAGCAACTAGACCCT CTGTGGACTTCACCCAGGATGAGTGGCAGCAACTAGACCCT < 41bp 0.397811386143223 0.721428643637548 NA NA prediction 0.442857287275097 Functional Gain - ZNF382 ENSG00000161298 CDS Human protein_coding chr19:37100874 chr19:37100873 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25222 0 0 1 0 3 ZNF382 chr19:37100955 5'GT 37100955 Upstream 83bp 23075 chr5 140348840 140348840 1 + G T UCEC 140348841 + 140348821 140348861 41 GCAGCAGTGACTGACAGCAGGAATCTCACAGGCCAAAGTGG GCAGCAGTGACTGACAGCATGAATCTCACAGGCCAAAGTGG < 41bp 0.401956928047013 0.721423458049484 NA NA prediction 0.442846916098968 Functional Gain - PCDHAC2 ENSG00000243232 CDS Human protein_coding chr5:140348841 chr5:140348840 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_25223 0 0 0 0 1 PCDHAC2 chr5:140348916 5'GT 140348916 Upstream 77bp 23076 chr9 117033025 117033025 1 + G T LUAD 117033026 + 117033006 117033046 41 AGGGAGAGCCAGGCCTTGAGGGTGACAGTGGCCCCATGGGA AGGGAGAGCCAGGCCTTGATGGTGACAGTGGCCCCATGGGA < 41bp 0.374337879158386 0.721418280012158 NA NA prediction 0.442836560024316 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117033026 chr9:117033025 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_25224 0 0 1 0 2 COL27A1 chr9:117033008 3'AG 117033008 Downstream 18bp 23077 chr9 117033025 117033025 1 + G T LUAD 117033026 + 117033006 117033046 41 AGGGAGAGCCAGGCCTTGAGGGTGACAGTGGCCCCATGGGA AGGGAGAGCCAGGCCTTGATGGTGACAGTGGCCCCATGGGA < 41bp 0.374337879158386 0.721418280012158 NA NA prediction 0.442836560024316 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117033026 chr9:117033025 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_25224 0 0 1 0 2 COL27A1 chr9:117033061 5'GT 117033061 Upstream 37bp 23078 chr3 122849376 122849376 1 + G T LUAD 122849377 + 122849357 122849397 41 GACTCCCTGGGCAGATGAGGGCGGCTCCGTTTATCACCTGA GACTCCCTGGGCAGATGAGTGCGGCTCCGTTTATCACCTGA < 41bp 0.373815509386231 0.721401665022551 NA NA prediction 0.442803330045102 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122849377 chr3:122849376 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25225 0 0 1 0 2 PDIA5 chr3:122849327 3'AG 122849327 Downstream 50bp 23079 chr3 122849376 122849376 1 + G T LUAD 122849377 + 122849357 122849397 41 GACTCCCTGGGCAGATGAGGGCGGCTCCGTTTATCACCTGA GACTCCCTGGGCAGATGAGTGCGGCTCCGTTTATCACCTGA < 41bp 0.373815509386231 0.721401665022551 NA NA prediction 0.442803330045102 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122849377 chr3:122849376 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25225 0 0 1 0 2 PDIA5 chr3:122849463 5'GT 122849463 Upstream 88bp 23080 chr3 37560773 37560773 1 + G T UCEC 37560774 + 37560754 37560794 41 TGGCCATTGGTGCACCCAAGGAGGATGACTTCGCAGGGGCG TGGCCATTGGTGCACCCAATGAGGATGACTTCGCAGGGGCG < 41bp 0.38332026631017 0.721401657399276 NA NA prediction 0.442803314798552 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37560774 chr3:37560773 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_25226 0 0 0 0 2 ITGA9 chr3:37560751 3'AG 37560751 Downstream 23bp 23081 chr3 37560773 37560773 1 + G T UCEC 37560774 + 37560754 37560794 41 TGGCCATTGGTGCACCCAAGGAGGATGACTTCGCAGGGGCG TGGCCATTGGTGCACCCAATGAGGATGACTTCGCAGGGGCG < 41bp 0.38332026631017 0.721401657399276 NA NA prediction 0.442803314798552 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37560774 chr3:37560773 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_25226 0 0 0 0 2 ITGA9 chr3:37560845 5'GT 37560845 Upstream 73bp 23082 chr7 75889305 75889305 1 + G T HNSC 75889306 + 75889286 75889326 41 ACGATGACGACGGCCCAGTGGACTGTGACTGCCCGGCCTCC ACGATGACGACGGCCCAGTTGACTGTGACTGCCCGGCCTCC < 41bp 0.360063933684445 0.721377043382063 NA NA prediction 0.442754086764126 Functional Gain - SRRM3 ENSG00000177679 CDS Human protein_coding chr7:75889306 chr7:75889305 synonymous SNV . 0 20 hm7G_associated_SNPs_25229 0 0 0 0 1 SRRM3 chr7:75889352 5'GT 75889352 Upstream 48bp 23083 chr7 23731023 23731023 1 + G T TGCT 23731024 + 23731004 23731044 41 TTCAGGTTCCAAGTGTTCAGGATTCCATAGCTGCTTCACTT TTCAGGTTCCAAGTGTTCATGATTCCATAGCTGCTTCACTT < 41bp 0.397327668247293 0.721373998255755 NA NA prediction 0.44274799651151 Functional Gain - FAM221A ENSG00000188732 CDS Human protein_coding chr7:23731024 chr7:23731023 stopgain 0.994 1 20 hm7G_associated_SNPs_25230 0 0 0 0 1 FAM221A chr7:23731009 3'AG 23731009 Downstream 15bp 23084 chr1 151015491 151015491 1 + G T UCEC 151015492 + 151015472 151015512 41 AGCTGAAAGGCTGGGCCGAGGTTGTATGTGGGATGTGACTG AGCTGAAAGGCTGGGCCGATGTTGTATGTGGGATGTGACTG < 41bp 0.678217699614208 0.899589656767206 NA NA prediction 0.442743914305995 Functional Gain - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151015492 chr1:151015491 nonsynonymous SNV 0.707 2 20 hm7G_associated_SNPs_25231 0 0 0 0 1 BNIPL chr1:151015432 3'AG 151015432 Downstream 60bp 23085 chr1 230814715 230814715 1 + G T STAD 230814716 + 230814696 230814736 41 AACGGCAGTGTGGATCACAGGCTAGTGTAAAGAGATTAAGA AACGGCAGTGTGGATCACATGCTAGTGTAAAGAGATTAAGA < 41bp 0.674310368088765 0.895668796945055 NA NA prediction 0.442716857712581 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230814716 chr1:230814715 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_25233 0 0 1 0 2 COG2 chr1:230814659 3'AG 230814659 Downstream 57bp 23086 chr1 230814715 230814715 1 + G T STAD 230814716 + 230814696 230814736 41 AACGGCAGTGTGGATCACAGGCTAGTGTAAAGAGATTAAGA AACGGCAGTGTGGATCACATGCTAGTGTAAAGAGATTAAGA < 41bp 0.674310368088765 0.895668796945055 NA NA prediction 0.442716857712581 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230814716 chr1:230814715 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_25233 0 0 1 0 2 COG2 chr1:230814798 5'GT 230814798 Upstream 84bp 23087 chr3 172046816 172046816 1 + G T HNSC 172046817 + 172046797 172046837 41 AGTTGACAAAGCTTTGTCCGGCAATGGGGTACACATTCAGG AGTTGACAAAGCTTTGTCCTGCAATGGGGTACACATTCAGG < 41bp 0.380502656195951 0.721353772303296 NA NA prediction 0.442707544606593 Functional Gain - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172046817 chr3:172046816 synonymous SNV . 0 20 hm7G_associated_SNPs_25234 0 0 1 0 2 FNDC3B chr3:172046742 3'AG 172046742 Downstream 75bp 23088 chr3 172046816 172046816 1 + G T HNSC 172046817 + 172046797 172046837 41 AGTTGACAAAGCTTTGTCCGGCAATGGGGTACACATTCAGG AGTTGACAAAGCTTTGTCCTGCAATGGGGTACACATTCAGG < 41bp 0.380502656195951 0.721353772303296 NA NA prediction 0.442707544606593 Functional Gain - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172046817 chr3:172046816 synonymous SNV . 0 20 hm7G_associated_SNPs_25234 0 0 1 0 2 FNDC3B chr3:172046866 5'GT 172046866 Upstream 51bp 23089 chr1 39494463 39494463 1 + G T KIRC 39494464 + 39494444 39494484 41 ATGGTTGACAATCCAGAGTGGTGAACAGCCCTACAAGATGG ATGGTTGACAATCCAGAGTTGTGAACAGCCCTACAAGATGG < 41bp 0.666617053301113 0.887947774440564 NA NA prediction 0.442661442278903 Functional Gain - NDUFS5 ENSG00000168653 CDS Human protein_coding chr1:39494464 chr1:39494463 nonsynonymous SNV 0.234 1 20 hm7G_associated_SNPs_25237 0 0 1 0 1 NDUFS5 chr1:39494395 3'AG 39494395 Downstream 69bp 23090 chr19 36257741 36257741 1 + G A COAD 36257742 + 36257722 36257762 41 TCCTCCCAAGCACCCCTTCGGCCAGAGGATGACATTCTGTA TCCTCCCAAGCACCCCTTCAGCCAGAGGATGACATTCTGTA < 41bp 0.505199999958131 0.726526410539131 NA NA prediction 0.442652821162 Functional Gain - PROSER3 ENSG00000167595 CDS Human protein_coding chr19:36257742 chr19:36257741 nonsynonymous SNV 0.019 1 20 hm7G_associated_SNPs_25239 0 0 1 0 1 PROSER3 chr19:36257669 3'AG 36257669 Downstream 73bp 23091 chr15 45454098 45454098 1 + G T COAD 45454099 + 45454079 45454119 41 CTGCACATCCGGGCAGCAGGGCCCTGGACCACTCGCCTCAG CTGCACATCCGGGCAGCAGTGCCCTGGACCACTCGCCTCAG < 41bp 0.368807817693062 0.721325721130562 NA NA prediction 0.442651442261123 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45454099 chr15:45454098 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_25240 0 0 0 0 1 DUOX1 chr15:45454168 5'GT 45454168 Upstream 71bp 23092 chr1 156348058 156348058 1 + G T UCEC 156348059 + 156348039 156348079 41 CCAGGTGAGAGATGCCGGAGGCTCCATGACTATCCACACCT CCAGGTGAGAGATGCCGGATGCTCCATGACTATCCACACCT < 41bp 0.365566887873479 0.72132206670888 NA NA prediction 0.442644133417761 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156348059 chr1:156348058 nonsynonymous SNV 0.832 3 20 hm7G_associated_SNPs_25241 0 0 1 0 1 RHBG chr1:156348043 3'AG 156348043 Downstream 16bp 23093 chr1 206658635 206658635 1 + G T COAD 206658636 + 206658616 206658656 41 GCCGGGATCAGGTACATGAGGACAGAAGGTCTGTGGGATTT GCCGGGATCAGGTACATGATGACAGAAGGTCTGTGGGATTT < 41bp 0.677629798237339 0.898942304439482 NA NA prediction 0.442625012404284 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206658636 chr1:206658635 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25243 0 0 0 0 1 IKBKE chr1:206658643 5'GT 206658643 Upstream 9bp 23094 chr1 175097184 175097184 1 + G T LUSC 175097185 + 175097165 175097205 41 TAGGAGATGCAGCTGGGACGGGAAGACCAGAGGTTTGCGTT TAGGAGATGCAGCTGGGACTGGAAGACCAGAGGTTTGCGTT < 41bp 0.679571842755054 0.90088118136295 NA NA prediction 0.442618677215793 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175097185 chr1:175097184 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_25244 0 0 0 0 1 TNN chr1:175097168 3'AG 175097168 Downstream 17bp 23095 chr12 132636356 132636356 1 + G T CESC 132636357 + 132636337 132636377 41 CCTTGGAGAGCTCCCTGTGGGAGCTTCAGGTGAGGGCGCTG CCTTGGAGAGCTCCCTGTGTGAGCTTCAGGTGAGGGCGCTG < 41bp 0.67652879626268 0.89783520528551 NA NA prediction 0.44261281804566 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636357 chr12:132636356 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25245 0 0 1 0 1 NOC4L chr12:132636365 5'GT 132636365 Upstream 10bp 23096 chrX 48547125 48547125 1 + G A COAD 48547126 + 48547106 48547146 41 CTATTGTGGGGGGTAACAAGGGTCGTTCTGGTCCACTGCCC CTATTGTGGGGGGTAACAAAGGTCGTTCTGGTCCACTGCCC < 41bp 0.505522214984929 0.726827219807787 NA NA prediction 0.442610009645717 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48547126 chrX:48547125 synonymous SNV . 0 20 hm7G_associated_SNPs_25246 0 0 0 0 1 WAS chrX:48547049 3'AG 48547049 Downstream 77bp 23097 chr10 88419679 88419679 1 + G A SARC 88419680 + 88419660 88419700 41 AGACCTTCGGGGCCTGCAAGGGCAATGGCGAGTCCCTGTGG AGACCTTCGGGGCCTGCAAAGGCAATGGCGAGTCCCTGTGG < 41bp 0.527026355497979 0.748329990185101 NA NA prediction 0.442607269374244 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419680 chr10:88419679 synonymous SNV . 0 20 hm7G_associated_SNPs_25247 0 0 0 0 1 OPN4 chr10:88419652 3'AG 88419652 Downstream 28bp 23098 chr17 18166058 18166058 1 + G A UCEC 18166059 + 18166039 18166079 41 CAGAGTTCTCCCAGAAACGGGGGAAGCGGCGTAGCGACGAA CAGAGTTCTCCCAGAAACGAGGGAAGCGGCGTAGCGACGAA < 41bp 0.518227651829889 0.739531084857833 NA NA prediction 0.442606866055889 Functional Gain - MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18166059 chr17:18166058 synonymous SNV . 0 20 hm7G_associated_SNPs_25248 0 0 0 0 1 MIEF2 chr17:18166028 3'AG 18166028 Downstream 31bp 23099 chr9 117029830 117029830 1 + G T LUAD 117029831 + 117029811 117029851 41 GGCCTTCCTGGGGAAGCCGGGATGAAGGTGAGGTGGGATGA GGCCTTCCTGGGGAAGCCGTGATGAAGGTGAGGTGGGATGA < 41bp 0.67634896445636 0.897644745652042 NA NA prediction 0.442591562391363 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117029831 chr9:117029830 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_25249 0 0 1 0 2 COL27A1 chr9:117029784 3'AG 117029784 Downstream 47bp 23100 chr9 117029830 117029830 1 + G T LUAD 117029831 + 117029811 117029851 41 GGCCTTCCTGGGGAAGCCGGGATGAAGGTGAGGTGGGATGA GGCCTTCCTGGGGAAGCCGTGATGAAGGTGAGGTGGGATGA < 41bp 0.67634896445636 0.897644745652042 NA NA prediction 0.442591562391363 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117029831 chr9:117029830 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_25249 0 0 1 0 2 COL27A1 chr9:117029837 5'GT 117029837 Upstream 8bp 23101 chr6 131902503 131902503 1 + G T UCEC 131902504 + 131902484 131902524 41 CTGTATCTTTCCTCCTGAAGGAACTAAAAGGAAAGGTAAAA CTGTATCTTTCCTCCTGAATGAACTAAAAGGAAAGGTAAAA < 41bp 0.658908855060659 0.880203974154613 NA NA prediction 0.442590238187909 Functional Gain - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131902504 chr6:131902503 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_25250 0 0 0 0 1 ARG1 chr6:131902518 5'GT 131902518 Upstream 16bp 23102 chr10 131964859 131964859 1 + G T LUAD 131964860 + 131964840 131964880 41 CAGATGAAGAGGTTCGACAGGGACTCAAAGCCTATTCCAGT CAGATGAAGAGGTTCGACATGGACTCAAAGCCTATTCCAGT < 41bp 0.672453207588419 0.893719323832034 NA NA prediction 0.44253223248723 Functional Gain - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131964860 chr10:131964859 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_25252 0 0 1 5 2 GLRX3 chr10:131964771 3'AG 131964771 Downstream 89bp 23103 chr10 131964859 131964859 1 + G T LUAD 131964860 + 131964840 131964880 41 CAGATGAAGAGGTTCGACAGGGACTCAAAGCCTATTCCAGT CAGATGAAGAGGTTCGACATGGACTCAAAGCCTATTCCAGT < 41bp 0.672453207588419 0.893719323832034 NA NA prediction 0.44253223248723 Functional Gain - GLRX3 ENSG00000108010 CDS Human protein_coding chr10:131964860 chr10:131964859 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_25252 0 0 1 5 2 GLRX3 chr10:131964943 5'GT 131964943 Upstream 85bp 23104 chr19 50957588 50957588 1 + G A SKCM 50957589 + 50957569 50957609 41 GATTGGGCCATCCTTGTCTGGGAGCCACCAATGTACGATGG GATTGGGCCATCCTTGTCTAGGAGCCACCAATGTACGATGG < 41bp 0.502010528557473 0.723266618541926 NA NA prediction 0.442512179968906 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957589 chr19:50957588 stopgain 1.000 0 20 hm7G_associated_SNPs_25254 0 0 0 0 2 MYBPC2 chr19:50957522 3'AG 50957522 Downstream 67bp 23105 chr19 50957588 50957588 1 + G A SKCM 50957589 + 50957569 50957609 41 GATTGGGCCATCCTTGTCTGGGAGCCACCAATGTACGATGG GATTGGGCCATCCTTGTCTAGGAGCCACCAATGTACGATGG < 41bp 0.502010528557473 0.723266618541926 NA NA prediction 0.442512179968906 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957589 chr19:50957588 stopgain 1.000 0 20 hm7G_associated_SNPs_25254 0 0 0 0 2 MYBPC2 chr19:50957626 5'GT 50957626 Upstream 39bp 23106 chr15 40568171 40568171 1 + G T LUSC 40568172 + 40568152 40568192 41 CTGGAGCGGATGCTGGTGCGGGACCCCCAAGAGAGAGCCAC CTGGAGCGGATGCTGGTGCTGGACCCCCAAGAGAGAGCCAC < 41bp 0.676746590614975 0.897998426231299 NA NA prediction 0.442503671232647 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40568172 chr15:40568171 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_25255 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40568128 3'AG 40568128 Downstream 44bp 23107 chr1 3677913 3677913 1 + G T UCEC 3677914 + 3677894 3677934 41 AGATCCTGCTGCTCCAGGAGGAGAGGGAGGCCCTGAAGATG AGATCCTGCTGCTCCAGGATGAGAGGGAGGCCCTGAAGATG < 41bp 0.674564567601135 0.895807542788382 NA NA prediction 0.442485950374495 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3677914 chr1:3677913 nonsynonymous SNV 0.228 2 20 hm7G_associated_SNPs_25257 0 0 0 0 1 CCDC27 chr1:3677845 3'AG 3677845 Downstream 69bp 23108 chr19 45848970 45848970 1 + G A rs187762935 45848971 + 45848951 45848991 41 CCCTGGCGGGACAGGGCCCGGCAGCCGGCTTGGAGATGCTG CCCTGGCGGGACAGGGCCCAGCAGCCGGCTTGGAGATGCTG < 41bp 0.546957617821779 0.768194368591763 NA NA prediction 0.442473501539968 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45848971 chr19:45848970 synonymous SNV . 0 20 hm7G_associated_SNPs_25258 0 0 0 0 1 KLC3 chr19:45849057 5'GT 45849057 Upstream 88bp 23109 chrX 69420252 69420252 1 + G T COAD 69420253 + 69420233 69420273 41 ATCCATCACTCCCTTTGTAGGGACCTTAGAAAGGATATTTT ATCCATCACTCCCTTTGTATGGACCTTAGAAAGGATATTTT < 41bp 0.669401879527048 0.890630128221093 NA NA prediction 0.44245649738809 Functional Gain - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69420253 chrX:69420252 nonsynonymous SNV 0.879 3 20 hm7G_associated_SNPs_25259 0 0 0 0 1 DGAT2L6 chrX:69420309 5'GT 69420309 Upstream 58bp 23110 chr20 31673910 31673910 1 + G A UCEC 31673911 + 31673891 31673931 41 GACCGCACGGGTTATCCTCGGCTGGTCATTGAGCGATGTGA GACCGCACGGGTTATCCTCAGCTGGTCATTGAGCGATGTGA < 41bp 0.500811031062292 0.722037827037893 NA NA prediction 0.442453591951203 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31673911 chr20:31673910 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_25260 0 0 0 0 1 BPIFB4 chr20:31673827 3'AG 31673827 Downstream 84bp 23111 chr6 160828077 160828077 1 + G T LUSC 160828078 + 160828058 160828098 41 GTCTTTCTCAAAAAGGTATGGCAGGATCGTCATTTACTTGC GTCTTTCTCAAAAAGGTATTGCAGGATCGTCATTTACTTGC < 41bp 0.391504257026773 0.721221936251497 NA NA prediction 0.442443872502993 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160828078 chr6:160828077 nonsynonymous SNV 0.816 4 20 hm7G_associated_SNPs_25261 0 0 0 0 1 SLC22A3 chr6:160828073 3'AG 160828073 Downstream 5bp 23112 chr16 66413286 66413286 1 + G A PRAD 66413287 + 66413267 66413307 41 CACATCGGGCGCCTGCCTGGGCCTGCTGGCAGTGGCAGCAG CACATCGGGCGCCTGCCTGAGCCTGCTGGCAGTGGCAGCAG < 41bp 0.489002967247188 0.72121729677009 NA NA prediction 0.442434593540181 Functional Gain - CDH5 ENSG00000179776 CDS Human protein_coding chr16:66413287 chr16:66413286 nonsynonymous SNV 0.908 1 20 hm7G_associated_SNPs_25263 0 0 0 0 1 CDH5 chr16:66413222 3'AG 66413222 Downstream 65bp 23113 chr1 21889671 21889671 1 + G T HNSC 21889672 + 21889652 21889692 41 CCTACCTGTGTGGGGTGAAGGCCAATGAGGGCACCGTGGGG CCTACCTGTGTGGGGTGAATGCCAATGAGGGCACCGTGGGG < 41bp 0.681504766760256 0.902721322317984 NA NA prediction 0.442433111115456 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889672 chr1:21889671 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_25264 0 0 0 0 1 ALPL chr1:21889603 3'AG 21889603 Downstream 69bp 23114 chr22 23235978 23235978 1 + G T COAD 23235979 + 23235959 23235999 41 TGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAGG TGTTATGTCTTCGGAACTGTGACCAAGGTCACCGTCCTAGG < 41bp 0.390371324297898 0.721215387345543 NA NA prediction 0.442430774691087 Functional Gain - IGLL5 ENSG00000211674;ENSG00000254709 CDS Human other chr22:23235979 chr22:23235978 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_25265 0 0 0 0 2 IGLL5 chr22:23235880 3'AG 23235880 Downstream 99bp 23115 chr22 23235978 23235978 1 + G T COAD 23235979 + 23235959 23235999 41 TGTTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAGG TGTTATGTCTTCGGAACTGTGACCAAGGTCACCGTCCTAGG < 41bp 0.390371324297898 0.721215387345543 NA NA prediction 0.442430774691087 Functional Gain - IGLL5 ENSG00000211674;ENSG00000254709 CDS Human other chr22:23235979 chr22:23235978 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_25265 0 0 0 0 2 IGLL5 chr22:23235998 5'GT 23235998 Upstream 21bp 23116 chr11 831585 831585 1 + G T THCA 831586 + 831566 831606 41 GACGCCTGCGAGGCCAGGCGGGCGGGCAGCAGCTGCAGGAA GACGCCTGCGAGGCCAGGCTGGCGGGCAGCAGCTGCAGGAA < 41bp 0.670001326925296 0.891208763115887 NA NA prediction 0.442414872381182 Functional Gain - CRACR2B ENSG00000177685 CDS Human protein_coding chr11:831586 chr11:831585 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_25267 0 0 1 0 1 CRACR2B chr11:831535 3'AG 831535 Downstream 51bp 23117 chr19 4216318 4216318 1 + G A rs45510899 4216319 + 4216299 4216339 41 CCAGACAACTCAGTCCGTCGGCCCAGGAACACCTGGCCTCG CCAGACAACTCAGTCCGTCAGCCCAGGAACACCTGGCCTCG < 41bp 0.501286871152018 0.722494146211278 NA NA prediction 0.44241455011852 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4216319 chr19:4216318 synonymous SNV . 0 20 hm7G_associated_SNPs_25268 0 0 0 0 2 ANKRD24 chr19:4216281 3'AG 4216281 Downstream 38bp 23118 chr19 4216318 4216318 1 + G A rs45510899 4216319 + 4216299 4216339 41 CCAGACAACTCAGTCCGTCGGCCCAGGAACACCTGGCCTCG CCAGACAACTCAGTCCGTCAGCCCAGGAACACCTGGCCTCG < 41bp 0.501286871152018 0.722494146211278 NA NA prediction 0.44241455011852 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4216319 chr19:4216318 synonymous SNV . 0 20 hm7G_associated_SNPs_25268 0 0 0 0 2 ANKRD24 chr19:4216399 5'GT 4216399 Upstream 82bp 23119 chr8 144644930 144644930 1 + G A LUSC 144644931 + 144644911 144644951 41 GCTGGGGCGAAGGAGCACCGGCCTGGGTCTTGCTGGACGAG GCTGGGGCGAAGGAGCACCAGCCTGGGTCTTGCTGGACGAG < 41bp 0.510403436716066 0.731601596485912 NA NA prediction 0.442396319539692 Functional Gain - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144644931 chr8:144644930 synonymous SNV . 0 20 hm7G_associated_SNPs_25270 0 0 1 0 1 GSDMD chr8:144644832 3'AG 144644832 Downstream 99bp 23120 chr2 95954325 95954325 1 + G T BLCA 95954326 + 95954306 95954346 41 AAATACTTCCGTCCTATCCGGAAACGCCTCAGGTGAGGGGC AAATACTTCCGTCCTATCCTGAAACGCCTCAGGTGAGGGGC < 41bp 0.678351685465595 0.899543839807219 NA NA prediction 0.442384308683248 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95954326 chr2:95954325 nonsynonymous SNV 0.958 1 20 hm7G_associated_SNPs_25272 0 0 0 0 2 PROM2 chr2:95954231 3'AG 95954231 Downstream 95bp 23121 chr2 95954325 95954325 1 + G T BLCA 95954326 + 95954306 95954346 41 AAATACTTCCGTCCTATCCGGAAACGCCTCAGGTGAGGGGC AAATACTTCCGTCCTATCCTGAAACGCCTCAGGTGAGGGGC < 41bp 0.678351685465595 0.899543839807219 NA NA prediction 0.442384308683248 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95954326 chr2:95954325 nonsynonymous SNV 0.958 1 20 hm7G_associated_SNPs_25272 0 0 0 0 2 PROM2 chr2:95954337 5'GT 95954337 Upstream 13bp 23122 chr1 34666433 34666433 1 + G T HNSC 34666434 + 34666414 34666454 41 AGCCTCTTTCTCAGCCAGTGGCCCCAGAGCCAGAAGGACGC AGCCTCTTTCTCAGCCAGTTGCCCCAGAGCCAGAAGGACGC < 41bp 0.687002967204358 0.908178270598558 NA NA prediction 0.442350606788401 Functional Gain - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34666434 chr1:34666433 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_25274 0 0 0 0 1 C1orf94 chr1:34666373 3'AG 34666373 Downstream 61bp 23123 chr12 58010182 58010182 1 + G A SKCM 58010183 + 58010163 58010203 41 AGCTTGGAGATCAGGCCCAGGGCAGCACACACACACCCATC AGCTTGGAGATCAGGCCCAAGGCAGCACACACACACCCATC < 41bp 0.505348796407705 0.726522684233882 NA NA prediction 0.442347775652354 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58010183 chr12:58010182 synonymous SNV . 0 20 hm7G_associated_SNPs_25275 0 0 1 0 1 ARHGEF25 chr12:58010278 5'GT 58010278 Upstream 97bp 23124 chr12 121013442 121013442 1 + G T STAD 121013443 + 121013423 121013463 41 CACTTTGGCAGATGCTGAGGGTTGGAAAAGCAAAAGCAGAT CACTTTGGCAGATGCTGAGTGTTGGAAAAGCAAAAGCAGAT < 41bp 0.667116638395532 0.888281530491049 NA NA prediction 0.442329784191034 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121013443 chr12:121013442 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25276 0 0 1 0 2 RNF10 chr12:121013434 3'AG 121013434 Downstream 9bp 23125 chr12 121013442 121013442 1 + G T STAD 121013443 + 121013423 121013463 41 CACTTTGGCAGATGCTGAGGGTTGGAAAAGCAAAAGCAGAT CACTTTGGCAGATGCTGAGTGTTGGAAAAGCAAAAGCAGAT < 41bp 0.667116638395532 0.888281530491049 NA NA prediction 0.442329784191034 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121013443 chr12:121013442 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25276 0 0 1 0 2 RNF10 chr12:121013491 5'GT 121013491 Upstream 50bp 23126 chr19 22783000 22783000 1 + G T UCEC 22783001 + 22782981 22783021 41 GCCCTGGCACCCCCAGCAAGGCCCTCCGAGGTGGAGCAGCA GCCCTGGCACCCCCAGCAATGCCCTCCGAGGTGGAGCAGCA < 41bp 0.665730631971953 0.886879065988515 NA NA prediction 0.442296868033124 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22783001 chr19:22783000 . . 0 20 hm7G_associated_SNPs_25280 0 0 0 0 2 GOLGA2P9 chr19:22782970 3'AG 22782970 Downstream 31bp 23127 chr19 22783000 22783000 1 + G T UCEC 22783001 + 22782981 22783021 41 GCCCTGGCACCCCCAGCAAGGCCCTCCGAGGTGGAGCAGCA GCCCTGGCACCCCCAGCAATGCCCTCCGAGGTGGAGCAGCA < 41bp 0.665730631971953 0.886879065988515 NA NA prediction 0.442296868033124 Functional Gain - GOLGA2P9 ENSG00000269332 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:22783001 chr19:22783000 . . 0 20 hm7G_associated_SNPs_25280 0 0 0 0 2 GOLGA2P9 chr19:22783088 5'GT 22783088 Upstream 89bp 23128 chr17 2265508 2265508 1 + G T LGG 2265509 + 2265489 2265529 41 AACACGTATGGGTACGCACGGCGCTCATCGAGAAAGTTCTG AACACGTATGGGTACGCACTGCGCTCATCGAGAAAGTTCTG < 41bp 0.371496769308036 0.721128059627886 NA NA prediction 0.442256119255771 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2265509 chr17:2265508 synonymous SNV . 0 20 hm7G_associated_SNPs_25283 0 0 0 0 1 SGSM2 chr17:2265564 5'GT 2265564 Upstream 57bp 23129 chr22 30769727 30769727 1 + G A rs139169688 30769728 + 30769708 30769748 41 GCAGAGCGAGCGGGAGCAGGGGCAATGCCAGCTCAGGGCCC GCAGAGCGAGCGGGAGCAGAGGCAATGCCAGCTCAGGGCCC < 41bp 0.528179166252521 0.749293313540689 NA NA prediction 0.442228294576337 Functional Gain - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30769728 chr22:30769727 nonsynonymous SNV 0.726 0 20 hm7G_associated_SNPs_25286 0 0 0 0 1 CCDC157 chr22:30769753 5'GT 30769753 Upstream 27bp 23130 chr17 4433952 4433952 1 + G T LIHC 4433953 + 4433933 4433973 41 TGGCTGCTGGTCCTGTCCCGGGGGCTGGTGGGCATCGGGGA TGGCTGCTGGTCCTGTCCCTGGGGCTGGTGGGCATCGGGGA < 41bp 0.685093182790847 0.906201546937519 NA NA prediction 0.442216728293345 Functional Gain - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4433953 chr17:4433952 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_25287 0 0 0 0 1 SPNS2 chr17:4433927 3'AG 4433927 Downstream 26bp 23131 chr6 97578671 97578671 1 + G T THYM 97578672 + 97578652 97578692 41 GCCCCATGCTGCAGAGAAGGGTCTACCATTCCATGGCTGCT GCCCCATGCTGCAGAGAAGTGTCTACCATTCCATGGCTGCT < 41bp 0.397043908713212 0.721097375601758 NA NA prediction 0.442194751203515 Functional Gain - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97578672 chr6:97578671 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25289 0 0 0 1 1 KLHL32 chr6:97578633 3'AG 97578633 Downstream 39bp 23132 chr16 30998265 30998265 1 + G A UCEC 30998266 + 30998246 30998286 41 ACCGCCAGGGCCTGCGCCTGGGAGGTTGGCTCTTCCGGGCC ACCGCCAGGGCCTGCGCCTAGGAGGTTGGCTCTTCCGGGCC < 41bp 0.532261119391366 0.753356138763045 NA NA prediction 0.442190038743359 Functional Gain - HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30998266 chr16:30998265 synonymous SNV . 0 20 hm7G_associated_SNPs_25290 0 0 0 0 1 HSD3B7 chr16:30998323 5'GT 30998323 Upstream 59bp 23133 chr5 139889704 139889704 1 + G T LUAD 139889705 + 139889685 139889725 41 GCAGTTGCTAGTGCAAGCAGGTGCTGATGTGGATGCAGCAG GCAGTTGCTAGTGCAAGCATGTGCTGATGTGGATGCAGCAG < 41bp 0.38676391991307 0.721094912968592 NA NA prediction 0.442189825937184 Functional Gain - ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139889705 chr5:139889704 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25291 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139889766 5'GT 139889766 Upstream 63bp 23134 chr9 135458563 135458563 1 + G A HNSC 135458564 + 135458544 135458584 41 GGCAGCCCCTGAGCCTGGGGGCCGCCTTGCGGCCAAGGCCG GGCAGCCCCTGAGCCTGGGAGCCGCCTTGCGGCCAAGGCCG < 41bp 0.522420431346662 0.743513095247677 NA NA prediction 0.44218532780203 Functional Gain - BARHL1 ENSG00000125492 CDS Human protein_coding chr9:135458564 chr9:135458563 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_25292 0 0 0 0 1 BARHL1 chr9:135458650 5'GT 135458650 Upstream 88bp 23135 chr1 36028872 36028872 1 + G T PRAD 36028873 + 36028853 36028893 41 AGATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTGTGCAAG AGATCCTGATCAAGGAAGGTGCCCCCTCGCTTCTGTGCAAG < 41bp 0.364622902822804 0.721087144341772 NA NA prediction 0.442174288683544 Functional Gain - NCDN ENSG00000020129 CDS Human protein_coding chr1:36028873 chr1:36028872 synonymous SNV . 0 20 hm7G_associated_SNPs_25293 0 0 1 0 1 NCDN chr1:36028803 3'AG 36028803 Downstream 70bp 23136 chr15 91419555 91419555 1 + G T LUAD 91419556 + 91419536 91419576 41 CTGTCGCCTCACCGCCCGCGGCACAGCCGGCTGCAGAGGGA CTGTCGCCTCACCGCCCGCTGCACAGCCGGCTGCAGAGGGA < 41bp 0.687928565993344 0.908988988868224 NA NA prediction 0.442120845749761 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91419556 chr15:91419555 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25295 0 0 1 0 2 FURIN chr15:91419485 3'AG 91419485 Downstream 71bp 23137 chr15 91419555 91419555 1 + G T LUAD 91419556 + 91419536 91419576 41 CTGTCGCCTCACCGCCCGCGGCACAGCCGGCTGCAGAGGGA CTGTCGCCTCACCGCCCGCTGCACAGCCGGCTGCAGAGGGA < 41bp 0.687928565993344 0.908988988868224 NA NA prediction 0.442120845749761 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91419556 chr15:91419555 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25295 0 0 1 0 2 FURIN chr15:91419583 5'GT 91419583 Upstream 29bp 23138 chr3 52406256 52406256 1 + G T LGG 52406257 + 52406237 52406277 41 TGCCAGGTGCTGTGCATTGGGCCAACAGGCACGGGGAAGAC TGCCAGGTGCTGTGCATTGTGCCAACAGGCACGGGGAAGAC < 41bp 0.397472747841648 0.721037950655948 NA NA prediction 0.442075901311895 Functional Gain - DNAH1 ENSG00000114841 CDS Human protein_coding chr3:52406257 chr3:52406256 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_25297 0 0 0 0 1 DNAH1 chr3:52406243 3'AG 52406243 Downstream 14bp 23139 chr11 67803807 67803807 1 + G T UCEC 67803808 + 67803788 67803828 41 GACCAAGTGCATCTACTGCGGCTTCTGCCAGGAGGCCTGTC GACCAAGTGCATCTACTGCTGCTTCTGCCAGGAGGCCTGTC < 41bp 0.673272561766482 0.894294736489158 NA NA prediction 0.442044349445351 Functional Gain - NDUFS8 ENSG00000110717 CDS Human protein_coding chr11:67803808 chr11:67803807 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_25299 0 0 1 0 1 NDUFS8 chr11:67803720 3'AG 67803720 Downstream 88bp 23140 chr19 2416594 2416594 1 + G A SARC 2416595 + 2416575 2416615 41 GTCCCTCCTGGGCCTGGGCGGGAGCCCGGTGAAGATCGGGC GTCCCTCCTGGGCCTGGGCAGGAGCCCGGTGAAGATCGGGC < 41bp 0.536090344410077 0.757093773219765 NA NA prediction 0.442006857619376 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2416595 chr19:2416594 nonsynonymous SNV 0.075 4 20 hm7G_associated_SNPs_25301 0 0 0 0 1 TMPRSS9 chr19:2416536 3'AG 2416536 Downstream 59bp 23141 chr2 231250017 231250017 1 + G T LAML 231250018 + 231249998 231250038 41 AAAGACCTTTCCAAGATTAGGGGTAAGATAAAGTTGGTACC AAAGACCTTTCCAAGATTATGGGTAAGATAAAGTTGGTACC < 41bp 0.396803126274397 0.720997552824389 NA NA prediction 0.441995105648777 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231250018 chr2:231250017 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_25302 0 0 0 0 2 SP140L chr2:231249939 3'AG 231249939 Downstream 79bp 23142 chr2 231250017 231250017 1 + G T LAML 231250018 + 231249998 231250038 41 AAAGACCTTTCCAAGATTAGGGGTAAGATAAAGTTGGTACC AAAGACCTTTCCAAGATTATGGGTAAGATAAAGTTGGTACC < 41bp 0.396803126274397 0.720997552824389 NA NA prediction 0.441995105648777 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231250018 chr2:231250017 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_25302 0 0 0 0 2 SP140L chr2:231250019 5'GT 231250019 Upstream 3bp 23143 chrX 80532534 80532534 1 + G T HNSC 80532535 + 80532515 80532555 41 CCTAGAAGCCAACAAAATAGGATTTGAAGAAAAAGATATTG CCTAGAAGCCAACAAAATATGATTTGAAGAAAAAGATATTG < 41bp 0.659889219396542 0.880883623644825 NA NA prediction 0.441988808496566 Functional Gain - SH3BGRL ENSG00000131171 CDS Human protein_coding chrX:80532535 chrX:80532534 stopgain 1.000 1 20 hm7G_associated_SNPs_25304 0 0 1 0 1 SH3BGRL chrX:80532483 3'AG 80532483 Downstream 52bp 23144 chr11 66366682 66366682 1 + G A rs61731812 66366683 + 66366663 66366703 41 GGCTCTCCTGGAAGGCACGGGGCGGCAGGCGGTACTCAAGG GGCTCTCCTGGAAGGCACGAGGCGGCAGGCGGTACTCAAGG < 41bp 0.5073836664358 0.728366198314861 NA NA prediction 0.441965063758123 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66366683 chr11:66366682 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_25305 0 0 1 0 2 CCS chr11:66366587 3'AG 66366587 Downstream 96bp 23145 chr11 66366682 66366682 1 + G A rs61731812 66366683 + 66366663 66366703 41 GGCTCTCCTGGAAGGCACGGGGCGGCAGGCGGTACTCAAGG GGCTCTCCTGGAAGGCACGAGGCGGCAGGCGGTACTCAAGG < 41bp 0.5073836664358 0.728366198314861 NA NA prediction 0.441965063758123 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66366683 chr11:66366682 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_25305 0 0 1 0 2 CCS chr11:66366724 5'GT 66366724 Upstream 43bp 23146 chr16 31374395 31374395 1 + G A SKCM 31374396 + 31374376 31374416 41 GTGTGTCCCTTGCCCAGGGGGGTGAGTGGCTGATGGGCCTG GTGTGTCCCTTGCCCAGGGAGGTGAGTGGCTGATGGGCCTG < 41bp 0.513773405687831 0.734746550329743 NA NA prediction 0.441946289283823 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31374396 chr16:31374395 nonsynonymous SNV 0.869 1 20 hm7G_associated_SNPs_25306 0 0 0 0 1 ITGAX chr16:31374396 5'GT 31374396 Upstream 2bp 23147 chr1 156863617 156863617 1 + G T rs4661072 156863618 + 156863598 156863638 41 CAGGCCGCAGGGGAGACGGGGCCCCAAGGCAGGTGAGTGAC CAGGCCGCAGGGGAGACGGTGCCCCAAGGCAGGTGAGTGAC < 41bp 0.526719137604623 0.74769207727013 NA NA prediction 0.441945879331015 Functional Gain - PEAR1 ENSG00000187800 UTR5 Human protein_coding chr1:156863618 chr1:156863617 . . 0 20 hm7G_associated_SNPs_25307 0 0 0 0 1 PEAR1 chr1:156863629 5'GT 156863629 Upstream 13bp 23148 chr7 44735721 44735721 1 + G T KIRP 44735722 + 44735702 44735742 41 CACTGGCTGGACTCTCCCTGGCCTGGTGAGTGAAGAAACAG CACTGGCTGGACTCTCCCTTGCCTGGTGAGTGAAGAAACAG < 41bp 0.36365117828652 0.720971053146043 NA NA prediction 0.441942106292086 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44735722 chr7:44735721 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_25308 0 0 1 0 2 OGDH chr7:44735624 3'AG 44735624 Downstream 98bp 23149 chr7 44735721 44735721 1 + G T KIRP 44735722 + 44735702 44735742 41 CACTGGCTGGACTCTCCCTGGCCTGGTGAGTGAAGAAACAG CACTGGCTGGACTCTCCCTTGCCTGGTGAGTGAAGAAACAG < 41bp 0.36365117828652 0.720971053146043 NA NA prediction 0.441942106292086 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44735722 chr7:44735721 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_25308 0 0 1 0 2 OGDH chr7:44735726 5'GT 44735726 Upstream 6bp 23150 chr11 113215078 113215078 1 + G A COAD 113215079 + 113215059 113215099 41 TCCAAGGTCCTGGCCATCCGGCAGCAGAGCTTTGCCCTGCT TCCAAGGTCCTGGCCATCCAGCAGCAGAGCTTTGCCCTGCT < 41bp 0.503692856584762 0.724651817813492 NA NA prediction 0.441917922457459 Functional Gain - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113215079 chr11:113215078 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_25309 0 0 0 0 2 TTC12 chr11:113214994 3'AG 113214994 Downstream 85bp 23151 chr11 113215078 113215078 1 + G A COAD 113215079 + 113215059 113215099 41 TCCAAGGTCCTGGCCATCCGGCAGCAGAGCTTTGCCCTGCT TCCAAGGTCCTGGCCATCCAGCAGCAGAGCTTTGCCCTGCT < 41bp 0.503692856584762 0.724651817813492 NA NA prediction 0.441917922457459 Functional Gain - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113215079 chr11:113215078 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_25309 0 0 0 0 2 TTC12 chr11:113215162 5'GT 113215162 Upstream 85bp 23152 chr4 177046313 177046313 1 + G T UCEC 177046314 + 177046294 177046334 41 TTGAAGGGACAGATGAAGAGGATCCAGTTACGGCCTTGGAA TTGAAGGGACAGATGAAGATGATCCAGTTACGGCCTTGGAA < 41bp 0.39734038963741 0.720957979196265 NA NA prediction 0.441915958392529 Functional Gain - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177046314 chr4:177046313 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_25310 0 0 1 0 1 WDR17 chr4:177046255 3'AG 177046255 Downstream 59bp 23153 chr11 76891509 76891509 1 + G T SKCM 76891510 + 76891490 76891530 41 CCAAGAAGGCCAAGGAGGAGGCCGAGCGCAAGCATCAGGTG CCAAGAAGGCCAAGGAGGATGCCGAGCGCAAGCATCAGGTG < 41bp 0.380656341413876 0.720945060086761 NA NA prediction 0.441890120173521 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76891510 chr11:76891509 nonsynonymous SNV 0.968 3 20 hm7G_associated_SNPs_25312 0 0 1 0 2 MYO7A chr11:76891420 3'AG 76891420 Downstream 90bp 23154 chr11 76891509 76891509 1 + G T SKCM 76891510 + 76891490 76891530 41 CCAAGAAGGCCAAGGAGGAGGCCGAGCGCAAGCATCAGGTG CCAAGAAGGCCAAGGAGGATGCCGAGCGCAAGCATCAGGTG < 41bp 0.380656341413876 0.720945060086761 NA NA prediction 0.441890120173521 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76891510 chr11:76891509 nonsynonymous SNV 0.968 3 20 hm7G_associated_SNPs_25312 0 0 1 0 2 MYO7A chr11:76891527 5'GT 76891527 Upstream 19bp 23155 chrX 149887105 149887105 1 + G T LUSC 149887106 + 149887086 149887126 41 TTTTTTGCCAGGCTCTAAGGGATGGAAATAAGCTGGCACAG TTTTTTGCCAGGCTCTAAGTGATGGAAATAAGCTGGCACAG < 41bp 0.665710271533305 0.886636762955363 NA NA prediction 0.441852982844116 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149887106 chrX:149887105 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_25316 0 0 1 2 1 MTMR1 chrX:149887172 5'GT 149887172 Upstream 68bp 23156 chr7 44096357 44096357 1 + G T SKCM 44096358 + 44096338 44096378 41 GTGCTGCTCCTGCTGCAGGGGGCCCATGTGACCATCAACGC GTGCTGCTCCTGCTGCAGGTGGCCCATGTGACCATCAACGC < 41bp 0.375068408083124 0.720926146028938 NA NA prediction 0.441852292057877 Functional Gain - DBNL ENSG00000136279 CDS Human protein_coding chr7:44096358 chr7:44096357 nonsynonymous SNV 0.786 4 20 hm7G_associated_SNPs_25317 0 0 1 0 1 DBNL chr7:44096356 3'AG 44096356 Downstream 2bp 23157 chr1 40229443 40229443 1 - C T rs140254369 40229442 - 40229422 40229462 41 TGACGTCCACGGCTCCCACGGCCGGCAGGTCTGCCGTCGGC TGACGTCCACGGCTCCCACAGCCGGCAGGTCTGCCGTCGGC < 41bp 0.517841099269833 0.738764185032231 NA NA prediction 0.441846171524796 Functional Gain - BMP8B ENSG00000116985 CDS Human other chr1:40229442 chr1:40229443 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_25318 0 0 0 0 2 BMP8B;PPIE chr1:40229384 5'GT 40229384 Upstream 60bp 23158 chr1 40229443 40229443 1 - C T rs140254369 40229442 - 40229422 40229462 41 TGACGTCCACGGCTCCCACGGCCGGCAGGTCTGCCGTCGGC TGACGTCCACGGCTCCCACAGCCGGCAGGTCTGCCGTCGGC < 41bp 0.517841099269833 0.738764185032231 NA NA prediction 0.441846171524796 Functional Gain - BMP8B ENSG00000116985 CDS Human protein_coding chr1:40229442 chr1:40229443 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_25318 0 0 0 0 2 BMP8B chr1:40229463 3'AG 40229463 Downstream 21bp 23159 chr16 89257790 89257790 1 + G T LUAD 89257791 + 89257771 89257811 41 GCAAGTGGACGCAGCCACTGGCCGGATCCAGACCCAGCACG GCAAGTGGACGCAGCCACTTGCCGGATCCAGACCCAGCACG < 41bp 0.355713182414137 0.720921433661755 NA NA prediction 0.441842867323509 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89257791 chr16:89257790 nonsynonymous SNV 0.024 5 20 hm7G_associated_SNPs_25319 0 0 0 0 2 CDH15 chr16:89257738 3'AG 89257738 Downstream 53bp 23160 chr16 89257790 89257790 1 + G T LUAD 89257791 + 89257771 89257811 41 GCAAGTGGACGCAGCCACTGGCCGGATCCAGACCCAGCACG GCAAGTGGACGCAGCCACTTGCCGGATCCAGACCCAGCACG < 41bp 0.355713182414137 0.720921433661755 NA NA prediction 0.441842867323509 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89257791 chr16:89257790 nonsynonymous SNV 0.024 5 20 hm7G_associated_SNPs_25319 0 0 0 0 2 CDH15 chr16:89257880 5'GT 89257880 Upstream 91bp 23161 chr9 93650849 93650849 1 + G T UCEC 93650850 + 93650830 93650870 41 GAGAAAGGAGAGCGGATGGGGTGCCCTGCAGGGTGTCCAAG GAGAAAGGAGAGCGGATGGTGTGCCCTGCAGGGTGTCCAAG < 41bp 0.378174007647263 0.720903855745983 NA NA prediction 0.441807711491966 Functional Gain - SYK ENSG00000165025 CDS Human protein_coding chr9:93650850 chr9:93650849 nonsynonymous SNV 0.959 2 20 hm7G_associated_SNPs_25324 0 0 0 0 2 SYK chr9:93650797 3'AG 93650797 Downstream 53bp 23162 chr9 93650849 93650849 1 + G T UCEC 93650850 + 93650830 93650870 41 GAGAAAGGAGAGCGGATGGGGTGCCCTGCAGGGTGTCCAAG GAGAAAGGAGAGCGGATGGTGTGCCCTGCAGGGTGTCCAAG < 41bp 0.378174007647263 0.720903855745983 NA NA prediction 0.441807711491966 Functional Gain - SYK ENSG00000165025 CDS Human protein_coding chr9:93650850 chr9:93650849 nonsynonymous SNV 0.959 2 20 hm7G_associated_SNPs_25324 0 0 0 0 2 SYK chr9:93650909 5'GT 93650909 Upstream 61bp 23163 chr20 31827643 31827643 1 + G A rs551074214 31827644 + 31827624 31827664 41 CCCCCAGCTGCTGGAACTTGGCCTTGTGCAGAGCCCTGATG CCCCCAGCTGCTGGAACTTAGCCTTGTGCAGAGCCCTGATG < 41bp 0.531114521534454 0.752006844263614 NA NA prediction 0.441784645458321 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31827644 chr20:31827643 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_25325 0 0 0 0 2 BPIFA1 chr20:31827609 3'AG 31827609 Downstream 35bp 23164 chr20 31827643 31827643 1 + G A rs551074214 31827644 + 31827624 31827664 41 CCCCCAGCTGCTGGAACTTGGCCTTGTGCAGAGCCCTGATG CCCCCAGCTGCTGGAACTTAGCCTTGTGCAGAGCCCTGATG < 41bp 0.531114521534454 0.752006844263614 NA NA prediction 0.441784645458321 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31827644 chr20:31827643 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_25325 0 0 0 0 2 BPIFA1 chr20:31827716 5'GT 31827716 Upstream 74bp 23165 chrX 48458030 48458030 1 + G A OV 48458031 + 48458011 48458051 41 GGCAAGTCGGGCCATGGCCGGGGACACGTCACTGAGCGAGA GGCAAGTCGGGCCATGGCCAGGGACACGTCACTGAGCGAGA < 41bp 0.50668590265253 0.727576875701578 NA NA prediction 0.441781946098097 Functional Gain - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48458031 chrX:48458030 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_25326 0 0 1 0 2 WDR13 chrX:48457975 3'AG 48457975 Downstream 56bp 23166 chrX 48458030 48458030 1 + G A OV 48458031 + 48458011 48458051 41 GGCAAGTCGGGCCATGGCCGGGGACACGTCACTGAGCGAGA GGCAAGTCGGGCCATGGCCAGGGACACGTCACTGAGCGAGA < 41bp 0.50668590265253 0.727576875701578 NA NA prediction 0.441781946098097 Functional Gain - WDR13 ENSG00000101940 CDS Human protein_coding chrX:48458031 chrX:48458030 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_25326 0 0 1 0 2 WDR13 chrX:48458105 5'GT 48458105 Upstream 76bp 23167 chr10 99343382 99343382 1 + G T TGCT 99343383 + 99343363 99343403 41 CTCTGGCAGGCTGATACCCGGCACGCCCTGGAGCATCCTGA CTCTGGCAGGCTGATACCCTGCACGCCCTGGAGCATCCTGA < 41bp 0.681059591547754 0.901949123787619 NA NA prediction 0.44177906447973 Functional Gain - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99343383 chr10:99343382 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_25327 0 0 0 0 1 ANKRD2 chr10:99343333 3'AG 99343333 Downstream 50bp 23168 chr7 100189370 100189370 1 + G A LUSC 100189371 + 100189351 100189391 41 GGCCCCCTTGCTAGCCCACGGCTACCGCCGCTTCTTGCCCA GGCCCCCTTGCTAGCCCACAGCTACCGCCGCTTCTTGCCCA < 41bp 0.522904687444517 0.743791626678827 NA NA prediction 0.44177387846862 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100189371 chr7:100189370 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_25328 0 0 0 1 1 FBXO24 chr7:100189290 3'AG 100189290 Downstream 81bp 23169 chr17 48683288 48683288 1 + G T COAD 48683289 + 48683269 48683309 41 GGAAGTTTTTCGTGTGCCAGGGCGAGGATACCAGGAACATC GGAAGTTTTTCGTGTGCCATGGCGAGGATACCAGGAACATC < 41bp 0.412591517894548 0.720886131795204 NA NA prediction 0.441772263590407 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48683289 chr17:48683288 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_25329 0 0 0 0 2 CACNA1G chr17:48683259 3'AG 48683259 Downstream 30bp 23170 chr17 48683288 48683288 1 + G T COAD 48683289 + 48683269 48683309 41 GGAAGTTTTTCGTGTGCCAGGGCGAGGATACCAGGAACATC GGAAGTTTTTCGTGTGCCATGGCGAGGATACCAGGAACATC < 41bp 0.412591517894548 0.720886131795204 NA NA prediction 0.441772263590407 Functional Gain - CACNA1G ENSG00000006283 CDS Human protein_coding chr17:48683289 chr17:48683288 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_25329 0 0 0 0 2 CACNA1G chr17:48683384 5'GT 48683384 Upstream 97bp 23171 chr17 2268311 2268311 1 + G A rs2248821 2268312 + 2268292 2268332 41 GAGAATGGGCTGCTGCCTCGGGGACAGCTAGAGCCCCCGCT GAGAATGGGCTGCTGCCTCAGGGACAGCTAGAGCCCCCGCT < 41bp 0.497125185326337 0.72086297606307 NA NA prediction 0.44172595212614 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2268312 chr17:2268311 nonsynonymous SNV 0.985 0 20 hm7G_associated_SNPs_25331 0 0 1 0 1 SGSM2 chr17:2268351 5'GT 2268351 Upstream 41bp 23172 chr16 30941424 30941424 1 + G A OV 30941425 + 30941405 30941445 41 GCCTTTGGCCTCTGCAGAGGGCCCAGCGGTGCCGTCCCCGT GCCTTTGGCCTCTGCAGAGAGCCCAGCGGTGCCGTCCCCGT < 41bp 0.53898980760508 0.759847836747917 NA NA prediction 0.441716058285674 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30941425 chr16:30941424 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_25332 0 0 1 0 1 FBXL19 chr16:30941394 3'AG 30941394 Downstream 31bp 23173 chr11 107501187 107501187 1 + G T LUSC 107501188 + 107501168 107501208 41 TTTTACTGTAAATTTCTGTGGCGCTGCCTGAAATTTGTAAT TTTTACTGTAAATTTCTGTTGCGCTGCCTGAAATTTGTAAT < 41bp 0.387059408350278 0.720841196624392 NA NA prediction 0.441682393248785 Functional Gain - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107501188 chr11:107501187 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_25337 0 0 0 0 1 ELMOD1 chr11:107501143 3'AG 107501143 Downstream 45bp 23174 chr19 45316556 45316556 1 + G A SKCM 45316557 + 45316537 45316577 41 CCGGCCCCCAAGATCACGTGGTATCGCAACGGGCAGCGCCT CCGGCCCCCAAGATCACGTAGTATCGCAACGGGCAGCGCCT < 41bp 0.531179500132884 0.752014778822683 NA NA prediction 0.441670557379598 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45316557 chr19:45316556 stopgain 0.984 0 20 hm7G_associated_SNPs_25338 0 0 0 0 2 BCAM chr19:45316507 3'AG 45316507 Downstream 50bp 23175 chr19 45316556 45316556 1 + G A SKCM 45316557 + 45316537 45316577 41 CCGGCCCCCAAGATCACGTGGTATCGCAACGGGCAGCGCCT CCGGCCCCCAAGATCACGTAGTATCGCAACGGGCAGCGCCT < 41bp 0.531179500132884 0.752014778822683 NA NA prediction 0.441670557379598 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45316557 chr19:45316556 stopgain 0.984 0 20 hm7G_associated_SNPs_25338 0 0 0 0 2 BCAM chr19:45316603 5'GT 45316603 Upstream 48bp 23176 chr19 50957356 50957356 1 + G T SKCM 50957357 + 50957337 50957377 41 GTGATTGAGAGTGCGCAGCGGGAAGACGAGGGCCGCTACAC GTGATTGAGAGTGCGCAGCTGGAAGACGAGGGCCGCTACAC < 41bp 0.686972784095035 0.907804905513518 NA NA prediction 0.441664242836965 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957357 chr19:50957356 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_25339 0 0 0 0 2 MYBPC2 chr19:50957277 3'AG 50957277 Downstream 80bp 23177 chr19 50957356 50957356 1 + G T SKCM 50957357 + 50957337 50957377 41 GTGATTGAGAGTGCGCAGCGGGAAGACGAGGGCCGCTACAC GTGATTGAGAGTGCGCAGCTGGAAGACGAGGGCCGCTACAC < 41bp 0.686972784095035 0.907804905513518 NA NA prediction 0.441664242836965 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957357 chr19:50957356 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_25339 0 0 0 0 2 MYBPC2 chr19:50957436 5'GT 50957436 Upstream 81bp 23178 chr16 1306921 1306921 1 + G A THCA 1306922 + 1306902 1306942 41 TCTACATCATCCAGACCGGGGCGGACATCGCCCTGCTGGAG TCTACATCATCCAGACCGGAGCGGACATCGCCCTGCTGGAG < 41bp 0.505642487774414 0.726449542773768 NA NA prediction 0.441614109998707 Functional Gain - TPSD1 ENSG00000095917 CDS Human protein_coding chr16:1306922 chr16:1306921 synonymous SNV . 0 20 hm7G_associated_SNPs_25341 0 0 0 0 1 TPSD1 chr16:1306825 3'AG 1306825 Downstream 97bp 23179 chr15 40226489 40226489 1 + G T UCEC 40226490 + 40226470 40226510 41 ACGAGCTACAGGCCCTGGAGGCCATTTACGGCGCGGACTTC ACGAGCTACAGGCCCTGGATGCCATTTACGGCGCGGACTTC < 41bp 0.385161209666086 0.720798736505007 NA NA prediction 0.441597473010014 Functional Gain - EIF2AK4 ENSG00000128829 CDS Human protein_coding chr15:40226490 chr15:40226489 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_25342 0 0 1 0 1 EIF2AK4 chr15:40226540 5'GT 40226540 Upstream 52bp 23180 chr22 38028441 38028441 1 + G A rs202112368 38028442 + 38028422 38028462 41 TGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTT TGAAGCTGCAGCCACCCTCAGGCACGGAGCTGCCAGCTTTT < 41bp 0.504114560446613 0.724909986183612 NA NA prediction 0.441590851473998 Functional Gain - GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028442 chr22:38028441 synonymous SNV . 0 20 hm7G_associated_SNPs_25343 0 0 1 0 2 GGA1 chr22:38028412 3'AG 38028412 Downstream 30bp 23181 chr22 38028441 38028441 1 + G A rs202112368 38028442 + 38028422 38028462 41 TGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTT TGAAGCTGCAGCCACCCTCAGGCACGGAGCTGCCAGCTTTT < 41bp 0.504114560446613 0.724909986183612 NA NA prediction 0.441590851473998 Functional Gain - GGA1 ENSG00000100083 CDS Human protein_coding chr22:38028442 chr22:38028441 synonymous SNV . 0 20 hm7G_associated_SNPs_25343 0 0 1 0 2 GGA1 chr22:38028522 5'GT 38028522 Upstream 82bp 23182 chr16 31422400 31422400 1 + G T LUSC 31422401 + 31422381 31422421 41 AGGCTCTGCCCTCCAGATCGGCTCCTACTTCGGGGCCTCCC AGGCTCTGCCCTCCAGATCTGCTCCTACTTCGGGGCCTCCC < 41bp 0.682219203960003 0.902969967988869 NA NA prediction 0.441501528057732 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31422401 chr16:31422400 nonsynonymous SNV 0.484 3 20 hm7G_associated_SNPs_25348 0 0 0 0 1 ITGAD chr16:31422397 3'AG 31422397 Downstream 4bp 23183 chr17 26820669 26820669 1 + G T HNSC 26820670 + 26820650 26820690 41 GTCATCCAGACCGAGCACAGGCTGCTGGGCCCCATGACCTT GTCATCCAGACCGAGCACATGCTGCTGGGCCCCATGACCTT < 41bp 0.686447832047562 0.907196508588958 NA NA prediction 0.441497353082792 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26820670 chr17:26820669 nonsynonymous SNV 0.895 1 20 hm7G_associated_SNPs_25350 0 0 0 0 1 SLC13A2 chr17:26820589 3'AG 26820589 Downstream 81bp 23184 chr3 119445159 119445159 1 + G T STAD 119445160 + 119445140 119445180 41 ATGATGAATGAAATGGAGAGGAAGGAGTGGGCCTTCAGAGA ATGATGAATGAAATGGAGATGAAGGAGTGGGCCTTCAGAGA < 41bp 0.668020973585808 0.88875412771503 NA NA prediction 0.441466308258443 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119445160 chr3:119445159 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25352 0 0 0 0 1 MAATS1 chr3:119445195 5'GT 119445195 Upstream 37bp 23185 chr2 27282252 27282252 1 + G T UCEC 27282253 + 27282233 27282273 41 ACCCAAAAGGTCACCCACCGGGTGCTGGGCCCCGTCAGAGG ACCCAAAAGGTCACCCACCTGGTGCTGGGCCCCGTCAGAGG < 41bp 0.678119958937674 0.898833011160345 NA NA prediction 0.441426104445342 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27282253 chr2:27282252 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_25353 0 0 1 0 1 AGBL5 chr2:27282272 5'GT 27282272 Upstream 21bp 23186 chr16 10996625 10996625 1 + G T LUAD 10996626 + 10996606 10996646 41 CTGGCAAATCTCTGAGGCTGGAACAGGGGTCTCCAGTATAT CTGGCAAATCTCTGAGGCTTGAACAGGGGTCTCCAGTATAT < 41bp 0.367288267483052 0.720704915748508 NA NA prediction 0.441409831497016 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10996626 chr16:10996625 stopgain 0.153 1 20 hm7G_associated_SNPs_25355 0 0 0 0 1 CIITA chr16:10996658 5'GT 10996658 Upstream 34bp 23187 chr10 118360697 118360697 1 + G T LIHC 118360698 + 118360678 118360718 41 TCTTCTTGAACACAGGAGAGGCTAGCAATTTCGCTCGTAAG TCTTCTTGAACACAGGAGATGCTAGCAATTTCGCTCGTAAG < 41bp 0.669052559572554 0.889741751463572 NA NA prediction 0.441378383782034 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118360698 chr10:118360697 nonsynonymous SNV 0.397 1 20 hm7G_associated_SNPs_25359 0 0 0 0 1 PNLIPRP1 chr10:118360713 5'GT 118360713 Upstream 17bp 23188 chr3 50252883 50252883 1 + G A SKCM 50252884 + 50252864 50252904 41 CTGCTACTCAAGTCCTCAGGGGTCGTGGGTGAGCCTCACAC CTGCTACTCAAGTCCTCAGAGGTCGTGGGTGAGCCTCACAC < 41bp 0.501879718494323 0.722563534874764 NA NA prediction 0.441367632760882 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252884 chr3:50252883 . 0.992 2 20 hm7G_associated_SNPs_25360 0 0 1 0 2 SLC38A3 chr3:50252818 3'AG 50252818 Downstream 66bp 23189 chr3 50252883 50252883 1 + G A SKCM 50252884 + 50252864 50252904 41 CTGCTACTCAAGTCCTCAGGGGTCGTGGGTGAGCCTCACAC CTGCTACTCAAGTCCTCAGAGGTCGTGGGTGAGCCTCACAC < 41bp 0.501879718494323 0.722563534874764 NA NA prediction 0.441367632760882 Functional Gain - SLC38A3 ENSG00000188338 ncRNA_exonic Human protein_coding chr3:50252884 chr3:50252883 . 0.992 2 20 hm7G_associated_SNPs_25360 0 0 1 0 2 SLC38A3 chr3:50252891 5'GT 50252891 Upstream 9bp 23190 chr19 18233526 18233526 1 + G A UCEC 18233527 + 18233507 18233547 41 CGCGTCTCTCCCATCTTCCGGCTATGGAACCAACACACCCA CGCGTCTCTCCCATCTTCCAGCTATGGAACCAACACACCCA < 41bp 0.496807182530934 0.720672573521788 NA NA prediction 0.441345147043576 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18233527 chr19:18233526 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_25361 0 0 0 0 2 MAST3 chr19:18233483 3'AG 18233483 Downstream 44bp 23191 chr19 18233526 18233526 1 + G A UCEC 18233527 + 18233507 18233547 41 CGCGTCTCTCCCATCTTCCGGCTATGGAACCAACACACCCA CGCGTCTCTCCCATCTTCCAGCTATGGAACCAACACACCCA < 41bp 0.496807182530934 0.720672573521788 NA NA prediction 0.441345147043576 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18233527 chr19:18233526 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_25361 0 0 0 0 2 MAST3 chr19:18233561 5'GT 18233561 Upstream 36bp 23192 chr7 73521482 73521482 1 + G A LUAD 73521483 + 73521463 73521503 41 GCCGTCGGACCTCATCCACGGGGAGGTGCTGGGCAAGGGCT GCCGTCGGACCTCATCCACAGGGAGGTGCTGGGCAAGGGCT < 41bp 0.512869722331068 0.733538715627766 NA NA prediction 0.441337986593396 Functional Gain - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73521483 chr7:73521482 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_25362 0 0 0 0 2 LIMK1 chr7:73521401 3'AG 73521401 Downstream 82bp 23193 chr7 73521482 73521482 1 + G A LUAD 73521483 + 73521463 73521503 41 GCCGTCGGACCTCATCCACGGGGAGGTGCTGGGCAAGGGCT GCCGTCGGACCTCATCCACAGGGAGGTGCTGGGCAAGGGCT < 41bp 0.512869722331068 0.733538715627766 NA NA prediction 0.441337986593396 Functional Gain - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73521483 chr7:73521482 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_25362 0 0 0 0 2 LIMK1 chr7:73521523 5'GT 73521523 Upstream 42bp 23194 chr5 3599423 3599423 1 + G A STAD 3599424 + 3599404 3599444 41 GCCGGCTTATTACCCCTACGGCCAGTTCCAATACGGGGACC GCCGGCTTATTACCCCTACAGCCAGTTCCAATACGGGGACC < 41bp 0.493947157859391 0.720664745859013 NA NA prediction 0.441329491718027 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3599424 chr5:3599423 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_25363 0 0 0 0 1 IRX1 chr5:3599339 3'AG 3599339 Downstream 85bp 23195 chr10 5496479 5496479 1 + G T STAD 5496480 + 5496460 5496500 41 CTGATGTTCAGCTTCTGGAGGATGCTGTAAGTAGTCCCTTA CTGATGTTCAGCTTCTGGATGATGCTGTAAGTAGTCCCTTA < 41bp 0.663201673837147 0.883850251413894 NA NA prediction 0.441297155153493 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5496480 chr10:5496479 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_25365 0 0 1 0 1 NET1 chr10:5496485 5'GT 5496485 Upstream 7bp 23196 chr20 61458610 61458610 1 + G A LUAD 61458611 + 61458591 61458631 41 AGGGTGACCGAGGCGAGAGGGGCCCAGAAGGGTTCCGCGGC AGGGTGACCGAGGCGAGAGAGGCCCAGAAGGGTTCCGCGGC < 41bp 0.497719637677478 0.720647153107091 NA NA prediction 0.441294306214183 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61458611 chr20:61458610 synonymous SNV . 0 20 hm7G_associated_SNPs_25367 0 0 1 0 1 COL9A3 chr20:61458646 5'GT 61458646 Upstream 37bp 23197 chr4 77926924 77926924 1 + G T TGCT 77926925 + 77926905 77926945 41 TGTTGACACCGTGGGATTTGGAGACCAGATAAATAAAGATG TGTTGACACCGTGGGATTTTGAGACCAGATAAATAAAGATG < 41bp 0.384905541032864 0.72064699501811 NA NA prediction 0.441293990036219 Functional Gain - SEPT11 ENSG00000138758 CDS Human protein_coding chr4:77926925 chr4:77926924 stopgain 1.000 1 20 hm7G_associated_SNPs_25368 0 0 1 0 1 SEPT11 chr4:77926949 5'GT 77926949 Upstream 26bp 23198 chr2 74782359 74782359 1 + G A UCEC 74782360 + 74782340 74782380 41 CGAGTTCTTTGACCATAAGGGGTCGAGCTCTGGGGGTGGCC CGAGTTCTTTGACCATAAGAGGTCGAGCTCTGGGGGTGGCC < 41bp 0.493797421633174 0.720644203219511 NA NA prediction 0.441288406439023 Functional Gain - DOK1 ENSG00000115325 CDS Human protein_coding chr2:74782360 chr2:74782359 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_25369 0 0 0 0 1 DOK1;DOK1 chr2:74782281 3'AG 74782281 Downstream 79bp 23199 chr7 4796700 4796700 1 + G T COAD 4796701 + 4796681 4796721 41 CCAGGAGGAGCCTGGGAAGGGGTCCTTTTGGCGAATAGACC CCAGGAGGAGCCTGGGAAGTGGTCCTTTTGGCGAATAGACC < 41bp 0.362099189880684 0.720642872212947 NA NA prediction 0.441285744425893 Functional Gain - FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4796701 chr7:4796700 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_25371 0 0 1 0 1 FOXK1 chr7:4796625 3'AG 4796625 Downstream 76bp 23200 chr19 55805697 55805697 1 + G A UCEC 55805698 + 55805678 55805718 41 AACTGGCCTTCCCTTCCAGGGGGAAAAATATGATGGCCGCC AACTGGCCTTCCCTTCCAGAGGGAAAAATATGATGGCCGCC < 41bp 0.509738501810529 0.730380633609055 NA NA prediction 0.441284263597051 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55805698 chr19:55805697 nonsynonymous SNV 0.924 4 20 hm7G_associated_SNPs_25372 0 0 0 0 2 BRSK1 chr19:55805697 3'AG 55805697 Downstream 1bp 23201 chr19 55805697 55805697 1 + G A UCEC 55805698 + 55805678 55805718 41 AACTGGCCTTCCCTTCCAGGGGGAAAAATATGATGGCCGCC AACTGGCCTTCCCTTCCAGAGGGAAAAATATGATGGCCGCC < 41bp 0.509738501810529 0.730380633609055 NA NA prediction 0.441284263597051 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55805698 chr19:55805697 nonsynonymous SNV 0.924 4 20 hm7G_associated_SNPs_25372 0 0 0 0 2 BRSK1 chr19:55805765 5'GT 55805765 Upstream 69bp 23202 chr1 12066687 12066687 1 + G T LUSC 12066688 + 12066668 12066708 41 AGGAGTTCATGGTTTCCATGGTTACCGGCCTGGCCTCCTTG AGGAGTTCATGGTTTCCATTGTTACCGGCCTGGCCTCCTTG < 41bp 0.365840394218949 0.72063760582996 NA NA prediction 0.44127521165992 Functional Gain - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12066688 chr1:12066687 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_25374 0 0 1 0 2 MFN2 chr1:12066595 3'AG 12066595 Downstream 93bp 23203 chr1 12066687 12066687 1 + G T LUSC 12066688 + 12066668 12066708 41 AGGAGTTCATGGTTTCCATGGTTACCGGCCTGGCCTCCTTG AGGAGTTCATGGTTTCCATTGTTACCGGCCTGGCCTCCTTG < 41bp 0.365840394218949 0.72063760582996 NA NA prediction 0.44127521165992 Functional Gain - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12066688 chr1:12066687 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_25374 0 0 1 0 2 MFN2 chr1:12066750 5'GT 12066750 Upstream 64bp 23204 chr19 14041223 14041223 1 + G A rs62122100 14041224 + 14041204 14041244 41 GGTGAGGAGCCCATGGGGCGGGCAGCCCCCAGAAAGCGGGC GGTGAGGAGCCCATGGGGCAGGCAGCCCCCAGAAAGCGGGC < 41bp 0.499765192121018 0.720632257988886 NA NA prediction 0.441264515977771 Functional Gain - CC2D1A ENSG00000132024 UTR3 Human protein_coding chr19:14041224 chr19:14041223 . . 0 20 hm7G_associated_SNPs_25375 0 0 1 0 1 CC2D1A chr19:14041188 3'AG 14041188 Downstream 36bp 23205 chr6 52343958 52343958 1 + G T LUAD 52343959 + 52343939 52343979 41 CATTGGGGGCAAGTACCTTGGCAGGACTAAAGTTGTTAAAC CATTGGGGGCAAGTACCTTTGCAGGACTAAAGTTGTTAAAC < 41bp 0.374225103248349 0.720625375430977 NA NA prediction 0.441250750861955 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52343959 chr6:52343958 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_25376 0 0 1 0 1 EFHC1 chr6:52344048 5'GT 52344048 Upstream 91bp 23206 chr9 95846880 95846880 1 + G A LIHC 95846881 + 95846861 95846901 41 CAGCGTGGACAAGGACCCTGGGATCCCCAGAGCTCTAAGCC CAGCGTGGACAAGGACCCTAGGATCCCCAGAGCTCTAAGCC < 41bp 0.494666206915228 0.720617701062582 NA NA prediction 0.441235402125163 Functional Gain - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95846881 chr9:95846880 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_25378 0 0 0 0 1 SUSD3 chr9:95846819 3'AG 95846819 Downstream 62bp 23207 chr19 49633708 49633708 1 + G A GBM 49633709 + 49633689 49633729 41 CTGGAGGAGGCCCTGGAGCGGCAGCGCGCCGAGGTGTGCCA CTGGAGGAGGCCCTGGAGCAGCAGCGCGCCGAGGTGTGCCA < 41bp 0.506595081462014 0.727212038719035 NA NA prediction 0.441233914514042 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49633709 chr19:49633708 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_25379 0 0 1 0 1 PPFIA3 chr19:49633635 3'AG 49633635 Downstream 74bp 23208 chr17 6012997 6012997 1 + G A rs141696692 6012998 + 6012978 6013018 41 ACCCCCCGGTTCAACCTGCGGGATGCCATGGACAGCTCAGT ACCCCCCGGTTCAACCTGCAGGATGCCATGGACAGCTCAGT < 41bp 0.500825374156571 0.721438494149638 NA NA prediction 0.441226239986135 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012998 chr17:6012997 nonsynonymous SNV 0.826 0 20 hm7G_associated_SNPs_25380 0 0 1 0 2 WSCD1 chr17:6012927 3'AG 6012927 Downstream 71bp 23209 chr17 6012997 6012997 1 + G A rs141696692 6012998 + 6012978 6013018 41 ACCCCCCGGTTCAACCTGCGGGATGCCATGGACAGCTCAGT ACCCCCCGGTTCAACCTGCAGGATGCCATGGACAGCTCAGT < 41bp 0.500825374156571 0.721438494149638 NA NA prediction 0.441226239986135 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012998 chr17:6012997 nonsynonymous SNV 0.826 0 20 hm7G_associated_SNPs_25380 0 0 1 0 2 WSCD1 chr17:6013086 5'GT 6013086 Upstream 90bp 23210 chr16 50100334 50100334 1 + G A SKCM 50100335 + 50100315 50100355 41 GCGCAGGGCTGGCCCGGCTGGTGCAGCAGCGGCCGGCACTC GCGCAGGGCTGGCCCGGCTAGTGCAGCAGCGGCCGGCACTC < 41bp 0.504361166229251 0.724967945303575 NA NA prediction 0.441213558148647 Functional Gain - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50100335 chr16:50100334 synonymous SNV . 0 20 hm7G_associated_SNPs_25382 0 0 1 0 1 HEATR3 chr16:50100278 3'AG 50100278 Downstream 57bp 23211 chr20 2375901 2375901 1 + G T LUAD 2375902 + 2375882 2375922 41 AGACATCGGAGCTGGAGCGGGGTGAGGGCTGGACAGCAGCA AGACATCGGAGCTGGAGCGTGGTGAGGGCTGGACAGCAGCA < 41bp 0.679675588079879 0.900281956175996 NA NA prediction 0.441212736192234 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2375902 chr20:2375901 synonymous SNV . 0 20 hm7G_associated_SNPs_25383 0 0 0 0 1 TGM6 chr20:2375840 3'AG 2375840 Downstream 62bp 23212 chr17 34058838 34058838 1 + G T rs587755687 34058839 + 34058819 34058859 41 GGGGCAGCGCCGGAGCCCGGGGGGAGCTCAGCCCCGCCGAC GGGGCAGCGCCGGAGCCCGTGGGGAGCTCAGCCCCGCCGAC < 41bp 0.430869898811711 0.720584720693942 NA NA prediction 0.441169441387884 Functional Gain - RASL10B ENSG00000141150 UTR5 Human other chr17:34058839 chr17:34058838 . . 0 20 hm7G_associated_SNPs_25384 0 0 1 0 1 RASL10B chr17:34058897 5'GT 34058897 Upstream 60bp 23213 chr8 145730221 145730221 1 + G A rs112574791 145730222 + 145730202 145730242 41 CCTGACGATGCCAAGAAAAGGGCGGAGCGCATCTTGCAGGC CCTGACGATGCCAAGAAAAAGGCGGAGCGCATCTTGCAGGC < 41bp 0.492919234133933 0.720579288621629 NA NA prediction 0.441158577243259 Functional Gain - GPT ENSG00000167701 CDS Human protein_coding chr8:145730222 chr8:145730221 nonsynonymous SNV 0.187 1 20 hm7G_associated_SNPs_25386 0 0 0 0 2 GPT chr8:145730154 3'AG 145730154 Downstream 68bp 23214 chr8 145730221 145730221 1 + G A rs112574791 145730222 + 145730202 145730242 41 CCTGACGATGCCAAGAAAAGGGCGGAGCGCATCTTGCAGGC CCTGACGATGCCAAGAAAAAGGCGGAGCGCATCTTGCAGGC < 41bp 0.492919234133933 0.720579288621629 NA NA prediction 0.441158577243259 Functional Gain - GPT ENSG00000167701 CDS Human protein_coding chr8:145730222 chr8:145730221 nonsynonymous SNV 0.187 1 20 hm7G_associated_SNPs_25386 0 0 0 0 2 GPT chr8:145730262 5'GT 145730262 Upstream 42bp 23215 chr9 37762102 37762102 1 + G T UCEC 37762103 + 37762083 37762123 41 TCCTGGCCACAGGCAGTACGGCATGGTGCTCGGTGAGTGCG TCCTGGCCACAGGCAGTACTGCATGGTGCTCGGTGAGTGCG < 41bp 0.677686713936469 0.898262782368712 NA NA prediction 0.441152136864486 Functional Gain - TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37762103 chr9:37762102 synonymous SNV . 0 20 hm7G_associated_SNPs_25388 0 0 1 3 1 TRMT10B chr9:37762114 5'GT 37762114 Upstream 13bp 23216 chr4 996248 996248 1 + G A rs6836258 996249 + 996229 996269 41 TGCGCAAGCCGGTGCTCACGGCCATGGGGCTGCTGGCGCTG TGCGCAAGCCGGTGCTCACAGCCATGGGGCTGCTGGCGCTG < 41bp 0.489564645864022 0.720574649334394 NA NA prediction 0.441149298668787 Functional Gain - IDUA ENSG00000127415 CDS Human protein_coding chr4:996249 chr4:996248 synonymous SNV . 0 20 hm7G_associated_SNPs_25389 0 0 0 0 1 IDUA chr4:996273 5'GT 996273 Upstream 26bp 23217 chr11 66189662 66189662 1 + G A COAD 66189663 + 66189643 66189683 41 CATCGTAGCGGCACTACCCGGCTTTCTGCTTGTGTTCACAG CATCGTAGCGGCACTACCCAGCTTTCTGCTTGTGTTCACAG < 41bp 0.515865444352394 0.736433989630691 NA NA prediction 0.441137090556594 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189663 chr11:66189662 nonsynonymous SNV 0.582 4 20 hm7G_associated_SNPs_25390 0 0 0 0 2 NPAS4 chr11:66189591 3'AG 66189591 Downstream 72bp 23218 chr11 66189662 66189662 1 + G A COAD 66189663 + 66189643 66189683 41 CATCGTAGCGGCACTACCCGGCTTTCTGCTTGTGTTCACAG CATCGTAGCGGCACTACCCAGCTTTCTGCTTGTGTTCACAG < 41bp 0.515865444352394 0.736433989630691 NA NA prediction 0.441137090556594 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66189663 chr11:66189662 nonsynonymous SNV 0.582 4 20 hm7G_associated_SNPs_25390 0 0 0 0 2 NPAS4 chr11:66189742 5'GT 66189742 Upstream 81bp 23219 chr5 52206177 52206177 1 + G T LUAD 52206178 + 52206158 52206198 41 TCGTGATAGGAGCTCCGCTGGAAGATGATCACGGGGGAGCT TCGTGATAGGAGCTCCGCTTGAAGATGATCACGGGGGAGCT < 41bp 0.672151246418236 0.892716153126556 NA NA prediction 0.441129813416639 Functional Gain - ITGA1 ENSG00000213949 CDS Human protein_coding chr5:52206178 chr5:52206177 synonymous SNV . 0 20 hm7G_associated_SNPs_25391 0 0 0 0 1 ITGA1 chr5:52206249 5'GT 52206249 Upstream 73bp 23220 chr22 24583361 24583361 1 + G A LUSC 24583362 + 24583342 24583382 41 CGACTTCACCCTGCACAGCGGGCGCGTCCTGCCCCCAGGCA CGACTTCACCCTGCACAGCAGGCGCGTCCTGCCCCCAGGCA < 41bp 0.511704053085988 0.732255794366283 NA NA prediction 0.44110348256059 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24583362 chr22:24583361 nonsynonymous SNV 0.010 4 20 hm7G_associated_SNPs_25397 0 0 0 0 1 SUSD2 chr22:24583418 5'GT 24583418 Upstream 58bp 23221 chr19 49898410 49898410 1 + G A LUAD 49898411 + 49898391 49898431 41 CTACCTGGAGGCTGTGACAGGCCAGGGCCCCCAGGATGCAC CTACCTGGAGGCTGTGACAAGCCAGGGCCCCCAGGATGCAC < 41bp 0.516003879016947 0.736545367226033 NA NA prediction 0.441082976418174 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49898411 chr19:49898410 nonsynonymous SNV 0.940 2 20 hm7G_associated_SNPs_25400 0 0 0 0 1 CCDC155 chr19:49898363 3'AG 49898363 Downstream 48bp 23222 chr6 7403060 7403060 1 + G T SARC 7403061 + 7403041 7403081 41 TTATTCAAGATTTCGTCATGGCTATTGTAAAGGAAACCCTA TTATTCAAGATTTCGTCATTGCTATTGTAAAGGAAACCCTA < 41bp 0.667033353396913 0.887573420512001 NA NA prediction 0.441080134230177 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7403061 chr6:7403060 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25401 0 0 1 0 1 RIOK1 chr6:7403050 3'AG 7403050 Downstream 11bp 23223 chr5 23522809 23522809 1 + G A SKCM 23522810 + 23522790 23522830 41 GGACAGTGCAGTGGACAAGGGGCACCCCAACCGTTCAGCCC GGACAGTGCAGTGGACAAGAGGCACCCCAACCGTTCAGCCC < 41bp 0.511473081613557 0.73199630008194 NA NA prediction 0.441046436936765 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23522810 chr5:23522809 nonsynonymous SNV 0.126 1 20 hm7G_associated_SNPs_25403 0 0 0 0 1 PRDM9 chr5:23522723 3'AG 23522723 Downstream 87bp 23224 chr19 7986621 7986621 1 + G A SKCM 7986622 + 7986602 7986642 41 CTGGCTGAGAAGATAACAGGGCCACTGGAAGAAGCCCTGGC CTGGCTGAGAAGATAACAGAGCCACTGGAAGAAGCCCTGGC < 41bp 0.538662488540055 0.759184996404413 NA NA prediction 0.441045015728717 Functional Gain - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986622 chr19:7986621 nonsynonymous SNV 0.952 2 20 hm7G_associated_SNPs_25404 0 0 1 1 2 SNAPC2 chr19:7986590 3'AG 7986590 Downstream 32bp 23225 chr19 7986621 7986621 1 + G A SKCM 7986622 + 7986602 7986642 41 CTGGCTGAGAAGATAACAGGGCCACTGGAAGAAGCCCTGGC CTGGCTGAGAAGATAACAGAGCCACTGGAAGAAGCCCTGGC < 41bp 0.538662488540055 0.759184996404413 NA NA prediction 0.441045015728717 Functional Gain - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986622 chr19:7986621 nonsynonymous SNV 0.952 2 20 hm7G_associated_SNPs_25404 0 0 1 1 2 SNAPC2 chr19:7986658 5'GT 7986658 Upstream 38bp 23226 chr4 56818334 56818334 1 + G T UCEC 56818335 + 56818315 56818355 41 AGAAAGTATATTAATATTAGGAAAAGGCTGGATCAGCTGGG AGAAAGTATATTAATATTATGAAAAGGCTGGATCAGCTGGG < 41bp 0.661327393401455 0.881827634183356 NA NA prediction 0.441000481563802 Functional Gain - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56818335 chr4:56818334 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_25408 0 0 1 0 2 CEP135 chr4:56818252 3'AG 56818252 Downstream 83bp 23227 chr4 56818334 56818334 1 + G T UCEC 56818335 + 56818315 56818355 41 AGAAAGTATATTAATATTAGGAAAAGGCTGGATCAGCTGGG AGAAAGTATATTAATATTATGAAAAGGCTGGATCAGCTGGG < 41bp 0.661327393401455 0.881827634183356 NA NA prediction 0.441000481563802 Functional Gain - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56818335 chr4:56818334 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_25408 0 0 1 0 2 CEP135 chr4:56818409 5'GT 56818409 Upstream 76bp 23228 chr1 15789260 15789260 1 + G A rs146661868 15789261 + 15789241 15789281 41 TACCGCGTGGGGCTGGGCCGGCACAACCTCTACGTTGCGGA TACCGCGTGGGGCTGGGCCAGCACAACCTCTACGTTGCGGA < 41bp 0.533435739196797 0.753932505426797 NA NA prediction 0.44099353246 Functional Gain - CELA2A ENSG00000142615 CDS Human protein_coding chr1:15789261 chr1:15789260 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_25409 0 0 0 0 1 CELA2A chr1:15789228 3'AG 15789228 Downstream 33bp 23229 chr11 64981853 64981853 1 + G T rs239259 64981854 + 64981834 64981874 41 TGGCGCAGTCCGTCTACATGGCCGGGGTGCTGGTGGGGGCT TGGCGCAGTCCGTCTACATTGCCGGGGTGCTGGTGGGGGCT < 41bp 0.618160542863377 0.838655784616542 NA NA prediction 0.440990483506331 Functional Gain - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981854 chr11:64981853 . . 0 20 hm7G_associated_SNPs_25410 0 0 0 0 2 SLC22A20 chr11:64981797 3'AG 64981797 Downstream 57bp 23230 chr11 64981853 64981853 1 + G T rs239259 64981854 + 64981834 64981874 41 TGGCGCAGTCCGTCTACATGGCCGGGGTGCTGGTGGGGGCT TGGCGCAGTCCGTCTACATTGCCGGGGTGCTGGTGGGGGCT < 41bp 0.618160542863377 0.838655784616542 NA NA prediction 0.440990483506331 Functional Gain - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64981854 chr11:64981853 . . 0 20 hm7G_associated_SNPs_25410 0 0 0 0 2 SLC22A20 chr11:64981900 5'GT 64981900 Upstream 48bp 23231 chr8 38250513 38250513 1 + G T COAD 38250514 + 38250494 38250534 41 CCAGACGAGAGAGACGAAGGGTAGGCAAGAATCATATTTGA CCAGACGAGAGAGACGAAGTGTAGGCAAGAATCATATTTGA < 41bp 0.418110310464354 0.720492350752574 NA NA prediction 0.440984701505149 Functional Gain - LETM2 ENSG00000165046 CDS Human protein_coding chr8:38250514 chr8:38250513 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25411 0 0 0 0 1 LETM2 chr8:38250513 3'AG 38250513 Downstream 1bp 23232 chr2 9593085 9593085 1 + G T THCA 9593086 + 9593066 9593106 41 AAACCAGAACAAGGCCAGCGGGTCTCAGGAATACTTGTTAA AAACCAGAACAAGGCCAGCTGGTCTCAGGAATACTTGTTAA < 41bp 0.672491155395706 0.892975765772567 NA NA prediction 0.440969220753722 Functional Gain - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9593086 chr2:9593085 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_25412 0 0 1 0 2 CPSF3 chr2:9593042 3'AG 9593042 Downstream 44bp 23233 chr2 9593085 9593085 1 + G T THCA 9593086 + 9593066 9593106 41 AAACCAGAACAAGGCCAGCGGGTCTCAGGAATACTTGTTAA AAACCAGAACAAGGCCAGCTGGTCTCAGGAATACTTGTTAA < 41bp 0.672491155395706 0.892975765772567 NA NA prediction 0.440969220753722 Functional Gain - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9593086 chr2:9593085 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_25412 0 0 1 0 2 CPSF3 chr2:9593150 5'GT 9593150 Upstream 66bp 23234 chr20 25255336 25255336 1 + G A UCEC 25255337 + 25255317 25255357 41 CGTGGAGCACACCCCCGACGGCGTGAAGTGGCTGGACACAC CGTGGAGCACACCCCCGACAGCGTGAAGTGGCTGGACACAC < 41bp 0.504314639474192 0.7247955587352 NA NA prediction 0.440961838522015 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25255337 chr20:25255336 nonsynonymous SNV 0.026 2 20 hm7G_associated_SNPs_25414 0 0 1 0 1 PYGB chr20:25255359 5'GT 25255359 Upstream 24bp 23235 chr17 25748064 25748064 1 + G T GBM 25748065 + 25748045 25748085 41 CCAGTCCTTTCTGGGGGTCGGCTCCCAGACCGAGATGGCTC CCAGTCCTTTCTGGGGGTCTGCTCCCAGACCGAGATGGCTC < 41bp 0.658179130837648 0.87865988739561 NA NA prediction 0.440961513115923 Functional Gain - TBC1D3P5 ENSG00000266433 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:25748065 chr17:25748064 . . 0 20 hm7G_associated_SNPs_25415 0 0 0 0 1 TBC1D3P5 chr17:25748017 3'AG 25748017 Downstream 48bp 23236 chrX 150841116 150841116 1 + G T UCEC 150841117 + 150841097 150841137 41 ATGAAAACTGTGGGCAACAGGAAGATGAGAGTCAAAGGTAA ATGAAAACTGTGGGCAACATGAAGATGAGAGTCAAAGGTAA < 41bp 0.396826437059032 0.720478294231167 NA NA prediction 0.440956588462333 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150841117 chrX:150841116 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_25417 0 0 0 0 1 PASD1 chrX:150841133 5'GT 150841133 Upstream 18bp 23237 chr12 57965884 57965884 1 + G A UCEC 57965885 + 57965865 57965905 41 GACAACGAGAAGGTCCAGCGGGAGCTGAGCCACCTGCAATC GACAACGAGAAGGTCCAGCAGGAGCTGAGCCACCTGCAATC < 41bp 0.502116042933255 0.722591614391288 NA NA prediction 0.440951142916066 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57965885 chr12:57965884 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_25418 0 0 1 0 1 KIF5A chr12:57965844 3'AG 57965844 Downstream 41bp 23238 chrX 153692337 153692337 1 + G A UCEC 153692338 + 153692318 153692358 41 GGGCGCCTCTGCCCCACACGGCTTTGCTGAGGAGCTGAGCA GGGCGCCTCTGCCCCACACAGCTTTGCTGAGGAGCTGAGCA < 41bp 0.487576437920321 0.720473443093137 NA NA prediction 0.440946886186273 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153692338 chrX:153692337 nonsynonymous SNV 0.279 0 20 hm7G_associated_SNPs_25419 0 0 0 0 2 PLXNA3 chrX:153692294 3'AG 153692294 Downstream 44bp 23239 chrX 153692337 153692337 1 + G A UCEC 153692338 + 153692318 153692358 41 GGGCGCCTCTGCCCCACACGGCTTTGCTGAGGAGCTGAGCA GGGCGCCTCTGCCCCACACAGCTTTGCTGAGGAGCTGAGCA < 41bp 0.487576437920321 0.720473443093137 NA NA prediction 0.440946886186273 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153692338 chrX:153692337 nonsynonymous SNV 0.279 0 20 hm7G_associated_SNPs_25419 0 0 0 0 2 PLXNA3 chrX:153692417 5'GT 153692417 Upstream 81bp 23240 chr1 1120453 1120453 1 + G A SKCM 1120454 + 1120434 1120474 41 ACACGTTCTGGAAGGCCCGGGGCCTCGCCAAGGACTGGGTC ACACGTTCTGGAAGGCCCGAGGCCTCGCCAAGGACTGGGTC < 41bp 0.517650680167378 0.73812082464057 NA NA prediction 0.440940288946384 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1120454 chr1:1120453 synonymous SNV . 0 20 hm7G_associated_SNPs_25420 0 0 0 0 1 TTLL10 chr1:1120489 5'GT 1120489 Upstream 37bp 23241 chr3 107447803 107447803 1 + G T LUSC 107447804 + 107447784 107447824 41 CTCAGCTTAACTTTGGAATGGCTGGTGAGTTGAGACACTAT CTCAGCTTAACTTTGGAATTGCTGGTGAGTTGAGACACTAT < 41bp 0.408672641033803 0.720469957227118 NA NA prediction 0.440939914454236 Functional Gain - BBX ENSG00000114439 CDS Human protein_coding chr3:107447804 chr3:107447803 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_25421 0 0 1 0 1 BBX chr3:107447807 5'GT 107447807 Upstream 5bp 23242 chr1 183184616 183184616 1 + C T rs2274980 183184617 + 183184597 183184637 41 GTGCTCGATGTGACAACTCCGGACGGTGCAGCTGTAAACCA GTGCTCGATGTGACAACTCTGGACGGTGCAGCTGTAAACCA < 41bp 0.503255591510473 0.723723569695577 NA NA prediction 0.440935956370209 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183184617 chr1:183184616 synonymous SNV . 0 20 hm7G_associated_SNPs_25422 2 0 0 0 1 LAMC2 chr1:183184588 3'AG 183184588 Downstream 29bp 23243 chr14 62547585 62547585 1 + G T LUAD 62547586 + 62547566 62547606 41 CAATTTGCAGGTGCCATCCGGGGTCTCAGAGCCCATCTCAA CAATTTGCAGGTGCCATCCTGGGTCTCAGAGCCCATCTCAA < 41bp 0.384931457729744 0.720449022085332 NA NA prediction 0.440898044170664 Functional Gain - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62547586 chr14:62547585 nonsynonymous SNV 0.028 1 20 hm7G_associated_SNPs_25423 0 0 0 0 1 SYT16 chr14:62547552 3'AG 62547552 Downstream 34bp 23244 chr17 43216425 43216425 1 + G A SKCM 43216426 + 43216406 43216446 41 CGCCGGGGCCCCAGGAGTTGGACGTGTGGCTGCTGGGGACA CGCCGGGGCCCCAGGAGTTAGACGTGTGGCTGCTGGGGACA < 41bp 0.531093860510436 0.751534354813179 NA NA prediction 0.440880988605487 Functional Gain - ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43216426 chr17:43216425 stopgain 0.913 0 20 hm7G_associated_SNPs_25424 0 0 1 0 1 ACBD4 chr17:43216388 3'AG 43216388 Downstream 38bp 23245 chr18 6896512 6896512 1 + G T PRAD 6896513 + 6896493 6896533 41 CTTGGCAGTCTGACGTGCCGGAAGGAGTCATACGGGTCCAT CTTGGCAGTCTGACGTGCCTGAAGGAGTCATACGGGTCCAT < 41bp 0.389398287599252 0.720440186729768 NA NA prediction 0.440880373459537 Functional Gain - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6896513 chr18:6896512 synonymous SNV . 0 20 hm7G_associated_SNPs_25426 0 0 0 0 1 ARHGAP28 chr18:6896501 3'AG 6896501 Downstream 12bp 23246 chr19 50212025 50212025 1 + G T LUAD 50212026 + 50212006 50212046 41 GCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCCGG GCTGGGCTACTCAACAGACTGCCACTGCAAGGGGCACCCGG < 41bp 0.6874608753636 0.907893272647136 NA NA prediction 0.440864794567072 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50212026 chr19:50212025 nonsynonymous SNV 0.666 5 20 hm7G_associated_SNPs_25427 0 0 0 0 2 CPT1C chr19:50211980 3'AG 50211980 Downstream 46bp 23247 chr19 50212025 50212025 1 + G T LUAD 50212026 + 50212006 50212046 41 GCTGGGCTACTCAACAGACGGCCACTGCAAGGGGCACCCGG GCTGGGCTACTCAACAGACTGCCACTGCAAGGGGCACCCGG < 41bp 0.6874608753636 0.907893272647136 NA NA prediction 0.440864794567072 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50212026 chr19:50212025 nonsynonymous SNV 0.666 5 20 hm7G_associated_SNPs_25427 0 0 0 0 2 CPT1C chr19:50212096 5'GT 50212096 Upstream 72bp 23248 chr11 119058115 119058115 1 + G A UCEC 119058116 + 119058096 119058136 41 GGCCCAGGGGTCCGGCCCCGGCTGTGCCACATAGTGAAAGA GGCCCAGGGGTCCGGCCCCAGCTGTGCCACATAGTGAAAGA < 41bp 0.520620178154804 0.741048972371773 NA NA prediction 0.440857588433939 Functional Gain - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119058116 chr11:119058115 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_25428 0 0 0 0 1 PDZD3 chr11:119058168 5'GT 119058168 Upstream 54bp 23249 chr17 37817122 37817122 1 + G A UCEC 37817123 + 37817103 37817143 41 ACGTGTCTGCAGGGGCTGCGGGCGGCGTGGTCTCCCCAAGG ACGTGTCTGCAGGGGCTGCAGGCGGCGTGGTCTCCCCAAGG < 41bp 0.512446723751856 0.732874241288879 NA NA prediction 0.440855035074046 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37817123 chr17:37817122 synonymous SNV . 0 20 hm7G_associated_SNPs_25430 0 0 1 0 2 STARD3 chr17:37817063 3'AG 37817063 Downstream 60bp 23250 chr17 37817122 37817122 1 + G A UCEC 37817123 + 37817103 37817143 41 ACGTGTCTGCAGGGGCTGCGGGCGGCGTGGTCTCCCCAAGG ACGTGTCTGCAGGGGCTGCAGGCGGCGTGGTCTCCCCAAGG < 41bp 0.512446723751856 0.732874241288879 NA NA prediction 0.440855035074046 Functional Gain - STARD3 ENSG00000131748 CDS Human protein_coding chr17:37817123 chr17:37817122 synonymous SNV . 0 20 hm7G_associated_SNPs_25430 0 0 1 0 2 STARD3 chr17:37817142 5'GT 37817142 Upstream 21bp 23251 chr1 1114668 1114668 1 + G A rs6668667 1114669 + 1114649 1114689 41 CCGAGCCGGCTTCAAGAGGGGCAAGAGGCCAAGGATCCAGC CCGAGCCGGCTTCAAGAGGAGCAAGAGGCCAAGGATCCAGC < 41bp 0.529364397648834 0.749791546162773 NA NA prediction 0.440854297027877 Functional Gain - TTLL10 ENSG00000162571 CDS Human antisense chr1:1114669 chr1:1114668 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_25431 0 0 0 0 2 TTLL10 chr1:1114569 3'AG 1114569 Downstream 100bp 23252 chr1 1114668 1114668 1 + G A rs6668667 1114669 + 1114649 1114689 41 CCGAGCCGGCTTCAAGAGGGGCAAGAGGCCAAGGATCCAGC CCGAGCCGGCTTCAAGAGGAGCAAGAGGCCAAGGATCCAGC < 41bp 0.529364397648834 0.749791546162773 NA NA prediction 0.440854297027877 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1114669 chr1:1114668 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_25431 0 0 0 0 2 TTLL10 chr1:1114713 5'GT 1114713 Upstream 46bp 23253 chrX 140985250 140985250 1 + G T LUSC 140985251 + 140985231 140985271 41 GTCCCCGAGGAGGTCATCTGGGAAGTGTTGAGTGCAATAGG GTCCCCGAGGAGGTCATCTTGGAAGTGTTGAGTGCAATAGG < 41bp 0.389753990039754 0.720422504028629 NA NA prediction 0.440845008057258 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140985251 chrX:140985250 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_25432 0 0 0 0 1 MAGEC3 chrX:140985272 5'GT 140985272 Upstream 23bp 23254 chr19 39589177 39589177 1 + G A rs11881432 39589178 + 39589158 39589198 41 AATTCGGGTTGCAGCCGTCGGGGCCCCTGCCCCTCCGCGCC AATTCGGGTTGCAGCCGTCAGGGCCCCTGCCCCTCCGCGCC < 41bp 0.489832575552049 0.720410681793324 NA NA prediction 0.440821363586648 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589178 chr19:39589177 synonymous SNV . 0 20 hm7G_associated_SNPs_25434 0 0 0 0 1 ACP7 chr19:39589098 3'AG 39589098 Downstream 80bp 23255 chr3 154858076 154858076 1 + G T LUSC 154858077 + 154858057 154858097 41 CTTTTCACTAGAGATCAATGGGAAGGTAAGTGGTAAGTTTT CTTTTCACTAGAGATCAATTGGAAGGTAAGTGGTAAGTTTT < 41bp 0.397573343961456 0.720400382788295 NA NA prediction 0.440800765576589 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154858077 chr3:154858076 nonsynonymous SNV 0.891 3 20 hm7G_associated_SNPs_25436 0 0 0 0 1 MME chr3:154858081 5'GT 154858081 Upstream 6bp 23256 chr4 100461582 100461582 1 + G T UCEC 100461583 + 100461563 100461603 41 ATCTAGAGTGTCAAGTCAAGGATCTGAAGAAAACAAGGAAG ATCTAGAGTGTCAAGTCAATGATCTGAAGAAAACAAGGAAG < 41bp 0.649580699684781 0.869974041218433 NA NA prediction 0.440786683067302 Functional Gain - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100461583 chr4:100461582 stopgain 0.999 0 20 hm7G_associated_SNPs_25437 0 0 0 0 1 C4orf17 chr4:100461612 5'GT 100461612 Upstream 31bp 23257 chr17 47246125 47246125 1 + G T UCEC 47246126 + 47246106 47246146 41 GGGGCCTGCCTTCACAAGAGGATGGGATTTTTCCAACCCCT GGGGCCTGCCTTCACAAGATGATGGGATTTTTCCAACCCCT < 41bp 0.384127437650619 0.720386405306489 NA NA prediction 0.440772810612978 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47246126 chr17:47246125 nonsynonymous SNV 0.474 3 20 hm7G_associated_SNPs_25438 0 0 0 0 1 B4GALNT2 chr17:47246043 3'AG 47246043 Downstream 83bp 23258 chr19 12088997 12088997 1 + G T LUAD 12088998 + 12088978 12089018 41 GTGGAGAAACTTTTACCCAGGTTCCAGATGACAGGCTGAAC GTGGAGAAACTTTTACCCATGTTCCAGATGACAGGCTGAAC < 41bp 0.417515319229793 0.720386176193344 NA NA prediction 0.440772352386687 Functional Gain - ZNF763 ENSG00000197054;ENSG00000267179 CDS Human other chr19:12088998 chr19:12088997 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_25439 0 0 0 0 1 ZNF763 chr19:12088931 3'AG 12088931 Downstream 67bp 23259 chr19 4157247 4157247 1 + G T LUAD 4157248 + 4157228 4157268 41 TTGCTCCACCACAACCCCAGGGCCAGTGATCCAAGTACCTG TTGCTCCACCACAACCCCATGGCCAGTGATCCAAGTACCTG < 41bp 0.368025795344077 0.720385851860595 NA NA prediction 0.440771703721191 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4157248 chr19:4157247 nonsynonymous SNV 0.001 4 20 hm7G_associated_SNPs_25440 0 0 1 0 1 CREB3L3 chr19:4157292 5'GT 4157292 Upstream 46bp 23260 chr4 660340 660340 1 + G A rs61739716 660341 + 660321 660361 41 CTATGATGGACCGGAACAAGGCGGCCGAGCTCCCCAAGCTG CTATGATGGACCGGAACAAAGCGGCCGAGCTCCCCAAGCTG < 41bp 0.514850177138668 0.735232002259931 NA NA prediction 0.440763650242526 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:660341 chr4:660340 synonymous SNV . 0 20 hm7G_associated_SNPs_25441 2 0 0 0 1 PDE6B chr4:660320 3'AG 660320 Downstream 21bp 23261 chr11 46388940 46388940 1 + G T LUSC 46388941 + 46388921 46388961 41 GGCAGATCCGGAGTACAGTGGACTGGAGCGTGAGTGCCTGA GGCAGATCCGGAGTACAGTTGACTGGAGCGTGAGTGCCTGA < 41bp 0.376862824524478 0.720378442509448 NA NA prediction 0.440756885018895 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388941 chr11:46388940 synonymous SNV . 0 20 hm7G_associated_SNPs_25443 0 0 1 0 1 DGKZ chr11:46388841 3'AG 46388841 Downstream 100bp 23262 chr21 45798927 45798927 1 + G A rs140170729 45798928 + 45798908 45798948 41 CCCCCTGTGTGGTTGTGGAGGGCTCGGGCCGCGTGGCCGAC CCCCCTGTGTGGTTGTGGAAGGCTCGGGCCGCGTGGCCGAC < 41bp 0.506285450286033 0.7266582254057 NA NA prediction 0.440745550239334 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45798928 chr21:45798927 synonymous SNV . 0 20 hm7G_associated_SNPs_25444 0 0 0 0 1 TRPM2 chr21:45798880 3'AG 45798880 Downstream 48bp 23263 chr8 70541742 70541742 1 + G T HNSC 70541743 + 70541723 70541763 41 CCTTCTCTTGGAACAGGGAGGCTGCTCAGGAAGTAGATAGC CCTTCTCTTGGAACAGGGATGCTGCTCAGGAAGTAGATAGC < 41bp 0.673131881143414 0.893496203561178 NA NA prediction 0.440728644835527 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70541743 chr8:70541742 nonsynonymous SNV 0.966 1 20 hm7G_associated_SNPs_25447 0 0 0 0 1 SULF1 chr8:70541739 3'AG 70541739 Downstream 4bp 23264 chr9 34976551 34976551 1 + G T UCEC 34976552 + 34976532 34976572 41 ATTGCTCCCTGACACTGGAGGACTTTCTGCGTTACCGCCAC ATTGCTCCCTGACACTGGATGACTTTCTGCGTTACCGCCAC < 41bp 0.3776395474206 0.720342020274928 NA NA prediction 0.440684040549857 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34976552 chr9:34976551 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_25450 0 0 0 0 1 PHF24 chr9:34976532 3'AG 34976532 Downstream 20bp 23265 chr15 23260867 23260867 1 + G T UCEC 23260868 + 23260848 23260888 41 TAGAGCAGTCCATGCGGGAGGAGGCACTACTGAAAGTGCAG TAGAGCAGTCCATGCGGGATGAGGCACTACTGAAAGTGCAG < 41bp 0.379216931862908 0.72033505697971 NA NA prediction 0.44067011395942 Functional Gain - GOLGA8IP ENSG00000153666 CDS Human other chr15:23260868 chr15:23260867 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_25451 0 0 0 0 2 GOLGA8IP chr15:23260811 3'AG 23260811 Downstream 57bp 23266 chr15 23260867 23260867 1 + G T UCEC 23260868 + 23260848 23260888 41 TAGAGCAGTCCATGCGGGAGGAGGCACTACTGAAAGTGCAG TAGAGCAGTCCATGCGGGATGAGGCACTACTGAAAGTGCAG < 41bp 0.379216931862908 0.72033505697971 NA NA prediction 0.44067011395942 Functional Gain - GOLGA8IP ENSG00000153666 CDS Human other chr15:23260868 chr15:23260867 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_25451 0 0 0 0 2 GOLGA8IP chr15:23260897 5'GT 23260897 Upstream 31bp 23267 chr6 150269921 150269921 1 + G T rs114531652 150269922 + 150269902 150269942 41 CAAACTCGCCCTTCTGTCTGGCCAGCTGCCCACGACCTACG CAAACTCGCCCTTCTGTCTTGCCAGCTGCCCACGACCTACG < 41bp 0.413618677982903 0.720330625965689 NA NA prediction 0.440661251931378 Functional Gain - ULBP2 ENSG00000131015 UTR3 Human protein_coding chr6:150269922 chr6:150269921 . . 0 20 hm7G_associated_SNPs_25452 0 0 1 0 1 ULBP2 chr6:150269859 3'AG 150269859 Downstream 63bp 23268 chr1 41303398 41303398 1 + G A SKCM 41303399 + 41303379 41303419 41 CCGGGAGAAGGGCGACAAGGGGCCCTCCGACGCGGAGGTGG CCGGGAGAAGGGCGACAAGAGGCCCTCCGACGCGGAGGTGG < 41bp 0.542953015455846 0.763263601729567 NA NA prediction 0.440621172547443 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41303399 chr1:41303398 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_25455 0 0 0 0 1 KCNQ4 chr1:41303466 5'GT 41303466 Upstream 69bp 23269 chr5 34880347 34880347 1 + G T HNSC 34880348 + 34880328 34880368 41 GAGCAACATTGGGCTCAGAGGATTTTGAAACACTGAGCACC GAGCAACATTGGGCTCAGATGATTTTGAAACACTGAGCACC < 41bp 0.406866128038282 0.720302209218484 NA NA prediction 0.440604418436969 Functional Gain - TTC23L ENSG00000205838 CDS Human protein_coding chr5:34880348 chr5:34880347 nonsynonymous SNV 0.965 0 20 hm7G_associated_SNPs_25457 0 0 0 1 1 TTC23L chr5:34880286 3'AG 34880286 Downstream 62bp 23270 chr12 117465839 117465839 1 + G T LUSC 117465840 + 117465820 117465860 41 GTGCTCTTTCTAGACACCGGGGGCTGATCCGCGCCTATGAG GTGCTCTTTCTAGACACCGTGGGCTGATCCGCGCCTATGAG < 41bp 0.387382709109462 0.720284164214323 NA NA prediction 0.440568328428646 Functional Gain - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117465840 chr12:117465839 synonymous SNV . 0 20 hm7G_associated_SNPs_25458 0 0 0 0 1 FBXW8 chr12:117465833 3'AG 117465833 Downstream 7bp 23271 chr5 131398393 131398393 1 + G T LUAD 131398394 + 131398374 131398414 41 CATATCAAGGACGGTGACTGGAATGAATTCCGGAGGAAACT CATATCAAGGACGGTGACTTGAATGAATTCCGGAGGAAACT < 41bp 0.651411441586778 0.871686896071862 NA NA prediction 0.440550908970167 Functional Gain - IL3 ENSG00000164399 CDS Human protein_coding chr5:131398394 chr5:131398393 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_25459 0 0 0 0 1 IL3 chr5:131398362 3'AG 131398362 Downstream 32bp 23272 chr8 1574943 1574943 1 + G T LUAD 1574944 + 1574924 1574964 41 TGCAAGCGATGTGCCTGTGGGACACAGCCTGGACCCCGCTG TGCAAGCGATGTGCCTGTGTGACACAGCCTGGACCCCGCTG < 41bp 0.37430386087214 0.720241839534167 NA NA prediction 0.440483679068335 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1574944 chr8:1574943 stopgain 0.350 1 20 hm7G_associated_SNPs_25461 0 0 0 0 1 DLGAP2 chr8:1574906 3'AG 1574906 Downstream 38bp 23273 chr20 56140450 56140450 1 + G T STAD 56140451 + 56140431 56140471 41 TGCCATGCGGCCCTTCTTTGGCTACAACTTCGGCAAATACC TGCCATGCGGCCCTTCTTTTGCTACAACTTCGGCAAATACC < 41bp 0.67380029930294 0.894030912104244 NA NA prediction 0.440461225602609 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56140451 chr20:56140450 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_25463 0 0 1 0 1 PCK1 chr20:56140406 3'AG 56140406 Downstream 45bp 23274 chr2 220497036 220497036 1 + G A SKCM 220497037 + 220497017 220497057 41 CGCAGCCAGGAGCCCCACTGGCGGGAGACGGCCCGCTGGAT CGCAGCCAGGAGCCCCACTAGCGGGAGACGGCCCGCTGGAT < 41bp 0.495077440492204 0.720222044386464 NA NA prediction 0.440444088772927 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220497037 chr2:220497036 stopgain 1.000 1 20 hm7G_associated_SNPs_25464 0 0 0 0 1 SLC4A3 chr2:220496984 3'AG 220496984 Downstream 53bp 23275 chr2 241808728 241808728 1 + G A SKCM 241808729 + 241808709 241808749 41 TGGGGACTCCTTCCTGGTTGGGGCCAATGGCATTTGGGGGC TGGGGACTCCTTCCTGGTTAGGGCCAATGGCATTTGGGGGC < 41bp 0.516906058473079 0.737119854698079 NA NA prediction 0.44042759245 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808729 chr2:241808728 nonsynonymous SNV 0.472 5 20 hm7G_associated_SNPs_25468 0 0 1 0 1 AGXT chr2:241808779 5'GT 241808779 Upstream 52bp 23276 chr3 56651184 56651184 1 + G T STAD 56651185 + 56651165 56651205 41 CAATGCAGAATCACATTGTGGATCATTAATGGAGAGGGACA CAATGCAGAATCACATTGTTGATCATTAATGGAGAGGGACA < 41bp 0.402361238067926 0.72020811243945 NA NA prediction 0.4404162248789 Functional Gain - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56651185 chr3:56651184 stopgain 0.033 0 20 hm7G_associated_SNPs_25470 0 0 1 1 1 CCDC66 chr3:56651140 3'AG 56651140 Downstream 45bp 23277 chr16 67208559 67208559 1 + G A rs2233458 67208560 + 67208540 67208580 41 CTATGACCCTCCATGCCCAGGCCACTGGACGCCGGAGGCAC CTATGACCCTCCATGCCCAAGCCACTGGACGCCGGAGGCAC < 41bp 0.535193474441313 0.755399410923562 NA NA prediction 0.440411872964498 Functional Gain - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208560 chr16:67208559 nonsynonymous SNV 0.757 2 20 hm7G_associated_SNPs_25472 0 0 0 0 1 NOL3 chr16:67208524 3'AG 67208524 Downstream 36bp 23278 chrX 122538698 122538698 1 + G T SKCM 122538699 + 122538679 122538719 41 TTGTCCATCGTTGGTGACGGGAAATATGGTGCAAGGGATCC TTGTCCATCGTTGGTGACGTGAAATATGGTGCAAGGGATCC < 41bp 0.394457041106697 0.720205370256211 NA NA prediction 0.440410740512422 Functional Gain - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122538699 chrX:122538698 nonsynonymous SNV 0.874 3 20 hm7G_associated_SNPs_25473 0 0 0 0 1 GRIA3 chrX:122538765 5'GT 122538765 Upstream 68bp 23279 chr1 220752872 220752872 1 + G T LUAD 220752873 + 220752853 220752893 41 ATTTTGCCAAAGTCAAATTGGCAAGACACGTTCTAACTGGT ATTTTGCCAAAGTCAAATTTGCAAGACACGTTCTAACTGGT < 41bp 0.390277456053502 0.72019429499441 NA NA prediction 0.44038858998882 Functional Gain - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220752873 chr1:220752872 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25475 0 0 0 0 1 MARK1 chr1:220752899 5'GT 220752899 Upstream 28bp 23280 chr3 113327014 113327014 1 + C T SKCM 113327015 + 113326995 113327035 41 CCTGCTGATAGTCTTGCGCCGCGACATCCTCCATCGGAGAG CCTGCTGATAGTCTTGCGCTGCGACATCCTCCATCGGAGAG < 41bp 0.502614107072945 0.722804548237559 NA NA prediction 0.440380882329227 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113327015 chr3:113327014 nonsynonymous SNV 0.223 4 20 hm7G_associated_SNPs_25476 0 0 0 0 2 SIDT1 chr3:113326941 3'AG 113326941 Downstream 74bp 23281 chr3 113327014 113327014 1 + C T SKCM 113327015 + 113326995 113327035 41 CCTGCTGATAGTCTTGCGCCGCGACATCCTCCATCGGAGAG CCTGCTGATAGTCTTGCGCTGCGACATCCTCCATCGGAGAG < 41bp 0.502614107072945 0.722804548237559 NA NA prediction 0.440380882329227 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113327015 chr3:113327014 nonsynonymous SNV 0.223 4 20 hm7G_associated_SNPs_25476 0 0 0 0 2 SIDT1 chr3:113327064 5'GT 113327064 Upstream 51bp 23282 chr15 40656717 40656717 1 + G T STAD 40656718 + 40656698 40656738 41 GCTGGACTGTTGGGGGCCCGGCTGCCCGACTTCTCCAAGCC GCTGGACTGTTGGGGGCCCTGCTGCCCGACTTCTCCAAGCC < 41bp 0.362831873144381 0.720183050603178 NA NA prediction 0.440366101206355 Functional Gain - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40656718 chr15:40656717 nonsynonymous SNV 0.020 0 20 hm7G_associated_SNPs_25477 0 0 0 0 2 DISP2 chr15:40656622 3'AG 40656622 Downstream 96bp 23283 chr15 40656717 40656717 1 + G T STAD 40656718 + 40656698 40656738 41 GCTGGACTGTTGGGGGCCCGGCTGCCCGACTTCTCCAAGCC GCTGGACTGTTGGGGGCCCTGCTGCCCGACTTCTCCAAGCC < 41bp 0.362831873144381 0.720183050603178 NA NA prediction 0.440366101206355 Functional Gain - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40656718 chr15:40656717 nonsynonymous SNV 0.020 0 20 hm7G_associated_SNPs_25477 0 0 0 0 2 DISP2 chr15:40656745 5'GT 40656745 Upstream 29bp 23284 chr7 76027102 76027102 1 + G A SKCM 76027103 + 76027083 76027123 41 CTGTGCAGGATCTCCACTCGGCCCTGACACAGGTTCGCGCC CTGTGCAGGATCTCCACTCAGCCCTGACACAGGTTCGCGCC < 41bp 0.523278857837494 0.743459851607903 NA NA prediction 0.440361987540817 Functional Gain - SSC4D ENSG00000146700 CDS Human protein_coding chr7:76027103 chr7:76027102 stopgain 0.932 0 20 hm7G_associated_SNPs_25479 0 0 0 0 1 SSC4D chr7:76027114 5'GT 76027114 Upstream 13bp 23285 chr19 37870072 37870072 1 + G T LUAD 37870073 + 37870053 37870093 41 ACTTTTCCCAAGAAGAGTGGGAATGGCTGAAGCCATCTCAG ACTTTTCCCAAGAAGAGTGTGAATGGCTGAAGCCATCTCAG < 41bp 0.675008662321008 0.895177879434244 NA NA prediction 0.440338434226473 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37870073 chr19:37870072 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_25480 0 0 0 2 2 ZNF527 chr19:37870022 3'AG 37870022 Downstream 51bp 23286 chr19 37870072 37870072 1 + G T LUAD 37870073 + 37870053 37870093 41 ACTTTTCCCAAGAAGAGTGGGAATGGCTGAAGCCATCTCAG ACTTTTCCCAAGAAGAGTGTGAATGGCTGAAGCCATCTCAG < 41bp 0.675008662321008 0.895177879434244 NA NA prediction 0.440338434226473 Functional Gain - ZNF527 ENSG00000189164 CDS Human protein_coding chr19:37870073 chr19:37870072 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_25480 0 0 0 2 2 ZNF527 chr19:37870148 5'GT 37870148 Upstream 77bp 23287 chr14 65521360 65521360 1 + G T UCEC 65521361 + 65521341 65521381 41 AGCCCAGCACTTCGGCAGCGGAGCCATGTTGCATGATGTGG AGCCCAGCACTTCGGCAGCTGAGCCATGTTGCATGATGTGG < 41bp 0.3723743234504 0.720167439744781 NA NA prediction 0.440334879489562 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65521361 chr14:65521360 stopgain 0.993 0 20 hm7G_associated_SNPs_25481 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65521293 3'AG 65521293 Downstream 68bp 23288 chr14 65521360 65521360 1 + G T UCEC 65521361 + 65521341 65521381 41 AGCCCAGCACTTCGGCAGCGGAGCCATGTTGCATGATGTGG AGCCCAGCACTTCGGCAGCTGAGCCATGTTGCATGATGTGG < 41bp 0.3723743234504 0.720167439744781 NA NA prediction 0.440334879489562 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65521361 chr14:65521360 stopgain 0.993 0 20 hm7G_associated_SNPs_25481 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65521407 5'GT 65521407 Upstream 48bp 23289 chr9 139230441 139230441 1 + G A rs145180092 139230442 + 139230422 139230462 41 GGACCATCGGTGACCGCATGGGGGAGGCCAAGGCCAGTGGA GGACCATCGGTGACCGCATAGGGGAGGCCAAGGCCAGTGGA < 41bp 0.496765326246686 0.72016605309298 NA NA prediction 0.440332106185959 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139230442 chr9:139230441 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_25482 0 0 0 0 1 GPSM1 chr9:139230423 3'AG 139230423 Downstream 19bp 23290 chr3 39111148 39111148 1 + G T STAD 39111149 + 39111129 39111169 41 CACAGGTGTTACGGGTATGGGATCCAAGAACATGTGCAAAA CACAGGTGTTACGGGTATGTGATCCAAGAACATGTGCAAAA < 41bp 0.402455004519174 0.720161965125882 NA NA prediction 0.440323930251764 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39111149 chr3:39111148 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_25483 0 0 1 0 2 WDR48 chr3:39111134 3'AG 39111134 Downstream 15bp 23291 chr3 39111148 39111148 1 + G T STAD 39111149 + 39111129 39111169 41 CACAGGTGTTACGGGTATGGGATCCAAGAACATGTGCAAAA CACAGGTGTTACGGGTATGTGATCCAAGAACATGTGCAAAA < 41bp 0.402455004519174 0.720161965125882 NA NA prediction 0.440323930251764 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39111149 chr3:39111148 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_25483 0 0 1 0 2 WDR48 chr3:39111235 5'GT 39111235 Upstream 88bp 23292 chr3 10916719 10916719 1 + G T LUSC 10916720 + 10916700 10916740 41 CGAGGGGTCACGTTGCCCGGGGCCTCAGAGGGCATCAAGTT CGAGGGGTCACGTTGCCCGTGGCCTCAGAGGGCATCAAGTT < 41bp 0.381754194596273 0.720134587600562 NA NA prediction 0.440269175201123 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916720 chr3:10916719 nonsynonymous SNV 0.559 5 20 hm7G_associated_SNPs_25488 0 0 1 0 2 SLC6A11 chr3:10916646 3'AG 10916646 Downstream 74bp 23293 chr3 10916719 10916719 1 + G T LUSC 10916720 + 10916700 10916740 41 CGAGGGGTCACGTTGCCCGGGGCCTCAGAGGGCATCAAGTT CGAGGGGTCACGTTGCCCGTGGCCTCAGAGGGCATCAAGTT < 41bp 0.381754194596273 0.720134587600562 NA NA prediction 0.440269175201123 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916720 chr3:10916719 nonsynonymous SNV 0.559 5 20 hm7G_associated_SNPs_25488 0 0 1 0 2 SLC6A11 chr3:10916780 5'GT 10916780 Upstream 62bp 23294 chrX 100505950 100505950 1 + G T LUAD 100505951 + 100505931 100505971 41 CATCCCAGTTCCTGGAGTGGGTCAACCTGGAGCCCCAGTCC CATCCCAGTTCCTGGAGTGTGTCAACCTGGAGCCCCAGTCC < 41bp 0.376379383884486 0.720113955965151 NA NA prediction 0.440227911930301 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100505951 chrX:100505950 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25490 0 0 0 0 1 DRP2 chrX:100505906 3'AG 100505906 Downstream 45bp 23295 chr20 37576532 37576532 1 + G T SKCM 37576533 + 37576513 37576553 41 CAACAGTTAATGACAGTTCGGACTATCACAGGAAATATCTA CAACAGTTAATGACAGTTCTGACTATCACAGGAAATATCTA < 41bp 0.404618707396956 0.72010976698844 NA NA prediction 0.44021953397688 Functional Gain - FAM83D ENSG00000101447 CDS Human protein_coding chr20:37576533 chr20:37576532 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_25491 0 0 1 0 1 FAM83D chr20:37576519 3'AG 37576519 Downstream 14bp 23296 chr5 153056645 153056645 1 + G T LUSC 153056646 + 153056626 153056666 41 ATTGATATATCTCGCCGGGGGAATGCTGGGGATTGTCTGGC ATTGATATATCTCGCCGGGTGAATGCTGGGGATTGTCTGGC < 41bp 0.3852300277969 0.720106222755394 NA NA prediction 0.440212445510789 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153056646 chr5:153056645 nonsynonymous SNV 0.953 4 20 hm7G_associated_SNPs_25492 0 0 0 0 2 GRIA1 chr5:153056554 3'AG 153056554 Downstream 92bp 23297 chr5 153056645 153056645 1 + G T LUSC 153056646 + 153056626 153056666 41 ATTGATATATCTCGCCGGGGGAATGCTGGGGATTGTCTGGC ATTGATATATCTCGCCGGGTGAATGCTGGGGATTGTCTGGC < 41bp 0.3852300277969 0.720106222755394 NA NA prediction 0.440212445510789 Functional Gain - GRIA1 ENSG00000155511 CDS Human protein_coding chr5:153056646 chr5:153056645 nonsynonymous SNV 0.953 4 20 hm7G_associated_SNPs_25492 0 0 0 0 2 GRIA1 chr5:153056721 5'GT 153056721 Upstream 77bp 23298 chr17 74536618 74536618 1 + G A CESC 74536619 + 74536599 74536639 41 CGTGGATGGGGCAGCTAGGGGCAGCAGCTTGGATGCGGACC CGTGGATGGGGCAGCTAGGAGCAGCAGCTTGGATGCGGACC < 41bp 0.519743418536237 0.739847575916095 NA NA prediction 0.440208314759715 Functional Gain - PRCD ENSG00000214140 CDS Human protein_coding chr17:74536619 chr17:74536618 nonsynonymous SNV 0.019 1 20 hm7G_associated_SNPs_25493 0 0 0 0 2 PRCD chr17:74536587 3'AG 74536587 Downstream 32bp 23299 chr17 74536618 74536618 1 + G A CESC 74536619 + 74536599 74536639 41 CGTGGATGGGGCAGCTAGGGGCAGCAGCTTGGATGCGGACC CGTGGATGGGGCAGCTAGGAGCAGCAGCTTGGATGCGGACC < 41bp 0.519743418536237 0.739847575916095 NA NA prediction 0.440208314759715 Functional Gain - PRCD ENSG00000214140 CDS Human protein_coding chr17:74536619 chr17:74536618 nonsynonymous SNV 0.019 1 20 hm7G_associated_SNPs_25493 0 0 0 0 2 PRCD chr17:74536655 5'GT 74536655 Upstream 38bp 23300 chr19 10404591 10404591 1 + G A UCEC 10404592 + 10404572 10404612 41 CCAACCCTCGGGGCTCTGCGGCCAAAAATGTGGCCGTCACG CCAACCCTCGGGGCTCTGCAGCCAAAAATGTGGCCGTCACG < 41bp 0.515414291131205 0.735516823313186 NA NA prediction 0.440205064363963 Functional Gain - ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10404592 chr19:10404591 synonymous SNV . 0 20 hm7G_associated_SNPs_25494 0 0 1 0 1 ICAM5 chr19:10404619 5'GT 10404619 Upstream 29bp 23301 chr14 62187273 62187273 1 + G T SARC 62187274 + 62187254 62187294 41 ATCAGCTATTTGCGTGTGAGGAAACTTCTGGATGCTGGTGA ATCAGCTATTTGCGTGTGATGAAACTTCTGGATGCTGGTGA < 41bp 0.39175145899458 0.720099547128272 NA NA prediction 0.440199094256544 Functional Gain - HIF1A ENSG00000100644 CDS Human protein_coding chr14:62187274 chr14:62187273 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_25495 0 0 1 0 1 HIF1A chr14:62187290 5'GT 62187290 Upstream 18bp 23302 chr9 140146220 140146220 1 + G A rs199944835 140146221 + 140146201 140146241 41 CTGTGCTGTTGTTGGGCCCGGAGCCGGGGATGGCCTGGGAT CTGTGCTGTTGTTGGGCCCAGAGCCGGGGATGGCCTGGGAT < 41bp 0.502043689967396 0.722135995538905 NA NA prediction 0.440184611143018 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140146221 chr9:140146220 synonymous SNV . 0 20 hm7G_associated_SNPs_25496 0 0 0 0 1 STPG3 chr9:140146190 3'AG 140146190 Downstream 31bp 23303 chr11 88911878 88911878 1 + G T UCEC 88911879 + 88911859 88911899 41 TTGCACAGATGAGTACATGGGAGGTCAGCACCCCACAAATC TTGCACAGATGAGTACATGTGAGGTCAGCACCCCACAAATC < 41bp 0.401712419079566 0.720063458233729 NA NA prediction 0.440126916467457 Functional Gain - TYR ENSG00000077498 CDS Human protein_coding chr11:88911879 chr11:88911878 stopgain 0.995 1 20 hm7G_associated_SNPs_25504 0 0 0 0 1 TYR chr11:88911940 5'GT 88911940 Upstream 63bp 23304 chr7 150500529 150500529 1 + G T COAD 150500530 + 150500510 150500550 41 CCTTCATTTACGAGAAACGGGGTGGTACATACTGGGTAAGT CCTTCATTTACGAGAAACGTGGTGGTACATACTGGGTAAGT < 41bp 0.677160471929324 0.897215368372471 NA NA prediction 0.440109792886292 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150500530 chr7:150500529 synonymous SNV . 0 20 hm7G_associated_SNPs_25505 0 0 0 0 2 TMEM176A chr7:150500488 3'AG 150500488 Downstream 42bp 23305 chr7 150500529 150500529 1 + G T COAD 150500530 + 150500510 150500550 41 CCTTCATTTACGAGAAACGGGGTGGTACATACTGGGTAAGT CCTTCATTTACGAGAAACGTGGTGGTACATACTGGGTAAGT < 41bp 0.677160471929324 0.897215368372471 NA NA prediction 0.440109792886292 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150500530 chr7:150500529 synonymous SNV . 0 20 hm7G_associated_SNPs_25505 0 0 0 0 2 TMEM176A chr7:150500544 5'GT 150500544 Upstream 16bp 23306 chr19 15784425 15784425 1 + G A SKCM 15784426 + 15784406 15784446 41 CTGCTGGTTGTGGGCTCCTGGCTACTCGCCCGCATCCTGGC CTGCTGGTTGTGGGCTCCTAGCTACTCGCCCGCATCCTGGC < 41bp 0.529281704135376 0.749313289996168 NA NA prediction 0.440063171721583 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15784426 chr19:15784425 stopgain 0.015 0 20 hm7G_associated_SNPs_25509 0 0 1 0 1 CYP4F12 chr19:15784339 3'AG 15784339 Downstream 87bp 23307 chr3 44609848 44609848 1 + G T UCEC 44609849 + 44609829 44609869 41 GACTACACTCAGAAGAAATGGAAAAGTCTCACACTCAGTCA GACTACACTCAGAAGAAATTGAAAAGTCTCACACTCAGTCA < 41bp 0.37821843312634 0.720024749948706 NA NA prediction 0.440049499897411 Functional Gain - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44609849 chr3:44609848 nonsynonymous SNV 0.012 1 20 hm7G_associated_SNPs_25511 0 0 0 0 2 ZKSCAN7 chr3:44609799 3'AG 44609799 Downstream 50bp 23308 chr3 44609848 44609848 1 + G T UCEC 44609849 + 44609829 44609869 41 GACTACACTCAGAAGAAATGGAAAAGTCTCACACTCAGTCA GACTACACTCAGAAGAAATTGAAAAGTCTCACACTCAGTCA < 41bp 0.37821843312634 0.720024749948706 NA NA prediction 0.440049499897411 Functional Gain - ZKSCAN7 ENSG00000196345;ENSG00000273303 CDS Human other chr3:44609849 chr3:44609848 nonsynonymous SNV 0.012 1 20 hm7G_associated_SNPs_25511 0 0 0 0 2 ZKSCAN7 chr3:44609925 5'GT 44609925 Upstream 78bp 23309 chr8 145096226 145096226 1 + G A SKCM 145096227 + 145096207 145096247 41 ATCTTCCCAGAGCGCGTACGGCTCTACGGCTTCACTGTCTC ATCTTCCCAGAGCGCGTACAGCTCTACGGCTTCACTGTCTC < 41bp 0.514053257209455 0.734073505594645 NA NA prediction 0.44004049677038 Functional Gain - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145096227 chr8:145096226 nonsynonymous SNV 0.328 3 20 hm7G_associated_SNPs_25513 0 0 0 0 1 SPATC1 chr8:145096272 5'GT 145096272 Upstream 47bp 23310 chr16 1550652 1550652 1 + G T SARC 1550653 + 1550633 1550673 41 TGGGCATGATCGTGGCAGAGGTCGTTAGTGCCCGGATCCAC TGGGCATGATCGTGGCAGATGTCGTTAGTGCCCGGATCCAC < 41bp 0.373130489624446 0.7199886518294 NA NA prediction 0.4399773036588 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1550653 chr16:1550652 nonsynonymous SNV 0.004 4 20 hm7G_associated_SNPs_25515 0 0 0 0 1 TELO2 chr16:1550564 3'AG 1550564 Downstream 89bp 23311 chr11 61111398 61111398 1 + G A PRAD 61111399 + 61111379 61111419 41 CTGGGCGGAAGCGGAGCCGGGTAGCCCCTGCCGAGCCCCAG CTGGGCGGAAGCGGAGCCGAGTAGCCCCTGCCGAGCCCCAG < 41bp 0.496522218554923 0.719978686530375 NA NA prediction 0.43995737306075 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61111399 chr11:61111398 synonymous SNV . 0 20 hm7G_associated_SNPs_25517 0 0 1 0 2 TKFC chr11:61111328 3'AG 61111328 Downstream 71bp 23312 chr11 61111398 61111398 1 + G A PRAD 61111399 + 61111379 61111419 41 CTGGGCGGAAGCGGAGCCGGGTAGCCCCTGCCGAGCCCCAG CTGGGCGGAAGCGGAGCCGAGTAGCCCCTGCCGAGCCCCAG < 41bp 0.496522218554923 0.719978686530375 NA NA prediction 0.43995737306075 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61111399 chr11:61111398 synonymous SNV . 0 20 hm7G_associated_SNPs_25517 0 0 1 0 2 TKFC chr11:61111447 5'GT 61111447 Upstream 50bp 23313 chr17 48619290 48619290 1 + G A rs112657244 48619291 + 48619271 48619311 41 AGATGCGCACCGGCTCGCCGGCGCTGGGCCTGGCAGGCGGG AGATGCGCACCGGCTCGCCAGCGCTGGGCCTGGCAGGCGGG < 41bp 0.532726840117131 0.752704463512853 NA NA prediction 0.439955246791445 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48619291 chr17:48619290 synonymous SNV . 0 20 hm7G_associated_SNPs_25518 0 0 0 0 1 EPN3 chr17:48619205 3'AG 48619205 Downstream 86bp 23314 chr11 561835 561835 1 + G T LUAD 561836 + 561816 561856 41 CATCCAGCGTGTGGTCTGTGGGGTCTCAGAGCAGACCACCT CATCCAGCGTGTGGTCTGTTGGGTCTCAGAGCAGACCACCT < 41bp 0.684749858555129 0.90472506491315 NA NA prediction 0.439950412716043 Functional Gain - RASSF7 ENSG00000099849 CDS Human protein_coding chr11:561836 chr11:561835 nonsynonymous SNV 0.937 4 20 hm7G_associated_SNPs_25519 0 0 1 0 2 RASSF7 chr11:561762 3'AG 561762 Downstream 74bp 23315 chr11 561835 561835 1 + G T LUAD 561836 + 561816 561856 41 CATCCAGCGTGTGGTCTGTGGGGTCTCAGAGCAGACCACCT CATCCAGCGTGTGGTCTGTTGGGTCTCAGAGCAGACCACCT < 41bp 0.684749858555129 0.90472506491315 NA NA prediction 0.439950412716043 Functional Gain - RASSF7 ENSG00000099849 CDS Human protein_coding chr11:561836 chr11:561835 nonsynonymous SNV 0.937 4 20 hm7G_associated_SNPs_25519 0 0 1 0 2 RASSF7 chr11:561892 5'GT 561892 Upstream 58bp 23316 chr19 18775140 18775140 1 + G A SKCM 18775141 + 18775121 18775161 41 ACAGCACCAGCCTCCTGCAGGGCCTGGCCACCCTCCGCGCT ACAGCACCAGCCTCCTGCAAGGCCTGGCCACCCTCCGCGCT < 41bp 0.544203793203827 0.764175379422046 NA NA prediction 0.439943172436438 Functional Gain - KLHL26 ENSG00000167487 CDS Human protein_coding chr19:18775141 chr19:18775140 synonymous SNV . 0 20 hm7G_associated_SNPs_25521 0 0 0 0 1 KLHL26 chr19:18775071 3'AG 18775071 Downstream 70bp 23317 chr1 95357867 95357867 1 + G T UCEC 95357868 + 95357848 95357888 41 GTGTTTCACTGTTTTTGGAGGACTCATGGCTTTTAACTACA GTGTTTCACTGTTTTTGGATGACTCATGGCTTTTAACTACA < 41bp 0.391491524421574 0.719967823525765 NA NA prediction 0.43993564705153 Functional Gain - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95357868 chr1:95357867 stopgain 1.000 1 20 hm7G_associated_SNPs_25522 0 0 0 0 1 SLC44A3 chr1:95357837 3'AG 95357837 Downstream 31bp 23318 chr1 151139634 151139634 1 + G T UCEC 151139635 + 151139615 151139655 41 GCAAGAAGCAGCCGGGAAAGGAAAGAAAGCAGAATCCAAAA GCAAGAAGCAGCCGGGAAATGAAAGAAAGCAGAATCCAAAA < 41bp 0.678450475117674 0.89841790187787 NA NA prediction 0.439934853520392 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151139635 chr1:151139634 nonsynonymous SNV 0.119 0 20 hm7G_associated_SNPs_25523 0 0 1 0 2 SCNM1;TNFAIP8L2-SCNM1 chr1:151139597 3'AG 151139597 Downstream 38bp 23319 chr1 151139634 151139634 1 + G T UCEC 151139635 + 151139615 151139655 41 GCAAGAAGCAGCCGGGAAAGGAAAGAAAGCAGAATCCAAAA GCAAGAAGCAGCCGGGAAATGAAAGAAAGCAGAATCCAAAA < 41bp 0.678450475117674 0.89841790187787 NA NA prediction 0.439934853520392 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151139635 chr1:151139634 nonsynonymous SNV 0.119 0 20 hm7G_associated_SNPs_25523 0 0 1 0 2 SCNM1;TNFAIP8L2-SCNM1 chr1:151139694 5'GT 151139694 Upstream 61bp 23320 chr2 219248982 219248982 1 + G T COAD 219248983 + 219248963 219249003 41 CAGGGCACCTTCAGCCTGCGGAAGCTATGGGCCTTCACGGG CAGGGCACCTTCAGCCTGCTGAAGCTATGGGCCTTCACGGG < 41bp 0.433811088224547 0.719964419725152 NA NA prediction 0.439928839450304 Functional Gain - SLC11A1 ENSG00000018280 CDS Human protein_coding chr2:219248983 chr2:219248982 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_25524 0 0 0 0 1 SLC11A1 chr2:219248966 3'AG 219248966 Downstream 17bp 23321 chr6 20781395 20781395 1 + G T SKCM 20781396 + 20781376 20781416 41 GTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGA GTCACTCTGTGAGACTGCTTGGTCAGAAAAAGGATAATGGA < 41bp 0.427840370827752 0.719957161568966 NA NA prediction 0.439914323137932 Functional Gain - CDKAL1 ENSG00000145996 CDS Human protein_coding chr6:20781396 chr6:20781395 synonymous SNV . 0 20 hm7G_associated_SNPs_25525 0 0 1 0 1 CDKAL1 chr6:20781376 3'AG 20781376 Downstream 20bp 23322 chr17 78155422 78155422 1 + G A rs115582620 78155423 + 78155403 78155443 41 GAGGTGCTGCACAGCCCCCGGCTCACCAACAGCGCCATGCG GAGGTGCTGCACAGCCCCCAGCTCACCAACAGCGCCATGCG < 41bp 0.497668360795994 0.71994553560052 NA NA prediction 0.43989107120104 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78155423 chr17:78155422 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_25526 1 0 0 0 1 CARD14 chr17:78155448 5'GT 78155448 Upstream 27bp 23323 chr15 73996300 73996300 1 + G A UCEC 73996301 + 73996281 73996321 41 ACCTGCTTCGTGAGCATCCGGGATTTCGGCAGCGCTGCCGT ACCTGCTTCGTGAGCATCCAGGATTTCGGCAGCGCTGCCGT < 41bp 0.514876904296693 0.7348181709136 NA NA prediction 0.439882533233813 Functional Gain - CD276 ENSG00000103855 CDS Human protein_coding chr15:73996301 chr15:73996300 nonsynonymous SNV 0.925 0 20 hm7G_associated_SNPs_25527 0 0 0 0 1 CD276 chr15:73996338 5'GT 73996338 Upstream 39bp 23324 chr12 50025223 50025223 1 + G T STAD 50025224 + 50025204 50025244 41 CCCACCCTTTCCTCCGATGGGGCTACCCCCCATGAGTCAGA CCCACCCTTTCCTCCGATGTGGCTACCCCCCATGAGTCAGA < 41bp 0.366090962188162 0.719936632330123 NA NA prediction 0.439873264660246 Functional Gain - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50025224 chr12:50025223 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25528 0 0 0 0 1 PRPF40B chr12:50025184 3'AG 50025184 Downstream 40bp 23325 chr1 247588824 247588824 1 + G T UCEC 247588825 + 247588805 247588845 41 TGCCCAAGGAGGAAGAGGAGGAGGAAAAGGAAGGCCGACAC TGCCCAAGGAGGAAGAGGATGAGGAAAAGGAAGGCCGACAC < 41bp 0.67094677216536 0.890880413818445 NA NA prediction 0.43986728330617 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247588825 chr1:247588824 nonsynonymous SNV 0.011 1 20 hm7G_associated_SNPs_25529 0 0 0 0 1 NLRP3 chr1:247588901 5'GT 247588901 Upstream 78bp 23326 chr16 334698 334698 1 + G A rs367684102 334699 + 334679 334719 41 ATTGCCGAGTGGCTGCGACGGCGGGTGGGGCCCAGTGCCAT ATTGCCGAGTGGCTGCGACAGCGGGTGGGGCCCAGTGCCAT < 41bp 0.525766775013433 0.745679669903312 NA NA prediction 0.43982578977976 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334699 chr16:334698 nonsynonymous SNV 0.672 1 20 hm7G_associated_SNPs_25532 0 0 0 0 2 PDIA2 chr16:334659 3'AG 334659 Downstream 40bp 23327 chr16 334698 334698 1 + G A rs367684102 334699 + 334679 334719 41 ATTGCCGAGTGGCTGCGACGGCGGGTGGGGCCCAGTGCCAT ATTGCCGAGTGGCTGCGACAGCGGGTGGGGCCCAGTGCCAT < 41bp 0.525766775013433 0.745679669903312 NA NA prediction 0.43982578977976 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334699 chr16:334698 nonsynonymous SNV 0.672 1 20 hm7G_associated_SNPs_25532 0 0 0 0 2 PDIA2 chr16:334792 5'GT 334792 Upstream 95bp 23328 chr7 76069923 76069923 1 + G T UCEC 76069924 + 76069904 76069944 41 TCTGCTTCCCGTAACCGCAGGCATGGTATGTCACAGAATGG TCTGCTTCCCGTAACCGCATGCATGGTATGTCACAGAATGG < 41bp 0.67716730343397 0.897079306651516 NA NA prediction 0.439824006435092 Functional Gain - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76069924 chr7:76069923 nonsynonymous SNV 0.901 2 20 hm7G_associated_SNPs_25533 0 0 0 0 1 ZP3 chr7:76069928 5'GT 76069928 Upstream 6bp 23329 chr12 4700406 4700406 1 + G T UCEC 4700407 + 4700387 4700427 41 ACCCTAGCATTAAAACCCAGGATCCCAAGGCAGAGGAGAAG ACCCTAGCATTAAAACCCATGATCCCAAGGCAGAGGAGAAG < 41bp 0.680239458222841 0.90015142997076 NA NA prediction 0.439823943495837 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4700407 chr12:4700406 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_25534 0 0 0 0 2 DYRK4 chr12:4700326 3'AG 4700326 Downstream 81bp 23330 chr12 4700406 4700406 1 + G T UCEC 4700407 + 4700387 4700427 41 ACCCTAGCATTAAAACCCAGGATCCCAAGGCAGAGGAGAAG ACCCTAGCATTAAAACCCATGATCCCAAGGCAGAGGAGAAG < 41bp 0.680239458222841 0.90015142997076 NA NA prediction 0.439823943495837 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4700407 chr12:4700406 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_25534 0 0 0 0 2 DYRK4 chr12:4700464 5'GT 4700464 Upstream 59bp 23331 chr12 133196268 133196268 1 + G A LGG 133196269 + 133196249 133196289 41 CTCTTTCTGAGCCCAGGGGGGCAGCGTGTTCAGCATCATCA CTCTTTCTGAGCCCAGGGGAGCAGCGTGTTCAGCATCATCA < 41bp 0.502445017796247 0.72234605891996 NA NA prediction 0.439802082247425 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196269 chr12:133196268 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_25535 0 0 0 0 2 P2RX2 chr12:133196265 3'AG 133196265 Downstream 4bp 23332 chr12 133196268 133196268 1 + G A LGG 133196269 + 133196249 133196289 41 CTCTTTCTGAGCCCAGGGGGGCAGCGTGTTCAGCATCATCA CTCTTTCTGAGCCCAGGGGAGCAGCGTGTTCAGCATCATCA < 41bp 0.502445017796247 0.72234605891996 NA NA prediction 0.439802082247425 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196269 chr12:133196268 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_25535 0 0 0 0 2 P2RX2 chr12:133196336 5'GT 133196336 Upstream 69bp 23333 chr8 22477242 22477242 1 + G A rs7846186 22477243 + 22477223 22477263 41 GAGGGCAGCGGTGGCGCCCGGCAAAGTTGGAGCCCTTGCGG GAGGGCAGCGGTGGCGCCCAGCAAAGTTGGAGCCCTTGCGG < 41bp 0.492208061941092 0.719889106133895 NA NA prediction 0.43977821226779 Functional Gain - CCAR2 ENSG00000158941 UTR3 Human protein_coding chr8:22477243 chr8:22477242 . . 0 20 hm7G_associated_SNPs_25537 0 0 1 0 1 CCAR2 chr8:22477151 3'AG 22477151 Downstream 92bp 23334 chr14 100934379 100934379 1 + G A UCEC 100934380 + 100934360 100934400 41 ATGGAACGCCGTGGACTCCGGGCACTGCCTGCAGACCTACT ATGGAACGCCGTGGACTCCAGGCACTGCCTGCAGACCTACT < 41bp 0.497905759324948 0.719888098721728 NA NA prediction 0.439776197443456 Functional Gain - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100934380 chr14:100934379 nonsynonymous SNV 0.099 3 20 hm7G_associated_SNPs_25538 0 0 0 0 1 WDR25 chr14:100934358 3'AG 100934358 Downstream 22bp 23335 chr19 4357272 4357272 1 + G A COAD 4357273 + 4357253 4357293 41 TACCAGAGCCTGTTCCTGCGGGGCCTGTCCCTGGTGGGCTG TACCAGAGCCTGTTCCTGCAGGGCCTGTCCCTGGTGGGCTG < 41bp 0.495682392690416 0.719877776821926 NA NA prediction 0.439755553643853 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4357273 chr19:4357272 nonsynonymous SNV 0.926 2 20 hm7G_associated_SNPs_25540 0 0 0 0 1 MPND chr19:4357250 3'AG 4357250 Downstream 23bp 23336 chr12 56629400 56629400 1 + G A rs141099382 56629401 + 56629381 56629421 41 CAGAGAAGGACCTGGGCCCGGGGCTGTCAGTGCTCGGAGGC CAGAGAAGGACCTGGGCCCAGGGCTGTCAGTGCTCGGAGGC < 41bp 0.534959331172566 0.754824322729099 NA NA prediction 0.439729983113065 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629401 chr12:56629400 synonymous SNV . 0 20 hm7G_associated_SNPs_25542 0 0 1 0 2 SLC39A5 chr12:56629344 3'AG 56629344 Downstream 57bp 23337 chr12 56629400 56629400 1 + G A rs141099382 56629401 + 56629381 56629421 41 CAGAGAAGGACCTGGGCCCGGGGCTGTCAGTGCTCGGAGGC CAGAGAAGGACCTGGGCCCAGGGCTGTCAGTGCTCGGAGGC < 41bp 0.534959331172566 0.754824322729099 NA NA prediction 0.439729983113065 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629401 chr12:56629400 synonymous SNV . 0 20 hm7G_associated_SNPs_25542 0 0 1 0 2 SLC39A5 chr12:56629484 5'GT 56629484 Upstream 85bp 23338 chr17 78091491 78091491 1 + G T ACC 78091492 + 78091472 78091512 41 GGCAGTGGGTGACGCTGCCGGCCCCCCTGGACACCATCAAC GGCAGTGGGTGACGCTGCCTGCCCCCCTGGACACCATCAAC < 41bp 0.364209526906766 0.719858021680631 NA NA prediction 0.439716043361261 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78091492 chr17:78091491 synonymous SNV . 0 20 hm7G_associated_SNPs_25544 0 0 1 0 2 GAA chr17:78091399 3'AG 78091399 Downstream 93bp 23339 chr17 78091491 78091491 1 + G T ACC 78091492 + 78091472 78091512 41 GGCAGTGGGTGACGCTGCCGGCCCCCCTGGACACCATCAAC GGCAGTGGGTGACGCTGCCTGCCCCCCTGGACACCATCAAC < 41bp 0.364209526906766 0.719858021680631 NA NA prediction 0.439716043361261 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78091492 chr17:78091491 synonymous SNV . 0 20 hm7G_associated_SNPs_25544 0 0 1 0 2 GAA chr17:78091548 5'GT 78091548 Upstream 58bp 23340 chr16 1812389 1812389 1 + G A UCEC 1812390 + 1812370 1812410 41 CAGCGCCGCCGCTTCACGCGGGTGGAGATGGCCCGTGTGCT CAGCGCCGCCGCTTCACGCAGGTGGAGATGGCCCGTGTGCT < 41bp 0.520649425015511 0.740506300872973 NA NA prediction 0.439713751714923 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1812390 chr16:1812389 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_25545 0 0 1 0 2 MAPK8IP3 chr16:1812352 3'AG 1812352 Downstream 38bp 23341 chr16 1812389 1812389 1 + G A UCEC 1812390 + 1812370 1812410 41 CAGCGCCGCCGCTTCACGCGGGTGGAGATGGCCCGTGTGCT CAGCGCCGCCGCTTCACGCAGGTGGAGATGGCCCGTGTGCT < 41bp 0.520649425015511 0.740506300872973 NA NA prediction 0.439713751714923 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1812390 chr16:1812389 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_25545 0 0 1 0 2 MAPK8IP3 chr16:1812482 5'GT 1812482 Upstream 94bp 23342 chr6 123319300 123319300 1 + G T HNSC 123319301 + 123319281 123319321 41 TCCTTTTTGCTGCCAATTGGGATCAGAGCAGGTAAATCCTA TCCTTTTTGCTGCCAATTGTGATCAGAGCAGGTAAATCCTA < 41bp 0.669557180095268 0.889407972870167 NA NA prediction 0.439701585549797 Functional Gain - CLVS2 ENSG00000146352 CDS Human protein_coding chr6:123319301 chr6:123319300 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25546 0 0 0 0 1 CLVS2 chr6:123319311 5'GT 123319311 Upstream 12bp 23343 chr7 158719139 158719139 1 + G T rs11505215 158719140 + 158719120 158719160 41 CTTCCTTGGATGAGAGTGGGGTTCTCAATGTATGGGTGAGT CTTCCTTGGATGAGAGTGGTGTTCTCAATGTATGGGTGAGT < 41bp 0.383516165530827 0.719844416774706 NA NA prediction 0.439688833549412 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158719140 chr7:158719139 synonymous SNV . 0 20 hm7G_associated_SNPs_25548 0 0 1 0 2 WDR60 chr7:158719093 3'AG 158719093 Downstream 47bp 23344 chr7 158719139 158719139 1 + G T rs11505215 158719140 + 158719120 158719160 41 CTTCCTTGGATGAGAGTGGGGTTCTCAATGTATGGGTGAGT CTTCCTTGGATGAGAGTGGTGTTCTCAATGTATGGGTGAGT < 41bp 0.383516165530827 0.719844416774706 NA NA prediction 0.439688833549412 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158719140 chr7:158719139 synonymous SNV . 0 20 hm7G_associated_SNPs_25548 0 0 1 0 2 WDR60 chr7:158719154 5'GT 158719154 Upstream 16bp 23345 chr15 42132848 42132848 1 + G T STAD 42132849 + 42132829 42132869 41 TTTCACTTCAGGATCCACAGGCAGCTCAAGGTGGGCCAGGC TTTCACTTCAGGATCCACATGCAGCTCAAGGTGGGCCAGGC < 41bp 0.658081495493628 0.877918450029587 NA NA prediction 0.439673909071918 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42132849 chr15:42132848 nonsynonymous SNV 0.929 2 20 hm7G_associated_SNPs_25550 0 0 1 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42132858 5'GT 42132858 Upstream 11bp 23346 chr17 36861965 36861965 1 + G T STAD 36861966 + 36861946 36861986 41 CCGCTGGTCTACTGCGATGGGCACGCGTGCAGCGTGGTCGT CCGCTGGTCTACTGCGATGTGCACGCGTGCAGCGTGGTCGT < 41bp 0.672779667922966 0.892616327625918 NA NA prediction 0.439673319405904 Functional Gain - MLLT6 ENSG00000108292 CDS Human other chr17:36861966 chr17:36861965 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25551 0 0 1 0 1 MLLT6 chr17:36861994 5'GT 36861994 Upstream 30bp 23347 chr2 98994214 98994214 1 + G T UCEC 98994215 + 98994195 98994235 41 GATCGCCATGGAGACCAGAGGACTGGCTGACTCCGGGCAGG GATCGCCATGGAGACCAGATGACTGGCTGACTCCGGGCAGG < 41bp 0.376054228480087 0.719829666561373 NA NA prediction 0.439659333122745 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98994215 chr2:98994214 stopgain 0.397 0 20 hm7G_associated_SNPs_25552 0 0 0 0 2 CNGA3 chr2:98994150 3'AG 98994150 Downstream 65bp 23348 chr2 98994214 98994214 1 + G T UCEC 98994215 + 98994195 98994235 41 GATCGCCATGGAGACCAGAGGACTGGCTGACTCCGGGCAGG GATCGCCATGGAGACCAGATGACTGGCTGACTCCGGGCAGG < 41bp 0.376054228480087 0.719829666561373 NA NA prediction 0.439659333122745 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98994215 chr2:98994214 stopgain 0.397 0 20 hm7G_associated_SNPs_25552 0 0 0 0 2 CNGA3 chr2:98994263 5'GT 98994263 Upstream 50bp 23349 chr1 220935022 220935022 1 + G T UCEC 220935023 + 220935003 220935043 41 ATTTGGCCTTGACATTAAAGGCAGAGACTGTGGCAATGAGG ATTTGGCCTTGACATTAAATGCAGAGACTGTGGCAATGAGG < 41bp 0.669506963403653 0.88933300248472 NA NA prediction 0.439652078162135 Functional Gain - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220935023 chr1:220935022 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_25553 0 0 0 0 1 MARC2 chr1:220935000 3'AG 220935000 Downstream 23bp 23350 chr16 24895396 24895396 1 + C T CESC 24895397 + 24895377 24895417 41 CTGGCTGCTGTGATCTACACGGATGCCCTGCAGACGCTGAT CTGGCTGCTGTGATCTACATGGATGCCCTGCAGACGCTGAT < 41bp 0.50434603082686 0.724170774052359 NA NA prediction 0.439649486450998 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24895397 chr16:24895396 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_25554 0 0 0 0 2 SLC5A11 chr16:24895372 3'AG 24895372 Downstream 25bp 23351 chr16 24895396 24895396 1 + C T CESC 24895397 + 24895377 24895417 41 CTGGCTGCTGTGATCTACACGGATGCCCTGCAGACGCTGAT CTGGCTGCTGTGATCTACATGGATGCCCTGCAGACGCTGAT < 41bp 0.50434603082686 0.724170774052359 NA NA prediction 0.439649486450998 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24895397 chr16:24895396 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_25554 0 0 0 0 2 SLC5A11 chr16:24895452 5'GT 24895452 Upstream 57bp 23352 chr1 43890801 43890801 1 + G T LUSC 43890802 + 43890782 43890822 41 AGAATGAACCACCAGGGCAGGCTGCAGCTGAAGAGAAGCAC AGAATGAACCACCAGGGCATGCTGCAGCTGAAGAGAAGCAC < 41bp 0.392532230888936 0.719821103778037 NA NA prediction 0.439642207556074 Functional Gain - SZT2 ENSG00000198198 CDS Human protein_coding chr1:43890802 chr1:43890801 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_25555 0 0 1 0 2 SZT2 chr1:43890784 3'AG 43890784 Downstream 18bp 23353 chr1 43890801 43890801 1 + G T LUSC 43890802 + 43890782 43890822 41 AGAATGAACCACCAGGGCAGGCTGCAGCTGAAGAGAAGCAC AGAATGAACCACCAGGGCATGCTGCAGCTGAAGAGAAGCAC < 41bp 0.392532230888936 0.719821103778037 NA NA prediction 0.439642207556074 Functional Gain - SZT2 ENSG00000198198 CDS Human protein_coding chr1:43890802 chr1:43890801 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_25555 0 0 1 0 2 SZT2 chr1:43890878 5'GT 43890878 Upstream 78bp 23354 chr19 51359528 51359528 1 + G T UCEC 51359529 + 51359509 51359549 41 CATCCTGTCTCGGATTGTGGGAGGCTGGGAGTGCGAGAAGC CATCCTGTCTCGGATTGTGTGAGGCTGGGAGTGCGAGAAGC < 41bp 0.674700476499245 0.894510860401546 NA NA prediction 0.439620767804603 Functional Gain - KLK3 ENSG00000142515 CDS Human other chr19:51359529 chr19:51359528 stopgain 0.009 0 20 hm7G_associated_SNPs_25557 0 0 0 0 1 KLK3 chr19:51359496 3'AG 51359496 Downstream 33bp 23355 chr9 5072599 5072599 1 + G T LUAD 5072600 + 5072580 5072620 41 AAGTTCTTTTAAAAGTTCTGGATAAAGCACACAGAAACTAT AAGTTCTTTTAAAAGTTCTTGATAAAGCACACAGAAACTAT < 41bp 0.392345939229454 0.719801160596312 NA NA prediction 0.439602321192624 Functional Gain - JAK2 ENSG00000096968 CDS Human protein_coding chr9:5072600 chr9:5072599 synonymous SNV . 0 20 hm7G_associated_SNPs_25560 0 0 1 0 1 JAK2 chr9:5072626 5'GT 5072626 Upstream 28bp 23356 chr11 65394881 65394881 1 + G A rs117574905 65394882 + 65394862 65394902 41 CCCCTTGCCCACAGCTGCCGGGCGCTGCTGATGACCGTGGC CCCCTTGCCCACAGCTGCCAGGCGCTGCTGATGACCGTGGC < 41bp 0.504825443623499 0.724625342133642 NA NA prediction 0.439599797020285 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65394882 chr11:65394881 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_25561 0 0 1 0 1 PCNX3 chr11:65394876 3'AG 65394876 Downstream 6bp 23357 chr19 15794476 15794476 1 + G A PRAD 15794477 + 15794457 15794497 41 GACGCTGTCATCCGGGAGCGGCGTCGCACCCTCCCCACTCA GACGCTGTCATCCGGGAGCAGCGTCGCACCCTCCCCACTCA < 41bp 0.508039502395535 0.727824505900376 NA NA prediction 0.439570007009683 Functional Gain - CYP4F12 ENSG00000186204 CDS Human protein_coding chr19:15794477 chr19:15794476 nonsynonymous SNV 0.085 3 20 hm7G_associated_SNPs_25563 0 0 1 0 1 CYP4F12 chr19:15794573 5'GT 15794573 Upstream 98bp 23358 chr4 39747374 39747374 1 + G T UCEC 39747375 + 39747355 39747395 41 TTTCCCCATTTTTTTAGGAGGAAGATACCAACTAGAGATAA TTTCCCCATTTTTTTAGGATGAAGATACCAACTAGAGATAA < 41bp 0.412688785304366 0.719752738501616 NA NA prediction 0.439505477003231 Functional Gain - UBE2K ENSG00000078140 CDS Human protein_coding chr4:39747375 chr4:39747374 stopgain 0.997 1 20 hm7G_associated_SNPs_25566 0 0 1 0 2 UBE2K chr4:39747372 3'AG 39747372 Downstream 3bp 23359 chr4 39747374 39747374 1 + G T UCEC 39747375 + 39747355 39747395 41 TTTCCCCATTTTTTTAGGAGGAAGATACCAACTAGAGATAA TTTCCCCATTTTTTTAGGATGAAGATACCAACTAGAGATAA < 41bp 0.412688785304366 0.719752738501616 NA NA prediction 0.439505477003231 Functional Gain - UBE2K ENSG00000078140 CDS Human protein_coding chr4:39747375 chr4:39747374 stopgain 0.997 1 20 hm7G_associated_SNPs_25566 0 0 1 0 2 UBE2K chr4:39747430 5'GT 39747430 Upstream 57bp 23360 chr11 113235745 113235745 1 + G T LUAD 113235746 + 113235726 113235766 41 GGCCGTGCAGGTGAACGCAGGCATTGCTCTGGGGAAGCTGT GGCCGTGCAGGTGAACGCATGCATTGCTCTGGGGAAGCTGT < 41bp 0.685087274266311 0.904835702184908 NA NA prediction 0.439496855837195 Functional Gain - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113235746 chr11:113235745 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_25568 0 0 1 0 1 TTC12 chr11:113235782 5'GT 113235782 Upstream 38bp 23361 chr3 126154441 126154441 1 + G T COAD 126154442 + 126154422 126154462 41 AGATGCAAAAGATCCTACAGGAGGAGCATCTGCAGCGGGCC AGATGCAAAAGATCCTACATGAGGAGCATCTGCAGCGGGCC < 41bp 0.682536625323349 0.902284644702696 NA NA prediction 0.439496038758693 Functional Gain - CFAP100 ENSG00000163885 CDS Human protein_coding chr3:126154442 chr3:126154441 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_25569 0 0 0 0 2 CFAP100 chr3:126154402 3'AG 126154402 Downstream 40bp 23362 chr3 126154441 126154441 1 + G T COAD 126154442 + 126154422 126154462 41 AGATGCAAAAGATCCTACAGGAGGAGCATCTGCAGCGGGCC AGATGCAAAAGATCCTACATGAGGAGCATCTGCAGCGGGCC < 41bp 0.682536625323349 0.902284644702696 NA NA prediction 0.439496038758693 Functional Gain - CFAP100 ENSG00000163885 CDS Human protein_coding chr3:126154442 chr3:126154441 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_25569 0 0 0 0 2 CFAP100 chr3:126154495 5'GT 126154495 Upstream 55bp 23363 chr19 42791758 42791758 1 + G A LGG 42791759 + 42791739 42791779 41 ATCTTCAGCAAGCGGCACCGGGCCCTGGTCCACCAGCGTCA ATCTTCAGCAAGCGGCACCAGGCCCTGGTCCACCAGCGTCA < 41bp 0.49460811706338 0.719747267002875 NA NA prediction 0.439494534005751 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42791759 chr19:42791758 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25570 0 0 1 0 1 CIC chr19:42791697 3'AG 42791697 Downstream 62bp 23364 chr5 102456114 102456114 1 + G T SARC 102456115 + 102456095 102456135 41 ACACCTCACCCCTGCCTCCGGGATGAAAGGGGGTAACCTAG ACACCTCACCCCTGCCTCCTGGATGAAAGGGGGTAACCTAG < 41bp 0.42901253233489 0.719734220556528 NA NA prediction 0.439468441113057 Functional Gain - PPIP5K2 ENSG00000145725 UTR5 Human protein_coding chr5:102456115 chr5:102456114 . . 0 20 hm7G_associated_SNPs_25573 0 0 1 0 1 PPIP5K2 chr5:102456192 5'GT 102456192 Upstream 79bp 23365 chr17 79973010 79973010 1 + G A HNSC 79973011 + 79972991 79973031 41 CCTCGCTGAAACGGTGCCTGGGACCAGAGCAGAGAACACGC CCTCGCTGAAACGGTGCCTAGGACCAGAGCAGAGAACACGC < 41bp 0.487228655970636 0.719731540050684 NA NA prediction 0.439463080101369 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79973011 chr17:79973010 synonymous SNV . 0 20 hm7G_associated_SNPs_25574 0 0 1 0 1 ASPSCR1 chr17:79972951 3'AG 79972951 Downstream 60bp 23366 chr19 35540274 35540274 1 + G A UCEC 35540275 + 35540255 35540295 41 GCTACTTCTGACAGCCATCGGGGCGGCATCCTGGGCCATTG GCTACTTCTGACAGCCATCAGGGCGGCATCCTGGGCCATTG < 41bp 0.500471174676838 0.720201787518046 NA NA prediction 0.439461225682414 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35540275 chr19:35540274 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_25575 0 0 1 0 2 HPN chr19:35540194 3'AG 35540194 Downstream 81bp 23367 chr19 35540274 35540274 1 + G A UCEC 35540275 + 35540255 35540295 41 GCTACTTCTGACAGCCATCGGGGCGGCATCCTGGGCCATTG GCTACTTCTGACAGCCATCAGGGCGGCATCCTGGGCCATTG < 41bp 0.500471174676838 0.720201787518046 NA NA prediction 0.439461225682414 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35540275 chr19:35540274 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_25575 0 0 1 0 2 HPN chr19:35540295 5'GT 35540295 Upstream 22bp 23368 chrX 153038688 153038688 1 + G T SARC 153038689 + 153038669 153038709 41 ACTACCCATCCTGCAGCCTGGAGCCAGTGTGTCCGGAGGCC ACTACCCATCCTGCAGCCTTGAGCCAGTGTGTCCGGAGGCC < 41bp 0.37404513684828 0.719729426053205 NA NA prediction 0.439458852106409 Functional Gain - PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153038689 chrX:153038688 synonymous SNV . 0 20 hm7G_associated_SNPs_25576 0 0 0 0 1 PLXNB3 chrX:153038685 3'AG 153038685 Downstream 4bp 23369 chr20 21143549 21143549 1 + G T UCEC 21143550 + 21143530 21143570 41 TCAGAAAAATGCAGGAAGAGGAGGAGGAAAGTTGGAGCACC TCAGAAAAATGCAGGAAGATGAGGAGGAAAGTTGGAGCACC < 41bp 0.662272389106831 0.881997427924245 NA NA prediction 0.439450077634829 Functional Gain - KIZ ENSG00000088970 ncRNA_exonic Human other chr20:21143550 chr20:21143549 . 0.969 2 20 hm7G_associated_SNPs_25578 0 0 1 0 1 KIZ chr20:21143491 3'AG 21143491 Downstream 59bp 23370 chr19 55593837 55593837 1 + G A rs144463157 55593838 + 55593818 55593858 41 ACAGATTGTGAACACGTCGGGGGGGCCGGAGTTCGCGAGCA ACAGATTGTGAACACGTCGAGGGGGCCGGAGTTCGCGAGCA < 41bp 0.510763695938629 0.730474427132615 NA NA prediction 0.439421462387973 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55593838 chr19:55593837 nonsynonymous SNV 0.068 4 20 hm7G_associated_SNPs_25579 0 0 1 0 1 EPS8L1 chr19:55593822 3'AG 55593822 Downstream 16bp 23371 chr1 39957919 39957919 1 + G A rs532376246 39957920 + 39957900 39957940 41 CCTGTACCACGCCATGGCTGGCGACGACGACGAGGACGGCG CCTGTACCACGCCATGGCTAGCGACGACGACGAGGACGGCG < 41bp 0.519610151041403 0.73931744757331 NA NA prediction 0.439414593063814 Functional Gain - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39957920 chr1:39957919 nonsynonymous SNV 0.139 0 20 hm7G_associated_SNPs_25581 0 0 0 0 1 BMP8A chr1:39957997 5'GT 39957997 Upstream 79bp 23372 chr1 21889735 21889735 1 + G A SKCM 21889736 + 21889716 21889756 41 CCGGTGCAACACCACCCAGGGGAACGAGGTCACCTCCATCC CCGGTGCAACACCACCCAGAGGAACGAGGTCACCTCCATCC < 41bp 0.519877899473205 0.73958489945232 NA NA prediction 0.439413999958229 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21889736 chr1:21889735 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_25582 0 0 0 0 1 ALPL chr1:21889777 5'GT 21889777 Upstream 43bp 23373 chr8 23152310 23152310 1 + G A rs117222031 23152311 + 23152291 23152331 41 CCCTGACCCGGGAGTTCTCGGTGCTCAAGATCCGGCCCCTC CCCTGACCCGGGAGTTCTCAGTGCTCAAGATCCGGCCCCTC < 41bp 0.512100974442184 0.73179897606606 NA NA prediction 0.439396003247751 Functional Gain - R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23152311 chr8:23152310 synonymous SNV . 0 20 hm7G_associated_SNPs_25583 0 0 1 0 2 R3HCC1 chr8:23152282 3'AG 23152282 Downstream 29bp 23374 chr8 23152310 23152310 1 + G A rs117222031 23152311 + 23152291 23152331 41 CCCTGACCCGGGAGTTCTCGGTGCTCAAGATCCGGCCCCTC CCCTGACCCGGGAGTTCTCAGTGCTCAAGATCCGGCCCCTC < 41bp 0.512100974442184 0.73179897606606 NA NA prediction 0.439396003247751 Functional Gain - R3HCC1 ENSG00000104679 CDS Human protein_coding chr8:23152311 chr8:23152310 synonymous SNV . 0 20 hm7G_associated_SNPs_25583 0 0 1 0 2 R3HCC1 chr8:23152377 5'GT 23152377 Upstream 68bp 23375 chr19 56160838 56160838 1 + G T LUAD 56160839 + 56160819 56160859 41 TCAAGACCCAGCTGCACATGGCTCTGGAGAGGAACTCCTGG TCAAGACCCAGCTGCACATTGCTCTGGAGAGGAACTCCTGG < 41bp 0.68927755400121 0.908974249099135 NA NA prediction 0.439393390195851 Functional Gain - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56160839 chr19:56160838 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_25584 0 0 1 0 1 CCDC106 chr19:56160774 3'AG 56160774 Downstream 65bp 23376 chr4 71275177 71275177 1 + G T GBM 71275178 + 71275158 71275198 41 CACTCTACAGGCCAAGATGGGTTCCACCAAGTCCCCCACCT CACTCTACAGGCCAAGATGTGTTCCACCAAGTCCCCCACCT < 41bp 0.410030157571067 0.719696298593325 NA NA prediction 0.43939259718665 Functional Gain - OPRPN ENSG00000171199 CDS Human protein_coding chr4:71275178 chr4:71275177 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_25585 0 0 0 0 1 OPRPN chr4:71275097 3'AG 71275097 Downstream 81bp 23377 chr16 23672586 23672586 1 + G T LUAD 23672587 + 23672567 23672607 41 GGTTCCTATGTTCATGTTGGGAAGAACTGTGTGATTGTGAG GGTTCCTATGTTCATGTTGTGAAGAACTGTGTGATTGTGAG < 41bp 0.390424707627386 0.719666357365911 NA NA prediction 0.439332714731821 Functional Gain - DCTN5 ENSG00000166847 CDS Human protein_coding chr16:23672587 chr16:23672586 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_25590 0 0 1 0 1 DCTN5 chr16:23672602 5'GT 23672602 Upstream 17bp 23378 chr10 98714744 98714744 1 + G T LUSC 98714745 + 98714725 98714765 41 CAGCCAGTACCGCCCAGACGGACTTCGGAGTGGTGATGGGG CAGCCAGTACCGCCCAGACTGACTTCGGAGTGGTGATGGGG < 41bp 0.399106118095542 0.719665992722813 NA NA prediction 0.439331985445625 Functional Gain - LCOR ENSG00000196233 CDS Human protein_coding chr10:98714745 chr10:98714744 stopgain 1.000 0 20 hm7G_associated_SNPs_25591 0 0 1 0 1 LCOR chr10:98714710 3'AG 98714710 Downstream 35bp 23379 chr15 39874061 39874061 1 + G A SKCM 39874062 + 39874042 39874082 41 GCACCAACAGCTCCACCATGGGGCTGGCCTGGGGACTAGGC GCACCAACAGCTCCACCATAGGGCTGGCCTGGGGACTAGGC < 41bp 0.5102168887666 0.729878721649129 NA NA prediction 0.439323665765058 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39874062 chr15:39874061 nonsynonymous SNV 0.927 2 20 hm7G_associated_SNPs_25592 0 0 1 0 2 THBS1 chr15:39874030 3'AG 39874030 Downstream 32bp 23380 chr15 39874061 39874061 1 + G A SKCM 39874062 + 39874042 39874082 41 GCACCAACAGCTCCACCATGGGGCTGGCCTGGGGACTAGGC GCACCAACAGCTCCACCATAGGGCTGGCCTGGGGACTAGGC < 41bp 0.5102168887666 0.729878721649129 NA NA prediction 0.439323665765058 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39874062 chr15:39874061 nonsynonymous SNV 0.927 2 20 hm7G_associated_SNPs_25592 0 0 1 0 2 THBS1 chr15:39874125 5'GT 39874125 Upstream 65bp 23381 chr21 17199496 17199496 1 + G T UCEC 17199497 + 17199477 17199517 41 AGTTGTTTACATCGCTGGAGGACAGAAATAGAAAATGACAC AGTTGTTTACATCGCTGGATGACAGAAATAGAAAATGACAC < 41bp 0.391708983909145 0.719658351384161 NA NA prediction 0.439316702768322 Functional Gain - USP25 ENSG00000155313 CDS Human protein_coding chr21:17199497 chr21:17199496 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25594 0 0 1 0 1 USP25 chr21:17199522 5'GT 17199522 Upstream 27bp 23382 chr13 113825987 113825987 1 + G T BLCA 113825988 + 113825968 113826008 41 TGCGGTATGACGCGGACGCGGGGGAGAATGACCTGTCACTG TGCGGTATGACGCGGACGCTGGGGAGAATGACCTGTCACTG < 41bp 0.673295144599843 0.892946117279533 NA NA prediction 0.43930194535938 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113825988 chr13:113825987 synonymous SNV . 0 20 hm7G_associated_SNPs_25596 0 0 0 0 1 PROZ chr13:113825908 3'AG 113825908 Downstream 80bp 23383 chr10 71003096 71003096 1 + G A rs202105296 71003097 + 71003077 71003117 41 CGACAGGGAGCTGGACCTCGGCTCTCTCAACCCAGGAAAGC CGACAGGGAGCTGGACCTCAGCTCTCTCAACCCAGGAAAGC < 41bp 0.506730584717401 0.726381034738834 NA NA prediction 0.439300900042867 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71003097 chr10:71003096 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_25597 1 0 0 0 1 HKDC1 chr10:71003121 5'GT 71003121 Upstream 26bp 23384 chr19 7831014 7831014 1 + G T LUSC 7831015 + 7830995 7831035 41 AGGAGCTGACCCAGCTGAAGGCTGCAGTGGGTGAGTTGCCA AGGAGCTGACCCAGCTGAATGCTGCAGTGGGTGAGTTGCCA < 41bp 0.673543627560304 0.893188661751525 NA NA prediction 0.439290068382441 Functional Gain - CLEC4M ENSG00000104938 CDS Human protein_coding chr19:7831015 chr19:7831014 nonsynonymous SNV 0.007 2 20 hm7G_associated_SNPs_25598 0 0 0 0 1 CLEC4M chr19:7831093 5'GT 7831093 Upstream 80bp 23385 chr11 105774677 105774677 1 + G T COAD 105774678 + 105774658 105774698 41 CTGCTGCTCCATGGGGCCAGGGAATTGACATGGAGAGGACA CTGCTGCTCCATGGGGCCATGGAATTGACATGGAGAGGACA < 41bp 0.396376750899363 0.71963353990196 NA NA prediction 0.43926707980392 Functional Gain - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105774678 chr11:105774677 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25599 0 0 0 0 1 GRIA4 chr11:105774707 5'GT 105774707 Upstream 31bp 23386 chr12 125621357 125621357 1 + G T LUAD 125621358 + 125621338 125621378 41 CCGTGACGCCATCCGCATGGGCTTGTCTGCGCGACACGTGC CCGTGACGCCATCCGCATGTGCTTGTCTGCGCGACACGTGC < 41bp 0.360939685088602 0.719633277350659 NA NA prediction 0.439266554701317 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125621358 chr12:125621357 nonsynonymous SNV 0.586 1 20 hm7G_associated_SNPs_25600 0 0 0 0 1 AACS chr12:125621410 5'GT 125621410 Upstream 54bp 23387 chr7 141803131 141803131 1 + G T UCEC 141803132 + 141803112 141803152 41 GTACAAATCCTTTGAAACTGGGCTACATTGAAATCTGGGGA GTACAAATCCTTTGAAACTTGGCTACATTGAAATCTGGGGA < 41bp 0.388297297217927 0.719632782015625 NA NA prediction 0.43926556403125 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141803132 chr7:141803131 synonymous SNV . 0 20 hm7G_associated_SNPs_25601 0 0 0 0 1 MGAM chr7:141803069 3'AG 141803069 Downstream 63bp 23388 chr7 72396949 72396949 1 + G T COAD 72396950 + 72396930 72396970 41 CTGTCCCCTCGCAACTCCAGGATGGTGTGTAGCCCAGTGAC CTGTCCCCTCGCAACTCCATGATGGTGTGTAGCCCAGTGAC < 41bp 0.535090518216795 0.754718378190349 NA NA prediction 0.439255719947108 Functional Gain - POM121 ENSG00000196313 CDS Human protein_coding chr7:72396950 chr7:72396949 nonsynonymous SNV 0.937 1 20 hm7G_associated_SNPs_25602 0 0 0 0 1 POM121 chr7:72397015 5'GT 72397015 Upstream 67bp 23389 chr9 101767260 101767260 1 + G A UCEC 101767261 + 101767241 101767281 41 GCATGCCTGGGGAAGTGGAGGCCAGTGGTGTGGCCCCCGGG GCATGCCTGGGGAAGTGGAAGCCAGTGGTGTGGCCCCCGGG < 41bp 0.519670770095679 0.739287286837115 NA NA prediction 0.43923303348287 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101767261 chr9:101767260 synonymous SNV . 0 20 hm7G_associated_SNPs_25603 0 0 0 0 1 COL15A1 chr9:101767332 5'GT 101767332 Upstream 73bp 23390 chrX 8434016 8434016 1 + G A rs763574545 8434017 + 8433997 8434037 41 GTCAGGAGAGCGAGCTGGAGGAACCACTGAGTCAGGAGAGC GTCAGGAGAGCGAGCTGGAAGAACCACTGAGTCAGGAGAGC < 41bp 0.499935774993875 0.719615018425887 NA NA prediction 0.439230036851773 Functional Gain - VCX3B ENSG00000205642 CDS Human other chrX:8434017 chrX:8434016 synonymous SNV . 0 20 hm7G_associated_SNPs_25604 0 0 0 0 1 VCX3B chrX:8434040 5'GT 8434040 Upstream 25bp 23391 chr10 112266815 112266815 1 + G A CESC 112266816 + 112266796 112266836 41 TCTCCCGACGGACCTCCGAGGCCTGCGCGACCCACCTACAC TCTCCCGACGGACCTCCGAAGCCTGCGCGACCCACCTACAC < 41bp 0.513849184380345 0.733453445120005 NA NA prediction 0.43920852147932 Functional Gain - DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112266816 chr10:112266815 synonymous SNV . 0 20 hm7G_associated_SNPs_25605 0 0 1 0 1 DUSP5 chr10:112266912 5'GT 112266912 Upstream 98bp 23392 chr17 78219974 78219974 1 + G A COAD 78219975 + 78219955 78219995 41 CAGCCGTGAACGCTCAGTCGGGGGTGTGCACCCCGGCGGGG CAGCCGTGAACGCTCAGTCAGGGGTGTGCACCCCGGCGGGG < 41bp 0.535089690688528 0.754692848227769 NA NA prediction 0.439206315078483 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219975 chr17:78219974 synonymous SNV . 0 20 hm7G_associated_SNPs_25606 0 0 1 0 2 SLC26A11 chr17:78219953 3'AG 78219953 Downstream 22bp 23393 chr17 78219974 78219974 1 + G A COAD 78219975 + 78219955 78219995 41 CAGCCGTGAACGCTCAGTCGGGGGTGTGCACCCCGGCGGGG CAGCCGTGAACGCTCAGTCAGGGGTGTGCACCCCGGCGGGG < 41bp 0.535089690688528 0.754692848227769 NA NA prediction 0.439206315078483 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219975 chr17:78219974 synonymous SNV . 0 20 hm7G_associated_SNPs_25606 0 0 1 0 2 SLC26A11 chr17:78220008 5'GT 78220008 Upstream 35bp 23394 chr15 63578791 63578791 1 + G T GBM 63578792 + 63578772 63578812 41 TTTGAAGAGTATAAACCCAGGTGAGACAGCACCCTCTATGC TTTGAAGAGTATAAACCCATGTGAGACAGCACCCTCTATGC < 41bp 0.385983133935004 0.719596062955176 NA NA prediction 0.439192125910352 Functional Gain - APH1B ENSG00000138613 CDS Human protein_coding chr15:63578792 chr15:63578791 nonsynonymous SNV 0.905 2 20 hm7G_associated_SNPs_25608 0 0 0 0 2 APH1B chr15:63578757 3'AG 63578757 Downstream 35bp 23395 chr15 63578791 63578791 1 + G T GBM 63578792 + 63578772 63578812 41 TTTGAAGAGTATAAACCCAGGTGAGACAGCACCCTCTATGC TTTGAAGAGTATAAACCCATGTGAGACAGCACCCTCTATGC < 41bp 0.385983133935004 0.719596062955176 NA NA prediction 0.439192125910352 Functional Gain - APH1B ENSG00000138613 CDS Human protein_coding chr15:63578792 chr15:63578791 nonsynonymous SNV 0.905 2 20 hm7G_associated_SNPs_25608 0 0 0 0 2 APH1B chr15:63578827 5'GT 63578827 Upstream 37bp 23396 chr11 1464830 1464830 1 + G T THCA 1464831 + 1464811 1464851 41 CTGCCAGAGTCTGCTACGGGGCATGATCGAGGTGGACGCCG CTGCCAGAGTCTGCTACGGTGCATGATCGAGGTGGACGCCG < 41bp 0.368331325611699 0.71958258008851 NA NA prediction 0.43916516017702 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1464831 chr11:1464830 nonsynonymous SNV 0.889 3 20 hm7G_associated_SNPs_25611 0 0 1 0 1 BRSK2 chr11:1464865 5'GT 1464865 Upstream 36bp 23397 chr14 95107653 95107653 1 + G T UCEC 95107654 + 95107634 95107674 41 TCAGACCAAGGACCCCAGAGGATGGAGGCCTCTCGGTGGTG TCAGACCAAGGACCCCAGATGATGGAGGCCTCTCGGTGGTG < 41bp 0.415027898896154 0.719563212757829 NA NA prediction 0.439126425515658 Functional Gain - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95107654 chr14:95107653 . . 0 20 hm7G_associated_SNPs_25614 0 0 0 0 1 SERPINA13P chr14:95107638 3'AG 95107638 Downstream 16bp 23398 chr22 50316288 50316288 1 + G A rs138811682 50316289 + 50316269 50316309 41 AGTCCTGCAAGACGTGCTCGGGCCTGACCAACAGAGACTGC AGTCCTGCAAGACGTGCTCAGGCCTGACCAACAGAGACTGC < 41bp 0.495462739836305 0.719549396269315 NA NA prediction 0.43909879253863 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50316289 chr22:50316288 synonymous SNV . 0 20 hm7G_associated_SNPs_25615 0 0 1 0 2 CRELD2 chr22:50316260 3'AG 50316260 Downstream 29bp 23399 chr22 50316288 50316288 1 + G A rs138811682 50316289 + 50316269 50316309 41 AGTCCTGCAAGACGTGCTCGGGCCTGACCAACAGAGACTGC AGTCCTGCAAGACGTGCTCAGGCCTGACCAACAGAGACTGC < 41bp 0.495462739836305 0.719549396269315 NA NA prediction 0.43909879253863 Functional Gain - CRELD2 ENSG00000184164 CDS Human protein_coding chr22:50316289 chr22:50316288 synonymous SNV . 0 20 hm7G_associated_SNPs_25615 0 0 1 0 2 CRELD2 chr22:50316355 5'GT 50316355 Upstream 68bp 23400 chrX 41332755 41332755 1 + G A ESCA 41332756 + 41332736 41332776 41 CCCCGCAGCGGTGGTCCTCGGCCTGCCCAGCGCCTGGGCCG CCCCGCAGCGGTGGTCCTCAGCCTGCCCAGCGCCTGGGCCG < 41bp 0.550446701688518 0.769995166232083 NA NA prediction 0.439096929087131 Functional Gain - NYX ENSG00000188937 CDS Human protein_coding chrX:41332756 chrX:41332755 nonsynonymous SNV 0.142 0 20 hm7G_associated_SNPs_25616 0 0 0 0 1 NYX chrX:41332744 3'AG 41332744 Downstream 12bp 23401 chr22 29837532 29837532 1 + G T GBM 29837533 + 29837513 29837553 41 TTTTTTTCCTTTTCACAGTGGATATGACCTTGGATGCCGAC TTTTTTTCCTTTTCACAGTTGATATGACCTTGGATGCCGAC < 41bp 0.664662677631566 0.884193715453478 NA NA prediction 0.439062075643824 Functional Gain - RFPL1 ENSG00000128250 CDS Human protein_coding chr22:29837533 chr22:29837532 synonymous SNV . 0 20 hm7G_associated_SNPs_25617 0 0 0 0 1 RFPL1 chr22:29837531 3'AG 29837531 Downstream 2bp 23402 chr17 48750349 48750349 1 + G A LUSC 48750350 + 48750330 48750370 41 AGGGCATTAACCTGTCTGGGGGCCAGCGGCAGCGGGTCAGT AGGGCATTAACCTGTCTGGAGGCCAGCGGCAGCGGGTCAGT < 41bp 0.5206267334179 0.74015149427195 NA NA prediction 0.4390495217081 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48750350 chr17:48750349 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_25620 0 0 1 0 1 ABCC3 chr17:48750332 3'AG 48750332 Downstream 18bp 23403 chr22 38021041 38021041 1 + G T LUSC 38021042 + 38021022 38021062 41 GTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATG GTATAAGCAGCTGGTGCGGTGTGAGGAGGTCAACGGTGATG < 41bp 0.373443152112034 0.719520047936112 NA NA prediction 0.439040095872223 Functional Gain - GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021042 chr22:38021041 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_25621 0 0 1 0 2 GGA1 chr22:38020976 3'AG 38020976 Downstream 66bp 23404 chr22 38021041 38021041 1 + G T LUSC 38021042 + 38021022 38021062 41 GTATAAGCAGCTGGTGCGGGGTGAGGAGGTCAACGGTGATG GTATAAGCAGCTGGTGCGGTGTGAGGAGGTCAACGGTGATG < 41bp 0.373443152112034 0.719520047936112 NA NA prediction 0.439040095872223 Functional Gain - GGA1 ENSG00000100083 CDS Human protein_coding chr22:38021042 chr22:38021041 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_25621 0 0 1 0 2 GGA1 chr22:38021083 5'GT 38021083 Upstream 43bp 23405 chr14 103805095 103805095 1 + G T SARC 103805096 + 103805076 103805116 41 AAGAGGAGGATGATGACTGGGGAGAAGATACAACTGAGGAA AAGAGGAGGATGATGACTGTGGAGAAGATACAACTGAGGAA < 41bp 0.677087235221756 0.896603016422107 NA NA prediction 0.439031562400703 Functional Gain - EIF5 ENSG00000100664 CDS Human protein_coding chr14:103805096 chr14:103805095 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_25622 0 0 1 0 1 EIF5 chr14:103805072 3'AG 103805072 Downstream 24bp 23406 chr3 49736957 49736957 1 + G A UCEC 49736958 + 49736938 49736978 41 CCGAGTGCTGACCTGGTGCGGGCACAGAGGTTGCTGGGCTG CCGAGTGCTGACCTGGTGCAGGCACAGAGGTTGCTGGGCTG < 41bp 0.519133493957739 0.738642720653997 NA NA prediction 0.439018453392515 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49736958 chr3:49736957 nonsynonymous SNV 0.965 0 20 hm7G_associated_SNPs_25623 0 0 1 0 1 RNF123 chr3:49737015 5'GT 49737015 Upstream 59bp 23407 chr14 65199150 65199150 1 + G T UCEC 65199151 + 65199131 65199171 41 TCCTTCCCCTTCAGGCCAAGGAAGCCATCTTGGAAATGGAT TCCTTCCCCTTCAGGCCAATGAAGCCATCTTGGAAATGGAT < 41bp 0.375764425949249 0.719507242897118 NA NA prediction 0.439014485794236 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65199151 chr14:65199150 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_25625 0 0 0 0 2 PLEKHG3 chr14:65199145 3'AG 65199145 Downstream 6bp 23408 chr14 65199150 65199150 1 + G T UCEC 65199151 + 65199131 65199171 41 TCCTTCCCCTTCAGGCCAAGGAAGCCATCTTGGAAATGGAT TCCTTCCCCTTCAGGCCAATGAAGCCATCTTGGAAATGGAT < 41bp 0.375764425949249 0.719507242897118 NA NA prediction 0.439014485794236 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65199151 chr14:65199150 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_25625 0 0 0 0 2 PLEKHG3 chr14:65199178 5'GT 65199178 Upstream 29bp 23409 chr12 20523122 20523122 1 + G T LUAD 20523123 + 20523103 20523143 41 CGTGTCCGCCGAGATGTCCGGCTGCAGCAGCAAGTCCCATC CGTGTCCGCCGAGATGTCCTGCTGCAGCAGCAAGTCCCATC < 41bp 0.391701016786894 0.719498138668756 NA NA prediction 0.438996277337512 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20523123 chr12:20523122 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_25628 0 0 0 0 1 PDE3A chr12:20523178 5'GT 20523178 Upstream 57bp 23410 chr7 130008324 130008324 1 + G T COAD 130008325 + 130008305 130008345 41 CCTTCAGCTTTGAGCTCCGGGACACTGGGCAGTATGGCTTC CCTTCAGCTTTGAGCTCCGTGACACTGGGCAGTATGGCTTC < 41bp 0.677352136750225 0.896839757256107 NA NA prediction 0.438975241011764 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130008325 chr7:130008324 nonsynonymous SNV 0.972 1 20 hm7G_associated_SNPs_25629 0 0 0 0 1 CPA5 chr7:130008251 3'AG 130008251 Downstream 74bp 23411 chr6 160469463 160469463 1 + G T SARC 160469464 + 160469444 160469484 41 TATGCCATGGACAACTCAGGGGAACATGTCACGTGGAGGAA TATGCCATGGACAACTCAGTGGAACATGTCACGTGGAGGAA < 41bp 0.372469228552402 0.719484322852772 NA NA prediction 0.438968645705543 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160469464 chr6:160469463 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_25630 0 0 1 0 1 IGF2R chr6:160469407 3'AG 160469407 Downstream 57bp 23412 chr5 74880597 74880597 1 + G T GBM 74880598 + 74880578 74880618 41 TTTCTAGGTTTCTGGAATAGGAAAAGTTACAGAGAAAATGT TTTCTAGGTTTCTGGAATATGAAAAGTTACAGAGAAAATGT < 41bp 0.4260547136819 0.719481627285184 NA NA prediction 0.438963254570369 Functional Gain - POLK ENSG00000122008 CDS Human protein_coding chr5:74880598 chr5:74880597 stopgain 1.000 1 20 hm7G_associated_SNPs_25631 0 0 0 0 1 POLK chr5:74880585 3'AG 74880585 Downstream 13bp 23413 chr6 56857226 56857226 1 + G T OV 56857227 + 56857207 56857247 41 CTGGTGAAAGCTCCAGTGAGGATGAAGAGCCTTTAGCAGAA CTGGTGAAAGCTCCAGTGATGATGAAGAGCCTTTAGCAGAA < 41bp 0.668103113617116 0.887583223895187 NA NA prediction 0.438960220556142 Functional Gain - BEND6 ENSG00000151917 CDS Human protein_coding chr6:56857227 chr6:56857226 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_25632 0 0 0 0 1 BEND6 chr6:56857176 3'AG 56857176 Downstream 51bp 23414 chr17 18396112 18396112 1 + G T HNSC 18396113 + 18396093 18396133 41 ACCCAGATCAACAACTCTTGGGGGTCTGAGGAGCGAAGTCT ACCCAGATCAACAACTCTTTGGGGTCTGAGGAGCGAAGTCT < 41bp 0.688082675762862 0.907555109221726 NA NA prediction 0.438944866917728 Functional Gain - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18396113 chr17:18396112 nonsynonymous SNV 0.964 4 20 hm7G_associated_SNPs_25633 0 0 0 0 1 LGALS9C chr17:18396173 5'GT 18396173 Upstream 62bp 23415 chr1 21902306 21902306 1 + G A UCEC 21902307 + 21902287 21902327 41 GGAGATGGACCGGGCCATCGGGCAGGCAGGCAGCTTGACCT GGAGATGGACCGGGCCATCAGGCAGGCAGGCAGCTTGACCT < 41bp 0.515925004319283 0.735389815017027 NA NA prediction 0.438929621395487 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21902307 chr1:21902306 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_25635 0 0 0 0 1 ALPL chr1:21902226 3'AG 21902226 Downstream 81bp 23416 chr1 150529140 150529140 1 + G A HNSC 150529141 + 150529121 150529161 41 CCATCATCAATGGGAACTGGGCTGTGGATCCCCCTGGGTCC CCATCATCAATGGGAACTGAGCTGTGGATCCCCCTGGGTCC < 41bp 0.532498315663837 0.751955145210912 NA NA prediction 0.438913659094151 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150529141 chr1:150529140 stopgain 1.000 0 20 hm7G_associated_SNPs_25637 0 0 1 0 1 ADAMTSL4 chr1:150529097 3'AG 150529097 Downstream 44bp 23417 chr12 107349810 107349810 1 + G T rs11837205 107349811 + 107349791 107349831 41 CGGCCCGCTCACTCCGCCCGGCCCCAGCCCTAGCGCTGGCC CGGCCCGCTCACTCCGCCCTGCCCCAGCCCTAGCGCTGGCC < 41bp 0.589060547040553 0.808505318489397 NA NA prediction 0.438889542897688 Functional Gain - TMEM263 ENSG00000151135 UTR5 Human protein_coding chr12:107349811 chr12:107349810 . . 0 20 hm7G_associated_SNPs_25640 0 0 1 0 1 TMEM263 chr12:107349843 5'GT 107349843 Upstream 34bp 23418 chrX 100093317 100093317 1 + G T UCEC 100093318 + 100093298 100093338 41 AGAGTATCCTGATTTTAAAGGAACAAATACAGAAATCCACT AGAGTATCCTGATTTTAAATGAACAAATACAGAAATCCACT < 41bp 0.670262883907741 0.889704329308305 NA NA prediction 0.438882890801127 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100093318 chrX:100093317 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25641 0 0 1 0 2 CSTF2 chrX:100093228 3'AG 100093228 Downstream 90bp 23419 chrX 100093317 100093317 1 + G T UCEC 100093318 + 100093298 100093338 41 AGAGTATCCTGATTTTAAAGGAACAAATACAGAAATCCACT AGAGTATCCTGATTTTAAATGAACAAATACAGAAATCCACT < 41bp 0.670262883907741 0.889704329308305 NA NA prediction 0.438882890801127 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100093318 chrX:100093317 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25641 0 0 1 0 2 CSTF2 chrX:100093353 5'GT 100093353 Upstream 37bp 23420 chr12 57860079 57860079 1 + G A SKCM 57860080 + 57860060 57860100 41 AGTTCGTGTGCCACTGGGGGGGCTGCTCCAGGGAGCTGAGG AGTTCGTGTGCCACTGGGGAGGCTGCTCCAGGGAGCTGAGG < 41bp 0.52515197445401 0.744581917352186 NA NA prediction 0.438859885796352 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57860080 chr12:57860079 synonymous SNV . 0 20 hm7G_associated_SNPs_25642 0 0 0 0 2 GLI1 chr12:57860023 3'AG 57860023 Downstream 57bp 23421 chr12 57860079 57860079 1 + G A SKCM 57860080 + 57860060 57860100 41 AGTTCGTGTGCCACTGGGGGGGCTGCTCCAGGGAGCTGAGG AGTTCGTGTGCCACTGGGGAGGCTGCTCCAGGGAGCTGAGG < 41bp 0.52515197445401 0.744581917352186 NA NA prediction 0.438859885796352 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57860080 chr12:57860079 synonymous SNV . 0 20 hm7G_associated_SNPs_25642 0 0 0 0 2 GLI1 chr12:57860172 5'GT 57860172 Upstream 94bp 23422 chr1 202152745 202152745 1 + G T CESC 202152746 + 202152726 202152766 41 TCAGGCTGACCCAGCTGGAGGGAGAGCCTCATTCTGACTAC TCAGGCTGACCCAGCTGGATGGAGAGCCTCATTCTGACTAC < 41bp 0.384044971353882 0.719418574585547 NA NA prediction 0.438837149171094 Functional Gain - PTPRVP ENSG00000243323 ncRNA_exonic Human processed_transcript chr1:202152746 chr1:202152745 . . 0 20 hm7G_associated_SNPs_25644 0 0 0 0 1 PTPRVP chr1:202152787 5'GT 202152787 Upstream 43bp 23423 chr3 129247841 129247841 1 + G T UCEC 129247842 + 129247822 129247862 41 TGACCTCTTCATGGTCCTAGGTGGCTTCACCAGCACCCTCT TGACCTCTTCATGGTCCTATGTGGCTTCACCAGCACCCTCT < 41bp 0.402068091354173 0.719418381889988 NA NA prediction 0.438836763779976 Functional Gain - RHO ENSG00000163914 CDS Human protein_coding chr3:129247842 chr3:129247841 nonsynonymous SNV 0.989 0 20 hm7G_associated_SNPs_25645 0 0 0 0 1 RHO chr3:129247937 5'GT 129247937 Upstream 97bp 23424 chr10 118368594 118368594 1 + G T ESCA 118368595 + 118368575 118368615 41 TGTAGCGAAGACACAGTGCGGGAAGACACGCTGCTCACCCT TGTAGCGAAGACACAGTGCTGGAAGACACGCTGCTCACCCT < 41bp 0.670427990285112 0.88983102714392 NA NA prediction 0.438806073717616 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118368595 chr10:118368594 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_25646 0 0 0 0 1 PNLIPRP1 chr10:118368565 3'AG 118368565 Downstream 30bp 23425 chr20 61957493 61957493 1 + G A ACC 61957494 + 61957474 61957514 41 TGGCCTGCCTGGACCCCCTGGCCCCAGGGTAGGCACCGACC TGGCCTGCCTGGACCCCCTAGCCCCAGGGTAGGCACCGACC < 41bp 0.528623197885015 0.748024405579216 NA NA prediction 0.438802415388403 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61957494 chr20:61957493 nonsynonymous SNV 0.073 4 20 hm7G_associated_SNPs_25647 0 0 0 0 1 COL20A1 chr20:61957448 3'AG 61957448 Downstream 46bp 23426 chr15 75320628 75320628 1 + G T rs200954543 75320629 + 75320609 75320649 41 ATAGAGCCCAGGCCTGGCAGGCTCCCAGAACTTGAAGCCAC ATAGAGCCCAGGCCTGGCATGCTCCCAGAACTTGAAGCCAC < 41bp 0.604485844126317 0.823886268150555 NA NA prediction 0.438800848048476 Functional Gain - PPCDC ENSG00000138621 UTR5 Human protein_coding chr15:75320629 chr15:75320628 . . 0 20 hm7G_associated_SNPs_25648 0 0 1 0 1 PPCDC chr15:75320588 3'AG 75320588 Downstream 41bp 23427 chr17 32597371 32597371 1 + G T LUAD 32597372 + 32597352 32597392 41 GCTGCTTTCAGCCCCCAGGGGCTTGCTCAGCCAGGTAAGGT GCTGCTTTCAGCCCCCAGGTGCTTGCTCAGCCAGGTAAGGT < 41bp 0.663242766589898 0.882626318317882 NA NA prediction 0.438767103455969 Functional Gain - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32597372 chr17:32597371 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_25650 0 0 0 0 1 CCL7 chr17:32597385 5'GT 32597385 Upstream 15bp 23428 chr19 7976024 7976024 1 + G A COAD 7976025 + 7976005 7976045 41 AGCCAAGACGCGGAGCGCCGGCTGTGCCGCCTACATGGCAG AGCCAAGACGCGGAGCGCCAGCTGTGCCGCCTACATGGCAG < 41bp 0.492449418758937 0.719383430257557 NA NA prediction 0.438766860515114 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976025 chr19:7976024 nonsynonymous SNV 0.048 4 20 hm7G_associated_SNPs_25651 0 0 0 0 1 MAP2K7 chr19:7976044 5'GT 7976044 Upstream 21bp 23429 chr1 3541660 3541660 1 + G T COAD 3541661 + 3541641 3541681 41 TGCAACTGCGGGACTCGGTGGACTCGGCCGGTACGAGCCCC TGCAACTGCGGGACTCGGTTGACTCGGCCGGTACGAGCCCC < 41bp 0.676090624568926 0.895469659331484 NA NA prediction 0.438758069525117 Functional Gain - TPRG1L ENSG00000158109 CDS Human protein_coding chr1:3541661 chr1:3541660 synonymous SNV . 0 20 hm7G_associated_SNPs_25653 0 0 1 0 1 TPRG1L chr1:3541708 5'GT 3541708 Upstream 49bp 23430 chr3 128971754 128971754 1 + G T PRAD 128971755 + 128971735 128971775 41 TGTGCTACTTGACCATCAAGGAGATGTCTTGCATTGCAGAG TGTGCTACTTGACCATCAATGAGATGTCTTGCATTGCAGAG < 41bp 0.529204200703462 0.748575630476485 NA NA prediction 0.438742859546046 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128971755 chr3:128971754 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25654 0 0 1 0 1 COPG1 chr3:128971719 3'AG 128971719 Downstream 36bp 23431 chr6 167711466 167711466 1 + G A rs34231081 167711467 + 167711447 167711487 41 GAGCAGCTCACGTCCTGTGGGGCCAGTGACTGCCTGATGGC GAGCAGCTCACGTCCTGTGAGGCCAGTGACTGCCTGATGGC < 41bp 0.498396799388939 0.719352755970692 NA NA prediction 0.438705511941385 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167711467 chr6:167711466 nonsynonymous SNV 0.931 4 20 hm7G_associated_SNPs_25658 0 0 1 0 2 UNC93A chr6:167711433 3'AG 167711433 Downstream 34bp 23432 chr6 167711466 167711466 1 + G A rs34231081 167711467 + 167711447 167711487 41 GAGCAGCTCACGTCCTGTGGGGCCAGTGACTGCCTGATGGC GAGCAGCTCACGTCCTGTGAGGCCAGTGACTGCCTGATGGC < 41bp 0.498396799388939 0.719352755970692 NA NA prediction 0.438705511941385 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167711467 chr6:167711466 nonsynonymous SNV 0.931 4 20 hm7G_associated_SNPs_25658 0 0 1 0 2 UNC93A chr6:167711558 5'GT 167711558 Upstream 93bp 23433 chr12 132210036 132210036 1 + G T STAD 132210037 + 132210017 132210057 41 AGTTTGAGATCATGCTGAAGGCCAAGCAGGCCCGGAACTCC AGTTTGAGATCATGCTGAATGCCAAGCAGGCCCGGAACTCC < 41bp 0.686924436681137 0.906261531019571 NA NA prediction 0.438674188676868 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132210037 chr12:132210036 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_25660 0 0 1 0 1 SFSWAP chr12:132209950 3'AG 132209950 Downstream 87bp 23434 chr3 50683610 50683610 1 + G A rs183396526 50683611 + 50683591 50683631 41 TCTACTCCAACACGGGCCAGGCCATCTCCCCGGGGATGAAG TCTACTCCAACACGGGCCAAGCCATCTCCCCGGGGATGAAG < 41bp 0.531519006105939 0.750851105368728 NA NA prediction 0.438664198525577 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683611 chr3:50683610 synonymous SNV . 0 20 hm7G_associated_SNPs_25661 0 0 1 0 2 MAPKAPK3 chr3:50683571 3'AG 50683571 Downstream 40bp 23435 chr3 50683610 50683610 1 + G A rs183396526 50683611 + 50683591 50683631 41 TCTACTCCAACACGGGCCAGGCCATCTCCCCGGGGATGAAG TCTACTCCAACACGGGCCAAGCCATCTCCCCGGGGATGAAG < 41bp 0.531519006105939 0.750851105368728 NA NA prediction 0.438664198525577 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50683611 chr3:50683610 synonymous SNV . 0 20 hm7G_associated_SNPs_25661 0 0 1 0 2 MAPKAPK3 chr3:50683695 5'GT 50683695 Upstream 86bp 23436 chr16 50063678 50063678 1 + G T ACC 50063679 + 50063659 50063699 41 TGTACAGCTACTGGTGCCTGGAACTGGTTAATAGACCCTGA TGTACAGCTACTGGTGCCTTGAACTGGTTAATAGACCCTGA < 41bp 0.67473895731501 0.894062784058344 NA NA prediction 0.438647653486668 Functional Gain - CNEP1R1 ENSG00000205423 CDS Human protein_coding chr16:50063679 chr16:50063678 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25663 0 0 1 0 2 CNEP1R1 chr16:50063636 3'AG 50063636 Downstream 43bp 23437 chr16 50063678 50063678 1 + G T ACC 50063679 + 50063659 50063699 41 TGTACAGCTACTGGTGCCTGGAACTGGTTAATAGACCCTGA TGTACAGCTACTGGTGCCTTGAACTGGTTAATAGACCCTGA < 41bp 0.67473895731501 0.894062784058344 NA NA prediction 0.438647653486668 Functional Gain - CNEP1R1 ENSG00000205423 CDS Human protein_coding chr16:50063679 chr16:50063678 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25663 0 0 1 0 2 CNEP1R1 chr16:50063709 5'GT 50063709 Upstream 32bp 23438 chrX 99921880 99921880 1 + G A LUAD 99921881 + 99921861 99921901 41 CGCCAGGGGACACCCTCCCGGGTCTGTCAGTCCAGCCGCCA CGCCAGGGGACACCCTCCCAGGTCTGTCAGTCCAGCCGCCA < 41bp 0.535250098765128 0.754556515612408 NA NA prediction 0.43861283369456 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99921881 chrX:99921880 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_25665 0 0 0 0 1 SRPX2 chrX:99921930 5'GT 99921930 Upstream 51bp 23439 chr14 104198977 104198977 1 + G T UCEC 104198978 + 104198958 104198998 41 AGGCAACGCACGGGCCACAGGCATGTTCCTGCAGTATACAG AGGCAACGCACGGGCCACATGCATGTTCCTGCAGTATACAG < 41bp 0.375713286851619 0.719306062710185 NA NA prediction 0.438612125420369 Functional Gain - ZFYVE21 ENSG00000100711 CDS Human protein_coding chr14:104198978 chr14:104198977 nonsynonymous SNV 0.890 4 20 hm7G_associated_SNPs_25666 0 0 1 1 1 ZFYVE21 chr14:104198957 3'AG 104198957 Downstream 21bp 23440 chr7 44150787 44150787 1 + G A STAD 44150788 + 44150768 44150808 41 ACGCACAGAATGAGGTGGTGGCCACCGATGACCTGGATTTC ACGCACAGAATGAGGTGGTAGCCACCGATGACCTGGATTTC < 41bp 0.511829158891539 0.731133358023881 NA NA prediction 0.438608398264683 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44150788 chr7:44150787 synonymous SNV . 0 20 hm7G_associated_SNPs_25667 0 0 0 0 1 AEBP1 chr7:44150838 5'GT 44150838 Upstream 52bp 23441 chrX 106033448 106033448 1 + G T LUAD 106033449 + 106033429 106033469 41 AAGACATGTGTTGACCCATGGCTGTTAGAACACAGGACTTG AAGACATGTGTTGACCCATTGCTGTTAGAACACAGGACTTG < 41bp 0.673429045041253 0.892722467012683 NA NA prediction 0.43858684394286 Functional Gain - RNF128 ENSG00000133135 CDS Human protein_coding chrX:106033449 chrX:106033448 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25668 0 0 0 0 2 RNF128 chrX:106033416 3'AG 106033416 Downstream 33bp 23442 chrX 106033448 106033448 1 + G T LUAD 106033449 + 106033429 106033469 41 AAGACATGTGTTGACCCATGGCTGTTAGAACACAGGACTTG AAGACATGTGTTGACCCATTGCTGTTAGAACACAGGACTTG < 41bp 0.673429045041253 0.892722467012683 NA NA prediction 0.43858684394286 Functional Gain - RNF128 ENSG00000133135 CDS Human protein_coding chrX:106033449 chrX:106033448 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25668 0 0 0 0 2 RNF128 chrX:106033512 5'GT 106033512 Upstream 65bp 23443 chr16 599132 599132 1 + G T COAD 599133 + 599113 599153 41 TCCGTCTTCAGGGACCACAGGGCCACGTGGTCTGTGTTCCA TCCGTCTTCAGGGACCACATGGCCACGTGGTCTGTGTTCCA < 41bp 0.366852167520086 0.719285394053435 NA NA prediction 0.438570788106869 Functional Gain - CAPN15 ENSG00000103326 CDS Human protein_coding chr16:599133 chr16:599132 nonsynonymous SNV 0.097 1 20 hm7G_associated_SNPs_25670 0 0 1 0 1 CAPN15 chr16:599201 5'GT 599201 Upstream 70bp 23444 chr22 51143492 51143492 1 + G T LUSC 51143493 + 51143473 51143513 41 AAGGTTGTGTCTGTGACAAGGAAGCCAGAAGAGGACGGGGC AAGGTTGTGTCTGTGACAATGAAGCCAGAAGAGGACGGGGC < 41bp 0.685525256826384 0.904801677417192 NA NA prediction 0.438552841181615 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143493 chr22:51143492 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_25674 0 0 1 0 1 SHANK3 chr22:51143524 5'GT 51143524 Upstream 33bp 23445 chr14 104573196 104573196 1 + G A COAD 104573197 + 104573177 104573217 41 CTGTGCTGCTGCCCACGCCGGTGACGTGGAGGCGCTGCAGG CTGTGCTGCTGCCCACGCCAGTGACGTGGAGGCGCTGCAGG < 41bp 0.509372335488955 0.728644363758356 NA NA prediction 0.438544056538803 Functional Gain - ASPG ENSG00000166183 CDS Human protein_coding chr14:104573197 chr14:104573196 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_25676 0 0 0 0 2 ASPG chr14:104573136 3'AG 104573136 Downstream 61bp 23446 chr14 104573196 104573196 1 + G A COAD 104573197 + 104573177 104573217 41 CTGTGCTGCTGCCCACGCCGGTGACGTGGAGGCGCTGCAGG CTGTGCTGCTGCCCACGCCAGTGACGTGGAGGCGCTGCAGG < 41bp 0.509372335488955 0.728644363758356 NA NA prediction 0.438544056538803 Functional Gain - ASPG ENSG00000166183 CDS Human protein_coding chr14:104573197 chr14:104573196 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_25676 0 0 0 0 2 ASPG chr14:104573231 5'GT 104573231 Upstream 36bp 23447 chr10 129839198 129839198 1 + G T COAD 129839199 + 129839179 129839219 41 TTTAGCTTGCCGCTCGCCAGGGCTCTCAGGGGCAACGAGAC TTTAGCTTGCCGCTCGCCATGGCTCTCAGGGGCAACGAGAC < 41bp 0.358552105608116 0.719269419200022 NA NA prediction 0.438538838400045 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839199 chr10:129839198 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_25677 0 0 0 2 2 PTPRE chr10:129839139 3'AG 129839139 Downstream 60bp 23448 chr10 129839198 129839198 1 + G T COAD 129839199 + 129839179 129839219 41 TTTAGCTTGCCGCTCGCCAGGGCTCTCAGGGGCAACGAGAC TTTAGCTTGCCGCTCGCCATGGCTCTCAGGGGCAACGAGAC < 41bp 0.358552105608116 0.719269419200022 NA NA prediction 0.438538838400045 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839199 chr10:129839198 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_25677 0 0 0 2 2 PTPRE chr10:129839254 5'GT 129839254 Upstream 57bp 23449 chr20 45633653 45633653 1 + G A LUSC 45633654 + 45633634 45633674 41 GCCAGACGCAGTACAGTGCGGGGATCCAGCAGGCTACCCCC GCCAGACGCAGTACAGTGCAGGGATCCAGCAGGCTACCCCC < 41bp 0.525352451651284 0.744620398793073 NA NA prediction 0.438535894283578 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45633654 chr20:45633653 synonymous SNV . 0 20 hm7G_associated_SNPs_25678 0 0 0 0 2 EYA2 chr20:45633581 3'AG 45633581 Downstream 73bp 23450 chr20 45633653 45633653 1 + G A LUSC 45633654 + 45633634 45633674 41 GCCAGACGCAGTACAGTGCGGGGATCCAGCAGGCTACCCCC GCCAGACGCAGTACAGTGCAGGGATCCAGCAGGCTACCCCC < 41bp 0.525352451651284 0.744620398793073 NA NA prediction 0.438535894283578 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45633654 chr20:45633653 synonymous SNV . 0 20 hm7G_associated_SNPs_25678 0 0 0 0 2 EYA2 chr20:45633723 5'GT 45633723 Upstream 71bp 23451 chr19 861719 861719 1 + G A STAD 861720 + 861700 861740 41 TGTCGGAGAAGGCCACACTGGGCCCTGCTGTGCGCCCCCTG TGTCGGAGAAGGCCACACTAGGCCCTGCTGTGCGCCCCCTG < 41bp 0.556396815095917 0.775648419344487 NA NA prediction 0.43850320849714 Functional Gain - CFD ENSG00000197766 CDS Human protein_coding chr19:861720 chr19:861719 synonymous SNV . 0 20 hm7G_associated_SNPs_25681 0 0 0 0 1 CFD chr19:861699 3'AG 861699 Downstream 21bp 23452 chrX 16775413 16775413 1 + G T COAD 16775414 + 16775394 16775434 41 TGCTTGACAAAAAGCAAGAGGAGACAGCCGTACTGGAAGGT TGCTTGACAAAAAGCAAGATGAGACAGCCGTACTGGAAGGT < 41bp 0.667410030634135 0.886646231278742 NA NA prediction 0.438472401289214 Functional Gain - SYAP1 ENSG00000169895 CDS Human protein_coding chrX:16775414 chrX:16775413 nonsynonymous SNV 0.438 0 20 hm7G_associated_SNPs_25685 0 0 1 0 1 SYAP1 chrX:16775432 5'GT 16775432 Upstream 20bp 23453 chr19 35827063 35827063 1 + G T LIHC 35827064 + 35827044 35827084 41 AATTGCAGTGGCTCCTAGAGGGGGTTCCAATGAGGCAGGCT AATTGCAGTGGCTCCTAGATGGGGTTCCAATGAGGCAGGCT < 41bp 0.369737206974961 0.719234702725232 NA NA prediction 0.438469405450464 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35827064 chr19:35827063 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_25686 0 0 0 0 1 CD22 chr19:35827052 3'AG 35827052 Downstream 12bp 23454 chr1 206758006 206758006 1 + G T UCEC 206758007 + 206757987 206758027 41 TTTTTAAGCGGATACACAAGGACGGACAAGGTAGGAGAAAG TTTTTAAGCGGATACACAATGACGGACAAGGTAGGAGAAAG < 41bp 0.665004655743885 0.884223099353279 NA NA prediction 0.438436887218787 Functional Gain - RASSF5 ENSG00000136653 CDS Human other chr1:206758007 chr1:206758006 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_25687 0 0 1 0 1 RASSF5 chr1:206758016 5'GT 206758016 Upstream 11bp 23455 chr19 55019196 55019196 1 + G A STAD 55019197 + 55019177 55019217 41 ATGTGCCGGGGCCCGGTTGGGGTTCAAACATTCCGCCTGGA ATGTGCCGGGGCCCGGTTGAGGTTCAAACATTCCGCCTGGA < 41bp 0.497129939742692 0.719206422496738 NA NA prediction 0.438412844993476 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019197 chr19:55019196 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_25689 0 0 0 0 1 LAIR2 chr19:55019106 3'AG 55019106 Downstream 91bp 23456 chr22 18064157 18064157 1 + G A SKCM 18064158 + 18064138 18064178 41 TGAAGACGGCTCGGGCGGAGGGCTTCTTCGGCATGTACCGA TGAAGACGGCTCGGGCGGAAGGCTTCTTCGGCATGTACCGA < 41bp 0.520149529590568 0.739331192412589 NA NA prediction 0.438363325644043 Functional Gain - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064158 chr22:18064157 synonymous SNV . 0 20 hm7G_associated_SNPs_25691 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064124 3'AG 18064124 Downstream 34bp 23457 chr22 18064157 18064157 1 + G A SKCM 18064158 + 18064138 18064178 41 TGAAGACGGCTCGGGCGGAGGGCTTCTTCGGCATGTACCGA TGAAGACGGCTCGGGCGGAAGGCTTCTTCGGCATGTACCGA < 41bp 0.520149529590568 0.739331192412589 NA NA prediction 0.438363325644043 Functional Gain - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064158 chr22:18064157 synonymous SNV . 0 20 hm7G_associated_SNPs_25691 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064179 5'GT 18064179 Upstream 23bp 23458 chr21 47411943 47411943 1 + G A UCEC 47411944 + 47411924 47411964 41 GGCGAGCCTGGAGCTGACGGGGAGGCGGGGAGACCAGGGAG GGCGAGCCTGGAGCTGACGAGGAGGCGGGGAGACCAGGGAG < 41bp 0.537130075453064 0.756307519120867 NA NA prediction 0.438354887335606 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47411944 chr21:47411943 nonsynonymous SNV 0.034 5 20 hm7G_associated_SNPs_25693 0 0 0 0 2 COL6A1 chr21:47411924 3'AG 47411924 Downstream 20bp 23459 chr21 47411943 47411943 1 + G A UCEC 47411944 + 47411924 47411964 41 GGCGAGCCTGGAGCTGACGGGGAGGCGGGGAGACCAGGGAG GGCGAGCCTGGAGCTGACGAGGAGGCGGGGAGACCAGGGAG < 41bp 0.537130075453064 0.756307519120867 NA NA prediction 0.438354887335606 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47411944 chr21:47411943 nonsynonymous SNV 0.034 5 20 hm7G_associated_SNPs_25693 0 0 0 0 2 COL6A1 chr21:47411986 5'GT 47411986 Upstream 44bp 23460 chr6 130363932 130363932 1 + G T GBM 130363933 + 130363913 130363953 41 TGGAGTGGGCACGTTACCAGGAAGTGACTTAAAGGTAAACC TGGAGTGGGCACGTTACCATGAAGTGACTTAAAGGTAAACC < 41bp 0.385422621709932 0.719166470117098 NA NA prediction 0.438332940234196 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130363933 chr6:130363932 stopgain 0.997 1 20 hm7G_associated_SNPs_25695 0 0 0 0 1 L3MBTL3 chr6:130363946 5'GT 130363946 Upstream 15bp 23461 chr19 18542671 18542671 1 + G A UCEC 18542672 + 18542652 18542692 41 AGCCCTCCCCACGAGCCCAGGGTGAGTAGGGAAGCTCCAGC AGCCCTCCCCACGAGCCCAAGGTGAGTAGGGAAGCTCCAGC < 41bp 0.513173132173491 0.732331084167401 NA NA prediction 0.438315903987821 Functional Gain - SSBP4 ENSG00000130511 CDS Human protein_coding chr19:18542672 chr19:18542671 synonymous SNV . 0 20 hm7G_associated_SNPs_25696 0 0 1 0 1 SSBP4 chr19:18542603 3'AG 18542603 Downstream 69bp 23462 chr3 38044030 38044030 1 + G T LIHC 38044031 + 38044011 38044051 41 CCAGTGACATCTTCTTGCTGGTCACAGCCAGCGTCTGCTAC CCAGTGACATCTTCTTGCTTGTCACAGCCAGCGTCTGCTAC < 41bp 0.371955945946212 0.719154266858058 NA NA prediction 0.438308533716115 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38044031 chr3:38044030 synonymous SNV . 0 20 hm7G_associated_SNPs_25697 0 0 0 0 1 VILL chr3:38044066 5'GT 38044066 Upstream 37bp 23463 chr22 30127265 30127265 1 - C T UCEC 30127264 - 30127244 30127284 41 AGCTGCCTCCATCCCTGCGGGCACCCCCACCTGGGGGGTGG AGCTGCCTCCATCCCTGCGAGCACCCCCACCTGGGGGGTGG < 41bp 0.488990042807181 0.719153602697162 NA NA prediction 0.438307205394325 Functional Gain - ZMAT5 ENSG00000100319 CDS Human protein_coding chr22:30127264 chr22:30127265 synonymous SNV . 0 20 hm7G_associated_SNPs_25698 0 0 0 0 1 ZMAT5 chr22:30127343 3'AG 30127343 Downstream 79bp 23464 chr2 95947688 95947688 1 + G A HNSC 95947689 + 95947669 95947709 41 CCAGTTTGCAGACACCCCAGGGAACCTGCCCCCGTCCATGA CCAGTTTGCAGACACCCCAAGGAACCTGCCCCCGTCCATGA < 41bp 0.505116309234818 0.724259013006877 NA NA prediction 0.438285407544117 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95947689 chr2:95947688 nonsynonymous SNV 0.797 2 20 hm7G_associated_SNPs_25699 0 0 0 0 2 PROM2 chr2:95947673 3'AG 95947673 Downstream 16bp 23465 chr2 95947688 95947688 1 + G A HNSC 95947689 + 95947669 95947709 41 CCAGTTTGCAGACACCCCAGGGAACCTGCCCCCGTCCATGA CCAGTTTGCAGACACCCCAAGGAACCTGCCCCCGTCCATGA < 41bp 0.505116309234818 0.724259013006877 NA NA prediction 0.438285407544117 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95947689 chr2:95947688 nonsynonymous SNV 0.797 2 20 hm7G_associated_SNPs_25699 0 0 0 0 2 PROM2 chr2:95947764 5'GT 95947764 Upstream 77bp 23466 chr2 220399994 220399994 1 + G T LUAD 220399995 + 220399975 220400015 41 GGTCAGGATCCCCAACAGGGGCTCAGCCCGGTACCTGGCGA GGTCAGGATCCCCAACAGGTGCTCAGCCCGGTACCTGGCGA < 41bp 0.380572362087209 0.719138836874635 NA NA prediction 0.438277673749269 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220399995 chr2:220399994 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25701 0 0 1 0 1 ASIC4 chr2:220400046 5'GT 220400046 Upstream 53bp 23467 chr19 47542712 47542712 1 + G A STAD 47542713 + 47542693 47542733 41 CCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCC CCCACGCCCTGGGCCTTGTAGCCCTCGGGCACACGTTGCCC < 41bp 0.562753931763846 0.781885236079096 NA NA prediction 0.4382626086305 Functional Gain - NPAS1 ENSG00000130751 CDS Human protein_coding chr19:47542713 chr19:47542712 synonymous SNV . 0 20 hm7G_associated_SNPs_25702 0 0 0 0 1 NPAS1 chr19:47542665 3'AG 47542665 Downstream 48bp 23468 chr17 78084769 78084769 1 + G A rs1042396 78084770 + 78084750 78084790 41 AGCCTTCCAACTTCATCAGGGGCTCTGAGGACGGCTGCCCC AGCCTTCCAACTTCATCAGAGGCTCTGAGGACGGCTGCCCC < 41bp 0.507173697050018 0.726303989351844 NA NA prediction 0.438260584603652 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78084770 chr17:78084769 synonymous SNV . 0 20 hm7G_associated_SNPs_25704 2 0 0 0 2 GAA chr17:78084740 3'AG 78084740 Downstream 30bp 23469 chr17 78084769 78084769 1 + G A rs1042396 78084770 + 78084750 78084790 41 AGCCTTCCAACTTCATCAGGGGCTCTGAGGACGGCTGCCCC AGCCTTCCAACTTCATCAGAGGCTCTGAGGACGGCTGCCCC < 41bp 0.507173697050018 0.726303989351844 NA NA prediction 0.438260584603652 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78084770 chr17:78084769 synonymous SNV . 0 20 hm7G_associated_SNPs_25704 2 0 0 0 2 GAA chr17:78084824 5'GT 78084824 Upstream 56bp 23470 chrX 21985319 21985319 1 + G T UCEC 21985320 + 21985300 21985340 41 CCCTTGTTCTCCAGCTGATGGTGAGACCATTCTAAAAGGCC CCCTTGTTCTCCAGCTGATTGTGAGACCATTCTAAAAGGCC < 41bp 0.381863664880498 0.719122274751426 NA NA prediction 0.438244549502853 Functional Gain - SMS ENSG00000102172 CDS Human protein_coding chrX:21985320 chrX:21985319 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_25708 0 0 1 0 1 SMS chrX:21985314 3'AG 21985314 Downstream 6bp 23471 chr8 37691586 37691586 1 + G T LUAD 37691587 + 37691567 37691607 41 AGGCCTGCAGCCGCATCGTGGGTGCCCTGGAGCGCATTGGG AGGCCTGCAGCCGCATCGTTGGTGCCCTGGAGCGCATTGGG < 41bp 0.357698127766275 0.719120024962228 NA NA prediction 0.438240049924455 Functional Gain - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37691587 chr8:37691586 synonymous SNV . 0 20 hm7G_associated_SNPs_25709 0 0 0 0 1 ADGRA2 chr8:37691646 5'GT 37691646 Upstream 61bp 23472 chr19 2916959 2916959 1 + G T STAD 2916960 + 2916940 2916980 41 ATTCTGTACACATAATGAAGGTAATCAATATGGAGAAGCCA ATTCTGTACACATAATGAATGTAATCAATATGGAGAAGCCA < 41bp 0.419589198591016 0.719110411145138 NA NA prediction 0.438220822290276 Functional Gain - ZNF57 ENSG00000171970 CDS Human protein_coding chr19:2916960 chr19:2916959 nonsynonymous SNV 0.224 0 20 hm7G_associated_SNPs_25713 0 0 1 0 1 ZNF57 chr19:2916922 3'AG 2916922 Downstream 38bp 23473 chr12 20832982 20832982 1 + G T LUSC 20832983 + 20832963 20833003 41 GAAAAGAAGACTTTCAAAAGGAGAAAAATCTACTGCCAAAT GAAAAGAAGACTTTCAAAATGAGAAAAATCTACTGCCAAAT < 41bp 0.421027340411601 0.719106825069496 NA NA prediction 0.438213650138992 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20832983 chr12:20832982 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_25715 0 0 1 0 1 PDE3A chr12:20832964 3'AG 20832964 Downstream 19bp 23474 chr20 34519238 34519238 1 + G T SKCM 34519239 + 34519219 34519259 41 GGGGACATATGCATGGCCTGGCATTTCTAGAAGAGAACTAC GGGGACATATGCATGGCCTTGCATTTCTAGAAGAGAACTAC < 41bp 0.364455339532462 0.719100210613713 NA NA prediction 0.438200421227427 Functional Gain - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34519239 chr20:34519238 synonymous SNV . 0 20 hm7G_associated_SNPs_25716 0 0 1 0 1 PHF20 chr20:34519171 3'AG 34519171 Downstream 68bp 23475 chr15 49575791 49575791 1 + G T COAD 49575792 + 49575772 49575812 41 ATAGAATTTAGTCCTCTGAGGGCAACCGATGTAAAACTCCC ATAGAATTTAGTCCTCTGATGGCAACCGATGTAAAACTCCC < 41bp 0.383274310839816 0.71909155562032 NA NA prediction 0.438183111240641 Functional Gain - GALK2 ENSG00000156958 CDS Human protein_coding chr15:49575792 chr15:49575791 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_25719 0 0 1 0 1 GALK2 chr15:49575763 3'AG 49575763 Downstream 29bp 23476 chrX 110435808 110435808 1 + G T LUAD 110435809 + 110435789 110435829 41 ATGAAATTCTGGTCATGAGGGAAAATAAGAACCCTAATATT ATGAAATTCTGGTCATGAGTGAAAATAAGAACCCTAATATT < 41bp 0.404730792066899 0.719091082160947 NA NA prediction 0.438182164321894 Functional Gain - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110435809 chrX:110435808 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_25720 0 0 0 1 2 PAK3 chrX:110435734 3'AG 110435734 Downstream 75bp 23477 chrX 110435808 110435808 1 + G T LUAD 110435809 + 110435789 110435829 41 ATGAAATTCTGGTCATGAGGGAAAATAAGAACCCTAATATT ATGAAATTCTGGTCATGAGTGAAAATAAGAACCCTAATATT < 41bp 0.404730792066899 0.719091082160947 NA NA prediction 0.438182164321894 Functional Gain - PAK3 ENSG00000077264 CDS Human protein_coding chrX:110435809 chrX:110435808 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_25720 0 0 0 1 2 PAK3 chrX:110435846 5'GT 110435846 Upstream 39bp 23478 chr9 117052346 117052346 1 + G T UCEC 117052347 + 117052327 117052367 41 TGATTTTTCAGGGACCAAAGGGAAAGCAAGGCAAGGCAGGG TGATTTTTCAGGGACCAAATGGAAAGCAAGGCAAGGCAGGG < 41bp 0.677954433186933 0.897042850632475 NA NA prediction 0.438176834891084 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117052347 chr9:117052346 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_25722 0 0 1 0 2 COL27A1 chr9:117052338 3'AG 117052338 Downstream 9bp 23479 chr9 117052346 117052346 1 + G T UCEC 117052347 + 117052327 117052367 41 TGATTTTTCAGGGACCAAAGGGAAAGCAAGGCAAGGCAGGG TGATTTTTCAGGGACCAAATGGAAAGCAAGGCAAGGCAGGG < 41bp 0.677954433186933 0.897042850632475 NA NA prediction 0.438176834891084 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117052347 chr9:117052346 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_25722 0 0 1 0 2 COL27A1 chr9:117052391 5'GT 117052391 Upstream 46bp 23480 chr20 37536802 37536802 1 + G T LUSC 37536803 + 37536783 37536823 41 ACCTACAACGGGGACATCAGGGAGACCAGGACAGACCAAGA ACCTACAACGGGGACATCATGGAGACCAGGACAGACCAAGA < 41bp 0.68200458583675 0.901074113696922 NA NA prediction 0.438139055720343 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37536803 chr20:37536802 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_25726 0 0 0 0 1 PPP1R16B chr20:37536836 5'GT 37536836 Upstream 35bp 23481 chr2 203817371 203817371 1 + G T UCEC 203817372 + 203817352 203817392 41 CACAAGTGATTATACCTCAGGGGCAACTTGTGGATGTGAAT CACAAGTGATTATACCTCATGGGCAACTTGTGGATGTGAAT < 41bp 0.385471181073617 0.719048535278953 NA NA prediction 0.438097070557907 Functional Gain - CARF ENSG00000138380 CDS Human protein_coding chr2:203817372 chr2:203817371 nonsynonymous SNV 0.802 3 20 hm7G_associated_SNPs_25732 0 0 0 2 2 CARF chr2:203817282 3'AG 203817282 Downstream 90bp 23482 chr2 203817371 203817371 1 + G T UCEC 203817372 + 203817352 203817392 41 CACAAGTGATTATACCTCAGGGGCAACTTGTGGATGTGAAT CACAAGTGATTATACCTCATGGGCAACTTGTGGATGTGAAT < 41bp 0.385471181073617 0.719048535278953 NA NA prediction 0.438097070557907 Functional Gain - CARF ENSG00000138380 CDS Human protein_coding chr2:203817372 chr2:203817371 nonsynonymous SNV 0.802 3 20 hm7G_associated_SNPs_25732 0 0 0 2 2 CARF chr2:203817402 5'GT 203817402 Upstream 32bp 23483 chr4 166924656 166924656 1 + G T LUSC 166924657 + 166924637 166924677 41 GGTCATGTGATAGGCTTTTGGCATGAACACACAAGACCAGA GGTCATGTGATAGGCTTTTTGCATGAACACACAAGACCAGA < 41bp 0.392376800293765 0.719040072323371 NA NA prediction 0.438080144646742 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166924657 chr4:166924656 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_25734 0 0 1 0 1 TLL1 chr4:166924721 5'GT 166924721 Upstream 66bp 23484 chr19 46201934 46201934 1 + G T LUSC 46201935 + 46201915 46201955 41 GTCTATACCTCACAGCCCCGGCCCCACCAGGATCCAGGCTA GTCTATACCTCACAGCCCCTGCCCCACCAGGATCCAGGCTA < 41bp 0.362007901247674 0.719032441321899 NA NA prediction 0.438064882643799 Functional Gain - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46201935 chr19:46201934 nonsynonymous SNV 0.513 4 20 hm7G_associated_SNPs_25735 0 0 1 0 1 QPCTL chr19:46201957 5'GT 46201957 Upstream 24bp 23485 chr11 17332768 17332768 1 + G T UCEC 17332769 + 17332749 17332789 41 GATCAACTAAAAGAGGTATGGGAAGAGACTGATGGATTGGA GATCAACTAAAAGAGGTATTGGAAGAGACTGATGGATTGGA < 41bp 0.660884890848072 0.87991529009865 NA NA prediction 0.438060798501156 Functional Gain - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17332769 chr11:17332768 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_25736 0 0 1 0 2 NUCB2 chr11:17332740 3'AG 17332740 Downstream 29bp 23486 chr11 17332768 17332768 1 + G T UCEC 17332769 + 17332749 17332789 41 GATCAACTAAAAGAGGTATGGGAAGAGACTGATGGATTGGA GATCAACTAAAAGAGGTATTGGAAGAGACTGATGGATTGGA < 41bp 0.660884890848072 0.87991529009865 NA NA prediction 0.438060798501156 Functional Gain - NUCB2 ENSG00000070081 CDS Human protein_coding chr11:17332769 chr11:17332768 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_25736 0 0 1 0 2 NUCB2 chr11:17332830 5'GT 17332830 Upstream 63bp 23487 chr19 45515439 45515439 1 + G A LUAD 45515440 + 45515420 45515460 41 GGAGCAGCCCAAGCAGCGCGGCATGCGCTTCCGCTACGAGT GGAGCAGCCCAAGCAGCGCAGCATGCGCTTCCGCTACGAGT < 41bp 0.485494999365997 0.719020395342014 NA NA prediction 0.438040790684029 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45515440 chr19:45515439 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_25737 0 0 0 0 1 RELB chr19:45515534 5'GT 45515534 Upstream 96bp 23488 chr1 76280754 76280754 1 + G T GBM 76280755 + 76280735 76280775 41 ATACTTCAATGAAACAAAAGGATTAGAGTACATTGAACAGT ATACTTCAATGAAACAAAATGATTAGAGTACATTGAACAGT < 41bp 0.658662597119745 0.877678530140634 NA NA prediction 0.438031866041778 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76280755 chr1:76280754 stopgain 0.999 1 20 hm7G_associated_SNPs_25738 0 0 1 0 2 MSH4 chr1:76280706 3'AG 76280706 Downstream 49bp 23489 chr1 76280754 76280754 1 + G T GBM 76280755 + 76280735 76280775 41 ATACTTCAATGAAACAAAAGGATTAGAGTACATTGAACAGT ATACTTCAATGAAACAAAATGATTAGAGTACATTGAACAGT < 41bp 0.658662597119745 0.877678530140634 NA NA prediction 0.438031866041778 Functional Gain - MSH4 ENSG00000057468 CDS Human protein_coding chr1:76280755 chr1:76280754 stopgain 0.999 1 20 hm7G_associated_SNPs_25738 0 0 1 0 2 MSH4 chr1:76280821 5'GT 76280821 Upstream 68bp 23490 chr1 36053989 36053989 1 + G A LUSC 36053990 + 36053970 36054010 41 CCTTGGCCAAAGACAGCCTGGTGGGCGGCATCACAAATCCT CCTTGGCCAAAGACAGCCTAGTGGGCGGCATCACAAATCCT < 41bp 0.509109775594559 0.728122287427774 NA NA prediction 0.438025023666432 Functional Gain - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36053990 chr1:36053989 synonymous SNV . 0 20 hm7G_associated_SNPs_25739 0 0 0 0 1 TFAP2E chr1:36053931 3'AG 36053931 Downstream 59bp 23491 chr19 50149816 50149816 1 + G T LUAD 50149817 + 50149797 50149837 41 CACGGACAGCTTCCTCGCAGGGCTGGTGAGTGTCCTGGATC CACGGACAGCTTCCTCGCATGGCTGGTGAGTGTCCTGGATC < 41bp 0.362600420995766 0.719004587737721 NA NA prediction 0.438009175475443 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50149817 chr19:50149816 nonsynonymous SNV 0.572 3 20 hm7G_associated_SNPs_25741 0 0 1 0 2 SCAF1 chr19:50149783 3'AG 50149783 Downstream 34bp 23492 chr19 50149816 50149816 1 + G T LUAD 50149817 + 50149797 50149837 41 CACGGACAGCTTCCTCGCAGGGCTGGTGAGTGTCCTGGATC CACGGACAGCTTCCTCGCATGGCTGGTGAGTGTCCTGGATC < 41bp 0.362600420995766 0.719004587737721 NA NA prediction 0.438009175475443 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50149817 chr19:50149816 nonsynonymous SNV 0.572 3 20 hm7G_associated_SNPs_25741 0 0 1 0 2 SCAF1 chr19:50149883 5'GT 50149883 Upstream 68bp 23493 chr1 28157368 28157368 1 + G A rs555143299 28157369 + 28157349 28157389 41 GGCGGCAGCCGCGAACTCCGGCTCTAGCCTCCCGCTGTTCG GGCGGCAGCCGCGAACTCCAGCTCTAGCCTCCCGCTGTTCG < 41bp 0.498502326942828 0.719000081055318 NA NA prediction 0.438000162110636 Functional Gain - PPP1R8 ENSG00000117751 CDS Human protein_coding chr1:28157369 chr1:28157368 nonsynonymous SNV 0.979 0 20 hm7G_associated_SNPs_25742 0 0 1 0 1 PPP1R8 chr1:28157402 5'GT 28157402 Upstream 35bp 23494 chr8 33354780 33354780 1 + G T STAD 33354781 + 33354761 33354801 41 AAGAGAATTTGTCGAAGATGGTGAGGTAGATGAGAGTGACA AAGAGAATTTGTCGAAGATTGTGAGGTAGATGAGAGTGACA < 41bp 0.665939850448808 0.884937615097136 NA NA prediction 0.437995529296655 Functional Gain - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33354781 chr8:33354780 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_25743 0 0 1 0 2 MAK16 chr8:33354750 3'AG 33354750 Downstream 31bp 23495 chr8 33354780 33354780 1 + G T STAD 33354781 + 33354761 33354801 41 AAGAGAATTTGTCGAAGATGGTGAGGTAGATGAGAGTGACA AAGAGAATTTGTCGAAGATTGTGAGGTAGATGAGAGTGACA < 41bp 0.665939850448808 0.884937615097136 NA NA prediction 0.437995529296655 Functional Gain - MAK16 ENSG00000198042 CDS Human protein_coding chr8:33354781 chr8:33354780 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_25743 0 0 1 0 2 MAK16 chr8:33354815 5'GT 33354815 Upstream 36bp 23496 chr16 29842318 29842318 1 + G A COAD 29842319 + 29842299 29842339 41 GATGTCACAGGGCAAGTTCGGCTTCGCCACGCTGACCTCGA GATGTCACAGGGCAAGTTCAGCTTCGCCACGCTGACCTCGA < 41bp 0.511623299549128 0.730610750352392 NA NA prediction 0.437974901606529 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29842319 chr16:29842318 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_25744 0 0 0 0 1 MVP chr16:29842394 5'GT 29842394 Upstream 77bp 23497 chr7 150704075 150704075 1 + G T UCEC 150704076 + 150704056 150704096 41 AGTAACACAGACAGTGCAGGGGCCCTGGGCACCCTCAGGTC AGTAACACAGACAGTGCAGTGGCCCTGGGCACCCTCAGGTC < 41bp 0.355438869419593 0.718976989356543 NA NA prediction 0.437953978713086 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704076 chr7:150704075 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_25746 0 0 0 0 2 NOS3 chr7:150703977 3'AG 150703977 Downstream 99bp 23498 chr7 150704075 150704075 1 + G T UCEC 150704076 + 150704056 150704096 41 AGTAACACAGACAGTGCAGGGGCCCTGGGCACCCTCAGGTC AGTAACACAGACAGTGCAGTGGCCCTGGGCACCCTCAGGTC < 41bp 0.355438869419593 0.718976989356543 NA NA prediction 0.437953978713086 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704076 chr7:150704075 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_25746 0 0 0 0 2 NOS3 chr7:150704093 5'GT 150704093 Upstream 19bp 23499 chr19 2806952 2806952 1 + G T UCEC 2806953 + 2806933 2806973 41 AAGGAGCTGGTGACGCTGCGGGCCCAGAAGTCCCGCCTGCT AAGGAGCTGGTGACGCTGCTGGCCCAGAAGTCCCGCCTGCT < 41bp 0.690434478444918 0.9093996151894 NA NA prediction 0.437930273488963 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2806953 chr19:2806952 nonsynonymous SNV 0.966 4 20 hm7G_associated_SNPs_25749 0 0 1 0 2 THOP1 chr19:2806915 3'AG 2806915 Downstream 38bp 23500 chr19 2806952 2806952 1 + G T UCEC 2806953 + 2806933 2806973 41 AAGGAGCTGGTGACGCTGCGGGCCCAGAAGTCCCGCCTGCT AAGGAGCTGGTGACGCTGCTGGCCCAGAAGTCCCGCCTGCT < 41bp 0.690434478444918 0.9093996151894 NA NA prediction 0.437930273488963 Functional Gain - THOP1 ENSG00000172009 CDS Human protein_coding chr19:2806953 chr19:2806952 nonsynonymous SNV 0.966 4 20 hm7G_associated_SNPs_25749 0 0 1 0 2 THOP1 chr19:2807050 5'GT 2807050 Upstream 99bp 23501 chr10 43325811 43325811 1 + G T UCEC 43325812 + 43325792 43325832 41 CAAGACCCAAGCAAAGGCAGGCAAGGTGCCAAAGGACAGGC CAAGACCCAAGCAAAGGCATGCAAGGTGCCAAAGGACAGGC < 41bp 0.680291754357099 0.899249291739529 NA NA prediction 0.43791507476486 Functional Gain - BMS1 ENSG00000165733 CDS Human protein_coding chr10:43325812 chr10:43325811 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_25753 0 0 0 0 1 BMS1 chr10:43325870 5'GT 43325870 Upstream 60bp 23502 chr20 25203605 25203605 1 + G T UCEC 25203606 + 25203586 25203626 41 CGACCTTGCAGCTGGTGTGGGCCTCATAGGTAAGGGGGCCC CGACCTTGCAGCTGGTGTGTGCCTCATAGGTAAGGGGGCCC < 41bp 0.674494011854247 0.893438924167471 NA NA prediction 0.437889824626449 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25203606 chr20:25203605 nonsynonymous SNV 0.098 3 20 hm7G_associated_SNPs_25758 0 0 1 0 1 ENTPD6 chr20:25203614 5'GT 25203614 Upstream 10bp 23503 chr11 293874 293874 1 + G A SKCM 293875 + 293855 293895 41 AGCTGAAGGACGCAGTGCGGGCCCGGGGCCTCCTGGACAGG AGCTGAAGGACGCAGTGCGAGCCCGGGGCCTCCTGGACAGG < 41bp 0.543267203017898 0.762211533859651 NA NA prediction 0.437888661683507 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:293875 chr11:293874 synonymous SNV . 0 20 hm7G_associated_SNPs_25759 0 0 1 0 2 PGGHG chr11:293830 3'AG 293830 Downstream 45bp 23504 chr11 293874 293874 1 + G A SKCM 293875 + 293855 293895 41 AGCTGAAGGACGCAGTGCGGGCCCGGGGCCTCCTGGACAGG AGCTGAAGGACGCAGTGCGAGCCCGGGGCCTCCTGGACAGG < 41bp 0.543267203017898 0.762211533859651 NA NA prediction 0.437888661683507 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:293875 chr11:293874 synonymous SNV . 0 20 hm7G_associated_SNPs_25759 0 0 1 0 2 PGGHG chr11:293925 5'GT 293925 Upstream 52bp 23505 chr11 58940192 58940192 1 + G A rs200185979 58940193 + 58940173 58940213 41 CGCCGGCCCCCGCGCGGGGGGCAGCGTGGTGCTGGGCCAGG CGCCGGCCCCCGCGCGGGGAGCAGCGTGGTGCTGGGCCAGG < 41bp 0.521312154668145 0.740253164096064 NA NA prediction 0.437882018855839 Functional Gain - DTX4 ENSG00000110042 CDS Human protein_coding chr11:58940193 chr11:58940192 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_25760 0 0 0 0 1 DTX4 chr11:58940279 5'GT 58940279 Upstream 88bp 23506 chr1 41482959 41482959 1 - C A UCEC 41482958 - 41482938 41482978 41 GGTGTTTCTGCGGCGCGACGGGAGCATCCAGGGCCCGCTGT GGTGTTTCTGCGGCGCGACTGGAGCATCCAGGGCCCGCTGT < 41bp 0.684616854476075 0.903544211496259 NA NA prediction 0.437854714040366 Functional Gain - SLFNL1 ENSG00000171790 CDS Human protein_coding chr1:41482958 chr1:41482959 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_25762 0 0 0 0 2 SLFNL1 chr1:41482906 5'GT 41482906 Upstream 54bp 23507 chr1 41482959 41482959 1 - C A UCEC 41482958 - 41482938 41482978 41 GGTGTTTCTGCGGCGCGACGGGAGCATCCAGGGCCCGCTGT GGTGTTTCTGCGGCGCGACTGGAGCATCCAGGGCCCGCTGT < 41bp 0.684616854476075 0.903544211496259 NA NA prediction 0.437854714040366 Functional Gain - SLFNL1 ENSG00000171790 CDS Human protein_coding chr1:41482958 chr1:41482959 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_25762 0 0 0 0 2 SLFNL1 chr1:41483049 3'AG 41483049 Downstream 91bp 23508 chr1 55144996 55144996 1 + G A SKCM 55144997 + 55144977 55145017 41 GCTGCTGGCCGCCCTGGAAGGGCTGAAAGGCAGCTCAGAGG GCTGCTGGCCGCCCTGGAAAGGCTGAAAGGCAGCTCAGAGG < 41bp 0.491218535519119 0.718922415993569 NA NA prediction 0.437844831987139 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55144997 chr1:55144996 nonsynonymous SNV 0.874 3 20 hm7G_associated_SNPs_25763 0 0 0 0 1 MROH7 chr1:55144936 3'AG 55144936 Downstream 61bp 23509 chr18 9513249 9513249 1 + G T UCEC 9513250 + 9513230 9513270 41 GATGATGAGAAAGATCATGGGAAGAAAAAAGGGAAATTTAA GATGATGAGAAAGATCATGTGAAGAAAAAAGGGAAATTTAA < 41bp 0.671079708352679 0.889990527012694 NA NA prediction 0.437821637320029 Functional Gain - RALBP1 ENSG00000017797 CDS Human protein_coding chr18:9513250 chr18:9513249 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_25764 0 0 1 0 1 RALBP1 chr18:9513287 5'GT 9513287 Upstream 39bp 23510 chr4 47517562 47517562 1 + G T LUAD 47517563 + 47517543 47517583 41 TGGTAGAAGCCTTCCAAAAGGAAATCACCATGTTGCCTCTG TGGTAGAAGCCTTCCAAAATGAAATCACCATGTTGCCTCTG < 41bp 0.379695929991927 0.718905118935694 NA NA prediction 0.437810237871387 Functional Gain - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47517563 chr4:47517562 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25765 0 0 0 0 1 ATP10D chr4:47517493 3'AG 47517493 Downstream 70bp 23511 chr2 233391306 233391306 1 + G A rs55921262 233391307 + 233391287 233391327 41 AAGAGAAGGGCTACAACAAGGAGCTCCGGCCCGTGGCACAC AAGAGAAGGGCTACAACAAAGAGCTCCGGCCCGTGGCACAC < 41bp 0.505764958767787 0.724656455206847 NA NA prediction 0.437782992878121 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233391307 chr2:233391306 synonymous SNV . 0 20 hm7G_associated_SNPs_25768 3 0 0 0 2 CHRND chr2:233391239 3'AG 233391239 Downstream 68bp 23512 chr2 233391306 233391306 1 + G A rs55921262 233391307 + 233391287 233391327 41 AAGAGAAGGGCTACAACAAGGAGCTCCGGCCCGTGGCACAC AAGAGAAGGGCTACAACAAAGAGCTCCGGCCCGTGGCACAC < 41bp 0.505764958767787 0.724656455206847 NA NA prediction 0.437782992878121 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233391307 chr2:233391306 synonymous SNV . 0 20 hm7G_associated_SNPs_25768 3 0 0 0 2 CHRND chr2:233391384 5'GT 233391384 Upstream 79bp 23513 chr11 828927 828927 1 + G A KIRC 828928 + 828908 828948 41 TCTGGACCGGGCTCACACTGGCTTCCTCACCGCCAGGGAGT TCTGGACCGGGCTCACACTAGCTTCCTCACCGCCAGGGAGT < 41bp 0.556345638770029 0.775234693891911 NA NA prediction 0.437778110243766 Functional Gain - CRACR2B ENSG00000177685 CDS Human protein_coding chr11:828928 chr11:828927 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_25769 0 0 1 0 1 CRACR2B chr11:828963 5'GT 828963 Upstream 37bp 23514 chr8 37633507 37633507 1 + G T LUAD 37633508 + 37633488 37633528 41 ACCAGGTTGAGCTGAGCATGGGCATGTCCGCGGATTTCCAG ACCAGGTTGAGCTGAGCATTGGCATGTCCGCGGATTTCCAG < 41bp 0.689222640034482 0.908107823356164 NA NA prediction 0.437770366643365 Functional Gain - PLPBP ENSG00000147471 CDS Human protein_coding chr8:37633508 chr8:37633507 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25771 0 0 1 0 2 PLPBP chr8:37633436 3'AG 37633436 Downstream 72bp 23515 chr8 37633507 37633507 1 + G T LUAD 37633508 + 37633488 37633528 41 ACCAGGTTGAGCTGAGCATGGGCATGTCCGCGGATTTCCAG ACCAGGTTGAGCTGAGCATTGGCATGTCCGCGGATTTCCAG < 41bp 0.689222640034482 0.908107823356164 NA NA prediction 0.437770366643365 Functional Gain - PLPBP ENSG00000147471 CDS Human protein_coding chr8:37633508 chr8:37633507 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25771 0 0 1 0 2 PLPBP chr8:37633534 5'GT 37633534 Upstream 28bp 23516 chr16 84488546 84488546 1 + G T UCEC 84488547 + 84488527 84488567 41 GGACGGACGTCAGCAAAGAGGCCGCCAACATGATCCTGGTG GGACGGACGTCAGCAAAGATGCCGCCAACATGATCCTGGTG < 41bp 0.365065000749906 0.71887226586304 NA NA prediction 0.43774453172608 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84488547 chr16:84488546 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_25773 0 0 0 0 1 ATP2C2 chr16:84488590 5'GT 84488590 Upstream 45bp 23517 chr6 7590603 7590603 1 + G T rs551596030 7590604 + 7590584 7590624 41 GTGACCGCGTCCCTGGGCTGGGACCTAGATAGTCTGGATCC GTGACCGCGTCCCTGGGCTTGGACCTAGATAGTCTGGATCC < 41bp 0.396461276310252 0.718867800757632 NA NA prediction 0.437735601515263 Functional Gain - SNRNP48 ENSG00000168566 CDS Human protein_coding chr6:7590604 chr6:7590603 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_25774 0 0 1 0 1 SNRNP48 chr6:7590646 5'GT 7590646 Upstream 44bp 23518 chr15 20496629 20496629 1 + G T LUSC 20496630 + 20496610 20496650 41 GAAAGTGGCCTCATGAAGGGGAAGCCGAGGGTGCCGAGACC GAAAGTGGCCTCATGAAGGTGAAGCCGAGGGTGCCGAGACC < 41bp 0.651742582361428 0.870608288559557 NA NA prediction 0.437731412396258 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20496630 chr15:20496629 . . 0 20 hm7G_associated_SNPs_25776 0 0 0 0 1 CHEK2P2 chr15:20496597 3'AG 20496597 Downstream 33bp 23519 chr19 3155902 3155902 1 + G A rs2074865 3155903 + 3155883 3155923 41 TGATCGCCCTCATCTACCTGGCCTCACTGAGTGAATACGAC TGATCGCCCTCATCTACCTAGCCTCACTGAGTGAATACGAC < 41bp 0.507299906298431 0.726164509960249 NA NA prediction 0.437729207323637 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3155903 chr19:3155902 synonymous SNV . 0 20 hm7G_associated_SNPs_25777 0 0 0 0 2 GNA15 chr19:3155821 3'AG 3155821 Downstream 82bp 23520 chr19 3155902 3155902 1 + G A rs2074865 3155903 + 3155883 3155923 41 TGATCGCCCTCATCTACCTGGCCTCACTGAGTGAATACGAC TGATCGCCCTCATCTACCTAGCCTCACTGAGTGAATACGAC < 41bp 0.507299906298431 0.726164509960249 NA NA prediction 0.437729207323637 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3155903 chr19:3155902 synonymous SNV . 0 20 hm7G_associated_SNPs_25777 0 0 0 0 2 GNA15 chr19:3155950 5'GT 3155950 Upstream 49bp 23521 chr17 7536237 7536237 1 + G T LUAD 7536238 + 7536218 7536258 41 CTCCCCTCCTTAACCTCTGGGCCAAGCCTCAAGGGCGTCTC CTCCCCTCCTTAACCTCTGTGCCAAGCCTCAAGGGCGTCTC < 41bp 0.41778819758878 0.7188581136213 NA NA prediction 0.437716227242601 Functional Gain - SHBG ENSG00000129214 CDS Human protein_coding chr17:7536238 chr17:7536237 nonsynonymous SNV 0.589 3 20 hm7G_associated_SNPs_25778 0 0 0 0 1 SHBG chr17:7536277 5'GT 7536277 Upstream 41bp 23522 chr6 43270099 43270099 1 + G A SKCM 43270100 + 43270080 43270120 41 CGCCGCCTCACGCAAGCTGGGACACTGCTGGGCACGGCCCT CGCCGCCTCACGCAAGCTGAGACACTGCTGGGCACGGCCCT < 41bp 0.499136703486135 0.71885183850141 NA NA prediction 0.43770367700282 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43270100 chr6:43270099 nonsynonymous SNV 0.014 3 20 hm7G_associated_SNPs_25782 0 0 1 0 1 SLC22A7 chr6:43270152 5'GT 43270152 Upstream 54bp 23523 chr11 309089 309089 1 + G T SKCM 309090 + 309070 309110 41 GCCAAGTGCCTGAACATCTGGGCCCTGATTTTGGGCATCTT GCCAAGTGCCTGAACATCTTGGCCCTGATTTTGGGCATCTT < 41bp 0.675646859309935 0.894483876205235 NA NA prediction 0.4376740337906 Functional Gain - IFITM2 ENSG00000185201 CDS Human protein_coding chr11:309090 chr11:309089 nonsynonymous SNV 0.631 1 20 hm7G_associated_SNPs_25785 0 0 1 0 1 IFITM2 chr11:309013 3'AG 309013 Downstream 77bp 23524 chr11 124747921 124747921 1 + G A UCEC 124747922 + 124747902 124747942 41 ATAGCACCATTGACCCAGCGGGGGAGGAGCTGCAGACCTTC ATAGCACCATTGACCCAGCAGGGGAGGAGCTGCAGACCTTC < 41bp 0.498736279789968 0.718822309823933 NA NA prediction 0.437644619647866 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747922 chr11:124747921 synonymous SNV . 0 20 hm7G_associated_SNPs_25786 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 89bp 23525 chr6 30595820 30595820 1 + G T UCEC 30595821 + 30595801 30595841 41 TCTCTTAGGATGATCGTGAGGCTCATAATGAGGTAGAACCA TCTCTTAGGATGATCGTGATGCTCATAATGAGGTAGAACCA < 41bp 0.624206509213766 0.843022481220416 NA NA prediction 0.4376319440133 Functional Gain - ATAT1 ENSG00000137343 CDS Human protein_coding chr6:30595821 chr6:30595820 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25787 0 0 0 0 1 ATAT1 chr6:30595809 3'AG 30595809 Downstream 12bp 23526 chr21 43833250 43833250 1 + G A GBM 43833251 + 43833231 43833271 41 CTCCTCCATCAGCTACCTCGGCTTCTTCGTCAGTGGCAGCC CTCCTCCATCAGCTACCTCAGCTTCTTCGTCAGTGGCAGCC < 41bp 0.496247665425137 0.718808384769028 NA NA prediction 0.437616769538056 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43833251 chr21:43833250 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_25789 0 0 0 0 1 UBASH3A chr21:43833331 5'GT 43833331 Upstream 82bp 23527 chr9 139250810 139250810 1 + G A UCEC 139250811 + 139250791 139250831 41 CAGCCCAGCCCTCGATGACGGCCTCGCCCCAGACCGAGGAA CAGCCCAGCCCTCGATGACAGCCTCGCCCCAGACCGAGGAA < 41bp 0.491789501334607 0.718801925472325 NA NA prediction 0.437603850944651 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139250811 chr9:139250810 synonymous SNV . 0 20 hm7G_associated_SNPs_25791 0 0 0 0 1 GPSM1 chr9:139250794 3'AG 139250794 Downstream 17bp 23528 chrY 6954416 6954416 1 + G A SKCM 6954417 + 6954397 6954437 41 ATCAAGTGGAGCCCCACCGGGCCTGCCACCAGCAACCCAAA ATCAAGTGGAGCCCCACCGAGCCTGCCACCAGCAACCCAAA < 41bp 0.510907253348217 0.729703621572909 NA NA prediction 0.437592736449384 Functional Gain - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6954417 chrY:6954416 nonsynonymous SNV 0.158 3 20 hm7G_associated_SNPs_25793 0 0 0 0 2 TBL1Y chrY:6954331 3'AG 6954331 Downstream 86bp 23529 chrY 6954416 6954416 1 + G A SKCM 6954417 + 6954397 6954437 41 ATCAAGTGGAGCCCCACCGGGCCTGCCACCAGCAACCCAAA ATCAAGTGGAGCCCCACCGAGCCTGCCACCAGCAACCCAAA < 41bp 0.510907253348217 0.729703621572909 NA NA prediction 0.437592736449384 Functional Gain - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6954417 chrY:6954416 nonsynonymous SNV 0.158 3 20 hm7G_associated_SNPs_25793 0 0 0 0 2 TBL1Y chrY:6954458 5'GT 6954458 Upstream 43bp 23530 chr19 3734344 3734344 1 + G A rs148722853 3734345 + 3734325 3734365 41 ACATCTCGGACCTCGCCTCGGAGCTATCGCAGGCACCACCA ACATCTCGGACCTCGCCTCAGAGCTATCGCAGGCACCACCA < 41bp 0.516912020167264 0.735701960298071 NA NA prediction 0.437579880261614 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3734345 chr19:3734344 synonymous SNV . 0 20 hm7G_associated_SNPs_25794 0 0 0 0 2 TJP3 chr19:3734325 3'AG 3734325 Downstream 20bp 23531 chr19 3734344 3734344 1 + G A rs148722853 3734345 + 3734325 3734365 41 ACATCTCGGACCTCGCCTCGGAGCTATCGCAGGCACCACCA ACATCTCGGACCTCGCCTCAGAGCTATCGCAGGCACCACCA < 41bp 0.516912020167264 0.735701960298071 NA NA prediction 0.437579880261614 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3734345 chr19:3734344 synonymous SNV . 0 20 hm7G_associated_SNPs_25794 0 0 0 0 2 TJP3 chr19:3734433 5'GT 3734433 Upstream 90bp 23532 chr1 228210434 228210434 1 + G A PRAD 228210435 + 228210415 228210455 41 TCCTGTGTGCCAGCATCCCGGGCCTGGTCCCCAAGCAGCTC TCCTGTGTGCCAGCATCCCAGGCCTGGTCCCCAAGCAGCTC < 41bp 0.530386162841619 0.749174393230146 NA NA prediction 0.437576460777054 Functional Gain - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228210435 chr1:228210434 synonymous SNV . 0 20 hm7G_associated_SNPs_25795 0 0 0 0 1 WNT3A chr1:228210368 3'AG 228210368 Downstream 67bp 23533 chr4 71462742 71462742 1 + G T UCEC 71462743 + 71462723 71462763 41 CTCAGCAATCTGGAACACCGGGTATGGCTAGTTTGAGCCTT CTCAGCAATCTGGAACACCTGGTATGGCTAGTTTGAGCCTT < 41bp 0.668334437014842 0.887102634215615 NA NA prediction 0.437536394401547 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71462743 chr4:71462742 synonymous SNV . 0 20 hm7G_associated_SNPs_25798 0 0 0 0 2 AMBN chr4:71462716 3'AG 71462716 Downstream 27bp 23534 chr4 71462742 71462742 1 + G T UCEC 71462743 + 71462723 71462763 41 CTCAGCAATCTGGAACACCGGGTATGGCTAGTTTGAGCCTT CTCAGCAATCTGGAACACCTGGTATGGCTAGTTTGAGCCTT < 41bp 0.668334437014842 0.887102634215615 NA NA prediction 0.437536394401547 Functional Gain - AMBN ENSG00000178522 CDS Human protein_coding chr4:71462743 chr4:71462742 synonymous SNV . 0 20 hm7G_associated_SNPs_25798 0 0 0 0 2 AMBN chr4:71462766 5'GT 71462766 Upstream 25bp 23535 chr19 11474874 11474874 1 + G A SKCM 11474875 + 11474855 11474895 41 CCGCATTCGACACCGGCACGGCTCACCCCATCCAGTGAGTG CCGCATTCGACACCGGCACAGCTCACCCCATCCAGTGAGTG < 41bp 0.524962211344457 0.743711986763449 NA NA prediction 0.437499550837984 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474875 chr19:11474874 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25802 0 0 1 0 2 PLPPR2 chr19:11474837 3'AG 11474837 Downstream 38bp 23536 chr19 11474874 11474874 1 + G A SKCM 11474875 + 11474855 11474895 41 CCGCATTCGACACCGGCACGGCTCACCCCATCCAGTGAGTG CCGCATTCGACACCGGCACAGCTCACCCCATCCAGTGAGTG < 41bp 0.524962211344457 0.743711986763449 NA NA prediction 0.437499550837984 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474875 chr19:11474874 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_25802 0 0 1 0 2 PLPPR2 chr19:11474888 5'GT 11474888 Upstream 15bp 23537 chr6 117589642 117589642 1 + G T LUSC 117589643 + 117589623 117589663 41 CAAAGCACCAAGGAGCTCTGGGCCCTGGCGAGGTGAGTATA CAAAGCACCAAGGAGCTCTTGGCCCTGGCGAGGTGAGTATA < 41bp 0.688288201953786 0.907035784017082 NA NA prediction 0.437495164126592 Functional Gain - VGLL2 ENSG00000170162 CDS Human protein_coding chr6:117589643 chr6:117589642 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_25803 0 0 0 0 1 VGLL2 chr6:117589654 5'GT 117589654 Upstream 13bp 23538 chr15 40462263 40462263 1 + G T UCEC 40462264 + 40462244 40462284 41 TTTTCTGTTTACATTTCAGGGCATTTGAATATGAAATTCGA TTTTCTGTTTACATTTCAGTGCATTTGAATATGAAATTCGA < 41bp 0.386826187301014 0.718738596061554 NA NA prediction 0.437477192123107 Functional Gain - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40462264 chr15:40462263 synonymous SNV . 0 20 hm7G_associated_SNPs_25804 0 0 1 0 2 BUB1B chr15:40462263 3'AG 40462263 Downstream 1bp 23539 chr15 40462263 40462263 1 + G T UCEC 40462264 + 40462244 40462284 41 TTTTCTGTTTACATTTCAGGGCATTTGAATATGAAATTCGA TTTTCTGTTTACATTTCAGTGCATTTGAATATGAAATTCGA < 41bp 0.386826187301014 0.718738596061554 NA NA prediction 0.437477192123107 Functional Gain - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40462264 chr15:40462263 synonymous SNV . 0 20 hm7G_associated_SNPs_25804 0 0 1 0 2 BUB1B chr15:40462322 5'GT 40462322 Upstream 60bp 23540 chr17 26851530 26851530 1 + G A BLCA 26851531 + 26851511 26851551 41 GTCTACCCAGAAGCATGCCGGCTTCAGCTGCTCGTCATTTG GTCTACCCAGAAGCATGCCAGCTTCAGCTGCTCGTCATTTG < 41bp 0.501921518015528 0.720659396350184 NA NA prediction 0.437475756669312 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851531 chr17:26851530 nonsynonymous SNV 0.973 0 20 hm7G_associated_SNPs_25805 0 0 0 0 1 FOXN1 chr17:26851521 3'AG 26851521 Downstream 10bp 23541 chr14 60749475 60749475 1 + G T LUAD 60749476 + 60749456 60749496 41 AGCATAATGCCCAGGGGCAGGGTAATGGGTTGCGATATGGG AGCATAATGCCCAGGGGCATGGTAATGGGTTGCGATATGGG < 41bp 0.668160298067404 0.886895678167675 NA NA prediction 0.437470760200542 Functional Gain - PPM1A ENSG00000100614 CDS Human protein_coding chr14:60749476 chr14:60749475 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_25806 0 0 1 0 1 PPM1A chr14:60749402 3'AG 60749402 Downstream 74bp 23542 chr1 177225143 177225143 1 + C T UCEC 177225144 + 177225124 177225164 41 TCTTGCCCCAGAGTTTATCCGGAACATTCGCCTCCTTGGAA TCTTGCCCCAGAGTTTATCTGGAACATTCGCCTCCTTGGAA < 41bp 0.50010084433066 0.718835263694991 NA NA prediction 0.437468838728663 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177225144 chr1:177225143 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_25808 0 0 0 0 1 BRINP2 chr1:177225055 3'AG 177225055 Downstream 89bp 23543 chr20 61929342 61929342 1 + G A PRAD 61929343 + 61929323 61929363 41 GTCGGAGGGGAGCGGCCTCGGCTACCTGGTGCAGGTGAAGC GTCGGAGGGGAGCGGCCTCAGCTACCTGGTGCAGGTGAAGC < 41bp 0.52533877482343 0.744058566203643 NA NA prediction 0.437439582760426 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61929343 chr20:61929342 nonsynonymous SNV 0.046 3 20 hm7G_associated_SNPs_25809 0 0 1 0 2 COL20A1 chr20:61929262 3'AG 61929262 Downstream 81bp 23544 chr20 61929342 61929342 1 + G A PRAD 61929343 + 61929323 61929363 41 GTCGGAGGGGAGCGGCCTCGGCTACCTGGTGCAGGTGAAGC GTCGGAGGGGAGCGGCCTCAGCTACCTGGTGCAGGTGAAGC < 41bp 0.52533877482343 0.744058566203643 NA NA prediction 0.437439582760426 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61929343 chr20:61929342 nonsynonymous SNV 0.046 3 20 hm7G_associated_SNPs_25809 0 0 1 0 2 COL20A1 chr20:61929372 5'GT 61929372 Upstream 31bp 23545 chr1 31882695 31882695 1 + G T UCEC 31882696 + 31882676 31882716 41 TGAGTCCTCATGGACGGGAGGATGGTAAGAGGGGATGGGGA TGAGTCCTCATGGACGGGATGATGGTAAGAGGGGATGGGGA < 41bp 0.654293328131178 0.873010775419054 NA NA prediction 0.437434894575752 Functional Gain - SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31882696 chr1:31882695 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_25810 0 0 0 0 1 SERINC2 chr1:31882699 5'GT 31882699 Upstream 5bp 23546 chr17 7611350 7611350 1 + G A CESC 7611351 + 7611331 7611371 41 CTGCTCTGCCCCCGGGCCCGGCCTCCTGGCCCTCACTCCTC CTGCTCTGCCCCCGGGCCCAGCCTCCTGGCCCTCACTCCTC < 41bp 0.528399758516384 0.747115854088924 NA NA prediction 0.437432191145078 Functional Gain - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7611351 chr17:7611350 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_25811 0 0 1 0 1 EFNB3 chr17:7611276 3'AG 7611276 Downstream 75bp 23547 chr9 66457292 66457292 1 + G T UCEC 66457293 + 66457273 66457313 41 GGAGGGGGAAGTAGAGAAAGGGAGAGGGTGAGGGAGTTGTG GGAGGGGGAAGTAGAGAAATGGAGAGGGTGAGGGAGTTGTG < 41bp 0.659621629829554 0.878322407340891 NA NA prediction 0.437401555022675 Functional Gain - LINC01410 ENSG00000238113 ncRNA_exonic Human lincRNA chr9:66457293 chr9:66457292 . . 0 20 hm7G_associated_SNPs_25812 0 0 0 0 1 LINC01410 chr9:66457355 5'GT 66457355 Upstream 64bp 23548 chr11 20623184 20623184 1 + G A CESC 20623185 + 20623165 20623205 41 GAATCACGTCCGTGCTCCCGGGCAGCGTGGCCACCGTTGCC GAATCACGTCCGTGCTCCCAGGCAGCGTGGCCACCGTTGCC < 41bp 0.508860157727754 0.72755212039097 NA NA prediction 0.437383925326433 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20623185 chr11:20623184 synonymous SNV . 0 20 hm7G_associated_SNPs_25814 0 0 0 0 1 SLC6A5 chr11:20623211 5'GT 20623211 Upstream 28bp 23549 chr16 28997753 28997753 1 + G A UCEC 28997754 + 28997734 28997774 41 CGGACGCCATCTTCCCGGCGGGATTCTGATGGTGGTAAGTG CGGACGCCATCTTCCCGGCAGGATTCTGATGGTGGTAAGTG < 41bp 0.52807824672028 0.746757659031651 NA NA prediction 0.437358824622741 Functional Gain - LAT ENSG00000213658 CDS Human protein_coding chr16:28997754 chr16:28997753 nonsynonymous SNV 0.696 0 20 hm7G_associated_SNPs_25816 0 0 0 0 3 LAT chr16:28997703 3'AG 28997703 Downstream 51bp 23550 chr16 28997753 28997753 1 + G A UCEC 28997754 + 28997734 28997774 41 CGGACGCCATCTTCCCGGCGGGATTCTGATGGTGGTAAGTG CGGACGCCATCTTCCCGGCAGGATTCTGATGGTGGTAAGTG < 41bp 0.52807824672028 0.746757659031651 NA NA prediction 0.437358824622741 Functional Gain - LAT ENSG00000213658 CDS Human protein_coding chr16:28997754 chr16:28997753 nonsynonymous SNV 0.696 0 20 hm7G_associated_SNPs_25816 0 0 0 0 3 LAT chr16:28997706 3'AG 28997706 Downstream 48bp 23551 chr16 28997753 28997753 1 + G A UCEC 28997754 + 28997734 28997774 41 CGGACGCCATCTTCCCGGCGGGATTCTGATGGTGGTAAGTG CGGACGCCATCTTCCCGGCAGGATTCTGATGGTGGTAAGTG < 41bp 0.52807824672028 0.746757659031651 NA NA prediction 0.437358824622741 Functional Gain - LAT ENSG00000213658 CDS Human protein_coding chr16:28997754 chr16:28997753 nonsynonymous SNV 0.696 0 20 hm7G_associated_SNPs_25816 0 0 0 0 3 LAT chr16:28997767 5'GT 28997767 Upstream 15bp 23552 chr16 28909415 28909415 1 + G A COAD 28909416 + 28909396 28909436 41 TCCCCAGCCAAATCTTCCCGGGCTGCTGTGGGCAACAAGAT TCCCCAGCCAAATCTTCCCAGGCTGCTGTGGGCAACAAGAT < 41bp 0.502627768416233 0.721304140450186 NA NA prediction 0.437352744067905 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909416 chr16:28909415 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_25817 0 0 1 0 2 ATP2A1 chr16:28909321 3'AG 28909321 Downstream 95bp 23553 chr16 28909415 28909415 1 + G A COAD 28909416 + 28909396 28909436 41 TCCCCAGCCAAATCTTCCCGGGCTGCTGTGGGCAACAAGAT TCCCCAGCCAAATCTTCCCAGGCTGCTGTGGGCAACAAGAT < 41bp 0.502627768416233 0.721304140450186 NA NA prediction 0.437352744067905 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28909416 chr16:28909415 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_25817 0 0 1 0 2 ATP2A1 chr16:28909446 5'GT 28909446 Upstream 32bp 23554 chr19 7607555 7607555 1 + G A STAD 7607556 + 7607536 7607576 41 TCCCTGGCAGCCCCCGCTCGGGTAAGGCTTGGGACCCTGCC TCCCTGGCAGCCCCCGCTCAGGTAAGGCTTGGGACCCTGCC < 41bp 0.507149316407885 0.72581892343047 NA NA prediction 0.437339214045171 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7607556 chr19:7607555 nonsynonymous SNV 0.142 2 20 hm7G_associated_SNPs_25818 0 0 0 0 1 PNPLA6 chr19:7607556 5'GT 7607556 Upstream 2bp 23555 chr5 1009656 1009656 1 + G A rs111793386 1009657 + 1009637 1009677 41 GGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAGGT GGCGCGGAGGAAGCGGAGCAGCGCGCGCGGGACAAGCAGGT < 41bp 0.519080640806016 0.737746696996035 NA NA prediction 0.437332112380038 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1009657 chr5:1009656 nonsynonymous SNV 0.830 1 20 hm7G_associated_SNPs_25819 0 0 0 0 2 NKD2 chr5:1009596 3'AG 1009596 Downstream 61bp 23556 chr5 1009656 1009656 1 + G A rs111793386 1009657 + 1009637 1009677 41 GGCGCGGAGGAAGCGGAGCGGCGCGCGCGGGACAAGCAGGT GGCGCGGAGGAAGCGGAGCAGCGCGCGCGGGACAAGCAGGT < 41bp 0.519080640806016 0.737746696996035 NA NA prediction 0.437332112380038 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1009657 chr5:1009656 nonsynonymous SNV 0.830 1 20 hm7G_associated_SNPs_25819 0 0 0 0 2 NKD2 chr5:1009675 5'GT 1009675 Upstream 20bp 23557 chr16 58287994 58287994 1 + G T UCEC 58287995 + 58287975 58288015 41 TTGAGCTGGTACAAAAAGAGGTTGCGGACATGAAGGATGAC TTGAGCTGGTACAAAAAGATGTTGCGGACATGAAGGATGAC < 41bp 0.678454445208701 0.897114670218782 NA NA prediction 0.437320450020162 Functional Gain - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58287995 chr16:58287994 nonsynonymous SNV 0.887 4 20 hm7G_associated_SNPs_25820 0 0 0 0 2 CCDC113 chr16:58287902 3'AG 58287902 Downstream 93bp 23558 chr16 58287994 58287994 1 + G T UCEC 58287995 + 58287975 58288015 41 TTGAGCTGGTACAAAAAGAGGTTGCGGACATGAAGGATGAC TTGAGCTGGTACAAAAAGATGTTGCGGACATGAAGGATGAC < 41bp 0.678454445208701 0.897114670218782 NA NA prediction 0.437320450020162 Functional Gain - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58287995 chr16:58287994 nonsynonymous SNV 0.887 4 20 hm7G_associated_SNPs_25820 0 0 0 0 2 CCDC113 chr16:58288063 5'GT 58288063 Upstream 70bp 23559 chr1 87043670 87043670 1 + G T LIHC 87043671 + 87043651 87043691 41 GATATAGCTTAAAAGTTCGGGCTCATGGAGGAGCAAACACT GATATAGCTTAAAAGTTCGTGCTCATGGAGGAGCAAACACT < 41bp 0.678508431362056 0.897164894310665 NA NA prediction 0.437312925897218 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87043671 chr1:87043670 synonymous SNV . 0 20 hm7G_associated_SNPs_25821 0 0 0 0 2 CLCA4 chr1:87043585 3'AG 87043585 Downstream 86bp 23560 chr1 87043670 87043670 1 + G T LIHC 87043671 + 87043651 87043691 41 GATATAGCTTAAAAGTTCGGGCTCATGGAGGAGCAAACACT GATATAGCTTAAAAGTTCGTGCTCATGGAGGAGCAAACACT < 41bp 0.678508431362056 0.897164894310665 NA NA prediction 0.437312925897218 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87043671 chr1:87043670 synonymous SNV . 0 20 hm7G_associated_SNPs_25821 0 0 0 0 2 CLCA4 chr1:87043755 5'GT 87043755 Upstream 86bp 23561 chr16 28898764 28898764 1 + G A OV 28898765 + 28898745 28898785 41 GGGCACCAACATTGCAGCCGGCAAGGCCTTGGGCATCGTGG GGGCACCAACATTGCAGCCAGCAAGGCCTTGGGCATCGTGG < 41bp 0.546693675803583 0.765349216771839 NA NA prediction 0.437311081936512 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28898765 chr16:28898764 nonsynonymous SNV 0.962 5 20 hm7G_associated_SNPs_25822 0 0 1 0 1 ATP2A1 chr16:28898746 3'AG 28898746 Downstream 19bp 23562 chr2 219487513 219487513 1 + G T LUAD 219487514 + 219487494 219487534 41 TGACTCTGCTGGAATTTTTGGATTTCCTCCAAGAGGAGCAG TGACTCTGCTGGAATTTTTTGATTTCCTCCAAGAGGAGCAG < 41bp 0.376756253953189 0.718654798609456 NA NA prediction 0.437309597218913 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219487514 chr2:219487513 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_25823 0 0 0 0 1 PLCD4 chr2:219487601 5'GT 219487601 Upstream 89bp 23563 chr1 95322901 95322901 1 + G T UCEC 95322902 + 95322882 95322922 41 AAACTTTAGGAGCTGCCCAGGTTATGGAAGGCGGCCAAGTG AAACTTTAGGAGCTGCCCATGTTATGGAAGGCGGCCAAGTG < 41bp 0.669930844731168 0.888585441766204 NA NA prediction 0.437309194070072 Functional Gain - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95322902 chr1:95322901 nonsynonymous SNV 0.942 0 20 hm7G_associated_SNPs_25824 0 0 0 1 1 SLC44A3 chr1:95322891 3'AG 95322891 Downstream 11bp 23564 chr16 57719769 57719769 1 + G A SKCM 57719770 + 57719750 57719790 41 CCTGGTGGGTGTGACATGGGGGTTGGCCATCTTCACCCCGT CCTGGTGGGTGTGACATGGAGGTTGGCCATCTTCACCCCGT < 41bp 0.52530043765454 0.74395096899167 NA NA prediction 0.43730106267426 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57719770 chr16:57719769 nonsynonymous SNV 0.747 3 20 hm7G_associated_SNPs_25826 0 0 0 0 1 ADGRG3 chr16:57719838 5'GT 57719838 Upstream 70bp 23565 chr12 56332752 56332752 1 + G T LUSC 56332753 + 56332733 56332773 41 TGGCTGAATACCTGGATTGGGATGTGTCTGAGCTGAGGCCG TGGCTGAATACCTGGATTGTGATGTGTCTGAGCTGAGGCCG < 41bp 0.580346740745168 0.798992270442058 NA NA prediction 0.437291059393781 Functional Gain - DGKA ENSG00000065357 CDS Human protein_coding chr12:56332753 chr12:56332752 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25827 0 0 1 0 2 DGKA chr12:56332699 3'AG 56332699 Downstream 54bp 23566 chr12 56332752 56332752 1 + G T LUSC 56332753 + 56332733 56332773 41 TGGCTGAATACCTGGATTGGGATGTGTCTGAGCTGAGGCCG TGGCTGAATACCTGGATTGTGATGTGTCTGAGCTGAGGCCG < 41bp 0.580346740745168 0.798992270442058 NA NA prediction 0.437291059393781 Functional Gain - DGKA ENSG00000065357 CDS Human protein_coding chr12:56332753 chr12:56332752 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25827 0 0 1 0 2 DGKA chr12:56332773 5'GT 56332773 Upstream 22bp 23567 chr11 89892474 89892474 1 + G T ACC 89892475 + 89892455 89892495 41 TAATGTGAGTTATAGTATCGGACCTGGCTTTACAGGGAGTG TAATGTGAGTTATAGTATCTGACCTGGCTTTACAGGGAGTG < 41bp 0.39248369362368 0.718643626318233 NA NA prediction 0.437287252636465 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89892475 chr11:89892474 stopgain 0.928 1 20 hm7G_associated_SNPs_25828 0 0 0 0 1 NAALAD2 chr11:89892407 3'AG 89892407 Downstream 68bp 23568 chr11 20623154 20623154 1 + G A BLCA 20623155 + 20623135 20623175 41 GCCAGAGCACCGTGGTGCTGGCCACGGATGGAATCACGTCC GCCAGAGCACCGTGGTGCTAGCCACGGATGGAATCACGTCC < 41bp 0.531041069936424 0.749684344362727 NA NA prediction 0.437286548852606 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20623155 chr11:20623154 synonymous SNV . 0 20 hm7G_associated_SNPs_25829 0 0 0 0 1 SLC6A5 chr11:20623211 5'GT 20623211 Upstream 58bp 23569 chrX 55777611 55777611 1 + G T LUAD 55777612 + 55777592 55777632 41 GTTTCCGAACATCTATCTGGGATGAAACCCTCTATAAGGTG GTTTCCGAACATCTATCTGTGATGAAACCCTCTATAAGGTG < 41bp 0.388353448219046 0.718624645075456 NA NA prediction 0.437249290150913 Functional Gain - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55777612 chrX:55777611 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25831 0 0 1 0 2 RRAGB chrX:55777534 3'AG 55777534 Downstream 78bp 23570 chrX 55777611 55777611 1 + G T LUAD 55777612 + 55777592 55777632 41 GTTTCCGAACATCTATCTGGGATGAAACCCTCTATAAGGTG GTTTCCGAACATCTATCTGTGATGAAACCCTCTATAAGGTG < 41bp 0.388353448219046 0.718624645075456 NA NA prediction 0.437249290150913 Functional Gain - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55777612 chrX:55777611 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25831 0 0 1 0 2 RRAGB chrX:55777629 5'GT 55777629 Upstream 19bp 23571 chr5 2752758 2752758 1 + G T STAD 2752759 + 2752739 2752779 41 TGTGTTGTCAAAACACTGGGGGGATGATTGTTACCTGACAA TGTGTTGTCAAAACACTGGTGGGATGATTGTTACCTGACAA < 41bp 0.384845133362428 0.718608053345973 NA NA prediction 0.437216106691947 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2752759 chr5:2752758 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_25833 0 0 0 0 1 C5orf38 chr5:2752736 3'AG 2752736 Downstream 23bp 23572 chr9 127561572 127561572 1 + G A SKCM 127561573 + 127561553 127561593 41 CCCCTCCGCAGAGCATCAAGGCCAACCTGAGCCGGGAGAAT CCCCTCCGCAGAGCATCAAAGCCAACCTGAGCCGGGAGAAT < 41bp 0.526969882299747 0.745573345148146 NA NA prediction 0.437206925696798 Functional Gain - OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127561573 chr9:127561572 synonymous SNV . 0 20 hm7G_associated_SNPs_25835 0 0 0 0 1 OLFML2A chr9:127561564 3'AG 127561564 Downstream 9bp 23573 chr1 228003503 228003503 1 + G A UCEC 228003504 + 228003484 228003524 41 CTGGTGGTGGCCCCTCCCCGGGTCGCAGCATTGGTCCACAG CTGGTGGTGGCCCCTCCCCAGGTCGCAGCATTGGTCCACAG < 41bp 0.515355501841856 0.73395242999567 NA NA prediction 0.437193856307628 Functional Gain - PRSS38 ENSG00000185888 CDS Human protein_coding chr1:228003504 chr1:228003503 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_25836 0 0 0 0 1 PRSS38 chr1:228003565 5'GT 228003565 Upstream 63bp 23574 chr1 201190657 201190657 1 + G T STAD 201190658 + 201190638 201190678 41 GGGCTGGGCCAGACACCCAGGAAGGGGATGAAGCCCAGGGG GGGCTGGGCCAGACACCCATGAAGGGGATGAAGCCCAGGGG < 41bp 0.376503338444948 0.718595220750718 NA NA prediction 0.437190441501436 Functional Gain - IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201190658 chr1:201190657 nonsynonymous SNV 0.007 2 20 hm7G_associated_SNPs_25837 0 0 0 0 1 IGFN1 chr1:201190572 3'AG 201190572 Downstream 86bp 23575 chr11 73076806 73076806 1 + G A STAD 73076807 + 73076787 73076827 41 TGAGGAGCTGCTGTGGGTGGGCACCAGTGCTGGTGTCGTCC TGAGGAGCTGCTGTGGGTGAGCACCAGTGCTGGTGTCGTCC < 41bp 0.499380795986953 0.718586858207834 NA NA prediction 0.437173716415667 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73076807 chr11:73076806 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25838 0 0 1 0 1 ARHGEF17 chr11:73076723 3'AG 73076723 Downstream 84bp 23576 chrX 55248257 55248257 1 + G T GBM 55248258 + 55248238 55248278 41 ACCACCAACTGATAATCAGGGTATTGCACCTAGTGGGGAGA ACCACCAACTGATAATCAGTGTATTGCACCTAGTGGGGAGA < 41bp 0.388399868935117 0.718585507724606 NA NA prediction 0.437171015449212 Functional Gain - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55248258 chrX:55248257 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_25839 0 0 0 0 2 PAGE5 chrX:55248200 3'AG 55248200 Downstream 58bp 23577 chrX 55248257 55248257 1 + G T GBM 55248258 + 55248238 55248278 41 ACCACCAACTGATAATCAGGGTATTGCACCTAGTGGGGAGA ACCACCAACTGATAATCAGTGTATTGCACCTAGTGGGGAGA < 41bp 0.388399868935117 0.718585507724606 NA NA prediction 0.437171015449212 Functional Gain - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55248258 chrX:55248257 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_25839 0 0 0 0 2 PAGE5 chrX:55248308 5'GT 55248308 Upstream 52bp 23578 chr9 138415133 138415133 1 + G A KIRC 138415134 + 138415114 138415154 41 GGAGAAAACTGACGAGCCGGGAAAATACACGGCCGGTGAGT GGAGAAAACTGACGAGCCGAGAAAATACACGGCCGGTGAGT < 41bp 0.513425710489002 0.732006028013594 NA NA prediction 0.437160635049183 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415134 chr9:138415133 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_25840 0 0 0 0 2 LCN1 chr9:138415078 3'AG 138415078 Downstream 56bp 23579 chr9 138415133 138415133 1 + G A KIRC 138415134 + 138415114 138415154 41 GGAGAAAACTGACGAGCCGGGAAAATACACGGCCGGTGAGT GGAGAAAACTGACGAGCCGAGAAAATACACGGCCGGTGAGT < 41bp 0.513425710489002 0.732006028013594 NA NA prediction 0.437160635049183 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415134 chr9:138415133 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_25840 0 0 0 0 2 LCN1 chr9:138415148 5'GT 138415148 Upstream 16bp 23580 chr3 14706567 14706567 1 + G T BLCA 14706568 + 14706548 14706588 41 GACTCTTTGGGGCGTTCCCGGCGCTGTATGAGAAAGGATTT GACTCTTTGGGGCGTTCCCTGCGCTGTATGAGAAAGGATTT < 41bp 0.68457130145351 0.903149261732027 NA NA prediction 0.437155920557033 Functional Gain - CCDC174 ENSG00000154781 CDS Human protein_coding chr3:14706568 chr3:14706567 nonsynonymous SNV 0.878 4 20 hm7G_associated_SNPs_25841 0 0 1 0 1 CCDC174 chr3:14706630 5'GT 14706630 Upstream 64bp 23581 chr3 113003265 113003265 1 + G A UCEC 113003266 + 113003246 113003286 41 GCCATTGGGAGGACTCCCAGGCCACCAGGCCAGTGGACAGC GCCATTGGGAGGACTCCCAAGCCACCAGGCCAGTGGACAGC < 41bp 0.4923219195589 0.718568044228402 NA NA prediction 0.437136088456803 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:113003266 chr3:113003265 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_25844 0 0 0 0 1 BOC chr3:113003182 3'AG 113003182 Downstream 84bp 23582 chr18 72163592 72163592 1 + G A rs6566811 72163593 + 72163573 72163613 41 AGCGCCGGGGGTCGTGGCCGGGACACGTGGTACGGAACCGG AGCGCCGGGGGTCGTGGCCAGGACACGTGGTACGGAACCGG < 41bp 0.507473968171071 0.726039754706073 NA NA prediction 0.437131573070004 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72163593 chr18:72163592 nonsynonymous SNV 0.603 0 20 hm7G_associated_SNPs_25845 0 0 0 0 1 CNDP2 chr18:72163666 5'GT 72163666 Upstream 75bp 23583 chr17 39975584 39975584 1 + G A rs372214186 39975585 + 39975565 39975605 41 CGGCTGTGTCCGCAGAGCCGGGGCCGGGGACTTCATGCGCT CGGCTGTGTCCGCAGAGCCAGGGCCGGGGACTTCATGCGCT < 41bp 0.51397115826303 0.732525682276692 NA NA prediction 0.437109048027325 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39975585 chr17:39975584 nonsynonymous SNV 0.428 1 20 hm7G_associated_SNPs_25846 0 0 1 0 1 FKBP10 chr17:39975651 5'GT 39975651 Upstream 68bp 23584 chr2 3660962 3660962 1 + G T COAD 3660963 + 3660943 3660983 41 CTGGAAGAGTCGGCCCCACGGGAGAAAAAGGTACCTGCAGC CTGGAAGAGTCGGCCCCACTGGAGAAAAAGGTACCTGCAGC < 41bp 0.598462112947888 0.817014755787251 NA NA prediction 0.437105285678726 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660963 chr2:3660962 nonsynonymous SNV 0.926 1 20 hm7G_associated_SNPs_25847 0 0 0 0 2 COLEC11 chr2:3660901 3'AG 3660901 Downstream 62bp 23585 chr2 3660962 3660962 1 + G T COAD 3660963 + 3660943 3660983 41 CTGGAAGAGTCGGCCCCACGGGAGAAAAAGGTACCTGCAGC CTGGAAGAGTCGGCCCCACTGGAGAAAAAGGTACCTGCAGC < 41bp 0.598462112947888 0.817014755787251 NA NA prediction 0.437105285678726 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660963 chr2:3660962 nonsynonymous SNV 0.926 1 20 hm7G_associated_SNPs_25847 0 0 0 0 2 COLEC11 chr2:3660972 5'GT 3660972 Upstream 11bp 23586 chr6 43220491 43220491 1 + G T LUSC 43220492 + 43220472 43220512 41 CATAGCTGAAAAAGATCGGGGGCGGGGGCTTTGGTGAGATC CATAGCTGAAAAAGATCGGTGGCGGGGGCTTTGGTGAGATC < 41bp 0.363542074210125 0.718544942771076 NA NA prediction 0.437089885542153 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43220492 chr6:43220491 synonymous SNV . 0 20 hm7G_associated_SNPs_25849 0 0 0 0 1 TTBK1 chr6:43220477 3'AG 43220477 Downstream 15bp 23587 chr16 818461 818461 1 + G A UCEC 818462 + 818442 818482 41 GAGCGGCACCGCCCGGTGCGGGACTGGATCCTACGGCAGCG GAGCGGCACCGCCCGGTGCAGGACTGGATCCTACGGCAGCG < 41bp 0.491727864435257 0.71853248675176 NA NA prediction 0.437064973503519 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:818462 chr16:818461 nonsynonymous SNV 0.034 0 20 hm7G_associated_SNPs_25850 0 0 1 0 1 MSLN chr16:818379 3'AG 818379 Downstream 83bp 23588 chr12 122398550 122398550 1 + G T COAD 122398551 + 122398531 122398571 41 GAAATGGACAGAGGGTCTGGGAGTACTTAGCAAGACTTCGC GAAATGGACAGAGGGTCTGTGAGTACTTAGCAAGACTTCGC < 41bp 0.375361835237341 0.718530392711849 NA NA prediction 0.437060785423699 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122398551 chr12:122398550 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_25851 0 0 1 0 1 WDR66 chr12:122398491 3'AG 122398491 Downstream 60bp 23589 chr8 95686684 95686684 1 + G T LUAD 95686685 + 95686665 95686705 41 ATGAACTTTGTGTTAATGGGGGGCACTTTAAATCGAAATGG ATGAACTTTGTGTTAATGGTGGGCACTTTAAATCGAAATGG < 41bp 0.3840307106428 0.71852321983398 NA NA prediction 0.437046439667961 Functional Gain - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95686685 chr8:95686684 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25854 0 0 0 0 2 ESRP1 chr8:95686722 5'GT 95686722 Upstream 39bp 23590 chr8 95686684 95686684 1 + G T LUAD 95686685 + 95686665 95686705 41 ATGAACTTTGTGTTAATGGGGGGCACTTTAAATCGAAATGG ATGAACTTTGTGTTAATGGTGGGCACTTTAAATCGAAATGG < 41bp 0.3840307106428 0.71852321983398 NA NA prediction 0.437046439667961 Functional Gain - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95686685 chr8:95686684 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25854 0 0 0 0 2 ESRP1 chr8:95686734 5'GT 95686734 Upstream 51bp 23591 chr16 30762555 30762555 1 + G A UCEC 30762556 + 30762536 30762576 41 GAGGTGCGGGAAGCCACACGGCGAGAGACACACATCCTTCG GAGGTGCGGGAAGCCACACAGCGAGAGACACACATCCTTCG < 41bp 0.502752274877216 0.72127514000912 NA NA prediction 0.437045730263808 Functional Gain - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30762556 chr16:30762555 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_25856 0 0 1 0 1 PHKG2 chr16:30762602 5'GT 30762602 Upstream 48bp 23592 chr2 233409127 233409127 1 + G A SKCM 233409128 + 233409108 233409148 41 GGATGCACGTTCGCCCGCTGGCCCCGGCAGCTGTGCAGGAC GGATGCACGTTCGCCCGCTAGCCCCGGCAGCTGTGCAGGAC < 41bp 0.54501926500145 0.763534019004805 NA NA prediction 0.437029508006709 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233409128 chr2:233409127 synonymous SNV . 0 20 hm7G_associated_SNPs_25858 0 0 0 0 1 CHRNG chr2:233409077 3'AG 233409077 Downstream 51bp 23593 chr1 221055663 221055663 1 + G A LUSC 221055664 + 221055644 221055684 41 CGGACCGAAAGCAGCTGGCGGCGATGCTGGGCCTCACGGAC CGGACCGAAAGCAGCTGGCAGCGATGCTGGGCCTCACGGAC < 41bp 0.511023937272015 0.729538124960412 NA NA prediction 0.437028375376794 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221055664 chr1:221055663 synonymous SNV . 0 20 hm7G_associated_SNPs_25859 0 0 1 0 1 HLX chr1:221055690 5'GT 221055690 Upstream 28bp 23594 chr2 64112782 64112782 1 + G T UCEC 64112783 + 64112763 64112803 41 AAGGACGTGTCTTACTCAGGGGAAAATACAGAAGCTTGGTA AAGGACGTGTCTTACTCAGTGGAAAATACAGAAGCTTGGTA < 41bp 0.677202872125518 0.895700840731437 NA NA prediction 0.436995937211837 Functional Gain - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64112783 chr2:64112782 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_25863 0 0 1 0 1 UGP2 chr2:64112723 3'AG 64112723 Downstream 60bp 23595 chr14 95110002 95110002 1 + G T LUAD 95110003 + 95109983 95110023 41 TCTTCATCTTCCCCAACAGGGGCAAGATGAGGCAGCTGGAA TCTTCATCTTCCCCAACAGTGGCAAGATGAGGCAGCTGGAA < 41bp 0.65947854243598 0.877967075626395 NA NA prediction 0.436977066380831 Functional Gain - SERPINA13P ENSG00000187483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr14:95110003 chr14:95110002 . . 0 20 hm7G_associated_SNPs_25864 0 0 0 0 1 SERPINA13P chr14:95110076 5'GT 95110076 Upstream 75bp 23596 chr12 57389032 57389032 1 + G A LUAD 57389033 + 57389013 57389053 41 GGGGGCCTGGCCCCTCGGAGGGGGTCACCGCAGTGCCTACC GGGGGCCTGGCCCCTCGGAAGGGGTCACCGCAGTGCCTACC < 41bp 0.489552589913269 0.718479373544702 NA NA prediction 0.436958747089404 Functional Gain - GPR182 ENSG00000166856 CDS Human protein_coding chr12:57389033 chr12:57389032 synonymous SNV . 0 20 hm7G_associated_SNPs_25866 0 0 0 0 1 GPR182 chr12:57388978 3'AG 57388978 Downstream 55bp 23597 chr1 200877950 200877950 1 + G A SKCM 200877951 + 200877931 200877971 41 TGAGGGTCTGCAGCCAACAGGACCTGAGGCTGGGAGCCCAG TGAGGGTCTGCAGCCAACAAGACCTGAGGCTGGGAGCCCAG < 41bp 0.507062965816774 0.725541836122025 NA NA prediction 0.436957740610502 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200877951 chr1:200877950 nonsynonymous SNV 0.972 0 20 hm7G_associated_SNPs_25867 0 0 0 0 1 C1orf106 chr1:200877858 3'AG 200877858 Downstream 93bp 23598 chr19 4491805 4491805 1 + G T LUAD 4491806 + 4491786 4491826 41 CGGTCCGGGCGCCACGGAGGGGCCCTCTGGGGGGACGGAAA CGGTCCGGGCGCCACGGAGTGGCCCTCTGGGGGGACGGAAA < 41bp 0.689677485667056 0.908156141749624 NA NA prediction 0.436957312165136 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4491806 chr19:4491805 nonsynonymous SNV 0.521 2 20 hm7G_associated_SNPs_25868 0 0 1 0 2 HDGFL2 chr19:4491761 3'AG 4491761 Downstream 45bp 23599 chr19 4491805 4491805 1 + G T LUAD 4491806 + 4491786 4491826 41 CGGTCCGGGCGCCACGGAGGGGCCCTCTGGGGGGACGGAAA CGGTCCGGGCGCCACGGAGTGGCCCTCTGGGGGGACGGAAA < 41bp 0.689677485667056 0.908156141749624 NA NA prediction 0.436957312165136 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4491806 chr19:4491805 nonsynonymous SNV 0.521 2 20 hm7G_associated_SNPs_25868 0 0 1 0 2 HDGFL2 chr19:4491832 5'GT 4491832 Upstream 28bp 23600 chr18 31251764 31251764 1 + G T THCA 31251765 + 31251745 31251785 41 AGATAAAGAAATGAAACATGGGCAAAAATCTCCCACTGGAA AGATAAAGAAATGAAACATTGGCAAAAATCTCCCACTGGAA < 41bp 0.449439575890517 0.718460912612123 NA NA prediction 0.436921825224247 Functional Gain - ASXL3 ENSG00000141431 CDS Human protein_coding chr18:31251765 chr18:31251764 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25870 0 0 1 0 2 ASXL3 chr18:31251711 3'AG 31251711 Downstream 54bp 23601 chr18 31251764 31251764 1 + G T THCA 31251765 + 31251745 31251785 41 AGATAAAGAAATGAAACATGGGCAAAAATCTCCCACTGGAA AGATAAAGAAATGAAACATTGGCAAAAATCTCCCACTGGAA < 41bp 0.449439575890517 0.718460912612123 NA NA prediction 0.436921825224247 Functional Gain - ASXL3 ENSG00000141431 CDS Human protein_coding chr18:31251765 chr18:31251764 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25870 0 0 1 0 2 ASXL3 chr18:31251830 5'GT 31251830 Upstream 67bp 23602 chr2 242141639 242141639 1 + G A LUAD 242141640 + 242141620 242141660 41 CCTGGCCAAGACCCCGTATGGCCACGAGAAGAAAAACCTGC CCTGGCCAAGACCCCGTATAGCCACGAGAAGAAAAACCTGC < 41bp 0.491809021206081 0.718445812812635 NA NA prediction 0.43689162562527 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242141640 chr2:242141639 nonsynonymous SNV 0.917 3 20 hm7G_associated_SNPs_25873 0 0 0 0 2 ANO7 chr2:242141609 3'AG 242141609 Downstream 31bp 23603 chr2 242141639 242141639 1 + G A LUAD 242141640 + 242141620 242141660 41 CCTGGCCAAGACCCCGTATGGCCACGAGAAGAAAAACCTGC CCTGGCCAAGACCCCGTATAGCCACGAGAAGAAAAACCTGC < 41bp 0.491809021206081 0.718445812812635 NA NA prediction 0.43689162562527 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242141640 chr2:242141639 nonsynonymous SNV 0.917 3 20 hm7G_associated_SNPs_25873 0 0 0 0 2 ANO7 chr2:242141719 5'GT 242141719 Upstream 81bp 23604 chr19 49693976 49693976 1 + G A rs78381230 49693977 + 49693957 49693997 41 TCAGAAGAGGAGCCCACACGGGAGGAGCTAGAGTTTGACAT TCAGAAGAGGAGCCCACACAGGAGGAGCTAGAGTTTGACAT < 41bp 0.506697674069701 0.725140482445834 NA NA prediction 0.436885616752265 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49693977 chr19:49693976 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_25875 0 0 0 0 2 TRPM4 chr19:49693953 3'AG 49693953 Downstream 24bp 23605 chr19 49693976 49693976 1 + G A rs78381230 49693977 + 49693957 49693997 41 TCAGAAGAGGAGCCCACACGGGAGGAGCTAGAGTTTGACAT TCAGAAGAGGAGCCCACACAGGAGGAGCTAGAGTTTGACAT < 41bp 0.506697674069701 0.725140482445834 NA NA prediction 0.436885616752265 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49693977 chr19:49693976 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_25875 0 0 0 0 2 TRPM4 chr19:49694030 5'GT 49694030 Upstream 55bp 23606 chr6 126329582 126329582 1 + G T LUAD 126329583 + 126329563 126329603 41 TTTTGGTGCATATGTGTATGGGACAGACATAGACTACAACA TTTTGGTGCATATGTGTATTGGACAGACATAGACTACAACA < 41bp 0.665790646746463 0.884232451227846 NA NA prediction 0.436883608962765 Functional Gain - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126329583 chr6:126329582 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_25876 0 0 1 0 2 TRMT11 chr6:126329538 3'AG 126329538 Downstream 45bp 23607 chr6 126329582 126329582 1 + G T LUAD 126329583 + 126329563 126329603 41 TTTTGGTGCATATGTGTATGGGACAGACATAGACTACAACA TTTTGGTGCATATGTGTATTGGACAGACATAGACTACAACA < 41bp 0.665790646746463 0.884232451227846 NA NA prediction 0.436883608962765 Functional Gain - TRMT11 ENSG00000066651 CDS Human protein_coding chr6:126329583 chr6:126329582 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_25876 0 0 1 0 2 TRMT11 chr6:126329618 5'GT 126329618 Upstream 37bp 23608 chr17 79203128 79203128 1 + G T STAD 79203129 + 79203109 79203149 41 GACCGGGGTTGAACTCAGAGGCTGCAGGAAGACCTGGCTCC GACCGGGGTTGAACTCAGATGCTGCAGGAAGACCTGGCTCC < 41bp 0.387671194907509 0.718428187151738 NA NA prediction 0.436856374303476 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79203129 chr17:79203128 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_25879 0 0 0 0 1 TEPSIN chr17:79203177 5'GT 79203177 Upstream 50bp 23609 chr20 44641139 44641139 1 + G A SKCM 44641140 + 44641120 44641160 41 ATCATTCCTCAGTGCCGGAGGCGCTCATGTACCCTATGTAC ATCATTCCTCAGTGCCGGAAGCGCTCATGTACCCTATGTAC < 41bp 0.498132383669874 0.718406186342405 NA NA prediction 0.436812372684809 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641140 chr20:44641139 synonymous SNV . 0 20 hm7G_associated_SNPs_25880 0 0 0 0 2 MMP9 chr20:44641066 3'AG 44641066 Downstream 74bp 23610 chr20 44641139 44641139 1 + G A SKCM 44641140 + 44641120 44641160 41 ATCATTCCTCAGTGCCGGAGGCGCTCATGTACCCTATGTAC ATCATTCCTCAGTGCCGGAAGCGCTCATGTACCCTATGTAC < 41bp 0.498132383669874 0.718406186342405 NA NA prediction 0.436812372684809 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641140 chr20:44641139 synonymous SNV . 0 20 hm7G_associated_SNPs_25880 0 0 0 0 2 MMP9 chr20:44641221 5'GT 44641221 Upstream 83bp 23611 chr4 15516455 15516455 1 + G T ACC 15516456 + 15516436 15516476 41 TCCATGATCGGCTGCAGATGGAAAGAGAAATGCTCTTCATA TCCATGATCGGCTGCAGATTGAAAGAGAAATGCTCTTCATA < 41bp 0.378881038432447 0.718402983774231 NA NA prediction 0.436805967548462 Functional Gain - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15516456 chr4:15516455 nonsynonymous SNV 0.068 1 20 hm7G_associated_SNPs_25881 0 0 0 0 1 CC2D2A chr4:15516492 5'GT 15516492 Upstream 38bp 23612 chr16 56920945 56920945 1 + G T LUAD 56920946 + 56920926 56920966 41 TGAACAAGAGGAAGATCAAGGCCTTCTACTCGGATGTCATT TGAACAAGAGGAAGATCAATGCCTTCTACTCGGATGTCATT < 41bp 0.360449711335481 0.718399060680082 NA NA prediction 0.436798121360164 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920946 chr16:56920945 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25882 0 0 0 0 2 SLC12A3 chr16:56920865 3'AG 56920865 Downstream 81bp 23613 chr16 56920945 56920945 1 + G T LUAD 56920946 + 56920926 56920966 41 TGAACAAGAGGAAGATCAAGGCCTTCTACTCGGATGTCATT TGAACAAGAGGAAGATCAATGCCTTCTACTCGGATGTCATT < 41bp 0.360449711335481 0.718399060680082 NA NA prediction 0.436798121360164 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920946 chr16:56920945 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25882 0 0 0 0 2 SLC12A3 chr16:56921005 5'GT 56921005 Upstream 61bp 23614 chr1 226026435 226026435 1 + G A LGG 226026436 + 226026416 226026456 41 GCCCTTGCTGATGGTGCACGGCTGGCCCGGCTCTTTCTACG GCCCTTGCTGATGGTGCACAGCTGGCCCGGCTCTTTCTACG < 41bp 0.523423624069121 0.741821898844523 NA NA prediction 0.436796549550803 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226026436 chr1:226026435 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_25883 0 0 1 0 1 EPHX1 chr1:226026355 3'AG 226026355 Downstream 81bp 23615 chrX 123480538 123480538 1 + G T LUAD 123480539 + 123480519 123480559 41 CAAAATCAGCAGGGAAACCGGCGAGAAGCTCCTGCTTGCCA CAAAATCAGCAGGGAAACCTGCGAGAAGCTCCTGCTTGCCA < 41bp 0.667210585199948 0.885602895783054 NA NA prediction 0.436784621166212 Functional Gain - SH2D1A ENSG00000183918 CDS Human protein_coding chrX:123480539 chrX:123480538 nonsynonymous SNV 0.958 3 20 hm7G_associated_SNPs_25885 0 0 0 2 1 SH2D1A chrX:123480629 5'GT 123480629 Upstream 92bp 23616 chr18 72183487 72183487 1 + C T COAD 72183488 + 72183468 72183508 41 CATCCTCATGCACCGATGGCGGTACCCGTCTCTGTCCCTCC CATCCTCATGCACCGATGGTGGTACCCGTCTCTGTCCCTCC < 41bp 0.50304580281534 0.721418742640317 NA NA prediction 0.436745879649954 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72183488 chr18:72183487 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_25886 0 0 0 0 1 CNDP2 chr18:72183463 3'AG 72183463 Downstream 25bp 23617 chr11 117052657 117052657 1 + G A CESC 117052658 + 117052638 117052678 41 AACACCACATACCAGCTCCGGGTCAGCCGCATGGACGATTT AACACCACATACCAGCTCCAGGTCAGCCGCATGGACGATTT < 41bp 0.506877901198358 0.725242859150889 NA NA prediction 0.43672991590506 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117052658 chr11:117052657 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_25888 0 0 1 0 1 SIDT2 chr11:117052687 5'GT 117052687 Upstream 31bp 23618 chr21 43838655 43838655 1 + G A SKCM 43838656 + 43838636 43838676 41 TCACAGCGGACGGGCTGCCGGGGCTTCCTGCCGGAAAACTA TCACAGCGGACGGGCTGCCAGGGCTTCCTGCCGGAAAACTA < 41bp 0.501703883521425 0.720066455596274 NA NA prediction 0.436725144149698 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838656 chr21:43838655 nonsynonymous SNV 0.731 0 20 hm7G_associated_SNPs_25890 0 0 0 0 1 UBASH3A chr21:43838718 5'GT 43838718 Upstream 64bp 23619 chr2 120012344 120012344 1 + G A rs188660715 120012345 + 120012325 120012365 41 CCTGGGAGTGCTGGCCCTCGGCACGTTGTCCCTGCTGGCCG CCTGGGAGTGCTGGCCCTCAGCACGTTGTCCCTGCTGGCCG < 41bp 0.50679177854137 0.725148495706264 NA NA prediction 0.436713434329788 Functional Gain - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120012345 chr2:120012344 nonsynonymous SNV 0.555 4 20 hm7G_associated_SNPs_25891 0 0 1 0 2 STEAP3 chr2:120012260 3'AG 120012260 Downstream 85bp 23620 chr2 120012344 120012344 1 + G A rs188660715 120012345 + 120012325 120012365 41 CCTGGGAGTGCTGGCCCTCGGCACGTTGTCCCTGCTGGCCG CCTGGGAGTGCTGGCCCTCAGCACGTTGTCCCTGCTGGCCG < 41bp 0.50679177854137 0.725148495706264 NA NA prediction 0.436713434329788 Functional Gain - STEAP3 ENSG00000115107 CDS Human protein_coding chr2:120012345 chr2:120012344 nonsynonymous SNV 0.555 4 20 hm7G_associated_SNPs_25891 0 0 1 0 2 STEAP3 chr2:120012424 5'GT 120012424 Upstream 81bp 23621 chr12 122674757 122674757 1 + G A CESC 122674758 + 122674738 122674778 41 ACCAGCCTGAGGACCCTCCGGCACCTGCGACTCCTGGTGCT ACCAGCCTGAGGACCCTCCAGCACCTGCGACTCCTGGTGCT < 41bp 0.552080226941496 0.770431389915752 NA NA prediction 0.436702325948512 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122674758 chr12:122674757 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_25892 0 0 0 0 1 LRRC43 chr12:122674677 3'AG 122674677 Downstream 81bp 23622 chr11 293192 293192 1 + G T LUAD 293193 + 293173 293213 41 CCCCGACGAGTACCATTCAGGGGTCAACAACTCTGTGTACA CCCCGACGAGTACCATTCATGGGTCAACAACTCTGTGTACA < 41bp 0.368694327576298 0.718336497695934 NA NA prediction 0.436672995391868 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:293193 chr11:293192 nonsynonymous SNV 0.161 3 20 hm7G_associated_SNPs_25894 0 0 0 0 2 PGGHG chr11:293163 3'AG 293163 Downstream 30bp 23623 chr11 293192 293192 1 + G T LUAD 293193 + 293173 293213 41 CCCCGACGAGTACCATTCAGGGGTCAACAACTCTGTGTACA CCCCGACGAGTACCATTCATGGGTCAACAACTCTGTGTACA < 41bp 0.368694327576298 0.718336497695934 NA NA prediction 0.436672995391868 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:293193 chr11:293192 nonsynonymous SNV 0.161 3 20 hm7G_associated_SNPs_25894 0 0 0 0 2 PGGHG chr11:293235 5'GT 293235 Upstream 44bp 23624 chr19 7986940 7986940 1 + G T LUAD 7986941 + 7986921 7986961 41 TGCTCACCATCGCGGCCACGGAACCGGTCACCCTCCTGCAC TGCTCACCATCGCGGCCACTGAACCGGTCACCCTCCTGCAC < 41bp 0.363127400705185 0.718331169208835 NA NA prediction 0.436662338417671 Functional Gain - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986941 chr19:7986940 synonymous SNV . 0 20 hm7G_associated_SNPs_25895 0 0 0 0 1 SNAPC2 chr19:7986920 3'AG 7986920 Downstream 21bp 23625 chr17 78172345 78172345 1 + G A rs113127952 78172346 + 78172326 78172366 41 ACCGGGTCACCCCGGGCTCGGCGGCGGACCAGATGGCCTTG ACCGGGTCACCCCGGGCTCAGCGGCGGACCAGATGGCCTTG < 41bp 0.512791528913707 0.731108842591565 NA NA prediction 0.436634627355716 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172346 chr17:78172345 synonymous SNV . 0 20 hm7G_associated_SNPs_25898 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 46bp 23626 chr12 31135587 31135587 1 + G A STAD 31135588 + 31135568 31135608 41 GACAGTGGTGGTGCGCTGCGGCCAGCGGGCCCACCCCTCCA GACAGTGGTGGTGCGCTGCAGCCAGCGGGCCCACCCCTCCA < 41bp 0.521763471832774 0.740080152764014 NA NA prediction 0.43663336186248 Functional Gain - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31135588 chr12:31135587 nonsynonymous SNV 0.640 2 20 hm7G_associated_SNPs_25899 0 0 0 0 1 TSPAN11 chr12:31135625 5'GT 31135625 Upstream 39bp 23627 chr20 36560117 36560117 1 + G A rs201047349 36560118 + 36560098 36560138 41 CTGCTCCTTCCGCGGCAGCGGCTCCCCCTCCTACTCGCTGG CTGCTCCTTCCGCGGCAGCAGCTCCCCCTCCTACTCGCTGG < 41bp 0.528773850491274 0.747088113132709 NA NA prediction 0.436628525282871 Functional Gain - VSTM2L ENSG00000132821 CDS Human protein_coding chr20:36560118 chr20:36560117 nonsynonymous SNV 0.128 2 20 hm7G_associated_SNPs_25901 0 0 1 0 2 VSTM2L chr20:36560037 3'AG 36560037 Downstream 81bp 23628 chr20 36560117 36560117 1 + G A rs201047349 36560118 + 36560098 36560138 41 CTGCTCCTTCCGCGGCAGCGGCTCCCCCTCCTACTCGCTGG CTGCTCCTTCCGCGGCAGCAGCTCCCCCTCCTACTCGCTGG < 41bp 0.528773850491274 0.747088113132709 NA NA prediction 0.436628525282871 Functional Gain - VSTM2L ENSG00000132821 CDS Human protein_coding chr20:36560118 chr20:36560117 nonsynonymous SNV 0.128 2 20 hm7G_associated_SNPs_25901 0 0 1 0 2 VSTM2L chr20:36560206 5'GT 36560206 Upstream 90bp 23629 chr17 79684471 79684471 1 + G A rs566528797 79684472 + 79684452 79684492 41 GCAGCTGGTCCTTAGCACCGGGTACCTCTCTGACAACATCT GCAGCTGGTCCTTAGCACCAGGTACCTCTCTGACAACATCT < 41bp 0.516188858874643 0.734502650618328 NA NA prediction 0.43662758348737 Functional Gain - SLC25A10 ENSG00000183048;ENSG00000262660 CDS Human other chr17:79684472 chr17:79684471 nonsynonymous SNV 0.142 0 20 hm7G_associated_SNPs_25902 0 0 1 0 2 SLC25A10 chr17:79684429 3'AG 79684429 Downstream 43bp 23630 chr17 79684471 79684471 1 + G A rs566528797 79684472 + 79684452 79684492 41 GCAGCTGGTCCTTAGCACCGGGTACCTCTCTGACAACATCT GCAGCTGGTCCTTAGCACCAGGTACCTCTCTGACAACATCT < 41bp 0.516188858874643 0.734502650618328 NA NA prediction 0.43662758348737 Functional Gain - SLC25A10 ENSG00000183048;ENSG00000262660 CDS Human other chr17:79684472 chr17:79684471 nonsynonymous SNV 0.142 0 20 hm7G_associated_SNPs_25902 0 0 1 0 2 SLC25A10 chr17:79684521 5'GT 79684521 Upstream 51bp 23631 chr10 122334730 122334730 1 + G A OV 122334731 + 122334711 122334751 41 GGGCGGGGAAAGAGCTGGCGGCTCTGTGCTGCCATCCTGCC GGGCGGGGAAAGAGCTGGCAGCTCTGTGCTGCCATCCTGCC < 41bp 0.504602770611324 0.722914764989218 NA NA prediction 0.436623988755788 Functional Gain - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334731 chr10:122334730 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25903 0 0 0 0 2 PLPP4 chr10:122334643 3'AG 122334643 Downstream 88bp 23632 chr10 122334730 122334730 1 + G A OV 122334731 + 122334711 122334751 41 GGGCGGGGAAAGAGCTGGCGGCTCTGTGCTGCCATCCTGCC GGGCGGGGAAAGAGCTGGCAGCTCTGTGCTGCCATCCTGCC < 41bp 0.504602770611324 0.722914764989218 NA NA prediction 0.436623988755788 Functional Gain - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334731 chr10:122334730 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25903 0 0 0 0 2 PLPP4 chr10:122334813 5'GT 122334813 Upstream 84bp 23633 chr17 61607502 61607502 1 + G T KIRC 61607503 + 61607483 61607523 41 GCCCGTGAAGAACGAGGACGGGGCTGTCATCATGTTCATTC GCCCGTGAAGAACGAGGACTGGGCTGTCATCATGTTCATTC < 41bp 0.363268818944996 0.718301681519523 NA NA prediction 0.436603363039046 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61607503 chr17:61607502 nonsynonymous SNV 0.929 5 20 hm7G_associated_SNPs_25904 0 0 0 0 1 KCNH6 chr17:61607452 3'AG 61607452 Downstream 51bp 23634 chr20 39794395 39794395 1 + C T UCEC 39794396 + 39794376 39794416 41 CTGAGTACTGCATCGAGACCGGAGCCCCTGACGGCTCCTTC CTGAGTACTGCATCGAGACTGGAGCCCCTGACGGCTCCTTC < 41bp 0.504236259523584 0.722537680521204 NA NA prediction 0.436602841995241 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39794396 chr20:39794395 synonymous SNV . 0 20 hm7G_associated_SNPs_25905 0 0 1 0 1 PLCG1 chr20:39794466 5'GT 39794466 Upstream 72bp 23635 chr19 2399143 2399143 1 + G A UCEC 2399144 + 2399124 2399164 41 GGCAAGGCTGCGGGAGCACGGCATCTCCCTGGCTGCCTATG GGCAAGGCTGCGGGAGCACAGCATCTCCCTGGCTGCCTATG < 41bp 0.481148084297936 0.718288985987326 NA NA prediction 0.436577971974652 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2399144 chr19:2399143 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_25907 0 0 0 0 2 TMPRSS9 chr19:2399050 3'AG 2399050 Downstream 94bp 23636 chr19 2399143 2399143 1 + G A UCEC 2399144 + 2399124 2399164 41 GGCAAGGCTGCGGGAGCACGGCATCTCCCTGGCTGCCTATG GGCAAGGCTGCGGGAGCACAGCATCTCCCTGGCTGCCTATG < 41bp 0.481148084297936 0.718288985987326 NA NA prediction 0.436577971974652 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2399144 chr19:2399143 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_25907 0 0 0 0 2 TMPRSS9 chr19:2399191 5'GT 2399191 Upstream 49bp 23637 chr7 94039106 94039106 1 + C T rs138357977 94039107 + 94039087 94039127 41 CTGGCCCTGTTGGTGCTGCCGGTGCTACTGGTGCCAGAGGA CTGGCCCTGTTGGTGCTGCTGGTGCTACTGGTGCCAGAGGA < 41bp 0.515848325916588 0.734131844052172 NA NA prediction 0.436567036271166 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94039107 chr7:94039106 synonymous SNV . 0 20 hm7G_associated_SNPs_25910 0 0 0 0 2 COL1A2 chr7:94039035 3'AG 94039035 Downstream 72bp 23638 chr7 94039106 94039106 1 + C T rs138357977 94039107 + 94039087 94039127 41 CTGGCCCTGTTGGTGCTGCCGGTGCTACTGGTGCCAGAGGA CTGGCCCTGTTGGTGCTGCTGGTGCTACTGGTGCCAGAGGA < 41bp 0.515848325916588 0.734131844052172 NA NA prediction 0.436567036271166 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94039107 chr7:94039106 synonymous SNV . 0 20 hm7G_associated_SNPs_25910 0 0 0 0 2 COL1A2 chr7:94039133 5'GT 94039133 Upstream 28bp 23639 chr17 47246130 47246130 1 + G T COAD 47246131 + 47246111 47246151 41 CTGCCTTCACAAGAGGATGGGATTTTTCCAACCCCTGGATG CTGCCTTCACAAGAGGATGTGATTTTTCCAACCCCTGGATG < 41bp 0.373521650497176 0.718269872347027 NA NA prediction 0.436539744694054 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47246131 chr17:47246130 stopgain 0.020 0 20 hm7G_associated_SNPs_25913 0 0 0 0 1 B4GALNT2 chr17:47246043 3'AG 47246043 Downstream 88bp 23640 chr10 125447488 125447488 1 + G T LUAD 125447489 + 125447469 125447509 41 GCCCATCGGCTCCCACTGGGGGGTGCTGTCCAAGTGCTTGG GCCCATCGGCTCCCACTGGTGGGTGCTGTCCAAGTGCTTGG < 41bp 0.389417361266597 0.718255421284042 NA NA prediction 0.436510842568085 Functional Gain - GPR26 ENSG00000154478 CDS Human protein_coding chr10:125447489 chr10:125447488 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_25915 0 0 0 0 1 GPR26 chr10:125447445 3'AG 125447445 Downstream 44bp 23641 chr17 42085001 42085001 1 + G A SKCM 42085002 + 42084982 42085022 41 CCATGGAGCCCGTCCTGGGGGGCACCCCGTACCTGGACAAA CCATGGAGCCCGTCCTGGGAGGCACCCCGTACCTGGACAAA < 41bp 0.530683632252345 0.748936473282605 NA NA prediction 0.43650568206052 Functional Gain - NAGS ENSG00000161653 CDS Human protein_coding chr17:42085002 chr17:42085001 synonymous SNV . 0 20 hm7G_associated_SNPs_25916 0 0 0 0 2 NAGS chr17:42084935 3'AG 42084935 Downstream 67bp 23642 chr17 42085001 42085001 1 + G A SKCM 42085002 + 42084982 42085022 41 CCATGGAGCCCGTCCTGGGGGGCACCCCGTACCTGGACAAA CCATGGAGCCCGTCCTGGGAGGCACCCCGTACCTGGACAAA < 41bp 0.530683632252345 0.748936473282605 NA NA prediction 0.43650568206052 Functional Gain - NAGS ENSG00000161653 CDS Human protein_coding chr17:42085002 chr17:42085001 synonymous SNV . 0 20 hm7G_associated_SNPs_25916 0 0 0 0 2 NAGS chr17:42084959 3'AG 42084959 Downstream 43bp 23643 chr5 137756482 137756482 1 + C T SARC 137756483 + 137756463 137756503 41 TCCACTGCAAAGGTCTCTCCGCTGACTCCAAAGCTTTTTAA TCCACTGCAAAGGTCTCTCTGCTGACTCCAAAGCTTTTTAA < 41bp 0.502636211939403 0.720876731345365 NA NA prediction 0.436481038811923 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137756483 chr5:137756482 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_25918 0 0 1 0 1 KDM3B chr5:137756395 3'AG 137756395 Downstream 88bp 23644 chr11 73105738 73105738 1 + G T STAD 73105739 + 73105719 73105759 41 TTCCCAAGGCCGGGGCCAAGGCAGGGCGTCAGGGCGAGATC TTCCCAAGGCCGGGGCCAATGCAGGGCGTCAGGGCGAGATC < 41bp 0.692254589189068 0.910478794593618 NA NA prediction 0.4364484108091 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73105739 chr11:73105738 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_25919 0 0 0 0 1 RELT chr11:73105779 5'GT 73105779 Upstream 42bp 23645 chr22 25243627 25243627 1 + G A UCEC 25243628 + 25243608 25243648 41 GGAGGCCTGCGTTCTGCACGGGCTTCGGCGGCGGGCGGCTG GGAGGCCTGCGTTCTGCACAGGCTTCGGCGGCGGGCGGCTG < 41bp 0.530592285245209 0.748807117694748 NA NA prediction 0.436429664899078 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25243628 chr22:25243627 nonsynonymous SNV 0.941 3 20 hm7G_associated_SNPs_25920 0 0 0 0 1 SGSM1 chr22:25243601 3'AG 25243601 Downstream 27bp 23646 chr12 58014865 58014865 1 + G T UCEC 58014866 + 58014846 58014886 41 GCCGTGGCCTTCGGGAGCGGGGCGTTGATGGTGAGGGAGGA GCCGTGGCCTTCGGGAGCGTGGCGTTGATGGTGAGGGAGGA < 41bp 0.686039058382447 0.904243524832099 NA NA prediction 0.436408932899303 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58014866 chr12:58014865 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_25921 0 0 0 0 1 SLC26A10 chr12:58014875 5'GT 58014875 Upstream 11bp 23647 chr22 25297822 25297822 1 + C T UCEC 25297823 + 25297803 25297843 41 GAGCTGCTGGATCTGTACACGGTGAACCTGCACCGCATCGA GAGCTGCTGGATCTGTACATGGTGAACCTGCACCGCATCGA < 41bp 0.49904664962823 0.718202584110998 NA NA prediction 0.436405168221996 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25297823 chr22:25297822 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_25922 0 0 0 0 1 SGSM1 chr22:25297800 3'AG 25297800 Downstream 23bp 23648 chr1 104203096 104203096 1 + G T BLCA 104203097 + 104203077 104203117 41 CCTCTATACTTACCTTCTGGGATGCTAGGTAAAAAACCAAG CCTCTATACTTACCTTCTGTGATGCTAGGTAAAAAACCAAG < 41bp 0.400502169356246 0.718195051156138 NA NA prediction 0.436390102312275 Functional Gain - AMY1A;AMY1B;AMY1C ENSG00000237763 CDS Human protein_coding chr1:104203097 chr1:104203096 nonsynonymous SNV 0.452 5 20 hm7G_associated_SNPs_25923 0 0 0 0 1 AMY1A;AMY1B;AMY1C chr1:104203104 5'GT 104203104 Upstream 9bp 23649 chr2 66796210 66796210 1 + G T LUAD 66796211 + 66796191 66796231 41 GTGGAATGGGCATGAATATGGGCATGGAGGGGCAGTGGCAC GTGGAATGGGCATGAATATTGGCATGGAGGGGCAGTGGCAC < 41bp 0.667739163349683 0.885921815403105 NA NA prediction 0.436365304106846 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66796211 chr2:66796210 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_25925 0 0 1 0 1 MEIS1 chr2:66796182 3'AG 66796182 Downstream 29bp 23650 chrX 1522378 1522378 1 + G A STAD 1522379 + 1522359 1522399 41 TCTCCACCAGCAGCAGGCCGGCCCCTGAGGGAGACAGCAGA TCTCCACCAGCAGCAGGCCAGCCCCTGAGGGAGACAGCAGA < 41bp 0.536358633865713 0.75453471556689 NA NA prediction 0.436352163402354 Functional Gain - ASMTL ENSG00000169093 CDS Human protein_coding chrX:1522379 chrX:1522378 synonymous SNV . 0 20 hm7G_associated_SNPs_25927 0 0 0 0 1 ASMTL chrX:1522354 3'AG 1522354 Downstream 25bp 23651 chr1 118483785 118483785 1 + G T LAML 118483786 + 118483766 118483806 41 AAGCTGGTTCCATAATGCGGGAAGGAAGAGACAGAGTTGTA AAGCTGGTTCCATAATGCGTGAAGGAAGAGACAGAGTTGTA < 41bp 0.671598832119125 0.889767533271755 NA NA prediction 0.43633740230526 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118483786 chr1:118483785 synonymous SNV . 0 20 hm7G_associated_SNPs_25930 0 0 1 0 2 WDR3 chr1:118483747 3'AG 118483747 Downstream 39bp 23652 chr1 118483785 118483785 1 + G T LAML 118483786 + 118483766 118483806 41 AAGCTGGTTCCATAATGCGGGAAGGAAGAGACAGAGTTGTA AAGCTGGTTCCATAATGCGTGAAGGAAGAGACAGAGTTGTA < 41bp 0.671598832119125 0.889767533271755 NA NA prediction 0.43633740230526 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118483786 chr1:118483785 synonymous SNV . 0 20 hm7G_associated_SNPs_25930 0 0 1 0 2 WDR3 chr1:118483848 5'GT 118483848 Upstream 64bp 23653 chr7 44152173 44152173 1 + G A HNSC 44152174 + 44152154 44152194 41 CAGGTATCCACGGAGGTCCGGGCCATCATTGCCTGGATGGA CAGGTATCCACGGAGGTCCAGGCCATCATTGCCTGGATGGA < 41bp 0.511625988079153 0.729787935573529 NA NA prediction 0.436323894988752 Functional Gain - AEBP1 ENSG00000106624 CDS Human protein_coding chr7:44152174 chr7:44152173 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_25931 0 0 0 0 1 AEBP1 chr7:44152157 3'AG 44152157 Downstream 17bp 23654 chr3 133472495 133472495 1 + G T GBM 133472496 + 133472476 133472516 41 TGGTGTATGATGCTTACCTGGCTCCCAATAACCTGAAGCCT TGGTGTATGATGCTTACCTTGCTCCCAATAACCTGAAGCCT < 41bp 0.363508674417615 0.71814994287817 NA NA prediction 0.436299885756341 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133472496 chr3:133472495 synonymous SNV . 0 20 hm7G_associated_SNPs_25934 0 0 1 0 1 TF chr3:133472439 3'AG 133472439 Downstream 57bp 23655 chr1 17555148 17555148 1 + G T LUAD 17555149 + 17555129 17555169 41 CTCTCTCGGACTACAAACAGGTGCTGGGGCCCCAGTGTCTG CTCTCTCGGACTACAAACATGTGCTGGGGCCCCAGTGTCTG < 41bp 0.379639418937176 0.718145716168328 NA NA prediction 0.436291432336656 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17555149 chr1:17555148 nonsynonymous SNV 0.837 0 20 hm7G_associated_SNPs_25935 0 0 0 0 1 PADI1 chr1:17555120 3'AG 17555120 Downstream 29bp 23656 chr16 846999 846999 1 + G A rs140737412 847000 + 846980 847020 41 GGCTCGAGGGTCTGCTGGGGGGCATTGGGGAGAAAGGGGTG GGCTCGAGGGTCTGCTGGGAGGCATTGGGGAGAAAGGGGTG < 41bp 0.521034816974345 0.739163845414275 NA NA prediction 0.43625805687986 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:847000 chr16:846999 synonymous SNV . 0 20 hm7G_associated_SNPs_25938 0 0 1 0 2 CHTF18 chr16:846961 3'AG 846961 Downstream 39bp 23657 chr16 846999 846999 1 + G A rs140737412 847000 + 846980 847020 41 GGCTCGAGGGTCTGCTGGGGGGCATTGGGGAGAAAGGGGTG GGCTCGAGGGTCTGCTGGGAGGCATTGGGGAGAAAGGGGTG < 41bp 0.521034816974345 0.739163845414275 NA NA prediction 0.43625805687986 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:847000 chr16:846999 synonymous SNV . 0 20 hm7G_associated_SNPs_25938 0 0 1 0 2 CHTF18 chr16:847092 5'GT 847092 Upstream 94bp 23658 chr2 234975187 234975187 1 + G T LUAD 234975188 + 234975168 234975208 41 TTTCTTTAGATGATTTTTGGGGACATGTTGGGATCTCATAA TTTCTTTAGATGATTTTTGTGGACATGTTGGGATCTCATAA < 41bp 0.663924686436885 0.882053703475919 NA NA prediction 0.436258034078068 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234975188 chr2:234975187 nonsynonymous SNV 0.525 2 20 hm7G_associated_SNPs_25939 0 0 0 0 2 SPP2 chr2:234975177 3'AG 234975177 Downstream 11bp 23659 chr2 234975187 234975187 1 + G T LUAD 234975188 + 234975168 234975208 41 TTTCTTTAGATGATTTTTGGGGACATGTTGGGATCTCATAA TTTCTTTAGATGATTTTTGTGGACATGTTGGGATCTCATAA < 41bp 0.663924686436885 0.882053703475919 NA NA prediction 0.436258034078068 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234975188 chr2:234975187 nonsynonymous SNV 0.525 2 20 hm7G_associated_SNPs_25939 0 0 0 0 2 SPP2 chr2:234975231 5'GT 234975231 Upstream 45bp 23660 chr17 7339208 7339208 1 + G T LUSC 7339209 + 7339189 7339229 41 GCATGGCTTCCGCAGTCTGGGGGAGTGCCCCCTGGTGGGGC GCATGGCTTCCGCAGTCTGTGGGAGTGCCCCCTGGTGGGGC < 41bp 0.376388252064359 0.718127223535251 NA NA prediction 0.436254447070503 Functional Gain - TMEM102 ENSG00000181284 CDS Human processed_transcript chr17:7339209 chr17:7339208 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_25940 0 0 0 0 1 TMEM102 chr17:7339172 3'AG 7339172 Downstream 37bp 23661 chr3 114026804 114026804 1 + G T GBM 114026805 + 114026785 114026825 41 GAAAATCAGCTGGACAGGAGGAATGGAGCCCCAGTGCTCCC GAAAATCAGCTGGACAGGATGAATGGAGCCCCAGTGCTCCC < 41bp 0.661433212042505 0.879557806471446 NA NA prediction 0.436249188857882 Functional Gain - TIGIT ENSG00000181847 CDS Human protein_coding chr3:114026805 chr3:114026804 nonsynonymous SNV 0.019 1 20 hm7G_associated_SNPs_25941 0 0 0 0 1 TIGIT chr3:114026742 3'AG 114026742 Downstream 63bp 23662 chr10 103986377 103986377 1 + G T UCEC 103986378 + 103986358 103986398 41 ATAACTTCGAGCTGTCCAAGGACATGAGGCCCTTTTTCGAG ATAACTTCGAGCTGTCCAATGACATGAGGCCCTTTTTCGAG < 41bp 0.398749340431157 0.718123301475516 NA NA prediction 0.436246602951031 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103986378 chr10:103986377 nonsynonymous SNV 0.476 0 20 hm7G_associated_SNPs_25943 0 0 0 0 1 ELOVL3 chr10:103986406 5'GT 103986406 Upstream 30bp 23663 chr16 27456509 27456509 1 + G T LUAD 27456510 + 27456490 27456530 41 CTTCCCAGAGTTAAAGGAAGGCTGGAACCCTCACCTGCTGC CTTCCCAGAGTTAAAGGAATGCTGGAACCCTCACCTGCTGC < 41bp 0.378414673349001 0.718120278407546 NA NA prediction 0.436240556815093 Functional Gain - IL21R ENSG00000103522 CDS Human protein_coding chr16:27456510 chr16:27456509 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_25944 0 0 0 0 1 IL21R chr16:27456597 5'GT 27456597 Upstream 89bp 23664 chr1 155150523 155150523 1 + G A SKCM 155150524 + 155150504 155150544 41 GGTGTCGCAGCTGGTGCGGGGGCTGGGGGCTGTGCTGGAGG GGTGTCGCAGCTGGTGCGGAGGCTGGGGGCTGTGCTGGAGG < 41bp 0.497680075530551 0.718111917402976 NA NA prediction 0.436223834805951 Functional Gain - TRIM46 ENSG00000163462 CDS Human protein_coding chr1:155150524 chr1:155150523 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_25947 0 0 0 0 1 TRIM46 chr1:155150478 3'AG 155150478 Downstream 46bp 23665 chr15 66811345 66811345 1 + G T SARC 66811346 + 66811326 66811366 41 GATCCTGAAGGTACTTGTTGGCTAGGAGCTGAGCTTATCAC GATCCTGAAGGTACTTGTTTGCTAGGAGCTGAGCTTATCAC < 41bp 0.680638577190335 0.898748915108827 NA NA prediction 0.436220675836983 Functional Gain - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66811346 chr15:66811345 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_25948 0 0 1 0 1 ZWILCH chr15:66811416 5'GT 66811416 Upstream 72bp 23666 chr2 190608080 190608080 1 + G T UCEC 190608081 + 190608061 190608101 41 ATCCTATTAAAAGAATGCAGGAATAAACCTAATCAGTTCAT ATCCTATTAAAAGAATGCATGAATAAACCTAATCAGTTCAT < 41bp 0.409885962654145 0.718109715705042 NA NA prediction 0.436219431410084 Functional Gain - ANKAR ENSG00000151687 CDS Human protein_coding chr2:190608081 chr2:190608080 nonsynonymous SNV 0.031 1 20 hm7G_associated_SNPs_25949 0 0 0 1 1 ANKAR chr2:190608001 3'AG 190608001 Downstream 80bp 23667 chr13 114502364 114502364 1 + G T LUSC 114502365 + 114502345 114502385 41 TTTTACTCCAGTGGGGTGGGGTACTTGTACGATGTCTACCA TTTTACTCCAGTGGGGTGGTGTACTTGTACGATGTCTACCA < 41bp 0.393956288350644 0.718097103537584 NA NA prediction 0.436194207075168 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114502365 chr13:114502364 nonsynonymous SNV 0.087 0 20 hm7G_associated_SNPs_25951 0 0 0 0 2 TMEM255B chr13:114502312 3'AG 114502312 Downstream 53bp 23668 chr13 114502364 114502364 1 + G T LUSC 114502365 + 114502345 114502385 41 TTTTACTCCAGTGGGGTGGGGTACTTGTACGATGTCTACCA TTTTACTCCAGTGGGGTGGTGTACTTGTACGATGTCTACCA < 41bp 0.393956288350644 0.718097103537584 NA NA prediction 0.436194207075168 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114502365 chr13:114502364 nonsynonymous SNV 0.087 0 20 hm7G_associated_SNPs_25951 0 0 0 0 2 TMEM255B chr13:114502392 5'GT 114502392 Upstream 29bp 23669 chr10 6262819 6262819 1 + G T UCEC 6262820 + 6262800 6262840 41 ACTCAGGCCTGTCCAGCCGGGGCAAGAAGGTGCGGGGTGTG ACTCAGGCCTGTCCAGCCGTGGCAAGAAGGTGCGGGGTGTG < 41bp 0.686090768632881 0.904187032621288 NA NA prediction 0.436192527976816 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262820 chr10:6262819 synonymous SNV . 0 20 hm7G_associated_SNPs_25952 0 0 1 0 1 PFKFB3 chr10:6262828 5'GT 6262828 Upstream 10bp 23670 chr17 19286175 19286175 1 + G A BLCA 19286176 + 19286156 19286196 41 GGCACACCAAAGGGCAGTGGGGCTGGCTACGGTGTTGGCTT GGCACACCAAAGGGCAGTGAGGCTGGCTACGGTGTTGGCTT < 41bp 0.499304119891138 0.718093036604204 NA NA prediction 0.436186073208407 Functional Gain - MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19286176 chr17:19286175 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_25953 0 0 1 0 2 MAPK7 chr17:19286126 3'AG 19286126 Downstream 50bp 23671 chr17 19286175 19286175 1 + G A BLCA 19286176 + 19286156 19286196 41 GGCACACCAAAGGGCAGTGGGGCTGGCTACGGTGTTGGCTT GGCACACCAAAGGGCAGTGAGGCTGGCTACGGTGTTGGCTT < 41bp 0.499304119891138 0.718093036604204 NA NA prediction 0.436186073208407 Functional Gain - MAPK7 ENSG00000166484 CDS Human protein_coding chr17:19286176 chr17:19286175 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_25953 0 0 1 0 2 MAPK7 chr17:19286259 5'GT 19286259 Upstream 85bp 23672 chr8 124085043 124085043 1 + G T rs150445562 124085044 + 124085024 124085064 41 CCTAGGCAACAAGGAGAGCGGCAAGATATGGCACCGCAAGC CCTAGGCAACAAGGAGAGCTGCAAGATATGGCACCGCAAGC < 41bp 0.671186274570684 0.889278837927043 NA NA prediction 0.436185126712717 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124085044 chr8:124085043 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25954 0 0 1 0 1 TBC1D31 chr8:124085086 5'GT 124085086 Upstream 44bp 23673 chr20 2377211 2377211 1 + G A COAD 2377212 + 2377192 2377232 41 GTACGTGCTCAGCGACAGCGGCATCATCTTCCGAGGCGTGG GTACGTGCTCAGCGACAGCAGCATCATCTTCCGAGGCGTGG < 41bp 0.489358973303248 0.71807197029602 NA NA prediction 0.43614394059204 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2377212 chr20:2377211 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_25958 0 0 0 0 2 TGM6 chr20:2377152 3'AG 2377152 Downstream 60bp 23674 chr20 2377211 2377211 1 + G A COAD 2377212 + 2377192 2377232 41 GTACGTGCTCAGCGACAGCGGCATCATCTTCCGAGGCGTGG GTACGTGCTCAGCGACAGCAGCATCATCTTCCGAGGCGTGG < 41bp 0.489358973303248 0.71807197029602 NA NA prediction 0.43614394059204 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2377212 chr20:2377211 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_25958 0 0 0 0 2 TGM6 chr20:2377270 5'GT 2377270 Upstream 60bp 23675 chr20 61386218 61386218 1 + G A LUSC 61386219 + 61386199 61386239 41 GGCAGGGTCCAGGCCCTGCGGCACGGCGTGCGCGTCCTACG GGCAGGGTCCAGGCCCTGCAGCACGGCGTGCGCGTCCTACG < 41bp 0.488103860939966 0.718058819331878 NA NA prediction 0.436117638663757 Functional Gain - NTSR1 ENSG00000101188 CDS Human protein_coding chr20:61386219 chr20:61386218 nonsynonymous SNV 0.892 0 20 hm7G_associated_SNPs_25960 0 0 0 0 1 NTSR1 chr20:61386238 5'GT 61386238 Upstream 21bp 23676 chr16 67913505 67913505 1 + G A UCEC 67913506 + 67913486 67913526 41 GCAGCATTTGGAGAGTCTCGGCCCGAACTGGGCTCTGAGGG GCAGCATTTGGAGAGTCTCAGCCCGAACTGGGCTCTGAGGG < 41bp 0.505507167829894 0.723564772190994 NA NA prediction 0.436115208722199 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913506 chr16:67913505 nonsynonymous SNV 0.981 1 20 hm7G_associated_SNPs_25962 0 0 1 0 1 EDC4 chr16:67913490 3'AG 67913490 Downstream 16bp 23677 chr19 7075716 7075716 1 + G T COAD 7075717 + 7075697 7075737 41 AGAAGGACACACAGAGGGCGGAGAGCTGGTTAATGAGCTCC AGAAGGACACACAGAGGGCTGAGAGCTGGTTAATGAGCTCC < 41bp 0.373978839483524 0.718053289960727 NA NA prediction 0.436106579921454 Functional Gain - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7075717 chr19:7075716 stopgain 0.000 0 20 hm7G_associated_SNPs_25963 0 0 1 0 3 ZNF557 chr19:7075666 3'AG 7075666 Downstream 51bp 23678 chr19 7075716 7075716 1 + G T COAD 7075717 + 7075697 7075737 41 AGAAGGACACACAGAGGGCGGAGAGCTGGTTAATGAGCTCC AGAAGGACACACAGAGGGCTGAGAGCTGGTTAATGAGCTCC < 41bp 0.373978839483524 0.718053289960727 NA NA prediction 0.436106579921454 Functional Gain - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7075717 chr19:7075716 stopgain 0.000 0 20 hm7G_associated_SNPs_25963 0 0 1 0 3 ZNF557 chr19:7075687 3'AG 7075687 Downstream 30bp 23679 chr19 7075716 7075716 1 + G T COAD 7075717 + 7075697 7075737 41 AGAAGGACACACAGAGGGCGGAGAGCTGGTTAATGAGCTCC AGAAGGACACACAGAGGGCTGAGAGCTGGTTAATGAGCTCC < 41bp 0.373978839483524 0.718053289960727 NA NA prediction 0.436106579921454 Functional Gain - ZNF557 ENSG00000130544 CDS Human protein_coding chr19:7075717 chr19:7075716 stopgain 0.000 0 20 hm7G_associated_SNPs_25963 0 0 1 0 3 ZNF557 chr19:7075754 5'GT 7075754 Upstream 39bp 23680 chr13 53254252 53254252 1 + G T LUAD 53254253 + 53254233 53254273 41 TCAGCAGATCTATTCAGATGGTTCTGATGAAGTGAAACGTG TCAGCAGATCTATTCAGATTGTTCTGATGAAGTGAAACGTG < 41bp 0.667029823305621 0.885076543705221 NA NA prediction 0.4360934407992 Functional Gain - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53254253 chr13:53254252 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25964 0 0 1 0 1 SUGT1 chr13:53254290 5'GT 53254290 Upstream 39bp 23681 chr4 998096 998096 1 + G A COAD 998097 + 998077 998117 41 GTTCGAGCCCTGGACTACTGGGCCCGACCAGGCCCCTTCTC GTTCGAGCCCTGGACTACTAGGCCCGACCAGGCCCCTTCTC < 41bp 0.493904129711867 0.718044287029381 NA NA prediction 0.436088574058761 Functional Gain - IDUA ENSG00000127415 CDS Human protein_coding chr4:998097 chr4:998096 stopgain 1.000 1 20 hm7G_associated_SNPs_25965 0 0 0 0 1 IDUA chr4:998048 3'AG 998048 Downstream 49bp 23682 chr9 72459523 72459523 1 + G T LUSC 72459524 + 72459504 72459544 41 ATTCAACATATCGGCGACTGGGAACCGATGAATCCCCAGTA ATTCAACATATCGGCGACTTGGAACCGATGAATCCCCAGTA < 41bp 0.398739810362211 0.71804381290844 NA NA prediction 0.436087625816881 Functional Gain - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72459524 chr9:72459523 synonymous SNV . 0 20 hm7G_associated_SNPs_25966 0 0 0 0 2 C9orf135 chr9:72459433 3'AG 72459433 Downstream 91bp 23683 chr9 72459523 72459523 1 + G T LUSC 72459524 + 72459504 72459544 41 ATTCAACATATCGGCGACTGGGAACCGATGAATCCCCAGTA ATTCAACATATCGGCGACTTGGAACCGATGAATCCCCAGTA < 41bp 0.398739810362211 0.71804381290844 NA NA prediction 0.436087625816881 Functional Gain - C9orf135 ENSG00000204711 CDS Human protein_coding chr9:72459524 chr9:72459523 synonymous SNV . 0 20 hm7G_associated_SNPs_25966 0 0 0 0 2 C9orf135 chr9:72459541 5'GT 72459541 Upstream 19bp 23684 chr7 150932678 150932678 1 + G A STAD 150932679 + 150932659 150932699 41 CATTGACTCTCTGGGCGTCGGCTGTGTCTCACAGCACCAGG CATTGACTCTCTGGGCGTCAGCTGTGTCTCACAGCACCAGG < 41bp 0.495592380288906 0.718043035571566 NA NA prediction 0.436086071143132 Functional Gain - CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150932679 chr7:150932678 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_25967 0 0 1 0 1 CHPF2 chr7:150932698 5'GT 150932698 Upstream 21bp 23685 chr3 47361241 47361241 1 + G T STAD 47361242 + 47361222 47361262 41 ACATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAAGGA ACATGATGGAGTGCAAGCATGATGAGATTGTAATGCAAGGA < 41bp 0.682697187833874 0.900738822563238 NA NA prediction 0.436083269458729 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361242 chr3:47361241 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25968 0 0 1 0 2 KLHL18 chr3:47361143 3'AG 47361143 Downstream 99bp 23686 chr3 47361241 47361241 1 + G T STAD 47361242 + 47361222 47361262 41 ACATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAAGGA ACATGATGGAGTGCAAGCATGATGAGATTGTAATGCAAGGA < 41bp 0.682697187833874 0.900738822563238 NA NA prediction 0.436083269458729 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47361242 chr3:47361241 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_25968 0 0 1 0 2 KLHL18 chr3:47361273 5'GT 47361273 Upstream 33bp 23687 chr5 7873524 7873524 1 + G T UCEC 7873525 + 7873505 7873545 41 CAGCTCCTCTTGTTGTTGTGGTTTCTACCACGGGCACCGGA CAGCTCCTCTTGTTGTTGTTGTTTCTACCACGGGCACCGGA < 41bp 0.393774584834298 0.718030758735784 NA NA prediction 0.436061517471567 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873525 chr5:7873524 synonymous SNV . 0 20 hm7G_associated_SNPs_25970 0 0 0 0 1 MTRR chr5:7873486 3'AG 7873486 Downstream 39bp 23688 chr19 55377854 55377854 1 + G T STAD 55377855 + 55377835 55377875 41 AATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATAGGC AATGGACCAAGAGCCTGCGTGGGACAGAACAGTGAATAGGC < 41bp 0.384919907597849 0.718014790941022 NA NA prediction 0.436029581882045 Functional Gain - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377855 chr19:55377854 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_25972 0 0 0 0 2 KIR3DL2 chr19:55377825 3'AG 55377825 Downstream 30bp 23689 chr19 55377854 55377854 1 + G T STAD 55377855 + 55377835 55377875 41 AATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATAGGC AATGGACCAAGAGCCTGCGTGGGACAGAACAGTGAATAGGC < 41bp 0.384919907597849 0.718014790941022 NA NA prediction 0.436029581882045 Functional Gain - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377855 chr19:55377854 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_25972 0 0 0 0 2 KIR3DL2 chr19:55377877 5'GT 55377877 Upstream 24bp 23690 chr11 375479 375479 1 + G A STAD 375480 + 375460 375500 41 GTGGCGAGCTTTCCTGCCCGGCCTGAAGTTCGAGGTCATCA GTGGCGAGCTTTCCTGCCCAGCCTGAAGTTCGAGGTCATCA < 41bp 0.530138794515727 0.748153055743579 NA NA prediction 0.436028522455703 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:375480 chr11:375479 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_25973 0 0 1 0 2 B4GALNT4 chr11:375461 3'AG 375461 Downstream 19bp 23691 chr11 375479 375479 1 + G A STAD 375480 + 375460 375500 41 GTGGCGAGCTTTCCTGCCCGGCCTGAAGTTCGAGGTCATCA GTGGCGAGCTTTCCTGCCCAGCCTGAAGTTCGAGGTCATCA < 41bp 0.530138794515727 0.748153055743579 NA NA prediction 0.436028522455703 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:375480 chr11:375479 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_25973 0 0 1 0 2 B4GALNT4 chr11:375527 5'GT 375527 Upstream 49bp 23692 chr17 2894680 2894680 1 + G T UCEC 2894681 + 2894661 2894701 41 GGGACACGATCACACTGCAGGATTTCAAAGGGTGGGTTTTA GGGACACGATCACACTGCATGATTTCAAAGGGTGGGTTTTA < 41bp 0.373753301826597 0.718006976196939 NA NA prediction 0.436013952393877 Functional Gain - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2894681 chr17:2894680 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_25975 0 0 1 0 1 RAP1GAP2 chr17:2894591 3'AG 2894591 Downstream 90bp 23693 chr5 140021484 140021484 1 + G T SARC 140021485 + 140021465 140021505 41 AGCATGCGGACCCTGGTCGGGCTCCTGACCAGCAACCAGGC AGCATGCGGACCCTGGTCGTGCTCCTGACCAGCAACCAGGC < 41bp 0.688089335499269 0.9060721490438 NA NA prediction 0.435965627089062 Functional Gain - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140021485 chr5:140021484 nonsynonymous SNV 0.906 2 20 hm7G_associated_SNPs_25978 0 0 1 0 1 TMCO6 chr5:140021455 3'AG 140021455 Downstream 30bp 23694 chr11 68201226 68201226 1 + G A HNSC 68201227 + 68201207 68201247 41 GCCCAGTTCCCCTGCGCGCGGGGTCAGTGTGTGGACCTGCG GCCCAGTTCCCCTGCGCGCAGGGTCAGTGTGTGGACCTGCG < 41bp 0.523962144883815 0.741938423201953 NA NA prediction 0.435952556636277 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68201227 chr11:68201226 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_25980 0 0 1 0 1 LRP5 chr11:68201306 5'GT 68201306 Upstream 81bp 23695 chr3 11064133 11064133 1 + G T STAD 11064134 + 11064114 11064154 41 TGTATTTCTGTATCTGGAAGGGTGTTGGCTGGACTGGAAAG TGTATTTCTGTATCTGGAATGGTGTTGGCTGGACTGGAAAG < 41bp 0.683446105484388 0.901410535112772 NA NA prediction 0.435928859256768 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11064134 chr3:11064133 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_25982 0 0 0 0 1 SLC6A1 chr3:11064154 5'GT 11064154 Upstream 22bp 23696 chr19 49633303 49633303 1 + G T UCEC 49633304 + 49633284 49633324 41 GGTCAGGGCTGGAAGAGCCGGGCAAGGATGGGGATGGGCAG GGTCAGGGCTGGAAGAGCCTGGCAAGGATGGGGATGGGCAG < 41bp 0.69030957214276 0.908262540830157 NA NA prediction 0.435905937374795 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49633304 chr19:49633303 synonymous SNV . 0 20 hm7G_associated_SNPs_25985 0 0 1 0 2 PPFIA3 chr19:49633250 3'AG 49633250 Downstream 54bp 23697 chr19 49633303 49633303 1 + G T UCEC 49633304 + 49633284 49633324 41 GGTCAGGGCTGGAAGAGCCGGGCAAGGATGGGGATGGGCAG GGTCAGGGCTGGAAGAGCCTGGCAAGGATGGGGATGGGCAG < 41bp 0.69030957214276 0.908262540830157 NA NA prediction 0.435905937374795 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49633304 chr19:49633303 synonymous SNV . 0 20 hm7G_associated_SNPs_25985 0 0 1 0 2 PPFIA3 chr19:49633324 5'GT 49633324 Upstream 22bp 23698 chr12 104995734 104995734 1 + C T UCEC 104995735 + 104995715 104995755 41 CTGCTGCCGGAAGGGGTCCCGAAGCCCCCTGCAGGAACTCT CTGCTGCCGGAAGGGGTCCTGAAGCCCCCTGCAGGAACTCT < 41bp 0.503774347355748 0.721702571076154 NA NA prediction 0.435856447440812 Functional Gain - CHST11 ENSG00000171310 CDS Human protein_coding chr12:104995735 chr12:104995734 stopgain 0.991 0 20 hm7G_associated_SNPs_25989 0 0 0 0 2 CHST11 chr12:104995684 3'AG 104995684 Downstream 51bp 23699 chr12 104995734 104995734 1 + C T UCEC 104995735 + 104995715 104995755 41 CTGCTGCCGGAAGGGGTCCCGAAGCCCCCTGCAGGAACTCT CTGCTGCCGGAAGGGGTCCTGAAGCCCCCTGCAGGAACTCT < 41bp 0.503774347355748 0.721702571076154 NA NA prediction 0.435856447440812 Functional Gain - CHST11 ENSG00000171310 CDS Human protein_coding chr12:104995735 chr12:104995734 stopgain 0.991 0 20 hm7G_associated_SNPs_25989 0 0 0 0 2 CHST11 chr12:104995769 5'GT 104995769 Upstream 36bp 23700 chr15 93541812 93541812 1 + G T LGG 93541813 + 93541793 93541833 41 TGTTGAAGCTGCTCAGAAAGGGTCTGGAGAAGAAGGGGGCT TGTTGAAGCTGCTCAGAAATGGTCTGGAGAAGAAGGGGGCT < 41bp 0.681145534864863 0.899052490601421 NA NA prediction 0.435813911473117 Functional Gain - CHD2 ENSG00000173575 CDS Human protein_coding chr15:93541813 chr15:93541812 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25993 0 0 1 0 2 CHD2 chr15:93541729 3'AG 93541729 Downstream 84bp 23701 chr15 93541812 93541812 1 + G T LGG 93541813 + 93541793 93541833 41 TGTTGAAGCTGCTCAGAAAGGGTCTGGAGAAGAAGGGGGCT TGTTGAAGCTGCTCAGAAATGGTCTGGAGAAGAAGGGGGCT < 41bp 0.681145534864863 0.899052490601421 NA NA prediction 0.435813911473117 Functional Gain - CHD2 ENSG00000173575 CDS Human protein_coding chr15:93541813 chr15:93541812 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25993 0 0 1 0 2 CHD2 chr15:93541851 5'GT 93541851 Upstream 40bp 23702 chr16 72141583 72141583 1 + C T LUAD 72141584 + 72141564 72141604 41 CGGCTGATGGTGGAGTTCCCGCTGGACCCTGCCCTGTCCAA CGGCTGATGGTGGAGTTCCTGCTGGACCCTGCCCTGTCCAA < 41bp 0.501367964926475 0.719266998147697 NA NA prediction 0.435798066442444 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141584 chr16:72141583 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_25995 0 0 1 0 1 DHX38 chr16:72141544 3'AG 72141544 Downstream 40bp 23703 chr21 47542031 47542031 1 + G A UCEC 47542032 + 47542012 47542052 41 CCTCCTCCAGGGAGACCCCGGCAGGCCTGGATTCAGCTACC CCTCCTCCAGGGAGACCCCAGCAGGCCTGGATTCAGCTACC < 41bp 0.519704043317318 0.737600484272351 NA NA prediction 0.435792881910066 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47542032 chr21:47542031 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_25996 0 0 1 0 2 COL6A2 chr21:47542022 3'AG 47542022 Downstream 10bp 23704 chr21 47542031 47542031 1 + G A UCEC 47542032 + 47542012 47542052 41 CCTCCTCCAGGGAGACCCCGGCAGGCCTGGATTCAGCTACC CCTCCTCCAGGGAGACCCCAGCAGGCCTGGATTCAGCTACC < 41bp 0.519704043317318 0.737600484272351 NA NA prediction 0.435792881910066 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47542032 chr21:47542031 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_25996 0 0 1 0 2 COL6A2 chr21:47542072 5'GT 47542072 Upstream 42bp 23705 chr2 162279953 162279953 1 + G T LUAD 162279954 + 162279934 162279974 41 GCGCTCGCAGATCGTGCCCGGGGCCCGCTACGCCATGGCCG GCGCTCGCAGATCGTGCCCTGGGCCCGCTACGCCATGGCCG < 41bp 0.684607331557565 0.902498997594308 NA NA prediction 0.435783332073486 Functional Gain - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162279954 chr2:162279953 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_25998 0 0 1 0 1 TBR1 chr2:162279880 3'AG 162279880 Downstream 74bp 23706 chr1 95710166 95710166 1 + G T LUAD 95710167 + 95710147 95710187 41 GTCAAAATTGTGGAGAAGTGGGCTTCAGATTTAAGGCTGAC GTCAAAATTGTGGAGAAGTTGGCTTCAGATTTAAGGCTGAC < 41bp 0.651151514096371 0.869008830650162 NA NA prediction 0.435714633107582 Functional Gain - RWDD3 ENSG00000122481 CDS Human protein_coding chr1:95710167 chr1:95710166 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26001 0 0 1 0 3 RWDD3 chr1:95710121 3'AG 95710121 Downstream 46bp 23707 chr1 95710166 95710166 1 + G T LUAD 95710167 + 95710147 95710187 41 GTCAAAATTGTGGAGAAGTGGGCTTCAGATTTAAGGCTGAC GTCAAAATTGTGGAGAAGTTGGCTTCAGATTTAAGGCTGAC < 41bp 0.651151514096371 0.869008830650162 NA NA prediction 0.435714633107582 Functional Gain - RWDD3 ENSG00000122481 CDS Human protein_coding chr1:95710167 chr1:95710166 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26001 0 0 1 0 3 RWDD3 chr1:95710207 5'GT 95710207 Upstream 42bp 23708 chr1 95710166 95710166 1 + G T LUAD 95710167 + 95710147 95710187 41 GTCAAAATTGTGGAGAAGTGGGCTTCAGATTTAAGGCTGAC GTCAAAATTGTGGAGAAGTTGGCTTCAGATTTAAGGCTGAC < 41bp 0.651151514096371 0.869008830650162 NA NA prediction 0.435714633107582 Functional Gain - RWDD3 ENSG00000122481 CDS Human protein_coding chr1:95710167 chr1:95710166 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26001 0 0 1 0 3 RWDD3 chr1:95710254 5'GT 95710254 Upstream 89bp 23709 chr8 97797471 97797471 1 + G T LUSC 97797472 + 97797452 97797492 41 AATACCCCACTGGGAGAGGGGAGAAGAATCAGCTGTGATGC AATACCCCACTGGGAGAGGTGAGAAGAATCAGCTGTGATGC < 41bp 0.394515225234939 0.717854935580844 NA NA prediction 0.435709871161687 Functional Gain - CPQ ENSG00000104324 CDS Human protein_coding chr8:97797472 chr8:97797471 stopgain 1.000 1 20 hm7G_associated_SNPs_26002 0 0 1 0 1 CPQ chr8:97797558 5'GT 97797558 Upstream 88bp 23710 chr19 50031900 50031900 1 + G T UCEC 50031901 + 50031881 50031921 41 ACTTCCAGTACGACCATGAGGCTTTCCTGGGACGGGAAGTG ACTTCCAGTACGACCATGATGCTTTCCTGGGACGGGAAGTG < 41bp 0.691169356694054 0.909022844478372 NA NA prediction 0.435706975568636 Functional Gain - RCN3 ENSG00000142552 CDS Human protein_coding chr19:50031901 chr19:50031900 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26004 0 0 0 0 1 RCN3 chr19:50031971 5'GT 50031971 Upstream 72bp 23711 chr3 50609158 50609158 1 + G A UCEC 50609159 + 50609139 50609179 41 AGTTTCAGAGCCTGAGGCCGGCACTTTGGACCCAGCCCTTG AGTTTCAGAGCCTGAGGCCAGCACTTTGGACCCAGCCCTTG < 41bp 0.508115125634382 0.725939317381466 NA NA prediction 0.43564838349417 Functional Gain - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50609159 chr3:50609158 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26006 0 0 1 0 2 HEMK1 chr3:50609141 3'AG 50609141 Downstream 18bp 23712 chr3 50609158 50609158 1 + G A UCEC 50609159 + 50609139 50609179 41 AGTTTCAGAGCCTGAGGCCGGCACTTTGGACCCAGCCCTTG AGTTTCAGAGCCTGAGGCCAGCACTTTGGACCCAGCCCTTG < 41bp 0.508115125634382 0.725939317381466 NA NA prediction 0.43564838349417 Functional Gain - HEMK1 ENSG00000114735 CDS Human protein_coding chr3:50609159 chr3:50609158 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26006 0 0 1 0 2 HEMK1 chr3:50609232 5'GT 50609232 Upstream 75bp 23713 chr10 27793301 27793301 1 + G T UCEC 27793302 + 27793282 27793322 41 AGCGGAACGGGGTCAGGATGGACGAGGACGTGCTAACCACC AGCGGAACGGGGTCAGGATTGACGAGGACGTGCTAACCACC < 41bp 0.665198935848208 0.883014150670553 NA NA prediction 0.435630429644689 Functional Gain - RAB18 ENSG00000099246 CDS Human protein_coding chr10:27793302 chr10:27793301 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_26009 0 0 1 0 1 RAB18 chr10:27793366 5'GT 27793366 Upstream 66bp 23714 chr14 52182105 52182105 1 + G T KIRP 52182106 + 52182086 52182126 41 GGAAGCTCATATACTACACGGGGTGCCCCATGCGCTCCAGA GGAAGCTCATATACTACACTGGGTGCCCCATGCGCTCCAGA < 41bp 0.515756942569554 0.733551248221889 NA NA prediction 0.435588611304669 Functional Gain - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52182106 chr14:52182105 synonymous SNV . 0 20 hm7G_associated_SNPs_26013 0 0 1 0 1 FRMD6 chr14:52182043 3'AG 52182043 Downstream 63bp 23715 chr13 25284611 25284611 1 + G T UCEC 25284612 + 25284592 25284632 41 TAACAGACAAGGTACCAGAGGGAATACCTAGAATGGACGGG TAACAGACAAGGTACCAGATGGAATACCTAGAATGGACGGG < 41bp 0.684042157084868 0.90183498614012 NA NA prediction 0.435585658110504 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25284612 chr13:25284611 nonsynonymous SNV 0.123 5 20 hm7G_associated_SNPs_26014 0 0 0 0 1 ATP12A chr13:25284598 3'AG 25284598 Downstream 14bp 23716 chr1 27630135 27630135 1 + G A rs138603035 27630136 + 27630116 27630156 41 GAAGAAGGGACCTGGTGGCGGCGCCCCAGTCCGCCTCCGCA GAAGAAGGGACCTGGTGGCAGCGCCCCAGTCCGCCTCCGCA < 41bp 0.502334586407411 0.720113239236353 NA NA prediction 0.435557305657883 Functional Gain - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27630136 chr1:27630135 nonsynonymous SNV 0.845 2 20 hm7G_associated_SNPs_26016 0 0 1 0 1 WDTC1 chr1:27630112 3'AG 27630112 Downstream 24bp 23717 chr16 84485667 84485667 1 + G A SKCM 84485668 + 84485648 84485688 41 GTCTGTGAAGATGATAACGGGGGATGCCCTGGAGACGGCCT GTCTGTGAAGATGATAACGAGGGATGCCCTGGAGACGGCCT < 41bp 0.506012888852823 0.723786402124946 NA NA prediction 0.435547026544246 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84485668 chr16:84485667 nonsynonymous SNV 0.005 5 20 hm7G_associated_SNPs_26018 0 0 0 0 1 ATP2C2 chr16:84485697 5'GT 84485697 Upstream 31bp 23718 chr17 56276470 56276470 1 + G T LUSC 56276471 + 56276451 56276491 41 TTTATGCGAGAGCACAACCGGCTGGCCACCGAGCTGAGACG TTTATGCGAGAGCACAACCTGCTGGCCACCGAGCTGAGACG < 41bp 0.689793444993536 0.9075653552463 NA NA prediction 0.435543820505529 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56276471 chr17:56276470 nonsynonymous SNV 0.597 4 20 hm7G_associated_SNPs_26019 0 0 0 0 2 EPX chr17:56276401 3'AG 56276401 Downstream 70bp 23719 chr17 56276470 56276470 1 + G T LUSC 56276471 + 56276451 56276491 41 TTTATGCGAGAGCACAACCGGCTGGCCACCGAGCTGAGACG TTTATGCGAGAGCACAACCTGCTGGCCACCGAGCTGAGACG < 41bp 0.689793444993536 0.9075653552463 NA NA prediction 0.435543820505529 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56276471 chr17:56276470 nonsynonymous SNV 0.597 4 20 hm7G_associated_SNPs_26019 0 0 0 0 2 EPX chr17:56276561 5'GT 56276561 Upstream 92bp 23720 chr9 139229082 139229082 1 + G A STAD 139229083 + 139229063 139229103 41 CTTCTACCTGAAGGAGCACGGCCGGGCGCTGGAATACCACA CTTCTACCTGAAGGAGCACAGCCGGGCGCTGGAATACCACA < 41bp 0.529526668794532 0.747268185903641 NA NA prediction 0.435483034218217 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139229083 chr9:139229082 nonsynonymous SNV 0.047 0 20 hm7G_associated_SNPs_26021 0 0 0 0 1 GPSM1 chr9:139229125 5'GT 139229125 Upstream 44bp 23721 chr11 120998980 120998980 1 + G A SKCM 120998981 + 120998961 120999001 41 CCCGATGCAGGACCTGCTTGGCTGCGGGGACTTCGGATCCT CCCGATGCAGGACCTGCTTAGCTGCGGGGACTTCGGATCCT < 41bp 0.510164883940605 0.72790297643533 NA NA prediction 0.43547618498945 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120998981 chr11:120998980 stopgain 0.065 1 20 hm7G_associated_SNPs_26022 0 0 0 0 1 TECTA chr11:120999053 5'GT 120999053 Upstream 74bp 23722 chrX 65417598 65417598 1 + C T OV 65417599 + 65417579 65417619 41 GGACAGTCCCCCCTCATGCCGGTCCCACTGCTCAGGATCCT GGACAGTCCCCCCTCATGCTGGTCCCACTGCTCAGGATCCT < 41bp 0.502472804414855 0.720210432908073 NA NA prediction 0.435475256986438 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65417599 chrX:65417598 synonymous SNV . 0 20 hm7G_associated_SNPs_26023 0 0 1 0 1 HEPH chrX:65417525 3'AG 65417525 Downstream 74bp 23723 chr11 60617429 60617429 1 + G A UCEC 60617430 + 60617410 60617450 41 CAGGAGAAGAAACAGCGCCGGGCTGAGAACCTGAAACGCCG CAGGAGAAGAAACAGCGCCAGGCTGAGAACCTGAAACGCCG < 41bp 0.514951497626418 0.732682958961318 NA NA prediction 0.4354629226698 Functional Gain - CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60617430 chr11:60617429 nonsynonymous SNV 0.434 3 20 hm7G_associated_SNPs_26024 0 0 1 0 2 CCDC86 chr11:60617413 3'AG 60617413 Downstream 17bp 23724 chr11 60617429 60617429 1 + G A UCEC 60617430 + 60617410 60617450 41 CAGGAGAAGAAACAGCGCCGGGCTGAGAACCTGAAACGCCG CAGGAGAAGAAACAGCGCCAGGCTGAGAACCTGAAACGCCG < 41bp 0.514951497626418 0.732682958961318 NA NA prediction 0.4354629226698 Functional Gain - CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60617430 chr11:60617429 nonsynonymous SNV 0.434 3 20 hm7G_associated_SNPs_26024 0 0 1 0 2 CCDC86 chr11:60617487 5'GT 60617487 Upstream 59bp 23725 chr9 34660894 34660894 1 + G A SKCM 34660895 + 34660875 34660915 41 GGATGGATCCCCAAAGCCTGGGTTCTTGGCCTCAGTGATTC GGATGGATCCCCAAAGCCTAGGTTCTTGGCCTCAGTGATTC < 41bp 0.502335926879334 0.720055227625659 NA NA prediction 0.435438601492651 Functional Gain - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34660895 chr9:34660894 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_26026 0 0 1 0 2 IL11RA chr9:34660851 3'AG 34660851 Downstream 44bp 23726 chr9 34660894 34660894 1 + G A SKCM 34660895 + 34660875 34660915 41 GGATGGATCCCCAAAGCCTGGGTTCTTGGCCTCAGTGATTC GGATGGATCCCCAAAGCCTAGGTTCTTGGCCTCAGTGATTC < 41bp 0.502335926879334 0.720055227625659 NA NA prediction 0.435438601492651 Functional Gain - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34660895 chr9:34660894 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_26026 0 0 1 0 2 IL11RA chr9:34660933 5'GT 34660933 Upstream 40bp 23727 chr16 461508 461508 1 + G A SKCM 461509 + 461489 461529 41 GTGCTGGTGGCCGATGGCGGGGCATGGTTGACGTTCCCAAA GTGCTGGTGGCCGATGGCGAGGCATGGTTGACGTTCCCAAA < 41bp 0.505830386485846 0.723544399640453 NA NA prediction 0.435428026309214 Functional Gain - DECR2 ENSG00000242612 CDS Human protein_coding chr16:461509 chr16:461508 nonsynonymous SNV 0.006 5 20 hm7G_associated_SNPs_26028 0 0 1 0 1 DECR2 chr16:461578 5'GT 461578 Upstream 71bp 23728 chr20 61946779 61946779 1 + G A rs201063299 61946780 + 61946760 61946800 41 CCCAGCCCTCCGCCCTGACGGCTCCCTCCCAGGTGGGTCCT CCCAGCCCTCCGCCCTGACAGCTCCCTCCCAGGTGGGTCCT < 41bp 0.48224701601913 0.717707627558953 NA NA prediction 0.435415255117905 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61946780 chr20:61946779 nonsynonymous SNV 0.011 1 20 hm7G_associated_SNPs_26029 0 0 0 0 2 COL20A1 chr20:61946756 3'AG 61946756 Downstream 24bp 23729 chr20 61946779 61946779 1 + G A rs201063299 61946780 + 61946760 61946800 41 CCCAGCCCTCCGCCCTGACGGCTCCCTCCCAGGTGGGTCCT CCCAGCCCTCCGCCCTGACAGCTCCCTCCCAGGTGGGTCCT < 41bp 0.48224701601913 0.717707627558953 NA NA prediction 0.435415255117905 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61946780 chr20:61946779 nonsynonymous SNV 0.011 1 20 hm7G_associated_SNPs_26029 0 0 0 0 2 COL20A1 chr20:61946791 5'GT 61946791 Upstream 13bp 23730 chr7 76110003 76110003 1 + G T LUSC 76110004 + 76109984 76110024 41 GTTTTGGGCTTGGGAGCCTGGCCCACAGCATCCCCTTGGGC GTTTTGGGCTTGGGAGCCTTGCCCACAGCATCCCCTTGGGC < 41bp 0.360708225358802 0.7176967673225 NA NA prediction 0.435393534645001 Functional Gain - DTX2 ENSG00000091073 CDS Human protein_coding chr7:76110004 chr7:76110003 synonymous SNV . 0 20 hm7G_associated_SNPs_26031 0 0 0 0 1 DTX2 chr7:76110094 5'GT 76110094 Upstream 92bp 23731 chr16 50785731 50785731 1 + G T LAML 50785732 + 50785712 50785752 41 CAGAGTTTCTTTGAAGGTTGGAGAAACAATAGAATCTGGAA CAGAGTTTCTTTGAAGGTTTGAGAAACAATAGAATCTGGAA < 41bp 0.410464753773799 0.717692925106716 NA NA prediction 0.435385850213432 Functional Gain - CYLD ENSG00000083799 CDS Human protein_coding chr16:50785732 chr16:50785731 stopgain 1.000 1 20 hm7G_associated_SNPs_26033 0 0 1 0 1 CYLD chr16:50785817 5'GT 50785817 Upstream 87bp 23732 chr1 17674503 17674503 1 + G T UCEC 17674504 + 17674484 17674524 41 GTGGTCTTCGACTCTCCAAGGAACAGAGGCCTGAAGGAGTT GTGGTCTTCGACTCTCCAATGAACAGAGGCCTGAAGGAGTT < 41bp 0.687251320129395 0.904917334012066 NA NA prediction 0.435332027765342 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17674504 chr1:17674503 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_26036 0 0 0 0 2 PADI4 chr1:17674436 3'AG 17674436 Downstream 68bp 23733 chr1 17674503 17674503 1 + G T UCEC 17674504 + 17674484 17674524 41 GTGGTCTTCGACTCTCCAAGGAACAGAGGCCTGAAGGAGTT GTGGTCTTCGACTCTCCAATGAACAGAGGCCTGAAGGAGTT < 41bp 0.687251320129395 0.904917334012066 NA NA prediction 0.435332027765342 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17674504 chr1:17674503 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_26036 0 0 0 0 2 PADI4 chr1:17674543 5'GT 17674543 Upstream 41bp 23734 chr6 28264625 28264625 1 + G T LUAD 28264626 + 28264606 28264646 41 CTGAGGAAGAAACAGCCCAGGCCGTTGCTGCAGAGAAGTGG CTGAGGAAGAAACAGCCCATGCCGTTGCTGCAGAGAAGTGG < 41bp 0.379012141888181 0.717651701755797 NA NA prediction 0.435303403511594 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28264626 chr6:28264625 nonsynonymous SNV 0.486 1 20 hm7G_associated_SNPs_26039 0 0 1 0 2 PGBD1 chr6:28264593 3'AG 28264593 Downstream 33bp 23735 chr6 28264625 28264625 1 + G T LUAD 28264626 + 28264606 28264646 41 CTGAGGAAGAAACAGCCCAGGCCGTTGCTGCAGAGAAGTGG CTGAGGAAGAAACAGCCCATGCCGTTGCTGCAGAGAAGTGG < 41bp 0.379012141888181 0.717651701755797 NA NA prediction 0.435303403511594 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28264626 chr6:28264625 nonsynonymous SNV 0.486 1 20 hm7G_associated_SNPs_26039 0 0 1 0 2 PGBD1 chr6:28264722 5'GT 28264722 Upstream 98bp 23736 chr6 158492769 158492769 1 + G T UCEC 158492770 + 158492750 158492790 41 TGACGGCCGGGCAGTCCCAGGTGAAGGAGCGGAATGAAGAC TGACGGCCGGGCAGTCCCATGTGAAGGAGCGGAATGAAGAC < 41bp 0.371686336573588 0.717642666810955 NA NA prediction 0.43528533362191 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492770 chr6:158492769 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26041 0 0 1 0 1 SYNJ2 chr6:158492826 5'GT 158492826 Upstream 58bp 23737 chr4 15704874 15704874 1 + G A rs2302468 15704875 + 15704855 15704895 41 GCGCGCGCGCGGTGGCGCGGGGAGGGCACCAGCGCACACTT GCGCGCGCGCGGTGGCGCGAGGAGGGCACCAGCGCACACTT < 41bp 0.494621841991835 0.71764103845404 NA NA prediction 0.435282076908081 Functional Gain - BST1 ENSG00000109743 CDS Human protein_coding chr4:15704875 chr4:15704874 nonsynonymous SNV 0.544 3 20 hm7G_associated_SNPs_26042 0 0 0 0 1 BST1 chr4:15704955 5'GT 15704955 Upstream 82bp 23738 chrX 65393493 65393493 1 + G T rs200699615 65393494 + 65393474 65393514 41 TGACTCTGTTCCCCCGGGGGGCAGCCATATCTACAACTGGA TGACTCTGTTCCCCCGGGGTGCAGCCATATCTACAACTGGA < 41bp 0.370764945323017 0.717637441105811 NA NA prediction 0.435274882211623 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65393494 chrX:65393493 nonsynonymous SNV 0.604 5 20 hm7G_associated_SNPs_26043 0 0 1 0 1 HEPH chrX:65393431 3'AG 65393431 Downstream 63bp 23739 chr1 219366582 219366582 1 + G T GBM 219366583 + 219366563 219366603 41 AGTGGCATCAAGAAGAACAGGATATTAATAGGTAAGACCTT AGTGGCATCAAGAAGAACATGATATTAATAGGTAAGACCTT < 41bp 0.656068051474645 0.873702673529391 NA NA prediction 0.435269244109492 Functional Gain - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219366583 chr1:219366582 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_26044 0 0 1 0 1 LYPLAL1 chr1:219366593 5'GT 219366593 Upstream 12bp 23740 chr11 22397614 22397614 1 + G T LUAD 22397615 + 22397595 22397635 41 ATTCTTGGTACTTGCAGTGGGATTCAGTGGATTTGCTATAT ATTCTTGGTACTTGCAGTGTGATTCAGTGGATTTGCTATAT < 41bp 0.665053248741365 0.882683181628419 NA NA prediction 0.43525986577411 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22397615 chr11:22397614 stopgain 1.000 1 20 hm7G_associated_SNPs_26046 0 0 0 0 2 SLC17A6 chr11:22397528 3'AG 22397528 Downstream 87bp 23741 chr11 22397614 22397614 1 + G T LUAD 22397615 + 22397595 22397635 41 ATTCTTGGTACTTGCAGTGGGATTCAGTGGATTTGCTATAT ATTCTTGGTACTTGCAGTGTGATTCAGTGGATTTGCTATAT < 41bp 0.665053248741365 0.882683181628419 NA NA prediction 0.43525986577411 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22397615 chr11:22397614 stopgain 1.000 1 20 hm7G_associated_SNPs_26046 0 0 0 0 2 SLC17A6 chr11:22397638 5'GT 22397638 Upstream 25bp 23742 chr12 20870079 20870079 1 + G T BLCA 20870080 + 20870060 20870100 41 GTGCAGGGTGTGTGCAGACGGTTGCAATTATAGGACCAATC GTGCAGGGTGTGTGCAGACTGTTGCAATTATAGGACCAATC < 41bp 0.401767572691172 0.717612851960792 NA NA prediction 0.435225703921583 Functional Gain - SLCO1C1 ENSG00000139155 CDS Human protein_coding chr12:20870080 chr12:20870079 synonymous SNV . 0 20 hm7G_associated_SNPs_26049 0 0 0 0 1 SLCO1C1 chr12:20870164 5'GT 20870164 Upstream 86bp 23743 chr7 73085385 73085385 1 + G A SKCM 73085386 + 73085366 73085406 41 TCGGGGAGCAAAGCCTGGAGGCCTTCCTGCCTGCCTTCCAG TCGGGGAGCAAAGCCTGGAAGCCTTCCTGCCTGCCTTCCAG < 41bp 0.490102384535979 0.717606646269315 NA NA prediction 0.435213292538631 Functional Gain - VPS37D ENSG00000176428 CDS Human protein_coding chr7:73085386 chr7:73085385 synonymous SNV . 0 20 hm7G_associated_SNPs_26051 0 0 0 0 1 VPS37D chr7:73085344 3'AG 73085344 Downstream 42bp 23744 chr11 68696781 68696781 1 + G A HNSC 68696782 + 68696762 68696802 41 AGGCCAGAAAGTGCATCCTGGCGGGCGATCACAAGCAGCTG AGGCCAGAAAGTGCATCCTAGCGGGCGATCACAAGCAGCTG < 41bp 0.517329792849062 0.73493538253048 NA NA prediction 0.435211179362837 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68696782 chr11:68696781 synonymous SNV . 0 20 hm7G_associated_SNPs_26052 0 0 1 0 1 IGHMBP2 chr11:68696825 5'GT 68696825 Upstream 45bp 23745 chr22 24466846 24466846 1 + G A LGG 24466847 + 24466827 24466867 41 AGATGGTGAACTCAGGTGAGGCTGCCGCCAAGGAGGAGTGG AGATGGTGAACTCAGGTGAAGCTGCCGCCAAGGAGGAGTGG < 41bp 0.497412016360551 0.717596217032655 NA NA prediction 0.43519243406531 Functional Gain - CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24466847 chr22:24466846 synonymous SNV . 0 20 hm7G_associated_SNPs_26053 0 0 1 0 1 CABIN1 chr22:24466751 3'AG 24466751 Downstream 96bp 23746 chr22 23603674 23603674 1 + C T STAD 23603675 + 23603655 23603695 41 CTATGATGGGCTCTTCCCCCGCGTGCAGCAGTGGAGCCACC CTATGATGGGCTCTTCCCCTGCGTGCAGCAGTGGAGCCACC < 41bp 0.502629344567352 0.720223952552557 NA NA prediction 0.43518921597041 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23603675 chr22:23603674 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_26054 0 0 1 0 1 BCR chr22:23603727 5'GT 23603727 Upstream 54bp 23747 chr19 18968185 18968185 1 + G A THYM 18968186 + 18968166 18968206 41 TGGTGATGTGCAAGAAGGCGGCCAAGGCCGGGCTGTCACAG TGGTGATGTGCAAGAAGGCAGCCAAGGCCGGGCTGTCACAG < 41bp 0.519195348410713 0.736787475188462 NA NA prediction 0.435184253555499 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18968186 chr19:18968185 synonymous SNV . 0 20 hm7G_associated_SNPs_26055 0 0 1 0 1 UPF1 chr19:18968129 3'AG 18968129 Downstream 57bp 23748 chr9 35794079 35794079 1 + G A UCEC 35794080 + 35794060 35794100 41 GCACCCGGGAACAGGCCCAGGCCCTCAGAGAGGCCTTTCAG GCACCCGGGAACAGGCCCAAGCCCTCAGAGAGGCCTTTCAG < 41bp 0.514903550269766 0.732494921488982 NA NA prediction 0.435182742438433 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35794080 chr9:35794079 synonymous SNV . 0 20 hm7G_associated_SNPs_26056 0 0 0 0 1 NPR2 chr9:35794100 5'GT 35794100 Upstream 22bp 23749 chr16 57734079 57734079 1 + G A UCEC 57734080 + 57734060 57734100 41 TTCGTGAGCACAACCCTCCGGCCCACACTGATGCCCTACCC TTCGTGAGCACAACCCTCCAGCCCACACTGATGCCCTACCC < 41bp 0.505942913609817 0.723533570139643 NA NA prediction 0.435181313059652 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57734080 chr16:57734079 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_26057 0 0 0 0 1 DRC7 chr16:57734057 3'AG 57734057 Downstream 23bp 23750 chr1 175049339 175049339 1 + G A SKCM 175049340 + 175049320 175049360 41 AGCTGCTCAAGAACACGGAGGATTCTCTGCTGGTGAGCTGG AGCTGCTCAAGAACACGGAAGATTCTCTGCTGGTGAGCTGG < 41bp 0.511850610621238 0.729437834979435 NA NA prediction 0.435174448716394 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175049340 chr1:175049339 synonymous SNV . 0 20 hm7G_associated_SNPs_26058 0 0 0 0 1 TNN chr1:175049299 3'AG 175049299 Downstream 41bp 23751 chr12 272700 272700 1 + G A UCEC 272701 + 272681 272721 41 CGCCTGGTGTGCTGCAGCCGGCTCTTCGAGGTGACGGATGT CGCCTGGTGTGCTGCAGCCAGCTCTTCGAGGTGACGGATGT < 41bp 0.514391537606988 0.731972994081339 NA NA prediction 0.435162912948701 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:272701 chr12:272700 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26061 0 0 0 0 2 IQSEC3 chr12:272660 3'AG 272660 Downstream 41bp 23752 chr12 272700 272700 1 + G A UCEC 272701 + 272681 272721 41 CGCCTGGTGTGCTGCAGCCGGCTCTTCGAGGTGACGGATGT CGCCTGGTGTGCTGCAGCCAGCTCTTCGAGGTGACGGATGT < 41bp 0.514391537606988 0.731972994081339 NA NA prediction 0.435162912948701 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:272701 chr12:272700 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26061 0 0 0 0 2 IQSEC3 chr12:272785 5'GT 272785 Upstream 86bp 23753 chr12 119563241 119563241 1 + C T COAD 119563242 + 119563222 119563262 41 CCATCACCGCTGCCCCTCGCGGTCCCAGAGCTCGGAGTCCC CCATCACCGCTGCCCCTCGTGGTCCCAGAGCTCGGAGTCCC < 41bp 0.499831115711079 0.717580156109687 NA NA prediction 0.435160312219373 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119563242 chr12:119563241 nonsynonymous SNV 0.373 4 20 hm7G_associated_SNPs_26062 0 0 1 0 2 SRRM4 chr12:119563186 3'AG 119563186 Downstream 56bp 23754 chr12 119563241 119563241 1 + C T COAD 119563242 + 119563222 119563262 41 CCATCACCGCTGCCCCTCGCGGTCCCAGAGCTCGGAGTCCC CCATCACCGCTGCCCCTCGTGGTCCCAGAGCTCGGAGTCCC < 41bp 0.499831115711079 0.717580156109687 NA NA prediction 0.435160312219373 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119563242 chr12:119563241 nonsynonymous SNV 0.373 4 20 hm7G_associated_SNPs_26062 0 0 1 0 2 SRRM4 chr12:119563284 5'GT 119563284 Upstream 44bp 23755 chr19 35422794 35422794 1 + G T LUAD 35422795 + 35422775 35422815 41 CAGTGACATTTGAGGATGTGGCCATAGCCTTCTCCCAGCAG CAGTGACATTTGAGGATGTTGCCATAGCCTTCTCCCAGCAG < 41bp 0.41326295956647 0.717577469187375 NA NA prediction 0.43515493837475 Functional Gain - ZNF30 ENSG00000168661 CDS Human protein_coding chr19:35422795 chr19:35422794 synonymous SNV . 0 20 hm7G_associated_SNPs_26063 0 0 1 0 1 ZNF30 chr19:35422747 3'AG 35422747 Downstream 48bp 23756 chr2 95942026 95942026 1 + G A LUAD 95942027 + 95942007 95942047 41 AGCGCACGCATGAACAGATGGGCCCCAGCATCGAGGCCATG AGCGCACGCATGAACAGATAGGCCCCAGCATCGAGGCCATG < 41bp 0.545012291076245 0.762587004914643 NA NA prediction 0.435149427676794 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95942027 chr2:95942026 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_26064 0 0 0 0 2 PROM2 chr2:95941975 3'AG 95941975 Downstream 52bp 23757 chr2 95942026 95942026 1 + G A LUAD 95942027 + 95942007 95942047 41 AGCGCACGCATGAACAGATGGGCCCCAGCATCGAGGCCATG AGCGCACGCATGAACAGATAGGCCCCAGCATCGAGGCCATG < 41bp 0.545012291076245 0.762587004914643 NA NA prediction 0.435149427676794 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95942027 chr2:95942026 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_26064 0 0 0 0 2 PROM2 chr2:95942095 5'GT 95942095 Upstream 70bp 23758 chr12 113435403 113435403 1 + G T BRCA 113435404 + 113435384 113435424 41 GGTGTATGCCTGGGAACAGGGGTGCAGAAAAGACAACTTTG GGTGTATGCCTGGGAACAGTGGTGCAGAAAAGACAACTTTG < 41bp 0.687664581877438 0.90522717252385 NA NA prediction 0.435125181292823 Functional Gain - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113435404 chr12:113435403 nonsynonymous SNV 0.903 3 20 hm7G_associated_SNPs_26067 0 0 0 0 1 OAS2 chr12:113435325 3'AG 113435325 Downstream 79bp 23759 chr19 36365684 36365684 1 + G T LIHC 36365685 + 36365665 36365705 41 TGCGGCGCTACCTGCGTGCGGAGCAGAAGGAACAGAGGCAC TGCGGCGCTACCTGCGTGCTGAGCAGAAGGAACAGAGGCAC < 41bp 0.689427173762019 0.906982061586541 NA NA prediction 0.435109775649043 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36365685 chr19:36365684 synonymous SNV . 0 20 hm7G_associated_SNPs_26068 0 0 0 0 2 APLP1 chr19:36365643 3'AG 36365643 Downstream 42bp 23760 chr19 36365684 36365684 1 + G T LIHC 36365685 + 36365665 36365705 41 TGCGGCGCTACCTGCGTGCGGAGCAGAAGGAACAGAGGCAC TGCGGCGCTACCTGCGTGCTGAGCAGAAGGAACAGAGGCAC < 41bp 0.689427173762019 0.906982061586541 NA NA prediction 0.435109775649043 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36365685 chr19:36365684 synonymous SNV . 0 20 hm7G_associated_SNPs_26068 0 0 0 0 2 APLP1 chr19:36365771 5'GT 36365771 Upstream 88bp 23761 chr16 83994284 83994284 1 + G A rs115681737 83994285 + 83994265 83994305 41 TTGGGGGAAACATGAAGTCGGTCCTCACCTGGAAGCACCGG TTGGGGGAAACATGAAGTCAGTCCTCACCTGGAAGCACCGG < 41bp 0.522624462149197 0.740168766309398 NA NA prediction 0.435088608320402 Functional Gain - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83994285 chr16:83994284 synonymous SNV . 0 20 hm7G_associated_SNPs_26069 0 0 0 0 1 OSGIN1 chr16:83994365 5'GT 83994365 Upstream 82bp 23762 chr12 2929298 2929298 1 + G T STAD 2929299 + 2929279 2929319 41 TGGGCTACACAGACCGTGTGGTGCGAGCTTTCCGCTGGGAG TGGGCTACACAGACCGTGTTGTGCGAGCTTTCCGCTGGGAG < 41bp 0.365016427281362 0.717542300427423 NA NA prediction 0.435084600854845 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2929299 chr12:2929298 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26070 0 0 1 0 2 ITFG2 chr12:2929252 3'AG 2929252 Downstream 47bp 23763 chr12 2929298 2929298 1 + G T STAD 2929299 + 2929279 2929319 41 TGGGCTACACAGACCGTGTGGTGCGAGCTTTCCGCTGGGAG TGGGCTACACAGACCGTGTTGTGCGAGCTTTCCGCTGGGAG < 41bp 0.365016427281362 0.717542300427423 NA NA prediction 0.435084600854845 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2929299 chr12:2929298 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26070 0 0 1 0 2 ITFG2 chr12:2929391 5'GT 2929391 Upstream 94bp 23764 chr7 72755331 72755331 1 + G T UCEC 72755332 + 72755312 72755352 41 TTCTAGTTCGAGCCCAGAAGGAGCAACCCTTCAATCATGAC TTCTAGTTCGAGCCCAGAATGAGCAACCCTTCAATCATGAC < 41bp 0.384771864681552 0.717536285112181 NA NA prediction 0.435072570224361 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72755332 chr7:72755331 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_26071 0 0 0 2 1 FKBP6 chr7:72755272 3'AG 72755272 Downstream 60bp 23765 chr11 67075346 67075346 1 + C T SARC 67075347 + 67075327 67075367 41 CAGGAGCAGATGGAGCAGGCGATCCGTGCTGAGCTGTGGAA CAGGAGCAGATGGAGCAGGTGATCCGTGCTGAGCTGTGGAA < 41bp 0.51069751583178 0.728222242437635 NA NA prediction 0.435049453211711 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075347 chr11:67075346 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_26072 0 0 0 0 2 SSH3 chr11:67075317 3'AG 67075317 Downstream 30bp 23766 chr11 67075346 67075346 1 + C T SARC 67075347 + 67075327 67075367 41 CAGGAGCAGATGGAGCAGGCGATCCGTGCTGAGCTGTGGAA CAGGAGCAGATGGAGCAGGTGATCCGTGCTGAGCTGTGGAA < 41bp 0.51069751583178 0.728222242437635 NA NA prediction 0.435049453211711 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075347 chr11:67075346 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_26072 0 0 0 0 2 SSH3 chr11:67075410 5'GT 67075410 Upstream 65bp 23767 chr17 47655967 47655967 1 + G A LUSC 47655968 + 47655948 47655988 41 CCCTCCATAGGTCATCTGTGGCCAGGATGATGGTCCTCCCG CCCTCCATAGGTCATCTGTAGCCAGGATGATGGTCCTCCCG < 41bp 0.508754326465242 0.726272411921963 NA NA prediction 0.43503617091344 Functional Gain - NXPH3 ENSG00000182575 CDS Human protein_coding chr17:47655968 chr17:47655967 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_26074 0 0 0 0 1 NXPH3 chr17:47655958 3'AG 47655958 Downstream 10bp 23768 chr19 10398057 10398057 1 + G A BLCA 10398058 + 10398038 10398078 41 GCGCAGGAAAAACACGCTGGGCCACCTCCAGGATCACCGCC GCGCAGGAAAAACACGCTGAGCCACCTCCAGGATCACCGCC < 41bp 0.542346814405297 0.759840931767839 NA NA prediction 0.434988234725085 Functional Gain - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398058 chr19:10398057 stopgain 0.052 0 20 hm7G_associated_SNPs_26079 0 0 1 0 1 ICAM4 chr19:10398082 5'GT 10398082 Upstream 26bp 23769 chr4 83381150 83381150 1 + G T UCEC 83381151 + 83381131 83381171 41 CAGAGGCCAGTGCTGCTGAGGAAGCAGATGTGCACGTAGCT CAGAGGCCAGTGCTGCTGATGAAGCAGATGTGCACGTAGCT < 41bp 0.666852609263473 0.884342240919945 NA NA prediction 0.434979263312945 Functional Gain - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83381151 chr4:83381150 nonsynonymous SNV 0.774 1 20 hm7G_associated_SNPs_26080 0 0 1 0 1 ENOPH1 chr4:83381134 3'AG 83381134 Downstream 17bp 23770 chr9 140320777 140320777 1 + G A rs114490343 140320778 + 140320758 140320798 41 GAGTGGCCAACTTCCAGCTGGCAAGGTGAGTACAGGGGTGC GAGTGGCCAACTTCCAGCTAGCAAGGTGAGTACAGGGGTGC < 41bp 0.550070747730237 0.767558982460739 NA NA prediction 0.434976469461003 Functional Gain - NOXA1 ENSG00000188747 CDS Human protein_coding chr9:140320778 chr9:140320777 synonymous SNV . 0 20 hm7G_associated_SNPs_26081 0 0 0 0 2 NOXA1 chr9:140320700 3'AG 140320700 Downstream 78bp 23771 chr9 140320777 140320777 1 + G A rs114490343 140320778 + 140320758 140320798 41 GAGTGGCCAACTTCCAGCTGGCAAGGTGAGTACAGGGGTGC GAGTGGCCAACTTCCAGCTAGCAAGGTGAGTACAGGGGTGC < 41bp 0.550070747730237 0.767558982460739 NA NA prediction 0.434976469461003 Functional Gain - NOXA1 ENSG00000188747 CDS Human protein_coding chr9:140320778 chr9:140320777 synonymous SNV . 0 20 hm7G_associated_SNPs_26081 0 0 0 0 2 NOXA1 chr9:140320782 5'GT 140320782 Upstream 6bp 23772 chr3 12845062 12845062 1 + G A SKCM 12845063 + 12845043 12845083 41 ACGAGGACAGCGAGCGCAAGGTGGTGAAGATGCTGCTCCGG ACGAGGACAGCGAGCGCAAAGTGGTGAAGATGCTGCTCCGG < 41bp 0.505394716103211 0.72285770998647 NA NA prediction 0.434925987766517 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12845063 chr3:12845062 synonymous SNV . 0 20 hm7G_associated_SNPs_26086 0 0 1 0 2 CAND2 chr3:12844987 3'AG 12844987 Downstream 76bp 23773 chr3 12845062 12845062 1 + G A SKCM 12845063 + 12845043 12845083 41 ACGAGGACAGCGAGCGCAAGGTGGTGAAGATGCTGCTCCGG ACGAGGACAGCGAGCGCAAAGTGGTGAAGATGCTGCTCCGG < 41bp 0.505394716103211 0.72285770998647 NA NA prediction 0.434925987766517 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12845063 chr3:12845062 synonymous SNV . 0 20 hm7G_associated_SNPs_26086 0 0 1 0 2 CAND2 chr3:12845130 5'GT 12845130 Upstream 69bp 23774 chr16 67943563 67943563 1 + G A UCEC 67943564 + 67943544 67943584 41 GAGGATGACAACCGTACCCGGCTGTACCGGCAGATCCTCAG GAGGATGACAACCGTACCCAGCTGTACCGGCAGATCCTCAG < 41bp 0.502755722285312 0.720216500822958 NA NA prediction 0.434921557075292 Functional Gain - PSKH1 ENSG00000159792 CDS Human protein_coding chr16:67943564 chr16:67943563 nonsynonymous SNV 0.886 1 20 hm7G_associated_SNPs_26087 0 0 0 0 1 PSKH1 chr16:67943609 5'GT 67943609 Upstream 47bp 23775 chr10 88917821 88917821 1 + G T COAD 88917822 + 88917802 88917842 41 TAGATGTTGTTATTCATGAGGACCAATGGATTGGCGAGACA TAGATGTTGTTATTCATGATGACCAATGGATTGGCGAGACA < 41bp 0.672072531770076 0.889527593721802 NA NA prediction 0.434910123903452 Functional Gain - FAM35A ENSG00000122376 CDS Human protein_coding chr10:88917822 chr10:88917821 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_26089 0 0 1 0 1 FAM35A chr10:88917912 5'GT 88917912 Upstream 92bp 23776 chr17 56277739 56277739 1 + G A STAD 56277740 + 56277720 56277760 41 CTCAACATGCAACGAAGCCGGGACCACGGCCTTCCAGGTGA CTCAACATGCAACGAAGCCAGGACCACGGCCTTCCAGGTGA < 41bp 0.52415345799345 0.741590428108517 NA NA prediction 0.434873940230134 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56277740 chr17:56277739 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_26092 0 0 0 0 1 EPX chr17:56277756 5'GT 56277756 Upstream 18bp 23777 chr21 47971581 47971581 1 + G T LUSC 47971582 + 47971562 47971602 41 CAATGATCGTGGGGAACCTGGTTGCTGGGAAGAGAATCGCT CAATGATCGTGGGGAACCTTGTTGCTGGGAAGAGAATCGCT < 41bp 0.37399100493683 0.717436398629566 NA NA prediction 0.434872797259132 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47971582 chr21:47971581 synonymous SNV . 0 20 hm7G_associated_SNPs_26093 0 0 1 0 2 DIP2A chr21:47971547 3'AG 47971547 Downstream 35bp 23778 chr21 47971581 47971581 1 + G T LUSC 47971582 + 47971562 47971602 41 CAATGATCGTGGGGAACCTGGTTGCTGGGAAGAGAATCGCT CAATGATCGTGGGGAACCTTGTTGCTGGGAAGAGAATCGCT < 41bp 0.37399100493683 0.717436398629566 NA NA prediction 0.434872797259132 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47971582 chr21:47971581 synonymous SNV . 0 20 hm7G_associated_SNPs_26093 0 0 1 0 2 DIP2A chr21:47971656 5'GT 47971656 Upstream 76bp 23779 chr19 45377196 45377196 1 + G A UCEC 45377197 + 45377177 45377217 41 TCCTGAAGTGTCCATCTCCGGCTATGATGACAACTGGTACC TCCTGAAGTGTCCATCTCCAGCTATGATGACAACTGGTACC < 41bp 0.50929657085589 0.726727831290034 NA NA prediction 0.434862520868288 Functional Gain - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45377197 chr19:45377196 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_26095 0 0 0 0 2 NECTIN2 chr19:45377173 3'AG 45377173 Downstream 24bp 23780 chr19 45377196 45377196 1 + G A UCEC 45377197 + 45377177 45377217 41 TCCTGAAGTGTCCATCTCCGGCTATGATGACAACTGGTACC TCCTGAAGTGTCCATCTCCAGCTATGATGACAACTGGTACC < 41bp 0.50929657085589 0.726727831290034 NA NA prediction 0.434862520868288 Functional Gain - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45377197 chr19:45377196 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_26095 0 0 0 0 2 NECTIN2 chr19:45377290 5'GT 45377290 Upstream 95bp 23781 chr10 74684331 74684331 1 + G T CESC 74684332 + 74684312 74684352 41 TGAGCGGCTTGGAAAGCTTGGTGGAGAGCTGCTTTGCCACC TGAGCGGCTTGGAAAGCTTTGTGGAGAGCTGCTTTGCCACC < 41bp 0.393390449756837 0.717429712690212 NA NA prediction 0.434859425380423 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74684332 chr10:74684331 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_26096 0 0 0 0 1 OIT3 chr10:74684402 5'GT 74684402 Upstream 72bp 23782 chr16 23387159 23387159 1 + G A GBM 23387160 + 23387140 23387180 41 GAGAAATACTGCAACAACCGGGACTTCCCAGACTGGGGTGA GAGAAATACTGCAACAACCAGGACTTCCCAGACTGGGGTGA < 41bp 0.526417077673192 0.743843127685418 NA NA prediction 0.434852100024452 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23387160 chr16:23387159 nonsynonymous SNV 0.359 0 20 hm7G_associated_SNPs_26097 0 0 0 0 1 SCNN1B chr16:23387176 5'GT 23387176 Upstream 18bp 23783 chr5 5242178 5242178 1 + G T LUSC 5242179 + 5242159 5242199 41 TTTGTAGCTGCTGTTTCAGGGAAGGAACCCGGGTGTTGCCT TTTGTAGCTGCTGTTTCAGTGAAGGAACCCGGGTGTTGCCT < 41bp 0.375291147030191 0.717421971941102 NA NA prediction 0.434843943882204 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5242179 chr5:5242178 stopgain 0.988 1 20 hm7G_associated_SNPs_26099 0 0 0 0 1 ADAMTS16 chr5:5242166 3'AG 5242166 Downstream 13bp 23784 chr16 66976054 66976054 1 + G A STAD 66976055 + 66976035 66976075 41 CTGAGGGAGGAGTACATTGGGGACAATGGGGATCCCCAGAC CTGAGGGAGGAGTACATTGAGGACAATGGGGATCCCCAGAC < 41bp 0.509763050057351 0.727184103596657 NA NA prediction 0.434842107078611 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66976055 chr16:66976054 nonsynonymous SNV 0.010 1 20 hm7G_associated_SNPs_26100 0 0 1 0 1 CES2 chr16:66976008 3'AG 66976008 Downstream 47bp 23785 chr7 74114641 74114641 1 + G T BLCA 74114642 + 74114622 74114662 41 AGATGCTGCGAGACCAGTCGGCTGTGGTAGTGCAGGGGCTT AGATGCTGCGAGACCAGTCTGCTGTGGTAGTGCAGGGGCTT < 41bp 0.688332038257947 0.905746498060124 NA NA prediction 0.434828919604354 Functional Gain - GTF2I ENSG00000077809 CDS Human other chr7:74114642 chr7:74114641 synonymous SNV . 0 20 hm7G_associated_SNPs_26101 0 0 1 0 1 GTF2I chr7:74114577 3'AG 74114577 Downstream 65bp 23786 chr22 24919594 24919594 1 + G T READ 24919595 + 24919575 24919615 41 GTTCCTTTAAAGCTCACCAGGACTTTGGCTACTTTTATGGC GTTCCTTTAAAGCTCACCATGACTTTGGCTACTTTTATGGC < 41bp 0.378428224176813 0.717411680234617 NA NA prediction 0.434823360469233 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919595 chr22:24919594 nonsynonymous SNV 0.565 1 20 hm7G_associated_SNPs_26104 0 0 0 0 1 UPB1 chr22:24919587 3'AG 24919587 Downstream 8bp 23787 chr17 42855203 42855203 1 + G A LUAD 42855204 + 42855184 42855224 41 AGCACCTGCCCCGGCAGTGGGGAGCGCCGGATTTGCTCCCA AGCACCTGCCCCGGCAGTGAGGAGCGCCGGATTTGCTCCCA < 41bp 0.521055300672849 0.738465815130943 NA NA prediction 0.434821028916186 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855204 chr17:42855203 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_26105 0 0 0 0 1 ADAM11 chr17:42855231 5'GT 42855231 Upstream 29bp 23788 chr11 20429516 20429516 1 + G T LUAD 20429517 + 20429497 20429537 41 TGTTTGCTGCTAAAGCTGGGGCGAAGAAGGTTCTTGGAGTT TGTTTGCTGCTAAAGCTGGTGCGAAGAAGGTTCTTGGAGTT < 41bp 0.679043969718194 0.896448860027048 NA NA prediction 0.434809780617707 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20429517 chr11:20429516 synonymous SNV . 0 20 hm7G_associated_SNPs_26109 0 0 1 0 2 PRMT3 chr11:20429457 3'AG 20429457 Downstream 60bp 23789 chr11 20429516 20429516 1 + G T LUAD 20429517 + 20429497 20429537 41 TGTTTGCTGCTAAAGCTGGGGCGAAGAAGGTTCTTGGAGTT TGTTTGCTGCTAAAGCTGGTGCGAAGAAGGTTCTTGGAGTT < 41bp 0.679043969718194 0.896448860027048 NA NA prediction 0.434809780617707 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20429517 chr11:20429516 synonymous SNV . 0 20 hm7G_associated_SNPs_26109 0 0 1 0 2 PRMT3 chr11:20429578 5'GT 20429578 Upstream 63bp 23790 chr1 16069569 16069569 1 + G A LUSC 16069570 + 16069550 16069590 41 GGGCCCAGTGGGCCTCCCTGGAAACGGTGCACCTGGCAGGG GGGCCCAGTGGGCCTCCCTAGAAACGGTGCACCTGGCAGGG < 41bp 0.486522328603734 0.717401414808789 NA NA prediction 0.434802829617577 Functional Gain - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16069570 chr1:16069569 synonymous SNV . 0 20 hm7G_associated_SNPs_26111 0 0 0 0 1 TMEM82 chr1:16069515 3'AG 16069515 Downstream 55bp 23791 chr17 43310620 43310620 1 + G A CESC 43310621 + 43310601 43310641 41 GAGTTCAGGAGTCCACGCAGGTGCTACGGGAGCTGGAGACC GAGTTCAGGAGTCCACGCAAGTGCTACGGGAGCTGGAGACC < 41bp 0.519535038193074 0.73693137685558 NA NA prediction 0.434792677325011 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43310621 chr17:43310620 synonymous SNV . 0 20 hm7G_associated_SNPs_26112 0 0 0 0 2 FMNL1 chr17:43310591 3'AG 43310591 Downstream 30bp 23792 chr17 43310620 43310620 1 + G A CESC 43310621 + 43310601 43310641 41 GAGTTCAGGAGTCCACGCAGGTGCTACGGGAGCTGGAGACC GAGTTCAGGAGTCCACGCAAGTGCTACGGGAGCTGGAGACC < 41bp 0.519535038193074 0.73693137685558 NA NA prediction 0.434792677325011 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43310621 chr17:43310620 synonymous SNV . 0 20 hm7G_associated_SNPs_26112 0 0 0 0 2 FMNL1 chr17:43310664 5'GT 43310664 Upstream 45bp 23793 chr9 90219963 90219963 1 + C T COAD 90219964 + 90219944 90219984 41 AAGGAGGACTAAGTCCAGCCGGCGGGGTGTGAGCCGCGAGG AAGGAGGACTAAGTCCAGCTGGCGGGGTGTGAGCCGCGAGG < 41bp 0.503366948100532 0.720759373267611 NA NA prediction 0.434784850334158 Functional Gain - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90219964 chr9:90219963 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26113 0 0 1 0 1 DAPK1 chr9:90219869 3'AG 90219869 Downstream 95bp 23794 chr16 50335060 50335060 1 + G A UCEC 50335061 + 50335041 50335081 41 CGAGGTGGAGGATGGGCACGGGCAGCAGCGGGACCCCTACC CGAGGTGGAGGATGGGCACAGGCAGCAGCGGGACCCCTACC < 41bp 0.527183578177158 0.744568195823418 NA NA prediction 0.434769235292519 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50335061 chr16:50335060 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26115 0 0 1 0 2 ADCY7 chr16:50334993 3'AG 50334993 Downstream 68bp 23795 chr16 50335060 50335060 1 + G A UCEC 50335061 + 50335041 50335081 41 CGAGGTGGAGGATGGGCACGGGCAGCAGCGGGACCCCTACC CGAGGTGGAGGATGGGCACAGGCAGCAGCGGGACCCCTACC < 41bp 0.527183578177158 0.744568195823418 NA NA prediction 0.434769235292519 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50335061 chr16:50335060 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26115 0 0 1 0 2 ADCY7 chr16:50335125 5'GT 50335125 Upstream 66bp 23796 chr1 29586040 29586040 1 + G A UCEC 29586041 + 29586021 29586061 41 CGTTCCAGTGCATGGCCGCGGGCAGAGCGGCCGAGGCCGAA CGTTCCAGTGCATGGCCGCAGGCAGAGCGGCCGAGGCCGAA < 41bp 0.514157770224236 0.731537815886618 NA NA prediction 0.434760091324765 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29586041 chr1:29586040 synonymous SNV . 0 20 hm7G_associated_SNPs_26116 0 0 1 0 2 PTPRU chr1:29585961 3'AG 29585961 Downstream 80bp 23797 chr1 29586040 29586040 1 + G A UCEC 29586041 + 29586021 29586061 41 CGTTCCAGTGCATGGCCGCGGGCAGAGCGGCCGAGGCCGAA CGTTCCAGTGCATGGCCGCAGGCAGAGCGGCCGAGGCCGAA < 41bp 0.514157770224236 0.731537815886618 NA NA prediction 0.434760091324765 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29586041 chr1:29586040 synonymous SNV . 0 20 hm7G_associated_SNPs_26116 0 0 1 0 2 PTPRU chr1:29586076 5'GT 29586076 Upstream 37bp 23798 chr14 75936060 75936060 1 + G T LUAD 75936061 + 75936041 75936081 41 GAGGAGCTGAAGCAGGAGCGGCAGCAGCTCATCCTGATGCT GAGGAGCTGAAGCAGGAGCTGCAGCAGCTCATCCTGATGCT < 41bp 0.674435404662399 0.891813760880287 NA NA prediction 0.434756712435776 Functional Gain - JDP2 ENSG00000140044 CDS Human protein_coding chr14:75936061 chr14:75936060 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26117 0 0 0 0 1 JDP2 chr14:75935993 3'AG 75935993 Downstream 68bp 23799 chr11 63961732 63961732 1 + G T UCEC 63961733 + 63961713 63961753 41 CCAAGCGAACCTATGAGGAGGGCTTAAAACACGAGGCAAAT CCAAGCGAACCTATGAGGATGGCTTAAAACACGAGGCAAAT < 41bp 0.688683877134386 0.906040435121173 NA NA prediction 0.434713115973575 Functional Gain - STIP1;STIP1 ENSG00000168439;ENSG00000168439 exonic;splicing Human protein_coding chr11:63961733 chr11:63961732 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_26121 0 0 1 0 2 STIP1 chr11:63961661 3'AG 63961661 Downstream 72bp 23800 chr11 63961732 63961732 1 + G T UCEC 63961733 + 63961713 63961753 41 CCAAGCGAACCTATGAGGAGGGCTTAAAACACGAGGCAAAT CCAAGCGAACCTATGAGGATGGCTTAAAACACGAGGCAAAT < 41bp 0.688683877134386 0.906040435121173 NA NA prediction 0.434713115973575 Functional Gain - STIP1;STIP1 ENSG00000168439;ENSG00000168439 exonic;splicing Human protein_coding chr11:63961733 chr11:63961732 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_26121 0 0 1 0 2 STIP1 chr11:63961802 5'GT 63961802 Upstream 71bp 23801 chr9 133978340 133978340 1 + G A rs185049908 133978341 + 133978321 133978361 41 ACAGAAAGACAAGCCTGGAGGGCCAGGAGCAAGGGTTCGCC ACAGAAAGACAAGCCTGGAAGGCCAGGAGCAAGGGTTCGCC < 41bp 0.516772813669898 0.734126333710264 NA NA prediction 0.434707040080732 Functional Gain - AIF1L ENSG00000126878 CDS Human protein_coding chr9:133978341 chr9:133978340 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26122 0 0 0 0 1 AIF1L chr9:133978375 5'GT 133978375 Upstream 36bp 23802 chr11 67173401 67173401 1 + G A SKCM 67173402 + 67173382 67173422 41 GGCTCCTGCAGGTGCTCAAGGCCTACACCCTGTATCGACCG GGCTCCTGCAGGTGCTCAAAGCCTACACCCTGTATCGACCG < 41bp 0.53719677313879 0.754544193748308 NA NA prediction 0.434694841219037 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67173402 chr11:67173401 nonsynonymous SNV 0.955 0 20 hm7G_associated_SNPs_26123 0 0 0 0 3 TBC1D10C chr11:67173374 3'AG 67173374 Downstream 28bp 23803 chr11 67173401 67173401 1 + G A SKCM 67173402 + 67173382 67173422 41 GGCTCCTGCAGGTGCTCAAGGCCTACACCCTGTATCGACCG GGCTCCTGCAGGTGCTCAAAGCCTACACCCTGTATCGACCG < 41bp 0.53719677313879 0.754544193748308 NA NA prediction 0.434694841219037 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67173402 chr11:67173401 nonsynonymous SNV 0.955 0 20 hm7G_associated_SNPs_26123 0 0 0 0 3 TBC1D10C chr11:67173378 3'AG 67173378 Downstream 24bp 23804 chr11 67173401 67173401 1 + G A SKCM 67173402 + 67173382 67173422 41 GGCTCCTGCAGGTGCTCAAGGCCTACACCCTGTATCGACCG GGCTCCTGCAGGTGCTCAAAGCCTACACCCTGTATCGACCG < 41bp 0.53719677313879 0.754544193748308 NA NA prediction 0.434694841219037 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67173402 chr11:67173401 nonsynonymous SNV 0.955 0 20 hm7G_associated_SNPs_26123 0 0 0 0 3 TBC1D10C chr11:67173488 5'GT 67173488 Upstream 88bp 23805 chr17 73566135 73566135 1 + G T LUAD 73566136 + 73566116 73566156 41 GACCAAGAGGGCTACCGCTGGAAGGGGCACGAGCGCCTGGC GACCAAGAGGGCTACCGCTTGAAGGGGCACGAGCGCCTGGC < 41bp 0.690335753752408 0.907679492907871 NA NA prediction 0.434687478310925 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73566136 chr17:73566135 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26124 0 0 1 0 1 LLGL2 chr17:73566044 3'AG 73566044 Downstream 92bp 23806 chr13 113508679 113508679 1 + C T STAD 113508680 + 113508660 113508700 41 ACGGGAGACAAGATGGAGACGGCCGCGGCCACGTGCTACGC ACGGGAGACAAGATGGAGATGGCCGCGGCCACGTGCTACGC < 41bp 0.502666042962908 0.720004648169978 NA NA prediction 0.434677210414141 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113508680 chr13:113508679 nonsynonymous SNV 0.970 5 20 hm7G_associated_SNPs_26125 0 0 1 0 1 ATP11A chr13:113508593 3'AG 113508593 Downstream 87bp 23807 chr9 135863612 135863612 1 + G A LUSC 135863613 + 135863593 135863633 41 TTGTGCTGTCCCGACCCCAGGATGGGGACTCTCCACTGTCC TTGTGCTGTCCCGACCCCAAGATGGGGACTCTCCACTGTCC < 41bp 0.505385657420287 0.72272119785102 NA NA prediction 0.434671080861466 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135863613 chr9:135863612 synonymous SNV . 0 20 hm7G_associated_SNPs_26127 0 0 0 0 1 GFI1B chr9:135863584 3'AG 135863584 Downstream 29bp 23808 chr9 91972473 91972473 1 + G T LUSC 91972474 + 91972454 91972494 41 GGGATCTTCAGCTATGATGGGGCCCAGGTGAGTGCACAGGG GGGATCTTCAGCTATGATGTGGCCCAGGTGAGTGCACAGGG < 41bp 0.679604416697802 0.896939213750906 NA NA prediction 0.434669594106208 Functional Gain - SECISBP2 ENSG00000187742 CDS Human protein_coding chr9:91972474 chr9:91972473 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26128 0 0 1 0 1 SECISBP2 chr9:91972480 5'GT 91972480 Upstream 8bp 23809 chr20 61957029 61957029 1 + G A COAD 61957030 + 61957010 61957050 41 TCTCTCCCAGGGCCACCCCGGCCACCAGGGCATCCCCGGGA TCTCTCCCAGGGCCACCCCAGCCACCAGGGCATCCCCGGGA < 41bp 0.529137425771151 0.746470585093427 NA NA prediction 0.434666318644552 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61957030 chr20:61957029 nonsynonymous SNV 0.114 4 20 hm7G_associated_SNPs_26129 0 0 0 0 2 COL20A1 chr20:61957020 3'AG 61957020 Downstream 10bp 23810 chr20 61957029 61957029 1 + G A COAD 61957030 + 61957010 61957050 41 TCTCTCCCAGGGCCACCCCGGCCACCAGGGCATCCCCGGGA TCTCTCCCAGGGCCACCCCAGCCACCAGGGCATCCCCGGGA < 41bp 0.529137425771151 0.746470585093427 NA NA prediction 0.434666318644552 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61957030 chr20:61957029 nonsynonymous SNV 0.114 4 20 hm7G_associated_SNPs_26129 0 0 0 0 2 COL20A1 chr20:61957073 5'GT 61957073 Upstream 45bp 23811 chr14 59105180 59105180 1 + G T rs199649683 59105181 + 59105161 59105201 41 GCCGCTGCGCCCCGCGCTGGGGAGCTACTGGGGGAGGCGGC GCCGCTGCGCCCCGCGCTGTGGAGCTACTGGGGGAGGCGGC < 41bp 0.680122230822469 0.89744395549676 NA NA prediction 0.434643449348582 Functional Gain - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59105181 chr14:59105180 nonsynonymous SNV 0.576 3 20 hm7G_associated_SNPs_26131 0 0 0 0 1 DACT1 chr14:59105265 5'GT 59105265 Upstream 86bp 23812 chr5 176522568 176522568 1 + G A SKCM 176522569 + 176522549 176522589 41 TCGTGGAGTGCGCCGCCAAGGGAAACCTGCGGGAGTTCCTG TCGTGGAGTGCGCCGCCAAAGGAAACCTGCGGGAGTTCCTG < 41bp 0.486728783947851 0.717316412207982 NA NA prediction 0.434632824415963 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176522569 chr5:176522568 synonymous SNV . 0 20 hm7G_associated_SNPs_26133 0 0 1 0 1 FGFR4 chr5:176522534 3'AG 176522534 Downstream 35bp 23813 chr21 22906885 22906885 1 + G T COAD 22906886 + 22906866 22906906 41 GATCAAAAGAACCAATAGTGGAGATGAGAACAGAGGATGAA GATCAAAAGAACCAATAGTTGAGATGAGAACAGAGGATGAA < 41bp 0.421109401063775 0.717306549613483 NA NA prediction 0.434613099226967 Functional Gain - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22906886 chr21:22906885 synonymous SNV . 0 20 hm7G_associated_SNPs_26134 0 0 0 0 2 NCAM2 chr21:22906858 3'AG 22906858 Downstream 28bp 23814 chr21 22906885 22906885 1 + G T COAD 22906886 + 22906866 22906906 41 GATCAAAAGAACCAATAGTGGAGATGAGAACAGAGGATGAA GATCAAAAGAACCAATAGTTGAGATGAGAACAGAGGATGAA < 41bp 0.421109401063775 0.717306549613483 NA NA prediction 0.434613099226967 Functional Gain - NCAM2 ENSG00000154654 CDS Human protein_coding chr21:22906886 chr21:22906885 synonymous SNV . 0 20 hm7G_associated_SNPs_26134 0 0 0 0 2 NCAM2 chr21:22906977 5'GT 22906977 Upstream 93bp 23815 chr16 67919656 67919656 1 + G A rs115666575 67919657 + 67919637 67919677 41 CCCTGGCAGCAGCTGCAGCGGGCCCAAACCGATGTGACACC CCCTGGCAGCAGCTGCAGCAGGCCCAAACCGATGTGACACC < 41bp 0.546005394391423 0.763311463997856 NA NA prediction 0.434612139212867 Functional Gain - NRN1L ENSG00000188038 CDS Human protein_coding chr16:67919657 chr16:67919656 synonymous SNV . 0 20 hm7G_associated_SNPs_26135 0 0 1 0 1 NRN1L chr16:67919625 3'AG 67919625 Downstream 32bp 23816 chr11 125237747 125237747 1 + G A rs373748561 125237748 + 125237728 125237768 41 TCTTCTCTCTGCAGATGACGGCAACCGCCCAGCCACCCTCC TCTTCTCTCTGCAGATGACAGCAACCGCCCAGCCACCCTCC < 41bp 0.504690576517648 0.72196038517652 NA NA prediction 0.434539617317744 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125237748 chr11:125237747 synonymous SNV . 0 20 hm7G_associated_SNPs_26137 0 0 0 0 1 PKNOX2 chr11:125237742 3'AG 125237742 Downstream 6bp 23817 chr20 2968733 2968733 1 + G T LUSC 2968734 + 2968714 2968754 41 TTCTTTCCGCTTATCCAACGGCCGCACTGAGGATGTGGGTA TTCTTTCCGCTTATCCAACTGCCGCACTGAGGATGTGGGTA < 41bp 0.541787288253526 0.759045039976841 NA NA prediction 0.43451550344663 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:2968734 chr20:2968733 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_26138 0 0 1 2 1 PTPRA chr20:2968678 3'AG 2968678 Downstream 56bp 23818 chr16 31384699 31384699 1 + G A UCEC 31384700 + 31384680 31384720 41 GACTGTCCTACCGCTACGTGGCAGAGGGCCAGGTGCACCCT GACTGTCCTACCGCTACGTAGCAGAGGGCCAGGTGCACCCT < 41bp 0.536418177680902 0.753674718636227 NA NA prediction 0.43451308191065 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31384700 chr16:31384699 synonymous SNV . 0 20 hm7G_associated_SNPs_26139 0 0 0 0 1 ITGAX chr16:31384711 5'GT 31384711 Upstream 13bp 23819 chr19 38795267 38795267 1 + G A SKCM 38795268 + 38795248 38795288 41 CCGCACCTCCATCCAGCAAGGACACCACAGCTCTTCCGACT CCGCACCTCCATCCAGCAAAGACACCACAGCTCTTCCGACT < 41bp 0.513417889963076 0.730667071217845 NA NA prediction 0.434498362509539 Functional Gain - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795268 chr19:38795267 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_26142 0 0 0 0 3 C19orf33 chr19:38795205 3'AG 38795205 Downstream 63bp 23820 chr19 38795267 38795267 1 + G A SKCM 38795268 + 38795248 38795288 41 CCGCACCTCCATCCAGCAAGGACACCACAGCTCTTCCGACT CCGCACCTCCATCCAGCAAAGACACCACAGCTCTTCCGACT < 41bp 0.513417889963076 0.730667071217845 NA NA prediction 0.434498362509539 Functional Gain - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795268 chr19:38795267 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_26142 0 0 0 0 3 C19orf33 chr19:38795264 3'AG 38795264 Downstream 4bp 23821 chr19 38795267 38795267 1 + G A SKCM 38795268 + 38795248 38795288 41 CCGCACCTCCATCCAGCAAGGACACCACAGCTCTTCCGACT CCGCACCTCCATCCAGCAAAGACACCACAGCTCTTCCGACT < 41bp 0.513417889963076 0.730667071217845 NA NA prediction 0.434498362509539 Functional Gain - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795268 chr19:38795267 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_26142 0 0 0 0 3 C19orf33 chr19:38795326 5'GT 38795326 Upstream 60bp 23822 chr19 4283066 4283066 1 + G A SKCM 4283067 + 4283047 4283087 41 CTAGAACTTCCCGGCAGAGGGGTGCAGCTCTATGACACCCC CTAGAACTTCCCGGCAGAGAGGTGCAGCTCTATGACACCCC < 41bp 0.495720000894862 0.717243825428958 NA NA prediction 0.434487650857915 Functional Gain - SHD ENSG00000105251 CDS Human protein_coding chr19:4283067 chr19:4283066 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_26143 0 0 0 0 1 SHD chr19:4283051 3'AG 4283051 Downstream 16bp 23823 chr2 220356520 220356520 1 + G T rs12473286 220356521 + 220356501 220356541 41 TCTGTCTCCTGTCAGCTCCGGAGATGGTGAAGGGAGAACCC TCTGTCTCCTGTCAGCTCCTGAGATGGTGAAGGGAGAACCC < 41bp 0.386623029867575 0.717232222288454 NA NA prediction 0.434464444576908 Functional Gain - SPEG ENSG00000072195 CDS Human protein_coding chr2:220356521 chr2:220356520 synonymous SNV . 0 20 hm7G_associated_SNPs_26146 0 0 0 0 2 SPEG chr2:220356516 3'AG 220356516 Downstream 5bp 23824 chr2 220356520 220356520 1 + G T rs12473286 220356521 + 220356501 220356541 41 TCTGTCTCCTGTCAGCTCCGGAGATGGTGAAGGGAGAACCC TCTGTCTCCTGTCAGCTCCTGAGATGGTGAAGGGAGAACCC < 41bp 0.386623029867575 0.717232222288454 NA NA prediction 0.434464444576908 Functional Gain - SPEG ENSG00000072195 CDS Human protein_coding chr2:220356521 chr2:220356520 synonymous SNV . 0 20 hm7G_associated_SNPs_26146 0 0 0 0 2 SPEG chr2:220356591 5'GT 220356591 Upstream 72bp 23825 chr7 101960915 101960915 1 + G A SKCM 101960916 + 101960896 101960936 41 CATCCCACTGGAGTCAGGGGGCTCGGCCGACATCACCCTTC CATCCCACTGGAGTCAGGGAGCTCGGCCGACATCACCCTTC < 41bp 0.530505379098681 0.747735013150598 NA NA prediction 0.434459268103836 Functional Gain - SH2B2 ENSG00000160999 CDS Human protein_coding chr7:101960916 chr7:101960915 nonsynonymous SNV 0.846 3 20 hm7G_associated_SNPs_26148 0 0 0 0 1 SH2B2 chr7:101960969 5'GT 101960969 Upstream 55bp 23826 chr8 74235196 74235196 1 + G T COAD 74235197 + 74235177 74235217 41 TGTATCGGTTCCTAGGAGCGGACAAGTGTATGTACCCCTTT TGTATCGGTTCCTAGGAGCTGACAAGTGTATGTACCCCTTT < 41bp 0.662673555476228 0.879901564947055 NA NA prediction 0.434456018941654 Functional Gain - RDH10 ENSG00000121039 CDS Human protein_coding chr8:74235197 chr8:74235196 synonymous SNV . 0 20 hm7G_associated_SNPs_26149 0 0 1 0 1 RDH10 chr8:74235148 3'AG 74235148 Downstream 49bp 23827 chr17 32956162 32956162 1 + G A COAD 32956163 + 32956143 32956183 41 GCCCTGCCTGACCTGGAGCGGGCAGTCACTGAGCTGACGGT GCCCTGCCTGACCTGGAGCAGGCAGTCACTGAGCTGACGGT < 41bp 0.499920391992386 0.71722790333876 NA NA prediction 0.434455806677519 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32956163 chr17:32956162 nonsynonymous SNV 0.957 1 20 hm7G_associated_SNPs_26150 0 0 0 0 1 TMEM132E chr17:32956223 5'GT 32956223 Upstream 62bp 23828 chr2 220146676 220146676 1 + G A UCEC 220146677 + 220146657 220146697 41 CCAGGAACTGGCCCATCTCGGGCAGAAGCTGGCAGTGGTGG CCAGGAACTGGCCCATCTCAGGCAGAAGCTGGCAGTGGTGG < 41bp 0.483303941710228 0.717220782007365 NA NA prediction 0.434441564014731 Functional Gain - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220146677 chr2:220146676 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_26151 0 0 1 0 1 DNAJB2 chr2:220146661 3'AG 220146661 Downstream 16bp 23829 chr20 32664875 32664875 1 + G A LUSC 32664876 + 32664856 32664896 41 AGGTGGCGCCGGCGGCGGCGGCGGTGGTGGTGGCAGCGGTG AGGTGGCGCCGGCGGCGGCAGCGGTGGTGGTGGCAGCGGTG < 41bp 0.532498901946529 0.749716264587451 NA NA prediction 0.434434725281843 Functional Gain - RALY ENSG00000125970 CDS Human protein_coding chr20:32664876 chr20:32664875 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_26153 0 0 1 0 1 RALY chr20:32664834 3'AG 32664834 Downstream 42bp 23830 chr3 46939630 46939630 1 + G A SKCM 46939631 + 46939611 46939651 41 CCTGGGCACAACAGGACGTGGGCCAACTACAGCGAGTGTGT CCTGGGCACAACAGGACGTAGGCCAACTACAGCGAGTGTGT < 41bp 0.54269827765014 0.759910796873522 NA NA prediction 0.434425038446764 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939631 chr3:46939630 stopgain 0.973 0 20 hm7G_associated_SNPs_26155 0 0 0 0 2 PTH1R chr3:46939564 3'AG 46939564 Downstream 67bp 23831 chr3 46939630 46939630 1 + G A SKCM 46939631 + 46939611 46939651 41 CCTGGGCACAACAGGACGTGGGCCAACTACAGCGAGTGTGT CCTGGGCACAACAGGACGTAGGCCAACTACAGCGAGTGTGT < 41bp 0.54269827765014 0.759910796873522 NA NA prediction 0.434425038446764 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939631 chr3:46939630 stopgain 0.973 0 20 hm7G_associated_SNPs_26155 0 0 0 0 2 PTH1R chr3:46939682 5'GT 46939682 Upstream 53bp 23832 chr10 292866 292866 1 + G T UCEC 292867 + 292847 292887 41 ATCTAAGAATGAGGACCGAGGTGAGGAAGAGGCAGAATCCA ATCTAAGAATGAGGACCGATGTGAGGAAGAGGCAGAATCCA < 41bp 0.671796940497113 0.889004651701291 NA NA prediction 0.434415422408356 Functional Gain - ZMYND11 ENSG00000015171 CDS Human protein_coding chr10:292867 chr10:292866 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26156 0 0 1 0 1 ZMYND11 chr10:292913 5'GT 292913 Upstream 48bp 23833 chr1 46034263 46034263 1 + G T rs79274447 46034264 + 46034244 46034284 41 GGCTCCTCTGATCGTGCATGGCGTGATCCTGATGAGCCTGT GGCTCCTCTGATCGTGCATTGCGTGATCCTGATGAGCCTGT < 41bp 0.370066065412109 0.717200025398316 NA NA prediction 0.434400050796632 Functional Gain - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46034264 chr1:46034263 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_26157 0 0 1 0 1 AKR1A1 chr1:46034356 5'GT 46034356 Upstream 94bp 23834 chr10 45938501 45938501 1 + G A LUSC 45938502 + 45938482 45938522 41 CCAGGCCAACGCCACAGGGGGCGGTGGGCACGTGCAGATGG CCAGGCCAACGCCACAGGGAGCGGTGGGCACGTGCAGATGG < 41bp 0.521812173036442 0.738967009794539 NA NA prediction 0.434309673516193 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938502 chr10:45938501 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_26160 0 0 0 0 1 ALOX5 chr10:45938486 3'AG 45938486 Downstream 16bp 23835 chr20 35201896 35201896 1 + G A rs545784011 35201897 + 35201877 35201917 41 CGACGGCCCGCCCCGCGGGGGGTGGGCGCAGCTCGTCGCGC CGACGGCCCGCCCCGCGGGAGGTGGGCGCAGCTCGTCGCGC < 41bp 0.530746824598727 0.747894614691068 NA NA prediction 0.434295580184683 Functional Gain - TGIF2 ENSG00000259716 ncRNA_intronic Human other chr20:35201897 chr20:35201896 . . 0 20 hm7G_associated_SNPs_26161 0 0 0 0 1 TGIF2 chr20:35201927 5'GT 35201927 Upstream 32bp 23836 chr19 13910670 13910670 1 + G A UCEC 13910671 + 13910651 13910691 41 GAGGGCGAGCACGATGCCCGGGTGCCCTTTACCCGCGGGCT GAGGGCGAGCACGATGCCCAGGTGCCCTTTACCCGCGGGCT < 41bp 0.559401911415824 0.776548183373001 NA NA prediction 0.434292543914355 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13910671 chr19:13910670 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_26162 0 0 0 0 1 ZSWIM4 chr19:13910735 5'GT 13910735 Upstream 66bp 23837 chr6 130454753 130454753 1 + G T LUAD 130454754 + 130454734 130454774 41 GCCAGTAAAGTTTCCAAATGGAGCACAGACGAGGTATATTT GCCAGTAAAGTTTCCAAATTGAGCACAGACGAGGTATATTT < 41bp 0.392001625909956 0.717143340710976 NA NA prediction 0.434286681421951 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130454754 chr6:130454753 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_26163 0 0 0 0 1 L3MBTL3 chr6:130454766 5'GT 130454766 Upstream 14bp 23838 chr1 43777369 43777369 1 + G A STAD 43777370 + 43777350 43777390 41 GTGCCCCTGGCTGCACCTCGGCTCCTGACCAAGCAGAGCCG GTGCCCCTGGCTGCACCTCAGCTCCTGACCAAGCAGAGCCG < 41bp 0.498470306887779 0.717141951476786 NA NA prediction 0.434283902953573 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43777370 chr1:43777369 nonsynonymous SNV 0.985 0 20 hm7G_associated_SNPs_26164 0 0 0 0 1 TIE1 chr1:43777342 3'AG 43777342 Downstream 28bp 23839 chr4 187179225 187179225 1 + G T LUAD 187179226 + 187179206 187179246 41 ACAATGGAATGTGGCGTTTGGTGGGCATCACCAGCTGGGGT ACAATGGAATGTGGCGTTTTGTGGGCATCACCAGCTGGGGT < 41bp 0.665107606934487 0.882249499934604 NA NA prediction 0.434283786000233 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187179226 chr4:187179225 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_26165 0 0 0 0 1 KLKB1 chr4:187179175 3'AG 187179175 Downstream 51bp 23840 chr14 93397681 93397681 1 + G A COAD 93397682 + 93397662 93397702 41 AAGTGGTGAAGCCACAGACGGAGCCAGGCCCCAGGCCCTCC AAGTGGTGAAGCCACAGACAGAGCCAGGCCCCAGGCCCTCC < 41bp 0.512993128510738 0.730119119632655 NA NA prediction 0.434251982243833 Functional Gain - CHGA ENSG00000100604 CDS Human protein_coding chr14:93397682 chr14:93397681 nonsynonymous SNV 0.191 1 20 hm7G_associated_SNPs_26167 0 0 0 0 1 CHGA chr14:93397595 3'AG 93397595 Downstream 87bp 23841 chr17 48252736 48252736 1 + G T UCEC 48252737 + 48252717 48252757 41 CATGTTCAATGTGCACACAGGTGAGCGGCTGCCTCCCCGCG CATGTTCAATGTGCACACATGTGAGCGGCTGCCTCCCCGCG < 41bp 0.680855864366867 0.897977210234785 NA NA prediction 0.434242691735835 Functional Gain - SGCA ENSG00000108823 CDS Human transcribed_unitary_pseudogene chr17:48252737 chr17:48252736 nonsynonymous SNV 0.571 5 20 hm7G_associated_SNPs_26168 0 0 0 0 1 SGCA chr17:48252810 5'GT 48252810 Upstream 75bp 23842 chr12 266236 266236 1 + G A LIHC 266237 + 266217 266257 41 CCAGCATGGAGCTGGACGAGGCCCTGCGCAAGTTCCAGGCA CCAGCATGGAGCTGGACGAAGCCCTGCGCAAGTTCCAGGCA < 41bp 0.489350669406553 0.717108562265273 NA NA prediction 0.434217124530547 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:266237 chr12:266236 synonymous SNV . 0 20 hm7G_associated_SNPs_26170 0 0 0 0 2 IQSEC3 chr12:266191 3'AG 266191 Downstream 46bp 23843 chr12 266236 266236 1 + G A LIHC 266237 + 266217 266257 41 CCAGCATGGAGCTGGACGAGGCCCTGCGCAAGTTCCAGGCA CCAGCATGGAGCTGGACGAAGCCCTGCGCAAGTTCCAGGCA < 41bp 0.489350669406553 0.717108562265273 NA NA prediction 0.434217124530547 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:266237 chr12:266236 synonymous SNV . 0 20 hm7G_associated_SNPs_26170 0 0 0 0 2 IQSEC3 chr12:266313 5'GT 266313 Upstream 78bp 23844 chr16 53922844 53922844 1 + G T COAD 53922845 + 53922825 53922865 41 GCTCAACTGGAAGCACTGTGGAAGAAGATGGAGGGTGTGGT GCTCAACTGGAAGCACTGTTGAAGAAGATGGAGGGTGTGGT < 41bp 0.674942442820558 0.892031877058549 NA NA prediction 0.434178868475983 Functional Gain - FTO ENSG00000140718 CDS Human protein_coding chr16:53922845 chr16:53922844 nonsynonymous SNV 0.950 4 20 hm7G_associated_SNPs_26173 0 0 1 0 1 FTO chr16:53922863 5'GT 53922863 Upstream 20bp 23845 chr19 7982638 7982638 1 + G A rs374527539 7982639 + 7982619 7982659 41 GCCCTGAGCCTCCCGCGCCGGCCCCCGCGGCCCTGGAACCC GCCCTGAGCCTCCCGCGCCAGCCCCCGCGGCCCTGGAACCC < 41bp 0.54566236610666 0.762742597963592 NA NA prediction 0.434160463713866 Functional Gain - TGFBR3L ENSG00000260001 CDS Human protein_coding chr19:7982639 chr19:7982638 synonymous SNV . 0 20 hm7G_associated_SNPs_26176 0 0 0 0 1 TGFBR3L chr19:7982586 3'AG 7982586 Downstream 53bp 23846 chr9 33240224 33240224 1 + G A SKCM 33240225 + 33240205 33240245 41 GCATGGCCGTCCGCCAGTGGGTAATCGCCCTGGCCTTGGCT GCATGGCCGTCCGCCAGTGAGTAATCGCCCTGGCCTTGGCT < 41bp 0.491860984050447 0.717074217470971 NA NA prediction 0.434148434941943 Functional Gain - SPINK4 ENSG00000122711 CDS Human protein_coding chr9:33240225 chr9:33240224 stopgain 0.013 0 20 hm7G_associated_SNPs_26178 0 0 0 0 1 SPINK4 chr9:33240267 5'GT 33240267 Upstream 44bp 23847 chr7 142562336 142562336 1 + G T LUAD 142562337 + 142562317 142562357 41 CTCCCTGGTGGCAGCTGTGGGCACCTGTGTGGCTCATGCAG CTCCCTGGTGGCAGCTGTGTGCACCTGTGTGGCTCATGCAG < 41bp 0.367444555441969 0.717071000722986 NA NA prediction 0.434142001445972 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142562337 chr7:142562336 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26179 0 0 1 0 1 EPHB6 chr7:142562289 3'AG 142562289 Downstream 48bp 23848 chr5 156723745 156723745 1 + C T STAD 156723746 + 156723726 156723766 41 ACAGTAGAGGTGCTGGAGCCGGAGGTCACCAAGCTCATGAA ACAGTAGAGGTGCTGGAGCTGGAGGTCACCAAGCTCATGAA < 41bp 0.501236999667316 0.718306322992067 NA NA prediction 0.434138646649501 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156723746 chr5:156723745 nonsynonymous SNV 0.884 4 20 hm7G_associated_SNPs_26180 0 0 1 0 1 CYFIP2 chr5:156723782 5'GT 156723782 Upstream 38bp 23849 chrX 89177129 89177129 1 + G T LUAD 89177130 + 89177110 89177150 41 CTGAGACCCAAAGCCCGGTGGAAAAAGACAGCCCGGCGAAG CTGAGACCCAAAGCCCGGTTGAAAAAGACAGCCCGGCGAAG < 41bp 0.673517501628777 0.890586815306002 NA NA prediction 0.434138627354451 Functional Gain - TGIF2LX ENSG00000153779 CDS Human protein_coding chrX:89177130 chrX:89177129 synonymous SNV . 0 20 hm7G_associated_SNPs_26181 0 0 0 0 1 TGIF2LX chrX:89177064 3'AG 89177064 Downstream 66bp 23850 chr2 133175390 133175390 1 + G T THCA 133175391 + 133175371 133175411 41 CCAGAAGGGCTCGCTGGCCGGGGGCACGCGGCCTCCGCAGC CCAGAAGGGCTCGCTGGCCTGGGGCACGCGGCCTCCGCAGC < 41bp 0.380039755295875 0.717065896066707 NA NA prediction 0.434131792133415 Functional Gain - GPR39 ENSG00000183840 CDS Human protein_coding chr2:133175391 chr2:133175390 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_26183 0 0 0 0 1 GPR39 chr2:133175471 5'GT 133175471 Upstream 82bp 23851 chr2 26950540 26950540 1 + G A GBM 26950541 + 26950521 26950561 41 CCACTTTCCCCCAGGCTACGGGCACGCGGCACCCAGCACGG CCACTTTCCCCCAGGCTACAGGCACGCGGCACCCAGCACGG < 41bp 0.511106384881923 0.72816285259703 NA NA prediction 0.434112935430213 Functional Gain - KCNK3 ENSG00000171303 CDS Human protein_coding chr2:26950541 chr2:26950540 nonsynonymous SNV 0.947 5 20 hm7G_associated_SNPs_26186 1 0 0 0 1 KCNK3 chr2:26950535 3'AG 26950535 Downstream 6bp 23852 chr7 1026369 1026369 1 + G A SKCM 1026370 + 1026350 1026390 41 ACCCTCCTGGAGGCGCGGAGGCCCCACGTGTGCCCGGGGGA ACCCTCCTGGAGGCGCGGAAGCCCCACGTGTGCCCGGGGGA < 41bp 0.552638228308884 0.769694528916496 NA NA prediction 0.434112601215225 Functional Gain - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1026370 chr7:1026369 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_26187 0 0 1 0 1 CYP2W1 chr7:1026433 5'GT 1026433 Upstream 65bp 23853 chr2 163204108 163204108 1 + G T SARC 163204109 + 163204089 163204129 41 TTGGAAATTTTAGCATTCAGGTGCCAGGAATGCAGATGGGA TTGGAAATTTTAGCATTCATGTGCCAGGAATGCAGATGGGA < 41bp 0.665859916540611 0.882908768086696 NA NA prediction 0.43409770309217 Functional Gain - GCA ENSG00000115271 CDS Human protein_coding chr2:163204109 chr2:163204108 nonsynonymous SNV 0.846 0 20 hm7G_associated_SNPs_26189 0 0 1 0 1 GCA chr2:163204088 3'AG 163204088 Downstream 21bp 23854 chr19 41442157 41442157 1 + G T UCEC 41442158 + 41442138 41442178 41 TCATGGACCCAGTCTACCAGGGATATGGTGAGGGCTTCAGA TCATGGACCCAGTCTACCATGGATATGGTGAGGGCTTCAGA < 41bp 0.40685597494946 0.717042071353932 NA NA prediction 0.434084142707865 Functional Gain - CYP2B7P ENSG00000256612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr19:41442158 chr19:41442157 . . 0 20 hm7G_associated_SNPs_26190 0 0 0 1 1 CYP2B7P chr19:41442164 5'GT 41442164 Upstream 8bp 23855 chr17 1937074 1937074 1 + G T LIHC 1937075 + 1937055 1937095 41 TCTCTGCTCGTCTTGCAGTGGCCTTGCAAATGCCGGAAGGC TCTCTGCTCGTCTTGCAGTTGCCTTGCAAATGCCGGAAGGC < 41bp 0.382736846066084 0.717022992624116 NA NA prediction 0.434045985248231 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1937075 chr17:1937074 synonymous SNV . 0 20 hm7G_associated_SNPs_26195 0 0 1 1 2 DPH1 chr17:1937073 3'AG 1937073 Downstream 2bp 23856 chr17 1937074 1937074 1 + G T LIHC 1937075 + 1937055 1937095 41 TCTCTGCTCGTCTTGCAGTGGCCTTGCAAATGCCGGAAGGC TCTCTGCTCGTCTTGCAGTTGCCTTGCAAATGCCGGAAGGC < 41bp 0.382736846066084 0.717022992624116 NA NA prediction 0.434045985248231 Functional Gain - DPH1 ENSG00000108963 CDS Human protein_coding chr17:1937075 chr17:1937074 synonymous SNV . 0 20 hm7G_associated_SNPs_26195 0 0 1 1 2 DPH1 chr17:1937136 5'GT 1937136 Upstream 63bp 23857 chr8 145134859 145134859 1 + G A rs557258449 145134860 + 145134840 145134880 41 TTCCAGATCCGGGGCTCCCGGGCTCGAGCCCTGCCGGACAG TTCCAGATCCGGGGCTCCCAGGCTCGAGCCCTGCCGGACAG < 41bp 0.490258824583788 0.717011671194886 NA NA prediction 0.434023342389771 Functional Gain - EXOSC4 ENSG00000178896 CDS Human protein_coding chr8:145134860 chr8:145134859 nonsynonymous SNV 0.976 1 20 hm7G_associated_SNPs_26197 0 0 1 0 1 EXOSC4 chr8:145134846 3'AG 145134846 Downstream 14bp 23858 chr17 76127738 76127738 1 + G A rs35748721 76127739 + 76127719 76127759 41 AGCCGGAGGAGCTGTGGGAGGCAGAGATGGAGCGGCTGCGC AGCCGGAGGAGCTGTGGGAAGCAGAGATGGAGCGGCTGCGC < 41bp 0.546848836923202 0.763855448298594 NA NA prediction 0.434013222750783 Functional Gain - TMC8 ENSG00000167895 CDS Human protein_coding chr17:76127739 chr17:76127738 synonymous SNV . 0 20 hm7G_associated_SNPs_26198 0 0 0 0 1 TMC8 chr17:76127818 5'GT 76127818 Upstream 81bp 23859 chr22 45571865 45571865 1 + G T STAD 45571866 + 45571846 45571886 41 ATTTGGTAGTGGCGCTGGAGGGAAGCCTTTGGAAGGACTGT ATTTGGTAGTGGCGCTGGATGGAAGCCTTTGGAAGGACTGT < 41bp 0.688115495128466 0.905118606499181 NA NA prediction 0.434006222741431 Functional Gain - NUP50 ENSG00000093000 CDS Human protein_coding chr22:45571866 chr22:45571865 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_26199 0 0 1 0 2 NUP50 chr22:45571775 3'AG 45571775 Downstream 91bp 23860 chr22 45571865 45571865 1 + G T STAD 45571866 + 45571846 45571886 41 ATTTGGTAGTGGCGCTGGAGGGAAGCCTTTGGAAGGACTGT ATTTGGTAGTGGCGCTGGATGGAAGCCTTTGGAAGGACTGT < 41bp 0.688115495128466 0.905118606499181 NA NA prediction 0.434006222741431 Functional Gain - NUP50 ENSG00000093000 CDS Human protein_coding chr22:45571866 chr22:45571865 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_26199 0 0 1 0 2 NUP50 chr22:45571961 5'GT 45571961 Upstream 97bp 23861 chr17 48247506 48247506 1 + G A SKCM 48247507 + 48247487 48247527 41 CTGAGCTCTCTGTGCAGGTGGATAAGTCAGTGCCGGAGCCT CTGAGCTCTCTGTGCAGGTAGATAAGTCAGTGCCGGAGCCT < 41bp 0.504205876267935 0.721208859534103 NA NA prediction 0.434005966532337 Functional Gain - SGCA ENSG00000108823 CDS Human protein_coding chr17:48247507 chr17:48247506 synonymous SNV . 0 20 hm7G_associated_SNPs_26200 0 0 0 0 1 SGCA chr17:48247504 3'AG 48247504 Downstream 3bp 23862 chr1 90472968 90472968 1 + G T UCEC 90472969 + 90472949 90472989 41 GCGAGATCTGTACAGATCTGGCTATGGTTTTAATGAACCCG GCGAGATCTGTACAGATCTTGCTATGGTTTTAATGAACCCG < 41bp 0.380972299977501 0.717000930084733 NA NA prediction 0.434001860169467 Functional Gain - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90472969 chr1:90472968 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26201 0 0 1 0 1 ZNF326 chr1:90472904 3'AG 90472904 Downstream 65bp 23863 chr19 4159761 4159761 1 + G A BLCA 4159762 + 4159742 4159782 41 TGAAAGACCTCCTCCTTTCGGGCAGCAGTGGGGACCTGGTG TGAAAGACCTCCTCCTTTCAGGCAGCAGTGGGGACCTGGTG < 41bp 0.521349165661474 0.738342232547315 NA NA prediction 0.433986133771683 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4159762 chr19:4159761 synonymous SNV . 0 20 hm7G_associated_SNPs_26203 0 0 0 0 1 CREB3L3 chr19:4159779 5'GT 4159779 Upstream 19bp 23864 chr19 41125314 41125314 1 + G T COAD 41125315 + 41125295 41125335 41 CCTGTGTGAAAATGTCGAAGGCTCCTTCCTCTGTGTCTGCC CCTGTGTGAAAATGTCGAATGCTCCTTCCTCTGTGTCTGCC < 41bp 0.368542099413466 0.716992541096013 NA NA prediction 0.433985082192026 Functional Gain - LTBP4 ENSG00000090006 CDS Human protein_coding chr19:41125315 chr19:41125314 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_26205 0 0 1 0 1 LTBP4 chr19:41125252 3'AG 41125252 Downstream 63bp 23865 chr5 55204233 55204233 1 + G T PRAD 55204234 + 55204214 55204254 41 CCAAGCTGAAGGTGGAAAAGGATTCTGTAAGCACGCCCATA CCAAGCTGAAGGTGGAAAATGATTCTGTAAGCACGCCCATA < 41bp 0.681804984898272 0.898791640675849 NA NA prediction 0.433973311555154 Functional Gain - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55204234 chr5:55204233 stopgain 0.991 0 20 hm7G_associated_SNPs_26207 0 0 0 0 1 IL31RA chr5:55204239 5'GT 55204239 Upstream 7bp 23866 chr1 40701547 40701547 1 + G T LUAD 40701548 + 40701528 40701568 41 GTGAAGATGAGGAAATGAAGGCATCAGTTTGTAAAACAATT GTGAAGATGAGGAAATGAATGCATCAGTTTGTAAAACAATT < 41bp 0.407178644881832 0.71698202730531 NA NA prediction 0.433964054610621 Functional Gain - RLF ENSG00000117000 CDS Human protein_coding chr1:40701548 chr1:40701547 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_26208 0 0 1 0 1 RLF chr1:40701464 3'AG 40701464 Downstream 84bp 23867 chr2 136389288 136389288 1 + G T LUSC 136389289 + 136389269 136389309 41 TCTTCATACTTTGTTTCAGGGACAGAATGATGCTGCTGAAA TCTTCATACTTTGTTTCAGTGACAGAATGATGCTGCTGAAA < 41bp 0.393097734068579 0.716967602078995 NA NA prediction 0.433935204157989 Functional Gain - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136389289 chr2:136389288 stopgain 1.000 2 20 hm7G_associated_SNPs_26211 0 0 1 0 1 R3HDM1 chr2:136389347 5'GT 136389347 Upstream 60bp 23868 chr19 4684695 4684695 1 - C A UCEC 4684694 - 4684674 4684714 41 GCGAGGGCTTCGGTTCGAAGGGGCCCTGAAAAACCAAATGG GCGAGGGCTTCGGTTCGAATGGGCCCTGAAAAACCAAATGG < 41bp 0.361436627312511 0.716958290423859 NA NA prediction 0.433916580847717 Functional Gain - DPP9 ENSG00000142002 CDS Human protein_coding chr19:4684694 chr19:4684695 nonsynonymous SNV 0.807 4 20 hm7G_associated_SNPs_26212 0 0 1 0 1 DPP9 chr19:4684675 5'GT 4684675 Upstream 21bp 23869 chrX 122616857 122616857 1 + G T UCEC 122616858 + 122616838 122616878 41 TTATGCTACATACAGAGAAGGCTACAACGTGTATGGAACAG TTATGCTACATACAGAGAATGCTACAACGTGTATGGAACAG < 41bp 0.392299414537186 0.716958163572707 NA NA prediction 0.433916327145414 Functional Gain - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122616858 chrX:122616857 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26213 0 0 0 0 1 GRIA3 chrX:122616897 5'GT 122616897 Upstream 41bp 23870 chr8 91962088 91962088 1 + G T THCA 91962089 + 91962069 91962109 41 TACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAA TACATGATCTATGAGTTCTTGGAGAATAGTAGTGTATGGAA < 41bp 0.659775599728679 0.876725018044578 NA NA prediction 0.433898836631798 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91962089 chr8:91962088 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26216 0 0 0 0 2 NECAB1 chr8:91962035 3'AG 91962035 Downstream 54bp 23871 chr8 91962088 91962088 1 + G T THCA 91962089 + 91962069 91962109 41 TACATGATCTATGAGTTCTGGGAGAATAGTAGTGTATGGAA TACATGATCTATGAGTTCTTGGAGAATAGTAGTGTATGGAA < 41bp 0.659775599728679 0.876725018044578 NA NA prediction 0.433898836631798 Functional Gain - NECAB1 ENSG00000123119 CDS Human protein_coding chr8:91962089 chr8:91962088 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26216 0 0 0 0 2 NECAB1 chr8:91962112 5'GT 91962112 Upstream 25bp 23872 chr7 44747304 44747304 1 + C T LUAD 44747305 + 44747285 44747325 41 CTACGTGAAGCCAAGACTTCGGACCACCATCAGCCGCGCCA CTACGTGAAGCCAAGACTTTGGACCACCATCAGCCGCGCCA < 41bp 0.501356621459178 0.718302726202185 NA NA prediction 0.433892209486015 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44747305 chr7:44747304 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_26217 0 0 0 0 1 OGDH chr7:44747335 5'GT 44747335 Upstream 32bp 23873 chr19 2250469 2250469 1 + G A rs17854573 2250470 + 2250450 2250490 41 TGACGAGGGCTGGGCTGCCGGGTGCCCAGGTACCAGGGAGT TGACGAGGGCTGGGCTGCCAGGTGCCCAGGTACCAGGGAGT < 41bp 0.482385596357232 0.716924671794413 NA NA prediction 0.433849343588826 Functional Gain - AMH ENSG00000104899 CDS Human protein_coding chr19:2250470 chr19:2250469 synonymous SNV . 0 20 hm7G_associated_SNPs_26220 0 0 1 0 1 AMH chr19:2250478 5'GT 2250478 Upstream 10bp 23874 chr7 65557768 65557768 1 + G A SKCM 65557769 + 65557749 65557789 41 CCCCAGCCCCCTGTTCTCGGGCGACGTGATCTGCGTGTGGG CCCCAGCCCCCTGTTCTCGAGCGACGTGATCTGCGTGTGGG < 41bp 0.511401329036346 0.728324604626784 NA NA prediction 0.433846551180876 Functional Gain - ASL ENSG00000126522 CDS Human protein_coding chr7:65557769 chr7:65557768 nonsynonymous SNV 0.025 1 20 hm7G_associated_SNPs_26221 0 0 1 0 1 ASL chr7:65557755 3'AG 65557755 Downstream 14bp 23875 chr3 169501285 169501285 1 + G T LIHC 169501286 + 169501266 169501306 41 TGAAAAACCATACATATGTGGTATTTGTGGGAAAAGTTTTA TGAAAAACCATACATATGTTGTATTTGTGGGAAAAGTTTTA < 41bp 0.402193469178566 0.716920078020946 NA NA prediction 0.433840156041893 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169501286 chr3:169501285 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26222 0 0 0 0 2 MYNN chr3:169501265 3'AG 169501265 Downstream 21bp 23876 chr3 169501285 169501285 1 + G T LIHC 169501286 + 169501266 169501306 41 TGAAAAACCATACATATGTGGTATTTGTGGGAAAAGTTTTA TGAAAAACCATACATATGTTGTATTTGTGGGAAAAGTTTTA < 41bp 0.402193469178566 0.716920078020946 NA NA prediction 0.433840156041893 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169501286 chr3:169501285 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26222 0 0 0 0 2 MYNN chr3:169501348 5'GT 169501348 Upstream 64bp 23877 chr9 130224572 130224572 1 + C T UCEC 130224573 + 130224553 130224593 41 AGACACCGTGGGGGAGCTTCGAAGCCTGCGTACCCTCAACA AGACACCGTGGGGGAGCTTTGAAGCCTGCGTACCCTCAACA < 41bp 0.504130888696631 0.721040062546858 NA NA prediction 0.433818347700454 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130224573 chr9:130224572 stopgain 0.886 1 20 hm7G_associated_SNPs_26224 0 0 1 0 2 LRSAM1 chr9:130224531 3'AG 130224531 Downstream 42bp 23878 chr9 130224572 130224572 1 + C T UCEC 130224573 + 130224553 130224593 41 AGACACCGTGGGGGAGCTTCGAAGCCTGCGTACCCTCAACA AGACACCGTGGGGGAGCTTTGAAGCCTGCGTACCCTCAACA < 41bp 0.504130888696631 0.721040062546858 NA NA prediction 0.433818347700454 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130224573 chr9:130224572 stopgain 0.886 1 20 hm7G_associated_SNPs_26224 0 0 1 0 2 LRSAM1 chr9:130224652 5'GT 130224652 Upstream 81bp 23879 chr11 60889159 60889159 1 + G A rs35979264 60889160 + 60889140 60889180 41 CCGTGGAGGTGCGCCAGGGGGCTCAGTGGGCAGCCCTGTGT CCGTGGAGGTGCGCCAGGGAGCTCAGTGGGCAGCCCTGTGT < 41bp 0.56161985645879 0.778524099377983 NA NA prediction 0.433808485838386 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60889160 chr11:60889159 synonymous SNV . 0 20 hm7G_associated_SNPs_26225 0 0 0 0 1 CD5 chr11:60889083 3'AG 60889083 Downstream 77bp 23880 chr12 58008137 58008137 1 + G T THCA 58008138 + 58008118 58008158 41 TTCTTGCAAGAGCTACAACGGTGTCTGAAAGATCCTGATTG TTCTTGCAAGAGCTACAACTGTGTCTGAAAGATCCTGATTG < 41bp 0.377924536913294 0.716903911057146 NA NA prediction 0.433807822114291 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58008138 chr12:58008137 nonsynonymous SNV 0.051 1 20 hm7G_associated_SNPs_26226 0 0 1 0 2 ARHGEF25 chr12:58008114 3'AG 58008114 Downstream 24bp 23881 chr12 58008137 58008137 1 + G T THCA 58008138 + 58008118 58008158 41 TTCTTGCAAGAGCTACAACGGTGTCTGAAAGATCCTGATTG TTCTTGCAAGAGCTACAACTGTGTCTGAAAGATCCTGATTG < 41bp 0.377924536913294 0.716903911057146 NA NA prediction 0.433807822114291 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58008138 chr12:58008137 nonsynonymous SNV 0.051 1 20 hm7G_associated_SNPs_26226 0 0 1 0 2 ARHGEF25 chr12:58008183 5'GT 58008183 Upstream 47bp 23882 chr19 41038574 41038574 1 + G A rs814501 41038575 + 41038555 41038595 41 GATGCTGATGGCGCGGGATGGCACGCGGGAGGACAACCACA GATGCTGATGGCGCGGGATAGCACGCGGGAGGACAACCACA < 41bp 0.498670114611751 0.716899643054043 NA NA prediction 0.433799286108086 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41038575 chr19:41038574 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_26227 0 0 1 0 1 SPTBN4 chr19:41038532 3'AG 41038532 Downstream 43bp 23883 chr7 99217613 99217613 1 + G T UCEC 99217614 + 99217594 99217634 41 AAAGAGCACTGGAGGCCAAGGCGGTGGGTGAGGAGGGGATC AAAGAGCACTGGAGGCCAATGCGGTGGGTGAGGAGGGGATC < 41bp 0.386150051504856 0.716896964113456 NA NA prediction 0.433793928226911 Functional Gain - ZSCAN25 ENSG00000197037 CDS Human protein_coding chr7:99217614 chr7:99217613 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26228 0 0 1 0 2 ZSCAN25 chr7:99217616 5'GT 99217616 Upstream 4bp 23884 chr7 99217613 99217613 1 + G T UCEC 99217614 + 99217594 99217634 41 AAAGAGCACTGGAGGCCAAGGCGGTGGGTGAGGAGGGGATC AAAGAGCACTGGAGGCCAATGCGGTGGGTGAGGAGGGGATC < 41bp 0.386150051504856 0.716896964113456 NA NA prediction 0.433793928226911 Functional Gain - ZSCAN25 ENSG00000197037 CDS Human protein_coding chr7:99217614 chr7:99217613 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26228 0 0 1 0 2 ZSCAN25 chr7:99217620 5'GT 99217620 Upstream 8bp 23885 chr11 60182930 60182930 1 + G T LUAD 60182931 + 60182911 60182951 41 TTCTGTTTTTCTTGCCTTCGGATGTTACTCAAAATAGTGAA TTCTGTTTTTCTTGCCTTCTGATGTTACTCAAAATAGTGAA < 41bp 0.482131480272232 0.716895293598935 NA NA prediction 0.433790587197869 Functional Gain - MS4A14 ENSG00000166928 CDS Human protein_coding chr11:60182931 chr11:60182930 synonymous SNV . 0 20 hm7G_associated_SNPs_26230 0 0 0 0 1 MS4A14 chr11:60182910 3'AG 60182910 Downstream 21bp 23886 chr12 132636145 132636145 1 + G T COAD 132636146 + 132636126 132636166 41 ATCTGTAACCTGCTGCGCCGGCACCCTGCCTGCCGGGTCCT ATCTGTAACCTGCTGCGCCTGCACCCTGCCTGCCGGGTCCT < 41bp 0.687327465740269 0.904219837688163 NA NA prediction 0.433784743895787 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636146 chr12:132636145 nonsynonymous SNV 0.019 4 20 hm7G_associated_SNPs_26231 0 0 1 0 1 NOC4L chr12:132636189 5'GT 132636189 Upstream 45bp 23887 chr20 2384241 2384241 1 + G A rs148889050 2384242 + 2384222 2384262 41 CCCAGGTGTGTTCCGGTGCGGCCCAGCCTCAGTCACCGCCA CCCAGGTGTGTTCCGGTGCAGCCCAGCCTCAGTCACCGCCA < 41bp 0.536695815317614 0.753580511841764 NA NA prediction 0.433769393048299 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384242 chr20:2384241 nonsynonymous SNV 0.820 5 20 hm7G_associated_SNPs_26234 0 0 0 0 1 TGM6 chr20:2384227 3'AG 2384227 Downstream 15bp 23888 chr2 102472455 102472455 1 + G T UCEC 102472456 + 102472436 102472476 41 TAGCAACAAAGGAGAGAGCGGGAAGCTAGAAGGCAGCAGGA TAGCAACAAAGGAGAGAGCTGGAAGCTAGAAGGCAGCAGGA < 41bp 0.674258688323032 0.891129039583226 NA NA prediction 0.433740702520387 Functional Gain - MAP4K4 ENSG00000071054 CDS Human protein_coding chr2:102472456 chr2:102472455 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_26236 0 0 1 0 1 MAP4K4 chr2:102472439 3'AG 102472439 Downstream 17bp 23889 chr2 242813902 242813902 1 + G A COAD 242813903 + 242813883 242813923 41 GTCCGGGGACCTGGGACTCGGCCCATGTGCACGTCCTCTTC GTCCGGGGACCTGGGACTCAGCCCATGTGCACGTCCTCTTC < 41bp 0.483316456049993 0.716868641338387 NA NA prediction 0.433737282676774 Functional Gain - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242813903 chr2:242813902 synonymous SNV . 0 20 hm7G_associated_SNPs_26238 0 0 0 0 1 RTP5 chr2:242813866 3'AG 242813866 Downstream 37bp 23890 chr6 158323016 158323016 1 + G T UCEC 158323017 + 158322997 158323037 41 TTCAGAGTCAGCTGATGCAGGCGGCGCTCAGCGAGGAAACA TTCAGAGTCAGCTGATGCATGCGGCGCTCAGCGAGGAAACA < 41bp 0.689012269370944 0.905876296709886 NA NA prediction 0.433728054677884 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158323017 chr6:158323016 nonsynonymous SNV 0.091 3 20 hm7G_associated_SNPs_26240 0 0 1 0 2 SNX9 chr6:158322930 3'AG 158322930 Downstream 87bp 23891 chr6 158323016 158323016 1 + G T UCEC 158323017 + 158322997 158323037 41 TTCAGAGTCAGCTGATGCAGGCGGCGCTCAGCGAGGAAACA TTCAGAGTCAGCTGATGCATGCGGCGCTCAGCGAGGAAACA < 41bp 0.689012269370944 0.905876296709886 NA NA prediction 0.433728054677884 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158323017 chr6:158323016 nonsynonymous SNV 0.091 3 20 hm7G_associated_SNPs_26240 0 0 1 0 2 SNX9 chr6:158323077 5'GT 158323077 Upstream 62bp 23892 chr17 40838024 40838024 1 + C T rs62001916 40838025 + 40838005 40838045 41 ACACCACCGTGAGCGCAGGCGGAGTCCTCAATGACCAGCAC ACACCACCGTGAGCGCAGGTGGAGTCCTCAATGACCAGCAC < 41bp 0.504235692137248 0.721094430327539 NA NA prediction 0.433717476380582 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40838025 chr17:40838024 synonymous SNV . 0 20 hm7G_associated_SNPs_26242 0 0 0 0 1 CNTNAP1 chr17:40837975 3'AG 40837975 Downstream 50bp 23893 chr11 7060055 7060055 1 + G T LUAD 7060056 + 7060036 7060076 41 TGTGTCTCTCAAAATCTTTGGCAAGATGAACCTGAAGGATC TGTGTCTCTCAAAATCTTTTGCAAGATGAACCTGAAGGATC < 41bp 0.379212359791747 0.716857322883141 NA NA prediction 0.433714645766282 Functional Gain - NLRP14 ENSG00000158077 CDS Human protein_coding chr11:7060056 chr11:7060055 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26243 0 0 0 0 1 NLRP14 chr11:7060106 5'GT 7060106 Upstream 52bp 23894 chr7 1026358 1026358 1 + G A SKCM 1026359 + 1026339 1026379 41 CCATTCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGTG CCATTCTGAGGACCCTCCTAGAGGCGCGGAGGCCCCACGTG < 41bp 0.521554384755329 0.738403702271644 NA NA prediction 0.43369863503263 Functional Gain - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1026359 chr7:1026358 synonymous SNV . 0 20 hm7G_associated_SNPs_26245 0 0 1 0 2 CYP2W1 chr7:1026260 3'AG 1026260 Downstream 99bp 23895 chr7 1026358 1026358 1 + G A SKCM 1026359 + 1026339 1026379 41 CCATTCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGTG CCATTCTGAGGACCCTCCTAGAGGCGCGGAGGCCCCACGTG < 41bp 0.521554384755329 0.738403702271644 NA NA prediction 0.43369863503263 Functional Gain - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1026359 chr7:1026358 synonymous SNV . 0 20 hm7G_associated_SNPs_26245 0 0 1 0 2 CYP2W1 chr7:1026433 5'GT 1026433 Upstream 76bp 23896 chr13 100635332 100635332 1 + G T LUSC 100635333 + 100635313 100635353 41 CCTTCCCCTGCCCCTTCCCGGGCTGTGGCAAAGTCTTCGCG CCTTCCCCTGCCCCTTCCCTGGCTGTGGCAAAGTCTTCGCG < 41bp 0.384486930535296 0.716848630689155 NA NA prediction 0.43369726137831 Functional Gain - ZIC2 ENSG00000043355 CDS Human protein_coding chr13:100635333 chr13:100635332 synonymous SNV . 0 20 hm7G_associated_SNPs_26246 0 0 1 0 1 ZIC2 chr13:100635393 5'GT 100635393 Upstream 62bp 23897 chr22 31042664 31042664 1 + G A SARC 31042665 + 31042645 31042685 41 CCAGCTTCTGCCTGCTGGCGGGTGCAGCCCTGGTGCTGGAG CCAGCTTCTGCCTGCTGGCAGGTGCAGCCCTGGTGCTGGAG < 41bp 0.529652927043956 0.746501528230284 NA NA prediction 0.433697202372656 Functional Gain - SLC35E4 ENSG00000100036 CDS Human protein_coding chr22:31042665 chr22:31042664 synonymous SNV . 0 20 hm7G_associated_SNPs_26247 0 0 0 0 1 SLC35E4 chr22:31042585 3'AG 31042585 Downstream 80bp 23898 chr20 1223293 1223293 1 + G T UCEC 1223294 + 1223274 1223314 41 AAAAGGAAAGGCAAAAAGAGGAGATTGCTCATAGATCCTAT AAAAGGAAAGGCAAAAAGATGAGATTGCTCATAGATCCTAT < 41bp 0.666687091592172 0.883518188757455 NA NA prediction 0.433662194330567 Functional Gain - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1223294 chr20:1223293 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_26249 0 0 0 0 1 RAD21L1 chr20:1223263 3'AG 1223263 Downstream 31bp 23899 chr1 218609453 218609453 1 + G T LUAD 218609454 + 218609434 218609474 41 TCACAACAGACCAACCGGCGGAAGAAGCGTGCTTTGGATGC TCACAACAGACCAACCGGCTGAAGAAGCGTGCTTTGGATGC < 41bp 0.416365516832404 0.716828241990444 NA NA prediction 0.433656483980888 Functional Gain - TGFB2 ENSG00000092969 CDS Human protein_coding chr1:218609454 chr1:218609453 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26250 0 0 0 0 2 TGFB2 chr1:218609427 3'AG 218609427 Downstream 27bp 23900 chr1 218609453 218609453 1 + G T LUAD 218609454 + 218609434 218609474 41 TCACAACAGACCAACCGGCGGAAGAAGCGTGCTTTGGATGC TCACAACAGACCAACCGGCTGAAGAAGCGTGCTTTGGATGC < 41bp 0.416365516832404 0.716828241990444 NA NA prediction 0.433656483980888 Functional Gain - TGFB2 ENSG00000092969 CDS Human protein_coding chr1:218609454 chr1:218609453 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26250 0 0 0 0 2 TGFB2 chr1:218609489 5'GT 218609489 Upstream 37bp 23901 chr16 31487381 31487381 1 + G A STAD 31487382 + 31487362 31487402 41 CCCCGAGCACTTCGTTTGCGGAGGCTGTTCCACCGCCCTGG CCCCGAGCACTTCGTTTGCAGAGGCTGTTCCACCGCCCTGG < 41bp 0.495256658750474 0.716812949501024 NA NA prediction 0.433625899002048 Functional Gain - TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31487382 chr16:31487381 nonsynonymous SNV 0.949 1 20 hm7G_associated_SNPs_26252 0 0 0 0 1 TGFB1I1 chr16:31487333 3'AG 31487333 Downstream 49bp 23902 chr17 4352532 4352532 1 + G A SKCM 4352533 + 4352513 4352553 41 GGCACCTCGTCTTGCAGCTGGAGTTTCGTGTGGTCGACCCT GGCACCTCGTCTTGCAGCTAGAGTTTCGTGTGGTCGACCCT < 41bp 0.501864881979096 0.718658326495108 NA NA prediction 0.433586889032024 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352533 chr17:4352532 stopgain 0.991 0 20 hm7G_associated_SNPs_26256 0 0 0 0 1 SPNS3 chr17:4352530 3'AG 4352530 Downstream 3bp 23903 chr5 109120549 109120549 1 + G T UCEC 109120550 + 109120530 109120570 41 GCACTGACAGAAGCCAGAAGGAATTTGGGACTGTTTCAACA GCACTGACAGAAGCCAGAATGAATTTGGGACTGTTTCAACA < 41bp 0.380584930686006 0.716788948602667 NA NA prediction 0.433577897205334 Functional Gain - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109120550 chr5:109120549 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_26257 0 0 1 0 1 MAN2A1 chr5:109120627 5'GT 109120627 Upstream 79bp 23904 chr2 197541395 197541395 1 + G T LIHC 197541396 + 197541376 197541416 41 CAAGATTGCGAGGTGAATTGGAAGCATCAATGCAAGAGAAG CAAGATTGCGAGGTGAATTTGAAGCATCAATGCAAGAGAAG < 41bp 0.383061676129825 0.716780854726936 NA NA prediction 0.433561709453872 Functional Gain - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541396 chr2:197541395 nonsynonymous SNV 0.798 3 20 hm7G_associated_SNPs_26259 0 0 1 3 1 CCDC150 chr2:197541455 5'GT 197541455 Upstream 61bp 23905 chr6 43222803 43222803 1 + G A SKCM 43222804 + 43222784 43222824 41 CAGCCTCGGAATGTGGCCGGGTTTCGAGGAACGGTTCGCTA CAGCCTCGGAATGTGGCCGAGTTTCGAGGAACGGTTCGCTA < 41bp 0.508014678437856 0.724791199530633 NA NA prediction 0.433553042185553 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222804 chr6:43222803 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26260 0 0 0 0 2 TTBK1 chr6:43222787 3'AG 43222787 Downstream 17bp 23906 chr6 43222803 43222803 1 + G A SKCM 43222804 + 43222784 43222824 41 CAGCCTCGGAATGTGGCCGGGTTTCGAGGAACGGTTCGCTA CAGCCTCGGAATGTGGCCGAGTTTCGAGGAACGGTTCGCTA < 41bp 0.508014678437856 0.724791199530633 NA NA prediction 0.433553042185553 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222804 chr6:43222803 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26260 0 0 0 0 2 TTBK1 chr6:43222852 5'GT 43222852 Upstream 50bp 23907 chr22 25264775 25264775 1 + C T UCEC 25264776 + 25264756 25264796 41 AAAGATGATGATGAGGCCACGGATTATGTGTTCAGGATCAT AAAGATGATGATGAGGCCATGGATTATGTGTTCAGGATCAT < 41bp 0.511300447633689 0.728075565003637 NA NA prediction 0.433550234739895 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264776 chr22:25264775 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_26262 0 0 0 0 2 SGSM1 chr22:25264690 3'AG 25264690 Downstream 86bp 23908 chr22 25264775 25264775 1 + C T UCEC 25264776 + 25264756 25264796 41 AAAGATGATGATGAGGCCACGGATTATGTGTTCAGGATCAT AAAGATGATGATGAGGCCATGGATTATGTGTTCAGGATCAT < 41bp 0.511300447633689 0.728075565003637 NA NA prediction 0.433550234739895 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264776 chr22:25264775 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_26262 0 0 0 0 2 SGSM1 chr22:25264822 5'GT 25264822 Upstream 48bp 23909 chr19 6833630 6833630 1 + G A SKCM 6833631 + 6833611 6833651 41 CCCTCCATGTGGCCGACATGGGCAAGGTACGAGTGGGAGGG CCCTCCATGTGGCCGACATAGGCAAGGTACGAGTGGGAGGG < 41bp 0.513559708636686 0.730333870344284 NA NA prediction 0.433548323415197 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833631 chr19:6833630 nonsynonymous SNV 0.827 1 20 hm7G_associated_SNPs_26263 0 0 0 0 2 VAV1 chr19:6833539 3'AG 6833539 Downstream 92bp 23910 chr19 6833630 6833630 1 + G A SKCM 6833631 + 6833611 6833651 41 CCCTCCATGTGGCCGACATGGGCAAGGTACGAGTGGGAGGG CCCTCCATGTGGCCGACATAGGCAAGGTACGAGTGGGAGGG < 41bp 0.513559708636686 0.730333870344284 NA NA prediction 0.433548323415197 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833631 chr19:6833630 nonsynonymous SNV 0.827 1 20 hm7G_associated_SNPs_26263 0 0 0 0 2 VAV1 chr19:6833636 5'GT 6833636 Upstream 7bp 23911 chr19 36594075 36594075 1 + G T STAD 36594076 + 36594056 36594096 41 AGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCCTGGAGGCC AGGTCCTCGCTGCAGGGAATGCTGAAGAGACCCTGGAGGCC < 41bp 0.374430773230972 0.716769785645653 NA NA prediction 0.433539571291306 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594076 chr19:36594075 nonsynonymous SNV 0.022 1 20 hm7G_associated_SNPs_26264 0 0 1 0 2 WDR62 chr19:36594058 3'AG 36594058 Downstream 18bp 23912 chr19 36594075 36594075 1 + G T STAD 36594076 + 36594056 36594096 41 AGGTCCTCGCTGCAGGGAAGGCTGAAGAGACCCTGGAGGCC AGGTCCTCGCTGCAGGGAATGCTGAAGAGACCCTGGAGGCC < 41bp 0.374430773230972 0.716769785645653 NA NA prediction 0.433539571291306 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36594076 chr19:36594075 nonsynonymous SNV 0.022 1 20 hm7G_associated_SNPs_26264 0 0 1 0 2 WDR62 chr19:36594109 5'GT 36594109 Upstream 35bp 23913 chr1 29391662 29391662 1 + G T STAD 29391663 + 29391643 29391683 41 CAATGGGCAAATCCCCACAGGAGAAGGAGTGAGTACTTTGT CAATGGGCAAATCCCCACATGAGAAGGAGTGAGTACTTTGT < 41bp 0.393857704983359 0.716768406207227 NA NA prediction 0.433536812414455 Functional Gain - EPB41 ENSG00000159023 CDS Human protein_coding chr1:29391663 chr1:29391662 stopgain 0.996 0 20 hm7G_associated_SNPs_26265 0 0 0 0 1 EPB41 chr1:29391670 5'GT 29391670 Upstream 9bp 23914 chr19 50774730 50774730 1 + C T UCEC 50774731 + 50774711 50774751 41 CTGCAGCTGGAGAAGGTGACGACAGAGGCAAAAATGAAGAA CTGCAGCTGGAGAAGGTGATGACAGAGGCAAAAATGAAGAA < 41bp 0.50788645612989 0.724651386858792 NA NA prediction 0.433529861457805 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50774731 chr19:50774730 nonsynonymous SNV 0.920 2 20 hm7G_associated_SNPs_26266 2 0 1 0 2 MYH14 chr19:50774666 3'AG 50774666 Downstream 65bp 23915 chr19 50774730 50774730 1 + C T UCEC 50774731 + 50774711 50774751 41 CTGCAGCTGGAGAAGGTGACGACAGAGGCAAAAATGAAGAA CTGCAGCTGGAGAAGGTGATGACAGAGGCAAAAATGAAGAA < 41bp 0.50788645612989 0.724651386858792 NA NA prediction 0.433529861457805 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50774731 chr19:50774730 nonsynonymous SNV 0.920 2 20 hm7G_associated_SNPs_26266 2 0 1 0 2 MYH14 chr19:50774803 5'GT 50774803 Upstream 74bp 23916 chr14 75278382 75278382 1 + G T LUAD 75278383 + 75278363 75278403 41 AGAAGAGGGGGTTTTGATAGGCCATCCTATGACCGGAAGTC AGAAGAGGGGGTTTTGATATGCCATCCTATGACCGGAAGTC < 41bp 0.371520790382698 0.716753455641222 NA NA prediction 0.433506911282444 Functional Gain - YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75278383 chr14:75278382 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26269 0 0 1 0 2 YLPM1 chr14:75278323 3'AG 75278323 Downstream 60bp 23917 chr14 75278382 75278382 1 + G T LUAD 75278383 + 75278363 75278403 41 AGAAGAGGGGGTTTTGATAGGCCATCCTATGACCGGAAGTC AGAAGAGGGGGTTTTGATATGCCATCCTATGACCGGAAGTC < 41bp 0.371520790382698 0.716753455641222 NA NA prediction 0.433506911282444 Functional Gain - YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75278383 chr14:75278382 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26269 0 0 1 0 2 YLPM1 chr14:75278441 5'GT 75278441 Upstream 60bp 23918 chr18 2573050 2573050 1 + G T LUSC 2573051 + 2573031 2573071 41 TGCAGGAGTTAAGATCCCAGGATGTAAATAAACAAGGCCTC TGCAGGAGTTAAGATCCCATGATGTAAATAAACAAGGCCTC < 41bp 0.680009171860864 0.896754716250128 NA NA prediction 0.433491088778528 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2573051 chr18:2573050 nonsynonymous SNV 0.567 0 20 hm7G_associated_SNPs_26271 0 0 1 0 2 NDC80 chr18:2572976 3'AG 2572976 Downstream 75bp 23919 chr18 2573050 2573050 1 + G T LUSC 2573051 + 2573031 2573071 41 TGCAGGAGTTAAGATCCCAGGATGTAAATAAACAAGGCCTC TGCAGGAGTTAAGATCCCATGATGTAAATAAACAAGGCCTC < 41bp 0.680009171860864 0.896754716250128 NA NA prediction 0.433491088778528 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2573051 chr18:2573050 nonsynonymous SNV 0.567 0 20 hm7G_associated_SNPs_26271 0 0 1 0 2 NDC80 chr18:2573085 5'GT 2573085 Upstream 36bp 23920 chrX 69424309 69424309 1 + G T LUSC 69424310 + 69424290 69424330 41 CTGTACCTTCCATGGCCGGGGCTTCACTCGCGGATCCTGGG CTGTACCTTCCATGGCCGGTGCTTCACTCGCGGATCCTGGG < 41bp 0.687073982587924 0.903817716695404 NA NA prediction 0.433487468214959 Functional Gain - DGAT2L6 ENSG00000184210 CDS Human protein_coding chrX:69424310 chrX:69424309 nonsynonymous SNV 0.064 4 20 hm7G_associated_SNPs_26272 0 0 0 0 1 DGAT2L6 chrX:69424366 5'GT 69424366 Upstream 58bp 23921 chr1 2491395 2491395 1 + G A UCEC 2491396 + 2491376 2491416 41 CTTACGCCACCTCCAGCCCGGGCCAGAGGGTGCAGAAGGGA CTTACGCCACCTCCAGCCCAGGCCAGAGGGTGCAGAAGGGA < 41bp 0.508970542084938 0.72570714496647 NA NA prediction 0.433473205763063 Functional Gain - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2491396 chr1:2491395 synonymous SNV . 0 20 hm7G_associated_SNPs_26274 0 0 1 0 1 TNFRSF14 chr1:2491417 5'GT 2491417 Upstream 23bp 23922 chr15 40937929 40937929 1 + G T STAD 40937930 + 40937910 40937950 41 TAAAGTCTTCACTCACCAAGGAAAAGTGGCTCTGTATGGCA TAAAGTCTTCACTCACCAATGAAAAGTGGCTCTGTATGGCA < 41bp 0.385329397458396 0.716734765605198 NA NA prediction 0.433469531210395 Functional Gain - KNL1 ENSG00000137812 CDS Human protein_coding chr15:40937930 chr15:40937929 stopgain 1.000 1 20 hm7G_associated_SNPs_26275 0 0 1 0 2 KNL1 chr15:40937854 3'AG 40937854 Downstream 76bp 23923 chr15 40937929 40937929 1 + G T STAD 40937930 + 40937910 40937950 41 TAAAGTCTTCACTCACCAAGGAAAAGTGGCTCTGTATGGCA TAAAGTCTTCACTCACCAATGAAAAGTGGCTCTGTATGGCA < 41bp 0.385329397458396 0.716734765605198 NA NA prediction 0.433469531210395 Functional Gain - KNL1 ENSG00000137812 CDS Human protein_coding chr15:40937930 chr15:40937929 stopgain 1.000 1 20 hm7G_associated_SNPs_26275 0 0 1 0 2 KNL1 chr15:40937970 5'GT 40937970 Upstream 42bp 23924 chr17 61613122 61613122 1 + G A GBM 61613123 + 61613103 61613143 41 GCTACTCTGAGTATGGGGCGGCTGTGCTCTTCTTGCTCATG GCTACTCTGAGTATGGGGCAGCTGTGCTCTTCTTGCTCATG < 41bp 0.509031354343194 0.725764823489194 NA NA prediction 0.433466938291998 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61613123 chr17:61613122 synonymous SNV . 0 20 hm7G_associated_SNPs_26276 0 0 0 0 2 KCNH6 chr17:61613030 3'AG 61613030 Downstream 93bp 23925 chr17 61613122 61613122 1 + G A GBM 61613123 + 61613103 61613143 41 GCTACTCTGAGTATGGGGCGGCTGTGCTCTTCTTGCTCATG GCTACTCTGAGTATGGGGCAGCTGTGCTCTTCTTGCTCATG < 41bp 0.509031354343194 0.725764823489194 NA NA prediction 0.433466938291998 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61613123 chr17:61613122 synonymous SNV . 0 20 hm7G_associated_SNPs_26276 0 0 0 0 2 KCNH6 chr17:61613184 5'GT 61613184 Upstream 63bp 23926 chr14 104639485 104639485 1 + G A STAD 104639486 + 104639466 104639506 41 GGGCGCGACCAGAGCCTGCGGGACCTGCTGGCCGAGGTGGC GGGCGCGACCAGAGCCTGCAGGACCTGCTGGCCGAGGTGGC < 41bp 0.488484989053745 0.716731698970953 NA NA prediction 0.433463397941906 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104639486 chr14:104639485 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_26277 0 0 0 0 1 KIF26A chr14:104639576 5'GT 104639576 Upstream 92bp 23927 chr17 31323887 31323887 1 + G T LIHC 31323888 + 31323868 31323908 41 CCTTGCTTATTTCACAAGCGGTTTCAACGCAGCTGCTTTGG CCTTGCTTATTTCACAAGCTGTTTCAACGCAGCTGCTTTGG < 41bp 0.67731799142358 0.894047642943085 NA NA prediction 0.433459303039009 Functional Gain - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31323888 chr17:31323887 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_26279 0 0 0 0 2 SPACA3 chr17:31323839 3'AG 31323839 Downstream 49bp 23928 chr17 31323887 31323887 1 + G T LIHC 31323888 + 31323868 31323908 41 CCTTGCTTATTTCACAAGCGGTTTCAACGCAGCTGCTTTGG CCTTGCTTATTTCACAAGCTGTTTCAACGCAGCTGCTTTGG < 41bp 0.67731799142358 0.894047642943085 NA NA prediction 0.433459303039009 Functional Gain - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31323888 chr17:31323887 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_26279 0 0 0 0 2 SPACA3 chr17:31323861 3'AG 31323861 Downstream 27bp 23929 chr19 11031607 11031607 1 + G A UCEC 11031608 + 11031588 11031628 41 CACCTACAACCTCAGCAGCGGGATGGCCGTGGCAGGTGAGC CACCTACAACCTCAGCAGCAGGATGGCCGTGGCAGGTGAGC < 41bp 0.534068541574339 0.750792288477772 NA NA prediction 0.433447493806866 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11031608 chr19:11031607 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_26282 0 0 1 0 2 CARM1 chr19:11031510 3'AG 11031510 Downstream 98bp 23930 chr19 11031607 11031607 1 + G A UCEC 11031608 + 11031588 11031628 41 CACCTACAACCTCAGCAGCGGGATGGCCGTGGCAGGTGAGC CACCTACAACCTCAGCAGCAGGATGGCCGTGGCAGGTGAGC < 41bp 0.534068541574339 0.750792288477772 NA NA prediction 0.433447493806866 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11031608 chr19:11031607 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_26282 0 0 1 0 2 CARM1 chr19:11031622 5'GT 11031622 Upstream 16bp 23931 chr3 186335070 186335070 1 + G T KIRC 186335071 + 186335051 186335091 41 ACGCCGCGAAAGCTGCCCTGGCCGCCTTCAACGCTCAGAAC ACGCCGCGAAAGCTGCCCTTGCCGCCTTCAACGCTCAGAAC < 41bp 0.356749643576452 0.71671825457832 NA NA prediction 0.43343650915664 Functional Gain - AHSG ENSG00000145192 CDS Human protein_coding chr3:186335071 chr3:186335070 synonymous SNV . 0 20 hm7G_associated_SNPs_26283 0 0 1 0 2 AHSG chr3:186334976 3'AG 186334976 Downstream 95bp 23932 chr3 186335070 186335070 1 + G T KIRC 186335071 + 186335051 186335091 41 ACGCCGCGAAAGCTGCCCTGGCCGCCTTCAACGCTCAGAAC ACGCCGCGAAAGCTGCCCTTGCCGCCTTCAACGCTCAGAAC < 41bp 0.356749643576452 0.71671825457832 NA NA prediction 0.43343650915664 Functional Gain - AHSG ENSG00000145192 CDS Human protein_coding chr3:186335071 chr3:186335070 synonymous SNV . 0 20 hm7G_associated_SNPs_26283 0 0 1 0 2 AHSG chr3:186335139 5'GT 186335139 Upstream 70bp 23933 chr16 84229436 84229436 1 + G A rs62049905 84229437 + 84229417 84229457 41 GCAGCCTGCCCCCCACCTCGGAAGGTGGCCTCCCGCACAGC GCAGCCTGCCCCCCACCTCAGAAGGTGGCCTCCCGCACAGC < 41bp 0.532812133568343 0.749512020485311 NA NA prediction 0.433399773833937 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84229437 chr16:84229436 synonymous SNV . 0 20 hm7G_associated_SNPs_26286 0 0 0 0 1 ADAD2 chr16:84229421 3'AG 84229421 Downstream 16bp 23934 chr22 51143261 51143261 1 + G A UCEC 51143262 + 51143242 51143282 41 GGGTGTGGCCTGGAGGGCCGGGCTGCGCACGGGAGACTTCC GGGTGTGGCCTGGAGGGCCAGGCTGCGCACGGGAGACTTCC < 41bp 0.549584820957973 0.766283935923911 NA NA prediction 0.433398229931876 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143262 chr22:51143261 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26287 0 0 1 0 2 SHANK3 chr22:51143166 3'AG 51143166 Downstream 96bp 23935 chr22 51143261 51143261 1 + G A UCEC 51143262 + 51143242 51143282 41 GGGTGTGGCCTGGAGGGCCGGGCTGCGCACGGGAGACTTCC GGGTGTGGCCTGGAGGGCCAGGCTGCGCACGGGAGACTTCC < 41bp 0.549584820957973 0.766283935923911 NA NA prediction 0.433398229931876 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143262 chr22:51143261 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26287 0 0 1 0 2 SHANK3 chr22:51143290 5'GT 51143290 Upstream 30bp 23936 chr9 95838125 95838125 1 + G A UCEC 95838126 + 95838106 95838146 41 CCAAGTCCTTCGTGGCAATGGTGCTTCCGTGGGGACCGTGC CCAAGTCCTTCGTGGCAATAGTGCTTCCGTGGGGACCGTGC < 41bp 0.527610234162354 0.744308191060165 NA NA prediction 0.433395913795622 Functional Gain - SUSD3 ENSG00000157303 CDS Human protein_coding chr9:95838126 chr9:95838125 nonsynonymous SNV 0.089 4 20 hm7G_associated_SNPs_26288 0 0 0 0 1 SUSD3 chr9:95838066 3'AG 95838066 Downstream 60bp 23937 chr16 28913250 28913250 1 + G A PAAD 28913251 + 28913231 28913271 41 TGGCATTGCCATGGGATCTGGCACTGCCGTGGCCAAGACTG TGGCATTGCCATGGGATCTAGCACTGCCGTGGCCAAGACTG < 41bp 0.521981246312826 0.738667917921244 NA NA prediction 0.433373343216836 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28913251 chr16:28913250 nonsynonymous SNV 0.972 5 20 hm7G_associated_SNPs_26289 0 0 1 0 1 ATP2A1 chr16:28913184 3'AG 28913184 Downstream 67bp 23938 chrX 130220601 130220601 1 + G T BLCA 130220602 + 130220582 130220622 41 GAAACCTCTGCTGAAGCCCGGGCTGCTGTCCTTGCTCAAAG GAAACCTCTGCTGAAGCCCTGGCTGCTGTCCTTGCTCAAAG < 41bp 0.372993585759303 0.716678279724041 NA NA prediction 0.433356559448082 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220602 chrX:130220601 nonsynonymous SNV 0.697 1 20 hm7G_associated_SNPs_26292 0 0 0 0 2 ARHGAP36 chrX:130220533 3'AG 130220533 Downstream 69bp 23939 chrX 130220601 130220601 1 + G T BLCA 130220602 + 130220582 130220622 41 GAAACCTCTGCTGAAGCCCGGGCTGCTGTCCTTGCTCAAAG GAAACCTCTGCTGAAGCCCTGGCTGCTGTCCTTGCTCAAAG < 41bp 0.372993585759303 0.716678279724041 NA NA prediction 0.433356559448082 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220602 chrX:130220601 nonsynonymous SNV 0.697 1 20 hm7G_associated_SNPs_26292 0 0 0 0 2 ARHGAP36 chrX:130220639 5'GT 130220639 Upstream 39bp 23940 chr11 66254074 66254074 1 + G A UCEC 66254075 + 66254055 66254095 41 GCACCCAGAAGAAGTCAGGGGCCTCTGGCAGACCTGCGGGG GCACCCAGAAGAAGTCAGGAGCCTCTGGCAGACCTGCGGGG < 41bp 0.486134696762415 0.716674545703619 NA NA prediction 0.433349091407239 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66254075 chr11:66254074 nonsynonymous SNV 0.268 0 20 hm7G_associated_SNPs_26293 0 0 1 0 2 DPP3 chr11:66254011 3'AG 66254011 Downstream 64bp 23941 chr11 66254074 66254074 1 + G A UCEC 66254075 + 66254055 66254095 41 GCACCCAGAAGAAGTCAGGGGCCTCTGGCAGACCTGCGGGG GCACCCAGAAGAAGTCAGGAGCCTCTGGCAGACCTGCGGGG < 41bp 0.486134696762415 0.716674545703619 NA NA prediction 0.433349091407239 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66254075 chr11:66254074 nonsynonymous SNV 0.268 0 20 hm7G_associated_SNPs_26293 0 0 1 0 2 DPP3 chr11:66254148 5'GT 66254148 Upstream 75bp 23942 chr11 57313706 57313706 1 + G T rs202247646 57313707 + 57313687 57313727 41 CACCCCTCTCCCCTCACAGGGCAGCTTCCGGCCCCACGGCC CACCCCTCTCCCCTCACAGTGCAGCTTCCGGCCCCACGGCC < 41bp 0.365959589731368 0.716673663832843 NA NA prediction 0.433347327665687 Functional Gain - SMTNL1 ENSG00000214872 CDS Human protein_coding chr11:57313707 chr11:57313706 synonymous SNV . 0 20 hm7G_associated_SNPs_26294 0 0 0 0 1 SMTNL1 chr11:57313706 3'AG 57313706 Downstream 1bp 23943 chr12 122669155 122669155 1 + G T LUSC 122669156 + 122669136 122669176 41 TGAGCCCCGGAGAGGAGACGGTGGAGGCCCTGCTGGGCCTG TGAGCCCCGGAGAGGAGACTGTGGAGGCCCTGCTGGGCCTG < 41bp 0.370703199292873 0.71667342069391 NA NA prediction 0.433346841387819 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122669156 chr12:122669155 synonymous SNV . 0 20 hm7G_associated_SNPs_26295 0 0 0 0 1 LRRC43 chr12:122669066 3'AG 122669066 Downstream 90bp 23944 chr11 89883752 89883752 1 + G T LUAD 89883753 + 89883733 89883773 41 GATTGTTATTGCAAGATATGGAAAAATCTTCAGAGGAAATA GATTGTTATTGCAAGATATTGAAAAATCTTCAGAGGAAATA < 41bp 0.392714717179745 0.71667042899664 NA NA prediction 0.43334085799328 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89883753 chr11:89883752 stopgain 0.992 1 20 hm7G_associated_SNPs_26296 0 0 1 0 1 NAALAD2 chr11:89883775 5'GT 89883775 Upstream 24bp 23945 chr21 33825668 33825668 1 + G T STAD 33825669 + 33825649 33825689 41 ACCACCTATGCCTGTGATGGGGACTATTTGAATCTACAGTG ACCACCTATGCCTGTGATGTGGACTATTTGAATCTACAGTG < 41bp 0.556755581960626 0.773423149614017 NA NA prediction 0.433335135306782 Functional Gain - EVA1C ENSG00000166979 CDS Human protein_coding chr21:33825669 chr21:33825668 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26297 0 0 0 0 1 EVA1C chr21:33825620 3'AG 33825620 Downstream 49bp 23946 chr19 45303694 45303694 1 + G A rs73572010 45303695 + 45303675 45303715 41 GACCCCAGGACCCTGCCCCGGCCTGAAGGCCAGGTGAGTCC GACCCCAGGACCCTGCCCCAGCCTGAAGGCCAGGTGAGTCC < 41bp 0.507052267167469 0.723718938783869 NA NA prediction 0.4333333432328 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303695 chr19:45303694 synonymous SNV . 0 20 hm7G_associated_SNPs_26298 0 0 0 0 2 CBLC chr19:45303638 3'AG 45303638 Downstream 57bp 23947 chr19 45303694 45303694 1 + G A rs73572010 45303695 + 45303675 45303715 41 GACCCCAGGACCCTGCCCCGGCCTGAAGGCCAGGTGAGTCC GACCCCAGGACCCTGCCCCAGCCTGAAGGCCAGGTGAGTCC < 41bp 0.507052267167469 0.723718938783869 NA NA prediction 0.4333333432328 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303695 chr19:45303694 synonymous SNV . 0 20 hm7G_associated_SNPs_26298 0 0 0 0 2 CBLC chr19:45303707 5'GT 45303707 Upstream 14bp 23948 chr10 134008372 134008372 1 + G A LUSC 134008373 + 134008353 134008393 41 CCACGTCTTCCCCGACACGGGTGTGAGCCTGCTGGCGGCCT CCACGTCTTCCCCGACACGAGTGTGAGCCTGCTGGCGGCCT < 41bp 0.496822263536418 0.716659600427401 NA NA prediction 0.433319200854802 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134008373 chr10:134008372 nonsynonymous SNV 0.107 2 20 hm7G_associated_SNPs_26300 0 0 0 0 1 DPYSL4 chr10:134008349 3'AG 134008349 Downstream 24bp 23949 chr1 22924682 22924682 1 + G A UCEC 22924683 + 22924663 22924703 41 GACTGAGTACATGGAGAACGGCTCTCTGGACACCTTCCTGA GACTGAGTACATGGAGAACAGCTCTCTGGACACCTTCCTGA < 41bp 0.541936137957554 0.758581660319039 NA NA prediction 0.433291044722971 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924683 chr1:22924682 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_26301 0 0 1 0 1 EPHA8 chr1:22924644 3'AG 22924644 Downstream 39bp 23950 chr15 75182905 75182905 1 + G T SARC 75182906 + 75182886 75182926 41 CGGTGCAGCAGTATGCCTGGGGGAAGATGGGTTCCAACAGC CGGTGCAGCAGTATGCCTGTGGGAAGATGGGTTCCAACAGC < 41bp 0.364791916546549 0.716636648703844 NA NA prediction 0.433273297407688 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75182906 chr15:75182905 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_26304 0 0 1 0 2 MPI chr15:75182868 3'AG 75182868 Downstream 38bp 23951 chr15 75182905 75182905 1 + G T SARC 75182906 + 75182886 75182926 41 CGGTGCAGCAGTATGCCTGGGGGAAGATGGGTTCCAACAGC CGGTGCAGCAGTATGCCTGTGGGAAGATGGGTTCCAACAGC < 41bp 0.364791916546549 0.716636648703844 NA NA prediction 0.433273297407688 Functional Gain - MPI ENSG00000178802 CDS Human protein_coding chr15:75182906 chr15:75182905 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_26304 0 0 1 0 2 MPI chr15:75182995 5'GT 75182995 Upstream 91bp 23952 chr19 50149453 50149453 1 + G A UCEC 50149454 + 50149434 50149474 41 AATCAGGGGGCACTGACACGGCTACTGTGAGTAAGAAGAGG AATCAGGGGGCACTGACACAGCTACTGTGAGTAAGAAGAGG < 41bp 0.543684483740163 0.760320607330841 NA NA prediction 0.433272247181356 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50149454 chr19:50149453 synonymous SNV . 0 20 hm7G_associated_SNPs_26305 0 0 1 0 2 SCAF1 chr19:50149365 3'AG 50149365 Downstream 89bp 23953 chr19 50149453 50149453 1 + G A UCEC 50149454 + 50149434 50149474 41 AATCAGGGGGCACTGACACGGCTACTGTGAGTAAGAAGAGG AATCAGGGGGCACTGACACAGCTACTGTGAGTAAGAAGAGG < 41bp 0.543684483740163 0.760320607330841 NA NA prediction 0.433272247181356 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50149454 chr19:50149453 synonymous SNV . 0 20 hm7G_associated_SNPs_26305 0 0 1 0 2 SCAF1 chr19:50149459 5'GT 50149459 Upstream 7bp 23954 chr1 77510209 77510209 1 + G T HNSC 77510210 + 77510190 77510230 41 ACCTGCATCTCCTGAGCCAGGTGCTGCCCCGGCTGAAGGCC ACCTGCATCTCCTGAGCCATGTGCTGCCCCGGCTGAAGGCC < 41bp 0.368566109026791 0.716634520772235 NA NA prediction 0.43326904154447 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510210 chr1:77510209 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26306 0 0 0 1 1 ST6GALNAC5 chr1:77510298 5'GT 77510298 Upstream 90bp 23955 chr14 65197579 65197579 1 + G A rs149822835 65197580 + 65197560 65197600 41 GCCAAGTTCTTTCGGGACCGGCAGGAGCTGCTACAGCACTC GCCAAGTTCTTTCGGGACCAGCAGGAGCTGCTACAGCACTC < 41bp 0.502054086831996 0.718687131451534 NA NA prediction 0.433266089239076 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197580 chr14:65197579 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_26307 0 0 0 0 2 PLEKHG3 chr14:65197517 3'AG 65197517 Downstream 63bp 23956 chr14 65197579 65197579 1 + G A rs149822835 65197580 + 65197560 65197600 41 GCCAAGTTCTTTCGGGACCGGCAGGAGCTGCTACAGCACTC GCCAAGTTCTTTCGGGACCAGCAGGAGCTGCTACAGCACTC < 41bp 0.502054086831996 0.718687131451534 NA NA prediction 0.433266089239076 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65197580 chr14:65197579 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_26307 0 0 0 0 2 PLEKHG3 chr14:65197667 5'GT 65197667 Upstream 89bp 23957 chr16 72139957 72139957 1 + G T UCEC 72139958 + 72139938 72139978 41 AGATCTATCCCATTAGCCAGGCCAATGCCAACCAGCGGTCA AGATCTATCCCATTAGCCATGCCAATGCCAACCAGCGGTCA < 41bp 0.689893077768277 0.90652447692863 NA NA prediction 0.433262798320706 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139958 chr16:72139957 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26308 0 0 1 0 2 DHX38 chr16:72139904 3'AG 72139904 Downstream 54bp 23958 chr16 72139957 72139957 1 + G T UCEC 72139958 + 72139938 72139978 41 AGATCTATCCCATTAGCCAGGCCAATGCCAACCAGCGGTCA AGATCTATCCCATTAGCCATGCCAATGCCAACCAGCGGTCA < 41bp 0.689893077768277 0.90652447692863 NA NA prediction 0.433262798320706 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139958 chr16:72139957 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26308 0 0 1 0 2 DHX38 chr16:72140016 5'GT 72140016 Upstream 60bp 23959 chr8 22138988 22138988 1 + G T LUAD 22138989 + 22138969 22139009 41 TCCAAAAGTGTTGGCGGCTGGGGACAGCAAGATGGCAGAGA TCCAAAAGTGTTGGCGGCTTGGGACAGCAAGATGGCAGAGA < 41bp 0.691190794159397 0.907821235083698 NA NA prediction 0.433260881848603 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22138989 chr8:22138988 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_26309 0 0 0 0 2 PIWIL2 chr8:22138890 3'AG 22138890 Downstream 99bp 23960 chr8 22138988 22138988 1 + G T LUAD 22138989 + 22138969 22139009 41 TCCAAAAGTGTTGGCGGCTGGGGACAGCAAGATGGCAGAGA TCCAAAAGTGTTGGCGGCTTGGGACAGCAAGATGGCAGAGA < 41bp 0.691190794159397 0.907821235083698 NA NA prediction 0.433260881848603 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22138989 chr8:22138988 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_26309 0 0 0 0 2 PIWIL2 chr8:22139028 5'GT 22139028 Upstream 41bp 23961 chr10 17726691 17726691 1 + G T LUSC 17726692 + 17726672 17726712 41 AGACCTAAGGATTGTCTTCGGTCTATTATGAGAAGAGTGAA AGACCTAAGGATTGTCTTCTGTCTATTATGAGAAGAGTGAA < 41bp 0.400302091175526 0.716617084533547 NA NA prediction 0.433234169067094 Functional Gain - STAM ENSG00000136738 CDS Human protein_coding chr10:17726692 chr10:17726691 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26310 0 0 1 0 2 STAM chr10:17726674 3'AG 17726674 Downstream 18bp 23962 chr10 17726691 17726691 1 + G T LUSC 17726692 + 17726672 17726712 41 AGACCTAAGGATTGTCTTCGGTCTATTATGAGAAGAGTGAA AGACCTAAGGATTGTCTTCTGTCTATTATGAGAAGAGTGAA < 41bp 0.400302091175526 0.716617084533547 NA NA prediction 0.433234169067094 Functional Gain - STAM ENSG00000136738 CDS Human protein_coding chr10:17726692 chr10:17726691 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26310 0 0 1 0 2 STAM chr10:17726749 5'GT 17726749 Upstream 59bp 23963 chr18 12274254 12274254 1 + G T UCEC 12274255 + 12274235 12274275 41 CTACGACATCCGGTGCACGGGACTCAAGGGCCTGCTGAGGT CTACGACATCCGGTGCACGTGACTCAAGGGCCTGCTGAGGT < 41bp 0.381791707165705 0.716616713667073 NA NA prediction 0.433233427334145 Functional Gain - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12274255 chr18:12274254 stopgain 0.014 0 20 hm7G_associated_SNPs_26311 0 0 0 3 1 CIDEA chr18:12274273 5'GT 12274273 Upstream 20bp 23964 chr5 137682431 137682431 1 + G T THCA 137682432 + 137682412 137682452 41 TGTCTCCAAGAAACAGCCCGGGAAGGCAGCAGCATCTCTCC TGTCTCCAAGAAACAGCCCTGGAAGGCAGCAGCATCTCTCC < 41bp 0.677390653328121 0.894007298217888 NA NA prediction 0.433233289779534 Functional Gain - FAM53C ENSG00000120709 CDS Human protein_coding chr5:137682432 chr5:137682431 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_26312 0 0 1 0 1 FAM53C chr5:137682391 3'AG 137682391 Downstream 41bp 23965 chr5 55195937 55195937 1 + G T PRAD 55195938 + 55195918 55195958 41 TCTCCAGTGGCCACCCTGAGGATTCCAGCTATTCAAGAAAA TCTCCAGTGGCCACCCTGATGATTCCAGCTATTCAAGAAAA < 41bp 0.382178615904801 0.716609491905963 NA NA prediction 0.433218983811925 Functional Gain - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55195938 chr5:55195937 nonsynonymous SNV 0.906 2 20 hm7G_associated_SNPs_26313 0 0 0 0 1 IL31RA chr5:55195960 5'GT 55195960 Upstream 24bp 23966 chr14 105453146 105453146 1 + G T UCEC 105453147 + 105453127 105453167 41 GTTCTCACCAACCATGCCAGGGTGGACCTTGGGTGACAGGA GTTCTCACCAACCATGCCATGGTGGACCTTGGGTGACAGGA < 41bp 0.389929183023797 0.716593738562034 NA NA prediction 0.433187477124067 Functional Gain - C14orf79 ENSG00000140104 CDS Human protein_coding chr14:105453147 chr14:105453146 nonsynonymous SNV 0.520 2 20 hm7G_associated_SNPs_26319 0 0 1 0 1 C14orf79 chr14:105453191 5'GT 105453191 Upstream 46bp 23967 chr4 656917 656917 1 + G A STAD 656918 + 656898 656938 41 CCCCTTGGCTAAGCTCCACGGCTCCTCGATTTTGGAGCGGC CCCCTTGGCTAAGCTCCACAGCTCCTCGATTTTGGAGCGGC < 41bp 0.525170710007078 0.74176094455373 NA NA prediction 0.433180469093304 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:656918 chr4:656917 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_26320 0 0 0 0 2 PDE6B chr4:656889 3'AG 656889 Downstream 29bp 23968 chr4 656917 656917 1 + G A STAD 656918 + 656898 656938 41 CCCCTTGGCTAAGCTCCACGGCTCCTCGATTTTGGAGCGGC CCCCTTGGCTAAGCTCCACAGCTCCTCGATTTTGGAGCGGC < 41bp 0.525170710007078 0.74176094455373 NA NA prediction 0.433180469093304 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:656918 chr4:656917 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_26320 0 0 0 0 2 PDE6B chr4:656976 5'GT 656976 Upstream 60bp 23969 chr16 4744975 4744975 1 + G A COAD 4744976 + 4744956 4744996 41 CAGGTGCTGGGCCTCGTGCGGGTCCCGCTGTACACCCAGAA CAGGTGCTGGGCCTCGTGCAGGTCCCGCTGTACACCCAGAA < 41bp 0.541348774591499 0.757938276030485 NA NA prediction 0.433179002877973 Functional Gain - NUDT16L1 ENSG00000168101 CDS Human protein_coding chr16:4744976 chr16:4744975 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_26321 0 0 1 0 1 NUDT16L1 chr16:4744959 3'AG 4744959 Downstream 17bp 23970 chr5 6751226 6751226 1 + C T UCEC 6751227 + 6751207 6751247 41 CGCCAGCTCCTCTCATGGCCGGCTTACCCACCGCCTTGCCA CGCCAGCTCCTCTCATGGCTGGCTTACCCACCGCCTTGCCA < 41bp 0.503754608929847 0.720343628242603 NA NA prediction 0.433178038625512 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6751227 chr5:6751226 synonymous SNV . 0 20 hm7G_associated_SNPs_26322 0 0 1 0 2 PAPD7 chr5:6751152 3'AG 6751152 Downstream 75bp 23971 chr5 6751226 6751226 1 + C T UCEC 6751227 + 6751207 6751247 41 CGCCAGCTCCTCTCATGGCCGGCTTACCCACCGCCTTGCCA CGCCAGCTCCTCTCATGGCTGGCTTACCCACCGCCTTGCCA < 41bp 0.503754608929847 0.720343628242603 NA NA prediction 0.433178038625512 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6751227 chr5:6751226 synonymous SNV . 0 20 hm7G_associated_SNPs_26322 0 0 1 0 2 PAPD7 chr5:6751310 5'GT 6751310 Upstream 85bp 23972 chr1 25667024 25667024 1 + G T LIHC 25667025 + 25667005 25667045 41 TGCTCAGAATGCATTGACTGGGGGGAAAAGCGCAATACTAT TGCTCAGAATGCATTGACTTGGGGGAAAAGCGCAATACTAT < 41bp 0.678968193826516 0.895547810575823 NA NA prediction 0.433159233498614 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25667025 chr1:25667024 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_26326 0 0 1 0 2 TMEM50A chr1:25666965 3'AG 25666965 Downstream 60bp 23973 chr1 25667024 25667024 1 + G T LIHC 25667025 + 25667005 25667045 41 TGCTCAGAATGCATTGACTGGGGGGAAAAGCGCAATACTAT TGCTCAGAATGCATTGACTTGGGGGAAAAGCGCAATACTAT < 41bp 0.678968193826516 0.895547810575823 NA NA prediction 0.433159233498614 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25667025 chr1:25667024 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_26326 0 0 1 0 2 TMEM50A chr1:25667070 5'GT 25667070 Upstream 47bp 23974 chrX 152821817 152821817 1 + G T LUSC 152821818 + 152821798 152821838 41 GAGCGGCTGGACAAGGTGTGGCCCAAGCTGAGGGTGCTGGC GAGCGGCTGGACAAGGTGTTGCCCAAGCTGAGGGTGCTGGC < 41bp 0.69458928578784 0.911165707209609 NA NA prediction 0.433152842843537 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152821818 chrX:152821817 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26327 0 0 0 0 2 ATP2B3 chrX:152821789 3'AG 152821789 Downstream 29bp 23975 chrX 152821817 152821817 1 + G T LUSC 152821818 + 152821798 152821838 41 GAGCGGCTGGACAAGGTGTGGCCCAAGCTGAGGGTGCTGGC GAGCGGCTGGACAAGGTGTTGCCCAAGCTGAGGGTGCTGGC < 41bp 0.69458928578784 0.911165707209609 NA NA prediction 0.433152842843537 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152821818 chrX:152821817 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26327 0 0 0 0 2 ATP2B3 chrX:152821876 5'GT 152821876 Upstream 60bp 23976 chr16 57394460 57394460 1 + G T STAD 57394461 + 57394441 57394481 41 ACCTCAGACTCCTGCCCGAGGCCTGGCGTGGTGTGAGTAGG ACCTCAGACTCCTGCCCGATGCCTGGCGTGGTGTGAGTAGG < 41bp 0.689118113311189 0.905689044833294 NA NA prediction 0.433141863044209 Functional Gain - CCL22 ENSG00000102962 CDS Human protein_coding chr16:57394461 chr16:57394460 nonsynonymous SNV 0.407 3 20 hm7G_associated_SNPs_26329 0 0 0 0 1 CCL22 chr16:57394472 5'GT 57394472 Upstream 13bp 23977 chr19 3902505 3902505 1 + G A rs147031440 3902506 + 3902486 3902526 41 CCACTCCCAGAAGAGACGGGGGTGGAACTGCTTGGCAGCCC CCACTCCCAGAAGAGACGGAGGTGGAACTGCTTGGCAGCCC < 41bp 0.526007947614406 0.742570141738921 NA NA prediction 0.433124388249029 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3902506 chr19:3902505 nonsynonymous SNV 0.042 1 20 hm7G_associated_SNPs_26331 0 0 0 0 2 ATCAY chr19:3902485 3'AG 3902485 Downstream 21bp 23978 chr19 3902505 3902505 1 + G A rs147031440 3902506 + 3902486 3902526 41 CCACTCCCAGAAGAGACGGGGGTGGAACTGCTTGGCAGCCC CCACTCCCAGAAGAGACGGAGGTGGAACTGCTTGGCAGCCC < 41bp 0.526007947614406 0.742570141738921 NA NA prediction 0.433124388249029 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3902506 chr19:3902505 nonsynonymous SNV 0.042 1 20 hm7G_associated_SNPs_26331 0 0 0 0 2 ATCAY chr19:3902543 5'GT 3902543 Upstream 39bp 23979 chr1 203472098 203472098 1 + G A rs77566947 203472099 + 203472079 203472119 41 ACCTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAGCCTG ACCTGCTGGATTCTATCCCAGGGCCTTTGCCCCTGAGCCTG < 41bp 0.521163357378826 0.737724866272726 NA NA prediction 0.4331230177878 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472099 chr1:203472098 synonymous SNV . 0 20 hm7G_associated_SNPs_26332 0 0 0 0 2 OPTC chr1:203472042 3'AG 203472042 Downstream 57bp 23980 chr1 203472098 203472098 1 + G A rs77566947 203472099 + 203472079 203472119 41 ACCTGCTGGATTCTATCCCGGGGCCTTTGCCCCTGAGCCTG ACCTGCTGGATTCTATCCCAGGGCCTTTGCCCCTGAGCCTG < 41bp 0.521163357378826 0.737724866272726 NA NA prediction 0.4331230177878 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203472099 chr1:203472098 synonymous SNV . 0 20 hm7G_associated_SNPs_26332 0 0 0 0 2 OPTC chr1:203472137 5'GT 203472137 Upstream 40bp 23981 chr1 32740366 32740366 1 + G A rs145088108 32740367 + 32740347 32740387 41 CGAAATGGCTCTGAGGTGCGGGACCCACTGGTTACCTACGA CGAAATGGCTCTGAGGTGCAGGACCCACTGGTTACCTACGA < 41bp 0.499426407863891 0.716555138819217 NA NA prediction 0.433110277638433 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32740367 chr1:32740366 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_26335 0 0 0 0 2 LCK chr1:32740338 3'AG 32740338 Downstream 29bp 23982 chr1 32740366 32740366 1 + G A rs145088108 32740367 + 32740347 32740387 41 CGAAATGGCTCTGAGGTGCGGGACCCACTGGTTACCTACGA CGAAATGGCTCTGAGGTGCAGGACCCACTGGTTACCTACGA < 41bp 0.499426407863891 0.716555138819217 NA NA prediction 0.433110277638433 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32740367 chr1:32740366 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_26335 0 0 0 0 2 LCK chr1:32740419 5'GT 32740419 Upstream 54bp 23983 chr2 242683097 242683097 1 + G A HNSC 242683098 + 242683078 242683118 41 AGCCGGTATGTGGAGGAACGGGACTTCATCATGCCGCTGGA AGCCGGTATGTGGAGGAACAGGACTTCATCATGCCGCTGGA < 41bp 0.514892890437908 0.73144158917855 NA NA prediction 0.433097397481286 Functional Gain - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242683098 chr2:242683097 nonsynonymous SNV 0.074 2 20 hm7G_associated_SNPs_26336 0 0 1 0 1 D2HGDH chr2:242683037 3'AG 242683037 Downstream 61bp 23984 chr16 70400725 70400725 1 + C T UCEC 70400726 + 70400706 70400746 41 AGGCCTTGTGTAACCTCTACGGGGCCATCACCATTGCTCAA AGGCCTTGTGTAACCTCTATGGGGCCATCACCATTGCTCAA < 41bp 0.500423210906256 0.716971611118647 NA NA prediction 0.433096800424781 Functional Gain - DDX19A ENSG00000168872 CDS Human protein_coding chr16:70400726 chr16:70400725 synonymous SNV . 0 20 hm7G_associated_SNPs_26337 0 0 0 0 1 DDX19A chr16:70400764 5'GT 70400764 Upstream 40bp 23985 chr7 36445877 36445877 1 + C T CESC 36445878 + 36445858 36445898 41 CCTCTGCTTTCAAATGCCTCGGCAACTCCAGTTGGCAGAAG CCTCTGCTTTCAAATGCCTTGGCAACTCCAGTTGGCAGAAG < 41bp 0.501403072668885 0.717945654157475 NA NA prediction 0.43308516297718 Functional Gain - ANLN ENSG00000011426 CDS Human protein_coding chr7:36445878 chr7:36445877 nonsynonymous SNV 0.122 1 20 hm7G_associated_SNPs_26338 0 0 1 0 1 ANLN chr7:36445790 3'AG 36445790 Downstream 88bp 23986 chr2 191231492 191231492 1 + G T STAD 191231493 + 191231473 191231513 41 TCTTAGCAAAGTCCTCAATGGTAACAAGGTGGCATCTGAAG TCTTAGCAAAGTCCTCAATTGTAACAAGGTGGCATCTGAAG < 41bp 0.687440902538446 0.903974078718369 NA NA prediction 0.433066352359845 Functional Gain - INPP1 ENSG00000151689 CDS Human protein_coding chr2:191231493 chr2:191231492 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_26339 0 0 0 0 1 INPP1 chr2:191231421 3'AG 191231421 Downstream 72bp 23987 chr1 153701125 153701125 1 + G T COAD 153701126 + 153701106 153701146 41 CAGCCATGGAGTTGCAGAAGGGAAAAGGGGCGGCAGCAGCA CAGCCATGGAGTTGCAGAATGGAAAAGGGGCGGCAGCAGCA < 41bp 0.665246530638893 0.881772654681568 NA NA prediction 0.433052248085349 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153701126 chr1:153701125 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26341 0 0 0 0 1 INTS3 chr1:153701029 3'AG 153701029 Downstream 97bp 23988 chr11 68675722 68675722 1 + C T rs144401213 68675723 + 68675703 68675743 41 TGGCCTTTGATGAGTCCCACGATTTCCAGTTGAGCTTGGAC TGGCCTTTGATGAGTCCCATGATTTCCAGTTGAGCTTGGAC < 41bp 0.503209240418003 0.719730534359179 NA NA prediction 0.433042587882352 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68675723 chr11:68675722 synonymous SNV . 0 20 hm7G_associated_SNPs_26344 2 0 1 0 1 IGHMBP2 chr11:68675805 5'GT 68675805 Upstream 84bp 23989 chr17 7416194 7416194 1 + G A SKCM 7416195 + 7416175 7416215 41 TGCCTGGTCTCCCACACCGGGCTCCCCGGGGTCCCCAGGTC TGCCTGGTCTCCCACACCGAGCTCCCCGGGGTCCCCAGGTC < 41bp 0.528340927934801 0.744858090272662 NA NA prediction 0.433034324675722 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7416195 chr17:7416194 nonsynonymous SNV 0.095 1 20 hm7G_associated_SNPs_26345 0 0 1 0 1 POLR2A chr17:7416242 5'GT 7416242 Upstream 49bp 23990 chr7 76062905 76062905 1 + G A READ 76062906 + 76062886 76062926 41 TGTTTGTGGACCACTGCGTGGCCACACCGACACCAGACCAG TGTTTGTGGACCACTGCGTAGCCACACCGACACCAGACCAG < 41bp 0.489186373687522 0.716512275199449 NA NA prediction 0.433024550398898 Functional Gain - ZP3 ENSG00000188372 CDS Human protein_coding chr7:76062906 chr7:76062905 synonymous SNV . 0 20 hm7G_associated_SNPs_26347 0 0 0 0 1 ZP3 chr7:76062964 5'GT 76062964 Upstream 60bp 23991 chr5 54456219 54456219 1 + G T UCEC 54456220 + 54456200 54456240 41 TTCTCTGGAAAAGTATAAAGGCAAAGTAAGTTGCATCATCT TTCTCTGGAAAAGTATAAATGCAAAGTAAGTTGCATCATCT < 41bp 0.659331922977699 0.875843180385414 NA NA prediction 0.433022514815431 Functional Gain - GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456220 chr5:54456219 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26348 0 0 1 0 2 GPX8 chr5:54456158 3'AG 54456158 Downstream 62bp 23992 chr5 54456219 54456219 1 + G T UCEC 54456220 + 54456200 54456240 41 TTCTCTGGAAAAGTATAAAGGCAAAGTAAGTTGCATCATCT TTCTCTGGAAAAGTATAAATGCAAAGTAAGTTGCATCATCT < 41bp 0.659331922977699 0.875843180385414 NA NA prediction 0.433022514815431 Functional Gain - GPX8 ENSG00000164294 CDS Human protein_coding chr5:54456220 chr5:54456219 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26348 0 0 1 0 2 GPX8 chr5:54456224 5'GT 54456224 Upstream 6bp 23993 chr2 88387418 88387418 1 + G T LUAD 88387419 + 88387399 88387439 41 GTGGCGGGTGGAGAGAGAAGGCACCGGGCTCACGGAGGGCT GTGGCGGGTGGAGAGAGAATGCACCGGGCTCACGGAGGGCT < 41bp 0.686369525140216 0.902875216845016 NA NA prediction 0.4330113834096 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88387419 chr2:88387418 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26350 0 0 0 0 1 SMYD1 chr2:88387381 3'AG 88387381 Downstream 38bp 23994 chr9 138657034 138657034 1 + G A GBM 138657035 + 138657015 138657055 41 GAGTTCTACGCCCACCCCCGGCTCCAGGTGAGGCCCCTTAC GAGTTCTACGCCCACCCCCAGCTCCAGGTGAGGCCCCTTAC < 41bp 0.524221078532157 0.740720284723302 NA NA prediction 0.432998412382291 Functional Gain - KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138657035 chr9:138657034 nonsynonymous SNV 0.959 0 20 hm7G_associated_SNPs_26352 2 0 0 0 1 KCNT1 chr9:138657041 5'GT 138657041 Upstream 8bp 23995 chr19 3909578 3909578 1 + G T COAD 3909579 + 3909559 3909599 41 GCGGAGGATGCCTGGAATCGGCTGGCTGAAGAAGTGCTACC GCGGAGGATGCCTGGAATCTGCTGGCTGAAGAAGTGCTACC < 41bp 0.691646619687198 0.908141019918269 NA NA prediction 0.432988800462143 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3909579 chr19:3909578 nonsynonymous SNV 0.923 4 20 hm7G_associated_SNPs_26353 0 0 0 0 1 ATCAY chr19:3909615 5'GT 3909615 Upstream 38bp 23996 chr1 248028152 248028152 1 + G A SKCM 248028153 + 248028133 248028173 41 CTGCGGGAGAGCAAGAGCCGGCTGGTCCAGCAGAGCAAGGC CTGCGGGAGAGCAAGAGCCAGCTGGTCCAGCAGAGCAAGGC < 41bp 0.497408476601444 0.716486879176255 NA NA prediction 0.43297375835251 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248028153 chr1:248028152 nonsynonymous SNV 0.077 0 20 hm7G_associated_SNPs_26355 0 0 1 0 1 TRIM58 chr1:248028237 5'GT 248028237 Upstream 86bp 23997 chr17 37901701 37901701 1 + G A SKCM 37901702 + 37901682 37901722 41 CCTCAGATAATACCCTGGTGGCCATGGACTTCTCTGGCCAT CCTCAGATAATACCCTGGTAGCCATGGACTTCTCTGGCCAT < 41bp 0.50905672449589 0.725539345599598 NA NA prediction 0.432965242207416 Functional Gain - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37901702 chr17:37901701 synonymous SNV . 0 20 hm7G_associated_SNPs_26357 0 0 1 0 1 GRB7 chr17:37901675 3'AG 37901675 Downstream 27bp 23998 chr7 99957010 99957010 1 + G A UCEC 99957011 + 99956991 99957031 41 CAGCACAACCACCATAGCCGGCCTCAGGGTCACAGAAAGCA CAGCACAACCACCATAGCCAGCCTCAGGGTCACAGAAAGCA < 41bp 0.494365993986949 0.716480752443634 NA NA prediction 0.432961504887268 Functional Gain - PILRB ENSG00000121716 CDS Human protein_coding chr7:99957011 chr7:99957010 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_26358 0 0 1 0 1 PILRB chr7:99956960 3'AG 99956960 Downstream 51bp 23999 chr10 72298704 72298704 1 + G A UCEC 72298705 + 72298685 72298725 41 CTGTCAGAGAGATGGATGTGGCCAACTTCCGGCGGGTGCCC CTGTCAGAGAGATGGATGTAGCCAACTTCCGGCGGGTGCCC < 41bp 0.486263605610672 0.716479658522826 NA NA prediction 0.432959317045652 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72298705 chr10:72298704 synonymous SNV . 0 20 hm7G_associated_SNPs_26359 0 0 0 0 2 PALD1 chr10:72298648 3'AG 72298648 Downstream 57bp 24000 chr10 72298704 72298704 1 + G A UCEC 72298705 + 72298685 72298725 41 CTGTCAGAGAGATGGATGTGGCCAACTTCCGGCGGGTGCCC CTGTCAGAGAGATGGATGTAGCCAACTTCCGGCGGGTGCCC < 41bp 0.486263605610672 0.716479658522826 NA NA prediction 0.432959317045652 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72298705 chr10:72298704 synonymous SNV . 0 20 hm7G_associated_SNPs_26359 0 0 0 0 2 PALD1 chr10:72298764 5'GT 72298764 Upstream 61bp 24001 chr12 56629034 56629034 1 + G A rs114552970 56629035 + 56629015 56629055 41 CTGGGACCTCGTCTACTACGGCCCTTGCTGGGCTTCCTGGG CTGGGACCTCGTCTACTACAGCCCTTGCTGGGCTTCCTGGG < 41bp 0.557201645857092 0.773680830941461 NA NA prediction 0.432958370168739 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629035 chr12:56629034 nonsynonymous SNV 0.544 0 20 hm7G_associated_SNPs_26360 0 0 0 0 2 SLC39A5 chr12:56628941 3'AG 56628941 Downstream 94bp 24002 chr12 56629034 56629034 1 + G A rs114552970 56629035 + 56629015 56629055 41 CTGGGACCTCGTCTACTACGGCCCTTGCTGGGCTTCCTGGG CTGGGACCTCGTCTACTACAGCCCTTGCTGGGCTTCCTGGG < 41bp 0.557201645857092 0.773680830941461 NA NA prediction 0.432958370168739 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56629035 chr12:56629034 nonsynonymous SNV 0.544 0 20 hm7G_associated_SNPs_26360 0 0 0 0 2 SLC39A5 chr12:56629110 5'GT 56629110 Upstream 77bp 24003 chr10 72324250 72324250 1 + G A SKCM 72324251 + 72324231 72324271 41 AAGGCCGACTCCTGGCAGAGGCCCTTCAGCACCTGGATGCA AAGGCCGACTCCTGGCAGAAGCCCTTCAGCACCTGGATGCA < 41bp 0.503563992465283 0.720034476310659 NA NA prediction 0.432940967690751 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72324251 chr10:72324250 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_26362 0 0 1 0 1 PALD1 chr10:72324275 5'GT 72324275 Upstream 26bp 24004 chr19 36579993 36579993 1 + C T COAD 36579994 + 36579974 36580014 41 TGACAAGAGCATCTACTTTCGCAGTGCCCAGCAGGTAGGGT TGACAAGAGCATCTACTTTTGCAGTGCCCAGCAGGTAGGGT < 41bp 0.505016761398213 0.721484377513622 NA NA prediction 0.432935232230817 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579994 chr19:36579993 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26363 0 0 1 0 3 WDR62 chr19:36579940 3'AG 36579940 Downstream 54bp 24005 chr19 36579993 36579993 1 + C T COAD 36579994 + 36579974 36580014 41 TGACAAGAGCATCTACTTTCGCAGTGCCCAGCAGGTAGGGT TGACAAGAGCATCTACTTTTGCAGTGCCCAGCAGGTAGGGT < 41bp 0.505016761398213 0.721484377513622 NA NA prediction 0.432935232230817 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579994 chr19:36579993 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26363 0 0 1 0 3 WDR62 chr19:36580007 5'GT 36580007 Upstream 15bp 24006 chr19 36579993 36579993 1 + C T COAD 36579994 + 36579974 36580014 41 TGACAAGAGCATCTACTTTCGCAGTGCCCAGCAGGTAGGGT TGACAAGAGCATCTACTTTTGCAGTGCCCAGCAGGTAGGGT < 41bp 0.505016761398213 0.721484377513622 NA NA prediction 0.432935232230817 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36579994 chr19:36579993 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26363 0 0 1 0 3 WDR62 chr19:36580087 5'GT 36580087 Upstream 95bp 24007 chr17 21081606 21081606 1 + G T UCEC 21081607 + 21081587 21081627 41 CTCTGTGGCCGGAATGGTGGGGCCCTAGAAGAGCTCATCAG CTCTGTGGCCGGAATGGTGTGGCCCTAGAAGAGCTCATCAG < 41bp 0.693150367113068 0.909614208877107 NA NA prediction 0.432927683528078 Functional Gain - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21081607 chr17:21081606 nonsynonymous SNV 0.218 0 20 hm7G_associated_SNPs_26364 0 0 1 0 2 DHRS7B chr17:21081546 3'AG 21081546 Downstream 61bp 24008 chr17 21081606 21081606 1 + G T UCEC 21081607 + 21081587 21081627 41 CTCTGTGGCCGGAATGGTGGGGCCCTAGAAGAGCTCATCAG CTCTGTGGCCGGAATGGTGTGGCCCTAGAAGAGCTCATCAG < 41bp 0.693150367113068 0.909614208877107 NA NA prediction 0.432927683528078 Functional Gain - DHRS7B ENSG00000109016 CDS Human protein_coding chr17:21081607 chr17:21081606 nonsynonymous SNV 0.218 0 20 hm7G_associated_SNPs_26364 0 0 1 0 2 DHRS7B chr17:21081655 5'GT 21081655 Upstream 50bp 24009 chr10 121551401 121551401 1 + G T UCEC 121551402 + 121551382 121551422 41 TTAAGGAAAGTAAAGAGAAGGAGAAGTTGGAGAGGAGATTA TTAAGGAAAGTAAAGAGAATGAGAAGTTGGAGAGGAGATTA < 41bp 0.674575628991214 0.891030840077369 NA NA prediction 0.432910422172311 Functional Gain - INPP5F ENSG00000198825 CDS Human protein_coding chr10:121551402 chr10:121551401 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26367 0 0 0 0 1 INPP5F chr10:121551381 3'AG 121551381 Downstream 21bp 24010 chr5 167835532 167835532 1 + C T THCA 167835533 + 167835513 167835553 41 GCCTTGCCATGTTGAAGGACGGCTTCCGCACTGACAGGGGG GCCTTGCCATGTTGAAGGATGGCTTCCGCACTGACAGGGGG < 41bp 0.501320820730416 0.71776928210768 NA NA prediction 0.432896922754527 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167835533 chr5:167835532 synonymous SNV . 0 20 hm7G_associated_SNPs_26368 0 0 0 0 1 WWC1 chr5:167835512 3'AG 167835512 Downstream 21bp 24011 chr20 60773022 60773022 1 + G A rs138844562 60773023 + 60773003 60773043 41 GGCGCCGTCCTCTACATCCGGGTGAGCCGAGACTGCCGGAC GGCGCCGTCCTCTACATCCAGGTGAGCCGAGACTGCCGGAC < 41bp 0.534552814130346 0.750999853084721 NA NA prediction 0.432894077908749 Functional Gain - MTG2 ENSG00000101181 CDS Human protein_coding chr20:60773023 chr20:60773022 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_26369 0 0 1 0 1 MTG2 chr20:60773023 5'GT 60773023 Upstream 2bp 24012 chr11 46338965 46338965 1 + C T rs77924634 46338966 + 46338946 46338986 41 CCCTCGTGCCCTGCCTTCCCGAGTTCTCCTCCGGCTCCCAG CCCTCGTGCCCTGCCTTCCTGAGTTCTCCTCCGGCTCCCAG < 41bp 0.505549549319268 0.721983338822522 NA NA prediction 0.432867579006507 Functional Gain - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46338966 chr11:46338965 synonymous SNV . 0 20 hm7G_associated_SNPs_26371 0 0 1 0 1 CREB3L1 chr11:46338912 3'AG 46338912 Downstream 54bp 24013 chr19 3527652 3527652 1 + G A COAD 3527653 + 3527633 3527673 41 AAGCTGCTCCGGTCCCCCCGGAAACCCACCCGCAAGATCTC AAGCTGCTCCGGTCCCCCCAGAAACCCACCCGCAAGATCTC < 41bp 0.507924242413799 0.724353250642982 NA NA prediction 0.432858016458366 Functional Gain - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3527653 chr19:3527652 nonsynonymous SNV 0.945 2 20 hm7G_associated_SNPs_26373 0 0 1 0 1 FZR1 chr19:3527629 3'AG 3527629 Downstream 24bp 24014 chr12 132402057 132402057 1 + G A rs200169540 132402058 + 132402038 132402078 41 CGTGGGCTCTCCCCCGAGCGGGAGCACGCCCCCCCAGGGCC CGTGGGCTCTCCCCCGAGCAGGAGCACGCCCCCCCAGGGCC < 41bp 0.491275336061137 0.716428134972813 NA NA prediction 0.432856269945626 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132402058 chr12:132402057 nonsynonymous SNV 0.063 4 20 hm7G_associated_SNPs_26374 0 0 1 0 1 ULK1 chr12:132402099 5'GT 132402099 Upstream 43bp 24015 chr9 97177508 97177508 1 + G T LGG 97177509 + 97177489 97177529 41 TCCTTGAATTCTTTGCGTGGGGCCTGTTGACAACTCCAATG TCCTTGAATTCTTTGCGTGTGGCCTGTTGACAACTCCAATG < 41bp 0.371068754017467 0.716421834236802 NA NA prediction 0.432843668473603 Functional Gain - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97177509 chr9:97177508 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_26376 0 0 1 0 1 MFSD14B chr9:97177535 5'GT 97177535 Upstream 28bp 24016 chr9 140057149 140057149 1 + G A SKCM 140057150 + 140057130 140057170 41 TGGCGGCCTTCCTGGTGCTGGACCGGCCGGAGGAGCGCATC TGGCGGCCTTCCTGGTGCTAGACCGGCCGGAGGAGCGCATC < 41bp 0.507722004845469 0.724138140455067 NA NA prediction 0.432832271219195 Functional Gain - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140057150 chr9:140057149 synonymous SNV . 0 20 hm7G_associated_SNPs_26377 0 0 0 0 1 GRIN1 chr9:140057191 5'GT 140057191 Upstream 43bp 24017 chr21 47660884 47660884 1 + G T THCA 47660885 + 47660865 47660905 41 ACGGTGCATGTGAAGCAATGGTATGGGAAAATTGTTTGCAG ACGGTGCATGTGAAGCAATTGTATGGGAAAATTGTTTGCAG < 41bp 0.400118057548014 0.716405444842729 NA NA prediction 0.432810889685458 Functional Gain - MCM3AP ENSG00000160294 CDS Human other chr21:47660885 chr21:47660884 nonsynonymous SNV 0.037 1 20 hm7G_associated_SNPs_26380 0 0 0 0 1 MCM3AP-AS1;MCM3AP chr21:47660933 5'GT 47660933 Upstream 50bp 24018 chr6 28093420 28093420 1 - C T STAD 28093419 - 28093399 28093439 41 TCTGGCCTCAGCCACTGACGGCAGAGCTCCCACAGCTGGGT TCTGGCCTCAGCCACTGACAGCAGAGCTCCCACAGCTGGGT < 41bp 0.501554830627998 0.717952084137609 NA NA prediction 0.432794507019222 Functional Gain - ZSCAN16 ENSG00000196812 CDS Human protein_coding chr6:28093419 chr6:28093420 nonsynonymous SNV 0.964 1 20 hm7G_associated_SNPs_26381 0 0 1 0 1 ZSCAN16 chr6:28093401 5'GT 28093401 Upstream 20bp 24019 chr5 148699178 148699178 1 + G A COAD 148699179 + 148699159 148699199 41 GGACATGGGTCGCTGGCTCGGGCTGCTGCTGGTGGAGATGG GGACATGGGTCGCTGGCTCAGGCTGCTGCTGGTGGAGATGG < 41bp 0.505965011113414 0.722360739048119 NA NA prediction 0.43279145586941 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148699179 chr5:148699178 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_26382 0 0 0 0 1 AFAP1L1 chr5:148699145 3'AG 148699145 Downstream 34bp 24020 chr21 46910775 46910775 1 + G A UCEC 46910776 + 46910756 46910796 41 AAGGGAGACAGAGGCAGCCGGGGAGAAAAGGTGAGTGTCCC AAGGGAGACAGAGGCAGCCAGGGAGAAAAGGTGAGTGTCCC < 41bp 0.493896878045253 0.716387328088744 NA NA prediction 0.432774656177487 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46910776 chr21:46910775 nonsynonymous SNV 0.092 1 20 hm7G_associated_SNPs_26384 0 0 1 0 2 COL18A1 chr21:46910750 3'AG 46910750 Downstream 26bp 24021 chr21 46910775 46910775 1 + G A UCEC 46910776 + 46910756 46910796 41 AAGGGAGACAGAGGCAGCCGGGGAGAAAAGGTGAGTGTCCC AAGGGAGACAGAGGCAGCCAGGGAGAAAAGGTGAGTGTCCC < 41bp 0.493896878045253 0.716387328088744 NA NA prediction 0.432774656177487 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46910776 chr21:46910775 nonsynonymous SNV 0.092 1 20 hm7G_associated_SNPs_26384 0 0 1 0 2 COL18A1 chr21:46910785 5'GT 46910785 Upstream 11bp 24022 chr21 33340634 33340634 1 + C T STAD 33340635 + 33340615 33340655 41 AATATTCAGCAGGCACTGGCGAATCGCTGGCTTAATGAGAA AATATTCAGCAGGCACTGGTGAATCGCTGGCTTAATGAGAA < 41bp 0.499447601171747 0.716383008101357 NA NA prediction 0.432766016202715 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33340635 chr21:33340634 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26385 0 0 0 0 2 HUNK chr21:33340562 3'AG 33340562 Downstream 73bp 24023 chr21 33340634 33340634 1 + C T STAD 33340635 + 33340615 33340655 41 AATATTCAGCAGGCACTGGCGAATCGCTGGCTTAATGAGAA AATATTCAGCAGGCACTGGTGAATCGCTGGCTTAATGAGAA < 41bp 0.499447601171747 0.716383008101357 NA NA prediction 0.432766016202715 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33340635 chr21:33340634 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26385 0 0 0 0 2 HUNK chr21:33340697 5'GT 33340697 Upstream 64bp 24024 chr21 47419105 47419105 1 + G A UCEC 47419106 + 47419086 47419126 41 GAGGAGTCAAAGGAGCAAAGGGGTACCGGGGTCCCGAGGGC GAGGAGTCAAAGGAGCAAAAGGGTACCGGGGTCCCGAGGGC < 41bp 0.517493599598972 0.733874310862493 NA NA prediction 0.432761422527042 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419106 chr21:47419105 synonymous SNV . 0 20 hm7G_associated_SNPs_26386 0 0 0 0 2 COL6A1 chr21:47419067 3'AG 47419067 Downstream 39bp 24025 chr21 47419105 47419105 1 + G A UCEC 47419106 + 47419086 47419126 41 GAGGAGTCAAAGGAGCAAAGGGGTACCGGGGTCCCGAGGGC GAGGAGTCAAAGGAGCAAAAGGGTACCGGGGTCCCGAGGGC < 41bp 0.517493599598972 0.733874310862493 NA NA prediction 0.432761422527042 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419106 chr21:47419105 synonymous SNV . 0 20 hm7G_associated_SNPs_26386 0 0 0 0 2 COL6A1 chr21:47419132 5'GT 47419132 Upstream 28bp 24026 chr17 30362590 30362590 1 + G T SKCM 30362591 + 30362571 30362611 41 CTTTCTTCTTCAGAGACATGGGAACAACACACATCACACTT CTTTCTTCTTCAGAGACATTGGAACAACACACATCACACTT < 41bp 0.379424462773938 0.716378113006442 NA NA prediction 0.432756226012884 Functional Gain - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30362591 chr17:30362590 nonsynonymous SNV 0.949 0 20 hm7G_associated_SNPs_26387 0 0 1 0 2 LRRC37B chr17:30362584 3'AG 30362584 Downstream 7bp 24027 chr17 30362590 30362590 1 + G T SKCM 30362591 + 30362571 30362611 41 CTTTCTTCTTCAGAGACATGGGAACAACACACATCACACTT CTTTCTTCTTCAGAGACATTGGAACAACACACATCACACTT < 41bp 0.379424462773938 0.716378113006442 NA NA prediction 0.432756226012884 Functional Gain - LRRC37B ENSG00000185158 CDS Human protein_coding chr17:30362591 chr17:30362590 nonsynonymous SNV 0.949 0 20 hm7G_associated_SNPs_26387 0 0 1 0 2 LRRC37B chr17:30362658 5'GT 30362658 Upstream 69bp 24028 chr20 34208851 34208851 1 + G A SKCM 34208852 + 34208832 34208872 41 TCCAGATTCTAAGCAACTGGGGCCACCCCCGTTTCACGTGC TCCAGATTCTAAGCAACTGAGGCCACCCCCGTTTCACGTGC < 41bp 0.517258961428068 0.733628110253113 NA NA prediction 0.432738297650091 Functional Gain - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34208852 chr20:34208851 stopgain 1.000 1 20 hm7G_associated_SNPs_26388 0 0 0 0 1 SPAG4 chr20:34208798 3'AG 34208798 Downstream 54bp 24029 chr9 130984800 130984800 1 + C T UCEC 130984801 + 130984781 130984821 41 AGGGCTCAGGAGATCAGATCGACACCTACGAACTGTCAGGG AGGGCTCAGGAGATCAGATTGACACCTACGAACTGTCAGGG < 41bp 0.505347626475005 0.721716073726052 NA NA prediction 0.432736894502094 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130984801 chr9:130984800 synonymous SNV . 0 20 hm7G_associated_SNPs_26389 0 0 1 0 2 DNM1 chr9:130984740 3'AG 130984740 Downstream 61bp 24030 chr9 130984800 130984800 1 + C T UCEC 130984801 + 130984781 130984821 41 AGGGCTCAGGAGATCAGATCGACACCTACGAACTGTCAGGG AGGGCTCAGGAGATCAGATTGACACCTACGAACTGTCAGGG < 41bp 0.505347626475005 0.721716073726052 NA NA prediction 0.432736894502094 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130984801 chr9:130984800 synonymous SNV . 0 20 hm7G_associated_SNPs_26389 0 0 1 0 2 DNM1 chr9:130984875 5'GT 130984875 Upstream 76bp 24031 chr12 32491758 32491758 1 + G T ESCA 32491759 + 32491739 32491779 41 TGTGATCAGAGCCGTCCCAGGACTTCAGGGGCTTCCTACCT TGTGATCAGAGCCGTCCCATGACTTCAGGGGCTTCCTACCT < 41bp 0.379521888766845 0.716362618260276 NA NA prediction 0.432725236520553 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32491759 chr12:32491758 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26390 0 0 0 0 1 BICD1 chr12:32491720 3'AG 32491720 Downstream 39bp 24032 chr10 13166057 13166057 1 + G T STAD 13166058 + 13166038 13166078 41 TGTTTAAGGAGCTTCAAGAGGCTCATACAAAACTCAGCAAA TGTTTAAGGAGCTTCAAGATGCTCATACAAAACTCAGCAAA < 41bp 0.686128754831444 0.902481506361737 NA NA prediction 0.432705503060585 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13166058 chr10:13166057 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26394 0 0 0 0 2 OPTN chr10:13165995 3'AG 13165995 Downstream 63bp 24033 chr10 13166057 13166057 1 + G T STAD 13166058 + 13166038 13166078 41 TGTTTAAGGAGCTTCAAGAGGCTCATACAAAACTCAGCAAA TGTTTAAGGAGCTTCAAGATGCTCATACAAAACTCAGCAAA < 41bp 0.686128754831444 0.902481506361737 NA NA prediction 0.432705503060585 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13166058 chr10:13166057 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26394 0 0 0 0 2 OPTN chr10:13166110 5'GT 13166110 Upstream 54bp 24034 chrX 47422413 47422413 1 + G A UCEC 47422414 + 47422394 47422434 41 AATGGGGCCGAGCCATCCCGGGCAGTGGGCACCGTCAAAGT AATGGGGCCGAGCCATCCCAGGCAGTGGGCACCGTCAAAGT < 41bp 0.524451161776498 0.74080284565674 NA NA prediction 0.432703367760483 Functional Gain - ARAF ENSG00000078061 CDS Human protein_coding chrX:47422414 chrX:47422413 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_26395 0 0 1 0 1 ARAF chrX:47422462 5'GT 47422462 Upstream 50bp 24035 chr11 122774696 122774696 1 + G T LGG 122774697 + 122774677 122774717 41 CGAACTGGAAGAGTAAGAAGGAGGAAGGGCAGCTGCTGTCT CGAACTGGAAGAGTAAGAATGAGGAAGGGCAGCTGCTGTCT < 41bp 0.683116033540842 0.899464965966776 NA NA prediction 0.432697864851868 Functional Gain - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122774697 chr11:122774696 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_26396 0 0 0 0 1 C11orf63 chr11:122774633 3'AG 122774633 Downstream 64bp 24036 chr22 18064150 18064150 1 + G A SKCM 18064151 + 18064131 18064171 41 TGCCTGATGAAGACGGCTCGGGCGGAGGGCTTCTTCGGCAT TGCCTGATGAAGACGGCTCAGGCGGAGGGCTTCTTCGGCAT < 41bp 0.531894786609655 0.748238789339755 NA NA prediction 0.4326880054602 Functional Gain - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064151 chr22:18064150 nonsynonymous SNV 0.451 2 20 hm7G_associated_SNPs_26398 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064124 3'AG 18064124 Downstream 27bp 24037 chr22 18064150 18064150 1 + G A SKCM 18064151 + 18064131 18064171 41 TGCCTGATGAAGACGGCTCGGGCGGAGGGCTTCTTCGGCAT TGCCTGATGAAGACGGCTCAGGCGGAGGGCTTCTTCGGCAT < 41bp 0.531894786609655 0.748238789339755 NA NA prediction 0.4326880054602 Functional Gain - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064151 chr22:18064150 nonsynonymous SNV 0.451 2 20 hm7G_associated_SNPs_26398 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064179 5'GT 18064179 Upstream 30bp 24038 chr19 55814126 55814126 1 + C T PRAD 55814127 + 55814107 55814147 41 TGGCCGCCGGGTAGCCATGCGGAGCCTGCCATCCAACGGAG TGGCCGCCGGGTAGCCATGTGGAGCCTGCCATCCAACGGAG < 41bp 0.509186773198107 0.725529619001217 NA NA prediction 0.43268569160622 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55814127 chr19:55814126 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26399 0 0 0 0 1 BRSK1 chr19:55814065 3'AG 55814065 Downstream 62bp 24039 chr17 4798674 4798674 1 + G A UCEC 4798675 + 4798655 4798695 41 GCTGGTGGGCACGGAGAACGGGCTGATGTTGCTGGACCGAA GCTGGTGGGCACGGAGAACAGGCTGATGTTGCTGGACCGAA < 41bp 0.510551431104773 0.72689344308304 NA NA prediction 0.432684023956533 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4798675 chr17:4798674 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_26400 0 0 1 0 1 MINK1 chr17:4798645 3'AG 4798645 Downstream 30bp 24040 chr11 46747499 46747499 1 + G A UCEC 46747500 + 46747480 46747520 41 GAGCAGTGTGTCCCTGATCGGGGGCAGCAGTACCAGGGGCG GAGCAGTGTGTCCCTGATCAGGGGCAGCAGTACCAGGGGCG < 41bp 0.52744617955753 0.743777038137328 NA NA prediction 0.432661717159596 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46747500 chr11:46747499 nonsynonymous SNV 0.036 0 20 hm7G_associated_SNPs_26402 0 0 1 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 91bp 24041 chr2 71209079 71209079 1 + G A COAD 71209080 + 71209060 71209100 41 CCACAGTCAGACATGCAACGGCTCCACGCCCCTGCACCTGG CCACAGTCAGACATGCAACAGCTCCACGCCCCTGCACCTGG < 41bp 0.516569509659462 0.732882802586149 NA NA prediction 0.432626585853373 Functional Gain - ANKRD53 ENSG00000144031 CDS Human protein_coding chr2:71209080 chr2:71209079 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_26403 0 0 0 0 1 ANKRD53 chr2:71209066 3'AG 71209066 Downstream 14bp 24042 chr16 4555583 4555583 1 + G A LIHC 4555584 + 4555564 4555604 41 GTCAGAAAAAAAGAACTCTGGGGCCCTAGAAAAGGAGAACC GTCAGAAAAAAAGAACTCTAGGGCCCTAGAAAAGGAGAACC < 41bp 0.509978878637473 0.726290021434296 NA NA prediction 0.432622285593646 Functional Gain - HMOX2 ENSG00000103415 CDS Human protein_coding chr16:4555584 chr16:4555583 nonsynonymous SNV 0.181 0 20 hm7G_associated_SNPs_26404 0 0 1 0 2 HMOX2 chr16:4555485 3'AG 4555485 Downstream 99bp 24043 chr16 4555583 4555583 1 + G A LIHC 4555584 + 4555564 4555604 41 GTCAGAAAAAAAGAACTCTGGGGCCCTAGAAAAGGAGAACC GTCAGAAAAAAAGAACTCTAGGGCCCTAGAAAAGGAGAACC < 41bp 0.509978878637473 0.726290021434296 NA NA prediction 0.432622285593646 Functional Gain - HMOX2 ENSG00000103415 CDS Human protein_coding chr16:4555584 chr16:4555583 nonsynonymous SNV 0.181 0 20 hm7G_associated_SNPs_26404 0 0 1 0 2 HMOX2 chr16:4555611 5'GT 4555611 Upstream 29bp 24044 chr10 50833616 50833616 1 + G A ESCA 50833617 + 50833597 50833637 41 CTCCTCCTACCGGCTCCCCGGCCATACCCAGGACACGCTGG CTCCTCCTACCGGCTCCCCAGCCATACCCAGGACACGCTGG < 41bp 0.546914839687576 0.763215009287287 NA NA prediction 0.432600339199422 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50833617 chr10:50833616 nonsynonymous SNV 0.828 5 20 hm7G_associated_SNPs_26406 0 0 0 0 2 CHAT chr10:50833519 3'AG 50833519 Downstream 98bp 24045 chr10 50833616 50833616 1 + G A ESCA 50833617 + 50833597 50833637 41 CTCCTCCTACCGGCTCCCCGGCCATACCCAGGACACGCTGG CTCCTCCTACCGGCTCCCCAGCCATACCCAGGACACGCTGG < 41bp 0.546914839687576 0.763215009287287 NA NA prediction 0.432600339199422 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50833617 chr10:50833616 nonsynonymous SNV 0.828 5 20 hm7G_associated_SNPs_26406 0 0 0 0 2 CHAT chr10:50833699 5'GT 50833699 Upstream 84bp 24046 chr17 37901727 37901727 1 + G A SKCM 37901728 + 37901708 37901748 41 GACTTCTCTGGCCATGCTGGGCGTGTCATTGAGAACCCCCG GACTTCTCTGGCCATGCTGAGCGTGTCATTGAGAACCCCCG < 41bp 0.513592577464514 0.729890188150617 NA NA prediction 0.432595221372206 Functional Gain - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37901728 chr17:37901727 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_26407 0 0 1 0 1 GRB7 chr17:37901675 3'AG 37901675 Downstream 53bp 24047 chr2 71187121 71187121 1 + G T COAD 71187122 + 71187102 71187142 41 CCGAGGAGATGATTCAGACGGGCATTTCTCCTATTGACGTC CCGAGGAGATGATTCAGACTGGCATTTCTCCTATTGACGTC < 41bp 0.354844255594844 0.716294861124219 NA NA prediction 0.432589722248439 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187122 chr2:71187121 synonymous SNV . 0 20 hm7G_associated_SNPs_26408 0 0 1 2 2 ATP6V1B1 chr2:71187069 3'AG 71187069 Downstream 53bp 24048 chr2 71187121 71187121 1 + G T COAD 71187122 + 71187102 71187142 41 CCGAGGAGATGATTCAGACGGGCATTTCTCCTATTGACGTC CCGAGGAGATGATTCAGACTGGCATTTCTCCTATTGACGTC < 41bp 0.354844255594844 0.716294861124219 NA NA prediction 0.432589722248439 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187122 chr2:71187121 synonymous SNV . 0 20 hm7G_associated_SNPs_26408 0 0 1 2 2 ATP6V1B1 chr2:71187208 5'GT 71187208 Upstream 88bp 24049 chr3 138178803 138178803 1 + G A PRAD 138178804 + 138178784 138178824 41 CAGTTGCAGGGCACCCTGCGGGTCATCCTGGAGCCCCTCCT CAGTTGCAGGGCACCCTGCAGGTCATCCTGGAGCCCCTCCT < 41bp 0.531725105297266 0.748008451846968 NA NA prediction 0.432566693099403 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138178804 chr3:138178803 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_26410 0 0 0 0 2 ESYT3 chr3:138178787 3'AG 138178787 Downstream 17bp 24050 chr3 138178803 138178803 1 + G A PRAD 138178804 + 138178784 138178824 41 CAGTTGCAGGGCACCCTGCGGGTCATCCTGGAGCCCCTCCT CAGTTGCAGGGCACCCTGCAGGTCATCCTGGAGCCCCTCCT < 41bp 0.531725105297266 0.748008451846968 NA NA prediction 0.432566693099403 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138178804 chr3:138178803 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_26410 0 0 0 0 2 ESYT3 chr3:138178876 5'GT 138178876 Upstream 74bp 24051 chr17 41582097 41582097 1 + G T KIRC 41582098 + 41582078 41582118 41 GGAAGAAGCATGCCTTTGGGGGCAACAAAGCCTCTTACGGA GGAAGAAGCATGCCTTTGGTGGCAACAAAGCCTCTTACGGA < 41bp 0.366646446614578 0.716278670700093 NA NA prediction 0.432557341400186 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41582098 chr17:41582097 synonymous SNV . 0 20 hm7G_associated_SNPs_26411 0 0 1 0 2 DHX8 chr17:41582012 3'AG 41582012 Downstream 86bp 24052 chr17 41582097 41582097 1 + G T KIRC 41582098 + 41582078 41582118 41 GGAAGAAGCATGCCTTTGGGGGCAACAAAGCCTCTTACGGA GGAAGAAGCATGCCTTTGGTGGCAACAAAGCCTCTTACGGA < 41bp 0.366646446614578 0.716278670700093 NA NA prediction 0.432557341400186 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41582098 chr17:41582097 synonymous SNV . 0 20 hm7G_associated_SNPs_26411 0 0 1 0 2 DHX8 chr17:41582193 5'GT 41582193 Upstream 97bp 24053 chr6 170104105 170104105 1 - C A UCEC 170104104 - 170104084 170104124 41 GGGGGAAAAACAGCAAAGAGGGATAAAATAGTTTTTGACTC GGGGGAAAAACAGCAAAGATGGATAAAATAGTTTTTGACTC < 41bp 0.404422891498407 0.716276005143152 NA NA prediction 0.432552010286305 Functional Gain - PHF10 ENSG00000130024 CDS Human protein_coding chr6:170104104 chr6:170104105 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_26412 0 0 1 0 1 PHF10 chr6:170104184 3'AG 170104184 Downstream 80bp 24054 chr5 179991505 179991505 1 + G T LUAD 179991506 + 179991486 179991526 41 CAGGAAATCCCCTTACCCAGGATATATTGAACCTTTATCAG CAGGAAATCCCCTTACCCATGATATATTGAACCTTTATCAG < 41bp 0.380202684252994 0.716273978919809 NA NA prediction 0.432547957839619 Functional Gain - CNOT6 ENSG00000113300 CDS Human protein_coding chr5:179991506 chr5:179991505 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26413 0 0 1 0 3 CNOT6 chr5:179991489 3'AG 179991489 Downstream 17bp 24055 chr5 179991505 179991505 1 + G T LUAD 179991506 + 179991486 179991526 41 CAGGAAATCCCCTTACCCAGGATATATTGAACCTTTATCAG CAGGAAATCCCCTTACCCATGATATATTGAACCTTTATCAG < 41bp 0.380202684252994 0.716273978919809 NA NA prediction 0.432547957839619 Functional Gain - CNOT6 ENSG00000113300 CDS Human protein_coding chr5:179991506 chr5:179991505 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26413 0 0 1 0 3 CNOT6 chr5:179991578 5'GT 179991578 Upstream 74bp 24056 chr5 179991505 179991505 1 + G T LUAD 179991506 + 179991486 179991526 41 CAGGAAATCCCCTTACCCAGGATATATTGAACCTTTATCAG CAGGAAATCCCCTTACCCATGATATATTGAACCTTTATCAG < 41bp 0.380202684252994 0.716273978919809 NA NA prediction 0.432547957839619 Functional Gain - CNOT6 ENSG00000113300 CDS Human protein_coding chr5:179991506 chr5:179991505 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26413 0 0 1 0 3 CNOT6 chr5:179991593 5'GT 179991593 Upstream 89bp 24057 chr19 4318476 4318476 1 + G A THYM 4318477 + 4318457 4318497 41 AAGATGGCAAGGGGCGGACGGCGTCTCCCATCAACTCCCCA AAGATGGCAAGGGGCGGACAGCGTCTCCCATCAACTCCCCA < 41bp 0.524359053132383 0.740622638475862 NA NA prediction 0.432527170686958 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4318477 chr19:4318476 synonymous SNV . 0 20 hm7G_associated_SNPs_26414 0 0 0 0 1 FSD1 chr19:4318502 5'GT 4318502 Upstream 27bp 24058 chr16 772362 772362 1 + G A ESCA 772363 + 772343 772383 41 TGCCTGCTGGGGCCCGCGTGGTGTCTGGGCGCTTCCCACTC TGCCTGCTGGGGCCCGCGTAGTGTCTGGGCGCTTCCCACTC < 41bp 0.498666640160683 0.71625561771116 NA NA prediction 0.43251123542232 Functional Gain - FAM173A ENSG00000103254 CDS Human protein_coding chr16:772363 chr16:772362 synonymous SNV . 0 20 hm7G_associated_SNPs_26416 0 0 1 0 1 FAM173A chr16:772309 3'AG 772309 Downstream 54bp 24059 chr12 7354385 7354385 1 + C T rs144897942 7354386 + 7354366 7354406 41 GAGGAGGATCTGCAGCACACGGCCAGTGACTTTGTGGCCAA GAGGAGGATCTGCAGCACATGGCCAGTGACTTTGTGGCCAA < 41bp 0.503081110541199 0.719315815790496 NA NA prediction 0.432469410498595 Functional Gain - PEX5 ENSG00000139197 CDS Human protein_coding chr12:7354386 chr12:7354385 nonsynonymous SNV 0.444 1 20 hm7G_associated_SNPs_26419 1 0 1 0 2 PEX5 chr12:7354347 3'AG 7354347 Downstream 39bp 24060 chr12 7354385 7354385 1 + C T rs144897942 7354386 + 7354366 7354406 41 GAGGAGGATCTGCAGCACACGGCCAGTGACTTTGTGGCCAA GAGGAGGATCTGCAGCACATGGCCAGTGACTTTGTGGCCAA < 41bp 0.503081110541199 0.719315815790496 NA NA prediction 0.432469410498595 Functional Gain - PEX5 ENSG00000139197 CDS Human protein_coding chr12:7354386 chr12:7354385 nonsynonymous SNV 0.444 1 20 hm7G_associated_SNPs_26419 1 0 1 0 2 PEX5 chr12:7354437 5'GT 7354437 Upstream 53bp 24061 chr1 6688663 6688663 1 + G A CESC 6688664 + 6688644 6688684 41 ATCTGCTCCGAGCACTTCCGGCCAGAGTGCTTCAGCGCCTT ATCTGCTCCGAGCACTTCCAGCCAGAGTGCTTCAGCGCCTT < 41bp 0.539447732645301 0.755679800158292 NA NA prediction 0.432464135025981 Functional Gain - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6688664 chr1:6688663 nonsynonymous SNV 0.311 2 20 hm7G_associated_SNPs_26420 0 0 1 0 1 THAP3 chr1:6688751 5'GT 6688751 Upstream 89bp 24062 chr17 78210824 78210824 1 + G T UCEC 78210825 + 78210805 78210845 41 TAACAGGGGAGACAGCTGAGGGGCTCCCTCCAGTCCGGATC TAACAGGGGAGACAGCTGATGGGCTCCCTCCAGTCCGGATC < 41bp 0.35291303371195 0.716228297737868 NA NA prediction 0.432456595475735 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210825 chr17:78210824 nonsynonymous SNV 0.757 1 20 hm7G_associated_SNPs_26423 0 0 1 0 2 SLC26A11 chr17:78210727 3'AG 78210727 Downstream 98bp 24063 chr17 78210824 78210824 1 + G T UCEC 78210825 + 78210805 78210845 41 TAACAGGGGAGACAGCTGAGGGGCTCCCTCCAGTCCGGATC TAACAGGGGAGACAGCTGATGGGCTCCCTCCAGTCCGGATC < 41bp 0.35291303371195 0.716228297737868 NA NA prediction 0.432456595475735 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210825 chr17:78210824 nonsynonymous SNV 0.757 1 20 hm7G_associated_SNPs_26423 0 0 1 0 2 SLC26A11 chr17:78210902 5'GT 78210902 Upstream 79bp 24064 chr19 38795048 38795048 1 + G T LUSC 38795049 + 38795029 38795069 41 TCCCAGAAGCCCGGTGTGGGGGCGGGCCACGGGGGAGATCC TCCCAGAAGCCCGGTGTGGTGGCGGGCCACGGGGGAGATCC < 41bp 0.683958865396552 0.900176294141075 NA NA prediction 0.432434857489046 Functional Gain - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795049 chr19:38795048 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_26425 0 0 0 0 2 C19orf33 chr19:38795015 3'AG 38795015 Downstream 34bp 24065 chr19 38795048 38795048 1 + G T LUSC 38795049 + 38795029 38795069 41 TCCCAGAAGCCCGGTGTGGGGGCGGGCCACGGGGGAGATCC TCCCAGAAGCCCGGTGTGGTGGCGGGCCACGGGGGAGATCC < 41bp 0.683958865396552 0.900176294141075 NA NA prediction 0.432434857489046 Functional Gain - C19orf33 ENSG00000167644;ENSG00000267748 CDS Human other chr19:38795049 chr19:38795048 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_26425 0 0 0 0 2 C19orf33 chr19:38795130 5'GT 38795130 Upstream 83bp 24066 chr3 32915422 32915422 1 + G A UCEC 32915423 + 32915403 32915443 41 GAGGCACTGCAGGACTCACGGGCACTCACCATCCAGCTGCT GAGGCACTGCAGGACTCACAGGCACTCACCATCCAGCTGCT < 41bp 0.538625449164399 0.75484184885192 NA NA prediction 0.432432799375042 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32915423 chr3:32915422 nonsynonymous SNV 0.860 3 20 hm7G_associated_SNPs_26426 0 0 0 0 1 TRIM71 chr3:32915477 5'GT 32915477 Upstream 56bp 24067 chr17 2276707 2276707 1 + G A rs61733096 2276708 + 2276688 2276728 41 GTGGTGAGGCAGCGGGAGCGGGAGGCCCACCCAGCCACACG GTGGTGAGGCAGCGGGAGCAGGAGGCCCACCCAGCCACACG < 41bp 0.507029965353987 0.723239602686549 NA NA prediction 0.432419274665123 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2276708 chr17:2276707 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_26427 0 0 1 0 1 SGSM2 chr17:2276625 3'AG 2276625 Downstream 83bp 24068 chrX 152087581 152087581 1 + G T UCEC 152087582 + 152087562 152087602 41 GGGACACCGAGGAGGAGGAGGAGGAGGAGGTGGTGCCATTC GGGACACCGAGGAGGAGGATGAGGAGGAGGTGGTGCCATTC < 41bp 0.688306397565731 0.904513420614509 NA NA prediction 0.432414046097555 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152087582 chrX:152087581 nonsynonymous SNV 0.873 1 20 hm7G_associated_SNPs_26429 0 0 0 0 1 ZNF185 chrX:152087625 5'GT 152087625 Upstream 45bp 24069 chr11 13732401 13732401 1 + G T UCEC 13732402 + 13732382 13732422 41 TCGATTGTTGGTGCCAGTTGGAAAGAACCTTTTCCAGTAAG TCGATTGTTGGTGCCAGTTTGAAAGAACCTTTTCCAGTAAG < 41bp 0.39823704174993 0.716194586533966 NA NA prediction 0.432389173067932 Functional Gain - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13732402 chr11:13732401 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26432 0 0 1 0 1 FAR1 chr11:13732417 5'GT 13732417 Upstream 17bp 24070 chr19 16942395 16942395 1 + C T LUAD 16942396 + 16942376 16942416 41 TCAACGCTTTTCTTCCCCTCGGATATAGAATAGACATTCCC TCAACGCTTTTCTTCCCCTTGGATATAGAATAGACATTCCC < 41bp 0.499968557876533 0.716181000071619 NA NA prediction 0.432362000143239 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16942396 chr19:16942395 synonymous SNV . 0 20 hm7G_associated_SNPs_26436 0 0 1 0 2 SIN3B chr19:16942305 3'AG 16942305 Downstream 91bp 24071 chr19 16942395 16942395 1 + C T LUAD 16942396 + 16942376 16942416 41 TCAACGCTTTTCTTCCCCTCGGATATAGAATAGACATTCCC TCAACGCTTTTCTTCCCCTTGGATATAGAATAGACATTCCC < 41bp 0.499968557876533 0.716181000071619 NA NA prediction 0.432362000143239 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16942396 chr19:16942395 synonymous SNV . 0 20 hm7G_associated_SNPs_26436 0 0 1 0 2 SIN3B chr19:16942458 5'GT 16942458 Upstream 64bp 24072 chr17 46052947 46052947 1 + G T COAD 46052948 + 46052928 46052968 41 AGTCAGCTGGCTGAGATTGGGGCAGCGGCTCAGCAGTCCCT AGTCAGCTGGCTGAGATTGTGGCAGCGGCTCAGCAGTCCCT < 41bp 0.614432994751402 0.83061026103388 NA NA prediction 0.432354532564955 Functional Gain - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46052948 chr17:46052947 nonsynonymous SNV 0.782 3 20 hm7G_associated_SNPs_26437 0 0 1 0 2 CDK5RAP3 chr17:46052880 3'AG 46052880 Downstream 68bp 24073 chr17 46052947 46052947 1 + G T COAD 46052948 + 46052928 46052968 41 AGTCAGCTGGCTGAGATTGGGGCAGCGGCTCAGCAGTCCCT AGTCAGCTGGCTGAGATTGTGGCAGCGGCTCAGCAGTCCCT < 41bp 0.614432994751402 0.83061026103388 NA NA prediction 0.432354532564955 Functional Gain - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46052948 chr17:46052947 nonsynonymous SNV 0.782 3 20 hm7G_associated_SNPs_26437 0 0 1 0 2 CDK5RAP3 chr17:46053019 5'GT 46053019 Upstream 73bp 24074 chr12 132326281 132326281 1 + G A rs76305475 132326282 + 132326262 132326302 41 GGCCGTACTACCAGGGCCCGGTGGGTGACCCGCTGCGCTAC GGCCGTACTACCAGGGCCCAGTGGGTGACCCGCTGCGCTAC < 41bp 0.495313034887214 0.716173536356323 NA NA prediction 0.432347072712647 Functional Gain - MMP17 ENSG00000198598 CDS Human protein_coding chr12:132326282 chr12:132326281 synonymous SNV . 0 20 hm7G_associated_SNPs_26439 0 0 1 0 1 MMP17 chr12:132326345 5'GT 132326345 Upstream 65bp 24075 chr5 43651929 43651929 1 + C T STAD 43651930 + 43651910 43651950 41 ACCTGTACCTGCTCCCTGCCGGCACCTTTGTTGGTGGATAT ACCTGTACCTGCTCCCTGCTGGCACCTTTGTTGGTGGATAT < 41bp 0.502119787760256 0.718280794291126 NA NA prediction 0.432322013061741 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43651930 chr5:43651929 synonymous SNV . 0 20 hm7G_associated_SNPs_26441 0 0 1 0 2 NNT chr5:43651841 3'AG 43651841 Downstream 89bp 24076 chr5 43651929 43651929 1 + C T STAD 43651930 + 43651910 43651950 41 ACCTGTACCTGCTCCCTGCCGGCACCTTTGTTGGTGGATAT ACCTGTACCTGCTCCCTGCTGGCACCTTTGTTGGTGGATAT < 41bp 0.502119787760256 0.718280794291126 NA NA prediction 0.432322013061741 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43651930 chr5:43651929 synonymous SNV . 0 20 hm7G_associated_SNPs_26441 0 0 1 0 2 NNT chr5:43651986 5'GT 43651986 Upstream 58bp 24077 chr13 25272825 25272825 1 + C T BRCA 25272826 + 25272806 25272846 41 ACGAGATGGATGACCCCCACGGCAAGCGCTTCCTCATGGTG ACGAGATGGATGACCCCCATGGCAAGCGCTTCCTCATGGTG < 41bp 0.499330092520166 0.716152731850383 NA NA prediction 0.432305463700766 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25272826 chr13:25272825 synonymous SNV . 0 20 hm7G_associated_SNPs_26443 0 0 0 0 1 ATP12A chr13:25272796 3'AG 25272796 Downstream 30bp 24078 chr12 64879765 64879765 1 + G T LIHC 64879766 + 64879746 64879786 41 GTACCTTACTGCTTTATCAGGAATTAATGCGAAAGGGGATA GTACCTTACTGCTTTATCATGAATTAATGCGAAAGGGGATA < 41bp 0.677271150678302 0.893416074433089 NA NA prediction 0.432289847509574 Functional Gain - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64879766 chr12:64879765 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_26445 0 0 1 0 2 TBK1 chr12:64879706 3'AG 64879706 Downstream 60bp 24079 chr12 64879765 64879765 1 + G T LIHC 64879766 + 64879746 64879786 41 GTACCTTACTGCTTTATCAGGAATTAATGCGAAAGGGGATA GTACCTTACTGCTTTATCATGAATTAATGCGAAAGGGGATA < 41bp 0.677271150678302 0.893416074433089 NA NA prediction 0.432289847509574 Functional Gain - TBK1 ENSG00000183735 CDS Human protein_coding chr12:64879766 chr12:64879765 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_26445 0 0 1 0 2 TBK1 chr12:64879797 5'GT 64879797 Upstream 33bp 24080 chr2 238737922 238737922 1 + G T GBM 238737923 + 238737903 238737943 41 GCTGTGAAAGAAATGAATGGGATAGAAATAAATGGAAAGTC GCTGTGAAAGAAATGAATGTGATAGAAATAAATGGAAAGTC < 41bp 0.65947508754086 0.875619301875648 NA NA prediction 0.432288428669576 Functional Gain - RBM44 ENSG00000177483 CDS Human protein_coding chr2:238737923 chr2:238737922 nonsynonymous SNV 0.835 3 20 hm7G_associated_SNPs_26446 0 0 0 0 1 RBM44 chr2:238737860 3'AG 238737860 Downstream 63bp 24081 chr13 111862229 111862229 1 + G T LUAD 111862230 + 111862210 111862250 41 TCTTTGCAGACATCGGGCTGGGGAGTGACTCCGTGTGTGCC TCTTTGCAGACATCGGGCTTGGGAGTGACTCCGTGTGTGCC < 41bp 0.378413238891776 0.716138722056781 NA NA prediction 0.432277444113562 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111862230 chr13:111862229 synonymous SNV . 0 20 hm7G_associated_SNPs_26447 0 0 1 0 1 ARHGEF7 chr13:111862219 3'AG 111862219 Downstream 11bp 24082 chr19 10574595 10574595 1 + G A KIRC 10574596 + 10574576 10574616 41 TGACCGAGAGCGCGAGCGTGGCATGGAAATCAGCCCCATGT TGACCGAGAGCGCGAGCGTAGCATGGAAATCAGCCCCATGT < 41bp 0.501135617881897 0.717273401481877 NA NA prediction 0.432275567199959 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10574596 chr19:10574595 nonsynonymous SNV 0.370 4 20 hm7G_associated_SNPs_26448 0 0 0 0 1 PDE4A chr19:10574651 5'GT 10574651 Upstream 57bp 24083 chr3 129270016 129270016 1 + G A LUAD 129270017 + 129269997 129270037 41 GGCCAAGGCCCCTAAAGCTGGGCAGGGGCCAAACACCAAGG GGCCAAGGCCCCTAAAGCTAGGCAGGGGCCAAACACCAAGG < 41bp 0.557234686494064 0.773365679535725 NA NA prediction 0.432261986083322 Functional Gain - H1FOO ENSG00000178804 CDS Human protein_coding chr3:129270017 chr3:129270016 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_26450 0 0 0 0 1 H1FOO chr3:129269950 3'AG 129269950 Downstream 67bp 24084 chr3 9724866 9724866 1 + G T THCA 9724867 + 9724847 9724887 41 ACTTTTCTCCAACAGTGTTGGGATCTGGTGCAACAAACACA ACTTTTCTCCAACAGTGTTTGGATCTGGTGCAACAAACACA < 41bp 0.689448715338829 0.905567641901832 NA NA prediction 0.432237853126006 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9724867 chr3:9724866 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_26452 0 0 1 2 1 MTMR14 chr3:9724928 5'GT 9724928 Upstream 63bp 24085 chr17 45669330 45669330 1 + G T LUAD 45669331 + 45669311 45669351 41 CTGTCTGCCAGGTCAGTGTGGGCCATCCATCTGAGGTTGAT CTGTCTGCCAGGTCAGTGTTGGCCATCCATCTGAGGTTGAT < 41bp 0.368926052180591 0.716111712538402 NA NA prediction 0.432223425076804 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45669331 chr17:45669330 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26454 0 0 0 0 3 NPEPPS chr17:45669270 3'AG 45669270 Downstream 61bp 24086 chr17 45669330 45669330 1 + G T LUAD 45669331 + 45669311 45669351 41 CTGTCTGCCAGGTCAGTGTGGGCCATCCATCTGAGGTTGAT CTGTCTGCCAGGTCAGTGTTGGCCATCCATCTGAGGTTGAT < 41bp 0.368926052180591 0.716111712538402 NA NA prediction 0.432223425076804 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45669331 chr17:45669330 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26454 0 0 0 0 3 NPEPPS chr17:45669322 3'AG 45669322 Downstream 9bp 24087 chr17 45669330 45669330 1 + G T LUAD 45669331 + 45669311 45669351 41 CTGTCTGCCAGGTCAGTGTGGGCCATCCATCTGAGGTTGAT CTGTCTGCCAGGTCAGTGTTGGCCATCCATCTGAGGTTGAT < 41bp 0.368926052180591 0.716111712538402 NA NA prediction 0.432223425076804 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45669331 chr17:45669330 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26454 0 0 0 0 3 NPEPPS chr17:45669426 5'GT 45669426 Upstream 97bp 24088 chr14 104645992 104645992 1 + G A rs143169161 104645993 + 104645973 104646013 41 AGTCGGCCGAGTACCTGGCGGCCCTGGAGCGAGCCACGGCG AGTCGGCCGAGTACCTGGCAGCCCTGGAGCGAGCCACGGCG < 41bp 0.514368755829688 0.730471321506718 NA NA prediction 0.432205131354061 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104645993 chr14:104645992 synonymous SNV . 0 20 hm7G_associated_SNPs_26457 0 0 1 0 1 KIF26A chr14:104645946 3'AG 104645946 Downstream 47bp 24089 chr12 3040232 3040232 1 + C T LUAD 3040233 + 3040213 3040253 41 CTTCCGGTTCTGCTACTGCCGCCCAACCAGCTGATAACCTC CTTCCGGTTCTGCTACTGCTGCCCAACCAGCTGATAACCTC < 41bp 0.510146221371297 0.726245773221212 NA NA prediction 0.43219910369983 Functional Gain - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3040233 chr12:3040232 nonsynonymous SNV 0.059 0 20 hm7G_associated_SNPs_26459 0 0 1 0 1 TULP3 chr12:3040203 3'AG 3040203 Downstream 30bp 24090 chr8 8094699 8094699 1 + G T rs146320244 8094700 + 8094680 8094720 41 CTGGTCAGGGTCCTGCGGAGGCTGGCTGCCTGCCGGGAGCA CTGGTCAGGGTCCTGCGGATGCTGGCTGCCTGCCGGGAGCA < 41bp 0.393371086651697 0.716097791142719 NA NA prediction 0.432195582285437 Functional Gain - FAM86B3P ENSG00000173295 ncRNA_exonic Human other chr8:8094700 chr8:8094699 . . 0 20 hm7G_associated_SNPs_26461 0 0 0 0 2 FAM86B3P chr8:8094648 3'AG 8094648 Downstream 52bp 24091 chr8 8094699 8094699 1 + G T rs146320244 8094700 + 8094680 8094720 41 CTGGTCAGGGTCCTGCGGAGGCTGGCTGCCTGCCGGGAGCA CTGGTCAGGGTCCTGCGGATGCTGGCTGCCTGCCGGGAGCA < 41bp 0.393371086651697 0.716097791142719 NA NA prediction 0.432195582285437 Functional Gain - FAM86B3P ENSG00000173295 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr8:8094700 chr8:8094699 . . 0 20 hm7G_associated_SNPs_26461 0 0 0 0 2 FAM86B3P chr8:8094797 5'GT 8094797 Upstream 99bp 24092 chr19 10979939 10979939 1 + G A UCEC 10979940 + 10979920 10979960 41 CACCTTGGATGATCACTCAGGCACCACTGCCACCCCCAGCA CACCTTGGATGATCACTCAAGCACCACTGCCACCCCCAGCA < 41bp 0.493960988001113 0.71609487541644 NA NA prediction 0.43218975083288 Functional Gain - C19orf38 ENSG00000214212 CDS Human protein_coding chr19:10979940 chr19:10979939 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_26463 0 0 0 0 1 C19orf38 chr19:10979894 3'AG 10979894 Downstream 46bp 24093 chr6 138725677 138725677 1 + G A rs2274659 138725678 + 138725658 138725698 41 CCGGGGCGGCCGAGGACGCGGCGGCCCAAGCTGTGGAGACG CCGGGGCGGCCGAGGACGCAGCGGCCCAAGCTGTGGAGACG < 41bp 0.528870751776151 0.74496172151171 NA NA prediction 0.432181939471118 Functional Gain - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138725678 chr6:138725677 synonymous SNV . 0 20 hm7G_associated_SNPs_26464 0 0 1 0 1 HEBP2 chr6:138725734 5'GT 138725734 Upstream 58bp 24094 chr16 69143365 69143365 1 + G T LUSC 69143366 + 69143346 69143386 41 GTTTGCCCTGGCAGTGCTGGGTGGCATCCTGGCAGCCTATG GTTTGCCCTGGCAGTGCTGTGTGGCATCCTGGCAGCCTATG < 41bp 0.373688617045939 0.716089831631621 NA NA prediction 0.432179663263242 Functional Gain - HAS3 ENSG00000103044 CDS Human protein_coding chr16:69143366 chr16:69143365 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26465 0 0 0 0 1 HAS3 chr16:69143299 3'AG 69143299 Downstream 67bp 24095 chr3 52514271 52514271 1 + C T rs71297399 52514272 + 52514252 52514292 41 CCCCTCCCACTGTGGCTCCCGCATCTGCCTCCCTGCCCCAG CCCCTCCCACTGTGGCTCCTGCATCTGCCTCCCTGCCCCAG < 41bp 0.498583720064325 0.716072029935594 NA NA prediction 0.432144059871187 Functional Gain - NISCH ENSG00000010322 CDS Human protein_coding chr3:52514272 chr3:52514271 synonymous SNV . 0 20 hm7G_associated_SNPs_26467 0 0 1 0 1 NISCH chr3:52514311 5'GT 52514311 Upstream 41bp 24096 chr12 50027255 50027255 1 + G T LGG 50027256 + 50027236 50027276 41 AGAGTACAAGTCGGACACAGGCAAACCTTATTACTATAACA AGAGTACAAGTCGGACACATGCAAACCTTATTACTATAACA < 41bp 0.367245122895966 0.71606573290398 NA NA prediction 0.43213146580796 Functional Gain - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50027256 chr12:50027255 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_26469 0 0 1 0 1 PRPF40B chr12:50027210 3'AG 50027210 Downstream 46bp 24097 chr4 1219270 1219270 1 - C T UCEC 1219269 - 1219249 1219289 41 ATCCTGAACCTGTACCGGCGGGCCACCTGGCTGCACCAGGC ATCCTGAACCTGTACCGGCAGGCCACCTGGCTGCACCAGGC < 41bp 0.511575833780482 0.727641507687472 NA NA prediction 0.43213134781398 Functional Gain - CTBP1 ENSG00000159692 CDS Human protein_coding chr4:1219269 chr4:1219270 nonsynonymous SNV 0.918 2 20 hm7G_associated_SNPs_26470 0 0 1 0 1 CTBP1 chr4:1219354 3'AG 1219354 Downstream 85bp 24098 chr10 134012440 134012440 1 + G A SARC 134012441 + 134012421 134012461 41 ACCAAGGTGATGAGCAAGGGGGCGGCCGACGCCATCGCTCA ACCAAGGTGATGAGCAAGGAGGCGGCCGACGCCATCGCTCA < 41bp 0.54962843004725 0.765684707432472 NA NA prediction 0.432112554770444 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134012441 chr10:134012440 nonsynonymous SNV 0.738 2 20 hm7G_associated_SNPs_26472 0 0 0 0 2 DPYSL4 chr10:134012355 3'AG 134012355 Downstream 86bp 24099 chr10 134012440 134012440 1 + G A SARC 134012441 + 134012421 134012461 41 ACCAAGGTGATGAGCAAGGGGGCGGCCGACGCCATCGCTCA ACCAAGGTGATGAGCAAGGAGGCGGCCGACGCCATCGCTCA < 41bp 0.54962843004725 0.765684707432472 NA NA prediction 0.432112554770444 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134012441 chr10:134012440 nonsynonymous SNV 0.738 2 20 hm7G_associated_SNPs_26472 0 0 0 0 2 DPYSL4 chr10:134012475 5'GT 134012475 Upstream 36bp 24100 chrX 49104893 49104893 1 + G A UCEC 49104894 + 49104874 49104914 41 GTGGAGAATAGTGCCCAGCGGGTCATCCACTTGGCGGGTCA GTGGAGAATAGTGCCCAGCAGGTCATCCACTTGGCGGGTCA < 41bp 0.528487363162195 0.744536652188101 NA NA prediction 0.432098578051813 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49104894 chrX:49104893 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_26475 0 0 1 0 2 CCDC22 chrX:49104868 3'AG 49104868 Downstream 26bp 24101 chrX 49104893 49104893 1 + G A UCEC 49104894 + 49104874 49104914 41 GTGGAGAATAGTGCCCAGCGGGTCATCCACTTGGCGGGTCA GTGGAGAATAGTGCCCAGCAGGTCATCCACTTGGCGGGTCA < 41bp 0.528487363162195 0.744536652188101 NA NA prediction 0.432098578051813 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49104894 chrX:49104893 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_26475 0 0 1 0 2 CCDC22 chrX:49104984 5'GT 49104984 Upstream 92bp 24102 chr19 46173952 46173952 1 + G A BLCA 46173953 + 46173933 46173973 41 GCTGGGAACGGTACCGCAGGGAGTGCCAGGAGACCTTGGCA GCTGGGAACGGTACCGCAGAGAGTGCCAGGAGACCTTGGCA < 41bp 0.520262381193591 0.736310346892963 NA NA prediction 0.432095931398743 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173953 chr19:46173952 synonymous SNV . 0 20 hm7G_associated_SNPs_26476 0 0 1 0 2 GIPR chr19:46173893 3'AG 46173893 Downstream 60bp 24103 chr19 46173952 46173952 1 + G A BLCA 46173953 + 46173933 46173973 41 GCTGGGAACGGTACCGCAGGGAGTGCCAGGAGACCTTGGCA GCTGGGAACGGTACCGCAGAGAGTGCCAGGAGACCTTGGCA < 41bp 0.520262381193591 0.736310346892963 NA NA prediction 0.432095931398743 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173953 chr19:46173952 synonymous SNV . 0 20 hm7G_associated_SNPs_26476 0 0 1 0 2 GIPR chr19:46173992 5'GT 46173992 Upstream 41bp 24104 chr17 45376835 45376835 1 + G T UCEC 45376836 + 45376816 45376856 41 CTGTGTCTGTATCCAGCCGGGCTCCTATGGGGACACCTGTG CTGTGTCTGTATCCAGCCGTGCTCCTATGGGGACACCTGTG < 41bp 0.693723324893156 0.9097665267217 NA NA prediction 0.432086403657087 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376836 chr17:45376835 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_26478 0 0 0 0 1 ITGB3 chr17:45376896 5'GT 45376896 Upstream 62bp 24105 chr16 70693544 70693544 1 + G T COAD 70693545 + 70693525 70693565 41 TGGAGGTCAGCCCCAAGGTGGAATCCGTGTTGTCCCTCTTG TGGAGGTCAGCCCCAAGGTTGAATCCGTGTTGTCCCTCTTG < 41bp 0.362196995326918 0.71603637864754 NA NA prediction 0.432072757295079 Functional Gain - IL34 ENSG00000157368 CDS Human protein_coding chr16:70693545 chr16:70693544 synonymous SNV . 0 20 hm7G_associated_SNPs_26480 0 0 0 0 1 IL34 chr16:70693521 3'AG 70693521 Downstream 24bp 24106 chr18 56819796 56819796 1 + G T UCEC 56819797 + 56819777 56819817 41 GGAGCCGGCCTTTCACAGAGGAGACCTCCTGTTCCTCACAA GGAGCCGGCCTTTCACAGATGAGACCTCCTGTTCCTCACAA < 41bp 0.382257497940078 0.716035661059982 NA NA prediction 0.432071322119963 Functional Gain - SEC11C ENSG00000166562 CDS Human protein_coding chr18:56819797 chr18:56819796 stopgain 0.998 1 20 hm7G_associated_SNPs_26481 0 0 1 0 1 SEC11C chr18:56819768 3'AG 56819768 Downstream 29bp 24107 chr5 115238620 115238620 1 + G T UCEC 115238621 + 115238601 115238641 41 AAATGGTGATGGGGGGAATGGTATTGGAGACAAATATGAAT AAATGGTGATGGGGGGAATTGTATTGGAGACAAATATGAAT < 41bp 0.668998585929449 0.885033300196707 NA NA prediction 0.432069428534516 Functional Gain - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115238621 chr5:115238620 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26482 0 0 1 0 2 AP3S1 chr5:115238582 3'AG 115238582 Downstream 39bp 24108 chr5 115238620 115238620 1 + G T UCEC 115238621 + 115238601 115238641 41 AAATGGTGATGGGGGGAATGGTATTGGAGACAAATATGAAT AAATGGTGATGGGGGGAATTGTATTGGAGACAAATATGAAT < 41bp 0.668998585929449 0.885033300196707 NA NA prediction 0.432069428534516 Functional Gain - AP3S1 ENSG00000177879 CDS Human protein_coding chr5:115238621 chr5:115238620 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26482 0 0 1 0 2 AP3S1 chr5:115238689 5'GT 115238689 Upstream 70bp 24109 chr1 179561895 179561895 1 + G T LUAD 179561896 + 179561876 179561916 41 TCTACCACTCCGAATCCTTGGGTATCGGTCCACTATGGAGC TCTACCACTCCGAATCCTTTGGTATCGGTCCACTATGGAGC < 41bp 0.35680854546703 0.716034502725222 NA NA prediction 0.432069005450445 Functional Gain - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179561896 chr1:179561895 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_26483 0 0 0 0 1 TDRD5 chr1:179561982 5'GT 179561982 Upstream 88bp 24110 chr7 31126150 31126150 1 + G T UCEC 31126151 + 31126131 31126171 41 GGTACACCATCATTGGCTGGGGTAGGTTCCTGGCTGTGGCT GGTACACCATCATTGGCTGTGGTAGGTTCCTGGCTGTGGCT < 41bp 0.361995865130658 0.716014686419668 NA NA prediction 0.432029372839335 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31126151 chr7:31126150 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26485 0 0 0 0 1 ADCYAP1R1 chr7:31126151 5'GT 31126151 Upstream 2bp 24111 chr6 44118317 44118317 1 + C T LGG 44118318 + 44118298 44118338 41 CAGCCTGGACCTCTTCTTCCGCTGGCTCTTTGATAAGAAAT CAGCCTGGACCTCTTCTTCTGCTGGCTCTTTGATAAGAAAT < 41bp 0.508062944329538 0.724061283096569 NA NA prediction 0.431996677534062 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118318 chr6:44118317 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26488 0 0 1 1 2 TMEM63B chr6:44118301 3'AG 44118301 Downstream 17bp 24112 chr6 44118317 44118317 1 + C T LGG 44118318 + 44118298 44118338 41 CAGCCTGGACCTCTTCTTCCGCTGGCTCTTTGATAAGAAAT CAGCCTGGACCTCTTCTTCTGCTGGCTCTTTGATAAGAAAT < 41bp 0.508062944329538 0.724061283096569 NA NA prediction 0.431996677534062 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44118318 chr6:44118317 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26488 0 0 1 1 2 TMEM63B chr6:44118366 5'GT 44118366 Upstream 50bp 24113 chr16 19027819 19027819 1 + G T LUSC 19027820 + 19027800 19027840 41 CTCTCCGAATGGGACCAGTGGAAGCGGTATAGCAGCAAGTC CTCTCCGAATGGGACCAGTTGAAGCGGTATAGCAGCAAGTC < 41bp 0.68763712931025 0.903623841976428 NA NA prediction 0.431973425332355 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19027820 chr16:19027819 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26491 0 0 0 0 1 TMC7 chr16:19027772 3'AG 19027772 Downstream 48bp 24114 chr20 31604896 31604896 1 + G A COAD 31604897 + 31604877 31604917 41 GGGTGTCAATGTCCACCTGGGCACCTTAATTGGTAAGATCT GGGTGTCAATGTCCACCTGAGCACCTTAATTGGTAAGATCT < 41bp 0.49548602340176 0.715981637276193 NA NA prediction 0.431963274552385 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31604897 chr20:31604896 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_26492 0 0 1 0 2 BPIFB2 chr20:31604848 3'AG 31604848 Downstream 49bp 24115 chr20 31604896 31604896 1 + G A COAD 31604897 + 31604877 31604917 41 GGGTGTCAATGTCCACCTGGGCACCTTAATTGGTAAGATCT GGGTGTCAATGTCCACCTGAGCACCTTAATTGGTAAGATCT < 41bp 0.49548602340176 0.715981637276193 NA NA prediction 0.431963274552385 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31604897 chr20:31604896 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_26492 0 0 1 0 2 BPIFB2 chr20:31604908 5'GT 31604908 Upstream 13bp 24116 chr16 1391987 1391987 1 + G T UCEC 1391988 + 1391968 1392008 41 CCTCCCCTGTCCCCACCAGGGATCATGACGACGATGTATCC CCTCCCCTGTCCCCACCAGTGATCATGACGACGATGTATCC < 41bp 0.364027926230773 0.715978671348035 NA NA prediction 0.43195734269607 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391988 chr16:1391987 nonsynonymous SNV 0.795 3 20 hm7G_associated_SNPs_26493 0 0 0 0 2 BAIAP3 chr16:1391987 3'AG 1391987 Downstream 1bp 24117 chr16 1391987 1391987 1 + G T UCEC 1391988 + 1391968 1392008 41 CCTCCCCTGTCCCCACCAGGGATCATGACGACGATGTATCC CCTCCCCTGTCCCCACCAGTGATCATGACGACGATGTATCC < 41bp 0.364027926230773 0.715978671348035 NA NA prediction 0.43195734269607 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391988 chr16:1391987 nonsynonymous SNV 0.795 3 20 hm7G_associated_SNPs_26493 0 0 0 0 2 BAIAP3 chr16:1392064 5'GT 1392064 Upstream 78bp 24118 chr6 43269349 43269349 1 + G A UCEC 43269350 + 43269330 43269370 41 AAAGTGGCCGCCGGGGAACGGGTGGTCCGAAGACCTTCATA AAAGTGGCCGCCGGGGAACAGGTGGTCCGAAGACCTTCATA < 41bp 0.528968790749062 0.744945516919542 NA NA prediction 0.43195345234096 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43269350 chr6:43269349 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_26494 0 0 0 0 2 SLC22A7 chr6:43269321 3'AG 43269321 Downstream 29bp 24119 chr6 43269349 43269349 1 + G A UCEC 43269350 + 43269330 43269370 41 AAAGTGGCCGCCGGGGAACGGGTGGTCCGAAGACCTTCATA AAAGTGGCCGCCGGGGAACAGGTGGTCCGAAGACCTTCATA < 41bp 0.528968790749062 0.744945516919542 NA NA prediction 0.43195345234096 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43269350 chr6:43269349 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_26494 0 0 0 0 2 SLC22A7 chr6:43269430 5'GT 43269430 Upstream 82bp 24120 chr20 61468608 61468608 1 + G A STAD 61468609 + 61468589 61468629 41 TGGGGAGCTGGGAGACCCCGGGCCCAGAGGTGAGTGTTTGA TGGGGAGCTGGGAGACCCCAGGCCCAGAGGTGAGTGTTTGA < 41bp 0.504147281152795 0.720116737504277 NA NA prediction 0.431938912702963 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61468609 chr20:61468608 nonsynonymous SNV 0.709 5 20 hm7G_associated_SNPs_26495 0 0 1 0 1 COL9A3 chr20:61468617 5'GT 61468617 Upstream 10bp 24121 chr8 145725733 145725733 1 + G A SARC 145725734 + 145725714 145725754 41 CCGGAGCCGGCTGCAGGCCGGGGCAGACCTCCATGCCCCCC CCGGAGCCGGCTGCAGGCCAGGGCAGACCTCCATGCCCCCC < 41bp 0.545293292345031 0.761244964659722 NA NA prediction 0.431903344629383 Functional Gain - PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145725734 chr8:145725733 nonsynonymous SNV 0.001 4 20 hm7G_associated_SNPs_26497 0 0 1 0 2 PPP1R16A chr8:145725650 3'AG 145725650 Downstream 84bp 24122 chr8 145725733 145725733 1 + G A SARC 145725734 + 145725714 145725754 41 CCGGAGCCGGCTGCAGGCCGGGGCAGACCTCCATGCCCCCC CCGGAGCCGGCTGCAGGCCAGGGCAGACCTCCATGCCCCCC < 41bp 0.545293292345031 0.761244964659722 NA NA prediction 0.431903344629383 Functional Gain - PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145725734 chr8:145725733 nonsynonymous SNV 0.001 4 20 hm7G_associated_SNPs_26497 0 0 1 0 2 PPP1R16A chr8:145725774 5'GT 145725774 Upstream 42bp 24123 chr22 25623826 25623826 1 + G T LUAD 25623827 + 25623807 25623847 41 GTCTCCATGGCAGCTGGGTGGGCTATGAACAGGCCAACTGC GTCTCCATGGCAGCTGGGTTGGCTATGAACAGGCCAACTGC < 41bp 0.683875082132227 0.899824887459579 NA NA prediction 0.431899610654704 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623827 chr22:25623826 synonymous SNV . 0 20 hm7G_associated_SNPs_26498 0 0 0 0 1 CRYBB2 chr22:25623820 3'AG 25623820 Downstream 7bp 24124 chr11 67188606 67188606 1 + G A rs562422049 67188607 + 67188587 67188627 41 GGTCGGCGCGCTGCCTCATGGAGGGAAAACAGCTGCTGGTG GGTCGGCGCGCTGCCTCATAGAGGGAAAACAGCTGCTGGTG < 41bp 0.497325456174449 0.715937530869633 NA NA prediction 0.431875061739265 Functional Gain - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67188607 chr11:67188606 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_26503 0 0 0 0 1 CARNS1 chr11:67188690 5'GT 67188690 Upstream 85bp 24125 chr3 44952866 44952866 1 + G T OV 44952867 + 44952847 44952887 41 AGTTCTCTTTGGAAAGCCTGGGCATCTCCTCACTACAGACC AGTTCTCTTTGGAAAGCCTTGGCATCTCCTCACTACAGACC < 41bp 0.378126471127576 0.715937022478036 NA NA prediction 0.431874044956073 Functional Gain - TGM4 ENSG00000163810 CDS Human protein_coding chr3:44952867 chr3:44952866 synonymous SNV . 0 20 hm7G_associated_SNPs_26504 0 0 0 0 1 TGM4 chr3:44952898 5'GT 44952898 Upstream 33bp 24126 chr1 43778878 43778878 1 + C T UCEC 43778879 + 43778859 43778899 41 CAGCTGACATGGAAGCACCCGGAGGCTCTGCCTGGGCCAAT CAGCTGACATGGAAGCACCTGGAGGCTCTGCCTGGGCCAAT < 41bp 0.496958622561783 0.715933538060885 NA NA prediction 0.43186707612177 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43778879 chr1:43778878 nonsynonymous SNV 0.867 2 20 hm7G_associated_SNPs_26506 0 0 0 0 1 TIE1 chr1:43778806 3'AG 43778806 Downstream 73bp 24127 chr15 57730244 57730244 1 + G T LIHC 57730245 + 57730225 57730265 41 CATGTGCAGCAGGAATATGGGGTCCATCTGAGACTCGCAAG CATGTGCAGCAGGAATATGTGGTCCATCTGAGACTCGCAAG < 41bp 0.380928633921955 0.715921706101692 NA NA prediction 0.431843412203383 Functional Gain - CGNL1 ENSG00000128849 CDS Human protein_coding chr15:57730245 chr15:57730244 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_26508 0 0 0 0 1 CGNL1 chr15:57730183 3'AG 57730183 Downstream 62bp 24128 chr17 34958541 34958541 1 + G A LUAD 34958542 + 34958522 34958562 41 CGGGACATTCCAGTTCTGCGGCCCAGACGGCAGAAACTGGA CGGGACATTCCAGTTCTGCAGCCCAGACGGCAGAAACTGGA < 41bp 0.52215910869506 0.73807689464659 NA NA prediction 0.431835571903061 Functional Gain - MRM1 ENSG00000129282 CDS Human other chr17:34958542 chr17:34958541 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_26509 0 0 0 0 1 MRM1 chr17:34958605 5'GT 34958605 Upstream 65bp 24129 chr16 2489817 2489817 1 + G T STAD 2489818 + 2489798 2489838 41 TACGCTGCCAAAGGCTGCTGGGAAGCGCAGGTGAGGTGCGG TACGCTGCCAAAGGCTGCTTGGAAGCGCAGGTGAGGTGCGG < 41bp 0.695797515999492 0.911711065004791 NA NA prediction 0.431827098010597 Functional Gain - CCNF ENSG00000162063 CDS Human protein_coding chr16:2489818 chr16:2489817 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26510 0 0 1 0 2 CCNF chr16:2489750 3'AG 2489750 Downstream 68bp 24130 chr16 2489817 2489817 1 + G T STAD 2489818 + 2489798 2489838 41 TACGCTGCCAAAGGCTGCTGGGAAGCGCAGGTGAGGTGCGG TACGCTGCCAAAGGCTGCTTGGAAGCGCAGGTGAGGTGCGG < 41bp 0.695797515999492 0.911711065004791 NA NA prediction 0.431827098010597 Functional Gain - CCNF ENSG00000162063 CDS Human protein_coding chr16:2489818 chr16:2489817 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26510 0 0 1 0 2 CCNF chr16:2489827 5'GT 2489827 Upstream 11bp 24131 chr5 149225444 149225444 1 + C T STAD 149225445 + 149225425 149225465 41 GCTGAGCTACGGAGGGCTCCGGCACTTCTGCTGGCCCAGAT GCTGAGCTACGGAGGGCTCTGGCACTTCTGCTGGCCCAGAT < 41bp 0.496731926166501 0.715909260886172 NA NA prediction 0.431818521772345 Functional Gain - PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149225445 chr5:149225444 nonsynonymous SNV 0.471 2 20 hm7G_associated_SNPs_26511 0 0 0 0 1 PPARGC1B chr5:149225477 5'GT 149225477 Upstream 34bp 24132 chr3 133465289 133465289 1 + G A UCEC 133465290 + 133465270 133465310 41 CGCCGCACCCGGAAGATGAGGCTCGCCGTGGGAGCCCTGCT CGCCGCACCCGGAAGATGAAGCTCGCCGTGGGAGCCCTGCT < 41bp 0.509143854438061 0.725050661265597 NA NA prediction 0.431813613655071 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133465290 chr3:133465289 nonsynonymous SNV 0.950 0 20 hm7G_associated_SNPs_26512 0 0 1 0 1 TF chr3:133465327 5'GT 133465327 Upstream 39bp 24133 chr12 21665278 21665278 1 + G T OV 21665279 + 21665259 21665299 41 TAGAAGAGTGCCAGTCCTTGGATCCCTCCTAAATTTACCTG TAGAAGAGTGCCAGTCCTTTGATCCCTCCTAAATTTACCTG < 41bp 0.387978888297934 0.715904353026404 NA NA prediction 0.431808706052808 Functional Gain - GOLT1B ENSG00000111711 CDS Human protein_coding chr12:21665279 chr12:21665278 stopgain 1.000 1 20 hm7G_associated_SNPs_26513 0 0 1 0 2 GOLT1B chr12:21665229 3'AG 21665229 Downstream 50bp 24134 chr12 21665278 21665278 1 + G T OV 21665279 + 21665259 21665299 41 TAGAAGAGTGCCAGTCCTTGGATCCCTCCTAAATTTACCTG TAGAAGAGTGCCAGTCCTTTGATCCCTCCTAAATTTACCTG < 41bp 0.387978888297934 0.715904353026404 NA NA prediction 0.431808706052808 Functional Gain - GOLT1B ENSG00000111711 CDS Human protein_coding chr12:21665279 chr12:21665278 stopgain 1.000 1 20 hm7G_associated_SNPs_26513 0 0 1 0 2 GOLT1B chr12:21665310 5'GT 21665310 Upstream 33bp 24135 chr19 41312523 41312523 1 + G A UCEC 41312524 + 41312504 41312544 41 GCACGTTGACAATCCCCACGGCGATGGGCGCTGCATCACCT GCACGTTGACAATCCCCACAGCGATGGGCGCTGCATCACCT < 41bp 0.526388892798223 0.742287831256197 NA NA prediction 0.431797876915949 Functional Gain - EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41312524 chr19:41312523 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26515 0 0 1 0 2 EGLN2 chr19:41312460 3'AG 41312460 Downstream 64bp 24136 chr19 41312523 41312523 1 + G A UCEC 41312524 + 41312504 41312544 41 GCACGTTGACAATCCCCACGGCGATGGGCGCTGCATCACCT GCACGTTGACAATCCCCACAGCGATGGGCGCTGCATCACCT < 41bp 0.526388892798223 0.742287831256197 NA NA prediction 0.431797876915949 Functional Gain - EGLN2 ENSG00000269858 CDS Human protein_coding chr19:41312524 chr19:41312523 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26515 0 0 1 0 2 EGLN2 chr19:41312579 5'GT 41312579 Upstream 57bp 24137 chr4 141446613 141446613 1 + G T CESC 141446614 + 141446594 141446634 41 TTTGTGGGAGTTCTTCTATGGGCACTTTTTTCGATTTTGGA TTTGTGGGAGTTCTTCTATTGGCACTTTTTTCGATTTTGGA < 41bp 0.392730146857618 0.715897230989966 NA NA prediction 0.431794461979932 Functional Gain - ELMOD2 ENSG00000179387 CDS Human protein_coding chr4:141446614 chr4:141446613 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26516 0 0 1 0 1 ELMOD2 chr4:141446574 3'AG 141446574 Downstream 40bp 24138 chr19 41594481 41594481 1 + G A SKCM 41594482 + 41594462 41594502 41 GCAGGGGGAAGCTGCCTCCGGGACCCACCCCATTGCCCTTC GCAGGGGGAAGCTGCCTCCAGGACCCACCCCATTGCCCTTC < 41bp 0.550545928364317 0.766440183511764 NA NA prediction 0.431788510294894 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41594482 chr19:41594481 synonymous SNV . 0 20 hm7G_associated_SNPs_26517 0 0 0 0 1 CYP2A13 chr19:41594556 5'GT 41594556 Upstream 76bp 24139 chr12 117348955 117348955 1 + G T rs535655795 117348956 + 117348936 117348976 41 GCCGAGAGGCGGGCTCGGCGGCCGGAGGTGGGCTCCGGGCG GCCGAGAGGCGGGCTCGGCTGCCGGAGGTGGGCTCCGGGCG < 41bp 0.684609539219624 0.90049963819455 NA NA prediction 0.431780197949851 Functional Gain - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117348956 chr12:117348955 nonsynonymous SNV 0.069 0 20 hm7G_associated_SNPs_26520 0 0 1 0 1 FBXW8 chr12:117348962 5'GT 117348962 Upstream 8bp 24140 chr8 20068135 20068135 1 + C T COAD 20068136 + 20068116 20068156 41 GAGGTCCTGTTGTACTGGCCGAAGACTTCCTTGATATCATG GAGGTCCTGTTGTACTGGCTGAAGACTTCCTTGATATCATG < 41bp 0.500910888709118 0.716800319106447 NA NA prediction 0.431778860794658 Functional Gain - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20068136 chr8:20068135 synonymous SNV . 0 20 hm7G_associated_SNPs_26521 0 0 1 0 2 ATP6V1B2 chr8:20068080 3'AG 20068080 Downstream 56bp 24141 chr8 20068135 20068135 1 + C T COAD 20068136 + 20068116 20068156 41 GAGGTCCTGTTGTACTGGCCGAAGACTTCCTTGATATCATG GAGGTCCTGTTGTACTGGCTGAAGACTTCCTTGATATCATG < 41bp 0.500910888709118 0.716800319106447 NA NA prediction 0.431778860794658 Functional Gain - ATP6V1B2 ENSG00000147416 CDS Human protein_coding chr8:20068136 chr8:20068135 synonymous SNV . 0 20 hm7G_associated_SNPs_26521 0 0 1 0 2 ATP6V1B2 chr8:20068157 5'GT 20068157 Upstream 23bp 24142 chr2 15742715 15742715 1 + G T CESC 15742716 + 15742696 15742736 41 GTCAAAGCAGAGAAGTAAAGGAATGGCATGGGTGTAGAGCT GTCAAAGCAGAGAAGTAAATGAATGGCATGGGTGTAGAGCT < 41bp 0.680482026968112 0.896362511360158 NA NA prediction 0.431760968784091 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15742716 chr2:15742715 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_26524 0 0 1 0 2 DDX1 chr2:15742672 3'AG 15742672 Downstream 44bp 24143 chr2 15742715 15742715 1 + G T CESC 15742716 + 15742696 15742736 41 GTCAAAGCAGAGAAGTAAAGGAATGGCATGGGTGTAGAGCT GTCAAAGCAGAGAAGTAAATGAATGGCATGGGTGTAGAGCT < 41bp 0.680482026968112 0.896362511360158 NA NA prediction 0.431760968784091 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15742716 chr2:15742715 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_26524 0 0 1 0 2 DDX1 chr2:15742755 5'GT 15742755 Upstream 41bp 24144 chrX 9912728 9912728 1 + G A rs148547697 9912729 + 9912709 9912749 41 AGCTGCAGGTGCTCCGGGAGGCCCGCGAGAGCCTGCTGGAG AGCTGCAGGTGCTCCGGGAAGCCCGCGAGAGCCTGCTGGAG < 41bp 0.527457624326326 0.743333731667004 NA NA prediction 0.431752214681357 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912729 chrX:9912728 synonymous SNV . 0 20 hm7G_associated_SNPs_26526 0 0 0 0 2 SHROOM2 chrX:9912681 3'AG 9912681 Downstream 48bp 24145 chrX 9912728 9912728 1 + G A rs148547697 9912729 + 9912709 9912749 41 AGCTGCAGGTGCTCCGGGAGGCCCGCGAGAGCCTGCTGGAG AGCTGCAGGTGCTCCGGGAAGCCCGCGAGAGCCTGCTGGAG < 41bp 0.527457624326326 0.743333731667004 NA NA prediction 0.431752214681357 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912729 chrX:9912728 synonymous SNV . 0 20 hm7G_associated_SNPs_26526 0 0 0 0 2 SHROOM2 chrX:9912684 3'AG 9912684 Downstream 45bp 24146 chr7 769422 769422 1 + G A SKCM 769423 + 769403 769443 41 AGTGATCCATTTTGGCAACGGGAAGTCCGTGGACGACGTGC AGTGATCCATTTTGGCAACAGGAAGTCCGTGGACGACGTGC < 41bp 0.510896051310889 0.726755043652227 NA NA prediction 0.431717984682674 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:769423 chr7:769422 nonsynonymous SNV 0.666 3 20 hm7G_associated_SNPs_26529 0 0 1 0 2 DNAAF5 chr7:769362 3'AG 769362 Downstream 61bp 24147 chr7 769422 769422 1 + G A SKCM 769423 + 769403 769443 41 AGTGATCCATTTTGGCAACGGGAAGTCCGTGGACGACGTGC AGTGATCCATTTTGGCAACAGGAAGTCCGTGGACGACGTGC < 41bp 0.510896051310889 0.726755043652227 NA NA prediction 0.431717984682674 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:769423 chr7:769422 nonsynonymous SNV 0.666 3 20 hm7G_associated_SNPs_26529 0 0 1 0 2 DNAAF5 chr7:769484 5'GT 769484 Upstream 63bp 24148 chr12 8196634 8196634 1 + G T LUSC 8196635 + 8196615 8196655 41 AGCCTCACTGCCTCCTGAGGGGAATCCGCAGATGTCACTTC AGCCTCACTGCCTCCTGAGTGGAATCCGCAGATGTCACTTC < 41bp 0.36243356308892 0.715856347079734 NA NA prediction 0.431712694159468 Functional Gain - FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196635 chr12:8196634 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_26530 0 0 1 0 2 FOXJ2 chr12:8196547 3'AG 8196547 Downstream 88bp 24149 chr12 8196634 8196634 1 + G T LUSC 8196635 + 8196615 8196655 41 AGCCTCACTGCCTCCTGAGGGGAATCCGCAGATGTCACTTC AGCCTCACTGCCTCCTGAGTGGAATCCGCAGATGTCACTTC < 41bp 0.36243356308892 0.715856347079734 NA NA prediction 0.431712694159468 Functional Gain - FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196635 chr12:8196634 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_26530 0 0 1 0 2 FOXJ2 chr12:8196687 5'GT 8196687 Upstream 54bp 24150 chrX 40460121 40460121 1 + G T UCEC 40460122 + 40460102 40460142 41 AGACAAGGACTATCCTTGAGGCAAAACAAGCGGTGAGTATA AGACAAGGACTATCCTTGATGCAAAACAAGCGGTGAGTATA < 41bp 0.662707204287426 0.87856247441631 NA NA prediction 0.431710540257768 Functional Gain - ATP6AP2 ENSG00000182220 CDS Human protein_coding chrX:40460122 chrX:40460121 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26531 0 0 1 0 1 ATP6AP2 chrX:40460133 5'GT 40460133 Upstream 13bp 24151 chr16 68847221 68847221 1 + G T LGG 68847222 + 68847202 68847242 41 TCTTTGCTCTGCAGTACAAGGGTCAGGTGCCTGAGAACGAG TCTTTGCTCTGCAGTACAATGGTCAGGTGCCTGAGAACGAG < 41bp 0.690138513992202 0.905992977173639 NA NA prediction 0.431708926362875 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68847222 chr16:68847221 nonsynonymous SNV 0.769 0 20 hm7G_associated_SNPs_26532 0 0 0 0 1 CDH1 chr16:68847216 3'AG 68847216 Downstream 6bp 24152 chr4 8620164 8620164 1 + G A GBM 8620165 + 8620145 8620185 41 GGTCTCTTCAGGTGCACCGGGGCATCAAAGGTGTGGTGACA GGTCTCTTCAGGTGCACCGAGGCATCAAAGGTGTGGTGACA < 41bp 0.488320721669796 0.715853372927084 NA NA prediction 0.431706745854167 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8620165 chr4:8620164 synonymous SNV . 0 20 hm7G_associated_SNPs_26533 0 0 0 1 2 CPZ chr4:8620156 3'AG 8620156 Downstream 9bp 24153 chr4 8620164 8620164 1 + G A GBM 8620165 + 8620145 8620185 41 GGTCTCTTCAGGTGCACCGGGGCATCAAAGGTGTGGTGACA GGTCTCTTCAGGTGCACCGAGGCATCAAAGGTGTGGTGACA < 41bp 0.488320721669796 0.715853372927084 NA NA prediction 0.431706745854167 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8620165 chr4:8620164 synonymous SNV . 0 20 hm7G_associated_SNPs_26533 0 0 0 1 2 CPZ chr4:8620255 5'GT 8620255 Upstream 92bp 24154 chr19 46733392 46733392 1 + G A SKCM 46733393 + 46733373 46733413 41 GCCATTTTCTGCATCTCCAGGCTCCTCTGCTCACACGGAGC GCCATTTTCTGCATCTCCAAGCTCCTCTGCTCACACGGAGC < 41bp 0.541857590783937 0.757708948363053 NA NA prediction 0.431702715158232 Functional Gain - IGFL1 ENSG00000188293 CDS Human protein_coding chr19:46733393 chr19:46733392 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_26534 0 0 0 0 2 IGFL1 chr19:46733365 3'AG 46733365 Downstream 28bp 24155 chr19 46733392 46733392 1 + G A SKCM 46733393 + 46733373 46733413 41 GCCATTTTCTGCATCTCCAGGCTCCTCTGCTCACACGGAGC GCCATTTTCTGCATCTCCAAGCTCCTCTGCTCACACGGAGC < 41bp 0.541857590783937 0.757708948363053 NA NA prediction 0.431702715158232 Functional Gain - IGFL1 ENSG00000188293 CDS Human protein_coding chr19:46733393 chr19:46733392 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_26534 0 0 0 0 2 IGFL1 chr19:46733418 5'GT 46733418 Upstream 27bp 24156 chr16 68725741 68725741 1 + C T UCEC 68725742 + 68725722 68725762 41 TGATCAGGGCCACTGTGTGCGACTGCCATGGCCATGTCGAA TGATCAGGGCCACTGTGTGTGACTGCCATGGCCATGTCGAA < 41bp 0.500189087627847 0.716038943735176 NA NA prediction 0.431699712214659 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68725742 chr16:68725741 synonymous SNV . 0 20 hm7G_associated_SNPs_26536 0 0 0 0 1 CDH3 chr16:68725829 5'GT 68725829 Upstream 89bp 24157 chr6 15501592 15501592 1 + G T UCEC 15501593 + 15501573 15501613 41 AAGAAGTGGTCAAGGAAGAGGAGGAGGACAAAGGCGTCCTC AAGAAGTGGTCAAGGAAGATGAGGAGGACAAAGGCGTCCTC < 41bp 0.377839322327189 0.715849381584946 NA NA prediction 0.431698763169891 Functional Gain - JARID2 ENSG00000008083 CDS Human protein_coding chr6:15501593 chr6:15501592 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_26537 0 0 0 0 1 JARID2 chr6:15501640 5'GT 15501640 Upstream 49bp 24158 chr14 24586232 24586232 1 + G T LIHC 24586233 + 24586213 24586253 41 AGCTTGGGATGGTCGTCTTGGGGATCGATACAACCCACCTG AGCTTGGGATGGTCGTCTTTGGGATCGATACAACCCACCTG < 41bp 0.36153497324185 0.715846394071992 NA NA prediction 0.431692788143984 Functional Gain - DCAF11 ENSG00000100897 CDS Human protein_coding chr14:24586233 chr14:24586232 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26539 0 0 1 0 2 DCAF11 chr14:24586181 3'AG 24586181 Downstream 52bp 24159 chr14 24586232 24586232 1 + G T LIHC 24586233 + 24586213 24586253 41 AGCTTGGGATGGTCGTCTTGGGGATCGATACAACCCACCTG AGCTTGGGATGGTCGTCTTTGGGATCGATACAACCCACCTG < 41bp 0.36153497324185 0.715846394071992 NA NA prediction 0.431692788143984 Functional Gain - DCAF11 ENSG00000100897 CDS Human protein_coding chr14:24586233 chr14:24586232 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26539 0 0 1 0 2 DCAF11 chr14:24586253 5'GT 24586253 Upstream 22bp 24160 chr16 1549256 1549256 1 + G A SKCM 1549257 + 1549237 1549277 41 AGGTCCTTTCGAGACTGCTGGGGAACCTGGTGGTGAAGAAC AGGTCCTTTCGAGACTGCTAGGGAACCTGGTGGTGAAGAAC < 41bp 0.526841887469716 0.742686829148638 NA NA prediction 0.431689883357844 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1549257 chr16:1549256 synonymous SNV . 0 20 hm7G_associated_SNPs_26540 0 0 1 0 2 TELO2 chr16:1549232 3'AG 1549232 Downstream 25bp 24161 chr16 1549256 1549256 1 + G A SKCM 1549257 + 1549237 1549277 41 AGGTCCTTTCGAGACTGCTGGGGAACCTGGTGGTGAAGAAC AGGTCCTTTCGAGACTGCTAGGGAACCTGGTGGTGAAGAAC < 41bp 0.526841887469716 0.742686829148638 NA NA prediction 0.431689883357844 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1549257 chr16:1549256 synonymous SNV . 0 20 hm7G_associated_SNPs_26540 0 0 1 0 2 TELO2 chr16:1549334 5'GT 1549334 Upstream 79bp 24162 chr19 15636311 15636311 1 + G A SKCM 15636312 + 15636292 15636332 41 TTCTACATCACCTGCCGCCGGCTGCGCTGCTTCCCCCAGCC TTCTACATCACCTGCCGCCAGCTGCGCTGCTTCCCCCAGCC < 41bp 0.556628756375082 0.772467969484704 NA NA prediction 0.431678426219244 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15636312 chr19:15636311 nonsynonymous SNV 0.668 1 20 hm7G_associated_SNPs_26544 0 0 0 0 1 CYP4F22 chr19:15636369 5'GT 15636369 Upstream 59bp 24163 chr6 155465783 155465783 1 + G T LUAD 155465784 + 155465764 155465804 41 CCTATGGGAAGAATTCCATGGATCAGAGCAGTGCCCCTCGG CCTATGGGAAGAATTCCATTGATCAGAGCAGTGCCCCTCGG < 41bp 0.367347230986131 0.715823945146346 NA NA prediction 0.431647890292691 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155465784 chr6:155465783 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_26549 0 0 1 0 1 TIAM2 chr6:155465740 3'AG 155465740 Downstream 44bp 24164 chr17 26818764 26818764 1 + G A COAD 26818765 + 26818745 26818785 41 CAGGCTCTTCCCCCAAAACGGCAACGTGGTGAACTTCGCCT CAGGCTCTTCCCCCAAAACAGCAACGTGGTGAACTTCGCCT < 41bp 0.547071646047979 0.762893053325704 NA NA prediction 0.43164281455545 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26818765 chr17:26818764 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_26551 0 0 0 0 1 SLC13A2 chr17:26818748 3'AG 26818748 Downstream 17bp 24165 chr16 67034869 67034869 1 + G T UCEC 67034870 + 67034850 67034890 41 CTGGTGTTTCTGCAGCACAGGCTCGGCATCTTCGGCTTCCT CTGGTGTTTCTGCAGCACATGCTCGGCATCTTCGGCTTCCT < 41bp 0.361269780389485 0.715817817633222 NA NA prediction 0.431635635266443 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67034870 chr16:67034869 nonsynonymous SNV 0.021 4 20 hm7G_associated_SNPs_26553 0 0 0 0 3 CES4A chr16:67034893 5'GT 67034893 Upstream 25bp 24166 chr16 67034869 67034869 1 + G T UCEC 67034870 + 67034850 67034890 41 CTGGTGTTTCTGCAGCACAGGCTCGGCATCTTCGGCTTCCT CTGGTGTTTCTGCAGCACATGCTCGGCATCTTCGGCTTCCT < 41bp 0.361269780389485 0.715817817633222 NA NA prediction 0.431635635266443 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67034870 chr16:67034869 nonsynonymous SNV 0.021 4 20 hm7G_associated_SNPs_26553 0 0 0 0 3 CES4A chr16:67034905 5'GT 67034905 Upstream 37bp 24167 chr16 67034869 67034869 1 + G T UCEC 67034870 + 67034850 67034890 41 CTGGTGTTTCTGCAGCACAGGCTCGGCATCTTCGGCTTCCT CTGGTGTTTCTGCAGCACATGCTCGGCATCTTCGGCTTCCT < 41bp 0.361269780389485 0.715817817633222 NA NA prediction 0.431635635266443 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67034870 chr16:67034869 nonsynonymous SNV 0.021 4 20 hm7G_associated_SNPs_26553 0 0 0 0 3 CES4A chr16:67034949 5'GT 67034949 Upstream 81bp 24168 chr15 42682219 42682219 1 + G T LUAD 42682220 + 42682200 42682240 41 GGGAGTTGATTGCACGGATGGTAAGGAATATGGATAACTCA GGGAGTTGATTGCACGGATTGTAAGGAATATGGATAACTCA < 41bp 0.395988159240314 0.715802033356358 NA NA prediction 0.431604066712716 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42682220 chr15:42682219 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26556 0 0 0 0 2 CAPN3 chr15:42682151 3'AG 42682151 Downstream 69bp 24169 chr15 42682219 42682219 1 + G T LUAD 42682220 + 42682200 42682240 41 GGGAGTTGATTGCACGGATGGTAAGGAATATGGATAACTCA GGGAGTTGATTGCACGGATTGTAAGGAATATGGATAACTCA < 41bp 0.395988159240314 0.715802033356358 NA NA prediction 0.431604066712716 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42682220 chr15:42682219 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26556 0 0 0 0 2 CAPN3 chr15:42682294 5'GT 42682294 Upstream 76bp 24170 chr11 71932021 71932021 1 + G A rs116699117 71932022 + 71932002 71932042 41 GGGACCACTGCGGCAAGATGGAGCCCGCCTGCAAGCGCCAC GGGACCACTGCGGCAAGATAGAGCCCGCCTGCAAGCGCCAC < 41bp 0.498396045228972 0.71579983741138 NA NA prediction 0.431599674822761 Functional Gain - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71932022 chr11:71932021 nonsynonymous SNV 0.444 0 20 hm7G_associated_SNPs_26557 0 0 0 0 1 FOLR2 chr11:71932102 5'GT 71932102 Upstream 82bp 24171 chr12 8610506 8610506 1 + G T STAD 8610507 + 8610487 8610527 41 TGGACAGAGAAAAGAGGCTGGTTGTCCCTGAGACTCTGGTC TGGACAGAGAAAAGAGGCTTGTTGTCCCTGAGACTCTGGTC < 41bp 0.394365838373296 0.715795295909109 NA NA prediction 0.431590591818218 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8610507 chr12:8610506 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_26559 0 0 0 0 2 CLEC6A chr12:8610494 3'AG 8610494 Downstream 13bp 24172 chr12 8610506 8610506 1 + G T STAD 8610507 + 8610487 8610527 41 TGGACAGAGAAAAGAGGCTGGTTGTCCCTGAGACTCTGGTC TGGACAGAGAAAAGAGGCTTGTTGTCCCTGAGACTCTGGTC < 41bp 0.394365838373296 0.715795295909109 NA NA prediction 0.431590591818218 Functional Gain - CLEC6A ENSG00000205846 CDS Human protein_coding chr12:8610507 chr12:8610506 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_26559 0 0 0 0 2 CLEC6A chr12:8610583 5'GT 8610583 Upstream 78bp 24173 chr19 19649214 19649214 1 + G A SKCM 19649215 + 19649195 19649235 41 GTCGCTGCGCACCTGGCGGGGGCCCGAGGTGAGGCGCCTCC GTCGCTGCGCACCTGGCGGAGGCCCGAGGTGAGGCGCCTCC < 41bp 0.48386107905563 0.71579459301744 NA NA prediction 0.43158918603488 Functional Gain - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19649215 chr19:19649214 nonsynonymous SNV 0.073 0 20 hm7G_associated_SNPs_26560 0 0 0 0 1 CILP2 chr19:19649222 5'GT 19649222 Upstream 9bp 24174 chr1 19652872 19652872 1 + G A rs77915465 19652873 + 19652853 19652893 41 CGCTCCTGTCCGTGGAGTCGGGCAGCAAGGTGAGGCGTGGG CGCTCCTGTCCGTGGAGTCAGGCAGCAAGGTGAGGCGTGGG < 41bp 0.518969153072692 0.734760506758622 NA NA prediction 0.431582707371861 Functional Gain - PQLC2 ENSG00000040487 CDS Human protein_coding chr1:19652873 chr1:19652872 synonymous SNV . 0 20 hm7G_associated_SNPs_26561 0 0 1 0 1 PQLC2 chr1:19652881 5'GT 19652881 Upstream 10bp 24175 chr8 11412914 11412914 1 + G T COAD 11412915 + 11412895 11412935 41 CGCAGAATCCCTGGGCCCAGGATGAATGGGAGATCCCCCGG CGCAGAATCCCTGGGCCCATGATGAATGGGAGATCCCCCGG < 41bp 0.698226787865281 0.914006531594124 NA NA prediction 0.431559487457686 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11412915 chr8:11412914 nonsynonymous SNV 0.864 1 20 hm7G_associated_SNPs_26565 0 0 0 0 2 BLK chr8:11412841 3'AG 11412841 Downstream 74bp 24176 chr8 11412914 11412914 1 + G T COAD 11412915 + 11412895 11412935 41 CGCAGAATCCCTGGGCCCAGGATGAATGGGAGATCCCCCGG CGCAGAATCCCTGGGCCCATGATGAATGGGAGATCCCCCGG < 41bp 0.698226787865281 0.914006531594124 NA NA prediction 0.431559487457686 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11412915 chr8:11412914 nonsynonymous SNV 0.864 1 20 hm7G_associated_SNPs_26565 0 0 0 0 2 BLK chr8:11412993 5'GT 11412993 Upstream 80bp 24177 chr4 981688 981688 1 + G A rs564306004 981689 + 981669 981709 41 GGGCGCCGTCCCTCACCGCGGCATCAAGCAGGTCCGGACCC GGGCGCCGTCCCTCACCGCAGCATCAAGCAGGTCCGGACCC < 41bp 0.486227207259224 0.715774209714931 NA NA prediction 0.431548419429862 Functional Gain - IDUA ENSG00000127415 CDS Human protein_coding chr4:981689 chr4:981688 nonsynonymous SNV 0.923 5 20 hm7G_associated_SNPs_26566 0 0 1 0 2 IDUA chr4:981597 3'AG 981597 Downstream 92bp 24178 chr4 981688 981688 1 + G A rs564306004 981689 + 981669 981709 41 GGGCGCCGTCCCTCACCGCGGCATCAAGCAGGTCCGGACCC GGGCGCCGTCCCTCACCGCAGCATCAAGCAGGTCCGGACCC < 41bp 0.486227207259224 0.715774209714931 NA NA prediction 0.431548419429862 Functional Gain - IDUA ENSG00000127415 CDS Human protein_coding chr4:981689 chr4:981688 nonsynonymous SNV 0.923 5 20 hm7G_associated_SNPs_26566 0 0 1 0 2 IDUA chr4:981737 5'GT 981737 Upstream 50bp 24179 chr11 120099623 120099623 1 + G A LUSC 120099624 + 120099604 120099644 41 TGCCCAAGGCCTCAGAGCAGGCGGAGCTGCCTCGCTGCAGG TGCCCAAGGCCTCAGAGCAAGCGGAGCTGCCTCGCTGCAGG < 41bp 0.513351154069933 0.729120638525327 NA NA prediction 0.431538968910788 Functional Gain - OAF ENSG00000184232 CDS Human protein_coding chr11:120099624 chr11:120099623 synonymous SNV . 0 20 hm7G_associated_SNPs_26567 0 0 1 0 1 OAF chr11:120099577 3'AG 120099577 Downstream 47bp 24180 chr5 85588962 85588962 1 + G T UCEC 85588963 + 85588943 85588983 41 GTTTTAGAGCCCTCTCTGGGGATGAAGAACCCTCCCCAGCT GTTTTAGAGCCCTCTCTGGTGATGAAGAACCCTCCCCAGCT < 41bp 0.422960220513057 0.715759890923834 NA NA prediction 0.431519781847669 Functional Gain - NBPF22P ENSG00000205449 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr5:85588963 chr5:85588962 . . 0 20 hm7G_associated_SNPs_26568 0 0 0 0 1 NBPF22P chr5:85588938 3'AG 85588938 Downstream 25bp 24181 chr14 76906068 76906068 1 + G T SKCM 76906069 + 76906049 76906089 41 CCTCCTGCGAGGCTTGCAAGGCCTTCTTCAAGAGGACTATC CCTCCTGCGAGGCTTGCAATGCCTTCTTCAAGAGGACTATC < 41bp 0.365350923190452 0.715756171744428 NA NA prediction 0.431512343488857 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76906069 chr14:76906068 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_26569 0 0 0 0 1 ESRRB chr14:76906093 5'GT 76906093 Upstream 26bp 24182 chr7 128457885 128457885 1 + G T LUSC 128457886 + 128457866 128457906 41 GTCATCTCGGCTTTGCTCTGGTGCTGGTGGGCTGAGACGTC GTCATCTCGGCTTTGCTCTTGTGCTGGTGGGCTGAGACGTC < 41bp 0.386593124784013 0.715754739900929 NA NA prediction 0.431509479801857 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128457886 chr7:128457885 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26570 0 0 1 0 2 CCDC136 chr7:128457812 3'AG 128457812 Downstream 74bp 24183 chr7 128457885 128457885 1 + G T LUSC 128457886 + 128457866 128457906 41 GTCATCTCGGCTTTGCTCTGGTGCTGGTGGGCTGAGACGTC GTCATCTCGGCTTTGCTCTTGTGCTGGTGGGCTGAGACGTC < 41bp 0.386593124784013 0.715754739900929 NA NA prediction 0.431509479801857 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128457886 chr7:128457885 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26570 0 0 1 0 2 CCDC136 chr7:128457918 5'GT 128457918 Upstream 34bp 24184 chr4 25676182 25676182 1 + C T HNSC 25676183 + 25676163 25676203 41 TCACGCTGGGCTCCAACATCGGCACCACCACCACCGCCATC TCACGCTGGGCTCCAACATTGGCACCACCACCACCGCCATC < 41bp 0.505763136009002 0.72151420123636 NA NA prediction 0.431502130454717 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25676183 chr4:25676182 synonymous SNV . 0 20 hm7G_associated_SNPs_26571 0 0 0 0 2 SLC34A2 chr4:25676127 3'AG 25676127 Downstream 56bp 24185 chr4 25676182 25676182 1 + C T HNSC 25676183 + 25676163 25676203 41 TCACGCTGGGCTCCAACATCGGCACCACCACCACCGCCATC TCACGCTGGGCTCCAACATTGGCACCACCACCACCGCCATC < 41bp 0.505763136009002 0.72151420123636 NA NA prediction 0.431502130454717 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25676183 chr4:25676182 synonymous SNV . 0 20 hm7G_associated_SNPs_26571 0 0 0 0 2 SLC34A2 chr4:25676251 5'GT 25676251 Upstream 70bp 24186 chr2 220500412 220500412 1 + G A rs55910611 220500413 + 220500393 220500433 41 AGAACTGTCTTTGGAGTTGGGGGGCTCTGAAGCAACCCCTG AGAACTGTCTTTGGAGTTGAGGGGCTCTGAAGCAACCCCTG < 41bp 0.522088315698458 0.737830965302336 NA NA prediction 0.431485299207756 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220500413 chr2:220500412 nonsynonymous SNV 0.878 0 20 hm7G_associated_SNPs_26572 0 0 0 0 1 SLC4A3 chr2:220500395 3'AG 220500395 Downstream 18bp 24187 chr17 7155897 7155897 1 + G A rs150249029 7155898 + 7155878 7155918 41 CTCGCTGTTGGCCTTGGGCGGCCTGGTGCTGCTTCGGGGTG CTCGCTGTTGGCCTTGGGCAGCCTGGTGCTGCTTCGGGGTG < 41bp 0.503619728542844 0.71935791824725 NA NA prediction 0.431476379408811 Functional Gain - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7155898 chr17:7155897 nonsynonymous SNV 0.619 4 20 hm7G_associated_SNPs_26573 0 0 1 0 1 ELP5 chr17:7155915 5'GT 7155915 Upstream 19bp 24188 chr13 114502358 114502358 1 + G A rs146672834 114502359 + 114502339 114502379 41 TGCCAGTTTTACTCCAGTGGGGTGGGGTACTTGTACGATGT TGCCAGTTTTACTCCAGTGAGGTGGGGTACTTGTACGATGT < 41bp 0.500088807573347 0.715825263859876 NA NA prediction 0.431472912573058 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114502359 chr13:114502358 nonsynonymous SNV 0.267 0 20 hm7G_associated_SNPs_26574 0 0 0 0 2 TMEM255B chr13:114502312 3'AG 114502312 Downstream 47bp 24189 chr13 114502358 114502358 1 + G A rs146672834 114502359 + 114502339 114502379 41 TGCCAGTTTTACTCCAGTGGGGTGGGGTACTTGTACGATGT TGCCAGTTTTACTCCAGTGAGGTGGGGTACTTGTACGATGT < 41bp 0.500088807573347 0.715825263859876 NA NA prediction 0.431472912573058 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114502359 chr13:114502358 nonsynonymous SNV 0.267 0 20 hm7G_associated_SNPs_26574 0 0 0 0 2 TMEM255B chr13:114502392 5'GT 114502392 Upstream 35bp 24190 chr11 9749701 9749701 1 + G T UCEC 9749702 + 9749682 9749722 41 ATGTGAGTGAGGATCTGAAGGATAAGAAAGGAGACATTCTC ATGTGAGTGAGGATCTGAATGATAAGAAAGGAGACATTCTC < 41bp 0.683195020791349 0.898931053123048 NA NA prediction 0.431472064663398 Functional Gain - SWAP70 ENSG00000133789 CDS Human protein_coding chr11:9749702 chr11:9749701 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_26575 0 0 1 0 1 SWAP70 chr11:9749746 5'GT 9749746 Upstream 46bp 24191 chr6 26598290 26598290 1 + G T UCEC 26598291 + 26598271 26598311 41 GTCTACACAACACGCCTATGGGTGCCCGCAGGCGCAGCCCC GTCTACACAACACGCCTATTGGTGCCCGCAGGCGCAGCCCC < 41bp 0.693988913069625 0.909710442193043 NA NA prediction 0.431443058246836 Functional Gain - ABT1 ENSG00000146109 CDS Human protein_coding chr6:26598291 chr6:26598290 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26577 0 0 1 0 1 ABT1 chr6:26598338 5'GT 26598338 Upstream 49bp 24192 chr7 130020367 130020367 1 + G A LGG 130020368 + 130020348 130020388 41 CTCCCGGCAGCAGCATGCGGGGGTTGCTGGTGTTGAGTGTC CTCCCGGCAGCAGCATGCGAGGGTTGCTGGTGTTGAGTGTC < 41bp 0.518739663689941 0.734459002462042 NA NA prediction 0.431438677544202 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130020368 chr7:130020367 synonymous SNV . 0 20 hm7G_associated_SNPs_26578 0 0 0 0 1 CPA1 chr7:130020426 5'GT 130020426 Upstream 60bp 24193 chr19 1005535 1005535 1 + G A SKCM 1005536 + 1005516 1005556 41 GACCTTCGAGGAGCTGTCGGGGATCCACGACCCCAAGGTGG GACCTTCGAGGAGCTGTCGAGGATCCACGACCCCAAGGTGG < 41bp 0.528588056678398 0.744297269816763 NA NA prediction 0.431418426276731 Functional Gain - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1005536 chr19:1005535 nonsynonymous SNV 0.686 4 20 hm7G_associated_SNPs_26582 0 0 0 0 1 GRIN3B chr19:1005552 5'GT 1005552 Upstream 18bp 24194 chr11 113140941 113140941 1 - C T rs35515801 113140940 - 113140920 113140960 41 GGATGCCCACGATGGCCCCGGTGCTCAGGCCTGAGGTGGGG GGATGCCCACGATGGCCCCAGTGCTCAGGCCTGAGGTGGGG < 41bp 0.509933743418352 0.725635997874223 NA NA prediction 0.431404508911741 Functional Gain - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113140940 chr11:113140941 synonymous SNV . 0 20 hm7G_associated_SNPs_26585 0 0 0 0 1 NCAM1 chr11:113140926 5'GT 113140926 Upstream 16bp 24195 chr11 120984388 120984388 1 + G T LUAD 120984389 + 120984369 120984409 41 CTGGGCATTTAAAGTTGATGGAAAGGAAATTGACCCAGCCA CTGGGCATTTAAAGTTGATTGAAAGGAAATTGACCCAGCCA < 41bp 0.367560910343018 0.715696869136173 NA NA prediction 0.431393738272347 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120984389 chr11:120984388 stopgain 0.998 1 20 hm7G_associated_SNPs_26586 0 0 0 0 1 TECTA chr11:120984427 5'GT 120984427 Upstream 40bp 24196 chr17 45351805 45351805 1 + C T COAD 45351806 + 45351786 45351826 41 GCCCAACATCTGTACCACGCGAGGTGTGAGCTCCTGCCAGC GCCCAACATCTGTACCACGTGAGGTGTGAGCTCCTGCCAGC < 41bp 0.50215019568296 0.717842306948056 NA NA prediction 0.431384222530191 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45351806 chr17:45351805 stopgain 0.983 1 20 hm7G_associated_SNPs_26587 0 0 0 0 2 ITGB3 chr17:45351785 3'AG 45351785 Downstream 21bp 24197 chr17 45351805 45351805 1 + C T COAD 45351806 + 45351786 45351826 41 GCCCAACATCTGTACCACGCGAGGTGTGAGCTCCTGCCAGC GCCCAACATCTGTACCACGTGAGGTGTGAGCTCCTGCCAGC < 41bp 0.50215019568296 0.717842306948056 NA NA prediction 0.431384222530191 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45351806 chr17:45351805 stopgain 0.983 1 20 hm7G_associated_SNPs_26587 0 0 0 0 2 ITGB3 chr17:45351870 5'GT 45351870 Upstream 66bp 24198 chr1 22986100 22986100 1 + G A UCEC 22986101 + 22986081 22986121 41 TGGGACACCTGGCCCCGATGGCCAACCTGGGACCCCAGGGA TGGGACACCTGGCCCCGATAGCCAACCTGGGACCCCAGGGA < 41bp 0.550847915224974 0.76652800454197 NA NA prediction 0.43136017863399 Functional Gain - C1QB ENSG00000173369 CDS Human protein_coding chr1:22986101 chr1:22986100 nonsynonymous SNV 0.454 5 20 hm7G_associated_SNPs_26590 0 0 0 0 1 C1QB chr1:22986136 5'GT 22986136 Upstream 37bp 24199 chrX 153694361 153694361 1 + G A SKCM 153694362 + 153694342 153694382 41 GCCTCTTGTCCCGAGAGGTGGGCCTGCGGGTGGCTGGCGTG GCCTCTTGTCCCGAGAGGTAGGCCTGCGGGTGGCTGGCGTG < 41bp 0.55138433332765 0.767062082852946 NA NA prediction 0.431355499050591 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153694362 chrX:153694361 synonymous SNV . 0 20 hm7G_associated_SNPs_26592 0 0 1 0 2 PLXNA3 chrX:153694278 3'AG 153694278 Downstream 84bp 24200 chrX 153694361 153694361 1 + G A SKCM 153694362 + 153694342 153694382 41 GCCTCTTGTCCCGAGAGGTGGGCCTGCGGGTGGCTGGCGTG GCCTCTTGTCCCGAGAGGTAGGCCTGCGGGTGGCTGGCGTG < 41bp 0.55138433332765 0.767062082852946 NA NA prediction 0.431355499050591 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153694362 chrX:153694361 synonymous SNV . 0 20 hm7G_associated_SNPs_26592 0 0 1 0 2 PLXNA3 chrX:153694423 5'GT 153694423 Upstream 63bp 24201 chr12 49935463 49935463 1 + G A LUAD 49935464 + 49935444 49935484 41 ACCCATAAAGAATGAGAAAGGGGAGGTGGCTCTCTTCCTAG ACCCATAAAGAATGAGAAAAGGGAGGTGGCTCTCTTCCTAG < 41bp 0.504845670546519 0.72052330894225 NA NA prediction 0.431355276791462 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49935464 chr12:49935463 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26593 0 0 0 0 2 KCNH3 chr12:49935413 3'AG 49935413 Downstream 51bp 24202 chr12 49935463 49935463 1 + G A LUAD 49935464 + 49935444 49935484 41 ACCCATAAAGAATGAGAAAGGGGAGGTGGCTCTCTTCCTAG ACCCATAAAGAATGAGAAAAGGGAGGTGGCTCTCTTCCTAG < 41bp 0.504845670546519 0.72052330894225 NA NA prediction 0.431355276791462 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49935464 chr12:49935463 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26593 0 0 0 0 2 KCNH3 chr12:49935547 5'GT 49935547 Upstream 85bp 24203 chr12 7293961 7293961 1 + C T STAD 7293962 + 7293942 7293982 41 TGGCCTCATCCACCCACCCCGAAGGGAGCCTGCTCTCATGA TGGCCTCATCCACCCACCCTGAAGGGAGCCTGCTCTCATGA < 41bp 0.497629823101784 0.715677017751371 NA NA prediction 0.431354035502741 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7293962 chr12:7293961 stopgain 0.907 1 20 hm7G_associated_SNPs_26594 0 0 1 0 1 CLSTN3 chr12:7294000 5'GT 7294000 Upstream 40bp 24204 chr12 27465570 27465570 1 + G T UCEC 27465571 + 27465551 27465591 41 TACAGTTTTCAGGATAAGAGGAATCTTTATCTAATCATGGA TACAGTTTTCAGGATAAGATGAATCTTTATCTAATCATGGA < 41bp 0.389988857155998 0.715663907946233 NA NA prediction 0.431327815892466 Functional Gain - STK38L ENSG00000211455 CDS Human protein_coding chr12:27465571 chr12:27465570 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_26595 0 0 0 0 2 STK38L chr12:27465482 3'AG 27465482 Downstream 89bp 24205 chr12 27465570 27465570 1 + G T UCEC 27465571 + 27465551 27465591 41 TACAGTTTTCAGGATAAGAGGAATCTTTATCTAATCATGGA TACAGTTTTCAGGATAAGATGAATCTTTATCTAATCATGGA < 41bp 0.389988857155998 0.715663907946233 NA NA prediction 0.431327815892466 Functional Gain - STK38L ENSG00000211455 CDS Human protein_coding chr12:27465571 chr12:27465570 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_26595 0 0 0 0 2 STK38L chr12:27465605 5'GT 27465605 Upstream 36bp 24206 chr11 2943393 2943393 1 + G A rs141165353 2943394 + 2943374 2943414 41 TCGGAGGAGGTGCTGCTCCGGGCCAGCGTGCTGGTCTTCAT TCGGAGGAGGTGCTGCTCCAGGCCAGCGTGCTGGTCTTCAT < 41bp 0.527170056951575 0.742825481000527 NA NA prediction 0.431310848097904 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2943394 chr11:2943393 nonsynonymous SNV 0.287 1 20 hm7G_associated_SNPs_26598 0 0 1 0 2 SLC22A18 chr11:2943332 3'AG 2943332 Downstream 62bp 24207 chr11 2943393 2943393 1 + G A rs141165353 2943394 + 2943374 2943414 41 TCGGAGGAGGTGCTGCTCCGGGCCAGCGTGCTGGTCTTCAT TCGGAGGAGGTGCTGCTCCAGGCCAGCGTGCTGGTCTTCAT < 41bp 0.527170056951575 0.742825481000527 NA NA prediction 0.431310848097904 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2943394 chr11:2943393 nonsynonymous SNV 0.287 1 20 hm7G_associated_SNPs_26598 0 0 1 0 2 SLC22A18 chr11:2943433 5'GT 2943433 Upstream 41bp 24208 chr20 2688609 2688609 1 + G A SKCM 2688610 + 2688590 2688630 41 CAGGCCATCATCTATGAGGGGCAGGACAAGAACCCCGAAAT CAGGCCATCATCTATGAGGAGCAGGACAAGAACCCCGAAAT < 41bp 0.52713833519734 0.742791635775724 NA NA prediction 0.431306601156768 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2688610 chr20:2688609 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26599 0 0 0 0 2 EBF4 chr20:2688593 3'AG 2688593 Downstream 17bp 24209 chr20 2688609 2688609 1 + G A SKCM 2688610 + 2688590 2688630 41 CAGGCCATCATCTATGAGGGGCAGGACAAGAACCCCGAAAT CAGGCCATCATCTATGAGGAGCAGGACAAGAACCCCGAAAT < 41bp 0.52713833519734 0.742791635775724 NA NA prediction 0.431306601156768 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2688610 chr20:2688609 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26599 0 0 0 0 2 EBF4 chr20:2688666 5'GT 2688666 Upstream 58bp 24210 chr6 33403339 33403339 1 + C T STAD 33403340 + 33403320 33403360 41 TTGCCTGTCGGTCTGCGGCCGAAAGAGACAAATGGATTGAG TTGCCTGTCGGTCTGCGGCTGAAAGAGACAAATGGATTGAG < 41bp 0.501102323458711 0.716754668779141 NA NA prediction 0.43130469064086 Functional Gain - SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33403340 chr6:33403339 synonymous SNV . 0 20 hm7G_associated_SNPs_26600 0 0 1 0 2 SYNGAP1 chr6:33403292 3'AG 33403292 Downstream 48bp 24211 chr6 33403339 33403339 1 + C T STAD 33403340 + 33403320 33403360 41 TTGCCTGTCGGTCTGCGGCCGAAAGAGACAAATGGATTGAG TTGCCTGTCGGTCTGCGGCTGAAAGAGACAAATGGATTGAG < 41bp 0.501102323458711 0.716754668779141 NA NA prediction 0.43130469064086 Functional Gain - SYNGAP1 ENSG00000197283 CDS Human protein_coding chr6:33403340 chr6:33403339 synonymous SNV . 0 20 hm7G_associated_SNPs_26600 0 0 1 0 2 SYNGAP1 chr6:33403390 5'GT 33403390 Upstream 52bp 24212 chr12 50498451 50498451 1 + G T STAD 50498452 + 50498432 50498472 41 GGTATTTGAGGAAGACATTGGAGGCAAAAAGCTGACTGAGA GGTATTTGAGGAAGACATTTGAGGCAAAAAGCTGACTGAGA < 41bp 0.686865458268325 0.902515018692633 NA NA prediction 0.431299120848615 Functional Gain - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50498452 chr12:50498451 stopgain 0.991 1 20 hm7G_associated_SNPs_26602 0 0 0 0 2 GPD1 chr12:50498357 3'AG 50498357 Downstream 95bp 24213 chr12 50498451 50498451 1 + G T STAD 50498452 + 50498432 50498472 41 GGTATTTGAGGAAGACATTGGAGGCAAAAAGCTGACTGAGA GGTATTTGAGGAAGACATTTGAGGCAAAAAGCTGACTGAGA < 41bp 0.686865458268325 0.902515018692633 NA NA prediction 0.431299120848615 Functional Gain - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50498452 chr12:50498451 stopgain 0.991 1 20 hm7G_associated_SNPs_26602 0 0 0 0 2 GPD1 chr12:50498534 5'GT 50498534 Upstream 84bp 24214 chr19 49967512 49967512 1 + G A BLCA 49967513 + 49967493 49967533 41 TGGGGCAGGCGCTGGAGCTGGGCTATGGGTCAGTCTGCGTG TGGGGCAGGCGCTGGAGCTAGGCTATGGGTCAGTCTGCGTG < 41bp 0.488129085215987 0.71564640608683 NA NA prediction 0.43129281217366 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49967513 chr19:49967512 synonymous SNV . 0 20 hm7G_associated_SNPs_26604 0 0 1 0 1 ALDH16A1 chr19:49967520 5'GT 49967520 Upstream 9bp 24215 chr20 44663642 44663642 1 + G T LUAD 44663643 + 44663623 44663663 41 ACAGCACCGACACAGAGAAGGGAAAGGAGTATGATGGCAAG ACAGCACCGACACAGAGAATGGAAAGGAGTATGATGGCAAG < 41bp 0.691425207486342 0.90707059125966 NA NA prediction 0.431290767546634 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44663643 chr20:44663642 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_26605 0 0 0 2 2 SLC12A5 chr20:44663587 3'AG 44663587 Downstream 56bp 24216 chr20 44663642 44663642 1 + G T LUAD 44663643 + 44663623 44663663 41 ACAGCACCGACACAGAGAAGGGAAAGGAGTATGATGGCAAG ACAGCACCGACACAGAGAATGGAAAGGAGTATGATGGCAAG < 41bp 0.691425207486342 0.90707059125966 NA NA prediction 0.431290767546634 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44663643 chr20:44663642 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_26605 0 0 0 2 2 SLC12A5 chr20:44663681 5'GT 44663681 Upstream 40bp 24217 chrX 69670154 69670154 1 + C T OV 69670155 + 69670135 69670175 41 ATTGGGGACCGGCTGCTGGCGGTGAGACAGACTTCATGGGG ATTGGGGACCGGCTGCTGGTGGTGAGACAGACTTCATGGGG < 41bp 0.501617941591198 0.717261767445049 NA NA prediction 0.431287651707702 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69670155 chrX:69670154 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_26606 0 0 0 0 1 DLG3 chrX:69670155 5'GT 69670155 Upstream 2bp 24218 chr3 156177653 156177653 1 + G T UCEC 156177654 + 156177634 156177674 41 GAGCATCATCAAGAAGAAAGGCTGGAGGTATTGCATTCGCC GAGCATCATCAAGAAGAAATGCTGGAGGTATTGCATTCGCC < 41bp 0.402338495783676 0.715639615026367 NA NA prediction 0.431279230052734 Functional Gain - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156177654 chr3:156177653 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26609 0 0 0 0 2 KCNAB1 chr3:156177616 3'AG 156177616 Downstream 38bp 24219 chr3 156177653 156177653 1 + G T UCEC 156177654 + 156177634 156177674 41 GAGCATCATCAAGAAGAAAGGCTGGAGGTATTGCATTCGCC GAGCATCATCAAGAAGAAATGCTGGAGGTATTGCATTCGCC < 41bp 0.402338495783676 0.715639615026367 NA NA prediction 0.431279230052734 Functional Gain - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156177654 chr3:156177653 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26609 0 0 0 0 2 KCNAB1 chr3:156177660 5'GT 156177660 Upstream 8bp 24220 chr17 6927467 6927467 1 + G T UCEC 6927468 + 6927448 6927488 41 GACGTGCTCTCTCTGCCCGGGGGTCCCGAAGCGAGAGGCTT GACGTGCTCTCTCTGCCCGTGGGTCCCGAAGCGAGAGGCTT < 41bp 0.696904134801667 0.912543024379188 NA NA prediction 0.431277779155042 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927468 chr17:6927467 nonsynonymous SNV 0.677 0 20 hm7G_associated_SNPs_26610 0 0 0 0 1 BCL6B chr17:6927402 3'AG 6927402 Downstream 66bp 24221 chrX 53221950 53221950 1 + G A CESC 53221951 + 53221931 53221971 41 AGGGAGGGAAGACTCCAGGGGCCGGCCCCCAGGAGCTGAGG AGGGAGGGAAGACTCCAGGAGCCGGCCCCCAGGAGCTGAGG < 41bp 0.505420552145701 0.721055640329356 NA NA prediction 0.431270176367309 Functional Gain - KDM5C ENSG00000126012 CDS Human protein_coding chrX:53221951 chrX:53221950 synonymous SNV . 0 20 hm7G_associated_SNPs_26611 0 0 0 0 1 KDM5C chrX:53222019 5'GT 53222019 Upstream 70bp 24222 chr2 29240751 29240751 1 + G T LUSC 29240752 + 29240732 29240772 41 AGCATCATCCTGAGGAAGTGGGCCAGCCGGGCCTCCCTGCC AGCATCATCCTGAGGAAGTTGGCCAGCCGGGCCTCCCTGCC < 41bp 0.357662585987869 0.715634812085492 NA NA prediction 0.431269624170984 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29240752 chr2:29240751 nonsynonymous SNV 0.306 1 20 hm7G_associated_SNPs_26612 0 0 0 0 2 TOGARAM2 chr2:29240658 3'AG 29240658 Downstream 94bp 24223 chr2 29240751 29240751 1 + G T LUSC 29240752 + 29240732 29240772 41 AGCATCATCCTGAGGAAGTGGGCCAGCCGGGCCTCCCTGCC AGCATCATCCTGAGGAAGTTGGCCAGCCGGGCCTCCCTGCC < 41bp 0.357662585987869 0.715634812085492 NA NA prediction 0.431269624170984 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29240752 chr2:29240751 nonsynonymous SNV 0.306 1 20 hm7G_associated_SNPs_26612 0 0 0 0 2 TOGARAM2 chr2:29240822 5'GT 29240822 Upstream 72bp 24224 chr1 158325164 158325164 1 + G T UCEC 158325165 + 158325145 158325185 41 CTTAAATATGGCATATCAAGGGTCAGATTTCCTGAGTTTCC CTTAAATATGGCATATCAATGGTCAGATTTCCTGAGTTTCC < 41bp 0.412593463308985 0.715628235077095 NA NA prediction 0.43125647015419 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325165 chr1:158325164 nonsynonymous SNV 0.396 3 20 hm7G_associated_SNPs_26614 0 0 0 0 1 CD1E chr1:158325090 3'AG 158325090 Downstream 75bp 24225 chr9 34971375 34971375 1 + G T GBM 34971376 + 34971356 34971396 41 GTGTCTGCTTTCAAGGATGGGCTGCGGGACAGGCCTTCCAT GTGTCTGCTTTCAAGGATGTGCTGCGGGACAGGCCTTCCAT < 41bp 0.68987605147378 0.905484925457517 NA NA prediction 0.431217747967475 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34971376 chr9:34971375 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26617 0 0 0 0 1 PHF24 chr9:34971292 3'AG 34971292 Downstream 84bp 24226 chr14 24568405 24568405 1 + G T LUSC 24568406 + 24568386 24568426 41 GCCCTACGCATCGCCTCTCGGCTGGCCCGGGATGAGGGCTG GCCCTACGCATCGCCTCTCTGCTGGCCCGGGATGAGGGCTG < 41bp 0.691307684765181 0.906915445288602 NA NA prediction 0.431215521046842 Functional Gain - PCK2 ENSG00000100889 CDS Human protein_coding chr14:24568406 chr14:24568405 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_26618 0 0 1 0 1 PCK2 chr14:24568445 5'GT 24568445 Upstream 41bp 24227 chr17 7948293 7948293 1 + G A rs146184262 7948294 + 7948274 7948314 41 GGCCTCAGTGTTGGGTCCTGGGACCAGCTTGCAGGCTGAGC GGCCTCAGTGTTGGGTCCTAGGACCAGCTTGCAGGCTGAGC < 41bp 0.524283345236596 0.739889902469253 NA NA prediction 0.431213114465316 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7948294 chr17:7948293 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_26619 0 0 0 0 1 ALOX15B chr17:7948319 5'GT 7948319 Upstream 27bp 24228 chr5 159659203 159659203 1 + G A STAD 159659204 + 159659184 159659224 41 TTGGTCCCAGCACTACTCCGGGGGCCACACCATGACCAACA TTGGTCCCAGCACTACTCCAGGGGCCACACCATGACCAACA < 41bp 0.500839364289734 0.716442201568745 NA NA prediction 0.431205674558022 Functional Gain - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159659204 chr5:159659203 nonsynonymous SNV 0.225 1 20 hm7G_associated_SNPs_26620 0 0 0 0 2 FABP6 chr5:159659105 3'AG 159659105 Downstream 99bp 24229 chr5 159659203 159659203 1 + G A STAD 159659204 + 159659184 159659224 41 TTGGTCCCAGCACTACTCCGGGGGCCACACCATGACCAACA TTGGTCCCAGCACTACTCCAGGGGCCACACCATGACCAACA < 41bp 0.500839364289734 0.716442201568745 NA NA prediction 0.431205674558022 Functional Gain - FABP6 ENSG00000170231 CDS Human protein_coding chr5:159659204 chr5:159659203 nonsynonymous SNV 0.225 1 20 hm7G_associated_SNPs_26620 0 0 0 0 2 FABP6 chr5:159659280 5'GT 159659280 Upstream 78bp 24230 chr17 72786377 72786377 1 + C T rs117699067 72786378 + 72786358 72786398 41 CCTCCACAGCCTCAGACAGCGATGTTCTCATCCGGGACAAC CCTCCACAGCCTCAGACAGTGATGTTCTCATCCGGGACAAC < 41bp 0.496501661955408 0.715602594470089 NA NA prediction 0.431205188940178 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72786378 chr17:72786377 synonymous SNV . 0 20 hm7G_associated_SNPs_26621 0 0 1 0 2 TMEM104 chr17:72786339 3'AG 72786339 Downstream 39bp 24231 chr17 72786377 72786377 1 + C T rs117699067 72786378 + 72786358 72786398 41 CCTCCACAGCCTCAGACAGCGATGTTCTCATCCGGGACAAC CCTCCACAGCCTCAGACAGTGATGTTCTCATCCGGGACAAC < 41bp 0.496501661955408 0.715602594470089 NA NA prediction 0.431205188940178 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72786378 chr17:72786377 synonymous SNV . 0 20 hm7G_associated_SNPs_26621 0 0 1 0 2 TMEM104 chr17:72786435 5'GT 72786435 Upstream 59bp 24232 chr10 75556988 75556988 1 + G A CESC 75556989 + 75556969 75557009 41 CGTGGAGGCTATAATGGACGGGGATGGGGGTCCCCAGGACG CGTGGAGGCTATAATGGACAGGGATGGGGGTCCCCAGGACG < 41bp 0.495523992863948 0.715600508145931 NA NA prediction 0.431201016291863 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75556989 chr10:75556988 nonsynonymous SNV 0.964 3 20 hm7G_associated_SNPs_26622 0 0 1 0 1 ZSWIM8 chr10:75557029 5'GT 75557029 Upstream 42bp 24233 chr11 89421771 89421771 1 + G T STAD 89421772 + 89421752 89421792 41 GATAAGCAAATTGGGATCTGGAAATGATTTTGAGGTGTTCT GATAAGCAAATTGGGATCTTGAAATGATTTTGAGGTGTTCT < 41bp 0.64612869978491 0.861727243672267 NA NA prediction 0.431197087774714 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89421772 chr11:89421771 . . 0 20 hm7G_associated_SNPs_26623 0 0 0 0 2 FOLH1B chr11:89421752 3'AG 89421752 Downstream 20bp 24234 chr11 89421771 89421771 1 + G T STAD 89421772 + 89421752 89421792 41 GATAAGCAAATTGGGATCTGGAAATGATTTTGAGGTGTTCT GATAAGCAAATTGGGATCTTGAAATGATTTTGAGGTGTTCT < 41bp 0.64612869978491 0.861727243672267 NA NA prediction 0.431197087774714 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89421772 chr11:89421771 . . 0 20 hm7G_associated_SNPs_26623 0 0 0 0 2 FOLH1B chr11:89421842 5'GT 89421842 Upstream 72bp 24235 chr19 51647745 51647745 1 + G A SKCM 51647746 + 51647726 51647766 41 TGACCTGCTCTGTGCCCTGGGCCTGTGAGCAGGGGACGCCC TGACCTGCTCTGTGCCCTGAGCCTGTGAGCAGGGGACGCCC < 41bp 0.481292910618358 0.715597681896665 NA NA prediction 0.431195363793329 Functional Gain - SIGLEC7 ENSG00000168995 CDS Human protein_coding chr19:51647746 chr19:51647745 stopgain 0.966 0 20 hm7G_associated_SNPs_26624 0 0 0 0 1 SIGLEC7 chr19:51647663 3'AG 51647663 Downstream 83bp 24236 chr3 167512409 167512409 1 + G T HNSC 167512410 + 167512390 167512430 41 CCTTTATTTTCTTTTTAGGGGAATTTAGTGATGGCTCCAAT CCTTTATTTTCTTTTTAGGTGAATTTAGTGATGGCTCCAAT < 41bp 0.670877554714959 0.886474906964181 NA NA prediction 0.431194704498444 Functional Gain - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167512410 chr3:167512409 synonymous SNV . 0 20 hm7G_associated_SNPs_26625 0 0 0 0 1 SERPINI1 chr3:167512408 3'AG 167512408 Downstream 2bp 24237 chr22 31671244 31671244 1 + G A rs144719111 31671245 + 31671225 31671265 41 TTCCCACAGATTGTCCCCCGGCCTTCTTCCCGCTGGCCGCC TTCCCACAGATTGTCCCCCAGCCTTCTTCCCGCTGGCCGCC < 41bp 0.500362735138814 0.715954754582904 NA NA prediction 0.431184038888179 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31671245 chr22:31671244 synonymous SNV . 0 20 hm7G_associated_SNPs_26629 0 0 0 0 1 LIMK2 chr22:31671294 5'GT 31671294 Upstream 51bp 24238 chr14 62551064 62551064 1 + G T UCEC 62551065 + 62551045 62551085 41 ATCTGTGGAAATGATCAAAGGCAGCCATTTCCGAAACCTCG ATCTGTGGAAATGATCAAATGCAGCCATTTCCGAAACCTCG < 41bp 0.683086099847192 0.898672490912568 NA NA prediction 0.431172782130751 Functional Gain - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62551065 chr14:62551064 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26631 0 0 1 0 1 SYT16 chr14:62551103 5'GT 62551103 Upstream 40bp 24239 chr17 7291775 7291775 1 + G T UCEC 7291776 + 7291756 7291796 41 CCTCGGTCCTCGTCCCACAGGGGGTGGTTCAAGCCCCCCTG CCTCGGTCCTCGTCCCACATGGGGTGGTTCAAGCCCCCCTG < 41bp 0.36353347967181 0.715576544425384 NA NA prediction 0.431153088850768 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7291776 chr17:7291775 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_26633 0 0 0 0 1 TNK1 chr17:7291725 3'AG 7291725 Downstream 51bp 24240 chr9 140695341 140695341 1 + G T LIHC 140695342 + 140695322 140695362 41 TCCCTGGCAGGATGACGGAGGCTGGACACCCATGATCTGGG TCCCTGGCAGGATGACGGATGCTGGACACCCATGATCTGGG < 41bp 0.368238328739108 0.71557108346373 NA NA prediction 0.431142166927459 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140695342 chr9:140695341 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_26635 0 0 1 0 2 EHMT1 chr9:140695332 3'AG 140695332 Downstream 10bp 24241 chr9 140695341 140695341 1 + G T LIHC 140695342 + 140695322 140695362 41 TCCCTGGCAGGATGACGGAGGCTGGACACCCATGATCTGGG TCCCTGGCAGGATGACGGATGCTGGACACCCATGATCTGGG < 41bp 0.368238328739108 0.71557108346373 NA NA prediction 0.431142166927459 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140695342 chr9:140695341 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_26635 0 0 1 0 2 EHMT1 chr9:140695436 5'GT 140695436 Upstream 96bp 24242 chr4 2632760 2632760 1 + C T BRCA 2632761 + 2632741 2632781 41 CGCCTGCTCCGGCAGCTGTCGGCTGCGGCCAAGGTGAAGGC CGCCTGCTCCGGCAGCTGTTGGCTGCGGCCAAGGTGAAGGC < 41bp 0.50185394461133 0.717422630193822 NA NA prediction 0.431137371164985 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2632761 chr4:2632760 nonsynonymous SNV 0.461 4 20 hm7G_associated_SNPs_26637 0 0 1 0 1 FAM193A chr4:2632662 3'AG 2632662 Downstream 99bp 24243 chr20 31386314 31386314 1 + G A STAD 31386315 + 31386295 31386335 41 TGGTGGGCACAGGCACAGCGGCCGAGGCCAAGCTTCAGGAG TGGTGGGCACAGGCACAGCAGCCGAGGCCAAGCTTCAGGAG < 41bp 0.499393881945846 0.715567677868455 NA NA prediction 0.43113535573691 Functional Gain - DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31386315 chr20:31386314 synonymous SNV . 0 20 hm7G_associated_SNPs_26638 0 0 0 0 1 DNMT3B chr20:31386266 3'AG 31386266 Downstream 49bp 24244 chr1 34663513 34663513 1 + G A COAD 34663514 + 34663494 34663534 41 TGGAGAGGCACCACTTGATGGGTGAGTGGGGTTGGAACTGG TGGAGAGGCACCACTTGATAGGTGAGTGGGGTTGGAACTGG < 41bp 0.509869185115191 0.725425603908695 NA NA prediction 0.431112837587008 Functional Gain - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34663514 chr1:34663513 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_26640 0 0 0 0 1 C1orf94 chr1:34663514 5'GT 34663514 Upstream 2bp 24245 chr7 141443384 141443384 1 + G T LUAD 141443385 + 141443365 141443405 41 GAATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGACCCTG GAATCGTGTGCACTTACTTTGGCGAGTGGGTCAGGACCCTG < 41bp 0.690962965936856 0.906514565411026 NA NA prediction 0.43110319894834 Functional Gain - SSBP1 ENSG00000106028 CDS Human protein_coding chr7:141443385 chr7:141443384 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26642 0 0 1 0 1 SSBP1 chr7:141443361 3'AG 141443361 Downstream 24bp 24246 chr15 73995330 73995330 1 + G A LUAD 73995331 + 73995311 73995351 41 GCATCCTGCGGGTGGTGCTGGGTGCAAATGGCACCTACAGC GCATCCTGCGGGTGGTGCTAGGTGCAAATGGCACCTACAGC < 41bp 0.499047592877782 0.71554496457092 NA NA prediction 0.43108992914184 Functional Gain - CD276 ENSG00000103855 CDS Human protein_coding chr15:73995331 chr15:73995330 synonymous SNV . 0 20 hm7G_associated_SNPs_26643 0 0 0 0 1 CD276 chr15:73995427 5'GT 73995427 Upstream 98bp 24247 chr11 47008816 47008816 1 + G T UCEC 47008817 + 47008797 47008837 41 TGCCAGCTGCTAGAAAACAGGGAAGATATTAGCCAATATGG TGCCAGCTGCTAGAAAACATGGAAGATATTAGCCAATATGG < 41bp 0.378324149435154 0.715542324521008 NA NA prediction 0.431084649042017 Functional Gain - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47008817 chr11:47008816 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_26647 0 0 1 0 2 C11orf49 chr11:47008759 3'AG 47008759 Downstream 58bp 24248 chr11 47008816 47008816 1 + G T UCEC 47008817 + 47008797 47008837 41 TGCCAGCTGCTAGAAAACAGGGAAGATATTAGCCAATATGG TGCCAGCTGCTAGAAAACATGGAAGATATTAGCCAATATGG < 41bp 0.378324149435154 0.715542324521008 NA NA prediction 0.431084649042017 Functional Gain - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47008817 chr11:47008816 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_26647 0 0 1 0 2 C11orf49 chr11:47008861 5'GT 47008861 Upstream 46bp 24249 chr11 65715531 65715531 1 + G T UCEC 65715532 + 65715512 65715552 41 CCAGGCCTCCAAGCGGAATGGAAAGGCCTATGCCTCGGGAT CCAGGCCTCCAAGCGGAATTGAAAGGCCTATGCCTCGGGAT < 41bp 0.377963327409534 0.715541769814576 NA NA prediction 0.431083539629152 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65715532 chr11:65715531 unknown 0.000 0 20 hm7G_associated_SNPs_26648 0 0 0 0 2 TSGA10IP chr11:65715472 3'AG 65715472 Downstream 60bp 24250 chr11 65715531 65715531 1 + G T UCEC 65715532 + 65715512 65715552 41 CCAGGCCTCCAAGCGGAATGGAAAGGCCTATGCCTCGGGAT CCAGGCCTCCAAGCGGAATTGAAAGGCCTATGCCTCGGGAT < 41bp 0.377963327409534 0.715541769814576 NA NA prediction 0.431083539629152 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65715532 chr11:65715531 unknown 0.000 0 20 hm7G_associated_SNPs_26648 0 0 0 0 2 TSGA10IP chr11:65715619 5'GT 65715619 Upstream 89bp 24251 chr16 2578082 2578082 1 + G A HNSC 2578083 + 2578063 2578103 41 CACTCAGTGGCTGACCTGCGGGCGGCAGAGGATGCTGTGTG CACTCAGTGGCTGACCTGCAGGCGGCAGAGGATGCTGTGTG < 41bp 0.489867379560897 0.715540355482125 NA NA prediction 0.431080710964251 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578083 chr16:2578082 nonsynonymous SNV 0.833 0 20 hm7G_associated_SNPs_26650 0 0 1 0 2 AMDHD2 chr16:2578061 3'AG 2578061 Downstream 22bp 24252 chr16 2578082 2578082 1 + G A HNSC 2578083 + 2578063 2578103 41 CACTCAGTGGCTGACCTGCGGGCGGCAGAGGATGCTGTGTG CACTCAGTGGCTGACCTGCAGGCGGCAGAGGATGCTGTGTG < 41bp 0.489867379560897 0.715540355482125 NA NA prediction 0.431080710964251 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2578083 chr16:2578082 nonsynonymous SNV 0.833 0 20 hm7G_associated_SNPs_26650 0 0 1 0 2 AMDHD2 chr16:2578149 5'GT 2578149 Upstream 68bp 24253 chr11 112104184 112104184 1 + G T LIHC 112104185 + 112104165 112104205 41 AATGTAGCTGTTTATATCTGGGACAACCTCCAGAAAGTTCT AATGTAGCTGTTTATATCTTGGACAACCTCCAGAAAGTTCT < 41bp 0.400657371348513 0.71552823839349 NA NA prediction 0.43105647678698 Functional Gain - PTS ENSG00000150787 CDS Human protein_coding chr11:112104185 chr11:112104184 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_26652 0 0 1 0 1 PTS chr11:112104155 3'AG 112104155 Downstream 30bp 24254 chr17 7910749 7910749 1 + G A KIRP 7910750 + 7910730 7910770 41 TCTTTCTCCACCAGGCACCGGCTACTTCACATGCAAATGGT TCTTTCTCCACCAGGCACCAGCTACTTCACATGCAAATGGT < 41bp 0.515520651521906 0.731044906072388 NA NA prediction 0.431048509100963 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7910750 chr17:7910749 nonsynonymous SNV 0.936 1 20 hm7G_associated_SNPs_26654 0 0 0 0 2 GUCY2D chr17:7910744 3'AG 7910744 Downstream 6bp 24255 chr17 7910749 7910749 1 + G A KIRP 7910750 + 7910730 7910770 41 TCTTTCTCCACCAGGCACCGGCTACTTCACATGCAAATGGT TCTTTCTCCACCAGGCACCAGCTACTTCACATGCAAATGGT < 41bp 0.515520651521906 0.731044906072388 NA NA prediction 0.431048509100963 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7910750 chr17:7910749 nonsynonymous SNV 0.936 1 20 hm7G_associated_SNPs_26654 0 0 0 0 2 GUCY2D chr17:7910846 5'GT 7910846 Upstream 98bp 24256 chr5 140167418 140167418 1 + G A DLBC 140167419 + 140167399 140167439 41 GTCAGTGCACGCGGAGAGCGGCAAGGTGTACGCACTGCAGC GTCAGTGCACGCGGAGAGCAGCAAGGTGTACGCACTGCAGC < 41bp 0.509789064404088 0.725307103588488 NA NA prediction 0.431036078368799 Functional Gain - PCDHA1 ENSG00000204970 CDS Human protein_coding chr5:140167419 chr5:140167418 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26655 0 0 0 0 1 PCDHA1 chr5:140167477 5'GT 140167477 Upstream 60bp 24257 chr13 33250043 33250043 1 + G T UCEC 33250044 + 33250024 33250064 41 CAAAAATGTTTGGGGCAAAGGATTCAGAATTGGCTTCTCAA CAAAAATGTTTGGGGCAAATGATTCAGAATTGGCTTCTCAA < 41bp 0.388067683781603 0.715500187314581 NA NA prediction 0.431000374629162 Functional Gain - PDS5B ENSG00000083642 CDS Human protein_coding chr13:33250044 chr13:33250043 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26657 0 0 1 0 2 PDS5B chr13:33249981 3'AG 33249981 Downstream 63bp 24258 chr13 33250043 33250043 1 + G T UCEC 33250044 + 33250024 33250064 41 CAAAAATGTTTGGGGCAAAGGATTCAGAATTGGCTTCTCAA CAAAAATGTTTGGGGCAAATGATTCAGAATTGGCTTCTCAA < 41bp 0.388067683781603 0.715500187314581 NA NA prediction 0.431000374629162 Functional Gain - PDS5B ENSG00000083642 CDS Human protein_coding chr13:33250044 chr13:33250043 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26657 0 0 1 0 2 PDS5B chr13:33250096 5'GT 33250096 Upstream 54bp 24259 chr7 143018932 143018932 1 + G A SKCM 143018933 + 143018913 143018953 41 TGGGCAGTGGCATCCCCGTGGGGAAAGAGGTAGGCCTGGCA TGGGCAGTGGCATCCCCGTAGGGAAAGAGGTAGGCCTGGCA < 41bp 0.525520356041061 0.741020113317432 NA NA prediction 0.430999514552742 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018933 chr7:143018932 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26658 0 0 0 0 1 CLCN1 chr7:143018941 5'GT 143018941 Upstream 10bp 24260 chr9 131847515 131847515 1 + G A STAD 131847516 + 131847496 131847536 41 AGCAGTGGGCACCAAGTACGGGATGCCCTCCAGCCATTCCC AGCAGTGGGCACCAAGTACAGGATGCCCTCCAGCCATTCCC < 41bp 0.537399879830315 0.752899485052005 NA NA prediction 0.430999210443379 Functional Gain - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847516 chr9:131847515 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26659 0 0 0 1 2 DOLPP1 chr9:131847486 3'AG 131847486 Downstream 30bp 24261 chr9 131847515 131847515 1 + G A STAD 131847516 + 131847496 131847536 41 AGCAGTGGGCACCAAGTACGGGATGCCCTCCAGCCATTCCC AGCAGTGGGCACCAAGTACAGGATGCCCTCCAGCCATTCCC < 41bp 0.537399879830315 0.752899485052005 NA NA prediction 0.430999210443379 Functional Gain - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847516 chr9:131847515 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26659 0 0 0 1 2 DOLPP1 chr9:131847585 5'GT 131847585 Upstream 71bp 24262 chr6 167708122 167708122 1 + G T HNSC 167708123 + 167708103 167708143 41 CGAGAGGCTGGGCTGCAAGGGGACCATCATCCTCTCCATGT CGAGAGGCTGGGCTGCAAGTGGACCATCATCCTCTCCATGT < 41bp 0.368617052965329 0.715496955443622 NA NA prediction 0.430993910887244 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708123 chr6:167708122 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_26661 0 0 0 0 1 UNC93A chr6:167708186 5'GT 167708186 Upstream 65bp 24263 chr16 83994295 83994295 1 + G A KIRP 83994296 + 83994276 83994316 41 ATGAAGTCGGTCCTCACCTGGAAGCACCGGAAGGAGCACGC ATGAAGTCGGTCCTCACCTAGAAGCACCGGAAGGAGCACGC < 41bp 0.504273754453926 0.71976129604196 NA NA prediction 0.430975083176068 Functional Gain - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83994296 chr16:83994295 stopgain 0.832 1 20 hm7G_associated_SNPs_26662 0 0 0 0 1 OSGIN1 chr16:83994365 5'GT 83994365 Upstream 71bp 24264 chr1 153750725 153750725 1 + G A SKCM 153750726 + 153750706 153750746 41 CGTTTTGTGCGGCGCTTCGGGCCCCTGCAGGTGCTGGAGAC CGTTTTGTGCGGCGCTTCGAGCCCCTGCAGGTGCTGGAGAC < 41bp 0.532624059454747 0.748107802524191 NA NA prediction 0.430967486138888 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750726 chr1:153750725 nonsynonymous SNV 0.966 4 20 hm7G_associated_SNPs_26663 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 89bp 24265 chr21 47409043 47409043 1 + G A COAD 47409044 + 47409024 47409064 41 AGGAGAGAAGGGAGAAGCCGGAGATCCTGTGAGTGCCTGAC AGGAGAGAAGGGAGAAGCCAGAGATCCTGTGAGTGCCTGAC < 41bp 0.503661713852354 0.719144130579545 NA NA prediction 0.430964833454383 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409044 chr21:47409043 nonsynonymous SNV 0.794 4 20 hm7G_associated_SNPs_26664 4 0 0 0 2 COL6A1 chr21:47408998 3'AG 47408998 Downstream 46bp 24266 chr21 47409043 47409043 1 + G A COAD 47409044 + 47409024 47409064 41 AGGAGAGAAGGGAGAAGCCGGAGATCCTGTGAGTGCCTGAC AGGAGAGAAGGGAGAAGCCAGAGATCCTGTGAGTGCCTGAC < 41bp 0.503661713852354 0.719144130579545 NA NA prediction 0.430964833454383 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47409044 chr21:47409043 nonsynonymous SNV 0.794 4 20 hm7G_associated_SNPs_26664 4 0 0 0 2 COL6A1 chr21:47409051 5'GT 47409051 Upstream 9bp 24267 chr10 105187117 105187117 1 + C T UCEC 105187118 + 105187098 105187138 41 AAGTCACCCCAGATTCGTTCGAACCATCCCGGAGCTGAGTG AAGTCACCCCAGATTCGTTTGAACCATCCCGGAGCTGAGTG < 41bp 0.522440292514701 0.737920328640389 NA NA prediction 0.430960072251376 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105187118 chr10:105187117 stopgain 0.841 0 20 hm7G_associated_SNPs_26665 0 0 1 0 2 PDCD11 chr10:105187086 3'AG 105187086 Downstream 32bp 24268 chr10 105187117 105187117 1 + C T UCEC 105187118 + 105187098 105187138 41 AAGTCACCCCAGATTCGTTCGAACCATCCCGGAGCTGAGTG AAGTCACCCCAGATTCGTTTGAACCATCCCGGAGCTGAGTG < 41bp 0.522440292514701 0.737920328640389 NA NA prediction 0.430960072251376 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105187118 chr10:105187117 stopgain 0.841 0 20 hm7G_associated_SNPs_26665 0 0 1 0 2 PDCD11 chr10:105187148 5'GT 105187148 Upstream 32bp 24269 chr4 56768642 56768642 1 + G T COAD 56768643 + 56768623 56768663 41 TGGAAAGGAAGTAAAAAAAGGTCTAGATAACCTCTACAAGA TGGAAAGGAAGTAAAAAAATGTCTAGATAACCTCTACAAGA < 41bp 0.411302195342757 0.715477176302845 NA NA prediction 0.43095435260569 Functional Gain - EXOC1 ENSG00000090989 CDS Human protein_coding chr4:56768643 chr4:56768642 nonsynonymous SNV 0.192 4 20 hm7G_associated_SNPs_26666 0 0 0 0 1 EXOC1 chr4:56768704 5'GT 56768704 Upstream 63bp 24270 chr11 66366715 66366715 1 + G A rs140920411 66366716 + 66366696 66366736 41 ACTCAAGGGCATGGGCAGCGGCCAGTTGCGTGAGTGACCAC ACTCAAGGGCATGGGCAGCAGCCAGTTGCGTGAGTGACCAC < 41bp 0.533005709958004 0.748480141957454 NA NA prediction 0.430948863998901 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66366716 chr11:66366715 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_26667 0 0 1 0 1 CCS chr11:66366724 5'GT 66366724 Upstream 10bp 24271 chr17 79426564 79426564 1 + G A BLCA 79426565 + 79426545 79426585 41 CAGCCGGTACCTCCCGCCCGGCACGCGGGTCTGCGCCTACT CAGCCGGTACCTCCCGCCCAGCACGCGGGTCTGCGCCTACT < 41bp 0.485429950409609 0.715463125542846 NA NA prediction 0.430926251085692 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79426565 chr17:79426564 nonsynonymous SNV 0.034 4 20 hm7G_associated_SNPs_26669 0 0 0 0 2 BAHCC1 chr17:79426522 3'AG 79426522 Downstream 43bp 24272 chr17 79426564 79426564 1 + G A BLCA 79426565 + 79426545 79426585 41 CAGCCGGTACCTCCCGCCCGGCACGCGGGTCTGCGCCTACT CAGCCGGTACCTCCCGCCCAGCACGCGGGTCTGCGCCTACT < 41bp 0.485429950409609 0.715463125542846 NA NA prediction 0.430926251085692 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79426565 chr17:79426564 nonsynonymous SNV 0.034 4 20 hm7G_associated_SNPs_26669 0 0 0 0 2 BAHCC1 chr17:79426630 5'GT 79426630 Upstream 67bp 24273 chr19 4306218 4306218 1 + G T UCEC 4306219 + 4306199 4306239 41 ACTCGGCGAAGGTGCAGGAGGACCTCGAAGCAGAGTTCCAG ACTCGGCGAAGGTGCAGGATGACCTCGAAGCAGAGTTCCAG < 41bp 0.695602074512496 0.911058294606051 NA NA prediction 0.430912440187111 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4306219 chr19:4306218 nonsynonymous SNV 0.844 2 20 hm7G_associated_SNPs_26670 0 0 0 0 1 FSD1 chr19:4306195 3'AG 4306195 Downstream 24bp 24274 chr18 77728135 77728135 1 + G T rs2298645 77728136 + 77728116 77728156 41 ACTTACAGAAGAATGTCAAGGACTTAATGGTGCAAGCTGGC ACTTACAGAAGAATGTCAATGACTTAATGGTGCAAGCTGGC < 41bp 0.679485080368467 0.894939000063096 NA NA prediction 0.430907839389258 Functional Gain - HSBP1L1 ENSG00000226742 CDS Human protein_coding chr18:77728136 chr18:77728135 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_26671 0 0 1 0 1 HSBP1L1 chr18:77728183 5'GT 77728183 Upstream 49bp 24275 chr17 40630571 40630571 1 + G T BLCA 40630572 + 40630552 40630592 41 GAAATGTGTTCCTGCGACAGGCTGAAATCGAGAACCCCCTG GAAATGTGTTCCTGCGACATGCTGAAATCGAGAACCCCCTG < 41bp 0.68709628889981 0.902544667644897 NA NA prediction 0.430896757490173 Functional Gain - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40630572 chr17:40630571 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26673 0 0 1 0 2 ATP6V0A1 chr17:40630481 3'AG 40630481 Downstream 91bp 24276 chr17 40630571 40630571 1 + G T BLCA 40630572 + 40630552 40630592 41 GAAATGTGTTCCTGCGACAGGCTGAAATCGAGAACCCCCTG GAAATGTGTTCCTGCGACATGCTGAAATCGAGAACCCCCTG < 41bp 0.68709628889981 0.902544667644897 NA NA prediction 0.430896757490173 Functional Gain - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40630572 chr17:40630571 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26673 0 0 1 0 2 ATP6V0A1 chr17:40630607 5'GT 40630607 Upstream 37bp 24277 chr7 142566759 142566759 1 + G A CESC 142566760 + 142566740 142566780 41 AGTTCAGCAGCCTGCAGCTGGTGGCCATGCAGCGGGGAGTG AGTTCAGCAGCCTGCAGCTAGTGGCCATGCAGCGGGGAGTG < 41bp 0.497083753461983 0.715444817936353 NA NA prediction 0.430889635872707 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566760 chr7:142566759 synonymous SNV . 0 20 hm7G_associated_SNPs_26676 0 0 0 0 1 EPHB6 chr7:142566727 3'AG 142566727 Downstream 33bp 24278 chr17 27014396 27014396 1 + C T rs28753762 27014397 + 27014377 27014417 41 GAGTCAATGAGGTCGGGGTCGATGTCAACCGTGCCATTGCC GAGTCAATGAGGTCGGGGTTGATGTCAACCGTGCCATTGCC < 41bp 0.497918609342705 0.715441753513348 NA NA prediction 0.430883507026697 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014397 chr17:27014396 synonymous SNV . 0 20 hm7G_associated_SNPs_26677 0 0 1 0 2 SUPT6H chr17:27014322 3'AG 27014322 Downstream 75bp 24279 chr17 27014396 27014396 1 + C T rs28753762 27014397 + 27014377 27014417 41 GAGTCAATGAGGTCGGGGTCGATGTCAACCGTGCCATTGCC GAGTCAATGAGGTCGGGGTTGATGTCAACCGTGCCATTGCC < 41bp 0.497918609342705 0.715441753513348 NA NA prediction 0.430883507026697 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014397 chr17:27014396 synonymous SNV . 0 20 hm7G_associated_SNPs_26677 0 0 1 0 2 SUPT6H chr17:27014489 5'GT 27014489 Upstream 94bp 24280 chr9 126128212 126128212 1 + G A UCEC 126128213 + 126128193 126128233 41 CAGGCGTGACCTGCGAGATGGAGGTGGACGAGTGCGCCTCA CAGGCGTGACCTGCGAGATAGAGGTGGACGAGTGCGCCTCA < 41bp 0.500298366836229 0.715736739278272 NA NA prediction 0.430876744884086 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126128213 chr9:126128212 nonsynonymous SNV 0.685 1 20 hm7G_associated_SNPs_26679 0 0 0 0 1 CRB2 chr9:126128196 3'AG 126128196 Downstream 17bp 24281 chr5 1214088 1214088 1 + G A HNSC 1214089 + 1214069 1214109 41 TCACGGAGCTGGCCCAGCCGGACACCTGGCTGGACGCGGGC TCACGGAGCTGGCCCAGCCAGACACCTGGCTGGACGCGGGC < 41bp 0.539975819526208 0.755408231715472 NA NA prediction 0.430864824378528 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214089 chr5:1214088 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26681 0 0 0 0 2 SLC6A19 chr5:1214068 3'AG 1214068 Downstream 21bp 24282 chr5 1214088 1214088 1 + G A HNSC 1214089 + 1214069 1214109 41 TCACGGAGCTGGCCCAGCCGGACACCTGGCTGGACGCGGGC TCACGGAGCTGGCCCAGCCAGACACCTGGCTGGACGCGGGC < 41bp 0.539975819526208 0.755408231715472 NA NA prediction 0.430864824378528 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214089 chr5:1214088 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26681 0 0 0 0 2 SLC6A19 chr5:1214180 5'GT 1214180 Upstream 93bp 24283 chr14 69727121 69727121 1 + G A rs150774678 69727122 + 69727102 69727142 41 CAGCATCCTCCGGCGGCCGGGGCGCGCAGAGGGCAGGCAGG CAGCATCCTCCGGCGGCCGAGGCGCGCAGAGGGCAGGCAGG < 41bp 0.522049498129306 0.737478648457074 NA NA prediction 0.430858300655536 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69727122 chr14:69727121 synonymous SNV . 0 20 hm7G_associated_SNPs_26682 0 0 0 0 1 GALNT16 chr14:69727184 5'GT 69727184 Upstream 64bp 24284 chr1 28598229 28598229 1 + G A rs151208219 28598230 + 28598210 28598250 41 TCGAGCAGCACCTGGGGCTGGAGGCACTGATGTCCTCTGGG TCGAGCAGCACCTGGGGCTAGAGGCACTGATGTCCTCTGGG < 41bp 0.500386726366632 0.715804465048039 NA NA prediction 0.430835477362815 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28598230 chr1:28598229 synonymous SNV . 0 20 hm7G_associated_SNPs_26685 0 0 1 0 1 SESN2 chr1:28598185 3'AG 28598185 Downstream 45bp 24285 chr9 139564706 139564706 1 + G A rs146409818 139564707 + 139564687 139564727 41 ACTGGTGCCAGTGTTGGGAGGGGCACAGCCTGTCTGCAGAC ACTGGTGCCAGTGTTGGGAAGGGCACAGCCTGTCTGCAGAC < 41bp 0.541372111043994 0.75678274105543 NA NA prediction 0.430821260022871 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139564707 chr9:139564706 synonymous SNV . 0 20 hm7G_associated_SNPs_26686 0 0 1 0 2 EGFL7 chr9:139564621 3'AG 139564621 Downstream 86bp 24286 chr9 139564706 139564706 1 + G A rs146409818 139564707 + 139564687 139564727 41 ACTGGTGCCAGTGTTGGGAGGGGCACAGCCTGTCTGCAGAC ACTGGTGCCAGTGTTGGGAAGGGCACAGCCTGTCTGCAGAC < 41bp 0.541372111043994 0.75678274105543 NA NA prediction 0.430821260022871 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139564707 chr9:139564706 synonymous SNV . 0 20 hm7G_associated_SNPs_26686 0 0 1 0 2 EGFL7 chr9:139564782 5'GT 139564782 Upstream 77bp 24287 chr16 24909415 24909415 1 + C T UCEC 24909416 + 24909396 24909436 41 GTTCCCTGGGATGGTCAGCCGCATCCTCTTCCCAGGTGAGA GTTCCCTGGGATGGTCAGCTGCATCCTCTTCCCAGGTGAGA < 41bp 0.501828715555387 0.717237451026923 NA NA prediction 0.430817470943071 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24909416 chr16:24909415 nonsynonymous SNV 0.646 5 20 hm7G_associated_SNPs_26687 0 0 0 0 1 SLC5A11 chr16:24909430 5'GT 24909430 Upstream 16bp 24288 chr13 113803259 113803259 1 + G A LUSC 113803260 + 113803240 113803280 41 CACGGAGCAGGAGGAGGGCGGTGAGGCGGTGCACGAGGTGG CACGGAGCAGGAGGAGGGCAGTGAGGCGGTGCACGAGGTGG < 41bp 0.52400594624183 0.739412662891349 NA NA prediction 0.430813433299037 Functional Gain - F10 ENSG00000126218 CDS Human protein_coding chr13:113803260 chr13:113803259 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_26689 0 0 1 0 1 F10 chr13:113803230 3'AG 113803230 Downstream 30bp 24289 chr15 75093411 75093411 1 + G A STAD 75093412 + 75093392 75093432 41 GATCGTGGAGGAGAAGGGCGGGCTCTACATCGTCACTGAGT GATCGTGGAGGAGAAGGGCAGGCTCTACATCGTCACTGAGT < 41bp 0.53195627171821 0.747361254316818 NA NA prediction 0.430809965197218 Functional Gain - CSK ENSG00000103653 CDS Human protein_coding chr15:75093412 chr15:75093411 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_26690 0 0 1 0 2 CSK chr15:75093353 3'AG 75093353 Downstream 59bp 24290 chr15 75093411 75093411 1 + G A STAD 75093412 + 75093392 75093432 41 GATCGTGGAGGAGAAGGGCGGGCTCTACATCGTCACTGAGT GATCGTGGAGGAGAAGGGCAGGCTCTACATCGTCACTGAGT < 41bp 0.53195627171821 0.747361254316818 NA NA prediction 0.430809965197218 Functional Gain - CSK ENSG00000103653 CDS Human protein_coding chr15:75093412 chr15:75093411 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_26690 0 0 1 0 2 CSK chr15:75093443 5'GT 75093443 Upstream 33bp 24291 chr15 67457307 67457307 1 + G A CESC 67457308 + 67457288 67457328 41 TACTGCCGCCTGTGGCGATGGCCAGACCTGCACAGCCACCA TACTGCCGCCTGTGGCGATAGCCAGACCTGCACAGCCACCA < 41bp 0.494763563921292 0.715390105678414 NA NA prediction 0.430780211356827 Functional Gain - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67457308 chr15:67457307 stopgain 0.999 1 20 hm7G_associated_SNPs_26692 0 0 1 0 1 SMAD3 chr15:67457233 3'AG 67457233 Downstream 75bp 24292 chr12 6424253 6424253 1 + G A COAD 6424254 + 6424234 6424274 41 CGGCTGCCCCCTGAGGACCGGCGGCACTGGGAGATAGGAGA CGGCTGCCCCCTGAGGACCAGCGGCACTGGGAGATAGGAGA < 41bp 0.530079231301582 0.74546844298817 NA NA prediction 0.430778423373177 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6424254 chr12:6424253 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_26693 0 0 1 0 2 PLEKHG6 chr12:6424171 3'AG 6424171 Downstream 83bp 24293 chr12 6424253 6424253 1 + G A COAD 6424254 + 6424234 6424274 41 CGGCTGCCCCCTGAGGACCGGCGGCACTGGGAGATAGGAGA CGGCTGCCCCCTGAGGACCAGCGGCACTGGGAGATAGGAGA < 41bp 0.530079231301582 0.74546844298817 NA NA prediction 0.430778423373177 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6424254 chr12:6424253 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_26693 0 0 1 0 2 PLEKHG6 chr12:6424335 5'GT 6424335 Upstream 83bp 24294 chr9 34659801 34659801 1 + G A BLCA 34659802 + 34659782 34659822 41 GATCACAGATGCTGTGGCTGGGCTGCCCCATGCTGTACGAG GATCACAGATGCTGTGGCTAGGCTGCCCCATGCTGTACGAG < 41bp 0.523002119723084 0.738389588440623 NA NA prediction 0.430774937435078 Functional Gain - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34659802 chr9:34659801 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26694 0 0 0 1 2 IL11RA chr9:34659756 3'AG 34659756 Downstream 46bp 24295 chr9 34659801 34659801 1 + G A BLCA 34659802 + 34659782 34659822 41 GATCACAGATGCTGTGGCTGGGCTGCCCCATGCTGTACGAG GATCACAGATGCTGTGGCTAGGCTGCCCCATGCTGTACGAG < 41bp 0.523002119723084 0.738389588440623 NA NA prediction 0.430774937435078 Functional Gain - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34659802 chr9:34659801 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26694 0 0 0 1 2 IL11RA chr9:34659897 5'GT 34659897 Upstream 97bp 24296 chrX 2777918 2777918 1 + G A COAD 2777919 + 2777899 2777939 41 AAAGGTCGTCCACTTTTTGGGGTCCATGAAACCTTGGAACT AAAGGTCGTCCACTTTTTGAGGTCCATGAAACCTTGGAACT < 41bp 0.50092806719312 0.716312651874299 NA NA prediction 0.430769169362356 Functional Gain - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2777919 chrX:2777918 nonsynonymous SNV 0.166 4 20 hm7G_associated_SNPs_26695 0 0 0 0 1 GYG2 chrX:2777884 3'AG 2777884 Downstream 35bp 24297 chr19 5914490 5914490 1 + G A BLCA 5914491 + 5914471 5914511 41 CGGGGCCTCGGGCATCCAGGGCCTGGCCAGGTGAGCTGTCC CGGGGCCTCGGGCATCCAGAGCCTGGCCAGGTGAGCTGTCC < 41bp 0.559309305538382 0.774688408739223 NA NA prediction 0.430758206401681 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5914491 chr19:5914490 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_26696 0 0 0 0 2 CAPS chr19:5914396 3'AG 5914396 Downstream 95bp 24298 chr19 5914490 5914490 1 + G A BLCA 5914491 + 5914471 5914511 41 CGGGGCCTCGGGCATCCAGGGCCTGGCCAGGTGAGCTGTCC CGGGGCCTCGGGCATCCAGAGCCTGGCCAGGTGAGCTGTCC < 41bp 0.559309305538382 0.774688408739223 NA NA prediction 0.430758206401681 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5914491 chr19:5914490 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_26696 0 0 0 0 2 CAPS chr19:5914500 5'GT 5914500 Upstream 11bp 24299 chr3 51624571 51624571 1 + G T UCEC 51624572 + 51624552 51624592 41 ATGATGAAGAAGACCTGCTGGATGGTAAGTGGGCTCTATTG ATGATGAAGAAGACCTGCTTGATGGTAAGTGGGCTCTATTG < 41bp 0.38943616436241 0.715378921682201 NA NA prediction 0.430757843364402 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51624572 chr3:51624571 synonymous SNV . 0 20 hm7G_associated_SNPs_26697 0 0 1 0 1 RAD54L2 chr3:51624575 5'GT 51624575 Upstream 5bp 24300 chr1 63069830 63069830 1 + G T UCEC 63069831 + 63069811 63069851 41 ATGTCCCCAATGCAATCCCGGAAAACAAAGATTTGGTGTTT ATGTCCCCAATGCAATCCCTGAAAACAAAGATTTGGTGTTT < 41bp 0.663707990175301 0.8790843753064 NA NA prediction 0.430752770262198 Functional Gain - ANGPTL3 ENSG00000132855 CDS Human protein_coding chr1:63069831 chr1:63069830 synonymous SNV . 0 20 hm7G_associated_SNPs_26698 0 0 0 0 1 ANGPTL3 chr1:63069906 5'GT 63069906 Upstream 77bp 24301 chr11 64367184 64367184 1 + G A UCEC 64367185 + 64367165 64367205 41 CCTTCTTCGGCCTGGCCCTGGACCTGCAGGCCCTGGGCAGC CCTTCTTCGGCCTGGCCCTAGACCTGCAGGCCCTGGGCAGC < 41bp 0.515611653552782 0.730983694818156 NA NA prediction 0.430744082530746 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64367185 chr11:64367184 synonymous SNV . 0 20 hm7G_associated_SNPs_26699 0 0 0 0 1 SLC22A12 chr11:64367148 3'AG 64367148 Downstream 37bp 24302 chr16 57600568 57600568 1 + G A SKCM 57600569 + 57600549 57600589 41 AGCCAGGAAACAGCCCTGGGGGGGCTGGAGCCCTGAGGGCT AGCCAGGAAACAGCCCTGGAGGGGCTGGAGCCCTGAGGGCT < 41bp 0.544464552418855 0.75982658956262 NA NA prediction 0.430724074287529 Functional Gain - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57600569 chr16:57600568 nonsynonymous SNV 0.689 3 20 hm7G_associated_SNPs_26700 0 0 0 0 2 ADGRG5 chr16:57600511 3'AG 57600511 Downstream 58bp 24303 chr16 57600568 57600568 1 + G A SKCM 57600569 + 57600549 57600589 41 AGCCAGGAAACAGCCCTGGGGGGGCTGGAGCCCTGAGGGCT AGCCAGGAAACAGCCCTGGAGGGGCTGGAGCCCTGAGGGCT < 41bp 0.544464552418855 0.75982658956262 NA NA prediction 0.430724074287529 Functional Gain - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57600569 chr16:57600568 nonsynonymous SNV 0.689 3 20 hm7G_associated_SNPs_26700 0 0 0 0 2 ADGRG5 chr16:57600663 5'GT 57600663 Upstream 96bp 24304 chr2 131129881 131129881 1 + G A rs560219406 131129882 + 131129862 131129902 41 CCATGGCTGACACCTACGCGGTGGTGCAGAAGCGCGGGGCT CCATGGCTGACACCTACGCAGTGGTGCAGAAGCGCGGGGCT < 41bp 0.491915159684935 0.715361902245922 NA NA prediction 0.430723804491844 Functional Gain - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131129882 chr2:131129881 synonymous SNV . 0 20 hm7G_associated_SNPs_26701 0 0 1 0 1 PTPN18 chr2:131129830 3'AG 131129830 Downstream 52bp 24305 chr1 29649925 29649925 1 + G A SKCM 29649926 + 29649906 29649946 41 GCCAGGCCGGCAGCAATATGGCCTCATGGAGGTGGAGTTTA GCCAGGCCGGCAGCAATATAGCCTCATGGAGGTGGAGTTTA < 41bp 0.496654990241319 0.715346721241246 NA NA prediction 0.430693442482492 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29649926 chr1:29649925 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26704 0 0 1 0 2 PTPRU chr1:29649883 3'AG 29649883 Downstream 43bp 24306 chr1 29649925 29649925 1 + G A SKCM 29649926 + 29649906 29649946 41 GCCAGGCCGGCAGCAATATGGCCTCATGGAGGTGGAGTTTA GCCAGGCCGGCAGCAATATAGCCTCATGGAGGTGGAGTTTA < 41bp 0.496654990241319 0.715346721241246 NA NA prediction 0.430693442482492 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29649926 chr1:29649925 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_26704 0 0 1 0 2 PTPRU chr1:29650008 5'GT 29650008 Upstream 84bp 24307 chr7 141794549 141794549 1 + G T HNSC 141794550 + 141794530 141794570 41 ATTTCCTCTTGTTTCAGACGGGAGCAGATATCTGTGGGTTC ATTTCCTCTTGTTTCAGACTGGAGCAGATATCTGTGGGTTC < 41bp 0.396907107200304 0.71533866767432 NA NA prediction 0.430677335348641 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141794550 chr7:141794549 synonymous SNV . 0 20 hm7G_associated_SNPs_26706 0 0 0 0 1 MGAM chr7:141794547 3'AG 141794547 Downstream 3bp 24308 chr17 79954650 79954650 1 + G A ESCA 79954651 + 79954631 79954671 41 AGCCAAAGAAGTCCAAGTCGGGCCAGGATCCCCAGCAGGAG AGCCAAAGAAGTCCAAGTCAGGCCAGGATCCCCAGCAGGAG < 41bp 0.542844340495682 0.758182914629377 NA NA prediction 0.430677148267392 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79954651 chr17:79954650 synonymous SNV . 0 20 hm7G_associated_SNPs_26707 0 0 1 0 1 ASPSCR1 chr17:79954722 5'GT 79954722 Upstream 73bp 24309 chr12 110566905 110566905 1 + G T HNSC 110566906 + 110566886 110566926 41 TACCAAGTGAGTTTCTTCAGGATGAAACTGTGGCTGACACC TACCAAGTGAGTTTCTTCATGATGAAACTGTGGCTGACACC < 41bp 0.672678779768478 0.888013103066944 NA NA prediction 0.430668646596932 Functional Gain - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110566906 chr12:110566905 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_26709 0 0 1 0 1 IFT81 chr12:110566935 5'GT 110566935 Upstream 31bp 24310 chr16 8729117 8729117 1 + G A rs35774820 8729118 + 8729098 8729138 41 TGGAGCTCGGGGCCGGCACGGGGCTCGCTAGCATCATCGCA TGGAGCTCGGGGCCGGCACAGGGCTCGCTAGCATCATCGCA < 41bp 0.525143749323425 0.740472205037269 NA NA prediction 0.430656911427687 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8729118 chr16:8729117 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26711 0 0 1 0 2 METTL22 chr16:8729025 3'AG 8729025 Downstream 93bp 24311 chr16 8729117 8729117 1 + G A rs35774820 8729118 + 8729098 8729138 41 TGGAGCTCGGGGCCGGCACGGGGCTCGCTAGCATCATCGCA TGGAGCTCGGGGCCGGCACAGGGCTCGCTAGCATCATCGCA < 41bp 0.525143749323425 0.740472205037269 NA NA prediction 0.430656911427687 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8729118 chr16:8729117 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26711 0 0 1 0 2 METTL22 chr16:8729169 5'GT 8729169 Upstream 53bp 24312 chr19 46811970 46811970 1 + C T UCEC 46811971 + 46811951 46811991 41 GGAGCGGTGCTTCTCCTTGCGCATGAAGAGTACACTCACCA GGAGCGGTGCTTCTCCTTGTGCATGAAGAGTACACTCACCA < 41bp 0.499915475984147 0.71531553198854 NA NA prediction 0.43063106397708 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46811971 chr19:46811970 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_26713 0 0 0 2 2 HIF3A chr19:46811920 3'AG 46811920 Downstream 51bp 24313 chr19 46811970 46811970 1 + C T UCEC 46811971 + 46811951 46811991 41 GGAGCGGTGCTTCTCCTTGCGCATGAAGAGTACACTCACCA GGAGCGGTGCTTCTCCTTGTGCATGAAGAGTACACTCACCA < 41bp 0.499915475984147 0.71531553198854 NA NA prediction 0.43063106397708 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46811971 chr19:46811970 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_26713 0 0 0 2 2 HIF3A chr19:46812032 5'GT 46812032 Upstream 63bp 24314 chr2 241569413 241569413 1 + G T LUSC 241569414 + 241569394 241569434 41 GGCTCCAGCGACCTCACCTGGCCCCCAGCGATCAAGCTGGG GGCTCCAGCGACCTCACCTTGCCCCCAGCGATCAAGCTGGG < 41bp 0.374121039632316 0.715308825386429 NA NA prediction 0.430617650772859 Functional Gain - GPR35 ENSG00000178623 CDS Human protein_coding chr2:241569414 chr2:241569413 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_26714 0 0 0 0 1 GPR35 chr2:241569366 3'AG 241569366 Downstream 48bp 24315 chr7 139225107 139225107 1 + G A rs374364700 139225108 + 139225088 139225128 41 GCGAAGCGCCCTGCCCGGAGGACTGGCTGCTCTACGGAAGG GCGAAGCGCCCTGCCCGGAAGACTGGCTGCTCTACGGAAGG < 41bp 0.507363996214065 0.722669062894798 NA NA prediction 0.430610133361466 Functional Gain - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139225108 chr7:139225107 synonymous SNV . 0 20 hm7G_associated_SNPs_26715 0 0 0 0 1 CLEC2L chr7:139225067 3'AG 139225067 Downstream 41bp 24316 chr12 110013921 110013921 1 + G A UCEC 110013922 + 110013902 110013942 41 CGGGCCTGGGATGTGGCCAGGCTTCAGTCACTGGACACAAG CGGGCCTGGGATGTGGCCAAGCTTCAGTCACTGGACACAAG < 41bp 0.520635254105746 0.735933981136129 NA NA prediction 0.430597454060767 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110013922 chr12:110013921 nonsynonymous SNV 0.427 1 20 hm7G_associated_SNPs_26716 0 0 1 1 1 MVK chr12:110013950 5'GT 110013950 Upstream 30bp 24317 chr2 131785625 131785625 1 + G T LUAD 131785626 + 131785606 131785646 41 CCACCACTACAGCCACCCTGGAGGGGGTGGGGAGCAGCTGG CCACCACTACAGCCACCCTTGAGGGGGTGGGGAGCAGCTGG < 41bp 0.358252183342982 0.715282969156404 NA NA prediction 0.430565938312809 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131785626 chr2:131785625 stopgain 0.844 1 20 hm7G_associated_SNPs_26717 0 0 0 0 1 ARHGEF4 chr2:131785657 5'GT 131785657 Upstream 33bp 24318 chr11 61503268 61503268 1 + G A UCEC 61503269 + 61503249 61503289 41 CCCCGTGGAGGGGCACCACGGCACCTGGCTGGGCCACAAGG CCCCGTGGAGGGGCACCACAGCACCTGGCTGGGCCACAAGG < 41bp 0.563766949412121 0.779047750852735 NA NA prediction 0.430561602881227 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503269 chr11:61503268 nonsynonymous SNV 0.795 3 20 hm7G_associated_SNPs_26718 0 0 1 0 2 DAGLA chr11:61503211 3'AG 61503211 Downstream 58bp 24319 chr11 61503268 61503268 1 + G A UCEC 61503269 + 61503249 61503289 41 CCCCGTGGAGGGGCACCACGGCACCTGGCTGGGCCACAAGG CCCCGTGGAGGGGCACCACAGCACCTGGCTGGGCCACAAGG < 41bp 0.563766949412121 0.779047750852735 NA NA prediction 0.430561602881227 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503269 chr11:61503268 nonsynonymous SNV 0.795 3 20 hm7G_associated_SNPs_26718 0 0 1 0 2 DAGLA chr11:61503288 5'GT 61503288 Upstream 21bp 24320 chr3 154884756 154884756 1 + G T LUAD 154884757 + 154884737 154884777 41 GTCCAACTCATTGAACTATGGGGGCATCGGCATGGTCATAG GTCCAACTCATTGAACTATTGGGGCATCGGCATGGTCATAG < 41bp 0.379175831549779 0.715280742604558 NA NA prediction 0.430561485209117 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154884757 chr3:154884756 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_26719 0 0 0 0 2 MME chr3:154884691 3'AG 154884691 Downstream 66bp 24321 chr3 154884756 154884756 1 + G T LUAD 154884757 + 154884737 154884777 41 GTCCAACTCATTGAACTATGGGGGCATCGGCATGGTCATAG GTCCAACTCATTGAACTATTGGGGCATCGGCATGGTCATAG < 41bp 0.379175831549779 0.715280742604558 NA NA prediction 0.430561485209117 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154884757 chr3:154884756 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_26719 0 0 0 0 2 MME chr3:154884810 5'GT 154884810 Upstream 55bp 24322 chr9 132627616 132627616 1 + G A SKCM 132627617 + 132627597 132627637 41 CCCCACCAGTCTGTCTCATGGGATCAAGTTGGTCAACCCAA CCCCACCAGTCTGTCTCATAGGATCAAGTTGGTCAACCCAA < 41bp 0.52556642731102 0.740836731299479 NA NA prediction 0.430540607976919 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132627617 chr9:132627616 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_26720 0 0 0 0 2 USP20 chr9:132627582 3'AG 132627582 Downstream 35bp 24323 chr9 132627616 132627616 1 + G A SKCM 132627617 + 132627597 132627637 41 CCCCACCAGTCTGTCTCATGGGATCAAGTTGGTCAACCCAA CCCCACCAGTCTGTCTCATAGGATCAAGTTGGTCAACCCAA < 41bp 0.52556642731102 0.740836731299479 NA NA prediction 0.430540607976919 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132627617 chr9:132627616 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_26720 0 0 0 0 2 USP20 chr9:132627660 5'GT 132627660 Upstream 45bp 24324 chr19 3543849 3543849 1 + G A rs537057412 3543850 + 3543830 3543870 41 TCAACAGGAACCGGTACGGGGTGGAGCCACTGTGGAGGGCA TCAACAGGAACCGGTACGGAGTGGAGCCACTGTGGAGGGCA < 41bp 0.494266960055297 0.715267329450611 NA NA prediction 0.430534658901222 Functional Gain - C19orf71 ENSG00000183397 CDS Human protein_coding chr19:3543850 chr19:3543849 synonymous SNV . 0 20 hm7G_associated_SNPs_26721 0 0 1 0 1 C19orf71 chr19:3543827 3'AG 3543827 Downstream 23bp 24325 chr1 26511596 26511596 1 + G A rs372250065 26511597 + 26511577 26511617 41 TCCTGTTGCGAAAGGCACCGGGCGGCTTCATGGGCCCGCGC TCCTGTTGCGAAAGGCACCAGGCGGCTTCATGGGCCCGCGC < 41bp 0.487863987512197 0.715265911040184 NA NA prediction 0.430531822080369 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26511597 chr1:26511596 synonymous SNV . 0 20 hm7G_associated_SNPs_26722 0 0 0 0 1 CNKSR1 chr1:26511505 3'AG 26511505 Downstream 92bp 24326 chr7 803546 803546 1 + C T rs199552751 803547 + 803527 803567 41 CTGGAGCGGGTGACCGCGTCGCACCTTGACTGGACCGCACA CTGGAGCGGGTGACCGCGTTGCACCTTGACTGGACCGCACA < 41bp 0.511715966025003 0.726979106961249 NA NA prediction 0.430526281872492 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:803547 chr7:803546 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_26723 0 0 1 0 1 DNAAF5 chr7:803611 5'GT 803611 Upstream 66bp 24327 chr1 161138347 161138347 1 + G A SKCM 161138348 + 161138328 161138368 41 CCCATCGTTCCATATTACTGGGCCTGCTGCTGGGGGCAGGT CCCATCGTTCCATATTACTAGGCCTGCTGCTGGGGGCAGGT < 41bp 0.525136514371524 0.740393758843196 NA NA prediction 0.430514488943345 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161138348 chr1:161138347 synonymous SNV . 0 20 hm7G_associated_SNPs_26724 0 0 1 0 1 PPOX chr1:161138366 5'GT 161138366 Upstream 20bp 24328 chr16 2028207 2028207 1 + G A STAD 2028208 + 2028188 2028228 41 GCCACCATGCTCCGACTGCGGCGCGACCAGAAAGGTTGGCG GCCACCATGCTCCGACTGCAGCGCGACCAGAAAGGTTGGCG < 41bp 0.490352751691222 0.71524687007351 NA NA prediction 0.43049374014702 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2028208 chr16:2028207 nonsynonymous SNV 0.377 0 20 hm7G_associated_SNPs_26727 0 0 1 0 2 TBL3 chr16:2028150 3'AG 2028150 Downstream 58bp 24329 chr16 2028207 2028207 1 + G A STAD 2028208 + 2028188 2028228 41 GCCACCATGCTCCGACTGCGGCGCGACCAGAAAGGTTGGCG GCCACCATGCTCCGACTGCAGCGCGACCAGAAAGGTTGGCG < 41bp 0.490352751691222 0.71524687007351 NA NA prediction 0.43049374014702 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2028208 chr16:2028207 nonsynonymous SNV 0.377 0 20 hm7G_associated_SNPs_26727 0 0 1 0 2 TBL3 chr16:2028221 5'GT 2028221 Upstream 15bp 24330 chr1 153659534 153659534 1 + C T LUSC 153659535 + 153659515 153659555 41 CACCCTGGACTGGATGTTCCGGTACTCACTCACCAATGACA CACCCTGGACTGGATGTTCTGGTACTCACTCACCAATGACA < 41bp 0.513471894486589 0.728718510217941 NA NA prediction 0.430493231462703 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153659535 chr1:153659534 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_26728 0 0 0 0 2 NPR1 chr1:153659492 3'AG 153659492 Downstream 43bp 24331 chr1 153659534 153659534 1 + C T LUSC 153659535 + 153659515 153659555 41 CACCCTGGACTGGATGTTCCGGTACTCACTCACCAATGACA CACCCTGGACTGGATGTTCTGGTACTCACTCACCAATGACA < 41bp 0.513471894486589 0.728718510217941 NA NA prediction 0.430493231462703 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153659535 chr1:153659534 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_26728 0 0 0 0 2 NPR1 chr1:153659563 5'GT 153659563 Upstream 30bp 24332 chr6 43030663 43030663 1 + G T LUAD 43030664 + 43030644 43030684 41 TGCCCACCTAGGTGATGCTGGCTCTAGCCAGCCACCTGAGC TGCCCACCTAGGTGATGCTTGCTCTAGCCAGCCACCTGAGC < 41bp 0.362999728810533 0.715244392472189 NA NA prediction 0.430488784944378 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43030664 chr6:43030663 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26729 0 0 1 0 2 KLC4 chr6:43030624 3'AG 43030624 Downstream 40bp 24333 chr6 43030663 43030663 1 + G T LUAD 43030664 + 43030644 43030684 41 TGCCCACCTAGGTGATGCTGGCTCTAGCCAGCCACCTGAGC TGCCCACCTAGGTGATGCTTGCTCTAGCCAGCCACCTGAGC < 41bp 0.362999728810533 0.715244392472189 NA NA prediction 0.430488784944378 Functional Gain - KLC4 ENSG00000137171 CDS Human protein_coding chr6:43030664 chr6:43030663 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26729 0 0 1 0 2 KLC4 chr6:43030655 3'AG 43030655 Downstream 9bp 24334 chr11 118997796 118997796 1 + G A LUAD 118997797 + 118997777 118997817 41 GCAGCACCTGCATGGCTCTGGGGAGGAGGAGGAAGAGGAAG GCAGCACCTGCATGGCTCTAGGGAGGAGGAGGAAGAGGAAG < 41bp 0.522577212619884 0.737819280477796 NA NA prediction 0.430484135715823 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:118997797 chr11:118997796 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_26730 0 0 1 0 1 HINFP chr11:118997835 5'GT 118997835 Upstream 40bp 24335 chr13 24895224 24895224 1 + G A HNSC 24895225 + 24895205 24895245 41 GGCCCCAAGGGGCTTGCAGGGCCCATGGGAGAGAAGGGCCT GGCCCCAAGGGGCTTGCAGAGCCCATGGGAGAGAAGGGCCT < 41bp 0.51490868131384 0.730147710845119 NA NA prediction 0.430478059062558 Functional Gain - C1QTNF9 ENSG00000240654 CDS Human protein_coding chr13:24895225 chr13:24895224 nonsynonymous SNV 0.307 5 20 hm7G_associated_SNPs_26732 0 0 0 0 1 C1QTNF9 chr13:24895134 3'AG 24895134 Downstream 91bp 24336 chr1 175116078 175116078 1 + G T UCEC 175116079 + 175116059 175116099 41 TTTGGTAGGGGGTGAACTGGGAGCCTTGGAAAGGACATGAA TTTGGTAGGGGGTGAACTGTGAGCCTTGGAAAGGACATGAA < 41bp 0.673290940759522 0.888522133956777 NA NA prediction 0.430462386394511 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175116079 chr1:175116078 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_26736 0 0 0 0 1 TNN chr1:175116067 3'AG 175116067 Downstream 12bp 24337 chr22 37318318 37318318 1 + G A rs76140753 37318319 + 37318299 37318339 41 GGGAGCGCAGCCTGGCAGGGGCAGAAGGTGAGTCCCGTGGC GGGAGCGCAGCCTGGCAGGAGCAGAAGGTGAGTCCCGTGGC < 41bp 0.515967162556335 0.731195676474239 NA NA prediction 0.430457027835808 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37318319 chr22:37318318 synonymous SNV . 0 20 hm7G_associated_SNPs_26738 0 0 0 0 1 CSF2RB chr22:37318325 5'GT 37318325 Upstream 8bp 24338 chr20 44430077 44430077 1 + G T OV 44430078 + 44430058 44430098 41 AGAAGAATGTGCCCATCGAGGAAGCCCCCTTCCTAAAAAGG AGAAGAATGTGCCCATCGATGAAGCCCCCTTCCTAAAAAGG < 41bp 0.365233576174045 0.715209179792045 NA NA prediction 0.43041835958409 Functional Gain - DNTTIP1 ENSG00000101457 CDS Human protein_coding chr20:44430078 chr20:44430077 stopgain 1.000 1 20 hm7G_associated_SNPs_26741 0 0 1 0 1 DNTTIP1 chr20:44430097 5'GT 44430097 Upstream 21bp 24339 chr16 1291656 1291656 1 + G A SKCM 1291657 + 1291637 1291677 41 TCAGAGACCTTCCCCCCGGGGATGCCGTGCTGGGTCACTGG TCAGAGACCTTCCCCCCGGAGATGCCGTGCTGGGTCACTGG < 41bp 0.534241056861068 0.749434615745152 NA NA prediction 0.430387117768168 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291657 chr16:1291656 nonsynonymous SNV 0.101 1 20 hm7G_associated_SNPs_26743 0 0 0 0 1 TPSAB1 chr16:1291700 5'GT 1291700 Upstream 45bp 24340 chr19 51983658 51983658 1 + G A SKCM 51983659 + 51983639 51983679 41 CCAAACCCTGGGGATCAAGGGATATCGGACTGTCGTGGCCC CCAAACCCTGGGGATCAAGAGATATCGGACTGTCGTGGCCC < 41bp 0.503571720227466 0.718762597532251 NA NA prediction 0.430381754609571 Functional Gain - CEACAM18 ENSG00000213822 CDS Human protein_coding chr19:51983659 chr19:51983658 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_26744 0 0 0 0 1 CEACAM18 chr19:51983587 3'AG 51983587 Downstream 72bp 24341 chr19 30017512 30017512 1 + G A UCEC 30017513 + 30017493 30017533 41 GGAACAGCGGAACCGGCTCGGTGCCCTCGGATACCTGCCGC GGAACAGCGGAACCGGCTCAGTGCCCTCGGATACCTGCCGC < 41bp 0.499829869997799 0.715187268446589 NA NA prediction 0.430374536893178 Functional Gain - VSTM2B ENSG00000187135 CDS Human protein_coding chr19:30017513 chr19:30017512 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_26745 0 0 0 0 1 VSTM2B chr19:30017572 5'GT 30017572 Upstream 61bp 24342 chr17 7405282 7405282 1 + C T UCEC 7405283 + 7405263 7405303 41 TCCATTTGGCTTCAAGCACCGGACTCTGCCTCACTTCATCA TCCATTTGGCTTCAAGCACTGGACTCTGCCTCACTTCATCA < 41bp 0.500666022878125 0.715842943512045 NA NA prediction 0.430353841267842 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7405283 chr17:7405282 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26747 0 0 1 0 1 POLR2A chr17:7405219 3'AG 7405219 Downstream 64bp 24343 chr19 2408530 2408530 1 + G A rs62120714 2408531 + 2408511 2408551 41 AGCCCTCTGCCTTTCGGCCGGCACATCCAGCCCGTGTGCCT AGCCCTCTGCCTTTCGGCCAGCACATCCAGCCCGTGTGCCT < 41bp 0.482576286644019 0.715169868026453 NA NA prediction 0.430339736052905 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2408531 chr19:2408530 nonsynonymous SNV 0.049 1 20 hm7G_associated_SNPs_26748 0 0 0 0 1 TMPRSS9 chr19:2408628 5'GT 2408628 Upstream 99bp 24344 chr4 1918661 1918661 1 + G T PCPG 1918662 + 1918642 1918682 41 GACGCCCCAGAAAGAGCTTGGATATTTGAGAAGAGCCTCGT GACGCCCCAGAAAGAGCTTTGATATTTGAGAAGAGCCTCGT < 41bp 0.40002966771806 0.715167098662565 NA NA prediction 0.430334197325129 Functional Gain - NSD2 ENSG00000109685 CDS Human protein_coding chr4:1918662 chr4:1918661 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26749 0 0 1 0 1 NSD2 chr4:1918598 3'AG 1918598 Downstream 64bp 24345 chr19 45781188 45781188 1 + G A GBM 45781189 + 45781169 45781209 41 CCATCCCTGCAGGAGCTGCGGGAGCGAGTACTCAGAGGGAA CCATCCCTGCAGGAGCTGCAGGAGCGAGTACTCAGAGGGAA < 41bp 0.509627760395461 0.724793008515497 NA NA prediction 0.430330496240071 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45781189 chr19:45781188 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26750 0 0 0 0 1 MARK4 chr19:45781181 3'AG 45781181 Downstream 8bp 24346 chrX 48369767 48369767 1 + G T LGG 48369768 + 48369748 48369788 41 TTCCAGCTGCACATGGTTTGGGTCGTGCTGCTCAGCCTCCT TTCCAGCTGCACATGGTTTTGGTCGTGCTGCTCAGCCTCCT < 41bp 0.677008513644748 0.892168943768968 NA NA prediction 0.430320860248439 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48369768 chrX:48369767 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_26752 0 0 1 0 1 PORCN chrX:48369754 3'AG 48369754 Downstream 14bp 24347 chr19 36607038 36607038 1 + G T UCEC 36607039 + 36607019 36607059 41 ACAGCAAGCTGGATCAAGAGGATGCGCTCCTGGGCTCCTAC ACAGCAAGCTGGATCAAGATGATGCGCTCCTGGGCTCCTAC < 41bp 0.691052488269233 0.906212638276611 NA NA prediction 0.430320300014757 Functional Gain - TBCB ENSG00000105254 CDS Human protein_coding chr19:36607039 chr19:36607038 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_26753 0 0 1 0 1 TBCB chr19:36607086 5'GT 36607086 Upstream 49bp 24348 chr19 45182170 45182170 1 + G A rs140104524 45182171 + 45182151 45182191 41 CTCTGTCCATCTTGTGCTCGGCTGTATCCCCAGTGCCTTCA CTCTGTCCATCTTGTGCTCAGCTGTATCCCCAGTGCCTTCA < 41bp 0.551009291426463 0.766163163286836 NA NA prediction 0.430307743720746 Functional Gain - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45182171 chr19:45182170 synonymous SNV . 0 20 hm7G_associated_SNPs_26755 0 0 0 0 2 CEACAM19 chr19:45182125 3'AG 45182125 Downstream 46bp 24349 chr19 45182170 45182170 1 + G A rs140104524 45182171 + 45182151 45182191 41 CTCTGTCCATCTTGTGCTCGGCTGTATCCCCAGTGCCTTCA CTCTGTCCATCTTGTGCTCAGCTGTATCCCCAGTGCCTTCA < 41bp 0.551009291426463 0.766163163286836 NA NA prediction 0.430307743720746 Functional Gain - CEACAM19 ENSG00000186567 CDS Human protein_coding chr19:45182171 chr19:45182170 synonymous SNV . 0 20 hm7G_associated_SNPs_26755 0 0 0 0 2 CEACAM19 chr19:45182208 5'GT 45182208 Upstream 39bp 24350 chr17 41165177 41165177 1 + G A STAD 41165178 + 41165158 41165198 41 TCCACTGCCCTCTGCTTGCGGGCTCTGCTCTGATCACCTTT TCCACTGCCCTCTGCTTGCAGGCTCTGCTCTGATCACCTTT < 41bp 0.52074368151341 0.735893196749419 NA NA prediction 0.430299030472018 Functional Gain - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165178 chr17:41165177 synonymous SNV . 0 20 hm7G_associated_SNPs_26756 0 0 1 0 1 IFI35 chr17:41165211 5'GT 41165211 Upstream 35bp 24351 chr7 6656830 6656830 1 + G A rs2243563 6656831 + 6656811 6656851 41 TTCAGCACAGCCGACTCCCGGGAATCGGGGTCTGACCGCCA TTCAGCACAGCCGACTCCCAGGAATCGGGGTCTGACCGCCA < 41bp 0.555114776192166 0.770263731613162 NA NA prediction 0.430297910841992 Functional Gain - ZNF853 ENSG00000236609 CDS Human protein_coding chr7:6656831 chr7:6656830 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_26757 0 0 0 0 1 ZNF853 chr7:6656821 3'AG 6656821 Downstream 10bp 24352 chr11 57457548 57457548 1 + C T UCEC 57457549 + 57457529 57457569 41 GAATAACTGTATTGGTCGCCGGAACTACCGTTATTTTTTCC GAATAACTGTATTGGTCGCTGGAACTACCGTTATTTTTTCC < 41bp 0.506922041952364 0.722067695629414 NA NA prediction 0.430291307354101 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57457549 chr11:57457548 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_26758 0 0 1 0 1 ZDHHC5 chr11:57457503 3'AG 57457503 Downstream 46bp 24353 chr5 161938 161938 1 + C T COAD 161939 + 161919 161959 41 CAGCTGGCGAAGGAGAACCCGCAACGTACAGAGGAAATGGT CAGCTGGCGAAGGAGAACCTGCAACGTACAGAGGAAATGGT < 41bp 0.519610045709256 0.734755054152981 NA NA prediction 0.430290016887452 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:161939 chr5:161938 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_26759 0 0 0 0 1 PLEKHG4B chr5:161898 3'AG 161898 Downstream 41bp 24354 chr17 7253301 7253301 1 + G T OV 7253302 + 7253282 7253322 41 GAGTTTCTCCTCCAGAACGGGGCGAACGTGAACCAAGCGGA GAGTTTCTCCTCCAGAACGTGGCGAACGTGAACCAAGCGGA < 41bp 0.694172027739248 0.909313622323713 NA NA prediction 0.430283189168929 Functional Gain - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7253302 chr17:7253301 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_26761 0 0 0 0 2 ACAP1 chr17:7253264 3'AG 7253264 Downstream 38bp 24355 chr17 7253301 7253301 1 + G T OV 7253302 + 7253282 7253322 41 GAGTTTCTCCTCCAGAACGGGGCGAACGTGAACCAAGCGGA GAGTTTCTCCTCCAGAACGTGGCGAACGTGAACCAAGCGGA < 41bp 0.694172027739248 0.909313622323713 NA NA prediction 0.430283189168929 Functional Gain - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7253302 chr17:7253301 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_26761 0 0 0 0 2 ACAP1 chr17:7253373 5'GT 7253373 Upstream 73bp 24356 chr6 18212821 18212821 1 + G T COAD 18212822 + 18212802 18212842 41 TATCAACAGCTTAGGCGCAGGCATCATTGAAAAGGTGACTG TATCAACAGCTTAGGCGCATGCATCATTGAAAAGGTGACTG < 41bp 0.684739348880018 0.899871059727976 NA NA prediction 0.430263421695917 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18212822 chr6:18212821 nonsynonymous SNV 0.870 5 20 hm7G_associated_SNPs_26765 0 0 0 0 1 KDM1B chr6:18212835 5'GT 18212835 Upstream 15bp 24357 chr22 29704131 29704131 1 + G A rs148534591 29704132 + 29704112 29704152 41 CGGGCATCGCGGGCTCGGCGGCCAAGAGCGTGCGGCCATTT CGGGCATCGCGGGCTCGGCAGCCAAGAGCGTGCGGCCATTT < 41bp 0.540516552613075 0.755636001168143 NA NA prediction 0.430238897110136 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29704132 chr22:29704131 synonymous SNV . 0 20 hm7G_associated_SNPs_26766 0 0 0 0 2 GAS2L1 chr22:29704049 3'AG 29704049 Downstream 83bp 24358 chr22 29704131 29704131 1 + G A rs148534591 29704132 + 29704112 29704152 41 CGGGCATCGCGGGCTCGGCGGCCAAGAGCGTGCGGCCATTT CGGGCATCGCGGGCTCGGCAGCCAAGAGCGTGCGGCCATTT < 41bp 0.540516552613075 0.755636001168143 NA NA prediction 0.430238897110136 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29704132 chr22:29704131 synonymous SNV . 0 20 hm7G_associated_SNPs_26766 0 0 0 0 2 GAS2L1 chr22:29704077 3'AG 29704077 Downstream 55bp 24359 chr16 56485605 56485605 1 + G T UCEC 56485606 + 56485586 56485626 41 AGGTGATGGCGGAGTTTTCGGACGCTGTTACGGAAGAAACC AGGTGATGGCGGAGTTTTCTGACGCTGTTACGGAAGAAACC < 41bp 0.677155082352995 0.89227378062638 NA NA prediction 0.43023739654677 Functional Gain - OGFOD1 ENSG00000087263 CDS Human protein_coding chr16:56485606 chr16:56485605 synonymous SNV . 0 20 hm7G_associated_SNPs_26767 0 0 1 0 1 OGFOD1 chr16:56485678 5'GT 56485678 Upstream 74bp 24360 chr9 135929830 135929830 1 + C T STAD 135929831 + 135929811 135929851 41 CTTGCCGGTCAAAGCAAAGCGCAGCACCTACAACTACAGCC CTTGCCGGTCAAAGCAAAGTGCAGCACCTACAACTACAGCC < 41bp 0.50970487684485 0.724821244595639 NA NA prediction 0.430232735501579 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929831 chr9:135929830 nonsynonymous SNV 0.978 3 20 hm7G_associated_SNPs_26768 0 0 1 0 2 GTF3C5 chr9:135929795 3'AG 135929795 Downstream 36bp 24361 chr9 135929830 135929830 1 + C T STAD 135929831 + 135929811 135929851 41 CTTGCCGGTCAAAGCAAAGCGCAGCACCTACAACTACAGCC CTTGCCGGTCAAAGCAAAGTGCAGCACCTACAACTACAGCC < 41bp 0.50970487684485 0.724821244595639 NA NA prediction 0.430232735501579 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135929831 chr9:135929830 nonsynonymous SNV 0.978 3 20 hm7G_associated_SNPs_26768 0 0 1 0 2 GTF3C5 chr9:135929875 5'GT 135929875 Upstream 46bp 24362 chr11 31838181 31838181 1 + G A rs495902 31838182 + 31838162 31838202 41 CCGCGGAGGAGAGGATCCCGGCCCAGGTAAGGCGTGCGGCC CCGCGGAGGAGAGGATCCCAGCCCAGGTAAGGCGTGCGGCC < 41bp 0.491598081972927 0.715104108665963 NA NA prediction 0.430208217331925 Functional Gain - PAX6-AS1 ENSG00000049449 CDS Human protein_coding chr11:31838182 chr11:31838181 nonsynonymous SNV 0.108 1 20 hm7G_associated_SNPs_26770 0 0 0 0 1 PAX6-AS1 chr11:31838187 5'GT 31838187 Upstream 7bp 24363 chr16 55559549 55559549 1 + G T SARC 55559550 + 55559530 55559570 41 GCTGACCCACCCAATAACTGGTTGGAGGAGGTAAGAAATAA GCTGACCCACCCAATAACTTGTTGGAGGAGGTAAGAAATAA < 41bp 0.39476160801527 0.715102106708783 NA NA prediction 0.430204213417567 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55559550 chr16:55559549 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_26771 0 0 0 0 1 LPCAT2 chr16:55559559 5'GT 55559559 Upstream 11bp 24364 chr1 16383415 16383415 1 + G A rs112496366 16383416 + 16383396 16383436 41 GCCAGCCCCAAAGTGAGCCGGCCCAGCAAGATGAAACAGGG GCCAGCCCCAAAGTGAGCCAGCCCAGCAAGATGAAACAGGG < 41bp 0.5131643047997 0.728257745775089 NA NA prediction 0.430186881950779 Functional Gain - CLCNKB ENSG00000184908 UTR3 Human protein_coding chr1:16383416 chr1:16383415 . . 0 20 hm7G_associated_SNPs_26774 0 0 0 0 1 CLCNKB chr1:16383364 3'AG 16383364 Downstream 52bp 24365 chr15 45697670 45697670 1 + G T LUSC 45697671 + 45697651 45697691 41 TGACAGCACTCTGTAGGGAGGCTGCCATGCATGCCCTCCTT TGACAGCACTCTGTAGGGATGCTGCCATGCATGCCCTCCTT < 41bp 0.686277055216904 0.901366482655152 NA NA prediction 0.430178854876496 Functional Gain - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45697671 chr15:45697670 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_26775 0 0 1 0 1 SPATA5L1 chr15:45697703 5'GT 45697703 Upstream 34bp 24366 chr17 31258574 31258574 1 + G T LUAD 31258575 + 31258555 31258595 41 TGTGGTGATTGTTGCCATAGGTGTGCTGGCCACCATCTTTC TGTGGTGATTGTTGCCATATGTGTGCTGGCCACCATCTTTC < 41bp 0.374501826113779 0.715085489769578 NA NA prediction 0.430170979539157 Functional Gain - TMEM98 ENSG00000006042 CDS Human protein_coding chr17:31258575 chr17:31258574 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_26776 0 0 1 0 1 TMEM98 chr17:31258493 3'AG 31258493 Downstream 82bp 24367 chr5 150051332 150051332 1 + G A SKCM 150051333 + 150051313 150051353 41 CCAGGTTGCCAATGCCAATGGCCCTGAGGGGCCGAACTACC CCAGGTTGCCAATGCCAATAGCCCTGAGGGGCCGAACTACC < 41bp 0.560584862492953 0.775666023695954 NA NA prediction 0.430162322406004 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051333 chr5:150051332 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_26778 0 0 0 0 1 MYOZ3 chr5:150051317 3'AG 150051317 Downstream 16bp 24368 chr12 50471087 50471087 1 + G T UCEC 50471088 + 50471068 50471108 41 AAGGGTGGGACGGGCAATGGGCTGGAAATCATGCTGGACAT AAGGGTGGGACGGGCAATGTGCTGGAAATCATGCTGGACAT < 41bp 0.695354338716616 0.910433143638071 NA NA prediction 0.43015760984291 Functional Gain - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50471088 chr12:50471087 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26779 0 0 0 0 2 ASIC1 chr12:50470996 3'AG 50470996 Downstream 92bp 24369 chr12 50471087 50471087 1 + G T UCEC 50471088 + 50471068 50471108 41 AAGGGTGGGACGGGCAATGGGCTGGAAATCATGCTGGACAT AAGGGTGGGACGGGCAATGTGCTGGAAATCATGCTGGACAT < 41bp 0.695354338716616 0.910433143638071 NA NA prediction 0.43015760984291 Functional Gain - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50471088 chr12:50471087 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26779 0 0 0 0 2 ASIC1 chr12:50471146 5'GT 50471146 Upstream 60bp 24370 chr18 20602158 20602158 1 + C T UCEC 20602159 + 20602139 20602179 41 CTGCTCAAGACACCGATTCCGCTACATTCCACCCAACACAC CTGCTCAAGACACCGATTCTGCTACATTCCACCCAACACAC < 41bp 0.501040634618652 0.716114485366471 NA NA prediction 0.430147701495638 Functional Gain - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20602159 chr18:20602158 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_26781 0 0 1 0 2 RBBP8 chr18:20602092 3'AG 20602092 Downstream 67bp 24371 chr18 20602158 20602158 1 + C T UCEC 20602159 + 20602139 20602179 41 CTGCTCAAGACACCGATTCCGCTACATTCCACCCAACACAC CTGCTCAAGACACCGATTCTGCTACATTCCACCCAACACAC < 41bp 0.501040634618652 0.716114485366471 NA NA prediction 0.430147701495638 Functional Gain - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20602159 chr18:20602158 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_26781 0 0 1 0 2 RBBP8 chr18:20602233 5'GT 20602233 Upstream 76bp 24372 chr7 36194773 36194773 1 + G T LUAD 36194774 + 36194754 36194794 41 AGAAGGCCAACAACCCCGGGGTGCGAGAGGTGGTGTGCATG AGAAGGCCAACAACCCCGGTGTGCGAGAGGTGGTGTGCATG < 41bp 0.36863382070567 0.715069155665035 NA NA prediction 0.43013831133007 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36194774 chr7:36194773 synonymous SNV . 0 20 hm7G_associated_SNPs_26782 0 0 1 0 1 EEPD1 chr7:36194811 5'GT 36194811 Upstream 39bp 24373 chr17 74944110 74944110 1 + G A UCEC 74944111 + 74944091 74944131 41 CGACACCTGCCTGGACCACGGGCTAATCTGTGAGCCCTCCT CGACACCTGCCTGGACCACAGGCTAATCTGTGAGCCCTCCT < 41bp 0.516189791130425 0.731257482096357 NA NA prediction 0.430135381931863 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74944111 chr17:74944110 nonsynonymous SNV 0.432 4 20 hm7G_associated_SNPs_26783 0 0 1 0 1 MGAT5B chr17:74944168 5'GT 74944168 Upstream 59bp 24374 chrX 129185990 129185990 1 + G T THCA 129185991 + 129185971 129186011 41 CCAAGTGTCAGTGTCCCGCGGGTAAGTGTCCGAGAGATCCA CCAAGTGTCAGTGTCCCGCTGGTAAGTGTCCGAGAGATCCA < 41bp 0.689395943532681 0.904461448831237 NA NA prediction 0.430131010597113 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129185991 chrX:129185990 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_26784 0 0 1 0 1 BCORL1 chrX:129185991 5'GT 129185991 Upstream 2bp 24375 chr3 190122607 190122607 1 + G T LUSC 190122608 + 190122588 190122628 41 AGATATTCTAGCTGGGTTTGGATTTCTCACCCTGCTCCTTG AGATATTCTAGCTGGGTTTTGATTTCTCACCCTGCTCCTTG < 41bp 0.382871311672375 0.715061746411361 NA NA prediction 0.430123492822721 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190122608 chr3:190122607 stopgain 0.993 1 20 hm7G_associated_SNPs_26785 0 0 0 0 1 CLDN16 chr3:190122551 3'AG 190122551 Downstream 57bp 24376 chr16 1392722 1392722 1 + G A SKCM 1392723 + 1392703 1392743 41 TGGGCTCTGCGTTGCAGAGGGATACGGCCATGAGCCAGCGC TGGGCTCTGCGTTGCAGAGAGATACGGCCATGAGCCAGCGC < 41bp 0.495823270505731 0.715058167007211 NA NA prediction 0.430116334014421 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392723 chr16:1392722 synonymous SNV . 0 20 hm7G_associated_SNPs_26788 0 0 0 0 2 BAIAP3 chr16:1392720 3'AG 1392720 Downstream 3bp 24377 chr16 1392722 1392722 1 + G A SKCM 1392723 + 1392703 1392743 41 TGGGCTCTGCGTTGCAGAGGGATACGGCCATGAGCCAGCGC TGGGCTCTGCGTTGCAGAGAGATACGGCCATGAGCCAGCGC < 41bp 0.495823270505731 0.715058167007211 NA NA prediction 0.430116334014421 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392723 chr16:1392722 synonymous SNV . 0 20 hm7G_associated_SNPs_26788 0 0 0 0 2 BAIAP3 chr16:1392815 5'GT 1392815 Upstream 94bp 24378 chr12 100811861 100811861 1 + G T COAD 100811862 + 100811842 100811882 41 TATGCCAGCATTCTCATGGGGATCTCAAACGGAGTGGGAAC TATGCCAGCATTCTCATGGTGATCTCAAACGGAGTGGGAAC < 41bp 0.680868106676346 0.895922378425905 NA NA prediction 0.430108543499117 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100811862 chr12:100811861 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26790 0 0 0 0 2 SLC17A8 chr12:100811807 3'AG 100811807 Downstream 55bp 24379 chr12 100811861 100811861 1 + G T COAD 100811862 + 100811842 100811882 41 TATGCCAGCATTCTCATGGGGATCTCAAACGGAGTGGGAAC TATGCCAGCATTCTCATGGTGATCTCAAACGGAGTGGGAAC < 41bp 0.680868106676346 0.895922378425905 NA NA prediction 0.430108543499117 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100811862 chr12:100811861 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26790 0 0 0 0 2 SLC17A8 chr12:100811934 5'GT 100811934 Upstream 74bp 24380 chr17 48618869 48618869 1 + G T LIHC 48618870 + 48618850 48618890 41 CCCCAGTTCCAAGCAAAATGGCACGAAGGAGCCAGATGCCC CCCCAGTTCCAAGCAAAATTGCACGAAGGAGCCAGATGCCC < 41bp 0.696478334258997 0.911532067918756 NA NA prediction 0.430107467319517 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48618870 chr17:48618869 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_26791 0 0 0 0 1 EPN3 chr17:48618825 3'AG 48618825 Downstream 45bp 24381 chr17 61559014 61559014 1 + G A SKCM 61559015 + 61558995 61559035 41 GCCTCCCGAGTTCTGGGAAGGGTCGATGCTGGAGAAGCCGG GCCTCCCGAGTTCTGGGAAAGGTCGATGCTGGAGAAGCCGG < 41bp 0.525363042981195 0.74041592829725 NA NA prediction 0.43010577063211 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61559015 chr17:61559014 nonsynonymous SNV 0.098 0 20 hm7G_associated_SNPs_26792 0 0 0 0 2 ACE chr17:61558927 3'AG 61558927 Downstream 88bp 24382 chr17 61559014 61559014 1 + G A SKCM 61559015 + 61558995 61559035 41 GCCTCCCGAGTTCTGGGAAGGGTCGATGCTGGAGAAGCCGG GCCTCCCGAGTTCTGGGAAAGGTCGATGCTGGAGAAGCCGG < 41bp 0.525363042981195 0.74041592829725 NA NA prediction 0.43010577063211 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61559015 chr17:61559014 nonsynonymous SNV 0.098 0 20 hm7G_associated_SNPs_26792 0 0 0 0 2 ACE chr17:61559099 5'GT 61559099 Upstream 86bp 24383 chr6 43222338 43222338 1 + G A SKCM 43222339 + 43222319 43222359 41 ACAGGAAGTGCTATATGCTGGACTTCGGGCTGGCCCGGCAG ACAGGAAGTGCTATATGCTAGACTTCGGGCTGGCCCGGCAG < 41bp 0.487966799524625 0.715047893521238 NA NA prediction 0.430095787042477 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222339 chr6:43222338 synonymous SNV . 0 20 hm7G_associated_SNPs_26793 0 0 0 0 2 TTBK1 chr6:43222285 3'AG 43222285 Downstream 54bp 24384 chr6 43222338 43222338 1 + G A SKCM 43222339 + 43222319 43222359 41 ACAGGAAGTGCTATATGCTGGACTTCGGGCTGGCCCGGCAG ACAGGAAGTGCTATATGCTAGACTTCGGGCTGGCCCGGCAG < 41bp 0.487966799524625 0.715047893521238 NA NA prediction 0.430095787042477 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222339 chr6:43222338 synonymous SNV . 0 20 hm7G_associated_SNPs_26793 0 0 0 0 2 TTBK1 chr6:43222389 5'GT 43222389 Upstream 52bp 24385 chr11 65620187 65620187 1 + G A SKCM 65620188 + 65620168 65620208 41 CGCGCACCAGGAACCGGGAGGTGCGGCCCGCCGAGAGCCAC CGCGCACCAGGAACCGGGAAGTGCGGCCCGCCGAGAGCCAC < 41bp 0.501643807269078 0.716691189866417 NA NA prediction 0.430094765194678 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65620188 chr11:65620187 synonymous SNV . 0 20 hm7G_associated_SNPs_26794 0 0 0 0 2 SNX32 chr11:65620101 3'AG 65620101 Downstream 87bp 24386 chr11 65620187 65620187 1 + G A SKCM 65620188 + 65620168 65620208 41 CGCGCACCAGGAACCGGGAGGTGCGGCCCGCCGAGAGCCAC CGCGCACCAGGAACCGGGAAGTGCGGCCCGCCGAGAGCCAC < 41bp 0.501643807269078 0.716691189866417 NA NA prediction 0.430094765194678 Functional Gain - SNX32 ENSG00000172803 CDS Human protein_coding chr11:65620188 chr11:65620187 synonymous SNV . 0 20 hm7G_associated_SNPs_26794 0 0 0 0 2 SNX32 chr11:65620260 5'GT 65620260 Upstream 74bp 24387 chr17 78058707 78058707 1 + C T UCEC 78058708 + 78058688 78058728 41 CCAGAGCGAGATCTCCCGGCGCACGATCCTGATCGAGAGGA CCAGAGCGAGATCTCCCGGTGCACGATCCTGATCGAGAGGA < 41bp 0.528383000811883 0.743423356173574 NA NA prediction 0.430080710723381 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78058708 chr17:78058707 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_26795 0 0 0 0 1 CCDC40 chr17:78058787 5'GT 78058787 Upstream 81bp 24388 chr19 7600768 7600768 1 + G A rs563334501 7600769 + 7600749 7600789 41 CGTCCTGGCGCCCGGGGAAGGCTCGGCGGGACGGATTTGCG CGTCCTGGCGCCCGGGGAAAGCTCGGCGGGACGGATTTGCG < 41bp 0.483775170801582 0.715028546689642 NA NA prediction 0.430057093379284 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7600769 chr19:7600768 nonsynonymous SNV 0.073 0 20 hm7G_associated_SNPs_26797 0 0 1 0 1 PNPLA6 chr19:7600675 3'AG 7600675 Downstream 94bp 24389 chr17 7909971 7909971 1 + G A SKCM 7909972 + 7909952 7909992 41 GGATGCACTTCCCGCGTGGGGGATCAGCACCCGGACCTGAC GGATGCACTTCCCGCGTGGAGGATCAGCACCCGGACCTGAC < 41bp 0.489757136064292 0.715027904715523 NA NA prediction 0.430055809431046 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7909972 chr17:7909971 synonymous SNV . 0 20 hm7G_associated_SNPs_26798 0 0 0 0 1 GUCY2D chr17:7910032 5'GT 7910032 Upstream 62bp 24390 chr10 99623759 99623759 1 + G A SKCM 99623760 + 99623740 99623780 41 AGAGGCTGAGAAGATTGGGGGCAGCTCCTACCTCGAGGGCT AGAGGCTGAGAAGATTGGGAGCAGCTCCTACCTCGAGGGCT < 41bp 0.498694644686904 0.71502699917841 NA NA prediction 0.43005399835682 Functional Gain - GOLGA7B ENSG00000155265 CDS Human protein_coding chr10:99623760 chr10:99623759 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26799 0 0 0 0 2 GOLGA7B chr10:99623687 3'AG 99623687 Downstream 73bp 24391 chr10 99623759 99623759 1 + G A SKCM 99623760 + 99623740 99623780 41 AGAGGCTGAGAAGATTGGGGGCAGCTCCTACCTCGAGGGCT AGAGGCTGAGAAGATTGGGAGCAGCTCCTACCTCGAGGGCT < 41bp 0.498694644686904 0.71502699917841 NA NA prediction 0.43005399835682 Functional Gain - GOLGA7B ENSG00000155265 CDS Human protein_coding chr10:99623760 chr10:99623759 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_26799 0 0 0 0 2 GOLGA7B chr10:99623839 5'GT 99623839 Upstream 81bp 24392 chr8 144463817 144463817 1 + G A UCEC 144463818 + 144463798 144463838 41 CCTGACCCGAGGAGAGGGCGGCTTTGGCCTCACGCTTCGGG CCTGACCCGAGGAGAGGGCAGCTTTGGCCTCACGCTTCGGG < 41bp 0.54199787184997 0.757014230671751 NA NA prediction 0.430032717643561 Functional Gain - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144463818 chr8:144463817 nonsynonymous SNV 0.074 1 20 hm7G_associated_SNPs_26800 0 0 0 0 2 RHPN1 chr8:144463742 3'AG 144463742 Downstream 76bp 24393 chr8 144463817 144463817 1 + G A UCEC 144463818 + 144463798 144463838 41 CCTGACCCGAGGAGAGGGCGGCTTTGGCCTCACGCTTCGGG CCTGACCCGAGGAGAGGGCAGCTTTGGCCTCACGCTTCGGG < 41bp 0.54199787184997 0.757014230671751 NA NA prediction 0.430032717643561 Functional Gain - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144463818 chr8:144463817 nonsynonymous SNV 0.074 1 20 hm7G_associated_SNPs_26800 0 0 0 0 2 RHPN1 chr8:144463888 5'GT 144463888 Upstream 72bp 24394 chr2 231865158 231865158 1 + G A rs370099747 231865159 + 231865139 231865179 41 CGCTTGCTGGCGTCGTCTGGGGCTATGCCATAGCCGCATCT CGCTTGCTGGCGTCGTCTGAGGCTATGCCATAGCCGCATCT < 41bp 0.502681306059874 0.717696698679248 NA NA prediction 0.430030785238748 Functional Gain - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231865159 chr2:231865158 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_26801 0 0 0 0 2 SPATA3 chr2:231865081 3'AG 231865081 Downstream 78bp 24395 chr2 231865158 231865158 1 + G A rs370099747 231865159 + 231865139 231865179 41 CGCTTGCTGGCGTCGTCTGGGGCTATGCCATAGCCGCATCT CGCTTGCTGGCGTCGTCTGAGGCTATGCCATAGCCGCATCT < 41bp 0.502681306059874 0.717696698679248 NA NA prediction 0.430030785238748 Functional Gain - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231865159 chr2:231865158 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_26801 0 0 0 0 2 SPATA3 chr2:231865252 5'GT 231865252 Upstream 95bp 24396 chr19 49878053 49878053 1 + G A rs111233735 49878054 + 49878034 49878074 41 CACACAGAACTCCATCCCCGGGTGGCCTTCTGGATCATTAA CACACAGAACTCCATCCCCAGGTGGCCTTCTGGATCATTAA < 41bp 0.535219328803545 0.750233476317406 NA NA prediction 0.430028295027722 Functional Gain - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49878054 chr19:49878053 nonsynonymous SNV 0.855 1 20 hm7G_associated_SNPs_26802 0 0 0 0 1 DKKL1 chr19:49877974 3'AG 49877974 Downstream 80bp 24397 chr11 61106798 61106798 1 + G A UVM 61106799 + 61106779 61106819 41 CTGGCCCGGGAGCAGGCCCGGGCTGAAGGCATCCCGGTGGA CTGGCCCGGGAGCAGGCCCAGGCTGAAGGCATCCCGGTGGA < 41bp 0.540738615059756 0.755746076002252 NA NA prediction 0.430014921884992 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61106799 chr11:61106798 nonsynonymous SNV 0.571 0 20 hm7G_associated_SNPs_26803 0 0 1 0 1 TKFC chr11:61106726 3'AG 61106726 Downstream 73bp 24398 chr21 42617934 42617934 1 + C T COAD 42617935 + 42617915 42617955 41 CAGTGGCACCACGCTGCTGCGCCTGCCCCAGAAGGTGTTTG CAGTGGCACCACGCTGCTGTGCCTGCCCCAGAAGGTGTTTG < 41bp 0.521120463869119 0.736118781821966 NA NA prediction 0.429996635905695 Functional Gain - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42617935 chr21:42617934 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26807 0 0 1 0 1 BACE2 chr21:42617990 5'GT 42617990 Upstream 57bp 24399 chr3 38318533 38318533 1 + G A GBM 38318534 + 38318514 38318554 41 CAGCCTCCCCATCGTGGCCGGCCTGCTGTGCACCCTGCTGC CAGCCTCCCCATCGTGGCCAGCCTGCTGTGCACCCTGCTGC < 41bp 0.491436143399087 0.714995840135345 NA NA prediction 0.42999168027069 Functional Gain - SLC22A13 ENSG00000172940 CDS Human protein_coding chr3:38318534 chr3:38318533 nonsynonymous SNV 0.023 2 20 hm7G_associated_SNPs_26808 0 0 0 0 1 SLC22A13 chr3:38318618 5'GT 38318618 Upstream 86bp 24400 chr21 46897667 46897667 1 + G A rs76547444 46897668 + 46897648 46897688 41 TTCTGTTTATTCCCAGGGCGGCCTGAAGGGGCAGAAAGGGG TTCTGTTTATTCCCAGGGCAGCCTGAAGGGGCAGAAAGGGG < 41bp 0.517710718877782 0.732705538967796 NA NA prediction 0.429989640180027 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46897668 chr21:46897667 nonsynonymous SNV 0.034 1 20 hm7G_associated_SNPs_26809 2 0 1 0 1 COL18A1 chr21:46897664 3'AG 46897664 Downstream 4bp 24401 chr15 91486250 91486250 1 + C T rs79604948 91486251 + 91486231 91486271 41 CTGACCCTCCTGATTAAAGCGGTGCCCCGGAAGTCTCTCAA CTGACCCTCCTGATTAAAGTGGTGCCCCGGAAGTCTCTCAA < 41bp 0.498036223464287 0.714992142860866 NA NA prediction 0.429984285721732 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91486251 chr15:91486250 nonsynonymous SNV 0.561 0 20 hm7G_associated_SNPs_26810 0 0 1 0 1 UNC45A chr15:91486312 5'GT 91486312 Upstream 63bp 24402 chr16 89598891 89598891 1 + C T COAD 89598892 + 89598872 89598912 41 CCTCGGCGCTGCCCGTGTGCGGAGCCTCTTTAAGGAAGCCC CCTCGGCGCTGCCCGTGTGTGGAGCCTCTTTAAGGAAGCCC < 41bp 0.511212758848674 0.726203365386938 NA NA prediction 0.429981213076528 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89598892 chr16:89598891 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_26811 1 0 1 0 1 SPG7 chr16:89598871 3'AG 89598871 Downstream 21bp 24403 chr13 113748872 113748872 1 + G A rs12429945 113748873 + 113748853 113748893 41 GGAGGCACCTGAGGACGACGGGGGCTGGTCAAGTGCAGAGG GGAGGCACCTGAGGACGACAGGGGCTGGTCAAGTGCAGAGG < 41bp 0.506952692657118 0.721939500293219 NA NA prediction 0.429973615272202 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113748873 chr13:113748872 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_26812 0 0 1 0 2 MCF2L chr13:113748828 3'AG 113748828 Downstream 45bp 24404 chr13 113748872 113748872 1 + G A rs12429945 113748873 + 113748853 113748893 41 GGAGGCACCTGAGGACGACGGGGGCTGGTCAAGTGCAGAGG GGAGGCACCTGAGGACGACAGGGGCTGGTCAAGTGCAGAGG < 41bp 0.506952692657118 0.721939500293219 NA NA prediction 0.429973615272202 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113748873 chr13:113748872 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_26812 0 0 1 0 2 MCF2L chr13:113748949 5'GT 113748949 Upstream 78bp 24405 chr2 69046325 69046325 1 + G T UCEC 69046326 + 69046306 69046346 41 TCCTCTTCCCCAAGTCCAAGGATATACCCCTGTCACCCCCT TCCTCTTCCCCAAGTCCAATGATATACCCCTGTCACCCCCT < 41bp 0.354726378832218 0.714983713760544 NA NA prediction 0.429967427521089 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69046326 chr2:69046325 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_26814 0 0 0 0 1 ARHGAP25 chr2:69046255 3'AG 69046255 Downstream 71bp 24406 chr19 6828465 6828465 1 + G A CESC 6828466 + 6828446 6828486 41 CGCAGGAGGCGATGGAGAAGGAGAACCTGCGGCTGGCCCTG CGCAGGAGGCGATGGAGAAAGAGAACCTGCGGCTGGCCCTG < 41bp 0.515920979081536 0.730895686920199 NA NA prediction 0.429949415677326 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828466 chr19:6828465 synonymous SNV . 0 20 hm7G_associated_SNPs_26815 0 0 1 0 1 VAV1 chr19:6828430 3'AG 6828430 Downstream 36bp 24407 chr2 27315296 27315296 1 + G A rs142663158 27315297 + 27315277 27315317 41 GTGCCTTCATGGGCTCAATGGCTCCTGGCCATGTTGCTGAG GTGCCTTCATGGGCTCAATAGCTCCTGGCCATGTTGCTGAG < 41bp 0.51825088106621 0.733216888962448 NA NA prediction 0.429932015792475 Functional Gain - KHK ENSG00000138030 CDS Human protein_coding chr2:27315297 chr2:27315296 nonsynonymous SNV 0.836 2 20 hm7G_associated_SNPs_26818 0 0 0 0 2 KHK chr2:27315200 3'AG 27315200 Downstream 97bp 24408 chr2 27315296 27315296 1 + G A rs142663158 27315297 + 27315277 27315317 41 GTGCCTTCATGGGCTCAATGGCTCCTGGCCATGTTGCTGAG GTGCCTTCATGGGCTCAATAGCTCCTGGCCATGTTGCTGAG < 41bp 0.51825088106621 0.733216888962448 NA NA prediction 0.429932015792475 Functional Gain - KHK ENSG00000138030 CDS Human protein_coding chr2:27315297 chr2:27315296 nonsynonymous SNV 0.836 2 20 hm7G_associated_SNPs_26818 0 0 0 0 2 KHK chr2:27315316 5'GT 27315316 Upstream 21bp 24409 chr11 122678800 122678800 1 + C T COAD 122678801 + 122678781 122678821 41 ACATCCTGATTGTGGCCCACGCATCTTCCCTTGAAGCGTGT ACATCCTGATTGTGGCCCATGCATCTTCCCTTGAAGCGTGT < 41bp 0.499641315601245 0.71495666533313 NA NA prediction 0.429913330666259 Functional Gain - UBASH3B ENSG00000154127 CDS Human protein_coding chr11:122678801 chr11:122678800 synonymous SNV . 0 20 hm7G_associated_SNPs_26822 0 0 0 0 2 UBASH3B chr11:122678775 3'AG 122678775 Downstream 26bp 24410 chr11 122678800 122678800 1 + C T COAD 122678801 + 122678781 122678821 41 ACATCCTGATTGTGGCCCACGCATCTTCCCTTGAAGCGTGT ACATCCTGATTGTGGCCCATGCATCTTCCCTTGAAGCGTGT < 41bp 0.499641315601245 0.71495666533313 NA NA prediction 0.429913330666259 Functional Gain - UBASH3B ENSG00000154127 CDS Human protein_coding chr11:122678801 chr11:122678800 synonymous SNV . 0 20 hm7G_associated_SNPs_26822 0 0 0 0 2 UBASH3B chr11:122678884 5'GT 122678884 Upstream 85bp 24411 chr3 179426668 179426668 1 + G T LUAD 179426669 + 179426649 179426689 41 GACAGCTCTGGGGGCAACGGGCATGCGCTGGAGCATTACAG GACAGCTCTGGGGGCAACGTGCATGCGCTGGAGCATTACAG < 41bp 0.368253399244391 0.714955740057587 NA NA prediction 0.429911480115175 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179426669 chr3:179426668 nonsynonymous SNV 0.474 4 20 hm7G_associated_SNPs_26823 0 0 1 0 1 USP13 chr3:179426745 5'GT 179426745 Upstream 78bp 24412 chr16 23388539 23388539 1 + G T LUSC 23388540 + 23388520 23388560 41 GCAGAGAGAGACCTGCATTGGCATGTGCAAGGAGTCCTGCA GCAGAGAGAGACCTGCATTTGCATGTGCAAGGAGTCCTGCA < 41bp 0.691282520565403 0.906236411600935 NA NA prediction 0.429907782071065 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23388540 chr16:23388539 nonsynonymous SNV 0.307 1 20 hm7G_associated_SNPs_26825 0 0 0 0 2 SCNN1B chr16:23388486 3'AG 23388486 Downstream 54bp 24413 chr16 23388539 23388539 1 + G T LUSC 23388540 + 23388520 23388560 41 GCAGAGAGAGACCTGCATTGGCATGTGCAAGGAGTCCTGCA GCAGAGAGAGACCTGCATTTGCATGTGCAAGGAGTCCTGCA < 41bp 0.691282520565403 0.906236411600935 NA NA prediction 0.429907782071065 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23388540 chr16:23388539 nonsynonymous SNV 0.307 1 20 hm7G_associated_SNPs_26825 0 0 0 0 2 SCNN1B chr16:23388561 5'GT 23388561 Upstream 23bp 24414 chr3 52550112 52550112 1 + G T UCEC 52550113 + 52550093 52550133 41 TGTGTGAGCCATGCCCAGGGGGTCTAGGGGGGGTGTGCTCA TGTGTGAGCCATGCCCAGGTGGTCTAGGGGGGGTGTGCTCA < 41bp 0.689699136253727 0.904649975604046 NA NA prediction 0.429901678700639 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52550113 chr3:52550112 synonymous SNV . 0 20 hm7G_associated_SNPs_26826 0 0 0 0 1 STAB1 chr3:52550059 3'AG 52550059 Downstream 54bp 24415 chr12 133195507 133195507 1 + G A HNSC 133195508 + 133195488 133195528 41 AGACGCCCAAGGTGATCGTGGTGAGGAACCGGCGCCTGGGG AGACGCCCAAGGTGATCGTAGTGAGGAACCGGCGCCTGGGG < 41bp 0.491693844159758 0.714948518757909 NA NA prediction 0.429897037515818 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133195508 chr12:133195507 synonymous SNV . 0 20 hm7G_associated_SNPs_26827 0 0 0 0 2 P2RX2 chr12:133195507 5'GT 133195507 Upstream 1bp 24416 chr12 133195507 133195507 1 + G A HNSC 133195508 + 133195488 133195528 41 AGACGCCCAAGGTGATCGTGGTGAGGAACCGGCGCCTGGGG AGACGCCCAAGGTGATCGTAGTGAGGAACCGGCGCCTGGGG < 41bp 0.491693844159758 0.714948518757909 NA NA prediction 0.429897037515818 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133195508 chr12:133195507 synonymous SNV . 0 20 hm7G_associated_SNPs_26827 0 0 0 0 2 P2RX2 chr12:133195575 5'GT 133195575 Upstream 69bp 24417 chr21 43979143 43979143 1 + G A UCEC 43979144 + 43979124 43979164 41 CCACGTCGTCATTCTCCCCGGGGACGGTGGGAGTGGCACGG CCACGTCGTCATTCTCCCCAGGGACGGTGGGAGTGGCACGG < 41bp 0.558690915758819 0.773638931875508 NA NA prediction 0.429896032233378 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979144 chr21:43979143 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_26828 0 0 1 0 2 SLC37A1 chr21:43979068 3'AG 43979068 Downstream 76bp 24418 chr21 43979143 43979143 1 + G A UCEC 43979144 + 43979124 43979164 41 CCACGTCGTCATTCTCCCCGGGGACGGTGGGAGTGGCACGG CCACGTCGTCATTCTCCCCAGGGACGGTGGGAGTGGCACGG < 41bp 0.558690915758819 0.773638931875508 NA NA prediction 0.429896032233378 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43979144 chr21:43979143 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_26828 0 0 1 0 2 SLC37A1 chr21:43979199 5'GT 43979199 Upstream 57bp 24419 chr19 58991385 58991385 1 + G A rs372496370 58991386 + 58991366 58991406 41 TCTGCAGAAGCCTGCGCTCGGGTGAGTGCCCCACACCATCC TCTGCAGAAGCCTGCGCTCAGGTGAGTGCCCCACACCATCC < 41bp 0.497938487274702 0.714946845811894 NA NA prediction 0.429893691623788 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991386 chr19:58991385 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_26829 0 0 0 0 2 ZNF446 chr19:58991297 3'AG 58991297 Downstream 89bp 24420 chr19 58991385 58991385 1 + G A rs372496370 58991386 + 58991366 58991406 41 TCTGCAGAAGCCTGCGCTCGGGTGAGTGCCCCACACCATCC TCTGCAGAAGCCTGCGCTCAGGTGAGTGCCCCACACCATCC < 41bp 0.497938487274702 0.714946845811894 NA NA prediction 0.429893691623788 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991386 chr19:58991385 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_26829 0 0 0 0 2 ZNF446 chr19:58991386 5'GT 58991386 Upstream 2bp 24421 chr2 219562655 219562655 1 + G T OV 219562656 + 219562636 219562676 41 TCCCCTTTGCGCTGGACATGGATGCTGACCTCCTTATAGGT TCCCCTTTGCGCTGGACATTGATGCTGACCTCCTTATAGGT < 41bp 0.363386065507599 0.714934649023141 NA NA prediction 0.429869298046282 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219562656 chr2:219562655 nonsynonymous SNV 0.890 0 20 hm7G_associated_SNPs_26834 0 0 1 0 3 STK36 chr2:219562577 3'AG 219562577 Downstream 79bp 24422 chr2 219562655 219562655 1 + G T OV 219562656 + 219562636 219562676 41 TCCCCTTTGCGCTGGACATGGATGCTGACCTCCTTATAGGT TCCCCTTTGCGCTGGACATTGATGCTGACCTCCTTATAGGT < 41bp 0.363386065507599 0.714934649023141 NA NA prediction 0.429869298046282 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219562656 chr2:219562655 nonsynonymous SNV 0.890 0 20 hm7G_associated_SNPs_26834 0 0 1 0 3 STK36 chr2:219562626 3'AG 219562626 Downstream 30bp 24423 chr2 219562655 219562655 1 + G T OV 219562656 + 219562636 219562676 41 TCCCCTTTGCGCTGGACATGGATGCTGACCTCCTTATAGGT TCCCCTTTGCGCTGGACATTGATGCTGACCTCCTTATAGGT < 41bp 0.363386065507599 0.714934649023141 NA NA prediction 0.429869298046282 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219562656 chr2:219562655 nonsynonymous SNV 0.890 0 20 hm7G_associated_SNPs_26834 0 0 1 0 3 STK36 chr2:219562724 5'GT 219562724 Upstream 70bp 24424 chr7 2644557 2644557 1 + C T COAD 2644558 + 2644538 2644578 41 TTTCAGGGGACATCTCACGCGGACAAAGCTCTTAGCAAGCA TTTCAGGGGACATCTCACGTGGACAAAGCTCTTAGCAAGCA < 41bp 0.511241447866479 0.726166096961354 NA NA prediction 0.42984929818975 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2644558 chr7:2644557 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_26836 0 0 0 0 2 IQCE chr7:2644515 3'AG 2644515 Downstream 43bp 24425 chr7 2644557 2644557 1 + C T COAD 2644558 + 2644538 2644578 41 TTTCAGGGGACATCTCACGCGGACAAAGCTCTTAGCAAGCA TTTCAGGGGACATCTCACGTGGACAAAGCTCTTAGCAAGCA < 41bp 0.511241447866479 0.726166096961354 NA NA prediction 0.42984929818975 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2644558 chr7:2644557 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_26836 0 0 0 0 2 IQCE chr7:2644625 5'GT 2644625 Upstream 69bp 24426 chr3 10105580 10105580 1 + G T LUAD 10105581 + 10105561 10105601 41 TGATCCAACATGAAAAGCTGGATCCAAAAGCCCTGGTAAAG TGATCCAACATGAAAAGCTTGATCCAAAAGCCCTGGTAAAG < 41bp 0.383475134048853 0.714918273178498 NA NA prediction 0.429836546356995 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10105581 chr3:10105580 synonymous SNV . 0 20 hm7G_associated_SNPs_26838 0 0 1 0 1 FANCD2 chr3:10105595 5'GT 10105595 Upstream 16bp 24427 chr1 46874210 46874210 1 + G A LUAD 46874211 + 46874191 46874231 41 CCCTCCCCGGCCATGAGGCGGGCCGTGCTGGAGACCAAACA CCCTCCCCGGCCATGAGGCAGGCCGTGCTGGAGACCAAACA < 41bp 0.525630978940417 0.740544520875327 NA NA prediction 0.429827083869818 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46874211 chr1:46874210 nonsynonymous SNV 0.514 4 20 hm7G_associated_SNPs_26840 0 0 0 0 2 FAAH chr1:46874131 3'AG 46874131 Downstream 80bp 24428 chr1 46874210 46874210 1 + G A LUAD 46874211 + 46874191 46874231 41 CCCTCCCCGGCCATGAGGCGGGCCGTGCTGGAGACCAAACA CCCTCCCCGGCCATGAGGCAGGCCGTGCTGGAGACCAAACA < 41bp 0.525630978940417 0.740544520875327 NA NA prediction 0.429827083869818 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46874211 chr1:46874210 nonsynonymous SNV 0.514 4 20 hm7G_associated_SNPs_26840 0 0 0 0 2 FAAH chr1:46874256 5'GT 46874256 Upstream 47bp 24429 chr10 122280570 122280570 1 + C T UCEC 122280571 + 122280551 122280591 41 GTGACCCCGATCTGGTGTCCGAGGGCCGCAAAAGCTTCCCC GTGACCCCGATCTGGTGTCTGAGGGCCGCAAAAGCTTCCCC < 41bp 0.499376052699586 0.714908359542972 NA NA prediction 0.429816719085945 Functional Gain - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122280571 chr10:122280570 synonymous SNV . 0 20 hm7G_associated_SNPs_26841 0 0 0 0 3 PLPP4 chr10:122280483 3'AG 122280483 Downstream 88bp 24430 chr10 122280570 122280570 1 + C T UCEC 122280571 + 122280551 122280591 41 GTGACCCCGATCTGGTGTCCGAGGGCCGCAAAAGCTTCCCC GTGACCCCGATCTGGTGTCTGAGGGCCGCAAAAGCTTCCCC < 41bp 0.499376052699586 0.714908359542972 NA NA prediction 0.429816719085945 Functional Gain - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122280571 chr10:122280570 synonymous SNV . 0 20 hm7G_associated_SNPs_26841 0 0 0 0 3 PLPP4 chr10:122280518 3'AG 122280518 Downstream 53bp 24431 chr10 122280570 122280570 1 + C T UCEC 122280571 + 122280551 122280591 41 GTGACCCCGATCTGGTGTCCGAGGGCCGCAAAAGCTTCCCC GTGACCCCGATCTGGTGTCTGAGGGCCGCAAAAGCTTCCCC < 41bp 0.499376052699586 0.714908359542972 NA NA prediction 0.429816719085945 Functional Gain - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122280571 chr10:122280570 synonymous SNV . 0 20 hm7G_associated_SNPs_26841 0 0 0 0 3 PLPP4 chr10:122280607 5'GT 122280607 Upstream 38bp 24432 chr3 151461888 151461888 1 + G T SARC 151461889 + 151461869 151461909 41 TCTTCATTTCAGAACAGAGGGCTTTTGACTTCCTGAATAGA TCTTCATTTCAGAACAGAGTGCTTTTGACTTCCTGAATAGA < 41bp 0.398245465273343 0.714907893753991 NA NA prediction 0.429815787507982 Functional Gain - AADACL2 ENSG00000197953 CDS Human protein_coding chr3:151461889 chr3:151461888 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_26842 0 0 0 0 2 AADACL2 chr3:151461881 3'AG 151461881 Downstream 8bp 24433 chr3 151461888 151461888 1 + G T SARC 151461889 + 151461869 151461909 41 TCTTCATTTCAGAACAGAGGGCTTTTGACTTCCTGAATAGA TCTTCATTTCAGAACAGAGTGCTTTTGACTTCCTGAATAGA < 41bp 0.398245465273343 0.714907893753991 NA NA prediction 0.429815787507982 Functional Gain - AADACL2 ENSG00000197953 CDS Human protein_coding chr3:151461889 chr3:151461888 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_26842 0 0 0 0 2 AADACL2 chr3:151461950 5'GT 151461950 Upstream 63bp 24434 chr19 16799044 16799044 1 + G T LUSC 16799045 + 16799025 16799065 41 TGTTTGGTTCGGCCTGCGGGGGTGACCATCACCACGACAAC TGTTTGGTTCGGCCTGCGGTGGTGACCATCACCACGACAAC < 41bp 0.68803590700258 0.902941561055886 NA NA prediction 0.429811308106612 Functional Gain - TMEM38A ENSG00000072954 CDS Human protein_coding chr19:16799045 chr19:16799044 synonymous SNV . 0 20 hm7G_associated_SNPs_26843 0 0 0 0 1 TMEM38A chr19:16798955 3'AG 16798955 Downstream 90bp 24435 chr11 551954 551954 1 + G A SKCM 551955 + 551935 551975 41 AAGGGCCTGCGGGAGCGTAGGCACCAGTGCCAGGTACAGCC AAGGGCCTGCGGGAGCGTAAGCACCAGTGCCAGGTACAGCC < 41bp 0.541693465491014 0.756597568193125 NA NA prediction 0.429808205404223 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551955 chr11:551954 nonsynonymous SNV 0.729 0 20 hm7G_associated_SNPs_26844 0 0 0 0 2 LRRC56 chr11:551903 3'AG 551903 Downstream 52bp 24436 chr11 551954 551954 1 + G A SKCM 551955 + 551935 551975 41 AAGGGCCTGCGGGAGCGTAGGCACCAGTGCCAGGTACAGCC AAGGGCCTGCGGGAGCGTAAGCACCAGTGCCAGGTACAGCC < 41bp 0.541693465491014 0.756597568193125 NA NA prediction 0.429808205404223 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:551955 chr11:551954 nonsynonymous SNV 0.729 0 20 hm7G_associated_SNPs_26844 0 0 0 0 2 LRRC56 chr11:551967 5'GT 551967 Upstream 14bp 24437 chr16 70508746 70508746 1 + G A SKCM 70508747 + 70508727 70508767 41 GCTTGGCGGGGCTGTGCTGGGCCTGGCTGTGCGAGTGGACG GCTTGGCGGGGCTGTGCTGAGCCTGGCTGTGCGAGTGGACG < 41bp 0.553656708847142 0.768552740025519 NA NA prediction 0.429792062356755 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70508747 chr16:70508746 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_26846 0 0 1 0 1 FUK chr16:70508693 3'AG 70508693 Downstream 54bp 24438 chr12 56118161 56118161 1 + G T STAD 56118162 + 56118142 56118182 41 GTGACCCGGACCTAACCAAGGTGAGCCGATGCCTGGAGCAT GTGACCCGGACCTAACCAATGTGAGCCGATGCCTGGAGCAT < 41bp 0.389953061490962 0.714894781895394 NA NA prediction 0.429789563790788 Functional Gain - RDH5 ENSG00000135437 CDS Human protein_coding chr12:56118162 chr12:56118161 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_26847 0 0 1 0 1 RDH5 chr12:56118106 3'AG 56118106 Downstream 56bp 24439 chr19 7711209 7711209 1 + G A rs137978942 7711210 + 7711190 7711230 41 AGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATGGAG AGCTGTCCCGCTGGACCCCAGTCATCAAGGATGTAATGGAG < 41bp 0.505337924668744 0.720229090862029 NA NA prediction 0.429782332386569 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711210 chr19:7711209 synonymous SNV . 0 20 hm7G_associated_SNPs_26848 0 0 1 2 2 STXBP2 chr19:7711135 3'AG 7711135 Downstream 75bp 24440 chr19 7711209 7711209 1 + G A rs137978942 7711210 + 7711190 7711230 41 AGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATGGAG AGCTGTCCCGCTGGACCCCAGTCATCAAGGATGTAATGGAG < 41bp 0.505337924668744 0.720229090862029 NA NA prediction 0.429782332386569 Functional Gain - STXBP2 ENSG00000076944 CDS Human protein_coding chr19:7711210 chr19:7711209 synonymous SNV . 0 20 hm7G_associated_SNPs_26848 0 0 1 2 2 STXBP2 chr19:7711230 5'GT 7711230 Upstream 22bp 24441 chr7 105615328 105615328 1 + G T UCEC 105615329 + 105615309 105615349 41 AATCCTCTTACCTGCTACAGGCAATGTGGCAGAGAATTCTC AATCCTCTTACCTGCTACATGCAATGTGGCAGAGAATTCTC < 41bp 0.371780532534869 0.714871486622236 NA NA prediction 0.429742973244471 Functional Gain - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105615329 chr7:105615328 nonsynonymous SNV 0.388 0 20 hm7G_associated_SNPs_26852 0 0 0 0 1 CDHR3 chr7:105615290 3'AG 105615290 Downstream 39bp 24442 chr1 236907995 236907995 1 + G T LUAD 236907996 + 236907976 236908016 41 GAGGTGCGGGCTCTGCTGCGGAAGCACGAGGCGTTCGAGAG GAGGTGCGGGCTCTGCTGCTGAAGCACGAGGCGTTCGAGAG < 41bp 0.692144863798623 0.907016019290429 NA NA prediction 0.429742310983613 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236907996 chr1:236907995 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_26853 0 0 0 0 2 ACTN2 chr1:236907926 3'AG 236907926 Downstream 70bp 24443 chr1 236907995 236907995 1 + G T LUAD 236907996 + 236907976 236908016 41 GAGGTGCGGGCTCTGCTGCGGAAGCACGAGGCGTTCGAGAG GAGGTGCGGGCTCTGCTGCTGAAGCACGAGGCGTTCGAGAG < 41bp 0.692144863798623 0.907016019290429 NA NA prediction 0.429742310983613 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236907996 chr1:236907995 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_26853 0 0 0 0 2 ACTN2 chr1:236908076 5'GT 236908076 Upstream 82bp 24444 chr10 88419115 88419115 1 + G A rs371665178 88419116 + 88419096 88419136 41 ACTACATGAGCTTCACGCCGGCCGTGCGTGCCTACACCATG ACTACATGAGCTTCACGCCAGCCGTGCGTGCCTACACCATG < 41bp 0.490143766732231 0.714868251772056 NA NA prediction 0.429736503544113 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88419116 chr10:88419115 synonymous SNV . 0 20 hm7G_associated_SNPs_26855 0 0 0 0 1 OPN4 chr10:88419054 3'AG 88419054 Downstream 62bp 24445 chr11 61487634 61487634 1 + G A COAD 61487635 + 61487615 61487655 41 AGAGCCACCAGCCATGCCCGGGATCGTGGTGTTCCGGCGGC AGAGCCACCAGCCATGCCCAGGATCGTGGTGTTCCGGCGGC < 41bp 0.544461271451056 0.759322186706624 NA NA prediction 0.429721830511135 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61487635 chr11:61487634 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_26856 0 0 1 0 2 DAGLA chr11:61487584 3'AG 61487584 Downstream 51bp 24446 chr11 61487634 61487634 1 + G A COAD 61487635 + 61487615 61487655 41 AGAGCCACCAGCCATGCCCGGGATCGTGGTGTTCCGGCGGC AGAGCCACCAGCCATGCCCAGGATCGTGGTGTTCCGGCGGC < 41bp 0.544461271451056 0.759322186706624 NA NA prediction 0.429721830511135 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61487635 chr11:61487634 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_26856 0 0 1 0 2 DAGLA chr11:61487722 5'GT 61487722 Upstream 89bp 24447 chr7 150731374 150731374 1 + G A SKCM 150731375 + 150731355 150731395 41 TCCAGCTGGCCTTGGGTGCGGCACTCGTGAATGTACAGATC TCCAGCTGGCCTTGGGTGCAGCACTCGTGAATGTACAGATC < 41bp 0.52795726285226 0.742815335220304 NA NA prediction 0.429716144736088 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150731375 chr7:150731374 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26857 0 0 1 0 1 ABCB8 chr7:150731360 3'AG 150731360 Downstream 15bp 24448 chr7 128445926 128445926 1 + C T OV 128445927 + 128445907 128445947 41 TGCTCAGAATGAGGTGCTTCGGTTTCAGACCTCCCACAGTG TGCTCAGAATGAGGTGCTTTGGTTTCAGACCTCCCACAGTG < 41bp 0.499200338791976 0.714849367827082 NA NA prediction 0.429698735654163 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445927 chr7:128445926 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_26859 0 0 1 0 1 CCDC136 chr7:128445955 5'GT 128445955 Upstream 30bp 24449 chr11 721599 721599 1 + G A SKCM 721600 + 721580 721620 41 GCCCTGGACGACATCGAGTGGTTTGTGGCCCGGCTGCAGAA GCCCTGGACGACATCGAGTAGTTTGTGGCCCGGCTGCAGAA < 41bp 0.511701509297516 0.726539431827738 NA NA prediction 0.429675845060444 Functional Gain - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:721600 chr11:721599 stopgain 0.760 0 20 hm7G_associated_SNPs_26861 0 0 1 0 2 EPS8L2 chr11:721565 3'AG 721565 Downstream 35bp 24450 chr11 721599 721599 1 + G A SKCM 721600 + 721580 721620 41 GCCCTGGACGACATCGAGTGGTTTGTGGCCCGGCTGCAGAA GCCCTGGACGACATCGAGTAGTTTGTGGCCCGGCTGCAGAA < 41bp 0.511701509297516 0.726539431827738 NA NA prediction 0.429675845060444 Functional Gain - EPS8L2 ENSG00000177106 CDS Human protein_coding chr11:721600 chr11:721599 stopgain 0.760 0 20 hm7G_associated_SNPs_26861 0 0 1 0 2 EPS8L2 chr11:721691 5'GT 721691 Upstream 93bp 24451 chr11 45946093 45946093 1 + G A UCEC 45946094 + 45946074 45946114 41 CCCCAACAAGCACTACTCCGGCCTCTATGGGCTAATGAAGC CCCCAACAAGCACTACTCCAGCCTCTATGGGCTAATGAAGC < 41bp 0.532225090373782 0.747062700973246 NA NA prediction 0.429675221198929 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45946094 chr11:45946093 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26862 0 0 0 0 1 LARGE2 chr11:45946057 3'AG 45946057 Downstream 37bp 24452 chr9 72741297 72741297 1 + C T COAD 72741298 + 72741278 72741318 41 AATGCTGCCTGGAACCTTGCGGAGGTCGAGTTCAGTGCTCC AATGCTGCCTGGAACCTTGTGGAGGTCGAGTTCAGTGCTCC < 41bp 0.500926827067489 0.715764113495356 NA NA prediction 0.429674572855735 Functional Gain - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72741298 chr9:72741297 nonsynonymous SNV 0.306 0 20 hm7G_associated_SNPs_26864 0 0 0 0 1 MAMDC2 chr9:72741331 5'GT 72741331 Upstream 35bp 24453 chr3 197707307 197707307 1 + C T LGG 197707308 + 197707288 197707328 41 ACGTTGGTGCTCTGGCCACCGAGAGATGCAGCCATGAAAAC ACGTTGGTGCTCTGGCCACTGAGAGATGCAGCCATGAAAAC < 41bp 0.510994195977815 0.72582714925158 NA NA prediction 0.42966590654753 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197707308 chr3:197707307 synonymous SNV . 0 20 hm7G_associated_SNPs_26866 0 0 0 0 1 LMLN chr3:197707375 5'GT 197707375 Upstream 69bp 24454 chr1 11589919 11589919 1 + G A LUSC 11589920 + 11589900 11589940 41 TGCGGGAAGCCGGCGGTGCGGCCACTAGTGGATACCGGGGC TGCGGGAAGCCGGCGGTGCAGCCACTAGTGGATACCGGGGC < 41bp 0.503656385536893 0.718487293114526 NA NA prediction 0.429661815155266 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589920 chr1:11589919 nonsynonymous SNV 0.433 5 20 hm7G_associated_SNPs_26867 0 0 0 0 2 DISP3 chr1:11589844 3'AG 11589844 Downstream 76bp 24455 chr1 11589919 11589919 1 + G A LUSC 11589920 + 11589900 11589940 41 TGCGGGAAGCCGGCGGTGCGGCCACTAGTGGATACCGGGGC TGCGGGAAGCCGGCGGTGCAGCCACTAGTGGATACCGGGGC < 41bp 0.503656385536893 0.718487293114526 NA NA prediction 0.429661815155266 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589920 chr1:11589919 nonsynonymous SNV 0.433 5 20 hm7G_associated_SNPs_26867 0 0 0 0 2 DISP3 chr1:11590016 5'GT 11590016 Upstream 98bp 24456 chr2 73449901 73449901 1 + C T LUSC 73449902 + 73449882 73449922 41 GGGCCAACTGGAACTTCTGCGGAGACTCTTCACAGAGGCCC GGGCCAACTGGAACTTCTGTGGAGACTCTTCACAGAGGCCC < 41bp 0.505610236696608 0.72044015725337 NA NA prediction 0.429659841113526 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73449902 chr2:73449901 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_26868 0 0 0 0 2 SMYD5 chr2:73449883 3'AG 73449883 Downstream 19bp 24457 chr2 73449901 73449901 1 + C T LUSC 73449902 + 73449882 73449922 41 GGGCCAACTGGAACTTCTGCGGAGACTCTTCACAGAGGCCC GGGCCAACTGGAACTTCTGTGGAGACTCTTCACAGAGGCCC < 41bp 0.505610236696608 0.72044015725337 NA NA prediction 0.429659841113526 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73449902 chr2:73449901 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_26868 0 0 0 0 2 SMYD5 chr2:73449945 5'GT 73449945 Upstream 45bp 24458 chr14 77294730 77294730 1 + G A LUSC 77294731 + 77294711 77294751 41 GAAAAAGTGAAACCAGCCCGGGAGAATTCGGAAACAGACCT GAAAAAGTGAAACCAGCCCAGGAGAATTCGGAAACAGACCT < 41bp 0.503374951112763 0.718202210317055 NA NA prediction 0.429654518408583 Functional Gain - LRRC74A ENSG00000100565 CDS Human protein_coding chr14:77294731 chr14:77294730 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_26869 0 0 0 0 1 LRRC74A chr14:77294634 3'AG 77294634 Downstream 97bp 24459 chr11 120983846 120983846 1 + C T GBM 120983847 + 120983827 120983867 41 TCACCCTCTTCAATTATTACGAAATCAACTGGACCACGGGG TCACCCTCTTCAATTATTATGAAATCAACTGGACCACGGGG < 41bp 0.503586802538932 0.718410209839415 NA NA prediction 0.429646814600968 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120983847 chr11:120983846 synonymous SNV . 0 20 hm7G_associated_SNPs_26870 0 0 0 0 2 TECTA chr11:120983781 3'AG 120983781 Downstream 66bp 24460 chr11 120983846 120983846 1 + C T GBM 120983847 + 120983827 120983867 41 TCACCCTCTTCAATTATTACGAAATCAACTGGACCACGGGG TCACCCTCTTCAATTATTATGAAATCAACTGGACCACGGGG < 41bp 0.503586802538932 0.718410209839415 NA NA prediction 0.429646814600968 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120983847 chr11:120983846 synonymous SNV . 0 20 hm7G_associated_SNPs_26870 0 0 0 0 2 TECTA chr11:120983918 5'GT 120983918 Upstream 73bp 24461 chr11 48158615 48158615 1 + G T LUSC 48158616 + 48158596 48158636 41 ACAGCAGCAACTTTAAGTTGGCAGAACTTTGATGACGCCTC ACAGCAGCAACTTTAAGTTTGCAGAACTTTGATGACGCCTC < 41bp 0.366167837738634 0.714820311594884 NA NA prediction 0.429640623189768 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48158616 chr11:48158615 nonsynonymous SNV 0.086 4 20 hm7G_associated_SNPs_26872 0 0 1 0 1 PTPRJ chr11:48158555 3'AG 48158555 Downstream 61bp 24462 chr19 51919293 51919293 1 + G A SKCM 51919294 + 51919274 51919314 41 CAGGGATGGGACGAGGAGAGGACTCTGTTCTGCAGGACCCA CAGGGATGGGACGAGGAGAAGACTCTGTTCTGCAGGACCCA < 41bp 0.52947241508668 0.744287427273221 NA NA prediction 0.429630024373081 Functional Gain - LOC100129083;SIGLEC10 ENSG00000142512 CDS Human protein_coding chr19:51919294 chr19:51919293 nonsynonymous SNV 0.321 3 20 hm7G_associated_SNPs_26874 0 0 0 0 1 LOC100129083;SIGLEC10 chr19:51919386 5'GT 51919386 Upstream 94bp 24463 chr13 49771056 49771056 1 + G T LUAD 49771057 + 49771037 49771077 41 GATATTACTACAGCCCCTGGGCCACCAGATCAGTGCAAGCC GATATTACTACAGCCCCTGTGCCACCAGATCAGTGCAAGCC < 41bp 0.372206218992765 0.714804441994454 NA NA prediction 0.429608883988909 Functional Gain - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771057 chr13:49771056 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26877 0 0 0 0 2 FNDC3A chr13:49771013 3'AG 49771013 Downstream 44bp 24464 chr13 49771056 49771056 1 + G T LUAD 49771057 + 49771037 49771077 41 GATATTACTACAGCCCCTGGGCCACCAGATCAGTGCAAGCC GATATTACTACAGCCCCTGTGCCACCAGATCAGTGCAAGCC < 41bp 0.372206218992765 0.714804441994454 NA NA prediction 0.429608883988909 Functional Gain - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49771057 chr13:49771056 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26877 0 0 0 0 2 FNDC3A chr13:49771126 5'GT 49771126 Upstream 71bp 24465 chr16 3163444 3163444 1 + G A LAML 3163445 + 3163425 3163465 41 ATAGAAAATGTCTGCAGACGGCGGAGGCATCCAGGACACCC ATAGAAAATGTCTGCAGACAGCGGAGGCATCCAGGACACCC < 41bp 0.502208571857115 0.717005127232502 NA NA prediction 0.429593110750773 Functional Gain - ZNF205 ENSG00000122386 CDS Human other chr16:3163445 chr16:3163444 nonsynonymous SNV 0.102 0 20 hm7G_associated_SNPs_26880 0 0 0 0 3 ZNF205-AS1 chr16:3163350 3'AG 3163350 Downstream 95bp 24466 chr16 3163444 3163444 1 + G A LAML 3163445 + 3163425 3163465 41 ATAGAAAATGTCTGCAGACGGCGGAGGCATCCAGGACACCC ATAGAAAATGTCTGCAGACAGCGGAGGCATCCAGGACACCC < 41bp 0.502208571857115 0.717005127232502 NA NA prediction 0.429593110750773 Functional Gain - ZNF205 ENSG00000122386 CDS Human other chr16:3163445 chr16:3163444 nonsynonymous SNV 0.102 0 20 hm7G_associated_SNPs_26880 0 0 0 0 3 ZNF205-AS1 chr16:3163418 3'AG 3163418 Downstream 27bp 24467 chr16 3163444 3163444 1 + G A LAML 3163445 + 3163425 3163465 41 ATAGAAAATGTCTGCAGACGGCGGAGGCATCCAGGACACCC ATAGAAAATGTCTGCAGACAGCGGAGGCATCCAGGACACCC < 41bp 0.502208571857115 0.717005127232502 NA NA prediction 0.429593110750773 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3163445 chr16:3163444 nonsynonymous SNV 0.102 0 20 hm7G_associated_SNPs_26880 0 0 0 0 3 ZNF205 chr16:3163488 5'GT 3163488 Upstream 45bp 24468 chr17 45376723 45376723 1 + C T UCEC 45376724 + 45376704 45376744 41 TGTGTGACTCCGACTGGACCGGCTACTACTGCAACTGTACC TGTGTGACTCCGACTGGACTGGCTACTACTGCAACTGTACC < 41bp 0.51434944784845 0.729145009680197 NA NA prediction 0.429591123663494 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376724 chr17:45376723 synonymous SNV . 0 20 hm7G_associated_SNPs_26881 0 0 0 0 1 ITGB3 chr17:45376674 3'AG 45376674 Downstream 50bp 24469 chr11 64120561 64120561 1 + G A UCEC 64120562 + 64120542 64120582 41 GCAGAGTTGTCTCGGGAGCGGGGTGAGCTGCAGGGTGAACG GCAGAGTTGTCTCGGGAGCAGGGTGAGCTGCAGGGTGAACG < 41bp 0.505589346121105 0.720380600804843 NA NA prediction 0.429582509367476 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64120562 chr11:64120561 nonsynonymous SNV 0.963 2 20 hm7G_associated_SNPs_26882 0 0 1 0 1 CCDC88B chr11:64120526 3'AG 64120526 Downstream 36bp 24470 chr8 19679960 19679960 1 + G T SARC 19679961 + 19679941 19679981 41 TTGAAATAGGTTGGCCTTGGGGAGGCACTATTAGAGGCTGA TTGAAATAGGTTGGCCTTGTGGAGGCACTATTAGAGGCTGA < 41bp 0.681101726507547 0.895890070757781 NA NA prediction 0.429576688500469 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19679961 chr8:19679960 nonsynonymous SNV 0.853 3 20 hm7G_associated_SNPs_26884 0 0 1 0 2 INTS10 chr8:19679950 3'AG 19679950 Downstream 11bp 24471 chr8 19679960 19679960 1 + G T SARC 19679961 + 19679941 19679981 41 TTGAAATAGGTTGGCCTTGGGGAGGCACTATTAGAGGCTGA TTGAAATAGGTTGGCCTTGTGGAGGCACTATTAGAGGCTGA < 41bp 0.681101726507547 0.895890070757781 NA NA prediction 0.429576688500469 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19679961 chr8:19679960 nonsynonymous SNV 0.853 3 20 hm7G_associated_SNPs_26884 0 0 1 0 2 INTS10 chr8:19680031 5'GT 19680031 Upstream 72bp 24472 chr1 22919856 22919856 1 + G A HNSC 22919857 + 22919837 22919877 41 TGATCCGTCAAGAGCGGGCGGGGCAGACCAGCGTCTCGCTG TGATCCGTCAAGAGCGGGCAGGGCAGACCAGCGTCTCGCTG < 41bp 0.530315368622144 0.745101077571851 NA NA prediction 0.429571417899412 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22919857 chr1:22919856 synonymous SNV . 0 20 hm7G_associated_SNPs_26885 0 0 0 0 2 EPHA8 chr1:22919819 3'AG 22919819 Downstream 38bp 24473 chr1 22919856 22919856 1 + G A HNSC 22919857 + 22919837 22919877 41 TGATCCGTCAAGAGCGGGCGGGGCAGACCAGCGTCTCGCTG TGATCCGTCAAGAGCGGGCAGGGCAGACCAGCGTCTCGCTG < 41bp 0.530315368622144 0.745101077571851 NA NA prediction 0.429571417899412 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22919857 chr1:22919856 synonymous SNV . 0 20 hm7G_associated_SNPs_26885 0 0 0 0 2 EPHA8 chr1:22919943 5'GT 22919943 Upstream 88bp 24474 chr8 144804001 144804001 1 + G A rs576245505 144804002 + 144803982 144804022 41 GCCAACCAGGCCCTGATCCGGGGTGACTGGAACCGGGGCGG GCCAACCAGGCCCTGATCCAGGGTGACTGGAACCGGGGCGG < 41bp 0.485767207687927 0.7147852942717 NA NA prediction 0.4295705885434 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144804002 chr8:144804001 nonsynonymous SNV 0.488 3 20 hm7G_associated_SNPs_26886 0 0 0 0 2 MAPK15 chr8:144803922 3'AG 144803922 Downstream 80bp 24475 chr8 144804001 144804001 1 + G A rs576245505 144804002 + 144803982 144804022 41 GCCAACCAGGCCCTGATCCGGGGTGACTGGAACCGGGGCGG GCCAACCAGGCCCTGATCCAGGGTGACTGGAACCGGGGCGG < 41bp 0.485767207687927 0.7147852942717 NA NA prediction 0.4295705885434 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144804002 chr8:144804001 nonsynonymous SNV 0.488 3 20 hm7G_associated_SNPs_26886 0 0 0 0 2 MAPK15 chr8:144804050 5'GT 144804050 Upstream 50bp 24476 chr9 95766401 95766401 1 + C T PRAD 95766402 + 95766382 95766422 41 CTGCTGCCGGAGCTGAAGACGCGGATCACGGAGGAGTGGTG CTGCTGCCGGAGCTGAAGATGCGGATCACGGAGGAGTGGTG < 41bp 0.496656455731001 0.714782138732725 NA NA prediction 0.42956427746545 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95766402 chr9:95766401 nonsynonymous SNV 0.906 3 20 hm7G_associated_SNPs_26887 0 0 0 0 1 FGD3 chr9:95766419 5'GT 95766419 Upstream 19bp 24477 chr18 77624193 77624193 1 + G A SKCM 77624194 + 77624174 77624214 41 CCCGCACTCGGGGCTGGCGGGCAAGCTCTTCGCCTGCGTGT CCCGCACTCGGGGCTGGCGAGCAAGCTCTTCGCCTGCGTGT < 41bp 0.549643306574632 0.764409983803251 NA NA prediction 0.429533354457238 Functional Gain - KCNG2 ENSG00000178342 CDS Human protein_coding chr18:77624194 chr18:77624193 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_26890 0 0 0 0 1 KCNG2 chr18:77624291 5'GT 77624291 Upstream 99bp 24478 chr19 7523465 7523465 1 + C T UCEC 7523466 + 7523446 7523486 41 GTGGCCAACGAGGAGAAAGCGATGTTTCTGATCAGCGCCTC GTGGCCAACGAGGAGAAAGTGATGTTTCTGATCAGCGCCTC < 41bp 0.508987678755148 0.7237511568334 NA NA prediction 0.429526956156502 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7523466 chr19:7523465 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_26893 0 0 1 0 1 ARHGEF18 chr19:7523398 3'AG 7523398 Downstream 68bp 24479 chr12 3127715 3127715 1 + G A LUAD 3127716 + 3127696 3127736 41 CTTTTGCCTCCTCAGTTTTGGCAAGGAGCTTTGCCAGGCCA CTTTTGCCTCCTCAGTTTTAGCAAGGAGCTTTGCCAGGCCA < 41bp 0.516476313597645 0.731238463718313 NA NA prediction 0.429524300241336 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3127716 chr12:3127715 stopgain 1.000 1 20 hm7G_associated_SNPs_26894 0 0 1 0 2 TEAD4 chr12:3127711 3'AG 3127711 Downstream 5bp 24480 chr12 3127715 3127715 1 + G A LUAD 3127716 + 3127696 3127736 41 CTTTTGCCTCCTCAGTTTTGGCAAGGAGCTTTGCCAGGCCA CTTTTGCCTCCTCAGTTTTAGCAAGGAGCTTTGCCAGGCCA < 41bp 0.516476313597645 0.731238463718313 NA NA prediction 0.429524300241336 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3127716 chr12:3127715 stopgain 1.000 1 20 hm7G_associated_SNPs_26894 0 0 1 0 2 TEAD4 chr12:3127754 5'GT 3127754 Upstream 40bp 24481 chr20 61451327 61451327 1 + G A SKCM 61451328 + 61451308 61451348 41 GGACCCAAGGGTGCCCCTGGGGAACGGGTAAGTGCCTGCGC GGACCCAAGGGTGCCCCTGAGGAACGGGTAAGTGCCTGCGC < 41bp 0.488963216492551 0.714761054151896 NA NA prediction 0.429522108303791 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61451328 chr20:61451327 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_26895 0 0 1 0 1 COL9A3 chr20:61451334 5'GT 61451334 Upstream 8bp 24482 chr7 5112573 5112573 1 + G A COAD 5112574 + 5112554 5112594 41 AGTCGGGGCTGGCGGAGACGGAGAGCTGCGGGCAGACTCAC AGTCGGGGCTGGCGGAGACAGAGAGCTGCGGGCAGACTCAC < 41bp 0.497293575795031 0.714759928961294 NA NA prediction 0.429519857922588 Functional Gain - RBAKDN ENSG00000272968 CDS Human protein_coding chr7:5112574 chr7:5112573 synonymous SNV . 0 20 hm7G_associated_SNPs_26896 0 0 0 0 1 RBAKDN chr7:5112553 3'AG 5112553 Downstream 21bp 24483 chr12 133197926 133197926 1 + G T LUAD 133197927 + 133197907 133197947 41 CATTGACGTCATTGTGCATGGACAGGTGCCTGCACCTGCTG CATTGACGTCATTGTGCATTGACAGGTGCCTGCACCTGCTG < 41bp 0.368630668656082 0.714758344680027 NA NA prediction 0.429516689360053 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197927 chr12:133197926 stopgain 0.953 1 20 hm7G_associated_SNPs_26897 0 0 0 0 3 P2RX2 chr12:133197841 3'AG 133197841 Downstream 86bp 24484 chr12 133197926 133197926 1 + G T LUAD 133197927 + 133197907 133197947 41 CATTGACGTCATTGTGCATGGACAGGTGCCTGCACCTGCTG CATTGACGTCATTGTGCATTGACAGGTGCCTGCACCTGCTG < 41bp 0.368630668656082 0.714758344680027 NA NA prediction 0.429516689360053 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197927 chr12:133197926 stopgain 0.953 1 20 hm7G_associated_SNPs_26897 0 0 0 0 3 P2RX2 chr12:133197931 5'GT 133197931 Upstream 6bp 24485 chr12 133197926 133197926 1 + G T LUAD 133197927 + 133197907 133197947 41 CATTGACGTCATTGTGCATGGACAGGTGCCTGCACCTGCTG CATTGACGTCATTGTGCATTGACAGGTGCCTGCACCTGCTG < 41bp 0.368630668656082 0.714758344680027 NA NA prediction 0.429516689360053 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197927 chr12:133197926 stopgain 0.953 1 20 hm7G_associated_SNPs_26897 0 0 0 0 3 P2RX2 chr12:133197950 5'GT 133197950 Upstream 25bp 24486 chr12 6562260 6562260 1 + G A rs146769470 6562261 + 6562241 6562281 41 CCAGCAGAGGGGCAGTGGCGGGCAGTGGACGTGGTCCTAGA CCAGCAGAGGGGCAGTGGCAGGCAGTGGACGTGGTCCTAGA < 41bp 0.548618893262519 0.763371860923272 NA NA prediction 0.429505935321505 Functional Gain - TAPBPL ENSG00000139192 CDS Human protein_coding chr12:6562261 chr12:6562260 nonsynonymous SNV 0.015 0 20 hm7G_associated_SNPs_26898 0 0 0 0 1 TAPBPL chr12:6562233 3'AG 6562233 Downstream 28bp 24487 chr21 47417371 47417371 1 + G A LGG 47417372 + 47417352 47417392 41 CGGACCTAAAGGCTACCGAGGCGATGAGGGTCCCCCAGGGT CGGACCTAAAGGCTACCGAAGCGATGAGGGTCCCCCAGGGT < 41bp 0.48464927611426 0.71475155262643 NA NA prediction 0.429503105252859 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47417372 chr21:47417371 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_26899 0 0 0 0 2 COL6A1 chr21:47417335 3'AG 47417335 Downstream 37bp 24488 chr21 47417371 47417371 1 + G A LGG 47417372 + 47417352 47417392 41 CGGACCTAAAGGCTACCGAGGCGATGAGGGTCCCCCAGGGT CGGACCTAAAGGCTACCGAAGCGATGAGGGTCCCCCAGGGT < 41bp 0.48464927611426 0.71475155262643 NA NA prediction 0.429503105252859 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47417372 chr21:47417371 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_26899 0 0 0 0 2 COL6A1 chr21:47417397 5'GT 47417397 Upstream 27bp 24489 chr1 24979441 24979441 1 + C T CESC 24979442 + 24979422 24979462 41 GCGGCCAAGCCCAAGAAGGCGGCCATCTCCTCGAAGAAGAA GCGGCCAAGCCCAAGAAGGTGGCCATCTCCTCGAAGAAGAA < 41bp 0.521332720009181 0.736080940719549 NA NA prediction 0.429496441420737 Functional Gain - SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24979442 chr1:24979441 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_26900 0 0 1 0 2 SRRM1 chr1:24979404 3'AG 24979404 Downstream 38bp 24490 chr1 24979441 24979441 1 + C T CESC 24979442 + 24979422 24979462 41 GCGGCCAAGCCCAAGAAGGCGGCCATCTCCTCGAAGAAGAA GCGGCCAAGCCCAAGAAGGTGGCCATCTCCTCGAAGAAGAA < 41bp 0.521332720009181 0.736080940719549 NA NA prediction 0.429496441420737 Functional Gain - SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24979442 chr1:24979441 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_26900 0 0 1 0 2 SRRM1 chr1:24979523 5'GT 24979523 Upstream 83bp 24491 chr11 130058498 130058498 1 + C T rs62642512 130058499 + 130058479 130058519 41 AGAATTTTGTGGATGCCTACGAGAACTCCAACTCCACTGAG AGAATTTTGTGGATGCCTATGAGAACTCCAACTCCACTGAG < 41bp 0.501551641896825 0.716297486276091 NA NA prediction 0.429491688758532 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130058499 chr11:130058498 synonymous SNV . 0 20 hm7G_associated_SNPs_26902 0 0 0 0 2 ST14 chr11:130058425 3'AG 130058425 Downstream 74bp 24492 chr11 130058498 130058498 1 + C T rs62642512 130058499 + 130058479 130058519 41 AGAATTTTGTGGATGCCTACGAGAACTCCAACTCCACTGAG AGAATTTTGTGGATGCCTATGAGAACTCCAACTCCACTGAG < 41bp 0.501551641896825 0.716297486276091 NA NA prediction 0.429491688758532 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130058499 chr11:130058498 synonymous SNV . 0 20 hm7G_associated_SNPs_26902 0 0 0 0 2 ST14 chr11:130058552 5'GT 130058552 Upstream 55bp 24493 chr1 19018322 19018322 1 + C T SKCM 19018323 + 19018303 19018343 41 GCGCAAGCAGCGACGCAGTCGGACCACATTCACGGCCGAGC GCGCAAGCAGCGACGCAGTTGGACCACATTCACGGCCGAGC < 41bp 0.505675894844192 0.720419615173315 NA NA prediction 0.429487440658246 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19018323 chr1:19018322 nonsynonymous SNV 0.578 2 20 hm7G_associated_SNPs_26903 0 0 0 0 1 PAX7 chr1:19018248 3'AG 19018248 Downstream 75bp 24494 chr17 8160200 8160200 1 + C T UCEC 8160201 + 8160181 8160221 41 TGGCACAGGGGGCCGGATTCGAGATGTCCAGTGCACAGGCC TGGCACAGGGGGCCGGATTTGAGATGTCCAGTGCACAGGCC < 41bp 0.496269858327408 0.714739090444808 NA NA prediction 0.429478180889616 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8160201 chr17:8160200 stopgain 0.994 1 20 hm7G_associated_SNPs_26904 0 0 1 0 2 PFAS chr17:8160153 3'AG 8160153 Downstream 48bp 24495 chr17 8160200 8160200 1 + C T UCEC 8160201 + 8160181 8160221 41 TGGCACAGGGGGCCGGATTCGAGATGTCCAGTGCACAGGCC TGGCACAGGGGGCCGGATTTGAGATGTCCAGTGCACAGGCC < 41bp 0.496269858327408 0.714739090444808 NA NA prediction 0.429478180889616 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8160201 chr17:8160200 stopgain 0.994 1 20 hm7G_associated_SNPs_26904 0 0 1 0 2 PFAS chr17:8160281 5'GT 8160281 Upstream 82bp 24496 chr10 121203198 121203198 1 + G A SKCM 121203199 + 121203179 121203219 41 GGGAGGAGGTGGACCGCCGGGTCCTGGAGACGGAGGAGGTG GGGAGGAGGTGGACCGCCGAGTCCTGGAGACGGAGGAGGTG < 41bp 0.503753105434094 0.718491571050531 NA NA prediction 0.429476931232875 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121203199 chr10:121203198 synonymous SNV . 0 20 hm7G_associated_SNPs_26906 0 0 1 0 1 GRK5 chr10:121203264 5'GT 121203264 Upstream 67bp 24497 chr2 74076531 74076531 1 + C T UCEC 74076532 + 74076512 74076552 41 CCATGTGGTGGTGCCTGGGCGGCTGTGCCCACAGTTTCTCC CCATGTGGTGGTGCCTGGGTGGCTGTGCCCACAGTTTCTCC < 41bp 0.503813049944654 0.718548991148177 NA NA prediction 0.429471882407047 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076532 chr2:74076531 nonsynonymous SNV 0.027 1 20 hm7G_associated_SNPs_26908 0 0 1 0 2 STAMBP chr2:74076490 3'AG 74076490 Downstream 42bp 24498 chr2 74076531 74076531 1 + C T UCEC 74076532 + 74076512 74076552 41 CCATGTGGTGGTGCCTGGGCGGCTGTGCCCACAGTTTCTCC CCATGTGGTGGTGCCTGGGTGGCTGTGCCCACAGTTTCTCC < 41bp 0.503813049944654 0.718548991148177 NA NA prediction 0.429471882407047 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076532 chr2:74076531 nonsynonymous SNV 0.027 1 20 hm7G_associated_SNPs_26908 0 0 1 0 2 STAMBP chr2:74076614 5'GT 74076614 Upstream 84bp 24499 chr19 14805892 14805892 1 + G T UCEC 14805893 + 14805873 14805913 41 TTGCTGGACAGCGCACGGAGGAGCCTGTGCAAATACAGGAT TTGCTGGACAGCGCACGGATGAGCCTGTGCAAATACAGGAT < 41bp 0.379160107826602 0.714733393303373 NA NA prediction 0.429466786606746 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14805893 chr19:14805892 nonsynonymous SNV 0.036 3 20 hm7G_associated_SNPs_26910 0 0 0 0 2 ZNF333 chr19:14805822 3'AG 14805822 Downstream 71bp 24500 chr19 14805892 14805892 1 + G T UCEC 14805893 + 14805873 14805913 41 TTGCTGGACAGCGCACGGAGGAGCCTGTGCAAATACAGGAT TTGCTGGACAGCGCACGGATGAGCCTGTGCAAATACAGGAT < 41bp 0.379160107826602 0.714733393303373 NA NA prediction 0.429466786606746 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14805893 chr19:14805892 nonsynonymous SNV 0.036 3 20 hm7G_associated_SNPs_26910 0 0 0 0 2 ZNF333 chr19:14805945 5'GT 14805945 Upstream 54bp 24501 chr12 57861181 57861181 1 + G A UCEC 57861182 + 57861162 57861202 41 CGCACCTGCGGTCACACACGGGTGAGAAGCCATACATGTGT CGCACCTGCGGTCACACACAGGTGAGAAGCCATACATGTGT < 41bp 0.505657576950235 0.720385951841987 NA NA prediction 0.429456749783504 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57861182 chr12:57861181 synonymous SNV . 0 20 hm7G_associated_SNPs_26911 0 0 1 0 2 GLI1 chr12:57861116 3'AG 57861116 Downstream 66bp 24502 chr12 57861181 57861181 1 + G A UCEC 57861182 + 57861162 57861202 41 CGCACCTGCGGTCACACACGGGTGAGAAGCCATACATGTGT CGCACCTGCGGTCACACACAGGTGAGAAGCCATACATGTGT < 41bp 0.505657576950235 0.720385951841987 NA NA prediction 0.429456749783504 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57861182 chr12:57861181 synonymous SNV . 0 20 hm7G_associated_SNPs_26911 0 0 1 0 2 GLI1 chr12:57861280 5'GT 57861280 Upstream 100bp 24503 chr16 28892329 28892329 1 + G A SKCM 28892330 + 28892310 28892350 41 CATTGCCAATGCCATCGTGGGGGTTTGGCAGGTTAGCGTTG CATTGCCAATGCCATCGTGAGGGTTTGGCAGGTTAGCGTTG < 41bp 0.50577958822701 0.720506197304211 NA NA prediction 0.429453218154402 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28892330 chr16:28892329 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_26913 0 0 1 0 2 ATP2A1 chr16:28892236 3'AG 28892236 Downstream 94bp 24504 chr16 28892329 28892329 1 + G A SKCM 28892330 + 28892310 28892350 41 CATTGCCAATGCCATCGTGGGGGTTTGGCAGGTTAGCGTTG CATTGCCAATGCCATCGTGAGGGTTTGGCAGGTTAGCGTTG < 41bp 0.50577958822701 0.720506197304211 NA NA prediction 0.429453218154402 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28892330 chr16:28892329 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_26913 0 0 1 0 2 ATP2A1 chr16:28892340 5'GT 28892340 Upstream 12bp 24505 chr6 43220495 43220495 1 + G A HNSC 43220496 + 43220476 43220516 41 GCTGAAAAAGATCGGGGGCGGGGGCTTTGGTGAGATCTACG GCTGAAAAAGATCGGGGGCAGGGGCTTTGGTGAGATCTACG < 41bp 0.516483065888678 0.731207930023368 NA NA prediction 0.429449728269381 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43220496 chr6:43220495 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_26914 0 0 0 0 1 TTBK1 chr6:43220477 3'AG 43220477 Downstream 19bp 24506 chr7 75028289 75028289 1 + G A SKCM 75028290 + 75028270 75028310 41 TCTGCCTGGAGGTCTTCAAGGAGTCCCTAATGCTACAGTGC TCTGCCTGGAGGTCTTCAAAGAGTCCCTAATGCTACAGTGC < 41bp 0.503501388832054 0.718225731610837 NA NA prediction 0.429448685557567 Functional Gain - TRIM73 ENSG00000178809 CDS Human protein_coding chr7:75028290 chr7:75028289 synonymous SNV . 0 20 hm7G_associated_SNPs_26915 0 0 1 0 1 TRIM73 chr7:75028200 3'AG 75028200 Downstream 90bp 24507 chr22 24581170 24581170 1 + G A SARC 24581171 + 24581151 24581191 41 CTCAGTGCCAGGCCTGGGAGGAGCTGGAGGATCAGCTGCCC CTCAGTGCCAGGCCTGGGAAGAGCTGGAGGATCAGCTGCCC < 41bp 0.530316999749628 0.745028129940859 NA NA prediction 0.429422260382463 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24581171 chr22:24581170 synonymous SNV . 0 20 hm7G_associated_SNPs_26917 0 0 1 0 1 SUSD2 chr22:24581263 5'GT 24581263 Upstream 94bp 24508 chr11 22363281 22363281 1 + G T COAD 22363282 + 22363262 22363302 41 GCGTGGCCATTGTGGACATGGTCAACAACAGCACCATCCAC GCGTGGCCATTGTGGACATTGTCAACAACAGCACCATCCAC < 41bp 0.38051304426814 0.714710903549022 NA NA prediction 0.429421807098044 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363282 chr11:22363281 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26918 0 0 0 0 1 SLC17A6 chr11:22363326 5'GT 22363326 Upstream 46bp 24509 chr7 106513286 106513286 1 + C T GBM 106513287 + 106513267 106513307 41 GTGGCACAGCCATGCTGCACGACTTTACCCAACAAGTCCAA GTGGCACAGCCATGCTGCATGACTTTACCCAACAAGTCCAA < 41bp 0.500531117379214 0.715228493968888 NA NA prediction 0.429394753179348 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106513287 chr7:106513286 synonymous SNV . 0 20 hm7G_associated_SNPs_26922 0 0 0 0 1 PIK3CG chr7:106513383 5'GT 106513383 Upstream 98bp 24510 chr3 51979643 51979643 1 + G T UCEC 51979644 + 51979624 51979664 41 GCTGCAGCTGCTAGACTCTGGAGCACCTGAGTACAAGGTGA GCTGCAGCTGCTAGACTCTTGAGCACCTGAGTACAAGGTGA < 41bp 0.365793543276102 0.714695033684515 NA NA prediction 0.42939006736903 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979644 chr3:51979643 stopgain 0.123 0 20 hm7G_associated_SNPs_26925 0 0 0 0 1 PARP3 chr3:51979660 5'GT 51979660 Upstream 18bp 24511 chr11 61111695 61111695 1 + G A COAD 61111696 + 61111676 61111716 41 CACCTGAATGCCCTGGACCGGGCTGCTGGTGACGGCGACTG CACCTGAATGCCCTGGACCAGGCTGCTGGTGACGGCGACTG < 41bp 0.523647142688653 0.738338722488771 NA NA prediction 0.429383159600237 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61111696 chr11:61111695 nonsynonymous SNV 0.915 3 20 hm7G_associated_SNPs_26927 0 0 1 0 2 TKFC chr11:61111608 3'AG 61111608 Downstream 88bp 24512 chr11 61111695 61111695 1 + G A COAD 61111696 + 61111676 61111716 41 CACCTGAATGCCCTGGACCGGGCTGCTGGTGACGGCGACTG CACCTGAATGCCCTGGACCAGGCTGCTGGTGACGGCGACTG < 41bp 0.523647142688653 0.738338722488771 NA NA prediction 0.429383159600237 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61111696 chr11:61111695 nonsynonymous SNV 0.915 3 20 hm7G_associated_SNPs_26927 0 0 1 0 2 TKFC chr11:61111745 5'GT 61111745 Upstream 51bp 24513 chr19 35802851 35802851 1 + G A rs148183570 35802852 + 35802832 35802872 41 CAGAGAGCCCCAGCTTCTCGGCAGGGGACAACCCTCCCGTC CAGAGAGCCCCAGCTTCTCAGCAGGGGACAACCCTCCCGTC < 41bp 0.536426398169557 0.75111632437603 NA NA prediction 0.429379852412946 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35802852 chr19:35802851 synonymous SNV . 0 20 hm7G_associated_SNPs_26928 0 0 0 0 2 MAG chr19:35802821 3'AG 35802821 Downstream 31bp 24514 chr19 35802851 35802851 1 + G A rs148183570 35802852 + 35802832 35802872 41 CAGAGAGCCCCAGCTTCTCGGCAGGGGACAACCCTCCCGTC CAGAGAGCCCCAGCTTCTCAGCAGGGGACAACCCTCCCGTC < 41bp 0.536426398169557 0.75111632437603 NA NA prediction 0.429379852412946 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35802852 chr19:35802851 synonymous SNV . 0 20 hm7G_associated_SNPs_26928 0 0 0 0 2 MAG chr19:35802920 5'GT 35802920 Upstream 70bp 24515 chr17 18874357 18874357 1 + G A SKCM 18874358 + 18874338 18874378 41 TCGGTGGTTACGGGCAGCTGGAGGCAGCCTACGCCCAGGCC TCGGTGGTTACGGGCAGCTAGAGGCAGCCTACGCCCAGGCC < 41bp 0.512171923561065 0.726856066971837 NA NA prediction 0.429368286821545 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18874358 chr17:18874357 synonymous SNV . 0 20 hm7G_associated_SNPs_26930 0 0 0 0 1 SLC5A10 chr17:18874326 3'AG 18874326 Downstream 32bp 24516 chr5 128844886 128844886 1 + G T UCEC 128844887 + 128844867 128844907 41 AAAGGTCCATGGAGGAAAAGGTCACAGAGAAGTCAGCTCTT AAAGGTCCATGGAGGAAAATGTCACAGAGAAGTCAGCTCTT < 41bp 0.378714109378816 0.714673355203144 NA NA prediction 0.429346710406287 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:128844887 chr5:128844886 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_26934 0 0 0 0 1 ADAMTS19 chr5:128844935 5'GT 128844935 Upstream 50bp 24517 chr15 91422703 91422703 1 + G A BRCA 91422704 + 91422684 91422724 41 ACTTGCGGCAGAAGTGCACGGAGTCTCACACGGGCACCTCA ACTTGCGGCAGAAGTGCACAGAGTCTCACACGGGCACCTCA < 41bp 0.509205529241357 0.723868394267847 NA NA prediction 0.429325730052981 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91422704 chr15:91422703 synonymous SNV . 0 20 hm7G_associated_SNPs_26937 0 0 1 0 2 FURIN chr15:91422674 3'AG 91422674 Downstream 30bp 24518 chr15 91422703 91422703 1 + G A BRCA 91422704 + 91422684 91422724 41 ACTTGCGGCAGAAGTGCACGGAGTCTCACACGGGCACCTCA ACTTGCGGCAGAAGTGCACAGAGTCTCACACGGGCACCTCA < 41bp 0.509205529241357 0.723868394267847 NA NA prediction 0.429325730052981 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91422704 chr15:91422703 synonymous SNV . 0 20 hm7G_associated_SNPs_26937 0 0 1 0 2 FURIN chr15:91422774 5'GT 91422774 Upstream 72bp 24519 chrX 101817539 101817539 1 + G T LUSC 101817540 + 101817520 101817560 41 CACCATTAGATTCCTTATGGGATAAAGTATGATAAGAGTTG CACCATTAGATTCCTTATGTGATAAAGTATGATAAGAGTTG < 41bp 0.394642131528351 0.714662314724027 NA NA prediction 0.429324629448053 Functional Gain - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101817540 chrX:101817539 . . 0 20 hm7G_associated_SNPs_26938 0 0 0 0 2 NXF4 chrX:101817529 3'AG 101817529 Downstream 11bp 24520 chrX 101817539 101817539 1 + G T LUSC 101817540 + 101817520 101817560 41 CACCATTAGATTCCTTATGGGATAAAGTATGATAAGAGTTG CACCATTAGATTCCTTATGTGATAAAGTATGATAAGAGTTG < 41bp 0.394642131528351 0.714662314724027 NA NA prediction 0.429324629448053 Functional Gain - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101817540 chrX:101817539 . . 0 20 hm7G_associated_SNPs_26938 0 0 0 0 2 NXF4 chrX:101817612 5'GT 101817612 Upstream 74bp 24521 chr11 73071483 73071483 1 + G A rs202109402 73071484 + 73071464 73071504 41 CTGGAGCTGTGCGCCACTCGGCCCGAGGGCACCGACTCCTA CTGGAGCTGTGCGCCACTCAGCCCGAGGGCACCGACTCCTA < 41bp 0.53467936435603 0.749337610576867 NA NA prediction 0.429316492441674 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73071484 chr11:73071483 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_26940 0 0 1 0 1 ARHGEF17 chr11:73071578 5'GT 73071578 Upstream 96bp 24522 chr17 29848958 29848958 1 + C T HNSC 29848959 + 29848939 29848979 41 GCAGACGCCTAGGAAAATGCGGCACGTGTACAACAGCGAAT GCAGACGCCTAGGAAAATGTGGCACGTGTACAACAGCGAAT < 41bp 0.511815673823149 0.72646228062252 NA NA prediction 0.429293213598743 Functional Gain - RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29848959 chr17:29848958 nonsynonymous SNV 0.923 3 20 hm7G_associated_SNPs_26942 0 0 1 0 1 RAB11FIP4 chr17:29848933 3'AG 29848933 Downstream 26bp 24523 chr14 21550244 21550244 1 + G T UCEC 21550245 + 21550225 21550265 41 AGACGGACCCTGGGGAGTAGGCACCCCCCGGATGGAGCGCA AGACGGACCCTGGGGAGTATGCACCCCCCGGATGGAGCGCA < 41bp 0.362490031033854 0.714640909400574 NA NA prediction 0.429281818801148 Functional Gain - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21550245 chr14:21550244 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_26943 0 0 1 0 1 ARHGEF40 chr14:21550278 5'GT 21550278 Upstream 35bp 24524 chr1 87569223 87569223 1 + G T UCEC 87569224 + 87569204 87569244 41 ATTTTATCATGTTATTGGAGGCAGCATTGCCCCGGTTTTTC ATTTTATCATGTTATTGGATGCAGCATTGCCCCGGTTTTTC < 41bp 0.386504851912793 0.71464031624948 NA NA prediction 0.42928063249896 Functional Gain - HS2ST1 ENSG00000153936;ENSG00000267561 CDS Human other chr1:87569224 chr1:87569223 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_26944 0 0 1 0 1 HS2ST1 chr1:87569272 5'GT 87569272 Upstream 50bp 24525 chr11 57464263 57464263 1 + C T STAD 57464264 + 57464244 57464284 41 TTGGCCAAGGACAGCCCCCCGACACCTACCATGTACAAGTA TTGGCCAAGGACAGCCCCCTGACACCTACCATGTACAAGTA < 41bp 0.501804269115872 0.716437427979735 NA NA prediction 0.429266317727728 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57464264 chr11:57464263 nonsynonymous SNV 0.928 1 20 hm7G_associated_SNPs_26946 0 0 1 0 2 ZDHHC5 chr11:57464233 3'AG 57464233 Downstream 31bp 24526 chr11 57464263 57464263 1 + C T STAD 57464264 + 57464244 57464284 41 TTGGCCAAGGACAGCCCCCCGACACCTACCATGTACAAGTA TTGGCCAAGGACAGCCCCCTGACACCTACCATGTACAAGTA < 41bp 0.501804269115872 0.716437427979735 NA NA prediction 0.429266317727728 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57464264 chr11:57464263 nonsynonymous SNV 0.928 1 20 hm7G_associated_SNPs_26946 0 0 1 0 2 ZDHHC5 chr11:57464345 5'GT 57464345 Upstream 83bp 24527 chr9 82323668 82323668 1 + C T STAD 82323669 + 82323649 82323689 41 GCGCAGCTGCTGCCGCCGCCGCTGCTGCTGCTGCCTATGGG GCGCAGCTGCTGCCGCCGCTGCTGCTGCTGCTGCCTATGGG < 41bp 0.530871357315068 0.745503453231543 NA NA prediction 0.42926419183295 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323669 chr9:82323668 synonymous SNV . 0 20 hm7G_associated_SNPs_26947 0 0 0 0 1 TLE4 chr9:82323701 5'GT 82323701 Upstream 34bp 24528 chr16 31424433 31424433 1 + G A SKCM 31424434 + 31424414 31424454 41 CTGCCGGTGCTGAAAGTGGGGGTGGCCATGAGATTCAGCCC CTGCCGGTGCTGAAAGTGGAGGTGGCCATGAGATTCAGCCC < 41bp 0.517518072256017 0.732135087350391 NA NA prediction 0.429234030188747 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424434 chr16:31424433 nonsynonymous SNV 0.095 0 20 hm7G_associated_SNPs_26949 0 0 0 0 1 ITGAD chr16:31424410 3'AG 31424410 Downstream 24bp 24529 chr20 42680164 42680164 1 + G T LUSC 42680165 + 42680145 42680185 41 CCAGCTCCACTCAGGAAGAGGAGTCGGAAGTGCATTTCAAG CCAGCTCCACTCAGGAAGATGAGTCGGAAGTGCATTTCAAG < 41bp 0.367475336711238 0.714615064108951 NA NA prediction 0.429230128217902 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680165 chr20:42680164 nonsynonymous SNV 0.930 2 20 hm7G_associated_SNPs_26950 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 22bp 24530 chr3 47374728 47374728 1 + C T LAML 47374729 + 47374709 47374749 41 TGAGCTGCTGTCCAATATCCGCCTGCCCCTCTGTCGGCCCC TGAGCTGCTGTCCAATATCTGCCTGCCCCTCTGTCGGCCCC < 41bp 0.506061955136904 0.720673010414852 NA NA prediction 0.429222110555896 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374729 chr3:47374728 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26951 0 0 1 0 2 KLHL18 chr3:47374647 3'AG 47374647 Downstream 82bp 24531 chr3 47374728 47374728 1 + C T LAML 47374729 + 47374709 47374749 41 TGAGCTGCTGTCCAATATCCGCCTGCCCCTCTGTCGGCCCC TGAGCTGCTGTCCAATATCTGCCTGCCCCTCTGTCGGCCCC < 41bp 0.506061955136904 0.720673010414852 NA NA prediction 0.429222110555896 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47374729 chr3:47374728 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_26951 0 0 1 0 2 KLHL18 chr3:47374807 5'GT 47374807 Upstream 80bp 24532 chr8 1893759 1893759 1 + C T STAD 1893760 + 1893740 1893780 41 ACGCTCCGCCTTTTTCACACGGAAACTCTCAAGCACCTGCA ACGCTCCGCCTTTTTCACATGGAAACTCTCAAGCACCTGCA < 41bp 0.498590824655194 0.714596648332176 NA NA prediction 0.429193296664351 Functional Gain - ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1893760 chr8:1893759 nonsynonymous SNV 0.526 4 20 hm7G_associated_SNPs_26955 0 0 1 0 1 ARHGEF10 chr8:1893821 5'GT 1893821 Upstream 63bp 24533 chr2 239050142 239050142 1 + G A rs73102336 239050143 + 239050123 239050163 41 AGGAGTCAGAGGCATGCCGGGCAGCCCTGTCCCAGGGCCAT AGGAGTCAGAGGCATGCCGAGCAGCCCTGTCCCAGGGCCAT < 41bp 0.488515859376032 0.714582393090991 NA NA prediction 0.429164786181982 Functional Gain - KLHL30 ENSG00000168427 CDS Human protein_coding chr2:239050143 chr2:239050142 synonymous SNV . 0 20 hm7G_associated_SNPs_26956 0 0 0 0 1 KLHL30 chr2:239050169 5'GT 239050169 Upstream 28bp 24534 chr15 89169934 89169934 1 + G A rs200899445 89169935 + 89169915 89169955 41 CGCTGGAGTGGCATCACTCGGCAGCACATGCGCAAGGCTGT CGCTGGAGTGGCATCACTCAGCAGCACATGCGCAAGGCTGT < 41bp 0.508178372429048 0.722760258269737 NA NA prediction 0.429163771681378 Functional Gain - AEN ENSG00000181026 CDS Human protein_coding chr15:89169935 chr15:89169934 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_26957 0 0 1 0 1 AEN chr15:89169980 5'GT 89169980 Upstream 47bp 24535 chr17 66339809 66339809 1 + C T OV 66339810 + 66339790 66339830 41 GGCTTCCTTGCTCACCGGCCGGCTTGGCCTTCGCAATGGAG GGCTTCCTTGCTCACCGGCTGGCTTGGCCTTCGCAATGGAG < 41bp 0.519835738873172 0.734416385641541 NA NA prediction 0.429161293536737 Functional Gain - ARSG ENSG00000141337 CDS Human protein_coding chr17:66339810 chr17:66339809 nonsynonymous SNV 0.792 4 20 hm7G_associated_SNPs_26959 0 0 1 0 1 ARSG chr17:66339745 3'AG 66339745 Downstream 65bp 24536 chr1 245133662 245133662 1 + G A rs61844237 245133663 + 245133643 245133683 41 GCGGGGCGCTGAGCAGGCCGGGACACCGCGGCCGAGGTTAT GCGGGGCGCTGAGCAGGCCAGGACACCGCGGCCGAGGTTAT < 41bp 0.498752289772385 0.71457292470899 NA NA prediction 0.42914584941798 Functional Gain - LOC101928068 ENSG00000203666;ENSG00000272195 CDS Human other chr1:245133663 chr1:245133662 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_26960 0 0 0 0 1 EFCAB2 chr1:245133745 5'GT 245133745 Upstream 84bp 24537 chr17 18872443 18872443 1 + G T STAD 18872444 + 18872424 18872464 41 CTCCACCATCCTCACGCTCGGCATCACAGCCCTGTACACCA CTCCACCATCCTCACGCTCTGCATCACAGCCCTGTACACCA < 41bp 0.362522913889703 0.714572827899422 NA NA prediction 0.429145655798843 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18872444 chr17:18872443 nonsynonymous SNV 0.338 2 20 hm7G_associated_SNPs_26961 0 0 0 0 2 SLC5A10 chr17:18872365 3'AG 18872365 Downstream 79bp 24538 chr17 18872443 18872443 1 + G T STAD 18872444 + 18872424 18872464 41 CTCCACCATCCTCACGCTCGGCATCACAGCCCTGTACACCA CTCCACCATCCTCACGCTCTGCATCACAGCCCTGTACACCA < 41bp 0.362522913889703 0.714572827899422 NA NA prediction 0.429145655798843 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18872444 chr17:18872443 nonsynonymous SNV 0.338 2 20 hm7G_associated_SNPs_26961 0 0 0 0 2 SLC5A10 chr17:18872470 5'GT 18872470 Upstream 28bp 24539 chr6 97533213 97533213 1 + G T BRCA 97533214 + 97533194 97533234 41 CTGAGTGAAGAGCAGATCTGGCAGGTAAGGGCGCTGTGCAC CTGAGTGAAGAGCAGATCTTGCAGGTAAGGGCGCTGTGCAC < 41bp 0.373804020290071 0.714568422897125 NA NA prediction 0.429136845794249 Functional Gain - KLHL32 ENSG00000186231 CDS Human protein_coding chr6:97533214 chr6:97533213 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26963 0 0 0 0 1 KLHL32 chr6:97533217 5'GT 97533217 Upstream 5bp 24540 chr16 11219945 11219945 1 + G T LUAD 11219946 + 11219926 11219966 41 TCTACGACCAGGGGCGCCGGGGCAGCAGCGACCCCACAGTG TCTACGACCAGGGGCGCCGTGGCAGCAGCGACCCCACAGTG < 41bp 0.353444219717395 0.714567141193845 NA NA prediction 0.42913428238769 Functional Gain - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11219946 chr16:11219945 synonymous SNV . 0 20 hm7G_associated_SNPs_26964 0 0 1 0 1 CLEC16A chr16:11220003 5'GT 11220003 Upstream 59bp 24541 chr6 43227415 43227415 1 + G A COAD 43227416 + 43227396 43227436 41 CAGAAAGGCTGTCCACGGCGGACGGGCGAGTGGAGCTACCT CAGAAAGGCTGTCCACGGCAGACGGGCGAGTGGAGCTACCT < 41bp 0.512576151325731 0.727142584011939 NA NA prediction 0.429132865372416 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43227416 chr6:43227415 synonymous SNV . 0 20 hm7G_associated_SNPs_26965 0 0 0 0 1 TTBK1 chr6:43227444 5'GT 43227444 Upstream 30bp 24542 chr15 31206224 31206224 1 + C T STAD 31206225 + 31206205 31206245 41 CCTGTTGGTCAACCTCGGCCGAATGGAGTTTCCTAGTTACA CCTGTTGGTCAACCTCGGCTGAATGGAGTTTCCTAGTTACA < 41bp 0.5212084587343 0.735764223566152 NA NA prediction 0.429111529663706 Functional Gain - FAN1 ENSG00000198690 CDS Human protein_coding chr15:31206225 chr15:31206224 stopgain 0.724 1 20 hm7G_associated_SNPs_26968 0 0 1 0 1 FAN1 chr15:31206294 5'GT 31206294 Upstream 71bp 24543 chr9 136501796 136501796 1 + G T SARC 136501797 + 136501777 136501817 41 TTGAGAACGCAGATCTCGTGGTGCTCTGGACCGATGGGGAC TTGAGAACGCAGATCTCGTTGTGCTCTGGACCGATGGGGAC < 41bp 0.370536823542178 0.714551509991457 NA NA prediction 0.429103019982913 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136501797 chr9:136501796 synonymous SNV . 0 20 hm7G_associated_SNPs_26969 0 0 0 0 1 DBH chr9:136501832 5'GT 136501832 Upstream 37bp 24544 chr5 6737706 6737706 1 + G T UCEC 6737707 + 6737687 6737727 41 AGAAGAGAGGTGGTGAAACGGATCGAAACTGTGGTGAAAGA AGAAGAGAGGTGGTGAAACTGATCGAAACTGTGGTGAAAGA < 41bp 0.685345038718135 0.89989130615796 NA NA prediction 0.429092534879649 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6737707 chr5:6737706 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26971 0 0 1 0 2 PAPD7 chr5:6737623 3'AG 6737623 Downstream 84bp 24545 chr5 6737706 6737706 1 + G T UCEC 6737707 + 6737687 6737727 41 AGAAGAGAGGTGGTGAAACGGATCGAAACTGTGGTGAAAGA AGAAGAGAGGTGGTGAAACTGATCGAAACTGTGGTGAAAGA < 41bp 0.685345038718135 0.89989130615796 NA NA prediction 0.429092534879649 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6737707 chr5:6737706 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26971 0 0 1 0 2 PAPD7 chr5:6737746 5'GT 6737746 Upstream 41bp 24546 chr19 50957559 50957559 1 + G T LUAD 50957560 + 50957540 50957580 41 AGGCTGTGCGCATCACCTCGGTTGGAGAGGATTGGGCCATC AGGCTGTGCGCATCACCTCTGTTGGAGAGGATTGGGCCATC < 41bp 0.690575397828844 0.905118436407775 NA NA prediction 0.429086077157862 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957560 chr19:50957559 synonymous SNV . 0 20 hm7G_associated_SNPs_26973 0 0 0 0 2 MYBPC2 chr19:50957522 3'AG 50957522 Downstream 38bp 24547 chr19 50957559 50957559 1 + G T LUAD 50957560 + 50957540 50957580 41 AGGCTGTGCGCATCACCTCGGTTGGAGAGGATTGGGCCATC AGGCTGTGCGCATCACCTCTGTTGGAGAGGATTGGGCCATC < 41bp 0.690575397828844 0.905118436407775 NA NA prediction 0.429086077157862 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957560 chr19:50957559 synonymous SNV . 0 20 hm7G_associated_SNPs_26973 0 0 0 0 2 MYBPC2 chr19:50957626 5'GT 50957626 Upstream 68bp 24548 chr17 80763856 80763856 1 + C T STAD 80763857 + 80763837 80763877 41 AAGATGACGACGAAGATGACGACGTCCCAGAGGGGGTGGAG AAGATGACGACGAAGATGATGACGTCCCAGAGGGGGTGGAG < 41bp 0.512673980582717 0.727216762290882 NA NA prediction 0.42908556341633 Functional Gain - TBCD ENSG00000141556 CDS Human protein_coding chr17:80763857 chr17:80763856 synonymous SNV . 0 20 hm7G_associated_SNPs_26974 0 0 1 0 1 TBCD chr17:80763887 5'GT 80763887 Upstream 32bp 24549 chr3 38181356 38181356 1 + G T UCEC 38181357 + 38181337 38181377 41 TCTGTCTCTTCCCCACAGAGGAGGATTGCCAAAAGTATATC TCTGTCTCTTCCCCACAGATGAGGATTGCCAAAAGTATATC < 41bp 0.373854763174157 0.714540015978011 NA NA prediction 0.429080031956021 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38181357 chr3:38181356 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_26975 0 0 1 0 1 MYD88 chr3:38181355 3'AG 38181355 Downstream 2bp 24550 chr18 76752127 76752127 1 + G A SKCM 76752128 + 76752108 76752148 41 CGGGCCCGAGAGCCGCAGCGGGGGCGAGGAGACCAGCGTGT CGGGCCCGAGAGCCGCAGCAGGGGCGAGGAGACCAGCGTGT < 41bp 0.53047961495856 0.745018111756611 NA NA prediction 0.429076993596102 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76752128 chr18:76752127 nonsynonymous SNV 0.016 2 20 hm7G_associated_SNPs_26976 0 0 0 0 1 SALL3 chr18:76752074 3'AG 76752074 Downstream 54bp 24551 chr14 76091050 76091050 1 + C T HNSC 76091051 + 76091031 76091071 41 ATACTTAGGTTCCATCGCCCGGCTCTTCAAAAATCTCAACT ATACTTAGGTTCCATCGCCTGGCTCTTCAAAAATCTCAACT < 41bp 0.513124506146873 0.72765180665569 NA NA prediction 0.429054601017635 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76091051 chr14:76091050 nonsynonymous SNV 0.677 4 20 hm7G_associated_SNPs_26978 0 0 1 0 1 FLVCR2 chr14:76091095 5'GT 76091095 Upstream 46bp 24552 chr17 4351559 4351559 1 + G A LUAD 4351560 + 4351540 4351580 41 GGGGCCGTGGGAGGCTTCAGGAGCAGCTGGTGTGAGGACGT GGGGCCGTGGGAGGCTTCAAGAGCAGCTGGTGTGAGGACGT < 41bp 0.513209661450178 0.727732588306572 NA NA prediction 0.429045853712788 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4351560 chr17:4351559 nonsynonymous SNV 0.668 1 20 hm7G_associated_SNPs_26979 0 0 0 0 1 SPNS3 chr17:4351598 5'GT 4351598 Upstream 40bp 24553 chr15 89172551 89172551 1 + G A STAD 89172552 + 89172532 89172572 41 CACCCTCGGAGCCAGACCCGGGATACGACCTATGTCCCAAA CACCCTCGGAGCCAGACCCAGGATACGACCTATGTCCCAAA < 41bp 0.531368886386976 0.745890531111232 NA NA prediction 0.429043289448511 Functional Gain - AEN ENSG00000181026 CDS Human protein_coding chr15:89172552 chr15:89172551 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_26980 0 0 0 0 1 AEN chr15:89172457 3'AG 89172457 Downstream 95bp 24554 chr12 54963070 54963070 1 + G T LUAD 54963071 + 54963051 54963091 41 CCTTCACCCAGCAGGCCCGGGCCAAAGGCCGCCGAGCAGAG CCTTCACCCAGCAGGCCCGTGCCAAAGGCCGCCGAGCAGAG < 41bp 0.608972368612175 0.823492389456479 NA NA prediction 0.429040041688607 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54963071 chr12:54963070 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26981 0 0 0 0 2 PDE1B chr12:54963065 3'AG 54963065 Downstream 6bp 24555 chr12 54963070 54963070 1 + G T LUAD 54963071 + 54963051 54963091 41 CCTTCACCCAGCAGGCCCGGGCCAAAGGCCGCCGAGCAGAG CCTTCACCCAGCAGGCCCGTGCCAAAGGCCGCCGAGCAGAG < 41bp 0.608972368612175 0.823492389456479 NA NA prediction 0.429040041688607 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54963071 chr12:54963070 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_26981 0 0 0 0 2 PDE1B chr12:54963150 5'GT 54963150 Upstream 81bp 24556 chr1 9307076 9307076 1 + G A rs142080875 9307077 + 9307057 9307097 41 GAACCGCAAGGCTTTGGACGGCCTCTGGAACCGGCACCATG GAACCGCAAGGCTTTGGACAGCCTCTGGAACCGGCACCATG < 41bp 0.498459467009126 0.714516694829593 NA NA prediction 0.429033389659186 Functional Gain - H6PD ENSG00000049239 CDS Human protein_coding chr1:9307077 chr1:9307076 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_26982 0 0 0 0 2 H6PD chr1:9307025 3'AG 9307025 Downstream 52bp 24557 chr1 9307076 9307076 1 + G A rs142080875 9307077 + 9307057 9307097 41 GAACCGCAAGGCTTTGGACGGCCTCTGGAACCGGCACCATG GAACCGCAAGGCTTTGGACAGCCTCTGGAACCGGCACCATG < 41bp 0.498459467009126 0.714516694829593 NA NA prediction 0.429033389659186 Functional Gain - H6PD ENSG00000049239 CDS Human protein_coding chr1:9307077 chr1:9307076 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_26982 0 0 0 0 2 H6PD chr1:9307142 5'GT 9307142 Upstream 67bp 24558 chr12 113444346 113444346 1 + C T UCEC 113444347 + 113444327 113444367 41 CCTGCAGCGAAACTTCATTCGCTCCCGGCCCACCAAACTAA CCTGCAGCGAAACTTCATTTGCTCCCGGCCCACCAAACTAA < 41bp 0.505619554658835 0.720127677113935 NA NA prediction 0.4290162449102 Functional Gain - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113444347 chr12:113444346 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_26986 0 0 0 0 1 OAS2 chr12:113444405 5'GT 113444405 Upstream 60bp 24559 chr6 42906404 42906404 1 + G T COAD 42906405 + 42906385 42906425 41 CAGGGCCAAGGCAGCAGGCGGCAGGAGTAGCAGCAGCAAAC CAGGGCCAAGGCAGCAGGCTGCAGGAGTAGCAGCAGCAAAC < 41bp 0.682909018133133 0.897412735024017 NA NA prediction 0.429007433781768 Functional Gain - CNPY3 ENSG00000137161 CDS Human protein_coding chr6:42906405 chr6:42906404 nonsynonymous SNV 0.321 1 20 hm7G_associated_SNPs_26988 0 0 1 0 1 CNPY3 chr6:42906306 3'AG 42906306 Downstream 99bp 24560 chr12 32890055 32890055 1 + G T STAD 32890056 + 32890036 32890076 41 TAGGAACAAAGGAGAAACAGGCTAGCCAGAGAATTACCTTC TAGGAACAAAGGAGAAACATGCTAGCCAGAGAATTACCTTC < 41bp 0.683210645811544 0.8977138834078 NA NA prediction 0.429006475192512 Functional Gain - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32890056 chr12:32890055 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26989 0 0 0 0 2 DNM1L chr12:32890039 3'AG 32890039 Downstream 17bp 24561 chr12 32890055 32890055 1 + G T STAD 32890056 + 32890036 32890076 41 TAGGAACAAAGGAGAAACAGGCTAGCCAGAGAATTACCTTC TAGGAACAAAGGAGAAACATGCTAGCCAGAGAATTACCTTC < 41bp 0.683210645811544 0.8977138834078 NA NA prediction 0.429006475192512 Functional Gain - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32890056 chr12:32890055 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_26989 0 0 0 0 2 DNM1L chr12:32890095 5'GT 32890095 Upstream 41bp 24562 chr19 4501967 4501967 1 + G A UCEC 4501968 + 4501948 4501988 41 GACAGGCCTGGGAGCGACCGGCAGGAGCGCGAGAGGGCACG GACAGGCCTGGGAGCGACCAGCAGGAGCGCGAGAGGGCACG < 41bp 0.553739796861312 0.76823864538043 NA NA prediction 0.428997697038236 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4501968 chr19:4501967 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_26991 0 0 1 0 2 HDGFL2 chr19:4501923 3'AG 4501923 Downstream 45bp 24563 chr19 4501967 4501967 1 + G A UCEC 4501968 + 4501948 4501988 41 GACAGGCCTGGGAGCGACCGGCAGGAGCGCGAGAGGGCACG GACAGGCCTGGGAGCGACCAGCAGGAGCGCGAGAGGGCACG < 41bp 0.553739796861312 0.76823864538043 NA NA prediction 0.428997697038236 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4501968 chr19:4501967 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_26991 0 0 1 0 2 HDGFL2 chr19:4501926 3'AG 4501926 Downstream 42bp 24564 chr4 27019389 27019389 1 + C T COAD 27019390 + 27019370 27019410 41 CAGCAGCCTGTGCCGTTCACGCCGCAGCATTGTGCCGTCCT CAGCAGCCTGTGCCGTTCATGCCGCAGCATTGTGCCGTCCT < 41bp 0.508095597321547 0.722591307297959 NA NA prediction 0.428991419952825 Functional Gain - STIM2 ENSG00000109689 CDS Human protein_coding chr4:27019390 chr4:27019389 nonsynonymous SNV 0.754 4 20 hm7G_associated_SNPs_26992 0 0 1 0 1 STIM2 chr4:27019333 3'AG 27019333 Downstream 57bp 24565 chr9 134312039 134312039 1 + C T UCEC 134312040 + 134312020 134312060 41 GCCTCTCAGCCGCCGGAGTCGCTGCCGCAGCCGGGTTTGCA GCCTCTCAGCCGCCGGAGTTGCTGCCGCAGCCGGGTTTGCA < 41bp 0.522003869062461 0.736498936194878 NA NA prediction 0.428990134264834 Functional Gain - PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134312040 chr9:134312039 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_26993 0 0 1 0 2 PRRC2B chr9:134312007 3'AG 134312007 Downstream 33bp 24566 chr9 134312039 134312039 1 + C T UCEC 134312040 + 134312020 134312060 41 GCCTCTCAGCCGCCGGAGTCGCTGCCGCAGCCGGGTTTGCA GCCTCTCAGCCGCCGGAGTTGCTGCCGCAGCCGGGTTTGCA < 41bp 0.522003869062461 0.736498936194878 NA NA prediction 0.428990134264834 Functional Gain - PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134312040 chr9:134312039 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_26993 0 0 1 0 2 PRRC2B chr9:134312109 5'GT 134312109 Upstream 71bp 24567 chr1 41285139 41285139 1 + G A SKCM 41285140 + 41285120 41285160 41 CGCCGACTCGCTCTGGTGGGGGACGGTGCGTGAGGGTCTTT CGCCGACTCGCTCTGGTGGAGGACGGTGCGTGAGGGTCTTT < 41bp 0.524360611020705 0.738845024863378 NA NA prediction 0.428968827685345 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285140 chr1:41285139 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_26994 1 0 0 0 1 KCNQ4 chr1:41285144 5'GT 41285144 Upstream 6bp 24568 chr11 122650322 122650322 1 + G T SKCM 122650323 + 122650303 122650343 41 TACGTCGTCCAACTTCATCGGCCTCTTTGTAAAGGAAGACA TACGTCGTCCAACTTCATCTGCCTCTTTGTAAAGGAAGACA < 41bp 0.365387678982405 0.714479179621762 NA NA prediction 0.428958359243525 Functional Gain - UBASH3B ENSG00000154127 CDS Human protein_coding chr11:122650323 chr11:122650322 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_26996 0 0 0 0 1 UBASH3B chr11:122650403 5'GT 122650403 Upstream 82bp 24569 chr7 134221859 134221859 1 + G A rs376395703 134221860 + 134221840 134221880 41 TCCAGTACTGCCACTCCAAGGGCATCACCGTTACGGCCTAC TCCAGTACTGCCACTCCAAAGGCATCACCGTTACGGCCTAC < 41bp 0.518468111231402 0.7329423830607 NA NA prediction 0.428948543658595 Functional Gain - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134221860 chr7:134221859 synonymous SNV . 0 20 hm7G_associated_SNPs_26998 0 0 0 0 2 AKR1B10 chr7:134221803 3'AG 134221803 Downstream 57bp 24570 chr7 134221859 134221859 1 + G A rs376395703 134221860 + 134221840 134221880 41 TCCAGTACTGCCACTCCAAGGGCATCACCGTTACGGCCTAC TCCAGTACTGCCACTCCAAAGGCATCACCGTTACGGCCTAC < 41bp 0.518468111231402 0.7329423830607 NA NA prediction 0.428948543658595 Functional Gain - AKR1B10 ENSG00000198074 CDS Human protein_coding chr7:134221860 chr7:134221859 synonymous SNV . 0 20 hm7G_associated_SNPs_26998 0 0 0 0 2 AKR1B10 chr7:134221909 5'GT 134221909 Upstream 51bp 24571 chr6 151140864 151140864 1 + C T rs150554027 151140865 + 151140845 151140885 41 GAGGGACGAAAGCACTGTTCGGCTCTAAAGAAGGTTCTGCT GAGGGACGAAAGCACTGTTTGGCTCTAAAGAAGGTTCTGCT < 41bp 0.510664738324843 0.72513442366705 NA NA prediction 0.428939370684415 Functional Gain - PLEKHG1 ENSG00000120278 CDS Human protein_coding chr6:151140865 chr6:151140864 synonymous SNV . 0 20 hm7G_associated_SNPs_26999 0 0 0 0 2 PLEKHG1 chr6:151140815 3'AG 151140815 Downstream 50bp 24572 chr6 151140864 151140864 1 + C T rs150554027 151140865 + 151140845 151140885 41 GAGGGACGAAAGCACTGTTCGGCTCTAAAGAAGGTTCTGCT GAGGGACGAAAGCACTGTTTGGCTCTAAAGAAGGTTCTGCT < 41bp 0.510664738324843 0.72513442366705 NA NA prediction 0.428939370684415 Functional Gain - PLEKHG1 ENSG00000120278 CDS Human protein_coding chr6:151140865 chr6:151140864 synonymous SNV . 0 20 hm7G_associated_SNPs_26999 0 0 0 0 2 PLEKHG1 chr6:151140910 5'GT 151140910 Upstream 47bp 24573 chr7 155532685 155532685 1 + C T COAD 155532686 + 155532666 155532706 41 GCCTCAGGCCAGCAGCAGCCGGATGCAGTGCCCCCAGCGCC GCCTCAGGCCAGCAGCAGCTGGATGCAGTGCCCCCAGCGCC < 41bp 0.516009548498595 0.730474655569413 NA NA prediction 0.428930214141635 Functional Gain - RBM33 ENSG00000184863 CDS Human protein_coding chr7:155532686 chr7:155532685 nonsynonymous SNV 0.880 4 20 hm7G_associated_SNPs_27000 0 0 1 0 1 RBM33 chr7:155532720 5'GT 155532720 Upstream 36bp 24574 chr4 89425434 89425434 1 + G T COAD 89425435 + 89425415 89425455 41 TTTTCAACGACTCTGTAAAGGCGGTTTATGAAGAATTTCGG TTTTCAACGACTCTGTAAATGCGGTTTATGAAGAATTTCGG < 41bp 0.387570699923439 0.714456301756229 NA NA prediction 0.428912603512458 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89425435 chr4:89425434 nonsynonymous SNV 0.022 0 20 hm7G_associated_SNPs_27001 0 0 0 0 1 HERC5 chr4:89425383 3'AG 89425383 Downstream 52bp 24575 chr1 113638551 113638551 1 + C T rs571181012 113638552 + 113638532 113638572 41 GGGGTGGTTGTATGGCTTGCGAATGTTACAGCAGCTCTATG GGGGTGGTTGTATGGCTTGTGAATGTTACAGCAGCTCTATG < 41bp 0.510479779220128 0.724936012237629 NA NA prediction 0.428912466035001 Functional Gain - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113638552 chr1:113638551 stopgain 0.999 1 20 hm7G_associated_SNPs_27002 0 0 1 0 2 LRIG2 chr1:113638496 3'AG 113638496 Downstream 56bp 24576 chr1 113638551 113638551 1 + C T rs571181012 113638552 + 113638532 113638572 41 GGGGTGGTTGTATGGCTTGCGAATGTTACAGCAGCTCTATG GGGGTGGTTGTATGGCTTGTGAATGTTACAGCAGCTCTATG < 41bp 0.510479779220128 0.724936012237629 NA NA prediction 0.428912466035001 Functional Gain - LRIG2 ENSG00000198799 CDS Human protein_coding chr1:113638552 chr1:113638551 stopgain 0.999 1 20 hm7G_associated_SNPs_27002 0 0 1 0 2 LRIG2 chr1:113638639 5'GT 113638639 Upstream 89bp 24577 chr4 88356355 88356355 1 + G T LUSC 88356356 + 88356336 88356376 41 TCTTGGCTGGACCCAGGTGGGCAGATCCTCAGATCAGGTGA TCTTGGCTGGACCCAGGTGTGCAGATCCTCAGATCAGGTGA < 41bp 0.689391414684615 0.903843698052659 NA NA prediction 0.428904566736089 Functional Gain - NUDT9 ENSG00000170502 CDS Human protein_coding chr4:88356356 chr4:88356355 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_27003 0 0 1 0 1 NUDT9 chr4:88356372 5'GT 88356372 Upstream 18bp 24578 chr9 130236155 130236155 1 + G A BLCA 130236156 + 130236136 130236176 41 GATGGAATCGAGAACTCTCGGGACAGCCCTGATGGGCCCAC GATGGAATCGAGAACTCTCAGGACAGCCCTGATGGGCCCAC < 41bp 0.519336086249007 0.733787976424522 NA NA prediction 0.42890378035103 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130236156 chr9:130236155 nonsynonymous SNV 0.193 0 20 hm7G_associated_SNPs_27004 0 0 1 0 1 LRSAM1 chr9:130236210 5'GT 130236210 Upstream 56bp 24579 chr7 27831672 27831672 1 + G T UCEC 27831673 + 27831653 27831693 41 TTCGTAAAGCAGAGGAACAGGTTCAGGCAACTCGGCAAGAA TTCGTAAAGCAGAGGAACATGTTCAGGCAACTCGGCAAGAA < 41bp 0.677874734186087 0.892310417280684 NA NA prediction 0.428871366189194 Functional Gain - TAX1BP1 ENSG00000106052 CDS Human protein_coding chr7:27831673 chr7:27831672 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27006 0 0 1 0 1 TAX1BP1 chr7:27831625 3'AG 27831625 Downstream 48bp 24580 chr5 150050196 150050196 1 + G A STAD 150050197 + 150050177 150050217 41 GAGTTAGCAGCCAGCCAGCGGGCGGTGAGTAAGCCACCATT GAGTTAGCAGCCAGCCAGCAGGCGGTGAGTAAGCCACCATT < 41bp 0.507086892851062 0.721516891254322 NA NA prediction 0.42885999680652 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150050197 chr5:150050196 nonsynonymous SNV 0.119 0 20 hm7G_associated_SNPs_27007 0 0 0 0 1 MYOZ3 chr5:150050200 5'GT 150050200 Upstream 5bp 24581 chr3 52557097 52557097 1 + G T HNSC 52557098 + 52557078 52557118 41 CGGGATCAGCACGTGCAATGGGAAGCTGCTGGATGTGCTGG CGGGATCAGCACGTGCAATTGGAAGCTGCTGGATGTGCTGG < 41bp 0.374014686187424 0.714425851706988 NA NA prediction 0.428851703413976 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52557098 chr3:52557097 nonsynonymous SNV 0.882 5 20 hm7G_associated_SNPs_27008 0 0 0 0 2 STAB1 chr3:52557041 3'AG 52557041 Downstream 57bp 24582 chr3 52557097 52557097 1 + G T HNSC 52557098 + 52557078 52557118 41 CGGGATCAGCACGTGCAATGGGAAGCTGCTGGATGTGCTGG CGGGATCAGCACGTGCAATTGGAAGCTGCTGGATGTGCTGG < 41bp 0.374014686187424 0.714425851706988 NA NA prediction 0.428851703413976 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52557098 chr3:52557097 nonsynonymous SNV 0.882 5 20 hm7G_associated_SNPs_27008 0 0 0 0 2 STAB1 chr3:52557150 5'GT 52557150 Upstream 54bp 24583 chr13 25141035 25141035 1 + G T UCEC 25141036 + 25141016 25141056 41 CCATGAAGCAATAAACATAGGAGGTAGGGATTTGAAGCAAA CCATGAAGCAATAAACATATGAGGTAGGGATTTGAAGCAAA < 41bp 0.427296515250606 0.714422573292411 NA NA prediction 0.428845146584821 Functional Gain - PARP4;TPTE2P6 ENSG00000243008;ENSG00000244615 ncRNA_exonic Human other chr13:25141036 chr13:25141035 . . 0 20 hm7G_associated_SNPs_27009 0 0 0 0 1 PARP4;TPTE2P6 chr13:25141038 5'GT 25141038 Upstream 4bp 24584 chr1 227165161 227165161 1 + G A UCEC 227165162 + 227165142 227165182 41 CCTTGCAGGTCTGGCCGTGGGCCTGGGCTTCGGGGCACTGG CCTTGCAGGTCTGGCCGTGAGCCTGGGCTTCGGGGCACTGG < 41bp 0.546424737509768 0.760839417979706 NA NA prediction 0.428829360939877 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227165162 chr1:227165161 nonsynonymous SNV 0.964 1 20 hm7G_associated_SNPs_27010 0 0 1 0 2 COQ8A chr1:227165150 3'AG 227165150 Downstream 12bp 24585 chr1 227165161 227165161 1 + G A UCEC 227165162 + 227165142 227165182 41 CCTTGCAGGTCTGGCCGTGGGCCTGGGCTTCGGGGCACTGG CCTTGCAGGTCTGGCCGTGAGCCTGGGCTTCGGGGCACTGG < 41bp 0.546424737509768 0.760839417979706 NA NA prediction 0.428829360939877 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227165162 chr1:227165161 nonsynonymous SNV 0.964 1 20 hm7G_associated_SNPs_27010 0 0 1 0 2 COQ8A chr1:227165224 5'GT 227165224 Upstream 64bp 24586 chr2 238990769 238990769 1 + G A HNSC 238990770 + 238990750 238990790 41 CTCCCATCCTCGTGCACACGGATGCTGCACAGGCCTTGGGG CTCCCATCCTCGTGCACACAGATGCTGCACAGGCCTTGGGG < 41bp 0.518811277572235 0.733215938711033 NA NA prediction 0.428809322277595 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990770 chr2:238990769 synonymous SNV . 0 20 hm7G_associated_SNPs_27011 0 0 1 0 2 SCLY chr2:238990686 3'AG 238990686 Downstream 84bp 24587 chr2 238990769 238990769 1 + G A HNSC 238990770 + 238990750 238990790 41 CTCCCATCCTCGTGCACACGGATGCTGCACAGGCCTTGGGG CTCCCATCCTCGTGCACACAGATGCTGCACAGGCCTTGGGG < 41bp 0.518811277572235 0.733215938711033 NA NA prediction 0.428809322277595 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990770 chr2:238990769 synonymous SNV . 0 20 hm7G_associated_SNPs_27011 0 0 1 0 2 SCLY chr2:238990850 5'GT 238990850 Upstream 82bp 24588 chr1 228210553 228210553 1 + G A BLCA 228210554 + 228210534 228210574 41 CAGTTCCGCGGCCGCCGGTGGAACTGCACCACCGTCCACGA CAGTTCCGCGGCCGCCGGTAGAACTGCACCACCGTCCACGA < 41bp 0.509288956324055 0.723680147237916 NA NA prediction 0.42878238182772 Functional Gain - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228210554 chr1:228210553 stopgain 0.900 1 20 hm7G_associated_SNPs_27013 0 0 0 0 1 WNT3A chr1:228210609 5'GT 228210609 Upstream 57bp 24589 chr15 80472543 80472543 1 + G A LUSC 80472544 + 80472524 80472564 41 TGCGGCCGGGGGACCTCCTGGCTTCTGGGACCATCAGCGGG TGCGGCCGGGGGACCTCCTAGCTTCTGGGACCATCAGCGGG < 41bp 0.531383872511204 0.745773895054837 NA NA prediction 0.428780045087267 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80472544 chr15:80472543 synonymous SNV . 0 20 hm7G_associated_SNPs_27014 0 0 1 0 2 FAH chr15:80472466 3'AG 80472466 Downstream 78bp 24590 chr15 80472543 80472543 1 + G A LUSC 80472544 + 80472524 80472564 41 TGCGGCCGGGGGACCTCCTGGCTTCTGGGACCATCAGCGGG TGCGGCCGGGGGACCTCCTAGCTTCTGGGACCATCAGCGGG < 41bp 0.531383872511204 0.745773895054837 NA NA prediction 0.428780045087267 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80472544 chr15:80472543 synonymous SNV . 0 20 hm7G_associated_SNPs_27014 0 0 1 0 2 FAH chr15:80472567 5'GT 80472567 Upstream 25bp 24591 chr1 203008291 203008291 1 + C T rs115895463 203008292 + 203008272 203008312 41 GAGAGTCAGGAGACCTTGGCGGCCACACAGAGCCGGCTCCA GAGAGTCAGGAGACCTTGGTGGCCACACAGAGCCGGCTCCA < 41bp 0.510662140705367 0.72502547263544 NA NA prediction 0.428726663860146 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203008292 chr1:203008291 nonsynonymous SNV 0.774 0 20 hm7G_associated_SNPs_27019 0 0 0 0 1 PPFIA4 chr1:203008370 5'GT 203008370 Upstream 80bp 24592 chr8 121259908 121259908 1 + C T GBM 121259909 + 121259889 121259929 41 GGAATGGTATAACCGGTTGCGCATTACGTGGGACCCCCCAT GGAATGGTATAACCGGTTGTGCATTACGTGGGACCCCCCAT < 41bp 0.500163660292046 0.7145155319447 NA NA prediction 0.428703743305309 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259909 chr8:121259908 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_27020 0 0 0 0 2 COL14A1 chr8:121259852 3'AG 121259852 Downstream 57bp 24593 chr8 121259908 121259908 1 + C T GBM 121259909 + 121259889 121259929 41 GGAATGGTATAACCGGTTGCGCATTACGTGGGACCCCCCAT GGAATGGTATAACCGGTTGTGCATTACGTGGGACCCCCCAT < 41bp 0.500163660292046 0.7145155319447 NA NA prediction 0.428703743305309 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121259909 chr8:121259908 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_27020 0 0 0 0 2 COL14A1 chr8:121259974 5'GT 121259974 Upstream 67bp 24594 chr3 9747737 9747737 1 + C T STAD 9747738 + 9747718 9747758 41 CCAGGGCAGCCGAGTAGAGCGAACCCTCACGTAAGCTGAAT CCAGGGCAGCCGAGTAGAGTGAACCCTCACGTAAGCTGAAT < 41bp 0.500251716080975 0.714603558413696 NA NA prediction 0.428703684665443 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9747738 chr3:9747737 stopgain 0.861 1 20 hm7G_associated_SNPs_27021 0 0 0 0 2 CPNE9 chr3:9747671 3'AG 9747671 Downstream 67bp 24595 chr3 9747737 9747737 1 + C T STAD 9747738 + 9747718 9747758 41 CCAGGGCAGCCGAGTAGAGCGAACCCTCACGTAAGCTGAAT CCAGGGCAGCCGAGTAGAGTGAACCCTCACGTAAGCTGAAT < 41bp 0.500251716080975 0.714603558413696 NA NA prediction 0.428703684665443 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9747738 chr3:9747737 stopgain 0.861 1 20 hm7G_associated_SNPs_27021 0 0 0 0 2 CPNE9 chr3:9747747 5'GT 9747747 Upstream 11bp 24596 chr19 18234810 18234810 1 + G A rs35945810 18234811 + 18234791 18234831 41 GCCTACGCGCCCGGCGCCCGGCTGGCGCTGGCTGATGGCGT GCCTACGCGCCCGGCGCCCAGCTGGCGCTGGCTGATGGCGT < 41bp 0.565927075695843 0.780273539008849 NA NA prediction 0.428692926626011 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18234811 chr19:18234810 nonsynonymous SNV 0.823 0 20 hm7G_associated_SNPs_27023 0 0 0 0 1 MAST3 chr19:18234749 3'AG 18234749 Downstream 62bp 24597 chr19 51379746 51379746 1 + G A LUAD 51379747 + 51379727 51379767 41 GGAATAGCCAGGTCTGGCTGGGTCGGCACAACCTGTTTGAG GGAATAGCCAGGTCTGGCTAGGTCGGCACAACCTGTTTGAG < 41bp 0.489316420396976 0.714345360493365 NA NA prediction 0.42869072098673 Functional Gain - KLK2 ENSG00000167751 CDS Human protein_coding chr19:51379747 chr19:51379746 stopgain . 0 20 hm7G_associated_SNPs_27024 0 0 0 0 1 KLK2 chr19:51379728 3'AG 51379728 Downstream 19bp 24598 chr17 39975632 39975632 1 + G A LUAD 39975633 + 39975613 39975653 41 CAATGGCTCCTTGATGGACGGCACCCTCTTCGATTCCAGGT CAATGGCTCCTTGATGGACAGCACCCTCTTCGATTCCAGGT < 41bp 0.524228629288594 0.738567657661888 NA NA prediction 0.428678056746588 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39975633 chr17:39975632 nonsynonymous SNV 0.938 5 20 hm7G_associated_SNPs_27028 0 0 1 0 1 FKBP10 chr17:39975651 5'GT 39975651 Upstream 20bp 24599 chr16 57608738 57608738 1 + G A UCEC 57608739 + 57608719 57608759 41 CCCTGCAGATGCTGGGTGCGGAGCCCCGTGGTGCACAGTGT CCCTGCAGATGCTGGGTGCAGAGCCCCGTGGTGCACAGTGT < 41bp 0.51079174720561 0.725125754670194 NA NA prediction 0.428668014929168 Functional Gain - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57608739 chr16:57608738 nonsynonymous SNV 0.371 0 20 hm7G_associated_SNPs_27030 0 0 0 0 1 ADGRG5 chr16:57608727 3'AG 57608727 Downstream 12bp 24600 chr7 66463151 66463151 1 + G T LUSC 66463152 + 66463132 66463172 41 GCTGTTAGCATTAGCCTTTGGATTTGTGTCCAGATTGTCAT GCTGTTAGCATTAGCCTTTTGATTTGTGTCCAGATTGTCAT < 41bp 0.379365732158657 0.714332702694429 NA NA prediction 0.428665405388857 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66463152 chr7:66463151 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_27031 0 0 1 0 2 TYW1 chr7:66463052 3'AG 66463052 Downstream 100bp 24601 chr7 66463151 66463151 1 + G T LUSC 66463152 + 66463132 66463172 41 GCTGTTAGCATTAGCCTTTGGATTTGTGTCCAGATTGTCAT GCTGTTAGCATTAGCCTTTTGATTTGTGTCCAGATTGTCAT < 41bp 0.379365732158657 0.714332702694429 NA NA prediction 0.428665405388857 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66463152 chr7:66463151 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_27031 0 0 1 0 2 TYW1 chr7:66463182 5'GT 66463182 Upstream 32bp 24602 chr19 33663258 33663258 1 + G T STAD 33663259 + 33663239 33663279 41 TGCTATTTGTTTTAGGATAGGACCATGAGACTGTGGAATAT TGCTATTTGTTTTAGGATATGACCATGAGACTGTGGAATAT < 41bp 0.665507140872413 0.879838612070024 NA NA prediction 0.428662942395222 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33663259 chr19:33663258 nonsynonymous SNV 0.865 1 20 hm7G_associated_SNPs_27033 0 0 0 0 2 WDR88 chr19:33663254 3'AG 33663254 Downstream 5bp 24603 chr19 33663258 33663258 1 + G T STAD 33663259 + 33663239 33663279 41 TGCTATTTGTTTTAGGATAGGACCATGAGACTGTGGAATAT TGCTATTTGTTTTAGGATATGACCATGAGACTGTGGAATAT < 41bp 0.665507140872413 0.879838612070024 NA NA prediction 0.428662942395222 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33663259 chr19:33663258 nonsynonymous SNV 0.865 1 20 hm7G_associated_SNPs_27033 0 0 0 0 2 WDR88 chr19:33663346 5'GT 33663346 Upstream 89bp 24604 chr20 24646002 24646002 1 + G A SKCM 24646003 + 24645983 24646023 41 CCAACAAAGCCGTGGCCAAGGGGGACTTGCACCAGGCCAGC CCAACAAAGCCGTGGCCAAAGGGGACTTGCACCAGGCCAGC < 41bp 0.50490357682474 0.719234025211553 NA NA prediction 0.428660896773627 Functional Gain - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24646003 chr20:24646002 synonymous SNV . 0 20 hm7G_associated_SNPs_27034 0 0 0 0 1 SYNDIG1 chr20:24645982 3'AG 24645982 Downstream 21bp 24605 chr1 16381976 16381976 1 + G T UCEC 16381977 + 16381957 16381997 41 GAAGGGCCCAGCTGGTGCAGGCCCTGAAGGCTGAGCCTCCT GAAGGGCCCAGCTGGTGCATGCCCTGAAGGCTGAGCCTCCT < 41bp 0.690618075799824 0.904945780679537 NA NA prediction 0.428655409759426 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16381977 chr1:16381976 nonsynonymous SNV 0.684 1 20 hm7G_associated_SNPs_27036 0 0 1 0 1 CLCNKB chr1:16382018 5'GT 16382018 Upstream 43bp 24606 chr13 111289537 111289537 1 + G A SKCM 111289538 + 111289518 111289558 41 GGCAAGGGGACCTCCTGTCGGGCTCCCTGGGCGTCCTGGTA GGCAAGGGGACCTCCTGTCAGGCTCCCTGGGCGTCCTGGTA < 41bp 0.516870631512333 0.731195462779811 NA NA prediction 0.428649662534957 Functional Gain - NAXD ENSG00000213995 CDS Human protein_coding chr13:111289538 chr13:111289537 synonymous SNV . 0 20 hm7G_associated_SNPs_27038 0 0 1 0 2 NAXD chr13:111289476 3'AG 111289476 Downstream 62bp 24607 chr13 111289537 111289537 1 + G A SKCM 111289538 + 111289518 111289558 41 GGCAAGGGGACCTCCTGTCGGGCTCCCTGGGCGTCCTGGTA GGCAAGGGGACCTCCTGTCAGGCTCCCTGGGCGTCCTGGTA < 41bp 0.516870631512333 0.731195462779811 NA NA prediction 0.428649662534957 Functional Gain - NAXD ENSG00000213995 CDS Human protein_coding chr13:111289538 chr13:111289537 synonymous SNV . 0 20 hm7G_associated_SNPs_27038 0 0 1 0 2 NAXD chr13:111289596 5'GT 111289596 Upstream 60bp 24608 chr17 74075563 74075563 1 + G A SKCM 74075564 + 74075544 74075584 41 ACTTGTCCAAGAAGGTTCAGGAAAGCATCCAGATCCCGAAC ACTTGTCCAAGAAGGTTCAAGAAAGCATCCAGATCCCGAAC < 41bp 0.503361121397108 0.717652217932906 NA NA prediction 0.428582193071596 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075564 chr17:74075563 synonymous SNV . 0 20 hm7G_associated_SNPs_27043 0 0 0 0 2 ZACN chr17:74075520 3'AG 74075520 Downstream 44bp 24609 chr17 74075563 74075563 1 + G A SKCM 74075564 + 74075544 74075584 41 ACTTGTCCAAGAAGGTTCAGGAAAGCATCCAGATCCCGAAC ACTTGTCCAAGAAGGTTCAAGAAAGCATCCAGATCCCGAAC < 41bp 0.503361121397108 0.717652217932906 NA NA prediction 0.428582193071596 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075564 chr17:74075563 synonymous SNV . 0 20 hm7G_associated_SNPs_27043 0 0 0 0 2 ZACN chr17:74075644 5'GT 74075644 Upstream 82bp 24610 chr5 176005418 176005418 1 + G A rs34485432 176005419 + 176005399 176005439 41 GACGGTGACGGTGAGGAACGGTGAGCTGCTGGACCGGGAGA GACGGTGACGGTGAGGAACAGTGAGCTGCTGGACCGGGAGA < 41bp 0.503880147255006 0.718170087506965 NA NA prediction 0.428579880503917 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176005419 chr5:176005418 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_27045 0 0 0 0 1 CDHR2 chr5:176005366 3'AG 176005366 Downstream 53bp 24611 chr21 38865350 38865350 1 + G T LIHC 38865351 + 38865331 38865371 41 ATTCAGAGTCGCTTTTATCGGTCTCCAGAGGTGCTACTGGG ATTCAGAGTCGCTTTTATCTGTCTCCAGAGGTGCTACTGGG < 41bp 0.390096664752468 0.714287804101163 NA NA prediction 0.428575608202327 Functional Gain - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38865351 chr21:38865350 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27047 0 0 1 0 1 DYRK1A chr21:38865319 3'AG 38865319 Downstream 32bp 24612 chr3 424303 424303 1 + G T LUAD 424304 + 424284 424324 41 CATAGCCGTGAACGAAGTAGGGAGAAGTCAGCCTAGCCAGC CATAGCCGTGAACGAAGTATGGAGAAGTCAGCCTAGCCAGC < 41bp 0.382153865050033 0.714287631467628 NA NA prediction 0.428575262935256 Functional Gain - CHL1 ENSG00000134121 CDS Human protein_coding chr3:424304 chr3:424303 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_27048 0 0 0 0 1 CHL1 chr3:424354 5'GT 424354 Upstream 52bp 24613 chr7 2289541 2289541 1 + G A LUAD 2289542 + 2289522 2289562 41 GGACGCCCTGCACAAGGTGGGCCAGATCGTGTTTGAGTTCG GGACGCCCTGCACAAGGTGAGCCAGATCGTGTTTGAGTTCG < 41bp 0.537247315464625 0.751522950960082 NA NA prediction 0.428551270990913 Functional Gain - NUDT1 ENSG00000106268 CDS Human protein_coding chr7:2289542 chr7:2289541 nonsynonymous SNV 0.950 4 20 hm7G_associated_SNPs_27050 0 0 1 0 2 NUDT1 chr7:2289492 3'AG 2289492 Downstream 50bp 24614 chr7 2289541 2289541 1 + G A LUAD 2289542 + 2289522 2289562 41 GGACGCCCTGCACAAGGTGGGCCAGATCGTGTTTGAGTTCG GGACGCCCTGCACAAGGTGAGCCAGATCGTGTTTGAGTTCG < 41bp 0.537247315464625 0.751522950960082 NA NA prediction 0.428551270990913 Functional Gain - NUDT1 ENSG00000106268 CDS Human protein_coding chr7:2289542 chr7:2289541 nonsynonymous SNV 0.950 4 20 hm7G_associated_SNPs_27050 0 0 1 0 2 NUDT1 chr7:2289637 5'GT 2289637 Upstream 97bp 24615 chr9 91606475 91606475 1 + G A UCEC 91606476 + 91606456 91606496 41 CGAGCAGGACCCCAGGCCCGGGAACGACGTCGCGAGCGCTG CGAGCAGGACCCCAGGCCCAGGAACGACGTCGCGAGCGCTG < 41bp 0.511359747978264 0.725633375169141 NA NA prediction 0.428547254381755 Functional Gain - C9orf47 ENSG00000186354 CDS Human protein_coding chr9:91606476 chr9:91606475 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_27051 0 0 0 0 1 C9orf47 chr9:91606385 3'AG 91606385 Downstream 91bp 24616 chr17 18135847 18135847 1 + G A GBM 18135848 + 18135828 18135868 41 GAGTTCACAGGCCTGCACCGGGATGCAGCCACTGTCACACA GAGTTCACAGGCCTGCACCAGGATGCAGCCACTGTCACACA < 41bp 0.532671367211182 0.746943093836167 NA NA prediction 0.428543453249971 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18135848 chr17:18135847 nonsynonymous SNV 0.080 1 20 hm7G_associated_SNPs_27053 0 0 0 0 2 LLGL1 chr17:18135809 3'AG 18135809 Downstream 39bp 24617 chr17 18135847 18135847 1 + G A GBM 18135848 + 18135828 18135868 41 GAGTTCACAGGCCTGCACCGGGATGCAGCCACTGTCACACA GAGTTCACAGGCCTGCACCAGGATGCAGCCACTGTCACACA < 41bp 0.532671367211182 0.746943093836167 NA NA prediction 0.428543453249971 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18135848 chr17:18135847 nonsynonymous SNV 0.080 1 20 hm7G_associated_SNPs_27053 0 0 0 0 2 LLGL1 chr17:18135890 5'GT 18135890 Upstream 44bp 24618 chr16 58076195 58076195 1 + G A CESC 58076196 + 58076176 58076216 41 CAACTATCCCATGCCCATCGGGCACTTCTGGCGTGGTCTGC CAACTATCCCATGCCCATCAGGCACTTCTGGCGTGGTCTGC < 41bp 0.527370741062313 0.741634590654345 NA NA prediction 0.428527699184065 Functional Gain - MMP15 ENSG00000102996 CDS Human protein_coding chr16:58076196 chr16:58076195 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_27057 0 0 1 0 2 MMP15 chr16:58076135 3'AG 58076135 Downstream 61bp 24619 chr16 58076195 58076195 1 + G A CESC 58076196 + 58076176 58076216 41 CAACTATCCCATGCCCATCGGGCACTTCTGGCGTGGTCTGC CAACTATCCCATGCCCATCAGGCACTTCTGGCGTGGTCTGC < 41bp 0.527370741062313 0.741634590654345 NA NA prediction 0.428527699184065 Functional Gain - MMP15 ENSG00000102996 CDS Human protein_coding chr16:58076196 chr16:58076195 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_27057 0 0 1 0 2 MMP15 chr16:58076273 5'GT 58076273 Upstream 79bp 24620 chr4 110452656 110452656 1 + G T LUAD 110452657 + 110452637 110452677 41 ATTCATCCCAACTTATACAGGATAGACAGATTGACAGATGA ATTCATCCCAACTTATACATGATAGACAGATTGACAGATGA < 41bp 0.390700572194503 0.71425765887998 NA NA prediction 0.428515317759959 Functional Gain - SEC24B ENSG00000138802 CDS Human protein_coding chr4:110452657 chr4:110452656 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_27058 0 0 1 0 1 SEC24B chr4:110452678 5'GT 110452678 Upstream 23bp 24621 chr1 200008808 200008808 1 + C T SKCM 200008809 + 200008789 200008829 41 CTGGGCTTCCGGACCGACACGGATCCCCCATCCCCGCCCGC CTGGGCTTCCGGACCGACATGGATCCCCCATCCCCGCCCGC < 41bp 0.50433071421864 0.718576639912181 NA NA prediction 0.428491851387082 Functional Gain - NR5A2 ENSG00000116833 CDS Human protein_coding chr1:200008809 chr1:200008808 synonymous SNV . 0 20 hm7G_associated_SNPs_27061 0 0 0 0 1 NR5A2 chr1:200008786 3'AG 200008786 Downstream 23bp 24622 chr5 125813449 125813449 1 + C T DLBC 125813450 + 125813430 125813470 41 CTGCTCTTCTAGTGCCAAACGCCCTGATCATAGCAACAGTC CTGCTCTTCTAGTGCCAAATGCCCTGATCATAGCAACAGTC < 41bp 0.502233951845777 0.716475801131597 NA NA prediction 0.428483698571639 Functional Gain - GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125813450 chr5:125813449 synonymous SNV . 0 20 hm7G_associated_SNPs_27063 0 0 0 1 1 GRAMD2B chr5:125813384 3'AG 125813384 Downstream 66bp 24623 chr20 1277815 1277815 1 + G A UCEC 1277816 + 1277796 1277836 41 TCTCCACCTGTGAGCGTGCGGGATGCCTACGGCACCTCTTC TCTCCACCTGTGAGCGTGCAGGATGCCTACGGCACCTCTTC < 41bp 0.535773420446423 0.750007978915737 NA NA prediction 0.428469116938629 Functional Gain - SNPH ENSG00000101298 CDS Human protein_coding chr20:1277816 chr20:1277815 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_27064 0 0 0 0 2 SNPH chr20:1277789 3'AG 1277789 Downstream 27bp 24624 chr20 1277815 1277815 1 + G A UCEC 1277816 + 1277796 1277836 41 TCTCCACCTGTGAGCGTGCGGGATGCCTACGGCACCTCTTC TCTCCACCTGTGAGCGTGCAGGATGCCTACGGCACCTCTTC < 41bp 0.535773420446423 0.750007978915737 NA NA prediction 0.428469116938629 Functional Gain - SNPH ENSG00000101298 CDS Human protein_coding chr20:1277816 chr20:1277815 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_27064 0 0 0 0 2 SNPH chr20:1277896 5'GT 1277896 Upstream 82bp 24625 chr1 110768696 110768696 1 + G A PRAD 110768697 + 110768677 110768717 41 CCGACCCCCGAGGAGCGCCGGGCCCTGCGACGCTCCACCAC CCGACCCCCGAGGAGCGCCAGGCCCTGCGACGCTCCACCAC < 41bp 0.539639614398304 0.753867853320759 NA NA prediction 0.42845647784491 Functional Gain - KCNC4 ENSG00000116396 CDS Human protein_coding chr1:110768697 chr1:110768696 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_27067 0 0 0 0 1 KCNC4 chr1:110768597 3'AG 110768597 Downstream 100bp 24626 chr17 38610218 38610218 1 + G A LIHC 38610219 + 38610199 38610239 41 GCGAGCTGCACCGGGCGCTGGAGCGGCTGGCCGCTTCACAG GCGAGCTGCACCGGGCGCTAGAGCGGCTGGCCGCTTCACAG < 41bp 0.514091897027865 0.728318030400314 NA NA prediction 0.428452266744899 Functional Gain - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610219 chr17:38610218 synonymous SNV . 0 20 hm7G_associated_SNPs_27068 0 0 1 0 2 IGFBP4 chr17:38610180 3'AG 38610180 Downstream 39bp 24627 chr17 38610218 38610218 1 + G A LIHC 38610219 + 38610199 38610239 41 GCGAGCTGCACCGGGCGCTGGAGCGGCTGGCCGCTTCACAG GCGAGCTGCACCGGGCGCTAGAGCGGCTGGCCGCTTCACAG < 41bp 0.514091897027865 0.728318030400314 NA NA prediction 0.428452266744899 Functional Gain - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610219 chr17:38610218 synonymous SNV . 0 20 hm7G_associated_SNPs_27068 0 0 1 0 2 IGFBP4 chr17:38610314 5'GT 38610314 Upstream 97bp 24628 chr1 154242678 154242678 1 + G A LUAD 154242679 + 154242659 154242699 41 CTCCCATTCCCCTGCAGACGGGCAGCGGGCAACGTAGCCAG CTCCCATTCCCCTGCAGACAGGCAGCGGGCAACGTAGCCAG < 41bp 0.498769862407869 0.714223951135439 NA NA prediction 0.428447902270878 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154242679 chr1:154242678 synonymous SNV . 0 20 hm7G_associated_SNPs_27069 0 0 1 0 1 UBAP2L chr1:154242676 3'AG 154242676 Downstream 3bp 24629 chr20 36977970 36977970 1 + G A rs1739654 36977971 + 36977951 36977991 41 CGGCCCAGGAGGGGCTATTGGCTCTGCAGAGTGAGCTGCTC CGGCCCAGGAGGGGCTATTAGCTCTGCAGAGTGAGCTGCTC < 41bp 0.554802988193123 0.769020596122138 NA NA prediction 0.428435215858029 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36977971 chr20:36977970 synonymous SNV . 0 20 hm7G_associated_SNPs_27070 0 1 0 0 2 LBP chr20:36977951 3'AG 36977951 Downstream 20bp 24630 chr20 36977970 36977970 1 + G A rs1739654 36977971 + 36977951 36977991 41 CGGCCCAGGAGGGGCTATTGGCTCTGCAGAGTGAGCTGCTC CGGCCCAGGAGGGGCTATTAGCTCTGCAGAGTGAGCTGCTC < 41bp 0.554802988193123 0.769020596122138 NA NA prediction 0.428435215858029 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36977971 chr20:36977970 synonymous SNV . 0 20 hm7G_associated_SNPs_27070 0 1 0 0 2 LBP chr20:36978065 5'GT 36978065 Upstream 96bp 24631 chr19 45287532 45287532 1 + G A UCEC 45287533 + 45287513 45287553 41 CCCTCCAGTTACATCTTCCGGCCCAGCTGTACTCGCCTGGG CCCTCCAGTTACATCTTCCAGCCCAGCTGTACTCGCCTGGG < 41bp 0.489337955304577 0.714216074222197 NA NA prediction 0.428432148444394 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45287533 chr19:45287532 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_27071 0 0 0 0 1 CBLC chr19:45287521 3'AG 45287521 Downstream 12bp 24632 chr11 64055814 64055814 1 + G A STAD 64055815 + 64055795 64055835 41 CCCCTGCCTTCCCACAGGCGGACCTGGTGAATGACCTGGGG CCCCTGCCTTCCCACAGGCAGACCTGGTGAATGACCTGGGG < 41bp 0.498084592695155 0.714211804514876 NA NA prediction 0.428423609029753 Functional Gain - GPR137 ENSG00000173264 CDS Human protein_coding chr11:64055815 chr11:64055814 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27072 0 0 1 0 1 GPR137 chr11:64055812 3'AG 64055812 Downstream 3bp 24633 chr18 56601783 56601783 1 + C T KIRC 56601784 + 56601764 56601804 41 TGTGGGGCCATCTGCAGGTCGGTGCACTTCCAGACCCACGT TGTGGGGCCATCTGCAGGTTGGTGCACTTCCAGACCCACGT < 41bp 0.51213142678571 0.726341378601779 NA NA prediction 0.428419903632138 Functional Gain - ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56601784 chr18:56601783 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27073 0 0 0 0 1 ZNF532 chr18:56601846 5'GT 56601846 Upstream 64bp 24634 chr1 48708225 48708225 1 + G T LUSC 48708226 + 48708206 48708246 41 GATATCCGAGAGGCCAGCCGGGGAGTGCCCTGCAGGAGGTG GATATCCGAGAGGCCAGCCTGGGAGTGCCCTGCAGGAGGTG < 41bp 0.366360915046725 0.714204738067333 NA NA prediction 0.428409476134665 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48708226 chr1:48708225 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_27074 0 0 1 0 2 SLC5A9 chr1:48708129 3'AG 48708129 Downstream 97bp 24635 chr1 48708225 48708225 1 + G T LUSC 48708226 + 48708206 48708246 41 GATATCCGAGAGGCCAGCCGGGGAGTGCCCTGCAGGAGGTG GATATCCGAGAGGCCAGCCTGGGAGTGCCCTGCAGGAGGTG < 41bp 0.366360915046725 0.714204738067333 NA NA prediction 0.428409476134665 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48708226 chr1:48708225 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_27074 0 0 1 0 2 SLC5A9 chr1:48708288 5'GT 48708288 Upstream 64bp 24636 chr9 82333706 82333706 1 + C T UCEC 82333707 + 82333687 82333727 41 TTCCACCCGACGCCCTCATCGGACCTGGAATCCCCCGGCAT TTCCACCCGACGCCCTCATTGGACCTGGAATCCCCCGGCAT < 41bp 0.507288615074975 0.72148481445133 NA NA prediction 0.428392398752709 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82333707 chr9:82333706 synonymous SNV . 0 20 hm7G_associated_SNPs_27076 0 0 1 0 1 TLE4 chr9:82333637 3'AG 82333637 Downstream 70bp 24637 chr3 183435509 183435509 1 + G T UCEC 183435510 + 183435490 183435530 41 CTCTTGAAATGAAGAATAAGGAACATGAAATTGAAGTCATT CTCTTGAAATGAAGAATAATGAACATGAAATTGAAGTCATT < 41bp 0.391229506691863 0.714193734159225 NA NA prediction 0.428387468318451 Functional Gain - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435510 chr3:183435509 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27078 0 0 1 0 2 YEATS2 chr3:183435439 3'AG 183435439 Downstream 71bp 24638 chr3 183435509 183435509 1 + G T UCEC 183435510 + 183435490 183435530 41 CTCTTGAAATGAAGAATAAGGAACATGAAATTGAAGTCATT CTCTTGAAATGAAGAATAATGAACATGAAATTGAAGTCATT < 41bp 0.391229506691863 0.714193734159225 NA NA prediction 0.428387468318451 Functional Gain - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183435510 chr3:183435509 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27078 0 0 1 0 2 YEATS2 chr3:183435536 5'GT 183435536 Upstream 28bp 24639 chr1 79094666 79094666 1 + G T LUAD 79094667 + 79094647 79094687 41 AACCTAGACGACATAAAGAGGATAATTAAAGCCAGAGAGTA AACCTAGACGACATAAAGATGATAATTAAAGCCAGAGAGTA < 41bp 0.40382847045409 0.714189789337394 NA NA prediction 0.428379578674787 Functional Gain - IFI44L ENSG00000137959 CDS Human protein_coding chr1:79094667 chr1:79094666 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_27079 0 0 0 0 1 IFI44L chr1:79094636 3'AG 79094636 Downstream 31bp 24640 chr1 40424484 40424484 1 + C T COAD 40424485 + 40424465 40424505 41 CCCCTGGACCTGCCTGGGTCGCCTTATGCCCTGGTGAGTAG CCCCTGGACCTGCCTGGGTTGCCTTATGCCCTGGTGAGTAG < 41bp 0.509765831657685 0.723952038792699 NA NA prediction 0.428372414270028 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40424485 chr1:40424484 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_27081 0 0 0 0 1 MFSD2A chr1:40424497 5'GT 40424497 Upstream 14bp 24641 chr19 15164766 15164766 1 + G T KIRC 15164767 + 15164747 15164787 41 CATCATACAGGCCTGTCGAGGAGGTGGGGACAGATCCAAGA CATCATACAGGCCTGTCGATGAGGTGGGGACAGATCCAAGA < 41bp 0.679691818111679 0.893877258188578 NA NA prediction 0.428370880153798 Functional Gain - CASP14 ENSG00000105141 CDS Human protein_coding chr19:15164767 chr19:15164766 stopgain 1.000 1 20 hm7G_associated_SNPs_27082 0 0 0 0 1 CASP14 chr19:15164769 5'GT 15164769 Upstream 4bp 24642 chr9 35793058 35793058 1 + G A STAD 35793059 + 35793039 35793079 41 CAGGCCACCCACTTCATCCGGGCCAACGGGCGCAGTGAGTG CAGGCCACCCACTTCATCCAGGCCAACGGGCGCAGTGAGTG < 41bp 0.526780998380173 0.740965751990962 NA NA prediction 0.428369507221578 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35793059 chr9:35793058 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_27083 0 0 0 0 1 NPR2 chr9:35793072 5'GT 35793072 Upstream 15bp 24643 chr16 31485032 31485032 1 + G A COAD 31485033 + 31485013 31485053 41 GGGAGTCTTCAGGAGCCTCGGGGGACAAGGACCACCTGTAC GGGAGTCTTCAGGAGCCTCAGGGGACAAGGACCACCTGTAC < 41bp 0.531220375263428 0.745400234202565 NA NA prediction 0.428359717878274 Functional Gain - TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31485033 chr16:31485032 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27084 0 0 0 0 2 TGFB1I1 chr16:31485003 3'AG 31485003 Downstream 30bp 24644 chr16 31485032 31485032 1 + G A COAD 31485033 + 31485013 31485053 41 GGGAGTCTTCAGGAGCCTCGGGGGACAAGGACCACCTGTAC GGGAGTCTTCAGGAGCCTCAGGGGACAAGGACCACCTGTAC < 41bp 0.531220375263428 0.745400234202565 NA NA prediction 0.428359717878274 Functional Gain - TGFB1I1 ENSG00000140682 CDS Human protein_coding chr16:31485033 chr16:31485032 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27084 0 0 0 0 2 TGFB1I1 chr16:31485055 5'GT 31485055 Upstream 24bp 24645 chr11 67799650 67799650 1 + G A LUSC 67799651 + 67799631 67799671 41 ACCACGCCTATGCTGCTGCGGGCCCTGGCCCAGGCTGCACG ACCACGCCTATGCTGCTGCAGGCCCTGGCCCAGGCTGCACG < 41bp 0.540434287246509 0.754609250033021 NA NA prediction 0.428349925573025 Functional Gain - NDUFS8 ENSG00000110717 CDS Human protein_coding chr11:67799651 chr11:67799650 nonsynonymous SNV 0.675 4 20 hm7G_associated_SNPs_27087 0 0 1 0 2 NDUFS8 chr11:67799619 3'AG 67799619 Downstream 32bp 24646 chr11 67799650 67799650 1 + G A LUSC 67799651 + 67799631 67799671 41 ACCACGCCTATGCTGCTGCGGGCCCTGGCCCAGGCTGCACG ACCACGCCTATGCTGCTGCAGGCCCTGGCCCAGGCTGCACG < 41bp 0.540434287246509 0.754609250033021 NA NA prediction 0.428349925573025 Functional Gain - NDUFS8 ENSG00000110717 CDS Human protein_coding chr11:67799651 chr11:67799650 nonsynonymous SNV 0.675 4 20 hm7G_associated_SNPs_27087 0 0 1 0 2 NDUFS8 chr11:67799676 5'GT 67799676 Upstream 27bp 24647 chr3 37042530 37042530 1 + G T LUAD 37042531 + 37042511 37042551 41 AGCCAGTATTTCTACCTATGGCTTTCGAGGTGAGGTAAGCT AGCCAGTATTTCTACCTATTGCTTTCGAGGTGAGGTAAGCT < 41bp 0.657640821382905 0.871812574895614 NA NA prediction 0.428343507025419 Functional Gain - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37042531 chr3:37042530 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27091 0 0 1 0 3 MLH1 chr3:37042446 3'AG 37042446 Downstream 85bp 24648 chr3 37042530 37042530 1 + G T LUAD 37042531 + 37042511 37042551 41 AGCCAGTATTTCTACCTATGGCTTTCGAGGTGAGGTAAGCT AGCCAGTATTTCTACCTATTGCTTTCGAGGTGAGGTAAGCT < 41bp 0.657640821382905 0.871812574895614 NA NA prediction 0.428343507025419 Functional Gain - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37042531 chr3:37042530 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27091 0 0 1 0 3 MLH1 chr3:37042539 5'GT 37042539 Upstream 10bp 24649 chr3 37042530 37042530 1 + G T LUAD 37042531 + 37042511 37042551 41 AGCCAGTATTTCTACCTATGGCTTTCGAGGTGAGGTAAGCT AGCCAGTATTTCTACCTATTGCTTTCGAGGTGAGGTAAGCT < 41bp 0.657640821382905 0.871812574895614 NA NA prediction 0.428343507025419 Functional Gain - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37042531 chr3:37042530 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27091 0 0 1 0 3 MLH1 chr3:37042544 5'GT 37042544 Upstream 15bp 24650 chr3 189586431 189586431 1 + G T BLCA 189586432 + 189586412 189586452 41 GCTTGCCCAGGAAGAGACAGGAAGGCGGATGAAGATAGCAT GCTTGCCCAGGAAGAGACATGAAGGCGGATGAAGATAGCAT < 41bp 0.683730515418634 0.897898661046089 NA NA prediction 0.428336291254909 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189586432 chr3:189586431 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_27092 0 0 0 0 3 TP63 chr3:189586369 3'AG 189586369 Downstream 63bp 24651 chr3 189586431 189586431 1 + G T BLCA 189586432 + 189586412 189586452 41 GCTTGCCCAGGAAGAGACAGGAAGGCGGATGAAGATAGCAT GCTTGCCCAGGAAGAGACATGAAGGCGGATGAAGATAGCAT < 41bp 0.683730515418634 0.897898661046089 NA NA prediction 0.428336291254909 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189586432 chr3:189586431 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_27092 0 0 0 0 3 TP63 chr3:189586493 5'GT 189586493 Upstream 63bp 24652 chr3 189586431 189586431 1 + G T BLCA 189586432 + 189586412 189586452 41 GCTTGCCCAGGAAGAGACAGGAAGGCGGATGAAGATAGCAT GCTTGCCCAGGAAGAGACATGAAGGCGGATGAAGATAGCAT < 41bp 0.683730515418634 0.897898661046089 NA NA prediction 0.428336291254909 Functional Gain - TP63 ENSG00000073282 CDS Human protein_coding chr3:189586432 chr3:189586431 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_27092 0 0 0 0 3 TP63 chr3:189586505 5'GT 189586505 Upstream 75bp 24653 chr10 45478023 45478023 1 + C T UCEC 45478024 + 45478004 45478044 41 CATTGCCTGGGGGCTGAGGCGGCCCATCCGGCTGCAGATGC CATTGCCTGGGGGCTGAGGTGGCCCATCCGGCTGCAGATGC < 41bp 0.528134785433266 0.742302100877756 NA NA prediction 0.428334630888979 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45478024 chr10:45478023 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_27093 0 0 1 0 1 RASSF4 chr10:45478111 5'GT 45478111 Upstream 89bp 24654 chr1 46494576 46494576 1 + C T OV 46494577 + 46494557 46494597 41 CCTTTTTTTGGAGATACTCCGGAGGAGCTCTTTGGGCAGGT CCTTTTTTTGGAGATACTCTGGAGGAGCTCTTTGGGCAGGT < 41bp 0.511067191829818 0.725233271487644 NA NA prediction 0.428332159315652 Functional Gain - MAST2 ENSG00000086015 CDS Human protein_coding chr1:46494577 chr1:46494576 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27094 0 0 1 0 1 MAST2 chr1:46494605 5'GT 46494605 Upstream 30bp 24655 chrX 118123421 118123421 1 + G T STAD 118123422 + 118123402 118123442 41 AGGAGGAAGCAGCAGCCAGGGGAGATGGCAGCAGTCTGATG AGGAGGAAGCAGCAGCCAGTGGAGATGGCAGCAGTCTGATG < 41bp 0.36500871064567 0.714165157940991 NA NA prediction 0.428330315881981 Functional Gain - LONRF3 ENSG00000175556 CDS Human protein_coding chrX:118123422 chrX:118123421 nonsynonymous SNV 0.018 0 20 hm7G_associated_SNPs_27095 0 0 1 0 1 LONRF3 chrX:118123371 3'AG 118123371 Downstream 51bp 24656 chr17 63156704 63156704 1 + C T STAD 63156705 + 63156685 63156725 41 CAGCTGAAGATACCGATTACGGTAAATACTTCAGCCCCAAC CAGCTGAAGATACCGATTATGGTAAATACTTCAGCCCCAAC < 41bp 0.507561351717838 0.721725063097233 NA NA prediction 0.428327422758791 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63156705 chr17:63156704 synonymous SNV . 0 20 hm7G_associated_SNPs_27096 0 0 0 0 2 RGS9 chr17:63156654 3'AG 63156654 Downstream 51bp 24657 chr17 63156704 63156704 1 + C T STAD 63156705 + 63156685 63156725 41 CAGCTGAAGATACCGATTACGGTAAATACTTCAGCCCCAAC CAGCTGAAGATACCGATTATGGTAAATACTTCAGCCCCAAC < 41bp 0.507561351717838 0.721725063097233 NA NA prediction 0.428327422758791 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63156705 chr17:63156704 synonymous SNV . 0 20 hm7G_associated_SNPs_27096 0 0 0 0 2 RGS9 chr17:63156705 5'GT 63156705 Upstream 2bp 24658 chr19 1008879 1008879 1 + G A rs2285907 1008880 + 1008860 1008900 41 TCCACCGCGCCCTCAACACGGAGCCACCAGAGGGGTCGAAG TCCACCGCGCCCTCAACACAGAGCCACCAGAGGGGTCGAAG < 41bp 0.530941133487309 0.745087311356059 NA NA prediction 0.428292355737501 Functional Gain - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1008880 chr19:1008879 synonymous SNV . 0 20 hm7G_associated_SNPs_27100 0 0 0 0 2 GRIN3B chr19:1008856 3'AG 1008856 Downstream 24bp 24659 chr19 1008879 1008879 1 + G A rs2285907 1008880 + 1008860 1008900 41 TCCACCGCGCCCTCAACACGGAGCCACCAGAGGGGTCGAAG TCCACCGCGCCCTCAACACAGAGCCACCAGAGGGGTCGAAG < 41bp 0.530941133487309 0.745087311356059 NA NA prediction 0.428292355737501 Functional Gain - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1008880 chr19:1008879 synonymous SNV . 0 20 hm7G_associated_SNPs_27100 0 0 0 0 2 GRIN3B chr19:1008926 5'GT 1008926 Upstream 48bp 24660 chr11 134212785 134212785 1 + G T LGG 134212786 + 134212766 134212806 41 CACTATTTCCGTGTGCCCAGGGAGTACTGGAGGGACCGCCT CACTATTTCCGTGTGCCCATGGAGTACTGGAGGGACCGCCT < 41bp 0.686050667426161 0.900191482025829 NA NA prediction 0.428281629199337 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134212786 chr11:134212785 nonsynonymous SNV 0.965 2 20 hm7G_associated_SNPs_27102 0 0 0 0 1 GLB1L2 chr11:134212845 5'GT 134212845 Upstream 61bp 24661 chr17 78172329 78172329 1 + G A UCEC 78172330 + 78172310 78172350 41 ACGGGCATCTTCATCCACCGGGTCACCCCGGGCTCGGCGGC ACGGGCATCTTCATCCACCAGGTCACCCCGGGCTCGGCGGC < 41bp 0.488172943405489 0.714139030391717 NA NA prediction 0.428278060783434 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172330 chr17:78172329 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_27103 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 62bp 24662 chr19 855770 855770 1 + G A SKCM 855771 + 855751 855791 41 ACGTCTGCACTCTCGTGAGGGGCCGGCAGGCCGGCGTCTGT ACGTCTGCACTCTCGTGAGAGGCCGGCAGGCCGGCGTCTGT < 41bp 0.493182478940543 0.714133158090023 NA NA prediction 0.428266316180046 Functional Gain - ELANE ENSG00000197561 CDS Human protein_coding chr19:855771 chr19:855770 synonymous SNV . 0 20 hm7G_associated_SNPs_27107 0 0 0 0 1 ELANE chr19:855794 5'GT 855794 Upstream 25bp 24663 chr5 43246079 43246079 1 + G T READ 43246080 + 43246060 43246100 41 GGTGAGGGAGATCACGCTGGGGAAACGGATAGGCTTCTACC GGTGAGGGAGATCACGCTGTGGAAACGGATAGGCTTCTACC < 41bp 0.68709092160845 0.901223755194914 NA NA prediction 0.428265667172927 Functional Gain - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43246080 chr5:43246079 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_27108 0 0 0 0 1 NIM1K chr5:43246169 5'GT 43246169 Upstream 91bp 24664 chr2 25360283 25360283 1 + C T COAD 25360284 + 25360264 25360304 41 GTGCAGAAACACTACGAGGCGCTCTATGGCTTGCTGGCCCT GTGCAGAAACACTACGAGGTGCTCTATGGCTTGCTGGCCCT < 41bp 0.502917389941277 0.717044675539542 NA NA prediction 0.42825457119653 Functional Gain - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25360284 chr2:25360283 nonsynonymous SNV 0.950 2 20 hm7G_associated_SNPs_27111 0 0 0 0 2 EFR3B chr2:25360210 3'AG 25360210 Downstream 74bp 24665 chr2 25360283 25360283 1 + C T COAD 25360284 + 25360264 25360304 41 GTGCAGAAACACTACGAGGCGCTCTATGGCTTGCTGGCCCT GTGCAGAAACACTACGAGGTGCTCTATGGCTTGCTGGCCCT < 41bp 0.502917389941277 0.717044675539542 NA NA prediction 0.42825457119653 Functional Gain - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25360284 chr2:25360283 nonsynonymous SNV 0.950 2 20 hm7G_associated_SNPs_27111 0 0 0 0 2 EFR3B chr2:25360371 5'GT 25360371 Upstream 89bp 24666 chr17 4647966 4647966 1 + G A STAD 4647967 + 4647947 4647987 41 GGTTCCGGCATATCAGCACGGCCCAGCTCTGGCACTAAGGA GGTTCCGGCATATCAGCACAGCCCAGCTCTGGCACTAAGGA < 41bp 0.537931007289156 0.752055989385957 NA NA prediction 0.428249964193602 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4647967 chr17:4647966 nonsynonymous SNV 0.220 3 20 hm7G_associated_SNPs_27113 0 0 0 0 1 ZMYND15 chr17:4647920 3'AG 4647920 Downstream 47bp 24667 chr2 27016122 27016122 1 + G T LUAD 27016123 + 27016103 27016143 41 CAACTGGCCCGGAGGATCCGGGGCCTTGAGGAGGGACTCGG CAACTGGCCCGGAGGATCCTGGGCCTTGAGGAGGGACTCGG < 41bp 0.690314675830205 0.904429944214744 NA NA prediction 0.428230536769079 Functional Gain - CENPA ENSG00000115163 CDS Human protein_coding chr2:27016123 chr2:27016122 nonsynonymous SNV 0.841 4 20 hm7G_associated_SNPs_27114 0 0 1 1 1 CENPA chr2:27016194 5'GT 27016194 Upstream 73bp 24668 chr10 72468396 72468396 1 + G A STAD 72468397 + 72468377 72468417 41 GCCTGGTGGGGGACCAGCTGGGCGACACAGAGCGGAAGCGG GCCTGGTGGGGGACCAGCTAGGCGACACAGAGCGGAAGCGG < 41bp 0.562812320603593 0.776926687032231 NA NA prediction 0.428228732857276 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72468397 chr10:72468396 synonymous SNV . 0 20 hm7G_associated_SNPs_27115 0 0 1 0 1 ADAMTS14 chr10:72468344 3'AG 72468344 Downstream 53bp 24669 chr10 7860740 7860740 1 + G T LUAD 7860741 + 7860721 7860761 41 ATCTGCCAGGCGCTGGGCTGGGACTCGGTGCAGCTCAGCGC ATCTGCCAGGCGCTGGGCTTGGACTCGGTGCAGCTCAGCGC < 41bp 0.686219043535522 0.900332124482633 NA NA prediction 0.428226161894222 Functional Gain - TAF3 ENSG00000165632 CDS Human protein_coding chr10:7860741 chr10:7860740 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_27116 0 0 1 0 1 TAF3 chr10:7860838 5'GT 7860838 Upstream 99bp 24670 chr12 19653128 19653128 1 + G T PRAD 19653129 + 19653109 19653149 41 ATATAGAAAGTTTAGGGAAGGGACACAGTGTTGTTTTTCAT ATATAGAAAGTTTAGGGAATGGACACAGTGTTGTTTTTCAT < 41bp 0.667822398068699 0.881916315420301 NA NA prediction 0.428187834703204 Functional Gain - AEBP2 ENSG00000139154 CDS Human protein_coding chr12:19653129 chr12:19653128 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_27122 0 0 1 0 2 AEBP2 chr12:19653031 3'AG 19653031 Downstream 98bp 24671 chr12 19653128 19653128 1 + G T PRAD 19653129 + 19653109 19653149 41 ATATAGAAAGTTTAGGGAAGGGACACAGTGTTGTTTTTCAT ATATAGAAAGTTTAGGGAATGGACACAGTGTTGTTTTTCAT < 41bp 0.667822398068699 0.881916315420301 NA NA prediction 0.428187834703204 Functional Gain - AEBP2 ENSG00000139154 CDS Human protein_coding chr12:19653129 chr12:19653128 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_27122 0 0 1 0 2 AEBP2 chr12:19653155 5'GT 19653155 Upstream 28bp 24672 chr10 115529545 115529545 1 + G T UCEC 115529546 + 115529526 115529566 41 CCTTTTTTTGTGAGCAGGAGGAACTCTCATTGGGTAATAAA CCTTTTTTTGTGAGCAGGATGAACTCTCATTGGGTAATAAA < 41bp 0.385932694497307 0.714087268144799 NA NA prediction 0.428174536289598 Functional Gain - PLEKHS1 ENSG00000148735 CDS Human protein_coding chr10:115529546 chr10:115529545 nonsynonymous SNV 0.724 1 20 hm7G_associated_SNPs_27126 0 0 0 0 1 PLEKHS1 chr10:115529543 3'AG 115529543 Downstream 3bp 24673 chr7 148454127 148454127 1 + G T LUAD 148454128 + 148454108 148454148 41 AAATTCTACACTCAACAATGGGAAGATTATCGATTTTCAAG AAATTCTACACTCAACAATTGGAAGATTATCGATTTTCAAG < 41bp 0.373629150798159 0.714086793059384 NA NA prediction 0.428173586118769 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148454128 chr7:148454127 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_27127 0 0 1 0 1 CUL1 chr7:148454075 3'AG 148454075 Downstream 53bp 24674 chr19 36033244 36033244 1 + G A SKCM 36033245 + 36033225 36033265 41 GAGCCCAAACAGATCCCCTGGAGGGCTGTCGGGAGCCCCTA GAGCCCAAACAGATCCCCTAGAGGGCTGTCGGGAGCCCCTA < 41bp 0.526959111956755 0.741043790114762 NA NA prediction 0.428169356316014 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033245 chr19:36033244 stopgain 0.743 1 20 hm7G_associated_SNPs_27129 0 0 0 0 2 GAPDHS chr19:36033221 3'AG 36033221 Downstream 24bp 24675 chr19 36033244 36033244 1 + G A SKCM 36033245 + 36033225 36033265 41 GAGCCCAAACAGATCCCCTGGAGGGCTGTCGGGAGCCCCTA GAGCCCAAACAGATCCCCTAGAGGGCTGTCGGGAGCCCCTA < 41bp 0.526959111956755 0.741043790114762 NA NA prediction 0.428169356316014 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033245 chr19:36033244 stopgain 0.743 1 20 hm7G_associated_SNPs_27129 0 0 0 0 2 GAPDHS chr19:36033311 5'GT 36033311 Upstream 68bp 24676 chr9 100056344 100056344 1 + C T COAD 100056345 + 100056325 100056365 41 CGGCATGTGGCTGATTGCCCGCATCGACAGGACCATCATGC CGGCATGTGGCTGATTGCCTGCATCGACAGGACCATCATGC < 41bp 0.516241828889744 0.730325114603605 NA NA prediction 0.428166571427723 Functional Gain - LOC100499484;LOC100499484-C9ORF174 ENSG00000197816 CDS Human other chr9:100056345 chr9:100056344 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27130 0 0 0 0 1 LOC100499484;LOC100499484-C9ORF174 chr9:100056392 5'GT 100056392 Upstream 49bp 24677 chr12 122684832 122684832 1 + G A GBM 122684833 + 122684813 122684853 41 GGGACCTGGTCCCACTGAAGGCCTTCCTGCTGGCGGGGACC GGGACCTGGTCCCACTGAAAGCCTTCCTGCTGGCGGGGACC < 41bp 0.560413257396611 0.774495828564302 NA NA prediction 0.428165142335381 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122684833 chr12:122684832 synonymous SNV . 0 20 hm7G_associated_SNPs_27131 0 0 0 0 2 LRRC43 chr12:122684736 3'AG 122684736 Downstream 97bp 24678 chr12 122684832 122684832 1 + G A GBM 122684833 + 122684813 122684853 41 GGGACCTGGTCCCACTGAAGGCCTTCCTGCTGGCGGGGACC GGGACCTGGTCCCACTGAAAGCCTTCCTGCTGGCGGGGACC < 41bp 0.560413257396611 0.774495828564302 NA NA prediction 0.428165142335381 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122684833 chr12:122684832 synonymous SNV . 0 20 hm7G_associated_SNPs_27131 0 0 0 0 2 LRRC43 chr12:122684877 5'GT 122684877 Upstream 46bp 24679 chr8 23112797 23112797 1 + C T BLCA 23112798 + 23112778 23112818 41 TATCGTCTGTATCAGAACTCGCCCCTCTCCTCCCACCCCGT TATCGTCTGTATCAGAACTTGCCCCTCTCCTCCCACCCCGT < 41bp 0.505426373179115 0.719504383204984 NA NA prediction 0.428156020051739 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23112798 chr8:23112797 nonsynonymous SNV 0.911 3 20 hm7G_associated_SNPs_27132 0 0 1 1 1 CHMP7 chr8:23112760 3'AG 23112760 Downstream 38bp 24680 chr1 17682852 17682852 1 + G A HNSC 17682853 + 17682833 17682873 41 CCAGTGTTTCTGCCTCCAGGGCTTCCGGCTGCTCCTGGCCA CCAGTGTTTCTGCCTCCAGAGCTTCCGGCTGCTCCTGGCCA < 41bp 0.529668999221246 0.743745182259617 NA NA prediction 0.428152366076741 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17682853 chr1:17682852 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_27133 0 0 0 0 1 PADI4 chr1:17682852 3'AG 17682852 Downstream 1bp 24681 chr11 18460162 18460162 1 + G T LUAD 18460163 + 18460143 18460183 41 GATTCAGATAAGGAACACTGGAAAAATATCCATAAACAAGT GATTCAGATAAGGAACACTTGAAAAATATCCATAAACAAGT < 41bp 0.392538258235192 0.714073480404175 NA NA prediction 0.42814696080835 Functional Gain - LDHC ENSG00000166796 CDS Human protein_coding chr11:18460163 chr11:18460162 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27134 0 0 0 3 2 LDHC chr11:18460075 3'AG 18460075 Downstream 88bp 24682 chr11 18460162 18460162 1 + G T LUAD 18460163 + 18460143 18460183 41 GATTCAGATAAGGAACACTGGAAAAATATCCATAAACAAGT GATTCAGATAAGGAACACTTGAAAAATATCCATAAACAAGT < 41bp 0.392538258235192 0.714073480404175 NA NA prediction 0.42814696080835 Functional Gain - LDHC ENSG00000166796 CDS Human protein_coding chr11:18460163 chr11:18460162 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27134 0 0 0 3 2 LDHC chr11:18460192 5'GT 18460192 Upstream 31bp 24683 chr15 59384789 59384789 1 + G T LGG 59384790 + 59384770 59384810 41 GGACTGAGGAAGACACAGAGGAAAAATGTACTATCTGTTTG GGACTGAGGAAGACACAGATGAAAAATGTACTATCTGTTTG < 41bp 0.38690246288839 0.714071826181424 NA NA prediction 0.428143652362847 Functional Gain - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59384790 chr15:59384789 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27135 0 0 1 0 3 RNF111 chr15:59384712 3'AG 59384712 Downstream 78bp 24684 chr15 59384789 59384789 1 + G T LGG 59384790 + 59384770 59384810 41 GGACTGAGGAAGACACAGAGGAAAAATGTACTATCTGTTTG GGACTGAGGAAGACACAGATGAAAAATGTACTATCTGTTTG < 41bp 0.38690246288839 0.714071826181424 NA NA prediction 0.428143652362847 Functional Gain - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59384790 chr15:59384789 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27135 0 0 1 0 3 RNF111 chr15:59384736 3'AG 59384736 Downstream 54bp 24685 chr15 59384789 59384789 1 + G T LGG 59384790 + 59384770 59384810 41 GGACTGAGGAAGACACAGAGGAAAAATGTACTATCTGTTTG GGACTGAGGAAGACACAGATGAAAAATGTACTATCTGTTTG < 41bp 0.38690246288839 0.714071826181424 NA NA prediction 0.428143652362847 Functional Gain - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59384790 chr15:59384789 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27135 0 0 1 0 3 RNF111 chr15:59384839 5'GT 59384839 Upstream 51bp 24686 chr2 121106693 121106693 1 + G A COAD 121106694 + 121106674 121106714 41 GATGGCCTCGCCTCCTCCCGGGTCCGCCTATACTTCTTCAT GATGGCCTCGCCTCCTCCCAGGTCCGCCTATACTTCTTCAT < 41bp 0.531334561518455 0.745406012529719 NA NA prediction 0.428142902022528 Functional Gain - INHBB ENSG00000163083 CDS Human protein_coding chr2:121106694 chr2:121106693 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_27136 0 0 0 0 1 INHBB chr2:121106675 3'AG 121106675 Downstream 19bp 24687 chr9 140147601 140147601 1 + G T PAAD 140147602 + 140147582 140147622 41 CAGCCGCCTACCACGTGGAGGACTGCAACTCACGCTTCCCT CAGCCGCCTACCACGTGGATGACTGCAACTCACGCTTCCCT < 41bp 0.375653667121158 0.714071332740401 NA NA prediction 0.428142665480803 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140147602 chr9:140147601 stopgain 0.950 3 20 hm7G_associated_SNPs_27137 0 0 0 0 2 STPG3 chr9:140147551 3'AG 140147551 Downstream 51bp 24688 chr9 140147601 140147601 1 + G T PAAD 140147602 + 140147582 140147622 41 CAGCCGCCTACCACGTGGAGGACTGCAACTCACGCTTCCCT CAGCCGCCTACCACGTGGATGACTGCAACTCACGCTTCCCT < 41bp 0.375653667121158 0.714071332740401 NA NA prediction 0.428142665480803 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140147602 chr9:140147601 stopgain 0.950 3 20 hm7G_associated_SNPs_27137 0 0 0 0 2 STPG3 chr9:140147567 3'AG 140147567 Downstream 35bp 24689 chr10 90568090 90568090 1 + G T UCEC 90568091 + 90568071 90568111 41 ATCAAGGCTATCCCTGTGAGGAATATGAAGTCGCAACTGAA ATCAAGGCTATCCCTGTGATGAATATGAAGTCGCAACTGAA < 41bp 0.681848844732128 0.895917683018403 NA NA prediction 0.428137676572551 Functional Gain - LIPM ENSG00000173239 CDS Human protein_coding chr10:90568091 chr10:90568090 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27138 0 0 0 0 1 LIPM chr10:90568172 5'GT 90568172 Upstream 83bp 24690 chr22 47054121 47054121 1 + G A UCEC 47054122 + 47054102 47054142 41 TGCGAGAAGAAACCAACGCGGAGATGCTGCGGCAGGAGCTG TGCGAGAAGAAACCAACGCAGAGATGCTGCGGCAGGAGCTG < 41bp 0.490917328729308 0.714067028562023 NA NA prediction 0.428134057124046 Functional Gain - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47054122 chr22:47054121 synonymous SNV . 0 20 hm7G_associated_SNPs_27139 0 0 1 0 2 GRAMD4 chr22:47054084 3'AG 47054084 Downstream 38bp 24691 chr22 47054121 47054121 1 + G A UCEC 47054122 + 47054102 47054142 41 TGCGAGAAGAAACCAACGCGGAGATGCTGCGGCAGGAGCTG TGCGAGAAGAAACCAACGCAGAGATGCTGCGGCAGGAGCTG < 41bp 0.490917328729308 0.714067028562023 NA NA prediction 0.428134057124046 Functional Gain - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47054122 chr22:47054121 synonymous SNV . 0 20 hm7G_associated_SNPs_27139 0 0 1 0 2 GRAMD4 chr22:47054204 5'GT 47054204 Upstream 84bp 24692 chr1 206653396 206653396 1 + G T LUSC 206653397 + 206653377 206653417 41 GCCGGCTACCAGGCCCTGCGGCTGGCACGGGCCCTGCTGGA GCCGGCTACCAGGCCCTGCTGCTGGCACGGGCCCTGCTGGA < 41bp 0.699302673206432 0.913360682126098 NA NA prediction 0.428116017839331 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653397 chr1:206653396 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_27142 0 0 0 0 2 IKBKE chr1:206653365 3'AG 206653365 Downstream 32bp 24693 chr1 206653396 206653396 1 + G T LUSC 206653397 + 206653377 206653417 41 GCCGGCTACCAGGCCCTGCGGCTGGCACGGGCCCTGCTGGA GCCGGCTACCAGGCCCTGCTGCTGGCACGGGCCCTGCTGGA < 41bp 0.699302673206432 0.913360682126098 NA NA prediction 0.428116017839331 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653397 chr1:206653396 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_27142 0 0 0 0 2 IKBKE chr1:206653456 5'GT 206653456 Upstream 61bp 24694 chr1 110256125 110256125 1 + G T LUAD 110256126 + 110256106 110256146 41 CTGCCCTACTTGATTGATGGGGCTCACAAGATCACCCAGAG CTGCCCTACTTGATTGATGTGGCTCACAAGATCACCCAGAG < 41bp 0.377402735765383 0.714057780937311 NA NA prediction 0.428115561874622 Functional Gain - GSTM5 ENSG00000134201 CDS Human protein_coding chr1:110256126 chr1:110256125 nonsynonymous SNV 0.756 3 20 hm7G_associated_SNPs_27143 0 0 0 0 2 GSTM5 chr1:110256106 3'AG 110256106 Downstream 20bp 24695 chr1 110256125 110256125 1 + G T LUAD 110256126 + 110256106 110256146 41 CTGCCCTACTTGATTGATGGGGCTCACAAGATCACCCAGAG CTGCCCTACTTGATTGATGTGGCTCACAAGATCACCCAGAG < 41bp 0.377402735765383 0.714057780937311 NA NA prediction 0.428115561874622 Functional Gain - GSTM5 ENSG00000134201 CDS Human protein_coding chr1:110256126 chr1:110256125 nonsynonymous SNV 0.756 3 20 hm7G_associated_SNPs_27143 0 0 0 0 2 GSTM5 chr1:110256187 5'GT 110256187 Upstream 63bp 24696 chr17 79985962 79985962 1 + G A rs78172878 79985963 + 79985943 79985983 41 GGGAGCTCCTGGCCACAGCGGAGCAGGAGCAGCTGAGCCTG GGGAGCTCCTGGCCACAGCAGAGCAGGAGCAGCTGAGCCTG < 41bp 0.538345460507264 0.752398206455074 NA NA prediction 0.42810549189562 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79985963 chr17:79985962 synonymous SNV . 0 20 hm7G_associated_SNPs_27144 0 0 1 0 2 LRRC45 chr17:79985887 3'AG 79985887 Downstream 76bp 24697 chr17 79985962 79985962 1 + G A rs78172878 79985963 + 79985943 79985983 41 GGGAGCTCCTGGCCACAGCGGAGCAGGAGCAGCTGAGCCTG GGGAGCTCCTGGCCACAGCAGAGCAGGAGCAGCTGAGCCTG < 41bp 0.538345460507264 0.752398206455074 NA NA prediction 0.42810549189562 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79985963 chr17:79985962 synonymous SNV . 0 20 hm7G_associated_SNPs_27144 0 0 1 0 2 LRRC45 chr17:79986022 5'GT 79986022 Upstream 61bp 24698 chr17 45360794 45360794 1 + C T UCEC 45360795 + 45360775 45360815 41 ACTGTGCCCCAGAATCCATCGAGTTCCCAGTGAGTGAGGCC ACTGTGCCCCAGAATCCATTGAGTTCCCAGTGAGTGAGGCC < 41bp 0.520722928626014 0.734768838511879 NA NA prediction 0.42809181977173 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45360795 chr17:45360794 synonymous SNV . 0 20 hm7G_associated_SNPs_27146 0 0 0 0 1 ITGB3 chr17:45360720 3'AG 45360720 Downstream 75bp 24699 chr4 5800494 5800494 1 + G A rs2279252 5800495 + 5800475 5800515 41 AATGCAGCCACCAAGAGCCGGGCCAAGGACAGGGATGACTT AATGCAGCCACCAAGAGCCAGGCCAAGGACAGGGATGACTT < 41bp 0.519519736918696 0.733564508868462 NA NA prediction 0.428089543899532 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5800495 chr4:5800494 nonsynonymous SNV 0.926 0 20 hm7G_associated_SNPs_27147 3 0 1 0 1 EVC chr4:5800519 5'GT 5800519 Upstream 26bp 24700 chr5 176005434 176005434 1 + G A STAD 176005435 + 176005415 176005455 41 AACGGTGAGCTGCTGGACCGGGAGAGCCAGGCCGTGTACTA AACGGTGAGCTGCTGGACCAGGAGAGCCAGGCCGTGTACTA < 41bp 0.51448655893514 0.728530309289062 NA NA prediction 0.428087500707845 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176005435 chr5:176005434 nonsynonymous SNV 0.658 3 20 hm7G_associated_SNPs_27148 0 0 0 0 1 CDHR2 chr5:176005366 3'AG 176005366 Downstream 69bp 24701 chr18 63511110 63511110 1 + C T BLCA 63511111 + 63511091 63511131 41 AAGCTGCAAATAAAGATGCCGACCCTCGCTTTCTGAGCTTG AAGCTGCAAATAAAGATGCTGACCCTCGCTTTCTGAGCTTG < 41bp 0.495820499874338 0.714026901959114 NA NA prediction 0.428053803918229 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63511111 chr18:63511110 synonymous SNV . 0 20 hm7G_associated_SNPs_27150 0 0 0 0 1 CDH7 chr18:63511048 3'AG 63511048 Downstream 63bp 24702 chr11 46724274 46724274 1 + G T THCA 46724275 + 46724255 46724295 41 ACCTGTCATTAGGCCCATGGGGAGACGTGTGTGCCTGTGAG ACCTGTCATTAGGCCCATGTGGAGACGTGTGTGCCTGTGAG < 41bp 0.693350378439603 0.907368043197395 NA NA prediction 0.428035329515584 Functional Gain - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46724275 chr11:46724274 nonsynonymous SNV 0.143 0 20 hm7G_associated_SNPs_27151 0 0 0 0 2 ZNF408 chr11:46724254 3'AG 46724254 Downstream 21bp 24703 chr11 46724274 46724274 1 + G T THCA 46724275 + 46724255 46724295 41 ACCTGTCATTAGGCCCATGGGGAGACGTGTGTGCCTGTGAG ACCTGTCATTAGGCCCATGTGGAGACGTGTGTGCCTGTGAG < 41bp 0.693350378439603 0.907368043197395 NA NA prediction 0.428035329515584 Functional Gain - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46724275 chr11:46724274 nonsynonymous SNV 0.143 0 20 hm7G_associated_SNPs_27151 0 0 0 0 2 ZNF408 chr11:46724315 5'GT 46724315 Upstream 42bp 24704 chr10 26800723 26800723 1 + G T STAD 26800724 + 26800704 26800744 41 ACAGCACAAAGTCACTGATGGTGGATGAGCGGCAGCTGGCC ACAGCACAAAGTCACTGATTGTGGATGAGCGGCAGCTGGCC < 41bp 0.686885869536299 0.90089848772521 NA NA prediction 0.428025236377821 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26800724 chr10:26800723 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_27153 0 0 0 0 1 APBB1IP chr10:26800676 3'AG 26800676 Downstream 48bp 24705 chr17 73566554 73566554 1 + G A UCEC 73566555 + 73566535 73566575 41 CGGGTGTCCAGCCGGAAGCGGCACCCGGCTGGCCCCCCAGG CGGGTGTCCAGCCGGAAGCAGCACCCGGCTGGCCCCCCAGG < 41bp 0.550787118906933 0.764798491838096 NA NA prediction 0.428022745862326 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73566555 chr17:73566554 nonsynonymous SNV 0.222 0 20 hm7G_associated_SNPs_27154 0 0 1 0 1 LLGL2 chr17:73566579 5'GT 73566579 Upstream 26bp 24706 chr5 23509166 23509166 1 + G T UCEC 23509167 + 23509147 23509187 41 GCCCTGAAAAGTCCCAAGAGGAGAGCCCAGAAGAAGACACA GCCCTGAAAAGTCCCAAGATGAGAGCCCAGAAGAAGACACA < 41bp 0.386701754188374 0.714000924072729 NA NA prediction 0.428001848145457 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509167 chr5:23509166 nonsynonymous SNV 0.579 0 20 hm7G_associated_SNPs_27156 0 0 0 0 1 PRDM9 chr5:23509211 5'GT 23509211 Upstream 46bp 24707 chr10 95275184 95275184 1 + G T LUSC 95275185 + 95275165 95275205 41 CTGGAGAAAAATCAGCAGTGGCTCGTGTATGATCAGCAGCG CTGGAGAAAAATCAGCAGTTGCTCGTGTATGATCAGCAGCG < 41bp 0.687224052625928 0.901224135054185 NA NA prediction 0.428000164856515 Functional Gain - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95275185 chr10:95275184 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_27158 0 0 1 0 1 CEP55 chr10:95275162 3'AG 95275162 Downstream 23bp 24708 chr3 33406125 33406125 1 + G T rs17192791 33406126 + 33406106 33406146 41 CTTGATTAAAGGGTCGAGTGGTGGAAAATATCTCGAAGCGA CTTGATTAAAGGGTCGAGTTGTGGAAAATATCTCGAAGCGA < 41bp 0.446857647738086 0.713997905395422 NA NA prediction 0.427995810790844 Functional Gain - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33406126 chr3:33406125 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27159 0 0 1 1 1 FBXL2 chr3:33406211 5'GT 33406211 Upstream 87bp 24709 chr19 50783319 50783319 1 + C T ESCA 50783320 + 50783300 50783340 41 CTGGAGAATGTGTCTGGGGCGCTGAACGAGGCTGAGTCCAA CTGGAGAATGTGTCTGGGGTGCTGAACGAGGCTGAGTCCAA < 41bp 0.494815431051926 0.713996533183394 NA NA prediction 0.427993066366787 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50783320 chr19:50783319 nonsynonymous SNV 0.517 0 20 hm7G_associated_SNPs_27160 0 0 1 0 2 MYH14 chr19:50783294 3'AG 50783294 Downstream 26bp 24710 chr19 50783319 50783319 1 + C T ESCA 50783320 + 50783300 50783340 41 CTGGAGAATGTGTCTGGGGCGCTGAACGAGGCTGAGTCCAA CTGGAGAATGTGTCTGGGGTGCTGAACGAGGCTGAGTCCAA < 41bp 0.494815431051926 0.713996533183394 NA NA prediction 0.427993066366787 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50783320 chr19:50783319 nonsynonymous SNV 0.517 0 20 hm7G_associated_SNPs_27160 0 0 1 0 2 MYH14 chr19:50783398 5'GT 50783398 Upstream 80bp 24711 chr1 110019485 110019485 1 + C T SKCM 110019486 + 110019466 110019506 41 TGGGGGACTTCTCTGCACCCGCCGAGTTCTTCGTGACCCTT TGGGGGACTTCTCTGCACCTGCCGAGTTCTTCGTGACCCTT < 41bp 0.507376938626805 0.721366261671107 NA NA prediction 0.427978646088605 Functional Gain - SYPL2 ENSG00000143028 CDS Human protein_coding chr1:110019486 chr1:110019485 synonymous SNV . 0 20 hm7G_associated_SNPs_27162 0 0 0 0 1 SYPL2 chr1:110019398 3'AG 110019398 Downstream 88bp 24712 chr1 151512803 151512803 1 + G A rs80145888 151512804 + 151512784 151512824 41 CAGTTGGAGCCAGACAGCGGGGTGGACAAGTGGCGTGTGTG CAGTTGGAGCCAGACAGCGAGGTGGACAAGTGGCGTGTGTG < 41bp 0.52687493555304 0.740856671009411 NA NA prediction 0.427963470912742 Functional Gain - TUFT1 ENSG00000143367 UTR5 Human protein_coding chr1:151512804 chr1:151512803 . . 0 20 hm7G_associated_SNPs_27163 0 0 0 0 1 TUFT1 chr1:151512902 5'GT 151512902 Upstream 100bp 24713 chr16 88599614 88599614 1 + G A COAD 88599615 + 88599595 88599635 41 AAGGCCCCCTGGCCTCCGCGGACCTGGGCCTGGCGCCCACC AAGGCCCCCTGGCCTCCGCAGACCTGGGCCTGGCGCCCACC < 41bp 0.484189430326218 0.713981412634623 NA NA prediction 0.427962825269247 Functional Gain - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88599615 chr16:88599614 synonymous SNV . 0 20 hm7G_associated_SNPs_27164 0 0 1 0 1 ZFPM1 chr16:88599556 3'AG 88599556 Downstream 59bp 24714 chr16 84693368 84693368 1 + G T LUAD 84693369 + 84693349 84693389 41 GTATCTCAACTCCACAGGTGGCCTCCATGAACCAGCGCCGT GTATCTCAACTCCACAGGTTGCCTCCATGAACCAGCGCCGT < 41bp 0.692602644804409 0.906574779461435 NA NA prediction 0.427944269314052 Functional Gain - KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84693369 chr16:84693368 synonymous SNV . 0 20 hm7G_associated_SNPs_27165 0 0 1 0 1 KLHL36 chr16:84693366 3'AG 84693366 Downstream 3bp 24715 chr20 61594696 61594696 1 + C T rs201329081 61594697 + 61594677 61594717 41 CAACAGAGTCCCCTGGAGACGGCTCTTCCGGAAGCCTGCTG CAACAGAGTCCCCTGGAGATGGCTCTTCCGGAAGCCTGCTG < 41bp 0.504716200574372 0.718687032905241 NA NA prediction 0.427941664661738 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594697 chr20:61594696 nonsynonymous SNV 0.866 2 20 hm7G_associated_SNPs_27166 0 0 1 0 2 SLC17A9 chr20:61594625 3'AG 61594625 Downstream 72bp 24716 chr20 61594696 61594696 1 + C T rs201329081 61594697 + 61594677 61594717 41 CAACAGAGTCCCCTGGAGACGGCTCTTCCGGAAGCCTGCTG CAACAGAGTCCCCTGGAGATGGCTCTTCCGGAAGCCTGCTG < 41bp 0.504716200574372 0.718687032905241 NA NA prediction 0.427941664661738 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594697 chr20:61594696 nonsynonymous SNV 0.866 2 20 hm7G_associated_SNPs_27166 0 0 1 0 2 SLC17A9 chr20:61594721 5'GT 61594721 Upstream 26bp 24717 chr17 78023898 78023898 1 + G A SKCM 78023899 + 78023879 78023919 41 AGAGCCGAGCCCAGCGGCAGGAGCTGGGGGTGAATCTCTAT AGAGCCGAGCCCAGCGGCAAGAGCTGGGGGTGAATCTCTAT < 41bp 0.512325633974875 0.726292333089267 NA NA prediction 0.427933398228785 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78023899 chr17:78023898 synonymous SNV . 0 20 hm7G_associated_SNPs_27168 0 0 1 0 1 CCDC40 chr17:78023863 3'AG 78023863 Downstream 36bp 24718 chr5 176523307 176523307 1 + G A SKCM 176523308 + 176523288 176523328 41 GGCCGCCTGCCTGTGAAGTGGATGGCGCCCGAGGCCTTGTT GGCCGCCTGCCTGTGAAGTAGATGGCGCCCGAGGCCTTGTT < 41bp 0.500942289557994 0.71490121426714 NA NA prediction 0.427917849418291 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176523308 chr5:176523307 stopgain 0.992 1 20 hm7G_associated_SNPs_27170 0 0 1 0 2 FGFR4 chr5:176523288 3'AG 176523288 Downstream 20bp 24719 chr5 176523307 176523307 1 + G A SKCM 176523308 + 176523288 176523328 41 GGCCGCCTGCCTGTGAAGTGGATGGCGCCCGAGGCCTTGTT GGCCGCCTGCCTGTGAAGTAGATGGCGCCCGAGGCCTTGTT < 41bp 0.500942289557994 0.71490121426714 NA NA prediction 0.427917849418291 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176523308 chr5:176523307 stopgain 0.992 1 20 hm7G_associated_SNPs_27170 0 0 1 0 2 FGFR4 chr5:176523358 5'GT 176523358 Upstream 52bp 24720 chr7 5327489 5327489 1 + G A GBM 5327490 + 5327470 5327510 41 GCCTTGAGGAGCCCAGCGTGGCAGGCACACCAGACCCGGGC GCCTTGAGGAGCCCAGCGTAGCAGGCACACCAGACCCGGGC < 41bp 0.569248473068169 0.783204336277849 NA NA prediction 0.42791172641936 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5327490 chr7:5327489 synonymous SNV . 0 20 hm7G_associated_SNPs_27171 0 0 1 0 2 SLC29A4 chr7:5327437 3'AG 5327437 Downstream 53bp 24721 chr7 5327489 5327489 1 + G A GBM 5327490 + 5327470 5327510 41 GCCTTGAGGAGCCCAGCGTGGCAGGCACACCAGACCCGGGC GCCTTGAGGAGCCCAGCGTAGCAGGCACACCAGACCCGGGC < 41bp 0.569248473068169 0.783204336277849 NA NA prediction 0.42791172641936 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5327490 chr7:5327489 synonymous SNV . 0 20 hm7G_associated_SNPs_27171 0 0 1 0 2 SLC29A4 chr7:5327440 3'AG 5327440 Downstream 50bp 24722 chr11 63066443 63066443 1 + G T HNSC 63066444 + 63066424 63066464 41 TCACCAATAAACTAGATGAGGGCTTAAAGGCACTTAGAAAA TCACCAATAAACTAGATGATGGCTTAAAGGCACTTAGAAAA < 41bp 0.380835311761862 0.713954856529985 NA NA prediction 0.427909713059969 Functional Gain - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63066444 chr11:63066443 nonsynonymous SNV 0.757 0 20 hm7G_associated_SNPs_27172 0 0 0 0 2 SLC22A10 chr11:63066392 3'AG 63066392 Downstream 52bp 24723 chr11 63066443 63066443 1 + G T HNSC 63066444 + 63066424 63066464 41 TCACCAATAAACTAGATGAGGGCTTAAAGGCACTTAGAAAA TCACCAATAAACTAGATGATGGCTTAAAGGCACTTAGAAAA < 41bp 0.380835311761862 0.713954856529985 NA NA prediction 0.427909713059969 Functional Gain - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63066444 chr11:63066443 nonsynonymous SNV 0.757 0 20 hm7G_associated_SNPs_27172 0 0 0 0 2 SLC22A10 chr11:63066515 5'GT 63066515 Upstream 73bp 24724 chr17 19316653 19316653 1 + G A SARC 19316654 + 19316634 19316674 41 CCTGCAGGGCTGCAGGTGGGGCGCCAATGGCCTCGCCAGGG CCTGCAGGGCTGCAGGTGGAGCGCCAATGGCCTCGCCAGGG < 41bp 0.541404703236877 0.755357394364065 NA NA prediction 0.427905382254376 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316654 chr17:19316653 nonsynonymous SNV 0.024 3 20 hm7G_associated_SNPs_27173 0 0 0 0 2 RNF112 chr17:19316593 3'AG 19316593 Downstream 61bp 24725 chr17 19316653 19316653 1 + G A SARC 19316654 + 19316634 19316674 41 CCTGCAGGGCTGCAGGTGGGGCGCCAATGGCCTCGCCAGGG CCTGCAGGGCTGCAGGTGGAGCGCCAATGGCCTCGCCAGGG < 41bp 0.541404703236877 0.755357394364065 NA NA prediction 0.427905382254376 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316654 chr17:19316653 nonsynonymous SNV 0.024 3 20 hm7G_associated_SNPs_27173 0 0 0 0 2 RNF112 chr17:19316724 5'GT 19316724 Upstream 72bp 24726 chr17 44952531 44952531 1 + G T rs34072914 44952532 + 44952512 44952552 41 TCACCCACACCCTGGCCCGGGCCTGCAGCGCTGGGCGCATG TCACCCACACCCTGGCCCGTGCCTGCAGCGCTGGGCGCATG < 41bp 0.698631934077574 0.912583846376356 NA NA prediction 0.427903824597565 Functional Gain - WNT9B ENSG00000158955 CDS Human protein_coding chr17:44952532 chr17:44952531 synonymous SNV . 0 20 hm7G_associated_SNPs_27174 0 0 0 0 1 WNT9B chr17:44952467 3'AG 44952467 Downstream 65bp 24727 chr16 28895898 28895898 1 + G A SKCM 28895899 + 28895879 28895919 41 CCCTACTCTCTCCACAGTGGGGGACAAAGTCCCTGCAGACA CCCTACTCTCTCCACAGTGAGGGACAAAGTCCCTGCAGACA < 41bp 0.508188232506656 0.722135038550158 NA NA prediction 0.427893612087004 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28895899 chr16:28895898 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_27175 0 0 1 0 2 ATP2A1 chr16:28895896 3'AG 28895896 Downstream 3bp 24728 chr16 28895898 28895898 1 + G A SKCM 28895899 + 28895879 28895919 41 CCCTACTCTCTCCACAGTGGGGGACAAAGTCCCTGCAGACA CCCTACTCTCTCCACAGTGAGGGACAAAGTCCCTGCAGACA < 41bp 0.508188232506656 0.722135038550158 NA NA prediction 0.427893612087004 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28895899 chr16:28895898 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_27175 0 0 1 0 2 ATP2A1 chr16:28895976 5'GT 28895976 Upstream 79bp 24729 chr12 57972113 57972113 1 + G T UCEC 57972114 + 57972094 57972134 41 ACCTGGAACAGCTTACAAAGGTTCACAAACAGGTAAGAGTC ACCTGGAACAGCTTACAAATGTTCACAAACAGGTAAGAGTC < 41bp 0.683968761416287 0.897914582113869 NA NA prediction 0.427891641395164 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57972114 chr12:57972113 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27176 0 0 1 0 1 KIF5A chr12:57972125 5'GT 57972125 Upstream 13bp 24730 chr19 7960521 7960521 1 + G A LIHC 7960522 + 7960502 7960542 41 CCGAGTTCAAGCAGTTCACGGAACAGCAGCCTGCGTTCAAG CCGAGTTCAAGCAGTTCACAGAACAGCAGCCTGCGTTCAAG < 41bp 0.516450189690557 0.730393834148287 NA NA prediction 0.42788728891546 Functional Gain - LRRC8E ENSG00000171017 CDS Human protein_coding chr19:7960522 chr19:7960521 synonymous SNV . 0 20 hm7G_associated_SNPs_27177 0 0 0 0 1 LRRC8E chr19:7960484 3'AG 7960484 Downstream 38bp 24731 chr16 88740137 88740137 1 + G A rs192919032 88740138 + 88740118 88740158 41 GAGGTCCACAGATTTACCCGGCTCAAGACTGGGAGATGGGA GAGGTCCACAGATTTACCCAGCTCAAGACTGGGAGATGGGA < 41bp 0.494039504157336 0.713939655903438 NA NA prediction 0.427879311806876 Functional Gain - SNAI3-AS1 ENSG00000260630 ncRNA_exonic Human antisense chr16:88740138 chr16:88740137 . . 0 20 hm7G_associated_SNPs_27179 0 0 0 0 1 SNAI3-AS1 chr16:88740167 5'GT 88740167 Upstream 31bp 24732 chr19 14038731 14038731 1 + G A rs77389229 14038732 + 14038712 14038752 41 GATGGTCGCCGGCCCACAGGGGGGCGACTGGAGGTAATGGT GATGGTCGCCGGCCCACAGAGGGGCGACTGGAGGTAATGGT < 41bp 0.495891926088488 0.713934645214932 NA NA prediction 0.427869290429864 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14038732 chr19:14038731 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27180 0 0 1 0 1 CC2D1A chr19:14038706 3'AG 14038706 Downstream 26bp 24733 chr10 124036328 124036328 1 + G A rs11200524 124036329 + 124036309 124036349 41 AAAGCTCGGCTGGAACGCCGGGTCACTGGCTCAACCAACCG AAAGCTCGGCTGGAACGCCAGGTCACTGGCTCAACCAACCG < 41bp 0.519159083102715 0.733091294345363 NA NA prediction 0.427864422485295 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124036329 chr10:124036328 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_27181 0 0 0 0 2 BTBD16 chr10:124036303 3'AG 124036303 Downstream 26bp 24734 chr10 124036328 124036328 1 + G A rs11200524 124036329 + 124036309 124036349 41 AAAGCTCGGCTGGAACGCCGGGTCACTGGCTCAACCAACCG AAAGCTCGGCTGGAACGCCAGGTCACTGGCTCAACCAACCG < 41bp 0.519159083102715 0.733091294345363 NA NA prediction 0.427864422485295 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124036329 chr10:124036328 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_27181 0 0 0 0 2 BTBD16 chr10:124036306 3'AG 124036306 Downstream 23bp 24735 chr1 227153388 227153388 1 + G A UCEC 227153389 + 227153369 227153409 41 CAGCTCAGCGAGCATGCCCGGGAGCGGAAGGTGCCTGTGAC CAGCTCAGCGAGCATGCCCAGGAGCGGAAGGTGCCTGTGAC < 41bp 0.501302434555089 0.715231199796292 NA NA prediction 0.427857530482405 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227153389 chr1:227153388 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_27182 0 0 1 0 1 COQ8A chr1:227153438 5'GT 227153438 Upstream 51bp 24736 chr11 47074048 47074048 1 + C T COAD 47074049 + 47074029 47074069 41 GGCCTTCTGGAGATGCTTCCGAACTGTGGGCAAAAATGGCG GGCCTTCTGGAGATGCTTCTGAACTGTGGGCAAAAATGGCG < 41bp 0.496980201616227 0.713919482583531 NA NA prediction 0.427838965167062 Functional Gain - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47074049 chr11:47074048 stopgain 1.000 1 20 hm7G_associated_SNPs_27184 0 0 0 0 1 C11orf49 chr11:47074069 5'GT 47074069 Upstream 22bp 24737 chr17 40815027 40815027 1 + G A COAD 40815028 + 40815008 40815048 41 CTCCATCGCTGGGGGTACGGGTTCTGGCCTGGGCTCCTACC CTCCATCGCTGGGGGTACGAGTTCTGGCCTGGGCTCCTACC < 41bp 0.505010817543631 0.718927250273824 NA NA prediction 0.427832865460386 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40815028 chr17:40815027 nonsynonymous SNV 0.910 5 20 hm7G_associated_SNPs_27185 0 0 1 0 1 TUBG2 chr17:40814991 3'AG 40814991 Downstream 37bp 24738 chr20 44639874 44639874 1 + G A STAD 44639875 + 44639855 44639895 41 CTCTGCCTGCACCACCGACGGTCGCTCCGACGGCTTGCCCT CTCTGCCTGCACCACCGACAGTCGCTCCGACGGCTTGCCCT < 41bp 0.540813915844603 0.754714276984535 NA NA prediction 0.427800722279864 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639875 chr20:44639874 nonsynonymous SNV 0.169 4 20 hm7G_associated_SNPs_27188 0 0 0 0 1 MMP9 chr20:44639782 3'AG 44639782 Downstream 93bp 24739 chr21 43852251 43852251 1 + G A MESO 43852252 + 43852232 43852272 41 CGTGCTGGTGGTTCGCCACGGGGAGAGAGTGGATCAGATCT CGTGCTGGTGGTTCGCCACAGGGAGAGAGTGGATCAGATCT < 41bp 0.501331720393838 0.715229876523637 NA NA prediction 0.427796312259599 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43852252 chr21:43852251 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_27190 0 0 0 0 2 UBASH3A chr21:43852212 3'AG 43852212 Downstream 40bp 24740 chr21 43852251 43852251 1 + G A MESO 43852252 + 43852232 43852272 41 CGTGCTGGTGGTTCGCCACGGGGAGAGAGTGGATCAGATCT CGTGCTGGTGGTTCGCCACAGGGAGAGAGTGGATCAGATCT < 41bp 0.501331720393838 0.715229876523637 NA NA prediction 0.427796312259599 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43852252 chr21:43852251 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_27190 0 0 0 0 2 UBASH3A chr21:43852311 5'GT 43852311 Upstream 61bp 24741 chr16 28943875 28943875 1 + G A STAD 28943876 + 28943856 28943896 41 GCTTCTACCTGTGCCAGCCGGGGCCCCCCTCTGAGAAGGCC GCTTCTACCTGTGCCAGCCAGGGCCCCCCTCTGAGAAGGCC < 41bp 0.482732814406552 0.71389713284059 NA NA prediction 0.42779426568118 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943876 chr16:28943875 synonymous SNV . 0 20 hm7G_associated_SNPs_27191 0 0 0 0 1 CD19 chr16:28943933 5'GT 28943933 Upstream 59bp 24742 chr1 32089152 32089152 1 + G T UCEC 32089153 + 32089133 32089173 41 ACCACCTCAGCACTGGTGCGGAACTGGAAGCGCCCCTCAGA ACCACCTCAGCACTGGTGCTGAACTGGAAGCGCCCCTCAGA < 41bp 0.687703106136623 0.901590008138956 NA NA prediction 0.427773804004667 Functional Gain - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32089153 chr1:32089152 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_27193 0 0 0 0 1 HCRTR1 chr1:32089124 3'AG 32089124 Downstream 29bp 24743 chr13 78178508 78178508 1 + G T UCEC 78178509 + 78178489 78178529 41 AGAAAAAAAGACCTTGATGGGCTTATTAAAGTGGATCCTGA AGAAAAAAAGACCTTGATGTGCTTATTAAAGTGGATCCTGA < 41bp 0.407381377990532 0.713874724661072 NA NA prediction 0.427749449322145 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78178509 chr13:78178508 nonsynonymous SNV 0.021 1 20 hm7G_associated_SNPs_27194 0 0 0 0 2 SCEL chr13:78178491 3'AG 78178491 Downstream 18bp 24744 chr13 78178508 78178508 1 + G T UCEC 78178509 + 78178489 78178529 41 AGAAAAAAAGACCTTGATGGGCTTATTAAAGTGGATCCTGA AGAAAAAAAGACCTTGATGTGCTTATTAAAGTGGATCCTGA < 41bp 0.407381377990532 0.713874724661072 NA NA prediction 0.427749449322145 Functional Gain - SCEL ENSG00000136155 CDS Human protein_coding chr13:78178509 chr13:78178508 nonsynonymous SNV 0.021 1 20 hm7G_associated_SNPs_27194 0 0 0 0 2 SCEL chr13:78178550 5'GT 78178550 Upstream 43bp 24745 chr11 15134098 15134098 1 + G T LUAD 15134099 + 15134079 15134119 41 GGAGTCCAGGAGTCCAGGAGGCTGTGCTGTGCCGTATGTAT GGAGTCCAGGAGTCCAGGATGCTGTGCTGTGCCGTATGTAT < 41bp 0.385572720281332 0.71386699350848 NA NA prediction 0.42773398701696 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15134099 chr11:15134098 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_27196 0 0 1 0 1 INSC chr11:15134111 5'GT 15134111 Upstream 14bp 24746 chr14 77706031 77706031 1 + C T SKCM 77706032 + 77706012 77706052 41 CAGGATCCACCCCTGTGCCCGCCTGTGCTTCTGCAAGTGCT CAGGATCCACCCCTGTGCCTGCCTGTGCTTCTGCAAGTGCT < 41bp 0.523268004216961 0.737133130762575 NA NA prediction 0.427730253091227 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77706032 chr14:77706031 nonsynonymous SNV 0.957 1 20 hm7G_associated_SNPs_27197 0 0 0 0 2 TMEM63C chr14:77705946 3'AG 77705946 Downstream 86bp 24747 chr14 77706031 77706031 1 + C T SKCM 77706032 + 77706012 77706052 41 CAGGATCCACCCCTGTGCCCGCCTGTGCTTCTGCAAGTGCT CAGGATCCACCCCTGTGCCTGCCTGTGCTTCTGCAAGTGCT < 41bp 0.523268004216961 0.737133130762575 NA NA prediction 0.427730253091227 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77706032 chr14:77706031 nonsynonymous SNV 0.957 1 20 hm7G_associated_SNPs_27197 0 0 0 0 2 TMEM63C chr14:77706069 5'GT 77706069 Upstream 39bp 24748 chr11 130067803 130067803 1 + G T LIHC 130067804 + 130067784 130067824 41 AGCTGCGCTGTGATGGCTGGGCCGACTGCACCGACCACAGC AGCTGCGCTGTGATGGCTGTGCCGACTGCACCGACCACAGC < 41bp 0.360015355322646 0.713859811038539 NA NA prediction 0.427719622077078 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130067804 chr11:130067803 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_27199 0 0 0 0 2 ST14 chr11:130067736 3'AG 130067736 Downstream 68bp 24749 chr11 130067803 130067803 1 + G T LIHC 130067804 + 130067784 130067824 41 AGCTGCGCTGTGATGGCTGGGCCGACTGCACCGACCACAGC AGCTGCGCTGTGATGGCTGTGCCGACTGCACCGACCACAGC < 41bp 0.360015355322646 0.713859811038539 NA NA prediction 0.427719622077078 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130067804 chr11:130067803 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_27199 0 0 0 0 2 ST14 chr11:130067840 5'GT 130067840 Upstream 38bp 24750 chr20 61386132 61386132 1 + G A rs75489269 61386133 + 61386113 61386153 41 CCGTCATGGTACGCCAGGCGGCCGAGCAGGGCCAAGTGTGC CCGTCATGGTACGCCAGGCAGCCGAGCAGGGCCAAGTGTGC < 41bp 0.540139653430788 0.753998400345091 NA NA prediction 0.427717493828606 Functional Gain - NTSR1 ENSG00000101188 CDS Human protein_coding chr20:61386133 chr20:61386132 synonymous SNV . 0 20 hm7G_associated_SNPs_27200 0 0 0 0 1 NTSR1 chr20:61386037 3'AG 61386037 Downstream 96bp 24751 chr7 129940699 129940699 1 + G T LUAD 129940700 + 129940680 129940720 41 GAAATGCAACACAATGAAGGGCAAGAACGGAGCAGTAATAA GAAATGCAACACAATGAAGTGCAAGAACGGAGCAGTAATAA < 41bp 0.690582481429736 0.904438947373313 NA NA prediction 0.427712931887154 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129940700 chr7:129940699 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_27201 0 0 0 0 2 CPA4 chr7:129940656 3'AG 129940656 Downstream 44bp 24752 chr7 129940699 129940699 1 + G T LUAD 129940700 + 129940680 129940720 41 GAAATGCAACACAATGAAGGGCAAGAACGGAGCAGTAATAA GAAATGCAACACAATGAAGTGCAAGAACGGAGCAGTAATAA < 41bp 0.690582481429736 0.904438947373313 NA NA prediction 0.427712931887154 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129940700 chr7:129940699 nonsynonymous SNV 0.984 0 20 hm7G_associated_SNPs_27201 0 0 0 0 2 CPA4 chr7:129940754 5'GT 129940754 Upstream 56bp 24753 chr12 111291332 111291332 1 + C T rs143432780 111291333 + 111291313 111291353 41 CAGGAAGATGGTGGAAAGCCGGAAGTCTTTTAAGTTCCGAA CAGGAAGATGGTGGAAAGCTGGAAGTCTTTTAAGTTCCGAA < 41bp 0.505331792915368 0.719186813429338 NA NA prediction 0.427710041027939 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111291333 chr12:111291332 nonsynonymous SNV 0.941 4 20 hm7G_associated_SNPs_27202 0 0 0 0 1 CCDC63 chr12:111291378 5'GT 111291378 Upstream 47bp 24754 chr4 520962 520962 1 + G A rs138345843 520963 + 520943 520983 41 CTGGGCGTCTACTGCTACCGGGCGGCCATCGGGAGTGTCCG CTGGGCGTCTACTGCTACCAGGCGGCCATCGGGAGTGTCCG < 41bp 0.506665092203761 0.720517698572744 NA NA prediction 0.427705212737967 Functional Gain - PIGG ENSG00000174227 CDS Human protein_coding chr4:520963 chr4:520962 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_27203 0 0 0 0 1 PIGG chr4:521019 5'GT 521019 Upstream 58bp 24755 chr22 51143398 51143398 1 + G A UCEC 51143399 + 51143379 51143419 41 CTGTCTATCCCAGGTGAACGGGGTGAACGTGGTGAAGGTCG CTGTCTATCCCAGGTGAACAGGGTGAACGTGGTGAAGGTCG < 41bp 0.529258250419201 0.743107427334099 NA NA prediction 0.427698353829795 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51143399 chr22:51143398 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27206 0 0 1 0 1 SHANK3 chr22:51143392 3'AG 51143392 Downstream 7bp 24756 chr1 175086261 175086261 1 + C T UCEC 175086262 + 175086242 175086282 41 GTCCTGACGGGCCTGAGGCCGGGTGTGGAGTACACGGTGCA GTCCTGACGGGCCTGAGGCTGGGTGTGGAGTACACGGTGCA < 41bp 0.504480897638386 0.718325992561499 NA NA prediction 0.427690189846227 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175086262 chr1:175086261 nonsynonymous SNV 0.519 3 20 hm7G_associated_SNPs_27209 0 0 0 0 1 TNN chr1:175086341 5'GT 175086341 Upstream 81bp 24757 chr8 98900443 98900443 1 + C T STAD 98900444 + 98900424 98900464 41 CTCTAGGGGCAGACACGCTCGGACCCACCCGCAGACGGCCC CTCTAGGGGCAGACACGCTTGGACCCACCCGCAGACGGCCC < 41bp 0.509557298628506 0.723397593920471 NA NA prediction 0.427680590583929 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:98900444 chr8:98900443 nonsynonymous SNV 0.174 2 20 hm7G_associated_SNPs_27214 0 0 0 0 1 MATN2 chr8:98900470 5'GT 98900470 Upstream 28bp 24758 chr17 38457815 38457815 1 + G T ESCA 38457816 + 38457796 38457836 41 CAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAAGAGA CAGGGCTCTTGGAAGCCAGTGGCATTTTAGGATTAAAGAGA < 41bp 0.370987409853381 0.713840164282832 NA NA prediction 0.427680328565665 Functional Gain - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38457816 chr17:38457815 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_27215 0 0 1 0 2 CDC6 chr17:38457720 3'AG 38457720 Downstream 96bp 24759 chr17 38457815 38457815 1 + G T ESCA 38457816 + 38457796 38457836 41 CAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAAGAGA CAGGGCTCTTGGAAGCCAGTGGCATTTTAGGATTAAAGAGA < 41bp 0.370987409853381 0.713840164282832 NA NA prediction 0.427680328565665 Functional Gain - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38457816 chr17:38457815 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_27215 0 0 1 0 2 CDC6 chr17:38457860 5'GT 38457860 Upstream 46bp 24760 chr10 32761409 32761409 1 + G T STAD 32761410 + 32761390 32761430 41 ATTTATCGAACTTTAACAGGGATAAAGAAAATCGACCAGAA ATTTATCGAACTTTAACAGTGATAAAGAAAATCGACCAGAA < 41bp 0.406351035729982 0.713834273232166 NA NA prediction 0.427668546464332 Functional Gain - CCDC7 ENSG00000216937 CDS Human protein_coding chr10:32761410 chr10:32761409 stopgain 0.143 0 20 hm7G_associated_SNPs_27216 0 0 0 0 2 CCDC7 chr10:32761409 3'AG 32761409 Downstream 1bp 24761 chr10 32761409 32761409 1 + G T STAD 32761410 + 32761390 32761430 41 ATTTATCGAACTTTAACAGGGATAAAGAAAATCGACCAGAA ATTTATCGAACTTTAACAGTGATAAAGAAAATCGACCAGAA < 41bp 0.406351035729982 0.713834273232166 NA NA prediction 0.427668546464332 Functional Gain - CCDC7 ENSG00000216937 CDS Human protein_coding chr10:32761410 chr10:32761409 stopgain 0.143 0 20 hm7G_associated_SNPs_27216 0 0 0 0 2 CCDC7 chr10:32761470 5'GT 32761470 Upstream 62bp 24762 chr5 640670 640670 1 + G T THCA 640671 + 640651 640691 41 CAGCAGCAGCAGCACGCCCGGGAGATGAGCGAGGTGACGGC CAGCAGCAGCAGCACGCCCTGGAGATGAGCGAGGTGACGGC < 41bp 0.682094681620003 0.895926737955192 NA NA prediction 0.427664112670378 Functional Gain - CEP72 ENSG00000112877 CDS Human protein_coding chr5:640671 chr5:640670 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_27218 0 0 1 0 1 CEP72 chr5:640719 5'GT 640719 Upstream 50bp 24763 chr19 1008150 1008150 1 + G A SKCM 1008151 + 1008131 1008171 41 GCCCCCAGGCTATGGGATCGGACTGCCCCAGAACTCGCCGC GCCCCCAGGCTATGGGATCAGACTGCCCCAGAACTCGCCGC < 41bp 0.503586748119981 0.717412488869786 NA NA prediction 0.427651481499609 Functional Gain - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1008151 chr19:1008150 nonsynonymous SNV 0.471 3 20 hm7G_associated_SNPs_27220 0 0 0 0 1 GRIN3B chr19:1008139 3'AG 1008139 Downstream 12bp 24764 chr10 43607557 43607557 1 + G T UCEC 43607558 + 43607538 43607578 41 CACCTGCAGATGTGGCCGAGGAGGCGGGCTGCCCCCTGTCC CACCTGCAGATGTGGCCGATGAGGCGGGCTGCCCCCTGTCC < 41bp 0.364596655367228 0.713820519026455 NA NA prediction 0.427641038052911 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43607558 chr10:43607557 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_27221 0 0 0 0 1 RET chr10:43607547 3'AG 43607547 Downstream 11bp 24765 chr3 10255194 10255194 1 + C T PRAD 10255195 + 10255175 10255215 41 GTTCAAGTCCAGGATCAATCGAAAGATTCTTCCAGGCAGAG GTTCAAGTCCAGGATCAATTGAAAGATTCTTCCAGGCAGAG < 41bp 0.509692124020802 0.723508945833893 NA NA prediction 0.427633643626181 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10255195 chr3:10255194 synonymous SNV . 0 20 hm7G_associated_SNPs_27222 0 0 0 0 2 IRAK2 chr3:10255168 3'AG 10255168 Downstream 27bp 24766 chr3 10255194 10255194 1 + C T PRAD 10255195 + 10255175 10255215 41 GTTCAAGTCCAGGATCAATCGAAAGATTCTTCCAGGCAGAG GTTCAAGTCCAGGATCAATTGAAAGATTCTTCCAGGCAGAG < 41bp 0.509692124020802 0.723508945833893 NA NA prediction 0.427633643626181 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10255195 chr3:10255194 synonymous SNV . 0 20 hm7G_associated_SNPs_27222 0 0 0 0 2 IRAK2 chr3:10255232 5'GT 10255232 Upstream 39bp 24767 chr13 39616409 39616409 1 + G T UCEC 39616410 + 39616390 39616430 41 CATTGTGGATGGAGATGGAGGATTGAATAACAGATTGATCA CATTGTGGATGGAGATGGATGATTGAATAACAGATTGATCA < 41bp 0.677676011540608 0.891489342645959 NA NA prediction 0.427626662210703 Functional Gain - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39616410 chr13:39616409 stopgain 1.000 1 20 hm7G_associated_SNPs_27223 0 0 1 0 1 NHLRC3 chr13:39616442 5'GT 39616442 Upstream 34bp 24768 chr7 102045101 102045101 1 + G T UCEC 102045102 + 102045082 102045122 41 AGAATAAAATTGCTGCAGAGGAGCAGACCGCAAAGCGCCGG AGAATAAAATTGCTGCAGATGAGCAGACCGCAAAGCGCCGG < 41bp 0.690611768983114 0.904420919183049 NA NA prediction 0.427618300399871 Functional Gain - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102045102 chr7:102045101 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_27224 0 0 1 0 2 PRKRIP1 chr7:102045045 3'AG 102045045 Downstream 57bp 24769 chr7 102045101 102045101 1 + G T UCEC 102045102 + 102045082 102045122 41 AGAATAAAATTGCTGCAGAGGAGCAGACCGCAAAGCGCCGG AGAATAAAATTGCTGCAGATGAGCAGACCGCAAAGCGCCGG < 41bp 0.690611768983114 0.904420919183049 NA NA prediction 0.427618300399871 Functional Gain - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102045102 chr7:102045101 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_27224 0 0 1 0 2 PRKRIP1 chr7:102045130 5'GT 102045130 Upstream 30bp 24770 chr1 22927488 22927488 1 + G A rs146856523 22927489 + 22927469 22927509 41 GACTGTTGGCACAAGGACCGGGCGCAGCGGCCTCGCTTCTC GACTGTTGGCACAAGGACCAGGCGCAGCGGCCTCGCTTCTC < 41bp 0.52065184136602 0.734457653478273 NA NA prediction 0.427611624224506 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927489 chr1:22927488 nonsynonymous SNV 0.931 3 20 hm7G_associated_SNPs_27225 0 0 1 0 2 EPHA8 chr1:22927391 3'AG 22927391 Downstream 98bp 24771 chr1 22927488 22927488 1 + G A rs146856523 22927489 + 22927469 22927509 41 GACTGTTGGCACAAGGACCGGGCGCAGCGGCCTCGCTTCTC GACTGTTGGCACAAGGACCAGGCGCAGCGGCCTCGCTTCTC < 41bp 0.52065184136602 0.734457653478273 NA NA prediction 0.427611624224506 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927489 chr1:22927488 nonsynonymous SNV 0.931 3 20 hm7G_associated_SNPs_27225 0 0 1 0 2 EPHA8 chr1:22927581 5'GT 22927581 Upstream 94bp 24772 chr18 48252480 48252480 1 + C T UCEC 48252481 + 48252461 48252501 41 TCCGCATTGAGGATGAGATCGACGACATCGTGCTGATGGCC TCCGCATTGAGGATGAGATTGACGACATCGTGCTGATGGCC < 41bp 0.505602024236727 0.719406469299004 NA NA prediction 0.427608890124553 Functional Gain - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48252481 chr18:48252480 synonymous SNV . 0 20 hm7G_associated_SNPs_27226 0 0 0 0 1 MAPK4 chr18:48252545 5'GT 48252545 Upstream 66bp 24773 chr14 69795192 69795192 1 + G A SKCM 69795193 + 69795173 69795213 41 TCCGGTCCCGAGTGCGTGGGGCGGACGTGGCTGCAGCTACC TCCGGTCCCGAGTGCGTGGAGCGGACGTGGCTGCAGCTACC < 41bp 0.531568014112148 0.74536088340086 NA NA prediction 0.427585738577424 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69795193 chr14:69795192 synonymous SNV . 0 20 hm7G_associated_SNPs_27228 0 0 0 0 2 GALNT16 chr14:69795167 3'AG 69795167 Downstream 26bp 24774 chr14 69795192 69795192 1 + G A SKCM 69795193 + 69795173 69795213 41 TCCGGTCCCGAGTGCGTGGGGCGGACGTGGCTGCAGCTACC TCCGGTCCCGAGTGCGTGGAGCGGACGTGGCTGCAGCTACC < 41bp 0.531568014112148 0.74536088340086 NA NA prediction 0.427585738577424 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69795193 chr14:69795192 synonymous SNV . 0 20 hm7G_associated_SNPs_27228 0 0 0 0 2 GALNT16 chr14:69795288 5'GT 69795288 Upstream 97bp 24775 chr19 7914186 7914186 1 + C T UCEC 7914187 + 7914167 7914207 41 TGGGCTACTGCCAGGGAAGCGCCTTCATCGTGGGCCTGCTC TGGGCTACTGCCAGGGAAGTGCCTTCATCGTGGGCCTGCTC < 41bp 0.499511475523097 0.713790449355315 NA NA prediction 0.427580898710631 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7914187 chr19:7914186 synonymous SNV . 0 20 hm7G_associated_SNPs_27231 0 0 0 0 2 EVI5L chr19:7914142 3'AG 7914142 Downstream 45bp 24776 chr19 7914186 7914186 1 + C T UCEC 7914187 + 7914167 7914207 41 TGGGCTACTGCCAGGGAAGCGCCTTCATCGTGGGCCTGCTC TGGGCTACTGCCAGGGAAGTGCCTTCATCGTGGGCCTGCTC < 41bp 0.499511475523097 0.713790449355315 NA NA prediction 0.427580898710631 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7914187 chr19:7914186 synonymous SNV . 0 20 hm7G_associated_SNPs_27231 0 0 0 0 2 EVI5L chr19:7914216 5'GT 7914216 Upstream 31bp 24777 chr1 183204852 183204852 1 + G T UCEC 183204853 + 183204833 183204873 41 GGACGGTGCTGTGGTGCAAGGGCTTGTGGAAAAGTACGTTC GGACGGTGCTGTGGTGCAATGGCTTGTGGAAAAGTACGTTC < 41bp 0.360550977638341 0.713788003485059 NA NA prediction 0.427576006970118 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183204853 chr1:183204852 nonsynonymous SNV 0.298 3 20 hm7G_associated_SNPs_27232 0 0 0 0 1 LAMC2 chr1:183204865 5'GT 183204865 Upstream 14bp 24778 chr10 129839193 129839193 1 + C T rs75709098 129839194 + 129839174 129839214 41 TGGGTTTTAGCTTGCCGCTCGCCAGGGCTCTCAGGGGCAAC TGGGTTTTAGCTTGCCGCTTGCCAGGGCTCTCAGGGGCAAC < 41bp 0.497743371099027 0.713786174756083 NA NA prediction 0.427572349512165 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839194 chr10:129839193 synonymous SNV . 0 20 hm7G_associated_SNPs_27234 0 0 0 2 2 PTPRE chr10:129839139 3'AG 129839139 Downstream 55bp 24779 chr10 129839193 129839193 1 + C T rs75709098 129839194 + 129839174 129839214 41 TGGGTTTTAGCTTGCCGCTCGCCAGGGCTCTCAGGGGCAAC TGGGTTTTAGCTTGCCGCTTGCCAGGGCTCTCAGGGGCAAC < 41bp 0.497743371099027 0.713786174756083 NA NA prediction 0.427572349512165 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129839194 chr10:129839193 synonymous SNV . 0 20 hm7G_associated_SNPs_27234 0 0 0 2 2 PTPRE chr10:129839254 5'GT 129839254 Upstream 62bp 24780 chr2 95944795 95944795 1 + G A rs149624755 95944796 + 95944776 95944816 41 ACTGGCTGAAGGGTTCCCGGGCTTGGAGGCAGCTTCCCGCT ACTGGCTGAAGGGTTCCCGAGCTTGGAGGCAGCTTCCCGCT < 41bp 0.576885469133106 0.790664759249548 NA NA prediction 0.427558580232883 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944796 chr2:95944795 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_27236 0 0 0 0 2 PROM2 chr2:95944733 3'AG 95944733 Downstream 63bp 24781 chr2 95944795 95944795 1 + G A rs149624755 95944796 + 95944776 95944816 41 ACTGGCTGAAGGGTTCCCGGGCTTGGAGGCAGCTTCCCGCT ACTGGCTGAAGGGTTCCCGAGCTTGGAGGCAGCTTCCCGCT < 41bp 0.576885469133106 0.790664759249548 NA NA prediction 0.427558580232883 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944796 chr2:95944795 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_27236 0 0 0 0 2 PROM2 chr2:95944892 5'GT 95944892 Upstream 98bp 24782 chr11 118403685 118403685 1 + G T STAD 118403686 + 118403666 118403706 41 CCAGGAAGCTCAGGGCCCAGGCCTCCTGGTTGTCCTGTTTG CCAGGAAGCTCAGGGCCCATGCCTCCTGGTTGTCCTGTTTG < 41bp 0.36224788539163 0.713772917258944 NA NA prediction 0.427545834517888 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403686 chr11:118403685 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27237 0 0 0 0 1 TMEM25 chr11:118403632 3'AG 118403632 Downstream 54bp 24783 chr1 183510146 183510146 1 + G T LUAD 183510147 + 183510127 183510167 41 ATTTTTCCAAAGGTCACCAGGGTATTACAGGGGACAAAGAA ATTTTTCCAAAGGTCACCATGGTATTACAGGGGACAAAGAA < 41bp 0.696988614828086 0.910753355158483 NA NA prediction 0.427529480660794 Functional Gain - SMG7 ENSG00000116698 CDS Human protein_coding chr1:183510147 chr1:183510146 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27240 0 0 1 0 2 SMG7 chr1:183510119 3'AG 183510119 Downstream 28bp 24784 chr1 183510146 183510146 1 + G T LUAD 183510147 + 183510127 183510167 41 ATTTTTCCAAAGGTCACCAGGGTATTACAGGGGACAAAGAA ATTTTTCCAAAGGTCACCATGGTATTACAGGGGACAAAGAA < 41bp 0.696988614828086 0.910753355158483 NA NA prediction 0.427529480660794 Functional Gain - SMG7 ENSG00000116698 CDS Human protein_coding chr1:183510147 chr1:183510146 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27240 0 0 1 0 2 SMG7 chr1:183510238 5'GT 183510238 Upstream 93bp 24785 chr12 7019089 7019089 1 + G A STAD 7019090 + 7019070 7019110 41 AGAAGGTGGAAGGCTTGGAGGATCTGAGCAATCTCACCACC AGAAGGTGGAAGGCTTGGAAGATCTGAGCAATCTCACCACC < 41bp 0.49904474967279 0.71376341051789 NA NA prediction 0.42752682103578 Functional Gain - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7019090 chr12:7019089 synonymous SNV . 0 20 hm7G_associated_SNPs_27242 0 0 0 0 1 LRRC23 chr12:7019054 3'AG 7019054 Downstream 36bp 24786 chr1 119929329 119929329 1 + C T SKCM 119929330 + 119929310 119929350 41 CTGGTTTCAGAGCATAACTCGATTGCCCATCATCCTGAAAG CTGGTTTCAGAGCATAACTTGATTGCCCATCATCCTGAAAG < 41bp 0.496597996649131 0.713761157279212 NA NA prediction 0.427522314558423 Functional Gain - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119929330 chr1:119929329 stopgain 0.994 0 20 hm7G_associated_SNPs_27243 0 0 0 0 1 HAO2 chr1:119929245 3'AG 119929245 Downstream 85bp 24787 chr7 8110614 8110614 1 + C T STAD 8110615 + 8110595 8110635 41 TTACCGGAGCAGTAGTACTCGCAGCATTGACACTCAGACTC TTACCGGAGCAGTAGTACTTGCAGCATTGACACTCAGACTC < 41bp 0.514034269637363 0.727791641414476 NA NA prediction 0.427514743554227 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8110615 chr7:8110614 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27244 0 0 1 0 1 GLCCI1 chr7:8110551 3'AG 8110551 Downstream 64bp 24788 chr15 90162962 90162962 1 + C T UCEC 90162963 + 90162943 90162983 41 AAGTCTGAGACGAAGTCCTCGAATCAAGCAGTTGTCATTTA AAGTCTGAGACGAAGTCCTTGAATCAAGCAGTTGTCATTTA < 41bp 0.510293046877142 0.724048847581737 NA NA prediction 0.42751160140919 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90162963 chr15:90162962 stopgain 1.000 1 20 hm7G_associated_SNPs_27245 0 0 1 0 1 TICRR chr15:90162939 3'AG 90162939 Downstream 24bp 24789 chr1 25810707 25810707 1 + C T UCEC 25810708 + 25810688 25810728 41 CTCCCTTTCGAGCACCGAGCGAGGGATCCGCTCAGAAATGG CTCCCTTTCGAGCACCGAGTGAGGGATCCGCTCAGAAATGG < 41bp 0.4979996034115 0.713733300141265 NA NA prediction 0.42746660028253 Functional Gain - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25810708 chr1:25810707 stopgain 1.000 1 20 hm7G_associated_SNPs_27249 0 0 1 0 1 TMEM57 chr1:25810765 5'GT 25810765 Upstream 59bp 24790 chr20 37653881 37653881 1 + G T UCEC 37653882 + 37653862 37653902 41 TTGTTCTGTAGCACAATAAGGACTCTAAATGGTGTCAGGAA TTGTTCTGTAGCACAATAATGACTCTAAATGGTGTCAGGAA < 41bp 0.684534042182525 0.898261761557831 NA NA prediction 0.427455438750612 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37653882 chr20:37653881 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_27250 0 0 1 0 1 DHX35 chr20:37653873 3'AG 37653873 Downstream 9bp 24791 chr11 1874426 1874426 1 + G A SKCM 1874427 + 1874407 1874447 41 GGAGCGGGAAGAGTTGCTGGGGTAAGGGTCTGCGGCGACGC GGAGCGGGAAGAGTTGCTGAGGTAAGGGTCTGCGGCGACGC < 41bp 0.477661369089149 0.713725289682082 NA NA prediction 0.427450579364165 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1874427 chr11:1874426 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_27251 0 0 0 0 1 LSP1 chr11:1874427 5'GT 1874427 Upstream 2bp 24792 chr11 541550 541550 1 + G A rs143908864 541551 + 541531 541571 41 CTACAGCAGGCCCTGGCCCGGGTGGATGACCTTCGGCTGGT CTACAGCAGGCCCTGGCCCAGGTGGATGACCTTCGGCTGGT < 41bp 0.545674423543414 0.75939420460137 NA NA prediction 0.427439562115911 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:541551 chr11:541550 nonsynonymous SNV 0.971 0 20 hm7G_associated_SNPs_27252 0 0 0 0 2 LRRC56 chr11:541537 3'AG 541537 Downstream 14bp 24793 chr11 541550 541550 1 + G A rs143908864 541551 + 541531 541571 41 CTACAGCAGGCCCTGGCCCGGGTGGATGACCTTCGGCTGGT CTACAGCAGGCCCTGGCCCAGGTGGATGACCTTCGGCTGGT < 41bp 0.545674423543414 0.75939420460137 NA NA prediction 0.427439562115911 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:541551 chr11:541550 nonsynonymous SNV 0.971 0 20 hm7G_associated_SNPs_27252 0 0 0 0 2 LRRC56 chr11:541624 5'GT 541624 Upstream 75bp 24794 chr17 37882052 37882052 1 + C T GBM 37882053 + 37882033 37882073 41 CCTGCTGGAAAAGGGGGAGCGGCTGCCCCAGCCCCCCATCT CCTGCTGGAAAAGGGGGAGTGGCTGCCCCAGCCCCCCATCT < 41bp 0.50056885475682 0.714286744970312 NA NA prediction 0.427435780426984 Functional Gain - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37882053 chr17:37882052 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_27253 0 0 1 0 2 ERBB2 chr17:37881960 3'AG 37881960 Downstream 93bp 24795 chr17 37882052 37882052 1 + C T GBM 37882053 + 37882033 37882073 41 CCTGCTGGAAAAGGGGGAGCGGCTGCCCCAGCCCCCCATCT CCTGCTGGAAAAGGGGGAGTGGCTGCCCCAGCCCCCCATCT < 41bp 0.50056885475682 0.714286744970312 NA NA prediction 0.427435780426984 Functional Gain - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37882053 chr17:37882052 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_27253 0 0 1 0 2 ERBB2 chr17:37882106 5'GT 37882106 Upstream 55bp 24796 chr1 25617137 25617137 1 + G A STAD 25617138 + 25617118 25617158 41 CCTCTCTCCCCCAGTATTCGGCTGGCCACCATGAGTGCTTT CCTCTCTCCCCCAGTATTCAGCTGGCCACCATGAGTGCTTT < 41bp 0.500835040622988 0.714532802167823 NA NA prediction 0.427395523089668 Functional Gain - RHD ENSG00000187010 CDS Human protein_coding chr1:25617138 chr1:25617137 nonsynonymous SNV 0.193 2 20 hm7G_associated_SNPs_27258 0 0 1 0 1 RHD chr1:25617132 3'AG 25617132 Downstream 6bp 24797 chr3 112998769 112998769 1 + C T BLCA 112998770 + 112998750 112998790 41 GGTGTCGGGCTACAGCGGTCGCGTGTACGAGAGGCCCGTGG GGTGTCGGGCTACAGCGGTTGCGTGTACGAGAGGCCCGTGG < 41bp 0.499336025034945 0.713694442677029 NA NA prediction 0.427388885354058 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112998770 chr3:112998769 nonsynonymous SNV 0.240 4 20 hm7G_associated_SNPs_27260 0 0 0 0 1 BOC chr3:112998852 5'GT 112998852 Upstream 84bp 24798 chr16 30198731 30198731 1 + G A UCEC 30198732 + 30198712 30198752 41 CGTCCCCACGAGGGGACCCGGCCCGTGCGTGCAGTGTTCGT CGTCCCCACGAGGGGACCCAGCCCGTGCGTGCAGTGTTCGT < 41bp 0.523906953269223 0.737599010024777 NA NA prediction 0.427384113511108 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198732 chr16:30198731 nonsynonymous SNV 0.929 4 20 hm7G_associated_SNPs_27261 0 0 1 0 2 CORO1A chr16:30198703 3'AG 30198703 Downstream 29bp 24799 chr16 30198731 30198731 1 + G A UCEC 30198732 + 30198712 30198752 41 CGTCCCCACGAGGGGACCCGGCCCGTGCGTGCAGTGTTCGT CGTCCCCACGAGGGGACCCAGCCCGTGCGTGCAGTGTTCGT < 41bp 0.523906953269223 0.737599010024777 NA NA prediction 0.427384113511108 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198732 chr16:30198731 nonsynonymous SNV 0.929 4 20 hm7G_associated_SNPs_27261 0 0 1 0 2 CORO1A chr16:30198822 5'GT 30198822 Upstream 92bp 24800 chr12 117204665 117204665 1 + C T BLCA 117204666 + 117204646 117204686 41 TGGATCCTGGCCTTTCTGGCGGGGAACACCCTCTATGTGCT TGGATCCTGGCCTTTCTGGTGGGGAACACCCTCTATGTGCT < 41bp 0.502589723420422 0.716271628909233 NA NA prediction 0.427363810977621 Functional Gain - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117204666 chr12:117204665 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_27266 0 0 1 0 2 RNFT2 chr12:117204619 3'AG 117204619 Downstream 47bp 24801 chr12 117204665 117204665 1 + C T BLCA 117204666 + 117204646 117204686 41 TGGATCCTGGCCTTTCTGGCGGGGAACACCCTCTATGTGCT TGGATCCTGGCCTTTCTGGTGGGGAACACCCTCTATGTGCT < 41bp 0.502589723420422 0.716271628909233 NA NA prediction 0.427363810977621 Functional Gain - RNFT2 ENSG00000135119 CDS Human protein_coding chr12:117204666 chr12:117204665 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_27266 0 0 1 0 2 RNFT2 chr12:117204719 5'GT 117204719 Upstream 55bp 24802 chr14 52735280 52735280 1 + G A STAD 52735281 + 52735261 52735301 41 TGCCGAGCCGCGCGCGGACGGGAGGGAAGCGTCCCCTCAGC TGCCGAGCCGCGCGCGGACAGGAGGGAAGCGTCCCCTCAGC < 41bp 0.531877043200032 0.745552606565767 NA NA prediction 0.42735112673147 Functional Gain - PTGDR ENSG00000168229 CDS Human protein_coding chr14:52735281 chr14:52735280 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_27270 0 0 0 0 1 PTGDR chr14:52735378 5'GT 52735378 Upstream 99bp 24803 chr11 61491028 61491028 1 + C T ESCA 61491029 + 61491009 61491049 41 GAGGAGGCAGCGTAACCTGCGGACCTACAACCTGCGGTCAG GAGGAGGCAGCGTAACCTGTGGACCTACAACCTGCGGTCAG < 41bp 0.506400519931067 0.720071577196752 NA NA prediction 0.427342114531369 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61491029 chr11:61491028 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_27271 0 0 0 0 1 DAGLA chr11:61491044 5'GT 61491044 Upstream 17bp 24804 chr2 233398937 233398937 1 + G A STAD 233398938 + 233398918 233398958 41 GGCCCCTCGTCTGTAGGCCGGCCCCCAGCAAGCTCTGAGCA GGCCCCTCGTCTGTAGGCCAGCCCCCAGCAAGCTCTGAGCA < 41bp 0.524211030228338 0.737881531403938 NA NA prediction 0.427341002351199 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233398938 chr2:233398937 nonsynonymous SNV 0.199 1 20 hm7G_associated_SNPs_27272 0 0 0 0 1 CHRND chr2:233398934 3'AG 233398934 Downstream 4bp 24805 chr2 36706749 36706749 1 + C T UCEC 36706750 + 36706730 36706770 41 CATTCTGCCAGTGCGTCAACGGTGAACGCCACTGCGTTGCG CATTCTGCCAGTGCGTCAATGGTGAACGCCACTGCGTTGCG < 41bp 0.514778228348122 0.728444685623695 NA NA prediction 0.427332914551146 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36706750 chr2:36706749 synonymous SNV . 0 20 hm7G_associated_SNPs_27274 0 0 0 0 1 CRIM1 chr2:36706837 5'GT 36706837 Upstream 89bp 24806 chr17 65041002 65041002 1 + G A SKCM 65041003 + 65040983 65041023 41 CGGGCCCATCACCCTGCCCGGGGGTAACGTACCCACCCTCC CGGGCCCATCACCCTGCCCAGGGGTAACGTACCCACCCTCC < 41bp 0.533548139389719 0.747214469901195 NA NA prediction 0.427332661022952 Functional Gain - CACNG1 ENSG00000108878 CDS Human protein_coding chr17:65041003 chr17:65041002 nonsynonymous SNV 0.916 1 20 hm7G_associated_SNPs_27275 0 0 0 0 1 CACNG1 chr17:65041005 5'GT 65041005 Upstream 4bp 24807 chr11 124744739 124744739 1 + G A UCEC 124744740 + 124744720 124744760 41 GAGGCCAGCAGGGACTGGCGGAAGTGGCTGTGCGCCTGCAG GAGGCCAGCAGGGACTGGCAGAAGTGGCTGTGCGCCTGCAG < 41bp 0.514165792517219 0.727823107070593 NA NA prediction 0.427314629106748 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124744740 chr11:124744739 synonymous SNV . 0 20 hm7G_associated_SNPs_27278 0 0 0 0 2 ROBO3 chr11:124744684 3'AG 124744684 Downstream 56bp 24808 chr11 124744739 124744739 1 + G A UCEC 124744740 + 124744720 124744760 41 GAGGCCAGCAGGGACTGGCGGAAGTGGCTGTGCGCCTGCAG GAGGCCAGCAGGGACTGGCAGAAGTGGCTGTGCGCCTGCAG < 41bp 0.514165792517219 0.727823107070593 NA NA prediction 0.427314629106748 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124744740 chr11:124744739 synonymous SNV . 0 20 hm7G_associated_SNPs_27278 0 0 0 0 2 ROBO3 chr11:124744805 5'GT 124744805 Upstream 67bp 24809 chr2 46608780 46608780 1 + G A ESCA 46608781 + 46608761 46608801 41 GCCCAGACGTGCTGAGTCCGGCCATGGTAGCCCTCTCCAAC GCCCAGACGTGCTGAGTCCAGCCATGGTAGCCCTCTCCAAC < 41bp 0.506340462036566 0.719992346455391 NA NA prediction 0.42730376883765 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608781 chr2:46608780 synonymous SNV . 0 20 hm7G_associated_SNPs_27280 0 0 1 0 2 EPAS1 chr2:46608735 3'AG 46608735 Downstream 46bp 24810 chr2 46608780 46608780 1 + G A ESCA 46608781 + 46608761 46608801 41 GCCCAGACGTGCTGAGTCCGGCCATGGTAGCCCTCTCCAAC GCCCAGACGTGCTGAGTCCAGCCATGGTAGCCCTCTCCAAC < 41bp 0.506340462036566 0.719992346455391 NA NA prediction 0.42730376883765 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608781 chr2:46608780 synonymous SNV . 0 20 hm7G_associated_SNPs_27280 0 0 1 0 2 EPAS1 chr2:46608861 5'GT 46608861 Upstream 82bp 24811 chr9 127237763 127237763 1 + G T UCEC 127237764 + 127237744 127237784 41 TTTATGCTGCCTGCAATGAGGAGGTGAGTCTGGGGGTGCCG TTTATGCTGCCTGCAATGATGAGGTGAGTCTGGGGGTGCCG < 41bp 0.684888439748525 0.898533309491731 NA NA prediction 0.427289739486411 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127237764 chr9:127237763 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27281 0 0 0 0 2 PSMB7;NR5A1 chr9:127237725 3'AG 127237725 Downstream 39bp 24812 chr9 127237763 127237763 1 + G T UCEC 127237764 + 127237744 127237784 41 TTTATGCTGCCTGCAATGAGGAGGTGAGTCTGGGGGTGCCG TTTATGCTGCCTGCAATGATGAGGTGAGTCTGGGGGTGCCG < 41bp 0.684888439748525 0.898533309491731 NA NA prediction 0.427289739486411 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127237764 chr9:127237763 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27281 0 0 0 0 2 PSMB7;NR5A1 chr9:127237766 5'GT 127237766 Upstream 4bp 24813 chr1 12017040 12017040 1 + C T LUSC 12017041 + 12017021 12017061 41 CTGGCCTATGACACCCTCCCGGTCCTGATCCATGGCAACGG CTGGCCTATGACACCCTCCTGGTCCTGATCCATGGCAACGG < 41bp 0.499301999038562 0.713644699386659 NA NA prediction 0.427289398773317 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12017041 chr1:12017040 nonsynonymous SNV 0.892 4 20 hm7G_associated_SNPs_27282 0 0 1 0 2 PLOD1 chr1:12016974 3'AG 12016974 Downstream 67bp 24814 chr1 12017040 12017040 1 + C T LUSC 12017041 + 12017021 12017061 41 CTGGCCTATGACACCCTCCCGGTCCTGATCCATGGCAACGG CTGGCCTATGACACCCTCCTGGTCCTGATCCATGGCAACGG < 41bp 0.499301999038562 0.713644699386659 NA NA prediction 0.427289398773317 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12017041 chr1:12017040 nonsynonymous SNV 0.892 4 20 hm7G_associated_SNPs_27282 0 0 1 0 2 PLOD1 chr1:12017071 5'GT 12017071 Upstream 32bp 24815 chr2 232209780 232209780 1 + G A LIHC 232209781 + 232209761 232209801 41 AAGGCCCGTCACCCCCGGCGGCCACAGAAACGGGTACCCAG AAGGCCCGTCACCCCCGGCAGCCACAGAAACGGGTACCCAG < 41bp 0.497394888256187 0.713640037426003 NA NA prediction 0.427280074852007 Functional Gain - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232209781 chr2:232209780 nonsynonymous SNV 0.962 0 20 hm7G_associated_SNPs_27284 0 0 0 0 1 ARMC9 chr2:232209687 3'AG 232209687 Downstream 94bp 24816 chr1 32050855 32050855 1 + C T CESC 32050856 + 32050836 32050876 41 AGCCATGGGTCGGGGCAAGCGCCAGGCCACTGCCCACTGCC AGCCATGGGTCGGGGCAAGTGCCAGGCCACTGCCCACTGCC < 41bp 0.504254421204856 0.717893829223255 NA NA prediction 0.427278816036798 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050856 chr1:32050855 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27285 0 0 1 0 1 TINAGL1 chr1:32050941 5'GT 32050941 Upstream 87bp 24817 chr16 67685396 67685396 1 + G T UCEC 67685397 + 67685377 67685417 41 TTCTGAGACAGGTGGGCGAGGTCTGCCGCCAGGACATCCAG TTCTGAGACAGGTGGGCGATGTCTGCCGCCAGGACATCCAG < 41bp 0.360107096962138 0.71363817034143 NA NA prediction 0.427276340682859 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685397 chr16:67685396 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_27287 0 0 0 0 2 CARMIL2 chr16:67685304 3'AG 67685304 Downstream 93bp 24818 chr16 67685396 67685396 1 + G T UCEC 67685397 + 67685377 67685417 41 TTCTGAGACAGGTGGGCGAGGTCTGCCGCCAGGACATCCAG TTCTGAGACAGGTGGGCGATGTCTGCCGCCAGGACATCCAG < 41bp 0.360107096962138 0.71363817034143 NA NA prediction 0.427276340682859 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685397 chr16:67685396 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_27287 0 0 0 0 2 CARMIL2 chr16:67685417 5'GT 67685417 Upstream 22bp 24819 chr5 148709287 148709287 1 + G T BLCA 148709288 + 148709268 148709308 41 AGGATGCCCGGAGGTACTTGGTAGAAAAAGAGAAGCTGGAG AGGATGCCCGGAGGTACTTTGTAGAAAAAGAGAAGCTGGAG < 41bp 0.687974282727892 0.901604988909845 NA NA prediction 0.427261412363906 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148709288 chr5:148709287 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_27288 0 0 1 0 1 AFAP1L1 chr5:148709229 3'AG 148709229 Downstream 59bp 24820 chr8 41469477 41469477 1 + C T UCEC 41469478 + 41469458 41469498 41 GTGTTACCGGATCTGCGTGCGAGCGCTGACAGCCATCATCA GTGTTACCGGATCTGCGTGTGAGCGCTGACAGCCATCATCA < 41bp 0.515698108702901 0.729311331049421 NA NA prediction 0.42722644469304 Functional Gain - GPAT4 ENSG00000158669 CDS Human protein_coding chr8:41469478 chr8:41469477 stopgain 0.990 1 20 hm7G_associated_SNPs_27291 0 0 1 0 2 GPAT4 chr8:41469422 3'AG 41469422 Downstream 56bp 24821 chr8 41469477 41469477 1 + C T UCEC 41469478 + 41469458 41469498 41 GTGTTACCGGATCTGCGTGCGAGCGCTGACAGCCATCATCA GTGTTACCGGATCTGCGTGTGAGCGCTGACAGCCATCATCA < 41bp 0.515698108702901 0.729311331049421 NA NA prediction 0.42722644469304 Functional Gain - GPAT4 ENSG00000158669 CDS Human protein_coding chr8:41469478 chr8:41469477 stopgain 0.990 1 20 hm7G_associated_SNPs_27291 0 0 1 0 2 GPAT4 chr8:41469511 5'GT 41469511 Upstream 35bp 24822 chr1 248028219 248028219 1 + G A rs946696 248028220 + 248028200 248028240 41 AGGAGAGGTGCCAGCGCCCGGCCCTGGGTCTGCTGGAGGTG AGGAGAGGTGCCAGCGCCCAGCCCTGGGTCTGCTGGAGGTG < 41bp 0.541336965473966 0.754948459964506 NA NA prediction 0.42722298898108 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248028220 chr1:248028219 synonymous SNV . 0 20 hm7G_associated_SNPs_27292 0 0 1 0 1 TRIM58 chr1:248028237 5'GT 248028237 Upstream 19bp 24823 chr1 203682373 203682373 1 + G T LIHC 203682374 + 203682354 203682394 41 CCACTGACAAGCACACCCTGGTGAAAGGTGAGGTTGGCTTC CCACTGACAAGCACACCCTTGTGAAAGGTGAGGTTGGCTTC < 41bp 0.369938617855513 0.713605393299022 NA NA prediction 0.427210786598043 Functional Gain - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203682374 chr1:203682373 synonymous SNV . 0 20 hm7G_associated_SNPs_27295 0 0 1 0 2 ATP2B4 chr1:203682293 3'AG 203682293 Downstream 81bp 24824 chr1 203682373 203682373 1 + G T LIHC 203682374 + 203682354 203682394 41 CCACTGACAAGCACACCCTGGTGAAAGGTGAGGTTGGCTTC CCACTGACAAGCACACCCTTGTGAAAGGTGAGGTTGGCTTC < 41bp 0.369938617855513 0.713605393299022 NA NA prediction 0.427210786598043 Functional Gain - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203682374 chr1:203682373 synonymous SNV . 0 20 hm7G_associated_SNPs_27295 0 0 1 0 2 ATP2B4 chr1:203682380 5'GT 203682380 Upstream 8bp 24825 chr22 24121399 24121399 1 + G A SKCM 24121400 + 24121380 24121420 41 CACCACCTCCATGCCGAGAGGAGGGGGCCACAGCCCTGGCA CACCACCTCCATGCCGAGAAGAGGGGGCCACAGCCCTGGCA < 41bp 0.501785005380585 0.715382460472925 NA NA prediction 0.42719491018468 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24121400 chr22:24121399 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_27302 0 0 1 0 1 MMP11 chr22:24121374 3'AG 24121374 Downstream 26bp 24826 chr3 119531580 119531580 1 + G A UCEC 119531581 + 119531561 119531601 41 AGTTGCCAGAGTCTCTGCAGGCCCCATCGAGGGAAGAAGCT AGTTGCCAGAGTCTCTGCAAGCCCCATCGAGGGAAGAAGCT < 41bp 0.540501779037039 0.754096785891863 NA NA prediction 0.427190013709648 Functional Gain - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119531581 chr3:119531580 synonymous SNV . 0 20 hm7G_associated_SNPs_27303 0 0 0 0 1 NR1I2 chr3:119531533 3'AG 119531533 Downstream 48bp 24827 chr1 110168976 110168976 1 + G A UCEC 110168977 + 110168957 110168997 41 GGTGAGGGGCAGGGTGACCGGAGCCTGCGGGAGCGTGATGT GGTGAGGGGCAGGGTGACCAGAGCCTGCGGGAGCGTGATGT < 41bp 0.521171339354718 0.734765602591197 NA NA prediction 0.427188526472959 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168977 chr1:110168976 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_27304 0 0 1 0 2 AMPD2 chr1:110168941 3'AG 110168941 Downstream 36bp 24828 chr1 110168976 110168976 1 + G A UCEC 110168977 + 110168957 110168997 41 GGTGAGGGGCAGGGTGACCGGAGCCTGCGGGAGCGTGATGT GGTGAGGGGCAGGGTGACCAGAGCCTGCGGGAGCGTGATGT < 41bp 0.521171339354718 0.734765602591197 NA NA prediction 0.427188526472959 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168977 chr1:110168976 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_27304 0 0 1 0 2 AMPD2 chr1:110169049 5'GT 110169049 Upstream 74bp 24829 chr19 58926931 58926931 1 + G T STAD 58926932 + 58926912 58926952 41 CTGTGTTTACCCAGCTGGAGGATGATGAACAGTCGTGGGTG CTGTGTTTACCCAGCTGGATGATGATGAACAGTCGTGGGTG < 41bp 0.69024669455958 0.903836308318276 NA NA prediction 0.427179227517392 Functional Gain - ZNF584 ENSG00000171574 CDS Human protein_coding chr19:58926932 chr19:58926931 nonsynonymous SNV 0.012 2 20 hm7G_associated_SNPs_27305 0 0 1 0 2 ZNF584 chr19:58926891 3'AG 58926891 Downstream 41bp 24830 chr19 58926931 58926931 1 + G T STAD 58926932 + 58926912 58926952 41 CTGTGTTTACCCAGCTGGAGGATGATGAACAGTCGTGGGTG CTGTGTTTACCCAGCTGGATGATGATGAACAGTCGTGGGTG < 41bp 0.69024669455958 0.903836308318276 NA NA prediction 0.427179227517392 Functional Gain - ZNF584 ENSG00000171574 CDS Human protein_coding chr19:58926932 chr19:58926931 nonsynonymous SNV 0.012 2 20 hm7G_associated_SNPs_27305 0 0 1 0 2 ZNF584 chr19:58927013 5'GT 58927013 Upstream 83bp 24831 chr1 153745160 153745160 1 + C T UCEC 153745161 + 153745141 153745181 41 GCGCTGCAGCATGTCCAAGCGAGCTGTGACGAAGCCCACAA GCGCTGCAGCATGTCCAAGTGAGCTGTGACGAAGCCCACAA < 41bp 0.500207416303576 0.713791087146095 NA NA prediction 0.427167341685038 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153745161 chr1:153745160 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_27306 0 0 1 0 2 INTS3 chr1:153745115 3'AG 153745115 Downstream 46bp 24832 chr1 153745160 153745160 1 + C T UCEC 153745161 + 153745141 153745181 41 GCGCTGCAGCATGTCCAAGCGAGCTGTGACGAAGCCCACAA GCGCTGCAGCATGTCCAAGTGAGCTGTGACGAAGCCCACAA < 41bp 0.500207416303576 0.713791087146095 NA NA prediction 0.427167341685038 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153745161 chr1:153745160 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_27306 0 0 1 0 2 INTS3 chr1:153745187 5'GT 153745187 Upstream 28bp 24833 chr1 231410999 231410999 1 + G T UCEC 231411000 + 231410980 231411020 41 ACCTTTTGAGTGAAGAAGAGGACCACTTCAGTGAGGAACAG ACCTTTTGAGTGAAGAAGATGACCACTTCAGTGAGGAACAG < 41bp 0.682457401895527 0.896033339555082 NA NA prediction 0.427151875319109 Functional Gain - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231411000 chr1:231410999 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_27309 0 0 1 0 2 GNPAT chr1:231410967 3'AG 231410967 Downstream 33bp 24834 chr1 231410999 231410999 1 + G T UCEC 231411000 + 231410980 231411020 41 ACCTTTTGAGTGAAGAAGAGGACCACTTCAGTGAGGAACAG ACCTTTTGAGTGAAGAAGATGACCACTTCAGTGAGGAACAG < 41bp 0.682457401895527 0.896033339555082 NA NA prediction 0.427151875319109 Functional Gain - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231411000 chr1:231410999 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_27309 0 0 1 0 2 GNPAT chr1:231411066 5'GT 231411066 Upstream 68bp 24835 chr20 25228991 25228991 1 + G A SKCM 25228992 + 25228972 25229012 41 TCTTCGCGCTGGCGCACACGGTGCGCGACCACCTCGTGGGC TCTTCGCGCTGGCGCACACAGTGCGCGACCACCTCGTGGGC < 41bp 0.5008685896596 0.714440059145882 NA NA prediction 0.427142938972564 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25228992 chr20:25228991 synonymous SNV . 0 20 hm7G_associated_SNPs_27310 0 0 1 0 1 PYGB chr20:25229057 5'GT 25229057 Upstream 67bp 24836 chr17 4436305 4436305 1 + G A PAAD 4436306 + 4436286 4436326 41 TCTCCTCCCTGGCCACGTCGGCTGTCTCCTTCGCCACGGGG TCTCCTCCCTGGCCACGTCAGCTGTCTCCTTCGCCACGGGG < 41bp 0.483536750528807 0.713560203011048 NA NA prediction 0.427120406022095 Functional Gain - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4436306 chr17:4436305 synonymous SNV . 0 20 hm7G_associated_SNPs_27313 0 0 0 0 1 SPNS2 chr17:4436272 3'AG 4436272 Downstream 34bp 24837 chr8 145618043 145618043 1 + G A UCEC 145618044 + 145618024 145618064 41 CACGTATCGGGGTGTCTACGGCACCAGCCTCCTGCGCCACG CACGTATCGGGGTGTCTACAGCACCAGCCTCCTGCGCCACG < 41bp 0.537540084390486 0.751099855170428 NA NA prediction 0.427119541559883 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145618044 chr8:145618043 nonsynonymous SNV 0.058 0 20 hm7G_associated_SNPs_27314 0 0 1 0 2 ADCK5 chr8:145617991 3'AG 145617991 Downstream 53bp 24838 chr8 145618043 145618043 1 + G A UCEC 145618044 + 145618024 145618064 41 CACGTATCGGGGTGTCTACGGCACCAGCCTCCTGCGCCACG CACGTATCGGGGTGTCTACAGCACCAGCCTCCTGCGCCACG < 41bp 0.537540084390486 0.751099855170428 NA NA prediction 0.427119541559883 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145618044 chr8:145618043 nonsynonymous SNV 0.058 0 20 hm7G_associated_SNPs_27314 0 0 1 0 2 ADCK5 chr8:145618107 5'GT 145618107 Upstream 65bp 24839 chr13 113487316 113487316 1 + C T rs151067179 113487317 + 113487297 113487337 41 TCCTCGCCCGACGAGGTGGCGCTGGTCGAAGGTGTCCAGAG TCCTCGCCCGACGAGGTGGTGCTGGTCGAAGGTGTCCAGAG < 41bp 0.502454564468665 0.716012944681235 NA NA prediction 0.42711676042514 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487317 chr13:113487316 nonsynonymous SNV 0.971 5 20 hm7G_associated_SNPs_27315 0 0 1 0 1 ATP11A chr13:113487337 5'GT 113487337 Upstream 22bp 24840 chr17 61607834 61607834 1 + G A SKCM 61607835 + 61607815 61607855 41 ACCGCTCCAGCTCCACCACGGAGATTGAGATCATCGCGCCC ACCGCTCCAGCTCCACCACAGAGATTGAGATCATCGCGCCC < 41bp 0.504262495986421 0.717807556465336 NA NA prediction 0.42709012095783 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61607835 chr17:61607834 synonymous SNV . 0 20 hm7G_associated_SNPs_27318 0 0 0 0 1 KCNH6 chr17:61607903 5'GT 61607903 Upstream 70bp 24841 chr16 3014524 3014524 1 + G A PRAD 3014525 + 3014505 3014545 41 ATCCTTGGTTGAGAGCGATGGGGACACAAGCCCTGCAGGGC ATCCTTGGTTGAGAGCGATAGGGACACAAGCCCTGCAGGGC < 41bp 0.525916167299241 0.739455351050542 NA NA prediction 0.427078367502601 Functional Gain - KREMEN2 ENSG00000131650 CDS Human protein_coding chr16:3014525 chr16:3014524 nonsynonymous SNV 0.418 1 20 hm7G_associated_SNPs_27322 0 0 0 0 1 KREMEN2 chr16:3014615 5'GT 3014615 Upstream 92bp 24842 chr1 32742032 32742032 1 + G A SKCM 32742033 + 32742013 32742053 41 ACGAGTGGGAGGTTCCCAGGGAGACGCTGAAGCTGGTGGAG ACGAGTGGGAGGTTCCCAGAGAGACGCTGAAGCTGGTGGAG < 41bp 0.520548258445952 0.73408448945031 NA NA prediction 0.427072462008717 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32742033 chr1:32742032 synonymous SNV . 0 20 hm7G_associated_SNPs_27323 0 0 0 0 2 LCK chr1:32741938 3'AG 32741938 Downstream 95bp 24843 chr1 32742032 32742032 1 + G A SKCM 32742033 + 32742013 32742053 41 ACGAGTGGGAGGTTCCCAGGGAGACGCTGAAGCTGGTGGAG ACGAGTGGGAGGTTCCCAGAGAGACGCTGAAGCTGGTGGAG < 41bp 0.520548258445952 0.73408448945031 NA NA prediction 0.427072462008717 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32742033 chr1:32742032 synonymous SNV . 0 20 hm7G_associated_SNPs_27323 0 0 0 0 2 LCK chr1:32742090 5'GT 32742090 Upstream 59bp 24844 chr9 26978171 26978171 1 + G T UCEC 26978172 + 26978152 26978192 41 TTCTCGTGGTTGTCCCATAGGGACTGGTGGAGTTCTGTCTT TTCTCGTGGTTGTCCCATATGGACTGGTGGAGTTCTGTCTT < 41bp 0.686941080606727 0.900475255054681 NA NA prediction 0.427068348895908 Functional Gain - IFT74 ENSG00000096872 CDS Human protein_coding chr9:26978172 chr9:26978171 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_27324 0 0 1 0 2 IFT74 chr9:26978126 3'AG 26978126 Downstream 46bp 24845 chr9 26978171 26978171 1 + G T UCEC 26978172 + 26978152 26978192 41 TTCTCGTGGTTGTCCCATAGGGACTGGTGGAGTTCTGTCTT TTCTCGTGGTTGTCCCATATGGACTGGTGGAGTTCTGTCTT < 41bp 0.686941080606727 0.900475255054681 NA NA prediction 0.427068348895908 Functional Gain - IFT74 ENSG00000096872 CDS Human protein_coding chr9:26978172 chr9:26978171 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_27324 0 0 1 0 2 IFT74 chr9:26978261 5'GT 26978261 Upstream 91bp 24846 chr18 12971218 12971218 1 + G T PCPG 12971219 + 12971199 12971239 41 GCCCCAACGCAATGGCCAAGGTTCAGATTTTTGAATATAAT GCCCCAACGCAATGGCCAATGTTCAGATTTTTGAATATAAT < 41bp 0.3848513747442 0.713525105016028 NA NA prediction 0.427050210032055 Functional Gain - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12971219 chr18:12971218 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27327 0 0 1 0 2 SEH1L chr18:12971152 3'AG 12971152 Downstream 67bp 24847 chr18 12971218 12971218 1 + G T PCPG 12971219 + 12971199 12971239 41 GCCCCAACGCAATGGCCAAGGTTCAGATTTTTGAATATAAT GCCCCAACGCAATGGCCAATGTTCAGATTTTTGAATATAAT < 41bp 0.3848513747442 0.713525105016028 NA NA prediction 0.427050210032055 Functional Gain - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12971219 chr18:12971218 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27327 0 0 1 0 2 SEH1L chr18:12971250 5'GT 12971250 Upstream 33bp 24848 chr9 138439026 138439026 1 + G A rs566194944 138439027 + 138439007 138439047 41 TGTCTCCTGTTTTCCAGGAGGGAGGATCGGTGCATCCAGAA TGTCTCCTGTTTTCCAGGAAGGAGGATCGGTGCATCCAGAA < 41bp 0.497228948698201 0.713522380844474 NA NA prediction 0.427044761688948 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439027 chr9:138439026 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_27329 0 0 0 0 2 OBP2A chr9:138439024 3'AG 138439024 Downstream 3bp 24849 chr9 138439026 138439026 1 + G A rs566194944 138439027 + 138439007 138439047 41 TGTCTCCTGTTTTCCAGGAGGGAGGATCGGTGCATCCAGAA TGTCTCCTGTTTTCCAGGAAGGAGGATCGGTGCATCCAGAA < 41bp 0.497228948698201 0.713522380844474 NA NA prediction 0.427044761688948 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439027 chr9:138439026 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_27329 0 0 0 0 2 OBP2A chr9:138439094 5'GT 138439094 Upstream 69bp 24850 chr1 1116189 1116189 1 + G A rs137938349 1116190 + 1116170 1116210 41 CTCAGCACCCTTCGGGGACGGGCACGGGCCATGAGCAAGGC CTCAGCACCCTTCGGGGACAGGCACGGGCCATGAGCAAGGC < 41bp 0.55953632726357 0.773048596069014 NA NA prediction 0.427024537610888 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1116190 chr1:1116189 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_27332 0 0 0 0 2 TTLL10 chr1:1116111 3'AG 1116111 Downstream 79bp 24851 chr1 1116189 1116189 1 + G A rs137938349 1116190 + 1116170 1116210 41 CTCAGCACCCTTCGGGGACGGGCACGGGCCATGAGCAAGGC CTCAGCACCCTTCGGGGACAGGCACGGGCCATGAGCAAGGC < 41bp 0.55953632726357 0.773048596069014 NA NA prediction 0.427024537610888 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1116190 chr1:1116189 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_27332 0 0 0 0 2 TTLL10 chr1:1116240 5'GT 1116240 Upstream 52bp 24852 chr4 17832679 17832679 1 + G T SARC 17832680 + 17832660 17832700 41 ACCTGGCTGTTTTATGCTTGGGATGCTGTGGACTACAGAAT ACCTGGCTGTTTTATGCTTTGGATGCTGTGGACTACAGAAT < 41bp 0.685048358865236 0.898559660792132 NA NA prediction 0.427022603853792 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17832680 chr4:17832679 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_27333 0 0 1 0 2 NCAPG chr4:17832620 3'AG 17832620 Downstream 60bp 24853 chr4 17832679 17832679 1 + G T SARC 17832680 + 17832660 17832700 41 ACCTGGCTGTTTTATGCTTGGGATGCTGTGGACTACAGAAT ACCTGGCTGTTTTATGCTTTGGATGCTGTGGACTACAGAAT < 41bp 0.685048358865236 0.898559660792132 NA NA prediction 0.427022603853792 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17832680 chr4:17832679 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_27333 0 0 1 0 2 NCAPG chr4:17832739 5'GT 17832739 Upstream 61bp 24854 chr1 160385889 160385889 1 + G T LUAD 160385890 + 160385870 160385910 41 CCGCTCTAAGAGTCGAGATGGGGGCCGAGGGGACAAGTCGG CCGCTCTAAGAGTCGAGATTGGGGCCGAGGGGACAAGTCGG < 41bp 0.694993956583393 0.908504972588013 NA NA prediction 0.42702203200924 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385890 chr1:160385889 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_27334 0 0 0 0 2 VANGL2 chr1:160385852 3'AG 160385852 Downstream 38bp 24855 chr1 160385889 160385889 1 + G T LUAD 160385890 + 160385870 160385910 41 CCGCTCTAAGAGTCGAGATGGGGGCCGAGGGGACAAGTCGG CCGCTCTAAGAGTCGAGATTGGGGCCGAGGGGACAAGTCGG < 41bp 0.694993956583393 0.908504972588013 NA NA prediction 0.42702203200924 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385890 chr1:160385889 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_27334 0 0 0 0 2 VANGL2 chr1:160385972 5'GT 160385972 Upstream 84bp 24856 chr15 45437125 45437125 1 + G A GBM 45437126 + 45437106 45437146 41 ACTTGGAGGAAGAGCGGCAGGCGCTGGTGGAAAATCTCCGG ACTTGGAGGAAGAGCGGCAAGCGCTGGTGGAAAATCTCCGG < 41bp 0.54529804105937 0.758806875557324 NA NA prediction 0.427017668995908 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45437126 chr15:45437125 synonymous SNV . 0 20 hm7G_associated_SNPs_27336 0 0 0 0 1 DUOX1 chr15:45437093 3'AG 45437093 Downstream 33bp 24857 chr5 157161725 157161725 1 + G T LGG 157161726 + 157161706 157161746 41 CCAGCAACCAGACTTTAAAGGACTACCTCAGCTGGCGACAA CCAGCAACCAGACTTTAAATGACTACCTCAGCTGGCGACAA < 41bp 0.690294745541549 0.903800689942675 NA NA prediction 0.427011888802254 Functional Gain - THG1L ENSG00000113272;ENSG00000268432 CDS Human other chr5:157161726 chr5:157161725 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27337 0 0 1 0 2 THG1L chr5:157161679 3'AG 157161679 Downstream 47bp 24858 chr5 157161725 157161725 1 + G T LGG 157161726 + 157161706 157161746 41 CCAGCAACCAGACTTTAAAGGACTACCTCAGCTGGCGACAA CCAGCAACCAGACTTTAAATGACTACCTCAGCTGGCGACAA < 41bp 0.690294745541549 0.903800689942675 NA NA prediction 0.427011888802254 Functional Gain - THG1L ENSG00000113272;ENSG00000268432 CDS Human protein_coding chr5:157161726 chr5:157161725 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27337 0 0 1 0 2 THG1L chr5:157161753 5'GT 157161753 Upstream 29bp 24859 chr2 234858740 234858740 1 + C T COAD 234858741 + 234858721 234858761 41 GCTGGTGCGCTTTTTACCCCGCACGGTGTCCCGGCTGCCTG GCTGGTGCGCTTTTTACCCTGCACGGTGTCCCGGCTGCCTG < 41bp 0.50845469299485 0.721959275059793 NA NA prediction 0.427009164129886 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234858741 chr2:234858740 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_27338 0 0 0 0 1 TRPM8 chr2:234858790 5'GT 234858790 Upstream 51bp 24860 chr1 153749125 153749125 1 + G A LIHC 153749126 + 153749106 153749146 41 AGTGTCCGCTGAAGTGGATGGGCCAGTGCCAGGATACCTCT AGTGTCCGCTGAAGTGGATAGGCCAGTGCCAGGATACCTCT < 41bp 0.550950839708759 0.764455049887876 NA NA prediction 0.427008420358236 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153749126 chr1:153749125 nonsynonymous SNV 0.547 0 20 hm7G_associated_SNPs_27339 0 0 0 0 1 SLC27A3 chr1:153749203 5'GT 153749203 Upstream 79bp 24861 chr1 114450783 114450783 1 + C T UCEC 114450784 + 114450764 114450804 41 CCAGATTGTCCAGCTCATTCGAAAACACCCACAACATAACA CCAGATTGTCCAGCTCATTTGAAAACACCCACAACATAACA < 41bp 0.507167805759547 0.720670512238377 NA NA prediction 0.427005412957659 Functional Gain - DCLRE1B ENSG00000118655 CDS Human protein_coding chr1:114450784 chr1:114450783 stopgain 0.910 1 20 hm7G_associated_SNPs_27340 0 0 0 0 1 DCLRE1B chr1:114450813 5'GT 114450813 Upstream 31bp 24862 chr20 30616912 30616912 1 + G T SARC 30616913 + 30616893 30616933 41 TGGGCTTGGAGCAGTTACAGGATTACATGGTCACGGTGAGC TGGGCTTGGAGCAGTTACATGATTACATGGTCACGGTGAGC < 41bp 0.692774987635074 0.9062715714401 NA NA prediction 0.426993167610052 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30616913 chr20:30616912 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_27343 0 0 0 0 1 CCM2L chr20:30616927 5'GT 30616927 Upstream 16bp 24863 chr2 27303657 27303657 1 + G A LUAD 27303658 + 27303638 27303678 41 ACAAGACAGTGACCGACATGGAGTGGAGGTGCTGTCAGGGT ACAAGACAGTGACCGACATAGAGTGGAGGTGCTGTCAGGGT < 41bp 0.498296116760407 0.713495858038518 NA NA prediction 0.426991716077035 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27303658 chr2:27303657 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_27344 0 0 0 0 1 EMILIN1 chr2:27303600 3'AG 27303600 Downstream 58bp 24864 chr9 139929124 139929124 1 + G A STAD 139929125 + 139929105 139929145 41 CCCGGCGGCAGTTCCTGCAGGAAGGAGGCTGTCCTGCCACG CCCGGCGGCAGTTCCTGCAAGAAGGAGGCTGTCCTGCCACG < 41bp 0.533235806287613 0.746727596875384 NA NA prediction 0.426983581175541 Functional Gain - C9orf139 ENSG00000180539 CDS Human antisense chr9:139929125 chr9:139929124 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27345 0 0 0 0 1 C9orf139 chr9:139929102 3'AG 139929102 Downstream 23bp 24865 chr11 126278289 126278289 1 + C T UCEC 126278290 + 126278270 126278310 41 ACCCTGAATCTGCCCACTTCGACCCCAAAGTAGAAAACAAC ACCCTGAATCTGCCCACTTTGACCCCAAAGTAGAAAACAAC < 41bp 0.499220580536411 0.713487984438613 NA NA prediction 0.426975968877225 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126278290 chr11:126278289 synonymous SNV . 0 20 hm7G_associated_SNPs_27348 0 0 0 0 1 ST3GAL4 chr11:126278202 3'AG 126278202 Downstream 88bp 24866 chr7 128845470 128845470 1 + G A STAD 128845471 + 128845451 128845491 41 GCCACATTCGTGGCTGACTGGCGGAACTCGAATCGCTACCC GCCACATTCGTGGCTGACTAGCGGAACTCGAATCGCTACCC < 41bp 0.498663366662215 0.713480836816064 NA NA prediction 0.426961673632127 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128845471 chr7:128845470 stopgain 1.000 1 20 hm7G_associated_SNPs_27350 0 0 1 0 1 SMO chr7:128845451 3'AG 128845451 Downstream 20bp 24867 chr12 49719373 49719373 1 + C T rs116282192 49719374 + 49719354 49719394 41 GAAGAGCTGTCACCTGGGGCGCCAGCCTAGTCTGGCTAAAA GAAGAGCTGTCACCTGGGGTGCCAGCCTAGTCTGGCTAAAA < 41bp 0.51258684678356 0.72606653306288 NA NA prediction 0.42695937255864 Functional Gain - TROAP ENSG00000135451 CDS Human protein_coding chr12:49719374 chr12:49719373 nonsynonymous SNV 0.077 1 20 hm7G_associated_SNPs_27351 0 0 1 0 2 TROAP chr12:49719284 3'AG 49719284 Downstream 90bp 24868 chr12 49719373 49719373 1 + C T rs116282192 49719374 + 49719354 49719394 41 GAAGAGCTGTCACCTGGGGCGCCAGCCTAGTCTGGCTAAAA GAAGAGCTGTCACCTGGGGTGCCAGCCTAGTCTGGCTAAAA < 41bp 0.51258684678356 0.72606653306288 NA NA prediction 0.42695937255864 Functional Gain - TROAP ENSG00000135451 CDS Human protein_coding chr12:49719374 chr12:49719373 nonsynonymous SNV 0.077 1 20 hm7G_associated_SNPs_27351 0 0 1 0 2 TROAP chr12:49719441 5'GT 49719441 Upstream 69bp 24869 chr17 8218509 8218509 1 + C T BLCA 8218510 + 8218490 8218530 41 CCCACGACCCCCTGGACCTCGCAACACCCTGTGGCAGGAGC CCCACGACCCCCTGGACCTTGCAACACCCTGTGGCAGGAGC < 41bp 0.502334003698445 0.715813301103092 NA NA prediction 0.426958594809294 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8218510 chr17:8218509 nonsynonymous SNV 0.918 4 20 hm7G_associated_SNPs_27352 0 0 0 0 1 ARHGEF15 chr17:8218595 5'GT 8218595 Upstream 87bp 24870 chr11 124955341 124955341 1 + G A rs183531018 124955342 + 124955322 124955362 41 AAGCCCTGTCCACGGTCACGGCCATCATTGACGGCACCGGC AAGCCCTGTCCACGGTCACAGCCATCATTGACGGCACCGGC < 41bp 0.501708860171042 0.715186217973168 NA NA prediction 0.426954715604252 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955342 chr11:124955341 synonymous SNV . 0 20 hm7G_associated_SNPs_27354 0 0 0 0 2 SLC37A2 chr11:124955291 3'AG 124955291 Downstream 51bp 24871 chr11 124955341 124955341 1 + G A rs183531018 124955342 + 124955322 124955362 41 AAGCCCTGTCCACGGTCACGGCCATCATTGACGGCACCGGC AAGCCCTGTCCACGGTCACAGCCATCATTGACGGCACCGGC < 41bp 0.501708860171042 0.715186217973168 NA NA prediction 0.426954715604252 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955342 chr11:124955341 synonymous SNV . 0 20 hm7G_associated_SNPs_27354 0 0 0 0 2 SLC37A2 chr11:124955369 5'GT 124955369 Upstream 29bp 24872 chr12 41408059 41408059 1 + G T UCEC 41408060 + 41408040 41408080 41 GGCTCCTTCAGATGTAGGAGGTGGAGGTGGAAGAAACAGAG GGCTCCTTCAGATGTAGGATGTGGAGGTGGAAGAAACAGAG < 41bp 0.3945559147352 0.713475779846769 NA NA prediction 0.426951559693537 Functional Gain - CNTN1 ENSG00000018236 CDS Human protein_coding chr12:41408060 chr12:41408059 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27355 0 0 0 0 2 CNTN1 chr12:41408030 3'AG 41408030 Downstream 30bp 24873 chr12 41408059 41408059 1 + G T UCEC 41408060 + 41408040 41408080 41 GGCTCCTTCAGATGTAGGAGGTGGAGGTGGAAGAAACAGAG GGCTCCTTCAGATGTAGGATGTGGAGGTGGAAGAAACAGAG < 41bp 0.3945559147352 0.713475779846769 NA NA prediction 0.426951559693537 Functional Gain - CNTN1 ENSG00000018236 CDS Human protein_coding chr12:41408060 chr12:41408059 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27355 0 0 0 0 2 CNTN1 chr12:41408100 5'GT 41408100 Upstream 42bp 24874 chr15 91450664 91450664 1 + C T UCEC 91450665 + 91450645 91450685 41 CAAACGCCTGCCTGGTGGGCGCATCAACTGCCCTTGGAAGG CAAACGCCTGCCTGGTGGGTGCATCAACTGCCCTTGGAAGG < 41bp 0.505157559380405 0.718630428667814 NA NA prediction 0.426945738574817 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91450665 chr15:91450664 nonsynonymous SNV 0.920 4 20 hm7G_associated_SNPs_27356 0 0 1 0 1 MAN2A2 chr15:91450725 5'GT 91450725 Upstream 62bp 24875 chr7 74114664 74114664 1 + C T PAAD 74114665 + 74114645 74114685 41 GTGGTAGTGCAGGGGCTTCCGGAAGGTGTTGCCTTTAAACA GTGGTAGTGCAGGGGCTTCTGGAAGGTGTTGCCTTTAAACA < 41bp 0.512322355333635 0.725792836485531 NA NA prediction 0.426940962303792 Functional Gain - GTF2I ENSG00000077809 CDS Human other chr7:74114665 chr7:74114664 nonsynonymous SNV 0.513 4 20 hm7G_associated_SNPs_27357 0 0 1 0 2 GTF2I chr7:74114577 3'AG 74114577 Downstream 88bp 24876 chr7 74114664 74114664 1 + C T PAAD 74114665 + 74114645 74114685 41 GTGGTAGTGCAGGGGCTTCCGGAAGGTGTTGCCTTTAAACA GTGGTAGTGCAGGGGCTTCTGGAAGGTGTTGCCTTTAAACA < 41bp 0.512322355333635 0.725792836485531 NA NA prediction 0.426940962303792 Functional Gain - GTF2I ENSG00000077809 CDS Human other chr7:74114665 chr7:74114664 nonsynonymous SNV 0.513 4 20 hm7G_associated_SNPs_27357 0 0 1 0 2 GTF2I chr7:74114760 5'GT 74114760 Upstream 97bp 24877 chr15 45440548 45440548 1 + G T THCA 45440549 + 45440529 45440569 41 AGTCCATGTTCCGGGAGTCGGGATTCCAGGACAAGGAGGAA AGTCCATGTTCCGGGAGTCTGGATTCCAGGACAAGGAGGAA < 41bp 0.697601664245418 0.911069772651228 NA NA prediction 0.426936216811621 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45440549 chr15:45440548 synonymous SNV . 0 20 hm7G_associated_SNPs_27358 0 0 0 0 2 DUOX1 chr15:45440470 3'AG 45440470 Downstream 79bp 24878 chr15 45440548 45440548 1 + G T THCA 45440549 + 45440529 45440569 41 AGTCCATGTTCCGGGAGTCGGGATTCCAGGACAAGGAGGAA AGTCCATGTTCCGGGAGTCTGGATTCCAGGACAAGGAGGAA < 41bp 0.697601664245418 0.911069772651228 NA NA prediction 0.426936216811621 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45440549 chr15:45440548 synonymous SNV . 0 20 hm7G_associated_SNPs_27358 0 0 0 0 2 DUOX1 chr15:45440645 5'GT 45440645 Upstream 98bp 24879 chr16 30768210 30768210 1 + G T UCEC 30768211 + 30768191 30768231 41 ACCAAGAATGCACTGTTGAGGGACCCTTATGCGCTGCGGTC ACCAAGAATGCACTGTTGATGGACCCTTATGCGCTGCGGTC < 41bp 0.361433836412738 0.713459695975464 NA NA prediction 0.426919391950929 Functional Gain - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30768211 chr16:30768210 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_27359 0 0 1 0 2 PHKG2 chr16:30768125 3'AG 30768125 Downstream 86bp 24880 chr16 30768210 30768210 1 + G T UCEC 30768211 + 30768191 30768231 41 ACCAAGAATGCACTGTTGAGGGACCCTTATGCGCTGCGGTC ACCAAGAATGCACTGTTGATGGACCCTTATGCGCTGCGGTC < 41bp 0.361433836412738 0.713459695975464 NA NA prediction 0.426919391950929 Functional Gain - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30768211 chr16:30768210 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_27359 0 0 1 0 2 PHKG2 chr16:30768280 5'GT 30768280 Upstream 71bp 24881 chr7 780466 780466 1 + C T KIRC 780467 + 780447 780487 41 CATGCGCAGGTCCGGCGGGCGGTGGCCTCCGTGGTGGGCGG CATGCGCAGGTCCGGCGGGTGGTGGCCTCCGTGGTGGGCGG < 41bp 0.508590829018839 0.722047026386374 NA NA prediction 0.426912394735069 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:780467 chr7:780466 nonsynonymous SNV 0.467 2 20 hm7G_associated_SNPs_27360 0 0 1 0 1 DNAAF5 chr7:780456 3'AG 780456 Downstream 11bp 24882 chr16 88772963 88772963 1 + G A rs137933845 88772964 + 88772944 88772984 41 TCAGGTGGGCGAGGACTACGGGGAGCCGGCGCCTGAGGAGC TCAGGTGGGCGAGGACTACAGGGAGCCGGCGCCTGAGGAGC < 41bp 0.475016922973167 0.7134552924935 NA NA prediction 0.426910584987 Functional Gain - CTU2 ENSG00000174177 CDS Human protein_coding chr16:88772964 chr16:88772963 nonsynonymous SNV 0.569 0 20 hm7G_associated_SNPs_27361 0 0 1 0 1 CTU2 chr16:88773006 5'GT 88773006 Upstream 44bp 24883 chr22 25243706 25243706 1 + C T UCEC 25243707 + 25243687 25243727 41 AAAGTGGGCAAGAACTTCCCGCCGGCTGAGGATCTGAGCCG AAAGTGGGCAAGAACTTCCTGCCGGCTGAGGATCTGAGCCG < 41bp 0.516956640546985 0.730409455659482 NA NA prediction 0.426905630224992 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25243707 chr22:25243706 nonsynonymous SNV 0.059 2 20 hm7G_associated_SNPs_27362 0 0 1 0 1 SGSM1 chr22:25243763 5'GT 25243763 Upstream 58bp 24884 chr8 82665420 82665420 1 + G T LUAD 82665421 + 82665401 82665441 41 ACTCACACACCAACACTGAGGTGTTGAGGAACATGGGCTTT ACTCACACACCAACACTGATGTGTTGAGGAACATGGGCTTT < 41bp 0.684541565343608 0.897991996856066 NA NA prediction 0.426900863024914 Functional Gain - CHMP4C ENSG00000164695 CDS Human protein_coding chr8:82665421 chr8:82665420 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_27364 0 0 1 0 1 CHMP4C chr8:82665476 5'GT 82665476 Upstream 57bp 24885 chr15 91483669 91483669 1 + C T LUSC 91483670 + 91483650 91483690 41 ATGCTGGCGGCTCTGCGTACGCTGGTTGGCATTTGCTCTGA ATGCTGGCGGCTCTGCGTATGCTGGTTGGCATTTGCTCTGA < 41bp 0.502706531570367 0.716156229874786 NA NA prediction 0.426899396608837 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91483670 chr15:91483669 nonsynonymous SNV 0.748 4 20 hm7G_associated_SNPs_27365 0 0 1 0 1 UNC45A chr15:91483703 5'GT 91483703 Upstream 35bp 24886 chr19 36369985 36369985 1 + G A rs144442676 36369986 + 36369966 36370006 41 CTCCCTGCAGGCACCAGCTGGGACAGGGGTGTCCCGTGAGG CTCCCTGCAGGCACCAGCTAGGACAGGGGTGTCCCGTGAGG < 41bp 0.560384009986016 0.773833564442369 NA NA prediction 0.426899108912705 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36369986 chr19:36369985 nonsynonymous SNV 0.917 3 20 hm7G_associated_SNPs_27366 0 0 0 0 1 APLP1 chr19:36369976 3'AG 36369976 Downstream 10bp 24887 chr11 61505662 61505662 1 + C T HNSC 61505663 + 61505643 61505683 41 GCTCCTGGATGTCCTGCAGCGAAGCACCAAGCCCAAAGTGA GCTCCTGGATGTCCTGCAGTGAAGCACCAAGCCCAAAGTGA < 41bp 0.505296415168774 0.718743127144911 NA NA prediction 0.426893423952274 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505663 chr11:61505662 stopgain 1.000 1 20 hm7G_associated_SNPs_27367 0 0 1 0 2 DAGLA chr11:61505607 3'AG 61505607 Downstream 56bp 24888 chr11 61505662 61505662 1 + C T HNSC 61505663 + 61505643 61505683 41 GCTCCTGGATGTCCTGCAGCGAAGCACCAAGCCCAAAGTGA GCTCCTGGATGTCCTGCAGTGAAGCACCAAGCCCAAAGTGA < 41bp 0.505296415168774 0.718743127144911 NA NA prediction 0.426893423952274 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61505663 chr11:61505662 stopgain 1.000 1 20 hm7G_associated_SNPs_27367 0 0 1 0 2 DAGLA chr11:61505679 5'GT 61505679 Upstream 18bp 24889 chr12 113824829 113824829 1 + G A SKCM 113824830 + 113824810 113824850 41 CTTATGACGGGAGCCCCCGGGCCCAGATCTTCCGGCGGAAC CTTATGACGGGAGCCCCCGAGCCCAGATCTTCCGGCGGAAC < 41bp 0.517290156993976 0.730734102767731 NA NA prediction 0.426887891547511 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113824830 chr12:113824829 synonymous SNV . 0 20 hm7G_associated_SNPs_27369 0 0 1 0 2 PLBD2 chr12:113824742 3'AG 113824742 Downstream 88bp 24890 chr12 113824829 113824829 1 + G A SKCM 113824830 + 113824810 113824850 41 CTTATGACGGGAGCCCCCGGGCCCAGATCTTCCGGCGGAAC CTTATGACGGGAGCCCCCGAGCCCAGATCTTCCGGCGGAAC < 41bp 0.517290156993976 0.730734102767731 NA NA prediction 0.426887891547511 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113824830 chr12:113824829 synonymous SNV . 0 20 hm7G_associated_SNPs_27369 0 0 1 0 2 PLBD2 chr12:113824894 5'GT 113824894 Upstream 66bp 24891 chr1 36367831 36367831 1 + G T LUAD 36367832 + 36367812 36367852 41 CCATTGCCACACCCAATCAGGGTGTCTGGGACATGCGGGGG CCATTGCCACACCCAATCATGGTGTCTGGGACATGCGGGGG < 41bp 0.69729493372858 0.910738384799669 NA NA prediction 0.426886902142178 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36367832 chr1:36367831 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_27370 0 0 1 0 1 AGO1 chr1:36367805 3'AG 36367805 Downstream 27bp 24892 chr17 4060185 4060185 1 + G T LUSC 4060186 + 4060166 4060206 41 TGTGAGCAGAGACTGGATTGGCGTCCCCAGGAAGCTGTATA TGTGAGCAGAGACTGGATTTGCGTCCCCAGGAAGCTGTATA < 41bp 0.684884713835936 0.898326621545536 NA NA prediction 0.426883815419201 Functional Gain - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4060186 chr17:4060185 nonsynonymous SNV 0.884 4 20 hm7G_associated_SNPs_27371 0 0 0 0 1 CYB5D2 chr17:4060160 3'AG 4060160 Downstream 26bp 24893 chr1 147084929 147084929 1 + C T PRAD 147084930 + 147084910 147084950 41 GGGCAAGGGGAAAAGGGAGCGAAGTATTTCCGCCGACTCCT GGGCAAGGGGAAAAGGGAGTGAAGTATTTCCGCCGACTCCT < 41bp 0.509571155052769 0.723012890364141 NA NA prediction 0.426883470622743 Functional Gain - BCL9 ENSG00000116128 CDS Human protein_coding chr1:147084930 chr1:147084929 stopgain 1.000 1 20 hm7G_associated_SNPs_27372 0 0 1 0 1 BCL9 chr1:147084998 5'GT 147084998 Upstream 70bp 24894 chr19 10398492 10398492 1 + G A STAD 10398493 + 10398473 10398513 41 TGGTGGTCCGCAACAGCTCGGCACCCATTACACTGATGCTC TGGTGGTCCGCAACAGCTCAGCACCCATTACACTGATGCTC < 41bp 0.497758764274676 0.713432953130027 NA NA prediction 0.426865906260054 Functional Gain - ICAM4 ENSG00000105371 CDS Human protein_coding chr19:10398493 chr19:10398492 nonsynonymous SNV 0.942 1 20 hm7G_associated_SNPs_27374 0 0 0 0 1 ICAM4 chr19:10398514 5'GT 10398514 Upstream 23bp 24895 chr19 7615521 7615521 1 + G A CESC 7615522 + 7615502 7615542 41 CGGCCGCGGCGACCTCATCGGCGTGGTGAGCGCGACCCCCA CGGCCGCGGCGACCTCATCAGCGTGGTGAGCGCGACCCCCA < 41bp 0.528386311363426 0.741818263914406 NA NA prediction 0.42686390510196 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7615522 chr19:7615521 nonsynonymous SNV 0.559 5 20 hm7G_associated_SNPs_27375 0 0 0 0 1 PNPLA6 chr19:7615526 5'GT 7615526 Upstream 6bp 24896 chr14 100402649 100402649 1 + C T GBM 100402650 + 100402630 100402670 41 AGTTCCTCGTGTCAAATTCCGGAGACTACGAAATCCTCTAC AGTTCCTCGTGTCAAATTCTGGAGACTACGAAATCCTCTAC < 41bp 0.501557439251444 0.714983409508455 NA NA prediction 0.426851940514021 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100402650 chr14:100402649 synonymous SNV . 0 20 hm7G_associated_SNPs_27376 0 0 0 0 1 EML1 chr14:100402671 5'GT 100402671 Upstream 23bp 24897 chr17 61601685 61601685 1 + G A SKCM 61601686 + 61601666 61601706 41 CCTAGCGCAGGCCCTGCTGGGGGCTGAGGAGTGCAAGGTGG CCTAGCGCAGGCCCTGCTGAGGGCTGAGGAGTGCAAGGTGG < 41bp 0.557066998314037 0.770490031521722 NA NA prediction 0.42684606641537 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601686 chr17:61601685 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_27378 0 0 0 0 1 KCNH6 chr17:61601730 5'GT 61601730 Upstream 46bp 24898 chr9 136333115 136333115 1 + G A KIRP 136333116 + 136333096 136333136 41 ACGCCATCGCCTTTGCTACGGGGGTGCTGTACGGACTCTCT ACGCCATCGCCTTTGCTACAGGGGTGCTGTACGGACTCTCT < 41bp 0.495629954629657 0.713421370872826 NA NA prediction 0.426842741745652 Functional Gain - CACFD1 ENSG00000160325 CDS Human protein_coding chr9:136333116 chr9:136333115 synonymous SNV . 0 20 hm7G_associated_SNPs_27380 0 0 1 0 2 CACFD1 chr9:136333043 3'AG 136333043 Downstream 73bp 24899 chr9 136333115 136333115 1 + G A KIRP 136333116 + 136333096 136333136 41 ACGCCATCGCCTTTGCTACGGGGGTGCTGTACGGACTCTCT ACGCCATCGCCTTTGCTACAGGGGTGCTGTACGGACTCTCT < 41bp 0.495629954629657 0.713421370872826 NA NA prediction 0.426842741745652 Functional Gain - CACFD1 ENSG00000160325 CDS Human protein_coding chr9:136333116 chr9:136333115 synonymous SNV . 0 20 hm7G_associated_SNPs_27380 0 0 1 0 2 CACFD1 chr9:136333150 5'GT 136333150 Upstream 36bp 24900 chr14 104640107 104640107 1 + G A SKCM 104640108 + 104640088 104640128 41 GTGAGGCGGCGGCTGGCAGGGCCGGGGAGGCTGCTGGGGGT GTGAGGCGGCGGCTGGCAGAGCCGGGGAGGCTGCTGGGGGT < 41bp 0.540303077039324 0.753724435559828 NA NA prediction 0.426842717041008 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104640108 chr14:104640107 synonymous SNV . 0 20 hm7G_associated_SNPs_27381 0 0 0 0 1 KIF26A chr14:104640205 5'GT 104640205 Upstream 99bp 24901 chrX 79281214 79281214 1 + C T UCEC 79281215 + 79281195 79281235 41 CTCGGGAGAGACCTGGATGCGGCAGATCATCAGCTTTGATC CTCGGGAGAGACCTGGATGTGGCAGATCATCAGCTTTGATC < 41bp 0.507556201727816 0.720977493182408 NA NA prediction 0.426842582909184 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79281215 chrX:79281214 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_27382 0 0 0 0 1 TBX22 chrX:79281276 5'GT 79281276 Upstream 63bp 24902 chr19 18245764 18245764 1 + C T rs55633228 18245765 + 18245745 18245785 41 CTTTCTTTGGAGATACCCCCGAGGAACTCTTCGGTCAGGTG CTTTCTTTGGAGATACCCCTGAGGAACTCTTCGGTCAGGTG < 41bp 0.509859145054369 0.723265345825566 NA NA prediction 0.426812401542395 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18245765 chr19:18245764 synonymous SNV . 0 20 hm7G_associated_SNPs_27383 0 0 0 0 1 MAST3 chr19:18245792 5'GT 18245792 Upstream 29bp 24903 chr17 7402445 7402445 1 + C T STAD 7402446 + 7402426 7402466 41 CATGATGGGGCATCGGGTCCGCATTCTCCCATGGTCTACCT CATGATGGGGCATCGGGTCTGCATTCTCCCATGGTCTACCT < 41bp 0.495771488200144 0.713404141089865 NA NA prediction 0.426808282179731 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402446 chr17:7402445 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27384 0 0 1 0 2 POLR2A chr17:7402358 3'AG 7402358 Downstream 88bp 24904 chr17 7402445 7402445 1 + C T STAD 7402446 + 7402426 7402466 41 CATGATGGGGCATCGGGTCCGCATTCTCCCATGGTCTACCT CATGATGGGGCATCGGGTCTGCATTCTCCCATGGTCTACCT < 41bp 0.495771488200144 0.713404141089865 NA NA prediction 0.426808282179731 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7402446 chr17:7402445 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27384 0 0 1 0 2 POLR2A chr17:7402482 5'GT 7402482 Upstream 38bp 24905 chr1 159015127 159015127 1 + G T UCEC 159015128 + 159015108 159015148 41 AAAATGAATGACTTCATGAGGATGCAGATACTGAAGGAAGG AAAATGAATGACTTCATGATGATGCAGATACTGAAGGAAGG < 41bp 0.405164176076295 0.713404038690465 NA NA prediction 0.42680807738093 Functional Gain - IFI16 ENSG00000163565 CDS Human protein_coding chr1:159015128 chr1:159015127 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_27385 0 0 0 0 1 IFI16 chr1:159015087 3'AG 159015087 Downstream 41bp 24906 chr19 12784082 12784082 1 + G A rs144664563 12784083 + 12784063 12784103 41 GCGAGCGTGACACACATGTGGTCAGCTGTTCTGAGGACGGG GCGAGCGTGACACACATGTAGTCAGCTGTTCTGAGGACGGG < 41bp 0.518086129560755 0.73148355503068 NA NA prediction 0.42679485093985 Functional Gain - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12784083 chr19:12784082 synonymous SNV . 0 20 hm7G_associated_SNPs_27388 0 0 1 0 2 WDR83 chr19:12784016 3'AG 12784016 Downstream 67bp 24907 chr19 12784082 12784082 1 + G A rs144664563 12784083 + 12784063 12784103 41 GCGAGCGTGACACACATGTGGTCAGCTGTTCTGAGGACGGG GCGAGCGTGACACACATGTAGTCAGCTGTTCTGAGGACGGG < 41bp 0.518086129560755 0.73148355503068 NA NA prediction 0.42679485093985 Functional Gain - WDR83 ENSG00000123154 CDS Human protein_coding chr19:12784083 chr19:12784082 synonymous SNV . 0 20 hm7G_associated_SNPs_27388 0 0 1 0 2 WDR83 chr19:12784130 5'GT 12784130 Upstream 49bp 24908 chr1 28290030 28290030 1 + G A UCEC 28290031 + 28290011 28290051 41 CGTGCAGGAGCTGCGGCAGGGGCTGCTGGTGTGGCAGCAGG CGTGCAGGAGCTGCGGCAGAGGCTGCTGGTGTGGCAGCAGG < 41bp 0.554172199127747 0.767569038544662 NA NA prediction 0.426793678833829 Functional Gain - XKR8 ENSG00000158156 CDS Human protein_coding chr1:28290031 chr1:28290030 nonsynonymous SNV 0.637 1 20 hm7G_associated_SNPs_27389 0 0 0 0 1 XKR8 chr1:28290008 3'AG 28290008 Downstream 23bp 24909 chr19 36168758 36168758 1 + G T THYM 36168759 + 36168739 36168779 41 CCATCGACAGCTACACGTGGGGTATCTCGTGGTTTGGGTTT CCATCGACAGCTACACGTGTGGTATCTCGTGGTTTGGGTTT < 41bp 0.693601331953067 0.906998112234429 NA NA prediction 0.426793560562724 Functional Gain - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36168759 chr19:36168758 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27390 0 0 0 0 2 UPK1A chr19:36168714 3'AG 36168714 Downstream 45bp 24910 chr19 36168758 36168758 1 + G T THYM 36168759 + 36168739 36168779 41 CCATCGACAGCTACACGTGGGGTATCTCGTGGTTTGGGTTT CCATCGACAGCTACACGTGTGGTATCTCGTGGTTTGGGTTT < 41bp 0.693601331953067 0.906998112234429 NA NA prediction 0.426793560562724 Functional Gain - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36168759 chr19:36168758 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27390 0 0 0 0 2 UPK1A chr19:36168797 5'GT 36168797 Upstream 40bp 24911 chr16 67572447 67572447 1 + G A UCEC 67572448 + 67572428 67572468 41 CTCGGCAGCCACGAGCGGGGGCCCAGGTACGCGGCCGCGCA CTCGGCAGCCACGAGCGGGAGCCCAGGTACGCGGCCGCGCA < 41bp 0.5437101763219 0.757106212035629 NA NA prediction 0.426792071427458 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572448 chr16:67572447 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_27391 0 0 0 0 1 RIPOR1 chr16:67572453 5'GT 67572453 Upstream 7bp 24912 chr7 100084776 100084776 1 + G A SKCM 100084777 + 100084757 100084797 41 ATGGTGGGGCCTGGGTCTGGGGCAGAGACGCCCCCCAGCAA ATGGTGGGGCCTGGGTCTGAGGCAGAGACGCCCCCCAGCAA < 41bp 0.545401400912375 0.758797029583742 NA NA prediction 0.426791257342733 Functional Gain - NYAP1 ENSG00000166924 CDS Human protein_coding chr7:100084777 chr7:100084776 nonsynonymous SNV 0.137 3 20 hm7G_associated_SNPs_27392 0 0 0 0 1 NYAP1 chr7:100084805 5'GT 100084805 Upstream 30bp 24913 chr11 540747 540747 1 + G A SKCM 540748 + 540728 540768 41 CCTCCAGCGTCCGGGTGCGGGAGCTGAGCTGGCAAGGCCTG CCTCCAGCGTCCGGGTGCGAGAGCTGAGCTGGCAAGGCCTG < 41bp 0.520027512777797 0.733422736759927 NA NA prediction 0.426790447964259 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:540748 chr11:540747 synonymous SNV . 0 20 hm7G_associated_SNPs_27393 0 0 1 0 1 LRRC56 chr11:540674 3'AG 540674 Downstream 74bp 24914 chr16 29841984 29841984 1 + G A rs149099434 29841985 + 29841965 29842005 41 CAAAGACCTACATCCGGCAGGACAATGAGAGGTGGGTGTGG CAAAGACCTACATCCGGCAAGACAATGAGAGGTGGGTGTGG < 41bp 0.525353459385321 0.738747650245088 NA NA prediction 0.426788381719534 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29841985 chr16:29841984 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27394 0 0 0 2 1 MVP chr16:29841995 5'GT 29841995 Upstream 12bp 24915 chr9 34972419 34972419 1 + G A SKCM 34972420 + 34972400 34972440 41 CCGTGCAGGGTCTGCACCAGGGTTTTCCATGATGGCTGCCT CCGTGCAGGGTCTGCACCAAGGTTTTCCATGATGGCTGCCT < 41bp 0.483072367363864 0.713392694348418 NA NA prediction 0.426785388696836 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34972420 chr9:34972419 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27395 0 0 0 0 1 PHF24 chr9:34972343 3'AG 34972343 Downstream 77bp 24916 chr16 67685742 67685742 1 + G A HNSC 67685743 + 67685723 67685763 41 CTGCAAGATGCCTTCACTAGGCTCAGGTAGGCTGGATGGGG CTGCAAGATGCCTTCACTAAGCTCAGGTAGGCTGGATGGGG < 41bp 0.531115180253025 0.744502512413038 NA NA prediction 0.426774664320026 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67685743 chr16:67685742 nonsynonymous SNV 0.949 1 20 hm7G_associated_SNPs_27396 0 0 0 0 1 CARMIL2 chr16:67685748 5'GT 67685748 Upstream 7bp 24917 chr7 152513582 152513582 1 + C T READ 152513583 + 152513563 152513603 41 CAGGCAGTGCTGGCCTTGGCGGCATCTTGGACATCTCGACA CAGGCAGTGCTGGCCTTGGTGGCATCTTGGACATCTCGACA < 41bp 0.503859143634837 0.717246220744413 NA NA prediction 0.426774154219153 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152513583 chr7:152513582 nonsynonymous SNV 0.965 2 20 hm7G_associated_SNPs_27397 0 0 0 0 2 ACTR3B chr7:152513566 3'AG 152513566 Downstream 17bp 24918 chr7 152513582 152513582 1 + C T READ 152513583 + 152513563 152513603 41 CAGGCAGTGCTGGCCTTGGCGGCATCTTGGACATCTCGACA CAGGCAGTGCTGGCCTTGGTGGCATCTTGGACATCTCGACA < 41bp 0.503859143634837 0.717246220744413 NA NA prediction 0.426774154219153 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152513583 chr7:152513582 nonsynonymous SNV 0.965 2 20 hm7G_associated_SNPs_27397 0 0 0 0 2 ACTR3B chr7:152513673 5'GT 152513673 Upstream 92bp 24919 chr5 145428732 145428732 1 + G T SARC 145428733 + 145428713 145428753 41 CCTGGGGAAGTGCCAGGACGGCTGGCTCAGGGGCGTCTCCT CCTGGGGAAGTGCCAGGACTGCTGGCTCAGGGGCGTCTCCT < 41bp 0.688678313256099 0.902064000395879 NA NA prediction 0.426771374279561 Functional Gain - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145428733 chr5:145428732 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_27398 0 0 0 0 2 SH3RF2 chr5:145428638 3'AG 145428638 Downstream 95bp 24920 chr5 145428732 145428732 1 + G T SARC 145428733 + 145428713 145428753 41 CCTGGGGAAGTGCCAGGACGGCTGGCTCAGGGGCGTCTCCT CCTGGGGAAGTGCCAGGACTGCTGGCTCAGGGGCGTCTCCT < 41bp 0.688678313256099 0.902064000395879 NA NA prediction 0.426771374279561 Functional Gain - SH3RF2 ENSG00000156463 CDS Human protein_coding chr5:145428733 chr5:145428732 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_27398 0 0 0 0 2 SH3RF2 chr5:145428808 5'GT 145428808 Upstream 77bp 24921 chr22 42206263 42206263 1 + G A OV 42206264 + 42206244 42206284 41 GCTGATGTGCTCCCAGATGGGCCCTTCCCCCAGGACGAGAA GCTGATGTGCTCCCAGATGAGCCCTTCCCCCAGGACGAGAA < 41bp 0.520917138995166 0.734302816890794 NA NA prediction 0.426771355791257 Functional Gain - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42206264 chr22:42206263 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_27399 0 0 1 0 2 CCDC134 chr22:42206211 3'AG 42206211 Downstream 53bp 24922 chr22 42206263 42206263 1 + G A OV 42206264 + 42206244 42206284 41 GCTGATGTGCTCCCAGATGGGCCCTTCCCCCAGGACGAGAA GCTGATGTGCTCCCAGATGAGCCCTTCCCCCAGGACGAGAA < 41bp 0.520917138995166 0.734302816890794 NA NA prediction 0.426771355791257 Functional Gain - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42206264 chr22:42206263 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_27399 0 0 1 0 2 CCDC134 chr22:42206295 5'GT 42206295 Upstream 33bp 24923 chr2 119732105 119732105 1 + G A SKCM 119732106 + 119732086 119732126 41 TTCCCTTCCAGGCCCCTCGGGACCCCAAGGCCCACCGGGAG TTCCCTTCCAGGCCCCTCGAGACCCCAAGGCCCACCGGGAG < 41bp 0.502703063242597 0.716088600302978 NA NA prediction 0.426771074120763 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119732106 chr2:119732105 nonsynonymous SNV 0.352 4 20 hm7G_associated_SNPs_27400 0 0 0 0 2 MARCO chr2:119732097 3'AG 119732097 Downstream 9bp 24924 chr2 119732105 119732105 1 + G A SKCM 119732106 + 119732086 119732126 41 TTCCCTTCCAGGCCCCTCGGGACCCCAAGGCCCACCGGGAG TTCCCTTCCAGGCCCCTCGAGACCCCAAGGCCCACCGGGAG < 41bp 0.502703063242597 0.716088600302978 NA NA prediction 0.426771074120763 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119732106 chr2:119732105 nonsynonymous SNV 0.352 4 20 hm7G_associated_SNPs_27400 0 0 0 0 2 MARCO chr2:119732141 5'GT 119732141 Upstream 37bp 24925 chr1 202273709 202273709 1 + C T PAAD 202273710 + 202273690 202273730 41 CCTGACCCGCGCAGGCATCCGGCTGCTCCCATCGGGGATGT CCTGACCCGCGCAGGCATCTGGCTGCTCCCATCGGGGATGT < 41bp 0.510144866152099 0.723529824547047 NA NA prediction 0.426769916789896 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273710 chr1:202273709 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_27401 0 0 0 0 2 LGR6 chr1:202273687 3'AG 202273687 Downstream 23bp 24926 chr1 202273709 202273709 1 + C T PAAD 202273710 + 202273690 202273730 41 CCTGACCCGCGCAGGCATCCGGCTGCTCCCATCGGGGATGT CCTGACCCGCGCAGGCATCTGGCTGCTCCCATCGGGGATGT < 41bp 0.510144866152099 0.723529824547047 NA NA prediction 0.426769916789896 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202273710 chr1:202273709 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_27401 0 0 0 0 2 LGR6 chr1:202273758 5'GT 202273758 Upstream 50bp 24927 chr1 39988086 39988086 1 + G A STAD 39988087 + 39988067 39988107 41 CCCTGCAGATGACGTCCGCGGCTCCCACGGCCGGCAGGTCT CCCTGCAGATGACGTCCGCAGCTCCCACGGCCGGCAGGTCT < 41bp 0.552147564051784 0.765531583838569 NA NA prediction 0.42676803957357 Functional Gain - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39988087 chr1:39988086 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_27402 0 0 0 0 2 BMP8A chr1:39988075 3'AG 39988075 Downstream 12bp 24928 chr1 39988086 39988086 1 + G A STAD 39988087 + 39988067 39988107 41 CCCTGCAGATGACGTCCGCGGCTCCCACGGCCGGCAGGTCT CCCTGCAGATGACGTCCGCAGCTCCCACGGCCGGCAGGTCT < 41bp 0.552147564051784 0.765531583838569 NA NA prediction 0.42676803957357 Functional Gain - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39988087 chr1:39988086 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_27402 0 0 0 0 2 BMP8A chr1:39988154 5'GT 39988154 Upstream 69bp 24929 chr8 22355572 22355572 1 + G T LUAD 22355573 + 22355553 22355593 41 AAAACATTGTTTCTGCTTCGGGGAAATCATGAATGCAGGCA AAAACATTGTTTCTGCTTCTGGGAAATCATGAATGCAGGCA < 41bp 0.687379337433273 0.900758439539865 NA NA prediction 0.426758204213185 Functional Gain - PPP3CC ENSG00000120910 CDS Human protein_coding chr8:22355573 chr8:22355572 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27403 0 0 0 0 1 PPP3CC chr8:22355625 5'GT 22355625 Upstream 54bp 24930 chr1 158046018 158046018 1 + C T COAD 158046019 + 158045999 158046039 41 TTGTGCAATGGACCAAGGACGGGCTGGCCCTGGGCATGGGC TTGTGCAATGGACCAAGGATGGGCTGGCCCTGGGCATGGGC < 41bp 0.501732587801864 0.715102199051558 NA NA prediction 0.426739222499387 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158046019 chr1:158046018 synonymous SNV . 0 20 hm7G_associated_SNPs_27405 0 0 0 0 1 KIRREL chr1:158046052 5'GT 158046052 Upstream 35bp 24931 chr22 51044096 51044096 1 + G A SKCM 51044097 + 51044077 51044117 41 TGGCTTCAACATGCGCACGGGGGAGCGCGGTGTGTTTCCTG TGGCTTCAACATGCGCACGAGGGAGCGCGGTGTGTTTCCTG < 41bp 0.518073788598082 0.731441096202342 NA NA prediction 0.426734615208521 Functional Gain - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044097 chr22:51044096 nonsynonymous SNV 0.142 0 20 hm7G_associated_SNPs_27406 0 0 1 0 1 MAPK8IP2 chr22:51044162 5'GT 51044162 Upstream 67bp 24932 chr19 35786610 35786610 1 + G A GBM 35786611 + 35786591 35786631 41 CCTGCCGCTTTGACTTCCCGGATGAGCTGCGGCCCGCTGTG CCTGCCGCTTTGACTTCCCAGATGAGCTGCGGCCCGCTGTG < 41bp 0.493029029556182 0.713365763649613 NA NA prediction 0.426731527299226 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35786611 chr19:35786610 synonymous SNV . 0 20 hm7G_associated_SNPs_27407 0 0 0 0 1 MAG chr19:35786516 3'AG 35786516 Downstream 95bp 24933 chr12 112924279 112924279 1 + G T LUAD 112924280 + 112924260 112924300 41 TTTCTTGGCTCTACTCCAGGGGAATACGGAGAGAACGGTCT TTTCTTGGCTCTACTCCAGTGGAATACGGAGAGAACGGTCT < 41bp 0.69112760808522 0.904489980205394 NA NA prediction 0.426724744240348 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112924280 chr12:112924279 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27408 0 0 1 0 1 PTPN11 chr12:112924279 3'AG 112924279 Downstream 1bp 24934 chr12 8197503 8197503 1 + C T CESC 8197504 + 8197484 8197524 41 GGATCTAAGCTGGTCCTTCCGCAACCTCTATAAGTCCATGC GGATCTAAGCTGGTCCTTCTGCAACCTCTATAAGTCCATGC < 41bp 0.511996760701678 0.725359010168835 NA NA prediction 0.426724498934315 Functional Gain - FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8197504 chr12:8197503 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27409 0 0 0 0 1 FOXJ2 chr12:8197554 5'GT 8197554 Upstream 52bp 24935 chr19 50792767 50792767 1 + G T SARC 50792768 + 50792748 50792788 41 GAGCACAGGTGACAGAACTGGAGGATGAGCTGACAGCGGCC GAGCACAGGTGACAGAACTTGAGGATGAGCTGACAGCGGCC < 41bp 0.370279521989859 0.713353118361649 NA NA prediction 0.426706236723298 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50792768 chr19:50792767 synonymous SNV . 0 20 hm7G_associated_SNPs_27411 0 0 0 0 1 MYH14 chr19:50792693 3'AG 50792693 Downstream 75bp 24936 chr16 89702763 89702763 1 + G A CESC 89702764 + 89702744 89702784 41 GTGGTCCACCGCATGTGCCGGATGTACCCGGAGACCTTCCT GTGGTCCACCGCATGTGCCAGATGTACCCGGAGACCTTCCT < 41bp 0.511733444641414 0.725083666282678 NA NA prediction 0.426700443282527 Functional Gain - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89702764 chr16:89702763 nonsynonymous SNV 0.075 0 20 hm7G_associated_SNPs_27412 0 0 1 0 2 DPEP1 chr16:89702672 3'AG 89702672 Downstream 92bp 24937 chr16 89702763 89702763 1 + G A CESC 89702764 + 89702744 89702784 41 GTGGTCCACCGCATGTGCCGGATGTACCCGGAGACCTTCCT GTGGTCCACCGCATGTGCCAGATGTACCCGGAGACCTTCCT < 41bp 0.511733444641414 0.725083666282678 NA NA prediction 0.426700443282527 Functional Gain - DPEP1 ENSG00000015413 CDS Human protein_coding chr16:89702764 chr16:89702763 nonsynonymous SNV 0.075 0 20 hm7G_associated_SNPs_27412 0 0 1 0 2 DPEP1 chr16:89702804 5'GT 89702804 Upstream 42bp 24938 chr15 75310764 75310764 1 + G A SKCM 75310765 + 75310745 75310785 41 GCCTCTTCCTGCAGCGGCTGGATTGCTACCATCTCCTTCTT GCCTCTTCCTGCAGCGGCTAGATTGCTACCATCTCCTTCTT < 41bp 0.497329340122035 0.713347828875931 NA NA prediction 0.426695657751862 Functional Gain - SCAMP5 ENSG00000198794 CDS Human protein_coding chr15:75310765 chr15:75310764 stopgain 0.998 1 20 hm7G_associated_SNPs_27414 0 0 0 0 2 SCAMP5 chr15:75310735 3'AG 75310735 Downstream 30bp 24939 chr15 75310764 75310764 1 + G A SKCM 75310765 + 75310745 75310785 41 GCCTCTTCCTGCAGCGGCTGGATTGCTACCATCTCCTTCTT GCCTCTTCCTGCAGCGGCTAGATTGCTACCATCTCCTTCTT < 41bp 0.497329340122035 0.713347828875931 NA NA prediction 0.426695657751862 Functional Gain - SCAMP5 ENSG00000198794 CDS Human protein_coding chr15:75310765 chr15:75310764 stopgain 0.998 1 20 hm7G_associated_SNPs_27414 0 0 0 0 2 SCAMP5 chr15:75310759 3'AG 75310759 Downstream 6bp 24940 chr1 12091837 12091837 1 + G A COAD 12091838 + 12091818 12091858 41 TCAGTGCCCCAGGTCCCTCGGCCCCACGTCCCACGGCAGAA TCAGTGCCCCAGGTCCCTCAGCCCCACGTCCCACGGCAGAA < 41bp 0.488144183809699 0.713345661868626 NA NA prediction 0.426691323737253 Functional Gain - MIIP ENSG00000116691 CDS Human protein_coding chr1:12091838 chr1:12091837 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_27416 0 0 1 0 1 MIIP chr1:12091779 3'AG 12091779 Downstream 59bp 24941 chr2 231865218 231865218 1 + G T UCEC 231865219 + 231865199 231865239 41 GGACTGGCAGATGGCGCCAGGGAGAGGACTCCCCAACCTGC GGACTGGCAGATGGCGCCATGGAGAGGACTCCCCAACCTGC < 41bp 0.69098281102468 0.904328280509744 NA NA prediction 0.426690938970129 Functional Gain - SPATA3 ENSG00000173699 CDS Human protein_coding chr2:231865219 chr2:231865218 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_27417 0 0 0 0 1 SPATA3 chr2:231865252 5'GT 231865252 Upstream 35bp 24942 chr19 36220070 36220070 1 + G A COAD 36220071 + 36220051 36220091 41 CTGCCCCAGGAGGCGGGGCGGCTCTTGTACATCGGGCAGAA CTGCCCCAGGAGGCGGGGCAGCTCTTGTACATCGGGCAGAA < 41bp 0.496120651778432 0.713343996721296 NA NA prediction 0.426687993442592 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36220071 chr19:36220070 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27418 0 0 1 0 1 KMT2B chr19:36220060 3'AG 36220060 Downstream 11bp 24943 chr15 40558610 40558610 1 + C T PRAD 40558611 + 40558591 40558631 41 CCGGGAGAGCAGCCTGAAGCGCAGGCTATTCCGAAGCATGT CCGGGAGAGCAGCCTGAAGTGCAGGCTATTCCGAAGCATGT < 41bp 0.500629634182099 0.713971038179245 NA NA prediction 0.426682807994292 Functional Gain - BUB1B-PAK6;PAK6 ENSG00000137843 CDS Human protein_coding chr15:40558611 chr15:40558610 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_27420 0 0 0 0 1 BUB1B-PAK6;PAK6 chr15:40558696 5'GT 40558696 Upstream 87bp 24944 chr16 83994336 83994336 1 + G T LUAD 83994337 + 83994317 83994357 41 CATCCCCCACGTGGTTCTGGGCCGGAACCTCCCCGGGGGAG CATCCCCCACGTGGTTCTGTGCCGGAACCTCCCCGGGGGAG < 41bp 0.362902231253084 0.713341277167939 NA NA prediction 0.426682554335878 Functional Gain - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83994337 chr16:83994336 nonsynonymous SNV 0.852 4 20 hm7G_associated_SNPs_27421 0 0 0 0 1 OSGIN1 chr16:83994365 5'GT 83994365 Upstream 30bp 24945 chr6 2770510 2770510 1 + C T STAD 2770511 + 2770491 2770531 41 AATGGTGACTATTTTAATGCGAGCGATCAACTCCCTGGGAA AATGGTGACTATTTTAATGTGAGCGATCAACTCCCTGGGAA < 41bp 0.508675410407062 0.722014258493251 NA NA prediction 0.426677696172379 Functional Gain - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2770511 chr6:2770510 stopgain 0.999 1 20 hm7G_associated_SNPs_27422 0 0 1 0 1 WRNIP1 chr6:2770429 3'AG 2770429 Downstream 82bp 24946 chr15 58834807 58834807 1 + C T COAD 58834808 + 58834788 58834828 41 CACACGTGTCAGGATTTGCCGGCAGTTCCATCGGTGGAACG CACACGTGTCAGGATTTGCTGGCAGTTCCATCGGTGGAACG < 41bp 0.521693666289087 0.735029539879914 NA NA prediction 0.426671747181655 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834808 chr15:58834807 synonymous SNV . 0 20 hm7G_associated_SNPs_27423 0 0 1 0 2 LIPC chr15:58834733 3'AG 58834733 Downstream 75bp 24947 chr15 58834807 58834807 1 + C T COAD 58834808 + 58834788 58834828 41 CACACGTGTCAGGATTTGCCGGCAGTTCCATCGGTGGAACG CACACGTGTCAGGATTTGCTGGCAGTTCCATCGGTGGAACG < 41bp 0.521693666289087 0.735029539879914 NA NA prediction 0.426671747181655 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834808 chr15:58834807 synonymous SNV . 0 20 hm7G_associated_SNPs_27423 0 0 1 0 2 LIPC chr15:58834850 5'GT 58834850 Upstream 44bp 24948 chr2 114737640 114737640 1 + G A rs544644768 114737641 + 114737621 114737661 41 ACGTGGGGCGGGGACACACGGCGATAAAGAGCCAGGCCCTC ACGTGGGGCGGGGACACACAGCGATAAAGAGCCAGGCCCTC < 41bp 0.542186401394499 0.755517219372445 NA NA prediction 0.426661635955892 Functional Gain - LINC01191 ENSG00000234199;ENSG00000243179 ncRNA_exonic Human other chr2:114737641 chr2:114737640 . . 0 20 hm7G_associated_SNPs_27425 0 0 0 1 1 LINC01191 chr2:114737705 5'GT 114737705 Upstream 66bp 24949 chr9 75355081 75355081 1 + G T LGG 75355082 + 75355062 75355102 41 TGAAGGGGCTCTTGGGAAAGGAAAAGGAAAACGGTGGTTTG TGAAGGGGCTCTTGGGAAATGAAAAGGAAAACGGTGGTTTG < 41bp 0.679490355220748 0.892814228404865 NA NA prediction 0.426647746368233 Functional Gain - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75355082 chr9:75355081 stopgain 1.000 1 20 hm7G_associated_SNPs_27426 0 0 0 0 2 TMC1 chr9:75355035 3'AG 75355035 Downstream 47bp 24950 chr9 75355081 75355081 1 + G T LGG 75355082 + 75355062 75355102 41 TGAAGGGGCTCTTGGGAAAGGAAAAGGAAAACGGTGGTTTG TGAAGGGGCTCTTGGGAAATGAAAAGGAAAACGGTGGTTTG < 41bp 0.679490355220748 0.892814228404865 NA NA prediction 0.426647746368233 Functional Gain - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75355082 chr9:75355081 stopgain 1.000 1 20 hm7G_associated_SNPs_27426 0 0 0 0 2 TMC1 chr9:75355125 5'GT 75355125 Upstream 45bp 24951 chr6 33372694 33372694 1 + G T UCEC 33372695 + 33372675 33372715 41 AGGTGGCATCTCTGCGGCAGGAGACTGTGGCCCAGGCAGCC AGGTGGCATCTCTGCGGCATGAGACTGTGGCCCAGGCAGCC < 41bp 0.360534745909496 0.713319439711146 NA NA prediction 0.426638879422292 Functional Gain - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33372695 chr6:33372694 nonsynonymous SNV 0.045 3 20 hm7G_associated_SNPs_27428 0 0 1 0 1 KIFC1 chr6:33372629 3'AG 33372629 Downstream 66bp 24952 chr10 70723203 70723203 1 + G T UCEC 70723204 + 70723184 70723224 41 CATGGGGAACTGCAAGACAGGAAGAGAGGCCGTGCCCCTCA CATGGGGAACTGCAAGACATGAAGAGAGGCCGTGCCCCTCA < 41bp 0.676241780313186 0.889555328057398 NA NA prediction 0.426627095488424 Functional Gain - DDX21 ENSG00000165732 CDS Human protein_coding chr10:70723204 chr10:70723203 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_27429 0 0 1 0 1 DDX21 chr10:70723225 5'GT 70723225 Upstream 23bp 24953 chr14 76088484 76088484 1 + C T UCEC 76088485 + 76088465 76088505 41 CCAACATTGAAGACCGGGACGAGCTTGCCTACCACATCAGC CCAACATTGAAGACCGGGATGAGCTTGCCTACCACATCAGC < 41bp 0.502875632990179 0.716178878960813 NA NA prediction 0.426606491941269 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76088485 chr14:76088484 synonymous SNV . 0 20 hm7G_associated_SNPs_27431 0 0 0 0 2 FLVCR2 chr14:76088422 3'AG 76088422 Downstream 63bp 24954 chr14 76088484 76088484 1 + C T UCEC 76088485 + 76088465 76088505 41 CCAACATTGAAGACCGGGACGAGCTTGCCTACCACATCAGC CCAACATTGAAGACCGGGATGAGCTTGCCTACCACATCAGC < 41bp 0.502875632990179 0.716178878960813 NA NA prediction 0.426606491941269 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76088485 chr14:76088484 synonymous SNV . 0 20 hm7G_associated_SNPs_27431 0 0 0 0 2 FLVCR2 chr14:76088563 5'GT 76088563 Upstream 80bp 24955 chrX 108780238 108780238 1 + G A SKCM 108780239 + 108780219 108780259 41 CTGCTACAAGGTCCCAGATGGCCACGTCTCTGGTGAGTGCC CTGCTACAAGGTCCCAGATAGCCACGTCTCTGGTGAGTGCC < 41bp 0.505036819201697 0.718338062111837 NA NA prediction 0.426602485820281 Functional Gain - NXT2 ENSG00000101888 CDS Human protein_coding chrX:108780239 chrX:108780238 nonsynonymous SNV 0.120 1 20 hm7G_associated_SNPs_27432 0 0 0 0 2 NXT2 chrX:108780166 3'AG 108780166 Downstream 73bp 24956 chrX 108780238 108780238 1 + G A SKCM 108780239 + 108780219 108780259 41 CTGCTACAAGGTCCCAGATGGCCACGTCTCTGGTGAGTGCC CTGCTACAAGGTCCCAGATAGCCACGTCTCTGGTGAGTGCC < 41bp 0.505036819201697 0.718338062111837 NA NA prediction 0.426602485820281 Functional Gain - NXT2 ENSG00000101888 CDS Human protein_coding chrX:108780239 chrX:108780238 nonsynonymous SNV 0.120 1 20 hm7G_associated_SNPs_27432 0 0 0 0 2 NXT2 chrX:108780250 5'GT 108780250 Upstream 13bp 24957 chr14 105836215 105836215 1 + G T THCA 105836216 + 105836196 105836236 41 AAAGTGGTAGCGCTGCTGCGGAGGTTCAAAGTGTCCGACGA AAAGTGGTAGCGCTGCTGCTGAGGTTCAAAGTGTCCGACGA < 41bp 0.359735736625828 0.713297772658339 NA NA prediction 0.426595545316678 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105836216 chr14:105836215 nonsynonymous SNV 0.980 2 20 hm7G_associated_SNPs_27434 0 0 1 0 2 PACS2 chr14:105836178 3'AG 105836178 Downstream 38bp 24958 chr14 105836215 105836215 1 + G T THCA 105836216 + 105836196 105836236 41 AAAGTGGTAGCGCTGCTGCGGAGGTTCAAAGTGTCCGACGA AAAGTGGTAGCGCTGCTGCTGAGGTTCAAAGTGTCCGACGA < 41bp 0.359735736625828 0.713297772658339 NA NA prediction 0.426595545316678 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105836216 chr14:105836215 nonsynonymous SNV 0.980 2 20 hm7G_associated_SNPs_27434 0 0 1 0 2 PACS2 chr14:105836237 5'GT 105836237 Upstream 23bp 24959 chr12 9161608 9161608 1 + G T OV 9161609 + 9161589 9161629 41 CTCAGTGAGGCCTTTTGCTGGATTGGTCTGAGGAACAATTC CTCAGTGAGGCCTTTTGCTTGATTGGTCTGAGGAACAATTC < 41bp 0.688615512414447 0.901913035154122 NA NA prediction 0.426595045479351 Functional Gain - KLRG1 ENSG00000139187 CDS Human protein_coding chr12:9161609 chr12:9161608 nonsynonymous SNV 0.044 4 20 hm7G_associated_SNPs_27436 0 0 0 0 2 KLRG1 chr12:9161571 3'AG 9161571 Downstream 38bp 24960 chr12 9161608 9161608 1 + G T OV 9161609 + 9161589 9161629 41 CTCAGTGAGGCCTTTTGCTGGATTGGTCTGAGGAACAATTC CTCAGTGAGGCCTTTTGCTTGATTGGTCTGAGGAACAATTC < 41bp 0.688615512414447 0.901913035154122 NA NA prediction 0.426595045479351 Functional Gain - KLRG1 ENSG00000139187 CDS Human protein_coding chr12:9161609 chr12:9161608 nonsynonymous SNV 0.044 4 20 hm7G_associated_SNPs_27436 0 0 0 0 2 KLRG1 chr12:9161671 5'GT 9161671 Upstream 64bp 24961 chr3 1415693 1415693 1 + C T SARC 1415694 + 1415674 1415714 41 ATGAATTTCGTGTTGTTGCCGGCAACAGCATTGGGATTGGA ATGAATTTCGTGTTGTTGCTGGCAACAGCATTGGGATTGGA < 41bp 0.510783411569016 0.72408044322691 NA NA prediction 0.426594063315787 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1415694 chr3:1415693 synonymous SNV . 0 20 hm7G_associated_SNPs_27437 0 0 0 0 2 CNTN6 chr3:1415608 3'AG 1415608 Downstream 86bp 24962 chr3 1415693 1415693 1 + C T SARC 1415694 + 1415674 1415714 41 ATGAATTTCGTGTTGTTGCCGGCAACAGCATTGGGATTGGA ATGAATTTCGTGTTGTTGCTGGCAACAGCATTGGGATTGGA < 41bp 0.510783411569016 0.72408044322691 NA NA prediction 0.426594063315787 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1415694 chr3:1415693 synonymous SNV . 0 20 hm7G_associated_SNPs_27437 0 0 0 0 2 CNTN6 chr3:1415757 5'GT 1415757 Upstream 65bp 24963 chr1 160104377 160104377 1 + G A UCEC 160104378 + 160104358 160104398 41 GTGGAGGACATTGCAGCCCGGCTCAACATTCCCATGAGTCA GTGGAGGACATTGCAGCCCAGCTCAACATTCCCATGAGTCA < 41bp 0.501678740052688 0.714975314377663 NA NA prediction 0.42659314864995 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160104378 chr1:160104377 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_27438 0 0 0 0 1 ATP1A2 chr1:160104410 5'GT 160104410 Upstream 34bp 24964 chr19 45971941 45971941 1 + G A rs28381241 45971942 + 45971922 45971962 41 GTCTTCGGTGGACTCCTTCGGCAGTCCACCCACCGCCGCCG GTCTTCGGTGGACTCCTTCAGCAGTCCACCCACCGCCGCCG < 41bp 0.5099286509766 0.723216216997572 NA NA prediction 0.426575132041944 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45971942 chr19:45971941 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27439 0 0 0 0 1 FOSB chr19:45971970 5'GT 45971970 Upstream 30bp 24965 chr16 27732945 27732945 1 + C T COAD 27732946 + 27732926 27732966 41 CCAGCTGTTTTTTGTTATTCGAAACACAAGACAGCTGGGGG CCAGCTGTTTTTTGTTATTTGAAACACAAGACAGCTGGGGG < 41bp 0.502512603280602 0.71579976185115 NA NA prediction 0.426574317141096 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27732946 chr16:27732945 stopgain 0.052 1 20 hm7G_associated_SNPs_27440 0 0 1 0 2 KIAA0556 chr16:27732879 3'AG 27732879 Downstream 67bp 24966 chr16 27732945 27732945 1 + C T COAD 27732946 + 27732926 27732966 41 CCAGCTGTTTTTTGTTATTCGAAACACAAGACAGCTGGGGG CCAGCTGTTTTTTGTTATTTGAAACACAAGACAGCTGGGGG < 41bp 0.502512603280602 0.71579976185115 NA NA prediction 0.426574317141096 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27732946 chr16:27732945 stopgain 0.052 1 20 hm7G_associated_SNPs_27440 0 0 1 0 2 KIAA0556 chr16:27733016 5'GT 27733016 Upstream 72bp 24967 chr22 20079413 20079413 1 + G T LUAD 20079414 + 20079394 20079434 41 TTTGTTATTAACCCCAACGGGAAATCCGAGGTCTGCATCCT TTTGTTATTAACCCCAACGTGAAATCCGAGGTCTGCATCCT < 41bp 0.695965863763307 0.909244123433687 NA NA prediction 0.426556519340759 Functional Gain - DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079414 chr22:20079413 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_27441 0 0 1 0 1 DGCR8 chr22:20079493 5'GT 20079493 Upstream 81bp 24968 chr15 42702133 42702133 1 + G T UCEC 42702134 + 42702114 42702154 41 TCTCCATCCCCCCAGACAAGGACCTGAAGACACACGGGTTC TCTCCATCCCCCCAGACAATGACCTGAAGACACACGGGTTC < 41bp 0.379689085108994 0.713277053708241 NA NA prediction 0.426554107416483 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42702134 chr15:42702133 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_27442 0 0 0 0 2 CAPN3 chr15:42702129 3'AG 42702129 Downstream 5bp 24969 chr15 42702133 42702133 1 + G T UCEC 42702134 + 42702114 42702154 41 TCTCCATCCCCCCAGACAAGGACCTGAAGACACACGGGTTC TCTCCATCCCCCCAGACAATGACCTGAAGACACACGGGTTC < 41bp 0.379689085108994 0.713277053708241 NA NA prediction 0.426554107416483 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42702134 chr15:42702133 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_27442 0 0 0 0 2 CAPN3 chr15:42702193 5'GT 42702193 Upstream 61bp 24970 chr15 20496616 20496616 1 + G T CESC 20496617 + 20496597 20496637 41 CCTTCTACTAGTCGAAAGTGGCCTCATGAAGGGGAAGCCGA CCTTCTACTAGTCGAAAGTTGCCTCATGAAGGGGAAGCCGA < 41bp 0.664277823018708 0.877545124153977 NA NA prediction 0.426534602270538 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20496617 chr15:20496616 . . 0 20 hm7G_associated_SNPs_27443 0 0 0 0 1 CHEK2P2 chr15:20496597 3'AG 20496597 Downstream 20bp 24971 chr13 113510249 113510249 1 + C T STAD 113510250 + 113510230 113510270 41 CAGCAGATATGCAGGACTACGGTTTAATTATCGACGGAGCT CAGCAGATATGCAGGACTATGGTTTAATTATCGACGGAGCT < 41bp 0.522897492178664 0.736164315466861 NA NA prediction 0.426533646576394 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113510250 chr13:113510249 synonymous SNV . 0 20 hm7G_associated_SNPs_27444 0 0 1 0 1 ATP11A chr13:113510225 3'AG 113510225 Downstream 25bp 24972 chr11 66366963 66366963 1 + G A rs185900251 66366964 + 66366944 66366984 41 GCAGTGGCCATCCTGGGGGGGCCTGGCACCGTGCAGGGGGT GCAGTGGCCATCCTGGGGGAGCCTGGCACCGTGCAGGGGGT < 41bp 0.556806236869911 0.770071369456773 NA NA prediction 0.426530265173725 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66366964 chr11:66366963 nonsynonymous SNV 0.101 2 20 hm7G_associated_SNPs_27445 0 0 1 0 1 CCS chr11:66366930 3'AG 66366930 Downstream 34bp 24973 chr20 33570341 33570341 1 + G A LUSC 33570342 + 33570322 33570362 41 CGTCGCTGCCCTGGGAGACGGGCCGGGCAAGAAGGCCGTAA CGTCGCTGCCCTGGGAGACAGGCCGGGCAAGAAGGCCGTAA < 41bp 0.530015339993415 0.743276836280521 NA NA prediction 0.426522992574212 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33570342 chr20:33570341 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_27446 0 0 0 0 2 MYH7B chr20:33570262 3'AG 33570262 Downstream 80bp 24974 chr20 33570341 33570341 1 + G A LUSC 33570342 + 33570322 33570362 41 CGTCGCTGCCCTGGGAGACGGGCCGGGCAAGAAGGCCGTAA CGTCGCTGCCCTGGGAGACAGGCCGGGCAAGAAGGCCGTAA < 41bp 0.530015339993415 0.743276836280521 NA NA prediction 0.426522992574212 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33570342 chr20:33570341 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_27446 0 0 0 0 2 MYH7B chr20:33570358 5'GT 33570358 Upstream 18bp 24975 chr15 85664054 85664054 1 + C T UCEC 85664055 + 85664035 85664075 41 TAGATCCAATTGATGAGGTCGCTGCACTCATCGCAGCCACC TAGATCCAATTGATGAGGTTGCTGCACTCATCGCAGCCACC < 41bp 0.523461556667118 0.736719128232278 NA NA prediction 0.42651514313032 Functional Gain - PDE8A ENSG00000073417 CDS Human protein_coding chr15:85664055 chr15:85664054 synonymous SNV . 0 20 hm7G_associated_SNPs_27447 0 0 1 0 1 PDE8A chr15:85664028 3'AG 85664028 Downstream 27bp 24976 chr12 58009786 58009786 1 + G A UCEC 58009787 + 58009767 58009807 41 CAGATCTTGGAGAGCCAACGGGACTTCCTCAACGGTGAAGC CAGATCTTGGAGAGCCAACAGGACTTCCTCAACGGTGAAGC < 41bp 0.504398060539091 0.717654973644165 NA NA prediction 0.426513826210147 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58009787 chr12:58009786 nonsynonymous SNV 0.950 0 20 hm7G_associated_SNPs_27448 0 0 1 0 1 ARHGEF25 chr12:58009800 5'GT 58009800 Upstream 15bp 24977 chr1 156811947 156811947 1 + G T LUAD 156811948 + 156811928 156811968 41 GGGACACCATGCAGTTGCGGGCTGCTAGATCTCGGTGCACA GGGACACCATGCAGTTGCGTGCTGCTAGATCTCGGTGCACA < 41bp 0.386579912950796 0.713242935552009 NA NA prediction 0.426485871104019 Functional Gain - INSRR;NTRK1 ENSG00000027644;ENSG00000198400 CDS Human protein_coding chr1:156811948 chr1:156811947 synonymous SNV . 0 20 hm7G_associated_SNPs_27450 0 0 0 0 2 NTRK1 chr1:156811873 3'AG 156811873 Downstream 75bp 24978 chr1 156811947 156811947 1 + G T LUAD 156811948 + 156811928 156811968 41 GGGACACCATGCAGTTGCGGGCTGCTAGATCTCGGTGCACA GGGACACCATGCAGTTGCGTGCTGCTAGATCTCGGTGCACA < 41bp 0.386579912950796 0.713242935552009 NA NA prediction 0.426485871104019 Functional Gain - INSRR;NTRK1 ENSG00000027644;ENSG00000198400 CDS Human other chr1:156811948 chr1:156811947 synonymous SNV . 0 20 hm7G_associated_SNPs_27450 0 0 0 0 2 INSRR;NTRK1 chr1:156811985 5'GT 156811985 Upstream 39bp 24979 chr3 10219631 10219631 1 + G A UCEC 10219632 + 10219612 10219652 41 GGTGGTGGGGCATGCGGCAGGCCACCGTCCAGCAACTTGTG GGTGGTGGGGCATGCGGCAAGCCACCGTCCAGCAACTTGTG < 41bp 0.542902437735485 0.756142475164654 NA NA prediction 0.426480074858339 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10219632 chr3:10219631 synonymous SNV . 0 20 hm7G_associated_SNPs_27452 0 0 1 0 1 IRAK2 chr3:10219704 5'GT 10219704 Upstream 74bp 24980 chrX 152770230 152770230 1 + G A rs4833 152770231 + 152770211 152770251 41 CTTCGGGCGCTGACACCTCGGGCGTCCTGGACCCGGACTCT CTTCGGGCGCTGACACCTCAGGCGTCCTGGACCCGGACTCT < 41bp 0.480559845040287 0.71323875858594 NA NA prediction 0.42647751717188 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152770231 chrX:152770230 synonymous SNV . 0 20 hm7G_associated_SNPs_27453 0 0 1 0 1 BGN chrX:152770327 5'GT 152770327 Upstream 98bp 24981 chr17 8159182 8159182 1 + C T rs371493454 8159183 + 8159163 8159203 41 GCGCTTCCAGGAGCTACAGCGGAACCCGAGCACTGTGGAGG GCGCTTCCAGGAGCTACAGTGGAACCCGAGCACTGTGGAGG < 41bp 0.506673502381785 0.71991188781208 NA NA prediction 0.426476770860589 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159183 chr17:8159182 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_27454 0 0 1 0 2 PFAS chr17:8159123 3'AG 8159123 Downstream 60bp 24982 chr17 8159182 8159182 1 + C T rs371493454 8159183 + 8159163 8159203 41 GCGCTTCCAGGAGCTACAGCGGAACCCGAGCACTGTGGAGG GCGCTTCCAGGAGCTACAGTGGAACCCGAGCACTGTGGAGG < 41bp 0.506673502381785 0.71991188781208 NA NA prediction 0.426476770860589 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159183 chr17:8159182 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_27454 0 0 1 0 2 PFAS chr17:8159228 5'GT 8159228 Upstream 47bp 24983 chr3 39166591 39166591 1 + G T GBM 39166592 + 39166572 39166612 41 TCTTAGAAGGCCACCTGGAGGAAGCTGAGTACCGGCTGGAA TCTTAGAAGGCCACCTGGATGAAGCTGAGTACCGGCTGGAA < 41bp 0.68800821683341 0.901244164410703 NA NA prediction 0.426471895154586 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39166592 chr3:39166591 nonsynonymous SNV 0.943 1 20 hm7G_associated_SNPs_27455 0 0 0 0 2 TTC21A chr3:39166554 3'AG 39166554 Downstream 38bp 24984 chr3 39166591 39166591 1 + G T GBM 39166592 + 39166572 39166612 41 TCTTAGAAGGCCACCTGGAGGAAGCTGAGTACCGGCTGGAA TCTTAGAAGGCCACCTGGATGAAGCTGAGTACCGGCTGGAA < 41bp 0.68800821683341 0.901244164410703 NA NA prediction 0.426471895154586 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39166592 chr3:39166591 nonsynonymous SNV 0.943 1 20 hm7G_associated_SNPs_27455 0 0 0 0 2 TTC21A chr3:39166651 5'GT 39166651 Upstream 61bp 24985 chr2 228113210 228113210 1 + G A BLCA 228113211 + 228113191 228113231 41 TGATGCAAAAGGCGACCCCGGGTTGCCAGGGGCTCCAGGAC TGATGCAAAAGGCGACCCCAGGTTGCCAGGGGCTCCAGGAC < 41bp 0.50034650423742 0.713581403211205 NA NA prediction 0.42646979794757 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228113211 chr2:228113210 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_27456 0 0 0 0 1 COL4A3 chr2:228113236 5'GT 228113236 Upstream 27bp 24986 chr17 2268242 2268242 1 + C T LGG 2268243 + 2268223 2268263 41 GATGGCATCCAGAGGCCGCCGCTGCATTTCCCACAGGGAGG GATGGCATCCAGAGGCCGCTGCTGCATTTCCCACAGGGAGG < 41bp 0.510021389251505 0.723254431906019 NA NA prediction 0.426466085309028 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2268243 chr17:2268242 nonsynonymous SNV 0.580 4 20 hm7G_associated_SNPs_27457 0 0 1 0 1 SGSM2 chr17:2268191 3'AG 2268191 Downstream 52bp 24987 chr8 27394337 27394337 1 + C T COAD 27394338 + 27394318 27394358 41 ACTGGAACAGAACCTGAGTCGGACTTTCAAAAGCCTCTTCA ACTGGAACAGAACCTGAGTTGGACTTTCAAAAGCCTCTTCA < 41bp 0.522756270477641 0.735985039366016 NA NA prediction 0.42645753777675 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27394338 chr8:27394337 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_27460 0 0 1 0 2 EPHX2 chr8:27394301 3'AG 27394301 Downstream 37bp 24988 chr8 27394337 27394337 1 + C T COAD 27394338 + 27394318 27394358 41 ACTGGAACAGAACCTGAGTCGGACTTTCAAAAGCCTCTTCA ACTGGAACAGAACCTGAGTTGGACTTTCAAAAGCCTCTTCA < 41bp 0.522756270477641 0.735985039366016 NA NA prediction 0.42645753777675 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27394338 chr8:27394337 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_27460 0 0 1 0 2 EPHX2 chr8:27394372 5'GT 27394372 Upstream 36bp 24989 chr19 51827008 51827008 1 + G A UCEC 51827009 + 51826989 51827029 41 CGCTGGACCAGCGACCCGCGGGTGCGGCTGCTCATCAACAC CGCTGGACCAGCGACCCGCAGGTGCGGCTGCTCATCAACAC < 41bp 0.557662910880034 0.770891480673092 NA NA prediction 0.426457139586115 Functional Gain - IGLON5 ENSG00000142549 CDS Human protein_coding chr19:51827009 chr19:51827008 nonsynonymous SNV 0.953 4 20 hm7G_associated_SNPs_27461 0 0 0 0 1 IGLON5 chr19:51826916 3'AG 51826916 Downstream 93bp 24990 chr19 4159682 4159682 1 + G A SKCM 4159683 + 4159663 4159703 41 ATGTGGAGCCCAGGAGGAAGGATCTGTGCTGAGAAGCCGGC ATGTGGAGCCCAGGAGGAAAGATCTGTGCTGAGAAGCCGGC < 41bp 0.531311192310484 0.744538627418491 NA NA prediction 0.426454870216013 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4159683 chr19:4159682 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_27463 0 0 0 0 2 CREB3L3 chr19:4159661 3'AG 4159661 Downstream 22bp 24991 chr19 4159682 4159682 1 + G A SKCM 4159683 + 4159663 4159703 41 ATGTGGAGCCCAGGAGGAAGGATCTGTGCTGAGAAGCCGGC ATGTGGAGCCCAGGAGGAAAGATCTGTGCTGAGAAGCCGGC < 41bp 0.531311192310484 0.744538627418491 NA NA prediction 0.426454870216013 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4159683 chr19:4159682 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_27463 0 0 0 0 2 CREB3L3 chr19:4159779 5'GT 4159779 Upstream 98bp 24992 chr2 220396815 220396815 1 + G T UCEC 220396816 + 220396796 220396836 41 GGGGTTCGGGGTGTCCCCAGGCTTCCAGACCTTTGTGTCCT GGGGTTCGGGGTGTCCCCATGCTTCCAGACCTTTGTGTCCT < 41bp 0.682359266262736 0.89558318761301 NA NA prediction 0.426447842700549 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396816 chr2:220396815 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27464 0 0 1 0 2 ASIC4 chr2:220396723 3'AG 220396723 Downstream 93bp 24993 chr2 220396815 220396815 1 + G T UCEC 220396816 + 220396796 220396836 41 GGGGTTCGGGGTGTCCCCAGGCTTCCAGACCTTTGTGTCCT GGGGTTCGGGGTGTCCCCATGCTTCCAGACCTTTGTGTCCT < 41bp 0.682359266262736 0.89558318761301 NA NA prediction 0.426447842700549 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396816 chr2:220396815 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27464 0 0 1 0 2 ASIC4 chr2:220396850 5'GT 220396850 Upstream 36bp 24994 chr17 40933316 40933316 1 + G A GBM 40933317 + 40933297 40933337 41 CCGACACCACAGTGGAGGTGGCCTGGTGTGAGCTGCAGGTG CCGACACCACAGTGGAGGTAGCCTGGTGTGAGCTGCAGGTG < 41bp 0.49136251878089 0.713218177293691 NA NA prediction 0.426436354587381 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40933317 chr17:40933316 synonymous SNV . 0 20 hm7G_associated_SNPs_27465 0 0 1 0 1 WNK4 chr17:40933334 5'GT 40933334 Upstream 19bp 24995 chr17 80377727 80377727 1 + G T UCEC 80377728 + 80377708 80377748 41 AGTTCATTTAGACCTTAAAGGAGCTCCACCAAAGGTCTCGT AGTTCATTTAGACCTTAAATGAGCTCCACCAAAGGTCTCGT < 41bp 0.366716656996551 0.713217342944987 NA NA prediction 0.426434685889975 Functional Gain - HEXDC ENSG00000169660 CDS Human protein_coding chr17:80377728 chr17:80377727 stopgain 0.999 1 20 hm7G_associated_SNPs_27467 0 0 1 0 1 HEXDC chr17:80377759 5'GT 80377759 Upstream 33bp 24996 chr11 77916981 77916981 1 + C T HNSC 77916982 + 77916962 77917002 41 GCTGGCGGGTTTCTATCCCCGGCTCATGGCCAAGTCAGACA GCTGGCGGGTTTCTATCCCTGGCTCATGGCCAAGTCAGACA < 41bp 0.504221832120807 0.717437071244525 NA NA prediction 0.426430478247434 Functional Gain - USP35 ENSG00000118369 CDS Human protein_coding chr11:77916982 chr11:77916981 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_27468 0 0 0 0 1 USP35 chr11:77916888 3'AG 77916888 Downstream 94bp 24997 chr8 124089435 124089435 1 + C T ESCA 124089436 + 124089416 124089456 41 TGGCTTTTGATGGCACAGGCGACTGCTTAATTGCTGGGGAC TGGCTTTTGATGGCACAGGTGACTGCTTAATTGCTGGGGAC < 41bp 0.500748140289868 0.713962585245135 NA NA prediction 0.426428889910533 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124089436 chr8:124089435 synonymous SNV . 0 20 hm7G_associated_SNPs_27469 0 0 1 0 2 TBC1D31 chr8:124089351 3'AG 124089351 Downstream 85bp 24998 chr8 124089435 124089435 1 + C T ESCA 124089436 + 124089416 124089456 41 TGGCTTTTGATGGCACAGGCGACTGCTTAATTGCTGGGGAC TGGCTTTTGATGGCACAGGTGACTGCTTAATTGCTGGGGAC < 41bp 0.500748140289868 0.713962585245135 NA NA prediction 0.426428889910533 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124089436 chr8:124089435 synonymous SNV . 0 20 hm7G_associated_SNPs_27469 0 0 1 0 2 TBC1D31 chr8:124089497 5'GT 124089497 Upstream 63bp 24999 chr5 149589043 149589043 1 + G T LUAD 149589044 + 149589024 149589064 41 ACCGGACGGGCATGTATGTGGCCACGCTGGCTGGGAGCCAG ACCGGACGGGCATGTATGTTGCCACGCTGGCTGGGAGCCAG < 41bp 0.68826611866899 0.901476779703791 NA NA prediction 0.426421322069601 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149589044 chr5:149589043 synonymous SNV . 0 20 hm7G_associated_SNPs_27470 0 0 0 0 1 SLC6A7 chr5:149588969 3'AG 149588969 Downstream 75bp 25000 chr20 33114078 33114078 1 + G T LUAD 33114079 + 33114059 33114099 41 TTGTTTTCTGGCAGGCAGAGGTGGAGGAGACACTGAAGCGA TTGTTTTCTGGCAGGCAGATGTGGAGGAGACACTGAAGCGA < 41bp 0.67686190263744 0.890072163525206 NA NA prediction 0.426420521775533 Functional Gain - DYNLRB1 ENSG00000125971 CDS Human protein_coding chr20:33114079 chr20:33114078 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_27471 0 0 1 0 1 DYNLRB1 chr20:33114148 5'GT 33114148 Upstream 71bp 25001 chr1 171227266 171227266 1 + G A rs201227313 171227267 + 171227247 171227287 41 TGTGGGAGCTGGGGTCAGCGGCCTGGCCTCCATCAAGTGCT TGTGGGAGCTGGGGTCAGCAGCCTGGCCTCCATCAAGTGCT < 41bp 0.497976721207695 0.71320054774891 NA NA prediction 0.42640109549782 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171227267 chr1:171227266 nonsynonymous SNV 0.983 5 20 hm7G_associated_SNPs_27475 0 0 0 0 2 FMO1 chr1:171227221 3'AG 171227221 Downstream 46bp 25002 chr1 171227266 171227266 1 + G A rs201227313 171227267 + 171227247 171227287 41 TGTGGGAGCTGGGGTCAGCGGCCTGGCCTCCATCAAGTGCT TGTGGGAGCTGGGGTCAGCAGCCTGGCCTCCATCAAGTGCT < 41bp 0.497976721207695 0.71320054774891 NA NA prediction 0.42640109549782 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171227267 chr1:171227266 nonsynonymous SNV 0.983 5 20 hm7G_associated_SNPs_27475 0 0 0 0 2 FMO1 chr1:171227358 5'GT 171227358 Upstream 93bp 25003 chrX 100505996 100505996 1 + C T UCEC 100505997 + 100505977 100506017 41 GTGGCTGGCTGTTCTGCATCGGGTCACCATTGCTGAGCAAG GTGGCTGGCTGTTCTGCATTGGGTCACCATTGCTGAGCAAG < 41bp 0.504860700307728 0.718057976449375 NA NA prediction 0.426394552283295 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100505997 chrX:100505996 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27476 0 0 0 0 2 DRP2 chrX:100505906 3'AG 100505906 Downstream 91bp 25004 chrX 100505996 100505996 1 + C T UCEC 100505997 + 100505977 100506017 41 GTGGCTGGCTGTTCTGCATCGGGTCACCATTGCTGAGCAAG GTGGCTGGCTGTTCTGCATTGGGTCACCATTGCTGAGCAAG < 41bp 0.504860700307728 0.718057976449375 NA NA prediction 0.426394552283295 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100505997 chrX:100505996 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27476 0 0 0 0 2 DRP2 chrX:100506072 5'GT 100506072 Upstream 77bp 25005 chr16 5041902 5041902 1 + C T READ 5041903 + 5041883 5041923 41 GGGTACCTCGCACATTCCGCGCTGGACGCCTGCCCCAGTCC GGGTACCTCGCACATTCCGTGCTGGACGCCTGCCCCAGTCC < 41bp 0.501469661202739 0.714665895305168 NA NA prediction 0.426392468204859 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5041903 chr16:5041902 nonsynonymous SNV 0.866 2 20 hm7G_associated_SNPs_27477 0 0 0 0 1 SEC14L5 chr16:5041839 3'AG 5041839 Downstream 64bp 25006 chr11 118983038 118983038 1 + G A BLCA 118983039 + 118983019 118983059 41 ATCTCCTCTTGTCCCACAGGGATCTGGGCCCCCAGAGCCGG ATCTCCTCTTGTCCCACAGAGATCTGGGCCCCCAGAGCCGG < 41bp 0.523286700923353 0.736481484548565 NA NA prediction 0.426389567250424 Functional Gain - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118983039 chr11:118983038 synonymous SNV . 0 20 hm7G_associated_SNPs_27479 0 0 1 0 2 C2CD2L chr11:118983038 3'AG 118983038 Downstream 1bp 25007 chr11 118983038 118983038 1 + G A BLCA 118983039 + 118983019 118983059 41 ATCTCCTCTTGTCCCACAGGGATCTGGGCCCCCAGAGCCGG ATCTCCTCTTGTCCCACAGAGATCTGGGCCCCCAGAGCCGG < 41bp 0.523286700923353 0.736481484548565 NA NA prediction 0.426389567250424 Functional Gain - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118983039 chr11:118983038 synonymous SNV . 0 20 hm7G_associated_SNPs_27479 0 0 1 0 2 C2CD2L chr11:118983102 5'GT 118983102 Upstream 65bp 25008 chr7 148907755 148907755 1 + G A UCEC 148907756 + 148907736 148907776 41 CTGTGTGTCCGGGGTCAGCGGGGCCTGGAGGAAAGAGCCAT CTGTGTGTCCGGGGTCAGCAGGGCCTGGAGGAAAGAGCCAT < 41bp 0.544207483438305 0.757396525970578 NA NA prediction 0.426378085064546 Functional Gain - ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148907756 chr7:148907755 nonsynonymous SNV 0.708 1 20 hm7G_associated_SNPs_27481 0 0 1 0 2 ZNF282 chr7:148907677 3'AG 148907677 Downstream 79bp 25009 chr7 148907755 148907755 1 + G A UCEC 148907756 + 148907736 148907776 41 CTGTGTGTCCGGGGTCAGCGGGGCCTGGAGGAAAGAGCCAT CTGTGTGTCCGGGGTCAGCAGGGCCTGGAGGAAAGAGCCAT < 41bp 0.544207483438305 0.757396525970578 NA NA prediction 0.426378085064546 Functional Gain - ZNF282 ENSG00000170265 CDS Human protein_coding chr7:148907756 chr7:148907755 nonsynonymous SNV 0.708 1 20 hm7G_associated_SNPs_27481 0 0 1 0 2 ZNF282 chr7:148907796 5'GT 148907796 Upstream 42bp 25010 chr1 175053005 175053005 1 + G T UCEC 175053006 + 175052986 175053026 41 GCGATATGGCCCCATGACAGGACAGGAGGTAGCTGAGGTCA GCGATATGGCCCCATGACATGACAGGAGGTAGCTGAGGTCA < 41bp 0.690969589461473 0.904157865440326 NA NA prediction 0.426376551957706 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175053006 chr1:175053005 stopgain 0.443 1 20 hm7G_associated_SNPs_27483 0 0 0 0 1 TNN chr1:175053071 5'GT 175053071 Upstream 67bp 25011 chr20 61292444 61292444 1 + G A rs149178040 61292445 + 61292425 61292465 41 GCTACGCGGTCATGAGAGCGGCGGAAATGCACCAGTTGAAG GCTACGCGGTCATGAGAGCAGCGGAAATGCACCAGTTGAAG < 41bp 0.535441295693673 0.748623480460324 NA NA prediction 0.426364369533301 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61292445 chr20:61292444 synonymous SNV . 0 20 hm7G_associated_SNPs_27485 0 0 0 0 2 SLCO4A1 chr20:61292416 3'AG 61292416 Downstream 29bp 25012 chr20 61292444 61292444 1 + G A rs149178040 61292445 + 61292425 61292465 41 GCTACGCGGTCATGAGAGCGGCGGAAATGCACCAGTTGAAG GCTACGCGGTCATGAGAGCAGCGGAAATGCACCAGTTGAAG < 41bp 0.535441295693673 0.748623480460324 NA NA prediction 0.426364369533301 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61292445 chr20:61292444 synonymous SNV . 0 20 hm7G_associated_SNPs_27485 0 0 0 0 2 SLCO4A1 chr20:61292527 5'GT 61292527 Upstream 84bp 25013 chrX 46712938 46712938 1 + G T LUAD 46712939 + 46712919 46712959 41 AAAAGACTACATGTTCAGTGGACTGAAGGATGAAACAGTAG AAAAGACTACATGTTCAGTTGACTGAAGGATGAAACAGTAG < 41bp 0.677498185647646 0.89067951236971 NA NA prediction 0.426362653444128 Functional Gain - RP2 ENSG00000102218 CDS Human protein_coding chrX:46712939 chrX:46712938 stopgain 1.000 1 20 hm7G_associated_SNPs_27486 0 0 1 0 1 RP2 chrX:46712911 3'AG 46712911 Downstream 28bp 25014 chr5 149576836 149576836 1 + G A SKCM 149576837 + 149576817 149576857 41 AGCCCCAGCGAGGAGTACTGGAGGTCAGGCAGCTGCTGGCC AGCCCCAGCGAGGAGTACTAGAGGTCAGGCAGCTGCTGGCC < 41bp 0.502758766361132 0.715932663103467 NA NA prediction 0.426347793484669 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149576837 chr5:149576836 stopgain 1.000 1 20 hm7G_associated_SNPs_27487 0 0 0 0 1 SLC6A7 chr5:149576839 5'GT 149576839 Upstream 4bp 25015 chr11 120345274 120345274 1 + G T COAD 120345275 + 120345255 120345295 41 CTTTATTTTGCCAGAATTTGGATTTAACAAAAAGGAAGATG CTTTATTTTGCCAGAATTTTGATTTAACAAAAAGGAAGATG < 41bp 0.385746321927252 0.713164387674846 NA NA prediction 0.426328775349692 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120345275 chr11:120345274 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27491 0 0 1 0 2 ARHGEF12 chr11:120345269 3'AG 120345269 Downstream 6bp 25016 chr11 120345274 120345274 1 + G T COAD 120345275 + 120345255 120345295 41 CTTTATTTTGCCAGAATTTGGATTTAACAAAAAGGAAGATG CTTTATTTTGCCAGAATTTTGATTTAACAAAAAGGAAGATG < 41bp 0.385746321927252 0.713164387674846 NA NA prediction 0.426328775349692 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120345275 chr11:120345274 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27491 0 0 1 0 2 ARHGEF12 chr11:120345344 5'GT 120345344 Upstream 71bp 25017 chr1 178482337 178482337 1 + G T UCEC 178482338 + 178482318 178482358 41 TCCATCATGTCGGCCAAGAGGGCAGAATTGAAGAAAACACA TCCATCATGTCGGCCAAGATGGCAGAATTGAAGAAAACACA < 41bp 0.679431007050843 0.892595349211864 NA NA prediction 0.426328684322042 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178482338 chr1:178482337 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_27492 0 0 0 0 2 TEX35 chr1:178482362 5'GT 178482362 Upstream 26bp 25018 chr1 178482337 178482337 1 + G T UCEC 178482338 + 178482318 178482358 41 TCCATCATGTCGGCCAAGAGGGCAGAATTGAAGAAAACACA TCCATCATGTCGGCCAAGATGGCAGAATTGAAGAAAACACA < 41bp 0.679431007050843 0.892595349211864 NA NA prediction 0.426328684322042 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178482338 chr1:178482337 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_27492 0 0 0 0 2 TEX35 chr1:178482386 5'GT 178482386 Upstream 50bp 25019 chr15 41230270 41230270 1 + G A rs200027644 41230271 + 41230251 41230291 41 CATCCCTGCTCAGCCCCGCGGCTGGACCTTCCTTCTGCATT CATCCCTGCTCAGCCCCGCAGCTGGACCTTCCTTCTGCATT < 41bp 0.501894552311373 0.715046409520506 NA NA prediction 0.426303714418265 Functional Gain - DLL4 ENSG00000128917 UTR3 Human protein_coding chr15:41230271 chr15:41230270 . . 0 20 hm7G_associated_SNPs_27497 0 0 0 0 1 DLL4 chr15:41230227 3'AG 41230227 Downstream 44bp 25020 chr1 16778393 16778393 1 + G A rs112350778 16778394 + 16778374 16778414 41 CCGGCCTGCCAGCACAGGAGGGCTGAGCCTGCTTCCCCCTC CCGGCCTGCCAGCACAGGAAGGCTGAGCCTGCTTCCCCCTC < 41bp 0.553190907995505 0.766341970507486 NA NA prediction 0.426302125023963 Functional Gain - NECAP2 ENSG00000157191 CDS Human protein_coding chr1:16778394 chr1:16778393 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_27498 0 0 0 1 1 NECAP2 chr1:16778333 3'AG 16778333 Downstream 61bp 25021 chr16 30780244 30780244 1 + G A UCEC 30780245 + 30780225 30780265 41 GCGGATGAGGATGCCCTGCGGCGCATTCGGCAGGCAGAGGA GCGGATGAGGATGCCCTGCAGCGCATTCGGCAGGCAGAGGA < 41bp 0.50948118468545 0.722629261668389 NA NA prediction 0.426296153965878 Functional Gain - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30780245 chr16:30780244 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27501 0 0 1 0 2 RNF40 chr16:30780159 3'AG 30780159 Downstream 86bp 25022 chr16 30780244 30780244 1 + G A UCEC 30780245 + 30780225 30780265 41 GCGGATGAGGATGCCCTGCGGCGCATTCGGCAGGCAGAGGA GCGGATGAGGATGCCCTGCAGCGCATTCGGCAGGCAGAGGA < 41bp 0.50948118468545 0.722629261668389 NA NA prediction 0.426296153965878 Functional Gain - RNF40 ENSG00000103549 CDS Human protein_coding chr16:30780245 chr16:30780244 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27501 0 0 1 0 2 RNF40 chr16:30780308 5'GT 30780308 Upstream 65bp 25023 chr1 152975724 152975724 1 + G T UCEC 152975725 + 152975705 152975745 41 CTGAGCCAGGCTGTACCAAGGTCCCTGAGCCAGGTTGTACC CTGAGCCAGGCTGTACCAATGTCCCTGAGCCAGGTTGTACC < 41bp 0.391749869559667 0.71314738216894 NA NA prediction 0.42629476433788 Functional Gain - SPRR3 ENSG00000163209 CDS Human protein_coding chr1:152975725 chr1:152975724 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_27502 0 0 0 0 1 SPRR3 chr1:152975701 3'AG 152975701 Downstream 24bp 25024 chr10 82276029 82276029 1 + C T COAD 82276030 + 82276010 82276050 41 GCTGGAAAGCTGGCTCCCGCGGAACATTTACATTGTGGCTG GCTGGAAAGCTGGCTCCCGTGGAACATTTACATTGTGGCTG < 41bp 0.503936524184848 0.717081314375848 NA NA prediction 0.426289580382 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82276030 chr10:82276029 nonsynonymous SNV 0.509 5 20 hm7G_associated_SNPs_27503 0 0 1 0 2 TSPAN14 chr10:82275960 3'AG 82275960 Downstream 70bp 25025 chr10 82276029 82276029 1 + C T COAD 82276030 + 82276010 82276050 41 GCTGGAAAGCTGGCTCCCGCGGAACATTTACATTGTGGCTG GCTGGAAAGCTGGCTCCCGTGGAACATTTACATTGTGGCTG < 41bp 0.503936524184848 0.717081314375848 NA NA prediction 0.426289580382 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82276030 chr10:82276029 nonsynonymous SNV 0.509 5 20 hm7G_associated_SNPs_27503 0 0 1 0 2 TSPAN14 chr10:82276079 5'GT 82276079 Upstream 51bp 25026 chr1 12776346 12776346 1 + G T LIHC 12776347 + 12776327 12776367 41 TTCCAGCTGCTGTTGACATGGGTGAGTTTTGTGCTTTATGT TTCCAGCTGCTGTTGACATTGGTGAGTTTTGTGCTTTATGT < 41bp 0.509949323628255 0.723087352841219 NA NA prediction 0.426276058425928 Functional Gain - AADACL3 ENSG00000188984 CDS Human protein_coding chr1:12776347 chr1:12776346 nonsynonymous SNV 0.760 0 20 hm7G_associated_SNPs_27505 0 0 0 0 1 AADACL3 chr1:12776347 5'GT 12776347 Upstream 2bp 25027 chr16 81053830 81053830 1 + C T COAD 81053831 + 81053811 81053851 41 ACTACTCCCAGACTCCGTACGCCTTCACGTCCTCCTCCATG ACTACTCCCAGACTCCGTATGCCTTCACGTCCTCCTCCATG < 41bp 0.502529816608151 0.715662180530498 NA NA prediction 0.426264727844694 Functional Gain - CENPN ENSG00000166451 CDS Human protein_coding chr16:81053831 chr16:81053830 synonymous SNV . 0 20 hm7G_associated_SNPs_27506 0 0 1 0 1 CENPN chr16:81053881 5'GT 81053881 Upstream 52bp 25028 chr21 43702515 43702515 1 + C T SKCM 43702516 + 43702496 43702536 41 ACCCTCCAGTCATGTTCTTCGATGAGCCCACCAGGTAAGTC ACCCTCCAGTCATGTTCTTTGATGAGCCCACCAGGTAAGTC < 41bp 0.502729879097924 0.715861157154587 NA NA prediction 0.426262556113326 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43702516 chr21:43702515 synonymous SNV . 0 20 hm7G_associated_SNPs_27507 0 0 0 0 1 ABCG1 chr21:43702529 5'GT 43702529 Upstream 15bp 25029 chr1 47583530 47583530 1 + G T HNSC 47583531 + 47583511 47583551 41 CTGGCTCCAGACCACTCAAGGCCTCCCCAGCCTGTTCGTCA CTGGCTCCAGACCACTCAATGCCTCCCCAGCCTGTTCGTCA < 41bp 0.394284498266751 0.713126674621238 NA NA prediction 0.426253349242476 Functional Gain - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47583531 chr1:47583530 nonsynonymous SNV 0.028 3 20 hm7G_associated_SNPs_27510 0 0 0 0 1 CYP4Z1 chr1:47583438 3'AG 47583438 Downstream 93bp 25030 chr11 3423924 3423924 1 + G A rs185392974 3423925 + 3423905 3423945 41 GTGATGCGCCTCCGCGAGCGGCCAGCCCTGCTGGTCAGCAG GTGATGCGCCTCCGCGAGCAGCCAGCCCTGCTGGTCAGCAG < 41bp 0.498889746273476 0.713125755951857 NA NA prediction 0.426251511903714 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423925 chr11:3423924 . . 0 20 hm7G_associated_SNPs_27511 0 0 0 0 2 TSSC2 chr11:3423843 3'AG 3423843 Downstream 82bp 25031 chr11 3423924 3423924 1 + G A rs185392974 3423925 + 3423905 3423945 41 GTGATGCGCCTCCGCGAGCGGCCAGCCCTGCTGGTCAGCAG GTGATGCGCCTCCGCGAGCAGCCAGCCCTGCTGGTCAGCAG < 41bp 0.498889746273476 0.713125755951857 NA NA prediction 0.426251511903714 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423925 chr11:3423924 . . 0 20 hm7G_associated_SNPs_27511 0 0 0 0 2 TSSC2 chr11:3423959 5'GT 3423959 Upstream 36bp 25032 chr4 1343557 1343557 1 + G A STAD 1343558 + 1343538 1343578 41 CTGAGGCAGGCGACCACCCGGGCCGTGGAAGGGTGGAATGA CTGAGGCAGGCGACCACCCAGGCCGTGGAAGGGTGGAATGA < 41bp 0.557957200099499 0.771077488043896 NA NA prediction 0.426240575888793 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1343558 chr4:1343557 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_27512 0 0 0 0 1 UVSSA chr4:1343642 5'GT 1343642 Upstream 86bp 25033 chr17 37899684 37899684 1 + C T COAD 37899685 + 37899665 37899705 41 AAATGGTCTCCAGCTGTCTCGATGCACACACTGGTATATCC AAATGGTCTCCAGCTGTCTTGATGCACACACTGGTATATCC < 41bp 0.502606509494598 0.715725443477435 NA NA prediction 0.426237867965675 Functional Gain - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37899685 chr17:37899684 synonymous SNV . 0 20 hm7G_associated_SNPs_27514 0 0 0 0 2 GRB7 chr17:37899646 3'AG 37899646 Downstream 39bp 25034 chr17 37899684 37899684 1 + C T COAD 37899685 + 37899665 37899705 41 AAATGGTCTCCAGCTGTCTCGATGCACACACTGGTATATCC AAATGGTCTCCAGCTGTCTTGATGCACACACTGGTATATCC < 41bp 0.502606509494598 0.715725443477435 NA NA prediction 0.426237867965675 Functional Gain - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37899685 chr17:37899684 synonymous SNV . 0 20 hm7G_associated_SNPs_27514 0 0 0 0 2 GRB7 chr17:37899723 5'GT 37899723 Upstream 40bp 25035 chr18 77193698 77193698 1 + G A BLCA 77193699 + 77193679 77193719 41 GAGACGGAGGGCAGCCGGGGGGCCGTGAAGGCGTCGGCCGG GAGACGGAGGGCAGCCGGGAGGCCGTGAAGGCGTCGGCCGG < 41bp 0.515183025343499 0.728296921951037 NA NA prediction 0.426227793215076 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77193699 chr18:77193698 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27515 0 0 0 0 1 NFATC1 chr18:77193738 5'GT 77193738 Upstream 41bp 25036 chr17 61744359 61744359 1 + C T COAD 61744360 + 61744340 61744380 41 GGATCAAGGCTTCCCAGTCCGCAGGGGATATAAATACTATC GGATCAAGGCTTCCCAGTCTGCAGGGGATATAAATACTATC < 41bp 0.503004764297326 0.716111844806347 NA NA prediction 0.426214161018041 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61744360 chr17:61744359 synonymous SNV . 0 20 hm7G_associated_SNPs_27517 0 0 0 0 2 MAP3K3 chr17:61744300 3'AG 61744300 Downstream 60bp 25037 chr17 61744359 61744359 1 + C T COAD 61744360 + 61744340 61744380 41 GGATCAAGGCTTCCCAGTCCGCAGGGGATATAAATACTATC GGATCAAGGCTTCCCAGTCTGCAGGGGATATAAATACTATC < 41bp 0.503004764297326 0.716111844806347 NA NA prediction 0.426214161018041 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61744360 chr17:61744359 synonymous SNV . 0 20 hm7G_associated_SNPs_27517 0 0 0 0 2 MAP3K3 chr17:61744420 5'GT 61744420 Upstream 62bp 25038 chr11 67808798 67808798 1 + G A COAD 67808799 + 67808779 67808819 41 AGCTCTTTCTGCCCACAGCGGCTGCCTACACCTGCGTGAGT AGCTCTTTCTGCCCACAGCAGCTGCCTACACCTGCGTGAGT < 41bp 0.528589186344312 0.741694032847588 NA NA prediction 0.426209693006553 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67808799 chr11:67808798 synonymous SNV . 0 20 hm7G_associated_SNPs_27520 1 0 1 0 2 TCIRG1 chr11:67808735 3'AG 67808735 Downstream 64bp 25039 chr11 67808798 67808798 1 + G A COAD 67808799 + 67808779 67808819 41 AGCTCTTTCTGCCCACAGCGGCTGCCTACACCTGCGTGAGT AGCTCTTTCTGCCCACAGCAGCTGCCTACACCTGCGTGAGT < 41bp 0.528589186344312 0.741694032847588 NA NA prediction 0.426209693006553 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67808799 chr11:67808798 synonymous SNV . 0 20 hm7G_associated_SNPs_27520 1 0 1 0 2 TCIRG1 chr11:67808855 5'GT 67808855 Upstream 58bp 25040 chr4 647941 647941 1 - C T UCEC 647940 - 647920 647960 41 CCTCCCCTAAGACTCACCCGGCCATCAGGCGTGCGTGGGCC CCTCCCCTAAGACTCACCCAGCCATCAGGCGTGCGTGGGCC < 41bp 0.532870733238558 0.745975475889697 NA NA prediction 0.426209485302278 Functional Gain - PDE6B ENSG00000133256 CDS Human antisense chr4:647940 chr4:647941 nonsynonymous SNV 0.159 3 20 hm7G_associated_SNPs_27521 0 0 0 0 2 PDE6B chr4:647854 5'GT 647854 Upstream 88bp 25041 chr4 647941 647941 1 - C T UCEC 647940 - 647920 647960 41 CCTCCCCTAAGACTCACCCGGCCATCAGGCGTGCGTGGGCC CCTCCCCTAAGACTCACCCAGCCATCAGGCGTGCGTGGGCC < 41bp 0.532870733238558 0.745975475889697 NA NA prediction 0.426209485302278 Functional Gain - PDE6B ENSG00000133256 CDS Human antisense chr4:647940 chr4:647941 nonsynonymous SNV 0.159 3 20 hm7G_associated_SNPs_27521 0 0 0 0 2 PDE6B chr4:648002 3'AG 648002 Downstream 62bp 25042 chr5 64077803 64077803 1 + C T UCEC 64077804 + 64077784 64077824 41 CTGGTTTCATAGTCCAAGGCGGAGATCCTACTGGCACAGGG CTGGTTTCATAGTCCAAGGTGGAGATCCTACTGGCACAGGG < 41bp 0.53065036843163 0.743754163112308 NA NA prediction 0.426207589361356 Functional Gain - CWC27 ENSG00000153015 CDS Human protein_coding chr5:64077804 chr5:64077803 synonymous SNV . 0 20 hm7G_associated_SNPs_27522 0 0 1 0 2 CWC27 chr5:64077748 3'AG 64077748 Downstream 56bp 25043 chr5 64077803 64077803 1 + C T UCEC 64077804 + 64077784 64077824 41 CTGGTTTCATAGTCCAAGGCGGAGATCCTACTGGCACAGGG CTGGTTTCATAGTCCAAGGTGGAGATCCTACTGGCACAGGG < 41bp 0.53065036843163 0.743754163112308 NA NA prediction 0.426207589361356 Functional Gain - CWC27 ENSG00000153015 CDS Human protein_coding chr5:64077804 chr5:64077803 synonymous SNV . 0 20 hm7G_associated_SNPs_27522 0 0 1 0 2 CWC27 chr5:64077860 5'GT 64077860 Upstream 58bp 25044 chr16 70688526 70688526 1 + G A UCEC 70688527 + 70688507 70688547 41 ATGAGGAGTGCACTGTCACGGGTTTTCTGCGGGACAAGCTG ATGAGGAGTGCACTGTCACAGGTTTTCTGCGGGACAAGCTG < 41bp 0.486910080827923 0.713101514098802 NA NA prediction 0.426203028197605 Functional Gain - IL34 ENSG00000157368 CDS Human protein_coding chr16:70688527 chr16:70688526 synonymous SNV . 0 20 hm7G_associated_SNPs_27523 0 0 0 0 2 IL34 chr16:70688441 3'AG 70688441 Downstream 86bp 25045 chr16 70688526 70688526 1 + G A UCEC 70688527 + 70688507 70688547 41 ATGAGGAGTGCACTGTCACGGGTTTTCTGCGGGACAAGCTG ATGAGGAGTGCACTGTCACAGGTTTTCTGCGGGACAAGCTG < 41bp 0.486910080827923 0.713101514098802 NA NA prediction 0.426203028197605 Functional Gain - IL34 ENSG00000157368 CDS Human protein_coding chr16:70688527 chr16:70688526 synonymous SNV . 0 20 hm7G_associated_SNPs_27523 0 0 0 0 2 IL34 chr16:70688574 5'GT 70688574 Upstream 49bp 25046 chr16 19184801 19184801 1 + G T OV 19184802 + 19184782 19184822 41 CTGTGCAGATGGACCTGCCGGCACTGCTGTCAGAAGTGCTA CTGTGCAGATGGACCTGCCTGCACTGCTGTCAGAAGTGCTA < 41bp 0.56748652660283 0.780583855743104 NA NA prediction 0.426194658280548 Functional Gain - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19184802 chr16:19184801 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_27525 0 0 0 0 2 SYT17 chr16:19184752 3'AG 19184752 Downstream 50bp 25047 chr16 19184801 19184801 1 + G T OV 19184802 + 19184782 19184822 41 CTGTGCAGATGGACCTGCCGGCACTGCTGTCAGAAGTGCTA CTGTGCAGATGGACCTGCCTGCACTGCTGTCAGAAGTGCTA < 41bp 0.56748652660283 0.780583855743104 NA NA prediction 0.426194658280548 Functional Gain - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19184802 chr16:19184801 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_27525 0 0 0 0 2 SYT17 chr16:19184900 5'GT 19184900 Upstream 100bp 25048 chr3 184102421 184102421 1 + G A OV 184102422 + 184102402 184102442 41 CACCAAGGACTTCCCAGACGGAGAGCTTCGGGGGCACGTGG CACCAAGGACTTCCCAGACAGAGAGCTTCGGGGGCACGTGG < 41bp 0.496332482794555 0.713091763142456 NA NA prediction 0.426183526284912 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184102422 chr3:184102421 nonsynonymous SNV 0.955 4 20 hm7G_associated_SNPs_27527 0 0 1 0 2 CHRD chr3:184102325 3'AG 184102325 Downstream 97bp 25049 chr3 184102421 184102421 1 + G A OV 184102422 + 184102402 184102442 41 CACCAAGGACTTCCCAGACGGAGAGCTTCGGGGGCACGTGG CACCAAGGACTTCCCAGACAGAGAGCTTCGGGGGCACGTGG < 41bp 0.496332482794555 0.713091763142456 NA NA prediction 0.426183526284912 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184102422 chr3:184102421 nonsynonymous SNV 0.955 4 20 hm7G_associated_SNPs_27527 0 0 1 0 2 CHRD chr3:184102481 5'GT 184102481 Upstream 61bp 25050 chrX 152815549 152815549 1 + C T CESC 152815550 + 152815530 152815570 41 CGCCAGGTGGGCAATAAGACGGAGTGCGCCCTGCTGGGCTT CGCCAGGTGGGCAATAAGATGGAGTGCGCCCTGCTGGGCTT < 41bp 0.500536828338992 0.7136212509289 NA NA prediction 0.426168845179816 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152815550 chrX:152815549 nonsynonymous SNV 0.920 4 20 hm7G_associated_SNPs_27528 0 0 0 0 1 ATP2B3 chrX:152815503 3'AG 152815503 Downstream 47bp 25051 chr7 100151064 100151064 1 + C T UCEC 100151065 + 100151045 100151085 41 CCCAGAAGGGAAGCCCCTTCGGACACTTCTGGGTGATCCTG CCCAGAAGGGAAGCCCCTTTGGACACTTCTGGGTGATCCTG < 41bp 0.503834097755949 0.716916759068896 NA NA prediction 0.426165322625893 Functional Gain - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151065 chr7:100151064 nonsynonymous SNV 0.810 4 20 hm7G_associated_SNPs_27529 0 0 0 0 2 AGFG2 chr7:100150970 3'AG 100150970 Downstream 95bp 25052 chr7 100151064 100151064 1 + C T UCEC 100151065 + 100151045 100151085 41 CCCAGAAGGGAAGCCCCTTCGGACACTTCTGGGTGATCCTG CCCAGAAGGGAAGCCCCTTTGGACACTTCTGGGTGATCCTG < 41bp 0.503834097755949 0.716916759068896 NA NA prediction 0.426165322625893 Functional Gain - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151065 chr7:100151064 nonsynonymous SNV 0.810 4 20 hm7G_associated_SNPs_27529 0 0 0 0 2 AGFG2 chr7:100151123 5'GT 100151123 Upstream 60bp 25053 chr11 71949338 71949338 1 + G T LUAD 71949339 + 71949319 71949359 41 GGAGGACTTGGAGGAGGCTGGGGTGCAGGACCCGGCTCACA GGAGGACTTGGAGGAGGCTTGGGTGCAGGACCCGGCTCACA < 41bp 0.682262937681531 0.895342595244527 NA NA prediction 0.426159315125991 Functional Gain - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71949339 chr11:71949338 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27531 0 0 1 0 1 INPPL1 chr11:71949307 3'AG 71949307 Downstream 32bp 25054 chr11 61250262 61250262 1 + G A rs115043425 61250263 + 61250243 61250283 41 GGCGGGAGAAGCCCAGTGCGGGTCCCCCCACCAAGGAGGTC GGCGGGAGAAGCCCAGTGCAGGTCCCCCCACCAAGGAGGTC < 41bp 0.566392398142527 0.779469858057924 NA NA prediction 0.426154919830794 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61250263 chr11:61250262 synonymous SNV . 0 20 hm7G_associated_SNPs_27533 0 0 0 0 1 PPP1R32 chr11:61250280 5'GT 61250280 Upstream 19bp 25055 chr2 220504287 220504287 1 + G A LGG 220504288 + 220504268 220504308 41 CTCATTGGCTCCCTGGGGGGGCTCTGTGGGCTGTTTGGGTT CTCATTGGCTCCCTGGGGGAGCTCTGTGGGCTGTTTGGGTT < 41bp 0.549637409670179 0.762709083495571 NA NA prediction 0.426143347650782 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220504288 chr2:220504287 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_27534 0 0 0 0 1 SLC4A3 chr2:220504204 3'AG 220504204 Downstream 84bp 25056 chr1 26882081 26882081 1 + G A BRCA 26882082 + 26882062 26882102 41 GAAGCCCAGAGCCTCTTGCGGGCCCTGTTCAAGCGGAATCC GAAGCCCAGAGCCTCTTGCAGGCCCTGTTCAAGCGGAATCC < 41bp 0.525011571072874 0.738076842137057 NA NA prediction 0.426130542128367 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26882082 chr1:26882081 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_27535 0 0 1 0 2 RPS6KA1 chr1:26882028 3'AG 26882028 Downstream 54bp 25057 chr1 26882081 26882081 1 + G A BRCA 26882082 + 26882062 26882102 41 GAAGCCCAGAGCCTCTTGCGGGCCCTGTTCAAGCGGAATCC GAAGCCCAGAGCCTCTTGCAGGCCCTGTTCAAGCGGAATCC < 41bp 0.525011571072874 0.738076842137057 NA NA prediction 0.426130542128367 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26882082 chr1:26882081 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_27535 0 0 1 0 2 RPS6KA1 chr1:26882116 5'GT 26882116 Upstream 36bp 25058 chr16 30387496 30387496 1 + G A SKCM 30387497 + 30387477 30387517 41 GATCGACCAGAACCGTGATGGTATTATAGACAAGGAGGACC GATCGACCAGAACCGTGATAGTATTATAGACAAGGAGGACC < 41bp 0.504162652188879 0.71722608251803 NA NA prediction 0.426126860658302 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387497 chr16:30387496 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27537 0 0 0 0 2 MYLPF chr16:30387466 3'AG 30387466 Downstream 31bp 25059 chr16 30387496 30387496 1 + G A SKCM 30387497 + 30387477 30387517 41 GATCGACCAGAACCGTGATGGTATTATAGACAAGGAGGACC GATCGACCAGAACCGTGATAGTATTATAGACAAGGAGGACC < 41bp 0.504162652188879 0.71722608251803 NA NA prediction 0.426126860658302 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387497 chr16:30387496 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27537 0 0 0 0 2 MYLPF chr16:30387541 5'GT 30387541 Upstream 46bp 25060 chr15 91485697 91485697 1 + C T LUAD 91485698 + 91485678 91485718 41 CCTGAGCATACTGGGAACTCGGCGAGTAGTCTCCATCCTGG CCTGAGCATACTGGGAACTTGGCGAGTAGTCTCCATCCTGG < 41bp 0.502870843713184 0.715930046383391 NA NA prediction 0.426118405340413 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91485698 chr15:91485697 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_27538 0 0 1 0 1 UNC45A chr15:91485667 3'AG 91485667 Downstream 31bp 25061 chr3 193384113 193384113 1 + G T LIHC 193384114 + 193384094 193384134 41 AATGATGTGGTCTTGTTTTGGCGTATACAGCGCATGCTTGC AATGATGTGGTCTTGTTTTTGCGTATACAGCGCATGCTTGC < 41bp 0.391683988526148 0.713050723750067 NA NA prediction 0.426101447500134 Functional Gain - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193384114 chr3:193384113 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27540 0 0 1 0 2 OPA1 chr3:193384085 3'AG 193384085 Downstream 29bp 25062 chr3 193384113 193384113 1 + G T LIHC 193384114 + 193384094 193384134 41 AATGATGTGGTCTTGTTTTGGCGTATACAGCGCATGCTTGC AATGATGTGGTCTTGTTTTTGCGTATACAGCGCATGCTTGC < 41bp 0.391683988526148 0.713050723750067 NA NA prediction 0.426101447500134 Functional Gain - OPA1 ENSG00000198836 CDS Human protein_coding chr3:193384114 chr3:193384113 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27540 0 0 1 0 2 OPA1 chr3:193384178 5'GT 193384178 Upstream 66bp 25063 chr2 69201750 69201750 1 + G T rs573913250 69201751 + 69201731 69201771 41 TTAAGTACAAATATGAGAAGGCTTCTCATTCAGGTCCATGC TTAAGTACAAATATGAGAATGCTTCTCATTCAGGTCCATGC < 41bp 0.565310379225171 0.778349403860952 NA NA prediction 0.426078049271562 Functional Gain - GKN1 ENSG00000169605 UTR5 Human protein_coding chr2:69201751 chr2:69201750 . . 0 20 hm7G_associated_SNPs_27542 0 0 0 0 1 GKN1 chr2:69201821 5'GT 69201821 Upstream 72bp 25064 chrX 1471069 1471069 1 + G A rs17880680 1471070 + 1471050 1471090 41 TCTTGAGCTGCAGCTGGGCGGTAGGCCCGGGGGCCCCCGCG TCTTGAGCTGCAGCTGGGCAGTAGGCCCGGGGGCCCCCGCG < 41bp 0.545053770701371 0.758091193490527 NA NA prediction 0.426074845578313 Functional Gain - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1471070 chrX:1471069 synonymous SNV . 0 20 hm7G_associated_SNPs_27543 0 0 0 0 2 IL3RA chrX:1470993 3'AG 1470993 Downstream 77bp 25065 chrX 1471069 1471069 1 + G A rs17880680 1471070 + 1471050 1471090 41 TCTTGAGCTGCAGCTGGGCGGTAGGCCCGGGGGCCCCCGCG TCTTGAGCTGCAGCTGGGCAGTAGGCCCGGGGGCCCCCGCG < 41bp 0.545053770701371 0.758091193490527 NA NA prediction 0.426074845578313 Functional Gain - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1471070 chrX:1471069 synonymous SNV . 0 20 hm7G_associated_SNPs_27543 0 0 0 0 2 IL3RA chrX:1471125 5'GT 1471125 Upstream 57bp 25066 chr19 45851233 45851233 1 + G T rs180782823 45851234 + 45851214 45851254 41 GAGCAGCAGCTGCTCAGCAGGGTGGCTATGAGATCCCTGCC GAGCAGCAGCTGCTCAGCATGGTGGCTATGAGATCCCTGCC < 41bp 0.697722170588298 0.910753627117154 NA NA prediction 0.426062913057713 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45851234 chr19:45851233 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_27545 0 0 0 0 1 KLC3 chr19:45851199 3'AG 45851199 Downstream 35bp 25067 chr1 167190147 167190147 1 + G T UCEC 167190148 + 167190128 167190168 41 ATTCAAAATGGCGGACGGAGGAGCAGCGAGTCAAGATGAGA ATTCAAAATGGCGGACGGATGAGCAGCGAGTCAAGATGAGA < 41bp 0.409634094531544 0.713030526255789 NA NA prediction 0.426061052511577 Functional Gain - POU2F1 ENSG00000143190 CDS Human protein_coding chr1:167190148 chr1:167190147 stopgain 1.000 0 20 hm7G_associated_SNPs_27546 0 0 1 0 1 POU2F1 chr1:167190195 5'GT 167190195 Upstream 49bp 25068 chr16 31382988 31382988 1 + C T rs189986648 31382989 + 31382969 31383009 41 TGACCTTGGACCTGGCCCTCGACCCTGGCCGCCTGAGTCCC TGACCTTGGACCTGGCCCTTGACCCTGGCCGCCTGAGTCCC < 41bp 0.501935237180995 0.714965007439145 NA NA prediction 0.4260595405163 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382989 chr16:31382988 synonymous SNV . 0 20 hm7G_associated_SNPs_27548 0 0 0 0 1 ITGAX chr16:31382951 3'AG 31382951 Downstream 38bp 25069 chr2 119750748 119750748 1 + G A LUAD 119750749 + 119750729 119750769 41 GGCAGTAGTAACCGAGGCCGGGCTGAAGTTTACTACAGTGG GGCAGTAGTAACCGAGGCCAGGCTGAAGTTTACTACAGTGG < 41bp 0.545743025003209 0.758764860597406 NA NA prediction 0.426043671188394 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119750749 chr2:119750748 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_27549 0 0 0 0 1 MARCO chr2:119750700 3'AG 119750700 Downstream 49bp 25070 chr19 6828111 6828111 1 + G A SKCM 6828112 + 6828092 6828132 41 TTCTCAGAGAGCCAACAACGGGAGGTTCACCCTGCGGGACC TTCTCAGAGAGCCAACAACAGGAGGTTCACCCTGCGGGACC < 41bp 0.512603780474377 0.725625133253632 NA NA prediction 0.42604270555851 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828112 chr19:6828111 nonsynonymous SNV 0.381 3 20 hm7G_associated_SNPs_27550 0 0 0 0 2 VAV1 chr19:6828087 3'AG 6828087 Downstream 25bp 25071 chr19 6828111 6828111 1 + G A SKCM 6828112 + 6828092 6828132 41 TTCTCAGAGAGCCAACAACGGGAGGTTCACCCTGCGGGACC TTCTCAGAGAGCCAACAACAGGAGGTTCACCCTGCGGGACC < 41bp 0.512603780474377 0.725625133253632 NA NA prediction 0.42604270555851 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828112 chr19:6828111 nonsynonymous SNV 0.381 3 20 hm7G_associated_SNPs_27550 0 0 0 0 2 VAV1 chr19:6828182 5'GT 6828182 Upstream 72bp 25072 chr19 971943 971943 1 + G A rs200079740 971944 + 971924 971964 41 CAACAAAGGAGGCGGCGGCGGCGGCGGCAGCAGCAGCAACG CAACAAAGGAGGCGGCGGCAGCGGCGGCAGCAGCAGCAACG < 41bp 0.495633249678676 0.713015077502045 NA NA prediction 0.426030155004089 Functional Gain - ARID3A ENSG00000116017 CDS Human protein_coding chr19:971944 chr19:971943 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_27552 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 66bp 25073 chr20 2840755 2840755 1 + C T SKCM 2840756 + 2840736 2840776 41 CTAGTGTGAGGCCAGTGCTCGATATATACTCTGCTTCCGGC CTAGTGTGAGGCCAGTGCTTGATATATACTCTGCTTCCGGC < 41bp 0.497760992234482 0.713002628350683 NA NA prediction 0.426005256701366 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840756 chr20:2840755 synonymous SNV . 0 20 hm7G_associated_SNPs_27557 0 0 1 0 2 VPS16 chr20:2840700 3'AG 2840700 Downstream 56bp 25074 chr20 2840755 2840755 1 + C T SKCM 2840756 + 2840736 2840776 41 CTAGTGTGAGGCCAGTGCTCGATATATACTCTGCTTCCGGC CTAGTGTGAGGCCAGTGCTTGATATATACTCTGCTTCCGGC < 41bp 0.497760992234482 0.713002628350683 NA NA prediction 0.426005256701366 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840756 chr20:2840755 synonymous SNV . 0 20 hm7G_associated_SNPs_27557 0 0 1 0 2 VPS16 chr20:2840797 5'GT 2840797 Upstream 43bp 25075 chr22 32229913 32229913 1 + G T UCEC 32229914 + 32229894 32229934 41 TCCATAGGTATGAATCCTAGGACCCAGAATAAGGATTCTCT TCCATAGGTATGAATCCTATGACCCAGAATAAGGATTCTCT < 41bp 0.393750561924072 0.713000756715982 NA NA prediction 0.426001513431964 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32229914 chr22:32229913 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_27559 1 0 1 0 2 DEPDC5 chr22:32229901 3'AG 32229901 Downstream 13bp 25076 chr22 32229913 32229913 1 + G T UCEC 32229914 + 32229894 32229934 41 TCCATAGGTATGAATCCTAGGACCCAGAATAAGGATTCTCT TCCATAGGTATGAATCCTATGACCCAGAATAAGGATTCTCT < 41bp 0.393750561924072 0.713000756715982 NA NA prediction 0.426001513431964 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32229914 chr22:32229913 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_27559 1 0 1 0 2 DEPDC5 chr22:32229966 5'GT 32229966 Upstream 54bp 25077 chr19 34984430 34984430 1 + G A SKCM 34984431 + 34984411 34984451 41 GGGCAAGTCCTACCACCCAGGCTGCTTCCGGTGCTCCGTGT GGGCAAGTCCTACCACCCAAGCTGCTTCCGGTGCTCCGTGT < 41bp 0.565330339599156 0.778328428597866 NA NA prediction 0.425996177997421 Functional Gain - WTIP ENSG00000142279 CDS Human protein_coding chr19:34984431 chr19:34984430 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27560 0 0 0 0 2 WTIP chr19:34984397 3'AG 34984397 Downstream 34bp 25078 chr19 34984430 34984430 1 + G A SKCM 34984431 + 34984411 34984451 41 GGGCAAGTCCTACCACCCAGGCTGCTTCCGGTGCTCCGTGT GGGCAAGTCCTACCACCCAAGCTGCTTCCGGTGCTCCGTGT < 41bp 0.565330339599156 0.778328428597866 NA NA prediction 0.425996177997421 Functional Gain - WTIP ENSG00000142279 CDS Human protein_coding chr19:34984431 chr19:34984430 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27560 0 0 0 0 2 WTIP chr19:34984527 5'GT 34984527 Upstream 98bp 25079 chr20 5948574 5948574 1 + G T SKCM 5948575 + 5948555 5948595 41 AACAAAGAGTTCTGAGGATGGGTGTAAGCATGGAATGTTGA AACAAAGAGTTCTGAGGATTGGTGTAAGCATGGAATGTTGA < 41bp 0.670229926182592 0.883227266603423 NA NA prediction 0.425994680841662 Functional Gain - MCM8 ENSG00000125885 CDS Human protein_coding chr20:5948575 chr20:5948574 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_27561 0 0 1 0 3 MCM8 chr20:5948476 3'AG 5948476 Downstream 99bp 25080 chr20 5948574 5948574 1 + G T SKCM 5948575 + 5948555 5948595 41 AACAAAGAGTTCTGAGGATGGGTGTAAGCATGGAATGTTGA AACAAAGAGTTCTGAGGATTGGTGTAAGCATGGAATGTTGA < 41bp 0.670229926182592 0.883227266603423 NA NA prediction 0.425994680841662 Functional Gain - MCM8 ENSG00000125885 CDS Human protein_coding chr20:5948575 chr20:5948574 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_27561 0 0 1 0 3 MCM8 chr20:5948524 3'AG 5948524 Downstream 51bp 25081 chr20 5948574 5948574 1 + G T SKCM 5948575 + 5948555 5948595 41 AACAAAGAGTTCTGAGGATGGGTGTAAGCATGGAATGTTGA AACAAAGAGTTCTGAGGATTGGTGTAAGCATGGAATGTTGA < 41bp 0.670229926182592 0.883227266603423 NA NA prediction 0.425994680841662 Functional Gain - MCM8 ENSG00000125885 CDS Human protein_coding chr20:5948575 chr20:5948574 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_27561 0 0 1 0 3 MCM8 chr20:5948671 5'GT 5948671 Upstream 98bp 25082 chr3 52325879 52325879 1 + C T GBM 52325880 + 52325860 52325900 41 CCAGGAGTTGAACACCATTCGGAAGGCCCTGTCCCAGCTCA CCAGGAGTTGAACACCATTTGGAAGGCCCTGTCCCAGCTCA < 41bp 0.502833772432444 0.715831072674546 NA NA prediction 0.425994600484204 Functional Gain - GLYCTK ENSG00000168237 CDS Human protein_coding chr3:52325880 chr3:52325879 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_27562 0 0 1 0 1 GLYCTK chr3:52325938 5'GT 52325938 Upstream 60bp 25083 chr6 167708154 167708154 1 + G A LUSC 167708155 + 167708135 167708175 41 TCTCCATGTGTGGCTACGTGGCCTTCTCCGTGGGCAACTTC TCTCCATGTGTGGCTACGTAGCCTTCTCCGTGGGCAACTTC < 41bp 0.5331250172189 0.746120812140543 NA NA prediction 0.425991589843286 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167708155 chr6:167708154 synonymous SNV . 0 20 hm7G_associated_SNPs_27564 0 0 1 0 1 UNC93A chr6:167708186 5'GT 167708186 Upstream 33bp 25084 chr22 25623919 25623919 1 + G A rs146090932 25623920 + 25623900 25623940 41 GGACCAGCAGCCGAAGGACGGACTCCCTCAGCTCCCTGAGG GGACCAGCAGCCGAAGGACAGACTCCCTCAGCTCCCTGAGG < 41bp 0.505153651000577 0.718149166596983 NA NA prediction 0.425991031192813 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623920 chr22:25623919 synonymous SNV . 0 20 hm7G_associated_SNPs_27565 0 0 0 0 2 CRYBB2 chr22:25623820 3'AG 25623820 Downstream 100bp 25085 chr22 25623919 25623919 1 + G A rs146090932 25623920 + 25623900 25623940 41 GGACCAGCAGCCGAAGGACGGACTCCCTCAGCTCCCTGAGG GGACCAGCAGCCGAAGGACAGACTCCCTCAGCTCCCTGAGG < 41bp 0.505153651000577 0.718149166596983 NA NA prediction 0.425991031192813 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25623920 chr22:25623919 synonymous SNV . 0 20 hm7G_associated_SNPs_27565 0 0 0 0 2 CRYBB2 chr22:25623952 5'GT 25623952 Upstream 34bp 25086 chr11 46747500 46747500 1 + G A SKCM 46747501 + 46747481 46747521 41 AGCAGTGTGTCCCTGATCGGGGGCAGCAGTACCAGGGGCGC AGCAGTGTGTCCCTGATCGAGGGCAGCAGTACCAGGGGCGC < 41bp 0.560831721047874 0.773818311073705 NA NA prediction 0.425973180051662 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46747501 chr11:46747500 synonymous SNV . 0 20 hm7G_associated_SNPs_27566 0 0 1 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 92bp 25087 chr16 68373428 68373428 1 + C T rs12926948 68373429 + 68373409 68373449 41 TGAACCAGGTGTCACCAGCCGACTTTACAGTCCTCAGCGAT TGAACCAGGTGTCACCAGCTGACTTTACAGTCCTCAGCGAT < 41bp 0.513687097768266 0.726666391898444 NA NA prediction 0.425958588260355 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68373429 chr16:68373428 synonymous SNV . 0 20 hm7G_associated_SNPs_27569 0 0 1 0 1 PRMT7 chr16:68373466 5'GT 68373466 Upstream 39bp 25088 chr1 156838334 156838334 1 + G A rs114320051 156838335 + 156838315 156838355 41 TCCAGGTGCCCAATGCCTCGGTGGATGTGGGGGACGACGTG TCCAGGTGCCCAATGCCTCAGTGGATGTGGGGGACGACGTG < 41bp 0.512432778514838 0.725405628267485 NA NA prediction 0.425945699505293 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156838335 chr1:156838334 synonymous SNV . 0 20 hm7G_associated_SNPs_27570 1 0 1 0 1 NTRK1 chr1:156838297 3'AG 156838297 Downstream 38bp 25089 chr12 110340842 110340842 1 + C T UCEC 110340843 + 110340823 110340863 41 TGTTCTCAGATGGCGCTCCCGACGCTGCCGTCCTACTGGTG TGTTCTCAGATGGCGCTCCTGACGCTGCCGTCCTACTGGTG < 41bp 0.500840797908873 0.713813226722097 NA NA prediction 0.425944857626449 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110340843 chr12:110340842 nonsynonymous SNV 0.063 4 20 hm7G_associated_SNPs_27571 0 0 1 0 1 TCHP chr12:110340832 3'AG 110340832 Downstream 11bp 25090 chr2 131117218 131117218 1 + G A UCEC 131117219 + 131117199 131117239 41 CGAGAGATAGAGAATGGGCGGGTAGGTGCCCTCTGCCCCCA CGAGAGATAGAGAATGGGCAGGTAGGTGCCCTCTGCCCCCA < 41bp 0.531942923073028 0.744911294616708 NA NA prediction 0.42593674308736 Functional Gain - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131117219 chr2:131117218 nonsynonymous SNV 0.443 2 20 hm7G_associated_SNPs_27574 0 0 0 0 2 PTPN18 chr2:131117181 3'AG 131117181 Downstream 38bp 25091 chr2 131117218 131117218 1 + G A UCEC 131117219 + 131117199 131117239 41 CGAGAGATAGAGAATGGGCGGGTAGGTGCCCTCTGCCCCCA CGAGAGATAGAGAATGGGCAGGTAGGTGCCCTCTGCCCCCA < 41bp 0.531942923073028 0.744911294616708 NA NA prediction 0.42593674308736 Functional Gain - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131117219 chr2:131117218 nonsynonymous SNV 0.443 2 20 hm7G_associated_SNPs_27574 0 0 0 0 2 PTPN18 chr2:131117219 5'GT 131117219 Upstream 2bp 25092 chrX 66905851 66905851 1 + G T UCEC 66905852 + 66905832 66905872 41 TCTTGTATTTGTTCTCCCAGGGAAACAGAAGTACCTGTGCG TCTTGTATTTGTTCTCCCATGGAAACAGAAGTACCTGTGCG < 41bp 0.38440547719861 0.712968219669295 NA NA prediction 0.42593643933859 Functional Gain - AR;AR ENSG00000169083 splicing Human protein_coding chrX:66905852 chrX:66905851 . 0.987 0 20 hm7G_associated_SNPs_27575 0 0 0 0 1 AR chrX:66905783 3'AG 66905783 Downstream 69bp 25093 chr11 72554312 72554312 1 - G A UCEC 72554311 - 72554291 72554331 41 TACCTACAGTTTCCCACCTCGAACAGCCTCCTGAGCATGCT TACCTACAGTTTCCCACCTTGAACAGCCTCCTGAGCATGCT < 41bp 0.504639087534249 0.717606069585602 NA NA prediction 0.425933964102705 Functional Gain - FCHSD2 ENSG00000137478 CDS Human protein_coding chr11:72554311 chr11:72554312 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27576 0 0 1 0 1 FCHSD2 chr11:72554373 3'AG 72554373 Downstream 62bp 25094 chr1 28208516 28208516 1 + G A COAD 28208517 + 28208497 28208537 41 TCAAGATCCCTTCTACCCTGGAGGTCGACGTGGAGGACGTC TCAAGATCCCTTCTACCCTAGAGGTCGACGTGGAGGACGTC < 41bp 0.50923770977371 0.722204014451988 NA NA prediction 0.425932609356556 Functional Gain - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28208517 chr1:28208516 synonymous SNV . 0 20 hm7G_associated_SNPs_27577 0 0 0 0 1 THEMIS2 chr1:28208482 3'AG 28208482 Downstream 35bp 25095 chr2 219610500 219610500 1 + C T KICH 219610501 + 219610481 219610521 41 TGTCAAGCAGACCATTGGACGGTCCCACTTCAAAATCAGCA TGTCAAGCAGACCATTGGATGGTCCCACTTCAAAATCAGCA < 41bp 0.526172637747538 0.739134188848634 NA NA prediction 0.425923102202194 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219610501 chr2:219610500 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_27578 0 0 1 0 2 TTLL4 chr2:219610414 3'AG 219610414 Downstream 87bp 25096 chr2 219610500 219610500 1 + C T KICH 219610501 + 219610481 219610521 41 TGTCAAGCAGACCATTGGACGGTCCCACTTCAAAATCAGCA TGTCAAGCAGACCATTGGATGGTCCCACTTCAAAATCAGCA < 41bp 0.526172637747538 0.739134188848634 NA NA prediction 0.425923102202194 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219610501 chr2:219610500 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_27578 0 0 1 0 2 TTLL4 chr2:219610524 5'GT 219610524 Upstream 25bp 25097 chr19 3918818 3918818 1 + C T COAD 3918819 + 3918799 3918839 41 CACAGCGCGAGGCCCCAGCCGGAGTTTGTGCTGCCCAGGTC CACAGCGCGAGGCCCCAGCTGGAGTTTGTGCTGCCCAGGTC < 41bp 0.499776885390534 0.712959614488667 NA NA prediction 0.425919228977334 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3918819 chr19:3918818 nonsynonymous SNV 0.032 1 20 hm7G_associated_SNPs_27579 0 0 0 0 2 ATCAY chr19:3918804 3'AG 3918804 Downstream 15bp 25098 chr19 3918818 3918818 1 + C T COAD 3918819 + 3918799 3918839 41 CACAGCGCGAGGCCCCAGCCGGAGTTTGTGCTGCCCAGGTC CACAGCGCGAGGCCCCAGCTGGAGTTTGTGCTGCCCAGGTC < 41bp 0.499776885390534 0.712959614488667 NA NA prediction 0.425919228977334 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3918819 chr19:3918818 nonsynonymous SNV 0.032 1 20 hm7G_associated_SNPs_27579 0 0 0 0 2 ATCAY chr19:3918875 5'GT 3918875 Upstream 58bp 25099 chr12 56493687 56493687 1 + G T PRAD 56493688 + 56493668 56493708 41 TGACAAACAAGAAGCTAGAGGAAGTAGAGCTGGAGCCAGAA TGACAAACAAGAAGCTAGATGAAGTAGAGCTGGAGCCAGAA < 41bp 0.68289159933946 0.895849745370948 NA NA prediction 0.425916292062977 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56493688 chr12:56493687 nonsynonymous SNV 0.059 0 20 hm7G_associated_SNPs_27581 0 0 1 0 1 ERBB3 chr12:56493622 3'AG 56493622 Downstream 66bp 25100 chr12 20799761 20799761 1 + C T BRCA 20799762 + 20799742 20799782 41 ATGTGACAGATGATAAATACGGATGTCTGTCTGGGAATATC ATGTGACAGATGATAAATATGGATGTCTGTCTGGGAATATC < 41bp 0.501767495487997 0.714721546891416 NA NA prediction 0.425908102806837 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20799762 chr12:20799761 synonymous SNV . 0 20 hm7G_associated_SNPs_27585 0 0 1 0 1 PDE3A chr12:20799685 3'AG 20799685 Downstream 77bp 25101 chr15 39879633 39879633 1 + C T GBM 39879634 + 39879614 39879654 41 GCAATGGAATTCAGCAGCGCGGCCGCTCCTGCGATAGCCTC GCAATGGAATTCAGCAGCGTGGCCGCTCCTGCGATAGCCTC < 41bp 0.520914152553581 0.73386786576584 NA NA prediction 0.425907426424519 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39879634 chr15:39879633 synonymous SNV . 0 20 hm7G_associated_SNPs_27586 0 0 1 0 2 THBS1 chr15:39879548 3'AG 39879548 Downstream 86bp 25102 chr15 39879633 39879633 1 + C T GBM 39879634 + 39879614 39879654 41 GCAATGGAATTCAGCAGCGCGGCCGCTCCTGCGATAGCCTC GCAATGGAATTCAGCAGCGTGGCCGCTCCTGCGATAGCCTC < 41bp 0.520914152553581 0.73386786576584 NA NA prediction 0.425907426424519 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39879634 chr15:39879633 synonymous SNV . 0 20 hm7G_associated_SNPs_27586 0 0 1 0 2 THBS1 chr15:39879721 5'GT 39879721 Upstream 89bp 25103 chr12 3129933 3129933 1 + G A rs112668795 3129934 + 3129914 3129954 41 TGGAGCAGCAGCAGGACCCGGACACGGTAGGTCCTGGCCTC TGGAGCAGCAGCAGGACCCAGACACGGTAGGTCCTGGCCTC < 41bp 0.516251256413577 0.729203485303967 NA NA prediction 0.42590445778078 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3129934 chr12:3129933 synonymous SNV . 0 20 hm7G_associated_SNPs_27587 0 0 0 0 1 TEAD4 chr12:3129939 5'GT 3129939 Upstream 7bp 25104 chr5 2755191 2755191 1 + G A rs76652220 2755192 + 2755172 2755212 41 CACGCAAGTTTCAGCGAGCGGGGATTTCCTGCGAGGCCGAG CACGCAAGTTTCAGCGAGCAGGGATTTCCTGCGAGGCCGAG < 41bp 0.537528523499443 0.750465875047989 NA NA prediction 0.425874703097093 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2755192 chr5:2755191 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_27590 0 0 0 0 1 C5orf38 chr5:2755143 3'AG 2755143 Downstream 49bp 25105 chr19 42265212 42265212 1 + G T SKCM 42265213 + 42265193 42265233 41 CCAACCCCGTGGAGGACAAGGATGCTGTGGCCTTCACCTGT CCAACCCCGTGGAGGACAATGATGCTGTGGCCTTCACCTGT < 41bp 0.377366011873415 0.712933181012985 NA NA prediction 0.425866362025971 Functional Gain - CEACAM6 ENSG00000086548 CDS Human other chr19:42265213 chr19:42265212 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_27592 0 0 0 0 1 CEACAM6 chr19:42265157 3'AG 42265157 Downstream 56bp 25106 chrX 155234957 155234957 1 + G T TGCT 155234958 + 155234938 155234978 41 CACAGCAGGCCCAGCACAGGGATCACATTGTCGGGGTGACC CACAGCAGGCCCAGCACAGTGATCACATTGTCGGGGTGACC < 41bp 0.362144529695764 0.712928658900596 NA NA prediction 0.425857317801192 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155234958 chrX:155234957 nonsynonymous SNV 0.016 0 20 hm7G_associated_SNPs_27594 0 0 0 0 1 IL9R chrX:155234943 3'AG 155234943 Downstream 15bp 25107 chr1 26504066 26504066 1 + G A rs193216886 26504067 + 26504047 26504087 41 GGTAGAGACCTGGACCCCCGGAAAGGTGGCAACTTGGCTGA GGTAGAGACCTGGACCCCCAGAAAGGTGGCAACTTGGCTGA < 41bp 0.490703579902328 0.712925999022033 NA NA prediction 0.425851998044067 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26504067 chr1:26504066 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_27595 0 0 1 0 2 CNKSR1 chr1:26504071 5'GT 26504071 Upstream 6bp 25108 chr1 26504066 26504066 1 + G A rs193216886 26504067 + 26504047 26504087 41 GGTAGAGACCTGGACCCCCGGAAAGGTGGCAACTTGGCTGA GGTAGAGACCTGGACCCCCAGAAAGGTGGCAACTTGGCTGA < 41bp 0.490703579902328 0.712925999022033 NA NA prediction 0.425851998044067 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26504067 chr1:26504066 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_27595 0 0 1 0 2 CNKSR1 chr1:26504090 5'GT 26504090 Upstream 25bp 25109 chr12 124102348 124102348 1 + G A UCEC 124102349 + 124102329 124102369 41 CACAGCTCGCATTGGCCACGGGGGCAGCGCTCTGGTGTTCC CACAGCTCGCATTGGCCACAGGGGCAGCGCTCTGGTGTTCC < 41bp 0.511671272309806 0.724591627673883 NA NA prediction 0.425840710728154 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124102349 chr12:124102348 nonsynonymous SNV 0.956 0 20 hm7G_associated_SNPs_27598 0 0 1 0 2 DDX55 chr12:124102305 3'AG 124102305 Downstream 44bp 25110 chr12 124102348 124102348 1 + G A UCEC 124102349 + 124102329 124102369 41 CACAGCTCGCATTGGCCACGGGGGCAGCGCTCTGGTGTTCC CACAGCTCGCATTGGCCACAGGGGCAGCGCTCTGGTGTTCC < 41bp 0.511671272309806 0.724591627673883 NA NA prediction 0.425840710728154 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124102349 chr12:124102348 nonsynonymous SNV 0.956 0 20 hm7G_associated_SNPs_27598 0 0 1 0 2 DDX55 chr12:124102419 5'GT 124102419 Upstream 72bp 25111 chr1 11576126 11576126 1 + C T COAD 11576127 + 11576107 11576147 41 CCTGGAAGACCCACAGCTGCGCATGATCCACACCGTCCAAA CCTGGAAGACCCACAGCTGTGCATGATCCACACCGTCCAAA < 41bp 0.493065722506221 0.7129173809501 NA NA prediction 0.4258347619002 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11576127 chr1:11576126 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_27599 0 0 0 0 2 DISP3 chr1:11576058 3'AG 11576058 Downstream 69bp 25112 chr1 11576126 11576126 1 + C T COAD 11576127 + 11576107 11576147 41 CCTGGAAGACCCACAGCTGCGCATGATCCACACCGTCCAAA CCTGGAAGACCCACAGCTGTGCATGATCCACACCGTCCAAA < 41bp 0.493065722506221 0.7129173809501 NA NA prediction 0.4258347619002 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11576127 chr1:11576126 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_27599 0 0 0 0 2 DISP3 chr1:11576218 5'GT 11576218 Upstream 93bp 25113 chr16 88017833 88017833 1 + C T CESC 88017834 + 88017814 88017854 41 TGGTGGCCGGCTCCCCTCTCGGGGCAACCCAGACGTGCAAC TGGTGGCCGGCTCCCCTCTTGGGGCAACCCAGACGTGCAAC < 41bp 0.519811653717528 0.732723610459955 NA NA prediction 0.425823913484853 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88017834 chr16:88017833 synonymous SNV . 0 20 hm7G_associated_SNPs_27600 0 0 1 0 1 BANP chr16:88017865 5'GT 88017865 Upstream 33bp 25114 chr11 1083836 1083836 1 + G T LUSC 1083837 + 1083817 1083857 41 CTGCCAGACGCTGGCCGCCGGCTATGTGCGTGTTGGGGGCG CTGCCAGACGCTGGCCGCCTGCTATGTGCGTGTTGGGGGCG < 41bp 0.383549204851949 0.712909761219209 NA NA prediction 0.425819522438419 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1083837 chr11:1083836 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27601 0 0 0 0 2 MUC2 chr11:1083741 3'AG 1083741 Downstream 96bp 25115 chr11 1083836 1083836 1 + G T LUSC 1083837 + 1083817 1083857 41 CTGCCAGACGCTGGCCGCCGGCTATGTGCGTGTTGGGGGCG CTGCCAGACGCTGGCCGCCTGCTATGTGCGTGTTGGGGGCG < 41bp 0.383549204851949 0.712909761219209 NA NA prediction 0.425819522438419 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1083837 chr11:1083836 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27601 0 0 0 0 2 MUC2 chr11:1083841 5'GT 1083841 Upstream 6bp 25116 chr21 42813705 42813705 1 + C T COAD 42813706 + 42813686 42813726 41 CAAGGTTGTGGACGTGGTGCGGAACCTCGTGTTCCACCTGA CAAGGTTGTGGACGTGGTGTGGAACCTCGTGTTCCACCTGA < 41bp 0.503424310807985 0.716333868658632 NA NA prediction 0.425819115701294 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42813706 chr21:42813705 nonsynonymous SNV 0.068 3 20 hm7G_associated_SNPs_27602 0 0 0 0 1 MX1 chr21:42813643 3'AG 42813643 Downstream 63bp 25117 chr19 17986799 17986799 1 + G A SKCM 17986800 + 17986780 17986820 41 TCTGGACTGATGTGTTCCAGGTCGTGGTGATGCTAAGTGGC TCTGGACTGATGTGTTCCAAGTCGTGGTGATGCTAAGTGGC < 41bp 0.536313655959053 0.749220130245074 NA NA prediction 0.425812948572042 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17986800 chr19:17986799 synonymous SNV . 0 20 hm7G_associated_SNPs_27604 0 0 0 0 1 SLC5A5 chr19:17986761 3'AG 17986761 Downstream 39bp 25118 chrX 65418861 65418861 1 + C T UCEC 65418862 + 65418842 65418882 41 GGGCTTCCAAGACTCCAATCGGATGCATGGTATGGGGAGTA GGGCTTCCAAGACTCCAATTGGATGCATGGTATGGGGAGTA < 41bp 0.501345711351888 0.71425214477685 NA NA prediction 0.425812866849923 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65418862 chrX:65418861 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_27605 0 0 1 0 1 HEPH chrX:65418870 5'GT 65418870 Upstream 10bp 25119 chr11 70007369 70007369 1 + C T STAD 70007370 + 70007350 70007390 41 CTCCGTGCGGTCCAACATCCGGGTCACAGTCACAGCCACCG CTCCGTGCGGTCCAACATCTGGGTCACAGTCACAGCCACCG < 41bp 0.500355732806994 0.713260187589968 NA NA prediction 0.425808909565948 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007370 chr11:70007369 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27606 0 0 0 1 1 ANO1 chr11:70007468 5'GT 70007468 Upstream 100bp 25120 chr15 91433133 91433133 1 + G A STAD 91433134 + 91433114 91433154 41 TGTTCAGGCGGCAGGAGATGGTTACGCAGCTGCAACAGGAG TGTTCAGGCGGCAGGAGATAGTTACGCAGCTGCAACAGGAG < 41bp 0.548138507784744 0.761041873787794 NA NA prediction 0.425806732006099 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91433134 chr15:91433133 nonsynonymous SNV 0.827 0 20 hm7G_associated_SNPs_27607 0 0 0 0 2 FES chr15:91433070 3'AG 91433070 Downstream 64bp 25121 chr15 91433133 91433133 1 + G A STAD 91433134 + 91433114 91433154 41 TGTTCAGGCGGCAGGAGATGGTTACGCAGCTGCAACAGGAG TGTTCAGGCGGCAGGAGATAGTTACGCAGCTGCAACAGGAG < 41bp 0.548138507784744 0.761041873787794 NA NA prediction 0.425806732006099 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91433134 chr15:91433133 nonsynonymous SNV 0.827 0 20 hm7G_associated_SNPs_27607 0 0 0 0 2 FES chr15:91433192 5'GT 91433192 Upstream 60bp 25122 chr5 167891807 167891807 1 + C T PAAD 167891808 + 167891788 167891828 41 CTGGAGTTAGACCTGCAGGCGACAAGAACCTGGCACAGCCA CTGGAGTTAGACCTGCAGGTGACAAGAACCTGGCACAGCCA < 41bp 0.501708311072514 0.714609707103011 NA NA prediction 0.425802792060994 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167891808 chr5:167891807 nonsynonymous SNV 0.729 3 20 hm7G_associated_SNPs_27608 0 0 0 0 2 WWC1 chr5:167891716 3'AG 167891716 Downstream 92bp 25123 chr5 167891807 167891807 1 + C T PAAD 167891808 + 167891788 167891828 41 CTGGAGTTAGACCTGCAGGCGACAAGAACCTGGCACAGCCA CTGGAGTTAGACCTGCAGGTGACAAGAACCTGGCACAGCCA < 41bp 0.501708311072514 0.714609707103011 NA NA prediction 0.425802792060994 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167891808 chr5:167891807 nonsynonymous SNV 0.729 3 20 hm7G_associated_SNPs_27608 0 0 0 0 2 WWC1 chr5:167891734 3'AG 167891734 Downstream 74bp 25124 chr13 48936995 48936995 1 + C T BLCA 48936996 + 48936976 48937016 41 TTCACCTCGAACACCCAGGCGAGGTCAGAACAGGAGTGCAC TTCACCTCGAACACCCAGGTGAGGTCAGAACAGGAGTGCAC < 41bp 0.503217049905537 0.716113698609046 NA NA prediction 0.425793297407018 Functional Gain - RB1 ENSG00000139687 CDS Human protein_coding chr13:48936996 chr13:48936995 stopgain 0.957 1 20 hm7G_associated_SNPs_27610 3 0 1 0 1 RB1 chr13:48936951 3'AG 48936951 Downstream 45bp 25125 chr5 176022617 176022617 1 + G A SKCM 176022618 + 176022598 176022638 41 ACGGCAGGCAGGCGCAAGTGGACAGCTGGAGGGGCCATCCT ACGGCAGGCAGGCGCAAGTAGACAGCTGGAGGGGCCATCCT < 41bp 0.495514883356121 0.712894151952872 NA NA prediction 0.425788303905743 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176022618 chr5:176022617 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_27611 0 0 1 0 1 CDHR2 chr5:176022533 3'AG 176022533 Downstream 85bp 25126 chr16 70165239 70165239 1 + C T UCEC 70165240 + 70165220 70165260 41 GGTCTGTCCAACGAGGAGCCGGTTAGTATCCCGCTACATGC GGTCTGTCCAACGAGGAGCTGGTTAGTATCCCGCTACATGC < 41bp 0.516892075474919 0.72978444174663 NA NA prediction 0.425784732543422 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70165240 chr16:70165239 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_27613 0 0 0 0 2 PDPR chr16:70165205 3'AG 70165205 Downstream 35bp 25127 chr16 70165239 70165239 1 + C T UCEC 70165240 + 70165220 70165260 41 GGTCTGTCCAACGAGGAGCCGGTTAGTATCCCGCTACATGC GGTCTGTCCAACGAGGAGCTGGTTAGTATCCCGCTACATGC < 41bp 0.516892075474919 0.72978444174663 NA NA prediction 0.425784732543422 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70165240 chr16:70165239 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_27613 0 0 0 0 2 PDPR chr16:70165322 5'GT 70165322 Upstream 84bp 25128 chr19 45781812 45781812 1 + G A LUSC 45781813 + 45781793 45781833 41 GGATCAACATCGGCTATGAGGGTGAGGAGTTGAAGCCATAC GGATCAACATCGGCTATGAAGGTGAGGAGTTGAAGCCATAC < 41bp 0.516184667978212 0.729074132065791 NA NA prediction 0.425778928175158 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45781813 chr19:45781812 synonymous SNV . 0 20 hm7G_associated_SNPs_27614 0 0 1 0 2 MARK4 chr19:45781774 3'AG 45781774 Downstream 39bp 25129 chr19 45781812 45781812 1 + G A LUSC 45781813 + 45781793 45781833 41 GGATCAACATCGGCTATGAGGGTGAGGAGTTGAAGCCATAC GGATCAACATCGGCTATGAAGGTGAGGAGTTGAAGCCATAC < 41bp 0.516184667978212 0.729074132065791 NA NA prediction 0.425778928175158 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45781813 chr19:45781812 synonymous SNV . 0 20 hm7G_associated_SNPs_27614 0 0 1 0 2 MARK4 chr19:45781873 5'GT 45781873 Upstream 62bp 25130 chr14 103573164 103573164 1 + G A rs202144206 103573165 + 103573145 103573185 41 CAGGAACCCAAGAGGAGCTGGAGAAGCCCCTGGTGACGGCC CAGGAACCCAAGAGGAGCTAGAGAAGCCCCTGGTGACGGCC < 41bp 0.539086609717988 0.751974650820547 NA NA prediction 0.425776082205118 Functional Gain - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103573165 chr14:103573164 synonymous SNV . 0 20 hm7G_associated_SNPs_27615 0 0 1 0 2 EXOC3L4 chr14:103573122 3'AG 103573122 Downstream 43bp 25131 chr14 103573164 103573164 1 + G A rs202144206 103573165 + 103573145 103573185 41 CAGGAACCCAAGAGGAGCTGGAGAAGCCCCTGGTGACGGCC CAGGAACCCAAGAGGAGCTAGAGAAGCCCCTGGTGACGGCC < 41bp 0.539086609717988 0.751974650820547 NA NA prediction 0.425776082205118 Functional Gain - EXOC3L4 ENSG00000205436 CDS Human protein_coding chr14:103573165 chr14:103573164 synonymous SNV . 0 20 hm7G_associated_SNPs_27615 0 0 1 0 2 EXOC3L4 chr14:103573236 5'GT 103573236 Upstream 73bp 25132 chr3 186450367 186450367 1 + G T HNSC 186450368 + 186450348 186450388 41 CCACCAACAGCCCAGAGCTGGAGGAGACACTGACTCACACC CCACCAACAGCCCAGAGCTTGAGGAGACACTGACTCACACC < 41bp 0.372976905524903 0.712879575040591 NA NA prediction 0.425759150081181 Functional Gain - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186450368 chr3:186450367 synonymous SNV . 0 20 hm7G_associated_SNPs_27618 0 0 0 0 2 KNG1 chr3:186450291 3'AG 186450291 Downstream 77bp 25133 chr3 186450367 186450367 1 + G T HNSC 186450368 + 186450348 186450388 41 CCACCAACAGCCCAGAGCTGGAGGAGACACTGACTCACACC CCACCAACAGCCCAGAGCTTGAGGAGACACTGACTCACACC < 41bp 0.372976905524903 0.712879575040591 NA NA prediction 0.425759150081181 Functional Gain - KNG1 ENSG00000113889 CDS Human protein_coding chr3:186450368 chr3:186450367 synonymous SNV . 0 20 hm7G_associated_SNPs_27618 0 0 0 0 2 KNG1 chr3:186450463 5'GT 186450463 Upstream 97bp 25134 chr19 36224512 36224512 1 + G T UCEC 36224513 + 36224493 36224533 41 CCCAGGTTTAGCCGTGTGAGGATGAAAACCCCCACAGTGCG CCCAGGTTTAGCCGTGTGATGATGAAAACCCCCACAGTGCG < 41bp 0.370022673156559 0.71287649886006 NA NA prediction 0.42575299772012 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36224513 chr19:36224512 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_27619 0 0 1 0 2 KMT2B chr19:36224498 3'AG 36224498 Downstream 15bp 25135 chr19 36224512 36224512 1 + G T UCEC 36224513 + 36224493 36224533 41 CCCAGGTTTAGCCGTGTGAGGATGAAAACCCCCACAGTGCG CCCAGGTTTAGCCGTGTGATGATGAAAACCCCCACAGTGCG < 41bp 0.370022673156559 0.71287649886006 NA NA prediction 0.42575299772012 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36224513 chr19:36224512 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_27619 0 0 1 0 2 KMT2B chr19:36224587 5'GT 36224587 Upstream 76bp 25136 chr11 65413713 65413713 1 + G A SKCM 65413714 + 65413694 65413734 41 CCTCCGGAAGCGCCACATTGGCAACGACATTGTGACCATCG CCTCCGGAAGCGCCACATTAGCAACGACATTGTGACCATCG < 41bp 0.550339076973432 0.763213959405438 NA NA prediction 0.425749764864012 Functional Gain - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65413714 chr11:65413713 nonsynonymous SNV 0.942 4 20 hm7G_associated_SNPs_27621 0 0 0 0 1 SIPA1 chr11:65413692 3'AG 65413692 Downstream 22bp 25137 chr1 12123623 12123623 1 + G T rs374177592 12123624 + 12123604 12123644 41 CGCTTCCCAGGTGGGCGCCGGCCGCCAGGCCACCTCACGTC CGCTTCCCAGGTGGGCGCCTGCCGCCAGGCCACCTCACGTC < 41bp 0.472259603653476 0.712874288338782 NA NA prediction 0.425748576677564 Functional Gain - TNFRSF8 ENSG00000120949 UTR5 Human protein_coding chr1:12123624 chr1:12123623 . . 0 20 hm7G_associated_SNPs_27623 0 0 1 0 1 TNFRSF8 chr1:12123718 5'GT 12123718 Upstream 96bp 25138 chr11 75438555 75438555 1 + G A BLCA 75438556 + 75438536 75438576 41 CCATGGAGTCCTGGCAGTCGGAGCCTTTGCCAACCTGTGCA CCATGGAGTCCTGGCAGTCAGAGCCTTTGCCAACCTGTGCA < 41bp 0.504447031901173 0.71731912346599 NA NA prediction 0.425744183129633 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75438556 chr11:75438555 nonsynonymous SNV 0.423 4 20 hm7G_associated_SNPs_27625 0 0 1 0 1 MOGAT2 chr11:75438480 3'AG 75438480 Downstream 76bp 25139 chr10 71007179 71007179 1 + G A rs146404017 71007180 + 71007160 71007200 41 TGGGTCTGGAACCGTCTGAGGCTGACTGCATTGCCGTCCAG TGGGTCTGGAACCGTCTGAAGCTGACTGCATTGCCGTCCAG < 41bp 0.524500750618267 0.737370966798095 NA NA prediction 0.425740432359657 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71007180 chr10:71007179 synonymous SNV . 0 20 hm7G_associated_SNPs_27626 0 0 0 0 1 HKDC1 chr10:71007116 3'AG 71007116 Downstream 64bp 25140 chr1 29064179 29064179 1 + G T UCEC 29064180 + 29064160 29064200 41 TCCCCTGCAGAGACCAAAAGGTCAAGGAAACAAAGGTAAGT TCCCCTGCAGAGACCAAAATGTCAAGGAAACAAAGGTAAGT < 41bp 0.573663767423391 0.786531907611678 NA NA prediction 0.425736280376575 Functional Gain - YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29064180 chr1:29064179 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_27627 0 0 1 0 2 YTHDF2 chr1:29064170 3'AG 29064170 Downstream 10bp 25141 chr1 29064179 29064179 1 + G T UCEC 29064180 + 29064160 29064200 41 TCCCCTGCAGAGACCAAAAGGTCAAGGAAACAAAGGTAAGT TCCCCTGCAGAGACCAAAATGTCAAGGAAACAAAGGTAAGT < 41bp 0.573663767423391 0.786531907611678 NA NA prediction 0.425736280376575 Functional Gain - YTHDF2 ENSG00000198492 CDS Human protein_coding chr1:29064180 chr1:29064179 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_27627 0 0 1 0 2 YTHDF2 chr1:29064194 5'GT 29064194 Upstream 16bp 25142 chr17 48432900 48432900 1 + G A COAD 48432901 + 48432881 48432921 41 GCATTCCTATCCAAGAACCGGGACAAGAATTTCCTCAAGTC GCATTCCTATCCAAGAACCAGGACAAGAATTTCCTCAAGTC < 41bp 0.504605414128933 0.717459761912827 NA NA prediction 0.425708695567787 Functional Gain - XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48432901 chr17:48432900 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_27632 0 0 1 0 2 XYLT2 chr17:48432862 3'AG 48432862 Downstream 39bp 25143 chr17 48432900 48432900 1 + G A COAD 48432901 + 48432881 48432921 41 GCATTCCTATCCAAGAACCGGGACAAGAATTTCCTCAAGTC GCATTCCTATCCAAGAACCAGGACAAGAATTTCCTCAAGTC < 41bp 0.504605414128933 0.717459761912827 NA NA prediction 0.425708695567787 Functional Gain - XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48432901 chr17:48432900 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_27632 0 0 1 0 2 XYLT2 chr17:48432942 5'GT 48432942 Upstream 43bp 25144 chr8 22475940 22475940 1 + G A SKCM 22475941 + 22475921 22475961 41 CTTTGATGCCAACTGGTGTGGCTACTTGCACCGGCGAGACT CTTTGATGCCAACTGGTGTAGCTACTTGCACCGGCGAGACT < 41bp 0.504603346045059 0.717456270356054 NA NA prediction 0.425705848621991 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475941 chr8:22475940 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27633 0 0 1 0 2 CCAR2 chr8:22475862 3'AG 22475862 Downstream 79bp 25145 chr8 22475940 22475940 1 + G A SKCM 22475941 + 22475921 22475961 41 CTTTGATGCCAACTGGTGTGGCTACTTGCACCGGCGAGACT CTTTGATGCCAACTGGTGTAGCTACTTGCACCGGCGAGACT < 41bp 0.504603346045059 0.717456270356054 NA NA prediction 0.425705848621991 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475941 chr8:22475940 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27633 0 0 1 0 2 CCAR2 chr8:22476008 5'GT 22476008 Upstream 69bp 25146 chr1 35851752 35851752 1 + C T GBM 35851753 + 35851733 35851773 41 CATGTCAGATGGAAGTATACGCAACTTCTGCAGCTACAGCT CATGTCAGATGGAAGTATATGCAACTTCTGCAGCTACAGCT < 41bp 0.521110570390317 0.733957041109557 NA NA prediction 0.425692941438481 Functional Gain - ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35851753 chr1:35851752 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_27635 0 0 1 0 2 ZMYM4 chr1:35851675 3'AG 35851675 Downstream 78bp 25147 chr1 35851752 35851752 1 + C T GBM 35851753 + 35851733 35851773 41 CATGTCAGATGGAAGTATACGCAACTTCTGCAGCTACAGCT CATGTCAGATGGAAGTATATGCAACTTCTGCAGCTACAGCT < 41bp 0.521110570390317 0.733957041109557 NA NA prediction 0.425692941438481 Functional Gain - ZMYM4 ENSG00000146463 CDS Human protein_coding chr1:35851753 chr1:35851752 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_27635 0 0 1 0 2 ZMYM4 chr1:35851790 5'GT 35851790 Upstream 39bp 25148 chr1 226026434 226026434 1 + C T OV 226026435 + 226026415 226026455 41 AGCCCTTGCTGATGGTGCACGGCTGGCCCGGCTCTTTCTAC AGCCCTTGCTGATGGTGCATGGCTGGCCCGGCTCTTTCTAC < 41bp 0.506087281397439 0.718929949799678 NA NA prediction 0.425685336804477 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226026435 chr1:226026434 synonymous SNV . 0 20 hm7G_associated_SNPs_27637 0 0 1 0 1 EPHX1 chr1:226026355 3'AG 226026355 Downstream 80bp 25149 chr1 23235576 23235576 1 + C T COAD 23235577 + 23235557 23235597 41 CAGTACCGGAAGTTCACCTCGGCCAGTGATGTGTGGAGCTA CAGTACCGGAAGTTCACCTTGGCCAGTGATGTGTGGAGCTA < 41bp 0.515148078530431 0.727982075876783 NA NA prediction 0.425667994692705 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23235577 chr1:23235576 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_27640 0 0 0 0 2 EPHB2 chr1:23235515 3'AG 23235515 Downstream 62bp 25150 chr1 23235576 23235576 1 + C T COAD 23235577 + 23235557 23235597 41 CAGTACCGGAAGTTCACCTCGGCCAGTGATGTGTGGAGCTA CAGTACCGGAAGTTCACCTTGGCCAGTGATGTGTGGAGCTA < 41bp 0.515148078530431 0.727982075876783 NA NA prediction 0.425667994692705 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23235577 chr1:23235576 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_27640 0 0 0 0 2 EPHB2 chr1:23235664 5'GT 23235664 Upstream 89bp 25151 chrX 152818543 152818543 1 + G A COAD 152818544 + 152818524 152818564 41 CTCCGGGGCTTTCGGCCTCGGGACCGGGACGACATGGTGAG CTCCGGGGCTTTCGGCCTCAGGACCGGGACGACATGGTGAG < 41bp 0.487604235834953 0.712828180296494 NA NA prediction 0.425656360592988 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152818544 chrX:152818543 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_27641 0 0 0 0 1 ATP2B3 chrX:152818493 3'AG 152818493 Downstream 51bp 25152 chr12 51279109 51279109 1 + G T PAAD 51279110 + 51279090 51279130 41 TTCTGAGAGGAGTTATGGGGGAATAATTCCTAACACTTCAT TTCTGAGAGGAGTTATGGGTGAATAATTCCTAACACTTCAT < 41bp 0.40442092169101 0.71282813557849 NA NA prediction 0.42565627115698 Functional Gain - TMPRSS12 ENSG00000186452 CDS Human protein_coding chr12:51279110 chr12:51279109 stopgain 0.009 0 20 hm7G_associated_SNPs_27642 0 0 0 0 1 TMPRSS12 chr12:51279029 3'AG 51279029 Downstream 81bp 25153 chr4 15516398 15516398 1 + C T UCEC 15516399 + 15516379 15516419 41 GCTTAGATCACGTGGCTGACGATTTTGTAGCAGTCAGACCT GCTTAGATCACGTGGCTGATGATTTTGTAGCAGTCAGACCT < 41bp 0.512655497589018 0.725482481779809 NA NA prediction 0.425653968381582 Functional Gain - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15516399 chr4:15516398 synonymous SNV . 0 20 hm7G_associated_SNPs_27643 0 0 0 0 2 CC2D2A chr4:15516330 3'AG 15516330 Downstream 69bp 25154 chr4 15516398 15516398 1 + C T UCEC 15516399 + 15516379 15516419 41 GCTTAGATCACGTGGCTGACGATTTTGTAGCAGTCAGACCT GCTTAGATCACGTGGCTGATGATTTTGTAGCAGTCAGACCT < 41bp 0.512655497589018 0.725482481779809 NA NA prediction 0.425653968381582 Functional Gain - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15516399 chr4:15516398 synonymous SNV . 0 20 hm7G_associated_SNPs_27643 0 0 0 0 2 CC2D2A chr4:15516492 5'GT 15516492 Upstream 95bp 25155 chr17 59543182 59543182 1 + G A SARC 59543183 + 59543163 59543203 41 CCCCTCGGCTCCCCCAGGAGGATGTTCCCCAGCTACAAGGT CCCCTCGGCTCCCCCAGGAAGATGTTCCCCAGCTACAAGGT < 41bp 0.511398522223811 0.724222659574898 NA NA prediction 0.425648274702173 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59543183 chr17:59543182 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_27645 0 0 0 0 1 TBX4 chr17:59543180 3'AG 59543180 Downstream 3bp 25156 chr18 2909723 2909723 1 + G A UCEC 2909724 + 2909704 2909744 41 CTCTGGTGTCTTTTTCTGCGGGGCTCACCCAGAAGCCTTTC CTCTGGTGTCTTTTTCTGCAGGGCTCACCCAGAAGCCTTTC < 41bp 0.513588509359211 0.726408844613403 NA NA prediction 0.425640670508384 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2909724 chr18:2909723 synonymous SNV . 0 20 hm7G_associated_SNPs_27647 0 0 1 0 2 EMILIN2 chr18:2909689 3'AG 2909689 Downstream 35bp 25157 chr18 2909723 2909723 1 + G A UCEC 2909724 + 2909704 2909744 41 CTCTGGTGTCTTTTTCTGCGGGGCTCACCCAGAAGCCTTTC CTCTGGTGTCTTTTTCTGCAGGGCTCACCCAGAAGCCTTTC < 41bp 0.513588509359211 0.726408844613403 NA NA prediction 0.425640670508384 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2909724 chr18:2909723 synonymous SNV . 0 20 hm7G_associated_SNPs_27647 0 0 1 0 2 EMILIN2 chr18:2909817 5'GT 2909817 Upstream 95bp 25158 chr11 67787208 67787208 1 + G A HNSC 67787209 + 67787189 67787229 41 CTTTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGC CTTTGCTGTGGTGCTGGGCAGGCCCCAGGAGACGGGGCAGC < 41bp 0.500509413564272 0.713327377617492 NA NA prediction 0.425635928106439 Functional Gain - ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787209 chr11:67787208 nonsynonymous SNV 0.784 2 20 hm7G_associated_SNPs_27648 0 0 0 0 2 ALDH3B1 chr11:67787184 3'AG 67787184 Downstream 25bp 25159 chr11 67787208 67787208 1 + G A HNSC 67787209 + 67787189 67787229 41 CTTTGCTGTGGTGCTGGGCGGGCCCCAGGAGACGGGGCAGC CTTTGCTGTGGTGCTGGGCAGGCCCCAGGAGACGGGGCAGC < 41bp 0.500509413564272 0.713327377617492 NA NA prediction 0.425635928106439 Functional Gain - ALDH3B1 ENSG00000006534 CDS Human protein_coding chr11:67787209 chr11:67787208 nonsynonymous SNV 0.784 2 20 hm7G_associated_SNPs_27648 0 0 0 0 2 ALDH3B1 chr11:67787265 5'GT 67787265 Upstream 58bp 25160 chr7 97820153 97820153 1 + C T CESC 97820154 + 97820134 97820174 41 GAGAGAGACACAAAACTCCCGAAGCCCCAGCTGGAGCAGCC GAGAGAGACACAAAACTCCTGAAGCCCCAGCTGGAGCAGCC < 41bp 0.494727780742374 0.712813474497729 NA NA prediction 0.425626948995459 Functional Gain - LMTK2 ENSG00000164715 CDS Human protein_coding chr7:97820154 chr7:97820153 nonsynonymous SNV 0.829 1 20 hm7G_associated_SNPs_27649 0 0 1 0 1 LMTK2 chr7:97820189 5'GT 97820189 Upstream 37bp 25161 chr1 9778802 9778802 1 + G A LUSC 9778803 + 9778783 9778823 41 ACGAGATGCTGTGCAAGACGGTGTCCAGCTCGGAGGTGAGC ACGAGATGCTGTGCAAGACAGTGTCCAGCTCGGAGGTGAGC < 41bp 0.509851192507235 0.722659785998915 NA NA prediction 0.42561718698336 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9778803 chr1:9778802 synonymous SNV . 0 20 hm7G_associated_SNPs_27650 0 0 0 0 1 PIK3CD chr1:9778752 3'AG 9778752 Downstream 51bp 25162 chr17 42390486 42390486 1 + G A LGG 42390487 + 42390467 42390507 41 CTCAGCCTGTGCCCCAGCAGGTCCAGTGAGCTGGTTCAGCT CTCAGCCTGTGCCCCAGCAAGTCCAGTGAGCTGGTTCAGCT < 41bp 0.491159042093856 0.712804663955551 NA NA prediction 0.425609327911101 Functional Gain - RUNDC3A;RUNDC3A ENSG00000108309;ENSG00000108309 exonic;splicing Human protein_coding chr17:42390487 chr17:42390486 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27651 0 0 0 0 1 RUNDC3A chr17:42390472 3'AG 42390472 Downstream 15bp 25163 chr19 8495653 8495653 1 + G A COAD 8495654 + 8495634 8495674 41 AGGCTGGTTGTGCCTGCGCGGGGCCCAGGACCACCTCCGGC AGGCTGGTTGTGCCTGCGCAGGGCCCAGGACCACCTCCGGC < 41bp 0.526582980799254 0.739380118398493 NA NA prediction 0.425594275198478 Functional Gain - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8495654 chr19:8495653 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_27652 0 0 0 0 1 MARCH2 chr19:8495751 5'GT 8495751 Upstream 99bp 25164 chr3 184106703 184106703 1 + G A ESCA 184106704 + 184106684 184106724 41 GGGGTGCCTCACTGTGAGCGGGATGACTGTTCACTGCCACT GGGGTGCCTCACTGTGAGCAGGATGACTGTTCACTGCCACT < 41bp 0.494140791532144 0.712794059985699 NA NA prediction 0.425588119971399 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184106704 chr3:184106703 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27653 0 0 1 0 2 CHRD chr3:184106681 3'AG 184106681 Downstream 23bp 25165 chr3 184106703 184106703 1 + G A ESCA 184106704 + 184106684 184106724 41 GGGGTGCCTCACTGTGAGCGGGATGACTGTTCACTGCCACT GGGGTGCCTCACTGTGAGCAGGATGACTGTTCACTGCCACT < 41bp 0.494140791532144 0.712794059985699 NA NA prediction 0.425588119971399 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184106704 chr3:184106703 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27653 0 0 1 0 2 CHRD chr3:184106783 5'GT 184106783 Upstream 81bp 25166 chr11 124496452 124496452 1 + C T COAD 124496453 + 124496433 124496473 41 TGCCCTGGATCCCTCAGGACGGCCTGTGTTCCCCATCGGAC TGCCCTGGATCCCTCAGGATGGCCTGTGTTCCCCATCGGAC < 41bp 0.503926004730017 0.716718131717712 NA NA prediction 0.42558425397539 Functional Gain - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124496453 chr11:124496452 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27655 0 0 1 0 2 TBRG1 chr11:124496369 3'AG 124496369 Downstream 84bp 25167 chr11 124496452 124496452 1 + C T COAD 124496453 + 124496433 124496473 41 TGCCCTGGATCCCTCAGGACGGCCTGTGTTCCCCATCGGAC TGCCCTGGATCCCTCAGGATGGCCTGTGTTCCCCATCGGAC < 41bp 0.503926004730017 0.716718131717712 NA NA prediction 0.42558425397539 Functional Gain - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124496453 chr11:124496452 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27655 0 0 1 0 2 TBRG1 chr11:124496505 5'GT 124496505 Upstream 54bp 25168 chr19 54406348 54406348 1 + G A SKCM 54406349 + 54406329 54406369 41 CATTGCCTACCAGCCCTATGGGAAGTCTGTCGATTGGTGGT CATTGCCTACCAGCCCTATAGGAAGTCTGTCGATTGGTGGT < 41bp 0.526153729081971 0.738944693475996 NA NA prediction 0.42558192878805 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54406349 chr19:54406348 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_27656 0 0 1 0 2 PRKCG chr19:54406327 3'AG 54406327 Downstream 22bp 25169 chr19 54406348 54406348 1 + G A SKCM 54406349 + 54406329 54406369 41 CATTGCCTACCAGCCCTATGGGAAGTCTGTCGATTGGTGGT CATTGCCTACCAGCCCTATAGGAAGTCTGTCGATTGGTGGT < 41bp 0.526153729081971 0.738944693475996 NA NA prediction 0.42558192878805 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54406349 chr19:54406348 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_27656 0 0 1 0 2 PRKCG chr19:54406407 5'GT 54406407 Upstream 60bp 25170 chr8 67047300 67047300 1 + C T LUSC 67047301 + 67047281 67047321 41 ACATCTACTGTCTGAACTGCGAAGTACCCACCTGCTCTCTG ACATCTACTGTCTGAACTGTGAAGTACCCACCTGCTCTCTG < 41bp 0.50143201658908 0.714222978410568 NA NA prediction 0.425581923642976 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67047301 chr8:67047300 synonymous SNV . 0 20 hm7G_associated_SNPs_27657 0 0 0 0 2 TRIM55 chr8:67047225 3'AG 67047225 Downstream 76bp 25171 chr8 67047300 67047300 1 + C T LUSC 67047301 + 67047281 67047321 41 ACATCTACTGTCTGAACTGCGAAGTACCCACCTGCTCTCTG ACATCTACTGTCTGAACTGTGAAGTACCCACCTGCTCTCTG < 41bp 0.50143201658908 0.714222978410568 NA NA prediction 0.425581923642976 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67047301 chr8:67047300 synonymous SNV . 0 20 hm7G_associated_SNPs_27657 0 0 0 0 2 TRIM55 chr8:67047390 5'GT 67047390 Upstream 91bp 25172 chr10 43609994 43609994 1 + C T UCEC 43609995 + 43609975 43610015 41 CTCTTCTCCTTCATCGTCTCGGTGCTGCTGTCTGCCTTCTG CTCTTCTCCTTCATCGTCTTGGTGCTGCTGTCTGCCTTCTG < 41bp 0.503415069260966 0.716203731101298 NA NA prediction 0.425577323680665 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43609995 chr10:43609994 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_27659 6 0 0 0 1 RET chr10:43609928 3'AG 43609928 Downstream 67bp 25173 chr2 206580956 206580956 1 + C T UCEC 206580957 + 206580937 206580977 41 GGGATGGGGACAGTGAATCCGCAGACCTCCTGGGCAAACAC GGGATGGGGACAGTGAATCTGCAGACCTCCTGGGCAAACAC < 41bp 0.524237829184572 0.737024991205716 NA NA prediction 0.425574324042288 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206580957 chr2:206580956 synonymous SNV . 0 20 hm7G_associated_SNPs_27660 0 0 0 0 1 NRP2 chr2:206580917 3'AG 206580917 Downstream 40bp 25174 chr20 2291673 2291673 1 + G A SKCM 2291674 + 2291654 2291694 41 TAGTGGATAGCGTCTTTATGGGTAACCACGCTGAGAGAGAA TAGTGGATAGCGTCTTTATAGGTAACCACGCTGAGAGAGAA < 41bp 0.501230652560226 0.714017407536732 NA NA prediction 0.425573509953013 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2291674 chr20:2291673 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_27661 0 0 0 0 1 TGM3 chr20:2291657 3'AG 2291657 Downstream 17bp 25175 chr15 40864011 40864011 1 + G A SKCM 40864012 + 40863992 40864032 41 GAGCTACACCCCTTGCATCGGCTTGACCGCCTTACCTCAGG GAGCTACACCCCTTGCATCAGCTTGACCGCCTTACCTCAGG < 41bp 0.495887755727921 0.712785371956027 NA NA prediction 0.425570743912053 Functional Gain - RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40864012 chr15:40864011 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27664 0 0 0 0 1 RPUSD2 chr15:40864099 5'GT 40864099 Upstream 89bp 25176 chr10 45467223 45467223 1 + C T COAD 45467224 + 45467204 45467244 41 TGTCTTTCCCTTTTTAGGTCGGAGCTCTTAGGCCTGCTGAA TGTCTTTCCCTTTTTAGGTTGGAGCTCTTAGGCCTGCTGAA < 41bp 0.515534661244629 0.728310122459477 NA NA prediction 0.425550922429697 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45467224 chr10:45467223 nonsynonymous SNV 0.925 3 20 hm7G_associated_SNPs_27665 0 0 1 0 2 RASSF4 chr10:45467221 3'AG 45467221 Downstream 3bp 25177 chr10 45467223 45467223 1 + C T COAD 45467224 + 45467204 45467244 41 TGTCTTTCCCTTTTTAGGTCGGAGCTCTTAGGCCTGCTGAA TGTCTTTCCCTTTTTAGGTTGGAGCTCTTAGGCCTGCTGAA < 41bp 0.515534661244629 0.728310122459477 NA NA prediction 0.425550922429697 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45467224 chr10:45467223 nonsynonymous SNV 0.925 3 20 hm7G_associated_SNPs_27665 0 0 1 0 2 RASSF4 chr10:45467296 5'GT 45467296 Upstream 74bp 25178 chr20 30602817 30602817 1 + C T HNSC 30602818 + 30602798 30602838 41 CGATGCCCCTTTATCCCCCCGACTACCTCATCGACCCCCAG CGATGCCCCTTTATCCCCCTGACTACCTCATCGACCCCCAG < 41bp 0.500691486580521 0.713465388427911 NA NA prediction 0.42554780369478 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30602818 chr20:30602817 synonymous SNV . 0 20 hm7G_associated_SNPs_27666 0 0 0 0 1 CCM2L chr20:30602874 5'GT 30602874 Upstream 58bp 25179 chr3 11058872 11058872 1 + G T THCA 11058873 + 11058853 11058893 41 ATCGCACGTCCATCTGCCAGGACCCCTGCGTCCAAATTCCG ATCGCACGTCCATCTGCCATGACCCCTGCGTCCAAATTCCG < 41bp 0.557076508998965 0.769849909821086 NA NA prediction 0.425546801644242 Functional Gain - SLC6A1-AS1 ENSG00000232287 ncRNA_intronic Human protein_coding chr3:11058873 chr3:11058872 . . 0 20 hm7G_associated_SNPs_27667 0 0 0 0 1 SLC6A1 chr3:11058945 5'GT 11058945 Upstream 74bp 25180 chr12 133272573 133272573 1 + C T COAD 133272574 + 133272554 133272594 41 CAGGAGGCTTCTCCTGGACCGCCTCGTCTTTGCACCGGCCT CAGGAGGCTTCTCCTGGACTGCCTCGTCTTTGCACCGGCCT < 41bp 0.501358168084348 0.714129748871831 NA NA prediction 0.425543161574965 Functional Gain - PXMP2 ENSG00000176894 CDS Human protein_coding chr12:133272574 chr12:133272573 nonsynonymous SNV 0.953 5 20 hm7G_associated_SNPs_27668 0 0 0 0 1 PXMP2 chr12:133272632 5'GT 133272632 Upstream 60bp 25181 chr10 73046530 73046530 1 + C T OV 73046531 + 73046511 73046551 41 CGACCACAACCTCATCATCCGCCAGGCCCGCCTGTCGGACA CGACCACAACCTCATCATCTGCCAGGCCCGCCTGTCGGACA < 41bp 0.495210537593318 0.712768569920139 NA NA prediction 0.425537139840278 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73046531 chr10:73046530 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27669 0 0 0 0 2 UNC5B chr10:73046446 3'AG 73046446 Downstream 85bp 25182 chr10 73046530 73046530 1 + C T OV 73046531 + 73046511 73046551 41 CGACCACAACCTCATCATCCGCCAGGCCCGCCTGTCGGACA CGACCACAACCTCATCATCTGCCAGGCCCGCCTGTCGGACA < 41bp 0.495210537593318 0.712768569920139 NA NA prediction 0.425537139840278 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73046531 chr10:73046530 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27669 0 0 0 0 2 UNC5B chr10:73046626 5'GT 73046626 Upstream 97bp 25183 chr16 31230652 31230652 1 + G T LUAD 31230653 + 31230633 31230673 41 GGCCGTGGGGGAGCAGCTGGGCAAGATGCGGGTGTTCCTGG GGCCGTGGGGGAGCAGCTGTGCAAGATGCGGGTGTTCCTGG < 41bp 0.697298495810717 0.910058746146367 NA NA prediction 0.4255205006713 Functional Gain - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230653 chr16:31230652 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_27673 0 0 1 0 1 TRIM72 chr16:31230610 3'AG 31230610 Downstream 43bp 25184 chr7 128494727 128494727 1 + G A rs527248119 128494728 + 128494708 128494748 41 GCTGGAGCGAGGTGTGGCCGGCGTGCCAGGTAAGGGGCAGG GCTGGAGCGAGGTGTGGCCAGCGTGCCAGGTAAGGGGCAGG < 41bp 0.502864311969167 0.715622260833873 NA NA prediction 0.425515897729412 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128494728 chr7:128494727 nonsynonymous SNV 0.877 4 20 hm7G_associated_SNPs_27674 0 0 1 0 1 FLNC chr7:128494736 5'GT 128494736 Upstream 10bp 25185 chr20 368896 368896 1 + G A READ 368897 + 368877 368917 41 GAGCCCGAGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTG GAGCCCGAGGAGGGCGGGCAGGCCTACCAGGCCCTGCACTG < 41bp 0.483000702769574 0.712755815030123 NA NA prediction 0.425511630060246 Functional Gain - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:368897 chr20:368896 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_27675 0 0 1 0 1 TRIB3 chr20:368945 5'GT 368945 Upstream 50bp 25186 chr10 135010589 135010589 1 + G T SKCM 135010590 + 135010570 135010610 41 CAGCTACCTCCTCCAGCGAGGCATGGACAGCCGGAAAATCC CAGCTACCTCCTCCAGCGATGCATGGACAGCCGGAAAATCC < 41bp 0.353128244691041 0.712753992274394 NA NA prediction 0.425507984548787 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135010590 chr10:135010589 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_27676 0 0 0 0 1 KNDC1 chr10:135010639 5'GT 135010639 Upstream 51bp 25187 chr11 119059739 119059739 1 + G A LGG 119059740 + 119059720 119059760 41 CCAGGAGGCTCAGCTGCCCGGGCTGGGCTGCAAGTGGGAGA CCAGGAGGCTCAGCTGCCCAGGCTGGGCTGCAAGTGGGAGA < 41bp 0.561306566908713 0.774055766198406 NA NA prediction 0.425498398579387 Functional Gain - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119059740 chr11:119059739 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_27678 0 0 0 0 1 PDZD3 chr11:119059714 3'AG 119059714 Downstream 26bp 25188 chr6 50791168 50791168 1 + G A LUAD 50791169 + 50791149 50791189 41 CTCGCGGCTCTCCCAGCTGGGCTCGGTGTCCCAAGGACCCT CTCGCGGCTCTCCCAGCTGAGCTCGGTGTCCCAAGGACCCT < 41bp 0.493165208235056 0.712747225590679 NA NA prediction 0.425494451181358 Functional Gain - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50791169 chr6:50791168 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_27680 0 0 0 0 1 TFAP2B chr6:50791120 3'AG 50791120 Downstream 49bp 25189 chr3 197703553 197703553 1 + C T BLCA 197703554 + 197703534 197703574 41 GTGCCGCACACACAAAGTGCGGCCCCGTTATTGTTCCTGAG GTGCCGCACACACAAAGTGTGGCCCCGTTATTGTTCCTGAG < 41bp 0.509819709422939 0.722566058585159 NA NA prediction 0.425492698324441 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197703554 chr3:197703553 synonymous SNV . 0 20 hm7G_associated_SNPs_27681 0 0 0 0 2 LMLN chr3:197703469 3'AG 197703469 Downstream 85bp 25190 chr3 197703553 197703553 1 + C T BLCA 197703554 + 197703534 197703574 41 GTGCCGCACACACAAAGTGCGGCCCCGTTATTGTTCCTGAG GTGCCGCACACACAAAGTGTGGCCCCGTTATTGTTCCTGAG < 41bp 0.509819709422939 0.722566058585159 NA NA prediction 0.425492698324441 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197703554 chr3:197703553 synonymous SNV . 0 20 hm7G_associated_SNPs_27681 0 0 0 0 2 LMLN chr3:197703586 5'GT 197703586 Upstream 34bp 25191 chr7 149419603 149419603 1 + G A SKCM 149419604 + 149419584 149419624 41 ACCCATAGCCCCAGCAGGAGGAAGAGCCACAGAGGACAGGA ACCCATAGCCCCAGCAGGAAGAAGAGCCACAGAGGACAGGA < 41bp 0.542471565015121 0.755217435764502 NA NA prediction 0.425491741498762 Functional Gain - KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149419604 chr7:149419603 nonsynonymous SNV 0.048 0 20 hm7G_associated_SNPs_27683 0 0 0 0 2 KRBA1 chr7:149419513 3'AG 149419513 Downstream 91bp 25192 chr7 149419603 149419603 1 + G A SKCM 149419604 + 149419584 149419624 41 ACCCATAGCCCCAGCAGGAGGAAGAGCCACAGAGGACAGGA ACCCATAGCCCCAGCAGGAAGAAGAGCCACAGAGGACAGGA < 41bp 0.542471565015121 0.755217435764502 NA NA prediction 0.425491741498762 Functional Gain - KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149419604 chr7:149419603 nonsynonymous SNV 0.048 0 20 hm7G_associated_SNPs_27683 0 0 0 0 2 KRBA1 chr7:149419644 5'GT 149419644 Upstream 42bp 25193 chr19 34984440 34984440 1 + G A KICH 34984441 + 34984421 34984461 41 TACCACCCAGGCTGCTTCCGGTGCTCCGTGTGCAATGAGTG TACCACCCAGGCTGCTTCCAGTGCTCCGTGTGCAATGAGTG < 41bp 0.504741829778132 0.717486224195905 NA NA prediction 0.425488788835546 Functional Gain - WTIP ENSG00000142279 CDS Human protein_coding chr19:34984441 chr19:34984440 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_27684 0 0 0 0 2 WTIP chr19:34984397 3'AG 34984397 Downstream 44bp 25194 chr19 34984440 34984440 1 + G A KICH 34984441 + 34984421 34984461 41 TACCACCCAGGCTGCTTCCGGTGCTCCGTGTGCAATGAGTG TACCACCCAGGCTGCTTCCAGTGCTCCGTGTGCAATGAGTG < 41bp 0.504741829778132 0.717486224195905 NA NA prediction 0.425488788835546 Functional Gain - WTIP ENSG00000142279 CDS Human protein_coding chr19:34984441 chr19:34984440 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_27684 0 0 0 0 2 WTIP chr19:34984527 5'GT 34984527 Upstream 88bp 25195 chr19 38983214 38983214 1 + G T LUAD 38983215 + 38983195 38983235 41 AGCCTGTTGGAGAAAGTGCGGCTGGTGAAGAAGAAGGAAGA AGCCTGTTGGAGAAAGTGCTGCTGGTGAAGAAGAAGGAAGA < 41bp 0.420782710706532 0.712739839193904 NA NA prediction 0.425479678387809 Functional Gain - RYR1 ENSG00000196218 CDS Human protein_coding chr19:38983215 chr19:38983214 nonsynonymous SNV 0.954 0 20 hm7G_associated_SNPs_27685 0 0 1 0 2 RYR1 chr19:38983130 3'AG 38983130 Downstream 85bp 25196 chr19 38983214 38983214 1 + G T LUAD 38983215 + 38983195 38983235 41 AGCCTGTTGGAGAAAGTGCGGCTGGTGAAGAAGAAGGAAGA AGCCTGTTGGAGAAAGTGCTGCTGGTGAAGAAGAAGGAAGA < 41bp 0.420782710706532 0.712739839193904 NA NA prediction 0.425479678387809 Functional Gain - RYR1 ENSG00000196218 CDS Human protein_coding chr19:38983215 chr19:38983214 nonsynonymous SNV 0.954 0 20 hm7G_associated_SNPs_27685 0 0 1 0 2 RYR1 chr19:38983276 5'GT 38983276 Upstream 63bp 25197 chr2 3743355 3743355 1 + G T OV 3743356 + 3743336 3743376 41 GGTACTGGACAAAAAGACTGGACTGCAACTGACCCCAAAGA GGTACTGGACAAAAAGACTTGACTGCAACTGACCCCAAAGA < 41bp 0.547720059898223 0.760456737501354 NA NA prediction 0.425473355206262 Functional Gain - ALLC ENSG00000151360 CDS Human protein_coding chr2:3743356 chr2:3743355 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_27686 0 0 0 0 1 ALLC chr2:3743307 3'AG 3743307 Downstream 49bp 25198 chr1 6692465 6692465 1 + G A UCS 6692466 + 6692446 6692486 41 CCCAGGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCT CCCAGGTCCTCCCTGAGGCAGGGGCCGGAGAGGACAGTCCT < 41bp 0.520278154136209 0.733014592416509 NA NA prediction 0.425472876560601 Functional Gain - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692466 chr1:6692465 synonymous SNV . 0 20 hm7G_associated_SNPs_27687 0 0 1 0 3 THAP3 chr1:6692430 3'AG 6692430 Downstream 36bp 25199 chr1 6692465 6692465 1 + G A UCS 6692466 + 6692446 6692486 41 CCCAGGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCT CCCAGGTCCTCCCTGAGGCAGGGGCCGGAGAGGACAGTCCT < 41bp 0.520278154136209 0.733014592416509 NA NA prediction 0.425472876560601 Functional Gain - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692466 chr1:6692465 synonymous SNV . 0 20 hm7G_associated_SNPs_27687 0 0 1 0 3 THAP3 chr1:6692451 3'AG 6692451 Downstream 15bp 25200 chr1 6692465 6692465 1 + G A UCS 6692466 + 6692446 6692486 41 CCCAGGTCCTCCCTGAGGCGGGGGCCGGAGAGGACAGTCCT CCCAGGTCCTCCCTGAGGCAGGGGCCGGAGAGGACAGTCCT < 41bp 0.520278154136209 0.733014592416509 NA NA prediction 0.425472876560601 Functional Gain - THAP3 ENSG00000041988 CDS Human protein_coding chr1:6692466 chr1:6692465 synonymous SNV . 0 20 hm7G_associated_SNPs_27687 0 0 1 0 3 THAP3 chr1:6692555 5'GT 6692555 Upstream 91bp 25201 chr19 34810821 34810821 1 + C T UCEC 34810822 + 34810802 34810842 41 GTTTTCACAGGTGTTGGGGCGATGTTTCCTGACTGTGGTGC GTTTTCACAGGTGTTGGGGTGATGTTTCCTGACTGTGGTGC < 41bp 0.513764621265734 0.726498040298436 NA NA prediction 0.425466838065403 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34810822 chr19:34810821 stopgain 1.000 1 20 hm7G_associated_SNPs_27688 0 0 1 0 1 KIAA0355 chr19:34810812 3'AG 34810812 Downstream 10bp 25202 chr17 7359937 7359937 1 + G T UCEC 7359938 + 7359918 7359958 41 AGTTTGTGGCCATGGTAGTGGACCGCCTCTTCCTGTGGACT AGTTTGTGGCCATGGTAGTTGACCGCCTCTTCCTGTGGACT < 41bp 0.381583825712149 0.712726593825954 NA NA prediction 0.425453187651908 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7359938 chr17:7359937 synonymous SNV . 0 20 hm7G_associated_SNPs_27692 0 0 0 0 1 CHRNB1 chr17:7359902 3'AG 7359902 Downstream 36bp 25203 chr13 28841002 28841002 1 + G T SARC 28841003 + 28840983 28841023 41 GATCTGCCATATTGCCTTCGGAGGATACATGGTAAGGAAGA GATCTGCCATATTGCCTTCTGAGGATACATGGTAAGGAAGA < 41bp 0.390446462350629 0.712719388185832 NA NA prediction 0.425438776371664 Functional Gain - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28841003 chr13:28841002 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27693 0 0 1 0 1 PAN3 chr13:28841013 5'GT 28841013 Upstream 12bp 25204 chr19 4159709 4159709 1 + C T COAD 4159710 + 4159690 4159730 41 GCTGAGAAGCCGGCTGATCCGGTGGACCTGTCCCCACGATG GCTGAGAAGCCGGCTGATCTGGTGGACCTGTCCCCACGATG < 41bp 0.494758217451498 0.712718089203109 NA NA prediction 0.425436178406217 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4159710 chr19:4159709 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_27694 0 0 0 0 2 CREB3L3 chr19:4159661 3'AG 4159661 Downstream 49bp 25205 chr19 4159709 4159709 1 + C T COAD 4159710 + 4159690 4159730 41 GCTGAGAAGCCGGCTGATCCGGTGGACCTGTCCCCACGATG GCTGAGAAGCCGGCTGATCTGGTGGACCTGTCCCCACGATG < 41bp 0.494758217451498 0.712718089203109 NA NA prediction 0.425436178406217 Functional Gain - CREB3L3 ENSG00000060566 CDS Human protein_coding chr19:4159710 chr19:4159709 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_27694 0 0 0 0 2 CREB3L3 chr19:4159779 5'GT 4159779 Upstream 71bp 25206 chr17 79770511 79770511 1 + G A rs531523452 79770512 + 79770492 79770532 41 GTGGCCAAGCTGCGGGCACGGCAGATGCACCACACAGACTA GTGGCCAAGCTGCGGGCACAGCAGATGCACCACACAGACTA < 41bp 0.493499386577644 0.712716716135813 NA NA prediction 0.425433432271627 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79770512 chr17:79770511 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_27695 0 0 0 0 2 GCGR chr17:79770453 3'AG 79770453 Downstream 59bp 25207 chr17 79770511 79770511 1 + G A rs531523452 79770512 + 79770492 79770532 41 GTGGCCAAGCTGCGGGCACGGCAGATGCACCACACAGACTA GTGGCCAAGCTGCGGGCACAGCAGATGCACCACACAGACTA < 41bp 0.493499386577644 0.712716716135813 NA NA prediction 0.425433432271627 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79770512 chr17:79770511 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_27695 0 0 0 0 2 GCGR chr17:79770541 5'GT 79770541 Upstream 31bp 25208 chr17 43318570 43318570 1 + G A LAML 43318571 + 43318551 43318591 41 TGGAAAAACAGCTAAGCCAGGCGCGCAAGGAGTTGGAGACC TGGAAAAACAGCTAAGCCAAGCGCGCAAGGAGTTGGAGACC < 41bp 0.537438110504328 0.750153901421304 NA NA prediction 0.425431581833951 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43318571 chr17:43318570 synonymous SNV . 0 20 hm7G_associated_SNPs_27696 0 0 0 0 1 FMNL1 chr17:43318597 5'GT 43318597 Upstream 28bp 25209 chr8 81430806 81430806 1 + G T rs190969114 81430807 + 81430787 81430827 41 TGGCCAAAACAAGAAACCTGGGAAAATGGCAAGTATTAGTC TGGCCAAAACAAGAAACCTTGGAAAATGGCAAGTATTAGTC < 41bp 0.388011007935131 0.712714481832431 NA NA prediction 0.425428963664862 Functional Gain - ZBTB10 ENSG00000205189 CDS Human protein_coding chr8:81430807 chr8:81430806 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_27697 0 0 0 0 2 ZBTB10 chr8:81430746 3'AG 81430746 Downstream 61bp 25210 chr8 81430806 81430806 1 + G T rs190969114 81430807 + 81430787 81430827 41 TGGCCAAAACAAGAAACCTGGGAAAATGGCAAGTATTAGTC TGGCCAAAACAAGAAACCTTGGAAAATGGCAAGTATTAGTC < 41bp 0.388011007935131 0.712714481832431 NA NA prediction 0.425428963664862 Functional Gain - ZBTB10 ENSG00000205189 CDS Human protein_coding chr8:81430807 chr8:81430806 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_27697 0 0 0 0 2 ZBTB10 chr8:81430766 3'AG 81430766 Downstream 41bp 25211 chr2 120373263 120373263 1 + G T UCEC 120373264 + 120373244 120373284 41 AGGTCCAGGGCACAAAAACGGTTTCAACAAGTAGCACGCAA AGGTCCAGGGCACAAAAACTGTTTCAACAAGTAGCACGCAA < 41bp 0.380618828556115 0.712712968921649 NA NA prediction 0.425425937843299 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120373264 chr2:120373263 nonsynonymous SNV 0.588 0 20 hm7G_associated_SNPs_27698 0 0 0 0 2 CFAP221 chr2:120373187 3'AG 120373187 Downstream 77bp 25212 chr2 120373263 120373263 1 + G T UCEC 120373264 + 120373244 120373284 41 AGGTCCAGGGCACAAAAACGGTTTCAACAAGTAGCACGCAA AGGTCCAGGGCACAAAAACTGTTTCAACAAGTAGCACGCAA < 41bp 0.380618828556115 0.712712968921649 NA NA prediction 0.425425937843299 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120373264 chr2:120373263 nonsynonymous SNV 0.588 0 20 hm7G_associated_SNPs_27698 0 0 0 0 2 CFAP221 chr2:120373285 5'GT 120373285 Upstream 23bp 25213 chr11 65988131 65988131 1 + C T PAAD 65988132 + 65988112 65988152 41 GGCTGGAGCATGTGTCCCGCGAGCAGATCCGGGAAGTGGAA GGCTGGAGCATGTGTCCCGTGAGCAGATCCGGGAAGTGGAA < 41bp 0.510000870307165 0.722713666193707 NA NA prediction 0.425425591773084 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:65988132 chr11:65988131 synonymous SNV . 0 20 hm7G_associated_SNPs_27699 0 0 1 0 1 PACS1 chr11:65988102 3'AG 65988102 Downstream 30bp 25214 chr12 110034317 110034317 1 + G A UCEC 110034318 + 110034298 110034338 41 AACCAGCATCGGTGCCCCCGGCGTCTCCATCCACTCAGCCA AACCAGCATCGGTGCCCCCAGCGTCTCCATCCACTCAGCCA < 41bp 0.518343642135967 0.731055657809951 NA NA prediction 0.425424031347969 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110034318 chr12:110034317 nonsynonymous SNV 0.007 5 20 hm7G_associated_SNPs_27700 0 0 0 0 1 MVK chr12:110034231 3'AG 110034231 Downstream 87bp 25215 chr11 69951883 69951883 1 + C T KIRP 69951884 + 69951864 69951904 41 CTTTTTCGACAGCAAAACCCGGAGCACGATTGTAAGTATCG CTTTTTCGACAGCAAAACCTGGAGCACGATTGTAAGTATCG < 41bp 0.515735296235967 0.728440418293465 NA NA prediction 0.425410244114996 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69951884 chr11:69951883 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27703 0 0 0 2 2 ANO1 chr11:69951840 3'AG 69951840 Downstream 44bp 25216 chr11 69951883 69951883 1 + C T KIRP 69951884 + 69951864 69951904 41 CTTTTTCGACAGCAAAACCCGGAGCACGATTGTAAGTATCG CTTTTTCGACAGCAAAACCTGGAGCACGATTGTAAGTATCG < 41bp 0.515735296235967 0.728440418293465 NA NA prediction 0.425410244114996 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69951884 chr11:69951883 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27703 0 0 0 2 2 ANO1 chr11:69951894 5'GT 69951894 Upstream 12bp 25217 chr7 150704279 150704279 1 + G A SKCM 150704280 + 150704260 150704300 41 CGGCTGGAGGAACTGGGCGGGGAGCGGCTGCTGCAGCTGGG CGGCTGGAGGAACTGGGCGAGGAGCGGCTGCTGCAGCTGGG < 41bp 0.534573486427701 0.747277074618736 NA NA prediction 0.42540717638207 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704280 chr7:150704279 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27705 0 0 0 0 2 NOS3 chr7:150704190 3'AG 150704190 Downstream 90bp 25218 chr7 150704279 150704279 1 + G A SKCM 150704280 + 150704260 150704300 41 CGGCTGGAGGAACTGGGCGGGGAGCGGCTGCTGCAGCTGGG CGGCTGGAGGAACTGGGCGAGGAGCGGCTGCTGCAGCTGGG < 41bp 0.534573486427701 0.747277074618736 NA NA prediction 0.42540717638207 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704280 chr7:150704279 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27705 0 0 0 0 2 NOS3 chr7:150704364 5'GT 150704364 Upstream 86bp 25219 chr15 75111600 75111600 1 + C T BLCA 75111601 + 75111581 75111621 41 TTGGGGTCTCAGCAGCCACCGGCACCCTGGCAGGTGAGGAT TTGGGGTCTCAGCAGCCACTGGCACCCTGGCAGGTGAGGAT < 41bp 0.505897796443616 0.718597612348428 NA NA prediction 0.425399631809623 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75111601 chr15:75111600 synonymous SNV . 0 20 hm7G_associated_SNPs_27706 0 0 0 0 2 LMAN1L chr15:75111613 5'GT 75111613 Upstream 14bp 25220 chr15 75111600 75111600 1 + C T BLCA 75111601 + 75111581 75111621 41 TTGGGGTCTCAGCAGCCACCGGCACCCTGGCAGGTGAGGAT TTGGGGTCTCAGCAGCCACTGGCACCCTGGCAGGTGAGGAT < 41bp 0.505897796443616 0.718597612348428 NA NA prediction 0.425399631809623 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75111601 chr15:75111600 synonymous SNV . 0 20 hm7G_associated_SNPs_27706 0 0 0 0 2 LMAN1L chr15:75111633 5'GT 75111633 Upstream 34bp 25221 chr9 4844532 4844532 1 + G T LUSC 4844533 + 4844513 4844553 41 TTGTATCTCCAGGTCTCCGGGCTTTGGGTTGTCACTGGTTG TTGTATCTCCAGGTCTCCGTGCTTTGGGTTGTCACTGGTTG < 41bp 0.693281827471946 0.905979026786804 NA NA prediction 0.425394398629718 Functional Gain - RCL1 ENSG00000120158 CDS Human protein_coding chr9:4844533 chr9:4844532 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_27707 0 0 1 0 1 RCL1 chr9:4844525 3'AG 4844525 Downstream 8bp 25222 chr7 63709510 63709510 1 + G T LUSC 63709511 + 63709491 63709531 41 GATTTATGGCTAAAAGACCGGGATCCCCTGGAAGCCGAGAA GATTTATGGCTAAAAGACCTGGATCCCCTGGAAGCCGAGAA < 41bp 0.676122080448644 0.888819255297709 NA NA prediction 0.425394349698131 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63709511 chr7:63709510 synonymous SNV . 0 20 hm7G_associated_SNPs_27708 0 0 0 0 1 ZNF679 chr7:63709534 5'GT 63709534 Upstream 25bp 25223 chr6 33172755 33172755 1 + G A rs111493353 33172756 + 33172736 33172776 41 CCGTAGCTGCCTGCGACCTGGACCGGGCAGCGGCACAGGAG CCGTAGCTGCCTGCGACCTAGACCGGGCAGCGGCACAGGAG < 41bp 0.543468786395363 0.756160895109156 NA NA prediction 0.425384217427586 Functional Gain - HSD17B8 ENSG00000204228 CDS Human protein_coding chr6:33172756 chr6:33172755 synonymous SNV . 0 20 hm7G_associated_SNPs_27709 0 0 0 0 1 HSD17B8 chr6:33172679 3'AG 33172679 Downstream 77bp 25224 chr1 27677312 27677312 1 + G T HNSC 27677313 + 27677293 27677333 41 CCCGCAGGCCGAGCTTCAGGGCCGCGTGCTGAGCCTGTCTG CCCGCAGGCCGAGCTTCAGTGCCGCGTGCTGAGCCTGTCTG < 41bp 0.374380955872431 0.712686852467955 NA NA prediction 0.425373704935909 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27677313 chr1:27677312 nonsynonymous SNV 0.801 4 20 hm7G_associated_SNPs_27710 0 0 1 0 1 SYTL1 chr1:27677285 3'AG 27677285 Downstream 28bp 25225 chr18 60630649 60630649 1 + C T CESC 60630650 + 60630630 60630670 41 CTTCTACAGGAGACGCTTCCGGAGCCCCAGCTGTATGGAGT CTTCTACAGGAGACGCTTCTGGAGCCCCAGCTGTATGGAGT < 41bp 0.49038442568474 0.712683743067835 NA NA prediction 0.42536748613567 Functional Gain - PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60630650 chr18:60630649 synonymous SNV . 0 20 hm7G_associated_SNPs_27711 0 0 1 0 2 PHLPP1 chr18:60630601 3'AG 60630601 Downstream 49bp 25226 chr18 60630649 60630649 1 + C T CESC 60630650 + 60630630 60630670 41 CTTCTACAGGAGACGCTTCCGGAGCCCCAGCTGTATGGAGT CTTCTACAGGAGACGCTTCTGGAGCCCCAGCTGTATGGAGT < 41bp 0.49038442568474 0.712683743067835 NA NA prediction 0.42536748613567 Functional Gain - PHLPP1 ENSG00000081913 CDS Human protein_coding chr18:60630650 chr18:60630649 synonymous SNV . 0 20 hm7G_associated_SNPs_27711 0 0 1 0 2 PHLPP1 chr18:60630705 5'GT 60630705 Upstream 57bp 25227 chr6 3118998 3118998 1 + G T rs2231357 3118999 + 3118979 3119019 41 TGGCTGTGCTGGGCGGCCGGGGCGTGTTGCGCCTGCGGCTG TGGCTGTGCTGGGCGGCCGTGGCGTGTTGCGCCTGCGGCTG < 41bp 0.380942829136883 0.712683364953891 NA NA prediction 0.425366729907782 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3118999 chr6:3118998 synonymous SNV . 0 20 hm7G_associated_SNPs_27712 0 0 1 0 1 BPHL chr6:3119081 5'GT 3119081 Upstream 84bp 25228 chr14 101200525 101200525 1 + G A LUSC 101200526 + 101200506 101200546 41 GCACCTGCGTGGATGATGAGGGCCGGGCCTCCCATGCCTCC GCACCTGCGTGGATGATGAAGGCCGGGCCTCCCATGCCTCC < 41bp 0.541305343546938 0.753984141595789 NA NA prediction 0.425357596097703 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101200526 chr14:101200525 synonymous SNV . 0 20 hm7G_associated_SNPs_27713 0 0 1 0 1 DLK1 chr14:101200486 3'AG 101200486 Downstream 40bp 25229 chr1 153660160 153660160 1 + C T COAD 153660161 + 153660141 153660181 41 AATGGCTTCACCCCCTGTGCGGGGCTCCCAGGCTGGTGACG AATGGCTTCACCCCCTGTGTGGGGCTCCCAGGCTGGTGACG < 41bp 0.499575066895826 0.712678159349291 NA NA prediction 0.425356318698582 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153660161 chr1:153660160 nonsynonymous SNV 0.684 2 20 hm7G_associated_SNPs_27714 0 0 0 0 1 NPR1 chr1:153660110 3'AG 153660110 Downstream 51bp 25230 chr21 47411942 47411942 1 + G A READ 47411943 + 47411923 47411963 41 GGGCGAGCCTGGAGCTGACGGGGAGGCGGGGAGACCAGGGA GGGCGAGCCTGGAGCTGACAGGGAGGCGGGGAGACCAGGGA < 41bp 0.569918282779203 0.782594847904187 NA NA prediction 0.425353130249968 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47411943 chr21:47411942 nonsynonymous SNV 0.030 5 20 hm7G_associated_SNPs_27715 0 0 0 0 2 COL6A1 chr21:47411924 3'AG 47411924 Downstream 19bp 25231 chr21 47411942 47411942 1 + G A READ 47411943 + 47411923 47411963 41 GGGCGAGCCTGGAGCTGACGGGGAGGCGGGGAGACCAGGGA GGGCGAGCCTGGAGCTGACAGGGAGGCGGGGAGACCAGGGA < 41bp 0.569918282779203 0.782594847904187 NA NA prediction 0.425353130249968 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47411943 chr21:47411942 nonsynonymous SNV 0.030 5 20 hm7G_associated_SNPs_27715 0 0 0 0 2 COL6A1 chr21:47411986 5'GT 47411986 Upstream 45bp 25232 chr1 37945956 37945956 1 + G A rs34404723 37945957 + 37945937 37945977 41 GTGAACTGGTTTCTGGAGCGGGGCCACACAGACATCACAGT GTGAACTGGTTTCTGGAGCAGGGCCACACAGACATCACAGT < 41bp 0.514199708315291 0.726870561752772 NA NA prediction 0.425341706874961 Functional Gain - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37945957 chr1:37945956 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27717 0 0 0 0 2 ZC3H12A chr1:37945891 3'AG 37945891 Downstream 66bp 25233 chr1 37945956 37945956 1 + G A rs34404723 37945957 + 37945937 37945977 41 GTGAACTGGTTTCTGGAGCGGGGCCACACAGACATCACAGT GTGAACTGGTTTCTGGAGCAGGGCCACACAGACATCACAGT < 41bp 0.514199708315291 0.726870561752772 NA NA prediction 0.425341706874961 Functional Gain - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37945957 chr1:37945956 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27717 0 0 0 0 2 ZC3H12A chr1:37946030 5'GT 37946030 Upstream 75bp 25234 chr10 105181303 105181303 1 + C T UCEC 105181304 + 105181284 105181324 41 GGAGGAGCTGCAGGGCGTGCGCAGCCTTATGAGCAACCGAG GGAGGAGCTGCAGGGCGTGTGCAGCCTTATGAGCAACCGAG < 41bp 0.498831020016037 0.712670515909215 NA NA prediction 0.42534103181843 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105181304 chr10:105181303 nonsynonymous SNV 0.946 4 20 hm7G_associated_SNPs_27718 0 0 1 0 1 PDCD11 chr10:105181324 5'GT 105181324 Upstream 22bp 25235 chr7 75045458 75045458 1 + G A UCEC 75045459 + 75045439 75045479 41 ATGCGCTGCAGCAGAACCCGGGCGCCTTCAGGTACAGGGCG ATGCGCTGCAGCAGAACCCAGGCGCCTTCAGGTACAGGGCG < 41bp 0.489318702830377 0.712667485202214 NA NA prediction 0.425334970404428 Functional Gain - NSUN5P1 ENSG00000223705 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:75045459 chr7:75045458 . . 0 20 hm7G_associated_SNPs_27720 0 0 1 0 1 NSUN5P1 chr7:75045469 5'GT 75045469 Upstream 12bp 25236 chr11 93530834 93530834 1 + G T BLCA 93530835 + 93530815 93530855 41 TCATTACAGTCCAGTGAAGGGCTTCTGGAAAAAATAATTAA TCATTACAGTCCAGTGAAGTGCTTCTGGAAAAAATAATTAA < 41bp 0.68139851757045 0.894065993638028 NA NA prediction 0.425334952135155 Functional Gain - MED17 ENSG00000042429 CDS Human protein_coding chr11:93530835 chr11:93530834 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_27721 0 0 1 0 1 MED17 chr11:93530885 5'GT 93530885 Upstream 52bp 25237 chr1 25687189 25687189 1 + G T UCEC 25687190 + 25687170 25687210 41 GGCCGCACTGAAGACTTATGGCAGTGAACACATCTGATTTC GGCCGCACTGAAGACTTATTGCAGTGAACACATCTGATTTC < 41bp 0.399427342124756 0.712666294727823 NA NA prediction 0.425332589455646 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25687190 chr1:25687189 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27722 0 0 1 0 1 TMEM50A chr1:25687151 3'AG 25687151 Downstream 39bp 25238 chr5 122515961 122515961 1 + C T rs182786843 122515962 + 122515942 122515982 41 ACTGTGGTCGTGCCTTTGCCGGGGCCACCACCCTCAACAAC ACTGTGGTCGTGCCTTTGCTGGGGCCACCACCCTCAACAAC < 41bp 0.520587360742195 0.733252055466604 NA NA prediction 0.425329389448817 Functional Gain - PRDM6 ENSG00000061455 CDS Human protein_coding chr5:122515962 chr5:122515961 synonymous SNV . 0 20 hm7G_associated_SNPs_27723 0 0 0 0 1 PRDM6 chr5:122516017 5'GT 122516017 Upstream 57bp 25239 chr7 66094165 66094165 1 + G A LUSC 66094166 + 66094146 66094186 41 CGCCGACGGCCACGCAGGCGGGGCACGCGCTGCCCCTGCTG CGCCGACGGCCACGCAGGCAGGGCACGCGCTGCCCCTGCTG < 41bp 0.486124301144246 0.712660216607553 NA NA prediction 0.425320433215106 Functional Gain - KCTD7 ENSG00000243335 CDS Human protein_coding chr7:66094166 chr7:66094165 synonymous SNV . 0 20 hm7G_associated_SNPs_27726 0 0 0 0 1 KCTD7 chr7:66094195 5'GT 66094195 Upstream 31bp 25240 chr20 30662495 30662495 1 + C T CESC 30662496 + 30662476 30662516 41 ACATCCCAAGCAACTATGTCGCCCGCGTTGACTCTCTGGAG ACATCCCAAGCAACTATGTTGCCCGCGTTGACTCTCTGGAG < 41bp 0.508147005847665 0.720806955487531 NA NA prediction 0.425319899279732 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30662496 chr20:30662495 synonymous SNV . 0 20 hm7G_associated_SNPs_27727 0 0 0 0 2 HCK chr20:30662426 3'AG 30662426 Downstream 70bp 25241 chr20 30662495 30662495 1 + C T CESC 30662496 + 30662476 30662516 41 ACATCCCAAGCAACTATGTCGCCCGCGTTGACTCTCTGGAG ACATCCCAAGCAACTATGTTGCCCGCGTTGACTCTCTGGAG < 41bp 0.508147005847665 0.720806955487531 NA NA prediction 0.425319899279732 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30662496 chr20:30662495 synonymous SNV . 0 20 hm7G_associated_SNPs_27727 0 0 0 0 2 HCK chr20:30662524 5'GT 30662524 Upstream 30bp 25242 chr7 129094344 129094344 1 + C T LUSC 129094345 + 129094325 129094365 41 CTGTGGGTGGAGAACAGCCCGGGAGACCTTCCGCACTGAAT CTGTGGGTGGAGAACAGCCTGGGAGACCTTCCGCACTGAAT < 41bp 0.524539265255879 0.737196432594671 NA NA prediction 0.425314334677583 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129094345 chr7:129094344 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27728 0 0 1 0 1 STRIP2 chr7:129094368 5'GT 129094368 Upstream 25bp 25243 chr9 116186500 116186500 1 + G T ESCA 116186501 + 116186481 116186521 41 CAGAGATGAAGATAAAATTGGCCATGATGAAAAAGAATCTT CAGAGATGAAGATAAAATTTGCCATGATGAAAAAGAATCTT < 41bp 0.693629187988961 0.906286049368564 NA NA prediction 0.425313722759207 Functional Gain - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116186501 chr9:116186500 nonsynonymous SNV 0.874 3 20 hm7G_associated_SNPs_27729 0 0 0 0 2 C9orf43 chr9:116186446 3'AG 116186446 Downstream 55bp 25244 chr9 116186500 116186500 1 + G T ESCA 116186501 + 116186481 116186521 41 CAGAGATGAAGATAAAATTGGCCATGATGAAAAAGAATCTT CAGAGATGAAGATAAAATTTGCCATGATGAAAAAGAATCTT < 41bp 0.693629187988961 0.906286049368564 NA NA prediction 0.425313722759207 Functional Gain - C9orf43 ENSG00000157653 CDS Human protein_coding chr9:116186501 chr9:116186500 nonsynonymous SNV 0.874 3 20 hm7G_associated_SNPs_27729 0 0 0 0 2 C9orf43 chr9:116186596 5'GT 116186596 Upstream 97bp 25245 chr1 109271412 109271412 1 + C T STAD 109271413 + 109271393 109271433 41 AGGAGAGTCCTGCACCATGCGGGGCTTGCCCTGTGGCTCAG AGGAGAGTCCTGCACCATGTGGGGCTTGCCCTGTGGCTCAG < 41bp 0.503352093988197 0.716002110527372 NA NA prediction 0.42530003307835 Functional Gain - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109271413 chr1:109271412 nonsynonymous SNV 0.012 1 20 hm7G_associated_SNPs_27731 0 0 0 0 1 FNDC7 chr1:109271508 5'GT 109271508 Upstream 97bp 25246 chr16 30198725 30198725 1 + G A SKCM 30198726 + 30198706 30198746 41 AAGGACCGTCCCCACGAGGGGACCCGGCCCGTGCGTGCAGT AAGGACCGTCCCCACGAGGAGACCCGGCCCGTGCGTGCAGT < 41bp 0.521214563935788 0.733853234210016 NA NA prediction 0.425277340548455 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198726 chr16:30198725 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_27735 0 0 1 0 2 CORO1A chr16:30198703 3'AG 30198703 Downstream 23bp 25247 chr16 30198725 30198725 1 + G A SKCM 30198726 + 30198706 30198746 41 AAGGACCGTCCCCACGAGGGGACCCGGCCCGTGCGTGCAGT AAGGACCGTCCCCACGAGGAGACCCGGCCCGTGCGTGCAGT < 41bp 0.521214563935788 0.733853234210016 NA NA prediction 0.425277340548455 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198726 chr16:30198725 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_27735 0 0 1 0 2 CORO1A chr16:30198822 5'GT 30198822 Upstream 98bp 25248 chr8 1817379 1817379 1 + C T LGG 1817380 + 1817360 1817400 41 ATCCAGAGGAAGCAATTTACGATGACGTTCCAAGGGAAAAC ATCCAGAGGAAGCAATTTATGATGACGTTCCAAGGGAAAAC < 41bp 0.505582349077494 0.718219266405691 NA NA prediction 0.425273834656394 Functional Gain - ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1817380 chr8:1817379 synonymous SNV . 0 20 hm7G_associated_SNPs_27736 0 0 1 0 2 ARHGEF10 chr8:1817360 3'AG 1817360 Downstream 20bp 25249 chr8 1817379 1817379 1 + C T LGG 1817380 + 1817360 1817400 41 ATCCAGAGGAAGCAATTTACGATGACGTTCCAAGGGAAAAC ATCCAGAGGAAGCAATTTATGATGACGTTCCAAGGGAAAAC < 41bp 0.505582349077494 0.718219266405691 NA NA prediction 0.425273834656394 Functional Gain - ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1817380 chr8:1817379 synonymous SNV . 0 20 hm7G_associated_SNPs_27736 0 0 1 0 2 ARHGEF10 chr8:1817416 5'GT 1817416 Upstream 38bp 25250 chr5 134223831 134223831 1 + G T PRAD 134223832 + 134223812 134223852 41 TGAGGAGAGAAACATTACAGGATTAGAAAATTTCACTCTGA TGAGGAGAGAAACATTACATGATTAGAAAATTTCACTCTGA < 41bp 0.396186507040276 0.712636395544245 NA NA prediction 0.42527279108849 Functional Gain - TXNDC15 ENSG00000113621 CDS Human protein_coding chr5:134223832 chr5:134223831 stopgain 0.012 1 20 hm7G_associated_SNPs_27737 0 0 1 0 1 TXNDC15 chr5:134223872 5'GT 134223872 Upstream 42bp 25251 chr1 23191452 23191452 1 + C T PAAD 23191453 + 23191433 23191473 41 GGACCCCTCCCCGCGACTCCGGAGGCCGAGAGGACCTCGTC GGACCCCTCCCCGCGACTCTGGAGGCCGAGAGGACCTCGTC < 41bp 0.516169385643873 0.728802808561964 NA NA prediction 0.425266845836182 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23191453 chr1:23191452 synonymous SNV . 0 20 hm7G_associated_SNPs_27738 0 0 0 0 1 EPHB2 chr1:23191370 3'AG 23191370 Downstream 83bp 25252 chr22 32000320 32000320 1 + G A COAD 32000321 + 32000301 32000341 41 GCCCTGCGGGGAGCGGAGCGGCAGAAGCTGATGCGAGCAGA GCCCTGCGGGGAGCGGAGCAGCAGAAGCTGATGCGAGCAGA < 41bp 0.50126007503138 0.713893361187844 NA NA prediction 0.425266572312927 Functional Gain - SFI1 ENSG00000198089 CDS Human protein_coding chr22:32000321 chr22:32000320 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_27739 0 0 1 0 2 SFI1 chr22:32000295 3'AG 32000295 Downstream 26bp 25253 chr22 32000320 32000320 1 + G A COAD 32000321 + 32000301 32000341 41 GCCCTGCGGGGAGCGGAGCGGCAGAAGCTGATGCGAGCAGA GCCCTGCGGGGAGCGGAGCAGCAGAAGCTGATGCGAGCAGA < 41bp 0.50126007503138 0.713893361187844 NA NA prediction 0.425266572312927 Functional Gain - SFI1 ENSG00000198089 CDS Human protein_coding chr22:32000321 chr22:32000320 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_27739 0 0 1 0 2 SFI1 chr22:32000390 5'GT 32000390 Upstream 71bp 25254 chr5 31302334 31302334 1 + G T LUAD 31302335 + 31302315 31302355 41 TGAGTACAGCATCACAGACGGTGAGGGGCTGGATATGTTTG TGAGTACAGCATCACAGACTGTGAGGGGCTGGATATGTTTG < 41bp 0.3855933507446 0.712625538695638 NA NA prediction 0.425251077391277 Functional Gain - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31302335 chr5:31302334 nonsynonymous SNV 0.955 4 20 hm7G_associated_SNPs_27741 0 0 0 0 1 CDH6 chr5:31302405 5'GT 31302405 Upstream 72bp 25255 chr1 158063507 158063507 1 + C T UCEC 158063508 + 158063488 158063528 41 CTGACCGGGAGGATGACACCGCCAGCGTCTCCACAGCAACC CTGACCGGGAGGATGACACTGCCAGCGTCTCCACAGCAACC < 41bp 0.498351878590264 0.712622694137919 NA NA prediction 0.425245388275837 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063508 chr1:158063507 synonymous SNV . 0 20 hm7G_associated_SNPs_27742 0 0 0 0 2 KIRREL chr1:158063413 3'AG 158063413 Downstream 95bp 25256 chr1 158063507 158063507 1 + C T UCEC 158063508 + 158063488 158063528 41 CTGACCGGGAGGATGACACCGCCAGCGTCTCCACAGCAACC CTGACCGGGAGGATGACACTGCCAGCGTCTCCACAGCAACC < 41bp 0.498351878590264 0.712622694137919 NA NA prediction 0.425245388275837 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158063508 chr1:158063507 synonymous SNV . 0 20 hm7G_associated_SNPs_27742 0 0 0 0 2 KIRREL chr1:158063552 5'GT 158063552 Upstream 46bp 25257 chr2 36744652 36744652 1 + C T LAML 36744653 + 36744633 36744673 41 GCTCTGCCAGAACCCCTCACGCACCCAGGATTCCTGCTGCC GCTCTGCCAGAACCCCTCATGCACCCAGGATTCCTGCTGCC < 41bp 0.516846921769873 0.729468113457936 NA NA prediction 0.425242383376127 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36744653 chr2:36744652 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_27744 0 0 1 0 1 CRIM1 chr2:36744685 5'GT 36744685 Upstream 34bp 25258 chr19 13867076 13867076 1 + G T UCEC 13867077 + 13867057 13867097 41 GGGCTCGGAAGCTGTCACAGGGCATCCTCATCATCCGGTAA GGGCTCGGAAGCTGTCACATGGCATCCTCATCATCCGGTAA < 41bp 0.355970339794757 0.712605369423461 NA NA prediction 0.425210738846922 Functional Gain - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13867077 chr19:13867076 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_27747 0 0 0 0 2 CCDC130 chr19:13867011 3'AG 13867011 Downstream 66bp 25259 chr19 13867076 13867076 1 + G T UCEC 13867077 + 13867057 13867097 41 GGGCTCGGAAGCTGTCACAGGGCATCCTCATCATCCGGTAA GGGCTCGGAAGCTGTCACATGGCATCCTCATCATCCGGTAA < 41bp 0.355970339794757 0.712605369423461 NA NA prediction 0.425210738846922 Functional Gain - CCDC130 ENSG00000104957 CDS Human protein_coding chr19:13867077 chr19:13867076 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_27747 0 0 0 0 2 CCDC130 chr19:13867093 5'GT 13867093 Upstream 18bp 25260 chr8 22429919 22429919 1 + G A UCEC 22429920 + 22429900 22429940 41 AGCTGCGCGAGGGGGACAGGGTGGATGTCATGCAGCAGTGT AGCTGCGCGAGGGGGACAGAGTGGATGTCATGCAGCAGTGT < 41bp 0.504580614309786 0.717185271737499 NA NA prediction 0.425209314855427 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429920 chr8:22429919 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27748 0 0 1 0 2 SORBS3 chr8:22429853 3'AG 22429853 Downstream 67bp 25261 chr8 22429919 22429919 1 + G A UCEC 22429920 + 22429900 22429940 41 AGCTGCGCGAGGGGGACAGGGTGGATGTCATGCAGCAGTGT AGCTGCGCGAGGGGGACAGAGTGGATGTCATGCAGCAGTGT < 41bp 0.504580614309786 0.717185271737499 NA NA prediction 0.425209314855427 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22429920 chr8:22429919 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_27748 0 0 1 0 2 SORBS3 chr8:22429959 5'GT 22429959 Upstream 41bp 25262 chr9 139753216 139753216 1 + G A BRCA 139753217 + 139753197 139753237 41 GTGCTGGGCCCCGGGGGCCGGGCCGCCTGGCTGCGCAGCGA GTGCTGGGCCCCGGGGGCCAGGCCGCCTGGCTGCGCAGCGA < 41bp 0.571638382894623 0.784229548436054 NA NA prediction 0.425182331082863 Functional Gain - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139753217 chr9:139753216 nonsynonymous SNV 0.110 0 20 hm7G_associated_SNPs_27752 0 0 1 0 2 MAMDC4 chr9:139753171 3'AG 139753171 Downstream 46bp 25263 chr9 139753216 139753216 1 + G A BRCA 139753217 + 139753197 139753237 41 GTGCTGGGCCCCGGGGGCCGGGCCGCCTGGCTGCGCAGCGA GTGCTGGGCCCCGGGGGCCAGGCCGCCTGGCTGCGCAGCGA < 41bp 0.571638382894623 0.784229548436054 NA NA prediction 0.425182331082863 Functional Gain - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139753217 chr9:139753216 nonsynonymous SNV 0.110 0 20 hm7G_associated_SNPs_27752 0 0 1 0 2 MAMDC4 chr9:139753305 5'GT 139753305 Upstream 90bp 25264 chr1 6504600 6504600 1 + G A LGG 6504601 + 6504581 6504621 41 AGCTGGAGGCTAAGCAGCCGGATTCAGGCATGTCCTCACCC AGCTGGAGGCTAAGCAGCCAGATTCAGGCATGTCCTCACCC < 41bp 0.534213545422965 0.746801313598884 NA NA prediction 0.425175536351838 Functional Gain - ESPN ENSG00000187017 CDS Human protein_coding chr1:6504601 chr1:6504600 synonymous SNV . 0 20 hm7G_associated_SNPs_27753 0 0 1 0 1 ESPN chr1:6504541 3'AG 6504541 Downstream 60bp 25265 chr17 40940391 40940391 1 + G A STAD 40940392 + 40940372 40940412 41 CCCCCAGGGAGGAATCTCCGGCGCAGACCCCGATCCCGGCT CCCCCAGGGAGGAATCTCCAGCGCAGACCCCGATCCCGGCT < 41bp 0.542482340875468 0.755068311337782 NA NA prediction 0.425171940924628 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940392 chr17:40940391 nonsynonymous SNV 0.830 3 20 hm7G_associated_SNPs_27754 0 0 1 0 1 WNK4 chr17:40940308 3'AG 40940308 Downstream 84bp 25266 chr22 24911253 24911253 1 + C T HNSC 24911254 + 24911234 24911274 41 GGTGAACATTTGCTACGGGCGGCACCACCCCCTCAACTGGC GGTGAACATTTGCTACGGGTGGCACCACCCCCTCAACTGGC < 41bp 0.495354309322336 0.712571777114502 NA NA prediction 0.425143554229005 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24911254 chr22:24911253 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_27758 0 0 0 0 2 UPB1 chr22:24911169 3'AG 24911169 Downstream 85bp 25267 chr22 24911253 24911253 1 + C T HNSC 24911254 + 24911234 24911274 41 GGTGAACATTTGCTACGGGCGGCACCACCCCCTCAACTGGC GGTGAACATTTGCTACGGGTGGCACCACCCCCTCAACTGGC < 41bp 0.495354309322336 0.712571777114502 NA NA prediction 0.425143554229005 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24911254 chr22:24911253 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_27758 0 0 0 0 2 UPB1 chr22:24911338 5'GT 24911338 Upstream 86bp 25268 chr16 77228320 77228320 1 + G A STAD 77228321 + 77228301 77228341 41 CAGCAGCCCAGCTGCGGGGGGAGCTGCTAGCTGTGCACGCA CAGCAGCCCAGCTGCGGGGAGAGCTGCTAGCTGTGCACGCA < 41bp 0.504209785884194 0.716772653993022 NA NA prediction 0.425125736217656 Functional Gain - MON1B ENSG00000103111 CDS Human protein_coding chr16:77228321 chr16:77228320 synonymous SNV . 0 20 hm7G_associated_SNPs_27759 0 0 1 0 1 MON1B chr16:77228232 3'AG 77228232 Downstream 89bp 25269 chr1 29602223 29602223 1 + G A UCEC 29602224 + 29602204 29602244 41 TGTCCTCACTAACCCTGAGGGGCGCAAAGAGGGCAAGGAGG TGTCCTCACTAACCCTGAGAGGCGCAAAGAGGGCAAGGAGG < 41bp 0.506651988208122 0.719214365592239 NA NA prediction 0.425124754768234 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29602224 chr1:29602223 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27760 0 0 1 0 1 PTPRU chr1:29602268 5'GT 29602268 Upstream 46bp 25270 chr6 158464403 158464403 1 + C T UCEC 158464404 + 158464384 158464424 41 CAGATCAGAGGCTCCGTTCCGCTGTTCTGGGAACAGCCAGG CAGATCAGAGGCTCCGTTCTGCTGTTCTGGGAACAGCCAGG < 41bp 0.502566841834138 0.715126577717593 NA NA prediction 0.42511947176691 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158464404 chr6:158464403 nonsynonymous SNV 0.979 5 20 hm7G_associated_SNPs_27761 0 0 1 0 2 SYNJ2 chr6:158464348 3'AG 158464348 Downstream 56bp 25271 chr6 158464403 158464403 1 + C T UCEC 158464404 + 158464384 158464424 41 CAGATCAGAGGCTCCGTTCCGCTGTTCTGGGAACAGCCAGG CAGATCAGAGGCTCCGTTCTGCTGTTCTGGGAACAGCCAGG < 41bp 0.502566841834138 0.715126577717593 NA NA prediction 0.42511947176691 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158464404 chr6:158464403 nonsynonymous SNV 0.979 5 20 hm7G_associated_SNPs_27761 0 0 1 0 2 SYNJ2 chr6:158464431 5'GT 158464431 Upstream 29bp 25272 chr11 130332446 130332446 1 + C T rs552760671 130332447 + 130332427 130332467 41 TCCCTGCCCGAGGATCTGCCGGGCGCCAGCTACACCCTGAG TCCCTGCCCGAGGATCTGCTGGGCGCCAGCTACACCCTGAG < 41bp 0.501278895873203 0.713835547180968 NA NA prediction 0.42511330261553 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130332447 chr11:130332446 nonsynonymous SNV 0.569 3 20 hm7G_associated_SNPs_27763 0 0 0 0 1 ADAMTS15 chr11:130332392 3'AG 130332392 Downstream 55bp 25273 chr22 24580172 24580172 1 + G A STAD 24580173 + 24580153 24580193 41 GACGCGTTGGCAATACTACGGCACCGCCAACACCTCAGGCA GACGCGTTGGCAATACTACAGCACCGCCAACACCTCAGGCA < 41bp 0.551768265668132 0.764324238000629 NA NA prediction 0.425111944664994 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24580173 chr22:24580172 nonsynonymous SNV 0.608 4 20 hm7G_associated_SNPs_27764 0 0 0 0 2 SUSD2 chr22:24580104 3'AG 24580104 Downstream 69bp 25274 chr22 24580172 24580172 1 + G A STAD 24580173 + 24580153 24580193 41 GACGCGTTGGCAATACTACGGCACCGCCAACACCTCAGGCA GACGCGTTGGCAATACTACAGCACCGCCAACACCTCAGGCA < 41bp 0.551768265668132 0.764324238000629 NA NA prediction 0.425111944664994 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24580173 chr22:24580172 nonsynonymous SNV 0.608 4 20 hm7G_associated_SNPs_27764 0 0 0 0 2 SUSD2 chr22:24580271 5'GT 24580271 Upstream 100bp 25275 chr3 38180479 38180479 1 + G A HNSC 38180480 + 38180460 38180500 41 TCGAGCTGCTTACCAAGCTGGGCCGCGACGACGTGCTGCTG TCGAGCTGCTTACCAAGCTAGGCCGCGACGACGTGCTGCTG < 41bp 0.539011574310261 0.75155918328918 NA NA prediction 0.425095217957838 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38180480 chr3:38180479 synonymous SNV . 0 20 hm7G_associated_SNPs_27768 0 0 1 0 1 MYD88 chr3:38180519 5'GT 38180519 Upstream 41bp 25276 chr12 113714766 113714766 1 + C T LGG 113714767 + 113714747 113714787 41 CTTCAATGACATTGAGAAACGCAAGTTCAAGTCTTTGCTAC CTTCAATGACATTGAGAAATGCAAGTTCAAGTCTTTGCTAC < 41bp 0.51103218568264 0.723579498955119 NA NA prediction 0.425094626544958 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113714767 chr12:113714766 nonsynonymous SNV 0.959 2 20 hm7G_associated_SNPs_27769 0 0 0 0 1 TPCN1 chr12:113714724 3'AG 113714724 Downstream 43bp 25277 chr8 144822037 144822037 1 + G T rs7831467 144822038 + 144822018 144822058 41 TTTTCCCTTAGGGAAGCCCGGGGAGAACCGCCCGCCGCAGA TTTTCCCTTAGGGAAGCCCTGGGAGAACCGCCCGCCGCAGA < 41bp 0.686896389453776 0.899441811152094 NA NA prediction 0.425090843396636 Functional Gain - FAM83H-AS1 ENSG00000203499 ncRNA_exonic Human protein_coding chr8:144822038 chr8:144822037 . . 0 20 hm7G_associated_SNPs_27770 0 0 0 0 2 FAM83H-AS1 chr8:144822029 3'AG 144822029 Downstream 9bp 25278 chr8 144822037 144822037 1 + G T rs7831467 144822038 + 144822018 144822058 41 TTTTCCCTTAGGGAAGCCCGGGGAGAACCGCCCGCCGCAGA TTTTCCCTTAGGGAAGCCCTGGGAGAACCGCCCGCCGCAGA < 41bp 0.686896389453776 0.899441811152094 NA NA prediction 0.425090843396636 Functional Gain - FAM83H-AS1 ENSG00000203499 ncRNA_exonic Human protein_coding chr8:144822038 chr8:144822037 . . 0 20 hm7G_associated_SNPs_27770 0 0 0 0 2 FAM83H-AS1 chr8:144822118 5'GT 144822118 Upstream 82bp 25279 chr7 128846367 128846367 1 + G A rs117663825 128846368 + 128846348 128846388 41 AGAACTACCGATACCGTGCGGGCTTCGTGCTGGCCCCAATC AGAACTACCGATACCGTGCAGGCTTCGTGCTGGCCCCAATC < 41bp 0.489165686359935 0.712545088178108 NA NA prediction 0.425090176356217 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128846368 chr7:128846367 synonymous SNV . 0 20 hm7G_associated_SNPs_27771 0 0 0 0 2 SMO chr7:128846305 3'AG 128846305 Downstream 63bp 25280 chr7 128846367 128846367 1 + G A rs117663825 128846368 + 128846348 128846388 41 AGAACTACCGATACCGTGCGGGCTTCGTGCTGGCCCCAATC AGAACTACCGATACCGTGCAGGCTTCGTGCTGGCCCCAATC < 41bp 0.489165686359935 0.712545088178108 NA NA prediction 0.425090176356217 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128846368 chr7:128846367 synonymous SNV . 0 20 hm7G_associated_SNPs_27771 0 0 0 0 2 SMO chr7:128846428 5'GT 128846428 Upstream 62bp 25281 chr17 79987055 79987055 1 + G A COAD 79987056 + 79987036 79987076 41 AGGCGGCGCGGCTGTCCCTGGAGGAGGTGAGTGCCCACCAG AGGCGGCGCGGCTGTCCCTAGAGGAGGTGAGTGCCCACCAG < 41bp 0.520392414930739 0.732934133303073 NA NA prediction 0.425083436744669 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79987056 chr17:79987055 synonymous SNV . 0 20 hm7G_associated_SNPs_27772 0 0 1 0 2 LRRC45 chr17:79986969 3'AG 79986969 Downstream 87bp 25282 chr17 79987055 79987055 1 + G A COAD 79987056 + 79987036 79987076 41 AGGCGGCGCGGCTGTCCCTGGAGGAGGTGAGTGCCCACCAG AGGCGGCGCGGCTGTCCCTAGAGGAGGTGAGTGCCCACCAG < 41bp 0.520392414930739 0.732934133303073 NA NA prediction 0.425083436744669 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79987056 chr17:79987055 synonymous SNV . 0 20 hm7G_associated_SNPs_27772 0 0 1 0 2 LRRC45 chr17:79987061 5'GT 79987061 Upstream 7bp 25283 chr6 80749470 80749470 1 + G T LUSC 80749471 + 80749451 80749491 41 TTTGTACTATATGACTTACGGGAAAACACCATTTCAGCAGA TTTGTACTATATGACTTACTGGAAAACACCATTTCAGCAGA < 41bp 0.672176072406733 0.884712117754079 NA NA prediction 0.425072090694692 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80749471 chr6:80749470 nonsynonymous SNV 0.150 5 20 hm7G_associated_SNPs_27773 0 0 1 0 1 TTK chr6:80749413 3'AG 80749413 Downstream 58bp 25284 chr17 38510573 38510573 1 + G A UCEC 38510574 + 38510554 38510594 41 ATCCTGCGGATCTGCACGCGGTACACGCCCGAGCAGGACAC ATCCTGCGGATCTGCACGCAGTACACGCCCGAGCAGGACAC < 41bp 0.497572813602488 0.712521053578368 NA NA prediction 0.425042107156736 Functional Gain - RARA ENSG00000131759 CDS Human protein_coding chr17:38510574 chr17:38510573 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_27777 0 0 1 0 1 RARA chr17:38510554 3'AG 38510554 Downstream 20bp 25285 chr13 113718650 113718650 1 + C T COAD 113718651 + 113718631 113718671 41 GCTCCGTACCAGACTTACACGGTTACATCGATAAGTCGCAG GCTCCGTACCAGACTTACATGGTTACATCGATAAGTCGCAG < 41bp 0.524888273660074 0.737403261747143 NA NA prediction 0.425029976174139 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113718651 chr13:113718650 synonymous SNV . 0 20 hm7G_associated_SNPs_27781 0 0 1 0 2 MCF2L chr13:113718618 3'AG 113718618 Downstream 33bp 25286 chr13 113718650 113718650 1 + C T COAD 113718651 + 113718631 113718671 41 GCTCCGTACCAGACTTACACGGTTACATCGATAAGTCGCAG GCTCCGTACCAGACTTACATGGTTACATCGATAAGTCGCAG < 41bp 0.524888273660074 0.737403261747143 NA NA prediction 0.425029976174139 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113718651 chr13:113718650 synonymous SNV . 0 20 hm7G_associated_SNPs_27781 0 0 1 0 2 MCF2L chr13:113718734 5'GT 113718734 Upstream 85bp 25287 chr16 68901033 68901033 1 + C T SKCM 68901034 + 68901014 68901054 41 TCGGGCCCCAGCTTGGCTTCGGCGTCTATGTGGACAGCTGC TCGGGCCCCAGCTTGGCTTTGGCGTCTATGTGGACAGCTGC < 41bp 0.516044806911205 0.728559101434869 NA NA prediction 0.425028589047328 Functional Gain - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68901034 chr16:68901033 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_27783 0 0 1 0 2 TANGO6 chr16:68900982 3'AG 68900982 Downstream 52bp 25288 chr16 68901033 68901033 1 + C T SKCM 68901034 + 68901014 68901054 41 TCGGGCCCCAGCTTGGCTTCGGCGTCTATGTGGACAGCTGC TCGGGCCCCAGCTTGGCTTTGGCGTCTATGTGGACAGCTGC < 41bp 0.516044806911205 0.728559101434869 NA NA prediction 0.425028589047328 Functional Gain - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68901034 chr16:68901033 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_27783 0 0 1 0 2 TANGO6 chr16:68901123 5'GT 68901123 Upstream 91bp 25289 chr1 43675572 43675572 1 + C T GBM 43675573 + 43675553 43675593 41 ATGAGTACCAGGCCCATGCCGGTCCTATCACCAAGGTGAGC ATGAGTACCAGGCCCATGCTGGTCCTATCACCAAGGTGAGC < 41bp 0.507868397863666 0.72038172919683 NA NA prediction 0.425026662666329 Functional Gain - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43675573 chr1:43675572 synonymous SNV . 0 20 hm7G_associated_SNPs_27784 0 0 0 0 1 CFAP57 chr1:43675587 5'GT 43675587 Upstream 16bp 25290 chr20 32332957 32332957 1 + C T UCEC 32332958 + 32332938 32332978 41 TGTAAGAAGCAATTCAACTCGCTGCCAGCGTTTATGACCCA TGTAAGAAGCAATTCAACTTGCTGCCAGCGTTTATGACCCA < 41bp 0.497931999629361 0.712508384069473 NA NA prediction 0.425016768138946 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32332958 chr20:32332957 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_27786 0 0 0 0 1 ZNF341 chr20:32332909 3'AG 32332909 Downstream 49bp 25291 chr2 177053626 177053626 1 - C T STAD 177053625 - 177053605 177053645 41 GGCTGCAGAGCCACGGGCCGGGCGTCGGAGCGGCAGAACTT GGCTGCAGAGCCACGGGCCAGGCGTCGGAGCGGCAGAACTT < 41bp 0.49278727508065 0.7125060193201 NA NA prediction 0.4250120386402 Functional Gain - HOXD1 ENSG00000128645 CDS Human protein_coding chr2:177053625 chr2:177053626 nonsynonymous SNV 0.584 2 20 hm7G_associated_SNPs_27788 0 0 0 0 1 HOXD1 chr2:177053542 5'GT 177053542 Upstream 85bp 25292 chr10 13213187 13213187 1 + C T CESC 13213188 + 13213168 13213208 41 CAGATGAAGAAGAAGTTCCCGCATCACAGTCAACTGAAAAT CAGATGAAGAAGAAGTTCCTGCATCACAGTCAACTGAAAAT < 41bp 0.509674661799934 0.722180566971667 NA NA prediction 0.425011810343465 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13213188 chr10:13213187 synonymous SNV . 0 20 hm7G_associated_SNPs_27789 0 0 1 0 1 MCM10 chr10:13213263 5'GT 13213263 Upstream 77bp 25293 chr1 177226445 177226445 1 + C T CESC 177226446 + 177226426 177226466 41 AGACCCTGCACCAGCTGGCCGCCTCCTACTTCATCGACAGA AGACCCTGCACCAGCTGGCTGCCTCCTACTTCATCGACAGA < 41bp 0.498588108570101 0.712503839504765 NA NA prediction 0.42500767900953 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177226446 chr1:177226445 synonymous SNV . 0 20 hm7G_associated_SNPs_27790 0 0 0 0 1 BRINP2 chr1:177226520 5'GT 177226520 Upstream 76bp 25294 chr1 17552363 17552363 1 + C T BLCA 17552364 + 17552344 17552384 41 CTTGCTGGTGAACTGTGACCGGGACAATCACAGGTCCGCAG CTTGCTGGTGAACTGTGACTGGGACAATCACAGGTCCGCAG < 41bp 0.515505191211836 0.728003219014569 NA NA prediction 0.424996055605465 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17552364 chr1:17552363 nonsynonymous SNV 0.928 3 20 hm7G_associated_SNPs_27792 0 0 0 0 2 PADI1 chr1:17552306 3'AG 17552306 Downstream 58bp 25295 chr1 17552363 17552363 1 + C T BLCA 17552364 + 17552344 17552384 41 CTTGCTGGTGAACTGTGACCGGGACAATCACAGGTCCGCAG CTTGCTGGTGAACTGTGACTGGGACAATCACAGGTCCGCAG < 41bp 0.515505191211836 0.728003219014569 NA NA prediction 0.424996055605465 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17552364 chr1:17552363 nonsynonymous SNV 0.928 3 20 hm7G_associated_SNPs_27792 0 0 0 0 2 PADI1 chr1:17552423 5'GT 17552423 Upstream 61bp 25296 chr20 32664866 32664866 1 + G A rs11538302 32664867 + 32664847 32664887 41 GGGTGATGGAGGTGGCGCCGGCGGCGGCGGCGGTGGTGGTG GGGTGATGGAGGTGGCGCCAGCGGCGGCGGCGGTGGTGGTG < 41bp 0.547998014772587 0.760495439164251 NA NA prediction 0.424994848783327 Functional Gain - RALY ENSG00000125970 CDS Human protein_coding chr20:32664867 chr20:32664866 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_27793 0 0 1 0 1 RALY chr20:32664834 3'AG 32664834 Downstream 33bp 25297 chr16 2100437 2100437 1 + C T COAD 2100438 + 2100418 2100458 41 TGGCCTCAACAATCGCATCCGGATGATAGGGCAGATTTGTG TGGCCTCAACAATCGCATCTGGATGATAGGGCAGATTTGTG < 41bp 0.50080793335223 0.713304572429226 NA NA prediction 0.424993278153992 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2100438 chr16:2100437 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_27794 0 0 1 0 2 TSC2 chr16:2100401 3'AG 2100401 Downstream 37bp 25298 chr16 2100437 2100437 1 + C T COAD 2100438 + 2100418 2100458 41 TGGCCTCAACAATCGCATCCGGATGATAGGGCAGATTTGTG TGGCCTCAACAATCGCATCTGGATGATAGGGCAGATTTGTG < 41bp 0.50080793335223 0.713304572429226 NA NA prediction 0.424993278153992 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2100438 chr16:2100437 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_27794 0 0 1 0 2 TSC2 chr16:2100487 5'GT 2100487 Upstream 51bp 25299 chr19 35786572 35786572 1 + G A UCEC 35786573 + 35786553 35786593 41 GTCCATCTCGGCCTTCGAAGGCACGTGCGTCTCCATCCCCT GTCCATCTCGGCCTTCGAAAGCACGTGCGTCTCCATCCCCT < 41bp 0.567046029773806 0.779541758469173 NA NA prediction 0.424991457390733 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35786573 chr19:35786572 nonsynonymous SNV 0.958 2 20 hm7G_associated_SNPs_27795 0 0 0 0 1 MAG chr19:35786516 3'AG 35786516 Downstream 57bp 25300 chr11 7669672 7669672 1 + G T SARC 7669673 + 7669653 7669693 41 AGCGTGTGTGTGCATGGCTGGAGGACTTTGGCCTGGCTCAG AGCGTGTGTGTGCATGGCTTGAGGACTTTGGCCTGGCTCAG < 41bp 0.364738229570726 0.712493350360283 NA NA prediction 0.424986700720566 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669673 chr11:7669672 synonymous SNV . 0 20 hm7G_associated_SNPs_27798 0 0 1 0 2 PPFIBP2 chr11:7669618 3'AG 7669618 Downstream 55bp 25301 chr11 7669672 7669672 1 + G T SARC 7669673 + 7669653 7669693 41 AGCGTGTGTGTGCATGGCTGGAGGACTTTGGCCTGGCTCAG AGCGTGTGTGTGCATGGCTTGAGGACTTTGGCCTGGCTCAG < 41bp 0.364738229570726 0.712493350360283 NA NA prediction 0.424986700720566 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7669673 chr11:7669672 synonymous SNV . 0 20 hm7G_associated_SNPs_27798 0 0 1 0 2 PPFIBP2 chr11:7669768 5'GT 7669768 Upstream 97bp 25302 chr7 17374604 17374604 1 + C T COAD 17374605 + 17374585 17374625 41 CTGATATGCTTTATTGTGCCGAGTCCCATATCCGAAGTAAG CTGATATGCTTTATTGTGCTGAGTCCCATATCCGAAGTAAG < 41bp 0.503625087757515 0.716114386031253 NA NA prediction 0.424978596547475 Functional Gain - AHR ENSG00000106546 CDS Human protein_coding chr7:17374605 chr7:17374604 synonymous SNV . 0 20 hm7G_associated_SNPs_27799 0 0 1 0 2 AHR chr7:17374511 3'AG 17374511 Downstream 94bp 25303 chr7 17374604 17374604 1 + C T COAD 17374605 + 17374585 17374625 41 CTGATATGCTTTATTGTGCCGAGTCCCATATCCGAAGTAAG CTGATATGCTTTATTGTGCTGAGTCCCATATCCGAAGTAAG < 41bp 0.503625087757515 0.716114386031253 NA NA prediction 0.424978596547475 Functional Gain - AHR ENSG00000106546 CDS Human protein_coding chr7:17374605 chr7:17374604 synonymous SNV . 0 20 hm7G_associated_SNPs_27799 0 0 1 0 2 AHR chr7:17374620 5'GT 17374620 Upstream 17bp 25304 chr5 153789184 153789184 1 + C T STAD 153789185 + 153789165 153789205 41 CTGAATACCGCCACCTCTCCGCTGGGGATGTCGCAGTCCAG CTGAATACCGCCACCTCTCTGCTGGGGATGTCGCAGTCCAG < 41bp 0.507910128423824 0.720399048426741 NA NA prediction 0.424977840005834 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153789185 chr5:153789184 synonymous SNV . 0 20 hm7G_associated_SNPs_27800 0 0 1 0 1 GALNT10 chr5:153789101 3'AG 153789101 Downstream 84bp 25305 chr20 44673705 44673705 1 + G A SKCM 44673706 + 44673686 44673726 41 CTTCTCCACCTGTGGGGCTGGGCTGCAGAGCCTCACGGGGG CTTCTCCACCTGTGGGGCTAGGCTGCAGAGCCTCACGGGGG < 41bp 0.499105890384599 0.712484488359418 NA NA prediction 0.424968976718837 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44673706 chr20:44673705 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_27801 0 0 0 0 1 SLC12A5 chr20:44673779 5'GT 44673779 Upstream 75bp 25306 chr16 28890058 28890058 1 + G A STAD 28890059 + 28890039 28890079 41 TTGGGGTGAGTGAGACCACGGGCCTCACCCCGGACCAAGTT TTGGGGTGAGTGAGACCACAGGCCTCACCCCGGACCAAGTT < 41bp 0.505801729944784 0.718280821497485 NA NA prediction 0.4249581831054 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28890059 chr16:28890058 synonymous SNV . 0 20 hm7G_associated_SNPs_27803 0 0 1 0 1 ATP2A1 chr16:28890110 5'GT 28890110 Upstream 53bp 25307 chr17 7490798 7490798 1 + G A rs16956808 7490799 + 7490779 7490819 41 GGTCTCCTCTCTCTGCAACGGCCTCATCGCCGCCCAGCTGC GGTCTCCTCTCTCTGCAACAGCCTCATCGCCGCCCAGCTGC < 41bp 0.523096979403291 0.735572925972436 NA NA prediction 0.424951893138289 Functional Gain - MPDU1 ENSG00000129255 CDS Human protein_coding chr17:7490799 chr17:7490798 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_27805 2 0 1 0 1 MPDU1 chr17:7490744 3'AG 7490744 Downstream 55bp 25308 chr16 69317969 69317969 1 + C T COAD 69317970 + 69317950 69317990 41 GGTTGGTTCATTCTGGCTCCGGATGTCGATCCCCCTCCCTT GGTTGGTTCATTCTGGCTCTGGATGTCGATCCCCCTCCCTT < 41bp 0.507527773910911 0.719999038557075 NA NA prediction 0.424942529292329 Functional Gain - SNTB2 ENSG00000168807 CDS Human protein_coding chr16:69317970 chr16:69317969 synonymous SNV . 0 20 hm7G_associated_SNPs_27806 0 0 1 0 1 SNTB2 chr16:69317951 3'AG 69317951 Downstream 19bp 25309 chr16 81942153 81942153 1 + C T COAD 81942154 + 81942134 81942174 41 GGATGGCACCTTCCTGGTTCGGGAGAGCGAGACCTTCCCCA GGATGGCACCTTCCTGGTTTGGGAGAGCGAGACCTTCCCCA < 41bp 0.509343542260519 0.721812764516087 NA NA prediction 0.424938444511137 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81942154 chr16:81942153 nonsynonymous SNV 0.848 5 20 hm7G_associated_SNPs_27807 0 0 0 0 1 PLCG2 chr16:81942196 5'GT 81942196 Upstream 44bp 25310 chr11 67225922 67225922 1 + G A LAML 67225923 + 67225903 67225943 41 TGCTCGGGGAGCCGCTGGCGGGTCCTGAGCTGGACGAGATG TGCTCGGGGAGCCGCTGGCAGGTCCTGAGCTGGACGAGATG < 41bp 0.529583249727204 0.742050291847685 NA NA prediction 0.424934084240961 Functional Gain - CABP4 ENSG00000175544 CDS Human protein_coding chr11:67225923 chr11:67225922 synonymous SNV . 0 20 hm7G_associated_SNPs_27808 0 0 0 0 2 CABP4 chr11:67225842 3'AG 67225842 Downstream 81bp 25311 chr11 67225922 67225922 1 + G A LAML 67225923 + 67225903 67225943 41 TGCTCGGGGAGCCGCTGGCGGGTCCTGAGCTGGACGAGATG TGCTCGGGGAGCCGCTGGCAGGTCCTGAGCTGGACGAGATG < 41bp 0.529583249727204 0.742050291847685 NA NA prediction 0.424934084240961 Functional Gain - CABP4 ENSG00000175544 CDS Human protein_coding chr11:67225923 chr11:67225922 synonymous SNV . 0 20 hm7G_associated_SNPs_27808 0 0 0 0 2 CABP4 chr11:67225989 5'GT 67225989 Upstream 68bp 25312 chrX 65412046 65412046 1 + C T SKCM 65412047 + 65412027 65412067 41 CCTGCTCACAGGCAAAGTTCGACAGTACTTCATTGAGGCCC CCTGCTCACAGGCAAAGTTTGACAGTACTTCATTGAGGCCC < 41bp 0.498734589165177 0.712466595733837 NA NA prediction 0.424933191467674 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65412047 chrX:65412046 stopgain 1.000 1 20 hm7G_associated_SNPs_27809 0 0 1 0 2 HEPH chrX:65411972 3'AG 65411972 Downstream 75bp 25313 chrX 65412046 65412046 1 + C T SKCM 65412047 + 65412027 65412067 41 CCTGCTCACAGGCAAAGTTCGACAGTACTTCATTGAGGCCC CCTGCTCACAGGCAAAGTTTGACAGTACTTCATTGAGGCCC < 41bp 0.498734589165177 0.712466595733837 NA NA prediction 0.424933191467674 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65412047 chrX:65412046 stopgain 1.000 1 20 hm7G_associated_SNPs_27809 0 0 1 0 2 HEPH chrX:65412140 5'GT 65412140 Upstream 95bp 25314 chr2 242402790 242402790 1 + C T UCEC 242402791 + 242402771 242402811 41 AAGGAGGACGCCATGCCTGCGACTCTGATGACGCTGCTCTT AAGGAGGACGCCATGCCTGTGACTCTGATGACGCTGCTCTT < 41bp 0.497203486650291 0.712461779631793 NA NA prediction 0.424923559263586 Functional Gain - FARP2 ENSG00000006607 CDS Human protein_coding chr2:242402791 chr2:242402790 nonsynonymous SNV 0.022 1 20 hm7G_associated_SNPs_27811 0 0 0 0 2 FARP2 chr2:242402750 3'AG 242402750 Downstream 41bp 25315 chr2 242402790 242402790 1 + C T UCEC 242402791 + 242402771 242402811 41 AAGGAGGACGCCATGCCTGCGACTCTGATGACGCTGCTCTT AAGGAGGACGCCATGCCTGTGACTCTGATGACGCTGCTCTT < 41bp 0.497203486650291 0.712461779631793 NA NA prediction 0.424923559263586 Functional Gain - FARP2 ENSG00000006607 CDS Human protein_coding chr2:242402791 chr2:242402790 nonsynonymous SNV 0.022 1 20 hm7G_associated_SNPs_27811 0 0 0 0 2 FARP2 chr2:242402883 5'GT 242402883 Upstream 94bp 25316 chr1 6133809 6133809 1 + C T CESC 6133810 + 6133790 6133830 41 CAGGAACATGGGTGACCTTCGGAGGCCAGATCACCGATGAG CAGGAACATGGGTGACCTTTGGAGGCCAGATCACCGATGAG < 41bp 0.515105557287833 0.72755869044857 NA NA prediction 0.424906266321475 Functional Gain - KCNAB2 ENSG00000069424 CDS Human protein_coding chr1:6133810 chr1:6133809 synonymous SNV . 0 20 hm7G_associated_SNPs_27812 0 0 0 0 2 KCNAB2 chr1:6133793 3'AG 6133793 Downstream 17bp 25317 chr1 6133809 6133809 1 + C T CESC 6133810 + 6133790 6133830 41 CAGGAACATGGGTGACCTTCGGAGGCCAGATCACCGATGAG CAGGAACATGGGTGACCTTTGGAGGCCAGATCACCGATGAG < 41bp 0.515105557287833 0.72755869044857 NA NA prediction 0.424906266321475 Functional Gain - KCNAB2 ENSG00000069424 CDS Human protein_coding chr1:6133810 chr1:6133809 synonymous SNV . 0 20 hm7G_associated_SNPs_27812 0 0 0 0 2 KCNAB2 chr1:6133830 5'GT 6133830 Upstream 22bp 25318 chr6 138202258 138202258 1 + G A rs140354477 138202259 + 138202239 138202279 41 CCTCCTGCAAGAACATCCTGGCCTGCCGCAGCGAGGAGCTC CCTCCTGCAAGAACATCCTAGCCTGCCGCAGCGAGGAGCTC < 41bp 0.51167629221433 0.724125188681667 NA NA prediction 0.424897792934674 Functional Gain - TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138202259 chr6:138202258 synonymous SNV . 0 20 hm7G_associated_SNPs_27813 0 0 1 0 1 TNFAIP3 chr6:138202172 3'AG 138202172 Downstream 87bp 25319 chr7 105205777 105205777 1 + C T GBM 105205778 + 105205758 105205798 41 GTGATGTCCCTGTCCAGTTCGGCTTGCCCGTTGCTGCTGAC GTGATGTCCCTGTCCAGTTTGGCTTGCCCGTTGCTGCTGAC < 41bp 0.515483959305735 0.727928613394792 NA NA prediction 0.424889308178115 Functional Gain - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105205778 chr7:105205777 nonsynonymous SNV 0.754 3 20 hm7G_associated_SNPs_27815 1 0 1 0 1 RINT1 chr7:105205724 3'AG 105205724 Downstream 54bp 25320 chr15 67473672 67473672 1 + C T COAD 67473673 + 67473653 67473693 41 GGGGAGACATTCCACGCCTCGCAGCCATCCATGACTGTGGA GGGGAGACATTCCACGCCTTGCAGCCATCCATGACTGTGGA < 41bp 0.495780203208345 0.712442408608831 NA NA prediction 0.424884817217662 Functional Gain - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67473673 chr15:67473672 nonsynonymous SNV 0.934 5 20 hm7G_associated_SNPs_27816 0 0 1 0 1 SMAD3 chr15:67473579 3'AG 67473579 Downstream 94bp 25321 chr3 9726311 9726311 1 + G T LUAD 9726312 + 9726292 9726332 41 TGTATCTCAGGCTGGGATCGGACCCCCCTCTTCATCTCCCT TGTATCTCAGGCTGGGATCTGACCCCCCTCTTCATCTCCCT < 41bp 0.358190753888114 0.712441709444357 NA NA prediction 0.424883418888714 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9726312 chr3:9726311 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27817 0 0 1 2 2 MTMR14 chr3:9726269 3'AG 9726269 Downstream 43bp 25322 chr3 9726311 9726311 1 + G T LUAD 9726312 + 9726292 9726332 41 TGTATCTCAGGCTGGGATCGGACCCCCCTCTTCATCTCCCT TGTATCTCAGGCTGGGATCTGACCCCCCTCTTCATCTCCCT < 41bp 0.358190753888114 0.712441709444357 NA NA prediction 0.424883418888714 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9726312 chr3:9726311 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27817 0 0 1 2 2 MTMR14 chr3:9726354 5'GT 9726354 Upstream 44bp 25323 chr2 232209720 232209720 1 + G T LIHC 232209721 + 232209701 232209741 41 GGGGAAGACAAGGCGGAAGGGGCTGGCTAATGTGCAGTGGA GGGGAAGACAAGGCGGAAGTGGCTGGCTAATGTGCAGTGGA < 41bp 0.358115375233784 0.712441390238091 NA NA prediction 0.424882780476182 Functional Gain - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232209721 chr2:232209720 nonsynonymous SNV 0.132 2 20 hm7G_associated_SNPs_27818 0 0 1 0 1 ARMC9 chr2:232209687 3'AG 232209687 Downstream 34bp 25324 chr19 966831 966831 1 + G A rs115920176 966832 + 966812 966852 41 AGAACTTCCTGGCCATGGCGGCCCAGCTGCCCATGAGCATT AGAACTTCCTGGCCATGGCAGCCCAGCTGCCCATGAGCATT < 41bp 0.520668304770571 0.733108433258842 NA NA prediction 0.424880256976541 Functional Gain - ARID3A ENSG00000116017 CDS Human protein_coding chr19:966832 chr19:966831 synonymous SNV . 0 20 hm7G_associated_SNPs_27819 0 0 1 0 1 ARID3A chr19:966868 5'GT 966868 Upstream 38bp 25325 chr11 94040590 94040590 1 + G A LUAD 94040591 + 94040571 94040611 41 CCTCCTCCATCCCCTGCAGGGAAGAACCGCTGCCCCAAAGG CCTCCTCCATCCCCTGCAGAGAAGAACCGCTGCCCCAAAGG < 41bp 0.525035277355199 0.737474567874917 NA NA prediction 0.424878581039438 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94040591 chr11:94040590 nonsynonymous SNV 0.165 1 20 hm7G_associated_SNPs_27820 0 0 0 0 1 IZUMO1R chr11:94040590 3'AG 94040590 Downstream 1bp 25326 chr1 203025622 203025622 1 + G T COAD 203025623 + 203025603 203025643 41 GCCACCCAGCCCTGAGCCAGGAAGAAGGCAAGAGGTAAGTA GCCACCCAGCCCTGAGCCATGAAGAAGGCAAGAGGTAAGTA < 41bp 0.696270173444823 0.908703990433646 NA NA prediction 0.424867633977647 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203025623 chr1:203025622 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_27822 0 0 1 0 1 PPFIA4 chr1:203025636 5'GT 203025636 Upstream 15bp 25327 chr6 17602861 17602861 1 + G T GBM 17602862 + 17602842 17602882 41 CCTTGGCCCACAGATTTATGGCAGAGATGGTGGATTTCTTT CCTTGGCCCACAGATTTATTGCAGAGATGGTGGATTTCTTT < 41bp 0.685188197543853 0.897621461144868 NA NA prediction 0.42486652720203 Functional Gain - FAM8A1 ENSG00000137414 CDS Human protein_coding chr6:17602862 chr6:17602861 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_27823 0 0 1 0 2 FAM8A1 chr6:17602821 3'AG 17602821 Downstream 41bp 25328 chr6 17602861 17602861 1 + G T GBM 17602862 + 17602842 17602882 41 CCTTGGCCCACAGATTTATGGCAGAGATGGTGGATTTCTTT CCTTGGCCCACAGATTTATTGCAGAGATGGTGGATTTCTTT < 41bp 0.685188197543853 0.897621461144868 NA NA prediction 0.42486652720203 Functional Gain - FAM8A1 ENSG00000137414 CDS Human protein_coding chr6:17602862 chr6:17602861 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_27823 0 0 1 0 2 FAM8A1 chr6:17602941 5'GT 17602941 Upstream 81bp 25329 chr20 2380966 2380966 1 + G A LUAD 2380967 + 2380947 2380987 41 TGCAGTCCTCAGGTGCTTGGGGATAGCCACACGGGTCGTGT TGCAGTCCTCAGGTGCTTGAGGATAGCCACACGGGTCGTGT < 41bp 0.540092388046897 0.75252559927757 NA NA prediction 0.424866422461345 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2380967 chr20:2380966 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_27824 0 0 0 0 1 TGM6 chr20:2380952 3'AG 2380952 Downstream 15bp 25330 chr1 158047860 158047860 1 + C T COAD 158047861 + 158047841 158047881 41 CAGATGCTGAGCTCTCTGACGACGCCTCTTACGAGTGCCAG CAGATGCTGAGCTCTCTGATGACGCCTCTTACGAGTGCCAG < 41bp 0.496534243883167 0.712431897820329 NA NA prediction 0.424863795640658 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158047861 chr1:158047860 synonymous SNV . 0 20 hm7G_associated_SNPs_27825 0 0 0 0 2 KIRREL chr1:158047781 3'AG 158047781 Downstream 80bp 25331 chr1 158047860 158047860 1 + C T COAD 158047861 + 158047841 158047881 41 CAGATGCTGAGCTCTCTGACGACGCCTCTTACGAGTGCCAG CAGATGCTGAGCTCTCTGATGACGCCTCTTACGAGTGCCAG < 41bp 0.496534243883167 0.712431897820329 NA NA prediction 0.424863795640658 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158047861 chr1:158047860 synonymous SNV . 0 20 hm7G_associated_SNPs_27825 0 0 0 0 2 KIRREL chr1:158047930 5'GT 158047930 Upstream 71bp 25332 chr15 63866278 63866278 1 + C T rs61751107 63866279 + 63866259 63866299 41 CTGTTGTCACGGCTATATTCGGAGGCATTCTCCAAAATGAG CTGTTGTCACGGCTATATTTGGAGGCATTCTCCAAAATGAG < 41bp 0.515929138067233 0.728360853439322 NA NA prediction 0.424863430744178 Functional Gain - USP3 ENSG00000140455 CDS Human protein_coding chr15:63866279 chr15:63866278 synonymous SNV . 0 20 hm7G_associated_SNPs_27826 0 0 1 0 2 USP3 chr15:63866245 3'AG 63866245 Downstream 34bp 25333 chr15 63866278 63866278 1 + C T rs61751107 63866279 + 63866259 63866299 41 CTGTTGTCACGGCTATATTCGGAGGCATTCTCCAAAATGAG CTGTTGTCACGGCTATATTTGGAGGCATTCTCCAAAATGAG < 41bp 0.515929138067233 0.728360853439322 NA NA prediction 0.424863430744178 Functional Gain - USP3 ENSG00000140455 CDS Human protein_coding chr15:63866279 chr15:63866278 synonymous SNV . 0 20 hm7G_associated_SNPs_27826 0 0 1 0 2 USP3 chr15:63866351 5'GT 63866351 Upstream 74bp 25334 chr20 36789862 36789862 1 - G A ESCA 36789861 - 36789841 36789881 41 ACTTTGAGGGCCGCAACTACGAGGCCAGTGTAGACAGTCTC ACTTTGAGGGCCGCAACTATGAGGCCAGTGTAGACAGTCTC < 41bp 0.516076249423571 0.728505051368376 NA NA prediction 0.424857603889609 Functional Gain - TGM2 ENSG00000198959 CDS Human protein_coding chr20:36789861 chr20:36789862 synonymous SNV . 0 20 hm7G_associated_SNPs_27828 0 0 1 0 2 TGM2 chr20:36789822 5'GT 36789822 Upstream 41bp 25335 chr20 36789862 36789862 1 - G A ESCA 36789861 - 36789841 36789881 41 ACTTTGAGGGCCGCAACTACGAGGCCAGTGTAGACAGTCTC ACTTTGAGGGCCGCAACTATGAGGCCAGTGTAGACAGTCTC < 41bp 0.516076249423571 0.728505051368376 NA NA prediction 0.424857603889609 Functional Gain - TGM2 ENSG00000198959 CDS Human protein_coding chr20:36789861 chr20:36789862 synonymous SNV . 0 20 hm7G_associated_SNPs_27828 0 0 1 0 2 TGM2 chr20:36789829 5'GT 36789829 Upstream 34bp 25336 chr17 42394005 42394005 1 + G A COAD 42394006 + 42393986 42394026 41 GACACAGCTTCATGAGCACGGAGCCGCTGTCAGCTGAAGCC GACACAGCTTCATGAGCACAGAGCCGCTGTCAGCTGAAGCC < 41bp 0.507346715671702 0.719773633818134 NA NA prediction 0.424853836292863 Functional Gain - RUNDC3A ENSG00000108309 CDS Human protein_coding chr17:42394006 chr17:42394005 synonymous SNV . 0 20 hm7G_associated_SNPs_27830 0 0 0 0 2 RUNDC3A chr17:42393987 3'AG 42393987 Downstream 19bp 25337 chr17 42394005 42394005 1 + G A COAD 42394006 + 42393986 42394026 41 GACACAGCTTCATGAGCACGGAGCCGCTGTCAGCTGAAGCC GACACAGCTTCATGAGCACAGAGCCGCTGTCAGCTGAAGCC < 41bp 0.507346715671702 0.719773633818134 NA NA prediction 0.424853836292863 Functional Gain - RUNDC3A ENSG00000108309 CDS Human protein_coding chr17:42394006 chr17:42394005 synonymous SNV . 0 20 hm7G_associated_SNPs_27830 0 0 0 0 2 RUNDC3A chr17:42394093 5'GT 42394093 Upstream 89bp 25338 chr20 33068487 33068487 1 + G T UCEC 33068488 + 33068468 33068508 41 ACAAACCAGTTGGACTCAAGGATTTAGAATCTATTGATCCA ACAAACCAGTTGGACTCAATGATTTAGAATCTATTGATCCA < 41bp 0.389250655039679 0.712420714264578 NA NA prediction 0.424841428529155 Functional Gain - ITCH ENSG00000078747 CDS Human protein_coding chr20:33068488 chr20:33068487 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27832 0 0 1 0 2 ITCH chr20:33068404 3'AG 33068404 Downstream 84bp 25339 chr20 33068487 33068487 1 + G T UCEC 33068488 + 33068468 33068508 41 ACAAACCAGTTGGACTCAAGGATTTAGAATCTATTGATCCA ACAAACCAGTTGGACTCAATGATTTAGAATCTATTGATCCA < 41bp 0.389250655039679 0.712420714264578 NA NA prediction 0.424841428529155 Functional Gain - ITCH ENSG00000078747 CDS Human protein_coding chr20:33068488 chr20:33068487 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27832 0 0 1 0 2 ITCH chr20:33068537 5'GT 33068537 Upstream 51bp 25340 chr4 2695327 2695327 1 + G A STAD 2695328 + 2695308 2695348 41 TGCAGGTGACGTGTTTCATGGCATCAGCAAGGAGGACCACA TGCAGGTGACGTGTTTCATAGCATCAGCAAGGAGGACCACA < 41bp 0.49879644115788 0.712420681240981 NA NA prediction 0.424841362481961 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2695328 chr4:2695327 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_27833 0 0 0 0 1 FAM193A chr4:2695313 3'AG 2695313 Downstream 15bp 25341 chr19 10404725 10404725 1 + G T STAD 10404726 + 10404706 10404746 41 TGTTTCCCAGATGGCCCCAGGTTTGAGGAGCCGAGCTGCCC TGTTTCCCAGATGGCCCCATGTTTGAGGAGCCGAGCTGCCC < 41bp 0.694279858502345 0.906697424003285 NA NA prediction 0.424835131001881 Functional Gain - ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10404726 chr19:10404725 nonsynonymous SNV 0.639 1 20 hm7G_associated_SNPs_27834 0 0 1 0 1 ICAM5 chr19:10404716 3'AG 10404716 Downstream 10bp 25342 chr16 72139996 72139996 1 + G A UCEC 72139997 + 72139977 72140017 41 CAGGGCGAGCCGGCAGGACGGGCCCAGGTCAGTGTTTCAGG CAGGGCGAGCCGGCAGGACAGGCCCAGGTCAGTGTTTCAGG < 41bp 0.534320864643172 0.746736686273019 NA NA prediction 0.424831643259696 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139997 chr16:72139996 synonymous SNV . 0 20 hm7G_associated_SNPs_27835 0 0 1 0 2 DHX38 chr16:72139904 3'AG 72139904 Downstream 93bp 25343 chr16 72139996 72139996 1 + G A UCEC 72139997 + 72139977 72140017 41 CAGGGCGAGCCGGCAGGACGGGCCCAGGTCAGTGTTTCAGG CAGGGCGAGCCGGCAGGACAGGCCCAGGTCAGTGTTTCAGG < 41bp 0.534320864643172 0.746736686273019 NA NA prediction 0.424831643259696 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72139997 chr16:72139996 synonymous SNV . 0 20 hm7G_associated_SNPs_27835 0 0 1 0 2 DHX38 chr16:72140016 5'GT 72140016 Upstream 21bp 25344 chr1 57158050 57158050 1 + G T STAD 57158051 + 57158031 57158071 41 GTTGAAGAGATGGAAGCCAGGCGGCTCTTTCAGCAGATTCT GTTGAAGAGATGGAAGCCATGCGGCTCTTTCAGCAGATTCT < 41bp 0.384133050169697 0.712411618096733 NA NA prediction 0.424823236193467 Functional Gain - PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57158051 chr1:57158050 nonsynonymous SNV 0.940 4 20 hm7G_associated_SNPs_27838 0 0 1 0 1 PRKAA2 chr1:57158031 3'AG 57158031 Downstream 20bp 25345 chr16 28892328 28892328 1 + G A LUSC 28892329 + 28892309 28892349 41 TCATTGCCAATGCCATCGTGGGGGTTTGGCAGGTTAGCGTT TCATTGCCAATGCCATCGTAGGGGTTTGGCAGGTTAGCGTT < 41bp 0.509293734667739 0.721704218141839 NA NA prediction 0.424820966948201 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28892329 chr16:28892328 synonymous SNV . 0 20 hm7G_associated_SNPs_27840 0 0 1 0 2 ATP2A1 chr16:28892236 3'AG 28892236 Downstream 93bp 25346 chr16 28892328 28892328 1 + G A LUSC 28892329 + 28892309 28892349 41 TCATTGCCAATGCCATCGTGGGGGTTTGGCAGGTTAGCGTT TCATTGCCAATGCCATCGTAGGGGTTTGGCAGGTTAGCGTT < 41bp 0.509293734667739 0.721704218141839 NA NA prediction 0.424820966948201 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28892329 chr16:28892328 synonymous SNV . 0 20 hm7G_associated_SNPs_27840 0 0 1 0 2 ATP2A1 chr16:28892340 5'GT 28892340 Upstream 13bp 25347 chr8 21955258 21955258 1 + G A UCEC 21955259 + 21955239 21955279 41 ACTTGGTGGGACTGCTTCCGGATCCGTTACAGAAAAGGAGG ACTTGGTGGGACTGCTTCCAGATCCGTTACAGAAAAGGAGG < 41bp 0.513724211770774 0.726128988583513 NA NA prediction 0.424809553625477 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21955259 chr8:21955258 nonsynonymous SNV 0.033 4 20 hm7G_associated_SNPs_27841 0 0 1 1 2 FAM160B2 chr8:21955228 3'AG 21955228 Downstream 31bp 25348 chr8 21955258 21955258 1 + G A UCEC 21955259 + 21955239 21955279 41 ACTTGGTGGGACTGCTTCCGGATCCGTTACAGAAAAGGAGG ACTTGGTGGGACTGCTTCCAGATCCGTTACAGAAAAGGAGG < 41bp 0.513724211770774 0.726128988583513 NA NA prediction 0.424809553625477 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21955259 chr8:21955258 nonsynonymous SNV 0.033 4 20 hm7G_associated_SNPs_27841 0 0 1 1 2 FAM160B2 chr8:21955350 5'GT 21955350 Upstream 93bp 25349 chr11 61541493 61541493 1 + C T COAD 61541494 + 61541474 61541514 41 GCTTCAACTTTTCGGTGGGCGACGACGCCTTTGTGTGCCAG GCTTCAACTTTTCGGTGGGTGACGACGCCTTTGTGTGCCAG < 41bp 0.513213211761311 0.725615974129614 NA NA prediction 0.424805524736605 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61541494 chr11:61541493 synonymous SNV . 0 20 hm7G_associated_SNPs_27843 0 0 1 0 1 MYRF chr11:61541439 3'AG 61541439 Downstream 55bp 25350 chr19 45975850 45975850 1 + G T LUSC 45975851 + 45975831 45975871 41 AAAAAGCAGAGCTGGAGTCGGAGATCGCCGAGCTCCAAAAG AAAAAGCAGAGCTGGAGTCTGAGATCGCCGAGCTCCAAAAG < 41bp 0.682072044425612 0.894471796192391 NA NA prediction 0.424799503533559 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45975851 chr19:45975850 synonymous SNV . 0 20 hm7G_associated_SNPs_27844 0 0 0 0 1 FOSB chr19:45975809 3'AG 45975809 Downstream 42bp 25351 chr7 129122702 129122702 1 + C T UCEC 129122703 + 129122683 129122723 41 ATGCTGGTAGTGTTTAAATCGGCACCAATCTTAAAGCGGGC ATGCTGGTAGTGTTTAAATTGGCACCAATCTTAAAGCGGGC < 41bp 0.50977010067887 0.722164132563763 NA NA prediction 0.424788063769785 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129122703 chr7:129122702 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_27846 0 0 0 0 1 STRIP2 chr7:129122683 3'AG 129122683 Downstream 20bp 25352 chr22 20079466 20079466 1 + C T STAD 20079467 + 20079447 20079487 41 GCAGCGTGTCCTCAAGGTCCGCCCTGTCTATAATTTCTTTG GCAGCGTGTCCTCAAGGTCTGCCCTGTCTATAATTTCTTTG < 41bp 0.498802360277506 0.712387001500272 NA NA prediction 0.424774003000544 Functional Gain - DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079467 chr22:20079466 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27847 0 0 1 0 1 DGCR8 chr22:20079493 5'GT 20079493 Upstream 28bp 25353 chr12 58002346 58002346 1 + G T UCEC 58002347 + 58002327 58002367 41 CGGTATCCTGGCACCACACGGGTGGCCTACCTCCCGGACTG CGGTATCCTGGCACCACACTGGTGGCCTACCTCCCGGACTG < 41bp 0.358613953766536 0.712376158620078 NA NA prediction 0.424752317240157 Functional Gain - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002347 chr12:58002346 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_27851 0 0 1 0 1 DTX3 chr12:58002303 3'AG 58002303 Downstream 44bp 25354 chr17 48738348 48738348 1 + C T rs201562834 48738349 + 48738329 48738369 41 CGAGGTGCTGCTGGGTGCCCGGCCCAGGCCCCGGAAGCCCT CGAGGTGCTGCTGGGTGCCTGGCCCAGGCCCCGGAAGCCCT < 41bp 0.499032256584221 0.712374761436845 NA NA prediction 0.424749522873691 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48738349 chr17:48738348 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_27852 0 0 1 0 1 ABCC3 chr17:48738284 3'AG 48738284 Downstream 65bp 25355 chr8 145134875 145134875 1 + G A BLCA 145134876 + 145134856 145134896 41 CCCGGGCTCGAGCCCTGCCGGACAGGGCCCTAGTGAACTGT CCCGGGCTCGAGCCCTGCCAGACAGGGCCCTAGTGAACTGT < 41bp 0.543680558050102 0.756055252809679 NA NA prediction 0.424749389519153 Functional Gain - EXOSC4 ENSG00000178896 CDS Human protein_coding chr8:145134876 chr8:145134875 synonymous SNV . 0 20 hm7G_associated_SNPs_27853 0 0 1 0 1 EXOSC4 chr8:145134846 3'AG 145134846 Downstream 30bp 25356 chr16 67000185 67000185 1 + G A UCEC 67000186 + 67000166 67000206 41 CCTGCAGCTCCAGCTCCCCGGCTGAGATGGTGCAGTGCCTT CCTGCAGCTCCAGCTCCCCAGCTGAGATGGTGCAGTGCCTT < 41bp 0.562719148945534 0.775088426886778 NA NA prediction 0.424738555882487 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67000186 chr16:67000185 synonymous SNV . 0 20 hm7G_associated_SNPs_27854 0 0 0 0 2 CES3 chr16:67000147 3'AG 67000147 Downstream 39bp 25357 chr16 67000185 67000185 1 + G A UCEC 67000186 + 67000166 67000206 41 CCTGCAGCTCCAGCTCCCCGGCTGAGATGGTGCAGTGCCTT CCTGCAGCTCCAGCTCCCCAGCTGAGATGGTGCAGTGCCTT < 41bp 0.562719148945534 0.775088426886778 NA NA prediction 0.424738555882487 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67000186 chr16:67000185 synonymous SNV . 0 20 hm7G_associated_SNPs_27854 0 0 0 0 2 CES3 chr16:67000248 5'GT 67000248 Upstream 64bp 25358 chr9 82337412 82337412 1 + G T HNSC 82337413 + 82337393 82337433 41 GGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGA GGAGAGTGGCTTGCAGTGGTGATGGAGAACAGCAATGTGGA < 41bp 0.687664627045904 0.900031159665246 NA NA prediction 0.424733065238684 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82337413 chr9:82337412 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27856 0 0 1 0 1 TLE4 chr9:82337366 3'AG 82337366 Downstream 47bp 25359 chr12 122614630 122614630 1 + C T STAD 122614631 + 122614611 122614651 41 ACACTTTCTTCACACCAGCCGGTGGCCTGGCCCAATCCCCG ACACTTTCTTCACACCAGCTGGTGGCCTGGCCCAATCCCCG < 41bp 0.510277541615346 0.72264164581215 NA NA prediction 0.424728208393608 Functional Gain - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122614631 chr12:122614630 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_27857 0 0 1 0 1 MLXIP chr12:122614659 5'GT 122614659 Upstream 30bp 25360 chr2 206562374 206562374 1 + C T UCEC 206562375 + 206562355 206562395 41 ACTGCGAGTGGATTGTTTACGCCCCCGAACCCAACCAGAAG ACTGCGAGTGGATTGTTTATGCCCCCGAACCCAACCAGAAG < 41bp 0.501295317403955 0.713658355190143 NA NA prediction 0.424726075572377 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206562375 chr2:206562374 synonymous SNV . 0 20 hm7G_associated_SNPs_27859 0 0 0 0 1 NRP2 chr2:206562445 5'GT 206562445 Upstream 72bp 25361 chr15 44149179 44149179 1 + C T LUSC 44149180 + 44149160 44149200 41 GAAGTAGCTTTTCCTCCTTCGACTTCTTGGCAGAAGATGCC GAAGTAGCTTTTCCTCCTTTGACTTCTTGGCAGAAGATGCC < 41bp 0.502590029003579 0.714952167697891 NA NA prediction 0.424724277388624 Functional Gain - WDR76 ENSG00000092470 CDS Human protein_coding chr15:44149180 chr15:44149179 synonymous SNV . 0 20 hm7G_associated_SNPs_27860 0 0 1 0 1 WDR76 chr15:44149144 3'AG 44149144 Downstream 36bp 25362 chr2 10091938 10091938 1 + G T LIHC 10091939 + 10091919 10091959 41 CCCGAAAGTCCAGTTCTGCGGCCCGGCAGCGGCGAGCGGGC CCCGAAAGTCCAGTTCTGCTGCCCGGCAGCGGCGAGCGGGC < 41bp 0.67575577467223 0.8881121583452 NA NA prediction 0.42471276734594 Functional Gain - GRHL1 ENSG00000134317 UTR5 Human protein_coding chr2:10091939 chr2:10091938 . . 0 20 hm7G_associated_SNPs_27862 0 0 0 0 1 GRHL1 chr2:10091982 5'GT 10091982 Upstream 45bp 25363 chr11 61502347 61502347 1 + G T LUSC 61502348 + 61502328 61502368 41 CTGTGTCCTGCGAGGCCGCGGTTCGCCCCTGGAGTCACCAT CTGTGTCCTGCGAGGCCGCTGTTCGCCCCTGGAGTCACCAT < 41bp 0.362851141299672 0.712356239240876 NA NA prediction 0.424712478481752 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61502348 chr11:61502347 nonsynonymous SNV 0.845 2 20 hm7G_associated_SNPs_27863 0 0 0 0 1 DAGLA chr11:61502321 3'AG 61502321 Downstream 27bp 25364 chr5 147795508 147795508 1 + C T COAD 147795509 + 147795489 147795529 41 AGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAG AGACCACTCAAGATGGACTTGATTGGTTGATATCAACCTAG < 41bp 0.507896284123042 0.72024721726049 NA NA prediction 0.424701866274896 Functional Gain - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147795509 chr5:147795508 stopgain 0.936 1 20 hm7G_associated_SNPs_27865 0 0 0 0 1 FBXO38 chr5:147795491 3'AG 147795491 Downstream 18bp 25365 chr1 906524 906524 1 + G A LGG 906525 + 906505 906545 41 CGGCTGCGGACGGCGTCAGGGCACGAACCCGGCGGCAGTGC CGGCTGCGGACGGCGTCAGAGCACGAACCCGGCGGCAGTGC < 41bp 0.476474456412408 0.712346348396952 NA NA prediction 0.424692696793904 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906525 chr1:906524 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_27866 0 0 0 0 3 PLEKHN1 chr1:906457 3'AG 906457 Downstream 68bp 25366 chr1 906524 906524 1 + G A LGG 906525 + 906505 906545 41 CGGCTGCGGACGGCGTCAGGGCACGAACCCGGCGGCAGTGC CGGCTGCGGACGGCGTCAGAGCACGAACCCGGCGGCAGTGC < 41bp 0.476474456412408 0.712346348396952 NA NA prediction 0.424692696793904 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906525 chr1:906524 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_27866 0 0 0 0 3 PLEKHN1 chr1:906493 3'AG 906493 Downstream 32bp 25367 chr1 906524 906524 1 + G A LGG 906525 + 906505 906545 41 CGGCTGCGGACGGCGTCAGGGCACGAACCCGGCGGCAGTGC CGGCTGCGGACGGCGTCAGAGCACGAACCCGGCGGCAGTGC < 41bp 0.476474456412408 0.712346348396952 NA NA prediction 0.424692696793904 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906525 chr1:906524 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_27866 0 0 0 0 3 PLEKHN1 chr1:906588 5'GT 906588 Upstream 65bp 25368 chr16 31336602 31336602 1 + G T BRCA 31336603 + 31336583 31336623 41 GCCTGGACTGCCTCGTGGTGGGTGGGCCCCGGGAGTTCAAC GCCTGGACTGCCTCGTGGTTGGTGGGCCCCGGGAGTTCAAC < 41bp 0.355223409874341 0.712344559663506 NA NA prediction 0.424689119327012 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31336603 chr16:31336602 synonymous SNV . 0 20 hm7G_associated_SNPs_27867 0 0 0 0 1 ITGAM chr16:31336584 3'AG 31336584 Downstream 19bp 25369 chr20 2998494 2998494 1 + C T SARC 2998495 + 2998475 2998515 41 AACGGTGAATGATTTCTGGCGGATGATCTGGGAACAAAACA AACGGTGAATGATTTCTGGTGGATGATCTGGGAACAAAACA < 41bp 0.517533114103998 0.72987447134021 NA NA prediction 0.424682714472423 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:2998495 chr20:2998494 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27869 0 0 1 0 2 PTPRA chr20:2998462 3'AG 2998462 Downstream 33bp 25370 chr20 2998494 2998494 1 + C T SARC 2998495 + 2998475 2998515 41 AACGGTGAATGATTTCTGGCGGATGATCTGGGAACAAAACA AACGGTGAATGATTTCTGGTGGATGATCTGGGAACAAAACA < 41bp 0.517533114103998 0.72987447134021 NA NA prediction 0.424682714472423 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:2998495 chr20:2998494 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27869 0 0 1 0 2 PTPRA chr20:2998559 5'GT 2998559 Upstream 66bp 25371 chr1 12251958 12251958 1 + G A HNSC 12251959 + 12251939 12251979 41 CGCTGCGCAAGTGCCGCCCGGGCTTCGGCGTGGCCAGACCA CGCTGCGCAAGTGCCGCCCAGGCTTCGGCGTGGCCAGACCA < 41bp 0.477450473567197 0.71234048789238 NA NA prediction 0.42468097578476 Functional Gain - TNFRSF1B ENSG00000028137 CDS Human protein_coding chr1:12251959 chr1:12251958 synonymous SNV . 0 20 hm7G_associated_SNPs_27870 0 0 0 0 1 TNFRSF1B chr1:12251980 5'GT 12251980 Upstream 23bp 25372 chr16 24919406 24919406 1 + C T COAD 24919407 + 24919387 24919427 41 TACCTGCAGCCGCCTGTGGCGGTGGTCTTCATCATGGGATG TACCTGCAGCCGCCTGTGGTGGTGGTCTTCATCATGGGATG < 41bp 0.504255862177072 0.716582470782985 NA NA prediction 0.424653217211826 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24919407 chr16:24919406 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_27871 0 0 0 0 1 SLC5A11 chr16:24919452 5'GT 24919452 Upstream 47bp 25373 chr17 73729694 73729694 1 + C T rs563096686 73729695 + 73729675 73729715 41 GCGGGCACTGTGTGTGCTACGGCGAAGGCCGCTACGAGGGT GCGGGCACTGTGTGTGCTATGGCGAAGGCCGCTACGAGGGT < 41bp 0.507400826043742 0.71972518442802 NA NA prediction 0.424648716768556 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73729695 chr17:73729694 synonymous SNV . 0 20 hm7G_associated_SNPs_27872 0 0 0 0 1 ITGB4 chr17:73729773 5'GT 73729773 Upstream 80bp 25374 chr15 28929371 28929371 1 + G T LGG 28929372 + 28929352 28929392 41 TTCTCATTGGGAAGGAAAAGGCACACGCTGCGGTGGTCTTG TTCTCATTGGGAAGGAAAATGCACACGCTGCGGTGGTCTTG < 41bp 0.661121247973155 0.873444927105786 NA NA prediction 0.424647358265264 Functional Gain - HERC2P9 ENSG00000206149 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:28929372 chr15:28929371 . . 0 20 hm7G_associated_SNPs_27873 0 0 1 0 1 HERC2P9 chr15:28929275 3'AG 28929275 Downstream 97bp 25375 chr22 25010755 25010755 1 + G A BLCA 25010756 + 25010736 25010776 41 ATGGCAGGGATGCACTGCGGGACGGTGGCTCTGCGGTGGAT ATGGCAGGGATGCACTGCGAGACGGTGGCTCTGCGGTGGAT < 41bp 0.498275985618561 0.71231378024888 NA NA prediction 0.42462756049776 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25010756 chr22:25010755 synonymous SNV . 0 20 hm7G_associated_SNPs_27877 0 0 1 0 1 GGT1 chr22:25010743 3'AG 25010743 Downstream 13bp 25376 chr2 95947716 95947716 1 + C T SKCM 95947717 + 95947697 95947737 41 CCCCCGTCCATGAACCTGTCGCAACTTCTTGGCCTGAGGAA CCCCCGTCCATGAACCTGTTGCAACTTCTTGGCCTGAGGAA < 41bp 0.495172424486646 0.712312069576183 NA NA prediction 0.424624139152366 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95947717 chr2:95947716 nonsynonymous SNV 0.073 2 20 hm7G_associated_SNPs_27878 0 0 0 0 2 PROM2 chr2:95947673 3'AG 95947673 Downstream 44bp 25377 chr2 95947716 95947716 1 + C T SKCM 95947717 + 95947697 95947737 41 CCCCCGTCCATGAACCTGTCGCAACTTCTTGGCCTGAGGAA CCCCCGTCCATGAACCTGTTGCAACTTCTTGGCCTGAGGAA < 41bp 0.495172424486646 0.712312069576183 NA NA prediction 0.424624139152366 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95947717 chr2:95947716 nonsynonymous SNV 0.073 2 20 hm7G_associated_SNPs_27878 0 0 0 0 2 PROM2 chr2:95947764 5'GT 95947764 Upstream 49bp 25378 chr10 26506573 26506573 1 + G A UCEC 26506574 + 26506554 26506594 41 AAGTGGCTCAGAAGTTCACGGGCGGCATCGGAAACAAACTG AAGTGGCTCAGAAGTTCACAGGCGGCATCGGAAACAAACTG < 41bp 0.494048985964876 0.712308466811168 NA NA prediction 0.424616933622335 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26506574 chr10:26506573 synonymous SNV . 0 20 hm7G_associated_SNPs_27880 0 0 0 0 2 GAD2 chr10:26506539 3'AG 26506539 Downstream 35bp 25379 chr10 26506573 26506573 1 + G A UCEC 26506574 + 26506554 26506594 41 AAGTGGCTCAGAAGTTCACGGGCGGCATCGGAAACAAACTG AAGTGGCTCAGAAGTTCACAGGCGGCATCGGAAACAAACTG < 41bp 0.494048985964876 0.712308466811168 NA NA prediction 0.424616933622335 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26506574 chr10:26506573 synonymous SNV . 0 20 hm7G_associated_SNPs_27880 0 0 0 0 2 GAD2 chr10:26506598 5'GT 26506598 Upstream 26bp 25380 chr9 37305609 37305609 1 + C T rs137880533 37305610 + 37305590 37305630 41 CCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAG CCTGTCCAGCCCCCCTTTGTGAATACTGTCCTGTGCCTAAG < 41bp 0.495241733861536 0.712306472582369 NA NA prediction 0.424612945164738 Functional Gain - ZCCHC7 ENSG00000147905 CDS Human protein_coding chr9:37305610 chr9:37305609 synonymous SNV . 0 20 hm7G_associated_SNPs_27882 0 0 1 0 1 ZCCHC7 chr9:37305541 3'AG 37305541 Downstream 69bp 25381 chr17 79205671 79205671 1 - C A UCEC 79205670 - 79205650 79205690 41 AGCCATTCAGGGGCCAGCCGGGAGCCGGGTGACCTGGCAGA AGCCATTCAGGGGCCAGCCTGGAGCCGGGTGACCTGGCAGA < 41bp 0.700747350413791 0.913051356817735 NA NA prediction 0.424608012807889 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79205670 chr17:79205671 nonsynonymous SNV 0.244 2 20 hm7G_associated_SNPs_27883 0 0 1 0 1 TEPSIN chr17:79205647 5'GT 79205647 Upstream 25bp 25382 chr20 2582894 2582894 1 + C T ACC 2582895 + 2582875 2582915 41 CATTTACTTTGTGGTTAAGCGATCTCAGCAATTCTCCAAAA CATTTACTTTGTGGTTAAGTGATCTCAGCAATTCTCCAAAA < 41bp 0.501960279998252 0.714263756984256 NA NA prediction 0.424606953972008 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2582895 chr20:2582894 stopgain 0.997 1 20 hm7G_associated_SNPs_27884 0 0 0 0 1 TMC2 chr20:2582947 5'GT 2582947 Upstream 54bp 25383 chr8 99039681 99039681 1 + C T HNSC 99039682 + 99039662 99039702 41 TTGACCTGGTCTTTGTGATCGATGGATCCAAGAGTCTTGGA TTGACCTGGTCTTTGTGATTGATGGATCCAAGAGTCTTGGA < 41bp 0.502848997858852 0.715144667781537 NA NA prediction 0.424591339845371 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99039682 chr8:99039681 synonymous SNV . 0 20 hm7G_associated_SNPs_27888 0 0 0 0 1 MATN2 chr8:99039644 3'AG 99039644 Downstream 38bp 25384 chr21 47419113 47419113 1 + G A UCEC 47419114 + 47419094 47419134 41 AAAGGAGCAAAGGGGTACCGGGGTCCCGAGGGCCCCCAGGT AAAGGAGCAAAGGGGTACCAGGGTCCCGAGGGCCCCCAGGT < 41bp 0.549912171099845 0.762205259011114 NA NA prediction 0.424586175822538 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419114 chr21:47419113 nonsynonymous SNV 0.646 4 20 hm7G_associated_SNPs_27891 0 0 0 0 2 COL6A1 chr21:47419067 3'AG 47419067 Downstream 47bp 25385 chr21 47419113 47419113 1 + G A UCEC 47419114 + 47419094 47419134 41 AAAGGAGCAAAGGGGTACCGGGGTCCCGAGGGCCCCCAGGT AAAGGAGCAAAGGGGTACCAGGGTCCCGAGGGCCCCCAGGT < 41bp 0.549912171099845 0.762205259011114 NA NA prediction 0.424586175822538 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47419114 chr21:47419113 nonsynonymous SNV 0.646 4 20 hm7G_associated_SNPs_27891 0 0 0 0 2 COL6A1 chr21:47419132 5'GT 47419132 Upstream 20bp 25386 chr6 26385290 26385290 1 + G T CESC 26385291 + 26385271 26385311 41 TCCCATCCTGGCCATGGTGGGAGAAAACACTACATTACGCT TCCCATCCTGGCCATGGTGTGAGAAAACACTACATTACGCT < 41bp 0.373371037175695 0.712290743252048 NA NA prediction 0.424581486504096 Functional Gain - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26385291 chr6:26385290 stopgain 0.991 1 20 hm7G_associated_SNPs_27892 0 0 0 0 1 BTN2A2 chr6:26385243 3'AG 26385243 Downstream 48bp 25387 chrX 69639576 69639576 1 + C T rs61747653 69639577 + 69639557 69639597 41 TCAAACTGGAGGATCCTACCGAGGTGACCCCAGGATTGAGC TCAAACTGGAGGATCCTACTGAGGTGACCCCAGGATTGAGC < 41bp 0.511744013780435 0.724030034325421 NA NA prediction 0.424572041089972 Functional Gain - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639577 chrX:69639576 synonymous SNV . 0 20 hm7G_associated_SNPs_27895 0 0 0 0 2 KIF4A chrX:69639511 3'AG 69639511 Downstream 66bp 25388 chrX 69639576 69639576 1 + C T rs61747653 69639577 + 69639557 69639597 41 TCAAACTGGAGGATCCTACCGAGGTGACCCCAGGATTGAGC TCAAACTGGAGGATCCTACTGAGGTGACCCCAGGATTGAGC < 41bp 0.511744013780435 0.724030034325421 NA NA prediction 0.424572041089972 Functional Gain - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69639577 chrX:69639576 synonymous SNV . 0 20 hm7G_associated_SNPs_27895 0 0 0 0 2 KIF4A chrX:69639633 5'GT 69639633 Upstream 58bp 25389 chr1 112997102 112997102 1 + G T OV 112997103 + 112997083 112997123 41 CTTGAGGAAGAAAGGCAGCGGCATGCACAGGATACGGCTGA CTTGAGGAAGAAAGGCAGCTGCATGCACAGGATACGGCTGA < 41bp 0.68748918154391 0.899773568622638 NA NA prediction 0.424568774157456 Functional Gain - CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112997103 chr1:112997102 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_27896 0 0 0 0 2 CTTNBP2NL chr1:112997071 3'AG 112997071 Downstream 32bp 25390 chr1 112997102 112997102 1 + G T OV 112997103 + 112997083 112997123 41 CTTGAGGAAGAAAGGCAGCGGCATGCACAGGATACGGCTGA CTTGAGGAAGAAAGGCAGCTGCATGCACAGGATACGGCTGA < 41bp 0.68748918154391 0.899773568622638 NA NA prediction 0.424568774157456 Functional Gain - CTTNBP2NL ENSG00000143079 CDS Human protein_coding chr1:112997103 chr1:112997102 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_27896 0 0 0 0 2 CTTNBP2NL chr1:112997178 5'GT 112997178 Upstream 77bp 25391 chrX 153420113 153420113 1 + G A PRAD 153420114 + 153420094 153420134 41 CAGCGGCAGCTCGTACCCCGGGGTGCAGTCTTACATGATTG CAGCGGCAGCTCGTACCCCAGGGTGCAGTCTTACATGATTG < 41bp 0.533280385464042 0.745563607766409 NA NA prediction 0.424566444604735 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153420114 chrX:153420113 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_27897 0 0 0 0 1 OPN1LW chrX:153420049 3'AG 153420049 Downstream 65bp 25392 chr19 3273874 3273874 1 + C T LUAD 3273875 + 3273855 3273895 41 CCCCTCTCTCTGCAGATGGCGCGGCCAATCCAGGTGAAGCC CCCCTCTCTCTGCAGATGGTGCGGCCAATCCAGGTGAAGCC < 41bp 0.494834222388825 0.712283192611656 NA NA prediction 0.424566385223311 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3273875 chr19:3273874 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_27898 0 0 0 0 1 CELF5 chr19:3273921 5'GT 3273921 Upstream 48bp 25393 chrX 46898414 46898414 1 + C T COAD 46898415 + 46898395 46898435 41 CTCCCACATCCCACCCAGTCGGTGGGCCTTAGTCTGCAACT CTCCCACATCCCACCCAGTTGGTGGGCCTTAGTCTGCAACT < 41bp 0.511150498370986 0.72343004710905 NA NA prediction 0.424559097476128 Functional Gain - JADE3 ENSG00000102221 CDS Human protein_coding chrX:46898415 chrX:46898414 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_27901 0 0 0 0 2 JADE3 chrX:46898351 3'AG 46898351 Downstream 64bp 25394 chrX 46898414 46898414 1 + C T COAD 46898415 + 46898395 46898435 41 CTCCCACATCCCACCCAGTCGGTGGGCCTTAGTCTGCAACT CTCCCACATCCCACCCAGTTGGTGGGCCTTAGTCTGCAACT < 41bp 0.511150498370986 0.72343004710905 NA NA prediction 0.424559097476128 Functional Gain - JADE3 ENSG00000102221 CDS Human protein_coding chrX:46898415 chrX:46898414 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_27901 0 0 0 0 2 JADE3 chrX:46898467 5'GT 46898467 Upstream 54bp 25395 chr11 65108493 65108493 1 + C T COAD 65108494 + 65108474 65108514 41 GCGCTGGCGGAAAAAGCGGCGAGCCCATCCCCCTGAGGATC GCGCTGGCGGAAAAAGCGGTGAGCCCATCCCCCTGAGGATC < 41bp 0.518400800851918 0.730677894100297 NA NA prediction 0.424554186496758 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65108494 chr11:65108493 stopgain 0.998 0 20 hm7G_associated_SNPs_27902 0 0 1 0 2 DPF2 chr11:65108437 3'AG 65108437 Downstream 57bp 25396 chr11 65108493 65108493 1 + C T COAD 65108494 + 65108474 65108514 41 GCGCTGGCGGAAAAAGCGGCGAGCCCATCCCCCTGAGGATC GCGCTGGCGGAAAAAGCGGTGAGCCCATCCCCCTGAGGATC < 41bp 0.518400800851918 0.730677894100297 NA NA prediction 0.424554186496758 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65108494 chr11:65108493 stopgain 0.998 0 20 hm7G_associated_SNPs_27902 0 0 1 0 2 DPF2 chr11:65108544 5'GT 65108544 Upstream 52bp 25397 chr18 2890631 2890631 1 + G A COAD 2890632 + 2890612 2890652 41 ACAGCACAACCAAGCTGGGGGGTAGATCCAAAAGAGGGGCC ACAGCACAACCAAGCTGGGAGGTAGATCCAAAAGAGGGGCC < 41bp 0.498936079620536 0.712275510005701 NA NA prediction 0.424551020011402 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2890632 chr18:2890631 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_27903 0 0 0 0 1 EMILIN2 chr18:2890559 3'AG 2890559 Downstream 73bp 25398 chr16 22255977 22255977 1 + G T UCEC 22255978 + 22255958 22255998 41 GGAAGCACGCAATCCAGAAGGCCAAGCACATGCCCGACCCC GGAAGCACGCAATCCAGAATGCCAAGCACATGCCCGACCCC < 41bp 0.353201077479305 0.712272841061689 NA NA prediction 0.424545682123377 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22255978 chr16:22255977 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27905 0 0 1 0 2 EEF2K chr16:22255951 3'AG 22255951 Downstream 27bp 25399 chr16 22255977 22255977 1 + G T UCEC 22255978 + 22255958 22255998 41 GGAAGCACGCAATCCAGAAGGCCAAGCACATGCCCGACCCC GGAAGCACGCAATCCAGAATGCCAAGCACATGCCCGACCCC < 41bp 0.353201077479305 0.712272841061689 NA NA prediction 0.424545682123377 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22255978 chr16:22255977 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27905 0 0 1 0 2 EEF2K chr16:22256051 5'GT 22256051 Upstream 75bp 25400 chr1 150470061 150470061 1 + C T rs115720584 150470062 + 150470042 150470082 41 ACTCCCACACTGTTTTCTACGAAGCTCTGGGAACAGTCAGG ACTCCCACACTGTTTTCTATGAAGCTCTGGGAACAGTCAGG < 41bp 0.508475564832988 0.720736677854852 NA NA prediction 0.424522226043728 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150470062 chr1:150470061 nonsynonymous SNV 0.934 2 20 hm7G_associated_SNPs_27907 1 0 1 1 1 TARS2 chr1:150470006 3'AG 150470006 Downstream 56bp 25401 chr12 7288033 7288033 1 + G A UCEC 7288034 + 7288014 7288054 41 CTGTACGATCGCATCCTGCGGGTGGAAGCCATTGACGGTGA CTGTACGATCGCATCCTGCAGGTGGAAGCCATTGACGGTGA < 41bp 0.533408300567012 0.745664363361879 NA NA prediction 0.424512125589733 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7288034 chr12:7288033 nonsynonymous SNV 0.605 2 20 hm7G_associated_SNPs_27908 0 0 1 0 1 CLSTN3 chr12:7288131 5'GT 7288131 Upstream 99bp 25402 chr3 112300157 112300157 1 + G T SARC 112300158 + 112300138 112300178 41 GATCTAAGTGGCAATCTTTGGGAGCGTTCCAGTGGGGTAAG GATCTAAGTGGCAATCTTTTGGAGCGTTCCAGTGGGGTAAG < 41bp 0.653333958359298 0.865588170598382 NA NA prediction 0.424508424478169 Functional Gain - SLC35A5 ENSG00000138459 CDS Human protein_coding chr3:112300158 chr3:112300157 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_27909 0 0 0 0 1 SLC35A5 chr3:112300173 5'GT 112300173 Upstream 17bp 25403 chr17 73729634 73729634 1 + G A KIRC 73729635 + 73729615 73729655 41 TTCAGCCCTGCCTGCGGGAGGGCGAGGACAAGCCGTGCTCC TTCAGCCCTGCCTGCGGGAAGGCGAGGACAAGCCGTGCTCC < 41bp 0.549126967998677 0.761380080300293 NA NA prediction 0.424506224603233 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73729635 chr17:73729634 synonymous SNV . 0 20 hm7G_associated_SNPs_27910 0 0 0 0 1 ITGB4 chr17:73729571 3'AG 73729571 Downstream 64bp 25404 chr1 9782381 9782381 1 + G A rs149376192 9782382 + 9782362 9782402 41 CGAGGAGGCAGGCAGCGGCGGCAGCGTGGGCATCATCTTTA CGAGGAGGCAGGCAGCGGCAGCAGCGTGGGCATCATCTTTA < 41bp 0.530431638142632 0.742680301854035 NA NA prediction 0.424497327422806 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9782382 chr1:9782381 nonsynonymous SNV 0.256 0 20 hm7G_associated_SNPs_27911 0 0 1 0 1 PIK3CD chr1:9782414 5'GT 9782414 Upstream 34bp 25405 chr3 129249877 129249877 1 + G A LUSC 129249878 + 129249858 129249898 41 CGCCGCACCCCCACTCGCCGGCTGGTCCAGGTAATGGCACT CGCCGCACCCCCACTCGCCAGCTGGTCCAGGTAATGGCACT < 41bp 0.537003784580332 0.749241985394006 NA NA prediction 0.424476401627347 Functional Gain - RHO ENSG00000163914 CDS Human protein_coding chr3:129249878 chr3:129249877 nonsynonymous SNV 0.627 4 20 hm7G_associated_SNPs_27913 1 0 0 0 1 RHO chr3:129249887 5'GT 129249887 Upstream 11bp 25406 chr16 67207813 67207813 1 + G A rs547527003 67207814 + 67207794 67207834 41 GGGAGGAGAGGAGAGCCACGGCTGACGCTTGGGGACAGAAG GGGAGGAGAGGAGAGCCACAGCTGACGCTTGGGGACAGAAG < 41bp 0.545618839574177 0.757853811475869 NA NA prediction 0.424469943803383 Functional Gain - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67207814 chr16:67207813 synonymous SNV . 0 20 hm7G_associated_SNPs_27914 0 0 1 0 1 NOL3 chr16:67207765 3'AG 67207765 Downstream 49bp 25407 chr12 9089872 9089872 1 + C T HNSC 9089873 + 9089853 9089893 41 TCGCAGGCGTGGACCCCGCCGCAGCTCCTCTGACATTGCCC TCGCAGGCGTGGACCCCGCTGCAGCTCCTCTGACATTGCCC < 41bp 0.52829690729297 0.74053130302329 NA NA prediction 0.424468791460639 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9089873 chr12:9089872 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_27915 0 0 0 0 1 PHC1 chr12:9089922 5'GT 9089922 Upstream 51bp 25408 chr1 152487917 152487917 1 + G A rs73004856 152487918 + 152487898 152487938 41 TTCCAAGGGGTCGTCCCAGGGCCCCGCTCCGTGTCCCGCCC TTCCAAGGGGTCGTCCCAGAGCCCCGCTCCGTGTCCCGCCC < 41bp 0.562849223600437 0.775078071486115 NA NA prediction 0.424457695771354 Functional Gain - CRCT1 ENSG00000169509 CDS Human protein_coding chr1:152487918 chr1:152487917 nonsynonymous SNV 0.750 0 20 hm7G_associated_SNPs_27916 0 1 0 0 1 CRCT1 chr1:152487838 3'AG 152487838 Downstream 80bp 25409 chr11 130078534 130078534 1 + G A COAD 130078535 + 130078515 130078555 41 CTCCCATGTCTTCCCTGCCGGCAAGGCCATCTGGGTCACGG CTCCCATGTCTTCCCTGCCAGCAAGGCCATCTGGGTCACGG < 41bp 0.521464575220663 0.733680855979362 NA NA prediction 0.424432561517398 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130078535 chr11:130078534 nonsynonymous SNV 0.621 4 20 hm7G_associated_SNPs_27920 0 0 0 0 1 ST14 chr11:130078579 5'GT 130078579 Upstream 46bp 25410 chr14 24589035 24589035 1 + G A UCEC 24589036 + 24589016 24589056 41 TGGGATCGACGCACCATGCGGGAGGATGACCCCAAGCCTGT TGGGATCGACGCACCATGCAGGAGGATGACCCCAAGCCTGT < 41bp 0.50786712905013 0.720077200260852 NA NA prediction 0.424420142421445 Functional Gain - DCAF11 ENSG00000100897 CDS Human protein_coding chr14:24589036 chr14:24589035 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_27924 0 0 1 0 1 DCAF11 chr14:24589105 5'GT 24589105 Upstream 71bp 25411 chr5 149912527 149912527 1 + C T rs2273232 149912528 + 149912508 149912548 41 CCCTGTTTGACACACAGAACGAACTACGCGCACACATCCCA CCCTGTTTGACACACAGAATGAACTACGCGCACACATCCCA < 41bp 0.512585390489139 0.724785765244259 NA NA prediction 0.424400749510242 Functional Gain - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149912528 chr5:149912527 synonymous SNV . 0 20 hm7G_associated_SNPs_27925 0 0 1 0 2 NDST1 chr5:149912507 3'AG 149912507 Downstream 21bp 25412 chr5 149912527 149912527 1 + C T rs2273232 149912528 + 149912508 149912548 41 CCCTGTTTGACACACAGAACGAACTACGCGCACACATCCCA CCCTGTTTGACACACAGAATGAACTACGCGCACACATCCCA < 41bp 0.512585390489139 0.724785765244259 NA NA prediction 0.424400749510242 Functional Gain - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149912528 chr5:149912527 synonymous SNV . 0 20 hm7G_associated_SNPs_27925 0 0 1 0 2 NDST1 chr5:149912594 5'GT 149912594 Upstream 68bp 25413 chr5 93999556 93999556 1 + G T COAD 93999557 + 93999537 93999577 41 AGGAACTTTCCACTTTGCAGGCACATTATATCCCTCCTGTA AGGAACTTTCCACTTTGCATGCACATTATATCCCTCCTGTA < 41bp 0.378371690386611 0.712194300017538 NA NA prediction 0.424388600035077 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:93999557 chr5:93999556 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_27926 0 0 1 0 1 SLF1 chr5:93999613 5'GT 93999613 Upstream 58bp 25414 chr10 82267086 82267086 1 + G T UCEC 82267087 + 82267067 82267107 41 GTTCACCCTGGGGTTCGCCGGCTGCGTGGGGGCTCTGCGGG GTTCACCCTGGGGTTCGCCTGCTGCGTGGGGGCTCTGCGGG < 41bp 0.700474413958325 0.912666734682997 NA NA prediction 0.424384641449345 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82267087 chr10:82267086 nonsynonymous SNV 0.977 5 20 hm7G_associated_SNPs_27927 0 0 1 0 1 TSPAN14 chr10:82267130 5'GT 82267130 Upstream 45bp 25415 chr19 42797150 42797150 1 + G A STAD 42797151 + 42797131 42797171 41 GTGGCCCCCAAGGCCCAGCGGCCCAGCCCGAAGGCCCCCCA GTGGCCCCCAAGGCCCAGCAGCCCAGCCCGAAGGCCCCCCA < 41bp 0.55371570156918 0.76590404637036 NA NA prediction 0.424376689602359 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42797151 chr19:42797150 nonsynonymous SNV 0.938 2 20 hm7G_associated_SNPs_27928 0 0 1 0 1 CIC chr19:42797108 3'AG 42797108 Downstream 43bp 25416 chr21 43829605 43829605 1 + C T rs142451936 43829606 + 43829586 43829626 41 GCCCTTTTCCTCTGTCCAACGGGGCCCCTGCTGGAAAAACT GCCCTTTTCCTCTGTCCAATGGGGCCCCTGCTGGAAAAACT < 41bp 0.500544129810614 0.712730989605416 NA NA prediction 0.424373719589604 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43829606 chr21:43829605 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_27929 0 0 0 1 1 UBASH3A chr21:43829531 3'AG 43829531 Downstream 75bp 25417 chr9 101829309 101829309 1 + G T OV 101829310 + 101829290 101829330 41 GATCTGTCCACCATTGTGAGGAAAGCAGAGAGATACAGCCT GATCTGTCCACCATTGTGATGAAAGCAGAGAGATACAGCCT < 41bp 0.686342531621346 0.898527544961019 NA NA prediction 0.424370026679344 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101829310 chr9:101829309 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_27930 0 0 0 0 1 COL15A1 chr9:101829349 5'GT 101829349 Upstream 41bp 25418 chr10 94825718 94825718 1 + G A rs115738184 94825719 + 94825699 94825739 41 GGGCTGTCTTGCAGGAGTCGGCTGTGGAGCTCCTCTTCGCC GGGCTGTCTTGCAGGAGTCAGCTGTGGAGCTCCTCTTCGCC < 41bp 0.54223451287103 0.754418187238403 NA NA prediction 0.424367348734747 Functional Gain - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94825719 chr10:94825718 synonymous SNV . 0 20 hm7G_associated_SNPs_27931 0 0 0 0 1 CYP26C1 chr10:94825713 3'AG 94825713 Downstream 6bp 25419 chr17 48560834 48560834 1 + G A LUAD 48560835 + 48560815 48560855 41 CCCGGAAGCGTGTCCCCCTGGGCAGGCTGGAGCTGTGAGCA CCCGGAAGCGTGTCCCCCTAGGCAGGCTGGAGCTGTGAGCA < 41bp 0.560013448338454 0.772194341156996 NA NA prediction 0.424361785637084 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48560835 chr17:48560834 synonymous SNV . 0 20 hm7G_associated_SNPs_27934 0 0 1 0 1 RSAD1 chr17:48560848 5'GT 48560848 Upstream 15bp 25420 chr10 85968098 85968098 1 + C T GBM 85968099 + 85968079 85968119 41 ACCCCAGGGAGAGATCCTGCGGGGCCTCAAGATCACCGTCA ACCCCAGGGAGAGATCCTGTGGGGCCTCAAGATCACCGTCA < 41bp 0.52067594939967 0.732855646416637 NA NA prediction 0.424359394033934 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85968099 chr10:85968098 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_27935 0 0 0 0 1 CDHR1 chr10:85968133 5'GT 85968133 Upstream 36bp 25421 chr16 66997710 66997710 1 + G A rs78077042 66997711 + 66997691 66997731 41 GGCCACCTCTGCAGGTCATGGTATGGGTCCATGGAGGCGCT GGCCACCTCTGCAGGTCATAGTATGGGTCCATGGAGGCGCT < 41bp 0.518080599525515 0.730258854965251 NA NA prediction 0.424356510879472 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997711 chr16:66997710 nonsynonymous SNV 0.706 4 20 hm7G_associated_SNPs_27936 0 0 0 0 1 CES3 chr16:66997705 3'AG 66997705 Downstream 6bp 25422 chr20 35862424 35862424 1 + G T GBM 35862425 + 35862405 35862445 41 TTTCTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGT TTTCTCCCCATCATTCAGTTGATCCGGATTGGTGCCAATGT < 41bp 0.683249935282508 0.895421965405152 NA NA prediction 0.424344060245288 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862425 chr20:35862424 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27939 0 0 1 0 2 RPN2 chr20:35862423 3'AG 35862423 Downstream 2bp 25423 chr20 35862424 35862424 1 + G T GBM 35862425 + 35862405 35862445 41 TTTCTCCCCATCATTCAGTGGATCCGGATTGGTGCCAATGT TTTCTCCCCATCATTCAGTTGATCCGGATTGGTGCCAATGT < 41bp 0.683249935282508 0.895421965405152 NA NA prediction 0.424344060245288 Functional Gain - RPN2 ENSG00000118705 CDS Human protein_coding chr20:35862425 chr20:35862424 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_27939 0 0 1 0 2 RPN2 chr20:35862498 5'GT 35862498 Upstream 75bp 25424 chr18 63526278 63526278 1 + G T COAD 63526279 + 63526259 63526299 41 TGTGAAAATGCCCAGCCGGGGCAGGTAAGAGTCTTCAGAAC TGTGAAAATGCCCAGCCGGTGCAGGTAAGAGTCTTCAGAAC < 41bp 0.383104395118495 0.712171233564602 NA NA prediction 0.424342467129203 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63526279 chr18:63526278 nonsynonymous SNV 0.932 4 20 hm7G_associated_SNPs_27940 0 0 0 0 1 CDH7 chr18:63526282 5'GT 63526282 Upstream 5bp 25425 chr17 4496308 4496308 1 + G A PRAD 4496309 + 4496289 4496329 41 CCTGTGAGCCTCTCCTTGCGGCTGCCCCACCAGCCAGTCAC CCTGTGAGCCTCTCCTTGCAGCTGCCCCACCAGCCAGTCAC < 41bp 0.551412308763636 0.763579945067248 NA NA prediction 0.424335272607224 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4496309 chr17:4496308 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_27941 0 0 0 0 1 SMTNL2 chr17:4496224 3'AG 4496224 Downstream 85bp 25426 chr11 118404150 118404150 1 + G A rs149751735 118404151 + 118404131 118404171 41 CCAGGGCTTCTGGCTACCCGGGTGGAAGTGCCACTGCTGGG CCAGGGCTTCTGGCTACCCAGGTGGAAGTGCCACTGCTGGG < 41bp 0.52587098997169 0.73803812295396 NA NA prediction 0.424334265964539 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118404151 chr11:118404150 nonsynonymous SNV 0.934 0 20 hm7G_associated_SNPs_27942 0 0 1 0 1 TMEM25 chr11:118404135 3'AG 118404135 Downstream 16bp 25427 chr1 1119400 1119400 1 + G A UCEC 1119401 + 1119381 1119421 41 CATGATCTTCTTTGGCCACGGCTATGCTCGCCTCACCCTTA CATGATCTTCTTTGGCCACAGCTATGCTCGCCTCACCCTTA < 41bp 0.521713474328309 0.733878975715452 NA NA prediction 0.424331002774286 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1119401 chr1:1119400 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_27944 0 0 0 0 1 TTLL10 chr1:1119471 5'GT 1119471 Upstream 72bp 25428 chr19 18053481 18053481 1 + G A COAD 18053482 + 18053462 18053502 41 CAGGAGGAGAAGGAGAAGCGGCGCCTCGACCAGCTGGAACG CAGGAGGAGAAGGAGAAGCAGCGCCTCGACCAGCTGGAACG < 41bp 0.551397374432385 0.763552009921615 NA NA prediction 0.424309270978459 Functional Gain - CCDC124 ENSG00000007080 CDS Human protein_coding chr19:18053482 chr19:18053481 nonsynonymous SNV 0.940 2 20 hm7G_associated_SNPs_27946 0 0 1 0 1 CCDC124 chr19:18053465 3'AG 18053465 Downstream 17bp 25429 chr19 46202122 46202122 1 + C T LIHC 46202123 + 46202103 46202143 41 CTTCTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATC CTTCTACAGCCACTTCCCTTGCACGGTCCGCTGGTTCCATC < 41bp 0.510777304776857 0.722926406612044 NA NA prediction 0.424298203670373 Functional Gain - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202123 chr19:46202122 nonsynonymous SNV 0.140 2 20 hm7G_associated_SNPs_27949 0 0 1 0 2 QPCTL chr19:46202059 3'AG 46202059 Downstream 64bp 25430 chr19 46202122 46202122 1 + C T LIHC 46202123 + 46202103 46202143 41 CTTCTACAGCCACTTCCCTCGCACGGTCCGCTGGTTCCATC CTTCTACAGCCACTTCCCTTGCACGGTCCGCTGGTTCCATC < 41bp 0.510777304776857 0.722926406612044 NA NA prediction 0.424298203670373 Functional Gain - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46202123 chr19:46202122 nonsynonymous SNV 0.140 2 20 hm7G_associated_SNPs_27949 0 0 1 0 2 QPCTL chr19:46202158 5'GT 46202158 Upstream 37bp 25431 chr1 206904516 206904516 1 + C T rs141422074 206904517 + 206904497 206904537 41 CCCCCTTCTACTCCAACCACGGCCTTGCCATCTCTCCGGGC CCCCCTTCTACTCCAACCATGGCCTTGCCATCTCTCCGGGC < 41bp 0.502923982990289 0.715066957094785 NA NA prediction 0.424285948208991 Functional Gain - MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206904517 chr1:206904516 synonymous SNV . 0 20 hm7G_associated_SNPs_27951 0 0 1 0 2 MAPKAPK2 chr1:206904483 3'AG 206904483 Downstream 34bp 25432 chr1 206904516 206904516 1 + C T rs141422074 206904517 + 206904497 206904537 41 CCCCCTTCTACTCCAACCACGGCCTTGCCATCTCTCCGGGC CCCCCTTCTACTCCAACCATGGCCTTGCCATCTCTCCGGGC < 41bp 0.502923982990289 0.715066957094785 NA NA prediction 0.424285948208991 Functional Gain - MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206904517 chr1:206904516 synonymous SNV . 0 20 hm7G_associated_SNPs_27951 0 0 1 0 2 MAPKAPK2 chr1:206904607 5'GT 206904607 Upstream 92bp 25433 chr15 68117156 68117156 1 + G A rs146830880 68117157 + 68117137 68117177 41 TTCTAGCCCATATGAGCCGGGACAGCGAGGCATGAAGGATA TTCTAGCCCATATGAGCCGAGACAGCGAGGCATGAAGGATA < 41bp 0.500164678711443 0.712306925324925 NA NA prediction 0.424284493226963 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68117157 chr15:68117156 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_27952 0 0 0 0 1 SKOR1 chr15:68117058 3'AG 68117058 Downstream 99bp 25434 chr19 1496380 1496380 1 + G A rs138393008 1496381 + 1496361 1496401 41 GCTGTTCCTAAGGCACCACGGGGCCGTAGACAGAATCATGA GCTGTTCCTAAGGCACCACAGGGCCGTAGACAGAATCATGA < 41bp 0.546665298982793 0.758806627747827 NA NA prediction 0.424282657530069 Functional Gain - REEP6 ENSG00000115255 CDS Human protein_coding chr19:1496381 chr19:1496380 nonsynonymous SNV 0.020 0 20 hm7G_associated_SNPs_27953 0 0 1 0 2 REEP6 chr19:1496284 3'AG 1496284 Downstream 97bp 25435 chr19 1496380 1496380 1 + G A rs138393008 1496381 + 1496361 1496401 41 GCTGTTCCTAAGGCACCACGGGGCCGTAGACAGAATCATGA GCTGTTCCTAAGGCACCACAGGGCCGTAGACAGAATCATGA < 41bp 0.546665298982793 0.758806627747827 NA NA prediction 0.424282657530069 Functional Gain - REEP6 ENSG00000115255 CDS Human protein_coding chr19:1496381 chr19:1496380 nonsynonymous SNV 0.020 0 20 hm7G_associated_SNPs_27953 0 0 1 0 2 REEP6 chr19:1496452 5'GT 1496452 Upstream 73bp 25436 chr7 75511533 75511533 1 + G A UCEC 75511534 + 75511514 75511554 41 TTTCCTCAGTAATGTCTGCGGGCTGTCCATCGGGCTGGCCT TTTCCTCAGTAATGTCTGCAGGCTGTCCATCGGGCTGGCCT < 41bp 0.526788025046995 0.738928856188867 NA NA prediction 0.424281662283744 Functional Gain - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75511534 chr7:75511533 nonsynonymous SNV 0.684 4 20 hm7G_associated_SNPs_27954 0 0 1 0 1 RHBDD2 chr7:75511554 5'GT 75511554 Upstream 22bp 25437 chr17 3559823 3559823 1 + G A rs1800528 3559824 + 3559804 3559844 41 TCGTGGCTCTGAACCTGACGGGCTTCGTGGCCTACAGTGTA TCGTGGCTCTGAACCTGACAGGCTTCGTGGCCTACAGTGTA < 41bp 0.494868402599495 0.712138736385833 NA NA prediction 0.424277472771665 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3559824 chr17:3559823 synonymous SNV . 0 20 hm7G_associated_SNPs_27956 3 0 0 0 1 CTNS chr17:3559880 5'GT 3559880 Upstream 58bp 25438 chr8 144799903 144799903 1 + G A rs45495391 144799904 + 144799884 144799924 41 GGCAGTGGACCGGAGGACTGGTGAGGTCGTGGCCATCAAGA GGCAGTGGACCGGAGGACTAGTGAGGTCGTGGCCATCAAGA < 41bp 0.535538699567331 0.747672655695468 NA NA prediction 0.424267912256275 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144799904 chr8:144799903 nonsynonymous SNV 0.966 3 20 hm7G_associated_SNPs_27957 0 0 1 0 2 MAPK15 chr8:144799864 3'AG 144799864 Downstream 40bp 25439 chr8 144799903 144799903 1 + G A rs45495391 144799904 + 144799884 144799924 41 GGCAGTGGACCGGAGGACTGGTGAGGTCGTGGCCATCAAGA GGCAGTGGACCGGAGGACTAGTGAGGTCGTGGCCATCAAGA < 41bp 0.535538699567331 0.747672655695468 NA NA prediction 0.424267912256275 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144799904 chr8:144799903 nonsynonymous SNV 0.966 3 20 hm7G_associated_SNPs_27957 0 0 1 0 2 MAPK15 chr8:144799962 5'GT 144799962 Upstream 60bp 25440 chr3 38354513 38354513 1 + G T UCEC 38354514 + 38354494 38354534 41 CTCCCGGAGTCCCCGCGGTGGCTGATGATGAAAGGGAAGGT CTCCCGGAGTCCCCGCGGTTGCTGATGATGAAAGGGAAGGT < 41bp 0.696606262915875 0.908732392782961 NA NA prediction 0.424252259734171 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38354514 chr3:38354513 nonsynonymous SNV 0.462 4 20 hm7G_associated_SNPs_27958 0 0 0 2 2 SLC22A14 chr3:38354490 3'AG 38354490 Downstream 24bp 25441 chr3 38354513 38354513 1 + G T UCEC 38354514 + 38354494 38354534 41 CTCCCGGAGTCCCCGCGGTGGCTGATGATGAAAGGGAAGGT CTCCCGGAGTCCCCGCGGTTGCTGATGATGAAAGGGAAGGT < 41bp 0.696606262915875 0.908732392782961 NA NA prediction 0.424252259734171 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38354514 chr3:38354513 nonsynonymous SNV 0.462 4 20 hm7G_associated_SNPs_27958 0 0 0 2 2 SLC22A14 chr3:38354610 5'GT 38354610 Upstream 98bp 25442 chr17 32956139 32956139 1 + C T GBM 32956140 + 32956120 32956160 41 ACATTGACTACCGTGGCCACGGCGCCCTGCCTGACCTGGAG ACATTGACTACCGTGGCCATGGCGCCCTGCCTGACCTGGAG < 41bp 0.506307778053731 0.718430342613004 NA NA prediction 0.424245129118546 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32956140 chr17:32956139 synonymous SNV . 0 20 hm7G_associated_SNPs_27960 0 0 1 0 1 TMEM132E chr17:32956223 5'GT 32956223 Upstream 85bp 25443 chr19 12962989 12962989 1 + G A BRCA 12962990 + 12962970 12963010 41 CGAAGGACACGCCAAGGAGGGCCACCTTGTGAAGACGGACA CGAAGGACACGCCAAGGAGAGCCACCTTGTGAAGACGGACA < 41bp 0.480421966643323 0.7121190786161 NA NA prediction 0.4242381572322 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12962990 chr19:12962989 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_27962 0 0 1 0 2 MAST1 chr19:12962929 3'AG 12962929 Downstream 61bp 25444 chr19 12962989 12962989 1 + G A BRCA 12962990 + 12962970 12963010 41 CGAAGGACACGCCAAGGAGGGCCACCTTGTGAAGACGGACA CGAAGGACACGCCAAGGAGAGCCACCTTGTGAAGACGGACA < 41bp 0.480421966643323 0.7121190786161 NA NA prediction 0.4242381572322 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12962990 chr19:12962989 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_27962 0 0 1 0 2 MAST1 chr19:12963061 5'GT 12963061 Upstream 73bp 25445 chr17 59557523 59557523 1 + G A GBM 59557524 + 59557504 59557544 41 CCCAGCTCTCAGCCACACCGGACGTGGGCCCCCTGCTCGGC CCCAGCTCTCAGCCACACCAGACGTGGGCCCCCTGCTCGGC < 41bp 0.528319631878648 0.740438451594551 NA NA prediction 0.424237639431807 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59557524 chr17:59557523 synonymous SNV . 0 20 hm7G_associated_SNPs_27963 0 0 1 0 1 TBX4 chr17:59557451 3'AG 59557451 Downstream 73bp 25446 chr6 27220683 27220683 1 + G T UCEC 27220684 + 27220664 27220704 41 ACCTCAACTGTCTGGTGTGGGTGACCGGCAGTGGTTGTATC ACCTCAACTGTCTGGTGTGTGTGACCGGCAGTGGTTGTATC < 41bp 0.383978841576372 0.712118315027294 NA NA prediction 0.424236630054588 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27220684 chr6:27220683 nonsynonymous SNV 0.826 4 20 hm7G_associated_SNPs_27964 0 0 1 0 1 PRSS16 chr6:27220587 3'AG 27220587 Downstream 97bp 25447 chr20 61959818 61959818 1 + G A LUAD 61959819 + 61959799 61959839 41 GCCCTGGTTCCTGGAGAATGGGGGCGTGGTGGCCGCCACCT GCCCTGGTTCCTGGAGAATAGGGGCGTGGTGGCCGCCACCT < 41bp 0.490437655189287 0.712116791532664 NA NA prediction 0.424233583065328 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61959819 chr20:61959818 stopgain 0.001 0 20 hm7G_associated_SNPs_27967 0 0 0 0 1 COL20A1 chr20:61959850 5'GT 61959850 Upstream 33bp 25448 chr11 44948290 44948290 1 + C T UCEC 44948291 + 44948271 44948311 41 TGGCCGGAGCCCTTGCCATCGGGGTACTGGCCATCGAGGTA TGGCCGGAGCCCTTGCCATTGGGGTACTGGCCATCGAGGTA < 41bp 0.505197867938725 0.717313055893979 NA NA prediction 0.424230375910507 Functional Gain - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44948291 chr11:44948290 synonymous SNV . 0 20 hm7G_associated_SNPs_27969 0 0 0 0 2 TSPAN18 chr11:44948225 3'AG 44948225 Downstream 66bp 25449 chr11 44948290 44948290 1 + C T UCEC 44948291 + 44948271 44948311 41 TGGCCGGAGCCCTTGCCATCGGGGTACTGGCCATCGAGGTA TGGCCGGAGCCCTTGCCATTGGGGTACTGGCCATCGAGGTA < 41bp 0.505197867938725 0.717313055893979 NA NA prediction 0.424230375910507 Functional Gain - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44948291 chr11:44948290 synonymous SNV . 0 20 hm7G_associated_SNPs_27969 0 0 0 0 2 TSPAN18 chr11:44948308 5'GT 44948308 Upstream 19bp 25450 chr20 61452865 61452865 1 + G T UCEC 61452866 + 61452846 61452886 41 TTTGGCTTTGCAGGGCAAAGGCCTCCCTGGACCCCCCGTGA TTTGGCTTTGCAGGGCAAATGCCTCCCTGGACCCCCCGTGA < 41bp 0.368277007620379 0.712114202866358 NA NA prediction 0.424228405732716 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61452866 chr20:61452865 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27971 0 0 1 0 2 COL9A3 chr20:61452859 3'AG 61452859 Downstream 7bp 25451 chr20 61452865 61452865 1 + G T UCEC 61452866 + 61452846 61452886 41 TTTGGCTTTGCAGGGCAAAGGCCTCCCTGGACCCCCCGTGA TTTGGCTTTGCAGGGCAAATGCCTCCCTGGACCCCCCGTGA < 41bp 0.368277007620379 0.712114202866358 NA NA prediction 0.424228405732716 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61452866 chr20:61452865 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27971 0 0 1 0 2 COL9A3 chr20:61452882 5'GT 61452882 Upstream 18bp 25452 chr15 90616366 90616366 1 + C T BLCA 90616367 + 90616347 90616387 41 CCTACAGGCGAACATGAAGCGGCACATGCTGATCCACACCA CCTACAGGCGAACATGAAGTGGCACATGCTGATCCACACCA < 41bp 0.508291502088654 0.720403494016771 NA NA prediction 0.424223983856235 Functional Gain - ZNF710 ENSG00000140548 CDS Human protein_coding chr15:90616367 chr15:90616366 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_27973 0 0 0 0 1 ZNF710 chr15:90616303 3'AG 90616303 Downstream 64bp 25453 chr15 91454424 91454424 1 + C T rs12442020 91454425 + 91454405 91454445 41 ACACTCGCTTAAGTCACGACGCCCTCCCAGAGCGCACGGTG ACACTCGCTTAAGTCACGATGCCCTCCCAGAGCGCACGGTG < 41bp 0.506323669205652 0.718433809938469 NA NA prediction 0.424220281465636 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91454425 chr15:91454424 synonymous SNV . 0 20 hm7G_associated_SNPs_27974 0 0 1 0 2 MAN2A2 chr15:91454401 3'AG 91454401 Downstream 24bp 25454 chr15 91454424 91454424 1 + C T rs12442020 91454425 + 91454405 91454445 41 ACACTCGCTTAAGTCACGACGCCCTCCCAGAGCGCACGGTG ACACTCGCTTAAGTCACGATGCCCTCCCAGAGCGCACGGTG < 41bp 0.506323669205652 0.718433809938469 NA NA prediction 0.424220281465636 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91454425 chr15:91454424 synonymous SNV . 0 20 hm7G_associated_SNPs_27974 0 0 1 0 2 MAN2A2 chr15:91454468 5'GT 91454468 Upstream 45bp 25455 chr18 72183516 72183516 1 + C T SKCM 72183517 + 72183497 72183537 41 CTCTGTCCCTCCATGGCATCGAAGGCGCCTTCTCTGGGTCT CTCTGTCCCTCCATGGCATTGAAGGCGCCTTCTCTGGGTCT < 41bp 0.49742899088437 0.712107444303347 NA NA prediction 0.424214888606694 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72183517 chr18:72183516 synonymous SNV . 0 20 hm7G_associated_SNPs_27975 0 0 0 0 1 CNDP2 chr18:72183463 3'AG 72183463 Downstream 54bp 25456 chr17 18880287 18880287 1 + C T CESC 18880288 + 18880268 18880308 41 CATGCCGGGCATGATCAGCCGCGCATTGTTCCCAGGTAGGA CATGCCGGGCATGATCAGCTGCGCATTGTTCCCAGGTAGGA < 41bp 0.506480913339485 0.718584970116512 NA NA prediction 0.424208113554053 Functional Gain - SLC5A10 ENSG00000154025;ENSG00000188522 CDS Human other chr17:18880288 chr17:18880287 nonsynonymous SNV 0.843 5 20 hm7G_associated_SNPs_27976 0 0 0 0 1 SLC5A10 chr17:18880302 5'GT 18880302 Upstream 16bp 25457 chr13 99087870 99087870 1 + C T rs144530717 99087871 + 99087851 99087891 41 AGATGGTGGCACAGCTCCACGGTACGATGATCAAGATGGAG AGATGGTGGCACAGCTCCATGGTACGATGATCAAGATGGAG < 41bp 0.505261612810779 0.717363340059849 NA NA prediction 0.424203454498141 Functional Gain - FARP1 ENSG00000152767 CDS Human protein_coding chr13:99087871 chr13:99087870 synonymous SNV . 0 20 hm7G_associated_SNPs_27979 0 0 1 0 1 FARP1 chr13:99087830 3'AG 99087830 Downstream 41bp 25458 chr7 50358660 50358660 1 + G T STAD 50358661 + 50358641 50358681 41 CAGATAACCTGAGGACCATGGATGCTGATGAGGGTCAAGAC CAGATAACCTGAGGACCATTGATGCTGATGAGGGTCAAGAC < 41bp 0.667106555262565 0.879207434362125 NA NA prediction 0.424201758199119 Functional Gain - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50358661 chr7:50358660 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27980 0 0 1 0 2 IKZF1 chr7:50358644 3'AG 50358644 Downstream 17bp 25459 chr7 50358660 50358660 1 + G T STAD 50358661 + 50358641 50358681 41 CAGATAACCTGAGGACCATGGATGCTGATGAGGGTCAAGAC CAGATAACCTGAGGACCATTGATGCTGATGAGGGTCAAGAC < 41bp 0.667106555262565 0.879207434362125 NA NA prediction 0.424201758199119 Functional Gain - IKZF1 ENSG00000185811 CDS Human protein_coding chr7:50358661 chr7:50358660 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_27980 0 0 1 0 2 IKZF1 chr7:50358697 5'GT 50358697 Upstream 38bp 25460 chr6 74115486 74115486 1 + C T PAAD 74115487 + 74115467 74115507 41 CTACCTGCACATTTGATGACGCCTTTCAATGTTATCCTGAG CTACCTGCACATTTGATGATGCCTTTCAATGTTATCCTGAG < 41bp 0.500462392432697 0.712561870587619 NA NA prediction 0.424198956309843 Functional Gain - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74115487 chr6:74115486 synonymous SNV . 0 20 hm7G_associated_SNPs_27981 0 0 0 1 2 DDX43 chr6:74115402 3'AG 74115402 Downstream 85bp 25461 chr6 74115486 74115486 1 + C T PAAD 74115487 + 74115467 74115507 41 CTACCTGCACATTTGATGACGCCTTTCAATGTTATCCTGAG CTACCTGCACATTTGATGATGCCTTTCAATGTTATCCTGAG < 41bp 0.500462392432697 0.712561870587619 NA NA prediction 0.424198956309843 Functional Gain - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74115487 chr6:74115486 synonymous SNV . 0 20 hm7G_associated_SNPs_27981 0 0 0 1 2 DDX43 chr6:74115558 5'GT 74115558 Upstream 73bp 25462 chr9 2643521 2643521 1 + G T UCEC 2643522 + 2643502 2643542 41 GCAAGGATGGCAGTGATGAGGTCAACTGTCGTAAGTAGCTT GCAAGGATGGCAGTGATGATGTCAACTGTCGTAAGTAGCTT < 41bp 0.37247555422478 0.712098581724056 NA NA prediction 0.424197163448111 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2643522 chr9:2643521 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_27982 0 0 0 0 1 VLDLR chr9:2643531 5'GT 2643531 Upstream 11bp 25463 chr17 45774177 45774177 1 + G A STAD 45774178 + 45774158 45774198 41 AAGGTCAGCCTGCAGCAACGGCTCAACCAGTTCCAGCATGA AAGGTCAGCCTGCAGCAACAGCTCAACCAGTTCCAGCATGA < 41bp 0.5347688876358 0.746862058004728 NA NA prediction 0.424186340737856 Functional Gain - TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45774178 chr17:45774177 nonsynonymous SNV 0.930 0 20 hm7G_associated_SNPs_27984 0 0 0 0 1 TBKBP1 chr17:45774199 5'GT 45774199 Upstream 23bp 25464 chr3 141328727 141328727 1 + G T SKCM 141328728 + 141328708 141328748 41 GCTCTTTGTAGAGGCTTGTGGAACTATTGCAGTCTATCAAG GCTCTTTGTAGAGGCTTGTTGAACTATTGCAGTCTATCAAG < 41bp 0.385610842754026 0.712093113486502 NA NA prediction 0.424186226973003 Functional Gain - RASA2 ENSG00000155903 CDS Human protein_coding chr3:141328728 chr3:141328727 stopgain 0.996 1 20 hm7G_associated_SNPs_27985 0 0 1 0 1 RASA2 chr3:141328719 3'AG 141328719 Downstream 9bp 25465 chr11 67200238 67200238 1 + G T LUAD 67200239 + 67200219 67200259 41 CTGAGATCACGCTGGCCCTGGGCCATCTCCACTCCCAGGGC CTGAGATCACGCTGGCCCTTGGCCATCTCCACTCCCAGGGC < 41bp 0.348637081803258 0.712092792764282 NA NA prediction 0.424185585528564 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67200239 chr11:67200238 synonymous SNV . 0 20 hm7G_associated_SNPs_27986 0 0 1 0 1 RPS6KB2 chr11:67200208 3'AG 67200208 Downstream 31bp 25466 chr19 14041080 14041080 1 + G T COAD 14041081 + 14041061 14041101 41 GCAAAGGAGGCGCTCTATAGGCGGAATCTGGTAGAGAGTGA GCAAAGGAGGCGCTCTATATGCGGAATCTGGTAGAGAGTGA < 41bp 0.691755576229982 0.90384752136054 NA NA prediction 0.424183890261116 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14041081 chr19:14041080 nonsynonymous SNV 0.824 3 20 hm7G_associated_SNPs_27987 0 0 1 0 2 CC2D1A chr19:14041055 3'AG 14041055 Downstream 26bp 25467 chr19 14041080 14041080 1 + G T COAD 14041081 + 14041061 14041101 41 GCAAAGGAGGCGCTCTATAGGCGGAATCTGGTAGAGAGTGA GCAAAGGAGGCGCTCTATATGCGGAATCTGGTAGAGAGTGA < 41bp 0.691755576229982 0.90384752136054 NA NA prediction 0.424183890261116 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14041081 chr19:14041080 nonsynonymous SNV 0.824 3 20 hm7G_associated_SNPs_27987 0 0 1 0 2 CC2D1A chr19:14041102 5'GT 14041102 Upstream 23bp 25468 chr14 24590651 24590651 1 + C T STAD 24590652 + 24590632 24590672 41 AGTGCTGCACACCCTCATCCGCTGCCGGTTCTCCCCCATTC AGTGCTGCACACCCTCATCTGCTGCCGGTTCTCCCCCATTC < 41bp 0.500876257404057 0.712967463925135 NA NA prediction 0.424182413042157 Functional Gain - DCAF11 ENSG00000100897;ENSG00000259371 CDS Human other chr14:24590652 chr14:24590651 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27988 0 0 0 0 2 DCAF11 chr14:24590574 3'AG 24590574 Downstream 78bp 25469 chr14 24590651 24590651 1 + C T STAD 24590652 + 24590632 24590672 41 AGTGCTGCACACCCTCATCCGCTGCCGGTTCTCCCCCATTC AGTGCTGCACACCCTCATCTGCTGCCGGTTCTCCCCCATTC < 41bp 0.500876257404057 0.712967463925135 NA NA prediction 0.424182413042157 Functional Gain - DCAF11 ENSG00000100897;ENSG00000259371 CDS Human other chr14:24590652 chr14:24590651 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_27988 0 0 0 0 2 DCAF11 chr14:24590726 5'GT 24590726 Upstream 76bp 25470 chr19 14020687 14020687 1 + G A LAML 14020688 + 14020668 14020708 41 CCTGATGATCCCTGAGGACGGGGCTAACGATGAAGAACTGG CCTGATGATCCCTGAGGACAGGGCTAACGATGAAGAACTGG < 41bp 0.535125259262679 0.747212383623677 NA NA prediction 0.424174248721997 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020688 chr19:14020687 nonsynonymous SNV 0.252 0 20 hm7G_associated_SNPs_27990 0 0 1 0 2 CC2D1A chr19:14020636 3'AG 14020636 Downstream 52bp 25471 chr19 14020687 14020687 1 + G A LAML 14020688 + 14020668 14020708 41 CCTGATGATCCCTGAGGACGGGGCTAACGATGAAGAACTGG CCTGATGATCCCTGAGGACAGGGCTAACGATGAAGAACTGG < 41bp 0.535125259262679 0.747212383623677 NA NA prediction 0.424174248721997 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020688 chr19:14020687 nonsynonymous SNV 0.252 0 20 hm7G_associated_SNPs_27990 0 0 1 0 2 CC2D1A chr19:14020771 5'GT 14020771 Upstream 85bp 25472 chr5 149574329 149574329 1 + G A GBM 149574330 + 149574310 149574350 41 TGATGACCCCCAGTGACCAGGGCGATGTCGACCTGGATGTG TGATGACCCCCAGTGACCAAGGCGATGTCGACCTGGATGTG < 41bp 0.527613653911472 0.739699400933881 NA NA prediction 0.424171494044818 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149574330 chr5:149574329 synonymous SNV . 0 20 hm7G_associated_SNPs_27992 0 0 0 0 1 SLC6A7 chr5:149574291 3'AG 149574291 Downstream 39bp 25473 chr15 23261779 23261779 1 + G A HNSC 23261780 + 23261760 23261800 41 CAGCTGAACCCTTGCCCCCGGAGCCCCCAGCAGTGCCCTCT CAGCTGAACCCTTGCCCCCAGAGCCCCCAGCAGTGCCCTCT < 41bp 0.516795243597847 0.728879872685548 NA NA prediction 0.4241692581754 Functional Gain - GOLGA8IP ENSG00000153666 CDS Human other chr15:23261780 chr15:23261779 synonymous SNV . 0 20 hm7G_associated_SNPs_27993 0 0 0 0 1 GOLGA8IP chr15:23261763 3'AG 23261763 Downstream 17bp 25474 chr16 1245968 1245968 1 + G A ESCA 1245969 + 1245949 1245989 41 GACACAACGTGAGCCTCTCGGCTATCAGGACCGTGCGGGTG GACACAACGTGAGCCTCTCAGCTATCAGGACCGTGCGGGTG < 41bp 0.486125009893159 0.712084360469002 NA NA prediction 0.424168720938004 Functional Gain - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1245969 chr16:1245968 synonymous SNV . 0 20 hm7G_associated_SNPs_27994 0 0 0 0 2 CACNA1H chr16:1245926 3'AG 1245926 Downstream 43bp 25475 chr16 1245968 1245968 1 + G A ESCA 1245969 + 1245949 1245989 41 GACACAACGTGAGCCTCTCGGCTATCAGGACCGTGCGGGTG GACACAACGTGAGCCTCTCAGCTATCAGGACCGTGCGGGTG < 41bp 0.486125009893159 0.712084360469002 NA NA prediction 0.424168720938004 Functional Gain - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1245969 chr16:1245968 synonymous SNV . 0 20 hm7G_associated_SNPs_27994 0 0 0 0 2 CACNA1H chr16:1246023 5'GT 1246023 Upstream 56bp 25476 chr1 161696663 161696663 1 + G A rs200633919 161696664 + 161696644 161696684 41 GGTGCGCCGCTTCGACTGGGGCGCCGAGTACACAGTCCCGG GGTGCGCCGCTTCGACTGGAGCGCCGAGTACACAGTCCCGG < 41bp 0.487967482540362 0.712083513808176 NA NA prediction 0.424167027616353 Functional Gain - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161696664 chr1:161696663 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_27996 0 0 0 0 2 FCRLB chr1:161696597 3'AG 161696597 Downstream 67bp 25477 chr1 161696663 161696663 1 + G A rs200633919 161696664 + 161696644 161696684 41 GGTGCGCCGCTTCGACTGGGGCGCCGAGTACACAGTCCCGG GGTGCGCCGCTTCGACTGGAGCGCCGAGTACACAGTCCCGG < 41bp 0.487967482540362 0.712083513808176 NA NA prediction 0.424167027616353 Functional Gain - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161696664 chr1:161696663 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_27996 0 0 0 0 2 FCRLB chr1:161696638 3'AG 161696638 Downstream 26bp 25478 chr2 74900817 74900817 1 + C T COAD 74900818 + 74900798 74900838 41 TCCCAGCCCCAGCCTTTGTCGCAGCCGTGGCCTTGAGCCCA TCCCAGCCCCAGCCTTTGTTGCAGCCGTGGCCTTGAGCCCA < 41bp 0.509199751999503 0.721280278104551 NA NA prediction 0.424161052210095 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74900818 chr2:74900817 synonymous SNV . 0 20 hm7G_associated_SNPs_27997 0 0 0 0 1 SEMA4F chr2:74900804 3'AG 74900804 Downstream 14bp 25479 chrX 37984735 37984735 1 + G T UCEC 37984736 + 37984716 37984756 41 CAGCAACATCTTTCTGGGAGGAGTTCGTTTGAATTCTGGAA CAGCAACATCTTTCTGGGATGAGTTCGTTTGAATTCTGGAA < 41bp 0.379010209185726 0.712077420746559 NA NA prediction 0.424154841493117 Functional Gain - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37984736 chrX:37984735 stopgain 1.000 1 20 hm7G_associated_SNPs_27998 0 0 0 0 1 SYTL5 chrX:37984759 5'GT 37984759 Upstream 25bp 25480 chr1 203690466 203690466 1 + C T STAD 203690467 + 203690447 203690487 41 AAATAAGCCTCTGATCTCACGCACTATGATGAAGAACATCT AAATAAGCCTCTGATCTCATGCACTATGATGAAGAACATCT < 41bp 0.502154396868582 0.714230535147627 NA NA prediction 0.42415227655809 Functional Gain - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203690467 chr1:203690466 nonsynonymous SNV 0.935 4 20 hm7G_associated_SNPs_28000 0 0 1 0 1 ATP2B4 chr1:203690538 5'GT 203690538 Upstream 73bp 25481 chr2 118577359 118577359 1 + G T LUAD 118577360 + 118577340 118577380 41 GGTGCCCAGTCTGCCCCTGGGACTGACAGGTAACGTCCAGG GGTGCCCAGTCTGCCCCTGTGACTGACAGGTAACGTCCAGG < 41bp 0.393022183981194 0.7120759350263 NA NA prediction 0.424151870052599 Functional Gain - DDX18 ENSG00000088205 CDS Human protein_coding chr2:118577360 chr2:118577359 stopgain 0.990 1 20 hm7G_associated_SNPs_28001 0 0 1 0 1 DDX18 chr2:118577368 5'GT 118577368 Upstream 10bp 25482 chr11 563636 563636 1 + G T STAD 563637 + 563617 563657 41 CTCTGGCAGCCCAGCCCCAGGCTCTGTGACAGCCTAGTGAG CTCTGGCAGCCCAGCCCCATGCTCTGTGACAGCCTAGTGAG < 41bp 0.379750479477934 0.712075930630886 NA NA prediction 0.424151861261771 Functional Gain - RASSF7 ENSG00000099849 CDS Human protein_coding chr11:563637 chr11:563636 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_28002 0 0 1 0 1 RASSF7 chr11:563558 3'AG 563558 Downstream 79bp 25483 chr9 109701362 109701362 1 + C T UCEC 109701363 + 109701343 109701383 41 TCCTCCCAAAAAGCTACCCCGGCTGAAGAAGTGGAAGACTC TCCTCCCAAAAAGCTACCCTGGCTGAAGAAGTGGAAGACTC < 41bp 0.506619517433691 0.718692572164075 NA NA prediction 0.424146109460768 Functional Gain - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109701363 chr9:109701362 nonsynonymous SNV 0.079 0 20 hm7G_associated_SNPs_28003 0 0 0 0 1 ZNF462 chr9:109701388 5'GT 109701388 Upstream 27bp 25484 chr1 233482260 233482260 1 + C T READ 233482261 + 233482241 233482281 41 ATTACAGATTTTGGGTTGGCGAGGGAATGGCACAGGACCAC ATTACAGATTTTGGGTTGGTGAGGGAATGGCACAGGACCAC < 41bp 0.513327646178589 0.725394117631053 NA NA prediction 0.424132942904928 Functional Gain - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233482261 chr1:233482260 nonsynonymous SNV 0.929 5 20 hm7G_associated_SNPs_28005 0 0 1 0 1 MAP3K21 chr1:233482188 3'AG 233482188 Downstream 73bp 25485 chr1 151140716 151140716 1 + G A UCEC 151140717 + 151140697 151140737 41 GTAGGGAACCTGAACCTGCGGCTGGCCCACAGGCCGAGGAG GTAGGGAACCTGAACCTGCAGCTGGCCCACAGGCCGAGGAG < 41bp 0.526471470132785 0.738534469786091 NA NA prediction 0.424125999306613 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151140717 chr1:151140716 synonymous SNV . 0 20 hm7G_associated_SNPs_28007 0 0 1 0 3 SCNM1;TNFAIP8L2-SCNM1 chr1:151140620 3'AG 151140620 Downstream 97bp 25486 chr1 151140716 151140716 1 + G A UCEC 151140717 + 151140697 151140737 41 GTAGGGAACCTGAACCTGCGGCTGGCCCACAGGCCGAGGAG GTAGGGAACCTGAACCTGCAGCTGGCCCACAGGCCGAGGAG < 41bp 0.526471470132785 0.738534469786091 NA NA prediction 0.424125999306613 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151140717 chr1:151140716 synonymous SNV . 0 20 hm7G_associated_SNPs_28007 0 0 1 0 3 SCNM1;TNFAIP8L2-SCNM1 chr1:151140670 3'AG 151140670 Downstream 47bp 25487 chr1 151140716 151140716 1 + G A UCEC 151140717 + 151140697 151140737 41 GTAGGGAACCTGAACCTGCGGCTGGCCCACAGGCCGAGGAG GTAGGGAACCTGAACCTGCAGCTGGCCCACAGGCCGAGGAG < 41bp 0.526471470132785 0.738534469786091 NA NA prediction 0.424125999306613 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151140717 chr1:151140716 synonymous SNV . 0 20 hm7G_associated_SNPs_28007 0 0 1 0 3 SCNM1;TNFAIP8L2-SCNM1 chr1:151140814 5'GT 151140814 Upstream 99bp 25488 chr10 104160788 104160788 1 + C T STAD 104160789 + 104160769 104160809 41 GGGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTC GGGGTACCCGACCCTCACCTGCCTCCTTCTGAAGGCTGGTC < 41bp 0.497486868669232 0.712061906244428 NA NA prediction 0.424123812488857 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160789 chr10:104160788 nonsynonymous SNV 0.931 2 20 hm7G_associated_SNPs_28008 0 0 1 0 2 NFKB2 chr10:104160704 3'AG 104160704 Downstream 85bp 25489 chr10 104160788 104160788 1 + C T STAD 104160789 + 104160769 104160809 41 GGGGTACCCGACCCTCACCCGCCTCCTTCTGAAGGCTGGTC GGGGTACCCGACCCTCACCTGCCTCCTTCTGAAGGCTGGTC < 41bp 0.497486868669232 0.712061906244428 NA NA prediction 0.424123812488857 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160789 chr10:104160788 nonsynonymous SNV 0.931 2 20 hm7G_associated_SNPs_28008 0 0 1 0 2 NFKB2 chr10:104160806 5'GT 104160806 Upstream 19bp 25490 chr20 30672286 30672286 1 + C T SKCM 30672287 + 30672267 30672307 41 AGATGCCTGGGAGATCCCTCGGGAATCCCTCAAGCTGGAGA AGATGCCTGGGAGATCCCTTGGGAATCCCTCAAGCTGGAGA < 41bp 0.496747032084676 0.712059243954857 NA NA prediction 0.424118487909713 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30672287 chr20:30672286 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_28009 0 0 0 0 2 HCK chr20:30672194 3'AG 30672194 Downstream 93bp 25491 chr20 30672286 30672286 1 + C T SKCM 30672287 + 30672267 30672307 41 AGATGCCTGGGAGATCCCTCGGGAATCCCTCAAGCTGGAGA AGATGCCTGGGAGATCCCTTGGGAATCCCTCAAGCTGGAGA < 41bp 0.496747032084676 0.712059243954857 NA NA prediction 0.424118487909713 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30672287 chr20:30672286 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_28009 0 0 0 0 2 HCK chr20:30672346 5'GT 30672346 Upstream 61bp 25492 chr2 233394676 233394676 1 + G A COAD 233394677 + 233394657 233394697 41 GAGTGGGAGATAGTCCACCGGCCGGCCAGGGTCAACGTGGA GAGTGGGAGATAGTCCACCAGCCGGCCAGGGTCAACGTGGA < 41bp 0.550199915865591 0.76225861583878 NA NA prediction 0.424117399946377 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233394677 chr2:233394676 nonsynonymous SNV 0.831 1 20 hm7G_associated_SNPs_28010 0 0 0 0 1 CHRND chr2:233394649 3'AG 233394649 Downstream 28bp 25493 chr21 43838647 43838647 1 + G A COAD 43838648 + 43838628 43838668 41 TTGGGATCTCACAGCGGACGGGCTGCCGGGGCTTCCTGCCG TTGGGATCTCACAGCGGACAGGCTGCCGGGGCTTCCTGCCG < 41bp 0.552983157568799 0.765040974485266 NA NA prediction 0.424115633832934 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838648 chr21:43838647 synonymous SNV . 0 20 hm7G_associated_SNPs_28011 0 0 0 0 1 UBASH3A chr21:43838718 5'GT 43838718 Upstream 72bp 25494 chr7 30094438 30094438 1 + G T UCEC 30094439 + 30094419 30094459 41 GGAATGCCTCTGGGAGGAAGGCAAAGAAGTTATCCCAACTT GGAATGCCTCTGGGAGGAATGCAAAGAAGTTATCCCAACTT < 41bp 0.38271816620114 0.712055490650402 NA NA prediction 0.424110981300805 Functional Gain - PLEKHA8 ENSG00000106086 CDS Human protein_coding chr7:30094439 chr7:30094438 nonsynonymous SNV 0.840 0 20 hm7G_associated_SNPs_28013 0 0 0 0 1 PLEKHA8 chr7:30094481 5'GT 30094481 Upstream 44bp 25495 chr11 113265663 113265663 1 + G A STAD 113265664 + 113265644 113265684 41 CTCCCAGATTTCAGACTTCGGCCTGTCCAAGTGGATGGAAC CTCCCAGATTTCAGACTTCAGCCTGTCCAAGTGGATGGAAC < 41bp 0.518217100512863 0.730271610089072 NA NA prediction 0.424109019152419 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113265664 chr11:113265663 nonsynonymous SNV 0.874 4 20 hm7G_associated_SNPs_28014 0 0 0 0 1 ANKK1 chr11:113265651 3'AG 113265651 Downstream 13bp 25496 chr12 108626654 108626654 1 + G T STAD 108626655 + 108626635 108626675 41 TGGCAGCTACTACTTCGATGGCTCCCTCTACAACAAAGGTG TGGCAGCTACTACTTCGATTGCTCCCTCTACAACAAAGGTG < 41bp 0.360233508962069 0.712049708618772 NA NA prediction 0.424099417237545 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108626655 chr12:108626654 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_28015 0 0 0 0 1 WSCD2 chr12:108626672 5'GT 108626672 Upstream 19bp 25497 chr12 51445968 51445968 1 + G T SARC 51445969 + 51445949 51445989 41 TTTCATCAACTTCCATACCGGGAGATGGAGCATTTGAGACA TTTCATCAACTTCCATACCTGGAGATGGAGCATTTGAGACA < 41bp 0.685090548779347 0.89713728994714 NA NA prediction 0.424093482335586 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51445969 chr12:51445968 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_28018 0 0 1 0 3 LETMD1 chr12:51445875 3'AG 51445875 Downstream 94bp 25498 chr12 51445968 51445968 1 + G T SARC 51445969 + 51445949 51445989 41 TTTCATCAACTTCCATACCGGGAGATGGAGCATTTGAGACA TTTCATCAACTTCCATACCTGGAGATGGAGCATTTGAGACA < 41bp 0.685090548779347 0.89713728994714 NA NA prediction 0.424093482335586 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51445969 chr12:51445968 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_28018 0 0 1 0 3 LETMD1 chr12:51445990 5'GT 51445990 Upstream 23bp 25499 chr12 51445968 51445968 1 + G T SARC 51445969 + 51445949 51445989 41 TTTCATCAACTTCCATACCGGGAGATGGAGCATTTGAGACA TTTCATCAACTTCCATACCTGGAGATGGAGCATTTGAGACA < 41bp 0.685090548779347 0.89713728994714 NA NA prediction 0.424093482335586 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51445969 chr12:51445968 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_28018 0 0 1 0 3 LETMD1 chr12:51446029 5'GT 51446029 Upstream 62bp 25500 chr8 143603470 143603470 1 + G A LIHC 143603471 + 143603451 143603491 41 CAAGCGCTTCCTCTGCCTGGGCTGGGGTGAGCCGCGGCCTT CAAGCGCTTCCTCTGCCTGAGCTGGGGTGAGCCGCGGCCTT < 41bp 0.527831623189182 0.739877089898623 NA NA prediction 0.424090933418881 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143603471 chr8:143603470 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_28020 0 0 0 0 1 ADGRB1 chr8:143603476 5'GT 143603476 Upstream 7bp 25501 chr11 124744731 124744731 1 + G A LUSC 124744732 + 124744712 124744752 41 CCCATGGAGAGGCCAGCAGGGACTGGCGGAAGTGGCTGTGC CCCATGGAGAGGCCAGCAGAGACTGGCGGAAGTGGCTGTGC < 41bp 0.533654617681434 0.745688256038371 NA NA prediction 0.424067276713873 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124744732 chr11:124744731 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_28023 0 0 0 0 2 ROBO3 chr11:124744684 3'AG 124744684 Downstream 48bp 25502 chr11 124744731 124744731 1 + G A LUSC 124744732 + 124744712 124744752 41 CCCATGGAGAGGCCAGCAGGGACTGGCGGAAGTGGCTGTGC CCCATGGAGAGGCCAGCAGAGACTGGCGGAAGTGGCTGTGC < 41bp 0.533654617681434 0.745688256038371 NA NA prediction 0.424067276713873 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124744732 chr11:124744731 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_28023 0 0 0 0 2 ROBO3 chr11:124744805 5'GT 124744805 Upstream 75bp 25503 chr16 30199760 30199760 1 + G A SKCM 30199761 + 30199741 30199781 41 GGCTGAGGAGTGGCTGGGGGGTCGGGATGCTGGGCCCCTCC GGCTGAGGAGTGGCTGGGGAGTCGGGATGCTGGGCCCCTCC < 41bp 0.523794580603217 0.735827769163183 NA NA prediction 0.424066377119933 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199761 chr16:30199760 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_28024 0 0 0 0 1 CORO1A chr16:30199682 3'AG 30199682 Downstream 79bp 25504 chr16 20926917 20926917 1 + C T STAD 20926918 + 20926898 20926938 41 AGAAGTCCTTGGCCTCTACCGCAGCATTTTCAGGCTTGCGA AGAAGTCCTTGGCCTCTACTGCAGCATTTTCAGGCTTGCGA < 41bp 0.498966582469626 0.712017803632483 NA NA prediction 0.424035607264966 Functional Gain - LYRM1 ENSG00000102897 CDS Human protein_coding chr16:20926918 chr16:20926917 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28027 0 0 1 0 1 LYRM1 chr16:20926878 3'AG 20926878 Downstream 40bp 25505 chr17 7350413 7350413 1 + C T STAD 7350414 + 7350394 7350434 41 TTAGCGTCGTGGTGTCCTCCGACGGCTCCGTGCGTTGGCAA TTAGCGTCGTGGTGTCCTCTGACGGCTCCGTGCGTTGGCAA < 41bp 0.515752604234983 0.727766353406992 NA NA prediction 0.424027498344018 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350414 chr17:7350413 synonymous SNV . 0 20 hm7G_associated_SNPs_28028 0 0 0 0 2 CHRNB1 chr17:7350362 3'AG 7350362 Downstream 52bp 25506 chr17 7350413 7350413 1 + C T STAD 7350414 + 7350394 7350434 41 TTAGCGTCGTGGTGTCCTCCGACGGCTCCGTGCGTTGGCAA TTAGCGTCGTGGTGTCCTCTGACGGCTCCGTGCGTTGGCAA < 41bp 0.515752604234983 0.727766353406992 NA NA prediction 0.424027498344018 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350414 chr17:7350413 synonymous SNV . 0 20 hm7G_associated_SNPs_28028 0 0 0 0 2 CHRNB1 chr17:7350470 5'GT 7350470 Upstream 58bp 25507 chr19 39998245 39998245 1 + G A UCEC 39998246 + 39998226 39998266 41 AAGGACGCAGGAGGGTTCCGGGGATGGTCCGAGGTGAGGGG AAGGACGCAGGAGGGTTCCAGGGATGGTCCGAGGTGAGGGG < 41bp 0.528350531269748 0.740360684732671 NA NA prediction 0.424020306925845 Functional Gain - DLL3 ENSG00000090932 CDS Human protein_coding chr19:39998246 chr19:39998245 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_28029 0 0 1 0 1 DLL3 chr19:39998258 5'GT 39998258 Upstream 14bp 25508 chr20 36993330 36993330 1 + C T UCEC 36993331 + 36993311 36993351 41 ATGGTCTACTTTGCCATCTCGGATTATGTCTTCAACACGGC ATGGTCTACTTTGCCATCTTGGATTATGTCTTCAACACGGC < 41bp 0.500738454631745 0.712748189393415 NA NA prediction 0.42401946952334 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:36993331 chr20:36993330 nonsynonymous SNV 0.009 4 20 hm7G_associated_SNPs_28030 0 0 0 0 1 LBP chr20:36993406 5'GT 36993406 Upstream 77bp 25509 chr10 12191875 12191875 1 + G T LUAD 12191876 + 12191856 12191896 41 GGTATGATCATTACCATTGGGCAAGCCATTGTGTATGTCAT GGTATGATCATTACCATTGTGCAAGCCATTGTGTATGTCAT < 41bp 0.690359093487393 0.902364817975222 NA NA prediction 0.424011448975658 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12191876 chr10:12191875 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_28031 0 0 1 2 1 SEC61A2 chr10:12191960 5'GT 12191960 Upstream 86bp 25510 chr10 91484843 91484843 1 + G T UCEC 91484844 + 91484824 91484864 41 GTCGTTTGGCTATCTTCAAGGATTTGGTTGGTAAATGTGAC GTCGTTTGGCTATCTTCAATGATTTGGTTGGTAAATGTGAC < 41bp 0.383278745593547 0.71200279646544 NA NA prediction 0.42400559293088 Functional Gain - KIF20B ENSG00000138182 CDS Human protein_coding chr10:91484844 chr10:91484843 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_28032 0 0 1 0 2 KIF20B chr10:91484777 3'AG 91484777 Downstream 67bp 25511 chr10 91484843 91484843 1 + G T UCEC 91484844 + 91484824 91484864 41 GTCGTTTGGCTATCTTCAAGGATTTGGTTGGTAAATGTGAC GTCGTTTGGCTATCTTCAATGATTTGGTTGGTAAATGTGAC < 41bp 0.383278745593547 0.71200279646544 NA NA prediction 0.42400559293088 Functional Gain - KIF20B ENSG00000138182 CDS Human protein_coding chr10:91484844 chr10:91484843 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_28032 0 0 1 0 2 KIF20B chr10:91484915 5'GT 91484915 Upstream 73bp 25512 chr17 21203950 21203950 1 + G A UCEC 21203951 + 21203931 21203971 41 GGTGCGGCACGCCCAGAGCGGCACCATCATGGCCGTGAAGG GGTGCGGCACGCCCAGAGCAGCACCATCATGGCCGTGAAGG < 41bp 0.48007456882936 0.711995986544122 NA NA prediction 0.423991973088244 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21203951 chr17:21203950 nonsynonymous SNV 0.935 2 20 hm7G_associated_SNPs_28034 0 0 1 0 2 MAP2K3 chr17:21203857 3'AG 21203857 Downstream 94bp 25513 chr17 21203950 21203950 1 + G A UCEC 21203951 + 21203931 21203971 41 GGTGCGGCACGCCCAGAGCGGCACCATCATGGCCGTGAAGG GGTGCGGCACGCCCAGAGCAGCACCATCATGGCCGTGAAGG < 41bp 0.48007456882936 0.711995986544122 NA NA prediction 0.423991973088244 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21203951 chr17:21203950 nonsynonymous SNV 0.935 2 20 hm7G_associated_SNPs_28034 0 0 1 0 2 MAP2K3 chr17:21203970 5'GT 21203970 Upstream 21bp 25514 chr1 202279388 202279388 1 + G A SKCM 202279389 + 202279369 202279409 41 TGTGTGCCAGCTTCTTCAAGGCCTCTGGGCAGTGGGAGGCT TGTGTGCCAGCTTCTTCAAAGCCTCTGGGCAGTGGGAGGCT < 41bp 0.539395312003703 0.75138415801552 NA NA prediction 0.423977692023633 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202279389 chr1:202279388 synonymous SNV . 0 20 hm7G_associated_SNPs_28035 0 0 0 0 2 LGR6 chr1:202279325 3'AG 202279325 Downstream 64bp 25515 chr1 202279388 202279388 1 + G A SKCM 202279389 + 202279369 202279409 41 TGTGTGCCAGCTTCTTCAAGGCCTCTGGGCAGTGGGAGGCT TGTGTGCCAGCTTCTTCAAAGCCTCTGGGCAGTGGGAGGCT < 41bp 0.539395312003703 0.75138415801552 NA NA prediction 0.423977692023633 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202279389 chr1:202279388 synonymous SNV . 0 20 hm7G_associated_SNPs_28035 0 0 0 0 2 LGR6 chr1:202279485 5'GT 202279485 Upstream 98bp 25516 chr18 77457981 77457981 1 + C T UCEC 77457982 + 77457962 77458002 41 CAGCACTGTCAGCAGATGTCGAATAAAGTGAGTGCAGTCAG CAGCACTGTCAGCAGATGTTGAATAAAGTGAGTGCAGTCAG < 41bp 0.50775992286677 0.719736614706999 NA NA prediction 0.423953383680457 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77457982 chr18:77457981 nonsynonymous SNV 0.616 4 20 hm7G_associated_SNPs_28037 0 0 1 0 1 CTDP1 chr18:77457988 5'GT 77457988 Upstream 8bp 25517 chr10 121567498 121567498 1 + C T UCEC 121567499 + 121567479 121567519 41 ATTACCTGTGAAATGTAATCGCATCTACCAGATAATGTGGG ATTACCTGTGAAATGTAATTGCATCTACCAGATAATGTGGG < 41bp 0.493148861360764 0.71197418338028 NA NA prediction 0.42394836676056 Functional Gain - INPP5F ENSG00000198825 CDS Human protein_coding chr10:121567499 chr10:121567498 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_28038 0 0 0 0 2 INPP5F chr10:121567444 3'AG 121567444 Downstream 55bp 25518 chr10 121567498 121567498 1 + C T UCEC 121567499 + 121567479 121567519 41 ATTACCTGTGAAATGTAATCGCATCTACCAGATAATGTGGG ATTACCTGTGAAATGTAATTGCATCTACCAGATAATGTGGG < 41bp 0.493148861360764 0.71197418338028 NA NA prediction 0.42394836676056 Functional Gain - INPP5F ENSG00000198825 CDS Human protein_coding chr10:121567499 chr10:121567498 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_28038 0 0 0 0 2 INPP5F chr10:121567572 5'GT 121567572 Upstream 75bp 25519 chr19 5744496 5744496 1 + C T BRCA 5744497 + 5744477 5744517 41 TTTTCTTTGTCACAGGTTGCGATGCTTGTAGTGAATCAAGG TTTTCTTTGTCACAGGTTGTGATGCTTGTAGTGAATCAAGG < 41bp 0.505152298307272 0.717126341741166 NA NA prediction 0.423948086867787 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5744497 chr19:5744496 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_28039 0 0 0 0 3 CATSPERD chr19:5744438 3'AG 5744438 Downstream 59bp 25520 chr19 5744496 5744496 1 + C T BRCA 5744497 + 5744477 5744517 41 TTTTCTTTGTCACAGGTTGCGATGCTTGTAGTGAATCAAGG TTTTCTTTGTCACAGGTTGTGATGCTTGTAGTGAATCAAGG < 41bp 0.505152298307272 0.717126341741166 NA NA prediction 0.423948086867787 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5744497 chr19:5744496 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_28039 0 0 0 0 3 CATSPERD chr19:5744492 3'AG 5744492 Downstream 5bp 25521 chr19 5744496 5744496 1 + C T BRCA 5744497 + 5744477 5744517 41 TTTTCTTTGTCACAGGTTGCGATGCTTGTAGTGAATCAAGG TTTTCTTTGTCACAGGTTGTGATGCTTGTAGTGAATCAAGG < 41bp 0.505152298307272 0.717126341741166 NA NA prediction 0.423948086867787 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5744497 chr19:5744496 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_28039 0 0 0 0 3 CATSPERD chr19:5744521 5'GT 5744521 Upstream 26bp 25522 chr19 41516003 41516003 1 + C T COAD 41516004 + 41515984 41516024 41 CCAGCACCACTCTCCGCTACGGCTTCCTGCTCATGCTCAAA CCAGCACCACTCTCCGCTATGGCTTCCTGCTCATGCTCAAA < 41bp 0.501378971189638 0.713351735365658 NA NA prediction 0.423945528352039 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41516004 chr19:41516003 synonymous SNV . 0 20 hm7G_associated_SNPs_28040 0 0 0 0 1 CYP2B6 chr19:41516040 5'GT 41516040 Upstream 38bp 25523 chr1 223905532 223905532 1 + G A rs17596 223905533 + 223905513 223905553 41 ACATCTGCCAAGGAGCCCTGGGTAAGTGATAGATTCAGAGC ACATCTGCCAAGGAGCCCTAGGTAAGTGATAGATTCAGAGC < 41bp 0.498508642687679 0.711971137767411 NA NA prediction 0.423942275534823 Functional Gain - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223905533 chr1:223905532 synonymous SNV . 0 20 hm7G_associated_SNPs_28042 0 0 0 0 2 CAPN2 chr1:223905464 3'AG 223905464 Downstream 69bp 25524 chr1 223905532 223905532 1 + G A rs17596 223905533 + 223905513 223905553 41 ACATCTGCCAAGGAGCCCTGGGTAAGTGATAGATTCAGAGC ACATCTGCCAAGGAGCCCTAGGTAAGTGATAGATTCAGAGC < 41bp 0.498508642687679 0.711971137767411 NA NA prediction 0.423942275534823 Functional Gain - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223905533 chr1:223905532 synonymous SNV . 0 20 hm7G_associated_SNPs_28042 0 0 0 0 2 CAPN2 chr1:223905533 5'GT 223905533 Upstream 2bp 25525 chr2 46602913 46602913 1 + C T COAD 46602914 + 46602894 46602934 41 TGGCTGGAGACCCAGGGGACGGTCATCTACAACCCTCGCAA TGGCTGGAGACCCAGGGGATGGTCATCTACAACCCTCGCAA < 41bp 0.520068153386484 0.732037114768226 NA NA prediction 0.423937922763484 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46602914 chr2:46602913 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_28044 0 0 0 0 1 EPAS1 chr2:46602976 5'GT 46602976 Upstream 64bp 25526 chr17 8222388 8222388 1 + G A ESCA 8222389 + 8222369 8222409 41 TCCAGGCCCAGCAGGTTCCGGATCCATCTGGACCCCCTACC TCCAGGCCCAGCAGGTTCCAGATCCATCTGGACCCCCTACC < 41bp 0.510025929819547 0.721993676587292 NA NA prediction 0.42393549353549 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222389 chr17:8222388 synonymous SNV . 0 20 hm7G_associated_SNPs_28045 0 0 0 0 2 ARHGEF15 chr17:8222325 3'AG 8222325 Downstream 64bp 25527 chr17 8222388 8222388 1 + G A ESCA 8222389 + 8222369 8222409 41 TCCAGGCCCAGCAGGTTCCGGATCCATCTGGACCCCCTACC TCCAGGCCCAGCAGGTTCCAGATCCATCTGGACCCCCTACC < 41bp 0.510025929819547 0.721993676587292 NA NA prediction 0.42393549353549 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222389 chr17:8222388 synonymous SNV . 0 20 hm7G_associated_SNPs_28045 0 0 0 0 2 ARHGEF15 chr17:8222477 5'GT 8222477 Upstream 90bp 25528 chr18 44584685 44584685 1 + G T UCEC 44584686 + 44584666 44584706 41 AACCACAGCGGGGAAGACAGGGGACACCAAATCGCTCAATA AACCACAGCGGGGAAGACATGGGACACCAAATCGCTCAATA < 41bp 0.367331580417184 0.711963247574851 NA NA prediction 0.423926495149701 Functional Gain - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44584686 chr18:44584685 nonsynonymous SNV 0.052 2 20 hm7G_associated_SNPs_28047 0 0 0 0 2 KATNAL2 chr18:44584606 3'AG 44584606 Downstream 80bp 25529 chr18 44584685 44584685 1 + G T UCEC 44584686 + 44584666 44584706 41 AACCACAGCGGGGAAGACAGGGGACACCAAATCGCTCAATA AACCACAGCGGGGAAGACATGGGACACCAAATCGCTCAATA < 41bp 0.367331580417184 0.711963247574851 NA NA prediction 0.423926495149701 Functional Gain - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44584686 chr18:44584685 nonsynonymous SNV 0.052 2 20 hm7G_associated_SNPs_28047 0 0 0 0 2 KATNAL2 chr18:44584723 5'GT 44584723 Upstream 39bp 25530 chr22 20127398 20127398 1 + C T UCEC 20127399 + 20127379 20127419 41 ACGCTGAGGGGCTGGGAGCCGCGCACACCACCATCACGTAT ACGCTGAGGGGCTGGGAGCTGCGCACACCACCATCACGTAT < 41bp 0.50050832362784 0.712471527427455 NA NA prediction 0.42392640759923 Functional Gain - ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20127399 chr22:20127398 synonymous SNV . 0 20 hm7G_associated_SNPs_28048 0 0 1 0 1 ZDHHC8 chr22:20127415 5'GT 20127415 Upstream 18bp 25531 chr17 48244740 48244740 1 + G A rs573792379 48244741 + 48244721 48244761 41 CCCCACAGTTCTCCTGGCAGGGCTGGGGGACACCGAGGCCC CCCCACAGTTCTCCTGGCAAGGCTGGGGGACACCGAGGCCC < 41bp 0.582066022673258 0.794017608325008 NA NA prediction 0.4239031713035 Functional Gain - SGCA ENSG00000108823 CDS Human protein_coding chr17:48244741 chr17:48244740 nonsynonymous SNV 0.010 1 20 hm7G_associated_SNPs_28050 0 0 0 0 1 SGCA chr17:48244729 3'AG 48244729 Downstream 12bp 25532 chr15 75105316 75105316 1 + G A SKCM 75105317 + 75105297 75105337 41 GTACAAGCTCAGCTTCAAAGGCCCAAGGCTGGCATTGCCTG GTACAAGCTCAGCTTCAAAAGCCCAAGGCTGGCATTGCCTG < 41bp 0.485029138872257 0.711950352119264 NA NA prediction 0.423900704238528 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75105317 chr15:75105316 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_28051 0 0 0 0 2 LMAN1L chr15:75105291 3'AG 75105291 Downstream 26bp 25533 chr15 75105316 75105316 1 + G A SKCM 75105317 + 75105297 75105337 41 GTACAAGCTCAGCTTCAAAGGCCCAAGGCTGGCATTGCCTG GTACAAGCTCAGCTTCAAAAGCCCAAGGCTGGCATTGCCTG < 41bp 0.485029138872257 0.711950352119264 NA NA prediction 0.423900704238528 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75105317 chr15:75105316 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_28051 0 0 0 0 2 LMAN1L chr15:75105370 5'GT 75105370 Upstream 55bp 25534 chr5 148630979 148630979 1 + C T COAD 148630980 + 148630960 148631000 41 CGCAGTCAACTGGGGCATGCGAGGTGAGTGCAGGCCTGCAG CGCAGTCAACTGGGGCATGTGAGGTGAGTGCAGGCCTGCAG < 41bp 0.506571866159547 0.718518513306256 NA NA prediction 0.423893294293418 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148630980 chr5:148630979 stopgain 1.000 1 20 hm7G_associated_SNPs_28053 0 0 1 0 2 ABLIM3 chr5:148630922 3'AG 148630922 Downstream 58bp 25535 chr5 148630979 148630979 1 + C T COAD 148630980 + 148630960 148631000 41 CGCAGTCAACTGGGGCATGCGAGGTGAGTGCAGGCCTGCAG CGCAGTCAACTGGGGCATGTGAGGTGAGTGCAGGCCTGCAG < 41bp 0.506571866159547 0.718518513306256 NA NA prediction 0.423893294293418 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148630980 chr5:148630979 stopgain 1.000 1 20 hm7G_associated_SNPs_28053 0 0 1 0 2 ABLIM3 chr5:148630982 5'GT 148630982 Upstream 4bp 25536 chr15 42681154 42681154 1 + G T COAD 42681155 + 42681135 42681175 41 TTCCTACGAAGCTCTGAAAGGTGGGAACACCACAGAGGCCA TTCCTACGAAGCTCTGAAATGTGGGAACACCACAGAGGCCA < 41bp 0.533769687078672 0.745715288346172 NA NA prediction 0.423891202535001 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42681155 chr15:42681154 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28054 0 0 0 0 1 CAPN3 chr15:42681126 3'AG 42681126 Downstream 29bp 25537 chr4 108911194 108911194 1 + G T LUSC 108911195 + 108911175 108911215 41 CGTGACGGTCATCGGCGGCGGGCTGATGGGCGCCGGCATTG CGTGACGGTCATCGGCGGCTGGCTGATGGGCGCCGGCATTG < 41bp 0.681171053819275 0.893115735501157 NA NA prediction 0.423889363363764 Functional Gain - HADH ENSG00000138796 CDS Human protein_coding chr4:108911195 chr4:108911194 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28055 0 0 1 0 1 HADH chr4:108911220 5'GT 108911220 Upstream 27bp 25538 chr1 906512 906512 1 + G A rs201888830 906513 + 906493 906533 41 CGCCGTCTAACCCGGCTGCGGACGGCGTCAGGGCACGAACC CGCCGTCTAACCCGGCTGCAGACGGCGTCAGGGCACGAACC < 41bp 0.488440626600257 0.711941169025386 NA NA prediction 0.423882338050772 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906513 chr1:906512 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28057 0 0 0 0 3 PLEKHN1 chr1:906457 3'AG 906457 Downstream 56bp 25539 chr1 906512 906512 1 + G A rs201888830 906513 + 906493 906533 41 CGCCGTCTAACCCGGCTGCGGACGGCGTCAGGGCACGAACC CGCCGTCTAACCCGGCTGCAGACGGCGTCAGGGCACGAACC < 41bp 0.488440626600257 0.711941169025386 NA NA prediction 0.423882338050772 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906513 chr1:906512 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28057 0 0 0 0 3 PLEKHN1 chr1:906493 3'AG 906493 Downstream 20bp 25540 chr1 906512 906512 1 + G A rs201888830 906513 + 906493 906533 41 CGCCGTCTAACCCGGCTGCGGACGGCGTCAGGGCACGAACC CGCCGTCTAACCCGGCTGCAGACGGCGTCAGGGCACGAACC < 41bp 0.488440626600257 0.711941169025386 NA NA prediction 0.423882338050772 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:906513 chr1:906512 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28057 0 0 0 0 3 PLEKHN1 chr1:906588 5'GT 906588 Upstream 77bp 25541 chr11 61487650 61487650 1 + G A BLCA 61487651 + 61487631 61487671 41 CCCGGGATCGTGGTGTTCCGGCGGCGCTGGTCTGTGGGCAG CCCGGGATCGTGGTGTTCCAGCGGCGCTGGTCTGTGGGCAG < 41bp 0.495910872670865 0.711940638906692 NA NA prediction 0.423881277813383 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61487651 chr11:61487650 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28058 0 0 1 0 2 DAGLA chr11:61487584 3'AG 61487584 Downstream 67bp 25542 chr11 61487650 61487650 1 + G A BLCA 61487651 + 61487631 61487671 41 CCCGGGATCGTGGTGTTCCGGCGGCGCTGGTCTGTGGGCAG CCCGGGATCGTGGTGTTCCAGCGGCGCTGGTCTGTGGGCAG < 41bp 0.495910872670865 0.711940638906692 NA NA prediction 0.423881277813383 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61487651 chr11:61487650 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28058 0 0 1 0 2 DAGLA chr11:61487722 5'GT 61487722 Upstream 73bp 25543 chr17 32956104 32956104 1 + C T CESC 32956105 + 32956085 32956125 41 CACCAGCCAGTCAGTCAAGCGGAGGATCATGTGGCACATTG CACCAGCCAGTCAGTCAAGTGGAGGATCATGTGGCACATTG < 41bp 0.524839414985071 0.736779599392703 NA NA prediction 0.423880368815263 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32956105 chr17:32956104 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_28059 0 0 0 0 1 TMEM132E chr17:32956031 3'AG 32956031 Downstream 74bp 25544 chr4 1806690 1806690 1 + G A COAD 1806691 + 1806671 1806711 41 CCCAAATGGGAGCTGTCTCGGGCCCGGTCAGTGGTGCTGAG CCCAAATGGGAGCTGTCTCAGGCCCGGTCAGTGGTGCTGAG < 41bp 0.492050375959599 0.71193881882752 NA NA prediction 0.42387763765504 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1806691 chr4:1806690 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_28060 0 0 1 0 1 FGFR3 chr4:1806696 5'GT 1806696 Upstream 7bp 25545 chr1 156617355 156617355 1 + G A BLCA 156617356 + 156617336 156617376 41 ATGCTTTCTCCTTTTCTGGGGCCCAGGAGGCCTGTGCCCGC ATGCTTTCTCCTTTTCTGGAGCCCAGGAGGCCTGTGCCCGC < 41bp 0.526982151426369 0.738920535796492 NA NA prediction 0.423876768740246 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156617356 chr1:156617355 synonymous SNV . 0 20 hm7G_associated_SNPs_28061 0 0 0 0 1 BCAN chr1:156617300 3'AG 156617300 Downstream 56bp 25546 chr5 174102 174102 1 + C T UCEC 174103 + 174083 174123 41 TGAGATTTGGTTTCGCAGGCGGCGGAAATCTCAGGACACCT TGAGATTTGGTTTCGCAGGTGGCGGAAATCTCAGGACACCT < 41bp 0.514594095045964 0.726531656735742 NA NA prediction 0.423875123379556 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:174103 chr5:174102 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_28062 0 0 1 0 1 PLEKHG4B chr5:174033 3'AG 174033 Downstream 70bp 25547 chr19 45448094 45448094 1 + G A SKCM 45448095 + 45448075 45448115 41 TGGTGAGGGGCAGGATGAAGGAGCTGCTGGAGACAGTGGTG TGGTGAGGGGCAGGATGAAAGAGCTGCTGGAGACAGTGGTG < 41bp 0.498605539683529 0.711934250075363 NA NA prediction 0.423868500150727 Functional Gain - APOC4 ENSG00000224916;ENSG00000267467 CDS Human other chr19:45448095 chr19:45448094 synonymous SNV . 0 20 hm7G_associated_SNPs_28064 0 0 0 0 2 APOC4 chr19:45448006 3'AG 45448006 Downstream 89bp 25548 chr19 45448094 45448094 1 + G A SKCM 45448095 + 45448075 45448115 41 TGGTGAGGGGCAGGATGAAGGAGCTGCTGGAGACAGTGGTG TGGTGAGGGGCAGGATGAAAGAGCTGCTGGAGACAGTGGTG < 41bp 0.498605539683529 0.711934250075363 NA NA prediction 0.423868500150727 Functional Gain - APOC4 ENSG00000224916;ENSG00000267467 CDS Human other chr19:45448095 chr19:45448094 synonymous SNV . 0 20 hm7G_associated_SNPs_28064 0 0 0 0 2 APOC4 chr19:45448147 5'GT 45448147 Upstream 54bp 25549 chr2 47288044 47288044 1 + G T STAD 47288045 + 47288025 47288065 41 TGAAGGGCAACCTGGAGGAGGCCAAGCAGCTGTACAAGGAG TGAAGGGCAACCTGGAGGATGCCAAGCAGCTGTACAAGGAG < 41bp 0.361121720791952 0.711932205690126 NA NA prediction 0.423864411380252 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47288045 chr2:47288044 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_28065 0 0 0 0 1 TTC7A chr2:47288110 5'GT 47288110 Upstream 67bp 25550 chr12 57989740 57989740 1 + C T LGG 57989741 + 57989721 57989761 41 CTTCCTTATCTCCTACGATCGGACTCTGGTCATCAAAGAAG CTTCCTTATCTCCTACGATTGGACTCTGGTCATCAAAGAAG < 41bp 0.493580347946488 0.711932156983288 NA NA prediction 0.423864313966577 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57989741 chr12:57989740 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_28066 0 0 1 0 2 PIP4K2C chr12:57989671 3'AG 57989671 Downstream 70bp 25551 chr12 57989740 57989740 1 + C T LGG 57989741 + 57989721 57989761 41 CTTCCTTATCTCCTACGATCGGACTCTGGTCATCAAAGAAG CTTCCTTATCTCCTACGATTGGACTCTGGTCATCAAAGAAG < 41bp 0.493580347946488 0.711932156983288 NA NA prediction 0.423864313966577 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57989741 chr12:57989740 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_28066 0 0 1 0 2 PIP4K2C chr12:57989814 5'GT 57989814 Upstream 75bp 25552 chr9 135864529 135864529 1 + G A rs370269669 135864530 + 135864510 135864550 41 CTTCGCCTGTGACATCTGCGGCAAAACCTTCGGCCACGCTG CTTCGCCTGTGACATCTGCAGCAAAACCTTCGGCCACGCTG < 41bp 0.53903620791987 0.750966803283705 NA NA prediction 0.42386119072767 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864530 chr9:135864529 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_28068 0 0 0 0 2 GFI1B chr9:135864448 3'AG 135864448 Downstream 82bp 25553 chr9 135864529 135864529 1 + G A rs370269669 135864530 + 135864510 135864550 41 CTTCGCCTGTGACATCTGCGGCAAAACCTTCGGCCACGCTG CTTCGCCTGTGACATCTGCAGCAAAACCTTCGGCCACGCTG < 41bp 0.53903620791987 0.750966803283705 NA NA prediction 0.42386119072767 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864530 chr9:135864529 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_28068 0 0 0 0 2 GFI1B chr9:135864585 5'GT 135864585 Upstream 57bp 25554 chr19 15132710 15132710 1 + G A GBM 15132711 + 15132691 15132731 41 ACGTGGGCACCCAACTCCCGGAGGCTGCGCGCCTCGCACAG ACGTGGGCACCCAACTCCCAGAGGCTGCGCGCCTCGCACAG < 41bp 0.508290496030621 0.720207167462372 NA NA prediction 0.423833342863502 Functional Gain - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15132711 chr19:15132710 synonymous SNV . 0 20 hm7G_associated_SNPs_28071 0 0 0 0 1 CCDC105 chr19:15132731 5'GT 15132731 Upstream 22bp 25555 chr17 1639474 1639474 1 + G A LUAD 1639475 + 1639455 1639495 41 CACAGGCCTGGTTCTGCGAGGCTGGCCAGCCCACGAGGGGG CACAGGCCTGGTTCTGCGAAGCTGGCCAGCCCACGAGGGGG < 41bp 0.488731291909605 0.711912321431659 NA NA prediction 0.423824642863317 Functional Gain - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1639475 chr17:1639474 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_28072 0 0 1 0 1 WDR81 chr17:1639512 5'GT 1639512 Upstream 39bp 25556 chr14 100563887 100563887 1 + C T UCEC 100563888 + 100563868 100563908 41 GCCAACCTTCCACCAGTGGCGAGATGCCCGCCAGGTCTACG GCCAACCTTCCACCAGTGGTGAGATGCCCGCCAGGTCTACG < 41bp 0.498098347523692 0.711910991007012 NA NA prediction 0.423821982014024 Functional Gain - EVL ENSG00000196405 CDS Human protein_coding chr14:100563888 chr14:100563887 stopgain 1.000 1 20 hm7G_associated_SNPs_28073 0 0 1 0 1 EVL chr14:100563818 3'AG 100563818 Downstream 70bp 25557 chr12 52283235 52283235 1 + G A COAD 52283236 + 52283216 52283256 41 GGGACCAGCGGGGGCTCACGGCGTTAATGAAGGCTGCCATG GGGACCAGCGGGGGCTCACAGCGTTAATGAAGGCTGCCATG < 41bp 0.553918396647973 0.765827566619028 NA NA prediction 0.423818339942109 Functional Gain - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52283236 chr12:52283235 synonymous SNV . 0 20 hm7G_associated_SNPs_28074 0 0 0 0 3 ANKRD33 chr12:52283156 3'AG 52283156 Downstream 80bp 25558 chr12 52283235 52283235 1 + G A COAD 52283236 + 52283216 52283256 41 GGGACCAGCGGGGGCTCACGGCGTTAATGAAGGCTGCCATG GGGACCAGCGGGGGCTCACAGCGTTAATGAAGGCTGCCATG < 41bp 0.553918396647973 0.765827566619028 NA NA prediction 0.423818339942109 Functional Gain - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52283236 chr12:52283235 synonymous SNV . 0 20 hm7G_associated_SNPs_28074 0 0 0 0 3 ANKRD33 chr12:52283266 5'GT 52283266 Upstream 32bp 25559 chr12 52283235 52283235 1 + G A COAD 52283236 + 52283216 52283256 41 GGGACCAGCGGGGGCTCACGGCGTTAATGAAGGCTGCCATG GGGACCAGCGGGGGCTCACAGCGTTAATGAAGGCTGCCATG < 41bp 0.553918396647973 0.765827566619028 NA NA prediction 0.423818339942109 Functional Gain - ANKRD33 ENSG00000167612 CDS Human protein_coding chr12:52283236 chr12:52283235 synonymous SNV . 0 20 hm7G_associated_SNPs_28074 0 0 0 0 3 ANKRD33 chr12:52283296 5'GT 52283296 Upstream 62bp 25560 chr3 12526006 12526006 1 + G A rs3806662 12526007 + 12525987 12526027 41 GGTAACGGCGAGCGCGTGGGGCCAAGAAAGGTAAGGGCCCT GGTAACGGCGAGCGCGTGGAGCCAAGAAAGGTAAGGGCCCT < 41bp 0.494588078151505 0.711907534392072 NA NA prediction 0.423815068784144 Functional Gain - TSEN2 ENSG00000154743 UTR5 Human protein_coding chr3:12526007 chr3:12526006 . . 0 20 hm7G_associated_SNPs_28075 1 0 0 0 1 TSEN2 chr3:12526016 5'GT 12526016 Upstream 11bp 25561 chr17 72233624 72233624 1 + C T HNSC 72233625 + 72233605 72233645 41 TGGAGCTGACCAAGCTATCCGACCAGACTGGCTACGTGGAG TGGAGCTGACCAAGCTATCTGACCAGACTGGCTACGTGGAG < 41bp 0.49801428894288 0.711901111665493 NA NA prediction 0.423802223330986 Functional Gain - TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72233625 chr17:72233624 synonymous SNV . 0 20 hm7G_associated_SNPs_28076 0 0 1 0 1 TTYH2 chr17:72233653 5'GT 72233653 Upstream 30bp 25562 chr11 67188145 67188145 1 + G A rs537788289 67188146 + 67188126 67188166 41 ACTCCCTGCCGAGGACGCTGGAGGTGGCGCTGGCCCAGTGC ACTCCCTGCCGAGGACGCTAGAGGTGGCGCTGGCCCAGTGC < 41bp 0.483900617046755 0.711894460769808 NA NA prediction 0.423788921539615 Functional Gain - CARNS1 ENSG00000172508 CDS Human protein_coding chr11:67188146 chr11:67188145 synonymous SNV . 0 20 hm7G_associated_SNPs_28078 0 0 0 0 1 CARNS1 chr11:67188080 3'AG 67188080 Downstream 66bp 25563 chr10 28970967 28970967 1 + G T GBM 28970968 + 28970948 28970988 41 ACCTTATCACCAAGGTGCAGGAGCTGACTTCTTCCAAAGAG ACCTTATCACCAAGGTGCATGAGCTGACTTCTTCCAAAGAG < 41bp 0.384065037106467 0.711893820753592 NA NA prediction 0.423787641507185 Functional Gain - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28970968 chr10:28970967 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_28079 0 0 1 0 1 BAMBI chr10:28970912 3'AG 28970912 Downstream 56bp 25564 chr17 26575220 26575220 1 + G A rs139397685 26575221 + 26575201 26575241 41 CGCCCCCTACCACTCCACGGGCAGTGCCAGCCCAGCTCTCC CGCCCCCTACCACTCCACGAGCAGTGCCAGCCCAGCTCTCC < 41bp 0.492284223609192 0.711883152868044 NA NA prediction 0.423766305736089 Functional Gain - PPY2P ENSG00000265060 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:26575221 chr17:26575220 . . 0 20 hm7G_associated_SNPs_28081 0 0 0 0 1 PPY2P chr17:26575166 3'AG 26575166 Downstream 55bp 25565 chr17 77755583 77755583 1 + C T LUSC 77755584 + 77755564 77755604 41 TGCCATGTCCTCCTGCAGCCGGCGCTCCAAGCTCAAGGTGG TGCCATGTCCTCCTGCAGCTGGCGCTCCAAGCTCAAGGTGG < 41bp 0.501317478648627 0.713199790181091 NA NA prediction 0.423764623064927 Functional Gain - CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755584 chr17:77755583 nonsynonymous SNV 0.205 2 20 hm7G_associated_SNPs_28082 0 0 1 0 2 CBX2 chr17:77755495 3'AG 77755495 Downstream 89bp 25566 chr17 77755583 77755583 1 + C T LUSC 77755584 + 77755564 77755604 41 TGCCATGTCCTCCTGCAGCCGGCGCTCCAAGCTCAAGGTGG TGCCATGTCCTCCTGCAGCTGGCGCTCCAAGCTCAAGGTGG < 41bp 0.501317478648627 0.713199790181091 NA NA prediction 0.423764623064927 Functional Gain - CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755584 chr17:77755583 nonsynonymous SNV 0.205 2 20 hm7G_associated_SNPs_28082 0 0 1 0 2 CBX2 chr17:77755600 5'GT 77755600 Upstream 18bp 25567 chr19 51298165 51298165 1 + G A rs138191743 51298166 + 51298146 51298186 41 CAGCTGACTGCCCCGGCCCGGCCTCCCGCCCATGGGGTCTC CAGCTGACTGCCCCGGCCCAGCCTCCCGCCCATGGGGTCTC < 41bp 0.485234950922439 0.711879075688212 NA NA prediction 0.423758151376423 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51298166 chr19:51298165 nonsynonymous SNV 0.145 2 20 hm7G_associated_SNPs_28085 0 0 0 0 1 ACPT chr19:51298221 5'GT 51298221 Upstream 57bp 25568 chr10 99329965 99329965 1 + G A rs140190667 99329966 + 99329946 99329986 41 TCTACTGCCTGTCACCGCCGGTGAACCTGCTGCTGGAGCAC TCTACTGCCTGTCACCGCCAGTGAACCTGCTGCTGGAGCAC < 41bp 0.515085257910604 0.726962285131606 NA NA prediction 0.423754054442003 Functional Gain - UBTD1 ENSG00000165886 CDS Human protein_coding chr10:99329966 chr10:99329965 synonymous SNV . 0 20 hm7G_associated_SNPs_28087 0 0 0 0 1 UBTD1 chr10:99329895 3'AG 99329895 Downstream 71bp 25569 chr16 613344 613344 1 + G A rs116903998 613345 + 613325 613365 41 GGCACAGGGGCGAGGGCGCGGTCTCGGAAGCCCAAGAAGCC GGCACAGGGGCGAGGGCGCAGTCTCGGAAGCCCAAGAAGCC < 41bp 0.535051834549857 0.746924872778629 NA NA prediction 0.423746076457545 Functional Gain - PRR35 ENSG00000161992 CDS Human protein_coding chr16:613345 chr16:613344 nonsynonymous SNV 0.074 3 20 hm7G_associated_SNPs_28090 0 0 0 0 1 PRR35 chr16:613256 3'AG 613256 Downstream 89bp 25570 chr1 22903359 22903359 1 + G A BLCA 22903360 + 22903340 22903380 41 GCCGGCTACGAGGAGCGGCGGGATGCCTGTGTGGGTGAGCG GCCGGCTACGAGGAGCGGCAGGATGCCTGTGTGGGTGAGCG < 41bp 0.486067177086674 0.711869983850091 NA NA prediction 0.423739967700181 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22903360 chr1:22903359 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_28092 0 0 1 0 1 EPHA8 chr1:22903373 5'GT 22903373 Upstream 15bp 25571 chr19 4491801 4491801 1 + G A UCEC 4491802 + 4491782 4491822 41 GCAGCGGTCCGGGCGCCACGGAGGGGCCCTCTGGGGGGACG GCAGCGGTCCGGGCGCCACAGAGGGGCCCTCTGGGGGGACG < 41bp 0.523619024449006 0.735482746260696 NA NA prediction 0.42372744362338 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4491802 chr19:4491801 nonsynonymous SNV 0.500 3 20 hm7G_associated_SNPs_28093 0 0 1 0 2 HDGFL2 chr19:4491761 3'AG 4491761 Downstream 41bp 25572 chr19 4491801 4491801 1 + G A UCEC 4491802 + 4491782 4491822 41 GCAGCGGTCCGGGCGCCACGGAGGGGCCCTCTGGGGGGACG GCAGCGGTCCGGGCGCCACAGAGGGGCCCTCTGGGGGGACG < 41bp 0.523619024449006 0.735482746260696 NA NA prediction 0.42372744362338 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4491802 chr19:4491801 nonsynonymous SNV 0.500 3 20 hm7G_associated_SNPs_28093 0 0 1 0 2 HDGFL2 chr19:4491832 5'GT 4491832 Upstream 32bp 25573 chr10 133948606 133948606 1 + C T LUSC 133948607 + 133948587 133948627 41 AAAATCGCGGAGTTAAGTGCGATTATCCGCAAACTGGAGGA AAAATCGCGGAGTTAAGTGTGATTATCCGCAAACTGGAGGA < 41bp 0.514397809575199 0.726259069328641 NA NA prediction 0.423722519506883 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133948607 chr10:133948606 nonsynonymous SNV 0.009 3 20 hm7G_associated_SNPs_28094 0 0 0 0 2 JAKMIP3 chr10:133948545 3'AG 133948545 Downstream 62bp 25574 chr10 133948606 133948606 1 + C T LUSC 133948607 + 133948587 133948627 41 AAAATCGCGGAGTTAAGTGCGATTATCCGCAAACTGGAGGA AAAATCGCGGAGTTAAGTGTGATTATCCGCAAACTGGAGGA < 41bp 0.514397809575199 0.726259069328641 NA NA prediction 0.423722519506883 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133948607 chr10:133948606 nonsynonymous SNV 0.009 3 20 hm7G_associated_SNPs_28094 0 0 0 0 2 JAKMIP3 chr10:133948664 5'GT 133948664 Upstream 59bp 25575 chr11 67187062 67187062 1 + G T COAD 67187063 + 67187043 67187083 41 ACACAGTGCTGGCGCTGCTGGAGAAGCTGGAGGAGGAGGAG ACACAGTGCTGGCGCTGCTTGAGAAGCTGGAGGAGGAGGAG < 41bp 0.701861653699487 0.913721210573512 NA NA prediction 0.423719113748049 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human protein_coding chr11:67187063 chr11:67187062 nonsynonymous SNV 0.933 1 20 hm7G_associated_SNPs_28095 0 0 0 0 1 CARNS1 chr11:67187132 5'GT 67187132 Upstream 71bp 25576 chr14 69791494 69791494 1 + C T UCEC 69791495 + 69791475 69791515 41 GGCCCGTTCCACCCTGCTGCGCACAGTGAAGAGGTAAGTCC GGCCCGTTCCACCCTGCTGTGCACAGTGAAGAGGTAAGTCC < 41bp 0.517622069759142 0.729481564229668 NA NA prediction 0.423718988941052 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69791495 chr14:69791494 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_28096 0 0 0 0 2 GALNT16 chr14:69791409 3'AG 69791409 Downstream 86bp 25577 chr14 69791494 69791494 1 + C T UCEC 69791495 + 69791475 69791515 41 GGCCCGTTCCACCCTGCTGCGCACAGTGAAGAGGTAAGTCC GGCCCGTTCCACCCTGCTGTGCACAGTGAAGAGGTAAGTCC < 41bp 0.517622069759142 0.729481564229668 NA NA prediction 0.423718988941052 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69791495 chr14:69791494 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_28096 0 0 0 0 2 GALNT16 chr14:69791507 5'GT 69791507 Upstream 14bp 25578 chr6 139186191 139186191 1 + C T SKCM 139186192 + 139186172 139186212 41 CCTCTTCCATCTACTTCTGCGAATCGAAGCTACAGACGTGG CCTCTTCCATCTACTTCTGTGAATCGAAGCTACAGACGTGG < 41bp 0.504189599519941 0.716040681816405 NA NA prediction 0.423702164592927 Functional Gain - ECT2L ENSG00000203734 CDS Human protein_coding chr6:139186192 chr6:139186191 synonymous SNV . 0 20 hm7G_associated_SNPs_28100 0 0 0 0 1 ECT2L chr6:139186133 3'AG 139186133 Downstream 59bp 25579 chr15 91454441 91454441 1 + C T COAD 91454442 + 91454422 91454462 41 GACGCCCTCCCAGAGCGCACGGTGATCCAGCTGGATTCCTC GACGCCCTCCCAGAGCGCATGGTGATCCAGCTGGATTCCTC < 41bp 0.498392375277609 0.711849203132475 NA NA prediction 0.423698406264951 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91454442 chr15:91454441 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_28102 0 0 1 0 2 MAN2A2 chr15:91454401 3'AG 91454401 Downstream 41bp 25580 chr15 91454441 91454441 1 + C T COAD 91454442 + 91454422 91454462 41 GACGCCCTCCCAGAGCGCACGGTGATCCAGCTGGATTCCTC GACGCCCTCCCAGAGCGCATGGTGATCCAGCTGGATTCCTC < 41bp 0.498392375277609 0.711849203132475 NA NA prediction 0.423698406264951 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91454442 chr15:91454441 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_28102 0 0 1 0 2 MAN2A2 chr15:91454468 5'GT 91454468 Upstream 28bp 25581 chr12 122670817 122670817 1 + G A SKCM 122670818 + 122670798 122670838 41 CCAATCGAATCAAGGAGGTGGATGCCACCAATCTGCCCCCC CCAATCGAATCAAGGAGGTAGATGCCACCAATCTGCCCCCC < 41bp 0.520933068425657 0.732776845974464 NA NA prediction 0.423687555097613 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122670818 chr12:122670817 synonymous SNV . 0 20 hm7G_associated_SNPs_28103 0 0 0 0 2 LRRC43 chr12:122670737 3'AG 122670737 Downstream 81bp 25582 chr12 122670817 122670817 1 + G A SKCM 122670818 + 122670798 122670838 41 CCAATCGAATCAAGGAGGTGGATGCCACCAATCTGCCCCCC CCAATCGAATCAAGGAGGTAGATGCCACCAATCTGCCCCCC < 41bp 0.520933068425657 0.732776845974464 NA NA prediction 0.423687555097613 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122670818 chr12:122670817 synonymous SNV . 0 20 hm7G_associated_SNPs_28103 0 0 0 0 2 LRRC43 chr12:122670847 5'GT 122670847 Upstream 31bp 25583 chr8 76456180 76456180 1 + C T STAD 76456181 + 76456161 76456201 41 GTGCAAGGGTTTCTTCAGACGCAGCATTCGTAAGAGTCACG GTGCAAGGGTTTCTTCAGATGCAGCATTCGTAAGAGTCACG < 41bp 0.517229145878698 0.729071766195782 NA NA prediction 0.423685240634168 Functional Gain - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76456181 chr8:76456180 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28104 0 0 0 0 1 HNF4G chr8:76456214 5'GT 76456214 Upstream 35bp 25584 chr12 3030002 3030002 1 + G T UCEC 3030003 + 3029983 3030023 41 CAGCCCAATCCAGAAGCCAGGCTACGTCGGGCAAAGCCAAG CAGCCCAATCCAGAAGCCATGCTACGTCGGGCAAAGCCAAG < 41bp 0.701208186409991 0.91303799093805 NA NA prediction 0.423659609056116 Functional Gain - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3030003 chr12:3030002 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_28112 0 0 1 0 2 TULP3 chr12:3029929 3'AG 3029929 Downstream 74bp 25585 chr12 3030002 3030002 1 + G T UCEC 3030003 + 3029983 3030023 41 CAGCCCAATCCAGAAGCCAGGCTACGTCGGGCAAAGCCAAG CAGCCCAATCCAGAAGCCATGCTACGTCGGGCAAAGCCAAG < 41bp 0.701208186409991 0.91303799093805 NA NA prediction 0.423659609056116 Functional Gain - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3030003 chr12:3030002 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_28112 0 0 1 0 2 TULP3 chr12:3030088 5'GT 3030088 Upstream 87bp 25586 chr1 33760803 33760803 1 + G A UCEC 33760804 + 33760784 33760824 41 AAGTGTCCCAACTGCTACCGGGCCTATTCGGACTCCGCTTC AAGTGTCCCAACTGCTACCAGGCCTATTCGGACTCCGCTTC < 41bp 0.525138778589029 0.736963051138342 NA NA prediction 0.423648545098625 Functional Gain - ZNF362 ENSG00000160094 CDS Human protein_coding chr1:33760804 chr1:33760803 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28113 0 0 1 0 1 ZNF362 chr1:33760748 3'AG 33760748 Downstream 56bp 25587 chr19 15760898 15760898 1 + C T UCS 15760899 + 15760879 15760919 41 TGCCGTCATCCAGGAGCGGCGCCGCACCCTCCCTAGCCAGG TGCCGTCATCCAGGAGCGGTGCCGCACCCTCCCTAGCCAGG < 41bp 0.511898897681352 0.723723081674598 NA NA prediction 0.423648367986492 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15760899 chr19:15760898 nonsynonymous SNV 0.120 1 20 hm7G_associated_SNPs_28114 0 0 1 0 1 CYP4F3 chr19:15760993 5'GT 15760993 Upstream 96bp 25588 chr9 117396107 117396107 1 + G A GBM 117396108 + 117396088 117396128 41 GAGCCCTCCTGAGACACCGGGTGCTGCTGGGGGTGACAGAC GAGCCCTCCTGAGACACCGAGTGCTGCTGGGGGTGACAGAC < 41bp 0.500005582640162 0.711826426787973 NA NA prediction 0.423641688295623 Functional Gain - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117396108 chr9:117396107 synonymous SNV . 0 20 hm7G_associated_SNPs_28116 0 0 0 0 2 TMEM268 chr9:117396048 3'AG 117396048 Downstream 60bp 25589 chr9 117396107 117396107 1 + G A GBM 117396108 + 117396088 117396128 41 GAGCCCTCCTGAGACACCGGGTGCTGCTGGGGGTGACAGAC GAGCCCTCCTGAGACACCGAGTGCTGCTGGGGGTGACAGAC < 41bp 0.500005582640162 0.711826426787973 NA NA prediction 0.423641688295623 Functional Gain - TMEM268 ENSG00000157693 CDS Human protein_coding chr9:117396108 chr9:117396107 synonymous SNV . 0 20 hm7G_associated_SNPs_28116 0 0 0 0 2 TMEM268 chr9:117396158 5'GT 117396158 Upstream 52bp 25590 chr15 42139554 42139554 1 + G A rs144155818 42139555 + 42139535 42139575 41 CAGTTGCAGCTCCTGGGCCGGTTCTGCCAGGAGCAGGGGAT CAGTTGCAGCTCCTGGGCCAGTTCTGCCAGGAGCAGGGGAT < 41bp 0.50513699817813 0.716956434432029 NA NA prediction 0.423638872507799 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42139555 chr15:42139554 nonsynonymous SNV 0.329 0 20 hm7G_associated_SNPs_28117 0 0 0 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42139535 3'AG 42139535 Downstream 20bp 25591 chr20 1277825 1277825 1 + C T UCEC 1277826 + 1277806 1277846 41 TGAGCGTGCGGGATGCCTACGGCACCTCTTCGCTCAGCAGC TGAGCGTGCGGGATGCCTATGGCACCTCTTCGCTCAGCAGC < 41bp 0.498320662924058 0.711819346741714 NA NA prediction 0.423638693483428 Functional Gain - SNPH ENSG00000101298 CDS Human protein_coding chr20:1277826 chr20:1277825 synonymous SNV . 0 20 hm7G_associated_SNPs_28118 0 0 0 0 2 SNPH chr20:1277789 3'AG 1277789 Downstream 37bp 25592 chr20 1277825 1277825 1 + C T UCEC 1277826 + 1277806 1277846 41 TGAGCGTGCGGGATGCCTACGGCACCTCTTCGCTCAGCAGC TGAGCGTGCGGGATGCCTATGGCACCTCTTCGCTCAGCAGC < 41bp 0.498320662924058 0.711819346741714 NA NA prediction 0.423638693483428 Functional Gain - SNPH ENSG00000101298 CDS Human protein_coding chr20:1277826 chr20:1277825 synonymous SNV . 0 20 hm7G_associated_SNPs_28118 0 0 0 0 2 SNPH chr20:1277896 5'GT 1277896 Upstream 72bp 25593 chr12 102301990 102301990 1 + C T STAD 102301991 + 102301971 102302011 41 CTGTGCCAGTGGTTCATGACGGGGGCGCTCTTTTGGCCTTT CTGTGCCAGTGGTTCATGATGGGGGCGCTCTTTTGGCCTTT < 41bp 0.507511623580355 0.719323733382946 NA NA prediction 0.423624219605181 Functional Gain - DRAM1 ENSG00000136048 CDS Human protein_coding chr12:102301991 chr12:102301990 synonymous SNV . 0 20 hm7G_associated_SNPs_28119 0 0 1 0 1 DRAM1 chr12:102301964 3'AG 102301964 Downstream 27bp 25594 chr19 40711849 40711849 1 + G A UCEC 40711850 + 40711830 40711870 41 CGTGAGGAGGAGCTGCTGCGGGCGGCACAGGAGCAGCGCTT CGTGAGGAGGAGCTGCTGCAGGCGGCACAGGAGCAGCGCTT < 41bp 0.557957669097569 0.769761703607486 NA NA prediction 0.423608069019833 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711850 chr19:40711849 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_28120 0 0 1 0 1 MAP3K10 chr19:40711818 3'AG 40711818 Downstream 32bp 25595 chr4 77652020 77652020 1 + C T ESCA 77652021 + 77652001 77652041 41 AATCTGGGGAGAAGCAACCCGATGCCAGCATGATGCAGATA AATCTGGGGAGAAGCAACCTGATGCCAGCATGATGCAGATA < 41bp 0.502705877732177 0.714507610210111 NA NA prediction 0.423603464955867 Functional Gain - SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77652021 chr4:77652020 synonymous SNV . 0 20 hm7G_associated_SNPs_28121 0 0 0 0 2 SHROOM3 chr4:77651957 3'AG 77651957 Downstream 64bp 25596 chr4 77652020 77652020 1 + C T ESCA 77652021 + 77652001 77652041 41 AATCTGGGGAGAAGCAACCCGATGCCAGCATGATGCAGATA AATCTGGGGAGAAGCAACCTGATGCCAGCATGATGCAGATA < 41bp 0.502705877732177 0.714507610210111 NA NA prediction 0.423603464955867 Functional Gain - SHROOM3 ENSG00000138771 CDS Human protein_coding chr4:77652021 chr4:77652020 synonymous SNV . 0 20 hm7G_associated_SNPs_28121 0 0 0 0 2 SHROOM3 chr4:77652088 5'GT 77652088 Upstream 69bp 25597 chr2 182360592 182360592 1 + G T OV 182360593 + 182360573 182360613 41 ATTTGACTGTGTTGAAAATGGATGGCCTTCTGTGTGCATAG ATTTGACTGTGTTGAAAATTGATGGCCTTCTGTGTGCATAG < 41bp 0.373701171553489 0.711799060238909 NA NA prediction 0.423598120477818 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182360593 chr2:182360592 stopgain 0.999 0 20 hm7G_associated_SNPs_28122 0 0 1 0 2 ITGA4 chr2:182360510 3'AG 182360510 Downstream 83bp 25598 chr2 182360592 182360592 1 + G T OV 182360593 + 182360573 182360613 41 ATTTGACTGTGTTGAAAATGGATGGCCTTCTGTGTGCATAG ATTTGACTGTGTTGAAAATTGATGGCCTTCTGTGTGCATAG < 41bp 0.373701171553489 0.711799060238909 NA NA prediction 0.423598120477818 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182360593 chr2:182360592 stopgain 0.999 0 20 hm7G_associated_SNPs_28122 0 0 1 0 2 ITGA4 chr2:182360664 5'GT 182360664 Upstream 73bp 25599 chr1 899325 899325 1 + G A UCEC 899326 + 899306 899346 41 ACGCTACGACCCCCTGACCGGAACGTGGACGTCCGTCGCTG ACGCTACGACCCCCTGACCAGAACGTGGACGTCCGTCGCTG < 41bp 0.539537085211506 0.751334435994204 NA NA prediction 0.423594701565397 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:899326 chr1:899325 nonsynonymous SNV 0.933 2 20 hm7G_associated_SNPs_28123 0 0 1 0 2 KLHL17 chr1:899300 3'AG 899300 Downstream 26bp 25600 chr1 899325 899325 1 + G A UCEC 899326 + 899306 899346 41 ACGCTACGACCCCCTGACCGGAACGTGGACGTCCGTCGCTG ACGCTACGACCCCCTGACCAGAACGTGGACGTCCGTCGCTG < 41bp 0.539537085211506 0.751334435994204 NA NA prediction 0.423594701565397 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:899326 chr1:899325 nonsynonymous SNV 0.933 2 20 hm7G_associated_SNPs_28123 0 0 1 0 2 KLHL17 chr1:899388 5'GT 899388 Upstream 64bp 25601 chr15 39879564 39879564 1 + C T GBM 39879565 + 39879545 39879585 41 CAGCCAGCGACTCTGCGGACGATGGCTGGTCTCCATGGTCC CAGCCAGCGACTCTGCGGATGATGGCTGGTCTCCATGGTCC < 41bp 0.494790939946951 0.711790973226183 NA NA prediction 0.423581946452365 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39879565 chr15:39879564 synonymous SNV . 0 20 hm7G_associated_SNPs_28125 0 0 1 0 1 THBS1 chr15:39879548 3'AG 39879548 Downstream 17bp 25602 chr19 35801017 35801017 1 + G A SKCM 35801018 + 35800998 35801038 41 CGCGTCATCTGCACCGCGAGGAACCTCTATGGCGCCAAGAG CGCGTCATCTGCACCGCGAAGAACCTCTATGGCGCCAAGAG < 41bp 0.50846108647625 0.720247113684274 NA NA prediction 0.423572054416048 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35801018 chr19:35801017 nonsynonymous SNV 0.968 0 20 hm7G_associated_SNPs_28127 0 0 0 0 1 MAG chr19:35801064 5'GT 35801064 Upstream 48bp 25603 chr9 139848656 139848656 1 + G T COAD 139848657 + 139848637 139848677 41 GGACCAGTTCATCTGCCTGGGCAGAGCTCAGGGCCTCTCGG GGACCAGTTCATCTGCCTGTGCAGAGCTCAGGGCCTCTCGG < 41bp 0.376015411250248 0.711784939273354 NA NA prediction 0.423569878546707 Functional Gain - LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848657 chr9:139848656 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_28128 0 0 0 0 2 LCN12 chr9:139848606 3'AG 139848606 Downstream 51bp 25604 chr9 139848656 139848656 1 + G T COAD 139848657 + 139848637 139848677 41 GGACCAGTTCATCTGCCTGGGCAGAGCTCAGGGCCTCTCGG GGACCAGTTCATCTGCCTGTGCAGAGCTCAGGGCCTCTCGG < 41bp 0.376015411250248 0.711784939273354 NA NA prediction 0.423569878546707 Functional Gain - LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848657 chr9:139848656 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_28128 0 0 0 0 2 LCN12 chr9:139848707 5'GT 139848707 Upstream 52bp 25605 chr9 131469628 131469628 1 + C T SKCM 131469629 + 131469609 131469649 41 ACCCGAGAGTTGCGGGCTGCGGTGCCTGGATACCCCCAGCC ACCCGAGAGTTGCGGGCTGTGGTGCCTGGATACCCCCAGCC < 41bp 0.501982817183794 0.713767288931336 NA NA prediction 0.423568943495083 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131469629 chr9:131469628 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_28129 0 0 0 0 1 PKN3 chr9:131469684 5'GT 131469684 Upstream 57bp 25606 chr20 61463533 61463533 1 + G A SKCM 61463534 + 61463514 61463554 41 AGGTGCCGCAGGCCCTAAGGGAGACCAGGTGAGCTGGGCAC AGGTGCCGCAGGCCCTAAGAGAGACCAGGTGAGCTGGGCAC < 41bp 0.512124445839816 0.72390727828831 NA NA prediction 0.423565664896988 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61463534 chr20:61463533 nonsynonymous SNV 0.990 5 20 hm7G_associated_SNPs_28131 0 0 1 0 1 COL9A3 chr20:61463541 5'GT 61463541 Upstream 9bp 25607 chr3 38043243 38043243 1 + G A SKCM 38043244 + 38043224 38043264 41 CCCTGAACAGCAACGCTGAGGAACTAGATGTCATGTATGGT CCCTGAACAGCAACGCTGAAGAACTAGATGTCATGTATGGT < 41bp 0.506217642079968 0.717996729878757 NA NA prediction 0.423558175597577 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38043244 chr3:38043243 synonymous SNV . 0 20 hm7G_associated_SNPs_28133 0 0 0 0 1 VILL chr3:38043193 3'AG 38043193 Downstream 51bp 25608 chr11 113196281 113196281 1 + G T UCEC 113196282 + 113196262 113196302 41 GAATGAAGCATTTGCTGAAGGCAATTATGAAACAGCTATCC GAATGAAGCATTTGCTGAATGCAATTATGAAACAGCTATCC < 41bp 0.633444603080516 0.845221413653122 NA NA prediction 0.423553621145212 Functional Gain - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113196282 chr11:113196281 nonsynonymous SNV 0.018 4 20 hm7G_associated_SNPs_28134 0 0 0 0 2 TTC12 chr11:113196246 3'AG 113196246 Downstream 36bp 25609 chr11 113196281 113196281 1 + G T UCEC 113196282 + 113196262 113196302 41 GAATGAAGCATTTGCTGAAGGCAATTATGAAACAGCTATCC GAATGAAGCATTTGCTGAATGCAATTATGAAACAGCTATCC < 41bp 0.633444603080516 0.845221413653122 NA NA prediction 0.423553621145212 Functional Gain - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113196282 chr11:113196281 nonsynonymous SNV 0.018 4 20 hm7G_associated_SNPs_28134 0 0 0 0 2 TTC12 chr11:113196367 5'GT 113196367 Upstream 87bp 25610 chr10 121675375 121675375 1 + G T LIHC 121675376 + 121675356 121675396 41 TTCATTGGCATAGTTCTTTGGGTGGGGACGCCACAGGTGTG TTCATTGGCATAGTTCTTTTGGTGGGGACGCCACAGGTGTG < 41bp 0.691124842195402 0.902898285394898 NA NA prediction 0.423546886398991 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121675376 chr10:121675375 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_28135 0 0 1 0 1 SEC23IP chr10:121675401 5'GT 121675401 Upstream 27bp 25611 chr1 236918328 236918328 1 + C T BRCA 236918329 + 236918309 236918349 41 CCCCCCTCAGGAGATTGCCCGGAGCTCCATCCAGATCACAG CCCCCCTCAGGAGATTGCCTGGAGCTCCATCCAGATCACAG < 41bp 0.50367742996648 0.715447093388671 NA NA prediction 0.423539326844381 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236918329 chr1:236918328 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_28136 1 0 0 0 1 ACTN2 chr1:236918319 3'AG 236918319 Downstream 10bp 25612 chrX 69672577 69672577 1 + C T CESC 69672578 + 69672558 69672598 41 GAGGTGGGCCTGGCCGCTCCGCTCCCTGCGGCCCGGAGGGG GAGGTGGGCCTGGCCGCTCTGCTCCCTGCGGCCCGGAGGGG < 41bp 0.505577916517632 0.717342567580036 NA NA prediction 0.423529302124808 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69672578 chrX:69672577 nonsynonymous SNV 0.966 0 20 hm7G_associated_SNPs_28137 0 0 0 0 1 DLG3 chrX:69672605 5'GT 69672605 Upstream 29bp 25613 chr16 50349306 50349306 1 + G T UCEC 50349307 + 50349287 50349327 41 CACCATCCTCCAGGGCCTCGGGTACTCTTGTGAATGCCGTG CACCATCCTCCAGGGCCTCTGGTACTCTTGTGAATGCCGTG < 41bp 0.376072384187302 0.711762087873522 NA NA prediction 0.423524175747044 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50349307 chr16:50349306 nonsynonymous SNV 0.033 4 20 hm7G_associated_SNPs_28139 0 0 0 0 1 ADCY7 chr16:50349270 3'AG 50349270 Downstream 37bp 25614 chr19 46173937 46173937 1 + G A UCEC 46173938 + 46173918 46173958 41 GGGAGCTGTACCAGCGCTGGGAACGGTACCGCAGGGAGTGC GGGAGCTGTACCAGCGCTGAGAACGGTACCGCAGGGAGTGC < 41bp 0.548779970126278 0.760541232158684 NA NA prediction 0.423522524064812 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173938 chr19:46173937 stopgain 1.000 0 20 hm7G_associated_SNPs_28140 0 0 1 0 2 GIPR chr19:46173893 3'AG 46173893 Downstream 45bp 25615 chr19 46173937 46173937 1 + G A UCEC 46173938 + 46173918 46173958 41 GGGAGCTGTACCAGCGCTGGGAACGGTACCGCAGGGAGTGC GGGAGCTGTACCAGCGCTGAGAACGGTACCGCAGGGAGTGC < 41bp 0.548779970126278 0.760541232158684 NA NA prediction 0.423522524064812 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46173938 chr19:46173937 stopgain 1.000 0 20 hm7G_associated_SNPs_28140 0 0 1 0 2 GIPR chr19:46173992 5'GT 46173992 Upstream 56bp 25616 chr11 69954481 69954481 1 + C T COAD 69954482 + 69954462 69954502 41 TATGAGATCTTGAAGAGAACGACGTGTACAAAGGCCAAGTA TATGAGATCTTGAAGAGAATGACGTGTACAAAGGCCAAGTA < 41bp 0.508027315804924 0.719786758280058 NA NA prediction 0.423518884950267 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69954482 chr11:69954481 nonsynonymous SNV 0.637 4 20 hm7G_associated_SNPs_28141 0 0 0 0 1 ANO1 chr11:69954510 5'GT 69954510 Upstream 30bp 25617 chr12 99071231 99071231 1 + C T UCEC 99071232 + 99071212 99071252 41 AAACATCACGAATCTTTCCCGCTTAGTTGTCCGCCCCCACA AAACATCACGAATCTTTCCTGCTTAGTTGTCCGCCCCCACA < 41bp 0.49923053678146 0.711757442259211 NA NA prediction 0.423514884518423 Functional Gain - APAF1 ENSG00000120868 CDS Human protein_coding chr12:99071232 chr12:99071231 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28142 0 0 1 0 2 APAF1 chr12:99071203 3'AG 99071203 Downstream 29bp 25618 chr12 99071231 99071231 1 + C T UCEC 99071232 + 99071212 99071252 41 AAACATCACGAATCTTTCCCGCTTAGTTGTCCGCCCCCACA AAACATCACGAATCTTTCCTGCTTAGTTGTCCGCCCCCACA < 41bp 0.49923053678146 0.711757442259211 NA NA prediction 0.423514884518423 Functional Gain - APAF1 ENSG00000120868 CDS Human protein_coding chr12:99071232 chr12:99071231 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28142 0 0 1 0 2 APAF1 chr12:99071329 5'GT 99071329 Upstream 99bp 25619 chr16 2988367 2988367 1 + C T CESC 2988368 + 2988348 2988388 41 CCACCGCATCATGGTCATGCGCAGCCACTGCCATCAGCCTG CCACCGCATCATGGTCATGTGCAGCCACTGCCATCAGCCTG < 41bp 0.50197942919209 0.71373580231278 NA NA prediction 0.423512746241379 Functional Gain - FLYWCH1 ENSG00000059122 CDS Human protein_coding chr16:2988368 chr16:2988367 nonsynonymous SNV 0.148 3 20 hm7G_associated_SNPs_28143 0 0 0 0 1 FLYWCH1 chr16:2988457 5'GT 2988457 Upstream 91bp 25620 chr17 72345413 72345413 1 + C T LGG 72345414 + 72345394 72345434 41 CGAGATCCAGCGACTCAAGCGCAAGATTGATGAGCAGACTG CGAGATCCAGCGACTCAAGTGCAAGATTGATGAGCAGACTG < 41bp 0.510483773290132 0.722239704707526 NA NA prediction 0.423511862834786 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345414 chr17:72345413 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_28144 0 0 0 0 2 KIF19 chr17:72345323 3'AG 72345323 Downstream 91bp 25621 chr17 72345413 72345413 1 + C T LGG 72345414 + 72345394 72345434 41 CGAGATCCAGCGACTCAAGCGCAAGATTGATGAGCAGACTG CGAGATCCAGCGACTCAAGTGCAAGATTGATGAGCAGACTG < 41bp 0.510483773290132 0.722239704707526 NA NA prediction 0.423511862834786 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345414 chr17:72345413 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_28144 0 0 0 0 2 KIF19 chr17:72345488 5'GT 72345488 Upstream 76bp 25622 chr1 23233284 23233284 1 + C T SKCM 23233285 + 23233265 23233305 41 GCCATCAAGACGCTCAAGTCGGGCTACACGGAGAAGCAGCG GCCATCAAGACGCTCAAGTTGGGCTACACGGAGAAGCAGCG < 41bp 0.516834042397197 0.728583794940668 NA NA prediction 0.423499505086941 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23233285 chr1:23233284 nonsynonymous SNV 0.957 3 20 hm7G_associated_SNPs_28149 0 0 0 0 1 EPHB2 chr1:23233203 3'AG 23233203 Downstream 82bp 25623 chr9 71006576 71006576 1 + C T ESCA 71006577 + 71006557 71006597 41 CCAAACCTGACATATGCAACGACTCTTCTGGAAGCAATGAA CCAAACCTGACATATGCAATGACTCTTCTGGAAGCAATGAA < 41bp 0.502144507171453 0.713888038745604 NA NA prediction 0.423487063148301 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71006577 chr9:71006576 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_28150 0 0 0 0 1 PGM5 chr9:71006640 5'GT 71006640 Upstream 65bp 25624 chr2 201761925 201761925 1 + G T LUSC 201761926 + 201761906 201761946 41 TCGCTTAGCCCTTGGGGTGGGGAGAACCTTAGGTAAATATA TCGCTTAGCCCTTGGGGTGTGGAGAACCTTAGGTAAATATA < 41bp 0.685120304824536 0.896858654232226 NA NA prediction 0.42347669881538 Functional Gain - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201761926 chr2:201761925 nonsynonymous SNV 0.933 4 20 hm7G_associated_SNPs_28151 0 0 1 0 1 NIF3L1 chr2:201761937 5'GT 201761937 Upstream 13bp 25625 chr2 217300070 217300070 1 + C T BLCA 217300071 + 217300051 217300091 41 TCATCCACAGGCCTTCCTTCGGTGGCTGCCATCTCTGAGCC TCATCCACAGGCCTTCCTTTGGTGGCTGCCATCTCTGAGCC < 41bp 0.496987442013394 0.711735611185908 NA NA prediction 0.423471222371816 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217300071 chr2:217300070 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_28155 0 0 1 1 1 SMARCAL1 chr2:217300061 3'AG 217300061 Downstream 10bp 25626 chr19 46733409 46733409 1 + G A rs75105417 46733410 + 46733390 46733430 41 CAGGCTCCTCTGCTCACACGGAGCCCCAGGTGAGCCCAGGA CAGGCTCCTCTGCTCACACAGAGCCCCAGGTGAGCCCAGGA < 41bp 0.50849766189842 0.720232079828234 NA NA prediction 0.423468835859628 Functional Gain - IGFL1 ENSG00000188293 CDS Human protein_coding chr19:46733410 chr19:46733409 nonsynonymous SNV 0.198 2 20 hm7G_associated_SNPs_28156 0 0 0 0 2 IGFL1 chr19:46733365 3'AG 46733365 Downstream 45bp 25627 chr19 46733409 46733409 1 + G A rs75105417 46733410 + 46733390 46733430 41 CAGGCTCCTCTGCTCACACGGAGCCCCAGGTGAGCCCAGGA CAGGCTCCTCTGCTCACACAGAGCCCCAGGTGAGCCCAGGA < 41bp 0.50849766189842 0.720232079828234 NA NA prediction 0.423468835859628 Functional Gain - IGFL1 ENSG00000188293 CDS Human protein_coding chr19:46733410 chr19:46733409 nonsynonymous SNV 0.198 2 20 hm7G_associated_SNPs_28156 0 0 0 0 2 IGFL1 chr19:46733418 5'GT 46733418 Upstream 10bp 25628 chr19 55107366 55107366 1 + G A CESC 55107367 + 55107347 55107387 41 ACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGAC ACCTCTCCTCCGAGTGGTCAGCCCCCAGCGACCCCCTGGAC < 41bp 0.487173396801913 0.71172745513308 NA NA prediction 0.423454910266159 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55107367 chr19:55107366 synonymous SNV . 0 20 hm7G_associated_SNPs_28157 0 0 0 0 1 LILRA1 chr19:55107400 5'GT 55107400 Upstream 35bp 25629 chr16 67320969 67320969 1 + C T SKCM 67320970 + 67320950 67320990 41 CTTCGAGATCTGGTTCCGCCGCCGCAAGGCCAGGGACACCT CTTCGAGATCTGGTTCCGCTGCCGCAAGGCCAGGGACACCT < 41bp 0.509527598059629 0.721254139047074 NA NA prediction 0.423453081974889 Functional Gain - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67320970 chr16:67320969 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_28158 0 0 0 0 1 PLEKHG4 chr16:67320903 3'AG 67320903 Downstream 67bp 25630 chr14 24525548 24525548 1 + G A READ 24525549 + 24525529 24525569 41 CGGGGTGTTTGGGGAGAACGGGAGCTGTGTGCTGCATGCCC CGGGGTGTTTGGGGAGAACAGGAGCTGTGTGCTGCATGCCC < 41bp 0.515126146800671 0.726845976411102 NA NA prediction 0.423439659220862 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24525549 chr14:24525548 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_28160 0 0 0 0 1 CARMIL3 chr14:24525508 3'AG 24525508 Downstream 41bp 25631 chr2 48725646 48725646 1 + G T LUAD 48725647 + 48725627 48725667 41 TCAAGGTTCAACAGAGTTTGGAAAAGATTTCTAAACTGGAG TCAAGGTTCAACAGAGTTTTGAAAAGATTTCTAAACTGGAG < 41bp 0.684990632408305 0.89670572738251 NA NA prediction 0.423430189948409 Functional Gain - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48725647 chr2:48725646 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28163 0 0 1 0 1 PPP1R21 chr2:48725632 3'AG 48725632 Downstream 15bp 25632 chr12 57857826 57857826 1 + G A rs537495636 57857827 + 57857807 57857847 41 CCAAGCTAACCTCATGTCCGGCCCCCACAGTTATGGGCCAG CCAAGCTAACCTCATGTCCAGCCCCCACAGTTATGGGCCAG < 41bp 0.483018238832548 0.711715036407688 NA NA prediction 0.423430072815376 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57857827 chr12:57857826 nonsynonymous SNV 0.288 0 20 hm7G_associated_SNPs_28164 0 0 0 0 1 GLI1 chr12:57857782 3'AG 57857782 Downstream 45bp 25633 chrX 69456938 69456938 1 + G T LUSC 69456939 + 69456919 69456959 41 CTGAGCACAACTACCTCATGGGGGTTCACCCCCATGGCCTC CTGAGCACAACTACCTCATTGGGGTTCACCCCCATGGCCTC < 41bp 0.352553540446338 0.711713482704196 NA NA prediction 0.423426965408392 Functional Gain - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69456939 chrX:69456938 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_28165 0 0 0 0 1 AWAT1 chrX:69456894 3'AG 69456894 Downstream 45bp 25634 chr15 34642950 34642950 1 + G A SKCM 34642951 + 34642931 34642971 41 TGAAGCCCACTATGACCCTGGAGGAGGGACTGCCATTGGCT TGAAGCCCACTATGACCCTAGAGGAGGGACTGCCATTGGCT < 41bp 0.510253352080206 0.721966071202692 NA NA prediction 0.423425438244971 Functional Gain - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34642951 chr15:34642950 synonymous SNV . 0 20 hm7G_associated_SNPs_28167 0 0 0 0 2 NUTM1 chr15:34642905 3'AG 34642905 Downstream 46bp 25635 chr15 34642950 34642950 1 + G A SKCM 34642951 + 34642931 34642971 41 TGAAGCCCACTATGACCCTGGAGGAGGGACTGCCATTGGCT TGAAGCCCACTATGACCCTAGAGGAGGGACTGCCATTGGCT < 41bp 0.510253352080206 0.721966071202692 NA NA prediction 0.423425438244971 Functional Gain - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34642951 chr15:34642950 synonymous SNV . 0 20 hm7G_associated_SNPs_28167 0 0 0 0 2 NUTM1 chr15:34643033 5'GT 34643033 Upstream 84bp 25636 chr9 100819126 100819126 1 + G A BRCA 100819127 + 100819107 100819147 41 AGCTGTGTCCCGGGCGCTGGGTGGGCGGGCAACACCCGTGC AGCTGTGTCCCGGGCGCTGAGTGGGCGGGCAACACCCGTGC < 41bp 0.490602729037001 0.711712678512236 NA NA prediction 0.423425357024472 Functional Gain - NANS ENSG00000095380 CDS Human protein_coding chr9:100819127 chr9:100819126 stopgain 1.000 0 20 hm7G_associated_SNPs_28168 0 0 1 0 1 NANS chr9:100819222 5'GT 100819222 Upstream 97bp 25637 chr8 26481696 26481696 1 + C T UCEC 26481697 + 26481677 26481717 41 AGCCTGGGACAAGCCTGCTCGCTGCCTTTGACCAGTGGAGG AGCCTGGGACAAGCCTGCTTGCTGCCTTTGACCAGTGGAGG < 41bp 0.512210766939767 0.723920318028713 NA NA prediction 0.423419102177892 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26481697 chr8:26481696 synonymous SNV . 0 20 hm7G_associated_SNPs_28169 0 0 1 0 1 DPYSL2 chr8:26481659 3'AG 26481659 Downstream 38bp 25638 chr3 138183234 138183234 1 + G A rs199793277 138183235 + 138183215 138183255 41 CAGAGCAGCTGGCCCAGAAGGACAACTTTCTGGGGCTCCGA CAGAGCAGCTGGCCCAGAAAGACAACTTTCTGGGGCTCCGA < 41bp 0.510047817265329 0.721753563381308 NA NA prediction 0.42341149223196 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138183235 chr3:138183234 synonymous SNV . 0 20 hm7G_associated_SNPs_28170 0 0 0 0 1 ESYT3 chr3:138183187 3'AG 138183187 Downstream 48bp 25639 chrX 152835118 152835118 1 + C T COAD 152835119 + 152835099 152835139 41 TCAGGGTGCTGTGCGCCGGCGGTCTTCGGTCCTCAGCCAGC TCAGGGTGCTGTGCGCCGGTGGTCTTCGGTCCTCAGCCAGC < 41bp 0.499880914356924 0.711705545056265 NA NA prediction 0.423411090112531 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152835119 chrX:152835118 nonsynonymous SNV 0.761 3 20 hm7G_associated_SNPs_28171 0 0 0 0 3 ATP2B3 chrX:152835061 3'AG 152835061 Downstream 58bp 25640 chrX 152835118 152835118 1 + C T COAD 152835119 + 152835099 152835139 41 TCAGGGTGCTGTGCGCCGGCGGTCTTCGGTCCTCAGCCAGC TCAGGGTGCTGTGCGCCGGTGGTCTTCGGTCCTCAGCCAGC < 41bp 0.499880914356924 0.711705545056265 NA NA prediction 0.423411090112531 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152835119 chrX:152835118 nonsynonymous SNV 0.761 3 20 hm7G_associated_SNPs_28171 0 0 0 0 3 ATP2B3 chrX:152835147 5'GT 152835147 Upstream 30bp 25641 chrX 152835118 152835118 1 + C T COAD 152835119 + 152835099 152835139 41 TCAGGGTGCTGTGCGCCGGCGGTCTTCGGTCCTCAGCCAGC TCAGGGTGCTGTGCGCCGGTGGTCTTCGGTCCTCAGCCAGC < 41bp 0.499880914356924 0.711705545056265 NA NA prediction 0.423411090112531 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152835119 chrX:152835118 nonsynonymous SNV 0.761 3 20 hm7G_associated_SNPs_28171 0 0 0 0 3 ATP2B3 chrX:152835214 5'GT 152835214 Upstream 97bp 25642 chr15 75108595 75108595 1 + G A SKCM 75108596 + 75108576 75108616 41 CTGTCCCCTTCTCTGCCTGGGAAGTAGAGGTGCAGATGAGG CTGTCCCCTTCTCTGCCTGAGAAGTAGAGGTGCAGATGAGG < 41bp 0.490066733796021 0.711704714570934 NA NA prediction 0.423409429141868 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75108596 chr15:75108595 stopgain 0.969 1 20 hm7G_associated_SNPs_28172 0 0 0 0 2 LMAN1L chr15:75108498 3'AG 75108498 Downstream 98bp 25643 chr15 75108595 75108595 1 + G A SKCM 75108596 + 75108576 75108616 41 CTGTCCCCTTCTCTGCCTGGGAAGTAGAGGTGCAGATGAGG CTGTCCCCTTCTCTGCCTGAGAAGTAGAGGTGCAGATGAGG < 41bp 0.490066733796021 0.711704714570934 NA NA prediction 0.423409429141868 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75108596 chr15:75108595 stopgain 0.969 1 20 hm7G_associated_SNPs_28172 0 0 0 0 2 LMAN1L chr15:75108652 5'GT 75108652 Upstream 58bp 25644 chr11 8111695 8111695 1 + G A LUSC 8111696 + 8111676 8111716 41 AATGCAGATGGGCGGCCCCGGAGCCGGCGGGCCCGGCAGTC AATGCAGATGGGCGGCCCCAGAGCCGGCGGGCCCGGCAGTC < 41bp 0.526278841005877 0.737977433350836 NA NA prediction 0.423397184689919 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8111696 chr11:8111695 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_28174 0 0 1 0 2 TUB chr11:8111616 3'AG 8111616 Downstream 80bp 25645 chr11 8111695 8111695 1 + G A LUSC 8111696 + 8111676 8111716 41 AATGCAGATGGGCGGCCCCGGAGCCGGCGGGCCCGGCAGTC AATGCAGATGGGCGGCCCCAGAGCCGGCGGGCCCGGCAGTC < 41bp 0.526278841005877 0.737977433350836 NA NA prediction 0.423397184689919 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8111696 chr11:8111695 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_28174 0 0 1 0 2 TUB chr11:8111778 5'GT 8111778 Upstream 84bp 25646 chr1 79115906 79115906 1 + G T UCEC 79115907 + 79115887 79115927 41 GTGACAACTCGTTTGACATGGTTGCACGAAAAGATCCTGCA GTGACAACTCGTTTGACATTGTTGCACGAAAAGATCCTGCA < 41bp 0.385922636710081 0.711692761002364 NA NA prediction 0.423385522004728 Functional Gain - IFI44 ENSG00000137965 CDS Human protein_coding chr1:79115907 chr1:79115906 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_28175 0 0 0 0 1 IFI44 chr1:79115871 3'AG 79115871 Downstream 36bp 25647 chr16 1391843 1391843 1 + C T UCEC 1391844 + 1391824 1391864 41 GAGATTGAGGATGTGAGCACGGACCAGCTGCACCTGGACAT GAGATTGAGGATGTGAGCATGGACCAGCTGCACCTGGACAT < 41bp 0.503075725593564 0.714760462940227 NA NA prediction 0.423369474693327 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391844 chr16:1391843 nonsynonymous SNV 0.044 0 20 hm7G_associated_SNPs_28177 0 0 0 0 2 BAIAP3 chr16:1391823 3'AG 1391823 Downstream 21bp 25648 chr16 1391843 1391843 1 + C T UCEC 1391844 + 1391824 1391864 41 GAGATTGAGGATGTGAGCACGGACCAGCTGCACCTGGACAT GAGATTGAGGATGTGAGCATGGACCAGCTGCACCTGGACAT < 41bp 0.503075725593564 0.714760462940227 NA NA prediction 0.423369474693327 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1391844 chr16:1391843 nonsynonymous SNV 0.044 0 20 hm7G_associated_SNPs_28177 0 0 0 0 2 BAIAP3 chr16:1391867 5'GT 1391867 Upstream 25bp 25649 chr9 135919265 135919265 1 + G A STAD 135919266 + 135919246 135919286 41 CCCCCACCCATCTTCTCCCGGCTGGACGCCCCGGTGGACTA CCCCCACCCATCTTCTCCCAGCTGGACGCCCCGGTGGACTA < 41bp 0.536884948643629 0.748569244302256 NA NA prediction 0.423368591317253 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919266 chr9:135919265 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_28178 0 0 1 0 1 GTF3C5 chr9:135919313 5'GT 135919313 Upstream 49bp 25650 chr1 175096179 175096179 1 + C T rs56239270 175096180 + 175096160 175096200 41 CCCCCTCTGCTCAGATCCACGGCTACATTCTGACTTACCAG CCCCCTCTGCTCAGATCCATGGCTACATTCTGACTTACCAG < 41bp 0.499839601190543 0.711681694618292 NA NA prediction 0.423363389236584 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175096180 chr1:175096179 synonymous SNV . 0 20 hm7G_associated_SNPs_28179 0 0 0 0 2 TNN chr1:175096091 3'AG 175096091 Downstream 89bp 25651 chr1 175096179 175096179 1 + C T rs56239270 175096180 + 175096160 175096200 41 CCCCCTCTGCTCAGATCCACGGCTACATTCTGACTTACCAG CCCCCTCTGCTCAGATCCATGGCTACATTCTGACTTACCAG < 41bp 0.499839601190543 0.711681694618292 NA NA prediction 0.423363389236584 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175096180 chr1:175096179 synonymous SNV . 0 20 hm7G_associated_SNPs_28179 0 0 0 0 2 TNN chr1:175096221 5'GT 175096221 Upstream 43bp 25652 chrX 69459767 69459767 1 + G A SKCM 69459768 + 69459748 69459788 41 GGGCTCCTGCCATACTCCAGGCCTATTGTCACTGTGGGTGA GGGCTCCTGCCATACTCCAAGCCTATTGTCACTGTGGGTGA < 41bp 0.508457326942015 0.720138945223573 NA NA prediction 0.423363236563116 Functional Gain - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69459768 chrX:69459767 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_28180 0 0 0 0 1 AWAT1 chrX:69459784 5'GT 69459784 Upstream 18bp 25653 chr6 108492735 108492735 1 + C T COAD 108492736 + 108492716 108492756 41 ACTACGGGGTCTACGCCTGCGACGGCTGCTCAGGTTTTTTC ACTACGGGGTCTACGCCTGTGACGGCTGCTCAGGTTTTTTC < 41bp 0.494658417502658 0.711667390625664 NA NA prediction 0.423334781251327 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108492736 chr6:108492735 synonymous SNV . 0 20 hm7G_associated_SNPs_28186 0 0 0 0 2 NR2E1 chr6:108492662 3'AG 108492662 Downstream 74bp 25654 chr6 108492735 108492735 1 + C T COAD 108492736 + 108492716 108492756 41 ACTACGGGGTCTACGCCTGCGACGGCTGCTCAGGTTTTTTC ACTACGGGGTCTACGCCTGTGACGGCTGCTCAGGTTTTTTC < 41bp 0.494658417502658 0.711667390625664 NA NA prediction 0.423334781251327 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108492736 chr6:108492735 synonymous SNV . 0 20 hm7G_associated_SNPs_28186 0 0 0 0 2 NR2E1 chr6:108492807 5'GT 108492807 Upstream 73bp 25655 chr2 95713710 95713710 1 + G A PRAD 95713711 + 95713691 95713731 41 TCCTCCCCCGCAGATCTTCGGGGGCCTGGTGTGGATCCTGG TCCTCCCCCGCAGATCTTCAGGGGCCTGGTGTGGATCCTGG < 41bp 0.552866082500633 0.764533194601996 NA NA prediction 0.423334224202727 Functional Gain - MAL ENSG00000172005 CDS Human protein_coding chr2:95713711 chr2:95713710 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_28187 0 0 0 0 1 MAL chr2:95713704 3'AG 95713704 Downstream 7bp 25656 chr20 30795812 30795812 1 + G A SKCM 30795813 + 30795793 30795833 41 CTGCTTCTGCCGCTCCCGGGGATGCCTGCGGGCTCCTGGGA CTGCTTCTGCCGCTCCCGGAGATGCCTGCGGGCTCCTGGGA < 41bp 0.521727234513664 0.733389761450317 NA NA prediction 0.423325053873306 Functional Gain - POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30795813 chr20:30795812 nonsynonymous SNV 0.053 0 20 hm7G_associated_SNPs_28191 0 0 1 0 1 POFUT1 chr20:30795868 5'GT 30795868 Upstream 57bp 25657 chr16 55725901 55725901 1 + C T LIHC 55725902 + 55725882 55725922 41 TCCATGGCGTCACGCTGCCCGGAGCCTCCAATGGCATCAAT TCCATGGCGTCACGCTGCCTGGAGCCTCCAATGGCATCAAT < 41bp 0.527618962958663 0.739281396273562 NA NA prediction 0.423324866629799 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55725902 chr16:55725901 synonymous SNV . 0 20 hm7G_associated_SNPs_28192 0 0 0 0 2 SLC6A2 chr16:55725830 3'AG 55725830 Downstream 72bp 25658 chr16 55725901 55725901 1 + C T LIHC 55725902 + 55725882 55725922 41 TCCATGGCGTCACGCTGCCCGGAGCCTCCAATGGCATCAAT TCCATGGCGTCACGCTGCCTGGAGCCTCCAATGGCATCAAT < 41bp 0.527618962958663 0.739281396273562 NA NA prediction 0.423324866629799 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55725902 chr16:55725901 synonymous SNV . 0 20 hm7G_associated_SNPs_28192 0 0 0 0 2 SLC6A2 chr16:55725964 5'GT 55725964 Upstream 64bp 25659 chr17 9536299 9536299 1 + C T SKCM 9536300 + 9536280 9536320 41 GGATCGGCGTCACCGCCATCGCCACCACCAGTGACTGTAAA GGATCGGCGTCACCGCCATTGCCACCACCAGTGACTGTAAA < 41bp 0.511604486024081 0.723266582968975 NA NA prediction 0.423324193889788 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9536300 chr17:9536299 synonymous SNV . 0 20 hm7G_associated_SNPs_28193 0 0 0 0 2 CFAP52 chr17:9536205 3'AG 9536205 Downstream 95bp 25660 chr17 9536299 9536299 1 + C T SKCM 9536300 + 9536280 9536320 41 GGATCGGCGTCACCGCCATCGCCACCACCAGTGACTGTAAA GGATCGGCGTCACCGCCATTGCCACCACCAGTGACTGTAAA < 41bp 0.511604486024081 0.723266582968975 NA NA prediction 0.423324193889788 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9536300 chr17:9536299 synonymous SNV . 0 20 hm7G_associated_SNPs_28193 0 0 0 0 2 CFAP52 chr17:9536350 5'GT 9536350 Upstream 52bp 25661 chr8 2020542 2020542 1 + C T rs34842328 2020543 + 2020523 2020563 41 AAGTGCACCATGCTGGTGACGCCGGACCTGAAGCGGGTGCA AAGTGCACCATGCTGGTGATGCCGGACCTGAAGCGGGTGCA < 41bp 0.513939160330563 0.725600381844206 NA NA prediction 0.423322443027286 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2020543 chr8:2020542 nonsynonymous SNV 0.805 2 20 hm7G_associated_SNPs_28194 0 0 0 0 1 MYOM2 chr8:2020589 5'GT 2020589 Upstream 48bp 25662 chr19 41825509 41825509 1 + G A COAD 41825510 + 41825490 41825530 41 TTCAGTGATGAGCAGATGCGGTTCCGGGCCCCCCTGCTATA TTCAGTGATGAGCAGATGCAGTTCCGGGCCCCCCTGCTATA < 41bp 0.495549540386402 0.711655898371941 NA NA prediction 0.423311796743882 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41825510 chr19:41825509 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28196 0 0 1 0 1 CCDC97 chr19:41825479 3'AG 41825479 Downstream 31bp 25663 chr19 3908276 3908276 1 + C T UCEC 3908277 + 3908257 3908297 41 TCTCCTCAGGGTACTACGGCGAAGGCCTCAACGCCATCATC TCTCCTCAGGGTACTACGGTGAAGGCCTCAACGCCATCATC < 41bp 0.494557700635182 0.711655615598291 NA NA prediction 0.423311231196583 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3908277 chr19:3908276 synonymous SNV . 0 20 hm7G_associated_SNPs_28198 0 0 0 0 1 ATCAY chr19:3908368 5'GT 3908368 Upstream 93bp 25664 chr2 3425669 3425669 1 + G T ESCA 3425670 + 3425650 3425690 41 AGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGA AGAGCTGCAGAAACTGGAGTGCAGCAGTGGACCTGTGCGGA < 41bp 0.702169950358125 0.913824560945326 NA NA prediction 0.423309221174402 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3425670 chr2:3425669 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_28199 0 0 1 0 2 TRAPPC12 chr2:3425652 3'AG 3425652 Downstream 18bp 25665 chr2 3425669 3425669 1 + G T ESCA 3425670 + 3425650 3425690 41 AGAGCTGCAGAAACTGGAGGGCAGCAGTGGACCTGTGCGGA AGAGCTGCAGAAACTGGAGTGCAGCAGTGGACCTGTGCGGA < 41bp 0.702169950358125 0.913824560945326 NA NA prediction 0.423309221174402 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3425670 chr2:3425669 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_28199 0 0 1 0 2 TRAPPC12 chr2:3425765 5'GT 3425765 Upstream 97bp 25666 chr11 113860275 113860275 1 + G A SKCM 113860276 + 113860256 113860296 41 GCCCTCCCCCACCACCTCGGGAGGCCTCGCTGGCGGTGTGT GCCCTCCCCCACCACCTCGAGAGGCCTCGCTGGCGGTGTGT < 41bp 0.506330829371182 0.71798072780498 NA NA prediction 0.423299796867597 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113860276 chr11:113860275 synonymous SNV . 0 20 hm7G_associated_SNPs_28202 0 0 0 0 1 HTR3A chr11:113860187 3'AG 113860187 Downstream 89bp 25667 chr22 42209293 42209293 1 + G A UCEC 42209294 + 42209274 42209314 41 CCCACGTGGTGGAGAACACGGCCTTCTTCGGCGATGTGGTG CCCACGTGGTGGAGAACACAGCCTTCTTCGGCGATGTGGTG < 41bp 0.531068039329698 0.742707739128696 NA NA prediction 0.423279399597996 Functional Gain - CCDC134 ENSG00000100147 CDS Human protein_coding chr22:42209294 chr22:42209293 synonymous SNV . 0 20 hm7G_associated_SNPs_28208 0 0 1 0 1 CCDC134 chr22:42209268 3'AG 42209268 Downstream 26bp 25668 chr19 46823741 46823741 1 + C T UCEC 46823742 + 46823722 46823762 41 GTGCTGTCCCTGGAGCAAACGGAGCAACACTCTCGCAGACC GTGCTGTCCCTGGAGCAAATGGAGCAACACTCTCGCAGACC < 41bp 0.518007733287545 0.729646316486175 NA NA prediction 0.42327716639726 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46823742 chr19:46823741 nonsynonymous SNV 0.912 4 20 hm7G_associated_SNPs_28209 0 0 0 0 3 HIF3A chr19:46823700 3'AG 46823700 Downstream 42bp 25669 chr19 46823741 46823741 1 + C T UCEC 46823742 + 46823722 46823762 41 GTGCTGTCCCTGGAGCAAACGGAGCAACACTCTCGCAGACC GTGCTGTCCCTGGAGCAAATGGAGCAACACTCTCGCAGACC < 41bp 0.518007733287545 0.729646316486175 NA NA prediction 0.42327716639726 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46823742 chr19:46823741 nonsynonymous SNV 0.912 4 20 hm7G_associated_SNPs_28209 0 0 0 0 3 HIF3A chr19:46823704 3'AG 46823704 Downstream 38bp 25670 chr19 46823741 46823741 1 + C T UCEC 46823742 + 46823722 46823762 41 GTGCTGTCCCTGGAGCAAACGGAGCAACACTCTCGCAGACC GTGCTGTCCCTGGAGCAAATGGAGCAACACTCTCGCAGACC < 41bp 0.518007733287545 0.729646316486175 NA NA prediction 0.42327716639726 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46823742 chr19:46823741 nonsynonymous SNV 0.912 4 20 hm7G_associated_SNPs_28209 0 0 0 0 3 HIF3A chr19:46823818 5'GT 46823818 Upstream 78bp 25671 chr12 19489490 19489490 1 + C T STAD 19489491 + 19489471 19489511 41 AATATGATAAGTTAGAATACGATGTAACTGTTACCAGGAAC AATATGATAAGTTAGAATATGATGTAACTGTTACCAGGAAC < 41bp 0.499639610401961 0.711636905476254 NA NA prediction 0.423273810952507 Functional Gain - PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19489491 chr12:19489490 synonymous SNV . 0 20 hm7G_associated_SNPs_28210 0 0 1 0 2 PLEKHA5 chr12:19489449 3'AG 19489449 Downstream 42bp 25672 chr12 19489490 19489490 1 + C T STAD 19489491 + 19489471 19489511 41 AATATGATAAGTTAGAATACGATGTAACTGTTACCAGGAAC AATATGATAAGTTAGAATATGATGTAACTGTTACCAGGAAC < 41bp 0.499639610401961 0.711636905476254 NA NA prediction 0.423273810952507 Functional Gain - PLEKHA5 ENSG00000052126 CDS Human protein_coding chr12:19489491 chr12:19489490 synonymous SNV . 0 20 hm7G_associated_SNPs_28210 0 0 1 0 2 PLEKHA5 chr12:19489550 5'GT 19489550 Upstream 61bp 25673 chr2 48687257 48687257 1 + G T LUAD 48687258 + 48687238 48687278 41 AATCTCAGACTCTAGAAAAGGAAGCCAAGGAATGTCGACTT AATCTCAGACTCTAGAAAATGAAGCCAAGGAATGTCGACTT < 41bp 0.684308516610383 0.895943765458676 NA NA prediction 0.423270497696586 Functional Gain - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48687258 chr2:48687257 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_28211 0 0 1 0 2 PPP1R21 chr2:48687234 3'AG 48687234 Downstream 24bp 25674 chr2 48687257 48687257 1 + G T LUAD 48687258 + 48687238 48687278 41 AATCTCAGACTCTAGAAAAGGAAGCCAAGGAATGTCGACTT AATCTCAGACTCTAGAAAATGAAGCCAAGGAATGTCGACTT < 41bp 0.684308516610383 0.895943765458676 NA NA prediction 0.423270497696586 Functional Gain - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48687258 chr2:48687257 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_28211 0 0 1 0 2 PPP1R21 chr2:48687292 5'GT 48687292 Upstream 36bp 25675 chr19 45649713 45649713 1 + G A rs150189651 45649714 + 45649694 45649734 41 GGAAGCCAGTCAGGAATCCGGGCAGGAGACACTGTGACACT GGAAGCCAGTCAGGAATCCAGGCAGGAGACACTGTGACACT < 41bp 0.520103208109016 0.731738183200778 NA NA prediction 0.423269950183524 Functional Gain - PPP1R37 ENSG00000104866 CDS Human protein_coding chr19:45649714 chr19:45649713 nonsynonymous SNV 0.914 2 20 hm7G_associated_SNPs_28212 0 0 1 0 2 PPP1R37 chr19:45649648 3'AG 45649648 Downstream 66bp 25676 chr19 45649713 45649713 1 + G A rs150189651 45649714 + 45649694 45649734 41 GGAAGCCAGTCAGGAATCCGGGCAGGAGACACTGTGACACT GGAAGCCAGTCAGGAATCCAGGCAGGAGACACTGTGACACT < 41bp 0.520103208109016 0.731738183200778 NA NA prediction 0.423269950183524 Functional Gain - PPP1R37 ENSG00000104866 CDS Human protein_coding chr19:45649714 chr19:45649713 nonsynonymous SNV 0.914 2 20 hm7G_associated_SNPs_28212 0 0 1 0 2 PPP1R37 chr19:45649738 5'GT 45649738 Upstream 26bp 25677 chr20 37163794 37163794 1 + C T UCEC 37163795 + 37163775 37163815 41 AAGACTCAACTCCCAGTGGCGCCAAGACATGAGCATATCAC AAGACTCAACTCCCAGTGGTGCCAAGACATGAGCATATCAC < 41bp 0.518499924869075 0.730134068297376 NA NA prediction 0.423268286856601 Functional Gain - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37163795 chr20:37163794 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28213 0 0 1 0 3 RALGAPB chr20:37163717 3'AG 37163717 Downstream 78bp 25678 chr20 37163794 37163794 1 + C T UCEC 37163795 + 37163775 37163815 41 AAGACTCAACTCCCAGTGGCGCCAAGACATGAGCATATCAC AAGACTCAACTCCCAGTGGTGCCAAGACATGAGCATATCAC < 41bp 0.518499924869075 0.730134068297376 NA NA prediction 0.423268286856601 Functional Gain - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37163795 chr20:37163794 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28213 0 0 1 0 3 RALGAPB chr20:37163729 3'AG 37163729 Downstream 66bp 25679 chr20 37163794 37163794 1 + C T UCEC 37163795 + 37163775 37163815 41 AAGACTCAACTCCCAGTGGCGCCAAGACATGAGCATATCAC AAGACTCAACTCCCAGTGGTGCCAAGACATGAGCATATCAC < 41bp 0.518499924869075 0.730134068297376 NA NA prediction 0.423268286856601 Functional Gain - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37163795 chr20:37163794 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28213 0 0 1 0 3 RALGAPB chr20:37163850 5'GT 37163850 Upstream 57bp 25680 chr5 156741360 156741360 1 + G A SKCM 156741361 + 156741341 156741381 41 ATGCTCCCCAGGTGGTGACGGGCTCAGGGCTGGACAGCCAG ATGCTCCCCAGGTGGTGACAGGCTCAGGGCTGGACAGCCAG < 41bp 0.516028562206377 0.72765426787343 NA NA prediction 0.423251411334105 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156741361 chr5:156741360 synonymous SNV . 0 20 hm7G_associated_SNPs_28214 0 0 1 0 1 CYFIP2 chr5:156741352 3'AG 156741352 Downstream 9bp 25681 chr8 143562968 143562968 1 + G A SKCM 143562969 + 143562949 143562989 41 GGTGGAGATCTCTCAGGACGGGACCAGCTACAGTGGGGACC GGTGGAGATCTCTCAGGACAGGACCAGCTACAGTGGGGACC < 41bp 0.536177106303267 0.747798017971673 NA NA prediction 0.423241823336812 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143562969 chr8:143562968 nonsynonymous SNV 0.874 2 20 hm7G_associated_SNPs_28215 0 0 0 0 1 ADGRB1 chr8:143562878 3'AG 143562878 Downstream 91bp 25682 chr11 47431682 47431682 1 + G A SKCM 47431683 + 47431663 47431703 41 CCCTGGCTGTGGCATGGCGGGCCCAAGGCTCCTCTTCCTCA CCCTGGCTGTGGCATGGCGAGCCCAAGGCTCCTCTTCCTCA < 41bp 0.562305754702116 0.773922184022719 NA NA prediction 0.423232858641207 Functional Gain - SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47431683 chr11:47431682 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_28216 0 0 1 0 2 SLC39A13 chr11:47431617 3'AG 47431617 Downstream 66bp 25683 chr11 47431682 47431682 1 + G A SKCM 47431683 + 47431663 47431703 41 CCCTGGCTGTGGCATGGCGGGCCCAAGGCTCCTCTTCCTCA CCCTGGCTGTGGCATGGCGAGCCCAAGGCTCCTCTTCCTCA < 41bp 0.562305754702116 0.773922184022719 NA NA prediction 0.423232858641207 Functional Gain - SLC39A13 ENSG00000165915 CDS Human protein_coding chr11:47431683 chr11:47431682 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_28216 0 0 1 0 2 SLC39A13 chr11:47431638 3'AG 47431638 Downstream 45bp 25684 chr7 130021977 130021977 1 + C T COAD 130021978 + 130021958 130021998 41 TTCCTGGACCTGCTGGTGGCGGAGAACCCGCACCTTGTCAG TTCCTGGACCTGCTGGTGGTGGAGAACCCGCACCTTGTCAG < 41bp 0.51723569636672 0.728847206430827 NA NA prediction 0.423223020128213 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021978 chr7:130021977 nonsynonymous SNV 0.008 1 20 hm7G_associated_SNPs_28217 0 0 0 0 2 CPA1 chr7:130021949 3'AG 130021949 Downstream 29bp 25685 chr7 130021977 130021977 1 + C T COAD 130021978 + 130021958 130021998 41 TTCCTGGACCTGCTGGTGGCGGAGAACCCGCACCTTGTCAG TTCCTGGACCTGCTGGTGGTGGAGAACCCGCACCTTGTCAG < 41bp 0.51723569636672 0.728847206430827 NA NA prediction 0.423223020128213 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021978 chr7:130021977 nonsynonymous SNV 0.008 1 20 hm7G_associated_SNPs_28217 0 0 0 0 2 CPA1 chr7:130022050 5'GT 130022050 Upstream 74bp 25686 chr13 113814380 113814380 1 + G A SKCM 113814381 + 113814361 113814401 41 TGGTGAGGTGGAAGCGTGCGGGCTCCTATCTTCTGGAAGAA TGGTGAGGTGGAAGCGTGCAGGCTCCTATCTTCTGGAAGAA < 41bp 0.486485995386473 0.711608432537068 NA NA prediction 0.423216865074136 Functional Gain - PROZ ENSG00000126231 CDS Human protein_coding chr13:113814381 chr13:113814380 synonymous SNV . 0 20 hm7G_associated_SNPs_28219 0 0 0 0 1 PROZ chr13:113814328 3'AG 113814328 Downstream 53bp 25687 chr12 7170342 7170342 1 + C T CESC 7170343 + 7170323 7170363 41 TCCAATGAAGAGCGTTTTACGGGGTTTGCTGCATACTATGT TCCAATGAAGAGCGTTTTATGGGGTTTGCTGCATACTATGT < 41bp 0.506540117480903 0.718146696282851 NA NA prediction 0.423213157603896 Functional Gain - C1S ENSG00000182326 CDS Human protein_coding chr12:7170343 chr12:7170342 nonsynonymous SNV 0.831 4 20 hm7G_associated_SNPs_28220 0 0 0 0 1 C1S chr12:7170371 5'GT 7170371 Upstream 30bp 25688 chr3 52812973 52812973 1 + C T LGG 52812974 + 52812954 52812994 41 GCAGTACAGCAGATGGAAACGCATTTATCGGAGACATAAAG GCAGTACAGCAGATGGAAATGCATTTATCGGAGACATAAAG < 41bp 0.494465314429593 0.711598624388146 NA NA prediction 0.423197248776292 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812974 chr3:52812973 synonymous SNV . 0 20 hm7G_associated_SNPs_28221 0 0 0 0 2 ITIH1 chr3:52812958 3'AG 52812958 Downstream 16bp 25689 chr3 52812973 52812973 1 + C T LGG 52812974 + 52812954 52812994 41 GCAGTACAGCAGATGGAAACGCATTTATCGGAGACATAAAG GCAGTACAGCAGATGGAAATGCATTTATCGGAGACATAAAG < 41bp 0.494465314429593 0.711598624388146 NA NA prediction 0.423197248776292 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812974 chr3:52812973 synonymous SNV . 0 20 hm7G_associated_SNPs_28221 0 0 0 0 2 ITIH1 chr3:52813062 5'GT 52813062 Upstream 90bp 25690 chr8 75761361 75761361 1 + G T UCEC 75761362 + 75761342 75761382 41 TTCCCTTCTAGGGGCAATTGGATTGGAGAAGCACCATATAA TTCCCTTCTAGGGGCAATTTGATTGGAGAAGCACCATATAA < 41bp 0.661442614435843 0.873041053209683 NA NA prediction 0.42319687754768 Functional Gain - PI15 ENSG00000137558 CDS Human protein_coding chr8:75761362 chr8:75761361 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_28222 0 0 0 0 1 PI15 chr8:75761353 3'AG 75761353 Downstream 9bp 25691 chr19 41078000 41078000 1 + C T OV 41078001 + 41077981 41078021 41 ACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGGAA ACTCCAAGGGCCCGGCATCTGGGAGCACACACGGTGGGGAA < 41bp 0.507400784747354 0.718997343953346 NA NA prediction 0.423193118411985 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41078001 chr19:41078000 synonymous SNV . 0 20 hm7G_associated_SNPs_28223 0 0 1 0 2 SPTBN4 chr19:41077925 3'AG 41077925 Downstream 76bp 25692 chr19 41078000 41078000 1 + C T OV 41078001 + 41077981 41078021 41 ACTCCAAGGGCCCGGCATCCGGGAGCACACACGGTGGGGAA ACTCCAAGGGCCCGGCATCTGGGAGCACACACGGTGGGGAA < 41bp 0.507400784747354 0.718997343953346 NA NA prediction 0.423193118411985 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41078001 chr19:41078000 synonymous SNV . 0 20 hm7G_associated_SNPs_28223 0 0 1 0 2 SPTBN4 chr19:41078098 5'GT 41078098 Upstream 99bp 25693 chr15 91493385 91493385 1 + C T COAD 91493386 + 91493366 91493406 41 ACGGGCTTGTTCCTACAGGCGCTGATCCCGCTGGCCCTGGA ACGGGCTTGTTCCTACAGGTGCTGATCCCGCTGGCCCTGGA < 41bp 0.502951998772623 0.714545944551664 NA NA prediction 0.423187891558081 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91493386 chr15:91493385 nonsynonymous SNV 0.019 1 20 hm7G_associated_SNPs_28225 0 0 1 0 1 UNC45A chr15:91493384 3'AG 91493384 Downstream 2bp 25694 chr11 124739941 124739941 1 + C T COAD 124739942 + 124739922 124739962 41 GCGGGAGAACGGGAGAGTGCGGCAGCTGAAGTCATGGTACT GCGGGAGAACGGGAGAGTGTGGCAGCTGAAGTCATGGTACT < 41bp 0.514951349740868 0.726545208576831 NA NA prediction 0.423187717671926 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124739942 chr11:124739941 nonsynonymous SNV 0.536 0 20 hm7G_associated_SNPs_28226 0 0 0 0 2 ROBO3 chr11:124739844 3'AG 124739844 Downstream 98bp 25695 chr11 124739941 124739941 1 + C T COAD 124739942 + 124739922 124739962 41 GCGGGAGAACGGGAGAGTGCGGCAGCTGAAGTCATGGTACT GCGGGAGAACGGGAGAGTGTGGCAGCTGAAGTCATGGTACT < 41bp 0.514951349740868 0.726545208576831 NA NA prediction 0.423187717671926 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124739942 chr11:124739941 nonsynonymous SNV 0.536 0 20 hm7G_associated_SNPs_28226 0 0 0 0 2 ROBO3 chr11:124739964 5'GT 124739964 Upstream 24bp 25696 chr6 46721557 46721557 1 + G T UCEC 46721558 + 46721538 46721578 41 TCATTTTGCAGCAGAAGCAGGCCATCTGAATATACTCAAAA TCATTTTGCAGCAGAAGCATGCCATCTGAATATACTCAAAA < 41bp 0.695185105930438 0.906777405914289 NA NA prediction 0.423184599967701 Functional Gain - ANKRD66 ENSG00000230062 CDS Human protein_coding chr6:46721558 chr6:46721557 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_28227 0 0 0 0 1 ANKRD66 chr6:46721459 3'AG 46721459 Downstream 99bp 25697 chr17 76071287 76071287 1 + C T CESC 76071288 + 76071268 76071308 41 CCGACCATAATGGAATGGCCGCCAAGCCCCTCGGCTGCCGC CCGACCATAATGGAATGGCTGCCAAGCCCCTCGGCTGCCGC < 41bp 0.493864564297882 0.711589258119999 NA NA prediction 0.423178516239998 Functional Gain - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76071288 chr17:76071287 synonymous SNV . 0 20 hm7G_associated_SNPs_28228 0 0 1 0 2 TNRC6C chr17:76071217 3'AG 76071217 Downstream 71bp 25698 chr17 76071287 76071287 1 + C T CESC 76071288 + 76071268 76071308 41 CCGACCATAATGGAATGGCCGCCAAGCCCCTCGGCTGCCGC CCGACCATAATGGAATGGCTGCCAAGCCCCTCGGCTGCCGC < 41bp 0.493864564297882 0.711589258119999 NA NA prediction 0.423178516239998 Functional Gain - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76071288 chr17:76071287 synonymous SNV . 0 20 hm7G_associated_SNPs_28228 0 0 1 0 2 TNRC6C chr17:76071359 5'GT 76071359 Upstream 73bp 25699 chr11 64329570 64329570 1 + G A SKCM 64329571 + 64329551 64329591 41 AACATTCGTCATCTACTGCGGCCTGCGGTTCGTGGCCGCTT AACATTCGTCATCTACTGCAGCCTGCGGTTCGTGGCCGCTT < 41bp 0.551569976965566 0.763155746915285 NA NA prediction 0.423171539899439 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329571 chr11:64329570 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28229 0 0 0 0 1 SLC22A11 chr11:64329630 5'GT 64329630 Upstream 61bp 25700 chr12 113716009 113716009 1 + C T UCEC 113716010 + 113715990 113716030 41 GTAGCCTAAAGGACTTTTACGATATCTACGAAGTTGCTGCT GTAGCCTAAAGGACTTTTATGATATCTACGAAGTTGCTGCT < 41bp 0.506715321775797 0.718300181454701 NA NA prediction 0.42316971935781 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113716010 chr12:113716009 synonymous SNV . 0 20 hm7G_associated_SNPs_28230 0 0 1 0 2 TPCN1 chr12:113715994 3'AG 113715994 Downstream 16bp 25701 chr12 113716009 113716009 1 + C T UCEC 113716010 + 113715990 113716030 41 GTAGCCTAAAGGACTTTTACGATATCTACGAAGTTGCTGCT GTAGCCTAAAGGACTTTTATGATATCTACGAAGTTGCTGCT < 41bp 0.506715321775797 0.718300181454701 NA NA prediction 0.42316971935781 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113716010 chr12:113716009 synonymous SNV . 0 20 hm7G_associated_SNPs_28230 0 0 1 0 2 TPCN1 chr12:113716042 5'GT 113716042 Upstream 34bp 25702 chr17 72342653 72342653 1 + G A rs543286637 72342654 + 72342634 72342674 41 CGCGACAGCAAGCTCACCCGGCTCCTGAAGGTACCAGCCAC CGCGACAGCAAGCTCACCCAGCTCCTGAAGGTACCAGCCAC < 41bp 0.554683869839841 0.766267402062534 NA NA prediction 0.423167064445386 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72342654 chr17:72342653 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28231 0 0 0 0 1 KIF19 chr17:72342663 5'GT 72342663 Upstream 11bp 25703 chr16 614714 614714 1 + G A rs372350826 614715 + 614695 614735 41 GATGCTGTGGCCTGAGGACGGGGATCCAGGCGGCCCTGAGA GATGCTGTGGCCTGAGGACAGGGATCCAGGCGGCCCTGAGA < 41bp 0.55511295552915 0.766695206706944 NA NA prediction 0.423164502355587 Functional Gain - PRR35 ENSG00000161992 CDS Human protein_coding chr16:614715 chr16:614714 nonsynonymous SNV 0.061 0 20 hm7G_associated_SNPs_28232 0 0 0 0 1 PRR35 chr16:614674 3'AG 614674 Downstream 41bp 25704 chr6 155571046 155571046 1 + G T UCEC 155571047 + 155571027 155571067 41 AGATGCAGAAGATCTATGAGGATTATGGGACCGTGTTTGAC AGATGCAGAAGATCTATGATGATTATGGGACCGTGTTTGAC < 41bp 0.373746952938839 0.711578044639083 NA NA prediction 0.423156089278165 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155571047 chr6:155571046 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_28233 0 0 0 0 2 TIAM2 chr6:155570985 3'AG 155570985 Downstream 62bp 25705 chr6 155571046 155571046 1 + G T UCEC 155571047 + 155571027 155571067 41 AGATGCAGAAGATCTATGAGGATTATGGGACCGTGTTTGAC AGATGCAGAAGATCTATGATGATTATGGGACCGTGTTTGAC < 41bp 0.373746952938839 0.711578044639083 NA NA prediction 0.423156089278165 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155571047 chr6:155571046 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_28233 0 0 0 0 2 TIAM2 chr6:155571103 5'GT 155571103 Upstream 58bp 25706 chr7 128802733 128802733 1 + C T LUSC 128802734 + 128802714 128802754 41 CCGCTGGGATCCTGGGCTTCGTCTTCTCAGACAAGGTAACA CCGCTGGGATCCTGGGCTTTGTCTTCTCAGACAAGGTAACA < 41bp 0.499717818092469 0.711574978364472 NA NA prediction 0.423149956728943 Functional Gain - TSPAN33 ENSG00000158457 CDS Human protein_coding chr7:128802734 chr7:128802733 synonymous SNV . 0 20 hm7G_associated_SNPs_28236 0 0 0 0 2 TSPAN33 chr7:128802674 3'AG 128802674 Downstream 60bp 25707 chr7 128802733 128802733 1 + C T LUSC 128802734 + 128802714 128802754 41 CCGCTGGGATCCTGGGCTTCGTCTTCTCAGACAAGGTAACA CCGCTGGGATCCTGGGCTTTGTCTTCTCAGACAAGGTAACA < 41bp 0.499717818092469 0.711574978364472 NA NA prediction 0.423149956728943 Functional Gain - TSPAN33 ENSG00000158457 CDS Human protein_coding chr7:128802734 chr7:128802733 synonymous SNV . 0 20 hm7G_associated_SNPs_28236 0 0 0 0 2 TSPAN33 chr7:128802748 5'GT 128802748 Upstream 16bp 25708 chr11 66323691 66323691 1 + G A LUAD 66323692 + 66323672 66323712 41 TTCTACCATGCCTTTGCCGGGGCTGAGCAGGTAAGGCGGCC TTCTACCATGCCTTTGCCGAGGCTGAGCAGGTAAGGCGGCC < 41bp 0.515243009457183 0.726817897562083 NA NA prediction 0.423149776209799 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66323692 chr11:66323691 unknown 0.999 0 20 hm7G_associated_SNPs_28237 0 0 0 0 2 ACTN3 chr11:66323616 3'AG 66323616 Downstream 76bp 25709 chr11 66323691 66323691 1 + G A LUAD 66323692 + 66323672 66323712 41 TTCTACCATGCCTTTGCCGGGGCTGAGCAGGTAAGGCGGCC TTCTACCATGCCTTTGCCGAGGCTGAGCAGGTAAGGCGGCC < 41bp 0.515243009457183 0.726817897562083 NA NA prediction 0.423149776209799 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66323692 chr11:66323691 unknown 0.999 0 20 hm7G_associated_SNPs_28237 0 0 0 0 2 ACTN3 chr11:66323701 5'GT 66323701 Upstream 11bp 25710 chr11 45947834 45947834 1 + G A SKCM 45947835 + 45947815 45947855 41 CAGCGTCTGCCTTGTGTCTGGAATGTGCAGCTGTCAGATCA CAGCGTCTGCCTTGTGTCTAGAATGTGCAGCTGTCAGATCA < 41bp 0.516784717082007 0.728358752589071 NA NA prediction 0.423148071014128 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45947835 chr11:45947834 stopgain 0.997 1 20 hm7G_associated_SNPs_28238 0 0 1 0 2 LARGE2 chr11:45947773 3'AG 45947773 Downstream 62bp 25711 chr11 45947834 45947834 1 + G A SKCM 45947835 + 45947815 45947855 41 CAGCGTCTGCCTTGTGTCTGGAATGTGCAGCTGTCAGATCA CAGCGTCTGCCTTGTGTCTAGAATGTGCAGCTGTCAGATCA < 41bp 0.516784717082007 0.728358752589071 NA NA prediction 0.423148071014128 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45947835 chr11:45947834 stopgain 0.997 1 20 hm7G_associated_SNPs_28238 0 0 1 0 2 LARGE2 chr11:45947898 5'GT 45947898 Upstream 65bp 25712 chr16 84488441 84488441 1 + G A rs184444689 84488442 + 84488422 84488462 41 AGGCTCTGCAGGAGTCAGGGGCGATCGTGGCCATGACTGGG AGGCTCTGCAGGAGTCAGGAGCGATCGTGGCCATGACTGGG < 41bp 0.494217522755493 0.71157269133218 NA NA prediction 0.423145382664359 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84488442 chr16:84488441 synonymous SNV . 0 20 hm7G_associated_SNPs_28239 0 0 0 0 1 ATP2C2 chr16:84488424 3'AG 84488424 Downstream 18bp 25713 chr1 22923842 22923842 1 + G A LUSC 22923843 + 22923823 22923863 41 TGCCTCTGCATCACCCCCCGGGAAAGCTCCCAGAGCCCCAG TGCCTCTGCATCACCCCCCAGGAAAGCTCCCAGAGCCCCAG < 41bp 0.487454889699356 0.7115718433454 NA NA prediction 0.4231436866908 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22923843 chr1:22923842 synonymous SNV . 0 20 hm7G_associated_SNPs_28240 0 0 0 0 1 EPHA8 chr1:22923805 3'AG 22923805 Downstream 38bp 25714 chr12 4705767 4705767 1 + G T LUAD 4705768 + 4705748 4705788 41 ACCTTAGGTTTCACCAGCAGGCCCTGATGGAGCTGAAGATC ACCTTAGGTTTCACCAGCATGCCCTGATGGAGCTGAAGATC < 41bp 0.692295916097229 0.903864598480127 NA NA prediction 0.423137364765796 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4705768 chr12:4705767 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_28241 0 0 0 0 1 DYRK4 chr12:4705755 3'AG 4705755 Downstream 13bp 25715 chr20 30409490 30409490 1 + G A STAD 30409491 + 30409471 30409511 41 TCAGAGAAATCCGAGGTGGGGCAGGCCCTCTGTCTCACAGC TCAGAGAAATCCGAGGTGGAGCAGGCCCTCTGTCTCACAGC < 41bp 0.53204502688335 0.743612507629072 NA NA prediction 0.423134961491443 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30409491 chr20:30409490 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_28242 0 0 0 0 1 MYLK2 chr20:30409540 5'GT 30409540 Upstream 51bp 25716 chr17 58234891 58234891 1 + G A SKCM 58234892 + 58234872 58234912 41 GGTCCGACTTGCCATATAAGGGCTCGGAGCACAGCCTCGAT GGTCCGACTTGCCATATAAAGGCTCGGAGCACAGCCTCGAT < 41bp 0.520423949018796 0.731986882027478 NA NA prediction 0.423125866017362 Functional Gain - CA4 ENSG00000167434 CDS Human protein_coding chr17:58234892 chr17:58234891 synonymous SNV . 0 20 hm7G_associated_SNPs_28244 0 0 0 0 1 CA4 chr17:58234933 5'GT 58234933 Upstream 43bp 25717 chr2 219296837 219296837 1 + C T rs35716557 219296838 + 219296818 219296858 41 TAGGCCACTTCTATGGGGGCGACTGCTACCTGCTGCTCTAC TAGGCCACTTCTATGGGGGTGACTGCTACCTGCTGCTCTAC < 41bp 0.519572312446527 0.731132485968296 NA NA prediction 0.423120347043537 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219296838 chr2:219296837 synonymous SNV . 0 20 hm7G_associated_SNPs_28246 0 0 1 0 2 VIL1 chr2:219296769 3'AG 219296769 Downstream 69bp 25718 chr2 219296837 219296837 1 + C T rs35716557 219296838 + 219296818 219296858 41 TAGGCCACTTCTATGGGGGCGACTGCTACCTGCTGCTCTAC TAGGCCACTTCTATGGGGGTGACTGCTACCTGCTGCTCTAC < 41bp 0.519572312446527 0.731132485968296 NA NA prediction 0.423120347043537 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219296838 chr2:219296837 synonymous SNV . 0 20 hm7G_associated_SNPs_28246 0 0 1 0 2 VIL1 chr2:219296906 5'GT 219296906 Upstream 70bp 25719 chr22 25282668 25282668 1 + C T COAD 25282669 + 25282649 25282689 41 TCCTGGGCCACTACCAGTTCGGGATGACGGAAACAGAAAGG TCCTGGGCCACTACCAGTTTGGGATGACGGAAACAGAAAGG < 41bp 0.509875572761312 0.721430896924437 NA NA prediction 0.42311064832625 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25282669 chr22:25282668 synonymous SNV . 0 20 hm7G_associated_SNPs_28248 0 0 0 0 1 SGSM1 chr22:25282695 5'GT 25282695 Upstream 28bp 25720 chr2 27373020 27373020 1 + G T LUSC 27373021 + 27373001 27373041 41 GTCCTGAGAATGCCGCGCGGGAGCGGAGCCGGGTCAGGACG GTCCTGAGAATGCCGCGCGTGAGCGGAGCCGGGTCAGGACG < 41bp 0.691947654204934 0.903500181253218 NA NA prediction 0.423105054096568 Functional Gain - TCF23 ENSG00000163792 CDS Human protein_coding chr2:27373021 chr2:27373020 synonymous SNV . 0 20 hm7G_associated_SNPs_28250 0 0 0 0 1 TCF23 chr2:27372991 3'AG 27372991 Downstream 30bp 25721 chr19 35786525 35786525 1 + G T ACC 35786526 + 35786506 35786546 41 TTGCCCGCAGCCTCCCGAGGGGGTCACTGGGGTGCCTGGAT TTGCCCGCAGCCTCCCGAGTGGGTCACTGGGGTGCCTGGAT < 41bp 0.36168680352906 0.71154779380048 NA NA prediction 0.423095587600959 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35786526 chr19:35786525 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_28252 0 0 0 0 1 MAG chr19:35786516 3'AG 35786516 Downstream 10bp 25722 chr7 65547884 65547884 1 + G A rs142448820 65547885 + 65547865 65547905 41 AGGAGCTCATTGGTGCAACGGCAGGGAAGCTGCACACGGGA AGGAGCTCATTGGTGCAACAGCAGGGAAGCTGCACACGGGA < 41bp 0.535741210336826 0.747288829520488 NA NA prediction 0.423095238367324 Functional Gain - ASL ENSG00000126522 CDS Human protein_coding chr7:65547885 chr7:65547884 synonymous SNV . 0 20 hm7G_associated_SNPs_28253 1 0 1 0 2 ASL chr7:65547867 3'AG 65547867 Downstream 18bp 25723 chr7 65547884 65547884 1 + G A rs142448820 65547885 + 65547865 65547905 41 AGGAGCTCATTGGTGCAACGGCAGGGAAGCTGCACACGGGA AGGAGCTCATTGGTGCAACAGCAGGGAAGCTGCACACGGGA < 41bp 0.535741210336826 0.747288829520488 NA NA prediction 0.423095238367324 Functional Gain - ASL ENSG00000126522 CDS Human protein_coding chr7:65547885 chr7:65547884 synonymous SNV . 0 20 hm7G_associated_SNPs_28253 1 0 1 0 2 ASL chr7:65547923 5'GT 65547923 Upstream 40bp 25724 chr12 7869616 7869616 1 + G T UCEC 7869617 + 7869597 7869637 41 TCTGCGTGTCTAATGGATGGGATCCTTCTGAGAATGCTAGA TCTGCGTGTCTAATGGATGTGATCCTTCTGAGAATGCTAGA < 41bp 0.662124675715542 0.873670355439188 NA NA prediction 0.423091359447291 Functional Gain - DPPA3 ENSG00000187569 CDS Human protein_coding chr12:7869617 chr12:7869616 nonsynonymous SNV 0.022 3 20 hm7G_associated_SNPs_28254 0 0 0 0 1 DPPA3 chr12:7869563 3'AG 7869563 Downstream 54bp 25725 chr11 73073727 73073727 1 + G A UCEC 73073728 + 73073708 73073748 41 AGTCTTCGCCCAGCCCCTCGGGGACGCTGCAGAGCCAGGCC AGTCTTCGCCCAGCCCCTCAGGGACGCTGCAGAGCCAGGCC < 41bp 0.525038311499017 0.736583950699141 NA NA prediction 0.423091278400246 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73073728 chr11:73073727 synonymous SNV . 0 20 hm7G_associated_SNPs_28255 0 0 0 0 1 ARHGEF17 chr11:73073779 5'GT 73073779 Upstream 53bp 25726 chr14 94394620 94394620 1 + G A SKCM 94394621 + 94394601 94394641 41 ATGGAAAGCCTCGTGCAGTGGCCCCCTGGTGATGGCATCCG ATGGAAAGCCTCGTGCAGTAGCCCCCTGGTGATGGCATCCG < 41bp 0.555429271085139 0.76697488610425 NA NA prediction 0.423091230038224 Functional Gain - FAM181A ENSG00000140067 CDS Human protein_coding chr14:94394621 chr14:94394620 nonsynonymous SNV 0.856 0 20 hm7G_associated_SNPs_28256 0 0 0 0 1 FAM181A chr14:94394545 3'AG 94394545 Downstream 76bp 25727 chr14 105958010 105958010 1 + G T rs587675709 105958011 + 105957991 105958031 41 GCTCTCGCCACTCCCTGCGGGCAACGCCTTGGCATCGCTCG GCTCTCGCCACTCCCTGCGTGCAACGCCTTGGCATCGCTCG < 41bp 0.363325362820747 0.711545277271063 NA NA prediction 0.423090554542125 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958011 chr14:105958010 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28257 0 0 1 0 2 C14orf80 chr14:105957959 3'AG 105957959 Downstream 52bp 25728 chr14 105958010 105958010 1 + G T rs587675709 105958011 + 105957991 105958031 41 GCTCTCGCCACTCCCTGCGGGCAACGCCTTGGCATCGCTCG GCTCTCGCCACTCCCTGCGTGCAACGCCTTGGCATCGCTCG < 41bp 0.363325362820747 0.711545277271063 NA NA prediction 0.423090554542125 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105958011 chr14:105958010 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28257 0 0 1 0 2 C14orf80 chr14:105958037 5'GT 105958037 Upstream 28bp 25729 chr12 52306960 52306960 1 + C T COAD 52306961 + 52306941 52306981 41 TTGCAAGGGGCCTACCTGCCGGGGGGCCTGGTGCACAGTAG TTGCAAGGGGCCTACCTGCTGGGGGGCCTGGTGCACAGTAG < 41bp 0.516614717754075 0.728159976667365 NA NA prediction 0.42309051782658 Functional Gain - ACVRL1 ENSG00000139567 CDS Human protein_coding chr12:52306961 chr12:52306960 nonsynonymous SNV 0.580 1 20 hm7G_associated_SNPs_28258 0 0 0 0 1 ACVRL1 chr12:52306883 3'AG 52306883 Downstream 78bp 25730 chr6 109220943 109220943 1 + C T UCEC 109220944 + 109220924 109220964 41 ACGCAGAAATAGAAGTAGACGAAGTCTTTTGGAATACAAGG ACGCAGAAATAGAAGTAGATGAAGTCTTTTGGAATACAAGG < 41bp 0.506178551016164 0.717707777471809 NA NA prediction 0.42305845291129 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109220944 chr6:109220943 synonymous SNV . 0 20 hm7G_associated_SNPs_28261 0 0 0 0 1 ARMC2 chr6:109220897 3'AG 109220897 Downstream 47bp 25731 chr16 30486636 30486636 1 + G A LUAD 30486637 + 30486617 30486657 41 TTCTCACCAGGGTCATCGTGGGAGCTCCAGGGGAGGGGAAC TTCTCACCAGGGTCATCGTAGGAGCTCCAGGGGAGGGGAAC < 41bp 0.534421517891824 0.745948795290807 NA NA prediction 0.423054554797966 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30486637 chr16:30486636 synonymous SNV . 0 20 hm7G_associated_SNPs_28262 0 0 0 0 1 ITGAL chr16:30486721 5'GT 30486721 Upstream 86bp 25732 chr6 155116233 155116233 1 + C T COAD 155116234 + 155116214 155116254 41 ACAAATACAGATACACTTGCGGCTGTAGCTCAGATCTTGCA ACAAATACAGATACACTTGTGGCTGTAGCTCAGATCTTGCA < 41bp 0.525345228962301 0.73687089975983 NA NA prediction 0.423051341595058 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155116234 chr6:155116233 nonsynonymous SNV 0.909 0 20 hm7G_associated_SNPs_28263 0 0 1 0 2 SCAF8 chr6:155116143 3'AG 155116143 Downstream 91bp 25733 chr6 155116233 155116233 1 + C T COAD 155116234 + 155116214 155116254 41 ACAAATACAGATACACTTGCGGCTGTAGCTCAGATCTTGCA ACAAATACAGATACACTTGTGGCTGTAGCTCAGATCTTGCA < 41bp 0.525345228962301 0.73687089975983 NA NA prediction 0.423051341595058 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155116234 chr6:155116233 nonsynonymous SNV 0.909 0 20 hm7G_associated_SNPs_28263 0 0 1 0 2 SCAF8 chr6:155116273 5'GT 155116273 Upstream 41bp 25734 chr3 44816777 44816777 1 + C T STAD 44816778 + 44816758 44816798 41 TGCCATCAAAGTTTTTGTGCGAATTCGTCCTCCTGCAGAAA TGCCATCAAAGTTTTTGTGTGAATTCGTCCTCCTGCAGAAA < 41bp 0.500447499909307 0.711962399205678 NA NA prediction 0.423029798592741 Functional Gain - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44816778 chr3:44816777 stopgain 0.998 1 20 hm7G_associated_SNPs_28270 0 0 1 0 1 KIF15 chr3:44816746 3'AG 44816746 Downstream 32bp 25735 chr19 42841097 42841097 1 + G T BRCA 42841098 + 42841078 42841118 41 TTCTGGGCAATTACATGGTGGTCTATGGTGAGGAGGCTCCC TTCTGGGCAATTACATGGTTGTCTATGGTGAGGAGGCTCCC < 41bp 0.379280309465999 0.711512184828018 NA NA prediction 0.423024369656037 Functional Gain - MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42841098 chr19:42841097 synonymous SNV . 0 20 hm7G_associated_SNPs_28271 0 0 1 0 1 MEGF8 chr19:42841104 5'GT 42841104 Upstream 8bp 25736 chr16 30998292 30998292 1 + G A UCEC 30998293 + 30998273 30998313 41 GGCTCTTCCGGGCCATCCCGGCCTCTGTGGAGCATGGCCGG GGCTCTTCCGGGCCATCCCAGCCTCTGTGGAGCATGGCCGG < 41bp 0.560699150660443 0.772209513994554 NA NA prediction 0.423020726668221 Functional Gain - HSD3B7 ENSG00000099377 CDS Human protein_coding chr16:30998293 chr16:30998292 synonymous SNV . 0 20 hm7G_associated_SNPs_28272 0 0 1 0 1 HSD3B7 chr16:30998323 5'GT 30998323 Upstream 32bp 25737 chr3 179479000 179479000 1 + C T COAD 179479001 + 179478981 179479021 41 TCACTGGAAATATGGGCGCCGAGGTGGCCTTCAACTGGATC TCACTGGAAATATGGGCGCTGAGGTGGCCTTCAACTGGATC < 41bp 0.49762613933346 0.711507976826007 NA NA prediction 0.423015953652013 Functional Gain - USP13 ENSG00000058056 CDS Human protein_coding chr3:179479001 chr3:179479000 synonymous SNV . 0 20 hm7G_associated_SNPs_28273 0 0 1 0 1 USP13 chr3:179479043 5'GT 179479043 Upstream 44bp 25738 chr10 82269147 82269147 1 + C T KICH 82269148 + 82269128 82269168 41 CTGGGTGAGGGACCGGTTCCGGGAGTTCTTCGAGAGCAACA CTGGGTGAGGGACCGGTTCTGGGAGTTCTTCGAGAGCAACA < 41bp 0.532040914224252 0.743543056461075 NA NA prediction 0.423004284473646 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82269148 chr10:82269147 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_28275 0 0 1 0 2 TSPAN14 chr10:82269057 3'AG 82269057 Downstream 91bp 25739 chr10 82269147 82269147 1 + C T KICH 82269148 + 82269128 82269168 41 CTGGGTGAGGGACCGGTTCCGGGAGTTCTTCGAGAGCAACA CTGGGTGAGGGACCGGTTCTGGGAGTTCTTCGAGAGCAACA < 41bp 0.532040914224252 0.743543056461075 NA NA prediction 0.423004284473646 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82269148 chr10:82269147 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_28275 0 0 1 0 2 TSPAN14 chr10:82269227 5'GT 82269227 Upstream 81bp 25740 chr3 184104641 184104641 1 + G A HNSC 184104642 + 184104622 184104662 41 CCTCTCTGCAGAGACGAACGGTGATCTGTGACCCGGTGGTG CCTCTCTGCAGAGACGAACAGTGATCTGTGACCCGGTGGTG < 41bp 0.508952010962187 0.720449106035653 NA NA prediction 0.422994190146933 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184104642 chr3:184104641 synonymous SNV . 0 20 hm7G_associated_SNPs_28278 0 0 1 0 2 CHRD chr3:184104633 3'AG 184104633 Downstream 9bp 25741 chr3 184104641 184104641 1 + G A HNSC 184104642 + 184104622 184104662 41 CCTCTCTGCAGAGACGAACGGTGATCTGTGACCCGGTGGTG CCTCTCTGCAGAGACGAACAGTGATCTGTGACCCGGTGGTG < 41bp 0.508952010962187 0.720449106035653 NA NA prediction 0.422994190146933 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184104642 chr3:184104641 synonymous SNV . 0 20 hm7G_associated_SNPs_28278 0 0 1 0 2 CHRD chr3:184104726 5'GT 184104726 Upstream 86bp 25742 chr7 73768238 73768238 1 + G A LUAD 73768239 + 73768219 73768259 41 ACGAAGACTGGCGTGGTGCGGTACGTGGGGGAGACAGACTT ACGAAGACTGGCGTGGTGCAGTACGTGGGGGAGACAGACTT < 41bp 0.506660974317177 0.718158040019512 NA NA prediction 0.42299413140467 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73768239 chr7:73768238 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_28279 0 0 1 0 2 CLIP2 chr7:73768210 3'AG 73768210 Downstream 29bp 25743 chr7 73768238 73768238 1 + G A LUAD 73768239 + 73768219 73768259 41 ACGAAGACTGGCGTGGTGCGGTACGTGGGGGAGACAGACTT ACGAAGACTGGCGTGGTGCAGTACGTGGGGGAGACAGACTT < 41bp 0.506660974317177 0.718158040019512 NA NA prediction 0.42299413140467 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73768239 chr7:73768238 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_28279 0 0 1 0 2 CLIP2 chr7:73768334 5'GT 73768334 Upstream 97bp 25744 chr1 12071637 12071637 1 + G A rs141339523 12071638 + 12071618 12071658 41 GATAGTGGGCACCTGAGGCGGAGTCTGCGTGGAGAGGGGCG GATAGTGGGCACCTGAGGCAGAGTCTGCGTGGAGAGGGGCG < 41bp 0.501666676255068 0.713159175423284 NA NA prediction 0.422984998336431 Functional Gain - MFN2 ENSG00000116688 UTR3 Human protein_coding chr1:12071638 chr1:12071637 . . 0 20 hm7G_associated_SNPs_28280 1 0 1 0 1 MFN2 chr1:12071553 3'AG 12071553 Downstream 85bp 25745 chr2 95944749 95944749 1 + G A BRCA 95944750 + 95944730 95944770 41 CAGAGCTGAAGAAGGCAGTGGCCCAGCAGCCGGAAGGGGTG CAGAGCTGAAGAAGGCAGTAGCCCAGCAGCCGGAAGGGGTG < 41bp 0.558529635947776 0.770019296382895 NA NA prediction 0.422979320870238 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95944750 chr2:95944749 synonymous SNV . 0 20 hm7G_associated_SNPs_28281 0 0 0 0 1 PROM2 chr2:95944733 3'AG 95944733 Downstream 17bp 25746 chr4 184618969 184618969 1 + C T SKCM 184618970 + 184618950 184618990 41 TGACCACAGTGGACCAGCTCGAGTCTCAAGTGGACAATGGT TGACCACAGTGGACCAGCTTGAGTCTCAAGTGGACAATGGT < 41bp 0.502750780193475 0.714240391937277 NA NA prediction 0.422979223487603 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184618970 chr4:184618969 synonymous SNV . 0 20 hm7G_associated_SNPs_28282 0 0 1 0 1 TRAPPC11 chr4:184618988 5'GT 184618988 Upstream 20bp 25747 chr10 134912169 134912169 1 + C T ESCA 134912170 + 134912150 134912190 41 CCGCATCAGCCGCAAGGGCCGGCACACGCTCCTGAATTTCT CCGCATCAGCCGCAAGGGCTGGCACACGCTCCTGAATTTCT < 41bp 0.510718467445998 0.722206633439204 NA NA prediction 0.422976331986411 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134912170 chr10:134912169 nonsynonymous SNV 0.906 0 20 hm7G_associated_SNPs_28283 0 0 0 0 2 ADGRA1 chr10:134912144 3'AG 134912144 Downstream 26bp 25748 chr10 134912169 134912169 1 + C T ESCA 134912170 + 134912150 134912190 41 CCGCATCAGCCGCAAGGGCCGGCACACGCTCCTGAATTTCT CCGCATCAGCCGCAAGGGCTGGCACACGCTCCTGAATTTCT < 41bp 0.510718467445998 0.722206633439204 NA NA prediction 0.422976331986411 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134912170 chr10:134912169 nonsynonymous SNV 0.906 0 20 hm7G_associated_SNPs_28283 0 0 0 0 2 ADGRA1 chr10:134912267 5'GT 134912267 Upstream 99bp 25749 chr12 12514215 12514215 1 + G A OV 12514216 + 12514196 12514236 41 CAGGGCTCCCAGGCCTCACGGAACGTCAGCAACGATCCCGA CAGGGCTCCCAGGCCTCACAGAACGTCAGCAACGATCCCGA < 41bp 0.504901664711038 0.716388297424195 NA NA prediction 0.422973265426314 Functional Gain - BORCS5 ENSG00000165714 CDS Human protein_coding chr12:12514216 chr12:12514215 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_28284 0 0 0 0 2 BORCS5 chr12:12514140 3'AG 12514140 Downstream 76bp 25750 chr12 12514215 12514215 1 + G A OV 12514216 + 12514196 12514236 41 CAGGGCTCCCAGGCCTCACGGAACGTCAGCAACGATCCCGA CAGGGCTCCCAGGCCTCACAGAACGTCAGCAACGATCCCGA < 41bp 0.504901664711038 0.716388297424195 NA NA prediction 0.422973265426314 Functional Gain - BORCS5 ENSG00000165714 CDS Human protein_coding chr12:12514216 chr12:12514215 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_28284 0 0 0 0 2 BORCS5 chr12:12514283 5'GT 12514283 Upstream 69bp 25751 chr8 2054057 2054057 1 + C T UCEC 2054058 + 2054038 2054078 41 AGGAAATCAGTGCTGGTGTCGATGAACAAGGCAACATCTAT AGGAAATCAGTGCTGGTGTTGATGAACAAGGCAACATCTAT < 41bp 0.509227028202111 0.72071015721482 NA NA prediction 0.422966258025417 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2054058 chr8:2054057 synonymous SNV . 0 20 hm7G_associated_SNPs_28286 0 0 0 0 1 MYOM2 chr8:2054032 3'AG 2054032 Downstream 26bp 25752 chr3 195456564 195456564 1 + C T rs115826755 195456565 + 195456545 195456585 41 CGGCTGAGTGTGGCTTCCCCGGAAGACCTCACTGACCCCAG CGGCTGAGTGTGGCTTCCCTGGAAGACCTCACTGACCCCAG < 41bp 0.514539390004284 0.726013820976844 NA NA prediction 0.42294886194512 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195456565 chr3:195456564 nonsynonymous SNV 0.448 0 20 hm7G_associated_SNPs_28288 0 0 0 0 2 MUC20 chr3:195456519 3'AG 195456519 Downstream 46bp 25753 chr3 195456564 195456564 1 + C T rs115826755 195456565 + 195456545 195456585 41 CGGCTGAGTGTGGCTTCCCCGGAAGACCTCACTGACCCCAG CGGCTGAGTGTGGCTTCCCTGGAAGACCTCACTGACCCCAG < 41bp 0.514539390004284 0.726013820976844 NA NA prediction 0.42294886194512 Functional Gain - MUC20 ENSG00000176945 CDS Human protein_coding chr3:195456565 chr3:195456564 nonsynonymous SNV 0.448 0 20 hm7G_associated_SNPs_28288 0 0 0 0 2 MUC20 chr3:195456610 5'GT 195456610 Upstream 47bp 25754 chr12 68043620 68043620 1 + G T LUAD 68043621 + 68043601 68043641 41 GTCAGCTTCAGGCTTCCCCGGGGCTCGGTGCAGGGGCCACC GTCAGCTTCAGGCTTCCCCTGGGCTCGGTGCAGGGGCCACC < 41bp 0.6983190875158 0.909787716529179 NA NA prediction 0.422937258026758 Functional Gain - DYRK2 ENSG00000127334 CDS Human protein_coding chr12:68043621 chr12:68043620 synonymous SNV . 0 20 hm7G_associated_SNPs_28290 0 0 1 0 1 DYRK2 chr12:68043577 3'AG 68043577 Downstream 44bp 25755 chr15 89734320 89734320 1 + C T rs111401789 89734321 + 89734301 89734341 41 TGTGTTGCAGGAAGTTTCACGGCTATAACTCCCTGAAGGAA TGTGTTGCAGGAAGTTTCATGGCTATAACTCCCTGAAGGAA < 41bp 0.499723184532333 0.711457913052578 NA NA prediction 0.422915826105155 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89734321 chr15:89734320 synonymous SNV . 0 20 hm7G_associated_SNPs_28292 0 0 1 0 1 ABHD2 chr15:89734311 3'AG 89734311 Downstream 10bp 25756 chrX 2773149 2773149 1 + C T HNSC 2773150 + 2773130 2773170 41 TTCCAGCCTTCTCTCCACACGCATAAACTCCTGCTACAGCA TTCCAGCCTTCTCTCCACATGCATAAACTCCTGCTACAGCA < 41bp 0.520180627287264 0.731634951968691 NA NA prediction 0.422908649362853 Functional Gain - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2773150 chrX:2773149 nonsynonymous SNV 0.004 4 20 hm7G_associated_SNPs_28294 0 0 0 0 1 GYG2 chrX:2773196 5'GT 2773196 Upstream 48bp 25757 chr9 140674100 140674100 1 + C T LUAD 140674101 + 140674081 140674121 41 CCACAGACCCAAGAAGCTTCGCTTCCACCCAAAGCAGCTGT CCACAGACCCAAGAAGCTTTGCTTCCACCCAAAGCAGCTGT < 41bp 0.501939953572363 0.713393020990575 NA NA prediction 0.422906134836424 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140674101 chr9:140674100 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_28295 0 0 1 0 2 EHMT1 chr9:140674087 3'AG 140674087 Downstream 14bp 25758 chr9 140674100 140674100 1 + C T LUAD 140674101 + 140674081 140674121 41 CCACAGACCCAAGAAGCTTCGCTTCCACCCAAAGCAGCTGT CCACAGACCCAAGAAGCTTTGCTTCCACCCAAAGCAGCTGT < 41bp 0.501939953572363 0.713393020990575 NA NA prediction 0.422906134836424 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140674101 chr9:140674100 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_28295 0 0 1 0 2 EHMT1 chr9:140674169 5'GT 140674169 Upstream 70bp 25759 chr3 42166928 42166928 1 + C T BLCA 42166929 + 42166909 42166949 41 TAGATGTGTGCAACAGCACCGATCTTCCGGAAGTCGAGATC TAGATGTGTGCAACAGCACTGATCTTCCGGAAGTCGAGATC < 41bp 0.507841134054136 0.719290043220566 NA NA prediction 0.422897818332861 Functional Gain - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42166929 chr3:42166928 synonymous SNV . 0 20 hm7G_associated_SNPs_28297 0 0 1 0 1 TRAK1 chr3:42166912 3'AG 42166912 Downstream 17bp 25760 chr2 160569041 160569041 1 + G T rs556693167 160569042 + 160569022 160569062 41 TGCGCCGGATCCGGGAGAGGGGCGGGCGCCATTGTGCTTCG TGCGCCGGATCCGGGAGAGTGGCGGGCGCCATTGTGCTTCG < 41bp 0.423448747446379 0.711439974472836 NA NA prediction 0.422879948945672 Functional Gain - MARCH7 ENSG00000136536 UTR5 Human protein_coding chr2:160569042 chr2:160569041 . . 0 20 hm7G_associated_SNPs_28299 0 0 1 0 1 MARCH7 chr2:160569117 5'GT 160569117 Upstream 77bp 25761 chr11 64118705 64118705 1 + G A COAD 64118706 + 64118686 64118726 41 GTGGAGACCCAGAATGTGCGGCTTATTGAGGTGGAGCGCAG GTGGAGACCCAGAATGTGCAGCTTATTGAGGTGGAGCGCAG < 41bp 0.532486455121372 0.743924080776273 NA NA prediction 0.422875251309802 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64118706 chr11:64118705 nonsynonymous SNV 0.396 3 20 hm7G_associated_SNPs_28301 0 0 1 0 1 CCDC88B chr11:64118632 3'AG 64118632 Downstream 74bp 25762 chr2 32865348 32865348 1 + G T LUSC 32865349 + 32865329 32865369 41 TTTTTCAGGTTAAAGGACTGGATGCATTTGTTCTGAGCCTG TTTTTCAGGTTAAAGGACTTGATGCATTTGTTCTGAGCCTG < 41bp 0.380545860535436 0.711436181025609 NA NA prediction 0.422872362051219 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32865349 chr2:32865348 synonymous SNV . 0 20 hm7G_associated_SNPs_28302 0 0 1 0 1 TTC27 chr2:32865337 3'AG 32865337 Downstream 12bp 25763 chr19 54656196 54656196 1 + G A STAD 54656197 + 54656177 54656217 41 GCAGTACATCAGCACCTCCGGCCTCAGCCCAGCCGCCCCTG GCAGTACATCAGCACCTCCAGCCTCAGCCCAGCCGCCCCTG < 41bp 0.563754480736418 0.775190493206783 NA NA prediction 0.422872024940729 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54656197 chr19:54656196 synonymous SNV . 0 20 hm7G_associated_SNPs_28303 0 0 1 0 1 CNOT3 chr19:54656165 3'AG 54656165 Downstream 32bp 25764 chr19 19168264 19168264 1 + G A OV 19168265 + 19168245 19168285 41 CCGAAACCTGGTGGCCCACGGCCAGGCCTTCTCGAAGCCCA CCGAAACCTGGTGGCCCACAGCCAGGCCTTCTCGAAGCCCA < 41bp 0.492734304730731 0.71143480447764 NA NA prediction 0.42286960895528 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19168265 chr19:19168264 nonsynonymous SNV 0.742 0 20 hm7G_associated_SNPs_28304 0 0 1 0 1 ARMC6 chr19:19168225 3'AG 19168225 Downstream 40bp 25765 chr16 81969895 81969895 1 + G T UCEC 81969896 + 81969876 81969916 41 TGACCCGCGTCTACCCAAAGGGACAAAGAGTTGACTCTTCA TGACCCGCGTCTACCCAAATGGACAAAGAGTTGACTCTTCA < 41bp 0.364644759573154 0.711429413584735 NA NA prediction 0.422858827169471 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81969896 chr16:81969895 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_28308 0 0 0 0 1 PLCG2 chr16:81969983 5'GT 81969983 Upstream 89bp 25766 chr3 128973556 128973556 1 + G A CESC 128973557 + 128973537 128973577 41 AAGACAACTACCGGGGCCCGGCCGTGCGAGCCCTCTGCCAG AAGACAACTACCGGGGCCCAGCCGTGCGAGCCCTCTGCCAG < 41bp 0.529115160373194 0.740541300356075 NA NA prediction 0.422852279965761 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973557 chr3:128973556 synonymous SNV . 0 20 hm7G_associated_SNPs_28310 0 0 1 0 2 COPG1 chr3:128973511 3'AG 128973511 Downstream 46bp 25767 chr3 128973556 128973556 1 + G A CESC 128973557 + 128973537 128973577 41 AAGACAACTACCGGGGCCCGGCCGTGCGAGCCCTCTGCCAG AAGACAACTACCGGGGCCCAGCCGTGCGAGCCCTCTGCCAG < 41bp 0.529115160373194 0.740541300356075 NA NA prediction 0.422852279965761 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128973557 chr3:128973556 synonymous SNV . 0 20 hm7G_associated_SNPs_28310 0 0 1 0 2 COPG1 chr3:128973586 5'GT 128973586 Upstream 31bp 25768 chr16 335185 335185 1 + G A rs45503892 335186 + 335166 335206 41 ACAGCATGCGCCTGGTCACGGAGTTCAACAGCCAGGTGCGT ACAGCATGCGCCTGGTCACAGAGTTCAACAGCCAGGTGCGT < 41bp 0.511874277237511 0.723299333293698 NA NA prediction 0.422850112112374 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:335186 chr16:335185 synonymous SNV . 0 20 hm7G_associated_SNPs_28312 0 0 0 0 1 PDIA2 chr16:335200 5'GT 335200 Upstream 16bp 25769 chr16 28880341 28880341 1 + C T SKCM 28880342 + 28880322 28880362 41 TGTAGGTGGAAGGTCCATCCGAGTATATCATGGAGACAGTG TGTAGGTGGAAGGTCCATCTGAGTATATCATGGAGACAGTG < 41bp 0.51007652618224 0.721501509530895 NA NA prediction 0.42284996669731 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28880342 chr16:28880341 synonymous SNV . 0 20 hm7G_associated_SNPs_28313 0 0 1 0 1 SH2B1 chr16:28880327 3'AG 28880327 Downstream 15bp 25770 chr22 39817901 39817901 1 + G T UCEC 39817902 + 39817882 39817922 41 AGCCGCTGGATGGGGTGACGGGCTTCTTGGTGCTGATGTCG AGCCGCTGGATGGGGTGACTGGCTTCTTGGTGCTGATGTCG < 41bp 0.351473477211678 0.711417676406202 NA NA prediction 0.422835352812404 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39817902 chr22:39817901 synonymous SNV . 0 20 hm7G_associated_SNPs_28315 0 0 1 0 2 TAB1 chr22:39817832 3'AG 39817832 Downstream 70bp 25771 chr22 39817901 39817901 1 + G T UCEC 39817902 + 39817882 39817922 41 AGCCGCTGGATGGGGTGACGGGCTTCTTGGTGCTGATGTCG AGCCGCTGGATGGGGTGACTGGCTTCTTGGTGCTGATGTCG < 41bp 0.351473477211678 0.711417676406202 NA NA prediction 0.422835352812404 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39817902 chr22:39817901 synonymous SNV . 0 20 hm7G_associated_SNPs_28315 0 0 1 0 2 TAB1 chr22:39817976 5'GT 39817976 Upstream 76bp 25772 chr17 29261309 29261309 1 + G T UCEC 29261310 + 29261290 29261330 41 TCCTGAAGTACTTCACAAAGGAACAGGTAAGATGCCAGACC TCCTGAAGTACTTCACAAATGAACAGGTAAGATGCCAGACC < 41bp 0.695413425561975 0.906829564703187 NA NA prediction 0.422832278282425 Functional Gain - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29261310 chr17:29261309 nonsynonymous SNV 0.960 2 20 hm7G_associated_SNPs_28316 0 0 0 2 1 ADAP2 chr17:29261315 5'GT 29261315 Upstream 7bp 25773 chr14 74726405 74726405 1 + G A HNSC 74726406 + 74726386 74726426 41 CTCTACGGGGCCATGGTGCGGCACTCCATCCCCCTGCCCGA CTCTACGGGGCCATGGTGCAGCACTCCATCCCCCTGCCCGA < 41bp 0.550538040216094 0.761952575325748 NA NA prediction 0.422829070219309 Functional Gain - VSX2 ENSG00000119614 CDS Human protein_coding chr14:74726406 chr14:74726405 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_28319 0 0 0 0 1 VSX2 chr14:74726485 5'GT 74726485 Upstream 81bp 25774 chr17 40665967 40665967 1 + G A UCEC 40665968 + 40665948 40665988 41 AACACTGCCTCCTACTTGCGGCTCTGGGCCCTCAGCCTCGC AACACTGCCTCCTACTTGCAGCTCTGGGCCCTCAGCCTCGC < 41bp 0.515492055877972 0.726905848229395 NA NA prediction 0.422827584702846 Functional Gain - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40665968 chr17:40665967 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_28320 0 0 1 0 2 ATP6V0A1 chr17:40665879 3'AG 40665879 Downstream 89bp 25775 chr17 40665967 40665967 1 + G A UCEC 40665968 + 40665948 40665988 41 AACACTGCCTCCTACTTGCGGCTCTGGGCCCTCAGCCTCGC AACACTGCCTCCTACTTGCAGCTCTGGGCCCTCAGCCTCGC < 41bp 0.515492055877972 0.726905848229395 NA NA prediction 0.422827584702846 Functional Gain - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40665968 chr17:40665967 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_28320 0 0 1 0 2 ATP6V0A1 chr17:40665996 5'GT 40665996 Upstream 30bp 25776 chr13 111289536 111289536 1 + C T STAD 111289537 + 111289517 111289557 41 GGGCAAGGGGACCTCCTGTCGGGCTCCCTGGGCGTCCTGGT GGGCAAGGGGACCTCCTGTTGGGCTCCCTGGGCGTCCTGGT < 41bp 0.506001328980097 0.717409303847253 NA NA prediction 0.422815949734312 Functional Gain - NAXD ENSG00000213995 CDS Human protein_coding chr13:111289537 chr13:111289536 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_28321 0 0 1 0 2 NAXD chr13:111289476 3'AG 111289476 Downstream 61bp 25777 chr13 111289536 111289536 1 + C T STAD 111289537 + 111289517 111289557 41 GGGCAAGGGGACCTCCTGTCGGGCTCCCTGGGCGTCCTGGT GGGCAAGGGGACCTCCTGTTGGGCTCCCTGGGCGTCCTGGT < 41bp 0.506001328980097 0.717409303847253 NA NA prediction 0.422815949734312 Functional Gain - NAXD ENSG00000213995 CDS Human protein_coding chr13:111289537 chr13:111289536 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_28321 0 0 1 0 2 NAXD chr13:111289596 5'GT 111289596 Upstream 61bp 25778 chr4 123868400 123868400 1 + G T KIRC 123868401 + 123868381 123868421 41 TTGTTAGGAAGTAAGTGAAGGACAAGTGTTGGTTCTTGGGG TTGTTAGGAAGTAAGTGAATGACAAGTGTTGGTTCTTGGGG < 41bp 0.391744845666444 0.71140735916162 NA NA prediction 0.42281471832324 Functional Gain - SPATA5 ENSG00000145375 CDS Human protein_coding chr4:123868401 chr4:123868400 stopgain 0.858 1 20 hm7G_associated_SNPs_28322 0 0 1 0 1 SPATA5 chr4:123868388 3'AG 123868388 Downstream 13bp 25779 chr15 90144735 90144735 1 + C T COAD 90144736 + 90144716 90144756 41 TCAGGTGACAGATTTGCTGCGCATGGTGTGTTTAACTGAGG TCAGGTGACAGATTTGCTGTGCATGGTGTGTTTAACTGAGG < 41bp 0.509223611430395 0.720629402512845 NA NA prediction 0.4228115821649 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90144736 chr15:90144735 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_28323 0 0 1 0 2 TICRR chr15:90144720 3'AG 90144720 Downstream 16bp 25780 chr15 90144735 90144735 1 + C T COAD 90144736 + 90144716 90144756 41 TCAGGTGACAGATTTGCTGCGCATGGTGTGTTTAACTGAGG TCAGGTGACAGATTTGCTGTGCATGGTGTGTTTAACTGAGG < 41bp 0.509223611430395 0.720629402512845 NA NA prediction 0.4228115821649 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90144736 chr15:90144735 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_28323 0 0 1 0 2 TICRR chr15:90144799 5'GT 90144799 Upstream 65bp 25781 chr19 5641861 5641861 1 + C T CESC 5641862 + 5641842 5641882 41 TTGCAGATTGTGTCGAAGACGATGATGCTGATAACCTCCAG TTGCAGATTGTGTCGAAGATGATGATGCTGATAACCTCCAG < 41bp 0.528852926018349 0.740248897686365 NA NA prediction 0.422791943336031 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5641862 chr19:5641861 synonymous SNV . 0 20 hm7G_associated_SNPs_28324 0 0 1 0 1 SAFB chr19:5641957 5'GT 5641957 Upstream 97bp 25782 chr1 154516937 154516937 1 + C T COAD 154516938 + 154516918 154516958 41 AGGGCTCCACCGTTATGCGCGGGACTCGCTGTCTGGCAGAG AGGGCTCCACCGTTATGCGTGGGACTCGCTGTCTGGCAGAG < 41bp 0.499080889746129 0.711392837290157 NA NA prediction 0.422785674580314 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516938 chr1:154516937 synonymous SNV . 0 20 hm7G_associated_SNPs_28326 0 0 0 0 2 TDRD10 chr1:154516848 3'AG 154516848 Downstream 90bp 25783 chr1 154516937 154516937 1 + C T COAD 154516938 + 154516918 154516958 41 AGGGCTCCACCGTTATGCGCGGGACTCGCTGTCTGGCAGAG AGGGCTCCACCGTTATGCGTGGGACTCGCTGTCTGGCAGAG < 41bp 0.499080889746129 0.711392837290157 NA NA prediction 0.422785674580314 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516938 chr1:154516937 synonymous SNV . 0 20 hm7G_associated_SNPs_28326 0 0 0 0 2 TDRD10 chr1:154516993 5'GT 154516993 Upstream 57bp 25784 chr10 8100268 8100268 1 + G A SKCM 8100269 + 8100249 8100289 41 TTTCCCCGTTGCCCCACAGGGAGCCAGGTGTGCCGCCCGCC TTTCCCCGTTGCCCCACAGAGAGCCAGGTGTGCCGCCCGCC < 41bp 0.523522065069754 0.734914459329371 NA NA prediction 0.422784788519234 Functional Gain - GATA3 ENSG00000107485 CDS Human protein_coding chr10:8100269 chr10:8100268 nonsynonymous SNV 0.952 3 20 hm7G_associated_SNPs_28327 0 0 0 0 1 GATA3 chr10:8100268 3'AG 8100268 Downstream 1bp 25785 chr2 182360534 182360534 1 + C T PAAD 182360535 + 182360515 182360555 41 GACCTGTAGTAATTGTTGACGCTTCTTTAAGCCACCCTGAG GACCTGTAGTAATTGTTGATGCTTCTTTAAGCCACCCTGAG < 41bp 0.502888332027445 0.714277629094072 NA NA prediction 0.422778594133253 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182360535 chr2:182360534 synonymous SNV . 0 20 hm7G_associated_SNPs_28329 0 0 0 0 1 ITGA4 chr2:182360510 3'AG 182360510 Downstream 25bp 25786 chr5 5191843 5191843 1 + C T UCEC 5191844 + 5191824 5191864 41 AGTAAATATCGCAGCTGCACGATTAATGAAGATACAGGTCT AGTAAATATCGCAGCTGCATGATTAATGAAGATACAGGTCT < 41bp 0.506868846957352 0.718257766332589 NA NA prediction 0.422777838750474 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5191844 chr5:5191843 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_28330 0 0 0 0 2 ADAMTS16 chr5:5191798 3'AG 5191798 Downstream 46bp 25787 chr5 5191843 5191843 1 + C T UCEC 5191844 + 5191824 5191864 41 AGTAAATATCGCAGCTGCACGATTAATGAAGATACAGGTCT AGTAAATATCGCAGCTGCATGATTAATGAAGATACAGGTCT < 41bp 0.506868846957352 0.718257766332589 NA NA prediction 0.422777838750474 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5191844 chr5:5191843 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_28330 0 0 0 0 2 ADAMTS16 chr5:5191903 5'GT 5191903 Upstream 61bp 25788 chr9 131744902 131744902 1 + C T LGG 131744903 + 131744883 131744923 41 TGATAGGGCATACCTGGTACGCTGGGAATACTCCTATAGCA TGATAGGGCATACCTGGTATGCTGGGAATACTCCTATAGCA < 41bp 0.513209627233242 0.724598407126557 NA NA prediction 0.422777559786631 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131744903 chr9:131744902 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_28331 0 0 1 0 2 NUP188 chr9:131744828 3'AG 131744828 Downstream 75bp 25789 chr9 131744902 131744902 1 + C T LGG 131744903 + 131744883 131744923 41 TGATAGGGCATACCTGGTACGCTGGGAATACTCCTATAGCA TGATAGGGCATACCTGGTATGCTGGGAATACTCCTATAGCA < 41bp 0.513209627233242 0.724598407126557 NA NA prediction 0.422777559786631 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131744903 chr9:131744902 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_28331 0 0 1 0 2 NUP188 chr9:131744980 5'GT 131744980 Upstream 79bp 25790 chr4 167020586 167020586 1 + G T ACC 167020587 + 167020567 167020607 41 CCTTCCAGACATTTGAAGTGGAGGAAGAAGCAGACTGTGGC CCTTCCAGACATTTGAAGTTGAGGAAGAAGCAGACTGTGGC < 41bp 0.387848497863966 0.711382307644598 NA NA prediction 0.422764615289196 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:167020587 chr4:167020586 synonymous SNV . 0 20 hm7G_associated_SNPs_28333 0 0 0 0 1 TLL1 chr4:167020679 5'GT 167020679 Upstream 94bp 25791 chr17 73566141 73566141 1 + G A SKCM 73566142 + 73566122 73566162 41 GAGGGCTACCGCTGGAAGGGGCACGAGCGCCTGGCAGCCCG GAGGGCTACCGCTGGAAGGAGCACGAGCGCCTGGCAGCCCG < 41bp 0.478032856917513 0.711382034564426 NA NA prediction 0.422764069128853 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73566142 chr17:73566141 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28334 0 0 1 0 1 LLGL2 chr17:73566044 3'AG 73566044 Downstream 98bp 25792 chrX 153690570 153690570 1 + G A SKCM 153690571 + 153690551 153690591 41 GCTGGCCGACAGCACCGACGGCATGGCCAGCGTGGCCGCCT GCTGGCCGACAGCACCGACAGCATGGCCAGCGTGGCCGCCT < 41bp 0.569563563855764 0.780942951039027 NA NA prediction 0.422758774366526 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153690571 chrX:153690570 nonsynonymous SNV 0.106 1 20 hm7G_associated_SNPs_28335 0 0 1 0 1 PLXNA3 chrX:153690650 5'GT 153690650 Upstream 81bp 25793 chr19 14067188 14067188 1 + G A GBM 14067189 + 14067169 14067209 41 CCGAATGCACAGTGCCTACGGCATGGCTTCATGCTGCACAC CCGAATGCACAGTGCCTACAGCATGGCTTCATGCTGCACAC < 41bp 0.560213015352575 0.771591121491968 NA NA prediction 0.422756212278785 Functional Gain - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14067189 chr19:14067188 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_28336 0 0 0 0 1 DCAF15 chr19:14067164 3'AG 14067164 Downstream 25bp 25794 chr1 180910191 180910191 1 + G A LUAD 180910192 + 180910172 180910212 41 GTGTTTCAGAGCATCAGCAGGAGCTGGCACAGGACCCGGCT GTGTTTCAGAGCATCAGCAAGAGCTGGCACAGGACCCGGCT < 41bp 0.534867187934089 0.746244404940567 NA NA prediction 0.422754434012957 Functional Gain - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180910192 chr1:180910191 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_28337 0 0 0 0 1 KIAA1614 chr1:180910181 3'AG 180910181 Downstream 11bp 25795 chr1 156843687 156843687 1 + C T COAD 156843688 + 156843668 156843708 41 ACCCCTTCGGCCAGGCCTCCGCCTCCATCATGGCTGCCTTC ACCCCTTCGGCCAGGCCTCTGCCTCCATCATGGCTGCCTTC < 41bp 0.506123248690956 0.717498146836958 NA NA prediction 0.422749796292003 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156843688 chr1:156843687 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28338 0 0 0 0 1 NTRK1 chr1:156843751 5'GT 156843751 Upstream 65bp 25796 chr12 49935464 49935464 1 + G A LGG 49935465 + 49935445 49935485 41 CCCATAAAGAATGAGAAAGGGGAGGTGGCTCTCTTCCTAGT CCCATAAAGAATGAGAAAGAGGAGGTGGCTCTCTTCCTAGT < 41bp 0.518177256815153 0.729546329266688 NA NA prediction 0.42273814490307 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49935465 chr12:49935464 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28340 0 0 0 0 2 KCNH3 chr12:49935413 3'AG 49935413 Downstream 52bp 25797 chr12 49935464 49935464 1 + G A LGG 49935465 + 49935445 49935485 41 CCCATAAAGAATGAGAAAGGGGAGGTGGCTCTCTTCCTAGT CCCATAAAGAATGAGAAAGAGGAGGTGGCTCTCTTCCTAGT < 41bp 0.518177256815153 0.729546329266688 NA NA prediction 0.42273814490307 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49935465 chr12:49935464 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28340 0 0 0 0 2 KCNH3 chr12:49935547 5'GT 49935547 Upstream 84bp 25798 chr2 68765343 68765343 1 + G T LUAD 68765344 + 68765324 68765364 41 GAGGACATCCTGCATGTATGGGGCAAACTGCTATAGGTAAA GAGGACATCCTGCATGTATTGGGCAAACTGCTATAGGTAAA < 41bp 0.385293688189004 0.711369028576944 NA NA prediction 0.422738057153888 Functional Gain - APLF ENSG00000169621 CDS Human protein_coding chr2:68765344 chr2:68765343 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_28341 0 0 0 0 1 APLF chr2:68765359 5'GT 68765359 Upstream 17bp 25799 chr16 68943228 68943228 1 + C T UCEC 68943229 + 68943209 68943249 41 TCTTGTGGAAGGCCAAGAGCGGAAGCTGCTTGTCCTGCAGC TCTTGTGGAAGGCCAAGAGTGGAAGCTGCTTGTCCTGCAGC < 41bp 0.497931237498902 0.711366422661425 NA NA prediction 0.42273284532285 Functional Gain - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68943229 chr16:68943228 nonsynonymous SNV 0.941 1 20 hm7G_associated_SNPs_28344 0 0 1 0 1 TANGO6 chr16:68943305 5'GT 68943305 Upstream 78bp 25800 chr3 183503992 183503992 1 + C T UCEC 183503993 + 183503973 183504013 41 CCAGCCACCTCACAGCTCTCGAAGCCTGGAACCACAATGCT CCAGCCACCTCACAGCTCTTGAAGCCTGGAACCACAATGCT < 41bp 0.496800246230688 0.711365747228359 NA NA prediction 0.422731494456717 Functional Gain - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183503993 chr3:183503992 nonsynonymous SNV 0.812 3 20 hm7G_associated_SNPs_28345 0 0 1 0 2 YEATS2 chr3:183503913 3'AG 183503913 Downstream 80bp 25801 chr3 183503992 183503992 1 + C T UCEC 183503993 + 183503973 183504013 41 CCAGCCACCTCACAGCTCTCGAAGCCTGGAACCACAATGCT CCAGCCACCTCACAGCTCTTGAAGCCTGGAACCACAATGCT < 41bp 0.496800246230688 0.711365747228359 NA NA prediction 0.422731494456717 Functional Gain - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183503993 chr3:183503992 nonsynonymous SNV 0.812 3 20 hm7G_associated_SNPs_28345 0 0 1 0 2 YEATS2 chr3:183504089 5'GT 183504089 Upstream 98bp 25802 chr19 14029801 14029801 1 + G T rs201420492 14029802 + 14029782 14029822 41 ACCAGGTGGCCGCAGCCCAGGCCAAGAGCAAGGGGGACCAG ACCAGGTGGCCGCAGCCCATGCCAAGAGCAAGGGGGACCAG < 41bp 0.705281112992993 0.916646532662261 NA NA prediction 0.422730839338538 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14029802 chr19:14029801 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28346 0 0 0 0 2 CC2D1A chr19:14029725 3'AG 14029725 Downstream 77bp 25803 chr19 14029801 14029801 1 + G T rs201420492 14029802 + 14029782 14029822 41 ACCAGGTGGCCGCAGCCCAGGCCAAGAGCAAGGGGGACCAG ACCAGGTGGCCGCAGCCCATGCCAAGAGCAAGGGGGACCAG < 41bp 0.705281112992993 0.916646532662261 NA NA prediction 0.422730839338538 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14029802 chr19:14029801 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28346 0 0 0 0 2 CC2D1A chr19:14029855 5'GT 14029855 Upstream 55bp 25804 chr16 31500465 31500465 1 + G A UCEC 31500466 + 31500446 31500486 41 CGCCTTCTGGGGACTCATCGGGGGCCTGCTGATGGGCCTGG CGCCTTCTGGGGACTCATCAGGGGCCTGCTGATGGGCCTGG < 41bp 0.541129325248025 0.752489221684516 NA NA prediction 0.422719792872982 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31500466 chr16:31500465 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_28347 0 0 0 1 1 SLC5A2 chr16:31500444 3'AG 31500444 Downstream 22bp 25805 chr2 74900622 74900622 1 + G T LUAD 74900623 + 74900603 74900643 41 CACTGTGAAAAACTACCTGGGGACGGAGCCAATTATCACCA CACTGTGAAAAACTACCTGTGGACGGAGCCAATTATCACCA < 41bp 0.353011751363968 0.711357266694013 NA NA prediction 0.422714533388026 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74900623 chr2:74900622 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_28350 0 0 0 0 2 SEMA4F chr2:74900584 3'AG 74900584 Downstream 39bp 25806 chr2 74900622 74900622 1 + G T LUAD 74900623 + 74900603 74900643 41 CACTGTGAAAAACTACCTGGGGACGGAGCCAATTATCACCA CACTGTGAAAAACTACCTGTGGACGGAGCCAATTATCACCA < 41bp 0.353011751363968 0.711357266694013 NA NA prediction 0.422714533388026 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74900623 chr2:74900622 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_28350 0 0 0 0 2 SEMA4F chr2:74900703 5'GT 74900703 Upstream 82bp 25807 chr12 109629465 109629465 1 + G T UCEC 109629466 + 109629446 109629486 41 TCCATCCGAGGCGACTTTAGGACTACCGTGGAATACCTCAT TCCATCCGAGGCGACTTTATGACTACCGTGGAATACCTCAT < 41bp 0.37434987515967 0.711353793560843 NA NA prediction 0.422707587121685 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109629466 chr12:109629465 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_28352 0 0 1 0 1 ACACB chr12:109629418 3'AG 109629418 Downstream 48bp 25808 chr2 219221846 219221846 1 + G A rs4324314 219221847 + 219221827 219221867 41 CTAAGGACCACCAGCCCTCGGGTCCGGAGTGTCTGCCACTC CTAAGGACCACCAGCCCTCAGGTCCGGAGTGTCTGCCACTC < 41bp 0.586845176675644 0.798197566514413 NA NA prediction 0.42270477967754 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219221847 chr2:219221846 synonymous SNV . 0 20 hm7G_associated_SNPs_28353 0 0 0 0 2 CATIP chr2:219221818 3'AG 219221818 Downstream 29bp 25809 chr2 219221846 219221846 1 + G A rs4324314 219221847 + 219221827 219221867 41 CTAAGGACCACCAGCCCTCGGGTCCGGAGTGTCTGCCACTC CTAAGGACCACCAGCCCTCAGGTCCGGAGTGTCTGCCACTC < 41bp 0.586845176675644 0.798197566514413 NA NA prediction 0.42270477967754 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219221847 chr2:219221846 synonymous SNV . 0 20 hm7G_associated_SNPs_28353 0 0 0 0 2 CATIP chr2:219221910 5'GT 219221910 Upstream 65bp 25810 chr7 158715138 158715138 1 + C T LUSC 158715139 + 158715119 158715159 41 TCTCCGTTCACGACTTACCCGAGAAGAGCTTTGTGCCCCTG TCTCCGTTCACGACTTACCTGAGAAGAGCTTTGTGCCCCTG < 41bp 0.516343771593141 0.727695311804437 NA NA prediction 0.42270308042259 Functional Gain - WDR60 ENSG00000126870 CDS Human protein_coding chr7:158715139 chr7:158715138 synonymous SNV . 0 20 hm7G_associated_SNPs_28354 0 0 1 0 1 WDR60 chr7:158715068 3'AG 158715068 Downstream 71bp 25811 chr17 72920757 72920757 1 + G A SKCM 72920758 + 72920738 72920778 41 AGCTGGCCCAGGGCCCCAAGGAGAGCCCCCCGGCGCCGCGT AGCTGGCCCAGGGCCCCAAAGAGAGCCCCCCGGCGCCGCGT < 41bp 0.572225257262857 0.783576712667378 NA NA prediction 0.422702910809042 Functional Gain - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72920758 chr17:72920757 synonymous SNV . 0 20 hm7G_associated_SNPs_28355 0 0 1 0 1 OTOP2 chr17:72920695 3'AG 72920695 Downstream 63bp 25812 chr12 108600106 108600106 1 + G A LUAD 108600107 + 108600087 108600127 41 TGGATGACACCCAGAGTCGGGCCCTTCGAGGAGTGTCCTTT TGGATGACACCCAGAGTCGAGCCCTTCGAGGAGTGTCCTTT < 41bp 0.501508189273579 0.712859142551241 NA NA prediction 0.422701906555324 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108600107 chr12:108600106 synonymous SNV . 0 20 hm7G_associated_SNPs_28356 0 0 0 0 2 WSCD2 chr12:108600066 3'AG 108600066 Downstream 41bp 25813 chr12 108600106 108600106 1 + G A LUAD 108600107 + 108600087 108600127 41 TGGATGACACCCAGAGTCGGGCCCTTCGAGGAGTGTCCTTT TGGATGACACCCAGAGTCGAGCCCTTCGAGGAGTGTCCTTT < 41bp 0.501508189273579 0.712859142551241 NA NA prediction 0.422701906555324 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108600107 chr12:108600106 synonymous SNV . 0 20 hm7G_associated_SNPs_28356 0 0 0 0 2 WSCD2 chr12:108600180 5'GT 108600180 Upstream 75bp 25814 chr19 41509935 41509935 1 + G A rs142657251 41509936 + 41509916 41509956 41 AATATGGGGACGTCTTCACGGTACACCTGGGACCGAGGCCC AATATGGGGACGTCTTCACAGTACACCTGGGACCGAGGCCC < 41bp 0.516614662258466 0.72796560203943 NA NA prediction 0.422701879561929 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41509936 chr19:41509935 synonymous SNV . 0 20 hm7G_associated_SNPs_28357 0 0 0 0 1 CYP2B6 chr19:41509906 3'AG 41509906 Downstream 30bp 25815 chr5 94903724 94903724 1 + G T LUAD 94903725 + 94903705 94903745 41 CACAGAAATTTGGGAAACTGGACTATACTTCAGGACATCAC CACAGAAATTTGGGAAACTTGACTATACTTCAGGACATCAC < 41bp 0.392702060521595 0.711348740192577 NA NA prediction 0.422697480385153 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94903725 chr5:94903724 synonymous SNV . 0 20 hm7G_associated_SNPs_28358 0 0 1 1 1 ARSK chr5:94903753 5'GT 94903753 Upstream 30bp 25816 chr9 131115746 131115746 1 + G A UCEC 131115747 + 131115727 131115767 41 TCCTTCGTGTACCCCATCCGGTTGGTACGTGTCAACGAGGA TCCTTCGTGTACCCCATCCAGTTGGTACGTGTCAACGAGGA < 41bp 0.510400576638901 0.7217407774838 NA NA prediction 0.422680401689798 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131115747 chr9:131115746 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_28360 0 0 0 0 2 SLC27A4 chr9:131115694 3'AG 131115694 Downstream 53bp 25817 chr9 131115746 131115746 1 + G A UCEC 131115747 + 131115727 131115767 41 TCCTTCGTGTACCCCATCCGGTTGGTACGTGTCAACGAGGA TCCTTCGTGTACCCCATCCAGTTGGTACGTGTCAACGAGGA < 41bp 0.510400576638901 0.7217407774838 NA NA prediction 0.422680401689798 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131115747 chr9:131115746 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_28360 0 0 0 0 2 SLC27A4 chr9:131115820 5'GT 131115820 Upstream 75bp 25818 chr19 11461642 11461642 1 + C T UCEC 11461643 + 11461623 11461663 41 GCAGCGGGCCCGCACCACTCGCTGCCTGCAGCTGCTGGCCC GCAGCGGGCCCGCACCACTTGCTGCCTGCAGCTGCTGGCCC < 41bp 0.501343270986974 0.712682727578966 NA NA prediction 0.422678913183984 Functional Gain - CCDC159 ENSG00000183401 CDS Human protein_coding chr19:11461643 chr19:11461642 nonsynonymous SNV 0.926 3 20 hm7G_associated_SNPs_28361 0 0 1 0 1 CCDC159 chr19:11461679 5'GT 11461679 Upstream 38bp 25819 chr5 115338980 115338980 1 + G T LUAD 115338981 + 115338961 115339001 41 TCAGATTCTGACCATGACTGGGTGATTTTGAATTTGAATAT TCAGATTCTGACCATGACTTGGTGATTTTGAATTTGAATAT < 41bp 0.388538153037274 0.711338352902302 NA NA prediction 0.422676705804604 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115338981 chr5:115338980 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28362 0 0 1 0 2 LVRN chr5:115338938 3'AG 115338938 Downstream 43bp 25820 chr5 115338980 115338980 1 + G T LUAD 115338981 + 115338961 115339001 41 TCAGATTCTGACCATGACTGGGTGATTTTGAATTTGAATAT TCAGATTCTGACCATGACTTGGTGATTTTGAATTTGAATAT < 41bp 0.388538153037274 0.711338352902302 NA NA prediction 0.422676705804604 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115338981 chr5:115338980 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28362 0 0 1 0 2 LVRN chr5:115339077 5'GT 115339077 Upstream 98bp 25821 chr10 127434426 127434426 1 + C T LUAD 127434427 + 127434407 127434447 41 AGGCTCATGCGGATTTGTGCGCAGGCCCACTGTGGTGCAGG AGGCTCATGCGGATTTGTGTGCAGGCCCACTGTGGTGCAGG < 41bp 0.514902670963765 0.726232692933762 NA NA prediction 0.422660043939993 Functional Gain - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127434427 chr10:127434426 nonsynonymous SNV 0.937 4 20 hm7G_associated_SNPs_28363 0 0 1 0 1 EDRF1 chr10:127434499 5'GT 127434499 Upstream 74bp 25822 chr7 101063353 101063353 1 + G A SKCM 101063354 + 101063334 101063374 41 GTGTACCAGAGCTGCCGGTGGCCGGGGCCCTGCGCCAACCT GTGTACCAGAGCTGCCGGTAGCCGGGGCCCTGCGCCAACCT < 41bp 0.478804678669382 0.711328218193611 NA NA prediction 0.422656436387222 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101063354 chr7:101063353 stopgain 0.986 0 20 hm7G_associated_SNPs_28364 0 0 0 0 2 COL26A1 chr7:101063258 3'AG 101063258 Downstream 96bp 25823 chr7 101063353 101063353 1 + G A SKCM 101063354 + 101063334 101063374 41 GTGTACCAGAGCTGCCGGTGGCCGGGGCCCTGCGCCAACCT GTGTACCAGAGCTGCCGGTAGCCGGGGCCCTGCGCCAACCT < 41bp 0.478804678669382 0.711328218193611 NA NA prediction 0.422656436387222 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101063354 chr7:101063353 stopgain 0.986 0 20 hm7G_associated_SNPs_28364 0 0 0 0 2 COL26A1 chr7:101063380 5'GT 101063380 Upstream 28bp 25824 chr19 36278604 36278604 1 + G A BLCA 36278605 + 36278585 36278625 41 TGCCTGCCACCCTTCCTCGGGGTCCCCAAGCCAGGCTTGTA TGCCTGCCACCCTTCCTCGAGGTCCCCAAGCCAGGCTTGTA < 41bp 0.491990161147662 0.711327727831595 NA NA prediction 0.42265545566319 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36278605 chr19:36278604 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_28365 0 0 1 0 1 ARHGAP33 chr19:36278546 3'AG 36278546 Downstream 59bp 25825 chr19 14139122 14139122 1 + G A STAD 14139123 + 14139103 14139143 41 TTACGGGGTCAGGCTTTGCGGCCGAGAATTCATCCGAGCAG TTACGGGGTCAGGCTTTGCAGCCGAGAATTCATCCGAGCAG < 41bp 0.531171048006388 0.742498001151612 NA NA prediction 0.422653906290447 Functional Gain - RLN3 ENSG00000171136 CDS Human protein_coding chr19:14139123 chr19:14139122 nonsynonymous SNV 0.731 5 20 hm7G_associated_SNPs_28366 0 0 0 0 1 RLN3 chr19:14139206 5'GT 14139206 Upstream 85bp 25826 chr7 100160246 100160246 1 + C T UCEC 100160247 + 100160227 100160267 41 ATGGCTGGCCAGGTCCCCCCGCTCCAGTCTGTCACGATGGG ATGGCTGGCCAGGTCCCCCTGCTCCAGTCTGTCACGATGGG < 41bp 0.508245560452146 0.719571977155014 NA NA prediction 0.422652833405736 Functional Gain - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100160247 chr7:100160246 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_28367 0 0 1 0 2 AGFG2 chr7:100160217 3'AG 100160217 Downstream 30bp 25827 chr7 100160246 100160246 1 + C T UCEC 100160247 + 100160227 100160267 41 ATGGCTGGCCAGGTCCCCCCGCTCCAGTCTGTCACGATGGG ATGGCTGGCCAGGTCCCCCTGCTCCAGTCTGTCACGATGGG < 41bp 0.508245560452146 0.719571977155014 NA NA prediction 0.422652833405736 Functional Gain - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100160247 chr7:100160246 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_28367 0 0 1 0 2 AGFG2 chr7:100160305 5'GT 100160305 Upstream 60bp 25828 chr11 44148422 44148422 1 + C T COAD 44148423 + 44148403 44148443 41 TGGGCCAGGCAGTATTGAGCGATGTGTTACAAGCTGGCTGT TGGGCCAGGCAGTATTGAGTGATGTGTTACAAGCTGGCTGT < 41bp 0.520322387966113 0.731648628682038 NA NA prediction 0.42265248143185 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148423 chr11:44148422 synonymous SNV . 0 20 hm7G_associated_SNPs_28368 0 0 1 0 2 EXT2 chr11:44148366 3'AG 44148366 Downstream 57bp 25829 chr11 44148422 44148422 1 + C T COAD 44148423 + 44148403 44148443 41 TGGGCCAGGCAGTATTGAGCGATGTGTTACAAGCTGGCTGT TGGGCCAGGCAGTATTGAGTGATGTGTTACAAGCTGGCTGT < 41bp 0.520322387966113 0.731648628682038 NA NA prediction 0.42265248143185 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44148423 chr11:44148422 synonymous SNV . 0 20 hm7G_associated_SNPs_28368 0 0 1 0 2 EXT2 chr11:44148505 5'GT 44148505 Upstream 84bp 25830 chr18 8718623 8718623 1 + C T SKCM 8718624 + 8718604 8718644 41 GGTGGATGGTGAGCTTATTCGAAGCCTGGAGCAGGACTTGA GGTGGATGGTGAGCTTATTTGAAGCCTGGAGCAGGACTTGA < 41bp 0.517285859096388 0.728610070472503 NA NA prediction 0.42264842275223 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8718624 chr18:8718623 stopgain 0.233 1 20 hm7G_associated_SNPs_28369 0 0 1 0 1 MTCL1 chr18:8718646 5'GT 8718646 Upstream 24bp 25831 chr14 94582170 94582170 1 + G A BLCA 94582171 + 94582151 94582191 41 GTGCCATGGGCTTCACTGCGGCGGGAATCGCCTCGTCCTCC GTGCCATGGGCTTCACTGCAGCGGGAATCGCCTCGTCCTCC < 41bp 0.526584045602513 0.737901277993703 NA NA prediction 0.42263446478238 Functional Gain - IFI27 ENSG00000165949 CDS Human protein_coding chr14:94582171 chr14:94582170 synonymous SNV . 0 20 hm7G_associated_SNPs_28373 0 0 0 0 1 IFI27 chr14:94582127 3'AG 94582127 Downstream 44bp 25832 chr13 113088826 113088826 1 + G T BRCA 113088827 + 113088807 113088847 41 TTCCATAAAGAGCAGCAGAGGACCAGCGCACAGAGGAGGAG TTCCATAAAGAGCAGCAGATGACCAGCGCACAGAGGAGGAG < 41bp 0.672035380585174 0.883348864480867 NA NA prediction 0.422626967791386 Functional Gain - SPACA7 ENSG00000153498 CDS Human protein_coding chr13:113088827 chr13:113088826 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_28375 0 0 0 0 1 SPACA7 chr13:113088799 3'AG 113088799 Downstream 28bp 25833 chr17 77755584 77755584 1 + G A HNSC 77755585 + 77755565 77755605 41 GCCATGTCCTCCTGCAGCCGGCGCTCCAAGCTCAAGGTGGG GCCATGTCCTCCTGCAGCCAGCGCTCCAAGCTCAAGGTGGG < 41bp 0.549179958575183 0.760493380956467 NA NA prediction 0.422626844762568 Functional Gain - CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755585 chr17:77755584 nonsynonymous SNV 0.196 2 20 hm7G_associated_SNPs_28376 0 0 1 0 2 CBX2 chr17:77755495 3'AG 77755495 Downstream 90bp 25834 chr17 77755584 77755584 1 + G A HNSC 77755585 + 77755565 77755605 41 GCCATGTCCTCCTGCAGCCGGCGCTCCAAGCTCAAGGTGGG GCCATGTCCTCCTGCAGCCAGCGCTCCAAGCTCAAGGTGGG < 41bp 0.549179958575183 0.760493380956467 NA NA prediction 0.422626844762568 Functional Gain - CBX2 ENSG00000173894 CDS Human protein_coding chr17:77755585 chr17:77755584 nonsynonymous SNV 0.196 2 20 hm7G_associated_SNPs_28376 0 0 1 0 2 CBX2 chr17:77755600 5'GT 77755600 Upstream 17bp 25835 chr9 131821510 131821510 1 + C T rs142915961 131821511 + 131821491 131821531 41 ACCACCTGCAGGAGGAGTTCGGCTCCACCTTCCCCGCAGAC ACCACCTGCAGGAGGAGTTTGGCTCCACCTTCCCCGCAGAC < 41bp 0.508325565353616 0.719637505727472 NA NA prediction 0.422623880747712 Functional Gain - MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131821511 chr9:131821510 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28377 0 0 1 0 2 MIGA2 chr9:131821433 3'AG 131821433 Downstream 78bp 25836 chr9 131821510 131821510 1 + C T rs142915961 131821511 + 131821491 131821531 41 ACCACCTGCAGGAGGAGTTCGGCTCCACCTTCCCCGCAGAC ACCACCTGCAGGAGGAGTTTGGCTCCACCTTCCCCGCAGAC < 41bp 0.508325565353616 0.719637505727472 NA NA prediction 0.422623880747712 Functional Gain - MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131821511 chr9:131821510 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28377 0 0 1 0 2 MIGA2 chr9:131821550 5'GT 131821550 Upstream 41bp 25837 chr8 11412934 11412934 1 + G A rs141865425 11412935 + 11412915 11412955 41 GATGAATGGGAGATCCCCCGGCAGTCTCTCAGGCTGGTCAG GATGAATGGGAGATCCCCCAGCAGTCTCTCAGGCTGGTCAG < 41bp 0.556213247716322 0.767524614200394 NA NA prediction 0.422622732968144 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11412935 chr8:11412934 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_28378 2 0 0 0 2 BLK chr8:11412841 3'AG 11412841 Downstream 94bp 25838 chr8 11412934 11412934 1 + G A rs141865425 11412935 + 11412915 11412955 41 GATGAATGGGAGATCCCCCGGCAGTCTCTCAGGCTGGTCAG GATGAATGGGAGATCCCCCAGCAGTCTCTCAGGCTGGTCAG < 41bp 0.556213247716322 0.767524614200394 NA NA prediction 0.422622732968144 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11412935 chr8:11412934 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_28378 2 0 0 0 2 BLK chr8:11412993 5'GT 11412993 Upstream 60bp 25839 chr19 39994804 39994804 1 + C T CESC 39994805 + 39994785 39994825 41 TGGACTGGACCCCTCTGCACGGTCCCTGTCTCCACCAGCAG TGGACTGGACCCCTCTGCATGGTCCCTGTCTCCACCAGCAG < 41bp 0.500836947388419 0.712146937251516 NA NA prediction 0.422619979726193 Functional Gain - DLL3 ENSG00000090932 CDS Human protein_coding chr19:39994805 chr19:39994804 nonsynonymous SNV 0.167 3 20 hm7G_associated_SNPs_28380 0 0 0 0 1 DLL3 chr19:39994711 3'AG 39994711 Downstream 94bp 25840 chrX 9660260 9660260 1 + C T COAD 9660261 + 9660241 9660281 41 GAGGGGGGCCATGACGTCCCGAGTAACAAAGACGTCACCTC GAGGGGGGCCATGACGTCCTGAGTAACAAAGACGTCACCTC < 41bp 0.502266096755261 0.713570249494497 NA NA prediction 0.422608305478473 Functional Gain - TBL1X ENSG00000101849 CDS Human protein_coding chrX:9660261 chrX:9660260 nonsynonymous SNV 0.661 2 20 hm7G_associated_SNPs_28381 0 0 1 0 1 TBL1X chrX:9660294 5'GT 9660294 Upstream 35bp 25841 chr11 67176589 67176589 1 + G T UCEC 67176590 + 67176570 67176610 41 CCGCGCAGCTGCAGGAGGAGGCCTTCATGTCACAGGTGGGT CCGCGCAGCTGCAGGAGGATGCCTTCATGTCACAGGTGGGT < 41bp 0.364020980468934 0.711303292680872 NA NA prediction 0.422606585361744 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67176590 chr11:67176589 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_28382 0 0 0 0 1 TBC1D10C chr11:67176604 5'GT 67176604 Upstream 16bp 25842 chr14 65520040 65520040 1 + C T DLBC 65520041 + 65520021 65520061 41 ATGTGCTGCCAGTGCCCTGCGGGGGGGCTTCTGGATAAACC ATGTGCTGCCAGTGCCCTGTGGGGGGGCTTCTGGATAAACC < 41bp 0.511509253581759 0.722809013656939 NA NA prediction 0.422599520150359 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65520041 chr14:65520040 nonsynonymous SNV 0.191 0 20 hm7G_associated_SNPs_28383 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65519956 3'AG 65519956 Downstream 85bp 25843 chr14 65520040 65520040 1 + C T DLBC 65520041 + 65520021 65520061 41 ATGTGCTGCCAGTGCCCTGCGGGGGGGCTTCTGGATAAACC ATGTGCTGCCAGTGCCCTGTGGGGGGGCTTCTGGATAAACC < 41bp 0.511509253581759 0.722809013656939 NA NA prediction 0.422599520150359 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65520041 chr14:65520040 nonsynonymous SNV 0.191 0 20 hm7G_associated_SNPs_28383 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65520067 5'GT 65520067 Upstream 28bp 25844 chr6 43269343 43269343 1 + G A SKCM 43269344 + 43269324 43269364 41 GTGAGCAAAGTGGCCGCCGGGGAACGGGTGGTCCGAAGACC GTGAGCAAAGTGGCCGCCGAGGAACGGGTGGTCCGAAGACC < 41bp 0.568333271538908 0.77963170720306 NA NA prediction 0.422596871328303 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43269344 chr6:43269343 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_28384 0 0 1 0 2 SLC22A7 chr6:43269321 3'AG 43269321 Downstream 23bp 25845 chr6 43269343 43269343 1 + G A SKCM 43269344 + 43269324 43269364 41 GTGAGCAAAGTGGCCGCCGGGGAACGGGTGGTCCGAAGACC GTGAGCAAAGTGGCCGCCGAGGAACGGGTGGTCCGAAGACC < 41bp 0.568333271538908 0.77963170720306 NA NA prediction 0.422596871328303 Functional Gain - SLC22A7 ENSG00000137204 CDS Human protein_coding chr6:43269344 chr6:43269343 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_28384 0 0 1 0 2 SLC22A7 chr6:43269430 5'GT 43269430 Upstream 88bp 25846 chr7 2566028 2566028 1 + G A rs12700028 2566029 + 2566009 2566049 41 TGCAGCAGGTGCCCACCTCGGAGCTCCACGAGCAGGTGCAC TGCAGCAGGTGCCCACCTCAGAGCTCCACGAGCAGGTGCAC < 41bp 0.513442618105002 0.724738449158818 NA NA prediction 0.422591662107632 Functional Gain - LFNG ENSG00000106003 CDS Human protein_coding chr7:2566029 chr7:2566028 synonymous SNV . 0 20 hm7G_associated_SNPs_28385 1 0 0 0 1 LFNG chr7:2566043 5'GT 2566043 Upstream 16bp 25847 chr13 24233225 24233225 1 + C T STAD 24233226 + 24233206 24233246 41 CTCGTGAAGATCGCGTCCACGGCCTCCAGCCCACGGGACAC CTCGTGAAGATCGCGTCCATGGCCTCCAGCCCACGGGACAC < 41bp 0.496063243660869 0.711284146029224 NA NA prediction 0.422568292058447 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24233226 chr13:24233225 nonsynonymous SNV 0.899 4 20 hm7G_associated_SNPs_28387 0 0 1 0 1 TNFRSF19 chr13:24233189 3'AG 24233189 Downstream 37bp 25848 chr11 15222403 15222403 1 + C T STAD 15222404 + 15222384 15222424 41 AGCACTCTTCAAGGTTTGCCGGCAGGACAGTTTCCGGTGCT AGCACTCTTCAAGGTTTGCTGGCAGGACAGTTTCCGGTGCT < 41bp 0.513032794297841 0.724315983493929 NA NA prediction 0.422566378392176 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15222404 chr11:15222403 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28388 0 0 0 0 2 INSC chr11:15222370 3'AG 15222370 Downstream 34bp 25849 chr11 15222403 15222403 1 + C T STAD 15222404 + 15222384 15222424 41 AGCACTCTTCAAGGTTTGCCGGCAGGACAGTTTCCGGTGCT AGCACTCTTCAAGGTTTGCTGGCAGGACAGTTTCCGGTGCT < 41bp 0.513032794297841 0.724315983493929 NA NA prediction 0.422566378392176 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15222404 chr11:15222403 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28388 0 0 0 0 2 INSC chr11:15222495 5'GT 15222495 Upstream 93bp 25850 chr17 40847561 40847561 1 + G A BRCA 40847562 + 40847542 40847582 41 TTGGTGGTTTCTTTGAGCCGGGCACCTGGATGCGCTATAAC TTGGTGGTTTCTTTGAGCCAGGCACCTGGATGCGCTATAAC < 41bp 0.513735709246399 0.725017030654793 NA NA prediction 0.422562642816787 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40847562 chr17:40847561 synonymous SNV . 0 20 hm7G_associated_SNPs_28389 0 0 0 0 1 CNTNAP1 chr17:40847539 3'AG 40847539 Downstream 23bp 25851 chr11 6415463 6415463 1 + G A rs1050239 6415464 + 6415444 6415484 41 AATAGATGGAAACTACTCCGGGAGCTCTCACGTGGTCCTGG AATAGATGGAAACTACTCCAGGAGCTCTCACGTGGTCCTGG < 41bp 0.514435156130116 0.725716053771999 NA NA prediction 0.422561795283765 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6415464 chr11:6415463 nonsynonymous SNV 0.183 2 20 hm7G_associated_SNPs_28390 2 1 0 0 2 SMPD1 chr11:6415408 3'AG 6415408 Downstream 56bp 25852 chr11 6415463 6415463 1 + G A rs1050239 6415464 + 6415444 6415484 41 AATAGATGGAAACTACTCCGGGAGCTCTCACGTGGTCCTGG AATAGATGGAAACTACTCCAGGAGCTCTCACGTGGTCCTGG < 41bp 0.514435156130116 0.725716053771999 NA NA prediction 0.422561795283765 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6415464 chr11:6415463 nonsynonymous SNV 0.183 2 20 hm7G_associated_SNPs_28390 2 1 0 0 2 SMPD1 chr11:6415428 3'AG 6415428 Downstream 36bp 25853 chr8 86386585 86386585 1 + G T HNSC 86386586 + 86386566 86386606 41 ACTGGAACACCAAATATGGGGATTTTGGGAAAGCTGTGCAG ACTGGAACACCAAATATGGTGATTTTGGGAAAGCTGTGCAG < 41bp 0.693621579955002 0.904902372010493 NA NA prediction 0.422561584110982 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86386586 chr8:86386585 stopgain . 0 20 hm7G_associated_SNPs_28391 0 0 1 0 2 CA2 chr8:86386553 3'AG 86386553 Downstream 33bp 25854 chr8 86386585 86386585 1 + G T HNSC 86386586 + 86386566 86386606 41 ACTGGAACACCAAATATGGGGATTTTGGGAAAGCTGTGCAG ACTGGAACACCAAATATGGTGATTTTGGGAAAGCTGTGCAG < 41bp 0.693621579955002 0.904902372010493 NA NA prediction 0.422561584110982 Functional Gain - CA2 ENSG00000104267 CDS Human protein_coding chr8:86386586 chr8:86386585 stopgain . 0 20 hm7G_associated_SNPs_28391 0 0 1 0 2 CA2 chr8:86386645 5'GT 86386645 Upstream 61bp 25855 chr11 118764380 118764380 1 + G A SKCM 118764381 + 118764361 118764401 41 TCTCTGCCCTGCCACAGAGGGGCCCCTCATGGCCTCCTTCA TCTCTGCCCTGCCACAGAGAGGCCCCTCATGGCCTCCTTCA < 41bp 0.560172788060685 0.771453377838413 NA NA prediction 0.422561179555454 Functional Gain - CXCR5 ENSG00000160683 CDS Human protein_coding chr11:118764381 chr11:118764380 nonsynonymous SNV 0.055 1 20 hm7G_associated_SNPs_28392 0 0 0 0 1 CXCR5 chr11:118764305 3'AG 118764305 Downstream 76bp 25856 chr21 46603320 46603320 1 + C T LUAD 46603321 + 46603301 46603341 41 CATCTTTCAGAAATCAGAGCGAGGGGGGTTTAGGCTGAAGG CATCTTTCAGAAATCAGAGTGAGGGGGGTTTAGGCTGAAGG < 41bp 0.50021213011017 0.71148814192941 NA NA prediction 0.42255202363848 Functional Gain - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46603321 chr21:46603320 stopgain 0.966 1 20 hm7G_associated_SNPs_28393 0 0 0 0 1 ADARB1 chr21:46603277 3'AG 46603277 Downstream 44bp 25857 chr16 31427951 31427951 1 + G A LUAD 31427952 + 31427932 31427972 41 GCAGGGCTGTCGCACCGACGGGTGTCAGGAGCCCAGGTAAC GCAGGGCTGTCGCACCGACAGGTGTCAGGAGCCCAGGTAAC < 41bp 0.542551437444141 0.75382722220253 NA NA prediction 0.422551569516778 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31427952 chr16:31427951 nonsynonymous SNV 0.365 2 20 hm7G_associated_SNPs_28394 0 0 0 0 1 ITGAD chr16:31427967 5'GT 31427967 Upstream 17bp 25858 chr18 48591896 48591896 1 + C T COAD 48591897 + 48591877 48591917 41 TTGTTACTGTTGATGGATACGTGGACCCTTCTGGAGGAGAT TTGTTACTGTTGATGGATATGTGGACCCTTCTGGAGGAGAT < 41bp 0.50323559412394 0.714509808664175 NA NA prediction 0.422548429080469 Functional Gain - SMAD4 ENSG00000141646 CDS Human protein_coding chr18:48591897 chr18:48591896 synonymous SNV . 0 20 hm7G_associated_SNPs_28396 2 0 1 0 1 SMAD4 chr18:48591976 5'GT 48591976 Upstream 81bp 25859 chr11 63764088 63764088 1 + G A SKCM 63764089 + 63764069 63764109 41 TCGGATTCTCCCACTTGGAGGCACTGCTGGATGACAGCAAG TCGGATTCTCCCACTTGGAAGCACTGCTGGATGACAGCAAG < 41bp 0.548378215891493 0.759652273448025 NA NA prediction 0.422548115113063 Functional Gain - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764089 chr11:63764088 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28397 0 0 1 0 2 OTUB1 chr11:63764002 3'AG 63764002 Downstream 87bp 25860 chr11 63764088 63764088 1 + G A SKCM 63764089 + 63764069 63764109 41 TCGGATTCTCCCACTTGGAGGCACTGCTGGATGACAGCAAG TCGGATTCTCCCACTTGGAAGCACTGCTGGATGACAGCAAG < 41bp 0.548378215891493 0.759652273448025 NA NA prediction 0.422548115113063 Functional Gain - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764089 chr11:63764088 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28397 0 0 1 0 2 OTUB1 chr11:63764120 5'GT 63764120 Upstream 33bp 25861 chrX 18606106 18606106 1 + C T COAD 18606107 + 18606087 18606127 41 AAGTCCGTGGACATGTGGTCGGTGGGCTGTATTCTTGGGGA AAGTCCGTGGACATGTGGTTGGTGGGCTGTATTCTTGGGGA < 41bp 0.509763255710771 0.721033503723926 NA NA prediction 0.42254049602631 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18606107 chrX:18606106 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28398 3 0 0 0 1 CDKL5 chrX:18606074 3'AG 18606074 Downstream 33bp 25862 chr19 36370038 36370038 1 + C T BRCA 36370039 + 36370019 36370059 41 TGCTGATCATGGGAGCGGGCGGAGGCTCCCTCATCGTCCTC TGCTGATCATGGGAGCGGGTGGAGGCTCCCTCATCGTCCTC < 41bp 0.500594060322763 0.711858861561229 NA NA prediction 0.422529602476932 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370039 chr19:36370038 synonymous SNV . 0 20 hm7G_associated_SNPs_28400 0 0 1 0 2 APLP1 chr19:36369976 3'AG 36369976 Downstream 63bp 25863 chr19 36370038 36370038 1 + C T BRCA 36370039 + 36370019 36370059 41 TGCTGATCATGGGAGCGGGCGGAGGCTCCCTCATCGTCCTC TGCTGATCATGGGAGCGGGTGGAGGCTCCCTCATCGTCCTC < 41bp 0.500594060322763 0.711858861561229 NA NA prediction 0.422529602476932 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370039 chr19:36370038 synonymous SNV . 0 20 hm7G_associated_SNPs_28400 0 0 1 0 2 APLP1 chr19:36370119 5'GT 36370119 Upstream 82bp 25864 chr2 217293421 217293421 1 + C T UCEC 217293422 + 217293402 217293442 41 AAGACATCTCTCAGTCTCACGCCAGATGTCCCAGAGGCAGA AAGACATCTCTCAGTCTCATGCCAGATGTCCCAGAGGCAGA < 41bp 0.518502586531134 0.72976034950866 NA NA prediction 0.422515525955053 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217293422 chr2:217293421 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_28402 0 0 1 3 1 SMARCAL1 chr2:217293505 5'GT 217293505 Upstream 85bp 25865 chrX 128884525 128884525 1 + C T UCEC 128884526 + 128884506 128884546 41 CCGACTGCCGTCCTTCTGTCGGCGCTTGAGGAGACGGCCTG CCGACTGCCGTCCTTCTGTTGGCGCTTGAGGAGACGGCCTG < 41bp 0.522711263038019 0.73396843731786 NA NA prediction 0.422514348559683 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128884526 chrX:128884525 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_28403 0 0 0 0 2 XPNPEP2 chrX:128884444 3'AG 128884444 Downstream 82bp 25866 chrX 128884525 128884525 1 + C T UCEC 128884526 + 128884506 128884546 41 CCGACTGCCGTCCTTCTGTCGGCGCTTGAGGAGACGGCCTG CCGACTGCCGTCCTTCTGTTGGCGCTTGAGGAGACGGCCTG < 41bp 0.522711263038019 0.73396843731786 NA NA prediction 0.422514348559683 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128884526 chrX:128884525 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_28403 0 0 0 0 2 XPNPEP2 chrX:128884545 5'GT 128884545 Upstream 21bp 25867 chr3 184296215 184296215 1 + G A UCEC 184296216 + 184296196 184296236 41 CTACAGGAAGCAGCGACACGGCTCTGATTCGGAGTACACGG CTACAGGAAGCAGCGACACAGCTCTGATTCGGAGTACACGG < 41bp 0.538606057319744 0.749853504457494 NA NA prediction 0.4224948942755 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184296216 chr3:184296215 nonsynonymous SNV 0.465 0 20 hm7G_associated_SNPs_28405 0 0 0 0 2 EPHB3 chr3:184296202 3'AG 184296202 Downstream 14bp 25868 chr3 184296215 184296215 1 + G A UCEC 184296216 + 184296196 184296236 41 CTACAGGAAGCAGCGACACGGCTCTGATTCGGAGTACACGG CTACAGGAAGCAGCGACACAGCTCTGATTCGGAGTACACGG < 41bp 0.538606057319744 0.749853504457494 NA NA prediction 0.4224948942755 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184296216 chr3:184296215 nonsynonymous SNV 0.465 0 20 hm7G_associated_SNPs_28405 0 0 0 0 2 EPHB3 chr3:184296254 5'GT 184296254 Upstream 40bp 25869 chr21 46396679 46396679 1 + G A LIHC 46396680 + 46396660 46396700 41 TGGCCATCGGGCAGACGCTGGCCCGGCAGATGCAGCTGGAA TGGCCATCGGGCAGACGCTAGCCCGGCAGATGCAGCTGGAA < 41bp 0.481614958008033 0.711246385445877 NA NA prediction 0.422492770891754 Functional Gain - FAM207A ENSG00000160256 CDS Human protein_coding chr21:46396680 chr21:46396679 synonymous SNV . 0 20 hm7G_associated_SNPs_28406 0 0 1 0 1 FAM207A chr21:46396595 3'AG 46396595 Downstream 85bp 25870 chr19 18964097 18964097 1 + G A PRAD 18964098 + 18964078 18964118 41 GGGGATGAGATATGCCTGCGGTACAAAGGGGACCTTGCGCC GGGGATGAGATATGCCTGCAGTACAAAGGGGACCTTGCGCC < 41bp 0.514506972815266 0.725745864328434 NA NA prediction 0.422477783026336 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18964098 chr19:18964097 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28408 0 0 1 0 2 UPF1 chr19:18964061 3'AG 18964061 Downstream 37bp 25871 chr19 18964097 18964097 1 + G A PRAD 18964098 + 18964078 18964118 41 GGGGATGAGATATGCCTGCGGTACAAAGGGGACCTTGCGCC GGGGATGAGATATGCCTGCAGTACAAAGGGGACCTTGCGCC < 41bp 0.514506972815266 0.725745864328434 NA NA prediction 0.422477783026336 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18964098 chr19:18964097 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28408 0 0 1 0 2 UPF1 chr19:18964159 5'GT 18964159 Upstream 63bp 25872 chrX 138642958 138642958 1 + G T STAD 138642959 + 138642939 138642979 41 TCTATCGTTAATGAAAAATGGATTGTAACTGCTGCCCACTG TCTATCGTTAATGAAAAATTGATTGTAACTGCTGCCCACTG < 41bp 0.681989718223755 0.893225690419084 NA NA prediction 0.422471944390659 Functional Gain - F9 ENSG00000101981 CDS Human protein_coding chrX:138642959 chrX:138642958 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_28409 0 0 0 0 2 F9 chrX:138642900 3'AG 138642900 Downstream 59bp 25873 chrX 138642958 138642958 1 + G T STAD 138642959 + 138642939 138642979 41 TCTATCGTTAATGAAAAATGGATTGTAACTGCTGCCCACTG TCTATCGTTAATGAAAAATTGATTGTAACTGCTGCCCACTG < 41bp 0.681989718223755 0.893225690419084 NA NA prediction 0.422471944390659 Functional Gain - F9 ENSG00000101981 CDS Human protein_coding chrX:138642959 chrX:138642958 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_28409 0 0 0 0 2 F9 chrX:138643014 5'GT 138643014 Upstream 57bp 25874 chr8 36768479 36768479 1 + C T STAD 36768480 + 36768460 36768500 41 TATTCTGGAGACCTCCATGCGGCCAACATAGAGCAATGCTC TATTCTGGAGACCTCCATGTGGCCAACATAGAGCAATGCTC < 41bp 0.505195767765579 0.716430878340683 NA NA prediction 0.422470221150207 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36768480 chr8:36768479 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_28412 0 0 0 0 1 KCNU1 chr8:36768448 3'AG 36768448 Downstream 32bp 25875 chrX 140953268 140953268 1 + G A SKCM 140953269 + 140953249 140953289 41 CTGAGTAGCCCCGGAAAAAGGCCACAGATAAGGACTATTCT CTGAGTAGCCCCGGAAAAAAGCCACAGATAAGGACTATTCT < 41bp 0.493001682815837 0.71123381195327 NA NA prediction 0.422467623906541 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140953269 chrX:140953268 synonymous SNV . 0 20 hm7G_associated_SNPs_28413 0 0 0 0 1 MAGEC3 chrX:140953257 3'AG 140953257 Downstream 12bp 25876 chr19 40711825 40711825 1 + G T UCEC 40711826 + 40711806 40711846 41 TCTCCTTCCCAGGAGCTTCGGAGCCGTGAGGAGGAGCTGCT TCTCCTTCCCAGGAGCTTCTGAGCCGTGAGGAGGAGCTGCT < 41bp 0.69299987288812 0.904233272014047 NA NA prediction 0.422466798251854 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711826 chr19:40711825 nonsynonymous SNV 0.951 1 20 hm7G_associated_SNPs_28414 0 0 1 0 1 MAP3K10 chr19:40711818 3'AG 40711818 Downstream 8bp 25877 chr19 10570275 10570275 1 + G A HNSC 10570276 + 10570256 10570296 41 CCTGCCTGCTCTCAGGAGCGGGACCTGCTGAAGAAATTCCG CCTGCCTGCTCTCAGGAGCAGGACCTGCTGAAGAAATTCCG < 41bp 0.522174650714812 0.733401801613864 NA NA prediction 0.422454301798104 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10570276 chr19:10570275 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_28417 0 0 1 0 1 PDE4A chr19:10570271 3'AG 10570271 Downstream 5bp 25878 chr11 60699567 60699567 1 + G A LUSC 60699568 + 60699548 60699588 41 GGAGGTGACAGAGCATGTCGGCTGCGAGTCTGCCAACACAC GGAGGTGACAGAGCATGTCAGCTGCGAGTCTGCCAACACAC < 41bp 0.568017228723193 0.779242993256703 NA NA prediction 0.42245152906702 Functional Gain - TMEM132A ENSG00000006118 CDS Human protein_coding chr11:60699568 chr11:60699567 nonsynonymous SNV 0.933 4 20 hm7G_associated_SNPs_28418 0 0 1 0 1 TMEM132A chr11:60699599 5'GT 60699599 Upstream 33bp 25879 chr22 26317234 26317234 1 + G T UCEC 26317235 + 26317215 26317255 41 GGCTTTCAGATTGGCCATCGGGACTTTGATGTGGAGAAGCG GGCTTTCAGATTGGCCATCTGGACTTTGATGTGGAGAAGCG < 41bp 0.382317752954267 0.711225385054278 NA NA prediction 0.422450770108556 Functional Gain - MYO18B ENSG00000133454 CDS Human protein_coding chr22:26317235 chr22:26317234 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_28419 0 0 1 0 1 MYO18B chr22:26317224 3'AG 26317224 Downstream 11bp 25880 chr4 106879704 106879704 1 + G T UCEC 106879705 + 106879685 106879725 41 GTGCAGACGATGAAGCAAAGGATGATCCAGGTGACACTTAC GTGCAGACGATGAAGCAAATGATGATCCAGGTGACACTTAC < 41bp 0.384997543962163 0.711222744677839 NA NA prediction 0.422445489355678 Functional Gain - NPNT ENSG00000168743 CDS Human protein_coding chr4:106879705 chr4:106879704 nonsynonymous SNV 0.981 1 20 hm7G_associated_SNPs_28420 0 0 0 0 2 NPNT chr4:106879628 3'AG 106879628 Downstream 77bp 25881 chr4 106879704 106879704 1 + G T UCEC 106879705 + 106879685 106879725 41 GTGCAGACGATGAAGCAAAGGATGATCCAGGTGACACTTAC GTGCAGACGATGAAGCAAATGATGATCCAGGTGACACTTAC < 41bp 0.384997543962163 0.711222744677839 NA NA prediction 0.422445489355678 Functional Gain - NPNT ENSG00000168743 CDS Human protein_coding chr4:106879705 chr4:106879704 nonsynonymous SNV 0.981 1 20 hm7G_associated_SNPs_28420 0 0 0 0 2 NPNT chr4:106879714 5'GT 106879714 Upstream 11bp 25882 chr5 176295964 176295964 1 + C T COAD 176295965 + 176295945 176295985 41 CCGCTGCTGTCATCGTCTACGGTGGGCCCCGGGACTCCCTG CCGCTGCTGTCATCGTCTATGGTGGGCCCCGGGACTCCCTG < 41bp 0.515079183203609 0.726299472523795 NA NA prediction 0.422440578640372 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295965 chr5:176295964 synonymous SNV . 0 20 hm7G_associated_SNPs_28421 0 0 0 0 1 UNC5A chr5:176295965 5'GT 176295965 Upstream 2bp 25883 chr11 20625938 20625938 1 + G T LGG 20625939 + 20625919 20625959 41 GGGCTGGGCAATGTCTGGAGGTTTCCCTACCTGGCCTTCCA GGGCTGGGCAATGTCTGGATGTTTCCCTACCTGGCCTTCCA < 41bp 0.367330198987515 0.711214060006224 NA NA prediction 0.422428120012448 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20625939 chr11:20625938 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28425 0 0 0 0 1 SLC6A5 chr11:20625970 5'GT 20625970 Upstream 33bp 25884 chr18 47095827 47095827 1 + C T KIRC 47095828 + 47095808 47095848 41 AGAAGGACGATTTTTCTCTCGGGAATGTCCACTTGATCGGC AGAAGGACGATTTTTCTCTTGGGAATGTCCACTTGATCGGC < 41bp 0.504158896297102 0.715370283963159 NA NA prediction 0.422422775332113 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47095828 chr18:47095827 synonymous SNV . 0 20 hm7G_associated_SNPs_28426 0 0 0 0 2 LIPG chr18:47095807 3'AG 47095807 Downstream 21bp 25885 chr18 47095827 47095827 1 + C T KIRC 47095828 + 47095808 47095848 41 AGAAGGACGATTTTTCTCTCGGGAATGTCCACTTGATCGGC AGAAGGACGATTTTTCTCTTGGGAATGTCCACTTGATCGGC < 41bp 0.504158896297102 0.715370283963159 NA NA prediction 0.422422775332113 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47095828 chr18:47095827 synonymous SNV . 0 20 hm7G_associated_SNPs_28426 0 0 0 0 2 LIPG chr18:47095918 5'GT 47095918 Upstream 92bp 25886 chr16 15788066 15788066 1 + C T BLCA 15788067 + 15788047 15788087 41 CCCCCTCACACCTGCGGCCCGGATATCAGCCCTCAACATTG CCCCCTCACACCTGCGGCCTGGATATCAGCCCTCAACATTG < 41bp 0.499989927879633 0.711211114023537 NA NA prediction 0.422422228047074 Functional Gain - NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788067 chr16:15788066 nonsynonymous SNV 0.729 3 20 hm7G_associated_SNPs_28427 0 0 1 0 2 NDE1 chr16:15788022 3'AG 15788022 Downstream 45bp 25887 chr16 15788066 15788066 1 + C T BLCA 15788067 + 15788047 15788087 41 CCCCCTCACACCTGCGGCCCGGATATCAGCCCTCAACATTG CCCCCTCACACCTGCGGCCTGGATATCAGCCCTCAACATTG < 41bp 0.499989927879633 0.711211114023537 NA NA prediction 0.422422228047074 Functional Gain - NDE1 ENSG00000072864 CDS Human protein_coding chr16:15788067 chr16:15788066 nonsynonymous SNV 0.729 3 20 hm7G_associated_SNPs_28427 0 0 1 0 2 NDE1 chr16:15788113 5'GT 15788113 Upstream 48bp 25888 chr1 227149148 227149148 1 + C T HNSC 227149149 + 227149129 227149169 41 CTTGTCAAGCTGACCCAGGCGGCCGTGGAAACCCACCTGCA CTTGTCAAGCTGACCCAGGTGGCCGTGGAAACCCACCTGCA < 41bp 0.507211066065679 0.718422136420089 NA NA prediction 0.42242214070882 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227149149 chr1:227149148 nonsynonymous SNV 0.367 0 20 hm7G_associated_SNPs_28428 1 0 1 0 2 COQ8A chr1:227149078 3'AG 227149078 Downstream 71bp 25889 chr1 227149148 227149148 1 + C T HNSC 227149149 + 227149129 227149169 41 CTTGTCAAGCTGACCCAGGCGGCCGTGGAAACCCACCTGCA CTTGTCAAGCTGACCCAGGTGGCCGTGGAAACCCACCTGCA < 41bp 0.507211066065679 0.718422136420089 NA NA prediction 0.42242214070882 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227149149 chr1:227149148 nonsynonymous SNV 0.367 0 20 hm7G_associated_SNPs_28428 1 0 1 0 2 COQ8A chr1:227149127 3'AG 227149127 Downstream 22bp 25890 chr10 122665427 122665427 1 + C T COAD 122665428 + 122665408 122665448 41 GTGTGCCGATGTTTTAAGGCGGTGGGTTGACCACCTTTGTT GTGTGCCGATGTTTTAAGGTGGTGGGTTGACCACCTTTGTT < 41bp 0.497417187066895 0.711205527872469 NA NA prediction 0.422411055744939 Functional Gain - WDR11 ENSG00000120008 CDS Human protein_coding chr10:122665428 chr10:122665427 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_28432 0 0 1 0 1 WDR11 chr10:122665388 3'AG 122665388 Downstream 40bp 25891 chr19 2994072 2994072 1 + G A rs73514575 2994073 + 2994053 2994093 41 TTGGCGTCTACAGCATGCCGGCGGGGACAAAAGTGTTCGAG TTGGCGTCTACAGCATGCCAGCGGGGACAAAAGTGTTCGAG < 41bp 0.506047249978664 0.71724947433945 NA NA prediction 0.422404448721572 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994073 chr19:2994072 synonymous SNV 0.009 0 20 hm7G_associated_SNPs_28433 0 0 0 0 2 TLE6 chr19:2994017 3'AG 2994017 Downstream 56bp 25892 chr19 2994072 2994072 1 + G A rs73514575 2994073 + 2994053 2994093 41 TTGGCGTCTACAGCATGCCGGCGGGGACAAAAGTGTTCGAG TTGGCGTCTACAGCATGCCAGCGGGGACAAAAGTGTTCGAG < 41bp 0.506047249978664 0.71724947433945 NA NA prediction 0.422404448721572 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994073 chr19:2994072 synonymous SNV 0.009 0 20 hm7G_associated_SNPs_28433 0 0 0 0 2 TLE6 chr19:2994093 5'GT 2994093 Upstream 22bp 25893 chr9 100308524 100308524 1 + G A COAD 100308525 + 100308505 100308545 41 GACCACCAAGGCGCCCACGGGCCCCTTTAAAAGAGAGGAGC GACCACCAAGGCGCCCACGAGCCCCTTTAAAAGAGAGGAGC < 41bp 0.507799147089288 0.718999464354442 NA NA prediction 0.422400634530308 Functional Gain - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100308525 chr9:100308524 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_28434 0 0 1 0 2 TMOD1 chr9:100308467 3'AG 100308467 Downstream 58bp 25894 chr9 100308524 100308524 1 + G A COAD 100308525 + 100308505 100308545 41 GACCACCAAGGCGCCCACGGGCCCCTTTAAAAGAGAGGAGC GACCACCAAGGCGCCCACGAGCCCCTTTAAAAGAGAGGAGC < 41bp 0.507799147089288 0.718999464354442 NA NA prediction 0.422400634530308 Functional Gain - TMOD1 ENSG00000136842 CDS Human protein_coding chr9:100308525 chr9:100308524 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_28434 0 0 1 0 2 TMOD1 chr9:100308623 5'GT 100308623 Upstream 100bp 25895 chr2 60996008 60996008 1 + G T LUAD 60996009 + 60995989 60996029 41 AAAATTGAAACATCAAGATGGCATTAGAAACTTAAGAGTAA AAAATTGAAACATCAAGATTGCATTAGAAACTTAAGAGTAA < 41bp 0.401617063965501 0.711192890274271 NA NA prediction 0.422385780548542 Functional Gain - PAPOLG ENSG00000115421 CDS Human protein_coding chr2:60996009 chr2:60996008 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28436 0 0 1 0 1 PAPOLG chr2:60995916 3'AG 60995916 Downstream 93bp 25896 chr1 55144997 55144997 1 + G A SKCM 55144998 + 55144978 55145018 41 CTGCTGGCCGCCCTGGAAGGGCTGAAAGGCAGCTCAGAGGC CTGCTGGCCGCCCTGGAAGAGCTGAAAGGCAGCTCAGAGGC < 41bp 0.531325584434135 0.742517859908356 NA NA prediction 0.422384550948441 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55144998 chr1:55144997 nonsynonymous SNV 0.686 3 20 hm7G_associated_SNPs_28437 0 0 0 0 1 MROH7 chr1:55144936 3'AG 55144936 Downstream 62bp 25897 chr11 66258799 66258799 1 + G A UCEC 66258800 + 66258780 66258820 41 AGCCCTTTCCAGGTGACCCGGGGGGACTACGCGCCCATCCT AGCCCTTTCCAGGTGACCCAGGGGGACTACGCGCCCATCCT < 41bp 0.516869975215595 0.728062132221423 NA NA prediction 0.422384314011655 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258800 chr11:66258799 nonsynonymous SNV 0.846 3 20 hm7G_associated_SNPs_28438 0 0 0 0 2 DPP3 chr11:66258724 3'AG 66258724 Downstream 76bp 25898 chr11 66258799 66258799 1 + G A UCEC 66258800 + 66258780 66258820 41 AGCCCTTTCCAGGTGACCCGGGGGGACTACGCGCCCATCCT AGCCCTTTCCAGGTGACCCAGGGGGACTACGCGCCCATCCT < 41bp 0.516869975215595 0.728062132221423 NA NA prediction 0.422384314011655 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66258800 chr11:66258799 nonsynonymous SNV 0.846 3 20 hm7G_associated_SNPs_28438 0 0 0 0 2 DPP3 chr11:66258854 5'GT 66258854 Upstream 56bp 25899 chr12 110017677 110017677 1 + C T CESC 110017678 + 110017658 110017698 41 AGGTTGCAGGCTTGCCTGACGACTGTGCTGTCACCGAGCGC AGGTTGCAGGCTTGCCTGATGACTGTGCTGTCACCGAGCGC < 41bp 0.516110133833683 0.727297783884999 NA NA prediction 0.422375300102631 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110017678 chr12:110017677 synonymous SNV . 0 20 hm7G_associated_SNPs_28439 0 0 0 0 2 MVK chr12:110017607 3'AG 110017607 Downstream 71bp 25900 chr12 110017677 110017677 1 + C T CESC 110017678 + 110017658 110017698 41 AGGTTGCAGGCTTGCCTGACGACTGTGCTGTCACCGAGCGC AGGTTGCAGGCTTGCCTGATGACTGTGCTGTCACCGAGCGC < 41bp 0.516110133833683 0.727297783884999 NA NA prediction 0.422375300102631 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110017678 chr12:110017677 synonymous SNV . 0 20 hm7G_associated_SNPs_28439 0 0 0 0 2 MVK chr12:110017751 5'GT 110017751 Upstream 75bp 25901 chr2 162275493 162275493 1 + G A UCEC 162275494 + 162275474 162275514 41 GGAGGACACTAGCCAGCCCGGCCGCGTGCAGACGTTCACTT GGAGGACACTAGCCAGCCCAGCCGCGTGCAGACGTTCACTT < 41bp 0.552029251771026 0.763215543633515 NA NA prediction 0.422372583724978 Functional Gain - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162275494 chr2:162275493 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_28440 0 0 0 0 2 TBR1 chr2:162275403 3'AG 162275403 Downstream 91bp 25902 chr2 162275493 162275493 1 + G A UCEC 162275494 + 162275474 162275514 41 GGAGGACACTAGCCAGCCCGGCCGCGTGCAGACGTTCACTT GGAGGACACTAGCCAGCCCAGCCGCGTGCAGACGTTCACTT < 41bp 0.552029251771026 0.763215543633515 NA NA prediction 0.422372583724978 Functional Gain - TBR1 ENSG00000136535 CDS Human protein_coding chr2:162275494 chr2:162275493 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_28440 0 0 0 0 2 TBR1 chr2:162275561 5'GT 162275561 Upstream 69bp 25903 chr7 73106938 73106938 1 + C T LUSC 73106939 + 73106919 73106959 41 CTTTCAGGTCCGGGGATCCCGAGCTGTCCTGCAGCTGTACC CTTTCAGGTCCGGGGATCCTGAGCTGTCCTGCAGCTGTACC < 41bp 0.523383421987566 0.734569212175337 NA NA prediction 0.422371580375542 Functional Gain - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73106939 chr7:73106938 stopgain 0.833 1 20 hm7G_associated_SNPs_28441 0 0 1 0 2 BUD23 chr7:73106926 3'AG 73106926 Downstream 13bp 25904 chr7 73106938 73106938 1 + C T LUSC 73106939 + 73106919 73106959 41 CTTTCAGGTCCGGGGATCCCGAGCTGTCCTGCAGCTGTACC CTTTCAGGTCCGGGGATCCTGAGCTGTCCTGCAGCTGTACC < 41bp 0.523383421987566 0.734569212175337 NA NA prediction 0.422371580375542 Functional Gain - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73106939 chr7:73106938 stopgain 0.833 1 20 hm7G_associated_SNPs_28441 0 0 1 0 2 BUD23 chr7:73106976 5'GT 73106976 Upstream 39bp 25905 chr19 19606651 19606651 1 + C T COAD 19606652 + 19606632 19606672 41 TCGAAGCTGGGGCCACAGGCGAGCTCACAGGTCGTCATGCC TCGAAGCTGGGGCCACAGGTGAGCTCACAGGTCGTCATGCC < 41bp 0.499642258705104 0.711184712779334 NA NA prediction 0.422369425558669 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606652 chr19:19606651 nonsynonymous SNV 0.762 0 20 hm7G_associated_SNPs_28442 0 0 1 0 2 GATAD2A chr19:19606563 3'AG 19606563 Downstream 89bp 25906 chr19 19606651 19606651 1 + C T COAD 19606652 + 19606632 19606672 41 TCGAAGCTGGGGCCACAGGCGAGCTCACAGGTCGTCATGCC TCGAAGCTGGGGCCACAGGTGAGCTCACAGGTCGTCATGCC < 41bp 0.499642258705104 0.711184712779334 NA NA prediction 0.422369425558669 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19606652 chr19:19606651 nonsynonymous SNV 0.762 0 20 hm7G_associated_SNPs_28442 0 0 1 0 2 GATAD2A chr19:19606694 5'GT 19606694 Upstream 44bp 25907 chr2 219736491 219736491 1 + G A UCEC 219736492 + 219736472 219736512 41 GCGGCACAAGCGGGGACGCGGAGACATCCGCGCGTTGGTGC GCGGCACAAGCGGGGACGCAGAGACATCCGCGCGTTGGTGC < 41bp 0.514827581641845 0.726011644725773 NA NA prediction 0.422368126167856 Functional Gain - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219736492 chr2:219736491 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_28444 0 0 0 0 1 WNT6 chr2:219736541 5'GT 219736541 Upstream 51bp 25908 chr3 14941947 14941947 1 + C T UCEC 14941948 + 14941928 14941968 41 GTCCGGACTCCGCCGAGTACGACAACACACAGGGTGAGTCC GTCCGGACTCCGCCGAGTATGACAACACACAGGGTGAGTCC < 41bp 0.504872331464616 0.716051945333321 NA NA prediction 0.422359227737411 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14941948 chr3:14941947 synonymous SNV . 0 20 hm7G_associated_SNPs_28446 0 0 0 0 1 FGD5 chr3:14941910 3'AG 14941910 Downstream 38bp 25909 chr11 71189504 71189504 1 + C T SKCM 71189505 + 71189485 71189525 41 CAGGGCGGAGATTTCATCTCGAAACCTGGCGGTGAGTGCTC CAGGGCGGAGATTTCATCTTGAAACCTGGCGGTGAGTGCTC < 41bp 0.514594397468516 0.725773847753852 NA NA prediction 0.422358900570672 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71189505 chr11:71189504 stopgain 0.995 0 20 hm7G_associated_SNPs_28448 0 0 1 0 2 NADSYN1 chr11:71189441 3'AG 71189441 Downstream 64bp 25910 chr11 71189504 71189504 1 + C T SKCM 71189505 + 71189485 71189525 41 CAGGGCGGAGATTTCATCTCGAAACCTGGCGGTGAGTGCTC CAGGGCGGAGATTTCATCTTGAAACCTGGCGGTGAGTGCTC < 41bp 0.514594397468516 0.725773847753852 NA NA prediction 0.422358900570672 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71189505 chr11:71189504 stopgain 0.995 0 20 hm7G_associated_SNPs_28448 0 0 1 0 2 NADSYN1 chr11:71189515 5'GT 71189515 Upstream 12bp 25911 chr11 68696733 68696733 1 + C T SKCM 68696734 + 68696714 68696754 41 ACGAGTGTGCCCAGGCCCTCGAGGCGAGCTGCTGGATCCCC ACGAGTGTGCCCAGGCCCTTGAGGCGAGCTGCTGGATCCCC < 41bp 0.517610227405413 0.728786864898445 NA NA prediction 0.422353274986066 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68696734 chr11:68696733 synonymous SNV . 0 20 hm7G_associated_SNPs_28449 0 0 1 0 2 IGHMBP2 chr11:68696651 3'AG 68696651 Downstream 83bp 25912 chr11 68696733 68696733 1 + C T SKCM 68696734 + 68696714 68696754 41 ACGAGTGTGCCCAGGCCCTCGAGGCGAGCTGCTGGATCCCC ACGAGTGTGCCCAGGCCCTTGAGGCGAGCTGCTGGATCCCC < 41bp 0.517610227405413 0.728786864898445 NA NA prediction 0.422353274986066 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68696734 chr11:68696733 synonymous SNV . 0 20 hm7G_associated_SNPs_28449 0 0 1 0 2 IGHMBP2 chr11:68696825 5'GT 68696825 Upstream 93bp 25913 chr7 100187923 100187923 1 + C T GBM 100187924 + 100187904 100187944 41 CTGTCGCAGACTCAGTCCGCGCCTCCAAGATCAGGGTTCTG CTGTCGCAGACTCAGTCCGTGCCTCCAAGATCAGGGTTCTG < 41bp 0.505177978250076 0.716349928176503 NA NA prediction 0.422343899852853 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187924 chr7:100187923 nonsynonymous SNV 0.678 2 20 hm7G_associated_SNPs_28450 0 0 0 1 1 FBXO24 chr7:100187980 5'GT 100187980 Upstream 58bp 25914 chr17 73554254 73554254 1 + G A SKCM 73554255 + 73554235 73554275 41 GCTACGGAGCCCCAGGCGTGGAGTTCATGGGGCTGCACCAG GCTACGGAGCCCCAGGCGTAGAGTTCATGGGGCTGCACCAG < 41bp 0.533222065662146 0.74438874763835 NA NA prediction 0.422333363952409 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73554255 chr17:73554254 synonymous SNV . 0 20 hm7G_associated_SNPs_28451 0 0 1 0 2 LLGL2 chr17:73554236 3'AG 73554236 Downstream 19bp 25915 chr17 73554254 73554254 1 + G A SKCM 73554255 + 73554235 73554275 41 GCTACGGAGCCCCAGGCGTGGAGTTCATGGGGCTGCACCAG GCTACGGAGCCCCAGGCGTAGAGTTCATGGGGCTGCACCAG < 41bp 0.533222065662146 0.74438874763835 NA NA prediction 0.422333363952409 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73554255 chr17:73554254 synonymous SNV . 0 20 hm7G_associated_SNPs_28451 0 0 1 0 2 LLGL2 chr17:73554317 5'GT 73554317 Upstream 64bp 25916 chr7 56062651 56062651 1 + G T STAD 56062652 + 56062632 56062672 41 AGGATTCTTCTCTCAGATTGGGCAGCTGTACATGGTGCACC AGGATTCTTCTCTCAGATTTGGCAGCTGTACATGGTGCACC < 41bp 0.693716432726285 0.904878143160346 NA NA prediction 0.422323420868122 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56062652 chr7:56062651 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_28453 0 0 1 0 2 NIPSNAP2 chr7:56062587 3'AG 56062587 Downstream 65bp 25917 chr7 56062651 56062651 1 + G T STAD 56062652 + 56062632 56062672 41 AGGATTCTTCTCTCAGATTGGGCAGCTGTACATGGTGCACC AGGATTCTTCTCTCAGATTTGGCAGCTGTACATGGTGCACC < 41bp 0.693716432726285 0.904878143160346 NA NA prediction 0.422323420868122 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56062652 chr7:56062651 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_28453 0 0 1 0 2 NIPSNAP2 chr7:56062681 5'GT 56062681 Upstream 31bp 25918 chr16 57790311 57790311 1 + C T LGG 57790312 + 57790292 57790332 41 CCTGAAGCTGATCCTGCAGCGGTTTCTGCCCCTCATCACAG CCTGAAGCTGATCCTGCAGTGGTTTCTGCCCCTCATCACAG < 41bp 0.498133779916748 0.711161462206026 NA NA prediction 0.422322924412051 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57790312 chr16:57790311 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28454 0 0 1 0 2 KATNB1 chr16:57790268 3'AG 57790268 Downstream 44bp 25919 chr16 57790311 57790311 1 + C T LGG 57790312 + 57790292 57790332 41 CCTGAAGCTGATCCTGCAGCGGTTTCTGCCCCTCATCACAG CCTGAAGCTGATCCTGCAGTGGTTTCTGCCCCTCATCACAG < 41bp 0.498133779916748 0.711161462206026 NA NA prediction 0.422322924412051 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57790312 chr16:57790311 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28454 0 0 1 0 2 KATNB1 chr16:57790384 5'GT 57790384 Upstream 74bp 25920 chr4 1369243 1369243 1 + G A STAD 1369244 + 1369224 1369264 41 TGTCGGACCCCACCTCTGCGGCTGCTCAGCTGCGGCAGCTC TGTCGGACCCCACCTCTGCAGCTGCTCAGCTGCGGCAGCTC < 41bp 0.478926355179439 0.711160276313515 NA NA prediction 0.42232055262703 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1369244 chr4:1369243 synonymous SNV . 0 20 hm7G_associated_SNPs_28456 0 0 1 0 2 UVSSA chr4:1369152 3'AG 1369152 Downstream 92bp 25921 chr4 1369243 1369243 1 + G A STAD 1369244 + 1369224 1369264 41 TGTCGGACCCCACCTCTGCGGCTGCTCAGCTGCGGCAGCTC TGTCGGACCCCACCTCTGCAGCTGCTCAGCTGCGGCAGCTC < 41bp 0.478926355179439 0.711160276313515 NA NA prediction 0.42232055262703 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1369244 chr4:1369243 synonymous SNV . 0 20 hm7G_associated_SNPs_28456 0 0 1 0 2 UVSSA chr4:1369296 5'GT 1369296 Upstream 54bp 25922 chr15 39879605 39879605 1 + C T BLCA 39879606 + 39879586 39879626 41 GAGTGGACCTCCTGTTCTACGAGCTGTGGCAATGGAATTCA GAGTGGACCTCCTGTTCTATGAGCTGTGGCAATGGAATTCA < 41bp 0.500047678317076 0.711205317149724 NA NA prediction 0.422315277665297 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39879606 chr15:39879605 nonsynonymous SNV 0.291 1 20 hm7G_associated_SNPs_28457 0 0 1 0 1 THBS1 chr15:39879548 3'AG 39879548 Downstream 58bp 25923 chr9 137021706 137021706 1 + G T UCEC 137021707 + 137021687 137021727 41 GATTGTACAGAAACTACAAGGCCACACAGGTGAGGGCCTGC GATTGTACAGAAACTACAATGCCACACAGGTGAGGGCCTGC < 41bp 0.701134759917394 0.912284642801989 NA NA prediction 0.422299765769189 Functional Gain - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021707 chr9:137021706 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_28459 0 0 1 0 2 WDR5 chr9:137021628 3'AG 137021628 Downstream 79bp 25924 chr9 137021706 137021706 1 + G T UCEC 137021707 + 137021687 137021727 41 GATTGTACAGAAACTACAAGGCCACACAGGTGAGGGCCTGC GATTGTACAGAAACTACAATGCCACACAGGTGAGGGCCTGC < 41bp 0.701134759917394 0.912284642801989 NA NA prediction 0.422299765769189 Functional Gain - WDR5 ENSG00000196363 CDS Human protein_coding chr9:137021707 chr9:137021706 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_28459 0 0 1 0 2 WDR5 chr9:137021715 5'GT 137021715 Upstream 10bp 25925 chr15 80883951 80883951 1 + C T BLCA 80883952 + 80883932 80883972 41 CAGTTCCAAGGGCGGCCCTCGGAAGTCTGGTCGCAGTGGCA CAGTTCCAAGGGCGGCCCTTGGAAGTCTGGTCGCAGTGGCA < 41bp 0.523225518213588 0.734364390205804 NA NA prediction 0.422277743984432 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80883952 chr15:80883951 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_28462 0 0 0 0 2 ARNT2 chr15:80883909 3'AG 80883909 Downstream 43bp 25926 chr15 80883951 80883951 1 + C T BLCA 80883952 + 80883932 80883972 41 CAGTTCCAAGGGCGGCCCTCGGAAGTCTGGTCGCAGTGGCA CAGTTCCAAGGGCGGCCCTTGGAAGTCTGGTCGCAGTGGCA < 41bp 0.523225518213588 0.734364390205804 NA NA prediction 0.422277743984432 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80883952 chr15:80883951 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_28462 0 0 0 0 2 ARNT2 chr15:80884045 5'GT 80884045 Upstream 95bp 25927 chr16 84456270 84456270 1 + C T SKCM 84456271 + 84456251 84456291 41 CAGGGGAAAGCTCTCAGTTCGGAGAAGTGTTTAAGATGATG CAGGGGAAAGCTCTCAGTTTGGAGAAGTGTTTAAGATGATG < 41bp 0.494243604211373 0.711138117389629 NA NA prediction 0.422276234779258 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84456271 chr16:84456270 synonymous SNV . 0 20 hm7G_associated_SNPs_28463 0 0 0 0 2 ATP2C2 chr16:84456235 3'AG 84456235 Downstream 36bp 25928 chr16 84456270 84456270 1 + C T SKCM 84456271 + 84456251 84456291 41 CAGGGGAAAGCTCTCAGTTCGGAGAAGTGTTTAAGATGATG CAGGGGAAAGCTCTCAGTTTGGAGAAGTGTTTAAGATGATG < 41bp 0.494243604211373 0.711138117389629 NA NA prediction 0.422276234779258 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84456271 chr16:84456270 synonymous SNV . 0 20 hm7G_associated_SNPs_28463 0 0 0 0 2 ATP2C2 chr16:84456303 5'GT 84456303 Upstream 34bp 25929 chr2 182346351 182346351 1 + C T SARC 182346352 + 182346332 182346372 41 AGTCGGAGCTGGTCATTTTCGGAGCCAGCATACTACCGAAG AGTCGGAGCTGGTCATTTTTGGAGCCAGCATACTACCGAAG < 41bp 0.519981886574281 0.731119804403892 NA NA prediction 0.422275835659222 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182346352 chr2:182346351 nonsynonymous SNV 0.827 0 20 hm7G_associated_SNPs_28464 0 0 1 0 2 ITGA4 chr2:182346325 3'AG 182346325 Downstream 27bp 25930 chr2 182346351 182346351 1 + C T SARC 182346352 + 182346332 182346372 41 AGTCGGAGCTGGTCATTTTCGGAGCCAGCATACTACCGAAG AGTCGGAGCTGGTCATTTTTGGAGCCAGCATACTACCGAAG < 41bp 0.519981886574281 0.731119804403892 NA NA prediction 0.422275835659222 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182346352 chr2:182346351 nonsynonymous SNV 0.827 0 20 hm7G_associated_SNPs_28464 0 0 1 0 2 ITGA4 chr2:182346410 5'GT 182346410 Upstream 60bp 25931 chr18 44584698 44584698 1 + C T ESCA 44584699 + 44584679 44584719 41 AAGACAGGGGACACCAAATCGCTCAATAAGGAGCATCCTAA AAGACAGGGGACACCAAATTGCTCAATAAGGAGCATCCTAA < 41bp 0.513751614189471 0.724887781759016 NA NA prediction 0.422272335139089 Functional Gain - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44584699 chr18:44584698 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_28465 0 0 0 0 2 KATNAL2 chr18:44584606 3'AG 44584606 Downstream 93bp 25932 chr18 44584698 44584698 1 + C T ESCA 44584699 + 44584679 44584719 41 AAGACAGGGGACACCAAATCGCTCAATAAGGAGCATCCTAA AAGACAGGGGACACCAAATTGCTCAATAAGGAGCATCCTAA < 41bp 0.513751614189471 0.724887781759016 NA NA prediction 0.422272335139089 Functional Gain - KATNAL2 ENSG00000167216 CDS Human protein_coding chr18:44584699 chr18:44584698 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_28465 0 0 0 0 2 KATNAL2 chr18:44584723 5'GT 44584723 Upstream 26bp 25933 chr17 76060933 76060933 1 + C T UCEC 76060934 + 76060914 76060954 41 AGCCACCCAGCAGTGGCAGCGGGTGGGGAGATCACCCTGCA AGCCACCCAGCAGTGGCAGTGGGTGGGGAGATCACCCTGCA < 41bp 0.517362215856245 0.72849828794101 NA NA prediction 0.422272144169529 Functional Gain - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76060934 chr17:76060933 synonymous SNV . 0 20 hm7G_associated_SNPs_28466 0 0 1 0 1 TNRC6C chr17:76061018 5'GT 76061018 Upstream 86bp 25934 chr4 166978380 166978380 1 + C T CESC 166978381 + 166978361 166978401 41 CCGTGGAGGCTGTGAGCAGCGATGTCTGAACACTCTGGGCA CCGTGGAGGCTGTGAGCAGTGATGTCTGAACACTCTGGGCA < 41bp 0.496823286416145 0.71113176564469 NA NA prediction 0.42226353128938 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166978381 chr4:166978380 stopgain 0.071 0 20 hm7G_associated_SNPs_28469 0 0 0 0 2 TLL1 chr4:166978336 3'AG 166978336 Downstream 45bp 25935 chr4 166978380 166978380 1 + C T CESC 166978381 + 166978361 166978401 41 CCGTGGAGGCTGTGAGCAGCGATGTCTGAACACTCTGGGCA CCGTGGAGGCTGTGAGCAGTGATGTCTGAACACTCTGGGCA < 41bp 0.496823286416145 0.71113176564469 NA NA prediction 0.42226353128938 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166978381 chr4:166978380 stopgain 0.071 0 20 hm7G_associated_SNPs_28469 0 0 0 0 2 TLL1 chr4:166978461 5'GT 166978461 Upstream 82bp 25936 chr3 119533863 119533863 1 + G A SKCM 119533864 + 119533844 119533884 41 CCAGATCTCCCTGCTGAAGGGGGCCGCTTTCGAGCTGTGTC CCAGATCTCCCTGCTGAAGAGGGCCGCTTTCGAGCTGTGTC < 41bp 0.50142229470895 0.712553368347058 NA NA prediction 0.422262147276215 Functional Gain - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119533864 chr3:119533863 nonsynonymous SNV 0.872 5 20 hm7G_associated_SNPs_28470 0 0 1 0 1 NR1I2 chr3:119533826 3'AG 119533826 Downstream 38bp 25937 chr9 82336771 82336771 1 + C T STAD 82336772 + 82336752 82336792 41 CTGGGACCTGCGCGAGGGGCGGCAGCTGCAGCAGCACGACT CTGGGACCTGCGCGAGGGGTGGCAGCTGCAGCAGCACGACT < 41bp 0.527755565477153 0.738882500548074 NA NA prediction 0.422253870141843 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82336772 chr9:82336771 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_28471 0 0 0 0 1 TLE4 chr9:82336803 5'GT 82336803 Upstream 33bp 25938 chr20 39793914 39793914 1 + C T LGG 39793915 + 39793895 39793935 41 TGGCTGAGGGCAGTGCCTACGAGGAGGTGCCTACATCCATG TGGCTGAGGGCAGTGCCTATGAGGAGGTGCCTACATCCATG < 41bp 0.513527495867918 0.724646296096014 NA NA prediction 0.422237600456192 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39793915 chr20:39793914 synonymous SNV . 0 20 hm7G_associated_SNPs_28473 0 0 1 0 2 PLCG1 chr20:39793885 3'AG 39793885 Downstream 30bp 25939 chr20 39793914 39793914 1 + C T LGG 39793915 + 39793895 39793935 41 TGGCTGAGGGCAGTGCCTACGAGGAGGTGCCTACATCCATG TGGCTGAGGGCAGTGCCTATGAGGAGGTGCCTACATCCATG < 41bp 0.513527495867918 0.724646296096014 NA NA prediction 0.422237600456192 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39793915 chr20:39793914 synonymous SNV . 0 20 hm7G_associated_SNPs_28473 0 0 1 0 2 PLCG1 chr20:39794007 5'GT 39794007 Upstream 94bp 25940 chr19 7570315 7570315 1 + G A SKCM 7570316 + 7570296 7570336 41 CCGAGCACTTCTATGCCAGGGAGCCAGGTGAGAGCCTGAGG CCGAGCACTTCTATGCCAGAGAGCCAGGTGAGAGCCTGAGG < 41bp 0.492350631418093 0.711117806284789 NA NA prediction 0.422235612569577 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7570316 chr19:7570315 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28474 0 0 0 0 1 TEX45 chr19:7570322 5'GT 7570322 Upstream 8bp 25941 chr16 87677915 87677915 1 + G A BLCA 87677916 + 87677896 87677936 41 CGCCAGGGCTACGGCGTCCGGCAGAGCGTCCCGTATGGCAT CGCCAGGGCTACGGCGTCCAGCAGAGCGTCCCGTATGGCAT < 41bp 0.484006456393507 0.71111477223402 NA NA prediction 0.42222954446804 Functional Gain - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87677916 chr16:87677915 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28475 0 0 0 0 1 JPH3 chr16:87677864 3'AG 87677864 Downstream 52bp 25942 chr11 65000799 65000799 1 + G A rs148935166 65000800 + 65000780 65000820 41 CTCCTTCCTCATCCTGGCCGGGCTCATGGTGATCGCCAACA CTCCTTCCTCATCCTGGCCAGGCTCATGGTGATCGCCAACA < 41bp 0.520715181357071 0.731824752312449 NA NA prediction 0.422219141910754 Functional Gain - SLC22A20;POLA2 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:65000800 chr11:65000799 . . 0 20 hm7G_associated_SNPs_28478 0 0 0 0 1 SLC22A20;POLA2 chr11:65000835 5'GT 65000835 Upstream 37bp 25943 chr1 3390083 3390083 1 + G A SKCM 3390084 + 3390064 3390104 41 CCCGGCTGCCCCTCCTGATGGATGTAAGTCCACGGCCTGAG CCCGGCTGCCCCTCCTGATAGATGTAAGTCCACGGCCTGAG < 41bp 0.522551364390364 0.73366067420001 NA NA prediction 0.422218619619291 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3390084 chr1:3390083 nonsynonymous SNV 0.105 0 20 hm7G_associated_SNPs_28480 0 0 1 0 1 ARHGEF16 chr1:3390086 5'GT 3390086 Upstream 4bp 25944 chr16 22144329 22144329 1 + C T COAD 22144330 + 22144310 22144350 41 GGACACCACACCCCCTGCCCGCTATGCCAGTCACACTGACA GGACACCACACCCCCTGCCTGCTATGCCAGTCACACTGACA < 41bp 0.515792568328499 0.726900993824675 NA NA prediction 0.422216850992351 Functional Gain - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22144330 chr16:22144329 nonsynonymous SNV 0.986 0 20 hm7G_associated_SNPs_28481 0 0 0 1 1 VWA3A chr16:22144416 5'GT 22144416 Upstream 88bp 25945 chr3 38044780 38044780 1 + G A LUAD 38044781 + 38044761 38044801 41 TGGGAGGCCCTGGGAGGCCGGGCCCCCTACCCCAGCAACAA TGGGAGGCCCTGGGAGGCCAGGCCCCCTACCCCAGCAACAA < 41bp 0.48366799950471 0.711108316913162 NA NA prediction 0.422216633826324 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38044781 chr3:38044780 nonsynonymous SNV 0.673 0 20 hm7G_associated_SNPs_28482 0 0 0 0 1 VILL chr3:38044804 5'GT 38044804 Upstream 25bp 25946 chr5 43675646 43675646 1 + G T LUSC 43675647 + 43675627 43675667 41 CCTGGCTAATGTGATTCTTGGAGGCTATGGCACCACTTCAA CCTGGCTAATGTGATTCTTTGAGGCTATGGCACCACTTCAA < 41bp 0.370753774778756 0.711105966852361 NA NA prediction 0.422211933704722 Functional Gain - NNT ENSG00000112992 CDS Human protein_coding chr5:43675647 chr5:43675646 stopgain 1.000 1 20 hm7G_associated_SNPs_28483 0 0 1 0 1 NNT chr5:43675613 3'AG 43675613 Downstream 34bp 25947 chr6 44198148 44198148 1 + G A LUSC 44198149 + 44198129 44198169 41 TTCTGCCTGCCAGCTACACGGCCCCCATCATGAGTGGCCAG TTCTGCCTGCCAGCTACACAGCCCCCATCATGAGTGGCCAG < 41bp 0.536395474297531 0.747498601097606 NA NA prediction 0.42220625360015 Functional Gain - SLC29A1 ENSG00000112759 CDS Human protein_coding chr6:44198149 chr6:44198148 synonymous SNV . 0 20 hm7G_associated_SNPs_28485 0 0 1 1 1 SLC29A1 chr6:44198084 3'AG 44198084 Downstream 65bp 25948 chr1 200868692 200868692 1 + G A SKCM 200868693 + 200868673 200868713 41 CGAGGCTGGAGGCCTGCCTGGAGGAGCTGAGGAGACTCTGC CGAGGCTGGAGGCCTGCCTAGAGGAGCTGAGGAGACTCTGC < 41bp 0.530583528998635 0.741683495538896 NA NA prediction 0.422199933080522 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200868693 chr1:200868692 synonymous SNV . 0 20 hm7G_associated_SNPs_28486 0 0 1 0 2 C1orf106 chr1:200868601 3'AG 200868601 Downstream 92bp 25949 chr1 200868692 200868692 1 + G A SKCM 200868693 + 200868673 200868713 41 CGAGGCTGGAGGCCTGCCTGGAGGAGCTGAGGAGACTCTGC CGAGGCTGGAGGCCTGCCTAGAGGAGCTGAGGAGACTCTGC < 41bp 0.530583528998635 0.741683495538896 NA NA prediction 0.422199933080522 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200868693 chr1:200868692 synonymous SNV . 0 20 hm7G_associated_SNPs_28486 0 0 1 0 2 C1orf106 chr1:200868725 5'GT 200868725 Upstream 34bp 25950 chr17 55068496 55068496 1 + G A BLCA 55068497 + 55068477 55068517 41 CATCAAGTGCAACTTTGCGGGGGTTGCCTTGGGTGATTCCT CATCAAGTGCAACTTTGCGAGGGTTGCCTTGGGTGATTCCT < 41bp 0.501441028433883 0.712536997799435 NA NA prediction 0.422191938731104 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55068497 chr17:55068496 nonsynonymous SNV 0.679 5 20 hm7G_associated_SNPs_28487 0 0 1 0 2 SCPEP1 chr17:55068460 3'AG 55068460 Downstream 37bp 25951 chr17 55068496 55068496 1 + G A BLCA 55068497 + 55068477 55068517 41 CATCAAGTGCAACTTTGCGGGGGTTGCCTTGGGTGATTCCT CATCAAGTGCAACTTTGCGAGGGTTGCCTTGGGTGATTCCT < 41bp 0.501441028433883 0.712536997799435 NA NA prediction 0.422191938731104 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55068497 chr17:55068496 nonsynonymous SNV 0.679 5 20 hm7G_associated_SNPs_28487 0 0 1 0 2 SCPEP1 chr17:55068532 5'GT 55068532 Upstream 37bp 25952 chr18 44015303 44015303 1 + C T SKCM 44015304 + 44015284 44015324 41 ACCGCCTCCATCCCAGCTTCGACTTCGGCCAACTGCAGACA ACCGCCTCCATCCCAGCTTTGACTTCGGCCAACTGCAGACA < 41bp 0.501991491028619 0.71308507128256 NA NA prediction 0.422187160507881 Functional Gain - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44015304 chr18:44015303 synonymous SNV . 0 20 hm7G_associated_SNPs_28488 0 0 0 0 2 RNF165 chr18:44015252 3'AG 44015252 Downstream 52bp 25953 chr18 44015303 44015303 1 + C T SKCM 44015304 + 44015284 44015324 41 ACCGCCTCCATCCCAGCTTCGACTTCGGCCAACTGCAGACA ACCGCCTCCATCCCAGCTTTGACTTCGGCCAACTGCAGACA < 41bp 0.501991491028619 0.71308507128256 NA NA prediction 0.422187160507881 Functional Gain - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44015304 chr18:44015303 synonymous SNV . 0 20 hm7G_associated_SNPs_28488 0 0 0 0 2 RNF165 chr18:44015359 5'GT 44015359 Upstream 57bp 25954 chr7 138223420 138223420 1 + C T COAD 138223421 + 138223401 138223441 41 GAGCCTTGCAAAGGACCATCGCATGAAACTTATGCAACAAC GAGCCTTGCAAAGGACCATTGCATGAAACTTATGCAACAAC < 41bp 0.499318351608565 0.711093354964012 NA NA prediction 0.422186709928025 Functional Gain - TRIM24 ENSG00000122779 CDS Human protein_coding chr7:138223421 chr7:138223420 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28489 0 0 1 0 1 TRIM24 chr7:138223402 3'AG 138223402 Downstream 19bp 25955 chr2 29247232 29247232 1 + G A COAD 29247233 + 29247213 29247253 41 TGGTGGTCCTCACCTCGGCGGGTGTCTAGTATGTGGCTGCC TGGTGGTCCTCACCTCGGCAGGTGTCTAGTATGTGGCTGCC < 41bp 0.490357562508777 0.711090777734542 NA NA prediction 0.422181555469084 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29247233 chr2:29247232 synonymous SNV . 0 20 hm7G_associated_SNPs_28490 0 0 0 0 1 TOGARAM2 chr2:29247240 5'GT 29247240 Upstream 9bp 25956 chr13 25265131 25265131 1 + G A LGG 25265132 + 25265112 25265152 41 CCCTGTAGGCACTGTCACCGGCATGGTTATCAACACGGGTG CCCTGTAGGCACTGTCACCAGCATGGTTATCAACACGGGTG < 41bp 0.535342904848061 0.746430595058137 NA NA prediction 0.422175380420152 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25265132 chr13:25265131 nonsynonymous SNV 0.880 4 20 hm7G_associated_SNPs_28491 0 0 0 0 2 ATP12A chr13:25265102 3'AG 25265102 Downstream 30bp 25957 chr13 25265131 25265131 1 + G A LGG 25265132 + 25265112 25265152 41 CCCTGTAGGCACTGTCACCGGCATGGTTATCAACACGGGTG CCCTGTAGGCACTGTCACCAGCATGGTTATCAACACGGGTG < 41bp 0.535342904848061 0.746430595058137 NA NA prediction 0.422175380420152 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25265132 chr13:25265131 nonsynonymous SNV 0.880 4 20 hm7G_associated_SNPs_28491 0 0 0 0 2 ATP12A chr13:25265120 3'AG 25265120 Downstream 12bp 25958 chr11 67254625 67254625 1 + G A SKCM 67254626 + 67254606 67254646 41 GTGTGCACCATGCGAGAAGGGGAGATTGCCCAGTTCCTCTG GTGTGCACCATGCGAGAAGAGGAGATTGCCCAGTTCCTCTG < 41bp 0.533349603255592 0.744435531644957 NA NA prediction 0.42217185677873 Functional Gain - AIP ENSG00000110711 CDS Human protein_coding chr11:67254626 chr11:67254625 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_28492 0 0 1 0 1 AIP chr11:67254656 5'GT 67254656 Upstream 32bp 25959 chr6 41303865 41303865 1 + G A HNSC 41303866 + 41303846 41303886 41 CTCAGGTACTTCAAAGTGTGGCAGGGCAGACGCTAACCGTG CTCAGGTACTTCAAAGTGTAGCAGGGCAGACGCTAACCGTG < 41bp 0.551325183380057 0.762410639868618 NA NA prediction 0.422170912977122 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41303866 chr6:41303865 synonymous SNV . 0 20 hm7G_associated_SNPs_28493 0 0 0 0 1 NCR2 chr6:41303825 3'AG 41303825 Downstream 41bp 25960 chr17 4712641 4712641 1 + C T COAD 4712642 + 4712622 4712662 41 CTTGACCATGTCTTTCTATCGCAACTACCATGCCATGGTAA CTTGACCATGTCTTTCTATTGCAACTACCATGCCATGGTAA < 41bp 0.522356131016402 0.733440476856571 NA NA prediction 0.422168691680336 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712642 chr17:4712641 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_28494 0 0 1 0 2 PLD2 chr17:4712593 3'AG 4712593 Downstream 49bp 25961 chr17 4712641 4712641 1 + C T COAD 4712642 + 4712622 4712662 41 CTTGACCATGTCTTTCTATCGCAACTACCATGCCATGGTAA CTTGACCATGTCTTTCTATTGCAACTACCATGCCATGGTAA < 41bp 0.522356131016402 0.733440476856571 NA NA prediction 0.422168691680336 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712642 chr17:4712641 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_28494 0 0 1 0 2 PLD2 chr17:4712658 5'GT 4712658 Upstream 18bp 25962 chrX 57337083 57337083 1 + G T HNSC 57337084 + 57337064 57337104 41 AAAAGCTTGCAGAGAAGCAGGAAGATGAAGCCACCCTGGAA AAAAGCTTGCAGAGAAGCATGAAGATGAAGCCACCCTGGAA < 41bp 0.69195013020676 0.903033913498148 NA NA prediction 0.422167566582775 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57337084 chrX:57337083 nonsynonymous SNV 0.971 0 20 hm7G_associated_SNPs_28495 0 0 0 0 2 FAAH2 chrX:57337026 3'AG 57337026 Downstream 58bp 25963 chrX 57337083 57337083 1 + G T HNSC 57337084 + 57337064 57337104 41 AAAAGCTTGCAGAGAAGCAGGAAGATGAAGCCACCCTGGAA AAAAGCTTGCAGAGAAGCATGAAGATGAAGCCACCCTGGAA < 41bp 0.69195013020676 0.903033913498148 NA NA prediction 0.422167566582775 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57337084 chrX:57337083 nonsynonymous SNV 0.971 0 20 hm7G_associated_SNPs_28495 0 0 0 0 2 FAAH2 chrX:57337162 5'GT 57337162 Upstream 80bp 25964 chr22 40800432 40800432 1 + C T HNSC 40800433 + 40800413 40800453 41 TCCGCTCCCTGGTGCTGGCCGGCATCCCACATGGCATGAGG TCCGCTCCCTGGTGCTGGCTGGCATCCCACATGGCATGAGG < 41bp 0.508399050124617 0.719476685128479 NA NA prediction 0.422155270007724 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40800433 chr22:40800432 synonymous SNV . 0 20 hm7G_associated_SNPs_28496 0 0 1 0 1 SGSM3 chr22:40800459 5'GT 40800459 Upstream 28bp 25965 chrX 69637775 69637775 1 + G T STAD 69637776 + 69637756 69637796 41 TGTGGAAACAAGCAGTGTGGGTGCAGGAAGCAAAAGTCAGA TGTGGAAACAAGCAGTGTGTGTGCAGGAAGCAAAAGTCAGA < 41bp 0.388387505611148 0.711076610244651 NA NA prediction 0.422153220489302 Functional Gain - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69637776 chrX:69637775 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28497 0 0 0 0 1 KIF4A chrX:69637854 5'GT 69637854 Upstream 80bp 25966 chr11 193724 193724 1 + G A SKCM 193725 + 193705 193745 41 GATGCAGGGATGGCCACAGGGGAGGACAACGATGAGTTTTT GATGCAGGGATGGCCACAGAGGAGGACAACGATGAGTTTTT < 41bp 0.492109862760144 0.711075299841903 NA NA prediction 0.422150599683806 Functional Gain - SCGB1C1;SCGB1C2 ENSG00000188076 CDS Human protein_coding chr11:193725 chr11:193724 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28499 0 0 0 0 1 SCGB1C1;SCGB1C2 chr11:193712 3'AG 193712 Downstream 13bp 25967 chr12 112229927 112229927 1 + G T READ 112229928 + 112229908 112229948 41 AGAGAGTGACCTTGGAGCTGGGGGGGAAGAGCCCCAACATC AGAGAGTGACCTTGGAGCTTGGGGGGAAGAGCCCCAACATC < 41bp 0.698265838772192 0.909334131077445 NA NA prediction 0.422136584610507 Functional Gain - ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112229928 chr12:112229927 synonymous SNV . 0 20 hm7G_associated_SNPs_28503 0 0 1 0 2 ALDH2 chr12:112229865 3'AG 112229865 Downstream 63bp 25968 chr12 112229927 112229927 1 + G T READ 112229928 + 112229908 112229948 41 AGAGAGTGACCTTGGAGCTGGGGGGGAAGAGCCCCAACATC AGAGAGTGACCTTGGAGCTTGGGGGGAAGAGCCCCAACATC < 41bp 0.698265838772192 0.909334131077445 NA NA prediction 0.422136584610507 Functional Gain - ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112229928 chr12:112229927 synonymous SNV . 0 20 hm7G_associated_SNPs_28503 0 0 1 0 2 ALDH2 chr12:112229967 5'GT 112229967 Upstream 41bp 25969 chr9 35800750 35800750 1 + G A LUSC 35800751 + 35800731 35800771 41 AGAAGCAGATTTGGTGGACGGGACGGCCTATTCCCTGGGTG AGAAGCAGATTTGGTGGACAGGACGGCCTATTCCCTGGGTG < 41bp 0.489051225748174 0.711065605550369 NA NA prediction 0.422131211100738 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35800751 chr9:35800750 synonymous SNV . 0 20 hm7G_associated_SNPs_28505 0 0 0 0 2 NPR2 chr9:35800706 3'AG 35800706 Downstream 45bp 25970 chr9 35800750 35800750 1 + G A LUSC 35800751 + 35800731 35800771 41 AGAAGCAGATTTGGTGGACGGGACGGCCTATTCCCTGGGTG AGAAGCAGATTTGGTGGACAGGACGGCCTATTCCCTGGGTG < 41bp 0.489051225748174 0.711065605550369 NA NA prediction 0.422131211100738 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35800751 chr9:35800750 synonymous SNV . 0 20 hm7G_associated_SNPs_28505 0 0 0 0 2 NPR2 chr9:35800838 5'GT 35800838 Upstream 89bp 25971 chr22 25264381 25264381 1 + G A CESC 25264382 + 25264362 25264402 41 GGTATTGGTCAGCCAGGACGGGATCCAGAGGCCGCCCTTCC GGTATTGGTCAGCCAGGACAGGATCCAGAGGCCGCCCTTCC < 41bp 0.517581407652626 0.728646413887197 NA NA prediction 0.422130012469143 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264382 chr22:25264381 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28506 0 0 0 0 1 SGSM1 chr22:25264343 3'AG 25264343 Downstream 39bp 25972 chr17 4648003 4648003 1 + G A rs373182865 4648004 + 4647984 4648024 41 AGGAGAAAGGGGGCCGCAGGGACCTGCAGATCAAGGTGTCA AGGAGAAAGGGGGCCGCAGAGACCTGCAGATCAAGGTGTCA < 41bp 0.534601746883974 0.74566619852835 NA NA prediction 0.422128903288752 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648004 chr17:4648003 synonymous SNV . 0 20 hm7G_associated_SNPs_28507 0 0 0 0 2 ZMYND15 chr17:4647920 3'AG 4647920 Downstream 84bp 25973 chr17 4648003 4648003 1 + G A rs373182865 4648004 + 4647984 4648024 41 AGGAGAAAGGGGGCCGCAGGGACCTGCAGATCAAGGTGTCA AGGAGAAAGGGGGCCGCAGAGACCTGCAGATCAAGGTGTCA < 41bp 0.534601746883974 0.74566619852835 NA NA prediction 0.422128903288752 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4648004 chr17:4648003 synonymous SNV . 0 20 hm7G_associated_SNPs_28507 0 0 0 0 2 ZMYND15 chr17:4648073 5'GT 4648073 Upstream 71bp 25974 chr6 138201287 138201287 1 + C T LGG 138201288 + 138201268 138201308 41 CGTGCCTGGGGAGGGAATGCGGCACCCTTGGAAGCACCATG CGTGCCTGGGGAGGGAATGTGGCACCCTTGGAAGCACCATG < 41bp 0.514700426459168 0.72576340949716 NA NA prediction 0.422125966075984 Functional Gain - TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138201288 chr6:138201287 synonymous SNV 0.993 0 20 hm7G_associated_SNPs_28508 0 0 1 0 1 TNFAIP3 chr6:138201208 3'AG 138201208 Downstream 80bp 25975 chr12 107114621 107114621 1 + C T LUSC 107114622 + 107114602 107114642 41 TTTCGGCACAAGGGTGATCCGGGACATGACCTTGCACAGCG TTTCGGCACAAGGGTGATCTGGGACATGACCTTGCACAGCG < 41bp 0.531924373667535 0.742985898267607 NA NA prediction 0.422123049200144 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107114622 chr12:107114621 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28509 0 0 0 0 2 RFX4 chr12:107114537 3'AG 107114537 Downstream 85bp 25976 chr12 107114621 107114621 1 + C T LUSC 107114622 + 107114602 107114642 41 TTTCGGCACAAGGGTGATCCGGGACATGACCTTGCACAGCG TTTCGGCACAAGGGTGATCTGGGACATGACCTTGCACAGCG < 41bp 0.531924373667535 0.742985898267607 NA NA prediction 0.422123049200144 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107114622 chr12:107114621 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28509 0 0 0 0 2 RFX4 chr12:107114654 5'GT 107114654 Upstream 34bp 25977 chr1 230898441 230898441 1 + C T LIHC 230898442 + 230898422 230898462 41 GGACGTGGTGATCGATGACCGCCTGCCCACCTTCAGGGACC GGACGTGGTGATCGATGACTGCCTGCCCACCTTCAGGGACC < 41bp 0.511023402288882 0.722084385620231 NA NA prediction 0.422121966662698 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230898442 chr1:230898441 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_28511 0 0 0 0 2 CAPN9 chr1:230898399 3'AG 230898399 Downstream 43bp 25978 chr1 230898441 230898441 1 + C T LIHC 230898442 + 230898422 230898462 41 GGACGTGGTGATCGATGACCGCCTGCCCACCTTCAGGGACC GGACGTGGTGATCGATGACTGCCTGCCCACCTTCAGGGACC < 41bp 0.511023402288882 0.722084385620231 NA NA prediction 0.422121966662698 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230898442 chr1:230898441 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_28511 0 0 0 0 2 CAPN9 chr1:230898532 5'GT 230898532 Upstream 92bp 25979 chr4 38916616 38916616 1 + C T rs149833714 38916617 + 38916597 38916637 41 TGGAGAGAACCGCGCACTACGGGATGCTGTTTGATGAATAT TGGAGAGAACCGCGCACTATGGGATGCTGTTTGATGAATAT < 41bp 0.511198663068387 0.722255806547385 NA NA prediction 0.422114286957997 Functional Gain - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38916617 chr4:38916616 synonymous SNV . 0 20 hm7G_associated_SNPs_28512 0 0 1 0 2 FAM114A1 chr4:38916542 3'AG 38916542 Downstream 75bp 25980 chr4 38916616 38916616 1 + C T rs149833714 38916617 + 38916597 38916637 41 TGGAGAGAACCGCGCACTACGGGATGCTGTTTGATGAATAT TGGAGAGAACCGCGCACTATGGGATGCTGTTTGATGAATAT < 41bp 0.511198663068387 0.722255806547385 NA NA prediction 0.422114286957997 Functional Gain - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38916617 chr4:38916616 synonymous SNV . 0 20 hm7G_associated_SNPs_28512 0 0 1 0 2 FAM114A1 chr4:38916694 5'GT 38916694 Upstream 79bp 25981 chr6 41554889 41554889 1 + C T KIRC 41554890 + 41554870 41554910 41 GGGCCCCTCCAGACCCTTCCGCAAGGTGAGCACCCGCCACT GGGCCCCTCCAGACCCTTCTGCAAGGTGAGCACCCGCCACT < 41bp 0.500329951404328 0.711386768075288 NA NA prediction 0.42211363334192 Functional Gain - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41554890 chr6:41554889 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_28513 0 0 0 0 1 FOXP4 chr6:41554894 5'GT 41554894 Upstream 6bp 25982 chr12 124228803 124228803 1 + C T STAD 124228804 + 124228784 124228824 41 CTGTGATGTTTGGAGACTTCGGACATGGCTTTGTGATGTTT CTGTGATGTTTGGAGACTTTGGACATGGCTTTGTGATGTTT < 41bp 0.511953421078303 0.723009395323015 NA NA prediction 0.422111948489422 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124228804 chr12:124228803 synonymous SNV . 0 20 hm7G_associated_SNPs_28514 0 0 1 0 2 ATP6V0A2 chr12:124228748 3'AG 124228748 Downstream 56bp 25983 chr12 124228803 124228803 1 + C T STAD 124228804 + 124228784 124228824 41 CTGTGATGTTTGGAGACTTCGGACATGGCTTTGTGATGTTT CTGTGATGTTTGGAGACTTTGGACATGGCTTTGTGATGTTT < 41bp 0.511953421078303 0.723009395323015 NA NA prediction 0.422111948489422 Functional Gain - ATP6V0A2 ENSG00000185344 CDS Human protein_coding chr12:124228804 chr12:124228803 synonymous SNV . 0 20 hm7G_associated_SNPs_28514 0 0 1 0 2 ATP6V0A2 chr12:124228884 5'GT 124228884 Upstream 82bp 25984 chr11 94353244 94353244 1 + C T STAD 94353245 + 94353225 94353265 41 ATGTCATCTATGATGACAACGGCTTGAAGCCCGACCATATG ATGTCATCTATGATGACAATGGCTTGAAGCCCGACCATATG < 41bp 0.49736212621485 0.711049724544608 NA NA prediction 0.422099449089216 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94353245 chr11:94353244 synonymous SNV . 0 20 hm7G_associated_SNPs_28517 0 0 0 0 2 PIWIL4 chr11:94353163 3'AG 94353163 Downstream 82bp 25985 chr11 94353244 94353244 1 + C T STAD 94353245 + 94353225 94353265 41 ATGTCATCTATGATGACAACGGCTTGAAGCCCGACCATATG ATGTCATCTATGATGACAATGGCTTGAAGCCCGACCATATG < 41bp 0.49736212621485 0.711049724544608 NA NA prediction 0.422099449089216 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94353245 chr11:94353244 synonymous SNV . 0 20 hm7G_associated_SNPs_28517 0 0 0 0 2 PIWIL4 chr11:94353310 5'GT 94353310 Upstream 67bp 25986 chr17 75208079 75208079 1 + C T READ 75208080 + 75208060 75208100 41 CAGTCATCACTTGGGATTTCGACGTGTGCAAAGGGGACATT CAGTCATCACTTGGGATTTTGACGTGTGCAAAGGGGACATT < 41bp 0.509798211769246 0.720847901510985 NA NA prediction 0.422099379483479 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75208080 chr17:75208079 synonymous SNV . 0 20 hm7G_associated_SNPs_28518 0 0 1 0 1 SEC14L1 chr17:75208032 3'AG 75208032 Downstream 48bp 25987 chr20 39987095 39987095 1 + G A COAD 39987096 + 39987076 39987116 41 CAGGATGTCTTTGCCTACCGGCAGGTGGGCCTGCCTGAGTC CAGGATGTCTTTGCCTACCAGCAGGTGGGCCTGCCTGAGTC < 41bp 0.494354299547263 0.711035648311014 NA NA prediction 0.422071296622028 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39987096 chr20:39987095 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_28520 0 0 1 0 2 LPIN3 chr20:39987079 3'AG 39987079 Downstream 17bp 25988 chr20 39987095 39987095 1 + G A COAD 39987096 + 39987076 39987116 41 CAGGATGTCTTTGCCTACCGGCAGGTGGGCCTGCCTGAGTC CAGGATGTCTTTGCCTACCAGCAGGTGGGCCTGCCTGAGTC < 41bp 0.494354299547263 0.711035648311014 NA NA prediction 0.422071296622028 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39987096 chr20:39987095 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_28520 0 0 1 0 2 LPIN3 chr20:39987182 5'GT 39987182 Upstream 88bp 25989 chr9 100124541 100124541 1 + C T UCEC 100124542 + 100124522 100124562 41 CGTCCCAGACAGGTAGAGGCGCATGGGCCTGTGGGTCTCGG CGTCCCAGACAGGTAGAGGTGCATGGGCCTGTGGGTCTCGG < 41bp 0.499807837187007 0.7110353340837 NA NA prediction 0.422070668167399 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100124542 chr9:100124541 synonymous SNV . 0 20 hm7G_associated_SNPs_28521 0 0 0 0 1 CCDC180 chr9:100124478 3'AG 100124478 Downstream 64bp 25990 chr6 161143499 161143499 1 + C T UCEC 161143500 + 161143480 161143520 41 TGGTGATGGACAGAGCTACCGAGGCACATCCTCCACCACCA TGGTGATGGACAGAGCTACTGAGGCACATCCTCCACCACCA < 41bp 0.504858140726453 0.715892773446862 NA NA prediction 0.422069265440818 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161143500 chr6:161143499 stopgain 0.562 0 20 hm7G_associated_SNPs_28522 0 0 0 0 1 PLG chr6:161143440 3'AG 161143440 Downstream 60bp 25991 chr4 55599284 55599284 1 + C T UCEC 55599285 + 55599265 55599305 41 TATCCTCCTTACTCATGGTCGGATCACAAAGATTTGTGATT TATCCTCCTTACTCATGGTTGGATCACAAAGATTTGTGATT < 41bp 0.50570830125118 0.716739620072643 NA NA prediction 0.422062637642926 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55599285 chr4:55599284 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_28523 0 0 1 0 1 KIT chr4:55599358 5'GT 55599358 Upstream 75bp 25992 chr3 50220954 50220954 1 + G A SKCM 50220955 + 50220935 50220975 41 GAGGGGCCCAACTACCAGTGGATGCCCTTCTCAGGGAAGAT GAGGGGCCCAACTACCAGTAGATGCCCTTCTCAGGGAAGAT < 41bp 0.513836995456039 0.724868240578307 NA NA prediction 0.422062490244535 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220955 chr3:50220954 stopgain 1.000 1 20 hm7G_associated_SNPs_28524 0 0 0 0 1 SEMA3F chr3:50220997 5'GT 50220997 Upstream 44bp 25993 chr19 17298813 17298813 1 + C T STAD 17298814 + 17298794 17298834 41 CGGCATGCTGGAGACCGTGCGCATCCGGAGGTCAGGGTACA CGGCATGCTGGAGACCGTGTGCATCCGGAGGTCAGGGTACA < 41bp 0.514248888563029 0.725279951068412 NA NA prediction 0.422062125010767 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17298814 chr19:17298813 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_28525 0 0 1 0 2 MYO9B chr19:17298744 3'AG 17298744 Downstream 70bp 25994 chr19 17298813 17298813 1 + C T STAD 17298814 + 17298794 17298834 41 CGGCATGCTGGAGACCGTGCGCATCCGGAGGTCAGGGTACA CGGCATGCTGGAGACCGTGTGCATCCGGAGGTCAGGGTACA < 41bp 0.514248888563029 0.725279951068412 NA NA prediction 0.422062125010767 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17298814 chr19:17298813 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_28525 0 0 1 0 2 MYO9B chr19:17298854 5'GT 17298854 Upstream 42bp 25995 chr10 7759687 7759687 1 + G T GBM 7759688 + 7759668 7759708 41 TACCAGGAGGTGAAGTGGAGGAAGCTGGGCTCCTATGAGCA TACCAGGAGGTGAAGTGGATGAAGCTGGGCTCCTATGAGCA < 41bp 0.692323025429319 0.903352015461141 NA NA prediction 0.422057980063643 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7759688 chr10:7759687 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28526 0 0 1 0 2 ITIH2 chr10:7759589 3'AG 7759589 Downstream 99bp 25996 chr10 7759687 7759687 1 + G T GBM 7759688 + 7759668 7759708 41 TACCAGGAGGTGAAGTGGAGGAAGCTGGGCTCCTATGAGCA TACCAGGAGGTGAAGTGGATGAAGCTGGGCTCCTATGAGCA < 41bp 0.692323025429319 0.903352015461141 NA NA prediction 0.422057980063643 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7759688 chr10:7759687 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28526 0 0 1 0 2 ITIH2 chr10:7759751 5'GT 7759751 Upstream 65bp 25997 chr8 27279824 27279824 1 + C T COAD 27279825 + 27279805 27279845 41 CCTTTCTCCCCACCAGCTCCGGAACGACTACATGCAGCGCT CCTTTCTCCCCACCAGCTCTGGAACGACTACATGCAGCGCT < 41bp 0.509679720598708 0.720706881696829 NA NA prediction 0.422054322196241 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27279825 chr8:27279824 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_28527 0 0 1 0 2 PTK2B chr8:27279821 3'AG 27279821 Downstream 4bp 25998 chr8 27279824 27279824 1 + C T COAD 27279825 + 27279805 27279845 41 CCTTTCTCCCCACCAGCTCCGGAACGACTACATGCAGCGCT CCTTTCTCCCCACCAGCTCTGGAACGACTACATGCAGCGCT < 41bp 0.509679720598708 0.720706881696829 NA NA prediction 0.422054322196241 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27279825 chr8:27279824 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_28527 0 0 1 0 2 PTK2B chr8:27279900 5'GT 27279900 Upstream 77bp 25999 chrX 21871589 21871589 1 + C T SKCM 21871590 + 21871570 21871610 41 ACTCATTTGCAACTTATATCGCCAGTCCAGCAGCTAAGGAT ACTCATTTGCAACTTATATTGCCAGTCCAGCAGCTAAGGAT < 41bp 0.500457378433813 0.71148433387143 NA NA prediction 0.422053910875233 Functional Gain - MBTPS2 ENSG00000012174 CDS Human protein_coding chrX:21871590 chrX:21871589 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_28528 0 0 0 0 1 MBTPS2 chrX:21871621 5'GT 21871621 Upstream 33bp 26000 chr1 26881685 26881685 1 + G T LAML 26881686 + 26881666 26881706 41 CCCTTCCAGGGGAAGGACCGGAAGGAGACCATGACACTGAT CCCTTCCAGGGGAAGGACCTGAAGGAGACCATGACACTGAT < 41bp 0.697408371421878 0.908432659829117 NA NA prediction 0.422048576814479 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26881686 chr1:26881685 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_28529 0 0 1 0 2 RPS6KA1 chr1:26881642 3'AG 26881642 Downstream 44bp 26001 chr1 26881685 26881685 1 + G T LAML 26881686 + 26881666 26881706 41 CCCTTCCAGGGGAAGGACCGGAAGGAGACCATGACACTGAT CCCTTCCAGGGGAAGGACCTGAAGGAGACCATGACACTGAT < 41bp 0.697408371421878 0.908432659829117 NA NA prediction 0.422048576814479 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26881686 chr1:26881685 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_28529 0 0 1 0 2 RPS6KA1 chr1:26881712 5'GT 26881712 Upstream 28bp 26002 chr19 46834419 46834419 1 + G A rs115778680 46834420 + 46834400 46834440 41 TGTTTTCCTCCAGGACCCTGGCCCAGAGCTCAGAGGACGAG TGTTTTCCTCCAGGACCCTAGCCCAGAGCTCAGAGGACGAG < 41bp 0.505982490040652 0.717002630950213 NA NA prediction 0.422040281819123 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46834420 chr19:46834419 synonymous SNV . 0 20 hm7G_associated_SNPs_28530 0 0 0 0 1 HIF3A chr19:46834413 3'AG 46834413 Downstream 7bp 26003 chr8 17409481 17409481 1 + C T UCEC 17409482 + 17409462 17409502 41 TCGCAGCTGGTTCTCTCTGCGCCTTGTCAACAAGGTACATT TCGCAGCTGGTTCTCTCTGTGCCTTGTCAACAAGGTACATT < 41bp 0.520976781014544 0.73199603687101 NA NA prediction 0.422038511712932 Functional Gain - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17409482 chr8:17409481 synonymous SNV . 0 20 hm7G_associated_SNPs_28531 0 0 1 0 1 SLC7A2 chr8:17409495 5'GT 17409495 Upstream 15bp 26004 chr15 22933765 22933765 1 + C T UCEC 22933766 + 22933746 22933786 41 AGTCTCTGCAGCAGCAGCTCGAAGTGATTTCTGGCTACGAA AGTCTCTGCAGCAGCAGCTTGAAGTGATTTCTGGCTACGAA < 41bp 0.493594602863895 0.711014011465286 NA NA prediction 0.422028022930572 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22933766 chr15:22933765 synonymous SNV . 0 20 hm7G_associated_SNPs_28532 0 0 1 0 1 CYFIP1 chr15:22933748 3'AG 22933748 Downstream 18bp 26005 chr17 56329723 56329723 1 + C T BRCA 56329724 + 56329704 56329744 41 AAGCCTGGCCAGCCGCCTCCGCAACCTCAGCAGCCCCCTGG AAGCCTGGCCAGCCGCCTCTGCAACCTCAGCAGCCCCCTGG < 41bp 0.544456357030245 0.755461787781413 NA NA prediction 0.422010861502336 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56329724 chr17:56329723 nonsynonymous SNV 0.962 5 20 hm7G_associated_SNPs_28536 0 0 0 0 1 LPO chr17:56329651 3'AG 56329651 Downstream 73bp 26006 chr17 9760756 9760756 1 + C T OV 9760757 + 9760737 9760777 41 CAGAAAACTCCACTGCACGCGCAACTACATCCACATGAACT CAGAAAACTCCACTGCACGTGCAACTACATCCACATGAACT < 41bp 0.503302759023602 0.71430805795799 NA NA prediction 0.422010597868776 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9760757 chr17:9760756 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28537 0 0 0 0 1 GLP2R chr17:9760740 3'AG 9760740 Downstream 17bp 26007 chr1 36557330 36557330 1 + G T THYM 36557331 + 36557311 36557351 41 ATGTCTTTGAGCCTGCCCGGGCCCAGTTTAACGGGAAAGGC ATGTCTTTGAGCCTGCCCGTGCCCAGTTTAACGGGAAAGGC < 41bp 0.700030852890325 0.911033938372915 NA NA prediction 0.422006170965181 Functional Gain - ADPRHL2 ENSG00000116863 CDS Human protein_coding chr1:36557331 chr1:36557330 synonymous SNV . 0 20 hm7G_associated_SNPs_28538 0 0 0 0 1 ADPRHL2 chr1:36557426 5'GT 36557426 Upstream 97bp 26008 chr6 158490642 158490642 1 + C T SARC 158490643 + 158490623 158490663 41 AGATACATTCTGTTGACTTCGGCACAGCTGGTGGGCGTCTG AGATACATTCTGTTGACTTTGGCACAGCTGGTGGGCGTCTG < 41bp 0.52006156461628 0.731063246801316 NA NA prediction 0.42200336437007 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158490643 chr6:158490642 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_28539 0 0 0 0 2 SYNJ2 chr6:158490565 3'AG 158490565 Downstream 78bp 26009 chr6 158490642 158490642 1 + C T SARC 158490643 + 158490623 158490663 41 AGATACATTCTGTTGACTTCGGCACAGCTGGTGGGCGTCTG AGATACATTCTGTTGACTTTGGCACAGCTGGTGGGCGTCTG < 41bp 0.52006156461628 0.731063246801316 NA NA prediction 0.42200336437007 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158490643 chr6:158490642 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_28539 0 0 0 0 2 SYNJ2 chr6:158490705 5'GT 158490705 Upstream 64bp 26010 chr14 77712968 77712968 1 + C T SKCM 77712969 + 77712949 77712989 41 TAGTTTGGATGTCTTTCTCCGCTGGCTCTTTGACATCTACT TAGTTTGGATGTCTTTCTCTGCTGGCTCTTTGACATCTACT < 41bp 0.519917770525603 0.730918138380608 NA NA prediction 0.422000735710011 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77712969 chr14:77712968 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_28540 0 0 0 0 2 TMEM63C chr14:77712952 3'AG 77712952 Downstream 17bp 26011 chr14 77712968 77712968 1 + C T SKCM 77712969 + 77712949 77712989 41 TAGTTTGGATGTCTTTCTCCGCTGGCTCTTTGACATCTACT TAGTTTGGATGTCTTTCTCTGCTGGCTCTTTGACATCTACT < 41bp 0.519917770525603 0.730918138380608 NA NA prediction 0.422000735710011 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77712969 chr14:77712968 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_28540 0 0 0 0 2 TMEM63C chr14:77713017 5'GT 77713017 Upstream 50bp 26012 chr12 119583269 119583269 1 + C T ACC 119583270 + 119583250 119583290 41 GAGGACGTTCCCAGGAGTACGACTCAGGAAATGACACGTCC GAGGACGTTCCCAGGAGTATGACTCAGGAAATGACACGTCC < 41bp 0.513946751130142 0.724937279295973 NA NA prediction 0.421981056331663 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119583270 chr12:119583269 synonymous SNV . 0 20 hm7G_associated_SNPs_28541 0 0 1 0 1 SRRM4 chr12:119583186 3'AG 119583186 Downstream 84bp 26013 chr11 64950667 64950667 1 + G A OV 64950668 + 64950648 64950688 41 ACATCTGCCAGGGAGCACTGGGTAGGCCCCCAGGGCGTCGG ACATCTGCCAGGGAGCACTAGGTAGGCCCCCAGGGCGTCGG < 41bp 0.551212971529181 0.76220286012397 NA NA prediction 0.421979777189579 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950668 chr11:64950667 synonymous SNV . 0 20 hm7G_associated_SNPs_28542 0 0 1 0 2 CAPN1 chr11:64950599 3'AG 64950599 Downstream 69bp 26014 chr11 64950667 64950667 1 + G A OV 64950668 + 64950648 64950688 41 ACATCTGCCAGGGAGCACTGGGTAGGCCCCCAGGGCGTCGG ACATCTGCCAGGGAGCACTAGGTAGGCCCCCAGGGCGTCGG < 41bp 0.551212971529181 0.76220286012397 NA NA prediction 0.421979777189579 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64950668 chr11:64950667 synonymous SNV . 0 20 hm7G_associated_SNPs_28542 0 0 1 0 2 CAPN1 chr11:64950668 5'GT 64950668 Upstream 2bp 26015 chr11 134131182 134131182 1 + G T UCEC 134131183 + 134131163 134131203 41 CTCTAGCTTCCTGCTCCCTGGGGGCTGCCCACGCCTCTGTC CTCTAGCTTCCTGCTCCCTTGGGGCTGCCCACGCCTCTGTC < 41bp 0.353889996227348 0.710989216732563 NA NA prediction 0.421978433465126 Functional Gain - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131183 chr11:134131182 synonymous SNV . 0 20 hm7G_associated_SNPs_28543 0 0 1 0 2 ACAD8 chr11:134131169 3'AG 134131169 Downstream 14bp 26016 chr11 134131182 134131182 1 + G T UCEC 134131183 + 134131163 134131203 41 CTCTAGCTTCCTGCTCCCTGGGGGCTGCCCACGCCTCTGTC CTCTAGCTTCCTGCTCCCTTGGGGCTGCCCACGCCTCTGTC < 41bp 0.353889996227348 0.710989216732563 NA NA prediction 0.421978433465126 Functional Gain - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131183 chr11:134131182 synonymous SNV . 0 20 hm7G_associated_SNPs_28543 0 0 1 0 2 ACAD8 chr11:134131266 5'GT 134131266 Upstream 85bp 26017 chr3 126748891 126748891 1 + G T LUSC 126748892 + 126748872 126748912 41 TCGGAGATCTACTTGACACGGCTACTGGCCACCAAGGTGGG TCGGAGATCTACTTGACACTGCTACTGGCCACCAAGGTGGG < 41bp 0.364534428071234 0.710987224964751 NA NA prediction 0.421974449929502 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126748892 chr3:126748891 nonsynonymous SNV 0.726 4 20 hm7G_associated_SNPs_28544 0 0 0 0 1 PLXNA1 chr3:126748907 5'GT 126748907 Upstream 17bp 26018 chr9 137777101 137777101 1 + G A SKCM 137777102 + 137777082 137777122 41 CAGGCCCGCGTACCTGCAAGGACCTGCTAGACCGAGGGCAC CAGGCCCGCGTACCTGCAAAGACCTGCTAGACCGAGGGCAC < 41bp 0.527100733014534 0.738082940265685 NA NA prediction 0.421964414502301 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777102 chr9:137777101 synonymous SNV . 0 20 hm7G_associated_SNPs_28546 0 0 0 0 1 FCN2 chr9:137777085 3'AG 137777085 Downstream 17bp 26019 chr19 917677 917677 1 + G A SKCM 917678 + 917658 917698 41 GATGCTGCTGGGCCTGGTGGGGAACTCGCTGGTCATCTACG GATGCTGCTGGGCCTGGTGAGGAACTCGCTGGTCATCTACG < 41bp 0.550203023300048 0.761183579046379 NA NA prediction 0.421961111492662 Functional Gain - KISS1R ENSG00000116014 CDS Human protein_coding chr19:917678 chr19:917677 nonsynonymous SNV 0.254 4 20 hm7G_associated_SNPs_28548 0 0 1 0 1 KISS1R chr19:917746 5'GT 917746 Upstream 70bp 26020 chr9 135413023 135413023 1 + G T HNSC 135413024 + 135413004 135413044 41 TTTGATCTGCTGCAGCACCGGTACCTGCAGCTGTGGGTACA TTTGATCTGCTGCAGCACCTGTACCTGCAGCTGTGGGTACA < 41bp 0.692715047463835 0.903690660291668 NA NA prediction 0.421951225655665 Functional Gain - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135413024 chr9:135413023 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_28550 0 0 0 0 2 CFAP77 chr9:135412988 3'AG 135412988 Downstream 36bp 26021 chr9 135413023 135413023 1 + G T HNSC 135413024 + 135413004 135413044 41 TTTGATCTGCTGCAGCACCGGTACCTGCAGCTGTGGGTACA TTTGATCTGCTGCAGCACCTGTACCTGCAGCTGTGGGTACA < 41bp 0.692715047463835 0.903690660291668 NA NA prediction 0.421951225655665 Functional Gain - CFAP77 ENSG00000188523 CDS Human protein_coding chr9:135413024 chr9:135413023 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_28550 0 0 0 0 2 CFAP77 chr9:135413093 5'GT 135413093 Upstream 71bp 26022 chr17 47218741 47218741 1 + G A CESC 47218742 + 47218722 47218762 41 AACTCCCAAGTCCTGCCCCGGGTGTCCAGAAGCTGAAGCTT AACTCCCAAGTCCTGCCCCAGGTGTCCAGAAGCTGAAGCTT < 41bp 0.483096161220736 0.710974047121801 NA NA prediction 0.421948094243601 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47218742 chr17:47218741 synonymous SNV . 0 20 hm7G_associated_SNPs_28551 0 0 0 0 1 B4GALNT2 chr17:47218809 5'GT 47218809 Upstream 69bp 26023 chrX 71416699 71416699 1 + G T LUSC 71416700 + 71416680 71416720 41 ATGGAAAAGTTAAAGTCTGGGATGAGATTCAATGAAGTGGC ATGGAAAAGTTAAAGTCTGTGATGAGATTCAATGAAGTGGC < 41bp 0.681931667212928 0.892904093819272 NA NA prediction 0.421944853212688 Functional Gain - PIN4 ENSG00000102309 CDS Human protein_coding chrX:71416700 chrX:71416699 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28552 0 0 1 0 2 PIN4 chrX:71416635 3'AG 71416635 Downstream 65bp 26024 chrX 71416699 71416699 1 + G T LUSC 71416700 + 71416680 71416720 41 ATGGAAAAGTTAAAGTCTGGGATGAGATTCAATGAAGTGGC ATGGAAAAGTTAAAGTCTGTGATGAGATTCAATGAAGTGGC < 41bp 0.681931667212928 0.892904093819272 NA NA prediction 0.421944853212688 Functional Gain - PIN4 ENSG00000102309 CDS Human protein_coding chrX:71416700 chrX:71416699 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28552 0 0 1 0 2 PIN4 chrX:71416754 5'GT 71416754 Upstream 56bp 26025 chr11 134131194 134131194 1 + C T UCEC 134131195 + 134131175 134131215 41 GCTCCCTGGGGGCTGCCCACGCCTCTGTCATCCTCACCCGA GCTCCCTGGGGGCTGCCCATGCCTCTGTCATCCTCACCCGA < 41bp 0.494891513500988 0.710970969101784 NA NA prediction 0.421941938203568 Functional Gain - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131195 chr11:134131194 synonymous SNV . 0 20 hm7G_associated_SNPs_28553 0 0 1 0 2 ACAD8 chr11:134131169 3'AG 134131169 Downstream 26bp 26026 chr11 134131194 134131194 1 + C T UCEC 134131195 + 134131175 134131215 41 GCTCCCTGGGGGCTGCCCACGCCTCTGTCATCCTCACCCGA GCTCCCTGGGGGCTGCCCATGCCTCTGTCATCCTCACCCGA < 41bp 0.494891513500988 0.710970969101784 NA NA prediction 0.421941938203568 Functional Gain - ACAD8 ENSG00000151498 CDS Human protein_coding chr11:134131195 chr11:134131194 synonymous SNV . 0 20 hm7G_associated_SNPs_28553 0 0 1 0 2 ACAD8 chr11:134131266 5'GT 134131266 Upstream 73bp 26027 chr1 104120131 104120131 1 + G T LUSC 104120132 + 104120112 104120152 41 GATGTTAATGATTGGGTTGGGCCACCAAATAATAATGGAGT GATGTTAATGATTGGGTTGTGCCACCAAATAATAATGGAGT < 41bp 0.399630856183377 0.710970590773601 NA NA prediction 0.421941181547202 Functional Gain - AMY2B ENSG00000240038 CDS Human protein_coding chr1:104120132 chr1:104120131 nonsynonymous SNV 0.934 4 20 hm7G_associated_SNPs_28554 0 0 0 1 2 AMY2B chr1:104120112 3'AG 104120112 Downstream 20bp 26028 chr1 104120131 104120131 1 + G T LUSC 104120132 + 104120112 104120152 41 GATGTTAATGATTGGGTTGGGCCACCAAATAATAATGGAGT GATGTTAATGATTGGGTTGTGCCACCAAATAATAATGGAGT < 41bp 0.399630856183377 0.710970590773601 NA NA prediction 0.421941181547202 Functional Gain - AMY2B ENSG00000240038 CDS Human protein_coding chr1:104120132 chr1:104120131 nonsynonymous SNV 0.934 4 20 hm7G_associated_SNPs_28554 0 0 0 1 2 AMY2B chr1:104120230 5'GT 104120230 Upstream 100bp 26029 chr7 44734033 44734033 1 + G A UCEC 44734034 + 44734014 44734054 41 TCTGAGCAGGTGTGTTACCGGCGCAACGGCCACAACGAGAT TCTGAGCAGGTGTGTTACCAGCGCAACGGCCACAACGAGAT < 41bp 0.495449891609288 0.710968826542989 NA NA prediction 0.421937653085978 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44734034 chr7:44734033 nonsynonymous SNV 0.963 5 20 hm7G_associated_SNPs_28556 0 0 1 0 1 OGDH chr7:44734023 3'AG 44734023 Downstream 11bp 26030 chr15 101565124 101565124 1 + G A ACC 101565125 + 101565105 101565145 41 TGGTCTGGAACCTGGCGCTGGGGGAGGAGGCCGTGGCCAAC TGGTCTGGAACCTGGCGCTAGGGGAGGAGGCCGTGGCCAAC < 41bp 0.502827003266396 0.713794195427836 NA NA prediction 0.421934384322881 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101565125 chr15:101565124 synonymous SNV . 0 20 hm7G_associated_SNPs_28558 0 0 0 0 1 LRRK1 chr15:101565172 5'GT 101565172 Upstream 49bp 26031 chr10 42972745 42972745 1 + G A rs181802624 42972746 + 42972726 42972766 41 CTGGATGCTGGAGGCTGGAGGCAGTGACGCAGCAACAGCGC CTGGATGCTGGAGGCTGGAAGCAGTGACGCAGCAACAGCGC < 41bp 0.527748951987525 0.738715522282313 NA NA prediction 0.421933140589576 Functional Gain - LINC00839 ENSG00000185904 ncRNA_exonic Human lincRNA chr10:42972746 chr10:42972745 . . 0 20 hm7G_associated_SNPs_28559 0 0 0 0 1 LINC00839 chr10:42972709 3'AG 42972709 Downstream 37bp 26032 chr3 107520087 107520087 1 + C T UCEC 107520088 + 107520068 107520108 41 TGTCTGCGTTCTTTAGCCTCGCTGCGCTGGCTGAAGTGGCA TGTCTGCGTTCTTTAGCCTTGCTGCGCTGGCTGAAGTGGCA < 41bp 0.499670109757357 0.710965864084287 NA NA prediction 0.421931728168574 Functional Gain - BBX ENSG00000114439 CDS Human protein_coding chr3:107520088 chr3:107520087 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_28560 0 0 1 0 1 BBX chr3:107520128 5'GT 107520128 Upstream 42bp 26033 chr11 73103451 73103451 1 + G A COAD 73103452 + 73103432 73103472 41 GTGTGCAACCTCCTCAAGCGGAAGGGCTACCACTGCACGGC GTGTGCAACCTCCTCAAGCAGAAGGGCTACCACTGCACGGC < 41bp 0.514032382316411 0.724994170060539 NA NA prediction 0.421923575488256 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73103452 chr11:73103451 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28561 0 0 1 0 1 RELT chr11:73103513 5'GT 73103513 Upstream 63bp 26034 chr17 6662984 6662984 1 + G A UCEC 6662985 + 6662965 6663005 41 GTGTGTGTGTGTTTAGGTTGGGTGTACGATGTGTCAGCAGA GTGTGTGTGTGTTTAGGTTAGGTGTACGATGTGTCAGCAGA < 41bp 0.502971814924613 0.713931685613699 NA NA prediction 0.421919741378173 Functional Gain - XAF1 ENSG00000132530 CDS Human protein_coding chr17:6662985 chr17:6662984 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28562 0 0 0 0 2 XAF1 chr17:6662981 3'AG 6662981 Downstream 4bp 26035 chr17 6662984 6662984 1 + G A UCEC 6662985 + 6662965 6663005 41 GTGTGTGTGTGTTTAGGTTGGGTGTACGATGTGTCAGCAGA GTGTGTGTGTGTTTAGGTTAGGTGTACGATGTGTCAGCAGA < 41bp 0.502971814924613 0.713931685613699 NA NA prediction 0.421919741378173 Functional Gain - XAF1 ENSG00000132530 CDS Human protein_coding chr17:6662985 chr17:6662984 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28562 0 0 0 0 2 XAF1 chr17:6663037 5'GT 6663037 Upstream 54bp 26036 chr19 1531836 1531836 1 + G T rs184257515 1531837 + 1531817 1531857 41 GGCTACCAGCTCTTGGACGGGGGGCGCACGGGACGGCACCC GGCTACCAGCTCTTGGACGTGGGGCGCACGGGACGGCACCC < 41bp 0.701371763318815 0.912329505322608 NA NA prediction 0.421915484007585 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1531837 chr19:1531836 nonsynonymous SNV 0.090 2 20 hm7G_associated_SNPs_28563 0 0 0 0 1 PLK5 chr19:1531737 3'AG 1531737 Downstream 100bp 26037 chr20 45717955 45717955 1 + G A SKCM 45717956 + 45717936 45717976 41 GCCGCACCGGGCCTCCGACGGGAAGCTCCGAGGCCGGTCTA GCCGCACCGGGCCTCCGACAGGAAGCTCCGAGGCCGGTCTA < 41bp 0.533403415120026 0.744360089563166 NA NA prediction 0.42191334888628 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717956 chr20:45717955 nonsynonymous SNV 0.919 3 20 hm7G_associated_SNPs_28564 0 0 0 0 2 EYA2 chr20:45717878 3'AG 45717878 Downstream 78bp 26038 chr20 45717955 45717955 1 + G A SKCM 45717956 + 45717936 45717976 41 GCCGCACCGGGCCTCCGACGGGAAGCTCCGAGGCCGGTCTA GCCGCACCGGGCCTCCGACAGGAAGCTCCGAGGCCGGTCTA < 41bp 0.533403415120026 0.744360089563166 NA NA prediction 0.42191334888628 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717956 chr20:45717955 nonsynonymous SNV 0.919 3 20 hm7G_associated_SNPs_28564 0 0 0 0 2 EYA2 chr20:45718020 5'GT 45718020 Upstream 66bp 26039 chr19 53050850 53050850 1 + G T HNSC 53050851 + 53050831 53050871 41 GCACAGAGGGCTTTGTACAGGGAAGTGATGTTGGAGAACTA GCACAGAGGGCTTTGTACATGGAAGTGATGTTGGAGAACTA < 41bp 0.39256801115778 0.71095126042736 NA NA prediction 0.42190252085472 Functional Gain - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53050851 chr19:53050850 nonsynonymous SNV 0.416 2 20 hm7G_associated_SNPs_28567 0 0 0 0 2 ZNF808 chr19:53050765 3'AG 53050765 Downstream 86bp 26040 chr19 53050850 53050850 1 + G T HNSC 53050851 + 53050831 53050871 41 GCACAGAGGGCTTTGTACAGGGAAGTGATGTTGGAGAACTA GCACAGAGGGCTTTGTACATGGAAGTGATGTTGGAGAACTA < 41bp 0.39256801115778 0.71095126042736 NA NA prediction 0.42190252085472 Functional Gain - ZNF808 ENSG00000198482 CDS Human protein_coding chr19:53050851 chr19:53050850 nonsynonymous SNV 0.416 2 20 hm7G_associated_SNPs_28567 0 0 0 0 2 ZNF808 chr19:53050891 5'GT 53050891 Upstream 42bp 26041 chr22 30762178 30762178 1 + G A rs41281643 30762179 + 30762159 30762199 41 AGCACTATGACCATGTTCCGGGTGACCCCGAGTTCACGCAG AGCACTATGACCATGTTCCAGGTGACCCCGAGTTCACGCAG < 41bp 0.533086490783628 0.744034117834883 NA NA prediction 0.421895254102511 Functional Gain - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30762179 chr22:30762178 synonymous SNV . 0 20 hm7G_associated_SNPs_28569 0 0 0 0 1 CCDC157 chr22:30762237 5'GT 30762237 Upstream 60bp 26042 chr1 9784867 9784867 1 + G A UCEC 9784868 + 9784848 9784888 41 TCCCCTACCTGCAGGTTCCGGGGCTACTGTGAAAGGGCCTA TCCCCTACCTGCAGGTTCCAGGGCTACTGTGAAAGGGCCTA < 41bp 0.509810086679549 0.720757238602029 NA NA prediction 0.421894303844961 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9784868 chr1:9784867 nonsynonymous SNV 0.961 3 20 hm7G_associated_SNPs_28570 0 0 1 0 1 PIK3CD chr1:9784862 3'AG 9784862 Downstream 6bp 26043 chr10 135195066 135195066 1 + G T BLCA 135195067 + 135195047 135195087 41 ACTGGAACGGGTCCTTCCAGGAGGCAGCCTTTCCCGGGGAG ACTGGAACGGGTCCTTCCATGAGGCAGCCTTTCCCGGGGAG < 41bp 0.357107738458143 0.710939912539724 NA NA prediction 0.421879825079449 Functional Gain - PAOX ENSG00000148832 CDS Human protein_coding chr10:135195067 chr10:135195066 nonsynonymous SNV 0.761 0 20 hm7G_associated_SNPs_28571 0 0 1 0 1 PAOX chr10:135195163 5'GT 135195163 Upstream 98bp 26044 chr12 6925313 6925313 1 + G A rs10849525 6925314 + 6925294 6925334 41 TTACAGTTGAAAAGCTGACGGGCAGTGGCGAGCTGTGGTGG TTACAGTTGAAAAGCTGACAGGCAGTGGCGAGCTGTGGTGG < 41bp 0.535876233941053 0.746815221688804 NA NA prediction 0.421877975495503 Functional Gain - CD4 ENSG00000010610 CDS Human protein_coding chr12:6925314 chr12:6925313 synonymous SNV . 0 20 hm7G_associated_SNPs_28573 0 0 0 0 1 CD4 chr12:6925222 3'AG 6925222 Downstream 92bp 26045 chr15 76462198 76462198 1 + C T UCEC 76462199 + 76462179 76462219 41 TTGGGATCTGGGATTACATCGAAAACAAAATAGAGGTAAAG TTGGGATCTGGGATTACATTGAAAACAAAATAGAGGTAAAG < 41bp 0.513488995174933 0.724426905600973 NA NA prediction 0.42187582085208 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76462199 chr15:76462198 stopgain . 0 20 hm7G_associated_SNPs_28574 0 0 0 0 2 TMEM266 chr15:76462157 3'AG 76462157 Downstream 42bp 26046 chr15 76462198 76462198 1 + C T UCEC 76462199 + 76462179 76462219 41 TTGGGATCTGGGATTACATCGAAAACAAAATAGAGGTAAAG TTGGGATCTGGGATTACATTGAAAACAAAATAGAGGTAAAG < 41bp 0.513488995174933 0.724426905600973 NA NA prediction 0.42187582085208 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76462199 chr15:76462198 stopgain . 0 20 hm7G_associated_SNPs_28574 0 0 0 0 2 TMEM266 chr15:76462213 5'GT 76462213 Upstream 16bp 26047 chrX 69719055 69719055 1 + G A UCEC 69719056 + 69719036 69719076 41 AAGGCCTGTGATCATCCTGGGCCCAATGAAGGACCGAGTCA AAGGCCTGTGATCATCCTGAGCCCAATGAAGGACCGAGTCA < 41bp 0.504500589959794 0.715437405067752 NA NA prediction 0.421873630215916 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69719056 chrX:69719055 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28575 0 0 1 0 2 DLG3 chrX:69719026 3'AG 69719026 Downstream 30bp 26048 chrX 69719055 69719055 1 + G A UCEC 69719056 + 69719036 69719076 41 AAGGCCTGTGATCATCCTGGGCCCAATGAAGGACCGAGTCA AAGGCCTGTGATCATCCTGAGCCCAATGAAGGACCGAGTCA < 41bp 0.504500589959794 0.715437405067752 NA NA prediction 0.421873630215916 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69719056 chrX:69719055 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28575 0 0 1 0 2 DLG3 chrX:69719127 5'GT 69719127 Upstream 73bp 26049 chr6 155139625 155139625 1 + C T STAD 155139626 + 155139606 155139646 41 TTATTAGATGATTCCTCCCCGGGGCTGTGCTTATGTCTGCA TTATTAGATGATTCCTCCCTGGGGCTGTGCTTATGTCTGCA < 41bp 0.499675907574128 0.710936780951508 NA NA prediction 0.421873561903016 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155139626 chr6:155139625 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_28576 0 0 1 0 1 SCAF8 chr6:155139613 3'AG 155139613 Downstream 13bp 26050 chr2 136479555 136479555 1 + C T rs35003255 136479556 + 136479536 136479576 41 ATCCTCCTGCTGTTCTGCACGGACACATTCCAAACCAACAG ATCCTCCTGCTGTTCTGCATGGACACATTCCAAACCAACAG < 41bp 0.501177846895024 0.712113217411924 NA NA prediction 0.4218707410338 Functional Gain - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136479556 chr2:136479555 synonymous SNV . 0 20 hm7G_associated_SNPs_28578 0 0 0 0 2 R3HDM1 chr2:136479494 3'AG 136479494 Downstream 62bp 26051 chr2 136479555 136479555 1 + C T rs35003255 136479556 + 136479536 136479576 41 ATCCTCCTGCTGTTCTGCACGGACACATTCCAAACCAACAG ATCCTCCTGCTGTTCTGCATGGACACATTCCAAACCAACAG < 41bp 0.501177846895024 0.712113217411924 NA NA prediction 0.4218707410338 Functional Gain - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136479556 chr2:136479555 synonymous SNV . 0 20 hm7G_associated_SNPs_28578 0 0 0 0 2 R3HDM1 chr2:136479576 5'GT 136479576 Upstream 22bp 26052 chrX 48374500 48374500 1 + G A STAD 48374501 + 48374481 48374521 41 GCCTGTGTCTTGTCAAAGCGGTGCCCGCCAGACTGTTCGCA GCCTGTGTCTTGTCAAAGCAGTGCCCGCCAGACTGTTCGCA < 41bp 0.512797682802043 0.723728872692823 NA NA prediction 0.421862379781559 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48374501 chrX:48374500 nonsynonymous SNV 0.805 0 20 hm7G_associated_SNPs_28579 0 0 0 0 2 PORCN chrX:48374449 3'AG 48374449 Downstream 52bp 26053 chrX 48374500 48374500 1 + G A STAD 48374501 + 48374481 48374521 41 GCCTGTGTCTTGTCAAAGCGGTGCCCGCCAGACTGTTCGCA GCCTGTGTCTTGTCAAAGCAGTGCCCGCCAGACTGTTCGCA < 41bp 0.512797682802043 0.723728872692823 NA NA prediction 0.421862379781559 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48374501 chrX:48374500 nonsynonymous SNV 0.805 0 20 hm7G_associated_SNPs_28579 0 0 0 0 2 PORCN chrX:48374534 5'GT 48374534 Upstream 35bp 26054 chrX 18767973 18767973 1 + C T UCEC 18767974 + 18767954 18767994 41 AGATGGGATTATGTGGACTCGATAGATGTCCCAGACTCCTA AGATGGGATTATGTGGACTTGATAGATGTCCCAGACTCCTA < 41bp 0.509461842923757 0.720391124463551 NA NA prediction 0.421858563079587 Functional Gain - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18767974 chrX:18767973 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_28580 0 0 0 0 2 PPEF1 chrX:18767910 3'AG 18767910 Downstream 64bp 26055 chrX 18767973 18767973 1 + C T UCEC 18767974 + 18767954 18767994 41 AGATGGGATTATGTGGACTCGATAGATGTCCCAGACTCCTA AGATGGGATTATGTGGACTTGATAGATGTCCCAGACTCCTA < 41bp 0.509461842923757 0.720391124463551 NA NA prediction 0.421858563079587 Functional Gain - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18767974 chrX:18767973 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_28580 0 0 0 0 2 PPEF1 chrX:18768070 5'GT 18768070 Upstream 98bp 26056 chr16 57689386 57689386 1 + G A rs146704802 57689387 + 57689367 57689407 41 GAGGACGAAAGGCCGGAGCGGGGAGGCTGAGAAGAGACTCC GAGGACGAAAGGCCGGAGCAGGGAGGCTGAGAAGAGACTCC < 41bp 0.523265824801652 0.734193150840679 NA NA prediction 0.421854652078055 Functional Gain - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57689387 chr16:57689386 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28581 0 0 1 0 2 ADGRG1 chr16:57689311 3'AG 57689311 Downstream 76bp 26057 chr16 57689386 57689386 1 + G A rs146704802 57689387 + 57689367 57689407 41 GAGGACGAAAGGCCGGAGCGGGGAGGCTGAGAAGAGACTCC GAGGACGAAAGGCCGGAGCAGGGAGGCTGAGAAGAGACTCC < 41bp 0.523265824801652 0.734193150840679 NA NA prediction 0.421854652078055 Functional Gain - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57689387 chr16:57689386 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28581 0 0 1 0 2 ADGRG1 chr16:57689442 5'GT 57689442 Upstream 57bp 26058 chr16 30518157 30518157 1 + C T PRAD 30518158 + 30518138 30518178 41 CCCCCCGGGACTCTCCTTCCGCAAGGTGGAGATGCTGAAGG CCCCCCGGGACTCTCCTTCTGCAAGGTGGAGATGCTGAAGG < 41bp 0.506854848108928 0.717780637122589 NA NA prediction 0.421851578027321 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30518158 chr16:30518157 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_28582 0 0 0 0 1 ITGAL chr16:30518177 5'GT 30518177 Upstream 21bp 26059 chr3 12447429 12447429 1 + C T GBM 12447430 + 12447410 12447450 41 GAGAAGGAGAAGCTGTTGGCGGAGATCTCCAGTGATATCGA GAGAAGGAGAAGCTGTTGGTGGAGATCTCCAGTGATATCGA < 41bp 0.500934470079086 0.711857428410112 NA NA prediction 0.421845916662053 Functional Gain - PPARG ENSG00000132170 CDS Human protein_coding chr3:12447430 chr3:12447429 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28583 0 0 0 0 1 PPARG chr3:12447381 3'AG 12447381 Downstream 49bp 26060 chr21 47805828 47805828 1 + C T UCEC 47805829 + 47805809 47805849 41 GCTGCAGCAGAGGCGGGAGCGGGAGAACCGGGAAGGCGCAA GCTGCAGCAGAGGCGGGAGTGGGAGAACCGGGAAGGCGCAA < 41bp 0.515787889498645 0.726710666856308 NA NA prediction 0.421845554715325 Functional Gain - PCNT ENSG00000160299 CDS Human protein_coding chr21:47805829 chr21:47805828 nonsynonymous SNV 0.094 3 20 hm7G_associated_SNPs_28584 0 0 1 0 2 PCNT chr21:47805747 3'AG 47805747 Downstream 82bp 26061 chr21 47805828 47805828 1 + C T UCEC 47805829 + 47805809 47805849 41 GCTGCAGCAGAGGCGGGAGCGGGAGAACCGGGAAGGCGCAA GCTGCAGCAGAGGCGGGAGTGGGAGAACCGGGAAGGCGCAA < 41bp 0.515787889498645 0.726710666856308 NA NA prediction 0.421845554715325 Functional Gain - PCNT ENSG00000160299 CDS Human protein_coding chr21:47805829 chr21:47805828 nonsynonymous SNV 0.094 3 20 hm7G_associated_SNPs_28584 0 0 1 0 2 PCNT chr21:47805898 5'GT 47805898 Upstream 71bp 26062 chr15 34646000 34646000 1 + G T PRAD 34646001 + 34645981 34646021 41 AGCTGATGAATGGGTCTCAGGGCCTGTCTCCTGCAACCCCT AGCTGATGAATGGGTCTCATGGCCTGTCTCCTGCAACCCCT < 41bp 0.344540535215584 0.710920945620932 NA NA prediction 0.421841891241864 Functional Gain - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34646001 chr15:34646000 nonsynonymous SNV 0.662 2 20 hm7G_associated_SNPs_28585 0 0 0 0 2 NUTM1 chr15:34645937 3'AG 34645937 Downstream 64bp 26063 chr15 34646000 34646000 1 + G T PRAD 34646001 + 34645981 34646021 41 AGCTGATGAATGGGTCTCAGGGCCTGTCTCCTGCAACCCCT AGCTGATGAATGGGTCTCATGGCCTGTCTCCTGCAACCCCT < 41bp 0.344540535215584 0.710920945620932 NA NA prediction 0.421841891241864 Functional Gain - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34646001 chr15:34646000 nonsynonymous SNV 0.662 2 20 hm7G_associated_SNPs_28585 0 0 0 0 2 NUTM1 chr15:34646073 5'GT 34646073 Upstream 74bp 26064 chr16 57778386 57778386 1 + G A UCEC 57778387 + 57778367 57778407 41 TCGTGGCCGGCTCTCAGTCGGGCTCCATCCGTGTCTGGGAC TCGTGGCCGGCTCTCAGTCAGGCTCCATCCGTGTCTGGGAC < 41bp 0.55834556035739 0.769255954364331 NA NA prediction 0.421820788013882 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778387 chr16:57778386 synonymous SNV . 0 20 hm7G_associated_SNPs_28588 0 0 1 0 2 KATNB1 chr16:57778306 3'AG 57778306 Downstream 81bp 26065 chr16 57778386 57778386 1 + G A UCEC 57778387 + 57778367 57778407 41 TCGTGGCCGGCTCTCAGTCGGGCTCCATCCGTGTCTGGGAC TCGTGGCCGGCTCTCAGTCAGGCTCCATCCGTGTCTGGGAC < 41bp 0.55834556035739 0.769255954364331 NA NA prediction 0.421820788013882 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778387 chr16:57778386 synonymous SNV . 0 20 hm7G_associated_SNPs_28588 0 0 1 0 2 KATNB1 chr16:57778423 5'GT 57778423 Upstream 38bp 26066 chr8 125083798 125083798 1 + G T LUAD 125083799 + 125083779 125083819 41 TTCTAGCTCTGAGGACAGCGGGCAGCTGAGAATCCAGCAAG TTCTAGCTCTGAGGACAGCTGGCAGCTGAGAATCCAGCAAG < 41bp 0.368962098590514 0.71089987008673 NA NA prediction 0.421799740173459 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125083799 chr8:125083798 nonsynonymous SNV 0.947 4 20 hm7G_associated_SNPs_28590 0 0 0 0 2 FER1L6 chr8:125083747 3'AG 125083747 Downstream 52bp 26067 chr8 125083798 125083798 1 + G T LUAD 125083799 + 125083779 125083819 41 TTCTAGCTCTGAGGACAGCGGGCAGCTGAGAATCCAGCAAG TTCTAGCTCTGAGGACAGCTGGCAGCTGAGAATCCAGCAAG < 41bp 0.368962098590514 0.71089987008673 NA NA prediction 0.421799740173459 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125083799 chr8:125083798 nonsynonymous SNV 0.947 4 20 hm7G_associated_SNPs_28590 0 0 0 0 2 FER1L6 chr8:125083872 5'GT 125083872 Upstream 75bp 26068 chr2 201758102 201758102 1 + C T UCEC 201758103 + 201758083 201758123 41 CTGCAGTGAAAGGAATTGACGGTGTTTCTGTCACTTCTTTT CTGCAGTGAAAGGAATTGATGGTGTTTCTGTCACTTCTTTT < 41bp 0.500190308168928 0.711085704656385 NA NA prediction 0.421790792974915 Functional Gain - NIF3L1 ENSG00000196290 CDS Human protein_coding chr2:201758103 chr2:201758102 synonymous SNV . 0 20 hm7G_associated_SNPs_28592 0 0 1 0 1 NIF3L1 chr2:201758131 5'GT 201758131 Upstream 30bp 26069 chr5 149580736 149580736 1 + G A OV 149580737 + 149580717 149580757 41 CCTCCCAGGGGCCTGGAAGGGCATCCAGTTCTATCTCACCC CCTCCCAGGGGCCTGGAAGAGCATCCAGTTCTATCTCACCC < 41bp 0.502251280730757 0.713146565478102 NA NA prediction 0.421790569494689 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149580737 chr5:149580736 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28593 0 0 0 0 2 SLC6A7 chr5:149580652 3'AG 149580652 Downstream 85bp 26070 chr5 149580736 149580736 1 + G A OV 149580737 + 149580717 149580757 41 CCTCCCAGGGGCCTGGAAGGGCATCCAGTTCTATCTCACCC CCTCCCAGGGGCCTGGAAGAGCATCCAGTTCTATCTCACCC < 41bp 0.502251280730757 0.713146565478102 NA NA prediction 0.421790569494689 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149580737 chr5:149580736 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28593 0 0 0 0 2 SLC6A7 chr5:149580786 5'GT 149580786 Upstream 51bp 26071 chrX 48544175 48544175 1 + G A COAD 48544176 + 48544156 48544196 41 GACGAGGCCCAGGCCTTCCGGGCCCTCGTGCAGGAGAAGAT GACGAGGCCCAGGCCTTCCAGGCCCTCGTGCAGGAGAAGAT < 41bp 0.544447704873052 0.755340935570499 NA NA prediction 0.421786461394894 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48544176 chrX:48544175 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_28594 1 0 0 0 2 WAS chrX:48544123 3'AG 48544123 Downstream 53bp 26072 chrX 48544175 48544175 1 + G A COAD 48544176 + 48544156 48544196 41 GACGAGGCCCAGGCCTTCCGGGCCCTCGTGCAGGAGAAGAT GACGAGGCCCAGGCCTTCCAGGCCCTCGTGCAGGAGAAGAT < 41bp 0.544447704873052 0.755340935570499 NA NA prediction 0.421786461394894 Functional Gain - WAS ENSG00000015285 CDS Human protein_coding chrX:48544176 chrX:48544175 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_28594 1 0 0 0 2 WAS chrX:48544225 5'GT 48544225 Upstream 51bp 26073 chr16 70502847 70502847 1 + G A rs16970191 70502848 + 70502828 70502868 41 CCTGCACCTACCTAGGCTTGGACTCCGGAGCCCGGCCTGTC CCTGCACCTACCTAGGCTTAGACTCCGGAGCCCGGCCTGTC < 41bp 0.52698475069643 0.737877092516273 NA NA prediction 0.421784683639685 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70502848 chr16:70502847 synonymous SNV . 0 20 hm7G_associated_SNPs_28596 0 0 1 0 2 FUK chr16:70502752 3'AG 70502752 Downstream 96bp 26074 chr16 70502847 70502847 1 + G A rs16970191 70502848 + 70502828 70502868 41 CCTGCACCTACCTAGGCTTGGACTCCGGAGCCCGGCCTGTC CCTGCACCTACCTAGGCTTAGACTCCGGAGCCCGGCCTGTC < 41bp 0.52698475069643 0.737877092516273 NA NA prediction 0.421784683639685 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70502848 chr16:70502847 synonymous SNV . 0 20 hm7G_associated_SNPs_28596 0 0 1 0 2 FUK chr16:70502871 5'GT 70502871 Upstream 25bp 26075 chr10 96961886 96961886 1 + C T UCEC 96961887 + 96961867 96961907 41 TGCCCTTAGCCATGGAGACCGGCTGATGATAATCTTGCCCC TGCCCTTAGCCATGGAGACTGGCTGATGATAATCTTGCCCC < 41bp 0.50258839771637 0.713476438059352 NA NA prediction 0.421776080685965 Functional Gain - ACSM6 ENSG00000173124 CDS Human protein_coding chr10:96961887 chr10:96961886 nonsynonymous SNV 0.011 3 20 hm7G_associated_SNPs_28597 0 0 0 0 1 ACSM6 chr10:96961952 5'GT 96961952 Upstream 67bp 26076 chr8 21955237 21955237 1 + C T CESC 21955238 + 21955218 21955258 41 GCTCTTCCAGAAACTCCTCCGACTTGGTGGGACTGCTTCCG GCTCTTCCAGAAACTCCTCTGACTTGGTGGGACTGCTTCCG < 41bp 0.505892391729358 0.716777671998187 NA NA prediction 0.421770560537658 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21955238 chr8:21955237 stopgain 0.939 0 20 hm7G_associated_SNPs_28600 0 0 1 0 1 FAM160B2 chr8:21955228 3'AG 21955228 Downstream 10bp 26077 chr14 66953417 66953417 1 + G T COAD 66953418 + 66953398 66953438 41 ACTTGAAGGAATTGAATGAGGACTTAAAGCTAAGGAAGCAG ACTTGAAGGAATTGAATGATGACTTAAAGCTAAGGAAGCAG < 41bp 0.657715959287518 0.868600583338427 NA NA prediction 0.421769248101819 Functional Gain - CCDC196 ENSG00000196553 ncRNA_exonic Human protein_coding chr14:66953418 chr14:66953417 . . 0 20 hm7G_associated_SNPs_28601 0 0 0 0 1 CCDC196 chr14:66953375 3'AG 66953375 Downstream 43bp 26078 chr2 38903119 38903119 1 + G T GBM 38903120 + 38903100 38903140 41 GGCCAACCGAATCGCCAAAGGAACCTTCAAGGTGGATGGGA GGCCAACCGAATCGCCAAATGAACCTTCAAGGTGGATGGGA < 41bp 0.687409947908262 0.898273487851894 NA NA prediction 0.421727079887265 Functional Gain - GALM ENSG00000143891 CDS Human protein_coding chr2:38903120 chr2:38903119 stopgain 0.816 1 20 hm7G_associated_SNPs_28610 0 0 1 0 2 GALM chr2:38903054 3'AG 38903054 Downstream 66bp 26079 chr2 38903119 38903119 1 + G T GBM 38903120 + 38903100 38903140 41 GGCCAACCGAATCGCCAAAGGAACCTTCAAGGTGGATGGGA GGCCAACCGAATCGCCAAATGAACCTTCAAGGTGGATGGGA < 41bp 0.687409947908262 0.898273487851894 NA NA prediction 0.421727079887265 Functional Gain - GALM ENSG00000143891 CDS Human protein_coding chr2:38903120 chr2:38903119 stopgain 0.816 1 20 hm7G_associated_SNPs_28610 0 0 1 0 2 GALM chr2:38903208 5'GT 38903208 Upstream 90bp 26080 chr2 135621059 135621059 1 + G A SKCM 135621060 + 135621040 135621080 41 AGGAGGTTCGTGGGTCTGGGGACGTTGCCCATGCAGGCCCC AGGAGGTTCGTGGGTCTGGAGACGTTGCCCATGCAGGCCCC < 41bp 0.498506720558725 0.710858261721647 NA NA prediction 0.421716523443294 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135621060 chr2:135621059 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_28612 0 0 0 0 1 ACMSD chr2:135620965 3'AG 135620965 Downstream 95bp 26081 chr1 37946010 37946010 1 + G A rs201380451 37946011 + 37945991 37946031 41 TGGAGGAAGGAGCAGCCTCGGCCCGACGTGCCCATCACAGG TGGAGGAAGGAGCAGCCTCAGCCCGACGTGCCCATCACAGG < 41bp 0.485404948641002 0.710856434578132 NA NA prediction 0.421712869156265 Functional Gain - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37946011 chr1:37946010 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_28613 0 0 1 0 1 ZC3H12A chr1:37946030 5'GT 37946030 Upstream 21bp 26082 chr11 1856635 1856635 1 + G A SKCM 1856636 + 1856616 1856656 41 GCCACAGGAAGAAGCCCAGGGACAAGGAGTCCGTGGGTCTG GCCACAGGAAGAAGCCCAGAGACAAGGAGTCCGTGGGTCTG < 41bp 0.555625956479747 0.766479267644784 NA NA prediction 0.421706622330074 Functional Gain - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1856636 chr11:1856635 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28614 0 0 0 0 1 SYT8 chr11:1856689 5'GT 1856689 Upstream 55bp 26083 chr19 50386136 50386136 1 + G A LUAD 50386137 + 50386117 50386157 41 GTCCCTGAGCTGAAGAACCGGATCTTCTCGGGGGTGAGTGC GTCCCTGAGCTGAAGAACCAGATCTTCTCGGGGGTGAGTGC < 41bp 0.509927677852717 0.720779294293133 NA NA prediction 0.421703232880831 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386137 chr19:50386136 nonsynonymous SNV 0.633 0 20 hm7G_associated_SNPs_28615 0 0 1 0 2 TBC1D17 chr19:50386149 5'GT 50386149 Upstream 14bp 26084 chr19 50386136 50386136 1 + G A LUAD 50386137 + 50386117 50386157 41 GTCCCTGAGCTGAAGAACCGGATCTTCTCGGGGGTGAGTGC GTCCCTGAGCTGAAGAACCAGATCTTCTCGGGGGTGAGTGC < 41bp 0.509927677852717 0.720779294293133 NA NA prediction 0.421703232880831 Functional Gain - TBC1D17 ENSG00000104946 CDS Human protein_coding chr19:50386137 chr19:50386136 nonsynonymous SNV 0.633 0 20 hm7G_associated_SNPs_28615 0 0 1 0 2 TBC1D17 chr19:50386230 5'GT 50386230 Upstream 95bp 26085 chr16 81965174 81965174 1 + C T LUSC 81965175 + 81965155 81965195 41 AAGCAGCAGGGCGATCCTCCGGTGGAGTTTGCCACAGACAG AAGCAGCAGGGCGATCCTCTGGTGGAGTTTGCCACAGACAG < 41bp 0.53278219099893 0.743630371635491 NA NA prediction 0.421696361273122 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81965175 chr16:81965174 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_28619 0 0 0 0 2 PLCG2 chr16:81965102 3'AG 81965102 Downstream 73bp 26086 chr16 81965174 81965174 1 + C T LUSC 81965175 + 81965155 81965195 41 AAGCAGCAGGGCGATCCTCCGGTGGAGTTTGCCACAGACAG AAGCAGCAGGGCGATCCTCTGGTGGAGTTTGCCACAGACAG < 41bp 0.53278219099893 0.743630371635491 NA NA prediction 0.421696361273122 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81965175 chr16:81965174 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_28619 0 0 0 0 2 PLCG2 chr16:81965259 5'GT 81965259 Upstream 86bp 26087 chr15 29393880 29393880 1 + C T BLCA 29393881 + 29393861 29393901 41 TGTAGTGCTGATGGCCAGACGCCGCATGCCCCGGTCAGCCT TGTAGTGCTGATGGCCAGATGCCGCATGCCCCGGTCAGCCT < 41bp 0.49618969860722 0.710846284955124 NA NA prediction 0.421692569910248 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29393881 chr15:29393880 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_28620 0 0 1 0 1 APBA2 chr15:29393802 3'AG 29393802 Downstream 79bp 26088 chr15 89169933 89169933 1 + C T BLCA 89169934 + 89169914 89169954 41 CCGCTGGAGTGGCATCACTCGGCAGCACATGCGCAAGGCTG CCGCTGGAGTGGCATCACTTGGCAGCACATGCGCAAGGCTG < 41bp 0.505504787965052 0.716341759225027 NA NA prediction 0.421673942519951 Functional Gain - AEN ENSG00000181026 CDS Human protein_coding chr15:89169934 chr15:89169933 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_28622 0 0 1 0 1 AEN chr15:89169980 5'GT 89169980 Upstream 48bp 26089 chr7 150696368 150696368 1 + C T SKCM 150696369 + 150696349 150696389 41 TTGGGGGCCTGGAGTTCCCCGCAGCCCCCTTCAGTGGCTGG TTGGGGGCCTGGAGTTCCCTGCAGCCCCCTTCAGTGGCTGG < 41bp 0.528514794619135 0.739348638434115 NA NA prediction 0.42166768762996 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150696369 chr7:150696368 synonymous SNV . 0 20 hm7G_associated_SNPs_28623 0 0 0 0 2 NOS3 chr7:150696278 3'AG 150696278 Downstream 91bp 26090 chr7 150696368 150696368 1 + C T SKCM 150696369 + 150696349 150696389 41 TTGGGGGCCTGGAGTTCCCCGCAGCCCCCTTCAGTGGCTGG TTGGGGGCCTGGAGTTCCCTGCAGCCCCCTTCAGTGGCTGG < 41bp 0.528514794619135 0.739348638434115 NA NA prediction 0.42166768762996 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150696369 chr7:150696368 synonymous SNV . 0 20 hm7G_associated_SNPs_28623 0 0 0 0 2 NOS3 chr7:150696452 5'GT 150696452 Upstream 85bp 26091 chr11 57373595 57373595 1 + G A STAD 57373596 + 57373576 57373616 41 AGCTCATCAACACCTGGGTGGCCAAGAACACCAACAACAAG AGCTCATCAACACCTGGGTAGCCAAGAACACCAACAACAAG < 41bp 0.528533099970755 0.73936432652539 NA NA prediction 0.42166245310927 Functional Gain - SERPING1 ENSG00000149131 CDS Human protein_coding chr11:57373596 chr11:57373595 synonymous SNV . 0 20 hm7G_associated_SNPs_28624 0 0 1 0 1 SERPING1 chr11:57373686 5'GT 57373686 Upstream 92bp 26092 chr12 119588916 119588916 1 + C T HNSC 119588917 + 119588897 119588937 41 ACCCATGAAAGGGTGTTCCCGCAGCTCCTCCTATGCCAGCA ACCCATGAAAGGGTGTTCCTGCAGCTCCTCCTATGCCAGCA < 41bp 0.49810978989212 0.710829315758509 NA NA prediction 0.421658631517017 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119588917 chr12:119588916 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_28626 0 0 1 0 1 SRRM4 chr12:119588822 3'AG 119588822 Downstream 95bp 26093 chr1 44121406 44121406 1 + C T UCEC 44121407 + 44121387 44121427 41 GAAGAAAGCCATGACTGTTCGAGAGTTCCGCAAGATAGCCA GAAGAAAGCCATGACTGTTTGAGAGTTCCGCAAGATAGCCA < 41bp 0.507701612992325 0.718530796482307 NA NA prediction 0.421658366979965 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44121407 chr1:44121406 stopgain 0.992 0 20 hm7G_associated_SNPs_28627 0 0 1 0 1 KDM4A chr1:44121437 5'GT 44121437 Upstream 32bp 26094 chr12 122246128 122246128 1 + C T SARC 122246129 + 122246109 122246149 41 TACAGGGGAAACCCGAATGCGGTTCTATGAACTGTTGGTCA TACAGGGGAAACCCGAATGTGGTTCTATGAACTGTTGGTCA < 41bp 0.507147629351774 0.717976304688219 NA NA prediction 0.42165735067289 Functional Gain - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122246129 chr12:122246128 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28628 0 0 1 0 2 SETD1B chr12:122246114 3'AG 122246114 Downstream 15bp 26095 chr12 122246128 122246128 1 + C T SARC 122246129 + 122246109 122246149 41 TACAGGGGAAACCCGAATGCGGTTCTATGAACTGTTGGTCA TACAGGGGAAACCCGAATGTGGTTCTATGAACTGTTGGTCA < 41bp 0.507147629351774 0.717976304688219 NA NA prediction 0.42165735067289 Functional Gain - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122246129 chr12:122246128 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28628 0 0 1 0 2 SETD1B chr12:122246226 5'GT 122246226 Upstream 99bp 26096 chr1 167653175 167653175 1 + G A rs112577989 167653176 + 167653156 167653196 41 ATGCCAATGTGGACAACTCGGCGTCCCCCTCGGTGGCCCAG ATGCCAATGTGGACAACTCAGCGTCCCCCTCGGTGGCCCAG < 41bp 0.547020301911649 0.757843723693967 NA NA prediction 0.421646843564636 Functional Gain - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167653176 chr1:167653175 synonymous SNV . 0 20 hm7G_associated_SNPs_28629 0 0 1 0 2 RCSD1 chr1:167653137 3'AG 167653137 Downstream 39bp 26097 chr1 167653175 167653175 1 + G A rs112577989 167653176 + 167653156 167653196 41 ATGCCAATGTGGACAACTCGGCGTCCCCCTCGGTGGCCCAG ATGCCAATGTGGACAACTCAGCGTCCCCCTCGGTGGCCCAG < 41bp 0.547020301911649 0.757843723693967 NA NA prediction 0.421646843564636 Functional Gain - RCSD1 ENSG00000198771 CDS Human protein_coding chr1:167653176 chr1:167653175 synonymous SNV . 0 20 hm7G_associated_SNPs_28629 0 0 1 0 2 RCSD1 chr1:167653238 5'GT 167653238 Upstream 64bp 26098 chr2 206592664 206592664 1 + C T UCEC 206592665 + 206592645 206592685 41 GCCATCGCAACACAGGGAGCGATTTCCAGGGAAACACAGAA GCCATCGCAACACAGGGAGTGATTTCCAGGGAAACACAGAA < 41bp 0.506320381129624 0.717143308854992 NA NA prediction 0.421645855450736 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206592665 chr2:206592664 nonsynonymous SNV 0.964 5 20 hm7G_associated_SNPs_28630 0 0 1 0 1 NRP2 chr2:206592615 3'AG 206592615 Downstream 50bp 26099 chr4 166405608 166405608 1 + C T COAD 166405609 + 166405589 166405629 41 ACAGCTCCTCCCCAGATGACGCCATTTTCCAAAGCTTGGCC ACAGCTCCTCCCCAGATGATGCCATTTTCCAAAGCTTGGCC < 41bp 0.510872195388429 0.721694769362196 NA NA prediction 0.421645147947536 Functional Gain - CPE ENSG00000109472 CDS Human protein_coding chr4:166405609 chr4:166405608 synonymous SNV . 0 20 hm7G_associated_SNPs_28631 0 0 0 0 1 CPE chr4:166405574 3'AG 166405574 Downstream 35bp 26100 chr1 1246303 1246303 1 + G A rs41285824 1246304 + 1246284 1246324 41 CACAGGTACGGAGGATGACGGCTGTGCTGGTGGCCGTGGGG CACAGGTACGGAGGATGACAGCTGTGCTGGTGGCCGTGGGG < 41bp 0.479841823814843 0.710820479392482 NA NA prediction 0.421640958784963 Functional Gain - PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246304 chr1:1246303 synonymous SNV . 0 20 hm7G_associated_SNPs_28632 0 0 1 0 1 PUSL1 chr1:1246289 3'AG 1246289 Downstream 15bp 26101 chr15 72855741 72855741 1 + C T UCEC 72855742 + 72855722 72855762 41 ACTTGTATTTCAGTGCAATCGACTGTTAAAGTGGTGTCCTG ACTTGTATTTCAGTGCAATTGACTGTTAAAGTGGTGTCCTG < 41bp 0.501156833609546 0.71197600227231 NA NA prediction 0.421638337325529 Functional Gain - ARIH1 ENSG00000166233 CDS Human protein_coding chr15:72855742 chr15:72855741 stopgain 1.000 1 20 hm7G_associated_SNPs_28633 0 0 1 0 1 ARIH1 chr15:72855735 3'AG 72855735 Downstream 7bp 26102 chr17 2923853 2923853 1 + C T ESCA 2923854 + 2923834 2923874 41 CTCTTCCCCCGCCTGCACACGGGCTCAGAAGGCCAGGGCGA CTCTTCCCCCGCCTGCACATGGGCTCAGAAGGCCAGGGCGA < 41bp 0.500442823236322 0.711258353036723 NA NA prediction 0.421631059600802 Functional Gain - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2923854 chr17:2923853 nonsynonymous SNV 0.983 3 20 hm7G_associated_SNPs_28634 0 0 0 0 2 RAP1GAP2 chr17:2923771 3'AG 2923771 Downstream 83bp 26103 chr17 2923853 2923853 1 + C T ESCA 2923854 + 2923834 2923874 41 CTCTTCCCCCGCCTGCACACGGGCTCAGAAGGCCAGGGCGA CTCTTCCCCCGCCTGCACATGGGCTCAGAAGGCCAGGGCGA < 41bp 0.500442823236322 0.711258353036723 NA NA prediction 0.421631059600802 Functional Gain - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2923854 chr17:2923853 nonsynonymous SNV 0.983 3 20 hm7G_associated_SNPs_28634 0 0 0 0 2 RAP1GAP2 chr17:2923889 5'GT 2923889 Upstream 37bp 26104 chr19 54387494 54387494 1 + G A HNSC 54387495 + 54387475 54387515 41 CTGGGAAGGGCCCCCAGACGGACGTGAGTGCTCGGACACCT CTGGGAAGGGCCCCCAGACAGACGTGAGTGCTCGGACACCT < 41bp 0.496968800392888 0.710810744131651 NA NA prediction 0.421621488263302 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54387495 chr19:54387494 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28638 0 0 0 0 2 PRKCG chr19:54387415 3'AG 54387415 Downstream 80bp 26105 chr19 54387494 54387494 1 + G A HNSC 54387495 + 54387475 54387515 41 CTGGGAAGGGCCCCCAGACGGACGTGAGTGCTCGGACACCT CTGGGAAGGGCCCCCAGACAGACGTGAGTGCTCGGACACCT < 41bp 0.496968800392888 0.710810744131651 NA NA prediction 0.421621488263302 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54387495 chr19:54387494 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28638 0 0 0 0 2 PRKCG chr19:54387497 5'GT 54387497 Upstream 4bp 26106 chr17 35831204 35831204 1 + C T GBM 35831205 + 35831185 35831225 41 TTCTTCGTTGTAGTGATTCCGGCCTGAGTCCTTCCATTCCA TTCTTCGTTGTAGTGATTCTGGCCTGAGTCCTTCCATTCCA < 41bp 0.499930782184659 0.710808304487496 NA NA prediction 0.421616608974992 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35831205 chr17:35831204 synonymous SNV . 0 20 hm7G_associated_SNPs_28639 0 0 0 0 2 TADA2A chr17:35831198 3'AG 35831198 Downstream 7bp 26107 chr17 35831204 35831204 1 + C T GBM 35831205 + 35831185 35831225 41 TTCTTCGTTGTAGTGATTCCGGCCTGAGTCCTTCCATTCCA TTCTTCGTTGTAGTGATTCTGGCCTGAGTCCTTCCATTCCA < 41bp 0.499930782184659 0.710808304487496 NA NA prediction 0.421616608974992 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35831205 chr17:35831204 synonymous SNV . 0 20 hm7G_associated_SNPs_28639 0 0 0 0 2 TADA2A chr17:35831241 5'GT 35831241 Upstream 38bp 26108 chr17 18863897 18863897 1 + G A UCEC 18863898 + 18863878 18863918 41 GTACATTCAGAAGCGCTACGGGGGCCAGCGGATCCGCATGT GTACATTCAGAAGCGCTACAGGGGCCAGCGGATCCGCATGT < 41bp 0.511959657949067 0.722767503525477 NA NA prediction 0.421615691152819 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18863898 chr17:18863897 nonsynonymous SNV 0.951 5 20 hm7G_associated_SNPs_28640 0 0 0 0 2 SLC5A10 chr17:18863861 3'AG 18863861 Downstream 37bp 26109 chr17 18863897 18863897 1 + G A UCEC 18863898 + 18863878 18863918 41 GTACATTCAGAAGCGCTACGGGGGCCAGCGGATCCGCATGT GTACATTCAGAAGCGCTACAGGGGCCAGCGGATCCGCATGT < 41bp 0.511959657949067 0.722767503525477 NA NA prediction 0.421615691152819 Functional Gain - SLC5A10 ENSG00000154025 CDS Human protein_coding chr17:18863898 chr17:18863897 nonsynonymous SNV 0.951 5 20 hm7G_associated_SNPs_28640 0 0 0 0 2 SLC5A10 chr17:18863965 5'GT 18863965 Upstream 69bp 26110 chr14 105174902 105174902 1 + G A rs200155666 105174903 + 105174883 105174923 41 CCCACCATGGTGGCCCCCCGGGCCAGGAAGGAGCCCAAGGA CCCACCATGGTGGCCCCCCAGGCCAGGAAGGAGCCCAAGGA < 41bp 0.482681296923809 0.710805232458412 NA NA prediction 0.421610464916824 Functional Gain - INF2 ENSG00000203485 CDS Human protein_coding chr14:105174903 chr14:105174902 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_28642 1 0 1 0 1 INF2 chr14:105174924 5'GT 105174924 Upstream 23bp 26111 chrX 30725707 30725707 1 + G T UCEC 30725708 + 30725688 30725728 41 TTTCTTACTATGTAATACAGGCCATAAGGTTGGTTTTTTAA TTTCTTACTATGTAATACATGCCATAAGGTTGGTTTTTTAA < 41bp 0.396766950233389 0.710801640075986 NA NA prediction 0.421603280151972 Functional Gain - GK ENSG00000198814 CDS Human protein_coding chrX:30725708 chrX:30725707 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_28643 0 0 1 0 2 GK chrX:30725673 3'AG 30725673 Downstream 35bp 26112 chrX 30725707 30725707 1 + G T UCEC 30725708 + 30725688 30725728 41 TTTCTTACTATGTAATACAGGCCATAAGGTTGGTTTTTTAA TTTCTTACTATGTAATACATGCCATAAGGTTGGTTTTTTAA < 41bp 0.396766950233389 0.710801640075986 NA NA prediction 0.421603280151972 Functional Gain - GK ENSG00000198814 CDS Human protein_coding chrX:30725708 chrX:30725707 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_28643 0 0 1 0 2 GK chrX:30725715 5'GT 30725715 Upstream 9bp 26113 chr9 140648742 140648742 1 + C T rs45450992 140648743 + 140648723 140648763 41 AGAAGCCCAGCGGTGCCCTCGGTAAATGCCGTGGGGGTGTG AGAAGCCCAGCGGTGCCCTTGGTAAATGCCGTGGGGGTGTG < 41bp 0.503739066287908 0.714532812584767 NA NA prediction 0.421587492593718 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140648743 chr9:140648742 synonymous SNV . 0 20 hm7G_associated_SNPs_28645 2 0 1 0 1 EHMT1 chr9:140648743 5'GT 140648743 Upstream 2bp 26114 chr2 170377373 170377373 1 + G T SKCM 170377374 + 170377354 170377394 41 TTTTTAATGATACCTAGATGGGATGTAATGACCGAATTTCC TTTTTAATGATACCTAGATTGGATGTAATGACCGAATTTCC < 41bp 0.675637067402926 0.886429381719005 NA NA prediction 0.421584628632158 Functional Gain - KLHL41 ENSG00000163093;ENSG00000239474;ENSG00000251569 CDS Human other chr2:170377374 chr2:170377373 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28646 0 0 0 0 1 KLHL41 chr2:170377371 3'AG 170377371 Downstream 3bp 26115 chr14 73732177 73732177 1 + C T UCEC 73732178 + 73732158 73732198 41 GCTTCCCGCCCCCAGCCATCGAGTGGCAGAGAGATGGGCAG GCTTCCCGCCCCCAGCCATTGAGTGGCAGAGAGATGGGCAG < 41bp 0.501467164449493 0.712259146726873 NA NA prediction 0.421583964554759 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73732178 chr14:73732177 synonymous SNV . 0 20 hm7G_associated_SNPs_28647 0 0 1 0 2 PAPLN chr14:73732078 3'AG 73732078 Downstream 100bp 26116 chr14 73732177 73732177 1 + C T UCEC 73732178 + 73732158 73732198 41 GCTTCCCGCCCCCAGCCATCGAGTGGCAGAGAGATGGGCAG GCTTCCCGCCCCCAGCCATTGAGTGGCAGAGAGATGGGCAG < 41bp 0.501467164449493 0.712259146726873 NA NA prediction 0.421583964554759 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73732178 chr14:73732177 synonymous SNV . 0 20 hm7G_associated_SNPs_28647 0 0 1 0 2 PAPLN chr14:73732215 5'GT 73732215 Upstream 39bp 26117 chr22 21349262 21349262 1 + G A COAD 21349263 + 21349243 21349283 41 CTGATAGTGGAGATTGTGCGGCGGAAGCAGCAGCCGCCCCC CTGATAGTGGAGATTGTGCAGCGGAAGCAGCAGCCGCCCCC < 41bp 0.527533383153234 0.738321319070937 NA NA prediction 0.421575871835407 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21349263 chr22:21349262 nonsynonymous SNV 0.983 3 20 hm7G_associated_SNPs_28649 0 0 1 0 1 LZTR1 chr22:21349315 5'GT 21349315 Upstream 54bp 26118 chr3 14964653 14964653 1 + G A COAD 14964654 + 14964634 14964674 41 TTCGGGGAGCTGAAGAAGCGGGGCAGGGCTGTCCCGGGCCT TTCGGGGAGCTGAAGAAGCAGGGCAGGGCTGTCCCGGGCCT < 41bp 0.504046479413661 0.714831172406963 NA NA prediction 0.421569385986605 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14964654 chr3:14964653 nonsynonymous SNV 0.716 3 20 hm7G_associated_SNPs_28651 0 0 0 0 1 FGD5 chr3:14964682 5'GT 14964682 Upstream 30bp 26119 chr11 373228 373228 1 + G A ESCA 373229 + 373209 373249 41 TGGCCTCAGACGACAACTCGGAGTTCTGGCTGAGTCTGGAC TGGCCTCAGACGACAACTCAGAGTTCTGGCTGAGTCTGGAC < 41bp 0.492502443480377 0.710783106779974 NA NA prediction 0.421566213559948 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:373229 chr11:373228 synonymous SNV . 0 20 hm7G_associated_SNPs_28652 0 0 1 0 2 B4GALNT4 chr11:373191 3'AG 373191 Downstream 38bp 26120 chr11 373228 373228 1 + G A ESCA 373229 + 373209 373249 41 TGGCCTCAGACGACAACTCGGAGTTCTGGCTGAGTCTGGAC TGGCCTCAGACGACAACTCAGAGTTCTGGCTGAGTCTGGAC < 41bp 0.492502443480377 0.710783106779974 NA NA prediction 0.421566213559948 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:373229 chr11:373228 synonymous SNV . 0 20 hm7G_associated_SNPs_28652 0 0 1 0 2 B4GALNT4 chr11:373291 5'GT 373291 Upstream 64bp 26121 chr16 27642469 27642469 1 + C T COAD 27642470 + 27642450 27642490 41 CCCCAGTAAAGTCCAGCGCCGAGGATGGCACCAGGTCTGGA CCCCAGTAAAGTCCAGCGCTGAGGATGGCACCAGGTCTGGA < 41bp 0.516106823199017 0.726888009935662 NA NA prediction 0.421562373473289 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27642470 chr16:27642469 stopgain 0.999 1 20 hm7G_associated_SNPs_28653 0 0 1 0 2 KIAA0556 chr16:27642386 3'AG 27642386 Downstream 84bp 26122 chr16 27642469 27642469 1 + C T COAD 27642470 + 27642450 27642490 41 CCCCAGTAAAGTCCAGCGCCGAGGATGGCACCAGGTCTGGA CCCCAGTAAAGTCCAGCGCTGAGGATGGCACCAGGTCTGGA < 41bp 0.516106823199017 0.726888009935662 NA NA prediction 0.421562373473289 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27642470 chr16:27642469 stopgain 0.999 1 20 hm7G_associated_SNPs_28653 0 0 1 0 2 KIAA0556 chr16:27642483 5'GT 27642483 Upstream 15bp 26123 chr17 33328319 33328319 1 + C T LGG 33328320 + 33328300 33328340 41 GGGGCTGAATTCTCCAAATCGGAGGCTCATACAGCTGACGG GGGGCTGAATTCTCCAAATTGGAGGCTCATACAGCTGACGG < 41bp 0.495891842953419 0.71077701934312 NA NA prediction 0.42155403868624 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33328320 chr17:33328319 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_28654 0 0 1 0 1 LIG3 chr17:33328276 3'AG 33328276 Downstream 44bp 26124 chr17 30643292 30643292 1 + G A LUAD 30643293 + 30643273 30643313 41 AGTTCAAGCTGCTGCGGATGGCTGTGGCCCTTATCTGTAGT AGTTCAAGCTGCTGCGGATAGCTGTGGCCCTTATCTGTAGT < 41bp 0.518350989525309 0.729126781420207 NA NA prediction 0.421551583789795 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30643293 chr17:30643292 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_28655 0 0 0 0 2 RHBDL3 chr17:30643251 3'AG 30643251 Downstream 42bp 26125 chr17 30643292 30643292 1 + G A LUAD 30643293 + 30643273 30643313 41 AGTTCAAGCTGCTGCGGATGGCTGTGGCCCTTATCTGTAGT AGTTCAAGCTGCTGCGGATAGCTGTGGCCCTTATCTGTAGT < 41bp 0.518350989525309 0.729126781420207 NA NA prediction 0.421551583789795 Functional Gain - RHBDL3 ENSG00000141314 CDS Human protein_coding chr17:30643293 chr17:30643292 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_28655 0 0 0 0 2 RHBDL3 chr17:30643311 5'GT 30643311 Upstream 20bp 26126 chr2 220478553 220478553 1 + G A SKCM 220478554 + 220478534 220478574 41 CATAGAGCTGGGCCTGGCAGGCCAGAGCCTGCGGCTAGAGT CATAGAGCTGGGCCTGGCAAGCCAGAGCCTGCGGCTAGAGT < 41bp 0.552609539107002 0.763378663689615 NA NA prediction 0.421538249165227 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220478554 chr2:220478553 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_28658 0 0 1 0 2 STK11IP chr2:220478474 3'AG 220478474 Downstream 80bp 26127 chr2 220478553 220478553 1 + G A SKCM 220478554 + 220478534 220478574 41 CATAGAGCTGGGCCTGGCAGGCCAGAGCCTGCGGCTAGAGT CATAGAGCTGGGCCTGGCAAGCCAGAGCCTGCGGCTAGAGT < 41bp 0.552609539107002 0.763378663689615 NA NA prediction 0.421538249165227 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220478554 chr2:220478553 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_28658 0 0 1 0 2 STK11IP chr2:220478652 5'GT 220478652 Upstream 100bp 26128 chr14 93022233 93022233 1 + C T rs199750099 93022234 + 93022214 93022254 41 AAGCTCATCAAAACATGCCCGGTGTGGCTGCAGCTGAGTCT AAGCTCATCAAAACATGCCTGGTGTGGCTGCAGCTGAGTCT < 41bp 0.52252372345026 0.73329066471282 NA NA prediction 0.42153388252512 Functional Gain - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93022234 chr14:93022233 nonsynonymous SNV 0.095 4 20 hm7G_associated_SNPs_28659 0 0 1 0 1 RIN3 chr14:93022300 5'GT 93022300 Upstream 68bp 26129 chr3 13544391 13544391 1 + G T COAD 13544392 + 13544372 13544412 41 ACCTCCCCACAGGGCAATGGGCATGAGCGAGACTTCATGGA ACCTCCCCACAGGGCAATGTGCATGAGCGAGACTTCATGGA < 41bp 0.700370725423612 0.911133187258637 NA NA prediction 0.421524923670049 Functional Gain - HDAC11 ENSG00000163517 CDS Human protein_coding chr3:13544392 chr3:13544391 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_28661 0 0 0 0 1 HDAC11 chr3:13544384 3'AG 13544384 Downstream 8bp 26130 chr1 183194828 183194828 1 + C T MESO 183194829 + 183194809 183194849 41 GCGGAATCTCACAGCCCTCCGCATCCGAGCTACATATGGAG GCGGAATCTCACAGCCCTCTGCATCCGAGCTACATATGGAG < 41bp 0.513174825278402 0.72393726705847 NA NA prediction 0.421524883560135 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183194829 chr1:183194828 nonsynonymous SNV 0.971 2 20 hm7G_associated_SNPs_28662 0 0 0 0 2 LAMC2 chr1:183194743 3'AG 183194743 Downstream 86bp 26131 chr1 183194828 183194828 1 + C T MESO 183194829 + 183194809 183194849 41 GCGGAATCTCACAGCCCTCCGCATCCGAGCTACATATGGAG GCGGAATCTCACAGCCCTCTGCATCCGAGCTACATATGGAG < 41bp 0.513174825278402 0.72393726705847 NA NA prediction 0.421524883560135 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183194829 chr1:183194828 nonsynonymous SNV 0.971 2 20 hm7G_associated_SNPs_28662 0 0 0 0 2 LAMC2 chr1:183194855 5'GT 183194855 Upstream 28bp 26132 chr12 51089684 51089684 1 + C T LUAD 51089685 + 51089665 51089705 41 CTGGGCTATGATGGCACATCGGGACCAAAGAGACGTGAGCT CTGGGCTATGATGGCACATTGGGACCAAAGAGACGTGAGCT < 41bp 0.501285263607785 0.712046474118701 NA NA prediction 0.421522421021832 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51089685 chr12:51089684 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28663 0 0 1 0 2 DIP2B chr12:51089631 3'AG 51089631 Downstream 54bp 26133 chr12 51089684 51089684 1 + C T LUAD 51089685 + 51089665 51089705 41 CTGGGCTATGATGGCACATCGGGACCAAAGAGACGTGAGCT CTGGGCTATGATGGCACATTGGGACCAAAGAGACGTGAGCT < 41bp 0.501285263607785 0.712046474118701 NA NA prediction 0.421522421021832 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51089685 chr12:51089684 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28663 0 0 1 0 2 DIP2B chr12:51089750 5'GT 51089750 Upstream 67bp 26134 chr1 173797501 173797501 1 + C T COAD 173797502 + 173797482 173797522 41 TCTTGGTCCTAAGAGATTTCGATGGGCTTGTTCAAGTTATC TCTTGGTCCTAAGAGATTTTGATGGGCTTGTTCAAGTTATC < 41bp 0.508871874202745 0.719629102483714 NA NA prediction 0.421514456561938 Functional Gain - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173797502 chr1:173797501 synonymous SNV . 0 20 hm7G_associated_SNPs_28665 0 0 1 0 2 DARS2 chr1:173797471 3'AG 173797471 Downstream 31bp 26135 chr1 173797501 173797501 1 + C T COAD 173797502 + 173797482 173797522 41 TCTTGGTCCTAAGAGATTTCGATGGGCTTGTTCAAGTTATC TCTTGGTCCTAAGAGATTTTGATGGGCTTGTTCAAGTTATC < 41bp 0.508871874202745 0.719629102483714 NA NA prediction 0.421514456561938 Functional Gain - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173797502 chr1:173797501 synonymous SNV . 0 20 hm7G_associated_SNPs_28665 0 0 1 0 2 DARS2 chr1:173797537 5'GT 173797537 Upstream 37bp 26136 chr12 6954779 6954779 1 + G A rs147480203 6954780 + 6954760 6954800 41 ATGGAGAGGCCATCTGCACGGGCTCGGATGACGCTTCCTGC ATGGAGAGGCCATCTGCACAGGCTCGGATGACGCTTCCTGC < 41bp 0.544822274028147 0.755578355732431 NA NA prediction 0.421512163408567 Functional Gain - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6954780 chr12:6954779 synonymous SNV . 0 20 hm7G_associated_SNPs_28666 0 0 1 0 1 GNB3 chr12:6954750 3'AG 6954750 Downstream 30bp 26137 chr19 17611177 17611177 1 + C T COAD 17611178 + 17611158 17611198 41 GGACACAATGGAGCTGCTGCGGGATGCCCAGGGCCTCTGCA GGACACAATGGAGCTGCTGTGGGATGCCCAGGGCCTCTGCA < 41bp 0.504570407141701 0.715323987668965 NA NA prediction 0.42150716105453 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17611178 chr19:17611177 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_28667 0 0 1 0 2 SLC27A1 chr19:17611087 3'AG 17611087 Downstream 91bp 26138 chr19 17611177 17611177 1 + C T COAD 17611178 + 17611158 17611198 41 GGACACAATGGAGCTGCTGCGGGATGCCCAGGGCCTCTGCA GGACACAATGGAGCTGCTGTGGGATGCCCAGGGCCTCTGCA < 41bp 0.504570407141701 0.715323987668965 NA NA prediction 0.42150716105453 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17611178 chr19:17611177 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_28667 0 0 1 0 2 SLC27A1 chr19:17611213 5'GT 17611213 Upstream 37bp 26139 chr21 47410319 47410319 1 + G A SKCM 47410320 + 47410300 47410340 41 GGGCAAGCGTGGCATCGACGGGGTGGACGGCGTGAAGGTGA GGGCAAGCGTGGCATCGACAGGGTGGACGGCGTGAAGGTGA < 41bp 0.486589583941238 0.710745070976446 NA NA prediction 0.421490141952892 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47410320 chr21:47410319 nonsynonymous SNV 0.479 5 20 hm7G_associated_SNPs_28669 1 0 0 0 2 COL6A1 chr21:47410292 3'AG 47410292 Downstream 28bp 26140 chr21 47410319 47410319 1 + G A SKCM 47410320 + 47410300 47410340 41 GGGCAAGCGTGGCATCGACGGGGTGGACGGCGTGAAGGTGA GGGCAAGCGTGGCATCGACAGGGTGGACGGCGTGAAGGTGA < 41bp 0.486589583941238 0.710745070976446 NA NA prediction 0.421490141952892 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47410320 chr21:47410319 nonsynonymous SNV 0.479 5 20 hm7G_associated_SNPs_28669 1 0 0 0 2 COL6A1 chr21:47410336 5'GT 47410336 Upstream 18bp 26141 chr8 120429133 120429133 1 + G A SKCM 120429134 + 120429114 120429154 41 GCGAGAGCTGCTCAGATCTGGAGCCATGCGACGAGAGCAGT GCGAGAGCTGCTCAGATCTAGAGCCATGCGACGAGAGCAGT < 41bp 0.527001034693754 0.73774536483961 NA NA prediction 0.42148866029171 Functional Gain - NOV ENSG00000136999 CDS Human protein_coding chr8:120429134 chr8:120429133 synonymous SNV . 0 20 hm7G_associated_SNPs_28671 0 0 0 0 1 NOV chr8:120429209 5'GT 120429209 Upstream 77bp 26142 chr2 27721620 27721620 1 + G A LUSC 27721621 + 27721601 27721641 41 ATCAGCTGATGAAAGGTCTGGGACAGAAACCTCTTTACACC ATCAGCTGATGAAAGGTCTAGGACAGAAACCTCTTTACACC < 41bp 0.509538408889255 0.720280190116962 NA NA prediction 0.421483562455414 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27721621 chr2:27721620 synonymous SNV . 0 20 hm7G_associated_SNPs_28672 0 0 0 0 2 GCKR chr2:27721591 3'AG 27721591 Downstream 30bp 26143 chr2 27721620 27721620 1 + G A LUSC 27721621 + 27721601 27721641 41 ATCAGCTGATGAAAGGTCTGGGACAGAAACCTCTTTACACC ATCAGCTGATGAAAGGTCTAGGACAGAAACCTCTTTACACC < 41bp 0.509538408889255 0.720280190116962 NA NA prediction 0.421483562455414 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27721621 chr2:27721620 synonymous SNV . 0 20 hm7G_associated_SNPs_28672 0 0 0 0 2 GCKR chr2:27721664 5'GT 27721664 Upstream 45bp 26144 chr2 241979577 241979577 1 + C T rs114600580 241979578 + 241979558 241979598 41 CGGTGTGTGTGTGCCAGGCCGGATACACCGGAGCAGCCTGC CGGTGTGTGTGTGCCAGGCTGGATACACCGGAGCAGCCTGC < 41bp 0.527490542809338 0.738229235332051 NA NA prediction 0.421477385045427 Functional Gain - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241979578 chr2:241979577 synonymous SNV . 0 20 hm7G_associated_SNPs_28674 0 0 0 0 2 SNED1 chr2:241979492 3'AG 241979492 Downstream 86bp 26145 chr2 241979577 241979577 1 + C T rs114600580 241979578 + 241979558 241979598 41 CGGTGTGTGTGTGCCAGGCCGGATACACCGGAGCAGCCTGC CGGTGTGTGTGTGCCAGGCTGGATACACCGGAGCAGCCTGC < 41bp 0.527490542809338 0.738229235332051 NA NA prediction 0.421477385045427 Functional Gain - SNED1 ENSG00000162804 CDS Human protein_coding chr2:241979578 chr2:241979577 synonymous SNV . 0 20 hm7G_associated_SNPs_28674 0 0 0 0 2 SNED1 chr2:241979605 5'GT 241979605 Upstream 29bp 26146 chr15 81221423 81221423 1 + C T rs76271429 81221424 + 81221404 81221444 41 AGAACAGCTTGTTTGTTGGCGAGAGTGGCAACGTGGGGACG AGAACAGCTTGTTTGTTGGTGAGAGTGGCAACGTGGGGACG < 41bp 0.504929203629331 0.715665331755533 NA NA prediction 0.421472256252403 Functional Gain - CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221424 chr15:81221423 synonymous SNV . 0 20 hm7G_associated_SNPs_28675 0 0 1 0 2 CEMIP chr15:81221360 3'AG 81221360 Downstream 64bp 26147 chr15 81221423 81221423 1 + C T rs76271429 81221424 + 81221404 81221444 41 AGAACAGCTTGTTTGTTGGCGAGAGTGGCAACGTGGGGACG AGAACAGCTTGTTTGTTGGTGAGAGTGGCAACGTGGGGACG < 41bp 0.504929203629331 0.715665331755533 NA NA prediction 0.421472256252403 Functional Gain - CEMIP ENSG00000103888 CDS Human protein_coding chr15:81221424 chr15:81221423 synonymous SNV . 0 20 hm7G_associated_SNPs_28675 0 0 1 0 2 CEMIP chr15:81221515 5'GT 81221515 Upstream 93bp 26148 chr10 43615116 43615116 1 + C T PAAD 43615117 + 43615097 43615137 41 CCTGGACCACCCGGATGAGCGGGCCCTCACCATGGGCGACC CCTGGACCACCCGGATGAGTGGGCCCTCACCATGGGCGACC < 41bp 0.50736083274327 0.71809473855002 NA NA prediction 0.421467811613501 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43615117 chr10:43615116 nonsynonymous SNV 0.552 5 20 hm7G_associated_SNPs_28677 2 0 0 0 1 RET chr10:43615193 5'GT 43615193 Upstream 78bp 26149 chr17 39974436 39974436 1 + C T SARC 39974437 + 39974417 39974457 41 GCAGGTGAGCACATTGCTGCGCCCGCCCCACTGCCCCCGCA GCAGGTGAGCACATTGCTGTGCCCGCCCCACTGCCCCCGCA < 41bp 0.521970448255924 0.732703004135814 NA NA prediction 0.421465111759781 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974437 chr17:39974436 nonsynonymous SNV 0.137 2 20 hm7G_associated_SNPs_28678 0 0 1 0 2 FKBP10 chr17:39974341 3'AG 39974341 Downstream 96bp 26150 chr17 39974436 39974436 1 + C T SARC 39974437 + 39974417 39974457 41 GCAGGTGAGCACATTGCTGCGCCCGCCCCACTGCCCCCGCA GCAGGTGAGCACATTGCTGTGCCCGCCCCACTGCCCCCGCA < 41bp 0.521970448255924 0.732703004135814 NA NA prediction 0.421465111759781 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974437 chr17:39974436 nonsynonymous SNV 0.137 2 20 hm7G_associated_SNPs_28678 0 0 1 0 2 FKBP10 chr17:39974530 5'GT 39974530 Upstream 95bp 26151 chr11 128634703 128634703 1 + G A SKCM 128634704 + 128634684 128634724 41 AATGGAGGGAGGACTGGCAGGCGAGCGGGCGAGGTATGGCT AATGGAGGGAGGACTGGCAAGCGAGCGGGCGAGGTATGGCT < 41bp 0.48706557149731 0.710720885399823 NA NA prediction 0.421441770799645 Functional Gain - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128634704 chr11:128634703 nonsynonymous SNV 0.270 1 20 hm7G_associated_SNPs_28681 0 0 0 0 1 FLI1 chr11:128634716 5'GT 128634716 Upstream 14bp 26152 chr19 16988397 16988397 1 + C T GBM 16988398 + 16988378 16988418 41 AGTATGTGGGGACCGAGGGCGCGTCCAGCTCGCCCACTGAG AGTATGTGGGGACCGAGGGTGCGTCCAGCTCGCCCACTGAG < 41bp 0.495227665917732 0.710719695631534 NA NA prediction 0.421439391263067 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16988398 chr19:16988397 synonymous SNV . 0 20 hm7G_associated_SNPs_28682 0 0 1 0 2 SIN3B chr19:16988356 3'AG 16988356 Downstream 42bp 26153 chr19 16988397 16988397 1 + C T GBM 16988398 + 16988378 16988418 41 AGTATGTGGGGACCGAGGGCGCGTCCAGCTCGCCCACTGAG AGTATGTGGGGACCGAGGGTGCGTCCAGCTCGCCCACTGAG < 41bp 0.495227665917732 0.710719695631534 NA NA prediction 0.421439391263067 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16988398 chr19:16988397 synonymous SNV . 0 20 hm7G_associated_SNPs_28682 0 0 1 0 2 SIN3B chr19:16988450 5'GT 16988450 Upstream 54bp 26154 chr1 154316450 154316450 1 + C T GBM 154316451 + 154316431 154316471 41 CTACGAGGAGTGGGCTGAGCGACGCCTCCAGGCCAGCCTGG CTACGAGGAGTGGGCTGAGTGACGCCTCCAGGCCAGCCTGG < 41bp 0.524773212342172 0.735492760284426 NA NA prediction 0.421439095884509 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154316451 chr1:154316450 stopgain 0.001 1 20 hm7G_associated_SNPs_28683 0 0 1 0 2 ATP8B2 chr1:154316369 3'AG 154316369 Downstream 82bp 26155 chr1 154316450 154316450 1 + C T GBM 154316451 + 154316431 154316471 41 CTACGAGGAGTGGGCTGAGCGACGCCTCCAGGCCAGCCTGG CTACGAGGAGTGGGCTGAGTGACGCCTCCAGGCCAGCCTGG < 41bp 0.524773212342172 0.735492760284426 NA NA prediction 0.421439095884509 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154316451 chr1:154316450 stopgain 0.001 1 20 hm7G_associated_SNPs_28683 0 0 1 0 2 ATP8B2 chr1:154316533 5'GT 154316533 Upstream 84bp 26156 chr9 139243213 139243213 1 + G T LUSC 139243214 + 139243194 139243234 41 ACCTGCTGAGACTCCCCCTGGAGCGGGTGAGCCAGGGACAC ACCTGCTGAGACTCCCCCTTGAGCGGGTGAGCCAGGGACAC < 41bp 0.36238087331203 0.710716921905371 NA NA prediction 0.421433843810742 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139243214 chr9:139243213 synonymous SNV . 0 20 hm7G_associated_SNPs_28684 0 0 1 0 2 GPSM1 chr9:139243149 3'AG 139243149 Downstream 65bp 26157 chr9 139243213 139243213 1 + G T LUSC 139243214 + 139243194 139243234 41 ACCTGCTGAGACTCCCCCTGGAGCGGGTGAGCCAGGGACAC ACCTGCTGAGACTCCCCCTTGAGCGGGTGAGCCAGGGACAC < 41bp 0.36238087331203 0.710716921905371 NA NA prediction 0.421433843810742 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139243214 chr9:139243213 synonymous SNV . 0 20 hm7G_associated_SNPs_28684 0 0 1 0 2 GPSM1 chr9:139243219 5'GT 139243219 Upstream 7bp 26158 chr22 45130909 45130909 1 + G A SKCM 45130910 + 45130890 45130930 41 GCCCCACTCTCCTGCAGGGGGTACATGAGTCCAGGGGCGTG GCCCCACTCTCCTGCAGGGAGTACATGAGTCCAGGGGCGTG < 41bp 0.493518752810819 0.710714520396792 NA NA prediction 0.421429040793585 Functional Gain - PRR5 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45130910 chr22:45130909 synonymous SNV . 0 20 hm7G_associated_SNPs_28685 0 0 1 0 1 PRR5 chr22:45130907 3'AG 45130907 Downstream 3bp 26159 chr9 116353656 116353656 1 + G T HNSC 116353657 + 116353637 116353677 41 GATGATGACGAAGCCTCCCGGAAGAGAAAGAGCAAAAACCT GATGATGACGAAGCCTCCCTGAAGAGAAAGAGCAAAAACCT < 41bp 0.386894198038481 0.710714494201504 NA NA prediction 0.421428988403007 Functional Gain - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116353657 chr9:116353656 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_28686 0 0 0 0 2 RGS3 chr9:116353613 3'AG 116353613 Downstream 44bp 26160 chr9 116353656 116353656 1 + G T HNSC 116353657 + 116353637 116353677 41 GATGATGACGAAGCCTCCCGGAAGAGAAAGAGCAAAAACCT GATGATGACGAAGCCTCCCTGAAGAGAAAGAGCAAAAACCT < 41bp 0.386894198038481 0.710714494201504 NA NA prediction 0.421428988403007 Functional Gain - RGS3 ENSG00000138835 CDS Human protein_coding chr9:116353657 chr9:116353656 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_28686 0 0 0 0 2 RGS3 chr9:116353677 5'GT 116353677 Upstream 22bp 26161 chr19 54444845 54444845 1 + C T COAD 54444846 + 54444826 54444866 41 GGTGGTCTTTTGCCTTCGCCGCTTCCTCCTTCCTACTCAAA GGTGGTCTTTTGCCTTCGCTGCTTCCTCCTTCCTACTCAAA < 41bp 0.52115746027575 0.731867229694252 NA NA prediction 0.421419538837004 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54444846 chr19:54444845 synonymous SNV . 0 20 hm7G_associated_SNPs_28687 0 0 0 0 1 CACNG7 chr19:54444869 5'GT 54444869 Upstream 25bp 26162 chr17 7406444 7406444 1 + C T CESC 7406445 + 7406425 7406465 41 CCCTTGCACTTCCAGGTTCCGCTTTGATTATACCAATGAGA CCCTTGCACTTCCAGGTTCTGCTTTGATTATACCAATGAGA < 41bp 0.495721002439778 0.710697442169464 NA NA prediction 0.421394884338929 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7406445 chr17:7406444 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_28693 0 0 1 0 1 POLR2A chr17:7406440 3'AG 7406440 Downstream 5bp 26163 chr16 15771720 15771720 1 + C T LUAD 15771721 + 15771701 15771741 41 CAGCCTTGGAGGATGACCTCGCGCAGACCAAAGCCATTAAA CAGCCTTGGAGGATGACCTTGCGCAGACCAAAGCCATTAAA < 41bp 0.547855235965011 0.758551949116294 NA NA prediction 0.421393426302567 Functional Gain - NDE1 ENSG00000072864 CDS Human protein_coding chr16:15771721 chr16:15771720 synonymous SNV . 0 20 hm7G_associated_SNPs_28694 0 0 1 0 2 NDE1 chr16:15771658 3'AG 15771658 Downstream 63bp 26164 chr16 15771720 15771720 1 + C T LUAD 15771721 + 15771701 15771741 41 CAGCCTTGGAGGATGACCTCGCGCAGACCAAAGCCATTAAA CAGCCTTGGAGGATGACCTTGCGCAGACCAAAGCCATTAAA < 41bp 0.547855235965011 0.758551949116294 NA NA prediction 0.421393426302567 Functional Gain - NDE1 ENSG00000072864 CDS Human protein_coding chr16:15771721 chr16:15771720 synonymous SNV . 0 20 hm7G_associated_SNPs_28694 0 0 1 0 2 NDE1 chr16:15771806 5'GT 15771806 Upstream 87bp 26165 chr11 60535120 60535120 1 + G A CESC 60535121 + 60535101 60535141 41 CGGCGTCCCCTTCTGGGGAGGAGCCTGCGTGAGTGCCGGGG CGGCGTCCCCTTCTGGGGAAGAGCCTGCGTGAGTGCCGGGG < 41bp 0.522753816147642 0.733446778207938 NA NA prediction 0.421385924120593 Functional Gain - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60535121 chr11:60535120 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28697 0 0 0 0 2 MS4A15 chr11:60535040 3'AG 60535040 Downstream 81bp 26166 chr11 60535120 60535120 1 + G A CESC 60535121 + 60535101 60535141 41 CGGCGTCCCCTTCTGGGGAGGAGCCTGCGTGAGTGCCGGGG CGGCGTCCCCTTCTGGGGAAGAGCCTGCGTGAGTGCCGGGG < 41bp 0.522753816147642 0.733446778207938 NA NA prediction 0.421385924120593 Functional Gain - MS4A15 ENSG00000166961 CDS Human protein_coding chr11:60535121 chr11:60535120 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28697 0 0 0 0 2 MS4A15 chr11:60535128 5'GT 60535128 Upstream 9bp 26167 chr1 154962719 154962719 1 + G T UCEC 154962720 + 154962700 154962740 41 AGCTGGAACAGTTTCTACAGGACACTATCAAGAGGTACTAG AGCTGGAACAGTTTCTACATGACACTATCAAGAGGTACTAG < 41bp 0.682570379845507 0.893258715165781 NA NA prediction 0.421376670640549 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962720 chr1:154962719 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_28700 0 0 1 0 2 FLAD1 chr1:154962635 3'AG 154962635 Downstream 85bp 26168 chr1 154962719 154962719 1 + G T UCEC 154962720 + 154962700 154962740 41 AGCTGGAACAGTTTCTACAGGACACTATCAAGAGGTACTAG AGCTGGAACAGTTTCTACATGACACTATCAAGAGGTACTAG < 41bp 0.682570379845507 0.893258715165781 NA NA prediction 0.421376670640549 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154962720 chr1:154962719 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_28700 0 0 1 0 2 FLAD1 chr1:154962733 5'GT 154962733 Upstream 15bp 26169 chr15 75310760 75310760 1 + G A CESC 75310761 + 75310741 75310781 41 ACTGGCCTCTTCCTGCAGCGGCTGGATTGCTACCATCTCCT ACTGGCCTCTTCCTGCAGCAGCTGGATTGCTACCATCTCCT < 41bp 0.545260025779421 0.755947464115716 NA NA prediction 0.42137487667259 Functional Gain - SCAMP5 ENSG00000198794 CDS Human protein_coding chr15:75310761 chr15:75310760 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_28701 0 0 0 0 2 SCAMP5 chr15:75310735 3'AG 75310735 Downstream 26bp 26170 chr15 75310760 75310760 1 + G A CESC 75310761 + 75310741 75310781 41 ACTGGCCTCTTCCTGCAGCGGCTGGATTGCTACCATCTCCT ACTGGCCTCTTCCTGCAGCAGCTGGATTGCTACCATCTCCT < 41bp 0.545260025779421 0.755947464115716 NA NA prediction 0.42137487667259 Functional Gain - SCAMP5 ENSG00000198794 CDS Human protein_coding chr15:75310761 chr15:75310760 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_28701 0 0 0 0 2 SCAMP5 chr15:75310759 3'AG 75310759 Downstream 2bp 26171 chr21 48068521 48068521 1 + G T LUSC 48068522 + 48068502 48068542 41 TTCTGTGCACACTATGCGCGGCCTAGAGCGGTGAGTGGGGT TTCTGTGCACACTATGCGCTGCCTAGAGCGGTGAGTGGGGT < 41bp 0.695674145431057 0.906358088374848 NA NA prediction 0.421367885887582 Functional Gain - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48068522 chr21:48068521 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_28704 0 0 1 0 1 PRMT2 chr21:48068531 5'GT 48068531 Upstream 11bp 26172 chr19 7570920 7570920 1 + G A SKCM 7570921 + 7570901 7570941 41 CAGAGTCATGTGACCCTAGGGGAGCCAAAGCTACTCAAACG CAGAGTCATGTGACCCTAGAGGAGCCAAAGCTACTCAAACG < 41bp 0.489986959712026 0.710683785079562 NA NA prediction 0.421367570159124 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7570921 chr19:7570920 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_28705 0 0 0 0 1 TEX45 chr19:7570850 3'AG 7570850 Downstream 71bp 26173 chr1 26090443 26090443 1 + G A COAD 26090444 + 26090424 26090464 41 CTTCCTCAGCCCAGTGAGTGGGAACTGGGTGCAACGTGAGT CTTCCTCAGCCCAGTGAGTAGGAACTGGGTGCAACGTGAGT < 41bp 0.52370408859738 0.734387833244306 NA NA prediction 0.421367489293851 Functional Gain - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26090444 chr1:26090443 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_28706 0 0 0 0 2 MAN1C1 chr1:26090365 3'AG 26090365 Downstream 79bp 26174 chr1 26090443 26090443 1 + G A COAD 26090444 + 26090424 26090464 41 CTTCCTCAGCCCAGTGAGTGGGAACTGGGTGCAACGTGAGT CTTCCTCAGCCCAGTGAGTAGGAACTGGGTGCAACGTGAGT < 41bp 0.52370408859738 0.734387833244306 NA NA prediction 0.421367489293851 Functional Gain - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26090444 chr1:26090443 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_28706 0 0 0 0 2 MAN1C1 chr1:26090458 5'GT 26090458 Upstream 16bp 26175 chr7 24325009 24325009 1 + G A rs5573 24325010 + 24324990 24325030 41 ACATGGCCAGATACTACTCGGCGCTGCGACACTACATCAAC ACATGGCCAGATACTACTCAGCGCTGCGACACTACATCAAC < 41bp 0.490273682184787 0.710683676425892 NA NA prediction 0.421367352851785 Functional Gain - NPY ENSG00000122585 CDS Human protein_coding chr7:24325010 chr7:24325009 synonymous SNV . 0 20 hm7G_associated_SNPs_28707 0 0 0 0 1 NPY chr7:24325047 5'GT 24325047 Upstream 39bp 26176 chr20 48431610 48431610 1 + C T COAD 48431611 + 48431591 48431631 41 ACCACCCTGGTTGTCACGACGAAACTGGTGCTCCCGACCCC ACCACCCTGGTTGTCACGATGAAACTGGTGCTCCCGACCCC < 41bp 0.517468694297926 0.728147533451082 NA NA prediction 0.421357678306312 Functional Gain - SLC9A8 ENSG00000197818 CDS Human protein_coding chr20:48431611 chr20:48431610 nonsynonymous SNV 0.657 4 20 hm7G_associated_SNPs_28709 0 0 1 0 1 SLC9A8 chr20:48431545 3'AG 48431545 Downstream 66bp 26177 chr11 65631160 65631160 1 + G A UCEC 65631161 + 65631141 65631181 41 CACGTTGGAGATTTTGTGTGGGTGGCCCAGGAGACCAATCC CACGTTGGAGATTTTGTGTAGGTGGCCCAGGAGACCAATCC < 41bp 0.546543278242282 0.757210623985989 NA NA prediction 0.421334691487413 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631161 chr11:65631160 stopgain 0.996 1 20 hm7G_associated_SNPs_28715 0 0 1 0 2 MUS81 chr11:65631071 3'AG 65631071 Downstream 90bp 26178 chr11 65631160 65631160 1 + G A UCEC 65631161 + 65631141 65631181 41 CACGTTGGAGATTTTGTGTGGGTGGCCCAGGAGACCAATCC CACGTTGGAGATTTTGTGTAGGTGGCCCAGGAGACCAATCC < 41bp 0.546543278242282 0.757210623985989 NA NA prediction 0.421334691487413 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65631161 chr11:65631160 stopgain 0.996 1 20 hm7G_associated_SNPs_28715 0 0 1 0 2 MUS81 chr11:65631192 5'GT 65631192 Upstream 33bp 26179 chr22 41747575 41747575 1 + C T SKCM 41747576 + 41747556 41747596 41 CCTCCCCAGGCATGACCCACGAAGACATCGTTCAGGAGTCT CCTCCCCAGGCATGACCCATGAAGACATCGTTCAGGAGTCT < 41bp 0.506845293988387 0.717511165524555 NA NA prediction 0.421331743072336 Functional Gain - ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41747576 chr22:41747575 synonymous SNV . 0 20 hm7G_associated_SNPs_28716 0 0 1 0 2 ZC3H7B chr22:41747565 3'AG 41747565 Downstream 11bp 26180 chr22 41747575 41747575 1 + C T SKCM 41747576 + 41747556 41747596 41 CCTCCCCAGGCATGACCCACGAAGACATCGTTCAGGAGTCT CCTCCCCAGGCATGACCCATGAAGACATCGTTCAGGAGTCT < 41bp 0.506845293988387 0.717511165524555 NA NA prediction 0.421331743072336 Functional Gain - ZC3H7B ENSG00000100403 CDS Human protein_coding chr22:41747576 chr22:41747575 synonymous SNV . 0 20 hm7G_associated_SNPs_28716 0 0 1 0 2 ZC3H7B chr22:41747650 5'GT 41747650 Upstream 76bp 26181 chr17 1656056 1656056 1 + G A UCEC 1656057 + 1656037 1656077 41 TGTATCTGAAACACCAAATGGACCTGGTGGCCACCCTCAGC TGTATCTGAAACACCAAATAGACCTGGTGGCCACCCTCAGC < 41bp 0.507228365629172 0.717892790304747 NA NA prediction 0.42132884935115 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1656057 chr17:1656056 nonsynonymous SNV 0.897 1 20 hm7G_associated_SNPs_28717 0 0 1 0 1 SERPINF2 chr17:1656084 5'GT 1656084 Upstream 29bp 26182 chr6 43100373 43100373 1 + C T rs56004029 43100374 + 43100354 43100394 41 CTGGTGTCTACACCTGCCACGCGGCCAACCTGGCTGGTCAG CTGGTGTCTACACCTGCCATGCGGCCAACCTGGCTGGTCAG < 41bp 0.518916828290468 0.729579649178143 NA NA prediction 0.42132564177535 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43100374 chr6:43100373 synonymous SNV . 0 20 hm7G_associated_SNPs_28719 0 0 1 0 1 PTK7 chr6:43100425 5'GT 43100425 Upstream 53bp 26183 chr19 36365448 36365448 1 + G A BLCA 36365449 + 36365429 36365469 41 TCTGGAGGAGCAGGTGTCTGGTGAGCGACAGCGCCTGGTGG TCTGGAGGAGCAGGTGTCTAGTGAGCGACAGCGCCTGGTGG < 41bp 0.542440824021954 0.753096489690833 NA NA prediction 0.421311331337759 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36365449 chr19:36365448 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_28724 0 0 0 0 1 APLP1 chr19:36365406 3'AG 36365406 Downstream 43bp 26184 chr19 36109528 36109528 1 + C T COAD 36109529 + 36109509 36109549 41 GAGCACCCTCCTGAAGGAGCGGCAAGTCTTGACCCAGCGCC GAGCACCCTCCTGAAGGAGTGGCAAGTCTTGACCCAGCGCC < 41bp 0.513732531416025 0.724387689499729 NA NA prediction 0.421310316167409 Functional Gain - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36109529 chr19:36109528 nonsynonymous SNV 0.099 0 20 hm7G_associated_SNPs_28725 0 0 1 0 2 HAUS5 chr19:36109471 3'AG 36109471 Downstream 58bp 26185 chr19 36109528 36109528 1 + C T COAD 36109529 + 36109509 36109549 41 GAGCACCCTCCTGAAGGAGCGGCAAGTCTTGACCCAGCGCC GAGCACCCTCCTGAAGGAGTGGCAAGTCTTGACCCAGCGCC < 41bp 0.513732531416025 0.724387689499729 NA NA prediction 0.421310316167409 Functional Gain - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36109529 chr19:36109528 nonsynonymous SNV 0.099 0 20 hm7G_associated_SNPs_28725 0 0 1 0 2 HAUS5 chr19:36109601 5'GT 36109601 Upstream 74bp 26186 chr1 25810727 25810727 1 + G A LAML 25810728 + 25810708 25810748 41 GAGGGATCCGCTCAGAAATGGGCCAGCTTCGGCAGGAGAAC GAGGGATCCGCTCAGAAATAGGCCAGCTTCGGCAGGAGAAC < 41bp 0.502513895058259 0.713167868955654 NA NA prediction 0.42130794779479 Functional Gain - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25810728 chr1:25810727 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_28726 0 0 0 0 1 TMEM57 chr1:25810765 5'GT 25810765 Upstream 39bp 26187 chr19 14031667 14031667 1 + C T UCEC 14031668 + 14031648 14031688 41 GGGTGCCAAGATGCACCTGCGCCAAGCCAAGGGACTGGAGC GGGTGCCAAGATGCACCTGTGCCAAGCCAAGGGACTGGAGC < 41bp 0.503560271850644 0.714213039836979 NA NA prediction 0.42130553597267 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14031668 chr19:14031667 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_28727 0 0 1 0 1 CC2D1A chr19:14031735 5'GT 14031735 Upstream 69bp 26188 chr17 31323938 31323938 1 + G A PRAD 31323939 + 31323919 31323959 41 TGATGGGAGCACCAACAACGGGATCTTCCAGATCAACAGCC TGATGGGAGCACCAACAACAGGATCTTCCAGATCAACAGCC < 41bp 0.491792809218207 0.710651775666005 NA NA prediction 0.421303551332009 Functional Gain - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31323939 chr17:31323938 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_28728 0 0 0 0 3 SPACA3 chr17:31323839 3'AG 31323839 Downstream 100bp 26189 chr17 31323938 31323938 1 + G A PRAD 31323939 + 31323919 31323959 41 TGATGGGAGCACCAACAACGGGATCTTCCAGATCAACAGCC TGATGGGAGCACCAACAACAGGATCTTCCAGATCAACAGCC < 41bp 0.491792809218207 0.710651775666005 NA NA prediction 0.421303551332009 Functional Gain - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31323939 chr17:31323938 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_28728 0 0 0 0 3 SPACA3 chr17:31323861 3'AG 31323861 Downstream 78bp 26190 chr17 31323938 31323938 1 + G A PRAD 31323939 + 31323919 31323959 41 TGATGGGAGCACCAACAACGGGATCTTCCAGATCAACAGCC TGATGGGAGCACCAACAACAGGATCTTCCAGATCAACAGCC < 41bp 0.491792809218207 0.710651775666005 NA NA prediction 0.421303551332009 Functional Gain - SPACA3 ENSG00000141316 CDS Human protein_coding chr17:31323939 chr17:31323938 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_28728 0 0 0 0 3 SPACA3 chr17:31324019 5'GT 31324019 Upstream 82bp 26191 chr1 78560770 78560770 1 + G T LUSC 78560771 + 78560751 78560791 41 AGTTAAAGGAATTAAAAAAGGAGGAACTCTTTACTATGAAG AGTTAAAGGAATTAAAAAATGAGGAACTCTTTACTATGAAG < 41bp 0.38819176215484 0.710650599175005 NA NA prediction 0.421301198350009 Functional Gain - GIPC2 ENSG00000137960 CDS Human protein_coding chr1:78560771 chr1:78560770 nonsynonymous SNV 0.151 3 20 hm7G_associated_SNPs_28729 0 0 0 0 1 GIPC2 chr1:78560816 5'GT 78560816 Upstream 47bp 26192 chr17 26861448 26861448 1 + G A SKCM 26861449 + 26861429 26861469 41 AGGAAGTTCCTCCCGCAAGGGCTGCCTGTGGGCCCTCAATC AGGAAGTTCCTCCCGCAAGAGCTGCCTGTGGGCCCTCAATC < 41bp 0.531324539887159 0.741970926955658 NA NA prediction 0.421292774136997 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26861449 chr17:26861448 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28731 0 0 0 0 1 FOXN1 chr17:26861349 3'AG 26861349 Downstream 100bp 26193 chr3 154802094 154802094 1 + C T UCEC 154802095 + 154802075 154802115 41 TCATAGCTGTGACAATGATCGCACTCTATGCAACCTACGAT TCATAGCTGTGACAATGATTGCACTCTATGCAACCTACGAT < 41bp 0.501289019008838 0.711932808566752 NA NA prediction 0.421287579115827 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154802095 chr3:154802094 synonymous SNV . 0 20 hm7G_associated_SNPs_28733 0 0 0 0 1 MME chr3:154802116 5'GT 154802116 Upstream 23bp 26194 chr2 220498062 220498062 1 + G A rs144770147 220498063 + 220498043 220498083 41 CGAGCTCCAGCATGAACTCGGTTCTGGGGAATCATCACCCA CGAGCTCCAGCATGAACTCAGTTCTGGGGAATCATCACCCA < 41bp 0.538105288826175 0.74873758363914 NA NA prediction 0.42126458962593 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220498063 chr2:220498062 synonymous SNV . 0 20 hm7G_associated_SNPs_28736 0 0 0 0 1 SLC4A3 chr2:220497996 3'AG 220497996 Downstream 67bp 26195 chr1 44437971 44437971 1 + G A UCEC 44437972 + 44437952 44437992 41 AGCTTGGCTCTGACCCCACGGCCCCAGCTGGAGCTGGCTGA AGCTTGGCTCTGACCCCACAGCCCCAGCTGGAGCTGGCTGA < 41bp 0.521161693609872 0.731792654322491 NA NA prediction 0.42126192142524 Functional Gain - DPH2 ENSG00000132768 CDS Human protein_coding chr1:44437972 chr1:44437971 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_28737 0 0 1 0 1 DPH2 chr1:44438006 5'GT 44438006 Upstream 36bp 26196 chr7 141736023 141736023 1 + C T SARC 141736024 + 141736004 141736044 41 CCCTGAGGAGCTCTGTAGGCGGTGGATGCAGTTGGGTGCAT CCCTGAGGAGCTCTGTAGGTGGTGGATGCAGTTGGGTGCAT < 41bp 0.524776987112488 0.735403760030621 NA NA prediction 0.421253545836266 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141736024 chr7:141736023 nonsynonymous SNV 0.948 5 20 hm7G_associated_SNPs_28739 0 0 0 0 2 MGAM chr7:141735969 3'AG 141735969 Downstream 55bp 26197 chr7 141736023 141736023 1 + C T SARC 141736024 + 141736004 141736044 41 CCCTGAGGAGCTCTGTAGGCGGTGGATGCAGTTGGGTGCAT CCCTGAGGAGCTCTGTAGGTGGTGGATGCAGTTGGGTGCAT < 41bp 0.524776987112488 0.735403760030621 NA NA prediction 0.421253545836266 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141736024 chr7:141736023 nonsynonymous SNV 0.948 5 20 hm7G_associated_SNPs_28739 0 0 0 0 2 MGAM chr7:141736085 5'GT 141736085 Upstream 63bp 26198 chr6 43107207 43107207 1 + C T OV 43107208 + 43107188 43107228 41 GAGTTTGACAAGGAGGCCACGGTGCCCTGTTCAGCCACAGG GAGTTTGACAAGGAGGCCATGGTGCCCTGTTCAGCCACAGG < 41bp 0.516284648574232 0.726909997313661 NA NA prediction 0.421250697478859 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43107208 chr6:43107207 nonsynonymous SNV 0.749 4 20 hm7G_associated_SNPs_28740 0 0 1 0 2 PTK7 chr6:43107144 3'AG 43107144 Downstream 64bp 26199 chr6 43107207 43107207 1 + C T OV 43107208 + 43107188 43107228 41 GAGTTTGACAAGGAGGCCACGGTGCCCTGTTCAGCCACAGG GAGTTTGACAAGGAGGCCATGGTGCCCTGTTCAGCCACAGG < 41bp 0.516284648574232 0.726909997313661 NA NA prediction 0.421250697478859 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43107208 chr6:43107207 nonsynonymous SNV 0.749 4 20 hm7G_associated_SNPs_28740 0 0 1 0 2 PTK7 chr6:43107263 5'GT 43107263 Upstream 57bp 26200 chr9 125140732 125140732 1 + C T rs181947887 125140733 + 125140713 125140753 41 TGGCCTGTGGACCTGGCTCCGGAATTCACTGCGGCCCAGCC TGGCCTGTGGACCTGGCTCTGGAATTCACTGCGGCCCAGCC < 41bp 0.531455574388084 0.742080783473751 NA NA prediction 0.421250418171334 Functional Gain - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125140733 chr9:125140732 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_28741 0 0 1 0 1 PTGS1 chr9:125140712 3'AG 125140712 Downstream 21bp 26201 chr12 126137027 126137027 1 + C T BRCA 126137028 + 126137008 126137048 41 TCCATCCTGGCTGAGAAGACGGTGATTGTCCTGGATGACCG TCCATCCTGGCTGAGAAGATGGTGATTGTCCTGGATGACCG < 41bp 0.512641656240082 0.723264159686346 NA NA prediction 0.421245006892527 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126137028 chr12:126137027 nonsynonymous SNV 0.683 4 20 hm7G_associated_SNPs_28743 0 0 0 0 1 TMEM132B chr12:126136987 3'AG 126136987 Downstream 41bp 26202 chr6 52957324 52957324 1 + C T UCEC 52957325 + 52957305 52957345 41 GAGAGAGATGTTTTTAGAACGGCCTCGTGTTCGGTTTGATG GAGAGAGATGTTTTTAGAATGGCCTCGTGTTCGGTTTGATG < 41bp 0.502356215895195 0.712969477891427 NA NA prediction 0.421226523992465 Functional Gain - FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52957325 chr6:52957324 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_28745 0 0 1 0 2 FBXO9 chr6:52957227 3'AG 52957227 Downstream 98bp 26203 chr6 52957324 52957324 1 + C T UCEC 52957325 + 52957305 52957345 41 GAGAGAGATGTTTTTAGAACGGCCTCGTGTTCGGTTTGATG GAGAGAGATGTTTTTAGAATGGCCTCGTGTTCGGTTTGATG < 41bp 0.502356215895195 0.712969477891427 NA NA prediction 0.421226523992465 Functional Gain - FBXO9 ENSG00000112146 CDS Human protein_coding chr6:52957325 chr6:52957324 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_28745 0 0 1 0 2 FBXO9 chr6:52957345 5'GT 52957345 Upstream 22bp 26204 chrX 128692911 128692911 1 + C T UCEC 128692912 + 128692892 128692932 41 AAATACCCAATCTGGGCAGCGGGAGGGTCTCATCAAACATA AAATACCCAATCTGGGCAGTGGGAGGGTCTCATCAAACATA < 41bp 0.501220936919688 0.71183407664487 NA NA prediction 0.421226279450363 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128692912 chrX:128692911 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_28746 0 0 1 0 2 OCRL chrX:128692817 3'AG 128692817 Downstream 95bp 26205 chrX 128692911 128692911 1 + C T UCEC 128692912 + 128692892 128692932 41 AAATACCCAATCTGGGCAGCGGGAGGGTCTCATCAAACATA AAATACCCAATCTGGGCAGTGGGAGGGTCTCATCAAACATA < 41bp 0.501220936919688 0.71183407664487 NA NA prediction 0.421226279450363 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128692912 chrX:128692911 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_28746 0 0 1 0 2 OCRL chrX:128692978 5'GT 128692978 Upstream 68bp 26206 chr2 109400076 109400076 1 + G T LUSC 109400077 + 109400057 109400097 41 AGATATCACCAAACATGATGGAACAGGCGGACAGTCCATTT AGATATCACCAAACATGATTGAACAGGCGGACAGTCCATTT < 41bp 0.416395746820919 0.710609301459063 NA NA prediction 0.421218602918125 Functional Gain - RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109400077 chr2:109400076 stopgain 0.997 0 20 hm7G_associated_SNPs_28748 0 0 1 0 1 RANBP2 chr2:109400052 3'AG 109400052 Downstream 25bp 26207 chr6 43188277 43188277 1 + C T UCEC 43188278 + 43188258 43188298 41 GCCCCATTGCCGACTGCCCCGCCCAGCCCACCGGAGCCTTC GCCCCATTGCCGACTGCCCTGCCCAGCCCACCGGAGCCTTC < 41bp 0.51082937693727 0.721438582926228 NA NA prediction 0.421218411977915 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188278 chr6:43188277 synonymous SNV . 0 20 hm7G_associated_SNPs_28749 0 0 0 0 2 CUL9 chr6:43188197 3'AG 43188197 Downstream 81bp 26208 chr6 43188277 43188277 1 + C T UCEC 43188278 + 43188258 43188298 41 GCCCCATTGCCGACTGCCCCGCCCAGCCCACCGGAGCCTTC GCCCCATTGCCGACTGCCCTGCCCAGCCCACCGGAGCCTTC < 41bp 0.51082937693727 0.721438582926228 NA NA prediction 0.421218411977915 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43188278 chr6:43188277 synonymous SNV . 0 20 hm7G_associated_SNPs_28749 0 0 0 0 2 CUL9 chr6:43188337 5'GT 43188337 Upstream 61bp 26209 chr14 24535653 24535653 1 + G T LUSC 24535654 + 24535634 24535674 41 ACCCAGGCCTGGCAGAAACGGCGCTCTTCAGACGACGCAGG ACCCAGGCCTGGCAGAAACTGCGCTCTTCAGACGACGCAGG < 41bp 0.360217303323151 0.710603973787935 NA NA prediction 0.421207947575871 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24535654 chr14:24535653 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28751 0 0 0 0 2 CARMIL3 chr14:24535607 3'AG 24535607 Downstream 47bp 26210 chr14 24535653 24535653 1 + G T LUSC 24535654 + 24535634 24535674 41 ACCCAGGCCTGGCAGAAACGGCGCTCTTCAGACGACGCAGG ACCCAGGCCTGGCAGAAACTGCGCTCTTCAGACGACGCAGG < 41bp 0.360217303323151 0.710603973787935 NA NA prediction 0.421207947575871 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24535654 chr14:24535653 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28751 0 0 0 0 2 CARMIL3 chr14:24535673 5'GT 24535673 Upstream 21bp 26211 chr10 71119753 71119753 1 + C T SKCM 71119754 + 71119734 71119774 41 AGAATGTTCACATGGAGTCCGAGGTTTATGACACCCCAGAG AGAATGTTCACATGGAGTCTGAGGTTTATGACACCCCAGAG < 41bp 0.513254312178641 0.723856525226666 NA NA prediction 0.421204426096049 Functional Gain - HK1 ENSG00000156515 CDS Human protein_coding chr10:71119754 chr10:71119753 synonymous SNV . 0 20 hm7G_associated_SNPs_28752 0 0 1 0 1 HK1 chr10:71119801 5'GT 71119801 Upstream 49bp 26212 chr1 184446658 184446658 1 + C T BLCA 184446659 + 184446639 184446679 41 AGACTATGGGCTGTGCCTCCGCCAAGCATGTTGCCACTGTT AGACTATGGGCTGTGCCTCTGCCAAGCATGTTGCCACTGTT < 41bp 0.502325984080612 0.712926308985757 NA NA prediction 0.42120064981029 Functional Gain - C1orf21 ENSG00000116667 CDS Human protein_coding chr1:184446659 chr1:184446658 synonymous SNV . 0 20 hm7G_associated_SNPs_28753 0 0 1 0 1 C1orf21 chr1:184446737 5'GT 184446737 Upstream 80bp 26213 chr3 52547984 52547984 1 + G T BLCA 52547985 + 52547965 52548005 41 CCTGCCTTCAGCCTCTTCCGGGAATTGCTGCAGGTACGGAA CCTGCCTTCAGCCTCTTCCTGGAATTGCTGCAGGTACGGAA < 41bp 0.366960264981421 0.71059309380271 NA NA prediction 0.42118618760542 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52547985 chr3:52547984 nonsynonymous SNV 0.843 2 20 hm7G_associated_SNPs_28755 0 0 0 0 2 STAB1 chr3:52547899 3'AG 52547899 Downstream 86bp 26214 chr3 52547984 52547984 1 + G T BLCA 52547985 + 52547965 52548005 41 CCTGCCTTCAGCCTCTTCCGGGAATTGCTGCAGGTACGGAA CCTGCCTTCAGCCTCTTCCTGGAATTGCTGCAGGTACGGAA < 41bp 0.366960264981421 0.71059309380271 NA NA prediction 0.42118618760542 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52547985 chr3:52547984 nonsynonymous SNV 0.843 2 20 hm7G_associated_SNPs_28755 0 0 0 0 2 STAB1 chr3:52547997 5'GT 52547997 Upstream 14bp 26215 chr1 160324013 160324013 1 + C T COAD 160324014 + 160323994 160324034 41 CCCACCATCTTCCCTGCAGCGATTTCTTCGAGCTCGAAACA CCCACCATCTTCCCTGCAGTGATTTCTTCGAGCTCGAAACA < 41bp 0.496825861323903 0.710592504885047 NA NA prediction 0.421185009770095 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160324014 chr1:160324013 stopgain 0.999 1 20 hm7G_associated_SNPs_28756 0 0 1 0 1 NCSTN chr1:160324080 5'GT 160324080 Upstream 68bp 26216 chr17 33325651 33325651 1 + G T COAD 33325652 + 33325632 33325672 41 GAGCCTGGGAAGCGGCACTGGCTGAAAGTGAAGAAAGACTA GAGCCTGGGAAGCGGCACTTGCTGAAAGTGAAGAAAGACTA < 41bp 0.701817889954855 0.9124080100721 NA NA prediction 0.421180240234491 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33325652 chr17:33325651 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28758 0 0 1 0 1 LIG3 chr17:33325746 5'GT 33325746 Upstream 96bp 26217 chr10 101594176 101594176 1 + C T PAAD 101594177 + 101594157 101594197 41 CACCCTGCCTCAGTCCTTGCGCAGCTGGATTACATGCTTCC CACCCTGCCTCAGTCCTTGTGCAGCTGGATTACATGCTTCC < 41bp 0.497365799957896 0.71058867569533 NA NA prediction 0.421177351390661 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101594177 chr10:101594176 nonsynonymous SNV 0.167 5 20 hm7G_associated_SNPs_28759 0 0 1 0 1 ABCC2 chr10:101594137 3'AG 101594137 Downstream 40bp 26218 chr1 156027790 156027790 1 + C T COAD 156027791 + 156027771 156027811 41 GGGCCGTGTAGCCATCACCCGAGTGGCCAACCTTCTGCTGT GGGCCGTGTAGCCATCACCTGAGTGGCCAACCTTCTGCTGT < 41bp 0.507087810930954 0.71767616952459 NA NA prediction 0.421176717187272 Functional Gain - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156027791 chr1:156027790 stopgain 0.996 1 20 hm7G_associated_SNPs_28760 0 0 1 0 2 LAMTOR2 chr1:156027769 3'AG 156027769 Downstream 22bp 26219 chr1 156027790 156027790 1 + C T COAD 156027791 + 156027771 156027811 41 GGGCCGTGTAGCCATCACCCGAGTGGCCAACCTTCTGCTGT GGGCCGTGTAGCCATCACCTGAGTGGCCAACCTTCTGCTGT < 41bp 0.507087810930954 0.71767616952459 NA NA prediction 0.421176717187272 Functional Gain - LAMTOR2 ENSG00000116586 CDS Human protein_coding chr1:156027791 chr1:156027790 stopgain 0.996 1 20 hm7G_associated_SNPs_28760 0 0 1 0 2 LAMTOR2 chr1:156027858 5'GT 156027858 Upstream 69bp 26220 chr1 158061309 158061309 1 + C T rs143492342 158061310 + 158061290 158061330 41 GCACCGCCTGGAACAGCTTCGGGCCAGGCACAGCCATCATC GCACCGCCTGGAACAGCTTTGGGCCAGGCACAGCCATCATC < 41bp 0.525433244881046 0.736021403110644 NA NA prediction 0.421176316459198 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158061310 chr1:158061309 synonymous SNV . 0 20 hm7G_associated_SNPs_28761 0 0 1 0 1 KIRREL chr1:158061346 5'GT 158061346 Upstream 38bp 26221 chr2 159488387 159488387 1 + C T SKCM 159488388 + 159488368 159488408 41 CTATTACAGCCCAGTGTACCGCAGCCCAAACCATGGAACTG CTATTACAGCCCAGTGTACTGCAGCCCAAACCATGGAACTG < 41bp 0.514796512726025 0.725381511254878 NA NA prediction 0.421169997057707 Functional Gain - PKP4 ENSG00000144283 CDS Human protein_coding chr2:159488388 chr2:159488387 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_28762 0 0 1 0 1 PKP4 chr2:159488453 5'GT 159488453 Upstream 67bp 26222 chr6 148855005 148855005 1 + C T STAD 148855006 + 148854986 148855026 41 TCAAGTTCATCTACGTGGACGTGCTCAGTGAAGACGAGGAG TCAAGTTCATCTACGTGGATGTGCTCAGTGAAGACGAGGAG < 41bp 0.507904234719926 0.718486975740795 NA NA prediction 0.421165482041739 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148855006 chr6:148855005 synonymous SNV . 0 20 hm7G_associated_SNPs_28764 0 0 1 0 1 SASH1 chr6:148854907 3'AG 148854907 Downstream 99bp 26223 chr22 25315880 25315880 1 + C T UCEC 25315881 + 25315861 25315901 41 CACTACGTCCTGTTCATTGCGCTGGCTCTGGTGGAAGTCTA CACTACGTCCTGTTCATTGTGCTGGCTCTGGTGGAAGTCTA < 41bp 0.515991060967345 0.726571798901458 NA NA prediction 0.421161475868226 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25315881 chr22:25315880 nonsynonymous SNV 0.745 4 20 hm7G_associated_SNPs_28765 0 0 0 0 2 SGSM1 chr22:25315793 3'AG 25315793 Downstream 88bp 26224 chr22 25315880 25315880 1 + C T UCEC 25315881 + 25315861 25315901 41 CACTACGTCCTGTTCATTGCGCTGGCTCTGGTGGAAGTCTA CACTACGTCCTGTTCATTGTGCTGGCTCTGGTGGAAGTCTA < 41bp 0.515991060967345 0.726571798901458 NA NA prediction 0.421161475868226 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25315881 chr22:25315880 nonsynonymous SNV 0.745 4 20 hm7G_associated_SNPs_28765 0 0 0 0 2 SGSM1 chr22:25315960 5'GT 25315960 Upstream 81bp 26225 chr13 26828866 26828866 1 + G T BLCA 26828867 + 26828847 26828887 41 GGGCTGCAAAGTTGGCCGAGGCACTTATGGTCACGTCTACA GGGCTGCAAAGTTGGCCGATGCACTTATGGTCACGTCTACA < 41bp 0.690812329702154 0.901391192136576 NA NA prediction 0.421157724868844 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26828867 chr13:26828866 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_28766 0 0 1 0 1 CDK8 chr13:26828906 5'GT 26828906 Upstream 41bp 26226 chr8 37601926 37601926 1 + C T UCEC 37601927 + 37601907 37601947 41 GTGGTGAACTTCCTGGTCCCGAACGCAGGTACGTCTTAACA GTGGTGAACTTCCTGGTCCTGAACGCAGGTACGTCTTAACA < 41bp 0.512398208353944 0.722972158644455 NA NA prediction 0.421147900581021 Functional Gain - ERLIN2 ENSG00000147475 CDS Human protein_coding chr8:37601927 chr8:37601926 nonsynonymous SNV 0.952 3 20 hm7G_associated_SNPs_28769 0 0 1 0 2 ERLIN2 chr8:37601873 3'AG 37601873 Downstream 54bp 26227 chr8 37601926 37601926 1 + C T UCEC 37601927 + 37601907 37601947 41 GTGGTGAACTTCCTGGTCCCGAACGCAGGTACGTCTTAACA GTGGTGAACTTCCTGGTCCTGAACGCAGGTACGTCTTAACA < 41bp 0.512398208353944 0.722972158644455 NA NA prediction 0.421147900581021 Functional Gain - ERLIN2 ENSG00000147475 CDS Human protein_coding chr8:37601927 chr8:37601926 nonsynonymous SNV 0.952 3 20 hm7G_associated_SNPs_28769 0 0 1 0 2 ERLIN2 chr8:37601934 5'GT 37601934 Upstream 9bp 26228 chr7 128452803 128452803 1 + G A BLCA 128452804 + 128452784 128452824 41 AAGTGCTGATCAAGCTGCAGGCGGTGCAGGCCATGTACCAG AAGTGCTGATCAAGCTGCAAGCGGTGCAGGCCATGTACCAG < 41bp 0.516738346618195 0.727307515929203 NA NA prediction 0.421138338622015 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128452804 chr7:128452803 synonymous SNV . 0 20 hm7G_associated_SNPs_28770 0 0 0 0 1 CCDC136 chr7:128452762 3'AG 128452762 Downstream 42bp 26229 chr3 36527681 36527681 1 + G A OV 36527682 + 36527662 36527702 41 TCCGCTTCGGCACCTCCCTGGCCCAGAGGACAAAGAAGGGC TCCGCTTCGGCACCTCCCTAGCCCAGAGGACAAAGAAGGGC < 41bp 0.518645874325025 0.729209646920874 NA NA prediction 0.421127545191698 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36527682 chr3:36527681 synonymous SNV . 0 20 hm7G_associated_SNPs_28771 0 0 0 0 2 STAC chr3:36527626 3'AG 36527626 Downstream 56bp 26230 chr3 36527681 36527681 1 + G A OV 36527682 + 36527662 36527702 41 TCCGCTTCGGCACCTCCCTGGCCCAGAGGACAAAGAAGGGC TCCGCTTCGGCACCTCCCTAGCCCAGAGGACAAAGAAGGGC < 41bp 0.518645874325025 0.729209646920874 NA NA prediction 0.421127545191698 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36527682 chr3:36527681 synonymous SNV . 0 20 hm7G_associated_SNPs_28771 0 0 0 0 2 STAC chr3:36527741 5'GT 36527741 Upstream 61bp 26231 chr11 64972320 64972320 1 + G A rs374582196 64972321 + 64972301 64972341 41 TGGAGACTATTGGCTTCGCGGTCTACGAGGTCAGGAGGGTG TGGAGACTATTGGCTTCGCAGTCTACGAGGTCAGGAGGGTG < 41bp 0.511726376325281 0.72228143091959 NA NA prediction 0.421110109188618 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64972321 chr11:64972320 synonymous SNV . 0 20 hm7G_associated_SNPs_28772 0 0 1 0 1 CAPN1 chr11:64972329 5'GT 64972329 Upstream 10bp 26232 chr8 54852226 54852226 1 + G A rs548213612 54852227 + 54852207 54852247 41 CCCAGGCCAGCCCGGAGCGGGGAGTCGCGGGTCCAACGCAT CCCAGGCCAGCCCGGAGCGAGGAGTCGCGGGTCCAACGCAT < 41bp 0.482511841000856 0.710551371740146 NA NA prediction 0.421102743480293 Functional Gain - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54852227 chr8:54852226 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_28775 0 0 0 0 2 RGS20 chr8:54852136 3'AG 54852136 Downstream 91bp 26233 chr8 54852226 54852226 1 + G A rs548213612 54852227 + 54852207 54852247 41 CCCAGGCCAGCCCGGAGCGGGGAGTCGCGGGTCCAACGCAT CCCAGGCCAGCCCGGAGCGAGGAGTCGCGGGTCCAACGCAT < 41bp 0.482511841000856 0.710551371740146 NA NA prediction 0.421102743480293 Functional Gain - RGS20 ENSG00000147509 CDS Human protein_coding chr8:54852227 chr8:54852226 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_28775 0 0 0 0 2 RGS20 chr8:54852284 5'GT 54852284 Upstream 59bp 26234 chr16 29845167 29845167 1 + C T COAD 29845168 + 29845148 29845188 41 CAGGAGATGAGTGGCTTTTCGAGGGACCTGGTAAGTTCTGT CAGGAGATGAGTGGCTTTTTGAGGGACCTGGTAAGTTCTGT < 41bp 0.509395603134242 0.719942504520054 NA NA prediction 0.421093802771623 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29845168 chr16:29845167 synonymous SNV . 0 20 hm7G_associated_SNPs_28778 0 0 0 0 1 MVP chr16:29845177 5'GT 29845177 Upstream 11bp 26235 chr20 45358044 45358044 1 + C T SKCM 45358045 + 45358025 45358065 41 ACGGACTGACCGCTGTCCTCGGCCTGGGCTTCATCTATTTA ACGGACTGACCGCTGTCCTTGGCCTGGGCTTCATCTATTTA < 41bp 0.504249809098562 0.714795790721151 NA NA prediction 0.421091963245178 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45358045 chr20:45358044 synonymous SNV . 0 20 hm7G_associated_SNPs_28779 2 0 1 0 2 SLC2A10 chr20:45357992 3'AG 45357992 Downstream 53bp 26236 chr20 45358044 45358044 1 + C T SKCM 45358045 + 45358025 45358065 41 ACGGACTGACCGCTGTCCTCGGCCTGGGCTTCATCTATTTA ACGGACTGACCGCTGTCCTTGGCCTGGGCTTCATCTATTTA < 41bp 0.504249809098562 0.714795790721151 NA NA prediction 0.421091963245178 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45358045 chr20:45358044 synonymous SNV . 0 20 hm7G_associated_SNPs_28779 2 0 1 0 2 SLC2A10 chr20:45358127 5'GT 45358127 Upstream 84bp 26237 chr8 144130635 144130635 1 + G A HNSC 144130636 + 144130616 144130656 41 GTCATTGCAGGATTCTCTCGGCACCACGGGAACCACCTTCT GTCATTGCAGGATTCTCTCAGCACCACGGGAACCACCTTCT < 41bp 0.504957394359381 0.715499245372246 NA NA prediction 0.42108370202573 Functional Gain - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144130636 chr8:144130635 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28780 0 0 0 0 2 C8orf31 chr8:144130626 3'AG 144130626 Downstream 10bp 26238 chr8 144130635 144130635 1 + G A HNSC 144130636 + 144130616 144130656 41 GTCATTGCAGGATTCTCTCGGCACCACGGGAACCACCTTCT GTCATTGCAGGATTCTCTCAGCACCACGGGAACCACCTTCT < 41bp 0.504957394359381 0.715499245372246 NA NA prediction 0.42108370202573 Functional Gain - C8orf31 ENSG00000177335 CDS Human processed_transcript chr8:144130636 chr8:144130635 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28780 0 0 0 0 2 C8orf31 chr8:144130715 5'GT 144130715 Upstream 81bp 26239 chr6 116783563 116783563 1 + G A ACC 116783564 + 116783544 116783584 41 CGCTGGTGCCGTGCAACCAGGCCAAGGCGTCGGACGTGCAG CGCTGGTGCCGTGCAACCAAGCCAAGGCGTCGGACGTGCAG < 41bp 0.479012441692079 0.710541515525711 NA NA prediction 0.421083031051421 Functional Gain - FAM26F ENSG00000188820 CDS Human protein_coding chr6:116783564 chr6:116783563 synonymous SNV . 0 20 hm7G_associated_SNPs_28781 0 0 0 0 1 FAM26F chr6:116783617 5'GT 116783617 Upstream 55bp 26240 chr15 81201506 81201506 1 + G T SKCM 81201507 + 81201487 81201527 41 ATATGGGACAGCAGCTGGTGGGTCAGTACCCGATTCACTTC ATATGGGACAGCAGCTGGTTGGTCAGTACCCGATTCACTTC < 41bp 0.353972329481722 0.710536824350103 NA NA prediction 0.421073648700206 Functional Gain - CEMIP ENSG00000103888 CDS Human protein_coding chr15:81201507 chr15:81201506 synonymous SNV . 0 20 hm7G_associated_SNPs_28783 0 0 1 0 1 CEMIP chr15:81201438 3'AG 81201438 Downstream 69bp 26241 chr1 15708525 15708525 1 + C T COAD 15708526 + 15708506 15708546 41 TCTCTCCTGTGCACCCAGGCGGAGCAAAGTGTCCATTGAGA TCTCTCCTGTGCACCCAGGTGGAGCAAAGTGTCCATTGAGA < 41bp 0.503555297510324 0.714089283867451 NA NA prediction 0.421067972714255 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15708526 chr1:15708525 nonsynonymous SNV 0.975 2 20 hm7G_associated_SNPs_28784 0 0 0 0 1 FHAD1 chr1:15708524 3'AG 15708524 Downstream 2bp 26242 chr7 893178 893178 1 + C T UCEC 893179 + 893159 893199 41 GCTACAGAAGCTGCAGGCTCGGGTGGACCAGATGGAAGGCG GCTACAGAAGCTGCAGGCTTGGGTGGACCAGATGGAAGGCG < 41bp 0.505621260131311 0.716154737978855 NA NA prediction 0.421066955695089 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:893179 chr7:893178 nonsynonymous SNV 0.180 2 20 hm7G_associated_SNPs_28785 0 0 1 0 2 SUN1 chr7:893222 5'GT 893222 Upstream 45bp 26243 chr7 893178 893178 1 + C T UCEC 893179 + 893159 893199 41 GCTACAGAAGCTGCAGGCTCGGGTGGACCAGATGGAAGGCG GCTACAGAAGCTGCAGGCTTGGGTGGACCAGATGGAAGGCG < 41bp 0.505621260131311 0.716154737978855 NA NA prediction 0.421066955695089 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:893179 chr7:893178 nonsynonymous SNV 0.180 2 20 hm7G_associated_SNPs_28785 0 0 1 0 2 SUN1 chr7:893255 5'GT 893255 Upstream 78bp 26244 chr17 72350663 72350663 1 + C T rs61746578 72350664 + 72350644 72350684 41 GGAGGCAAAGAGAAGGAAGCGGAGGTCCCGATCCTTCGAGG GGAGGCAAAGAGAAGGAAGTGGAGGTCCCGATCCTTCGAGG < 41bp 0.501533077817198 0.712065749078185 NA NA prediction 0.421065342521973 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72350664 chr17:72350663 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_28786 0 0 0 0 1 KIF19 chr17:72350698 5'GT 72350698 Upstream 36bp 26245 chr7 152497716 152497716 1 + C T COAD 152497717 + 152497697 152497737 41 TCATAGGAGATGAAGCCATCGATAAACCTACATATGCTACA TCATAGGAGATGAAGCCATTGATAAACCTACATATGCTACA < 41bp 0.525591270592996 0.736122954987981 NA NA prediction 0.421063368789971 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152497717 chr7:152497716 synonymous SNV . 0 20 hm7G_associated_SNPs_28787 0 0 0 0 1 ACTR3B chr7:152497740 5'GT 152497740 Upstream 25bp 26246 chr22 40366925 40366925 1 + G A CESC 40366926 + 40366906 40366946 41 CAGCGAGTGCGGTGGGCCCGGGCGCTGTATGACTTTGAGGC CAGCGAGTGCGGTGGGCCCAGGCGCTGTATGACTTTGAGGC < 41bp 0.518299453032374 0.728829818964098 NA NA prediction 0.421060731863447 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40366926 chr22:40366925 nonsynonymous SNV 0.897 0 20 hm7G_associated_SNPs_28788 0 0 0 0 1 GRAP2 chr22:40366909 3'AG 40366909 Downstream 17bp 26247 chr22 25024085 25024085 1 + G A BLCA 25024086 + 25024066 25024106 41 CCATGTGCCCGACGATCATGGTGGGCCAGGACGGCCAGGTC CCATGTGCCCGACGATCATAGTGGGCCAGGACGGCCAGGTC < 41bp 0.490412962051939 0.71052603088742 NA NA prediction 0.42105206177484 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25024086 chr22:25024085 nonsynonymous SNV 0.034 0 20 hm7G_associated_SNPs_28789 0 0 0 0 1 GGT1 chr22:25024048 3'AG 25024048 Downstream 38bp 26248 chr19 16982110 16982110 1 + C T BLCA 16982111 + 16982091 16982131 41 GCCTGCTGGAGGGCAGCATCGACCCCACGCAGTACGAGGAC GCCTGCTGGAGGGCAGCATTGACCCCACGCAGTACGAGGAC < 41bp 0.502851248056469 0.713376891893821 NA NA prediction 0.421051287674703 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16982111 chr19:16982110 synonymous SNV . 0 20 hm7G_associated_SNPs_28790 0 0 1 0 2 SIN3B chr19:16982040 3'AG 16982040 Downstream 71bp 26249 chr19 16982110 16982110 1 + C T BLCA 16982111 + 16982091 16982131 41 GCCTGCTGGAGGGCAGCATCGACCCCACGCAGTACGAGGAC GCCTGCTGGAGGGCAGCATTGACCCCACGCAGTACGAGGAC < 41bp 0.502851248056469 0.713376891893821 NA NA prediction 0.421051287674703 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16982111 chr19:16982110 synonymous SNV . 0 20 hm7G_associated_SNPs_28790 0 0 1 0 2 SIN3B chr19:16982209 5'GT 16982209 Upstream 100bp 26250 chr2 220466427 220466427 1 + G T LUAD 220466428 + 220466408 220466448 41 TTCCCCTTCAAATCCCTTCGGCACCTGGAGGTATGGGGACA TTCCCCTTCAAATCCCTTCTGCACCTGGAGGTATGGGGACA < 41bp 0.70080355114547 0.911327947365173 NA NA prediction 0.421048792439406 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220466428 chr2:220466427 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_28791 0 0 1 0 2 STK11IP chr2:220466363 3'AG 220466363 Downstream 65bp 26251 chr2 220466427 220466427 1 + G T LUAD 220466428 + 220466408 220466448 41 TTCCCCTTCAAATCCCTTCGGCACCTGGAGGTATGGGGACA TTCCCCTTCAAATCCCTTCTGCACCTGGAGGTATGGGGACA < 41bp 0.70080355114547 0.911327947365173 NA NA prediction 0.421048792439406 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220466428 chr2:220466427 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_28791 0 0 1 0 2 STK11IP chr2:220466437 5'GT 220466437 Upstream 11bp 26252 chr3 36526481 36526481 1 + C T UCEC 36526482 + 36526462 36526502 41 TCTCCAGCCAAAGGGGTTTCGGCGTTACTACAGCTCCCCCT TCTCCAGCCAAAGGGGTTTTGGCGTTACTACAGCTCCCCCT < 41bp 0.519357624717588 0.729876400724048 NA NA prediction 0.421037552012919 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36526482 chr3:36526481 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_28793 0 0 0 0 2 STAC chr3:36526469 3'AG 36526469 Downstream 13bp 26253 chr3 36526481 36526481 1 + C T UCEC 36526482 + 36526462 36526502 41 TCTCCAGCCAAAGGGGTTTCGGCGTTACTACAGCTCCCCCT TCTCCAGCCAAAGGGGTTTTGGCGTTACTACAGCTCCCCCT < 41bp 0.519357624717588 0.729876400724048 NA NA prediction 0.421037552012919 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36526482 chr3:36526481 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_28793 0 0 0 0 2 STAC chr3:36526550 5'GT 36526550 Upstream 70bp 26254 chr16 16130348 16130348 1 + C T CESC 16130349 + 16130329 16130369 41 GTTGATTGTCCGGGGCTACCGCCAGCCCCTGGAGGGCAGTG GTTGATTGTCCGGGGCTACTGCCAGCCCCTGGAGGGCAGTG < 41bp 0.518426186394704 0.728943741251156 NA NA prediction 0.421035109712902 Functional Gain - ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16130349 chr16:16130348 nonsynonymous SNV 0.948 4 20 hm7G_associated_SNPs_28794 0 0 1 0 1 ABCC1 chr16:16130329 3'AG 16130329 Downstream 20bp 26255 chr20 2795993 2795993 1 + G A UCEC 2795994 + 2795974 2796014 41 GGACAGTGTCCTATGGCTGGGGGCACTAGGACTGACAATCC GGACAGTGTCCTATGGCTGAGGGCACTAGGACTGACAATCC < 41bp 0.537215109538127 0.747730632043044 NA NA prediction 0.421031045009833 Functional Gain - C20orf141 ENSG00000198326;ENSG00000241690;ENSG00000258713 CDS Human other chr20:2795994 chr20:2795993 nonsynonymous SNV 0.925 4 20 hm7G_associated_SNPs_28795 0 0 0 0 1 C20orf141 chr20:2796090 5'GT 2796090 Upstream 98bp 26256 chr9 34489417 34489417 1 + C T COAD 34489418 + 34489398 34489438 41 AGACTCAGATGAAGGACGGCGGCAGCATTACCGCGATGAAT AGACTCAGATGAAGGACGGTGGCAGCATTACCGCGATGAAT < 41bp 0.496740311660233 0.710514130313102 NA NA prediction 0.421028260626204 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34489418 chr9:34489417 nonsynonymous SNV 0.372 4 20 hm7G_associated_SNPs_28797 0 0 0 0 2 DNAI1 chr9:34489321 3'AG 34489321 Downstream 97bp 26257 chr9 34489417 34489417 1 + C T COAD 34489418 + 34489398 34489438 41 AGACTCAGATGAAGGACGGCGGCAGCATTACCGCGATGAAT AGACTCAGATGAAGGACGGTGGCAGCATTACCGCGATGAAT < 41bp 0.496740311660233 0.710514130313102 NA NA prediction 0.421028260626204 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34489418 chr9:34489417 nonsynonymous SNV 0.372 4 20 hm7G_associated_SNPs_28797 0 0 0 0 2 DNAI1 chr9:34489447 5'GT 34489447 Upstream 31bp 26258 chr3 32915402 32915402 1 + G A SKCM 32915403 + 32915383 32915423 41 ACAGCTTCATCTACCTCCAGGAGGCACTGCAGGACTCACGG ACAGCTTCATCTACCTCCAAGAGGCACTGCAGGACTCACGG < 41bp 0.528081460244791 0.738595209315287 NA NA prediction 0.421027498140992 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32915403 chr3:32915402 synonymous SNV . 0 20 hm7G_associated_SNPs_28798 0 0 0 0 2 TRIM71 chr3:32915310 3'AG 32915310 Downstream 93bp 26259 chr3 32915402 32915402 1 + G A SKCM 32915403 + 32915383 32915423 41 ACAGCTTCATCTACCTCCAGGAGGCACTGCAGGACTCACGG ACAGCTTCATCTACCTCCAAGAGGCACTGCAGGACTCACGG < 41bp 0.528081460244791 0.738595209315287 NA NA prediction 0.421027498140992 Functional Gain - TRIM71 ENSG00000206557 CDS Human protein_coding chr3:32915403 chr3:32915402 synonymous SNV . 0 20 hm7G_associated_SNPs_28798 0 0 0 0 2 TRIM71 chr3:32915477 5'GT 32915477 Upstream 76bp 26260 chr3 184294719 184294719 1 + C T PRAD 184294720 + 184294700 184294740 41 GCCCCGGGACCTGGGTGGCCGGGATGACCTCCTGTACAATG GCCCCGGGACCTGGGTGGCTGGGATGACCTCCTGTACAATG < 41bp 0.512429249701723 0.722942609348799 NA NA prediction 0.421026719294153 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184294720 chr3:184294719 nonsynonymous SNV 0.919 4 20 hm7G_associated_SNPs_28799 0 0 0 0 1 EPHB3 chr3:184294630 3'AG 184294630 Downstream 90bp 26261 chr14 24633866 24633866 1 + G A LUSC 24633867 + 24633847 24633887 41 TCTACAACGGGCGCGTGGTGGGCGAGGCCCAGGTGCAAAGC TCTACAACGGGCGCGTGGTAGGCGAGGCCCAGGTGCAAAGC < 41bp 0.5452254957329 0.755737840868901 NA NA prediction 0.421024690272003 Functional Gain - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24633867 chr14:24633866 synonymous SNV . 0 20 hm7G_associated_SNPs_28800 0 0 1 0 1 IRF9 chr14:24633823 3'AG 24633823 Downstream 44bp 26262 chr2 220110800 220110800 1 + G T LUSC 220110801 + 220110781 220110821 41 CCTCTTCATCCAGAAACTGGGGGAGGGGTGAGTGTTTGGAA CCTCTTCATCCAGAAACTGTGGGAGGGGTGAGTGTTTGGAA < 41bp 0.690880300087283 0.90138518671564 NA NA prediction 0.421009773256714 Functional Gain - STK16 ENSG00000115661 CDS Human protein_coding chr2:220110801 chr2:220110800 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28801 0 0 1 0 1 STK16 chr2:220110807 5'GT 220110807 Upstream 8bp 26263 chr1 50659453 50659453 1 + C T HNSC 50659454 + 50659434 50659474 41 TAGGTCTCATATGCCCGTCCGAGCTCTGCCTCAATCAGGGA TAGGTCTCATATGCCCGTCTGAGCTCTGCCTCAATCAGGGA < 41bp 0.501353484313634 0.711857126616068 NA NA prediction 0.421007284604868 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50659454 chr1:50659453 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_28802 0 0 0 0 1 ELAVL4 chr1:50659437 3'AG 50659437 Downstream 17bp 26264 chr3 160150238 160150238 1 + G T STAD 160150239 + 160150219 160150259 41 ATTACCAAATGCTTACTTTGGGAGGGGACGCCGAACTCGAG ATTACCAAATGCTTACTTTTGGAGGGGACGCCGAACTCGAG < 41bp 0.685200621138201 0.895702660199731 NA NA prediction 0.42100407812306 Functional Gain - SMC4 ENSG00000113810 CDS Human protein_coding chr3:160150239 chr3:160150238 nonsynonymous SNV 0.966 4 20 hm7G_associated_SNPs_28804 0 0 1 0 1 SMC4 chr3:160150303 5'GT 160150303 Upstream 66bp 26265 chr19 48339521 48339521 1 + G A SARC 48339522 + 48339502 48339542 41 GCCCCCAGGAAGCAGCGGCGGGAGCGCACCACCTTCACCCG GCCCCCAGGAAGCAGCGGCAGGAGCGCACCACCTTCACCCG < 41bp 0.565494554916178 0.775995021272513 NA NA prediction 0.421000932712672 Functional Gain - CRX ENSG00000105392 CDS Human protein_coding chr19:48339522 chr19:48339521 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_28805 2 0 0 0 1 CRX chr19:48339500 3'AG 48339500 Downstream 22bp 26266 chr8 69031710 69031710 1 + G T STAD 69031711 + 69031691 69031731 41 GCATATCTCATGATAAACAGGACAAGATACATAGTTGCCTT GCATATCTCATGATAAACATGACAAGATACATAGTTGCCTT < 41bp 0.380638000868456 0.710492125331006 NA NA prediction 0.420984250662012 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69031711 chr8:69031710 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28806 0 0 0 0 2 PREX2 chr8:69031667 3'AG 69031667 Downstream 44bp 26267 chr8 69031710 69031710 1 + G T STAD 69031711 + 69031691 69031731 41 GCATATCTCATGATAAACAGGACAAGATACATAGTTGCCTT GCATATCTCATGATAAACATGACAAGATACATAGTTGCCTT < 41bp 0.380638000868456 0.710492125331006 NA NA prediction 0.420984250662012 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69031711 chr8:69031710 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28806 0 0 0 0 2 PREX2 chr8:69031749 5'GT 69031749 Upstream 40bp 26268 chr19 34838845 34838845 1 + G A COAD 34838846 + 34838826 34838866 41 CAGGCGATGCAGCAGAAGCGGCAGGCCCAGCACGGTCGCCG CAGGCGATGCAGCAGAAGCAGCAGGCCCAGCACGGTCGCCG < 41bp 0.516394545042596 0.726880208976702 NA NA prediction 0.420971327868212 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34838846 chr19:34838845 nonsynonymous SNV 0.767 4 20 hm7G_associated_SNPs_28807 0 0 1 0 1 KIAA0355 chr19:34838782 3'AG 34838782 Downstream 64bp 26269 chrX 69669655 69669655 1 + C T LGG 69669656 + 69669636 69669676 41 GCGATTGGTGGTGCGGAGGCGACAGCCTCCACCCGAGACCA GCGATTGGTGGTGCGGAGGTGACAGCCTCCACCCGAGACCA < 41bp 0.512076325703499 0.722559964797205 NA NA prediction 0.420967278187412 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69669656 chrX:69669655 stopgain 0.998 1 20 hm7G_associated_SNPs_28809 0 0 0 0 1 DLG3 chrX:69669709 5'GT 69669709 Upstream 55bp 26270 chr19 54395880 54395880 1 + G A UCEC 54395881 + 54395861 54395901 41 GCGTCTCGGAGCTGCTCAAGGCGCCCGTGGATGGCTGGTGA GCGTCTCGGAGCTGCTCAAAGCGCCCGTGGATGGCTGGTGA < 41bp 0.561713065652792 0.772196373115702 NA NA prediction 0.42096661492582 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54395881 chr19:54395880 synonymous SNV . 0 20 hm7G_associated_SNPs_28811 0 0 0 0 1 PRKCG chr19:54395897 5'GT 54395897 Upstream 18bp 26271 chr19 7533745 7533745 1 + G A COAD 7533746 + 7533726 7533766 41 CACCCTCCCAGCTTCAACGGGGAAGGGCTGGAGGGCCCTCG CACCCTCCCAGCTTCAACGAGGAAGGGCTGGAGGGCCCTCG < 41bp 0.566050913090302 0.776533475481358 NA NA prediction 0.420965124782112 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7533746 chr19:7533745 nonsynonymous SNV 0.960 4 20 hm7G_associated_SNPs_28812 0 0 0 0 1 ARHGEF18 chr19:7533711 3'AG 7533711 Downstream 35bp 26272 chr9 131151578 131151578 1 + G A BLCA 131151579 + 131151559 131151599 41 CTGATTAACGATGCCGACTGGGAGCTACTGGTCAGTACCTT CTGATTAACGATGCCGACTAGGAGCTACTGGTCAGTACCTT < 41bp 0.504686957905198 0.715168799555743 NA NA prediction 0.420963683301089 Functional Gain - URM1 ENSG00000167118 CDS Human protein_coding chr9:131151579 chr9:131151578 stopgain 1.000 1 20 hm7G_associated_SNPs_28813 0 0 1 2 2 URM1 chr9:131151540 3'AG 131151540 Downstream 39bp 26273 chr9 131151578 131151578 1 + G A BLCA 131151579 + 131151559 131151599 41 CTGATTAACGATGCCGACTGGGAGCTACTGGTCAGTACCTT CTGATTAACGATGCCGACTAGGAGCTACTGGTCAGTACCTT < 41bp 0.504686957905198 0.715168799555743 NA NA prediction 0.420963683301089 Functional Gain - URM1 ENSG00000167118 CDS Human protein_coding chr9:131151579 chr9:131151578 stopgain 1.000 1 20 hm7G_associated_SNPs_28813 0 0 1 2 2 URM1 chr9:131151588 5'GT 131151588 Upstream 11bp 26274 chr7 92158152 92158152 1 + G T LUAD 92158153 + 92158133 92158173 41 GTCGAGCGGCGGGGAGCTAGGGAGTTTATTTGATCACCACG GTCGAGCGGCGGGGAGCTATGGAGTTTATTTGATCACCACG < 41bp 0.683423552717717 0.893903905629757 NA NA prediction 0.420960705824081 Functional Gain - RBM48 ENSG00000127993 CDS Human protein_coding chr7:92158153 chr7:92158152 nonsynonymous SNV 0.005 4 20 hm7G_associated_SNPs_28814 0 0 0 0 1 RBM48 chr7:92158238 5'GT 92158238 Upstream 87bp 26275 chr14 103148259 103148259 1 + G T LIHC 103148260 + 103148240 103148280 41 GCAAGACGCAGTCAAGAACGGGACAATCTTGGCATGTTGGT GCAAGACGCAGTCAAGAACTGGACAATCTTGGCATGTTGGT < 41bp 0.696210866086047 0.906691200930738 NA NA prediction 0.420960669689383 Functional Gain - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103148260 chr14:103148259 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_28815 0 0 1 0 1 RCOR1 chr14:103148232 3'AG 103148232 Downstream 28bp 26276 chr1 104078803 104078803 1 + C T UCEC 104078804 + 104078784 104078824 41 CCTTTTGGACCAATTACTGCGCGACCTCCCATGGTAAGAAA CCTTTTGGACCAATTACTGTGCGACCTCCCATGGTAAGAAA < 41bp 0.507420979500995 0.717899325071624 NA NA prediction 0.420956691141257 Functional Gain - RNPC3 ENSG00000185946 CDS Human protein_coding chr1:104078804 chr1:104078803 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_28816 0 0 1 0 1 RNPC3 chr1:104078816 5'GT 104078816 Upstream 14bp 26277 chr1 109807154 109807154 1 + G A KIRP 109807155 + 109807135 109807175 41 GAGCATCAACGTGGAGCAAGGCTGTAGCCTGCCTGACCCTT GAGCATCAACGTGGAGCAAAGCTGTAGCCTGCCTGACCCTT < 41bp 0.504922635974881 0.715397487583989 NA NA prediction 0.420949703218216 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109807155 chr1:109807154 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28817 0 0 1 0 1 CELSR2 chr1:109807250 5'GT 109807250 Upstream 97bp 26278 chrX 118708873 118708873 1 + G T LUAD 118708874 + 118708854 118708894 41 CTTCCCGAAGGTTGCAGGAGGATCCTCCAGCCGGAGTCAGC CTTCCCGAAGGTTGCAGGATGATCCTCCAGCCGGAGTCAGC < 41bp 0.393053309161338 0.710473737397345 NA NA prediction 0.42094747479469 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708874 chrX:118708873 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_28818 0 0 1 0 2 UBE2A chrX:118708864 3'AG 118708864 Downstream 10bp 26279 chrX 118708873 118708873 1 + G T LUAD 118708874 + 118708854 118708894 41 CTTCCCGAAGGTTGCAGGAGGATCCTCCAGCCGGAGTCAGC CTTCCCGAAGGTTGCAGGATGATCCTCCAGCCGGAGTCAGC < 41bp 0.393053309161338 0.710473737397345 NA NA prediction 0.42094747479469 Functional Gain - UBE2A ENSG00000077721 CDS Human protein_coding chrX:118708874 chrX:118708873 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_28818 0 0 1 0 2 UBE2A chrX:118708944 5'GT 118708944 Upstream 72bp 26280 chr7 32612948 32612948 1 + G T THCA 32612949 + 32612929 32612969 41 ACGTCTTCCTAGATGGCACGGGCTGGGAGGGAGGTGACGAA ACGTCTTCCTAGATGGCACTGGCTGGGAGGGAGGTGACGAA < 41bp 0.691758231704708 0.902229782648392 NA NA prediction 0.420943101887369 Functional Gain - AVL9 ENSG00000105778 CDS Human protein_coding chr7:32612949 chr7:32612948 synonymous SNV . 0 20 hm7G_associated_SNPs_28820 0 0 1 0 1 AVL9 chr7:32613030 5'GT 32613030 Upstream 83bp 26281 chr11 119058010 119058010 1 + G A COAD 119058011 + 119057991 119058031 41 ATCCGGGCCAGCAGCCCTCGGGTGTTGCTGACAGTATTGGC ATCCGGGCCAGCAGCCCTCAGGTGTTGCTGACAGTATTGGC < 41bp 0.565535268725081 0.776006718741641 NA NA prediction 0.42094290003312 Functional Gain - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119058011 chr11:119058010 nonsynonymous SNV 0.882 1 20 hm7G_associated_SNPs_28821 0 0 0 0 1 PDZD3 chr11:119057979 3'AG 119057979 Downstream 32bp 26282 chr15 23444036 23444036 1 + G T LUSC 23444037 + 23444017 23444057 41 AGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCCA AGAACATCTGGACAGTGAGTGGGAGGAGGCACCTCGGCCCA < 41bp 0.402171877738299 0.710470370321263 NA NA prediction 0.420940740642525 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444037 chr15:23444036 . . 0 20 hm7G_associated_SNPs_28822 0 0 0 0 2 GOLGA8EP chr15:23444007 3'AG 23444007 Downstream 30bp 26283 chr15 23444036 23444036 1 + G T LUSC 23444037 + 23444017 23444057 41 AGAACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCCA AGAACATCTGGACAGTGAGTGGGAGGAGGCACCTCGGCCCA < 41bp 0.402171877738299 0.710470370321263 NA NA prediction 0.420940740642525 Functional Gain - GOLGA8EP ENSG00000175676 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:23444037 chr15:23444036 . . 0 20 hm7G_associated_SNPs_28822 0 0 0 0 2 GOLGA8EP chr15:23444098 5'GT 23444098 Upstream 63bp 26284 chr19 17985483 17985483 1 + G A SKCM 17985484 + 17985464 17985504 41 TTTGCATAGTGACCGGGCTGGACATCTGGGCGTCGCTCCTG TTTGCATAGTGACCGGGCTAGACATCTGGGCGTCGCTCCTG < 41bp 0.505622869281378 0.716088364406204 NA NA prediction 0.420930990249653 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985484 chr19:17985483 synonymous SNV . 0 20 hm7G_associated_SNPs_28823 0 0 0 0 2 SLC5A5 chr19:17985473 3'AG 17985473 Downstream 11bp 26285 chr19 17985483 17985483 1 + G A SKCM 17985484 + 17985464 17985504 41 TTTGCATAGTGACCGGGCTGGACATCTGGGCGTCGCTCCTG TTTGCATAGTGACCGGGCTAGACATCTGGGCGTCGCTCCTG < 41bp 0.505622869281378 0.716088364406204 NA NA prediction 0.420930990249653 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17985484 chr19:17985483 synonymous SNV . 0 20 hm7G_associated_SNPs_28823 0 0 0 0 2 SLC5A5 chr19:17985540 5'GT 17985540 Upstream 58bp 26286 chr1 17668849 17668849 1 + G A GBM 17668850 + 17668830 17668870 41 GTCTTCCGCGTGGCGCCCTGGATCATGACCCCCAACACCCA GTCTTCCGCGTGGCGCCCTAGATCATGACCCCCAACACCCA < 41bp 0.526856352016354 0.737319812743168 NA NA prediction 0.420926921453627 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668850 chr1:17668849 stopgain 1.000 1 20 hm7G_associated_SNPs_28824 0 0 0 0 2 PADI4 chr1:17668794 3'AG 17668794 Downstream 56bp 26287 chr1 17668849 17668849 1 + G A GBM 17668850 + 17668830 17668870 41 GTCTTCCGCGTGGCGCCCTGGATCATGACCCCCAACACCCA GTCTTCCGCGTGGCGCCCTAGATCATGACCCCCAACACCCA < 41bp 0.526856352016354 0.737319812743168 NA NA prediction 0.420926921453627 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668850 chr1:17668849 stopgain 1.000 1 20 hm7G_associated_SNPs_28824 0 0 0 0 2 PADI4 chr1:17668897 5'GT 17668897 Upstream 49bp 26288 chr17 54926110 54926110 1 + C T LUAD 54926111 + 54926091 54926131 41 TGCCTCTGGGAACAGGCAACGATCTATCCAATACATTGGGT TGCCTCTGGGAACAGGCAATGATCTATCCAATACATTGGGT < 41bp 0.508759235603688 0.719221228557562 NA NA prediction 0.420923985907748 Functional Gain - DGKE ENSG00000153933 CDS Human protein_coding chr17:54926111 chr17:54926110 synonymous SNV . 0 20 hm7G_associated_SNPs_28825 0 0 0 0 1 DGKE chr17:54926057 3'AG 54926057 Downstream 54bp 26289 chr9 90273032 90273032 1 + C T LGG 90273033 + 90273013 90273053 41 ATGGGAGCCAGCGTTGAGGCGCTGACCACGGTGAGTGCCCA ATGGGAGCCAGCGTTGAGGTGCTGACCACGGTGAGTGCCCA < 41bp 0.512041773135633 0.722500202626567 NA NA prediction 0.420916858981867 Functional Gain - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90273033 chr9:90273032 nonsynonymous SNV 0.931 1 20 hm7G_associated_SNPs_28828 0 0 1 0 2 DAPK1 chr9:90272944 3'AG 90272944 Downstream 89bp 26290 chr9 90273032 90273032 1 + C T LGG 90273033 + 90273013 90273053 41 ATGGGAGCCAGCGTTGAGGCGCTGACCACGGTGAGTGCCCA ATGGGAGCCAGCGTTGAGGTGCTGACCACGGTGAGTGCCCA < 41bp 0.512041773135633 0.722500202626567 NA NA prediction 0.420916858981867 Functional Gain - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90273033 chr9:90273032 nonsynonymous SNV 0.931 1 20 hm7G_associated_SNPs_28828 0 0 1 0 2 DAPK1 chr9:90273042 5'GT 90273042 Upstream 11bp 26291 chr14 104029449 104029449 1 + G A rs2274267 104029450 + 104029430 104029470 41 GCGCCGAGCGCAGGGATACGGCGCCCAGCGGGGTAAGCAGG GCGCCGAGCGCAGGGATACAGCGCCCAGCGGGGTAAGCAGG < 41bp 0.533104286876958 0.743562360780955 NA NA prediction 0.420916147807994 Functional Gain - APOPT1 ENSG00000256053;ENSG00000256500 CDS Human other chr14:104029450 chr14:104029449 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_28829 1 0 1 0 1 APOPT1 chr14:104029461 5'GT 104029461 Upstream 13bp 26292 chr11 43876369 43876369 1 + C T COAD 43876370 + 43876350 43876390 41 AGTCTGCAATTAAAACAGTCGGCCTGCAATCCCGAACCAAT AGTCTGCAATTAAAACAGTTGGCCTGCAATCCCGAACCAAT < 41bp 0.501287640916177 0.711745592043438 NA NA prediction 0.420915902254522 Functional Gain - HSD17B12 ENSG00000149084 CDS Human protein_coding chr11:43876370 chr11:43876369 synonymous SNV . 0 20 hm7G_associated_SNPs_28830 0 0 1 0 1 HSD17B12 chr11:43876414 5'GT 43876414 Upstream 46bp 26293 chr10 70987058 70987058 1 + G A SKCM 70987059 + 70987039 70987079 41 TGGAGAAGGGCCTGGCAAAGGACACCAACCCCACGGCTGCA TGGAGAAGGGCCTGGCAAAAGACACCAACCCCACGGCTGCA < 41bp 0.509094445713077 0.719550469921482 NA NA prediction 0.420912048416812 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70987059 chr10:70987058 synonymous SNV . 0 20 hm7G_associated_SNPs_28831 0 0 0 0 2 HKDC1 chr10:70986963 3'AG 70986963 Downstream 96bp 26294 chr10 70987058 70987058 1 + G A SKCM 70987059 + 70987039 70987079 41 TGGAGAAGGGCCTGGCAAAGGACACCAACCCCACGGCTGCA TGGAGAAGGGCCTGGCAAAAGACACCAACCCCACGGCTGCA < 41bp 0.509094445713077 0.719550469921482 NA NA prediction 0.420912048416812 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70987059 chr10:70987058 synonymous SNV . 0 20 hm7G_associated_SNPs_28831 0 0 0 0 2 HKDC1 chr10:70987125 5'GT 70987125 Upstream 68bp 26295 chr16 58018240 58018240 1 + G A SKCM 58018241 + 58018221 58018261 41 GCCCATTTTACACTCCTTGGGGTCCCCAACAAACCCCTGCA GCCCATTTTACACTCCTTGAGGTCCCCAACAAACCCCTGCA < 41bp 0.550813727707406 0.761268611077566 NA NA prediction 0.42090976674032 Functional Gain - TEPP ENSG00000159648 CDS Human protein_coding chr16:58018241 chr16:58018240 nonsynonymous SNV 0.480 1 20 hm7G_associated_SNPs_28832 0 0 0 0 2 TEPP chr16:58018207 3'AG 58018207 Downstream 34bp 26296 chr16 58018240 58018240 1 + G A SKCM 58018241 + 58018221 58018261 41 GCCCATTTTACACTCCTTGGGGTCCCCAACAAACCCCTGCA GCCCATTTTACACTCCTTGAGGTCCCCAACAAACCCCTGCA < 41bp 0.550813727707406 0.761268611077566 NA NA prediction 0.42090976674032 Functional Gain - TEPP ENSG00000159648 CDS Human protein_coding chr16:58018241 chr16:58018240 nonsynonymous SNV 0.480 1 20 hm7G_associated_SNPs_28832 0 0 0 0 2 TEPP chr16:58018268 5'GT 58018268 Upstream 29bp 26297 chr1 29587213 29587213 1 + C T HNSC 29587214 + 29587194 29587234 41 CCAACTCCATCATTGGCGACGGGCCGATCGTGCGCAAGGAG CCAACTCCATCATTGGCGATGGGCCGATCGTGCGCAAGGAG < 41bp 0.498973779496277 0.710454106562551 NA NA prediction 0.420908213125102 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29587214 chr1:29587213 synonymous SNV . 0 20 hm7G_associated_SNPs_28833 0 0 1 0 1 PTPRU chr1:29587122 3'AG 29587122 Downstream 92bp 26298 chr5 147763543 147763543 1 + G T rs560479371 147763544 + 147763524 147763564 41 GCCTCAGCGGTAGGGGCCGGGGAAGTGTCTGTAGCGTCCCT GCCTCAGCGGTAGGGGCCGTGGAAGTGTCTGTAGCGTCCCT < 41bp 0.378764113204063 0.710450358668221 NA NA prediction 0.420900717336441 Functional Gain - FBXO38 ENSG00000145868 UTR5 Human protein_coding chr5:147763544 chr5:147763543 . . 0 20 hm7G_associated_SNPs_28834 0 0 0 0 1 FBXO38 chr5:147763602 5'GT 147763602 Upstream 60bp 26299 chr12 54903688 54903688 1 + G T LUSC 54903689 + 54903669 54903709 41 TTGTCCGAAGAAACCAGGGGGCTGAGCAGTGGCGCAGTGCC TTGTCCGAAGAAACCAGGGTGCTGAGCAGTGGCGCAGTGCC < 41bp 0.681710732378413 0.892158865873338 NA NA prediction 0.42089626698985 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54903689 chr12:54903688 synonymous SNV . 0 20 hm7G_associated_SNPs_28835 0 0 1 0 2 NCKAP1L chr12:54903632 3'AG 54903632 Downstream 57bp 26300 chr12 54903688 54903688 1 + G T LUSC 54903689 + 54903669 54903709 41 TTGTCCGAAGAAACCAGGGGGCTGAGCAGTGGCGCAGTGCC TTGTCCGAAGAAACCAGGGTGCTGAGCAGTGGCGCAGTGCC < 41bp 0.681710732378413 0.892158865873338 NA NA prediction 0.42089626698985 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54903689 chr12:54903688 synonymous SNV . 0 20 hm7G_associated_SNPs_28835 0 0 1 0 2 NCKAP1L chr12:54903769 5'GT 54903769 Upstream 82bp 26301 chr6 4892523 4892523 1 + G T LUAD 4892524 + 4892504 4892544 41 TGCCGAGAGGGCCAGGATGGGGAGCAGGCCCAGGATACACC TGCCGAGAGGGCCAGGATGTGGAGCAGGCCCAGGATACACC < 41bp 0.366071180522723 0.710445874997753 NA NA prediction 0.420891749995505 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4892524 chr6:4892523 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28836 0 0 1 0 1 CDYL chr6:4892613 5'GT 4892613 Upstream 91bp 26302 chr14 90734747 90734747 1 + G T UCEC 90734748 + 90734728 90734768 41 TGATGAAATTGACGCCATTGGGACAAAAAGGTAGACTTTCT TGATGAAATTGACGCCATTTGGACAAAAAGGTAGACTTTCT < 41bp 0.68668489135626 0.897129634916148 NA NA prediction 0.420889487119777 Functional Gain - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90734748 chr14:90734747 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_28837 0 0 0 0 1 PSMC1 chr14:90734757 5'GT 90734757 Upstream 11bp 26303 chr3 38017317 38017317 1 + C T UCEC 38017318 + 38017298 38017338 41 GGACCTGAGTCGCCTTGGGCGGGAGCTGAGCAAAGTGATCA GGACCTGAGTCGCCTTGGGTGGGAGCTGAGCAAAGTGATCA < 41bp 0.517817025834139 0.728261398653617 NA NA prediction 0.420888745638955 Functional Gain - CTDSPL ENSG00000144677 CDS Human protein_coding chr3:38017318 chr3:38017317 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_28838 0 0 1 0 1 CTDSPL chr3:38017385 5'GT 38017385 Upstream 69bp 26304 chr12 94072616 94072616 1 + G T OV 94072617 + 94072597 94072637 41 TGGGTGCAGAGGTATTGGTGGAGGGACTGGTTCTTCAGTAC TGGGTGCAGAGGTATTGGTTGAGGGACTGGTTCTTCAGTAC < 41bp 0.372202230134805 0.710443975527229 NA NA prediction 0.420887951054457 Functional Gain - CRADD ENSG00000169372 CDS Human protein_coding chr12:94072617 chr12:94072616 synonymous SNV . 0 20 hm7G_associated_SNPs_28839 0 0 1 0 1 CRADD chr12:94072545 3'AG 94072545 Downstream 72bp 26305 chr11 63670560 63670560 1 + C T UCEC 63670561 + 63670541 63670581 41 CCTCTCCACCAGCACAAATCGAAGCAGGAATTCCCCACTTT CCTCTCCACCAGCACAAATTGAAGCAGGAATTCCCCACTTT < 41bp 0.513732391212738 0.724168385887159 NA NA prediction 0.420871989348843 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63670561 chr11:63670560 stopgain 0.997 1 20 hm7G_associated_SNPs_28840 0 0 1 0 2 MARK2 chr11:63670533 3'AG 63670533 Downstream 28bp 26306 chr11 63670560 63670560 1 + C T UCEC 63670561 + 63670541 63670581 41 CCTCTCCACCAGCACAAATCGAAGCAGGAATTCCCCACTTT CCTCTCCACCAGCACAAATTGAAGCAGGAATTCCCCACTTT < 41bp 0.513732391212738 0.724168385887159 NA NA prediction 0.420871989348843 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63670561 chr11:63670560 stopgain 0.997 1 20 hm7G_associated_SNPs_28840 0 0 1 0 2 MARK2 chr11:63670630 5'GT 63670630 Upstream 71bp 26307 chr19 50957609 50957609 1 + G A LUAD 50957610 + 50957590 50957630 41 GAGCCACCAATGTACGATGGGGGGAAGCCAGTCACCGGTGA GAGCCACCAATGTACGATGAGGGGAAGCCAGTCACCGGTGA < 41bp 0.52864165967666 0.739071293798224 NA NA prediction 0.420859268243128 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957610 chr19:50957609 nonsynonymous SNV 0.367 3 20 hm7G_associated_SNPs_28842 0 0 0 0 2 MYBPC2 chr19:50957522 3'AG 50957522 Downstream 88bp 26308 chr19 50957609 50957609 1 + G A LUAD 50957610 + 50957590 50957630 41 GAGCCACCAATGTACGATGGGGGGAAGCCAGTCACCGGTGA GAGCCACCAATGTACGATGAGGGGAAGCCAGTCACCGGTGA < 41bp 0.52864165967666 0.739071293798224 NA NA prediction 0.420859268243128 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50957610 chr19:50957609 nonsynonymous SNV 0.367 3 20 hm7G_associated_SNPs_28842 0 0 0 0 2 MYBPC2 chr19:50957626 5'GT 50957626 Upstream 18bp 26309 chr3 184102995 184102995 1 + G A rs142103641 184102996 + 184102976 184103016 41 CCTGGAACGCCAGGGCCTCGGCGGCTGCTGAAGGGATTCTA CCTGGAACGCCAGGGCCTCAGCGGCTGCTGAAGGGATTCTA < 41bp 0.538001830614307 0.748427865294811 NA NA prediction 0.420852069361007 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184102996 chr3:184102995 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_28844 0 0 1 0 1 CHRD chr3:184103026 5'GT 184103026 Upstream 32bp 26310 chr5 167868741 167868741 1 + C T COAD 167868742 + 167868722 167868762 41 GTCTGGGGAGAGGTCGACTCGCTGGTACAACCTTCTCAGCT GTCTGGGGAGAGGTCGACTTGCTGGTACAACCTTCTCAGCT < 41bp 0.493711249384913 0.710425506325394 NA NA prediction 0.420851012650788 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167868742 chr5:167868741 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_28845 0 0 0 0 2 WWC1 chr5:167868687 3'AG 167868687 Downstream 55bp 26311 chr5 167868741 167868741 1 + C T COAD 167868742 + 167868722 167868762 41 GTCTGGGGAGAGGTCGACTCGCTGGTACAACCTTCTCAGCT GTCTGGGGAGAGGTCGACTTGCTGGTACAACCTTCTCAGCT < 41bp 0.493711249384913 0.710425506325394 NA NA prediction 0.420851012650788 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167868742 chr5:167868741 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_28845 0 0 0 0 2 WWC1 chr5:167868839 5'GT 167868839 Upstream 99bp 26312 chr4 6580149 6580149 1 + G A SKCM 6580150 + 6580130 6580170 41 TCCTGGAGGAAGGACGCCTGGAATTTGTCATCGGAGGCCAG TCCTGGAGGAAGGACGCCTAGAATTTGTCATCGGAGGCCAG < 41bp 0.514934985122574 0.72535220949588 NA NA prediction 0.420834448746612 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6580150 chr4:6580149 synonymous SNV . 0 20 hm7G_associated_SNPs_28847 0 0 1 0 2 MAN2B2 chr4:6580120 3'AG 6580120 Downstream 30bp 26313 chr4 6580149 6580149 1 + G A SKCM 6580150 + 6580130 6580170 41 TCCTGGAGGAAGGACGCCTGGAATTTGTCATCGGAGGCCAG TCCTGGAGGAAGGACGCCTAGAATTTGTCATCGGAGGCCAG < 41bp 0.514934985122574 0.72535220949588 NA NA prediction 0.420834448746612 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6580150 chr4:6580149 synonymous SNV . 0 20 hm7G_associated_SNPs_28847 0 0 1 0 2 MAN2B2 chr4:6580225 5'GT 6580225 Upstream 77bp 26314 chr19 17449445 17449445 1 + G A GBM 17449446 + 17449426 17449466 41 CCGAAGTGGAGGGGCTGGCGGACCTTATCCACGCGGAAACA CCGAAGTGGAGGGGCTGGCAGACCTTATCCACGCGGAAACA < 41bp 0.521842797007235 0.732259013936789 NA NA prediction 0.420832433859109 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17449446 chr19:17449445 synonymous SNV . 0 20 hm7G_associated_SNPs_28848 0 0 1 0 1 GTPBP3 chr19:17449348 3'AG 17449348 Downstream 98bp 26315 chr2 234102479 234102479 1 + G A LUAD 234102480 + 234102460 234102500 41 GAGGGCTGCATTGCCCTTCGGTTAGAGGCCACAGAAACGCA GAGGGCTGCATTGCCCTTCAGTTAGAGGCCACAGAAACGCA < 41bp 0.504723690128461 0.715138540723945 NA NA prediction 0.420829701190968 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234102480 chr2:234102479 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_28849 0 0 0 0 1 INPP5D chr2:234102458 3'AG 234102458 Downstream 22bp 26316 chr2 220400004 220400004 1 + G A COAD 220400005 + 220399985 220400025 41 CCCAACAGGGGCTCAGCCCGGTACCTGGCGAGGAAGTACAA CCCAACAGGGGCTCAGCCCAGTACCTGGCGAGGAAGTACAA < 41bp 0.502099725043003 0.712511500751116 NA NA prediction 0.420823551416226 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220400005 chr2:220400004 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_28851 0 0 1 0 1 ASIC4 chr2:220400046 5'GT 220400046 Upstream 43bp 26317 chr20 48600834 48600834 1 + G A ESCA 48600835 + 48600815 48600855 41 CTGCGTCTGCGGAACCTGCGGGAAGGCCTTCTCTAGGCCCT CTGCGTCTGCGGAACCTGCAGGAAGGCCTTCTCTAGGCCCT < 41bp 0.529663259120201 0.740072596952333 NA NA prediction 0.420818675664263 Functional Gain - SNAI1 ENSG00000124216 CDS Human protein_coding chr20:48600835 chr20:48600834 nonsynonymous SNV 0.943 4 20 hm7G_associated_SNPs_28852 0 0 1 0 1 SNAI1 chr20:48600888 5'GT 48600888 Upstream 55bp 26318 chr2 128184754 128184754 1 + C T UCEC 128184755 + 128184735 128184775 41 CCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGTC CCCTCCTGGGTGCTGACAGTGGCCCACTGCATGGATGAGTC < 41bp 0.504903490261208 0.715309268589872 NA NA prediction 0.420811556657329 Functional Gain - PROC ENSG00000115718 CDS Human protein_coding chr2:128184755 chr2:128184754 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_28853 0 0 1 0 2 PROC chr2:128184681 3'AG 128184681 Downstream 74bp 26319 chr2 128184754 128184754 1 + C T UCEC 128184755 + 128184735 128184775 41 CCCTCCTGGGTGCTGACAGCGGCCCACTGCATGGATGAGTC CCCTCCTGGGTGCTGACAGTGGCCCACTGCATGGATGAGTC < 41bp 0.504903490261208 0.715309268589872 NA NA prediction 0.420811556657329 Functional Gain - PROC ENSG00000115718 CDS Human protein_coding chr2:128184755 chr2:128184754 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_28853 0 0 1 0 2 PROC chr2:128184798 5'GT 128184798 Upstream 45bp 26320 chr1 150464927 150464927 1 + C T SKCM 150464928 + 150464908 150464948 41 TTGCCAGGGCCCCCACCTTCGGCATACTGGACAGATTGGAG TTGCCAGGGCCCCCACCTTTGGCATACTGGACAGATTGGAG < 41bp 0.523510689105056 0.733914033367022 NA NA prediction 0.420806688523932 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150464928 chr1:150464927 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28855 0 0 1 0 2 TARS2 chr1:150464887 3'AG 150464887 Downstream 41bp 26321 chr1 150464927 150464927 1 + C T SKCM 150464928 + 150464908 150464948 41 TTGCCAGGGCCCCCACCTTCGGCATACTGGACAGATTGGAG TTGCCAGGGCCCCCACCTTTGGCATACTGGACAGATTGGAG < 41bp 0.523510689105056 0.733914033367022 NA NA prediction 0.420806688523932 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150464928 chr1:150464927 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28855 0 0 1 0 2 TARS2 chr1:150464965 5'GT 150464965 Upstream 39bp 26322 chr22 29630337 29630337 1 + G A rs3950176 29630338 + 29630318 29630358 41 CAAGGCTCTGCTGGGCAGCGGGTAAGTGTTGCTGTCTGTCC CAAGGCTCTGCTGGGCAGCAGGTAAGTGTTGCTGTCTGTCC < 41bp 0.511446241999664 0.721848920508809 NA NA prediction 0.420805357018289 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29630338 chr22:29630337 nonsynonymous SNV 0.427 0 20 hm7G_associated_SNPs_28857 0 0 0 0 2 EMID1 chr22:29630294 3'AG 29630294 Downstream 44bp 26323 chr22 29630337 29630337 1 + G A rs3950176 29630338 + 29630318 29630358 41 CAAGGCTCTGCTGGGCAGCGGGTAAGTGTTGCTGTCTGTCC CAAGGCTCTGCTGGGCAGCAGGTAAGTGTTGCTGTCTGTCC < 41bp 0.511446241999664 0.721848920508809 NA NA prediction 0.420805357018289 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29630338 chr22:29630337 nonsynonymous SNV 0.427 0 20 hm7G_associated_SNPs_28857 0 0 0 0 2 EMID1 chr22:29630338 5'GT 29630338 Upstream 2bp 26324 chr5 5242297 5242297 1 + C T LUSC 5242298 + 5242278 5242318 41 CTGAGTGCTCCGTGTCCTGCGGAGGGGGTAGGTGCCTTCCA CTGAGTGCTCCGTGTCCTGTGGAGGGGGTAGGTGCCTTCCA < 41bp 0.498906840681881 0.710401768520609 NA NA prediction 0.420803537041219 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5242298 chr5:5242297 synonymous SNV . 0 20 hm7G_associated_SNPs_28858 0 0 0 0 1 ADAMTS16 chr5:5242304 5'GT 5242304 Upstream 8bp 26325 chr19 3743953 3743953 1 + G A UCEC 3743954 + 3743934 3743974 41 CAGCCAGTTTCAAGCGCCCGGTAGTGATCCTGGGACCCGTG CAGCCAGTTTCAAGCGCCCAGTAGTGATCCTGGGACCCGTG < 41bp 0.506676120314388 0.717076368748097 NA NA prediction 0.420800496867418 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3743954 chr19:3743953 synonymous SNV . 0 20 hm7G_associated_SNPs_28859 0 0 0 0 2 TJP3 chr19:3743937 3'AG 3743937 Downstream 17bp 26326 chr19 3743953 3743953 1 + G A UCEC 3743954 + 3743934 3743974 41 CAGCCAGTTTCAAGCGCCCGGTAGTGATCCTGGGACCCGTG CAGCCAGTTTCAAGCGCCCAGTAGTGATCCTGGGACCCGTG < 41bp 0.506676120314388 0.717076368748097 NA NA prediction 0.420800496867418 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3743954 chr19:3743953 synonymous SNV . 0 20 hm7G_associated_SNPs_28859 0 0 0 0 2 TJP3 chr19:3744032 5'GT 3744032 Upstream 80bp 26327 chr1 171759661 171759661 1 + C T COAD 171759662 + 171759642 171759682 41 GAGGACCTCCCTGCAGCCCCGGGGCAGTCCATTGATAAGAG GAGGACCTCCCTGCAGCCCTGGGGCAGTCCATTGATAAGAG < 41bp 0.503562888159843 0.71395960941917 NA NA prediction 0.420793442518654 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759662 chr1:171759661 nonsynonymous SNV 0.533 1 20 hm7G_associated_SNPs_28861 0 0 0 0 2 METTL13 chr1:171759592 3'AG 171759592 Downstream 70bp 26328 chr1 171759661 171759661 1 + C T COAD 171759662 + 171759642 171759682 41 GAGGACCTCCCTGCAGCCCCGGGGCAGTCCATTGATAAGAG GAGGACCTCCCTGCAGCCCTGGGGCAGTCCATTGATAAGAG < 41bp 0.503562888159843 0.71395960941917 NA NA prediction 0.420793442518654 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759662 chr1:171759661 nonsynonymous SNV 0.533 1 20 hm7G_associated_SNPs_28861 0 0 0 0 2 METTL13 chr1:171759756 5'GT 171759756 Upstream 96bp 26329 chr16 602651 602651 1 + G T LUSC 602652 + 602632 602672 41 GAGCCTCCCCAGAGCCGCCGGGCCACGTGCTGGCTGTGTAC GAGCCTCCCCAGAGCCGCCTGGCCACGTGCTGGCTGTGTAC < 41bp 0.358111794826213 0.710393286516094 NA NA prediction 0.420786573032187 Functional Gain - CAPN15 ENSG00000103326 CDS Human protein_coding chr16:602652 chr16:602651 synonymous SNV . 0 20 hm7G_associated_SNPs_28862 0 0 1 0 1 CAPN15 chr16:602605 3'AG 602605 Downstream 47bp 26330 chrX 128881685 128881685 1 + C T LIHC 128881686 + 128881666 128881706 41 TGGGGATCAGAGAGGCCACCGGTTCCAAATCAACCCATTTA TGGGGATCAGAGAGGCCACTGGTTCCAAATCAACCCATTTA < 41bp 0.496546795682134 0.710391337923384 NA NA prediction 0.420782675846769 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128881686 chrX:128881685 nonsynonymous SNV 0.044 0 20 hm7G_associated_SNPs_28863 0 0 0 0 1 XPNPEP2 chrX:128881729 5'GT 128881729 Upstream 45bp 26331 chr2 206610571 206610571 1 + G A GBM 206610572 + 206610552 206610592 41 CGGAGAGGTGGTCGCCGGCGGGGATTGGGATGCGGCTGGAG CGGAGAGGTGGTCGCCGGCAGGGATTGGGATGCGGCTGGAG < 41bp 0.513772019061997 0.724160321831438 NA NA prediction 0.420776605538882 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206610572 chr2:206610571 synonymous SNV . 0 20 hm7G_associated_SNPs_28864 0 0 1 0 1 NRP2 chr2:206610614 5'GT 206610614 Upstream 44bp 26332 chr11 120201136 120201136 1 + G T UCEC 120201137 + 120201117 120201157 41 ATCTGGCGCTTTGCATGGAGGAAGAGCATCAAGAAGTACCA ATCTGGCGCTTTGCATGGATGAAGAGCATCAAGAAGTACCA < 41bp 0.678354081133004 0.888740798424846 NA NA prediction 0.420773434583684 Functional Gain - TMEM136 ENSG00000181264 CDS Human protein_coding chr11:120201137 chr11:120201136 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_28865 0 0 0 0 1 TMEM136 chr11:120201116 3'AG 120201116 Downstream 21bp 26333 chr10 3208454 3208454 1 - G A UCEC 3208453 - 3208433 3208473 41 TTTCTTCAAAATGTTGAACCGGTCCCTCTCCACGTTCATGA TTTCTTCAAAATGTTGAACTGGTCCCTCTCCACGTTCATGA < 41bp 0.489738811625885 0.710383675475637 NA NA prediction 0.420767350951274 Functional Gain - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3208453 chr10:3208454 nonsynonymous SNV 0.054 4 20 hm7G_associated_SNPs_28866 0 0 1 0 1 PITRM1 chr10:3208421 5'GT 3208421 Upstream 34bp 26334 chr11 6414584 6414584 1 + G T UCEC 6414585 + 6414565 6414605 41 AGCTCCAGTGGCTGGTGGGGGAGCTTCAGGCTGCTGAGGAT AGCTCCAGTGGCTGGTGGGTGAGCTTCAGGCTGCTGAGGAT < 41bp 0.367463345338036 0.710383178391976 NA NA prediction 0.420766356783951 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6414585 chr11:6414584 synonymous SNV . 0 20 hm7G_associated_SNPs_28867 0 0 0 0 1 SMPD1 chr11:6414617 5'GT 6414617 Upstream 34bp 26335 chr16 56920313 56920313 1 + C T SKCM 56920314 + 56920294 56920334 41 CACGGGGCCCCCCAACTTCCGCCCGGCCCTGGTGGACTTTG CACGGGGCCCCCCAACTTCTGCCCGGCCCTGGTGGACTTTG < 41bp 0.501786651887994 0.712164561655469 NA NA prediction 0.42075581953495 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920314 chr16:56920313 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_28868 0 0 0 0 2 SLC12A3 chr16:56920276 3'AG 56920276 Downstream 38bp 26336 chr16 56920313 56920313 1 + C T SKCM 56920314 + 56920294 56920334 41 CACGGGGCCCCCCAACTTCCGCCCGGCCCTGGTGGACTTTG CACGGGGCCCCCCAACTTCTGCCCGGCCCTGGTGGACTTTG < 41bp 0.501786651887994 0.712164561655469 NA NA prediction 0.42075581953495 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56920314 chr16:56920313 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_28868 0 0 0 0 2 SLC12A3 chr16:56920387 5'GT 56920387 Upstream 75bp 26337 chr10 50854619 50854619 1 + G A SKCM 50854620 + 50854600 50854640 41 TGTATGCCTGGACGCGCCAGGAGGCGTGGAGCTCAGCGACA TGTATGCCTGGACGCGCCAAGAGGCGTGGAGCTCAGCGACA < 41bp 0.529916282385264 0.740291131314476 NA NA prediction 0.420749697858424 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50854620 chr10:50854619 nonsynonymous SNV 0.043 1 20 hm7G_associated_SNPs_28870 0 0 0 0 1 CHAT chr10:50854551 3'AG 50854551 Downstream 69bp 26338 chr19 55177723 55177723 1 + G T BLCA 55177724 + 55177704 55177744 41 TGATTTCCAACGTCCTCCAGGGGCTGCCGAGCCAGAGCCCA TGATTTCCAACGTCCTCCATGGGCTGCCGAGCCAGAGCCCA < 41bp 0.355721362800397 0.710374192506709 NA NA prediction 0.420748385013418 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177724 chr19:55177723 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_28871 0 0 0 0 2 LILRB4 chr19:55177691 3'AG 55177691 Downstream 33bp 26339 chr19 55177723 55177723 1 + G T BLCA 55177724 + 55177704 55177744 41 TGATTTCCAACGTCCTCCAGGGGCTGCCGAGCCAGAGCCCA TGATTTCCAACGTCCTCCATGGGCTGCCGAGCCAGAGCCCA < 41bp 0.355721362800397 0.710374192506709 NA NA prediction 0.420748385013418 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55177724 chr19:55177723 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_28871 0 0 0 0 2 LILRB4 chr19:55177766 5'GT 55177766 Upstream 44bp 26340 chr20 42969841 42969841 1 + G T LUAD 42969842 + 42969822 42969862 41 CTTTCTTTCCCCAGGTCTGGGACAAGCGGCTGGCCAGGGCT CTTTCTTTCCCCAGGTCTGTGACAAGCGGCTGGCCAGGGCT < 41bp 0.696638793860092 0.907008683560166 NA NA prediction 0.420739779400148 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42969842 chr20:42969841 nonsynonymous SNV 0.576 4 20 hm7G_associated_SNPs_28872 0 0 0 0 1 R3HDML chr20:42969836 3'AG 42969836 Downstream 6bp 26341 chr9 1055730 1055730 1 + G T GBM 1055731 + 1055711 1055751 41 TTTTTTCCTAGTTCTCCTTGGATTATTCTACAGCTATTATG TTTTTTCCTAGTTCTCCTTTGATTATTCTACAGCTATTATG < 41bp 0.410653813407679 0.710365354984916 NA NA prediction 0.420730709969833 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1055731 chr9:1055730 stopgain 1.000 0 20 hm7G_associated_SNPs_28874 0 0 0 0 2 DMRT2 chr9:1055722 3'AG 1055722 Downstream 9bp 26342 chr9 1055730 1055730 1 + G T GBM 1055731 + 1055711 1055751 41 TTTTTTCCTAGTTCTCCTTGGATTATTCTACAGCTATTATG TTTTTTCCTAGTTCTCCTTTGATTATTCTACAGCTATTATG < 41bp 0.410653813407679 0.710365354984916 NA NA prediction 0.420730709969833 Functional Gain - DMRT2 ENSG00000173253 CDS Human protein_coding chr9:1055731 chr9:1055730 stopgain 1.000 0 20 hm7G_associated_SNPs_28874 0 0 0 0 2 DMRT2 chr9:1055799 5'GT 1055799 Upstream 70bp 26343 chr9 35658687 35658687 1 + C T COAD 35658688 + 35658668 35658708 41 CTGGGGGCGCTGTACACCGCGGCCGTCGCGGCTTTTGTGCT CTGGGGGCGCTGTACACCGTGGCCGTCGCGGCTTTTGTGCT < 41bp 0.501858027745403 0.712220910927453 NA NA prediction 0.420725766364098 Functional Gain - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35658688 chr9:35658687 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_28876 0 0 0 0 1 CCDC107 chr9:35658724 5'GT 35658724 Upstream 38bp 26344 chr8 67357510 67357510 1 + C T CESC 67357511 + 67357491 67357531 41 TTGATGCCTATGTTGCTGTCGGTGGTGGCTCTACCATGGAC TTGATGCCTATGTTGCTGTTGGTGGTGGCTCTACCATGGAC < 41bp 0.51986772512835 0.730228315077241 NA NA prediction 0.420721179897782 Functional Gain - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67357511 chr8:67357510 synonymous SNV . 0 20 hm7G_associated_SNPs_28879 0 0 1 0 1 ADHFE1 chr8:67357453 3'AG 67357453 Downstream 58bp 26345 chr2 128331575 128331575 1 + G A GBM 128331576 + 128331556 128331596 41 CATCTACTTTAACCCCAGCGGGGTGATCGAGGGCGCGCGCA CATCTACTTTAACCCCAGCAGGGTGATCGAGGGCGCGCGCA < 41bp 0.519807527399202 0.730164764711068 NA NA prediction 0.420714474623731 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128331576 chr2:128331575 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28880 0 0 0 0 2 MYO7B chr2:128331495 3'AG 128331495 Downstream 81bp 26346 chr2 128331575 128331575 1 + G A GBM 128331576 + 128331556 128331596 41 CATCTACTTTAACCCCAGCGGGGTGATCGAGGGCGCGCGCA CATCTACTTTAACCCCAGCAGGGTGATCGAGGGCGCGCGCA < 41bp 0.519807527399202 0.730164764711068 NA NA prediction 0.420714474623731 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128331576 chr2:128331575 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_28880 0 0 0 0 2 MYO7B chr2:128331637 5'GT 128331637 Upstream 63bp 26347 chr17 5064860 5064860 1 + C T UCEC 5064861 + 5064841 5064881 41 TCAATATCCATTCACTCTACGAGTTGTGCAGAAAGATGGGA TCAATATCCATTCACTCTATGAGTTGTGCAGAAAGATGGGA < 41bp 0.5092313128225 0.719587510043099 NA NA prediction 0.420712394441197 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5064861 chr17:5064860 stopgain 0.994 1 20 hm7G_associated_SNPs_28881 0 0 0 0 2 USP6 chr17:5064823 3'AG 5064823 Downstream 38bp 26348 chr17 5064860 5064860 1 + C T UCEC 5064861 + 5064841 5064881 41 TCAATATCCATTCACTCTACGAGTTGTGCAGAAAGATGGGA TCAATATCCATTCACTCTATGAGTTGTGCAGAAAGATGGGA < 41bp 0.5092313128225 0.719587510043099 NA NA prediction 0.420712394441197 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5064861 chr17:5064860 stopgain 0.994 1 20 hm7G_associated_SNPs_28881 0 0 0 0 2 USP6 chr17:5064909 5'GT 5064909 Upstream 50bp 26349 chr17 38126892 38126892 1 + G A STAD 38126893 + 38126873 38126913 41 CCCCTTCTTCGCCCCATTGGGGCTACAGGTTTGATTCAAAC CCCCTTCTTCGCCCCATTGAGGCTACAGGTTTGATTCAAAC < 41bp 0.499086161868656 0.710355632019645 NA NA prediction 0.42071126403929 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38126893 chr17:38126892 nonsynonymous SNV 0.424 2 20 hm7G_associated_SNPs_28882 0 0 0 0 1 GSDMA chr17:38126900 5'GT 38126900 Upstream 9bp 26350 chr5 140209202 140209202 1 + C T SKCM 140209203 + 140209183 140209223 41 GCGTTGTCGAGCTACATTTCGGTGCACGCGGAGAGCGGCAA GCGTTGTCGAGCTACATTTTGGTGCACGCGGAGAGCGGCAA < 41bp 0.500997526449819 0.711352750091597 NA NA prediction 0.420710447283557 Functional Gain - PCDHA6 ENSG00000081842 CDS Human protein_coding chr5:140209203 chr5:140209202 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_28884 0 0 0 0 1 PCDHA6 chr5:140209278 5'GT 140209278 Upstream 77bp 26351 chr6 161143565 161143565 1 + C T rs4252119 161143566 + 161143546 161143586 41 GTCATCTATGACACCACACCGGCACCAGAAGACCCCAGAAA GTCATCTATGACACCACACTGGCACCAGAAGACCCCAGAAA < 41bp 0.504843620096712 0.7151986271865 NA NA prediction 0.420710014179575 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161143566 chr6:161143565 nonsynonymous SNV 0.333 0 20 hm7G_associated_SNPs_28885 0 0 0 0 1 PLG chr6:161143599 5'GT 161143599 Upstream 35bp 26352 chr2 97492580 97492580 1 + G T LUSC 97492581 + 97492561 97492601 41 CCATCTTAGGAGACACCGTGGTGAAGAGGAAGCCTGCTTCT CCATCTTAGGAGACACCGTTGTGAAGAGGAAGCCTGCTTCT < 41bp 0.368108979546426 0.710352440671981 NA NA prediction 0.420704881343961 Functional Gain - CNNM3 ENSG00000168763 CDS Human protein_coding chr2:97492581 chr2:97492580 synonymous SNV . 0 20 hm7G_associated_SNPs_28886 0 0 1 0 1 CNNM3 chr2:97492570 3'AG 97492570 Downstream 11bp 26353 chr4 166964498 166964498 1 + C T COAD 166964499 + 166964479 166964519 41 TATCCTGATGACTATCGCCCGATGAAAGAATGTGTGTGGAA TATCCTGATGACTATCGCCTGATGAAAGAATGTGTGTGGAA < 41bp 0.524700287449 0.735048950398544 NA NA prediction 0.420697325899088 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166964499 chr4:166964498 nonsynonymous SNV 0.117 3 20 hm7G_associated_SNPs_28888 0 0 0 0 2 TLL1 chr4:166964426 3'AG 166964426 Downstream 73bp 26354 chr4 166964498 166964498 1 + C T COAD 166964499 + 166964479 166964519 41 TATCCTGATGACTATCGCCCGATGAAAGAATGTGTGTGGAA TATCCTGATGACTATCGCCTGATGAAAGAATGTGTGTGGAA < 41bp 0.524700287449 0.735048950398544 NA NA prediction 0.420697325899088 Functional Gain - TLL1 ENSG00000038295 CDS Human protein_coding chr4:166964499 chr4:166964498 nonsynonymous SNV 0.117 3 20 hm7G_associated_SNPs_28888 0 0 0 0 2 TLL1 chr4:166964571 5'GT 166964571 Upstream 74bp 26355 chr13 102235597 102235597 1 + C T UCEC 102235598 + 102235578 102235618 41 GTGGTGAATGTACCTGTCACGATGTTGATCCGACTGGGGAC GTGGTGAATGTACCTGTCATGATGTTGATCCGACTGGGGAC < 41bp 0.501108809545435 0.711454512577299 NA NA prediction 0.420691406063727 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102235598 chr13:102235597 synonymous SNV . 0 20 hm7G_associated_SNPs_28890 0 0 0 0 1 ITGBL1 chr13:102235566 3'AG 102235566 Downstream 32bp 26356 chr1 171761218 171761218 1 + C T rs2232823 171761219 + 171761199 171761239 41 GCCTCCCCCTCTTTGTCCACGATCATTTTCCAAAGTCCTGC GCCTCCCCCTCTTTGTCCATGATCATTTTCCAAAGTCCTGC < 41bp 0.507574418185153 0.717916733765528 NA NA prediction 0.42068463116075 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171761219 chr1:171761218 synonymous SNV . 0 20 hm7G_associated_SNPs_28891 0 0 1 0 1 METTL13 chr1:171761157 3'AG 171761157 Downstream 62bp 26357 chr2 220504227 220504227 1 + G A UCEC 220504228 + 220504208 220504248 41 ATCGTCAGCCAGAAGGCGCGGAGGCTGCTCAAGGGCTCCGG ATCGTCAGCCAGAAGGCGCAGAGGCTGCTCAAGGGCTCCGG < 41bp 0.524672185939093 0.735007783577922 NA NA prediction 0.420671195277658 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220504228 chr2:220504227 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_28892 0 0 0 0 1 SLC4A3 chr2:220504204 3'AG 220504204 Downstream 24bp 26358 chr6 160557340 160557340 1 + G A STAD 160557341 + 160557321 160557361 41 CCACATCGCTCAAAAGAATGGGAAGTTGCCTCCTGCTGATT CCACATCGCTCAAAAGAATAGGAAGTTGCCTCCTGCTGATT < 41bp 0.520261973845817 0.730595749197501 NA NA prediction 0.420667550703368 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557341 chr6:160557340 nonsynonymous SNV 0.133 0 20 hm7G_associated_SNPs_28893 0 0 0 0 2 SLC22A1 chr6:160557252 3'AG 160557252 Downstream 89bp 26359 chr6 160557340 160557340 1 + G A STAD 160557341 + 160557321 160557361 41 CCACATCGCTCAAAAGAATGGGAAGTTGCCTCCTGCTGATT CCACATCGCTCAAAAGAATAGGAAGTTGCCTCCTGCTGATT < 41bp 0.520261973845817 0.730595749197501 NA NA prediction 0.420667550703368 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557341 chr6:160557340 nonsynonymous SNV 0.133 0 20 hm7G_associated_SNPs_28893 0 0 0 0 2 SLC22A1 chr6:160557366 5'GT 160557366 Upstream 27bp 26360 chr19 45537749 45537749 1 + G A COAD 45537750 + 45537730 45537770 41 AACGGCGGAAGAAAAAGCCGGCCATCCTGGACCACTTCCTG AACGGCGGAAGAAAAAGCCAGCCATCCTGGACCACTTCCTG < 41bp 0.47956602041164 0.710328675662121 NA NA prediction 0.420657351324241 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45537750 chr19:45537749 synonymous SNV . 0 20 hm7G_associated_SNPs_28895 0 0 1 0 2 RELB chr19:45537709 3'AG 45537709 Downstream 41bp 26361 chr19 45537749 45537749 1 + G A COAD 45537750 + 45537730 45537770 41 AACGGCGGAAGAAAAAGCCGGCCATCCTGGACCACTTCCTG AACGGCGGAAGAAAAAGCCAGCCATCCTGGACCACTTCCTG < 41bp 0.47956602041164 0.710328675662121 NA NA prediction 0.420657351324241 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45537750 chr19:45537749 synonymous SNV . 0 20 hm7G_associated_SNPs_28895 0 0 1 0 2 RELB chr19:45537786 5'GT 45537786 Upstream 38bp 26362 chrX 10188916 10188916 1 + G T HNSC 10188917 + 10188897 10188937 41 GTGCCTGGTGACGCGGAGCGGGTGAGTAGCCGGACATGTGG GTGCCTGGTGACGCGGAGCTGGTGAGTAGCCGGACATGTGG < 41bp 0.379955375503795 0.710325200856167 NA NA prediction 0.420650401712334 Functional Gain - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10188917 chrX:10188916 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_28896 0 0 0 0 1 CLCN4 chrX:10188917 5'GT 10188917 Upstream 2bp 26363 chr14 78353558 78353558 1 + G A STAD 78353559 + 78353539 78353579 41 GTCCAGCACCCAAAGGTGCGGGCTCAGAGCTCGAAGGACAT GTCCAGCACCCAAAGGTGCAGGCTCAGAGCTCGAAGGACAT < 41bp 0.505422775505056 0.715747275886625 NA NA prediction 0.420649000763138 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78353559 chr14:78353558 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_28897 0 0 0 0 1 ADCK1 chr14:78353592 5'GT 78353592 Upstream 35bp 26364 chr1 160389364 160389364 1 + C T BRCA 160389365 + 160389345 160389385 41 AGGTCGTGCGCTCCACCGACGGCGCCAGCCGCTTCTACAAC AGGTCGTGCGCTCCACCGATGGCGCCAGCCGCTTCTACAAC < 41bp 0.505292742556165 0.715615517434225 NA NA prediction 0.420645549756119 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160389365 chr1:160389364 synonymous SNV . 0 20 hm7G_associated_SNPs_28898 0 0 0 0 1 VANGL2 chr1:160389399 5'GT 160389399 Upstream 36bp 26365 chr17 78082576 78082576 1 + G A KICH 78082577 + 78082557 78082597 41 ATGGCTTCCGGGACTTCCCGGCCATGGTGCAGGAGCTGCAC ATGGCTTCCGGGACTTCCCAGCCATGGTGCAGGAGCTGCAC < 41bp 0.571007280843791 0.781327550201917 NA NA prediction 0.420640538716251 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78082577 chr17:78082576 synonymous SNV . 0 20 hm7G_associated_SNPs_28900 0 0 1 0 2 GAA chr17:78082496 3'AG 78082496 Downstream 81bp 26366 chr17 78082576 78082576 1 + G A KICH 78082577 + 78082557 78082597 41 ATGGCTTCCGGGACTTCCCGGCCATGGTGCAGGAGCTGCAC ATGGCTTCCGGGACTTCCCAGCCATGGTGCAGGAGCTGCAC < 41bp 0.571007280843791 0.781327550201917 NA NA prediction 0.420640538716251 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78082577 chr17:78082576 synonymous SNV . 0 20 hm7G_associated_SNPs_28900 0 0 1 0 2 GAA chr17:78082627 5'GT 78082627 Upstream 52bp 26367 chr12 49220567 49220567 1 + G A LUSC 49220568 + 49220548 49220588 41 CAGCGTCTCATTCGCTCCCGGGGGAAGTCACAGATGAAGCA CAGCGTCTCATTCGCTCCCAGGGGAAGTCACAGATGAAGCA < 41bp 0.538753569471319 0.749073295786088 NA NA prediction 0.420639452629537 Functional Gain - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49220568 chr12:49220567 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28902 0 0 0 0 2 CACNB3 chr12:49220542 3'AG 49220542 Downstream 26bp 26368 chr12 49220567 49220567 1 + G A LUSC 49220568 + 49220548 49220588 41 CAGCGTCTCATTCGCTCCCGGGGGAAGTCACAGATGAAGCA CAGCGTCTCATTCGCTCCCAGGGGAAGTCACAGATGAAGCA < 41bp 0.538753569471319 0.749073295786088 NA NA prediction 0.420639452629537 Functional Gain - CACNB3 ENSG00000167535 CDS Human protein_coding chr12:49220568 chr12:49220567 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_28902 0 0 0 0 2 CACNB3 chr12:49220637 5'GT 49220637 Upstream 71bp 26369 chr17 72920943 72920943 1 + G A SKCM 72920944 + 72920924 72920964 41 TCACTGCGATGATGCTGCTGGCAACGCTCTGGATCCTCTTC TCACTGCGATGATGCTGCTAGCAACGCTCTGGATCCTCTTC < 41bp 0.564281250656384 0.774589886954474 NA NA prediction 0.42061727259618 Functional Gain - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72920944 chr17:72920943 synonymous SNV . 0 20 hm7G_associated_SNPs_28904 0 0 0 0 1 OTOP2 chr17:72921040 5'GT 72921040 Upstream 98bp 26370 chr8 1842705 1842705 1 + C T READ 1842706 + 1842686 1842726 41 GCGTTTCCGAGTGGGACTCCGTGGAAATGATAGGCGATGTC GCGTTTCCGAGTGGGACTCTGTGGAAATGATAGGCGATGTC < 41bp 0.500294062380439 0.710601642338284 NA NA prediction 0.42061515991569 Functional Gain - ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1842706 chr8:1842705 synonymous SNV . 0 20 hm7G_associated_SNPs_28905 0 0 1 0 1 ARHGEF10 chr8:1842738 5'GT 1842738 Upstream 34bp 26371 chr16 22130236 22130236 1 + G A rs183892488 22130237 + 22130217 22130257 41 CCTCAGCACTACACCAGCCGGGACATGGATGAGCTCCTGGC CCTCAGCACTACACCAGCCAGGACATGGATGAGCTCCTGGC < 41bp 0.533697010610932 0.744001471466836 NA NA prediction 0.420608921711807 Functional Gain - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22130237 chr16:22130236 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_28907 0 0 0 0 1 VWA3A chr16:22130223 3'AG 22130223 Downstream 14bp 26372 chr1 153658635 153658635 1 + C T UCEC 153658636 + 153658616 153658656 41 GAAACGTGTGAACCGTAAACGCATTGAGCTGACACGAAAAG GAAACGTGTGAACCGTAAATGCATTGAGCTGACACGAAAAG < 41bp 0.517383898237328 0.727685571393113 NA NA prediction 0.420603346311569 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153658636 chr1:153658635 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28908 0 0 0 0 2 NPR1 chr1:153658599 3'AG 153658599 Downstream 37bp 26373 chr1 153658635 153658635 1 + C T UCEC 153658636 + 153658616 153658656 41 GAAACGTGTGAACCGTAAACGCATTGAGCTGACACGAAAAG GAAACGTGTGAACCGTAAATGCATTGAGCTGACACGAAAAG < 41bp 0.517383898237328 0.727685571393113 NA NA prediction 0.420603346311569 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153658636 chr1:153658635 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28908 0 0 0 0 2 NPR1 chr1:153658676 5'GT 153658676 Upstream 42bp 26374 chr2 153417524 153417524 1 + C T BRCA 153417525 + 153417505 153417545 41 TGTGGGCAACAGTGTCTCCCGCTCTGGAAGACATTCTGCAC TGTGGGCAACAGTGTCTCCTGCTCTGGAAGACATTCTGCAC < 41bp 0.499381635446129 0.710301291504922 NA NA prediction 0.420602583009845 Functional Gain - FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153417525 chr2:153417524 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_28909 0 0 1 0 1 FMNL2 chr2:153417549 5'GT 153417549 Upstream 26bp 26375 chr9 100124122 100124122 1 + C T UCEC 100124123 + 100124103 100124143 41 GTCCTTCACCCAGCTGAGCCGCGTGGGGAAGCCCCTGATTG GTCCTTCACCCAGCTGAGCTGCGTGGGGAAGCCCCTGATTG < 41bp 0.507204631950314 0.71750486062865 NA NA prediction 0.420600457356674 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100124123 chr9:100124122 nonsynonymous SNV 0.140 3 20 hm7G_associated_SNPs_28911 0 0 1 0 1 CCDC180 chr9:100124180 5'GT 100124180 Upstream 59bp 26376 chr19 49967707 49967707 1 + C T rs111803922 49967708 + 49967688 49967728 41 CTGTCTGGATCAACGCCCACGGCCTCAGAGACCCTTCGGTG CTGTCTGGATCAACGCCCATGGCCTCAGAGACCCTTCGGTG < 41bp 0.520504668622082 0.730801066603456 NA NA prediction 0.420592795962748 Functional Gain - ALDH16A1 ENSG00000161618;ENSG00000269469 CDS Human other chr19:49967708 chr19:49967707 synonymous SNV . 0 20 hm7G_associated_SNPs_28913 0 0 0 0 2 ALDH16A1 chr19:49967674 3'AG 49967674 Downstream 34bp 26377 chr19 49967707 49967707 1 + C T rs111803922 49967708 + 49967688 49967728 41 CTGTCTGGATCAACGCCCACGGCCTCAGAGACCCTTCGGTG CTGTCTGGATCAACGCCCATGGCCTCAGAGACCCTTCGGTG < 41bp 0.520504668622082 0.730801066603456 NA NA prediction 0.420592795962748 Functional Gain - ALDH16A1 ENSG00000161618;ENSG00000269469 CDS Human other chr19:49967708 chr19:49967707 synonymous SNV . 0 20 hm7G_associated_SNPs_28913 0 0 0 0 2 ALDH16A1 chr19:49967779 5'GT 49967779 Upstream 73bp 26378 chr22 50926721 50926721 1 + G A SKCM 50926722 + 50926702 50926742 41 AGACTGGTTCCACCTCGTCGGGCTCCTGCACGACCTGGGGA AGACTGGTTCCACCTCGTCAGGCTCCTGCACGACCTGGGGA < 41bp 0.572218028296043 0.782512620531362 NA NA prediction 0.420589184470638 Functional Gain - MIOX ENSG00000100253 CDS Human protein_coding chr22:50926722 chr22:50926721 nonsynonymous SNV 0.113 4 20 hm7G_associated_SNPs_28914 0 0 0 0 3 MIOX chr22:50926672 3'AG 50926672 Downstream 50bp 26379 chr22 50926721 50926721 1 + G A SKCM 50926722 + 50926702 50926742 41 AGACTGGTTCCACCTCGTCGGGCTCCTGCACGACCTGGGGA AGACTGGTTCCACCTCGTCAGGCTCCTGCACGACCTGGGGA < 41bp 0.572218028296043 0.782512620531362 NA NA prediction 0.420589184470638 Functional Gain - MIOX ENSG00000100253 CDS Human protein_coding chr22:50926722 chr22:50926721 nonsynonymous SNV 0.113 4 20 hm7G_associated_SNPs_28914 0 0 0 0 3 MIOX chr22:50926704 3'AG 50926704 Downstream 18bp 26380 chr22 50926721 50926721 1 + G A SKCM 50926722 + 50926702 50926742 41 AGACTGGTTCCACCTCGTCGGGCTCCTGCACGACCTGGGGA AGACTGGTTCCACCTCGTCAGGCTCCTGCACGACCTGGGGA < 41bp 0.572218028296043 0.782512620531362 NA NA prediction 0.420589184470638 Functional Gain - MIOX ENSG00000100253 CDS Human protein_coding chr22:50926722 chr22:50926721 nonsynonymous SNV 0.113 4 20 hm7G_associated_SNPs_28914 0 0 0 0 3 MIOX chr22:50926771 5'GT 50926771 Upstream 51bp 26381 chr19 46828852 46828852 1 + G A HNSC 46828853 + 46828833 46828873 41 GCACAGACTCTTCACCTCCGGGAAAGACACTGAGGCAGTGG GCACAGACTCTTCACCTCCAGGAAAGACACTGAGGCAGTGG < 41bp 0.497099346922647 0.710289898093774 NA NA prediction 0.420579796187547 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46828853 chr19:46828852 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_28915 0 0 0 0 1 HIF3A chr19:46828792 3'AG 46828792 Downstream 61bp 26382 chr6 17551787 17551787 1 + C T UCEC 17551788 + 17551768 17551808 41 TAGACTGTGAGATCGTGAGCGCCAAGTCATCTGAAATGAAC TAGACTGTGAGATCGTGAGTGCCAAGTCATCTGAAATGAAC < 41bp 0.498753926415853 0.710281482257905 NA NA prediction 0.420562964515809 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17551788 chr6:17551787 synonymous SNV . 0 20 hm7G_associated_SNPs_28917 0 0 1 0 1 CAP2 chr6:17551695 3'AG 17551695 Downstream 93bp 26383 chr19 14157389 14157389 1 + G A LGG 14157390 + 14157370 14157410 41 CCCCTGGAGAAACTCAACTGGGTCCGGCTTCCCCCTGGGAA CCCCTGGAGAAACTCAACTAGGTCCGGCTTCCCCCTGGGAA < 41bp 0.490390151022687 0.710280582724572 NA NA prediction 0.420561165449143 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14157390 chr19:14157389 stopgain 0.647 0 20 hm7G_associated_SNPs_28918 0 0 0 0 1 IL27RA chr19:14157430 5'GT 14157430 Upstream 42bp 26384 chr13 113975735 113975735 1 + G T LUSC 113975736 + 113975716 113975756 41 AAGAATGCAAGTTCTAGCCGGTTTTTCCTACAAGGAATCCA AAGAATGCAAGTTCTAGCCTGTTTTTCCTACAAGGAATCCA < 41bp 0.375606466584086 0.710279527720845 NA NA prediction 0.420559055441689 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113975736 chr13:113975735 nonsynonymous SNV 0.550 0 20 hm7G_associated_SNPs_28919 0 0 1 0 2 LAMP1 chr13:113975719 3'AG 113975719 Downstream 17bp 26385 chr13 113975735 113975735 1 + G T LUSC 113975736 + 113975716 113975756 41 AAGAATGCAAGTTCTAGCCGGTTTTTCCTACAAGGAATCCA AAGAATGCAAGTTCTAGCCTGTTTTTCCTACAAGGAATCCA < 41bp 0.375606466584086 0.710279527720845 NA NA prediction 0.420559055441689 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113975736 chr13:113975735 nonsynonymous SNV 0.550 0 20 hm7G_associated_SNPs_28919 0 0 1 0 2 LAMP1 chr13:113975785 5'GT 113975785 Upstream 51bp 26386 chr1 17257068 17257068 1 + G A UCEC 17257069 + 17257049 17257089 41 AGCTGGAGCACCGGGAGGCGGCGTGGAGGCGCGAGGAGGAG AGCTGGAGCACCGGGAGGCAGCGTGGAGGCGCGAGGAGGAG < 41bp 0.518751392615229 0.729024967735082 NA NA prediction 0.420547150239706 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17257069 chr1:17257068 synonymous SNV . 0 20 hm7G_associated_SNPs_28920 0 0 0 0 1 CROCC chr1:17257089 5'GT 17257089 Upstream 22bp 26387 chr10 105200319 105200319 1 + G A STAD 105200320 + 105200300 105200340 41 CGGGGCGGGCGGGAGTGCCGGGAGTCTGGGAGTGAGCAGGT CGGGGCGGGCGGGAGTGCCAGGAGTCTGGGAGTGAGCAGGT < 41bp 0.519900007948353 0.73016836780014 NA NA prediction 0.420536719703574 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105200320 chr10:105200319 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28922 0 0 1 0 1 PDCD11 chr10:105200338 5'GT 105200338 Upstream 20bp 26388 chr3 14172438 14172438 1 + C T COAD 14172439 + 14172419 14172459 41 GGCTGGTGCACATCATTGGCGCCTTACGGACATCCAAGGTA GGCTGGTGCACATCATTGGTGCCTTACGGACATCCAAGGTA < 41bp 0.499516526886455 0.710266855735137 NA NA prediction 0.420533711470274 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14172439 chr3:14172438 synonymous SNV . 0 20 hm7G_associated_SNPs_28923 2 0 1 0 1 TMEM43 chr3:14172456 5'GT 14172456 Upstream 19bp 26389 chr17 48631634 48631634 1 + C T rs191570757 48631635 + 48631615 48631655 41 AGGATGGAGCAGAGCCCAGCGCCAATTCCGTGTCAGCCCAC AGGATGGAGCAGAGCCCAGTGCCAATTCCGTGTCAGCCCAC < 41bp 0.517175224713564 0.727441683901787 NA NA prediction 0.420532918376446 Functional Gain - SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631635 chr17:48631634 synonymous SNV . 0 20 hm7G_associated_SNPs_28925 0 0 1 0 1 SPATA20 chr17:48631612 3'AG 48631612 Downstream 23bp 26390 chr9 130164957 130164957 1 + G A rs3802366 130164958 + 130164938 130164978 41 TGACTCAGCACAGGCGCCAGGAGGCCATGGCCGCCCTGCGG TGACTCAGCACAGGCGCCAAGAGGCCATGGCCGCCCTGCGG < 41bp 0.531404100775403 0.741669547874547 NA NA prediction 0.420530894198288 Functional Gain - SLC2A8 ENSG00000136856 CDS Human protein_coding chr9:130164958 chr9:130164957 synonymous SNV . 0 20 hm7G_associated_SNPs_28926 0 0 1 0 1 SLC2A8 chr9:130165032 5'GT 130165032 Upstream 76bp 26391 chr22 43820932 43820932 1 + G A COAD 43820933 + 43820913 43820953 41 GTCTGTTTCCAGGTCTGGCGGGGGGCCGGGCTGCGGTGGCG GTCTGTTTCCAGGTCTGGCAGGGGGCCGGGCTGCGGTGGCG < 41bp 0.559526439385506 0.769790412661959 NA NA prediction 0.420527946552906 Functional Gain - MPPED1 ENSG00000186732 CDS Human protein_coding chr22:43820933 chr22:43820932 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28927 0 0 0 0 1 MPPED1 chr22:43820914 3'AG 43820914 Downstream 19bp 26392 chr22 25016436 25016436 1 + C T COAD 25016437 + 25016417 25016457 41 CCCGTGGGCAAGGGCTTGGCGGCAGCCCTGGAAAACAAGCG CCCGTGGGCAAGGGCTTGGTGGCAGCCCTGGAAAACAAGCG < 41bp 0.513635370456917 0.723898242960898 NA NA prediction 0.420525745007961 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25016437 chr22:25016436 nonsynonymous SNV 0.054 1 20 hm7G_associated_SNPs_28929 0 0 1 0 1 GGT1 chr22:25016487 5'GT 25016487 Upstream 52bp 26393 chr19 55019131 55019131 1 + G A BLCA 55019132 + 55019112 55019152 41 TTCCCAGACCCTCCATCTCGGCTGAGCCAGGCACTGTGATC TTCCCAGACCCTCCATCTCAGCTGAGCCAGGCACTGTGATC < 41bp 0.540217080510591 0.750476608883314 NA NA prediction 0.420519056745444 Functional Gain - LAIR2 ENSG00000167618 CDS Human protein_coding chr19:55019132 chr19:55019131 synonymous SNV . 0 20 hm7G_associated_SNPs_28930 0 0 0 2 1 LAIR2 chr19:55019106 3'AG 55019106 Downstream 26bp 26394 chr2 233393337 233393337 1 + C T COAD 233393338 + 233393318 233393358 41 CTGTCACCTATTTCCCCTTCGACTGGCAGAACTGCTCCCTC CTGTCACCTATTTCCCCTTTGACTGGCAGAACTGCTCCCTC < 41bp 0.507808735245048 0.718066407828756 NA NA prediction 0.420515345167416 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233393338 chr2:233393337 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28931 0 0 0 0 1 CHRND chr2:233393366 5'GT 233393366 Upstream 30bp 26395 chr6 43008794 43008794 1 - C T LUAD 43008793 - 43008773 43008813 41 GTGAGTGAGCAGTTCGCCCGGCACATTGACCAGCAGATCCA GTGAGTGAGCAGTTCGCCCAGCACATTGACCAGCAGATCCA < 41bp 0.55610195183338 0.766351804735589 NA NA prediction 0.420499705804419 Functional Gain - CUL7 ENSG00000044090 CDS Human protein_coding chr6:43008793 chr6:43008794 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_28933 0 0 1 0 1 CUL7 chr6:43008813 3'AG 43008813 Downstream 20bp 26396 chr9 71862951 71862951 1 + C T UCEC 71862952 + 71862932 71862972 41 AAGGGATGGATGATGACCCCGAAGACCGCATGTCCTACTTA AAGGGATGGATGATGACCCTGAAGACCGCATGTCCTACTTA < 41bp 0.50206883385028 0.712313582509065 NA NA prediction 0.42048949731757 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71862952 chr9:71862951 synonymous SNV . 0 20 hm7G_associated_SNPs_28935 2 0 1 0 1 TJP2 chr9:71862928 3'AG 71862928 Downstream 24bp 26397 chr19 6182826 6182826 1 + G T SKCM 6182827 + 6182807 6182847 41 ATTGGAGTGCCTCAAATTTGGGAGAAGATACATGAGATGGT ATTGGAGTGCCTCAAATTTTGGAGAAGATACATGAGATGGT < 41bp 0.69517079285561 0.905414963264737 NA NA prediction 0.420488340818253 Functional Gain - ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6182827 chr19:6182826 nonsynonymous SNV 0.905 2 20 hm7G_associated_SNPs_28936 0 0 0 0 1 ACSBG2 chr19:6182762 3'AG 6182762 Downstream 65bp 26398 chr19 17449960 17449960 1 + G T LUSC 17449961 + 17449941 17449981 41 AAGTACGGGCACTGCAGGTGGCCCTGGGTGCACATCTACGA AAGTACGGGCACTGCAGGTTGCCCTGGGTGCACATCTACGA < 41bp 0.346979529753302 0.710243080447139 NA NA prediction 0.420486160894278 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17449961 chr19:17449960 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_28937 0 0 1 0 1 GTPBP3 chr19:17449932 3'AG 17449932 Downstream 29bp 26399 chr4 154544192 154544192 1 + G T UCEC 154544193 + 154544173 154544213 41 GCACCAGCAGCTCCGACGGGGATAAGAAGCCCATGGTGGAC GCACCAGCAGCTCCGACGGTGATAAGAAGCCCATGGTGGAC < 41bp 0.365091972382853 0.710240971547315 NA NA prediction 0.42048194309463 Functional Gain - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154544193 chr4:154544192 synonymous SNV . 0 20 hm7G_associated_SNPs_28941 0 0 0 0 1 TMEM131L chr4:154544235 5'GT 154544235 Upstream 44bp 26400 chr19 11348774 11348774 1 + G A LUSC 11348775 + 11348755 11348795 41 GGGTAAATTCACTGCAGCTGGACTTGCCAAAGATGACCTGG GGGTAAATTCACTGCAGCTAGACTTGCCAAAGATGACCTGG < 41bp 0.506223544949026 0.716463061017814 NA NA prediction 0.420479032137577 Functional Gain - DOCK6 ENSG00000130158 CDS Human protein_coding chr19:11348775 chr19:11348774 synonymous SNV . 0 20 hm7G_associated_SNPs_28943 0 0 0 0 1 DOCK6 chr19:11348733 3'AG 11348733 Downstream 42bp 26401 chr16 67234187 67234187 1 + G A UCEC 67234188 + 67234168 67234208 41 GCCTTGTTCCGCTGGCCTCGGACATGATCTTTGCCAGGGAG GCCTTGTTCCGCTGGCCTCAGACATGATCTTTGCCAGGGAG < 41bp 0.509908864006622 0.720144662811916 NA NA prediction 0.420471597610588 Functional Gain - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234188 chr16:67234187 synonymous SNV . 0 20 hm7G_associated_SNPs_28944 0 0 0 0 2 ELMO3 chr16:67234095 3'AG 67234095 Downstream 93bp 26402 chr16 67234187 67234187 1 + G A UCEC 67234188 + 67234168 67234208 41 GCCTTGTTCCGCTGGCCTCGGACATGATCTTTGCCAGGGAG GCCTTGTTCCGCTGGCCTCAGACATGATCTTTGCCAGGGAG < 41bp 0.509908864006622 0.720144662811916 NA NA prediction 0.420471597610588 Functional Gain - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234188 chr16:67234187 synonymous SNV . 0 20 hm7G_associated_SNPs_28944 0 0 0 0 2 ELMO3 chr16:67234264 5'GT 67234264 Upstream 78bp 26403 chr14 21762912 21762912 1 + C T UCEC 21762913 + 21762893 21762933 41 ACAGTTTCTTTCGACTTCGCGAAGATCACATGTTGGTGAAG ACAGTTTCTTTCGACTTCGTGAAGATCACATGTTGGTGAAG < 41bp 0.505952904711586 0.716184332606913 NA NA prediction 0.420462855790656 Functional Gain - RPGRIP1 ENSG00000092200 CDS Human protein_coding chr14:21762913 chr14:21762912 synonymous SNV . 0 20 hm7G_associated_SNPs_28945 0 0 0 0 2 RPGRIP1 chr14:21762836 3'AG 21762836 Downstream 77bp 26404 chr14 21762912 21762912 1 + C T UCEC 21762913 + 21762893 21762933 41 ACAGTTTCTTTCGACTTCGCGAAGATCACATGTTGGTGAAG ACAGTTTCTTTCGACTTCGTGAAGATCACATGTTGGTGAAG < 41bp 0.505952904711586 0.716184332606913 NA NA prediction 0.420462855790656 Functional Gain - RPGRIP1 ENSG00000092200 CDS Human protein_coding chr14:21762913 chr14:21762912 synonymous SNV . 0 20 hm7G_associated_SNPs_28945 0 0 0 0 2 RPGRIP1 chr14:21762968 5'GT 21762968 Upstream 57bp 26405 chr16 19191849 19191849 1 + C T UCEC 19191850 + 19191830 19191870 41 GTCTACATACAGCCTGACGCGGAGGATTTCGAGTAAGTATC GTCTACATACAGCCTGACGTGGAGGATTTCGAGTAAGTATC < 41bp 0.52236757148347 0.732590767709579 NA NA prediction 0.420446392452219 Functional Gain - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19191850 chr16:19191849 nonsynonymous SNV 0.971 3 20 hm7G_associated_SNPs_28949 0 0 0 0 1 SYT17 chr16:19191861 5'GT 19191861 Upstream 13bp 26406 chr16 89644035 89644035 1 + G T UCEC 89644036 + 89644016 89644056 41 TACTTCGAGGAGGTGCAGAGGCTGCGCTTTGAGGTGTACGA TACTTCGAGGAGGTGCAGATGCTGCGCTTTGAGGTGTACGA < 41bp 0.699650696879707 0.909873239062952 NA NA prediction 0.420445084366489 Functional Gain - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89644036 chr16:89644035 nonsynonymous SNV 0.376 3 20 hm7G_associated_SNPs_28950 0 0 1 0 2 CPNE7 chr16:89643947 3'AG 89643947 Downstream 89bp 26407 chr16 89644035 89644035 1 + G T UCEC 89644036 + 89644016 89644056 41 TACTTCGAGGAGGTGCAGAGGCTGCGCTTTGAGGTGTACGA TACTTCGAGGAGGTGCAGATGCTGCGCTTTGAGGTGTACGA < 41bp 0.699650696879707 0.909873239062952 NA NA prediction 0.420445084366489 Functional Gain - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89644036 chr16:89644035 nonsynonymous SNV 0.376 3 20 hm7G_associated_SNPs_28950 0 0 1 0 2 CPNE7 chr16:89644129 5'GT 89644129 Upstream 95bp 26408 chr17 21826156 21826156 1 + G T ACC 21826157 + 21826137 21826177 41 AGGAGCTCACTGTCCTGCAGGAGAGGAGCAGGCCCACGTCC AGGAGCTCACTGTCCTGCATGAGAGGAGCAGGCCCACGTCC < 41bp 0.421199447718651 0.710219896979489 NA NA prediction 0.420439793958979 Functional Gain - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21826157 chr17:21826156 . . 0 20 hm7G_associated_SNPs_28953 0 0 0 0 1 FAM27E5 chr17:21826096 3'AG 21826096 Downstream 61bp 26409 chr11 122830047 122830047 1 + G T BLCA 122830048 + 122830028 122830068 41 AAAAATCCAACCTATGCTGGGAAAGAAGAAAGTTTACCTGA AAAAATCCAACCTATGCTGTGAAAGAAGAAAGTTTACCTGA < 41bp 0.67284325451733 0.883061346201232 NA NA prediction 0.420436183367804 Functional Gain - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122830048 chr11:122830047 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_28954 0 0 0 0 1 C11orf63 chr11:122829956 3'AG 122829956 Downstream 92bp 26410 chr5 139217290 139217290 1 + G A KIRC 139217291 + 139217271 139217311 41 ATCACGCTCTGGCCACCAGGGCCTCTGACTACAGCAAGAAG ATCACGCTCTGGCCACCAGAGCCTCTGACTACAGCAAGAAG < 41bp 0.50132352948498 0.711539535256771 NA NA prediction 0.420432011543583 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139217291 chr5:139217290 synonymous SNV . 0 20 hm7G_associated_SNPs_28957 0 0 0 0 2 PSD2 chr5:139217210 3'AG 139217210 Downstream 81bp 26411 chr5 139217290 139217290 1 + G A KIRC 139217291 + 139217271 139217311 41 ATCACGCTCTGGCCACCAGGGCCTCTGACTACAGCAAGAAG ATCACGCTCTGGCCACCAGAGCCTCTGACTACAGCAAGAAG < 41bp 0.50132352948498 0.711539535256771 NA NA prediction 0.420432011543583 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139217291 chr5:139217290 synonymous SNV . 0 20 hm7G_associated_SNPs_28957 0 0 0 0 2 PSD2 chr5:139217367 5'GT 139217367 Upstream 78bp 26412 chr7 2751987 2751987 1 + G A rs61745221 2751988 + 2751968 2752008 41 TCTACACCTGGACTCAGGCGGTGGTGGGGACGTGGCCCAGC TCTACACCTGGACTCAGGCAGTGGTGGGGACGTGGCCCAGC < 41bp 0.504072644463128 0.714284245099138 NA NA prediction 0.42042320127202 Functional Gain - AMZ1 ENSG00000174945 CDS Human protein_coding chr7:2751988 chr7:2751987 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_28959 0 0 0 0 1 AMZ1 chr7:2751964 3'AG 2751964 Downstream 24bp 26413 chr2 3660901 3660901 1 + G T LUAD 3660902 + 3660882 3660922 41 GATGTGACTTCTTCCACAGGGGATGCGGGAGAGAAGGGAGA GATGTGACTTCTTCCACAGTGGATGCGGGAGAGAAGGGAGA < 41bp 0.6393582174601 0.849568776085014 NA NA prediction 0.420421117249826 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660902 chr2:3660901 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_28961 0 0 0 0 2 COLEC11 chr2:3660901 3'AG 3660901 Downstream 1bp 26414 chr2 3660901 3660901 1 + G T LUAD 3660902 + 3660882 3660922 41 GATGTGACTTCTTCCACAGGGGATGCGGGAGAGAAGGGAGA GATGTGACTTCTTCCACAGTGGATGCGGGAGAGAAGGGAGA < 41bp 0.6393582174601 0.849568776085014 NA NA prediction 0.420421117249826 Functional Gain - COLEC11 ENSG00000118004 CDS Human protein_coding chr2:3660902 chr2:3660901 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_28961 0 0 0 0 2 COLEC11 chr2:3660972 5'GT 3660972 Upstream 72bp 26415 chr13 24242173 24242173 1 + C T PAAD 24242174 + 24242154 24242194 41 GAGGCCTGCAGCCCCAACCCGGCGACTCTTGGTTGTGGGGT GAGGCCTGCAGCCCCAACCTGGCGACTCTTGGTTGTGGGGT < 41bp 0.517922041634908 0.728131416600079 NA NA prediction 0.420418749930342 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242174 chr13:24242173 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_28963 0 0 1 0 2 TNFRSF19 chr13:24242119 3'AG 24242119 Downstream 55bp 26416 chr13 24242173 24242173 1 + C T PAAD 24242174 + 24242154 24242194 41 GAGGCCTGCAGCCCCAACCCGGCGACTCTTGGTTGTGGGGT GAGGCCTGCAGCCCCAACCTGGCGACTCTTGGTTGTGGGGT < 41bp 0.517922041634908 0.728131416600079 NA NA prediction 0.420418749930342 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24242174 chr13:24242173 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_28963 0 0 1 0 2 TNFRSF19 chr13:24242221 5'GT 24242221 Upstream 49bp 26417 chr20 17434467 17434467 1 + C T UCEC 17434468 + 17434448 17434488 41 ACTGCAACTGCGACGGCTACGCCTCCAGCATGTGGACCATC ACTGCAACTGCGACGGCTATGCCTCCAGCATGTGGACCATC < 41bp 0.524816721211658 0.735025749093454 NA NA prediction 0.420418055763592 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17434468 chr20:17434467 synonymous SNV . 0 20 hm7G_associated_SNPs_28964 0 0 0 0 1 PCSK2 chr20:17434387 3'AG 17434387 Downstream 81bp 26418 chr1 33133834 33133834 1 + G T LGG 33133835 + 33133815 33133855 41 TTTATTCACAGAATTTGGAGGTTTTGGTTCAGTTAGTGGAA TTTATTCACAGAATTTGGATGTTTTGGTTCAGTTAGTGGAA < 41bp 0.396584838316074 0.710205935072208 NA NA prediction 0.420411870144415 Functional Gain - RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33133835 chr1:33133834 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_28966 0 0 1 0 1 RBBP4 chr1:33133826 3'AG 33133826 Downstream 9bp 26419 chr19 35633400 35633400 1 + G A SKCM 35633401 + 35633381 35633421 41 GGGAACCCGATGAAGAGGAGGGAACTTTCCGCAGCTCCATC GGGAACCCGATGAAGAGGAAGGAACTTTCCGCAGCTCCATC < 41bp 0.529953523592906 0.740159451494062 NA NA prediction 0.420411855802312 Functional Gain - FXYD1 ENSG00000266964 CDS Human protein_coding chr19:35633401 chr19:35633400 synonymous SNV . 0 20 hm7G_associated_SNPs_28967 0 0 1 0 2 FXYD1 chr19:35633376 3'AG 35633376 Downstream 25bp 26420 chr19 35633400 35633400 1 + G A SKCM 35633401 + 35633381 35633421 41 GGGAACCCGATGAAGAGGAGGGAACTTTCCGCAGCTCCATC GGGAACCCGATGAAGAGGAAGGAACTTTCCGCAGCTCCATC < 41bp 0.529953523592906 0.740159451494062 NA NA prediction 0.420411855802312 Functional Gain - FXYD1 ENSG00000266964 CDS Human protein_coding chr19:35633401 chr19:35633400 synonymous SNV . 0 20 hm7G_associated_SNPs_28967 0 0 1 0 2 FXYD1 chr19:35633425 5'GT 35633425 Upstream 26bp 26421 chr19 35550813 35550813 1 + C T UCEC 35550814 + 35550794 35550834 41 GAGCTGGACGTGCGAACGGCGGGCGCCAATGGCACGTCGGG GAGCTGGACGTGCGAACGGTGGGCGCCAATGGCACGTCGGG < 41bp 0.501716107563881 0.711922030401936 NA NA prediction 0.420411845676109 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35550814 chr19:35550813 nonsynonymous SNV 0.780 0 20 hm7G_associated_SNPs_28968 0 0 1 0 2 HPN chr19:35550778 3'AG 35550778 Downstream 36bp 26422 chr19 35550813 35550813 1 + C T UCEC 35550814 + 35550794 35550834 41 GAGCTGGACGTGCGAACGGCGGGCGCCAATGGCACGTCGGG GAGCTGGACGTGCGAACGGTGGGCGCCAATGGCACGTCGGG < 41bp 0.501716107563881 0.711922030401936 NA NA prediction 0.420411845676109 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35550814 chr19:35550813 nonsynonymous SNV 0.780 0 20 hm7G_associated_SNPs_28968 0 0 1 0 2 HPN chr19:35550900 5'GT 35550900 Upstream 88bp 26423 chr3 14922108 14922108 1 + C T UCEC 14922109 + 14922089 14922129 41 AGTCCAGAGCCCTTGTCATCGCACAGGAACTGCTATCTTCA AGTCCAGAGCCCTTGTCATTGCACAGGAACTGCTATCTTCA < 41bp 0.511050393413185 0.721253763127246 NA NA prediction 0.420406739428123 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14922109 chr3:14922108 synonymous SNV . 0 20 hm7G_associated_SNPs_28969 0 0 0 0 1 FGD5 chr3:14922079 3'AG 14922079 Downstream 30bp 26424 chr19 45377219 45377219 1 + C T UCEC 45377220 + 45377200 45377240 41 ATGATGACAACTGGTACCTCGGCCGTACTGATGCCACCCTG ATGATGACAACTGGTACCTTGGCCGTACTGATGCCACCCTG < 41bp 0.514626742933388 0.724828972290414 NA NA prediction 0.420404458714052 Functional Gain - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45377220 chr19:45377219 synonymous SNV . 0 20 hm7G_associated_SNPs_28970 0 0 1 0 2 NECTIN2 chr19:45377173 3'AG 45377173 Downstream 47bp 26425 chr19 45377219 45377219 1 + C T UCEC 45377220 + 45377200 45377240 41 ATGATGACAACTGGTACCTCGGCCGTACTGATGCCACCCTG ATGATGACAACTGGTACCTTGGCCGTACTGATGCCACCCTG < 41bp 0.514626742933388 0.724828972290414 NA NA prediction 0.420404458714052 Functional Gain - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45377220 chr19:45377219 synonymous SNV . 0 20 hm7G_associated_SNPs_28970 0 0 1 0 2 NECTIN2 chr19:45377290 5'GT 45377290 Upstream 72bp 26426 chr1 50642804 50642804 1 + G T LGG 50642805 + 50642785 50642825 41 TTAACTATATTGATCCAAAGGATGCAGAGAAAGCCATCAAC TTAACTATATTGATCCAAATGATGCAGAGAAAGCCATCAAC < 41bp 0.686355351218261 0.896557083019862 NA NA prediction 0.420403463603204 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50642805 chr1:50642804 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_28971 0 0 0 0 2 ELAVL4 chr1:50642761 3'AG 50642761 Downstream 44bp 26427 chr1 50642804 50642804 1 + G T LGG 50642805 + 50642785 50642825 41 TTAACTATATTGATCCAAAGGATGCAGAGAAAGCCATCAAC TTAACTATATTGATCCAAATGATGCAGAGAAAGCCATCAAC < 41bp 0.686355351218261 0.896557083019862 NA NA prediction 0.420403463603204 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50642805 chr1:50642804 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_28971 0 0 0 0 2 ELAVL4 chr1:50642864 5'GT 50642864 Upstream 61bp 26428 chr20 44470568 44470568 1 - C T STAD 44470567 - 44470547 44470587 41 CGGGGGCTGGTCCATGGGCGGCTGTGGCGTCAGGATGGAGT CGGGGGCTGGTCCATGGGCAGCTGTGGCGTCAGGATGGAGT < 41bp 0.541333142352929 0.751534025681429 NA NA prediction 0.420401766657001 Functional Gain - ACOT8 ENSG00000101473 CDS Human protein_coding chr20:44470567 chr20:44470568 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_28972 0 0 1 0 1 ACOT8 chr20:44470595 3'AG 44470595 Downstream 28bp 26429 chr7 107334883 107334883 1 + C T UCEC 107334884 + 107334864 107334904 41 CTGCTGCGATTGTGATGATCGCCATTCTTGCCCTGGGGAAG CTGCTGCGATTGTGATGATTGCCATTCTTGCCCTGGGGAAG < 41bp 0.509598749153077 0.719798761538976 NA NA prediction 0.420400024771798 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107334884 chr7:107334883 synonymous SNV . 0 20 hm7G_associated_SNPs_28973 1 0 0 0 2 SLC26A4 chr7:107334848 3'AG 107334848 Downstream 36bp 26430 chr7 107334883 107334883 1 + C T UCEC 107334884 + 107334864 107334904 41 CTGCTGCGATTGTGATGATCGCCATTCTTGCCCTGGGGAAG CTGCTGCGATTGTGATGATTGCCATTCTTGCCCTGGGGAAG < 41bp 0.509598749153077 0.719798761538976 NA NA prediction 0.420400024771798 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107334884 chr7:107334883 synonymous SNV . 0 20 hm7G_associated_SNPs_28973 1 0 0 0 2 SLC26A4 chr7:107334925 5'GT 107334925 Upstream 43bp 26431 chr1 24663602 24663602 1 + C T HNSC 24663603 + 24663583 24663623 41 GATATCCTGAAAACCTCCCCGGAACCCCCATGTCCAGAGGA GATATCCTGAAAACCTCCCTGGAACCCCCATGTCCAGAGGA < 41bp 0.508761692024001 0.718959305259498 NA NA prediction 0.420395226470994 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24663603 chr1:24663602 nonsynonymous SNV 0.794 0 20 hm7G_associated_SNPs_28974 0 0 0 0 2 GRHL3 chr1:24663568 3'AG 24663568 Downstream 35bp 26432 chr1 24663602 24663602 1 + C T HNSC 24663603 + 24663583 24663623 41 GATATCCTGAAAACCTCCCCGGAACCCCCATGTCCAGAGGA GATATCCTGAAAACCTCCCTGGAACCCCCATGTCCAGAGGA < 41bp 0.508761692024001 0.718959305259498 NA NA prediction 0.420395226470994 Functional Gain - GRHL3 ENSG00000158055 CDS Human protein_coding chr1:24663603 chr1:24663602 nonsynonymous SNV 0.794 0 20 hm7G_associated_SNPs_28974 0 0 0 0 2 GRHL3 chr1:24663641 5'GT 24663641 Upstream 40bp 26433 chr13 27255211 27255211 1 + C T UCEC 27255212 + 27255192 27255232 41 TCACATGCATCGGACGTTACGGATTACTCTTACCCGGCTAC TCACATGCATCGGACGTTATGGATTACTCTTACCCGGCTAC < 41bp 0.520016159527221 0.730213113674586 NA NA prediction 0.420393908294729 Functional Gain - WASF3 ENSG00000132970 CDS Human protein_coding chr13:27255212 chr13:27255211 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_28975 0 0 1 0 1 WASF3 chr13:27255191 3'AG 27255191 Downstream 21bp 26434 chr4 8214511 8214511 1 + C T rs139277479 8214512 + 8214492 8214532 41 GACCCTCCGGGGCCAGCTCCGCCTGCTGGAGAATGATAGCC GACCCTCCGGGGCCAGCTCTGCCTGCTGGAGAATGATAGCC < 41bp 0.507688732815461 0.717882642817888 NA NA prediction 0.420387820004853 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8214512 chr4:8214511 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_28977 0 0 1 0 2 SH3TC1 chr4:8214428 3'AG 8214428 Downstream 84bp 26435 chr4 8214511 8214511 1 + C T rs139277479 8214512 + 8214492 8214532 41 GACCCTCCGGGGCCAGCTCCGCCTGCTGGAGAATGATAGCC GACCCTCCGGGGCCAGCTCTGCCTGCTGGAGAATGATAGCC < 41bp 0.507688732815461 0.717882642817888 NA NA prediction 0.420387820004853 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8214512 chr4:8214511 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_28977 0 0 1 0 2 SH3TC1 chr4:8214555 5'GT 8214555 Upstream 45bp 26436 chr20 2988017 2988017 1 + C T UCEC 2988018 + 2987998 2988038 41 TCTAGAGTCCACCTGACACCGGTTGAAGGGGTTCCAGATTC TCTAGAGTCCACCTGACACTGGTTGAAGGGGTTCCAGATTC < 41bp 0.500660375246323 0.710852760046547 NA NA prediction 0.420384769600447 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:2988018 chr20:2988017 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_28978 0 0 1 0 2 PTPRA chr20:2987990 3'AG 2987990 Downstream 28bp 26437 chr20 2988017 2988017 1 + C T UCEC 2988018 + 2987998 2988038 41 TCTAGAGTCCACCTGACACCGGTTGAAGGGGTTCCAGATTC TCTAGAGTCCACCTGACACTGGTTGAAGGGGTTCCAGATTC < 41bp 0.500660375246323 0.710852760046547 NA NA prediction 0.420384769600447 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:2988018 chr20:2988017 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_28978 0 0 1 0 2 PTPRA chr20:2988066 5'GT 2988066 Upstream 50bp 26438 chr20 2376022 2376022 1 + C T UCEC 2376023 + 2376003 2376043 41 CATCAGGCTTTCCTCTCACCGCAAACACAGCAACCGGAGGC CATCAGGCTTTCCTCTCACTGCAAACACAGCAACCGGAGGC < 41bp 0.515161570160681 0.725349607945393 NA NA prediction 0.420376075569426 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2376023 chr20:2376022 nonsynonymous SNV 0.086 2 20 hm7G_associated_SNPs_28980 0 0 0 0 1 TGM6 chr20:2376082 5'GT 2376082 Upstream 61bp 26439 chr3 9783100 9783100 1 + C T HNSC 9783101 + 9783081 9783121 41 CGTGGAATTGATCCGCAAGCGGGAAAAACTCAAAAGGGAGA CGTGGAATTGATCCGCAAGTGGGAAAAACTCAAAAGGGAGA < 41bp 0.495110666159698 0.710186944614433 NA NA prediction 0.420373889228867 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9783101 chr3:9783100 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_28981 0 0 0 0 1 BRPF1 chr3:9783123 5'GT 9783123 Upstream 24bp 26440 chr1 27676975 27676975 1 + G A GBM 27676976 + 27676956 27676996 41 GTTTTCAACGAGACTCTCCGGGTGAGGCTGTGACCACGATG GTTTTCAACGAGACTCTCCAGGTGAGGCTGTGACCACGATG < 41bp 0.547731693783137 0.757918509404068 NA NA prediction 0.420373631241862 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27676976 chr1:27676975 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_28983 0 0 1 0 2 SYTL1 chr1:27676880 3'AG 27676880 Downstream 96bp 26441 chr1 27676975 27676975 1 + G A GBM 27676976 + 27676956 27676996 41 GTTTTCAACGAGACTCTCCGGGTGAGGCTGTGACCACGATG GTTTTCAACGAGACTCTCCAGGTGAGGCTGTGACCACGATG < 41bp 0.547731693783137 0.757918509404068 NA NA prediction 0.420373631241862 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27676976 chr1:27676975 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_28983 0 0 1 0 2 SYTL1 chr1:27676976 5'GT 27676976 Upstream 2bp 26442 chr9 140328512 140328512 1 + G A UCEC 140328513 + 140328493 140328533 41 GCTTCCGACAGGGGGACACGGTGGACGTCCTGTGTGAAGGT GCTTCCGACAGGGGGACACAGTGGACGTCCTGTGTGAAGGT < 41bp 0.507729176618437 0.717912239717839 NA NA prediction 0.420366126198806 Functional Gain - NOXA1 ENSG00000188747 CDS Human protein_coding chr9:140328513 chr9:140328512 synonymous SNV . 0 20 hm7G_associated_SNPs_28985 0 0 0 0 2 NOXA1 chr9:140328417 3'AG 140328417 Downstream 96bp 26443 chr9 140328512 140328512 1 + G A UCEC 140328513 + 140328493 140328533 41 GCTTCCGACAGGGGGACACGGTGGACGTCCTGTGTGAAGGT GCTTCCGACAGGGGGACACAGTGGACGTCCTGTGTGAAGGT < 41bp 0.507729176618437 0.717912239717839 NA NA prediction 0.420366126198806 Functional Gain - NOXA1 ENSG00000188747 CDS Human protein_coding chr9:140328513 chr9:140328512 synonymous SNV . 0 20 hm7G_associated_SNPs_28985 0 0 0 0 2 NOXA1 chr9:140328531 5'GT 140328531 Upstream 20bp 26444 chr6 397164 397164 1 + G A PRAD 397165 + 397145 397185 41 GCTGGAGGGACTACGTCCCGGATCAGCCACACCCGGAAATC GCTGGAGGGACTACGTCCCAGATCAGCCACACCCGGAAATC < 41bp 0.517090200943598 0.727272219228127 NA NA prediction 0.420364036569058 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:397165 chr6:397164 synonymous SNV . 0 20 hm7G_associated_SNPs_28986 0 0 0 0 3 IRF4 chr6:397108 3'AG 397108 Downstream 57bp 26445 chr6 397164 397164 1 + G A PRAD 397165 + 397145 397185 41 GCTGGAGGGACTACGTCCCGGATCAGCCACACCCGGAAATC GCTGGAGGGACTACGTCCCAGATCAGCCACACCCGGAAATC < 41bp 0.517090200943598 0.727272219228127 NA NA prediction 0.420364036569058 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:397165 chr6:397164 synonymous SNV . 0 20 hm7G_associated_SNPs_28986 0 0 0 0 3 IRF4 chr6:397111 3'AG 397111 Downstream 54bp 26446 chr6 397164 397164 1 + G A PRAD 397165 + 397145 397185 41 GCTGGAGGGACTACGTCCCGGATCAGCCACACCCGGAAATC GCTGGAGGGACTACGTCCCAGATCAGCCACACCCGGAAATC < 41bp 0.517090200943598 0.727272219228127 NA NA prediction 0.420364036569058 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:397165 chr6:397164 synonymous SNV . 0 20 hm7G_associated_SNPs_28986 0 0 0 0 3 IRF4 chr6:397252 5'GT 397252 Upstream 89bp 26447 chr12 99119243 99119243 1 + C T rs529534371 99119244 + 99119224 99119264 41 ATGAATTGAGGGGCCACAACGGCTGTGTGCGCTGCTCTGCC ATGAATTGAGGGGCCACAATGGCTGTGTGCGCTGCTCTGCC < 41bp 0.50790941777982 0.718085494617629 NA NA prediction 0.42035215367562 Functional Gain - APAF1 ENSG00000120868 CDS Human protein_coding chr12:99119244 chr12:99119243 synonymous SNV . 0 20 hm7G_associated_SNPs_28991 0 0 1 0 1 APAF1 chr12:99119193 3'AG 99119193 Downstream 51bp 26448 chr7 20685435 20685435 1 + G T LUAD 20685436 + 20685416 20685456 41 ATTCCAAAGCTGGGGCTGTGGCAGAAGAAGTCTTGTCATCA ATTCCAAAGCTGGGGCTGTTGCAGAAGAAGTCTTGTCATCA < 41bp 0.372589486956 0.710170905674283 NA NA prediction 0.420341811348566 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20685436 chr7:20685435 synonymous SNV . 0 20 hm7G_associated_SNPs_28993 0 0 0 0 2 ABCB5 chr7:20685379 3'AG 20685379 Downstream 57bp 26449 chr7 20685435 20685435 1 + G T LUAD 20685436 + 20685416 20685456 41 ATTCCAAAGCTGGGGCTGTGGCAGAAGAAGTCTTGTCATCA ATTCCAAAGCTGGGGCTGTTGCAGAAGAAGTCTTGTCATCA < 41bp 0.372589486956 0.710170905674283 NA NA prediction 0.420341811348566 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20685436 chr7:20685435 synonymous SNV . 0 20 hm7G_associated_SNPs_28993 0 0 0 0 2 ABCB5 chr7:20685503 5'GT 20685503 Upstream 69bp 26450 chr11 592657 592657 1 + C T GBM 592658 + 592638 592678 41 AGGACAGGCTTTTGCTCTGCGACGGCTGCGATGCGGGGTAA AGGACAGGCTTTTGCTCTGTGACGGCTGCGATGCGGGGTAA < 41bp 0.506971406836068 0.71713818688363 NA NA prediction 0.420333560095123 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:592658 chr11:592657 synonymous SNV . 0 20 hm7G_associated_SNPs_28995 0 0 1 0 2 PHRF1 chr11:592559 3'AG 592559 Downstream 99bp 26451 chr11 592657 592657 1 + C T GBM 592658 + 592638 592678 41 AGGACAGGCTTTTGCTCTGCGACGGCTGCGATGCGGGGTAA AGGACAGGCTTTTGCTCTGTGACGGCTGCGATGCGGGGTAA < 41bp 0.506971406836068 0.71713818688363 NA NA prediction 0.420333560095123 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:592658 chr11:592657 synonymous SNV . 0 20 hm7G_associated_SNPs_28995 0 0 1 0 2 PHRF1 chr11:592674 5'GT 592674 Upstream 18bp 26452 chr6 43109479 43109479 1 + C T BLCA 43109480 + 43109460 43109500 41 CCCGGGTGACTCGAGATGACGCTGGCAACTACACTTGCATT CCCGGGTGACTCGAGATGATGCTGGCAACTACACTTGCATT < 41bp 0.497621827306871 0.710166058365458 NA NA prediction 0.420332116730916 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43109480 chr6:43109479 synonymous SNV . 0 20 hm7G_associated_SNPs_28997 0 0 1 0 2 PTK7 chr6:43109406 3'AG 43109406 Downstream 74bp 26453 chr6 43109479 43109479 1 + C T BLCA 43109480 + 43109460 43109500 41 CCCGGGTGACTCGAGATGACGCTGGCAACTACACTTGCATT CCCGGGTGACTCGAGATGATGCTGGCAACTACACTTGCATT < 41bp 0.497621827306871 0.710166058365458 NA NA prediction 0.420332116730916 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43109480 chr6:43109479 synonymous SNV . 0 20 hm7G_associated_SNPs_28997 0 0 1 0 2 PTK7 chr6:43109555 5'GT 43109555 Upstream 77bp 26454 chr9 136305585 136305585 1 + G A BLCA 136305586 + 136305566 136305606 41 GTGGCCCTCACCGAGGACCGGCTGCCCCGCCTGGAGGAGAT GTGGCCCTCACCGAGGACCAGCTGCCCCGCCTGGAGGAGAT < 41bp 0.508497652654662 0.718657470590676 NA NA prediction 0.420319635872028 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136305586 chr9:136305585 nonsynonymous SNV 0.758 0 20 hm7G_associated_SNPs_28999 0 0 0 0 1 ADAMTS13 chr9:136305646 5'GT 136305646 Upstream 62bp 26455 chr2 234173576 234173576 1 + C T UCEC 234173577 + 234173557 234173597 41 ACTATCTCTGACCTGGAGACGGAGTGCCTAGACCTGCGCAC ACTATCTCTGACCTGGAGATGGAGTGCCTAGACCTGCGCAC < 41bp 0.5130962220503 0.723253197018605 NA NA prediction 0.42031394993661 Functional Gain - ATG16L1 ENSG00000085978 CDS Human protein_coding chr2:234173577 chr2:234173576 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_29000 0 0 1 0 1 ATG16L1 chr2:234173538 3'AG 234173538 Downstream 39bp 26456 chr20 39795165 39795165 1 + C T UCEC 39795166 + 39795146 39795186 41 GGCTGAGCACATGCTAATGCGCGTCCCTCGTGATGGGGCCT GGCTGAGCACATGCTAATGTGCGTCCCTCGTGATGGGGCCT < 41bp 0.5147558272744 0.724910722557652 NA NA prediction 0.420309790566503 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795166 chr20:39795165 nonsynonymous SNV 0.969 5 20 hm7G_associated_SNPs_29001 0 0 1 0 2 PLCG1 chr20:39795116 3'AG 39795116 Downstream 50bp 26457 chr20 39795165 39795165 1 + C T UCEC 39795166 + 39795146 39795186 41 GGCTGAGCACATGCTAATGCGCGTCCCTCGTGATGGGGCCT GGCTGAGCACATGCTAATGTGCGTCCCTCGTGATGGGGCCT < 41bp 0.5147558272744 0.724910722557652 NA NA prediction 0.420309790566503 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795166 chr20:39795165 nonsynonymous SNV 0.969 5 20 hm7G_associated_SNPs_29001 0 0 1 0 2 PLCG1 chr20:39795235 5'GT 39795235 Upstream 71bp 26458 chr11 64023262 64023262 1 + C T COAD 64023263 + 64023243 64023283 41 CCTGAACAAGCTGTGTCTGCGGCCGGACATTGACAAGATCC CCTGAACAAGCTGTGTCTGTGGCCGGACATTGACAAGATCC < 41bp 0.525800325582213 0.73595462201481 NA NA prediction 0.420308592865196 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64023263 chr11:64023262 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_29002 0 0 1 0 1 PLCB3 chr11:64023293 5'GT 64023293 Upstream 32bp 26459 chr2 11750868 11750868 1 + C T UCEC 11750869 + 11750849 11750889 41 TTGTTCTCGTGCAGCACTACGCGGCCGCCCTGATGGCCGTA TTGTTCTCGTGCAGCACTATGCGGCCGCCCTGATGGCCGTA < 41bp 0.496364991935003 0.710151756690584 NA NA prediction 0.420303513381168 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11750869 chr2:11750868 synonymous SNV . 0 20 hm7G_associated_SNPs_29003 0 0 1 0 1 GREB1 chr2:11750814 3'AG 11750814 Downstream 55bp 26460 chr11 65561542 65561542 1 + G A UCEC 65561543 + 65561523 65561563 41 CACAGCCCTACCGGGAGCCGGAACCCTCTGTGGCCGAACCC CACAGCCCTACCGGGAGCCAGAACCCTCTGTGGCCGAACCC < 41bp 0.54354368637879 0.753693276799477 NA NA prediction 0.420299180841373 Functional Gain - OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65561543 chr11:65561542 synonymous SNV . 0 20 hm7G_associated_SNPs_29005 0 0 0 0 1 OVOL1 chr11:65561502 3'AG 65561502 Downstream 41bp 26461 chr6 159086478 159086478 1 + G A rs140305892 159086479 + 159086459 159086499 41 GGAAAGGAGCGAAGAACACGGACTGGGAGCACAAAGAGAAG GGAAAGGAGCGAAGAACACAGACTGGGAGCACAAAGAGAAG < 41bp 0.509347465571571 0.719496410452957 NA NA prediction 0.420297889762772 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086479 chr6:159086478 synonymous SNV . 0 20 hm7G_associated_SNPs_29006 0 0 0 0 2 SYTL3 chr6:159086419 3'AG 159086419 Downstream 60bp 26462 chr6 159086478 159086478 1 + G A rs140305892 159086479 + 159086459 159086499 41 GGAAAGGAGCGAAGAACACGGACTGGGAGCACAAAGAGAAG GGAAAGGAGCGAAGAACACAGACTGGGAGCACAAAGAGAAG < 41bp 0.509347465571571 0.719496410452957 NA NA prediction 0.420297889762772 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086479 chr6:159086478 synonymous SNV . 0 20 hm7G_associated_SNPs_29006 0 0 0 0 2 SYTL3 chr6:159086427 3'AG 159086427 Downstream 52bp 26463 chr16 89245912 89245912 1 + G A rs199879102 89245913 + 89245893 89245933 41 CCTGCCCTGAGCCGCGTGCGGAGGGCCTGGGTCATCCCCCC CCTGCCCTGAGCCGCGTGCAGAGGGCCTGGGTCATCCCCCC < 41bp 0.550915384822811 0.761061281263059 NA NA prediction 0.420291792880496 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89245913 chr16:89245912 nonsynonymous SNV 0.970 2 20 hm7G_associated_SNPs_29007 0 0 0 0 2 CDH15 chr16:89245824 3'AG 89245824 Downstream 89bp 26464 chr16 89245912 89245912 1 + G A rs199879102 89245913 + 89245893 89245933 41 CCTGCCCTGAGCCGCGTGCGGAGGGCCTGGGTCATCCCCCC CCTGCCCTGAGCCGCGTGCAGAGGGCCTGGGTCATCCCCCC < 41bp 0.550915384822811 0.761061281263059 NA NA prediction 0.420291792880496 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89245913 chr16:89245912 nonsynonymous SNV 0.970 2 20 hm7G_associated_SNPs_29007 0 0 0 0 2 CDH15 chr16:89245982 5'GT 89245982 Upstream 71bp 26465 chr20 57896132 57896132 1 + G A rs187049336 57896133 + 57896113 57896153 41 TCCGGGGCAAGAGGTCTGCGGGGCCACTTCCAGGGAATCTG TCCGGGGCAAGAGGTCTGCAGGGCCACTTCCAGGGAATCTG < 41bp 0.487717427089604 0.710142905652312 NA NA prediction 0.420285811304625 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896133 chr20:57896132 synonymous SNV . 0 20 hm7G_associated_SNPs_29008 2 0 0 0 1 EDN3 chr20:57896072 3'AG 57896072 Downstream 61bp 26466 chr1 31899543 31899543 1 + C T LGG 31899544 + 31899524 31899564 41 TTCTACTTGCTGTCGATCGCGGCCGTGGCGCTGATGTTCAT TTCTACTTGCTGTCGATCGTGGCCGTGGCGCTGATGTTCAT < 41bp 0.502860677664843 0.713003297559186 NA NA prediction 0.420285239788687 Functional Gain - SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31899544 chr1:31899543 nonsynonymous SNV 0.010 0 20 hm7G_associated_SNPs_29009 0 0 1 0 1 SERINC2 chr1:31899501 3'AG 31899501 Downstream 43bp 26467 chr2 223339442 223339442 1 + G T BLCA 223339443 + 223339423 223339463 41 GAAGATTGATCATCATATGGGTTGTAAGTATTATTACTACT GAAGATTGATCATCATATGTGTTGTAAGTATTATTACTACT < 41bp 0.511919421802893 0.722060778801042 NA NA prediction 0.420282713996298 Functional Gain - SGPP2 ENSG00000163082 CDS Human protein_coding chr2:223339443 chr2:223339442 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29010 0 0 0 0 1 SGPP2 chr2:223339445 5'GT 223339445 Upstream 4bp 26468 chr1 221055681 221055681 1 + G A UCEC 221055682 + 221055662 221055702 41 CGGCGATGCTGGGCCTCACGGACGCACAGGTAAGGCAGTTC CGGCGATGCTGGGCCTCACAGACGCACAGGTAAGGCAGTTC < 41bp 0.529584468597063 0.739724695710113 NA NA prediction 0.4202804542261 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221055682 chr1:221055681 synonymous SNV . 0 20 hm7G_associated_SNPs_29012 0 0 1 0 1 HLX chr1:221055690 5'GT 221055690 Upstream 10bp 26469 chr4 2502402 2502402 1 + G T UCEC 2502403 + 2502383 2502423 41 AAGCTGGAGATGAAATTGTGGACCTCACTTGTGAATCTTTA AAGCTGGAGATGAAATTGTTGACCTCACTTGTGAATCTTTA < 41bp 0.368155200491136 0.710138982378075 NA NA prediction 0.42027796475615 Functional Gain - RNF4 ENSG00000063978 CDS Human protein_coding chr4:2502403 chr4:2502402 synonymous SNV . 0 20 hm7G_associated_SNPs_29013 0 0 1 0 2 RNF4 chr4:2502386 3'AG 2502386 Downstream 17bp 26470 chr4 2502402 2502402 1 + G T UCEC 2502403 + 2502383 2502423 41 AAGCTGGAGATGAAATTGTGGACCTCACTTGTGAATCTTTA AAGCTGGAGATGAAATTGTTGACCTCACTTGTGAATCTTTA < 41bp 0.368155200491136 0.710138982378075 NA NA prediction 0.42027796475615 Functional Gain - RNF4 ENSG00000063978 CDS Human protein_coding chr4:2502403 chr4:2502402 synonymous SNV . 0 20 hm7G_associated_SNPs_29013 0 0 1 0 2 RNF4 chr4:2502465 5'GT 2502465 Upstream 64bp 26471 chr9 77277449 77277449 1 + G T LUSC 77277450 + 77277430 77277470 41 CTCACGCCATCCAATACGTGGTGGAGTTTGCAAAGCGGATA CTCACGCCATCCAATACGTTGTGGAGTTTGCAAAGCGGATA < 41bp 0.374868082723021 0.71013888526115 NA NA prediction 0.4202777705223 Functional Gain - RORB ENSG00000198963 CDS Human protein_coding chr9:77277450 chr9:77277449 synonymous SNV . 0 20 hm7G_associated_SNPs_29014 0 0 0 0 2 RORB chr9:77277390 3'AG 77277390 Downstream 60bp 26472 chr9 77277449 77277449 1 + G T LUSC 77277450 + 77277430 77277470 41 CTCACGCCATCCAATACGTGGTGGAGTTTGCAAAGCGGATA CTCACGCCATCCAATACGTTGTGGAGTTTGCAAAGCGGATA < 41bp 0.374868082723021 0.71013888526115 NA NA prediction 0.4202777705223 Functional Gain - RORB ENSG00000198963 CDS Human protein_coding chr9:77277450 chr9:77277449 synonymous SNV . 0 20 hm7G_associated_SNPs_29014 0 0 0 0 2 RORB chr9:77277522 5'GT 77277522 Upstream 74bp 26473 chr13 46287412 46287412 1 + G A SKCM 46287413 + 46287393 46287433 41 CCCGGCTGAGCCGCAGGATGGCGAGCCAGCACTCCTATCCA CCCGGCTGAGCCGCAGGATAGCGAGCCAGCACTCCTATCCA < 41bp 0.480206988595611 0.71013720999557 NA NA prediction 0.42027441999114 Functional Gain - SPERT ENSG00000174015 CDS Human protein_coding chr13:46287413 chr13:46287412 nonsynonymous SNV 0.018 0 20 hm7G_associated_SNPs_29017 0 0 0 0 1 SPERT chr13:46287317 3'AG 46287317 Downstream 96bp 26474 chr20 33501951 33501951 1 + G A SKCM 33501952 + 33501932 33501972 41 TGAAGGAGCTGGCTGACGAGGCCCTGCAGAAGTGTCAGGAG TGAAGGAGCTGGCTGACGAAGCCCTGCAGAAGTGTCAGGAG < 41bp 0.527864850479293 0.737998195689268 NA NA prediction 0.42026669041995 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33501952 chr20:33501951 synonymous SNV . 0 20 hm7G_associated_SNPs_29020 0 0 1 0 2 ACSS2 chr20:33501899 3'AG 33501899 Downstream 53bp 26475 chr20 33501951 33501951 1 + G A SKCM 33501952 + 33501932 33501972 41 TGAAGGAGCTGGCTGACGAGGCCCTGCAGAAGTGTCAGGAG TGAAGGAGCTGGCTGACGAAGCCCTGCAGAAGTGTCAGGAG < 41bp 0.527864850479293 0.737998195689268 NA NA prediction 0.42026669041995 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33501952 chr20:33501951 synonymous SNV . 0 20 hm7G_associated_SNPs_29020 0 0 1 0 2 ACSS2 chr20:33501974 5'GT 33501974 Upstream 24bp 26476 chr10 101147663 101147663 1 + C T GBM 101147664 + 101147644 101147684 41 ACATGGAGGCCTTCACAGACGGGGACTCCACTAAGGCCCCC ACATGGAGGCCTTCACAGATGGGGACTCCACTAAGGCCCCC < 41bp 0.521725454509609 0.731855812511963 NA NA prediction 0.420260716004707 Functional Gain - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101147664 chr10:101147663 synonymous SNV . 0 20 hm7G_associated_SNPs_29023 0 0 1 0 2 CNNM1 chr10:101147577 3'AG 101147577 Downstream 87bp 26477 chr10 101147663 101147663 1 + C T GBM 101147664 + 101147644 101147684 41 ACATGGAGGCCTTCACAGACGGGGACTCCACTAAGGCCCCC ACATGGAGGCCTTCACAGATGGGGACTCCACTAAGGCCCCC < 41bp 0.521725454509609 0.731855812511963 NA NA prediction 0.420260716004707 Functional Gain - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101147664 chr10:101147663 synonymous SNV . 0 20 hm7G_associated_SNPs_29023 0 0 1 0 2 CNNM1 chr10:101147760 5'GT 101147760 Upstream 98bp 26478 chr3 38163174 38163174 1 + G T ESCA 38163175 + 38163155 38163195 41 CTGCAGCTCTCCACCAGCTGGGTGGACTTTGGGACCTGCTT CTGCAGCTCTCCACCAGCTTGGTGGACTTTGGGACCTGCTT < 41bp 0.360968430975491 0.710128394345812 NA NA prediction 0.420256788691624 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38163175 chr3:38163174 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_29024 0 0 0 0 2 DLEC1 chr3:38163119 3'AG 38163119 Downstream 56bp 26479 chr3 38163174 38163174 1 + G T ESCA 38163175 + 38163155 38163195 41 CTGCAGCTCTCCACCAGCTGGGTGGACTTTGGGACCTGCTT CTGCAGCTCTCCACCAGCTTGGTGGACTTTGGGACCTGCTT < 41bp 0.360968430975491 0.710128394345812 NA NA prediction 0.420256788691624 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38163175 chr3:38163174 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_29024 0 0 0 0 2 DLEC1 chr3:38163272 5'GT 38163272 Upstream 99bp 26480 chr16 1392236 1392236 1 + C T rs2235631 1392237 + 1392217 1392257 41 ACGGGACAGCAGGACCCACCGAGGACCACACCGATGACTTC ACGGGACAGCAGGACCCACTGAGGACCACACCGATGACTTC < 41bp 0.507136534799328 0.717262911917384 NA NA prediction 0.420252754236113 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392237 chr16:1392236 synonymous SNV . 0 20 hm7G_associated_SNPs_29025 0 0 0 0 2 BAIAP3 chr16:1392182 3'AG 1392182 Downstream 55bp 26481 chr16 1392236 1392236 1 + C T rs2235631 1392237 + 1392217 1392257 41 ACGGGACAGCAGGACCCACCGAGGACCACACCGATGACTTC ACGGGACAGCAGGACCCACTGAGGACCACACCGATGACTTC < 41bp 0.507136534799328 0.717262911917384 NA NA prediction 0.420252754236113 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392237 chr16:1392236 synonymous SNV . 0 20 hm7G_associated_SNPs_29025 0 0 0 0 2 BAIAP3 chr16:1392284 5'GT 1392284 Upstream 49bp 26482 chr20 33587596 33587596 1 + G A rs80109502 33587597 + 33587577 33587617 41 CTGCTCTGTATCCACAGGGGGCCCTGGAGCTGGAGGAGACC CTGCTCTGTATCCACAGGGAGCCCTGGAGCTGGAGGAGACC < 41bp 0.536243030461801 0.746366895928125 NA NA prediction 0.420247730932648 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33587597 chr20:33587596 synonymous SNV . 0 20 hm7G_associated_SNPs_29026 0 0 0 0 1 MYH7B chr20:33587594 3'AG 33587594 Downstream 3bp 26483 chr3 69987175 69987175 1 + C T READ 69987176 + 69987156 69987196 41 AGCCCCATGGCTATGCTTACGCTTAACTCCAACTGTGAAAA AGCCCCATGGCTATGCTTATGCTTAACTCCAACTGTGAAAA < 41bp 0.500227386474895 0.710350677519184 NA NA prediction 0.420246582088576 Functional Gain - MITF ENSG00000187098 CDS Human protein_coding chr3:69987176 chr3:69987175 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_29027 0 0 0 0 1 MITF chr3:69987200 5'GT 69987200 Upstream 26bp 26484 chrX 150817141 150817141 1 + C T rs141831302 150817142 + 150817122 150817162 41 AAGCCGTGTACGTTGAACCCGCTGCTGCTGCTGCTGCTGCT AAGCCGTGTACGTTGAACCTGCTGCTGCTGCTGCTGCTGCT < 41bp 0.525877919884458 0.736000923566259 NA NA prediction 0.420246007363602 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150817142 chrX:150817141 synonymous SNV . 0 20 hm7G_associated_SNPs_29028 0 0 1 0 2 PASD1 chrX:150817087 3'AG 150817087 Downstream 55bp 26485 chrX 150817141 150817141 1 + C T rs141831302 150817142 + 150817122 150817162 41 AAGCCGTGTACGTTGAACCCGCTGCTGCTGCTGCTGCTGCT AAGCCGTGTACGTTGAACCTGCTGCTGCTGCTGCTGCTGCT < 41bp 0.525877919884458 0.736000923566259 NA NA prediction 0.420246007363602 Functional Gain - PASD1 ENSG00000166049 CDS Human protein_coding chrX:150817142 chrX:150817141 synonymous SNV . 0 20 hm7G_associated_SNPs_29028 0 0 1 0 2 PASD1 chrX:150817174 5'GT 150817174 Upstream 34bp 26486 chr6 43222851 43222851 1 + G A COAD 43222852 + 43222832 43222872 41 GTCAATGCCCACAAGAACCGGGTGAGTGGCAAAGCCCGGGA GTCAATGCCCACAAGAACCAGGTGAGTGGCAAAGCCCGGGA < 41bp 0.544848367316808 0.754968325806475 NA NA prediction 0.420239916979333 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222852 chr6:43222851 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_29029 0 0 0 0 2 TTBK1 chr6:43222787 3'AG 43222787 Downstream 65bp 26487 chr6 43222851 43222851 1 + G A COAD 43222852 + 43222832 43222872 41 GTCAATGCCCACAAGAACCGGGTGAGTGGCAAAGCCCGGGA GTCAATGCCCACAAGAACCAGGTGAGTGGCAAAGCCCGGGA < 41bp 0.544848367316808 0.754968325806475 NA NA prediction 0.420239916979333 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222852 chr6:43222851 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_29029 0 0 0 0 2 TTBK1 chr6:43222852 5'GT 43222852 Upstream 2bp 26488 chr16 71663299 71663299 1 + C T BLCA 71663300 + 71663280 71663320 41 TCGGAGAGATATCTGCCCTCGACCCCCAGGCCTGGACGAGA TCGGAGAGATATCTGCCCTTGACCCCCAGGCCTGGACGAGA < 41bp 0.521503785295486 0.731621546065919 NA NA prediction 0.420235521540865 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71663300 chr16:71663299 stopgain 0.001 1 20 hm7G_associated_SNPs_29031 0 0 0 0 2 MARVELD3 chr16:71663270 3'AG 71663270 Downstream 30bp 26489 chr16 71663299 71663299 1 + C T BLCA 71663300 + 71663280 71663320 41 TCGGAGAGATATCTGCCCTCGACCCCCAGGCCTGGACGAGA TCGGAGAGATATCTGCCCTTGACCCCCAGGCCTGGACGAGA < 41bp 0.521503785295486 0.731621546065919 NA NA prediction 0.420235521540865 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71663300 chr16:71663299 stopgain 0.001 1 20 hm7G_associated_SNPs_29031 0 0 0 0 2 MARVELD3 chr16:71663397 5'GT 71663397 Upstream 99bp 26490 chr17 6562192 6562192 1 + G T rs548215578 6562193 + 6562173 6562213 41 TCGCCTAGTGTTCCCTCCAGGCATGGAGGAACTGCAGGCCC TCGCCTAGTGTTCCCTCCATGCATGGAGGAACTGCAGGCCC < 41bp 0.678018928686189 0.888135362297901 NA NA prediction 0.420232867223425 Functional Gain - ALOX15P1 ENSG00000264468;ENSG00000141485 intergenic Human other chr17:6562193 chr17:6562192 . . 0 20 hm7G_associated_SNPs_29033 0 0 0 0 1 ALOX15P1 chr17:6562233 5'GT 6562233 Upstream 42bp 26491 chr19 6829894 6829894 1 + C T COAD 6829895 + 6829875 6829915 41 CCTGCACAGCTTCCAGGTTCGGGATGACTCTTCAGGAGACC CCTGCACAGCTTCCAGGTTTGGGATGACTCTTCAGGAGACC < 41bp 0.513216028065794 0.72333230062381 NA NA prediction 0.420232545116033 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6829895 chr19:6829894 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_29034 0 0 0 0 2 VAV1 chr19:6829797 3'AG 6829797 Downstream 98bp 26492 chr19 6829894 6829894 1 + C T COAD 6829895 + 6829875 6829915 41 CCTGCACAGCTTCCAGGTTCGGGATGACTCTTCAGGAGACC CCTGCACAGCTTCCAGGTTTGGGATGACTCTTCAGGAGACC < 41bp 0.513216028065794 0.72333230062381 NA NA prediction 0.420232545116033 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6829895 chr19:6829894 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_29034 0 0 0 0 2 VAV1 chr19:6829929 5'GT 6829929 Upstream 36bp 26493 chr1 67155933 67155933 1 + C T ACC 67155934 + 67155914 67155954 41 TCCAATAGCACCCTTAGCGCGGGCTGAAAGCACTTCTTCAA TCCAATAGCACCCTTAGCGTGGGCTGAAAGCACTTCTTCAA < 41bp 0.502441854968082 0.712538520354702 NA NA prediction 0.420193330773238 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67155934 chr1:67155933 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29040 0 0 0 0 2 SGIP1 chr1:67155873 3'AG 67155873 Downstream 61bp 26494 chr1 67155933 67155933 1 + C T ACC 67155934 + 67155914 67155954 41 TCCAATAGCACCCTTAGCGCGGGCTGAAAGCACTTCTTCAA TCCAATAGCACCCTTAGCGTGGGCTGAAAGCACTTCTTCAA < 41bp 0.502441854968082 0.712538520354702 NA NA prediction 0.420193330773238 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67155934 chr1:67155933 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29040 0 0 0 0 2 SGIP1 chr1:67155999 5'GT 67155999 Upstream 67bp 26495 chr1 205033576 205033576 1 + C T UCEC 205033577 + 205033557 205033597 41 GTGCTCTGGAGCAAAGGCACGGAGATTTTGGTCAACAGCAG GTGCTCTGGAGCAAAGGCATGGAGATTTTGGTCAACAGCAG < 41bp 0.508451336166873 0.718545115948699 NA NA prediction 0.420187559563651 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033577 chr1:205033576 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_29042 0 0 0 0 1 CNTN2 chr1:205033600 5'GT 205033600 Upstream 25bp 26496 chr15 69328180 69328180 1 + C T rs143898169 69328181 + 69328161 69328201 41 CTGGCATTGGCTGGGTACACGGTTCGGCCTCCCCGACAGGT CTGGCATTGGCTGGGTACATGGTTCGGCCTCCCCGACAGGT < 41bp 0.510028632363476 0.720119611781205 NA NA prediction 0.420181958835457 Functional Gain - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69328181 chr15:69328180 synonymous SNV . 0 20 hm7G_associated_SNPs_29043 0 0 0 0 2 NOX5 chr15:69328098 3'AG 69328098 Downstream 83bp 26497 chr15 69328180 69328180 1 + C T rs143898169 69328181 + 69328161 69328201 41 CTGGCATTGGCTGGGTACACGGTTCGGCCTCCCCGACAGGT CTGGCATTGGCTGGGTACATGGTTCGGCCTCCCCGACAGGT < 41bp 0.510028632363476 0.720119611781205 NA NA prediction 0.420181958835457 Functional Gain - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69328181 chr15:69328180 synonymous SNV . 0 20 hm7G_associated_SNPs_29043 0 0 0 0 2 NOX5 chr15:69328276 5'GT 69328276 Upstream 97bp 26498 chrX 10096607 10096607 1 + C T HNSC 10096608 + 10096588 10096628 41 TTCCTGCAGGATGCGGTGACGGTGCTCCTGGCCAGAACCAC TTCCTGCAGGATGCGGTGATGGTGCTCCTGGCCAGAACCAC < 41bp 0.5355681253088 0.745653503240141 NA NA prediction 0.420170755862681 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10096608 chrX:10096607 nonsynonymous SNV 0.400 1 20 hm7G_associated_SNPs_29044 0 0 0 0 1 WWC3 chrX:10096597 3'AG 10096597 Downstream 11bp 26499 chr11 67223848 67223848 1 + G A UCEC 67223849 + 67223829 67223869 41 GAGCTGGGTGACTGCATGCGGACCCTGGGCTACATGCCCAC GAGCTGGGTGACTGCATGCAGACCCTGGGCTACATGCCCAC < 41bp 0.516264009193407 0.726349370612519 NA NA prediction 0.420170722838224 Functional Gain - CABP4 ENSG00000175544 CDS Human protein_coding chr11:67223849 chr11:67223848 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29045 0 0 0 0 2 CABP4 chr11:67223770 3'AG 67223770 Downstream 79bp 26500 chr11 67223848 67223848 1 + G A UCEC 67223849 + 67223829 67223869 41 GAGCTGGGTGACTGCATGCGGACCCTGGGCTACATGCCCAC GAGCTGGGTGACTGCATGCAGACCCTGGGCTACATGCCCAC < 41bp 0.516264009193407 0.726349370612519 NA NA prediction 0.420170722838224 Functional Gain - CABP4 ENSG00000175544 CDS Human protein_coding chr11:67223849 chr11:67223848 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29045 0 0 0 0 2 CABP4 chr11:67223913 5'GT 67223913 Upstream 66bp 26501 chr10 96073057 96073057 1 + C T UCS 96073058 + 96073038 96073078 41 TTGCAGACTCACAGAGTCACGGTGCATGGGGTCCCAGGGCC TTGCAGACTCACAGAGTCATGGTGCATGGGGTCCCAGGGCC < 41bp 0.498238718120518 0.710082265150013 NA NA prediction 0.420164530300025 Functional Gain - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:96073058 chr10:96073057 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_29046 0 0 0 0 2 PLCE1 chr10:96073011 3'AG 96073011 Downstream 47bp 26502 chr10 96073057 96073057 1 + C T UCS 96073058 + 96073038 96073078 41 TTGCAGACTCACAGAGTCACGGTGCATGGGGTCCCAGGGCC TTGCAGACTCACAGAGTCATGGTGCATGGGGTCCCAGGGCC < 41bp 0.498238718120518 0.710082265150013 NA NA prediction 0.420164530300025 Functional Gain - PLCE1 ENSG00000138193 CDS Human protein_coding chr10:96073058 chr10:96073057 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_29046 0 0 0 0 2 PLCE1 chr10:96073139 5'GT 96073139 Upstream 83bp 26503 chr3 14964574 14964574 1 + C T STAD 14964575 + 14964555 14964595 41 CGTGTGCCGGAACTGTTCGCGGAACAAGTACCCGCTGAAGT CGTGTGCCGGAACTGTTCGTGGAACAAGTACCCGCTGAAGT < 41bp 0.534237324947457 0.744319006143906 NA NA prediction 0.420163362392899 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14964575 chr3:14964574 nonsynonymous SNV 0.567 4 20 hm7G_associated_SNPs_29047 0 0 0 0 1 FGD5 chr3:14964553 3'AG 14964553 Downstream 22bp 26504 chr17 40945664 40945664 1 + C T KIRC 40945665 + 40945645 40945685 41 TGGATTTCTCAGACGGATTCGGGAGATTATCCAGCGAGTGG TGGATTTCTCAGACGGATTTGGGAGATTATCCAGCGAGTGG < 41bp 0.491839541956911 0.710081500972965 NA NA prediction 0.42016300194593 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40945665 chr17:40945664 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_29048 0 0 1 0 2 WNK4 chr17:40945610 3'AG 40945610 Downstream 55bp 26505 chr17 40945664 40945664 1 + C T KIRC 40945665 + 40945645 40945685 41 TGGATTTCTCAGACGGATTCGGGAGATTATCCAGCGAGTGG TGGATTTCTCAGACGGATTTGGGAGATTATCCAGCGAGTGG < 41bp 0.491839541956911 0.710081500972965 NA NA prediction 0.42016300194593 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40945665 chr17:40945664 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_29048 0 0 1 0 2 WNK4 chr17:40945747 5'GT 40945747 Upstream 84bp 26506 chr11 68207296 68207296 1 + G A rs150332207 68207297 + 68207277 68207317 41 GTGAGCCTGATGGGGGGCCGGGGCGGGGTGCCCCTCTACGA GTGAGCCTGATGGGGGGCCAGGGCGGGGTGCCCCTCTACGA < 41bp 0.538814967824492 0.748893507221497 NA NA prediction 0.420157078794011 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68207297 chr11:68207296 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_29049 0 0 1 0 2 LRP5 chr11:68207245 3'AG 68207245 Downstream 52bp 26507 chr11 68207296 68207296 1 + G A rs150332207 68207297 + 68207277 68207317 41 GTGAGCCTGATGGGGGGCCGGGGCGGGGTGCCCCTCTACGA GTGAGCCTGATGGGGGGCCAGGGCGGGGTGCCCCTCTACGA < 41bp 0.538814967824492 0.748893507221497 NA NA prediction 0.420157078794011 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68207297 chr11:68207296 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_29049 0 0 1 0 2 LRP5 chr11:68207384 5'GT 68207384 Upstream 89bp 26508 chr1 158325337 158325337 1 + G T TGCT 158325338 + 158325318 158325358 41 CGGGGCTCATGGAAGCAGGGGAGTCAGAACTGAAACGGAAA CGGGGCTCATGGAAGCAGGTGAGTCAGAACTGAAACGGAAA < 41bp 0.408153981702911 0.710076687559612 NA NA prediction 0.420153375119224 Functional Gain - CD1E ENSG00000158488 CDS Human protein_coding chr1:158325338 chr1:158325337 synonymous SNV . 0 20 hm7G_associated_SNPs_29050 0 0 0 0 1 CD1E chr1:158325359 5'GT 158325359 Upstream 23bp 26509 chr17 29848935 29848935 1 + C T LGG 29848936 + 29848916 29848956 41 TTTCCCTCATGAATCAGTGCGGGGCAGACGCCTAGGAAAAT TTTCCCTCATGAATCAGTGTGGGGCAGACGCCTAGGAAAAT < 41bp 0.519269528854435 0.729345706952048 NA NA prediction 0.420152356195226 Functional Gain - RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29848936 chr17:29848935 nonsynonymous SNV 0.782 2 20 hm7G_associated_SNPs_29051 0 0 1 0 1 RAB11FIP4 chr17:29848933 3'AG 29848933 Downstream 3bp 26510 chr19 1369297 1369297 1 + G A UCEC 1369298 + 1369278 1369318 41 GGACTTCAACCAGGACATCGGCTGGTGTGTCTCCCTCATCA GGACTTCAACCAGGACATCAGCTGGTGTGTCTCCCTCATCA < 41bp 0.494364339416416 0.710075062800007 NA NA prediction 0.420150125600014 Functional Gain - MUM1 ENSG00000160953 CDS Human protein_coding chr19:1369298 chr19:1369297 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_29053 0 0 1 0 2 MUM1 chr19:1369264 3'AG 1369264 Downstream 34bp 26511 chr19 1369297 1369297 1 + G A UCEC 1369298 + 1369278 1369318 41 GGACTTCAACCAGGACATCGGCTGGTGTGTCTCCCTCATCA GGACTTCAACCAGGACATCAGCTGGTGTGTCTCCCTCATCA < 41bp 0.494364339416416 0.710075062800007 NA NA prediction 0.420150125600014 Functional Gain - MUM1 ENSG00000160953 CDS Human protein_coding chr19:1369298 chr19:1369297 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_29053 0 0 1 0 2 MUM1 chr19:1369339 5'GT 1369339 Upstream 43bp 26512 chr20 37168446 37168446 1 + C T UCEC 37168447 + 37168427 37168467 41 GATGGTTGACTCAGGAGACCGGAAGCGAGCCATCAGTTCTG GATGGTTGACTCAGGAGACTGGAAGCGAGCCATCAGTTCTG < 41bp 0.504061835734755 0.714133266416712 NA NA prediction 0.420142861363913 Functional Gain - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37168447 chr20:37168446 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29054 0 0 1 0 1 RALGAPB chr20:37168419 3'AG 37168419 Downstream 28bp 26513 chr11 117975449 117975449 1 + G A rs145094243 117975450 + 117975430 117975470 41 CACTGCAGGTGCTGGACTCGGCCACAGGGAACTGGTTCTCT CACTGCAGGTGCTGGACTCAGCCACAGGGAACTGGTTCTCT < 41bp 0.52685354977998 0.736922758438152 NA NA prediction 0.420138417316343 Functional Gain - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117975450 chr11:117975449 synonymous SNV . 0 20 hm7G_associated_SNPs_29055 0 0 0 0 2 TMPRSS4 chr11:117975406 3'AG 117975406 Downstream 44bp 26514 chr11 117975449 117975449 1 + G A rs145094243 117975450 + 117975430 117975470 41 CACTGCAGGTGCTGGACTCGGCCACAGGGAACTGGTTCTCT CACTGCAGGTGCTGGACTCAGCCACAGGGAACTGGTTCTCT < 41bp 0.52685354977998 0.736922758438152 NA NA prediction 0.420138417316343 Functional Gain - TMPRSS4 ENSG00000137648 CDS Human protein_coding chr11:117975450 chr11:117975449 synonymous SNV . 0 20 hm7G_associated_SNPs_29055 0 0 0 0 2 TMPRSS4 chr11:117975535 5'GT 117975535 Upstream 87bp 26515 chr14 23314499 23314499 1 + C T UCEC 23314500 + 23314480 23314520 41 AGCTCAGGGCAGTGGATAGCGAGTACCCCAAGAACATCAAA AGCTCAGGGCAGTGGATAGTGAGTACCCCAAGAACATCAAA < 41bp 0.516587969561989 0.726649159754156 NA NA prediction 0.420122380384333 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23314500 chr14:23314499 synonymous SNV . 0 20 hm7G_associated_SNPs_29057 0 0 0 0 2 MMP14 chr14:23314460 3'AG 23314460 Downstream 40bp 26516 chr14 23314499 23314499 1 + C T UCEC 23314500 + 23314480 23314520 41 AGCTCAGGGCAGTGGATAGCGAGTACCCCAAGAACATCAAA AGCTCAGGGCAGTGGATAGTGAGTACCCCAAGAACATCAAA < 41bp 0.516587969561989 0.726649159754156 NA NA prediction 0.420122380384333 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23314500 chr14:23314499 synonymous SNV . 0 20 hm7G_associated_SNPs_29057 0 0 0 0 2 MMP14 chr14:23314575 5'GT 23314575 Upstream 77bp 26517 chr11 34492985 34492985 1 + G A rs2234940 34492986 + 34492966 34493006 41 AAGGCAAATCTGTGAGGCCGGGGCCCTGCACCTGTGCAGCG AAGGCAAATCTGTGAGGCCAGGGCCCTGCACCTGTGCAGCG < 41bp 0.499855935732594 0.710059666552766 NA NA prediction 0.420119333105531 Functional Gain - CAT ENSG00000121691 UTR3 Human protein_coding chr11:34492986 chr11:34492985 . . 0 20 hm7G_associated_SNPs_29058 0 0 1 1 1 CAT chr11:34492915 3'AG 34492915 Downstream 71bp 26518 chr10 35896563 35896563 1 + G A UCEC 35896564 + 35896544 35896584 41 CTGGTGATTGTCTTGGCGGGGCGACCCGTCTACCAGGACGA CTGGTGATTGTCTTGGCGGAGCGACCCGTCTACCAGGACGA < 41bp 0.529888065359313 0.739947574189351 NA NA prediction 0.420119017660076 Functional Gain - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35896564 chr10:35896563 nonsynonymous SNV 0.004 5 20 hm7G_associated_SNPs_29059 0 0 0 0 1 GJD4 chr10:35896506 3'AG 35896506 Downstream 58bp 26519 chr11 12315195 12315195 1 + G T COAD 12315196 + 12315176 12315216 41 GAGGCGAGCCGTAGCCCAAGGAGCACCCAGGGAAATTCCCC GAGGCGAGCCGTAGCCCAATGAGCACCCAGGGAAATTCCCC < 41bp 0.359432367624507 0.710058662935228 NA NA prediction 0.420117325870457 Functional Gain - MICALCL ENSG00000133808 CDS Human protein_coding chr11:12315196 chr11:12315195 stopgain 0.073 0 20 hm7G_associated_SNPs_29060 0 0 0 0 1 MICALCL chr11:12315108 3'AG 12315108 Downstream 88bp 26520 chr12 69044198 69044198 1 + G T UCEC 69044199 + 69044179 69044219 41 GACTGTACAATTTGTTCAAGGAATTTTTGTAGAAAAATACG GACTGTACAATTTGTTCAATGAATTTTTGTAGAAAAATACG < 41bp 0.394031961570455 0.710057907516062 NA NA prediction 0.420115815032124 Functional Gain - RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044199 chr12:69044198 stopgain 1.000 1 20 hm7G_associated_SNPs_29061 0 0 1 0 2 RAP1B chr12:69044180 3'AG 69044180 Downstream 19bp 26521 chr12 69044198 69044198 1 + G T UCEC 69044199 + 69044179 69044219 41 GACTGTACAATTTGTTCAAGGAATTTTTGTAGAAAAATACG GACTGTACAATTTGTTCAATGAATTTTTGTAGAAAAATACG < 41bp 0.394031961570455 0.710057907516062 NA NA prediction 0.420115815032124 Functional Gain - RAP1B ENSG00000127314 CDS Human protein_coding chr12:69044199 chr12:69044198 stopgain 1.000 1 20 hm7G_associated_SNPs_29061 0 0 1 0 2 RAP1B chr12:69044248 5'GT 69044248 Upstream 51bp 26522 chr3 35723305 35723305 1 + C T LUAD 35723306 + 35723286 35723326 41 GGAGGGACTGAGCAGGAGACGGCCACTCCAGAGAACGGCAT GGAGGGACTGAGCAGGAGATGGCCACTCCAGAGAACGGCAT < 41bp 0.501680144222646 0.711731395599367 NA NA prediction 0.420102502753441 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35723306 chr3:35723305 nonsynonymous SNV 0.067 0 20 hm7G_associated_SNPs_29062 0 0 0 0 2 ARPP21 chr3:35723206 3'AG 35723206 Downstream 100bp 26523 chr3 35723305 35723305 1 + C T LUAD 35723306 + 35723286 35723326 41 GGAGGGACTGAGCAGGAGACGGCCACTCCAGAGAACGGCAT GGAGGGACTGAGCAGGAGATGGCCACTCCAGAGAACGGCAT < 41bp 0.501680144222646 0.711731395599367 NA NA prediction 0.420102502753441 Functional Gain - ARPP21 ENSG00000172995 CDS Human protein_coding chr3:35723306 chr3:35723305 nonsynonymous SNV 0.067 0 20 hm7G_associated_SNPs_29062 0 0 0 0 2 ARPP21 chr3:35723372 5'GT 35723372 Upstream 68bp 26524 chr1 202287116 202287116 1 + G A SKCM 202287117 + 202287097 202287137 41 GAGTACCTCTTTGAAAGCTGGGGCATCCGCCTGGCCGTGTG GAGTACCTCTTTGAAAGCTAGGGCATCCGCCTGGCCGTGTG < 41bp 0.520397763011878 0.730446832462311 NA NA prediction 0.420098138900866 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202287117 chr1:202287116 stopgain 1.000 1 20 hm7G_associated_SNPs_29064 0 0 0 0 1 LGR6 chr1:202287080 3'AG 202287080 Downstream 37bp 26525 chr15 99874262 99874262 1 + C T COAD 99874263 + 99874243 99874283 41 TCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCA TCGTCTATGGTATGTGCCGTGCCATCTCTGCCAGCTGCCCA < 41bp 0.526374897875161 0.736422976523783 NA NA prediction 0.420096157297243 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99874263 chr15:99874262 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29065 0 0 0 2 2 LRRC28 chr15:99874223 3'AG 99874223 Downstream 40bp 26526 chr15 99874262 99874262 1 + C T COAD 99874263 + 99874243 99874283 41 TCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCA TCGTCTATGGTATGTGCCGTGCCATCTCTGCCAGCTGCCCA < 41bp 0.526374897875161 0.736422976523783 NA NA prediction 0.420096157297243 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99874263 chr15:99874262 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29065 0 0 0 2 2 LRRC28 chr15:99874334 5'GT 99874334 Upstream 73bp 26527 chr3 183479920 183479920 1 + C T CESC 183479921 + 183479901 183479941 41 AACCTGGTGAAGCCCCTCACGTGCCCGCAACAGGAGCTGCC AACCTGGTGAAGCCCCTCATGTGCCCGCAACAGGAGCTGCC < 41bp 0.518491843418404 0.728535012057816 NA NA prediction 0.420086337278824 Functional Gain - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183479921 chr3:183479920 synonymous SNV . 0 20 hm7G_associated_SNPs_29068 0 0 1 0 1 YEATS2 chr3:183479885 3'AG 183479885 Downstream 36bp 26528 chr12 272707 272707 1 + C T COAD 272708 + 272688 272728 41 TGTGCTGCAGCCGGCTCTTCGAGGTGACGGATGTGAACAAG TGTGCTGCAGCCGGCTCTTTGAGGTGACGGATGTGAACAAG < 41bp 0.508327204830172 0.718367045799533 NA NA prediction 0.420079681938723 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:272708 chr12:272707 synonymous SNV . 0 20 hm7G_associated_SNPs_29071 0 0 0 0 2 IQSEC3 chr12:272660 3'AG 272660 Downstream 48bp 26529 chr12 272707 272707 1 + C T COAD 272708 + 272688 272728 41 TGTGCTGCAGCCGGCTCTTCGAGGTGACGGATGTGAACAAG TGTGCTGCAGCCGGCTCTTTGAGGTGACGGATGTGAACAAG < 41bp 0.508327204830172 0.718367045799533 NA NA prediction 0.420079681938723 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:272708 chr12:272707 synonymous SNV . 0 20 hm7G_associated_SNPs_29071 0 0 0 0 2 IQSEC3 chr12:272785 5'GT 272785 Upstream 79bp 26530 chr16 85105471 85105471 1 + C T SKCM 85105472 + 85105452 85105492 41 AGGCCGGGAGTGGTTTGCTCGATACGTGAGTGCCCAGGTAA AGGCCGGGAGTGGTTTGCTTGATACGTGAGTGCCCAGGTAA < 41bp 0.540258198737145 0.75029385912863 NA NA prediction 0.420071320782969 Functional Gain - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85105472 chr16:85105471 stopgain 0.958 1 20 hm7G_associated_SNPs_29072 0 0 1 0 2 KIAA0513 chr16:85105389 3'AG 85105389 Downstream 83bp 26531 chr16 85105471 85105471 1 + C T SKCM 85105472 + 85105452 85105492 41 AGGCCGGGAGTGGTTTGCTCGATACGTGAGTGCCCAGGTAA AGGCCGGGAGTGGTTTGCTTGATACGTGAGTGCCCAGGTAA < 41bp 0.540258198737145 0.75029385912863 NA NA prediction 0.420071320782969 Functional Gain - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85105472 chr16:85105471 stopgain 0.958 1 20 hm7G_associated_SNPs_29072 0 0 1 0 2 KIAA0513 chr16:85105488 5'GT 85105488 Upstream 18bp 26532 chr12 51080364 51080364 1 + C T rs74751916 51080365 + 51080345 51080385 41 GTTTGATTTAGGTTGGCCCCGGCTCAAATGGGTTGTAACAG GTTTGATTTAGGTTGGCCCTGGCTCAAATGGGTTGTAACAG < 41bp 0.507924132169637 0.717958685464733 NA NA prediction 0.420069106590192 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51080365 chr12:51080364 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_29073 0 0 1 0 1 DIP2B chr12:51080356 3'AG 51080356 Downstream 9bp 26533 chr6 41897948 41897948 1 + G A STAD 41897949 + 41897929 41897969 41 CAGTCATGTCAGAGGTGTCGGGCTTCCCTATGCCCCAGCTG CAGTCATGTCAGAGGTGTCAGGCTTCCCTATGCCCCAGCTG < 41bp 0.489511933682431 0.710028223157564 NA NA prediction 0.420056446315128 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41897949 chr6:41897948 synonymous SNV . 0 20 hm7G_associated_SNPs_29079 0 0 1 0 2 BYSL chr6:41897870 3'AG 41897870 Downstream 79bp 26534 chr6 41897948 41897948 1 + G A STAD 41897949 + 41897929 41897969 41 CAGTCATGTCAGAGGTGTCGGGCTTCCCTATGCCCCAGCTG CAGTCATGTCAGAGGTGTCAGGCTTCCCTATGCCCCAGCTG < 41bp 0.489511933682431 0.710028223157564 NA NA prediction 0.420056446315128 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41897949 chr6:41897948 synonymous SNV . 0 20 hm7G_associated_SNPs_29079 0 0 1 0 2 BYSL chr6:41898008 5'GT 41898008 Upstream 61bp 26535 chr20 39985680 39985680 1 + C T HNSC 39985681 + 39985661 39985701 41 CCCCTTTGTCTGGCCTCAGCGGCGCCTGAACCTGCAAGAAG CCCCTTTGTCTGGCCTCAGTGGCGCCTGAACCTGCAAGAAG < 41bp 0.516054664012844 0.726082037524968 NA NA prediction 0.420054747024249 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39985681 chr20:39985680 nonsynonymous SNV 0.174 0 20 hm7G_associated_SNPs_29080 0 0 1 0 1 LPIN3 chr20:39985680 3'AG 39985680 Downstream 1bp 26536 chr16 88110198 88110198 1 + G A COAD 88110199 + 88110179 88110219 41 CTTTCTCCCTTTTGCAGACGGCCGAAGCCCTGCAGCCCACG CTTTCTCCCTTTTGCAGACAGCCGAAGCCCTGCAGCCCACG < 41bp 0.514492169981193 0.724518307287977 NA NA prediction 0.420052274613567 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88110199 chr16:88110198 synonymous SNV . 0 20 hm7G_associated_SNPs_29081 0 0 1 0 1 BANP chr16:88110196 3'AG 88110196 Downstream 3bp 26537 chr14 69808421 69808421 1 + G T COAD 69808422 + 69808402 69808442 41 GCTACGCGGATAGAGCAGAGGAAGAAGATGAACTGCAAGTC GCTACGCGGATAGAGCAGATGAAGAAGATGAACTGCAAGTC < 41bp 0.697744600359319 0.907769407350438 NA NA prediction 0.420049613982239 Functional Gain - GALNT16 ENSG00000100626 CDS Human protein_coding chr14:69808422 chr14:69808421 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29082 0 0 0 0 1 GALNT16 chr14:69808481 5'GT 69808481 Upstream 61bp 26538 chrX 129159276 129159276 1 + C T COAD 129159277 + 129159257 129159297 41 GAAGAGGAAGAAACGAAGACGGCAGAAGAGCCGAAAATATC GAAGAGGAAGAAACGAAGATGGCAGAAGAGCCGAAAATATC < 41bp 0.49769996380084 0.710019816678786 NA NA prediction 0.420039633357573 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129159277 chrX:129159276 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_29083 0 0 1 0 1 BCORL1 chrX:129159354 5'GT 129159354 Upstream 79bp 26539 chr15 101432806 101432806 1 + G T SKCM 101432807 + 101432787 101432827 41 ACCCTCAGATACTTTGCAGGGTGGGCAGACAAAATCCAGGG ACCCTCAGATACTTTGCAGTGTGGGCAGACAAAATCCAGGG < 41bp 0.373256680156473 0.710018210234304 NA NA prediction 0.420036420468608 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432807 chr15:101432806 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_29084 0 0 0 0 2 ALDH1A3 chr15:101432715 3'AG 101432715 Downstream 92bp 26540 chr15 101432806 101432806 1 + G T SKCM 101432807 + 101432787 101432827 41 ACCCTCAGATACTTTGCAGGGTGGGCAGACAAAATCCAGGG ACCCTCAGATACTTTGCAGTGTGGGCAGACAAAATCCAGGG < 41bp 0.373256680156473 0.710018210234304 NA NA prediction 0.420036420468608 Functional Gain - ALDH1A3 ENSG00000184254 CDS Human protein_coding chr15:101432807 chr15:101432806 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_29084 0 0 0 0 2 ALDH1A3 chr15:101432844 5'GT 101432844 Upstream 39bp 26541 chr1 21887207 21887207 1 + G T SARC 21887208 + 21887188 21887228 41 AGAAGCTCAACACCAACGTGGCTAAGAATGTCATCATGTTC AGAAGCTCAACACCAACGTTGCTAAGAATGTCATCATGTTC < 41bp 0.352900445391338 0.710017819065991 NA NA prediction 0.420035638131981 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21887208 chr1:21887207 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_29085 0 0 0 0 2 ALPL chr1:21887119 3'AG 21887119 Downstream 89bp 26542 chr1 21887207 21887207 1 + G T SARC 21887208 + 21887188 21887228 41 AGAAGCTCAACACCAACGTGGCTAAGAATGTCATCATGTTC AGAAGCTCAACACCAACGTTGCTAAGAATGTCATCATGTTC < 41bp 0.352900445391338 0.710017819065991 NA NA prediction 0.420035638131981 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21887208 chr1:21887207 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_29085 0 0 0 0 2 ALPL chr1:21887238 5'GT 21887238 Upstream 32bp 26543 chr16 88664701 88664701 1 + C T HNSC 88664702 + 88664682 88664722 41 CTAATGGTGCCCCGCCTCTCGGACCTCACCCGCTGATGCCC CTAATGGTGCCCCGCCTCTTGGACCTCACCCGCTGATGCCC < 41bp 0.506548324782825 0.716566036394788 NA NA prediction 0.420035423223926 Functional Gain - ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88664702 chr16:88664701 synonymous SNV . 0 20 hm7G_associated_SNPs_29086 0 0 1 0 1 ZC3H18 chr16:88664734 5'GT 88664734 Upstream 34bp 26544 chr7 75612939 75612939 1 + C T HNSC 75612940 + 75612920 75612960 41 CACCTGGAATTGGACATCTCGGACTCCAAAATCAGGTACCA CACCTGGAATTGGACATCTTGGACTCCAAAATCAGGTACCA < 41bp 0.504285311844341 0.714299961232643 NA NA prediction 0.420029298776605 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75612940 chr7:75612939 nonsynonymous SNV 0.709 3 20 hm7G_associated_SNPs_29087 0 0 1 0 1 POR chr7:75612954 5'GT 75612954 Upstream 16bp 26545 chr8 21938682 21938682 1 + G A SKCM 21938683 + 21938663 21938703 41 CGAACCAAGCTGCCACCGGGGGTGGATCGGATGCGGCTTGA CGAACCAAGCTGCCACCGGAGGTGGATCGGATGCGGCTTGA < 41bp 0.485089043989918 0.710013763696744 NA NA prediction 0.420027527393487 Functional Gain - DMTN ENSG00000158856 CDS Human protein_coding chr8:21938683 chr8:21938682 nonsynonymous SNV 0.899 2 20 hm7G_associated_SNPs_29088 0 0 1 0 2 DMTN chr8:21938624 3'AG 21938624 Downstream 59bp 26546 chr8 21938682 21938682 1 + G A SKCM 21938683 + 21938663 21938703 41 CGAACCAAGCTGCCACCGGGGGTGGATCGGATGCGGCTTGA CGAACCAAGCTGCCACCGGAGGTGGATCGGATGCGGCTTGA < 41bp 0.485089043989918 0.710013763696744 NA NA prediction 0.420027527393487 Functional Gain - DMTN ENSG00000158856 CDS Human protein_coding chr8:21938683 chr8:21938682 nonsynonymous SNV 0.899 2 20 hm7G_associated_SNPs_29088 0 0 1 0 2 DMTN chr8:21938704 5'GT 21938704 Upstream 23bp 26547 chr2 9582074 9582074 1 + C T COAD 9582075 + 9582055 9582095 41 AGGAATGGTGTCATTATAGCGGGATACTGTGTAGAAGGGAC AGGAATGGTGTCATTATAGTGGGATACTGTGTAGAAGGGAC < 41bp 0.500688391640408 0.71070182871332 NA NA prediction 0.420026874145825 Functional Gain - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9582075 chr2:9582074 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_29089 0 0 1 0 1 CPSF3 chr2:9582105 5'GT 9582105 Upstream 32bp 26548 chr20 19977394 19977394 1 + C T UCEC 19977395 + 19977375 19977415 41 CCAAGAAGAACAAGCAGCGCGACTGCTCAGCTCAGAAACCA CCAAGAAGAACAAGCAGCGTGACTGCTCAGCTCAGAAACCA < 41bp 0.502318870283744 0.712330897432941 NA NA prediction 0.420024054298394 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19977395 chr20:19977394 stopgain 0.032 0 20 hm7G_associated_SNPs_29090 0 0 0 0 2 RIN2 chr20:19977323 3'AG 19977323 Downstream 72bp 26549 chr20 19977394 19977394 1 + C T UCEC 19977395 + 19977375 19977415 41 CCAAGAAGAACAAGCAGCGCGACTGCTCAGCTCAGAAACCA CCAAGAAGAACAAGCAGCGTGACTGCTCAGCTCAGAAACCA < 41bp 0.502318870283744 0.712330897432941 NA NA prediction 0.420024054298394 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19977395 chr20:19977394 stopgain 0.032 0 20 hm7G_associated_SNPs_29090 0 0 0 0 2 RIN2 chr20:19977486 5'GT 19977486 Upstream 93bp 26550 chr17 72278067 72278067 1 + G A rs374070900 72278068 + 72278048 72278088 41 TCATGCCCAACCCTGAGCTGGCCGAGCAGTTCGTGGAGCGG TCATGCCCAACCCTGAGCTAGCCGAGCAGTTCGTGGAGCGG < 41bp 0.575750046123473 0.785760083769863 NA NA prediction 0.42002007529278 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72278068 chr17:72278067 synonymous SNV . 0 20 hm7G_associated_SNPs_29091 0 0 0 0 1 DNAI2 chr17:72278139 5'GT 72278139 Upstream 73bp 26551 chr17 47589341 47589341 1 + C T GBM 47589342 + 47589322 47589362 41 AGGGAGAAAAACTCCACAGCGACAGTGGCATCTCCGTGGAC AGGGAGAAAAACTCCACAGTGACAGTGGCATCTCCGTGGAC < 41bp 0.499364360174563 0.710008880287264 NA NA prediction 0.420017760574529 Functional Gain - NGFR ENSG00000064300 CDS Human protein_coding chr17:47589342 chr17:47589341 synonymous SNV . 0 20 hm7G_associated_SNPs_29092 0 0 0 0 1 NGFR chr17:47589254 3'AG 47589254 Downstream 88bp 26552 chr2 73441397 73441397 1 + G A SKCM 73441398 + 73441378 73441418 41 GCGGAGGCGCGCCCAAGATGGCGGCCTCCATGTGCGACGTG GCGGAGGCGCGCCCAAGATAGCGGCCTCCATGTGCGACGTG < 41bp 0.542317784127293 0.752324952660733 NA NA prediction 0.420014337066879 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73441398 chr2:73441397 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29093 0 0 1 0 1 SMYD5 chr2:73441490 5'GT 73441490 Upstream 94bp 26553 chr17 57466752 57466752 1 + C T CESC 57466753 + 57466733 57466773 41 CTGTGGGCCTGCAGAAGAGCGAGTGTTGCTAACAGGACTGC CTGTGGGCCTGCAGAAGAGTGAGTGTTGCTAACAGGACTGC < 41bp 0.501398494686418 0.711401943264485 NA NA prediction 0.420006897156134 Functional Gain - YPEL2 ENSG00000175155 CDS Human protein_coding chr17:57466753 chr17:57466752 stopgain 0.999 1 20 hm7G_associated_SNPs_29095 0 0 0 0 1 YPEL2 chr17:57466829 5'GT 57466829 Upstream 78bp 26554 chr16 30035332 30035332 1 + G T COAD 30035333 + 30035313 30035353 41 CTAGCAGGTTCCAGCCCCGGGCTCTTCCATCACATCCTGGT CTAGCAGGTTCCAGCCCCGTGCTCTTCCATCACATCCTGGT < 41bp 0.367310870114255 0.710002561250452 NA NA prediction 0.420005122500904 Functional Gain - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035333 chr16:30035332 nonsynonymous SNV 0.041 1 20 hm7G_associated_SNPs_29096 0 0 0 0 2 C16orf92 chr16:30035320 3'AG 30035320 Downstream 13bp 26555 chr16 30035332 30035332 1 + G T COAD 30035333 + 30035313 30035353 41 CTAGCAGGTTCCAGCCCCGGGCTCTTCCATCACATCCTGGT CTAGCAGGTTCCAGCCCCGTGCTCTTCCATCACATCCTGGT < 41bp 0.367310870114255 0.710002561250452 NA NA prediction 0.420005122500904 Functional Gain - C16orf92 ENSG00000167194 CDS Human protein_coding chr16:30035333 chr16:30035332 nonsynonymous SNV 0.041 1 20 hm7G_associated_SNPs_29096 0 0 0 0 2 C16orf92 chr16:30035407 5'GT 30035407 Upstream 76bp 26556 chr19 11170790 11170790 1 + G A BRCA 11170791 + 11170771 11170811 41 GACCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTC GACCGGCTGAAGGGCGGCCAGCGGCGGCCGAGCCGAGGGTC < 41bp 0.494905804308396 0.710001273548835 NA NA prediction 0.420002547097671 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11170791 chr19:11170790 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_29097 0 0 1 0 2 SMARCA4 chr19:11170721 3'AG 11170721 Downstream 70bp 26557 chr19 11170790 11170790 1 + G A BRCA 11170791 + 11170771 11170811 41 GACCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTC GACCGGCTGAAGGGCGGCCAGCGGCGGCCGAGCCGAGGGTC < 41bp 0.494905804308396 0.710001273548835 NA NA prediction 0.420002547097671 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11170791 chr19:11170790 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_29097 0 0 1 0 2 SMARCA4 chr19:11170863 5'GT 11170863 Upstream 74bp 26558 chr12 112924296 112924296 1 + G T LUSC 112924297 + 112924277 112924317 41 AGGGGAATACGGAGAGAACGGTCTGGCAATACCACTTTCGG AGGGGAATACGGAGAGAACTGTCTGGCAATACCACTTTCGG < 41bp 0.373212360590969 0.710000440642215 NA NA prediction 0.42000088128443 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112924297 chr12:112924296 synonymous SNV . 0 20 hm7G_associated_SNPs_29098 0 0 1 0 1 PTPN11 chr12:112924279 3'AG 112924279 Downstream 18bp 26559 chr16 85701993 85701993 1 + C T UCEC 85701994 + 85701974 85702014 41 AGCGCAAGTGGCAAGGGATCGAGGCCGTTTTTGAAGCTTAC AGCGCAAGTGGCAAGGGATTGAGGCCGTTTTTGAAGCTTAC < 41bp 0.503862525274246 0.71386204538766 NA NA prediction 0.419999040226829 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85701994 chr16:85701993 synonymous SNV . 0 20 hm7G_associated_SNPs_29099 0 0 1 0 1 GSE1 chr16:85702030 5'GT 85702030 Upstream 38bp 26560 chr20 62324611 62324611 1 + G T COAD 62324612 + 62324592 62324632 41 GCATTCCCCGAAGGCAGCGGGCACAGCCGGTCCTGGACCCC GCATTCCCCGAAGGCAGCGTGCACAGCCGGTCCTGGACCCC < 41bp 0.358713673628981 0.709997508712487 NA NA prediction 0.419995017424973 Functional Gain - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62324612 chr20:62324611 synonymous SNV . 0 20 hm7G_associated_SNPs_29100 0 0 1 0 1 RTEL1 chr20:62324636 5'GT 62324636 Upstream 26bp 26561 chr15 91795713 91795713 1 + C T rs74978515 91795714 + 91795694 91795734 41 GGATGACTGGGGGCCTGTACGCATCTGCCATGGCCTGGAGC GGATGACTGGGGGCCTGTATGCATCTGCCATGGCCTGGAGC < 41bp 0.494662540432398 0.709991767235054 NA NA prediction 0.419983534470109 Functional Gain - SV2B ENSG00000185518 CDS Human protein_coding chr15:91795714 chr15:91795713 synonymous SNV . 0 20 hm7G_associated_SNPs_29101 0 0 0 0 1 SV2B chr15:91795750 5'GT 91795750 Upstream 38bp 26562 chr6 138197249 138197249 1 + G T LUSC 138197250 + 138197230 138197270 41 CAGATACCCCATTGTTCTCGGCTATGACAGCCATCATTTTG CAGATACCCCATTGTTCTCTGCTATGACAGCCATCATTTTG < 41bp 0.36067759397174 0.709990108644825 NA NA prediction 0.41998021728965 Functional Gain - TNFAIP3 ENSG00000118503 CDS Human protein_coding chr6:138197250 chr6:138197249 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_29102 0 0 1 0 1 TNFAIP3 chr6:138197303 5'GT 138197303 Upstream 55bp 26563 chr7 141727469 141727469 1 + C T UCEC 141727470 + 141727450 141727490 41 GATTTCACCTCAGTCGTTACGAATATGGAACCTTAGACAAC GATTTCACCTCAGTCGTTATGAATATGGAACCTTAGACAAC < 41bp 0.50222592647235 0.712214305401057 NA NA prediction 0.419976757857415 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141727470 chr7:141727469 synonymous SNV . 0 20 hm7G_associated_SNPs_29104 0 0 0 0 2 MGAM chr7:141727410 3'AG 141727410 Downstream 60bp 26564 chr7 141727469 141727469 1 + C T UCEC 141727470 + 141727450 141727490 41 GATTTCACCTCAGTCGTTACGAATATGGAACCTTAGACAAC GATTTCACCTCAGTCGTTATGAATATGGAACCTTAGACAAC < 41bp 0.50222592647235 0.712214305401057 NA NA prediction 0.419976757857415 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141727470 chr7:141727469 synonymous SNV . 0 20 hm7G_associated_SNPs_29104 0 0 0 0 2 MGAM chr7:141727535 5'GT 141727535 Upstream 67bp 26565 chr4 25676183 25676183 1 + G A GBM 25676184 + 25676164 25676204 41 CACGCTGGGCTCCAACATCGGCACCACCACCACCGCCATCC CACGCTGGGCTCCAACATCAGCACCACCACCACCGCCATCC < 41bp 0.540303343890556 0.750287342267696 NA NA prediction 0.41996799675428 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25676184 chr4:25676183 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_29105 0 0 0 0 2 SLC34A2 chr4:25676127 3'AG 25676127 Downstream 57bp 26566 chr4 25676183 25676183 1 + G A GBM 25676184 + 25676164 25676204 41 CACGCTGGGCTCCAACATCGGCACCACCACCACCGCCATCC CACGCTGGGCTCCAACATCAGCACCACCACCACCGCCATCC < 41bp 0.540303343890556 0.750287342267696 NA NA prediction 0.41996799675428 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25676184 chr4:25676183 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_29105 0 0 0 0 2 SLC34A2 chr4:25676251 5'GT 25676251 Upstream 69bp 26567 chr17 55197627 55197627 1 + G T LIHC 55197628 + 55197608 55197648 41 TAGGTGGTGTTGATAAACCGGTCCCTGGTGGAGCGAGGCCT TAGGTGGTGTTGATAAACCTGTCCCTGGTGGAGCGAGGCCT < 41bp 0.677267073526591 0.887248965392378 NA NA prediction 0.419963783731573 Functional Gain - AKAP1 ENSG00000121057 CDS Human protein_coding chr17:55197628 chr17:55197627 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29106 0 0 1 0 1 AKAP1 chr17:55197611 3'AG 55197611 Downstream 17bp 26568 chr8 21955042 21955042 1 + C T SKCM 21955043 + 21955023 21955063 41 TCAGTACCCCCCAGGCATGCGGCAGCAGGTGTTCCAGTTCT TCAGTACCCCCCAGGCATGTGGCAGCAGGTGTTCCAGTTCT < 41bp 0.508074524304741 0.718054593794719 NA NA prediction 0.419960138979956 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21955043 chr8:21955042 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_29107 0 0 1 1 2 FAM160B2 chr8:21955027 3'AG 21955027 Downstream 16bp 26569 chr8 21955042 21955042 1 + C T SKCM 21955043 + 21955023 21955063 41 TCAGTACCCCCCAGGCATGCGGCAGCAGGTGTTCCAGTTCT TCAGTACCCCCCAGGCATGTGGCAGCAGGTGTTCCAGTTCT < 41bp 0.508074524304741 0.718054593794719 NA NA prediction 0.419960138979956 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21955043 chr8:21955042 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_29107 0 0 1 1 2 FAM160B2 chr8:21955131 5'GT 21955131 Upstream 90bp 26570 chrX 2945399 2945399 1 + G A SKCM 2945400 + 2945380 2945420 41 GGAGGTATCCGTGTGCCAGGGATATTCCGGTGGCCGTCAGT GGAGGTATCCGTGTGCCAGAGATATTCCGGTGGCCGTCAGT < 41bp 0.527516418825478 0.737495264778427 NA NA prediction 0.419957691905897 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2945400 chrX:2945399 nonsynonymous SNV 0.905 4 20 hm7G_associated_SNPs_29108 0 0 0 0 1 ARSH chrX:2945354 3'AG 2945354 Downstream 46bp 26571 chrX 152991549 152991549 1 + G T UCEC 152991550 + 152991530 152991570 41 CAGAGGAGGCGCGGCGGAAGGGGGAGCTGCGCTACATGCAC CAGAGGAGGCGCGGCGGAATGGGGAGCTGCGCTACATGCAC < 41bp 0.378378414326084 0.709978478998944 NA NA prediction 0.419956957997887 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:152991550 chrX:152991549 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_29109 0 0 1 0 1 ABCD1 chrX:152991621 5'GT 152991621 Upstream 73bp 26572 chr1 171755031 171755031 1 + G T LUSC 171755032 + 171755012 171755052 41 TTTCTAGTCCCTCAGGGCCGGGAGACCGAGTGGCTCTTTGG TTTCTAGTCCCTCAGGGCCTGGAGACCGAGTGGCTCTTTGG < 41bp 0.696152187931152 0.906124707528157 NA NA prediction 0.419945039194011 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755032 chr1:171755031 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_29113 0 0 1 0 2 METTL13 chr1:171755019 3'AG 171755019 Downstream 13bp 26573 chr1 171755031 171755031 1 + G T LUSC 171755032 + 171755012 171755052 41 TTTCTAGTCCCTCAGGGCCGGGAGACCGAGTGGCTCTTTGG TTTCTAGTCCCTCAGGGCCTGGAGACCGAGTGGCTCTTTGG < 41bp 0.696152187931152 0.906124707528157 NA NA prediction 0.419945039194011 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755032 chr1:171755031 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_29113 0 0 1 0 2 METTL13 chr1:171755027 3'AG 171755027 Downstream 5bp 26574 chr14 93107606 93107606 1 + G T LUSC 93107607 + 93107587 93107627 41 TTACTGCCCTTCACACTGCGGCTACCCCAGGCCATCCTTGA TTACTGCCCTTCACACTGCTGCTACCCCAGGCCATCCTTGA < 41bp 0.357662152231236 0.709971591308733 NA NA prediction 0.419943182617467 Functional Gain - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93107607 chr14:93107606 nonsynonymous SNV 0.783 3 20 hm7G_associated_SNPs_29114 0 0 0 0 2 RIN3 chr14:93107583 3'AG 93107583 Downstream 24bp 26575 chr14 93107606 93107606 1 + G T LUSC 93107607 + 93107587 93107627 41 TTACTGCCCTTCACACTGCGGCTACCCCAGGCCATCCTTGA TTACTGCCCTTCACACTGCTGCTACCCCAGGCCATCCTTGA < 41bp 0.357662152231236 0.709971591308733 NA NA prediction 0.419943182617467 Functional Gain - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93107607 chr14:93107606 nonsynonymous SNV 0.783 3 20 hm7G_associated_SNPs_29114 0 0 0 0 2 RIN3 chr14:93107674 5'GT 93107674 Upstream 69bp 26576 chr7 117175331 117175331 1 + C T SKCM 117175332 + 117175312 117175352 41 TGGCACATTTCGTGTGGATCGCTCCTTTGCAAGTGGCACTC TGGCACATTTCGTGTGGATTGCTCCTTTGCAAGTGGCACTC < 41bp 0.501838135627137 0.711801302851524 NA NA prediction 0.419926334448774 Functional Gain - CFTR ENSG00000001626 CDS Human protein_coding chr7:117175332 chr7:117175331 synonymous SNV . 0 20 hm7G_associated_SNPs_29115 0 0 0 0 1 CFTR chr7:117175302 3'AG 117175302 Downstream 30bp 26577 chr3 1424651 1424651 1 + G T LUAD 1424652 + 1424632 1424672 41 CCAGAAGAACTGCAGAATGGGGAGGGATTTGGATATATCAT CCAGAAGAACTGCAGAATGTGGAGGGATTTGGATATATCAT < 41bp 0.385392560921313 0.709962692506768 NA NA prediction 0.419925385013536 Functional Gain - CNTN6 ENSG00000134115 CDS Human protein_coding chr3:1424652 chr3:1424651 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29116 0 0 0 0 1 CNTN6 chr3:1424626 3'AG 1424626 Downstream 26bp 26578 chr11 8111703 8111703 1 + C T LUAD 8111704 + 8111684 8111724 41 TGGGCGGCCCCGGAGCCGGCGGGCCCGGCAGTCAGAGGAAC TGGGCGGCCCCGGAGCCGGTGGGCCCGGCAGTCAGAGGAAC < 41bp 0.524502361013884 0.734464971404238 NA NA prediction 0.419925220780708 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8111704 chr11:8111703 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29117 0 0 1 0 2 TUB chr11:8111616 3'AG 8111616 Downstream 88bp 26579 chr11 8111703 8111703 1 + C T LUAD 8111704 + 8111684 8111724 41 TGGGCGGCCCCGGAGCCGGCGGGCCCGGCAGTCAGAGGAAC TGGGCGGCCCCGGAGCCGGTGGGCCCGGCAGTCAGAGGAAC < 41bp 0.524502361013884 0.734464971404238 NA NA prediction 0.419925220780708 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8111704 chr11:8111703 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29117 0 0 1 0 2 TUB chr11:8111778 5'GT 8111778 Upstream 76bp 26580 chr13 113772772 113772772 1 + G A rs77121822 113772773 + 113772753 113772793 41 GGGGATGAGCAGAGCCGGCGGGTGGCGCAGGTCATCATCCC GGGGATGAGCAGAGCCGGCAGGTGGCGCAGGTCATCATCCC < 41bp 0.561771123589965 0.771731325585505 NA NA prediction 0.419920403991081 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113772773 chr13:113772772 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_29119 0 0 0 0 1 F7 chr13:113772727 3'AG 113772727 Downstream 46bp 26581 chr19 17379820 17379820 1 + G A rs199925580 17379821 + 17379801 17379841 41 CCTCAACACTTCAGGAGCCGGCCCTAAGTCCTGGCAGGTGC CCTCAACACTTCAGGAGCCAGCCCTAAGTCCTGGCAGGTGC < 41bp 0.556997313571671 0.766956087475066 NA NA prediction 0.419917547806792 Functional Gain - BABAM1 ENSG00000105393;ENSG00000269307 CDS Human other chr19:17379821 chr19:17379820 nonsynonymous SNV 0.019 1 20 hm7G_associated_SNPs_29120 0 0 1 0 1 BABAM1 chr19:17379900 5'GT 17379900 Upstream 81bp 26582 chr4 17517118 17517118 1 + G A SKCM 17517119 + 17517099 17517139 41 AGTGCGGCAGTGTGGGCTTGGGGGCCGCCAATCCCAATTCA AGTGCGGCAGTGTGGGCTTAGGGGCCGCCAATCCCAATTCA < 41bp 0.510128188680806 0.720085423666869 NA NA prediction 0.419914469972126 Functional Gain - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17517119 chr4:17517118 nonsynonymous SNV 0.879 4 20 hm7G_associated_SNPs_29121 0 0 0 0 1 CLRN2 chr4:17517142 5'GT 17517142 Upstream 25bp 26583 chr22 23653935 23653935 1 + C T SKCM 23653936 + 23653916 23653956 41 GCCAGTGCGTGGAGGAGATCGAGCGCCGAGGCATGGAGGAG GCCAGTGCGTGGAGGAGATTGAGCGCCGAGGCATGGAGGAG < 41bp 0.498109413406264 0.709956679803492 NA NA prediction 0.419913359606984 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23653936 chr22:23653935 synonymous SNV . 0 20 hm7G_associated_SNPs_29122 0 0 0 0 2 BCR chr22:23653884 3'AG 23653884 Downstream 52bp 26584 chr22 23653935 23653935 1 + C T SKCM 23653936 + 23653916 23653956 41 GCCAGTGCGTGGAGGAGATCGAGCGCCGAGGCATGGAGGAG GCCAGTGCGTGGAGGAGATTGAGCGCCGAGGCATGGAGGAG < 41bp 0.498109413406264 0.709956679803492 NA NA prediction 0.419913359606984 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23653936 chr22:23653935 synonymous SNV . 0 20 hm7G_associated_SNPs_29122 0 0 0 0 2 BCR chr22:23654023 5'GT 23654023 Upstream 89bp 26585 chr17 2266780 2266780 1 + G A rs534730966 2266781 + 2266761 2266801 41 CCGGAAACGGCACTCAAGCGGCAGCGCGTCGGAGGACAGGC CCGGAAACGGCACTCAAGCAGCAGCGCGTCGGAGGACAGGC < 41bp 0.477147229137428 0.709955303227709 NA NA prediction 0.419910606455418 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2266781 chr17:2266780 nonsynonymous SNV 0.883 1 20 hm7G_associated_SNPs_29123 0 0 1 0 1 SGSM2 chr17:2266759 3'AG 2266759 Downstream 22bp 26586 chr16 31382509 31382509 1 + G A LGG 31382510 + 31382490 31382530 41 TGGTGGACCTGGCTGTGGGGGCCCGGGGCCAGGTGCTCCTG TGGTGGACCTGGCTGTGGGAGCCCGGGGCCAGGTGCTCCTG < 41bp 0.48376196740695 0.709954587753976 NA NA prediction 0.419909175507951 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382510 chr16:31382509 synonymous SNV . 0 20 hm7G_associated_SNPs_29124 0 0 0 0 1 ITGAX chr16:31382535 5'GT 31382535 Upstream 27bp 26587 chr17 4058013 4058013 1 + C T UCEC 4058014 + 4057994 4058034 41 GAGGATGGGCTGCCCACCCCGGCACTGACCCAGGTAGAAGC GAGGATGGGCTGCCCACCCTGGCACTGACCCAGGTAGAAGC < 41bp 0.522425398372858 0.73237720954338 NA NA prediction 0.419903622341043 Functional Gain - CYB5D2 ENSG00000167740 CDS Human protein_coding chr17:4058014 chr17:4058013 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_29127 0 0 1 0 1 CYB5D2 chr17:4057968 3'AG 4057968 Downstream 46bp 26588 chr13 115007620 115007620 1 + C T UCEC 115007621 + 115007601 115007641 41 GAGTTCTATCTGTCTTCTACGCGGGAAAATCTATGATGCTC GAGTTCTATCTGTCTTCTATGCGGGAAAATCTATGATGCTC < 41bp 0.501717995209381 0.711664445258778 NA NA prediction 0.419892900098795 Functional Gain - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115007621 chr13:115007620 nonsynonymous SNV 0.279 3 20 hm7G_associated_SNPs_29129 0 0 1 0 1 CDC16 chr13:115007596 3'AG 115007596 Downstream 25bp 26589 chr13 37011820 37011820 1 + G A STAD 37011821 + 37011801 37011841 41 AAATGCCTTCCCTCCAGCTGGAAAGAAAGCACTCCCTGACT AAATGCCTTCCCTCCAGCTAGAAAGAAAGCACTCCCTGACT < 41bp 0.50336814064069 0.713311964041259 NA NA prediction 0.419887646801137 Functional Gain - CCNA1 ENSG00000133101 CDS Human protein_coding chr13:37011821 chr13:37011820 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_29131 0 0 0 0 1 CCNA1 chr13:37011766 3'AG 37011766 Downstream 55bp 26590 chr11 64108775 64108775 1 + G A CESC 64108776 + 64108756 64108796 41 CAGCTGGAAGGCGTTCTTCGGCTACTGTTGGGAGCGTCAGT CAGCTGGAAGGCGTTCTTCAGCTACTGTTGGGAGCGTCAGT < 41bp 0.489518232308225 0.709942753010021 NA NA prediction 0.419885506020043 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64108776 chr11:64108775 nonsynonymous SNV 0.970 0 20 hm7G_associated_SNPs_29132 0 0 1 0 2 CCDC88B chr11:64108742 3'AG 64108742 Downstream 34bp 26591 chr11 64108775 64108775 1 + G A CESC 64108776 + 64108756 64108796 41 CAGCTGGAAGGCGTTCTTCGGCTACTGTTGGGAGCGTCAGT CAGCTGGAAGGCGTTCTTCAGCTACTGTTGGGAGCGTCAGT < 41bp 0.489518232308225 0.709942753010021 NA NA prediction 0.419885506020043 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64108776 chr11:64108775 nonsynonymous SNV 0.970 0 20 hm7G_associated_SNPs_29132 0 0 1 0 2 CCDC88B chr11:64108800 5'GT 64108800 Upstream 26bp 26592 chr8 75757681 75757681 1 + G T ESCA 75757682 + 75757662 75757702 41 TGCCAAAACATGAATGTTTGGGGATCTGTGTGGCGACGTGC TGCCAAAACATGAATGTTTTGGGATCTGTGTGGCGACGTGC < 41bp 0.689710716565631 0.89965206692331 NA NA prediction 0.419882700715358 Functional Gain - PI15 ENSG00000137558 CDS Human protein_coding chr8:75757682 chr8:75757681 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_29133 0 0 1 0 2 PI15 chr8:75757617 3'AG 75757617 Downstream 65bp 26593 chr8 75757681 75757681 1 + G T ESCA 75757682 + 75757662 75757702 41 TGCCAAAACATGAATGTTTGGGGATCTGTGTGGCGACGTGC TGCCAAAACATGAATGTTTTGGGATCTGTGTGGCGACGTGC < 41bp 0.689710716565631 0.89965206692331 NA NA prediction 0.419882700715358 Functional Gain - PI15 ENSG00000137558 CDS Human protein_coding chr8:75757682 chr8:75757681 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_29133 0 0 1 0 2 PI15 chr8:75757732 5'GT 75757732 Upstream 52bp 26594 chr17 72443103 72443103 1 + C T LGG 72443104 + 72443084 72443124 41 TCGGCCCAGAGCCACCAGGCGGCCACACCGCCGAAAGACGG TCGGCCCAGAGCCACCAGGTGGCCACACCGCCGAAAGACGG < 41bp 0.507169478792729 0.717106529023912 NA NA prediction 0.419874100462366 Functional Gain - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72443104 chr17:72443103 nonsynonymous SNV 0.093 0 20 hm7G_associated_SNPs_29134 0 0 1 0 1 GPRC5C chr17:72443137 5'GT 72443137 Upstream 35bp 26595 chr17 80545020 80545020 1 + C T SKCM 80545021 + 80545001 80545041 41 CAGACGGCACAGACCACCCCGGTCCAGACGGTGACCATAGT CAGACGGCACAGACCACCCTGGTCCAGACGGTGACCATAGT < 41bp 0.529871960700793 0.739808759623613 NA NA prediction 0.419873597845641 Functional Gain - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80545021 chr17:80545020 nonsynonymous SNV 0.759 4 20 hm7G_associated_SNPs_29135 0 0 1 0 1 FOXK2 chr17:80544939 3'AG 80544939 Downstream 82bp 26596 chr2 88478351 88478351 1 + C T rs116861191 88478352 + 88478332 88478372 41 CGATCAAGACTGTGTTTGCCGATGTGGCTTTTGTCAAGAAG CGATCAAGACTGTGTTTGCTGATGTGGCTTTTGTCAAGAAG < 41bp 0.528993695178618 0.738929555473755 NA NA prediction 0.419871720590274 Functional Gain - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88478352 chr2:88478351 synonymous SNV . 0 20 hm7G_associated_SNPs_29136 0 0 0 0 1 THNSL2 chr2:88478302 3'AG 88478302 Downstream 50bp 26597 chr8 22865211 22865211 1 + C T STAD 22865212 + 22865192 22865232 41 CACCAAGGCCTTCCACGTCCGCCGGACCAACCGGGTTAAGG CACCAAGGCCTTCCACGTCTGCCGGACCAACCGGGTTAAGG < 41bp 0.512268019703321 0.722200728348182 NA NA prediction 0.419865417289722 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865212 chr8:22865211 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_29137 0 0 0 0 1 RHOBTB2 chr8:22865259 5'GT 22865259 Upstream 49bp 26598 chr10 104356995 104356995 1 + C T LUSC 104356996 + 104356976 104357016 41 GCCGGCCCCCCGAGGATGACGAGGACAGCCGGAGCATCTGC GCCGGCCCCCCGAGGATGATGAGGACAGCCGGAGCATCTGC < 41bp 0.515211655397826 0.72514417844837 NA NA prediction 0.419865046101089 Functional Gain - SUFU ENSG00000107882 CDS Human protein_coding chr10:104356996 chr10:104356995 synonymous SNV . 0 20 hm7G_associated_SNPs_29138 0 0 1 0 2 SUFU chr10:104356897 3'AG 104356897 Downstream 99bp 26599 chr10 104356995 104356995 1 + C T LUSC 104356996 + 104356976 104357016 41 GCCGGCCCCCCGAGGATGACGAGGACAGCCGGAGCATCTGC GCCGGCCCCCCGAGGATGATGAGGACAGCCGGAGCATCTGC < 41bp 0.515211655397826 0.72514417844837 NA NA prediction 0.419865046101089 Functional Gain - SUFU ENSG00000107882 CDS Human protein_coding chr10:104356996 chr10:104356995 synonymous SNV . 0 20 hm7G_associated_SNPs_29138 0 0 1 0 2 SUFU chr10:104357050 5'GT 104357050 Upstream 56bp 26600 chr1 12024322 12024322 1 + C T LGG 12024323 + 12024303 12024343 41 ATGGCTACTATGCCCGTTCCGAGGACTACGTGGACATTGTG ATGGCTACTATGCCCGTTCTGAGGACTACGTGGACATTGTG < 41bp 0.529794609656956 0.739724086601884 NA NA prediction 0.419858953889856 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12024323 chr1:12024322 synonymous SNV . 0 20 hm7G_associated_SNPs_29139 0 0 1 0 2 PLOD1 chr1:12024232 3'AG 12024232 Downstream 91bp 26601 chr1 12024322 12024322 1 + C T LGG 12024323 + 12024303 12024343 41 ATGGCTACTATGCCCGTTCCGAGGACTACGTGGACATTGTG ATGGCTACTATGCCCGTTCTGAGGACTACGTGGACATTGTG < 41bp 0.529794609656956 0.739724086601884 NA NA prediction 0.419858953889856 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12024323 chr1:12024322 synonymous SNV . 0 20 hm7G_associated_SNPs_29139 0 0 1 0 2 PLOD1 chr1:12024357 5'GT 12024357 Upstream 36bp 26602 chr19 45150618 45150618 1 + G A KIRC 45150619 + 45150599 45150639 41 TCACAGCTGACTTGGGCGCGGCATGGTGAATCTGGCAGCAT TCACAGCTGACTTGGGCGCAGCATGGTGAATCTGGCAGCAT < 41bp 0.545617925323649 0.755547355575314 NA NA prediction 0.419858860503329 Functional Gain - PVR ENSG00000073008 CDS Human protein_coding chr19:45150619 chr19:45150618 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_29140 0 0 1 0 1 PVR chr19:45150572 3'AG 45150572 Downstream 47bp 26603 chr16 68381149 68381149 1 + C T UCEC 68381150 + 68381130 68381170 41 GCGTGTGCCTGTGTGTCAGCGATGGCAGCCTGCTCTCCGTG GCGTGTGCCTGTGTGTCAGTGATGGCAGCCTGCTCTCCGTG < 41bp 0.513625680117364 0.72355410809879 NA NA prediction 0.419856855962853 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68381150 chr16:68381149 synonymous SNV . 0 20 hm7G_associated_SNPs_29141 0 0 1 0 2 PRMT7 chr16:68381114 3'AG 68381114 Downstream 36bp 26604 chr16 68381149 68381149 1 + C T UCEC 68381150 + 68381130 68381170 41 GCGTGTGCCTGTGTGTCAGCGATGGCAGCCTGCTCTCCGTG GCGTGTGCCTGTGTGTCAGTGATGGCAGCCTGCTCTCCGTG < 41bp 0.513625680117364 0.72355410809879 NA NA prediction 0.419856855962853 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68381150 chr16:68381149 synonymous SNV . 0 20 hm7G_associated_SNPs_29141 0 0 1 0 2 PRMT7 chr16:68381197 5'GT 68381197 Upstream 49bp 26605 chr22 25598691 25598691 1 + G A COAD 25598692 + 25598672 25598712 41 GCAAACGCTGCGAGCTCTCGGCCGAGTGCCCCAGCCTGACC GCAAACGCTGCGAGCTCTCAGCCGAGTGCCCCAGCCTGACC < 41bp 0.560077447693633 0.769992899255067 NA NA prediction 0.419830903122867 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598692 chr22:25598691 synonymous SNV . 0 20 hm7G_associated_SNPs_29143 0 0 0 0 2 CRYBB3 chr22:25598641 3'AG 25598641 Downstream 51bp 26606 chr22 25598691 25598691 1 + G A COAD 25598692 + 25598672 25598712 41 GCAAACGCTGCGAGCTCTCGGCCGAGTGCCCCAGCCTGACC GCAAACGCTGCGAGCTCTCAGCCGAGTGCCCCAGCCTGACC < 41bp 0.560077447693633 0.769992899255067 NA NA prediction 0.419830903122867 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25598692 chr22:25598691 synonymous SNV . 0 20 hm7G_associated_SNPs_29143 0 0 0 0 2 CRYBB3 chr22:25598759 5'GT 25598759 Upstream 69bp 26607 chr19 18242789 18242789 1 + C T UCEC 18242790 + 18242770 18242810 41 TGGCCCGCCTGTACTTCGCCGAGACGGTGTTGGCGCTGGAG TGGCCCGCCTGTACTTCGCTGAGACGGTGTTGGCGCTGGAG < 41bp 0.504801856644004 0.714715374207262 NA NA prediction 0.419827035126518 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18242790 chr19:18242789 synonymous SNV . 0 20 hm7G_associated_SNPs_29145 0 0 1 0 2 MAST3 chr19:18242719 3'AG 18242719 Downstream 71bp 26608 chr19 18242789 18242789 1 + C T UCEC 18242790 + 18242770 18242810 41 TGGCCCGCCTGTACTTCGCCGAGACGGTGTTGGCGCTGGAG TGGCCCGCCTGTACTTCGCTGAGACGGTGTTGGCGCTGGAG < 41bp 0.504801856644004 0.714715374207262 NA NA prediction 0.419827035126518 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18242790 chr19:18242789 synonymous SNV . 0 20 hm7G_associated_SNPs_29145 0 0 1 0 2 MAST3 chr19:18242857 5'GT 18242857 Upstream 69bp 26609 chr5 6738808 6738808 1 + G T LUAD 6738809 + 6738789 6738829 41 CTTTCAGGTACAGATATTTGGCAGCTTTAGTACAGGTCTTT CTTTCAGGTACAGATATTTTGCAGCTTTAGTACAGGTCTTT < 41bp 0.365010379493819 0.709904837522045 NA NA prediction 0.41980967504409 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6738809 chr5:6738808 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_29146 0 0 1 0 2 PAPD7 chr5:6738796 3'AG 6738796 Downstream 13bp 26610 chr5 6738808 6738808 1 + G T LUAD 6738809 + 6738789 6738829 41 CTTTCAGGTACAGATATTTGGCAGCTTTAGTACAGGTCTTT CTTTCAGGTACAGATATTTTGCAGCTTTAGTACAGGTCTTT < 41bp 0.365010379493819 0.709904837522045 NA NA prediction 0.41980967504409 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6738809 chr5:6738808 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_29146 0 0 1 0 2 PAPD7 chr5:6738842 5'GT 6738842 Upstream 35bp 26611 chr20 62321128 62321128 1 + G A rs35640778 62321129 + 62321109 62321149 41 TCTGGGCAGGAGTGGTACCGGCAGCAGGCGTCCAGGGCTGT TCTGGGCAGGAGTGGTACCAGCAGCAGGCGTCCAGGGCTGT < 41bp 0.548325156982854 0.758224068009412 NA NA prediction 0.419797822053116 Functional Gain - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62321129 chr20:62321128 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_29152 0 1 1 0 1 RTEL1 chr20:62321218 5'GT 62321218 Upstream 91bp 26612 chr19 50216089 50216089 1 + G T UCEC 50216090 + 50216070 50216110 41 CCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTGTGA CCCGGACTATGTTTCCTCATGCGGTGGATTCGGGCCTGTGA < 41bp 0.376033655864893 0.709898639060324 NA NA prediction 0.419797278120647 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50216090 chr19:50216089 nonsynonymous SNV 0.518 4 20 hm7G_associated_SNPs_29153 0 0 0 0 2 CPT1C chr19:50215993 3'AG 50215993 Downstream 97bp 26613 chr19 50216089 50216089 1 + G T UCEC 50216090 + 50216070 50216110 41 CCCGGACTATGTTTCCTCAGGCGGTGGATTCGGGCCTGTGA CCCGGACTATGTTTCCTCATGCGGTGGATTCGGGCCTGTGA < 41bp 0.376033655864893 0.709898639060324 NA NA prediction 0.419797278120647 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50216090 chr19:50216089 nonsynonymous SNV 0.518 4 20 hm7G_associated_SNPs_29153 0 0 0 0 2 CPT1C chr19:50216106 5'GT 50216106 Upstream 18bp 26614 chr2 220396564 220396564 1 + G A PRAD 220396565 + 220396545 220396585 41 GGCAGGGGGCATGGGCAGTGGCCTGGAGATCATGCTGGACA GGCAGGGGGCATGGGCAGTAGCCTGGAGATCATGCTGGACA < 41bp 0.487744664694471 0.709896738244428 NA NA prediction 0.419793476488856 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396565 chr2:220396564 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_29154 0 0 0 0 2 ASIC4 chr2:220396480 3'AG 220396480 Downstream 85bp 26615 chr2 220396564 220396564 1 + G A PRAD 220396565 + 220396545 220396585 41 GGCAGGGGGCATGGGCAGTGGCCTGGAGATCATGCTGGACA GGCAGGGGGCATGGGCAGTAGCCTGGAGATCATGCTGGACA < 41bp 0.487744664694471 0.709896738244428 NA NA prediction 0.419793476488856 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396565 chr2:220396564 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_29154 0 0 0 0 2 ASIC4 chr2:220396624 5'GT 220396624 Upstream 61bp 26616 chrX 69711983 69711983 1 + G A CESC 69711984 + 69711964 69712004 41 TTTGATTATGATCGGACTCGGGACAGCTGCCTGCCAAGCCA TTTGATTATGATCGGACTCAGGACAGCTGCCTGCCAAGCCA < 41bp 0.505035598044899 0.714930924982488 NA NA prediction 0.419790653875179 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69711984 chrX:69711983 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_29156 0 0 1 0 1 DLG3 chrX:69711957 3'AG 69711957 Downstream 27bp 26617 chr19 41089372 41089372 1 + C T COAD 41089373 + 41089353 41089393 41 TCCTCCTGGGCTGCAACAACGGCTCCATTTACTACGTGGGT TCCTCCTGGGCTGCAACAATGGCTCCATTTACTACGTGGGT < 41bp 0.499568465649827 0.709894534492596 NA NA prediction 0.419789068985191 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41089373 chr19:41089372 synonymous SNV . 0 20 hm7G_associated_SNPs_29157 0 0 1 0 2 SHKBP1 chr19:41089304 3'AG 41089304 Downstream 69bp 26618 chr19 41089372 41089372 1 + C T COAD 41089373 + 41089353 41089393 41 TCCTCCTGGGCTGCAACAACGGCTCCATTTACTACGTGGGT TCCTCCTGGGCTGCAACAATGGCTCCATTTACTACGTGGGT < 41bp 0.499568465649827 0.709894534492596 NA NA prediction 0.419789068985191 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41089373 chr19:41089372 synonymous SNV . 0 20 hm7G_associated_SNPs_29157 0 0 1 0 2 SHKBP1 chr19:41089391 5'GT 41089391 Upstream 20bp 26619 chr17 27026813 27026813 1 + C T UCEC 27026814 + 27026794 27026834 41 CCTAGGATAGAATATGTAACGGTGACTCCAGAGGGATTCCG CCTAGGATAGAATATGTAATGGTGACTCCAGAGGGATTCCG < 41bp 0.504258595592304 0.714152855301207 NA NA prediction 0.419788519417806 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27026814 chr17:27026813 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_29158 0 0 1 0 2 SUPT6H chr17:27026799 3'AG 27026799 Downstream 15bp 26620 chr17 27026813 27026813 1 + C T UCEC 27026814 + 27026794 27026834 41 CCTAGGATAGAATATGTAACGGTGACTCCAGAGGGATTCCG CCTAGGATAGAATATGTAATGGTGACTCCAGAGGGATTCCG < 41bp 0.504258595592304 0.714152855301207 NA NA prediction 0.419788519417806 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27026814 chr17:27026813 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_29158 0 0 1 0 2 SUPT6H chr17:27026911 5'GT 27026911 Upstream 99bp 26621 chr21 43711228 43711228 1 + C T UCEC 43711229 + 43711209 43711249 41 GGAGATGGGAGTCTTTCTTCGGGAACACCTGAACTACTGGT GGAGATGGGAGTCTTTCTTTGGGAACACCTGAACTACTGGT < 41bp 0.495535837493425 0.709893555076368 NA NA prediction 0.419787110152735 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711229 chr21:43711228 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_29159 0 0 0 0 2 ABCG1 chr21:43711202 3'AG 43711202 Downstream 27bp 26622 chr21 43711228 43711228 1 + C T UCEC 43711229 + 43711209 43711249 41 GGAGATGGGAGTCTTTCTTCGGGAACACCTGAACTACTGGT GGAGATGGGAGTCTTTCTTTGGGAACACCTGAACTACTGGT < 41bp 0.495535837493425 0.709893555076368 NA NA prediction 0.419787110152735 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711229 chr21:43711228 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_29159 0 0 0 0 2 ABCG1 chr21:43711302 5'GT 43711302 Upstream 75bp 26623 chr1 1956995 1956995 1 + G A SKCM 1956996 + 1956976 1957016 41 TCCTGCACCAGAGCTGGCGGGACAGCAGGCTCTCCTACAAC TCCTGCACCAGAGCTGGCGAGACAGCAGGCTCTCCTACAAC < 41bp 0.490037892293514 0.709892094850732 NA NA prediction 0.419784189701465 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1956996 chr1:1956995 synonymous SNV . 0 20 hm7G_associated_SNPs_29160 0 0 0 0 1 GABRD chr1:1956957 3'AG 1956957 Downstream 39bp 26624 chr1 28211887 28211887 1 + G A UCEC 28211888 + 28211868 28211908 41 GCCAGAGTTCATCAAGGATGGCTCCAGTACGTACAGCAAGA GCCAGAGTTCATCAAGGATAGCTCCAGTACGTACAGCAAGA < 41bp 0.544832606646406 0.754719417431679 NA NA prediction 0.419773621570545 Functional Gain - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28211888 chr1:28211887 stopgain 0.001 0 20 hm7G_associated_SNPs_29163 0 0 0 0 2 THEMIS2 chr1:28211806 3'AG 28211806 Downstream 82bp 26625 chr1 28211887 28211887 1 + G A UCEC 28211888 + 28211868 28211908 41 GCCAGAGTTCATCAAGGATGGCTCCAGTACGTACAGCAAGA GCCAGAGTTCATCAAGGATAGCTCCAGTACGTACAGCAAGA < 41bp 0.544832606646406 0.754719417431679 NA NA prediction 0.419773621570545 Functional Gain - THEMIS2 ENSG00000130775 CDS Human protein_coding chr1:28211888 chr1:28211887 stopgain 0.001 0 20 hm7G_associated_SNPs_29163 0 0 0 0 2 THEMIS2 chr1:28211962 5'GT 28211962 Upstream 76bp 26626 chr4 8295852 8295852 1 + G A rs150588431 8295853 + 8295833 8295873 41 TCAACACGCTCAAGGTCACGGCTGGCATCTCCTTTGCCATC TCAACACGCTCAAGGTCACAGCTGGCATCTCCTTTGCCATC < 41bp 0.528250190364676 0.738135223536644 NA NA prediction 0.419770066343937 Functional Gain - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8295853 chr4:8295852 synonymous SNV . 0 20 hm7G_associated_SNPs_29164 0 0 1 0 2 HTRA3 chr4:8295814 3'AG 8295814 Downstream 39bp 26627 chr4 8295852 8295852 1 + G A rs150588431 8295853 + 8295833 8295873 41 TCAACACGCTCAAGGTCACGGCTGGCATCTCCTTTGCCATC TCAACACGCTCAAGGTCACAGCTGGCATCTCCTTTGCCATC < 41bp 0.528250190364676 0.738135223536644 NA NA prediction 0.419770066343937 Functional Gain - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8295853 chr4:8295852 synonymous SNV . 0 20 hm7G_associated_SNPs_29164 0 0 1 0 2 HTRA3 chr4:8295928 5'GT 8295928 Upstream 77bp 26628 chrX 47428168 47428168 1 + G A UCEC 47428169 + 47428149 47428189 41 TGGGCTTCATGACCCGGCCGGGATTTGCCATCATCACACAG TGGGCTTCATGACCCGGCCAGGATTTGCCATCATCACACAG < 41bp 0.495359560119035 0.709883107577734 NA NA prediction 0.419766215155468 Functional Gain - ARAF ENSG00000078061 CDS Human protein_coding chrX:47428169 chrX:47428168 synonymous SNV . 0 20 hm7G_associated_SNPs_29165 0 0 1 0 1 ARAF chrX:47428117 3'AG 47428117 Downstream 52bp 26629 chr5 68413124 68413124 1 + C T UCEC 68413125 + 68413105 68413145 41 AATAGTCTGGGCCTGATCTCGGATGGATTCCACATGCTTTT AATAGTCTGGGCCTGATCTTGGATGGATTCCACATGCTTTT < 41bp 0.508788737183229 0.718669458672997 NA NA prediction 0.419761442979536 Functional Gain - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68413125 chr5:68413124 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29166 0 0 1 0 2 SLC30A5 chr5:68413066 3'AG 68413066 Downstream 59bp 26630 chr5 68413124 68413124 1 + C T UCEC 68413125 + 68413105 68413145 41 AATAGTCTGGGCCTGATCTCGGATGGATTCCACATGCTTTT AATAGTCTGGGCCTGATCTTGGATGGATTCCACATGCTTTT < 41bp 0.508788737183229 0.718669458672997 NA NA prediction 0.419761442979536 Functional Gain - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68413125 chr5:68413124 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29166 0 0 1 0 2 SLC30A5 chr5:68413223 5'GT 68413223 Upstream 100bp 26631 chr19 19349171 19349171 1 + C T STAD 19349172 + 19349152 19349192 41 AGGACTGCCGCCGCCGCTCCGGCCACCTGACCAGCGTCCAC AGGACTGCCGCCGCCGCTCTGGCCACCTGACCAGCGTCCAC < 41bp 0.49437778412424 0.709877405760788 NA NA prediction 0.419754811521575 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349172 chr19:19349171 synonymous SNV . 0 20 hm7G_associated_SNPs_29170 0 0 0 0 1 NCAN chr19:19349220 5'GT 19349220 Upstream 50bp 26632 chr13 113771153 113771153 1 + G A LUAD 113771154 + 113771134 113771174 41 CCCAAGGCCGAATTGTGGGGGGCAAGGTGTGCCCCAAAGGG CCCAAGGCCGAATTGTGGGAGGCAAGGTGTGCCCCAAAGGG < 41bp 0.535135731939467 0.745013097577608 NA NA prediction 0.419754731276283 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113771154 chr13:113771153 synonymous SNV . 0 20 hm7G_associated_SNPs_29171 0 0 1 0 2 F7 chr13:113771080 3'AG 113771080 Downstream 74bp 26633 chr13 113771153 113771153 1 + G A LUAD 113771154 + 113771134 113771174 41 CCCAAGGCCGAATTGTGGGGGGCAAGGTGTGCCCCAAAGGG CCCAAGGCCGAATTGTGGGAGGCAAGGTGTGCCCCAAAGGG < 41bp 0.535135731939467 0.745013097577608 NA NA prediction 0.419754731276283 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113771154 chr13:113771153 synonymous SNV . 0 20 hm7G_associated_SNPs_29171 0 0 1 0 2 F7 chr13:113771189 5'GT 113771189 Upstream 37bp 26634 chr9 96428329 96428329 1 + C T rs116444936 96428330 + 96428310 96428350 41 ACGAAGCCAAAGCTGGACTCGGCAGCGTACAAGGTGAGCTG ACGAAGCCAAAGCTGGACTTGGCAGCGTACAAGGTGAGCTG < 41bp 0.523163859775693 0.733028581900309 NA NA prediction 0.419729444249233 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96428330 chr9:96428329 nonsynonymous SNV 0.038 1 20 hm7G_associated_SNPs_29174 0 0 1 0 2 PHF2 chr9:96428272 3'AG 96428272 Downstream 58bp 26635 chr9 96428329 96428329 1 + C T rs116444936 96428330 + 96428310 96428350 41 ACGAAGCCAAAGCTGGACTCGGCAGCGTACAAGGTGAGCTG ACGAAGCCAAAGCTGGACTTGGCAGCGTACAAGGTGAGCTG < 41bp 0.523163859775693 0.733028581900309 NA NA prediction 0.419729444249233 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96428330 chr9:96428329 nonsynonymous SNV 0.038 1 20 hm7G_associated_SNPs_29174 0 0 1 0 2 PHF2 chr9:96428342 5'GT 96428342 Upstream 14bp 26636 chr19 11018764 11018764 1 + G T BLCA 11018765 + 11018745 11018785 41 CCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGCGAG CCTGCCGGGGCCACACCCTTGAGCGGTCTGTGTTCAGCGAG < 41bp 0.352472454652155 0.709864577114148 NA NA prediction 0.419729154228296 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11018765 chr19:11018764 synonymous SNV . 0 20 hm7G_associated_SNPs_29175 0 0 1 0 2 CARM1 chr19:11018715 3'AG 11018715 Downstream 50bp 26637 chr19 11018764 11018764 1 + G T BLCA 11018765 + 11018745 11018785 41 CCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGCGAG CCTGCCGGGGCCACACCCTTGAGCGGTCTGTGTTCAGCGAG < 41bp 0.352472454652155 0.709864577114148 NA NA prediction 0.419729154228296 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11018765 chr19:11018764 synonymous SNV . 0 20 hm7G_associated_SNPs_29175 0 0 1 0 2 CARM1 chr19:11018821 5'GT 11018821 Upstream 58bp 26638 chr17 72938124 72938124 1 + G A COAD 72938125 + 72938105 72938145 41 CATCGAGATGGTCTTCATCGGCGTCCAGGTGACAGGCTTCT CATCGAGATGGTCTTCATCAGCGTCCAGGTGACAGGCTTCT < 41bp 0.543939614718631 0.753802840211805 NA NA prediction 0.419726450986348 Functional Gain - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72938125 chr17:72938124 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_29176 0 0 0 0 1 OTOP3 chr17:72938132 5'GT 72938132 Upstream 9bp 26639 chr14 21550212 21550212 1 + G A rs114591848 21550213 + 21550193 21550233 41 GAACACGTGCTGCTGGGCCGGGCTAGGGGGCCAGACGGACC GAACACGTGCTGCTGGGCCAGGCTAGGGGGCCAGACGGACC < 41bp 0.540021991984472 0.749882703381763 NA NA prediction 0.419721422794581 Functional Gain - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21550213 chr14:21550212 nonsynonymous SNV 0.572 3 20 hm7G_associated_SNPs_29178 0 0 1 0 1 ARHGEF40 chr14:21550278 5'GT 21550278 Upstream 67bp 26640 chr15 75113559 75113559 1 + G A UCEC 75113560 + 75113540 75113580 41 AGGCCAAGCCAGGCCTGACGGAGGCTGGGTGAGAAGCCCTA AGGCCAAGCCAGGCCTGACAGAGGCTGGGTGAGAAGCCCTA < 41bp 0.513324183010035 0.723182898935067 NA NA prediction 0.419717431850066 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75113560 chr15:75113559 nonsynonymous SNV 0.384 1 20 hm7G_associated_SNPs_29179 0 0 0 0 1 LMAN1L chr15:75113567 5'GT 75113567 Upstream 9bp 26641 chr22 41545158 41545158 1 + C T CESC 41545159 + 41545139 41545179 41 TCCCTTTGGCTCCGTCCAGCGGTCAAGCTCCAGTGTCTCAA TCCCTTTGGCTCCGTCCAGTGGTCAAGCTCCAGTGTCTCAA < 41bp 0.52636597684727 0.736222361279229 NA NA prediction 0.419712768863919 Functional Gain - EP300 ENSG00000100393 CDS Human protein_coding chr22:41545159 chr22:41545158 synonymous SNV . 0 20 hm7G_associated_SNPs_29180 0 0 1 0 1 EP300 chr22:41545179 5'GT 41545179 Upstream 22bp 26642 chr11 94597950 94597950 1 + C T UCEC 94597951 + 94597931 94597971 41 GGCAGCTACGGAGAGAGCTCGCTGGAGGCCCACATCTGGCA GGCAGCTACGGAGAGAGCTTGCTGGAGGCCCACATCTGGCA < 41bp 0.499416220723224 0.709853748498907 NA NA prediction 0.419707496997815 Functional Gain - AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94597951 chr11:94597950 nonsynonymous SNV 0.860 0 20 hm7G_associated_SNPs_29181 0 0 1 0 2 AMOTL1 chr11:94597900 3'AG 94597900 Downstream 51bp 26643 chr11 94597950 94597950 1 + C T UCEC 94597951 + 94597931 94597971 41 GGCAGCTACGGAGAGAGCTCGCTGGAGGCCCACATCTGGCA GGCAGCTACGGAGAGAGCTTGCTGGAGGCCCACATCTGGCA < 41bp 0.499416220723224 0.709853748498907 NA NA prediction 0.419707496997815 Functional Gain - AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94597951 chr11:94597950 nonsynonymous SNV 0.860 0 20 hm7G_associated_SNPs_29181 0 0 1 0 2 AMOTL1 chr11:94598025 5'GT 94598025 Upstream 76bp 26644 chr12 57918762 57918762 1 + G A rs188660476 57918763 + 57918743 57918783 41 ACTTTGACCCTTTGGCCCCGGTGACCCCGGGTGGGGCTGGG ACTTTGACCCTTTGGCCCCAGTGACCCCGGGTGGGGCTGGG < 41bp 0.525195224032754 0.735048466382494 NA NA prediction 0.41970648469948 Functional Gain - MBD6 ENSG00000166987 CDS Human protein_coding chr12:57918763 chr12:57918762 synonymous SNV . 0 20 hm7G_associated_SNPs_29182 0 0 1 0 1 MBD6 chr12:57918736 3'AG 57918736 Downstream 27bp 26645 chr10 99338106 99338106 1 + G A BLCA 99338107 + 99338087 99338127 41 AAACGCAAGCAGAAGAAGCGGGACGCTCTGGCCGCCTCGCA AAACGCAAGCAGAAGAAGCAGGACGCTCTGGCCGCCTCGCA < 41bp 0.561717498089551 0.771569825168141 NA NA prediction 0.419704654157179 Functional Gain - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99338107 chr10:99338106 nonsynonymous SNV 0.918 3 20 hm7G_associated_SNPs_29183 0 0 0 0 1 ANKRD2 chr10:99338155 5'GT 99338155 Upstream 50bp 26646 chr7 128486806 128486806 1 + G A SKCM 128486807 + 128486787 128486827 41 GTTATCTCTCAGGGGAGCGGGCACCGGGGGCCTTGGCCTAG GTTATCTCTCAGGGGAGCGAGCACCGGGGGCCTTGGCCTAG < 41bp 0.509987091791831 0.719839083385548 NA NA prediction 0.419703983187433 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128486807 chr7:128486806 nonsynonymous SNV 0.426 5 20 hm7G_associated_SNPs_29184 0 0 1 0 1 FLNC chr7:128486799 3'AG 128486799 Downstream 8bp 26647 chr12 7343073 7343073 1 + G A UCEC 7343074 + 7343054 7343094 41 CAAGGCCCTTCGGCAGGAGGGATTGAGGCCTGGCCCCTGGC CAAGGCCCTTCGGCAGGAGAGATTGAGGCCTGGCCCCTGGC < 41bp 0.5389232795248 0.748774383550327 NA NA prediction 0.419702208051054 Functional Gain - PEX5 ENSG00000139197 CDS Human protein_coding chr12:7343074 chr12:7343073 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_29185 0 0 0 0 2 PEX5 chr12:7343120 5'GT 7343120 Upstream 48bp 26648 chr12 7343073 7343073 1 + G A UCEC 7343074 + 7343054 7343094 41 CAAGGCCCTTCGGCAGGAGGGATTGAGGCCTGGCCCCTGGC CAAGGCCCTTCGGCAGGAGAGATTGAGGCCTGGCCCCTGGC < 41bp 0.5389232795248 0.748774383550327 NA NA prediction 0.419702208051054 Functional Gain - PEX5 ENSG00000139197 CDS Human protein_coding chr12:7343074 chr12:7343073 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_29185 0 0 0 0 2 PEX5 chr12:7343165 5'GT 7343165 Upstream 93bp 26649 chr3 50220395 50220395 1 + G A STAD 50220396 + 50220376 50220416 41 AGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCCCGGG AGCACATTCCTGAAGGCGCAGCTCGTCTGCTCTGTCCCGGG < 41bp 0.553027261934112 0.762877243668436 NA NA prediction 0.419699963468648 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220396 chr3:50220395 nonsynonymous SNV 0.320 4 20 hm7G_associated_SNPs_29186 0 0 0 0 2 SEMA3F chr3:50220337 3'AG 50220337 Downstream 59bp 26650 chr3 50220395 50220395 1 + G A STAD 50220396 + 50220376 50220416 41 AGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCCCGGG AGCACATTCCTGAAGGCGCAGCTCGTCTGCTCTGTCCCGGG < 41bp 0.553027261934112 0.762877243668436 NA NA prediction 0.419699963468648 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220396 chr3:50220395 nonsynonymous SNV 0.320 4 20 hm7G_associated_SNPs_29186 0 0 0 0 2 SEMA3F chr3:50220451 5'GT 50220451 Upstream 57bp 26651 chr1 162743361 162743361 1 + C T STAD 162743362 + 162743342 162743382 41 GGTGGCTGTGAAAATGCTCCGAGCAGATGCCAACAAGAATG GGTGGCTGTGAAAATGCTCTGAGCAGATGCCAACAAGAATG < 41bp 0.501274324942317 0.711120594381102 NA NA prediction 0.41969253887757 Functional Gain - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162743362 chr1:162743361 stopgain 1.000 1 20 hm7G_associated_SNPs_29188 0 0 0 0 1 DDR2 chr1:162743386 5'GT 162743386 Upstream 26bp 26652 chr6 39856480 39856480 1 + C T STAD 39856481 + 39856461 39856501 41 GCTTTCTAACGAGGAGATCCGGCAGGCCATCTTGAAGATGG GCTTTCTAACGAGGAGATCTGGCAGGCCATCTTGAAGATGG < 41bp 0.518802271969637 0.728646915572781 NA NA prediction 0.419689287206288 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39856481 chr6:39856480 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29190 0 0 1 0 2 DAAM2 chr6:39856455 3'AG 39856455 Downstream 26bp 26653 chr6 39856480 39856480 1 + C T STAD 39856481 + 39856461 39856501 41 GCTTTCTAACGAGGAGATCCGGCAGGCCATCTTGAAGATGG GCTTTCTAACGAGGAGATCTGGCAGGCCATCTTGAAGATGG < 41bp 0.518802271969637 0.728646915572781 NA NA prediction 0.419689287206288 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39856481 chr6:39856480 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29190 0 0 1 0 2 DAAM2 chr6:39856539 5'GT 39856539 Upstream 60bp 26654 chr17 21207797 21207797 1 + G T BLCA 21207798 + 21207778 21207818 41 TGTGAAGATGTGTGACTTTGGCATCAGTGGCTACTTGGTGG TGTGAAGATGTGTGACTTTTGCATCAGTGGCTACTTGGTGG < 41bp 0.701186030692673 0.911029773245631 NA NA prediction 0.419687485105915 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21207798 chr17:21207797 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_29191 0 0 1 0 2 MAP2K3 chr17:21207738 3'AG 21207738 Downstream 60bp 26655 chr17 21207797 21207797 1 + G T BLCA 21207798 + 21207778 21207818 41 TGTGAAGATGTGTGACTTTGGCATCAGTGGCTACTTGGTGG TGTGAAGATGTGTGACTTTTGCATCAGTGGCTACTTGGTGG < 41bp 0.701186030692673 0.911029773245631 NA NA prediction 0.419687485105915 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21207798 chr17:21207797 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_29191 0 0 1 0 2 MAP2K3 chr17:21207865 5'GT 21207865 Upstream 69bp 26656 chr22 37692055 37692055 1 + G A LUSC 37692056 + 37692036 37692076 41 ACAGCCGGATGGCCCAGAAGGAGAAGGAGCTGTGTATTGGG ACAGCCGGATGGCCCAGAAAGAGAAGGAGCTGTGTATTGGG < 41bp 0.5222457490371 0.732087671520128 NA NA prediction 0.419683844966055 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37692056 chr22:37692055 synonymous SNV . 0 20 hm7G_associated_SNPs_29192 0 0 0 0 2 CYTH4 chr22:37692040 3'AG 37692040 Downstream 16bp 26657 chr22 37692055 37692055 1 + G A LUSC 37692056 + 37692036 37692076 41 ACAGCCGGATGGCCCAGAAGGAGAAGGAGCTGTGTATTGGG ACAGCCGGATGGCCCAGAAAGAGAAGGAGCTGTGTATTGGG < 41bp 0.5222457490371 0.732087671520128 NA NA prediction 0.419683844966055 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37692056 chr22:37692055 synonymous SNV . 0 20 hm7G_associated_SNPs_29192 0 0 0 0 2 CYTH4 chr22:37692106 5'GT 37692106 Upstream 52bp 26658 chr1 32542858 32542858 1 + C T UCEC 32542859 + 32542839 32542879 41 AACAGGCTGGAGTCTGTGCCGATCCCTCATCCACCTCTTCA AACAGGCTGGAGTCTGTGCTGATCCCTCATCCACCTCTTCA < 41bp 0.528377195195104 0.738217717117412 NA NA prediction 0.419681043844615 Functional Gain - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32542859 chr1:32542858 stopgain 0.999 1 20 hm7G_associated_SNPs_29193 0 0 0 0 2 TMEM39B chr1:32542765 3'AG 32542765 Downstream 94bp 26659 chr1 32542858 32542858 1 + C T UCEC 32542859 + 32542839 32542879 41 AACAGGCTGGAGTCTGTGCCGATCCCTCATCCACCTCTTCA AACAGGCTGGAGTCTGTGCTGATCCCTCATCCACCTCTTCA < 41bp 0.528377195195104 0.738217717117412 NA NA prediction 0.419681043844615 Functional Gain - TMEM39B ENSG00000121775 CDS Human protein_coding chr1:32542859 chr1:32542858 stopgain 0.999 1 20 hm7G_associated_SNPs_29193 0 0 0 0 2 TMEM39B chr1:32542919 5'GT 32542919 Upstream 62bp 26660 chr11 66241325 66241325 1 + C T UCEC 66241326 + 66241306 66241346 41 CTCAGCCCCGGGTGTCTGGCGGGAGATCTCGGTCTGTGGGA CTCAGCCCCGGGTGTCTGGTGGGAGATCTCGGTCTGTGGGA < 41bp 0.508061031669363 0.71790138785659 NA NA prediction 0.419680712374453 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66241326 chr11:66241325 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_29194 0 0 1 0 1 PELI3 chr11:66241396 5'GT 66241396 Upstream 72bp 26661 chr5 175763811 175763811 1 + C T rs568407706 175763812 + 175763792 175763832 41 CAGCTGTGAGACACCCACCCGCCTGCCTCTGTCTCTGGCCC CAGCTGTGAGACACCCACCTGCCTGCCTCTGTCTCTGGCCC < 41bp 0.491164330122704 0.709835988692345 NA NA prediction 0.41967197738469 Functional Gain - SIMC1 ENSG00000170085 CDS Human protein_coding chr5:175763812 chr5:175763811 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_29197 0 0 0 0 2 SIMC1 chr5:175763723 3'AG 175763723 Downstream 89bp 26662 chr5 175763811 175763811 1 + C T rs568407706 175763812 + 175763792 175763832 41 CAGCTGTGAGACACCCACCCGCCTGCCTCTGTCTCTGGCCC CAGCTGTGAGACACCCACCTGCCTGCCTCTGTCTCTGGCCC < 41bp 0.491164330122704 0.709835988692345 NA NA prediction 0.41967197738469 Functional Gain - SIMC1 ENSG00000170085 CDS Human protein_coding chr5:175763812 chr5:175763811 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_29197 0 0 0 0 2 SIMC1 chr5:175763879 5'GT 175763879 Upstream 69bp 26663 chr20 62187062 62187062 1 + G A BLCA 62187063 + 62187043 62187083 41 CCTGGACAAGATGAAGCTGGGCAATCCCCAGTCCTTCCTGG CCTGGACAAGATGAAGCTGAGCAATCCCCAGTCCTTCCTGG < 41bp 0.558367247337569 0.768202517119057 NA NA prediction 0.419670539562975 Functional Gain - FNDC11 ENSG00000125531 CDS Human protein_coding chr20:62187063 chr20:62187062 nonsynonymous SNV 0.240 0 20 hm7G_associated_SNPs_29199 0 0 0 0 1 FNDC11 chr20:62187007 3'AG 62187007 Downstream 56bp 26664 chr15 67893070 67893070 1 + C T UCEC 67893071 + 67893051 67893091 41 ACACTCTTGGTCATGGCAACGGAGGCACAGTCTACAAGTGA ACACTCTTGGTCATGGCAATGGAGGCACAGTCTACAAGTGA < 41bp 0.497906315195884 0.709835253599964 NA NA prediction 0.419670507199928 Functional Gain - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67893071 chr15:67893070 synonymous SNV . 0 20 hm7G_associated_SNPs_29200 0 0 1 0 2 MAP2K5 chr15:67893023 3'AG 67893023 Downstream 48bp 26665 chr15 67893070 67893070 1 + C T UCEC 67893071 + 67893051 67893091 41 ACACTCTTGGTCATGGCAACGGAGGCACAGTCTACAAGTGA ACACTCTTGGTCATGGCAATGGAGGCACAGTCTACAAGTGA < 41bp 0.497906315195884 0.709835253599964 NA NA prediction 0.419670507199928 Functional Gain - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67893071 chr15:67893070 synonymous SNV . 0 20 hm7G_associated_SNPs_29200 0 0 1 0 2 MAP2K5 chr15:67893087 5'GT 67893087 Upstream 18bp 26666 chr1 205031678 205031678 1 + C T UCEC 205031679 + 205031659 205031699 41 ACGGTACCATCTACGCCAGCGCCGAGCTAGCCGTGCAAGGT ACGGTACCATCTACGCCAGTGCCGAGCTAGCCGTGCAAGGT < 41bp 0.495709737471396 0.709833187378634 NA NA prediction 0.419666374757269 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031679 chr1:205031678 synonymous SNV . 0 20 hm7G_associated_SNPs_29202 0 0 0 0 1 CNTN2 chr1:205031697 5'GT 205031697 Upstream 20bp 26667 chr2 73450605 73450605 1 + G T UCEC 73450606 + 73450586 73450626 41 CTCTGGAGTTGAAGCCTCAGGACCGTGAGCAGCTTGACGCC CTCTGGAGTTGAAGCCTCATGACCGTGAGCAGCTTGACGCC < 41bp 0.701820686811962 0.911652945259909 NA NA prediction 0.419664516895895 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73450606 chr2:73450605 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_29203 0 0 1 3 2 SMYD5 chr2:73450554 3'AG 73450554 Downstream 52bp 26668 chr2 73450605 73450605 1 + G T UCEC 73450606 + 73450586 73450626 41 CTCTGGAGTTGAAGCCTCAGGACCGTGAGCAGCTTGACGCC CTCTGGAGTTGAAGCCTCATGACCGTGAGCAGCTTGACGCC < 41bp 0.701820686811962 0.911652945259909 NA NA prediction 0.419664516895895 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73450606 chr2:73450605 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_29203 0 0 1 3 2 SMYD5 chr2:73450660 5'GT 73450660 Upstream 56bp 26669 chr20 44463619 44463619 1 + G A STAD 44463620 + 44463600 44463640 41 CGGAGCCCCCCACCTGATGGGCAGTGGGGCAGTCAGCTCCT CGGAGCCCCCCACCTGATGAGCAGTGGGGCAGTCAGCTCCT < 41bp 0.519534590295251 0.729363877489471 NA NA prediction 0.41965857438844 Functional Gain - SNX21 ENSG00000124104 CDS Human protein_coding chr20:44463620 chr20:44463619 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_29206 0 0 1 0 1 SNX21 chr20:44463598 3'AG 44463598 Downstream 22bp 26670 chr15 39886363 39886363 1 + C T CESC 39886364 + 39886344 39886384 41 TTTCACCGCCTACAGATGGCGTCTCAGCCACAGGCCAAAGA TTTCACCGCCTACAGATGGTGTCTCAGCCACAGGCCAAAGA < 41bp 0.500791447924233 0.710617715289944 NA NA prediction 0.419652534731422 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39886364 chr15:39886363 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29207 0 0 1 0 2 THBS1 chr15:39886300 3'AG 39886300 Downstream 64bp 26671 chr15 39886363 39886363 1 + C T CESC 39886364 + 39886344 39886384 41 TTTCACCGCCTACAGATGGCGTCTCAGCCACAGGCCAAAGA TTTCACCGCCTACAGATGGTGTCTCAGCCACAGGCCAAAGA < 41bp 0.500791447924233 0.710617715289944 NA NA prediction 0.419652534731422 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39886364 chr15:39886363 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29207 0 0 1 0 2 THBS1 chr15:39886397 5'GT 39886397 Upstream 35bp 26672 chr15 90128966 90128966 1 + C T rs11629584 90128967 + 90128947 90128987 41 TGTGGACCCTGGTGAAGGCCGGCCCCCCATCACTGGAGTTA TGTGGACCCTGGTGAAGGCTGGCCCCCCATCACTGGAGTTA < 41bp 0.521443768436266 0.731268363134144 NA NA prediction 0.419649189395755 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90128967 chr15:90128966 nonsynonymous SNV 0.985 0 20 hm7G_associated_SNPs_29208 0 0 1 0 1 TICRR chr15:90128939 3'AG 90128939 Downstream 28bp 26673 chr14 65392786 65392786 1 + G T LUAD 65392787 + 65392767 65392807 41 AGTATACATTCAGTATCATGGATGAATTTCAGGTAAATATA AGTATACATTCAGTATCATTGATGAATTTCAGGTAAATATA < 41bp 0.381391859626112 0.709822870219225 NA NA prediction 0.419645740438449 Functional Gain - CHURC1;CHURC1-FNTB ENSG00000125954;ENSG00000257365;ENSG00000258289 CDS Human other chr14:65392787 chr14:65392786 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29209 0 0 1 0 3 CHURC1 chr14:65392725 3'AG 65392725 Downstream 62bp 26674 chr14 65392786 65392786 1 + G T LUAD 65392787 + 65392767 65392807 41 AGTATACATTCAGTATCATGGATGAATTTCAGGTAAATATA AGTATACATTCAGTATCATTGATGAATTTCAGGTAAATATA < 41bp 0.381391859626112 0.709822870219225 NA NA prediction 0.419645740438449 Functional Gain - CHURC1;CHURC1-FNTB ENSG00000125954;ENSG00000257365;ENSG00000258289 CDS Human other chr14:65392787 chr14:65392786 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29209 0 0 1 0 3 CHURC1;CHURC1-FNTB chr14:65392728 3'AG 65392728 Downstream 59bp 26675 chr14 65392786 65392786 1 + G T LUAD 65392787 + 65392767 65392807 41 AGTATACATTCAGTATCATGGATGAATTTCAGGTAAATATA AGTATACATTCAGTATCATTGATGAATTTCAGGTAAATATA < 41bp 0.381391859626112 0.709822870219225 NA NA prediction 0.419645740438449 Functional Gain - CHURC1;CHURC1-FNTB ENSG00000125954;ENSG00000257365;ENSG00000258289 CDS Human other chr14:65392787 chr14:65392786 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29209 0 0 1 0 3 CHURC1;CHURC1-FNTB chr14:65392798 5'GT 65392798 Upstream 13bp 26676 chr15 91453860 91453860 1 + C T rs139860103 91453861 + 91453841 91453881 41 TGGGGCTCTTCCAGCATCACGATGCCATCACTGGCACGGCC TGGGGCTCTTCCAGCATCATGATGCCATCACTGGCACGGCC < 41bp 0.493180548849531 0.709821513689897 NA NA prediction 0.419643027379794 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91453861 chr15:91453860 synonymous SNV . 0 20 hm7G_associated_SNPs_29210 0 0 1 0 1 MAN2A2 chr15:91453913 5'GT 91453913 Upstream 54bp 26677 chr19 3743948 3743948 1 + C T rs150181963 3743949 + 3743929 3743969 41 CCCCTCAGCCAGTTTCAAGCGCCCGGTAGTGATCCTGGGAC CCCCTCAGCCAGTTTCAAGTGCCCGGTAGTGATCCTGGGAC < 41bp 0.50528514160013 0.71510630657528 NA NA prediction 0.419642329950299 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3743949 chr19:3743948 nonsynonymous SNV 0.947 4 20 hm7G_associated_SNPs_29211 0 0 0 0 2 TJP3 chr19:3743937 3'AG 3743937 Downstream 12bp 26678 chr19 3743948 3743948 1 + C T rs150181963 3743949 + 3743929 3743969 41 CCCCTCAGCCAGTTTCAAGCGCCCGGTAGTGATCCTGGGAC CCCCTCAGCCAGTTTCAAGTGCCCGGTAGTGATCCTGGGAC < 41bp 0.50528514160013 0.71510630657528 NA NA prediction 0.419642329950299 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3743949 chr19:3743948 nonsynonymous SNV 0.947 4 20 hm7G_associated_SNPs_29211 0 0 0 0 2 TJP3 chr19:3744032 5'GT 3744032 Upstream 85bp 26679 chr19 18976946 18976946 1 + G A UCEC 18976947 + 18976927 18976967 41 GCGGGCTTACCAGCATGGCGGGGTGACGGGGCTGTCCCAGT GCGGGCTTACCAGCATGGCAGGGTGACGGGGCTGTCCCAGT < 41bp 0.520183801330659 0.730004368970585 NA NA prediction 0.419641135279852 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18976947 chr19:18976946 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_29213 0 0 1 0 1 UPF1 chr19:18976853 3'AG 18976853 Downstream 94bp 26680 chr2 74685732 74685732 1 + G A TGCT 74685733 + 74685713 74685753 41 GGGCTGTAGGTGGAGGTATGGCTCGGGCCAGCAGCGGGAAC GGGCTGTAGGTGGAGGTATAGCTCGGGCCAGCAGCGGGAAC < 41bp 0.49495299320474 0.709807581177645 NA NA prediction 0.41961516235529 Functional Gain - WBP1 ENSG00000239779 CDS Human protein_coding chr2:74685733 chr2:74685732 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29217 0 0 1 1 1 WBP1 chr2:74685798 5'GT 74685798 Upstream 67bp 26681 chr5 176867988 176867988 1 + G T LUAD 176867989 + 176867969 176868009 41 GCTCAGTTCCCCCAGACCTGGACTGGAAGGGCCAGCCACCT GCTCAGTTCCCCCAGACCTTGACTGGAAGGGCCAGCCACCT < 41bp 0.698509893251802 0.908317240909988 NA NA prediction 0.419614695316374 Functional Gain - GRK6 ENSG00000198055 CDS Human protein_coding chr5:176867989 chr5:176867988 synonymous SNV . 0 20 hm7G_associated_SNPs_29218 0 0 1 0 1 GRK6 chr5:176867920 3'AG 176867920 Downstream 69bp 26682 chr10 70730038 70730038 1 + C T STAD 70730039 + 70730019 70730059 41 ATATAGTGGTCATCAAGGACGCACTATCATCTTTTGTGAAA ATATAGTGGTCATCAAGGATGCACTATCATCTTTTGTGAAA < 41bp 0.509125383185818 0.718932252672504 NA NA prediction 0.419613738973372 Functional Gain - DDX21 ENSG00000165732 CDS Human protein_coding chr10:70730039 chr10:70730038 nonsynonymous SNV 0.942 4 20 hm7G_associated_SNPs_29219 0 0 1 0 2 DDX21 chr10:70729957 3'AG 70729957 Downstream 82bp 26683 chr10 70730038 70730038 1 + C T STAD 70730039 + 70730019 70730059 41 ATATAGTGGTCATCAAGGACGCACTATCATCTTTTGTGAAA ATATAGTGGTCATCAAGGATGCACTATCATCTTTTGTGAAA < 41bp 0.509125383185818 0.718932252672504 NA NA prediction 0.419613738973372 Functional Gain - DDX21 ENSG00000165732 CDS Human protein_coding chr10:70730039 chr10:70730038 nonsynonymous SNV 0.942 4 20 hm7G_associated_SNPs_29219 0 0 1 0 2 DDX21 chr10:70730106 5'GT 70730106 Upstream 69bp 26684 chr18 74622034 74622034 1 + G T LUSC 74622035 + 74622015 74622055 41 CATCCTCAGATGGGTTTGTGGCTCCACAGGACCCTCTGCGA CATCCTCAGATGGGTTTGTTGCTCCACAGGACCCTCTGCGA < 41bp 0.366259183498948 0.709804524010066 NA NA prediction 0.419609048020131 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622035 chr18:74622034 synonymous SNV . 0 20 hm7G_associated_SNPs_29221 0 0 1 0 2 ZNF236 chr18:74622024 3'AG 74622024 Downstream 11bp 26685 chr18 74622034 74622034 1 + G T LUSC 74622035 + 74622015 74622055 41 CATCCTCAGATGGGTTTGTGGCTCCACAGGACCCTCTGCGA CATCCTCAGATGGGTTTGTTGCTCCACAGGACCCTCTGCGA < 41bp 0.366259183498948 0.709804524010066 NA NA prediction 0.419609048020131 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74622035 chr18:74622034 synonymous SNV . 0 20 hm7G_associated_SNPs_29221 0 0 1 0 2 ZNF236 chr18:74622125 5'GT 74622125 Upstream 92bp 26686 chr16 88664598 88664598 1 + G A BLCA 88664599 + 88664579 88664619 41 TCCATAGGGAACTGTACCTGGGGAATGAATTGTAGGTTTAT TCCATAGGGAACTGTACCTAGGGAATGAATTGTAGGTTTAT < 41bp 0.513384202196888 0.723187492031247 NA NA prediction 0.419606579668717 Functional Gain - ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88664599 chr16:88664598 stopgain 1.000 1 20 hm7G_associated_SNPs_29222 0 0 1 0 1 ZC3H18 chr16:88664586 3'AG 88664586 Downstream 13bp 26687 chr19 40718998 40718998 1 + G T LUSC 40718999 + 40718979 40719019 41 GCAGGCTGAAGGGGCTGGGGGAAGGAAGCAAACAGTGGTCA GCAGGCTGAAGGGGCTGGGTGAAGGAAGCAAACAGTGGTCA < 41bp 0.699136006400707 0.908938890962201 NA NA prediction 0.419605769122989 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718999 chr19:40718998 synonymous SNV . 0 20 hm7G_associated_SNPs_29224 0 0 0 0 2 MAP3K10 chr19:40718983 3'AG 40718983 Downstream 16bp 26688 chr19 40718998 40718998 1 + G T LUSC 40718999 + 40718979 40719019 41 GCAGGCTGAAGGGGCTGGGGGAAGGAAGCAAACAGTGGTCA GCAGGCTGAAGGGGCTGGGTGAAGGAAGCAAACAGTGGTCA < 41bp 0.699136006400707 0.908938890962201 NA NA prediction 0.419605769122989 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40718999 chr19:40718998 synonymous SNV . 0 20 hm7G_associated_SNPs_29224 0 0 0 0 2 MAP3K10 chr19:40719095 5'GT 40719095 Upstream 98bp 26689 chr19 50208544 50208544 1 + G A LUSC 50208545 + 50208525 50208565 41 AACACCACGCGGATTCCAGGGGTCCAAAAAGGTGAGACCCT AACACCACGCGGATTCCAGAGGTCCAAAAAGGTGAGACCCT < 41bp 0.521386589326109 0.731188378974521 NA NA prediction 0.419603579296824 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208545 chr19:50208544 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_29225 0 0 0 0 2 CPT1C chr19:50208471 3'AG 50208471 Downstream 74bp 26690 chr19 50208544 50208544 1 + G A LUSC 50208545 + 50208525 50208565 41 AACACCACGCGGATTCCAGGGGTCCAAAAAGGTGAGACCCT AACACCACGCGGATTCCAGAGGTCCAAAAAGGTGAGACCCT < 41bp 0.521386589326109 0.731188378974521 NA NA prediction 0.419603579296824 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208545 chr19:50208544 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_29225 0 0 0 0 2 CPT1C chr19:50208555 5'GT 50208555 Upstream 12bp 26691 chr14 91636380 91636380 1 + C T GBM 91636381 + 91636361 91636401 41 AGTTCTGGAAATACGAGTTCGGTGCCTGCACCGGCAGCCTG AGTTCTGGAAATACGAGTTTGGTGCCTGCACCGGCAGCCTG < 41bp 0.515901614391342 0.725698914327003 NA NA prediction 0.419594599871322 Functional Gain - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91636381 chr14:91636380 synonymous SNV . 0 20 hm7G_associated_SNPs_29227 0 0 1 0 1 C14orf159 chr14:91636347 3'AG 91636347 Downstream 34bp 26692 chr20 37634987 37634987 1 + C T SKCM 37634988 + 37634968 37635008 41 TCGCTCGGGAAAATGTTATCGCCTTTATACAGGTTAGTGTG TCGCTCGGGAAAATGTTATTGCCTTTATACAGGTTAGTGTG < 41bp 0.521092976252011 0.730889665895334 NA NA prediction 0.419593379286645 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37634988 chr20:37634987 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_29228 0 0 1 0 1 DHX35 chr20:37634999 5'GT 37634999 Upstream 13bp 26693 chr2 113950908 113950908 1 + C T COAD 113950909 + 113950889 113950929 41 CCTCTACCAGTTCTCCAGACGCTTCCACCATTGCAATCCGG CCTCTACCAGTTCTCCAGATGCTTCCACCATTGCAATCCGG < 41bp 0.486320796325832 0.709795451961198 NA NA prediction 0.419590903922396 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950909 chr2:113950908 nonsynonymous SNV 0.719 4 20 hm7G_associated_SNPs_29229 0 0 0 0 2 PSD4 chr2:113950835 3'AG 113950835 Downstream 74bp 26694 chr2 113950908 113950908 1 + C T COAD 113950909 + 113950889 113950929 41 CCTCTACCAGTTCTCCAGACGCTTCCACCATTGCAATCCGG CCTCTACCAGTTCTCCAGATGCTTCCACCATTGCAATCCGG < 41bp 0.486320796325832 0.709795451961198 NA NA prediction 0.419590903922396 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950909 chr2:113950908 nonsynonymous SNV 0.719 4 20 hm7G_associated_SNPs_29229 0 0 0 0 2 PSD4 chr2:113950947 5'GT 113950947 Upstream 40bp 26695 chr4 134084408 134084408 1 + C T COAD 134084409 + 134084389 134084429 41 GATGGACTGCTGACTAATACGCGAGCGCCTTACAAACCACC GATGGACTGCTGACTAATATGCGAGCGCCTTACAAACCACC < 41bp 0.512219239062508 0.722014158385076 NA NA prediction 0.419589838645137 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134084409 chr4:134084408 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_29230 0 0 0 0 1 PCDH10 chr4:134084437 5'GT 134084437 Upstream 30bp 26696 chr1 154302929 154302929 1 + C T STAD 154302930 + 154302910 154302950 41 AATGAGAAATTCCAGTATGCGGTAAGCGACTCTAGACCACC AATGAGAAATTCCAGTATGTGGTAAGCGACTCTAGACCACC < 41bp 0.515608312853281 0.725401995734083 NA NA prediction 0.419587365761603 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154302930 chr1:154302929 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_29231 0 0 1 0 2 ATP8B2 chr1:154302872 3'AG 154302872 Downstream 58bp 26697 chr1 154302929 154302929 1 + C T STAD 154302930 + 154302910 154302950 41 AATGAGAAATTCCAGTATGCGGTAAGCGACTCTAGACCACC AATGAGAAATTCCAGTATGTGGTAAGCGACTCTAGACCACC < 41bp 0.515608312853281 0.725401995734083 NA NA prediction 0.419587365761603 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154302930 chr1:154302929 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_29231 0 0 1 0 2 ATP8B2 chr1:154302930 5'GT 154302930 Upstream 2bp 26698 chr11 68206126 68206126 1 + G A PAAD 68206127 + 68206107 68206147 41 CAATTTCATAGCCCCGGGCGGTTCCCAGCATGGCCCCTTCA CAATTTCATAGCCCCGGGCAGTTCCCAGCATGGCCCCTTCA < 41bp 0.52263640152177 0.732429844771759 NA NA prediction 0.419586886499979 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68206127 chr11:68206126 nonsynonymous SNV 0.199 1 20 hm7G_associated_SNPs_29232 0 0 1 0 1 LRP5 chr11:68206150 5'GT 68206150 Upstream 25bp 26699 chr15 42132776 42132776 1 + G A SKCM 42132777 + 42132757 42132797 41 CCCACGGCCTGCAGCCACAGGCTCCAGACACGCACGGTCAA CCCACGGCCTGCAGCCACAAGCTCCAGACACGCACGGTCAA < 41bp 0.502289595916931 0.712077734998319 NA NA prediction 0.419576278162775 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42132777 chr15:42132776 nonsynonymous SNV 0.591 0 20 hm7G_associated_SNPs_29236 0 0 1 0 2 JMJD7-PLA2G4B;PLA2G4B chr15:42132722 3'AG 42132722 Downstream 55bp 26700 chr15 42132776 42132776 1 + G A SKCM 42132777 + 42132757 42132797 41 CCCACGGCCTGCAGCCACAGGCTCCAGACACGCACGGTCAA CCCACGGCCTGCAGCCACAAGCTCCAGACACGCACGGTCAA < 41bp 0.502289595916931 0.712077734998319 NA NA prediction 0.419576278162775 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42132777 chr15:42132776 nonsynonymous SNV 0.591 0 20 hm7G_associated_SNPs_29236 0 0 1 0 2 JMJD7-PLA2G4B;PLA2G4B chr15:42132858 5'GT 42132858 Upstream 83bp 26701 chrX 105876407 105876407 1 + G T LUAD 105876408 + 105876388 105876428 41 CTGGATTCACATTGCTGACGGTACTTCAGAACAACCATTTA CTGGATTCACATTGCTGACTGTACTTCAGAACAACCATTTA < 41bp 0.383194489077509 0.709787115662107 NA NA prediction 0.419574231324214 Functional Gain - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105876408 chrX:105876407 nonsynonymous SNV 0.903 4 20 hm7G_associated_SNPs_29237 0 0 1 0 2 CXorf57 chrX:105876360 3'AG 105876360 Downstream 48bp 26702 chrX 105876407 105876407 1 + G T LUAD 105876408 + 105876388 105876428 41 CTGGATTCACATTGCTGACGGTACTTCAGAACAACCATTTA CTGGATTCACATTGCTGACTGTACTTCAGAACAACCATTTA < 41bp 0.383194489077509 0.709787115662107 NA NA prediction 0.419574231324214 Functional Gain - CXorf57 ENSG00000147231 CDS Human protein_coding chrX:105876408 chrX:105876407 nonsynonymous SNV 0.903 4 20 hm7G_associated_SNPs_29237 0 0 1 0 2 CXorf57 chrX:105876482 5'GT 105876482 Upstream 76bp 26703 chr9 133507634 133507634 1 + G T THYM 133507635 + 133507615 133507655 41 GCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACACAG GCTGGGGCAGCACCTACCATGCGTGGCAGCAGCCCACACAG < 41bp 0.352942569709079 0.70978678658794 NA NA prediction 0.419573573175881 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507635 chr9:133507634 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29238 0 0 1 0 2 FUBP3 chr9:133507589 3'AG 133507589 Downstream 46bp 26704 chr9 133507634 133507634 1 + G T THYM 133507635 + 133507615 133507655 41 GCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACACAG GCTGGGGCAGCACCTACCATGCGTGGCAGCAGCCCACACAG < 41bp 0.352942569709079 0.70978678658794 NA NA prediction 0.419573573175881 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507635 chr9:133507634 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29238 0 0 1 0 2 FUBP3 chr9:133507665 5'GT 133507665 Upstream 32bp 26705 chr15 22955251 22955251 1 + C T GBM 22955252 + 22955232 22955272 41 CTTCGACATAAAAGTACCACGCCGCGCCGTGGGACCCTCCA CTTCGACATAAAAGTACCATGCCGCGCCGTGGGACCCTCCA < 41bp 0.508125585884136 0.717911377940333 NA NA prediction 0.419571584112394 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22955252 chr15:22955251 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29239 0 0 1 0 1 CYFIP1 chr15:22955280 5'GT 22955280 Upstream 30bp 26706 chr2 86709743 86709743 1 + C T COAD 86709744 + 86709724 86709764 41 CTATTGGCTTTGTGATAATCGCTTGCTGTGCTTGCAAGACC CTATTGGCTTTGTGATAATTGCTTGCTGTGCTTGCAAGACC < 41bp 0.493304104193286 0.709780106217441 NA NA prediction 0.419560212434883 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86709744 chr2:86709743 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29241 0 0 1 0 1 KDM3A chr2:86709817 5'GT 86709817 Upstream 75bp 26707 chr6 167709557 167709557 1 + G A BRCA 167709558 + 167709538 167709578 41 CTCCATACTGCTGGGACTCGGGGCCGCCCCGCTGTGGTCTG CTCCATACTGCTGGGACTCAGGGCCGCCCCGCTGTGGTCTG < 41bp 0.518783894696647 0.728560393443889 NA NA prediction 0.419552997494484 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167709558 chr6:167709557 nonsynonymous SNV 0.000 4 20 hm7G_associated_SNPs_29242 0 0 1 0 1 UNC93A chr6:167709520 3'AG 167709520 Downstream 38bp 26708 chr17 73567040 73567040 1 + G A rs111422106 73567041 + 73567021 73567061 41 CCCCTTGCAGGCACAGGAGGGGAGTGCCAAGGCTGAGCGGC CCCCTTGCAGGCACAGGAGAGGAGTGCCAAGGCTGAGCGGC < 41bp 0.566770040341958 0.776546327149588 NA NA prediction 0.419552573615259 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73567041 chr17:73567040 nonsynonymous SNV 0.018 0 20 hm7G_associated_SNPs_29243 0 0 1 0 1 LLGL2 chr17:73567031 3'AG 73567031 Downstream 10bp 26709 chr19 50926222 50926222 1 + C T SKCM 50926223 + 50926203 50926243 41 ACAGCCCTGCAGGGAACCTCGAACTGGCCCCCAGCCTGGAG ACAGCCCTGCAGGGAACCTTGAACTGGCCCCCAGCCTGGAG < 41bp 0.513964556198239 0.7237398391407 NA NA prediction 0.419550565884921 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926223 chr19:50926222 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_29244 0 0 0 0 1 SPIB chr19:50926294 5'GT 50926294 Upstream 73bp 26710 chr17 74075557 74075557 1 + G A SKCM 74075558 + 74075538 74075578 41 ACGTCAACTTGTCCAAGAAGGTTCAGGAAAGCATCCAGATC ACGTCAACTTGTCCAAGAAAGTTCAGGAAAGCATCCAGATC < 41bp 0.522741697512788 0.732515725870546 NA NA prediction 0.419548056715517 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075558 chr17:74075557 synonymous SNV . 0 20 hm7G_associated_SNPs_29245 0 0 0 0 2 ZACN chr17:74075520 3'AG 74075520 Downstream 38bp 26711 chr17 74075557 74075557 1 + G A SKCM 74075558 + 74075538 74075578 41 ACGTCAACTTGTCCAAGAAGGTTCAGGAAAGCATCCAGATC ACGTCAACTTGTCCAAGAAAGTTCAGGAAAGCATCCAGATC < 41bp 0.522741697512788 0.732515725870546 NA NA prediction 0.419548056715517 Functional Gain - ZACN ENSG00000186919 CDS Human protein_coding chr17:74075558 chr17:74075557 synonymous SNV . 0 20 hm7G_associated_SNPs_29245 0 0 0 0 2 ZACN chr17:74075644 5'GT 74075644 Upstream 88bp 26712 chr10 4873009 4873009 1 + G A UCEC 4873010 + 4872990 4873030 41 AAGGAAGGCGCTGTAAGACGGGAGGATCTGTTCATTGCCAC AAGGAAGGCGCTGTAAGACAGGAGGATCTGTTCATTGCCAC < 41bp 0.510347925633625 0.720120288037935 NA NA prediction 0.41954472480862 Functional Gain - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4873010 chr10:4873009 nonsynonymous SNV 0.129 4 20 hm7G_associated_SNPs_29247 0 0 0 1 1 AKR1E2 chr10:4873034 5'GT 4873034 Upstream 26bp 26713 chr19 1074641 1074641 1 + C T LUSC 1074642 + 1074622 1074662 41 CCGCTCCTGTCCATCTACTCGCTGGCCCTGGAGCAGGACCT CCGCTCCTGTCCATCTACTTGCTGGCCCTGGAGCAGGACCT < 41bp 0.514510212483858 0.724282071207251 NA NA prediction 0.419543717446788 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1074642 chr19:1074641 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_29248 0 0 1 0 2 ARHGAP45 chr19:1074613 3'AG 1074613 Downstream 29bp 26714 chr19 1074641 1074641 1 + C T LUSC 1074642 + 1074622 1074662 41 CCGCTCCTGTCCATCTACTCGCTGGCCCTGGAGCAGGACCT CCGCTCCTGTCCATCTACTTGCTGGCCCTGGAGCAGGACCT < 41bp 0.514510212483858 0.724282071207251 NA NA prediction 0.419543717446788 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1074642 chr19:1074641 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_29248 0 0 1 0 2 ARHGAP45 chr19:1074723 5'GT 1074723 Upstream 83bp 26715 chr1 36359342 36359342 1 + C T COAD 36359343 + 36359323 36359363 41 CCACCCGCTGGGGGGTGGGCGCGAGGTCTGGTTCGGCTTTC CCACCCGCTGGGGGGTGGGTGCGAGGTCTGGTTCGGCTTTC < 41bp 0.498084277333382 0.709768647372008 NA NA prediction 0.419537294744015 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36359343 chr1:36359342 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29249 0 0 1 0 2 AGO1 chr1:36359275 3'AG 36359275 Downstream 68bp 26716 chr1 36359342 36359342 1 + C T COAD 36359343 + 36359323 36359363 41 CCACCCGCTGGGGGGTGGGCGCGAGGTCTGGTTCGGCTTTC CCACCCGCTGGGGGGTGGGTGCGAGGTCTGGTTCGGCTTTC < 41bp 0.498084277333382 0.709768647372008 NA NA prediction 0.419537294744015 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36359343 chr1:36359342 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29249 0 0 1 0 2 AGO1 chr1:36359411 5'GT 36359411 Upstream 70bp 26717 chr20 33588192 33588192 1 + G A SKCM 33588193 + 33588173 33588213 41 GGCTCAAGAAGAAGATGGAGGGTGACCTCAACGACCTGGAG GGCTCAAGAAGAAGATGGAAGGTGACCTCAACGACCTGGAG < 41bp 0.505337662506467 0.715105104571778 NA NA prediction 0.419534884130622 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33588193 chr20:33588192 synonymous SNV . 0 20 hm7G_associated_SNPs_29250 0 0 0 0 1 MYH7B chr20:33588096 3'AG 33588096 Downstream 97bp 26718 chrX 2772118 2772118 1 + G A COAD 2772119 + 2772099 2772139 41 TCTGAAGAGACCTGAGCTCGGGCTCACCCTCACCAAGCTTC TCTGAAGAGACCTGAGCTCAGGCTCACCCTCACCAAGCTTC < 41bp 0.487543475866331 0.709761558553917 NA NA prediction 0.419523117107835 Functional Gain - GYG2 ENSG00000056998 CDS Human protein_coding chrX:2772119 chrX:2772118 nonsynonymous SNV 0.661 3 20 hm7G_associated_SNPs_29251 0 0 1 0 1 GYG2 chrX:2772195 5'GT 2772195 Upstream 78bp 26719 chr17 61557832 61557832 1 + C T COAD 61557833 + 61557813 61557853 41 CGTCCGCCGCGCACTGCATCGCCGATACGGAGACAGATACA CGTCCGCCGCGCACTGCATTGCCGATACGGAGACAGATACA < 41bp 0.501515977676338 0.711276603601655 NA NA prediction 0.419521251850633 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61557833 chr17:61557832 nonsynonymous SNV 0.878 3 20 hm7G_associated_SNPs_29252 0 0 0 0 1 ACE chr17:61557889 5'GT 61557889 Upstream 58bp 26720 chr11 118257302 118257302 1 + C T rs35460113 118257303 + 118257283 118257323 41 TCATGTCCAATGAAACAATCGGTACCCTTGCCTTTCTCACA TCATGTCCAATGAAACAATTGGTACCCTTGCCTTTCTCACA < 41bp 0.504603725914853 0.714358967125115 NA NA prediction 0.419510482420524 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118257303 chr11:118257302 synonymous SNV . 0 20 hm7G_associated_SNPs_29254 0 0 1 0 1 UBE4A chr11:118257327 5'GT 118257327 Upstream 26bp 26721 chr3 119336969 119336969 1 + G A SKCM 119336970 + 119336950 119336990 41 TTCCCTGTGCCAGCTACAAGGCCTTCCTTGCTGGACGCTGT TTCCCTGTGCCAGCTACAAAGCCTTCCTTGCTGGACGCTGT < 41bp 0.520865899621082 0.730620616710674 NA NA prediction 0.419509434179184 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119336970 chr3:119336969 synonymous SNV . 0 20 hm7G_associated_SNPs_29255 0 0 0 0 1 PLA1A chr3:119337033 5'GT 119337033 Upstream 65bp 26722 chr21 43645821 43645821 1 + C T CESC 43645822 + 43645802 43645842 41 GAGATGACGGAGCCCAAGTCGGTGTGTGTCTCGGTGGATGA GAGATGACGGAGCCCAAGTTGGTGTGTGTCTCGGTGGATGA < 41bp 0.533600837773382 0.743354187987217 NA NA prediction 0.419506700427669 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43645822 chr21:43645821 nonsynonymous SNV 0.925 1 20 hm7G_associated_SNPs_29256 0 0 1 0 1 ABCG1 chr21:43645781 3'AG 43645781 Downstream 41bp 26723 chr2 220501124 220501124 1 + G T LUSC 220501125 + 220501105 220501145 41 GAGCTCAGCCGCTGCTTGTGGTTGGCTTCTCTGGGCCGCTG GAGCTCAGCCGCTGCTTGTTGTTGGCTTCTCTGGGCCGCTG < 41bp 0.36674008474554 0.70975282420326 NA NA prediction 0.41950564840652 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220501125 chr2:220501124 synonymous SNV . 0 20 hm7G_associated_SNPs_29257 0 0 0 0 1 SLC4A3 chr2:220501172 5'GT 220501172 Upstream 49bp 26724 chr11 65388434 65388434 1 + G A rs139652943 65388435 + 65388415 65388455 41 GGGTGCCCCTGGAGATCCCGGAGGTGAGGAGCAGCCGGGGA GGGTGCCCCTGGAGATCCCAGAGGTGAGGAGCAGCCGGGGA < 41bp 0.503890525936761 0.713643065529893 NA NA prediction 0.419505079186264 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65388435 chr11:65388434 synonymous SNV . 0 20 hm7G_associated_SNPs_29258 0 0 1 0 1 PCNX3 chr11:65388437 5'GT 65388437 Upstream 4bp 26725 chr19 13010343 13010343 1 + G T LUSC 13010344 + 13010324 13010364 41 CGGGAATCCAGGCGTTCACGGCCAGCAAGTGAGCCGCTCCA CGGGAATCCAGGCGTTCACTGCCAGCAAGTGAGCCGCTCCA < 41bp 0.691804606025415 0.901555333580558 NA NA prediction 0.419501455110286 Functional Gain - GCDH ENSG00000105607 CDS Human protein_coding chr19:13010344 chr19:13010343 synonymous SNV . 0 20 hm7G_associated_SNPs_29259 0 0 1 0 1 GCDH chr19:13010282 3'AG 13010282 Downstream 62bp 26726 chr12 113810480 113810480 1 + G A PAAD 113810481 + 113810461 113810501 41 ACATGCACTGGATGAACACGGTGGTGAATTACTGCGGCCCC ACATGCACTGGATGAACACAGTGGTGAATTACTGCGGCCCC < 41bp 0.505024573905163 0.714774258357579 NA NA prediction 0.419499368904833 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113810481 chr12:113810480 synonymous SNV . 0 20 hm7G_associated_SNPs_29261 0 0 0 0 1 PLBD2 chr12:113810454 3'AG 113810454 Downstream 27bp 26727 chr11 61488230 61488230 1 + G A COAD 61488231 + 61488211 61488251 41 CCTGAACCTGGTGGACCACGGCCGCGGCTACCTGGGCATCC CCTGAACCTGGTGGACCACAGCCGCGGCTACCTGGGCATCC < 41bp 0.546591817198893 0.756340829532287 NA NA prediction 0.419498024666787 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488231 chr11:61488230 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29262 0 0 0 0 1 DAGLA chr11:61488151 3'AG 61488151 Downstream 80bp 26728 chr11 71943988 71943988 1 + C T STAD 71943989 + 71943969 71944009 41 GGACCAGCTCAACCTGGAGCGGGAGAAGCACAAGGTCTTCC GGACCAGCTCAACCTGGAGTGGGAGAAGCACAAGGTCTTCC < 41bp 0.494496141822794 0.709748546420744 NA NA prediction 0.419497092841487 Functional Gain - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71943989 chr11:71943988 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_29264 0 0 1 0 2 INPPL1 chr11:71943919 3'AG 71943919 Downstream 70bp 26729 chr11 71943988 71943988 1 + C T STAD 71943989 + 71943969 71944009 41 GGACCAGCTCAACCTGGAGCGGGAGAAGCACAAGGTCTTCC GGACCAGCTCAACCTGGAGTGGGAGAAGCACAAGGTCTTCC < 41bp 0.494496141822794 0.709748546420744 NA NA prediction 0.419497092841487 Functional Gain - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71943989 chr11:71943988 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_29264 0 0 1 0 2 INPPL1 chr11:71944018 5'GT 71944018 Upstream 31bp 26730 chr5 137767186 137767186 1 + C T SKCM 137767187 + 137767167 137767207 41 ACATGTAAAGCACTGTTTCCGCCTGACTCAGGAATTCAGGC ACATGTAAAGCACTGTTTCTGCCTGACTCAGGAATTCAGGC < 41bp 0.500553310723237 0.71030155316638 NA NA prediction 0.419496484886286 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137767187 chr5:137767186 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29265 0 0 1 0 2 KDM3B chr5:137767114 3'AG 137767114 Downstream 73bp 26731 chr5 137767186 137767186 1 + C T SKCM 137767187 + 137767167 137767207 41 ACATGTAAAGCACTGTTTCCGCCTGACTCAGGAATTCAGGC ACATGTAAAGCACTGTTTCTGCCTGACTCAGGAATTCAGGC < 41bp 0.500553310723237 0.71030155316638 NA NA prediction 0.419496484886286 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137767187 chr5:137767186 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29265 0 0 1 0 2 KDM3B chr5:137767248 5'GT 137767248 Upstream 63bp 26732 chr10 7777019 7777019 1 + C T UCEC 7777020 + 7777000 7777040 41 GGGGATGAGCGCATGCTGGCGGATGCCCCACCGCAGGATCC GGGGATGAGCGCATGCTGGTGGATGCCCCACCGCAGGATCC < 41bp 0.531483996354187 0.741231152323733 NA NA prediction 0.419494311939092 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7777020 chr10:7777019 nonsynonymous SNV 0.591 3 20 hm7G_associated_SNPs_29266 0 0 1 0 1 ITIH2 chr10:7777054 5'GT 7777054 Upstream 36bp 26733 chr9 96408011 96408011 1 + G A UCEC 96408012 + 96407992 96408032 41 CCTCGTCCCTAAGAAAGACGGGCTGGGTCTGGCTGTCCCGG CCTCGTCCCTAAGAAAGACAGGCTGGGTCTGGCTGTCCCGG < 41bp 0.564937234509732 0.774682652956092 NA NA prediction 0.419490836892719 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96408012 chr9:96408011 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_29268 0 0 1 0 1 PHF2 chr9:96408071 5'GT 96408071 Upstream 61bp 26734 chrX 151820165 151820165 1 + C T STAD 151820166 + 151820146 151820186 41 CTACAGTCGAGGACCTCGGCGCCAGCCTAGGCGACACAGGA CTACAGTCGAGGACCTCGGTGCCAGCCTAGGCGACACAGGA < 41bp 0.508547006988574 0.718290524530004 NA NA prediction 0.41948703508286 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151820166 chrX:151820165 nonsynonymous SNV 0.025 1 20 hm7G_associated_SNPs_29270 0 0 0 0 1 GABRQ chrX:151820245 5'GT 151820245 Upstream 81bp 26735 chr5 115351418 115351418 1 + C T COAD 115351419 + 115351399 115351439 41 CTGAAGTTGGCCGGTATGTCGCAAAAGACTTCTTAGTCAAC CTGAAGTTGGCCGGTATGTTGCAAAAGACTTCTTAGTCAAC < 41bp 0.501508204651927 0.711250644416407 NA NA prediction 0.41948487952896 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115351419 chr5:115351418 synonymous SNV . 0 20 hm7G_associated_SNPs_29271 0 0 0 1 2 LVRN chr5:115351325 3'AG 115351325 Downstream 94bp 26736 chr5 115351418 115351418 1 + C T COAD 115351419 + 115351399 115351439 41 CTGAAGTTGGCCGGTATGTCGCAAAAGACTTCTTAGTCAAC CTGAAGTTGGCCGGTATGTTGCAAAAGACTTCTTAGTCAAC < 41bp 0.501508204651927 0.711250644416407 NA NA prediction 0.41948487952896 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115351419 chr5:115351418 synonymous SNV . 0 20 hm7G_associated_SNPs_29271 0 0 0 1 2 LVRN chr5:115351462 5'GT 115351462 Upstream 45bp 26737 chr10 86008723 86008723 1 + G A SKCM 86008724 + 86008704 86008744 41 GCCAGGCTCACGGCTTCCAGGGCTTTGTGACAGCGTTGGCC GCCAGGCTCACGGCTTCCAAGGCTTTGTGACAGCGTTGGCC < 41bp 0.584983028450443 0.794725020712544 NA NA prediction 0.419483984524203 Functional Gain - RGR ENSG00000148604 CDS Human protein_coding chr10:86008724 chr10:86008723 nonsynonymous SNV 0.906 1 20 hm7G_associated_SNPs_29272 0 0 0 0 2 RGR chr10:86008678 3'AG 86008678 Downstream 46bp 26738 chr10 86008723 86008723 1 + G A SKCM 86008724 + 86008704 86008744 41 GCCAGGCTCACGGCTTCCAGGGCTTTGTGACAGCGTTGGCC GCCAGGCTCACGGCTTCCAAGGCTTTGTGACAGCGTTGGCC < 41bp 0.584983028450443 0.794725020712544 NA NA prediction 0.419483984524203 Functional Gain - RGR ENSG00000148604 CDS Human protein_coding chr10:86008724 chr10:86008723 nonsynonymous SNV 0.906 1 20 hm7G_associated_SNPs_29272 0 0 0 0 2 RGR chr10:86008799 5'GT 86008799 Upstream 77bp 26739 chr16 19613023 19613023 1 + G T KIRC 19613024 + 19613004 19613044 41 GCATCTTTTCCATGTGTGTGGATAGCCGCAGCGTCTTACCA GCATCTTTTCCATGTGTGTTGATAGCCGCAGCGTCTTACCA < 41bp 0.35501616558736 0.709741180481849 NA NA prediction 0.419482360963698 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19613024 chr16:19613023 synonymous SNV . 0 20 hm7G_associated_SNPs_29273 0 0 0 0 2 C16orf62 chr16:19612986 3'AG 19612986 Downstream 38bp 26740 chr16 19613023 19613023 1 + G T KIRC 19613024 + 19613004 19613044 41 GCATCTTTTCCATGTGTGTGGATAGCCGCAGCGTCTTACCA GCATCTTTTCCATGTGTGTTGATAGCCGCAGCGTCTTACCA < 41bp 0.35501616558736 0.709741180481849 NA NA prediction 0.419482360963698 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19613024 chr16:19613023 synonymous SNV . 0 20 hm7G_associated_SNPs_29273 0 0 0 0 2 C16orf62 chr16:19613045 5'GT 19613045 Upstream 23bp 26741 chr10 60560022 60560022 1 + C T UCEC 60560023 + 60560003 60560043 41 AAGTGCTGAGTGCAAATCACGGGGATCCGTCCATCCAGACA AAGTGCTGAGTGCAAATCATGGGGATCCGTCCATCCAGACA < 41bp 0.499062790746134 0.709740880709995 NA NA prediction 0.41948176141999 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560023 chr10:60560022 synonymous SNV . 0 20 hm7G_associated_SNPs_29274 0 0 1 0 2 BICC1 chr10:60559954 3'AG 60559954 Downstream 69bp 26742 chr10 60560022 60560022 1 + C T UCEC 60560023 + 60560003 60560043 41 AAGTGCTGAGTGCAAATCACGGGGATCCGTCCATCCAGACA AAGTGCTGAGTGCAAATCATGGGGATCCGTCCATCCAGACA < 41bp 0.499062790746134 0.709740880709995 NA NA prediction 0.41948176141999 Functional Gain - BICC1 ENSG00000122870 CDS Human protein_coding chr10:60560023 chr10:60560022 synonymous SNV . 0 20 hm7G_associated_SNPs_29274 0 0 1 0 2 BICC1 chr10:60560086 5'GT 60560086 Upstream 65bp 26743 chr8 23198555 23198555 1 - G A UCEC 23198554 - 23198534 23198574 41 AGAATTCCCGCGTGGTCTGCGGCATGTTTGGCTTCCCTGGG AGAATTCCCGCGTGGTCTGTGGCATGTTTGGCTTCCCTGGG < 41bp 0.519835678482233 0.729573758973223 NA NA prediction 0.41947616098198 Functional Gain - LOXL2 ENSG00000134013 CDS Human protein_coding chr8:23198554 chr8:23198555 synonymous SNV . 0 20 hm7G_associated_SNPs_29275 0 0 0 0 1 LOXL2 chr8:23198505 5'GT 23198505 Upstream 51bp 26744 chr1 15808767 15808767 1 + G A rs3820071 15808768 + 15808748 15808788 41 CCTTTCTCCCAGCTCCTCCGGGATCTACCGCGTGATGCTGG CCTTTCTCCCAGCTCCTCCAGGATCTACCGCGTGATGCTGG < 41bp 0.541071337127989 0.750804135675561 NA NA prediction 0.419465597095144 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15808768 chr1:15808767 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_29278 0 0 0 0 1 CELA2B chr1:15808760 3'AG 15808760 Downstream 8bp 26745 chr20 44639205 44639205 1 + C T COAD 44639206 + 44639186 44639226 41 GCACTGTGGAGCGCGGTGACGCCGCTCACCTTCACTCGCGT GCACTGTGGAGCGCGGTGATGCCGCTCACCTTCACTCGCGT < 41bp 0.502046870105842 0.711778809263342 NA NA prediction 0.419463878314998 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639206 chr20:44639205 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_29280 0 0 0 0 2 MMP9 chr20:44639122 3'AG 44639122 Downstream 84bp 26746 chr20 44639205 44639205 1 + C T COAD 44639206 + 44639186 44639226 41 GCACTGTGGAGCGCGGTGACGCCGCTCACCTTCACTCGCGT GCACTGTGGAGCGCGGTGATGCCGCTCACCTTCACTCGCGT < 41bp 0.502046870105842 0.711778809263342 NA NA prediction 0.419463878314998 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44639206 chr20:44639205 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_29280 0 0 0 0 2 MMP9 chr20:44639270 5'GT 44639270 Upstream 66bp 26747 chr1 26140576 26140576 1 + G T UCEC 26140577 + 26140557 26140597 41 TGTCCCCACAGAACAACCAGGAGAACTCGTCCCACCAGAAG TGTCCCCACAGAACAACCATGAGAACTCGTCCCACCAGAAG < 41bp 0.360175470957127 0.709730147714018 NA NA prediction 0.419460295428037 Functional Gain - SELENON ENSG00000162430;ENSG00000255054 CDS Human other chr1:26140577 chr1:26140576 nonsynonymous SNV 0.093 1 20 hm7G_associated_SNPs_29282 0 0 1 0 2 SELENON chr1:26140568 3'AG 26140568 Downstream 9bp 26748 chr1 26140576 26140576 1 + G T UCEC 26140577 + 26140557 26140597 41 TGTCCCCACAGAACAACCAGGAGAACTCGTCCCACCAGAAG TGTCCCCACAGAACAACCATGAGAACTCGTCCCACCAGAAG < 41bp 0.360175470957127 0.709730147714018 NA NA prediction 0.419460295428037 Functional Gain - SELENON ENSG00000162430;ENSG00000255054 CDS Human other chr1:26140577 chr1:26140576 nonsynonymous SNV 0.093 1 20 hm7G_associated_SNPs_29282 0 0 1 0 2 SELENON chr1:26140669 5'GT 26140669 Upstream 94bp 26749 chr7 99817650 99817650 1 + G A UCEC 99817651 + 99817631 99817671 41 TGACCTTGTGTGTCACTGCGGGTGAGTGCCGGCACCAGAGA TGACCTTGTGTGTCACTGCAGGTGAGTGCCGGCACCAGAGA < 41bp 0.488173342759926 0.70972801076873 NA NA prediction 0.419456021537461 Functional Gain - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99817651 chr7:99817650 synonymous SNV . 0 20 hm7G_associated_SNPs_29283 0 0 0 0 1 PVRIG chr7:99817651 5'GT 99817651 Upstream 2bp 26750 chr2 209292981 209292981 1 + C T COAD 209292982 + 209292962 209293002 41 ATTGTCCTTGTGCTGAAAGCGAAAGTACAATGTGAACTCAA ATTGTCCTTGTGCTGAAAGTGAAAGTACAATGTGAACTCAA < 41bp 0.498718331464704 0.709725317421243 NA NA prediction 0.419450634842487 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209292982 chr2:209292981 nonsynonymous SNV 0.940 1 20 hm7G_associated_SNPs_29285 0 0 0 0 2 PTH2R chr2:209292926 3'AG 209292926 Downstream 56bp 26751 chr2 209292981 209292981 1 + C T COAD 209292982 + 209292962 209293002 41 ATTGTCCTTGTGCTGAAAGCGAAAGTACAATGTGAACTCAA ATTGTCCTTGTGCTGAAAGTGAAAGTACAATGTGAACTCAA < 41bp 0.498718331464704 0.709725317421243 NA NA prediction 0.419450634842487 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209292982 chr2:209292981 nonsynonymous SNV 0.940 1 20 hm7G_associated_SNPs_29285 0 0 0 0 2 PTH2R chr2:209293028 5'GT 209293028 Upstream 48bp 26752 chr14 96864584 96864584 1 + C T LGG 96864585 + 96864565 96864605 41 AGCCCGCGGCCTGACTTTGCGGTGGAGACGTACTCTGTAAG AGCCCGCGGCCTGACTTTGTGGTGGAGACGTACTCTGTAAG < 41bp 0.513996869466828 0.723721790105273 NA NA prediction 0.419449841276891 Functional Gain - AK7 ENSG00000140057 CDS Human protein_coding chr14:96864585 chr14:96864584 nonsynonymous SNV 0.006 2 20 hm7G_associated_SNPs_29286 0 0 1 0 1 AK7 chr14:96864600 5'GT 96864600 Upstream 17bp 26753 chr8 99044528 99044528 1 + C T rs2255317 99044529 + 99044509 99044549 41 GCAGGGGAACTGCCAAAAACGGTCCAACAGCCAACAGGTAC GCAGGGGAACTGCCAAAAATGGTCCAACAGCCAACAGGTAC < 41bp 0.520288759229697 0.730012931107373 NA NA prediction 0.419448343755352 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99044529 chr8:99044528 nonsynonymous SNV 0.055 0 20 hm7G_associated_SNPs_29288 0 0 0 0 2 MATN2 chr8:99044474 3'AG 99044474 Downstream 55bp 26754 chr8 99044528 99044528 1 + C T rs2255317 99044529 + 99044509 99044549 41 GCAGGGGAACTGCCAAAAACGGTCCAACAGCCAACAGGTAC GCAGGGGAACTGCCAAAAATGGTCCAACAGCCAACAGGTAC < 41bp 0.520288759229697 0.730012931107373 NA NA prediction 0.419448343755352 Functional Gain - MATN2 ENSG00000132561 CDS Human protein_coding chr8:99044529 chr8:99044528 nonsynonymous SNV 0.055 0 20 hm7G_associated_SNPs_29288 0 0 0 0 2 MATN2 chr8:99044545 5'GT 99044545 Upstream 18bp 26755 chr1 11894601 11894601 1 + C T GBM 11894602 + 11894582 11894622 41 TGATATCCACGTGGGCCTGCGAGGCGTGCCGCTTCTGGAAT TGATATCCACGTGGGCCTGTGAGGCGTGCCGCTTCTGGAAT < 41bp 0.493510956288796 0.709723251139714 NA NA prediction 0.419446502279429 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11894602 chr1:11894601 stopgain 0.101 1 20 hm7G_associated_SNPs_29289 0 0 1 0 2 CLCN6 chr1:11894541 3'AG 11894541 Downstream 61bp 26756 chr1 11894601 11894601 1 + C T GBM 11894602 + 11894582 11894622 41 TGATATCCACGTGGGCCTGCGAGGCGTGCCGCTTCTGGAAT TGATATCCACGTGGGCCTGTGAGGCGTGCCGCTTCTGGAAT < 41bp 0.493510956288796 0.709723251139714 NA NA prediction 0.419446502279429 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11894602 chr1:11894601 stopgain 0.101 1 20 hm7G_associated_SNPs_29289 0 0 1 0 2 CLCN6 chr1:11894647 5'GT 11894647 Upstream 47bp 26757 chr19 17450047 17450047 1 + G A READ 17450048 + 17450028 17450068 41 TCACTGGACCCCCCAATGCGGGCAAGAGCAGCCTAGTGAAC TCACTGGACCCCCCAATGCAGGCAAGAGCAGCCTAGTGAAC < 41bp 0.541042215598007 0.750765403474684 NA NA prediction 0.419446375753354 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450048 chr19:17450047 synonymous SNV . 0 20 hm7G_associated_SNPs_29290 0 0 1 0 1 GTPBP3 chr19:17450075 5'GT 17450075 Upstream 29bp 26758 chr15 31217427 31217427 1 + C T COAD 31217428 + 31217408 31217448 41 GTGCGCCTGCGAGAGTCTCCGAGCTGTAAAAAGTTCAAGCA GTGCGCCTGCGAGAGTCTCTGAGCTGTAAAAAGTTCAAGCA < 41bp 0.495919239635488 0.709723031307435 NA NA prediction 0.41944606261487 Functional Gain - FAN1 ENSG00000198690 CDS Human protein_coding chr15:31217428 chr15:31217427 nonsynonymous SNV 0.621 1 20 hm7G_associated_SNPs_29291 0 0 1 0 2 FAN1 chr15:31217330 3'AG 31217330 Downstream 98bp 26759 chr15 31217427 31217427 1 + C T COAD 31217428 + 31217408 31217448 41 GTGCGCCTGCGAGAGTCTCCGAGCTGTAAAAAGTTCAAGCA GTGCGCCTGCGAGAGTCTCTGAGCTGTAAAAAGTTCAAGCA < 41bp 0.495919239635488 0.709723031307435 NA NA prediction 0.41944606261487 Functional Gain - FAN1 ENSG00000198690 CDS Human protein_coding chr15:31217428 chr15:31217427 nonsynonymous SNV 0.621 1 20 hm7G_associated_SNPs_29291 0 0 1 0 2 FAN1 chr15:31217494 5'GT 31217494 Upstream 68bp 26760 chr20 2842328 2842328 1 + G A UCS 2842329 + 2842309 2842349 41 AAGGCGGCTGATGGTGGTGGGCGATGCACCCGAGAGCATCC AAGGCGGCTGATGGTGGTGAGCGATGCACCCGAGAGCATCC < 41bp 0.541802502748441 0.751519863210377 NA NA prediction 0.419434720923871 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2842329 chr20:2842328 nonsynonymous SNV 0.896 3 20 hm7G_associated_SNPs_29294 0 0 1 0 2 VPS16 chr20:2842261 3'AG 2842261 Downstream 68bp 26761 chr20 2842328 2842328 1 + G A UCS 2842329 + 2842309 2842349 41 AAGGCGGCTGATGGTGGTGGGCGATGCACCCGAGAGCATCC AAGGCGGCTGATGGTGGTGAGCGATGCACCCGAGAGCATCC < 41bp 0.541802502748441 0.751519863210377 NA NA prediction 0.419434720923871 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2842329 chr20:2842328 nonsynonymous SNV 0.896 3 20 hm7G_associated_SNPs_29294 0 0 1 0 2 VPS16 chr20:2842350 5'GT 2842350 Upstream 23bp 26762 chr17 6928518 6928518 1 + G A COAD 6928519 + 6928499 6928539 41 AACGGGCTCGTCCACTACCGGGTAAGAGCCCCTCTTTCTTG AACGGGCTCGTCCACTACCAGGTAAGAGCCCCTCTTTCTTG < 41bp 0.501515529318714 0.711232108995433 NA NA prediction 0.419433159353437 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6928519 chr17:6928518 synonymous SNV . 0 20 hm7G_associated_SNPs_29295 0 0 0 0 1 BCL6B chr17:6928519 5'GT 6928519 Upstream 2bp 26763 chr10 72629616 72629616 1 + C T COAD 72629617 + 72629597 72629637 41 CTTTGGGATGAAGATTGTGCGGGTCCCATTGACGAAGATGA CTTTGGGATGAAGATTGTGTGGGTCCCATTGACGAAGATGA < 41bp 0.524400215753258 0.734115804787467 NA NA prediction 0.419431178068417 Functional Gain - SGPL1 ENSG00000166224 CDS Human protein_coding chr10:72629617 chr10:72629616 nonsynonymous SNV 0.859 1 20 hm7G_associated_SNPs_29296 0 0 1 0 1 SGPL1 chr10:72629654 5'GT 72629654 Upstream 39bp 26764 chr11 1908744 1908744 1 + G T MESO 1908745 + 1908725 1908765 41 TATAAGTTTGTGGCCACCGGGCATGGGAAGTATGAGAAGGT TATAAGTTTGTGGCCACCGTGCATGGGAAGTATGAGAAGGT < 41bp 0.694805304329465 0.904513823253147 NA NA prediction 0.419417037847364 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1908745 chr11:1908744 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_29298 0 0 0 0 2 LSP1 chr11:1908704 3'AG 1908704 Downstream 41bp 26765 chr11 1908744 1908744 1 + G T MESO 1908745 + 1908725 1908765 41 TATAAGTTTGTGGCCACCGGGCATGGGAAGTATGAGAAGGT TATAAGTTTGTGGCCACCGTGCATGGGAAGTATGAGAAGGT < 41bp 0.694805304329465 0.904513823253147 NA NA prediction 0.419417037847364 Functional Gain - LSP1 ENSG00000130592 CDS Human protein_coding chr11:1908745 chr11:1908744 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_29298 0 0 0 0 2 LSP1 chr11:1908806 5'GT 1908806 Upstream 63bp 26766 chr9 99227746 99227746 1 + C T COAD 99227747 + 99227727 99227767 41 TTTTGACCAGAGAGGAAAGCGAGAATTTGAAAGATATGGTG TTTTGACCAGAGAGGAAAGTGAGAATTTGAAAGATATGGTG < 41bp 0.503346880293398 0.71305402929288 NA NA prediction 0.419414297998965 Functional Gain - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99227747 chr9:99227746 stopgain 0.990 1 20 hm7G_associated_SNPs_29299 0 0 0 0 1 HABP4 chr9:99227780 5'GT 99227780 Upstream 35bp 26767 chr22 42470284 42470284 1 + G A rs542097696 42470285 + 42470265 42470305 41 GCCACGTTGCAGCCCAGGCGGAGGCGCGGGATCTCGAGCTG GCCACGTTGCAGCCCAGGCAGAGGCGCGGGATCTCGAGCTG < 41bp 0.529196810455712 0.738903523786761 NA NA prediction 0.419413426662098 Functional Gain - FAM109B ENSG00000177096 UTR5 Human protein_coding chr22:42470285 chr22:42470284 . . 0 20 hm7G_associated_SNPs_29300 0 0 0 0 1 FAM109B chr22:42470345 5'GT 42470345 Upstream 62bp 26768 chr1 201860549 201860549 1 + G T UCEC 201860550 + 201860530 201860570 41 CCAGGAGATTCCAATGACAGGCATCCCAGTGCAGCCAGTAT CCAGGAGATTCCAATGACATGCATCCCAGTGCAGCCAGTAT < 41bp 0.6995599631734 0.909265594232816 NA NA prediction 0.419411262118833 Functional Gain - SHISA4 ENSG00000198892 CDS Human protein_coding chr1:201860550 chr1:201860549 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29301 0 0 1 0 1 SHISA4 chr1:201860529 3'AG 201860529 Downstream 21bp 26769 chr6 43406384 43406384 1 + C T STAD 43406385 + 43406365 43406405 41 GCGTGGGCATGTGGCAGTGCGGGGGCTGTCCAAGGGCTTTG GCGTGGGCATGTGGCAGTGTGGGGGCTGTCCAAGGGCTTTG < 41bp 0.528550232166074 0.73825378436521 NA NA prediction 0.419407104398271 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43406385 chr6:43406384 nonsynonymous SNV 0.012 1 20 hm7G_associated_SNPs_29302 0 0 1 0 1 ABCC10 chr6:43406362 3'AG 43406362 Downstream 23bp 26770 chr15 22940817 22940817 1 + C T UCEC 22940818 + 22940798 22940838 41 GACCACATGCGCTTCATTTCGGAGCTGGCGCGCTACAGCAA GACCACATGCGCTTCATTTTGGAGCTGGCGCGCTACAGCAA < 41bp 0.507977483810337 0.717680377190836 NA NA prediction 0.419405786760997 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22940818 chr15:22940817 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29304 0 0 1 0 2 CYFIP1 chr15:22940728 3'AG 22940728 Downstream 90bp 26771 chr15 22940817 22940817 1 + C T UCEC 22940818 + 22940798 22940838 41 GACCACATGCGCTTCATTTCGGAGCTGGCGCGCTACAGCAA GACCACATGCGCTTCATTTTGGAGCTGGCGCGCTACAGCAA < 41bp 0.507977483810337 0.717680377190836 NA NA prediction 0.419405786760997 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22940818 chr15:22940817 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29304 0 0 1 0 2 CYFIP1 chr15:22940845 5'GT 22940845 Upstream 29bp 26772 chr1 3396446 3396446 1 + G A STAD 3396447 + 3396427 3396467 41 AGGTCACACTGCAGCAGGCGGACGTGGTCCTGGTTCTGCAG AGGTCACACTGCAGCAGGCAGACGTGGTCCTGGTTCTGCAG < 41bp 0.512299659969152 0.72200074553561 NA NA prediction 0.419402171132917 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3396447 chr1:3396446 synonymous SNV . 0 20 hm7G_associated_SNPs_29305 0 0 1 0 2 ARHGEF16 chr1:3396376 3'AG 3396376 Downstream 71bp 26773 chr1 3396446 3396446 1 + G A STAD 3396447 + 3396427 3396467 41 AGGTCACACTGCAGCAGGCGGACGTGGTCCTGGTTCTGCAG AGGTCACACTGCAGCAGGCAGACGTGGTCCTGGTTCTGCAG < 41bp 0.512299659969152 0.72200074553561 NA NA prediction 0.419402171132917 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3396447 chr1:3396446 synonymous SNV . 0 20 hm7G_associated_SNPs_29305 0 0 1 0 2 ARHGEF16 chr1:3396477 5'GT 3396477 Upstream 32bp 26774 chr6 149893461 149893461 1 + G T LUSC 149893462 + 149893442 149893482 41 ACTACACTGAAAGATGATGGGGACATATCTAAACAGCAGGT ACTACACTGAAAGATGATGTGGACATATCTAAACAGCAGGT < 41bp 0.686973355014816 0.896673888755696 NA NA prediction 0.419401067481759 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149893462 chr6:149893461 nonsynonymous SNV 0.044 3 20 hm7G_associated_SNPs_29306 0 0 1 0 2 GINM1 chr6:149893421 3'AG 149893421 Downstream 41bp 26775 chr6 149893461 149893461 1 + G T LUSC 149893462 + 149893442 149893482 41 ACTACACTGAAAGATGATGGGGACATATCTAAACAGCAGGT ACTACACTGAAAGATGATGTGGACATATCTAAACAGCAGGT < 41bp 0.686973355014816 0.896673888755696 NA NA prediction 0.419401067481759 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149893462 chr6:149893461 nonsynonymous SNV 0.044 3 20 hm7G_associated_SNPs_29306 0 0 1 0 2 GINM1 chr6:149893480 5'GT 149893480 Upstream 20bp 26776 chr16 50136220 50136220 1 + G T COAD 50136221 + 50136201 50136241 41 CCAAAGATCCTTCCCTTGTGGTAGCAGGAGAAGCTTTGGAT CCAAAGATCCTTCCCTTGTTGTAGCAGGAGAAGCTTTGGAT < 41bp 0.690184631711181 0.899884203349107 NA NA prediction 0.419399143275852 Functional Gain - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50136221 chr16:50136220 synonymous SNV . 0 20 hm7G_associated_SNPs_29307 0 0 0 0 1 HEATR3 chr16:50136170 3'AG 50136170 Downstream 51bp 26777 chr12 58009394 58009394 1 + C T UCEC 58009395 + 58009375 58009415 41 TTCCCGAGGTCGAGAGAGGCGCGTCTTCCTCTTTGAGCAAA TTCCCGAGGTCGAGAGAGGTGCGTCTTCCTCTTTGAGCAAA < 41bp 0.527289047255908 0.736984192420298 NA NA prediction 0.419390290328781 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58009395 chr12:58009394 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_29311 0 0 0 0 1 ARHGEF25 chr12:58009295 3'AG 58009295 Downstream 100bp 26778 chr9 116764283 116764283 1 + C T rs4978561 116764284 + 116764264 116764304 41 TCTGTTTTCCAGGGTCTTACGAATGCGGAATCTGTGGCAAG TCTGTTTTCCAGGGTCTTATGAATGCGGAATCTGTGGCAAG < 41bp 0.530829866043532 0.740523737984154 NA NA prediction 0.419387743881244 Functional Gain - ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116764284 chr9:116764283 synonymous SNV . 0 20 hm7G_associated_SNPs_29312 0 0 0 0 1 ZNF618 chr9:116764353 5'GT 116764353 Upstream 71bp 26779 chr6 151857472 151857472 1 + C T STAD 151857473 + 151857453 151857493 41 GAAACTTACGATCATCTTTCGGAAGTCCCGGTCACGCGGGA GAAACTTACGATCATCTTTTGGAAGTCCCGGTCACGCGGGA < 41bp 0.521322958093529 0.731013986445807 NA NA prediction 0.419382056704557 Functional Gain - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151857473 chr6:151857472 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_29313 0 0 0 0 1 CCDC170 chr6:151857453 3'AG 151857453 Downstream 20bp 26780 chr19 50195540 50195540 1 + C T COAD 50195541 + 50195521 50195561 41 GCACCAGGCCGTGGGCTTCCGACCCTCGCTGACCTCGGACG GCACCAGGCCGTGGGCTTCTGACCCTCGCTGACCTCGGACG < 41bp 0.507944525889191 0.717635208356697 NA NA prediction 0.419381364935011 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50195541 chr19:50195540 stopgain 0.333 0 20 hm7G_associated_SNPs_29314 0 0 0 0 1 CPT1C chr19:50195496 3'AG 50195496 Downstream 45bp 26781 chr11 94039693 94039693 1 + G A OV 94039694 + 94039674 94039714 41 TTCAGTGCATCCCCTGGAAGGACAATGCCTGCTGCACCCTC TTCAGTGCATCCCCTGGAAAGACAATGCCTGCTGCACCCTC < 41bp 0.515561005639715 0.72524833851192 NA NA prediction 0.41937466574441 Functional Gain - IZUMO1R ENSG00000183560 CDS Human protein_coding chr11:94039694 chr11:94039693 synonymous SNV . 0 20 hm7G_associated_SNPs_29315 0 0 0 0 1 IZUMO1R chr11:94039679 3'AG 94039679 Downstream 15bp 26782 chr11 75480155 75480155 1 + G A LUSC 75480156 + 75480136 75480176 41 CGCGAGGGGTCTGGGAGATGGGGTGAGTGCCACGGCGCAGG CGCGAGGGGTCTGGGAGATAGGGTGAGTGCCACGGCGCAGG < 41bp 0.551733410692115 0.761420269262733 NA NA prediction 0.419373717141236 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75480156 chr11:75480155 stopgain 0.999 0 20 hm7G_associated_SNPs_29316 0 0 1 0 1 DGAT2 chr11:75480157 5'GT 75480157 Upstream 3bp 26783 chr11 60885699 60885699 1 + G T UCEC 60885700 + 60885680 60885720 41 AGTGCCAGGGCCAGCTGGAGGTCTACCTCAAGGACGGATGG AGTGCCAGGGCCAGCTGGATGTCTACCTCAAGGACGGATGG < 41bp 0.366788894371951 0.709680186284611 NA NA prediction 0.419360372569221 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60885700 chr11:60885699 nonsynonymous SNV 0.824 4 20 hm7G_associated_SNPs_29318 0 0 0 0 1 CD5 chr11:60885647 3'AG 60885647 Downstream 53bp 26784 chr4 25677847 25677847 1 + G A LAML 25677848 + 25677828 25677868 41 GCCCATCCGCATGGCCAAGGGGCTGGGCAACATCTCTGCCA GCCCATCCGCATGGCCAAGAGGCTGGGCAACATCTCTGCCA < 41bp 0.528882180063305 0.738562257579639 NA NA prediction 0.419360155032667 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25677848 chr4:25677847 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_29319 0 0 0 0 1 SLC34A2 chr4:25677757 3'AG 25677757 Downstream 91bp 26785 chr17 48245324 48245324 1 + G A rs145697858 48245325 + 48245305 48245345 41 CAGGTCACAGCCTACAATCGGGACAGCTTTGATACCACTCG CAGGTCACAGCCTACAATCAGGACAGCTTTGATACCACTCG < 41bp 0.544784430077227 0.7544644830477 NA NA prediction 0.419360105940947 Functional Gain - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245325 chr17:48245324 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_29320 0 0 0 4 2 SGCA chr17:48245308 3'AG 48245308 Downstream 17bp 26786 chr17 48245324 48245324 1 + G A rs145697858 48245325 + 48245305 48245345 41 CAGGTCACAGCCTACAATCGGGACAGCTTTGATACCACTCG CAGGTCACAGCCTACAATCAGGACAGCTTTGATACCACTCG < 41bp 0.544784430077227 0.7544644830477 NA NA prediction 0.419360105940947 Functional Gain - SGCA ENSG00000108823 CDS Human protein_coding chr17:48245325 chr17:48245324 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_29320 0 0 0 4 2 SGCA chr17:48245380 5'GT 48245380 Upstream 57bp 26787 chr20 61453507 61453507 1 + C T rs137979802 61453508 + 61453488 61453528 41 CTGGTCCCCCAGGACCTCCCGGACCCCCTGTAAGTACTGGG CTGGTCCCCCAGGACCTCCTGGACCCCCTGTAAGTACTGGG < 41bp 0.505337975789679 0.715017083984592 NA NA prediction 0.419358216389826 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61453508 chr20:61453507 synonymous SNV . 0 20 hm7G_associated_SNPs_29321 2 0 1 0 2 COL9A3 chr20:61453463 3'AG 61453463 Downstream 45bp 26788 chr20 61453507 61453507 1 + C T rs137979802 61453508 + 61453488 61453528 41 CTGGTCCCCCAGGACCTCCCGGACCCCCTGTAAGTACTGGG CTGGTCCCCCAGGACCTCCTGGACCCCCTGTAAGTACTGGG < 41bp 0.505337975789679 0.715017083984592 NA NA prediction 0.419358216389826 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61453508 chr20:61453507 synonymous SNV . 0 20 hm7G_associated_SNPs_29321 2 0 1 0 2 COL9A3 chr20:61453516 5'GT 61453516 Upstream 10bp 26789 chrX 128926336 128926336 1 + G A COAD 128926337 + 128926317 128926357 41 CAGCCCCAGCCCAGGTTCTGGCAGCTTCGGGGAGGAACCAC CAGCCCCAGCCCAGGTTCTAGCAGCTTCGGGGAGGAACCAC < 41bp 0.571807746578579 0.781486355762106 NA NA prediction 0.419357218367053 Functional Gain - SASH3 ENSG00000122122 CDS Human protein_coding chrX:128926337 chrX:128926336 nonsynonymous SNV 0.681 0 20 hm7G_associated_SNPs_29322 0 0 0 0 1 SASH3 chrX:128926304 3'AG 128926304 Downstream 33bp 26790 chr17 73487500 73487500 1 + C T rs138600560 73487501 + 73487481 73487521 41 GCAGCCATGAGGACCTCACCGATGGCCTATCCACCCGCTCC GCAGCCATGAGGACCTCACTGATGGCCTATCCACCCGCTCC < 41bp 0.504200698963831 0.713874862039656 NA NA prediction 0.419348326151649 Functional Gain - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73487501 chr17:73487500 synonymous SNV . 0 20 hm7G_associated_SNPs_29324 0 0 0 0 2 TMEM94 chr17:73487536 5'GT 73487536 Upstream 37bp 26791 chr17 73487500 73487500 1 + C T rs138600560 73487501 + 73487481 73487521 41 GCAGCCATGAGGACCTCACCGATGGCCTATCCACCCGCTCC GCAGCCATGAGGACCTCACTGATGGCCTATCCACCCGCTCC < 41bp 0.504200698963831 0.713874862039656 NA NA prediction 0.419348326151649 Functional Gain - TMEM94 ENSG00000177728 CDS Human protein_coding chr17:73487501 chr17:73487500 synonymous SNV . 0 20 hm7G_associated_SNPs_29324 0 0 0 0 2 TMEM94 chr17:73487548 5'GT 73487548 Upstream 49bp 26792 chr5 176002409 176002409 1 + G T TGCT 176002410 + 176002390 176002430 41 AGTTTTACTCGGCCTCTGTGGCTGAGGATGCAGCCAAGGTG AGTTTTACTCGGCCTCTGTTGCTGAGGATGCAGCCAAGGTG < 41bp 0.363689136142153 0.709669543010471 NA NA prediction 0.419339086020943 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176002410 chr5:176002409 synonymous SNV . 0 20 hm7G_associated_SNPs_29325 0 0 1 0 1 CDHR2 chr5:176002427 5'GT 176002427 Upstream 19bp 26793 chr15 90159667 90159667 1 + C T STAD 90159668 + 90159648 90159688 41 TGCTGACTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAG TGCTGACTAAGAGTGTGGCTGAGACTCCAGTGCATAAGCAG < 41bp 0.521116393473383 0.730785247328595 NA NA prediction 0.419337707710424 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90159668 chr15:90159667 synonymous SNV . 0 20 hm7G_associated_SNPs_29326 0 0 1 0 2 TICRR chr15:90159636 3'AG 90159636 Downstream 32bp 26794 chr15 90159667 90159667 1 + C T STAD 90159668 + 90159648 90159688 41 TGCTGACTAAGAGTGTGGCCGAGACTCCAGTGCATAAGCAG TGCTGACTAAGAGTGTGGCTGAGACTCCAGTGCATAAGCAG < 41bp 0.521116393473383 0.730785247328595 NA NA prediction 0.419337707710424 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90159668 chr15:90159667 synonymous SNV . 0 20 hm7G_associated_SNPs_29326 0 0 1 0 2 TICRR chr15:90159726 5'GT 90159726 Upstream 60bp 26795 chr1 65849975 65849975 1 + C T COAD 65849976 + 65849956 65849996 41 TCGATTGCTATATGCAAAGCGACCAGGAATTGGACTTTCAC TCGATTGCTATATGCAAAGTGACCAGGAATTGGACTTTCAC < 41bp 0.507338658776494 0.71700592881903 NA NA prediction 0.419334540085071 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65849976 chr1:65849975 stopgain 1.000 1 20 hm7G_associated_SNPs_29327 0 0 1 0 2 DNAJC6 chr1:65849876 3'AG 65849876 Downstream 100bp 26796 chr1 65849975 65849975 1 + C T COAD 65849976 + 65849956 65849996 41 TCGATTGCTATATGCAAAGCGACCAGGAATTGGACTTTCAC TCGATTGCTATATGCAAAGTGACCAGGAATTGGACTTTCAC < 41bp 0.507338658776494 0.71700592881903 NA NA prediction 0.419334540085071 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65849976 chr1:65849975 stopgain 1.000 1 20 hm7G_associated_SNPs_29327 0 0 1 0 2 DNAJC6 chr1:65850009 5'GT 65850009 Upstream 35bp 26797 chr15 22933783 22933783 1 + C T HNSC 22933784 + 22933764 22933804 41 TCGAAGTGATTTCTGGCTACGAAGAGCTCCTGGCAGATATT TCGAAGTGATTTCTGGCTATGAAGAGCTCCTGGCAGATATT < 41bp 0.530848839887963 0.740515455621439 NA NA prediction 0.419333231466952 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22933784 chr15:22933783 synonymous SNV . 0 20 hm7G_associated_SNPs_29328 0 0 1 0 2 CYFIP1 chr15:22933748 3'AG 22933748 Downstream 36bp 26798 chr15 22933783 22933783 1 + C T HNSC 22933784 + 22933764 22933804 41 TCGAAGTGATTTCTGGCTACGAAGAGCTCCTGGCAGATATT TCGAAGTGATTTCTGGCTATGAAGAGCTCCTGGCAGATATT < 41bp 0.530848839887963 0.740515455621439 NA NA prediction 0.419333231466952 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22933784 chr15:22933783 synonymous SNV . 0 20 hm7G_associated_SNPs_29328 0 0 1 0 2 CYFIP1 chr15:22933876 5'GT 22933876 Upstream 94bp 26799 chr12 10370690 10370690 1 + G T STAD 10370691 + 10370671 10370711 41 GAGAAGGCTCCAAAAGCCAGGGTGCCTGATCTGGACAAGAG GAGAAGGCTCCAAAAGCCATGGTGCCTGATCTGGACAAGAG < 41bp 0.701176401882849 0.910841607886311 NA NA prediction 0.419330412006924 Functional Gain - GABARAPL1 ENSG00000139112 CDS Human protein_coding chr12:10370691 chr12:10370690 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29329 0 0 1 0 2 GABARAPL1 chr12:10370662 3'AG 10370662 Downstream 29bp 26800 chr12 10370690 10370690 1 + G T STAD 10370691 + 10370671 10370711 41 GAGAAGGCTCCAAAAGCCAGGGTGCCTGATCTGGACAAGAG GAGAAGGCTCCAAAAGCCATGGTGCCTGATCTGGACAAGAG < 41bp 0.701176401882849 0.910841607886311 NA NA prediction 0.419330412006924 Functional Gain - GABARAPL1 ENSG00000139112 CDS Human protein_coding chr12:10370691 chr12:10370690 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29329 0 0 1 0 2 GABARAPL1 chr12:10370740 5'GT 10370740 Upstream 51bp 26801 chr17 80393627 80393627 1 + G A UCEC 80393628 + 80393608 80393648 41 AGCAAGAGCAGAACAGCACGGGGAAGTTGTGCCTGTCACAC AGCAAGAGCAGAACAGCACAGGGAAGTTGTGCCTGTCACAC < 41bp 0.478071953218483 0.70966129158015 NA NA prediction 0.419322583160299 Functional Gain - HEXDC ENSG00000169660 CDS Human protein_coding chr17:80393628 chr17:80393627 synonymous SNV . 0 20 hm7G_associated_SNPs_29332 0 0 0 0 1 HEXDC chr17:80393565 3'AG 80393565 Downstream 63bp 26802 chr10 72289057 72289057 1 + G A rs139090199 72289058 + 72289038 72289078 41 ACACGTTGGGCCGGCTCTCGGACAACACCCCTGAGCACTAC ACACGTTGGGCCGGCTCTCAGACAACACCCCTGAGCACTAC < 41bp 0.522751990971268 0.732412147762989 NA NA prediction 0.419320313583443 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72289058 chr10:72289057 synonymous SNV . 0 20 hm7G_associated_SNPs_29333 0 0 1 0 2 PALD1 chr10:72288985 3'AG 72288985 Downstream 73bp 26803 chr10 72289057 72289057 1 + G A rs139090199 72289058 + 72289038 72289078 41 ACACGTTGGGCCGGCTCTCGGACAACACCCCTGAGCACTAC ACACGTTGGGCCGGCTCTCAGACAACACCCCTGAGCACTAC < 41bp 0.522751990971268 0.732412147762989 NA NA prediction 0.419320313583443 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72289058 chr10:72289057 synonymous SNV . 0 20 hm7G_associated_SNPs_29333 0 0 1 0 2 PALD1 chr10:72289087 5'GT 72289087 Upstream 31bp 26804 chr1 45216134 45216134 1 + C T SKCM 45216135 + 45216115 45216155 41 TCTTCGAAGCCGCTCCACTCGCATGTCCACTGTCTCAGAGC TCTTCGAAGCCGCTCCACTTGCATGTCCACTGTCTCAGAGC < 41bp 0.514422385421797 0.724082273485684 NA NA prediction 0.419319776127775 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45216135 chr1:45216134 nonsynonymous SNV 0.151 2 20 hm7G_associated_SNPs_29334 0 0 1 0 1 KIF2C chr1:45216114 3'AG 45216114 Downstream 21bp 26805 chr2 238617222 238617222 1 + C T rs190435153 238617223 + 238617203 238617243 41 CTGCAAAACGGGCGGCCCGCGCGGAGGCTCGCGAGATCCGC CTGCAAAACGGGCGGCCCGTGCGGAGGCTCGCGAGATCCGC < 41bp 0.511239973883781 0.72089442564225 NA NA prediction 0.419308903516938 Functional Gain - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238617223 chr2:238617222 synonymous SNV . 0 20 hm7G_associated_SNPs_29335 0 0 1 0 2 LRRFIP1 chr2:238617187 3'AG 238617187 Downstream 36bp 26806 chr2 238617222 238617222 1 + C T rs190435153 238617223 + 238617203 238617243 41 CTGCAAAACGGGCGGCCCGCGCGGAGGCTCGCGAGATCCGC CTGCAAAACGGGCGGCCCGTGCGGAGGCTCGCGAGATCCGC < 41bp 0.511239973883781 0.72089442564225 NA NA prediction 0.419308903516938 Functional Gain - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238617223 chr2:238617222 synonymous SNV . 0 20 hm7G_associated_SNPs_29335 0 0 1 0 2 LRRFIP1 chr2:238617273 5'GT 238617273 Upstream 52bp 26807 chrX 9905236 9905236 1 + C T UCEC 9905237 + 9905217 9905257 41 CCCATCAAGATCGTGCACTCGGAGAGCCAGCCAGAGAAGGA CCCATCAAGATCGTGCACTTGGAGAGCCAGCCAGAGAAGGA < 41bp 0.525057417539963 0.73471106826567 NA NA prediction 0.419307301451413 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9905237 chrX:9905236 nonsynonymous SNV 0.929 4 20 hm7G_associated_SNPs_29336 0 0 0 0 1 SHROOM2 chrX:9905174 3'AG 9905174 Downstream 63bp 26808 chr16 27224963 27224963 1 + C T SKCM 27224964 + 27224944 27224984 41 GTTAGAAAAAACAGTCCCCCGGCTGCACCGTCCGTCCCTCC GTTAGAAAAAACAGTCCCCTGGCTGCACCGTCCGTCCCTCC < 41bp 0.525261777860272 0.734912436224892 NA NA prediction 0.41930131672924 Functional Gain - KDM8 ENSG00000155666 CDS Human protein_coding chr16:27224964 chr16:27224963 nonsynonymous SNV 0.544 2 20 hm7G_associated_SNPs_29337 0 0 0 0 1 KDM8 chr16:27224906 3'AG 27224906 Downstream 58bp 26809 chr15 74425158 74425158 1 + G A GBM 74425159 + 74425139 74425179 41 GAGTGGCCGGATCATGCCCGGAGCCGTGCGCCTGCGTGGAC GAGTGGCCGGATCATGCCCAGAGCCGTGCGCCTGCGTGGAC < 41bp 0.521867751729422 0.731518239933843 NA NA prediction 0.419300976408843 Functional Gain - ISLR2 ENSG00000167178 CDS Human protein_coding chr15:74425159 chr15:74425158 synonymous SNV . 0 20 hm7G_associated_SNPs_29338 0 0 0 0 1 ISLR2 chr15:74425088 3'AG 74425088 Downstream 71bp 26810 chr3 122842976 122842976 1 + C T COAD 122842977 + 122842957 122842997 41 CAAGGAGGAGTACAGCGTGCGCGGCTTCCCCACCATCTGCT CAAGGAGGAGTACAGCGTGTGCGGCTTCCCCACCATCTGCT < 41bp 0.522338888521287 0.731988521337408 NA NA prediction 0.419299265632241 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122842977 chr3:122842976 nonsynonymous SNV 0.915 4 20 hm7G_associated_SNPs_29339 0 0 1 1 2 PDIA5 chr3:122842913 3'AG 122842913 Downstream 64bp 26811 chr3 122842976 122842976 1 + C T COAD 122842977 + 122842957 122842997 41 CAAGGAGGAGTACAGCGTGCGCGGCTTCCCCACCATCTGCT CAAGGAGGAGTACAGCGTGTGCGGCTTCCCCACCATCTGCT < 41bp 0.522338888521287 0.731988521337408 NA NA prediction 0.419299265632241 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122842977 chr3:122842976 nonsynonymous SNV 0.915 4 20 hm7G_associated_SNPs_29339 0 0 1 1 2 PDIA5 chr3:122843004 5'GT 122843004 Upstream 29bp 26812 chr10 99623773 99623773 1 + C T BLCA 99623774 + 99623754 99623794 41 TTGGGGGCAGCTCCTACCTCGAGGGCTGCCTGGCCTGCGCC TTGGGGGCAGCTCCTACCTTGAGGGCTGCCTGGCCTGCGCC < 41bp 0.52805503292463 0.737702451171986 NA NA prediction 0.419294836494714 Functional Gain - GOLGA7B ENSG00000155265 CDS Human protein_coding chr10:99623774 chr10:99623773 synonymous SNV . 0 20 hm7G_associated_SNPs_29340 0 0 0 0 2 GOLGA7B chr10:99623687 3'AG 99623687 Downstream 87bp 26813 chr10 99623773 99623773 1 + C T BLCA 99623774 + 99623754 99623794 41 TTGGGGGCAGCTCCTACCTCGAGGGCTGCCTGGCCTGCGCC TTGGGGGCAGCTCCTACCTTGAGGGCTGCCTGGCCTGCGCC < 41bp 0.52805503292463 0.737702451171986 NA NA prediction 0.419294836494714 Functional Gain - GOLGA7B ENSG00000155265 CDS Human protein_coding chr10:99623774 chr10:99623773 synonymous SNV . 0 20 hm7G_associated_SNPs_29340 0 0 0 0 2 GOLGA7B chr10:99623839 5'GT 99623839 Upstream 67bp 26814 chr16 56901089 56901089 1 + C T UCEC 56901090 + 56901070 56901110 41 CCAGCAGCGAGAAGAACCCCGAGGAGCCAGTGCGCTTCGGC CCAGCAGCGAGAAGAACCCTGAGGAGCCAGTGCGCTTCGGC < 41bp 0.512251375233846 0.721897337088267 NA NA prediction 0.419291923708841 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56901090 chr16:56901089 synonymous SNV . 0 20 hm7G_associated_SNPs_29342 0 0 0 0 1 SLC12A3 chr16:56901128 5'GT 56901128 Upstream 40bp 26815 chr15 74625132 74625132 1 + G A SKCM 74625133 + 74625113 74625153 41 CGAAGCTGCGGACGGAGCTGGATAAGAACCGCCACCAGCAG CGAAGCTGCGGACGGAGCTAGATAAGAACCGCCACCAGCAG < 41bp 0.504481842476938 0.71412548080997 NA NA prediction 0.419287276666064 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74625133 chr15:74625132 synonymous SNV . 0 20 hm7G_associated_SNPs_29343 0 0 0 0 1 CCDC33 chr15:74625186 5'GT 74625186 Upstream 55bp 26816 chr11 122722513 122722513 1 + C T STAD 122722514 + 122722494 122722534 41 ACAAGTGCTTACATTACAGCGACTCTGTAAGCACAAAGGAA ACAAGTGCTTACATTACAGTGACTCTGTAAGCACAAAGGAA < 41bp 0.502102721365247 0.711744603492176 NA NA prediction 0.419283764253857 Functional Gain - CRTAM ENSG00000109943 CDS Human protein_coding chr11:122722514 chr11:122722513 synonymous SNV . 0 20 hm7G_associated_SNPs_29344 0 0 0 0 1 CRTAM chr11:122722553 5'GT 122722553 Upstream 41bp 26817 chr11 64026357 64026357 1 + G A rs188572550 64026358 + 64026338 64026378 41 TCTGACCTCGGTTCCGCAGGGCAAAGCAACAGGCAAAGATG TCTGACCTCGGTTCCGCAGAGCAAAGCAACAGGCAAAGATG < 41bp 0.511677379120676 0.72131810683651 NA NA prediction 0.419281455431668 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64026358 chr11:64026357 synonymous SNV . 0 20 hm7G_associated_SNPs_29345 0 0 1 0 2 PLCB3 chr11:64026357 3'AG 64026357 Downstream 1bp 26818 chr11 64026357 64026357 1 + G A rs188572550 64026358 + 64026338 64026378 41 TCTGACCTCGGTTCCGCAGGGCAAAGCAACAGGCAAAGATG TCTGACCTCGGTTCCGCAGAGCAAAGCAACAGGCAAAGATG < 41bp 0.511677379120676 0.72131810683651 NA NA prediction 0.419281455431668 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64026358 chr11:64026357 synonymous SNV . 0 20 hm7G_associated_SNPs_29345 0 0 1 0 2 PLCB3 chr11:64026441 5'GT 64026441 Upstream 85bp 26819 chr11 118827129 118827129 1 + G A SKCM 118827130 + 118827110 118827150 41 TGGCTCTGCTGTCCCCAGGGGCTGCAGGTCTCTTCCATCTC TGGCTCTGCTGTCCCCAGGAGCTGCAGGTCTCTTCCATCTC < 41bp 0.533104029793724 0.742742306354093 NA NA prediction 0.419276553120737 Functional Gain - UPK2 ENSG00000110375 CDS Human protein_coding chr11:118827130 chr11:118827129 synonymous SNV . 0 20 hm7G_associated_SNPs_29346 0 0 0 0 1 UPK2 chr11:118827136 5'GT 118827136 Upstream 8bp 26820 chr7 44664106 44664106 1 + C T rs2230445 44664107 + 44664087 44664127 41 TTTCTCAGTGGGACTAGTTCGAACTATGTGGAGGAGATGTA TTTCTCAGTGGGACTAGTTTGAACTATGTGGAGGAGATGTA < 41bp 0.516151129749817 0.725788480608728 NA NA prediction 0.419274701717821 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44664107 chr7:44664106 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_29347 0 0 1 0 1 OGDH chr7:44664164 5'GT 44664164 Upstream 59bp 26821 chr19 6937294 6937294 1 + G A SKCM 6937295 + 6937275 6937315 41 TGCCCAGCTCTTCATCCTGGGCTGCTCCTGGGTGCTGGGCA TGCCCAGCTCTTCATCCTGAGCTGCTCCTGGGTGCTGGGCA < 41bp 0.511813542880724 0.72144853093986 NA NA prediction 0.419269976118271 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6937295 chr19:6937294 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_29348 0 0 0 0 1 ADGRE1 chr19:6937254 3'AG 6937254 Downstream 41bp 26822 chr7 100087265 100087265 1 + G T UCEC 100087266 + 100087246 100087286 41 GAGGAAGGTCCTCTATGGAGGGAGAAAAGCAAAGGAGTTGG GAGGAAGGTCCTCTATGGATGGAGAAAAGCAAAGGAGTTGG < 41bp 0.692395253209712 0.902027990646275 NA NA prediction 0.419265474873125 Functional Gain - NYAP1 ENSG00000166924 CDS Human protein_coding chr7:100087266 chr7:100087265 nonsynonymous SNV 0.946 4 20 hm7G_associated_SNPs_29349 0 0 0 0 1 NYAP1 chr7:100087289 5'GT 100087289 Upstream 25bp 26823 chr16 3707301 3707301 1 + C T UCEC 3707302 + 3707282 3707322 41 AGTGGCTGATCCCCGACAGCGCTGACACCACAGCTACACCC AGTGGCTGATCCCCGACAGTGCTGACACCACAGCTACACCC < 41bp 0.499115279388234 0.709632320773078 NA NA prediction 0.419264641546156 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707302 chr16:3707301 synonymous SNV . 0 20 hm7G_associated_SNPs_29350 0 0 1 0 1 DNASE1 chr16:3707342 5'GT 3707342 Upstream 42bp 26824 chr19 17270248 17270248 1 + C T CESC 17270249 + 17270229 17270269 41 GTTCTGACCAAAAGAAAAACGGTGACCGTCAACGACAAGCT GTTCTGACCAAAAGAAAAATGGTGACCGTCAACGACAAGCT < 41bp 0.509370575013027 0.719002460825485 NA NA prediction 0.419263771624915 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17270249 chr19:17270248 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_29351 0 0 1 0 2 MYO9B chr19:17270205 3'AG 17270205 Downstream 44bp 26825 chr19 17270248 17270248 1 + C T CESC 17270249 + 17270229 17270269 41 GTTCTGACCAAAAGAAAAACGGTGACCGTCAACGACAAGCT GTTCTGACCAAAAGAAAAATGGTGACCGTCAACGACAAGCT < 41bp 0.509370575013027 0.719002460825485 NA NA prediction 0.419263771624915 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17270249 chr19:17270248 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_29351 0 0 1 0 2 MYO9B chr19:17270294 5'GT 17270294 Upstream 47bp 26826 chr17 63221122 63221122 1 + G A UCEC 63221123 + 63221103 63221143 41 CCTTTCCTTCTCTACAGCCGGGCCAGCACATGGCTCCCAGC CCTTTCCTTCTCTACAGCCAGGCCAGCACATGGCTCCCAGC < 41bp 0.54291570652078 0.752545111893037 NA NA prediction 0.419258810744514 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63221123 chr17:63221122 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29352 0 0 0 0 1 RGS9 chr17:63221120 3'AG 63221120 Downstream 3bp 26827 chr1 20945033 20945033 1 + G A GBM 20945034 + 20945014 20945054 41 CTGCTGCCCTCCTCCTTTGGGCCTGAGGACCTGCAGAAGAC CTGCTGCCCTCCTCCTTTGAGCCTGAGGACCTGCAGAAGAC < 41bp 0.506921847993782 0.71654897843518 NA NA prediction 0.419254260882795 Functional Gain - CDA ENSG00000158825 CDS Human protein_coding chr1:20945034 chr1:20945033 nonsynonymous SNV 0.228 3 20 hm7G_associated_SNPs_29353 0 0 0 1 1 CDA chr1:20944945 3'AG 20944945 Downstream 89bp 26828 chr12 53445681 53445681 1 + C T UCEC 53445682 + 53445662 53445702 41 CTTCCGGGAGAAGGTTTTCCGGAAGAAACCTCCAGTCTGTG CTTCCGGGAGAAGGTTTTCTGGAAGAAACCTCCAGTCTGTG < 41bp 0.514546639531247 0.72417373484168 NA NA prediction 0.419254190620866 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53445682 chr12:53445681 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29354 0 0 1 0 2 TNS2 chr12:53445639 3'AG 53445639 Downstream 43bp 26829 chr12 53445681 53445681 1 + C T UCEC 53445682 + 53445662 53445702 41 CTTCCGGGAGAAGGTTTTCCGGAAGAAACCTCCAGTCTGTG CTTCCGGGAGAAGGTTTTCTGGAAGAAACCTCCAGTCTGTG < 41bp 0.514546639531247 0.72417373484168 NA NA prediction 0.419254190620866 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53445682 chr12:53445681 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29354 0 0 1 0 2 TNS2 chr12:53445747 5'GT 53445747 Upstream 67bp 26830 chr19 41622416 41622416 1 + G A LIHC 41622417 + 41622397 41622437 41 TGGGACCCAGGCGGGTGGTGGTCCTCAGCGGGTACCAAGCT TGGGACCCAGGCGGGTGGTAGTCCTCAGCGGGTACCAAGCT < 41bp 0.490199726765883 0.709626879016179 NA NA prediction 0.419253758032358 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622417 chr19:41622416 synonymous SNV . 0 20 hm7G_associated_SNPs_29355 0 0 0 0 1 CYP2F1 chr19:41622360 3'AG 41622360 Downstream 57bp 26831 chr10 71158558 71158558 1 + C T rs145610109 71158559 + 71158539 71158579 41 ATGTGACTGTGGGAGTGGACGGGACACTCTACAAGCTTCAT ATGTGACTGTGGGAGTGGATGGGACACTCTACAAGCTTCAT < 41bp 0.50473146836595 0.714356557525514 NA NA prediction 0.419250178319128 Functional Gain - HK1 ENSG00000156515 CDS Human protein_coding chr10:71158559 chr10:71158558 synonymous SNV . 0 20 hm7G_associated_SNPs_29358 0 0 1 0 1 HK1 chr10:71158584 5'GT 71158584 Upstream 27bp 26832 chr12 110566829 110566829 1 + G T UCEC 110566830 + 110566810 110566850 41 CTCCACTGGCTTCTTCAGAGGACTAATGAACTGAAGAAAAG CTCCACTGGCTTCTTCAGATGACTAATGAACTGAAGAAAAG < 41bp 0.385728442349927 0.709623631334904 NA NA prediction 0.419247262669808 Functional Gain - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110566830 chr12:110566829 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_29359 0 0 1 0 1 IFT81 chr12:110566755 3'AG 110566755 Downstream 75bp 26833 chr17 40453375 40453375 1 + G A STAD 40453376 + 40453356 40453396 41 CGTACGCCTGCTGGTGGGCGGGAAGCTGAACGTGCACATGA CGTACGCCTGCTGGTGGGCAGGAAGCTGAACGTGCACATGA < 41bp 0.537106861653209 0.746727682395691 NA NA prediction 0.419241641484964 Functional Gain - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40453376 chr17:40453375 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_29360 0 0 1 0 2 STAT5A chr17:40453293 3'AG 40453293 Downstream 83bp 26834 chr17 40453375 40453375 1 + G A STAD 40453376 + 40453356 40453396 41 CGTACGCCTGCTGGTGGGCGGGAAGCTGAACGTGCACATGA CGTACGCCTGCTGGTGGGCAGGAAGCTGAACGTGCACATGA < 41bp 0.537106861653209 0.746727682395691 NA NA prediction 0.419241641484964 Functional Gain - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40453376 chr17:40453375 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_29360 0 0 1 0 2 STAT5A chr17:40453472 5'GT 40453472 Upstream 98bp 26835 chr1 92568096 92568096 1 + G T ACC 92568097 + 92568077 92568117 41 TTCTTAGGAAAAAGATAATGGAGATTGGGATATCACAAAAG TTCTTAGGAAAAAGATAATTGAGATTGGGATATCACAAAAG < 41bp 0.389784794376578 0.709620435038287 NA NA prediction 0.419240870076574 Functional Gain - BTBD8 ENSG00000189195 CDS Human protein_coding chr1:92568097 chr1:92568096 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_29361 0 0 0 1 1 BTBD8 chr1:92568030 3'AG 92568030 Downstream 67bp 26836 chr1 110738260 110738260 1 + C T rs191476871 110738261 + 110738241 110738281 41 TGTTGTTCGTCCAGCGCTCCGGAAACTACTTTGTCACCATG TGTTGTTCGTCCAGCGCTCTGGAAACTACTTTGTCACCATG < 41bp 0.517666028252383 0.727283851554079 NA NA prediction 0.419235646603391 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110738261 chr1:110738260 synonymous SNV . 0 20 hm7G_associated_SNPs_29362 0 0 0 0 1 SLC6A17 chr1:110738208 3'AG 110738208 Downstream 53bp 26837 chr12 69121133 69121133 1 + G T LUAD 69121134 + 69121114 69121154 41 CTTTTTTTCCTATGAAGGAGGAAGTTTCTATTGAAGTTTTA CTTTTTTTCCTATGAAGGATGAAGTTTCTATTGAAGTTTTA < 41bp 0.400271077266259 0.709617704722508 NA NA prediction 0.419235409445017 Functional Gain - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69121134 chr12:69121133 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29363 0 0 1 0 2 NUP107 chr12:69121131 3'AG 69121131 Downstream 3bp 26838 chr12 69121133 69121133 1 + G T LUAD 69121134 + 69121114 69121154 41 CTTTTTTTCCTATGAAGGAGGAAGTTTCTATTGAAGTTTTA CTTTTTTTCCTATGAAGGATGAAGTTTCTATTGAAGTTTTA < 41bp 0.400271077266259 0.709617704722508 NA NA prediction 0.419235409445017 Functional Gain - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69121134 chr12:69121133 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29363 0 0 1 0 2 NUP107 chr12:69121169 5'GT 69121169 Upstream 37bp 26839 chr1 27587550 27587550 1 + C T UCEC 27587551 + 27587531 27587571 41 AACCATTAAGAAAAGATGGCGAAAGTCAACATAACTAGAGA AACCATTAAGAAAAGATGGTGAAAGTCAACATAACTAGAGA < 41bp 0.499527548801204 0.709616121567443 NA NA prediction 0.419232243134886 Functional Gain - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27587551 chr1:27587550 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29364 0 0 1 0 1 WDTC1 chr1:27587593 5'GT 27587593 Upstream 44bp 26840 chr9 130965819 130965819 1 + G A SKCM 130965820 + 130965800 130965840 41 AGACGCCTTCTCTGCCATCGGCCAGAACGCGGACCTCGACC AGACGCCTTCTCTGCCATCAGCCAGAACGCGGACCTCGACC < 41bp 0.544009001634734 0.753624171087475 NA NA prediction 0.419230338905484 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130965820 chr9:130965819 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_29365 0 0 1 0 1 DNM1 chr9:130965910 5'GT 130965910 Upstream 92bp 26841 chr11 117864113 117864113 1 + G A rs2228054 117864114 + 117864094 117864134 41 TTGCCATTCGCAAGGTGCCGGGAAACTTCACGGTATGGGGT TTGCCATTCGCAAGGTGCCAGGAAACTTCACGGTATGGGGT < 41bp 0.514255647756183 0.723870512964592 NA NA prediction 0.419229730416817 Functional Gain - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117864114 chr11:117864113 synonymous SNV . 0 20 hm7G_associated_SNPs_29366 1 0 0 0 1 IL10RA chr11:117864125 5'GT 117864125 Upstream 13bp 26842 chr17 7604852 7604852 1 + C T rs35307405 7604853 + 7604833 7604873 41 AGCTCCGGGCTTCCTTTCGCGCCTACAACCACCTGGTAGGG AGCTCCGGGCTTCCTTTCGTGCCTACAACCACCTGGTAGGG < 41bp 0.501247583978651 0.710855457389332 NA NA prediction 0.419215746821364 Functional Gain - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604853 chr17:7604852 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29370 0 0 1 0 2 WRAP53 chr17:7604777 3'AG 7604777 Downstream 76bp 26843 chr17 7604852 7604852 1 + C T rs35307405 7604853 + 7604833 7604873 41 AGCTCCGGGCTTCCTTTCGCGCCTACAACCACCTGGTAGGG AGCTCCGGGCTTCCTTTCGTGCCTACAACCACCTGGTAGGG < 41bp 0.501247583978651 0.710855457389332 NA NA prediction 0.419215746821364 Functional Gain - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604853 chr17:7604852 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29370 0 0 1 0 2 WRAP53 chr17:7604867 5'GT 7604867 Upstream 16bp 26844 chr6 35715159 35715159 1 + G T LUAD 35715160 + 35715140 35715180 41 GTGCATCCACAGCTGCGACGGGTGATGCCTGCCTTGATGGA GTGCATCCACAGCTGCGACTGGTGATGCCTGCCTTGATGGA < 41bp 0.698899286026527 0.90849687187942 NA NA prediction 0.419195171705785 Functional Gain - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715160 chr6:35715159 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_29372 0 0 0 0 1 ARMC12 chr6:35715211 5'GT 35715211 Upstream 53bp 26845 chrX 135095129 135095129 1 + C T UCEC 135095130 + 135095110 135095150 41 GACAAAGTTCACCAAATTACGGGAGTTCCAGTTGTTGGAGA GACAAAGTTCACCAAATTATGGGAGTTCCAGTTGTTGGAGA < 41bp 0.505569079630403 0.715164586541615 NA NA prediction 0.419191013822424 Functional Gain - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135095130 chrX:135095129 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_29373 0 0 1 0 1 SLC9A6 chrX:135095213 5'GT 135095213 Upstream 85bp 26846 chr1 150528719 150528719 1 + C T COAD 150528720 + 150528700 150528740 41 GGGTGATGATTCTACCTGTCGCCTTGTTTCGGGGAACCTCA GGGTGATGATTCTACCTGTTGCCTTGTTTCGGGGAACCTCA < 41bp 0.521922182086836 0.731517029823017 NA NA prediction 0.419189695472361 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150528720 chr1:150528719 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_29374 0 0 1 0 1 ADAMTSL4 chr1:150528638 3'AG 150528638 Downstream 82bp 26847 chr1 205549973 205549973 1 + C T CESC 205549974 + 205549954 205549994 41 AAGCCTTGGTCCAACCAGACGTTCCCAGGGCTGACTCCAAA AAGCCTTGGTCCAACCAGATGTTCCCAGGGCTGACTCCAAA < 41bp 0.509713805472255 0.719307497892005 NA NA prediction 0.419187384839499 Functional Gain - MFSD4A ENSG00000174514 CDS Human protein_coding chr1:205549974 chr1:205549973 nonsynonymous SNV 0.460 2 20 hm7G_associated_SNPs_29376 0 0 0 0 1 MFSD4A chr1:205550049 5'GT 205550049 Upstream 77bp 26848 chr12 64456834 64456834 1 + C T PAAD 64456835 + 64456815 64456855 41 ATAATTTAGAGCCCAGGAGCGATAAGCAGAGATTCATGGAG ATAATTTAGAGCCCAGGAGTGATAAGCAGAGATTCATGGAG < 41bp 0.499556710427495 0.709588633298575 NA NA prediction 0.419177266597151 Functional Gain - SRGAP1 ENSG00000196935 CDS Human protein_coding chr12:64456835 chr12:64456834 synonymous SNV . 0 20 hm7G_associated_SNPs_29378 0 0 0 0 1 SRGAP1 chr12:64456918 5'GT 64456918 Upstream 85bp 26849 chr1 100964501 100964501 1 + C T STAD 100964502 + 100964482 100964522 41 CAGCTTTTCCATAAACTCCCGGCTAGCCAGTTCTCTAGGGA CAGCTTTTCCATAAACTCCTGGCTAGCCAGTTCTCTAGGGA < 41bp 0.510659772531875 0.720244565811841 NA NA prediction 0.419169586559932 Functional Gain - CDC14A ENSG00000079335 CDS Human protein_coding chr1:100964502 chr1:100964501 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29379 0 0 1 0 1 CDC14A chr1:100964485 3'AG 100964485 Downstream 17bp 26850 chr15 39882794 39882794 1 + C T UCEC 39882795 + 39882775 39882815 41 GTGATGCCTGTGATGATGACGATGACAATGATAAAATTCCA GTGATGCCTGTGATGATGATGATGACAATGATAAAATTCCA < 41bp 0.494272824711024 0.709581102084183 NA NA prediction 0.419162204168366 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39882795 chr15:39882794 synonymous SNV . 0 20 hm7G_associated_SNPs_29381 0 0 0 0 1 THBS1 chr15:39882717 3'AG 39882717 Downstream 78bp 26851 chr12 133197056 133197056 1 + G A COAD 133197057 + 133197037 133197077 41 CATCGCCGACCGCACAGACGGGTACCTGAAGCGCTGCACGT CATCGCCGACCGCACAGACAGGTACCTGAAGCGCTGCACGT < 41bp 0.574331356947763 0.783912095949872 NA NA prediction 0.419161478004217 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197057 chr12:133197056 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_29382 0 0 0 0 1 P2RX2 chr12:133197031 3'AG 133197031 Downstream 26bp 26852 chr14 24523000 24523000 1 + G A THCA 24523001 + 24522981 24523021 41 CAAAGCCCAAGAAGTTTGAGGACCGAGTGCTGGTGAGGGCA CAAAGCCCAAGAAGTTTGAAGACCGAGTGCTGGTGAGGGCA < 41bp 0.519883965594217 0.729464481525262 NA NA prediction 0.419161031862091 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24523001 chr14:24523000 synonymous SNV . 0 20 hm7G_associated_SNPs_29383 0 0 0 0 2 CARMIL3 chr14:24522918 3'AG 24522918 Downstream 83bp 26853 chr14 24523000 24523000 1 + G A THCA 24523001 + 24522981 24523021 41 CAAAGCCCAAGAAGTTTGAGGACCGAGTGCTGGTGAGGGCA CAAAGCCCAAGAAGTTTGAAGACCGAGTGCTGGTGAGGGCA < 41bp 0.519883965594217 0.729464481525262 NA NA prediction 0.419161031862091 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24523001 chr14:24523000 synonymous SNV . 0 20 hm7G_associated_SNPs_29383 0 0 0 0 2 CARMIL3 chr14:24523012 5'GT 24523012 Upstream 13bp 26854 chr12 113313505 113313505 1 + C T GBM 113313506 + 113313486 113313526 41 ACCCCAGGAGGAAGCAGACCGGGTCCTGGGCCAGCAGGACG ACCCCAGGAGGAAGCAGACTGGGTCCTGGGCCAGCAGGACG < 41bp 0.502125585920695 0.711705330699988 NA NA prediction 0.419159489558586 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113313506 chr12:113313505 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_29384 0 0 0 0 1 RPH3A chr12:113313484 3'AG 113313484 Downstream 22bp 26855 chr4 100534246 100534246 1 + C T HNSC 100534247 + 100534227 100534267 41 AAATGCTGTCAGCATCTGGCGACCCTATCAGTGTGGTGAAA AAATGCTGTCAGCATCTGGTGACCCTATCAGTGTGGTGAAA < 41bp 0.507898924395301 0.717474498175671 NA NA prediction 0.419151147560741 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100534247 chr4:100534246 synonymous SNV . 0 20 hm7G_associated_SNPs_29386 0 0 1 0 1 MTTP chr4:100534297 5'GT 100534297 Upstream 52bp 26856 chr5 140237156 140237156 1 + C T BLCA 140237157 + 140237137 140237177 41 TCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAA TCGCTGTCGAGCTACGTGTTGGTGCACGCGGAGAGCGGCAA < 41bp 0.506247130003723 0.715821696235846 NA NA prediction 0.419149132464247 Functional Gain - PCDHA10 ENSG00000250120 CDS Human protein_coding chr5:140237157 chr5:140237156 nonsynonymous SNV 0.949 3 20 hm7G_associated_SNPs_29387 0 0 0 0 1 PCDHA10 chr5:140237232 5'GT 140237232 Upstream 77bp 26857 chr21 42754354 42754354 1 + G A rs201747888 42754355 + 42754335 42754375 41 AGCCCAGAACGTCATGGCCGGGAATGGCCGGGGCATCAGCC AGCCCAGAACGTCATGGCCAGGAATGGCCGGGGCATCAGCC < 41bp 0.49670463692306 0.709565615307416 NA NA prediction 0.419131230614832 Functional Gain - MX2 ENSG00000183486 CDS Human protein_coding chr21:42754355 chr21:42754354 nonsynonymous SNV 0.012 4 20 hm7G_associated_SNPs_29389 0 0 1 0 1 MX2 chr21:42754337 3'AG 42754337 Downstream 18bp 26858 chr22 39477577 39477577 1 + G T LUAD 39477578 + 39477558 39477598 41 ATTACTGCACATCATGCTGGGGGAGATTCTCAGGTGAGGGT ATTACTGCACATCATGCTGTGGGAGATTCTCAGGTGAGGGT < 41bp 0.370471452793572 0.709565092254774 NA NA prediction 0.419130184509548 Functional Gain - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39477578 chr22:39477577 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_29390 0 0 0 0 1 APOBEC3G chr22:39477590 5'GT 39477590 Upstream 14bp 26859 chr19 12954346 12954346 1 + G A CESC 12954347 + 12954327 12954367 41 CTTGGCTGGGTTCCAGGGCGGACGGACGCCGGTGGTCTCTG CTTGGCTGGGTTCCAGGGCAGACGGACGCCGGTGGTCTCTG < 41bp 0.49393139897928 0.709563210117041 NA NA prediction 0.419126420234083 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12954347 chr19:12954346 synonymous SNV . 0 20 hm7G_associated_SNPs_29391 0 0 0 0 2 MAST1 chr19:12954343 3'AG 12954343 Downstream 4bp 26860 chr19 12954346 12954346 1 + G A CESC 12954347 + 12954327 12954367 41 CTTGGCTGGGTTCCAGGGCGGACGGACGCCGGTGGTCTCTG CTTGGCTGGGTTCCAGGGCAGACGGACGCCGGTGGTCTCTG < 41bp 0.49393139897928 0.709563210117041 NA NA prediction 0.419126420234083 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12954347 chr19:12954346 synonymous SNV . 0 20 hm7G_associated_SNPs_29391 0 0 0 0 2 MAST1 chr19:12954421 5'GT 12954421 Upstream 76bp 26861 chr11 34154602 34154602 1 + C T COAD 34154603 + 34154583 34154623 41 ATGATCTCCAGATGCTCTCCGATGCACCTGCTCACCATCTC ATGATCTCCAGATGCTCTCTGATGCACCTGCTCACCATCTC < 41bp 0.494695194870317 0.709559323338582 NA NA prediction 0.419118646677165 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34154603 chr11:34154602 synonymous SNV . 0 20 hm7G_associated_SNPs_29392 0 0 1 0 2 NAT10 chr11:34154573 3'AG 34154573 Downstream 30bp 26862 chr11 34154602 34154602 1 + C T COAD 34154603 + 34154583 34154623 41 ATGATCTCCAGATGCTCTCCGATGCACCTGCTCACCATCTC ATGATCTCCAGATGCTCTCTGATGCACCTGCTCACCATCTC < 41bp 0.494695194870317 0.709559323338582 NA NA prediction 0.419118646677165 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34154603 chr11:34154602 synonymous SNV . 0 20 hm7G_associated_SNPs_29392 0 0 1 0 2 NAT10 chr11:34154689 5'GT 34154689 Upstream 88bp 26863 chr22 38470949 38470949 1 + G A UCS 38470950 + 38470930 38470970 41 GACTGCTACGCAGTGCTGCGGGATGCCGACGTCTTCCCCAT GACTGCTACGCAGTGCTGCAGGATGCCGACGTCTTCCCCAT < 41bp 0.532828820096962 0.742384988612033 NA NA prediction 0.419112337030143 Functional Gain - PICK1 ENSG00000100151 CDS Human protein_coding chr22:38470950 chr22:38470949 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_29393 0 0 1 0 1 PICK1 chr22:38470871 3'AG 38470871 Downstream 79bp 26864 chrX 100492763 100492763 1 + C T COAD 100492764 + 100492744 100492784 41 CAGGAGAAGGAGACACATGCGGTAGGTTAGAATCAGAGAAG CAGGAGAAGGAGACACATGTGGTAGGTTAGAATCAGAGAAG < 41bp 0.489486310749913 0.709555501753179 NA NA prediction 0.419111003506359 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100492764 chrX:100492763 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_29394 0 0 0 0 1 DRP2 chrX:100492764 5'GT 100492764 Upstream 2bp 26865 chrX 153695619 153695619 1 + C T BRCA 153695620 + 153695600 153695640 41 CCATGCTGTGTAAGGCCCCCGGCATCTTTCTTGGGCGGCCC CCATGCTGTGTAAGGCCCCTGGCATCTTTCTTGGGCGGCCC < 41bp 0.50544863252653 0.715000049460519 NA NA prediction 0.419102833867979 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695620 chrX:153695619 synonymous SNV . 0 20 hm7G_associated_SNPs_29395 0 0 0 0 1 PLXNA3 chrX:153695575 3'AG 153695575 Downstream 45bp 26866 chr1 221054600 221054600 1 + G A OV 221054601 + 221054581 221054621 41 TCTCAGGCCTGCAGCCCTCGGCCGGCCAGTTCTTCGCATCT TCTCAGGCCTGCAGCCCTCAGCCGGCCAGTTCTTCGCATCT < 41bp 0.487789997896904 0.709551024460331 NA NA prediction 0.419102048920662 Functional Gain - HLX ENSG00000136630 CDS Human protein_coding chr1:221054601 chr1:221054600 synonymous SNV . 0 20 hm7G_associated_SNPs_29396 0 0 0 0 1 HLX chr1:221054536 3'AG 221054536 Downstream 65bp 26867 chr7 1027150 1027150 1 + G A READ 1027151 + 1027131 1027171 41 GGCCGACACACAGCTGGGCGGCTTCCTGCTCCCCAAGGTGG GGCCGACACACAGCTGGGCAGCTTCCTGCTCCCCAAGGTGG < 41bp 0.569175554017152 0.778726450043862 NA NA prediction 0.419101792053419 Functional Gain - CYP2W1 ENSG00000073067 CDS Human protein_coding chr7:1027151 chr7:1027150 nonsynonymous SNV 0.049 2 20 hm7G_associated_SNPs_29397 0 0 0 0 1 CYP2W1 chr7:1027167 5'GT 1027167 Upstream 18bp 26868 chr19 6836517 6836517 1 + C T UCEC 6836518 + 6836498 6836538 41 AGCCATTGGACCCTTTCTACGGCTCAACCCTGGAGACATTG AGCCATTGGACCCTTTCTATGGCTCAACCCTGGAGACATTG < 41bp 0.533614136292187 0.743164823274473 NA NA prediction 0.419101373964572 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6836518 chr19:6836517 nonsynonymous SNV 0.770 2 20 hm7G_associated_SNPs_29398 0 0 1 0 2 VAV1 chr19:6836443 3'AG 6836443 Downstream 75bp 26869 chr19 6836517 6836517 1 + C T UCEC 6836518 + 6836498 6836538 41 AGCCATTGGACCCTTTCTACGGCTCAACCCTGGAGACATTG AGCCATTGGACCCTTTCTATGGCTCAACCCTGGAGACATTG < 41bp 0.533614136292187 0.743164823274473 NA NA prediction 0.419101373964572 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6836518 chr19:6836517 nonsynonymous SNV 0.770 2 20 hm7G_associated_SNPs_29398 0 0 1 0 2 VAV1 chr19:6836579 5'GT 6836579 Upstream 63bp 26870 chr12 109696828 109696828 1 + C T rs61731614 109696829 + 109696809 109696849 41 CAGACTCAGCCTACAAAACCGCCCAGGCCGTCAAGGACTTC CAGACTCAGCCTACAAAACTGCCCAGGCCGTCAAGGACTTC < 41bp 0.505387134738632 0.714936707189907 NA NA prediction 0.41909914490255 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109696829 chr12:109696828 synonymous SNV . 0 20 hm7G_associated_SNPs_29399 0 0 0 0 2 ACACB chr12:109696778 3'AG 109696778 Downstream 51bp 26871 chr12 109696828 109696828 1 + C T rs61731614 109696829 + 109696809 109696849 41 CAGACTCAGCCTACAAAACCGCCCAGGCCGTCAAGGACTTC CAGACTCAGCCTACAAAACTGCCCAGGCCGTCAAGGACTTC < 41bp 0.505387134738632 0.714936707189907 NA NA prediction 0.41909914490255 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109696829 chr12:109696828 synonymous SNV . 0 20 hm7G_associated_SNPs_29399 0 0 0 0 2 ACACB chr12:109696913 5'GT 109696913 Upstream 86bp 26872 chr4 90833184 90833184 1 + C T rs61730036 90833185 + 90833165 90833205 41 TGTCCTGGATACAGTGGGCCGAAATGTCAACTAAGAGGTAC TGTCCTGGATACAGTGGGCTGAAATGTCAACTAAGAGGTAC < 41bp 0.509460651632272 0.719009999600757 NA NA prediction 0.41909869593697 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90833185 chr4:90833184 nonsynonymous SNV 0.395 0 20 hm7G_associated_SNPs_29400 0 0 0 0 2 MMRN1 chr4:90833095 3'AG 90833095 Downstream 90bp 26873 chr4 90833184 90833184 1 + C T rs61730036 90833185 + 90833165 90833205 41 TGTCCTGGATACAGTGGGCCGAAATGTCAACTAAGAGGTAC TGTCCTGGATACAGTGGGCTGAAATGTCAACTAAGAGGTAC < 41bp 0.509460651632272 0.719009999600757 NA NA prediction 0.41909869593697 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90833185 chr4:90833184 nonsynonymous SNV 0.395 0 20 hm7G_associated_SNPs_29400 0 0 0 0 2 MMRN1 chr4:90833201 5'GT 90833201 Upstream 18bp 26874 chr19 54403952 54403952 1 + C T LUAD 54403953 + 54403933 54403973 41 GTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACCTTC GTAAGGAGAACGTCTTCCCTGGGACGACAACCCGCACCTTC < 41bp 0.508101379346102 0.717648124092006 NA NA prediction 0.419093489491809 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403953 chr19:54403952 synonymous SNV . 0 20 hm7G_associated_SNPs_29402 0 0 0 0 2 PRKCG chr19:54403865 3'AG 54403865 Downstream 88bp 26875 chr19 54403952 54403952 1 + C T LUAD 54403953 + 54403933 54403973 41 GTAAGGAGAACGTCTTCCCCGGGACGACAACCCGCACCTTC GTAAGGAGAACGTCTTCCCTGGGACGACAACCCGCACCTTC < 41bp 0.508101379346102 0.717648124092006 NA NA prediction 0.419093489491809 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403953 chr19:54403952 synonymous SNV . 0 20 hm7G_associated_SNPs_29402 0 0 0 0 2 PRKCG chr19:54404003 5'GT 54404003 Upstream 52bp 26876 chr20 39974502 39974502 1 + G A rs75620173 39974503 + 39974483 39974523 41 ACGGTGAAGGAGCTGTACCGGGGCCTGAACCCAGCCACACT ACGGTGAAGGAGCTGTACCAGGGCCTGAACCCAGCCACACT < 41bp 0.488764029324668 0.709545384214748 NA NA prediction 0.419090768429496 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974503 chr20:39974502 nonsynonymous SNV 0.921 1 20 hm7G_associated_SNPs_29403 0 0 1 0 1 LPIN3 chr20:39974436 3'AG 39974436 Downstream 67bp 26877 chr15 43444012 43444012 1 + C T UCEC 43444013 + 43443993 43444033 41 GGATTTTTGCTTTTGATCACGACCTCTTTAGCTTTGCAGAT GGATTTTTGCTTTTGATCATGACCTCTTTAGCTTTGCAGAT < 41bp 0.509482525792201 0.719024538822899 NA NA prediction 0.419084026061397 Functional Gain - TMEM62 ENSG00000137842 CDS Human protein_coding chr15:43444013 chr15:43444012 synonymous SNV . 0 20 hm7G_associated_SNPs_29404 0 0 0 0 1 TMEM62 chr15:43443988 3'AG 43443988 Downstream 25bp 26878 chr17 7911305 7911305 1 + C T COAD 7911306 + 7911286 7911326 41 GCATGTCAGACATTCGCAGCGGCCCCAGCCAACACTTGGAC GCATGTCAGACATTCGCAGTGGCCCCAGCCAACACTTGGAC < 41bp 0.505356327519589 0.714897708889645 NA NA prediction 0.419082762740111 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7911306 chr17:7911305 synonymous SNV . 0 20 hm7G_associated_SNPs_29405 0 0 0 0 2 GUCY2D chr17:7911249 3'AG 7911249 Downstream 57bp 26879 chr17 7911305 7911305 1 + C T COAD 7911306 + 7911286 7911326 41 GCATGTCAGACATTCGCAGCGGCCCCAGCCAACACTTGGAC GCATGTCAGACATTCGCAGTGGCCCCAGCCAACACTTGGAC < 41bp 0.505356327519589 0.714897708889645 NA NA prediction 0.419082762740111 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7911306 chr17:7911305 synonymous SNV . 0 20 hm7G_associated_SNPs_29405 0 0 0 0 2 GUCY2D chr17:7911350 5'GT 7911350 Upstream 46bp 26880 chr12 108626600 108626600 1 + C T BLCA 108626601 + 108626581 108626621 41 TGCTGGCAACACGTGGGCTCGCCACCTCATTGAATTGGCCA TGCTGGCAACACGTGGGCTTGCCACCTCATTGAATTGGCCA < 41bp 0.500490512689497 0.710028773729176 NA NA prediction 0.419076522079358 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108626601 chr12:108626600 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29406 0 0 0 0 2 WSCD2 chr12:108626508 3'AG 108626508 Downstream 93bp 26881 chr12 108626600 108626600 1 + C T BLCA 108626601 + 108626581 108626621 41 TGCTGGCAACACGTGGGCTCGCCACCTCATTGAATTGGCCA TGCTGGCAACACGTGGGCTTGCCACCTCATTGAATTGGCCA < 41bp 0.500490512689497 0.710028773729176 NA NA prediction 0.419076522079358 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108626601 chr12:108626600 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29406 0 0 0 0 2 WSCD2 chr12:108626672 5'GT 108626672 Upstream 73bp 26882 chr15 76016645 76016645 1 + G A SKCM 76016646 + 76016626 76016666 41 AGCAGACCCCTGTCATCATGGCCAAGATCAAAGGTGAGAGC AGCAGACCCCTGTCATCATAGCCAAGATCAAAGGTGAGAGC < 41bp 0.546085044857837 0.755620774008699 NA NA prediction 0.419071458301724 Functional Gain - ODF3L1 ENSG00000182950 CDS Human protein_coding chr15:76016646 chr15:76016645 nonsynonymous SNV 0.803 0 20 hm7G_associated_SNPs_29407 0 0 0 0 1 ODF3L1 chr15:76016658 5'GT 76016658 Upstream 14bp 26883 chr9 129148926 129148926 1 + C T UCEC 129148927 + 129148907 129148947 41 TTCATCCCAATTCAGGAGACGGTGGACACACGTGAGTCATC TTCATCCCAATTCAGGAGATGGTGGACACACGTGAGTCATC < 41bp 0.512196302216353 0.721731936838747 NA NA prediction 0.419071269244789 Functional Gain - MVB12B ENSG00000196814 CDS Human protein_coding chr9:129148927 chr9:129148926 nonsynonymous SNV 0.926 3 20 hm7G_associated_SNPs_29408 0 0 1 0 1 MVB12B chr9:129148937 5'GT 129148937 Upstream 12bp 26884 chr7 142564759 142564759 1 + G A SKCM 142564760 + 142564740 142564780 41 TCTATGGTTTCCAGGTGCGGGCCCGGACTGCTGCCGGCCAC TCTATGGTTTCCAGGTGCGAGCCCGGACTGCTGCCGGCCAC < 41bp 0.492945172203453 0.709531117288055 NA NA prediction 0.41906223457611 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564760 chr7:142564759 synonymous SNV . 0 20 hm7G_associated_SNPs_29410 0 0 0 0 3 EPHB6 chr7:142564661 3'AG 142564661 Downstream 99bp 26885 chr7 142564759 142564759 1 + G A SKCM 142564760 + 142564740 142564780 41 TCTATGGTTTCCAGGTGCGGGCCCGGACTGCTGCCGGCCAC TCTATGGTTTCCAGGTGCGAGCCCGGACTGCTGCCGGCCAC < 41bp 0.492945172203453 0.709531117288055 NA NA prediction 0.41906223457611 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564760 chr7:142564759 synonymous SNV . 0 20 hm7G_associated_SNPs_29410 0 0 0 0 3 EPHB6 chr7:142564696 3'AG 142564696 Downstream 64bp 26886 chr7 142564759 142564759 1 + G A SKCM 142564760 + 142564740 142564780 41 TCTATGGTTTCCAGGTGCGGGCCCGGACTGCTGCCGGCCAC TCTATGGTTTCCAGGTGCGAGCCCGGACTGCTGCCGGCCAC < 41bp 0.492945172203453 0.709531117288055 NA NA prediction 0.41906223457611 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142564760 chr7:142564759 synonymous SNV . 0 20 hm7G_associated_SNPs_29410 0 0 0 0 3 EPHB6 chr7:142564823 5'GT 142564823 Upstream 65bp 26887 chr1 41283893 41283893 1 + G A UCEC 41283894 + 41283874 41283914 41 CGTCCGGGTCTGGTCCGCCGGATGCTGCTGCCGCTACCGAG CGTCCGGGTCTGGTCCGCCAGATGCTGCTGCCGCTACCGAG < 41bp 0.504055821878339 0.71358640760607 NA NA prediction 0.419061171455462 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41283894 chr1:41283893 nonsynonymous SNV 0.889 5 20 hm7G_associated_SNPs_29411 0 0 0 0 2 KCNQ4 chr1:41283836 3'AG 41283836 Downstream 58bp 26888 chr1 41283893 41283893 1 + G A UCEC 41283894 + 41283874 41283914 41 CGTCCGGGTCTGGTCCGCCGGATGCTGCTGCCGCTACCGAG CGTCCGGGTCTGGTCCGCCAGATGCTGCTGCCGCTACCGAG < 41bp 0.504055821878339 0.71358640760607 NA NA prediction 0.419061171455462 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41283894 chr1:41283893 nonsynonymous SNV 0.889 5 20 hm7G_associated_SNPs_29411 0 0 0 0 2 KCNQ4 chr1:41283962 5'GT 41283962 Upstream 70bp 26889 chr14 93043773 93043773 1 + C T STAD 93043774 + 93043754 93043794 41 TCCACTTTCCTTCTCTGAACGAAAGCTCGGCCGAGGTGCTC TCCACTTTCCTTCTCTGAATGAAAGCTCGGCCGAGGTGCTC < 41bp 0.515331229679256 0.724860739049166 NA NA prediction 0.41905901873982 Functional Gain - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043774 chr14:93043773 synonymous SNV . 0 20 hm7G_associated_SNPs_29412 0 0 0 0 2 RIN3 chr14:93043705 3'AG 93043705 Downstream 69bp 26890 chr14 93043773 93043773 1 + C T STAD 93043774 + 93043754 93043794 41 TCCACTTTCCTTCTCTGAACGAAAGCTCGGCCGAGGTGCTC TCCACTTTCCTTCTCTGAATGAAAGCTCGGCCGAGGTGCTC < 41bp 0.515331229679256 0.724860739049166 NA NA prediction 0.41905901873982 Functional Gain - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043774 chr14:93043773 synonymous SNV . 0 20 hm7G_associated_SNPs_29412 0 0 0 0 2 RIN3 chr14:93043822 5'GT 93043822 Upstream 50bp 26891 chr22 18604433 18604433 1 + G A LIHC 18604434 + 18604414 18604454 41 AATGGGAAGCATGTGCCCCGGGCCGTCATGATAGATCTGGA AATGGGAAGCATGTGCCCCAGGCCGTCATGATAGATCTGGA < 41bp 0.495706941287027 0.70952384889228 NA NA prediction 0.419047697784561 Functional Gain - TUBA8 ENSG00000183785;ENSG00000215193 CDS Human protein_coding chr22:18604434 chr22:18604433 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_29415 0 0 0 0 1 TUBA8 chr22:18604468 5'GT 18604468 Upstream 36bp 26892 chr17 77040190 77040190 1 + C T rs201855971 77040191 + 77040171 77040211 41 GAGGAGCTGCCGTCGCCTCCGGACCATGCCGAGAGGTGAGG GAGGAGCTGCCGTCGCCTCTGGACCATGCCGAGAGGTGAGG < 41bp 0.526418686622485 0.735942182917114 NA NA prediction 0.419046992589257 Functional Gain - C1QTNF1 ENSG00000173918 CDS Human protein_coding chr17:77040191 chr17:77040190 nonsynonymous SNV 0.010 0 20 hm7G_associated_SNPs_29416 0 0 0 0 1 C1QTNF1 chr17:77040205 5'GT 77040205 Upstream 16bp 26893 chr5 96358076 96358076 1 + C T STAD 96358077 + 96358057 96358097 41 TGAGGGCACTCCATCTATGCGAGAGCTTCGGTCAGCCCTGC TGAGGGCACTCCATCTATGTGAGAGCTTCGGTCAGCCCTGC < 41bp 0.504501593976169 0.714021939741497 NA NA prediction 0.419040691530656 Functional Gain - LNPEP ENSG00000113441 CDS Human protein_coding chr5:96358077 chr5:96358076 stopgain 0.983 1 20 hm7G_associated_SNPs_29418 0 0 1 0 1 LNPEP chr5:96358004 3'AG 96358004 Downstream 73bp 26894 chr11 70017053 70017053 1 + C T ESCA 70017054 + 70017034 70017074 41 CCCCTGGCCCCACTGTTTGCGCTGCTGAACAACATCATCGA CCCCTGGCCCCACTGTTTGTGCTGCTGAACAACATCATCGA < 41bp 0.514962015827283 0.724479666297471 NA NA prediction 0.419035300940376 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70017054 chr11:70017053 nonsynonymous SNV 0.907 4 20 hm7G_associated_SNPs_29419 0 0 0 1 2 ANO1 chr11:70016993 3'AG 70016993 Downstream 61bp 26895 chr11 70017053 70017053 1 + C T ESCA 70017054 + 70017034 70017074 41 CCCCTGGCCCCACTGTTTGCGCTGCTGAACAACATCATCGA CCCCTGGCCCCACTGTTTGTGCTGCTGAACAACATCATCGA < 41bp 0.514962015827283 0.724479666297471 NA NA prediction 0.419035300940376 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70017054 chr11:70017053 nonsynonymous SNV 0.907 4 20 hm7G_associated_SNPs_29419 0 0 0 1 2 ANO1 chr11:70017145 5'GT 70017145 Upstream 93bp 26896 chr20 1099530 1099530 1 + G A BLCA 1099531 + 1099511 1099551 41 CACACGGTTACTTCGGCTTGGGTGTCGGTGACCAGGTACGC CACACGGTTACTTCGGCTTAGGTGTCGGTGACCAGGTACGC < 41bp 0.516815701235721 0.726332682892243 NA NA prediction 0.419033963313045 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1099531 chr20:1099530 synonymous SNV . 0 20 hm7G_associated_SNPs_29421 0 0 1 0 1 PSMF1 chr20:1099545 5'GT 1099545 Upstream 16bp 26897 chr17 19232099 19232099 1 + C T rs148952227 19232100 + 19232080 19232120 41 CAATCTGTCCCCAAGAACTCGGACCCCTGGGCAGCTTCACA CAATCTGTCCCCAAGAACTTGGACCCCTGGGCAGCTTCACA < 41bp 0.518781434133405 0.728285663580937 NA NA prediction 0.419008458895064 Functional Gain - EPN2 ENSG00000072134 CDS Human protein_coding chr17:19232100 chr17:19232099 nonsynonymous SNV 0.227 1 20 hm7G_associated_SNPs_29424 0 0 1 0 1 EPN2 chr17:19232024 3'AG 19232024 Downstream 76bp 26898 chr8 143565394 143565394 1 + G A PRAD 143565395 + 143565375 143565415 41 AGAATCGGGACAAGTGGGAGGAGGCCCAGCTGGTAGGGCCT AGAATCGGGACAAGTGGGAAGAGGCCCAGCTGGTAGGGCCT < 41bp 0.50557741599425 0.715080212137213 NA NA prediction 0.419005592285926 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143565395 chr8:143565394 synonymous SNV . 0 20 hm7G_associated_SNPs_29426 0 0 0 0 2 ADGRB1 chr8:143565338 3'AG 143565338 Downstream 57bp 26899 chr8 143565394 143565394 1 + G A PRAD 143565395 + 143565375 143565415 41 AGAATCGGGACAAGTGGGAGGAGGCCCAGCTGGTAGGGCCT AGAATCGGGACAAGTGGGAAGAGGCCCAGCTGGTAGGGCCT < 41bp 0.50557741599425 0.715080212137213 NA NA prediction 0.419005592285926 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143565395 chr8:143565394 synonymous SNV . 0 20 hm7G_associated_SNPs_29426 0 0 0 0 2 ADGRB1 chr8:143565406 5'GT 143565406 Upstream 13bp 26900 chr3 52238804 52238804 1 + C T UCEC 52238805 + 52238785 52238825 41 TTTTAAAACTGTGAACCGGCGAGCACACATCTTCCCCATGG TTTTAAAACTGTGAACCGGTGAGCACACATCTTCCCCATGG < 41bp 0.506823923398064 0.716317863260017 NA NA prediction 0.418987879723906 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52238805 chr3:52238804 stopgain 0.963 0 20 hm7G_associated_SNPs_29430 0 0 1 0 1 ALAS1 chr3:52238709 3'AG 52238709 Downstream 96bp 26901 chr11 75438588 75438588 1 + G A SKCM 75438589 + 75438569 75438609 41 CCTGTGCACTGAGAGCACAGGCTTCTCTTCGATCTTCCCCG CCTGTGCACTGAGAGCACAAGCTTCTCTTCGATCTTCCCCG < 41bp 0.544230667646968 0.753723508423341 NA NA prediction 0.418985681552745 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75438589 chr11:75438588 nonsynonymous SNV 0.044 4 20 hm7G_associated_SNPs_29431 0 0 1 0 1 MOGAT2 chr11:75438684 5'GT 75438684 Upstream 97bp 26902 chr17 27001997 27001997 1 + C T BLCA 27001998 + 27001978 27002018 41 CCACCCCTAGCAAAAGTACCGGCGTGTCAAAAAAATGTCAG CCACCCCTAGCAAAAGTACTGGCGTGTCAAAAAAATGTCAG < 41bp 0.496192711035206 0.709491969470421 NA NA prediction 0.418983938940842 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27001998 chr17:27001997 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_29432 0 0 1 0 1 SUPT6H chr17:27001988 3'AG 27001988 Downstream 10bp 26903 chr21 43706065 43706065 1 + G T LUAD 43706066 + 43706046 43706086 41 GCCATATTTGAGGGATTTGGGTCTGAACTGCCCAACCTACC GCCATATTTGAGGGATTTGTGTCTGAACTGCCCAACCTACC < 41bp 0.366062457094327 0.709490669798204 NA NA prediction 0.418981339596407 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43706066 chr21:43706065 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_29433 0 0 0 0 1 ABCG1 chr21:43706104 5'GT 43706104 Upstream 40bp 26904 chr2 75108978 75108978 1 + G A UCEC 75108979 + 75108959 75108999 41 GGAGGTCATGCACGGCACCGGGGACGAGGTGAGCAGGGCGG GGAGGTCATGCACGGCACCAGGGACGAGGTGAGCAGGGCGG < 41bp 0.522038836891373 0.731524977606994 NA NA prediction 0.418972281431243 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75108979 chr2:75108978 nonsynonymous SNV 0.010 3 20 hm7G_associated_SNPs_29436 0 0 1 0 1 HK2 chr2:75108986 5'GT 75108986 Upstream 9bp 26905 chr22 39811641 39811641 1 + C T SARC 39811642 + 39811622 39811662 41 GCACGCCGAGGCCGATGTGCGGCGTGTGCTGCTGCAGGTAA GCACGCCGAGGCCGATGTGTGGCGTGTGCTGCTGCAGGTAA < 41bp 0.506943024725166 0.716427172106889 NA NA prediction 0.418968294763448 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39811642 chr22:39811641 nonsynonymous SNV 0.701 3 20 hm7G_associated_SNPs_29437 0 0 1 0 1 TAB1 chr22:39811658 5'GT 39811658 Upstream 18bp 26906 chr8 27297824 27297824 1 + C T UCEC 27297825 + 27297805 27297845 41 TGGAGAACAAGGATGTCATCGGGGTGCTGGAGAAAGGAGAC TGGAGAACAAGGATGTCATTGGGGTGCTGGAGAAAGGAGAC < 41bp 0.516054468934423 0.725532438441639 NA NA prediction 0.418955939014432 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27297825 chr8:27297824 synonymous SNV . 0 20 hm7G_associated_SNPs_29440 0 0 1 0 1 PTK2B chr8:27297754 3'AG 27297754 Downstream 71bp 26907 chrX 9907312 9907312 1 + C T PAAD 9907313 + 9907293 9907333 41 AGCACGTCGGCCCCCAAGGCGGAGCTGCTGATCAAGATGAA AGCACGTCGGCCCCCAAGGTGGAGCTGCTGATCAAGATGAA < 41bp 0.518999658491232 0.728475253794702 NA NA prediction 0.418951190606941 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9907313 chrX:9907312 nonsynonymous SNV 0.668 1 20 hm7G_associated_SNPs_29441 0 0 0 0 2 SHROOM2 chrX:9907235 3'AG 9907235 Downstream 78bp 26908 chrX 9907312 9907312 1 + C T PAAD 9907313 + 9907293 9907333 41 AGCACGTCGGCCCCCAAGGCGGAGCTGCTGATCAAGATGAA AGCACGTCGGCCCCCAAGGTGGAGCTGCTGATCAAGATGAA < 41bp 0.518999658491232 0.728475253794702 NA NA prediction 0.418951190606941 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9907313 chrX:9907312 nonsynonymous SNV 0.668 1 20 hm7G_associated_SNPs_29441 0 0 0 0 2 SHROOM2 chrX:9907406 5'GT 9907406 Upstream 95bp 26909 chr17 8222092 8222092 1 + C T COAD 8222093 + 8222073 8222113 41 GCCCCTGGTCTCCTGGTCACGGCGCCTGGAATTCCAGGGAG GCCCCTGGTCTCCTGGTCATGGCGCCTGGAATTCCAGGGAG < 41bp 0.524352515632341 0.733825592559096 NA NA prediction 0.41894615385351 Functional Gain - ARHGEF15 ENSG00000198844 CDS Human protein_coding chr17:8222093 chr17:8222092 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_29443 1 0 0 0 1 ARHGEF15 chr17:8222068 3'AG 8222068 Downstream 25bp 26910 chr2 97490892 97490892 1 + C T SKCM 97490893 + 97490873 97490913 41 TCACCCTGGAGGACGTGATCGAGGAGATCATCAGGTCCGAG TCACCCTGGAGGACGTGATTGAGGAGATCATCAGGTCCGAG < 41bp 0.512258899429212 0.7217306346779 NA NA prediction 0.418943470497376 Functional Gain - CNNM3 ENSG00000168763 CDS Human protein_coding chr2:97490893 chr2:97490892 synonymous SNV . 0 20 hm7G_associated_SNPs_29444 0 0 1 0 2 CNNM3 chr2:97490795 3'AG 97490795 Downstream 98bp 26911 chr2 97490892 97490892 1 + C T SKCM 97490893 + 97490873 97490913 41 TCACCCTGGAGGACGTGATCGAGGAGATCATCAGGTCCGAG TCACCCTGGAGGACGTGATTGAGGAGATCATCAGGTCCGAG < 41bp 0.512258899429212 0.7217306346779 NA NA prediction 0.418943470497376 Functional Gain - CNNM3 ENSG00000168763 CDS Human protein_coding chr2:97490893 chr2:97490892 synonymous SNV . 0 20 hm7G_associated_SNPs_29444 0 0 1 0 2 CNNM3 chr2:97490938 5'GT 97490938 Upstream 47bp 26912 chr6 160858171 160858171 1 + C T GBM 160858172 + 160858152 160858192 41 AACCATTGAGCGCCTTGGACGACGCCTCCCCTTTGCGGCAA AACCATTGAGCGCCTTGGATGACGCCTCCCCTTTGCGGCAA < 41bp 0.534781017485411 0.744250468080447 NA NA prediction 0.418938901190073 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160858172 chr6:160858171 stopgain 0.971 1 20 hm7G_associated_SNPs_29445 0 0 0 0 1 SLC22A3 chr6:160858243 5'GT 160858243 Upstream 73bp 26913 chr19 35801493 35801493 1 + C T SKCM 35801494 + 35801474 35801514 41 GGCCTGTGGGCGCCGTGGTCGCCTTTGCCATCCTGATTGCC GGCCTGTGGGCGCCGTGGTTGCCTTTGCCATCCTGATTGCC < 41bp 0.515710796796923 0.725176540552688 NA NA prediction 0.41893148751153 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35801494 chr19:35801493 synonymous SNV . 0 20 hm7G_associated_SNPs_29448 0 0 0 0 2 MAG chr19:35801450 3'AG 35801450 Downstream 44bp 26914 chr19 35801493 35801493 1 + C T SKCM 35801494 + 35801474 35801514 41 GGCCTGTGGGCGCCGTGGTCGCCTTTGCCATCCTGATTGCC GGCCTGTGGGCGCCGTGGTTGCCTTTGCCATCCTGATTGCC < 41bp 0.515710796796923 0.725176540552688 NA NA prediction 0.41893148751153 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35801494 chr19:35801493 synonymous SNV . 0 20 hm7G_associated_SNPs_29448 0 0 0 0 2 MAG chr19:35801546 5'GT 35801546 Upstream 54bp 26915 chr2 71187160 71187160 1 + C T UCEC 71187161 + 71187141 71187181 41 TCATGAACAGCATTGCCCGCGGCCAGAAGATCCCCATCTTC TCATGAACAGCATTGCCCGTGGCCAGAAGATCCCCATCTTC < 41bp 0.504799260145703 0.714264508117628 NA NA prediction 0.41893049594385 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187161 chr2:71187160 synonymous SNV . 0 20 hm7G_associated_SNPs_29450 0 0 0 0 2 ATP6V1B1 chr2:71187069 3'AG 71187069 Downstream 92bp 26916 chr2 71187160 71187160 1 + C T UCEC 71187161 + 71187141 71187181 41 TCATGAACAGCATTGCCCGCGGCCAGAAGATCCCCATCTTC TCATGAACAGCATTGCCCGTGGCCAGAAGATCCCCATCTTC < 41bp 0.504799260145703 0.714264508117628 NA NA prediction 0.41893049594385 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187161 chr2:71187160 synonymous SNV . 0 20 hm7G_associated_SNPs_29450 0 0 0 0 2 ATP6V1B1 chr2:71187208 5'GT 71187208 Upstream 49bp 26917 chr5 40681108 40681108 1 + G T UCEC 40681109 + 40681089 40681129 41 CACTATCATGTCCACTCCCGGGGTCAATTCGTCCGCCTCCT CACTATCATGTCCACTCCCTGGGTCAATTCGTCCGCCTCCT < 41bp 0.378763090133918 0.709464971676638 NA NA prediction 0.418929943353275 Functional Gain - PTGER4 ENSG00000171522 CDS Human protein_coding chr5:40681109 chr5:40681108 nonsynonymous SNV 0.286 1 20 hm7G_associated_SNPs_29451 0 0 0 0 1 PTGER4 chr5:40681053 3'AG 40681053 Downstream 56bp 26918 chr9 125140783 125140783 1 + G A STAD 125140784 + 125140764 125140804 41 CCACTTCCTGCTCACTCACGGGCGCTGGTTCTGGGAGTTTG CCACTTCCTGCTCACTCACAGGCGCTGGTTCTGGGAGTTTG < 41bp 0.514479864936196 0.723942875469707 NA NA prediction 0.418926021067022 Functional Gain - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125140784 chr9:125140783 nonsynonymous SNV 0.625 1 20 hm7G_associated_SNPs_29453 0 0 0 0 2 PTGS1 chr9:125140712 3'AG 125140712 Downstream 72bp 26919 chr9 125140783 125140783 1 + G A STAD 125140784 + 125140764 125140804 41 CCACTTCCTGCTCACTCACGGGCGCTGGTTCTGGGAGTTTG CCACTTCCTGCTCACTCACAGGCGCTGGTTCTGGGAGTTTG < 41bp 0.514479864936196 0.723942875469707 NA NA prediction 0.418926021067022 Functional Gain - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125140784 chr9:125140783 nonsynonymous SNV 0.625 1 20 hm7G_associated_SNPs_29453 0 0 0 0 2 PTGS1 chr9:125140852 5'GT 125140852 Upstream 70bp 26920 chr12 112221061 112221061 1 + C T UCEC 112221062 + 112221042 112221082 41 CAGGGGCCGGCTGCTGAACCGCCTGGCCGATCTGATCGAGC CAGGGGCCGGCTGCTGAACTGCCTGGCCGATCTGATCGAGC < 41bp 0.522796272426236 0.732257939861433 NA NA prediction 0.418923334870394 Functional Gain - ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112221062 chr12:112221061 nonsynonymous SNV 0.896 2 20 hm7G_associated_SNPs_29454 0 0 1 0 2 ALDH2 chr12:112220962 3'AG 112220962 Downstream 100bp 26921 chr12 112221061 112221061 1 + C T UCEC 112221062 + 112221042 112221082 41 CAGGGGCCGGCTGCTGAACCGCCTGGCCGATCTGATCGAGC CAGGGGCCGGCTGCTGAACTGCCTGGCCGATCTGATCGAGC < 41bp 0.522796272426236 0.732257939861433 NA NA prediction 0.418923334870394 Functional Gain - ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112221062 chr12:112221061 nonsynonymous SNV 0.896 2 20 hm7G_associated_SNPs_29454 0 0 1 0 2 ALDH2 chr12:112221102 5'GT 112221102 Upstream 42bp 26922 chr15 91422917 91422917 1 + C T STAD 91422918 + 91422898 91422938 41 CAGTAAGAACCTCACATGGCGGGACATGCAACACCTGGTGG CAGTAAGAACCTCACATGGTGGGACATGCAACACCTGGTGG < 41bp 0.517538250812668 0.726992603456135 NA NA prediction 0.418908705286933 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91422918 chr15:91422917 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_29457 0 0 1 0 2 FURIN chr15:91422901 3'AG 91422901 Downstream 17bp 26923 chr15 91422917 91422917 1 + C T STAD 91422918 + 91422898 91422938 41 CAGTAAGAACCTCACATGGCGGGACATGCAACACCTGGTGG CAGTAAGAACCTCACATGGTGGGACATGCAACACCTGGTGG < 41bp 0.517538250812668 0.726992603456135 NA NA prediction 0.418908705286933 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91422918 chr15:91422917 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_29457 0 0 1 0 2 FURIN chr15:91423004 5'GT 91423004 Upstream 88bp 26924 chr20 33568502 33568502 1 + C T CESC 33568503 + 33568483 33568523 41 TCCCCGCCCCATATATATGCGGTGGCGGACAACGCCTACAA TCCCCGCCCCATATATATGTGGTGGCGGACAACGCCTACAA < 41bp 0.511324014237787 0.720771871036116 NA NA prediction 0.418895713596658 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33568503 chr20:33568502 nonsynonymous SNV 0.357 3 20 hm7G_associated_SNPs_29459 0 0 0 0 1 MYH7B chr20:33568537 5'GT 33568537 Upstream 36bp 26925 chr1 110734657 110734657 1 + G A KIRP 110734658 + 110734638 110734678 41 CCAGGTCTTCTTTGCCTTGGGCCTGGGCTTTGGTGGTGTCA CCAGGTCTTCTTTGCCTTGAGCCTGGGCTTTGGTGGTGTCA < 41bp 0.551278339284995 0.760722849485744 NA NA prediction 0.418889020401498 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110734658 chr1:110734657 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_29461 0 0 0 0 1 SLC6A17 chr1:110734594 3'AG 110734594 Downstream 64bp 26926 chr20 31876632 31876632 1 + C T UCEC 31876633 + 31876613 31876653 41 CCATGCGGGAAAAGCCAGCCGGAGGCATCCCTGTGCTGGGC CCATGCGGGAAAAGCCAGCTGGAGGCATCCCTGTGCTGGGC < 41bp 0.511603327332526 0.721046525749416 NA NA prediction 0.41888639683378 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31876633 chr20:31876632 synonymous SNV . 0 20 hm7G_associated_SNPs_29462 0 0 0 0 2 BPIFB1 chr20:31876547 3'AG 31876547 Downstream 86bp 26927 chr20 31876632 31876632 1 + C T UCEC 31876633 + 31876613 31876653 41 CCATGCGGGAAAAGCCAGCCGGAGGCATCCCTGTGCTGGGC CCATGCGGGAAAAGCCAGCTGGAGGCATCCCTGTGCTGGGC < 41bp 0.511603327332526 0.721046525749416 NA NA prediction 0.41888639683378 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31876633 chr20:31876632 synonymous SNV . 0 20 hm7G_associated_SNPs_29462 0 0 0 0 2 BPIFB1 chr20:31876688 5'GT 31876688 Upstream 57bp 26928 chr4 27010573 27010573 1 + G T UCEC 27010574 + 27010554 27010594 41 ACCCTATCCAATTGCTGGAGGAGTTGATGACTTAGATGAAG ACCCTATCCAATTGCTGGATGAGTTGATGACTTAGATGAAG < 41bp 0.373887855644581 0.70943981584363 NA NA prediction 0.418879631687261 Functional Gain - STIM2 ENSG00000109689 CDS Human protein_coding chr4:27010574 chr4:27010573 stopgain 1.000 1 20 hm7G_associated_SNPs_29464 0 0 1 0 1 STIM2 chr4:27010624 5'GT 27010624 Upstream 52bp 26929 chr16 77228971 77228971 1 + C T rs2232506 77228972 + 77228952 77228992 41 CCTACAGCGTGCAGGCTGTCGGGGCGCCGGGCCTCCGGCAC CCTACAGCGTGCAGGCTGTTGGGGCGCCGGGCCTCCGGCAC < 41bp 0.500262732859778 0.709701617066793 NA NA prediction 0.418877768414031 Functional Gain - MON1B ENSG00000103111 CDS Human protein_coding chr16:77228972 chr16:77228971 synonymous SNV . 0 20 hm7G_associated_SNPs_29465 0 0 1 0 1 MON1B chr16:77229051 5'GT 77229051 Upstream 81bp 26930 chr2 153435434 153435434 1 + C T rs16831399 153435435 + 153435415 153435455 41 TGGTCATGTCTCATCCACACGCTGTCAATGAGATTGCACTA TGGTCATGTCTCATCCACATGCTGTCAATGAGATTGCACTA < 41bp 0.505180459075864 0.714617207683593 NA NA prediction 0.418873497215457 Functional Gain - FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153435435 chr2:153435434 synonymous SNV . 0 20 hm7G_associated_SNPs_29466 0 0 1 0 2 FMNL2 chr2:153435402 3'AG 153435402 Downstream 33bp 26931 chr2 153435434 153435434 1 + C T rs16831399 153435435 + 153435415 153435455 41 TGGTCATGTCTCATCCACACGCTGTCAATGAGATTGCACTA TGGTCATGTCTCATCCACATGCTGTCAATGAGATTGCACTA < 41bp 0.505180459075864 0.714617207683593 NA NA prediction 0.418873497215457 Functional Gain - FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153435435 chr2:153435434 synonymous SNV . 0 20 hm7G_associated_SNPs_29466 0 0 1 0 2 FMNL2 chr2:153435478 5'GT 153435478 Upstream 45bp 26932 chr16 67681025 67681025 1 + G A UCEC 67681026 + 67681006 67681046 41 ACCCTCCCACCAGGGACCTGGCCTTGAGTGTGGCTGCCCTG ACCCTCCCACCAGGGACCTAGCCTTGAGTGTGGCTGCCCTG < 41bp 0.475775093347281 0.709428338345255 NA NA prediction 0.418856676690509 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67681026 chr16:67681025 synonymous SNV . 0 20 hm7G_associated_SNPs_29468 0 0 0 0 2 CARMIL2 chr16:67681019 3'AG 67681019 Downstream 7bp 26933 chr16 67681025 67681025 1 + G A UCEC 67681026 + 67681006 67681046 41 ACCCTCCCACCAGGGACCTGGCCTTGAGTGTGGCTGCCCTG ACCCTCCCACCAGGGACCTAGCCTTGAGTGTGGCTGCCCTG < 41bp 0.475775093347281 0.709428338345255 NA NA prediction 0.418856676690509 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67681026 chr16:67681025 synonymous SNV . 0 20 hm7G_associated_SNPs_29468 0 0 0 0 2 CARMIL2 chr16:67681094 5'GT 67681094 Upstream 70bp 26934 chr4 996555 996555 1 + G A rs11934801 996556 + 996536 996576 41 GGCCGAAGTGTCGCAGGCCGGGACCGTCCTGGACAGCAACC GGCCGAAGTGTCGCAGGCCAGGACCGTCCTGGACAGCAACC < 41bp 0.573472045959381 0.782899132279002 NA NA prediction 0.418854172639243 Functional Gain - IDUA ENSG00000127415 CDS Human protein_coding chr4:996556 chr4:996555 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_29469 0 0 1 0 1 IDUA chr4:996520 3'AG 996520 Downstream 36bp 26935 chr11 64120240 64120240 1 + G A UCEC 64120241 + 64120221 64120261 41 AGCAGCTGCAGGCCCAGCGGGCCAGCGTGGAGGCACAGGAG AGCAGCTGCAGGCCCAGCGAGCCAGCGTGGAGGCACAGGAG < 41bp 0.56940432316245 0.778831343455149 NA NA prediction 0.418854040585398 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64120241 chr11:64120240 synonymous SNV . 0 20 hm7G_associated_SNPs_29470 0 0 0 0 1 CCDC88B chr11:64120216 3'AG 64120216 Downstream 25bp 26936 chr3 12560653 12560653 1 + G T STAD 12560654 + 12560634 12560674 41 ACCATTACTTTCGAAGCAAGGGCTGGGTGCCCAAAGTGGGA ACCATTACTTTCGAAGCAATGGCTGGGTGCCCAAAGTGGGA < 41bp 0.69827346928221 0.907698317723733 NA NA prediction 0.418849696883046 Functional Gain - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12560654 chr3:12560653 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_29471 0 0 1 0 2 TSEN2 chr3:12560558 3'AG 12560558 Downstream 96bp 26937 chr3 12560653 12560653 1 + G T STAD 12560654 + 12560634 12560674 41 ACCATTACTTTCGAAGCAAGGGCTGGGTGCCCAAAGTGGGA ACCATTACTTTCGAAGCAATGGCTGGGTGCCCAAAGTGGGA < 41bp 0.69827346928221 0.907698317723733 NA NA prediction 0.418849696883046 Functional Gain - TSEN2 ENSG00000154743 CDS Human protein_coding chr3:12560654 chr3:12560653 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_29471 0 0 1 0 2 TSEN2 chr3:12560696 5'GT 12560696 Upstream 44bp 26938 chr6 41754045 41754045 1 + G A COAD 41754046 + 41754026 41754066 41 CAGGCTCGAGCTGGGCCGGGGCACTGGAAGGGCAGGCATTC CAGGCTCGAGCTGGGCCGGAGCACTGGAAGGGCAGGCATTC < 41bp 0.551392503738728 0.760815872337521 NA NA prediction 0.418846737197586 Functional Gain - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41754046 chr6:41754045 synonymous SNV . 0 20 hm7G_associated_SNPs_29472 0 0 1 0 1 PRICKLE4 chr6:41754070 5'GT 41754070 Upstream 26bp 26939 chr10 85971433 85971433 1 + C T rs116594644 85971434 + 85971414 85971454 41 CAGATACAGGACCCTGGGGCGAAGTGAAATATTCCACCTAT CAGATACAGGACCCTGGGGTGAAGTGAAATATTCCACCTAT < 41bp 0.491304940166469 0.709422872977695 NA NA prediction 0.41884574595539 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85971434 chr10:85971433 synonymous SNV . 0 20 hm7G_associated_SNPs_29473 2 0 0 0 2 CDHR1 chr10:85971404 3'AG 85971404 Downstream 30bp 26940 chr10 85971433 85971433 1 + C T rs116594644 85971434 + 85971414 85971454 41 CAGATACAGGACCCTGGGGCGAAGTGAAATATTCCACCTAT CAGATACAGGACCCTGGGGTGAAGTGAAATATTCCACCTAT < 41bp 0.491304940166469 0.709422872977695 NA NA prediction 0.41884574595539 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85971434 chr10:85971433 synonymous SNV . 0 20 hm7G_associated_SNPs_29473 2 0 0 0 2 CDHR1 chr10:85971471 5'GT 85971471 Upstream 39bp 26941 chr17 7611965 7611965 1 + G A rs115591606 7611966 + 7611946 7611986 41 TCTCCAGGTCCCCGAGGAGGGGCTGTCCCCCGAAAACCTGT TCTCCAGGTCCCCGAGGAGAGGCTGTCCCCCGAAAACCTGT < 41bp 0.565231884037854 0.774644477153904 NA NA prediction 0.418825186232101 Functional Gain - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7611966 chr17:7611965 nonsynonymous SNV 0.955 0 20 hm7G_associated_SNPs_29474 0 0 0 0 2 EFNB3 chr17:7611953 3'AG 7611953 Downstream 13bp 26942 chr17 7611965 7611965 1 + G A rs115591606 7611966 + 7611946 7611986 41 TCTCCAGGTCCCCGAGGAGGGGCTGTCCCCCGAAAACCTGT TCTCCAGGTCCCCGAGGAGAGGCTGTCCCCCGAAAACCTGT < 41bp 0.565231884037854 0.774644477153904 NA NA prediction 0.418825186232101 Functional Gain - EFNB3 ENSG00000108947 CDS Human protein_coding chr17:7611966 chr17:7611965 nonsynonymous SNV 0.955 0 20 hm7G_associated_SNPs_29474 0 0 0 0 2 EFNB3 chr17:7612057 5'GT 7612057 Upstream 93bp 26943 chr20 55012267 55012267 1 + C T UCEC 55012268 + 55012248 55012288 41 ACTGCCCTGACTGCTCTGACGAGCTGGCTTTCAGCAGAGGG ACTGCCCTGACTGCTCTGATGAGCTGGCTTTCAGCAGAGGG < 41bp 0.519921042269565 0.729332728019832 NA NA prediction 0.418823371500534 Functional Gain - CASS4 ENSG00000087589 CDS Human protein_coding chr20:55012268 chr20:55012267 synonymous SNV . 0 20 hm7G_associated_SNPs_29475 0 0 0 0 1 CASS4 chr20:55012220 3'AG 55012220 Downstream 48bp 26944 chr18 29046572 29046572 1 + C T GBM 29046573 + 29046553 29046593 41 ATTGTCCAACAGCTGTCCTCGAAAAAGATGCAGTTTGCAGT ATTGTCCAACAGCTGTCCTTGAAAAAGATGCAGTTTGCAGT < 41bp 0.504069260444966 0.713478515811033 NA NA prediction 0.418818510732134 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29046573 chr18:29046572 synonymous SNV . 0 20 hm7G_associated_SNPs_29476 0 0 0 0 1 DSG3 chr18:29046493 3'AG 29046493 Downstream 80bp 26945 chr9 135102365 135102365 1 + G A SKCM 135102366 + 135102346 135102386 41 TCCGCACCCGGTCCTGGCGGGCCGGCTCCTACCTGCCGCTG TCCGCACCCGGTCCTGGCGAGCCGGCTCCTACCTGCCGCTG < 41bp 0.570280075405327 0.779689284912515 NA NA prediction 0.418818419014377 Functional Gain - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135102366 chr9:135102365 synonymous SNV . 0 20 hm7G_associated_SNPs_29477 0 0 0 0 1 NTNG2 chr9:135102408 5'GT 135102408 Upstream 44bp 26946 chr15 73994903 73994903 1 + C T rs571386373 73994904 + 73994884 73994924 41 TCGTGAGCATCCGGGATTTCGGCAGCGCTGCCGTCAGCCTG TCGTGAGCATCCGGGATTTTGGCAGCGCTGCCGTCAGCCTG < 41bp 0.508630988630427 0.718038793430291 NA NA prediction 0.418815609599729 Functional Gain - CD276 ENSG00000103855 CDS Human protein_coding chr15:73994904 chr15:73994903 synonymous SNV . 0 20 hm7G_associated_SNPs_29478 0 0 0 0 1 CD276 chr15:73994934 5'GT 73994934 Upstream 32bp 26947 chr1 159141624 159141624 1 + G A rs111767231 159141625 + 159141605 159141645 41 GCTGCTGGGCGCCCGGCGGGGCCAACCTCTCCCAGGACGGT GCTGCTGGGCGCCCGGCGGAGCCAACCTCTCCCAGGACGGT < 41bp 0.532745200878269 0.742150283714512 NA NA prediction 0.418810165672486 Functional Gain - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159141625 chr1:159141624 synonymous SNV . 0 20 hm7G_associated_SNPs_29481 0 0 0 0 1 CADM3 chr1:159141643 5'GT 159141643 Upstream 20bp 26948 chr11 66372848 66372848 1 + C T READ 66372849 + 66372829 66372869 41 ATGTCCGTGCTGATGCTGACGGCCGCGCCATCTTCAGAATG ATGTCCGTGCTGATGCTGATGGCCGCGCCATCTTCAGAATG < 41bp 0.528155287599777 0.73756028506367 NA NA prediction 0.418809994927786 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66372849 chr11:66372848 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29482 0 0 1 0 2 CCS chr11:66372810 3'AG 66372810 Downstream 39bp 26949 chr11 66372848 66372848 1 + C T READ 66372849 + 66372829 66372869 41 ATGTCCGTGCTGATGCTGACGGCCGCGCCATCTTCAGAATG ATGTCCGTGCTGATGCTGATGGCCGCGCCATCTTCAGAATG < 41bp 0.528155287599777 0.73756028506367 NA NA prediction 0.418809994927786 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66372849 chr11:66372848 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29482 0 0 1 0 2 CCS chr11:66372887 5'GT 66372887 Upstream 40bp 26950 chr2 206610475 206610475 1 + C T COAD 206610476 + 206610456 206610496 41 CTCTCTCCCTGCAGCTGTTCGAAGGGAACATGCACTATGAC CTCTCTCCCTGCAGCTGTTTGAAGGGAACATGCACTATGAC < 41bp 0.506278742368641 0.715681568178143 NA NA prediction 0.418805651619005 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206610476 chr2:206610475 synonymous SNV . 0 20 hm7G_associated_SNPs_29483 0 0 0 0 1 NRP2 chr2:206610470 3'AG 206610470 Downstream 6bp 26951 chr17 59480470 59480470 1 + C T UCEC 59480471 + 59480451 59480491 41 GCCGCGCTTCCACATAGTGCGAGCCAACGACATCCTGAAGC GCCGCGCTTCCACATAGTGTGAGCCAACGACATCCTGAAGC < 41bp 0.501984280156855 0.711386454961859 NA NA prediction 0.418804349610009 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59480471 chr17:59480470 stopgain 0.993 1 20 hm7G_associated_SNPs_29484 0 0 0 0 2 TBX2 chr17:59480422 3'AG 59480422 Downstream 49bp 26952 chr17 59480470 59480470 1 + C T UCEC 59480471 + 59480451 59480491 41 GCCGCGCTTCCACATAGTGCGAGCCAACGACATCCTGAAGC GCCGCGCTTCCACATAGTGTGAGCCAACGACATCCTGAAGC < 41bp 0.501984280156855 0.711386454961859 NA NA prediction 0.418804349610009 Functional Gain - TBX2 ENSG00000121068 CDS Human protein_coding chr17:59480471 chr17:59480470 stopgain 0.993 1 20 hm7G_associated_SNPs_29484 0 0 0 0 2 TBX2 chr17:59480568 5'GT 59480568 Upstream 99bp 26953 chr11 66325563 66325563 1 + G A rs35977173 66325564 + 66325544 66325584 41 ATGAGGACTGGCTGCTCTCGGAGATCCGGCGCCTGCAGCGA ATGAGGACTGGCTGCTCTCAGAGATCCGGCGCCTGCAGCGA < 41bp 0.539451303402415 0.748851384911163 NA NA prediction 0.418800163017496 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325564 chr11:66325563 unknown . 0 20 hm7G_associated_SNPs_29486 0 0 0 0 2 ACTN3 chr11:66325498 3'AG 66325498 Downstream 66bp 26954 chr11 66325563 66325563 1 + G A rs35977173 66325564 + 66325544 66325584 41 ATGAGGACTGGCTGCTCTCGGAGATCCGGCGCCTGCAGCGA ATGAGGACTGGCTGCTCTCAGAGATCCGGCGCCTGCAGCGA < 41bp 0.539451303402415 0.748851384911163 NA NA prediction 0.418800163017496 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325564 chr11:66325563 unknown . 0 20 hm7G_associated_SNPs_29486 0 0 0 0 2 ACTN3 chr11:66325645 5'GT 66325645 Upstream 83bp 26955 chr17 46053346 46053346 1 + C T PCPG 46053347 + 46053327 46053367 41 TGGTGGAACGACCCCACCTCGAGGAGCTTCCTGAGCAGGTG TGGTGGAACGACCCCACCTTGAGGAGCTTCCTGAGCAGGTG < 41bp 0.505386921089791 0.714786072620811 NA NA prediction 0.41879830306204 Functional Gain - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46053347 chr17:46053346 synonymous SNV . 0 20 hm7G_associated_SNPs_29487 0 0 1 0 1 CDK5RAP3 chr17:46053379 5'GT 46053379 Upstream 34bp 26956 chr19 7916645 7916645 1 + G A SKCM 7916646 + 7916626 7916666 41 GATGCAGCTGGACATGGAGGGGATGTCCCAGGTGGGCCGGG GATGCAGCTGGACATGGAGAGGATGTCCCAGGTGGGCCGGG < 41bp 0.563332551605571 0.772731581707842 NA NA prediction 0.418798060204541 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7916646 chr19:7916645 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_29488 0 0 1 0 2 EVI5L chr19:7916567 3'AG 7916567 Downstream 79bp 26957 chr19 7916645 7916645 1 + G A SKCM 7916646 + 7916626 7916666 41 GATGCAGCTGGACATGGAGGGGATGTCCCAGGTGGGCCGGG GATGCAGCTGGACATGGAGAGGATGTCCCAGGTGGGCCGGG < 41bp 0.563332551605571 0.772731581707842 NA NA prediction 0.418798060204541 Functional Gain - EVI5L ENSG00000142459 CDS Human protein_coding chr19:7916646 chr19:7916645 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_29488 0 0 1 0 2 EVI5L chr19:7916656 5'GT 7916656 Upstream 12bp 26958 chr9 130489287 130489287 1 + G A COAD 130489288 + 130489268 130489308 41 ACCTCTTCCCGGGCATGTCGGTGGAGGAGGTGCTTAGCACC ACCTCTTCCCGGGCATGTCAGTGGAGGAGGTGCTTAGCACC < 41bp 0.518668968196703 0.728065805222725 NA NA prediction 0.418793674052043 Functional Gain - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130489288 chr9:130489287 synonymous SNV . 0 20 hm7G_associated_SNPs_29489 0 0 0 0 1 TTC16 chr9:130489249 3'AG 130489249 Downstream 39bp 26959 chr16 50763758 50763758 1 + G T LUSC 50763759 + 50763739 50763779 41 AACTGCATCACCTACCTAGGGGCAGAAGCCCTCCTGCAGGC AACTGCATCACCTACCTAGTGGCAGAAGCCCTCCTGCAGGC < 41bp 0.374809158937476 0.709394751872513 NA NA prediction 0.418789503745025 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50763759 chr16:50763758 nonsynonymous SNV 0.907 4 20 hm7G_associated_SNPs_29490 0 0 0 0 2 NOD2 chr16:50763729 3'AG 50763729 Downstream 30bp 26960 chr16 50763758 50763758 1 + G T LUSC 50763759 + 50763739 50763779 41 AACTGCATCACCTACCTAGGGGCAGAAGCCCTCCTGCAGGC AACTGCATCACCTACCTAGTGGCAGAAGCCCTCCTGCAGGC < 41bp 0.374809158937476 0.709394751872513 NA NA prediction 0.418789503745025 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50763759 chr16:50763758 nonsynonymous SNV 0.907 4 20 hm7G_associated_SNPs_29490 0 0 0 0 2 NOD2 chr16:50763812 5'GT 50763812 Upstream 55bp 26961 chr12 6948229 6948229 1 + G A rs182798880 6948230 + 6948210 6948250 41 GTGTCGAGAATCCCCATGGGGTGTGGGCCGTGACTCGGGGA GTGTCGAGAATCCCCATGGAGTGTGGGCCGTGACTCGGGGA < 41bp 0.494608943281045 0.709392300953127 NA NA prediction 0.418784601906254 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6948230 chr12:6948229 synonymous SNV . 0 20 hm7G_associated_SNPs_29491 0 0 1 0 2 P3H3 chr12:6948164 3'AG 6948164 Downstream 66bp 26962 chr12 6948229 6948229 1 + G A rs182798880 6948230 + 6948210 6948250 41 GTGTCGAGAATCCCCATGGGGTGTGGGCCGTGACTCGGGGA GTGTCGAGAATCCCCATGGAGTGTGGGCCGTGACTCGGGGA < 41bp 0.494608943281045 0.709392300953127 NA NA prediction 0.418784601906254 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6948230 chr12:6948229 synonymous SNV . 0 20 hm7G_associated_SNPs_29491 0 0 1 0 2 P3H3 chr12:6948304 5'GT 6948304 Upstream 76bp 26963 chr19 2399178 2399178 1 + G A rs376473008 2399179 + 2399159 2399199 41 CCTATGGCACAATTGTGTCGGCTGAGCTCACAGGTGAGTGG CCTATGGCACAATTGTGTCAGCTGAGCTCACAGGTGAGTGG < 41bp 0.490370587217861 0.709388891064363 NA NA prediction 0.418777782128726 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2399179 chr19:2399178 synonymous SNV . 0 20 hm7G_associated_SNPs_29493 0 0 0 0 1 TMPRSS9 chr19:2399191 5'GT 2399191 Upstream 14bp 26964 chr16 2579050 2579050 1 + G A rs56015787 2579051 + 2579031 2579071 41 TGCACCCCGCCCAGTTGCTGGGGCTGGAGAAGAGTAAGGGG TGCACCCCGCCCAGTTGCTAGGGCTGGAGAAGAGTAAGGGG < 41bp 0.565326617354944 0.774715081785702 NA NA prediction 0.418776928861515 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2579051 chr16:2579050 synonymous SNV . 0 20 hm7G_associated_SNPs_29494 0 0 1 0 2 AMDHD2 chr16:2578995 3'AG 2578995 Downstream 56bp 26965 chr16 2579050 2579050 1 + G A rs56015787 2579051 + 2579031 2579071 41 TGCACCCCGCCCAGTTGCTGGGGCTGGAGAAGAGTAAGGGG TGCACCCCGCCCAGTTGCTAGGGCTGGAGAAGAGTAAGGGG < 41bp 0.565326617354944 0.774715081785702 NA NA prediction 0.418776928861515 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2579051 chr16:2579050 synonymous SNV . 0 20 hm7G_associated_SNPs_29494 0 0 1 0 2 AMDHD2 chr16:2579096 5'GT 2579096 Upstream 47bp 26966 chr8 71593552 71593552 1 + G T UCEC 71593553 + 71593533 71593573 41 ACTTCATTGCTTGCAAGGAGGAGTTTTTACAAGGTGAGCAT ACTTCATTGCTTGCAAGGATGAGTTTTTACAAGGTGAGCAT < 41bp 0.603986355715273 0.813367695128764 NA NA prediction 0.418762678826983 Functional Gain - XKR9 ENSG00000221947 CDS Human protein_coding chr8:71593553 chr8:71593552 stopgain 0.998 1 20 hm7G_associated_SNPs_29497 0 0 0 0 1 XKR9 chr8:71593565 5'GT 71593565 Upstream 14bp 26967 chrX 47086598 47086598 1 + C T UCEC 47086599 + 47086579 47086619 41 GACTTGATAGCGACGGGGCCGACCTCCTCACCAAGCTGTTG GACTTGATAGCGACGGGGCTGACCTCCTCACCAAGCTGTTG < 41bp 0.502339328807209 0.711717081172324 NA NA prediction 0.418755504730229 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47086599 chrX:47086598 synonymous SNV . 0 20 hm7G_associated_SNPs_29498 0 0 1 0 3 CDK16 chrX:47086559 3'AG 47086559 Downstream 40bp 26968 chrX 47086598 47086598 1 + C T UCEC 47086599 + 47086579 47086619 41 GACTTGATAGCGACGGGGCCGACCTCCTCACCAAGCTGTTG GACTTGATAGCGACGGGGCTGACCTCCTCACCAAGCTGTTG < 41bp 0.502339328807209 0.711717081172324 NA NA prediction 0.418755504730229 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47086599 chrX:47086598 synonymous SNV . 0 20 hm7G_associated_SNPs_29498 0 0 1 0 3 CDK16 chrX:47086580 3'AG 47086580 Downstream 19bp 26969 chrX 47086598 47086598 1 + C T UCEC 47086599 + 47086579 47086619 41 GACTTGATAGCGACGGGGCCGACCTCCTCACCAAGCTGTTG GACTTGATAGCGACGGGGCTGACCTCCTCACCAAGCTGTTG < 41bp 0.502339328807209 0.711717081172324 NA NA prediction 0.418755504730229 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47086599 chrX:47086598 synonymous SNV . 0 20 hm7G_associated_SNPs_29498 0 0 1 0 3 CDK16 chrX:47086622 5'GT 47086622 Upstream 25bp 26970 chr4 160251634 160251634 1 + C T UCEC 160251635 + 160251615 160251655 41 TTGGAGTGGTTTAATGACCCGAGCCTCAGGGATAAGGTTGG TTGGAGTGGTTTAATGACCTGAGCCTCAGGGATAAGGTTGG < 41bp 0.501644624714255 0.711021568284501 NA NA prediction 0.418753887140491 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160251635 chr4:160251634 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29499 0 0 1 0 1 RAPGEF2 chr4:160251650 5'GT 160251650 Upstream 17bp 26971 chr14 73732153 73732153 1 + C T GBM 73732154 + 73732134 73732174 41 TCCGGATGACCTGCCGTGCCGAAGGCTTCCCGCCCCCAGCC TCCGGATGACCTGCCGTGCTGAAGGCTTCCCGCCCCCAGCC < 41bp 0.495529818847759 0.709376646377343 NA NA prediction 0.418753292754686 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73732154 chr14:73732153 synonymous SNV . 0 20 hm7G_associated_SNPs_29500 0 0 1 0 2 PAPLN chr14:73732078 3'AG 73732078 Downstream 76bp 26972 chr14 73732153 73732153 1 + C T GBM 73732154 + 73732134 73732174 41 TCCGGATGACCTGCCGTGCCGAAGGCTTCCCGCCCCCAGCC TCCGGATGACCTGCCGTGCTGAAGGCTTCCCGCCCCCAGCC < 41bp 0.495529818847759 0.709376646377343 NA NA prediction 0.418753292754686 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73732154 chr14:73732153 synonymous SNV . 0 20 hm7G_associated_SNPs_29500 0 0 1 0 2 PAPLN chr14:73732215 5'GT 73732215 Upstream 63bp 26973 chr16 70170209 70170209 1 + C T UCEC 70170210 + 70170190 70170230 41 ACATGAGGTGCATCATGGGCGAGTCTCCTGCAGTGCAGGGC ACATGAGGTGCATCATGGGTGAGTCTCCTGCAGTGCAGGGC < 41bp 0.492609901623497 0.709370094502802 NA NA prediction 0.418740189005603 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70170210 chr16:70170209 synonymous SNV . 0 20 hm7G_associated_SNPs_29503 0 0 1 0 1 PDPR chr16:70170289 5'GT 70170289 Upstream 81bp 26974 chr1 43774758 43774758 1 + C T UCEC 43774759 + 43774739 43774779 41 AGGGAACCCCTTCCCCGTGCGGGGCAGCATAGAGCTACGCA AGGGAACCCCTTCCCCGTGTGGGGCAGCATAGAGCTACGCA < 41bp 0.510403727331639 0.719769260605013 NA NA prediction 0.418731066546748 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43774759 chr1:43774758 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_29504 0 0 0 0 1 TIE1 chr1:43774802 5'GT 43774802 Upstream 45bp 26975 chr17 25935008 25935008 1 + C T UCEC 25935009 + 25934989 25935029 41 TCTCTGGACATCAACAAGACGAGGCAAATCGCTCAGGAGAT TCTCTGGACATCAACAAGATGAGGCAAATCGCTCAGGAGAT < 41bp 0.533283017337632 0.742647384165795 NA NA prediction 0.418728733656325 Functional Gain - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25935009 chr17:25935008 nonsynonymous SNV 0.933 3 20 hm7G_associated_SNPs_29506 0 0 1 0 2 KSR1 chr17:25934940 3'AG 25934940 Downstream 69bp 26976 chr17 25935008 25935008 1 + C T UCEC 25935009 + 25934989 25935029 41 TCTCTGGACATCAACAAGACGAGGCAAATCGCTCAGGAGAT TCTCTGGACATCAACAAGATGAGGCAAATCGCTCAGGAGAT < 41bp 0.533283017337632 0.742647384165795 NA NA prediction 0.418728733656325 Functional Gain - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25935009 chr17:25935008 nonsynonymous SNV 0.933 3 20 hm7G_associated_SNPs_29506 0 0 1 0 2 KSR1 chr17:25935036 5'GT 25935036 Upstream 29bp 26977 chr16 84695238 84695238 1 + G A COAD 84695239 + 84695219 84695259 41 ACTTCGTGTACATCTCGGGGGGCCACGACTACCAAATTGGC ACTTCGTGTACATCTCGGGAGGCCACGACTACCAAATTGGC < 41bp 0.509970224475668 0.719333747823062 NA NA prediction 0.418727046694787 Functional Gain - KLHL36 ENSG00000135686 CDS Human protein_coding chr16:84695239 chr16:84695238 synonymous SNV . 0 20 hm7G_associated_SNPs_29507 0 0 1 0 1 KLHL36 chr16:84695184 3'AG 84695184 Downstream 55bp 26978 chr10 135051643 135051643 1 + G A rs537711467 135051644 + 135051624 135051664 41 CCTCAAATCTGCCTGCGCCGGAGAGGACCATGGCCGGTAGG CCTCAAATCTGCCTGCGCCAGAGAGGACCATGGCCGGTAGG < 41bp 0.501633235579312 0.710994365858284 NA NA prediction 0.418722260557945 Functional Gain - VENTX ENSG00000151650 CDS Human protein_coding chr10:135051644 chr10:135051643 synonymous SNV . 0 20 hm7G_associated_SNPs_29508 0 0 0 0 1 VENTX chr10:135051659 5'GT 135051659 Upstream 17bp 26979 chr19 50208489 50208489 1 + C T HNSC 50208490 + 50208470 50208510 41 GACTTTGCTGATGGGAATGCGCCCCTTATGCTCTGCCCAGT GACTTTGCTGATGGGAATGTGCCCCTTATGCTCTGCCCAGT < 41bp 0.522680600212987 0.732041140636602 NA NA prediction 0.418721080847229 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208490 chr19:50208489 nonsynonymous SNV 0.911 5 20 hm7G_associated_SNPs_29509 0 0 0 0 2 CPT1C chr19:50208471 3'AG 50208471 Downstream 19bp 26980 chr19 50208489 50208489 1 + C T HNSC 50208490 + 50208470 50208510 41 GACTTTGCTGATGGGAATGCGCCCCTTATGCTCTGCCCAGT GACTTTGCTGATGGGAATGTGCCCCTTATGCTCTGCCCAGT < 41bp 0.522680600212987 0.732041140636602 NA NA prediction 0.418721080847229 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208490 chr19:50208489 nonsynonymous SNV 0.911 5 20 hm7G_associated_SNPs_29509 0 0 0 0 2 CPT1C chr19:50208555 5'GT 50208555 Upstream 67bp 26981 chr5 68830632 68830632 1 + C T rs372766137 68830633 + 68830613 68830653 41 TGGCAAAGTGAATGACAAGCGGTTTTATCCAGAGTCTTCCT TGGCAAAGTGAATGACAAGTGGTTTTATCCAGAGTCTTCCT < 41bp 0.503841139826821 0.713197127107077 NA NA prediction 0.418711974560512 Functional Gain - OCLN ENSG00000197822 CDS Human protein_coding chr5:68830633 chr5:68830632 nonsynonymous SNV 0.688 2 20 hm7G_associated_SNPs_29511 0 0 0 0 1 OCLN chr5:68830666 5'GT 68830666 Upstream 35bp 26982 chr16 67292264 67292264 1 + C T PAAD 67292265 + 67292245 67292285 41 CCTGAGTCAGCTGCTGATGCGACGATCAGCCTACCGCATCC CCTGAGTCAGCTGCTGATGTGACGATCAGCCTACCGCATCC < 41bp 0.525517412021447 0.734869678505736 NA NA prediction 0.418704532968578 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67292265 chr16:67292264 stopgain 1.000 1 20 hm7G_associated_SNPs_29513 0 0 0 0 2 SLC9A5 chr16:67292221 3'AG 67292221 Downstream 44bp 26983 chr16 67292264 67292264 1 + C T PAAD 67292265 + 67292245 67292285 41 CCTGAGTCAGCTGCTGATGCGACGATCAGCCTACCGCATCC CCTGAGTCAGCTGCTGATGTGACGATCAGCCTACCGCATCC < 41bp 0.525517412021447 0.734869678505736 NA NA prediction 0.418704532968578 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67292265 chr16:67292264 stopgain 1.000 1 20 hm7G_associated_SNPs_29513 0 0 0 0 2 SLC9A5 chr16:67292350 5'GT 67292350 Upstream 87bp 26984 chr12 113400697 113400697 1 + C T SKCM 113400698 + 113400678 113400718 41 GCACCTTCTTGGCCAGCTTCGAAAACCCAGGTGAAGACCCG GCACCTTCTTGGCCAGCTTTGAAAACCCAGGTGAAGACCCG < 41bp 0.5076815215527 0.717033348603222 NA NA prediction 0.418703654101043 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113400698 chr12:113400697 stopgain 0.026 0 20 hm7G_associated_SNPs_29514 0 0 0 0 1 OAS3 chr12:113400707 5'GT 113400707 Upstream 11bp 26985 chr9 134314441 134314441 1 + C T CESC 134314442 + 134314422 134314462 41 ATGGAAAGCCAGTAGGACACGAAGGTGGTAAGTGCGCACGT ATGGAAAGCCAGTAGGACATGAAGGTGGTAAGTGCGCACGT < 41bp 0.501087543260831 0.710438316805256 NA NA prediction 0.418701547088849 Functional Gain - PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134314442 chr9:134314441 synonymous SNV . 0 20 hm7G_associated_SNPs_29516 0 0 1 0 2 PRRC2B chr9:134314376 3'AG 134314376 Downstream 66bp 26986 chr9 134314441 134314441 1 + C T CESC 134314442 + 134314422 134314462 41 ATGGAAAGCCAGTAGGACACGAAGGTGGTAAGTGCGCACGT ATGGAAAGCCAGTAGGACATGAAGGTGGTAAGTGCGCACGT < 41bp 0.501087543260831 0.710438316805256 NA NA prediction 0.418701547088849 Functional Gain - PRRC2B ENSG00000130723 CDS Human protein_coding chr9:134314442 chr9:134314441 synonymous SNV . 0 20 hm7G_associated_SNPs_29516 0 0 1 0 2 PRRC2B chr9:134314448 5'GT 134314448 Upstream 8bp 26987 chr16 23691507 23691507 1 + C T LUAD 23691508 + 23691488 23691528 41 CCAGTACCTGCACCGAAACCGAGTTATTCATCGAGACCTCA CCAGTACCTGCACCGAAACTGAGTTATTCATCGAGACCTCA < 41bp 0.517973799265237 0.727324173984593 NA NA prediction 0.418700749438712 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23691508 chr16:23691507 stopgain 0.987 1 20 hm7G_associated_SNPs_29517 0 0 1 0 1 PLK1 chr16:23691573 5'GT 23691573 Upstream 67bp 26988 chr11 75438523 75438523 1 + C T STAD 75438524 + 75438504 75438544 41 CCCTCTCGGAACTACATTGCGGGCTTCCACCCCCATGGAGT CCCTCTCGGAACTACATTGTGGGCTTCCACCCCCATGGAGT < 41bp 0.511514654211454 0.72086492345407 NA NA prediction 0.418700538485234 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75438524 chr11:75438523 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_29518 0 0 0 0 1 MOGAT2 chr11:75438480 3'AG 75438480 Downstream 44bp 26989 chr16 626145 626145 1 + C T ESCA 626146 + 626126 626166 41 CCTTCCAGGAAGGCCAACACGGTGGCCTCTGTGCTGCTGGA CCTTCCAGGAAGGCCAACATGGTGGCCTCTGTGCTGCTGGA < 41bp 0.50040166496652 0.709747744637012 NA NA prediction 0.418692159340984 Functional Gain - PIGQ ENSG00000007541 CDS Human protein_coding chr16:626146 chr16:626145 nonsynonymous SNV 0.283 0 20 hm7G_associated_SNPs_29521 0 0 1 0 1 PIGQ chr16:626134 3'AG 626134 Downstream 12bp 26990 chr6 28253366 28253366 1 + G T LUSC 28253367 + 28253347 28253387 41 GACAGGACATGCACCCAATGGTGGCAGAATATCAAGGAGTC GACAGGACATGCACCCAATTGTGGCAGAATATCAAGGAGTC < 41bp 0.366647337308526 0.709345038537062 NA NA prediction 0.418690077074124 Functional Gain - PGBD1 ENSG00000137338 CDS Human protein_coding chr6:28253367 chr6:28253366 nonsynonymous SNV 0.174 0 20 hm7G_associated_SNPs_29522 0 0 1 0 1 PGBD1 chr6:28253328 3'AG 28253328 Downstream 39bp 26991 chr2 75116456 75116456 1 + G T UCEC 75116457 + 75116437 75116477 41 ACGACAGCATCATTGTTAAGGAGGTGTGCACTGTGGTGGCC ACGACAGCATCATTGTTAATGAGGTGTGCACTGTGGTGGCC < 41bp 0.356618347980766 0.709341513901584 NA NA prediction 0.418683027803167 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75116457 chr2:75116456 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_29523 0 0 1 0 1 HK2 chr2:75116372 3'AG 75116372 Downstream 85bp 26992 chr7 150171646 150171646 1 + G T UCEC 150171647 + 150171627 150171667 41 ACAGGAGAAGAAGAGCAAAGGCAGGCGGACGAGCTCCTGGA ACAGGAGAAGAAGAGCAAATGCAGGCGGACGAGCTCCTGGA < 41bp 0.69405627010628 0.903397579096523 NA NA prediction 0.418682617980485 Functional Gain - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150171647 chr7:150171646 nonsynonymous SNV 0.009 2 20 hm7G_associated_SNPs_29524 0 0 0 0 1 GIMAP8 chr7:150171726 5'GT 150171726 Upstream 81bp 26993 chr8 68956759 68956759 1 + C T CESC 68956760 + 68956740 68956780 41 GGCATCTACAGATGGACATCGGTACCTTTTTCGTGGCCGGA GGCATCTACAGATGGACATTGGTACCTTTTTCGTGGCCGGA < 41bp 0.49664519381324 0.709338349463378 NA NA prediction 0.418676698926757 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68956760 chr8:68956759 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29525 0 0 0 0 2 PREX2 chr8:68956722 3'AG 68956722 Downstream 38bp 26994 chr8 68956759 68956759 1 + C T CESC 68956760 + 68956740 68956780 41 GGCATCTACAGATGGACATCGGTACCTTTTTCGTGGCCGGA GGCATCTACAGATGGACATTGGTACCTTTTTCGTGGCCGGA < 41bp 0.49664519381324 0.709338349463378 NA NA prediction 0.418676698926757 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68956760 chr8:68956759 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29525 0 0 0 0 2 PREX2 chr8:68956825 5'GT 68956825 Upstream 67bp 26995 chr11 10515022 10515022 1 + C T CESC 10515023 + 10515003 10515043 41 GGGCCGGAAGATCACCCTGCGGCAGGTGTTTGACGGCCTGC GGGCCGGAAGATCACCCTGTGGCAGGTGTTTGACGGCCTGC < 41bp 0.531288167156209 0.740621551796225 NA NA prediction 0.418666769280031 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10515023 chr11:10515022 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_29526 0 0 0 0 1 AMPD3 chr11:10515090 5'GT 10515090 Upstream 69bp 26996 chr13 25264762 25264762 1 + G A COAD 25264763 + 25264743 25264783 41 TGGATAACTCATCTCTCACGGGGGAGTCTGAGCCCCAGCCC TGGATAACTCATCTCTCACAGGGGAGTCTGAGCCCCAGCCC < 41bp 0.493399213702071 0.709332702642603 NA NA prediction 0.418665405285205 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264763 chr13:25264762 synonymous SNV . 0 20 hm7G_associated_SNPs_29527 0 0 0 0 2 ATP12A chr13:25264742 3'AG 25264742 Downstream 21bp 26997 chr13 25264762 25264762 1 + G A COAD 25264763 + 25264743 25264783 41 TGGATAACTCATCTCTCACGGGGGAGTCTGAGCCCCAGCCC TGGATAACTCATCTCTCACAGGGGAGTCTGAGCCCCAGCCC < 41bp 0.493399213702071 0.709332702642603 NA NA prediction 0.418665405285205 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264763 chr13:25264762 synonymous SNV . 0 20 hm7G_associated_SNPs_29527 0 0 0 0 2 ATP12A chr13:25264859 5'GT 25264859 Upstream 98bp 26998 chr1 26881142 26881142 1 + C T SKCM 26881143 + 26881123 26881163 41 AGAAGGCCTATTCTTTCTGCGGGACAGTGGAGTACATGGCC AGAAGGCCTATTCTTTCTGTGGGACAGTGGAGTACATGGCC < 41bp 0.516228984050096 0.725556002234639 NA NA prediction 0.418654036369087 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26881143 chr1:26881142 synonymous SNV . 0 20 hm7G_associated_SNPs_29528 0 0 1 0 2 RPS6KA1 chr1:26881087 3'AG 26881087 Downstream 56bp 26999 chr1 26881142 26881142 1 + C T SKCM 26881143 + 26881123 26881163 41 AGAAGGCCTATTCTTTCTGCGGGACAGTGGAGTACATGGCC AGAAGGCCTATTCTTTCTGTGGGACAGTGGAGTACATGGCC < 41bp 0.516228984050096 0.725556002234639 NA NA prediction 0.418654036369087 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26881143 chr1:26881142 synonymous SNV . 0 20 hm7G_associated_SNPs_29528 0 0 1 0 2 RPS6KA1 chr1:26881229 5'GT 26881229 Upstream 88bp 27000 chr19 45555355 45555355 1 + G A CESC 45555356 + 45555336 45555376 41 ACCCAGCCCAGTTCCTGCAGGTACATGGCCGAGCTTGCAAG ACCCAGCCCAGTTCCTGCAAGTACATGGCCGAGCTTGCAAG < 41bp 0.548337674820563 0.757663639244503 NA NA prediction 0.418651928847878 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45555356 chr19:45555355 synonymous SNV . 0 20 hm7G_associated_SNPs_29530 0 0 1 0 3 CLASRP chr19:45555329 3'AG 45555329 Downstream 27bp 27001 chr19 45555355 45555355 1 + G A CESC 45555356 + 45555336 45555376 41 ACCCAGCCCAGTTCCTGCAGGTACATGGCCGAGCTTGCAAG ACCCAGCCCAGTTCCTGCAAGTACATGGCCGAGCTTGCAAG < 41bp 0.548337674820563 0.757663639244503 NA NA prediction 0.418651928847878 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45555356 chr19:45555355 synonymous SNV . 0 20 hm7G_associated_SNPs_29530 0 0 1 0 3 CLASRP chr19:45555355 5'GT 45555355 Upstream 1bp 27002 chr19 45555355 45555355 1 + G A CESC 45555356 + 45555336 45555376 41 ACCCAGCCCAGTTCCTGCAGGTACATGGCCGAGCTTGCAAG ACCCAGCCCAGTTCCTGCAAGTACATGGCCGAGCTTGCAAG < 41bp 0.548337674820563 0.757663639244503 NA NA prediction 0.418651928847878 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45555356 chr19:45555355 synonymous SNV . 0 20 hm7G_associated_SNPs_29530 0 0 1 0 3 CLASRP chr19:45555426 5'GT 45555426 Upstream 72bp 27003 chr10 104569772 104569772 1 + C T UCEC 104569773 + 104569753 104569793 41 AATCAACCTGATCGCTTACCGAGAAGCCCACAATTACTCAG AATCAACCTGATCGCTTACTGAGAAGCCCACAATTACTCAG < 41bp 0.498545772659132 0.709324601834953 NA NA prediction 0.418649203669906 Functional Gain - WBP1L ENSG00000166272 CDS Human protein_coding chr10:104569773 chr10:104569772 stopgain 0.998 1 20 hm7G_associated_SNPs_29531 0 0 1 0 1 WBP1L chr10:104569811 5'GT 104569811 Upstream 40bp 27004 chr1 24932130 24932130 1 + G A SKCM 24932131 + 24932111 24932151 41 GGCGGGAACTAGAGCCCAAGGGCCCCAAGCCAACCGCCCCT GGCGGGAACTAGAGCCCAAAGGCCCCAAGCCAACCGCCCCT < 41bp 0.537500582157158 0.746823417275836 NA NA prediction 0.418645670237357 Functional Gain - NCMAP ENSG00000184454 CDS Human protein_coding chr1:24932131 chr1:24932130 synonymous SNV . 0 20 hm7G_associated_SNPs_29532 0 0 0 0 1 NCMAP chr1:24932097 3'AG 24932097 Downstream 34bp 27005 chr9 71863050 71863050 1 + C T PAAD 71863051 + 71863031 71863071 41 ACACGGACGGTGAAGGAGGCGCCTACACTGACAATGAGCTG ACACGGACGGTGAAGGAGGTGCCTACACTGACAATGAGCTG < 41bp 0.494919195561574 0.709322379206277 NA NA prediction 0.418644758412553 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71863051 chr9:71863050 synonymous SNV . 0 20 hm7G_associated_SNPs_29533 0 0 1 0 1 TJP2 chr9:71863140 5'GT 71863140 Upstream 91bp 27006 chr9 2161812 2161812 1 + C T SKCM 2161813 + 2161793 2161833 41 AGCTAAGAAGAGAAGAGGCCGCCCTCCCGCTGAGAAACTGT AGCTAAGAAGAGAAGAGGCTGCCCTCCCGCTGAGAAACTGT < 41bp 0.498278808094835 0.70931792873663 NA NA prediction 0.41863585747326 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2161813 chr9:2161812 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_29534 0 0 1 0 1 SMARCA2 chr9:2161903 5'GT 2161903 Upstream 92bp 27007 chr7 79818422 79818422 1 + G T LUAD 79818423 + 79818403 79818443 41 TAGAATTATCCATGAAGCTGGTTATTCAGAAGAGGAGTGTA TAGAATTATCCATGAAGCTTGTTATTCAGAAGAGGAGTGTA < 41bp 0.681912680494724 0.891230389792529 NA NA prediction 0.41863541859561 Functional Gain - GNAI1 ENSG00000127955 CDS Human protein_coding chr7:79818423 chr7:79818422 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_29535 0 0 1 0 1 GNAI1 chr7:79818406 3'AG 79818406 Downstream 17bp 27008 chr17 47294030 47294030 1 + G A SKCM 47294031 + 47294011 47294051 41 AGGGGGCCGCCCTGCGGCAGGTGGAAGCCCGTGTAAGCACG AGGGGGCCGCCCTGCGGCAAGTGGAAGCCCGTGTAAGCACG < 41bp 0.557440200047551 0.766757521101988 NA NA prediction 0.418634642108873 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47294031 chr17:47294030 synonymous SNV . 0 20 hm7G_associated_SNPs_29536 0 0 0 0 2 ABI3 chr17:47294042 5'GT 47294042 Upstream 13bp 27009 chr17 47294030 47294030 1 + G A SKCM 47294031 + 47294011 47294051 41 AGGGGGCCGCCCTGCGGCAGGTGGAAGCCCGTGTAAGCACG AGGGGGCCGCCCTGCGGCAAGTGGAAGCCCGTGTAAGCACG < 41bp 0.557440200047551 0.766757521101988 NA NA prediction 0.418634642108873 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47294031 chr17:47294030 synonymous SNV . 0 20 hm7G_associated_SNPs_29536 0 0 0 0 2 ABI3 chr17:47294060 5'GT 47294060 Upstream 31bp 27010 chr17 73221237 73221237 1 + C T UCEC 73221238 + 73221218 73221258 41 GGGCCGGCTGGATGAGGCCCGACAGATGCTCTCCAAGGAAG GGGCCGGCTGGATGAGGCCTGACAGATGCTCTCCAAGGAAG < 41bp 0.527604008513183 0.736921176940483 NA NA prediction 0.418634336854599 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73221238 chr17:73221237 stopgain 0.997 1 20 hm7G_associated_SNPs_29537 0 0 1 0 1 NUP85 chr17:73221198 3'AG 73221198 Downstream 40bp 27011 chr7 100028301 100028301 1 + G A COAD 100028302 + 100028282 100028322 41 CTAAGTCATCCCCCCTTCCGGCCAAAGGGCGAGATCCGGTG CTAAGTCATCCCCCCTTCCAGCCAAAGGGCGAGATCCGGTG < 41bp 0.557884604887634 0.767201196314598 NA NA prediction 0.418633182853928 Functional Gain - MEPCE ENSG00000146834 CDS Human protein_coding chr7:100028302 chr7:100028301 synonymous SNV . 0 20 hm7G_associated_SNPs_29538 0 0 1 0 1 MEPCE chr7:100028238 3'AG 100028238 Downstream 64bp 27012 chr3 8579093 8579093 1 + C T rs139605755 8579094 + 8579074 8579114 41 CTTTTGACACCATCACCTACGAGTGGGCTCCCCCTGGAGTC CTTTTGACACCATCACCTATGAGTGGGCTCCCCCTGGAGTC < 41bp 0.511489695306662 0.720805424267402 NA NA prediction 0.418631457921479 Functional Gain - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8579094 chr3:8579093 synonymous SNV . 0 20 hm7G_associated_SNPs_29540 0 0 0 0 1 LMCD1 chr3:8579126 5'GT 8579126 Upstream 34bp 27013 chr5 137761113 137761113 1 + C T UCEC 137761114 + 137761094 137761134 41 CCACAGCCAGTGCTGGTTTCGGGGGTACATAAAAAGCTCAA CCACAGCCAGTGCTGGTTTTGGGGGTACATAAAAAGCTCAA < 41bp 0.540815040788033 0.750129002888837 NA NA prediction 0.418627924201609 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137761114 chr5:137761113 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_29541 0 0 1 0 1 KDM3B chr5:137761100 3'AG 137761100 Downstream 14bp 27014 chr2 95941838 95941838 1 + C T rs142187492 95941839 + 95941819 95941859 41 GCGCTGGCCTGTGAGCGCGCGGCCCTCATGGTCTTCCTGCT GCGCTGGCCTGTGAGCGCGTGGCCCTCATGGTCTTCCTGCT < 41bp 0.506086028439828 0.715397981538291 NA NA prediction 0.418623906196927 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95941839 chr2:95941838 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_29542 0 0 0 0 1 PROM2 chr2:95941880 5'GT 95941880 Upstream 43bp 27015 chr1 45191054 45191054 1 + G T UCEC 45191055 + 45191035 45191075 41 ACCTCACACACTTCGAGGAGGATGTAGAATCAAAGGAGTAA ACCTCACACACTTCGAGGATGATGTAGAATCAAAGGAGTAA < 41bp 0.679990649147551 0.889299164528646 NA NA prediction 0.41861703076219 Functional Gain - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45191055 chr1:45191054 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_29544 0 0 0 0 1 C1orf228 chr1:45190963 3'AG 45190963 Downstream 92bp 27016 chrX 130215791 130215791 1 + C T SKCM 130215792 + 130215772 130215812 41 CGCAGGACGAAGATGGTATCGATACACAGCCTCTCTGAGCT CGCAGGACGAAGATGGTATTGATACACAGCCTCTCTGAGCT < 41bp 0.513306679184575 0.722611561767227 NA NA prediction 0.418609765165304 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130215792 chrX:130215791 nonsynonymous SNV 0.891 2 20 hm7G_associated_SNPs_29545 0 0 0 0 1 ARHGAP36 chrX:130215734 3'AG 130215734 Downstream 58bp 27017 chr11 67815268 67815268 1 + G A SKCM 67815269 + 67815249 67815289 41 ATGGCCAACCAGTCTGGCTGGAGGTGAGGCCCGGGCCCCAG ATGGCCAACCAGTCTGGCTAGAGGTGAGGCCCGGGCCCCAG < 41bp 0.530718812804073 0.740022926718673 NA NA prediction 0.418608227829199 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67815269 chr11:67815268 stopgain 0.991 1 20 hm7G_associated_SNPs_29546 0 0 1 0 1 TCIRG1 chr11:67815271 5'GT 67815271 Upstream 4bp 27018 chr17 36646362 36646362 1 + C T COAD 36646363 + 36646343 36646383 41 ACAAATACAACGACTTCATCGAGGCCAACCGCATTGAGGAC ACAAATACAACGACTTCATTGAGGCCAACCGCATTGAGGAC < 41bp 0.496878212113662 0.709302822435596 NA NA prediction 0.418605644871192 Functional Gain - ARHGAP23 ENSG00000225485 CDS Human other chr17:36646363 chr17:36646362 synonymous SNV . 0 20 hm7G_associated_SNPs_29547 0 0 0 0 2 ARHGAP23 chr17:36646343 3'AG 36646343 Downstream 20bp 27019 chr17 36646362 36646362 1 + C T COAD 36646363 + 36646343 36646383 41 ACAAATACAACGACTTCATCGAGGCCAACCGCATTGAGGAC ACAAATACAACGACTTCATTGAGGCCAACCGCATTGAGGAC < 41bp 0.496878212113662 0.709302822435596 NA NA prediction 0.418605644871192 Functional Gain - ARHGAP23 ENSG00000225485 CDS Human other chr17:36646363 chr17:36646362 synonymous SNV . 0 20 hm7G_associated_SNPs_29547 0 0 0 0 2 ARHGAP23 chr17:36646416 5'GT 36646416 Upstream 55bp 27020 chr7 909072 909072 1 + C T rs143436648 909073 + 909053 909093 41 CCATGATGATCCACCCAGCCGCCTTCACTCTGGAGCACATC CCATGATGATCCACCCAGCTGCCTTCACTCTGGAGCACATC < 41bp 0.498494164998044 0.709301635305853 NA NA prediction 0.418603270611707 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:909073 chr7:909072 synonymous SNV . 0 20 hm7G_associated_SNPs_29548 0 0 1 0 2 SUN1 chr7:908986 3'AG 908986 Downstream 87bp 27021 chr7 909072 909072 1 + C T rs143436648 909073 + 909053 909093 41 CCATGATGATCCACCCAGCCGCCTTCACTCTGGAGCACATC CCATGATGATCCACCCAGCTGCCTTCACTCTGGAGCACATC < 41bp 0.498494164998044 0.709301635305853 NA NA prediction 0.418603270611707 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:909073 chr7:909072 synonymous SNV . 0 20 hm7G_associated_SNPs_29548 0 0 1 0 2 SUN1 chr7:909153 5'GT 909153 Upstream 82bp 27022 chr12 50027858 50027858 1 + G A SKCM 50027859 + 50027839 50027879 41 AGGGGTTCCTGCAGCAGCTGGAGGAGGGCCCCAGCAGGTGA AGGGGTTCCTGCAGCAGCTAGAGGAGGGCCCCAGCAGGTGA < 41bp 0.494885327685887 0.709300391692896 NA NA prediction 0.418600783385791 Functional Gain - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50027859 chr12:50027858 synonymous SNV . 0 20 hm7G_associated_SNPs_29549 0 0 1 0 1 PRPF40B chr12:50027875 5'GT 50027875 Upstream 18bp 27023 chr11 65734953 65734953 1 + G A SKCM 65734954 + 65734934 65734974 41 TCCCTCAGACTGCGGGGACGGGGTCGCCGCCGAGTGTCCGA TCCCTCAGACTGCGGGGACAGGGTCGCCGCCGAGTGTCCGA < 41bp 0.486746251091234 0.709299907520568 NA NA prediction 0.418599815041136 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65734954 chr11:65734953 nonsynonymous SNV 0.340 1 20 hm7G_associated_SNPs_29550 0 0 1 0 1 SART1 chr11:65734942 3'AG 65734942 Downstream 12bp 27024 chr8 118170063 118170063 1 + C T READ 118170064 + 118170044 118170084 41 TGATCATCGTTTCCAGCTGCGCAGTGGCGGCCAACATTGTG TGATCATCGTTTCCAGCTGTGCAGTGGCGGCCAACATTGTG < 41bp 0.500224912769532 0.709522731052935 NA NA prediction 0.418595636566808 Functional Gain - SLC30A8 ENSG00000164756 CDS Human protein_coding chr8:118170064 chr8:118170063 synonymous SNV . 0 20 hm7G_associated_SNPs_29551 0 0 0 0 1 SLC30A8 chr8:118170083 5'GT 118170083 Upstream 21bp 27025 chr10 73047500 73047500 1 + C T UCEC 73047501 + 73047481 73047521 41 GCCAGGCATTCCAGAAGACCGCCTGCACCACCATCTGCCCA GCCAGGCATTCCAGAAGACTGCCTGCACCACCATCTGCCCA < 41bp 0.495742070625295 0.709293406476005 NA NA prediction 0.418586812952011 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73047501 chr10:73047500 synonymous SNV . 0 20 hm7G_associated_SNPs_29553 0 0 0 0 1 UNC5B chr10:73047522 5'GT 73047522 Upstream 23bp 27026 chr9 127969880 127969880 1 + C T UCEC 127969881 + 127969861 127969901 41 TGGAGACAGCCCCTGTGCTCGAGTTGGCCACAGCTGTTCAT TGGAGACAGCCCCTGTGCTTGAGTTGGCCACAGCTGTTCAT < 41bp 0.530895849660561 0.740185514209583 NA NA prediction 0.418579329098044 Functional Gain - RABEPK ENSG00000136933 CDS Human protein_coding chr9:127969881 chr9:127969880 stopgain 0.996 1 20 hm7G_associated_SNPs_29556 0 0 1 0 1 RABEPK chr9:127969843 3'AG 127969843 Downstream 38bp 27027 chr17 26711525 26711525 1 + G A SKCM 26711526 + 26711506 26711546 41 CCTCCGTGCCCAGCTGGAAGGAGGCCGAGGTTCAGACGTGG CCTCCGTGCCCAGCTGGAAAGAGGCCGAGGTTCAGACGTGG < 41bp 0.507372726181404 0.716659198549672 NA NA prediction 0.418572944736536 Functional Gain - SARM1 ENSG00000004139 CDS Human protein_coding chr17:26711526 chr17:26711525 synonymous SNV . 0 20 hm7G_associated_SNPs_29558 0 0 0 0 1 SARM1 chr17:26711588 5'GT 26711588 Upstream 64bp 27028 chr5 176295848 176295848 1 + C T UCEC 176295849 + 176295829 176295869 41 CCCCAATGTATACATCACGCGGGAGCACAGCCTGGTGGTGC CCCCAATGTATACATCACGTGGGAGCACAGCCTGGTGGTGC < 41bp 0.514329927553715 0.723614846685397 NA NA prediction 0.418569838263366 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295849 chr5:176295848 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_29559 0 0 0 0 1 UNC5A chr5:176295785 3'AG 176295785 Downstream 64bp 27029 chr6 80745093 80745093 1 + G T LUSC 80745094 + 80745074 80745114 41 TGGGAACGCAAGAGTTACTGGAAAAATATGTTAGAGGCAGT TGGGAACGCAAGAGTTACTTGAAAAATATGTTAGAGGCAGT < 41bp 0.686548744783974 0.895832791123928 NA NA prediction 0.418568092679908 Functional Gain - TTK ENSG00000112742 CDS Human protein_coding chr6:80745094 chr6:80745093 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29560 0 0 1 0 1 TTK chr6:80745134 5'GT 80745134 Upstream 42bp 27030 chr4 949631 949631 1 + C T UCEC 949632 + 949612 949652 41 AGCGCGTGGAAGCCTTCAGCGACGGAGTCTACGCCATCGTG AGCGCGTGGAAGCCTTCAGTGACGGAGTCTACGCCATCGTG < 41bp 0.50469890062233 0.713981160857842 NA NA prediction 0.418564520471025 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:949632 chr4:949631 synonymous SNV . 0 20 hm7G_associated_SNPs_29561 0 0 1 0 2 TMEM175 chr4:949543 3'AG 949543 Downstream 89bp 27031 chr4 949631 949631 1 + C T UCEC 949632 + 949612 949652 41 AGCGCGTGGAAGCCTTCAGCGACGGAGTCTACGCCATCGTG AGCGCGTGGAAGCCTTCAGTGACGGAGTCTACGCCATCGTG < 41bp 0.50469890062233 0.713981160857842 NA NA prediction 0.418564520471025 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:949632 chr4:949631 synonymous SNV . 0 20 hm7G_associated_SNPs_29561 0 0 1 0 2 TMEM175 chr4:949678 5'GT 949678 Upstream 48bp 27032 chr16 19027896 19027896 1 + C T STAD 19027897 + 19027877 19027917 41 GACCCACCTGGAGCTGTGGCGGGAGGACATCCGCAGCATAG GACCCACCTGGAGCTGTGGTGGGAGGACATCCGCAGCATAG < 41bp 0.492904913040422 0.709277838528784 NA NA prediction 0.418555677057569 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19027897 chr16:19027896 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_29563 0 0 1 0 1 TMC7 chr16:19027920 5'GT 19027920 Upstream 25bp 27033 chr2 152293392 152293392 1 + C T COAD 152293393 + 152293373 152293413 41 CCCCGAATGAACCTGAGTTCGAATTTAGGTGGAATGGCCAC CCCCGAATGAACCTGAGTTTGAATTTAGGTGGAATGGCCAC < 41bp 0.504937895044642 0.714210339752073 NA NA prediction 0.418544889414862 Functional Gain - RIF1 ENSG00000080345 CDS Human protein_coding chr2:152293393 chr2:152293392 nonsynonymous SNV 0.919 0 20 hm7G_associated_SNPs_29566 0 0 1 0 1 RIF1 chr2:152293341 3'AG 152293341 Downstream 52bp 27034 chr1 177226508 177226508 1 + G A SKCM 177226509 + 177226489 177226529 41 ACCATATCCAGATAGCCACGGGGGCCATCAAGGTAATGACC ACCATATCCAGATAGCCACAGGGGCCATCAAGGTAATGACC < 41bp 0.498749647003219 0.70927176261075 NA NA prediction 0.418543525221501 Functional Gain - BRINP2 ENSG00000198797 CDS Human protein_coding chr1:177226509 chr1:177226508 synonymous SNV . 0 20 hm7G_associated_SNPs_29567 0 0 0 0 1 BRINP2 chr1:177226520 5'GT 177226520 Upstream 13bp 27035 chr1 44134790 44134790 1 + G T UCEC 44134791 + 44134771 44134811 41 CCTGGCCAAGCACCGAATAGGGACAAAGAGGCACCGAGTTT CCTGGCCAAGCACCGAATATGGACAAAGAGGCACCGAGTTT < 41bp 0.696257291959656 0.905521702510223 NA NA prediction 0.418528821101134 Functional Gain - KDM4A ENSG00000066135 CDS Human protein_coding chr1:44134791 chr1:44134790 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29570 0 0 1 0 1 KDM4A chr1:44134771 3'AG 44134771 Downstream 20bp 27036 chr16 624123 624123 1 + G A STAD 624124 + 624104 624144 41 CTGCGTCTCGACGGACAGCGGGCTGCTGGTGGGACGGTGGG CTGCGTCTCGACGGACAGCAGGCTGCTGGTGGGACGGTGGG < 41bp 0.560515956201891 0.76976973595245 NA NA prediction 0.418507559501117 Functional Gain - PIGQ ENSG00000007541 CDS Human protein_coding chr16:624124 chr16:624123 nonsynonymous SNV 0.806 4 20 hm7G_associated_SNPs_29573 0 0 1 0 1 PIGQ chr16:624066 3'AG 624066 Downstream 58bp 27037 chr1 236907965 236907965 1 + C T STAD 236907966 + 236907946 236907986 41 CAGAAGGATTACGAGTCGGCGTCGCTGACAGAGGTGCGGGC CAGAAGGATTACGAGTCGGTGTCGCTGACAGAGGTGCGGGC < 41bp 0.502311459535827 0.711563701678916 NA NA prediction 0.41850448428618 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236907966 chr1:236907965 nonsynonymous SNV 0.042 3 20 hm7G_associated_SNPs_29574 1 0 1 0 1 ACTN2 chr1:236907926 3'AG 236907926 Downstream 40bp 27038 chr21 43962523 43962523 1 + G A UCEC 43962524 + 43962504 43962544 41 TCTCCTGCAGGTCATCAACGGGCTGGTGCAGACCACCGGCT TCTCCTGCAGGTCATCAACAGGCTGGTGCAGACCACCGGCT < 41bp 0.567663997958633 0.776909342249732 NA NA prediction 0.418490688582198 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43962524 chr21:43962523 nonsynonymous SNV 0.492 4 20 hm7G_associated_SNPs_29577 0 0 0 0 2 SLC37A1 chr21:43962514 3'AG 43962514 Downstream 10bp 27039 chr21 43962523 43962523 1 + G A UCEC 43962524 + 43962504 43962544 41 TCTCCTGCAGGTCATCAACGGGCTGGTGCAGACCACCGGCT TCTCCTGCAGGTCATCAACAGGCTGGTGCAGACCACCGGCT < 41bp 0.567663997958633 0.776909342249732 NA NA prediction 0.418490688582198 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43962524 chr21:43962523 nonsynonymous SNV 0.492 4 20 hm7G_associated_SNPs_29577 0 0 0 0 2 SLC37A1 chr21:43962590 5'GT 43962590 Upstream 68bp 27040 chr20 56138115 56138115 1 + G A LUAD 56138116 + 56138096 56138136 41 ACAACTGGCCCTGCAACCCGGAGCTGACGCTCATCGCCCAC ACAACTGGCCCTGCAACCCAGAGCTGACGCTCATCGCCCAC < 41bp 0.515092239121164 0.724337514576895 NA NA prediction 0.418490550911463 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56138116 chr20:56138115 synonymous SNV . 0 20 hm7G_associated_SNPs_29578 0 0 0 0 1 PCK1 chr20:56138084 3'AG 56138084 Downstream 32bp 27041 chr14 103342798 103342798 1 + C T STAD 103342799 + 103342779 103342819 41 CGAGACCACGTGGAGAAGGCGTGTAAATACCGGGAAGCCAC CGAGACCACGTGGAGAAGGTGTGTAAATACCGGGAAGCCAC < 41bp 0.502714518671789 0.711956195805897 NA NA prediction 0.418483354268216 Functional Gain - TRAF3 ENSG00000131323 CDS Human protein_coding chr14:103342799 chr14:103342798 nonsynonymous SNV 0.964 1 20 hm7G_associated_SNPs_29579 0 0 1 0 1 TRAF3 chr14:103342862 5'GT 103342862 Upstream 65bp 27042 chrX 10090747 10090747 1 + C T UCEC 10090748 + 10090728 10090768 41 CGGATTATTCGCTAGCCAGCGACAGTGGGGTGTTTGAACCT CGGATTATTCGCTAGCCAGTGACAGTGGGGTGTTTGAACCT < 41bp 0.501745025098584 0.710983401446355 NA NA prediction 0.418476752695542 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10090748 chrX:10090747 synonymous SNV . 0 20 hm7G_associated_SNPs_29580 0 0 0 0 2 WWC3 chrX:10090659 3'AG 10090659 Downstream 89bp 27043 chrX 10090747 10090747 1 + C T UCEC 10090748 + 10090728 10090768 41 CGGATTATTCGCTAGCCAGCGACAGTGGGGTGTTTGAACCT CGGATTATTCGCTAGCCAGTGACAGTGGGGTGTTTGAACCT < 41bp 0.501745025098584 0.710983401446355 NA NA prediction 0.418476752695542 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10090748 chrX:10090747 synonymous SNV . 0 20 hm7G_associated_SNPs_29580 0 0 0 0 2 WWC3 chrX:10090779 5'GT 10090779 Upstream 33bp 27044 chr17 47233947 47233947 1 + C T rs147804520 47233948 + 47233928 47233968 41 GCCTCCAGTTTGAAGGACCCGATGCCCCCGTCTATGAGGTG GCCTCCAGTTTGAAGGACCTGATGCCCCCGTCTATGAGGTG < 41bp 0.500159946764798 0.709390530417969 NA NA prediction 0.418461167306343 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47233948 chr17:47233947 synonymous SNV . 0 20 hm7G_associated_SNPs_29583 0 0 0 0 2 B4GALNT2 chr17:47233928 3'AG 47233928 Downstream 20bp 27045 chr17 47233947 47233947 1 + C T rs147804520 47233948 + 47233928 47233968 41 GCCTCCAGTTTGAAGGACCCGATGCCCCCGTCTATGAGGTG GCCTCCAGTTTGAAGGACCTGATGCCCCCGTCTATGAGGTG < 41bp 0.500159946764798 0.709390530417969 NA NA prediction 0.418461167306343 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47233948 chr17:47233947 synonymous SNV . 0 20 hm7G_associated_SNPs_29583 0 0 0 0 2 B4GALNT2 chr17:47233965 5'GT 47233965 Upstream 19bp 27046 chr3 10130159 10130159 1 + C T UCEC 10130160 + 10130140 10130180 41 TGCCAGACAATTCCTCTGTCGGGTGTGGCCAAGTGGGGATA TGCCAGACAATTCCTCTGTTGGGTGTGGCCAAGTGGGGATA < 41bp 0.524127922956442 0.733358404932678 NA NA prediction 0.418460963952472 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10130160 chr3:10130159 nonsynonymous SNV 0.378 4 20 hm7G_associated_SNPs_29584 0 0 1 0 2 FANCD2 chr3:10130133 3'AG 10130133 Downstream 27bp 27047 chr3 10130159 10130159 1 + C T UCEC 10130160 + 10130140 10130180 41 TGCCAGACAATTCCTCTGTCGGGTGTGGCCAAGTGGGGATA TGCCAGACAATTCCTCTGTTGGGTGTGGCCAAGTGGGGATA < 41bp 0.524127922956442 0.733358404932678 NA NA prediction 0.418460963952472 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10130160 chr3:10130159 nonsynonymous SNV 0.378 4 20 hm7G_associated_SNPs_29584 0 0 1 0 2 FANCD2 chr3:10130226 5'GT 10130226 Upstream 68bp 27048 chr19 41622408 41622408 1 + C T PRAD 41622409 + 41622389 41622429 41 AGTGCACCTGGGACCCAGGCGGGTGGTGGTCCTCAGCGGGT AGTGCACCTGGGACCCAGGTGGGTGGTGGTCCTCAGCGGGT < 41bp 0.511484443652221 0.720714518057203 NA NA prediction 0.418460148809963 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622409 chr19:41622408 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_29585 0 0 0 0 1 CYP2F1 chr19:41622360 3'AG 41622360 Downstream 49bp 27049 chr11 120319860 120319860 1 + C T COAD 120319861 + 120319841 120319881 41 AGGGGAAGAAAAAGGGAAGCGAAGAGGATTCCCCAGCATCC AGGGGAAGAAAAAGGGAAGTGAAGAGGATTCCCCAGCATCC < 41bp 0.508053667704384 0.717283596483747 NA NA prediction 0.418459857558726 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120319861 chr11:120319860 stopgain 1.000 0 20 hm7G_associated_SNPs_29586 0 0 1 0 2 ARHGEF12 chr11:120319818 3'AG 120319818 Downstream 43bp 27050 chr11 120319860 120319860 1 + C T COAD 120319861 + 120319841 120319881 41 AGGGGAAGAAAAAGGGAAGCGAAGAGGATTCCCCAGCATCC AGGGGAAGAAAAAGGGAAGTGAAGAGGATTCCCCAGCATCC < 41bp 0.508053667704384 0.717283596483747 NA NA prediction 0.418459857558726 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120319861 chr11:120319860 stopgain 1.000 0 20 hm7G_associated_SNPs_29586 0 0 1 0 2 ARHGEF12 chr11:120319923 5'GT 120319923 Upstream 64bp 27051 chr20 57276094 57276094 1 + C T UCEC 57276095 + 57276075 57276115 41 TCTATGGGGTTGGCAAAGCCGCCCTGCATCCCCCAGCCCTG TCTATGGGGTTGGCAAAGCTGCCCTGCATCCCCCAGCCCTG < 41bp 0.506635951746081 0.715865212484891 NA NA prediction 0.41845852147762 Functional Gain - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57276095 chr20:57276094 synonymous SNV . 0 20 hm7G_associated_SNPs_29587 0 0 1 0 1 NPEPL1 chr20:57276072 3'AG 57276072 Downstream 23bp 27052 chr5 156757823 156757823 1 + C T SKCM 156757824 + 156757804 156757844 41 TCCGTATCCACCGTCCAATCGCTATGAAACACTGCTGAAGC TCCGTATCCACCGTCCAATTGCTATGAAACACTGCTGAAGC < 41bp 0.514477556502524 0.723702020499332 NA NA prediction 0.418448927993617 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156757824 chr5:156757823 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_29590 0 0 1 0 1 CYFIP2 chr5:156757858 5'GT 156757858 Upstream 36bp 27053 chr20 39766419 39766419 1 - C T LIHC 39766418 - 39766398 39766438 41 CCTGGAAGGTCTTCCGCTCGGGTCGCTGCGACTTCTTGGAG CCTGGAAGGTCTTCCGCTCAGGTCGCTGCGACTTCTTGGAG < 41bp 0.512806950998313 0.722030366178753 NA NA prediction 0.418446830360881 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39766418 chr20:39766419 synonymous SNV . 0 20 hm7G_associated_SNPs_29591 0 0 0 0 1 PLCG1 chr20:39766354 5'GT 39766354 Upstream 66bp 27054 chr10 72285765 72285765 1 + G A CESC 72285766 + 72285746 72285786 41 GGCAGGCACCCCATTTGAGGGCCTACAGGGCAGTGGCACGA GGCAGGCACCCCATTTGAGAGCCTACAGGGCAGTGGCACGA < 41bp 0.566329741110849 0.775545927437643 NA NA prediction 0.418432372653589 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72285766 chr10:72285765 nonsynonymous SNV 0.414 0 20 hm7G_associated_SNPs_29595 0 0 1 0 1 PALD1 chr10:72285679 3'AG 72285679 Downstream 87bp 27055 chr10 45920517 45920517 1 + G A GBM 45920518 + 45920498 45920538 41 AGCTGCCCGAGAAGCTCCCGGTGACCACGGAGATGGTAGAG AGCTGCCCGAGAAGCTCCCAGTGACCACGGAGATGGTAGAG < 41bp 0.533280855686702 0.742496927249013 NA NA prediction 0.418432143124621 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45920518 chr10:45920517 synonymous SNV . 0 20 hm7G_associated_SNPs_29596 0 0 0 0 1 ALOX5 chr10:45920580 5'GT 45920580 Upstream 64bp 27056 chr11 112072814 112072814 1 + G T UCEC 112072815 + 112072795 112072835 41 TCAATGCCTTTGAGGACCAGGGCTGTGTTATAATTGATTTG TCAATGCCTTTGAGGACCATGGCTGTGTTATAATTGATTTG < 41bp 0.372119992107734 0.709210207674594 NA NA prediction 0.418420415349188 Functional Gain - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112072815 chr11:112072814 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_29598 0 0 0 0 2 BCO2 chr11:112072746 3'AG 112072746 Downstream 69bp 27057 chr11 112072814 112072814 1 + G T UCEC 112072815 + 112072795 112072835 41 TCAATGCCTTTGAGGACCAGGGCTGTGTTATAATTGATTTG TCAATGCCTTTGAGGACCATGGCTGTGTTATAATTGATTTG < 41bp 0.372119992107734 0.709210207674594 NA NA prediction 0.418420415349188 Functional Gain - BCO2 ENSG00000197580 CDS Human protein_coding chr11:112072815 chr11:112072814 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_29598 0 0 0 0 2 BCO2 chr11:112072913 5'GT 112072913 Upstream 100bp 27058 chr5 68413193 68413193 1 + G T LIHC 68413194 + 68413174 68413214 41 TTTGCTGCCCTGATGAGTAGGTGGAAAGCCACTCGGATTTT TTTGCTGCCCTGATGAGTATGTGGAAAGCCACTCGGATTTT < 41bp 0.388026673992984 0.709207180266535 NA NA prediction 0.41841436053307 Functional Gain - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68413194 chr5:68413193 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_29599 0 0 1 0 1 SLC30A5 chr5:68413223 5'GT 68413223 Upstream 31bp 27059 chr11 61504660 61504660 1 + G A STAD 61504661 + 61504641 61504681 41 TCTCGGTCTCCAGGGCCGCGGAACCAAACACTACGGCCTGA TCTCGGTCTCCAGGGCCGCAGAACCAAACACTACGGCCTGA < 41bp 0.52464752449247 0.733854690388069 NA NA prediction 0.418414331791199 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61504661 chr11:61504660 nonsynonymous SNV 0.933 4 20 hm7G_associated_SNPs_29600 0 0 0 0 1 DAGLA chr11:61504654 3'AG 61504654 Downstream 7bp 27060 chr13 114164726 114164726 1 + G T LUAD 114164727 + 114164707 114164747 41 TCCTCATGGGCAGTGCTCGGGGTGACAAAGAAGGTAGGTGA TCCTCATGGGCAGTGCTCGTGGTGACAAAGAAGGTAGGTGA < 41bp 0.696135841235585 0.905342928540425 NA NA prediction 0.418414174609679 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114164727 chr13:114164726 synonymous SNV . 0 20 hm7G_associated_SNPs_29601 0 0 1 0 1 TMCO3 chr13:114164739 5'GT 114164739 Upstream 14bp 27061 chr12 122437780 122437780 1 + C T BRCA 122437781 + 122437761 122437801 41 ACAAGAGCTTTGAGGTGCTCGGTTATACCAACTCCAAAGGG ACAAGAGCTTTGAGGTGCTTGGTTATACCAACTCCAAAGGG < 41bp 0.494982514519797 0.709206875782281 NA NA prediction 0.418413751564561 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122437781 chr12:122437780 synonymous SNV . 0 20 hm7G_associated_SNPs_29602 0 0 0 0 1 WDR66 chr12:122437850 5'GT 122437850 Upstream 71bp 27062 chr11 111784206 111784206 1 + G A UCEC 111784207 + 111784187 111784227 41 GACCCCCACACTCTACCATGGCTACTATGTCCGGCCTCGGG GACCCCCACACTCTACCATAGCTACTATGTCCGGCCTCGGG < 41bp 0.480937040147005 0.709204785645473 NA NA prediction 0.418409571290946 Functional Gain - HSPB2 ENSG00000170276;ENSG00000254445 CDS Human other chr11:111784207 chr11:111784206 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_29603 0 0 0 0 1 HSPB2 chr11:111784165 3'AG 111784165 Downstream 42bp 27063 chr1 156177734 156177734 1 + C T CESC 156177735 + 156177715 156177755 41 ATTGTCTTTCAAGCTGTCTCGGGGCCCCTGGCTGCAGCCAC ATTGTCTTTCAAGCTGTCTTGGGGCCCCTGGCTGCAGCCAC < 41bp 0.526032088271533 0.735235113805626 NA NA prediction 0.418406051068186 Functional Gain - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156177735 chr1:156177734 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_29604 0 0 0 0 3 SLC25A44 chr1:156177653 3'AG 156177653 Downstream 82bp 27064 chr1 156177734 156177734 1 + C T CESC 156177735 + 156177715 156177755 41 ATTGTCTTTCAAGCTGTCTCGGGGCCCCTGGCTGCAGCCAC ATTGTCTTTCAAGCTGTCTTGGGGCCCCTGGCTGCAGCCAC < 41bp 0.526032088271533 0.735235113805626 NA NA prediction 0.418406051068186 Functional Gain - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156177735 chr1:156177734 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_29604 0 0 0 0 3 SLC25A44 chr1:156177677 3'AG 156177677 Downstream 58bp 27065 chr1 156177734 156177734 1 + C T CESC 156177735 + 156177715 156177755 41 ATTGTCTTTCAAGCTGTCTCGGGGCCCCTGGCTGCAGCCAC ATTGTCTTTCAAGCTGTCTTGGGGCCCCTGGCTGCAGCCAC < 41bp 0.526032088271533 0.735235113805626 NA NA prediction 0.418406051068186 Functional Gain - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156177735 chr1:156177734 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_29604 0 0 0 0 3 SLC25A44 chr1:156177804 5'GT 156177804 Upstream 71bp 27066 chr15 73994806 73994806 1 + C T rs7173448 73994807 + 73994787 73994827 41 AACCGCACGGCCCTCTTCCCGGACCTGCTGGCACAGGGCAA AACCGCACGGCCCTCTTCCTGGACCTGCTGGCACAGGGCAA < 41bp 0.514095577063904 0.723295493395446 NA NA prediction 0.418399832663083 Functional Gain - CD276 ENSG00000103855 CDS Human protein_coding chr15:73994807 chr15:73994806 nonsynonymous SNV 0.911 0 20 hm7G_associated_SNPs_29606 0 0 1 0 1 CD276 chr15:73994721 3'AG 73994721 Downstream 86bp 27067 chr16 72130873 72130873 1 + C T UCEC 72130874 + 72130854 72130894 41 GATTGGAAGAAGGAGAAATCGCGGGATCGAGACTATGACCG GATTGGAAGAAGGAGAAATTGCGGGATCGAGACTATGACCG < 41bp 0.509479375088551 0.718678923884517 NA NA prediction 0.418399097591932 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72130874 chr16:72130873 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_29607 0 0 1 0 1 DHX38 chr16:72130908 5'GT 72130908 Upstream 36bp 27068 chr19 45314491 45314491 1 + C T UCEC 45314492 + 45314472 45314512 41 TCTCTTGCAGATGCCCAGGCGGAGGTGCGCTTGTCTGTACC TCTCTTGCAGATGCCCAGGTGGAGGTGCGCTTGTCTGTACC < 41bp 0.515577782569194 0.724774400316288 NA NA prediction 0.418393235494189 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45314492 chr19:45314491 nonsynonymous SNV 0.536 2 20 hm7G_associated_SNPs_29608 0 0 1 0 1 BCAM chr19:45314482 3'AG 45314482 Downstream 10bp 27069 chr2 232156084 232156084 1 + C T rs148296188 232156085 + 232156065 232156105 41 GGGAATGGAAGACATCCTACGCTGCTTCATCAAAGAAGGCA GGGAATGGAAGACATCCTATGCTGCTTCATCAAAGAAGGCA < 41bp 0.522627642946238 0.731823931977057 NA NA prediction 0.418392578061637 Functional Gain - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232156085 chr2:232156084 nonsynonymous SNV 0.939 2 20 hm7G_associated_SNPs_29609 0 0 0 1 2 ARMC9 chr2:232156066 3'AG 232156066 Downstream 19bp 27070 chr2 232156084 232156084 1 + C T rs148296188 232156085 + 232156065 232156105 41 GGGAATGGAAGACATCCTACGCTGCTTCATCAAAGAAGGCA GGGAATGGAAGACATCCTATGCTGCTTCATCAAAGAAGGCA < 41bp 0.522627642946238 0.731823931977057 NA NA prediction 0.418392578061637 Functional Gain - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232156085 chr2:232156084 nonsynonymous SNV 0.939 2 20 hm7G_associated_SNPs_29609 0 0 0 1 2 ARMC9 chr2:232156156 5'GT 232156156 Upstream 73bp 27071 chr11 64360988 64360988 1 + G A COAD 64360989 + 64360969 64361009 41 GCCTGTTCCGCTTCCTGTTGGCCTTTGCCGTGGCAGGCGTC GCCTGTTCCGCTTCCTGTTAGCCTTTGCCGTGGCAGGCGTC < 41bp 0.479101320667822 0.709196110476159 NA NA prediction 0.418392220952318 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64360989 chr11:64360988 synonymous SNV . 0 20 hm7G_associated_SNPs_29610 0 0 0 0 1 SLC22A12 chr11:64361031 5'GT 64361031 Upstream 44bp 27072 chr1 155018929 155018929 1 + C T UCEC 155018930 + 155018910 155018950 41 CTCCATCTTCGACACCATCCGCCACCACTCCTTCCTGCAGT CTCCATCTTCGACACCATCTGCCACCACTCCTTCCTGCAGT < 41bp 0.516912541023817 0.726108558536004 NA NA prediction 0.418392035024373 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155018930 chr1:155018929 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29611 0 0 0 0 1 DCST1 chr1:155018836 3'AG 155018836 Downstream 94bp 27073 chr13 99092263 99092263 1 + C T UCEC 99092264 + 99092244 99092284 41 GCCCCACTGCCTGACCCTCCGGGGCCAGCGGCAGTCCATCA GCCCCACTGCCTGACCCTCTGGGGCCAGCGGCAGTCCATCA < 41bp 0.495484437952941 0.709189076478768 NA NA prediction 0.418378152957536 Functional Gain - FARP1 ENSG00000152767 CDS Human protein_coding chr13:99092264 chr13:99092263 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_29615 0 0 1 0 2 FARP1 chr13:99092215 3'AG 99092215 Downstream 49bp 27074 chr13 99092263 99092263 1 + C T UCEC 99092264 + 99092244 99092284 41 GCCCCACTGCCTGACCCTCCGGGGCCAGCGGCAGTCCATCA GCCCCACTGCCTGACCCTCTGGGGCCAGCGGCAGTCCATCA < 41bp 0.495484437952941 0.709189076478768 NA NA prediction 0.418378152957536 Functional Gain - FARP1 ENSG00000152767 CDS Human protein_coding chr13:99092264 chr13:99092263 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_29615 0 0 1 0 2 FARP1 chr13:99092297 5'GT 99092297 Upstream 35bp 27075 chr12 119591420 119591420 1 + C T UCEC 119591421 + 119591401 119591441 41 CAGAAGCTCTAGGTCCCGCCGCAGCCCTAGCTACTCCCGCT CAGAAGCTCTAGGTCCCGCTGCAGCCCTAGCTACTCCCGCT < 41bp 0.51368578562161 0.722874105724712 NA NA prediction 0.418376640206204 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119591421 chr12:119591420 nonsynonymous SNV 0.868 4 20 hm7G_associated_SNPs_29616 0 0 1 0 2 SRRM4 chr12:119591344 3'AG 119591344 Downstream 77bp 27076 chr12 119591420 119591420 1 + C T UCEC 119591421 + 119591401 119591441 41 CAGAAGCTCTAGGTCCCGCCGCAGCCCTAGCTACTCCCGCT CAGAAGCTCTAGGTCCCGCTGCAGCCCTAGCTACTCCCGCT < 41bp 0.51368578562161 0.722874105724712 NA NA prediction 0.418376640206204 Functional Gain - SRRM4 ENSG00000139767 CDS Human protein_coding chr12:119591421 chr12:119591420 nonsynonymous SNV 0.868 4 20 hm7G_associated_SNPs_29616 0 0 1 0 2 SRRM4 chr12:119591454 5'GT 119591454 Upstream 35bp 27077 chr16 85667566 85667566 1 + C T rs375816658 85667567 + 85667547 85667587 41 CGCTAGGGATGCTTTCCACCGCGACCAGGACCACCGCCACC CGCTAGGGATGCTTTCCACTGCGACCAGGACCACCGCCACC < 41bp 0.498368499129007 0.709184287679534 NA NA prediction 0.418368575359068 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85667567 chr16:85667566 synonymous SNV . 0 20 hm7G_associated_SNPs_29618 0 0 1 0 1 GSE1 chr16:85667520 3'AG 85667520 Downstream 47bp 27078 chr15 80883944 80883944 1 + C T CESC 80883945 + 80883925 80883965 41 TAGCGGGCAGTTCCAAGGGCGGCCCTCGGAAGTCTGGTCGC TAGCGGGCAGTTCCAAGGGTGGCCCTCGGAAGTCTGGTCGC < 41bp 0.512829210500186 0.722012709899842 NA NA prediction 0.418366998799311 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80883945 chr15:80883944 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_29619 0 0 0 0 1 ARNT2 chr15:80883909 3'AG 80883909 Downstream 36bp 27079 chr7 98256593 98256593 1 + G A SKCM 98256594 + 98256574 98256614 41 GAGAGAAGCTGGGCACTGGGGAGAACCTGGCCCCCTGGCAC GAGAGAAGCTGGGCACTGGAGAGAACCTGGCCCCCTGGCAC < 41bp 0.509582395126843 0.718763923733951 NA NA prediction 0.418363057214217 Functional Gain - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98256594 chr7:98256593 synonymous SNV . 0 20 hm7G_associated_SNPs_29621 0 0 0 0 1 NPTX2 chr7:98256656 5'GT 98256656 Upstream 64bp 27080 chr15 92981780 92981780 1 + C T SKCM 92981781 + 92981761 92981801 41 TGTGCCATCGTGGGCAACTCGGGGGTCTTGCTGAACAGCGG TGTGCCATCGTGGGCAACTTGGGGGTCTTGCTGAACAGCGG < 41bp 0.509642792953401 0.71882409302655 NA NA prediction 0.418362600146297 Functional Gain - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92981781 chr15:92981780 nonsynonymous SNV 0.953 4 20 hm7G_associated_SNPs_29622 0 0 0 0 1 ST8SIA2 chr15:92981840 5'GT 92981840 Upstream 61bp 27081 chrX 153418551 153418551 1 + G T UCEC 153418552 + 153418532 153418572 41 TGGATCTGGTCTGCTGTGTGGACAGCCCCGCCCATCTTTGG TGGATCTGGTCTGCTGTGTTGACAGCCCCGCCCATCTTTGG < 41bp 0.359417227162576 0.709180419813163 NA NA prediction 0.418360839626326 Functional Gain - OPN1LW ENSG00000102076 CDS Human protein_coding chrX:153418552 chrX:153418551 nonsynonymous SNV 0.603 4 20 hm7G_associated_SNPs_29623 0 0 0 0 1 OPN1LW chrX:153418581 5'GT 153418581 Upstream 31bp 27082 chr10 104357019 104357019 1 + C T UCEC 104357020 + 104357000 104357040 41 ACAGCCGGAGCATCTGCATCGGCACACAGCCCCGGCGACTC ACAGCCGGAGCATCTGCATTGGCACACAGCCCCGGCGACTC < 41bp 0.506674020688924 0.715853101865018 NA NA prediction 0.418358162352189 Functional Gain - SUFU ENSG00000107882 CDS Human protein_coding chr10:104357020 chr10:104357019 synonymous SNV . 0 20 hm7G_associated_SNPs_29624 2 0 1 0 1 SUFU chr10:104357050 5'GT 104357050 Upstream 32bp 27083 chr3 39170604 39170604 1 + C T SKCM 39170605 + 39170585 39170625 41 AGGACACCATCAATGAGTTCGGTGGCACACCAGAAGAGAAC AGGACACCATCAATGAGTTTGGTGGCACACCAGAAGAGAAC < 41bp 0.539464166985354 0.748638935683103 NA NA prediction 0.418349537395499 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39170605 chr3:39170604 synonymous SNV . 0 20 hm7G_associated_SNPs_29626 0 0 0 0 1 TTC21A chr3:39170563 3'AG 39170563 Downstream 42bp 27084 chr12 3129845 3129845 1 + C T STAD 3129846 + 3129826 3129866 41 CCATCGCCCTCTGCGCCCCCGGCACCCCCATGGCAGGGCCG CCATCGCCCTCTGCGCCCCTGGCACCCCCATGGCAGGGCCG < 41bp 0.516926133024748 0.726098009884892 NA NA prediction 0.418343753720289 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3129846 chr12:3129845 nonsynonymous SNV 0.018 0 20 hm7G_associated_SNPs_29627 0 0 1 0 1 TEAD4 chr12:3129939 5'GT 3129939 Upstream 95bp 27085 chrX 51640956 51640956 1 + C T UCEC 51640957 + 51640937 51640977 41 ATATTCTCATCAGTACCCCCGAGTCCCTGGCTGGCATACTG ATATTCTCATCAGTACCCCTGAGTCCCTGGCTGGCATACTG < 41bp 0.499996407612176 0.709168125146573 NA NA prediction 0.418336250293146 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51640957 chrX:51640956 synonymous SNV . 0 20 hm7G_associated_SNPs_29631 0 0 1 0 2 MAGED1 chrX:51640891 3'AG 51640891 Downstream 66bp 27086 chrX 51640956 51640956 1 + C T UCEC 51640957 + 51640937 51640977 41 ATATTCTCATCAGTACCCCCGAGTCCCTGGCTGGCATACTG ATATTCTCATCAGTACCCCTGAGTCCCTGGCTGGCATACTG < 41bp 0.499996407612176 0.709168125146573 NA NA prediction 0.418336250293146 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51640957 chrX:51640956 synonymous SNV . 0 20 hm7G_associated_SNPs_29631 0 0 1 0 2 MAGED1 chrX:51640982 5'GT 51640982 Upstream 27bp 27087 chr11 6261855 6261855 1 + G A COAD 6261856 + 6261836 6261876 41 ACATGAACACTGCAGATGCGGCTTTCTACCCAGATCATGCA ACATGAACACTGCAGATGCAGCTTTCTACCCAGATCATGCA < 41bp 0.506720772521256 0.715885893560714 NA NA prediction 0.418330242078915 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261856 chr11:6261855 synonymous SNV . 0 20 hm7G_associated_SNPs_29633 0 0 0 0 1 CNGA4 chr11:6261941 5'GT 6261941 Upstream 87bp 27088 chr5 60822178 60822178 1 + C T UCEC 60822179 + 60822159 60822199 41 TATTGTTAATACATTAAGACGACAGCAGCAGAAACAGTTGG TATTGTTAATACATTAAGATGACAGCAGCAGAAACAGTTGG < 41bp 0.521652516317071 0.730817234538497 NA NA prediction 0.418329436442852 Functional Gain - ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60822179 chr5:60822178 stopgain 0.999 1 20 hm7G_associated_SNPs_29634 0 0 1 0 1 ZSWIM6 chr5:60822223 5'GT 60822223 Upstream 46bp 27089 chr22 30054193 30054193 1 + G T UCEC 30054194 + 30054174 30054214 41 ACAGGGATGAAGCTGAAATGGAATATCTGAAGATAGCTCAG ACAGGGATGAAGCTGAAATTGAATATCTGAAGATAGCTCAG < 41bp 0.37506698833465 0.709163695163786 NA NA prediction 0.418327390327572 Functional Gain - NF2 ENSG00000186575 CDS Human protein_coding chr22:30054194 chr22:30054193 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29635 0 0 1 0 2 NF2 chr22:30054178 3'AG 30054178 Downstream 16bp 27090 chr22 30054193 30054193 1 + G T UCEC 30054194 + 30054174 30054214 41 ACAGGGATGAAGCTGAAATGGAATATCTGAAGATAGCTCAG ACAGGGATGAAGCTGAAATTGAATATCTGAAGATAGCTCAG < 41bp 0.37506698833465 0.709163695163786 NA NA prediction 0.418327390327572 Functional Gain - NF2 ENSG00000186575 CDS Human protein_coding chr22:30054194 chr22:30054193 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29635 0 0 1 0 2 NF2 chr22:30054253 5'GT 30054253 Upstream 61bp 27091 chr3 129694827 129694827 1 + G A GBM 129694828 + 129694808 129694848 41 AGCGCCTCCTCTTCCTCCGGGAAAACATCCAGCGGCTGCAA AGCGCCTCCTCTTCCTCCGAGAAAACATCCAGCGGCTGCAA < 41bp 0.547364172104728 0.756524307679199 NA NA prediction 0.418320271148943 Functional Gain - TRH ENSG00000170893 CDS Human protein_coding chr3:129694828 chr3:129694827 synonymous SNV . 0 20 hm7G_associated_SNPs_29636 0 0 0 0 1 TRH chr3:129694870 5'GT 129694870 Upstream 44bp 27092 chr19 48198695 48198695 1 + C T CESC 48198696 + 48198676 48198716 41 CCCTGAATGTGGCCAAGGCCGCTTCCTCCGGGCCAGGGAAG CCCTGAATGTGGCCAAGGCTGCTTCCTCCGGGCCAGGGAAG < 41bp 0.500653624302409 0.709811003537504 NA NA prediction 0.418314758470191 Functional Gain - BICRA ENSG00000063169 CDS Human protein_coding chr19:48198696 chr19:48198695 synonymous SNV . 0 20 hm7G_associated_SNPs_29638 0 0 0 0 2 BICRA chr19:48198622 3'AG 48198622 Downstream 74bp 27093 chr19 48198695 48198695 1 + C T CESC 48198696 + 48198676 48198716 41 CCCTGAATGTGGCCAAGGCCGCTTCCTCCGGGCCAGGGAAG CCCTGAATGTGGCCAAGGCTGCTTCCTCCGGGCCAGGGAAG < 41bp 0.500653624302409 0.709811003537504 NA NA prediction 0.418314758470191 Functional Gain - BICRA ENSG00000063169 CDS Human protein_coding chr19:48198696 chr19:48198695 synonymous SNV . 0 20 hm7G_associated_SNPs_29638 0 0 0 0 2 BICRA chr19:48198731 5'GT 48198731 Upstream 37bp 27094 chr15 74622668 74622668 1 + G A KIRC 74622669 + 74622649 74622689 41 GGAGGAGGAAGAGGGGCAGGGCAAAGCCAGTGAGGCCCAGA GGAGGAGGAAGAGGGGCAGAGCAAAGCCAGTGAGGCCCAGA < 41bp 0.571498389595251 0.780653831757306 NA NA prediction 0.418310884324109 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74622669 chr15:74622668 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_29639 0 0 0 0 1 CCDC33 chr15:74622695 5'GT 74622695 Upstream 28bp 27095 chr17 27064382 27064382 1 + G A CESC 27064383 + 27064363 27064403 41 TTTGCACCTATCTCTGACCGGTACAGCCCTGAGCTTCGCCA TTTGCACCTATCTCTGACCAGTACAGCCCTGAGCTTCGCCA < 41bp 0.528836802765143 0.737983045499679 NA NA prediction 0.418292485469072 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27064383 chr17:27064382 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29640 0 0 1 0 1 NEK8 chr17:27064324 3'AG 27064324 Downstream 59bp 27096 chr17 58234013 58234013 1 + C T COAD 58234014 + 58233994 58234034 41 GGTGGACAAAAAACTGGGACGCTTCTTCTTCTCTGGCTACG GGTGGACAAAAAACTGGGATGCTTCTTCTTCTCTGGCTACG < 41bp 0.51712972035651 0.726273616066548 NA NA prediction 0.418287791420078 Functional Gain - CA4 ENSG00000167434 CDS Human protein_coding chr17:58234014 chr17:58234013 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_29641 0 0 0 0 2 CA4 chr17:58233921 3'AG 58233921 Downstream 93bp 27097 chr17 58234013 58234013 1 + C T COAD 58234014 + 58233994 58234034 41 GGTGGACAAAAAACTGGGACGCTTCTTCTTCTCTGGCTACG GGTGGACAAAAAACTGGGATGCTTCTTCTTCTCTGGCTACG < 41bp 0.51712972035651 0.726273616066548 NA NA prediction 0.418287791420078 Functional Gain - CA4 ENSG00000167434 CDS Human protein_coding chr17:58234014 chr17:58234013 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_29641 0 0 0 0 2 CA4 chr17:58234076 5'GT 58234076 Upstream 64bp 27098 chr11 124953754 124953754 1 + C T UCEC 124953755 + 124953735 124953775 41 GGGACCTGTCTACACTCTTCGATGTTGGTGGCATCATAGGT GGGACCTGTCTACACTCTTTGATGTTGGTGGCATCATAGGT < 41bp 0.518208171896575 0.727350763744869 NA NA prediction 0.418285183696586 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124953755 chr11:124953754 synonymous SNV . 0 20 hm7G_associated_SNPs_29642 0 0 0 0 2 SLC37A2 chr11:124953711 3'AG 124953711 Downstream 44bp 27099 chr11 124953754 124953754 1 + C T UCEC 124953755 + 124953735 124953775 41 GGGACCTGTCTACACTCTTCGATGTTGGTGGCATCATAGGT GGGACCTGTCTACACTCTTTGATGTTGGTGGCATCATAGGT < 41bp 0.518208171896575 0.727350763744869 NA NA prediction 0.418285183696586 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124953755 chr11:124953754 synonymous SNV . 0 20 hm7G_associated_SNPs_29642 0 0 0 0 2 SLC37A2 chr11:124953773 5'GT 124953773 Upstream 20bp 27100 chr12 58018712 58018712 1 + G T LUAD 58018713 + 58018693 58018733 41 ACTGTACTTTGGGACCCGTGGGCAGTTTCGCTGCAACCTGG ACTGTACTTTGGGACCCGTTGGCAGTTTCGCTGCAACCTGG < 41bp 0.348182401201002 0.70914040953756 NA NA prediction 0.418280819075119 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58018713 chr12:58018712 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_29646 0 0 0 0 2 SLC26A10 chr12:58018649 3'AG 58018649 Downstream 64bp 27101 chr12 58018712 58018712 1 + G T LUAD 58018713 + 58018693 58018733 41 ACTGTACTTTGGGACCCGTGGGCAGTTTCGCTGCAACCTGG ACTGTACTTTGGGACCCGTTGGCAGTTTCGCTGCAACCTGG < 41bp 0.348182401201002 0.70914040953756 NA NA prediction 0.418280819075119 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58018713 chr12:58018712 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_29646 0 0 0 0 2 SLC26A10 chr12:58018765 5'GT 58018765 Upstream 54bp 27102 chr9 35752016 35752016 1 + G T rs570195434 35752017 + 35751997 35752037 41 CCAGCGGCGACGTGGGGCAGGGGGTGTCCCCTCTGTGTCAC CCAGCGGCGACGTGGGGCATGGGGTGTCCCCTCTGTGTCAC < 41bp 0.357502356330017 0.70913926709206 NA NA prediction 0.41827853418412 Functional Gain - RGP1 ENSG00000107185 CDS Human protein_coding chr9:35752017 chr9:35752016 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_29647 0 0 0 0 1 RGP1 chr9:35751953 3'AG 35751953 Downstream 64bp 27103 chr1 248028201 248028201 1 + G A CESC 248028202 + 248028182 248028222 41 AGCTGGCGGATGAGCTGCAGGAGAGGTGCCAGCGCCCGGCC AGCTGGCGGATGAGCTGCAAGAGAGGTGCCAGCGCCCGGCC < 41bp 0.51438064411955 0.72350964802179 NA NA prediction 0.41825800780448 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248028202 chr1:248028201 synonymous SNV . 0 20 hm7G_associated_SNPs_29651 0 0 1 0 1 TRIM58 chr1:248028237 5'GT 248028237 Upstream 37bp 27104 chr5 148977395 148977395 1 + G A HNSC 148977396 + 148977376 148977416 41 GTCCGGACAGGGAAGGTAGGGCCTCTGAGGACAGATCGCTG GTCCGGACAGGGAAGGTAGAGCCTCTGAGGACAGATCGCTG < 41bp 0.486285967406555 0.709128170577703 NA NA prediction 0.418256341155406 Functional Gain - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148977396 chr5:148977395 synonymous SNV . 0 20 hm7G_associated_SNPs_29652 0 0 0 0 1 ARHGEF37 chr5:148977322 3'AG 148977322 Downstream 74bp 27105 chr15 22969282 22969282 1 + C T rs74003075 22969283 + 22969263 22969303 41 ACAACGTGTCAGCGCCCTACGGGAGGATCACCCTGCACGTC ACAACGTGTCAGCGCCCTATGGGAGGATCACCCTGCACGTC < 41bp 0.511932104108891 0.721058307156505 NA NA prediction 0.418252406095227 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22969283 chr15:22969282 synonymous SNV . 0 20 hm7G_associated_SNPs_29653 0 0 1 0 1 CYFIP1 chr15:22969362 5'GT 22969362 Upstream 81bp 27106 chr7 55240808 55240808 1 + G T UCEC 55240809 + 55240789 55240829 41 CGCTGCGGAGGCTGCTGCAGGAGAGGGAGGTGAGTGCCAGT CGCTGCGGAGGCTGCTGCATGAGAGGGAGGTGAGTGCCAGT < 41bp 0.376290055091437 0.709125633807498 NA NA prediction 0.418251267614995 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55240809 chr7:55240808 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_29654 0 0 1 0 1 EGFR chr7:55240817 5'GT 55240817 Upstream 10bp 27107 chr17 41179224 41179224 1 + G A COAD 41179225 + 41179205 41179245 41 TCTTACTATGATAATGTCCGGCCTCTGGCCTATCCTGATTC TCTTACTATGATAATGTCCAGCCTCTGGCCTATCCTGATTC < 41bp 0.502647145348682 0.711772234345487 NA NA prediction 0.41825017799361 Functional Gain - RND2 ENSG00000108830 CDS Human protein_coding chr17:41179225 chr17:41179224 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_29655 0 0 1 0 2 RND2 chr17:41179200 3'AG 41179200 Downstream 25bp 27108 chr17 41179224 41179224 1 + G A COAD 41179225 + 41179205 41179245 41 TCTTACTATGATAATGTCCGGCCTCTGGCCTATCCTGATTC TCTTACTATGATAATGTCCAGCCTCTGGCCTATCCTGATTC < 41bp 0.502647145348682 0.711772234345487 NA NA prediction 0.41825017799361 Functional Gain - RND2 ENSG00000108830 CDS Human protein_coding chr17:41179225 chr17:41179224 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_29655 0 0 1 0 2 RND2 chr17:41179309 5'GT 41179309 Upstream 86bp 27109 chr22 24035129 24035129 1 + C T rs17003397 24035130 + 24035110 24035150 41 GAGGAGCTGCCTGACATGACGACCTTCCCTCCCAGGCTGCT GAGGAGCTGCCTGACATGATGACCTTCCCTCCCAGGCTGCT < 41bp 0.489761449896486 0.70911988933881 NA NA prediction 0.418239778677619 Functional Gain - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24035130 chr22:24035129 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_29657 0 0 0 0 1 RGL4 chr22:24035178 5'GT 24035178 Upstream 50bp 27110 chr1 156902286 156902286 1 + G A SKCM 156902287 + 156902267 156902307 41 ATCAGATGCAGTTCTCCAAGGCCAAGAGTGCATCCAAGGGT ATCAGATGCAGTTCTCCAAAGCCAAGAGTGCATCCAAGGGT < 41bp 0.559886391555042 0.769006039313534 NA NA prediction 0.418239295516982 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902287 chr1:156902286 synonymous SNV . 0 20 hm7G_associated_SNPs_29658 0 0 0 0 2 LRRC71 chr1:156902216 3'AG 156902216 Downstream 71bp 27111 chr1 156902286 156902286 1 + G A SKCM 156902287 + 156902267 156902307 41 ATCAGATGCAGTTCTCCAAGGCCAAGAGTGCATCCAAGGGT ATCAGATGCAGTTCTCCAAAGCCAAGAGTGCATCCAAGGGT < 41bp 0.559886391555042 0.769006039313534 NA NA prediction 0.418239295516982 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902287 chr1:156902286 synonymous SNV . 0 20 hm7G_associated_SNPs_29658 0 0 0 0 2 LRRC71 chr1:156902337 5'GT 156902337 Upstream 52bp 27112 chr19 18119801 18119801 1 + G A rs189196235 18119802 + 18119782 18119822 41 CCCTGGTGACATCCTTCGAGGGCAAACACGGTAGTGTCCGC CCCTGGTGACATCCTTCGAAGGCAAACACGGTAGTGTCCGC < 41bp 0.572758338215543 0.781877845692758 NA NA prediction 0.418239014954429 Functional Gain - ARRDC2 ENSG00000105643 CDS Human protein_coding chr19:18119802 chr19:18119801 synonymous SNV . 0 20 hm7G_associated_SNPs_29659 0 0 0 0 1 ARRDC2 chr19:18119780 3'AG 18119780 Downstream 22bp 27113 chr1 159163324 159163324 1 + G A SKCM 159163325 + 159163305 159163345 41 CCTGCAGCCCGGCTCACCTGGAGAAAGGGTGACCAAGAACT CCTGCAGCCCGGCTCACCTAGAGAAAGGGTGACCAAGAACT < 41bp 0.533223576255907 0.742340170138724 NA NA prediction 0.418233187765634 Functional Gain - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159163325 chr1:159163324 stopgain 0.999 1 20 hm7G_associated_SNPs_29660 0 0 0 0 1 CADM3 chr1:159163350 5'GT 159163350 Upstream 27bp 27114 chr11 108562630 108562630 1 + C T COAD 108562631 + 108562611 108562651 41 TCTGTACCGAGTGTTTTGCCGGCTACGTCCTGGTGTTTCTA TCTGTACCGAGTGTTTTGCTGGCTACGTCCTGGTGTTTCTA < 41bp 0.509147246269769 0.718263610514536 NA NA prediction 0.418232728489534 Functional Gain - DDX10 ENSG00000178105 CDS Human protein_coding chr11:108562631 chr11:108562630 nonsynonymous SNV 0.549 4 20 hm7G_associated_SNPs_29661 0 0 1 0 1 DDX10 chr11:108562603 3'AG 108562603 Downstream 28bp 27115 chr9 135762799 135762799 1 + G A STAD 135762800 + 135762780 135762820 41 TGCAACAGCTCCACAGACCGGCGGGTTCTGCTCATGTTCCT TGCAACAGCTCCACAGACCAGCGGGTTCTGCTCATGTTCCT < 41bp 0.504683769331557 0.71379720983265 NA NA prediction 0.418226881002186 Functional Gain - SPACA9 ENSG00000165698 CDS Human protein_coding chr9:135762800 chr9:135762799 nonsynonymous SNV 0.911 4 20 hm7G_associated_SNPs_29662 0 0 0 0 1 SPACA9 chr9:135762756 3'AG 135762756 Downstream 44bp 27116 chr19 47879753 47879753 1 + C T GBM 47879754 + 47879734 47879774 41 TGCACCCCACCTGCGTCTTCGCTGGCAGCCCCGAGGTGCTG TGCACCCCACCTGCGTCTTTGCTGGCAGCCCCGAGGTGCTG < 41bp 0.500038431654143 0.709150506712482 NA NA prediction 0.418224150116677 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47879754 chr19:47879753 synonymous SNV . 0 20 hm7G_associated_SNPs_29663 0 0 1 0 2 DHX34 chr19:47879700 3'AG 47879700 Downstream 54bp 27117 chr19 47879753 47879753 1 + C T GBM 47879754 + 47879734 47879774 41 TGCACCCCACCTGCGTCTTCGCTGGCAGCCCCGAGGTGCTG TGCACCCCACCTGCGTCTTTGCTGGCAGCCCCGAGGTGCTG < 41bp 0.500038431654143 0.709150506712482 NA NA prediction 0.418224150116677 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47879754 chr19:47879753 synonymous SNV . 0 20 hm7G_associated_SNPs_29663 0 0 1 0 2 DHX34 chr19:47879817 5'GT 47879817 Upstream 65bp 27118 chr16 3556397 3556397 1 + G T UCEC 3556398 + 3556378 3556418 41 ACCGAGTTTTCTTCATTAAGGCAATTGCCCAGTTCATGGTT ACCGAGTTTTCTTCATTAATGCAATTGCCCAGTTCATGGTT < 41bp 0.374996098855877 0.709111403457697 NA NA prediction 0.418222806915393 Functional Gain - CLUAP1 ENSG00000103351 CDS Human protein_coding chr16:3556398 chr16:3556397 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_29664 0 0 1 0 2 CLUAP1 chr16:3556331 3'AG 3556331 Downstream 67bp 27119 chr16 3556397 3556397 1 + G T UCEC 3556398 + 3556378 3556418 41 ACCGAGTTTTCTTCATTAAGGCAATTGCCCAGTTCATGGTT ACCGAGTTTTCTTCATTAATGCAATTGCCCAGTTCATGGTT < 41bp 0.374996098855877 0.709111403457697 NA NA prediction 0.418222806915393 Functional Gain - CLUAP1 ENSG00000103351 CDS Human protein_coding chr16:3556398 chr16:3556397 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_29664 0 0 1 0 2 CLUAP1 chr16:3556415 5'GT 3556415 Upstream 19bp 27120 chr10 115964594 115964594 1 + C T BLCA 115964595 + 115964575 115964615 41 ACTGCTCCATAAAGATTGTCGACATCTTGGAAGAGGAAGTG ACTGCTCCATAAAGATTGTTGACATCTTGGAAGAGGAAGTG < 41bp 0.498156285978465 0.709108175418523 NA NA prediction 0.418216350837047 Functional Gain - TDRD1 ENSG00000095627 CDS Human protein_coding chr10:115964595 chr10:115964594 synonymous SNV . 0 20 hm7G_associated_SNPs_29665 0 0 0 0 1 TDRD1 chr10:115964652 5'GT 115964652 Upstream 59bp 27121 chr14 24572068 24572068 1 + C T UCEC 24572069 + 24572049 24572089 41 CAGAGGGTGTCCCCATTGACGCCATCATCTTTGGTGGCCGC CAGAGGGTGTCCCCATTGATGCCATCATCTTTGGTGGCCGC < 41bp 0.509654543404737 0.718761358675283 NA NA prediction 0.418213630541091 Functional Gain - PCK2 ENSG00000100889 CDS Human protein_coding chr14:24572069 chr14:24572068 synonymous SNV . 0 20 hm7G_associated_SNPs_29666 0 0 1 0 1 PCK2 chr14:24572099 5'GT 24572099 Upstream 32bp 27122 chr3 154884795 154884795 1 + G T PRAD 154884796 + 154884776 154884816 41 AGGACACGAAATCACCCATGGCTTCGATGACAATGGTAAAG AGGACACGAAATCACCCATTGCTTCGATGACAATGGTAAAG < 41bp 0.368261716686543 0.70910194516738 NA NA prediction 0.418203890334759 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154884796 chr3:154884795 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_29667 0 0 0 0 1 MME chr3:154884810 5'GT 154884810 Upstream 16bp 27123 chr6 43171267 43171267 1 + G A UCEC 43171268 + 43171248 43171288 41 TGTCTCTTCTACACAATTCGGGCACAAGCCTGGAGCCGGGA TGTCTCTTCTACACAATTCAGGCACAAGCCTGGAGCCGGGA < 41bp 0.516480825918397 0.725582227086294 NA NA prediction 0.418202802335793 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43171268 chr6:43171267 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29668 0 0 0 0 1 CUL9 chr6:43171330 5'GT 43171330 Upstream 64bp 27124 chr1 154961257 154961257 1 + C T SKCM 154961258 + 154961238 154961278 41 GCCCGTTTGCCCCAGGGATCGCTGGTCCCCTACATGCCCAA GCCCGTTTGCCCCAGGGATTGCTGGTCCCCTACATGCCCAA < 41bp 0.502152726715615 0.711249773252127 NA NA prediction 0.418194093073025 Functional Gain - FLAD1 ENSG00000160688 CDS Human protein_coding chr1:154961258 chr1:154961257 nonsynonymous SNV 0.151 0 20 hm7G_associated_SNPs_29670 0 0 1 0 1 FLAD1 chr1:154961325 5'GT 154961325 Upstream 69bp 27125 chr4 88047478 88047478 1 + C T CESC 88047479 + 88047459 88047499 41 AAGGGCTCCAGAAGCTCCTCGGAGCACAAGGTGAGCAGGGG AAGGGCTCCAGAAGCTCCTTGGAGCACAAGGTGAGCAGGGG < 41bp 0.501506951499485 0.710599061428749 NA NA prediction 0.418184219858527 Functional Gain - AFF1 ENSG00000172493 CDS Human protein_coding chr4:88047479 chr4:88047478 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_29673 0 0 1 0 1 AFF1 chr4:88047488 5'GT 88047488 Upstream 11bp 27126 chr12 8906555 8906555 1 + C T COAD 8906556 + 8906536 8906576 41 CATCTTATTCGCCATGAAGCGCCATACCTGTTCCAGAAGTA CATCTTATTCGCCATGAAGTGCCATACCTGTTCCAGAAGTA < 41bp 0.523389107281303 0.732474698688163 NA NA prediction 0.41817118281372 Functional Gain - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8906556 chr12:8906555 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_29676 0 0 1 0 1 RIMKLB chr12:8906486 3'AG 8906486 Downstream 70bp 27127 chr20 57782030 57782030 1 + C T BRCA 57782031 + 57782011 57782051 41 TCGCACACCAACCTGGGTGCGAAGAAGAAGCCGCCACCCTC TCGCACACCAACCTGGGTGTGAAGAAGAAGCCGCCACCCTC < 41bp 0.503416663205275 0.712501797881998 NA NA prediction 0.418170269353445 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57782031 chr20:57782030 stopgain 0.001 0 20 hm7G_associated_SNPs_29678 0 0 0 0 2 ZNF831 chr20:57781960 3'AG 57781960 Downstream 71bp 27128 chr20 57782030 57782030 1 + C T BRCA 57782031 + 57782011 57782051 41 TCGCACACCAACCTGGGTGCGAAGAAGAAGCCGCCACCCTC TCGCACACCAACCTGGGTGTGAAGAAGAAGCCGCCACCCTC < 41bp 0.503416663205275 0.712501797881998 NA NA prediction 0.418170269353445 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57782031 chr20:57782030 stopgain 0.001 0 20 hm7G_associated_SNPs_29678 0 0 0 0 2 ZNF831 chr20:57782111 5'GT 57782111 Upstream 82bp 27129 chr11 1081707 1081707 1 + G A LGG 1081708 + 1081688 1081728 41 TCAAGACGGCCAGCGGGCTGGTGGAGGCCACGGGGGCCGGC TCAAGACGGCCAGCGGGCTAGTGGAGGCCACGGGGGCCGGC < 41bp 0.512701983215096 0.721783253578693 NA NA prediction 0.418162540727194 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1081708 chr11:1081707 synonymous SNV . 0 20 hm7G_associated_SNPs_29682 0 0 0 0 1 MUC2 chr11:1081649 3'AG 1081649 Downstream 59bp 27130 chr12 53677910 53677910 1 + C T COAD 53677911 + 53677891 53677931 41 GACATTGATCTCTGTCAGTCGGACCTGCAGCAGGTTCTGTT GACATTGATCTCTGTCAGTTGGACCTGCAGCAGGTTCTGTT < 41bp 0.533623345929284 0.742704538460367 NA NA prediction 0.418162385062165 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53677911 chr12:53677910 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_29683 0 0 1 0 2 ESPL1 chr12:53677842 3'AG 53677842 Downstream 69bp 27131 chr12 53677910 53677910 1 + C T COAD 53677911 + 53677891 53677931 41 GACATTGATCTCTGTCAGTCGGACCTGCAGCAGGTTCTGTT GACATTGATCTCTGTCAGTTGGACCTGCAGCAGGTTCTGTT < 41bp 0.533623345929284 0.742704538460367 NA NA prediction 0.418162385062165 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53677911 chr12:53677910 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_29683 0 0 1 0 2 ESPL1 chr12:53677951 5'GT 53677951 Upstream 42bp 27132 chr13 40254170 40254170 1 + C T UCEC 40254171 + 40254151 40254191 41 GGCTTATGAAAGACTTTACCGATGGGCTCAAAGTAAGTGAT GGCTTATGAAAGACTTTACTGATGGGCTCAAAGTAAGTGAT < 41bp 0.505689447969459 0.714768937151175 NA NA prediction 0.418158978363432 Functional Gain - COG6 ENSG00000133103 CDS Human protein_coding chr13:40254171 chr13:40254170 stopgain 0.995 1 20 hm7G_associated_SNPs_29684 0 0 0 0 2 COG6 chr13:40254112 3'AG 40254112 Downstream 59bp 27133 chr13 40254170 40254170 1 + C T UCEC 40254171 + 40254151 40254191 41 GGCTTATGAAAGACTTTACCGATGGGCTCAAAGTAAGTGAT GGCTTATGAAAGACTTTACTGATGGGCTCAAAGTAAGTGAT < 41bp 0.505689447969459 0.714768937151175 NA NA prediction 0.418158978363432 Functional Gain - COG6 ENSG00000133103 CDS Human protein_coding chr13:40254171 chr13:40254170 stopgain 0.995 1 20 hm7G_associated_SNPs_29684 0 0 0 0 2 COG6 chr13:40254182 5'GT 40254182 Upstream 13bp 27134 chrX 46898451 46898451 1 + C T CESC 46898452 + 46898432 46898472 41 AACTTGTGCAAGTTGAAGACGGGGGCTTGTATTCAGGTAAG AACTTGTGCAAGTTGAAGATGGGGGCTTGTATTCAGGTAAG < 41bp 0.521596742879431 0.730674776285993 NA NA prediction 0.418156066813125 Functional Gain - JADE3 ENSG00000102221 CDS Human protein_coding chrX:46898452 chrX:46898451 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_29685 0 0 1 0 1 JADE3 chrX:46898467 5'GT 46898467 Upstream 17bp 27135 chr17 72786417 72786417 1 + C T UCEC 72786418 + 72786398 72786438 41 CTACGAGCGGGCAGAGAAGCGGCCCATCCTGTCTGTGCGTA CTACGAGCGGGCAGAGAAGTGGCCCATCCTGTCTGTGCGTA < 41bp 0.522164196436256 0.731237242682778 NA NA prediction 0.418146092493044 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72786418 chr17:72786417 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_29689 0 0 1 0 2 TMEM104 chr17:72786339 3'AG 72786339 Downstream 79bp 27136 chr17 72786417 72786417 1 + C T UCEC 72786418 + 72786398 72786438 41 CTACGAGCGGGCAGAGAAGCGGCCCATCCTGTCTGTGCGTA CTACGAGCGGGCAGAGAAGTGGCCCATCCTGTCTGTGCGTA < 41bp 0.522164196436256 0.731237242682778 NA NA prediction 0.418146092493044 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72786418 chr17:72786417 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_29689 0 0 1 0 2 TMEM104 chr17:72786435 5'GT 72786435 Upstream 19bp 27137 chr12 58002321 58002321 1 + G A SARC 58002322 + 58002302 58002342 41 GGCTGAACACCCAAACCCAGGAGTTCGGTATCCTGGCACCA GGCTGAACACCCAAACCCAAGAGTTCGGTATCCTGGCACCA < 41bp 0.49454539754399 0.709072465380367 NA NA prediction 0.418144930760734 Functional Gain - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002322 chr12:58002321 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29690 0 0 0 0 1 DTX3 chr12:58002303 3'AG 58002303 Downstream 19bp 27138 chr2 131796452 131796452 1 + C T COAD 131796453 + 131796433 131796473 41 GCGATGGCAGTGTGGTCTGCGCTGAAGCACTCTGGGACCAT GCGATGGCAGTGTGGTCTGTGCTGAAGCACTCTGGGACCAT < 41bp 0.53378714463143 0.742856152501766 NA NA prediction 0.418138015740672 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131796453 chr2:131796452 synonymous SNV . 0 20 hm7G_associated_SNPs_29691 0 0 0 0 1 ARHGEF4 chr2:131796426 3'AG 131796426 Downstream 27bp 27139 chr12 45782044 45782044 1 + C T UCEC 45782045 + 45782025 45782065 41 AACAAGCCCGACCAGAATACGAAGCACGATGTACTCACGTA AACAAGCCCGACCAGAATATGAAGCACGATGTACTCACGTA < 41bp 0.509980052386801 0.719044677371924 NA NA prediction 0.418129249970245 Functional Gain - ANO6 ENSG00000177119 CDS Human protein_coding chr12:45782045 chr12:45782044 synonymous SNV . 0 20 hm7G_associated_SNPs_29693 0 0 0 0 1 ANO6 chr12:45782086 5'GT 45782086 Upstream 43bp 27140 chr19 6820808 6820808 1 + C T UCEC 6820809 + 6820789 6820829 41 TCGAAGCCTTTGACCTCTTCGATGTGCAGGATTTTGGCAAG TCGAAGCCTTTGACCTCTTTGATGTGCAGGATTTTGGCAAG < 41bp 0.528218192827366 0.737266906934013 NA NA prediction 0.418097428213296 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6820809 chr19:6820808 synonymous SNV . 0 20 hm7G_associated_SNPs_29696 0 0 0 0 2 VAV1 chr19:6820713 3'AG 6820713 Downstream 96bp 27141 chr19 6820808 6820808 1 + C T UCEC 6820809 + 6820789 6820829 41 TCGAAGCCTTTGACCTCTTCGATGTGCAGGATTTTGGCAAG TCGAAGCCTTTGACCTCTTTGATGTGCAGGATTTTGGCAAG < 41bp 0.528218192827366 0.737266906934013 NA NA prediction 0.418097428213296 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6820809 chr19:6820808 synonymous SNV . 0 20 hm7G_associated_SNPs_29696 0 0 0 0 2 VAV1 chr19:6820829 5'GT 6820829 Upstream 22bp 27142 chr1 78309059 78309059 1 + C T SKCM 78309060 + 78309040 78309080 41 TGCGAGACACCTTGAGCATCGCATCCACGGATTCCTTTGCT TGCGAGACACCTTGAGCATTGCATCCACGGATTCCTTTGCT < 41bp 0.499984406576986 0.709046692391885 NA NA prediction 0.418093384783771 Functional Gain - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78309060 chr1:78309059 synonymous SNV . 0 20 hm7G_associated_SNPs_29697 0 0 1 0 2 MIGA1 chr1:78308992 3'AG 78308992 Downstream 68bp 27143 chr1 78309059 78309059 1 + C T SKCM 78309060 + 78309040 78309080 41 TGCGAGACACCTTGAGCATCGCATCCACGGATTCCTTTGCT TGCGAGACACCTTGAGCATTGCATCCACGGATTCCTTTGCT < 41bp 0.499984406576986 0.709046692391885 NA NA prediction 0.418093384783771 Functional Gain - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78309060 chr1:78309059 synonymous SNV . 0 20 hm7G_associated_SNPs_29697 0 0 1 0 2 MIGA1 chr1:78309092 5'GT 78309092 Upstream 34bp 27144 chr7 128585918 128585918 1 + G A SKCM 128585919 + 128585899 128585939 41 GCCTGGGCCAAGGAGACAGGGAAATACACCGAAGGCGTGGA GCCTGGGCCAAGGAGACAGAGAAATACACCGAAGGCGTGGA < 41bp 0.524122701181112 0.733169143268889 NA NA prediction 0.418092884175554 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128585919 chr7:128585918 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_29698 0 0 0 0 1 IRF5 chr7:128585899 3'AG 128585899 Downstream 20bp 27145 chr11 118243291 118243291 1 + C T STAD 118243292 + 118243272 118243312 41 CCTCACTGTGTCCAATACCCGAACAGTTCTTCTCACCCCAG CCTCACTGTGTCCAATACCTGAACAGTTCTTCTCACCCCAG < 41bp 0.506893405828129 0.715937623508941 NA NA prediction 0.418088435361623 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118243292 chr11:118243291 stopgain 0.869 1 20 hm7G_associated_SNPs_29699 0 0 1 0 2 UBE4A chr11:118243222 3'AG 118243222 Downstream 70bp 27146 chr11 118243291 118243291 1 + C T STAD 118243292 + 118243272 118243312 41 CCTCACTGTGTCCAATACCCGAACAGTTCTTCTCACCCCAG CCTCACTGTGTCCAATACCTGAACAGTTCTTCTCACCCCAG < 41bp 0.506893405828129 0.715937623508941 NA NA prediction 0.418088435361623 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118243292 chr11:118243291 stopgain 0.869 1 20 hm7G_associated_SNPs_29699 0 0 1 0 2 UBE4A chr11:118243381 5'GT 118243381 Upstream 91bp 27147 chrX 153040183 153040183 1 + C T STAD 153040184 + 153040164 153040204 41 CAAGAGCAAGCAGGCCCTGCGGGACTACCAGAAGGTGCTAG CAAGAGCAAGCAGGCCCTGTGGGACTACCAGAAGGTGCTAG < 41bp 0.4970767649135 0.709042898308106 NA NA prediction 0.418085796616213 Functional Gain - PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153040184 chrX:153040183 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29701 0 0 0 0 2 PLXNB3 chrX:153040161 3'AG 153040161 Downstream 23bp 27148 chrX 153040183 153040183 1 + C T STAD 153040184 + 153040164 153040204 41 CAAGAGCAAGCAGGCCCTGCGGGACTACCAGAAGGTGCTAG CAAGAGCAAGCAGGCCCTGTGGGACTACCAGAAGGTGCTAG < 41bp 0.4970767649135 0.709042898308106 NA NA prediction 0.418085796616213 Functional Gain - PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153040184 chrX:153040183 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29701 0 0 0 0 2 PLXNB3 chrX:153040261 5'GT 153040261 Upstream 79bp 27149 chrX 67940852 67940852 1 + C T STAD 67940853 + 67940833 67940873 41 CGCCTGACAATGTCTGCTACGAGGGCCAGTCAGCCTACGAC CGCCTGACAATGTCTGCTATGAGGGCCAGTCAGCCTACGAC < 41bp 0.492333026987229 0.70904256578293 NA NA prediction 0.418085131565861 Functional Gain - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67940853 chrX:67940852 synonymous SNV . 0 20 hm7G_associated_SNPs_29702 0 0 0 0 1 STARD8 chrX:67940766 3'AG 67940766 Downstream 87bp 27150 chr17 40837320 40837320 1 + C T SKCM 40837321 + 40837301 40837341 41 GAAGCCTGTGGGACGTGTTCGCCTTCAGCTTCAAGACCGAG GAAGCCTGTGGGACGTGTTTGCCTTCAGCTTCAAGACCGAG < 41bp 0.53216292310653 0.741203458330036 NA NA prediction 0.418081070447011 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40837321 chr17:40837320 synonymous SNV . 0 20 hm7G_associated_SNPs_29703 0 0 1 0 1 CNTNAP1 chr17:40837235 3'AG 40837235 Downstream 86bp 27151 chr3 10255186 10255186 1 + G T LGG 10255187 + 10255167 10255207 41 GACAGCCTGTTCAAGTCCAGGATCAATCGAAAGATTCTTCC GACAGCCTGTTCAAGTCCATGATCAATCGAAAGATTCTTCC < 41bp 0.369067794861598 0.709040073671543 NA NA prediction 0.418080147343085 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10255187 chr3:10255186 stopgain 0.137 0 20 hm7G_associated_SNPs_29704 0 0 0 0 2 IRAK2 chr3:10255168 3'AG 10255168 Downstream 19bp 27152 chr3 10255186 10255186 1 + G T LGG 10255187 + 10255167 10255207 41 GACAGCCTGTTCAAGTCCAGGATCAATCGAAAGATTCTTCC GACAGCCTGTTCAAGTCCATGATCAATCGAAAGATTCTTCC < 41bp 0.369067794861598 0.709040073671543 NA NA prediction 0.418080147343085 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10255187 chr3:10255186 stopgain 0.137 0 20 hm7G_associated_SNPs_29704 0 0 0 0 2 IRAK2 chr3:10255232 5'GT 10255232 Upstream 47bp 27153 chr8 66988979 66988979 1 + C T COAD 66988980 + 66988960 66989000 41 AAGAAATCAACAACGCCCACGCAATACTTACCGACATTTCA AAGAAATCAACAACGCCCATGCAATACTTACCGACATTTCA < 41bp 0.503788784066731 0.712828552163827 NA NA prediction 0.418079536194192 Functional Gain - DNAJC5B ENSG00000147570 CDS Human protein_coding chr8:66988980 chr8:66988979 synonymous SNV . 0 20 hm7G_associated_SNPs_29706 0 0 0 1 1 DNAJC5B chr8:66988895 3'AG 66988895 Downstream 85bp 27154 chr4 1346903 1346903 1 + G A rs77892061 1346904 + 1346884 1346924 41 TTGACTTTGACCCGAACCCGGAGACGGAATCCCTTGGCATG TTGACTTTGACCCGAACCCAGAGACGGAATCCCTTGGCATG < 41bp 0.501872929478741 0.710910511849275 NA NA prediction 0.418075164741068 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1346904 chr4:1346903 synonymous SNV . 0 20 hm7G_associated_SNPs_29710 0 0 1 0 1 UVSSA chr4:1346818 3'AG 1346818 Downstream 86bp 27155 chr10 73055576 73055576 1 + G A SKCM 73055577 + 73055557 73055597 41 CTGGCCCACAGGAGGTGCTGGAGCTGGAGCGGACTCTGGGC CTGGCCCACAGGAGGTGCTAGAGCTGGAGCGGACTCTGGGC < 41bp 0.52811721069369 0.737151371956374 NA NA prediction 0.418068322525369 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73055577 chr10:73055576 synonymous SNV . 0 20 hm7G_associated_SNPs_29711 0 0 1 0 1 UNC5B chr10:73055568 3'AG 73055568 Downstream 9bp 27156 chr17 15928377 15928377 1 + C T STAD 15928378 + 15928358 15928398 41 TCTTGGGCATGTGCTTAGACGCCTGTGCTCGCTACCTTCTG TCTTGGGCATGTGCTTAGATGCCTGTGCTCGCTACCTTCTG < 41bp 0.496906941285074 0.709031082800202 NA NA prediction 0.418062165600403 Functional Gain - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15928378 chr17:15928377 synonymous SNV . 0 20 hm7G_associated_SNPs_29712 1 0 1 0 1 TTC19 chr17:15928331 3'AG 15928331 Downstream 47bp 27157 chr19 19612024 19612024 1 + C T CESC 19612025 + 19612005 19612045 41 GCTGGCGGGAGGAGAAGAGCGGCGCCATCATGTGTGAGAAC GCTGGCGGGAGGAGAAGAGTGGCGCCATCATGTGTGAGAAC < 41bp 0.518111662896186 0.727141325076181 NA NA prediction 0.418059324359991 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19612025 chr19:19612024 synonymous SNV . 0 20 hm7G_associated_SNPs_29713 0 0 1 0 2 GATAD2A chr19:19611927 3'AG 19611927 Downstream 98bp 27158 chr19 19612024 19612024 1 + C T CESC 19612025 + 19612005 19612045 41 GCTGGCGGGAGGAGAAGAGCGGCGCCATCATGTGTGAGAAC GCTGGCGGGAGGAGAAGAGTGGCGCCATCATGTGTGAGAAC < 41bp 0.518111662896186 0.727141325076181 NA NA prediction 0.418059324359991 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19612025 chr19:19612024 synonymous SNV . 0 20 hm7G_associated_SNPs_29713 0 0 1 0 2 GATAD2A chr19:19611930 3'AG 19611930 Downstream 95bp 27159 chr6 151130291 151130291 1 + C T LUAD 151130292 + 151130272 151130312 41 GGCCAGACCTGACCAGCTACGGGGAACTGGTGCTTGAGGGA GGCCAGACCTGACCAGCTATGGGGAACTGGTGCTTGAGGGA < 41bp 0.501705487902347 0.710734781414011 NA NA prediction 0.418058587023329 Functional Gain - PLEKHG1 ENSG00000120278 CDS Human protein_coding chr6:151130292 chr6:151130291 synonymous SNV . 0 20 hm7G_associated_SNPs_29714 0 0 0 0 1 PLEKHG1 chr6:151130241 3'AG 151130241 Downstream 51bp 27160 chr15 78390335 78390335 1 + G A STAD 78390336 + 78390316 78390356 41 CCGGCGTTACATCATCTCAGGAGACACCCAGAGCCACAGCA CCGGCGTTACATCATCTCAAGAGACACCCAGAGCCACAGCA < 41bp 0.525156333334599 0.734180180589227 NA NA prediction 0.418047694509255 Functional Gain - SH2D7 ENSG00000183476 CDS Human protein_coding chr15:78390336 chr15:78390335 nonsynonymous SNV 0.254 4 20 hm7G_associated_SNPs_29718 0 0 0 0 1 SH2D7 chr15:78390271 3'AG 78390271 Downstream 65bp 27161 chr7 933389 933389 1 + G A UCEC 933390 + 933370 933410 41 GTCCCAGTGGGAAGCTGACGGTGTTCACTGTGCTGTGTGAG GTCCCAGTGGGAAGCTGACAGTGTTCACTGTGCTGTGTGAG < 41bp 0.513760541290953 0.722784187620243 NA NA prediction 0.418047292658579 Functional Gain - GET4 ENSG00000239857 CDS Human protein_coding chr7:933390 chr7:933389 synonymous SNV . 0 20 hm7G_associated_SNPs_29719 0 0 1 0 2 GET4 chr7:933377 3'AG 933377 Downstream 13bp 27162 chr7 933389 933389 1 + G A UCEC 933390 + 933370 933410 41 GTCCCAGTGGGAAGCTGACGGTGTTCACTGTGCTGTGTGAG GTCCCAGTGGGAAGCTGACAGTGTTCACTGTGCTGTGTGAG < 41bp 0.513760541290953 0.722784187620243 NA NA prediction 0.418047292658579 Functional Gain - GET4 ENSG00000239857 CDS Human protein_coding chr7:933390 chr7:933389 synonymous SNV . 0 20 hm7G_associated_SNPs_29719 0 0 1 0 2 GET4 chr7:933452 5'GT 933452 Upstream 64bp 27163 chr1 233489599 233489599 1 + C T BLCA 233489600 + 233489580 233489620 41 CACCGGAGAAGTCCCCTATCGGGGCATTGATGGCCTCGCCG CACCGGAGAAGTCCCCTATTGGGGCATTGATGGCCTCGCCG < 41bp 0.533289878772691 0.742312467656106 NA NA prediction 0.418045177766831 Functional Gain - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233489600 chr1:233489599 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_29720 0 0 1 0 1 MAP3K21 chr1:233489553 3'AG 233489553 Downstream 47bp 27164 chr2 85617913 85617913 1 + G A rs17850709 85617914 + 85617894 85617934 41 TTGGCCAAGAAGAGCCCACGGCGGCTGCTCAAGACCCTGGA TTGGCCAAGAAGAGCCCACAGCGGCTGCTCAAGACCCTGGA < 41bp 0.538526011128619 0.747543564612146 NA NA prediction 0.418035106967054 Functional Gain - ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85617914 chr2:85617913 nonsynonymous SNV 0.794 0 20 hm7G_associated_SNPs_29723 0 0 1 0 1 ELMOD3 chr2:85617883 3'AG 85617883 Downstream 31bp 27165 chr11 58940200 58940200 1 + G A BLCA 58940201 + 58940181 58940221 41 CCCGCGCGGGGGGCAGCGTGGTGCTGGGCCAGGTGGACAGC CCCGCGCGGGGGGCAGCGTAGTGCTGGGCCAGGTGGACAGC < 41bp 0.490311290632501 0.709012706572638 NA NA prediction 0.418025413145276 Functional Gain - DTX4 ENSG00000110042 CDS Human protein_coding chr11:58940201 chr11:58940200 synonymous SNV . 0 20 hm7G_associated_SNPs_29726 0 0 0 0 1 DTX4 chr11:58940279 5'GT 58940279 Upstream 80bp 27166 chr4 187122395 187122395 1 + C T UCEC 187122396 + 187122376 187122416 41 TGCCCCCTCCAAAAATAAACGCAGGGCCTTTCTTGACTTGC TGCCCCCTCCAAAAATAAATGCAGGGCCTTTCTTGACTTGC < 41bp 0.499374668191336 0.709012128119042 NA NA prediction 0.418024256238084 Functional Gain - CYP4V2 ENSG00000145476 CDS Human protein_coding chr4:187122396 chr4:187122395 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_29727 0 0 0 0 1 CYP4V2 chr4:187122311 3'AG 187122311 Downstream 85bp 27167 chr4 154517466 154517466 1 + G T SKCM 154517467 + 154517447 154517487 41 ACTTACATCTGCAGCCTTTGGAAATGAAAAGGGTTGGCGTA ACTTACATCTGCAGCCTTTTGAAATGAAAAGGGTTGGCGTA < 41bp 0.700209946721142 0.909222028923335 NA NA prediction 0.418024164404386 Functional Gain - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154517467 chr4:154517466 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_29728 0 0 1 0 1 TMEM131L chr4:154517537 5'GT 154517537 Upstream 72bp 27168 chr1 11898421 11898421 1 + C T COAD 11898422 + 11898402 11898442 41 AGCCGCGCCTCTCCTATGCCGAGATGGCCGAGGACTACCCG AGCCGCGCCTCTCCTATGCTGAGATGGCCGAGGACTACCCG < 41bp 0.510379761376521 0.71939084718926 NA NA prediction 0.418022171625478 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898422 chr1:11898421 synonymous SNV . 0 20 hm7G_associated_SNPs_29729 0 0 1 0 2 CLCN6 chr1:11898392 3'AG 11898392 Downstream 30bp 27169 chr1 11898421 11898421 1 + C T COAD 11898422 + 11898402 11898442 41 AGCCGCGCCTCTCCTATGCCGAGATGGCCGAGGACTACCCG AGCCGCGCCTCTCCTATGCTGAGATGGCCGAGGACTACCCG < 41bp 0.510379761376521 0.71939084718926 NA NA prediction 0.418022171625478 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11898422 chr1:11898421 synonymous SNV . 0 20 hm7G_associated_SNPs_29729 0 0 1 0 2 CLCN6 chr1:11898499 5'GT 11898499 Upstream 79bp 27170 chr18 55021680 55021680 1 + C T ESCA 55021681 + 55021661 55021701 41 CCGTCATTCGTGCCCATTACGAATTCTCTCACCCAGGAACT CCGTCATTCGTGCCCATTATGAATTCTCTCACCCAGGAACT < 41bp 0.528714757212032 0.737722801639808 NA NA prediction 0.418016088855552 Functional Gain - ST8SIA3 ENSG00000177511 CDS Human protein_coding chr18:55021681 chr18:55021680 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_29731 0 0 0 0 2 ST8SIA3 chr18:55021633 3'AG 55021633 Downstream 48bp 27171 chr18 55021680 55021680 1 + C T ESCA 55021681 + 55021661 55021701 41 CCGTCATTCGTGCCCATTACGAATTCTCTCACCCAGGAACT CCGTCATTCGTGCCCATTATGAATTCTCTCACCCAGGAACT < 41bp 0.528714757212032 0.737722801639808 NA NA prediction 0.418016088855552 Functional Gain - ST8SIA3 ENSG00000177511 CDS Human protein_coding chr18:55021681 chr18:55021680 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_29731 0 0 0 0 2 ST8SIA3 chr18:55021755 5'GT 55021755 Upstream 76bp 27172 chr8 22464459 22464459 1 + G A UCEC 22464460 + 22464440 22464480 41 TGCCCCAGCTGGGTGAGAAGGTGCTGGTGAAGGCTGCATAC TGCCCCAGCTGGGTGAGAAAGTGCTGGTGAAGGCTGCATAC < 41bp 0.509437434366102 0.718445295521905 NA NA prediction 0.418015722311605 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22464460 chr8:22464459 synonymous SNV . 0 20 hm7G_associated_SNPs_29732 0 0 1 0 1 CCAR2 chr8:22464537 5'GT 22464537 Upstream 79bp 27173 chr14 73637541 73637541 1 + C T STAD 73637542 + 73637522 73637562 41 GCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGC GCAGGAGCACAACGACAGATGGAGCCTTGGCCACCCTGAGC < 41bp 0.516852990949161 0.725857451630116 NA NA prediction 0.41800892136191 Functional Gain - PSEN1 ENSG00000080815 CDS Human protein_coding chr14:73637542 chr14:73637541 nonsynonymous SNV 0.044 3 20 hm7G_associated_SNPs_29736 0 0 1 0 1 PSEN1 chr14:73637505 3'AG 73637505 Downstream 37bp 27174 chr1 167086717 167086717 1 + C T UCEC 167086718 + 167086698 167086738 41 CTGTGTCCTGGACCTACAGCGGGCCCTGGTTCAGGATCGCC CTGTGTCCTGGACCTACAGTGGGCCCTGGTTCAGGATCGCC < 41bp 0.496198431765478 0.709001390475949 NA NA prediction 0.418002780951899 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167086718 chr1:167086717 nonsynonymous SNV 0.366 4 20 hm7G_associated_SNPs_29737 0 0 0 0 1 DUSP27 chr1:167086796 5'GT 167086796 Upstream 80bp 27175 chr2 242140720 242140720 1 + G A rs144166359 242140721 + 242140701 242140741 41 ACATGCCCACAGCTTCCTCGGGAGTGACAACCAGGACACCT ACATGCCCACAGCTTCCTCAGGAGTGACAACCAGGACACCT < 41bp 0.489273822839213 0.7089998284213 NA NA prediction 0.417999656842599 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242140721 chr2:242140720 nonsynonymous SNV 0.340 1 20 hm7G_associated_SNPs_29738 0 0 0 0 2 ANO7 chr2:242140713 3'AG 242140713 Downstream 8bp 27176 chr2 242140720 242140720 1 + G A rs144166359 242140721 + 242140701 242140741 41 ACATGCCCACAGCTTCCTCGGGAGTGACAACCAGGACACCT ACATGCCCACAGCTTCCTCAGGAGTGACAACCAGGACACCT < 41bp 0.489273822839213 0.7089998284213 NA NA prediction 0.417999656842599 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242140721 chr2:242140720 nonsynonymous SNV 0.340 1 20 hm7G_associated_SNPs_29738 0 0 0 0 2 ANO7 chr2:242140770 5'GT 242140770 Upstream 51bp 27177 chr17 7846798 7846798 1 + G A STAD 7846799 + 7846779 7846819 41 AGCGGCTGGCGCAGGCTCAGGAGAGCAGCCTACGGCAAGCA AGCGGCTGGCGCAGGCTCAAGAGAGCAGCCTACGGCAAGCA < 41bp 0.493506441844985 0.708999187549693 NA NA prediction 0.417998375099385 Functional Gain - CNTROB ENSG00000170037 CDS Human protein_coding chr17:7846799 chr17:7846798 synonymous SNV . 0 20 hm7G_associated_SNPs_29739 0 0 0 0 2 CNTROB chr17:7846709 3'AG 7846709 Downstream 90bp 27178 chr17 7846798 7846798 1 + G A STAD 7846799 + 7846779 7846819 41 AGCGGCTGGCGCAGGCTCAGGAGAGCAGCCTACGGCAAGCA AGCGGCTGGCGCAGGCTCAAGAGAGCAGCCTACGGCAAGCA < 41bp 0.493506441844985 0.708999187549693 NA NA prediction 0.417998375099385 Functional Gain - CNTROB ENSG00000170037 CDS Human protein_coding chr17:7846799 chr17:7846798 synonymous SNV . 0 20 hm7G_associated_SNPs_29739 0 0 0 0 2 CNTROB chr17:7846842 5'GT 7846842 Upstream 45bp 27179 chr9 139233059 139233059 1 + C T UCEC 139233060 + 139233040 139233080 41 AGGGACCAGGCAGTGGAGGCGCAGGCCTGCTACAGTCTGGG AGGGACCAGGCAGTGGAGGTGCAGGCCTGCTACAGTCTGGG < 41bp 0.51506703613821 0.724064408888558 NA NA prediction 0.417994745500696 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139233060 chr9:139233059 nonsynonymous SNV 0.488 4 20 hm7G_associated_SNPs_29741 0 0 1 0 1 GPSM1 chr9:139233012 3'AG 139233012 Downstream 48bp 27180 chr3 51897098 51897098 1 + G T BLCA 51897099 + 51897079 51897119 41 TGCTGCATGCAGCCCTCAGGGCCTGGATAATTCAGTGCTGG TGCTGCATGCAGCCCTCAGTGCCTGGATAATTCAGTGCTGG < 41bp 0.378711219773521 0.708994185163043 NA NA prediction 0.417988370326086 Functional Gain - IQCF2 ENSG00000184345 CDS Human protein_coding chr3:51897099 chr3:51897098 nonsynonymous SNV 0.975 0 20 hm7G_associated_SNPs_29744 0 0 0 2 1 IQCF2 chr3:51897003 3'AG 51897003 Downstream 96bp 27181 chr11 10786160 10786160 1 + C T UCEC 10786161 + 10786141 10786181 41 ACGATGAGCATTACTATAACGCCATTTCCGTTACCACGTCA ACGATGAGCATTACTATAATGCCATTTCCGTTACCACGTCA < 41bp 0.492143698085198 0.708991389054458 NA NA prediction 0.417982778108916 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10786161 chr11:10786160 synonymous SNV . 0 20 hm7G_associated_SNPs_29745 0 0 1 0 1 CTR9 chr11:10786095 3'AG 10786095 Downstream 66bp 27182 chr8 73480508 73480508 1 + G T HNSC 73480509 + 73480489 73480529 41 GATAAAAGGAAGAAACTGTGGGACTTGCTGGAGAAACCTAA GATAAAAGGAAGAAACTGTTGGACTTGCTGGAGAAACCTAA < 41bp 0.378584525370197 0.708990722342086 NA NA prediction 0.417981444684172 Functional Gain - KCNB2 ENSG00000182674 CDS Human protein_coding chr8:73480509 chr8:73480508 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_29746 0 0 0 0 1 KCNB2 chr8:73480548 5'GT 73480548 Upstream 41bp 27183 chr21 45499951 45499951 1 + C T STAD 45499952 + 45499932 45499972 41 CCACCTCACTGAAGAGGAGCGCAAGCACTTCTGCCAGGAGA CCACCTCACTGAAGAGGAGTGCAAGCACTTCTGCCAGGAGA < 41bp 0.527796730077034 0.736787401491641 NA NA prediction 0.417981342829214 Functional Gain - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45499952 chr21:45499951 nonsynonymous SNV 0.964 3 20 hm7G_associated_SNPs_29747 0 0 1 0 2 TRAPPC10 chr21:45499896 3'AG 45499896 Downstream 56bp 27184 chr21 45499951 45499951 1 + C T STAD 45499952 + 45499932 45499972 41 CCACCTCACTGAAGAGGAGCGCAAGCACTTCTGCCAGGAGA CCACCTCACTGAAGAGGAGTGCAAGCACTTCTGCCAGGAGA < 41bp 0.527796730077034 0.736787401491641 NA NA prediction 0.417981342829214 Functional Gain - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45499952 chr21:45499951 nonsynonymous SNV 0.964 3 20 hm7G_associated_SNPs_29747 0 0 1 0 2 TRAPPC10 chr21:45500008 5'GT 45500008 Upstream 58bp 27185 chr14 100363529 100363529 1 + C T STAD 100363530 + 100363510 100363550 41 AACAACCTGTACTTGCTTCCGACGGGAGAGACCGTCTACTT AACAACCTGTACTTGCTTCTGACGGGAGAGACCGTCTACTT < 41bp 0.519461833310978 0.728451620678343 NA NA prediction 0.417979574734729 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100363530 chr14:100363529 nonsynonymous SNV 0.934 4 20 hm7G_associated_SNPs_29748 0 0 0 0 1 EML1 chr14:100363482 3'AG 100363482 Downstream 48bp 27186 chr7 128850908 128850908 1 + G T LUSC 128850909 + 128850889 128850929 41 TCCTGCAGAACCCAGGCCAGGAGCTGTCCTTCAGCATGCAC TCCTGCAGAACCCAGGCCATGAGCTGTCCTTCAGCATGCAC < 41bp 0.352939335460061 0.70898391427691 NA NA prediction 0.41796782855382 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128850909 chr7:128850908 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_29749 0 0 1 0 1 SMO chr7:128850954 5'GT 128850954 Upstream 47bp 27187 chr17 79860389 79860389 1 + G A rs188270141 79860390 + 79860370 79860410 41 GAGCTGCAACTGCACCCCAGGCTGCGGAGCCTCGTGAGTCC GAGCTGCAACTGCACCCCAAGCTGCGGAGCCTCGTGAGTCC < 41bp 0.547401265640017 0.756383849504594 NA NA prediction 0.417965167729153 Functional Gain - NPB ENSG00000183979 CDS Human protein_coding chr17:79860390 chr17:79860389 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_29750 0 0 0 0 1 NPB chr17:79860402 5'GT 79860402 Upstream 14bp 27188 chr3 71803848 71803848 1 - C T rs571324007 71803847 - 71803827 71803867 41 CGGCGGGCACCAGGCGCGCGGGCCGCATCTTGCGGCGGTCG CGGCGGGCACCAGGCGCGCAGGCCGCATCTTGCGGCGGTCG < 41bp 0.525354512721667 0.734334632793359 NA NA prediction 0.417960240143384 Functional Gain - GPR27 ENSG00000170837 CDS Human protein_coding chr3:71803847 chr3:71803848 synonymous SNV . 0 20 hm7G_associated_SNPs_29751 0 0 0 0 1 GPR27 chr3:71803795 5'GT 71803795 Upstream 54bp 27189 chr7 95157180 95157180 1 + G A UCEC 95157181 + 95157161 95157201 41 AGGAGACGCCCTTGCACACGGCTGCCCACTTCGGCCTTTCG AGGAGACGCCCTTGCACACAGCTGCCCACTTCGGCCTTTCG < 41bp 0.50820659177726 0.717185803984152 NA NA prediction 0.417958424413785 Functional Gain - ASB4 ENSG00000005981 CDS Human protein_coding chr7:95157181 chr7:95157180 synonymous SNV . 0 20 hm7G_associated_SNPs_29752 0 0 0 0 1 ASB4 chr7:95157125 3'AG 95157125 Downstream 56bp 27190 chr6 158497732 158497732 1 + C T UCEC 158497733 + 158497713 158497753 41 ACGTTGGCTCAGCCGCCTACGATACAAGCGACAAATGCCGC ACGTTGGCTCAGCCGCCTATGATACAAGCGACAAATGCCGC < 41bp 0.531727020281843 0.740703464415468 NA NA prediction 0.417952888267251 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497733 chr6:158497732 synonymous SNV . 0 20 hm7G_associated_SNPs_29753 0 0 1 0 2 SYNJ2 chr6:158497658 3'AG 158497658 Downstream 75bp 27191 chr6 158497732 158497732 1 + C T UCEC 158497733 + 158497713 158497753 41 ACGTTGGCTCAGCCGCCTACGATACAAGCGACAAATGCCGC ACGTTGGCTCAGCCGCCTATGATACAAGCGACAAATGCCGC < 41bp 0.531727020281843 0.740703464415468 NA NA prediction 0.417952888267251 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497733 chr6:158497732 synonymous SNV . 0 20 hm7G_associated_SNPs_29753 0 0 1 0 2 SYNJ2 chr6:158497814 5'GT 158497814 Upstream 83bp 27192 chr1 175087870 175087870 1 + G A SKCM 175087871 + 175087851 175087891 41 GAGCAGCACTGTCCTGACGGGCCTGAGGCCGGGCATGGAGT GAGCAGCACTGTCCTGACGAGCCTGAGGCCGGGCATGGAGT < 41bp 0.534952675315701 0.743928660988431 NA NA prediction 0.41795197134546 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175087871 chr1:175087870 nonsynonymous SNV 0.337 3 20 hm7G_associated_SNPs_29754 0 0 0 0 1 TNN chr1:175087960 5'GT 175087960 Upstream 91bp 27193 chr5 153765910 153765910 1 + C T UCEC 153765911 + 153765891 153765931 41 TGGACTGTTCGCCGTGGATCGGAAGTGGTTCTGGGAACTCG TGGACTGTTCGCCGTGGATTGGAAGTGGTTCTGGGAACTCG < 41bp 0.503197454007986 0.712171460663094 NA NA prediction 0.417948013310217 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153765911 chr5:153765910 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_29755 0 0 1 0 2 GALNT10 chr5:153765873 3'AG 153765873 Downstream 38bp 27194 chr5 153765910 153765910 1 + C T UCEC 153765911 + 153765891 153765931 41 TGGACTGTTCGCCGTGGATCGGAAGTGGTTCTGGGAACTCG TGGACTGTTCGCCGTGGATTGGAAGTGGTTCTGGGAACTCG < 41bp 0.503197454007986 0.712171460663094 NA NA prediction 0.417948013310217 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153765911 chr5:153765910 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_29755 0 0 1 0 2 GALNT10 chr5:153765990 5'GT 153765990 Upstream 81bp 27195 chr17 76167062 76167062 1 + C T UCEC 76167063 + 76167043 76167083 41 CGGCCTTCTTCTTGGTGGTCGACGCGTATTTCCCCCAGATC CGGCCTTCTTCTTGGTGGTTGACGCGTATTTCCCCCAGATC < 41bp 0.508409871792316 0.717380407332258 NA NA prediction 0.417941071079884 Functional Gain - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167063 chr17:76167062 synonymous SNV . 0 20 hm7G_associated_SNPs_29756 0 0 1 0 1 SYNGR2 chr17:76167135 5'GT 76167135 Upstream 74bp 27196 chr4 5798886 5798886 1 + G A COAD 5798887 + 5798867 5798907 41 CACCTCCTGCAGGAGCTGCGGGAACAGCGTGCACTGGAGCA CACCTCCTGCAGGAGCTGCAGGAACAGCGTGCACTGGAGCA < 41bp 0.492548024629849 0.708969760666055 NA NA prediction 0.41793952133211 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5798887 chr4:5798886 nonsynonymous SNV 0.106 0 20 hm7G_associated_SNPs_29757 0 0 0 0 1 EVC chr4:5798959 5'GT 5798959 Upstream 74bp 27197 chr3 9786158 9786158 1 + C T LUSC 9786159 + 9786139 9786179 41 CCAGTTCGAGCTCAGACAGCGACAGTGATAAGTCCACAGAA CCAGTTCGAGCTCAGACAGTGACAGTGATAAGTCCACAGAA < 41bp 0.503201097508274 0.712168742085492 NA NA prediction 0.417935289154437 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9786159 chr3:9786158 synonymous SNV . 0 20 hm7G_associated_SNPs_29758 0 0 0 0 1 BRPF1 chr3:9786192 5'GT 9786192 Upstream 35bp 27198 chr8 86354361 86354361 1 + G T LUSC 86354362 + 86354342 86354382 41 CCAGTTTCATCTTCACTGGGGCTCTTCGGATGATCATGGCT CCAGTTTCATCTTCACTGGTGCTCTTCGGATGATCATGGCT < 41bp 0.704713731772385 0.913680806728679 NA NA prediction 0.417934149912587 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354362 chr8:86354361 nonsynonymous SNV 0.943 4 20 hm7G_associated_SNPs_29759 0 0 0 0 2 CA3 chr8:86354302 3'AG 86354302 Downstream 60bp 27199 chr8 86354361 86354361 1 + G T LUSC 86354362 + 86354342 86354382 41 CCAGTTTCATCTTCACTGGGGCTCTTCGGATGATCATGGCT CCAGTTTCATCTTCACTGGTGCTCTTCGGATGATCATGGCT < 41bp 0.704713731772385 0.913680806728679 NA NA prediction 0.417934149912587 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86354362 chr8:86354361 nonsynonymous SNV 0.943 4 20 hm7G_associated_SNPs_29759 0 0 0 0 2 CA3 chr8:86354420 5'GT 86354420 Upstream 60bp 27200 chr6 36070382 36070382 1 + C T UCEC 36070383 + 36070363 36070403 41 CAGTCTTTGACTCAGATGCCGAAGATGAACTTTGCGAATGT CAGTCTTTGACTCAGATGCTGAAGATGAACTTTGCGAATGT < 41bp 0.512021402083073 0.720988329327962 NA NA prediction 0.417933854489777 Functional Gain - MAPK14 ENSG00000112062 CDS Human protein_coding chr6:36070383 chr6:36070382 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29760 0 0 1 0 2 MAPK14 chr6:36070348 3'AG 36070348 Downstream 35bp 27201 chr6 36070382 36070382 1 + C T UCEC 36070383 + 36070363 36070403 41 CAGTCTTTGACTCAGATGCCGAAGATGAACTTTGCGAATGT CAGTCTTTGACTCAGATGCTGAAGATGAACTTTGCGAATGT < 41bp 0.512021402083073 0.720988329327962 NA NA prediction 0.417933854489777 Functional Gain - MAPK14 ENSG00000112062 CDS Human protein_coding chr6:36070383 chr6:36070382 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29760 0 0 1 0 2 MAPK14 chr6:36070426 5'GT 36070426 Upstream 45bp 27202 chr12 51126195 51126195 1 + C T STAD 51126196 + 51126176 51126216 41 CGGACCTGTGTGGTGGTGGCGGAGGAGAGGCCCCGCGTTGC CGGACCTGTGTGGTGGTGGTGGAGGAGAGGCCCCGCGTTGC < 41bp 0.512414747721235 0.721374710049718 NA NA prediction 0.417919924656967 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51126196 chr12:51126195 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29762 0 0 1 0 1 DIP2B chr12:51126149 3'AG 51126149 Downstream 47bp 27203 chr7 128445894 128445894 1 + G A SKCM 128445895 + 128445875 128445915 41 GAGCAGAGGCGGCTGCAGAGGGAGCTCAAGTGTGCTCAGAA GAGCAGAGGCGGCTGCAGAAGGAGCTCAAGTGTGCTCAGAA < 41bp 0.514004238972476 0.722961130164778 NA NA prediction 0.417913782384605 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128445895 chr7:128445894 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29764 0 0 1 0 1 CCDC136 chr7:128445955 5'GT 128445955 Upstream 62bp 27204 chr16 84914162 84914162 1 + C T OV 84914163 + 84914143 84914183 41 GAACCTTCCTACTGGGCTCCGGTGTTTGGAACCAACATCTA GAACCTTCCTACTGGGCTCTGGTGTTTGGAACCAACATCTA < 41bp 0.497322107374516 0.708956037032114 NA NA prediction 0.417912074064228 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84914163 chr16:84914162 nonsynonymous SNV 0.939 3 20 hm7G_associated_SNPs_29765 0 0 0 0 2 CRISPLD2 chr16:84914115 3'AG 84914115 Downstream 48bp 27205 chr16 84914162 84914162 1 + C T OV 84914163 + 84914143 84914183 41 GAACCTTCCTACTGGGCTCCGGTGTTTGGAACCAACATCTA GAACCTTCCTACTGGGCTCTGGTGTTTGGAACCAACATCTA < 41bp 0.497322107374516 0.708956037032114 NA NA prediction 0.417912074064228 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84914163 chr16:84914162 nonsynonymous SNV 0.939 3 20 hm7G_associated_SNPs_29765 0 0 0 0 2 CRISPLD2 chr16:84914190 5'GT 84914190 Upstream 29bp 27206 chr16 56901119 56901119 1 + G A LUAD 56901120 + 56901100 56901140 41 TGCGCTTCGGCTGGGTCAAGGGGGTGATGGTGAGTGGGGTG TGCGCTTCGGCTGGGTCAAAGGGGTGATGGTGAGTGGGGTG < 41bp 0.508064659883169 0.717020174268567 NA NA prediction 0.417911028770796 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56901120 chr16:56901119 synonymous SNV . 0 20 hm7G_associated_SNPs_29766 0 0 0 0 1 SLC12A3 chr16:56901128 5'GT 56901128 Upstream 10bp 27207 chr1 32085235 32085235 1 + C T SKCM 32085236 + 32085216 32085256 41 GTGACTGCTATCTGCCTGCCGGCCAGCCTGCTGGTGGACAT GTGACTGCTATCTGCCTGCTGGCCAGCCTGCTGGTGGACAT < 41bp 0.525621952090537 0.734575895842373 NA NA prediction 0.417907887503673 Functional Gain - HCRTR1 ENSG00000121764 CDS Human protein_coding chr1:32085236 chr1:32085235 nonsynonymous SNV 0.585 4 20 hm7G_associated_SNPs_29767 0 0 0 0 1 HCRTR1 chr1:32085311 5'GT 32085311 Upstream 77bp 27208 chr16 58541899 58541899 1 + G T LUAD 58541900 + 58541880 58541920 41 AATGCACCCGCTGAGGACGGGGTGGTAAGTGAGGGGCTGTG AATGCACCCGCTGAGGACGTGGTGGTAAGTGAGGGGCTGTG < 41bp 0.69228516772441 0.901235938041773 NA NA prediction 0.417901540634725 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58541900 chr16:58541899 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_29769 0 0 0 0 2 NDRG4 chr16:58541852 3'AG 58541852 Downstream 48bp 27209 chr16 58541899 58541899 1 + G T LUAD 58541900 + 58541880 58541920 41 AATGCACCCGCTGAGGACGGGGTGGTAAGTGAGGGGCTGTG AATGCACCCGCTGAGGACGTGGTGGTAAGTGAGGGGCTGTG < 41bp 0.69228516772441 0.901235938041773 NA NA prediction 0.417901540634725 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58541900 chr16:58541899 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_29769 0 0 0 0 2 NDRG4 chr16:58541903 5'GT 58541903 Upstream 5bp 27210 chr4 69334650 69334650 1 + G T TGCT 69334651 + 69334631 69334671 41 AAGAATTTGTCAAGTCTCAGGTTATCAAGTTCAGGTATGTA AAGAATTTGTCAAGTCTCATGTTATCAAGTTCAGGTATGTA < 41bp 0.397565119184501 0.708949782089747 NA NA prediction 0.417899564179494 Functional Gain - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69334651 chr4:69334650 nonsynonymous SNV 0.840 0 20 hm7G_associated_SNPs_29770 0 0 0 0 2 TMPRSS11E chr4:69334597 3'AG 69334597 Downstream 54bp 27211 chr4 69334650 69334650 1 + G T TGCT 69334651 + 69334631 69334671 41 AAGAATTTGTCAAGTCTCAGGTTATCAAGTTCAGGTATGTA AAGAATTTGTCAAGTCTCATGTTATCAAGTTCAGGTATGTA < 41bp 0.397565119184501 0.708949782089747 NA NA prediction 0.417899564179494 Functional Gain - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69334651 chr4:69334650 nonsynonymous SNV 0.840 0 20 hm7G_associated_SNPs_29770 0 0 0 0 2 TMPRSS11E chr4:69334664 5'GT 69334664 Upstream 15bp 27212 chr10 105203013 105203013 1 + C T UCEC 105203014 + 105202994 105203034 41 CCTGACCAAGGTCTTTGAGCGAGCCGTGCAGTACAACGAGC CCTGACCAAGGTCTTTGAGTGAGCCGTGCAGTACAACGAGC < 41bp 0.515431147509903 0.724378504963053 NA NA prediction 0.4178947149063 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203014 chr10:105203013 stopgain 0.968 1 20 hm7G_associated_SNPs_29772 0 0 1 0 2 PDCD11 chr10:105202922 3'AG 105202922 Downstream 92bp 27213 chr10 105203013 105203013 1 + C T UCEC 105203014 + 105202994 105203034 41 CCTGACCAAGGTCTTTGAGCGAGCCGTGCAGTACAACGAGC CCTGACCAAGGTCTTTGAGTGAGCCGTGCAGTACAACGAGC < 41bp 0.515431147509903 0.724378504963053 NA NA prediction 0.4178947149063 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105203014 chr10:105203013 stopgain 0.968 1 20 hm7G_associated_SNPs_29772 0 0 1 0 2 PDCD11 chr10:105203090 5'GT 105203090 Upstream 78bp 27214 chr21 33296873 33296873 1 + C T GBM 33296874 + 33296854 33296894 41 TCAGATCCAGCAGATGATCCGCCACCCCAATATCACTCAGC TCAGATCCAGCAGATGATCTGCCACCCCAATATCACTCAGC < 41bp 0.493076367001308 0.708946380464721 NA NA prediction 0.417892760929442 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33296874 chr21:33296873 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_29773 0 0 0 0 1 HUNK chr21:33296780 3'AG 33296780 Downstream 94bp 27215 chr10 104486810 104486810 1 + G A UCEC 104486811 + 104486791 104486831 41 CCAAGAAGCTGTATGACTCGGCCTTCCACCCCGACACTGGG CCAAGAAGCTGTATGACTCAGCCTTCCACCCCGACACTGGG < 41bp 0.542861859533227 0.751804646341713 NA NA prediction 0.417885573616972 Functional Gain - SFXN2 ENSG00000156398 CDS Human protein_coding chr10:104486811 chr10:104486810 synonymous SNV . 0 20 hm7G_associated_SNPs_29775 0 0 1 0 1 SFXN2 chr10:104486744 3'AG 104486744 Downstream 67bp 27216 chr9 117063971 117063971 1 + G A STAD 117063972 + 117063952 117063992 41 GTTCCCCCAGGGTCCTCCCGGCCCCAGAGGGCGGCCCGGCC GTTCCCCCAGGGTCCTCCCAGCCCCAGAGGGCGGCCCGGCC < 41bp 0.498732522645562 0.708936682341164 NA NA prediction 0.417873364682328 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117063972 chr9:117063971 nonsynonymous SNV 0.434 3 20 hm7G_associated_SNPs_29776 0 0 1 0 1 COL27A1 chr9:117063997 5'GT 117063997 Upstream 27bp 27217 chr5 176003005 176003005 1 + G T CESC 176003006 + 176002986 176003026 41 GAGGCCAAGGTGAGCATCTGGGTGACAGTGAGAGTGATGGA GAGGCCAAGGTGAGCATCTTGGTGACAGTGAGAGTGATGGA < 41bp 0.701560506220131 0.910495993256949 NA NA prediction 0.417870974073636 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176003006 chr5:176003005 nonsynonymous SNV 0.682 0 20 hm7G_associated_SNPs_29777 0 0 0 0 1 CDHR2 chr5:176002953 3'AG 176002953 Downstream 53bp 27218 chrX 106097473 106097473 1 + C T COAD 106097474 + 106097454 106097494 41 TATACATAGTATGCGCTGTCGAAATAGGTTGTATGTGATAC TATACATAGTATGCGCTGTTGAAATAGGTTGTATGTGATAC < 41bp 0.499554644257181 0.708935323165062 NA NA prediction 0.417870646330123 Functional Gain - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106097474 chrX:106097473 stopgain 1.000 1 20 hm7G_associated_SNPs_29778 0 0 1 0 2 TBC1D8B chrX:106097428 3'AG 106097428 Downstream 46bp 27219 chrX 106097473 106097473 1 + C T COAD 106097474 + 106097454 106097494 41 TATACATAGTATGCGCTGTCGAAATAGGTTGTATGTGATAC TATACATAGTATGCGCTGTTGAAATAGGTTGTATGTGATAC < 41bp 0.499554644257181 0.708935323165062 NA NA prediction 0.417870646330123 Functional Gain - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106097474 chrX:106097473 stopgain 1.000 1 20 hm7G_associated_SNPs_29778 0 0 1 0 2 TBC1D8B chrX:106097526 5'GT 106097526 Upstream 54bp 27220 chr21 17203752 17203752 1 + C T rs143731450 17203753 + 17203733 17203773 41 TACATGCCGTTTTAGTTCACGAAGGCCAAGCTAATGCTGGG TACATGCCGTTTTAGTTCATGAAGGCCAAGCTAATGCTGGG < 41bp 0.497671418371041 0.708931861868958 NA NA prediction 0.417863723737916 Functional Gain - USP25 ENSG00000155313 CDS Human protein_coding chr21:17203753 chr21:17203752 synonymous SNV . 0 20 hm7G_associated_SNPs_29781 0 0 1 0 1 USP25 chr21:17203720 3'AG 17203720 Downstream 33bp 27221 chr16 57685120 57685120 1 + G A UCEC 57685121 + 57685101 57685141 41 TGCCTCCTCAGGTGCCCACGGCAGGGGCCACAGGGAAGACT TGCCTCCTCAGGTGCCCACAGCAGGGGCCACAGGGAAGACT < 41bp 0.484703933559013 0.708928185300881 NA NA prediction 0.417856370601762 Functional Gain - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685121 chr16:57685120 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_29782 0 0 1 0 2 ADGRG1 chr16:57685097 3'AG 57685097 Downstream 24bp 27222 chr16 57685120 57685120 1 + G A UCEC 57685121 + 57685101 57685141 41 TGCCTCCTCAGGTGCCCACGGCAGGGGCCACAGGGAAGACT TGCCTCCTCAGGTGCCCACAGCAGGGGCCACAGGGAAGACT < 41bp 0.484703933559013 0.708928185300881 NA NA prediction 0.417856370601762 Functional Gain - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57685121 chr16:57685120 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_29782 0 0 1 0 2 ADGRG1 chr16:57685112 3'AG 57685112 Downstream 9bp 27223 chr8 22020679 22020679 1 + C T rs79866047 22020680 + 22020660 22020700 41 CCACTGCCACCTTCTCCATCGGCTCCACTGGCCTCGTGGTG CCACTGCCACCTTCTCCATTGGCTCCACTGGCCTCGTGGTG < 41bp 0.535808408616274 0.744735989496671 NA NA prediction 0.417855161760795 Functional Gain - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020680 chr8:22020679 synonymous SNV . 0 20 hm7G_associated_SNPs_29783 2 0 0 0 2 SFTPC chr8:22020593 3'AG 22020593 Downstream 87bp 27224 chr8 22020679 22020679 1 + C T rs79866047 22020680 + 22020660 22020700 41 CCACTGCCACCTTCTCCATCGGCTCCACTGGCCTCGTGGTG CCACTGCCACCTTCTCCATTGGCTCCACTGGCCTCGTGGTG < 41bp 0.535808408616274 0.744735989496671 NA NA prediction 0.417855161760795 Functional Gain - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020680 chr8:22020679 synonymous SNV . 0 20 hm7G_associated_SNPs_29783 2 0 0 0 2 SFTPC chr8:22020715 5'GT 22020715 Upstream 37bp 27225 chr8 56723502 56723502 1 + G T THCA 56723503 + 56723483 56723523 41 CAATAATGCAGAAGTTTATGGGATAGCAGATAAGATAGAGT CAATAATGCAGAAGTTTATTGGATAGCAGATAAGATAGAGT < 41bp 0.693981378958983 0.902900451362404 NA NA prediction 0.417838144806842 Functional Gain - TGS1 ENSG00000137574 CDS Human protein_coding chr8:56723503 chr8:56723502 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_29784 0 0 1 0 1 TGS1 chr8:56723440 3'AG 56723440 Downstream 63bp 27226 chr22 37325581 37325581 1 + C T GBM 37325582 + 37325562 37325602 41 GTTTGAGGTGGTCTACAAGCGGCTTCAGGACTCTTGGGAGG GTTTGAGGTGGTCTACAAGTGGCTTCAGGACTCTTGGGAGG < 41bp 0.510306822420874 0.719222875026119 NA NA prediction 0.417832105210489 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37325582 chr22:37325581 nonsynonymous SNV 0.235 3 20 hm7G_associated_SNPs_29786 0 0 0 0 1 CSF2RB chr22:37325601 5'GT 37325601 Upstream 21bp 27227 chr1 9781210 9781210 1 + C T COAD 9781211 + 9781191 9781231 41 TACCTGCTGTGCTCCTGGCCGGAGCTGCCCGTCCTGAGCGC TACCTGCTGTGCTCCTGGCTGGAGCTGCCCGTCCTGAGCGC < 41bp 0.52813429532781 0.737049163977254 NA NA prediction 0.417829737298888 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781211 chr1:9781210 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_29787 0 0 1 0 2 PIK3CD chr1:9781185 3'AG 9781185 Downstream 26bp 27228 chr1 9781210 9781210 1 + C T COAD 9781211 + 9781191 9781231 41 TACCTGCTGTGCTCCTGGCCGGAGCTGCCCGTCCTGAGCGC TACCTGCTGTGCTCCTGGCTGGAGCTGCCCGTCCTGAGCGC < 41bp 0.52813429532781 0.737049163977254 NA NA prediction 0.417829737298888 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781211 chr1:9781210 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_29787 0 0 1 0 2 PIK3CD chr1:9781306 5'GT 9781306 Upstream 97bp 27229 chr8 28906544 28906544 1 + C T LGG 28906545 + 28906525 28906565 41 CAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCAG CAAACAGTGATGATGTCGATGGGAATGACTACTCTGAGCAG < 41bp 0.506248060275481 0.71515565524667 NA NA prediction 0.417815189942376 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906545 chr8:28906544 synonymous SNV . 0 20 hm7G_associated_SNPs_29791 0 0 1 0 4 HMBOX1 chr8:28906471 3'AG 28906471 Downstream 74bp 27230 chr8 28906544 28906544 1 + C T LGG 28906545 + 28906525 28906565 41 CAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCAG CAAACAGTGATGATGTCGATGGGAATGACTACTCTGAGCAG < 41bp 0.506248060275481 0.71515565524667 NA NA prediction 0.417815189942376 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906545 chr8:28906544 synonymous SNV . 0 20 hm7G_associated_SNPs_29791 0 0 1 0 4 HMBOX1 chr8:28906474 3'AG 28906474 Downstream 71bp 27231 chr8 28906544 28906544 1 + C T LGG 28906545 + 28906525 28906565 41 CAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCAG CAAACAGTGATGATGTCGATGGGAATGACTACTCTGAGCAG < 41bp 0.506248060275481 0.71515565524667 NA NA prediction 0.417815189942376 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906545 chr8:28906544 synonymous SNV . 0 20 hm7G_associated_SNPs_29791 0 0 1 0 4 HMBOX1 chr8:28906477 3'AG 28906477 Downstream 68bp 27232 chr8 28906544 28906544 1 + C T LGG 28906545 + 28906525 28906565 41 CAAACAGTGATGATGTCGACGGGAATGACTACTCTGAGCAG CAAACAGTGATGATGTCGATGGGAATGACTACTCTGAGCAG < 41bp 0.506248060275481 0.71515565524667 NA NA prediction 0.417815189942376 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28906545 chr8:28906544 synonymous SNV . 0 20 hm7G_associated_SNPs_29791 0 0 1 0 4 HMBOX1 chr8:28906565 5'GT 28906565 Upstream 22bp 27233 chr12 110019233 110019233 1 + G A rs34368092 110019234 + 110019214 110019254 41 TGGATATCGTAGTGTGGTCGGAGCTGCCCCCCGGGGCGGGC TGGATATCGTAGTGTGGTCAGAGCTGCCCCCCGGGGCGGGC < 41bp 0.532641604904678 0.741548770636213 NA NA prediction 0.41781433146307 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110019234 chr12:110019233 synonymous SNV . 0 20 hm7G_associated_SNPs_29792 3 0 1 1 1 MVK chr12:110019200 3'AG 110019200 Downstream 34bp 27234 chr5 140858107 140858107 1 + C T SKCM 140858108 + 140858088 140858128 41 GTGCAGAGAGCGCCCCTCCCGGACAGGTAAGGTTTAGCAAG GTGCAGAGAGCGCCCCTCCTGGACAGGTAAGGTTTAGCAAG < 41bp 0.499738122652452 0.70890623538141 NA NA prediction 0.417812470762819 Functional Gain - PCDHGC3 ENSG00000240184 CDS Human protein_coding chr5:140858108 chr5:140858107 synonymous SNV . 0 20 hm7G_associated_SNPs_29793 0 0 0 0 1 PCDHGC3 chr5:140858113 5'GT 140858113 Upstream 7bp 27235 chr19 58846467 58846467 1 + C T CESC 58846468 + 58846448 58846488 41 CTGGAGCAGTTCCTGGGTGCGCTGCCCCCAGAGATCCAAGC CTGGAGCAGTTCCTGGGTGTGCTGCCCCCAGAGATCCAAGC < 41bp 0.492364584832357 0.708905732456763 NA NA prediction 0.417811464913526 Functional Gain - ZSCAN22 ENSG00000182318 CDS Human protein_coding chr19:58846468 chr19:58846467 nonsynonymous SNV 0.802 0 20 hm7G_associated_SNPs_29794 0 0 0 0 1 ZSCAN22 chr19:58846555 5'GT 58846555 Upstream 89bp 27236 chr7 99702533 99702533 1 + C T STAD 99702534 + 99702514 99702554 41 GGATGTGCAGGGAGAGATTCGGCTCAAGAGCTTCCTTCCTA GGATGTGCAGGGAGAGATTTGGCTCAAGAGCTTCCTTCCTA < 41bp 0.521336275323921 0.730241008527439 NA NA prediction 0.417809466407037 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702534 chr7:99702533 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29795 0 0 1 0 2 AP4M1 chr7:99702497 3'AG 99702497 Downstream 37bp 27237 chr7 99702533 99702533 1 + C T STAD 99702534 + 99702514 99702554 41 GGATGTGCAGGGAGAGATTCGGCTCAAGAGCTTCCTTCCTA GGATGTGCAGGGAGAGATTTGGCTCAAGAGCTTCCTTCCTA < 41bp 0.521336275323921 0.730241008527439 NA NA prediction 0.417809466407037 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99702534 chr7:99702533 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29795 0 0 1 0 2 AP4M1 chr7:99702563 5'GT 99702563 Upstream 31bp 27238 chr22 31523492 31523492 1 + G A rs150180341 31523493 + 31523473 31523513 41 TCCAGCAGTTCCAAGGGCCGGGCGCACAGGGCATCCTGGAT TCCAGCAGTTCCAAGGGCCAGGCGCACAGGGCATCCTGGAT < 41bp 0.530374171256816 0.739277603748563 NA NA prediction 0.417806864983493 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31523493 chr22:31523492 synonymous SNV . 0 20 hm7G_associated_SNPs_29797 0 0 0 0 1 INPP5J chr22:31523518 5'GT 31523518 Upstream 27bp 27239 chr3 47446239 47446239 1 + C T rs149197378 47446240 + 47446220 47446260 41 AGTCGGGTCCCCATGGGCTCGGGCCAGGAGGCCGCTGTCCC AGTCGGGTCCCCATGGGCTTGGGCCAGGAGGCCGCTGTCCC < 41bp 0.500857516403528 0.709759692814948 NA NA prediction 0.417804352822841 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47446240 chr3:47446239 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_29798 0 0 1 0 2 PTPN23 chr3:47446142 3'AG 47446142 Downstream 98bp 27240 chr3 47446239 47446239 1 + C T rs149197378 47446240 + 47446220 47446260 41 AGTCGGGTCCCCATGGGCTCGGGCCAGGAGGCCGCTGTCCC AGTCGGGTCCCCATGGGCTTGGGCCAGGAGGCCGCTGTCCC < 41bp 0.500857516403528 0.709759692814948 NA NA prediction 0.417804352822841 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47446240 chr3:47446239 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_29798 0 0 1 0 2 PTPN23 chr3:47446269 5'GT 47446269 Upstream 31bp 27241 chr1 53543413 53543413 1 + C T HNSC 53543414 + 53543394 53543434 41 GCGAGCTGAGCAGCCTGCGCGAGCTATACCTGCAGAACAAC GCGAGCTGAGCAGCCTGCGTGAGCTATACCTGCAGAACAAC < 41bp 0.503065766488992 0.711963074803476 NA NA prediction 0.417794616628967 Functional Gain - PODN ENSG00000174348 CDS Human protein_coding chr1:53543414 chr1:53543413 synonymous SNV . 0 20 hm7G_associated_SNPs_29799 0 0 0 0 2 PODN chr1:53543357 3'AG 53543357 Downstream 57bp 27242 chr1 53543413 53543413 1 + C T HNSC 53543414 + 53543394 53543434 41 GCGAGCTGAGCAGCCTGCGCGAGCTATACCTGCAGAACAAC GCGAGCTGAGCAGCCTGCGTGAGCTATACCTGCAGAACAAC < 41bp 0.503065766488992 0.711963074803476 NA NA prediction 0.417794616628967 Functional Gain - PODN ENSG00000174348 CDS Human protein_coding chr1:53543414 chr1:53543413 synonymous SNV . 0 20 hm7G_associated_SNPs_29799 0 0 0 0 2 PODN chr1:53543472 5'GT 53543472 Upstream 60bp 27243 chr17 45914155 45914155 1 + G T UCEC 45914156 + 45914136 45914176 41 CAGGAGCTGAGCAGGCACAGGGAGCACCGGCAACAGACGGC CAGGAGCTGAGCAGGCACATGGAGCACCGGCAACAGACGGC < 41bp 0.696262486427963 0.905157644718701 NA NA prediction 0.417790316581477 Functional Gain - LRRC46 ENSG00000141294 CDS Human protein_coding chr17:45914156 chr17:45914155 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_29800 0 0 0 0 1 LRRC46 chr17:45914116 3'AG 45914116 Downstream 40bp 27244 chr12 56531397 56531397 1 + C T CESC 56531398 + 56531378 56531418 41 CAAACTAAAGTTGGCAGGACGAAGCTTCCGGAGCCATGTTG CAAACTAAAGTTGGCAGGATGAAGCTTCCGGAGCCATGTTG < 41bp 0.528666314994786 0.737559416778977 NA NA prediction 0.417786203568381 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531398 chr12:56531397 stopgain 0.994 0 20 hm7G_associated_SNPs_29801 0 0 1 0 1 ESYT1 chr12:56531459 5'GT 56531459 Upstream 63bp 27245 chr7 75912374 75912374 1 + G A STAD 75912375 + 75912355 75912395 41 TACTCGCCCATCCGCAAGCGGCGCCGGGACTCGCCAAGCTT TACTCGCCCATCCGCAAGCAGCGCCGGGACTCGCCAAGCTT < 41bp 0.48685595877716 0.708890426037555 NA NA prediction 0.417780852075109 Functional Gain - SRRM3 ENSG00000177679 CDS Human protein_coding chr7:75912375 chr7:75912374 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_29802 0 0 0 0 2 SRRM3 chr7:75912282 3'AG 75912282 Downstream 93bp 27246 chr7 75912374 75912374 1 + G A STAD 75912375 + 75912355 75912395 41 TACTCGCCCATCCGCAAGCGGCGCCGGGACTCGCCAAGCTT TACTCGCCCATCCGCAAGCAGCGCCGGGACTCGCCAAGCTT < 41bp 0.48685595877716 0.708890426037555 NA NA prediction 0.417780852075109 Functional Gain - SRRM3 ENSG00000177679 CDS Human protein_coding chr7:75912375 chr7:75912374 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_29802 0 0 0 0 2 SRRM3 chr7:75912419 5'GT 75912419 Upstream 46bp 27247 chr11 62550241 62550241 1 + C T UCEC 62550242 + 62550222 62550262 41 GATCCTGGCAGATCCTGTGCGGCCGCTCTGCTGCCACTATG GATCCTGGCAGATCCTGTGTGGCCGCTCTGCTGCCACTATG < 41bp 0.526317167835597 0.735207482140255 NA NA prediction 0.417780628609314 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550242 chr11:62550241 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29803 0 0 1 0 2 TAF6L chr11:62550165 3'AG 62550165 Downstream 77bp 27248 chr11 62550241 62550241 1 + C T UCEC 62550242 + 62550222 62550262 41 GATCCTGGCAGATCCTGTGCGGCCGCTCTGCTGCCACTATG GATCCTGGCAGATCCTGTGTGGCCGCTCTGCTGCCACTATG < 41bp 0.526317167835597 0.735207482140255 NA NA prediction 0.417780628609314 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62550242 chr11:62550241 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29803 0 0 1 0 2 TAF6L chr11:62550297 5'GT 62550297 Upstream 57bp 27249 chr1 111781429 111781429 1 + G T UCEC 111781430 + 111781410 111781450 41 ATCAGAGAAGGTGGTCATGGGCATCCCCACATATGGGCACT ATCAGAGAAGGTGGTCATGTGCATCCCCACATATGGGCACT < 41bp 0.698591069196696 0.907477662471759 NA NA prediction 0.417773186550125 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111781430 chr1:111781429 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29805 0 0 0 0 1 CHI3L2 chr1:111781372 3'AG 111781372 Downstream 58bp 27250 chr10 50824587 50824587 1 + C T UCEC 50824588 + 50824568 50824608 41 GCACCAGGACTCACCAAGACGCCCATCCTGGAAAAGGTCCC GCACCAGGACTCACCAAGATGCCCATCCTGGAAAAGGTCCC < 41bp 0.519366265983766 0.728251905442982 NA NA prediction 0.417771278918432 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50824588 chr10:50824587 nonsynonymous SNV 0.530 1 20 hm7G_associated_SNPs_29806 0 0 0 0 2 CHAT chr10:50824548 3'AG 50824548 Downstream 40bp 27251 chr10 50824587 50824587 1 + C T UCEC 50824588 + 50824568 50824608 41 GCACCAGGACTCACCAAGACGCCCATCCTGGAAAAGGTCCC GCACCAGGACTCACCAAGATGCCCATCCTGGAAAAGGTCCC < 41bp 0.519366265983766 0.728251905442982 NA NA prediction 0.417771278918432 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50824588 chr10:50824587 nonsynonymous SNV 0.530 1 20 hm7G_associated_SNPs_29806 0 0 0 0 2 CHAT chr10:50824648 5'GT 50824648 Upstream 62bp 27252 chr2 69304553 69304553 1 + C T GBM 69304554 + 69304534 69304574 41 TCTCAGCTGGCCCGGATTGCGGACAGTAAGGATCATGTGTT TCTCAGCTGGCCCGGATTGTGGACAGTAAGGATCATGTGTT < 41bp 0.524213292352853 0.73309661739671 NA NA prediction 0.417766650087715 Functional Gain - ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69304554 chr2:69304553 nonsynonymous SNV 0.976 5 20 hm7G_associated_SNPs_29809 0 0 1 0 2 ANTXR1 chr2:69304540 3'AG 69304540 Downstream 14bp 27253 chr2 69304553 69304553 1 + C T GBM 69304554 + 69304534 69304574 41 TCTCAGCTGGCCCGGATTGCGGACAGTAAGGATCATGTGTT TCTCAGCTGGCCCGGATTGTGGACAGTAAGGATCATGTGTT < 41bp 0.524213292352853 0.73309661739671 NA NA prediction 0.417766650087715 Functional Gain - ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69304554 chr2:69304553 nonsynonymous SNV 0.976 5 20 hm7G_associated_SNPs_29809 0 0 1 0 2 ANTXR1 chr2:69304620 5'GT 69304620 Upstream 68bp 27254 chr19 6919615 6919615 1 + C T LUAD 6919616 + 6919596 6919636 41 GGAATCGGTTTTAAATGAGCGCTTCTTCAAAGACCACCAGG GGAATCGGTTTTAAATGAGTGCTTCTTCAAAGACCACCAGG < 41bp 0.506956210526744 0.715839401948156 NA NA prediction 0.417766382842824 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6919616 chr19:6919615 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_29810 0 0 0 0 1 ADGRE1 chr19:6919559 3'AG 6919559 Downstream 57bp 27255 chr10 75673062 75673062 1 + G A ESCA 75673063 + 75673043 75673083 41 GCCAGGAACCCAGACAACCGGAGGCGACCCTGGTGCTATGT GCCAGGAACCCAGACAACCAGAGGCGACCCTGGTGCTATGT < 41bp 0.500614455953796 0.709495634206839 NA NA prediction 0.417762356506087 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673063 chr10:75673062 nonsynonymous SNV 0.111 0 20 hm7G_associated_SNPs_29811 0 0 0 0 2 PLAU chr10:75673048 3'AG 75673048 Downstream 15bp 27256 chr10 75673062 75673062 1 + G A ESCA 75673063 + 75673043 75673083 41 GCCAGGAACCCAGACAACCGGAGGCGACCCTGGTGCTATGT GCCAGGAACCCAGACAACCAGAGGCGACCCTGGTGCTATGT < 41bp 0.500614455953796 0.709495634206839 NA NA prediction 0.417762356506087 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673063 chr10:75673062 nonsynonymous SNV 0.111 0 20 hm7G_associated_SNPs_29811 0 0 0 0 2 PLAU chr10:75673139 5'GT 75673139 Upstream 78bp 27257 chr5 79351648 79351648 1 + G T GBM 79351649 + 79351629 79351669 41 ACGATGGGAAGGTGCATTTGGTGGTTTTCAACAACCTGCAG ACGATGGGAAGGTGCATTTTGTGGTTTTCAACAACCTGCAG < 41bp 0.35980156638673 0.708878978852093 NA NA prediction 0.417757957704186 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79351649 chr5:79351648 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_29812 0 0 0 0 1 THBS4 chr5:79351608 3'AG 79351608 Downstream 41bp 27258 chr3 124449388 124449388 1 + G T LUAD 124449389 + 124449369 124449409 41 CGTGCAGGCTTTCAAGTTTGGGGACTTCGTGCTGAAGAGCG CGTGCAGGCTTTCAAGTTTTGGGACTTCGTGCTGAAGAGCG < 41bp 0.377253454017681 0.708860341261125 NA NA prediction 0.41772068252225 Functional Gain - UMPS ENSG00000114491 CDS Human protein_coding chr3:124449389 chr3:124449388 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29814 0 0 1 0 1 UMPS chr3:124449474 5'GT 124449474 Upstream 87bp 27259 chr9 37737217 37737217 1 + C T rs571037699 37737218 + 37737198 37737238 41 CCTGGAAACAAACAACAAGCGCACCGGGTATCTGCAGAAGA CCTGGAAACAAACAACAAGTGCACCGGGTATCTGCAGAAGA < 41bp 0.501076590008735 0.70993683917526 NA NA prediction 0.417720498333051 Functional Gain - FRMPD1 ENSG00000070601 CDS Human protein_coding chr9:37737218 chr9:37737217 nonsynonymous SNV 0.572 0 20 hm7G_associated_SNPs_29815 0 0 0 0 1 FRMPD1 chr9:37737240 5'GT 37737240 Upstream 24bp 27260 chr1 203681264 203681264 1 + C T UCEC 203681265 + 203681245 203681285 41 TCATCCGCAACGAGAAAGGCGAGGTGGGTCCTGGCTAGGGG TCATCCGCAACGAGAAAGGTGAGGTGGGTCCTGGCTAGGGG < 41bp 0.511665272246964 0.720525088337457 NA NA prediction 0.417719632180985 Functional Gain - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203681265 chr1:203681264 synonymous SNV . 0 20 hm7G_associated_SNPs_29816 0 0 1 0 1 ATP2B4 chr1:203681267 5'GT 203681267 Upstream 4bp 27261 chr11 65732852 65732852 1 + C T rs188245267 65732853 + 65732833 65732873 41 AGGATGACCCCTGGCTGGACGACACTGCAGCCTGGATCGAG AGGATGACCCCTGGCTGGATGACACTGCAGCCTGGATCGAG < 41bp 0.5128336903703 0.721693007793329 NA NA prediction 0.417718634846057 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65732853 chr11:65732852 synonymous SNV . 0 20 hm7G_associated_SNPs_29817 0 0 1 0 1 SART1 chr11:65732813 3'AG 65732813 Downstream 40bp 27262 chr2 74719478 74719478 1 + C T UCEC 74719479 + 74719459 74719499 41 GAGCGGTTGGGTCAGCCAGCGTGGGCCCTGGCTGATGCCCA GAGCGGTTGGGTCAGCCAGTGTGGGCCCTGGCTGATGCCCA < 41bp 0.502699961098161 0.711558713516777 NA NA prediction 0.417717504837231 Functional Gain - TTC31 ENSG00000115282 CDS Human protein_coding chr2:74719479 chr2:74719478 nonsynonymous SNV 0.073 0 20 hm7G_associated_SNPs_29818 0 0 1 0 1 TTC31 chr2:74719431 3'AG 74719431 Downstream 48bp 27263 chr2 182344981 182344981 1 + G T COAD 182344982 + 182344962 182345002 41 ACAAAATCAAGTAAAATTTGGAAGTTATTTAGGTACTATAA ACAAAATCAAGTAAAATTTTGAAGTTATTTAGGTACTATAA < 41bp 0.395806657963917 0.708851884457096 NA NA prediction 0.417703768914192 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182344982 chr2:182344981 stopgain 1.000 1 20 hm7G_associated_SNPs_29822 0 0 0 0 1 ITGA4 chr2:182344993 5'GT 182344993 Upstream 13bp 27264 chrX 70618501 70618501 1 + C T UCEC 70618502 + 70618482 70618522 41 GATTCAAGAGCAACTGAGGCGGCTTAAGAGGAACCAGGAAA GATTCAAGAGCAACTGAGGTGGCTTAAGAGGAACCAGGAAA < 41bp 0.520512167239351 0.7293582532143 NA NA prediction 0.4176921719499 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70618502 chrX:70618501 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_29823 0 0 1 0 2 TAF1 chrX:70618422 3'AG 70618422 Downstream 80bp 27265 chrX 70618501 70618501 1 + C T UCEC 70618502 + 70618482 70618522 41 GATTCAAGAGCAACTGAGGCGGCTTAAGAGGAACCAGGAAA GATTCAAGAGCAACTGAGGTGGCTTAAGAGGAACCAGGAAA < 41bp 0.520512167239351 0.7293582532143 NA NA prediction 0.4176921719499 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70618502 chrX:70618501 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_29823 0 0 1 0 2 TAF1 chrX:70618587 5'GT 70618587 Upstream 87bp 27266 chr6 108492739 108492739 1 + G A PRAD 108492740 + 108492720 108492760 41 CGGGGTCTACGCCTGCGACGGCTGCTCAGGTTTTTTCAAAC CGGGGTCTACGCCTGCGACAGCTGCTCAGGTTTTTTCAAAC < 41bp 0.527446043116359 0.736286013946373 NA NA prediction 0.417679941660029 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108492740 chr6:108492739 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_29825 0 0 0 0 2 NR2E1 chr6:108492662 3'AG 108492662 Downstream 78bp 27267 chr6 108492739 108492739 1 + G A PRAD 108492740 + 108492720 108492760 41 CGGGGTCTACGCCTGCGACGGCTGCTCAGGTTTTTTCAAAC CGGGGTCTACGCCTGCGACAGCTGCTCAGGTTTTTTCAAAC < 41bp 0.527446043116359 0.736286013946373 NA NA prediction 0.417679941660029 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108492740 chr6:108492739 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_29825 0 0 0 0 2 NR2E1 chr6:108492807 5'GT 108492807 Upstream 69bp 27268 chr22 18064158 18064158 1 + G A SKCM 18064159 + 18064139 18064179 41 GAAGACGGCTCGGGCGGAGGGCTTCTTCGGCATGTACCGAG GAAGACGGCTCGGGCGGAGAGCTTCTTCGGCATGTACCGAG < 41bp 0.565634176582505 0.774469618742517 NA NA prediction 0.417670884320024 Functional Gain - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064159 chr22:18064158 nonsynonymous SNV 0.789 5 20 hm7G_associated_SNPs_29827 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064124 3'AG 18064124 Downstream 35bp 27269 chr22 18064158 18064158 1 + G A SKCM 18064159 + 18064139 18064179 41 GAAGACGGCTCGGGCGGAGGGCTTCTTCGGCATGTACCGAG GAAGACGGCTCGGGCGGAGAGCTTCTTCGGCATGTACCGAG < 41bp 0.565634176582505 0.774469618742517 NA NA prediction 0.417670884320024 Functional Gain - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18064159 chr22:18064158 nonsynonymous SNV 0.789 5 20 hm7G_associated_SNPs_29827 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18064179 5'GT 18064179 Upstream 22bp 27270 chr12 106890577 106890577 1 + C T GBM 106890578 + 106890558 106890598 41 GCAAGGCCGGTGTGCTGGACGGCAGATTCCACTACGGCACT GCAAGGCCGGTGTGCTGGATGGCAGATTCCACTACGGCACT < 41bp 0.52112626676691 0.729959499800407 NA NA prediction 0.417666466066993 Functional Gain - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106890578 chr12:106890577 synonymous SNV . 0 20 hm7G_associated_SNPs_29829 0 0 0 0 1 POLR3B chr12:106890530 3'AG 106890530 Downstream 48bp 27271 chr15 22933848 22933848 1 + C T COAD 22933849 + 22933829 22933869 41 GAGAACAGGATGTATTTGACGCCCAGTGAGAAACACATGCT GAGAACAGGATGTATTTGATGCCCAGTGAGAAACACATGCT < 41bp 0.517712885372403 0.726544306182713 NA NA prediction 0.41766284162062 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22933849 chr15:22933848 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29830 0 0 1 0 1 CYFIP1 chr15:22933876 5'GT 22933876 Upstream 29bp 27272 chr2 219614016 219614016 1 + C T STAD 219614017 + 219613997 219614037 41 CCTGCTCAAGATGTATGTGCGACGGCCCTATAGCTGCCATG CCTGCTCAAGATGTATGTGTGACGGCCCTATAGCTGCCATG < 41bp 0.537340565641459 0.74616367025495 NA NA prediction 0.417646209226981 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219614017 chr2:219614016 stopgain 1.000 0 20 hm7G_associated_SNPs_29834 0 0 1 0 2 TTLL4 chr2:219613976 3'AG 219613976 Downstream 41bp 27273 chr2 219614016 219614016 1 + C T STAD 219614017 + 219613997 219614037 41 CCTGCTCAAGATGTATGTGCGACGGCCCTATAGCTGCCATG CCTGCTCAAGATGTATGTGTGACGGCCCTATAGCTGCCATG < 41bp 0.537340565641459 0.74616367025495 NA NA prediction 0.417646209226981 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219614017 chr2:219614016 stopgain 1.000 0 20 hm7G_associated_SNPs_29834 0 0 1 0 2 TTLL4 chr2:219614110 5'GT 219614110 Upstream 95bp 27274 chr5 176016608 176016608 1 + C T UCEC 176016609 + 176016589 176016629 41 GTGGGCGCCAACAGACAGGCGATTAATGCGTAGGTCTGGGG GTGGGCGCCAACAGACAGGTGATTAATGCGTAGGTCTGGGG < 41bp 0.502444584638729 0.711267191422332 NA NA prediction 0.417645213567206 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016609 chr5:176016608 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_29835 0 0 0 0 2 CDHR2 chr5:176016529 3'AG 176016529 Downstream 80bp 27275 chr5 176016608 176016608 1 + C T UCEC 176016609 + 176016589 176016629 41 GTGGGCGCCAACAGACAGGCGATTAATGCGTAGGTCTGGGG GTGGGCGCCAACAGACAGGTGATTAATGCGTAGGTCTGGGG < 41bp 0.502444584638729 0.711267191422332 NA NA prediction 0.417645213567206 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176016609 chr5:176016608 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_29835 0 0 0 0 2 CDHR2 chr5:176016617 5'GT 176016617 Upstream 10bp 27276 chr22 49103590 49103590 1 + C T rs372988376 49103591 + 49103571 49103611 41 GTCTGGAGGGGGAAGGCTGCGACTTGTTAATCAACCGGTCA GTCTGGAGGGGGAAGGCTGTGACTTGTTAATCAACCGGTCA < 41bp 0.499799074407182 0.70882195810507 NA NA prediction 0.41764391621014 Functional Gain - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49103591 chr22:49103590 synonymous SNV . 0 20 hm7G_associated_SNPs_29836 0 0 1 0 2 FAM19A5 chr22:49103529 3'AG 49103529 Downstream 62bp 27277 chr22 49103590 49103590 1 + C T rs372988376 49103591 + 49103571 49103611 41 GTCTGGAGGGGGAAGGCTGCGACTTGTTAATCAACCGGTCA GTCTGGAGGGGGAAGGCTGTGACTTGTTAATCAACCGGTCA < 41bp 0.499799074407182 0.70882195810507 NA NA prediction 0.41764391621014 Functional Gain - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49103591 chr22:49103590 synonymous SNV . 0 20 hm7G_associated_SNPs_29836 0 0 1 0 2 FAM19A5 chr22:49103656 5'GT 49103656 Upstream 67bp 27278 chr1 12164454 12164454 1 + C T COAD 12164455 + 12164435 12164475 41 GACGACCTCGTGGAGAAGACGCCGTGTGCATGGAACTCCTC GACGACCTCGTGGAGAAGATGCCGTGTGCATGGAACTCCTC < 41bp 0.507226228567026 0.716046793660051 NA NA prediction 0.417641130186051 Functional Gain - TNFRSF8 ENSG00000120949 CDS Human protein_coding chr1:12164455 chr1:12164454 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_29837 0 0 1 0 1 TNFRSF8 chr1:12164436 3'AG 12164436 Downstream 19bp 27279 chr17 48185988 48185988 1 + G T UCEC 48185989 + 48185969 48186009 41 CTCCCAGATGAGTGACCGAGGTGGGGGTGTTCCCTTGAGGA CTCCCAGATGAGTGACCGATGTGGGGGTGTTCCCTTGAGGA < 41bp 0.367819048280016 0.708815690646085 NA NA prediction 0.41763138129217 Functional Gain - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185989 chr17:48185988 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29839 0 0 1 0 2 PDK2 chr17:48185976 3'AG 48185976 Downstream 13bp 27280 chr17 48185988 48185988 1 + G T UCEC 48185989 + 48185969 48186009 41 CTCCCAGATGAGTGACCGAGGTGGGGGTGTTCCCTTGAGGA CTCCCAGATGAGTGACCGATGTGGGGGTGTTCCCTTGAGGA < 41bp 0.367819048280016 0.708815690646085 NA NA prediction 0.41763138129217 Functional Gain - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48185989 chr17:48185988 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29839 0 0 1 0 2 PDK2 chr17:48186083 5'GT 48186083 Upstream 96bp 27281 chr16 22268146 22268146 1 + C T BRCA 22268147 + 22268127 22268167 41 TCCACCTGGAGCACTACATCGAGGGCAAGTACATCAAGTAC TCCACCTGGAGCACTACATTGAGGGCAAGTACATCAAGTAC < 41bp 0.5100352005371 0.718847952202964 NA NA prediction 0.417625503331728 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22268147 chr16:22268146 synonymous SNV . 0 20 hm7G_associated_SNPs_29840 0 0 1 0 2 EEF2K chr16:22268069 3'AG 22268069 Downstream 78bp 27282 chr16 22268146 22268146 1 + C T BRCA 22268147 + 22268127 22268167 41 TCCACCTGGAGCACTACATCGAGGGCAAGTACATCAAGTAC TCCACCTGGAGCACTACATTGAGGGCAAGTACATCAAGTAC < 41bp 0.5100352005371 0.718847952202964 NA NA prediction 0.417625503331728 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22268147 chr16:22268146 synonymous SNV . 0 20 hm7G_associated_SNPs_29840 0 0 1 0 2 EEF2K chr16:22268218 5'GT 22268218 Upstream 73bp 27283 chr5 133450787 133450787 1 + G A rs536597086 133450788 + 133450768 133450808 41 CGAGTCCGAGGGCGCGGCCGGCGGCGCAGGGATCCCGGGGG CGAGTCCGAGGGCGCGGCCAGCGGCGCAGGGATCCCGGGGG < 41bp 0.491446438601989 0.708809314050125 NA NA prediction 0.41761862810025 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133450788 chr5:133450787 nonsynonymous SNV 0.942 1 20 hm7G_associated_SNPs_29841 0 0 0 0 1 TCF7 chr5:133450846 5'GT 133450846 Upstream 60bp 27284 chr1 3395039 3395039 1 + G A rs10797395 3395040 + 3395020 3395060 41 AGATGAACCACATCCAGGTGGAGAAGATAGAGCCGTCTGAG AGATGAACCACATCCAGGTAGAGAAGATAGAGCCGTCTGAG < 41bp 0.519791732622225 0.72860043502366 NA NA prediction 0.417617404802871 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3395040 chr1:3395039 synonymous SNV . 0 20 hm7G_associated_SNPs_29842 0 0 0 0 1 ARHGEF16 chr1:3394988 3'AG 3394988 Downstream 52bp 27285 chr17 40936150 40936150 1 + C T LUSC 40936151 + 40936131 40936171 41 GCCTGGCCACGCTCAAGCGCGCCTCCTTTGCCAAGAGTGTC GCCTGGCCACGCTCAAGCGTGCCTCCTTTGCCAAGAGTGTC < 41bp 0.51109157539609 0.719895958400473 NA NA prediction 0.417608766008766 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936151 chr17:40936150 synonymous SNV . 0 20 hm7G_associated_SNPs_29845 0 0 1 0 1 WNK4 chr17:40936175 5'GT 40936175 Upstream 26bp 27286 chr3 184298288 184298288 1 + C T STAD 184298289 + 184298269 184298309 41 AGATGAACTATGTGCACCGCGACCTGGCTGCTCGCAACATC AGATGAACTATGTGCACCGTGACCTGGCTGCTCGCAACATC < 41bp 0.508384609484372 0.717187743907738 NA NA prediction 0.417606268846731 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184298289 chr3:184298288 synonymous SNV . 0 20 hm7G_associated_SNPs_29846 0 0 0 0 1 EPHB3 chr3:184298190 3'AG 184298190 Downstream 99bp 27287 chr19 19330057 19330057 1 + G T LUAD 19330058 + 19330038 19330078 41 CTGAGGGCCAGTGACTCTGGGCTGTACCGCTGCCAGGTGGT CTGAGGGCCAGTGACTCTGTGCTGTACCGCTGCCAGGTGGT < 41bp 0.349518620377073 0.708802197806354 NA NA prediction 0.417604395612708 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19330058 chr19:19330057 nonsynonymous SNV 0.461 3 20 hm7G_associated_SNPs_29847 0 0 0 0 1 NCAN chr19:19330125 5'GT 19330125 Upstream 69bp 27288 chr2 113950878 113950878 1 + C T COAD 113950879 + 113950859 113950899 41 CAGTGGGGAGACTCAGGAACGGGAGCGAATCCTCTACCAGT CAGTGGGGAGACTCAGGAATGGGAGCGAATCCTCTACCAGT < 41bp 0.518101395265068 0.726899196013004 NA NA prediction 0.417595601495872 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950879 chr2:113950878 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29850 0 0 0 0 2 PSD4 chr2:113950835 3'AG 113950835 Downstream 44bp 27289 chr2 113950878 113950878 1 + C T COAD 113950879 + 113950859 113950899 41 CAGTGGGGAGACTCAGGAACGGGAGCGAATCCTCTACCAGT CAGTGGGGAGACTCAGGAATGGGAGCGAATCCTCTACCAGT < 41bp 0.518101395265068 0.726899196013004 NA NA prediction 0.417595601495872 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950879 chr2:113950878 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29850 0 0 0 0 2 PSD4 chr2:113950947 5'GT 113950947 Upstream 70bp 27290 chr3 13667988 13667988 1 + C T UCEC 13667989 + 13667969 13668009 41 TGCACACGTGCAGCCGGGGCGAGCACTGTGTGAACACACTG TGCACACGTGCAGCCGGGGTGAGCACTGTGTGAACACACTG < 41bp 0.51609123202608 0.724888838139481 NA NA prediction 0.417595212226802 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13667989 chr3:13667988 synonymous SNV . 0 20 hm7G_associated_SNPs_29851 0 0 0 0 2 FBLN2 chr3:13667945 3'AG 13667945 Downstream 44bp 27291 chr3 13667988 13667988 1 + C T UCEC 13667989 + 13667969 13668009 41 TGCACACGTGCAGCCGGGGCGAGCACTGTGTGAACACACTG TGCACACGTGCAGCCGGGGTGAGCACTGTGTGAACACACTG < 41bp 0.51609123202608 0.724888838139481 NA NA prediction 0.417595212226802 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13667989 chr3:13667988 synonymous SNV . 0 20 hm7G_associated_SNPs_29851 0 0 0 0 2 FBLN2 chr3:13668079 5'GT 13668079 Upstream 92bp 27292 chr1 175086149 175086149 1 + C T CESC 175086150 + 175086130 175086170 41 TGTCTCCTGGGACCCGGTGCGGGCCACCATTGACAGGTATG TGTCTCCTGGGACCCGGTGTGGGCCACCATTGACAGGTATG < 41bp 0.506372572302574 0.715170015205341 NA NA prediction 0.417594885805534 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175086150 chr1:175086149 nonsynonymous SNV 0.008 2 20 hm7G_associated_SNPs_29852 0 0 0 0 1 TNN chr1:175086075 3'AG 175086075 Downstream 75bp 27293 chr2 113950879 113950879 1 + G A COAD 113950880 + 113950860 113950900 41 AGTGGGGAGACTCAGGAACGGGAGCGAATCCTCTACCAGTT AGTGGGGAGACTCAGGAACAGGAGCGAATCCTCTACCAGTT < 41bp 0.517982387481567 0.726776427099531 NA NA prediction 0.417588079235928 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950880 chr2:113950879 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29854 0 0 0 0 2 PSD4 chr2:113950835 3'AG 113950835 Downstream 45bp 27294 chr2 113950879 113950879 1 + G A COAD 113950880 + 113950860 113950900 41 AGTGGGGAGACTCAGGAACGGGAGCGAATCCTCTACCAGTT AGTGGGGAGACTCAGGAACAGGAGCGAATCCTCTACCAGTT < 41bp 0.517982387481567 0.726776427099531 NA NA prediction 0.417588079235928 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113950880 chr2:113950879 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29854 0 0 0 0 2 PSD4 chr2:113950947 5'GT 113950947 Upstream 69bp 27295 chr6 155129838 155129838 1 + G T LUAD 155129839 + 155129819 155129859 41 GGATATGGATATAGATGAAGGGCAAGATGGAGTGGAAGAGG GGATATGGATATAGATGAATGGCAAGATGGAGTGGAAGAGG < 41bp 0.698418724908807 0.907206021542756 NA NA prediction 0.417574593267899 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155129839 chr6:155129838 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_29855 0 0 1 0 2 SCAF8 chr6:155129820 3'AG 155129820 Downstream 19bp 27296 chr6 155129838 155129838 1 + G T LUAD 155129839 + 155129819 155129859 41 GGATATGGATATAGATGAAGGGCAAGATGGAGTGGAAGAGG GGATATGGATATAGATGAATGGCAAGATGGAGTGGAAGAGG < 41bp 0.698418724908807 0.907206021542756 NA NA prediction 0.417574593267899 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155129839 chr6:155129838 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_29855 0 0 1 0 2 SCAF8 chr6:155129932 5'GT 155129932 Upstream 95bp 27297 chr17 73725487 73725487 1 + C T UCEC 73725488 + 73725468 73725508 41 ATGCTCCTGAGGGCGGCTTCGATGCCATCCTGCAGACAGCT ATGCTCCTGAGGGCGGCTTTGATGCCATCCTGCAGACAGCT < 41bp 0.524489207545237 0.733276310449407 NA NA prediction 0.417574205808341 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73725488 chr17:73725487 synonymous SNV . 0 20 hm7G_associated_SNPs_29856 1 0 0 0 1 ITGB4 chr17:73725517 5'GT 73725517 Upstream 31bp 27298 chr6 3127585 3127585 1 + C T STAD 3127586 + 3127566 3127606 41 ATTCCAGGCCCCCAGATCGCGATTTCCCAGCAGACTTTTTT ATTCCAGGCCCCCAGATCGTGATTTCCCAGCAGACTTTTTT < 41bp 0.497258100360649 0.708785356039979 NA NA prediction 0.417570712079959 Functional Gain - BPHL ENSG00000137274 CDS Human protein_coding chr6:3127586 chr6:3127585 synonymous SNV . 0 20 hm7G_associated_SNPs_29859 0 0 1 0 1 BPHL chr6:3127642 5'GT 3127642 Upstream 58bp 27299 chr2 220472828 220472828 1 + G A UCEC 220472829 + 220472809 220472849 41 CAGCTTCCGGGAACGGTTCGGCCGCAACTGGCTGCAGTACA CAGCTTCCGGGAACGGTTCAGCCGCAACTGGCTGCAGTACA < 41bp 0.513259181013455 0.722044100891464 NA NA prediction 0.417569839756018 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220472829 chr2:220472828 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_29860 0 0 0 0 1 STK11IP chr2:220472769 3'AG 220472769 Downstream 60bp 27300 chr22 37319400 37319400 1 + G A SKCM 37319401 + 37319381 37319421 41 AACGTGACCCTCATTCGCCGGGTGAATGAGTGAGTGATGCT AACGTGACCCTCATTCGCCAGGTGAATGAGTGAGTGATGCT < 41bp 0.51859596371358 0.727377206982917 NA NA prediction 0.417562486538675 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37319401 chr22:37319400 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_29862 0 0 0 0 1 CSF2RB chr22:37319409 5'GT 37319409 Upstream 10bp 27301 chr6 160858188 160858188 1 + G A rs2292334 160858189 + 160858169 160858209 41 GACGACGCCTCCCCTTTGCGGCAAGCAATATAGTGGCAGGG GACGACGCCTCCCCTTTGCAGCAAGCAATATAGTGGCAGGG < 41bp 0.504627878685305 0.713405970499936 NA NA prediction 0.417556183629261 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160858189 chr6:160858188 synonymous SNV . 0 20 hm7G_associated_SNPs_29866 0 0 0 0 1 SLC22A3 chr6:160858243 5'GT 160858243 Upstream 56bp 27302 chr9 72833324 72833324 1 + C T BLCA 72833325 + 72833305 72833345 41 CCTCTTGTCCAGGCCTCTGCGAGGAGTCTCTGGAAAACACT CCTCTTGTCCAGGCCTCTGTGAGGAGTCTCTGGAAAACACT < 41bp 0.529921275522276 0.738698487207774 NA NA prediction 0.417554423370995 Functional Gain - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72833325 chr9:72833324 stopgain 0.058 1 20 hm7G_associated_SNPs_29867 0 0 0 0 1 MAMDC2 chr9:72833253 3'AG 72833253 Downstream 72bp 27303 chr10 99215452 99215452 1 + G T UCEC 99215453 + 99215433 99215473 41 CTGGGTGCCCTAACTGTATGGCATGCTGTTCTCATCAGTCG CTGGGTGCCCTAACTGTATTGCATGCTGTTCTCATCAGTCG < 41bp 0.355643008512685 0.70877601780613 NA NA prediction 0.41755203561226 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99215453 chr10:99215452 nonsynonymous SNV 0.935 4 20 hm7G_associated_SNPs_29868 0 0 1 0 1 ZDHHC16 chr10:99215417 3'AG 99215417 Downstream 36bp 27304 chr7 117180323 117180323 1 + C T UCEC 117180324 + 117180304 117180344 41 CTCATTCTGCATTGTTCTGCGCATGGCGGTCACTCGGCAAT CTCATTCTGCATTGTTCTGTGCATGGCGGTCACTCGGCAAT < 41bp 0.522276964652522 0.73105126673435 NA NA prediction 0.417548604163657 Functional Gain - CFTR ENSG00000001626 CDS Human protein_coding chr7:117180324 chr7:117180323 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_29869 1 0 0 0 1 CFTR chr7:117180400 5'GT 117180400 Upstream 78bp 27305 chr7 150932643 150932643 1 + G A SKCM 150932644 + 150932624 150932664 41 AGTGCCCGTCCTGACGAGTGGCTTGGACGCTGCCTCATTGA AGTGCCCGTCCTGACGAGTAGCTTGGACGCTGCCTCATTGA < 41bp 0.556665344163211 0.76543814260427 NA NA prediction 0.417545596882119 Functional Gain - CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150932644 chr7:150932643 stopgain 1.000 1 20 hm7G_associated_SNPs_29871 0 0 1 0 1 CHPF2 chr7:150932698 5'GT 150932698 Upstream 56bp 27306 chr19 12958187 12958187 1 + C T UCEC 12958188 + 12958168 12958208 41 ACTTCCTCTCCAAACACTTCGGGAGCACCGAGAGCATCACA ACTTCCTCTCCAAACACTTTGGGAGCACCGAGAGCATCACA < 41bp 0.514999349959588 0.723772030055072 NA NA prediction 0.417545360190968 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12958188 chr19:12958187 synonymous SNV . 0 20 hm7G_associated_SNPs_29872 0 0 1 0 2 MAST1 chr19:12958104 3'AG 12958104 Downstream 84bp 27307 chr19 12958187 12958187 1 + C T UCEC 12958188 + 12958168 12958208 41 ACTTCCTCTCCAAACACTTCGGGAGCACCGAGAGCATCACA ACTTCCTCTCCAAACACTTTGGGAGCACCGAGAGCATCACA < 41bp 0.514999349959588 0.723772030055072 NA NA prediction 0.417545360190968 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12958188 chr19:12958187 synonymous SNV . 0 20 hm7G_associated_SNPs_29872 0 0 1 0 2 MAST1 chr19:12958264 5'GT 12958264 Upstream 78bp 27308 chr2 231134613 231134613 1 + G T LUAD 231134614 + 231134594 231134634 41 TCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCCCAGAAGCA TCATGTGTTTCTCAGAAGATGTGCCAGGAAGCCCAGAAGCA < 41bp 0.380161463804808 0.708772440891782 NA NA prediction 0.417544881783564 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231134614 chr2:231134613 nonsynonymous SNV 0.329 0 20 hm7G_associated_SNPs_29873 0 0 0 1 2 SP140 chr2:231134552 3'AG 231134552 Downstream 62bp 27309 chr2 231134613 231134613 1 + G T LUAD 231134614 + 231134594 231134634 41 TCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCCCAGAAGCA TCATGTGTTTCTCAGAAGATGTGCCAGGAAGCCCAGAAGCA < 41bp 0.380161463804808 0.708772440891782 NA NA prediction 0.417544881783564 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231134614 chr2:231134613 nonsynonymous SNV 0.329 0 20 hm7G_associated_SNPs_29873 0 0 0 1 2 SP140 chr2:231134668 5'GT 231134668 Upstream 56bp 27310 chr19 10556978 10556978 1 + C T COAD 10556979 + 10556959 10556999 41 CAGGACTCGTGCTGCACGCCGGGGCGGCCACCAGCCAGCGC CAGGACTCGTGCTGCACGCTGGGGCGGCCACCAGCCAGCGC < 41bp 0.501464197438565 0.710234812030336 NA NA prediction 0.417541229183542 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10556979 chr19:10556978 synonymous SNV . 0 20 hm7G_associated_SNPs_29874 0 0 0 0 1 PDE4A chr19:10556894 3'AG 10556894 Downstream 85bp 27311 chr11 45869177 45869177 1 + G A CESC 45869178 + 45869158 45869198 41 GTTGCTGGCGGCCGTGCGCGGGGCGCGCTGCGTGCGCTGCG GTTGCTGGCGGCCGTGCGCAGGGCGCGCTGCGTGCGCTGCG < 41bp 0.547984359429205 0.756754440226417 NA NA prediction 0.417540161594423 Functional Gain - CRY2 ENSG00000121671 CDS Human protein_coding chr11:45869178 chr11:45869177 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_29875 0 0 0 0 1 CRY2 chr11:45869256 5'GT 45869256 Upstream 80bp 27312 chr17 5039171 5039171 1 + C T LGG 5039172 + 5039152 5039192 41 TTTATCTGCCTGAGGAGGACGCATTCTGGGCACTGGTGCAG TTTATCTGCCTGAGGAGGATGCATTCTGGGCACTGGTGCAG < 41bp 0.528268595668004 0.737038259795496 NA NA prediction 0.417539328254985 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5039172 chr17:5039171 synonymous SNV . 0 20 hm7G_associated_SNPs_29876 0 0 0 0 2 USP6 chr17:5039103 3'AG 5039103 Downstream 69bp 27313 chr17 5039171 5039171 1 + C T LGG 5039172 + 5039152 5039192 41 TTTATCTGCCTGAGGAGGACGCATTCTGGGCACTGGTGCAG TTTATCTGCCTGAGGAGGATGCATTCTGGGCACTGGTGCAG < 41bp 0.528268595668004 0.737038259795496 NA NA prediction 0.417539328254985 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5039172 chr17:5039171 synonymous SNV . 0 20 hm7G_associated_SNPs_29876 0 0 0 0 2 USP6 chr17:5039223 5'GT 5039223 Upstream 53bp 27314 chr20 61451333 61451333 1 + G A rs142639450 61451334 + 61451314 61451354 41 AAGGGTGCCCCTGGGGAACGGGTAAGTGCCTGCGCCGAACC AAGGGTGCCCCTGGGGAACAGGTAAGTGCCTGCGCCGAACC < 41bp 0.566693568201464 0.775461768060053 NA NA prediction 0.417536399717177 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61451334 chr20:61451333 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_29878 2 0 1 0 1 COL9A3 chr20:61451334 5'GT 61451334 Upstream 2bp 27315 chr17 72741475 72741475 1 + G A rs36093386 72741476 + 72741456 72741496 41 ACCGGGCCGGGCATCAGGCGGATGAGCCCAGCTTCCAGATC ACCGGGCCGGGCATCAGGCAGATGAGCCCAGCTTCCAGATC < 41bp 0.520933419974999 0.729701074834498 NA NA prediction 0.417535309718998 Functional Gain - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72741476 chr17:72741475 synonymous SNV . 0 20 hm7G_associated_SNPs_29879 0 0 1 0 1 RAB37 chr17:72741445 3'AG 72741445 Downstream 31bp 27316 chr1 160098835 160098835 1 + C T COAD 160098836 + 160098816 160098856 41 AATTGCTGGTCTCTGCAACCGCGCCGTCTTCAAGGCAGGAC AATTGCTGGTCTCTGCAACTGCGCCGTCTTCAAGGCAGGAC < 41bp 0.545755279186283 0.754520956269617 NA NA prediction 0.417531354166668 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098836 chr1:160098835 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_29881 1 0 0 0 2 ATP1A2 chr1:160098770 3'AG 160098770 Downstream 66bp 27317 chr1 160098835 160098835 1 + C T COAD 160098836 + 160098816 160098856 41 AATTGCTGGTCTCTGCAACCGCGCCGTCTTCAAGGCAGGAC AATTGCTGGTCTCTGCAACTGCGCCGTCTTCAAGGCAGGAC < 41bp 0.545755279186283 0.754520956269617 NA NA prediction 0.417531354166668 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098836 chr1:160098835 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_29881 1 0 0 0 2 ATP1A2 chr1:160098879 5'GT 160098879 Upstream 45bp 27318 chr10 71008270 71008270 1 + G A SKCM 71008271 + 71008251 71008291 41 AGAGTGGCAGCACCAAGGGGGCCGCCATGGTGACCGCGGTG AGAGTGGCAGCACCAAGGGAGCCGCCATGGTGACCGCGGTG < 41bp 0.559915164625975 0.768679596619033 NA NA prediction 0.417528863986118 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71008271 chr10:71008270 synonymous SNV . 0 20 hm7G_associated_SNPs_29882 0 0 0 0 1 HKDC1 chr10:71008180 3'AG 71008180 Downstream 91bp 27319 chr11 58962834 58962834 1 + G A UCEC 58962835 + 58962815 58962855 41 CATCTACAGCATCCCCCCCGGCATTCAGGTGAGCCTTTCTC CATCTACAGCATCCCCCCCAGCATTCAGGTGAGCCTTTCTC < 41bp 0.519003321103652 0.727765058980366 NA NA prediction 0.41752347575343 Functional Gain - DTX4 ENSG00000110042 CDS Human protein_coding chr11:58962835 chr11:58962834 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_29883 0 0 0 0 1 DTX4 chr11:58962842 5'GT 58962842 Upstream 9bp 27320 chr7 73768325 73768325 1 + C T PAAD 73768326 + 73768306 73768346 41 AAGAATGATGGGGCGGTGGCGGGCACCAGGTATGGTGGGCT AAGAATGATGGGGCGGTGGTGGGCACCAGGTATGGTGGGCT < 41bp 0.513059692927145 0.721819683094856 NA NA prediction 0.417519980335422 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73768326 chr7:73768325 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_29884 0 0 1 0 1 CLIP2 chr7:73768334 5'GT 73768334 Upstream 10bp 27321 chr5 121726856 121726856 1 + G T THCA 121726857 + 121726837 121726877 41 CCCCTGAATACCTTGATTTGGATGAAATTGACTTTAGTGAT CCCCTGAATACCTTGATTTTGATGAAATTGACTTTAGTGAT < 41bp 0.395866266707269 0.708756588405062 NA NA prediction 0.417513176810123 Functional Gain - SNCAIP ENSG00000064692 CDS Human protein_coding chr5:121726857 chr5:121726856 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29885 0 0 1 0 1 SNCAIP chr5:121726886 5'GT 121726886 Upstream 31bp 27322 chr20 61593989 61593989 1 + G A COAD 61593990 + 61593970 61594010 41 TTGCAGGACGCTGCTGACCGGGGCGGTGGGCTCCCTGCTCC TTGCAGGACGCTGCTGACCAGGGCGGTGGGCTCCCTGCTCC < 41bp 0.56523771797242 0.773991173540142 NA NA prediction 0.417506911135444 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61593990 chr20:61593989 nonsynonymous SNV 0.008 4 20 hm7G_associated_SNPs_29886 0 0 1 0 1 SLC17A9 chr20:61593976 3'AG 61593976 Downstream 14bp 27323 chr20 5154223 5154223 1 + C T CESC 5154224 + 5154204 5154244 41 TGCATCGGACAGTGAGAGCCGGGCAGAATCCGCACCCCTGC TGCATCGGACAGTGAGAGCTGGGCAGAATCCGCACCCCTGC < 41bp 0.50125544726413 0.710008253703834 NA NA prediction 0.417505612879408 Functional Gain - CDS2 ENSG00000101290 CDS Human protein_coding chr20:5154224 chr20:5154223 nonsynonymous SNV 0.822 2 20 hm7G_associated_SNPs_29887 0 0 1 0 2 CDS2 chr20:5154169 3'AG 5154169 Downstream 55bp 27324 chr20 5154223 5154223 1 + C T CESC 5154224 + 5154204 5154244 41 TGCATCGGACAGTGAGAGCCGGGCAGAATCCGCACCCCTGC TGCATCGGACAGTGAGAGCTGGGCAGAATCCGCACCCCTGC < 41bp 0.50125544726413 0.710008253703834 NA NA prediction 0.417505612879408 Functional Gain - CDS2 ENSG00000101290 CDS Human protein_coding chr20:5154224 chr20:5154223 nonsynonymous SNV 0.822 2 20 hm7G_associated_SNPs_29887 0 0 1 0 2 CDS2 chr20:5154305 5'GT 5154305 Upstream 83bp 27325 chr6 46721604 46721604 1 + C T UCEC 46721605 + 46721585 46721625 41 ATGCATTGCACGCTGCCATCGACGCCCCTGACTTCTTTGGA ATGCATTGCACGCTGCCATTGACGCCCCTGACTTCTTTGGA < 41bp 0.527700597583764 0.736452990621916 NA NA prediction 0.417504786076304 Functional Gain - ANKRD66 ENSG00000230062 CDS Human protein_coding chr6:46721605 chr6:46721604 synonymous SNV . 0 20 hm7G_associated_SNPs_29888 0 0 0 0 1 ANKRD66 chr6:46721687 5'GT 46721687 Upstream 84bp 27326 chr15 73832844 73832844 1 + G T UCEC 73832845 + 73832825 73832865 41 GGAAGGGTTTTCACTCATTGGTAGCAAGGACTGGTTGAAGA GGAAGGGTTTTCACTCATTTGTAGCAAGGACTGGTTGAAGA < 41bp 0.381352788210861 0.708752361061139 NA NA prediction 0.417504722122277 Functional Gain - REC114 ENSG00000183324 CDS Human protein_coding chr15:73832845 chr15:73832844 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_29889 0 0 0 0 1 REC114 chr15:73832826 3'AG 73832826 Downstream 19bp 27327 chr11 117866399 117866399 1 + C T BLCA 117866400 + 117866380 117866420 41 CCTCCAGCTGTATGTGCGGCGCCGAAAGAAGCTACCCAGTG CCTCCAGCTGTATGTGCGGTGCCGAAAGAAGCTACCCAGTG < 41bp 0.510418435239299 0.719169782302785 NA NA prediction 0.417502694126972 Functional Gain - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117866400 chr11:117866399 nonsynonymous SNV 0.552 2 20 hm7G_associated_SNPs_29891 1 0 0 0 2 IL10RA chr11:117866304 3'AG 117866304 Downstream 96bp 27328 chr11 117866399 117866399 1 + C T BLCA 117866400 + 117866380 117866420 41 CCTCCAGCTGTATGTGCGGCGCCGAAAGAAGCTACCCAGTG CCTCCAGCTGTATGTGCGGTGCCGAAAGAAGCTACCCAGTG < 41bp 0.510418435239299 0.719169782302785 NA NA prediction 0.417502694126972 Functional Gain - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117866400 chr11:117866399 nonsynonymous SNV 0.552 2 20 hm7G_associated_SNPs_29891 1 0 0 0 2 IL10RA chr11:117866425 5'GT 117866425 Upstream 27bp 27329 chr22 19707146 19707146 1 + G T LUAD 19707147 + 19707127 19707167 41 CATTGACAAGCAGTACGTGGGCTTCGCCACACTGCCCAACC CATTGACAAGCAGTACGTGTGCTTCGCCACACTGCCCAACC < 41bp 0.35760434451353 0.708749330323349 NA NA prediction 0.417498660646698 Functional Gain - SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707147 chr22:19707146 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29894 0 0 1 4 2 SEPT5 chr22:19707125 3'AG 19707125 Downstream 22bp 27330 chr22 19707146 19707146 1 + G T LUAD 19707147 + 19707127 19707167 41 CATTGACAAGCAGTACGTGGGCTTCGCCACACTGCCCAACC CATTGACAAGCAGTACGTGTGCTTCGCCACACTGCCCAACC < 41bp 0.35760434451353 0.708749330323349 NA NA prediction 0.417498660646698 Functional Gain - SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707147 chr22:19707146 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29894 0 0 1 4 2 SEPT5 chr22:19707221 5'GT 19707221 Upstream 76bp 27331 chr20 24565548 24565548 1 + G A SKCM 24565549 + 24565529 24565569 41 TCCTCATGATGCCCCCGCGGGACCACCTGGGCCTCAGTGTC TCCTCATGATGCCCCCGCGAGACCACCTGGGCCTCAGTGTC < 41bp 0.506082157531985 0.714829021145785 NA NA prediction 0.4174937272276 Functional Gain - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24565549 chr20:24565548 synonymous SNV . 0 20 hm7G_associated_SNPs_29895 0 0 0 0 2 SYNDIG1 chr20:24565492 3'AG 24565492 Downstream 57bp 27332 chr20 24565548 24565548 1 + G A SKCM 24565549 + 24565529 24565569 41 TCCTCATGATGCCCCCGCGGGACCACCTGGGCCTCAGTGTC TCCTCATGATGCCCCCGCGAGACCACCTGGGCCTCAGTGTC < 41bp 0.506082157531985 0.714829021145785 NA NA prediction 0.4174937272276 Functional Gain - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24565549 chr20:24565548 synonymous SNV . 0 20 hm7G_associated_SNPs_29895 0 0 0 0 2 SYNDIG1 chr20:24565629 5'GT 24565629 Upstream 82bp 27333 chr7 100151817 100151817 1 + C T UCEC 100151818 + 100151798 100151838 41 CTGACCTGCTGGCTGACATCGGTGGAGACCCCTTTGCTGCA CTGACCTGCTGGCTGACATTGGTGGAGACCCCTTTGCTGCA < 41bp 0.529741960952785 0.738484602934281 NA NA prediction 0.417485283962992 Functional Gain - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100151818 chr7:100151817 synonymous SNV . 0 20 hm7G_associated_SNPs_29896 0 0 0 0 1 AGFG2 chr7:100151881 5'GT 100151881 Upstream 65bp 27334 chr16 57111706 57111706 1 + G T UCEC 57111707 + 57111687 57111727 41 TTCTTTGCAGGCGCCTGGAGGAGTTGATGTGAGTGTCTGCC TTCTTTGCAGGCGCCTGGATGAGTTGATGTGAGTGTCTGCC < 41bp 0.381127225031174 0.708740666872685 NA NA prediction 0.41748133374537 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57111707 chr16:57111706 nonsynonymous SNV 0.886 2 20 hm7G_associated_SNPs_29897 0 0 0 0 2 NLRC5 chr16:57111631 3'AG 57111631 Downstream 76bp 27335 chr16 57111706 57111706 1 + G T UCEC 57111707 + 57111687 57111727 41 TTCTTTGCAGGCGCCTGGAGGAGTTGATGTGAGTGTCTGCC TTCTTTGCAGGCGCCTGGATGAGTTGATGTGAGTGTCTGCC < 41bp 0.381127225031174 0.708740666872685 NA NA prediction 0.41748133374537 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57111707 chr16:57111706 nonsynonymous SNV 0.886 2 20 hm7G_associated_SNPs_29897 0 0 0 0 2 NLRC5 chr16:57111714 5'GT 57111714 Upstream 9bp 27336 chr17 48745809 48745809 1 + C T GBM 48745810 + 48745790 48745830 41 GGCCAGTGTGTCTCTGAAACGGATCCAGCAATTCCTGAGCC GGCCAGTGTGTCTCTGAAATGGATCCAGCAATTCCTGAGCC < 41bp 0.488860400725825 0.708739522732389 NA NA prediction 0.417479045464778 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48745810 chr17:48745809 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_29898 0 0 1 0 2 ABCC3 chr17:48745791 3'AG 48745791 Downstream 19bp 27337 chr17 48745809 48745809 1 + C T GBM 48745810 + 48745790 48745830 41 GGCCAGTGTGTCTCTGAAACGGATCCAGCAATTCCTGAGCC GGCCAGTGTGTCTCTGAAATGGATCCAGCAATTCCTGAGCC < 41bp 0.488860400725825 0.708739522732389 NA NA prediction 0.417479045464778 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48745810 chr17:48745809 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_29898 0 0 1 0 2 ABCC3 chr17:48745878 5'GT 48745878 Upstream 70bp 27338 chr11 75442217 75442217 1 + G A LUSC 75442218 + 75442198 75442238 41 AGAAGACGCTGCATCCCTCGGAGGAGGAGGTGAACCAGCTG AGAAGACGCTGCATCCCTCAGAGGAGGAGGTGAACCAGCTG < 41bp 0.518324081187939 0.727063461212176 NA NA prediction 0.417478760048474 Functional Gain - MOGAT2 ENSG00000166391 CDS Human protein_coding chr11:75442218 chr11:75442217 synonymous SNV . 0 20 hm7G_associated_SNPs_29899 0 0 0 0 1 MOGAT2 chr11:75442177 3'AG 75442177 Downstream 41bp 27339 chr22 28389487 28389487 1 + C T CESC 28389488 + 28389468 28389508 41 GCGCTGCCCATTCTGGATGCGCTGCAGGGATTTCTCCACCT GCGCTGCCCATTCTGGATGTGCTGCAGGGATTTCTCCACCT < 41bp 0.501868702980715 0.710602723772924 NA NA prediction 0.417468041584417 Functional Gain - TTC28 ENSG00000100154 CDS Human processed_transcript chr22:28389488 chr22:28389487 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29901 0 0 0 0 1 TTC28-AS1 chr22:28389523 5'GT 28389523 Upstream 37bp 27340 chr12 113379390 113379390 1 + C T rs12819767 113379391 + 113379371 113379411 41 CCAGGGAGGCTCCTCGGGCCGGGGCACAGCTCTCAAGGGTG CCAGGGAGGCTCCTCGGGCTGGGGCACAGCTCTCAAGGGTG < 41bp 0.519052948099331 0.727779852482764 NA NA prediction 0.417453808766865 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379391 chr12:113379390 nonsynonymous SNV 0.905 3 20 hm7G_associated_SNPs_29903 0 0 0 0 1 OAS3 chr12:113379375 3'AG 113379375 Downstream 16bp 27341 chr17 32959803 32959803 1 + C T UCEC 32959804 + 32959784 32959824 41 CCAGGGTCACCTTCCGCTACGACGTCCTCAATGCTCCCCTG CCAGGGTCACCTTCCGCTATGACGTCCTCAATGCTCCCCTG < 41bp 0.504882198294264 0.713609076373632 NA NA prediction 0.417453756158736 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32959804 chr17:32959803 synonymous SNV . 0 20 hm7G_associated_SNPs_29904 0 0 0 0 1 TMEM132E chr17:32959723 3'AG 32959723 Downstream 81bp 27342 chr3 111730651 111730651 1 + G T ESCA 111730652 + 111730632 111730672 41 GAGGACCCTGATGGCTTTAGGCAGCGTTGCAGTCACCAAGG GAGGACCCTGATGGCTTTATGCAGCGTTGCAGTCACCAAGG < 41bp 0.701818346228267 0.91054364998106 NA NA prediction 0.417450607505586 Functional Gain - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111730652 chr3:111730651 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_29906 0 0 0 0 2 TAGLN3 chr3:111730610 3'AG 111730610 Downstream 42bp 27343 chr3 111730651 111730651 1 + G T ESCA 111730652 + 111730632 111730672 41 GAGGACCCTGATGGCTTTAGGCAGCGTTGCAGTCACCAAGG GAGGACCCTGATGGCTTTATGCAGCGTTGCAGTCACCAAGG < 41bp 0.701818346228267 0.91054364998106 NA NA prediction 0.417450607505586 Functional Gain - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111730652 chr3:111730651 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_29906 0 0 0 0 2 TAGLN3 chr3:111730712 5'GT 111730712 Upstream 62bp 27344 chr1 226027005 226027005 1 + G T LUAD 226027006 + 226026986 226027026 41 TACATTCAAGGAGGGGACTGGGGGTCCCTGATCTGCACTAA TACATTCAAGGAGGGGACTTGGGGTCCCTGATCTGCACTAA < 41bp 0.704564564083665 0.913283726987968 NA NA prediction 0.417438325808607 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226027006 chr1:226027005 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_29910 0 0 1 0 1 EPHX1 chr1:226027047 5'GT 226027047 Upstream 43bp 27345 chr1 26090397 26090397 1 + C T COAD 26090398 + 26090378 26090418 41 GCAAGGTCCTCAGGAAGATCGAAAAGCCCTTTGGCCTCTAC GCAAGGTCCTCAGGAAGATTGAAAAGCCCTTTGGCCTCTAC < 41bp 0.509422277882523 0.718140568387828 NA NA prediction 0.41743658101061 Functional Gain - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26090398 chr1:26090397 synonymous SNV . 0 20 hm7G_associated_SNPs_29911 0 0 0 0 2 MAN1C1 chr1:26090365 3'AG 26090365 Downstream 33bp 27346 chr1 26090397 26090397 1 + C T COAD 26090398 + 26090378 26090418 41 GCAAGGTCCTCAGGAAGATCGAAAAGCCCTTTGGCCTCTAC GCAAGGTCCTCAGGAAGATTGAAAAGCCCTTTGGCCTCTAC < 41bp 0.509422277882523 0.718140568387828 NA NA prediction 0.41743658101061 Functional Gain - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26090398 chr1:26090397 synonymous SNV . 0 20 hm7G_associated_SNPs_29911 0 0 0 0 2 MAN1C1 chr1:26090458 5'GT 26090458 Upstream 62bp 27347 chr11 119044752 119044752 1 + C T READ 119044753 + 119044733 119044773 41 TGTAGTGACCCGGAGGAACCGCAGGAACCAGCTGCTATCAT TGTAGTGACCCGGAGGAACTGCAGGAACCAGCTGCTATCAT < 41bp 0.5079219707374 0.716638426629511 NA NA prediction 0.417432911784222 Functional Gain - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119044753 chr11:119044752 nonsynonymous SNV 0.067 2 20 hm7G_associated_SNPs_29912 1 0 0 0 1 NLRX1 chr11:119044807 5'GT 119044807 Upstream 56bp 27348 chr6 43096945 43096945 1 + C T BLCA 43096946 + 43096926 43096966 41 CACCTTCCAGTGTGTGGCTCGGGATGATGTCACTGGAGAAG CACCTTCCAGTGTGTGGCTTGGGATGATGTCACTGGAGAAG < 41bp 0.515396830787555 0.724112223690798 NA NA prediction 0.417430785806486 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43096946 chr6:43096945 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_29913 0 0 1 1 1 PTK7 chr6:43097002 5'GT 43097002 Upstream 58bp 27349 chr7 156755730 156755730 1 + C T rs141690153 156755731 + 156755711 156755751 41 GCCGGCTCAGGTTCTGAGACGCAGCTTCGCGTCTCCTGGGA GCCGGCTCAGGTTCTGAGATGCAGCTTCGCGTCTCCTGGGA < 41bp 0.502536815026004 0.711252053942052 NA NA prediction 0.417430477832096 Functional Gain - NOM1 ENSG00000146909 CDS Human protein_coding chr7:156755731 chr7:156755730 nonsynonymous SNV 0.462 1 20 hm7G_associated_SNPs_29914 0 0 1 0 1 NOM1 chr7:156755702 3'AG 156755702 Downstream 29bp 27350 chr2 36706779 36706779 1 + C T rs146435632 36706780 + 36706760 36706800 41 ACTGCGTTGCGACCGTCTGCGGACAGACCTGCACAAACCCT ACTGCGTTGCGACCGTCTGTGGACAGACCTGCACAAACCCT < 41bp 0.534934883112434 0.743648556296636 NA NA prediction 0.417427346368405 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36706780 chr2:36706779 synonymous SNV . 0 20 hm7G_associated_SNPs_29916 0 0 1 0 1 CRIM1 chr2:36706837 5'GT 36706837 Upstream 59bp 27351 chr19 45800947 45800947 1 + C T STAD 45800948 + 45800928 45800968 41 CCACAGCTCAGGCACCCCACGGGTGCCCCCTGCCTCCCCCT CCACAGCTCAGGCACCCCATGGGTGCCCCCTGCCTCCCCCT < 41bp 0.503351875447743 0.712062480147212 NA NA prediction 0.417421209398937 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45800948 chr19:45800947 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_29917 0 0 1 0 1 MARK4 chr19:45800934 3'AG 45800934 Downstream 14bp 27352 chr1 27630137 27630137 1 + C T PRAD 27630138 + 27630118 27630158 41 AGAAGGGACCTGGTGGCGGCGCCCCAGTCCGCCTCCGCAGC AGAAGGGACCTGGTGGCGGTGCCCCAGTCCGCCTCCGCAGC < 41bp 0.512096759808971 0.720804024747131 NA NA prediction 0.41741452987632 Functional Gain - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27630138 chr1:27630137 synonymous SNV . 0 20 hm7G_associated_SNPs_29918 0 0 1 0 1 WDTC1 chr1:27630112 3'AG 27630112 Downstream 26bp 27353 chr2 25360314 25360314 1 + C T rs2304568 25360315 + 25360295 25360335 41 TGCTGGCCCTCATCAGCATCGAGCTGGCTAACGAGGAGGTG TGCTGGCCCTCATCAGCATTGAGCTGGCTAACGAGGAGGTG < 41bp 0.498762541779154 0.708702882202512 NA NA prediction 0.417405764405024 Functional Gain - EFR3B ENSG00000084710 CDS Human protein_coding chr2:25360315 chr2:25360314 synonymous SNV . 0 20 hm7G_associated_SNPs_29920 0 0 0 0 1 EFR3B chr2:25360371 5'GT 25360371 Upstream 58bp 27354 chr10 95347054 95347054 1 + G A SKCM 95347055 + 95347035 95347075 41 AGATCCGCGTGTCCCAGCAGGACTTCCGGCTCTTCCGCACC AGATCCGCGTGTCCCAGCAAGACTTCCGGCTCTTCCGCACC < 41bp 0.505383360616763 0.714084972040484 NA NA prediction 0.417403222847442 Functional Gain - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95347055 chr10:95347054 synonymous SNV . 0 20 hm7G_associated_SNPs_29922 0 0 0 0 1 FFAR4 chr10:95346977 3'AG 95346977 Downstream 78bp 27355 chr6 159181747 159181747 1 + C T SKCM 159181748 + 159181728 159181768 41 TAAGCTGGTTCTCCCTTCACGGCCCAGAAAACTCCAAGAGG TAAGCTGGTTCTCCCTTCATGGCCCAGAAAACTCCAAGAGG < 41bp 0.523536853239976 0.732237060896634 NA NA prediction 0.417400415313315 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181748 chr6:159181747 nonsynonymous SNV 0.030 1 20 hm7G_associated_SNPs_29923 0 0 0 0 2 SYTL3 chr6:159181672 3'AG 159181672 Downstream 76bp 27356 chr6 159181747 159181747 1 + C T SKCM 159181748 + 159181728 159181768 41 TAAGCTGGTTCTCCCTTCACGGCCCAGAAAACTCCAAGAGG TAAGCTGGTTCTCCCTTCATGGCCCAGAAAACTCCAAGAGG < 41bp 0.523536853239976 0.732237060896634 NA NA prediction 0.417400415313315 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159181748 chr6:159181747 nonsynonymous SNV 0.030 1 20 hm7G_associated_SNPs_29923 0 0 0 0 2 SYTL3 chr6:159181777 5'GT 159181777 Upstream 31bp 27357 chr22 41566520 41566520 1 + G T STAD 41566521 + 41566501 41566541 41 CCCAAGCGACTGCAGGAATGGTACAAAAAAATGCTTGACAA CCCAAGCGACTGCAGGAATTGTACAAAAAAATGCTTGACAA < 41bp 0.374031213935185 0.7086972057132 NA NA prediction 0.417394411426401 Functional Gain - EP300 ENSG00000100393 CDS Human protein_coding chr22:41566521 chr22:41566520 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_29925 0 0 1 0 1 EP300 chr22:41566575 5'GT 41566575 Upstream 56bp 27358 chr18 2909722 2909722 1 + C T STAD 2909723 + 2909703 2909743 41 TCTCTGGTGTCTTTTTCTGCGGGGCTCACCCAGAAGCCTTT TCTCTGGTGTCTTTTTCTGTGGGGCTCACCCAGAAGCCTTT < 41bp 0.515880989011187 0.724575480832264 NA NA prediction 0.417388983642154 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2909723 chr18:2909722 nonsynonymous SNV 0.304 0 20 hm7G_associated_SNPs_29927 0 0 1 0 2 EMILIN2 chr18:2909689 3'AG 2909689 Downstream 34bp 27359 chr18 2909722 2909722 1 + C T STAD 2909723 + 2909703 2909743 41 TCTCTGGTGTCTTTTTCTGCGGGGCTCACCCAGAAGCCTTT TCTCTGGTGTCTTTTTCTGTGGGGCTCACCCAGAAGCCTTT < 41bp 0.515880989011187 0.724575480832264 NA NA prediction 0.417388983642154 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2909723 chr18:2909722 nonsynonymous SNV 0.304 0 20 hm7G_associated_SNPs_29927 0 0 1 0 2 EMILIN2 chr18:2909817 5'GT 2909817 Upstream 96bp 27360 chr7 94056983 94056983 1 + C T COAD 94056984 + 94056964 94057004 41 CTGGACCTCCAGGTGTAAGCGGTGGTGGTTATGACTTTGGT CTGGACCTCCAGGTGTAAGTGGTGGTGGTTATGACTTTGGT < 41bp 0.509164264901944 0.717855301675288 NA NA prediction 0.41738207354669 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94056984 chr7:94056983 synonymous SNV . 0 20 hm7G_associated_SNPs_29929 0 0 0 0 1 COL1A2 chr7:94056939 3'AG 94056939 Downstream 45bp 27361 chr12 81545808 81545808 1 + G T HNSC 81545809 + 81545789 81545829 41 GCAGCTTCTGACTTAGGCTGGGTTGTTGGACATTCCTATAT GCAGCTTCTGACTTAGGCTTGGTTGTTGGACATTCCTATAT < 41bp 0.367725893718983 0.708688869535954 NA NA prediction 0.417377739071907 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81545809 chr12:81545808 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29931 0 0 1 0 2 ACSS3 chr12:81545780 3'AG 81545780 Downstream 29bp 27362 chr12 81545808 81545808 1 + G T HNSC 81545809 + 81545789 81545829 41 GCAGCTTCTGACTTAGGCTGGGTTGTTGGACATTCCTATAT GCAGCTTCTGACTTAGGCTTGGTTGTTGGACATTCCTATAT < 41bp 0.367725893718983 0.708688869535954 NA NA prediction 0.417377739071907 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81545809 chr12:81545808 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29931 0 0 1 0 2 ACSS3 chr12:81545875 5'GT 81545875 Upstream 68bp 27363 chr15 101152611 101152611 1 + C T UCEC 101152612 + 101152592 101152632 41 AGGAAAGGAAAGATGTGTTCGGGTTTTTCTAGAACACGGAG AGGAAAGGAAAGATGTGTTTGGGTTTTTCTAGAACACGGAG < 41bp 0.518681514951049 0.727366026072731 NA NA prediction 0.417369022243365 Functional Gain - ASB7 ENSG00000183475 CDS Human protein_coding chr15:101152612 chr15:101152611 nonsynonymous SNV 0.947 4 20 hm7G_associated_SNPs_29932 0 0 1 0 1 ASB7 chr15:101152632 5'GT 101152632 Upstream 22bp 27364 chr19 36352831 36352831 1 + C T COAD 36352832 + 36352812 36352852 41 ATCTCTGTGCTACACATTTCGGGGACCCAGGAGTCTGACTT ATCTCTGTGCTACACATTTTGGGGACCCAGGAGTCTGACTT < 41bp 0.508756087338232 0.717435102635498 NA NA prediction 0.417358030594532 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352832 chr19:36352831 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_29933 0 0 0 0 1 KIRREL2 chr19:36352926 5'GT 36352926 Upstream 96bp 27365 chr17 27016529 27016529 1 + C T UCEC 27016530 + 27016510 27016550 41 AATCTTGGAAAACCCAGAGCGACTGAAAGACCTGGACCTTG AATCTTGGAAAACCCAGAGTGACTGAAAGACCTGGACCTTG < 41bp 0.511637896469194 0.720315979624847 NA NA prediction 0.417356166311305 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27016530 chr17:27016529 stopgain 0.976 1 20 hm7G_associated_SNPs_29934 0 0 1 0 1 SUPT6H chr17:27016579 5'GT 27016579 Upstream 51bp 27366 chr2 242430520 242430520 1 + C T UCEC 242430521 + 242430501 242430541 41 ATGCTGGACCTGAACTCCGCGATCCAAGCAGCCAAGAGTGG ATGCTGGACCTGAACTCCGTGATCCAAGCAGCCAAGAGTGG < 41bp 0.491069648203936 0.708675327831545 NA NA prediction 0.417350655663089 Functional Gain - FARP2 ENSG00000006607 CDS Human protein_coding chr2:242430521 chr2:242430520 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_29937 0 0 1 0 2 FARP2 chr2:242430476 3'AG 242430476 Downstream 45bp 27367 chr2 242430520 242430520 1 + C T UCEC 242430521 + 242430501 242430541 41 ATGCTGGACCTGAACTCCGCGATCCAAGCAGCCAAGAGTGG ATGCTGGACCTGAACTCCGTGATCCAAGCAGCCAAGAGTGG < 41bp 0.491069648203936 0.708675327831545 NA NA prediction 0.417350655663089 Functional Gain - FARP2 ENSG00000006607 CDS Human protein_coding chr2:242430521 chr2:242430520 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_29937 0 0 1 0 2 FARP2 chr2:242430594 5'GT 242430594 Upstream 75bp 27368 chr13 28841001 28841001 1 + C T GBM 28841002 + 28840982 28841022 41 TGATCTGCCATATTGCCTTCGGAGGATACATGGTAAGGAAG TGATCTGCCATATTGCCTTTGGAGGATACATGGTAAGGAAG < 41bp 0.509001360601146 0.717675355878501 NA NA prediction 0.417347990554711 Functional Gain - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28841002 chr13:28841001 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29939 0 0 1 0 1 PAN3 chr13:28841013 5'GT 28841013 Upstream 13bp 27369 chr19 971949 971949 1 + G A rs1051505 971950 + 971930 971970 41 AGGAGGCGGCGGCGGCGGCGGCAGCAGCAGCAACGCAGGCG AGGAGGCGGCGGCGGCGGCAGCAGCAGCAGCAACGCAGGCG < 41bp 0.555571240191811 0.764244504885761 NA NA prediction 0.417346529387901 Functional Gain - ARID3A ENSG00000116017 CDS Human protein_coding chr19:971950 chr19:971949 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_29940 0 0 0 0 1 ARID3A chr19:971878 3'AG 971878 Downstream 72bp 27370 chr6 37339288 37339288 1 + G T LGG 37339289 + 37339269 37339309 41 TTTTGTTTTGGCTTTGCAGGGTTTGGAGATAGCCCAAGGAG TTTTGTTTTGGCTTTGCAGTGTTTGGAGATAGCCCAAGGAG < 41bp 0.691491578012288 0.900156570278634 NA NA prediction 0.417329984532694 Functional Gain - RNF8 ENSG00000112130 CDS Human protein_coding chr6:37339289 chr6:37339288 nonsynonymous SNV 0.807 2 20 hm7G_associated_SNPs_29943 0 0 1 0 2 RNF8 chr6:37339288 5'GT 37339288 Upstream 1bp 27371 chr6 37339288 37339288 1 + G T LGG 37339289 + 37339269 37339309 41 TTTTGTTTTGGCTTTGCAGGGTTTGGAGATAGCCCAAGGAG TTTTGTTTTGGCTTTGCAGTGTTTGGAGATAGCCCAAGGAG < 41bp 0.691491578012288 0.900156570278634 NA NA prediction 0.417329984532694 Functional Gain - RNF8 ENSG00000112130 CDS Human protein_coding chr6:37339289 chr6:37339288 nonsynonymous SNV 0.807 2 20 hm7G_associated_SNPs_29943 0 0 1 0 2 RNF8 chr6:37339350 5'GT 37339350 Upstream 63bp 27372 chr20 17437010 17437010 1 + C T READ 17437011 + 17436991 17437031 41 AGGCAACCACAGATTTGTACGGCAACTGCACTCTGAGGCAT AGGCAACCACAGATTTGTATGGCAACTGCACTCTGAGGCAT < 41bp 0.491794302674906 0.708664791739631 NA NA prediction 0.417329583479261 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17437011 chr20:17437010 synonymous SNV . 0 20 hm7G_associated_SNPs_29944 0 0 0 0 2 PCSK2 chr20:17436993 3'AG 17436993 Downstream 18bp 27373 chr20 17437010 17437010 1 + C T READ 17437011 + 17436991 17437031 41 AGGCAACCACAGATTTGTACGGCAACTGCACTCTGAGGCAT AGGCAACCACAGATTTGTATGGCAACTGCACTCTGAGGCAT < 41bp 0.491794302674906 0.708664791739631 NA NA prediction 0.417329583479261 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17437011 chr20:17437010 synonymous SNV . 0 20 hm7G_associated_SNPs_29944 0 0 0 0 2 PCSK2 chr20:17437093 5'GT 17437093 Upstream 84bp 27374 chr15 66607522 66607522 1 + G A COAD 66607523 + 66607503 66607543 41 ACTGTGACGACAAGGCTTCGGGCGAGTCCCCAAGTGAGCCC ACTGTGACGACAAGGCTTCAGGCGAGTCCCCAAGTGAGCCC < 41bp 0.507973023484936 0.716636149462644 NA NA prediction 0.417326251955416 Functional Gain - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66607523 chr15:66607522 synonymous SNV . 0 20 hm7G_associated_SNPs_29945 0 0 1 0 1 DIS3L chr15:66607553 5'GT 66607553 Upstream 32bp 27375 chr12 51089667 51089667 1 + G T UCEC 51089668 + 51089648 51089688 41 AAATGTCGGGACTTGCACTGGGCTATGATGGCACATCGGGA AAATGTCGGGACTTGCACTTGGCTATGATGGCACATCGGGA < 41bp 0.363593760077816 0.708661805425507 NA NA prediction 0.417323610851014 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51089668 chr12:51089667 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29947 0 0 1 0 2 DIP2B chr12:51089631 3'AG 51089631 Downstream 37bp 27376 chr12 51089667 51089667 1 + G T UCEC 51089668 + 51089648 51089688 41 AAATGTCGGGACTTGCACTGGGCTATGATGGCACATCGGGA AAATGTCGGGACTTGCACTTGGCTATGATGGCACATCGGGA < 41bp 0.363593760077816 0.708661805425507 NA NA prediction 0.417323610851014 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51089668 chr12:51089667 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29947 0 0 1 0 2 DIP2B chr12:51089750 5'GT 51089750 Upstream 84bp 27377 chr7 106826323 106826323 1 + C T BLCA 106826324 + 106826304 106826344 41 CCACCAGTGTCCTCTTCTTCGAAGAGTGAACCAGCCTTCCC CCACCAGTGTCCTCTTCTTTGAAGAGTGAACCAGCCTTCCC < 41bp 0.516497340117865 0.725158377620871 NA NA prediction 0.417322075006013 Functional Gain - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106826324 chr7:106826323 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_29948 0 0 1 0 1 HBP1 chr7:106826246 3'AG 106826246 Downstream 78bp 27378 chr6 45390604 45390604 1 + C T STAD 45390605 + 45390585 45390625 41 TCATCGCCGACCACCCGGCCGAACTCGTCCGCACCGACAGC TCATCGCCGACCACCCGGCTGAACTCGTCCGCACCGACAGC < 41bp 0.503896463786786 0.712556466361081 NA NA prediction 0.417320005148592 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45390605 chr6:45390604 synonymous SNV . 0 20 hm7G_associated_SNPs_29949 0 0 0 0 1 RUNX2 chr6:45390694 5'GT 45390694 Upstream 91bp 27379 chrX 155233163 155233163 1 + C T SKCM 155233164 + 155233144 155233184 41 CCAACAACATTCTCAGGATCGATTGCCACTGGTCTGCCCCA CCAACAACATTCTCAGGATTGATTGCCACTGGTCTGCCCCA < 41bp 0.500392287497978 0.709051633306085 NA NA prediction 0.417318691616214 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155233164 chrX:155233163 synonymous SNV . 0 20 hm7G_associated_SNPs_29950 0 0 0 0 2 IL9R chrX:155233114 3'AG 155233114 Downstream 50bp 27380 chrX 155233163 155233163 1 + C T SKCM 155233164 + 155233144 155233184 41 CCAACAACATTCTCAGGATCGATTGCCACTGGTCTGCCCCA CCAACAACATTCTCAGGATTGATTGCCACTGGTCTGCCCCA < 41bp 0.500392287497978 0.709051633306085 NA NA prediction 0.417318691616214 Functional Gain - IL9R ENSG00000124334 CDS Human protein_coding chrX:155233164 chrX:155233163 synonymous SNV . 0 20 hm7G_associated_SNPs_29950 0 0 0 0 2 IL9R chrX:155233225 5'GT 155233225 Upstream 63bp 27381 chr19 55377853 55377853 1 + G A SARC 55377854 + 55377834 55377874 41 TAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATAGG TAATGGACCAAGAGCCTGCAGGGGACAGAACAGTGAATAGG < 41bp 0.500762029606379 0.709418085864875 NA NA prediction 0.417312112516991 Functional Gain - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377854 chr19:55377853 synonymous SNV . 0 20 hm7G_associated_SNPs_29951 0 0 0 0 2 KIR3DL2 chr19:55377825 3'AG 55377825 Downstream 29bp 27382 chr19 55377853 55377853 1 + G A SARC 55377854 + 55377834 55377874 41 TAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATAGG TAATGGACCAAGAGCCTGCAGGGGACAGAACAGTGAATAGG < 41bp 0.500762029606379 0.709418085864875 NA NA prediction 0.417312112516991 Functional Gain - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377854 chr19:55377853 synonymous SNV . 0 20 hm7G_associated_SNPs_29951 0 0 0 0 2 KIR3DL2 chr19:55377877 5'GT 55377877 Upstream 25bp 27383 chr9 100234591 100234591 1 + C T CESC 100234592 + 100234572 100234612 41 CAGGCTTGGAAGTCCTAAGCGATGACCCTGATCTAGTGAAG CAGGCTTGGAAGTCCTAAGTGATGACCCTGATCTAGTGAAG < 41bp 0.524797531102201 0.733447050793232 NA NA prediction 0.417299039382062 Functional Gain - TDRD7 ENSG00000196116 CDS Human protein_coding chr9:100234592 chr9:100234591 synonymous SNV . 0 20 hm7G_associated_SNPs_29953 0 0 0 0 1 TDRD7 chr9:100234575 3'AG 100234575 Downstream 17bp 27384 chr13 113465017 113465017 1 + C T LGG 113465018 + 113464998 113465038 41 TCAGCACGGCAAGCTCGTTCGGAAACAAAGTCGAAAGCTGC TCAGCACGGCAAGCTCGTTTGGAAACAAAGTCGAAAGCTGC < 41bp 0.528530023156718 0.73717903593943 NA NA prediction 0.417298025565424 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113465018 chr13:113465017 nonsynonymous SNV 0.683 3 20 hm7G_associated_SNPs_29954 0 0 1 0 1 ATP11A chr13:113465040 5'GT 113465040 Upstream 24bp 27385 chr1 65858213 65858213 1 + C T LUSC 65858214 + 65858194 65858234 41 CTTCTGACACTTTCCAGTCCGCATGGCAATGCCAATGGTGA CTTCTGACACTTTCCAGTCTGCATGGCAATGCCAATGGTGA < 41bp 0.494728967913191 0.708646301836497 NA NA prediction 0.417292603672993 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65858214 chr1:65858213 nonsynonymous SNV 0.928 2 20 hm7G_associated_SNPs_29957 0 0 1 0 1 DNAJC6 chr1:65858114 3'AG 65858114 Downstream 100bp 27386 chr14 53100599 53100599 1 + C T rs61747576 53100600 + 53100580 53100620 41 GTTCCAGAGCTTACTTTTTCGACAATCCAAGACGATATGAT GTTCCAGAGCTTACTTTTTTGACAATCCAAGACGATATGAT < 41bp 0.520479340955696 0.729120403752149 NA NA prediction 0.417282125592905 Functional Gain - GPR137C ENSG00000180998 CDS Human protein_coding chr14:53100600 chr14:53100599 synonymous SNV . 0 20 hm7G_associated_SNPs_29959 0 0 1 0 2 GPR137C chr14:53100546 3'AG 53100546 Downstream 54bp 27387 chr14 53100599 53100599 1 + C T rs61747576 53100600 + 53100580 53100620 41 GTTCCAGAGCTTACTTTTTCGACAATCCAAGACGATATGAT GTTCCAGAGCTTACTTTTTTGACAATCCAAGACGATATGAT < 41bp 0.520479340955696 0.729120403752149 NA NA prediction 0.417282125592905 Functional Gain - GPR137C ENSG00000180998 CDS Human protein_coding chr14:53100600 chr14:53100599 synonymous SNV . 0 20 hm7G_associated_SNPs_29959 0 0 1 0 2 GPR137C chr14:53100664 5'GT 53100664 Upstream 66bp 27388 chr4 120177653 120177653 1 + C T LGG 120177654 + 120177634 120177674 41 ACCTTTTACAGAATTTGTGCGGTACATTTCTACAACAGCCT ACCTTTTACAGAATTTGTGTGGTACATTTCTACAACAGCCT < 41bp 0.497793203033436 0.708640024678042 NA NA prediction 0.417280049356084 Functional Gain - USP53 ENSG00000145390 CDS Human protein_coding chr4:120177654 chr4:120177653 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_29960 0 0 0 0 1 USP53 chr4:120177678 5'GT 120177678 Upstream 26bp 27389 chr17 5266301 5266301 1 + C T rs374594228 5266302 + 5266282 5266322 41 CAGATTCAGGAGGCTGAAACGAGAGACCAGGTGAGTTTCTT CAGATTCAGGAGGCTGAAATGAGAGACCAGGTGAGTTTCTT < 41bp 0.506104099257588 0.71474148771552 NA NA prediction 0.417274776915864 Functional Gain - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5266302 chr17:5266301 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_29962 0 0 1 0 2 RABEP1 chr17:5266207 3'AG 5266207 Downstream 95bp 27390 chr17 5266301 5266301 1 + C T rs374594228 5266302 + 5266282 5266322 41 CAGATTCAGGAGGCTGAAACGAGAGACCAGGTGAGTTTCTT CAGATTCAGGAGGCTGAAATGAGAGACCAGGTGAGTTTCTT < 41bp 0.506104099257588 0.71474148771552 NA NA prediction 0.417274776915864 Functional Gain - RABEP1 ENSG00000029725 CDS Human protein_coding chr17:5266302 chr17:5266301 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_29962 0 0 1 0 2 RABEP1 chr17:5266311 5'GT 5266311 Upstream 11bp 27391 chr13 50092190 50092190 1 + G T UCEC 50092191 + 50092171 50092211 41 TAAAAGAGGAGCCACCGTGGGATGTGATTTAAAAAACTGTA TAAAAGAGGAGCCACCGTGTGATGTGATTTAAAAAACTGTA < 41bp 0.689854303967492 0.89849147279849 NA NA prediction 0.417274337661996 Functional Gain - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50092191 chr13:50092190 stopgain 0.597 1 20 hm7G_associated_SNPs_29963 0 0 0 0 2 PHF11;SETDB2-PHF11 chr13:50092154 3'AG 50092154 Downstream 37bp 27392 chr13 50092190 50092190 1 + G T UCEC 50092191 + 50092171 50092211 41 TAAAAGAGGAGCCACCGTGGGATGTGATTTAAAAAACTGTA TAAAAGAGGAGCCACCGTGTGATGTGATTTAAAAAACTGTA < 41bp 0.689854303967492 0.89849147279849 NA NA prediction 0.417274337661996 Functional Gain - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50092191 chr13:50092190 stopgain 0.597 1 20 hm7G_associated_SNPs_29963 0 0 0 0 2 PHF11;SETDB2-PHF11 chr13:50092287 5'GT 50092287 Upstream 98bp 27393 chr21 47540456 47540456 1 + G A UCEC 47540457 + 47540437 47540477 41 TGGCCCTGAGGGGCCCCGCGGCCTGGCTGGAGAGGTTGGCA TGGCCCTGAGGGGCCCCGCAGCCTGGCTGGAGAGGTTGGCA < 41bp 0.571973244719931 0.780610205281469 NA NA prediction 0.417273921123078 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47540457 chr21:47540456 nonsynonymous SNV 0.614 5 20 hm7G_associated_SNPs_29964 0 0 0 0 2 COL6A2 chr21:47540429 3'AG 47540429 Downstream 28bp 27394 chr21 47540456 47540456 1 + G A UCEC 47540457 + 47540437 47540477 41 TGGCCCTGAGGGGCCCCGCGGCCTGGCTGGAGAGGTTGGCA TGGCCCTGAGGGGCCCCGCAGCCTGGCTGGAGAGGTTGGCA < 41bp 0.571973244719931 0.780610205281469 NA NA prediction 0.417273921123078 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47540457 chr21:47540456 nonsynonymous SNV 0.614 5 20 hm7G_associated_SNPs_29964 0 0 0 0 2 COL6A2 chr21:47540491 5'GT 47540491 Upstream 36bp 27395 chrX 18748396 18748396 1 + C T UCEC 18748397 + 18748377 18748417 41 TCACCATCTTCCAGTCCATCGAATATGCTGATGAACAAGGC TCACCATCTTCCAGTCCATTGAATATGCTGATGAACAAGGC < 41bp 0.512320823897059 0.720957505281473 NA NA prediction 0.417273362768829 Functional Gain - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18748397 chrX:18748396 synonymous SNV . 0 20 hm7G_associated_SNPs_29965 0 0 0 0 2 PPEF1 chrX:18748299 3'AG 18748299 Downstream 98bp 27396 chrX 18748396 18748396 1 + C T UCEC 18748397 + 18748377 18748417 41 TCACCATCTTCCAGTCCATCGAATATGCTGATGAACAAGGC TCACCATCTTCCAGTCCATTGAATATGCTGATGAACAAGGC < 41bp 0.512320823897059 0.720957505281473 NA NA prediction 0.417273362768829 Functional Gain - PPEF1 ENSG00000086717 CDS Human protein_coding chrX:18748397 chrX:18748396 synonymous SNV . 0 20 hm7G_associated_SNPs_29965 0 0 0 0 2 PPEF1 chrX:18748426 5'GT 18748426 Upstream 31bp 27397 chr5 75923288 75923288 1 + C T UCEC 75923289 + 75923269 75923309 41 ATGAGATACAGCAAGCCGTCGATGATGCCAACGTGGACAAG ATGAGATACAGCAAGCCGTTGATGATGCCAACGTGGACAAG < 41bp 0.520996082049682 0.729630547880414 NA NA prediction 0.417268931661465 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75923289 chr5:75923288 synonymous SNV . 0 20 hm7G_associated_SNPs_29967 0 0 0 0 2 IQGAP2 chr5:75923235 3'AG 75923235 Downstream 54bp 27398 chr5 75923288 75923288 1 + C T UCEC 75923289 + 75923269 75923309 41 ATGAGATACAGCAAGCCGTCGATGATGCCAACGTGGACAAG ATGAGATACAGCAAGCCGTTGATGATGCCAACGTGGACAAG < 41bp 0.520996082049682 0.729630547880414 NA NA prediction 0.417268931661465 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75923289 chr5:75923288 synonymous SNV . 0 20 hm7G_associated_SNPs_29967 0 0 0 0 2 IQGAP2 chr5:75923325 5'GT 75923325 Upstream 38bp 27399 chr3 108568020 108568020 1 + G T UCEC 108568021 + 108568001 108568041 41 TTAATTCCCAAGAACCAATGGATGAAAATTGCTATGAACAA TTAATTCCCAAGAACCAATTGATGAAAATTGCTATGAACAA < 41bp 0.671239241730339 0.87987243141373 NA NA prediction 0.417266379366782 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108568021 chr3:108568020 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_29968 0 0 0 0 2 TRAT1 chr3:108568013 3'AG 108568013 Downstream 8bp 27400 chr3 108568020 108568020 1 + G T UCEC 108568021 + 108568001 108568041 41 TTAATTCCCAAGAACCAATGGATGAAAATTGCTATGAACAA TTAATTCCCAAGAACCAATTGATGAAAATTGCTATGAACAA < 41bp 0.671239241730339 0.87987243141373 NA NA prediction 0.417266379366782 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108568021 chr3:108568020 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_29968 0 0 0 0 2 TRAT1 chr3:108568101 5'GT 108568101 Upstream 82bp 27401 chr6 42974956 42974956 1 + C T UCEC 42974957 + 42974937 42974977 41 TCAGTGAACCTCTTCCGGACGCTGCCACCTTCATCGAATCC TCAGTGAACCTCTTCCGGATGCTGCCACCTTCATCGAATCC < 41bp 0.526470726428308 0.735103176141604 NA NA prediction 0.417264899426591 Functional Gain - PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974957 chr6:42974956 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29969 0 0 1 0 2 PPP2R5D chr6:42974934 3'AG 42974934 Downstream 23bp 27402 chr6 42974956 42974956 1 + C T UCEC 42974957 + 42974937 42974977 41 TCAGTGAACCTCTTCCGGACGCTGCCACCTTCATCGAATCC TCAGTGAACCTCTTCCGGATGCTGCCACCTTCATCGAATCC < 41bp 0.526470726428308 0.735103176141604 NA NA prediction 0.417264899426591 Functional Gain - PPP2R5D ENSG00000112640 CDS Human protein_coding chr6:42974957 chr6:42974956 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_29969 0 0 1 0 2 PPP2R5D chr6:42975044 5'GT 42975044 Upstream 89bp 27403 chr1 36030854 36030854 1 + G A SKCM 36030855 + 36030835 36030875 41 GGGAACACCAGCATCCCGAGGGTTCTTCGCAGCTGCCATCC GGGAACACCAGCATCCCGAAGGTTCTTCGCAGCTGCCATCC < 41bp 0.568450901910589 0.77708220199552 NA NA prediction 0.417262600169862 Functional Gain - NCDN ENSG00000020129 CDS Human protein_coding chr1:36030855 chr1:36030854 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_29971 0 0 0 0 1 NCDN chr1:36030828 3'AG 36030828 Downstream 27bp 27404 chr12 110013842 110013842 1 + C T COAD 110013843 + 110013823 110013863 41 GAACTTGAGAACATTCCTCCGGCTTCAACCCCACAGCAATG GAACTTGAGAACATTCCTCTGGCTTCAACCCCACAGCAATG < 41bp 0.491363069063895 0.708630417971006 NA NA prediction 0.417260835942011 Functional Gain - MVK ENSG00000110921 CDS Human protein_coding chr12:110013843 chr12:110013842 nonsynonymous SNV 0.972 2 20 hm7G_associated_SNPs_29972 0 0 1 0 1 MVK chr12:110013803 3'AG 110013803 Downstream 40bp 27405 chr2 101885682 101885682 1 + G T SARC 101885683 + 101885663 101885703 41 TTTTTCCTTTTTCAGAATCGGTTGGTGCGTCTTGTGTGTGT TTTTTCCTTTTTCAGAATCTGTTGGTGCGTCTTGTGTGTGT < 41bp 0.418005261333003 0.708622252231826 NA NA prediction 0.417244504463653 Functional Gain - CNOT11 ENSG00000158435 CDS Human protein_coding chr2:101885683 chr2:101885682 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_29973 0 0 1 0 1 CNOT11 chr2:101885678 3'AG 101885678 Downstream 5bp 27406 chr1 170964579 170964579 1 + C T LUAD 170964580 + 170964560 170964600 41 CTTGGTTCCTACAGGAAAGCGGTGGCCCAGTATTTCCCCCA CTTGGTTCCTACAGGAAAGTGGTGGCCCAGTATTTCCCCCA < 41bp 0.523554697741017 0.73217652263724 NA NA prediction 0.417243649792446 Functional Gain - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170964580 chr1:170964579 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_29974 0 0 0 0 2 MROH9 chr1:170964530 3'AG 170964530 Downstream 50bp 27407 chr1 170964579 170964579 1 + C T LUAD 170964580 + 170964560 170964600 41 CTTGGTTCCTACAGGAAAGCGGTGGCCCAGTATTTCCCCCA CTTGGTTCCTACAGGAAAGTGGTGGCCCAGTATTTCCCCCA < 41bp 0.523554697741017 0.73217652263724 NA NA prediction 0.417243649792446 Functional Gain - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170964580 chr1:170964579 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_29974 0 0 0 0 2 MROH9 chr1:170964672 5'GT 170964672 Upstream 94bp 27408 chr11 134114850 134114850 1 + G T LUSC 134114851 + 134114831 134114871 41 GGAGAGTCCATCCCGATCCGGCTCTTCCTGGCCGGGTATGA GGAGAGTCCATCCCGATCCTGCTCTTCCTGGCCGGGTATGA < 41bp 0.355623816116205 0.708621345382732 NA NA prediction 0.417242690765464 Functional Gain - VPS26B ENSG00000151502 CDS Human protein_coding chr11:134114851 chr11:134114850 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_29975 0 0 0 0 1 VPS26B chr11:134114832 3'AG 134114832 Downstream 19bp 27409 chr1 36359375 36359375 1 + C T BLCA 36359376 + 36359356 36359396 41 CGGCTTTCACCAGTCTGTGCGCCCTGCCATGTGGAAGATGA CGGCTTTCACCAGTCTGTGTGCCCTGCCATGTGGAAGATGA < 41bp 0.521224307071543 0.729845609411055 NA NA prediction 0.417242604679025 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36359376 chr1:36359375 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_29976 0 0 1 0 1 AGO1 chr1:36359411 5'GT 36359411 Upstream 37bp 27410 chr19 18239701 18239701 1 + G A PAAD 18239702 + 18239682 18239722 41 GCCCTGGTCGGCCAGTCACGGAGGAAGCCATGCGAAAGCGA GCCCTGGTCGGCCAGTCACAGAGGAAGCCATGCGAAAGCGA < 41bp 0.509667362658589 0.718286732736717 NA NA prediction 0.417238740156256 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18239702 chr19:18239701 nonsynonymous SNV 0.727 0 20 hm7G_associated_SNPs_29977 0 0 1 0 2 MAST3 chr19:18239676 3'AG 18239676 Downstream 26bp 27411 chr19 18239701 18239701 1 + G A PAAD 18239702 + 18239682 18239722 41 GCCCTGGTCGGCCAGTCACGGAGGAAGCCATGCGAAAGCGA GCCCTGGTCGGCCAGTCACAGAGGAAGCCATGCGAAAGCGA < 41bp 0.509667362658589 0.718286732736717 NA NA prediction 0.417238740156256 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18239702 chr19:18239701 nonsynonymous SNV 0.727 0 20 hm7G_associated_SNPs_29977 0 0 1 0 2 MAST3 chr19:18239761 5'GT 18239761 Upstream 61bp 27412 chr1 227171903 227171903 1 + G A UCEC 227171904 + 227171884 227171924 41 CTGGCTTCCCCCTGGACCAGGCCGAAGGGCTCAGCCAGGAG CTGGCTTCCCCCTGGACCAAGCCGAAGGGCTCAGCCAGGAG < 41bp 0.532862900170676 0.74148045042207 NA NA prediction 0.417235100502788 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171904 chr1:227171903 synonymous SNV . 0 20 hm7G_associated_SNPs_29978 0 0 1 0 1 COQ8A chr1:227171936 5'GT 227171936 Upstream 34bp 27413 chr16 15781232 15781232 1 + C T STAD 15781233 + 15781213 15781253 41 CTGCTTTTCTCTTCGCCAGCGCCACGATCATGTCTCTCGAA CTGCTTTTCTCTTCGCCAGTGCCACGATCATGTCTCTCGAA < 41bp 0.526420686643164 0.735035657672501 NA NA prediction 0.417229942058674 Functional Gain - NDE1 ENSG00000072864 CDS Human protein_coding chr16:15781233 chr16:15781232 synonymous SNV . 0 20 hm7G_associated_SNPs_29980 0 0 1 0 1 NDE1 chr16:15781232 3'AG 15781232 Downstream 1bp 27414 chr19 54695642 54695642 1 + G A rs138586360 54695643 + 54695623 54695663 41 GCCTTGGCAGCTGAGGCCCGGGAGACCCGTCGTCAGGAGCT GCCTTGGCAGCTGAGGCCCAGGAGACCCGTCGTCAGGAGCT < 41bp 0.563795762447985 0.772410686889158 NA NA prediction 0.417229848882347 Functional Gain - TSEN34 ENSG00000170892 CDS Human protein_coding chr19:54695643 chr19:54695642 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_29982 0 0 1 0 1 TSEN34 chr19:54695572 3'AG 54695572 Downstream 71bp 27415 chr21 33036154 33036154 1 + G T LUAD 33036155 + 33036135 33036175 41 CATTAAAGGACTGACTGAAGGCCTGCATGGATTCCATGTTC CATTAAAGGACTGACTGAATGCCTGCATGGATTCCATGTTC < 41bp 0.693789239410967 0.902403884614951 NA NA prediction 0.417229290407968 Functional Gain - SOD1 ENSG00000142168 CDS Human protein_coding chr21:33036155 chr21:33036154 nonsynonymous SNV 0.872 5 20 hm7G_associated_SNPs_29983 0 0 1 1 2 SOD1 chr21:33036103 3'AG 33036103 Downstream 52bp 27416 chr21 33036154 33036154 1 + G T LUAD 33036155 + 33036135 33036175 41 CATTAAAGGACTGACTGAAGGCCTGCATGGATTCCATGTTC CATTAAAGGACTGACTGAATGCCTGCATGGATTCCATGTTC < 41bp 0.693789239410967 0.902403884614951 NA NA prediction 0.417229290407968 Functional Gain - SOD1 ENSG00000142168 CDS Human protein_coding chr21:33036155 chr21:33036154 nonsynonymous SNV 0.872 5 20 hm7G_associated_SNPs_29983 0 0 1 1 2 SOD1 chr21:33036199 5'GT 33036199 Upstream 46bp 27417 chr1 155247568 155247568 1 + C T BLCA 155247569 + 155247549 155247589 41 GGTCAACAAGTTCTCCCTTCGGGTGTTCGGCAGCCACAAAG GGTCAACAAGTTCTCCCTTTGGGTGTTCGGCAGCCACAAAG < 41bp 0.51152368713494 0.720135844949498 NA NA prediction 0.417224315629114 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155247569 chr1:155247568 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_29984 0 0 1 0 1 HCN3 chr1:155247659 5'GT 155247659 Upstream 92bp 27418 chr12 272716 272716 1 + G A rs142617174 272717 + 272697 272737 41 GCCGGCTCTTCGAGGTGACGGATGTGAACAAGCTGCAGAAG GCCGGCTCTTCGAGGTGACAGATGTGAACAAGCTGCAGAAG < 41bp 0.504615784770891 0.713226496358243 NA NA prediction 0.417221423174702 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:272717 chr12:272716 synonymous SNV . 0 20 hm7G_associated_SNPs_29985 0 0 0 0 2 IQSEC3 chr12:272660 3'AG 272660 Downstream 57bp 27419 chr12 272716 272716 1 + G A rs142617174 272717 + 272697 272737 41 GCCGGCTCTTCGAGGTGACGGATGTGAACAAGCTGCAGAAG GCCGGCTCTTCGAGGTGACAGATGTGAACAAGCTGCAGAAG < 41bp 0.504615784770891 0.713226496358243 NA NA prediction 0.417221423174702 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:272717 chr12:272716 synonymous SNV . 0 20 hm7G_associated_SNPs_29985 0 0 0 0 2 IQSEC3 chr12:272785 5'GT 272785 Upstream 70bp 27420 chr1 171303826 171303826 1 + C T STAD 171303827 + 171303807 171303847 41 GAGCGACATTAGCCATCATCGGCCTTATCGGCCTTAAAGGA GAGCGACATTAGCCATCATTGGCCTTATCGGCCTTAAAGGA < 41bp 0.505444000207423 0.714052198614265 NA NA prediction 0.417216396813684 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171303827 chr1:171303826 synonymous SNV . 0 20 hm7G_associated_SNPs_29986 0 0 0 0 1 FMO4 chr1:171303902 5'GT 171303902 Upstream 77bp 27421 chr1 43255567 43255567 1 + G A rs61743366 43255568 + 43255548 43255588 41 CCTTATCTCTGGCCAACATGGTGCTGGGGCTCTTCTCCATC CCTTATCTCTGGCCAACATAGTGCTGGGGCTCTTCTCCATC < 41bp 0.497209425351536 0.708606793897474 NA NA prediction 0.417213587794947 Functional Gain - TMEM269 ENSG00000164008 CDS Human protein_coding chr1:43255568 chr1:43255567 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29988 0 0 0 0 2 TMEM269 chr1:43255492 3'AG 43255492 Downstream 76bp 27422 chr1 43255567 43255567 1 + G A rs61743366 43255568 + 43255548 43255588 41 CCTTATCTCTGGCCAACATGGTGCTGGGGCTCTTCTCCATC CCTTATCTCTGGCCAACATAGTGCTGGGGCTCTTCTCCATC < 41bp 0.497209425351536 0.708606793897474 NA NA prediction 0.417213587794947 Functional Gain - TMEM269 ENSG00000164008 CDS Human protein_coding chr1:43255568 chr1:43255567 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_29988 0 0 0 0 2 TMEM269 chr1:43255605 5'GT 43255605 Upstream 39bp 27423 chr14 42373362 42373362 1 + G T LUAD 42373363 + 42373343 42373383 41 CTTTTTCTTTCATTTCAGAGGCTGGAGTTAATCTGAAGAGC CTTTTTCTTTCATTTCAGATGCTGGAGTTAATCTGAAGAGC < 41bp 0.412360143925324 0.708605920972592 NA NA prediction 0.417211841945184 Functional Gain - LRFN5 ENSG00000165379 CDS Human protein_coding chr14:42373363 chr14:42373362 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_29989 0 0 0 0 1 LRFN5 chr14:42373361 3'AG 42373361 Downstream 2bp 27424 chr5 32774840 32774840 1 + C T rs147308580 32774841 + 32774821 32774861 41 TGTTTGTTGAAGGATTCCACGATGCCATCCTCCTCTACGTC TGTTTGTTGAAGGATTCCATGATGCCATCCTCCTCTACGTC < 41bp 0.525583797072516 0.734188731455679 NA NA prediction 0.417209868766327 Functional Gain - NPR3 ENSG00000113389 CDS Human protein_coding chr5:32774841 chr5:32774840 synonymous SNV . 0 20 hm7G_associated_SNPs_29990 0 0 0 0 1 NPR3 chr5:32774814 3'AG 32774814 Downstream 27bp 27425 chr3 56647651 56647651 1 + G T UCEC 56647652 + 56647632 56647672 41 CAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGA CAGGTAGAAGAGAAGCGCATGAAGAAACAACTGGAGGAAGA < 41bp 0.685402367587894 0.894007118073428 NA NA prediction 0.417209500971068 Functional Gain - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56647652 chr3:56647651 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_29991 0 0 1 2 2 CCDC66 chr3:56647617 3'AG 56647617 Downstream 35bp 27426 chr3 56647651 56647651 1 + G T UCEC 56647652 + 56647632 56647672 41 CAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGA CAGGTAGAAGAGAAGCGCATGAAGAAACAACTGGAGGAAGA < 41bp 0.685402367587894 0.894007118073428 NA NA prediction 0.417209500971068 Functional Gain - CCDC66 ENSG00000180376 CDS Human protein_coding chr3:56647652 chr3:56647651 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_29991 0 0 1 2 2 CCDC66 chr3:56647639 3'AG 56647639 Downstream 13bp 27427 chr6 52344564 52344564 1 + C T UCEC 52344565 + 52344545 52344585 41 CATGTCCGAAAGCGAGAAGCGCCTGCTCCAGAAGCAGAAAG CATGTCCGAAAGCGAGAAGTGCCTGCTCCAGAAGCAGAAAG < 41bp 0.52034025786478 0.728943980955968 NA NA prediction 0.417207446182376 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52344565 chr6:52344564 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_29992 0 0 1 0 1 EFHC1 chr6:52344585 5'GT 52344585 Upstream 22bp 27428 chr20 43034817 43034817 1 + G A COAD 43034818 + 43034798 43034838 41 CGGTGCCTCGAGCTGTGACGGCTGCAAGGGCTTCTTCCGGA CGGTGCCTCGAGCTGTGACAGCTGCAAGGGCTTCTTCCGGA < 41bp 0.53950945951856 0.748111505593393 NA NA prediction 0.417204092149668 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034818 chr20:43034817 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_29993 0 0 1 0 1 HNF4A chr20:43034872 5'GT 43034872 Upstream 56bp 27429 chr7 142962125 142962125 1 + G T LUSC 142962126 + 142962106 142962146 41 TCCTCACCGCCGTGAACTTGGAGCATCCAGAGATGCTGGAG TCCTCACCGCCGTGAACTTTGAGCATCCAGAGATGCTGGAG < 41bp 0.70718058708285 0.915781913849596 NA NA prediction 0.417202653533493 Functional Gain - GSTK1 ENSG00000197448 CDS Human protein_coding chr7:142962126 chr7:142962125 nonsynonymous SNV 0.701 0 20 hm7G_associated_SNPs_29995 0 0 1 0 1 GSTK1 chr7:142962085 3'AG 142962085 Downstream 41bp 27430 chr8 21842187 21842187 1 + G A BRCA 21842188 + 21842168 21842208 41 AAGATCCCCTGGAGGATACGGGGCTGGTCCAGCAGCAGTTG AAGATCCCCTGGAGGATACAGGGCTGGTCCAGCAGCAGTTG < 41bp 0.510510255042043 0.719110728081983 NA NA prediction 0.41720094607988 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21842188 chr8:21842187 synonymous SNV . 0 20 hm7G_associated_SNPs_29996 0 0 1 0 1 XPO7 chr8:21842157 3'AG 21842157 Downstream 31bp 27431 chr20 25261606 25261606 1 + G A rs141916716 25261607 + 25261587 25261627 41 CGTGGCCGCGCTGTTTCCCGGCGATGTGGACCGCCTGCGCA CGTGGCCGCGCTGTTTCCCAGCGATGTGGACCGCCTGCGCA < 41bp 0.570304958801044 0.778905044506792 NA NA prediction 0.417200171411496 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25261607 chr20:25261606 nonsynonymous SNV 0.491 2 20 hm7G_associated_SNPs_29997 0 0 1 0 1 PYGB chr20:25261585 3'AG 25261585 Downstream 22bp 27432 chr1 28595721 28595721 1 + G A LIHC 28595722 + 28595702 28595742 41 GGAGAGCCGGGCTCGGCGAGGCCCTCGAGGGCCCAGCGCCT GGAGAGCCGGGCTCGGCGAAGCCCTCGAGGGCCCAGCGCCT < 41bp 0.583577889418476 0.792175547636947 NA NA prediction 0.417195316436943 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28595722 chr1:28595721 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_29999 0 0 1 0 2 SESN2 chr1:28595694 3'AG 28595694 Downstream 28bp 27433 chr1 28595721 28595721 1 + G A LIHC 28595722 + 28595702 28595742 41 GGAGAGCCGGGCTCGGCGAGGCCCTCGAGGGCCCAGCGCCT GGAGAGCCGGGCTCGGCGAAGCCCTCGAGGGCCCAGCGCCT < 41bp 0.583577889418476 0.792175547636947 NA NA prediction 0.417195316436943 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28595722 chr1:28595721 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_29999 0 0 1 0 2 SESN2 chr1:28595759 5'GT 28595759 Upstream 39bp 27434 chr16 30995001 30995001 1 + G A COAD 30995002 + 30994982 30995022 41 CTACGTGCAGGAGGGCATTGGCAGCAGCTACCTGTTCCGGG CTACGTGCAGGAGGGCATTAGCAGCAGCTACCTGTTCCGGG < 41bp 0.4934885298462 0.708597421967157 NA NA prediction 0.417194843934315 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30995002 chr16:30995001 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_30000 0 0 1 0 2 SETD1A chr16:30994956 3'AG 30994956 Downstream 46bp 27435 chr16 30995001 30995001 1 + G A COAD 30995002 + 30994982 30995022 41 CTACGTGCAGGAGGGCATTGGCAGCAGCTACCTGTTCCGGG CTACGTGCAGGAGGGCATTAGCAGCAGCTACCTGTTCCGGG < 41bp 0.4934885298462 0.708597421967157 NA NA prediction 0.417194843934315 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30995002 chr16:30995001 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_30000 0 0 1 0 2 SETD1A chr16:30995093 5'GT 30995093 Upstream 93bp 27436 chr11 67200475 67200475 1 + C T COAD 67200476 + 67200456 67200496 41 AGGAGTCTATCCATGAGGGCGCCGTCACTCACACCTTCTGC AGGAGTCTATCCATGAGGGTGCCGTCACTCACACCTTCTGC < 41bp 0.512639653291704 0.721236683588954 NA NA prediction 0.4171940605945 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67200476 chr11:67200475 synonymous SNV . 0 20 hm7G_associated_SNPs_30001 0 0 1 0 1 RPS6KB2 chr11:67200513 5'GT 67200513 Upstream 39bp 27437 chr17 61767679 61767679 1 + C T HNSC 61767680 + 61767660 61767700 41 TCCTGGGCCAGGGTGCCTTCGGCAGGGTCTATTTGTGCTAT TCCTGGGCCAGGGTGCCTTTGGCAGGGTCTATTTGTGCTAT < 41bp 0.506224638098698 0.714820487906483 NA NA prediction 0.417191699615571 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61767680 chr17:61767679 synonymous SNV . 0 20 hm7G_associated_SNPs_30002 0 0 1 0 2 MAP3K3 chr17:61767624 3'AG 61767624 Downstream 56bp 27438 chr17 61767679 61767679 1 + C T HNSC 61767680 + 61767660 61767700 41 TCCTGGGCCAGGGTGCCTTCGGCAGGGTCTATTTGTGCTAT TCCTGGGCCAGGGTGCCTTTGGCAGGGTCTATTTGTGCTAT < 41bp 0.506224638098698 0.714820487906483 NA NA prediction 0.417191699615571 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61767680 chr17:61767679 synonymous SNV . 0 20 hm7G_associated_SNPs_30002 0 0 1 0 2 MAP3K3 chr17:61767772 5'GT 61767772 Upstream 94bp 27439 chr12 54394488 54394488 1 + G T GBM 54394489 + 54394469 54394509 41 CCGGCAGCAAGCACAAAGAGGAGAAGGCCGACCTGGACCCC CCGGCAGCAAGCACAAAGATGAGAAGGCCGACCTGGACCCC < 41bp 0.695039350729876 0.903634333366341 NA NA prediction 0.41718996527293 Functional Gain - HOXC9 ENSG00000180806 CDS Human protein_coding chr12:54394489 chr12:54394488 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30003 0 0 0 0 1 HOXC9 chr12:54394510 5'GT 54394510 Upstream 23bp 27440 chr19 15222463 15222463 1 + C T COAD 15222464 + 15222444 15222484 41 CATCCTCAAGGATTATCTTCGAGAGTTGCCCACCCCACTCA CATCCTCAAGGATTATCTTTGAGAGTTGCCCACCCCACTCA < 41bp 0.508375653204974 0.71696894091022 NA NA prediction 0.417186575410492 Functional Gain - SYDE1 ENSG00000105137 CDS Human protein_coding chr19:15222464 chr19:15222463 stopgain 0.449 1 20 hm7G_associated_SNPs_30006 0 0 0 0 1 SYDE1 chr19:15222443 3'AG 15222443 Downstream 21bp 27441 chr22 23653915 23653915 1 + C T STAD 23653916 + 23653896 23653936 41 CAAGGTGCCCTACATCGTGCGCCAGTGCGTGGAGGAGATCG CAAGGTGCCCTACATCGTGTGCCAGTGCGTGGAGGAGATCG < 41bp 0.500952966109206 0.709544850754269 NA NA prediction 0.417183769290126 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23653916 chr22:23653915 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_30007 0 0 0 0 1 BCR chr22:23653884 3'AG 23653884 Downstream 32bp 27442 chr5 145836793 145836793 1 + G A LUAD 145836794 + 145836774 145836814 41 GTTCCATGCCTCCTCCTCCGGGTATGATGTTTCCACCAGGA GTTCCATGCCTCCTCCTCCAGGTATGATGTTTCCACCAGGA < 41bp 0.502730688855494 0.711321380216779 NA NA prediction 0.417181382722569 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145836794 chr5:145836793 synonymous SNV . 0 20 hm7G_associated_SNPs_30008 0 0 1 0 1 TCERG1 chr5:145836746 3'AG 145836746 Downstream 48bp 27443 chr12 113806985 113806985 1 + G A COAD 113806986 + 113806966 113807006 41 CTTGCAGGCCTATGCAGCCGGTGTGGTGGAGGCTGCTGTGT CTTGCAGGCCTATGCAGCCAGTGTGGTGGAGGCTGCTGTGT < 41bp 0.547969346408619 0.756559127273042 NA NA prediction 0.417179561728846 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113806986 chr12:113806985 nonsynonymous SNV 0.580 4 20 hm7G_associated_SNPs_30009 0 0 1 0 2 PLBD2 chr12:113806921 3'AG 113806921 Downstream 65bp 27444 chr12 113806985 113806985 1 + G A COAD 113806986 + 113806966 113807006 41 CTTGCAGGCCTATGCAGCCGGTGTGGTGGAGGCTGCTGTGT CTTGCAGGCCTATGCAGCCAGTGTGGTGGAGGCTGCTGTGT < 41bp 0.547969346408619 0.756559127273042 NA NA prediction 0.417179561728846 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113806986 chr12:113806985 nonsynonymous SNV 0.580 4 20 hm7G_associated_SNPs_30009 0 0 1 0 2 PLBD2 chr12:113807014 5'GT 113807014 Upstream 30bp 27445 chr12 58005763 58005763 1 + G T LUSC 58005764 + 58005744 58005784 41 TGCGGCTGCTGCTTCGCCCGGGGGGGACGTGGTGAGTGCCA TGCGGCTGCTGCTTCGCCCTGGGGGGACGTGGTGAGTGCCA < 41bp 0.646560745578355 0.855149594950329 NA NA prediction 0.41717769874395 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58005764 chr12:58005763 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_30010 0 0 1 0 1 ARHGEF25 chr12:58005774 5'GT 58005774 Upstream 12bp 27446 chr17 2268589 2268589 1 + C T UCEC 2268590 + 2268570 2268610 41 TGGGCACGGGGCGGGCCACCGACTATGTGTTCCGGATCATC TGGGCACGGGGCGGGCCACTGACTATGTGTTCCGGATCATC < 41bp 0.506676923002896 0.715263810603639 NA NA prediction 0.417173775201485 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2268590 chr17:2268589 synonymous SNV . 0 20 hm7G_associated_SNPs_30011 0 0 1 0 2 SGSM2 chr17:2268509 3'AG 2268509 Downstream 81bp 27447 chr17 2268589 2268589 1 + C T UCEC 2268590 + 2268570 2268610 41 TGGGCACGGGGCGGGCCACCGACTATGTGTTCCGGATCATC TGGGCACGGGGCGGGCCACTGACTATGTGTTCCGGATCATC < 41bp 0.506676923002896 0.715263810603639 NA NA prediction 0.417173775201485 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2268590 chr17:2268589 synonymous SNV . 0 20 hm7G_associated_SNPs_30011 0 0 1 0 2 SGSM2 chr17:2268635 5'GT 2268635 Upstream 47bp 27448 chr11 117265196 117265196 1 + G A UCEC 117265197 + 117265177 117265217 41 CTTGAGGACTTGCGGCGCCGGCACAGGGAGCAGGTGAGGGG CTTGAGGACTTGCGGCGCCAGCACAGGGAGCAGGTGAGGGG < 41bp 0.498960130957895 0.708581120111837 NA NA prediction 0.417162240223675 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117265197 chr11:117265196 nonsynonymous SNV 0.964 4 20 hm7G_associated_SNPs_30012 0 0 1 0 1 CEP164 chr11:117265209 5'GT 117265209 Upstream 14bp 27449 chr19 48908563 48908563 1 + C T UCEC 48908564 + 48908544 48908584 41 TCCTTCCTGAGCTCGGCCACGACTGTCGCGCCCAGAACCGC TCCTTCCTGAGCTCGGCCATGACTGTCGCGCCCAGAACCGC < 41bp 0.499360086758867 0.70858088397546 NA NA prediction 0.417161767950921 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48908564 chr19:48908563 synonymous SNV . 0 20 hm7G_associated_SNPs_30013 0 0 0 0 1 GRIN2D chr19:48908610 5'GT 48908610 Upstream 48bp 27450 chr10 104161261 104161261 1 + C T STAD 104161262 + 104161242 104161282 41 ATGGAGCCACCCCTGACCCCGCCCAGCCCAGCAGGTGAGAA ATGGAGCCACCCCTGACCCTGCCCAGCCCAGCAGGTGAGAA < 41bp 0.51431959562069 0.722900023162383 NA NA prediction 0.417160855083386 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104161262 chr10:104161261 nonsynonymous SNV 0.359 2 20 hm7G_associated_SNPs_30014 0 0 1 0 2 NFKB2 chr10:104161206 3'AG 104161206 Downstream 56bp 27451 chr10 104161261 104161261 1 + C T STAD 104161262 + 104161242 104161282 41 ATGGAGCCACCCCTGACCCCGCCCAGCCCAGCAGGTGAGAA ATGGAGCCACCCCTGACCCTGCCCAGCCCAGCAGGTGAGAA < 41bp 0.51431959562069 0.722900023162383 NA NA prediction 0.417160855083386 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104161262 chr10:104161261 nonsynonymous SNV 0.359 2 20 hm7G_associated_SNPs_30014 0 0 1 0 2 NFKB2 chr10:104161275 5'GT 104161275 Upstream 15bp 27452 chr12 106760300 106760300 1 + G T LUAD 106760301 + 106760281 106760321 41 TCTATCTGTTTAGGTGAAAGGCCTTGTGAAACAGCATATAG TCTATCTGTTTAGGTGAAATGCCTTGTGAAACAGCATATAG < 41bp 0.37979748845574 0.708580276087257 NA NA prediction 0.417160552174515 Functional Gain - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106760301 chr12:106760300 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30015 0 0 0 0 2 POLR3B chr12:106760294 3'AG 106760294 Downstream 7bp 27453 chr12 106760300 106760300 1 + G T LUAD 106760301 + 106760281 106760321 41 TCTATCTGTTTAGGTGAAAGGCCTTGTGAAACAGCATATAG TCTATCTGTTTAGGTGAAATGCCTTGTGAAACAGCATATAG < 41bp 0.37979748845574 0.708580276087257 NA NA prediction 0.417160552174515 Functional Gain - POLR3B ENSG00000013503 CDS Human protein_coding chr12:106760301 chr12:106760300 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30015 0 0 0 0 2 POLR3B chr12:106760350 5'GT 106760350 Upstream 51bp 27454 chr7 128441481 128441481 1 + C T UCEC 128441482 + 128441462 128441502 41 GAGATTATGAGATGGAGATCGCCTCCCTCCGTGCAGAAATG GAGATTATGAGATGGAGATTGCCTCCCTCCGTGCAGAAATG < 41bp 0.53092087659868 0.739498174258168 NA NA prediction 0.417154595318976 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128441482 chr7:128441481 synonymous SNV . 0 20 hm7G_associated_SNPs_30016 0 0 1 0 2 CCDC136 chr7:128441527 5'GT 128441527 Upstream 47bp 27455 chr7 128441481 128441481 1 + C T UCEC 128441482 + 128441462 128441502 41 GAGATTATGAGATGGAGATCGCCTCCCTCCGTGCAGAAATG GAGATTATGAGATGGAGATTGCCTCCCTCCGTGCAGAAATG < 41bp 0.53092087659868 0.739498174258168 NA NA prediction 0.417154595318976 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128441482 chr7:128441481 synonymous SNV . 0 20 hm7G_associated_SNPs_30016 0 0 1 0 2 CCDC136 chr7:128441563 5'GT 128441563 Upstream 83bp 27456 chr22 38355370 38355370 1 + C T SKCM 38355371 + 38355351 38355391 41 AGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAG AGGAAGGCCAGGAGAATGTTGAGATCCTCCCCTCTGGGGAG < 41bp 0.497009202774679 0.708571137161817 NA NA prediction 0.417142274323634 Functional Gain - POLR2F ENSG00000100142 CDS Human protein_coding chr22:38355371 chr22:38355370 nonsynonymous SNV 0.949 0 20 hm7G_associated_SNPs_30021 0 0 1 0 1 POLR2F chr22:38355353 3'AG 38355353 Downstream 18bp 27457 chr11 380152 380152 1 + G A SKCM 380153 + 380133 380173 41 CCAGTACCTGAGACGAACCGGGAACTTCGAGCGCTCCGCCG CCAGTACCTGAGACGAACCAGGAACTTCGAGCGCTCCGCCG < 41bp 0.560927636484111 0.769494120520379 NA NA prediction 0.417132968072536 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:380153 chr11:380152 nonsynonymous SNV 0.583 3 20 hm7G_associated_SNPs_30025 0 0 0 0 2 B4GALNT4 chr11:380130 3'AG 380130 Downstream 23bp 27458 chr11 380152 380152 1 + G A SKCM 380153 + 380133 380173 41 CCAGTACCTGAGACGAACCGGGAACTTCGAGCGCTCCGCCG CCAGTACCTGAGACGAACCAGGAACTTCGAGCGCTCCGCCG < 41bp 0.560927636484111 0.769494120520379 NA NA prediction 0.417132968072536 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:380153 chr11:380152 nonsynonymous SNV 0.583 3 20 hm7G_associated_SNPs_30025 0 0 0 0 2 B4GALNT4 chr11:380202 5'GT 380202 Upstream 51bp 27459 chr15 75641615 75641615 1 + G A SKCM 75641616 + 75641596 75641636 41 TCCGCCGGTTCGGCCGCTGGGACCTTGGGGGAAAGTGGCAG TCCGCCGGTTCGGCCGCTGAGACCTTGGGGGAAAGTGGCAG < 41bp 0.556525097894338 0.765090775935134 NA NA prediction 0.417131356081593 Functional Gain - NEIL1 ENSG00000140398 CDS Human protein_coding chr15:75641616 chr15:75641615 stopgain 0.157 1 20 hm7G_associated_SNPs_30026 0 0 0 0 1 NEIL1 chr15:75641680 5'GT 75641680 Upstream 66bp 27460 chr10 133953984 133953984 1 + C T UCEC 133953985 + 133953965 133954005 41 TGGAGACCTTCTTTGGATACGACGAAGAGGCTTCCCTGGAA TGGAGACCTTCTTTGGATATGACGAAGAGGCTTCCCTGGAA < 41bp 0.510972575846963 0.719534004206385 NA NA prediction 0.417122856718844 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133953985 chr10:133953984 synonymous SNV . 0 20 hm7G_associated_SNPs_30027 0 0 0 0 2 JAKMIP3 chr10:133953955 3'AG 133953955 Downstream 30bp 27461 chr10 133953984 133953984 1 + C T UCEC 133953985 + 133953965 133954005 41 TGGAGACCTTCTTTGGATACGACGAAGAGGCTTCCCTGGAA TGGAGACCTTCTTTGGATATGACGAAGAGGCTTCCCTGGAA < 41bp 0.510972575846963 0.719534004206385 NA NA prediction 0.417122856718844 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133953985 chr10:133953984 synonymous SNV . 0 20 hm7G_associated_SNPs_30027 0 0 0 0 2 JAKMIP3 chr10:133954083 5'GT 133954083 Upstream 100bp 27462 chr2 26647184 26647184 1 + C T GBM 26647185 + 26647165 26647205 41 AGACCAGCCAGGACAAATTCGATGAAATCACCTCAAAGTGG AGACCAGCCAGGACAAATTTGATGAAATCACCTCAAAGTGG < 41bp 0.511639404382889 0.720198187889909 NA NA prediction 0.417117567014039 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26647185 chr2:26647184 synonymous SNV . 0 20 hm7G_associated_SNPs_30028 1 0 0 0 1 DRC1 chr2:26647139 3'AG 26647139 Downstream 46bp 27463 chr11 61111643 61111643 1 + C T DLBC 61111644 + 61111624 61111664 41 GATGGCGCTGGTGCTGGAACGGGTGTGCAGCACTCTCCTGG GATGGCGCTGGTGCTGGAATGGGTGTGCAGCACTCTCCTGG < 41bp 0.519256772656386 0.727815326127159 NA NA prediction 0.417117106941547 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61111644 chr11:61111643 nonsynonymous SNV 0.772 1 20 hm7G_associated_SNPs_30029 0 0 1 0 1 TKFC chr11:61111608 3'AG 61111608 Downstream 36bp 27464 chr6 43413410 43413410 1 + C T OV 43413411 + 43413391 43413431 41 TCCTCTGATGTGGCCTGTGCGGATGACAGCCTGCCCTTCAT TCCTCTGATGTGGCCTGTGTGGATGACAGCCTGCCCTTCAT < 41bp 0.525718379894507 0.734276885490736 NA NA prediction 0.417117011192457 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43413411 chr6:43413410 nonsynonymous SNV 0.779 1 20 hm7G_associated_SNPs_30030 0 0 0 0 1 ABCC10 chr6:43413337 3'AG 43413337 Downstream 74bp 27465 chr3 142496597 142496597 1 + G T LUSC 142496598 + 142496578 142496618 41 AACTAAGTCTTGTGGAGGTGGAATTCAGGTGGGAATGAATG AACTAAGTCTTGTGGAGGTTGAATTCAGGTGGGAATGAATG < 41bp 0.681373722199228 0.889930382609006 NA NA prediction 0.417113320819558 Functional Gain - TRPC1 ENSG00000144935 CDS Human protein_coding chr3:142496598 chr3:142496597 synonymous SNV . 0 20 hm7G_associated_SNPs_30031 0 0 0 0 1 TRPC1 chr3:142496605 5'GT 142496605 Upstream 9bp 27466 chr11 45946421 45946421 1 + G T UCEC 45946422 + 45946402 45946442 41 ACAGGCCCTGGCCTGCCTTGGGCCGGGGATTTAACACAGGT ACAGGCCCTGGCCTGCCTTTGGCCGGGGATTTAACACAGGT < 41bp 0.351204112662633 0.708553420886759 NA NA prediction 0.417106841773517 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45946422 chr11:45946421 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30032 0 0 0 0 2 LARGE2 chr11:45946336 3'AG 45946336 Downstream 86bp 27467 chr11 45946421 45946421 1 + G T UCEC 45946422 + 45946402 45946442 41 ACAGGCCCTGGCCTGCCTTGGGCCGGGGATTTAACACAGGT ACAGGCCCTGGCCTGCCTTTGGCCGGGGATTTAACACAGGT < 41bp 0.351204112662633 0.708553420886759 NA NA prediction 0.417106841773517 Functional Gain - LARGE2 ENSG00000165905 CDS Human protein_coding chr11:45946422 chr11:45946421 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30032 0 0 0 0 2 LARGE2 chr11:45946440 5'GT 45946440 Upstream 20bp 27468 chr2 220492717 220492717 1 + G A SKCM 220492718 + 220492698 220492738 41 CAGCCGCCTACCTGGCCATGGCCAACGGAGTGATCCCGCCG CAGCCGCCTACCTGGCCATAGCCAACGGAGTGATCCCGCCG < 41bp 0.471771392034986 0.708552207297826 NA NA prediction 0.417104414595652 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220492718 chr2:220492717 nonsynonymous SNV 0.906 1 20 hm7G_associated_SNPs_30033 0 0 0 0 3 SLC4A3 chr2:220492622 3'AG 220492622 Downstream 96bp 27469 chr2 220492717 220492717 1 + G A SKCM 220492718 + 220492698 220492738 41 CAGCCGCCTACCTGGCCATGGCCAACGGAGTGATCCCGCCG CAGCCGCCTACCTGGCCATAGCCAACGGAGTGATCCCGCCG < 41bp 0.471771392034986 0.708552207297826 NA NA prediction 0.417104414595652 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220492718 chr2:220492717 nonsynonymous SNV 0.906 1 20 hm7G_associated_SNPs_30033 0 0 0 0 3 SLC4A3 chr2:220492682 3'AG 220492682 Downstream 36bp 27470 chr2 220492717 220492717 1 + G A SKCM 220492718 + 220492698 220492738 41 CAGCCGCCTACCTGGCCATGGCCAACGGAGTGATCCCGCCG CAGCCGCCTACCTGGCCATAGCCAACGGAGTGATCCCGCCG < 41bp 0.471771392034986 0.708552207297826 NA NA prediction 0.417104414595652 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220492718 chr2:220492717 nonsynonymous SNV 0.906 1 20 hm7G_associated_SNPs_30033 0 0 0 0 3 SLC4A3 chr2:220492765 5'GT 220492765 Upstream 49bp 27471 chr9 123914854 123914854 1 + C T HNSC 123914855 + 123914835 123914875 41 AGAGCATCCAAGCGGCAGTCGGAGAAAGAAATGGAAGAACT AGAGCATCCAAGCGGCAGTTGGAGAAAGAAATGGAAGAACT < 41bp 0.516862740644041 0.725413124507767 NA NA prediction 0.417100767727453 Functional Gain - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123914855 chr9:123914854 nonsynonymous SNV 0.636 0 20 hm7G_associated_SNPs_30034 0 0 1 0 1 CNTRL chr9:123914763 3'AG 123914763 Downstream 92bp 27472 chr16 14020449 14020449 1 + C T GBM 14020450 + 14020430 14020470 41 ATAGAGCCCACAGAATAATCGAGTCTTGTCAAGAAGCATTC ATAGAGCCCACAGAATAATTGAGTCTTGTCAAGAAGCATTC < 41bp 0.505134729131477 0.713683783167489 NA NA prediction 0.417098108072024 Functional Gain - ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14020450 chr16:14020449 synonymous SNV . 0 20 hm7G_associated_SNPs_30035 0 0 0 0 1 ERCC4 chr16:14020418 3'AG 14020418 Downstream 32bp 27473 chr2 220397182 220397182 1 + G A BLCA 220397183 + 220397163 220397203 41 CTTCAGCGCTGCCACTGCCGGATGGTGCACATGCCAGGTGG CTTCAGCGCTGCCACTGCCAGATGGTGCACATGCCAGGTGG < 41bp 0.534527053543884 0.743075717454142 NA NA prediction 0.417097327820517 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220397183 chr2:220397182 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30036 0 0 0 0 1 ASIC4 chr2:220397199 5'GT 220397199 Upstream 18bp 27474 chr18 74563737 74563737 1 + C T COAD 74563738 + 74563718 74563758 41 TCTCTCCAAATAGCCACATCGATGTGACCAGTGCCCCCAAA TCTCTCCAAATAGCCACATTGATGTGACCAGTGCCCCCAAA < 41bp 0.511316811580973 0.719865181457047 NA NA prediction 0.417096739752147 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74563738 chr18:74563737 stopgain 0.998 1 20 hm7G_associated_SNPs_30037 0 0 1 0 1 ZNF236 chr18:74563731 3'AG 74563731 Downstream 7bp 27475 chr8 2063802 2063802 1 + G T UCEC 2063803 + 2063783 2063823 41 GCATTATTGAGATGGTGATGGATCGATTTAGTATTGAAAAT GCATTATTGAGATGGTGATTGATCGATTTAGTATTGAAAAT < 41bp 0.369847272774877 0.708543005716658 NA NA prediction 0.417086011433316 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2063803 chr8:2063802 nonsynonymous SNV 0.889 1 20 hm7G_associated_SNPs_30039 0 0 0 0 2 MYOM2 chr8:2063752 3'AG 2063752 Downstream 51bp 27476 chr8 2063802 2063802 1 + G T UCEC 2063803 + 2063783 2063823 41 GCATTATTGAGATGGTGATGGATCGATTTAGTATTGAAAAT GCATTATTGAGATGGTGATTGATCGATTTAGTATTGAAAAT < 41bp 0.369847272774877 0.708543005716658 NA NA prediction 0.417086011433316 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2063803 chr8:2063802 nonsynonymous SNV 0.889 1 20 hm7G_associated_SNPs_30039 0 0 0 0 2 MYOM2 chr8:2063896 5'GT 2063896 Upstream 95bp 27477 chr8 43013804 43013804 1 + C T STAD 43013805 + 43013785 43013825 41 CCTCTGTCAGCACCCAGCACGGATCTATCCTGCAGCTGAAC CCTCTGTCAGCACCCAGCATGGATCTATCCTGCAGCTGAAC < 41bp 0.515740532554156 0.724282561436647 NA NA prediction 0.417084057764982 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43013805 chr8:43013804 synonymous SNV . 0 20 hm7G_associated_SNPs_30041 0 0 0 0 2 HGSNAT chr8:43013718 3'AG 43013718 Downstream 87bp 27478 chr8 43013804 43013804 1 + C T STAD 43013805 + 43013785 43013825 41 CCTCTGTCAGCACCCAGCACGGATCTATCCTGCAGCTGAAC CCTCTGTCAGCACCCAGCATGGATCTATCCTGCAGCTGAAC < 41bp 0.515740532554156 0.724282561436647 NA NA prediction 0.417084057764982 Functional Gain - HGSNAT ENSG00000165102 CDS Human protein_coding chr8:43013805 chr8:43013804 synonymous SNV . 0 20 hm7G_associated_SNPs_30041 0 0 0 0 2 HGSNAT chr8:43013854 5'GT 43013854 Upstream 51bp 27479 chr12 64174840 64174840 1 + G T UCEC 64174841 + 64174821 64174861 41 AGAATGGAATCCTTGGGAAGGAGATGAAAAAAATGAGCAAC AGAATGGAATCCTTGGGAATGAGATGAAAAAAATGAGCAAC < 41bp 0.674491497382149 0.883030884334693 NA NA prediction 0.417078773905089 Functional Gain - TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64174841 chr12:64174840 stopgain 1.000 0 20 hm7G_associated_SNPs_30043 0 0 1 0 1 TMEM5 chr12:64174799 3'AG 64174799 Downstream 42bp 27480 chr6 15468782 15468782 1 + C T UCEC 15468783 + 15468763 15468803 41 ATTCCACCAGGTTCTCCTGCGCTGCCCAACAGCATGGTGTA ATTCCACCAGGTTCTCCTGTGCTGCCCAACAGCATGGTGTA < 41bp 0.506494459908234 0.715033249740339 NA NA prediction 0.417077579664209 Functional Gain - JARID2 ENSG00000008083 CDS Human protein_coding chr6:15468783 chr6:15468782 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30044 0 0 1 0 1 JARID2 chr6:15468773 3'AG 15468773 Downstream 10bp 27481 chr22 37693679 37693679 1 + C T STAD 37693680 + 37693660 37693700 41 CACGGTTCCTGTATAAAGGCGAGGGCCTCAACAAGACAGCC CACGGTTCCTGTATAAAGGTGAGGGCCTCAACAAGACAGCC < 41bp 0.525640351361475 0.73417422369563 NA NA prediction 0.41706774466831 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37693680 chr22:37693679 synonymous SNV . 0 20 hm7G_associated_SNPs_30045 0 0 0 0 1 CYTH4 chr22:37693723 5'GT 37693723 Upstream 45bp 27482 chr1 17292924 17292924 1 + G A rs114546248 17292925 + 17292905 17292945 41 CGGCGCAGTGTGGATGGGCGGCTGAGCGGGGTCCAGGCGGA CGGCGCAGTGTGGATGGGCAGCTGAGCGGGGTCCAGGCGGA < 41bp 0.520961560750552 0.729494674142849 NA NA prediction 0.417066226784593 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17292925 chr1:17292924 nonsynonymous SNV 0.268 3 20 hm7G_associated_SNPs_30046 0 0 1 0 1 CROCC chr1:17292903 3'AG 17292903 Downstream 22bp 27483 chr15 91352389 91352389 1 + G T UCEC 91352390 + 91352370 91352410 41 CTTTATCTTCTGATCCTGAGGTTTTGCTTCAAATTGATGGT CTTTATCTTCTGATCCTGATGTTTTGCTTCAAATTGATGGT < 41bp 0.38636680508102 0.70853234385387 NA NA prediction 0.417064687707741 Functional Gain - BLM ENSG00000197299 CDS Human protein_coding chr15:91352390 chr15:91352389 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30047 0 0 1 0 1 BLM chr15:91352367 3'AG 91352367 Downstream 23bp 27484 chr11 123464857 123464857 1 + C T rs531490633 123464858 + 123464838 123464878 41 TTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTGGTGA TTTAAGCAGCTTCCAGACATGGAGCGCCTCATTGTTGGTGA < 41bp 0.535081871516816 0.7436137036533 NA NA prediction 0.417063664272967 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123464858 chr11:123464857 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30048 0 0 0 0 2 GRAMD1B chr11:123464790 3'AG 123464790 Downstream 68bp 27485 chr11 123464857 123464857 1 + C T rs531490633 123464858 + 123464838 123464878 41 TTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTGGTGA TTTAAGCAGCTTCCAGACATGGAGCGCCTCATTGTTGGTGA < 41bp 0.535081871516816 0.7436137036533 NA NA prediction 0.417063664272967 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123464858 chr11:123464857 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30048 0 0 0 0 2 GRAMD1B chr11:123464874 5'GT 123464874 Upstream 18bp 27486 chr16 29856131 29856131 1 + G A rs3764944 29856132 + 29856112 29856152 41 CCTGTGGATCAGAGGACCCGGGACGCCCTGCAACGCAGCGT CCTGTGGATCAGAGGACCCAGGACGCCCTGCAACGCAGCGT < 41bp 0.482245497453951 0.708531423126242 NA NA prediction 0.417062846252483 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29856132 chr16:29856131 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_30050 0 0 1 0 1 MVP chr16:29856200 5'GT 29856200 Upstream 70bp 27487 chr11 372672 372672 1 + G A COAD 372673 + 372653 372693 41 CTCCTGCAGCCCGAAGGTCGGGACCTAGACATGCTGTTTCC CTCCTGCAGCCCGAAGGTCAGGACCTAGACATGCTGTTTCC < 41bp 0.54382068058246 0.752347865026662 NA NA prediction 0.417054368888404 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372673 chr11:372672 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_30052 0 0 1 0 2 B4GALNT4 chr11:372662 3'AG 372662 Downstream 11bp 27488 chr11 372672 372672 1 + G A COAD 372673 + 372653 372693 41 CTCCTGCAGCCCGAAGGTCGGGACCTAGACATGCTGTTTCC CTCCTGCAGCCCGAAGGTCAGGACCTAGACATGCTGTTTCC < 41bp 0.54382068058246 0.752347865026662 NA NA prediction 0.417054368888404 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372673 chr11:372672 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_30052 0 0 1 0 2 B4GALNT4 chr11:372754 5'GT 372754 Upstream 83bp 27489 chr1 26581751 26581751 1 + G T LUSC 26581752 + 26581732 26581772 41 TGTGATGCCTTCTACTTTAGGGACCTCTCCTGCCAAGCCAA TGTGATGCCTTCTACTTTATGGACCTCTCCTGCCAAGCCAA < 41bp 0.360622029726977 0.708526758054524 NA NA prediction 0.417053516109049 Functional Gain - CEP85 ENSG00000130695 CDS Human protein_coding chr1:26581752 chr1:26581751 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30053 0 0 1 0 1 CEP85 chr1:26581662 3'AG 26581662 Downstream 90bp 27490 chr20 30904422 30904422 1 + G T UCEC 30904423 + 30904403 30904443 41 ACAGCTCATTGCAGCAAGAGGTGGACATCAAGACCAAAAAA ACAGCTCATTGCAGCAAGATGTGGACATCAAGACCAAAAAA < 41bp 0.39256678524819 0.708526671030848 NA NA prediction 0.417053342061696 Functional Gain - KIF3B ENSG00000101350 CDS Human protein_coding chr20:30904423 chr20:30904422 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30054 0 0 1 0 2 KIF3B chr20:30904330 3'AG 30904330 Downstream 93bp 27491 chr20 30904422 30904422 1 + G T UCEC 30904423 + 30904403 30904443 41 ACAGCTCATTGCAGCAAGAGGTGGACATCAAGACCAAAAAA ACAGCTCATTGCAGCAAGATGTGGACATCAAGACCAAAAAA < 41bp 0.39256678524819 0.708526671030848 NA NA prediction 0.417053342061696 Functional Gain - KIF3B ENSG00000101350 CDS Human protein_coding chr20:30904423 chr20:30904422 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30054 0 0 1 0 2 KIF3B chr20:30904452 5'GT 30904452 Upstream 31bp 27492 chrX 149901056 149901056 1 + C T COAD 149901057 + 149901037 149901077 41 AAGTCAAGCAACGATTACCCGTTGCAGCCAGCCACTTGTGG AAGTCAAGCAACGATTACCTGTTGCAGCCAGCCACTTGTGG < 41bp 0.506545663822253 0.715072228298831 NA NA prediction 0.417053128953156 Functional Gain - MTMR1 ENSG00000063601 CDS Human protein_coding chrX:149901057 chrX:149901056 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_30055 0 0 1 0 1 MTMR1 chrX:149901014 3'AG 149901014 Downstream 43bp 27493 chr11 1462076 1462076 1 + G A SKCM 1462077 + 1462057 1462097 41 CGACTACCTGGTGAAGAAGGGGAGGCTGACGCCTAAGGAGG CGACTACCTGGTGAAGAAGAGGAGGCTGACGCCTAAGGAGG < 41bp 0.517483363586124 0.726002722115433 NA NA prediction 0.417038717058619 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1462077 chr11:1462076 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_30058 0 0 0 1 2 BRSK2 chr11:1462018 3'AG 1462018 Downstream 59bp 27494 chr11 1462076 1462076 1 + G A SKCM 1462077 + 1462057 1462097 41 CGACTACCTGGTGAAGAAGGGGAGGCTGACGCCTAAGGAGG CGACTACCTGGTGAAGAAGAGGAGGCTGACGCCTAAGGAGG < 41bp 0.517483363586124 0.726002722115433 NA NA prediction 0.417038717058619 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1462077 chr11:1462076 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_30058 0 0 0 1 2 BRSK2 chr11:1462158 5'GT 1462158 Upstream 83bp 27495 chr10 121551386 121551386 1 + G T STAD 121551387 + 121551367 121551407 41 TTAATTTCTTATAGGTTAAGGAAAGTAAAGAGAAGGAGAAG TTAATTTCTTATAGGTTAATGAAAGTAAAGAGAAGGAGAAG < 41bp 0.683682868090634 0.892201968341254 NA NA prediction 0.417038200501238 Functional Gain - INPP5F ENSG00000198825 CDS Human protein_coding chr10:121551387 chr10:121551386 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30059 0 0 0 0 1 INPP5F chr10:121551381 3'AG 121551381 Downstream 6bp 27496 chr22 37328863 37328863 1 + C T GBM 37328864 + 37328844 37328884 41 TGGAGACAGCTACAGCCTGCGCTGGGAAACAATGAAAATGC TGGAGACAGCTACAGCCTGTGCTGGGAAACAATGAAAATGC < 41bp 0.500254884114801 0.708773863092743 NA NA prediction 0.417037957955885 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37328864 chr22:37328863 nonsynonymous SNV 0.200 1 20 hm7G_associated_SNPs_30060 0 0 0 0 2 CSF2RB chr22:37328807 3'AG 37328807 Downstream 57bp 27497 chr22 37328863 37328863 1 + C T GBM 37328864 + 37328844 37328884 41 TGGAGACAGCTACAGCCTGCGCTGGGAAACAATGAAAATGC TGGAGACAGCTACAGCCTGTGCTGGGAAACAATGAAAATGC < 41bp 0.500254884114801 0.708773863092743 NA NA prediction 0.417037957955885 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37328864 chr22:37328863 nonsynonymous SNV 0.200 1 20 hm7G_associated_SNPs_30060 0 0 0 0 2 CSF2RB chr22:37328946 5'GT 37328946 Upstream 84bp 27498 chr11 65988244 65988244 1 + C T BLCA 65988245 + 65988225 65988265 41 ACAGAAAGCATCCTCAGCACGCCAAAGCCCAAGCTCAAGTG ACAGAAAGCATCCTCAGCATGCCAAAGCCCAAGCTCAAGTG < 41bp 0.506697538383989 0.715212043244548 NA NA prediction 0.417029009721117 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:65988245 chr11:65988244 nonsynonymous SNV 0.433 3 20 hm7G_associated_SNPs_30062 0 0 1 0 1 PACS1 chr11:65988262 5'GT 65988262 Upstream 19bp 27499 chr9 136409627 136409627 1 + C T STAD 136409628 + 136409608 136409648 41 CCACATCCCGGCTGGTGCCCGAGACATCCAGATTGTAGAGA CCACATCCCGGCTGGTGCCTGAGACATCCAGATTGTAGAGA < 41bp 0.491939028817654 0.708510028219419 NA NA prediction 0.417020056438839 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136409628 chr9:136409627 stopgain 0.844 0 20 hm7G_associated_SNPs_30063 0 0 0 0 2 ADAMTSL2 chr9:136409592 3'AG 136409592 Downstream 36bp 27500 chr9 136409627 136409627 1 + C T STAD 136409628 + 136409608 136409648 41 CCACATCCCGGCTGGTGCCCGAGACATCCAGATTGTAGAGA CCACATCCCGGCTGGTGCCTGAGACATCCAGATTGTAGAGA < 41bp 0.491939028817654 0.708510028219419 NA NA prediction 0.417020056438839 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136409628 chr9:136409627 stopgain 0.844 0 20 hm7G_associated_SNPs_30063 0 0 0 0 2 ADAMTSL2 chr9:136409672 5'GT 136409672 Upstream 46bp 27501 chr7 150704278 150704278 1 + G A SKCM 150704279 + 150704259 150704299 41 ACGGCTGGAGGAACTGGGCGGGGAGCGGCTGCTGCAGCTGG ACGGCTGGAGGAACTGGGCAGGGAGCGGCTGCTGCAGCTGG < 41bp 0.553399470982127 0.761908110113056 NA NA prediction 0.417017278261858 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704279 chr7:150704278 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_30064 0 0 0 0 2 NOS3 chr7:150704190 3'AG 150704190 Downstream 89bp 27502 chr7 150704278 150704278 1 + G A SKCM 150704279 + 150704259 150704299 41 ACGGCTGGAGGAACTGGGCGGGGAGCGGCTGCTGCAGCTGG ACGGCTGGAGGAACTGGGCAGGGAGCGGCTGCTGCAGCTGG < 41bp 0.553399470982127 0.761908110113056 NA NA prediction 0.417017278261858 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704279 chr7:150704278 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_30064 0 0 0 0 2 NOS3 chr7:150704364 5'GT 150704364 Upstream 87bp 27503 chr4 1807537 1807537 1 + C T STAD 1807538 + 1807518 1807558 41 CTGCGGGAGTTTCTGCGGGCGCGGCGGCCCCCGGGCCTGGA CTGCGGGAGTTTCTGCGGGTGCGGCGGCCCCCGGGCCTGGA < 41bp 0.515376858568761 0.723884785825721 NA NA prediction 0.417015854513921 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807538 chr4:1807537 nonsynonymous SNV 0.822 4 20 hm7G_associated_SNPs_30065 0 0 1 0 1 FGFR3 chr4:1807477 3'AG 1807477 Downstream 61bp 27504 chr2 157407168 157407168 1 + C T STAD 157407169 + 157407149 157407189 41 AATGCCACGGGACCTTTCACGGACTCTGTGCGCAAAATGGA AATGCCACGGGACCTTTCATGGACTCTGTGCGCAAAATGGA < 41bp 0.532662196254055 0.74116781612736 NA NA prediction 0.417011239746611 Functional Gain - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407169 chr2:157407168 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_30069 0 0 1 1 2 GPD2 chr2:157407114 3'AG 157407114 Downstream 55bp 27505 chr2 157407168 157407168 1 + C T STAD 157407169 + 157407149 157407189 41 AATGCCACGGGACCTTTCACGGACTCTGTGCGCAAAATGGA AATGCCACGGGACCTTTCATGGACTCTGTGCGCAAAATGGA < 41bp 0.532662196254055 0.74116781612736 NA NA prediction 0.417011239746611 Functional Gain - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157407169 chr2:157407168 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_30069 0 0 1 1 2 GPD2 chr2:157407258 5'GT 157407258 Upstream 91bp 27506 chr20 60773734 60773734 1 + C T UCEC 60773735 + 60773715 60773755 41 AGGGAGGCAGAGTTGTGGCCGACCTGTCTTGCGTGGGAGAT AGGGAGGCAGAGTTGTGGCTGACCTGTCTTGCGTGGGAGAT < 41bp 0.493399095576148 0.708502995925909 NA NA prediction 0.417005991851818 Functional Gain - MTG2 ENSG00000101181 CDS Human protein_coding chr20:60773735 chr20:60773734 stopgain . 0 20 hm7G_associated_SNPs_30071 0 0 1 0 1 MTG2 chr20:60773690 3'AG 60773690 Downstream 45bp 27507 chr1 44683991 44683991 1 + G T COAD 44683992 + 44683972 44684012 41 TGTGCTAGTAGACTGTGCAGGTGCCTGTGTACTCGGAGCAG TGTGCTAGTAGACTGTGCATGTGCCTGTGTACTCGGAGCAG < 41bp 0.382867912327214 0.708500939166294 NA NA prediction 0.417001878332587 Functional Gain - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44683992 chr1:44683991 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_30073 0 0 1 0 1 DMAP1 chr1:44683983 3'AG 44683983 Downstream 9bp 27508 chr10 71154749 71154749 1 + C T COAD 71154750 + 71154730 71154770 41 GTACCTGGGTGAAATCGTCCGCAACATCTTAATCGACTTCA GTACCTGGGTGAAATCGTCTGCAACATCTTAATCGACTTCA < 41bp 0.492945980299312 0.708498228246009 NA NA prediction 0.416996456492018 Functional Gain - HK1 ENSG00000156515 CDS Human protein_coding chr10:71154750 chr10:71154749 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_30075 0 0 1 0 1 HK1 chr10:71154706 3'AG 71154706 Downstream 44bp 27509 chr9 133907471 133907471 1 + C T HNSC 133907472 + 133907452 133907492 41 ACTCCTCATCTCTCTAGACCGGCTCAACACGTTTGGGGACG ACTCCTCATCTCTCTAGACTGGCTCAACACGTTTGGGGACG < 41bp 0.528577278173815 0.737072026099125 NA NA prediction 0.41698949585062 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133907472 chr9:133907471 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_30077 0 0 0 0 2 LAMC3 chr9:133907432 3'AG 133907432 Downstream 40bp 27510 chr9 133907471 133907471 1 + C T HNSC 133907472 + 133907452 133907492 41 ACTCCTCATCTCTCTAGACCGGCTCAACACGTTTGGGGACG ACTCCTCATCTCTCTAGACTGGCTCAACACGTTTGGGGACG < 41bp 0.528577278173815 0.737072026099125 NA NA prediction 0.41698949585062 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133907472 chr9:133907471 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_30077 0 0 0 0 2 LAMC3 chr9:133907562 5'GT 133907562 Upstream 92bp 27511 chr4 128577819 128577819 1 + C T COAD 128577820 + 128577800 128577840 41 TTGTTGCTGTGAATGATGTCGATGTTACTACTGAAAACATC TTGTTGCTGTGAATGATGTTGATGTTACTACTGAAAACATC < 41bp 0.514610523552599 0.723100285080906 NA NA prediction 0.416979523056614 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128577820 chr4:128577819 synonymous SNV . 0 20 hm7G_associated_SNPs_30078 0 0 1 0 2 INTU chr4:128577791 3'AG 128577791 Downstream 29bp 27512 chr4 128577819 128577819 1 + C T COAD 128577820 + 128577800 128577840 41 TTGTTGCTGTGAATGATGTCGATGTTACTACTGAAAACATC TTGTTGCTGTGAATGATGTTGATGTTACTACTGAAAACATC < 41bp 0.514610523552599 0.723100285080906 NA NA prediction 0.416979523056614 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128577820 chr4:128577819 synonymous SNV . 0 20 hm7G_associated_SNPs_30078 0 0 1 0 2 INTU chr4:128577876 5'GT 128577876 Upstream 58bp 27513 chr21 47542436 47542436 1 + C T BLCA 47542437 + 47542417 47542457 41 AAGGCGAGCCCGGCCCACGCGGCCCCGAGGTATGTGTGGGT AAGGCGAGCCCGGCCCACGTGGCCCCGAGGTATGTGTGGGT < 41bp 0.507650607729496 0.716139735754671 NA NA prediction 0.41697825605035 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47542437 chr21:47542436 synonymous SNV . 0 20 hm7G_associated_SNPs_30079 2 0 0 0 2 COL6A2 chr21:47542410 3'AG 47542410 Downstream 27bp 27514 chr21 47542436 47542436 1 + C T BLCA 47542437 + 47542417 47542457 41 AAGGCGAGCCCGGCCCACGCGGCCCCGAGGTATGTGTGGGT AAGGCGAGCCCGGCCCACGTGGCCCCGAGGTATGTGTGGGT < 41bp 0.507650607729496 0.716139735754671 NA NA prediction 0.41697825605035 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47542437 chr21:47542436 synonymous SNV . 0 20 hm7G_associated_SNPs_30079 2 0 0 0 2 COL6A2 chr21:47542445 5'GT 47542445 Upstream 10bp 27515 chr22 20079412 20079412 1 + G A CESC 20079413 + 20079393 20079433 41 GTTTGTTATTAACCCCAACGGGAAATCCGAGGTCTGCATCC GTTTGTTATTAACCCCAACAGGAAATCCGAGGTCTGCATCC < 41bp 0.513182406677341 0.721662448128007 NA NA prediction 0.416960082901332 Functional Gain - DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20079413 chr22:20079412 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_30083 0 0 1 0 1 DGCR8 chr22:20079493 5'GT 20079493 Upstream 82bp 27516 chr19 6833931 6833931 1 + C T COAD 6833932 + 6833912 6833952 41 CTTCCAGGACAAACTACATCGCAGGGCTCAGGACAAAAAGA CTTCCAGGACAAACTACATTGCAGGGCTCAGGACAAAAAGA < 41bp 0.51761385008544 0.726093146675046 NA NA prediction 0.416958593179211 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833932 chr19:6833931 nonsynonymous SNV 0.612 0 20 hm7G_associated_SNPs_30084 0 0 0 0 2 VAV1 chr19:6833919 3'AG 6833919 Downstream 13bp 27517 chr19 6833931 6833931 1 + C T COAD 6833932 + 6833912 6833952 41 CTTCCAGGACAAACTACATCGCAGGGCTCAGGACAAAAAGA CTTCCAGGACAAACTACATTGCAGGGCTCAGGACAAAAAGA < 41bp 0.51761385008544 0.726093146675046 NA NA prediction 0.416958593179211 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6833932 chr19:6833931 nonsynonymous SNV 0.612 0 20 hm7G_associated_SNPs_30084 0 0 0 0 2 VAV1 chr19:6833964 5'GT 6833964 Upstream 34bp 27518 chr12 132636050 132636050 1 + G A LIHC 132636051 + 132636031 132636071 41 ACCTCCCCGCCTACCTGGTGGCCGCCTTCGCCAAGCGGCTG ACCTCCCCGCCTACCTGGTAGCCGCCTTCGCCAAGCGGCTG < 41bp 0.569472176927763 0.777950900287932 NA NA prediction 0.416957446720338 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636051 chr12:132636050 synonymous SNV . 0 20 hm7G_associated_SNPs_30086 0 0 1 0 1 NOC4L chr12:132636029 3'AG 132636029 Downstream 22bp 27519 chr22 41320407 41320407 1 + C T UCEC 41320408 + 41320388 41320428 41 ATCATGTTGGCCACTACCTCGGGATGGATGTCCATGACACT ATCATGTTGGCCACTACCTTGGGATGGATGTCCATGACACT < 41bp 0.513760160878181 0.722237551023501 NA NA prediction 0.41695478029064 Functional Gain - XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41320408 chr22:41320407 synonymous SNV . 0 20 hm7G_associated_SNPs_30088 0 0 1 11 2 XPNPEP3 chr22:41320366 3'AG 41320366 Downstream 42bp 27520 chr22 41320407 41320407 1 + C T UCEC 41320408 + 41320388 41320428 41 ATCATGTTGGCCACTACCTCGGGATGGATGTCCATGACACT ATCATGTTGGCCACTACCTTGGGATGGATGTCCATGACACT < 41bp 0.513760160878181 0.722237551023501 NA NA prediction 0.41695478029064 Functional Gain - XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41320408 chr22:41320407 synonymous SNV . 0 20 hm7G_associated_SNPs_30088 0 0 1 11 2 XPNPEP3 chr22:41320486 5'GT 41320486 Upstream 80bp 27521 chr19 39759844 39759844 1 + G A rs558318815 39759845 + 39759825 39759865 41 CACTCCCGCCTCTTCCCCAGGACCTGGGACCTGAGGCAGCT CACTCCCGCCTCTTCCCCAAGACCTGGGACCTGAGGCAGCT < 41bp 0.559782906860218 0.768259836707618 NA NA prediction 0.416953859694801 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39759845 chr19:39759844 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_30089 0 0 0 0 2 IFNL2 chr19:39759792 3'AG 39759792 Downstream 53bp 27522 chr19 39759844 39759844 1 + G A rs558318815 39759845 + 39759825 39759865 41 CACTCCCGCCTCTTCCCCAGGACCTGGGACCTGAGGCAGCT CACTCCCGCCTCTTCCCCAAGACCTGGGACCTGAGGCAGCT < 41bp 0.559782906860218 0.768259836707618 NA NA prediction 0.416953859694801 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39759845 chr19:39759844 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_30089 0 0 0 0 2 IFNL2 chr19:39759869 5'GT 39759869 Upstream 26bp 27523 chr11 130069858 130069858 1 + G A LUAD 130069859 + 130069839 130069879 41 TCTGCAGACTGTGGGCTGCGGTCATTCACGAGACAGGCTCG TCTGCAGACTGTGGGCTGCAGTCATTCACGAGACAGGCTCG < 41bp 0.49165233966468 0.708476915812615 NA NA prediction 0.416953831625229 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130069859 chr11:130069858 nonsynonymous SNV 0.551 3 20 hm7G_associated_SNPs_30090 0 0 0 0 1 ST14 chr11:130069846 3'AG 130069846 Downstream 13bp 27524 chr11 71175151 71175151 1 + C T LUSC 71175152 + 71175132 71175172 41 GGCCAATGAAGGCAACTACCGCGAGCTGCGCTGGTTCACCC GGCCAATGAAGGCAACTACTGCGAGCTGCGCTGGTTCACCC < 41bp 0.502883652387835 0.711358103890311 NA NA prediction 0.416948903004953 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71175152 chr11:71175151 nonsynonymous SNV 0.833 5 20 hm7G_associated_SNPs_30091 0 0 1 0 2 NADSYN1 chr11:71175099 3'AG 71175099 Downstream 53bp 27525 chr11 71175151 71175151 1 + C T LUSC 71175152 + 71175132 71175172 41 GGCCAATGAAGGCAACTACCGCGAGCTGCGCTGGTTCACCC GGCCAATGAAGGCAACTACTGCGAGCTGCGCTGGTTCACCC < 41bp 0.502883652387835 0.711358103890311 NA NA prediction 0.416948903004953 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71175152 chr11:71175151 nonsynonymous SNV 0.833 5 20 hm7G_associated_SNPs_30091 0 0 1 0 2 NADSYN1 chr11:71175188 5'GT 71175188 Upstream 38bp 27526 chr19 7615304 7615304 1 + C T BLCA 7615305 + 7615285 7615325 41 CTGCAGTGGAGGCGGGACGCGCGCTGTACAGGTGCAGCTCC CTGCAGTGGAGGCGGGACGTGCGCTGTACAGGTGCAGCTCC < 41bp 0.505211928616625 0.713684837855128 NA NA prediction 0.416945818477006 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7615305 chr19:7615304 synonymous SNV . 0 20 hm7G_associated_SNPs_30092 0 0 1 0 1 PNPLA6 chr19:7615315 5'GT 7615315 Upstream 12bp 27527 chr19 6183238 6183238 1 + C T SKCM 6183239 + 6183219 6183259 41 TATGGGTTGAGTGAGAGCTCGGGACCCCACACGATATCCAA TATGGGTTGAGTGAGAGCTTGGGACCCCACACGATATCCAA < 41bp 0.500984006782141 0.709456817808749 NA NA prediction 0.416945622053216 Functional Gain - ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6183239 chr19:6183238 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_30093 0 0 0 0 1 ACSBG2 chr19:6183283 5'GT 6183283 Upstream 46bp 27528 chr8 143569859 143569859 1 + G A SKCM 143569860 + 143569840 143569880 41 CAAGAGTGTCTTCTCCACGGGGCTGACAGGTGAGGGGCCCA CAAGAGTGTCTTCTCCACGAGGCTGACAGGTGAGGGGCCCA < 41bp 0.543352362320214 0.751821572598103 NA NA prediction 0.416938420555776 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143569860 chr8:143569859 nonsynonymous SNV 0.921 1 20 hm7G_associated_SNPs_30095 0 0 0 0 1 ADGRB1 chr8:143569868 5'GT 143569868 Upstream 10bp 27529 chr16 19063094 19063094 1 + C T SKCM 19063095 + 19063075 19063115 41 TCCTGTTGGTGTTGTTGATCGGGCTGTGTTTGGCAATAATA TCCTGTTGGTGTTGTTGATTGGGCTGTGTTTGGCAATAATA < 41bp 0.509437722070826 0.717905497517019 NA NA prediction 0.416935550892386 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19063095 chr16:19063094 synonymous SNV . 0 20 hm7G_associated_SNPs_30096 0 0 0 0 2 TMC7 chr16:19063008 3'AG 19063008 Downstream 87bp 27530 chr16 19063094 19063094 1 + C T SKCM 19063095 + 19063075 19063115 41 TCCTGTTGGTGTTGTTGATCGGGCTGTGTTTGGCAATAATA TCCTGTTGGTGTTGTTGATTGGGCTGTGTTTGGCAATAATA < 41bp 0.509437722070826 0.717905497517019 NA NA prediction 0.416935550892386 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19063095 chr16:19063094 synonymous SNV . 0 20 hm7G_associated_SNPs_30096 0 0 0 0 2 TMC7 chr16:19063138 5'GT 19063138 Upstream 45bp 27531 chr19 56473562 56473562 1 + G A SKCM 56473563 + 56473543 56473583 41 CTTTTTTGAAGGCTCTCGCGGCCGCACTGAGGCACCCTCAG CTTTTTTGAAGGCTCTCGCAGCCGCACTGAGGCACCCTCAG < 41bp 0.499757544182628 0.708466977091662 NA NA prediction 0.416933954183324 Functional Gain - NLRP8 ENSG00000179709 CDS Human protein_coding chr19:56473563 chr19:56473562 synonymous SNV . 0 20 hm7G_associated_SNPs_30097 0 0 0 0 1 NLRP8 chr19:56473603 5'GT 56473603 Upstream 42bp 27532 chr11 73588030 73588030 1 + G A rs141282994 73588031 + 73588011 73588051 41 GGGGACTCACTTCCGGGAAGGGGCGGAAGAGGTGGGCTGGT GGGGACTCACTTCCGGGAAAGGGCGGAAGAGGTGGGCTGGT < 41bp 0.536597909216532 0.745064730581585 NA NA prediction 0.416933642730107 Functional Gain - PAAF1 ENSG00000175575;ENSG00000181924 UTR5 Human protein_coding chr11:73588031 chr11:73588030 . . 0 20 hm7G_associated_SNPs_30098 0 0 0 0 1 PAAF1 chr11:73588113 5'GT 73588113 Upstream 84bp 27533 chr11 66325264 66325264 1 + G A rs201487054 66325265 + 66325245 66325285 41 CGCAAACTAGAGGACTTTCGGGACTACCGGCGTCTGCACAA CGCAAACTAGAGGACTTTCAGGACTACCGGCGTCTGCACAA < 41bp 0.546782080621522 0.755242110747972 NA NA prediction 0.416920060252899 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66325265 chr11:66325264 unknown 0.996 1 20 hm7G_associated_SNPs_30101 0 0 0 0 1 ACTN3 chr11:66325170 3'AG 66325170 Downstream 95bp 27534 chr10 125434377 125434377 1 + C T UCEC 125434378 + 125434358 125434398 41 GCAGAAGCGGAGGCGACAGCGAGCCACCAAGAAGATCAGCA GCAGAAGCGGAGGCGACAGTGAGCCACCAAGAAGATCAGCA < 41bp 0.53253943467063 0.74099768785757 NA NA prediction 0.416916506373882 Functional Gain - GPR26 ENSG00000154478 CDS Human protein_coding chr10:125434378 chr10:125434377 stopgain 0.995 1 20 hm7G_associated_SNPs_30103 0 0 0 0 1 GPR26 chr10:125434447 5'GT 125434447 Upstream 71bp 27535 chr19 19651928 19651928 1 + G A CESC 19651929 + 19651909 19651949 41 GGGGCGCGTGGGGCCCGTGGGGTCCCTGCTCGGGGAGCTGT GGGGCGCGTGGGGCCCGTGAGGTCCCTGCTCGGGGAGCTGT < 41bp 0.585050739835561 0.793506476808372 NA NA prediction 0.416911473945623 Functional Gain - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19651929 chr19:19651928 stopgain 0.969 1 20 hm7G_associated_SNPs_30104 0 0 0 0 1 CILP2 chr19:19651900 3'AG 19651900 Downstream 29bp 27536 chr1 230810833 230810833 1 + C T UCEC 230810834 + 230810814 230810854 41 TTAGAAGAAAAGTTACCCTCGCTTTTTAATCCTGGGAATCC TTAGAAGAAAAGTTACCCTTGCTTTTTAATCCTGGGAATCC < 41bp 0.517833502005013 0.72628611605565 NA NA prediction 0.416905228101274 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230810834 chr1:230810833 nonsynonymous SNV 0.092 0 20 hm7G_associated_SNPs_30105 0 0 1 0 2 COG2 chr1:230810744 3'AG 230810744 Downstream 90bp 27537 chr1 230810833 230810833 1 + C T UCEC 230810834 + 230810814 230810854 41 TTAGAAGAAAAGTTACCCTCGCTTTTTAATCCTGGGAATCC TTAGAAGAAAAGTTACCCTTGCTTTTTAATCCTGGGAATCC < 41bp 0.517833502005013 0.72628611605565 NA NA prediction 0.416905228101274 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230810834 chr1:230810833 nonsynonymous SNV 0.092 0 20 hm7G_associated_SNPs_30105 0 0 1 0 2 COG2 chr1:230810870 5'GT 230810870 Upstream 38bp 27538 chr17 45376748 45376748 1 + C T BLCA 45376749 + 45376729 45376769 41 CTACTGCAACTGTACCACGCGTACTGACACCTGCATGTCCA CTACTGCAACTGTACCACGTGTACTGACACCTGCATGTCCA < 41bp 0.520709310720032 0.729161803315238 NA NA prediction 0.416904985190413 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376749 chr17:45376748 nonsynonymous SNV 0.403 5 20 hm7G_associated_SNPs_30106 0 0 0 0 1 ITGB3 chr17:45376674 3'AG 45376674 Downstream 75bp 27539 chr14 24108199 24108199 1 + G A GBM 24108200 + 24108180 24108220 41 ACCGGGTAGCCGTGGTCACGGGGTCCACCAGTGGGTGAGTG ACCGGGTAGCCGTGGTCACAGGGTCCACCAGTGGGTGAGTG < 41bp 0.49609085749456 0.708449931361887 NA NA prediction 0.416899862723775 Functional Gain - DHRS2 ENSG00000100867 CDS Human protein_coding chr14:24108200 chr14:24108199 synonymous SNV . 0 20 hm7G_associated_SNPs_30107 0 0 1 0 1 DHRS2 chr14:24108213 5'GT 24108213 Upstream 15bp 27540 chr2 187501808 187501808 1 + C T SKCM 187501809 + 187501789 187501829 41 TAGGTTATTCTGTGGCTGTCGGAGATTTCAATGGTGATGGC TAGGTTATTCTGTGGCTGTTGGAGATTTCAATGGTGATGGC < 41bp 0.491612310376988 0.708448616561453 NA NA prediction 0.416897233122905 Functional Gain - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187501809 chr2:187501808 synonymous SNV . 0 20 hm7G_associated_SNPs_30108 0 0 1 0 2 ITGAV chr2:187501792 3'AG 187501792 Downstream 17bp 27541 chr2 187501808 187501808 1 + C T SKCM 187501809 + 187501789 187501829 41 TAGGTTATTCTGTGGCTGTCGGAGATTTCAATGGTGATGGC TAGGTTATTCTGTGGCTGTTGGAGATTTCAATGGTGATGGC < 41bp 0.491612310376988 0.708448616561453 NA NA prediction 0.416897233122905 Functional Gain - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187501809 chr2:187501808 synonymous SNV . 0 20 hm7G_associated_SNPs_30108 0 0 1 0 2 ITGAV chr2:187501836 5'GT 187501836 Upstream 29bp 27542 chr11 68678968 68678968 1 + C T UCEC 68678969 + 68678949 68678989 41 AAAGAAGCGGTTTTATTTGCGCTGTCTCAGAAAGAACTTGC AAAGAAGCGGTTTTATTTGTGCTGTCTCAGAAAGAACTTGC < 41bp 0.517984196933749 0.726429954002309 NA NA prediction 0.416891514137119 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68678969 chr11:68678968 nonsynonymous SNV 0.811 5 20 hm7G_associated_SNPs_30109 0 0 1 0 1 IGHMBP2 chr11:68678908 3'AG 68678908 Downstream 61bp 27543 chr19 39600718 39600718 1 + G T OV 39600719 + 39600699 39600739 41 AAGATCGTAGATGATGTCTGGGTGGTGAGACCCCTGTTTGG AAGATCGTAGATGATGTCTTGGTGGTGAGACCCCTGTTTGG < 41bp 0.685252952647425 0.893698612686993 NA NA prediction 0.416891320079136 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39600719 chr19:39600718 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30110 0 0 0 1 1 ACP7 chr19:39600693 3'AG 39600693 Downstream 26bp 27544 chr1 110032747 110032747 1 + G A UCEC 110032748 + 110032728 110032768 41 CCCGGCCCCCACGGCCACAGGCGGTAAGGACCTGGAATAGG CCCGGCCCCCACGGCCACAAGCGGTAAGGACCTGGAATAGG < 41bp 0.485966397797207 0.708443572625736 NA NA prediction 0.416887145251472 Functional Gain - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110032748 chr1:110032747 synonymous SNV . 0 20 hm7G_associated_SNPs_30112 0 0 0 0 1 ATXN7L2 chr1:110032750 5'GT 110032750 Upstream 4bp 27545 chr6 28327735 28327735 1 + G T LUAD 28327736 + 28327716 28327756 41 TGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCG TGGTGCTATTGGAGTATTTTGAGAGGCAGCTGGATGAGCCG < 41bp 0.360800077149901 0.708441008750637 NA NA prediction 0.416882017501274 Functional Gain - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28327736 chr6:28327735 nonsynonymous SNV 0.957 2 20 hm7G_associated_SNPs_30114 0 0 0 0 1 ZKSCAN3 chr6:28327765 5'GT 28327765 Upstream 31bp 27546 chrX 152830439 152830439 1 + G A COAD 152830440 + 152830420 152830460 41 GGAAGCCGGGCACGGGCCCGGGAAGGACGAGATGACCGACG GGAAGCCGGGCACGGGCCCAGGAAGGACGAGATGACCGACG < 41bp 0.564772242261715 0.773211665233411 NA NA prediction 0.416878845943392 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152830440 chrX:152830439 nonsynonymous SNV 0.455 1 20 hm7G_associated_SNPs_30115 0 0 0 0 1 ATP2B3 chrX:152830379 3'AG 152830379 Downstream 61bp 27547 chr14 71576295 71576295 1 + G T LUAD 71576296 + 71576276 71576316 41 AGACTGGAGTCCGCAGGAGGGCATGGAAGGCCATGTAAGTT AGACTGGAGTCCGCAGGAGTGCATGGAAGGCCATGTAAGTT < 41bp 0.385417136637059 0.708436886234277 NA NA prediction 0.416873772468554 Functional Gain - PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71576296 chr14:71576295 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30116 0 0 1 0 1 PCNX1 chr14:71576309 5'GT 71576309 Upstream 15bp 27548 chr16 314662 314662 1 + C T CESC 314663 + 314643 314683 41 ATGTTCCACCCCACCCTGCCGCGCGTGCTGCTGGAGCTGGC ATGTTCCACCCCACCCTGCTGCGCGTGCTGCTGGAGCTGGC < 41bp 0.51369592747385 0.722126870933202 NA NA prediction 0.416861886918705 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:314663 chr16:314662 nonsynonymous SNV 0.345 4 20 hm7G_associated_SNPs_30119 0 0 1 0 2 FAM234A chr16:314613 3'AG 314613 Downstream 50bp 27549 chr16 314662 314662 1 + C T CESC 314663 + 314643 314683 41 ATGTTCCACCCCACCCTGCCGCGCGTGCTGCTGGAGCTGGC ATGTTCCACCCCACCCTGCTGCGCGTGCTGCTGGAGCTGGC < 41bp 0.51369592747385 0.722126870933202 NA NA prediction 0.416861886918705 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:314663 chr16:314662 nonsynonymous SNV 0.345 4 20 hm7G_associated_SNPs_30119 0 0 1 0 2 FAM234A chr16:314715 5'GT 314715 Upstream 54bp 27550 chr1 109707213 109707213 1 + C T GBM 109707214 + 109707194 109707234 41 CTCCCTCGGCACAGGCATTCGGTTTGATGAGTGGGATGAGC CTCCCTCGGCACAGGCATTTGGTTTGATGAGTGGGATGAGC < 41bp 0.540150465007507 0.748572974842074 NA NA prediction 0.416845019669134 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109707214 chr1:109707213 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_30120 0 0 0 0 1 KIAA1324 chr1:109707121 3'AG 109707121 Downstream 93bp 27551 chr13 49795354 49795354 1 + G A LUSC 49795355 + 49795335 49795375 41 GGGCGGGAGAGAGGCCACCGGCAGACCGTCCGCGTCCTGCG GGGCGGGAGAGAGGCCACCAGCAGACCGTCCGCGTCCTGCG < 41bp 0.565922723590602 0.774342209826674 NA NA prediction 0.416838972472144 Functional Gain - MLNR ENSG00000102539 CDS Human protein_coding chr13:49795355 chr13:49795354 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_30122 0 0 0 0 1 MLNR chr13:49795374 5'GT 49795374 Upstream 21bp 27552 chr20 33851658 33851658 1 + C T ESCA 33851659 + 33851639 33851679 41 TGGGACTGGAGCACTCCAGCGACCCCAGCGCCATCATGGCG TGGGACTGGAGCACTCCAGTGACCCCAGCGCCATCATGGCG < 41bp 0.528348669518125 0.736767379323707 NA NA prediction 0.416837419611163 Functional Gain - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33851659 chr20:33851658 synonymous SNV . 0 20 hm7G_associated_SNPs_30123 0 0 0 0 2 MMP24 chr20:33851594 3'AG 33851594 Downstream 65bp 27553 chr20 33851658 33851658 1 + C T ESCA 33851659 + 33851639 33851679 41 TGGGACTGGAGCACTCCAGCGACCCCAGCGCCATCATGGCG TGGGACTGGAGCACTCCAGTGACCCCAGCGCCATCATGGCG < 41bp 0.528348669518125 0.736767379323707 NA NA prediction 0.416837419611163 Functional Gain - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33851659 chr20:33851658 synonymous SNV . 0 20 hm7G_associated_SNPs_30123 0 0 0 0 2 MMP24 chr20:33851755 5'GT 33851755 Upstream 98bp 27554 chr7 4780597 4780597 1 + C T BRCA 4780598 + 4780578 4780618 41 CCTCTGAAGATCCACATCCCGGAGCCGGACCTCCGGAGCAT CCTCTGAAGATCCACATCCTGGAGCCGGACCTCCGGAGCAT < 41bp 0.523784968580903 0.732203207108097 NA NA prediction 0.416836477054388 Functional Gain - FOXK1 ENSG00000164916 CDS Human protein_coding chr7:4780598 chr7:4780597 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_30124 0 0 1 0 1 FOXK1 chr7:4780654 5'GT 4780654 Upstream 58bp 27555 chr21 47549168 47549168 1 + G A BLCA 47549169 + 47549149 47549189 41 TCCGCACGGAAGAGGGGCCGGACGCCACCTTCCCCAGGACC TCCGCACGGAAGAGGGGCCAGACGCCACCTTCCCCAGGACC < 41bp 0.494137042278986 0.708418165372418 NA NA prediction 0.416836330744836 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47549169 chr21:47549168 synonymous SNV . 0 20 hm7G_associated_SNPs_30125 0 0 0 0 1 COL6A2 chr21:47549110 3'AG 47549110 Downstream 59bp 27556 chr2 220396798 220396798 1 + G A UCEC 220396799 + 220396779 220396819 41 CCCTACATCCACCAGCTGGGGTTCGGGGTGTCCCCAGGCTT CCCTACATCCACCAGCTGGAGTTCGGGGTGTCCCCAGGCTT < 41bp 0.510797671885528 0.719215641003538 NA NA prediction 0.416835938236019 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396799 chr2:220396798 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_30127 0 0 1 0 2 ASIC4 chr2:220396723 3'AG 220396723 Downstream 76bp 27557 chr2 220396798 220396798 1 + G A UCEC 220396799 + 220396779 220396819 41 CCCTACATCCACCAGCTGGGGTTCGGGGTGTCCCCAGGCTT CCCTACATCCACCAGCTGGAGTTCGGGGTGTCCCCAGGCTT < 41bp 0.510797671885528 0.719215641003538 NA NA prediction 0.416835938236019 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396799 chr2:220396798 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_30127 0 0 1 0 2 ASIC4 chr2:220396850 5'GT 220396850 Upstream 53bp 27558 chr9 71867780 71867780 1 + C T UCEC 71867781 + 71867761 71867801 41 TATGCAGTTCCAATCAAAACGCACAAGCCAGACCCTGGCAC TATGCAGTTCCAATCAAAATGCACAAGCCAGACCCTGGCAC < 41bp 0.52695035955887 0.735366046917179 NA NA prediction 0.416831374716619 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71867781 chr9:71867780 nonsynonymous SNV 0.169 2 20 hm7G_associated_SNPs_30128 1 0 1 0 2 TJP2 chr9:71867731 3'AG 71867731 Downstream 50bp 27559 chr9 71867780 71867780 1 + C T UCEC 71867781 + 71867761 71867801 41 TATGCAGTTCCAATCAAAACGCACAAGCCAGACCCTGGCAC TATGCAGTTCCAATCAAAATGCACAAGCCAGACCCTGGCAC < 41bp 0.52695035955887 0.735366046917179 NA NA prediction 0.416831374716619 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71867781 chr9:71867780 nonsynonymous SNV 0.169 2 20 hm7G_associated_SNPs_30128 1 0 1 0 2 TJP2 chr9:71867816 5'GT 71867816 Upstream 37bp 27560 chr6 17507500 17507500 1 + C T PRAD 17507501 + 17507481 17507521 41 AACATGTTTAATCATCTTTCGGCCGTCAGCGAAAGCATCCC AACATGTTTAATCATCTTTTGGCCGTCAGCGAAAGCATCCC < 41bp 0.504742397930719 0.713156777394924 NA NA prediction 0.41682875892841 Functional Gain - CAP2 ENSG00000112186 CDS Human protein_coding chr6:17507501 chr6:17507500 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_30130 0 0 0 0 1 CAP2 chr6:17507543 5'GT 17507543 Upstream 44bp 27561 chr1 231337208 231337208 1 + C T CESC 231337209 + 231337189 231337229 41 TTGATCTGACTTTGGACAGCGAGCCGCTGCTGCAGGCCATC TTGATCTGACTTTGGACAGTGAGCCGCTGCTGCAGGCCATC < 41bp 0.513809783679323 0.722221515052465 NA NA prediction 0.416823462746283 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231337209 chr1:231337208 synonymous SNV . 0 20 hm7G_associated_SNPs_30132 0 0 0 0 1 TRIM67 chr1:231337263 5'GT 231337263 Upstream 56bp 27562 chr17 42850753 42850753 1 + G A LUAD 42850754 + 42850734 42850774 41 CGGCTCATGGTCTACCGACGGGAGGGTCTGCCTGAGCCCAG CGGCTCATGGTCTACCGACAGGAGGGTCTGCCTGAGCCCAG < 41bp 0.518026182190286 0.726437542745428 NA NA prediction 0.416822721110286 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42850754 chr17:42850753 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30133 0 0 0 0 1 ADAM11 chr17:42850795 5'GT 42850795 Upstream 43bp 27563 chr11 117864081 117864081 1 + C T BLCA 117864082 + 117864062 117864102 41 AAGCATCTTCAGTCACTTCCGAGAGTATGAGATTGCCATTC AAGCATCTTCAGTCACTTCTGAGAGTATGAGATTGCCATTC < 41bp 0.5142943249238 0.72270427826528 NA NA prediction 0.41681990668296 Functional Gain - IL10RA ENSG00000110324 CDS Human protein_coding chr11:117864082 chr11:117864081 stopgain 0.068 0 20 hm7G_associated_SNPs_30134 0 0 0 0 1 IL10RA chr11:117864125 5'GT 117864125 Upstream 45bp 27564 chr12 69084480 69084480 1 + C T LUSC 69084481 + 69084461 69084501 41 CTTGGAACAGGAGGGAAGTCGCCCCGACTTACGCAGTCTTC CTTGGAACAGGAGGGAAGTTGCCCCGACTTACGCAGTCTTC < 41bp 0.507173581318154 0.715582310004273 NA NA prediction 0.416817457372238 Functional Gain - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69084481 chr12:69084480 nonsynonymous SNV 0.772 3 20 hm7G_associated_SNPs_30135 0 0 1 0 3 NUP107 chr12:69084383 3'AG 69084383 Downstream 98bp 27565 chr12 69084480 69084480 1 + C T LUSC 69084481 + 69084461 69084501 41 CTTGGAACAGGAGGGAAGTCGCCCCGACTTACGCAGTCTTC CTTGGAACAGGAGGGAAGTTGCCCCGACTTACGCAGTCTTC < 41bp 0.507173581318154 0.715582310004273 NA NA prediction 0.416817457372238 Functional Gain - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69084481 chr12:69084480 nonsynonymous SNV 0.772 3 20 hm7G_associated_SNPs_30135 0 0 1 0 3 NUP107 chr12:69084411 3'AG 69084411 Downstream 70bp 27566 chr12 69084480 69084480 1 + C T LUSC 69084481 + 69084461 69084501 41 CTTGGAACAGGAGGGAAGTCGCCCCGACTTACGCAGTCTTC CTTGGAACAGGAGGGAAGTTGCCCCGACTTACGCAGTCTTC < 41bp 0.507173581318154 0.715582310004273 NA NA prediction 0.416817457372238 Functional Gain - NUP107 ENSG00000111581 CDS Human protein_coding chr12:69084481 chr12:69084480 nonsynonymous SNV 0.772 3 20 hm7G_associated_SNPs_30135 0 0 1 0 3 NUP107 chr12:69084526 5'GT 69084526 Upstream 47bp 27567 chr17 80521332 80521332 1 + C T SKCM 80521333 + 80521313 80521353 41 CTGAGTCTCCAGTGAAGGCCGTACAGCCACACATCTCGCCC CTGAGTCTCCAGTGAAGGCTGTACAGCCACACATCTCGCCC < 41bp 0.502580724714572 0.71098192104048 NA NA prediction 0.416802392651815 Functional Gain - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80521333 chr17:80521332 synonymous SNV . 0 20 hm7G_associated_SNPs_30136 0 0 1 0 1 FOXK2 chr17:80521424 5'GT 80521424 Upstream 93bp 27568 chr22 25597425 25597425 1 + G A SKCM 25597426 + 25597406 25597446 41 AAGAGCCATGGAGACCTTGGGGGCAGCTACAAGGTACTGGG AAGAGCCATGGAGACCTTGAGGGCAGCTACAAGGTACTGGG < 41bp 0.543343215582957 0.751743996650934 NA NA prediction 0.416801562135953 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25597426 chr22:25597425 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_30137 0 0 0 0 2 CRYBB3 chr22:25597344 3'AG 25597344 Downstream 82bp 27569 chr22 25597425 25597425 1 + G A SKCM 25597426 + 25597406 25597446 41 AAGAGCCATGGAGACCTTGGGGGCAGCTACAAGGTACTGGG AAGAGCCATGGAGACCTTGAGGGCAGCTACAAGGTACTGGG < 41bp 0.543343215582957 0.751743996650934 NA NA prediction 0.416801562135953 Functional Gain - CRYBB3 ENSG00000100053 CDS Human protein_coding chr22:25597426 chr22:25597425 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_30137 0 0 0 0 2 CRYBB3 chr22:25597438 5'GT 25597438 Upstream 14bp 27570 chr16 11076760 11076760 1 + C T UCEC 11076761 + 11076741 11076781 41 TTAATTATACATCATGCACCGCTGGTGAACTCGTTAGCTGA TTAATTATACATCATGCACTGCTGGTGAACTCGTTAGCTGA < 41bp 0.512352387542651 0.720751982918948 NA NA prediction 0.416799190752595 Functional Gain - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11076761 chr16:11076760 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_30138 0 0 1 0 2 CLEC16A chr16:11076735 3'AG 11076735 Downstream 26bp 27571 chr16 11076760 11076760 1 + C T UCEC 11076761 + 11076741 11076781 41 TTAATTATACATCATGCACCGCTGGTGAACTCGTTAGCTGA TTAATTATACATCATGCACTGCTGGTGAACTCGTTAGCTGA < 41bp 0.512352387542651 0.720751982918948 NA NA prediction 0.416799190752595 Functional Gain - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11076761 chr16:11076760 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_30138 0 0 1 0 2 CLEC16A chr16:11076848 5'GT 11076848 Upstream 89bp 27572 chr4 1807166 1807166 1 + C T rs140594137 1807167 + 1807147 1807187 41 GCATTGACAAGGACCGGGCCGCCAAGCCTGTCACCGTAGCC GCATTGACAAGGACCGGGCTGCCAAGCCTGTCACCGTAGCC < 41bp 0.523444655968035 0.731843497956715 NA NA prediction 0.416797683977361 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807167 chr4:1807166 synonymous SNV . 0 20 hm7G_associated_SNPs_30141 1 0 1 0 2 FGFR3 chr4:1807082 3'AG 1807082 Downstream 85bp 27573 chr4 1807166 1807166 1 + C T rs140594137 1807167 + 1807147 1807187 41 GCATTGACAAGGACCGGGCCGCCAAGCCTGTCACCGTAGCC GCATTGACAAGGACCGGGCTGCCAAGCCTGTCACCGTAGCC < 41bp 0.523444655968035 0.731843497956715 NA NA prediction 0.416797683977361 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1807167 chr4:1807166 synonymous SNV . 0 20 hm7G_associated_SNPs_30141 1 0 1 0 2 FGFR3 chr4:1807203 5'GT 1807203 Upstream 38bp 27574 chr22 40068312 40068312 1 + C T COAD 40068313 + 40068293 40068333 41 GAGGCGCTTCTTCAAGGACCGGTGAGTGGCCAGGCTGGATT GAGGCGCTTCTTCAAGGACTGGTGAGTGGCCAGGCTGGATT < 41bp 0.508404673699734 0.716803479169672 NA NA prediction 0.416797610939877 Functional Gain - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40068313 chr22:40068312 stopgain 1.000 1 20 hm7G_associated_SNPs_30142 0 0 0 0 1 CACNA1I chr22:40068313 5'GT 40068313 Upstream 2bp 27575 chr1 42865128 42865128 1 + C T STAD 42865129 + 42865109 42865149 41 CCCGGATGTGGTGCTTGTACGGGTACCCACACCCTCAGTGC CCCGGATGTGGTGCTTGTATGGGTACCCACACCCTCAGTGC < 41bp 0.505801002854472 0.714196212981974 NA NA prediction 0.416790420255003 Functional Gain - RIMKLA ENSG00000177181 CDS Human protein_coding chr1:42865129 chr1:42865128 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_30146 0 0 1 0 1 RIMKLA chr1:42865075 3'AG 42865075 Downstream 54bp 27576 chr17 37882045 37882045 1 + G A SKCM 37882046 + 37882026 37882066 41 TCCCTGACCTGCTGGAAAAGGGGGAGCGGCTGCCCCAGCCC TCCCTGACCTGCTGGAAAAAGGGGAGCGGCTGCCCCAGCCC < 41bp 0.520761482866884 0.729155523157604 NA NA prediction 0.41678808058144 Functional Gain - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37882046 chr17:37882045 synonymous SNV . 0 20 hm7G_associated_SNPs_30147 0 0 1 0 2 ERBB2 chr17:37881960 3'AG 37881960 Downstream 86bp 27577 chr17 37882045 37882045 1 + G A SKCM 37882046 + 37882026 37882066 41 TCCCTGACCTGCTGGAAAAGGGGGAGCGGCTGCCCCAGCCC TCCCTGACCTGCTGGAAAAAGGGGAGCGGCTGCCCCAGCCC < 41bp 0.520761482866884 0.729155523157604 NA NA prediction 0.41678808058144 Functional Gain - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37882046 chr17:37882045 synonymous SNV . 0 20 hm7G_associated_SNPs_30147 0 0 1 0 2 ERBB2 chr17:37882106 5'GT 37882106 Upstream 62bp 27578 chr17 75201418 75201418 1 + C T OV 75201419 + 75201399 75201439 41 GAATACAAAAGTCTTTGGTCGGCCTATCAGGTAGATGTGGG GAATACAAAAGTCTTTGGTTGGCCTATCAGGTAGATGTGGG < 41bp 0.506659015075008 0.715052294242801 NA NA prediction 0.416786558335585 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75201419 chr17:75201418 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_30148 0 0 1 0 2 SEC14L1 chr17:75201358 3'AG 75201358 Downstream 61bp 27579 chr17 75201418 75201418 1 + C T OV 75201419 + 75201399 75201439 41 GAATACAAAAGTCTTTGGTCGGCCTATCAGGTAGATGTGGG GAATACAAAAGTCTTTGGTTGGCCTATCAGGTAGATGTGGG < 41bp 0.506659015075008 0.715052294242801 NA NA prediction 0.416786558335585 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75201419 chr17:75201418 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_30148 0 0 1 0 2 SEC14L1 chr17:75201428 5'GT 75201428 Upstream 11bp 27580 chr1 12027052 12027052 1 + G A UCEC 12027053 + 12027033 12027073 41 GCCCTCCCCAGCCCTGCCCGGATGTCTATTGGTTCCCCATC GCCCTCCCCAGCCCTGCCCAGATGTCTATTGGTTCCCCATC < 41bp 0.530663086735442 0.739052112261301 NA NA prediction 0.416778051051718 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027053 chr1:12027052 synonymous SNV . 0 20 hm7G_associated_SNPs_30149 0 0 1 0 2 PLOD1 chr1:12027044 3'AG 12027044 Downstream 9bp 27581 chr1 12027052 12027052 1 + G A UCEC 12027053 + 12027033 12027073 41 GCCCTCCCCAGCCCTGCCCGGATGTCTATTGGTTCCCCATC GCCCTCCCCAGCCCTGCCCAGATGTCTATTGGTTCCCCATC < 41bp 0.530663086735442 0.739052112261301 NA NA prediction 0.416778051051718 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12027053 chr1:12027052 synonymous SNV . 0 20 hm7G_associated_SNPs_30149 0 0 1 0 2 PLOD1 chr1:12027148 5'GT 12027148 Upstream 97bp 27582 chr3 48493208 48493208 1 + C T COAD 48493209 + 48493189 48493229 41 CGAGACTCACTACATCAGACGGAATCCGTTCTAGAGGAACA CGAGACTCACTACATCAGATGGAATCCGTTCTAGAGGAACA < 41bp 0.495989228774166 0.708387551745642 NA NA prediction 0.416775103491284 Functional Gain - ATRIP ENSG00000164053 CDS Human protein_coding chr3:48493209 chr3:48493208 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_30151 0 0 0 0 2 ATRIP chr3:48493135 3'AG 48493135 Downstream 74bp 27583 chr3 48493208 48493208 1 + C T COAD 48493209 + 48493189 48493229 41 CGAGACTCACTACATCAGACGGAATCCGTTCTAGAGGAACA CGAGACTCACTACATCAGATGGAATCCGTTCTAGAGGAACA < 41bp 0.495989228774166 0.708387551745642 NA NA prediction 0.416775103491284 Functional Gain - ATRIP ENSG00000164053 CDS Human protein_coding chr3:48493209 chr3:48493208 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_30151 0 0 0 0 2 ATRIP chr3:48493305 5'GT 48493305 Upstream 98bp 27584 chr15 75044486 75044486 1 + G A LUSC 75044487 + 75044467 75044507 41 ACTGTGATTGGCAGGGAGCGGCGGCCCCGGCTCTCTGACAG ACTGTGATTGGCAGGGAGCAGCGGCCCCGGCTCTCTGACAG < 41bp 0.509351623348358 0.71773916088439 NA NA prediction 0.416775075072064 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75044487 chr15:75044486 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_30152 0 0 0 0 1 CYP1A2 chr15:75044465 3'AG 75044465 Downstream 22bp 27585 chr12 113321125 113321125 1 + C T PRAD 113321126 + 113321106 113321146 41 GCTTCGTACAAAAACTCTGCGGAATACCCGGAACCCCATCT GCTTCGTACAAAAACTCTGTGGAATACCCGGAACCCCATCT < 41bp 0.492054838848326 0.708384570679847 NA NA prediction 0.416769141359695 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113321126 chr12:113321125 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_30154 0 0 0 0 2 RPH3A chr12:113321098 3'AG 113321098 Downstream 28bp 27586 chr12 113321125 113321125 1 + C T PRAD 113321126 + 113321106 113321146 41 GCTTCGTACAAAAACTCTGCGGAATACCCGGAACCCCATCT GCTTCGTACAAAAACTCTGTGGAATACCCGGAACCCCATCT < 41bp 0.492054838848326 0.708384570679847 NA NA prediction 0.416769141359695 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113321126 chr12:113321125 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_30154 0 0 0 0 2 RPH3A chr12:113321207 5'GT 113321207 Upstream 83bp 27587 chr17 76203085 76203085 1 + G A rs373091855 76203086 + 76203066 76203106 41 GCCTCTCCAAAGAGCTTTCGGAGCTGACACTGACAGCTTCA GCCTCTCCAAAGAGCTTTCAGAGCTGACACTGACAGCTTCA < 41bp 0.512501141812425 0.720884554269027 NA NA prediction 0.416766824913202 Functional Gain - AFMID ENSG00000183077 CDS Human protein_coding chr17:76203086 chr17:76203085 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_30156 0 0 1 2 1 AFMID chr17:76202992 3'AG 76202992 Downstream 94bp 27588 chr12 101480503 101480503 1 + C T SKCM 101480504 + 101480484 101480524 41 TGGTGACTGTCAGCACTTTCGCTGCCTTTAAGTGGGCGTTA TGGTGACTGTCAGCACTTTTGCTGCCTTTAAGTGGGCGTTA < 41bp 0.511545354391025 0.719926530747329 NA NA prediction 0.416762352712607 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101480504 chr12:101480503 synonymous SNV . 0 20 hm7G_associated_SNPs_30157 0 0 0 0 2 ANO4 chr12:101480438 3'AG 101480438 Downstream 66bp 27589 chr12 101480503 101480503 1 + C T SKCM 101480504 + 101480484 101480524 41 TGGTGACTGTCAGCACTTTCGCTGCCTTTAAGTGGGCGTTA TGGTGACTGTCAGCACTTTTGCTGCCTTTAAGTGGGCGTTA < 41bp 0.511545354391025 0.719926530747329 NA NA prediction 0.416762352712607 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101480504 chr12:101480503 synonymous SNV . 0 20 hm7G_associated_SNPs_30157 0 0 0 0 2 ANO4 chr12:101480602 5'GT 101480602 Upstream 100bp 27590 chr3 184081334 184081334 1 + G T THCA 184081335 + 184081315 184081355 41 TGAAGGATATTGACCCGGAGGGCAAGAAGTTTGACCGAGGT TGAAGGATATTGACCCGGATGGCAAGAAGTTTGACCGAGGT < 41bp 0.683933855444676 0.892314466947649 NA NA prediction 0.416761223005945 Functional Gain - POLR2H ENSG00000163882 CDS Human protein_coding chr3:184081335 chr3:184081334 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_30158 0 0 1 0 1 POLR2H chr3:184081353 5'GT 184081353 Upstream 20bp 27591 chr16 31419145 31419145 1 + C T rs370427756 31419146 + 31419126 31419166 41 CTGAATACCATCAGCTCAGCGCCTCCGCAGGACCACGTGTT CTGAATACCATCAGCTCAGTGCCTCCGCAGGACCACGTGTT < 41bp 0.51191636109363 0.720295955544121 NA NA prediction 0.416759188900982 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31419146 chr16:31419145 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30159 0 0 0 0 1 ITGAD chr16:31419087 3'AG 31419087 Downstream 59bp 27592 chr16 23700924 23700924 1 + G A rs149623133 23700925 + 23700905 23700945 41 GCCCGGCTGCCCTACCTACGGACCTGGTTCCGCACCCGCAG GCCCGGCTGCCCTACCTACAGACCTGGTTCCGCACCCGCAG < 41bp 0.543921853091057 0.752300203286243 NA NA prediction 0.416756700390371 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700925 chr16:23700924 nonsynonymous SNV 0.619 1 20 hm7G_associated_SNPs_30160 0 0 1 0 1 PLK1 chr16:23700997 5'GT 23700997 Upstream 74bp 27593 chr14 24524988 24524988 1 + G A SKCM 24524989 + 24524969 24525009 41 GCTGGTGCTGGACAACGCCGGGCTTAAGACGTGAGGCCAGT GCTGGTGCTGGACAACGCCAGGCTTAAGACGTGAGGCCAGT < 41bp 0.54206851686375 0.750446855492481 NA NA prediction 0.416756677257463 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24524989 chr14:24524988 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30161 0 0 0 0 2 CARMIL3 chr14:24524910 3'AG 24524910 Downstream 79bp 27594 chr14 24524988 24524988 1 + G A SKCM 24524989 + 24524969 24525009 41 GCTGGTGCTGGACAACGCCGGGCTTAAGACGTGAGGCCAGT GCTGGTGCTGGACAACGCCAGGCTTAAGACGTGAGGCCAGT < 41bp 0.54206851686375 0.750446855492481 NA NA prediction 0.416756677257463 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24524989 chr14:24524988 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30161 0 0 0 0 2 CARMIL3 chr14:24524998 5'GT 24524998 Upstream 11bp 27595 chr7 31127287 31127287 1 + G A SKCM 31127288 + 31127268 31127308 41 TCTGTGGTGGGTGATCAAAGGCCCTGTGGTTGGCTCTATCA TCTGTGGTGGGTGATCAAAAGCCCTGTGGTTGGCTCTATCA < 41bp 0.519690209484547 0.728063591130836 NA NA prediction 0.416746763292578 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31127288 chr7:31127287 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30162 0 0 0 0 2 ADCYAP1R1 chr7:31127241 3'AG 31127241 Downstream 47bp 27596 chr7 31127287 31127287 1 + G A SKCM 31127288 + 31127268 31127308 41 TCTGTGGTGGGTGATCAAAGGCCCTGTGGTTGGCTCTATCA TCTGTGGTGGGTGATCAAAAGCCCTGTGGTTGGCTCTATCA < 41bp 0.519690209484547 0.728063591130836 NA NA prediction 0.416746763292578 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31127288 chr7:31127287 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30162 0 0 0 0 2 ADCYAP1R1 chr7:31127310 5'GT 31127310 Upstream 24bp 27597 chr8 27311740 27311740 1 + C T HNSC 27311741 + 27311721 27311761 41 CAATGTCATGGAGCTGGTGCGGGCCGTGCTGGAGCTCAAGA CAATGTCATGGAGCTGGTGTGGGCCGTGCTGGAGCTCAAGA < 41bp 0.527104608299392 0.735477867920016 NA NA prediction 0.416746519241248 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27311741 chr8:27311740 nonsynonymous SNV 0.957 2 20 hm7G_associated_SNPs_30163 0 0 1 0 2 PTK2B chr8:27311671 3'AG 27311671 Downstream 70bp 27598 chr8 27311740 27311740 1 + C T HNSC 27311741 + 27311721 27311761 41 CAATGTCATGGAGCTGGTGCGGGCCGTGCTGGAGCTCAAGA CAATGTCATGGAGCTGGTGTGGGCCGTGCTGGAGCTCAAGA < 41bp 0.527104608299392 0.735477867920016 NA NA prediction 0.416746519241248 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27311741 chr8:27311740 nonsynonymous SNV 0.957 2 20 hm7G_associated_SNPs_30163 0 0 1 0 2 PTK2B chr8:27311808 5'GT 27311808 Upstream 69bp 27599 chr19 45287585 45287585 1 + G A LUSC 45287586 + 45287566 45287606 41 CGGCTATGTGAGCTCAGATGGCAGCATCCTGCAGACCATCC CGGCTATGTGAGCTCAGATAGCAGCATCCTGCAGACCATCC < 41bp 0.553526670610099 0.761897813384725 NA NA prediction 0.416742285549251 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45287586 chr19:45287585 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_30164 0 0 0 0 2 CBLC chr19:45287521 3'AG 45287521 Downstream 65bp 27600 chr19 45287585 45287585 1 + G A LUSC 45287586 + 45287566 45287606 41 CGGCTATGTGAGCTCAGATGGCAGCATCCTGCAGACCATCC CGGCTATGTGAGCTCAGATAGCAGCATCCTGCAGACCATCC < 41bp 0.553526670610099 0.761897813384725 NA NA prediction 0.416742285549251 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45287586 chr19:45287585 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_30164 0 0 0 0 2 CBLC chr19:45287658 5'GT 45287658 Upstream 74bp 27601 chr4 20544188 20544188 1 + C T UCEC 20544189 + 20544169 20544209 41 TTGCTTGGATACAGTCGTCCGATGTAGCAACAAGGGTTTGA TTGCTTGGATACAGTCGTCTGATGTAGCAACAAGGGTTTGA < 41bp 0.494608122680844 0.708364283799361 NA NA prediction 0.416728567598722 Functional Gain - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20544189 chr4:20544188 stopgain 0.974 1 20 hm7G_associated_SNPs_30168 0 0 1 0 2 SLIT2 chr4:20544117 3'AG 20544117 Downstream 72bp 27602 chr4 20544188 20544188 1 + C T UCEC 20544189 + 20544169 20544209 41 TTGCTTGGATACAGTCGTCCGATGTAGCAACAAGGGTTTGA TTGCTTGGATACAGTCGTCTGATGTAGCAACAAGGGTTTGA < 41bp 0.494608122680844 0.708364283799361 NA NA prediction 0.416728567598722 Functional Gain - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20544189 chr4:20544188 stopgain 0.974 1 20 hm7G_associated_SNPs_30168 0 0 1 0 2 SLIT2 chr4:20544249 5'GT 20544249 Upstream 62bp 27603 chr20 17410116 17410116 1 + C T rs41276380 17410117 + 17410097 17410137 41 CAGGAGAAGTTTCTGCTGCCGCCAACAACAATATCTGTGGA CAGGAGAAGTTTCTGCTGCTGCCAACAACAATATCTGTGGA < 41bp 0.489525210219825 0.708362806993062 NA NA prediction 0.416725613986125 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17410117 chr20:17410116 synonymous SNV . 0 20 hm7G_associated_SNPs_30169 0 0 1 0 2 PCSK2 chr20:17410080 3'AG 17410080 Downstream 37bp 27604 chr20 17410116 17410116 1 + C T rs41276380 17410117 + 17410097 17410137 41 CAGGAGAAGTTTCTGCTGCCGCCAACAACAATATCTGTGGA CAGGAGAAGTTTCTGCTGCTGCCAACAACAATATCTGTGGA < 41bp 0.489525210219825 0.708362806993062 NA NA prediction 0.416725613986125 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17410117 chr20:17410116 synonymous SNV . 0 20 hm7G_associated_SNPs_30169 0 0 1 0 2 PCSK2 chr20:17410168 5'GT 17410168 Upstream 53bp 27605 chr6 37426573 37426573 1 + C T UCEC 37426574 + 37426554 37426594 41 CTGCTTCCAGTGAACTCTTCGAACCCTACTATGGTAGGGAC CTGCTTCCAGTGAACTCTTTGAACCCTACTATGGTAGGGAC < 41bp 0.530647450098068 0.739008674985586 NA NA prediction 0.416722449775035 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37426574 chr6:37426573 synonymous SNV . 0 20 hm7G_associated_SNPs_30170 0 0 1 0 1 CMTR1 chr6:37426586 5'GT 37426586 Upstream 14bp 27606 chr2 33774800 33774800 1 + C T HNSC 33774801 + 33774781 33774821 41 ATCTCAAGCCAACCTTCTGCGAACACTGTGCGGGATTTGTA ATCTCAAGCCAACCTTCTGTGAACACTGTGCGGGATTTGTA < 41bp 0.517116619791207 0.725468716070057 NA NA prediction 0.416704192557698 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33774801 chr2:33774800 synonymous SNV . 0 20 hm7G_associated_SNPs_30172 0 0 0 0 1 RASGRP3 chr2:33774818 5'GT 33774818 Upstream 19bp 27607 chr19 35832794 35832794 1 + C T COAD 35832795 + 35832775 35832815 41 CCGGTGAAGGTCCAGCACTCGGGTGCCTACTGGTGCCAGGG CCGGTGAAGGTCCAGCACTTGGGTGCCTACTGGTGCCAGGG < 41bp 0.494800250645517 0.708349397173008 NA NA prediction 0.416698794346017 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35832795 chr19:35832794 nonsynonymous SNV 0.012 3 20 hm7G_associated_SNPs_30175 0 0 0 0 1 CD22 chr19:35832868 5'GT 35832868 Upstream 75bp 27608 chr4 55561763 55561763 1 + C T UCEC 55561764 + 55561744 55561784 41 ACTTAATAGTCCGCGTGGGCGACGAGATTAGGCTGTTATGC ACTTAATAGTCCGCGTGGGTGACGAGATTAGGCTGTTATGC < 41bp 0.497669492446914 0.708344429084648 NA NA prediction 0.416688858169297 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55561764 chr4:55561763 synonymous SNV . 0 20 hm7G_associated_SNPs_30176 0 0 0 0 1 KIT chr4:55561678 3'AG 55561678 Downstream 86bp 27609 chr16 57608917 57608917 1 + G A SKCM 57608918 + 57608898 57608938 41 GGGCCTCACCGTGCTGCTGGGAACCACCTGGGCCTTGGCCT GGGCCTCACCGTGCTGCTGAGAACCACCTGGGCCTTGGCCT < 41bp 0.528560886709002 0.736904707318519 NA NA prediction 0.416687641219034 Functional Gain - ADGRG5 ENSG00000159618 CDS Human protein_coding chr16:57608918 chr16:57608917 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_30177 0 0 0 0 1 ADGRG5 chr16:57609004 5'GT 57609004 Upstream 88bp 27610 chr17 26943948 26943948 1 - G A STAD 26943947 - 26943927 26943967 41 CCGCCTCTTCAGCAAAGTTCGGCCCCCTGTTGGGGGTATCT CCGCCTCTTCAGCAAAGTTTGGCCCCCTGTTGGGGGTATCT < 41bp 0.522107828790566 0.730450609593671 NA NA prediction 0.416685561606209 Functional Gain - KIAA0100 ENSG00000007202 CDS Human protein_coding chr17:26943947 chr17:26943948 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30178 0 0 1 0 2 KIAA0100 chr17:26943907 5'GT 26943907 Upstream 42bp 27611 chr17 26943948 26943948 1 - G A STAD 26943947 - 26943927 26943967 41 CCGCCTCTTCAGCAAAGTTCGGCCCCCTGTTGGGGGTATCT CCGCCTCTTCAGCAAAGTTTGGCCCCCTGTTGGGGGTATCT < 41bp 0.522107828790566 0.730450609593671 NA NA prediction 0.416685561606209 Functional Gain - KIAA0100 ENSG00000007202 CDS Human protein_coding chr17:26943947 chr17:26943948 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30178 0 0 1 0 2 KIAA0100 chr17:26944017 3'AG 26944017 Downstream 70bp 27612 chr7 138862971 138862971 1 + G T LUAD 138862972 + 138862952 138862992 41 CGTTTCAGATACAATACCAGGGAGGCAGTGCATGGCTTCCT CGTTTCAGATACAATACCATGGAGGCAGTGCATGGCTTCCT < 41bp 0.693721773122091 0.902063857192188 NA NA prediction 0.416684168140194 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138862972 chr7:138862971 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_30179 0 0 0 0 2 TTC26 chr7:138862960 3'AG 138862960 Downstream 12bp 27613 chr7 138862971 138862971 1 + G T LUAD 138862972 + 138862952 138862992 41 CGTTTCAGATACAATACCAGGGAGGCAGTGCATGGCTTCCT CGTTTCAGATACAATACCATGGAGGCAGTGCATGGCTTCCT < 41bp 0.693721773122091 0.902063857192188 NA NA prediction 0.416684168140194 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138862972 chr7:138862971 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_30179 0 0 0 0 2 TTC26 chr7:138863048 5'GT 138863048 Upstream 78bp 27614 chr7 5338914 5338914 1 + C T SKCM 5338915 + 5338895 5338935 41 TGGCGCGGGTGATCTGGGCCGACATGCTCTCCATCGCCGTG TGGCGCGGGTGATCTGGGCTGACATGCTCTCCATCGCCGTG < 41bp 0.507949558228508 0.716291090149527 NA NA prediction 0.416683063842038 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338915 chr7:5338914 synonymous SNV . 0 20 hm7G_associated_SNPs_30180 0 0 0 0 1 SLC29A4 chr7:5338871 3'AG 5338871 Downstream 44bp 27615 chr6 7862586 7862586 1 + C T UCEC 7862587 + 7862567 7862607 41 TGGGCAGAGACGGCCCTTACGACAAGCAGCCCTTCATGGTG TGGGCAGAGACGGCCCTTATGACAAGCAGCCCTTCATGGTG < 41bp 0.498061148587439 0.708341510878302 NA NA prediction 0.416683021756603 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862587 chr6:7862586 synonymous SNV . 0 20 hm7G_associated_SNPs_30181 0 0 0 0 1 BMP6 chr6:7862534 3'AG 7862534 Downstream 53bp 27616 chr16 56970652 56970652 1 + G T KIRP 56970653 + 56970633 56970673 41 ATCGGGGACAGTATCCTGAGGATTCCTCAAGTGATGGTTTA ATCGGGGACAGTATCCTGATGATTCCTCAAGTGATGGTTTA < 41bp 0.619250356192793 0.82758404714295 NA NA prediction 0.416667381900313 Functional Gain - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56970653 chr16:56970652 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_30183 0 0 1 0 2 HERPUD1 chr16:56970599 3'AG 56970599 Downstream 54bp 27617 chr16 56970652 56970652 1 + G T KIRP 56970653 + 56970633 56970673 41 ATCGGGGACAGTATCCTGAGGATTCCTCAAGTGATGGTTTA ATCGGGGACAGTATCCTGATGATTCCTCAAGTGATGGTTTA < 41bp 0.619250356192793 0.82758404714295 NA NA prediction 0.416667381900313 Functional Gain - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56970653 chr16:56970652 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_30183 0 0 1 0 2 HERPUD1 chr16:56970729 5'GT 56970729 Upstream 78bp 27618 chr7 2632682 2632682 1 + C T COAD 2632683 + 2632663 2632703 41 GTGAAGCAGCTCCTGCAGGCGAAGGCCGACCTGGAGAAGGA GTGAAGCAGCTCCTGCAGGTGAAGGCCGACCTGGAGAAGGA < 41bp 0.486969015243942 0.708333585760508 NA NA prediction 0.416667171521016 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2632683 chr7:2632682 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_30184 0 0 0 0 2 IQCE chr7:2632656 3'AG 2632656 Downstream 27bp 27619 chr7 2632682 2632682 1 + C T COAD 2632683 + 2632663 2632703 41 GTGAAGCAGCTCCTGCAGGCGAAGGCCGACCTGGAGAAGGA GTGAAGCAGCTCCTGCAGGTGAAGGCCGACCTGGAGAAGGA < 41bp 0.486969015243942 0.708333585760508 NA NA prediction 0.416667171521016 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2632683 chr7:2632682 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_30184 0 0 0 0 2 IQCE chr7:2632760 5'GT 2632760 Upstream 79bp 27620 chr14 24538396 24538396 1 + C T UCEC 24538397 + 24538377 24538417 41 CCTGAAGCCCAAGAGGACACGGCGGGCACAGTCCTGTGACA CCTGAAGCCCAAGAGGACATGGCGGGCACAGTCCTGTGACA < 41bp 0.506617235357352 0.714949262888286 NA NA prediction 0.416664055061866 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24538397 chr14:24538396 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30187 0 0 0 0 2 CARMIL3 chr14:24538346 3'AG 24538346 Downstream 51bp 27621 chr14 24538396 24538396 1 + C T UCEC 24538397 + 24538377 24538417 41 CCTGAAGCCCAAGAGGACACGGCGGGCACAGTCCTGTGACA CCTGAAGCCCAAGAGGACATGGCGGGCACAGTCCTGTGACA < 41bp 0.506617235357352 0.714949262888286 NA NA prediction 0.416664055061866 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24538397 chr14:24538396 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30187 0 0 0 0 2 CARMIL3 chr14:24538456 5'GT 24538456 Upstream 61bp 27622 chr17 79988007 79988007 1 + G T UCEC 79988008 + 79987988 79988028 41 GGCACGGGACGAGGCGCAGGGCGCTTGCCTACAGCAGAAGC GGCACGGGACGAGGCGCAGTGCGCTTGCCTACAGCAGAAGC < 41bp 0.356088698953666 0.708331268747517 NA NA prediction 0.416662537495035 Functional Gain - LRRC45 ENSG00000169683 CDS Human protein_coding chr17:79988008 chr17:79988007 nonsynonymous SNV 0.017 1 20 hm7G_associated_SNPs_30188 0 0 1 0 1 LRRC45 chr17:79987941 3'AG 79987941 Downstream 67bp 27623 chr2 210570306 210570306 1 + C T rs143089892 210570307 + 210570287 210570327 41 TTGTTTTCTCCAATCAGGACGGAGTAACCAAGAGCCCAGAA TTGTTTTCTCCAATCAGGATGGAGTAACCAAGAGCCCAGAA < 41bp 0.518817427147246 0.727146903584189 NA NA prediction 0.416658952873886 Functional Gain - MAP2 ENSG00000078018 CDS Human protein_coding chr2:210570307 chr2:210570306 synonymous SNV . 0 20 hm7G_associated_SNPs_30189 0 0 0 0 1 MAP2 chr2:210570304 3'AG 210570304 Downstream 3bp 27624 chr1 36505553 36505553 1 + C T UCEC 36505554 + 36505534 36505574 41 TACTCGTATCATCTTTTATCGGGATGGTGTTTCAGAGGGGC TACTCGTATCATCTTTTATTGGGATGGTGTTTCAGAGGGGC < 41bp 0.501959168977758 0.710287796795626 NA NA prediction 0.416657255635735 Functional Gain - AGO3 ENSG00000126070 CDS Human protein_coding chr1:36505554 chr1:36505553 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30191 0 0 1 0 1 AGO3 chr1:36505585 5'GT 36505585 Upstream 33bp 27625 chr12 6886971 6886971 1 + G A SKCM 6886972 + 6886952 6886992 41 CATAGGTGCCCAACGCTCTGGGAGAGCCCCAGGTGCCCTCC CATAGGTGCCCAACGCTCTAGGAGAGCCCCAGGTGCCCTCC < 41bp 0.566479906715226 0.774807846555186 NA NA prediction 0.41665587967992 Functional Gain - LAG3 ENSG00000089692 CDS Human protein_coding chr12:6886972 chr12:6886971 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_30192 0 0 0 0 1 LAG3 chr12:6886957 3'AG 6886957 Downstream 15bp 27626 chr17 66339910 66339910 1 + G A TGCT 66339911 + 66339891 66339931 41 CAGAGGTGCTGCAGCAGGCGGGTTACGTCACTGGGATAATA CAGAGGTGCTGCAGCAGGCAGGTTACGTCACTGGGATAATA < 41bp 0.536564271275586 0.744891340755166 NA NA prediction 0.41665413895916 Functional Gain - ARSG ENSG00000141337 CDS Human protein_coding chr17:66339911 chr17:66339910 synonymous SNV . 0 20 hm7G_associated_SNPs_30193 0 0 0 0 1 ARSG chr17:66339932 5'GT 66339932 Upstream 23bp 27627 chr18 47101835 47101835 1 + C T UCEC 47101836 + 47101816 47101856 41 GATGTCCTCCACACCTACACGCGTTCCTTCGGCTTGAGCAT GATGTCCTCCACACCTACATGCGTTCCTTCGGCTTGAGCAT < 41bp 0.514332253715706 0.722658231794071 NA NA prediction 0.41665195615673 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47101836 chr18:47101835 nonsynonymous SNV 0.649 5 20 hm7G_associated_SNPs_30194 0 0 0 0 1 LIPG chr18:47101739 3'AG 47101739 Downstream 97bp 27628 chr8 61734470 61734470 1 + C T PRAD 61734471 + 61734451 61734491 41 AAACTAATGTCCAGGGAGCCGGAAACAGAGCGTGTGGTAAG AAACTAATGTCCAGGGAGCTGGAAACAGAGCGTGTGGTAAG < 41bp 0.509916429182838 0.718238790988942 NA NA prediction 0.416644723612209 Functional Gain - CHD7 ENSG00000171316 CDS Human protein_coding chr8:61734471 chr8:61734470 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30195 0 0 1 0 1 CHD7 chr8:61734486 5'GT 61734486 Upstream 17bp 27629 chr5 126758373 126758373 1 + C T rs114704569 126758374 + 126758354 126758394 41 CCATGCAGGATGGCACGTACGGGCTGAACTGTGCTGAGCGC CCATGCAGGATGGCACGTATGGGCTGAACTGTGCTGAGCGC < 41bp 0.518371459895115 0.726693246488384 NA NA prediction 0.416643573186537 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126758374 chr5:126758373 synonymous SNV . 0 20 hm7G_associated_SNPs_30196 1 0 0 0 2 MEGF10 chr5:126758362 3'AG 126758362 Downstream 12bp 27630 chr5 126758373 126758373 1 + C T rs114704569 126758374 + 126758354 126758394 41 CCATGCAGGATGGCACGTACGGGCTGAACTGTGCTGAGCGC CCATGCAGGATGGCACGTATGGGCTGAACTGTGCTGAGCGC < 41bp 0.518371459895115 0.726693246488384 NA NA prediction 0.416643573186537 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126758374 chr5:126758373 synonymous SNV . 0 20 hm7G_associated_SNPs_30196 1 0 0 0 2 MEGF10 chr5:126758464 5'GT 126758464 Upstream 92bp 27631 chr19 11486232 11486232 1 + G A rs543788823 11486233 + 11486213 11486253 41 TCAACCCGAGAGCTTTTCCGGCTCCTGTGCTCTGCCCATGA TCAACCCGAGAGCTTTTCCAGCTCCTGTGCTCTGCCCATGA < 41bp 0.55249836587345 0.760816929143069 NA NA prediction 0.416637126539237 Functional Gain - SWSAP1 ENSG00000173928 CDS Human protein_coding chr19:11486233 chr19:11486232 nonsynonymous SNV 0.031 0 20 hm7G_associated_SNPs_30197 0 0 1 0 1 SWSAP1 chr19:11486189 3'AG 11486189 Downstream 44bp 27632 chr17 81043127 81043127 1 + G A UCEC 81043128 + 81043108 81043148 41 CACGCCGCAGCAGGATATCGGCCGGAGGACCACAGGCTTCC CACGCCGCAGCAGGATATCAGCCGGAGGACCACAGGCTTCC < 41bp 0.541221651060692 0.749539294636561 NA NA prediction 0.416635287151738 Functional Gain - METRNL ENSG00000176845 CDS Human protein_coding chr17:81043128 chr17:81043127 nonsynonymous SNV 0.335 0 20 hm7G_associated_SNPs_30199 0 0 0 0 1 METRNL chr17:81043199 5'GT 81043199 Upstream 73bp 27633 chr19 18966754 18966754 1 + C T SKCM 18966755 + 18966735 18966775 41 CCGGTGCTGGTGTGTGCTCCGAGCAACATCGCCGTGGACCA CCGGTGCTGGTGTGTGCTCTGAGCAACATCGCCGTGGACCA < 41bp 0.49483000942473 0.708312135218928 NA NA prediction 0.416624270437857 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966755 chr19:18966754 nonsynonymous SNV 0.042 5 20 hm7G_associated_SNPs_30201 0 0 1 0 1 UPF1 chr19:18966734 3'AG 18966734 Downstream 21bp 27634 chr2 29217596 29217596 1 + G T LIHC 29217597 + 29217577 29217617 41 CCTCTCACCCTTAGGTCCCGGATGTTACAGGTCAGAGCCCT CCTCTCACCCTTAGGTCCCTGATGTTACAGGTCAGAGCCCT < 41bp 0.448612725912422 0.708308360281187 NA NA prediction 0.416616720562375 Functional Gain - TOGARAM2 ENSG00000189350 UTR5 Human protein_coding chr2:29217597 chr2:29217596 . . 0 20 hm7G_associated_SNPs_30203 0 0 0 0 1 TOGARAM2 chr2:29217591 3'AG 29217591 Downstream 6bp 27635 chr19 45572367 45572367 1 + G T UCEC 45572368 + 45572348 45572388 41 AAGAAAAGATGATCCAGCAGGAGCATGAGCGGCAGGTGAAG AAGAAAAGATGATCCAGCATGAGCATGAGCGGCAGGTGAAG < 41bp 0.700613352773384 0.908921134537991 NA NA prediction 0.416615563529214 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45572368 chr19:45572367 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30204 0 0 1 1 2 CLASRP chr19:45572324 3'AG 45572324 Downstream 44bp 27636 chr19 45572367 45572367 1 + G T UCEC 45572368 + 45572348 45572388 41 AAGAAAAGATGATCCAGCAGGAGCATGAGCGGCAGGTGAAG AAGAAAAGATGATCCAGCATGAGCATGAGCGGCAGGTGAAG < 41bp 0.700613352773384 0.908921134537991 NA NA prediction 0.416615563529214 Functional Gain - CLASRP ENSG00000104859 CDS Human protein_coding chr19:45572368 chr19:45572367 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30204 0 0 1 1 2 CLASRP chr19:45572382 5'GT 45572382 Upstream 16bp 27637 chr3 53769479 53769479 1 + C T rs1045958 53769480 + 53769460 53769500 41 TCTTCATCATGCTGAGCAGCGCTGCCCTGGCCGCAGAGGAC TCTTCATCATGCTGAGCAGTGCTGCCCTGGCCGCAGAGGAC < 41bp 0.505430319993852 0.71373462737936 NA NA prediction 0.416608614771017 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53769480 chr3:53769479 synonymous SNV . 0 20 hm7G_associated_SNPs_30206 1 0 0 0 2 CACNA1D chr3:53769401 3'AG 53769401 Downstream 79bp 27638 chr3 53769479 53769479 1 + C T rs1045958 53769480 + 53769460 53769500 41 TCTTCATCATGCTGAGCAGCGCTGCCCTGGCCGCAGAGGAC TCTTCATCATGCTGAGCAGTGCTGCCCTGGCCGCAGAGGAC < 41bp 0.505430319993852 0.71373462737936 NA NA prediction 0.416608614771017 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53769480 chr3:53769479 synonymous SNV . 0 20 hm7G_associated_SNPs_30206 1 0 0 0 2 CACNA1D chr3:53769530 5'GT 53769530 Upstream 52bp 27639 chr4 5749975 5749975 1 + C T rs34947207 5749976 + 5749956 5749996 41 CAGCTGATGATGACTCTGACGGAAAGAATGATTGCAGCCGA CAGCTGATGATGACTCTGATGGAAAGAATGATTGCAGCCGA < 41bp 0.493135466618707 0.708304114020409 NA NA prediction 0.416608228040818 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5749976 chr4:5749975 nonsynonymous SNV 0.148 0 20 hm7G_associated_SNPs_30207 0 0 0 0 1 EVC chr4:5750033 5'GT 5750033 Upstream 59bp 27640 chr12 126137060 126137060 1 + C T rs16919359 126137061 + 126137041 126137081 41 GATGACCGAGTCACCATCGCGGAGCTGGGAGTGCAGCTCGT GATGACCGAGTCACCATCGTGGAGCTGGGAGTGCAGCTCGT < 41bp 0.52867040964767 0.736973794884279 NA NA prediction 0.416606770473217 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126137061 chr12:126137060 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_30208 0 0 0 0 1 TMEM132B chr12:126136987 3'AG 126136987 Downstream 74bp 27641 chr12 132237711 132237711 1 + C T CESC 132237712 + 132237692 132237732 41 GCTACTACATGCTACCGGACGGCACTTACTGCCTGGCGCCG GCTACTACATGCTACCGGATGGCACTTACTGCCTGGCGCCG < 41bp 0.518432132074407 0.726732289878124 NA NA prediction 0.416600315607434 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132237712 chr12:132237711 synonymous SNV . 0 20 hm7G_associated_SNPs_30210 0 0 1 0 1 SFSWAP chr12:132237668 3'AG 132237668 Downstream 44bp 27642 chr5 137713511 137713511 1 + C T COAD 137713512 + 137713492 137713532 41 GCTACAAGAGATATTCAGCCGAGGTAAGAACGGATAGTCTT GCTACAAGAGATATTCAGCTGAGGTAAGAACGGATAGTCTT < 41bp 0.502364777211135 0.710664718379189 NA NA prediction 0.416599882336107 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137713512 chr5:137713511 stopgain 0.998 1 20 hm7G_associated_SNPs_30211 0 0 0 0 1 KDM3B chr5:137713514 5'GT 137713514 Upstream 4bp 27643 chr2 170863525 170863525 1 + C T DLBC 170863526 + 170863506 170863546 41 CAGGTTCTTCAGGGCTTCTCGGTGGACAAAGGAGAATTCAC CAGGTTCTTCAGGGCTTCTTGGTGGACAAAGGAGAATTCAC < 41bp 0.526158027833069 0.73445623809098 NA NA prediction 0.416596420515822 Functional Gain - UBR3 ENSG00000144357 CDS Human protein_coding chr2:170863526 chr2:170863525 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_30212 0 0 1 2 1 UBR3 chr2:170863500 3'AG 170863500 Downstream 26bp 27644 chr16 67228323 67228323 1 + G A CESC 67228324 + 67228304 67228344 41 ATACCCTCTTGGCCATCCGGGCCCCATCAGGCACCAGCCTG ATACCCTCTTGGCCATCCGAGCCCCATCAGGCACCAGCCTG < 41bp 0.552730779479872 0.761027610900149 NA NA prediction 0.416593662840553 Functional Gain - E2F4 ENSG00000205250 CDS Human protein_coding chr16:67228324 chr16:67228323 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_30213 0 0 1 0 2 E2F4 chr16:67228301 3'AG 67228301 Downstream 23bp 27645 chr16 67228323 67228323 1 + G A CESC 67228324 + 67228304 67228344 41 ATACCCTCTTGGCCATCCGGGCCCCATCAGGCACCAGCCTG ATACCCTCTTGGCCATCCGAGCCCCATCAGGCACCAGCCTG < 41bp 0.552730779479872 0.761027610900149 NA NA prediction 0.416593662840553 Functional Gain - E2F4 ENSG00000205250 CDS Human protein_coding chr16:67228324 chr16:67228323 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_30213 0 0 1 0 2 E2F4 chr16:67228362 5'GT 67228362 Upstream 40bp 27646 chr1 156834198 156834198 1 + G A rs2274496 156834199 + 156834179 156834219 41 GGAGCTCCGTGATCTGAGGGGCCTGGGGGAGCTGAGAAACC GGAGCTCCGTGATCTGAGGAGCCTGGGGGAGCTGAGAAACC < 41bp 0.542417739063223 0.750713977145895 NA NA prediction 0.416592476165344 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156834199 chr1:156834198 nonsynonymous SNV 0.914 1 20 hm7G_associated_SNPs_30214 0 0 0 0 2 NTRK1 chr1:156834146 3'AG 156834146 Downstream 53bp 27647 chr1 156834198 156834198 1 + G A rs2274496 156834199 + 156834179 156834219 41 GGAGCTCCGTGATCTGAGGGGCCTGGGGGAGCTGAGAAACC GGAGCTCCGTGATCTGAGGAGCCTGGGGGAGCTGAGAAACC < 41bp 0.542417739063223 0.750713977145895 NA NA prediction 0.416592476165344 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156834199 chr1:156834198 nonsynonymous SNV 0.914 1 20 hm7G_associated_SNPs_30214 0 0 0 0 2 NTRK1 chr1:156834220 5'GT 156834220 Upstream 23bp 27648 chr16 85111052 85111052 1 + C T COAD 85111053 + 85111033 85111073 41 AAACCACAGCTGCTGCCCCCGGAGTCCCGGGAGAAGCCCGC AAACCACAGCTGCTGCCCCTGGAGTCCCGGGAGAAGCCCGC < 41bp 0.546897567072289 0.755192096104761 NA NA prediction 0.416589058064943 Functional Gain - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85111053 chr16:85111052 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_30215 0 0 1 0 1 KIAA0513 chr16:85111031 3'AG 85111031 Downstream 22bp 27649 chr11 9466730 9466730 1 + G T COAD 9466731 + 9466711 9466751 41 TTTTGGAGGCCCAGCACCAGGGATGAATTGAGTTATCTCTT TTTTGGAGGCCCAGCACCATGGATGAATTGAGTTATCTCTT < 41bp 0.677230598089907 0.885523640591854 NA NA prediction 0.416586085003895 Functional Gain - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9466731 chr11:9466730 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30217 0 0 1 0 1 IPO7 chr11:9466644 3'AG 9466644 Downstream 87bp 27650 chr2 166221687 166221687 1 + C T UCEC 166221688 + 166221668 166221708 41 AGTTCATCTGAAGGCAGCACGGTTGATATTGGAGCTCCCGC AGTTCATCTGAAGGCAGCATGGTTGATATTGGAGCTCCCGC < 41bp 0.505164473493278 0.713456243172756 NA NA prediction 0.416583539358956 Functional Gain - SCN2A ENSG00000136531 CDS Human protein_coding chr2:166221688 chr2:166221687 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_30218 1 0 0 0 2 SCN2A chr2:166221653 3'AG 166221653 Downstream 35bp 27651 chr2 166221687 166221687 1 + C T UCEC 166221688 + 166221668 166221708 41 AGTTCATCTGAAGGCAGCACGGTTGATATTGGAGCTCCCGC AGTTCATCTGAAGGCAGCATGGTTGATATTGGAGCTCCCGC < 41bp 0.505164473493278 0.713456243172756 NA NA prediction 0.416583539358956 Functional Gain - SCN2A ENSG00000136531 CDS Human protein_coding chr2:166221688 chr2:166221687 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_30218 1 0 0 0 2 SCN2A chr2:166221773 5'GT 166221773 Upstream 87bp 27652 chr8 26481822 26481822 1 + C T rs139123217 26481823 + 26481803 26481843 41 AAGCGCTTGTGAAGGATCACGGTAGGTTGCACTGAGTCAAT AAGCGCTTGTGAAGGATCATGGTAGGTTGCACTGAGTCAAT < 41bp 0.496880725038409 0.7082896036267 NA NA prediction 0.416579207253399 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26481823 chr8:26481822 synonymous SNV . 0 20 hm7G_associated_SNPs_30222 0 0 1 0 1 DPYSL2 chr8:26481823 5'GT 26481823 Upstream 2bp 27653 chr20 42683106 42683106 1 + C T COAD 42683107 + 42683087 42683127 41 AGAACCCCAGTGCCACTTTCGGTGACGTGTCCAAAATCGTG AGAACCCCAGTGCCACTTTTGGTGACGTGTCCAAAATCGTG < 41bp 0.495704722165275 0.708288863818967 NA NA prediction 0.416577727637934 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42683107 chr20:42683106 nonsynonymous SNV 0.431 0 20 hm7G_associated_SNPs_30223 0 0 0 0 1 TOX2 chr20:42683166 5'GT 42683166 Upstream 61bp 27654 chr17 48557115 48557115 1 + G A BRCA 48557116 + 48557096 48557136 41 CGCTGCTGCGGCTCAGCGGGGTGCAACGGTGGGTAGTGGGG CGCTGCTGCGGCTCAGCGGAGTGCAACGGTGGGTAGTGGGG < 41bp 0.492965000947627 0.708288789892773 NA NA prediction 0.416577579785547 Functional Gain - RSAD1 ENSG00000136444 CDS Human protein_coding chr17:48557116 chr17:48557115 synonymous SNV . 0 20 hm7G_associated_SNPs_30224 0 0 1 0 1 RSAD1 chr17:48557123 5'GT 48557123 Upstream 9bp 27655 chr17 18002986 18002986 1 + C T UCEC 18002987 + 18002967 18003007 41 GTGATCGCTGTGGCGCGCACGGCTGACGTCATCATCATGAT GTGATCGCTGTGGCGCGCATGGCTGACGTCATCATCATGAT < 41bp 0.513149614973903 0.721438249404399 NA NA prediction 0.416577268860991 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18002987 chr17:18002986 nonsynonymous SNV 0.269 4 20 hm7G_associated_SNPs_30225 0 0 1 1 2 DRG2 chr17:18002947 3'AG 18002947 Downstream 40bp 27656 chr17 18002986 18002986 1 + C T UCEC 18002987 + 18002967 18003007 41 GTGATCGCTGTGGCGCGCACGGCTGACGTCATCATCATGAT GTGATCGCTGTGGCGCGCATGGCTGACGTCATCATCATGAT < 41bp 0.513149614973903 0.721438249404399 NA NA prediction 0.416577268860991 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:18002987 chr17:18002986 nonsynonymous SNV 0.269 4 20 hm7G_associated_SNPs_30225 0 0 1 1 2 DRG2 chr17:18003037 5'GT 18003037 Upstream 52bp 27657 chr11 60785464 60785464 1 + G A rs2074233 60785465 + 60785445 60785485 41 CCCAAACTTGGAGCTGGCCGGCACCCAGCCAGCCTTTTCAG CCCAAACTTGGAGCTGGCCAGCACCCAGCCAGCCTTTTCAG < 41bp 0.544435678567353 0.752722723147556 NA NA prediction 0.416574089160406 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60785465 chr11:60785464 nonsynonymous SNV 0.255 0 20 hm7G_associated_SNPs_30227 0 0 0 0 1 CD6 chr11:60785485 5'GT 60785485 Upstream 22bp 27658 chr13 114504770 114504770 1 + G A CESC 114504771 + 114504751 114504791 41 TCACCGCCGCCGTCCTGGGGGCCTTCAAGGACATGGTGAGG TCACCGCCGCCGTCCTGGGAGCCTTCAAGGACATGGTGAGG < 41bp 0.483594476364678 0.708286375293044 NA NA prediction 0.416572750586087 Functional Gain - TMEM255B ENSG00000184497 CDS Human protein_coding chr13:114504771 chr13:114504770 synonymous SNV . 0 20 hm7G_associated_SNPs_30229 0 0 0 0 1 TMEM255B chr13:114504785 5'GT 114504785 Upstream 16bp 27659 chr19 5626445 5626445 1 + C T UCEC 5626446 + 5626426 5626466 41 ATGAAGGTGGTAATCCTGACGAAATTGAAATTACCTCCGAG ATGAAGGTGGTAATCCTGATGAAATTGAAATTACCTCCGAG < 41bp 0.529195339505616 0.7374806724622 NA NA prediction 0.416570665913169 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5626446 chr19:5626445 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_30230 0 0 1 0 2 SAFB chr19:5626416 3'AG 5626416 Downstream 30bp 27660 chr19 5626445 5626445 1 + C T UCEC 5626446 + 5626426 5626466 41 ATGAAGGTGGTAATCCTGACGAAATTGAAATTACCTCCGAG ATGAAGGTGGTAATCCTGATGAAATTGAAATTACCTCCGAG < 41bp 0.529195339505616 0.7374806724622 NA NA prediction 0.416570665913169 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5626446 chr19:5626445 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_30230 0 0 1 0 2 SAFB chr19:5626500 5'GT 5626500 Upstream 56bp 27661 chr22 51153406 51153406 1 + C T SARC 51153407 + 51153387 51153427 41 TGCGGCCAGACATCGCAGACGCAGACTCCAGAGCCGCCACC TGCGGCCAGACATCGCAGATGCAGACTCCAGAGCCGCCACC < 41bp 0.490112093765485 0.708283565006961 NA NA prediction 0.416567130013922 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51153407 chr22:51153406 synonymous SNV . 0 20 hm7G_associated_SNPs_30231 0 0 0 0 1 SHANK3 chr22:51153345 3'AG 51153345 Downstream 62bp 27662 chrX 47083885 47083885 1 + C T LUAD 47083886 + 47083866 47083906 41 TCCAGTGAGAGTGCGTATGCGCAACCATCCCCCACGCAAGA TCCAGTGAGAGTGCGTATGTGCAACCATCCCCCACGCAAGA < 41bp 0.526205877783177 0.734488791282993 NA NA prediction 0.416565826999633 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47083886 chrX:47083885 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30232 0 0 1 0 1 CDK16 chrX:47083917 5'GT 47083917 Upstream 33bp 27663 chr15 67813876 67813876 1 + G T UCEC 67813877 + 67813857 67813897 41 CACTGCTCCAAGGCTCCCTGGCAGGACCTGGCCCGGCAGAA CACTGCTCCAAGGCTCCCTTGCAGGACCTGGCCCGGCAGAA < 41bp 0.695013445091189 0.903293006533261 NA NA prediction 0.416559122884144 Functional Gain - C15orf61 ENSG00000189227 CDS Human protein_coding chr15:67813877 chr15:67813876 nonsynonymous SNV 0.948 0 20 hm7G_associated_SNPs_30234 0 0 1 0 1 C15orf61 chr15:67813932 5'GT 67813932 Upstream 57bp 27664 chr19 110702 110702 1 + G T LUAD 110703 + 110683 110723 41 TGACTGAATTCATTTTTCTGGGTCTCTCTGATTCTCAGGGA TGACTGAATTCATTTTTCTTGGTCTCTCTGATTCTCAGGGA < 41bp 0.401931056038111 0.708276953746082 NA NA prediction 0.416553907492165 Functional Gain - OR4F17 ENSG00000176695 CDS Human protein_coding chr19:110703 chr19:110702 synonymous SNV . 0 20 hm7G_associated_SNPs_30235 0 0 0 0 1 OR4F17 chr19:110625 3'AG 110625 Downstream 78bp 27665 chr5 36608664 36608664 1 + C T COAD 36608665 + 36608645 36608685 41 TGTTAAAAGTTACCTGTTTCGGAATGCTTTTGTGCTGCTCA TGTTAAAAGTTACCTGTTTTGGAATGCTTTTGTGCTGCTCA < 41bp 0.498273108407997 0.708276766963035 NA NA prediction 0.41655353392607 Functional Gain - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36608665 chr5:36608664 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30236 0 0 1 0 2 SLC1A3 chr5:36608687 5'GT 36608687 Upstream 24bp 27666 chr5 36608664 36608664 1 + C T COAD 36608665 + 36608645 36608685 41 TGTTAAAAGTTACCTGTTTCGGAATGCTTTTGTGCTGCTCA TGTTAAAAGTTACCTGTTTTGGAATGCTTTTGTGCTGCTCA < 41bp 0.498273108407997 0.708276766963035 NA NA prediction 0.41655353392607 Functional Gain - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36608665 chr5:36608664 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30236 0 0 1 0 2 SLC1A3 chr5:36608706 5'GT 36608706 Upstream 43bp 27667 chr19 7975984 7975984 1 + C T rs372642511 7975985 + 7975965 7976005 41 TCTGCGACTTCGGCATCAGCGGCCGCCTGGTGGACTCCAAA TCTGCGACTTCGGCATCAGTGGCCGCCTGGTGGACTCCAAA < 41bp 0.510259762396406 0.718536290832674 NA NA prediction 0.416553056872536 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975985 chr19:7975984 synonymous SNV . 0 20 hm7G_associated_SNPs_30237 0 0 1 0 1 MAP2K7 chr19:7976044 5'GT 7976044 Upstream 61bp 27668 chr3 14960337 14960337 1 + C T UCEC 14960338 + 14960318 14960358 41 TCCTGCCTGATGCTGTCTGCGAGGTACGGGCAGGTGGAGGG TCCTGCCTGATGCTGTCTGTGAGGTACGGGCAGGTGGAGGG < 41bp 0.513939392771589 0.722205489854425 NA NA prediction 0.416532194165673 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14960338 chr3:14960337 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_30239 0 0 0 0 2 FGD5 chr3:14960261 3'AG 14960261 Downstream 77bp 27669 chr3 14960337 14960337 1 + C T UCEC 14960338 + 14960318 14960358 41 TCCTGCCTGATGCTGTCTGCGAGGTACGGGCAGGTGGAGGG TCCTGCCTGATGCTGTCTGTGAGGTACGGGCAGGTGGAGGG < 41bp 0.513939392771589 0.722205489854425 NA NA prediction 0.416532194165673 Functional Gain - FGD5 ENSG00000154783 CDS Human protein_coding chr3:14960338 chr3:14960337 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_30239 0 0 0 0 2 FGD5 chr3:14960340 5'GT 14960340 Upstream 4bp 27670 chr11 15247245 15247245 1 + G T LIHC 15247246 + 15247226 15247266 41 TCTTCCTACTGGCCTCTGCGGCCCTTGCCAACATCACGTTC TCTTCCTACTGGCCTCTGCTGCCCTTGCCAACATCACGTTC < 41bp 0.353693562790069 0.708261701011867 NA NA prediction 0.416523402023735 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15247246 chr11:15247245 synonymous SNV . 0 20 hm7G_associated_SNPs_30243 0 0 0 0 1 INSC chr11:15247196 3'AG 15247196 Downstream 50bp 27671 chr17 1201590 1201590 1 + G A rs376735352 1201591 + 1201571 1201611 41 AGCTGGGCTAGCAGAGGCCGGCCCTGGCCATCGGGAGAGCT AGCTGGGCTAGCAGAGGCCAGCCCTGGCCATCGGGAGAGCT < 41bp 0.554964758060595 0.763223338374326 NA NA prediction 0.416517160627461 Functional Gain - TUSC5 ENSG00000184811 UTR3 Human protein_coding chr17:1201591 chr17:1201590 . . 0 20 hm7G_associated_SNPs_30246 0 0 0 0 1 TUSC5 chr17:1201545 3'AG 1201545 Downstream 46bp 27672 chr1 205211142 205211142 1 + G A rs1172142 205211143 + 205211123 205211163 41 GCAGCAACGTGTACCTCCTGGCTGAGGAGGCCGAAGGCATC GCAGCAACGTGTACCTCCTAGCTGAGGAGGCCGAAGGCATC < 41bp 0.553540413020149 0.761798729705974 NA NA prediction 0.41651663337165 Functional Gain - TMCC2 ENSG00000133069 CDS Human protein_coding chr1:205211143 chr1:205211142 synonymous SNV . 0 20 hm7G_associated_SNPs_30247 0 0 0 0 1 TMCC2 chr1:205211172 5'GT 205211172 Upstream 31bp 27673 chr11 12246348 12246348 1 + C T rs140261770 12246349 + 12246329 12246369 41 CCTGTGTGCCATCATCCACCGCTTCCGGCCTGAGCTCATGT CCTGTGTGCCATCATCCACTGCTTCCGGCCTGAGCTCATGT < 41bp 0.52271627837838 0.730972852778555 NA NA prediction 0.41651314880035 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12246349 chr11:12246348 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_30249 0 0 1 0 1 MICAL2 chr11:12246367 5'GT 12246367 Upstream 20bp 27674 chr17 80758854 80758854 1 + C T SKCM 80758855 + 80758835 80758875 41 GGGCTGACATTCCTGAAGCCGAAGGTGGCAGCATGGAGGTA GGGCTGACATTCCTGAAGCTGAAGGTGGCAGCATGGAGGTA < 41bp 0.496417221483471 0.708255799511158 NA NA prediction 0.416511599022316 Functional Gain - TBCD ENSG00000141556 CDS Human protein_coding chr17:80758855 chr17:80758854 nonsynonymous SNV 0.804 4 20 hm7G_associated_SNPs_30250 0 0 1 0 1 TBCD chr17:80758872 5'GT 80758872 Upstream 19bp 27675 chr9 19296091 19296091 1 + C T UCEC 19296092 + 19296072 19296112 41 ATGCACCTGGGCTTGTTGACGCCTGTGGAGAGAAAAATGGT ATGCACCTGGGCTTGTTGATGCCTGTGGAGAGAAAAATGGT < 41bp 0.50313637904515 0.711381775912163 NA NA prediction 0.416490793734026 Functional Gain - DENND4C ENSG00000137145 CDS Human protein_coding chr9:19296092 chr9:19296091 nonsynonymous SNV 0.282 2 20 hm7G_associated_SNPs_30251 0 0 1 0 1 DENND4C chr9:19296006 3'AG 19296006 Downstream 86bp 27676 chr1 207639892 207639892 1 + C T BLCA 207639893 + 207639873 207639913 41 ATTTCTTGTGGCTCTCCTCCGCCTATCCTAAATGGCCGGAT ATTTCTTGTGGCTCTCCTCTGCCTATCCTAAATGGCCGGAT < 41bp 0.50165742607423 0.709899818141579 NA NA prediction 0.416484784134697 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207639893 chr1:207639892 nonsynonymous SNV 0.482 3 20 hm7G_associated_SNPs_30252 0 0 0 0 1 CR2 chr1:207639871 3'AG 207639871 Downstream 22bp 27677 chr7 128356974 128356974 1 + G A COAD 128356975 + 128356955 128356995 41 TCCCCAACATCCTACTCATGGCCAGTGTCAAATGGCACCAG TCCCCAACATCCTACTCATAGCCAGTGTCAAATGGCACCAG < 41bp 0.514693853868939 0.722936075997905 NA NA prediction 0.416484444257931 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128356975 chr7:128356974 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_30253 0 0 0 2 1 FAM71F1 chr7:128357051 5'GT 128357051 Upstream 78bp 27678 chrX 144337285 144337285 1 + G T LGG 144337286 + 144337266 144337306 41 GTATTAGCGTTTTGCTACAGGAAAGCTAAGAAAATACATTC GTATTAGCGTTTTGCTACATGAAAGCTAAGAAAATACATTC < 41bp 0.41687545827798 0.708238700398704 NA NA prediction 0.416477400797408 Functional Gain - SPANXN1 ENSG00000203923 CDS Human protein_coding chrX:144337286 chrX:144337285 nonsynonymous SNV 0.005 2 20 hm7G_associated_SNPs_30254 0 0 0 0 1 SPANXN1 chrX:144337191 3'AG 144337191 Downstream 95bp 27679 chr19 54403682 54403682 1 + G A BRCA 54403683 + 54403663 54403703 41 CGTCCTCCAGGTTCTACGCGGCAGAAATCGCTATCGGCCTC CGTCCTCCAGGTTCTACGCAGCAGAAATCGCTATCGGCCTC < 41bp 0.521359355480189 0.72959771965528 NA NA prediction 0.416476728350183 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403683 chr19:54403682 synonymous SNV . 0 20 hm7G_associated_SNPs_30255 0 0 0 0 2 PRKCG chr19:54403673 3'AG 54403673 Downstream 10bp 27680 chr19 54403682 54403682 1 + G A BRCA 54403683 + 54403663 54403703 41 CGTCCTCCAGGTTCTACGCGGCAGAAATCGCTATCGGCCTC CGTCCTCCAGGTTCTACGCAGCAGAAATCGCTATCGGCCTC < 41bp 0.521359355480189 0.72959771965528 NA NA prediction 0.416476728350183 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403683 chr19:54403682 synonymous SNV . 0 20 hm7G_associated_SNPs_30255 0 0 0 0 2 PRKCG chr19:54403735 5'GT 54403735 Upstream 54bp 27681 chr14 65521330 65521330 1 + G A OV 65521331 + 65521311 65521351 41 CACCTGCTACTGCCTGAGCGGCCTGTCCATAGCCCAGCACT CACCTGCTACTGCCTGAGCAGCCTGTCCATAGCCCAGCACT < 41bp 0.513144019547711 0.7213817344322 NA NA prediction 0.416475429768977 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65521331 chr14:65521330 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_30256 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65521293 3'AG 65521293 Downstream 38bp 27682 chr14 65521330 65521330 1 + G A OV 65521331 + 65521311 65521351 41 CACCTGCTACTGCCTGAGCGGCCTGTCCATAGCCCAGCACT CACCTGCTACTGCCTGAGCAGCCTGTCCATAGCCCAGCACT < 41bp 0.513144019547711 0.7213817344322 NA NA prediction 0.416475429768977 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65521331 chr14:65521330 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_30256 0 0 1 0 2 CHURC1-FNTB;FNTB chr14:65521407 5'GT 65521407 Upstream 78bp 27683 chr16 68863673 68863673 1 + C T rs202075199 68863674 + 68863654 68863694 41 TTCCCCGCCCTGCCAATCCCGATGAAATTGGAAATTTTATT TTCCCCGCCCTGCCAATCCTGATGAAATTGGAAATTTTATT < 41bp 0.498554178991894 0.708237339240114 NA NA prediction 0.416474678480227 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68863674 chr16:68863673 synonymous SNV . 0 20 hm7G_associated_SNPs_30257 3 0 0 0 1 CDH1 chr16:68863700 5'GT 68863700 Upstream 28bp 27684 chr14 60582090 60582090 1 + C T COAD 60582091 + 60582071 60582111 41 TTCCGAAATCCCTTTTATCCGAAGGATGTGCAAACTGTGAC TTCCGAAATCCCTTTTATCTGAAGGATGTGCAAACTGTGAC < 41bp 0.520135374099611 0.728368138617013 NA NA prediction 0.416465529034804 Functional Gain - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60582091 chr14:60582090 nonsynonymous SNV 0.961 3 20 hm7G_associated_SNPs_30258 0 0 1 0 1 PCNX4 chr14:60582179 5'GT 60582179 Upstream 90bp 27685 chr17 48753032 48753032 1 + C T UCEC 48753033 + 48753013 48753053 41 AGATGGGGAGGGACAGGGTCGGCCTGTACCCCGGAGGCACC AGATGGGGAGGGACAGGGTTGGCCTGTACCCCGGAGGCACC < 41bp 0.494857636616055 0.708228460306662 NA NA prediction 0.416456920613325 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48753033 chr17:48753032 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30259 0 0 1 0 1 ABCC3 chr17:48752992 3'AG 48752992 Downstream 41bp 27686 chr21 45819235 45819235 1 + C T HNSC 45819236 + 45819216 45819256 41 AGCCCAGAAACTGCTCACCCGCGTGTCCGAGGCCTGGGGGA AGCCCAGAAACTGCTCACCTGCGTGTCCGAGGCCTGGGGGA < 41bp 0.512974430037434 0.721201411980212 NA NA prediction 0.416453963885556 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45819236 chr21:45819235 nonsynonymous SNV 0.007 3 20 hm7G_associated_SNPs_30260 0 0 0 0 2 TRPM2 chr21:45819179 3'AG 45819179 Downstream 57bp 27687 chr21 45819235 45819235 1 + C T HNSC 45819236 + 45819216 45819256 41 AGCCCAGAAACTGCTCACCCGCGTGTCCGAGGCCTGGGGGA AGCCCAGAAACTGCTCACCTGCGTGTCCGAGGCCTGGGGGA < 41bp 0.512974430037434 0.721201411980212 NA NA prediction 0.416453963885556 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45819236 chr21:45819235 nonsynonymous SNV 0.007 3 20 hm7G_associated_SNPs_30260 0 0 0 0 2 TRPM2 chr21:45819324 5'GT 45819324 Upstream 90bp 27688 chr4 6612878 6612878 1 + C T COAD 6612879 + 6612859 6612899 41 GCTACAACCTCACGCTGAACGACACCTCAGTCGTCCACCCA GCTACAACCTCACGCTGAATGACACCTCAGTCGTCCACCCA < 41bp 0.498988617919735 0.708226561847651 NA NA prediction 0.416453123695302 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6612879 chr4:6612878 synonymous SNV . 0 20 hm7G_associated_SNPs_30261 0 0 0 0 1 MAN2B2 chr4:6612813 3'AG 6612813 Downstream 66bp 27689 chr9 19336368 19336368 1 + C T UCEC 19336369 + 19336349 19336389 41 TTGGCACAGTTTAGGCAGCCGCTTAAAAAGACTGTGCAAAG TTGGCACAGTTTAGGCAGCTGCTTAAAAAGACTGTGCAAAG < 41bp 0.522626854001395 0.730851306394269 NA NA prediction 0.416448904785749 Functional Gain - DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336369 chr9:19336368 nonsynonymous SNV 0.426 1 20 hm7G_associated_SNPs_30263 0 0 1 0 1 DENND4C chr9:19336412 5'GT 19336412 Upstream 45bp 27690 chr1 46499540 46499540 1 + C T LUSC 46499541 + 46499521 46499561 41 CATTAAAGTGGGGCCAGCTCGGAAGGGCAGCTACAAGGCCA CATTAAAGTGGGGCCAGCTTGGAAGGGCAGCTACAAGGCCA < 41bp 0.520483572356046 0.728706252975673 NA NA prediction 0.416445361239254 Functional Gain - MAST2 ENSG00000086015 CDS Human protein_coding chr1:46499541 chr1:46499540 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_30264 0 0 1 0 1 MAST2 chr1:46499610 5'GT 46499610 Upstream 71bp 27691 chr7 144068293 144068293 1 + C T UCEC 144068294 + 144068274 144068314 41 GTCAGAGGCCTCCTACCTGCGCAGTCTAAACATAGCTGTGG GTCAGAGGCCTCCTACCTGTGCAGTCTAAACATAGCTGTGG < 41bp 0.502212360961717 0.71043145939386 NA NA prediction 0.416438196864287 Functional Gain - ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144068294 chr7:144068293 nonsynonymous SNV 0.793 4 20 hm7G_associated_SNPs_30265 0 0 0 0 1 ARHGEF5 chr7:144068254 3'AG 144068254 Downstream 40bp 27692 chr22 24584239 24584239 1 + G A LUSC 24584240 + 24584220 24584260 41 TCATCTTTGGGGGCCTCGCGGTGGTGGCGGCGGTTGCGCTC TCATCTTTGGGGGCCTCGCAGTGGTGGCGGCGGTTGCGCTC < 41bp 0.51973253607602 0.727949431445788 NA NA prediction 0.416433790739535 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24584240 chr22:24584239 synonymous SNV . 0 20 hm7G_associated_SNPs_30267 0 0 0 0 2 SUSD2 chr22:24584193 3'AG 24584193 Downstream 47bp 27693 chr22 24584239 24584239 1 + G A LUSC 24584240 + 24584220 24584260 41 TCATCTTTGGGGGCCTCGCGGTGGTGGCGGCGGTTGCGCTC TCATCTTTGGGGGCCTCGCAGTGGTGGCGGCGGTTGCGCTC < 41bp 0.51973253607602 0.727949431445788 NA NA prediction 0.416433790739535 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24584240 chr22:24584239 synonymous SNV . 0 20 hm7G_associated_SNPs_30267 0 0 0 0 2 SUSD2 chr22:24584295 5'GT 24584295 Upstream 57bp 27694 chr12 113533172 113533172 1 + G A SKCM 113533173 + 113533153 113533193 41 GAAGAAGTTCACCGCAAGAGGATTCCCTCGCCACTGCTATC GAAGAAGTTCACCGCAAGAAGATTCCCTCGCCACTGCTATC < 41bp 0.506697471640175 0.714912105736787 NA NA prediction 0.416429268193225 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113533173 chr12:113533172 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_30268 0 0 0 0 2 DTX1 chr12:113533130 3'AG 113533130 Downstream 43bp 27695 chr12 113533172 113533172 1 + G A SKCM 113533173 + 113533153 113533193 41 GAAGAAGTTCACCGCAAGAGGATTCCCTCGCCACTGCTATC GAAGAAGTTCACCGCAAGAAGATTCCCTCGCCACTGCTATC < 41bp 0.506697471640175 0.714912105736787 NA NA prediction 0.416429268193225 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113533173 chr12:113533172 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_30268 0 0 0 0 2 DTX1 chr12:113533219 5'GT 113533219 Upstream 48bp 27696 chr2 120397418 120397418 1 + C T COAD 120397419 + 120397399 120397439 41 CTGGTTCTCTCCTCCCTGCCGGACCCCTCCAAGATGGAGAC CTGGTTCTCTCCTCCCTGCTGGACCCCTCCAAGATGGAGAC < 41bp 0.491925763192924 0.708211650750169 NA NA prediction 0.416423301500338 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120397419 chr2:120397418 nonsynonymous SNV 0.018 0 20 hm7G_associated_SNPs_30270 0 0 0 0 2 CFAP221 chr2:120397357 3'AG 120397357 Downstream 62bp 27697 chr2 120397418 120397418 1 + C T COAD 120397419 + 120397399 120397439 41 CTGGTTCTCTCCTCCCTGCCGGACCCCTCCAAGATGGAGAC CTGGTTCTCTCCTCCCTGCTGGACCCCTCCAAGATGGAGAC < 41bp 0.491925763192924 0.708211650750169 NA NA prediction 0.416423301500338 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120397419 chr2:120397418 nonsynonymous SNV 0.018 0 20 hm7G_associated_SNPs_30270 0 0 0 0 2 CFAP221 chr2:120397448 5'GT 120397448 Upstream 31bp 27698 chr16 57155594 57155594 1 + C T CESC 57155595 + 57155575 57155615 41 GCGTTGCCCAGCTGGAGTTCGAGTGCATCAACCCCAAGAAG GCGTTGCCCAGCTGGAGTTTGAGTGCATCAACCCCAAGAAG < 41bp 0.531023487862835 0.739233931804713 NA NA prediction 0.416420887883756 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57155595 chr16:57155594 synonymous SNV . 0 20 hm7G_associated_SNPs_30271 0 0 1 0 2 CPNE2 chr16:57155586 3'AG 57155586 Downstream 9bp 27699 chr16 57155594 57155594 1 + C T CESC 57155595 + 57155575 57155615 41 GCGTTGCCCAGCTGGAGTTCGAGTGCATCAACCCCAAGAAG GCGTTGCCCAGCTGGAGTTTGAGTGCATCAACCCCAAGAAG < 41bp 0.531023487862835 0.739233931804713 NA NA prediction 0.416420887883756 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57155595 chr16:57155594 synonymous SNV . 0 20 hm7G_associated_SNPs_30271 0 0 1 0 2 CPNE2 chr16:57155672 5'GT 57155672 Upstream 79bp 27700 chr3 140997196 140997196 1 + C T LUAD 140997197 + 140997177 140997217 41 GTTTCAGTCCACCTGATCCCGGTGTCGACTCCTAAGAATGG GTTTCAGTCCACCTGATCCTGGTGTCGACTCCTAAGAATGG < 41bp 0.516795892832692 0.725005952431018 NA NA prediction 0.416420119196651 Functional Gain - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:140997197 chr3:140997196 nonsynonymous SNV 0.891 4 20 hm7G_associated_SNPs_30272 0 0 1 0 1 PXYLP1 chr3:140997184 3'AG 140997184 Downstream 13bp 27701 chr7 75583370 75583370 1 + C T SKCM 75583371 + 75583351 75583391 41 CCGTGTCCGAGGCGGTGGCCGAAGAAGTATCTCTTTTCAGC CCGTGTCCGAGGCGGTGGCTGAAGAAGTATCTCTTTTCAGC < 41bp 0.523214599601606 0.731424654929391 NA NA prediction 0.416420110655571 Functional Gain - POR ENSG00000127948 CDS Human protein_coding chr7:75583371 chr7:75583370 synonymous SNV . 0 20 hm7G_associated_SNPs_30273 0 0 1 0 1 POR chr7:75583307 3'AG 75583307 Downstream 64bp 27702 chr10 121691671 121691671 1 + G T LUAD 121691672 + 121691652 121691692 41 AGAGAGTCTCTCTCGTATGGGATCTGATTTGAAGCAGGGTT AGAGAGTCTCTCTCGTATGTGATCTGATTTGAAGCAGGGTT < 41bp 0.379768869716876 0.708206341267718 NA NA prediction 0.416412682535436 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121691672 chr10:121691671 stopgain 1.000 1 20 hm7G_associated_SNPs_30275 0 0 1 3 1 SEC23IP chr10:121691645 3'AG 121691645 Downstream 27bp 27703 chr14 24633164 24633164 1 + G T LGG 24633165 + 24633145 24633185 41 GCAGCAGCCCTGAGCCACAGGAAGGTACCACCTGCCCTGCC GCAGCAGCCCTGAGCCACATGAAGGTACCACCTGCCCTGCC < 41bp 0.361154611198459 0.708203304942515 NA NA prediction 0.41640660988503 Functional Gain - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24633165 chr14:24633164 nonsynonymous SNV 0.653 1 20 hm7G_associated_SNPs_30278 0 0 0 0 2 IRF9 chr14:24633087 3'AG 24633087 Downstream 78bp 27704 chr14 24633164 24633164 1 + G T LGG 24633165 + 24633145 24633185 41 GCAGCAGCCCTGAGCCACAGGAAGGTACCACCTGCCCTGCC GCAGCAGCCCTGAGCCACATGAAGGTACCACCTGCCCTGCC < 41bp 0.361154611198459 0.708203304942515 NA NA prediction 0.41640660988503 Functional Gain - IRF9 ENSG00000213928 CDS Human protein_coding chr14:24633165 chr14:24633164 nonsynonymous SNV 0.653 1 20 hm7G_associated_SNPs_30278 0 0 0 0 2 IRF9 chr14:24633168 5'GT 24633168 Upstream 5bp 27705 chr5 156736774 156736774 1 + C T UCEC 156736775 + 156736755 156736795 41 TGCAGGTGGTGCCCCTTTTCGGCGACATGCAGATAGAGCTG TGCAGGTGGTGCCCCTTTTTGGCGACATGCAGATAGAGCTG < 41bp 0.504307694365869 0.712509008030418 NA NA prediction 0.416402627329099 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156736775 chr5:156736774 synonymous SNV . 0 20 hm7G_associated_SNPs_30280 0 0 1 0 2 CYFIP2 chr5:156736751 3'AG 156736751 Downstream 24bp 27706 chr5 156736774 156736774 1 + C T UCEC 156736775 + 156736755 156736795 41 TGCAGGTGGTGCCCCTTTTCGGCGACATGCAGATAGAGCTG TGCAGGTGGTGCCCCTTTTTGGCGACATGCAGATAGAGCTG < 41bp 0.504307694365869 0.712509008030418 NA NA prediction 0.416402627329099 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156736775 chr5:156736774 synonymous SNV . 0 20 hm7G_associated_SNPs_30280 0 0 1 0 2 CYFIP2 chr5:156736842 5'GT 156736842 Upstream 69bp 27707 chr14 23235881 23235881 1 + G A SKCM 23235882 + 23235862 23235902 41 TTGTGGTTCTTACTGCGCAGGCGCAAAAGCAAGTCCTCTTC TTGTGGTTCTTACTGCGCAAGCGCAAAAGCAAGTCCTCTTC < 41bp 0.510511305007007 0.718712436154655 NA NA prediction 0.416402262295297 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23235882 chr14:23235881 nonsynonymous SNV 0.063 0 20 hm7G_associated_SNPs_30281 0 0 0 1 1 OXA1L chr14:23235973 5'GT 23235973 Upstream 93bp 27708 chr3 184106382 184106382 1 + G A GBM 184106383 + 184106363 184106403 41 CCCTCTCAACAGTGGGGTCGGGGGCCCACCCCCAGCTGGGG CCCTCTCAACAGTGGGGTCAGGGGCCCACCCCCAGCTGGGG < 41bp 0.553122062563812 0.761323163832636 NA NA prediction 0.416402202537648 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184106383 chr3:184106382 synonymous SNV . 0 20 hm7G_associated_SNPs_30282 0 0 1 0 1 CHRD chr3:184106375 3'AG 184106375 Downstream 8bp 27709 chr4 8605802 8605802 1 + G T LUAD 8605803 + 8605783 8605823 41 ATGGTGCGTGTGCTGAGGCGGACGGCCTCCCGCTGCGCCCA ATGGTGCGTGTGCTGAGGCTGACGGCCTCCCGCTGCGCCCA < 41bp 0.358781795717152 0.708199723654645 NA NA prediction 0.41639944730929 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8605803 chr4:8605802 nonsynonymous SNV 0.248 0 20 hm7G_associated_SNPs_30283 0 0 1 0 1 CPZ chr4:8605703 3'AG 8605703 Downstream 100bp 27710 chr12 133102361 133102361 1 + C T CESC 133102362 + 133102342 133102382 41 GGGGCGACCGGGACAGTGACGACGACAGCGTCCTCGAAGCC GGGGCGACCGGGACAGTGATGACGACAGCGTCCTCGAAGCC < 41bp 0.496120158927365 0.708199076025032 NA NA prediction 0.416398152050065 Functional Gain - FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133102362 chr12:133102361 synonymous SNV . 0 20 hm7G_associated_SNPs_30285 0 0 1 0 2 FBRSL1 chr12:133102320 3'AG 133102320 Downstream 42bp 27711 chr12 133102361 133102361 1 + C T CESC 133102362 + 133102342 133102382 41 GGGGCGACCGGGACAGTGACGACGACAGCGTCCTCGAAGCC GGGGCGACCGGGACAGTGATGACGACAGCGTCCTCGAAGCC < 41bp 0.496120158927365 0.708199076025032 NA NA prediction 0.416398152050065 Functional Gain - FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133102362 chr12:133102361 synonymous SNV . 0 20 hm7G_associated_SNPs_30285 0 0 1 0 2 FBRSL1 chr12:133102409 5'GT 133102409 Upstream 49bp 27712 chr1 220279318 220279318 1 + G T HNSC 220279319 + 220279299 220279339 41 CTGCAAATCATGTGACCATGGCAAAAGGAACGGGATTGGTT CTGCAAATCATGTGACCATTGCAAAAGGAACGGGATTGGTT < 41bp 0.698091244481404 0.906289200882427 NA NA prediction 0.416395912802045 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279319 chr1:220279318 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_30286 0 0 1 0 2 IARS2 chr1:220279233 3'AG 220279233 Downstream 86bp 27713 chr1 220279318 220279318 1 + G T HNSC 220279319 + 220279299 220279339 41 CTGCAAATCATGTGACCATGGCAAAAGGAACGGGATTGGTT CTGCAAATCATGTGACCATTGCAAAAGGAACGGGATTGGTT < 41bp 0.698091244481404 0.906289200882427 NA NA prediction 0.416395912802045 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279319 chr1:220279318 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_30286 0 0 1 0 2 IARS2 chr1:220279402 5'GT 220279402 Upstream 85bp 27714 chr13 102231711 102231711 1 + C T rs34438356 102231712 + 102231692 102231732 41 ATAAATGTGAATTCCAGTGCGATATCACCCCCTGGGAAAGC ATAAATGTGAATTCCAGTGTGATATCACCCCCTGGGAAAGC < 41bp 0.526609148472297 0.734806491968339 NA NA prediction 0.416394686992086 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102231712 chr13:102231711 synonymous SNV . 0 20 hm7G_associated_SNPs_30287 0 0 0 0 2 ITGBL1 chr13:102231638 3'AG 102231638 Downstream 74bp 27715 chr13 102231711 102231711 1 + C T rs34438356 102231712 + 102231692 102231732 41 ATAAATGTGAATTCCAGTGCGATATCACCCCCTGGGAAAGC ATAAATGTGAATTCCAGTGTGATATCACCCCCTGGGAAAGC < 41bp 0.526609148472297 0.734806491968339 NA NA prediction 0.416394686992086 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102231712 chr13:102231711 synonymous SNV . 0 20 hm7G_associated_SNPs_30287 0 0 0 0 2 ITGBL1 chr13:102231778 5'GT 102231778 Upstream 68bp 27716 chr19 45377710 45377710 1 + C T SARC 45377711 + 45377691 45377731 41 ATGCCGTGGGCATGGGCCGCGCTGAGCAGGTCATCTTTGTC ATGCCGTGGGCATGGGCCGTGCTGAGCAGGTCATCTTTGTC < 41bp 0.510474101619046 0.718669527638364 NA NA prediction 0.416390852038636 Functional Gain - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45377711 chr19:45377710 synonymous SNV . 0 20 hm7G_associated_SNPs_30288 0 0 1 0 1 NECTIN2 chr19:45377735 5'GT 45377735 Upstream 26bp 27717 chr6 170639604 170639604 1 + G A UCEC 170639605 + 170639585 170639625 41 GGAACCCACTGAGGCACCCGGACCTCGTCAGGCCGCTGCAG GGAACCCACTGAGGCACCCAGACCTCGTCAGGCCGCTGCAG < 41bp 0.517529603894847 0.725722371455717 NA NA prediction 0.416385535121739 Functional Gain - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170639605 chr6:170639604 synonymous SNV . 0 20 hm7G_associated_SNPs_30290 0 0 1 0 2 FAM120B chr6:170639537 3'AG 170639537 Downstream 68bp 27718 chr6 170639604 170639604 1 + G A UCEC 170639605 + 170639585 170639625 41 GGAACCCACTGAGGCACCCGGACCTCGTCAGGCCGCTGCAG GGAACCCACTGAGGCACCCAGACCTCGTCAGGCCGCTGCAG < 41bp 0.517529603894847 0.725722371455717 NA NA prediction 0.416385535121739 Functional Gain - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170639605 chr6:170639604 synonymous SNV . 0 20 hm7G_associated_SNPs_30290 0 0 1 0 2 FAM120B chr6:170639638 5'GT 170639638 Upstream 35bp 27719 chr3 52246385 52246385 1 + C T PRAD 52246386 + 52246366 52246406 41 CCGGGGAGAAGAGCTCCTACGGATTGCCCCCACCCCTCACC CCGGGGAGAAGAGCTCCTATGGATTGCCCCCACCCCTCACC < 41bp 0.532062350959714 0.74025397517351 NA NA prediction 0.416383248427593 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52246386 chr3:52246385 nonsynonymous SNV 0.829 5 20 hm7G_associated_SNPs_30293 0 0 1 0 1 ALAS1 chr3:52246436 5'GT 52246436 Upstream 52bp 27720 chr6 39836610 39836610 1 + C T rs34941067 39836611 + 39836591 39836631 41 CCACCTAGACCCTGCTGAACGAGCTAGACCGAAGTCTGGGC CCACCTAGACCCTGCTGAATGAGCTAGACCGAAGTCTGGGC < 41bp 0.510839547322066 0.719030570952186 NA NA prediction 0.416382047260241 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39836611 chr6:39836610 synonymous SNV . 0 20 hm7G_associated_SNPs_30294 0 0 0 0 2 DAAM2 chr6:39836599 3'AG 39836599 Downstream 12bp 27721 chr6 39836610 39836610 1 + C T rs34941067 39836611 + 39836591 39836631 41 CCACCTAGACCCTGCTGAACGAGCTAGACCGAAGTCTGGGC CCACCTAGACCCTGCTGAATGAGCTAGACCGAAGTCTGGGC < 41bp 0.510839547322066 0.719030570952186 NA NA prediction 0.416382047260241 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39836611 chr6:39836610 synonymous SNV . 0 20 hm7G_associated_SNPs_30294 0 0 0 0 2 DAAM2 chr6:39836709 5'GT 39836709 Upstream 100bp 27722 chr15 74573063 74573063 1 + C T STAD 74573064 + 74573044 74573084 41 CTGGGCATCTCTGTGTTGCCGCTAAAGAGCCGTTTGTACCA CTGGGCATCTCTGTGTTGCTGCTAAAGAGCCGTTTGTACCA < 41bp 0.508139683128633 0.716330439614432 NA NA prediction 0.416381512971599 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74573064 chr15:74573063 nonsynonymous SNV 0.012 2 20 hm7G_associated_SNPs_30295 0 0 0 0 2 CCDC33 chr15:74573009 3'AG 74573009 Downstream 55bp 27723 chr15 74573063 74573063 1 + C T STAD 74573064 + 74573044 74573084 41 CTGGGCATCTCTGTGTTGCCGCTAAAGAGCCGTTTGTACCA CTGGGCATCTCTGTGTTGCTGCTAAAGAGCCGTTTGTACCA < 41bp 0.508139683128633 0.716330439614432 NA NA prediction 0.416381512971599 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74573064 chr15:74573063 nonsynonymous SNV 0.012 2 20 hm7G_associated_SNPs_30295 0 0 0 0 2 CCDC33 chr15:74573142 5'GT 74573142 Upstream 80bp 27724 chr7 30951659 30951659 1 + G A KICH 30951660 + 30951640 30951680 41 TGGGGAACAACCAGACGGCGGTCCAGGACAACGTGAAGGTG TGGGGAACAACCAGACGGCAGTCCAGGACAACGTGAAGGTG < 41bp 0.561039360855166 0.769229629346395 NA NA prediction 0.416380536982459 Functional Gain - AQP1 ENSG00000240583;ENSG00000250424 CDS Human other chr7:30951660 chr7:30951659 synonymous SNV . 0 20 hm7G_associated_SNPs_30297 0 0 1 0 1 AQP1 chr7:30951608 3'AG 30951608 Downstream 52bp 27725 chr17 4498466 4498466 1 + C T HNSC 4498467 + 4498447 4498487 41 CTGGTGACACCACCCCAGTCGCCCGTGTCCCCGCAGCCGCC CTGGTGACACCACCCCAGTTGCCCGTGTCCCCGCAGCCGCC < 41bp 0.498542430906622 0.708187363496465 NA NA prediction 0.41637472699293 Functional Gain - SMTNL2 ENSG00000188176 CDS Human protein_coding chr17:4498467 chr17:4498466 nonsynonymous SNV 0.412 2 20 hm7G_associated_SNPs_30299 0 0 0 0 1 SMTNL2 chr17:4498440 3'AG 4498440 Downstream 27bp 27726 chr2 153484859 153484859 1 + C T STAD 153484860 + 153484840 153484880 41 CTTTGTGGAATGCTTGATGCGGTTCCTACCAACTGAGAATG CTTTGTGGAATGCTTGATGTGGTTCCTACCAACTGAGAATG < 41bp 0.517447456583126 0.725634809637542 NA NA prediction 0.416374706108832 Functional Gain - FMNL2 ENSG00000157827 CDS Human protein_coding chr2:153484860 chr2:153484859 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_30300 0 0 1 0 1 FMNL2 chr2:153484813 3'AG 153484813 Downstream 47bp 27727 chr17 7400743 7400743 1 + C T rs141648112 7400744 + 7400724 7400764 41 TGCGGCGCAATGAGCAGAACGGCGCAGCGGCCCATGTCATT TGCGGCGCAATGAGCAGAATGGCGCAGCGGCCCATGTCATT < 41bp 0.507780907954742 0.715967956879439 NA NA prediction 0.416374097849396 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7400744 chr17:7400743 synonymous SNV . 0 20 hm7G_associated_SNPs_30301 0 0 1 0 2 POLR2A chr17:7400675 3'AG 7400675 Downstream 69bp 27728 chr17 7400743 7400743 1 + C T rs141648112 7400744 + 7400724 7400764 41 TGCGGCGCAATGAGCAGAACGGCGCAGCGGCCCATGTCATT TGCGGCGCAATGAGCAGAATGGCGCAGCGGCCCATGTCATT < 41bp 0.507780907954742 0.715967956879439 NA NA prediction 0.416374097849396 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7400744 chr17:7400743 synonymous SNV . 0 20 hm7G_associated_SNPs_30301 0 0 1 0 2 POLR2A chr17:7400836 5'GT 7400836 Upstream 94bp 27729 chr15 89386649 89386649 1 + G A LUAD 89386650 + 89386630 89386670 41 GAAGCAGCCAATGAGTGCCGGCGGCTGGGTGCCCGGCTGGC GAAGCAGCCAATGAGTGCCAGCGGCTGGGTGCCCGGCTGGC < 41bp 0.486917948677531 0.708187025555924 NA NA prediction 0.416374051111849 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89386650 chr15:89386649 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_30302 0 0 0 0 1 ACAN chr15:89386586 3'AG 89386586 Downstream 64bp 27730 chr19 49652374 49652374 1 + C T CESC 49652375 + 49652355 49652395 41 TCGCCCTGGACGAGACCTTCGACTACTCCGACCTGGCCTTG TCGCCCTGGACGAGACCTTTGACTACTCCGACCTGGCCTTG < 41bp 0.512822563111759 0.721006649212021 NA NA prediction 0.416368172200524 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49652375 chr19:49652374 synonymous SNV . 0 20 hm7G_associated_SNPs_30303 0 0 0 0 1 PPFIA3 chr19:49652425 5'GT 49652425 Upstream 52bp 27731 chr7 95442583 95442583 1 + C T GBM 95442584 + 95442564 95442604 41 ACCCCTATGTCTCCCTCCTCGAAATCAGTGAGCACTCCCAG ACCCCTATGTCTCCCTCCTTGAAATCAGTGAGCACTCCCAG < 41bp 0.511545432610116 0.719728069340274 NA NA prediction 0.416365273460316 Functional Gain - DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95442584 chr7:95442583 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30304 0 0 0 0 3 DYNC1I1 chr7:95442508 3'AG 95442508 Downstream 76bp 27732 chr7 95442583 95442583 1 + C T GBM 95442584 + 95442564 95442604 41 ACCCCTATGTCTCCCTCCTCGAAATCAGTGAGCACTCCCAG ACCCCTATGTCTCCCTCCTTGAAATCAGTGAGCACTCCCAG < 41bp 0.511545432610116 0.719728069340274 NA NA prediction 0.416365273460316 Functional Gain - DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95442584 chr7:95442583 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30304 0 0 0 0 3 DYNC1I1 chr7:95442559 3'AG 95442559 Downstream 25bp 27733 chr7 95442583 95442583 1 + C T GBM 95442584 + 95442564 95442604 41 ACCCCTATGTCTCCCTCCTCGAAATCAGTGAGCACTCCCAG ACCCCTATGTCTCCCTCCTTGAAATCAGTGAGCACTCCCAG < 41bp 0.511545432610116 0.719728069340274 NA NA prediction 0.416365273460316 Functional Gain - DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95442584 chr7:95442583 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30304 0 0 0 0 3 DYNC1I1 chr7:95442649 5'GT 95442649 Upstream 67bp 27734 chr11 71169475 71169475 1 + G A rs150737265 71169476 + 71169456 71169496 41 TTCTCACTGTCTCTGCAGCGGCTACGGATGTTGGGATCATT TTCTCACTGTCTCTGCAGCAGCTACGGATGTTGGGATCATT < 41bp 0.498736399028904 0.708181934784732 NA NA prediction 0.416363869569463 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71169476 chr11:71169475 nonsynonymous SNV 0.919 5 20 hm7G_associated_SNPs_30305 0 0 1 0 1 NADSYN1 chr11:71169474 3'AG 71169474 Downstream 2bp 27735 chr11 67816662 67816662 1 + G A SKCM 67816663 + 67816643 67816683 41 ACAAGTGGCTGTGTGTCTGGGCTGCCAGGGCCGCCTCGGCC ACAAGTGGCTGTGTGTCTGAGCTGCCAGGGCCGCCTCGGCC < 41bp 0.563183829441801 0.771364171693094 NA NA prediction 0.416360684502586 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67816663 chr11:67816662 stopgain 0.000 0 20 hm7G_associated_SNPs_30307 0 0 1 0 1 TCIRG1 chr11:67816761 5'GT 67816761 Upstream 100bp 27736 chr2 203149196 203149196 1 + G T LUAD 203149197 + 203149177 203149217 41 CAGCTATGTGTCTTGGATTGGCTCACAGGTGAGAATTACTG CAGCTATGTGTCTTGGATTTGCTCACAGGTGAGAATTACTG < 41bp 0.690154160230022 0.898328758496759 NA NA prediction 0.416349196533474 Functional Gain - NOP58 ENSG00000055044 CDS Human protein_coding chr2:203149197 chr2:203149196 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30310 0 0 1 0 1 NOP58 chr2:203149204 5'GT 203149204 Upstream 9bp 27737 chr9 117052366 117052366 1 + G A SKCM 117052367 + 117052347 117052387 41 GGAAAGCAAGGCAAGGCAGGGGCCCCAGGCCGGAGGGGGGT GGAAAGCAAGGCAAGGCAGAGGCCCCAGGCCGGAGGGGGGT < 41bp 0.517821254580235 0.725993147283875 NA NA prediction 0.41634378540728 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117052367 chr9:117052366 nonsynonymous SNV 0.465 4 20 hm7G_associated_SNPs_30312 0 0 1 0 2 COL27A1 chr9:117052338 3'AG 117052338 Downstream 29bp 27738 chr9 117052366 117052366 1 + G A SKCM 117052367 + 117052347 117052387 41 GGAAAGCAAGGCAAGGCAGGGGCCCCAGGCCGGAGGGGGGT GGAAAGCAAGGCAAGGCAGAGGCCCCAGGCCGGAGGGGGGT < 41bp 0.517821254580235 0.725993147283875 NA NA prediction 0.41634378540728 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117052367 chr9:117052366 nonsynonymous SNV 0.465 4 20 hm7G_associated_SNPs_30312 0 0 1 0 2 COL27A1 chr9:117052391 5'GT 117052391 Upstream 26bp 27739 chr1 204093838 204093838 1 + G A ESCA 204093839 + 204093819 204093859 41 GAACAGGCGCGGCTGAGCCGGCAGCACCTGGAGAAGTATCC GAACAGGCGCGGCTGAGCCAGCAGCACCTGGAGAAGTATCC < 41bp 0.519595891991982 0.727766044277781 NA NA prediction 0.416340304571598 Functional Gain - SOX13 ENSG00000143842 CDS Human protein_coding chr1:204093839 chr1:204093838 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_30313 0 0 0 0 1 SOX13 chr1:204093769 3'AG 204093769 Downstream 70bp 27740 chr12 31136068 31136068 1 + G A BRCA 31136069 + 31136049 31136089 41 TATGGGGGCAGTGGGCATCGGGGTGGCCTGCCTGCAGGTGA TATGGGGGCAGTGGGCATCAGGGTGGCCTGCCTGCAGGTGA < 41bp 0.515906175914285 0.724075093309157 NA NA prediction 0.416337834789744 Functional Gain - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31136069 chr12:31136068 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_30315 0 0 0 0 2 TSPAN11 chr12:31135999 3'AG 31135999 Downstream 70bp 27741 chr12 31136068 31136068 1 + G A BRCA 31136069 + 31136049 31136089 41 TATGGGGGCAGTGGGCATCGGGGTGGCCTGCCTGCAGGTGA TATGGGGGCAGTGGGCATCAGGGTGGCCTGCCTGCAGGTGA < 41bp 0.515906175914285 0.724075093309157 NA NA prediction 0.416337834789744 Functional Gain - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31136069 chr12:31136068 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_30315 0 0 0 0 2 TSPAN11 chr12:31136085 5'GT 31136085 Upstream 18bp 27742 chr12 109698378 109698378 1 + C T OV 109698379 + 109698359 109698399 41 ATCTATATCCCGCCCTATGCGGAGCTCCGGGGAGGCTCCTG ATCTATATCCCGCCCTATGTGGAGCTCCGGGGAGGCTCCTG < 41bp 0.502701629616032 0.710869111132385 NA NA prediction 0.416334963032708 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109698379 chr12:109698378 nonsynonymous SNV 0.760 3 20 hm7G_associated_SNPs_30316 0 0 0 0 2 ACACB chr12:109698285 3'AG 109698285 Downstream 94bp 27743 chr12 109698378 109698378 1 + C T OV 109698379 + 109698359 109698399 41 ATCTATATCCCGCCCTATGCGGAGCTCCGGGGAGGCTCCTG ATCTATATCCCGCCCTATGTGGAGCTCCGGGGAGGCTCCTG < 41bp 0.502701629616032 0.710869111132385 NA NA prediction 0.416334963032708 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109698379 chr12:109698378 nonsynonymous SNV 0.760 3 20 hm7G_associated_SNPs_30316 0 0 0 0 2 ACACB chr12:109698462 5'GT 109698462 Upstream 85bp 27744 chr1 206651575 206651575 1 + C T UCEC 206651576 + 206651556 206651596 41 AGGCCAAGTGCTGGGGCTTCGACCAGTTCTTTGCGGAGACC AGGCCAAGTGCTGGGGCTTTGACCAGTTCTTTGCGGAGACC < 41bp 0.534954822093832 0.743120942518018 NA NA prediction 0.416332240848372 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206651576 chr1:206651575 synonymous SNV . 0 20 hm7G_associated_SNPs_30317 0 0 0 0 1 IKBKE chr1:206651503 3'AG 206651503 Downstream 73bp 27745 chr8 70501310 70501310 1 + C T STAD 70501311 + 70501291 70501331 41 ATGGTGATCAGCCACGCTGCGCCCCACGGCCCCGAGGACTC ATGGTGATCAGCCACGCTGTGCCCCACGGCCCCGAGGACTC < 41bp 0.50721492208934 0.71537698497565 NA NA prediction 0.416324125772619 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70501311 chr8:70501310 nonsynonymous SNV 0.263 4 20 hm7G_associated_SNPs_30318 0 0 0 0 1 SULF1 chr8:70501376 5'GT 70501376 Upstream 67bp 27746 chr11 33640205 33640205 1 + C T COAD 33640206 + 33640186 33640226 41 GAATCCGCAACAGCGGATACGATGTGAGTCTCTGGTGGGCT GAATCCGCAACAGCGGATATGATGTGAGTCTCTGGTGGGCT < 41bp 0.510144255358509 0.718305746498739 NA NA prediction 0.416322982280461 Functional Gain - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33640206 chr11:33640205 synonymous SNV . 0 20 hm7G_associated_SNPs_30319 0 0 0 0 1 KIAA1549L chr11:33640208 5'GT 33640208 Upstream 4bp 27747 chr18 29111129 29111129 1 + C T UCEC 29111130 + 29111110 29111150 41 TCATCTCAATTTATGTTAGCGAGAGCATGGATAGATCAAGC TCATCTCAATTTATGTTAGTGAGAGCATGGATAGATCAAGC < 41bp 0.506407454134914 0.714568567568485 NA NA prediction 0.416322226867143 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29111130 chr18:29111129 synonymous SNV . 0 20 hm7G_associated_SNPs_30320 0 0 1 0 1 DSG2 chr18:29111215 5'GT 29111215 Upstream 87bp 27748 chr12 65222252 65222252 1 + G A UCEC 65222253 + 65222233 65222273 41 GCTCTCAAGGCAGTTGCCAGGCTATCCACAGGAATACCAAA GCTCTCAAGGCAGTTGCCAAGCTATCCACAGGAATACCAAA < 41bp 0.511247038779643 0.71940577402284 NA NA prediction 0.416317470486392 Functional Gain - TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65222253 chr12:65222252 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_30322 0 0 0 0 2 TBC1D30 chr12:65222224 3'AG 65222224 Downstream 29bp 27749 chr12 65222252 65222252 1 + G A UCEC 65222253 + 65222233 65222273 41 GCTCTCAAGGCAGTTGCCAGGCTATCCACAGGAATACCAAA GCTCTCAAGGCAGTTGCCAAGCTATCCACAGGAATACCAAA < 41bp 0.511247038779643 0.71940577402284 NA NA prediction 0.416317470486392 Functional Gain - TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65222253 chr12:65222252 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_30322 0 0 0 0 2 TBC1D30 chr12:65222289 5'GT 65222289 Upstream 38bp 27750 chr7 150840832 150840832 1 + G T LUSC 150840833 + 150840813 150840853 41 TTCTCCTACAGTACGGGGTGGACGTGAGGAGCCGGGACGCC TTCTCCTACAGTACGGGGTTGACGTGAGGAGCCGGGACGCC < 41bp 0.689322181038976 0.897475135761233 NA NA prediction 0.416305909444514 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150840833 chr7:150840832 synonymous SNV . 0 20 hm7G_associated_SNPs_30325 0 0 1 0 1 AGAP3 chr7:150840824 3'AG 150840824 Downstream 9bp 27751 chr5 7883344 7883344 1 + C T rs79430644 7883345 + 7883325 7883365 41 AAGGCAGTTCAACTTACTACGAATGATGCCATAAAAACCAC AAGGCAGTTCAACTTACTATGAATGATGCCATAAAAACCAC < 41bp 0.498554618455132 0.708152862015729 NA NA prediction 0.416305724031459 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7883345 chr5:7883344 nonsynonymous SNV 0.770 0 20 hm7G_associated_SNPs_30326 0 0 1 1 2 MTRR chr5:7883268 3'AG 7883268 Downstream 77bp 27752 chr5 7883344 7883344 1 + C T rs79430644 7883345 + 7883325 7883365 41 AAGGCAGTTCAACTTACTACGAATGATGCCATAAAAACCAC AAGGCAGTTCAACTTACTATGAATGATGCCATAAAAACCAC < 41bp 0.498554618455132 0.708152862015729 NA NA prediction 0.416305724031459 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7883345 chr5:7883344 nonsynonymous SNV 0.770 0 20 hm7G_associated_SNPs_30326 0 0 1 1 2 MTRR chr5:7883390 5'GT 7883390 Upstream 47bp 27753 chr11 64893024 64893024 1 + G A rs34535921 64893025 + 64893005 64893045 41 ACAACATCCCCGTCTACAAGGACATCACGCATGGCAACCGG ACAACATCCCCGTCTACAAAGACATCACGCATGGCAACCGG < 41bp 0.503305737810622 0.711457739437222 NA NA prediction 0.416304003253199 Functional Gain - MRPL49 ENSG00000149792 CDS Human protein_coding chr11:64893025 chr11:64893024 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_30327 0 0 1 0 2 MRPL49 chr11:64892960 3'AG 64892960 Downstream 65bp 27754 chr11 64893024 64893024 1 + G A rs34535921 64893025 + 64893005 64893045 41 ACAACATCCCCGTCTACAAGGACATCACGCATGGCAACCGG ACAACATCCCCGTCTACAAAGACATCACGCATGGCAACCGG < 41bp 0.503305737810622 0.711457739437222 NA NA prediction 0.416304003253199 Functional Gain - MRPL49 ENSG00000149792 CDS Human protein_coding chr11:64893025 chr11:64893024 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_30327 0 0 1 0 2 MRPL49 chr11:64893084 5'GT 64893084 Upstream 61bp 27755 chr5 5235263 5235263 1 + C T STAD 5235264 + 5235244 5235284 41 CAGCAGACGATTCAGAGGGCGGCACTACAAGTGGAAGCCTT CAGCAGACGATTCAGAGGGTGGCACTACAAGTGGAAGCCTT < 41bp 0.551401289402635 0.759550304198931 NA NA prediction 0.416298029592591 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5235264 chr5:5235263 nonsynonymous SNV 0.127 0 20 hm7G_associated_SNPs_30328 0 0 0 0 1 ADAMTS16 chr5:5235299 5'GT 5235299 Upstream 37bp 27756 chr11 62549438 62549438 1 + G T LGG 62549439 + 62549419 62549459 41 CTTTGTTTATGTGGTCAGTGGGGTAAGTGACCAGGCTGGGA CTTTGTTTATGTGGTCAGTTGGGTAAGTGACCAGGCTGGGA < 41bp 0.701029399919489 0.909177701501827 NA NA prediction 0.416296603164676 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62549439 chr11:62549438 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30329 0 0 1 0 2 TAF6L chr11:62549366 3'AG 62549366 Downstream 73bp 27757 chr11 62549438 62549438 1 + G T LGG 62549439 + 62549419 62549459 41 CTTTGTTTATGTGGTCAGTGGGGTAAGTGACCAGGCTGGGA CTTTGTTTATGTGGTCAGTTGGGTAAGTGACCAGGCTGGGA < 41bp 0.701029399919489 0.909177701501827 NA NA prediction 0.416296603164676 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62549439 chr11:62549438 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30329 0 0 1 0 2 TAF6L chr11:62549440 5'GT 62549440 Upstream 3bp 27758 chr7 128845123 128845123 1 + G T THYM 128845124 + 128845104 128845144 41 ACAGACAACCCCAAGAGCTGGTACGAGGACGTGGAGGGCTG ACAGACAACCCCAAGAGCTTGTACGAGGACGTGGAGGGCTG < 41bp 0.703962177693758 0.912109882788457 NA NA prediction 0.416295410189397 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128845124 chr7:128845123 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30330 0 0 1 0 1 SMO chr7:128845044 3'AG 128845044 Downstream 80bp 27759 chr10 43615054 43615054 1 + G A SKCM 43615055 + 43615035 43615075 41 CGCGAGAGCCGCAAAGTGGGGCCTGGCTACCTGGGCAGTGG CGCGAGAGCCGCAAAGTGGAGCCTGGCTACCTGGGCAGTGG < 41bp 0.483066111159175 0.708146447077808 NA NA prediction 0.416292894155616 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43615055 chr10:43615054 nonsynonymous SNV 0.569 4 20 hm7G_associated_SNPs_30331 0 0 0 0 1 RET chr10:43614979 3'AG 43614979 Downstream 76bp 27760 chr22 39822847 39822847 1 + G A UCEC 39822848 + 39822828 39822868 41 CGTGCCAGGTTCTGCCCCCGGCACGAGGACATGACCCTGCT CGTGCCAGGTTCTGCCCCCAGCACGAGGACATGACCCTGCT < 41bp 0.544854305164069 0.752999153246216 NA NA prediction 0.416289696164294 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39822848 chr22:39822847 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_30333 0 0 1 0 1 TAB1 chr22:39822930 5'GT 39822930 Upstream 84bp 27761 chr8 42023047 42023047 1 + C T STAD 42023048 + 42023028 42023068 41 CCCTCCTGATGGAAACTTCCGCCTGCTGTCTTACCATGTCA CCCTCCTGATGGAAACTTCTGCCTGCTGTCTTACCATGTCA < 41bp 0.532126817354294 0.740270049557036 NA NA prediction 0.416286464405484 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42023048 chr8:42023047 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30334 0 0 1 1 1 AP3M2 chr8:42023078 5'GT 42023078 Upstream 32bp 27762 chr2 128385950 128385950 1 + G A UCEC 128385951 + 128385931 128385971 41 TGTCCTTCATCTCCAGGGAGGCCCAGGGCGGGCAGAGGCTG TGTCCTTCATCTCCAGGGAAGCCCAGGGCGGGCAGAGGCTG < 41bp 0.551349941746847 0.75949117841018 NA NA prediction 0.416282473326667 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128385951 chr2:128385950 synonymous SNV . 0 20 hm7G_associated_SNPs_30336 0 0 0 0 1 MYO7B chr2:128385947 3'AG 128385947 Downstream 4bp 27763 chr10 135025027 135025027 1 + G A COAD 135025028 + 135025008 135025048 41 TACGCTGTGGACTTCCCTCGGAACAGCGGGCTGCTGGGGAA TACGCTGTGGACTTCCCTCAGAACAGCGGGCTGCTGGGGAA < 41bp 0.499918533906468 0.708140313549787 NA NA prediction 0.416280627099574 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135025028 chr10:135025027 nonsynonymous SNV 0.030 1 20 hm7G_associated_SNPs_30337 0 0 0 0 1 KNDC1 chr10:135025073 5'GT 135025073 Upstream 47bp 27764 chr16 30991948 30991948 1 + G A rs2305882 30991949 + 30991929 30991969 41 TGGACGTGTGCCCAGTCTCGGCCCGGCAGCTGGAGGGCGTG TGGACGTGTGCCCAGTCTCAGCCCGGCAGCTGGAGGGCGTG < 41bp 0.537036672554909 0.745174482507702 NA NA prediction 0.416275619905585 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30991949 chr16:30991948 synonymous SNV . 0 20 hm7G_associated_SNPs_30338 0 0 1 0 1 SETD1A chr16:30991978 5'GT 30991978 Upstream 31bp 27765 chr4 128905554 128905554 1 + C T KIRC 128905555 + 128905535 128905575 41 GCCAGAATCTGGTTTCAAGCGATTATCCAGTACACATTGAT GCCAGAATCTGGTTTCAAGTGATTATCCAGTACACATTGAT < 41bp 0.506263649769714 0.714397881877488 NA NA prediction 0.416268464215547 Functional Gain - ABHD18 ENSG00000164074 CDS Human protein_coding chr4:128905555 chr4:128905554 synonymous SNV . 0 20 hm7G_associated_SNPs_30341 0 0 1 0 2 ABHD18 chr4:128905494 3'AG 128905494 Downstream 61bp 27766 chr4 128905554 128905554 1 + C T KIRC 128905555 + 128905535 128905575 41 GCCAGAATCTGGTTTCAAGCGATTATCCAGTACACATTGAT GCCAGAATCTGGTTTCAAGTGATTATCCAGTACACATTGAT < 41bp 0.506263649769714 0.714397881877488 NA NA prediction 0.416268464215547 Functional Gain - ABHD18 ENSG00000164074 CDS Human protein_coding chr4:128905555 chr4:128905554 synonymous SNV . 0 20 hm7G_associated_SNPs_30341 0 0 1 0 2 ABHD18 chr4:128905578 5'GT 128905578 Upstream 25bp 27767 chr12 107141269 107141269 1 + G T UCEC 107141270 + 107141250 107141290 41 ACAGTGACGACGGCTGCTGGGTCCCCAGCTGAGAACTCCCA ACAGTGACGACGGCTGCTGTGTCCCCAGCTGAGAACTCCCA < 41bp 0.363463433833607 0.708132596320531 NA NA prediction 0.416265192641063 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107141270 chr12:107141269 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_30342 0 0 0 0 1 RFX4 chr12:107141215 3'AG 107141215 Downstream 55bp 27768 chr16 84900593 84900593 1 + C T HNSC 84900594 + 84900574 84900614 41 AACCATGTTTGGCTCCAACCGAGGGTGATGAGACCCACCAA AACCATGTTTGGCTCCAACTGAGGGTGATGAGACCCACCAA < 41bp 0.51459843874492 0.722728332470629 NA NA prediction 0.416259787451418 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84900594 chr16:84900593 nonsynonymous SNV 0.094 1 20 hm7G_associated_SNPs_30345 0 0 0 0 2 CRISPLD2 chr16:84900503 3'AG 84900503 Downstream 91bp 27769 chr16 84900593 84900593 1 + C T HNSC 84900594 + 84900574 84900614 41 AACCATGTTTGGCTCCAACCGAGGGTGATGAGACCCACCAA AACCATGTTTGGCTCCAACTGAGGGTGATGAGACCCACCAA < 41bp 0.51459843874492 0.722728332470629 NA NA prediction 0.416259787451418 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84900594 chr16:84900593 nonsynonymous SNV 0.094 1 20 hm7G_associated_SNPs_30345 0 0 0 0 2 CRISPLD2 chr16:84900646 5'GT 84900646 Upstream 54bp 27770 chr3 38156492 38156492 1 + C T rs116619354 38156493 + 38156473 38156513 41 GGTTCGGCACCCAGGTCTCCGGAGGAGACACAGTTACCCGA GGTTCGGCACCCAGGTCTCTGGAGGAGACACAGTTACCCGA < 41bp 0.51666612975409 0.724790079311657 NA NA prediction 0.416247899115135 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38156493 chr3:38156492 synonymous SNV . 0 20 hm7G_associated_SNPs_30347 0 0 0 0 2 DLEC1 chr3:38156474 3'AG 38156474 Downstream 19bp 27771 chr3 38156492 38156492 1 + C T rs116619354 38156493 + 38156473 38156513 41 GGTTCGGCACCCAGGTCTCCGGAGGAGACACAGTTACCCGA GGTTCGGCACCCAGGTCTCTGGAGGAGACACAGTTACCCGA < 41bp 0.51666612975409 0.724790079311657 NA NA prediction 0.416247899115135 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38156493 chr3:38156492 synonymous SNV . 0 20 hm7G_associated_SNPs_30347 0 0 0 0 2 DLEC1 chr3:38156544 5'GT 38156544 Upstream 53bp 27772 chr16 1817212 1817212 1 + C T HNSC 1817213 + 1817193 1817233 41 CCACCCGCACCACTCCATCCGCTGCATGGCTGTTGTGTACG CCACCCGCACCACTCCATCTGCTGCATGGCTGTTGTGTACG < 41bp 0.514383500456274 0.722505096356081 NA NA prediction 0.416243191799614 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1817213 chr16:1817212 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_30349 0 0 1 0 1 MAPK8IP3 chr16:1817150 3'AG 1817150 Downstream 63bp 27773 chr2 220147600 220147600 1 + C T LUAD 220147601 + 220147581 220147621 41 GCTTCAGAACCGGGGTTCCCGACACTCAGGCCCCTTCTTTA GCTTCAGAACCGGGGTTCCTGACACTCAGGCCCCTTCTTTA < 41bp 0.530636916880423 0.738758501903231 NA NA prediction 0.416243170045616 Functional Gain - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147601 chr2:220147600 stopgain 0.767 0 20 hm7G_associated_SNPs_30350 0 0 0 0 2 DNAJB2 chr2:220147559 3'AG 220147559 Downstream 42bp 27774 chr2 220147600 220147600 1 + C T LUAD 220147601 + 220147581 220147621 41 GCTTCAGAACCGGGGTTCCCGACACTCAGGCCCCTTCTTTA GCTTCAGAACCGGGGTTCCTGACACTCAGGCCCCTTCTTTA < 41bp 0.530636916880423 0.738758501903231 NA NA prediction 0.416243170045616 Functional Gain - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147601 chr2:220147600 stopgain 0.767 0 20 hm7G_associated_SNPs_30350 0 0 0 0 2 DNAJB2 chr2:220147651 5'GT 220147651 Upstream 52bp 27775 chr20 45801439 45801439 1 + G A SKCM 45801440 + 45801420 45801460 41 CTGGCGTGCACGGCGGCGTGGACTGGATGAGGAAGCTGGCC CTGGCGTGCACGGCGGCGTAGACTGGATGAGGAAGCTGGCC < 41bp 0.518331060096646 0.726452512174436 NA NA prediction 0.41624290415558 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801440 chr20:45801439 synonymous SNV . 0 20 hm7G_associated_SNPs_30351 0 0 1 0 2 EYA2 chr20:45801355 3'AG 45801355 Downstream 85bp 27776 chr20 45801439 45801439 1 + G A SKCM 45801440 + 45801420 45801460 41 CTGGCGTGCACGGCGGCGTGGACTGGATGAGGAAGCTGGCC CTGGCGTGCACGGCGGCGTAGACTGGATGAGGAAGCTGGCC < 41bp 0.518331060096646 0.726452512174436 NA NA prediction 0.41624290415558 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45801440 chr20:45801439 synonymous SNV . 0 20 hm7G_associated_SNPs_30351 0 0 1 0 2 EYA2 chr20:45801515 5'GT 45801515 Upstream 77bp 27777 chr7 128807697 128807697 1 + G T LUSC 128807698 + 128807678 128807718 41 TCTACAACCAGCAGCACCGGGCTGACCCATGGTACTGAGAA TCTACAACCAGCAGCACCGTGCTGACCCATGGTACTGAGAA < 41bp 0.69276112641725 0.900881284115329 NA NA prediction 0.41624031539616 Functional Gain - TSPAN33 ENSG00000158457 CDS Human protein_coding chr7:128807698 chr7:128807697 synonymous SNV . 0 20 hm7G_associated_SNPs_30353 0 0 0 0 1 TSPAN33 chr7:128807614 3'AG 128807614 Downstream 84bp 27778 chr1 26514789 26514789 1 + C T UCEC 26514790 + 26514770 26514810 41 AGGCCGGGCCCCCCCACCCCGAGAGGAAGGTAGGTGTCTCG AGGCCGGGCCCCCCCACCCTGAGAGGAAGGTAGGTGTCTCG < 41bp 0.504718082898765 0.712838039063436 NA NA prediction 0.416239912329343 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26514790 chr1:26514789 stopgain 0.421 0 20 hm7G_associated_SNPs_30354 0 0 1 0 2 CNKSR1 chr1:26514725 3'AG 26514725 Downstream 65bp 27779 chr1 26514789 26514789 1 + C T UCEC 26514790 + 26514770 26514810 41 AGGCCGGGCCCCCCCACCCCGAGAGGAAGGTAGGTGTCTCG AGGCCGGGCCCCCCCACCCTGAGAGGAAGGTAGGTGTCTCG < 41bp 0.504718082898765 0.712838039063436 NA NA prediction 0.416239912329343 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26514790 chr1:26514789 stopgain 0.421 0 20 hm7G_associated_SNPs_30354 0 0 1 0 2 CNKSR1 chr1:26514798 5'GT 26514798 Upstream 10bp 27780 chr7 34118473 34118473 1 + C T UCEC 34118474 + 34118454 34118494 41 CTCACTCCTCCGCAGAGCCCGGCGTTTGCACGGTGTTTGGA CTCACTCCTCCGCAGAGCCTGGCGTTTGCACGGTGTTTGGA < 41bp 0.511602747621463 0.719721534754279 NA NA prediction 0.416237574265632 Functional Gain - BMPER ENSG00000164619 CDS Human protein_coding chr7:34118474 chr7:34118473 synonymous SNV . 0 20 hm7G_associated_SNPs_30355 0 0 0 0 1 BMPER chr7:34118469 3'AG 34118469 Downstream 5bp 27781 chr8 55055223 55055223 1 + G T LUAD 55055224 + 55055204 55055244 41 CTGTTTTGACATATTTCAGGGTGCTGACACCTTTACGGCAA CTGTTTTGACATATTTCAGTGTGCTGACACCTTTACGGCAA < 41bp 0.382373153251478 0.708115099244993 NA NA prediction 0.416230198489987 Functional Gain - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55055224 chr8:55055223 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_30358 0 0 1 0 1 MRPL15 chr8:55055223 5'GT 55055223 Upstream 1bp 27782 chr7 40039015 40039015 1 + C T HNSC 40039016 + 40038996 40039036 41 AGATATTGACTGGGGAAAACGCTGCGTGGATAAATTTGATA AGATATTGACTGGGGAAAATGCTGCGTGGATAAATTTGATA < 41bp 0.510318579838671 0.718432448054776 NA NA prediction 0.41622773643221 Functional Gain - CDK13 ENSG00000065883 CDS Human protein_coding chr7:40039016 chr7:40039015 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30359 0 0 1 0 2 CDK13 chr7:40038960 3'AG 40038960 Downstream 56bp 27783 chr7 40039015 40039015 1 + C T HNSC 40039016 + 40038996 40039036 41 AGATATTGACTGGGGAAAACGCTGCGTGGATAAATTTGATA AGATATTGACTGGGGAAAATGCTGCGTGGATAAATTTGATA < 41bp 0.510318579838671 0.718432448054776 NA NA prediction 0.41622773643221 Functional Gain - CDK13 ENSG00000065883 CDS Human protein_coding chr7:40039016 chr7:40039015 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30359 0 0 1 0 2 CDK13 chr7:40039099 5'GT 40039099 Upstream 85bp 27784 chr5 2755233 2755233 1 + G A BLCA 2755234 + 2755214 2755254 41 GCGAGGAACAGCCGGCCCCGGAGGCTCGGGCTCGGGGTCTC GCGAGGAACAGCCGGCCCCAGAGGCTCGGGCTCGGGGTCTC < 41bp 0.484848375921521 0.708112441030209 NA NA prediction 0.416224882060418 Functional Gain - C5orf38 ENSG00000186493 CDS Human protein_coding chr5:2755234 chr5:2755233 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30360 0 0 0 0 1 C5orf38 chr5:2755143 3'AG 2755143 Downstream 91bp 27785 chr17 30800901 30800901 1 + C T rs141504283 30800902 + 30800882 30800922 41 TTGAGGGTTATGACTCCATCGACAGCCCCAAGGCCATCACA TTGAGGGTTATGACTCCATTGACAGCCCCAAGGCCATCACA < 41bp 0.491605013649476 0.708107893731735 NA NA prediction 0.416215787463469 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30800902 chr17:30800901 synonymous SNV . 0 20 hm7G_associated_SNPs_30361 0 0 1 0 2 PSMD11 chr17:30800819 3'AG 30800819 Downstream 83bp 27786 chr17 30800901 30800901 1 + C T rs141504283 30800902 + 30800882 30800922 41 TTGAGGGTTATGACTCCATCGACAGCCCCAAGGCCATCACA TTGAGGGTTATGACTCCATTGACAGCCCCAAGGCCATCACA < 41bp 0.491605013649476 0.708107893731735 NA NA prediction 0.416215787463469 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30800902 chr17:30800901 synonymous SNV . 0 20 hm7G_associated_SNPs_30361 0 0 1 0 2 PSMD11 chr17:30800963 5'GT 30800963 Upstream 63bp 27787 chr9 35607613 35607613 1 + G A SKCM 35607614 + 35607594 35607634 41 GGAGCCATTGGCCGTGGTGGGCTCCCCATACTGGATGGCTC GGAGCCATTGGCCGTGGTGAGCTCCCCATACTGGATGGCTC < 41bp 0.483260784586792 0.708104930520086 NA NA prediction 0.416209861040173 Functional Gain - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607614 chr9:35607613 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_30362 0 0 1 0 2 TESK1 chr9:35607579 3'AG 35607579 Downstream 35bp 27788 chr9 35607613 35607613 1 + G A SKCM 35607614 + 35607594 35607634 41 GGAGCCATTGGCCGTGGTGGGCTCCCCATACTGGATGGCTC GGAGCCATTGGCCGTGGTGAGCTCCCCATACTGGATGGCTC < 41bp 0.483260784586792 0.708104930520086 NA NA prediction 0.416209861040173 Functional Gain - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607614 chr9:35607613 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_30362 0 0 1 0 2 TESK1 chr9:35607669 5'GT 35607669 Upstream 57bp 27789 chr17 2265510 2265510 1 + C T LGG 2265511 + 2265491 2265531 41 CACGTATGGGTACGCACGGCGCTCATCGAGAAAGTTCTGGA CACGTATGGGTACGCACGGTGCTCATCGAGAAAGTTCTGGA < 41bp 0.507959276802292 0.716059826026698 NA NA prediction 0.41620109844881 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2265511 chr17:2265510 nonsynonymous SNV 0.934 3 20 hm7G_associated_SNPs_30364 0 0 0 0 1 SGSM2 chr17:2265564 5'GT 2265564 Upstream 55bp 27790 chr16 599054 599054 1 + C T HNSC 599055 + 599035 599075 41 GAGTCTGTCGGCTTCCCCGCGGGTGACAGCGTGCAGCAGCG GAGTCTGTCGGCTTCCCCGTGGGTGACAGCGTGCAGCAGCG < 41bp 0.498333182698111 0.708100208159608 NA NA prediction 0.416200416319215 Functional Gain - CAPN15 ENSG00000103326 CDS Human protein_coding chr16:599055 chr16:599054 nonsynonymous SNV 0.033 1 20 hm7G_associated_SNPs_30366 0 0 1 0 1 CAPN15 chr16:598993 3'AG 598993 Downstream 62bp 27791 chr7 73511042 73511042 1 + C T GBM 73511043 + 73511023 73511063 41 ACTACTGGGCCCGCTATGGCGAGTCCTGCCATGGGTGCTCT ACTACTGGGCCCGCTATGGTGAGTCCTGCCATGGGTGCTCT < 41bp 0.516769782374861 0.724869774594308 NA NA prediction 0.416199984438894 Functional Gain - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73511043 chr7:73511042 synonymous SNV . 0 20 hm7G_associated_SNPs_30367 0 0 1 0 2 LIMK1 chr7:73510952 3'AG 73510952 Downstream 91bp 27792 chr7 73511042 73511042 1 + C T GBM 73511043 + 73511023 73511063 41 ACTACTGGGCCCGCTATGGCGAGTCCTGCCATGGGTGCTCT ACTACTGGGCCCGCTATGGTGAGTCCTGCCATGGGTGCTCT < 41bp 0.516769782374861 0.724869774594308 NA NA prediction 0.416199984438894 Functional Gain - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73511043 chr7:73511042 synonymous SNV . 0 20 hm7G_associated_SNPs_30367 0 0 1 0 2 LIMK1 chr7:73511090 5'GT 73511090 Upstream 49bp 27793 chr3 158310341 158310341 1 + G T UCEC 158310342 + 158310322 158310362 41 GAGAGCTCATAATCGTAGAGGACATAATGATGGTGAAGATT GAGAGCTCATAATCGTAGATGACATAATGATGGTGAAGATT < 41bp 0.387271153037091 0.708097022550577 NA NA prediction 0.416194045101155 Functional Gain - MLF1 ENSG00000178053 CDS Human protein_coding chr3:158310342 chr3:158310341 stopgain 0.001 0 20 hm7G_associated_SNPs_30369 0 0 1 0 1 MLF1 chr3:158310370 5'GT 158310370 Upstream 30bp 27794 chr12 121605383 121605383 1 + C T rs28360456 121605384 + 121605364 121605404 41 ACAGTTTCCGTCGCCTTGACGACAAGACCACCAACGTGTCC ACAGTTTCCGTCGCCTTGATGACAAGACCACCAACGTGTCC < 41bp 0.527030307627468 0.735125938752934 NA NA prediction 0.416191262250933 Functional Gain - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121605384 chr12:121605383 synonymous SNV . 0 20 hm7G_associated_SNPs_30370 0 0 0 0 2 P2RX7 chr12:121605291 3'AG 121605291 Downstream 93bp 27795 chr12 121605383 121605383 1 + C T rs28360456 121605384 + 121605364 121605404 41 ACAGTTTCCGTCGCCTTGACGACAAGACCACCAACGTGTCC ACAGTTTCCGTCGCCTTGATGACAAGACCACCAACGTGTCC < 41bp 0.527030307627468 0.735125938752934 NA NA prediction 0.416191262250933 Functional Gain - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121605384 chr12:121605383 synonymous SNV . 0 20 hm7G_associated_SNPs_30370 0 0 0 0 2 P2RX7 chr12:121605427 5'GT 121605427 Upstream 45bp 27796 chr11 68696697 68696697 1 + C T UCEC 68696698 + 68696678 68696718 41 TGCTGCCCGAGAGCTACTTCGACGTGGTGGTCATTGACGAG TGCTGCCCGAGAGCTACTTTGACGTGGTGGTCATTGACGAG < 41bp 0.509331594855524 0.717426826338818 NA NA prediction 0.416190462966586 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68696698 chr11:68696697 synonymous SNV . 0 20 hm7G_associated_SNPs_30371 0 0 1 0 1 IGHMBP2 chr11:68696651 3'AG 68696651 Downstream 47bp 27797 chr12 108006600 108006600 1 + C T UCEC 108006601 + 108006581 108006621 41 TGCGTCCGTGGGGACGAGGCGATGGTTCAGATGCTGCTGGA TGCGTCCGTGGGGACGAGGTGATGGTTCAGATGCTGCTGGA < 41bp 0.490311917797458 0.708094089333604 NA NA prediction 0.416188178667207 Functional Gain - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108006601 chr12:108006600 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30372 0 0 0 0 2 BTBD11 chr12:108006557 3'AG 108006557 Downstream 44bp 27798 chr12 108006600 108006600 1 + C T UCEC 108006601 + 108006581 108006621 41 TGCGTCCGTGGGGACGAGGCGATGGTTCAGATGCTGCTGGA TGCGTCCGTGGGGACGAGGTGATGGTTCAGATGCTGCTGGA < 41bp 0.490311917797458 0.708094089333604 NA NA prediction 0.416188178667207 Functional Gain - BTBD11 ENSG00000151136 CDS Human protein_coding chr12:108006601 chr12:108006600 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30372 0 0 0 0 2 BTBD11 chr12:108006646 5'GT 108006646 Upstream 47bp 27799 chr19 4954449 4954449 1 + G A CESC 4954450 + 4954430 4954470 41 GGAGGAGCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGG GGAGGAGCAGCAGGAGGGGAGCTTCGCGTCCCCCAGGACGG < 41bp 0.564407967993663 0.772494171656696 NA NA prediction 0.416172407326065 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954450 chr19:4954449 . 0.008 0 20 hm7G_associated_SNPs_30377 0 0 0 0 2 UHRF1 chr19:4954362 3'AG 4954362 Downstream 88bp 27800 chr19 4954449 4954449 1 + G A CESC 4954450 + 4954430 4954470 41 GGAGGAGCAGCAGGAGGGGGGCTTCGCGTCCCCCAGGACGG GGAGGAGCAGCAGGAGGGGAGCTTCGCGTCCCCCAGGACGG < 41bp 0.564407967993663 0.772494171656696 NA NA prediction 0.416172407326065 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4954450 chr19:4954449 . 0.008 0 20 hm7G_associated_SNPs_30377 0 0 0 0 2 UHRF1 chr19:4954500 5'GT 4954500 Upstream 52bp 27801 chr2 220505284 220505284 1 + C T UCEC 220505285 + 220505265 220505305 41 TTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGCA TTGTTGCTCATCCTCATGCTGGCAAAACACCATCCTGAGCA < 41bp 0.512744502863355 0.720828103088342 NA NA prediction 0.416167200449974 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220505285 chr2:220505284 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_30380 0 0 0 0 1 SLC4A3 chr2:220505321 5'GT 220505321 Upstream 38bp 27802 chr9 135941933 135941933 1 + G A HNSC 135941934 + 135941914 135941954 41 CAGGTAACTATGGCCTTCGGGATCAGCACATGGCCATTGCT CAGGTAACTATGGCCTTCGAGATCAGCACATGGCCATTGCT < 41bp 0.532197304437999 0.740278246930595 NA NA prediction 0.416161884985192 Functional Gain - CEL ENSG00000170835 CDS Human protein_coding chr9:135941934 chr9:135941933 synonymous SNV . 0 20 hm7G_associated_SNPs_30381 0 0 1 0 1 CEL chr9:135941917 3'AG 135941917 Downstream 17bp 27803 chrX 9912880 9912880 1 + C T UCEC 9912881 + 9912861 9912901 41 GTGGTGAACCTCCTGCTGTCGCTGTCAGGCCGCCTGGCCCG GTGGTGAACCTCCTGCTGTTGCTGTCAGGCCGCCTGGCCCG < 41bp 0.517687103584679 0.725767924851353 NA NA prediction 0.416161642533349 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912881 chrX:9912880 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_30382 0 0 0 0 1 SHROOM2 chrX:9912953 5'GT 9912953 Upstream 74bp 27804 chr11 93911600 93911600 1 + C T SKCM 93911601 + 93911581 93911621 41 CCCCGCTGTTCTGGCGTTTCGCAGCTGCTCCTCATATTTGC CCCCGCTGTTCTGGCGTTTTGCAGCTGCTCCTCATATTTGC < 41bp 0.524343425396441 0.732420929827159 NA NA prediction 0.416155008861436 Functional Gain - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93911601 chr11:93911600 synonymous SNV . 0 20 hm7G_associated_SNPs_30385 0 0 0 0 1 PANX1 chr11:93911535 3'AG 93911535 Downstream 66bp 27805 chr16 22262623 22262623 1 + C T SKCM 22262624 + 22262604 22262644 41 CTGGGGGGAGGAGTATAATCGGCACAAGCCCCCCAAGCAGG CTGGGGGGAGGAGTATAATTGGCACAAGCCCCCCAAGCAGG < 41bp 0.521778697318257 0.729839537460787 NA NA prediction 0.416121680285061 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22262624 chr16:22262623 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_30390 0 0 1 0 1 EEF2K chr16:22262643 5'GT 22262643 Upstream 21bp 27806 chr10 94824145 94824145 1 + G A rs7917267 94824146 + 94824126 94824166 41 CCTGAACATCAGGGCATCCGGGCAAGGGACCAGCTGCATCG CCTGAACATCAGGGCATCCAGGCAAGGGACCAGCTGCATCG < 41bp 0.480024632497752 0.708060593629055 NA NA prediction 0.416121187258111 Functional Gain - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94824146 chr10:94824145 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_30391 0 0 0 0 1 CYP26C1 chr10:94824138 3'AG 94824138 Downstream 8bp 27807 chrX 17739685 17739685 1 + C T STAD 17739686 + 17739666 17739706 41 AAAGCACTACCTCTCCCGACGCCAGAGGAGAAGATGAAACA AAAGCACTACCTCTCCCGATGCCAGAGGAGAAGATGAAACA < 41bp 0.509984089615746 0.718042258429496 NA NA prediction 0.4161163376275 Functional Gain - NHS ENSG00000188158 CDS Human protein_coding chrX:17739686 chrX:17739685 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_30392 0 0 0 0 1 NHS chrX:17739753 5'GT 17739753 Upstream 69bp 27808 chr19 45975945 45975945 1 + G A BLCA 45975946 + 45975926 45975966 41 CCCTACGAAGAGGGGCCCGGGCCGGGCCCGCTGGCGGAGGT CCCTACGAAGAGGGGCCCGAGCCGGGCCCGCTGGCGGAGGT < 41bp 0.528415782146907 0.736473645549332 NA NA prediction 0.416115726804852 Functional Gain - FOSB ENSG00000125740 CDS Human protein_coding chr19:45975946 chr19:45975945 nonsynonymous SNV 0.795 3 20 hm7G_associated_SNPs_30393 0 0 0 0 1 FOSB chr19:45975964 5'GT 45975964 Upstream 20bp 27809 chr17 41001199 41001199 1 + G A COAD 41001200 + 41001180 41001220 41 CAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGGAGGA CAGCGCCCACAGCTGACTCAGCAGGTCCTGGGAAAGGAGGA < 41bp 0.532937586722233 0.740992428331304 NA NA prediction 0.416109683218142 Functional Gain - AOC2 ENSG00000131480 CDS Human protein_coding chr17:41001200 chr17:41001199 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_30396 0 0 1 0 1 AOC2 chr17:41001103 3'AG 41001103 Downstream 97bp 27810 chr20 57782012 57782012 1 + C T SKCM 57782013 + 57781993 57782033 41 GCTGAGAGCCAGTAGACTTCGCACACCAACCTGGGTGCGAA GCTGAGAGCCAGTAGACTTTGCACACCAACCTGGGTGCGAA < 41bp 0.513891102495892 0.721945562956567 NA NA prediction 0.416108920921349 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57782013 chr20:57782012 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_30397 0 0 0 0 2 ZNF831 chr20:57781960 3'AG 57781960 Downstream 53bp 27811 chr20 57782012 57782012 1 + C T SKCM 57782013 + 57781993 57782033 41 GCTGAGAGCCAGTAGACTTCGCACACCAACCTGGGTGCGAA GCTGAGAGCCAGTAGACTTTGCACACCAACCTGGGTGCGAA < 41bp 0.513891102495892 0.721945562956567 NA NA prediction 0.416108920921349 Functional Gain - ZNF831 ENSG00000124203 CDS Human protein_coding chr20:57782013 chr20:57782012 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_30397 0 0 0 0 2 ZNF831 chr20:57782111 5'GT 57782111 Upstream 100bp 27812 chr1 36367665 36367665 1 + C T rs61751003 36367666 + 36367646 36367686 41 CGCCCATCTTGCAGTACGGCGGCCGGGTGAGCAGGGTCAGG CGCCCATCTTGCAGTACGGTGGCCGGGTGAGCAGGGTCAGG < 41bp 0.502748321020889 0.710802689625194 NA NA prediction 0.41610873720861 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36367666 chr1:36367665 synonymous SNV . 0 20 hm7G_associated_SNPs_30398 0 0 1 0 1 AGO1 chr1:36367671 5'GT 36367671 Upstream 7bp 27813 chr4 1377709 1377709 1 + G A OV 1377710 + 1377690 1377730 41 TACCGCCCGCGCTCGCATTGGGAGAAAAGTCTTCGCCAAGT TACCGCCCGCGCTCGCATTAGGAGAAAAGTCTTCGCCAAGT < 41bp 0.501300430113083 0.709353838088748 NA NA prediction 0.416106815951329 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1377710 chr4:1377709 nonsynonymous SNV 0.010 0 20 hm7G_associated_SNPs_30399 0 0 1 0 1 UVSSA chr4:1377728 5'GT 1377728 Upstream 20bp 27814 chr11 73364058 73364058 1 + C T GBM 73364059 + 73364039 73364079 41 CTGGAGGCAAACTCCACCCCGGTGAGTCTCCCGTTCTCTCC CTGGAGGCAAACTCCACCCTGGTGAGTCTCCCGTTCTCTCC < 41bp 0.517082501135372 0.725135214719591 NA NA prediction 0.416105427168438 Functional Gain - PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73364059 chr11:73364058 nonsynonymous SNV 0.243 2 20 hm7G_associated_SNPs_30400 0 0 1 0 2 PLEKHB1 chr11:73364020 3'AG 73364020 Downstream 39bp 27815 chr11 73364058 73364058 1 + C T GBM 73364059 + 73364039 73364079 41 CTGGAGGCAAACTCCACCCCGGTGAGTCTCCCGTTCTCTCC CTGGAGGCAAACTCCACCCTGGTGAGTCTCCCGTTCTCTCC < 41bp 0.517082501135372 0.725135214719591 NA NA prediction 0.416105427168438 Functional Gain - PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73364059 chr11:73364058 nonsynonymous SNV 0.243 2 20 hm7G_associated_SNPs_30400 0 0 1 0 2 PLEKHB1 chr11:73364059 5'GT 73364059 Upstream 2bp 27816 chr5 38885529 38885529 1 + C T UCEC 38885530 + 38885510 38885550 41 TGTACTTGGGATCCTGGGACGGACACTGCCTTGGGGTGGTC TGTACTTGGGATCCTGGGATGGACACTGCCTTGGGGTGGTC < 41bp 0.517998579964371 0.72605128662457 NA NA prediction 0.416105413320398 Functional Gain - OSMR ENSG00000145623 CDS Human protein_coding chr5:38885530 chr5:38885529 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30401 0 0 1 0 2 OSMR chr5:38885451 3'AG 38885451 Downstream 79bp 27817 chr5 38885529 38885529 1 + C T UCEC 38885530 + 38885510 38885550 41 TGTACTTGGGATCCTGGGACGGACACTGCCTTGGGGTGGTC TGTACTTGGGATCCTGGGATGGACACTGCCTTGGGGTGGTC < 41bp 0.517998579964371 0.72605128662457 NA NA prediction 0.416105413320398 Functional Gain - OSMR ENSG00000145623 CDS Human protein_coding chr5:38885530 chr5:38885529 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30401 0 0 1 0 2 OSMR chr5:38885586 5'GT 38885586 Upstream 58bp 27818 chr9 138439720 138439720 1 + G A UCEC 138439721 + 138439701 138439741 41 TCTCTGTCATCTACAGATGGGGGCAGGAAGCTCATATACCT TCTCTGTCATCTACAGATGAGGGCAGGAAGCTCATATACCT < 41bp 0.505690754670831 0.71374255170901 NA NA prediction 0.416103594076359 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439721 chr9:138439720 stopgain 0.001 2 20 hm7G_associated_SNPs_30402 0 0 0 2 1 OBP2A chr9:138439717 3'AG 138439717 Downstream 4bp 27819 chr3 126748794 126748794 1 + G A UCEC 126748795 + 126748775 126748815 41 CACGCCCGACCTGGAGAGCGGCACCAAGCTGTGGCACCTGG CACGCCCGACCTGGAGAGCAGCACCAAGCTGTGGCACCTGG < 41bp 0.518742385559568 0.726789504715069 NA NA prediction 0.416094238311003 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126748795 chr3:126748794 nonsynonymous SNV 0.970 3 20 hm7G_associated_SNPs_30404 0 0 1 0 1 PLXNA1 chr3:126748717 3'AG 126748717 Downstream 78bp 27820 chr13 113487248 113487248 1 + C T UCEC 113487249 + 113487229 113487269 41 AAGACGATGACAGCGTAGACGGCCCCAGGAAATCGCCGGAC AAGACGATGACAGCGTAGATGGCCCCAGGAAATCGCCGGAC < 41bp 0.540552122025751 0.748599013510863 NA NA prediction 0.416093782970224 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487249 chr13:113487248 synonymous SNV . 0 20 hm7G_associated_SNPs_30405 0 0 1 0 2 ATP11A chr13:113487174 3'AG 113487174 Downstream 75bp 27821 chr13 113487248 113487248 1 + C T UCEC 113487249 + 113487229 113487269 41 AAGACGATGACAGCGTAGACGGCCCCAGGAAATCGCCGGAC AAGACGATGACAGCGTAGATGGCCCCAGGAAATCGCCGGAC < 41bp 0.540552122025751 0.748599013510863 NA NA prediction 0.416093782970224 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487249 chr13:113487248 synonymous SNV . 0 20 hm7G_associated_SNPs_30405 0 0 1 0 2 ATP11A chr13:113487337 5'GT 113487337 Upstream 90bp 27822 chr20 61956811 61956811 1 + G A rs201493226 61956812 + 61956792 61956832 41 GGGTCCACCAGGGGTCAAAGGAGAGAAGGGAGACCATGGGC GGGTCCACCAGGGGTCAAAAGAGAGAAGGGAGACCATGGGC < 41bp 0.524693440809043 0.732737776083288 NA NA prediction 0.416088670548491 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61956812 chr20:61956811 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30408 0 0 0 0 1 COL20A1 chr20:61956846 5'GT 61956846 Upstream 36bp 27823 chr8 21848376 21848376 1 + C T LGG 21848377 + 21848357 21848397 41 GTCCAACCTGACAGACATGCGGTGTCGGACTACCTTCTACA GTCCAACCTGACAGACATGTGGTGTCGGACTACCTTCTACA < 41bp 0.49281522980325 0.708043576227847 NA NA prediction 0.416087152455693 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21848377 chr8:21848376 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30410 0 0 1 0 2 XPO7 chr8:21848322 3'AG 21848322 Downstream 55bp 27824 chr8 21848376 21848376 1 + C T LGG 21848377 + 21848357 21848397 41 GTCCAACCTGACAGACATGCGGTGTCGGACTACCTTCTACA GTCCAACCTGACAGACATGTGGTGTCGGACTACCTTCTACA < 41bp 0.49281522980325 0.708043576227847 NA NA prediction 0.416087152455693 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21848377 chr8:21848376 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30410 0 0 1 0 2 XPO7 chr8:21848430 5'GT 21848430 Upstream 55bp 27825 chr1 181018257 181018257 1 + C T COAD 181018258 + 181018238 181018278 41 GGGGTCCCTGAATTTATTTCGGTTGGGTACGTGGACTCGCA GGGGTCCCTGAATTTATTTTGGTTGGGTACGTGGACTCGCA < 41bp 0.532813091786361 0.740855140808095 NA NA prediction 0.416084098043469 Functional Gain - MR1 ENSG00000153029 CDS Human protein_coding chr1:181018258 chr1:181018257 nonsynonymous SNV 0.014 2 20 hm7G_associated_SNPs_30411 0 0 1 0 1 MR1 chr1:181018188 3'AG 181018188 Downstream 70bp 27826 chr19 3148678 3148678 1 + C T PAAD 3148679 + 3148659 3148699 41 GGAGGAGCGCAAGGGCTTCCGGCCCCTGGTCTACCAGAACA GGAGGAGCGCAAGGGCTTCTGGCCCCTGGTCTACCAGAACA < 41bp 0.494979126673687 0.708041167120732 NA NA prediction 0.416082334241465 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3148679 chr19:3148678 nonsynonymous SNV 0.197 3 20 hm7G_associated_SNPs_30412 0 0 0 0 2 GNA15 chr19:3148589 3'AG 3148589 Downstream 90bp 27827 chr19 3148678 3148678 1 + C T PAAD 3148679 + 3148659 3148699 41 GGAGGAGCGCAAGGGCTTCCGGCCCCTGGTCTACCAGAACA GGAGGAGCGCAAGGGCTTCTGGCCCCTGGTCTACCAGAACA < 41bp 0.494979126673687 0.708041167120732 NA NA prediction 0.416082334241465 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3148679 chr19:3148678 nonsynonymous SNV 0.197 3 20 hm7G_associated_SNPs_30412 0 0 0 0 2 GNA15 chr19:3148773 5'GT 3148773 Upstream 96bp 27828 chr5 5303564 5303564 1 + C T UCEC 5303565 + 5303545 5303585 41 GCTGCCCACCTGCATGGAGCGCCGGGCCCTGGGCAGAGGTA GCTGCCCACCTGCATGGAGTGCCGGGCCCTGGGCAGAGGTA < 41bp 0.507373939985364 0.715413164889041 NA NA prediction 0.416078449807356 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303565 chr5:5303564 synonymous SNV . 0 20 hm7G_associated_SNPs_30413 0 0 0 0 1 ADAMTS16 chr5:5303582 5'GT 5303582 Upstream 19bp 27829 chr18 3456578 3456578 1 + G T COAD 3456579 + 3456559 3456599 41 CACACCTGTCTACGCTACAGGTAAAGAAAGAGAGCGTGAGG CACACCTGTCTACGCTACATGTAAAGAAAGAGAGCGTGAGG < 41bp 0.390481899603125 0.708039128378221 NA NA prediction 0.416078256756443 Functional Gain - TGIF1 ENSG00000177426 CDS Human protein_coding chr18:3456579 chr18:3456578 nonsynonymous SNV 0.986 5 20 hm7G_associated_SNPs_30414 0 0 0 0 1 TGIF1 chr18:3456578 5'GT 3456578 Upstream 1bp 27830 chr1 77806157 77806157 1 + C T SKCM 77806158 + 77806138 77806178 41 AACAGCAGGGCCGACCAGACGACAATGTAAAAGCTACCCAA AACAGCAGGGCCGACCAGATGACAATGTAAAAGCTACCCAA < 41bp 0.50788635615332 0.715915033112692 NA NA prediction 0.416057353918743 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:77806158 chr1:77806157 synonymous SNV . 0 20 hm7G_associated_SNPs_30415 0 0 0 0 2 AK5 chr1:77806062 3'AG 77806062 Downstream 96bp 27831 chr1 77806157 77806157 1 + C T SKCM 77806158 + 77806138 77806178 41 AACAGCAGGGCCGACCAGACGACAATGTAAAAGCTACCCAA AACAGCAGGGCCGACCAGATGACAATGTAAAAGCTACCCAA < 41bp 0.50788635615332 0.715915033112692 NA NA prediction 0.416057353918743 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:77806158 chr1:77806157 synonymous SNV . 0 20 hm7G_associated_SNPs_30415 0 0 0 0 2 AK5 chr1:77806253 5'GT 77806253 Upstream 97bp 27832 chr12 53823728 53823728 1 + G A SKCM 53823729 + 53823709 53823749 41 CTTTGGCTCTGCTCCTGTGGGAGATACTGAGCCGCTGCCCA CTTTGGCTCTGCTCCTGTGAGAGATACTGAGCCGCTGCCCA < 41bp 0.512098081543765 0.720122210534966 NA NA prediction 0.416048257982401 Functional Gain - AMHR2 ENSG00000135409 CDS Human protein_coding chr12:53823729 chr12:53823728 stopgain 1.000 0 20 hm7G_associated_SNPs_30416 0 0 1 0 1 AMHR2 chr12:53823762 5'GT 53823762 Upstream 35bp 27833 chr6 39824206 39824206 1 + C T CESC 39824207 + 39824187 39824227 41 GAGTTCTCCAGCCCCATCCCGAACGCAGAGGAGCTCAACAT GAGTTCTCCAGCCCCATCCTGAACGCAGAGGAGCTCAACAT < 41bp 0.534471008690074 0.742485395694702 NA NA prediction 0.416028774009255 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39824207 chr6:39824206 nonsynonymous SNV 0.246 5 20 hm7G_associated_SNPs_30420 0 0 0 0 1 DAAM2 chr6:39824246 5'GT 39824246 Upstream 41bp 27834 chr22 22989517 22989517 1 + G A SKCM 22989518 + 22989498 22989538 41 AGGACGGCCAGGTCCGGATGGTGGTGGGAGCTGCTGGGGGC AGGACGGCCAGGTCCGGATAGTGGTGGGAGCTGCTGGGGGC < 41bp 0.495955865597349 0.7080126065659 NA NA prediction 0.416025213131801 Functional Gain - GGTLC2 ENSG00000100121 CDS Human protein_coding chr22:22989518 chr22:22989517 nonsynonymous SNV 0.256 2 20 hm7G_associated_SNPs_30422 0 0 0 0 1 GGTLC2 chr22:22989453 3'AG 22989453 Downstream 65bp 27835 chr17 12647716 12647716 1 + C T COAD 12647717 + 12647697 12647737 41 GCAGCAGCAGCAGCAACACCGATTCAGCTACCTAGGGATGC GCAGCAGCAGCAGCAACACTGATTCAGCTACCTAGGGATGC < 41bp 0.52104390314622 0.729055081712689 NA NA prediction 0.416022357132939 Functional Gain - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12647717 chr17:12647716 stopgain 0.996 0 20 hm7G_associated_SNPs_30424 0 0 0 0 1 MYOCD chr17:12647753 5'GT 12647753 Upstream 38bp 27836 chr4 1360177 1360177 1 + G T UCEC 1360178 + 1360158 1360198 41 GGAGGTCCCTGAGAAGGAGGGGTATGAGCCACACATCCCCG GGAGGTCCCTGAGAAGGAGTGGTATGAGCCACACATCCCCG < 41bp 0.708176926394678 0.916187726922021 NA NA prediction 0.416021601054685 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1360178 chr4:1360177 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_30425 0 0 1 0 2 UVSSA chr4:1360108 3'AG 1360108 Downstream 70bp 27837 chr4 1360177 1360177 1 + G T UCEC 1360178 + 1360158 1360198 41 GGAGGTCCCTGAGAAGGAGGGGTATGAGCCACACATCCCCG GGAGGTCCCTGAGAAGGAGTGGTATGAGCCACACATCCCCG < 41bp 0.708176926394678 0.916187726922021 NA NA prediction 0.416021601054685 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1360178 chr4:1360177 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_30425 0 0 1 0 2 UVSSA chr4:1360219 5'GT 1360219 Upstream 43bp 27838 chr5 169649 169649 1 + G A LGG 169650 + 169630 169670 41 CACCAGCAGCACTTCCTCCGGGAGCTGGAGCGCTGCCAGCA CACCAGCAGCACTTCCTCCAGGAGCTGGAGCGCTGCCAGCA < 41bp 0.539812098071283 0.747821039882657 NA NA prediction 0.416017883622746 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:169650 chr5:169649 nonsynonymous SNV 0.117 0 20 hm7G_associated_SNPs_30426 0 0 0 0 1 PLEKHG4B chr5:169707 5'GT 169707 Upstream 59bp 27839 chr2 9583780 9583780 1 + C T LUAD 9583781 + 9583761 9583801 41 TTTATTCGTGCTTTGAAACCGCCTCATGTGGTTAGTCTATG TTTATTCGTGCTTTGAAACTGCCTCATGTGGTTAGTCTATG < 41bp 0.504096001240214 0.712103774492592 NA NA prediction 0.416015546504754 Functional Gain - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9583781 chr2:9583780 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_30427 0 0 1 0 1 CPSF3 chr2:9583790 5'GT 9583790 Upstream 11bp 27840 chr15 45706832 45706832 1 + G T STAD 45706833 + 45706813 45706853 41 GGGCCTGACACAACCAAAGGGAGTTCTCCTCTATGGGCCCC GGGCCTGACACAACCAAAGTGAGTTCTCCTCTATGGGCCCC < 41bp 0.356779768233796 0.708007381575413 NA NA prediction 0.416014763150827 Functional Gain - SPATA5L1 ENSG00000171763 CDS Human protein_coding chr15:45706833 chr15:45706832 stopgain 0.967 1 20 hm7G_associated_SNPs_30428 0 0 1 5 1 SPATA5L1 chr15:45706769 3'AG 45706769 Downstream 64bp 27841 chr8 10387120 10387120 1 + G T OV 10387121 + 10387101 10387141 41 CGTGGCAGGTGAGTATTCAGGCAAGAAGTGAACCTTTCTGT CGTGGCAGGTGAGTATTCATGCAAGAAGTGAACCTTTCTGT < 41bp 0.372769397199419 0.708005178688883 NA NA prediction 0.416010357377767 Functional Gain - PRSS55 ENSG00000184647 CDS Human protein_coding chr8:10387121 chr8:10387120 nonsynonymous SNV 0.918 3 20 hm7G_associated_SNPs_30429 0 0 0 1 1 PRSS55 chr8:10387209 5'GT 10387209 Upstream 90bp 27842 chr17 28712232 28712232 1 + C T STAD 28712233 + 28712213 28712253 41 AAGATGGAATCACAAACGGCGCACATTGGTATGATGTGGAA AAGATGGAATCACAAACGGTGCACATTGGTATGATGTGGAA < 41bp 0.495762414570084 0.708001365560005 NA NA prediction 0.416002731120011 Functional Gain - CPD ENSG00000108582 CDS Human protein_coding chr17:28712233 chr17:28712232 synonymous SNV . 0 20 hm7G_associated_SNPs_30433 0 0 1 0 1 CPD chr17:28712254 5'GT 28712254 Upstream 23bp 27843 chr11 68696783 68696783 1 + C T UCEC 68696784 + 68696764 68696804 41 GCCAGAAAGTGCATCCTGGCGGGCGATCACAAGCAGCTGCC GCCAGAAAGTGCATCCTGGTGGGCGATCACAAGCAGCTGCC < 41bp 0.528419544753527 0.736419682446662 NA NA prediction 0.416000275386269 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68696784 chr11:68696783 nonsynonymous SNV 0.656 4 20 hm7G_associated_SNPs_30434 2 0 1 0 1 IGHMBP2 chr11:68696825 5'GT 68696825 Upstream 43bp 27844 chr3 15298550 15298550 1 - G A UCEC 15298549 - 15298529 15298569 41 ATGACTCGGAAACCCAGTCCGTGTCCAGCTTTAGTTCAGGA ATGACTCGGAAACCCAGTCTGTGTCCAGCTTTAGTTCAGGA < 41bp 0.495417057558239 0.707994451966936 NA NA prediction 0.415988903933871 Functional Gain - SH3BP5 ENSG00000131370 CDS Human protein_coding chr3:15298549 chr3:15298550 synonymous SNV . 0 20 hm7G_associated_SNPs_30436 0 0 1 0 1 SH3BP5 chr3:15298620 3'AG 15298620 Downstream 71bp 27845 chr2 23865229 23865229 1 + C T UCEC 23865230 + 23865210 23865250 41 ACAGGGCCATGGGTGACCACGGTGGCCGCCGGGAACCAGCC ACAGGGCCATGGGTGACCATGGTGGCCGCCGGGAACCAGCC < 41bp 0.518553648961295 0.726547843132924 NA NA prediction 0.415988388343259 Functional Gain - KLHL29 ENSG00000119771 CDS Human protein_coding chr2:23865230 chr2:23865229 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30437 0 0 0 0 1 KLHL29 chr2:23865208 3'AG 23865208 Downstream 22bp 27846 chr1 213303156 213303156 1 + G T LUAD 213303157 + 213303137 213303177 41 TAAAGCTGGCTTTAAAAAAGGAAGAAGAAGACGACTATGAA TAAAGCTGGCTTTAAAAAATGAAGAAGAAGACGACTATGAA < 41bp 0.675420554390485 0.883414608192573 NA NA prediction 0.415988107604176 Functional Gain - RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213303157 chr1:213303156 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_30438 0 0 1 0 1 RPS6KC1 chr1:213303232 5'GT 213303232 Upstream 77bp 27847 chrX 130219919 130219919 1 + G A GBM 130219920 + 130219900 130219940 41 GTATGACTTCCACTAACTTGGCCTTGGTGTTTGGATCTGCT GTATGACTTCCACTAACTTAGCCTTGGTGTTTGGATCTGCT < 41bp 0.538398040380331 0.746390383250702 NA NA prediction 0.415984685740742 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130219920 chrX:130219919 synonymous SNV . 0 20 hm7G_associated_SNPs_30440 0 0 0 0 1 ARHGAP36 chrX:130219887 3'AG 130219887 Downstream 33bp 27848 chr17 72345450 72345450 1 + G A rs201490676 72345451 + 72345431 72345471 41 ACTGGGCGGGGCCAGGCCCGGGGCCGGCAGGATCGGGGTGA ACTGGGCGGGGCCAGGCCCAGGGCCGGCAGGATCGGGGTGA < 41bp 0.581456378765944 0.789448594402777 NA NA prediction 0.415984431273665 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345451 chr17:72345450 nonsynonymous SNV 0.966 0 20 hm7G_associated_SNPs_30441 0 0 0 0 1 KIF19 chr17:72345488 5'GT 72345488 Upstream 39bp 27849 chr6 33374248 33374248 1 + G T OV 33374249 + 33374229 33374269 41 CGCTGGGGCTGGTTATCATGGCCCTGAGCAACAAGGTGGGA CGCTGGGGCTGGTTATCATTGCCCTGAGCAACAAGGTGGGA < 41bp 0.358790672105315 0.707991691497943 NA NA prediction 0.415983382995886 Functional Gain - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33374249 chr6:33374248 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_30442 0 0 1 0 1 KIFC1 chr6:33374263 5'GT 33374263 Upstream 16bp 27850 chr19 58551877 58551877 1 + G A SKCM 58551878 + 58551858 58551898 41 TTTCGGTGAGGAGGAAGATGGGAAGAGTCCAAGGTCCCAGA TTTCGGTGAGGAGGAAGATAGGAAGAGTCCAAGGTCCCAGA < 41bp 0.570171862894281 0.778162907462318 NA NA prediction 0.415982089136074 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58551878 chr19:58551877 nonsynonymous SNV 0.819 0 20 hm7G_associated_SNPs_30443 0 0 0 0 2 ZSCAN1 chr19:58551818 3'AG 58551818 Downstream 60bp 27851 chr19 58551877 58551877 1 + G A SKCM 58551878 + 58551858 58551898 41 TTTCGGTGAGGAGGAAGATGGGAAGAGTCCAAGGTCCCAGA TTTCGGTGAGGAGGAAGATAGGAAGAGTCCAAGGTCCCAGA < 41bp 0.570171862894281 0.778162907462318 NA NA prediction 0.415982089136074 Functional Gain - ZSCAN1 ENSG00000152467 CDS Human protein_coding chr19:58551878 chr19:58551877 nonsynonymous SNV 0.819 0 20 hm7G_associated_SNPs_30443 0 0 0 0 2 ZSCAN1 chr19:58551912 5'GT 58551912 Upstream 36bp 27852 chr17 33507662 33507662 1 + C T OV 33507663 + 33507643 33507683 41 AGCTGCGGCAGGCGGCCACCGAGTGCATGTGCAACATGGTG AGCTGCGGCAGGCGGCCACTGAGTGCATGTGCAACATGGTG < 41bp 0.506126585237321 0.714109680793773 NA NA prediction 0.415966191112904 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33507663 chr17:33507662 synonymous SNV . 0 20 hm7G_associated_SNPs_30445 0 0 0 0 2 UNC45B chr17:33507578 3'AG 33507578 Downstream 85bp 27853 chr17 33507662 33507662 1 + C T OV 33507663 + 33507643 33507683 41 AGCTGCGGCAGGCGGCCACCGAGTGCATGTGCAACATGGTG AGCTGCGGCAGGCGGCCACTGAGTGCATGTGCAACATGGTG < 41bp 0.506126585237321 0.714109680793773 NA NA prediction 0.415966191112904 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33507663 chr17:33507662 synonymous SNV . 0 20 hm7G_associated_SNPs_30445 0 0 0 0 2 UNC45B chr17:33507695 5'GT 33507695 Upstream 34bp 27854 chr20 37617507 37617507 1 + G T LUAD 37617508 + 37617488 37617528 41 AGTGCTGGGCCACGAGGTGGGCTACTGCATCCGCTTTGATG AGTGCTGGGCCACGAGGTGTGCTACTGCATCCGCTTTGATG < 41bp 0.623934278158507 0.831916617714434 NA NA prediction 0.415964679111854 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37617508 chr20:37617507 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30446 0 0 1 0 3 DHX35 chr20:37617436 3'AG 37617436 Downstream 72bp 27855 chr20 37617507 37617507 1 + G T LUAD 37617508 + 37617488 37617528 41 AGTGCTGGGCCACGAGGTGGGCTACTGCATCCGCTTTGATG AGTGCTGGGCCACGAGGTGTGCTACTGCATCCGCTTTGATG < 41bp 0.623934278158507 0.831916617714434 NA NA prediction 0.415964679111854 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37617508 chr20:37617507 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30446 0 0 1 0 3 DHX35 chr20:37617456 3'AG 37617456 Downstream 52bp 27856 chr20 37617507 37617507 1 + G T LUAD 37617508 + 37617488 37617528 41 AGTGCTGGGCCACGAGGTGGGCTACTGCATCCGCTTTGATG AGTGCTGGGCCACGAGGTGTGCTACTGCATCCGCTTTGATG < 41bp 0.623934278158507 0.831916617714434 NA NA prediction 0.415964679111854 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37617508 chr20:37617507 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30446 0 0 1 0 3 DHX35 chr20:37617560 5'GT 37617560 Upstream 54bp 27857 chrX 1742137 1742137 1 + G A SKCM 1742138 + 1742118 1742158 41 TGTGAGGGCCAGCGCCCATGGGACAGAGCTCCTGCTGGACA TGTGAGGGCCAGCGCCCATAGGACAGAGCTCCTGCTGGACA < 41bp 0.477427936712615 0.707979887289231 NA NA prediction 0.415959774578461 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1742138 chrX:1742137 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_30448 0 0 0 0 1 ASMT chrX:1742206 5'GT 1742206 Upstream 70bp 27858 chr2 170814949 170814949 1 + C T COAD 170814950 + 170814930 170814970 41 TATTTCTGTTTAATCTAGGCGACAGAAGGCTAGAGAGAGGC TATTTCTGTTTAATCTAGGTGACAGAAGGCTAGAGAGAGGC < 41bp 0.506952463801682 0.714932035484438 NA NA prediction 0.41595914336551 Functional Gain - UBR3 ENSG00000144357 CDS Human protein_coding chr2:170814950 chr2:170814949 stopgain 1.000 1 20 hm7G_associated_SNPs_30449 0 0 1 0 2 UBR3 chr2:170814948 3'AG 170814948 Downstream 2bp 27859 chr2 170814949 170814949 1 + C T COAD 170814950 + 170814930 170814970 41 TATTTCTGTTTAATCTAGGCGACAGAAGGCTAGAGAGAGGC TATTTCTGTTTAATCTAGGTGACAGAAGGCTAGAGAGAGGC < 41bp 0.506952463801682 0.714932035484438 NA NA prediction 0.41595914336551 Functional Gain - UBR3 ENSG00000144357 CDS Human protein_coding chr2:170814950 chr2:170814949 stopgain 1.000 1 20 hm7G_associated_SNPs_30449 0 0 1 0 2 UBR3 chr2:170815036 5'GT 170815036 Upstream 88bp 27860 chr16 312436 312436 1 + C T CESC 312437 + 312417 312457 41 GAATAGCAAGCTCCCTCTGCGGCTGCTCTGTGAAGGGTCTC GAATAGCAAGCTCCCTCTGTGGCTGCTCTGTGAAGGGTCTC < 41bp 0.498630868950496 0.70797917065991 NA NA prediction 0.415958341319821 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:312437 chr16:312436 synonymous SNV . 0 20 hm7G_associated_SNPs_30450 0 0 0 0 1 FAM234A chr16:312423 3'AG 312423 Downstream 14bp 27861 chr16 30770762 30770762 1 - G A rs117306997 30770761 - 30770741 30770781 41 AGCGGCCTCCTTTCAGCATCGACCTCTTCAAAGAGGAACAG AGCGGCCTCCTTTCAGCATTGACCTCTTCAAAGAGGAACAG < 41bp 0.502320801433618 0.710295917855976 NA NA prediction 0.415950232844716 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770761 chr16:30770762 synonymous SNV . 0 20 hm7G_associated_SNPs_30451 0 0 0 0 2 CCDC189 chr16:30770663 5'GT 30770663 Upstream 100bp 27862 chr16 30770762 30770762 1 - G A rs117306997 30770761 - 30770741 30770781 41 AGCGGCCTCCTTTCAGCATCGACCTCTTCAAAGAGGAACAG AGCGGCCTCCTTTCAGCATTGACCTCTTCAAAGAGGAACAG < 41bp 0.502320801433618 0.710295917855976 NA NA prediction 0.415950232844716 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770761 chr16:30770762 synonymous SNV . 0 20 hm7G_associated_SNPs_30451 0 0 0 0 2 CCDC189 chr16:30770779 3'AG 30770779 Downstream 18bp 27863 chr17 35830557 35830557 1 + C T COAD 35830558 + 35830538 35830578 41 GGAGGAAGAGCGCCTTAAACGCACTATGCTCTCAGAAGTTC GGAGGAAGAGCGCCTTAAATGCACTATGCTCTCAGAAGTTC < 41bp 0.518537541095075 0.726512480210619 NA NA prediction 0.415949878231086 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35830558 chr17:35830557 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30452 0 0 0 0 2 TADA2A chr17:35830504 3'AG 35830504 Downstream 54bp 27864 chr17 35830557 35830557 1 + C T COAD 35830558 + 35830538 35830578 41 GGAGGAAGAGCGCCTTAAACGCACTATGCTCTCAGAAGTTC GGAGGAAGAGCGCCTTAAATGCACTATGCTCTCAGAAGTTC < 41bp 0.518537541095075 0.726512480210619 NA NA prediction 0.415949878231086 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35830558 chr17:35830557 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30452 0 0 0 0 2 TADA2A chr17:35830636 5'GT 35830636 Upstream 80bp 27865 chr12 49949426 49949426 1 + C T GBM 49949427 + 49949407 49949447 41 ACACCAGCTCCCTGAGCGGCGACAATACCCTTATGTCCACG ACACCAGCTCCCTGAGCGGTGACAATACCCTTATGTCCACG < 41bp 0.500928167894306 0.708902742150896 NA NA prediction 0.41594914851318 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49949427 chr12:49949426 synonymous SNV . 0 20 hm7G_associated_SNPs_30453 0 0 0 0 1 KCNH3 chr12:49949403 3'AG 49949403 Downstream 24bp 27866 chr10 73047362 73047362 1 + C T COAD 73047363 + 73047343 73047383 41 GCCGCCTTGCAGTGAATGGCGGCTGGTCCAGCTGGGCAGAG GCCGCCTTGCAGTGAATGGTGGCTGGTCCAGCTGGGCAGAG < 41bp 0.488912731484197 0.707971252340797 NA NA prediction 0.415942504681593 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73047363 chr10:73047362 synonymous SNV . 0 20 hm7G_associated_SNPs_30456 0 0 0 0 1 UNC5B chr10:73047355 3'AG 73047355 Downstream 8bp 27867 chr16 14960505 14960505 1 + C T UCEC 14960506 + 14960486 14960526 41 GCAGTTGAGTTCAGGCAGACGGGCTACATGCTGAGATGTTC GCAGTTGAGTTCAGGCAGATGGGCTACATGCTGAGATGTTC < 41bp 0.532754282187163 0.740723656420388 NA NA prediction 0.41593874846645 Functional Gain - NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14960506 chr16:14960505 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_30457 0 0 1 0 2 NOMO1 chr16:14960412 3'AG 14960412 Downstream 94bp 27868 chr16 14960505 14960505 1 + C T UCEC 14960506 + 14960486 14960526 41 GCAGTTGAGTTCAGGCAGACGGGCTACATGCTGAGATGTTC GCAGTTGAGTTCAGGCAGATGGGCTACATGCTGAGATGTTC < 41bp 0.532754282187163 0.740723656420388 NA NA prediction 0.41593874846645 Functional Gain - NOMO1 ENSG00000103512 CDS Human protein_coding chr16:14960506 chr16:14960505 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_30457 0 0 1 0 2 NOMO1 chr16:14960548 5'GT 14960548 Upstream 44bp 27869 chr1 203683366 203683366 1 + C T STAD 203683367 + 203683347 203683387 41 CTGGTGATGGCACAAATGACGGGCCTGCTCTGAAGAAAGCG CTGGTGATGGCACAAATGATGGGCCTGCTCTGAAGAAAGCG < 41bp 0.532830940252076 0.740796927544407 NA NA prediction 0.415931974584662 Functional Gain - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203683367 chr1:203683366 synonymous SNV . 0 20 hm7G_associated_SNPs_30460 0 0 1 0 2 ATP2B4 chr1:203683299 3'AG 203683299 Downstream 68bp 27870 chr1 203683366 203683366 1 + C T STAD 203683367 + 203683347 203683387 41 CTGGTGATGGCACAAATGACGGGCCTGCTCTGAAGAAAGCG CTGGTGATGGCACAAATGATGGGCCTGCTCTGAAGAAAGCG < 41bp 0.532830940252076 0.740796927544407 NA NA prediction 0.415931974584662 Functional Gain - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203683367 chr1:203683366 synonymous SNV . 0 20 hm7G_associated_SNPs_30460 0 0 1 0 2 ATP2B4 chr1:203683405 5'GT 203683405 Upstream 40bp 27871 chr10 101595974 101595974 1 + C T READ 101595975 + 101595955 101595995 41 TGCCTTTGAGCACCAGCAGCGATTTCTGAAACACAATGAGG TGCCTTTGAGCACCAGCAGTGATTTCTGAAACACAATGAGG < 41bp 0.520674574514251 0.72864037687182 NA NA prediction 0.415931604715138 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101595975 chr10:101595974 stopgain 0.983 1 20 hm7G_associated_SNPs_30461 0 0 1 0 1 ABCC2 chr10:101596047 5'GT 101596047 Upstream 74bp 27872 chr12 6964674 6964674 1 + G A BRCA 6964675 + 6964655 6964695 41 CGAGTCTACTTGCACCTCCGGCGGACCCGGCGCCCGGTAGG CGAGTCTACTTGCACCTCCAGCGGACCCGGCGCCCGGTAGG < 41bp 0.526142857367013 0.734108169658244 NA NA prediction 0.415930624582462 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6964675 chr12:6964674 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_30462 0 0 1 0 1 USP5 chr12:6964690 5'GT 6964690 Upstream 17bp 27873 chr12 31106952 31106952 1 + C T rs201615323 31106953 + 31106933 31106973 41 ACTATAAGACTGAGCAGGACGACTGGCTGATCATCTACTTG ACTATAAGACTGAGCAGGATGACTGGCTGATCATCTACTTG < 41bp 0.4989718715637 0.707965160389557 NA NA prediction 0.415930320779114 Functional Gain - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31106953 chr12:31106952 synonymous SNV . 0 20 hm7G_associated_SNPs_30463 0 0 0 0 2 TSPAN11 chr12:31106915 3'AG 31106915 Downstream 38bp 27874 chr12 31106952 31106952 1 + C T rs201615323 31106953 + 31106933 31106973 41 ACTATAAGACTGAGCAGGACGACTGGCTGATCATCTACTTG ACTATAAGACTGAGCAGGATGACTGGCTGATCATCTACTTG < 41bp 0.4989718715637 0.707965160389557 NA NA prediction 0.415930320779114 Functional Gain - TSPAN11 ENSG00000110900 CDS Human protein_coding chr12:31106953 chr12:31106952 synonymous SNV . 0 20 hm7G_associated_SNPs_30463 0 0 0 0 2 TSPAN11 chr12:31107009 5'GT 31107009 Upstream 58bp 27875 chr20 47700588 47700588 1 + C T UCEC 47700589 + 47700569 47700609 41 AAAGAACATCTTTTAGTCTCGATTCCTCTCTTGATTAATCA AAAGAACATCTTTTAGTCTTGATTCCTCTCTTGATTAATCA < 41bp 0.498748773075218 0.707964053549291 NA NA prediction 0.415928107098581 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47700589 chr20:47700588 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30464 0 0 1 0 2 CSE1L chr20:47700563 3'AG 47700563 Downstream 26bp 27876 chr20 47700588 47700588 1 + C T UCEC 47700589 + 47700569 47700609 41 AAAGAACATCTTTTAGTCTCGATTCCTCTCTTGATTAATCA AAAGAACATCTTTTAGTCTTGATTCCTCTCTTGATTAATCA < 41bp 0.498748773075218 0.707964053549291 NA NA prediction 0.415928107098581 Functional Gain - CSE1L ENSG00000124207 CDS Human protein_coding chr20:47700589 chr20:47700588 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30464 0 0 1 0 2 CSE1L chr20:47700623 5'GT 47700623 Upstream 36bp 27877 chr17 47122364 47122364 1 + C T UCEC 47122365 + 47122345 47122385 41 CTTTTTAGATTGCACCACCCGAAACACCTGACTCCAAAGTT CTTTTTAGATTGCACCACCTGAAACACCTGACTCCAAAGTT < 41bp 0.528879835531779 0.73684007781961 NA NA prediction 0.415920484575662 Functional Gain - IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47122365 chr17:47122364 synonymous SNV . 0 20 hm7G_associated_SNPs_30465 0 0 1 0 2 IGF2BP1 chr17:47122353 3'AG 47122353 Downstream 12bp 27878 chr17 47122364 47122364 1 + C T UCEC 47122365 + 47122345 47122385 41 CTTTTTAGATTGCACCACCCGAAACACCTGACTCCAAAGTT CTTTTTAGATTGCACCACCTGAAACACCTGACTCCAAAGTT < 41bp 0.528879835531779 0.73684007781961 NA NA prediction 0.415920484575662 Functional Gain - IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47122365 chr17:47122364 synonymous SNV . 0 20 hm7G_associated_SNPs_30465 0 0 1 0 2 IGF2BP1 chr17:47122427 5'GT 47122427 Upstream 64bp 27879 chr12 109845668 109845668 1 + C T STAD 109845669 + 109845649 109845689 41 GGCAAAGGCTGTTTATGGACGAACGTTTACTTGGCTGGTCA GGCAAAGGCTGTTTATGGATGAACGTTTACTTGGCTGGTCA < 41bp 0.507747554104557 0.715707707370653 NA NA prediction 0.41592030653219 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109845669 chr12:109845668 stopgain 0.971 0 20 hm7G_associated_SNPs_30467 0 0 0 0 2 MYO1H chr12:109845599 3'AG 109845599 Downstream 70bp 27880 chr12 109845668 109845668 1 + C T STAD 109845669 + 109845649 109845689 41 GGCAAAGGCTGTTTATGGACGAACGTTTACTTGGCTGGTCA GGCAAAGGCTGTTTATGGATGAACGTTTACTTGGCTGGTCA < 41bp 0.507747554104557 0.715707707370653 NA NA prediction 0.41592030653219 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109845669 chr12:109845668 stopgain 0.971 0 20 hm7G_associated_SNPs_30467 0 0 0 0 2 MYO1H chr12:109845718 5'GT 109845718 Upstream 51bp 27881 chr2 55187402 55187402 1 + C T UCEC 55187403 + 55187383 55187423 41 GTGGGACCAGGAGATGAAGCGCTGCCGGGCCTTTCAGCTGG GTGGGACCAGGAGATGAAGTGCTGCCGGGCCTTTCAGCTGG < 41bp 0.499778606350689 0.707957220445184 NA NA prediction 0.415914440890369 Functional Gain - EML6 ENSG00000214595 CDS Human protein_coding chr2:55187403 chr2:55187402 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30468 0 0 0 0 2 EML6 chr2:55187356 3'AG 55187356 Downstream 47bp 27882 chr2 55187402 55187402 1 + C T UCEC 55187403 + 55187383 55187423 41 GTGGGACCAGGAGATGAAGCGCTGCCGGGCCTTTCAGCTGG GTGGGACCAGGAGATGAAGTGCTGCCGGGCCTTTCAGCTGG < 41bp 0.499778606350689 0.707957220445184 NA NA prediction 0.415914440890369 Functional Gain - EML6 ENSG00000214595 CDS Human protein_coding chr2:55187403 chr2:55187402 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30468 0 0 0 0 2 EML6 chr2:55187470 5'GT 55187470 Upstream 69bp 27883 chr1 34677980 34677980 1 + C T CESC 34677981 + 34677961 34678001 41 CTAATGGCAGGAGATGGACCGCAGTACCTCTTTCCCCAAGG CTAATGGCAGGAGATGGACTGCAGTACCTCTTTCCCCAAGG < 41bp 0.503355053551148 0.711311371724455 NA NA prediction 0.415912636346613 Functional Gain - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34677981 chr1:34677980 nonsynonymous SNV 0.040 1 20 hm7G_associated_SNPs_30470 0 0 0 0 1 C1orf94 chr1:34678007 5'GT 34678007 Upstream 28bp 27884 chr10 75557316 75557316 1 + G A rs143814161 75557317 + 75557297 75557337 41 CCTCCAGTGGAAGTCGCCGGGCCAGTGCCAGTGGAGGAGCC CCTCCAGTGGAAGTCGCCGAGCCAGTGCCAGTGGAGGAGCC < 41bp 0.491084377656724 0.707951064628519 NA NA prediction 0.415902129257037 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557317 chr10:75557316 synonymous SNV . 0 20 hm7G_associated_SNPs_30472 0 0 1 0 1 ZSWIM8 chr10:75557363 5'GT 75557363 Upstream 48bp 27885 chr20 39987118 39987118 1 + C T rs140814287 39987119 + 39987099 39987139 41 GGTGGGCCTGCCTGAGTCACGCATCTTCACAGTCAACCCCC GGTGGGCCTGCCTGAGTCATGCATCTTCACAGTCAACCCCC < 41bp 0.500831141688781 0.708777207623686 NA NA prediction 0.415892131869809 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39987119 chr20:39987118 nonsynonymous SNV 0.197 3 20 hm7G_associated_SNPs_30474 0 0 1 0 2 LPIN3 chr20:39987079 3'AG 39987079 Downstream 40bp 27886 chr20 39987118 39987118 1 + C T rs140814287 39987119 + 39987099 39987139 41 GGTGGGCCTGCCTGAGTCACGCATCTTCACAGTCAACCCCC GGTGGGCCTGCCTGAGTCATGCATCTTCACAGTCAACCCCC < 41bp 0.500831141688781 0.708777207623686 NA NA prediction 0.415892131869809 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39987119 chr20:39987118 nonsynonymous SNV 0.197 3 20 hm7G_associated_SNPs_30474 0 0 1 0 2 LPIN3 chr20:39987182 5'GT 39987182 Upstream 65bp 27887 chr16 67291482 67291482 1 + G A UCEC 67291483 + 67291463 67291503 41 GGACGTTGTGGGGCACCATGGCTACCACTACTGGAGGGACA GGACGTTGTGGGGCACCATAGCTACCACTACTGGAGGGACA < 41bp 0.55826391883885 0.766207263273398 NA NA prediction 0.415886688869096 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67291483 chr16:67291482 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30475 0 0 1 0 2 SLC9A5 chr16:67291434 3'AG 67291434 Downstream 49bp 27888 chr16 67291482 67291482 1 + G A UCEC 67291483 + 67291463 67291503 41 GGACGTTGTGGGGCACCATGGCTACCACTACTGGAGGGACA GGACGTTGTGGGGCACCATAGCTACCACTACTGGAGGGACA < 41bp 0.55826391883885 0.766207263273398 NA NA prediction 0.415886688869096 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67291483 chr16:67291482 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30475 0 0 1 0 2 SLC9A5 chr16:67291504 5'GT 67291504 Upstream 23bp 27889 chr1 1389751 1389751 1 + C T UCEC 1389752 + 1389732 1389772 41 GGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAAT GGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAAT < 41bp 0.500298078865706 0.708238817177682 NA NA prediction 0.415881476623951 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389752 chr1:1389751 synonymous SNV . 0 20 hm7G_associated_SNPs_30477 0 0 0 0 1 ATAD3C chr1:1389725 3'AG 1389725 Downstream 27bp 27890 chr19 54653309 54653309 1 + C T STAD 54653310 + 54653290 54653330 41 TCCAGGAAGGAACCCAGTGCGGCAGCCCCAACGGGGGCTGG TCCAGGAAGGAACCCAGTGTGGCAGCCCCAACGGGGGCTGG < 41bp 0.510634412739454 0.7185748075803 NA NA prediction 0.415880789681693 Functional Gain - CNOT3 ENSG00000088038 CDS Human protein_coding chr19:54653310 chr19:54653309 nonsynonymous SNV 0.930 0 20 hm7G_associated_SNPs_30478 0 0 1 0 1 CNOT3 chr19:54653295 3'AG 54653295 Downstream 15bp 27891 chr9 133308766 133308766 1 + G A rs113041177 133308767 + 133308747 133308787 41 GCGCTGCTCGCAGGACTGCGGCACGGGCGGCCCCTCTACGC GCGCTGCTCGCAGGACTGCAGCACGGGCGGCCCCTCTACGC < 41bp 0.539481754781964 0.747420447456225 NA NA prediction 0.415877385348521 Functional Gain - HMCN2 ENSG00000148357 CDS Human protein_coding chr9:133308767 chr9:133308766 nonsynonymous SNV 0.064 0 20 hm7G_associated_SNPs_30479 0 0 0 0 1 HMCN2 chr9:133308735 3'AG 133308735 Downstream 32bp 27892 chr22 37707052 37707052 1 + C T PRAD 37707053 + 37707033 37707073 41 CCGCGTGAAGACGTGGAAACGGCGCTGGTTCATCCTGACCG CCGCGTGAAGACGTGGAAATGGCGCTGGTTCATCCTGACCG < 41bp 0.546353104931653 0.754285219317959 NA NA prediction 0.415864228772612 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37707053 chr22:37707052 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30480 0 0 0 0 2 CYTH4 chr22:37707029 3'AG 37707029 Downstream 24bp 27893 chr22 37707052 37707052 1 + C T PRAD 37707053 + 37707033 37707073 41 CCGCGTGAAGACGTGGAAACGGCGCTGGTTCATCCTGACCG CCGCGTGAAGACGTGGAAATGGCGCTGGTTCATCCTGACCG < 41bp 0.546353104931653 0.754285219317959 NA NA prediction 0.415864228772612 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37707053 chr22:37707052 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30480 0 0 0 0 2 CYTH4 chr22:37707105 5'GT 37707105 Upstream 54bp 27894 chr2 71186167 71186167 1 + C T SKCM 71186168 + 71186148 71186188 41 GTCGGGTTTTCAATGGCTCCGGCAAGCCCATTGACAAGGGG GTCGGGTTTTCAATGGCTCTGGCAAGCCCATTGACAAGGGG < 41bp 0.52387506951318 0.731805290810039 NA NA prediction 0.415860442593717 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71186168 chr2:71186167 synonymous SNV . 0 20 hm7G_associated_SNPs_30481 0 0 0 0 2 ATP6V1B1 chr2:71186148 3'AG 71186148 Downstream 20bp 27895 chr2 71186167 71186167 1 + C T SKCM 71186168 + 71186148 71186188 41 GTCGGGTTTTCAATGGCTCCGGCAAGCCCATTGACAAGGGG GTCGGGTTTTCAATGGCTCTGGCAAGCCCATTGACAAGGGG < 41bp 0.52387506951318 0.731805290810039 NA NA prediction 0.415860442593717 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71186168 chr2:71186167 synonymous SNV . 0 20 hm7G_associated_SNPs_30481 0 0 0 0 2 ATP6V1B1 chr2:71186225 5'GT 71186225 Upstream 59bp 27896 chr17 26851556 26851556 1 + C T UCEC 26851557 + 26851537 26851577 41 GCTGCTCGTCATTTGTGTCCGACGGCCCTCCAGAGAGGACA GCTGCTCGTCATTTGTGTCTGACGGCCCTCCAGAGAGGACA < 41bp 0.506136685487469 0.714065858461453 NA NA prediction 0.415858345947968 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851557 chr17:26851556 synonymous SNV . 0 20 hm7G_associated_SNPs_30482 1 0 0 0 1 FOXN1 chr17:26851521 3'AG 26851521 Downstream 36bp 27897 chr18 60230367 60230367 1 + C T SKCM 60230368 + 60230348 60230388 41 CCAGAGCACTGTGTGACCTCGGCTGACCAGGTGTGTGGGGA CCAGAGCACTGTGTGACCTTGGCTGACCAGGTGTGTGGGGA < 41bp 0.498478315699042 0.707927864047704 NA NA prediction 0.415855728095408 Functional Gain - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60230368 chr18:60230367 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_30484 0 0 1 0 1 ZCCHC2 chr18:60230377 5'GT 60230377 Upstream 11bp 27898 chr16 66976576 66976576 1 + C T rs200894407 66976577 + 66976557 66976597 41 GGGCCCCTGTGTACTTCTACGAGTTCCAGCATCAGCCCAGC GGGCCCCTGTGTACTTCTATGAGTTCCAGCATCAGCCCAGC < 41bp 0.50393883239475 0.71186133260861 NA NA prediction 0.415845000427719 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66976577 chr16:66976576 synonymous SNV . 0 20 hm7G_associated_SNPs_30488 0 0 1 0 2 CES2 chr16:66976551 3'AG 66976551 Downstream 26bp 27899 chr16 66976576 66976576 1 + C T rs200894407 66976577 + 66976557 66976597 41 GGGCCCCTGTGTACTTCTACGAGTTCCAGCATCAGCCCAGC GGGCCCCTGTGTACTTCTATGAGTTCCAGCATCAGCCCAGC < 41bp 0.50393883239475 0.71186133260861 NA NA prediction 0.415845000427719 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66976577 chr16:66976576 synonymous SNV . 0 20 hm7G_associated_SNPs_30488 0 0 1 0 2 CES2 chr16:66976640 5'GT 66976640 Upstream 65bp 27900 chr20 31625373 31625373 1 + G A LUSC 31625374 + 31625354 31625394 41 CTGCTGCCCCATAGCCTGTGGTGCAGCAGCAAAAGGGCAAA CTGCTGCCCCATAGCCTGTAGTGCAGCAGCAAAAGGGCAAA < 41bp 0.532693667273199 0.740614746128945 NA NA prediction 0.41584215771149 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31625374 chr20:31625373 synonymous SNV . 0 20 hm7G_associated_SNPs_30489 0 0 0 0 1 BPIFB6 chr20:31625368 3'AG 31625368 Downstream 6bp 27901 chr11 988608 988608 1 + C T GBM 988609 + 988589 988629 41 ACCTCCTCTACGCCATGTGCGACCGCAGCAACGCCCCACAG ACCTCCTCTACGCCATGTGTGACCGCAGCAACGCCCCACAG < 41bp 0.527664240564264 0.735583458951825 NA NA prediction 0.415838436775122 Functional Gain - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988609 chr11:988608 synonymous SNV . 0 20 hm7G_associated_SNPs_30490 0 0 1 0 2 AP2A2 chr11:988552 3'AG 988552 Downstream 57bp 27902 chr11 988608 988608 1 + C T GBM 988609 + 988589 988629 41 ACCTCCTCTACGCCATGTGCGACCGCAGCAACGCCCCACAG ACCTCCTCTACGCCATGTGTGACCGCAGCAACGCCCCACAG < 41bp 0.527664240564264 0.735583458951825 NA NA prediction 0.415838436775122 Functional Gain - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:988609 chr11:988608 synonymous SNV . 0 20 hm7G_associated_SNPs_30490 0 0 1 0 2 AP2A2 chr11:988689 5'GT 988689 Upstream 82bp 27903 chr8 27297825 27297825 1 + G A COAD 27297826 + 27297806 27297846 41 GGAGAACAAGGATGTCATCGGGGTGCTGGAGAAAGGAGACC GGAGAACAAGGATGTCATCAGGGTGCTGGAGAAAGGAGACC < 41bp 0.517197723236331 0.725116362821525 NA NA prediction 0.415837279170389 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27297826 chr8:27297825 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_30491 0 0 1 0 1 PTK2B chr8:27297754 3'AG 27297754 Downstream 72bp 27904 chr13 50080832 50080832 1 + C T COAD 50080833 + 50080813 50080853 41 CACTCTGCCCCAAAGATGTCGAATATAATGTCCTATACTTT CACTCTGCCCCAAAGATGTTGAATATAATGTCCTATACTTT < 41bp 0.509553021312857 0.717471638559798 NA NA prediction 0.415837234493882 Functional Gain - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50080833 chr13:50080832 synonymous SNV . 0 20 hm7G_associated_SNPs_30492 0 0 0 0 2 PHF11;SETDB2-PHF11 chr13:50080771 3'AG 50080771 Downstream 62bp 27905 chr13 50080832 50080832 1 + C T COAD 50080833 + 50080813 50080853 41 CACTCTGCCCCAAAGATGTCGAATATAATGTCCTATACTTT CACTCTGCCCCAAAGATGTTGAATATAATGTCCTATACTTT < 41bp 0.509553021312857 0.717471638559798 NA NA prediction 0.415837234493882 Functional Gain - PHF11;SETDB2-PHF11 ENSG00000136147 CDS Human protein_coding chr13:50080833 chr13:50080832 synonymous SNV . 0 20 hm7G_associated_SNPs_30492 0 0 0 0 2 PHF11;SETDB2-PHF11 chr13:50080892 5'GT 50080892 Upstream 61bp 27906 chr10 70986987 70986987 1 + C T LGG 70986988 + 70986968 70987008 41 CAGGTTCCTGTATCACATGCGGCTCTCCGATGACACCCTTT CAGGTTCCTGTATCACATGTGGCTCTCCGATGACACCCTTT < 41bp 0.52586448639037 0.733780981046864 NA NA prediction 0.415832989312988 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:70986988 chr10:70986987 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_30493 0 0 0 0 1 HKDC1 chr10:70986963 3'AG 70986963 Downstream 25bp 27907 chr2 239051488 239051488 1 + G T COAD 239051489 + 239051469 239051509 41 GGAGGTCCTGGTGGTGGTGGGCGGGCAGGCGCTGGAGGAGG GGAGGTCCTGGTGGTGGTGTGCGGGCAGGCGCTGGAGGAGG < 41bp 0.703361081480979 0.911276668003404 NA NA prediction 0.415831173044851 Functional Gain - KLHL30 ENSG00000168427 CDS Human protein_coding chr2:239051489 chr2:239051488 nonsynonymous SNV 0.970 3 20 hm7G_associated_SNPs_30495 0 0 0 0 2 KLHL30 chr2:239051440 3'AG 239051440 Downstream 49bp 27908 chr2 239051488 239051488 1 + G T COAD 239051489 + 239051469 239051509 41 GGAGGTCCTGGTGGTGGTGGGCGGGCAGGCGCTGGAGGAGG GGAGGTCCTGGTGGTGGTGTGCGGGCAGGCGCTGGAGGAGG < 41bp 0.703361081480979 0.911276668003404 NA NA prediction 0.415831173044851 Functional Gain - KLHL30 ENSG00000168427 CDS Human protein_coding chr2:239051489 chr2:239051488 nonsynonymous SNV 0.970 3 20 hm7G_associated_SNPs_30495 0 0 0 0 2 KLHL30 chr2:239051572 5'GT 239051572 Upstream 85bp 27909 chr1 15675593 15675593 1 + C T COAD 15675594 + 15675574 15675614 41 GCAAAGGAAGCCTTGGAGTCGGAAAAGAGAAAAGTTCAGGA GCAAAGGAAGCCTTGGAGTTGGAAAAGAGAAAAGTTCAGGA < 41bp 0.503330468343615 0.711244297551225 NA NA prediction 0.41582765841522 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15675594 chr1:15675593 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30497 0 0 0 0 2 FHAD1 chr1:15675538 3'AG 15675538 Downstream 56bp 27910 chr1 15675593 15675593 1 + C T COAD 15675594 + 15675574 15675614 41 GCAAAGGAAGCCTTGGAGTCGGAAAAGAGAAAAGTTCAGGA GCAAAGGAAGCCTTGGAGTTGGAAAAGAGAAAAGTTCAGGA < 41bp 0.503330468343615 0.711244297551225 NA NA prediction 0.41582765841522 Functional Gain - FHAD1 ENSG00000142621 CDS Human protein_coding chr1:15675594 chr1:15675593 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30497 0 0 0 0 2 FHAD1 chr1:15675645 5'GT 15675645 Upstream 53bp 27911 chr2 26505777 26505777 1 + C T PRAD 26505778 + 26505758 26505798 41 CTGGCCATGGGTTATAAGCCGAAGGCATATTTGAGGTAAAG CTGGCCATGGGTTATAAGCTGAAGGCATATTTGAGGTAAAG < 41bp 0.504126090543768 0.712039917929406 NA NA prediction 0.415827654771278 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26505778 chr2:26505777 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_30498 0 0 1 0 2 HADHB chr2:26505713 3'AG 26505713 Downstream 65bp 27912 chr2 26505777 26505777 1 + C T PRAD 26505778 + 26505758 26505798 41 CTGGCCATGGGTTATAAGCCGAAGGCATATTTGAGGTAAAG CTGGCCATGGGTTATAAGCTGAAGGCATATTTGAGGTAAAG < 41bp 0.504126090543768 0.712039917929406 NA NA prediction 0.415827654771278 Functional Gain - HADHB ENSG00000138029 CDS Human protein_coding chr2:26505778 chr2:26505777 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_30498 0 0 1 0 2 HADHB chr2:26505792 5'GT 26505792 Upstream 16bp 27913 chr10 26559616 26559616 1 + C T PRAD 26559617 + 26559597 26559637 41 CAGCTGGAACCACCGTGTACGGAGCATTTGACCCCCTCTTA CAGCTGGAACCACCGTGTATGGAGCATTTGACCCCCTCTTA < 41bp 0.534849919281029 0.742761576989714 NA NA prediction 0.415823315417371 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26559617 chr10:26559616 synonymous SNV . 0 20 hm7G_associated_SNPs_30500 0 0 0 0 2 GAD2 chr10:26559569 3'AG 26559569 Downstream 48bp 27914 chr10 26559616 26559616 1 + C T PRAD 26559617 + 26559597 26559637 41 CAGCTGGAACCACCGTGTACGGAGCATTTGACCCCCTCTTA CAGCTGGAACCACCGTGTATGGAGCATTTGACCCCCTCTTA < 41bp 0.534849919281029 0.742761576989714 NA NA prediction 0.415823315417371 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26559617 chr10:26559616 synonymous SNV . 0 20 hm7G_associated_SNPs_30500 0 0 0 0 2 GAD2 chr10:26559685 5'GT 26559685 Upstream 70bp 27915 chr10 101122095 101122095 1 + C T COAD 101122096 + 101122076 101122116 41 GAGAAGAACAAGAAGGCCCCGGAACACTACCTCTACCAGCG GAGAAGAACAAGAAGGCCCTGGAACACTACCTCTACCAGCG < 41bp 0.533210749729559 0.741117274407074 NA NA prediction 0.41581304935503 Functional Gain - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101122096 chr10:101122095 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_30504 0 0 1 0 1 CNNM1 chr10:101122153 5'GT 101122153 Upstream 59bp 27916 chr19 55086410 55086410 1 + C T STAD 55086411 + 55086391 55086431 41 GGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTACAGGTGCT GGGCCCCGTGAGCCCGAGTTGCAGGTGGTCGTACAGGTGCT < 41bp 0.515373548311286 0.723278061194638 NA NA prediction 0.415809025766705 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086411 chr19:55086410 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_30505 0 0 0 0 1 LILRA2 chr19:55086500 5'GT 55086500 Upstream 91bp 27917 chr22 18978331 18978331 1 + C T UCEC 18978332 + 18978312 18978352 41 CCCGATCAGCAGGTGAAAGCGACACCCTGATGACACTGGCT CCCGATCAGCAGGTGAAAGTGACACCCTGATGACACTGGCT < 41bp 0.512486893907294 0.720386508120782 NA NA prediction 0.415799228426975 Functional Gain - DGCR5 ENSG00000237517 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:18978332 chr22:18978331 . . 0 20 hm7G_associated_SNPs_30506 0 0 0 0 1 DGCR5 chr22:18978233 3'AG 18978233 Downstream 99bp 27918 chr17 59534957 59534957 1 + G T HNSC 59534958 + 59534938 59534978 41 TCTGGAAGAAGTTCCACGAGGCGGGCACCGAGATGATCATC TCTGGAAGAAGTTCCACGATGCGGGCACCGAGATGATCATC < 41bp 0.70834686089387 0.91624560455137 NA NA prediction 0.415797487314999 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59534958 chr17:59534957 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30507 0 0 0 0 2 TBX4 chr17:59534898 3'AG 59534898 Downstream 60bp 27919 chr17 59534957 59534957 1 + G T HNSC 59534958 + 59534938 59534978 41 TCTGGAAGAAGTTCCACGAGGCGGGCACCGAGATGATCATC TCTGGAAGAAGTTCCACGATGCGGGCACCGAGATGATCATC < 41bp 0.70834686089387 0.91624560455137 NA NA prediction 0.415797487314999 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59534958 chr17:59534957 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30507 0 0 0 0 2 TBX4 chr17:59534992 5'GT 59534992 Upstream 36bp 27920 chr16 89259946 89259946 1 + G A COAD 89259947 + 89259927 89259967 41 GGGCAAGGGGCTGCTGCACGGCCCCCAGGACGACCTTCGAG GGGCAAGGGGCTGCTGCACAGCCCCCAGGACGACCTTCGAG < 41bp 0.471748250336407 0.707896468785615 NA NA prediction 0.41579293757123 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89259947 chr16:89259946 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_30508 0 0 0 0 2 CDH15 chr16:89259878 3'AG 89259878 Downstream 69bp 27921 chr16 89259946 89259946 1 + G A COAD 89259947 + 89259927 89259967 41 GGGCAAGGGGCTGCTGCACGGCCCCCAGGACGACCTTCGAG GGGCAAGGGGCTGCTGCACAGCCCCCAGGACGACCTTCGAG < 41bp 0.471748250336407 0.707896468785615 NA NA prediction 0.41579293757123 Functional Gain - CDH15 ENSG00000129910 CDS Human protein_coding chr16:89259947 chr16:89259946 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_30508 0 0 0 0 2 CDH15 chr16:89260014 5'GT 89260014 Upstream 69bp 27922 chr17 80882922 80882922 1 + C T rs200557085 80882923 + 80882903 80882943 41 AGGCTTCCTTCTGAAAGGCCGGCTCCAGCAGGTGAGGCTGG AGGCTTCCTTCTGAAAGGCTGGCTCCAGCAGGTGAGGCTGG < 41bp 0.497808077235977 0.707896388160589 NA NA prediction 0.415792776321177 Functional Gain - TBCD ENSG00000141556 CDS Human protein_coding chr17:80882923 chr17:80882922 nonsynonymous SNV 0.015 3 20 hm7G_associated_SNPs_30509 0 0 1 0 1 TBCD chr17:80882933 5'GT 80882933 Upstream 12bp 27923 chr3 51979111 51979111 1 + G A BLCA 51979112 + 51979092 51979132 41 AGGCCCTGAAAGGCCCCACGGATGGTGGCCAAAGCCTGGAG AGGCCCTGAAAGGCCCCACAGATGGTGGCCAAAGCCTGGAG < 41bp 0.523964782476888 0.731859738534869 NA NA prediction 0.41578991211596 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979112 chr3:51979111 synonymous SNV . 0 20 hm7G_associated_SNPs_30510 0 0 1 0 1 PARP3 chr3:51979014 3'AG 51979014 Downstream 98bp 27924 chr5 126746147 126746147 1 + C T rs35550094 126746148 + 126746128 126746168 41 AGACCTGCCAGTGTGTCAACGGAGGGAAGTGTTACCACGTG AGACCTGCCAGTGTGTCAATGGAGGGAAGTGTTACCACGTG < 41bp 0.519708241295742 0.727601736176736 NA NA prediction 0.415786989761989 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126746148 chr5:126746147 synonymous SNV . 0 20 hm7G_associated_SNPs_30511 1 0 0 0 1 MEGF10 chr5:126746081 3'AG 126746081 Downstream 67bp 27925 chr16 14024648 14024648 1 + C T UCEC 14024649 + 14024629 14024669 41 TCAGGATTTGAAGATATTACGAACTTTGCTGCAGTATCTCT TCAGGATTTGAAGATATTATGAACTTTGCTGCAGTATCTCT < 41bp 0.517873597755947 0.725766962304314 NA NA prediction 0.415786729096734 Functional Gain - ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14024649 chr16:14024648 stopgain 0.980 1 20 hm7G_associated_SNPs_30512 0 0 1 0 2 ERCC4 chr16:14024567 3'AG 14024567 Downstream 82bp 27926 chr16 14024648 14024648 1 + C T UCEC 14024649 + 14024629 14024669 41 TCAGGATTTGAAGATATTACGAACTTTGCTGCAGTATCTCT TCAGGATTTGAAGATATTATGAACTTTGCTGCAGTATCTCT < 41bp 0.517873597755947 0.725766962304314 NA NA prediction 0.415786729096734 Functional Gain - ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14024649 chr16:14024648 stopgain 0.980 1 20 hm7G_associated_SNPs_30512 0 0 1 0 2 ERCC4 chr16:14024747 5'GT 14024747 Upstream 100bp 27927 chr11 9534059 9534059 1 + C T COAD 9534060 + 9534040 9534080 41 CAGGTGTAGAAGGGGACGACGTTGTTTCTACACAAGTAGCC CAGGTGTAGAAGGGGACGATGTTGTTTCTACACAAGTAGCC < 41bp 0.52097857262897 0.728871861578964 NA NA prediction 0.415786577899989 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9534060 chr11:9534059 synonymous SNV . 0 20 hm7G_associated_SNPs_30513 0 0 1 0 2 ZNF143 chr11:9533995 3'AG 9533995 Downstream 65bp 27928 chr11 9534059 9534059 1 + C T COAD 9534060 + 9534040 9534080 41 CAGGTGTAGAAGGGGACGACGTTGTTTCTACACAAGTAGCC CAGGTGTAGAAGGGGACGATGTTGTTTCTACACAAGTAGCC < 41bp 0.52097857262897 0.728871861578964 NA NA prediction 0.415786577899989 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9534060 chr11:9534059 synonymous SNV . 0 20 hm7G_associated_SNPs_30513 0 0 1 0 2 ZNF143 chr11:9534143 5'GT 9534143 Upstream 85bp 27929 chr19 8436168 8436168 1 + G A SKCM 8436169 + 8436149 8436189 41 AGGTGCATAGCATCACGGGGGACCGCAACAGCCGCCTGGCC AGGTGCATAGCATCACGGGAGACCGCAACAGCCGCCTGGCC < 41bp 0.545318870069132 0.753208235384251 NA NA prediction 0.415778730630237 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436169 chr19:8436168 synonymous SNV . 0 20 hm7G_associated_SNPs_30515 0 0 1 0 1 ANGPTL4 chr19:8436125 3'AG 8436125 Downstream 44bp 27930 chr1 151630876 151630876 1 + C T UCEC 151630877 + 151630857 151630897 41 ACAATTAGATGCCCGACGTCGGGGATTGGAAGAATATCTAG ACAATTAGATGCCCGACGTTGGGGATTGGAAGAATATCTAG < 41bp 0.508270888551449 0.716157602081993 NA NA prediction 0.415773427061089 Functional Gain - SNX27 ENSG00000143376 CDS Human protein_coding chr1:151630877 chr1:151630876 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_30517 0 0 1 0 1 SNX27 chr1:151630903 5'GT 151630903 Upstream 28bp 27931 chr9 132632069 132632069 1 + G A LUAD 132632070 + 132632050 132632090 41 GCCAAGCCAGGCGCCTGTGGGGACAGCTATGCCGCCCAGGG GCCAAGCCAGGCGCCTGTGAGGACAGCTATGCCGCCCAGGG < 41bp 0.556231347552486 0.764117909070082 NA NA prediction 0.415773123035194 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132632070 chr9:132632069 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_30518 0 0 1 0 1 USP20 chr9:132632123 5'GT 132632123 Upstream 55bp 27932 chr1 10211398 10211398 1 + C T STAD 10211399 + 10211379 10211419 41 TTCAGATACTCTCCCCAGGCGCTTTATGAGCCCTGTACTCA TTCAGATACTCTCCCCAGGTGCTTTATGAGCCCTGTACTCA < 41bp 0.495572917469007 0.707885902455523 NA NA prediction 0.415771804911046 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10211399 chr1:10211398 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_30519 0 0 1 0 1 UBE4B chr1:10211384 3'AG 10211384 Downstream 15bp 27933 chr14 105965006 105965006 1 + G A UCEC 105965007 + 105964987 105965027 41 GCCGCGCGGCGGGCCTCTCGGGAGGCTGTGGAAAAGGAGCT GCCGCGCGGCGGGCCTCTCAGGAGGCTGTGGAAAAGGAGCT < 41bp 0.54639634914755 0.75428160829855 NA NA prediction 0.415770518302001 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105965007 chr14:105965006 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_30520 0 0 1 0 1 C14orf80 chr14:105964954 3'AG 105964954 Downstream 53bp 27934 chr16 28943874 28943874 1 + C T GBM 28943875 + 28943855 28943895 41 GGCTTCTACCTGTGCCAGCCGGGGCCCCCCTCTGAGAAGGC GGCTTCTACCTGTGCCAGCTGGGGCCCCCCTCTGAGAAGGC < 41bp 0.506331389277116 0.714215113364969 NA NA prediction 0.415767448175706 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28943875 chr16:28943874 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_30522 0 0 0 0 1 CD19 chr16:28943933 5'GT 28943933 Upstream 60bp 27935 chr1 1387764 1387764 1 + G A rs9793256 1387765 + 1387745 1387785 41 GGCGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTG GGCGGCTGGCACCTTGTTTAGGGAAGGATTCCGTGCCTTTG < 41bp 0.549657363497136 0.757540325783454 NA NA prediction 0.415765924572635 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387765 chr1:1387764 nonsynonymous SNV 0.792 5 20 hm7G_associated_SNPs_30523 0 0 0 0 2 ATAD3C chr1:1387745 3'AG 1387745 Downstream 20bp 27936 chr1 1387764 1387764 1 + G A rs9793256 1387765 + 1387745 1387785 41 GGCGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTG GGCGGCTGGCACCTTGTTTAGGGAAGGATTCCGTGCCTTTG < 41bp 0.549657363497136 0.757540325783454 NA NA prediction 0.415765924572635 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387765 chr1:1387764 nonsynonymous SNV 0.792 5 20 hm7G_associated_SNPs_30523 0 0 0 0 2 ATAD3C chr1:1387814 5'GT 1387814 Upstream 51bp 27937 chr9 126794764 126794764 1 + G A SKCM 126794765 + 126794745 126794785 41 GGCAGGAAAACACGGGCGTGGACAAGTCGACAGACGCGGCG GGCAGGAAAACACGGGCGTAGACAAGTCGACAGACGCGGCG < 41bp 0.492791402014881 0.707880373249536 NA NA prediction 0.415760746499073 Functional Gain - LHX2 ENSG00000106689 CDS Human protein_coding chr9:126794765 chr9:126794764 synonymous SNV . 0 20 hm7G_associated_SNPs_30525 0 0 0 0 1 LHX2 chr9:126794699 3'AG 126794699 Downstream 66bp 27938 chr1 243433519 243433519 1 + C T STAD 243433520 + 243433500 243433540 41 CCAGTGTGGGAAATGAGGACGCCAGGACAGCCTGGCCCGAA CCAGTGTGGGAAATGAGGATGCCAGGACAGCCTGGCCCGAA < 41bp 0.524025274067162 0.731904772014712 NA NA prediction 0.415758995895098 Functional Gain - SDCCAG8 ENSG00000054282 CDS Human protein_coding chr1:243433520 chr1:243433519 synonymous SNV . 0 20 hm7G_associated_SNPs_30526 0 0 1 0 1 SDCCAG8 chr1:243433559 5'GT 243433559 Upstream 41bp 27939 chr16 67168349 67168349 1 + C T STAD 67168350 + 67168330 67168370 41 AACTGGACCTGCAGGTTTACGACTTCGCCTACTTGCTGCAG AACTGGACCTGCAGGTTTATGACTTCGCCTACTTGCTGCAG < 41bp 0.520549547569436 0.728427168617326 NA NA prediction 0.41575524209578 Functional Gain - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67168350 chr16:67168349 stopgain 0.998 1 20 hm7G_associated_SNPs_30528 0 0 1 0 2 C16orf70 chr16:67168258 3'AG 67168258 Downstream 92bp 27940 chr16 67168349 67168349 1 + C T STAD 67168350 + 67168330 67168370 41 AACTGGACCTGCAGGTTTACGACTTCGCCTACTTGCTGCAG AACTGGACCTGCAGGTTTATGACTTCGCCTACTTGCTGCAG < 41bp 0.520549547569436 0.728427168617326 NA NA prediction 0.41575524209578 Functional Gain - C16orf70 ENSG00000125149 CDS Human protein_coding chr16:67168350 chr16:67168349 stopgain 0.998 1 20 hm7G_associated_SNPs_30528 0 0 1 0 2 C16orf70 chr16:67168370 5'GT 67168370 Upstream 22bp 27941 chr4 995919 995919 1 + G A rs6830825 995920 + 995900 995940 41 TGCCACAGCCGTGGAGGGCGGACGTGACCTACGCGGCCATG TGCCACAGCCGTGGAGGGCAGACGTGACCTACGCGGCCATG < 41bp 0.489727200284983 0.707877450705478 NA NA prediction 0.415754901410956 Functional Gain - IDUA ENSG00000127415 CDS Human protein_coding chr4:995920 chr4:995919 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_30529 0 0 1 0 1 IDUA chr4:995949 5'GT 995949 Upstream 31bp 27942 chr16 1823740 1823740 1 + G A rs201737681 1823741 + 1823721 1823761 41 CCGGTGCCGACGTCCTGATGGAGGCCCTGGAGGCCCTGGGC CCGGTGCCGACGTCCTGATAGAGGCCCTGGAGGCCCTGGGC < 41bp 0.562937197420293 0.77081021507534 NA NA prediction 0.415746035310094 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1823741 chr16:1823740 nonsynonymous SNV 0.940 0 20 hm7G_associated_SNPs_30530 0 0 1 0 1 EME2 chr16:1823706 3'AG 1823706 Downstream 35bp 27943 chr17 3561332 3561332 1 + G A COAD 3561333 + 3561313 3561353 41 CGTGTCCTGGCCTGCCATCGGCTTCCTGGTGCTCGCGTGGC CGTGTCCTGGCCTGCCATCAGCTTCCTGGTGCTCGCGTGGC < 41bp 0.563460055513639 0.771328385887522 NA NA prediction 0.415736660747765 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3561333 chr17:3561332 nonsynonymous SNV 0.014 1 20 hm7G_associated_SNPs_30531 0 0 0 0 1 CTNS chr17:3561299 3'AG 3561299 Downstream 34bp 27944 chr2 220473343 220473343 1 + G A KIRC 220473344 + 220473324 220473364 41 GTTGGTGTGTCCCCTGGAGGGGCCTGAGGGCGTACGGGGCA GTTGGTGTGTCCCCTGGAGAGGCCTGAGGGCGTACGGGGCA < 41bp 0.567363451542069 0.775229871101482 NA NA prediction 0.415732839118826 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220473344 chr2:220473343 nonsynonymous SNV 0.476 0 20 hm7G_associated_SNPs_30533 0 0 1 0 1 STK11IP chr2:220473305 3'AG 220473305 Downstream 39bp 27945 chr17 1635692 1635692 1 + C T COAD 1635693 + 1635673 1635713 41 CATCGCCCTCATCTGCCTGCGCATTGGACAGGAGATGGTCC CATCGCCCTCATCTGCCTGTGCATTGGACAGGAGATGGTCC < 41bp 0.51748481410672 0.725348867858358 NA NA prediction 0.415728107503276 Functional Gain - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1635693 chr17:1635692 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_30534 0 0 0 0 2 WDR81 chr17:1635619 3'AG 1635619 Downstream 74bp 27946 chr17 1635692 1635692 1 + C T COAD 1635693 + 1635673 1635713 41 CATCGCCCTCATCTGCCTGCGCATTGGACAGGAGATGGTCC CATCGCCCTCATCTGCCTGTGCATTGGACAGGAGATGGTCC < 41bp 0.51748481410672 0.725348867858358 NA NA prediction 0.415728107503276 Functional Gain - WDR81 ENSG00000167716 CDS Human protein_coding chr17:1635693 chr17:1635692 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_30534 0 0 0 0 2 WDR81 chr17:1635784 5'GT 1635784 Upstream 93bp 27947 chr13 102220101 102220101 1 + G T STAD 102220102 + 102220082 102220122 41 TGTGACCAGGGATGGTATGGGGATGCTTGCCAGTACCCAAC TGTGACCAGGGATGGTATGTGGATGCTTGCCAGTACCCAAC < 41bp 0.471035531539243 0.707863351107599 NA NA prediction 0.415726702215198 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102220102 chr13:102220101 nonsynonymous SNV 0.697 5 20 hm7G_associated_SNPs_30535 0 0 0 0 2 ITGBL1 chr13:102220050 3'AG 102220050 Downstream 52bp 27948 chr13 102220101 102220101 1 + G T STAD 102220102 + 102220082 102220122 41 TGTGACCAGGGATGGTATGGGGATGCTTGCCAGTACCCAAC TGTGACCAGGGATGGTATGTGGATGCTTGCCAGTACCCAAC < 41bp 0.471035531539243 0.707863351107599 NA NA prediction 0.415726702215198 Functional Gain - ITGBL1 ENSG00000198542 CDS Human protein_coding chr13:102220102 chr13:102220101 nonsynonymous SNV 0.697 5 20 hm7G_associated_SNPs_30535 0 0 0 0 2 ITGBL1 chr13:102220196 5'GT 102220196 Upstream 96bp 27949 chr16 84228103 84228103 1 + G A rs146229540 84228104 + 84228084 84228124 41 ATGGGGTGGTCTGCCCTGCGGGCACTGCGAATAGCAAGACG ATGGGGTGGTCTGCCCTGCAGGCACTGCGAATAGCAAGACG < 41bp 0.467544213970534 0.707863347834064 NA NA prediction 0.415726695668127 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228104 chr16:84228103 synonymous SNV . 0 20 hm7G_associated_SNPs_30536 0 0 0 0 2 ADAD2 chr16:84228048 3'AG 84228048 Downstream 56bp 27950 chr16 84228103 84228103 1 + G A rs146229540 84228104 + 84228084 84228124 41 ATGGGGTGGTCTGCCCTGCGGGCACTGCGAATAGCAAGACG ATGGGGTGGTCTGCCCTGCAGGCACTGCGAATAGCAAGACG < 41bp 0.467544213970534 0.707863347834064 NA NA prediction 0.415726695668127 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228104 chr16:84228103 synonymous SNV . 0 20 hm7G_associated_SNPs_30536 0 0 0 0 2 ADAD2 chr16:84228188 5'GT 84228188 Upstream 86bp 27951 chrX 9912900 9912900 1 + C T UCEC 9912901 + 9912881 9912921 41 GCTGTCAGGCCGCCTGGCCCGGGTGGAGAATGCCCTCAATA GCTGTCAGGCCGCCTGGCCTGGGTGGAGAATGCCCTCAATA < 41bp 0.524030890110899 0.731893655004068 NA NA prediction 0.415725529786337 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9912901 chrX:9912900 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30537 0 0 0 0 1 SHROOM2 chrX:9912953 5'GT 9912953 Upstream 54bp 27952 chr2 74315002 74315002 1 + C T CESC 74315003 + 74314983 74315023 41 GAAGCTACTCTGCCTGGTGCGGCACCGGGCAGGCCACCACT GAAGCTACTCTGCCTGGTGTGGCACCGGGCAGGCCACCACT < 41bp 0.521027182770558 0.728886576452157 NA NA prediction 0.415718787363199 Functional Gain - TET3 ENSG00000187605 CDS Human protein_coding chr2:74315003 chr2:74315002 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_30539 0 0 1 0 1 TET3 chr2:74314957 3'AG 74314957 Downstream 46bp 27953 chr22 50582601 50582601 1 + C T GBM 50582602 + 50582582 50582622 41 TGCTGACCTCGTGTGTCTGCGGCTGCACGAGAGCAAGGTGC TGCTGACCTCGTGTGTCTGTGGCTGCACGAGAGCAAGGTGC < 41bp 0.530982937708518 0.738841321505904 NA NA prediction 0.415716767594773 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50582602 chr22:50582601 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_30541 0 0 0 0 2 MOV10L1 chr22:50582526 3'AG 50582526 Downstream 76bp 27954 chr22 50582601 50582601 1 + C T GBM 50582602 + 50582582 50582622 41 TGCTGACCTCGTGTGTCTGCGGCTGCACGAGAGCAAGGTGC TGCTGACCTCGTGTGTCTGTGGCTGCACGAGAGCAAGGTGC < 41bp 0.530982937708518 0.738841321505904 NA NA prediction 0.415716767594773 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50582602 chr22:50582601 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_30541 0 0 0 0 2 MOV10L1 chr22:50582672 5'GT 50582672 Upstream 72bp 27955 chr22 23503121 23503121 1 + G A rs5759611 23503122 + 23503102 23503142 41 CCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGG CCCTGGCATTCGAGCAGTCAGTGCTGCAGGACCTGGAGAGG < 41bp 0.547272329646046 0.75513038186908 NA NA prediction 0.415716104446069 Functional Gain - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503122 chr22:23503121 synonymous SNV . 0 20 hm7G_associated_SNPs_30542 0 0 0 0 2 RAB36 chr22:23503066 3'AG 23503066 Downstream 56bp 27956 chr22 23503121 23503121 1 + G A rs5759611 23503122 + 23503102 23503142 41 CCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGG CCCTGGCATTCGAGCAGTCAGTGCTGCAGGACCTGGAGAGG < 41bp 0.547272329646046 0.75513038186908 NA NA prediction 0.415716104446069 Functional Gain - RAB36 ENSG00000100228 CDS Human protein_coding chr22:23503122 chr22:23503121 synonymous SNV . 0 20 hm7G_associated_SNPs_30542 0 0 0 0 2 RAB36 chr22:23503185 5'GT 23503185 Upstream 65bp 27957 chr1 11733409 11733409 1 + G A UCEC 11733410 + 11733390 11733430 41 CGGCTGACTACTTCGTGTTGGCCTCCTTCGAGCCCCCACCT CGGCTGACTACTTCGTGTTAGCCTCCTTCGAGCCCCCACCT < 41bp 0.507425729259472 0.715281342684954 NA NA prediction 0.415711226850964 Functional Gain - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11733410 chr1:11733409 synonymous SNV . 0 20 hm7G_associated_SNPs_30544 0 0 1 0 2 FBXO6 chr1:11733334 3'AG 11733334 Downstream 76bp 27958 chr1 11733409 11733409 1 + G A UCEC 11733410 + 11733390 11733430 41 CGGCTGACTACTTCGTGTTGGCCTCCTTCGAGCCCCCACCT CGGCTGACTACTTCGTGTTAGCCTCCTTCGAGCCCCCACCT < 41bp 0.507425729259472 0.715281342684954 NA NA prediction 0.415711226850964 Functional Gain - FBXO6 ENSG00000116663 CDS Human protein_coding chr1:11733410 chr1:11733409 synonymous SNV . 0 20 hm7G_associated_SNPs_30544 0 0 1 0 2 FBXO6 chr1:11733469 5'GT 11733469 Upstream 61bp 27959 chr2 27560121 27560121 1 - G A COAD 27560120 - 27560100 27560140 41 TGAAGATGGCACCCTCTACCGAATAAACAGGTGAAGATTGC TGAAGATGGCACCCTCTACTGAATAAACAGGTGAAGATTGC < 41bp 0.508628136908852 0.716482615444954 NA NA prediction 0.415708957072204 Functional Gain - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27560120 chr2:27560121 stopgain 1.000 1 20 hm7G_associated_SNPs_30545 0 0 1 0 2 GTF3C2 chr2:27560111 5'GT 27560111 Upstream 11bp 27960 chr2 27560121 27560121 1 - G A COAD 27560120 - 27560100 27560140 41 TGAAGATGGCACCCTCTACCGAATAAACAGGTGAAGATTGC TGAAGATGGCACCCTCTACTGAATAAACAGGTGAAGATTGC < 41bp 0.508628136908852 0.716482615444954 NA NA prediction 0.415708957072204 Functional Gain - GTF3C2 ENSG00000115207 CDS Human protein_coding chr2:27560120 chr2:27560121 stopgain 1.000 1 20 hm7G_associated_SNPs_30545 0 0 1 0 2 GTF3C2 chr2:27560209 3'AG 27560209 Downstream 89bp 27961 chr1 201287819 201287819 1 + C T SKCM 201287820 + 201287800 201287840 41 ACGCCCTGCCTGTTCTGGCCGACCGCGTCATCATTCCCTTC ACGCCCTGCCTGTTCTGGCTGACCGCGTCATCATTCCCTTC < 41bp 0.491077913070229 0.707852888447664 NA NA prediction 0.415705776895327 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201287820 chr1:201287819 synonymous SNV . 0 20 hm7G_associated_SNPs_30547 0 0 0 0 1 PKP1 chr1:201287746 3'AG 201287746 Downstream 74bp 27962 chr1 104115829 104115829 1 + G T SARC 104115830 + 104115810 104115850 41 TGGATGGGATTTTAATGATGGTAAATGTAAAACTGGAAGTG TGGATGGGATTTTAATGATTGTAAATGTAAAACTGGAAGTG < 41bp 0.386099742565259 0.707848519610204 NA NA prediction 0.415697039220407 Functional Gain - AMY2B ENSG00000240038 CDS Human protein_coding chr1:104115830 chr1:104115829 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_30549 0 0 0 0 1 AMY2B chr1:104115882 5'GT 104115882 Upstream 54bp 27963 chr9 127549481 127549481 1 + G A SKCM 127549482 + 127549462 127549502 41 GTGAGAACGAGTGGAAGATGGAGAAACTCAAAAAGCAGGCG GTGAGAACGAGTGGAAGATAGAGAAACTCAAAAAGCAGGCG < 41bp 0.502166013406606 0.710013296526102 NA NA prediction 0.415694566238992 Functional Gain - OLFML2A ENSG00000185585 CDS Human protein_coding chr9:127549482 chr9:127549481 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30550 0 0 0 0 1 OLFML2A chr9:127549517 5'GT 127549517 Upstream 37bp 27964 chr16 31123452 31123452 1 + G A COAD 31123453 + 31123433 31123473 41 CACCCCCAGCTTTGGCTTCGGGTTGCCCACGTCACGGGCCT CACCCCCAGCTTTGGCTTCAGGTTGCCCACGTCACGGGCCT < 41bp 0.47905495233137 0.707845380130382 NA NA prediction 0.415690760260764 Functional Gain - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31123453 chr16:31123452 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_30552 0 0 1 0 1 BCKDK chr16:31123442 3'AG 31123442 Downstream 11bp 27965 chr3 13649626 13649626 1 + C T UCEC 13649627 + 13649607 13649647 41 AGTGGGCCATTGACAATGACGAGTGCCTGGAGATCCCTGAG AGTGGGCCATTGACAATGATGAGTGCCTGGAGATCCCTGAG < 41bp 0.51929211394771 0.727135944489378 NA NA prediction 0.415687661083336 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13649627 chr3:13649626 synonymous SNV . 0 20 hm7G_associated_SNPs_30553 0 0 0 0 2 FBLN2 chr3:13649562 3'AG 13649562 Downstream 65bp 27966 chr3 13649626 13649626 1 + C T UCEC 13649627 + 13649607 13649647 41 AGTGGGCCATTGACAATGACGAGTGCCTGGAGATCCCTGAG AGTGGGCCATTGACAATGATGAGTGCCTGGAGATCCCTGAG < 41bp 0.51929211394771 0.727135944489378 NA NA prediction 0.415687661083336 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13649627 chr3:13649626 synonymous SNV . 0 20 hm7G_associated_SNPs_30553 0 0 0 0 2 FBLN2 chr3:13649673 5'GT 13649673 Upstream 48bp 27967 chr18 63511131 63511131 1 + G A STAD 63511132 + 63511112 63511152 41 ACCCTCGCTTTCTGAGCTTGGGTCCGTTCAGTGACACGACA ACCCTCGCTTTCTGAGCTTAGGTCCGTTCAGTGACACGACA < 41bp 0.499029107758974 0.707843540613982 NA NA prediction 0.415687081227963 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63511132 chr18:63511131 synonymous SNV . 0 20 hm7G_associated_SNPs_30554 0 0 0 0 1 CDH7 chr18:63511048 3'AG 63511048 Downstream 84bp 27968 chr17 7407065 7407065 1 + C T UCEC 7407066 + 7407046 7407086 41 GGCTCAGTGGGGAGGCCTTCGACTGGCTGCTTGGGGAGATT GGCTCAGTGGGGAGGCCTTTGACTGGCTGCTTGGGGAGATT < 41bp 0.510699840128316 0.718540280712403 NA NA prediction 0.415680881168174 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7407066 chr17:7407065 synonymous SNV . 0 20 hm7G_associated_SNPs_30556 0 0 1 0 1 POLR2A chr17:7407110 5'GT 7407110 Upstream 46bp 27969 chr10 71000488 71000488 1 + C T GBM 71000489 + 71000469 71000509 41 CCTATGACGACCCCTACTGCGAAGTTGGTGTCATCATCGGT CCTATGACGACCCCTACTGTGAAGTTGGTGTCATCATCGGT < 41bp 0.510533923609602 0.718371297861113 NA NA prediction 0.415674748503021 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71000489 chr10:71000488 synonymous SNV . 0 20 hm7G_associated_SNPs_30559 0 0 0 0 2 HKDC1 chr10:71000408 3'AG 71000408 Downstream 81bp 27970 chr10 71000488 71000488 1 + C T GBM 71000489 + 71000469 71000509 41 CCTATGACGACCCCTACTGCGAAGTTGGTGTCATCATCGGT CCTATGACGACCCCTACTGTGAAGTTGGTGTCATCATCGGT < 41bp 0.510533923609602 0.718371297861113 NA NA prediction 0.415674748503021 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71000489 chr10:71000488 synonymous SNV . 0 20 hm7G_associated_SNPs_30559 0 0 0 0 2 HKDC1 chr10:71000507 5'GT 71000507 Upstream 20bp 27971 chr4 52777283 52777283 1 + G T LUAD 52777284 + 52777264 52777304 41 ACACTGCCAAGTGCATGTTGGGACTGTTATTAGGAAAAATC ACACTGCCAAGTGCATGTTTGGACTGTTATTAGGAAAAATC < 41bp 0.378351584118518 0.707836625113208 NA NA prediction 0.415673250226417 Functional Gain - DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52777284 chr4:52777283 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30560 0 0 1 2 2 DCUN1D4 chr4:52777236 3'AG 52777236 Downstream 48bp 27972 chr4 52777283 52777283 1 + G T LUAD 52777284 + 52777264 52777304 41 ACACTGCCAAGTGCATGTTGGGACTGTTATTAGGAAAAATC ACACTGCCAAGTGCATGTTTGGACTGTTATTAGGAAAAATC < 41bp 0.378351584118518 0.707836625113208 NA NA prediction 0.415673250226417 Functional Gain - DCUN1D4 ENSG00000109184 CDS Human protein_coding chr4:52777284 chr4:52777283 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30560 0 0 1 2 2 DCUN1D4 chr4:52777340 5'GT 52777340 Upstream 58bp 27973 chr11 130332025 130332025 1 + G T UCEC 130332026 + 130332006 130332046 41 ACAATGTGAAAGTCTGTGAGGAGGTGTTTGGGAAGCTCCGA ACAATGTGAAAGTCTGTGATGAGGTGTTTGGGAAGCTCCGA < 41bp 0.704705253934495 0.912541468512214 NA NA prediction 0.415672429155437 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130332026 chr11:130332025 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30561 0 0 0 0 1 ADAMTS15 chr11:130331982 3'AG 130331982 Downstream 44bp 27974 chr7 20441389 20441389 1 + G T UCEC 20441390 + 20441370 20441410 41 GAAAAAATGTGATGTCACAGGAGGAAAAAACTATGCAATAA GAAAAAATGTGATGTCACATGAGGAAAAAACTATGCAATAA < 41bp 0.395943005379014 0.707834867864305 NA NA prediction 0.415669735728609 Functional Gain - ITGB8 ENSG00000105855 CDS Human protein_coding chr7:20441390 chr7:20441389 stopgain 0.993 0 20 hm7G_associated_SNPs_30562 0 0 0 0 1 ITGB8 chr7:20441344 3'AG 20441344 Downstream 46bp 27975 chr12 129360558 129360558 1 + C T GBM 129360559 + 129360539 129360579 41 TCATCTTGGCTGAGAACTGCGAGGCTGCCCTGGCTCTTCAT TCATCTTGGCTGAGAACTGTGAGGCTGCCCTGGCTCTTCAT < 41bp 0.533357241742378 0.741189661899727 NA NA prediction 0.415664840314699 Functional Gain - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129360559 chr12:129360558 synonymous SNV . 0 20 hm7G_associated_SNPs_30563 0 0 0 0 2 GLT1D1 chr12:129360459 3'AG 129360459 Downstream 100bp 27976 chr12 129360558 129360558 1 + C T GBM 129360559 + 129360539 129360579 41 TCATCTTGGCTGAGAACTGCGAGGCTGCCCTGGCTCTTCAT TCATCTTGGCTGAGAACTGTGAGGCTGCCCTGGCTCTTCAT < 41bp 0.533357241742378 0.741189661899727 NA NA prediction 0.415664840314699 Functional Gain - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129360559 chr12:129360558 synonymous SNV . 0 20 hm7G_associated_SNPs_30563 0 0 0 0 2 GLT1D1 chr12:129360607 5'GT 129360607 Upstream 50bp 27977 chr11 71932037 71932037 1 + C T STAD 71932038 + 71932018 71932058 41 GATGGAGCCCGCCTGCAAGCGCCACTTCATCCAGGACACCT GATGGAGCCCGCCTGCAAGTGCCACTTCATCCAGGACACCT < 41bp 0.515492230089481 0.723324288894363 NA NA prediction 0.415664117609764 Functional Gain - FOLR2 ENSG00000165457 CDS Human protein_coding chr11:71932038 chr11:71932037 nonsynonymous SNV 0.482 1 20 hm7G_associated_SNPs_30564 0 0 0 0 1 FOLR2 chr11:71932102 5'GT 71932102 Upstream 66bp 27978 chr14 105207555 105207555 1 + C T rs138449071 105207556 + 105207536 105207576 41 TCCTGGTGGAGGGTGCCAACGCCGCCCTCCTCGACATTGAC TCCTGGTGGAGGGTGCCAATGCCGCCCTCCTCGACATTGAC < 41bp 0.531729372771296 0.739561341744643 NA NA prediction 0.415663937946693 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105207556 chr14:105207555 synonymous SNV . 0 20 hm7G_associated_SNPs_30565 0 0 0 0 1 ADSSL1 chr14:105207580 5'GT 105207580 Upstream 26bp 27979 chr17 73559139 73559139 1 + G A SKCM 73559140 + 73559120 73559160 41 GGCGTGTGTTCGAGATGGTGGAGGCACTGCAGGAGCACCCT GGCGTGTGTTCGAGATGGTAGAGGCACTGCAGGAGCACCCT < 41bp 0.489650392899337 0.707831470268596 NA NA prediction 0.415662940537192 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73559140 chr17:73559139 synonymous SNV . 0 20 hm7G_associated_SNPs_30566 0 0 1 0 1 LLGL2 chr17:73559097 3'AG 73559097 Downstream 43bp 27980 chr22 19747196 19747196 1 + G A SKCM 19747197 + 19747177 19747217 41 GCACCGTCACCAGGGACATGGAAGGTGAGCCTCCAGGCCGT GCACCGTCACCAGGGACATAGAAGGTGAGCCTCCAGGCCGT < 41bp 0.543858348169826 0.751689379645048 NA NA prediction 0.415662062950445 Functional Gain - TBX1 ENSG00000184058 CDS Human protein_coding chr22:19747197 chr22:19747196 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30567 0 0 0 0 1 TBX1 chr22:19747200 5'GT 19747200 Upstream 5bp 27981 chr15 42127825 42127825 1 + C T rs201071880 42127826 + 42127806 42127846 41 AACTTCTGGCTGGGGGAGGCGGCTGCAGTGACTTCTTGTAG AACTTCTGGCTGGGGGAGGTGGCTGCAGTGACTTCTTGTAG < 41bp 0.523900379924257 0.731730733413125 NA NA prediction 0.415660706977736 Functional Gain - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127826 chr15:42127825 nonsynonymous SNV 0.792 1 20 hm7G_associated_SNPs_30568 0 0 1 0 2 JMJD7;JMJD7-PLA2G4B chr15:42127786 3'AG 42127786 Downstream 40bp 27982 chr15 42127825 42127825 1 + C T rs201071880 42127826 + 42127806 42127846 41 AACTTCTGGCTGGGGGAGGCGGCTGCAGTGACTTCTTGTAG AACTTCTGGCTGGGGGAGGTGGCTGCAGTGACTTCTTGTAG < 41bp 0.523900379924257 0.731730733413125 NA NA prediction 0.415660706977736 Functional Gain - JMJD7;JMJD7-PLA2G4B ENSG00000168970;ENSG00000243708;ENSG00000243789 CDS Human other chr15:42127826 chr15:42127825 nonsynonymous SNV 0.792 1 20 hm7G_associated_SNPs_30568 0 0 1 0 2 JMJD7;JMJD7-PLA2G4B chr15:42127842 5'GT 42127842 Upstream 18bp 27983 chr16 314092 314092 1 + C T UCEC 314093 + 314073 314113 41 TCCCTGGGGGTCCACTGTCCGCCAGCCTGCCGACCGCAGAC TCCCTGGGGGTCCACTGTCTGCCAGCCTGCCGACCGCAGAC < 41bp 0.505019312919653 0.71284833364841 NA NA prediction 0.415658041457515 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:314093 chr16:314092 synonymous SNV . 0 20 hm7G_associated_SNPs_30570 0 0 0 0 2 FAM234A chr16:314015 3'AG 314015 Downstream 78bp 27984 chr16 314092 314092 1 + C T UCEC 314093 + 314073 314113 41 TCCCTGGGGGTCCACTGTCCGCCAGCCTGCCGACCGCAGAC TCCCTGGGGGTCCACTGTCTGCCAGCCTGCCGACCGCAGAC < 41bp 0.505019312919653 0.71284833364841 NA NA prediction 0.415658041457515 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:314093 chr16:314092 synonymous SNV . 0 20 hm7G_associated_SNPs_30570 0 0 0 0 2 FAM234A chr16:314170 5'GT 314170 Upstream 79bp 27985 chr18 74580780 74580780 1 + C T rs2276211 74580781 + 74580761 74580801 41 AAAGAGTTCGAGACCTCCTCGGAGCTGAAGGAACACATGAA AAAGAGTTCGAGACCTCCTTGGAGCTGAAGGAACACATGAA < 41bp 0.516160739455093 0.72398927967022 NA NA prediction 0.415657080430255 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74580781 chr18:74580780 nonsynonymous SNV 0.016 0 20 hm7G_associated_SNPs_30572 0 0 1 0 1 ZNF236 chr18:74580819 5'GT 74580819 Upstream 40bp 27986 chr18 48500864 48500864 1 + C T UCEC 48500865 + 48500845 48500885 41 TGGTCCTTCGGTGTGAAGGCGAGTGCTGGCTCTTTGACTGT TGGTCCTTCGGTGTGAAGGTGAGTGCTGGCTCTTTGACTGT < 41bp 0.514679824634322 0.722507394678063 NA NA prediction 0.415655140087481 Functional Gain - ELAC1 ENSG00000141642;ENSG00000267699 CDS Human other chr18:48500865 chr18:48500864 synonymous SNV . 0 20 hm7G_associated_SNPs_30573 0 0 1 0 1 ELAC1 chr18:48500931 5'GT 48500931 Upstream 68bp 27987 chr2 219736442 219736442 1 + G A BLCA 219736443 + 219736423 219736463 41 GCGACGACGTGGACTTCGGGGACGAGAAGTCGAGGCTCTTT GCGACGACGTGGACTTCGGAGACGAGAAGTCGAGGCTCTTT < 41bp 0.515302762775302 0.723127161805427 NA NA prediction 0.415648798060251 Functional Gain - WNT6 ENSG00000115596 CDS Human protein_coding chr2:219736443 chr2:219736442 synonymous SNV . 0 20 hm7G_associated_SNPs_30575 0 0 0 0 1 WNT6 chr2:219736541 5'GT 219736541 Upstream 100bp 27988 chr17 6012996 6012996 1 + C T UCEC 6012997 + 6012977 6013017 41 TACCCCCCGGTTCAACCTGCGGGATGCCATGGACAGCTCAG TACCCCCCGGTTCAACCTGTGGGATGCCATGGACAGCTCAG < 41bp 0.538934702087426 0.746758442313426 NA NA prediction 0.415647480452002 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012997 chr17:6012996 nonsynonymous SNV 0.855 1 20 hm7G_associated_SNPs_30576 0 0 1 0 2 WSCD1 chr17:6012927 3'AG 6012927 Downstream 70bp 27989 chr17 6012996 6012996 1 + C T UCEC 6012997 + 6012977 6013017 41 TACCCCCCGGTTCAACCTGCGGGATGCCATGGACAGCTCAG TACCCCCCGGTTCAACCTGTGGGATGCCATGGACAGCTCAG < 41bp 0.538934702087426 0.746758442313426 NA NA prediction 0.415647480452002 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:6012997 chr17:6012996 nonsynonymous SNV 0.855 1 20 hm7G_associated_SNPs_30576 0 0 1 0 2 WSCD1 chr17:6013086 5'GT 6013086 Upstream 91bp 27990 chr9 34647880 34647880 1 + G A UCEC 34647881 + 34647861 34647901 41 TAACGCTGCCACTCATGTCGGTCCCTGAGATCCGGGCTGTT TAACGCTGCCACTCATGTCAGTCCCTGAGATCCGGGCTGTT < 41bp 0.52091947486841 0.728742791859477 NA NA prediction 0.415646633982134 Functional Gain - GALT ENSG00000213930 CDS Human protein_coding chr9:34647881 chr9:34647880 synonymous SNV . 0 20 hm7G_associated_SNPs_30577 0 0 1 0 2 GALT chr9:34647829 3'AG 34647829 Downstream 52bp 27991 chr9 34647880 34647880 1 + G A UCEC 34647881 + 34647861 34647901 41 TAACGCTGCCACTCATGTCGGTCCCTGAGATCCGGGCTGTT TAACGCTGCCACTCATGTCAGTCCCTGAGATCCGGGCTGTT < 41bp 0.52091947486841 0.728742791859477 NA NA prediction 0.415646633982134 Functional Gain - GALT ENSG00000213930 CDS Human protein_coding chr9:34647881 chr9:34647880 synonymous SNV . 0 20 hm7G_associated_SNPs_30577 0 0 1 0 2 GALT chr9:34647958 5'GT 34647958 Upstream 79bp 27992 chr5 137780167 137780167 1 + G A SKCM 137780168 + 137780148 137780188 41 TGCTGTCCCCTTACACCAAGGGCTCCAGCGTGCTCTACCGC TGCTGTCCCCTTACACCAAAGGCTCCAGCGTGCTCTACCGC < 41bp 0.565698829823021 0.773521540739054 NA NA prediction 0.415645421832066 Functional Gain - REEP2 ENSG00000132563 CDS Human protein_coding chr5:137780168 chr5:137780167 synonymous SNV . 0 20 hm7G_associated_SNPs_30578 0 0 1 0 2 REEP2 chr5:137780104 3'AG 137780104 Downstream 64bp 27993 chr5 137780167 137780167 1 + G A SKCM 137780168 + 137780148 137780188 41 TGCTGTCCCCTTACACCAAGGGCTCCAGCGTGCTCTACCGC TGCTGTCCCCTTACACCAAAGGCTCCAGCGTGCTCTACCGC < 41bp 0.565698829823021 0.773521540739054 NA NA prediction 0.415645421832066 Functional Gain - REEP2 ENSG00000132563 CDS Human protein_coding chr5:137780168 chr5:137780167 synonymous SNV . 0 20 hm7G_associated_SNPs_30578 0 0 1 0 2 REEP2 chr5:137780224 5'GT 137780224 Upstream 58bp 27994 chr1 32714049 32714049 1 + G A rs377093352 32714050 + 32714030 32714070 41 AGCTGCACCGACTGAAGATGGACCAAGCCTGTCACCTGCAC AGCTGCACCGACTGAAGATAGACCAAGCCTGTCACCTGCAC < 41bp 0.515143184960763 0.722965644437503 NA NA prediction 0.415644918953481 Functional Gain - FAM167B ENSG00000183615 CDS Human protein_coding chr1:32714050 chr1:32714049 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_30579 0 0 0 0 1 FAM167B chr1:32713972 3'AG 32713972 Downstream 78bp 27995 chr16 67208573 67208573 1 + G A BLCA 67208574 + 67208554 67208594 41 GCCCAGGCCACTGGACGCCGGAGGCACCCGGCTCGGGGACC GCCCAGGCCACTGGACGCCAGAGGCACCCGGCTCGGGGACC < 41bp 0.529306869919254 0.737127480040592 NA NA prediction 0.415641220242677 Functional Gain - NOL3 ENSG00000140939 CDS Human protein_coding chr16:67208574 chr16:67208573 nonsynonymous SNV 0.437 0 20 hm7G_associated_SNPs_30580 0 0 0 0 1 NOL3 chr16:67208524 3'AG 67208524 Downstream 50bp 27996 chr7 150706663 150706663 1 + G A rs199636732 150706664 + 150706644 150706684 41 CAGTAGAGCAGCTGGAGAAGGGCAGCCCTGGTGAGGGGCAG CAGTAGAGCAGCTGGAGAAAGGCAGCCCTGGTGAGGGGCAG < 41bp 0.555435324801934 0.763253292988569 NA NA prediction 0.415635936373269 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150706664 chr7:150706663 synonymous SNV . 0 20 hm7G_associated_SNPs_30582 0 0 0 0 1 NOS3 chr7:150706673 5'GT 150706673 Upstream 11bp 27997 chr19 1008216 1008216 1 + G A rs139755201 1008217 + 1008197 1008237 41 CAGCCGCTACAAGTCCTCCGGCTTCATCGACCTGCTCCACG CAGCCGCTACAAGTCCTCCAGCTTCATCGACCTGCTCCACG < 41bp 0.562438064764252 0.770252829239488 NA NA prediction 0.415629528950471 Functional Gain - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1008217 chr19:1008216 nonsynonymous SNV 0.915 3 20 hm7G_associated_SNPs_30586 0 0 0 0 2 GRIN3B chr19:1008139 3'AG 1008139 Downstream 78bp 27998 chr19 1008216 1008216 1 + G A rs139755201 1008217 + 1008197 1008237 41 CAGCCGCTACAAGTCCTCCGGCTTCATCGACCTGCTCCACG CAGCCGCTACAAGTCCTCCAGCTTCATCGACCTGCTCCACG < 41bp 0.562438064764252 0.770252829239488 NA NA prediction 0.415629528950471 Functional Gain - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1008217 chr19:1008216 nonsynonymous SNV 0.915 3 20 hm7G_associated_SNPs_30586 0 0 0 0 2 GRIN3B chr19:1008290 5'GT 1008290 Upstream 75bp 27999 chr13 113742894 113742894 1 + C T STAD 113742895 + 113742875 113742915 41 GAAGCCAGCCAGCACCGGGCGCTGGAGCAGTCACAGAGCCT GAAGCCAGCCAGCACCGGGTGCTGGAGCAGTCACAGAGCCT < 41bp 0.50390766391468 0.711721623744771 NA NA prediction 0.415627919660181 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113742895 chr13:113742894 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_30587 0 0 1 0 2 MCF2L chr13:113742876 3'AG 113742876 Downstream 19bp 28000 chr13 113742894 113742894 1 + C T STAD 113742895 + 113742875 113742915 41 GAAGCCAGCCAGCACCGGGCGCTGGAGCAGTCACAGAGCCT GAAGCCAGCCAGCACCGGGTGCTGGAGCAGTCACAGAGCCT < 41bp 0.50390766391468 0.711721623744771 NA NA prediction 0.415627919660181 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113742895 chr13:113742894 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_30587 0 0 1 0 2 MCF2L chr13:113742942 5'GT 113742942 Upstream 49bp 28001 chr9 99699593 99699593 1 + G A LUSC 99699594 + 99699574 99699614 41 AACGGGAAAAGGGCAAAGTGGAGCAGCCGCAGGAAGAGGAC AACGGGAAAAGGGCAAAGTAGAGCAGCCGCAGGAAGAGGAC < 41bp 0.521751371522448 0.72956525493006 NA NA prediction 0.415627766815223 Functional Gain - NUTM2G ENSG00000188152 CDS Human protein_coding chr9:99699594 chr9:99699593 synonymous SNV . 0 20 hm7G_associated_SNPs_30588 0 0 0 0 1 NUTM2G chr9:99699686 5'GT 99699686 Upstream 94bp 28002 chr22 22040816 22040816 1 + C T rs201566623 22040817 + 22040797 22040837 41 GCGCTTCCTTCACCTCCACCGCGATGGTCCCGGAGACCACA GCGCTTCCTTCACCTCCACTGCGATGGTCCCGGAGACCACA < 41bp 0.524285116450285 0.73209814159276 NA NA prediction 0.415626050284948 Functional Gain - PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040817 chr22:22040816 synonymous SNV . 0 20 hm7G_associated_SNPs_30589 0 0 1 0 2 PPIL2 chr22:22040772 3'AG 22040772 Downstream 45bp 28003 chr22 22040816 22040816 1 + C T rs201566623 22040817 + 22040797 22040837 41 GCGCTTCCTTCACCTCCACCGCGATGGTCCCGGAGACCACA GCGCTTCCTTCACCTCCACTGCGATGGTCCCGGAGACCACA < 41bp 0.524285116450285 0.73209814159276 NA NA prediction 0.415626050284948 Functional Gain - PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040817 chr22:22040816 synonymous SNV . 0 20 hm7G_associated_SNPs_30589 0 0 1 0 2 PPIL2 chr22:22040847 5'GT 22040847 Upstream 32bp 28004 chr8 39525666 39525666 1 + C T rs35144407 39525667 + 39525647 39525687 41 GAACTGCCTATTGCTATAACGGACAATGTCAAACTACTGAT GAACTGCCTATTGCTATAATGGACAATGTCAAACTACTGAT < 41bp 0.498409242846341 0.707812692965429 NA NA prediction 0.415625385930857 Functional Gain - ADAM18 ENSG00000168619 CDS Human protein_coding chr8:39525667 chr8:39525666 synonymous SNV . 0 20 hm7G_associated_SNPs_30590 0 0 0 0 1 ADAM18 chr8:39525715 5'GT 39525715 Upstream 50bp 28005 chr20 45700858 45700858 1 + G T rs533994822 45700859 + 45700839 45700879 41 ATCAAGGAGGAAATGGACTGGGCAACGCAGCCGGTTTCGGG ATCAAGGAGGAAATGGACTTGGCAACGCAGCCGGTTTCGGG < 41bp 0.359391069680406 0.707811688381042 NA NA prediction 0.415623376762085 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45700859 chr20:45700858 synonymous SNV . 0 20 hm7G_associated_SNPs_30592 0 0 0 0 2 EYA2 chr20:45700824 3'AG 45700824 Downstream 35bp 28006 chr20 45700858 45700858 1 + G T rs533994822 45700859 + 45700839 45700879 41 ATCAAGGAGGAAATGGACTGGGCAACGCAGCCGGTTTCGGG ATCAAGGAGGAAATGGACTTGGCAACGCAGCCGGTTTCGGG < 41bp 0.359391069680406 0.707811688381042 NA NA prediction 0.415623376762085 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45700859 chr20:45700858 synonymous SNV . 0 20 hm7G_associated_SNPs_30592 0 0 0 0 2 EYA2 chr20:45700891 5'GT 45700891 Upstream 34bp 28007 chr15 91312750 91312750 1 + C T OV 91312751 + 91312731 91312771 41 GTTCCGGTGATGGCTCTTACGGCCACAGCTAATCCCAGGGT GTTCCGGTGATGGCTCTTATGGCCACAGCTAATCCCAGGGT < 41bp 0.530015142770014 0.737821451880093 NA NA prediction 0.415612618220156 Functional Gain - BLM ENSG00000197299 CDS Human protein_coding chr15:91312751 chr15:91312750 nonsynonymous SNV 0.925 4 20 hm7G_associated_SNPs_30593 0 0 1 0 2 BLM chr15:91312668 3'AG 91312668 Downstream 83bp 28008 chr15 91312750 91312750 1 + C T OV 91312751 + 91312731 91312771 41 GTTCCGGTGATGGCTCTTACGGCCACAGCTAATCCCAGGGT GTTCCGGTGATGGCTCTTATGGCCACAGCTAATCCCAGGGT < 41bp 0.530015142770014 0.737821451880093 NA NA prediction 0.415612618220156 Functional Gain - BLM ENSG00000197299 CDS Human protein_coding chr15:91312751 chr15:91312750 nonsynonymous SNV 0.925 4 20 hm7G_associated_SNPs_30593 0 0 1 0 2 BLM chr15:91312816 5'GT 91312816 Upstream 67bp 28009 chr14 105963729 105963729 1 + G A CESC 105963730 + 105963710 105963750 41 AGCGTGAGAACCAGCGCCTGGAGGCTGTCCTGGCGTGGCGG AGCGTGAGAACCAGCGCCTAGAGGCTGTCCTGGCGTGGCGG < 41bp 0.568000518545688 0.77580265187885 NA NA prediction 0.415604266666324 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105963730 chr14:105963729 synonymous SNV . 0 20 hm7G_associated_SNPs_30594 0 0 1 0 2 C14orf80 chr14:105963694 3'AG 105963694 Downstream 36bp 28010 chr14 105963729 105963729 1 + G A CESC 105963730 + 105963710 105963750 41 AGCGTGAGAACCAGCGCCTGGAGGCTGTCCTGGCGTGGCGG AGCGTGAGAACCAGCGCCTAGAGGCTGTCCTGGCGTGGCGG < 41bp 0.568000518545688 0.77580265187885 NA NA prediction 0.415604266666324 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105963730 chr14:105963729 synonymous SNV . 0 20 hm7G_associated_SNPs_30594 0 0 1 0 2 C14orf80 chr14:105963780 5'GT 105963780 Upstream 52bp 28011 chr2 27522228 27522228 1 + G A HNSC 27522229 + 27522209 27522249 41 CTCTCTCTGCAAGGTCTTCGGTGCCCACAAGGACTGTGAGG CTCTCTCTGCAAGGTCTTCAGTGCCCACAAGGACTGTGAGG < 41bp 0.527020217126184 0.734816066425498 NA NA prediction 0.415591698598628 Functional Gain - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27522229 chr2:27522228 nonsynonymous SNV 0.794 4 20 hm7G_associated_SNPs_30595 0 0 0 0 1 TRIM54 chr2:27522284 5'GT 27522284 Upstream 57bp 28012 chr11 10524411 10524411 1 + C T COAD 10524412 + 10524392 10524432 41 TGCATGTTTCTCTTTCCACCGATGACCCCATGCAGTTCCAC TGCATGTTTCTCTTTCCACTGATGACCCCATGCAGTTCCAC < 41bp 0.524280840298894 0.732075182595591 NA NA prediction 0.415588684593395 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10524412 chr11:10524411 stopgain . 0 20 hm7G_associated_SNPs_30596 0 0 0 0 1 AMPD3 chr11:10524441 5'GT 10524441 Upstream 31bp 28013 chr2 103095387 103095387 1 + G A rs17027275 103095388 + 103095368 103095408 41 GGTGGGCGGCATCATCTTCGGCACCGACCACAAATCGCCTC GGTGGGCGGCATCATCTTCAGCACCGACCACAAATCGCCTC < 41bp 0.521523671111175 0.729317042507907 NA NA prediction 0.415586742793464 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103095388 chr2:103095387 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_30598 0 0 0 0 1 SLC9A4 chr2:103095298 3'AG 103095298 Downstream 90bp 28014 chr1 67205130 67205130 1 + C T UCEC 67205131 + 67205111 67205151 41 TATAATACAGATGCAATGACGACTGCTGTGGCCCTCAACAA TATAATACAGATGCAATGATGACTGCTGTGGCCCTCAACAA < 41bp 0.512716991382357 0.720509842184328 NA NA prediction 0.415585701603941 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67205131 chr1:67205130 nonsynonymous SNV 0.057 2 20 hm7G_associated_SNPs_30599 0 0 0 0 1 SGIP1 chr1:67205220 5'GT 67205220 Upstream 91bp 28015 chr4 96035953 96035953 1 + G T STAD 96035954 + 96035934 96035974 41 TGGTTGCCTAGGACTAGAAGGCTCAGATTTTCAGTGTCGGG TGGTTGCCTAGGACTAGAATGCTCAGATTTTCAGTGTCGGG < 41bp 0.370252159555288 0.707791479481762 NA NA prediction 0.415582958963524 Functional Gain - BMPR1B ENSG00000138696 CDS Human protein_coding chr4:96035954 chr4:96035953 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_30600 0 0 0 0 2 BMPR1B chr4:96035871 3'AG 96035871 Downstream 83bp 28016 chr4 96035953 96035953 1 + G T STAD 96035954 + 96035934 96035974 41 TGGTTGCCTAGGACTAGAAGGCTCAGATTTTCAGTGTCGGG TGGTTGCCTAGGACTAGAATGCTCAGATTTTCAGTGTCGGG < 41bp 0.370252159555288 0.707791479481762 NA NA prediction 0.415582958963524 Functional Gain - BMPR1B ENSG00000138696 CDS Human protein_coding chr4:96035954 chr4:96035953 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_30600 0 0 0 0 2 BMPR1B chr4:96035973 5'GT 96035973 Upstream 21bp 28017 chr2 27821117 27821117 1 + C T CESC 27821118 + 27821098 27821138 41 CAGCTGCTACTTCTCATGTCGAAGGTATCAATATCAGTGTC CAGCTGCTACTTCTCATGTTGAAGGTATCAATATCAGTGTC < 41bp 0.502677099310174 0.710464495235115 NA NA prediction 0.415574791849883 Functional Gain - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27821118 chr2:27821117 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_30603 0 0 1 0 1 ZNF512 chr2:27821121 5'GT 27821121 Upstream 5bp 28018 chr15 92663789 92663789 1 + C T UCEC 92663790 + 92663770 92663810 41 TTGCAGTGGTGGCTGGCTTCGCTGCCTTTTTGGGGAAGTAC TTGCAGTGGTGGCTGGCTTTGCTGCCTTTTTGGGGAAGTAC < 41bp 0.489157111543964 0.707785114852504 NA NA prediction 0.415570229705008 Functional Gain - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92663790 chr15:92663789 synonymous SNV . 0 20 hm7G_associated_SNPs_30605 0 0 0 0 2 SLCO3A1 chr15:92663695 3'AG 92663695 Downstream 95bp 28019 chr15 92663789 92663789 1 + C T UCEC 92663790 + 92663770 92663810 41 TTGCAGTGGTGGCTGGCTTCGCTGCCTTTTTGGGGAAGTAC TTGCAGTGGTGGCTGGCTTTGCTGCCTTTTTGGGGAAGTAC < 41bp 0.489157111543964 0.707785114852504 NA NA prediction 0.415570229705008 Functional Gain - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92663790 chr15:92663789 synonymous SNV . 0 20 hm7G_associated_SNPs_30605 0 0 0 0 2 SLCO3A1 chr15:92663859 5'GT 92663859 Upstream 71bp 28020 chr4 8239370 8239370 1 + C T UCEC 8239371 + 8239351 8239391 41 TGAAGGTGTACCTGGTGCTCGGTGACATCATCTTCTACGAC TGAAGGTGTACCTGGTGCTTGGTGACATCATCTTCTACGAC < 41bp 0.496078101704575 0.707782504976491 NA NA prediction 0.415565009952982 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8239371 chr4:8239370 synonymous SNV . 0 20 hm7G_associated_SNPs_30607 0 0 0 0 1 SH3TC1 chr4:8239397 5'GT 8239397 Upstream 28bp 28021 chr7 150699033 150699033 1 + C T PAAD 150699034 + 150699014 150699054 41 GCAGCTGGGGAGACTCTTCCGGAAGGCTTTTGATCCCCGGG GCAGCTGGGGAGACTCTTCTGGAAGGCTTTTGATCCCCGGG < 41bp 0.535377373294369 0.743156941904928 NA NA prediction 0.415559137221117 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150699034 chr7:150699033 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30609 0 0 0 0 1 NOS3 chr7:150699053 5'GT 150699053 Upstream 21bp 28022 chr3 128753140 128753140 1 + G A rs114087327 128753141 + 128753121 128753161 41 GCTGAGGACTCAGGGCTGCGGTGGGAGGACCCTGGGGACCT GCTGAGGACTCAGGGCTGCAGTGGGAGGACCCTGGGGACCT < 41bp 0.520076789564314 0.72785583685092 NA NA prediction 0.415558094573213 Functional Gain - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128753141 chr3:128753140 nonsynonymous SNV 0.962 0 20 hm7G_associated_SNPs_30610 0 0 0 0 1 EFCC1 chr3:128753172 5'GT 128753172 Upstream 33bp 28023 chr2 234102462 234102462 1 + G T COAD 234102463 + 234102443 234102483 41 CCACTTTCCCTGCAGGCGAGGGCTGCATTGCCCTTCGGTTA CCACTTTCCCTGCAGGCGATGGCTGCATTGCCCTTCGGTTA < 41bp 0.360058520177773 0.707778364616368 NA NA prediction 0.415556729232737 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234102463 chr2:234102462 nonsynonymous SNV 0.683 4 20 hm7G_associated_SNPs_30611 0 0 1 0 1 INPP5D chr2:234102458 3'AG 234102458 Downstream 5bp 28024 chr11 380153 380153 1 + G A SKCM 380154 + 380134 380174 41 CAGTACCTGAGACGAACCGGGAACTTCGAGCGCTCCGCCGG CAGTACCTGAGACGAACCGAGAACTTCGAGCGCTCCGCCGG < 41bp 0.483912643927692 0.707776929440838 NA NA prediction 0.415553858881677 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:380154 chr11:380153 nonsynonymous SNV 0.668 3 20 hm7G_associated_SNPs_30612 0 0 0 0 2 B4GALNT4 chr11:380130 3'AG 380130 Downstream 24bp 28025 chr11 380153 380153 1 + G A SKCM 380154 + 380134 380174 41 CAGTACCTGAGACGAACCGGGAACTTCGAGCGCTCCGCCGG CAGTACCTGAGACGAACCGAGAACTTCGAGCGCTCCGCCGG < 41bp 0.483912643927692 0.707776929440838 NA NA prediction 0.415553858881677 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:380154 chr11:380153 nonsynonymous SNV 0.668 3 20 hm7G_associated_SNPs_30612 0 0 0 0 2 B4GALNT4 chr11:380202 5'GT 380202 Upstream 50bp 28026 chr9 135930153 135930153 1 + C T UCEC 135930154 + 135930134 135930174 41 GGCCTGGGCCCGTCGGGGACGAGTGGTGCTCGGAAACCAGC GGCCTGGGCCCGTCGGGGATGAGTGGTGCTCGGAAACCAGC < 41bp 0.528129139607615 0.735904920360451 NA NA prediction 0.415551561505671 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135930154 chr9:135930153 nonsynonymous SNV 0.080 0 20 hm7G_associated_SNPs_30613 0 0 1 0 2 GTF3C5 chr9:135930099 3'AG 135930099 Downstream 55bp 28027 chr9 135930153 135930153 1 + C T UCEC 135930154 + 135930134 135930174 41 GGCCTGGGCCCGTCGGGGACGAGTGGTGCTCGGAAACCAGC GGCCTGGGCCCGTCGGGGATGAGTGGTGCTCGGAAACCAGC < 41bp 0.528129139607615 0.735904920360451 NA NA prediction 0.415551561505671 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135930154 chr9:135930153 nonsynonymous SNV 0.080 0 20 hm7G_associated_SNPs_30613 0 0 1 0 2 GTF3C5 chr9:135930196 5'GT 135930196 Upstream 44bp 28028 chr8 42023011 42023011 1 + C T STAD 42023012 + 42022992 42023032 41 CAAACGCTGGGAATCTGAGCGCATCCTCTCCTTCATCCCTC CAAACGCTGGGAATCTGAGTGCATCCTCTCCTTCATCCCTC < 41bp 0.534054705730285 0.741830259827006 NA NA prediction 0.415551108193442 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42023012 chr8:42023011 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_30614 0 0 1 0 2 AP3M2 chr8:42022945 3'AG 42022945 Downstream 67bp 28029 chr8 42023011 42023011 1 + C T STAD 42023012 + 42022992 42023032 41 CAAACGCTGGGAATCTGAGCGCATCCTCTCCTTCATCCCTC CAAACGCTGGGAATCTGAGTGCATCCTCTCCTTCATCCCTC < 41bp 0.534054705730285 0.741830259827006 NA NA prediction 0.415551108193442 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42023012 chr8:42023011 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_30614 0 0 1 0 2 AP3M2 chr8:42023078 5'GT 42023078 Upstream 68bp 28030 chr19 11238691 11238691 1 + C T UCEC 11238692 + 11238672 11238712 41 TCTCTCCTGCAGCTCTGGGCGACGTTGCTGGCAGAGGAAAT TCTCTCCTGCAGCTCTGGGTGACGTTGCTGGCAGAGGAAAT < 41bp 0.51186344475679 0.719635477266334 NA NA prediction 0.41554406501909 Functional Gain - LDLR ENSG00000130164 CDS Human protein_coding chr19:11238692 chr19:11238691 synonymous SNV . 0 20 hm7G_associated_SNPs_30615 0 0 1 0 1 LDLR chr19:11238761 5'GT 11238761 Upstream 71bp 28031 chr19 56000783 56000783 1 + G A rs552673762 56000784 + 56000764 56000804 41 CCTGGAGGTCTGGCATGGCGGGCGCTGGGGCACCGTGTGTG CCTGGAGGTCTGGCATGGCAGGCGCTGGGGCACCGTGTGTG < 41bp 0.472606183300122 0.707771329751667 NA NA prediction 0.415542659503333 Functional Gain - SSC5D ENSG00000179954 CDS Human protein_coding chr19:56000784 chr19:56000783 nonsynonymous SNV 0.636 4 20 hm7G_associated_SNPs_30616 0 0 0 0 1 SSC5D chr19:56000721 3'AG 56000721 Downstream 63bp 28032 chr17 38122034 38122034 1 + C T COAD 38122035 + 38122015 38122055 41 CAGCCTCATCGACTTCAAGCGCTTCCATCCCTTCTGCCTGG CAGCCTCATCGACTTCAAGTGCTTCCATCCCTTCTGCCTGG < 41bp 0.518045386754194 0.725816101340869 NA NA prediction 0.415541429173351 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38122035 chr17:38122034 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_30617 0 0 0 0 1 GSDMA chr17:38121936 3'AG 38121936 Downstream 99bp 28033 chr11 8119342 8119342 1 + C T UCEC 8119343 + 8119323 8119363 41 GGACCCAACAGACTTGTCTCGAGGAGGGGACAGCTATATCG GGACCCAACAGACTTGTCTTGAGGAGGGGACAGCTATATCG < 41bp 0.51332508132211 0.721094672323034 NA NA prediction 0.415539182001848 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8119343 chr11:8119342 stopgain 1.000 1 20 hm7G_associated_SNPs_30618 0 0 1 0 2 TUB chr11:8119261 3'AG 8119261 Downstream 82bp 28034 chr11 8119342 8119342 1 + C T UCEC 8119343 + 8119323 8119363 41 GGACCCAACAGACTTGTCTCGAGGAGGGGACAGCTATATCG GGACCCAACAGACTTGTCTTGAGGAGGGGACAGCTATATCG < 41bp 0.51332508132211 0.721094672323034 NA NA prediction 0.415539182001848 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8119343 chr11:8119342 stopgain 1.000 1 20 hm7G_associated_SNPs_30618 0 0 1 0 2 TUB chr11:8119373 5'GT 8119373 Upstream 32bp 28035 chr7 48083113 48083113 1 + G T COAD 48083114 + 48083094 48083134 41 TGCCCCTGGAACCAGGAAAGGCTCTCCAGTGGCCTACTCCC TGCCCCTGGAACCAGGAAATGCTCTCCAGTGGCCTACTCCC < 41bp 0.702450138684663 0.910219171409915 NA NA prediction 0.415538065450504 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48083114 chr7:48083113 nonsynonymous SNV 0.622 3 20 hm7G_associated_SNPs_30619 0 0 0 0 1 C7orf57 chr7:48083078 3'AG 48083078 Downstream 36bp 28036 chr1 223949899 223949899 1 + C T UCEC 223949900 + 223949880 223949920 41 CCTTCCAGTTCGACATCAGCGAGGATGACATTGATGATGGA CCTTCCAGTTCGACATCAGTGAGGATGACATTGATGATGGA < 41bp 0.516863862678566 0.724630796618272 NA NA prediction 0.415533867879411 Functional Gain - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223949900 chr1:223949899 synonymous SNV . 0 20 hm7G_associated_SNPs_30620 0 0 1 0 2 CAPN2 chr1:223949888 3'AG 223949888 Downstream 12bp 28037 chr1 223949899 223949899 1 + C T UCEC 223949900 + 223949880 223949920 41 CCTTCCAGTTCGACATCAGCGAGGATGACATTGATGATGGA CCTTCCAGTTCGACATCAGTGAGGATGACATTGATGATGGA < 41bp 0.516863862678566 0.724630796618272 NA NA prediction 0.415533867879411 Functional Gain - CAPN2 ENSG00000162909 CDS Human protein_coding chr1:223949900 chr1:223949899 synonymous SNV . 0 20 hm7G_associated_SNPs_30620 0 0 1 0 2 CAPN2 chr1:223949953 5'GT 223949953 Upstream 55bp 28038 chr10 75557209 75557209 1 + C T SKCM 75557210 + 75557190 75557230 41 CTTAAGCCGGAGACCACTTCGAGGGGGCTGGGCCCCCACCT CTTAAGCCGGAGACCACTTTGAGGGGGCTGGGCCCCCACCT < 41bp 0.497461398014591 0.707765332324762 NA NA prediction 0.415530664649523 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557210 chr10:75557209 stopgain 1.000 0 20 hm7G_associated_SNPs_30621 0 0 1 0 1 ZSWIM8 chr10:75557135 3'AG 75557135 Downstream 75bp 28039 chr1 149755777 149755777 1 + G T UCEC 149755778 + 149755758 149755798 41 GTGCCAGAGAGGTCTCTCAGGGCGAAGTGACCCCATACAGC GTGCCAGAGAGGTCTCTCATGGCGAAGTGACCCCATACAGC < 41bp 0.368422721054407 0.707764844913579 NA NA prediction 0.415529689827158 Functional Gain - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149755778 chr1:149755777 nonsynonymous SNV 0.256 1 20 hm7G_associated_SNPs_30622 0 0 0 2 1 FCGR1A chr1:149755813 5'GT 149755813 Upstream 37bp 28040 chrX 103173813 103173813 1 + G A rs142304210 103173814 + 103173794 103173834 41 GGCTGAGGCCGACAGGCACGGGAGCCGGCGCGGCGTCAAGT GGCTGAGGCCGACAGGCACAGGAGCCGGCGCGGCGTCAAGT < 41bp 0.570771435805079 0.778535994354409 NA NA prediction 0.415529117098659 Functional Gain - LOC100128594 ENSG00000231728 ncRNA_intronic Human antisense chrX:103173814 chrX:103173813 . . 0 20 hm7G_associated_SNPs_30623 0 0 0 0 1 LOC100128594 chrX:103173875 5'GT 103173875 Upstream 63bp 28041 chr3 9786120 9786120 1 + C T COAD 9786121 + 9786101 9786141 41 TTCCCTGCGTCAGCGCAAGCGGGGTAGGAGCCCCCGGCCCA TTCCCTGCGTCAGCGCAAGTGGGGTAGGAGCCCCCGGCCCA < 41bp 0.518953956879699 0.726714934313606 NA NA prediction 0.415521954867814 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9786121 chr3:9786120 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30624 0 0 1 0 1 BRPF1 chr3:9786192 5'GT 9786192 Upstream 73bp 28042 chr15 75109005 75109005 1 + C T PAAD 75109006 + 75108986 75109026 41 TCCGTGTGCTGGCCAGCGACGGGCACATCCCCTCTGAGCAG TCCGTGTGCTGGCCAGCGATGGGCACATCCCCTCTGAGCAG < 41bp 0.506470067814601 0.714229075900326 NA NA prediction 0.41551801617145 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75109006 chr15:75109005 synonymous SNV . 0 20 hm7G_associated_SNPs_30625 0 0 0 0 2 LMAN1L chr15:75108973 3'AG 75108973 Downstream 33bp 28043 chr15 75109005 75109005 1 + C T PAAD 75109006 + 75108986 75109026 41 TCCGTGTGCTGGCCAGCGACGGGCACATCCCCTCTGAGCAG TCCGTGTGCTGGCCAGCGATGGGCACATCCCCTCTGAGCAG < 41bp 0.506470067814601 0.714229075900326 NA NA prediction 0.41551801617145 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75109006 chr15:75109005 synonymous SNV . 0 20 hm7G_associated_SNPs_30625 0 0 0 0 2 LMAN1L chr15:75109031 5'GT 75109031 Upstream 27bp 28044 chr16 5009352 5009352 1 + C T COAD 5009353 + 5009333 5009373 41 AAGATACCAGTCTCCTGTCCGAGTCTACAAGTACCCGTTTG AAGATACCAGTCTCCTGTCTGAGTCTACAAGTACCCGTTTG < 41bp 0.514554604365594 0.722313397052476 NA NA prediction 0.415517585373764 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5009353 chr16:5009352 stopgain 0.987 1 20 hm7G_associated_SNPs_30626 0 0 0 0 2 SEC14L5 chr16:5009274 3'AG 5009274 Downstream 79bp 28045 chr16 5009352 5009352 1 + C T COAD 5009353 + 5009333 5009373 41 AAGATACCAGTCTCCTGTCCGAGTCTACAAGTACCCGTTTG AAGATACCAGTCTCCTGTCTGAGTCTACAAGTACCCGTTTG < 41bp 0.514554604365594 0.722313397052476 NA NA prediction 0.415517585373764 Functional Gain - SEC14L5 ENSG00000103184 CDS Human protein_coding chr16:5009353 chr16:5009352 stopgain 0.987 1 20 hm7G_associated_SNPs_30626 0 0 0 0 2 SEC14L5 chr16:5009387 5'GT 5009387 Upstream 36bp 28046 chr14 24523641 24523641 1 + C T COAD 24523642 + 24523622 24523662 41 GCGTGGCATGGTGAGCATGCGACTGCCATCAGCTGAAAGTG GCGTGGCATGGTGAGCATGTGACTGCCATCAGCTGAAAGTG < 41bp 0.519018915433228 0.726776566935368 NA NA prediction 0.41551530300428 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24523642 chr14:24523641 stopgain 1.000 1 20 hm7G_associated_SNPs_30627 0 0 0 0 2 CARMIL3 chr14:24523605 3'AG 24523605 Downstream 37bp 28047 chr14 24523641 24523641 1 + C T COAD 24523642 + 24523622 24523662 41 GCGTGGCATGGTGAGCATGCGACTGCCATCAGCTGAAAGTG GCGTGGCATGGTGAGCATGTGACTGCCATCAGCTGAAAGTG < 41bp 0.519018915433228 0.726776566935368 NA NA prediction 0.41551530300428 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24523642 chr14:24523641 stopgain 1.000 1 20 hm7G_associated_SNPs_30627 0 0 0 0 2 CARMIL3 chr14:24523720 5'GT 24523720 Upstream 80bp 28048 chr6 107006448 107006448 1 + C T UCEC 107006449 + 107006429 107006469 41 TGCAGAAACTGTCAATCTCCGATCCCTGGGATTCAACACAC TGCAGAAACTGTCAATCTCTGATCCCTGGGATTCAACACAC < 41bp 0.500245541721121 0.708000163031048 NA NA prediction 0.415509242619853 Functional Gain - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:107006449 chr6:107006448 stopgain 0.997 0 20 hm7G_associated_SNPs_30629 0 0 0 0 2 CRYBG1 chr6:107006361 3'AG 107006361 Downstream 88bp 28049 chr6 107006448 107006448 1 + C T UCEC 107006449 + 107006429 107006469 41 TGCAGAAACTGTCAATCTCCGATCCCTGGGATTCAACACAC TGCAGAAACTGTCAATCTCTGATCCCTGGGATTCAACACAC < 41bp 0.500245541721121 0.708000163031048 NA NA prediction 0.415509242619853 Functional Gain - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:107006449 chr6:107006448 stopgain 0.997 0 20 hm7G_associated_SNPs_30629 0 0 0 0 2 CRYBG1 chr6:107006500 5'GT 107006500 Upstream 53bp 28050 chr1 109811555 109811555 1 + C T COAD 109811556 + 109811536 109811576 41 TGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGGG TGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTGGGG < 41bp 0.498238857564327 0.70775398356359 NA NA prediction 0.41550796712718 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811556 chr1:109811555 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_30630 0 0 1 0 2 CELSR2 chr1:109811502 3'AG 109811502 Downstream 54bp 28051 chr1 109811555 109811555 1 + C T COAD 109811556 + 109811536 109811576 41 TGCTGGGGCCAAGCTGCCCCGCTACGAGGCCCTGCGTGGGG TGCTGGGGCCAAGCTGCCCTGCTACGAGGCCCTGCGTGGGG < 41bp 0.498238857564327 0.70775398356359 NA NA prediction 0.41550796712718 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109811556 chr1:109811555 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_30630 0 0 1 0 2 CELSR2 chr1:109811630 5'GT 109811630 Upstream 76bp 28052 chr6 158497751 158497751 1 + C T COAD 158497752 + 158497732 158497772 41 CGATACAAGCGACAAATGCCGCACCCCCGCCTGGACAGACA CGATACAAGCGACAAATGCTGCACCCCCGCCTGGACAGACA < 41bp 0.520649720822591 0.728401828179484 NA NA prediction 0.415504214713787 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497752 chr6:158497751 nonsynonymous SNV 0.948 4 20 hm7G_associated_SNPs_30631 0 0 1 0 2 SYNJ2 chr6:158497658 3'AG 158497658 Downstream 94bp 28053 chr6 158497751 158497751 1 + C T COAD 158497752 + 158497732 158497772 41 CGATACAAGCGACAAATGCCGCACCCCCGCCTGGACAGACA CGATACAAGCGACAAATGCTGCACCCCCGCCTGGACAGACA < 41bp 0.520649720822591 0.728401828179484 NA NA prediction 0.415504214713787 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497752 chr6:158497751 nonsynonymous SNV 0.948 4 20 hm7G_associated_SNPs_30631 0 0 1 0 2 SYNJ2 chr6:158497814 5'GT 158497814 Upstream 64bp 28054 chr6 159178390 159178390 1 + C T GBM 159178391 + 159178371 159178411 41 CAGCACAACACAGTCCTTCCGCTGGCATCCGCTCCGGGCCA CAGCACAACACAGTCCTTCTGCTGGCATCCGCTCCGGGCCA < 41bp 0.533585883679282 0.74133615871463 NA NA prediction 0.415500550070697 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159178391 chr6:159178390 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_30632 0 0 0 0 1 SYTL3 chr6:159178413 5'GT 159178413 Upstream 24bp 28055 chrX 10094192 10094192 1 + C T STAD 10094193 + 10094173 10094213 41 CCCCCACTGGACTCGGGCACGCCCAACACTTACTGCTCCAA CCCCCACTGGACTCGGGCATGCCCAACACTTACTGCTCCAA < 41bp 0.529230134890661 0.736972397017648 NA NA prediction 0.415484524253975 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10094193 chrX:10094192 nonsynonymous SNV 0.008 4 20 hm7G_associated_SNPs_30636 0 0 0 0 1 WWC3 chrX:10094154 3'AG 10094154 Downstream 39bp 28056 chr16 31429642 31429642 1 + C T SKCM 31429643 + 31429623 31429663 41 GCACCTTCATAGTCACATTCGATGTCTCCTACAAGGCCACC GCACCTTCATAGTCACATTTGATGTCTCCTACAAGGCCACC < 41bp 0.517075698418798 0.724817726961717 NA NA prediction 0.415484057085839 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31429643 chr16:31429642 synonymous SNV . 0 20 hm7G_associated_SNPs_30637 0 0 0 0 2 ITGAD chr16:31429622 3'AG 31429622 Downstream 21bp 28057 chr16 31429642 31429642 1 + C T SKCM 31429643 + 31429623 31429663 41 GCACCTTCATAGTCACATTCGATGTCTCCTACAAGGCCACC GCACCTTCATAGTCACATTTGATGTCTCCTACAAGGCCACC < 41bp 0.517075698418798 0.724817726961717 NA NA prediction 0.415484057085839 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31429643 chr16:31429642 synonymous SNV . 0 20 hm7G_associated_SNPs_30637 0 0 0 0 2 ITGAD chr16:31429701 5'GT 31429701 Upstream 60bp 28058 chr7 128355645 128355645 1 + G T BLCA 128355646 + 128355626 128355666 41 GAGAGCCGAACCCTGGAGCGGGCCTAGGTGTGGAGGAGGGA GAGAGCCGAACCCTGGAGCTGGCCTAGGTGTGGAGGAGGGA < 41bp 0.697504409865702 0.905245633045212 NA NA prediction 0.415482446359021 Functional Gain - FAM71F1 ENSG00000135248 CDS Human protein_coding chr7:128355646 chr7:128355645 synonymous SNV . 0 20 hm7G_associated_SNPs_30638 0 0 0 0 1 FAM71F1 chr7:128355744 5'GT 128355744 Upstream 100bp 28059 chr19 45322051 45322051 1 + C T SKCM 45322052 + 45322032 45322072 41 CGCTCAGTTCTATCACCTTCGATTCCAATGGCACCTACGTA CGCTCAGTTCTATCACCTTTGATTCCAATGGCACCTACGTA < 41bp 0.506460867590039 0.714200109617776 NA NA prediction 0.415478484055474 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45322052 chr19:45322051 synonymous SNV . 0 20 hm7G_associated_SNPs_30639 0 0 0 0 2 BCAM chr19:45321998 3'AG 45321998 Downstream 54bp 28060 chr19 45322051 45322051 1 + C T SKCM 45322052 + 45322032 45322072 41 CGCTCAGTTCTATCACCTTCGATTCCAATGGCACCTACGTA CGCTCAGTTCTATCACCTTTGATTCCAATGGCACCTACGTA < 41bp 0.506460867590039 0.714200109617776 NA NA prediction 0.415478484055474 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45322052 chr19:45322051 synonymous SNV . 0 20 hm7G_associated_SNPs_30639 0 0 0 0 2 BCAM chr19:45322139 5'GT 45322139 Upstream 89bp 28061 chr10 73053200 73053200 1 + C T SKCM 73053201 + 73053181 73053221 41 CAGACAGTATTGAGCCCCTCGGTGACCTGTGGACCCACAGG CAGACAGTATTGAGCCCCTTGGTGACCTGTGGACCCACAGG < 41bp 0.524005655463795 0.731744669114172 NA NA prediction 0.415478027300755 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73053201 chr10:73053200 nonsynonymous SNV 0.906 1 20 hm7G_associated_SNPs_30640 0 0 1 0 1 UNC5B chr10:73053162 3'AG 73053162 Downstream 39bp 28062 chr16 31230642 31230642 1 + G A SKCM 31230643 + 31230623 31230663 41 AGTTCCGGGGGGCCGTGGGGGAGCAGCTGGGCAAGATGCGG AGTTCCGGGGGGCCGTGGGAGAGCAGCTGGGCAAGATGCGG < 41bp 0.537122120135619 0.744861048767896 NA NA prediction 0.415477857264555 Functional Gain - TRIM72 ENSG00000177238 CDS Human protein_coding chr16:31230643 chr16:31230642 synonymous SNV . 0 20 hm7G_associated_SNPs_30641 0 0 1 0 1 TRIM72 chr16:31230610 3'AG 31230610 Downstream 33bp 28063 chr7 128478755 128478755 1 + C T COAD 128478756 + 128478736 128478776 41 CAAGGGTGACAGCACGTTCCGCTGCACATACAGACCTGCCA CAAGGGTGACAGCACGTTCTGCTGCACATACAGACCTGCCA < 41bp 0.521831489468254 0.729564766979847 NA NA prediction 0.415466555023186 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128478756 chr7:128478755 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_30645 0 0 1 0 1 FLNC chr7:128478657 3'AG 128478657 Downstream 99bp 28064 chr16 83994304 83994304 1 + G A SKCM 83994305 + 83994285 83994325 41 GTCCTCACCTGGAAGCACCGGAAGGAGCACGCCATCCCCCA GTCCTCACCTGGAAGCACCAGAAGGAGCACGCCATCCCCCA < 41bp 0.528419382062048 0.736149951582656 NA NA prediction 0.415461139041217 Functional Gain - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83994305 chr16:83994304 nonsynonymous SNV 0.583 0 20 hm7G_associated_SNPs_30649 0 0 0 0 1 OSGIN1 chr16:83994365 5'GT 83994365 Upstream 62bp 28065 chr8 26481666 26481666 1 + C T rs113199330 26481667 + 26481647 26481687 41 GTTTCTTTCTAGTTGACCACGTTGTTCCTGAGCCTGGGACA GTTTCTTTCTAGTTGACCATGTTGTTCCTGAGCCTGGGACA < 41bp 0.506270649023884 0.71399756212428 NA NA prediction 0.415453826200791 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26481667 chr8:26481666 synonymous SNV . 0 20 hm7G_associated_SNPs_30650 0 0 1 0 1 DPYSL2 chr8:26481659 3'AG 26481659 Downstream 8bp 28066 chr18 72180891 72180891 1 + C T SKCM 72180892 + 72180872 72180912 41 ACAAGCTGTACGACGACATCGACTTTGACATAGAGGAGTTT ACAAGCTGTACGACGACATTGACTTTGACATAGAGGAGTTT < 41bp 0.514490537953995 0.722216771256062 NA NA prediction 0.415452466604133 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72180892 chr18:72180891 synonymous SNV . 0 20 hm7G_associated_SNPs_30651 0 0 0 0 2 CNDP2 chr18:72180794 3'AG 72180794 Downstream 98bp 28067 chr18 72180891 72180891 1 + C T SKCM 72180892 + 72180872 72180912 41 ACAAGCTGTACGACGACATCGACTTTGACATAGAGGAGTTT ACAAGCTGTACGACGACATTGACTTTGACATAGAGGAGTTT < 41bp 0.514490537953995 0.722216771256062 NA NA prediction 0.415452466604133 Functional Gain - CNDP2 ENSG00000133313 CDS Human protein_coding chr18:72180892 chr18:72180891 synonymous SNV . 0 20 hm7G_associated_SNPs_30651 0 0 0 0 2 CNDP2 chr18:72180954 5'GT 72180954 Upstream 64bp 28068 chr3 183504074 183504074 1 + C T UCEC 183504075 + 183504055 183504095 41 CCGTGGCCCTCTCAGCAAACGGTCCTGCACAACAGGTGAGA CCGTGGCCCTCTCAGCAAATGGTCCTGCACAACAGGTGAGA < 41bp 0.535024038848147 0.742746945745375 NA NA prediction 0.415445813794456 Functional Gain - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183504075 chr3:183504074 synonymous SNV . 0 20 hm7G_associated_SNPs_30654 0 0 1 0 1 YEATS2 chr3:183504089 5'GT 183504089 Upstream 16bp 28069 chrX 65393595 65393595 1 + C T UCEC 65393596 + 65393576 65393616 41 TTCTCATGTAGATGCTCCACGAGACATTGCAACTGGCCTAA TTCTCATGTAGATGCTCCATGAGACATTGCAACTGGCCTAA < 41bp 0.497739740583991 0.707720654339953 NA NA prediction 0.415441308679906 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65393596 chrX:65393595 stopgain 0.998 1 20 hm7G_associated_SNPs_30655 0 0 1 0 1 HEPH chrX:65393643 5'GT 65393643 Upstream 49bp 28070 chr11 541605 541605 1 + G A SKCM 541606 + 541586 541626 41 TGTGTGTGGACACTCGTGAGGGCAGCCTGGGGAACTTTGGT TGTGTGTGGACACTCGTGAAGGCAGCCTGGGGAACTTTGGT < 41bp 0.555790774644416 0.763511166468746 NA NA prediction 0.41544078364866 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:541606 chr11:541605 synonymous SNV . 0 20 hm7G_associated_SNPs_30656 0 0 0 0 2 LRRC56 chr11:541537 3'AG 541537 Downstream 69bp 28071 chr11 541605 541605 1 + G A SKCM 541606 + 541586 541626 41 TGTGTGTGGACACTCGTGAGGGCAGCCTGGGGAACTTTGGT TGTGTGTGGACACTCGTGAAGGCAGCCTGGGGAACTTTGGT < 41bp 0.555790774644416 0.763511166468746 NA NA prediction 0.41544078364866 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:541606 chr11:541605 synonymous SNV . 0 20 hm7G_associated_SNPs_30656 0 0 0 0 2 LRRC56 chr11:541624 5'GT 541624 Upstream 20bp 28072 chr12 49948322 49948322 1 + G A SARC 49948323 + 49948303 49948343 41 GCTACAACCTGGGTGCTGGGGGAGGCTCTGCAGAGGTGAGT GCTACAACCTGGGTGCTGGAGGAGGCTCTGCAGAGGTGAGT < 41bp 0.487504854145687 0.707718454708434 NA NA prediction 0.415436909416869 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49948323 chr12:49948322 synonymous SNV . 0 20 hm7G_associated_SNPs_30659 0 0 0 0 1 KCNH3 chr12:49948337 5'GT 49948337 Upstream 16bp 28073 chr1 203672793 203672793 1 + C T CESC 203672794 + 203672774 203672814 41 CTCCAGCAAAGACCCAAGACGGAGTGGCCCTGGAAATCCAG CTCCAGCAAAGACCCAAGATGGAGTGGCCCTGGAAATCCAG < 41bp 0.540283841085784 0.747997512175671 NA NA prediction 0.415427342179774 Functional Gain - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203672794 chr1:203672793 synonymous SNV . 0 20 hm7G_associated_SNPs_30662 0 0 1 0 1 ATP2B4 chr1:203672780 3'AG 203672780 Downstream 14bp 28074 chr10 72285718 72285718 1 + C T STAD 72285719 + 72285699 72285739 41 TGGCAGACTATGGGTACAACGGCCAGCACAGCCCAGCAGAC TGGCAGACTATGGGTACAATGGCCAGCACAGCCCAGCAGAC < 41bp 0.524414301035709 0.732125071358855 NA NA prediction 0.415421540646292 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72285719 chr10:72285718 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30663 0 0 0 0 1 PALD1 chr10:72285679 3'AG 72285679 Downstream 40bp 28075 chr22 18031748 18031748 1 + C T SKCM 18031749 + 18031729 18031769 41 CCGGTCCAGTCGCAGGCCTCGTTCCCAAAGACCCCCACAGC CCGGTCCAGTCGCAGGCCTTGTTCCCAAAGACCCCCACAGC < 41bp 0.505694990507961 0.713400937257949 NA NA prediction 0.415411893499976 Functional Gain - CECR2 ENSG00000099954 CDS Human protein_coding chr22:18031749 chr22:18031748 nonsynonymous SNV 0.739 0 20 hm7G_associated_SNPs_30666 0 0 0 0 2 CECR2 chr22:18031716 3'AG 18031716 Downstream 33bp 28076 chr22 18031748 18031748 1 + C T SKCM 18031749 + 18031729 18031769 41 CCGGTCCAGTCGCAGGCCTCGTTCCCAAAGACCCCCACAGC CCGGTCCAGTCGCAGGCCTTGTTCCCAAAGACCCCCACAGC < 41bp 0.505694990507961 0.713400937257949 NA NA prediction 0.415411893499976 Functional Gain - CECR2 ENSG00000099954 CDS Human protein_coding chr22:18031749 chr22:18031748 nonsynonymous SNV 0.739 0 20 hm7G_associated_SNPs_30666 0 0 0 0 2 CECR2 chr22:18031827 5'GT 18031827 Upstream 80bp 28077 chr4 72205110 72205110 1 + C T BLCA 72205111 + 72205091 72205131 41 TCCTGCTGCAGAACGCATCCGATTCATCTTGGGAGAGGAGG TCCTGCTGCAGAACGCATCTGATTCATCTTGGGAGAGGAGG < 41bp 0.501619207023675 0.709322474891003 NA NA prediction 0.415406535734654 Functional Gain - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72205111 chr4:72205110 stopgain 1.000 1 20 hm7G_associated_SNPs_30669 0 0 0 0 1 SLC4A4 chr4:72205087 3'AG 72205087 Downstream 24bp 28078 chr3 128982800 128982800 1 + C T STAD 128982801 + 128982781 128982821 41 AGAAATATCCTCGCAAACACGCCGTCCTTATGAACTTCCTG AGAAATATCCTCGCAAACATGCCGTCCTTATGAACTTCCTG < 41bp 0.50934977593546 0.717049130485319 NA NA prediction 0.415398709099719 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128982801 chr3:128982800 synonymous SNV . 0 20 hm7G_associated_SNPs_30671 0 0 1 0 2 COPG1 chr3:128982747 3'AG 128982747 Downstream 54bp 28079 chr3 128982800 128982800 1 + C T STAD 128982801 + 128982781 128982821 41 AGAAATATCCTCGCAAACACGCCGTCCTTATGAACTTCCTG AGAAATATCCTCGCAAACATGCCGTCCTTATGAACTTCCTG < 41bp 0.50934977593546 0.717049130485319 NA NA prediction 0.415398709099719 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128982801 chr3:128982800 synonymous SNV . 0 20 hm7G_associated_SNPs_30671 0 0 1 0 2 COPG1 chr3:128982842 5'GT 128982842 Upstream 43bp 28080 chr19 45911436 45911436 1 + G A rs150994935 45911437 + 45911417 45911457 41 CTGGCTCCCAGATCGTCAAGGGCAAATTGGCAGGCAAGCGG CTGGCTCCCAGATCGTCAAAGGCAAATTGGCAGGCAAGCGG < 41bp 0.543512050230337 0.751210507469545 NA NA prediction 0.415396914478417 Functional Gain - CD3EAP ENSG00000117877 CDS Human protein_coding chr19:45911437 chr19:45911436 synonymous SNV . 0 20 hm7G_associated_SNPs_30673 0 0 1 0 1 CD3EAP chr19:45911391 3'AG 45911391 Downstream 46bp 28081 chr9 96416802 96416802 1 + C T UCEC 96416803 + 96416783 96416823 41 TGTTCTTTGCTGACCAGGTCGACAAATGCTACAAGTGCATC TGTTCTTTGCTGACCAGGTTGACAAATGCTACAAGTGCATC < 41bp 0.489422961734574 0.707693803867645 NA NA prediction 0.415387607735289 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96416803 chr9:96416802 synonymous SNV . 0 20 hm7G_associated_SNPs_30677 0 0 1 0 1 PHF2 chr9:96416857 5'GT 96416857 Upstream 56bp 28082 chr12 13208788 13208788 1 + C T UCEC 13208789 + 13208769 13208809 41 CTGCTGACTTTGGGGATCTCGATGATCCTGGTGCTCCTGTG CTGCTGACTTTGGGGATCTTGATGATCCTGGTGCTCCTGTG < 41bp 0.546999531508891 0.754691219891834 NA NA prediction 0.415383376765886 Functional Gain - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13208789 chr12:13208788 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_30679 0 0 1 3 1 FAM234B chr12:13208880 5'GT 13208880 Upstream 93bp 28083 chr9 19336323 19336323 1 + C T rs76083810 19336324 + 19336304 19336344 41 AGTGGTATTTTCTTATGGACGAAGGTACGGAATGTGGTACG AGTGGTATTTTCTTATGGATGAAGGTACGGAATGTGGTACG < 41bp 0.505752772544968 0.713443979828402 NA NA prediction 0.415382414566868 Functional Gain - DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336324 chr9:19336323 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30680 0 0 1 0 2 DENND4C chr9:19336268 3'AG 19336268 Downstream 56bp 28084 chr9 19336323 19336323 1 + C T rs76083810 19336324 + 19336304 19336344 41 AGTGGTATTTTCTTATGGACGAAGGTACGGAATGTGGTACG AGTGGTATTTTCTTATGGATGAAGGTACGGAATGTGGTACG < 41bp 0.505752772544968 0.713443979828402 NA NA prediction 0.415382414566868 Functional Gain - DENND4C ENSG00000137145 CDS Human protein_coding chr9:19336324 chr9:19336323 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30680 0 0 1 0 2 DENND4C chr9:19336412 5'GT 19336412 Upstream 90bp 28085 chr2 160005663 160005663 1 + C T rs201833605 160005664 + 160005644 160005684 41 TTGTTCCAGAAGCAAAGGCCGATAATGAACCGAGCTGTTCG TTGTTCCAGAAGCAAAGGCTGATAATGAACCGAGCTGTTCG < 41bp 0.509125054516824 0.716815506475118 NA NA prediction 0.415380903916588 Functional Gain - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160005664 chr2:160005663 synonymous SNV . 0 20 hm7G_associated_SNPs_30682 0 0 0 0 2 TANC1 chr2:160005653 3'AG 160005653 Downstream 11bp 28086 chr2 160005663 160005663 1 + C T rs201833605 160005664 + 160005644 160005684 41 TTGTTCCAGAAGCAAAGGCCGATAATGAACCGAGCTGTTCG TTGTTCCAGAAGCAAAGGCTGATAATGAACCGAGCTGTTCG < 41bp 0.509125054516824 0.716815506475118 NA NA prediction 0.415380903916588 Functional Gain - TANC1 ENSG00000115183 CDS Human protein_coding chr2:160005664 chr2:160005663 synonymous SNV . 0 20 hm7G_associated_SNPs_30682 0 0 0 0 2 TANC1 chr2:160005656 3'AG 160005656 Downstream 8bp 28087 chr14 57082686 57082686 1 + C T LIHC 57082687 + 57082667 57082707 41 AAGTAACAAATATGAGGACCGAACTCTCATTCAACATCCAA AAGTAACAAATATGAGGACTGAACTCTCATTCAACATCCAA < 41bp 0.511247845669744 0.718937509104387 NA NA prediction 0.415379326869285 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57082687 chr14:57082686 synonymous SNV . 0 20 hm7G_associated_SNPs_30683 0 0 1 1 2 TMEM260 chr14:57082662 3'AG 57082662 Downstream 25bp 28088 chr14 57082686 57082686 1 + C T LIHC 57082687 + 57082667 57082707 41 AAGTAACAAATATGAGGACCGAACTCTCATTCAACATCCAA AAGTAACAAATATGAGGACTGAACTCTCATTCAACATCCAA < 41bp 0.511247845669744 0.718937509104387 NA NA prediction 0.415379326869285 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57082687 chr14:57082686 synonymous SNV . 0 20 hm7G_associated_SNPs_30683 0 0 1 1 2 TMEM260 chr14:57082745 5'GT 57082745 Upstream 60bp 28089 chr6 14131843 14131843 1 + C T COAD 14131844 + 14131824 14131864 41 AGGGGCAAAATGGTTCTTTCGACGCCCCCAATGAAAGGCCC AGGGGCAAAATGGTTCTTTTGACGCCCCCAATGAAAGGCCC < 41bp 0.495821858738195 0.707689581298894 NA NA prediction 0.415379162597788 Functional Gain - CD83 ENSG00000112149 CDS Human protein_coding chr6:14131844 chr6:14131843 synonymous SNV . 0 20 hm7G_associated_SNPs_30684 0 0 0 0 1 CD83 chr6:14131751 3'AG 14131751 Downstream 93bp 28090 chr12 50481152 50481152 1 + C T STAD 50481153 + 50481133 50481173 41 CTGCCTTCCTCAGCAAAAACGGAAGCTGCGAATTTTCATTT CTGCCTTCCTCAGCAAAAATGGAAGCTGCGAATTTTCATTT < 41bp 0.49475148393414 0.707686555088233 NA NA prediction 0.415373110176466 Functional Gain - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50481153 chr12:50481152 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30685 0 0 1 0 1 SMARCD1 chr12:50481146 3'AG 50481146 Downstream 7bp 28091 chr4 15554924 15554924 1 + C T UCEC 15554925 + 15554905 15554945 41 ACAGCAGAACATCGGATTTCGGAGGTAATACATGGCAAGAG ACAGCAGAACATCGGATTTTGGAGGTAATACATGGCAAGAG < 41bp 0.50901066775607 0.716697063652126 NA NA prediction 0.41537279179211 Functional Gain - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15554925 chr4:15554924 nonsynonymous SNV 0.959 2 20 hm7G_associated_SNPs_30686 2 0 0 0 1 CC2D2A chr4:15554928 5'GT 15554928 Upstream 5bp 28092 chr18 61151687 61151687 1 + C T BLCA 61151688 + 61151668 61151708 41 GCCCTGCAACTAGCAAATTCGGCTTTTGCCGTTGATCTGTT GCCCTGCAACTAGCAAATTTGGCTTTTGCCGTTGATCTGTT < 41bp 0.506283024145149 0.713968097393924 NA NA prediction 0.415370146497549 Functional Gain - SERPINB5 ENSG00000206075 CDS Human protein_coding chr18:61151688 chr18:61151687 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_30687 0 0 0 0 1 SERPINB5 chr18:61151655 3'AG 61151655 Downstream 33bp 28093 chr2 238451259 238451259 1 + C T UCEC 238451260 + 238451240 238451280 41 CTGAGGGCCGCAGGGCTCACGGTGAAGCCCTCGGGAAAGCC CTGAGGGCCGCAGGGCTCATGGTGAAGCCCTCGGGAAAGCC < 41bp 0.527212451170214 0.73489404252423 NA NA prediction 0.415363182708031 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238451260 chr2:238451259 nonsynonymous SNV 0.026 3 20 hm7G_associated_SNPs_30688 0 0 0 0 2 MLPH chr2:238451210 3'AG 238451210 Downstream 50bp 28094 chr2 238451259 238451259 1 + C T UCEC 238451260 + 238451240 238451280 41 CTGAGGGCCGCAGGGCTCACGGTGAAGCCCTCGGGAAAGCC CTGAGGGCCGCAGGGCTCATGGTGAAGCCCTCGGGAAAGCC < 41bp 0.527212451170214 0.73489404252423 NA NA prediction 0.415363182708031 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238451260 chr2:238451259 nonsynonymous SNV 0.026 3 20 hm7G_associated_SNPs_30688 0 0 0 0 2 MLPH chr2:238451302 5'GT 238451302 Upstream 44bp 28095 chr16 31141659 31141659 1 + C T LGG 31141660 + 31141640 31141680 41 CCTACCAACGCCGCGGCTACGGGAAGTTCCTCATCGCTTTC CCTACCAACGCCGCGGCTATGGGAAGTTCCTCATCGCTTTC < 41bp 0.516153295201962 0.723833255627999 NA NA prediction 0.415359920852074 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31141660 chr16:31141659 synonymous SNV . 0 20 hm7G_associated_SNPs_30689 0 0 1 0 2 KAT8 chr16:31141588 3'AG 31141588 Downstream 72bp 28096 chr16 31141659 31141659 1 + C T LGG 31141660 + 31141640 31141680 41 CCTACCAACGCCGCGGCTACGGGAAGTTCCTCATCGCTTTC CCTACCAACGCCGCGGCTATGGGAAGTTCCTCATCGCTTTC < 41bp 0.516153295201962 0.723833255627999 NA NA prediction 0.415359920852074 Functional Gain - KAT8 ENSG00000103510 CDS Human protein_coding chr16:31141660 chr16:31141659 synonymous SNV . 0 20 hm7G_associated_SNPs_30689 0 0 1 0 2 KAT8 chr16:31141681 5'GT 31141681 Upstream 23bp 28097 chr11 61487659 61487659 1 + G A UCEC 61487660 + 61487640 61487680 41 GTGGTGTTCCGGCGGCGCTGGTCTGTGGGCAGTGATGACCT GTGGTGTTCCGGCGGCGCTAGTCTGTGGGCAGTGATGACCT < 41bp 0.536519111253152 0.744194241056118 NA NA prediction 0.415350259605932 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61487660 chr11:61487659 stopgain 1.000 1 20 hm7G_associated_SNPs_30692 0 0 1 0 2 DAGLA chr11:61487584 3'AG 61487584 Downstream 76bp 28098 chr11 61487659 61487659 1 + G A UCEC 61487660 + 61487640 61487680 41 GTGGTGTTCCGGCGGCGCTGGTCTGTGGGCAGTGATGACCT GTGGTGTTCCGGCGGCGCTAGTCTGTGGGCAGTGATGACCT < 41bp 0.536519111253152 0.744194241056118 NA NA prediction 0.415350259605932 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61487660 chr11:61487659 stopgain 1.000 1 20 hm7G_associated_SNPs_30692 0 0 1 0 2 DAGLA chr11:61487722 5'GT 61487722 Upstream 64bp 28099 chr19 55798457 55798457 1 + G A UCEC 55798458 + 55798438 55798478 41 GGGAGAAGCTGTCGGAGTCGGTGCTGATGAAGGTGTGTGCG GGGAGAAGCTGTCGGAGTCAGTGCTGATGAAGGTGTGTGCG < 41bp 0.525946435813094 0.733620932945627 NA NA prediction 0.415348994265067 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55798458 chr19:55798457 synonymous SNV . 0 20 hm7G_associated_SNPs_30693 0 0 1 0 2 BRSK1 chr19:55798375 3'AG 55798375 Downstream 83bp 28100 chr19 55798457 55798457 1 + G A UCEC 55798458 + 55798438 55798478 41 GGGAGAAGCTGTCGGAGTCGGTGCTGATGAAGGTGTGTGCG GGGAGAAGCTGTCGGAGTCAGTGCTGATGAAGGTGTGTGCG < 41bp 0.525946435813094 0.733620932945627 NA NA prediction 0.415348994265067 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55798458 chr19:55798457 synonymous SNV . 0 20 hm7G_associated_SNPs_30693 0 0 1 0 2 BRSK1 chr19:55798469 5'GT 55798469 Upstream 13bp 28101 chr3 47050102 47050102 1 + G T UCEC 47050103 + 47050083 47050123 41 CAGCCCTGACGGTGACAGAGGACTTTGTGTTGCTGGGCACC CAGCCCTGACGGTGACAGATGACTTTGTGTTGCTGGGCACC < 41bp 0.363465532483045 0.707673964788335 NA NA prediction 0.415347929576669 Functional Gain - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47050103 chr3:47050102 nonsynonymous SNV 0.888 0 20 hm7G_associated_SNPs_30694 0 0 1 0 2 NBEAL2 chr3:47050010 3'AG 47050010 Downstream 93bp 28102 chr3 47050102 47050102 1 + G T UCEC 47050103 + 47050083 47050123 41 CAGCCCTGACGGTGACAGAGGACTTTGTGTTGCTGGGCACC CAGCCCTGACGGTGACAGATGACTTTGTGTTGCTGGGCACC < 41bp 0.363465532483045 0.707673964788335 NA NA prediction 0.415347929576669 Functional Gain - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47050103 chr3:47050102 nonsynonymous SNV 0.888 0 20 hm7G_associated_SNPs_30694 0 0 1 0 2 NBEAL2 chr3:47050158 5'GT 47050158 Upstream 57bp 28103 chr19 3273914 3273914 1 + C T LUAD 3273915 + 3273895 3273935 41 CTGCGGACAGTGAAAGCCGCGGAGGTAGTTGTCATCTCTCC CTGCGGACAGTGAAAGCCGTGGAGGTAGTTGTCATCTCTCC < 41bp 0.493589949999848 0.707672503294402 NA NA prediction 0.415345006588804 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3273915 chr19:3273914 synonymous SNV . 0 20 hm7G_associated_SNPs_30695 0 0 0 0 1 CELF5 chr19:3273921 5'GT 3273921 Upstream 8bp 28104 chr11 118250219 118250219 1 + C T UCEC 118250220 + 118250200 118250240 41 TCGGCTGCAGGTTGCCTGGCGGGATGCTCAGCAAAGTTCTA TCGGCTGCAGGTTGCCTGGTGGGATGCTCAGCAAAGTTCTA < 41bp 0.529051245865841 0.736723473580064 NA NA prediction 0.415344455428445 Functional Gain - UBE4A ENSG00000110344 CDS Human protein_coding chr11:118250220 chr11:118250219 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_30696 0 0 1 0 1 UBE4A chr11:118250161 3'AG 118250161 Downstream 59bp 28105 chr20 33855097 33855097 1 + C T CESC 33855098 + 33855078 33855118 41 ATCGGAGAGGAAACACGAGCGCCAGCCCAGGCCCCCTCGGC ATCGGAGAGGAAACACGAGTGCCAGCCCAGGCCCCCTCGGC < 41bp 0.516776850102116 0.724446127078733 NA NA prediction 0.415338553953235 Functional Gain - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33855098 chr20:33855097 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_30699 0 0 0 0 1 MMP24 chr20:33855008 3'AG 33855008 Downstream 90bp 28106 chr21 37775127 37775127 1 + C T rs139980774 37775128 + 37775108 37775148 41 GACTGAGTTTCACTCCCGACGGATCTTTGCTTCTCACGCCA GACTGAGTTTCACTCCCGATGGATCTTTGCTTCTCACGCCA < 41bp 0.523243250772098 0.730911679604749 NA NA prediction 0.415336857665301 Functional Gain - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37775128 chr21:37775127 synonymous SNV . 0 20 hm7G_associated_SNPs_30700 0 0 1 0 2 CHAF1B chr21:37775056 3'AG 37775056 Downstream 72bp 28107 chr21 37775127 37775127 1 + C T rs139980774 37775128 + 37775108 37775148 41 GACTGAGTTTCACTCCCGACGGATCTTTGCTTCTCACGCCA GACTGAGTTTCACTCCCGATGGATCTTTGCTTCTCACGCCA < 41bp 0.523243250772098 0.730911679604749 NA NA prediction 0.415336857665301 Functional Gain - CHAF1B ENSG00000159259 CDS Human protein_coding chr21:37775128 chr21:37775127 synonymous SNV . 0 20 hm7G_associated_SNPs_30700 0 0 1 0 2 CHAF1B chr21:37775149 5'GT 37775149 Upstream 23bp 28108 chr1 153750310 153750310 1 + G A rs142529437 153750311 + 153750291 153750331 41 GCCAGCAGCACAGGGTGACGGTGTTCCAGTACATTGGGGAG GCCAGCAGCACAGGGTGACAGTGTTCCAGTACATTGGGGAG < 41bp 0.52120328916778 0.728869102959825 NA NA prediction 0.41533162758409 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750311 chr1:153750310 synonymous SNV . 0 20 hm7G_associated_SNPs_30702 0 0 0 0 2 SLC27A3 chr1:153750237 3'AG 153750237 Downstream 74bp 28109 chr1 153750310 153750310 1 + G A rs142529437 153750311 + 153750291 153750331 41 GCCAGCAGCACAGGGTGACGGTGTTCCAGTACATTGGGGAG GCCAGCAGCACAGGGTGACAGTGTTCCAGTACATTGGGGAG < 41bp 0.52120328916778 0.728869102959825 NA NA prediction 0.41533162758409 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750311 chr1:153750310 synonymous SNV . 0 20 hm7G_associated_SNPs_30702 0 0 0 0 2 SLC27A3 chr1:153750361 5'GT 153750361 Upstream 52bp 28110 chr5 131724667 131724667 1 + C T UCEC 131724668 + 131724648 131724688 41 CAACATTCTGGATCTGCTTCGAACCTGGAATATCCGGATGG CAACATTCTGGATCTGCTTTGAACCTGGAATATCCGGATGG < 41bp 0.52579779045447 0.733455978090069 NA NA prediction 0.415316375271198 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131724668 chr5:131724667 stopgain 0.462 0 20 hm7G_associated_SNPs_30705 0 0 0 0 2 SLC22A5 chr5:131724613 3'AG 131724613 Downstream 55bp 28111 chr5 131724667 131724667 1 + C T UCEC 131724668 + 131724648 131724688 41 CAACATTCTGGATCTGCTTCGAACCTGGAATATCCGGATGG CAACATTCTGGATCTGCTTTGAACCTGGAATATCCGGATGG < 41bp 0.52579779045447 0.733455978090069 NA NA prediction 0.415316375271198 Functional Gain - SLC22A5 ENSG00000197375 CDS Human protein_coding chr5:131724668 chr5:131724667 stopgain 0.462 0 20 hm7G_associated_SNPs_30705 0 0 0 0 2 SLC22A5 chr5:131724713 5'GT 131724713 Upstream 47bp 28112 chr10 5951256 5951256 1 + G A SKCM 5951257 + 5951237 5951277 41 GACCTCTACGCTGCTGCCGGGGTAGGTCTGGAGGCTGCGGG GACCTCTACGCTGCTGCCGAGGTAGGTCTGGAGGCTGCGGG < 41bp 0.543255261030285 0.750909603484661 NA NA prediction 0.415308684908752 Functional Gain - FBXO18 ENSG00000134452 CDS Human protein_coding chr10:5951257 chr10:5951256 nonsynonymous SNV 0.080 1 20 hm7G_associated_SNPs_30706 0 0 1 0 1 FBXO18 chr10:5951257 5'GT 5951257 Upstream 2bp 28113 chr12 112191618 112191618 1 + G A LUSC 112191619 + 112191599 112191639 41 GAAGCCCCTGGTGGAGCAGGGCACAGTGCTGGCGGACATCG GAAGCCCCTGGTGGAGCAGAGCACAGTGCTGGCGGACATCG < 41bp 0.534107338808956 0.741761467995442 NA NA prediction 0.415308258372971 Functional Gain - ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112191619 chr12:112191618 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_30707 0 0 1 0 1 ACAD10 chr12:112191576 3'AG 112191576 Downstream 43bp 28114 chr16 89597162 89597162 1 + G A LUSC 89597163 + 89597143 89597183 41 GAGTCAGCTTCAAAGACGTGGCAGGAATGCACGAAGCCAAA GAGTCAGCTTCAAAGACGTAGCAGGAATGCACGAAGCCAAA < 41bp 0.531864743264511 0.739518656819937 NA NA prediction 0.415307827110851 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89597163 chr16:89597162 synonymous SNV . 0 20 hm7G_associated_SNPs_30708 0 0 1 0 2 SPG7 chr16:89597091 3'AG 89597091 Downstream 72bp 28115 chr16 89597162 89597162 1 + G A LUSC 89597163 + 89597143 89597183 41 GAGTCAGCTTCAAAGACGTGGCAGGAATGCACGAAGCCAAA GAGTCAGCTTCAAAGACGTAGCAGGAATGCACGAAGCCAAA < 41bp 0.531864743264511 0.739518656819937 NA NA prediction 0.415307827110851 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89597163 chr16:89597162 synonymous SNV . 0 20 hm7G_associated_SNPs_30708 0 0 1 0 2 SPG7 chr16:89597216 5'GT 89597216 Upstream 55bp 28116 chr1 22846616 22846616 1 + C T UCEC 22846617 + 22846597 22846637 41 CCCCACTCTTCAGGATCACCGGAAGCACATCCATGAGGTGC CCCCACTCTTCAGGATCACTGGAAGCACATCCATGAGGTGC < 41bp 0.516621962982109 0.724274733171464 NA NA prediction 0.415305540378709 Functional Gain - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22846617 chr1:22846616 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30709 0 0 1 0 1 ZBTB40 chr1:22846554 3'AG 22846554 Downstream 63bp 28117 chr4 509816 509816 1 + C T UCEC 509817 + 509797 509837 41 GATGTGGCTGCGACACTGGCGATAGCACTTGGCTTACCGAT GATGTGGCTGCGACACTGGTGATAGCACTTGGCTTACCGAT < 41bp 0.54265539699613 0.750305663339711 NA NA prediction 0.415300532687161 Functional Gain - PIGG ENSG00000174227 CDS Human protein_coding chr4:509817 chr4:509816 nonsynonymous SNV 0.048 4 20 hm7G_associated_SNPs_30710 0 0 1 12 1 PIGG chr4:509762 3'AG 509762 Downstream 55bp 28118 chr19 45385511 45385511 1 + C T GBM 45385512 + 45385492 45385532 41 GGGCCACAGGCGGCATCATCGGGGGCATCATCGCCGCCATC GGGCCACAGGCGGCATCATTGGGGGCATCATCGCCGCCATC < 41bp 0.527051782466743 0.73469657950492 NA NA prediction 0.415289594076354 Functional Gain - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45385512 chr19:45385511 synonymous SNV . 0 20 hm7G_associated_SNPs_30713 0 0 0 0 1 NECTIN2 chr19:45385468 3'AG 45385468 Downstream 44bp 28119 chr21 47850006 47850006 1 + G T UCEC 47850007 + 47849987 47850027 41 TGAGTGAAGAGCAAGAGAAGGCAAACAGCGTGCAGAAGCTC TGAGTGAAGAGCAAGAGAATGCAAACAGCGTGCAGAAGCTC < 41bp 0.363249571346264 0.707644119535098 NA NA prediction 0.415288239070196 Functional Gain - PCNT ENSG00000160299 CDS Human protein_coding chr21:47850007 chr21:47850006 nonsynonymous SNV 0.076 2 20 hm7G_associated_SNPs_30714 0 0 0 0 1 PCNT chr21:47849924 3'AG 47849924 Downstream 83bp 28120 chr9 133543671 133543671 1 + G A GBM 133543672 + 133543652 133543692 41 CCTGGAGGTGGTCCAGATCGGCACCAGCATCTTCTACAAGG CCTGGAGGTGGTCCAGATCAGCACCAGCATCTTCTACAAGG < 41bp 0.530151499089435 0.737795335491766 NA NA prediction 0.415287672804662 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133543672 chr9:133543671 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_30715 0 0 0 0 1 PRDM12 chr9:133543700 5'GT 133543700 Upstream 30bp 28121 chr22 24038805 24038805 1 + G A HNSC 24038806 + 24038786 24038826 41 GCTGACACCTGGCAGGCGGGGAGCTTTAAGGTGGCCACCCA GCTGACACCTGGCAGGCGGAGAGCTTTAAGGTGGCCACCCA < 41bp 0.508947548012034 0.716590695359305 NA NA prediction 0.415286294694543 Functional Gain - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24038806 chr22:24038805 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_30716 0 0 0 0 2 RGL4 chr22:24038801 3'AG 24038801 Downstream 5bp 28122 chr22 24038805 24038805 1 + G A HNSC 24038806 + 24038786 24038826 41 GCTGACACCTGGCAGGCGGGGAGCTTTAAGGTGGCCACCCA GCTGACACCTGGCAGGCGGAGAGCTTTAAGGTGGCCACCCA < 41bp 0.508947548012034 0.716590695359305 NA NA prediction 0.415286294694543 Functional Gain - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24038806 chr22:24038805 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_30716 0 0 0 0 2 RGL4 chr22:24038875 5'GT 24038875 Upstream 71bp 28123 chr16 29847055 29847055 1 + C T STAD 29847056 + 29847036 29847076 41 CTGGTCACCACAGTAGGGGCGTACCTCCCAGCGGTGTTTGA CTGGTCACCACAGTAGGGGTGTACCTCCCAGCGGTGTTTGA < 41bp 0.500230623525736 0.707872159187653 NA NA prediction 0.415283071323834 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29847056 chr16:29847055 nonsynonymous SNV 0.427 3 20 hm7G_associated_SNPs_30717 0 0 0 0 2 MVP chr16:29847025 3'AG 29847025 Downstream 31bp 28124 chr16 29847055 29847055 1 + C T STAD 29847056 + 29847036 29847076 41 CTGGTCACCACAGTAGGGGCGTACCTCCCAGCGGTGTTTGA CTGGTCACCACAGTAGGGGTGTACCTCCCAGCGGTGTTTGA < 41bp 0.500230623525736 0.707872159187653 NA NA prediction 0.415283071323834 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29847056 chr16:29847055 nonsynonymous SNV 0.427 3 20 hm7G_associated_SNPs_30717 0 0 0 0 2 MVP chr16:29847119 5'GT 29847119 Upstream 65bp 28125 chr4 6612678 6612678 1 + G A rs147196628 6612679 + 6612659 6612699 41 TTGTGTTGCTGTCGGAGCGGGCACATGGCATCTCCAGCCAA TTGTGTTGCTGTCGGAGCGAGCACATGGCATCTCCAGCCAA < 41bp 0.514447780526698 0.72208919624857 NA NA prediction 0.415282831443743 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6612679 chr4:6612678 synonymous SNV . 0 20 hm7G_associated_SNPs_30718 0 0 0 0 2 MAN2B2 chr4:6612607 3'AG 6612607 Downstream 72bp 28126 chr4 6612678 6612678 1 + G A rs147196628 6612679 + 6612659 6612699 41 TTGTGTTGCTGTCGGAGCGGGCACATGGCATCTCCAGCCAA TTGTGTTGCTGTCGGAGCGAGCACATGGCATCTCCAGCCAA < 41bp 0.514447780526698 0.72208919624857 NA NA prediction 0.415282831443743 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6612679 chr4:6612678 synonymous SNV . 0 20 hm7G_associated_SNPs_30718 0 0 0 0 2 MAN2B2 chr4:6612717 5'GT 6612717 Upstream 40bp 28127 chr12 122622049 122622049 1 + C T SKCM 122622050 + 122622030 122622070 41 AACTCAGGGCAGGCCTCTCCGTGTGCATCGGAGCAGAGCCC AACTCAGGGCAGGCCTCTCTGTGTGCATCGGAGCAGAGCCC < 41bp 0.49843728659427 0.707640498442691 NA NA prediction 0.415280996885382 Functional Gain - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122622050 chr12:122622049 nonsynonymous SNV 0.603 4 20 hm7G_associated_SNPs_30719 0 0 1 0 2 MLXIP chr12:122622016 3'AG 122622016 Downstream 34bp 28128 chr12 122622049 122622049 1 + C T SKCM 122622050 + 122622030 122622070 41 AACTCAGGGCAGGCCTCTCCGTGTGCATCGGAGCAGAGCCC AACTCAGGGCAGGCCTCTCTGTGTGCATCGGAGCAGAGCCC < 41bp 0.49843728659427 0.707640498442691 NA NA prediction 0.415280996885382 Functional Gain - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122622050 chr12:122622049 nonsynonymous SNV 0.603 4 20 hm7G_associated_SNPs_30719 0 0 1 0 2 MLXIP chr12:122622137 5'GT 122622137 Upstream 89bp 28129 chr11 65988645 65988645 1 + C T SKCM 65988646 + 65988626 65988666 41 CCTTTCTTTGAGGGGATGTCGCAGTCCAGCTCCCAGACGGA CCTTTCTTTGAGGGGATGTTGCAGTCCAGCTCCCAGACGGA < 41bp 0.545458162618167 0.753097724806515 NA NA prediction 0.415279124376696 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:65988646 chr11:65988645 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30720 0 0 1 0 2 PACS1 chr11:65988625 3'AG 65988625 Downstream 21bp 28130 chr11 65988645 65988645 1 + C T SKCM 65988646 + 65988626 65988666 41 CCTTTCTTTGAGGGGATGTCGCAGTCCAGCTCCCAGACGGA CCTTTCTTTGAGGGGATGTTGCAGTCCAGCTCCCAGACGGA < 41bp 0.545458162618167 0.753097724806515 NA NA prediction 0.415279124376696 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:65988646 chr11:65988645 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_30720 0 0 1 0 2 PACS1 chr11:65988718 5'GT 65988718 Upstream 74bp 28131 chr7 141755509 141755509 1 + C T SKCM 141755510 + 141755490 141755530 41 CACTTGGGGGATGTTCTCCCGAGACCAGCCCCCAGGGGTAA CACTTGGGGGATGTTCTCCTGAGACCAGCCCCCAGGGGTAA < 41bp 0.515221841791651 0.722861298492656 NA NA prediction 0.415278913402009 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141755510 chr7:141755509 stopgain 0.957 0 20 hm7G_associated_SNPs_30721 0 0 0 0 1 MGAM chr7:141755526 5'GT 141755526 Upstream 18bp 28132 chr16 66997277 66997277 1 + C T COAD 66997278 + 66997258 66997298 41 GTGCGGGATGCCAGCACTGCGCCCCCAATGTGAGTAGTGCT GTGCGGGATGCCAGCACTGTGCCCCCAATGTGAGTAGTGCT < 41bp 0.501044509742707 0.708683638284412 NA NA prediction 0.415278257083409 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997278 chr16:66997277 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_30722 0 0 1 0 1 CES3 chr16:66997286 5'GT 66997286 Upstream 10bp 28133 chr6 36179130 36179130 1 + C T UCEC 36179131 + 36179111 36179151 41 GGACCTGGTGAGCGCCATGCGGTCCAGTGGGGCCCGCACCC GGACCTGGTGAGCGCCATGTGGTCCAGTGGGGCCCGCACCC < 41bp 0.508792317505561 0.716425589098619 NA NA prediction 0.415266543186117 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36179131 chr6:36179130 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_30724 0 0 1 0 1 BRPF3 chr6:36179035 3'AG 36179035 Downstream 96bp 28134 chr20 43564092 43564092 1 + C T COAD 43564093 + 43564073 43564113 41 TGCTGTACACCAGGCCGGCCGCTCCTGCCGTGCAAATGTTC TGCTGTACACCAGGCCGGCTGCTCCTGCCGTGCAAATGTTC < 41bp 0.511366211035344 0.718996563789789 NA NA prediction 0.41526070550889 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43564093 chr20:43564092 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_30727 0 0 1 0 2 PABPC1L chr20:43564032 3'AG 43564032 Downstream 61bp 28135 chr20 43564092 43564092 1 + C T COAD 43564093 + 43564073 43564113 41 TGCTGTACACCAGGCCGGCCGCTCCTGCCGTGCAAATGTTC TGCTGTACACCAGGCCGGCTGCTCCTGCCGTGCAAATGTTC < 41bp 0.511366211035344 0.718996563789789 NA NA prediction 0.41526070550889 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43564093 chr20:43564092 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_30727 0 0 1 0 2 PABPC1L chr20:43564138 5'GT 43564138 Upstream 47bp 28136 chr6 36993615 36993615 1 + C T rs79120653 36993616 + 36993596 36993636 41 GGGCCGAACTGAAATACGACGACAACAGGCCCAACCGAGTC GGGCCGAACTGAAATACGATGACAACAGGCCCAACCGAGTC < 41bp 0.506849038277449 0.714473957564301 NA NA prediction 0.415249838573704 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36993616 chr6:36993615 synonymous SNV . 0 20 hm7G_associated_SNPs_30730 0 0 0 0 2 FGD2 chr6:36993568 3'AG 36993568 Downstream 48bp 28137 chr6 36993615 36993615 1 + C T rs79120653 36993616 + 36993596 36993636 41 GGGCCGAACTGAAATACGACGACAACAGGCCCAACCGAGTC GGGCCGAACTGAAATACGATGACAACAGGCCCAACCGAGTC < 41bp 0.506849038277449 0.714473957564301 NA NA prediction 0.415249838573704 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36993616 chr6:36993615 synonymous SNV . 0 20 hm7G_associated_SNPs_30730 0 0 0 0 2 FGD2 chr6:36993714 5'GT 36993714 Upstream 100bp 28138 chr22 20078962 20078962 1 + C T UCEC 20078963 + 20078943 20078983 41 GTAAATCTGGGACAGATCTCGAGGAATTTCGAAGCTACCTG GTAAATCTGGGACAGATCTTGAGGAATTTCGAAGCTACCTG < 41bp 0.502074346063355 0.709697177811007 NA NA prediction 0.415245663495302 Functional Gain - DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20078963 chr22:20078962 synonymous SNV . 0 20 hm7G_associated_SNPs_30731 0 0 1 0 1 DGCR8 chr22:20078958 3'AG 20078958 Downstream 5bp 28139 chr11 63986803 63986803 1 + G A MESO 63986804 + 63986784 63986824 41 AGATTGACTGCACCGAGGAGGAGATGATGGTGTTTGCCGCC AGATTGACTGCACCGAGGAAGAGATGATGGTGTTTGCCGCC < 41bp 0.503725917603997 0.711347542189576 NA NA prediction 0.415243249171159 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63986804 chr11:63986803 synonymous SNV . 0 20 hm7G_associated_SNPs_30732 0 0 1 0 2 FERMT3 chr11:63986723 3'AG 63986723 Downstream 81bp 28140 chr11 63986803 63986803 1 + G A MESO 63986804 + 63986784 63986824 41 AGATTGACTGCACCGAGGAGGAGATGATGGTGTTTGCCGCC AGATTGACTGCACCGAGGAAGAGATGATGGTGTTTGCCGCC < 41bp 0.503725917603997 0.711347542189576 NA NA prediction 0.415243249171159 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63986804 chr11:63986803 synonymous SNV . 0 20 hm7G_associated_SNPs_30732 0 0 1 0 2 FERMT3 chr11:63986830 5'GT 63986830 Upstream 28bp 28141 chr3 38537926 38537926 1 + G A BLCA 38537927 + 38537907 38537947 41 CTGAGCGGCTTCGTGGCTGGGGCTGTAGTGGGCGCTGCGGG CTGAGCGGCTTCGTGGCTGAGGCTGTAGTGGGCGCTGCGGG < 41bp 0.510106773472841 0.717724867187423 NA NA prediction 0.415236187429163 Functional Gain - EXOG ENSG00000157036 CDS Human protein_coding chr3:38537927 chr3:38537926 nonsynonymous SNV 0.762 4 20 hm7G_associated_SNPs_30734 0 0 1 0 1 EXOG chr3:38538021 5'GT 38538021 Upstream 96bp 28142 chr16 22269016 22269016 1 + C T rs191224579 22269017 + 22268997 22269037 41 ATGCCTGCAACCGGATTTGCGAGAGCATGGGCCTTGCTCCC ATGCCTGCAACCGGATTTGTGAGAGCATGGGCCTTGCTCCC < 41bp 0.530086639978658 0.737704588573638 NA NA prediction 0.41523589718996 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22269017 chr16:22269016 synonymous SNV . 0 20 hm7G_associated_SNPs_30735 0 0 1 0 2 EEF2K chr16:22268964 3'AG 22268964 Downstream 53bp 28143 chr16 22269016 22269016 1 + C T rs191224579 22269017 + 22268997 22269037 41 ATGCCTGCAACCGGATTTGCGAGAGCATGGGCCTTGCTCCC ATGCCTGCAACCGGATTTGTGAGAGCATGGGCCTTGCTCCC < 41bp 0.530086639978658 0.737704588573638 NA NA prediction 0.41523589718996 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22269017 chr16:22269016 synonymous SNV . 0 20 hm7G_associated_SNPs_30735 0 0 1 0 2 EEF2K chr16:22269091 5'GT 22269091 Upstream 76bp 28144 chr19 56539846 56539846 1 + C T rs149649207 56539847 + 56539827 56539867 41 TCTTCCCAAGAGATGAGTCCGCTGAGGCATGTCCTGTGGTC TCTTCCCAAGAGATGAGTCTGCTGAGGCATGTCCTGTGGTC < 41bp 0.50015256641581 0.707770214690559 NA NA prediction 0.415235296549498 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56539847 chr19:56539846 synonymous SNV . 0 20 hm7G_associated_SNPs_30736 0 0 0 0 1 NLRP5 chr19:56539875 5'GT 56539875 Upstream 30bp 28145 chr12 107126739 107126739 1 + C T COAD 107126740 + 107126720 107126760 41 TCATCTTGACAGAGGCTGCCGCACCAACCCCTTCACCAGTG TCATCTTGACAGAGGCTGCTGCACCAACCCCTTCACCAGTG < 41bp 0.544452762811139 0.75206696809311 NA NA prediction 0.415228410563942 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107126740 chr12:107126739 synonymous SNV . 0 20 hm7G_associated_SNPs_30738 0 0 0 0 1 RFX4 chr12:107126702 3'AG 107126702 Downstream 38bp 28146 chr2 219526222 219526222 1 + G A SKCM 219526223 + 219526203 219526243 41 GGGAATCTGTCACCTTCACGGCCCTGGGCACTGACCGAAAG GGGAATCTGTCACCTTCACAGCCCTGGGCACTGACCGAAAG < 41bp 0.520122675425132 0.727735157425756 NA NA prediction 0.415224964001248 Functional Gain - BCS1L ENSG00000074582 CDS Human protein_coding chr2:219526223 chr2:219526222 synonymous SNV . 0 20 hm7G_associated_SNPs_30740 0 0 1 0 2 BCS1L chr2:219526129 3'AG 219526129 Downstream 94bp 28147 chr2 219526222 219526222 1 + G A SKCM 219526223 + 219526203 219526243 41 GGGAATCTGTCACCTTCACGGCCCTGGGCACTGACCGAAAG GGGAATCTGTCACCTTCACAGCCCTGGGCACTGACCGAAAG < 41bp 0.520122675425132 0.727735157425756 NA NA prediction 0.415224964001248 Functional Gain - BCS1L ENSG00000074582 CDS Human protein_coding chr2:219526223 chr2:219526222 synonymous SNV . 0 20 hm7G_associated_SNPs_30740 0 0 1 0 2 BCS1L chr2:219526268 5'GT 219526268 Upstream 47bp 28148 chr16 67650719 67650719 1 + C T UCEC 67650720 + 67650700 67650740 41 AGAATTGGTTCGGCATCGTCGTTACAAACACACCCACGAGA AGAATTGGTTCGGCATCGTTGTTACAAACACACCCACGAGA < 41bp 0.505349056577618 0.712960374526705 NA NA prediction 0.415222635898175 Functional Gain - CTCF ENSG00000102974 CDS Human protein_coding chr16:67650720 chr16:67650719 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30741 1 0 1 0 2 CTCF chr16:67650648 3'AG 67650648 Downstream 72bp 28149 chr16 67650719 67650719 1 + C T UCEC 67650720 + 67650700 67650740 41 AGAATTGGTTCGGCATCGTCGTTACAAACACACCCACGAGA AGAATTGGTTCGGCATCGTTGTTACAAACACACCCACGAGA < 41bp 0.505349056577618 0.712960374526705 NA NA prediction 0.415222635898175 Functional Gain - CTCF ENSG00000102974 CDS Human protein_coding chr16:67650720 chr16:67650719 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30741 1 0 1 0 2 CTCF chr16:67650781 5'GT 67650781 Upstream 63bp 28150 chr4 151160949 151160949 1 + C T ESCA 151160950 + 151160930 151160970 41 CTGGGAGACTTTGGGCTTGCGACTGTGGTAGAAGGCCCTTT CTGGGAGACTTTGGGCTTGTGACTGTGGTAGAAGGCCCTTT < 41bp 0.49834002941112 0.70760849619542 NA NA prediction 0.41521699239084 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151160950 chr4:151160949 nonsynonymous SNV 0.674 4 20 hm7G_associated_SNPs_30744 0 0 1 1 2 DCLK2 chr4:151160894 3'AG 151160894 Downstream 56bp 28151 chr4 151160949 151160949 1 + C T ESCA 151160950 + 151160930 151160970 41 CTGGGAGACTTTGGGCTTGCGACTGTGGTAGAAGGCCCTTT CTGGGAGACTTTGGGCTTGTGACTGTGGTAGAAGGCCCTTT < 41bp 0.49834002941112 0.70760849619542 NA NA prediction 0.41521699239084 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151160950 chr4:151160949 nonsynonymous SNV 0.674 4 20 hm7G_associated_SNPs_30744 0 0 1 1 2 DCLK2 chr4:151161027 5'GT 151161027 Upstream 79bp 28152 chr17 43323080 43323080 1 + C T CESC 43323081 + 43323061 43323101 41 GTTCTTCTCCCTCTTTAGCCGCTTCATTAAGGCCTACAAGG GTTCTTCTCCCTCTTTAGCTGCTTCATTAAGGCCTACAAGG < 41bp 0.519575376832511 0.727183569427272 NA NA prediction 0.415216385189523 Functional Gain - FMNL1 ENSG00000184922 CDS Human antisense chr17:43323081 chr17:43323080 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_30745 0 0 1 0 3 FMNL1 chr17:43322986 3'AG 43322986 Downstream 95bp 28153 chr17 43323080 43323080 1 + C T CESC 43323081 + 43323061 43323101 41 GTTCTTCTCCCTCTTTAGCCGCTTCATTAAGGCCTACAAGG GTTCTTCTCCCTCTTTAGCTGCTTCATTAAGGCCTACAAGG < 41bp 0.519575376832511 0.727183569427272 NA NA prediction 0.415216385189523 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323081 chr17:43323080 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_30745 0 0 1 0 3 FMNL1 chr17:43322999 3'AG 43322999 Downstream 82bp 28154 chr17 43323080 43323080 1 + C T CESC 43323081 + 43323061 43323101 41 GTTCTTCTCCCTCTTTAGCCGCTTCATTAAGGCCTACAAGG GTTCTTCTCCCTCTTTAGCTGCTTCATTAAGGCCTACAAGG < 41bp 0.519575376832511 0.727183569427272 NA NA prediction 0.415216385189523 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323081 chr17:43323080 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_30745 0 0 1 0 3 FMNL1 chr17:43323100 5'GT 43323100 Upstream 21bp 28155 chr16 30982706 30982706 1 + C T LUSC 30982707 + 30982687 30982727 41 CTGGATTTCCAGGCGAGGACGAGGAAAGCGATTCGTCTTCC CTGGATTTCCAGGCGAGGATGAGGAAAGCGATTCGTCTTCC < 41bp 0.524106483580279 0.731713513331242 NA NA prediction 0.415214059501926 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30982707 chr16:30982706 synonymous SNV . 0 20 hm7G_associated_SNPs_30746 0 0 1 0 1 SETD1A chr16:30982699 3'AG 30982699 Downstream 8bp 28156 chr15 51689763 51689763 1 + G A rs143383924 51689764 + 51689744 51689784 41 AGAAGAGCCAAAGGCCCTCGGCAGCCAAGCATGTTCAACGG AGAAGAGCCAAAGGCCCTCAGCAGCCAAGCATGTTCAACGG < 41bp 0.553753106787276 0.761359077757126 NA NA prediction 0.415211941939699 Functional Gain - GLDN ENSG00000186417 CDS Human protein_coding chr15:51689764 chr15:51689763 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30747 0 0 0 0 2 GLDN chr15:51689667 3'AG 51689667 Downstream 97bp 28157 chr15 51689763 51689763 1 + G A rs143383924 51689764 + 51689744 51689784 41 AGAAGAGCCAAAGGCCCTCGGCAGCCAAGCATGTTCAACGG AGAAGAGCCAAAGGCCCTCAGCAGCCAAGCATGTTCAACGG < 41bp 0.553753106787276 0.761359077757126 NA NA prediction 0.415211941939699 Functional Gain - GLDN ENSG00000186417 CDS Human protein_coding chr15:51689764 chr15:51689763 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30747 0 0 0 0 2 GLDN chr15:51689795 5'GT 51689795 Upstream 33bp 28158 chrX 69595076 69595076 1 + C T KICH 69595077 + 69595057 69595097 41 GAGTGAGCGCCGCCGCAAACGTCTCCAGGAGCTGGAGGGTC GAGTGAGCGCCGCCGCAAATGTCTCCAGGAGCTGGAGGGTC < 41bp 0.505631844305263 0.713231760325303 NA NA prediction 0.415199832040081 Functional Gain - KIF4A ENSG00000090889 CDS Human protein_coding chrX:69595077 chrX:69595076 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_30748 0 0 0 0 1 KIF4A chrX:69595054 3'AG 69595054 Downstream 23bp 28159 chr17 7749463 7749463 1 + C T SKCM 7749464 + 7749444 7749484 41 CTGTGTGCAGGCATTGCTCCGGGAGCCAGCCCAGCCAGGGC CTGTGTGCAGGCATTGCTCTGGGAGCCAGCCCAGCCAGGGC < 41bp 0.502419661799934 0.710018342073891 NA NA prediction 0.415197360547913 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7749464 chr17:7749463 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30749 0 0 1 0 1 KDM6B chr17:7749396 3'AG 7749396 Downstream 68bp 28160 chr2 113955413 113955413 1 + C T ESCA 113955414 + 113955394 113955434 41 ACCACTCGCTGGCCACCCCCGCCACGCATTACACCAAGAAG ACCACTCGCTGGCCACCCCTGCCACGCATTACACCAAGAAG < 41bp 0.507324555876478 0.714919433292344 NA NA prediction 0.415189754831733 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955414 chr2:113955413 synonymous SNV . 0 20 hm7G_associated_SNPs_30753 0 0 0 0 3 PSD4 chr2:113955324 3'AG 113955324 Downstream 90bp 28161 chr2 113955413 113955413 1 + C T ESCA 113955414 + 113955394 113955434 41 ACCACTCGCTGGCCACCCCCGCCACGCATTACACCAAGAAG ACCACTCGCTGGCCACCCCTGCCACGCATTACACCAAGAAG < 41bp 0.507324555876478 0.714919433292344 NA NA prediction 0.415189754831733 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955414 chr2:113955413 synonymous SNV . 0 20 hm7G_associated_SNPs_30753 0 0 0 0 3 PSD4 chr2:113955327 3'AG 113955327 Downstream 87bp 28162 chr2 113955413 113955413 1 + C T ESCA 113955414 + 113955394 113955434 41 ACCACTCGCTGGCCACCCCCGCCACGCATTACACCAAGAAG ACCACTCGCTGGCCACCCCTGCCACGCATTACACCAAGAAG < 41bp 0.507324555876478 0.714919433292344 NA NA prediction 0.415189754831733 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955414 chr2:113955413 synonymous SNV . 0 20 hm7G_associated_SNPs_30753 0 0 0 0 3 PSD4 chr2:113955490 5'GT 113955490 Upstream 78bp 28163 chr3 38438638 38438638 1 + C T rs79233786 38438639 + 38438619 38438659 41 CTGTGTGGGTTCTGCATACCGAGCTTTTCATGGTAGGTTGA CTGTGTGGGTTCTGCATACTGAGCTTTTCATGGTAGGTTGA < 41bp 0.516718512435924 0.724312599642668 NA NA prediction 0.415188174413487 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38438639 chr3:38438638 stopgain 0.998 0 20 hm7G_associated_SNPs_30754 0 0 1 0 2 XYLB chr3:38438563 3'AG 38438563 Downstream 76bp 28164 chr3 38438638 38438638 1 + C T rs79233786 38438639 + 38438619 38438659 41 CTGTGTGGGTTCTGCATACCGAGCTTTTCATGGTAGGTTGA CTGTGTGGGTTCTGCATACTGAGCTTTTCATGGTAGGTTGA < 41bp 0.516718512435924 0.724312599642668 NA NA prediction 0.415188174413487 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38438639 chr3:38438638 stopgain 0.998 0 20 hm7G_associated_SNPs_30754 0 0 1 0 2 XYLB chr3:38438650 5'GT 38438650 Upstream 13bp 28165 chrX 79279563 79279563 1 + C T LGG 79279564 + 79279544 79279584 41 TTATTTTCTTTCTTACAGGCGGATGTTCCCCTCTGTTCGGG TTATTTTCTTTCTTACAGGTGGATGTTCCCCTCTGTTCGGG < 41bp 0.525305859439505 0.732899642237648 NA NA prediction 0.415187565596285 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79279564 chrX:79279563 nonsynonymous SNV 0.743 5 20 hm7G_associated_SNPs_30755 0 0 0 0 1 TBX22 chrX:79279562 3'AG 79279562 Downstream 2bp 28166 chr8 24187575 24187575 1 + C T LGG 24187576 + 24187556 24187596 41 ACTTTGGAATGTTTCATGACGACTATTCTTGCAAGTGTCCT ACTTTGGAATGTTTCATGATGACTATTCTTGCAAGTGTCCT < 41bp 0.500061651753254 0.707652566919182 NA NA prediction 0.415181830331855 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24187576 chr8:24187575 synonymous SNV . 0 20 hm7G_associated_SNPs_30756 0 0 0 0 2 ADAM28 chr8:24187498 3'AG 24187498 Downstream 78bp 28167 chr8 24187575 24187575 1 + C T LGG 24187576 + 24187556 24187596 41 ACTTTGGAATGTTTCATGACGACTATTCTTGCAAGTGTCCT ACTTTGGAATGTTTCATGATGACTATTCTTGCAAGTGTCCT < 41bp 0.500061651753254 0.707652566919182 NA NA prediction 0.415181830331855 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24187576 chr8:24187575 synonymous SNV . 0 20 hm7G_associated_SNPs_30756 0 0 0 0 2 ADAM28 chr8:24187628 5'GT 24187628 Upstream 54bp 28168 chrX 7252076 7252076 1 + C T STAD 7252077 + 7252057 7252097 41 GCTTGAAGGAAAAAGCCAACGCTCCGATCATGAGTTTCTCT GCTTGAAGGAAAAAGCCAATGCTCCGATCATGAGTTTCTCT < 41bp 0.504523892846584 0.71211431319508 NA NA prediction 0.415180840696992 Functional Gain - STS ENSG00000101846 CDS Human protein_coding chrX:7252077 chrX:7252076 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30757 0 0 0 0 2 STS chrX:7252027 3'AG 7252027 Downstream 50bp 28169 chrX 7252076 7252076 1 + C T STAD 7252077 + 7252057 7252097 41 GCTTGAAGGAAAAAGCCAACGCTCCGATCATGAGTTTCTCT GCTTGAAGGAAAAAGCCAATGCTCCGATCATGAGTTTCTCT < 41bp 0.504523892846584 0.71211431319508 NA NA prediction 0.415180840696992 Functional Gain - STS ENSG00000101846 CDS Human protein_coding chrX:7252077 chrX:7252076 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30757 0 0 0 0 2 STS chrX:7252148 5'GT 7252148 Upstream 73bp 28170 chr5 1216926 1216926 1 + G A SKCM 1216927 + 1216907 1216947 41 CATCCTGACCCTCATCAACGGGTTCGACCTGCCTGAAGGCA CATCCTGACCCTCATCAACAGGTTCGACCTGCCTGAAGGCA < 41bp 0.557403176663592 0.764993261216096 NA NA prediction 0.415180169105009 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1216927 chr5:1216926 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_30758 0 0 0 0 1 SLC6A19 chr5:1216904 3'AG 1216904 Downstream 23bp 28171 chr13 45723916 45723916 1 + G T UCEC 45723917 + 45723897 45723937 41 TCCTTTAGGACTCAAGGAAGGACTGAGGTAAGATTATTTAT TCCTTTAGGACTCAAGGAATGACTGAGGTAAGATTATTTAT < 41bp 0.668044622574502 0.875632071685101 NA NA prediction 0.415174898221196 Functional Gain - GTF2F2 ENSG00000188342 CDS Human protein_coding chr13:45723917 chr13:45723916 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30759 0 0 1 0 2 GTF2F2 chr13:45723905 3'AG 45723905 Downstream 12bp 28172 chr13 45723916 45723916 1 + G T UCEC 45723917 + 45723897 45723937 41 TCCTTTAGGACTCAAGGAAGGACTGAGGTAAGATTATTTAT TCCTTTAGGACTCAAGGAATGACTGAGGTAAGATTATTTAT < 41bp 0.668044622574502 0.875632071685101 NA NA prediction 0.415174898221196 Functional Gain - GTF2F2 ENSG00000188342 CDS Human protein_coding chr13:45723917 chr13:45723916 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30759 0 0 1 0 2 GTF2F2 chr13:45723923 5'GT 45723923 Upstream 8bp 28173 chr10 116014686 116014686 1 + C T PRAD 116014687 + 116014667 116014707 41 TCCCTAGTGATGTGGTGCTCGGCTGCAGTGGACATCATGTT TCCCTAGTGATGTGGTGCTTGGCTGCAGTGGACATCATGTT < 41bp 0.521139180526666 0.728726030704039 NA NA prediction 0.415173700354747 Functional Gain - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116014687 chr10:116014686 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_30760 0 0 0 0 1 VWA2 chr10:116014674 3'AG 116014674 Downstream 13bp 28174 chr3 97618093 97618093 1 + C T UCEC 97618094 + 97618074 97618114 41 TAATATAATCATGTCGATACGGCCAATCCAACTGGTGAGTG TAATATAATCATGTCGATATGGCCAATCCAACTGGTGAGTG < 41bp 0.50081826680045 0.708404485171369 NA NA prediction 0.415172436741838 Functional Gain - CRYBG3 ENSG00000080200 CDS Human protein_coding chr3:97618094 chr3:97618093 nonsynonymous SNV 0.876 3 20 hm7G_associated_SNPs_30761 0 0 0 0 1 CRYBG3 chr3:97618107 5'GT 97618107 Upstream 15bp 28175 chr17 7253484 7253484 1 + G A SARC 7253485 + 7253465 7253505 41 AAACGGGGAGCTGATCTGGGGGCTCGAGACTCTGAAGGCAG AAACGGGGAGCTGATCTGGAGGCTCGAGACTCTGAAGGCAG < 41bp 0.545543803855987 0.753124236947499 NA NA prediction 0.415160866183025 Functional Gain - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7253485 chr17:7253484 nonsynonymous SNV 0.966 0 20 hm7G_associated_SNPs_30762 0 0 0 0 2 ACAP1 chr17:7253446 3'AG 7253446 Downstream 39bp 28176 chr17 7253484 7253484 1 + G A SARC 7253485 + 7253465 7253505 41 AAACGGGGAGCTGATCTGGGGGCTCGAGACTCTGAAGGCAG AAACGGGGAGCTGATCTGGAGGCTCGAGACTCTGAAGGCAG < 41bp 0.545543803855987 0.753124236947499 NA NA prediction 0.415160866183025 Functional Gain - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7253485 chr17:7253484 nonsynonymous SNV 0.966 0 20 hm7G_associated_SNPs_30762 0 0 0 0 2 ACAP1 chr17:7253556 5'GT 7253556 Upstream 73bp 28177 chr20 2840773 2840773 1 + C T rs3818605 2840774 + 2840754 2840794 41 TCGATATATACTCTGCTTCCGGCATGCCTCTGGCCAGCCTG TCGATATATACTCTGCTTCTGGCATGCCTCTGGCCAGCCTG < 41bp 0.539517071522988 0.747094770651945 NA NA prediction 0.415155398257913 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840774 chr20:2840773 synonymous SNV . 0 20 hm7G_associated_SNPs_30764 0 0 1 0 2 VPS16 chr20:2840700 3'AG 2840700 Downstream 74bp 28178 chr20 2840773 2840773 1 + C T rs3818605 2840774 + 2840754 2840794 41 TCGATATATACTCTGCTTCCGGCATGCCTCTGGCCAGCCTG TCGATATATACTCTGCTTCTGGCATGCCTCTGGCCAGCCTG < 41bp 0.539517071522988 0.747094770651945 NA NA prediction 0.415155398257913 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2840774 chr20:2840773 synonymous SNV . 0 20 hm7G_associated_SNPs_30764 0 0 1 0 2 VPS16 chr20:2840797 5'GT 2840797 Upstream 25bp 28179 chr22 37696974 37696974 1 + C T LGG 37696975 + 37696955 37696995 41 CTGTGGAGCTTCCGGCTGCCGGGCGAGGCCCAGAAGATAGA CTGTGGAGCTTCCGGCTGCTGGGCGAGGCCCAGAAGATAGA < 41bp 0.532773656587876 0.740350906406743 NA NA prediction 0.415154499637734 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37696975 chr22:37696974 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_30765 0 0 0 0 2 CYTH4 chr22:37696948 3'AG 37696948 Downstream 27bp 28180 chr22 37696974 37696974 1 + C T LGG 37696975 + 37696955 37696995 41 CTGTGGAGCTTCCGGCTGCCGGGCGAGGCCCAGAAGATAGA CTGTGGAGCTTCCGGCTGCTGGGCGAGGCCCAGAAGATAGA < 41bp 0.532773656587876 0.740350906406743 NA NA prediction 0.415154499637734 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37696975 chr22:37696974 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_30765 0 0 0 0 2 CYTH4 chr22:37697060 5'GT 37697060 Upstream 87bp 28181 chr1 17559380 17559380 1 + G A UCEC 17559381 + 17559361 17559401 41 CTCCAGCCTTGACTCCTTCGGCAACCTGGACGTCAGCCCGC CTCCAGCCTTGACTCCTTCAGCAACCTGGACGTCAGCCCGC < 41bp 0.566105619291915 0.773680490197054 NA NA prediction 0.415149741810279 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17559381 chr1:17559380 nonsynonymous SNV 0.768 4 20 hm7G_associated_SNPs_30766 0 0 0 0 1 PADI1 chr1:17559465 5'GT 17559465 Upstream 86bp 28182 chr22 32480588 32480588 1 + G T UCS 32480589 + 32480569 32480609 41 CTCACGGGAGACCTCCCATGGCCTGGGTTCATCTTTGGGAT CTCACGGGAGACCTCCCATTGCCTGGGTTCATCTTTGGGAT < 41bp 0.353051683186085 0.707571942372038 NA NA prediction 0.415143884744076 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32480589 chr22:32480588 nonsynonymous SNV 0.331 3 20 hm7G_associated_SNPs_30767 0 0 0 0 1 SLC5A1 chr22:32480646 5'GT 32480646 Upstream 59bp 28183 chr9 107535184 107535184 1 + C T UCEC 107535185 + 107535165 107535205 41 GAGGATCCCAGAGTTGTGGCGGCTGGTAAGCTGTTTCACTA GAGGATCCCAGAGTTGTGGTGGCTGGTAAGCTGTTTCACTA < 41bp 0.505093843929372 0.712665547627671 NA NA prediction 0.415143407396598 Functional Gain - NIPSNAP3B ENSG00000165028 CDS Human protein_coding chr9:107535185 chr9:107535184 nonsynonymous SNV 0.746 3 20 hm7G_associated_SNPs_30768 0 0 0 0 1 NIPSNAP3B chr9:107535103 3'AG 107535103 Downstream 82bp 28184 chr10 18242422 18242422 1 + G T LUSC 18242423 + 18242403 18242443 41 AACATTGTTGGAGAAAACTGGGTGCCCACGGAGGAGAAACG AACATTGTTGGAGAAAACTTGGTGCCCACGGAGGAGAAACG < 41bp 0.69925924128014 0.90683093017105 NA NA prediction 0.415143377781821 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18242423 chr10:18242422 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_30769 0 0 0 0 1 SLC39A12 chr10:18242466 5'GT 18242466 Upstream 45bp 28185 chr8 27277442 27277442 1 + C T UCEC 27277443 + 27277423 27277463 41 CTCCATCCTGCTGAGCGGGCGGATCGGGCCCAACATCCGGT CTCCATCCTGCTGAGCGGGTGGATCGGGCCCAACATCCGGT < 41bp 0.533192904460595 0.740758828889734 NA NA prediction 0.415131848858279 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27277443 chr8:27277442 nonsynonymous SNV 0.197 3 20 hm7G_associated_SNPs_30770 0 0 1 0 1 PTK2B chr8:27277412 3'AG 27277412 Downstream 31bp 28186 chr2 99182508 99182508 1 + C T HNSC 99182509 + 99182489 99182529 41 CAGCGACGGGTTTAACGTGCGGGTCCCTCTGCCGGGCCCGC CAGCGACGGGTTTAACGTGTGGGTCCCTCTGCCGGGCCCGC < 41bp 0.496505355178232 0.707564202645628 NA NA prediction 0.415128405291256 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99182509 chr2:99182508 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_30774 0 0 1 0 1 INPP4A chr2:99182492 3'AG 99182492 Downstream 17bp 28187 chr16 56906652 56906652 1 + C T STAD 56906653 + 56906633 56906673 41 TTCTCCATCTTCTTCCCCTCGGCCACAGGCATCCTGGCAGG TTCTCCATCTTCTTCCCCTTGGCCACAGGCATCCTGGCAGG < 41bp 0.507299279995086 0.714863336290924 NA NA prediction 0.415128112591677 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56906653 chr16:56906652 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_30775 0 0 0 0 2 SLC12A3 chr16:56906568 3'AG 56906568 Downstream 85bp 28188 chr16 56906652 56906652 1 + C T STAD 56906653 + 56906633 56906673 41 TTCTCCATCTTCTTCCCCTCGGCCACAGGCATCCTGGCAGG TTCTCCATCTTCTTCCCCTTGGCCACAGGCATCCTGGCAGG < 41bp 0.507299279995086 0.714863336290924 NA NA prediction 0.415128112591677 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56906653 chr16:56906652 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_30775 0 0 0 0 2 SLC12A3 chr16:56906698 5'GT 56906698 Upstream 47bp 28189 chr12 283825 283825 1 + G A SKCM 283826 + 283806 283846 41 CGGGCTGGGGGCCGAGAGGGGAGCGCCGGTGCCGCCGCCAG CGGGCTGGGGGCCGAGAGGAGAGCGCCGGTGCCGCCGCCAG < 41bp 0.501674493056034 0.709236020588183 NA NA prediction 0.415123055064299 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:283826 chr12:283825 nonsynonymous SNV 0.952 1 20 hm7G_associated_SNPs_30776 0 0 0 0 1 IQSEC3 chr12:283765 3'AG 283765 Downstream 61bp 28190 chr5 176295849 176295849 1 + G A GBM 176295850 + 176295830 176295870 41 CCCAATGTATACATCACGCGGGAGCACAGCCTGGTGGTGCG CCCAATGTATACATCACGCAGGAGCACAGCCTGGTGGTGCG < 41bp 0.571353789612219 0.778914210351263 NA NA prediction 0.415120841478087 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295850 chr5:176295849 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_30777 0 0 0 0 1 UNC5A chr5:176295785 3'AG 176295785 Downstream 65bp 28191 chr15 91496509 91496509 1 + G A UCEC 91496510 + 91496490 91496530 41 GCCATGCTTACCTCCATGCGGCCCACGCTCTGCAGCCGCAT GCCATGCTTACCTCCATGCAGCCCACGCTCTGCAGCCGCAT < 41bp 0.568737565621433 0.776297129811655 NA NA prediction 0.415119128380445 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91496510 chr15:91496509 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_30778 0 0 1 0 1 UNC45A chr15:91496540 5'GT 91496540 Upstream 32bp 28192 chr17 37864606 37864606 1 + C T SKCM 37864607 + 37864587 37864627 41 TGCAGGGCTACGTGCTCATCGCTCACAACCAAGTGAGGCAG TGCAGGGCTACGTGCTCATTGCTCACAACCAAGTGAGGCAG < 41bp 0.502899788841378 0.710456938816781 NA NA prediction 0.415114299950808 Functional Gain - ERBB2 ENSG00000141736 CDS Human protein_coding chr17:37864607 chr17:37864606 synonymous SNV . 0 20 hm7G_associated_SNPs_30779 0 0 1 0 1 ERBB2 chr17:37864574 3'AG 37864574 Downstream 33bp 28193 chr3 50224092 50224092 1 + C T COAD 50224093 + 50224073 50224113 41 AGTATGGCGTGGCCGGCAGCGCAGCCTTCCTTGAGTGCCAG AGTATGGCGTGGCCGGCAGTGCAGCCTTCCTTGAGTGCCAG < 41bp 0.526570349001899 0.734127176029161 NA NA prediction 0.415113654054523 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50224093 chr3:50224092 synonymous SNV . 0 20 hm7G_associated_SNPs_30780 0 0 0 0 2 SEMA3F chr3:50224046 3'AG 50224046 Downstream 47bp 28194 chr3 50224092 50224092 1 + C T COAD 50224093 + 50224073 50224113 41 AGTATGGCGTGGCCGGCAGCGCAGCCTTCCTTGAGTGCCAG AGTATGGCGTGGCCGGCAGTGCAGCCTTCCTTGAGTGCCAG < 41bp 0.526570349001899 0.734127176029161 NA NA prediction 0.415113654054523 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50224093 chr3:50224092 synonymous SNV . 0 20 hm7G_associated_SNPs_30780 0 0 0 0 2 SEMA3F chr3:50224179 5'GT 50224179 Upstream 88bp 28195 chr19 36166813 36166813 1 + G A rs35399814 36166814 + 36166794 36166834 41 CCTTCCGGGCGGCCACTCCGGAGGTGGTGTTCCCCTGGCCC CCTTCCGGGCGGCCACTCCAGAGGTGGTGTTCCCCTGGCCC < 41bp 0.538090718891881 0.745637979123934 NA NA prediction 0.415094520464106 Functional Gain - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36166814 chr19:36166813 synonymous SNV . 0 20 hm7G_associated_SNPs_30783 0 0 0 0 1 UPK1A chr19:36166742 3'AG 36166742 Downstream 72bp 28196 chr8 1581022 1581022 1 + C T COAD 1581023 + 1581003 1581043 41 CGGAGATCAATGGGCAATTCGAGTCCGTGTGCGAGTCCGTC CGGAGATCAATGGGCAATTTGAGTCCGTGTGCGAGTCCGTC < 41bp 0.516744800839317 0.724288319873377 NA NA prediction 0.41508703806812 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1581023 chr8:1581022 synonymous SNV . 0 20 hm7G_associated_SNPs_30785 0 0 0 0 1 DLGAP2 chr8:1580993 3'AG 1580993 Downstream 30bp 28197 chr17 76167065 76167065 1 + C T UCEC 76167066 + 76167046 76167086 41 CCTTCTTCTTGGTGGTCGACGCGTATTTCCCCCAGATCAGC CCTTCTTCTTGGTGGTCGATGCGTATTTCCCCCAGATCAGC < 41bp 0.498589133447368 0.70754203753871 NA NA prediction 0.415084075077419 Functional Gain - SYNGR2 ENSG00000108639 CDS Human protein_coding chr17:76167066 chr17:76167065 synonymous SNV . 0 20 hm7G_associated_SNPs_30786 0 0 1 0 1 SYNGR2 chr17:76167135 5'GT 76167135 Upstream 71bp 28198 chr12 113379461 113379461 1 + G A SKCM 113379462 + 113379442 113379482 41 ACTGCTTCAAGAGCTATGTGGACCAGAGGGCCCGCCGTGCA ACTGCTTCAAGAGCTATGTAGACCAGAGGGCCCGCCGTGCA < 41bp 0.522057036125056 0.729597423068371 NA NA prediction 0.415080773886629 Functional Gain - OAS3 ENSG00000111331 CDS Human protein_coding chr12:113379462 chr12:113379461 synonymous SNV . 0 20 hm7G_associated_SNPs_30787 0 0 0 0 1 OAS3 chr12:113379375 3'AG 113379375 Downstream 87bp 28199 chr1 155015844 155015844 1 + G A rs117104176 155015845 + 155015825 155015865 41 CAGGAAGAGAAGCAGGCTGGGGTGCTGGGGCTCAACACAAG CAGGAAGAGAAGCAGGCTGAGGTGCTGGGGCTCAACACAAG < 41bp 0.578379997649965 0.785920151633666 NA NA prediction 0.415080307967402 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155015845 chr1:155015844 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_30788 0 0 0 0 1 DCST1 chr1:155015828 3'AG 155015828 Downstream 17bp 28200 chr20 39974573 39974573 1 + C T rs138855546 39974574 + 39974554 39974594 41 GCAGGTGGACGGCTCGTTCCGGTGCTCACCCTTCCACGTGC GCAGGTGGACGGCTCGTTCTGGTGCTCACCCTTCCACGTGC < 41bp 0.527448031484959 0.734984946496559 NA NA prediction 0.415073830023199 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39974574 chr20:39974573 nonsynonymous SNV 0.013 2 20 hm7G_associated_SNPs_30790 0 0 0 0 1 LPIN3 chr20:39974635 5'GT 39974635 Upstream 63bp 28201 chr17 40835917 40835917 1 + C T BRCA 40835918 + 40835898 40835938 41 TACTACAGTCTCCTTACTGCGCCGAGATTCGCCAGGCTGCA TACTACAGTCTCCTTACTGTGCCGAGATTCGCCAGGCTGCA < 41bp 0.518033127906235 0.725567334495222 NA NA prediction 0.415068413177975 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40835918 chr17:40835917 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_30791 0 0 1 0 2 CNTNAP1 chr17:40835839 3'AG 40835839 Downstream 79bp 28202 chr17 40835917 40835917 1 + C T BRCA 40835918 + 40835898 40835938 41 TACTACAGTCTCCTTACTGCGCCGAGATTCGCCAGGCTGCA TACTACAGTCTCCTTACTGTGCCGAGATTCGCCAGGCTGCA < 41bp 0.518033127906235 0.725567334495222 NA NA prediction 0.415068413177975 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40835918 chr17:40835917 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_30791 0 0 1 0 2 CNTNAP1 chr17:40835940 5'GT 40835940 Upstream 24bp 28203 chr21 47412705 47412705 1 + G A rs35059000 47412706 + 47412686 47412726 41 CGGGGGACCCCAGGCACGCGGGGACCAAGAGGAGACCCTGT CGGGGGACCCCAGGCACGCAGGGACCAAGAGGAGACCCTGT < 41bp 0.472256551597097 0.70753262302236 NA NA prediction 0.41506524604472 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47412706 chr21:47412705 nonsynonymous SNV 0.218 4 20 hm7G_associated_SNPs_30792 2 0 1 0 1 COL6A1 chr21:47412724 5'GT 47412724 Upstream 20bp 28204 chr20 57896166 57896166 1 + C T LUSC 57896167 + 57896147 57896187 41 GAATCTGCAGCTCTCACATCGGCCACACTTGCGCTGCGCTT GAATCTGCAGCTCTCACATTGGCCACACTTGCGCTGCGCTT < 41bp 0.514536706203254 0.722068350251703 NA NA prediction 0.415063288096899 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896167 chr20:57896166 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30794 0 0 0 0 2 EDN3 chr20:57896072 3'AG 57896072 Downstream 95bp 28205 chr20 57896166 57896166 1 + C T LUSC 57896167 + 57896147 57896187 41 GAATCTGCAGCTCTCACATCGGCCACACTTGCGCTGCGCTT GAATCTGCAGCTCTCACATTGGCCACACTTGCGCTGCGCTT < 41bp 0.514536706203254 0.722068350251703 NA NA prediction 0.415063288096899 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896167 chr20:57896166 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30794 0 0 0 0 2 EDN3 chr20:57896248 5'GT 57896248 Upstream 83bp 28206 chr9 139847394 139847394 1 + G A PRAD 139847395 + 139847375 139847415 41 CGGGCAACAGCTTCAGGCCGGAGCACAGGGCGCTGCTGAAC CGGGCAACAGCTTCAGGCCAGAGCACAGGGCGCTGCTGAAC < 41bp 0.559080844292976 0.766610972002915 NA NA prediction 0.415060255419878 Functional Gain - LCN12 ENSG00000184925 CDS Human protein_coding chr9:139847395 chr9:139847394 synonymous SNV . 0 20 hm7G_associated_SNPs_30795 0 0 0 0 2 LCN12 chr9:139847344 3'AG 139847344 Downstream 51bp 28207 chr9 139847394 139847394 1 + G A PRAD 139847395 + 139847375 139847415 41 CGGGCAACAGCTTCAGGCCGGAGCACAGGGCGCTGCTGAAC CGGGCAACAGCTTCAGGCCAGAGCACAGGGCGCTGCTGAAC < 41bp 0.559080844292976 0.766610972002915 NA NA prediction 0.415060255419878 Functional Gain - LCN12 ENSG00000184925 CDS Human protein_coding chr9:139847395 chr9:139847394 synonymous SNV . 0 20 hm7G_associated_SNPs_30795 0 0 0 0 2 LCN12 chr9:139847480 5'GT 139847480 Upstream 87bp 28208 chr1 27673962 27673962 1 + G A SKCM 27673963 + 27673943 27673983 41 CAGCTGAAGATCCTGACAGGGGACTGGTTCCAGGAAGCACG CAGCTGAAGATCCTGACAGAGGACTGGTTCCAGGAAGCACG < 41bp 0.482631636146138 0.707529747439586 NA NA prediction 0.415059494879171 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27673963 chr1:27673962 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30796 0 0 0 0 2 SYTL1 chr1:27673912 3'AG 27673912 Downstream 51bp 28209 chr1 27673962 27673962 1 + G A SKCM 27673963 + 27673943 27673983 41 CAGCTGAAGATCCTGACAGGGGACTGGTTCCAGGAAGCACG CAGCTGAAGATCCTGACAGAGGACTGGTTCCAGGAAGCACG < 41bp 0.482631636146138 0.707529747439586 NA NA prediction 0.415059494879171 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27673963 chr1:27673962 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30796 0 0 0 0 2 SYTL1 chr1:27674060 5'GT 27674060 Upstream 99bp 28210 chr6 401710 401710 1 + C T rs570473541 401711 + 401691 401731 41 GGCCCCTGGCGCTGTGCAACGACCGGCCCAACAAACTGGAG GGCCCCTGGCGCTGTGCAATGACCGGCCCAACAAACTGGAG < 41bp 0.502967915746501 0.71049652477414 NA NA prediction 0.415057218055278 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:401711 chr6:401710 synonymous SNV . 0 20 hm7G_associated_SNPs_30797 0 0 0 0 1 IRF4 chr6:401777 5'GT 401777 Upstream 68bp 28211 chr15 42136708 42136708 1 + C T STAD 42136709 + 42136689 42136729 41 GGCCACTGGTGGTGGGATCCGGGCAATGACTTCCCTGTATG GGCCACTGGTGGTGGGATCTGGGCAATGACTTCCCTGTATG < 41bp 0.53213969969216 0.739664819675716 NA NA prediction 0.415050239967112 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42136709 chr15:42136708 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_30799 0 0 1 0 2 JMJD7-PLA2G4B;PLA2G4B chr15:42136669 3'AG 42136669 Downstream 40bp 28212 chr15 42136708 42136708 1 + C T STAD 42136709 + 42136689 42136729 41 GGCCACTGGTGGTGGGATCCGGGCAATGACTTCCCTGTATG GGCCACTGGTGGTGGGATCTGGGCAATGACTTCCCTGTATG < 41bp 0.53213969969216 0.739664819675716 NA NA prediction 0.415050239967112 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42136709 chr15:42136708 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_30799 0 0 1 0 2 JMJD7-PLA2G4B;PLA2G4B chr15:42136805 5'GT 42136805 Upstream 98bp 28213 chr16 50642216 50642216 1 + C T STAD 50642217 + 50642197 50642237 41 TCTTGTAGGAGCTCGTGGGCGACGTGTTGAGAGACACGCTC TCTTGTAGGAGCTCGTGGGTGACGTGTTGAGAGACACGCTC < 41bp 0.519188751552321 0.726712164597756 NA NA prediction 0.41504682609087 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50642217 chr16:50642216 synonymous SNV . 0 20 hm7G_associated_SNPs_30802 0 0 1 0 2 NKD1 chr16:50642205 3'AG 50642205 Downstream 12bp 28214 chr16 50642216 50642216 1 + C T STAD 50642217 + 50642197 50642237 41 TCTTGTAGGAGCTCGTGGGCGACGTGTTGAGAGACACGCTC TCTTGTAGGAGCTCGTGGGTGACGTGTTGAGAGACACGCTC < 41bp 0.519188751552321 0.726712164597756 NA NA prediction 0.41504682609087 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50642217 chr16:50642216 synonymous SNV . 0 20 hm7G_associated_SNPs_30802 0 0 1 0 2 NKD1 chr16:50642271 5'GT 50642271 Upstream 56bp 28215 chr16 68713831 68713831 1 + G A rs148598245 68713832 + 68713812 68713852 41 CTCATGTTCACCATTCACCGGAGCACAGGCACCATCAGCGT CTCATGTTCACCATTCACCAGAGCACAGGCACCATCAGCGT < 41bp 0.501117973644267 0.708636809546029 NA NA prediction 0.415037671803524 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68713832 chr16:68713831 nonsynonymous SNV 0.302 0 20 hm7G_associated_SNPs_30808 0 0 0 0 1 CDH3 chr16:68713877 5'GT 68713877 Upstream 47bp 28216 chrX 69669618 69669618 1 + G A SKCM 69669619 + 69669599 69669639 41 GGGCGGTGGAGGCGCTGAAGGAGGCAGGCCCTGTGGTGCGA GGGCGGTGGAGGCGCTGAAAGAGGCAGGCCCTGTGGTGCGA < 41bp 0.48864950294107 0.707517940997617 NA NA prediction 0.415035881995234 Functional Gain - DLG3 ENSG00000082458 CDS Human protein_coding chrX:69669619 chrX:69669618 synonymous SNV . 0 20 hm7G_associated_SNPs_30809 0 0 0 0 1 DLG3 chrX:69669709 5'GT 69669709 Upstream 92bp 28217 chr1 9781856 9781856 1 + G A CESC 9781857 + 9781837 9781877 41 GTCGGTGGCCCTGCGCTTCGGCCTCATCCTGGAGGCCTACT GTCGGTGGCCCTGCGCTTCAGCCTCATCCTGGAGGCCTACT < 41bp 0.48179384269402 0.707516103729302 NA NA prediction 0.415032207458604 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781857 chr1:9781856 nonsynonymous SNV 0.888 3 20 hm7G_associated_SNPs_30813 0 0 1 0 2 PIK3CD chr1:9781819 3'AG 9781819 Downstream 38bp 28218 chr1 9781856 9781856 1 + G A CESC 9781857 + 9781837 9781877 41 GTCGGTGGCCCTGCGCTTCGGCCTCATCCTGGAGGCCTACT GTCGGTGGCCCTGCGCTTCAGCCTCATCCTGGAGGCCTACT < 41bp 0.48179384269402 0.707516103729302 NA NA prediction 0.415032207458604 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781857 chr1:9781856 nonsynonymous SNV 0.888 3 20 hm7G_associated_SNPs_30813 0 0 1 0 2 PIK3CD chr1:9781918 5'GT 9781918 Upstream 63bp 28219 chr20 37126084 37126084 1 + C T COAD 37126085 + 37126065 37126105 41 TGAGTCATCTCTCATGGCCCGAGAAACTTGGGAAGTCTTAC TGAGTCATCTCTCATGGCCTGAGAAACTTGGGAAGTCTTAC < 41bp 0.513523142627706 0.721037106567721 NA NA prediction 0.41502792788003 Functional Gain - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37126085 chr20:37126084 stopgain 0.998 1 20 hm7G_associated_SNPs_30815 0 0 1 0 2 RALGAPB chr20:37125996 3'AG 37125996 Downstream 89bp 28220 chr20 37126084 37126084 1 + C T COAD 37126085 + 37126065 37126105 41 TGAGTCATCTCTCATGGCCCGAGAAACTTGGGAAGTCTTAC TGAGTCATCTCTCATGGCCTGAGAAACTTGGGAAGTCTTAC < 41bp 0.513523142627706 0.721037106567721 NA NA prediction 0.41502792788003 Functional Gain - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37126085 chr20:37126084 stopgain 0.998 1 20 hm7G_associated_SNPs_30815 0 0 1 0 2 RALGAPB chr20:37126159 5'GT 37126159 Upstream 76bp 28221 chr22 29630153 29630153 1 + G A SKCM 29630154 + 29630134 29630174 41 AGGCCCCACTGGACCCAAAGGAATCTCTGGCCACCCAGGAG AGGCCCCACTGGACCCAAAAGAATCTCTGGCCACCCAGGAG < 41bp 0.530009218134157 0.737521982612004 NA NA prediction 0.415025528955694 Functional Gain - EMID1 ENSG00000186998 CDS Human protein_coding chr22:29630154 chr22:29630153 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30816 0 0 0 0 1 EMID1 chr22:29630126 3'AG 29630126 Downstream 28bp 28222 chr8 2040209 2040209 1 + C T STAD 2040210 + 2040190 2040230 41 GGGTCGGGTTCTTGCTTCCCGAAACACCAAGACGTCGGTGG GGGTCGGGTTCTTGCTTCCTGAAACACCAAGACGTCGGTGG < 41bp 0.529628395823143 0.737139511167109 NA NA prediction 0.415022230687933 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2040210 chr8:2040209 stopgain 0.021 1 20 hm7G_associated_SNPs_30817 0 0 0 0 1 MYOM2 chr8:2040174 3'AG 2040174 Downstream 36bp 28223 chr15 91433451 91433451 1 + C T STAD 91433452 + 91433432 91433472 41 AGCTGGAGCACCTGGGCCCCGGCGAGCCCCCGCCTGTGCTG AGCTGGAGCACCTGGGCCCTGGCGAGCCCCCGCCTGTGCTG < 41bp 0.502671498582973 0.710182528372336 NA NA prediction 0.415022059578726 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91433452 chr15:91433451 synonymous SNV . 0 20 hm7G_associated_SNPs_30818 0 0 0 0 1 FES chr15:91433508 5'GT 91433508 Upstream 58bp 28224 chr11 82625793 82625793 1 + C T GBM 82625794 + 82625774 82625814 41 TGAACACATGAACAGAAGACGAAAATTTCTTCTAGCCTCAG TGAACACATGAACAGAAGATGAAAATTTCTTCTAGCCTCAG < 41bp 0.504836636376802 0.712347253751242 NA NA prediction 0.415021234748879 Functional Gain - DDIAS ENSG00000165490 CDS Human protein_coding chr11:82625794 chr11:82625793 stopgain 0.995 1 20 hm7G_associated_SNPs_30820 0 0 1 0 1 DDIAS chr11:82625765 3'AG 82625765 Downstream 29bp 28225 chr20 33588608 33588608 1 + C T UCEC 33588609 + 33588589 33588629 41 CAGAAGAAGAAGCTGGAGGCGGACTTGGCCCAGCTGAGCGG CAGAAGAAGAAGCTGGAGGTGGACTTGGCCCAGCTGAGCGG < 41bp 0.514943343112071 0.722453897269639 NA NA prediction 0.415021108315136 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33588609 chr20:33588608 nonsynonymous SNV 0.134 1 20 hm7G_associated_SNPs_30821 0 0 0 0 2 MYH7B chr20:33588571 3'AG 33588571 Downstream 38bp 28226 chr20 33588608 33588608 1 + C T UCEC 33588609 + 33588589 33588629 41 CAGAAGAAGAAGCTGGAGGCGGACTTGGCCCAGCTGAGCGG CAGAAGAAGAAGCTGGAGGTGGACTTGGCCCAGCTGAGCGG < 41bp 0.514943343112071 0.722453897269639 NA NA prediction 0.415021108315136 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33588609 chr20:33588608 nonsynonymous SNV 0.134 1 20 hm7G_associated_SNPs_30821 0 0 0 0 2 MYH7B chr20:33588696 5'GT 33588696 Upstream 89bp 28227 chr9 132620831 132620831 1 + G A UCEC 132620832 + 132620812 132620852 41 GAGGTATTCCTGGAGCAGCGGCTGGCAGCCCCTCTGCTGGG GAGGTATTCCTGGAGCAGCAGCTGGCAGCCCCTCTGCTGGG < 41bp 0.513429693098874 0.720939969297276 NA NA prediction 0.415020552396803 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132620832 chr9:132620831 nonsynonymous SNV 0.547 1 20 hm7G_associated_SNPs_30822 0 0 1 0 2 USP20 chr9:132620746 3'AG 132620746 Downstream 86bp 28228 chr9 132620831 132620831 1 + G A UCEC 132620832 + 132620812 132620852 41 GAGGTATTCCTGGAGCAGCGGCTGGCAGCCCCTCTGCTGGG GAGGTATTCCTGGAGCAGCAGCTGGCAGCCCCTCTGCTGGG < 41bp 0.513429693098874 0.720939969297276 NA NA prediction 0.415020552396803 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132620832 chr9:132620831 nonsynonymous SNV 0.547 1 20 hm7G_associated_SNPs_30822 0 0 1 0 2 USP20 chr9:132620877 5'GT 132620877 Upstream 47bp 28229 chr2 9525431 9525431 1 + C T STAD 9525432 + 9525412 9525452 41 TCACGTTGAATATGAATGGCGACTACTCCACGAAGACCTGG TCACGTTGAATATGAATGGTGACTACTCCACGAAGACCTGG < 41bp 0.521980099536861 0.729487257368825 NA NA prediction 0.415014315663927 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9525432 chr2:9525431 stopgain 0.892 1 20 hm7G_associated_SNPs_30824 0 0 1 0 2 ASAP2 chr2:9525374 3'AG 9525374 Downstream 58bp 28230 chr2 9525431 9525431 1 + C T STAD 9525432 + 9525412 9525452 41 TCACGTTGAATATGAATGGCGACTACTCCACGAAGACCTGG TCACGTTGAATATGAATGGTGACTACTCCACGAAGACCTGG < 41bp 0.521980099536861 0.729487257368825 NA NA prediction 0.415014315663927 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9525432 chr2:9525431 stopgain 0.892 1 20 hm7G_associated_SNPs_30824 0 0 1 0 2 ASAP2 chr2:9525487 5'GT 9525487 Upstream 57bp 28231 chr10 82276061 82276061 1 + C T rs72821609 82276062 + 82276042 82276082 41 TTGTGGCTGGCGTCTTCATCGCCATCTCGCTGTTGCAGGTG TTGTGGCTGGCGTCTTCATTGCCATCTCGCTGTTGCAGGTG < 41bp 0.514412601147131 0.721918957504638 NA NA prediction 0.415012712715013 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82276062 chr10:82276061 synonymous SNV . 0 20 hm7G_associated_SNPs_30825 0 0 1 0 1 TSPAN14 chr10:82276079 5'GT 82276079 Upstream 19bp 28232 chr16 81399036 81399036 1 + C T COAD 81399037 + 81399017 81399057 41 GTGAGGACGCCCAGGGTAGCGAGATGGTAACTTGCAAGTCC GTGAGGACGCCCAGGGTAGTGAGATGGTAACTTGCAAGTCC < 41bp 0.499048956160468 0.707505539259657 NA NA prediction 0.415011078519314 Functional Gain - GAN ENSG00000261609 CDS Human protein_coding chr16:81399037 chr16:81399036 synonymous SNV . 0 20 hm7G_associated_SNPs_30826 0 0 1 0 2 GAN chr16:81398955 3'AG 81398955 Downstream 82bp 28233 chr16 81399036 81399036 1 + C T COAD 81399037 + 81399017 81399057 41 GTGAGGACGCCCAGGGTAGCGAGATGGTAACTTGCAAGTCC GTGAGGACGCCCAGGGTAGTGAGATGGTAACTTGCAAGTCC < 41bp 0.499048956160468 0.707505539259657 NA NA prediction 0.415011078519314 Functional Gain - GAN ENSG00000261609 CDS Human protein_coding chr16:81399037 chr16:81399036 synonymous SNV . 0 20 hm7G_associated_SNPs_30826 0 0 1 0 2 GAN chr16:81399083 5'GT 81399083 Upstream 48bp 28234 chr12 120499627 120499627 1 + C T UCEC 120499628 + 120499608 120499648 41 GGCTGGAGAGCCTTCAGGCCGAGGTGAGCCTCCCGACACAG GGCTGGAGAGCCTTCAGGCTGAGGTGAGCCTCCCGACACAG < 41bp 0.522264159254436 0.729768367129122 NA NA prediction 0.415008415749373 Functional Gain - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120499628 chr12:120499627 synonymous SNV . 0 20 hm7G_associated_SNPs_30827 0 0 0 0 1 BICDL1 chr12:120499630 5'GT 120499630 Upstream 4bp 28235 chr22 21347142 21347142 1 + C T rs145833752 21347143 + 21347123 21347163 41 CGGACGCCATGTACATCTTCGGGGGCACGGTGGACAACAAC CGGACGCCATGTACATCTTTGGGGGCACGGTGGACAACAAC < 41bp 0.496386768105315 0.707503343834333 NA NA prediction 0.415006687668666 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21347143 chr22:21347142 synonymous SNV . 0 20 hm7G_associated_SNPs_30828 0 0 1 0 2 LZTR1 chr22:21347083 3'AG 21347083 Downstream 60bp 28236 chr22 21347142 21347142 1 + C T rs145833752 21347143 + 21347123 21347163 41 CGGACGCCATGTACATCTTCGGGGGCACGGTGGACAACAAC CGGACGCCATGTACATCTTTGGGGGCACGGTGGACAACAAC < 41bp 0.496386768105315 0.707503343834333 NA NA prediction 0.415006687668666 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21347143 chr22:21347142 synonymous SNV . 0 20 hm7G_associated_SNPs_30828 0 0 1 0 2 LZTR1 chr22:21347193 5'GT 21347193 Upstream 52bp 28237 chr22 39497965 39497965 1 + C T GBM 39497966 + 39497946 39497986 41 TTTGTGGACCACGAGAAACCGCTTTCCTTCAACCCCTATAA TTTGTGGACCACGAGAAACTGCTTTCCTTCAACCCCTATAA < 41bp 0.502535747479602 0.710038226366519 NA NA prediction 0.415004957773835 Functional Gain - APOBEC3H ENSG00000100298 CDS Human protein_coding chr22:39497966 chr22:39497965 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_30830 0 0 0 0 1 APOBEC3H chr22:39498047 5'GT 39498047 Upstream 83bp 28238 chr17 39977275 39977275 1 + G T COAD 39977276 + 39977256 39977296 41 CCTGGACACGGGCCTGCAGGGCATGTGTGTGGGAGAGAGGC CCTGGACACGGGCCTGCAGTGCATGTGTGTGGGAGAGAGGC < 41bp 0.708065612568651 0.915563826038872 NA NA prediction 0.414996426940442 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39977276 chr17:39977275 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_30833 0 0 1 0 2 FKBP10 chr17:39977199 3'AG 39977199 Downstream 77bp 28239 chr17 39977275 39977275 1 + G T COAD 39977276 + 39977256 39977296 41 CCTGGACACGGGCCTGCAGGGCATGTGTGTGGGAGAGAGGC CCTGGACACGGGCCTGCAGTGCATGTGTGTGGGAGAGAGGC < 41bp 0.708065612568651 0.915563826038872 NA NA prediction 0.414996426940442 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39977276 chr17:39977275 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_30833 0 0 1 0 2 FKBP10 chr17:39977341 5'GT 39977341 Upstream 67bp 28240 chr14 24523619 24523619 1 + G A UCEC 24523620 + 24523600 24523640 41 CCCAGATCCTGGTGGAGACGGAGCGTGGCATGGTGAGCATG CCCAGATCCTGGTGGAGACAGAGCGTGGCATGGTGAGCATG < 41bp 0.52951104175453 0.737007255230625 NA NA prediction 0.41499242695219 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24523620 chr14:24523619 synonymous SNV . 0 20 hm7G_associated_SNPs_30834 0 0 0 0 1 CARMIL3 chr14:24523605 3'AG 24523605 Downstream 15bp 28241 chr12 53449006 53449006 1 + C T STAD 53449007 + 53448987 53449027 41 GAAAAGGCATGACCTGACCCGCTTAAACCCCAAGGTATGAA GAAAAGGCATGACCTGACCTGCTTAAACCCCAAGGTATGAA < 41bp 0.500189444750609 0.707684352365518 NA NA prediction 0.41498981522982 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53449007 chr12:53449006 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_30835 0 0 1 0 2 TNS2 chr12:53448970 3'AG 53448970 Downstream 37bp 28242 chr12 53449006 53449006 1 + C T STAD 53449007 + 53448987 53449027 41 GAAAAGGCATGACCTGACCCGCTTAAACCCCAAGGTATGAA GAAAAGGCATGACCTGACCTGCTTAAACCCCAAGGTATGAA < 41bp 0.500189444750609 0.707684352365518 NA NA prediction 0.41498981522982 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53449007 chr12:53449006 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_30835 0 0 1 0 2 TNS2 chr12:53449020 5'GT 53449020 Upstream 15bp 28243 chr9 138669222 138669222 1 + C T LGG 138669223 + 138669203 138669243 41 ATGAAGACGCCAAGGCCTACGGGTTCAAGAACAAGCTGATC ATGAAGACGCCAAGGCCTATGGGTTCAAGAACAAGCTGATC < 41bp 0.50876656957421 0.716260610616739 NA NA prediction 0.414988082085058 Functional Gain - KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138669223 chr9:138669222 synonymous SNV . 0 20 hm7G_associated_SNPs_30836 0 0 0 0 1 KCNT1 chr9:138669184 3'AG 138669184 Downstream 39bp 28244 chr5 94927274 94927274 1 + C T SARC 94927275 + 94927255 94927295 41 TGGGACCAGGAATTAAAGCCGGCCTACAAGTATCAAATGTG TGGGACCAGGAATTAAAGCTGGCCTACAAGTATCAAATGTG < 41bp 0.498180082720135 0.707493088061392 NA NA prediction 0.414986176122784 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94927275 chr5:94927274 synonymous SNV . 0 20 hm7G_associated_SNPs_30837 0 0 0 0 1 ARSK chr5:94927329 5'GT 94927329 Upstream 56bp 28245 chr1 16375710 16375710 1 + C T STAD 16375711 + 16375691 16375731 41 CTGCGGGGCCTTCATGTTCCGGCTCCTGGCGGTCTTCAACA CTGCGGGGCCTTCATGTTCTGGCTCCTGGCGGTCTTCAACA < 41bp 0.495700070007787 0.707492046097794 NA NA prediction 0.414984092195587 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16375711 chr1:16375710 nonsynonymous SNV 0.490 5 20 hm7G_associated_SNPs_30838 0 0 0 0 1 CLCNKB chr1:16375615 3'AG 16375615 Downstream 96bp 28246 chr5 147040594 147040594 1 - C A LUAD 147040593 - 147040573 147040613 41 AGCAGATAAAATCAAGGCTGGGGACCTTCGGAGTGAGCATC AGCAGATAAAATCAAGGCTTGGGACCTTCGGAGTGAGCATC < 41bp 0.361402024139623 0.707491624500004 NA NA prediction 0.414983249000008 Functional Gain - JAKMIP2 ENSG00000176049 CDS Human protein_coding chr5:147040593 chr5:147040594 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30839 0 0 1 0 1 JAKMIP2 chr5:147040511 5'GT 147040511 Upstream 84bp 28247 chr9 916824 916824 1 + C T UCEC 916825 + 916805 916845 41 AGGATGCATTCTTACTACCCGCCTCCCTCTTACCTGGGCCA AGGATGCATTCTTACTACCTGCCTCCCTCTTACCTGGGCCA < 41bp 0.494285056212306 0.707490120408324 NA NA prediction 0.414980240816649 Functional Gain - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:916825 chr9:916824 nonsynonymous SNV 0.843 2 20 hm7G_associated_SNPs_30840 0 0 0 0 2 DMRT1 chr9:916763 3'AG 916763 Downstream 62bp 28248 chr9 916824 916824 1 + C T UCEC 916825 + 916805 916845 41 AGGATGCATTCTTACTACCCGCCTCCCTCTTACCTGGGCCA AGGATGCATTCTTACTACCTGCCTCCCTCTTACCTGGGCCA < 41bp 0.494285056212306 0.707490120408324 NA NA prediction 0.414980240816649 Functional Gain - DMRT1 ENSG00000137090 CDS Human protein_coding chr9:916825 chr9:916824 nonsynonymous SNV 0.843 2 20 hm7G_associated_SNPs_30840 0 0 0 0 2 DMRT1 chr9:916907 5'GT 916907 Upstream 84bp 28249 chr7 131130661 131130661 1 + G T LUSC 131130662 + 131130642 131130682 41 CCAAGAAAGACTCTGGGATGGGTAAGGGCATTGAGTGATTT CCAAGAAAGACTCTGGGATTGGTAAGGGCATTGAGTGATTT < 41bp 0.391281447032111 0.707490074336611 NA NA prediction 0.414980148673222 Functional Gain - MKLN1 ENSG00000128585 CDS Human protein_coding chr7:131130662 chr7:131130661 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_30841 0 0 1 0 1 MKLN1 chr7:131130662 5'GT 131130662 Upstream 2bp 28250 chr3 119121195 119121195 1 + C T UCEC 119121196 + 119121176 119121216 41 CTTTTCATGGATCAGAGAGCGGAGGCTGGCCAGAAGAAGAG CTTTTCATGGATCAGAGAGTGGAGGCTGGCCAGAAGAAGAG < 41bp 0.542830281519527 0.750320338702798 NA NA prediction 0.414980114366542 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119121196 chr3:119121195 synonymous SNV . 0 20 hm7G_associated_SNPs_30842 0 0 0 0 1 ARHGAP31 chr3:119121244 5'GT 119121244 Upstream 50bp 28251 chr7 116312565 116312565 1 + G T rs555011707 116312566 + 116312546 116312586 41 ACTTGCTGAGAGGAGGCGGGGAGGCGCGGAGCGCGCGTGTG ACTTGCTGAGAGGAGGCGGTGAGGCGCGGAGCGCGCGTGTG < 41bp 0.63993619131439 0.847426188082363 NA NA prediction 0.414979993535945 Functional Gain - MET ENSG00000105976 UTR5 Human protein_coding chr7:116312566 chr7:116312565 . . 0 20 hm7G_associated_SNPs_30843 0 0 1 0 1 MET chr7:116312631 5'GT 116312631 Upstream 67bp 28252 chr2 150061778 150061778 1 + C T COAD 150061779 + 150061759 150061799 41 CACCATAGATATAAGAGTTCGGACCGCCCAGCACACAAGGT CACCATAGATATAAGAGTTTGGACCGCCCAGCACACAAGGT < 41bp 0.510100488270071 0.717589989345509 NA NA prediction 0.414979002150877 Functional Gain - LYPD6B ENSG00000150556 CDS Human protein_coding chr2:150061779 chr2:150061778 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_30844 0 0 0 0 1 LYPD6B chr2:150061767 3'AG 150061767 Downstream 12bp 28253 chr7 149422981 149422981 1 + C T rs200742189 149422982 + 149422962 149423002 41 GTGCTGTTCCCTACAGAAGCGACCAGAGAGCCTGTTCTGCC GTGCTGTTCCCTACAGAAGTGACCAGAGAGCCTGTTCTGCC < 41bp 0.499653698888937 0.707486245305809 NA NA prediction 0.414972490611618 Functional Gain - KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149422982 chr7:149422981 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_30846 0 0 1 0 1 KRBA1 chr7:149422978 3'AG 149422978 Downstream 4bp 28254 chr1 160151550 160151550 1 + C T OV 160151551 + 160151531 160151571 41 ATCGTGGTTGTGCAGTGGGCGGATCTCATCATCTCCAAGAC ATCGTGGTTGTGCAGTGGGTGGATCTCATCATCTCCAAGAC < 41bp 0.49648239922843 0.707485710875635 NA NA prediction 0.41497142175127 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160151551 chr1:160151550 nonsynonymous SNV 0.977 5 20 hm7G_associated_SNPs_30847 0 0 0 1 2 ATP1A4 chr1:160151474 3'AG 160151474 Downstream 77bp 28255 chr1 160151550 160151550 1 + C T OV 160151551 + 160151531 160151571 41 ATCGTGGTTGTGCAGTGGGCGGATCTCATCATCTCCAAGAC ATCGTGGTTGTGCAGTGGGTGGATCTCATCATCTCCAAGAC < 41bp 0.49648239922843 0.707485710875635 NA NA prediction 0.41497142175127 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160151551 chr1:160151550 nonsynonymous SNV 0.977 5 20 hm7G_associated_SNPs_30847 0 0 0 1 2 ATP1A4 chr1:160151604 5'GT 160151604 Upstream 55bp 28256 chr1 15807638 15807638 1 + G A STAD 15807639 + 15807619 15807659 41 CCAGTGGTACCACACCTGCGGAGGGTCCCTGATAGCCAACA CCAGTGGTACCACACCTGCAGAGGGTCCCTGATAGCCAACA < 41bp 0.519733140422415 0.727218422470051 NA NA prediction 0.414970564095273 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15807639 chr1:15807638 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_30848 0 0 0 0 2 CELA2B chr1:15807593 3'AG 15807593 Downstream 46bp 28257 chr1 15807638 15807638 1 + G A STAD 15807639 + 15807619 15807659 41 CCAGTGGTACCACACCTGCGGAGGGTCCCTGATAGCCAACA CCAGTGGTACCACACCTGCAGAGGGTCCCTGATAGCCAACA < 41bp 0.519733140422415 0.727218422470051 NA NA prediction 0.414970564095273 Functional Gain - CELA2B ENSG00000215704 CDS Human protein_coding chr1:15807639 chr1:15807638 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_30848 0 0 0 0 2 CELA2B chr1:15807690 5'GT 15807690 Upstream 53bp 28258 chr10 104233463 104233463 1 + G A COAD 104233464 + 104233444 104233484 41 TCATGTTGTTGGCCGGCCCGGACCACCTCAGCCTGCTGTGC TCATGTTGTTGGCCGGCCCAGACCACCTCAGCCTGCTGTGC < 41bp 0.527259648504415 0.734744260620725 NA NA prediction 0.41496922423262 Functional Gain - MFSD13A ENSG00000138111 CDS Human protein_coding chr10:104233464 chr10:104233463 synonymous SNV . 0 20 hm7G_associated_SNPs_30849 0 0 1 0 1 MFSD13A chr10:104233498 5'GT 104233498 Upstream 36bp 28259 chr7 150741246 150741246 1 + C T SKCM 150741247 + 150741227 150741267 41 GGTGCTGGTAATTGCCCACCGGCTCAGCACTGTCCGTGGGG GGTGCTGGTAATTGCCCACTGGCTCAGCACTGTCCGTGGGG < 41bp 0.505695981522822 0.713180588387086 NA NA prediction 0.414969213728528 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150741247 chr7:150741246 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_30850 0 0 1 0 1 ABCB8 chr7:150741308 5'GT 150741308 Upstream 63bp 28260 chr1 6505797 6505797 1 + G A SKCM 6505798 + 6505778 6505818 41 CGGAGCTGGGCCTGCCTCGGGGCACGATTGGGAAGCCCACA CGGAGCTGGGCCTGCCTCGAGGCACGATTGGGAAGCCCACA < 41bp 0.467003058130704 0.707481526216471 NA NA prediction 0.414963052432943 Functional Gain - ESPN ENSG00000187017 CDS Human protein_coding chr1:6505798 chr1:6505797 synonymous SNV . 0 20 hm7G_associated_SNPs_30851 0 0 0 0 1 ESPN chr1:6505724 3'AG 6505724 Downstream 74bp 28261 chr12 109629710 109629710 1 + C T CESC 109629711 + 109629691 109629731 41 GCCTTGAACGTGGCCGATGCGATGTTCAGAACGTGCATGAC GCCTTGAACGTGGCCGATGTGATGTTCAGAACGTGCATGAC < 41bp 0.516902627686254 0.724382442432816 NA NA prediction 0.414959629493123 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109629711 chr12:109629710 nonsynonymous SNV 0.959 1 20 hm7G_associated_SNPs_30853 0 0 1 0 2 ACACB chr12:109629652 3'AG 109629652 Downstream 59bp 28262 chr12 109629710 109629710 1 + C T CESC 109629711 + 109629691 109629731 41 GCCTTGAACGTGGCCGATGCGATGTTCAGAACGTGCATGAC GCCTTGAACGTGGCCGATGTGATGTTCAGAACGTGCATGAC < 41bp 0.516902627686254 0.724382442432816 NA NA prediction 0.414959629493123 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109629711 chr12:109629710 nonsynonymous SNV 0.959 1 20 hm7G_associated_SNPs_30853 0 0 1 0 2 ACACB chr12:109629755 5'GT 109629755 Upstream 46bp 28263 chr15 41227173 41227173 1 + C T UCEC 41227174 + 41227154 41227194 41 AACACAGCACCTTGAGCTGCGCCGACTCCCCCTGCTTCAAT AACACAGCACCTTGAGCTGTGCCGACTCCCCCTGCTTCAAT < 41bp 0.497566454937075 0.707479051748888 NA NA prediction 0.414958103497776 Functional Gain - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41227174 chr15:41227173 synonymous SNV . 0 20 hm7G_associated_SNPs_30854 0 0 0 0 1 DLL4 chr15:41227096 3'AG 41227096 Downstream 78bp 28264 chr19 1005509 1005509 1 + G A SKCM 1005510 + 1005490 1005530 41 CTGGCTGCCGTCATGGTCGGGGACAAGACCTTCGAGGAGCT CTGGCTGCCGTCATGGTCGAGGACAAGACCTTCGAGGAGCT < 41bp 0.541179899618382 0.748658543853058 NA NA prediction 0.414957288469352 Functional Gain - GRIN3B ENSG00000116032 CDS Human protein_coding chr19:1005510 chr19:1005509 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_30855 0 0 0 0 1 GRIN3B chr19:1005552 5'GT 1005552 Upstream 44bp 28265 chr20 4680430 4680430 1 + G A STAD 4680431 + 4680411 4680451 41 TCACAATCAAGCAGCACACGGTCACCACAACCACCAAGGGG TCACAATCAAGCAGCACACAGTCACCACAACCACCAAGGGG < 41bp 0.503932159801202 0.711409827650898 NA NA prediction 0.414955335699392 Functional Gain - PRNP ENSG00000171867 CDS Human protein_coding chr20:4680431 chr20:4680430 synonymous SNV . 0 20 hm7G_associated_SNPs_30856 0 0 1 0 1 PRNP chr20:4680516 5'GT 4680516 Upstream 87bp 28266 chr17 74934143 74934143 1 + G A LUAD 74934144 + 74934124 74934164 41 GTGTACTACGAGAGCCAGCGGCCCCCCGAGGTGCCAGCCTT GTGTACTACGAGAGCCAGCAGCCCCCCGAGGTGCCAGCCTT < 41bp 0.55967863657218 0.767153506868292 NA NA prediction 0.414949740592224 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74934144 chr17:74934143 nonsynonymous SNV 0.953 3 20 hm7G_associated_SNPs_30857 0 0 0 0 2 MGAT5B chr17:74934070 3'AG 74934070 Downstream 74bp 28267 chr17 74934143 74934143 1 + G A LUAD 74934144 + 74934124 74934164 41 GTGTACTACGAGAGCCAGCGGCCCCCCGAGGTGCCAGCCTT GTGTACTACGAGAGCCAGCAGCCCCCCGAGGTGCCAGCCTT < 41bp 0.55967863657218 0.767153506868292 NA NA prediction 0.414949740592224 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74934144 chr17:74934143 nonsynonymous SNV 0.953 3 20 hm7G_associated_SNPs_30857 0 0 0 0 2 MGAT5B chr17:74934225 5'GT 74934225 Upstream 83bp 28268 chr22 24919647 24919647 1 + G A rs118163237 24919648 + 24919628 24919668 41 GCAGCCCCTGACAGCAGCCGGACTCCTGGGCTGTCCCGTAG GCAGCCCCTGACAGCAGCCAGACTCCTGGGCTGTCCCGTAG < 41bp 0.525270450436969 0.732742627901693 NA NA prediction 0.414944354929447 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919648 chr22:24919647 nonsynonymous SNV 0.760 4 20 hm7G_associated_SNPs_30859 2 0 0 0 2 UPB1 chr22:24919587 3'AG 24919587 Downstream 61bp 28269 chr22 24919647 24919647 1 + G A rs118163237 24919648 + 24919628 24919668 41 GCAGCCCCTGACAGCAGCCGGACTCCTGGGCTGTCCCGTAG GCAGCCCCTGACAGCAGCCAGACTCCTGGGCTGTCCCGTAG < 41bp 0.525270450436969 0.732742627901693 NA NA prediction 0.414944354929447 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919648 chr22:24919647 nonsynonymous SNV 0.760 4 20 hm7G_associated_SNPs_30859 2 0 0 0 2 UPB1 chr22:24919741 5'GT 24919741 Upstream 95bp 28270 chr1 60328543 60328543 1 + C T UCEC 60328544 + 60328524 60328564 41 AAGGTTCCAAGTCTGAAGGCGAAAGTGTAAGTAACTTAGAA AAGGTTCCAAGTCTGAAGGTGAAAGTGTAAGTAACTTAGAA < 41bp 0.514759699769133 0.722231281435667 NA NA prediction 0.414943163333068 Functional Gain - HOOK1 ENSG00000134709 CDS Human protein_coding chr1:60328544 chr1:60328543 synonymous SNV . 0 20 hm7G_associated_SNPs_30860 0 0 0 0 1 HOOK1 chr1:60328456 3'AG 60328456 Downstream 88bp 28271 chr7 107545874 107545874 1 + C T rs144351432 107545875 + 107545855 107545895 41 CTGCTACGAAAGCTGATGGCGGCACTCAGGTTATTGATACA CTGCTACGAAAGCTGATGGTGGCACTCAGGTTATTGATACA < 41bp 0.530949720589745 0.738421215035612 NA NA prediction 0.414942988891735 Functional Gain - DLD ENSG00000091140 CDS Human protein_coding chr7:107545875 chr7:107545874 synonymous SNV . 0 20 hm7G_associated_SNPs_30861 0 0 1 1 2 DLD chr7:107545806 3'AG 107545806 Downstream 69bp 28272 chr7 107545874 107545874 1 + C T rs144351432 107545875 + 107545855 107545895 41 CTGCTACGAAAGCTGATGGCGGCACTCAGGTTATTGATACA CTGCTACGAAAGCTGATGGTGGCACTCAGGTTATTGATACA < 41bp 0.530949720589745 0.738421215035612 NA NA prediction 0.414942988891735 Functional Gain - DLD ENSG00000091140 CDS Human protein_coding chr7:107545875 chr7:107545874 synonymous SNV . 0 20 hm7G_associated_SNPs_30861 0 0 1 1 2 DLD chr7:107545949 5'GT 107545949 Upstream 76bp 28273 chr10 13214639 13214639 1 + C T CESC 13214640 + 13214620 13214660 41 TTAAGTAGAGAAGTCTCCCCGGCCACCTCTTAAGGAGAGGA TTAAGTAGAGAAGTCTCCCTGGCCACCTCTTAAGGAGAGGA < 41bp 0.50370616205771 0.711177030649326 NA NA prediction 0.414941737183233 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214640 chr10:13214639 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_30862 0 0 0 0 2 MCM10 chr10:13214625 3'AG 13214625 Downstream 15bp 28274 chr10 13214639 13214639 1 + C T CESC 13214640 + 13214620 13214660 41 TTAAGTAGAGAAGTCTCCCCGGCCACCTCTTAAGGAGAGGA TTAAGTAGAGAAGTCTCCCTGGCCACCTCTTAAGGAGAGGA < 41bp 0.50370616205771 0.711177030649326 NA NA prediction 0.414941737183233 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13214640 chr10:13214639 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_30862 0 0 0 0 2 MCM10 chr10:13214628 3'AG 13214628 Downstream 12bp 28275 chr1 151630819 151630819 1 + C T DLBC 151630820 + 151630800 151630840 41 TGCCAACTTTACATTTCCTCGACTCCCAGGGAAGTGGCCAT TGCCAACTTTACATTTCCTTGACTCCCAGGGAAGTGGCCAT < 41bp 0.537092006461743 0.744562749166228 NA NA prediction 0.414941485408971 Functional Gain - SNX27 ENSG00000143376 CDS Human protein_coding chr1:151630820 chr1:151630819 stopgain 0.998 1 20 hm7G_associated_SNPs_30863 0 0 1 0 1 SNX27 chr1:151630903 5'GT 151630903 Upstream 85bp 28276 chr13 45582940 45582940 1 + G T LIHC 45582941 + 45582921 45582961 41 ATTTTTCAGGCCCATAATAGGTCCTGCATTGCCACCTGGTT ATTTTTCAGGCCCATAATATGTCCTGCATTGCCACCTGGTT < 41bp 0.388237845157092 0.707467372610913 NA NA prediction 0.414934745221825 Functional Gain - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45582941 chr13:45582940 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_30864 0 0 0 1 2 GPALPP1 chr13:45582930 3'AG 45582930 Downstream 11bp 28277 chr13 45582940 45582940 1 + G T LIHC 45582941 + 45582921 45582961 41 ATTTTTCAGGCCCATAATAGGTCCTGCATTGCCACCTGGTT ATTTTTCAGGCCCATAATATGTCCTGCATTGCCACCTGGTT < 41bp 0.388237845157092 0.707467372610913 NA NA prediction 0.414934745221825 Functional Gain - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45582941 chr13:45582940 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_30864 0 0 0 1 2 GPALPP1 chr13:45583014 5'GT 45583014 Upstream 75bp 28278 chr19 36271878 36271878 1 + C T LGG 36271879 + 36271859 36271899 41 CCGCACCTTCATGCGCTCCCGCCCTTCTCGGCAGCGGCTGC CCGCACCTTCATGCGCTCCTGCCCTTCTCGGCAGCGGCTGC < 41bp 0.491932902470145 0.707465820843153 NA NA prediction 0.414931641686306 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36271879 chr19:36271878 nonsynonymous SNV 0.619 4 20 hm7G_associated_SNPs_30866 0 0 0 0 2 ARHGAP33 chr19:36271822 3'AG 36271822 Downstream 57bp 28279 chr19 36271878 36271878 1 + C T LGG 36271879 + 36271859 36271899 41 CCGCACCTTCATGCGCTCCCGCCCTTCTCGGCAGCGGCTGC CCGCACCTTCATGCGCTCCTGCCCTTCTCGGCAGCGGCTGC < 41bp 0.491932902470145 0.707465820843153 NA NA prediction 0.414931641686306 Functional Gain - ARHGAP33 ENSG00000004777 CDS Human protein_coding chr19:36271879 chr19:36271878 nonsynonymous SNV 0.619 4 20 hm7G_associated_SNPs_30866 0 0 0 0 2 ARHGAP33 chr19:36271974 5'GT 36271974 Upstream 97bp 28280 chr5 35861023 35861023 1 + C T LIHC 35861024 + 35861004 35861044 41 CAGTTGGAAGTGAATGGATCGCAGCACTCACTGACCTGTGC CAGTTGGAAGTGAATGGATTGCAGCACTCACTGACCTGTGC < 41bp 0.52144101711354 0.728906207138921 NA NA prediction 0.414930380050763 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35861024 chr5:35861023 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_30868 1 0 0 0 2 IL7R chr5:35860954 3'AG 35860954 Downstream 70bp 28281 chr5 35861023 35861023 1 + C T LIHC 35861024 + 35861004 35861044 41 CAGTTGGAAGTGAATGGATCGCAGCACTCACTGACCTGTGC CAGTTGGAAGTGAATGGATTGCAGCACTCACTGACCTGTGC < 41bp 0.52144101711354 0.728906207138921 NA NA prediction 0.414930380050763 Functional Gain - IL7R ENSG00000168685 CDS Human protein_coding chr5:35861024 chr5:35861023 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_30868 1 0 0 0 2 IL7R chr5:35861092 5'GT 35861092 Upstream 70bp 28282 chr1 160151576 160151576 1 + C T COAD 160151577 + 160151557 160151597 41 CATCATCTCCAAGACTCGCCGCAACTCACTTTTCCAGCAGG CATCATCTCCAAGACTCGCTGCAACTCACTTTTCCAGCAGG < 41bp 0.50910719904577 0.716568745927675 NA NA prediction 0.41492309376381 Functional Gain - ATP1A4 ENSG00000132681 CDS Human protein_coding chr1:160151577 chr1:160151576 nonsynonymous SNV 0.047 5 20 hm7G_associated_SNPs_30870 0 0 0 0 1 ATP1A4 chr1:160151604 5'GT 160151604 Upstream 29bp 28283 chrX 18646646 18646646 1 + C T UCEC 18646647 + 18646627 18646667 41 CCCTGAGCCAGGCCTCTGGCGGGAGCAGCAACATCCGGCAG CCCTGAGCCAGGCCTCTGGTGGGAGCAGCAACATCCGGCAG < 41bp 0.514313527943748 0.721773742450978 NA NA prediction 0.414920429014461 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18646647 chrX:18646646 synonymous SNV . 0 20 hm7G_associated_SNPs_30871 0 0 0 0 1 CDKL5 chrX:18646707 5'GT 18646707 Upstream 62bp 28284 chr13 113487323 113487323 1 + C T COAD 113487324 + 113487304 113487344 41 CCGACGAGGTGGCGCTGGTCGAAGGTGTCCAGAGGTACGTC CCGACGAGGTGGCGCTGGTTGAAGGTGTCCAGAGGTACGTC < 41bp 0.525453446289396 0.732912827449784 NA NA prediction 0.414918762320775 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113487324 chr13:113487323 synonymous SNV . 0 20 hm7G_associated_SNPs_30872 0 0 1 0 1 ATP11A chr13:113487337 5'GT 113487337 Upstream 15bp 28285 chr16 88688690 88688690 1 + C T GBM 88688691 + 88688671 88688711 41 GTGGAAGGACCCTTGGCGCCGATCCAAGTCTCCCAAGAAGA GTGGAAGGACCCTTGGCGCTGATCCAAGTCTCCCAAGAAGA < 41bp 0.489874316292329 0.707455335760807 NA NA prediction 0.414910671521614 Functional Gain - ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88688691 chr16:88688690 stopgain 0.990 1 20 hm7G_associated_SNPs_30875 0 0 1 0 1 ZC3H18 chr16:88688605 3'AG 88688605 Downstream 86bp 28286 chr16 88872462 88872462 1 + C T CESC 88872463 + 88872443 88872483 41 GCCCCCCAGCTCACGGCCTCGCGCCTCCTGCAGCGACGGCA GCCCCCCAGCTCACGGCCTTGCGCCTCCTGCAGCGACGGCA < 41bp 0.522723302458596 0.730178322439316 NA NA prediction 0.414910039961438 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88872463 chr16:88872462 nonsynonymous SNV 0.438 4 20 hm7G_associated_SNPs_30876 0 0 1 0 2 CDT1 chr16:88872429 3'AG 88872429 Downstream 34bp 28287 chr16 88872462 88872462 1 + C T CESC 88872463 + 88872443 88872483 41 GCCCCCCAGCTCACGGCCTCGCGCCTCCTGCAGCGACGGCA GCCCCCCAGCTCACGGCCTTGCGCCTCCTGCAGCGACGGCA < 41bp 0.522723302458596 0.730178322439316 NA NA prediction 0.414910039961438 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88872463 chr16:88872462 nonsynonymous SNV 0.438 4 20 hm7G_associated_SNPs_30876 0 0 1 0 2 CDT1 chr16:88872529 5'GT 88872529 Upstream 68bp 28288 chr10 101605455 101605455 1 + C T rs17216275 101605456 + 101605436 101605476 41 TCAGAATCTTAGAGGCTGCCGGTGGTCAGATTATCATTGAT TCAGAATCTTAGAGGCTGCTGGTGGTCAGATTATCATTGAT < 41bp 0.531510511618473 0.738965359494238 NA NA prediction 0.414909695751531 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101605456 chr10:101605455 synonymous SNV . 0 20 hm7G_associated_SNPs_30877 1 0 1 0 2 ABCC2 chr10:101605381 3'AG 101605381 Downstream 75bp 28289 chr10 101605455 101605455 1 + C T rs17216275 101605456 + 101605436 101605476 41 TCAGAATCTTAGAGGCTGCCGGTGGTCAGATTATCATTGAT TCAGAATCTTAGAGGCTGCTGGTGGTCAGATTATCATTGAT < 41bp 0.531510511618473 0.738965359494238 NA NA prediction 0.414909695751531 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101605456 chr10:101605455 synonymous SNV . 0 20 hm7G_associated_SNPs_30877 1 0 1 0 2 ABCC2 chr10:101605539 5'GT 101605539 Upstream 85bp 28290 chr1 156844747 156844747 1 + C T SKCM 156844748 + 156844728 156844768 41 GCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAA GCCTGCCTCTTCCTTTCTATGCTGCTCCTTGTGCTCAACAA < 41bp 0.51849126576223 0.725940359971188 NA NA prediction 0.414898188417915 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156844748 chr1:156844747 nonsynonymous SNV 0.062 1 20 hm7G_associated_SNPs_30882 0 0 1 0 2 NTRK1 chr1:156844698 3'AG 156844698 Downstream 50bp 28291 chr1 156844747 156844747 1 + C T SKCM 156844748 + 156844728 156844768 41 GCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAA GCCTGCCTCTTCCTTTCTATGCTGCTCCTTGTGCTCAACAA < 41bp 0.51849126576223 0.725940359971188 NA NA prediction 0.414898188417915 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156844748 chr1:156844747 nonsynonymous SNV 0.062 1 20 hm7G_associated_SNPs_30882 0 0 1 0 2 NTRK1 chr1:156844800 5'GT 156844800 Upstream 54bp 28292 chr1 55136215 55136215 1 + C T PAAD 55136216 + 55136196 55136236 41 TTCTCTCTCAAGCTCCGTCCGCAAGCAGGCCATGGAGATCC TTCTCTCTCAAGCTCCGTCTGCAAGCAGGCCATGGAGATCC < 41bp 0.510067466555799 0.717514537904979 NA NA prediction 0.414894142698359 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55136216 chr1:55136215 nonsynonymous SNV 0.254 3 20 hm7G_associated_SNPs_30883 0 0 0 0 3 MROH7;MROH7 chr1:55136170 3'AG 55136170 Downstream 46bp 28293 chr1 55136215 55136215 1 + C T PAAD 55136216 + 55136196 55136236 41 TTCTCTCTCAAGCTCCGTCCGCAAGCAGGCCATGGAGATCC TTCTCTCTCAAGCTCCGTCTGCAAGCAGGCCATGGAGATCC < 41bp 0.510067466555799 0.717514537904979 NA NA prediction 0.414894142698359 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55136216 chr1:55136215 nonsynonymous SNV 0.254 3 20 hm7G_associated_SNPs_30883 0 0 0 0 3 MROH7 chr1:55136172 3'AG 55136172 Downstream 44bp 28294 chr1 55136215 55136215 1 + C T PAAD 55136216 + 55136196 55136236 41 TTCTCTCTCAAGCTCCGTCCGCAAGCAGGCCATGGAGATCC TTCTCTCTCAAGCTCCGTCTGCAAGCAGGCCATGGAGATCC < 41bp 0.510067466555799 0.717514537904979 NA NA prediction 0.414894142698359 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55136216 chr1:55136215 nonsynonymous SNV 0.254 3 20 hm7G_associated_SNPs_30883 0 0 0 0 3 MROH7 chr1:55136249 5'GT 55136249 Upstream 35bp 28295 chr12 10167249 10167249 1 + G T UCEC 10167250 + 10167230 10167270 41 ACAACTTGTCCATGGAGGAGGAATTTCTCAAGTCACAGATC ACAACTTGTCCATGGAGGATGAATTTCTCAAGTCACAGATC < 41bp 0.378867861922581 0.707446716939416 NA NA prediction 0.414893433878831 Functional Gain - CLEC12B ENSG00000256660 CDS Human protein_coding chr12:10167250 chr12:10167249 nonsynonymous SNV 0.392 1 20 hm7G_associated_SNPs_30884 0 0 0 1 1 CLEC12B chr12:10167340 5'GT 10167340 Upstream 92bp 28296 chr20 5753536 5753536 1 + G T LUSC 5753537 + 5753517 5753557 41 AGCCAGGGACGCCACTTCAGGCAGCCTGTCAGAGGAGAGCA AGCCAGGGACGCCACTTCATGCAGCCTGTCAGAGGAGAGCA < 41bp 0.701866096294705 0.909312808405824 NA NA prediction 0.414893424222238 Functional Gain - C20orf196 ENSG00000171984 CDS Human protein_coding chr20:5753537 chr20:5753536 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_30885 0 0 1 0 1 C20orf196 chr20:5753508 3'AG 5753508 Downstream 29bp 28297 chr2 169684718 169684718 1 + C T HNSC 169684719 + 169684699 169684739 41 GAGGGAATGAAATCCACAGCGGACCTGCATCAGTGAGTTCT GAGGGAATGAAATCCACAGTGGACCTGCATCAGTGAGTTCT < 41bp 0.500157953275712 0.707604585579019 NA NA prediction 0.414893264606615 Functional Gain - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169684719 chr2:169684718 nonsynonymous SNV 0.221 4 20 hm7G_associated_SNPs_30886 0 0 1 0 2 NOSTRIN chr2:169684668 3'AG 169684668 Downstream 51bp 28298 chr2 169684718 169684718 1 + C T HNSC 169684719 + 169684699 169684739 41 GAGGGAATGAAATCCACAGCGGACCTGCATCAGTGAGTTCT GAGGGAATGAAATCCACAGTGGACCTGCATCAGTGAGTTCT < 41bp 0.500157953275712 0.707604585579019 NA NA prediction 0.414893264606615 Functional Gain - NOSTRIN ENSG00000163072 CDS Human protein_coding chr2:169684719 chr2:169684718 nonsynonymous SNV 0.221 4 20 hm7G_associated_SNPs_30886 0 0 1 0 2 NOSTRIN chr2:169684730 5'GT 169684730 Upstream 13bp 28299 chr17 79954685 79954685 1 + G A COAD 79954686 + 79954666 79954706 41 CAGGAGCAGGAGCAGGAGCGGGAGCGGGATCCCCAGCAGGA CAGGAGCAGGAGCAGGAGCAGGAGCGGGATCCCCAGCAGGA < 41bp 0.556567270038125 0.76401187394629 NA NA prediction 0.414889207816331 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79954686 chr17:79954685 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_30888 0 0 1 0 1 ASPSCR1 chr17:79954722 5'GT 79954722 Upstream 38bp 28300 chr2 179255864 179255864 1 + C T COAD 179255865 + 179255845 179255885 41 ATAGATCAGGAGGGGAAGGCGGTGTACCGGCTGTTTGGAAA ATAGATCAGGAGGGGAAGGTGGTGTACCGGCTGTTTGGAAA < 41bp 0.528564617159329 0.736005421739574 NA NA prediction 0.414881609160491 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179255865 chr2:179255864 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_30890 0 0 0 0 2 OSBPL6 chr2:179255800 3'AG 179255800 Downstream 65bp 28301 chr2 179255864 179255864 1 + C T COAD 179255865 + 179255845 179255885 41 ATAGATCAGGAGGGGAAGGCGGTGTACCGGCTGTTTGGAAA ATAGATCAGGAGGGGAAGGTGGTGTACCGGCTGTTTGGAAA < 41bp 0.528564617159329 0.736005421739574 NA NA prediction 0.414881609160491 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179255865 chr2:179255864 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_30890 0 0 0 0 2 OSBPL6 chr2:179255944 5'GT 179255944 Upstream 81bp 28302 chr12 110565896 110565896 1 + C T KIRP 110565897 + 110565877 110565917 41 GCCAGAGCAGACAGCCAAACGAATGTTGAGCCTTCTTGGTA GCCAGAGCAGACAGCCAAATGAATGTTGAGCCTTCTTGGTA < 41bp 0.525589455081438 0.733026646028268 NA NA prediction 0.41487438189366 Functional Gain - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110565897 chr12:110565896 stopgain 0.986 1 20 hm7G_associated_SNPs_30891 0 0 1 0 2 IFT81 chr12:110565851 3'AG 110565851 Downstream 46bp 28303 chr12 110565896 110565896 1 + C T KIRP 110565897 + 110565877 110565917 41 GCCAGAGCAGACAGCCAAACGAATGTTGAGCCTTCTTGGTA GCCAGAGCAGACAGCCAAATGAATGTTGAGCCTTCTTGGTA < 41bp 0.525589455081438 0.733026646028268 NA NA prediction 0.41487438189366 Functional Gain - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110565897 chr12:110565896 stopgain 0.986 1 20 hm7G_associated_SNPs_30891 0 0 1 0 2 IFT81 chr12:110565954 5'GT 110565954 Upstream 59bp 28304 chr17 78081424 78081424 1 + C T UCEC 78081425 + 78081405 78081445 41 CTGTCCACCTCGCTGCCCTCGCAGTATATCACAGGCCTCGC CTGTCCACCTCGCTGCCCTTGCAGTATATCACAGGCCTCGC < 41bp 0.504193202761176 0.711627962262911 NA NA prediction 0.41486951900347 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78081425 chr17:78081424 nonsynonymous SNV 0.356 5 20 hm7G_associated_SNPs_30892 2 0 1 0 2 GAA chr17:78081356 3'AG 78081356 Downstream 69bp 28305 chr17 78081424 78081424 1 + C T UCEC 78081425 + 78081405 78081445 41 CTGTCCACCTCGCTGCCCTCGCAGTATATCACAGGCCTCGC CTGTCCACCTCGCTGCCCTTGCAGTATATCACAGGCCTCGC < 41bp 0.504193202761176 0.711627962262911 NA NA prediction 0.41486951900347 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78081425 chr17:78081424 nonsynonymous SNV 0.356 5 20 hm7G_associated_SNPs_30892 2 0 1 0 2 GAA chr17:78081521 5'GT 78081521 Upstream 98bp 28306 chr6 168276148 168276148 1 + C T LUSC 168276149 + 168276129 168276169 41 AAAGAGAATGCAGGAATTTCGGAGCTCAGATGGGCGGCCTG AAAGAGAATGCAGGAATTTTGGAGCTCAGATGGGCGGCCTG < 41bp 0.518567110140433 0.725997878728823 NA NA prediction 0.414861537176781 Functional Gain - AFDN ENSG00000130396 CDS Human protein_coding chr6:168276149 chr6:168276148 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30893 0 0 1 0 1 AFDN chr6:168276175 5'GT 168276175 Upstream 28bp 28307 chr15 91428647 91428647 1 + G A UCEC 91428648 + 91428628 91428668 41 TCTGTGCTGTATAGTCCTGGGCTGAGATCACCAGCCAAACT TCTGTGCTGTATAGTCCTGAGCTGAGATCACCAGCCAAACT < 41bp 0.542499853054173 0.74993014340353 NA NA prediction 0.414860580698714 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91428648 chr15:91428647 stopgain 0.952 1 20 hm7G_associated_SNPs_30894 0 0 0 0 1 FES chr15:91428642 3'AG 91428642 Downstream 6bp 28308 chr12 129373189 129373189 1 + C T SKCM 129373190 + 129373170 129373210 41 TCATCGTTTTGCAGGCCACCGAATCCCTTTTGGAGTCATCT TCATCGTTTTGCAGGCCACTGAATCCCTTTTGGAGTCATCT < 41bp 0.504008912055874 0.711438649499485 NA NA prediction 0.414859474887223 Functional Gain - GLT1D1 ENSG00000151948 CDS Human protein_coding chr12:129373190 chr12:129373189 stopgain 0.014 0 20 hm7G_associated_SNPs_30895 0 0 0 0 1 GLT1D1 chr12:129373184 3'AG 129373184 Downstream 6bp 28309 chr12 53509269 53509269 1 + C T SARC 53509270 + 53509250 53509290 41 TTTCTGTCCACCCTGTTGGCGCCGTACCAGGCCCTACGGCT TTTCTGTCCACCCTGTTGGTGCCGTACCAGGCCCTACGGCT < 41bp 0.493674654375263 0.707428976248594 NA NA prediction 0.414857952497188 Functional Gain - SOAT2 ENSG00000167780 CDS Human protein_coding chr12:53509270 chr12:53509269 nonsynonymous SNV 0.921 0 20 hm7G_associated_SNPs_30897 0 0 1 0 1 SOAT2 chr12:53509174 3'AG 53509174 Downstream 96bp 28310 chr20 31375128 31375128 1 + G A SKCM 31375129 + 31375109 31375149 41 ACCTCACAGACGACACAGAGGACACACATGGGACGCCCCAG ACCTCACAGACGACACAGAAGACACACATGGGACGCCCCAG < 41bp 0.509743820601028 0.717172757028051 NA NA prediction 0.414857872854048 Functional Gain - DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31375129 chr20:31375128 synonymous SNV . 0 20 hm7G_associated_SNPs_30898 0 0 1 0 1 DNMT3B chr20:31375036 3'AG 31375036 Downstream 93bp 28311 chr17 29250056 29250056 1 + C T PAAD 29250057 + 29250037 29250077 41 CAGCAGAGTTAAATCTGTGCGACTTGACTTCTGGGACGACA CAGCAGAGTTAAATCTGTGTGACTTGACTTCTGGGACGACA < 41bp 0.551366653785192 0.758795445036452 NA NA prediction 0.414857582502521 Functional Gain - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29250057 chr17:29250056 stopgain 0.965 0 20 hm7G_associated_SNPs_30899 0 0 0 0 2 ADAP2 chr17:29249958 3'AG 29249958 Downstream 99bp 28312 chr17 29250056 29250056 1 + C T PAAD 29250057 + 29250037 29250077 41 CAGCAGAGTTAAATCTGTGCGACTTGACTTCTGGGACGACA CAGCAGAGTTAAATCTGTGTGACTTGACTTCTGGGACGACA < 41bp 0.551366653785192 0.758795445036452 NA NA prediction 0.414857582502521 Functional Gain - ADAP2 ENSG00000184060 CDS Human protein_coding chr17:29250057 chr17:29250056 stopgain 0.965 0 20 hm7G_associated_SNPs_30899 0 0 0 0 2 ADAP2 chr17:29250088 5'GT 29250088 Upstream 33bp 28313 chr8 28876278 28876278 1 + C T STAD 28876279 + 28876259 28876299 41 GTGTCTTGTTTATTTCAGGCGCTACACTAAGTATGAGACCA GTGTCTTGTTTATTTCAGGTGCTACACTAAGTATGAGACCA < 41bp 0.499598634272714 0.707426607651125 NA NA prediction 0.414853215302251 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28876279 chr8:28876278 synonymous SNV . 0 20 hm7G_associated_SNPs_30901 0 0 1 0 1 HMBOX1 chr8:28876277 3'AG 28876277 Downstream 2bp 28314 chr10 98087277 98087277 1 + G T UCEC 98087278 + 98087258 98087298 41 TGACCAGGGCAGAAGCAGAGGCCGTCAGTGTGCTGGTTAAA TGACCAGGGCAGAAGCAGATGCCGTCAGTGTGCTGGTTAAA < 41bp 0.701712969643432 0.909139434860008 NA NA prediction 0.414852930433151 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98087278 chr10:98087277 nonsynonymous SNV 0.837 0 20 hm7G_associated_SNPs_30902 0 0 0 0 2 DNTT chr10:98087225 3'AG 98087225 Downstream 53bp 28315 chr10 98087277 98087277 1 + G T UCEC 98087278 + 98087258 98087298 41 TGACCAGGGCAGAAGCAGAGGCCGTCAGTGTGCTGGTTAAA TGACCAGGGCAGAAGCAGATGCCGTCAGTGTGCTGGTTAAA < 41bp 0.701712969643432 0.909139434860008 NA NA prediction 0.414852930433151 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98087278 chr10:98087277 nonsynonymous SNV 0.837 0 20 hm7G_associated_SNPs_30902 0 0 0 0 2 DNTT chr10:98087357 5'GT 98087357 Upstream 81bp 28316 chr16 67580114 67580114 1 + G A COAD 67580115 + 67580095 67580135 41 GCTGTGAGGGAAGCTGCCCGGCAAAGCCTACAGCAGTGTGG GCTGTGAGGGAAGCTGCCCAGCAAAGCCTACAGCAGTGTGG < 41bp 0.530799417690837 0.738225754364864 NA NA prediction 0.414852673348053 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67580115 chr16:67580114 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30903 0 0 1 0 2 RIPOR1 chr16:67580044 3'AG 67580044 Downstream 71bp 28317 chr16 67580114 67580114 1 + G A COAD 67580115 + 67580095 67580135 41 GCTGTGAGGGAAGCTGCCCGGCAAAGCCTACAGCAGTGTGG GCTGTGAGGGAAGCTGCCCAGCAAAGCCTACAGCAGTGTGG < 41bp 0.530799417690837 0.738225754364864 NA NA prediction 0.414852673348053 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67580115 chr16:67580114 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30903 0 0 1 0 2 RIPOR1 chr16:67580134 5'GT 67580134 Upstream 21bp 28318 chr3 183954327 183954327 1 + G A UCEC 183954328 + 183954308 183954348 41 GAGCTCATGAGGTGGCACAGGGGGACAGCCAGGTATGGGAT GAGCTCATGAGGTGGCACAAGGGGACAGCCAGGTATGGGAT < 41bp 0.488799666644105 0.707426178861241 NA NA prediction 0.414852357722482 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183954328 chr3:183954327 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_30904 0 0 0 0 1 VWA5B2 chr3:183954339 5'GT 183954339 Upstream 13bp 28319 chr7 138261153 138261153 1 + C T UCEC 138261154 + 138261134 138261174 41 TAGTGTACACCCCCCAATACGTTCACCTAGTGCCTCCAGCG TAGTGTACACCCCCCAATATGTTCACCTAGTGCCTCCAGCG < 41bp 0.499788859759701 0.707424937581234 NA NA prediction 0.414849875162467 Functional Gain - TRIM24 ENSG00000122779 CDS Human protein_coding chr7:138261154 chr7:138261153 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30905 0 0 1 0 2 TRIM24 chr7:138261118 3'AG 138261118 Downstream 36bp 28320 chr7 138261153 138261153 1 + C T UCEC 138261154 + 138261134 138261174 41 TAGTGTACACCCCCCAATACGTTCACCTAGTGCCTCCAGCG TAGTGTACACCCCCCAATATGTTCACCTAGTGCCTCCAGCG < 41bp 0.499788859759701 0.707424937581234 NA NA prediction 0.414849875162467 Functional Gain - TRIM24 ENSG00000122779 CDS Human protein_coding chr7:138261154 chr7:138261153 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30905 0 0 1 0 2 TRIM24 chr7:138261190 5'GT 138261190 Upstream 38bp 28321 chr17 72343981 72343981 1 + C T COAD 72343982 + 72343962 72344002 41 GTCCTGCGAGCAGTGCCTTCGAGGAGTCCCGGAACACCCTG GTCCTGCGAGCAGTGCCTTTGAGGAGTCCCGGAACACCCTG < 41bp 0.509088894849968 0.716513469350435 NA NA prediction 0.414849149000935 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72343982 chr17:72343981 synonymous SNV . 0 20 hm7G_associated_SNPs_30906 0 0 0 0 1 KIF19 chr17:72343916 3'AG 72343916 Downstream 66bp 28322 chr10 90503019 90503019 1 + G T LIHC 90503020 + 90503000 90503040 41 ATTTTAGGCTGTTAATTCTGGTCAGCTCCAAGCTTTTGATT ATTTTAGGCTGTTAATTCTTGTCAGCTCCAAGCTTTTGATT < 41bp 0.395581417827078 0.707423006246142 NA NA prediction 0.414846012492284 Functional Gain - LIPK ENSG00000204021 CDS Human protein_coding chr10:90503020 chr10:90503019 nonsynonymous SNV 0.911 3 20 hm7G_associated_SNPs_30907 0 0 0 0 2 LIPK chr10:90503007 3'AG 90503007 Downstream 13bp 28323 chr10 90503019 90503019 1 + G T LIHC 90503020 + 90503000 90503040 41 ATTTTAGGCTGTTAATTCTGGTCAGCTCCAAGCTTTTGATT ATTTTAGGCTGTTAATTCTTGTCAGCTCCAAGCTTTTGATT < 41bp 0.395581417827078 0.707423006246142 NA NA prediction 0.414846012492284 Functional Gain - LIPK ENSG00000204021 CDS Human protein_coding chr10:90503020 chr10:90503019 nonsynonymous SNV 0.911 3 20 hm7G_associated_SNPs_30907 0 0 0 0 2 LIPK chr10:90503078 5'GT 90503078 Upstream 60bp 28324 chr4 8620195 8620195 1 + G A BRCA 8620196 + 8620176 8620216 41 TGTGGTGACAGATAAATTCGGCAAGCCAGTCAAAAACGCCC TGTGGTGACAGATAAATTCAGCAAGCCAGTCAAAAACGCCC < 41bp 0.480154225763396 0.707422669821496 NA NA prediction 0.414845339642993 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8620196 chr4:8620195 nonsynonymous SNV 0.005 4 20 hm7G_associated_SNPs_30908 0 0 0 0 2 CPZ chr4:8620156 3'AG 8620156 Downstream 40bp 28325 chr4 8620195 8620195 1 + G A BRCA 8620196 + 8620176 8620216 41 TGTGGTGACAGATAAATTCGGCAAGCCAGTCAAAAACGCCC TGTGGTGACAGATAAATTCAGCAAGCCAGTCAAAAACGCCC < 41bp 0.480154225763396 0.707422669821496 NA NA prediction 0.414845339642993 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8620196 chr4:8620195 nonsynonymous SNV 0.005 4 20 hm7G_associated_SNPs_30908 0 0 0 0 2 CPZ chr4:8620255 5'GT 8620255 Upstream 61bp 28326 chr6 18212817 18212817 1 + C T PRAD 18212818 + 18212798 18212838 41 AGGCTATCAACAGCTTAGGCGCAGGCATCATTGAAAAGGTG AGGCTATCAACAGCTTAGGTGCAGGCATCATTGAAAAGGTG < 41bp 0.535093066257332 0.742515301037156 NA NA prediction 0.414844469559647 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18212818 chr6:18212817 synonymous SNV . 0 20 hm7G_associated_SNPs_30909 0 0 1 0 2 KDM1B chr6:18212719 3'AG 18212719 Downstream 99bp 28327 chr6 18212817 18212817 1 + C T PRAD 18212818 + 18212798 18212838 41 AGGCTATCAACAGCTTAGGCGCAGGCATCATTGAAAAGGTG AGGCTATCAACAGCTTAGGTGCAGGCATCATTGAAAAGGTG < 41bp 0.535093066257332 0.742515301037156 NA NA prediction 0.414844469559647 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18212818 chr6:18212817 synonymous SNV . 0 20 hm7G_associated_SNPs_30909 0 0 1 0 2 KDM1B chr6:18212835 5'GT 18212835 Upstream 19bp 28328 chr5 180419860 180419860 1 + G A LUAD 180419861 + 180419841 180419881 41 GTTTGTCCAGGCCTTGGTGGGGGAGGACGCCGTGTTCTCCT GTTTGTCCAGGCCTTGGTGAGGGAGGACGCCGTGTTCTCCT < 41bp 0.489143033512124 0.707420666295819 NA NA prediction 0.414841332591638 Functional Gain - BTNL3 ENSG00000168903 CDS Human protein_coding chr5:180419861 chr5:180419860 nonsynonymous SNV 0.022 4 20 hm7G_associated_SNPs_30910 0 0 0 0 1 BTNL3 chr5:180419813 3'AG 180419813 Downstream 48bp 28329 chr14 59789865 59789865 1 + G T SKCM 59789866 + 59789846 59789886 41 TCTTGGGCGCCGTGTGCCTGGTTCCCGGGGGCCACAAGAAG TCTTGGGCGCCGTGTGCCTTGTTCCCGGGGGCCACAAGAAG < 41bp 0.356111616427101 0.707418942525687 NA NA prediction 0.414837885051375 Functional Gain - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59789866 chr14:59789865 synonymous SNV . 0 20 hm7G_associated_SNPs_30912 0 0 1 0 1 DAAM1 chr14:59789943 5'GT 59789943 Upstream 79bp 28330 chr17 16323460 16323460 1 + C T COAD 16323461 + 16323441 16323481 41 AAACCGATTTGACCGAGATCGGCTCTTCAATGCGGTCTCCC AAACCGATTTGACCGAGATTGGCTCTTCAATGCGGTCTCCC < 41bp 0.525902599054991 0.733320166680893 NA NA prediction 0.414835135251802 Functional Gain - TRPV2 ENSG00000187688 CDS Human protein_coding chr17:16323461 chr17:16323460 nonsynonymous SNV 0.961 2 20 hm7G_associated_SNPs_30914 0 0 0 0 1 TRPV2 chr17:16323429 3'AG 16323429 Downstream 32bp 28331 chr9 134385175 134385175 1 + C T UCEC 134385176 + 134385156 134385196 41 GGCTAACACTGACAGGGGTCGCTTGTTCCTGTGCAGTGGGG GGCTAACACTGACAGGGGTTGCTTGTTCCTGTGCAGTGGGG < 41bp 0.524515574482159 0.731930363498678 NA NA prediction 0.414829578033038 Functional Gain - POMT1 ENSG00000130714 CDS Human protein_coding chr9:134385176 chr9:134385175 synonymous SNV . 0 20 hm7G_associated_SNPs_30916 0 0 1 1 2 POMT1 chr9:134385130 3'AG 134385130 Downstream 46bp 28332 chr9 134385175 134385175 1 + C T UCEC 134385176 + 134385156 134385196 41 GGCTAACACTGACAGGGGTCGCTTGTTCCTGTGCAGTGGGG GGCTAACACTGACAGGGGTTGCTTGTTCCTGTGCAGTGGGG < 41bp 0.524515574482159 0.731930363498678 NA NA prediction 0.414829578033038 Functional Gain - POMT1 ENSG00000130714 CDS Human protein_coding chr9:134385176 chr9:134385175 synonymous SNV . 0 20 hm7G_associated_SNPs_30916 0 0 1 1 2 POMT1 chr9:134385195 5'GT 134385195 Upstream 21bp 28333 chr15 91447530 91447530 1 + C T COAD 91447531 + 91447511 91447551 41 TGCTGGACCGAGTGCAACACGATCCCACCCGACACCAGAAT TGCTGGACCGAGTGCAACATGATCCCACCCGACACCAGAAT < 41bp 0.526120636215102 0.73353286464541 NA NA prediction 0.414824456860617 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91447531 chr15:91447530 synonymous SNV . 0 20 hm7G_associated_SNPs_30917 0 0 1 0 1 MAN2A2 chr15:91447569 5'GT 91447569 Upstream 40bp 28334 chr11 124747869 124747869 1 + G A BLCA 124747870 + 124747850 124747890 41 TATCTAGCTCAGACGGCCAGGGGCACGGCCGCCCCTGGCGA TATCTAGCTCAGACGGCCAAGGGCACGGCCGCCCCTGGCGA < 41bp 0.479327432575317 0.707411221605744 NA NA prediction 0.414822443211489 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124747870 chr11:124747869 nonsynonymous SNV 0.131 0 20 hm7G_associated_SNPs_30920 0 0 0 0 1 ROBO3 chr11:124747833 3'AG 124747833 Downstream 37bp 28335 chr17 2909299 2909299 1 + C T LGG 2909300 + 2909280 2909320 41 AGCTCACCAATGCCGAGAACGCCTGCTGCAAGTCGGACAAG AGCTCACCAATGCCGAGAATGCCTGCTGCAAGTCGGACAAG < 41bp 0.529611465274737 0.737021590263006 NA NA prediction 0.414820249976537 Functional Gain - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2909300 chr17:2909299 synonymous SNV . 0 20 hm7G_associated_SNPs_30922 0 0 1 0 2 RAP1GAP2 chr17:2909249 3'AG 2909249 Downstream 51bp 28336 chr17 2909299 2909299 1 + C T LGG 2909300 + 2909280 2909320 41 AGCTCACCAATGCCGAGAACGCCTGCTGCAAGTCGGACAAG AGCTCACCAATGCCGAGAATGCCTGCTGCAAGTCGGACAAG < 41bp 0.529611465274737 0.737021590263006 NA NA prediction 0.414820249976537 Functional Gain - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2909300 chr17:2909299 synonymous SNV . 0 20 hm7G_associated_SNPs_30922 0 0 1 0 2 RAP1GAP2 chr17:2909335 5'GT 2909335 Upstream 37bp 28337 chr1 12248883 12248883 1 + G A UCEC 12248884 + 12248864 12248904 41 ACCCTACGCCCCGGAGCCCGGGAGCACATGCCGGCTCAGAG ACCCTACGCCCCGGAGCCCAGGAGCACATGCCGGCTCAGAG < 41bp 0.484339373027407 0.707407873685955 NA NA prediction 0.414815747371911 Functional Gain - TNFRSF1B ENSG00000028137 CDS Human protein_coding chr1:12248884 chr1:12248883 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_30924 0 0 1 0 2 TNFRSF1B chr1:12248853 3'AG 12248853 Downstream 31bp 28338 chr1 12248883 12248883 1 + G A UCEC 12248884 + 12248864 12248904 41 ACCCTACGCCCCGGAGCCCGGGAGCACATGCCGGCTCAGAG ACCCTACGCCCCGGAGCCCAGGAGCACATGCCGGCTCAGAG < 41bp 0.484339373027407 0.707407873685955 NA NA prediction 0.414815747371911 Functional Gain - TNFRSF1B ENSG00000028137 CDS Human protein_coding chr1:12248884 chr1:12248883 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_30924 0 0 1 0 2 TNFRSF1B chr1:12248952 5'GT 12248952 Upstream 70bp 28339 chr19 8491669 8491669 1 + G A UCEC 8491670 + 8491650 8491690 41 GAGTTTGCAGTGGAGAAACGGCCTCGACCCCTCACAGAGGT GAGTTTGCAGTGGAGAAACAGCCTCGACCCCTCACAGAGGT < 41bp 0.524396002544178 0.731802799523598 NA NA prediction 0.414813593958839 Functional Gain - MARCH2 ENSG00000099785 CDS Human protein_coding chr19:8491670 chr19:8491669 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_30925 0 0 0 0 1 MARCH2 chr19:8491688 5'GT 8491688 Upstream 20bp 28340 chr20 5897512 5897512 1 + C T SKCM 5897513 + 5897493 5897533 41 GTCCTCTCAAATGCCTTGTCGAAGTCCAGCGCTCCACCCAT GTCCTCTCAAATGCCTTGTTGAAGTCCAGCGCTCCACCCAT < 41bp 0.514674198872153 0.722080842606975 NA NA prediction 0.414813287469643 Functional Gain - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897513 chr20:5897512 nonsynonymous SNV 0.769 0 20 hm7G_associated_SNPs_30926 0 0 0 0 3 CHGB chr20:5897472 3'AG 5897472 Downstream 41bp 28341 chr20 5897512 5897512 1 + C T SKCM 5897513 + 5897493 5897533 41 GTCCTCTCAAATGCCTTGTCGAAGTCCAGCGCTCCACCCAT GTCCTCTCAAATGCCTTGTTGAAGTCCAGCGCTCCACCCAT < 41bp 0.514674198872153 0.722080842606975 NA NA prediction 0.414813287469643 Functional Gain - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897513 chr20:5897512 nonsynonymous SNV 0.769 0 20 hm7G_associated_SNPs_30926 0 0 0 0 3 CHGB chr20:5897552 5'GT 5897552 Upstream 41bp 28342 chr20 5897512 5897512 1 + C T SKCM 5897513 + 5897493 5897533 41 GTCCTCTCAAATGCCTTGTCGAAGTCCAGCGCTCCACCCAT GTCCTCTCAAATGCCTTGTTGAAGTCCAGCGCTCCACCCAT < 41bp 0.514674198872153 0.722080842606975 NA NA prediction 0.414813287469643 Functional Gain - CHGB ENSG00000089199 CDS Human protein_coding chr20:5897513 chr20:5897512 nonsynonymous SNV 0.769 0 20 hm7G_associated_SNPs_30926 0 0 0 0 3 CHGB chr20:5897565 5'GT 5897565 Upstream 54bp 28343 chr1 154241262 154241262 1 + C T UCEC 154241263 + 154241243 154241283 41 AGAAACAAGGTTTTCATTCCGGTACTCCTGCTGCTTCCTTC AGAAACAAGGTTTTCATTCTGGTACTCCTGCTGCTTCCTTC < 41bp 0.520265136783435 0.72766905030547 NA NA prediction 0.41480782704407 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154241263 chr1:154241262 synonymous SNV . 0 20 hm7G_associated_SNPs_30927 0 0 1 0 2 UBAP2L chr1:154241233 3'AG 154241233 Downstream 30bp 28344 chr1 154241262 154241262 1 + C T UCEC 154241263 + 154241243 154241283 41 AGAAACAAGGTTTTCATTCCGGTACTCCTGCTGCTTCCTTC AGAAACAAGGTTTTCATTCTGGTACTCCTGCTGCTTCCTTC < 41bp 0.520265136783435 0.72766905030547 NA NA prediction 0.41480782704407 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154241263 chr1:154241262 synonymous SNV . 0 20 hm7G_associated_SNPs_30927 0 0 1 0 2 UBAP2L chr1:154241236 3'AG 154241236 Downstream 27bp 28345 chr15 84237405 84237405 1 + C T UCEC 84237406 + 84237386 84237426 41 TGAAATACGGGAAGGAGCTCGGGGAAGACTCCACCTTTGGT TGAAATACGGGAAGGAGCTTGGGGAAGACTCCACCTTTGGT < 41bp 0.499514426610797 0.707403664228127 NA NA prediction 0.414807328456254 Functional Gain - SH3GL3 ENSG00000140600 CDS Human protein_coding chr15:84237406 chr15:84237405 synonymous SNV . 0 20 hm7G_associated_SNPs_30928 0 0 1 0 1 SH3GL3 chr15:84237424 5'GT 84237424 Upstream 20bp 28346 chr17 26822696 26822696 1 + G A SKCM 26822697 + 26822677 26822717 41 CGGGCCTGTCAGAGTGGCTGGGAAACAAGCTGACCCCACTG CGGGCCTGTCAGAGTGGCTAGGAAACAAGCTGACCCCACTG < 41bp 0.575542563879709 0.782945471762939 NA NA prediction 0.414805815766459 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26822697 chr17:26822696 synonymous SNV . 0 20 hm7G_associated_SNPs_30929 0 0 0 0 1 SLC13A2 chr17:26822673 3'AG 26822673 Downstream 24bp 28347 chr11 134237185 134237185 1 + C T UCEC 134237186 + 134237166 134237206 41 ATGGTGATGGAGTACTGGACGGGGTGGTTTGACTCGTGGGG ATGGTGATGGAGTACTGGATGGGGTGGTTTGACTCGTGGGG < 41bp 0.52206721931936 0.729469679424106 NA NA prediction 0.414804920209491 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134237186 chr11:134237185 nonsynonymous SNV 0.986 5 20 hm7G_associated_SNPs_30930 0 0 1 0 2 GLB1L2 chr11:134237151 3'AG 134237151 Downstream 35bp 28348 chr11 134237185 134237185 1 + C T UCEC 134237186 + 134237166 134237206 41 ATGGTGATGGAGTACTGGACGGGGTGGTTTGACTCGTGGGG ATGGTGATGGAGTACTGGATGGGGTGGTTTGACTCGTGGGG < 41bp 0.52206721931936 0.729469679424106 NA NA prediction 0.414804920209491 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134237186 chr11:134237185 nonsynonymous SNV 0.986 5 20 hm7G_associated_SNPs_30930 0 0 1 0 2 GLB1L2 chr11:134237235 5'GT 134237235 Upstream 51bp 28349 chr6 74190469 74190469 1 + C T ESCA 74190470 + 74190450 74190490 41 GGAGACTCATTTGGTTCAACGACTCTTCTTTGCTGGACAGA GGAGACTCATTTGGTTCAATGACTCTTCTTTGCTGGACAGA < 41bp 0.511808978439065 0.719211325989555 NA NA prediction 0.414804695100979 Functional Gain - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74190470 chr6:74190469 stopgain 0.748 1 20 hm7G_associated_SNPs_30931 0 0 1 0 1 MTO1 chr6:74190398 3'AG 74190398 Downstream 72bp 28350 chr10 71695138 71695138 1 + C T COAD 71695139 + 71695119 71695159 41 CAGGGCCAGAGGGGCCTCCCGGACCTCCGGTAAGTTTGGAG CAGGGCCAGAGGGGCCTCCTGGACCTCCGGTAAGTTTGGAG < 41bp 0.506131425338509 0.713529919753364 NA NA prediction 0.414796988829711 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695139 chr10:71695138 synonymous SNV . 0 20 hm7G_associated_SNPs_30932 0 0 0 0 2 COL13A1 chr10:71695106 3'AG 71695106 Downstream 33bp 28351 chr10 71695138 71695138 1 + C T COAD 71695139 + 71695119 71695159 41 CAGGGCCAGAGGGGCCTCCCGGACCTCCGGTAAGTTTGGAG CAGGGCCAGAGGGGCCTCCTGGACCTCCGGTAAGTTTGGAG < 41bp 0.506131425338509 0.713529919753364 NA NA prediction 0.414796988829711 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71695139 chr10:71695138 synonymous SNV . 0 20 hm7G_associated_SNPs_30932 0 0 0 0 2 COL13A1 chr10:71695147 5'GT 71695147 Upstream 10bp 28352 chr8 24349489 24349489 1 + C T SKCM 24349490 + 24349470 24349510 41 GAGATGTGCACTGGCCACTCGCCTGCCTGTCCTAAGGACCA GAGATGTGCACTGGCCACTTGCCTGCCTGTCCTAAGGACCA < 41bp 0.507348116707347 0.714745378617426 NA NA prediction 0.414794523820158 Functional Gain - ADAM7 ENSG00000069206 CDS Human protein_coding chr8:24349490 chr8:24349489 nonsynonymous SNV 0.412 3 20 hm7G_associated_SNPs_30933 0 0 0 0 1 ADAM7 chr8:24349416 3'AG 24349416 Downstream 74bp 28353 chr8 36671820 36671820 1 + C T ESCA 36671821 + 36671801 36671841 41 TCATGGCAACAACGTCAACCGTTGGATTTGGAGATGTGGTA TCATGGCAACAACGTCAACTGTTGGATTTGGAGATGTGGTA < 41bp 0.506229914652976 0.713626919335908 NA NA prediction 0.414794009365865 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36671821 chr8:36671820 synonymous SNV . 0 20 hm7G_associated_SNPs_30934 0 0 0 0 2 KCNU1 chr8:36671725 3'AG 36671725 Downstream 96bp 28354 chr8 36671820 36671820 1 + C T ESCA 36671821 + 36671801 36671841 41 TCATGGCAACAACGTCAACCGTTGGATTTGGAGATGTGGTA TCATGGCAACAACGTCAACTGTTGGATTTGGAGATGTGGTA < 41bp 0.506229914652976 0.713626919335908 NA NA prediction 0.414794009365865 Functional Gain - KCNU1 ENSG00000215262 CDS Human protein_coding chr8:36671821 chr8:36671820 synonymous SNV . 0 20 hm7G_associated_SNPs_30934 0 0 0 0 2 KCNU1 chr8:36671895 5'GT 36671895 Upstream 76bp 28355 chr2 98994192 98994192 1 + G A STAD 98994193 + 98994173 98994213 41 CATCGTCAGTGCTGCAGCCGGGGATCGCCATGGAGACCAGA CATCGTCAGTGCTGCAGCCAGGGATCGCCATGGAGACCAGA < 41bp 0.571672092243949 0.779066873667283 NA NA prediction 0.414789562846668 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98994193 chr2:98994192 synonymous SNV . 0 20 hm7G_associated_SNPs_30935 0 0 0 0 2 CNGA3 chr2:98994150 3'AG 98994150 Downstream 43bp 28356 chr2 98994192 98994192 1 + G A STAD 98994193 + 98994173 98994213 41 CATCGTCAGTGCTGCAGCCGGGGATCGCCATGGAGACCAGA CATCGTCAGTGCTGCAGCCAGGGATCGCCATGGAGACCAGA < 41bp 0.571672092243949 0.779066873667283 NA NA prediction 0.414789562846668 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98994193 chr2:98994192 synonymous SNV . 0 20 hm7G_associated_SNPs_30935 0 0 0 0 2 CNGA3 chr2:98994263 5'GT 98994263 Upstream 72bp 28357 chrX 49142385 49142385 1 + G A SKCM 49142386 + 49142366 49142406 41 CTTTTACAGAGGTCCTCCAGGCACCGGCCATCAGGATTCCC CTTTTACAGAGGTCCTCCAAGCACCGGCCATCAGGATTCCC < 41bp 0.56058058987677 0.767975259637339 NA NA prediction 0.414789339521138 Functional Gain - PPP1R3F ENSG00000049769 CDS Human protein_coding chrX:49142386 chrX:49142385 synonymous SNV . 0 20 hm7G_associated_SNPs_30936 0 0 0 0 1 PPP1R3F chrX:49142296 3'AG 49142296 Downstream 90bp 28358 chr4 69327553 69327553 1 + G T COAD 69327554 + 69327534 69327574 41 CTTAGGCCAGATGTGGTGAGGGCTAGGAAAAGAGTTTGTTG CTTAGGCCAGATGTGGTGATGGCTAGGAAAAGAGTTTGTTG < 41bp 0.689171200954121 0.896565261917996 NA NA prediction 0.414788121927751 Functional Gain - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69327554 chr4:69327553 nonsynonymous SNV 0.077 1 20 hm7G_associated_SNPs_30937 0 0 0 0 1 TMPRSS11E chr4:69327539 3'AG 69327539 Downstream 15bp 28359 chr17 80529626 80529626 1 + C T UCEC 80529627 + 80529607 80529647 41 CAAAGCCGCCTTACTCCTACGCGCAGCTGATAGTTCAGGCG CAAAGCCGCCTTACTCCTATGCGCAGCTGATAGTTCAGGCG < 41bp 0.495450537605646 0.707392541041771 NA NA prediction 0.414785082083541 Functional Gain - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80529627 chr17:80529626 synonymous SNV . 0 20 hm7G_associated_SNPs_30938 0 0 1 0 1 FOXK2 chr17:80529600 3'AG 80529600 Downstream 27bp 28360 chr5 176520430 176520430 1 + C T STAD 176520431 + 176520411 176520451 41 CCCTGGAGTCAGGCTCTTCCGGCAAGTCAAGCTCATCCCTG CCCTGGAGTCAGGCTCTTCTGGCAAGTCAAGCTCATCCCTG < 41bp 0.491431776746627 0.707391636004258 NA NA prediction 0.414783272008516 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520431 chr5:176520430 nonsynonymous SNV 0.279 0 20 hm7G_associated_SNPs_30939 0 0 1 0 2 FGFR4 chr5:176520407 3'AG 176520407 Downstream 24bp 28361 chr5 176520430 176520430 1 + C T STAD 176520431 + 176520411 176520451 41 CCCTGGAGTCAGGCTCTTCCGGCAAGTCAAGCTCATCCCTG CCCTGGAGTCAGGCTCTTCTGGCAAGTCAAGCTCATCCCTG < 41bp 0.491431776746627 0.707391636004258 NA NA prediction 0.414783272008516 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520431 chr5:176520430 nonsynonymous SNV 0.279 0 20 hm7G_associated_SNPs_30939 0 0 1 0 2 FGFR4 chr5:176520502 5'GT 176520502 Upstream 73bp 28362 chr4 110908923 110908923 1 + G T UCEC 110908924 + 110908904 110908944 41 AGATGACTGTGCTCCTGTGGGATGCAGCATGTATGCTCGGT AGATGACTGTGCTCCTGTGTGATGCAGCATGTATGCTCGGT < 41bp 0.371726244806528 0.70739108610276 NA NA prediction 0.414782172205521 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110908924 chr4:110908923 stopgain 0.016 0 20 hm7G_associated_SNPs_30940 0 0 0 0 2 EGF chr4:110908900 3'AG 110908900 Downstream 24bp 28363 chr4 110908923 110908923 1 + G T UCEC 110908924 + 110908904 110908944 41 AGATGACTGTGCTCCTGTGGGATGCAGCATGTATGCTCGGT AGATGACTGTGCTCCTGTGTGATGCAGCATGTATGCTCGGT < 41bp 0.371726244806528 0.70739108610276 NA NA prediction 0.414782172205521 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110908924 chr4:110908923 stopgain 0.016 0 20 hm7G_associated_SNPs_30940 0 0 0 0 2 EGF chr4:110909016 5'GT 110909016 Upstream 94bp 28364 chr1 55158176 55158176 1 + G A rs537957753 55158177 + 55158157 55158197 41 GTTTCTGGAGGACCAGGGTGGCTGGGAGCTCATGGAGCAGG GTTTCTGGAGGACCAGGGTAGCTGGGAGCTCATGGAGCAGG < 41bp 0.551331630360556 0.758721308043113 NA NA prediction 0.414779355365114 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55158177 chr1:55158176 nonsynonymous SNV 0.970 2 20 hm7G_associated_SNPs_30942 0 0 0 0 2 MROH7 chr1:55158097 3'AG 55158097 Downstream 80bp 28365 chr1 55158176 55158176 1 + G A rs537957753 55158177 + 55158157 55158197 41 GTTTCTGGAGGACCAGGGTGGCTGGGAGCTCATGGAGCAGG GTTTCTGGAGGACCAGGGTAGCTGGGAGCTCATGGAGCAGG < 41bp 0.551331630360556 0.758721308043113 NA NA prediction 0.414779355365114 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55158177 chr1:55158176 nonsynonymous SNV 0.970 2 20 hm7G_associated_SNPs_30942 0 0 0 0 2 MROH7 chr1:55158234 5'GT 55158234 Upstream 59bp 28366 chr7 139225123 139225123 1 + G A SKCM 139225124 + 139225104 139225144 41 GGAGGACTGGCTGCTCTACGGAAGGAAGTGCTACTTCTTTT GGAGGACTGGCTGCTCTACAGAAGGAAGTGCTACTTCTTTT < 41bp 0.515182665514416 0.722571176396418 NA NA prediction 0.414777021764005 Functional Gain - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139225124 chr7:139225123 nonsynonymous SNV 0.955 0 20 hm7G_associated_SNPs_30944 0 0 0 0 1 CLEC2L chr7:139225067 3'AG 139225067 Downstream 57bp 28367 chr7 65553846 65553846 1 + C T UCEC 65553847 + 65553827 65553867 41 CCCATCTCAGCAGGATGGCCGAGGACCTCATCCTCTACTGC CCCATCTCAGCAGGATGGCTGAGGACCTCATCCTCTACTGC < 41bp 0.508760991533622 0.716149037976876 NA NA prediction 0.414776092886507 Functional Gain - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65553847 chr7:65553846 synonymous SNV . 0 20 hm7G_associated_SNPs_30945 0 0 1 0 2 ASL chr7:65553794 3'AG 65553794 Downstream 53bp 28368 chr7 65553846 65553846 1 + C T UCEC 65553847 + 65553827 65553867 41 CCCATCTCAGCAGGATGGCCGAGGACCTCATCCTCTACTGC CCCATCTCAGCAGGATGGCTGAGGACCTCATCCTCTACTGC < 41bp 0.508760991533622 0.716149037976876 NA NA prediction 0.414776092886507 Functional Gain - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65553847 chr7:65553846 synonymous SNV . 0 20 hm7G_associated_SNPs_30945 0 0 1 0 2 ASL chr7:65553908 5'GT 65553908 Upstream 63bp 28369 chr15 66838952 66838952 1 + G T LUAD 66838953 + 66838933 66838973 41 TTCGGAATTAACACTAAACGGTAGCCTGGAAGAAAGGATAT TTCGGAATTAACACTAAACTGTAGCCTGGAAGAAAGGATAT < 41bp 0.684130574948988 0.891518253135798 NA NA prediction 0.414775356373619 Functional Gain - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66838953 chr15:66838952 nonsynonymous SNV 0.664 0 20 hm7G_associated_SNPs_30946 0 0 1 0 1 ZWILCH chr15:66838929 3'AG 66838929 Downstream 24bp 28370 chr16 29982835 29982835 1 + G A UCEC 29982836 + 29982816 29982856 41 ATGTGCTTCCACCCGCGCCGGGAGTCCCACTGGTCTAGAAC ATGTGCTTCCACCCGCGCCAGGAGTCCCACTGGTCTAGAAC < 41bp 0.48775596521979 0.707383778207323 NA NA prediction 0.414767556414646 Functional Gain - TMEM219 ENSG00000149932 CDS Human protein_coding chr16:29982836 chr16:29982835 nonsynonymous SNV 0.854 0 20 hm7G_associated_SNPs_30948 0 0 1 0 1 TMEM219 chr16:29982899 5'GT 29982899 Upstream 65bp 28371 chr21 41151175 41151175 1 + C T SKCM 41151176 + 41151156 41151196 41 CTGCTGCTGCTGCCGCCGTCGTTGTTGTGGCTGCAACTGCT CTGCTGCTGCTGCCGCCGTTGTTGTTGTGGCTGCAACTGCT < 41bp 0.50546768980113 0.712848312201574 NA NA prediction 0.414761244800888 Functional Gain - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41151176 chr21:41151175 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_30949 0 0 0 0 1 IGSF5 chr21:41151232 5'GT 41151232 Upstream 58bp 28372 chr2 98341705 98341705 1 + G A UCEC 98341706 + 98341686 98341726 41 CTCTGGGGCGCAGACCGACGGCAAGTTCCTGTATGTGGGGC CTCTGGGGCGCAGACCGACAGCAAGTTCCTGTATGTGGGGC < 41bp 0.569568961878748 0.776949582903745 NA NA prediction 0.414761242049996 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98341706 chr2:98341705 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_30950 0 0 0 0 1 ZAP70 chr2:98341715 5'GT 98341715 Upstream 11bp 28373 chr6 43171285 43171285 1 + G A COAD 43171286 + 43171266 43171306 41 CGGGCACAAGCCTGGAGCCGGGACATAGCAGAGGACCACCG CGGGCACAAGCCTGGAGCCAGGACATAGCAGAGGACCACCG < 41bp 0.521152754354234 0.728530037078681 NA NA prediction 0.414754565448895 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43171286 chr6:43171285 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_30951 0 0 0 0 1 CUL9 chr6:43171330 5'GT 43171330 Upstream 46bp 28374 chr17 15641629 15641629 1 + G T LUSC 15641630 + 15641610 15641650 41 ACAAAGTCATTCCCCTGGCGGTACGGGGCCGGGCGTGGTCA ACAAAGTCATTCCCCTGGCTGTACGGGGCCGGGCGTGGTCA < 41bp 0.698048113693358 0.90542409549334 NA NA prediction 0.414751963599964 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641630 chr17:15641629 synonymous SNV . 0 20 hm7G_associated_SNPs_30953 0 0 0 0 2 TBC1D26 chr17:15641594 3'AG 15641594 Downstream 36bp 28375 chr17 15641629 15641629 1 + G T LUSC 15641630 + 15641610 15641650 41 ACAAAGTCATTCCCCTGGCGGTACGGGGCCGGGCGTGGTCA ACAAAGTCATTCCCCTGGCTGTACGGGGCCGGGCGTGGTCA < 41bp 0.698048113693358 0.90542409549334 NA NA prediction 0.414751963599964 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641630 chr17:15641629 synonymous SNV . 0 20 hm7G_associated_SNPs_30953 0 0 0 0 2 TBC1D26 chr17:15641701 5'GT 15641701 Upstream 73bp 28376 chr7 44741180 44741180 1 + C T SKCM 44741181 + 44741161 44741201 41 AATCCCTGTTGCGCCACCCCGAGGCCAGATCCAGCTTTGAT AATCCCTGTTGCGCCACCCTGAGGCCAGATCCAGCTTTGAT < 41bp 0.529442693324836 0.736818449071998 NA NA prediction 0.414751511494324 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44741181 chr7:44741180 synonymous SNV . 0 20 hm7G_associated_SNPs_30954 0 0 1 0 2 OGDH chr7:44741142 3'AG 44741142 Downstream 39bp 28377 chr7 44741180 44741180 1 + C T SKCM 44741181 + 44741161 44741201 41 AATCCCTGTTGCGCCACCCCGAGGCCAGATCCAGCTTTGAT AATCCCTGTTGCGCCACCCTGAGGCCAGATCCAGCTTTGAT < 41bp 0.529442693324836 0.736818449071998 NA NA prediction 0.414751511494324 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44741181 chr7:44741180 synonymous SNV . 0 20 hm7G_associated_SNPs_30954 0 0 1 0 2 OGDH chr7:44741214 5'GT 44741214 Upstream 35bp 28378 chr18 19418371 19418371 1 + G T ESCA 19418372 + 19418352 19418392 41 TACCAAGACCATGGATTGTGGATGAGAAGAAAGATGATGGT TACCAAGACCATGGATTGTTGATGAGAAGAAAGATGATGGT < 41bp 0.686287757033028 0.893661412015408 NA NA prediction 0.414747309964761 Functional Gain - MIB1 ENSG00000101752 CDS Human protein_coding chr18:19418372 chr18:19418371 synonymous SNV . 0 20 hm7G_associated_SNPs_30955 0 0 1 0 2 MIB1 chr18:19418326 3'AG 19418326 Downstream 46bp 28379 chr18 19418371 19418371 1 + G T ESCA 19418372 + 19418352 19418392 41 TACCAAGACCATGGATTGTGGATGAGAAGAAAGATGATGGT TACCAAGACCATGGATTGTTGATGAGAAGAAAGATGATGGT < 41bp 0.686287757033028 0.893661412015408 NA NA prediction 0.414747309964761 Functional Gain - MIB1 ENSG00000101752 CDS Human protein_coding chr18:19418372 chr18:19418371 synonymous SNV . 0 20 hm7G_associated_SNPs_30955 0 0 1 0 2 MIB1 chr18:19418458 5'GT 19418458 Upstream 88bp 28380 chr18 48248378 48248378 1 + C T UCEC 48248379 + 48248359 48248399 41 TCCGGGAGGAAGACAAGGACGAGCTGCTCAGGGTGATGCCT TCCGGGAGGAAGACAAGGATGAGCTGCTCAGGGTGATGCCT < 41bp 0.52828540858118 0.735657681748906 NA NA prediction 0.414744546335453 Functional Gain - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48248379 chr18:48248378 synonymous SNV . 0 20 hm7G_associated_SNPs_30956 0 0 0 0 2 MAPK4 chr18:48248308 3'AG 48248308 Downstream 71bp 28381 chr18 48248378 48248378 1 + C T UCEC 48248379 + 48248359 48248399 41 TCCGGGAGGAAGACAAGGACGAGCTGCTCAGGGTGATGCCT TCCGGGAGGAAGACAAGGATGAGCTGCTCAGGGTGATGCCT < 41bp 0.52828540858118 0.735657681748906 NA NA prediction 0.414744546335453 Functional Gain - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48248379 chr18:48248378 synonymous SNV . 0 20 hm7G_associated_SNPs_30956 0 0 0 0 2 MAPK4 chr18:48248469 5'GT 48248469 Upstream 92bp 28382 chr16 30768183 30768183 1 + G A UCEC 30768184 + 30768164 30768204 41 CTAAGCACCCATCGTGTACGGCCACTGACCAAGAATGCACT CTAAGCACCCATCGTGTACAGCCACTGACCAAGAATGCACT < 41bp 0.488264253895008 0.707372209456904 NA NA prediction 0.414744418913808 Functional Gain - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30768184 chr16:30768183 nonsynonymous SNV 0.876 2 20 hm7G_associated_SNPs_30957 0 0 1 0 2 PHKG2 chr16:30768125 3'AG 30768125 Downstream 59bp 28383 chr16 30768183 30768183 1 + G A UCEC 30768184 + 30768164 30768204 41 CTAAGCACCCATCGTGTACGGCCACTGACCAAGAATGCACT CTAAGCACCCATCGTGTACAGCCACTGACCAAGAATGCACT < 41bp 0.488264253895008 0.707372209456904 NA NA prediction 0.414744418913808 Functional Gain - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30768184 chr16:30768183 nonsynonymous SNV 0.876 2 20 hm7G_associated_SNPs_30957 0 0 1 0 2 PHKG2 chr16:30768280 5'GT 30768280 Upstream 98bp 28384 chr16 90028237 90028237 1 + C T BLCA 90028238 + 90028218 90028258 41 CCTGGCTGTGATCCCTGCACGCGTTGTACACAACTGGGACT CCTGGCTGTGATCCCTGCATGCGTTGTACACAACTGGGACT < 41bp 0.508912315592159 0.716284411513837 NA NA prediction 0.414744191843356 Functional Gain - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028238 chr16:90028237 nonsynonymous SNV 0.106 4 20 hm7G_associated_SNPs_30958 0 0 1 0 2 DEF8 chr16:90028145 3'AG 90028145 Downstream 93bp 28385 chr16 90028237 90028237 1 + C T BLCA 90028238 + 90028218 90028258 41 CCTGGCTGTGATCCCTGCACGCGTTGTACACAACTGGGACT CCTGGCTGTGATCCCTGCATGCGTTGTACACAACTGGGACT < 41bp 0.508912315592159 0.716284411513837 NA NA prediction 0.414744191843356 Functional Gain - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90028238 chr16:90028237 nonsynonymous SNV 0.106 4 20 hm7G_associated_SNPs_30958 0 0 1 0 2 DEF8 chr16:90028272 5'GT 90028272 Upstream 36bp 28386 chr5 156817538 156817538 1 + C T SKCM 156817539 + 156817519 156817559 41 CTGCTCCCAGGCAGTGTTTCGGCGATGGCTTGAACTGGGCT CTGCTCCCAGGCAGTGTTTTGGCGATGGCTTGAACTGGGCT < 41bp 0.527347015520896 0.734713846247155 NA NA prediction 0.414733661452519 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156817539 chr5:156817538 synonymous SNV . 0 20 hm7G_associated_SNPs_30959 0 0 0 0 1 CYFIP2 chr5:156817529 3'AG 156817529 Downstream 10bp 28387 chr17 72938012 72938012 1 + C T CESC 72938013 + 72937993 72938033 41 CAGGTTCCCTAGTGCTCTTCGGCAGCTGCACCTTCTGCCTC CAGGTTCCCTAGTGCTCTTTGGCAGCTGCACCTTCTGCCTC < 41bp 0.509490031412011 0.716855749730244 NA NA prediction 0.414731436636466 Functional Gain - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72938013 chr17:72938012 synonymous SNV . 0 20 hm7G_associated_SNPs_30960 0 0 0 0 1 OTOP3 chr17:72937996 3'AG 72937996 Downstream 17bp 28388 chr9 136405775 136405775 1 + C T CESC 136405776 + 136405756 136405796 41 TGCACTGTACCACCGTGGACGGCCAGCGGCAGCTCATGGTC TGCACTGTACCACCGTGGATGGCCAGCGGCAGCTCATGGTC < 41bp 0.500736981462503 0.708102424173309 NA NA prediction 0.414730885421613 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405776 chr9:136405775 synonymous SNV . 0 20 hm7G_associated_SNPs_30961 0 0 0 0 2 ADAMTSL2 chr9:136405720 3'AG 136405720 Downstream 56bp 28389 chr9 136405775 136405775 1 + C T CESC 136405776 + 136405756 136405796 41 TGCACTGTACCACCGTGGACGGCCAGCGGCAGCTCATGGTC TGCACTGTACCACCGTGGATGGCCAGCGGCAGCTCATGGTC < 41bp 0.500736981462503 0.708102424173309 NA NA prediction 0.414730885421613 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405776 chr9:136405775 synonymous SNV . 0 20 hm7G_associated_SNPs_30961 0 0 0 0 2 ADAMTSL2 chr9:136405865 5'GT 136405865 Upstream 91bp 28390 chr4 88048186 88048186 1 + C T UCEC 88048187 + 88048167 88048207 41 TTTTTTTGAAGGGTTCTTCCGGAGATACTGCAAATCCTTTT TTTTTTTGAAGGGTTCTTCTGGAGATACTGCAAATCCTTTT < 41bp 0.51319183996294 0.720553714593262 NA NA prediction 0.414723749260642 Functional Gain - AFF1 ENSG00000172493 CDS Human protein_coding chr4:88048187 chr4:88048186 synonymous SNV . 0 20 hm7G_associated_SNPs_30963 0 0 1 0 1 AFF1 chr4:88048269 5'GT 88048269 Upstream 84bp 28391 chr3 38349184 38349184 1 + G A HNSC 38349185 + 38349165 38349205 41 CATCTCGCAGTCAGTGGTGGGCTACGCCATCAGCAGCATTT CATCTCGCAGTCAGTGGTGAGCTACGCCATCAGCAGCATTT < 41bp 0.49360797131513 0.707361597058599 NA NA prediction 0.414723194117197 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38349185 chr3:38349184 nonsynonymous SNV 0.005 4 20 hm7G_associated_SNPs_30964 0 0 0 0 1 SLC22A14 chr3:38349211 5'GT 38349211 Upstream 28bp 28392 chr19 47646764 47646764 1 + C T BLCA 47646765 + 47646745 47646785 41 TTACAGGCTGCGGGCCTCTCGGGTGCTTCTTGTCGGCTTGA TTACAGGCTGCGGGCCTCTTGGGTGCTTCTTGTCGGCTTGA < 41bp 0.500298329212684 0.70765906076384 NA NA prediction 0.414721463102313 Functional Gain - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646765 chr19:47646764 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30965 0 0 1 0 2 SAE1 chr19:47646751 3'AG 47646751 Downstream 14bp 28393 chr19 47646764 47646764 1 + C T BLCA 47646765 + 47646745 47646785 41 TTACAGGCTGCGGGCCTCTCGGGTGCTTCTTGTCGGCTTGA TTACAGGCTGCGGGCCTCTTGGGTGCTTCTTGTCGGCTTGA < 41bp 0.500298329212684 0.70765906076384 NA NA prediction 0.414721463102313 Functional Gain - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47646765 chr19:47646764 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_30965 0 0 1 0 2 SAE1 chr19:47646862 5'GT 47646862 Upstream 99bp 28394 chr7 99817764 99817764 1 + G T UCEC 99817765 + 99817745 99817785 41 GAGGTGTGGGTTCAAGTTCGGATGGAGGCCACCGAGCTCTC GAGGTGTGGGTTCAAGTTCTGATGGAGGCCACCGAGCTCTC < 41bp 0.695690090750281 0.903050801978996 NA NA prediction 0.414721422457429 Functional Gain - PVRIG ENSG00000213413 CDS Human protein_coding chr7:99817765 chr7:99817764 nonsynonymous SNV 0.029 1 20 hm7G_associated_SNPs_30966 0 0 0 0 1 PVRIG chr7:99817737 3'AG 99817737 Downstream 28bp 28395 chr6 43111176 43111176 1 + C T COAD 43111177 + 43111157 43111197 41 AAGCCTGTGCCGGAGGAGTCGGAGGGCCCTGGCAGCCCTCC AAGCCTGTGCCGGAGGAGTTGGAGGGCCCTGGCAGCCCTCC < 41bp 0.528146999036982 0.735506819560153 NA NA prediction 0.414719641046343 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43111177 chr6:43111176 nonsynonymous SNV 0.846 0 20 hm7G_associated_SNPs_30967 0 0 1 0 2 PTK7 chr6:43111155 3'AG 43111155 Downstream 22bp 28396 chr6 43111176 43111176 1 + C T COAD 43111177 + 43111157 43111197 41 AAGCCTGTGCCGGAGGAGTCGGAGGGCCCTGGCAGCCCTCC AAGCCTGTGCCGGAGGAGTTGGAGGGCCCTGGCAGCCCTCC < 41bp 0.528146999036982 0.735506819560153 NA NA prediction 0.414719641046343 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43111177 chr6:43111176 nonsynonymous SNV 0.846 0 20 hm7G_associated_SNPs_30967 0 0 1 0 2 PTK7 chr6:43111160 3'AG 43111160 Downstream 17bp 28397 chr7 128586026 128586026 1 + G A UCEC 128586027 + 128586007 128586047 41 CTCATCTACGACGGGCCCCGGGACATGCCACCTCAGCCCTA CTCATCTACGACGGGCCCCAGGACATGCCACCTCAGCCCTA < 41bp 0.526607670279753 0.733966851154752 NA NA prediction 0.414718361749999 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128586027 chr7:128586026 nonsynonymous SNV 0.951 3 20 hm7G_associated_SNPs_30968 0 0 0 0 2 IRF5 chr7:128586060 5'GT 128586060 Upstream 35bp 28398 chr7 128586026 128586026 1 + G A UCEC 128586027 + 128586007 128586047 41 CTCATCTACGACGGGCCCCGGGACATGCCACCTCAGCCCTA CTCATCTACGACGGGCCCCAGGACATGCCACCTCAGCCCTA < 41bp 0.526607670279753 0.733966851154752 NA NA prediction 0.414718361749999 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128586027 chr7:128586026 nonsynonymous SNV 0.951 3 20 hm7G_associated_SNPs_30968 0 0 0 0 2 IRF5 chr7:128586088 5'GT 128586088 Upstream 63bp 28399 chr11 118982054 118982054 1 + C T GBM 118982055 + 118982035 118982075 41 GTTATTCCTACGGCAGCTTCGGGCATCTCACTTGGGAAATG GTTATTCCTACGGCAGCTTTGGGCATCTCACTTGGGAAATG < 41bp 0.529856903284513 0.737215327698956 NA NA prediction 0.414716848828885 Functional Gain - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118982055 chr11:118982054 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30969 0 0 1 0 2 C2CD2L chr11:118981973 3'AG 118981973 Downstream 82bp 28400 chr11 118982054 118982054 1 + C T GBM 118982055 + 118982035 118982075 41 GTTATTCCTACGGCAGCTTCGGGCATCTCACTTGGGAAATG GTTATTCCTACGGCAGCTTTGGGCATCTCACTTGGGAAATG < 41bp 0.529856903284513 0.737215327698956 NA NA prediction 0.414716848828885 Functional Gain - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118982055 chr11:118982054 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30969 0 0 1 0 2 C2CD2L chr11:118982084 5'GT 118982084 Upstream 31bp 28401 chr20 30486296 30486296 1 + G T COAD 30486297 + 30486277 30486317 41 GAGCAGAGAGCATCGATCCGGTTCAAGACCACCCTCATGAA GAGCAGAGAGCATCGATCCTGTTCAAGACCACCCTCATGAA < 41bp 0.37349058733774 0.707355870774925 NA NA prediction 0.41471174154985 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30486297 chr20:30486296 nonsynonymous SNV 0.935 2 20 hm7G_associated_SNPs_30970 0 0 0 0 2 TTLL9 chr20:30486276 3'AG 30486276 Downstream 21bp 28402 chr20 30486296 30486296 1 + G T COAD 30486297 + 30486277 30486317 41 GAGCAGAGAGCATCGATCCGGTTCAAGACCACCCTCATGAA GAGCAGAGAGCATCGATCCTGTTCAAGACCACCCTCATGAA < 41bp 0.37349058733774 0.707355870774925 NA NA prediction 0.41471174154985 Functional Gain - TTLL9 ENSG00000131044 CDS Human protein_coding chr20:30486297 chr20:30486296 nonsynonymous SNV 0.935 2 20 hm7G_associated_SNPs_30970 0 0 0 0 2 TTLL9 chr20:30486368 5'GT 30486368 Upstream 73bp 28403 chr3 151085954 151085954 1 + C T BRCA 151085955 + 151085935 151085975 41 TAGCTTGTGGGGATGCGGACGCCGAGCCTGGGGCGAGAATG TAGCTTGTGGGGATGCGGATGCCGAGCCTGGGGCGAGAATG < 41bp 0.494842419722995 0.707353688054784 NA NA prediction 0.414707376109567 Functional Gain - MED12L ENSG00000144893 CDS Human protein_coding chr3:151085955 chr3:151085954 synonymous SNV . 0 20 hm7G_associated_SNPs_30971 0 0 0 0 2 MED12L chr3:151085938 3'AG 151085938 Downstream 17bp 28404 chr3 151085954 151085954 1 + C T BRCA 151085955 + 151085935 151085975 41 TAGCTTGTGGGGATGCGGACGCCGAGCCTGGGGCGAGAATG TAGCTTGTGGGGATGCGGATGCCGAGCCTGGGGCGAGAATG < 41bp 0.494842419722995 0.707353688054784 NA NA prediction 0.414707376109567 Functional Gain - MED12L ENSG00000144893 CDS Human protein_coding chr3:151085955 chr3:151085954 synonymous SNV . 0 20 hm7G_associated_SNPs_30971 0 0 0 0 2 MED12L chr3:151086039 5'GT 151086039 Upstream 86bp 28405 chr17 40817816 40817816 1 + G A UCEC 40817817 + 40817797 40817837 41 GCTCCACTTCCTCATGACCGGCTACACCCCGCTCACTACAG GCTCCACTTCCTCATGACCAGCTACACCCCGCTCACTACAG < 41bp 0.554938883873087 0.76229253058606 NA NA prediction 0.414707293425946 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817817 chr17:40817816 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_30972 0 0 1 0 1 TUBG2 chr17:40817845 5'GT 40817845 Upstream 30bp 28406 chr15 22999494 22999494 1 + C T UCEC 22999495 + 22999475 22999515 41 ATGGGGTCATGCATGTGGACGAGTGTGTGGAGTTTCACAGA ATGGGGTCATGCATGTGGATGAGTGTGTGGAGTTTCACAGA < 41bp 0.502746023960766 0.710097932024906 NA NA prediction 0.41470381612828 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22999495 chr15:22999494 synonymous SNV . 0 20 hm7G_associated_SNPs_30973 0 0 1 0 1 CYFIP1 chr15:22999577 5'GT 22999577 Upstream 84bp 28407 chr1 205039043 205039043 1 + G A HNSC 205039044 + 205039024 205039064 41 ACTCACTGGCAGACCGCCCGGGTGCCTGGCGCCGATGCCCA ACTCACTGGCAGACCGCCCAGGTGCCTGGCGCCGATGCCCA < 41bp 0.569211219177353 0.776562812290858 NA NA prediction 0.41470318622701 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039044 chr1:205039043 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_30974 0 0 0 0 1 CNTN2 chr1:205038955 3'AG 205038955 Downstream 89bp 28408 chr11 117152658 117152658 1 + C T UCS 117152659 + 117152639 117152679 41 CAGTCCCTCTCTGGCTCCTCGGATGCCCTTCTCCATTGGGC CAGTCCCTCTCTGGCTCCTTGGATGCCCTTCTCCATTGGGC < 41bp 0.538675487204379 0.746025000033127 NA NA prediction 0.414699025657496 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117152659 chr11:117152658 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30975 0 0 1 0 1 RNF214 chr11:117152610 3'AG 117152610 Downstream 49bp 28409 chr19 19335211 19335211 1 + C T UCEC 19335212 + 19335192 19335232 41 GCAACCCACAGGAACTCTACGATGTGTATTGCTTTGCCCGG GCAACCCACAGGAACTCTATGATGTGTATTGCTTTGCCCGG < 41bp 0.52646013722862 0.733806982130626 NA NA prediction 0.414693689804012 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19335212 chr19:19335211 synonymous SNV . 0 20 hm7G_associated_SNPs_30976 0 0 0 0 2 NCAN chr19:19335115 3'AG 19335115 Downstream 97bp 28410 chr19 19335211 19335211 1 + C T UCEC 19335212 + 19335192 19335232 41 GCAACCCACAGGAACTCTACGATGTGTATTGCTTTGCCCGG GCAACCCACAGGAACTCTATGATGTGTATTGCTTTGCCCGG < 41bp 0.52646013722862 0.733806982130626 NA NA prediction 0.414693689804012 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19335212 chr19:19335211 synonymous SNV . 0 20 hm7G_associated_SNPs_30976 0 0 0 0 2 NCAN chr19:19335242 5'GT 19335242 Upstream 32bp 28411 chr16 31499753 31499753 1 + G A COAD 31499754 + 31499734 31499774 41 GCAGGCGCGTGTGCGGCACGGAGGTGGGCTGCTCCAACATC GCAGGCGCGTGTGCGGCACAGAGGTGGGCTGCTCCAACATC < 41bp 0.491308798164976 0.70734567650963 NA NA prediction 0.41469135301926 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31499754 chr16:31499753 synonymous SNV . 0 20 hm7G_associated_SNPs_30977 0 0 0 0 2 SLC5A2 chr16:31499704 3'AG 31499704 Downstream 50bp 28412 chr16 31499753 31499753 1 + G A COAD 31499754 + 31499734 31499774 41 GCAGGCGCGTGTGCGGCACGGAGGTGGGCTGCTCCAACATC GCAGGCGCGTGTGCGGCACAGAGGTGGGCTGCTCCAACATC < 41bp 0.491308798164976 0.70734567650963 NA NA prediction 0.41469135301926 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31499754 chr16:31499753 synonymous SNV . 0 20 hm7G_associated_SNPs_30977 0 0 0 0 2 SLC5A2 chr16:31499811 5'GT 31499811 Upstream 59bp 28413 chr11 6412081 6412081 1 + G A rs368200803 6412082 + 6412062 6412102 41 CCGGCTCCGAGATGTCTTTGGGTGGGGGAACCTCACCTGCC CCGGCTCCGAGATGTCTTTAGGTGGGGGAACCTCACCTGCC < 41bp 0.543737592582002 0.751081540885921 NA NA prediction 0.414687896607837 Functional Gain - SMPD1 ENSG00000166311 CDS Human protein_coding chr11:6412082 chr11:6412081 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_30979 0 0 1 0 1 SMPD1 chr11:6412146 5'GT 6412146 Upstream 66bp 28414 chr3 47449925 47449925 1 + C T LUSC 47449926 + 47449906 47449946 41 CCCAGCTCATGGAGAAGTGCGCGGCTCTCAGCGTCCGGCCC CCCAGCTCATGGAGAAGTGTGCGGCTCTCAGCGTCCGGCCC < 41bp 0.49882605939994 0.707343199176445 NA NA prediction 0.41468639835289 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47449926 chr3:47449925 synonymous SNV . 0 20 hm7G_associated_SNPs_30980 0 0 0 0 2 PTPN23 chr3:47449835 3'AG 47449835 Downstream 91bp 28415 chr3 47449925 47449925 1 + C T LUSC 47449926 + 47449906 47449946 41 CCCAGCTCATGGAGAAGTGCGCGGCTCTCAGCGTCCGGCCC CCCAGCTCATGGAGAAGTGTGCGGCTCTCAGCGTCCGGCCC < 41bp 0.49882605939994 0.707343199176445 NA NA prediction 0.41468639835289 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47449926 chr3:47449925 synonymous SNV . 0 20 hm7G_associated_SNPs_30980 0 0 0 0 2 PTPN23 chr3:47449980 5'GT 47449980 Upstream 56bp 28416 chr7 107303845 107303845 1 + C T BLCA 107303846 + 107303826 107303866 41 CTGCTTAGTGACGTCATTTCGGGAGTTAGTACTGGGCTAGT CTGCTTAGTGACGTCATTTTGGGAGTTAGTACTGGGCTAGT < 41bp 0.516694865980946 0.724036663797866 NA NA prediction 0.41468359563384 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107303846 chr7:107303845 nonsynonymous SNV 0.686 5 20 hm7G_associated_SNPs_30982 1 0 0 0 1 SLC26A4 chr7:107303880 5'GT 107303880 Upstream 36bp 28417 chr4 5806556 5806556 1 + C T UCEC 5806557 + 5806537 5806577 41 GCTCATGAGACCTCCCAGGCGGTCCACCAGAGGTGAGGTCC GCTCATGAGACCTCCCAGGTGGTCCACCAGAGGTGAGGTCC < 41bp 0.505748651712377 0.713086417228449 NA NA prediction 0.414675531032145 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5806557 chr4:5806556 nonsynonymous SNV 0.042 0 20 hm7G_associated_SNPs_30985 0 0 0 0 2 EVC chr4:5806457 3'AG 5806457 Downstream 100bp 28418 chr4 5806556 5806556 1 + C T UCEC 5806557 + 5806537 5806577 41 GCTCATGAGACCTCCCAGGCGGTCCACCAGAGGTGAGGTCC GCTCATGAGACCTCCCAGGTGGTCCACCAGAGGTGAGGTCC < 41bp 0.505748651712377 0.713086417228449 NA NA prediction 0.414675531032145 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5806557 chr4:5806556 nonsynonymous SNV 0.042 0 20 hm7G_associated_SNPs_30985 0 0 0 0 2 EVC chr4:5806568 5'GT 5806568 Upstream 13bp 28419 chrX 47034426 47034426 1 + C T SKCM 47034427 + 47034407 47034447 41 GCTGTCTCCAGGTCAGAGCCGGGGCTTCGCCTTCGTCGAGT GCTGTCTCCAGGTCAGAGCTGGGGCTTCGCCTTCGTCGAGT < 41bp 0.500906407275165 0.708243991365401 NA NA prediction 0.414675168180473 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47034427 chrX:47034426 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30986 0 0 1 0 2 RBM10 chrX:47034418 3'AG 47034418 Downstream 9bp 28420 chrX 47034426 47034426 1 + C T SKCM 47034427 + 47034407 47034447 41 GCTGTCTCCAGGTCAGAGCCGGGGCTTCGCCTTCGTCGAGT GCTGTCTCCAGGTCAGAGCTGGGGCTTCGCCTTCGTCGAGT < 41bp 0.500906407275165 0.708243991365401 NA NA prediction 0.414675168180473 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47034427 chrX:47034426 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_30986 0 0 1 0 2 RBM10 chrX:47034491 5'GT 47034491 Upstream 66bp 28421 chr9 131812122 131812122 1 + G A rs143593912 131812123 + 131812103 131812143 41 CAGGCATGGAGCTGTTTGAGGAAGCTCTGCAGAAGTGGGAG CAGGCATGGAGCTGTTTGAAGAAGCTCTGCAGAAGTGGGAG < 41bp 0.533443078022974 0.740780190458396 NA NA prediction 0.414674224870845 Functional Gain - MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131812123 chr9:131812122 synonymous SNV . 0 20 hm7G_associated_SNPs_30987 0 0 1 1 1 MIGA2 chr9:131812106 3'AG 131812106 Downstream 17bp 28422 chr19 44469186 44469186 1 + C T STAD 44469187 + 44469167 44469207 41 TGCCCAGAGGAAGCTGTACCGAGATGTGATGCTAGAGAACT TGCCCAGAGGAAGCTGTACTGAGATGTGATGCTAGAGAACT < 41bp 0.500084125140086 0.707419392317217 NA NA prediction 0.41467053435426 Functional Gain - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469187 chr19:44469186 stopgain 0.994 0 20 hm7G_associated_SNPs_30988 0 0 1 0 2 ZNF221 chr19:44469102 3'AG 44469102 Downstream 85bp 28423 chr19 44469186 44469186 1 + C T STAD 44469187 + 44469167 44469207 41 TGCCCAGAGGAAGCTGTACCGAGATGTGATGCTAGAGAACT TGCCCAGAGGAAGCTGTACTGAGATGTGATGCTAGAGAACT < 41bp 0.500084125140086 0.707419392317217 NA NA prediction 0.41467053435426 Functional Gain - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469187 chr19:44469186 stopgain 0.994 0 20 hm7G_associated_SNPs_30988 0 0 1 0 2 ZNF221 chr19:44469228 5'GT 44469228 Upstream 43bp 28424 chr20 31196201 31196201 1 + G A rs114916629 31196202 + 31196182 31196222 41 TCACAGCACTGTGCTTCCCGGGGCCCACTTGTACAGGCCCC TCACAGCACTGTGCTTCCCAGGGCCCACTTGTACAGGCCCC < 41bp 0.546497781627086 0.753828238615781 NA NA prediction 0.414660913977388 Functional Gain - LOC149950 ENSG00000204393 CDS Human lincRNA chr20:31196202 chr20:31196201 synonymous SNV . 0 20 hm7G_associated_SNPs_30989 0 0 0 0 1 LOC149950 chr20:31196112 3'AG 31196112 Downstream 90bp 28425 chr11 66238792 66238792 1 + G A COAD 66238793 + 66238773 66238813 41 CCGCCGGTCGCACGCCAACGGGGTGAAGCCAGACGTCATGC CCGCCGGTCGCACGCCAACAGGGTGAAGCCAGACGTCATGC < 41bp 0.577602273425616 0.784929730750211 NA NA prediction 0.41465491464919 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66238793 chr11:66238792 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_30991 0 0 0 0 1 PELI3 chr11:66238713 3'AG 66238713 Downstream 80bp 28426 chr9 2181578 2181578 1 + C T COAD 2181579 + 2181559 2181599 41 CCCATCCTACAGTTCAGGGCGACAGCTCAGTGAAGTCTTCA CCCATCCTACAGTTCAGGGTGACAGCTCAGTGAAGTCTTCA < 41bp 0.507424723931937 0.714750591092366 NA NA prediction 0.414651734320859 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2181579 chr9:2181578 stopgain 0.998 1 20 hm7G_associated_SNPs_30993 0 0 0 0 2 SMARCA2 chr9:2181571 3'AG 2181571 Downstream 8bp 28427 chr9 2181578 2181578 1 + C T COAD 2181579 + 2181559 2181599 41 CCCATCCTACAGTTCAGGGCGACAGCTCAGTGAAGTCTTCA CCCATCCTACAGTTCAGGGTGACAGCTCAGTGAAGTCTTCA < 41bp 0.507424723931937 0.714750591092366 NA NA prediction 0.414651734320859 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2181579 chr9:2181578 stopgain 0.998 1 20 hm7G_associated_SNPs_30993 0 0 0 0 2 SMARCA2 chr9:2181676 5'GT 2181676 Upstream 99bp 28428 chr4 6612829 6612829 1 + G A COAD 6612830 + 6612810 6612850 41 CAGGTCATGCTCCACCGGCGGCTGTGGAACAACTTCGACTG CAGGTCATGCTCCACCGGCAGCTGTGGAACAACTTCGACTG < 41bp 0.530504383216575 0.737826264186206 NA NA prediction 0.414643761939263 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6612830 chr4:6612829 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_30995 0 0 0 0 1 MAN2B2 chr4:6612813 3'AG 6612813 Downstream 17bp 28429 chr20 2384078 2384078 1 + G A rs201645096 2384079 + 2384059 2384099 41 AATGAGAGCTGGTTTGCCCGGCAGGACCTAGGCCCCTCTTA AATGAGAGCTGGTTTGCCCAGCAGGACCTAGGCCCCTCTTA < 41bp 0.570615132975349 0.777936083285577 NA NA prediction 0.414641900620457 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384079 chr20:2384078 nonsynonymous SNV 0.845 5 20 hm7G_associated_SNPs_30996 1 0 0 0 2 TGM6 chr20:2384043 3'AG 2384043 Downstream 36bp 28430 chr20 2384078 2384078 1 + G A rs201645096 2384079 + 2384059 2384099 41 AATGAGAGCTGGTTTGCCCGGCAGGACCTAGGCCCCTCTTA AATGAGAGCTGGTTTGCCCAGCAGGACCTAGGCCCCTCTTA < 41bp 0.570615132975349 0.777936083285577 NA NA prediction 0.414641900620457 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384079 chr20:2384078 nonsynonymous SNV 0.845 5 20 hm7G_associated_SNPs_30996 1 0 0 0 2 TGM6 chr20:2384146 5'GT 2384146 Upstream 69bp 28431 chr7 105644979 105644979 1 + C T COAD 105644980 + 105644960 105645000 41 AGTGGCCCAAAGGATAGACCGAGATGCAGGTGAATTGAGAC AGTGGCCCAAAGGATAGACTGAGATGCAGGTGAATTGAGAC < 41bp 0.503311944869709 0.710627218209107 NA NA prediction 0.414630546678795 Functional Gain - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105644980 chr7:105644979 stopgain 0.973 0 20 hm7G_associated_SNPs_30998 0 0 0 0 1 CDHR3 chr7:105644944 3'AG 105644944 Downstream 36bp 28432 chr22 38129332 38129332 1 + G A rs7284476 38129333 + 38129313 38129353 41 AGGCAGCGGGGGCCTTCCAGGCCCAGGACGAGGGACGGTCA AGGCAGCGGGGGCCTTCCAAGCCCAGGACGAGGGACGGTCA < 41bp 0.486827819089143 0.707313736698084 NA NA prediction 0.414627473396168 Functional Gain - TRIOBP ENSG00000100106 CDS Human protein_coding chr22:38129333 chr22:38129332 synonymous SNV . 0 20 hm7G_associated_SNPs_30999 1 0 0 0 2 TRIOBP chr22:38129305 3'AG 38129305 Downstream 28bp 28433 chr22 38129332 38129332 1 + G A rs7284476 38129333 + 38129313 38129353 41 AGGCAGCGGGGGCCTTCCAGGCCCAGGACGAGGGACGGTCA AGGCAGCGGGGGCCTTCCAAGCCCAGGACGAGGGACGGTCA < 41bp 0.486827819089143 0.707313736698084 NA NA prediction 0.414627473396168 Functional Gain - TRIOBP ENSG00000100106 CDS Human protein_coding chr22:38129333 chr22:38129332 synonymous SNV . 0 20 hm7G_associated_SNPs_30999 1 0 0 0 2 TRIOBP chr22:38129419 5'GT 38129419 Upstream 88bp 28434 chr11 63764120 63764120 1 + G A UCEC 63764121 + 63764101 63764141 41 GACAGCAAGGAGTTGCAGCGGTGAGAAGGGTGGGCACTGGG GACAGCAAGGAGTTGCAGCAGTGAGAAGGGTGGGCACTGGG < 41bp 0.531150744356591 0.73846097135926 NA NA prediction 0.414620454005338 Functional Gain - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764121 chr11:63764120 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_31001 0 0 1 0 1 OTUB1 chr11:63764120 5'GT 63764120 Upstream 1bp 28435 chrX 48650816 48650816 1 + G A UCEC 48650817 + 48650797 48650837 41 CTACCTATGCAACGCCTGCGGCCTCTATCACAAGATGAATG CTACCTATGCAACGCCTGCAGCCTCTATCACAAGATGAATG < 41bp 0.513531969923069 0.720838697557577 NA NA prediction 0.414613455269015 Functional Gain - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48650817 chrX:48650816 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_31003 0 0 0 0 2 GATA1 chrX:48650730 3'AG 48650730 Downstream 87bp 28436 chrX 48650816 48650816 1 + G A UCEC 48650817 + 48650797 48650837 41 CTACCTATGCAACGCCTGCGGCCTCTATCACAAGATGAATG CTACCTATGCAACGCCTGCAGCCTCTATCACAAGATGAATG < 41bp 0.513531969923069 0.720838697557577 NA NA prediction 0.414613455269015 Functional Gain - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48650817 chrX:48650816 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_31003 0 0 0 0 2 GATA1 chrX:48650875 5'GT 48650875 Upstream 60bp 28437 chr2 233394685 233394685 1 + G A SKCM 233394686 + 233394666 233394706 41 ATAGTCCACCGGCCGGCCAGGGTCAACGTGGACCCCAGAGC ATAGTCCACCGGCCGGCCAAGGTCAACGTGGACCCCAGAGC < 41bp 0.577590066551582 0.784896583826993 NA NA prediction 0.414613034550821 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233394686 chr2:233394685 nonsynonymous SNV 0.826 0 20 hm7G_associated_SNPs_31004 0 0 0 0 1 CHRND chr2:233394649 3'AG 233394649 Downstream 37bp 28438 chr1 112308381 112308381 1 + G T SARC 112308382 + 112308362 112308402 41 CCATTCCTTCTGGTCTGATGGAAGAATGTGTGGATTGGGAT CCATTCCTTCTGGTCTGATTGAAGAATGTGTGGATTGGGAT < 41bp 0.680808137359445 0.888114274405329 NA NA prediction 0.414612274091768 Functional Gain - DDX20 ENSG00000064703 CDS Human protein_coding chr1:112308382 chr1:112308381 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31005 0 0 1 0 1 DDX20 chr1:112308359 3'AG 112308359 Downstream 23bp 28439 chr4 156717564 156717564 1 + G T DLBC 156717565 + 156717545 156717585 41 TGGAGAAATTAGAATGTGAGGATGAACTGACTGGGACTGAG TGGAGAAATTAGAATGTGATGATGAACTGACTGGGACTGAG < 41bp 0.696708641674998 0.904014405027843 NA NA prediction 0.41461152670569 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156717565 chr4:156717564 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_31006 0 0 1 0 2 GUCY1B3 chr4:156717529 3'AG 156717529 Downstream 36bp 28440 chr4 156717564 156717564 1 + G T DLBC 156717565 + 156717545 156717585 41 TGGAGAAATTAGAATGTGAGGATGAACTGACTGGGACTGAG TGGAGAAATTAGAATGTGATGATGAACTGACTGGGACTGAG < 41bp 0.696708641674998 0.904014405027843 NA NA prediction 0.41461152670569 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156717565 chr4:156717564 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_31006 0 0 1 0 2 GUCY1B3 chr4:156717662 5'GT 156717662 Upstream 99bp 28441 chr1 77510243 77510243 1 + C T ESCA 77510244 + 77510224 77510264 41 GAAGGCCTTCATGATTACTCGCCACAAGATGCTGCAGTTTG GAAGGCCTTCATGATTACTTGCCACAAGATGCTGCAGTTTG < 41bp 0.50739063711082 0.714695427960573 NA NA prediction 0.414609581699506 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510244 chr1:77510243 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_31007 0 0 0 2 1 ST6GALNAC5 chr1:77510298 5'GT 77510298 Upstream 56bp 28442 chr19 55814216 55814216 1 + C T UCEC 55814217 + 55814197 55814237 41 GGACCGCGAGAGGCTGCATCGCGAGCTGCGCAGTGAGGAGT GGACCGCGAGAGGCTGCATTGCGAGCTGCGCAGTGAGGAGT < 41bp 0.532471977323332 0.739776536997101 NA NA prediction 0.414609119347537 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55814217 chr19:55814216 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_31008 0 0 0 0 1 BRSK1 chr19:55814235 5'GT 55814235 Upstream 20bp 28443 chr5 172113201 172113201 1 + C T UCEC 172113202 + 172113182 172113222 41 CAGTCCAGCCCTGCGACCACGACTCCATCAGGGTCCCTCAG CAGTCCAGCCCTGCGACCATGACTCCATCAGGGTCCCTCAG < 41bp 0.49613452317736 0.707304455845519 NA NA prediction 0.414608911691038 Functional Gain - NEURL1B ENSG00000214357 CDS Human protein_coding chr5:172113202 chr5:172113201 nonsynonymous SNV 0.107 1 20 hm7G_associated_SNPs_31009 0 0 0 0 2 NEURL1B chr5:172113174 3'AG 172113174 Downstream 28bp 28444 chr5 172113201 172113201 1 + C T UCEC 172113202 + 172113182 172113222 41 CAGTCCAGCCCTGCGACCACGACTCCATCAGGGTCCCTCAG CAGTCCAGCCCTGCGACCATGACTCCATCAGGGTCCCTCAG < 41bp 0.49613452317736 0.707304455845519 NA NA prediction 0.414608911691038 Functional Gain - NEURL1B ENSG00000214357 CDS Human protein_coding chr5:172113202 chr5:172113201 nonsynonymous SNV 0.107 1 20 hm7G_associated_SNPs_31009 0 0 0 0 2 NEURL1B chr5:172113299 5'GT 172113299 Upstream 99bp 28445 chr19 50735289 50735289 1 + C T UCEC 50735290 + 50735270 50735310 41 TTCCAGGAGACGCTGGAGTCGCTGCGGGTCCTGGGATTCAG TTCCAGGAGACGCTGGAGTTGCTGCGGGTCCTGGGATTCAG < 41bp 0.548921458823018 0.756224727987132 NA NA prediction 0.414606538328228 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50735290 chr19:50735289 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_31010 0 0 0 0 1 MYH14 chr19:50735327 5'GT 50735327 Upstream 39bp 28446 chr3 49753405 49753405 1 + C T rs145802061 49753406 + 49753386 49753426 41 GATATTCCTTGACTGGACCCGGCCTACCTCTGAGATGCTGC GATATTCCTTGACTGGACCTGGCCTACCTCTGAGATGCTGC < 41bp 0.523773607591014 0.731076692508893 NA NA prediction 0.414606169835758 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49753406 chr3:49753405 nonsynonymous SNV 0.963 3 20 hm7G_associated_SNPs_31011 0 0 1 0 1 RNF123 chr3:49753443 5'GT 49753443 Upstream 39bp 28447 chr21 41151172 41151172 1 + C T LUAD 41151173 + 41151153 41151193 41 ACGCTGCTGCTGCTGCCGCCGTCGTTGTTGTGGCTGCAACT ACGCTGCTGCTGCTGCCGCTGTCGTTGTTGTGGCTGCAACT < 41bp 0.505729937346757 0.713031412021724 NA NA prediction 0.414602949349935 Functional Gain - IGSF5 ENSG00000183067 CDS Human protein_coding chr21:41151173 chr21:41151172 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_31012 0 0 0 0 1 IGSF5 chr21:41151232 5'GT 41151232 Upstream 61bp 28448 chr3 10107112 10107112 1 + C T UCEC 10107113 + 10107093 10107133 41 GTGCCTGGCTCCGTATTTCCGGTTACTGAGACTTTGTGTGG GTGCCTGGCTCCGTATTTCTGGTTACTGAGACTTTGTGTGG < 41bp 0.49004215632485 0.707298907842596 NA NA prediction 0.414597815685191 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10107113 chr3:10107112 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_31013 0 0 1 0 2 FANCD2 chr3:10107078 3'AG 10107078 Downstream 35bp 28449 chr3 10107112 10107112 1 + C T UCEC 10107113 + 10107093 10107133 41 GTGCCTGGCTCCGTATTTCCGGTTACTGAGACTTTGTGTGG GTGCCTGGCTCCGTATTTCTGGTTACTGAGACTTTGTGTGG < 41bp 0.49004215632485 0.707298907842596 NA NA prediction 0.414597815685191 Functional Gain - FANCD2 ENSG00000144554 CDS Human protein_coding chr3:10107113 chr3:10107112 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_31013 0 0 1 0 2 FANCD2 chr3:10107178 5'GT 10107178 Upstream 67bp 28450 chr18 12028971 12028971 1 + G A UCEC 12028972 + 12028952 12028992 41 CATCATCAGAGAAGCAGGCGGCATCGTGATAGACACTTCGG CATCATCAGAGAAGCAGGCAGCATCGTGATAGACACTTCGG < 41bp 0.544404617991386 0.751702397392412 NA NA prediction 0.414595558802052 Functional Gain - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12028972 chr18:12028971 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_31014 0 0 1 0 1 IMPA2 chr18:12028992 5'GT 12028992 Upstream 22bp 28451 chr3 196386693 196386693 1 + G A CHOL 196386694 + 196386674 196386714 41 AGCCTCCCGCCCCACGCCCGGATGCTCACCCTGGATGCCAA AGCCTCCCGCCCCACGCCCAGATGCTCACCCTGGATGCCAA < 41bp 0.542620384390677 0.749916849886215 NA NA prediction 0.414592930991077 Functional Gain - NRROS ENSG00000174004 CDS Human protein_coding chr3:196386694 chr3:196386693 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_31015 0 0 0 0 1 NRROS chr3:196386623 3'AG 196386623 Downstream 71bp 28452 chr21 42754440 42754440 1 + C T HNSC 42754441 + 42754421 42754461 41 TGACCATCATTGACCTTCCCGGCATCACCAGGGTGGCTGTG TGACCATCATTGACCTTCCTGGCATCACCAGGGTGGCTGTG < 41bp 0.513666006654825 0.720958532115427 NA NA prediction 0.414585050921204 Functional Gain - MX2 ENSG00000183486 CDS Human protein_coding chr21:42754441 chr21:42754440 synonymous SNV . 0 20 hm7G_associated_SNPs_31017 0 0 1 0 1 MX2 chr21:42754491 5'GT 42754491 Upstream 52bp 28453 chr16 334957 334957 1 + G A rs148442250 334958 + 334938 334978 41 ACCTTTGGCCTCACAGACCGGCCGCGGCTCTTTCAGCAGTT ACCTTTGGCCTCACAGACCAGCCGCGGCTCTTTCAGCAGTT < 41bp 0.481193121717052 0.707292463269754 NA NA prediction 0.414584926539508 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334958 chr16:334957 nonsynonymous SNV 0.333 0 20 hm7G_associated_SNPs_31018 0 0 0 0 2 PDIA2 chr16:334878 3'AG 334878 Downstream 80bp 28454 chr16 334957 334957 1 + G A rs148442250 334958 + 334938 334978 41 ACCTTTGGCCTCACAGACCGGCCGCGGCTCTTTCAGCAGTT ACCTTTGGCCTCACAGACCAGCCGCGGCTCTTTCAGCAGTT < 41bp 0.481193121717052 0.707292463269754 NA NA prediction 0.414584926539508 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334958 chr16:334957 nonsynonymous SNV 0.333 0 20 hm7G_associated_SNPs_31018 0 0 0 0 2 PDIA2 chr16:335015 5'GT 335015 Upstream 59bp 28455 chr9 139751641 139751641 1 + G A UCEC 139751642 + 139751622 139751662 41 CTGCGCCTAGCCATGAGACGGGAAGGGGAGGAGACACACCT CTGCGCCTAGCCATGAGACAGGAAGGGGAGGAGACACACCT < 41bp 0.573047588710552 0.780338156966045 NA NA prediction 0.414581136510985 Functional Gain - MAMDC4 ENSG00000177943 CDS Human protein_coding chr9:139751642 chr9:139751641 nonsynonymous SNV 0.449 1 20 hm7G_associated_SNPs_31019 0 0 1 0 1 MAMDC4 chr9:139751617 3'AG 139751617 Downstream 25bp 28456 chr12 112184981 112184981 1 + C T UCEC 112184982 + 112184962 112185002 41 GCTCCTGTTTTGCTATGACCGAGCCCCAGGTACGTCGCCTG GCTCCTGTTTTGCTATGACTGAGCCCCAGGTACGTCGCCTG < 41bp 0.509823813763864 0.717113649916128 NA NA prediction 0.414579672304529 Functional Gain - ACAD10 ENSG00000111271 CDS Human protein_coding chr12:112184982 chr12:112184981 synonymous SNV . 0 20 hm7G_associated_SNPs_31021 0 0 1 0 1 ACAD10 chr12:112184990 5'GT 112184990 Upstream 10bp 28457 chr19 15648390 15648390 1 + C T GBM 15648391 + 15648371 15648411 41 TGACAAGTGGAGCCGGCACCGTCGCCTGCTGACACCCGCCT TGACAAGTGGAGCCGGCACTGTCGCCTGCTGACACCCGCCT < 41bp 0.501757554161781 0.709045894019326 NA NA prediction 0.414576679715089 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15648391 chr19:15648390 nonsynonymous SNV 0.706 5 20 hm7G_associated_SNPs_31022 0 0 0 0 2 CYP4F22 chr19:15648346 3'AG 15648346 Downstream 45bp 28458 chr19 15648390 15648390 1 + C T GBM 15648391 + 15648371 15648411 41 TGACAAGTGGAGCCGGCACCGTCGCCTGCTGACACCCGCCT TGACAAGTGGAGCCGGCACTGTCGCCTGCTGACACCCGCCT < 41bp 0.501757554161781 0.709045894019326 NA NA prediction 0.414576679715089 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15648391 chr19:15648390 nonsynonymous SNV 0.706 5 20 hm7G_associated_SNPs_31022 0 0 0 0 2 CYP4F22 chr19:15648473 5'GT 15648473 Upstream 84bp 28459 chr1 207242832 207242832 1 + C T BLCA 207242833 + 207242813 207242853 41 CCCAGAAGAGTTTGCACTTCGAGATCAAGAGAAGTATCTGT CCCAGAAGAGTTTGCACTTTGAGATCAAGAGAAGTATCTGT < 41bp 0.508115786895691 0.715398374079754 NA NA prediction 0.414565174368126 Functional Gain - PFKFB2 ENSG00000123836 CDS Human protein_coding chr1:207242833 chr1:207242832 stopgain 0.998 1 20 hm7G_associated_SNPs_31025 0 0 1 0 1 PFKFB2 chr1:207242873 5'GT 207242873 Upstream 42bp 28460 chr11 71819718 71819718 1 + G A rs61741195 71819719 + 71819699 71819739 41 ACCCAGTATCAGCTGAGTCGGGCAGACCTGGTGCTCCTGGC ACCCAGTATCAGCTGAGTCAGGCAGACCTGGTGCTCCTGGC < 41bp 0.504120534020034 0.71140205969757 NA NA prediction 0.414563051355073 Functional Gain - LRTOMT ENSG00000184154 CDS Human protein_coding chr11:71819719 chr11:71819718 nonsynonymous SNV 0.938 0 20 hm7G_associated_SNPs_31026 1 0 0 0 1 LRTOMT chr11:71819651 3'AG 71819651 Downstream 68bp 28461 chr9 140052906 140052906 1 + C T rs143483243 140052907 + 140052887 140052927 41 AGGATGGGGACCGGAAGTTCGCCAACTACAGCATCATGAAC AGGATGGGGACCGGAAGTTTGCCAACTACAGCATCATGAAC < 41bp 0.51364799056781 0.720927411498417 NA NA prediction 0.414558841861213 Functional Gain - GRIN1 ENSG00000176884 CDS Human protein_coding chr9:140052907 chr9:140052906 synonymous SNV . 0 20 hm7G_associated_SNPs_31027 1 0 0 0 1 GRIN1 chr9:140052975 5'GT 140052975 Upstream 70bp 28462 chr10 103986385 103986385 1 + G T COAD 103986386 + 103986366 103986406 41 GAGCTGTCCAAGGACATGAGGCCCTTTTTCGAGGAGTATTG GAGCTGTCCAAGGACATGATGCCCTTTTTCGAGGAGTATTG < 41bp 0.384274263609663 0.707278603628404 NA NA prediction 0.414557207256809 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103986386 chr10:103986385 nonsynonymous SNV 0.951 1 20 hm7G_associated_SNPs_31028 0 0 0 0 1 ELOVL3 chr10:103986406 5'GT 103986406 Upstream 22bp 28463 chr1 6100674 6100674 1 + C T UCEC 6100675 + 6100655 6100695 41 CCCGGCTCGGCTCTCGCTGCGGCAGACGGGCTCCCCCGGGA CCCGGCTCGGCTCTCGCTGTGGCAGACGGGCTCCCCCGGGA < 41bp 0.495727789129498 0.707277375090551 NA NA prediction 0.414554750181102 Functional Gain - KCNAB2 ENSG00000069424;ENSG00000268332 CDS Human protein_coding chr1:6100675 chr1:6100674 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_31029 0 0 1 0 2 KCNAB2 chr1:6100577 3'AG 6100577 Downstream 98bp 28464 chr1 6100674 6100674 1 + C T UCEC 6100675 + 6100655 6100695 41 CCCGGCTCGGCTCTCGCTGCGGCAGACGGGCTCCCCCGGGA CCCGGCTCGGCTCTCGCTGTGGCAGACGGGCTCCCCCGGGA < 41bp 0.495727789129498 0.707277375090551 NA NA prediction 0.414554750181102 Functional Gain - KCNAB2 ENSG00000069424;ENSG00000268332 CDS Human protein_coding chr1:6100675 chr1:6100674 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_31029 0 0 1 0 2 KCNAB2 chr1:6100705 5'GT 6100705 Upstream 32bp 28465 chr16 56902283 56902283 1 + C T SKCM 56902284 + 56902264 56902304 41 TTACGGCCCAGGCAGGCATCGGTGAGTGCCCCTCTGGGGAA TTACGGCCCAGGCAGGCATTGGTGAGTGCCCCTCTGGGGAA < 41bp 0.497457765945637 0.707276190737247 NA NA prediction 0.414552381474493 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56902284 chr16:56902283 synonymous SNV . 0 20 hm7G_associated_SNPs_31030 0 0 0 0 2 SLC12A3 chr16:56902209 3'AG 56902209 Downstream 75bp 28466 chr16 56902283 56902283 1 + C T SKCM 56902284 + 56902264 56902304 41 TTACGGCCCAGGCAGGCATCGGTGAGTGCCCCTCTGGGGAA TTACGGCCCAGGCAGGCATTGGTGAGTGCCCCTCTGGGGAA < 41bp 0.497457765945637 0.707276190737247 NA NA prediction 0.414552381474493 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56902284 chr16:56902283 synonymous SNV . 0 20 hm7G_associated_SNPs_31030 0 0 0 0 2 SLC12A3 chr16:56902284 5'GT 56902284 Upstream 2bp 28467 chr1 33234269 33234269 1 + C T ESCA 33234270 + 33234250 33234290 41 TAGTCCTCCCGGACGGGGCCGGATGAAGACAACATCTCCTT TAGTCCTCCCGGACGGGGCTGGATGAAGACAACATCTCCTT < 41bp 0.523104554053764 0.730379887796596 NA NA prediction 0.414550667485663 Functional Gain - KIAA1522 ENSG00000162522 CDS Human protein_coding chr1:33234270 chr1:33234269 nonsynonymous SNV 0.300 2 20 hm7G_associated_SNPs_31031 0 0 1 0 1 KIAA1522 chr1:33234253 3'AG 33234253 Downstream 17bp 28468 chr11 372152 372152 1 + C T UCEC 372153 + 372133 372173 41 CCGACGGCCGGGGGGTCCACGCTGCGCCATCCACACAGAGG CCGACGGCCGGGGGGTCCATGCTGCGCCATCCACACAGAGG < 41bp 0.500045146510865 0.707320033562623 NA NA prediction 0.414549774103517 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372153 chr11:372152 synonymous SNV . 0 20 hm7G_associated_SNPs_31033 0 0 1 0 2 B4GALNT4 chr11:372109 3'AG 372109 Downstream 44bp 28469 chr11 372152 372152 1 + C T UCEC 372153 + 372133 372173 41 CCGACGGCCGGGGGGTCCACGCTGCGCCATCCACACAGAGG CCGACGGCCGGGGGGTCCATGCTGCGCCATCCACACAGAGG < 41bp 0.500045146510865 0.707320033562623 NA NA prediction 0.414549774103517 Functional Gain - B4GALNT4 ENSG00000182272 CDS Human protein_coding chr11:372153 chr11:372152 synonymous SNV . 0 20 hm7G_associated_SNPs_31033 0 0 1 0 2 B4GALNT4 chr11:372212 5'GT 372212 Upstream 61bp 28470 chr2 97216457 97216457 1 + G A UCEC 97216458 + 97216438 97216478 41 AAGAAGGCCAAGGAGGAGCGGCGCATGGACCAGGTAGGCCT AAGAAGGCCAAGGAGGAGCAGCGCATGGACCAGGTAGGCCT < 41bp 0.570901920566092 0.778176747204446 NA NA prediction 0.414549653276709 Functional Gain - ARID5A ENSG00000196843 CDS Human protein_coding chr2:97216458 chr2:97216457 nonsynonymous SNV 0.319 1 20 hm7G_associated_SNPs_31034 0 0 0 0 1 ARID5A chr2:97216470 5'GT 97216470 Upstream 14bp 28471 chr4 20620405 20620405 1 + G T COAD 20620406 + 20620386 20620426 41 TCTAGAAATCTCTTGTCGAGGGGAAAGGATAAGAGATTATT TCTAGAAATCTCTTGTCGATGGGAAAGGATAAGAGATTATT < 41bp 0.394738929677259 0.707274279272472 NA NA prediction 0.414548558544944 Functional Gain - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20620406 chr4:20620405 nonsynonymous SNV 0.815 4 20 hm7G_associated_SNPs_31035 0 0 1 0 1 SLIT2 chr4:20620391 3'AG 20620391 Downstream 15bp 28472 chr11 111845646 111845646 1 + C T LAML 111845647 + 111845627 111845667 41 GAATCCATACTGGAGTGTGCGGGCCCTAGTGCAGCAGTACG GAATCCATACTGGAGTGTGTGGGCCCTAGTGCAGCAGTACG < 41bp 0.531964951142477 0.739238923684244 NA NA prediction 0.414547945083533 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111845647 chr11:111845646 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31037 0 0 1 0 2 DIXDC1 chr11:111845600 3'AG 111845600 Downstream 47bp 28473 chr11 111845646 111845646 1 + C T LAML 111845647 + 111845627 111845667 41 GAATCCATACTGGAGTGTGCGGGCCCTAGTGCAGCAGTACG GAATCCATACTGGAGTGTGTGGGCCCTAGTGCAGCAGTACG < 41bp 0.531964951142477 0.739238923684244 NA NA prediction 0.414547945083533 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111845647 chr11:111845646 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31037 0 0 1 0 2 DIXDC1 chr11:111845707 5'GT 111845707 Upstream 62bp 28474 chr1 11579855 11579855 1 + C T STAD 11579856 + 11579836 11579876 41 CCTCCAACACGGGCAGCCGCGGCCATCTCATCGTGCAGCTG CCTCCAACACGGGCAGCCGTGGCCATCTCATCGTGCAGCTG < 41bp 0.505027265349854 0.712300540998308 NA NA prediction 0.414546551296907 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579856 chr1:11579855 synonymous SNV . 0 20 hm7G_associated_SNPs_31038 0 0 0 0 1 DISP3 chr1:11579937 5'GT 11579937 Upstream 83bp 28475 chr3 126386006 126386006 1 + G A SKCM 126386007 + 126385987 126386027 41 AGGCAGCACAGCTTCTGGGGGCATTCCCAGTGCTGGCACCC AGGCAGCACAGCTTCTGGGAGCATTCCCAGTGCTGGCACCC < 41bp 0.507240813265214 0.714512290165012 NA NA prediction 0.414542953799595 Functional Gain - NUP210P1 ENSG00000198284 ncRNA_exonic Human transcribed_processed_pseudogene chr3:126386007 chr3:126386006 . . 0 20 hm7G_associated_SNPs_31040 0 0 0 0 1 NUP210P1 chr3:126385949 3'AG 126385949 Downstream 58bp 28476 chr19 56565025 56565025 1 + C T rs139664065 56565026 + 56565006 56565046 41 TGGTAAAGTGTCATCTCACCGCCGCGTGCTGTGAGAGTCTG TGGTAAAGTGTCATCTCACTGCCGCGTGCTGTGAGAGTCTG < 41bp 0.501189089996856 0.708459941252815 NA NA prediction 0.414541702511919 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565026 chr19:56565025 synonymous SNV . 0 20 hm7G_associated_SNPs_31041 0 0 0 0 1 NLRP5 chr19:56565004 3'AG 56565004 Downstream 22bp 28477 chr10 50863221 50863221 1 + C T HNSC 50863222 + 50863202 50863242 41 CGCGTGGACAACATCAGATCGGCCACTCCAGAGGCACTGGC CGCGTGGACAACATCAGATTGGCCACTCCAGAGGCACTGGC < 41bp 0.490260756493409 0.707270443301319 NA NA prediction 0.414540886602638 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50863222 chr10:50863221 nonsynonymous SNV 0.852 5 20 hm7G_associated_SNPs_31042 0 0 0 0 2 CHAT chr10:50863141 3'AG 50863141 Downstream 81bp 28478 chr10 50863221 50863221 1 + C T HNSC 50863222 + 50863202 50863242 41 CGCGTGGACAACATCAGATCGGCCACTCCAGAGGCACTGGC CGCGTGGACAACATCAGATTGGCCACTCCAGAGGCACTGGC < 41bp 0.490260756493409 0.707270443301319 NA NA prediction 0.414540886602638 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50863222 chr10:50863221 nonsynonymous SNV 0.852 5 20 hm7G_associated_SNPs_31042 0 0 0 0 2 CHAT chr10:50863282 5'GT 50863282 Upstream 62bp 28479 chr3 119533865 119533865 1 + G A rs12721612 119533866 + 119533846 119533886 41 AGATCTCCCTGCTGAAGGGGGCCGCTTTCGAGCTGTGTCAA AGATCTCCCTGCTGAAGGGAGCCGCTTTCGAGCTGTGTCAA < 41bp 0.490331936502774 0.707262355026269 NA NA prediction 0.414524710052538 Functional Gain - NR1I2 ENSG00000144852 CDS Human protein_coding chr3:119533866 chr3:119533865 synonymous SNV . 0 20 hm7G_associated_SNPs_31045 0 0 1 0 1 NR1I2 chr3:119533826 3'AG 119533826 Downstream 40bp 28480 chr6 160501273 160501273 1 + C T UCEC 160501274 + 160501254 160501294 41 GTAGCACAACTGCGGACTACGACAGAGACCACGAGTGGGGC GTAGCACAACTGCGGACTATGACAGAGACCACGAGTGGGGC < 41bp 0.507472304409679 0.714730955863718 NA NA prediction 0.414517302908078 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160501274 chr6:160501273 synonymous SNV . 0 20 hm7G_associated_SNPs_31047 0 0 1 0 1 IGF2R chr6:160501307 5'GT 160501307 Upstream 35bp 28481 chr12 4385356 4385356 1 + C T UCEC 4385357 + 4385337 4385377 41 AGAAGCTGTGCATTTACACCGACAACTCCATCAAGCCTCAG AGAAGCTGTGCATTTACACTGACAACTCCATCAAGCCTCAG < 41bp 0.521943550454782 0.729200654755881 NA NA prediction 0.414514208602198 Functional Gain - CCND2 ENSG00000118971 CDS Human protein_coding chr12:4385357 chr12:4385356 synonymous SNV . 0 20 hm7G_associated_SNPs_31049 0 0 1 0 1 CCND2 chr12:4385386 5'GT 4385386 Upstream 31bp 28482 chr11 2929473 2929473 1 + G A HNSC 2929474 + 2929454 2929494 41 GTGTTTCAGTACCTGTCTCGGAAACTGGGCCTGGATTCCAT GTGTTTCAGTACCTGTCTCAGAAACTGGGCCTGGATTCCAT < 41bp 0.52312051136317 0.730376930743056 NA NA prediction 0.414512838759773 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2929474 chr11:2929473 nonsynonymous SNV 0.273 0 20 hm7G_associated_SNPs_31050 0 0 0 0 2 SLC22A18 chr11:2929463 3'AG 2929463 Downstream 11bp 28483 chr11 2929473 2929473 1 + G A HNSC 2929474 + 2929454 2929494 41 GTGTTTCAGTACCTGTCTCGGAAACTGGGCCTGGATTCCAT GTGTTTCAGTACCTGTCTCAGAAACTGGGCCTGGATTCCAT < 41bp 0.52312051136317 0.730376930743056 NA NA prediction 0.414512838759773 Functional Gain - SLC22A18 ENSG00000110628 CDS Human protein_coding chr11:2929474 chr11:2929473 nonsynonymous SNV 0.273 0 20 hm7G_associated_SNPs_31050 0 0 0 0 2 SLC22A18 chr11:2929560 5'GT 2929560 Upstream 88bp 28484 chr1 150531009 150531009 1 + G A COAD 150531010 + 150530990 150531030 41 TCGCTGTGTTGGGAACAATGGTGATGAAGTGAGCGAGCAGG TCGCTGTGTTGGGAACAATAGTGATGAAGTGAGCGAGCAGG < 41bp 0.525419509399295 0.732675583935818 NA NA prediction 0.414512149073047 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150531010 chr1:150531009 nonsynonymous SNV 0.035 3 20 hm7G_associated_SNPs_31051 0 0 1 0 1 ADAMTSL4 chr1:150530949 3'AG 150530949 Downstream 61bp 28485 chr1 87025977 87025977 1 + C T UCEC 87025978 + 87025958 87025998 41 CAGAATGTGGAGAGAAAGGCGAATACATTCACTTCACCCCT CAGAATGTGGAGAGAAAGGTGAATACATTCACTTCACCCCT < 41bp 0.509396642609061 0.716647584307162 NA NA prediction 0.4145018833962 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87025978 chr1:87025977 synonymous SNV . 0 20 hm7G_associated_SNPs_31053 0 0 0 0 2 CLCA4 chr1:87025894 3'AG 87025894 Downstream 84bp 28486 chr1 87025977 87025977 1 + C T UCEC 87025978 + 87025958 87025998 41 CAGAATGTGGAGAGAAAGGCGAATACATTCACTTCACCCCT CAGAATGTGGAGAGAAAGGTGAATACATTCACTTCACCCCT < 41bp 0.509396642609061 0.716647584307162 NA NA prediction 0.4145018833962 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87025978 chr1:87025977 synonymous SNV . 0 20 hm7G_associated_SNPs_31053 0 0 0 0 2 CLCA4 chr1:87026041 5'GT 87026041 Upstream 65bp 28487 chr1 26013026 26013026 1 + C T SKCM 26013027 + 26013007 26013047 41 GCTACGAGGGTAACATGTTCGGTGAGTCGATTCAAACCACT GCTACGAGGGTAACATGTTTGGTGAGTCGATTCAAACCACT < 41bp 0.498766034341341 0.707249662720898 NA NA prediction 0.414499325441796 Functional Gain - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26013027 chr1:26013026 synonymous SNV . 0 20 hm7G_associated_SNPs_31054 0 0 0 0 2 MAN1C1 chr1:26012931 3'AG 26012931 Downstream 96bp 28488 chr1 26013026 26013026 1 + C T SKCM 26013027 + 26013007 26013047 41 GCTACGAGGGTAACATGTTCGGTGAGTCGATTCAAACCACT GCTACGAGGGTAACATGTTTGGTGAGTCGATTCAAACCACT < 41bp 0.498766034341341 0.707249662720898 NA NA prediction 0.414499325441796 Functional Gain - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26013027 chr1:26013026 synonymous SNV . 0 20 hm7G_associated_SNPs_31054 0 0 0 0 2 MAN1C1 chr1:26013027 5'GT 26013027 Upstream 2bp 28489 chr1 220287725 220287725 1 + C T COAD 220287726 + 220287706 220287746 41 GGTTGAAATGATGGACAGGCGGCCATATTGGTGTATATCAA GGTTGAAATGATGGACAGGTGGCCATATTGGTGTATATCAA < 41bp 0.51136902364722 0.71861463812374 NA NA prediction 0.41449122895304 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220287726 chr1:220287725 nonsynonymous SNV 0.954 3 20 hm7G_associated_SNPs_31056 0 0 1 0 2 IARS2 chr1:220287656 3'AG 220287656 Downstream 70bp 28490 chr1 220287725 220287725 1 + C T COAD 220287726 + 220287706 220287746 41 GGTTGAAATGATGGACAGGCGGCCATATTGGTGTATATCAA GGTTGAAATGATGGACAGGTGGCCATATTGGTGTATATCAA < 41bp 0.51136902364722 0.71861463812374 NA NA prediction 0.41449122895304 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220287726 chr1:220287725 nonsynonymous SNV 0.954 3 20 hm7G_associated_SNPs_31056 0 0 1 0 2 IARS2 chr1:220287816 5'GT 220287816 Upstream 92bp 28491 chr11 60882546 60882546 1 + G A rs62641694 60882547 + 60882527 60882567 41 GTCGCTTCCTGCCTCGGACGGCTCAGCTGGTATGACCCAGG GTCGCTTCCTGCCTCGGACAGCTCAGCTGGTATGACCCAGG < 41bp 0.563790104763025 0.771033967270914 NA NA prediction 0.414487725015778 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60882547 chr11:60882546 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_31058 0 0 0 0 2 CD5 chr11:60882528 3'AG 60882528 Downstream 19bp 28492 chr11 60882546 60882546 1 + G A rs62641694 60882547 + 60882527 60882567 41 GTCGCTTCCTGCCTCGGACGGCTCAGCTGGTATGACCCAGG GTCGCTTCCTGCCTCGGACAGCTCAGCTGGTATGACCCAGG < 41bp 0.563790104763025 0.771033967270914 NA NA prediction 0.414487725015778 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60882547 chr11:60882546 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_31058 0 0 0 0 2 CD5 chr11:60882566 5'GT 60882566 Upstream 21bp 28493 chr19 10404612 10404612 1 + G A rs36045754 10404613 + 10404593 10404633 41 CCAAAAATGTGGCCGTCACGGTGGAATGTGAGTAGGGGCAC CCAAAAATGTGGCCGTCACAGTGGAATGTGAGTAGGGGCAC < 41bp 0.504891883926307 0.712132608303323 NA NA prediction 0.414481448754032 Functional Gain - ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10404613 chr19:10404612 synonymous SNV . 0 20 hm7G_associated_SNPs_31059 0 0 0 0 1 ICAM5 chr19:10404619 5'GT 10404619 Upstream 8bp 28494 chr12 109283278 109283278 1 + C T LIHC 109283279 + 109283259 109283299 41 GGACACAGTTCTGGGATTTCGGAAGCTGACCCCCAGAGAGC GGACACAGTTCTGGGATTTTGGAAGCTGACCCCCAGAGAGC < 41bp 0.525019900840168 0.732260166689846 NA NA prediction 0.414480531699356 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109283279 chr12:109283278 nonsynonymous SNV 0.985 5 20 hm7G_associated_SNPs_31060 0 0 0 0 2 DAO chr12:109283245 3'AG 109283245 Downstream 34bp 28495 chr12 109283278 109283278 1 + C T LIHC 109283279 + 109283259 109283299 41 GGACACAGTTCTGGGATTTCGGAAGCTGACCCCCAGAGAGC GGACACAGTTCTGGGATTTTGGAAGCTGACCCCCAGAGAGC < 41bp 0.525019900840168 0.732260166689846 NA NA prediction 0.414480531699356 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109283279 chr12:109283278 nonsynonymous SNV 0.985 5 20 hm7G_associated_SNPs_31060 0 0 0 0 2 DAO chr12:109283321 5'GT 109283321 Upstream 44bp 28496 chrX 1460714 1460714 1 + C T READ 1460715 + 1460695 1460735 41 CTGCCCTGTCTCCTGCAAACGAAGGAAGGTAAGAACTGGAG CTGCCCTGTCTCCTGCAAATGAAGGAAGGTAAGAACTGGAG < 41bp 0.502435649154469 0.709675241618519 NA NA prediction 0.414479184928099 Functional Gain - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1460715 chrX:1460714 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_31061 0 0 0 0 2 IL3RA chrX:1460621 3'AG 1460621 Downstream 94bp 28497 chrX 1460714 1460714 1 + C T READ 1460715 + 1460695 1460735 41 CTGCCCTGTCTCCTGCAAACGAAGGAAGGTAAGAACTGGAG CTGCCCTGTCTCCTGCAAATGAAGGAAGGTAAGAACTGGAG < 41bp 0.502435649154469 0.709675241618519 NA NA prediction 0.414479184928099 Functional Gain - IL3RA ENSG00000185291 CDS Human protein_coding chrX:1460715 chrX:1460714 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_31061 0 0 0 0 2 IL3RA chrX:1460722 5'GT 1460722 Upstream 9bp 28498 chr15 91448716 91448716 1 + G A HNSC 91448717 + 91448697 91448737 41 CAGTTTGCTTTGGGGGGCCGGGGTCAGAAGCCAGAGCTGCA CAGTTTGCTTTGGGGGGCCAGGGTCAGAAGCCAGAGCTGCA < 41bp 0.499384238437136 0.70723744675358 NA NA prediction 0.414474893507159 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91448717 chr15:91448716 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_31062 0 0 1 0 1 MAN2A2 chr15:91448738 5'GT 91448738 Upstream 23bp 28499 chr11 558686 558686 1 - C T ESCA 558685 - 558665 558705 41 GAGATCCAGGCCTTGCGGTGGGCCATCCAGAATGGCGAGGA GAGATCCAGGCCTTGCGGTAGGCCATCCAGAATGGCGAGGA < 41bp 0.477249933591739 0.707236628502306 NA NA prediction 0.414473257004613 Functional Gain - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:558685 chr11:558686 stopgain 0.830 0 20 hm7G_associated_SNPs_31063 0 0 0 0 2 LMNTD2 chr11:558614 5'GT 558614 Upstream 73bp 28500 chr11 558686 558686 1 - C T ESCA 558685 - 558665 558705 41 GAGATCCAGGCCTTGCGGTGGGCCATCCAGAATGGCGAGGA GAGATCCAGGCCTTGCGGTAGGCCATCCAGAATGGCGAGGA < 41bp 0.477249933591739 0.707236628502306 NA NA prediction 0.414473257004613 Functional Gain - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:558685 chr11:558686 stopgain 0.830 0 20 hm7G_associated_SNPs_31063 0 0 0 0 2 LMNTD2 chr11:558766 3'AG 558766 Downstream 81bp 28501 chr1 22913108 22913108 1 + C T STAD 22913109 + 22913089 22913129 41 TACCGTGCAGCCCTGGACCCGCCGTCCTCAGCCTGCACCCG TACCGTGCAGCCCTGGACCTGCCGTCCTCAGCCTGCACCCG < 41bp 0.502606314951984 0.70984263048144 NA NA prediction 0.414472631058912 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22913109 chr1:22913108 nonsynonymous SNV 0.691 2 20 hm7G_associated_SNPs_31065 0 0 0 0 1 EPHA8 chr1:22913128 5'GT 22913128 Upstream 21bp 28502 chr11 119058114 119058114 1 + C T STAD 119058115 + 119058095 119058135 41 AGGCCCAGGGGTCCGGCCCCGGCTGTGCCACATAGTGAAAG AGGCCCAGGGGTCCGGCCCTGGCTGTGCCACATAGTGAAAG < 41bp 0.531345146703434 0.738579924638336 NA NA prediction 0.414469555869804 Functional Gain - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119058115 chr11:119058114 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_31069 0 0 0 0 1 PDZD3 chr11:119058168 5'GT 119058168 Upstream 55bp 28503 chr1 234509334 234509334 1 + G A rs113294015 234509335 + 234509315 234509355 41 CCCTGCAGTGGCAGGACTCGGCACCGCGCCCTCCACCGCCG CCCTGCAGTGGCAGGACTCAGCACCGCGCCCTCCACCGCCG < 41bp 0.507852850820674 0.715086510678417 NA NA prediction 0.414467319715487 Functional Gain - COA6 ENSG00000168275 CDS Human protein_coding chr1:234509335 chr1:234509334 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_31070 0 0 1 0 1 COA6 chr1:234509424 5'GT 234509424 Upstream 91bp 28504 chr16 27720175 27720175 1 + C T LUSC 27720176 + 27720156 27720196 41 AGCTTTATGTGTCGCCCCACGATGTGGATATCCGGAACACA AGCTTTATGTGTCGCCCCATGATGTGGATATCCGGAACACA < 41bp 0.528634006527534 0.735865278413705 NA NA prediction 0.414462543772342 Functional Gain - KIAA0556 ENSG00000047578 CDS Human other chr16:27720176 chr16:27720175 synonymous SNV . 0 20 hm7G_associated_SNPs_31071 0 0 0 0 1 KIAA0556 chr16:27720241 5'GT 27720241 Upstream 67bp 28505 chr1 18554475 18554475 1 + G A LUSC 18554476 + 18554456 18554496 41 GTGTAACTTCAAGACAGATGGGCGCATGCGGGAGATCGTGT GTGTAACTTCAAGACAGATAGGCGCATGCGGGAGATCGTGT < 41bp 0.489989707514761 0.707230747769589 NA NA prediction 0.414461495539179 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18554476 chr1:18554475 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_31072 0 0 0 0 2 IGSF21 chr1:18554392 3'AG 18554392 Downstream 84bp 28506 chr1 18554475 18554475 1 + G A LUSC 18554476 + 18554456 18554496 41 GTGTAACTTCAAGACAGATGGGCGCATGCGGGAGATCGTGT GTGTAACTTCAAGACAGATAGGCGCATGCGGGAGATCGTGT < 41bp 0.489989707514761 0.707230747769589 NA NA prediction 0.414461495539179 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18554476 chr1:18554475 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_31072 0 0 0 0 2 IGSF21 chr1:18554504 5'GT 18554504 Upstream 30bp 28507 chr2 11922625 11922625 1 + G T LUAD 11922626 + 11922606 11922646 41 AAGACGGATTCTCCTTCCAGGAAAAGAGGTACCAAGGCTGG AAGACGGATTCTCCTTCCATGAAAAGAGGTACCAAGGCTGG < 41bp 0.370361838903976 0.707230737595138 NA NA prediction 0.414461475190275 Functional Gain - LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11922626 chr2:11922625 nonsynonymous SNV 0.931 4 20 hm7G_associated_SNPs_31073 0 0 0 0 1 LPIN1 chr2:11922633 5'GT 11922633 Upstream 9bp 28508 chr3 33418781 33418781 1 + C T SKCM 33418782 + 33418762 33418802 41 CAGAATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACG CAGAATTTTGGAGGCTGCCTGATGCTCCCATTTGACTGACG < 41bp 0.492766926357505 0.707228027994489 NA NA prediction 0.414456055988977 Functional Gain - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33418782 chr3:33418781 stopgain 0.998 1 20 hm7G_associated_SNPs_31076 0 0 0 0 2 FBXL2 chr3:33418765 3'AG 33418765 Downstream 17bp 28509 chr3 33418781 33418781 1 + C T SKCM 33418782 + 33418762 33418802 41 CAGAATTTTGGAGGCTGCCCGATGCTCCCATTTGACTGACG CAGAATTTTGGAGGCTGCCTGATGCTCCCATTTGACTGACG < 41bp 0.492766926357505 0.707228027994489 NA NA prediction 0.414456055988977 Functional Gain - FBXL2 ENSG00000153558 CDS Human protein_coding chr3:33418782 chr3:33418781 stopgain 0.998 1 20 hm7G_associated_SNPs_31076 0 0 0 0 2 FBXL2 chr3:33418825 5'GT 33418825 Upstream 45bp 28510 chr19 17449816 17449816 1 + G A PAAD 17449817 + 17449797 17449837 41 GCGAGGATGACAACCTGGAGGAGGGGGTCCTGGAGCAAGGT GCGAGGATGACAACCTGGAAGAGGGGGTCCTGGAGCAAGGT < 41bp 0.549944963900502 0.7571721112909 NA NA prediction 0.414454294780795 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17449817 chr19:17449816 synonymous SNV . 0 20 hm7G_associated_SNPs_31077 0 0 1 0 2 GTPBP3 chr19:17449763 3'AG 17449763 Downstream 54bp 28511 chr19 17449816 17449816 1 + G A PAAD 17449817 + 17449797 17449837 41 GCGAGGATGACAACCTGGAGGAGGGGGTCCTGGAGCAAGGT GCGAGGATGACAACCTGGAAGAGGGGGTCCTGGAGCAAGGT < 41bp 0.549944963900502 0.7571721112909 NA NA prediction 0.414454294780795 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17449817 chr19:17449816 synonymous SNV . 0 20 hm7G_associated_SNPs_31077 0 0 1 0 2 GTPBP3 chr19:17449835 5'GT 17449835 Upstream 20bp 28512 chr1 162724598 162724598 1 + C T STAD 162724599 + 162724579 162724619 41 GTACAAGATCAATTACAGTCGGGATGGCACTCGCTGGATCT GTACAAGATCAATTACAGTTGGGATGGCACTCGCTGGATCT < 41bp 0.51913301690834 0.726354660864438 NA NA prediction 0.414443287912196 Functional Gain - DDR2 ENSG00000162733 CDS Human protein_coding chr1:162724599 chr1:162724598 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31079 0 0 1 0 1 DDR2 chr1:162724645 5'GT 162724645 Upstream 48bp 28513 chr17 18140989 18140989 1 + C T rs150635970 18140990 + 18140970 18141010 41 TGCCGCCAGCTGCTGTAACCGCTGTCACACTCCACACCGAG TGCCGCCAGCTGCTGTAACTGCTGTCACACTCCACACCGAG < 41bp 0.541513048194487 0.748731748186402 NA NA prediction 0.41443739998383 Functional Gain - LLGL1 ENSG00000131899 CDS Human protein_coding chr17:18140990 chr17:18140989 synonymous SNV . 0 20 hm7G_associated_SNPs_31080 0 0 1 0 1 LLGL1 chr17:18141087 5'GT 18141087 Upstream 99bp 28514 chr17 72346604 72346604 1 + C T SKCM 72346605 + 72346585 72346625 41 GACAGCTTCGGGAGCAGCTCGCCAGCGCCTTCCAGGAGCAG GACAGCTTCGGGAGCAGCTTGCCAGCGCCTTCCAGGAGCAG < 41bp 0.51148547086527 0.718703138747972 NA NA prediction 0.414435335765405 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72346605 chr17:72346604 synonymous SNV . 0 20 hm7G_associated_SNPs_31081 0 0 0 0 1 KIF19 chr17:72346540 3'AG 72346540 Downstream 65bp 28515 chr21 17199451 17199451 1 + C T LUSC 17199452 + 17199432 17199472 41 CCGGCACCAAGGCACATAACGGAGGAAGAACTTTCTGTGCT CCGGCACCAAGGCACATAATGGAGGAAGAACTTTCTGTGCT < 41bp 0.524879623185223 0.732094968785025 NA NA prediction 0.414430691199605 Functional Gain - USP25 ENSG00000155313 CDS Human protein_coding chr21:17199452 chr21:17199451 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_31082 0 0 1 0 1 USP25 chr21:17199522 5'GT 17199522 Upstream 72bp 28516 chr5 161116337 161116337 1 + G T LUAD 161116338 + 161116318 161116358 41 GCTTGTCCACTCAAGTTTGGGAGCTGTAAGTTACAACAGGC GCTTGTCCACTCAAGTTTGTGAGCTGTAAGTTACAACAGGC < 41bp 0.381905447502102 0.707213231331238 NA NA prediction 0.414426462662477 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116338 chr5:161116337 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31083 0 0 0 0 2 GABRA6 chr5:161116260 3'AG 161116260 Downstream 78bp 28517 chr5 161116337 161116337 1 + G T LUAD 161116338 + 161116318 161116358 41 GCTTGTCCACTCAAGTTTGGGAGCTGTAAGTTACAACAGGC GCTTGTCCACTCAAGTTTGTGAGCTGTAAGTTACAACAGGC < 41bp 0.381905447502102 0.707213231331238 NA NA prediction 0.414426462662477 Functional Gain - GABRA6 ENSG00000145863 CDS Human protein_coding chr5:161116338 chr5:161116337 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31083 0 0 0 0 2 GABRA6 chr5:161116342 5'GT 161116342 Upstream 6bp 28518 chr6 44147870 44147870 1 + G A GBM 44147871 + 44147851 44147891 41 GATGCTGACTTCCTGCTTCGGGTCTTCACCGAGAAGCACAG GATGCTGACTTCCTGCTTCAGGTCTTCACCGAGAAGCACAG < 41bp 0.495813957501336 0.707212134624928 NA NA prediction 0.414424269249857 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44147871 chr6:44147870 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_31085 0 0 0 0 1 CAPN11 chr6:44147900 5'GT 44147900 Upstream 31bp 28519 chr17 61619741 61619741 1 + G A LUSC 61619742 + 61619722 61619762 41 AGGTGCTGGACATGTACCCGGCCTTTGCGGAGAGCTTCTGG AGGTGCTGGACATGTACCCAGCCTTTGCGGAGAGCTTCTGG < 41bp 0.568482401771497 0.77569279847254 NA NA prediction 0.414420793402086 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61619742 chr17:61619741 synonymous SNV . 0 20 hm7G_associated_SNPs_31086 0 0 0 0 1 KCNH6 chr17:61619795 5'GT 61619795 Upstream 55bp 28520 chr7 780563 780563 1 + C T rs137860295 780564 + 780544 780584 41 TGCTCAGTAGCCTCAACGACGAGGTGCCTGAGGTCAGGTAC TGCTCAGTAGCCTCAACGATGAGGTGCCTGAGGTCAGGTAC < 41bp 0.498277871524623 0.707207583918146 NA NA prediction 0.414415167836292 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:780564 chr7:780563 synonymous SNV . 0 20 hm7G_associated_SNPs_31087 0 0 1 0 1 DNAAF5 chr7:780580 5'GT 780580 Upstream 18bp 28521 chr1 170940921 170940921 1 + G T MESO 170940922 + 170940902 170940942 41 CTCCATGTTTGGGTCTCCTGGCAGCAGAGCTGTCTCTTTTG CTCCATGTTTGGGTCTCCTTGCAGCAGAGCTGTCTCTTTTG < 41bp 0.370898205617702 0.707206729555131 NA NA prediction 0.414413459110261 Functional Gain - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170940922 chr1:170940921 synonymous SNV . 0 20 hm7G_associated_SNPs_31088 0 0 0 0 2 MROH9 chr1:170940889 3'AG 170940889 Downstream 33bp 28522 chr1 170940921 170940921 1 + G T MESO 170940922 + 170940902 170940942 41 CTCCATGTTTGGGTCTCCTGGCAGCAGAGCTGTCTCTTTTG CTCCATGTTTGGGTCTCCTTGCAGCAGAGCTGTCTCTTTTG < 41bp 0.370898205617702 0.707206729555131 NA NA prediction 0.414413459110261 Functional Gain - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170940922 chr1:170940921 synonymous SNV . 0 20 hm7G_associated_SNPs_31088 0 0 0 0 2 MROH9 chr1:170940894 3'AG 170940894 Downstream 28bp 28523 chr16 30594682 30594682 1 - C A LUSC 30594681 - 30594661 30594701 41 CGCATGAAGTGGCTGTCAAGGAGTGGTGGCCCAGCGTCGCC CGCATGAAGTGGCTGTCAATGAGTGGTGGCCCAGCGTCGCC < 41bp 0.372529501026776 0.707206203343918 NA NA prediction 0.414412406687836 Functional Gain - ZNF785 ENSG00000197162 CDS Human protein_coding chr16:30594681 chr16:30594682 nonsynonymous SNV 0.463 0 20 hm7G_associated_SNPs_31089 0 0 1 0 1 ZNF785 chr16:30594764 3'AG 30594764 Downstream 83bp 28524 chr2 74684951 74684951 1 + G A SKCM 74684952 + 74684932 74684972 41 AACCTGCAGATGCGGCTGGGGGGGCCCGAGGGTCCTGGATC AACCTGCAGATGCGGCTGGAGGGGCCCGAGGGTCCTGGATC < 41bp 0.518199742098276 0.725403949416328 NA NA prediction 0.414408414636104 Functional Gain - INO80B ENSG00000115274 CDS Human protein_coding chr2:74684952 chr2:74684951 nonsynonymous SNV 0.537 4 20 hm7G_associated_SNPs_31090 0 0 1 0 1 INO80B chr2:74684987 5'GT 74684987 Upstream 37bp 28525 chr19 35631511 35631511 1 + G T UCEC 35631512 + 35631492 35631532 41 TCTTTCCAGAAAGTCCAAAGGAACACGACCCGTTCACTTAC TCTTTCCAGAAAGTCCAAATGAACACGACCCGTTCACTTAC < 41bp 0.700449778319012 0.907653516510186 NA NA prediction 0.414407476382348 Functional Gain - FXYD1 ENSG00000266964 CDS Human protein_coding chr19:35631512 chr19:35631511 nonsynonymous SNV 0.922 0 20 hm7G_associated_SNPs_31091 0 0 1 0 2 FXYD1 chr19:35631501 3'AG 35631501 Downstream 11bp 28526 chr19 35631511 35631511 1 + G T UCEC 35631512 + 35631492 35631532 41 TCTTTCCAGAAAGTCCAAAGGAACACGACCCGTTCACTTAC TCTTTCCAGAAAGTCCAAATGAACACGACCCGTTCACTTAC < 41bp 0.700449778319012 0.907653516510186 NA NA prediction 0.414407476382348 Functional Gain - FXYD1 ENSG00000266964 CDS Human protein_coding chr19:35631512 chr19:35631511 nonsynonymous SNV 0.922 0 20 hm7G_associated_SNPs_31091 0 0 1 0 2 FXYD1 chr19:35631533 5'GT 35631533 Upstream 23bp 28527 chr16 4723503 4723503 1 + C T UCEC 4723504 + 4723484 4723524 41 CCCTTGTCCCGGCAGCCCTCGGACGACGAGAACAGCGACAA CCCTTGTCCCGGCAGCCCTTGGACGACGAGAACAGCGACAA < 41bp 0.496183076852326 0.707200182534054 NA NA prediction 0.414400365068109 Functional Gain - MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4723504 chr16:4723503 nonsynonymous SNV 0.062 1 20 hm7G_associated_SNPs_31093 0 0 1 0 1 MGRN1 chr16:4723499 3'AG 4723499 Downstream 5bp 28528 chr9 139848676 139848676 1 + G A CESC 139848677 + 139848657 139848697 41 GCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCCCA GCAGAGCTCAGGGCCTCTCAGATGACAACATCGTCTTCCCA < 41bp 0.509562012992868 0.716759593192498 NA NA prediction 0.414395160399261 Functional Gain - LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848677 chr9:139848676 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_31094 0 0 0 0 2 LCN12 chr9:139848606 3'AG 139848606 Downstream 71bp 28529 chr9 139848676 139848676 1 + G A CESC 139848677 + 139848657 139848697 41 GCAGAGCTCAGGGCCTCTCGGATGACAACATCGTCTTCCCA GCAGAGCTCAGGGCCTCTCAGATGACAACATCGTCTTCCCA < 41bp 0.509562012992868 0.716759593192498 NA NA prediction 0.414395160399261 Functional Gain - LCN12 ENSG00000184925 CDS Human protein_coding chr9:139848677 chr9:139848676 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_31094 0 0 0 0 2 LCN12 chr9:139848707 5'GT 139848707 Upstream 32bp 28530 chr1 117509582 117509582 1 + C T UCEC 117509583 + 117509563 117509603 41 CAAAGCCTTTCTTTGCTGCCGGAAATACATTTGAGATGACT CAAAGCCTTTCTTTGCTGCTGGAAATACATTTGAGATGACT < 41bp 0.530677682008078 0.737874089763502 NA NA prediction 0.414392815510847 Functional Gain - PTGFRN ENSG00000134247 CDS Human protein_coding chr1:117509583 chr1:117509582 synonymous SNV . 0 20 hm7G_associated_SNPs_31096 0 0 1 0 1 PTGFRN chr1:117509533 3'AG 117509533 Downstream 50bp 28531 chr19 15752395 15752395 1 + G T UCEC 15752396 + 15752376 15752416 41 TTCCCGCAACCCCCGAAACGGAATTGGTTCTTGGGTCACCT TTCCCGCAACCCCCGAAACTGAATTGGTTCTTGGGTCACCT < 41bp 0.382555637582126 0.707196301885537 NA NA prediction 0.414392603771074 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15752396 chr19:15752395 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_31097 0 0 1 0 1 CYP4F3 chr19:15752423 5'GT 15752423 Upstream 29bp 28532 chr11 70185380 70185380 1 + C T SKCM 70185381 + 70185361 70185401 41 GCGGCGCCCACAGAAAGGCCGGCTGGCAGCCCTGCGAGATG GCGGCGCCCACAGAAAGGCTGGCTGGCAGCCCTGCGAGATG < 41bp 0.509451700809141 0.716646957937027 NA NA prediction 0.414390514255772 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70185381 chr11:70185380 nonsynonymous SNV 0.924 3 20 hm7G_associated_SNPs_31098 0 0 0 0 1 PPFIA1 chr11:70185417 5'GT 70185417 Upstream 38bp 28533 chr17 7907247 7907247 1 + G A STAD 7907248 + 7907228 7907268 41 GGAGGCCGCAGAGGAGCTGGGCCTGACCGATGGCTCCCTGG GGAGGCCGCAGAGGAGCTGAGCCTGACCGATGGCTCCCTGG < 41bp 0.601648321887906 0.808842997531592 NA NA prediction 0.414389351287373 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7907248 chr17:7907247 nonsynonymous SNV 0.951 0 20 hm7G_associated_SNPs_31099 0 0 0 0 1 GUCY2D chr17:7907170 3'AG 7907170 Downstream 78bp 28534 chrX 18646617 18646617 1 + C T COAD 18646618 + 18646598 18646638 41 AAATTCCTTCTCAGAAATTCGGATTCACCCCCTGAGCCAGG AAATTCCTTCTCAGAAATTTGGATTCACCCCCTGAGCCAGG < 41bp 0.531164063447295 0.738358655152989 NA NA prediction 0.414389183411389 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18646618 chrX:18646617 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31100 0 0 0 0 1 CDKL5 chrX:18646707 5'GT 18646707 Upstream 91bp 28535 chr19 54395835 54395835 1 + C T PRAD 54395836 + 54395816 54395856 41 GGGACCGGACCTCCCGCAACGACTTCATGGGGGCCATGTCC GGGACCGGACCTCCCGCAATGACTTCATGGGGGCCATGTCC < 41bp 0.495348932600482 0.707194045249391 NA NA prediction 0.414388090498782 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54395836 chr19:54395835 synonymous SNV . 0 20 hm7G_associated_SNPs_31102 0 0 0 0 2 PRKCG chr19:54395763 3'AG 54395763 Downstream 73bp 28536 chr19 54395835 54395835 1 + C T PRAD 54395836 + 54395816 54395856 41 GGGACCGGACCTCCCGCAACGACTTCATGGGGGCCATGTCC GGGACCGGACCTCCCGCAATGACTTCATGGGGGCCATGTCC < 41bp 0.495348932600482 0.707194045249391 NA NA prediction 0.414388090498782 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54395836 chr19:54395835 synonymous SNV . 0 20 hm7G_associated_SNPs_31102 0 0 0 0 2 PRKCG chr19:54395897 5'GT 54395897 Upstream 63bp 28537 chr12 109949058 109949058 1 + C T UCEC 109949059 + 109949039 109949079 41 ACTCGACAGGGACAGAAAACGGGCACAGTTGATCCTGCAGT ACTCGACAGGGACAGAAAATGGGCACAGTTGATCCTGCAGT < 41bp 0.518947210171996 0.726141013501702 NA NA prediction 0.414387606659412 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109949059 chr12:109949058 nonsynonymous SNV 0.618 3 20 hm7G_associated_SNPs_31103 0 0 1 0 2 UBE3B chr12:109949009 3'AG 109949009 Downstream 50bp 28538 chr12 109949058 109949058 1 + C T UCEC 109949059 + 109949039 109949079 41 ACTCGACAGGGACAGAAAACGGGCACAGTTGATCCTGCAGT ACTCGACAGGGACAGAAAATGGGCACAGTTGATCCTGCAGT < 41bp 0.518947210171996 0.726141013501702 NA NA prediction 0.414387606659412 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109949059 chr12:109949058 nonsynonymous SNV 0.618 3 20 hm7G_associated_SNPs_31103 0 0 1 0 2 UBE3B chr12:109949108 5'GT 109949108 Upstream 51bp 28539 chr2 201524747 201524747 1 + C T SKCM 201524748 + 201524728 201524768 41 AAACTCTTCTAAAACGCCTCGAACCCATCATCAGCAAGAAT AAACTCTTCTAAAACGCCTTGAACCCATCATCAGCAAGAAT < 41bp 0.522938938846399 0.730132336957653 NA NA prediction 0.414386796222508 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201524748 chr2:201524747 synonymous SNV . 0 20 hm7G_associated_SNPs_31104 0 0 0 0 2 AOX1 chr2:201524718 3'AG 201524718 Downstream 30bp 28540 chr2 201524747 201524747 1 + C T SKCM 201524748 + 201524728 201524768 41 AAACTCTTCTAAAACGCCTCGAACCCATCATCAGCAAGAAT AAACTCTTCTAAAACGCCTTGAACCCATCATCAGCAAGAAT < 41bp 0.522938938846399 0.730132336957653 NA NA prediction 0.414386796222508 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201524748 chr2:201524747 synonymous SNV . 0 20 hm7G_associated_SNPs_31104 0 0 0 0 2 AOX1 chr2:201524792 5'GT 201524792 Upstream 46bp 28541 chr5 112902821 112902821 1 + C T COAD 112902822 + 112902802 112902842 41 ACGAGGTGGTGGTGACATTCGGGACGTTAACACAAACTCTG ACGAGGTGGTGGTGACATTTGGGACGTTAACACAAACTCTG < 41bp 0.510216363395901 0.717409151868388 NA NA prediction 0.414385576944975 Functional Gain - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112902822 chr5:112902821 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31105 0 0 1 0 1 YTHDC2 chr5:112902789 3'AG 112902789 Downstream 33bp 28542 chr16 10995407 10995407 1 + G A SKCM 10995408 + 10995388 10995428 41 CCGGCAGACCTGAAGCACTGGAAGCCAGGTGTGCAGGGCAG CCGGCAGACCTGAAGCACTAGAAGCCAGGTGTGCAGGGCAG < 41bp 0.530568481756693 0.737760310135997 NA NA prediction 0.414383656758609 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10995408 chr16:10995407 stopgain 0.422 0 20 hm7G_associated_SNPs_31106 0 0 0 0 2 CIITA chr16:10995371 3'AG 10995371 Downstream 37bp 28543 chr16 10995407 10995407 1 + G A SKCM 10995408 + 10995388 10995428 41 CCGGCAGACCTGAAGCACTGGAAGCCAGGTGTGCAGGGCAG CCGGCAGACCTGAAGCACTAGAAGCCAGGTGTGCAGGGCAG < 41bp 0.530568481756693 0.737760310135997 NA NA prediction 0.414383656758609 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10995408 chr16:10995407 stopgain 0.422 0 20 hm7G_associated_SNPs_31106 0 0 0 0 2 CIITA chr16:10995415 5'GT 10995415 Upstream 9bp 28544 chr10 102510510 102510510 1 + C T UCEC 102510511 + 102510491 102510531 41 GGCTCCAAGCCCAAAGTGGCGACGCCCAAAGTGGTGGACAA GGCTCCAAGCCCAAAGTGGTGACGCCCAAAGTGGTGGACAA < 41bp 0.520161315484807 0.727350690290989 NA NA prediction 0.414378749612365 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102510511 chr10:102510510 nonsynonymous SNV 0.961 5 20 hm7G_associated_SNPs_31108 0 0 0 0 1 PAX2 chr10:102510451 3'AG 102510451 Downstream 60bp 28545 chr16 85105476 85105476 1 + C T UCEC 85105477 + 85105457 85105497 41 GGGAGTGGTTTGCTCGATACGTGAGTGCCCAGGTAAGGGCG GGGAGTGGTTTGCTCGATATGTGAGTGCCCAGGTAAGGGCG < 41bp 0.501397505002371 0.708585176241407 NA NA prediction 0.414375342478073 Functional Gain - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85105477 chr16:85105476 synonymous SNV . 0 20 hm7G_associated_SNPs_31110 0 0 1 0 2 KIAA0513 chr16:85105389 3'AG 85105389 Downstream 88bp 28546 chr16 85105476 85105476 1 + C T UCEC 85105477 + 85105457 85105497 41 GGGAGTGGTTTGCTCGATACGTGAGTGCCCAGGTAAGGGCG GGGAGTGGTTTGCTCGATATGTGAGTGCCCAGGTAAGGGCG < 41bp 0.501397505002371 0.708585176241407 NA NA prediction 0.414375342478073 Functional Gain - KIAA0513 ENSG00000135709 CDS Human protein_coding chr16:85105477 chr16:85105476 synonymous SNV . 0 20 hm7G_associated_SNPs_31110 0 0 1 0 2 KIAA0513 chr16:85105488 5'GT 85105488 Upstream 13bp 28547 chr6 25538148 25538148 1 + C T STAD 25538149 + 25538129 25538169 41 TACGAAATTGTGGGGGAGACGCTATCCAGGAAGATTTAAAA TACGAAATTGTGGGGGAGATGCTATCCAGGAAGATTTAAAA < 41bp 0.526016454166212 0.733202640994458 NA NA prediction 0.414372373656492 Functional Gain - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25538149 chr6:25538148 synonymous SNV . 0 20 hm7G_associated_SNPs_31111 0 0 0 0 2 CARMIL1 chr6:25538083 3'AG 25538083 Downstream 66bp 28548 chr6 25538148 25538148 1 + C T STAD 25538149 + 25538129 25538169 41 TACGAAATTGTGGGGGAGACGCTATCCAGGAAGATTTAAAA TACGAAATTGTGGGGGAGATGCTATCCAGGAAGATTTAAAA < 41bp 0.526016454166212 0.733202640994458 NA NA prediction 0.414372373656492 Functional Gain - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25538149 chr6:25538148 synonymous SNV . 0 20 hm7G_associated_SNPs_31111 0 0 0 0 2 CARMIL1 chr6:25538211 5'GT 25538211 Upstream 64bp 28549 chr1 3786245 3786245 1 + G A rs12738235 3786246 + 3786226 3786266 41 CTCGGCTCCATGTGCCAGAGGCTCCGGTCCATGCAGTACAA CTCGGCTCCATGTGCCAGAAGCTCCGGTCCATGCAGTACAA < 41bp 0.54502580472326 0.752210683555859 NA NA prediction 0.414369757665199 Functional Gain - DFFB ENSG00000169598 CDS Human protein_coding chr1:3786246 chr1:3786245 nonsynonymous SNV 0.389 0 20 hm7G_associated_SNPs_31112 0 0 0 0 2 DFFB chr1:3786169 3'AG 3786169 Downstream 77bp 28550 chr1 3786245 3786245 1 + G A rs12738235 3786246 + 3786226 3786266 41 CTCGGCTCCATGTGCCAGAGGCTCCGGTCCATGCAGTACAA CTCGGCTCCATGTGCCAGAAGCTCCGGTCCATGCAGTACAA < 41bp 0.54502580472326 0.752210683555859 NA NA prediction 0.414369757665199 Functional Gain - DFFB ENSG00000169598 CDS Human protein_coding chr1:3786246 chr1:3786245 nonsynonymous SNV 0.389 0 20 hm7G_associated_SNPs_31112 0 0 0 0 2 DFFB chr1:3786339 5'GT 3786339 Upstream 95bp 28551 chr10 1149723 1149723 1 + G T LIHC 1149724 + 1149704 1149744 41 GTGACTGCCTCCTGGGACCGGACGGCAAACCTGTACGACGT GTGACTGCCTCCTGGGACCTGACGGCAAACCTGTACGACGT < 41bp 0.365343402705066 0.707183150007352 NA NA prediction 0.414366300014704 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1149724 chr10:1149723 nonsynonymous SNV 0.410 4 20 hm7G_associated_SNPs_31114 0 0 0 0 1 WDR37 chr10:1149776 5'GT 1149776 Upstream 54bp 28552 chrX 70618477 70618477 1 + C T UCEC 70618478 + 70618458 70618498 41 AGAGATGCGAAAAGAACGGCGGAGGATTCAAGAGCAACTGA AGAGATGCGAAAAGAACGGTGGAGGATTCAAGAGCAACTGA < 41bp 0.505567858118021 0.712750515612892 NA NA prediction 0.414365314989742 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70618478 chrX:70618477 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31115 1 0 1 0 1 TAF1 chrX:70618422 3'AG 70618422 Downstream 56bp 28553 chr3 138186974 138186974 1 + G A rs6772467 138186975 + 138186955 138186995 41 CCTGAATGACACAACCAGCGGGCGGCTGCACCTGCGGCTGG CCTGAATGACACAACCAGCAGGCGGCTGCACCTGCGGCTGG < 41bp 0.536767587779398 0.743949886328652 NA NA prediction 0.414364597098507 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138186975 chr3:138186974 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_31116 0 0 0 0 2 ESYT3 chr3:138186947 3'AG 138186947 Downstream 28bp 28554 chr3 138186974 138186974 1 + G A rs6772467 138186975 + 138186955 138186995 41 CCTGAATGACACAACCAGCGGGCGGCTGCACCTGCGGCTGG CCTGAATGACACAACCAGCAGGCGGCTGCACCTGCGGCTGG < 41bp 0.536767587779398 0.743949886328652 NA NA prediction 0.414364597098507 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138186975 chr3:138186974 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_31116 0 0 0 0 2 ESYT3 chr3:138187036 5'GT 138187036 Upstream 63bp 28555 chr16 56914117 56914117 1 + C T COAD 56914118 + 56914098 56914138 41 CAAGAACAAGGAGCCCGTGCGTGGCTACCTGCTGGCCTACG CAAGAACAAGGAGCCCGTGTGTGGCTACCTGCTGGCCTACG < 41bp 0.510101053219132 0.71728229659285 NA NA prediction 0.414362486747435 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56914118 chr16:56914117 nonsynonymous SNV 0.441 5 20 hm7G_associated_SNPs_31117 0 0 0 0 2 SLC12A3 chr16:56914042 3'AG 56914042 Downstream 76bp 28556 chr16 56914117 56914117 1 + C T COAD 56914118 + 56914098 56914138 41 CAAGAACAAGGAGCCCGTGCGTGGCTACCTGCTGGCCTACG CAAGAACAAGGAGCCCGTGTGTGGCTACCTGCTGGCCTACG < 41bp 0.510101053219132 0.71728229659285 NA NA prediction 0.414362486747435 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56914118 chr16:56914117 nonsynonymous SNV 0.441 5 20 hm7G_associated_SNPs_31117 0 0 0 0 2 SLC12A3 chr16:56914165 5'GT 56914165 Upstream 49bp 28557 chr8 25209304 25209304 1 + C T SKCM 25209305 + 25209285 25209325 41 GCTGCTGAGAAGGATCAACCGGACAGTGATTGGGATGAACC GCTGCTGAGAAGGATCAACTGGACAGTGATTGGGATGAACC < 41bp 0.536434585506694 0.743611919507699 NA NA prediction 0.414354668002009 Functional Gain - DOCK5 ENSG00000147459 CDS Human protein_coding chr8:25209305 chr8:25209304 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_31119 0 0 1 0 1 DOCK5 chr8:25209342 5'GT 25209342 Upstream 39bp 28558 chr16 67650676 67650676 1 + C T STAD 67650677 + 67650657 67650697 41 CTCACAAGTGCCCAGACTGCGACATGGCCTTTGTGACCAGT CTCACAAGTGCCCAGACTGTGACATGGCCTTTGTGACCAGT < 41bp 0.526366570216205 0.733542812307096 NA NA prediction 0.414352484181782 Functional Gain - CTCF ENSG00000102974 CDS Human protein_coding chr16:67650677 chr16:67650676 synonymous SNV . 0 20 hm7G_associated_SNPs_31120 0 0 1 0 1 CTCF chr16:67650648 3'AG 67650648 Downstream 29bp 28559 chr2 69002542 69002542 1 + C T COAD 69002543 + 69002523 69002563 41 TACAAGGATGAAGAGGACACGAAGCCCCAGGTACCAGCCAG TACAAGGATGAAGAGGACATGAAGCCCCAGGTACCAGCCAG < 41bp 0.529400852238034 0.736576861502647 NA NA prediction 0.414352018529226 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002543 chr2:69002542 nonsynonymous SNV 0.696 1 20 hm7G_associated_SNPs_31121 0 0 0 0 1 ARHGAP25 chr2:69002552 5'GT 69002552 Upstream 11bp 28560 chr12 4702297 4702297 1 + C T BLCA 4702298 + 4702278 4702318 41 CCTGAGAAATTTAGCAAGACGAGTTTTGATGATGAGCATGG CCTGAGAAATTTAGCAAGATGAGTTTTGATGATGAGCATGG < 41bp 0.523969042475474 0.731145041087026 NA NA prediction 0.414351997223104 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4702298 chr12:4702297 nonsynonymous SNV 0.577 0 20 hm7G_associated_SNPs_31122 0 0 1 0 1 DYRK4 chr12:4702331 5'GT 4702331 Upstream 35bp 28561 chr1 155582013 155582013 1 + G A SKCM 155582014 + 155581994 155582034 41 CTGCACGATGGCTTCTCTGGGGTAGGCGCGAAGGCGGCAGA CTGCACGATGGCTTCTCTGAGGTAGGCGCGAAGGCGGCAGA < 41bp 0.550433811189557 0.757609566519663 NA NA prediction 0.414351510660211 Functional Gain - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582014 chr1:155582013 nonsynonymous SNV 0.967 5 20 hm7G_associated_SNPs_31123 0 0 0 0 2 MSTO1 chr1:155581973 3'AG 155581973 Downstream 41bp 28562 chr1 155582013 155582013 1 + G A SKCM 155582014 + 155581994 155582034 41 CTGCACGATGGCTTCTCTGGGGTAGGCGCGAAGGCGGCAGA CTGCACGATGGCTTCTCTGAGGTAGGCGCGAAGGCGGCAGA < 41bp 0.550433811189557 0.757609566519663 NA NA prediction 0.414351510660211 Functional Gain - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582014 chr1:155582013 nonsynonymous SNV 0.967 5 20 hm7G_associated_SNPs_31123 0 0 0 0 2 MSTO1 chr1:155582107 5'GT 155582107 Upstream 95bp 28563 chr18 12009897 12009897 1 + G T SARC 12009898 + 12009878 12009918 41 GCAGGTTCATTGCAGAAGAGGCCGCGGCTTCTGGGGCCAAG GCAGGTTCATTGCAGAAGATGCCGCGGCTTCTGGGGCCAAG < 41bp 0.705221631764492 0.912394423691529 NA NA prediction 0.414345583854073 Functional Gain - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12009898 chr18:12009897 nonsynonymous SNV 0.718 4 20 hm7G_associated_SNPs_31125 0 0 1 0 2 IMPA2 chr18:12009882 3'AG 12009882 Downstream 16bp 28564 chr18 12009897 12009897 1 + G T SARC 12009898 + 12009878 12009918 41 GCAGGTTCATTGCAGAAGAGGCCGCGGCTTCTGGGGCCAAG GCAGGTTCATTGCAGAAGATGCCGCGGCTTCTGGGGCCAAG < 41bp 0.705221631764492 0.912394423691529 NA NA prediction 0.414345583854073 Functional Gain - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12009898 chr18:12009897 nonsynonymous SNV 0.718 4 20 hm7G_associated_SNPs_31125 0 0 1 0 2 IMPA2 chr18:12009986 5'GT 12009986 Upstream 90bp 28565 chr17 79427355 79427355 1 + C T rs114502458 79427356 + 79427336 79427376 41 CAGTAGTGGTGGAATTTGACGATGGGGATACAGGCCACATC CAGTAGTGGTGGAATTTGATGATGGGGATACAGGCCACATC < 41bp 0.523054623746095 0.730226927460318 NA NA prediction 0.414344607428445 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79427356 chr17:79427355 synonymous SNV . 0 20 hm7G_associated_SNPs_31126 0 0 1 0 1 BAHCC1 chr17:79427303 3'AG 79427303 Downstream 53bp 28566 chrX 2942157 2942157 1 + G A SKCM 2942158 + 2942138 2942178 41 CCACCTGGAGCCCCTGGACGGGGCTGTTCAGCTGGGTGGCT CCACCTGGAGCCCCTGGACAGGGCTGTTCAGCTGGGTGGCT < 41bp 0.555602235939363 0.762770607944109 NA NA prediction 0.414336744009492 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2942158 chrX:2942157 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_31130 0 0 0 0 2 ARSH chrX:2942062 3'AG 2942062 Downstream 96bp 28567 chrX 2942157 2942157 1 + G A SKCM 2942158 + 2942138 2942178 41 CCACCTGGAGCCCCTGGACGGGGCTGTTCAGCTGGGTGGCT CCACCTGGAGCCCCTGGACAGGGCTGTTCAGCTGGGTGGCT < 41bp 0.555602235939363 0.762770607944109 NA NA prediction 0.414336744009492 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2942158 chrX:2942157 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_31130 0 0 0 0 2 ARSH chrX:2942196 5'GT 2942196 Upstream 40bp 28568 chr17 8159873 8159873 1 + C T GBM 8159874 + 8159854 8159894 41 AAAGGAAGTCCGATTCCTACGGCCTGAGGACCCCACACGGC AAAGGAAGTCCGATTCCTATGGCCTGAGGACCCCACACGGC < 41bp 0.534487507409502 0.74165533588239 NA NA prediction 0.414335656945777 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159874 chr17:8159873 nonsynonymous SNV 0.480 0 20 hm7G_associated_SNPs_31131 0 0 1 0 2 PFAS chr17:8159842 3'AG 8159842 Downstream 32bp 28569 chr17 8159873 8159873 1 + C T GBM 8159874 + 8159854 8159894 41 AAAGGAAGTCCGATTCCTACGGCCTGAGGACCCCACACGGC AAAGGAAGTCCGATTCCTATGGCCTGAGGACCCCACACGGC < 41bp 0.534487507409502 0.74165533588239 NA NA prediction 0.414335656945777 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8159874 chr17:8159873 nonsynonymous SNV 0.480 0 20 hm7G_associated_SNPs_31131 0 0 1 0 2 PFAS chr17:8159966 5'GT 8159966 Upstream 94bp 28570 chr20 31421642 31421642 1 + G T UCEC 31421643 + 31421623 31421663 41 CTTCAAAATACTACAAGCAGGTTTTAAGAGAATGGGTGTTG CTTCAAAATACTACAAGCATGTTTTAAGAGAATGGGTGTTG < 41bp 0.687414375497414 0.894581763487376 NA NA prediction 0.414334775979924 Functional Gain - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31421643 chr20:31421642 nonsynonymous SNV 0.925 4 20 hm7G_associated_SNPs_31132 0 0 1 0 1 MAPRE1 chr20:31421668 5'GT 31421668 Upstream 27bp 28571 chr6 161529865 161529865 1 + C T UCEC 161529866 + 161529846 161529886 41 CAAACACCCCAATCTGGTTCGGTATTTTGGTGTGGAGCTCC CAAACACCCCAATCTGGTTTGGTATTTTGGTGTGGAGCTCC < 41bp 0.519352548290201 0.726519783007813 NA NA prediction 0.414334469435223 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161529866 chr6:161529865 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31133 0 0 0 0 1 MAP3K4 chr6:161529775 3'AG 161529775 Downstream 91bp 28572 chr22 29704164 29704164 1 + G A rs142849497 29704165 + 29704145 29704185 41 GGCCATTTCGCTCCAGTGAGGCCTACGTGGAGGCCATGAAG GGCCATTTCGCTCCAGTGAAGCCTACGTGGAGGCCATGAAG < 41bp 0.559369979802705 0.76653694242049 NA NA prediction 0.414333925235569 Functional Gain - GAS2L1 ENSG00000185340 CDS Human protein_coding chr22:29704165 chr22:29704164 synonymous SNV . 0 20 hm7G_associated_SNPs_31135 0 0 0 0 1 GAS2L1 chr22:29704077 3'AG 29704077 Downstream 88bp 28573 chr16 57091998 57091998 1 + C T PAAD 57091999 + 57091979 57092019 41 TCTCAGCAAACCTGCTGGGCGACAGCGGACTCAGATGCCTT TCTCAGCAAACCTGCTGGGTGACAGCGGACTCAGATGCCTT < 41bp 0.506865223652399 0.714030476757105 NA NA prediction 0.414330506209412 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57091999 chr16:57091998 synonymous SNV . 0 20 hm7G_associated_SNPs_31138 0 0 0 0 2 NLRC5 chr16:57091977 3'AG 57091977 Downstream 22bp 28574 chr16 57091998 57091998 1 + C T PAAD 57091999 + 57091979 57092019 41 TCTCAGCAAACCTGCTGGGCGACAGCGGACTCAGATGCCTT TCTCAGCAAACCTGCTGGGTGACAGCGGACTCAGATGCCTT < 41bp 0.506865223652399 0.714030476757105 NA NA prediction 0.414330506209412 Functional Gain - NLRC5 ENSG00000140853 CDS Human protein_coding chr16:57091999 chr16:57091998 synonymous SNV . 0 20 hm7G_associated_SNPs_31138 0 0 0 0 2 NLRC5 chr16:57092060 5'GT 57092060 Upstream 63bp 28575 chr1 212521816 212521816 1 + G T UCEC 212521817 + 212521797 212521837 41 TCCTATGCATACTGCAAAAGGATTAGCTTTGTTTCATGCTC TCCTATGCATACTGCAAAATGATTAGCTTTGTTTCATGCTC < 41bp 0.379488727350257 0.707160125146976 NA NA prediction 0.414320250293952 Functional Gain - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212521817 chr1:212521816 stopgain 1.000 1 20 hm7G_associated_SNPs_31140 0 0 0 0 2 PPP2R5A chr1:212521731 3'AG 212521731 Downstream 86bp 28576 chr1 212521816 212521816 1 + G T UCEC 212521817 + 212521797 212521837 41 TCCTATGCATACTGCAAAAGGATTAGCTTTGTTTCATGCTC TCCTATGCATACTGCAAAATGATTAGCTTTGTTTCATGCTC < 41bp 0.379488727350257 0.707160125146976 NA NA prediction 0.414320250293952 Functional Gain - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212521817 chr1:212521816 stopgain 1.000 1 20 hm7G_associated_SNPs_31140 0 0 0 0 2 PPP2R5A chr1:212521839 5'GT 212521839 Upstream 24bp 28577 chr6 43126631 43126631 1 + C T PRAD 43126632 + 43126612 43126652 41 GTGCATAAGGACTTGGCTGCGCGTAACTGCCTGGTCAGTGC GTGCATAAGGACTTGGCTGTGCGTAACTGCCTGGTCAGTGC < 41bp 0.493983199070425 0.707149267087444 NA NA prediction 0.414298534174887 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43126632 chr6:43126631 nonsynonymous SNV 0.775 5 20 hm7G_associated_SNPs_31142 0 0 1 0 2 PTK7 chr6:43126555 3'AG 43126555 Downstream 77bp 28578 chr6 43126631 43126631 1 + C T PRAD 43126632 + 43126612 43126652 41 GTGCATAAGGACTTGGCTGCGCGTAACTGCCTGGTCAGTGC GTGCATAAGGACTTGGCTGTGCGTAACTGCCTGGTCAGTGC < 41bp 0.493983199070425 0.707149267087444 NA NA prediction 0.414298534174887 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43126632 chr6:43126631 nonsynonymous SNV 0.775 5 20 hm7G_associated_SNPs_31142 0 0 1 0 2 PTK7 chr6:43126706 5'GT 43126706 Upstream 76bp 28579 chr5 134033702 134033702 1 + C T UCEC 134033703 + 134033683 134033723 41 ACTACAGAGATACCTTACTCGGAAGATTGGCTTTGAGGCAG ACTACAGAGATACCTTACTTGGAAGATTGGCTTTGAGGCAG < 41bp 0.496128654237354 0.707147429000049 NA NA prediction 0.414294858000097 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134033703 chr5:134033702 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31143 0 0 1 0 1 SEC24A chr5:134033747 5'GT 134033747 Upstream 46bp 28580 chr1 65113564 65113564 1 + C T COAD 65113565 + 65113545 65113585 41 GAAGTACGGTGTGCCAGACCGGATGGCCTTGCCTGTGATTA GAAGTACGGTGTGCCAGACTGGATGGCCTTGCCTGTGATTA < 41bp 0.537477208377016 0.744622396534394 NA NA prediction 0.414290376314756 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65113565 chr1:65113564 nonsynonymous SNV 0.800 3 20 hm7G_associated_SNPs_31145 0 0 0 0 1 CACHD1 chr1:65113484 3'AG 65113484 Downstream 81bp 28581 chr1 1390850 1390850 1 + G A UCEC 1390851 + 1390831 1390871 41 CCCCTCCAGCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCA CCCCTCCAGCAGGTCAGCCAGCGGCTCCTCAGTCGACCCCA < 41bp 0.575906264862288 0.783050708346757 NA NA prediction 0.414288886968937 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1390851 chr1:1390850 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_31146 0 0 0 0 1 ATAD3C chr1:1390840 3'AG 1390840 Downstream 11bp 28582 chr19 47768090 47768090 1 + G A rs201111116 47768091 + 47768071 47768111 41 CGACCCCCGGCGACGCAGCGGGCCCCTGGAGGAGTCTGAGC CGACCCCCGGCGACGCAGCAGGCCCCTGGAGGAGTCTGAGC < 41bp 0.581022165935802 0.788166406186922 NA NA prediction 0.41428848050224 Functional Gain - CCDC9 ENSG00000105321 CDS Human protein_coding chr19:47768091 chr19:47768090 nonsynonymous SNV 0.402 4 20 hm7G_associated_SNPs_31147 0 0 1 0 1 CCDC9 chr19:47768030 3'AG 47768030 Downstream 61bp 28583 chr6 151857487 151857487 1 + C T HNSC 151857488 + 151857468 151857508 41 CTTTCGGAAGTCCCGGTCACGCGGGAGCAGTTAAACCACTA CTTTCGGAAGTCCCGGTCATGCGGGAGCAGTTAAACCACTA < 41bp 0.526410984701699 0.733551784402873 NA NA prediction 0.414281599402348 Functional Gain - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151857488 chr6:151857487 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_31148 0 0 0 0 2 CCDC170 chr6:151857453 3'AG 151857453 Downstream 35bp 28584 chr6 151857487 151857487 1 + C T HNSC 151857488 + 151857468 151857508 41 CTTTCGGAAGTCCCGGTCACGCGGGAGCAGTTAAACCACTA CTTTCGGAAGTCCCGGTCATGCGGGAGCAGTTAAACCACTA < 41bp 0.526410984701699 0.733551784402873 NA NA prediction 0.414281599402348 Functional Gain - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151857488 chr6:151857487 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_31148 0 0 0 0 2 CCDC170 chr6:151857581 5'GT 151857581 Upstream 95bp 28585 chr5 139189324 139189324 1 + G A GBM 139189325 + 139189305 139189345 41 GCGGAGTCCAGGCCCTGGAGGGCTGGCGTGCTGGCAGAGGG GCGGAGTCCAGGCCCTGGAAGGCTGGCGTGCTGGCAGAGGG < 41bp 0.484746270139976 0.707139723711983 NA NA prediction 0.414279447423966 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139189325 chr5:139189324 nonsynonymous SNV 0.130 1 20 hm7G_associated_SNPs_31149 0 0 0 0 1 PSD2 chr5:139189396 5'GT 139189396 Upstream 73bp 28586 chr16 1813673 1813673 1 + C T UCEC 1813674 + 1813654 1813694 41 TCAGCGACTGCACGTCCTCCGCCCGTCGAGAGCAGAAGCGC TCAGCGACTGCACGTCCTCTGCCCGTCGAGAGCAGAAGCGC < 41bp 0.510600199873138 0.717738706182488 NA NA prediction 0.4142770126187 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1813674 chr16:1813673 synonymous SNV . 0 20 hm7G_associated_SNPs_31150 0 0 1 0 1 MAPK8IP3 chr16:1813658 3'AG 1813658 Downstream 16bp 28587 chr6 43222808 43222808 1 + C T SKCM 43222809 + 43222789 43222829 41 TCGGAATGTGGCCGGGTTTCGAGGAACGGTTCGCTATGCCT TCGGAATGTGGCCGGGTTTTGAGGAACGGTTCGCTATGCCT < 41bp 0.496710757886246 0.707137868664056 NA NA prediction 0.414275737328112 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222809 chr6:43222808 stopgain 0.998 1 20 hm7G_associated_SNPs_31152 0 0 0 0 2 TTBK1 chr6:43222787 3'AG 43222787 Downstream 22bp 28588 chr6 43222808 43222808 1 + C T SKCM 43222809 + 43222789 43222829 41 TCGGAATGTGGCCGGGTTTCGAGGAACGGTTCGCTATGCCT TCGGAATGTGGCCGGGTTTTGAGGAACGGTTCGCTATGCCT < 41bp 0.496710757886246 0.707137868664056 NA NA prediction 0.414275737328112 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222809 chr6:43222808 stopgain 0.998 1 20 hm7G_associated_SNPs_31152 0 0 0 0 2 TTBK1 chr6:43222852 5'GT 43222852 Upstream 45bp 28589 chr19 39759422 39759422 1 + G A LUAD 39759423 + 39759403 39759443 41 GGGGCTCTCCCGGATGCAAGGGGCTGCCACATAGCCCAGTT GGGGCTCTCCCGGATGCAAAGGGCTGCCACATAGCCCAGTT < 41bp 0.469407819022336 0.707135219663362 NA NA prediction 0.414270439326724 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39759423 chr19:39759422 nonsynonymous SNV 0.134 0 20 hm7G_associated_SNPs_31155 0 0 0 0 1 IFNL2 chr19:39759498 5'GT 39759498 Upstream 77bp 28590 chr22 39770341 39770341 1 + C T UCEC 39770342 + 39770322 39770362 41 TGTTCTCCATAGTGGTGTTCGGCTCCATCGTGAACGAGGGC TGTTCTCCATAGTGGTGTTTGGCTCCATCGTGAACGAGGGC < 41bp 0.498518313911726 0.707134905088166 NA NA prediction 0.414269810176332 Functional Gain - SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39770342 chr22:39770341 synonymous SNV . 0 20 hm7G_associated_SNPs_31156 0 0 1 0 1 SYNGR1 chr22:39770321 3'AG 39770321 Downstream 21bp 28591 chr9 72833303 72833303 1 + C T UCEC 72833304 + 72833284 72833324 41 GGTGTATGGACAAAAAGCACGCCTCTTGTCCAGGCCTCTGC GGTGTATGGACAAAAAGCATGCCTCTTGTCCAGGCCTCTGC < 41bp 0.519825654639942 0.726960235518508 NA NA prediction 0.414269161757133 Functional Gain - MAMDC2 ENSG00000165072 CDS Human protein_coding chr9:72833304 chr9:72833303 nonsynonymous SNV 0.690 2 20 hm7G_associated_SNPs_31157 0 0 0 0 1 MAMDC2 chr9:72833253 3'AG 72833253 Downstream 51bp 28592 chr1 153750715 153750715 1 + C T UCEC 153750716 + 153750696 153750736 41 TACCTGGGAGCGTTTTGTGCGGCGCTTCGGGCCCCTGCAGG TACCTGGGAGCGTTTTGTGTGGCGCTTCGGGCCCCTGCAGG < 41bp 0.531594685692172 0.73872904174489 NA NA prediction 0.414268712105435 Functional Gain - SLC27A3 ENSG00000143554 CDS Human protein_coding chr1:153750716 chr1:153750715 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_31158 0 0 0 0 1 SLC27A3 chr1:153750637 3'AG 153750637 Downstream 79bp 28593 chr7 150707251 150707251 1 + C T rs148919189 150707252 + 150707232 150707272 41 CCCCGGCTGCCCCCGTGCACGCTGCGCCAGGCTCTCACCTT CCCCGGCTGCCCCCGTGCATGCTGCGCCAGGCTCTCACCTT < 41bp 0.503366309818839 0.710497376827482 NA NA prediction 0.414262134017286 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150707252 chr7:150707251 nonsynonymous SNV 0.838 4 20 hm7G_associated_SNPs_31159 0 0 0 0 1 NOS3 chr7:150707203 3'AG 150707203 Downstream 49bp 28594 chr22 22661547 22661547 1 + G T ESCA 22661548 + 22661528 22661568 41 ATATTTTCTGTAGGGTGGAGGAGGTTTCAGACCATCCCGCT ATATTTTCTGTAGGGTGGATGAGGTTTCAGACCATCCCGCT < 41bp 0.406747812938536 0.707126110514305 NA NA prediction 0.41425222102861 Functional Gain - BMS1P20 ENSG00000236850;ENSG00000272779 ncRNA_exonic Human other chr22:22661548 chr22:22661547 . . 0 20 hm7G_associated_SNPs_31162 0 0 1 0 2 BMS1P20 chr22:22661471 3'AG 22661471 Downstream 77bp 28595 chr22 22661547 22661547 1 + G T ESCA 22661548 + 22661528 22661568 41 ATATTTTCTGTAGGGTGGAGGAGGTTTCAGACCATCCCGCT ATATTTTCTGTAGGGTGGATGAGGTTTCAGACCATCCCGCT < 41bp 0.406747812938536 0.707126110514305 NA NA prediction 0.41425222102861 Functional Gain - BMS1P20 ENSG00000236850;ENSG00000272779 ncRNA_exonic Human other chr22:22661548 chr22:22661547 . . 0 20 hm7G_associated_SNPs_31162 0 0 1 0 2 BMS1P20 chr22:22661610 5'GT 22661610 Upstream 64bp 28596 chr10 105169499 105169499 1 + C T UCEC 105169500 + 105169480 105169520 41 AACTTCCTCACATTCTTCACGGGCGTGGTTGACTTTATGCA AACTTCCTCACATTCTTCATGGGCGTGGTTGACTTTATGCA < 41bp 0.497036204669792 0.707124024799247 NA NA prediction 0.414248049598494 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105169500 chr10:105169499 nonsynonymous SNV 0.243 3 20 hm7G_associated_SNPs_31164 0 0 1 0 2 PDCD11 chr10:105169456 3'AG 105169456 Downstream 44bp 28597 chr10 105169499 105169499 1 + C T UCEC 105169500 + 105169480 105169520 41 AACTTCCTCACATTCTTCACGGGCGTGGTTGACTTTATGCA AACTTCCTCACATTCTTCATGGGCGTGGTTGACTTTATGCA < 41bp 0.497036204669792 0.707124024799247 NA NA prediction 0.414248049598494 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105169500 chr10:105169499 nonsynonymous SNV 0.243 3 20 hm7G_associated_SNPs_31164 0 0 1 0 2 PDCD11 chr10:105169563 5'GT 105169563 Upstream 65bp 28598 chr1 19062163 19062163 1 + C T STAD 19062164 + 19062144 19062184 41 AACCCCAGTGCGGTGCCCCCGCAGCCACAGGCTGACTTCTC AACCCCAGTGCGGTGCCCCTGCAGCCACAGGCTGACTTCTC < 41bp 0.494912481168409 0.707123412312704 NA NA prediction 0.414246824625409 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19062164 chr1:19062163 nonsynonymous SNV 0.723 1 20 hm7G_associated_SNPs_31165 0 0 0 0 1 PAX7 chr1:19062126 3'AG 19062126 Downstream 38bp 28599 chr11 71212387 71212387 1 + G A rs12282060 71212388 + 71212368 71212408 41 AGAGCCACAGTCCCTGGACGGCGTGGACTGAGGCCGGTTCC AGAGCCACAGTCCCTGGACAGCGTGGACTGAGGCCGGTTCC < 41bp 0.51333417189207 0.720457556855357 NA NA prediction 0.414246769926572 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71212388 chr11:71212387 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_31166 0 0 1 0 1 NADSYN1 chr11:71212348 3'AG 71212348 Downstream 40bp 28600 chr16 32265026 32265026 1 + G A SKCM 32265027 + 32265007 32265047 41 TCTCACTGCCTCCGCGGCAGGGTTGTCAAGGTAACGCTCCT TCTCACTGCCTCCGCGGCAAGGTTGTCAAGGTAACGCTCCT < 41bp 0.509798614655469 0.716920154415271 NA NA prediction 0.414243079519603 Functional Gain - TP53TG3D ENSG00000205456 CDS Human protein_coding chr16:32265027 chr16:32265026 nonsynonymous SNV 0.008 1 20 hm7G_associated_SNPs_31168 0 0 0 1 1 TP53TG3D chr16:32265036 5'GT 32265036 Upstream 11bp 28601 chr4 158254422 158254422 1 + G T UCEC 158254423 + 158254403 158254443 41 TCAGGTTGAAGGTCTCTCAGGAAATATAAAGTTTGACCAGA TCAGGTTGAAGGTCTCTCATGAAATATAAAGTTTGACCAGA < 41bp 0.391195442607391 0.707120127605456 NA NA prediction 0.414240255210912 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254423 chr4:158254422 stopgain 0.998 1 20 hm7G_associated_SNPs_31169 0 0 0 3 2 GRIA2 chr4:158254401 3'AG 158254401 Downstream 22bp 28602 chr4 158254422 158254422 1 + G T UCEC 158254423 + 158254403 158254443 41 TCAGGTTGAAGGTCTCTCAGGAAATATAAAGTTTGACCAGA TCAGGTTGAAGGTCTCTCATGAAATATAAAGTTTGACCAGA < 41bp 0.391195442607391 0.707120127605456 NA NA prediction 0.414240255210912 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158254423 chr4:158254422 stopgain 0.998 1 20 hm7G_associated_SNPs_31169 0 0 0 3 2 GRIA2 chr4:158254505 5'GT 158254505 Upstream 84bp 28603 chr12 2926419 2926419 1 + G A STAD 2926420 + 2926400 2926440 41 GGTGGTGGGAGACACCAGCGGGAAGGTGTCTGTGTATAAAA GGTGGTGGGAGACACCAGCAGGAAGGTGTCTGTGTATAAAA < 41bp 0.493166530320174 0.707116292651439 NA NA prediction 0.414232585302878 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2926420 chr12:2926419 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_31173 0 0 1 1 2 ITFG2 chr12:2926389 3'AG 2926389 Downstream 31bp 28604 chr12 2926419 2926419 1 + G A STAD 2926420 + 2926400 2926440 41 GGTGGTGGGAGACACCAGCGGGAAGGTGTCTGTGTATAAAA GGTGGTGGGAGACACCAGCAGGAAGGTGTCTGTGTATAAAA < 41bp 0.493166530320174 0.707116292651439 NA NA prediction 0.414232585302878 Functional Gain - ITFG2 ENSG00000111203 CDS Human protein_coding chr12:2926420 chr12:2926419 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_31173 0 0 1 1 2 ITFG2 chr12:2926484 5'GT 2926484 Upstream 66bp 28605 chr4 6588894 6588894 1 + G A LGG 6588895 + 6588875 6588915 41 GCAGCCATGCAGGAGGCCCGGGTGAGTGGTGTGCCGCGTCT GCAGCCATGCAGGAGGCCCAGGTGAGTGGTGTGCCGCGTCT < 41bp 0.489136766575061 0.707116124466655 NA NA prediction 0.414232248933309 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6588895 chr4:6588894 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_31174 0 0 1 0 1 MAN2B2 chr4:6588895 5'GT 6588895 Upstream 2bp 28606 chr19 38621226 38621226 1 + C T STAD 38621227 + 38621207 38621247 41 CACGTGAAGTACGACGGCACGGTGGCCGAGGTTGAGGACTA CACGTGAAGTACGACGGCATGGTGGCCGAGGTTGAGGACTA < 41bp 0.502868202471188 0.709982793463671 NA NA prediction 0.414229181984967 Functional Gain - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38621227 chr19:38621226 nonsynonymous SNV 0.814 4 20 hm7G_associated_SNPs_31175 0 0 1 0 1 SIPA1L3 chr19:38621138 3'AG 38621138 Downstream 89bp 28607 chr20 58569504 58569504 1 + G A UCEC 58569505 + 58569485 58569525 41 TTGAATTGGACAATACCTGGGGAAATGCGGAGGACACATGG TTGAATTGGACAATACCTGAGGAAATGCGGAGGACACATGG < 41bp 0.499125310849641 0.707111585221449 NA NA prediction 0.414223170442897 Functional Gain - CDH26 ENSG00000124215 CDS Human protein_coding chr20:58569505 chr20:58569504 stopgain 0.003 0 20 hm7G_associated_SNPs_31178 0 0 0 0 1 CDH26 chr20:58569544 5'GT 58569544 Upstream 41bp 28608 chr5 5303758 5303758 1 + C T UCEC 5303759 + 5303739 5303779 41 ACCAACCCCTCGGCCAGAGCGCAGCTGCTGCCCGACGCTGT ACCAACCCCTCGGCCAGAGTGCAGCTGCTGCCCGACGCTGT < 41bp 0.505186112311355 0.712296427212996 NA NA prediction 0.414220629803282 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303759 chr5:5303758 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_31179 0 0 0 0 1 ADAMTS16 chr5:5303685 3'AG 5303685 Downstream 74bp 28609 chr6 167711546 167711546 1 + G A SKCM 167711547 + 167711527 167711567 41 GCTGGTCTACACCCTCCTGGGCATCTACACTGGTACGAGCT GCTGGTCTACACCCTCCTGAGCATCTACACTGGTACGAGCT < 41bp 0.554371128550796 0.761480735279651 NA NA prediction 0.414219213457712 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167711547 chr6:167711546 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_31181 0 0 1 0 1 UNC93A chr6:167711558 5'GT 167711558 Upstream 13bp 28610 chr15 59406974 59406974 1 + C T COAD 59406975 + 59406955 59406995 41 AGATATAAATGGACGCATGCGTGCCATCCTAGTGGATTGGC AGATATAAATGGACGCATGTGTGCCATCCTAGTGGATTGGC < 41bp 0.513530296443945 0.720638951452495 NA NA prediction 0.4142173100171 Functional Gain - CCNB2 ENSG00000157456 CDS Human protein_coding chr15:59406975 chr15:59406974 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31182 0 0 1 0 1 CCNB2 chr15:59406917 3'AG 59406917 Downstream 58bp 28611 chr2 27167616 27167616 1 + C T UCEC 27167617 + 27167597 27167637 41 AAGAGATGGGAACCCCACTCGCAGACACTCCTACCCGGCCC AAGAGATGGGAACCCCACTTGCAGACACTCCTACCCGGCCC < 41bp 0.533462931029162 0.74056976172595 NA NA prediction 0.414213661393575 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27167617 chr2:27167616 synonymous SNV . 0 20 hm7G_associated_SNPs_31184 0 0 0 0 2 DPYSL5 chr2:27167524 3'AG 27167524 Downstream 93bp 28612 chr2 27167616 27167616 1 + C T UCEC 27167617 + 27167597 27167637 41 AAGAGATGGGAACCCCACTCGCAGACACTCCTACCCGGCCC AAGAGATGGGAACCCCACTTGCAGACACTCCTACCCGGCCC < 41bp 0.533462931029162 0.74056976172595 NA NA prediction 0.414213661393575 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27167617 chr2:27167616 synonymous SNV . 0 20 hm7G_associated_SNPs_31184 0 0 0 0 2 DPYSL5 chr2:27167692 5'GT 27167692 Upstream 77bp 28613 chr12 54964116 54964116 1 + G A OV 54964117 + 54964097 54964137 41 GTTTTTGAGTTGCTGACTCGGCATAACCTCATCAGCCGCTT GTTTTTGAGTTGCTGACTCAGCATAACCTCATCAGCCGCTT < 41bp 0.520749847638724 0.727856190691691 NA NA prediction 0.414212686105934 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54964117 chr12:54964116 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_31185 0 0 0 0 2 PDE1B chr12:54964025 3'AG 54964025 Downstream 92bp 28614 chr12 54964116 54964116 1 + G A OV 54964117 + 54964097 54964137 41 GTTTTTGAGTTGCTGACTCGGCATAACCTCATCAGCCGCTT GTTTTTGAGTTGCTGACTCAGCATAACCTCATCAGCCGCTT < 41bp 0.520749847638724 0.727856190691691 NA NA prediction 0.414212686105934 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54964117 chr12:54964116 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_31185 0 0 0 0 2 PDE1B chr12:54964141 5'GT 54964141 Upstream 26bp 28615 chr21 45708278 45708278 1 + G A rs148012328 45708279 + 45708259 45708299 41 AGCTGTGGCCATGTCCTCCGGGGACGTCCCGGGAGCCCGAG AGCTGTGGCCATGTCCTCCAGGGACGTCCCGGGAGCCCGAG < 41bp 0.592944586232064 0.800049303955415 NA NA prediction 0.414209435446702 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45708279 chr21:45708278 nonsynonymous SNV 0.353 2 20 hm7G_associated_SNPs_31188 0 0 0 0 2 AIRE chr21:45708228 3'AG 45708228 Downstream 51bp 28616 chr21 45708278 45708278 1 + G A rs148012328 45708279 + 45708259 45708299 41 AGCTGTGGCCATGTCCTCCGGGGACGTCCCGGGAGCCCGAG AGCTGTGGCCATGTCCTCCAGGGACGTCCCGGGAGCCCGAG < 41bp 0.592944586232064 0.800049303955415 NA NA prediction 0.414209435446702 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45708279 chr21:45708278 nonsynonymous SNV 0.353 2 20 hm7G_associated_SNPs_31188 0 0 0 0 2 AIRE chr21:45708341 5'GT 45708341 Upstream 64bp 28617 chr10 129875961 129875961 1 + C T UCEC 129875962 + 129875942 129875982 41 CTGAGATCGGGATTCCCGCCGAGGGCAAAGGCATGATTGAC CTGAGATCGGGATTCCCGCTGAGGGCAAAGGCATGATTGAC < 41bp 0.491708020471984 0.707103815850148 NA NA prediction 0.414207631700295 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129875962 chr10:129875961 synonymous SNV . 0 20 hm7G_associated_SNPs_31189 0 0 0 0 2 PTPRE chr10:129875881 3'AG 129875881 Downstream 81bp 28618 chr10 129875961 129875961 1 + C T UCEC 129875962 + 129875942 129875982 41 CTGAGATCGGGATTCCCGCCGAGGGCAAAGGCATGATTGAC CTGAGATCGGGATTCCCGCTGAGGGCAAAGGCATGATTGAC < 41bp 0.491708020471984 0.707103815850148 NA NA prediction 0.414207631700295 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129875962 chr10:129875961 synonymous SNV . 0 20 hm7G_associated_SNPs_31189 0 0 0 0 2 PTPRE chr10:129876047 5'GT 129876047 Upstream 87bp 28619 chr1 8385423 8385423 1 + C T rs200531790 8385424 + 8385404 8385444 41 CTCAAGGTTTGGAAGGAGACGCCCTTTCATTCTTGTCCTGG CTCAAGGTTTGGAAGGAGATGCCCTTTCATTCTTGTCCTGG < 41bp 0.517485748445224 0.724588677846915 NA NA prediction 0.414205858803381 Functional Gain - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8385424 chr1:8385423 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31190 0 0 0 0 2 SLC45A1 chr1:8385358 3'AG 8385358 Downstream 66bp 28620 chr1 8385423 8385423 1 + C T rs200531790 8385424 + 8385404 8385444 41 CTCAAGGTTTGGAAGGAGACGCCCTTTCATTCTTGTCCTGG CTCAAGGTTTGGAAGGAGATGCCCTTTCATTCTTGTCCTGG < 41bp 0.517485748445224 0.724588677846915 NA NA prediction 0.414205858803381 Functional Gain - SLC45A1 ENSG00000162426 CDS Human protein_coding chr1:8385424 chr1:8385423 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31190 0 0 0 0 2 SLC45A1 chr1:8385450 5'GT 8385450 Upstream 28bp 28621 chr4 156716530 156716530 1 + C T COAD 156716531 + 156716511 156716551 41 AGCCTTCTGTCTGTCTTCTCGCTGGTTCGTCCTCATATTGA AGCCTTCTGTCTGTCTTCTTGCTGGTTCGTCCTCATATTGA < 41bp 0.511327016808005 0.718429262287708 NA NA prediction 0.414204490959406 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156716531 chr4:156716530 nonsynonymous SNV 0.838 3 20 hm7G_associated_SNPs_31191 0 0 0 0 2 GUCY1B3 chr4:156716493 3'AG 156716493 Downstream 38bp 28622 chr4 156716530 156716530 1 + C T COAD 156716531 + 156716511 156716551 41 AGCCTTCTGTCTGTCTTCTCGCTGGTTCGTCCTCATATTGA AGCCTTCTGTCTGTCTTCTTGCTGGTTCGTCCTCATATTGA < 41bp 0.511327016808005 0.718429262287708 NA NA prediction 0.414204490959406 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156716531 chr4:156716530 nonsynonymous SNV 0.838 3 20 hm7G_associated_SNPs_31191 0 0 0 0 2 GUCY1B3 chr4:156716609 5'GT 156716609 Upstream 80bp 28623 chr11 118849880 118849880 1 + G A ESCA 118849881 + 118849861 118849901 41 AGCAAGCGGTCTCCCCCTCGGAAGCGGTTTGCCTTTTCCCC AGCAAGCGGTCTCCCCCTCAGAAGCGGTTTGCCTTTTCCCC < 41bp 0.492965156376252 0.70710006997705 NA NA prediction 0.414200139954101 Functional Gain - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118849881 chr11:118849880 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_31192 0 0 0 0 1 FOXR1 chr11:118849914 5'GT 118849914 Upstream 35bp 28624 chr20 11900400 11900400 1 + C T BRCA 11900401 + 11900381 11900421 41 GGGAGCTCTGTGTTCCATGCGATGTTTTACGGAGAACTTGC GGGAGCTCTGTGTTCCATGTGATGTTTTACGGAGAACTTGC < 41bp 0.529900657530205 0.737000265763239 NA NA prediction 0.414199216466068 Functional Gain - BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900401 chr20:11900400 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31193 0 0 1 0 2 BTBD3 chr20:11900366 3'AG 11900366 Downstream 35bp 28625 chr20 11900400 11900400 1 + C T BRCA 11900401 + 11900381 11900421 41 GGGAGCTCTGTGTTCCATGCGATGTTTTACGGAGAACTTGC GGGAGCTCTGTGTTCCATGTGATGTTTTACGGAGAACTTGC < 41bp 0.529900657530205 0.737000265763239 NA NA prediction 0.414199216466068 Functional Gain - BTBD3 ENSG00000132640 CDS Human protein_coding chr20:11900401 chr20:11900400 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31193 0 0 1 0 2 BTBD3 chr20:11900484 5'GT 11900484 Upstream 85bp 28626 chr12 176528 176528 1 + C T STAD 176529 + 176509 176549 41 AGCGTCCCCCGAGTTGCTGCGCTGCTGCCGGAGCCCTCCTT AGCGTCCCCCGAGTTGCTGTGCTGCTGCCGGAGCCCTCCTT < 41bp 0.504443280179933 0.711542406818596 NA NA prediction 0.414198253277327 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:176529 chr12:176528 synonymous SNV . 0 20 hm7G_associated_SNPs_31194 0 0 0 0 1 IQSEC3 chr12:176602 5'GT 176602 Upstream 75bp 28627 chr15 45440547 45440547 1 + C T UCEC 45440548 + 45440528 45440568 41 GAGTCCATGTTCCGGGAGTCGGGATTCCAGGACAAGGAGGA GAGTCCATGTTCCGGGAGTTGGGATTCCAGGACAAGGAGGA < 41bp 0.490103426814779 0.707095391596276 NA NA prediction 0.414190783192552 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45440548 chr15:45440547 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_31198 0 0 0 0 2 DUOX1 chr15:45440470 3'AG 45440470 Downstream 78bp 28628 chr15 45440547 45440547 1 + C T UCEC 45440548 + 45440528 45440568 41 GAGTCCATGTTCCGGGAGTCGGGATTCCAGGACAAGGAGGA GAGTCCATGTTCCGGGAGTTGGGATTCCAGGACAAGGAGGA < 41bp 0.490103426814779 0.707095391596276 NA NA prediction 0.414190783192552 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45440548 chr15:45440547 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_31198 0 0 0 0 2 DUOX1 chr15:45440645 5'GT 45440645 Upstream 99bp 28629 chr17 36636080 36636080 1 + C T COAD 36636081 + 36636061 36636101 41 GAGTTCCTCAAGCAGAGTGCGGCACGTGGCCTCAGGACTCA GAGTTCCTCAAGCAGAGTGTGGCACGTGGCCTCAGGACTCA < 41bp 0.528128685535355 0.735223927409516 NA NA prediction 0.414190483748322 Functional Gain - ARHGAP23 ENSG00000225485 CDS Human other chr17:36636081 chr17:36636080 nonsynonymous SNV 0.033 0 20 hm7G_associated_SNPs_31199 0 0 0 0 1 ARHGAP23 chr17:36635994 3'AG 36635994 Downstream 87bp 28630 chr19 5757901 5757901 1 + C T UCEC 5757902 + 5757882 5757922 41 GGTTCCAGGCCACCTTCTACGAGAACGGTTACACATCAGAT GGTTCCAGGCCACCTTCTATGAGAACGGTTACACATCAGAT < 41bp 0.522630914002098 0.729724606373647 NA NA prediction 0.414187384743098 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5757902 chr19:5757901 synonymous SNV . 0 20 hm7G_associated_SNPs_31200 0 0 0 0 2 CATSPERD chr19:5757854 3'AG 5757854 Downstream 48bp 28631 chr19 5757901 5757901 1 + C T UCEC 5757902 + 5757882 5757922 41 GGTTCCAGGCCACCTTCTACGAGAACGGTTACACATCAGAT GGTTCCAGGCCACCTTCTATGAGAACGGTTACACATCAGAT < 41bp 0.522630914002098 0.729724606373647 NA NA prediction 0.414187384743098 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5757902 chr19:5757901 synonymous SNV . 0 20 hm7G_associated_SNPs_31200 0 0 0 0 2 CATSPERD chr19:5757943 5'GT 5757943 Upstream 43bp 28632 chr13 33591317 33591317 1 + G A STAD 33591318 + 33591298 33591338 41 CTACGTGGTGGCCTGGCACGGCTACGCCACCGGGCGCCTGG CTACGTGGTGGCCTGGCACAGCTACGCCACCGGGCGCCTGG < 41bp 0.538015344518061 0.745108528148886 NA NA prediction 0.41418636726165 Functional Gain - KL ENSG00000133116 CDS Human protein_coding chr13:33591318 chr13:33591317 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31201 0 0 0 0 1 KL chr13:33591397 5'GT 33591397 Upstream 81bp 28633 chr12 121176360 121176360 1 + G A UCEC 121176361 + 121176341 121176381 41 CCTGGACATGGGCCGCATCGGCATCGCCTCCCAGGCCCTGG CCTGGACATGGGCCGCATCAGCATCGCCTCCCAGGCCCTGG < 41bp 0.574386508598779 0.781476834000217 NA NA prediction 0.414180650802874 Functional Gain - ACADS ENSG00000122971 CDS Human protein_coding chr12:121176361 chr12:121176360 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_31203 1 0 0 0 1 ACADS chr12:121176336 3'AG 121176336 Downstream 25bp 28634 chr17 27014390 27014390 1 + C T SKCM 27014391 + 27014371 27014411 41 TCAACCGAGTCAATGAGGTCGGGGTCGATGTCAACCGTGCC TCAACCGAGTCAATGAGGTTGGGGTCGATGTCAACCGTGCC < 41bp 0.529800322632795 0.73688795382432 NA NA prediction 0.41417526238305 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014391 chr17:27014390 synonymous SNV . 0 20 hm7G_associated_SNPs_31206 0 0 1 0 2 SUPT6H chr17:27014322 3'AG 27014322 Downstream 69bp 28635 chr17 27014390 27014390 1 + C T SKCM 27014391 + 27014371 27014411 41 TCAACCGAGTCAATGAGGTCGGGGTCGATGTCAACCGTGCC TCAACCGAGTCAATGAGGTTGGGGTCGATGTCAACCGTGCC < 41bp 0.529800322632795 0.73688795382432 NA NA prediction 0.41417526238305 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27014391 chr17:27014390 synonymous SNV . 0 20 hm7G_associated_SNPs_31206 0 0 1 0 2 SUPT6H chr17:27014489 5'GT 27014489 Upstream 100bp 28636 chr4 5798841 5798841 1 + C T STAD 5798842 + 5798822 5798862 41 AACGCCCTGGCCACCCTGACGCAGATGCGGCTATCGGGGAA AACGCCCTGGCCACCCTGATGCAGATGCGGCTATCGGGGAA < 41bp 0.519914649041272 0.727002214191069 NA NA prediction 0.414175130299595 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5798842 chr4:5798841 nonsynonymous SNV 0.027 2 20 hm7G_associated_SNPs_31207 0 0 0 0 1 EVC chr4:5798749 3'AG 5798749 Downstream 93bp 28637 chr7 101091016 101091016 1 + G A UCEC 101091017 + 101090997 101091037 41 TGTCCTACCGCACGGTGACGGTGCTGGAGTGGAGATGCTGC TGTCCTACCGCACGGTGACAGTGCTGGAGTGGAGATGCTGC < 41bp 0.512883188804684 0.719969655545218 NA NA prediction 0.414172933481068 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101091017 chr7:101091016 synonymous SNV . 0 20 hm7G_associated_SNPs_31208 0 0 1 0 2 COL26A1 chr7:101090965 3'AG 101090965 Downstream 52bp 28638 chr7 101091016 101091016 1 + G A UCEC 101091017 + 101090997 101091037 41 TGTCCTACCGCACGGTGACGGTGCTGGAGTGGAGATGCTGC TGTCCTACCGCACGGTGACAGTGCTGGAGTGGAGATGCTGC < 41bp 0.512883188804684 0.719969655545218 NA NA prediction 0.414172933481068 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101091017 chr7:101091016 synonymous SNV . 0 20 hm7G_associated_SNPs_31208 0 0 1 0 2 COL26A1 chr7:101090971 3'AG 101090971 Downstream 46bp 28639 chr19 6926380 6926380 1 + G A SKCM 6926381 + 6926361 6926401 41 TGCTTCTCCCCTCCAGATGGGCTGCGCCATCATCGCGGGCT TGCTTCTCCCCTCCAGATGAGCTGCGCCATCATCGCGGGCT < 41bp 0.534732544698954 0.741816855719043 NA NA prediction 0.414168622040178 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6926381 chr19:6926380 nonsynonymous SNV 0.213 0 20 hm7G_associated_SNPs_31209 0 0 0 0 1 ADGRE1 chr19:6926377 3'AG 6926377 Downstream 4bp 28640 chr2 241513289 241513289 1 + G A LIHC 241513290 + 241513270 241513310 41 TGCAGCTGAGCGGCTGTATGGGCCCTACATGTGGGGCAGGT TGCAGCTGAGCGGCTGTATAGGCCCTACATGTGGGGCAGGT < 41bp 0.576372852957071 0.783456996222935 NA NA prediction 0.414168286531728 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241513290 chr2:241513289 nonsynonymous SNV 0.423 4 20 hm7G_associated_SNPs_31211 0 0 0 0 2 RNPEPL1 chr2:241513192 3'AG 241513192 Downstream 98bp 28641 chr2 241513289 241513289 1 + G A LIHC 241513290 + 241513270 241513310 41 TGCAGCTGAGCGGCTGTATGGGCCCTACATGTGGGGCAGGT TGCAGCTGAGCGGCTGTATAGGCCCTACATGTGGGGCAGGT < 41bp 0.576372852957071 0.783456996222935 NA NA prediction 0.414168286531728 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241513290 chr2:241513289 nonsynonymous SNV 0.423 4 20 hm7G_associated_SNPs_31211 0 0 0 0 2 RNPEPL1 chr2:241513308 5'GT 241513308 Upstream 20bp 28642 chr11 8060559 8060559 1 + G A SKCM 8060560 + 8060540 8060580 41 ACCTGGGCCCCTGAAACGGGGCCACCGAAGAGATCGGTAAG ACCTGGGCCCCTGAAACGGAGCCACCGAAGAGATCGGTAAG < 41bp 0.52314757172841 0.73022975236839 NA NA prediction 0.41416436127996 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8060560 chr11:8060559 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31213 0 0 0 0 1 TUB chr11:8060575 5'GT 8060575 Upstream 17bp 28643 chr12 50475349 50475349 1 + G A UCEC 50475350 + 50475330 50475370 41 CCCGTGCGAGAGCCTTCGGGGCCACCCTGCCGGGATGACAT CCCGTGCGAGAGCCTTCGGAGCCACCCTGCCGGGATGACAT < 41bp 0.527326052058158 0.734407528670836 NA NA prediction 0.414162953225356 Functional Gain - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50475350 chr12:50475349 nonsynonymous SNV 0.706 0 20 hm7G_associated_SNPs_31215 0 0 1 0 1 ASIC1 chr12:50475328 3'AG 50475328 Downstream 22bp 28644 chr11 18723217 18723217 1 + G A UCEC 18723218 + 18723198 18723238 41 TGGTGATGGCAGCGCTGTCGGGCCTGTGCTATGCCCTCCTC TGGTGATGGCAGCGCTGTCAGGCCTGTGCTATGCCCTCCTC < 41bp 0.560252392573279 0.767333218225569 NA NA prediction 0.41416165130458 Functional Gain - TMEM86A ENSG00000151117 CDS Human protein_coding chr11:18723218 chr11:18723217 synonymous SNV . 0 20 hm7G_associated_SNPs_31217 0 0 0 0 1 TMEM86A chr11:18723120 3'AG 18723120 Downstream 98bp 28645 chr16 30937143 30937143 1 + G A CESC 30937144 + 30937124 30937164 41 ACCCGCTGCCGCCGCTGCCGGGCCTGTGTGCGAACTGAGTG ACCCGCTGCCGCCGCTGCCAGGCCTGTGTGCGAACTGAGTG < 41bp 0.577359890006439 0.784439632642993 NA NA prediction 0.414159485273108 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30937144 chr16:30937143 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_31219 0 0 1 0 2 FBXL19 chr16:30937052 3'AG 30937052 Downstream 92bp 28646 chr16 30937143 30937143 1 + G A CESC 30937144 + 30937124 30937164 41 ACCCGCTGCCGCCGCTGCCGGGCCTGTGTGCGAACTGAGTG ACCCGCTGCCGCCGCTGCCAGGCCTGTGTGCGAACTGAGTG < 41bp 0.577359890006439 0.784439632642993 NA NA prediction 0.414159485273108 Functional Gain - FBXL19 ENSG00000099364 CDS Human protein_coding chr16:30937144 chr16:30937143 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_31219 0 0 1 0 2 FBXL19 chr16:30937090 3'AG 30937090 Downstream 54bp 28647 chr6 160501242 160501242 1 + C T LGG 160501243 + 160501223 160501263 41 TGCATCATAGAGAGCAGGGCGAAGCTGTGGTGTAGCACAAC TGCATCATAGAGAGCAGGGTGAAGCTGTGGTGTAGCACAAC < 41bp 0.502964823564509 0.710042577236584 NA NA prediction 0.414155507344151 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160501243 chr6:160501242 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_31220 0 0 1 0 2 IGF2R chr6:160501161 3'AG 160501161 Downstream 82bp 28648 chr6 160501242 160501242 1 + C T LGG 160501243 + 160501223 160501263 41 TGCATCATAGAGAGCAGGGCGAAGCTGTGGTGTAGCACAAC TGCATCATAGAGAGCAGGGTGAAGCTGTGGTGTAGCACAAC < 41bp 0.502964823564509 0.710042577236584 NA NA prediction 0.414155507344151 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160501243 chr6:160501242 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_31220 0 0 1 0 2 IGF2R chr6:160501307 5'GT 160501307 Upstream 66bp 28649 chr10 72326400 72326400 1 + G A rs10999406 72326401 + 72326381 72326421 41 CTTCCCCGAGCTGGAGAGCGGGGAGGACCAGCCCTTCTCCA CTTCCCCGAGCTGGAGAGCAGGGAGGACCAGCCCTTCTCCA < 41bp 0.506316294044197 0.71339388623471 NA NA prediction 0.414155184381025 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72326401 chr10:72326400 nonsynonymous SNV 0.158 0 20 hm7G_associated_SNPs_31221 0 0 0 0 1 PALD1 chr10:72326337 3'AG 72326337 Downstream 64bp 28650 chr7 150839330 150839330 1 + C T UCEC 150839331 + 150839311 150839351 41 ACAGCTTTTGTATCGACTGCGATGCACCCAGTGAGTGCAAG ACAGCTTTTGTATCGACTGTGATGCACCCAGTGAGTGCAAG < 41bp 0.522507687652161 0.729585078698238 NA NA prediction 0.414154782092155 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150839331 chr7:150839330 synonymous SNV . 0 20 hm7G_associated_SNPs_31222 0 0 1 0 2 AGAP3 chr7:150839250 3'AG 150839250 Downstream 81bp 28651 chr7 150839330 150839330 1 + C T UCEC 150839331 + 150839311 150839351 41 ACAGCTTTTGTATCGACTGCGATGCACCCAGTGAGTGCAAG ACAGCTTTTGTATCGACTGTGATGCACCCAGTGAGTGCAAG < 41bp 0.522507687652161 0.729585078698238 NA NA prediction 0.414154782092155 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150839331 chr7:150839330 synonymous SNV . 0 20 hm7G_associated_SNPs_31222 0 0 1 0 2 AGAP3 chr7:150839340 5'GT 150839340 Upstream 11bp 28652 chr10 50856571 50856571 1 + G T LUSC 50856572 + 50856552 50856592 41 GTTTGTGGTGGGCCGAGACGGCACCTGCGGTGTGGTGTGCG GTTTGTGGTGGGCCGAGACTGCACCTGCGGTGTGGTGTGCG < 41bp 0.707178321705839 0.914251569074929 NA NA prediction 0.414146494738182 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50856572 chr10:50856571 nonsynonymous SNV 0.802 5 20 hm7G_associated_SNPs_31225 0 0 0 0 2 CHAT chr10:50856553 3'AG 50856553 Downstream 19bp 28653 chr10 50856571 50856571 1 + G T LUSC 50856572 + 50856552 50856592 41 GTTTGTGGTGGGCCGAGACGGCACCTGCGGTGTGGTGTGCG GTTTGTGGTGGGCCGAGACTGCACCTGCGGTGTGGTGTGCG < 41bp 0.707178321705839 0.914251569074929 NA NA prediction 0.414146494738182 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50856572 chr10:50856571 nonsynonymous SNV 0.802 5 20 hm7G_associated_SNPs_31225 0 0 0 0 2 CHAT chr10:50856653 5'GT 50856653 Upstream 83bp 28654 chr6 43410728 43410728 1 + C T CESC 43410729 + 43410709 43410749 41 AAAAGGAGCTCTATCTCCTCGATGACCCTCTGGCCGCTGTG AAAAGGAGCTCTATCTCCTTGATGACCCTCTGGCCGCTGTG < 41bp 0.529630459001273 0.736703081802007 NA NA prediction 0.414145245601469 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43410729 chr6:43410728 synonymous SNV . 0 20 hm7G_associated_SNPs_31226 0 0 1 0 1 ABCC10 chr6:43410708 3'AG 43410708 Downstream 21bp 28655 chr11 61495724 61495724 1 + C T UCEC 61495725 + 61495705 61495745 41 CCTGGTGCTGCTCCGGCAGCGGCAGCGGGCCAAGCGCAACG CCTGGTGCTGCTCCGGCAGTGGCAGCGGGCCAAGCGCAACG < 41bp 0.52400641441773 0.731078986929033 NA NA prediction 0.414145145022607 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61495725 chr11:61495724 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31227 0 0 0 0 2 DAGLA chr11:61495625 3'AG 61495625 Downstream 100bp 28656 chr11 61495724 61495724 1 + C T UCEC 61495725 + 61495705 61495745 41 CCTGGTGCTGCTCCGGCAGCGGCAGCGGGCCAAGCGCAACG CCTGGTGCTGCTCCGGCAGTGGCAGCGGGCCAAGCGCAACG < 41bp 0.52400641441773 0.731078986929033 NA NA prediction 0.414145145022607 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61495725 chr11:61495724 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31227 0 0 0 0 2 DAGLA chr11:61495759 5'GT 61495759 Upstream 36bp 28657 chr2 79348738 79348738 1 + G A LUSC 79348739 + 79348719 79348759 41 CCGGATCAGCTGCCCAGAAGGCACCAATGCCTATCGCTCCT CCGGATCAGCTGCCCAGAAAGCACCAATGCCTATCGCTCCT < 41bp 0.553642342853976 0.760709763876139 NA NA prediction 0.414134842044328 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348739 chr2:79348738 nonsynonymous SNV 0.496 3 20 hm7G_associated_SNPs_31229 0 0 0 0 2 REG1A chr2:79348688 3'AG 79348688 Downstream 51bp 28658 chr2 79348738 79348738 1 + G A LUSC 79348739 + 79348719 79348759 41 CCGGATCAGCTGCCCAGAAGGCACCAATGCCTATCGCTCCT CCGGATCAGCTGCCCAGAAAGCACCAATGCCTATCGCTCCT < 41bp 0.553642342853976 0.760709763876139 NA NA prediction 0.414134842044328 Functional Gain - REG1A ENSG00000115386 CDS Human protein_coding chr2:79348739 chr2:79348738 nonsynonymous SNV 0.496 3 20 hm7G_associated_SNPs_31229 0 0 0 0 2 REG1A chr2:79348806 5'GT 79348806 Upstream 69bp 28659 chr20 42164829 42164829 1 + G A rs35845394 42164830 + 42164810 42164850 41 GGCTGCCCACTGGCTGAGAGGAACCAGAGCCGGCTGAAAGC GGCTGCCCACTGGCTGAGAAGAACCAGAGCCGGCTGAAAGC < 41bp 0.502896537631868 0.709960588914817 NA NA prediction 0.414128102565899 Functional Gain - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42164830 chr20:42164829 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_31231 0 0 0 0 1 L3MBTL1 chr20:42164737 3'AG 42164737 Downstream 93bp 28660 chr16 67686989 67686989 1 + G A rs184693842 67686990 + 67686970 67687010 41 AAGATGCAGAGCCGCAGGCGGGGCCGTCCGCGCGCGGCTCT AAGATGCAGAGCCGCAGGCAGGGCCGTCCGCGCGCGGCTCT < 41bp 0.559774535823767 0.766836683975857 NA NA prediction 0.41412429630418 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67686990 chr16:67686989 synonymous SNV . 0 20 hm7G_associated_SNPs_31234 0 0 0 0 1 CARMIL2 chr16:67686922 3'AG 67686922 Downstream 68bp 28661 chr12 6964677 6964677 1 + G A rs201018774 6964678 + 6964658 6964698 41 GTCTACTTGCACCTCCGGCGGACCCGGCGCCCGGTAGGAGC GTCTACTTGCACCTCCGGCAGACCCGGCGCCCGGTAGGAGC < 41bp 0.519174030234914 0.726232046355596 NA NA prediction 0.414116032241365 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6964678 chr12:6964677 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_31235 0 0 1 0 1 USP5 chr12:6964690 5'GT 6964690 Upstream 14bp 28662 chr2 219612366 219612366 1 + C T UCS 219612367 + 219612347 219612387 41 CGGCAGCAAGTTTGACCTGCGGATCTATGTTTATGTCACTT CGGCAGCAAGTTTGACCTGTGGATCTATGTTTATGTCACTT < 41bp 0.536171610692605 0.743228803540377 NA NA prediction 0.414114385695544 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219612367 chr2:219612366 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31236 0 0 0 0 3 TTLL4 chr2:219612320 3'AG 219612320 Downstream 47bp 28663 chr2 219612366 219612366 1 + C T UCS 219612367 + 219612347 219612387 41 CGGCAGCAAGTTTGACCTGCGGATCTATGTTTATGTCACTT CGGCAGCAAGTTTGACCTGTGGATCTATGTTTATGTCACTT < 41bp 0.536171610692605 0.743228803540377 NA NA prediction 0.414114385695544 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219612367 chr2:219612366 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31236 0 0 0 0 3 TTLL4 chr2:219612448 5'GT 219612448 Upstream 83bp 28664 chr2 219612366 219612366 1 + C T UCS 219612367 + 219612347 219612387 41 CGGCAGCAAGTTTGACCTGCGGATCTATGTTTATGTCACTT CGGCAGCAAGTTTGACCTGTGGATCTATGTTTATGTCACTT < 41bp 0.536171610692605 0.743228803540377 NA NA prediction 0.414114385695544 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219612367 chr2:219612366 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31236 0 0 0 0 3 TTLL4 chr2:219612461 5'GT 219612461 Upstream 96bp 28665 chr8 1645418 1645418 1 + C T UCEC 1645419 + 1645399 1645439 41 GAAGTTCGACGAGCTGCAGCGGCTGCGGCTCAACGACTGGA GAAGTTCGACGAGCTGCAGTGGCTGCGGCTCAACGACTGGA < 41bp 0.524046584855016 0.73110265572801 NA NA prediction 0.414112141745988 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1645419 chr8:1645418 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_31237 0 0 0 0 1 DLGAP2 chr8:1645465 5'GT 1645465 Upstream 48bp 28666 chr19 42791719 42791719 1 + G A LGG 42791720 + 42791700 42791740 41 GAGAAGGACCACATCCGGCGGCCCATGAATGCCTTCATGAT GAGAAGGACCACATCCGGCAGCCCATGAATGCCTTCATGAT < 41bp 0.483090499783903 0.707054536338478 NA NA prediction 0.414109072676957 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42791720 chr19:42791719 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31238 0 0 1 0 1 CIC chr19:42791697 3'AG 42791697 Downstream 23bp 28667 chr6 39835341 39835341 1 + C T LAML 39835342 + 39835322 39835362 41 CTGTCTGCTAAATTTCCTCCGGAGCATGGACCACGCCACCT CTGTCTGCTAAATTTCCTCTGGAGCATGGACCACGCCACCT < 41bp 0.549764834334471 0.756818681711177 NA NA prediction 0.414107694753413 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39835342 chr6:39835341 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31239 0 0 0 0 1 DAAM2 chr6:39835286 3'AG 39835286 Downstream 56bp 28668 chr1 15901280 15901280 1 - G A COAD 15901279 - 15901259 15901299 41 TGATGGGCTGTGATCTTGTCGAAGTTTCACCACCGTATGAT TGATGGGCTGTGATCTTGTTGAAGTTTCACCACCGTATGAT < 41bp 0.532103257931019 0.739154647427299 NA NA prediction 0.414102778992561 Functional Gain - AGMAT ENSG00000116771 CDS Human protein_coding chr1:15901279 chr1:15901280 synonymous SNV . 0 20 hm7G_associated_SNPs_31240 0 0 1 0 2 AGMAT chr1:15901252 5'GT 15901252 Upstream 29bp 28669 chr1 15901280 15901280 1 - G A COAD 15901279 - 15901259 15901299 41 TGATGGGCTGTGATCTTGTCGAAGTTTCACCACCGTATGAT TGATGGGCTGTGATCTTGTTGAAGTTTCACCACCGTATGAT < 41bp 0.532103257931019 0.739154647427299 NA NA prediction 0.414102778992561 Functional Gain - AGMAT ENSG00000116771 CDS Human protein_coding chr1:15901279 chr1:15901280 synonymous SNV . 0 20 hm7G_associated_SNPs_31240 0 0 1 0 2 AGMAT chr1:15901336 3'AG 15901336 Downstream 57bp 28670 chr20 57282190 57282190 1 + G A rs41310841 57282191 + 57282171 57282211 41 ACCCGCAGACTACCATGCCGGGGATGAAGCGAGACTGCGGG ACCCGCAGACTACCATGCCAGGGATGAAGCGAGACTGCGGG < 41bp 0.567918579889324 0.774966770661919 NA NA prediction 0.414096381545191 Functional Gain - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57282191 chr20:57282190 synonymous SNV . 0 20 hm7G_associated_SNPs_31241 0 0 1 0 2 NPEPL1 chr20:57282179 3'AG 57282179 Downstream 12bp 28671 chr20 57282190 57282190 1 + G A rs41310841 57282191 + 57282171 57282211 41 ACCCGCAGACTACCATGCCGGGGATGAAGCGAGACTGCGGG ACCCGCAGACTACCATGCCAGGGATGAAGCGAGACTGCGGG < 41bp 0.567918579889324 0.774966770661919 NA NA prediction 0.414096381545191 Functional Gain - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57282191 chr20:57282190 synonymous SNV . 0 20 hm7G_associated_SNPs_31241 0 0 1 0 2 NPEPL1 chr20:57282256 5'GT 57282256 Upstream 67bp 28672 chr2 218940436 218940436 1 + C T rs79542221 218940437 + 218940417 218940457 41 CCAGAAGGGAGGAGCAAGCCGAGGTGTCCCTGCAGGACGAG CCAGAAGGGAGGAGCAAGCTGAGGTGTCCCTGCAGGACGAG < 41bp 0.513430178388611 0.720474498822936 NA NA prediction 0.414088640868649 Functional Gain - RUFY4 ENSG00000188282 CDS Human protein_coding chr2:218940437 chr2:218940436 synonymous SNV . 0 20 hm7G_associated_SNPs_31243 0 0 0 0 1 RUFY4 chr2:218940463 5'GT 218940463 Upstream 28bp 28673 chr12 13220190 13220190 1 + C T UCEC 13220191 + 13220171 13220211 41 AGAGCCAGAATGGGAAAAGCGAAGATCCATCAACCTGTCTG AGAGCCAGAATGGGAAAAGTGAAGATCCATCAACCTGTCTG < 41bp 0.523795760768708 0.73084006648999 NA NA prediction 0.414088611442565 Functional Gain - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13220191 chr12:13220190 stopgain 1.000 1 20 hm7G_associated_SNPs_31244 0 0 1 2 1 FAM234B chr12:13220230 5'GT 13220230 Upstream 41bp 28674 chr1 156554995 156554995 1 + G A BRCA 156554996 + 156554976 156555016 41 AGAGGTCGGCAAACGTTCCGGTGAGGGCTGGGCCGGGAAGA AGAGGTCGGCAAACGTTCCAGTGAGGGCTGGGCCGGGAAGA < 41bp 0.525804281803257 0.732848248940798 NA NA prediction 0.414087934275082 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156554996 chr1:156554995 synonymous SNV . 0 20 hm7G_associated_SNPs_31247 0 0 0 0 1 TTC24 chr1:156554917 3'AG 156554917 Downstream 79bp 28675 chr11 821676 821676 1 + G A UCEC 821677 + 821657 821697 41 TCTAAAGAGGCCCGGAAGCGGTTCCTGGGCCCCCTGCACCC TCTAAAGAGGCCCGGAAGCAGTTCCTGGGCCCCCTGCACCC < 41bp 0.552029363202236 0.759071097038812 NA NA prediction 0.414083467673154 Functional Gain - PNPLA2 ENSG00000177666 CDS Human protein_coding chr11:821677 chr11:821676 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31249 0 0 1 0 1 PNPLA2 chr11:821628 3'AG 821628 Downstream 49bp 28676 chr12 9002824 9002824 1 + C T GBM 9002825 + 9002805 9002845 41 AGCAGAGGATTCTCAGGTCCGCCAGTACTTCCCAGAGACCT AGCAGAGGATTCTCAGGTCTGCCAGTACTTCCCAGAGACCT < 41bp 0.495323238663668 0.707041678113658 NA NA prediction 0.414083356227317 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9002825 chr12:9002824 nonsynonymous SNV 0.496 3 20 hm7G_associated_SNPs_31250 0 0 0 0 2 A2ML1 chr12:9002756 3'AG 9002756 Downstream 69bp 28677 chr12 9002824 9002824 1 + C T GBM 9002825 + 9002805 9002845 41 AGCAGAGGATTCTCAGGTCCGCCAGTACTTCCCAGAGACCT AGCAGAGGATTCTCAGGTCTGCCAGTACTTCCCAGAGACCT < 41bp 0.495323238663668 0.707041678113658 NA NA prediction 0.414083356227317 Functional Gain - A2ML1 ENSG00000166535 CDS Human protein_coding chr12:9002825 chr12:9002824 nonsynonymous SNV 0.496 3 20 hm7G_associated_SNPs_31250 0 0 0 0 2 A2ML1 chr12:9002870 5'GT 9002870 Upstream 47bp 28678 chr20 61460850 61460850 1 + G A UCEC 61460851 + 61460831 61460871 41 AAAGGCGAGAAGGGAGAACGGGTATGTGGCTGCAGCCGCTT AAAGGCGAGAAGGGAGAACAGGTATGTGGCTGCAGCCGCTT < 41bp 0.585595954089514 0.792635623734764 NA NA prediction 0.4140793392905 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61460851 chr20:61460850 nonsynonymous SNV 0.296 1 20 hm7G_associated_SNPs_31252 0 0 1 0 2 COL9A3 chr20:61460807 3'AG 61460807 Downstream 44bp 28679 chr20 61460850 61460850 1 + G A UCEC 61460851 + 61460831 61460871 41 AAAGGCGAGAAGGGAGAACGGGTATGTGGCTGCAGCCGCTT AAAGGCGAGAAGGGAGAACAGGTATGTGGCTGCAGCCGCTT < 41bp 0.585595954089514 0.792635623734764 NA NA prediction 0.4140793392905 Functional Gain - COL9A3 ENSG00000092758 CDS Human protein_coding chr20:61460851 chr20:61460850 nonsynonymous SNV 0.296 1 20 hm7G_associated_SNPs_31252 0 0 1 0 2 COL9A3 chr20:61460851 5'GT 61460851 Upstream 2bp 28680 chr2 241516004 241516004 1 + G A STAD 241516005 + 241515985 241516025 41 GCCCGCCGCTGGCTGAGCCGGACCTGTCTCAGGGATCCAGC GCCCGCCGCTGGCTGAGCCAGACCTGTCTCAGGGATCCAGC < 41bp 0.54567514169715 0.752714779541116 NA NA prediction 0.41407927568793 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516005 chr2:241516004 synonymous SNV . 0 20 hm7G_associated_SNPs_31253 0 0 1 0 2 RNPEPL1 chr2:241515952 3'AG 241515952 Downstream 53bp 28681 chr2 241516004 241516004 1 + G A STAD 241516005 + 241515985 241516025 41 GCCCGCCGCTGGCTGAGCCGGACCTGTCTCAGGGATCCAGC GCCCGCCGCTGGCTGAGCCAGACCTGTCTCAGGGATCCAGC < 41bp 0.54567514169715 0.752714779541116 NA NA prediction 0.41407927568793 Functional Gain - RNPEPL1 ENSG00000142327 CDS Human protein_coding chr2:241516005 chr2:241516004 synonymous SNV . 0 20 hm7G_associated_SNPs_31253 0 0 1 0 2 RNPEPL1 chr2:241515985 3'AG 241515985 Downstream 20bp 28682 chr17 48187332 48187332 1 + G A COAD 48187333 + 48187313 48187353 41 CTCCCCAGGCCCTGTCCACGGACTCGGTGGAGCGCCTGCCT CTCCCCAGGCCCTGTCCACAGACTCGGTGGAGCGCCTGCCT < 41bp 0.513124245976788 0.720163535392318 NA NA prediction 0.41407857883106 Functional Gain - PDK2 ENSG00000005882 CDS Human protein_coding chr17:48187333 chr17:48187332 synonymous SNV . 0 20 hm7G_associated_SNPs_31254 0 0 0 0 1 PDK2 chr17:48187321 3'AG 48187321 Downstream 12bp 28683 chr10 75557342 75557342 1 + C T CESC 75557343 + 75557323 75557363 41 GCCAGTGGAGGAGCCCGGGCGAAGACTGTTGAAGTTGGCAG GCCAGTGGAGGAGCCCGGGTGAAGACTGTTGAAGTTGGCAG < 41bp 0.514809130293047 0.721843746830732 NA NA prediction 0.414069233075369 Functional Gain - ZSWIM8 ENSG00000214655 CDS Human protein_coding chr10:75557343 chr10:75557342 nonsynonymous SNV 0.975 0 20 hm7G_associated_SNPs_31257 0 0 1 0 1 ZSWIM8 chr10:75557363 5'GT 75557363 Upstream 22bp 28684 chr11 44079911 44079911 1 + C T PRAD 44079912 + 44079892 44079932 41 CACCAATTGCTACCGGCTCCGGGAAGCTCACAAGTACATCA CACCAATTGCTACCGGCTCTGGGAAGCTCACAAGTACATCA < 41bp 0.5122673417489 0.719297477742544 NA NA prediction 0.414060271987289 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44079912 chr11:44079911 nonsynonymous SNV 0.018 2 20 hm7G_associated_SNPs_31259 0 0 0 0 2 ACCSL chr11:44079867 3'AG 44079867 Downstream 45bp 28685 chr11 44079911 44079911 1 + C T PRAD 44079912 + 44079892 44079932 41 CACCAATTGCTACCGGCTCCGGGAAGCTCACAAGTACATCA CACCAATTGCTACCGGCTCTGGGAAGCTCACAAGTACATCA < 41bp 0.5122673417489 0.719297477742544 NA NA prediction 0.414060271987289 Functional Gain - ACCSL ENSG00000205126 CDS Human protein_coding chr11:44079912 chr11:44079911 nonsynonymous SNV 0.018 2 20 hm7G_associated_SNPs_31259 0 0 0 0 2 ACCSL chr11:44080009 5'GT 44080009 Upstream 99bp 28686 chr8 37691340 37691340 1 + C T COAD 37691341 + 37691321 37691361 41 AGAAATTTTTGGGTTATGTCGACCAGATCAAAGAGGTGAGA AGAAATTTTTGGGTTATGTTGACCAGATCAAAGAGGTGAGA < 41bp 0.520014626743021 0.727042828267689 NA NA prediction 0.414056403049335 Functional Gain - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37691341 chr8:37691340 synonymous SNV . 0 20 hm7G_associated_SNPs_31260 0 0 0 0 1 ADGRA2 chr8:37691355 5'GT 37691355 Upstream 16bp 28687 chr16 8729067 8729067 1 + C T SKCM 8729068 + 8729048 8729088 41 GGCAGACTACATCCTGTTCCGACAGGACCTCTTCCGAGGAT GGCAGACTACATCCTGTTCTGACAGGACCTCTTCCGAGGAT < 41bp 0.522334548924348 0.729362537629497 NA NA prediction 0.414055977410297 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8729068 chr16:8729067 stopgain 0.653 0 20 hm7G_associated_SNPs_31261 0 0 1 0 1 METTL22 chr16:8729025 3'AG 8729025 Downstream 43bp 28688 chr4 5798801 5798801 1 + C T COAD 5798802 + 5798782 5798822 41 GCTGTTGCGCTCAGCCCTCCGGAGGCTGGCACTCCGCGGCA GCTGTTGCGCTCAGCCCTCTGGAGGCTGGCACTCCGCGGCA < 41bp 0.52821316372253 0.735241086470064 NA NA prediction 0.414055845495067 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5798802 chr4:5798801 nonsynonymous SNV 0.303 4 20 hm7G_associated_SNPs_31262 0 0 0 0 1 EVC chr4:5798749 3'AG 5798749 Downstream 53bp 28689 chr5 80021291 80021291 1 + C T LUSC 80021292 + 80021272 80021312 41 TGTGCAGGATGACAGAATTCGAGTCGAAAGGATGGATAACA TGTGCAGGATGACAGAATTTGAGTCGAAAGGATGGATAACA < 41bp 0.499606364613473 0.707025700193961 NA NA prediction 0.414051400387922 Functional Gain - MSH3 ENSG00000113318 CDS Human protein_coding chr5:80021292 chr5:80021291 stopgain 1.000 0 20 hm7G_associated_SNPs_31263 0 0 1 0 1 MSH3 chr5:80021384 5'GT 80021384 Upstream 94bp 28690 chr19 14150715 14150715 1 + G A SKCM 14150716 + 14150696 14150736 41 AGATGTCAGGAGGCGGCCTGGACCCTGGTGAGTGCTGGGGT AGATGTCAGGAGGCGGCCTAGACCCTGGTGAGTGCTGGGGT < 41bp 0.530452006287171 0.737477397951727 NA NA prediction 0.414050783329111 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14150716 chr19:14150715 stopgain 0.817 1 20 hm7G_associated_SNPs_31264 0 0 0 0 1 IL27RA chr19:14150722 5'GT 14150722 Upstream 8bp 28691 chr1 22927845 22927845 1 + G A UCEC 22927846 + 22927826 22927866 41 TGACCTCCGAGGGGGCAGCGGTGGCGGTGGGGGCCTCACCG TGACCTCCGAGGGGGCAGCAGTGGCGGTGGGGGCCTCACCG < 41bp 0.521206211926259 0.728229019263032 NA NA prediction 0.414045614673546 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22927846 chr1:22927845 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_31265 0 0 0 0 1 EPHA8 chr1:22927793 3'AG 22927793 Downstream 53bp 28692 chr5 140890560 140890560 1 + G A COAD 140890561 + 140890541 140890581 41 GAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGA GAGGGGGTGCCGGCACCATAGGATTGAGCGCCCGCTACGGA < 41bp 0.532956178371213 0.739978975207698 NA NA prediction 0.41404559367297 Functional Gain - PCDHGA1;PCDHGA10;PCDHGA11;PCDHGA12;PCDHGA2;PCDHGA3;PCDHGA4;PCDHGA5;PCDHGA6;PCDHGA7;PCDHGA8;PCDHGA9;PCDHGB1;PCDHGB2;PCDHGB3;PCDHGB4;PCDHGB5;PCDHGB6;PCDHGB7;PCDHGC3;PCDHGC4;PCDHGC5 ENSG00000081853;ENSG00000204956;ENSG00000240184;ENSG00000240764;ENSG00000242419;ENSG00000253159;ENSG00000253305;ENSG00000253485;ENSG00000253537;ENSG00000253731;ENSG00000253767;ENSG00000253846;ENSG00000253873;ENSG00000253910;ENSG00000253953;ENSG00000254122;ENSG00000254221;ENSG00000254245;ENSG00000261934;ENSG00000262209;ENSG00000262576 CDS Human other chr5:140890561 chr5:140890560 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_31266 0 0 1 0 1 PCDHGA1;PCDHGA10;PCDHGA11;PCDHGA12;PCDHGA2;PCDHGA3;PCDHGA4;PCDHGA5;PCDHGA6;PCDHGA7;PCDHGA8;PCDHGA9;PCDHGB1;PCDHGB2;PCDHGB3;PCDHGB4;PCDHGB5;PCDHGB6;PCDHGB7;PCDHGC3;PCDHGC4;PCDHGC5 chr5:140890514 3'AG 140890514 Downstream 47bp 28693 chr1 230930982 230930982 1 + C T CESC 230930983 + 230930963 230931003 41 AGGAGCTCCAGCTGGACTTCGATGACTTCCTCAACTGCCTG AGGAGCTCCAGCTGGACTTTGATGACTTCCTCAACTGCCTG < 41bp 0.512086997047119 0.719105839928736 NA NA prediction 0.414037685763234 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230930983 chr1:230930982 synonymous SNV . 0 20 hm7G_associated_SNPs_31267 0 0 0 0 2 CAPN9 chr1:230930909 3'AG 230930909 Downstream 74bp 28694 chr1 230930982 230930982 1 + C T CESC 230930983 + 230930963 230931003 41 AGGAGCTCCAGCTGGACTTCGATGACTTCCTCAACTGCCTG AGGAGCTCCAGCTGGACTTTGATGACTTCCTCAACTGCCTG < 41bp 0.512086997047119 0.719105839928736 NA NA prediction 0.414037685763234 Functional Gain - CAPN9 ENSG00000135773 CDS Human protein_coding chr1:230930983 chr1:230930982 synonymous SNV . 0 20 hm7G_associated_SNPs_31267 0 0 0 0 2 CAPN9 chr1:230931025 5'GT 230931025 Upstream 44bp 28695 chr20 2306560 2306560 1 + G A COAD 2306561 + 2306541 2306581 41 GGCCCCTCGTACGGTGGATGGCAGGTGTTGGATGCTACCCC GGCCCCTCGTACGGTGGATAGCAGGTGTTGGATGCTACCCC < 41bp 0.538170966941188 0.745186610085272 NA NA prediction 0.414031286288168 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2306561 chr20:2306560 stopgain 0.984 1 20 hm7G_associated_SNPs_31270 0 0 0 0 2 TGM3 chr20:2306495 3'AG 2306495 Downstream 66bp 28696 chr20 2306560 2306560 1 + G A COAD 2306561 + 2306541 2306581 41 GGCCCCTCGTACGGTGGATGGCAGGTGTTGGATGCTACCCC GGCCCCTCGTACGGTGGATAGCAGGTGTTGGATGCTACCCC < 41bp 0.538170966941188 0.745186610085272 NA NA prediction 0.414031286288168 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2306561 chr20:2306560 stopgain 0.984 1 20 hm7G_associated_SNPs_31270 0 0 0 0 2 TGM3 chr20:2306598 5'GT 2306598 Upstream 39bp 28697 chr14 24642157 24642157 1 + G A UVM 24642158 + 24642138 24642178 41 AGTGCAACCCCCGCAGCCCGGCCTGCCGCGGCCCCGCTTCT AGTGCAACCCCCGCAGCCCAGCCTGCCGCGGCCCCGCTTCT < 41bp 0.581602201848914 0.788616863244724 NA NA prediction 0.414029322791621 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642158 chr14:24642157 nonsynonymous SNV 0.077 1 20 hm7G_associated_SNPs_31272 0 0 0 0 2 REC8 chr14:24642108 3'AG 24642108 Downstream 50bp 28698 chr14 24642157 24642157 1 + G A UVM 24642158 + 24642138 24642178 41 AGTGCAACCCCCGCAGCCCGGCCTGCCGCGGCCCCGCTTCT AGTGCAACCCCCGCAGCCCAGCCTGCCGCGGCCCCGCTTCT < 41bp 0.581602201848914 0.788616863244724 NA NA prediction 0.414029322791621 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642158 chr14:24642157 nonsynonymous SNV 0.077 1 20 hm7G_associated_SNPs_31272 0 0 0 0 2 REC8 chr14:24642250 5'GT 24642250 Upstream 94bp 28699 chr15 90170255 90170255 1 + C T STAD 90170256 + 90170236 90170276 41 TCGCGCTTTCTCCAGGAGGCGCCCCATCAGCAGAACTTATA TCGCGCTTTCTCCAGGAGGTGCCCCATCAGCAGAACTTATA < 41bp 0.502040728546398 0.709049098675123 NA NA prediction 0.41401674025745 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90170256 chr15:90170255 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_31273 0 0 1 0 1 TICRR chr15:90170187 3'AG 90170187 Downstream 69bp 28700 chr11 36424917 36424917 1 + C T rs141071283 36424918 + 36424898 36424938 41 ACGAGCTCTATGCCCTGAACGAAAACATCAGGTATGTGGCA ACGAGCTCTATGCCCTGAATGAAAACATCAGGTATGTGGCA < 41bp 0.518046653524993 0.725052595385238 NA NA prediction 0.414011883720489 Functional Gain - PRR5L ENSG00000135362 CDS Human protein_coding chr11:36424918 chr11:36424917 synonymous SNV . 0 20 hm7G_associated_SNPs_31274 0 0 0 0 1 PRR5L chr11:36424928 5'GT 36424928 Upstream 12bp 28701 chr5 133900286 133900286 1 + G T COAD 133900287 + 133900267 133900307 41 CCTCTGCAAGGAATGCACAGGCACCTGCATCCAGGTATGTG CCTCTGCAAGGAATGCACATGCACCTGCATCCAGGTATGTG < 41bp 0.363569530521367 0.707005691163707 NA NA prediction 0.414011382327414 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133900287 chr5:133900286 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31275 0 0 1 0 1 JADE2 chr5:133900300 5'GT 133900300 Upstream 15bp 28702 chr16 28914209 28914209 1 + C T BLCA 28914210 + 28914190 28914230 41 TGTCCGTGCTGGTGACCATCGAGATGTGCAATGCACTGAAC TGTCCGTGCTGGTGACCATTGAGATGTGCAATGCACTGAAC < 41bp 0.511323604087998 0.71832857528018 NA NA prediction 0.414009942384365 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28914210 chr16:28914209 synonymous SNV . 0 20 hm7G_associated_SNPs_31276 0 0 1 0 1 ATP2A1 chr16:28914232 5'GT 28914232 Upstream 24bp 28703 chr11 61507019 61507019 1 + C T LGG 61507020 + 61507000 61507040 41 GTGACCACCCTGGCCAGCACGCGGCTCTGGACCCACCCCAG GTGACCACCCTGGCCAGCATGCGGCTCTGGACCCACCCCAG < 41bp 0.50369913966989 0.710703263642438 NA NA prediction 0.414008247945095 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61507020 chr11:61507019 nonsynonymous SNV 0.733 1 20 hm7G_associated_SNPs_31278 0 0 0 0 1 DAGLA chr11:61506937 3'AG 61506937 Downstream 83bp 28704 chr17 58504089 58504089 1 + C T GBM 58504090 + 58504070 58504110 41 CCTTTGCAGGATGCTCTGGCGGTTCATCTCCCTCTTCTCGG CCTTTGCAGGATGCTCTGGTGGTTCATCTCCCTCTTCTCGG < 41bp 0.534596916447318 0.741600274605303 NA NA prediction 0.41400671631597 Functional Gain - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58504090 chr17:58504089 nonsynonymous SNV 0.969 2 20 hm7G_associated_SNPs_31279 0 0 0 0 2 C17orf64 chr17:58504079 3'AG 58504079 Downstream 11bp 28705 chr17 58504089 58504089 1 + C T GBM 58504090 + 58504070 58504110 41 CCTTTGCAGGATGCTCTGGCGGTTCATCTCCCTCTTCTCGG CCTTTGCAGGATGCTCTGGTGGTTCATCTCCCTCTTCTCGG < 41bp 0.534596916447318 0.741600274605303 NA NA prediction 0.41400671631597 Functional Gain - C17orf64 ENSG00000141371 CDS Human protein_coding chr17:58504090 chr17:58504089 nonsynonymous SNV 0.969 2 20 hm7G_associated_SNPs_31279 0 0 0 0 2 C17orf64 chr17:58504178 5'GT 58504178 Upstream 90bp 28706 chr16 19056299 19056299 1 + C T PCPG 19056300 + 19056280 19056320 41 ATGACACATGTGACCTTTGCGGCTACAACCAGAAACTCTAC ATGACACATGTGACCTTTGTGGCTACAACCAGAAACTCTAC < 41bp 0.539138162586021 0.746140045023497 NA NA prediction 0.414003764874951 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19056300 chr16:19056299 synonymous SNV . 0 20 hm7G_associated_SNPs_31280 0 0 0 0 2 TMC7 chr16:19056206 3'AG 19056206 Downstream 94bp 28707 chr16 19056299 19056299 1 + C T PCPG 19056300 + 19056280 19056320 41 ATGACACATGTGACCTTTGCGGCTACAACCAGAAACTCTAC ATGACACATGTGACCTTTGTGGCTACAACCAGAAACTCTAC < 41bp 0.539138162586021 0.746140045023497 NA NA prediction 0.414003764874951 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19056300 chr16:19056299 synonymous SNV . 0 20 hm7G_associated_SNPs_31280 0 0 0 0 2 TMC7 chr16:19056323 5'GT 19056323 Upstream 25bp 28708 chr1 22925390 22925390 1 + C T PAAD 22925391 + 22925371 22925411 41 TGCTGAGAGGAGTGGGTGCCGGCATGCGCTACCTCTCAGAC TGCTGAGAGGAGTGGGTGCTGGCATGCGCTACCTCTCAGAC < 41bp 0.525211487033302 0.732213071583222 NA NA prediction 0.41400316909984 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22925391 chr1:22925390 synonymous SNV . 0 20 hm7G_associated_SNPs_31281 0 0 0 0 1 EPHA8 chr1:22925331 3'AG 22925331 Downstream 60bp 28709 chr6 41562610 41562610 1 + C T CESC 41562611 + 41562591 41562631 41 CTTCACTGCACCCACAGAACGCCGTGCGCCACAACCTCAGC CTTCACTGCACCCACAGAATGCCGTGCGCCACAACCTCAGC < 41bp 0.498998921464269 0.707000414508965 NA NA prediction 0.41400082901793 Functional Gain - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41562611 chr6:41562610 synonymous SNV . 0 20 hm7G_associated_SNPs_31284 0 0 0 0 1 FOXP4 chr6:41562608 3'AG 41562608 Downstream 3bp 28710 chr1 1848278 1848278 1 + C T COAD 1848279 + 1848259 1848299 41 CAGGAGAGCGAGCTGAGGGCGGCATTCCGTGTCTTTGACAA CAGGAGAGCGAGCTGAGGGTGGCATTCCGTGTCTTTGACAA < 41bp 0.501790308622863 0.708786216005491 NA NA prediction 0.413991814765255 Functional Gain - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848279 chr1:1848278 nonsynonymous SNV 0.819 2 20 hm7G_associated_SNPs_31286 0 0 0 0 2 CALML6 chr1:1848191 3'AG 1848191 Downstream 88bp 28711 chr1 1848278 1848278 1 + C T COAD 1848279 + 1848259 1848299 41 CAGGAGAGCGAGCTGAGGGCGGCATTCCGTGTCTTTGACAA CAGGAGAGCGAGCTGAGGGTGGCATTCCGTGTCTTTGACAA < 41bp 0.501790308622863 0.708786216005491 NA NA prediction 0.413991814765255 Functional Gain - CALML6 ENSG00000169885 CDS Human protein_coding chr1:1848279 chr1:1848278 nonsynonymous SNV 0.819 2 20 hm7G_associated_SNPs_31286 0 0 0 0 2 CALML6 chr1:1848335 5'GT 1848335 Upstream 58bp 28712 chr1 20680270 20680270 1 + C T rs116705730 20680271 + 20680251 20680291 41 TGTCTCTGCAGCTGGCCTCCGGAGCCTTCCTGCTCAACGAA TGTCTCTGCAGCTGGCCTCTGGAGCCTTCCTGCTCAACGAA < 41bp 0.516099174078611 0.723094993910558 NA NA prediction 0.413991639663894 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20680271 chr1:20680270 synonymous SNV . 0 20 hm7G_associated_SNPs_31287 0 0 0 0 1 VWA5B1 chr1:20680250 3'AG 20680250 Downstream 21bp 28713 chr20 33513521 33513521 1 + G A SKCM 33513522 + 33513502 33513542 41 CTGCCAGCGGGACCAGGATGGCTATTACTGGATCACTGGCA CTGCCAGCGGGACCAGGATAGCTATTACTGGATCACTGGCA < 41bp 0.516802250816717 0.72379594336082 NA NA prediction 0.413987385088206 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513522 chr20:33513521 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31288 0 0 1 2 2 ACSS2 chr20:33513501 3'AG 33513501 Downstream 21bp 28714 chr20 33513521 33513521 1 + G A SKCM 33513522 + 33513502 33513542 41 CTGCCAGCGGGACCAGGATGGCTATTACTGGATCACTGGCA CTGCCAGCGGGACCAGGATAGCTATTACTGGATCACTGGCA < 41bp 0.516802250816717 0.72379594336082 NA NA prediction 0.413987385088206 Functional Gain - ACSS2 ENSG00000131069 CDS Human protein_coding chr20:33513522 chr20:33513521 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31288 0 0 1 2 2 ACSS2 chr20:33513569 5'GT 33513569 Upstream 49bp 28715 chr2 242695307 242695307 1 + G A OV 242695308 + 242695288 242695328 41 ATCACAGAGGCGCTGAGCCGGGATGGCTACGTGTACAAGTA ATCACAGAGGCGCTGAGCCAGGATGGCTACGTGTACAAGTA < 41bp 0.551680837329399 0.758674066692289 NA NA prediction 0.41398645872578 Functional Gain - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242695308 chr2:242695307 nonsynonymous SNV 0.106 0 20 hm7G_associated_SNPs_31289 1 0 1 0 1 D2HGDH chr2:242695264 3'AG 242695264 Downstream 44bp 28716 chr7 111976201 111976201 1 + C T SKCM 111976202 + 111976182 111976222 41 AGTTCAGTTGGAAGATGATCGGGAGTTGCTGGACCATCAGG AGTTCAGTTGGAAGATGATTGGGAGTTGCTGGACCATCAGG < 41bp 0.508753025122658 0.715746233727904 NA NA prediction 0.413986417210491 Functional Gain - ZNF277 ENSG00000198839 CDS Human protein_coding chr7:111976202 chr7:111976201 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_31290 0 0 1 0 1 ZNF277 chr7:111976159 3'AG 111976159 Downstream 43bp 28717 chr1 7895931 7895931 1 + C T UCEC 7895932 + 7895912 7895952 41 AAGAAACATTTCCTAATGTCGCCGAAGAGCCCATCTGGAGA AAGAAACATTTCCTAATGTTGCCGAAGAGCCCATCTGGAGA < 41bp 0.506631677616304 0.71362439775535 NA NA prediction 0.413985440278091 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7895932 chr1:7895931 synonymous SNV . 0 20 hm7G_associated_SNPs_31291 0 0 1 0 1 PER3 chr1:7896005 5'GT 7896005 Upstream 75bp 28718 chr16 88037938 88037938 1 + C T CESC 88037939 + 88037919 88037959 41 AGTAATACTCAACAATGATCGGCAGAACGCCATTGTAGCCA AGTAATACTCAACAATGATTGGCAGAACGCCATTGTAGCCA < 41bp 0.502792555473783 0.709784039980955 NA NA prediction 0.413982969014344 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88037939 chr16:88037938 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_31293 0 0 1 0 1 BANP chr16:88038017 5'GT 88038017 Upstream 80bp 28719 chr22 21242012 21242012 1 + G T UCEC 21242013 + 21241993 21242033 41 CTGAAGGACATAGCCCTGGGGATGCAGACAGAAATTGAGGA CTGAAGGACATAGCCCTGGTGATGCAGACAGAAATTGAGGA < 41bp 0.679683138017708 0.886674132386643 NA NA prediction 0.41398198873787 Functional Gain - SNAP29 ENSG00000099940 CDS Human protein_coding chr22:21242013 chr22:21242012 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31295 0 0 1 0 1 SNAP29 chr22:21241967 3'AG 21241967 Downstream 46bp 28720 chr3 13663282 13663282 1 + C T SARC 13663283 + 13663263 13663303 41 GGCTGCCACTAGACCAAGACGAGTGCCTGATGGGTGCTCAC GGCTGCCACTAGACCAAGATGAGTGCCTGATGGGTGCTCAC < 41bp 0.504752591539462 0.711743093851181 NA NA prediction 0.413981004623438 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13663283 chr3:13663282 synonymous SNV . 0 20 hm7G_associated_SNPs_31296 0 0 0 0 1 FBLN2 chr3:13663275 3'AG 13663275 Downstream 8bp 28721 chr16 67913644 67913644 1 + C T GBM 67913645 + 67913625 67913665 41 CCAAGTTGATGACACCTGACGCCTTCATGACACCTAGCGCC CCAAGTTGATGACACCTGATGCCTTCATGACACCTAGCGCC < 41bp 0.51171807930789 0.7187080907768 NA NA prediction 0.413980022937819 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67913645 chr16:67913644 synonymous SNV . 0 20 hm7G_associated_SNPs_31297 0 0 1 0 1 EDC4 chr16:67913677 5'GT 67913677 Upstream 34bp 28722 chr17 61766927 61766927 1 + C T UCEC 61766928 + 61766908 61766948 41 AAGAACATTTCCCCGAATACGGCGTCATCAAGGCAACTTGT AAGAACATTTCCCCGAATATGGCGTCATCAAGGCAACTTGT < 41bp 0.532793252188035 0.739782888720378 NA NA prediction 0.413979273064685 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61766928 chr17:61766927 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31298 0 0 0 0 1 MAP3K3 chr17:61766904 3'AG 61766904 Downstream 24bp 28723 chr9 109771897 109771897 1 + C T UCEC 109771898 + 109771878 109771918 41 TCCATGTGAATTTTGTGGACGGGCGTTTTCACAGGGCTCTG TCCATGTGAATTTTGTGGATGGGCGTTTTCACAGGGCTCTG < 41bp 0.522675372949248 0.729664963952575 NA NA prediction 0.413979182006654 Functional Gain - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109771898 chr9:109771897 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_31299 0 0 1 0 2 ZNF462 chr9:109771826 3'AG 109771826 Downstream 72bp 28724 chr9 109771897 109771897 1 + C T UCEC 109771898 + 109771878 109771918 41 TCCATGTGAATTTTGTGGACGGGCGTTTTCACAGGGCTCTG TCCATGTGAATTTTGTGGATGGGCGTTTTCACAGGGCTCTG < 41bp 0.522675372949248 0.729664963952575 NA NA prediction 0.413979182006654 Functional Gain - ZNF462 ENSG00000148143 CDS Human protein_coding chr9:109771898 chr9:109771897 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_31299 0 0 1 0 2 ZNF462 chr9:109771949 5'GT 109771949 Upstream 53bp 28725 chr2 232104753 232104753 1 + C T PAAD 232104754 + 232104734 232104774 41 GACTTCACGAGGCCTGGGACGGTGAGGCTCTGCGCTCAGGG GACTTCACGAGGCCTGGGATGGTGAGGCTCTGCGCTCAGGG < 41bp 0.495322856756482 0.706978962515869 NA NA prediction 0.413957925031738 Functional Gain - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232104754 chr2:232104753 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31300 0 0 1 0 2 ARMC9 chr2:232104656 3'AG 232104656 Downstream 98bp 28726 chr2 232104753 232104753 1 + C T PAAD 232104754 + 232104734 232104774 41 GACTTCACGAGGCCTGGGACGGTGAGGCTCTGCGCTCAGGG GACTTCACGAGGCCTGGGATGGTGAGGCTCTGCGCTCAGGG < 41bp 0.495322856756482 0.706978962515869 NA NA prediction 0.413957925031738 Functional Gain - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232104754 chr2:232104753 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31300 0 0 1 0 2 ARMC9 chr2:232104754 5'GT 232104754 Upstream 2bp 28727 chr9 130485513 130485513 1 + C T BRCA 130485514 + 130485494 130485534 41 CAGCAGGCGCGCCAAGATGCGGGGATCCTGGCTGTGCAGGG CAGCAGGCGCGCCAAGATGTGGGGATCCTGGCTGTGCAGGG < 41bp 0.489493085575811 0.706977024465504 NA NA prediction 0.413954048931009 Functional Gain - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130485514 chr9:130485513 nonsynonymous SNV 0.002 4 20 hm7G_associated_SNPs_31302 0 0 0 0 1 TTC16 chr9:130485612 5'GT 130485612 Upstream 100bp 28728 chr22 30769973 30769973 1 + G A rs536316661 30769974 + 30769954 30769994 41 CAGGCGACTACGGACCTGCGGCTAACCATCCTGGAGCTAGA CAGGCGACTACGGACCTGCAGCTAACCATCCTGGAGCTAGA < 41bp 0.47643578790264 0.706976775423155 NA NA prediction 0.413953550846309 Functional Gain - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30769974 chr22:30769973 nonsynonymous SNV 0.866 0 20 hm7G_associated_SNPs_31303 0 0 0 0 1 CCDC157 chr22:30769912 3'AG 30769912 Downstream 62bp 28729 chr12 27842020 27842020 1 + C T STAD 27842021 + 27842001 27842041 41 ACCCAATAAGACTTTGCTGCGAAGACATTTGGCCACTCATT ACCCAATAAGACTTTGCTGTGAAGACATTTGGCCACTCATT < 41bp 0.501831460602538 0.708803912888904 NA NA prediction 0.413944904572731 Functional Gain - PPFIBP1 ENSG00000110841 CDS Human protein_coding chr12:27842021 chr12:27842020 stopgain 0.991 0 20 hm7G_associated_SNPs_31304 0 0 1 0 1 PPFIBP1 chr12:27841948 3'AG 27841948 Downstream 73bp 28730 chr18 32428317 32428317 1 + G T LUAD 32428318 + 32428298 32428338 41 GGCTAATTGCCAGGTATGCGGCAAGGCTGGCAGCAGAGTCC GGCTAATTGCCAGGTATGCTGCAAGGCTGGCAGCAGAGTCC < 41bp 0.412401172599701 0.706970992519947 NA NA prediction 0.413941985039895 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32428318 chr18:32428317 synonymous SNV . 0 20 hm7G_associated_SNPs_31305 0 0 0 0 2 DTNA chr18:32428260 3'AG 32428260 Downstream 58bp 28731 chr18 32428317 32428317 1 + G T LUAD 32428318 + 32428298 32428338 41 GGCTAATTGCCAGGTATGCGGCAAGGCTGGCAGCAGAGTCC GGCTAATTGCCAGGTATGCTGCAAGGCTGGCAGCAGAGTCC < 41bp 0.412401172599701 0.706970992519947 NA NA prediction 0.413941985039895 Functional Gain - DTNA ENSG00000134769 CDS Human protein_coding chr18:32428318 chr18:32428317 synonymous SNV . 0 20 hm7G_associated_SNPs_31305 0 0 0 0 2 DTNA chr18:32428347 5'GT 32428347 Upstream 31bp 28732 chr7 55990939 55990939 1 + C T UCEC 55990940 + 55990920 55990960 41 TGCCCAAAAGAACCTCTATCGAGACGTGATGCTGGAGAACT TGCCCAAAAGAACCTCTATTGAGACGTGATGCTGGAGAACT < 41bp 0.524299828301445 0.73127050732257 NA NA prediction 0.41394135804225 Functional Gain - ZNF713 ENSG00000178665;ENSG00000249773 CDS Human other chr7:55990940 chr7:55990939 stopgain 0.996 0 20 hm7G_associated_SNPs_31306 0 0 0 0 2 ZNF713 chr7:55990855 3'AG 55990855 Downstream 85bp 28733 chr7 55990939 55990939 1 + C T UCEC 55990940 + 55990920 55990960 41 TGCCCAAAAGAACCTCTATCGAGACGTGATGCTGGAGAACT TGCCCAAAAGAACCTCTATTGAGACGTGATGCTGGAGAACT < 41bp 0.524299828301445 0.73127050732257 NA NA prediction 0.41394135804225 Functional Gain - ZNF713 ENSG00000178665;ENSG00000249773 CDS Human other chr7:55990940 chr7:55990939 stopgain 0.996 0 20 hm7G_associated_SNPs_31306 0 0 0 0 2 ZNF713 chr7:55990981 5'GT 55990981 Upstream 43bp 28734 chr19 1053474 1053474 1 + C T GBM 1053475 + 1053455 1053495 41 CTTCCGAGAGCTAGACACGCGGCTGGCGGAGCTGAGGCTCA CTTCCGAGAGCTAGACACGTGGCTGGCGGAGCTGAGGCTCA < 41bp 0.499034940557281 0.706970293787132 NA NA prediction 0.413940587574264 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1053475 chr19:1053474 nonsynonymous SNV 0.007 4 20 hm7G_associated_SNPs_31307 0 0 0 0 1 ABCA7 chr19:1053530 5'GT 1053530 Upstream 57bp 28735 chrX 47969375 47969375 1 + C T OV 47969376 + 47969356 47969396 41 CTGGTGCCATGAACGGAGACGACGCCTTTGCAAAGAGACCC CTGGTGCCATGAACGGAGATGACGCCTTTGCAAAGAGACCC < 41bp 0.50673209228566 0.713701137954125 NA NA prediction 0.413938091336932 Functional Gain - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47969376 chrX:47969375 . . 0 20 hm7G_associated_SNPs_31308 0 0 0 0 2 SSX6 chrX:47969344 3'AG 47969344 Downstream 32bp 28736 chrX 47969375 47969375 1 + C T OV 47969376 + 47969356 47969396 41 CTGGTGCCATGAACGGAGACGACGCCTTTGCAAAGAGACCC CTGGTGCCATGAACGGAGATGACGCCTTTGCAAAGAGACCC < 41bp 0.50673209228566 0.713701137954125 NA NA prediction 0.413938091336932 Functional Gain - SSX6 ENSG00000171483 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:47969376 chrX:47969375 . . 0 20 hm7G_associated_SNPs_31308 0 0 0 0 2 SSX6 chrX:47969432 5'GT 47969432 Upstream 58bp 28737 chr19 19654118 19654118 1 + C T UCEC 19654119 + 19654099 19654139 41 CGGGGCCCACCTGGAGCTGCGGGGACTGCGCCCAGACCAGG CGGGGCCCACCTGGAGCTGTGGGGACTGCGCCCAGACCAGG < 41bp 0.496447453205257 0.706967299481279 NA NA prediction 0.413934598962557 Functional Gain - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19654119 chr19:19654118 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_31309 0 0 0 0 2 CILP2 chr19:19654057 3'AG 19654057 Downstream 62bp 28738 chr19 19654118 19654118 1 + C T UCEC 19654119 + 19654099 19654139 41 CGGGGCCCACCTGGAGCTGCGGGGACTGCGCCCAGACCAGG CGGGGCCCACCTGGAGCTGTGGGGACTGCGCCCAGACCAGG < 41bp 0.496447453205257 0.706967299481279 NA NA prediction 0.413934598962557 Functional Gain - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19654119 chr19:19654118 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_31309 0 0 0 0 2 CILP2 chr19:19654214 5'GT 19654214 Upstream 97bp 28739 chr7 99701747 99701747 1 + C T UCEC 99701748 + 99701728 99701768 41 AAGTTTTTTTGGATGTGGTCGAGAGATTGTCTGTACTGATA AAGTTTTTTTGGATGTGGTTGAGAGATTGTCTGTACTGATA < 41bp 0.517653129344703 0.724619306628647 NA NA prediction 0.413932354567888 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701748 chr7:99701747 synonymous SNV . 0 20 hm7G_associated_SNPs_31310 0 0 1 0 2 AP4M1 chr7:99701715 3'AG 99701715 Downstream 33bp 28740 chr7 99701747 99701747 1 + C T UCEC 99701748 + 99701728 99701768 41 AAGTTTTTTTGGATGTGGTCGAGAGATTGTCTGTACTGATA AAGTTTTTTTGGATGTGGTTGAGAGATTGTCTGTACTGATA < 41bp 0.517653129344703 0.724619306628647 NA NA prediction 0.413932354567888 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99701748 chr7:99701747 synonymous SNV . 0 20 hm7G_associated_SNPs_31310 0 0 1 0 2 AP4M1 chr7:99701777 5'GT 99701777 Upstream 31bp 28741 chr10 12199913 12199913 1 + C T GBM 12199914 + 12199894 12199934 41 TTTCCTTTTTTAGGGATTTCGCGTTGATCTGCCCATTAAGT TTTCCTTTTTTAGGGATTTTGCGTTGATCTGCCCATTAAGT < 41bp 0.521400320255073 0.728365010799083 NA NA prediction 0.41392938108802 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12199914 chr10:12199913 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_31312 0 0 1 0 1 SEC61A2 chr10:12199907 3'AG 12199907 Downstream 7bp 28742 chr7 112112836 112112836 1 + C T UCEC 112112837 + 112112817 112112857 41 TAAGTCAAATGAATTCCTTCGAAATGTATTTGAACTTGGAC TAAGTCAAATGAATTCCTTTGAAATGTATTTGAACTTGGAC < 41bp 0.502259290320376 0.70922351450547 NA NA prediction 0.413928448370187 Functional Gain - IFRD1 ENSG00000006652 CDS Human protein_coding chr7:112112837 chr7:112112836 stopgain 0.998 1 20 hm7G_associated_SNPs_31313 0 0 1 0 1 IFRD1 chr7:112112821 3'AG 112112821 Downstream 16bp 28743 chr2 85270719 85270719 1 + C T UCEC 85270720 + 85270700 85270740 41 GTGCAGCGTTACCTGGAGGCGATCCTAATCATGTCACGGAT GTGCAGCGTTACCTGGAGGTGATCCTAATCATGTCACGGAT < 41bp 0.544414403065232 0.751376649028127 NA NA prediction 0.41392449192579 Functional Gain - KCMF1 ENSG00000176407 CDS Human protein_coding chr2:85270720 chr2:85270719 synonymous SNV . 0 20 hm7G_associated_SNPs_31314 0 0 1 0 1 KCMF1 chr2:85270687 3'AG 85270687 Downstream 33bp 28744 chr3 126676271 126676271 1 + G A rs75184196 126676272 + 126676252 126676292 41 TCTGCAGGCCCCGCAGGGTGGAGCCCGTCTGCTCAGGGTTG TCTGCAGGCCCCGCAGGGTAGAGCCCGTCTGCTCAGGGTTG < 41bp 0.501279794388761 0.708241800280803 NA NA prediction 0.413924011784085 Functional Gain - CHCHD6 ENSG00000159685 CDS Human protein_coding chr3:126676272 chr3:126676271 synonymous SNV . 0 20 hm7G_associated_SNPs_31315 0 0 0 0 1 CHCHD6 chr3:126676259 3'AG 126676259 Downstream 13bp 28745 chr19 30101339 30101339 1 + G A rs11556817 30101340 + 30101320 30101360 41 CAGGAGCACAGCGGGCCGAGGCCTTCGTGAGGGCCTTCCTG CAGGAGCACAGCGGGCCGAAGCCTTCGTGAGGGCCTTCCTG < 41bp 0.580602432339098 0.787563721470845 NA NA prediction 0.413922578263492 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30101340 chr19:30101339 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_31318 0 0 1 0 1 POP4 chr19:30101316 3'AG 30101316 Downstream 24bp 28746 chr4 20482387 20482387 1 + G T LUSC 20482388 + 20482368 20482408 41 TTGAAGATGGGGCATTCAGGGCTCTCCGGGACCTGGAAGTG TTGAAGATGGGGCATTCAGTGCTCTCCGGGACCTGGAAGTG < 41bp 0.364490242855904 0.706959088089002 NA NA prediction 0.413918176178004 Functional Gain - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20482388 chr4:20482387 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_31319 0 0 1 0 2 SLIT2 chr4:20482339 3'AG 20482339 Downstream 49bp 28747 chr4 20482387 20482387 1 + G T LUSC 20482388 + 20482368 20482408 41 TTGAAGATGGGGCATTCAGGGCTCTCCGGGACCTGGAAGTG TTGAAGATGGGGCATTCAGTGCTCTCCGGGACCTGGAAGTG < 41bp 0.364490242855904 0.706959088089002 NA NA prediction 0.413918176178004 Functional Gain - SLIT2 ENSG00000145147 CDS Human protein_coding chr4:20482388 chr4:20482387 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_31319 0 0 1 0 2 SLIT2 chr4:20482410 5'GT 20482410 Upstream 24bp 28748 chr9 133901757 133901757 1 + C T SKCM 133901758 + 133901738 133901778 41 TCTACAAGCGCAGCCGCGCCGACGGCCCATGGGAGCCCTAC TCTACAAGCGCAGCCGCGCTGACGGCCCATGGGAGCCCTAC < 41bp 0.500251861431048 0.707207452863634 NA NA prediction 0.413911182865172 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133901758 chr9:133901757 synonymous SNV . 0 20 hm7G_associated_SNPs_31320 0 0 0 0 1 LAMC3 chr9:133901672 3'AG 133901672 Downstream 86bp 28749 chr20 2616615 2616615 1 + C T STAD 2616616 + 2616596 2616636 41 AGTTTCCAAAAGCCTTTCCCGAGCTAATGCCCAGCTGAGGA AGTTTCCAAAAGCCTTTCCTGAGCTAATGCCCAGCTGAGGA < 41bp 0.525911962658334 0.732867241512858 NA NA prediction 0.413910557709048 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2616616 chr20:2616615 stopgain 0.867 0 20 hm7G_associated_SNPs_31321 0 0 0 0 2 TMC2 chr20:2616572 3'AG 2616572 Downstream 44bp 28750 chr20 2616615 2616615 1 + C T STAD 2616616 + 2616596 2616636 41 AGTTTCCAAAAGCCTTTCCCGAGCTAATGCCCAGCTGAGGA AGTTTCCAAAAGCCTTTCCTGAGCTAATGCCCAGCTGAGGA < 41bp 0.525911962658334 0.732867241512858 NA NA prediction 0.413910557709048 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2616616 chr20:2616615 stopgain 0.867 0 20 hm7G_associated_SNPs_31321 0 0 0 0 2 TMC2 chr20:2616650 5'GT 2616650 Upstream 36bp 28751 chr2 63058226 63058226 1 + C T UCEC 63058227 + 63058207 63058247 41 TTGGCAATTTAGATGACTTCGAAGAAGATAATGAAGATGAT TTGGCAATTTAGATGACTTTGAAGAAGATAATGAAGATGAT < 41bp 0.499933812243005 0.7069548662168 NA NA prediction 0.4139097324336 Functional Gain - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63058227 chr2:63058226 synonymous SNV . 0 20 hm7G_associated_SNPs_31322 0 0 1 0 2 EHBP1 chr2:63058154 3'AG 63058154 Downstream 73bp 28752 chr2 63058226 63058226 1 + C T UCEC 63058227 + 63058207 63058247 41 TTGGCAATTTAGATGACTTCGAAGAAGATAATGAAGATGAT TTGGCAATTTAGATGACTTTGAAGAAGATAATGAAGATGAT < 41bp 0.499933812243005 0.7069548662168 NA NA prediction 0.4139097324336 Functional Gain - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63058227 chr2:63058226 synonymous SNV . 0 20 hm7G_associated_SNPs_31322 0 0 1 0 2 EHBP1 chr2:63058293 5'GT 63058293 Upstream 68bp 28753 chr19 10394931 10394931 1 + G A STAD 10394932 + 10394912 10394952 41 GAGGACGAGGGCACCCAGCGGCTGACGTGTGCAGTAATACT GAGGACGAGGGCACCCAGCAGCTGACGTGTGCAGTAATACT < 41bp 0.530305139935624 0.737252742104823 NA NA prediction 0.413895204338397 Functional Gain - ICAM1 ENSG00000090339 CDS Human protein_coding chr19:10394932 chr19:10394931 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_31323 0 0 1 0 1 ICAM1 chr19:10394996 5'GT 10394996 Upstream 66bp 28754 chr3 120469770 120469770 1 + G T LUSC 120469771 + 120469751 120469791 41 GAGAGAGATTCGACCAACCGGGCTTCCTTCAAATGTCCTGT GAGAGAGATTCGACCAACCTGGCTTCCTTCAAATGTCCTGT < 41bp 0.362194072213449 0.706944276633429 NA NA prediction 0.413888553266857 Functional Gain - GTF2E1 ENSG00000153767 CDS Human protein_coding chr3:120469771 chr3:120469770 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31325 0 0 1 0 1 GTF2E1 chr3:120469847 5'GT 120469847 Upstream 78bp 28755 chr14 21552188 21552188 1 + G T LGG 21552189 + 21552169 21552209 41 GCAGAGACCTGCTGGCCGTGGAGGCGGTGCGTGGCTGTGAG GCAGAGACCTGCTGGCCGTTGAGGCGGTGCGTGGCTGTGAG < 41bp 0.359995993451716 0.706942637750764 NA NA prediction 0.413885275501529 Functional Gain - ARHGEF40 ENSG00000165801 CDS Human protein_coding chr14:21552189 chr14:21552188 synonymous SNV . 0 20 hm7G_associated_SNPs_31327 0 0 1 0 1 ARHGEF40 chr14:21552209 5'GT 21552209 Upstream 22bp 28756 chrX 17065569 17065569 1 + C T LGG 17065570 + 17065550 17065590 41 GTACTATGTCAATCAGTTCCGATCCCTTCAGCCAGACCCAA GTACTATGTCAATCAGTTCTGATCCCTTCAGCCAGACCCAA < 41bp 0.492120925309907 0.706942021185002 NA NA prediction 0.413884042370005 Functional Gain - REPS2 ENSG00000169891 CDS Human protein_coding chrX:17065570 chrX:17065569 stopgain 0.921 0 20 hm7G_associated_SNPs_31328 0 0 0 0 2 REPS2 chrX:17065470 3'AG 17065470 Downstream 100bp 28757 chrX 17065569 17065569 1 + C T LGG 17065570 + 17065550 17065590 41 GTACTATGTCAATCAGTTCCGATCCCTTCAGCCAGACCCAA GTACTATGTCAATCAGTTCTGATCCCTTCAGCCAGACCCAA < 41bp 0.492120925309907 0.706942021185002 NA NA prediction 0.413884042370005 Functional Gain - REPS2 ENSG00000169891 CDS Human protein_coding chrX:17065570 chrX:17065569 stopgain 0.921 0 20 hm7G_associated_SNPs_31328 0 0 0 0 2 REPS2 chrX:17065605 5'GT 17065605 Upstream 37bp 28758 chr11 119027100 119027100 1 + G T COAD 119027101 + 119027081 119027121 41 GAAGTCCCTGGCACAGGGGGGCCGTACCATCATCTGCACCA GAAGTCCCTGGCACAGGGGTGCCGTACCATCATCTGCACCA < 41bp 0.350949480648482 0.706940144432366 NA NA prediction 0.413880288864731 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027101 chr11:119027100 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_31329 0 0 0 0 2 ABCG4 chr11:119027039 3'AG 119027039 Downstream 62bp 28759 chr11 119027100 119027100 1 + G T COAD 119027101 + 119027081 119027121 41 GAAGTCCCTGGCACAGGGGGGCCGTACCATCATCTGCACCA GAAGTCCCTGGCACAGGGGTGCCGTACCATCATCTGCACCA < 41bp 0.350949480648482 0.706940144432366 NA NA prediction 0.413880288864731 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027101 chr11:119027100 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_31329 0 0 0 0 2 ABCG4 chr11:119027162 5'GT 119027162 Upstream 63bp 28760 chr11 117059506 117059506 1 + C T STAD 117059507 + 117059487 117059527 41 ATGACTACGACACATTGACCGACATCGATTCCGACAAGAAT ATGACTACGACACATTGACTGACATCGATTCCGACAAGAAT < 41bp 0.5283625048587 0.735301044570431 NA NA prediction 0.413877079423462 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117059507 chr11:117059506 synonymous SNV . 0 20 hm7G_associated_SNPs_31330 0 0 1 0 3 SIDT2 chr11:117059424 3'AG 117059424 Downstream 83bp 28761 chr11 117059506 117059506 1 + C T STAD 117059507 + 117059487 117059527 41 ATGACTACGACACATTGACCGACATCGATTCCGACAAGAAT ATGACTACGACACATTGACTGACATCGATTCCGACAAGAAT < 41bp 0.5283625048587 0.735301044570431 NA NA prediction 0.413877079423462 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117059507 chr11:117059506 synonymous SNV . 0 20 hm7G_associated_SNPs_31330 0 0 1 0 3 SIDT2 chr11:117059445 3'AG 117059445 Downstream 62bp 28762 chr11 117059506 117059506 1 + C T STAD 117059507 + 117059487 117059527 41 ATGACTACGACACATTGACCGACATCGATTCCGACAAGAAT ATGACTACGACACATTGACTGACATCGATTCCGACAAGAAT < 41bp 0.5283625048587 0.735301044570431 NA NA prediction 0.413877079423462 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117059507 chr11:117059506 synonymous SNV . 0 20 hm7G_associated_SNPs_31330 0 0 1 0 3 SIDT2 chr11:117059542 5'GT 117059542 Upstream 37bp 28763 chr14 105208312 105208312 1 + C T PAAD 105208313 + 105208293 105208333 41 ATACCACACGTGTGGGCATCGGGGCCTTCCCCACCGAGCAG ATACCACACGTGTGGGCATTGGGGCCTTCCCCACCGAGCAG < 41bp 0.538274737082362 0.745209790282408 NA NA prediction 0.413870106400091 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105208313 chr14:105208312 synonymous SNV . 0 20 hm7G_associated_SNPs_31333 0 0 1 1 1 ADSSL1 chr14:105208339 5'GT 105208339 Upstream 28bp 28764 chr21 46912609 46912609 1 + G A rs115470104 46912610 + 46912590 46912630 41 TCTTTCCCCAGGGCCGGCCGGGTTTCGCAGGCTTTCCCGTG TCTTTCCCCAGGGCCGGCCAGGTTTCGCAGGCTTTCCCGTG < 41bp 0.48175880977556 0.70693089566552 NA NA prediction 0.41386179133104 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46912610 chr21:46912609 synonymous SNV . 0 20 hm7G_associated_SNPs_31335 2 0 1 0 2 COL18A1 chr21:46912601 3'AG 46912601 Downstream 9bp 28765 chr21 46912609 46912609 1 + G A rs115470104 46912610 + 46912590 46912630 41 TCTTTCCCCAGGGCCGGCCGGGTTTCGCAGGCTTTCCCGTG TCTTTCCCCAGGGCCGGCCAGGTTTCGCAGGCTTTCCCGTG < 41bp 0.48175880977556 0.70693089566552 NA NA prediction 0.41386179133104 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46912610 chr21:46912609 synonymous SNV . 0 20 hm7G_associated_SNPs_31335 2 0 1 0 2 COL18A1 chr21:46912627 5'GT 46912627 Upstream 19bp 28766 chr13 113893751 113893751 1 + C T HNSC 113893752 + 113893732 113893772 41 TACTGCACATCTCAGGGCTCGACCACTTACTGGATGAGAAC TACTGCACATCTCAGGGCTTGACCACTTACTGGATGAGAAC < 41bp 0.517258201095616 0.72418887651348 NA NA prediction 0.413861350835729 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113893752 chr13:113893751 synonymous SNV . 0 20 hm7G_associated_SNPs_31336 0 0 1 0 1 CUL4A chr13:113893747 3'AG 113893747 Downstream 5bp 28767 chr9 2643179 2643179 1 + C T rs2242105 2643180 + 2643160 2643200 41 GCAATATAACATGTAGTCCCGACGAGTTCACCTGCTCCAGT GCAATATAACATGTAGTCCTGACGAGTTCACCTGCTCCAGT < 41bp 0.520481489487999 0.727411248639218 NA NA prediction 0.413859518302439 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2643180 chr9:2643179 synonymous SNV . 0 20 hm7G_associated_SNPs_31337 2 0 0 1 1 VLDLR chr9:2643160 3'AG 2643160 Downstream 20bp 28768 chr3 184104327 184104327 1 + G A ESCA 184104328 + 184104308 184104348 41 GCGGACTGCGCCTGGAGGCGGCCGGGGCCGAGGGGGTGCGG GCGGACTGCGCCTGGAGGCAGCCGGGGCCGAGGGGGTGCGG < 41bp 0.583945963089219 0.790870838537856 NA NA prediction 0.413849750897273 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184104328 chr3:184104327 synonymous SNV . 0 20 hm7G_associated_SNPs_31340 0 0 1 0 1 CHRD chr3:184104280 3'AG 184104280 Downstream 48bp 28769 chr19 45762442 45762442 1 + C T SKCM 45762443 + 45762423 45762463 41 TCGGCACATCCTCACTGGTCGGGAGGTGAGTATGGGCACAG TCGGCACATCCTCACTGGTTGGGAGGTGAGTATGGGCACAG < 41bp 0.491375568683336 0.706922714961423 NA NA prediction 0.413845429922845 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45762443 chr19:45762442 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_31341 0 0 1 0 1 MARK4 chr19:45762447 5'GT 45762447 Upstream 6bp 28770 chr11 120996563 120996563 1 + C T COAD 120996564 + 120996544 120996584 41 CATTCCAATTGGAGACTGGCGAACCCAGACTGGGTGTGGTA CATTCCAATTGGAGACTGGTGAACCCAGACTGGGTGTGGTA < 41bp 0.494190170558398 0.706920681885556 NA NA prediction 0.413841363771113 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120996564 chr11:120996563 stopgain 0.988 1 20 hm7G_associated_SNPs_31342 0 0 0 0 1 TECTA chr11:120996581 5'GT 120996581 Upstream 19bp 28771 chr1 43130567 43130567 1 + G A UCEC 43130568 + 43130548 43130588 41 AGTCGCCAGTATTTACCGGGGGCCATTTGCAGATGAAAATT AGTCGCCAGTATTTACCGGAGGCCATTTGCAGATGAAAATT < 41bp 0.51921497113868 0.726134219747414 NA NA prediction 0.413838497217467 Functional Gain - PPIH ENSG00000171960 CDS Human protein_coding chr1:43130568 chr1:43130567 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_31344 0 0 1 0 2 PPIH chr1:43130534 3'AG 43130534 Downstream 34bp 28772 chr1 43130567 43130567 1 + G A UCEC 43130568 + 43130548 43130588 41 AGTCGCCAGTATTTACCGGGGGCCATTTGCAGATGAAAATT AGTCGCCAGTATTTACCGGAGGCCATTTGCAGATGAAAATT < 41bp 0.51921497113868 0.726134219747414 NA NA prediction 0.413838497217467 Functional Gain - PPIH ENSG00000171960 CDS Human protein_coding chr1:43130568 chr1:43130567 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_31344 0 0 1 0 2 PPIH chr1:43130626 5'GT 43130626 Upstream 60bp 28773 chr19 14024108 14024108 1 + G A LIHC 14024109 + 14024089 14024129 41 ATGCGGCGCTACGATCGGGGGCTTAAAGTAAGTGGGCAGAG ATGCGGCGCTACGATCGGGAGCTTAAAGTAAGTGGGCAGAG < 41bp 0.547330367014321 0.754248693943267 NA NA prediction 0.413836653857892 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024109 chr19:14024108 nonsynonymous SNV 0.107 5 20 hm7G_associated_SNPs_31345 0 0 1 0 1 CC2D1A chr19:14024115 5'GT 14024115 Upstream 8bp 28774 chr3 184294913 184294913 1 + G A CESC 184294914 + 184294894 184294934 41 AGGCGGTCAACGGTGTCTCGGGCAAGAGCCCTCTGCCGCCT AGGCGGTCAACGGTGTCTCAGGCAAGAGCCCTCTGCCGCCT < 41bp 0.572276979598604 0.779194698407842 NA NA prediction 0.413835437618477 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184294914 chr3:184294913 synonymous SNV . 0 20 hm7G_associated_SNPs_31346 0 0 0 0 1 EPHB3 chr3:184294971 5'GT 184294971 Upstream 59bp 28775 chr21 37572658 37572658 1 + C T STAD 37572659 + 37572639 37572679 41 TTTCCTCTCCTGGCACACGCGGCGGTGTCGGTGAGGCCGGT TTTCCTCTCCTGGCACACGTGGCGGTGTCGGTGAGGCCGGT < 41bp 0.537357655377065 0.744274688341511 NA NA prediction 0.413834065928891 Functional Gain - DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37572659 chr21:37572658 nonsynonymous SNV 0.003 4 20 hm7G_associated_SNPs_31347 0 0 0 0 1 DOPEY2 chr21:37572629 3'AG 37572629 Downstream 30bp 28776 chr17 5998424 5998424 1 + C T UCEC 5998425 + 5998405 5998445 41 CCTCTCTTTTCCCCCAGGGCGGACCGCCACCTACCGCGGAT CCTCTCTTTTCCCCCAGGGTGGACCGCCACCTACCGCGGAT < 41bp 0.491153149670226 0.706915936570293 NA NA prediction 0.413831873140586 Functional Gain - WSCD1 ENSG00000179314 CDS Human protein_coding chr17:5998425 chr17:5998424 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_31348 0 0 0 0 1 WSCD1 chr17:5998422 3'AG 5998422 Downstream 3bp 28777 chr9 33366678 33366678 1 + C T UCEC 33366679 + 33366659 33366699 41 TCCCATGAACAGAGACCACCGCCGGATCATCCATGACTTGG TCCCATGAACAGAGACCACTGCCGGATCATCCATGACTTGG < 41bp 0.528582644877506 0.735497727559689 NA NA prediction 0.413830165364366 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366679 chr9:33366678 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31350 0 0 1 0 2 NFX1 chr9:33366627 3'AG 33366627 Downstream 52bp 28778 chr9 33366678 33366678 1 + C T UCEC 33366679 + 33366659 33366699 41 TCCCATGAACAGAGACCACCGCCGGATCATCCATGACTTGG TCCCATGAACAGAGACCACTGCCGGATCATCCATGACTTGG < 41bp 0.528582644877506 0.735497727559689 NA NA prediction 0.413830165364366 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33366679 chr9:33366678 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31350 0 0 1 0 2 NFX1 chr9:33366772 5'GT 33366772 Upstream 95bp 28779 chr14 52182118 52182118 1 + C T UCEC 52182119 + 52182099 52182139 41 CTACACGGGGTGCCCCATGCGCTCCAGACACCTCCTGCAAC CTACACGGGGTGCCCCATGTGCTCCAGACACCTCCTGCAAC < 41bp 0.510146291828966 0.717060740009562 NA NA prediction 0.413828896361191 Functional Gain - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52182119 chr14:52182118 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_31351 0 0 1 0 2 FRMD6 chr14:52182043 3'AG 52182043 Downstream 76bp 28780 chr14 52182118 52182118 1 + C T UCEC 52182119 + 52182099 52182139 41 CTACACGGGGTGCCCCATGCGCTCCAGACACCTCCTGCAAC CTACACGGGGTGCCCCATGTGCTCCAGACACCTCCTGCAAC < 41bp 0.510146291828966 0.717060740009562 NA NA prediction 0.413828896361191 Functional Gain - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52182119 chr14:52182118 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_31351 0 0 1 0 2 FRMD6 chr14:52182217 5'GT 52182217 Upstream 100bp 28781 chr3 50220987 50220987 1 + G A STAD 50220988 + 50220968 50221008 41 GGGAAGATGCCCTACCCACGGCCGGGCACGGTAAGGACCCC GGGAAGATGCCCTACCCACAGCCGGGCACGGTAAGGACCCC < 41bp 0.563310339607695 0.77022253317462 NA NA prediction 0.41382438713385 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50220988 chr3:50220987 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_31353 0 0 0 0 1 SEMA3F chr3:50220997 5'GT 50220997 Upstream 11bp 28782 chr19 607993 607993 1 + C T CESC 607994 + 607974 608014 41 GGAGTGAACTGTACTCCTTCGCACTCTTCAAGGCCATGAGC GGAGTGAACTGTACTCCTTTGCACTCTTCAAGGCCATGAGC < 41bp 0.505383516264238 0.712289076792226 NA NA prediction 0.413811121055978 Functional Gain - HCN2 ENSG00000099822 CDS Human protein_coding chr19:607994 chr19:607993 synonymous SNV . 0 20 hm7G_associated_SNPs_31356 0 0 0 0 1 HCN2 chr19:607964 3'AG 607964 Downstream 30bp 28783 chr16 28913648 28913648 1 + G A GBM 28913649 + 28913629 28913669 41 ATCATGGACCGCCCCCCCCGGAGCCCCAAGGAGCCCCTCAT ATCATGGACCGCCCCCCCCAGAGCCCCAAGGAGCCCCTCAT < 41bp 0.502896955637023 0.709802388283471 NA NA prediction 0.413810865292896 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28913649 chr16:28913648 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_31357 0 0 0 0 1 ATP2A1 chr16:28913707 5'GT 28913707 Upstream 60bp 28784 chr1 29630380 29630380 1 + C T GBM 29630381 + 29630361 29630401 41 CTGCAGGAGACCAGCGCAGCGGTGGGGTCACTGAGGCCAGC CTGCAGGAGACCAGCGCAGTGGTGGGGTCACTGAGGCCAGC < 41bp 0.492872106316379 0.706905392775171 NA NA prediction 0.413810785550342 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29630381 chr1:29630380 synonymous SNV . 0 20 hm7G_associated_SNPs_31358 0 0 0 0 1 PTPRU chr1:29630367 3'AG 29630367 Downstream 14bp 28785 chr7 44802552 44802552 1 + C T UCEC 44802553 + 44802533 44802573 41 GCAGGGCCTCCTCAAAAAGCGCCTCCTGCCTGCTGAGCACT GCAGGGCCTCCTCAAAAAGTGCCTCCTGCCTGCTGAGCACT < 41bp 0.497376337126243 0.70690375972525 NA NA prediction 0.4138075194505 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44802553 chr7:44802552 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_31359 0 0 1 0 1 ZMIZ2 chr7:44802480 3'AG 44802480 Downstream 73bp 28786 chr22 30802355 30802355 1 + C T STAD 30802356 + 30802336 30802376 41 AGCTTCGACCTGCAGAAGTCGGAGGCCATGCTCCGGAAGGT AGCTTCGACCTGCAGAAGTTGGAGGCCATGCTCCGGAAGGT < 41bp 0.515899667781938 0.722800828433976 NA NA prediction 0.413802321304077 Functional Gain - SEC14L2 ENSG00000100003 CDS Human protein_coding chr22:30802356 chr22:30802355 nonsynonymous SNV 0.979 2 20 hm7G_associated_SNPs_31360 0 0 1 0 2 SEC14L2 chr22:30802331 3'AG 30802331 Downstream 25bp 28787 chr22 30802355 30802355 1 + C T STAD 30802356 + 30802336 30802376 41 AGCTTCGACCTGCAGAAGTCGGAGGCCATGCTCCGGAAGGT AGCTTCGACCTGCAGAAGTTGGAGGCCATGCTCCGGAAGGT < 41bp 0.515899667781938 0.722800828433976 NA NA prediction 0.413802321304077 Functional Gain - SEC14L2 ENSG00000100003 CDS Human protein_coding chr22:30802356 chr22:30802355 nonsynonymous SNV 0.979 2 20 hm7G_associated_SNPs_31360 0 0 1 0 2 SEC14L2 chr22:30802374 5'GT 30802374 Upstream 20bp 28788 chr3 183957225 183957225 1 + C T rs573520996 183957226 + 183957206 183957246 41 CTGGGCCGTCAGCACAGAGCGGCTCTGGCTGGCCGAAGCCT CTGGGCCGTCAGCACAGAGTGGCTCTGGCTGGCCGAAGCCT < 41bp 0.521578623391374 0.728479703428852 NA NA prediction 0.413802160074955 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183957226 chr3:183957225 nonsynonymous SNV 0.154 0 20 hm7G_associated_SNPs_31361 0 0 0 0 1 VWA5B2 chr3:183957182 3'AG 183957182 Downstream 44bp 28789 chr11 73066969 73066969 1 + C T UCEC 73066970 + 73066950 73066990 41 CATGATCAAGCCTGTGCAGCGGATCCCACGCTACGAGCTTC CATGATCAAGCCTGTGCAGTGGATCCCACGCTACGAGCTTC < 41bp 0.536236460130157 0.743132444101061 NA NA prediction 0.413791967941807 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73066970 chr11:73066969 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_31363 0 0 1 0 2 ARHGEF17 chr11:73066906 3'AG 73066906 Downstream 64bp 28790 chr11 73066969 73066969 1 + C T UCEC 73066970 + 73066950 73066990 41 CATGATCAAGCCTGTGCAGCGGATCCCACGCTACGAGCTTC CATGATCAAGCCTGTGCAGTGGATCCCACGCTACGAGCTTC < 41bp 0.536236460130157 0.743132444101061 NA NA prediction 0.413791967941807 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73066970 chr11:73066969 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_31363 0 0 1 0 2 ARHGEF17 chr11:73066998 5'GT 73066998 Upstream 30bp 28791 chr11 117162484 117162484 1 - G A LUAD 117162483 - 117162463 117162503 41 CAGTGGCACCACCAACCTTCGTTTGCCCAAGAAAGTGTTTG CAGTGGCACCACCAACCTTTGTTTGCCCAAGAAAGTGTTTG < 41bp 0.498921487643885 0.706895780316533 NA NA prediction 0.413791560633065 Functional Gain - BACE1 ENSG00000186318 CDS Human protein_coding chr11:117162483 chr11:117162484 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31364 0 0 0 0 1 BACE1 chr11:117162428 5'GT 117162428 Upstream 57bp 28792 chr8 68939478 68939478 1 + C T BRCA 68939479 + 68939459 68939499 41 CTGCATGCTGCTTGGAGGACGGAAGAACACAGATGTTCCCT CTGCATGCTGCTTGGAGGATGGAAGAACACAGATGTTCCCT < 41bp 0.517177056324154 0.724069636778335 NA NA prediction 0.413785160908362 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68939479 chr8:68939478 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31366 0 0 0 0 2 PREX2 chr8:68939457 3'AG 68939457 Downstream 22bp 28793 chr8 68939478 68939478 1 + C T BRCA 68939479 + 68939459 68939499 41 CTGCATGCTGCTTGGAGGACGGAAGAACACAGATGTTCCCT CTGCATGCTGCTTGGAGGATGGAAGAACACAGATGTTCCCT < 41bp 0.517177056324154 0.724069636778335 NA NA prediction 0.413785160908362 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68939479 chr8:68939478 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31366 0 0 0 0 2 PREX2 chr8:68939558 5'GT 68939558 Upstream 81bp 28794 chr20 30418652 30418652 1 + G A UCEC 30418653 + 30418633 30418673 41 CCTGTGTGTCAACACCACCGGGCATTTGGTGAAGATCATTG CCTGTGTGTCAACACCACCAGGCATTTGGTGAAGATCATTG < 41bp 0.541172340489354 0.748059194741372 NA NA prediction 0.413773708504037 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30418653 chr20:30418652 nonsynonymous SNV 0.258 2 20 hm7G_associated_SNPs_31369 0 0 0 0 2 MYLK2 chr20:30418622 3'AG 30418622 Downstream 31bp 28795 chr20 30418652 30418652 1 + G A UCEC 30418653 + 30418633 30418673 41 CCTGTGTGTCAACACCACCGGGCATTTGGTGAAGATCATTG CCTGTGTGTCAACACCACCAGGCATTTGGTGAAGATCATTG < 41bp 0.541172340489354 0.748059194741372 NA NA prediction 0.413773708504037 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30418653 chr20:30418652 nonsynonymous SNV 0.258 2 20 hm7G_associated_SNPs_31369 0 0 0 0 2 MYLK2 chr20:30418692 5'GT 30418692 Upstream 41bp 28796 chr19 4207964 4207964 1 + C T rs61742016 4207965 + 4207945 4207985 41 AGCGCCCCTCCCCACCCAGCGGTATGCAAGCCCCACCTCCC AGCGCCCCTCCCCACCCAGTGGTATGCAAGCCCCACCTCCC < 41bp 0.502328550641076 0.70921008944453 NA NA prediction 0.413763077606908 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4207965 chr19:4207964 synonymous SNV . 0 20 hm7G_associated_SNPs_31370 0 0 0 0 1 ANKRD24 chr19:4207965 5'GT 4207965 Upstream 2bp 28797 chr11 63764545 63764545 1 + G A BLCA 63764546 + 63764526 63764566 41 TGGACCTGATTGAGCAGGTGGAGAAGCAGACCTCTGTCGCC TGGACCTGATTGAGCAGGTAGAGAAGCAGACCTCTGTCGCC < 41bp 0.502024781549926 0.708903871742975 NA NA prediction 0.413758180386098 Functional Gain - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764546 chr11:63764545 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_31372 0 0 1 0 1 OTUB1 chr11:63764522 3'AG 63764522 Downstream 24bp 28798 chr2 119739756 119739756 1 + C T LGG 119739757 + 119739737 119739777 41 CCTGGACTGCAGGGTGTTCCGGGCCCTCCTGGTGCAGTGGG CCTGGACTGCAGGGTGTTCTGGGCCCTCCTGGTGCAGTGGG < 41bp 0.528538602575918 0.735417280620053 NA NA prediction 0.41375735608827 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739757 chr2:119739756 nonsynonymous SNV 0.210 3 20 hm7G_associated_SNPs_31373 0 0 0 0 2 MARCO chr2:119739732 3'AG 119739732 Downstream 25bp 28799 chr2 119739756 119739756 1 + C T LGG 119739757 + 119739737 119739777 41 CCTGGACTGCAGGGTGTTCCGGGCCCTCCTGGTGCAGTGGG CCTGGACTGCAGGGTGTTCTGGGCCCTCCTGGTGCAGTGGG < 41bp 0.528538602575918 0.735417280620053 NA NA prediction 0.41375735608827 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739757 chr2:119739756 nonsynonymous SNV 0.210 3 20 hm7G_associated_SNPs_31373 0 0 0 0 2 MARCO chr2:119739830 5'GT 119739830 Upstream 75bp 28800 chr3 53736791 53736791 1 + C T SKCM 53736792 + 53736772 53736812 41 TCACCCAAGCTGAGGACATCGATCCGGAGAATGAGGAAGAA TCACCCAAGCTGAGGACATTGATCCGGAGAATGAGGAAGAA < 41bp 0.512544509360379 0.719420410835619 NA NA prediction 0.413751802950481 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53736792 chr3:53736791 synonymous SNV . 0 20 hm7G_associated_SNPs_31375 0 0 0 0 1 CACNA1D chr3:53736837 5'GT 53736837 Upstream 47bp 28801 chr2 197521765 197521765 1 + C T UCEC 197521766 + 197521746 197521786 41 TCTCGAAGTTATGAATTTGCGCCAGCAACTGAGAGCTGTAA TCTCGAAGTTATGAATTTGTGCCAGCAACTGAGAGCTGTAA < 41bp 0.525915504997143 0.732788684325776 NA NA prediction 0.413746358657266 Functional Gain - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197521766 chr2:197521765 nonsynonymous SNV 0.989 0 20 hm7G_associated_SNPs_31376 0 0 1 0 2 CCDC150 chr2:197521682 3'AG 197521682 Downstream 84bp 28802 chr2 197521765 197521765 1 + C T UCEC 197521766 + 197521746 197521786 41 TCTCGAAGTTATGAATTTGCGCCAGCAACTGAGAGCTGTAA TCTCGAAGTTATGAATTTGTGCCAGCAACTGAGAGCTGTAA < 41bp 0.525915504997143 0.732788684325776 NA NA prediction 0.413746358657266 Functional Gain - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197521766 chr2:197521765 nonsynonymous SNV 0.989 0 20 hm7G_associated_SNPs_31376 0 0 1 0 2 CCDC150 chr2:197521860 5'GT 197521860 Upstream 96bp 28803 chr2 238990768 238990768 1 + C T UCEC 238990769 + 238990749 238990789 41 CCTCCCATCCTCGTGCACACGGATGCTGCACAGGCCTTGGG CCTCCCATCCTCGTGCACATGGATGCTGCACAGGCCTTGGG < 41bp 0.542091458431244 0.748963892119569 NA NA prediction 0.413744867376651 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990769 chr2:238990768 nonsynonymous SNV 0.461 5 20 hm7G_associated_SNPs_31377 0 0 1 0 2 SCLY chr2:238990686 3'AG 238990686 Downstream 83bp 28804 chr2 238990768 238990768 1 + C T UCEC 238990769 + 238990749 238990789 41 CCTCCCATCCTCGTGCACACGGATGCTGCACAGGCCTTGGG CCTCCCATCCTCGTGCACATGGATGCTGCACAGGCCTTGGG < 41bp 0.542091458431244 0.748963892119569 NA NA prediction 0.413744867376651 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:238990769 chr2:238990768 nonsynonymous SNV 0.461 5 20 hm7G_associated_SNPs_31377 0 0 1 0 2 SCLY chr2:238990850 5'GT 238990850 Upstream 83bp 28805 chr18 9914270 9914270 1 + G T LUAD 9914271 + 9914251 9914291 41 CCGATGGCGTCCGCCTCAGGGGCCATGGCGAAGCACGAGCA CCGATGGCGTCCGCCTCAGTGGCCATGGCGAAGCACGAGCA < 41bp 0.687040062681992 0.893910298044681 NA NA prediction 0.413740470725378 Functional Gain - VAPA ENSG00000101558 CDS Human protein_coding chr18:9914271 chr18:9914270 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31378 0 0 1 0 1 VAPA chr18:9914332 5'GT 9914332 Upstream 63bp 28806 chr11 124749423 124749423 1 + C T SKCM 124749424 + 124749404 124749444 41 AGGACCCCGTGCTCGATTCCGGAAGAAACCCAAGGCTCTTC AGGACCCCGTGCTCGATTCTGGAAGAAACCCAAGGCTCTTC < 41bp 0.515678653137213 0.722547948356517 NA NA prediction 0.413738590438607 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124749424 chr11:124749423 nonsynonymous SNV 0.755 1 20 hm7G_associated_SNPs_31379 0 0 1 0 2 ROBO3 chr11:124749361 3'AG 124749361 Downstream 63bp 28807 chr11 124749423 124749423 1 + C T SKCM 124749424 + 124749404 124749444 41 AGGACCCCGTGCTCGATTCCGGAAGAAACCCAAGGCTCTTC AGGACCCCGTGCTCGATTCTGGAAGAAACCCAAGGCTCTTC < 41bp 0.515678653137213 0.722547948356517 NA NA prediction 0.413738590438607 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124749424 chr11:124749423 nonsynonymous SNV 0.755 1 20 hm7G_associated_SNPs_31379 0 0 1 0 2 ROBO3 chr11:124749471 5'GT 124749471 Upstream 49bp 28808 chr22 39421279 39421279 1 + C T UCEC 39421280 + 39421260 39421300 41 CGCCCGCCTCTACTACTACCGGGATAGAGATTGGCGGTGGG CGCCCGCCTCTACTACTACTGGGATAGAGATTGGCGGTGGG < 41bp 0.519332458677284 0.726199709722912 NA NA prediction 0.413734502091255 Functional Gain - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39421280 chr22:39421279 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_31381 0 0 0 0 1 APOBEC3D chr22:39421354 5'GT 39421354 Upstream 76bp 28809 chr11 123988417 123988417 1 + C T UCEC 123988418 + 123988398 123988438 41 CTGTGAGCGTGAACATTTACGAGTTTGTGGCTGGTGTGTCT CTGTGAGCGTGAACATTTATGAGTTTGTGGCTGGTGTGTCT < 41bp 0.522063816873127 0.728930966104511 NA NA prediction 0.413734298462769 Functional Gain - VWA5A ENSG00000110002 CDS Human protein_coding chr11:123988418 chr11:123988417 synonymous SNV . 0 20 hm7G_associated_SNPs_31382 0 0 1 0 1 VWA5A chr11:123988380 3'AG 123988380 Downstream 38bp 28810 chr13 24233217 24233217 1 + C T UCEC 24233218 + 24233198 24233238 41 AGGTCAACCTCGTGAAGATCGCGTCCACGGCCTCCAGCCCA AGGTCAACCTCGTGAAGATTGCGTCCACGGCCTCCAGCCCA < 41bp 0.525728055209706 0.732593999624402 NA NA prediction 0.413731888829393 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24233218 chr13:24233217 synonymous SNV . 0 20 hm7G_associated_SNPs_31383 0 0 1 0 1 TNFRSF19 chr13:24233189 3'AG 24233189 Downstream 29bp 28811 chr7 100189522 100189522 1 + G T COAD 100189523 + 100189503 100189543 41 TGTTGTGTCGTGGAGCCAAGGATGTGAGTAGCAGAACCCTG TGTTGTGTCGTGGAGCCAATGATGTGAGTAGCAGAACCCTG < 41bp 0.700782322865662 0.907645700118822 NA NA prediction 0.41372675450632 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100189523 chr7:100189522 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_31384 0 0 0 0 1 FBXO24 chr7:100189525 5'GT 100189525 Upstream 4bp 28812 chr20 42168905 42168905 1 + C T UCEC 42168906 + 42168886 42168926 41 AAGCTCCTGCCAGGAGTAGCGGGCATCTCAGCCTCGACAGT AAGCTCCTGCCAGGAGTAGTGGGCATCTCAGCCTCGACAGT < 41bp 0.494546925440477 0.706862856028582 NA NA prediction 0.413725712057164 Functional Gain - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42168906 chr20:42168905 nonsynonymous SNV 0.964 3 20 hm7G_associated_SNPs_31385 0 0 1 0 1 L3MBTL1 chr20:42168948 5'GT 42168948 Upstream 44bp 28813 chr8 51449284 51449284 1 + G T LUAD 51449285 + 51449265 51449305 41 ACGTCTCCAGGCTTGAGGTGGGAGAAGCGATGGTGCGACCT ACGTCTCCAGGCTTGAGGTTGGAGAAGCGATGGTGCGACCT < 41bp 0.419368727015559 0.706862371498727 NA NA prediction 0.413724742997454 Functional Gain - SNTG1 ENSG00000147481 CDS Human protein_coding chr8:51449285 chr8:51449284 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_31386 0 0 0 0 2 SNTG1 chr8:51449238 3'AG 51449238 Downstream 47bp 28814 chr8 51449284 51449284 1 + G T LUAD 51449285 + 51449265 51449305 41 ACGTCTCCAGGCTTGAGGTGGGAGAAGCGATGGTGCGACCT ACGTCTCCAGGCTTGAGGTTGGAGAAGCGATGGTGCGACCT < 41bp 0.419368727015559 0.706862371498727 NA NA prediction 0.413724742997454 Functional Gain - SNTG1 ENSG00000147481 CDS Human protein_coding chr8:51449285 chr8:51449284 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_31386 0 0 0 0 2 SNTG1 chr8:51449368 5'GT 51449368 Upstream 85bp 28815 chr22 42377818 42377818 1 + C T SKCM 42377819 + 42377799 42377839 41 AGACCATGAAGACCGGTTTCGACTTCAACATCATGGTCGTT AGACCATGAAGACCGGTTTTGACTTCAACATCATGGTCGTT < 41bp 0.530367689814684 0.737229104754129 NA NA prediction 0.413722829878891 Functional Gain - SEPT3 ENSG00000100167 CDS Human protein_coding chr22:42377819 chr22:42377818 synonymous SNV . 0 20 hm7G_associated_SNPs_31388 0 0 1 0 1 SEPT3 chr22:42377840 5'GT 42377840 Upstream 23bp 28816 chr11 64029997 64029997 1 + C T UCEC 64029998 + 64029978 64030018 41 ACCCCTTCACTGAGGTCATCGTGGATGGCATCGTGGCCAAT ACCCCTTCACTGAGGTCATTGTGGATGGCATCGTGGCCAAT < 41bp 0.498498487327667 0.706860861902445 NA NA prediction 0.413721723804889 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64029998 chr11:64029997 synonymous SNV . 0 20 hm7G_associated_SNPs_31390 0 0 1 0 1 PLCB3 chr11:64030033 5'GT 64030033 Upstream 37bp 28817 chr3 9712787 9712787 1 + C T UCEC 9712788 + 9712768 9712808 41 CTATGACATCAAGCTGCTTCGATACCTGTCAGTCAAATACA CTATGACATCAAGCTGCTTTGATACCTGTCAGTCAAATACA < 41bp 0.51906926886526 0.725930105747614 NA NA prediction 0.413721673764707 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9712788 chr3:9712787 stopgain 0.999 1 20 hm7G_associated_SNPs_31391 0 0 1 1 2 MTMR14 chr3:9712732 3'AG 9712732 Downstream 56bp 28818 chr3 9712787 9712787 1 + C T UCEC 9712788 + 9712768 9712808 41 CTATGACATCAAGCTGCTTCGATACCTGTCAGTCAAATACA CTATGACATCAAGCTGCTTTGATACCTGTCAGTCAAATACA < 41bp 0.51906926886526 0.725930105747614 NA NA prediction 0.413721673764707 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9712788 chr3:9712787 stopgain 0.999 1 20 hm7G_associated_SNPs_31391 0 0 1 1 2 MTMR14 chr3:9712854 5'GT 9712854 Upstream 68bp 28819 chr5 75950040 75950040 1 + C T LUSC 75950041 + 75950021 75950061 41 TCAGATTCAGTCCTGGTTCCGAATGGCAACTGCAAGAAAGA TCAGATTCAGTCCTGGTTCTGAATGGCAACTGCAAGAAAGA < 41bp 0.50407234627042 0.710932390332418 NA NA prediction 0.413720088123997 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75950041 chr5:75950040 stopgain 0.993 1 20 hm7G_associated_SNPs_31392 0 0 1 0 2 IQGAP2 chr5:75950025 3'AG 75950025 Downstream 16bp 28820 chr5 75950040 75950040 1 + C T LUSC 75950041 + 75950021 75950061 41 TCAGATTCAGTCCTGGTTCCGAATGGCAACTGCAAGAAAGA TCAGATTCAGTCCTGGTTCTGAATGGCAACTGCAAGAAAGA < 41bp 0.50407234627042 0.710932390332418 NA NA prediction 0.413720088123997 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75950041 chr5:75950040 stopgain 0.993 1 20 hm7G_associated_SNPs_31392 0 0 1 0 2 IQGAP2 chr5:75950096 5'GT 75950096 Upstream 57bp 28821 chr17 78219991 78219991 1 + C T UCEC 78219992 + 78219972 78220012 41 TCGGGGGTGTGCACCCCGGCGGGGGGCCTGGTGACGGGTAA TCGGGGGTGTGCACCCCGGTGGGGGGCCTGGTGACGGGTAA < 41bp 0.532480776840777 0.739340046234633 NA NA prediction 0.413718538787712 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219992 chr17:78219991 nonsynonymous SNV 0.280 4 20 hm7G_associated_SNPs_31393 0 0 1 0 2 SLC26A11 chr17:78219953 3'AG 78219953 Downstream 39bp 28822 chr17 78219991 78219991 1 + C T UCEC 78219992 + 78219972 78220012 41 TCGGGGGTGTGCACCCCGGCGGGGGGCCTGGTGACGGGTAA TCGGGGGTGTGCACCCCGGTGGGGGGCCTGGTGACGGGTAA < 41bp 0.532480776840777 0.739340046234633 NA NA prediction 0.413718538787712 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219992 chr17:78219991 nonsynonymous SNV 0.280 4 20 hm7G_associated_SNPs_31393 0 0 1 0 2 SLC26A11 chr17:78220008 5'GT 78220008 Upstream 18bp 28823 chr1 40229424 40229424 1 - C T PAAD 40229423 - 40229403 40229443 41 GGCCGGCAGGTCTGCCGTCGGCACGAGCTCTACGTCAGCTT GGCCGGCAGGTCTGCCGTCAGCACGAGCTCTACGTCAGCTT < 41bp 0.567923085620096 0.774781264316097 NA NA prediction 0.413716357392002 Functional Gain - BMP8B ENSG00000116985 CDS Human other chr1:40229423 chr1:40229424 nonsynonymous SNV 0.806 4 20 hm7G_associated_SNPs_31394 0 0 0 0 2 BMP8B;PPIE chr1:40229384 5'GT 40229384 Upstream 41bp 28824 chr1 40229424 40229424 1 - C T PAAD 40229423 - 40229403 40229443 41 GGCCGGCAGGTCTGCCGTCGGCACGAGCTCTACGTCAGCTT GGCCGGCAGGTCTGCCGTCAGCACGAGCTCTACGTCAGCTT < 41bp 0.567923085620096 0.774781264316097 NA NA prediction 0.413716357392002 Functional Gain - BMP8B ENSG00000116985 CDS Human protein_coding chr1:40229423 chr1:40229424 nonsynonymous SNV 0.806 4 20 hm7G_associated_SNPs_31394 0 0 0 0 2 BMP8B chr1:40229463 3'AG 40229463 Downstream 40bp 28825 chr6 47763056 47763056 1 + G A UCEC 47763057 + 47763037 47763077 41 CCATGCCCTTGGTAGGTCTGGGGGACTACGTACCTGAGCCC CCATGCCCTTGGTAGGTCTAGGGGACTACGTACCTGAGCCC < 41bp 0.497171094143815 0.706857982871785 NA NA prediction 0.41371596574357 Functional Gain - OPN5 ENSG00000124818 CDS Human protein_coding chr6:47763057 chr6:47763056 synonymous SNV . 0 20 hm7G_associated_SNPs_31395 0 0 0 0 1 OPN5 chr6:47762965 3'AG 47762965 Downstream 92bp 28826 chr11 64329843 64329843 1 + C T ESCA 64329844 + 64329824 64329864 41 CGGCCTGGCCTTTGCCCTGCGGGACTGGAGGACTCTCCAGC CGGCCTGGCCTTTGCCCTGTGGGACTGGAGGACTCTCCAGC < 41bp 0.52627018278973 0.733127815184613 NA NA prediction 0.413715264789764 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329844 chr11:64329843 nonsynonymous SNV 0.450 3 20 hm7G_associated_SNPs_31396 0 0 0 0 1 SLC22A11 chr11:64329907 5'GT 64329907 Upstream 65bp 28827 chr12 112892398 112892398 1 + C T GBM 112892399 + 112892379 112892419 41 CGACGTTGGTGGAGGAGAACGGTTTGATTCTTTGACAGATC CGACGTTGGTGGAGGAGAATGGTTTGATTCTTTGACAGATC < 41bp 0.502496365529601 0.709348640918724 NA NA prediction 0.413704550778246 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112892399 chr12:112892398 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31398 2 0 1 0 2 PTPN11 chr12:112892368 3'AG 112892368 Downstream 31bp 28828 chr12 112892398 112892398 1 + C T GBM 112892399 + 112892379 112892419 41 CGACGTTGGTGGAGGAGAACGGTTTGATTCTTTGACAGATC CGACGTTGGTGGAGGAGAATGGTTTGATTCTTTGACAGATC < 41bp 0.502496365529601 0.709348640918724 NA NA prediction 0.413704550778246 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112892399 chr12:112892398 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31398 2 0 1 0 2 PTPN11 chr12:112892484 5'GT 112892484 Upstream 87bp 28829 chr12 6435620 6435620 1 + G A LUAD 6435621 + 6435601 6435641 41 TACAGAAGCTGAAGGCAGAGGAGTATGTTCAACAGAAGAGG TACAGAAGCTGAAGGCAGAAGAGTATGTTCAACAGAAGAGG < 41bp 0.498442218969683 0.706851126683044 NA NA prediction 0.413702253366087 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6435621 chr12:6435620 synonymous SNV . 0 20 hm7G_associated_SNPs_31399 0 0 0 0 1 PLEKHG6 chr12:6435594 3'AG 6435594 Downstream 27bp 28830 chr11 64029898 64029898 1 + C T COAD 64029899 + 64029879 64029919 41 ATGTGGCGATGCAGCTCAACGCGGGCGTTTTTGAGTACAAC ATGTGGCGATGCAGCTCAATGCGGGCGTTTTTGAGTACAAC < 41bp 0.516463949875871 0.723314906017051 NA NA prediction 0.413701912282361 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64029899 chr11:64029898 synonymous SNV . 0 20 hm7G_associated_SNPs_31400 0 0 0 0 1 PLCB3 chr11:64029879 3'AG 64029879 Downstream 20bp 28831 chr7 133943049 133943049 1 + C T SKCM 133943050 + 133943030 133943070 41 CATGAAATGTTCATTGTTTCGGTTCTGTCCGTGGTCAAAAG CATGAAATGTTCATTGTTTTGGTTCTGTCCGTGGTCAAAAG < 41bp 0.508850118281082 0.715700488991169 NA NA prediction 0.413700741420173 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133943050 chr7:133943049 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_31401 0 0 0 0 1 LRGUK chr7:133943009 3'AG 133943009 Downstream 41bp 28832 chr3 183756161 183756161 1 + C T UCEC 183756162 + 183756142 183756182 41 AACAAGAAATTCTAGGTGGCGCCTCTGGCCCTCATGCAGAC AACAAGAAATTCTAGGTGGTGCCTCTGGCCCTCATGCAGAC < 41bp 0.501774002893531 0.708624139771871 NA NA prediction 0.41370027375668 Functional Gain - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183756162 chr3:183756161 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_31402 0 0 0 0 1 HTR3D chr3:183756157 3'AG 183756157 Downstream 5bp 28833 chr15 44127315 44127315 1 + C T CESC 44127316 + 44127296 44127336 41 TGAAGAACATATCAGAAAACGCAGACTTTTTTGCTTCTCTT TGAAGAACATATCAGAAAATGCAGACTTTTTTGCTTCTCTT < 41bp 0.510600420643978 0.717449129616333 NA NA prediction 0.41369741794471 Functional Gain - WDR76 ENSG00000092470 CDS Human protein_coding chr15:44127316 chr15:44127315 synonymous SNV . 0 20 hm7G_associated_SNPs_31403 0 0 1 0 2 WDR76 chr15:44127259 3'AG 44127259 Downstream 57bp 28834 chr15 44127315 44127315 1 + C T CESC 44127316 + 44127296 44127336 41 TGAAGAACATATCAGAAAACGCAGACTTTTTTGCTTCTCTT TGAAGAACATATCAGAAAATGCAGACTTTTTTGCTTCTCTT < 41bp 0.510600420643978 0.717449129616333 NA NA prediction 0.41369741794471 Functional Gain - WDR76 ENSG00000092470 CDS Human protein_coding chr15:44127316 chr15:44127315 synonymous SNV . 0 20 hm7G_associated_SNPs_31403 0 0 1 0 2 WDR76 chr15:44127348 5'GT 44127348 Upstream 34bp 28835 chr15 51687148 51687148 1 + G T UCEC 51687149 + 51687129 51687169 41 GGGAGAAAAGGGTGACAAAGGAGATGTGTCCAACGACGTGC GGGAGAAAAGGGTGACAAATGAGATGTGTCCAACGACGTGC < 41bp 0.351270373148523 0.706848319115361 NA NA prediction 0.413696638230722 Functional Gain - GLDN ENSG00000186417 CDS Human protein_coding chr15:51687149 chr15:51687148 stopgain 1.000 1 20 hm7G_associated_SNPs_31404 0 0 0 0 1 GLDN chr15:51687178 5'GT 51687178 Upstream 31bp 28836 chr19 41596066 41596066 1 + C T GBM 41596067 + 41596047 41596087 41 GAACGCATCCAGGAGGAGGCGGGCTTCCTCATCGACGCCCT GAACGCATCCAGGAGGAGGTGGGCTTCCTCATCGACGCCCT < 41bp 0.501436160720591 0.708282983539748 NA NA prediction 0.413693645638313 Functional Gain - CYP2A13 ENSG00000197838 CDS Human protein_coding chr19:41596067 chr19:41596066 nonsynonymous SNV 0.280 2 20 hm7G_associated_SNPs_31405 0 0 0 0 1 CYP2A13 chr19:41596101 5'GT 41596101 Upstream 36bp 28837 chr22 21237824 21237824 1 + C T GBM 21237825 + 21237805 21237845 41 CCCAAAGAACCCACACCTTCGAGCCTATCACCAGAAGATCG CCCAAAGAACCCACACCTTTGAGCCTATCACCAGAAGATCG < 41bp 0.515605198714662 0.72245158286654 NA NA prediction 0.413692768303755 Functional Gain - SNAP29 ENSG00000099940 CDS Human protein_coding chr22:21237825 chr22:21237824 stopgain 0.969 1 20 hm7G_associated_SNPs_31406 0 0 1 0 2 SNAP29 chr22:21237759 3'AG 21237759 Downstream 66bp 28838 chr22 21237824 21237824 1 + C T GBM 21237825 + 21237805 21237845 41 CCCAAAGAACCCACACCTTCGAGCCTATCACCAGAAGATCG CCCAAAGAACCCACACCTTTGAGCCTATCACCAGAAGATCG < 41bp 0.515605198714662 0.72245158286654 NA NA prediction 0.413692768303755 Functional Gain - SNAP29 ENSG00000099940 CDS Human protein_coding chr22:21237825 chr22:21237824 stopgain 0.969 1 20 hm7G_associated_SNPs_31406 0 0 1 0 2 SNAP29 chr22:21237857 5'GT 21237857 Upstream 34bp 28839 chr3 73096445 73096445 1 + C T LGG 73096446 + 73096426 73096466 41 GTCCTCCCAACCCTAATGTCGAATATATTCCCTTTGATGAA GTCCTCCCAACCCTAATGTTGAATATATTCCCTTTGATGAA < 41bp 0.502275452602043 0.709120220233176 NA NA prediction 0.413689535262265 Functional Gain - PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73096446 chr3:73096445 synonymous SNV . 0 20 hm7G_associated_SNPs_31409 0 0 1 0 1 PPP4R2 chr3:73096507 5'GT 73096507 Upstream 63bp 28840 chr7 30921881 30921881 1 + C T UCS 30921882 + 30921862 30921902 41 ATCCTCTTTAGCCTGCAGCCGGGGCTCCTGCGTGACTGGAG ATCCTCTTTAGCCTGCAGCTGGGGCTCCTGCGTGACTGGAG < 41bp 0.543824917136418 0.750666954236868 NA NA prediction 0.4136840742009 Functional Gain - MINDY4 ENSG00000106125;ENSG00000240583;ENSG00000250424 CDS Human other chr7:30921882 chr7:30921881 nonsynonymous SNV 0.061 0 20 hm7G_associated_SNPs_31411 0 0 0 0 2 MINDY4 chr7:30921796 3'AG 30921796 Downstream 86bp 28841 chr7 30921881 30921881 1 + C T UCS 30921882 + 30921862 30921902 41 ATCCTCTTTAGCCTGCAGCCGGGGCTCCTGCGTGACTGGAG ATCCTCTTTAGCCTGCAGCTGGGGCTCCTGCGTGACTGGAG < 41bp 0.543824917136418 0.750666954236868 NA NA prediction 0.4136840742009 Functional Gain - MINDY4 ENSG00000106125;ENSG00000240583;ENSG00000250424 CDS Human other chr7:30921882 chr7:30921881 nonsynonymous SNV 0.061 0 20 hm7G_associated_SNPs_31411 0 0 0 0 2 MINDY4 chr7:30921976 5'GT 30921976 Upstream 96bp 28842 chr3 11061919 11061919 1 + C T COAD 11061920 + 11061900 11061940 41 CACTGCCGTGGAAACAGTGCGACAACCCCTGGAACACAGAC CACTGCCGTGGAAACAGTGTGACAACCCCTGGAACACAGAC < 41bp 0.520432333408172 0.727274082165386 NA NA prediction 0.413683497514429 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11061920 chr3:11061919 synonymous SNV . 0 20 hm7G_associated_SNPs_31412 0 0 1 0 2 SLC6A1 chr3:11061899 3'AG 11061899 Downstream 21bp 28843 chr3 11061919 11061919 1 + C T COAD 11061920 + 11061900 11061940 41 CACTGCCGTGGAAACAGTGCGACAACCCCTGGAACACAGAC CACTGCCGTGGAAACAGTGTGACAACCCCTGGAACACAGAC < 41bp 0.520432333408172 0.727274082165386 NA NA prediction 0.413683497514429 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11061920 chr3:11061919 synonymous SNV . 0 20 hm7G_associated_SNPs_31412 0 0 1 0 2 SLC6A1 chr3:11062008 5'GT 11062008 Upstream 90bp 28844 chr19 16620383 16620383 1 + C T UCEC 16620384 + 16620364 16620404 41 TCCACTGGGCAGGATGCCCCGAGGCAGGCCCAGGCGAGGAG TCCACTGGGCAGGATGCCCTGAGGCAGGCCCAGGCGAGGAG < 41bp 0.51264387092218 0.719485507166796 NA NA prediction 0.413683272489232 Functional Gain - C19orf44 ENSG00000105072 CDS Human protein_coding chr19:16620384 chr19:16620383 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_31413 0 0 1 0 1 C19orf44 chr19:16620310 3'AG 16620310 Downstream 74bp 28845 chrX 70347909 70347909 1 + C T COAD 70347910 + 70347890 70347930 41 TAGTGAGAACCCTGCTAACCGCTACAGCTTTGTCTGCAATG TAGTGAGAACCCTGCTAACTGCTACAGCTTTGTCTGCAATG < 41bp 0.517799099202298 0.72464012773304 NA NA prediction 0.413682057061484 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70347910 chrX:70347909 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31414 0 0 1 0 1 MED12 chrX:70347970 5'GT 70347970 Upstream 62bp 28846 chr5 133896593 133896593 1 + C T UCEC 133896594 + 133896574 133896614 41 TGTGTCGCTCTCCTGAGGGCGAGGATGGCAACGAGATGGTC TGTGTCGCTCTCCTGAGGGTGAGGATGGCAACGAGATGGTC < 41bp 0.491514213955671 0.706839117028536 NA NA prediction 0.413678234057071 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133896594 chr5:133896593 synonymous SNV . 0 20 hm7G_associated_SNPs_31416 0 0 1 0 1 JADE2 chr5:133896647 5'GT 133896647 Upstream 55bp 28847 chrX 37642818 37642818 1 + C T CESC 37642819 + 37642799 37642839 41 GATTCTCTTGCCAGTCTGTCGAAATCTGCTGTCCTTCCTCA GATTCTCTTGCCAGTCTGTTGAAATCTGCTGTCCTTCCTCA < 41bp 0.522230536204874 0.729067485583222 NA NA prediction 0.413673898756696 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37642819 chrX:37642818 stopgain 1.000 1 20 hm7G_associated_SNPs_31418 2 0 0 1 1 CYBB chrX:37642853 5'GT 37642853 Upstream 36bp 28848 chr7 128846410 128846410 1 + G T UCEC 128846411 + 128846391 128846431 41 CCTGGTGCTCATCGTGGGAGGCTACTTCCTCATCCGAGGTG CCTGGTGCTCATCGTGGGATGCTACTTCCTCATCCGAGGTG < 41bp 0.345524839356428 0.706836450974833 NA NA prediction 0.413672901949666 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128846411 chr7:128846410 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31420 0 0 1 0 1 SMO chr7:128846428 5'GT 128846428 Upstream 19bp 28849 chr9 125861012 125861012 1 + C T UCEC 125861013 + 125860993 125861033 41 GTTAAAAGAAATGTGCCGTCGGGAACTCGACAAGGCAGAAT GTTAAAAGAAATGTGCCGTTGGGAACTCGACAAGGCAGAAT < 41bp 0.508749572877122 0.715584323622281 NA NA prediction 0.413669501490319 Functional Gain - RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125861013 chr9:125861012 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_31421 0 0 1 0 2 RABGAP1 chr9:125860994 3'AG 125860994 Downstream 19bp 28850 chr9 125861012 125861012 1 + C T UCEC 125861013 + 125860993 125861033 41 GTTAAAAGAAATGTGCCGTCGGGAACTCGACAAGGCAGAAT GTTAAAAGAAATGTGCCGTTGGGAACTCGACAAGGCAGAAT < 41bp 0.508749572877122 0.715584323622281 NA NA prediction 0.413669501490319 Functional Gain - RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125861013 chr9:125861012 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_31421 0 0 1 0 2 RABGAP1 chr9:125861077 5'GT 125861077 Upstream 66bp 28851 chr22 41922401 41922401 1 + C T STAD 41922402 + 41922382 41922422 41 CGGCAAGGCCAACTCCGTGCGCAATGCCGTCACTCAGGAGT CGGCAAGGCCAACTCCGTGTGCAATGCCGTCACTCAGGAGT < 41bp 0.520412614984464 0.727247176264979 NA NA prediction 0.413669122561031 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41922402 chr22:41922401 nonsynonymous SNV 0.965 2 20 hm7G_associated_SNPs_31422 0 0 1 0 1 ACO2 chr22:41922457 5'GT 41922457 Upstream 57bp 28852 chr1 46740246 46740246 1 + G A CESC 46740247 + 46740227 46740267 41 CATGCTGAGCAGCAAAGCTGGGGGCTGTGGCCTCAATCTCA CATGCTGAGCAGCAAAGCTAGGGGCTGTGGCCTCAATCTCA < 41bp 0.503837029856499 0.710668801872562 NA NA prediction 0.413663544032126 Functional Gain - RAD54L ENSG00000085999 CDS Human protein_coding chr1:46740247 chr1:46740246 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31423 0 0 1 0 1 RAD54L chr1:46740210 3'AG 46740210 Downstream 37bp 28853 chr12 9085945 9085945 1 + C T COAD 9085946 + 9085926 9085966 41 ATGCAGTCTGTGCACTTGCCGGTGAGTGATGTCTGATGGTT ATGCAGTCTGTGCACTTGCTGGTGAGTGATGTCTGATGGTT < 41bp 0.539120204736787 0.74595158764043 NA NA prediction 0.413662765807285 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9085946 chr12:9085945 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_31424 0 0 1 0 2 PHC1 chr12:9085851 3'AG 9085851 Downstream 95bp 28854 chr12 9085945 9085945 1 + C T COAD 9085946 + 9085926 9085966 41 ATGCAGTCTGTGCACTTGCCGGTGAGTGATGTCTGATGGTT ATGCAGTCTGTGCACTTGCTGGTGAGTGATGTCTGATGGTT < 41bp 0.539120204736787 0.74595158764043 NA NA prediction 0.413662765807285 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9085946 chr12:9085945 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_31424 0 0 1 0 2 PHC1 chr12:9085946 5'GT 9085946 Upstream 2bp 28855 chr14 56645166 56645166 1 + C T COAD 56645167 + 56645147 56645187 41 ACCGTCCATGTGATATCCACGCCCCAGGCATCCAAGGTAGG ACCGTCCATGTGATATCCATGCCCCAGGCATCCAAGGTAGG < 41bp 0.516623698623178 0.723449667623498 NA NA prediction 0.41365193800064 Functional Gain - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56645167 chr14:56645166 nonsynonymous SNV 0.550 4 20 hm7G_associated_SNPs_31426 0 0 0 0 1 PELI2 chr14:56645182 5'GT 56645182 Upstream 17bp 28856 chr5 23524485 23524485 1 + G A rs188381798 23524486 + 23524466 23524506 41 ATGAAGAGCAGAACCTGGTGGCCTTCCAGTACCACAGGCAG ATGAAGAGCAGAACCTGGTAGCCTTCCAGTACCACAGGCAG < 41bp 0.528186300712781 0.735011791196981 NA NA prediction 0.4136509809684 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23524486 chr5:23524485 synonymous SNV . 0 20 hm7G_associated_SNPs_31427 0 0 0 0 1 PRDM9 chr5:23524443 3'AG 23524443 Downstream 43bp 28857 chr1 11589929 11589929 1 + G A SKCM 11589930 + 11589910 11589950 41 CGGCGGTGCGGCCACTAGTGGATACCGGGGCCATGGTCTTT CGGCGGTGCGGCCACTAGTAGATACCGGGGCCATGGTCTTT < 41bp 0.522634402160337 0.729453931939188 NA NA prediction 0.413639059557703 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589930 chr1:11589929 synonymous SNV . 0 20 hm7G_associated_SNPs_31429 0 0 0 0 2 DISP3 chr1:11589844 3'AG 11589844 Downstream 86bp 28858 chr1 11589929 11589929 1 + G A SKCM 11589930 + 11589910 11589950 41 CGGCGGTGCGGCCACTAGTGGATACCGGGGCCATGGTCTTT CGGCGGTGCGGCCACTAGTAGATACCGGGGCCATGGTCTTT < 41bp 0.522634402160337 0.729453931939188 NA NA prediction 0.413639059557703 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589930 chr1:11589929 synonymous SNV . 0 20 hm7G_associated_SNPs_31429 0 0 0 0 2 DISP3 chr1:11590016 5'GT 11590016 Upstream 88bp 28859 chr6 35423550 35423550 1 + G A LGG 35423551 + 35423531 35423571 41 CTGTTGCTGCGATTGCCCCGGATATGCCAGAGGAACCTGAT CTGTTGCTGCGATTGCCCCAGATATGCCAGAGGAACCTGAT < 41bp 0.510273121903529 0.717091856845402 NA NA prediction 0.413637469883745 Functional Gain - FANCE ENSG00000112039 CDS Human protein_coding chr6:35423551 chr6:35423550 nonsynonymous SNV 0.186 0 20 hm7G_associated_SNPs_31430 0 0 1 0 1 FANCE chr6:35423524 3'AG 35423524 Downstream 27bp 28860 chr16 56711065 56711065 1 + G A rs148206622 56711066 + 56711046 56711086 41 TGGGAATCGCAGGGAGCGGGGGTGCTGGGCTGAGTCAGAGG TGGGAATCGCAGGGAGCGGAGGTGCTGGGCTGAGTCAGAGG < 41bp 0.518724038926355 0.725542687944523 NA NA prediction 0.413637298036336 Functional Gain - MT1IP ENSG00000205358;ENSG00000187193 intergenic Human other chr16:56711066 chr16:56711065 . . 0 20 hm7G_associated_SNPs_31431 0 0 0 0 1 MT1IP chr16:56710983 3'AG 56710983 Downstream 83bp 28861 chr17 7752972 7752972 1 + G T HNSC 7752973 + 7752953 7752993 41 AGACCTTTATCGCCTCTGAGGTGGAAGAGCGGCGGCTGCGC AGACCTTTATCGCCTCTGATGTGGAAGAGCGGCGGCTGCGC < 41bp 0.371700143090898 0.706816790722911 NA NA prediction 0.413633581445823 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7752973 chr17:7752972 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_31432 0 0 1 0 1 KDM6B chr17:7753046 5'GT 7753046 Upstream 75bp 28862 chr6 158318002 158318002 1 + C T rs144271439 158318003 + 158317983 158318023 41 ACAACTGGGACACTGCCTTCGGCCACCCCCAGGCCTACCAA ACAACTGGGACACTGCCTTTGGCCACCCCCAGGCCTACCAA < 41bp 0.522943243659842 0.729760019596975 NA NA prediction 0.413633551874265 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158318003 chr6:158318002 synonymous SNV . 0 20 hm7G_associated_SNPs_31433 0 0 1 0 1 SNX9 chr6:158318030 5'GT 158318030 Upstream 29bp 28863 chr20 17208109 17208109 1 + C T COAD 17208110 + 17208090 17208130 41 GCCAAGTTGCAGCAGAACACGGCTTTGGAGTCCGAAAGGTA GCCAAGTTGCAGCAGAACATGGCTTTGGAGTCCGAAAGGTA < 41bp 0.510538895786674 0.717353176236626 NA NA prediction 0.413628560899904 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17208110 chr20:17208109 synonymous SNV . 0 20 hm7G_associated_SNPs_31436 0 0 0 0 1 PCSK2 chr20:17208127 5'GT 17208127 Upstream 19bp 28864 chr3 37725431 37725431 1 + C T SKCM 37725432 + 37725412 37725452 41 ACATCTCTATCTCCAACCTCGGAGATGATGCCTATGATGCC ACATCTCTATCTCCAACCTTGGAGATGATGCCTATGATGCC < 41bp 0.498703971113343 0.706812099634707 NA NA prediction 0.413624199269415 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37725432 chr3:37725431 synonymous SNV . 0 20 hm7G_associated_SNPs_31438 0 0 0 0 2 ITGA9 chr3:37725356 3'AG 37725356 Downstream 76bp 28865 chr3 37725431 37725431 1 + C T SKCM 37725432 + 37725412 37725452 41 ACATCTCTATCTCCAACCTCGGAGATGATGCCTATGATGCC ACATCTCTATCTCCAACCTTGGAGATGATGCCTATGATGCC < 41bp 0.498703971113343 0.706812099634707 NA NA prediction 0.413624199269415 Functional Gain - ITGA9 ENSG00000144668 CDS Human protein_coding chr3:37725432 chr3:37725431 synonymous SNV . 0 20 hm7G_associated_SNPs_31438 0 0 0 0 2 ITGA9 chr3:37725506 5'GT 37725506 Upstream 76bp 28866 chr1 180151344 180151344 1 + G A rs201802561 180151345 + 180151325 180151365 41 CCCAGCACAAAGGCGTGGCGGTGCGCAGGGTGCTGAACACA CCCAGCACAAAGGCGTGGCAGTGCGCAGGGTGCTGAACACA < 41bp 0.560661654217352 0.767473697251236 NA NA prediction 0.413624086067768 Functional Gain - QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180151345 chr1:180151344 synonymous SNV . 0 20 hm7G_associated_SNPs_31439 0 0 1 0 1 QSOX1 chr1:180151309 3'AG 180151309 Downstream 36bp 28867 chr6 71562298 71562298 1 + C T UCEC 71562299 + 71562279 71562319 41 CAACGGTGCCACCCCTGAACGATGATCTGGACATCTTTGGA CAACGGTGCCACCCCTGAATGATGATCTGGACATCTTTGGA < 41bp 0.493450079327188 0.706811682308732 NA NA prediction 0.413623364617464 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71562299 chr6:71562298 synonymous SNV . 0 20 hm7G_associated_SNPs_31440 0 0 1 0 2 SMAP1 chr6:71562243 3'AG 71562243 Downstream 56bp 28868 chr6 71562298 71562298 1 + C T UCEC 71562299 + 71562279 71562319 41 CAACGGTGCCACCCCTGAACGATGATCTGGACATCTTTGGA CAACGGTGCCACCCCTGAATGATGATCTGGACATCTTTGGA < 41bp 0.493450079327188 0.706811682308732 NA NA prediction 0.413623364617464 Functional Gain - SMAP1 ENSG00000112305 CDS Human protein_coding chr6:71562299 chr6:71562298 synonymous SNV . 0 20 hm7G_associated_SNPs_31440 0 0 1 0 2 SMAP1 chr6:71562367 5'GT 71562367 Upstream 70bp 28869 chr13 96086182 96086182 1 + C T LUAD 96086183 + 96086163 96086203 41 AATGAGTGGAAAGTGACCACGCGAGCCTCCTCGGTGATAAC AATGAGTGGAAAGTGACCATGCGAGCCTCCTCGGTGATAAC < 41bp 0.51265507019824 0.719463877899277 NA NA prediction 0.413617615402075 Functional Gain - CLDN10 ENSG00000134873 CDS Human protein_coding chr13:96086183 chr13:96086182 nonsynonymous SNV 0.860 3 20 hm7G_associated_SNPs_31443 0 0 0 0 1 CLDN10 chr13:96086244 5'GT 96086244 Upstream 63bp 28870 chr1 153659126 153659126 1 + G A READ 153659127 + 153659107 153659147 41 TGGTCCCACTTGCAGATGCGGGATGTGCAGAATGAACACCT TGGTCCCACTTGCAGATGCAGGATGTGCAGAATGAACACCT < 41bp 0.516694087329847 0.723500719187019 NA NA prediction 0.413613263714343 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153659127 chr1:153659126 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_31444 0 0 1 0 1 NPR1 chr1:153659122 3'AG 153659122 Downstream 5bp 28871 chr8 17409463 17409463 1 + C T COAD 17409464 + 17409444 17409484 41 GTCCTGCCAAATATGTCGTCGCAGCTGGTTCTCTCTGCGCC GTCCTGCCAAATATGTCGTTGCAGCTGGTTCTCTCTGCGCC < 41bp 0.543544739328381 0.750349352831596 NA NA prediction 0.41360922700643 Functional Gain - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17409464 chr8:17409463 synonymous SNV . 0 20 hm7G_associated_SNPs_31446 0 0 1 0 1 SLC7A2 chr8:17409495 5'GT 17409495 Upstream 33bp 28872 chr10 129536881 129536881 1 + G A CESC 129536882 + 129536862 129536902 41 GGAGAGCTGAAGCCAGCGCGGCCGTGCGCTCGGGAGCCAGG GGAGAGCTGAAGCCAGCGCAGCCGTGCGCTCGGGAGCCAGG < 41bp 0.573287464434413 0.780085952859007 NA NA prediction 0.413596976849188 Functional Gain - FOXI2 ENSG00000186766 CDS Human protein_coding chr10:129536882 chr10:129536881 synonymous SNV . 0 20 hm7G_associated_SNPs_31448 0 0 0 0 1 FOXI2 chr10:129536784 3'AG 129536784 Downstream 98bp 28873 chr7 128850354 128850354 1 + G A BLCA 128850355 + 128850335 128850375 41 GCACCTGGGTCTGGACCAAGGCCACGCTGCTCATCTGGAGG GCACCTGGGTCTGGACCAAAGCCACGCTGCTCATCTGGAGG < 41bp 0.476636527656293 0.706797582458275 NA NA prediction 0.413595164916549 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128850355 chr7:128850354 synonymous SNV . 0 20 hm7G_associated_SNPs_31449 0 0 1 0 1 SMO chr7:128850389 5'GT 128850389 Upstream 36bp 28874 chr20 56138665 56138665 1 + G A rs28359546 56138666 + 56138646 56138686 41 GTGAGAAGAAGTACCTGGCGGCCGCATTTCCCAGCGCCTGC GTGAGAAGAAGTACCTGGCAGCCGCATTTCCCAGCGCCTGC < 41bp 0.532071688364132 0.738869103808585 NA NA prediction 0.413594830888905 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56138666 chr20:56138665 synonymous SNV . 0 20 hm7G_associated_SNPs_31450 0 0 1 0 1 PCK1 chr20:56138621 3'AG 56138621 Downstream 45bp 28875 chr11 64694238 64694238 1 + G A CESC 64694239 + 64694219 64694259 41 CGGAAGCTGGCCCAGTGTGGGGTGATGTTTGACTTCTTGGA CGGAAGCTGGCCCAGTGTGAGGTGATGTTTGACTTCTTGGA < 41bp 0.536340861710309 0.743137194014521 NA NA prediction 0.413592664608426 Functional Gain - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64694239 chr11:64694238 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_31451 0 0 1 0 1 PPP2R5B chr11:64694184 3'AG 64694184 Downstream 55bp 28876 chr19 41518244 41518244 1 + C T rs34826503 41518245 + 41518225 41518265 41 ACAGGTGATTGGCCCACATCGCCCTCCAGAGCTTCATGACC ACAGGTGATTGGCCCACATTGCCCTCCAGAGCTTCATGACC < 41bp 0.508198738569899 0.714994539653582 NA NA prediction 0.413591602167365 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41518245 chr19:41518244 nonsynonymous SNV 0.228 2 20 hm7G_associated_SNPs_31452 0 0 0 0 1 CYP2B6 chr19:41518203 3'AG 41518203 Downstream 42bp 28877 chr15 73996299 73996299 1 + C T SKCM 73996300 + 73996280 73996320 41 CACCTGCTTCGTGAGCATCCGGGATTTCGGCAGCGCTGCCG CACCTGCTTCGTGAGCATCTGGGATTTCGGCAGCGCTGCCG < 41bp 0.518551472570334 0.725341107265619 NA NA prediction 0.41357926939057 Functional Gain - CD276 ENSG00000103855 CDS Human protein_coding chr15:73996300 chr15:73996299 nonsynonymous SNV 0.962 3 20 hm7G_associated_SNPs_31454 0 0 0 0 1 CD276 chr15:73996338 5'GT 73996338 Upstream 40bp 28878 chr20 25249816 25249816 1 + G T KIRC 25249817 + 25249797 25249837 41 AGAAGAAGATGCTGGCCTTGGGAATGGAGGCCTGGGGAGGC AGAAGAAGATGCTGGCCTTTGGAATGGAGGCCTGGGGAGGC < 41bp 0.711640466051971 0.918426320649537 NA NA prediction 0.413571709195134 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25249817 chr20:25249816 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_31456 0 0 1 0 2 PYGB chr20:25249765 3'AG 25249765 Downstream 52bp 28879 chr20 25249816 25249816 1 + G T KIRC 25249817 + 25249797 25249837 41 AGAAGAAGATGCTGGCCTTGGGAATGGAGGCCTGGGGAGGC AGAAGAAGATGCTGGCCTTTGGAATGGAGGCCTGGGGAGGC < 41bp 0.711640466051971 0.918426320649537 NA NA prediction 0.413571709195134 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25249817 chr20:25249816 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_31456 0 0 1 0 2 PYGB chr20:25249843 5'GT 25249843 Upstream 28bp 28880 chr9 72879294 72879294 1 + C T COAD 72879295 + 72879275 72879315 41 GCCAATGGAACAGGGAAGTCGAGCATTGTGTGTGCCATTTG GCCAATGGAACAGGGAAGTTGAGCATTGTGTGTGCCATTTG < 41bp 0.504393602840132 0.711178780418552 NA NA prediction 0.413570355156841 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72879295 chr9:72879294 nonsynonymous SNV 0.958 5 20 hm7G_associated_SNPs_31457 0 0 1 0 2 SMC5 chr9:72879220 3'AG 72879220 Downstream 75bp 28881 chr9 72879294 72879294 1 + C T COAD 72879295 + 72879275 72879315 41 GCCAATGGAACAGGGAAGTCGAGCATTGTGTGTGCCATTTG GCCAATGGAACAGGGAAGTTGAGCATTGTGTGTGCCATTTG < 41bp 0.504393602840132 0.711178780418552 NA NA prediction 0.413570355156841 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72879295 chr9:72879294 nonsynonymous SNV 0.958 5 20 hm7G_associated_SNPs_31457 0 0 1 0 2 SMC5 chr9:72879361 5'GT 72879361 Upstream 68bp 28882 chr11 63072158 63072158 1 + G T COAD 63072159 + 63072139 63072179 41 TATTGTTATTTATCTGTAGGGCAAGAGCTTCAGGAATAGAT TATTGTTATTTATCTGTAGTGCAAGAGCTTCAGGAATAGAT < 41bp 0.39681605162287 0.706784186459656 NA NA prediction 0.413568372919313 Functional Gain - SLC22A10 ENSG00000184999 CDS Human protein_coding chr11:63072159 chr11:63072158 nonsynonymous SNV 0.010 4 20 hm7G_associated_SNPs_31459 0 0 0 3 1 SLC22A10 chr11:63072158 3'AG 63072158 Downstream 1bp 28883 chr14 96871121 96871121 1 + C T LUSC 96871122 + 96871102 96871142 41 TCGAGAAGACCTTCTCATGCGCCTGCTGGAGTGTGATGTTA TCGAGAAGACCTTCTCATGTGCCTGCTGGAGTGTGATGTTA < 41bp 0.519285131552317 0.726068372077519 NA NA prediction 0.413566481050403 Functional Gain - AK7 ENSG00000140057 CDS Human protein_coding chr14:96871122 chr14:96871121 nonsynonymous SNV 0.643 0 20 hm7G_associated_SNPs_31461 0 0 0 0 2 AK7 chr14:96871094 3'AG 96871094 Downstream 28bp 28884 chr14 96871121 96871121 1 + C T LUSC 96871122 + 96871102 96871142 41 TCGAGAAGACCTTCTCATGCGCCTGCTGGAGTGTGATGTTA TCGAGAAGACCTTCTCATGTGCCTGCTGGAGTGTGATGTTA < 41bp 0.519285131552317 0.726068372077519 NA NA prediction 0.413566481050403 Functional Gain - AK7 ENSG00000140057 CDS Human protein_coding chr14:96871122 chr14:96871121 nonsynonymous SNV 0.643 0 20 hm7G_associated_SNPs_31461 0 0 0 0 2 AK7 chr14:96871202 5'GT 96871202 Upstream 82bp 28885 chr17 72281244 72281244 1 + G A LUSC 72281245 + 72281225 72281265 41 TCGAGGGGGGCTGGCCCAAGGACGTGAACCCCCTGGAGCTG TCGAGGGGGGCTGGCCCAAAGACGTGAACCCCCTGGAGCTG < 41bp 0.555126624468861 0.761908760175231 NA NA prediction 0.41356427141274 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72281245 chr17:72281244 synonymous SNV . 0 20 hm7G_associated_SNPs_31463 0 0 0 0 2 DNAI2 chr17:72281179 3'AG 72281179 Downstream 66bp 28886 chr17 72281244 72281244 1 + G A LUSC 72281245 + 72281225 72281265 41 TCGAGGGGGGCTGGCCCAAGGACGTGAACCCCCTGGAGCTG TCGAGGGGGGCTGGCCCAAAGACGTGAACCCCCTGGAGCTG < 41bp 0.555126624468861 0.761908760175231 NA NA prediction 0.41356427141274 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72281245 chr17:72281244 synonymous SNV . 0 20 hm7G_associated_SNPs_31463 0 0 0 0 2 DNAI2 chr17:72281340 5'GT 72281340 Upstream 97bp 28887 chr11 17633836 17633836 1 + G A COAD 17633837 + 17633817 17633857 41 ATCCTGGGCCTCGCCGTGCGGGTGGGTGGGGACCGCTGCTG ATCCTGGGCCTCGCCGTGCAGGTGGGTGGGGACCGCTGCTG < 41bp 0.492223071729183 0.706780519178028 NA NA prediction 0.413561038356055 Functional Gain - OTOG ENSG00000188162 CDS Human protein_coding chr11:17633837 chr11:17633836 nonsynonymous SNV 0.963 3 20 hm7G_associated_SNPs_31465 0 0 0 0 1 OTOG chr11:17633877 5'GT 17633877 Upstream 42bp 28888 chr16 67683468 67683468 1 + G A GBM 67683469 + 67683449 67683489 41 ATCAGCGGCAACGCCATGGGGGACGCGGGCGCCAAGTTGCT ATCAGCGGCAACGCCATGGAGGACGCGGGCGCCAAGTTGCT < 41bp 0.47351809266128 0.706780023264721 NA NA prediction 0.413560046529442 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67683469 chr16:67683468 nonsynonymous SNV 0.940 3 20 hm7G_associated_SNPs_31466 0 0 0 0 1 CARMIL2 chr16:67683522 5'GT 67683522 Upstream 55bp 28889 chr2 239013420 239013420 1 + C T UCEC 239013421 + 239013401 239013441 41 ACGTGCACCTTCGTGCTCTCGATGGCATGAGCGCCCTGCAC ACGTGCACCTTCGTGCTCTTGATGGCATGAGCGCCCTGCAC < 41bp 0.520299764353269 0.727076479378526 NA NA prediction 0.413553430050513 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239013421 chr2:239013420 synonymous SNV . 0 20 hm7G_associated_SNPs_31467 0 0 0 0 1 ESPNL chr2:239013483 5'GT 239013483 Upstream 64bp 28890 chr3 39178786 39178786 1 + C T COAD 39178787 + 39178767 39178807 41 CTCCAGCCAGACCCAGCTGCGGCTGCTGCAGGGCCTCTGCC CTCCAGCCAGACCCAGCTGTGGCTGCTGCAGGGCCTCTGCC < 41bp 0.489260930998852 0.706775105106002 NA NA prediction 0.413550210212004 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39178787 chr3:39178786 nonsynonymous SNV 0.905 2 20 hm7G_associated_SNPs_31468 0 0 0 0 1 TTC21A chr3:39178878 5'GT 39178878 Upstream 93bp 28891 chr1 11897555 11897555 1 + C T UCEC 11897556 + 11897536 11897576 41 TGTTACTCTGAAAGCCAGTCGGTAAGTCTCTCCGAGGCAGA TGTTACTCTGAAAGCCAGTTGGTAAGTCTCTCCGAGGCAGA < 41bp 0.537949662829836 0.744724073729981 NA NA prediction 0.41354882180029 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897556 chr1:11897555 nonsynonymous SNV 0.747 2 20 hm7G_associated_SNPs_31469 0 0 1 0 1 CLCN6 chr1:11897556 5'GT 11897556 Upstream 2bp 28892 chr10 103988611 103988611 1 + C T LUSC 103988612 + 103988592 103988632 41 CTTCATCATCCTGCGTAAGCGGCCACTCATCTTTATTCACT CTTCATCATCCTGCGTAAGTGGCCACTCATCTTTATTCACT < 41bp 0.514358844635334 0.721132364907963 NA NA prediction 0.413547040545259 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103988612 chr10:103988611 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31470 0 0 0 0 1 ELOVL3 chr10:103988582 3'AG 103988582 Downstream 30bp 28893 chr9 127616566 127616566 1 + G A UCEC 127616567 + 127616547 127616587 41 GTGTATGGCTGGGAGACCCGGAGTGGGCAGCTGCTGTGGAG GTGTATGGCTGGGAGACCCAGAGTGGGCAGCTGCTGTGGAG < 41bp 0.540518593870878 0.747291338713781 NA NA prediction 0.413545489685807 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127616567 chr9:127616566 nonsynonymous SNV 0.885 0 20 hm7G_associated_SNPs_31471 0 0 0 0 3 WDR38 chr9:127616484 3'AG 127616484 Downstream 83bp 28894 chr9 127616566 127616566 1 + G A UCEC 127616567 + 127616547 127616587 41 GTGTATGGCTGGGAGACCCGGAGTGGGCAGCTGCTGTGGAG GTGTATGGCTGGGAGACCCAGAGTGGGCAGCTGCTGTGGAG < 41bp 0.540518593870878 0.747291338713781 NA NA prediction 0.413545489685807 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127616567 chr9:127616566 nonsynonymous SNV 0.885 0 20 hm7G_associated_SNPs_31471 0 0 0 0 3 WDR38 chr9:127616517 3'AG 127616517 Downstream 50bp 28895 chr9 127616566 127616566 1 + G A UCEC 127616567 + 127616547 127616587 41 GTGTATGGCTGGGAGACCCGGAGTGGGCAGCTGCTGTGGAG GTGTATGGCTGGGAGACCCAGAGTGGGCAGCTGCTGTGGAG < 41bp 0.540518593870878 0.747291338713781 NA NA prediction 0.413545489685807 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127616567 chr9:127616566 nonsynonymous SNV 0.885 0 20 hm7G_associated_SNPs_31471 0 0 0 0 3 WDR38 chr9:127616604 5'GT 127616604 Upstream 39bp 28896 chr10 104157744 104157744 1 + C T LGG 104157745 + 104157725 104157765 41 TCCCACTCCATAGAATCTCCGGGGGCATCAAACCTGAAGAT TCCCACTCCATAGAATCTCTGGGGGCATCAAACCTGAAGAT < 41bp 0.512404429497928 0.71917618762877 NA NA prediction 0.413543516261683 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157745 chr10:104157744 nonsynonymous SNV 0.143 4 20 hm7G_associated_SNPs_31473 0 0 1 0 2 NFKB2 chr10:104157738 3'AG 104157738 Downstream 7bp 28897 chr10 104157744 104157744 1 + C T LGG 104157745 + 104157725 104157765 41 TCCCACTCCATAGAATCTCCGGGGGCATCAAACCTGAAGAT TCCCACTCCATAGAATCTCTGGGGGCATCAAACCTGAAGAT < 41bp 0.512404429497928 0.71917618762877 NA NA prediction 0.413543516261683 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104157745 chr10:104157744 nonsynonymous SNV 0.143 4 20 hm7G_associated_SNPs_31473 0 0 1 0 2 NFKB2 chr10:104157842 5'GT 104157842 Upstream 99bp 28898 chr1 111032110 111032110 1 + G A rs2271886 111032111 + 111032091 111032131 41 TCAGGCCATCCTGGACACCGGCACCTCCCTGCTGGTGGGGC TCAGGCCATCCTGGACACCAGCACCTCCCTGCTGGTGGGGC < 41bp 0.516885299191542 0.723653443349748 NA NA prediction 0.413536288316413 Functional Gain - CYMP;CYMP-AS1 ENSG00000235407;ENSG00000240194 ncRNA_exonic Human other chr1:111032111 chr1:111032110 . . 0 20 hm7G_associated_SNPs_31477 0 0 0 0 1 CYMP;CYMP-AS1 chr1:111032193 5'GT 111032193 Upstream 84bp 28899 chr10 101604107 101604107 1 + C T rs17216317 101604108 + 101604088 101604128 41 GTGACTGATAAGAGGCCTCCGCCAGATTGGCCCAGCAAAGG GTGACTGATAAGAGGCCTCTGCCAGATTGGCCCAGCAAAGG < 41bp 0.495971591245349 0.706767536524918 NA NA prediction 0.413535073049836 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101604108 chr10:101604107 nonsynonymous SNV 0.331 5 20 hm7G_associated_SNPs_31478 1 0 1 0 1 ABCC2 chr10:101604079 3'AG 101604079 Downstream 29bp 28900 chr22 41318414 41318414 1 + G T UCEC 41318415 + 41318395 41318435 41 TTGGCCCTCTGCTTCCCTGGGACAAGCTTGGAGAACATCTA TTGGCCCTCTGCTTCCCTGTGACAAGCTTGGAGAACATCTA < 41bp 0.366923503272592 0.706766968526749 NA NA prediction 0.413533937053499 Functional Gain - XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41318415 chr22:41318414 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31479 0 0 1 1 1 XPNPEP3 chr22:41318337 3'AG 41318337 Downstream 78bp 28901 chr14 105849743 105849743 1 + C T LUSC 105849744 + 105849724 105849764 41 CCCGTGAAGATCGCCGTGGCGGGAGCGCAGCATTACCTCAG CCCGTGAAGATCGCCGTGGTGGGAGCGCAGCATTACCTCAG < 41bp 0.495685150479204 0.706764138748535 NA NA prediction 0.41352827749707 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105849744 chr14:105849743 nonsynonymous SNV 0.738 3 20 hm7G_associated_SNPs_31480 0 0 1 0 1 PACS2 chr14:105849696 3'AG 105849696 Downstream 48bp 28902 chr11 68851473 68851473 1 + G A COAD 68851474 + 68851454 68851494 41 GAACATGCGTGCGTTTGGCGGGATCCTGGTGGTGAGTCCCA GAACATGCGTGCGTTTGGCAGGATCCTGGTGGTGAGTCCCA < 41bp 0.535994629806072 0.742758541130289 NA NA prediction 0.413527822648433 Functional Gain - TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68851474 chr11:68851473 nonsynonymous SNV 0.905 5 20 hm7G_associated_SNPs_31481 0 0 1 0 2 TPCN2 chr11:68851413 3'AG 68851413 Downstream 61bp 28903 chr11 68851473 68851473 1 + G A COAD 68851474 + 68851454 68851494 41 GAACATGCGTGCGTTTGGCGGGATCCTGGTGGTGAGTCCCA GAACATGCGTGCGTTTGGCAGGATCCTGGTGGTGAGTCCCA < 41bp 0.535994629806072 0.742758541130289 NA NA prediction 0.413527822648433 Functional Gain - TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68851474 chr11:68851473 nonsynonymous SNV 0.905 5 20 hm7G_associated_SNPs_31481 0 0 1 0 2 TPCN2 chr11:68851484 5'GT 68851484 Upstream 12bp 28904 chr3 121646661 121646661 1 + C T COAD 121646662 + 121646642 121646682 41 TGCCTGGCATTTGCAGTTGCGGCAGCTGTAGAGATAAAAAT TGCCTGGCATTTGCAGTTGTGGCAGCTGTAGAGATAAAAAT < 41bp 0.526175767762013 0.732936028085946 NA NA prediction 0.413520520647864 Functional Gain - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121646662 chr3:121646661 nonsynonymous SNV 0.738 1 20 hm7G_associated_SNPs_31482 0 0 1 0 2 SLC15A2 chr3:121646605 3'AG 121646605 Downstream 57bp 28905 chr3 121646661 121646661 1 + C T COAD 121646662 + 121646642 121646682 41 TGCCTGGCATTTGCAGTTGCGGCAGCTGTAGAGATAAAAAT TGCCTGGCATTTGCAGTTGTGGCAGCTGTAGAGATAAAAAT < 41bp 0.526175767762013 0.732936028085946 NA NA prediction 0.413520520647864 Functional Gain - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121646662 chr3:121646661 nonsynonymous SNV 0.738 1 20 hm7G_associated_SNPs_31482 0 0 1 0 2 SLC15A2 chr3:121646686 5'GT 121646686 Upstream 26bp 28906 chr6 24412566 24412566 1 + C T STAD 24412567 + 24412547 24412587 41 TGTCTGGAGAGGGTCAACTCGTTACATACCCTTTACCTTTT TGTCTGGAGAGGGTCAACTTGTTACATACCCTTTACCTTTT < 41bp 0.501308473467303 0.708067742833166 NA NA prediction 0.413518538731727 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24412567 chr6:24412566 synonymous SNV . 0 20 hm7G_associated_SNPs_31485 0 0 1 0 2 MRS2 chr6:24412514 3'AG 24412514 Downstream 53bp 28907 chr6 24412566 24412566 1 + C T STAD 24412567 + 24412547 24412587 41 TGTCTGGAGAGGGTCAACTCGTTACATACCCTTTACCTTTT TGTCTGGAGAGGGTCAACTTGTTACATACCCTTTACCTTTT < 41bp 0.501308473467303 0.708067742833166 NA NA prediction 0.413518538731727 Functional Gain - MRS2 ENSG00000124532 CDS Human protein_coding chr6:24412567 chr6:24412566 synonymous SNV . 0 20 hm7G_associated_SNPs_31485 0 0 1 0 2 MRS2 chr6:24412623 5'GT 24412623 Upstream 58bp 28908 chr15 42138980 42138980 1 + C T COAD 42138981 + 42138961 42139001 41 GCCCCTCCTGCAGCCCACTCGGGACGTGGACCTCATCCTGT GCCCCTCCTGCAGCCCACTTGGGACGTGGACCTCATCCTGT < 41bp 0.523655728892825 0.730412204486557 NA NA prediction 0.413512951187464 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42138981 chr15:42138980 nonsynonymous SNV 0.346 4 20 hm7G_associated_SNPs_31486 0 0 0 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42139033 5'GT 42139033 Upstream 54bp 28909 chr1 154293696 154293696 1 + G T LUAD 154293697 + 154293677 154293717 41 ATACGCAGCCTCCTGGCCCGGCAGTGCCTGGCAGAGTTTCT ATACGCAGCCTCCTGGCCCTGCAGTGCCTGGCAGAGTTTCT < 41bp 0.694962965723644 0.901710076955542 NA NA prediction 0.413494222463797 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154293697 chr1:154293696 nonsynonymous SNV 0.963 5 20 hm7G_associated_SNPs_31488 0 0 0 0 1 AQP10 chr1:154293736 5'GT 154293736 Upstream 41bp 28910 chr10 94824166 94824166 1 + G A rs11187265 94824167 + 94824147 94824187 41 GCAAGGGACCAGCTGCATCGGCACCTGGAGGGGGCCATTTC GCAAGGGACCAGCTGCATCAGCACCTGGAGGGGGCCATTTC < 41bp 0.566058735615853 0.772799370746217 NA NA prediction 0.413481270260728 Functional Gain - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94824167 chr10:94824166 nonsynonymous SNV 0.216 0 20 hm7G_associated_SNPs_31489 0 0 0 0 1 CYP26C1 chr10:94824138 3'AG 94824138 Downstream 29bp 28911 chr10 135020364 135020364 1 + C T UVM 135020365 + 135020345 135020385 41 CTGCTCCACCCACAGGTTCCGACGTCAAGACCATGCTGTCC CTGCTCCACCCACAGGTTCTGACGTCAAGACCATGCTGTCC < 41bp 0.513554319886386 0.720293685188835 NA NA prediction 0.413478730604899 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135020365 chr10:135020364 synonymous SNV . 0 20 hm7G_associated_SNPs_31491 0 0 0 0 1 KNDC1 chr10:135020360 3'AG 135020360 Downstream 5bp 28912 chr15 85438269 85438269 1 + C T ACC 85438270 + 85438250 85438290 41 CCTCACCTTCCTGGGCCACCGCCTGCTGAAACGGCTTCTGG CCTCACCTTCCTGGGCCACTGCCTGCTGAAACGGCTTCTGG < 41bp 0.493708877049827 0.706738988548602 NA NA prediction 0.413477977097203 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85438270 chr15:85438269 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_31492 0 0 0 0 2 SLC28A1 chr15:85438171 3'AG 85438171 Downstream 99bp 28913 chr15 85438269 85438269 1 + C T ACC 85438270 + 85438250 85438290 41 CCTCACCTTCCTGGGCCACCGCCTGCTGAAACGGCTTCTGG CCTCACCTTCCTGGGCCACTGCCTGCTGAAACGGCTTCTGG < 41bp 0.493708877049827 0.706738988548602 NA NA prediction 0.413477977097203 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85438270 chr15:85438269 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_31492 0 0 0 0 2 SLC28A1 chr15:85438354 5'GT 85438354 Upstream 86bp 28914 chr16 31424187 31424187 1 + G T UCEC 31424188 + 31424168 31424208 41 AGCTCCCAGCTCTCCCCCAGGCTGCAGTATTTTGGGCAGGC AGCTCCCAGCTCTCCCCCATGCTGCAGTATTTTGGGCAGGC < 41bp 0.35409791794702 0.706738047875501 NA NA prediction 0.413476095751002 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424188 chr16:31424187 nonsynonymous SNV 0.421 0 20 hm7G_associated_SNPs_31493 0 0 0 0 1 ITGAD chr16:31424159 3'AG 31424159 Downstream 29bp 28915 chr15 28632776 28632776 1 + G A rs529488406 28632777 + 28632757 28632797 41 GAGGACATCTGGACAGTGAGGGGGAGGAGGCACCTCGGCCC GAGGACATCTGGACAGTGAAGGGGAGGAGGCACCTCGGCCC < 41bp 0.529918191995254 0.736655778564804 NA NA prediction 0.413475173139101 Functional Gain - GOLGA8F;GOLGA8G ENSG00000153684 CDS Human protein_coding chr15:28632777 chr15:28632776 synonymous SNV . 0 20 hm7G_associated_SNPs_31494 0 0 0 0 1 GOLGA8F;GOLGA8G chr15:28632748 3'AG 28632748 Downstream 29bp 28916 chr15 40657402 40657402 1 + C T UCEC 40657403 + 40657383 40657423 41 GAGGCAGTGCCCAGGAGAGCGCTGTCCGGCCTCGGAGAATG GAGGCAGTGCCCAGGAGAGTGCTGTCCGGCCTCGGAGAATG < 41bp 0.507749146198901 0.714485257978307 NA NA prediction 0.413472223558812 Functional Gain - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40657403 chr15:40657402 synonymous SNV . 0 20 hm7G_associated_SNPs_31496 0 0 0 0 2 DISP2 chr15:40657348 3'AG 40657348 Downstream 55bp 28917 chr15 40657402 40657402 1 + C T UCEC 40657403 + 40657383 40657423 41 GAGGCAGTGCCCAGGAGAGCGCTGTCCGGCCTCGGAGAATG GAGGCAGTGCCCAGGAGAGTGCTGTCCGGCCTCGGAGAATG < 41bp 0.507749146198901 0.714485257978307 NA NA prediction 0.413472223558812 Functional Gain - DISP2 ENSG00000140323 CDS Human protein_coding chr15:40657403 chr15:40657402 synonymous SNV . 0 20 hm7G_associated_SNPs_31496 0 0 0 0 2 DISP2 chr15:40657475 5'GT 40657475 Upstream 74bp 28918 chr21 45708290 45708290 1 + G A HNSC 45708291 + 45708271 45708311 41 GTCCTCCGGGGACGTCCCGGGAGCCCGAGGGGCCGTGGAGG GTCCTCCGGGGACGTCCCGAGAGCCCGAGGGGCCGTGGAGG < 41bp 0.570349845451989 0.777084514275208 NA NA prediction 0.413469337646439 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45708291 chr21:45708290 nonsynonymous SNV 0.414 3 20 hm7G_associated_SNPs_31498 0 0 0 0 2 AIRE chr21:45708228 3'AG 45708228 Downstream 63bp 28919 chr21 45708290 45708290 1 + G A HNSC 45708291 + 45708271 45708311 41 GTCCTCCGGGGACGTCCCGGGAGCCCGAGGGGCCGTGGAGG GTCCTCCGGGGACGTCCCGAGAGCCCGAGGGGCCGTGGAGG < 41bp 0.570349845451989 0.777084514275208 NA NA prediction 0.413469337646439 Functional Gain - AIRE ENSG00000160224 CDS Human protein_coding chr21:45708291 chr21:45708290 nonsynonymous SNV 0.414 3 20 hm7G_associated_SNPs_31498 0 0 0 0 2 AIRE chr21:45708341 5'GT 45708341 Upstream 52bp 28920 chr2 136362420 136362420 1 + G T UCEC 136362421 + 136362401 136362441 41 AAATAACCTTTTCTAATGAGGATGTCTGATACTGTTACTGT AAATAACCTTTTCTAATGATGATGTCTGATACTGTTACTGT < 41bp 0.527774181057677 0.734506431582007 NA NA prediction 0.41346450104866 Functional Gain - R3HDM1 ENSG00000048991 CDS Human protein_coding chr2:136362421 chr2:136362420 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31501 0 0 1 0 1 R3HDM1 chr2:136362376 3'AG 136362376 Downstream 45bp 28921 chr6 142703103 142703103 1 + C T COAD 142703104 + 142703084 142703124 41 CAAGGTTCCTACCTGATCCCGCTCCCAGCAGCAGAACTGGC CAAGGTTCCTACCTGATCCTGCTCCCAGCAGCAGAACTGGC < 41bp 0.489259798749086 0.7067314986493 NA NA prediction 0.4134629972986 Functional Gain - ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142703104 chr6:142703103 nonsynonymous SNV 0.406 3 20 hm7G_associated_SNPs_31502 0 0 1 0 2 ADGRG6 chr6:142703088 3'AG 142703088 Downstream 16bp 28922 chr6 142703103 142703103 1 + C T COAD 142703104 + 142703084 142703124 41 CAAGGTTCCTACCTGATCCCGCTCCCAGCAGCAGAACTGGC CAAGGTTCCTACCTGATCCTGCTCCCAGCAGCAGAACTGGC < 41bp 0.489259798749086 0.7067314986493 NA NA prediction 0.4134629972986 Functional Gain - ADGRG6 ENSG00000112414 CDS Human protein_coding chr6:142703104 chr6:142703103 nonsynonymous SNV 0.406 3 20 hm7G_associated_SNPs_31502 0 0 1 0 2 ADGRG6 chr6:142703156 5'GT 142703156 Upstream 54bp 28923 chr19 45295660 45295660 1 + G A UCEC 45295661 + 45295641 45295681 41 AGCAGCTGCAGCTCTACTGGGCCATGGACTCCACATTTGAG AGCAGCTGCAGCTCTACTGAGCCATGGACTCCACATTTGAG < 41bp 0.484234761197806 0.706731266290822 NA NA prediction 0.413462532581645 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45295661 chr19:45295660 stopgain 0.986 0 20 hm7G_associated_SNPs_31503 0 0 0 0 1 CBLC chr19:45295640 3'AG 45295640 Downstream 21bp 28924 chr9 129455511 129455511 1 + G A PAAD 129455512 + 129455492 129455532 41 GATGACGGGAAGGACCCGCGGAGGCCCAAGCGACCCCGGAC GATGACGGGAAGGACCCGCAGAGGCCCAAGCGACCCCGGAC < 41bp 0.544071096317521 0.750800262875155 NA NA prediction 0.413458333115268 Functional Gain - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129455512 chr9:129455511 nonsynonymous SNV 0.529 3 20 hm7G_associated_SNPs_31506 0 0 0 0 2 LMX1B chr9:129455421 3'AG 129455421 Downstream 91bp 28925 chr9 129455511 129455511 1 + G A PAAD 129455512 + 129455492 129455532 41 GATGACGGGAAGGACCCGCGGAGGCCCAAGCGACCCCGGAC GATGACGGGAAGGACCCGCAGAGGCCCAAGCGACCCCGGAC < 41bp 0.544071096317521 0.750800262875155 NA NA prediction 0.413458333115268 Functional Gain - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129455512 chr9:129455511 nonsynonymous SNV 0.529 3 20 hm7G_associated_SNPs_31506 0 0 0 0 2 LMX1B chr9:129455602 5'GT 129455602 Upstream 92bp 28926 chr12 122405989 122405989 1 + C T UCEC 122405990 + 122405970 122406010 41 GCCACCCGAACGGGGTGGCCGGCATGGCCGTTTCCTATGAT GCCACCCGAACGGGGTGGCTGGCATGGCCGTTTCCTATGAT < 41bp 0.535863224436357 0.742590786961293 NA NA prediction 0.413455125049871 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122405990 chr12:122405989 synonymous SNV . 0 20 hm7G_associated_SNPs_31507 0 0 0 0 2 WDR66 chr12:122405912 3'AG 122405912 Downstream 78bp 28927 chr12 122405989 122405989 1 + C T UCEC 122405990 + 122405970 122406010 41 GCCACCCGAACGGGGTGGCCGGCATGGCCGTTTCCTATGAT GCCACCCGAACGGGGTGGCTGGCATGGCCGTTTCCTATGAT < 41bp 0.535863224436357 0.742590786961293 NA NA prediction 0.413455125049871 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122405990 chr12:122405989 synonymous SNV . 0 20 hm7G_associated_SNPs_31507 0 0 0 0 2 WDR66 chr12:122406075 5'GT 122406075 Upstream 87bp 28928 chrX 152807833 152807833 1 + C T UCEC 152807834 + 152807814 152807854 41 AGGCCAATGACCTCAAGATCGACGAGAGCTCCCTGACGGGC AGGCCAATGACCTCAAGATTGACGAGAGCTCCCTGACGGGC < 41bp 0.526146590189887 0.732873955962224 NA NA prediction 0.413454731544673 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152807834 chrX:152807833 synonymous SNV . 0 20 hm7G_associated_SNPs_31508 0 0 0 0 2 ATP2B3 chrX:152807781 3'AG 152807781 Downstream 53bp 28929 chrX 152807833 152807833 1 + C T UCEC 152807834 + 152807814 152807854 41 AGGCCAATGACCTCAAGATCGACGAGAGCTCCCTGACGGGC AGGCCAATGACCTCAAGATTGACGAGAGCTCCCTGACGGGC < 41bp 0.526146590189887 0.732873955962224 NA NA prediction 0.413454731544673 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152807834 chrX:152807833 synonymous SNV . 0 20 hm7G_associated_SNPs_31508 0 0 0 0 2 ATP2B3 chrX:152807906 5'GT 152807906 Upstream 74bp 28930 chr10 13237180 13237180 1 + C T COAD 13237181 + 13237161 13237201 41 AATGACGCCCAAGCTGGGGCGAGGTGTCTTGGAAGGAGATG AATGACGCCCAAGCTGGGGTGAGGTGTCTTGGAAGGAGATG < 41bp 0.526434554139251 0.733158319646724 NA NA prediction 0.413447531014945 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13237181 chr10:13237180 stopgain 0.988 1 20 hm7G_associated_SNPs_31509 0 0 1 0 1 MCM10 chr10:13237269 5'GT 13237269 Upstream 90bp 28931 chr18 56897656 56897656 1 + G T LUSC 56897657 + 56897637 56897677 41 TGGTAGACTCTCTGCTCCAGGTTCTCAACGTGAAGGAAGGA TGGTAGACTCTCTGCTCCATGTTCTCAACGTGAAGGAAGGA < 41bp 0.675493412757716 0.882216089639048 NA NA prediction 0.413445353762663 Functional Gain - GRP;GRP ENSG00000134443;ENSG00000134443 exonic;splicing Human protein_coding chr18:56897657 chr18:56897656 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_31510 0 0 0 0 1 GRP chr18:56897636 3'AG 56897636 Downstream 21bp 28932 chr1 40214583 40214583 1 + C T UCEC 40214584 + 40214564 40214604 41 CTCAATTCCAGAGAATTTCCGCTGCCTGTGCACTCATGAAA CTCAATTCCAGAGAATTTCTGCTGCCTGTGCACTCATGAAA < 41bp 0.50536527508019 0.712085010137916 NA NA prediction 0.413439470115452 Functional Gain - PPIE ENSG00000084072 CDS Human protein_coding chr1:40214584 chr1:40214583 nonsynonymous SNV 0.804 4 20 hm7G_associated_SNPs_31512 0 0 1 0 1 PPIE chr1:40214575 3'AG 40214575 Downstream 9bp 28933 chr20 58318215 58318215 1 + C T UCEC 58318216 + 58318196 58318236 41 ATATCTGGTCTCAGGGATTCGAACTCCCCCTGTGAGGAGGA ATATCTGGTCTCAGGGATTTGAACTCCCCCTGTGAGGAGGA < 41bp 0.495554682774591 0.706717771261628 NA NA prediction 0.413435542523256 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58318216 chr20:58318215 stopgain 1.000 1 20 hm7G_associated_SNPs_31513 0 0 0 0 1 PHACTR3 chr20:58318162 3'AG 58318162 Downstream 54bp 28934 chr22 41895746 41895746 1 + G A GBM 41895747 + 41895727 41895767 41 CAGAAAGCTCTGGGTGTGCGGCAGTACCATGTGGCCTCAGT CAGAAAGCTCTGGGTGTGCAGCAGTACCATGTGGCCTCAGT < 41bp 0.556609736492862 0.763319019834655 NA NA prediction 0.413418566683585 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41895747 chr22:41895746 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31515 0 0 1 0 1 ACO2 chr22:41895730 3'AG 41895730 Downstream 17bp 28935 chr3 148714621 148714621 1 + C T UCEC 148714622 + 148714602 148714642 41 GCTTCAATTCCGGAGTCTTCGTTTATCAGCCTTCAGTTGAA GCTTCAATTCCGGAGTCTTTGTTTATCAGCCTTCAGTTGAA < 41bp 0.50888459469442 0.71559073153167 NA NA prediction 0.413412273674499 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714622 chr3:148714621 synonymous SNV . 0 20 hm7G_associated_SNPs_31517 0 0 1 0 3 GYG1 chr3:148714529 3'AG 148714529 Downstream 93bp 28936 chr3 148714621 148714621 1 + C T UCEC 148714622 + 148714602 148714642 41 GCTTCAATTCCGGAGTCTTCGTTTATCAGCCTTCAGTTGAA GCTTCAATTCCGGAGTCTTTGTTTATCAGCCTTCAGTTGAA < 41bp 0.50888459469442 0.71559073153167 NA NA prediction 0.413412273674499 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714622 chr3:148714621 synonymous SNV . 0 20 hm7G_associated_SNPs_31517 0 0 1 0 3 GYG1 chr3:148714679 5'GT 148714679 Upstream 59bp 28937 chr3 148714621 148714621 1 + C T UCEC 148714622 + 148714602 148714642 41 GCTTCAATTCCGGAGTCTTCGTTTATCAGCCTTCAGTTGAA GCTTCAATTCCGGAGTCTTTGTTTATCAGCCTTCAGTTGAA < 41bp 0.50888459469442 0.71559073153167 NA NA prediction 0.413412273674499 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714622 chr3:148714621 synonymous SNV . 0 20 hm7G_associated_SNPs_31517 0 0 1 0 3 GYG1 chr3:148714691 5'GT 148714691 Upstream 71bp 28938 chr12 7069099 7069099 1 + C T COAD 7069100 + 7069080 7069120 41 CTTTCCCCAGCGCCGGCATCGGCCGCACAGGCACCATCATT CTTTCCCCAGCGCCGGCATTGGCCGCACAGGCACCATCATT < 41bp 0.532747414018419 0.739451530927501 NA NA prediction 0.413408233818164 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7069100 chr12:7069099 synonymous SNV . 0 20 hm7G_associated_SNPs_31518 0 0 0 0 1 PTPN6 chr12:7069090 3'AG 7069090 Downstream 10bp 28939 chr3 186370111 186370111 1 + G T UCEC 186370112 + 186370092 186370132 41 AACCTACAAACCTTCCCAAGGTGGAAGAATCCCAGCAGAAA AACCTACAAACCTTCCCAATGTGGAAGAATCCCAGCAGAAA < 41bp 0.399219796281455 0.70669742487743 NA NA prediction 0.41339484975486 Functional Gain - FETUB ENSG00000090512 CDS Human protein_coding chr3:186370112 chr3:186370111 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_31520 0 0 0 0 1 FETUB chr3:186370052 3'AG 186370052 Downstream 60bp 28940 chr10 102750651 102750651 1 + G T THCA 102750652 + 102750632 102750672 41 AGCTCAAGACTACATCATCGGGGTCTTTCGGAAGTTTGCAA AGCTCAAGACTACATCATCTGGGTCTTTCGGAAGTTTGCAA < 41bp 0.362392815357643 0.706696544548189 NA NA prediction 0.413393089096377 Functional Gain - TWNK ENSG00000107815 CDS Human protein_coding chr10:102750652 chr10:102750651 nonsynonymous SNV 0.832 2 20 hm7G_associated_SNPs_31522 0 0 1 0 1 TWNK chr10:102750626 3'AG 102750626 Downstream 26bp 28941 chr20 39802854 39802854 1 + C T COAD 39802855 + 39802835 39802875 41 GCTGTTTCATGGCCGAGCCCGGGAAGGCTCCTTTGAATCCC GCTGTTTCATGGCCGAGCCTGGGAAGGCTCCTTTGAATCCC < 41bp 0.527723427785551 0.734419629371124 NA NA prediction 0.413392403171147 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39802855 chr20:39802854 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_31523 0 0 0 0 3 PLCG1 chr20:39802764 3'AG 39802764 Downstream 91bp 28942 chr20 39802854 39802854 1 + C T COAD 39802855 + 39802835 39802875 41 GCTGTTTCATGGCCGAGCCCGGGAAGGCTCCTTTGAATCCC GCTGTTTCATGGCCGAGCCTGGGAAGGCTCCTTTGAATCCC < 41bp 0.527723427785551 0.734419629371124 NA NA prediction 0.413392403171147 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39802855 chr20:39802854 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_31523 0 0 0 0 3 PLCG1 chr20:39802767 3'AG 39802767 Downstream 88bp 28943 chr20 39802854 39802854 1 + C T COAD 39802855 + 39802835 39802875 41 GCTGTTTCATGGCCGAGCCCGGGAAGGCTCCTTTGAATCCC GCTGTTTCATGGCCGAGCCTGGGAAGGCTCCTTTGAATCCC < 41bp 0.527723427785551 0.734419629371124 NA NA prediction 0.413392403171147 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39802855 chr20:39802854 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_31523 0 0 0 0 3 PLCG1 chr20:39802951 5'GT 39802951 Upstream 98bp 28944 chr1 206653223 206653223 1 + C T COAD 206653224 + 206653204 206653244 41 TGTCTGCAGCTGCTCTGGACGTCCCCAAGTTCGTCCCCAAA TGTCTGCAGCTGCTCTGGATGTCCCCAAGTTCGTCCCCAAA < 41bp 0.501565056554214 0.708257815881315 NA NA prediction 0.413385518654201 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653224 chr1:206653223 synonymous SNV . 0 20 hm7G_associated_SNPs_31525 0 0 0 0 2 IKBKE chr1:206653213 3'AG 206653213 Downstream 11bp 28945 chr1 206653223 206653223 1 + C T COAD 206653224 + 206653204 206653244 41 TGTCTGCAGCTGCTCTGGACGTCCCCAAGTTCGTCCCCAAA TGTCTGCAGCTGCTCTGGATGTCCCCAAGTTCGTCCCCAAA < 41bp 0.501565056554214 0.708257815881315 NA NA prediction 0.413385518654201 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653224 chr1:206653223 synonymous SNV . 0 20 hm7G_associated_SNPs_31525 0 0 0 0 2 IKBKE chr1:206653277 5'GT 206653277 Upstream 55bp 28946 chr6 39851789 39851789 1 + C T SKCM 39851790 + 39851770 39851810 41 TGATGACATGCAGGTATTTCGGATCCTGGACCTAGAGGATT TGATGACATGCAGGTATTTTGGATCCTGGACCTAGAGGATT < 41bp 0.489324469483768 0.706690481733864 NA NA prediction 0.413380963467727 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39851790 chr6:39851789 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31526 0 0 0 0 2 DAAM2 chr6:39851738 3'AG 39851738 Downstream 52bp 28947 chr6 39851789 39851789 1 + C T SKCM 39851790 + 39851770 39851810 41 TGATGACATGCAGGTATTTCGGATCCTGGACCTAGAGGATT TGATGACATGCAGGTATTTTGGATCCTGGACCTAGAGGATT < 41bp 0.489324469483768 0.706690481733864 NA NA prediction 0.413380963467727 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39851790 chr6:39851789 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31526 0 0 0 0 2 DAAM2 chr6:39851845 5'GT 39851845 Upstream 57bp 28948 chr15 45951281 45951281 1 + G A BRCA 45951282 + 45951262 45951302 41 GGTGCTGGGTGGGGGCAGTGGCGGAATCACCATGGCTGCCC GGTGCTGGGTGGGGGCAGTAGCGGAATCACCATGGCTGCCC < 41bp 0.543844376919708 0.750534749033126 NA NA prediction 0.413380744226836 Functional Gain - SQOR ENSG00000137767;ENSG00000260170 CDS Human other chr15:45951282 chr15:45951281 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_31527 0 0 0 0 1 SQOR chr15:45951355 5'GT 45951355 Upstream 75bp 28949 chr1 246805283 246805283 1 + C T STAD 246805284 + 246805264 246805304 41 CAGGAAAGGAAATGCTCCACGCAGTTACTAGTGTCTGAAGA CAGGAAAGGAAATGCTCCATGCAGTTACTAGTGTCTGAAGA < 41bp 0.531721381491751 0.738410608514131 NA NA prediction 0.41337845404476 Functional Gain - CNST ENSG00000162852 CDS Human protein_coding chr1:246805284 chr1:246805283 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_31528 0 0 1 0 2 CNST chr1:246805243 3'AG 246805243 Downstream 41bp 28950 chr1 246805283 246805283 1 + C T STAD 246805284 + 246805264 246805304 41 CAGGAAAGGAAATGCTCCACGCAGTTACTAGTGTCTGAAGA CAGGAAAGGAAATGCTCCATGCAGTTACTAGTGTCTGAAGA < 41bp 0.531721381491751 0.738410608514131 NA NA prediction 0.41337845404476 Functional Gain - CNST ENSG00000162852 CDS Human protein_coding chr1:246805284 chr1:246805283 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_31528 0 0 1 0 2 CNST chr1:246805339 5'GT 246805339 Upstream 57bp 28951 chr20 30616835 30616835 1 + G A rs6089151 30616836 + 30616816 30616856 41 CTTTGAAGCATGTTACAGCGGCACGTCCACACCTTCTTTCC CTTTGAAGCATGTTACAGCAGCACGTCCACACCTTCTTTCC < 41bp 0.539361472001638 0.746050099637775 NA NA prediction 0.413377255272274 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30616836 chr20:30616835 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_31529 0 0 0 0 2 CCM2L chr20:30616798 3'AG 30616798 Downstream 38bp 28952 chr20 30616835 30616835 1 + G A rs6089151 30616836 + 30616816 30616856 41 CTTTGAAGCATGTTACAGCGGCACGTCCACACCTTCTTTCC CTTTGAAGCATGTTACAGCAGCACGTCCACACCTTCTTTCC < 41bp 0.539361472001638 0.746050099637775 NA NA prediction 0.413377255272274 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30616836 chr20:30616835 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_31529 0 0 0 0 2 CCM2L chr20:30616927 5'GT 30616927 Upstream 93bp 28953 chr12 53663771 53663771 1 + C T BLCA 53663772 + 53663752 53663792 41 CTTCCTTTCAGGCCTGGAACGAGGCACCAAGAGGCGCTATA CTTCCTTTCAGGCCTGGAATGAGGCACCAAGAGGCGCTATA < 41bp 0.494149055965624 0.706687796283657 NA NA prediction 0.413375592567314 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53663772 chr12:53663771 stopgain 0.992 0 20 hm7G_associated_SNPs_31530 0 0 1 0 1 ESPL1 chr12:53663869 5'GT 53663869 Upstream 99bp 28954 chr1 55136498 55136498 1 + C T STAD 55136499 + 55136479 55136519 41 CCAGCCCACCCTGGGCATGCGGGAGAGGTCGGAGCTGGTGA CCAGCCCACCCTGGGCATGTGGGAGAGGTCGGAGCTGGTGA < 41bp 0.501771743322568 0.708456792838233 NA NA prediction 0.41337009903133 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55136499 chr1:55136498 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_31534 0 0 0 0 1 MROH7 chr1:55136473 3'AG 55136473 Downstream 26bp 28955 chr17 38510570 38510570 1 + C T UCEC 38510571 + 38510551 38510591 41 CAGATCCTGCGGATCTGCACGCGGTACACGCCCGAGCAGGA CAGATCCTGCGGATCTGCATGCGGTACACGCCCGAGCAGGA < 41bp 0.513957034414719 0.720641587125805 NA NA prediction 0.413369105422171 Functional Gain - RARA ENSG00000131759 CDS Human protein_coding chr17:38510571 chr17:38510570 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_31535 0 0 1 0 1 RARA chr17:38510554 3'AG 38510554 Downstream 17bp 28956 chr6 160831780 160831780 1 + C T COAD 160831781 + 160831761 160831801 41 GGTGGTCCCTGAGTCTCCCCGTTGGCTGATTACTCGGAAGA GGTGGTCCCTGAGTCTCCCTGTTGGCTGATTACTCGGAAGA < 41bp 0.500383447383849 0.70706459763241 NA NA prediction 0.413362300497123 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160831781 chr6:160831780 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_31537 0 0 1 0 1 SLC22A3 chr6:160831878 5'GT 160831878 Upstream 99bp 28957 chr22 50960444 50960444 1 + C T UCEC 50960445 + 50960425 50960465 41 TGCCGACAGCAGGCGGCTTCGGCGAAAGGGTCCGTCCTTTG TGCCGACAGCAGGCGGCTTTGGCGAAAGGGTCCGTCCTTTG < 41bp 0.504832014359263 0.711513090310145 NA NA prediction 0.413362151901764 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960445 chr22:50960444 nonsynonymous SNV 0.137 3 20 hm7G_associated_SNPs_31538 0 0 1 0 2 NCAPH2 chr22:50960415 3'AG 50960415 Downstream 30bp 28958 chr22 50960444 50960444 1 + C T UCEC 50960445 + 50960425 50960465 41 TGCCGACAGCAGGCGGCTTCGGCGAAAGGGTCCGTCCTTTG TGCCGACAGCAGGCGGCTTTGGCGAAAGGGTCCGTCCTTTG < 41bp 0.504832014359263 0.711513090310145 NA NA prediction 0.413362151901764 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960445 chr22:50960444 nonsynonymous SNV 0.137 3 20 hm7G_associated_SNPs_31538 0 0 1 0 2 NCAPH2 chr22:50960468 5'GT 50960468 Upstream 25bp 28959 chr9 32420964 32420964 1 + C T UCEC 32420965 + 32420945 32420985 41 CTAACATGTGTCCAGAGTACGGAGCAACTGCTGCCTTTTTC CTAACATGTGTCCAGAGTATGGAGCAACTGCTGCCTTTTTC < 41bp 0.535294532464028 0.741973881311298 NA NA prediction 0.413358697694541 Functional Gain - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32420965 chr9:32420964 synonymous SNV . 0 20 hm7G_associated_SNPs_31539 0 0 0 2 1 ACO1 chr9:32421025 5'GT 32421025 Upstream 62bp 28960 chr17 8168365 8168365 1 + G T UCEC 8168366 + 8168346 8168386 41 AGCCAGTCAAGAGCCTGCTGGACCCAAAAGTCGCCGCCCGG AGCCAGTCAAGAGCCTGCTTGACCCAAAAGTCGCCGCCCGG < 41bp 0.348006075463305 0.706677630012082 NA NA prediction 0.413355260024163 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8168366 chr17:8168365 synonymous SNV . 0 20 hm7G_associated_SNPs_31541 0 0 0 0 1 PFAS chr17:8168443 5'GT 8168443 Upstream 79bp 28961 chr9 135864569 135864569 1 + C T UCEC 135864570 + 135864550 135864590 41 GTGAGCCTGGAGCAGCACACGCACGTCCACTCCCAGGTGGG GTGAGCCTGGAGCAGCACATGCACGTCCACTCCCAGGTGGG < 41bp 0.499728653222185 0.706676689097297 NA NA prediction 0.413353378194593 Functional Gain - GFI1B ENSG00000165702 CDS Human protein_coding chr9:135864570 chr9:135864569 nonsynonymous SNV 0.855 0 20 hm7G_associated_SNPs_31542 0 0 1 0 1 GFI1B chr9:135864585 5'GT 135864585 Upstream 17bp 28962 chr9 133907491 133907491 1 + C T BRCA 133907492 + 133907472 133907512 41 GGCTCAACACGTTTGGGGACGACATCTTCAAGGACCCCAAG GGCTCAACACGTTTGGGGATGACATCTTCAAGGACCCCAAG < 41bp 0.513832254792052 0.720505965396006 NA NA prediction 0.413347421207907 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133907492 chr9:133907491 synonymous SNV . 0 20 hm7G_associated_SNPs_31545 0 0 0 0 2 LAMC3 chr9:133907432 3'AG 133907432 Downstream 60bp 28963 chr9 133907491 133907491 1 + C T BRCA 133907492 + 133907472 133907512 41 GGCTCAACACGTTTGGGGACGACATCTTCAAGGACCCCAAG GGCTCAACACGTTTGGGGATGACATCTTCAAGGACCCCAAG < 41bp 0.513832254792052 0.720505965396006 NA NA prediction 0.413347421207907 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133907492 chr9:133907491 synonymous SNV . 0 20 hm7G_associated_SNPs_31545 0 0 0 0 2 LAMC3 chr9:133907562 5'GT 133907562 Upstream 72bp 28964 chr6 26370624 26370624 1 + G A OV 26370625 + 26370605 26370645 41 TCTGGAGTGCAGGTCCACCGGCTGGTACCCCCAACCCCAAA TCTGGAGTGCAGGTCCACCAGCTGGTACCCCCAACCCCAAA < 41bp 0.5484613935747 0.75513458565891 NA NA prediction 0.41334638416842 Functional Gain - BTN3A2 ENSG00000186470 CDS Human protein_coding chr6:26370625 chr6:26370624 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_31547 0 0 1 0 1 BTN3A2 chr6:26370550 3'AG 26370550 Downstream 75bp 28965 chrX 48371094 48371094 1 + C T CESC 48371095 + 48371075 48371115 41 CATCCCCCTCAACGGTGACCGCCTCCTTCGCAAGTGAGCAC CATCCCCCTCAACGGTGACTGCCTCCTTCGCAAGTGAGCAC < 41bp 0.530023897879859 0.736695928143599 NA NA prediction 0.41334406052748 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48371095 chrX:48371094 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_31548 0 0 0 0 1 PORCN chrX:48371107 5'GT 48371107 Upstream 14bp 28966 chr15 76452443 76452443 1 + C T OV 76452444 + 76452424 76452464 41 TGTCCATTGCAGTTTCCAGCGCATTCCAGTTTGCTGGCGTG TGTCCATTGCAGTTTCCAGTGCATTCCAGTTTGCTGGCGTG < 41bp 0.524678533146447 0.731348143437391 NA NA prediction 0.41333922058189 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76452444 chr15:76452443 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_31550 0 0 0 0 2 TMEM266 chr15:76452436 3'AG 76452436 Downstream 8bp 28967 chr15 76452443 76452443 1 + C T OV 76452444 + 76452424 76452464 41 TGTCCATTGCAGTTTCCAGCGCATTCCAGTTTGCTGGCGTG TGTCCATTGCAGTTTCCAGTGCATTCCAGTTTGCTGGCGTG < 41bp 0.524678533146447 0.731348143437391 NA NA prediction 0.41333922058189 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76452444 chr15:76452443 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_31550 0 0 0 0 2 TMEM266 chr15:76452509 5'GT 76452509 Upstream 67bp 28968 chr16 28602116 28602116 1 + C T THYM 28602117 + 28602097 28602137 41 ACACACCCTGAGCCGGCGCCGTGTCATCCCGCTGCCCCAGT ACACACCCTGAGCCGGCGCTGTGTCATCCCGCTGCCCCAGT < 41bp 0.497338908720005 0.706669187348757 NA NA prediction 0.413338374697515 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28602117 chr16:28602116 nonsynonymous SNV 0.000 4 20 hm7G_associated_SNPs_31551 0 0 1 0 1 SGF29 chr16:28602094 3'AG 28602094 Downstream 23bp 28969 chr1 210577865 210577865 1 + C T rs567439002 210577866 + 210577846 210577886 41 GCAGTTCACGCTGACCGTTCGCTGCCTGTACTACACCAGCT GCAGTTCACGCTGACCGTTTGCTGCCTGTACTACACCAGCT < 41bp 0.511129311450099 0.71779727086953 NA NA prediction 0.413335918838862 Functional Gain - HHAT ENSG00000054392 CDS Human protein_coding chr1:210577866 chr1:210577865 nonsynonymous SNV 0.880 1 20 hm7G_associated_SNPs_31552 0 0 0 0 1 HHAT chr1:210577808 3'AG 210577808 Downstream 58bp 28970 chr9 131193481 131193481 1 + G A rs143305223 131193482 + 131193462 131193502 41 CAGTGCCATCAGGAACCTCGGCGTAGACCTGCTCCCGGGCT CAGTGCCATCAGGAACCTCAGCGTAGACCTGCTCCCGGGCT < 41bp 0.563087710463039 0.769754406640599 NA NA prediction 0.41333339235512 Functional Gain - CERCAM ENSG00000167123 CDS Human protein_coding chr9:131193482 chr9:131193481 nonsynonymous SNV 0.355 3 20 hm7G_associated_SNPs_31553 0 0 1 0 1 CERCAM chr9:131193450 3'AG 131193450 Downstream 32bp 28971 chr1 2235335 2235335 1 + C T ACC 2235336 + 2235316 2235356 41 CCCAACGTGGCCCTCGCACCGCCGGCCCAGCAGAAGGTTGT CCCAACGTGGCCCTCGCACTGCCGGCCCAGCAGAAGGTTGT < 41bp 0.497384413977155 0.706664532079434 NA NA prediction 0.413329064158868 Functional Gain - SKI ENSG00000157933 CDS Human protein_coding chr1:2235336 chr1:2235335 nonsynonymous SNV 0.036 4 20 hm7G_associated_SNPs_31555 0 0 0 0 1 SKI chr1:2235279 3'AG 2235279 Downstream 57bp 28972 chr3 111766795 111766795 1 + C T UCEC 111766796 + 111766776 111766816 41 CGACTCCCTTTTGCCCATCCGGAGCAGCATCTTGTACAGGT CGACTCCCTTTTGCCCATCTGGAGCAGCATCTTGTACAGGT < 41bp 0.530397954731771 0.73705719575503 NA NA prediction 0.413318482046517 Functional Gain - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111766796 chr3:111766795 nonsynonymous SNV 0.604 4 20 hm7G_associated_SNPs_31559 0 0 0 0 1 TMPRSS7 chr3:111766814 5'GT 111766814 Upstream 20bp 28973 chr11 70009403 70009403 1 + C T ESCA 70009404 + 70009384 70009424 41 TTCAGGTTTGTTGGACGCCCGGGCGACTACGTGTACATTTT TTCAGGTTTGTTGGACGCCTGGGCGACTACGTGTACATTTT < 41bp 0.500349260447397 0.707008478952789 NA NA prediction 0.413318437010783 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70009404 chr11:70009403 nonsynonymous SNV 0.024 4 20 hm7G_associated_SNPs_31560 0 0 0 0 2 ANO1 chr11:70009389 3'AG 70009389 Downstream 15bp 28974 chr11 70009403 70009403 1 + C T ESCA 70009404 + 70009384 70009424 41 TTCAGGTTTGTTGGACGCCCGGGCGACTACGTGTACATTTT TTCAGGTTTGTTGGACGCCTGGGCGACTACGTGTACATTTT < 41bp 0.500349260447397 0.707008478952789 NA NA prediction 0.413318437010783 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70009404 chr11:70009403 nonsynonymous SNV 0.024 4 20 hm7G_associated_SNPs_31560 0 0 0 0 2 ANO1 chr11:70009446 5'GT 70009446 Upstream 44bp 28975 chr3 50222097 50222097 1 + C T STAD 50222098 + 50222078 50222118 41 TGAGGTGATCAACTTCATGCGCAGCCACCCACTCATGTACC TGAGGTGATCAACTTCATGTGCAGCCACCCACTCATGTACC < 41bp 0.488425356431655 0.706654027581194 NA NA prediction 0.413308055162387 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50222098 chr3:50222097 nonsynonymous SNV 0.932 4 20 hm7G_associated_SNPs_31562 0 0 0 0 1 SEMA3F chr3:50222025 3'AG 50222025 Downstream 73bp 28976 chr11 7439309 7439309 1 + C T KICH 7439310 + 7439290 7439330 41 TAGTCTTTGATGTCCCTCCCGAGAACATTGACCAAATCCAC TAGTCTTTGATGTCCCTCCTGAGAACATTGACCAAATCCAC < 41bp 0.496802605007791 0.70665340547999 NA NA prediction 0.41330681095998 Functional Gain - SYT9 ENSG00000170743 CDS Human protein_coding chr11:7439310 chr11:7439309 synonymous SNV . 0 20 hm7G_associated_SNPs_31563 0 0 0 0 1 SYT9 chr11:7439359 5'GT 7439359 Upstream 51bp 28977 chr2 75094807 75094807 1 + C T SARC 75094808 + 75094788 75094828 41 TCTTGGAGGGACCAACTTCCGTGTGCTTTGGGTGAAAGTAA TCTTGGAGGGACCAACTTCTGTGTGCTTTGGGTGAAAGTAA < 41bp 0.517683431756001 0.724335331188322 NA NA prediction 0.413303798864642 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75094808 chr2:75094807 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_31564 0 0 1 0 1 HK2 chr2:75094763 3'AG 75094763 Downstream 45bp 28978 chr5 1217005 1217005 1 + C T LGG 1217006 + 1216986 1217026 41 TGCAACGCCTCCGACCCCGCGGCCTACGCGCAGCTGGTGTT TGCAACGCCTCCGACCCCGTGGCCTACGCGCAGCTGGTGTT < 41bp 0.500285042364405 0.706934191340487 NA NA prediction 0.413298297952165 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1217006 chr5:1217005 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_31565 0 0 0 0 1 SLC6A19 chr5:1217060 5'GT 1217060 Upstream 56bp 28979 chr5 129015555 129015555 1 + C T KIRC 129015556 + 129015536 129015576 41 TACCGTTCATTATGTAAGACGAGGCCTCTGGGAGAAGATCT TACCGTTCATTATGTAAGATGAGGCCTCTGGGAGAAGATCT < 41bp 0.520469156364751 0.72711777146702 NA NA prediction 0.413297230204538 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:129015556 chr5:129015555 stopgain 1.000 1 20 hm7G_associated_SNPs_31566 0 0 0 0 2 ADAMTS19 chr5:129015457 3'AG 129015457 Downstream 99bp 28980 chr5 129015555 129015555 1 + C T KIRC 129015556 + 129015536 129015576 41 TACCGTTCATTATGTAAGACGAGGCCTCTGGGAGAAGATCT TACCGTTCATTATGTAAGATGAGGCCTCTGGGAGAAGATCT < 41bp 0.520469156364751 0.72711777146702 NA NA prediction 0.413297230204538 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:129015556 chr5:129015555 stopgain 1.000 1 20 hm7G_associated_SNPs_31566 0 0 0 0 2 ADAMTS19 chr5:129015614 5'GT 129015614 Upstream 60bp 28981 chr5 148680716 148680716 1 + C T OV 148680717 + 148680697 148680737 41 CTGTGACCTGAGTGACCTTCGGGACATGCCAGAGGATGATG CTGTGACCTGAGTGACCTTTGGGACATGCCAGAGGATGATG < 41bp 0.542226277751176 0.7488738885788 NA NA prediction 0.413295221655249 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148680717 chr5:148680716 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_31567 0 0 0 0 2 AFAP1L1 chr5:148680696 3'AG 148680696 Downstream 21bp 28982 chr5 148680716 148680716 1 + C T OV 148680717 + 148680697 148680737 41 CTGTGACCTGAGTGACCTTCGGGACATGCCAGAGGATGATG CTGTGACCTGAGTGACCTTTGGGACATGCCAGAGGATGATG < 41bp 0.542226277751176 0.7488738885788 NA NA prediction 0.413295221655249 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148680717 chr5:148680716 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_31567 0 0 0 0 2 AFAP1L1 chr5:148680793 5'GT 148680793 Upstream 78bp 28983 chr11 76919558 76919558 1 + G T UCEC 76919559 + 76919539 76919579 41 AGAAAGCTCGGCCCATCAAGGACGGTAATGAGGCCGGGTCC AGAAAGCTCGGCCCATCAATGACGGTAATGAGGCCGGGTCC < 41bp 0.374970499002566 0.706646960955327 NA NA prediction 0.413293921910654 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76919559 chr11:76919558 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_31568 0 0 0 0 2 MYO7A chr11:76919475 3'AG 76919475 Downstream 84bp 28984 chr11 76919558 76919558 1 + G T UCEC 76919559 + 76919539 76919579 41 AGAAAGCTCGGCCCATCAAGGACGGTAATGAGGCCGGGTCC AGAAAGCTCGGCCCATCAATGACGGTAATGAGGCCGGGTCC < 41bp 0.374970499002566 0.706646960955327 NA NA prediction 0.413293921910654 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76919559 chr11:76919558 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_31568 0 0 0 0 2 MYO7A chr11:76919562 5'GT 76919562 Upstream 5bp 28985 chr15 45556875 45556875 1 + C T SKCM 45556876 + 45556856 45556896 41 TCCTGGAGGACAGTGTTTTCGGGCCTAGGTCTTCAATTTGT TCCTGGAGGACAGTGTTTTTGGGCCTAGGTCTTCAATTTGT < 41bp 0.50434766600144 0.710992635414223 NA NA prediction 0.413289938825565 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45556876 chr15:45556875 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_31570 0 0 0 0 2 SLC28A2 chr15:45556853 3'AG 45556853 Downstream 23bp 28986 chr15 45556875 45556875 1 + C T SKCM 45556876 + 45556856 45556896 41 TCCTGGAGGACAGTGTTTTCGGGCCTAGGTCTTCAATTTGT TCCTGGAGGACAGTGTTTTTGGGCCTAGGTCTTCAATTTGT < 41bp 0.50434766600144 0.710992635414223 NA NA prediction 0.413289938825565 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45556876 chr15:45556875 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_31570 0 0 0 0 2 SLC28A2 chr15:45556966 5'GT 45556966 Upstream 92bp 28987 chr20 10279979 10279979 1 + C T UCEC 10279980 + 10279960 10280000 41 AGCAGGTGAGCGGCATCATCGGGAACCTCCGTCACATGGCC AGCAGGTGAGCGGCATCATTGGGAACCTCCGTCACATGGCC < 41bp 0.513384033447254 0.720027469677705 NA NA prediction 0.413286872460903 Functional Gain - SNAP25 ENSG00000132639 CDS Human protein_coding chr20:10279980 chr20:10279979 synonymous SNV . 0 20 hm7G_associated_SNPs_31572 0 0 0 0 1 SNAP25 chr20:10280060 5'GT 10280060 Upstream 82bp 28988 chr19 50784856 50784856 1 + C T SKCM 50784857 + 50784837 50784877 41 TCTCCTCCCCTCAGCTTTCCGAGTGGCGGCGGCGCCAGGAG TCTCCTCCCCTCAGCTTTCTGAGTGGCGGCGGCGCCAGGAG < 41bp 0.499295001388573 0.70664218202391 NA NA prediction 0.41328436404782 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50784857 chr19:50784856 synonymous SNV . 0 20 hm7G_associated_SNPs_31573 1 0 0 0 1 MYH14 chr19:50784851 3'AG 50784851 Downstream 6bp 28989 chr3 9962198 9962198 1 + C T LUAD 9962199 + 9962179 9962219 41 CTGTGGTATATGACTGCTTCGAGGCTGCCCTAGGGAGTGAG CTGTGGTATATGACTGCTTTGAGGCTGCCCTAGGGAGTGAG < 41bp 0.526105169277472 0.732744016454778 NA NA prediction 0.413277694354613 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9962199 chr3:9962198 synonymous SNV . 0 20 hm7G_associated_SNPs_31574 0 0 1 0 2 IL17RC chr3:9962175 3'AG 9962175 Downstream 24bp 28990 chr3 9962198 9962198 1 + C T LUAD 9962199 + 9962179 9962219 41 CTGTGGTATATGACTGCTTCGAGGCTGCCCTAGGGAGTGAG CTGTGGTATATGACTGCTTTGAGGCTGCCCTAGGGAGTGAG < 41bp 0.526105169277472 0.732744016454778 NA NA prediction 0.413277694354613 Functional Gain - IL17RC ENSG00000163702 CDS Human protein_coding chr3:9962199 chr3:9962198 synonymous SNV . 0 20 hm7G_associated_SNPs_31574 0 0 1 0 2 IL17RC chr3:9962286 5'GT 9962286 Upstream 89bp 28991 chr9 113510032 113510032 1 + G A LAML 113510033 + 113510013 113510053 41 CATAGCTACCAATAAGCATGGGGAGAAGTTCAGTACTGCCA CATAGCTACCAATAAGCATAGGGAGAAGTTCAGTACTGCCA < 41bp 0.516044404632188 0.722683102936868 NA NA prediction 0.413277396609361 Functional Gain - MUSK ENSG00000030304 CDS Human protein_coding chr9:113510033 chr9:113510032 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_31575 0 0 0 0 1 MUSK chr9:113510079 5'GT 113510079 Upstream 48bp 28992 chr9 131114992 131114992 1 + G A rs183345361 131114993 + 131114973 131115013 41 AAGAAGTTCTCAGCCTCCCGGTTCTGGGACGATTGTATCAA AAGAAGTTCTCAGCCTCCCAGTTCTGGGACGATTGTATCAA < 41bp 0.530967779390047 0.737603492385402 NA NA prediction 0.413271425990709 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131114993 chr9:131114992 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_31577 0 0 1 0 2 SLC27A4 chr9:131114917 3'AG 131114917 Downstream 76bp 28993 chr9 131114992 131114992 1 + G A rs183345361 131114993 + 131114973 131115013 41 AAGAAGTTCTCAGCCTCCCGGTTCTGGGACGATTGTATCAA AAGAAGTTCTCAGCCTCCCAGTTCTGGGACGATTGTATCAA < 41bp 0.530967779390047 0.737603492385402 NA NA prediction 0.413271425990709 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131114993 chr9:131114992 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_31577 0 0 1 0 2 SLC27A4 chr9:131115026 5'GT 131115026 Upstream 35bp 28994 chr11 67186995 67186995 1 + G A rs41302427 67186996 + 67186976 67187016 41 GGCTGGCGCTGGCGGGGGCGGCAGGCATGGCGTCTGCACCC GGCTGGCGCTGGCGGGGGCAGCAGGCATGGCGTCTGCACCC < 41bp 0.580719775173054 0.78735267815316 NA NA prediction 0.413265805960213 Functional Gain - CARNS1 ENSG00000172508;ENSG00000172531 CDS Human other chr11:67186996 chr11:67186995 nonsynonymous SNV 0.974 0 20 hm7G_associated_SNPs_31578 0 0 0 0 1 CARNS1 chr11:67186958 3'AG 67186958 Downstream 38bp 28995 chr11 74913973 74913973 1 + G A STAD 74913974 + 74913954 74913994 41 AGAAAGAAGACAAGACTTTGGCTGTGGGCATCCAGTTCATG AGAAAGAAGACAAGACTTTAGCTGTGGGCATCCAGTTCATG < 41bp 0.505952797356782 0.712582938901457 NA NA prediction 0.41326028308935 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74913974 chr11:74913973 synonymous SNV . 0 20 hm7G_associated_SNPs_31579 0 0 1 0 2 SLCO2B1 chr11:74913946 3'AG 74913946 Downstream 28bp 28996 chr11 74913973 74913973 1 + G A STAD 74913974 + 74913954 74913994 41 AGAAAGAAGACAAGACTTTGGCTGTGGGCATCCAGTTCATG AGAAAGAAGACAAGACTTTAGCTGTGGGCATCCAGTTCATG < 41bp 0.505952797356782 0.712582938901457 NA NA prediction 0.41326028308935 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74913974 chr11:74913973 synonymous SNV . 0 20 hm7G_associated_SNPs_31579 0 0 1 0 2 SLCO2B1 chr11:74914010 5'GT 74914010 Upstream 38bp 28997 chr20 17437036 17437036 1 + G T HNSC 17437037 + 17437017 17437057 41 TGCACTCTGAGGCATTCTGGGACATCTGCAGCTGCCCCCGA TGCACTCTGAGGCATTCTGTGACATCTGCAGCTGCCCCCGA < 41bp 0.35641873781008 0.706628538546692 NA NA prediction 0.413257077093383 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17437037 chr20:17437036 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31580 0 0 0 0 2 PCSK2 chr20:17436993 3'AG 17436993 Downstream 44bp 28998 chr20 17437036 17437036 1 + G T HNSC 17437037 + 17437017 17437057 41 TGCACTCTGAGGCATTCTGGGACATCTGCAGCTGCCCCCGA TGCACTCTGAGGCATTCTGTGACATCTGCAGCTGCCCCCGA < 41bp 0.35641873781008 0.706628538546692 NA NA prediction 0.413257077093383 Functional Gain - PCSK2 ENSG00000125851 CDS Human protein_coding chr20:17437037 chr20:17437036 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31580 0 0 0 0 2 PCSK2 chr20:17437093 5'GT 17437093 Upstream 58bp 28999 chr10 121663645 121663645 1 + C T LGG 121663646 + 121663626 121663666 41 GCACGGATGGAGGGCGCTACGATGTTTACCTCTATGACCGA GCACGGATGGAGGGCGCTATGATGTTTACCTCTATGACCGA < 41bp 0.531839652785937 0.738467975066924 NA NA prediction 0.413256644561974 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121663646 chr10:121663645 synonymous SNV . 0 20 hm7G_associated_SNPs_31581 0 0 1 0 1 SEC23IP chr10:121663596 3'AG 121663596 Downstream 50bp 29000 chr16 56906653 56906653 1 + G A LGG 56906654 + 56906634 56906674 41 TCTCCATCTTCTTCCCCTCGGCCACAGGCATCCTGGCAGGG TCTCCATCTTCTTCCCCTCAGCCACAGGCATCCTGGCAGGG < 41bp 0.554969856002048 0.761597087695676 NA NA prediction 0.413254463387256 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56906654 chr16:56906653 synonymous SNV . 0 20 hm7G_associated_SNPs_31583 0 0 0 0 2 SLC12A3 chr16:56906568 3'AG 56906568 Downstream 86bp 29001 chr16 56906653 56906653 1 + G A LGG 56906654 + 56906634 56906674 41 TCTCCATCTTCTTCCCCTCGGCCACAGGCATCCTGGCAGGG TCTCCATCTTCTTCCCCTCAGCCACAGGCATCCTGGCAGGG < 41bp 0.554969856002048 0.761597087695676 NA NA prediction 0.413254463387256 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56906654 chr16:56906653 synonymous SNV . 0 20 hm7G_associated_SNPs_31583 0 0 0 0 2 SLC12A3 chr16:56906698 5'GT 56906698 Upstream 46bp 29002 chr19 4306215 4306215 1 + G A UCEC 4306216 + 4306196 4306236 41 CGAACTCGGCGAAGGTGCAGGAGGACCTCGAAGCAGAGTTC CGAACTCGGCGAAGGTGCAAGAGGACCTCGAAGCAGAGTTC < 41bp 0.519992015434238 0.726618942207296 NA NA prediction 0.413253853546117 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4306216 chr19:4306215 synonymous SNV . 0 20 hm7G_associated_SNPs_31584 0 0 0 0 1 FSD1 chr19:4306195 3'AG 4306195 Downstream 21bp 29003 chr9 34646775 34646775 1 + G A STAD 34646776 + 34646756 34646796 41 GCCGCAGCAGCAACCTTCCGGGCAAACGGTAACTGCACCGC GCCGCAGCAGCAACCTTCCAGGCAAACGGTAACTGCACCGC < 41bp 0.476294497877269 0.706625681490526 NA NA prediction 0.413251362981053 Functional Gain - GALT ENSG00000213930;ENSG00000258728 CDS Human other chr9:34646776 chr9:34646775 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_31586 0 0 1 0 2 GALT chr9:34646783 5'GT 34646783 Upstream 9bp 29004 chr9 34646775 34646775 1 + G A STAD 34646776 + 34646756 34646796 41 GCCGCAGCAGCAACCTTCCGGGCAAACGGTAACTGCACCGC GCCGCAGCAGCAACCTTCCAGGCAAACGGTAACTGCACCGC < 41bp 0.476294497877269 0.706625681490526 NA NA prediction 0.413251362981053 Functional Gain - GALT ENSG00000213930;ENSG00000258728 CDS Human other chr9:34646776 chr9:34646775 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_31586 0 0 1 0 2 GALT chr9:34646864 5'GT 34646864 Upstream 90bp 29005 chr21 45826530 45826530 1 + C T rs117901291 45826531 + 45826511 45826551 41 CTGTGTGGGTGGTGTCCTTCGGGGTGGCCAAGCAGGCCATC CTGTGTGGGTGGTGTCCTTTGGGGTGGCCAAGCAGGCCATC < 41bp 0.511899221996717 0.718521635522954 NA NA prediction 0.413244827052475 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45826531 chr21:45826530 synonymous SNV . 0 20 hm7G_associated_SNPs_31587 0 0 0 0 1 TRPM2 chr21:45826477 3'AG 45826477 Downstream 54bp 29006 chr22 21346572 21346572 1 + C T UCEC 21346573 + 21346553 21346593 41 CACCCTGACCTATGAGGAGCGGGTTGGCTTCAAGAAGTCCC CACCCTGACCTATGAGGAGTGGGTTGGCTTCAAGAAGTCCC < 41bp 0.495939170115766 0.706620344708172 NA NA prediction 0.413240689416343 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21346573 chr22:21346572 nonsynonymous SNV 0.151 3 20 hm7G_associated_SNPs_31588 0 0 1 0 2 LZTR1 chr22:21346503 3'AG 21346503 Downstream 70bp 29007 chr22 21346572 21346572 1 + C T UCEC 21346573 + 21346553 21346593 41 CACCCTGACCTATGAGGAGCGGGTTGGCTTCAAGAAGTCCC CACCCTGACCTATGAGGAGTGGGTTGGCTTCAAGAAGTCCC < 41bp 0.495939170115766 0.706620344708172 NA NA prediction 0.413240689416343 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21346573 chr22:21346572 nonsynonymous SNV 0.151 3 20 hm7G_associated_SNPs_31588 0 0 1 0 2 LZTR1 chr22:21346658 5'GT 21346658 Upstream 87bp 29008 chr1 160389361 160389361 1 + C T COAD 160389362 + 160389342 160389382 41 TCAAGGTCGTGCGCTCCACCGACGGCGCCAGCCGCTTCTAC TCAAGGTCGTGCGCTCCACTGACGGCGCCAGCCGCTTCTAC < 41bp 0.510709699959249 0.717329579650778 NA NA prediction 0.413239759383058 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160389362 chr1:160389361 synonymous SNV . 0 20 hm7G_associated_SNPs_31589 0 0 0 0 1 VANGL2 chr1:160389399 5'GT 160389399 Upstream 39bp 29009 chr9 133927934 133927934 1 + C T rs199764333 133927935 + 133927915 133927955 41 GCCCCTCATACTGACCTTCCGGGTGCCCCCCGGGGACTCCC GCCCCTCATACTGACCTTCTGGGTGCCCCCCGGGGACTCCC < 41bp 0.489945030783681 0.706619537851854 NA NA prediction 0.413239075703708 Functional Gain - LAMC3 ENSG00000050555 CDS Human protein_coding chr9:133927935 chr9:133927934 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_31591 0 0 0 0 1 LAMC3 chr9:133927878 3'AG 133927878 Downstream 57bp 29010 chr5 126770405 126770405 1 + C T UCEC 126770406 + 126770386 126770426 41 CCCTGGTTTTTATGGGCATCGCTGCAGCCAGACATGCCCAC CCCTGGTTTTTATGGGCATTGCTGCAGCCAGACATGCCCAC < 41bp 0.541248659687164 0.747866088192645 NA NA prediction 0.413234857010962 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126770406 chr5:126770405 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31594 0 0 0 0 1 MEGF10 chr5:126770379 3'AG 126770379 Downstream 27bp 29011 chr2 201515700 201515700 1 + C T READ 201515701 + 201515681 201515721 41 TCCTTTTCTTTCATAGGTGCGAATCATAAACATGTACAAGG TCCTTTTCTTTCATAGGTGTGAATCATAAACATGTACAAGG < 41bp 0.513587170401044 0.720203541261973 NA NA prediction 0.413232741721858 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201515701 chr2:201515700 stopgain 0.526 1 20 hm7G_associated_SNPs_31596 0 0 0 0 1 AOX1 chr2:201515697 3'AG 201515697 Downstream 4bp 29012 chr15 67713779 67713779 1 - C T SKCM 67713778 - 67713758 67713798 41 GGGATCCACTGAGGTCTGAGGCACGGTGGTACCAGAGGAGA GGGATCCACTGAGGTCTGAAGCACGGTGGTACCAGAGGAGA < 41bp 0.533074147082061 0.739689241562501 NA NA prediction 0.41323018896088 Functional Gain - IQCH ENSG00000103599 CDS Human protein_coding chr15:67713778 chr15:67713779 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_31597 0 0 0 0 1 IQCH chr15:67713836 3'AG 67713836 Downstream 58bp 29013 chr10 72298066 72298066 1 + C T HNSC 72298067 + 72298047 72298087 41 CTTTGCCCTCAGTTTCAGCCGCTGGCTGTGTGCCCACCCTG CTTTGCCCTCAGTTTCAGCTGCTGGCTGTGTGCCCACCCTG < 41bp 0.542303556795273 0.748914504327396 NA NA prediction 0.413221895064247 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72298067 chr10:72298066 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31601 0 0 0 0 2 PALD1 chr10:72298036 3'AG 72298036 Downstream 31bp 29014 chr10 72298066 72298066 1 + C T HNSC 72298067 + 72298047 72298087 41 CTTTGCCCTCAGTTTCAGCCGCTGGCTGTGTGCCCACCCTG CTTTGCCCTCAGTTTCAGCTGCTGGCTGTGTGCCCACCCTG < 41bp 0.542303556795273 0.748914504327396 NA NA prediction 0.413221895064247 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72298067 chr10:72298066 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31601 0 0 0 0 2 PALD1 chr10:72298164 5'GT 72298164 Upstream 99bp 29015 chr17 73567832 73567832 1 + G A rs148419840 73567833 + 73567813 73567853 41 CGTGTGCCTCCCGCCGAGCGGAGAATGGATGAGCCTGTGCG CGTGTGCCTCCCGCCGAGCAGAGAATGGATGAGCCTGTGCG < 41bp 0.501242083733415 0.707852772155357 NA NA prediction 0.413221376843884 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73567833 chr17:73567832 nonsynonymous SNV 0.887 2 20 hm7G_associated_SNPs_31602 0 0 1 0 1 LLGL2 chr17:73567748 3'AG 73567748 Downstream 85bp 29016 chr19 6926611 6926611 1 + C T STAD 6926612 + 6926592 6926632 41 GGGCTATGGAATGCATAATCGGTGAGTGACATCCTCTCTCT GGGCTATGGAATGCATAATTGGTGAGTGACATCCTCTCTCT < 41bp 0.504470764474336 0.711079820745811 NA NA prediction 0.413218112542951 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6926612 chr19:6926611 nonsynonymous SNV 0.769 3 20 hm7G_associated_SNPs_31604 0 0 0 0 1 ADGRE1 chr19:6926612 5'GT 6926612 Upstream 2bp 29017 chr19 3532474 3532474 1 + G A COAD 3532475 + 3532455 3532495 41 AGTACACGGAGCACCTGGCGGCCGTGAAGGCCATCGCCTGG AGTACACGGAGCACCTGGCAGCCGTGAAGGCCATCGCCTGG < 41bp 0.550206872513325 0.756815727400913 NA NA prediction 0.413217709775175 Functional Gain - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3532475 chr19:3532474 synonymous SNV . 0 20 hm7G_associated_SNPs_31605 0 0 1 0 1 FZR1 chr19:3532415 3'AG 3532415 Downstream 60bp 29018 chr10 31750115 31750115 1 + G T ACC 31750116 + 31750096 31750136 41 AGACCAGACAGTGTTACCAGGGAGGAGCAGTGAAAGAGAAG AGACCAGACAGTGTTACCATGGAGGAGCAGTGAAAGAGAAG < 41bp 0.622757792313448 0.829364701556806 NA NA prediction 0.413213818486718 Functional Gain - ZEB1 ENSG00000148516 CDS Human protein_coding chr10:31750116 chr10:31750115 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_31606 0 0 1 0 1 ZEB1 chr10:31750166 5'GT 31750166 Upstream 52bp 29019 chr12 6425473 6425473 1 + G A rs148443848 6425474 + 6425454 6425494 41 AGCCTGATTCGAACCCACCGGAGCTTTTGGGATGAGGTGCT AGCCTGATTCGAACCCACCAGAGCTTTTGGGATGAGGTGCT < 41bp 0.500783262348932 0.707389540061552 NA NA prediction 0.413212555425241 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6425474 chr12:6425473 nonsynonymous SNV 0.944 0 20 hm7G_associated_SNPs_31607 0 0 1 0 2 PLEKHG6 chr12:6425421 3'AG 6425421 Downstream 53bp 29020 chr12 6425473 6425473 1 + G A rs148443848 6425474 + 6425454 6425494 41 AGCCTGATTCGAACCCACCGGAGCTTTTGGGATGAGGTGCT AGCCTGATTCGAACCCACCAGAGCTTTTGGGATGAGGTGCT < 41bp 0.500783262348932 0.707389540061552 NA NA prediction 0.413212555425241 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6425474 chr12:6425473 nonsynonymous SNV 0.944 0 20 hm7G_associated_SNPs_31607 0 0 1 0 2 PLEKHG6 chr12:6425570 5'GT 6425570 Upstream 98bp 29021 chr7 148964272 148964272 1 + G A SKCM 148964273 + 148964253 148964293 41 CGGTGGGGCCAGGAGAAGGGGAATGAAGTAGAGGTGGGACG CGGTGGGGCCAGGAGAAGGAGAATGAAGTAGAGGTGGGACG < 41bp 0.494757286300651 0.706601746493001 NA NA prediction 0.413203492986002 Functional Gain - ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148964273 chr7:148964272 nonsynonymous SNV 0.193 0 20 hm7G_associated_SNPs_31611 0 0 1 0 2 ZNF783 chr7:148964188 3'AG 148964188 Downstream 85bp 29022 chr7 148964272 148964272 1 + G A SKCM 148964273 + 148964253 148964293 41 CGGTGGGGCCAGGAGAAGGGGAATGAAGTAGAGGTGGGACG CGGTGGGGCCAGGAGAAGGAGAATGAAGTAGAGGTGGGACG < 41bp 0.494757286300651 0.706601746493001 NA NA prediction 0.413203492986002 Functional Gain - ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148964273 chr7:148964272 nonsynonymous SNV 0.193 0 20 hm7G_associated_SNPs_31611 0 0 1 0 2 ZNF783 chr7:148964313 5'GT 148964313 Upstream 42bp 29023 chr12 1754999 1754999 1 + G A UCEC 1755000 + 1754980 1755020 41 CGTAGCCTGCAAATGCCACGGCGTCTCGGGGTCCTGCAGCC CGTAGCCTGCAAATGCCACAGCGTCTCGGGGTCCTGCAGCC < 41bp 0.553334203749344 0.759935121451337 NA NA prediction 0.413201835403987 Functional Gain - WNT5B ENSG00000111186 CDS Human protein_coding chr12:1755000 chr12:1754999 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_31612 0 0 0 0 1 WNT5B chr12:1754960 3'AG 1754960 Downstream 40bp 29024 chr1 178855202 178855202 1 + C T STAD 178855203 + 178855183 178855223 41 AGCGTCATGGAGCCCCATGCGCCATCTCGAGGCCAAGCTGA AGCGTCATGGAGCCCCATGTGCCATCTCGAGGCCAAGCTGA < 41bp 0.511215723884384 0.717816400812648 NA NA prediction 0.413201353856527 Functional Gain - RALGPS2 ENSG00000116191 CDS Human protein_coding chr1:178855203 chr1:178855202 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_31613 0 0 1 0 2 RALGPS2 chr1:178855104 3'AG 178855104 Downstream 99bp 29025 chr1 178855202 178855202 1 + C T STAD 178855203 + 178855183 178855223 41 AGCGTCATGGAGCCCCATGCGCCATCTCGAGGCCAAGCTGA AGCGTCATGGAGCCCCATGTGCCATCTCGAGGCCAAGCTGA < 41bp 0.511215723884384 0.717816400812648 NA NA prediction 0.413201353856527 Functional Gain - RALGPS2 ENSG00000116191 CDS Human protein_coding chr1:178855203 chr1:178855202 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_31613 0 0 1 0 2 RALGPS2 chr1:178855255 5'GT 178855255 Upstream 54bp 29026 chr11 64108940 64108940 1 + C T BLCA 64108941 + 64108921 64108961 41 ACATCCAGGGCCTCAGTCTCGAGGTCCAGAGCGAGCTGGCC ACATCCAGGGCCTCAGTCTTGAGGTCCAGAGCGAGCTGGCC < 41bp 0.513547510627693 0.720148168212507 NA NA prediction 0.413201315169628 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64108941 chr11:64108940 synonymous SNV . 0 20 hm7G_associated_SNPs_31614 0 0 1 0 1 CCDC88B chr11:64108976 5'GT 64108976 Upstream 37bp 29027 chr2 85529726 85529726 1 + C T UCEC 85529727 + 85529707 85529747 41 CCCACCTCTCCCCAGAGATCGATCCAAAGACAGGTAAGTCG CCCACCTCTCCCCAGAGATTGATCCAAAGACAGGTAAGTCG < 41bp 0.506031349535505 0.712629852905354 NA NA prediction 0.413197006739698 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85529727 chr2:85529726 synonymous SNV . 0 20 hm7G_associated_SNPs_31615 0 0 0 0 1 TCF7L1 chr2:85529739 5'GT 85529739 Upstream 14bp 29028 chr19 44495759 44495759 1 + G A LUAD 44495760 + 44495740 44495780 41 AGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTG AGGAGGAGCTGGGGCTGCTAGACCCTGCCCAGAGGAAGCTG < 41bp 0.54465562089509 0.751252783944534 NA NA prediction 0.413194326098888 Functional Gain - ZNF155 ENSG00000204920 CDS Human protein_coding chr19:44495760 chr19:44495759 synonymous SNV . 0 20 hm7G_associated_SNPs_31616 0 0 0 0 2 ZNF155 chr19:44495700 3'AG 44495700 Downstream 60bp 29029 chr19 44495759 44495759 1 + G A LUAD 44495760 + 44495740 44495780 41 AGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTG AGGAGGAGCTGGGGCTGCTAGACCCTGCCCAGAGGAAGCTG < 41bp 0.54465562089509 0.751252783944534 NA NA prediction 0.413194326098888 Functional Gain - ZNF155 ENSG00000204920 CDS Human protein_coding chr19:44495760 chr19:44495759 synonymous SNV . 0 20 hm7G_associated_SNPs_31616 0 0 0 0 2 ZNF155 chr19:44495826 5'GT 44495826 Upstream 68bp 29030 chr17 7918681 7918681 1 + G A LUSC 7918682 + 7918662 7918702 41 ACGCCTATATGGTGGCCTCGGGGCTGCCCCAGCGGAATGGG ACGCCTATATGGTGGCCTCAGGGCTGCCCCAGCGGAATGGG < 41bp 0.564692823315497 0.771289603487325 NA NA prediction 0.413193560343656 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7918682 chr17:7918681 synonymous SNV . 0 20 hm7G_associated_SNPs_31617 0 0 0 0 1 GUCY2D chr17:7918646 3'AG 7918646 Downstream 36bp 29031 chr2 24975010 24975010 1 + C T UCEC 24975011 + 24974991 24975031 41 AAGGCCTGGCAGCAAGGAGCGATAGGAAACAACAAGTAAGG AAGGCCTGGCAGCAAGGAGTGATAGGAAACAACAAGTAAGG < 41bp 0.514158087996829 0.72074944137403 NA NA prediction 0.413182706754403 Functional Gain - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24975011 chr2:24975010 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_31618 0 0 0 0 1 NCOA1 chr2:24975025 5'GT 24975025 Upstream 16bp 29032 chr16 29845106 29845106 1 + C T UCEC 29845107 + 29845087 29845127 41 ACTGCCCTCCATCTAAAGGCGCTGCTTGATTTTGAGGATAA ACTGCCCTCCATCTAAAGGTGCTGCTTGATTTTGAGGATAA < 41bp 0.538175628529574 0.744766639669425 NA NA prediction 0.413182022279701 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29845107 chr16:29845106 nonsynonymous SNV 0.852 3 20 hm7G_associated_SNPs_31619 0 0 0 1 2 MVP chr16:29845054 3'AG 29845054 Downstream 53bp 29033 chr16 29845106 29845106 1 + C T UCEC 29845107 + 29845087 29845127 41 ACTGCCCTCCATCTAAAGGCGCTGCTTGATTTTGAGGATAA ACTGCCCTCCATCTAAAGGTGCTGCTTGATTTTGAGGATAA < 41bp 0.538175628529574 0.744766639669425 NA NA prediction 0.413182022279701 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29845107 chr16:29845106 nonsynonymous SNV 0.852 3 20 hm7G_associated_SNPs_31619 0 0 0 1 2 MVP chr16:29845177 5'GT 29845177 Upstream 72bp 29034 chr20 18608840 18608840 1 + C T SKCM 18608841 + 18608821 18608861 41 GTGACCATAGAGCTGGAATCGCCAGCTCCCGGCACTGCTAC GTGACCATAGAGCTGGAATTGCCAGCTCCCGGCACTGCTAC < 41bp 0.525573501904615 0.732164276809999 NA NA prediction 0.413181549810767 Functional Gain - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18608841 chr20:18608840 nonsynonymous SNV 0.882 4 20 hm7G_associated_SNPs_31620 0 0 1 0 2 DTD1 chr20:18608771 3'AG 18608771 Downstream 70bp 29035 chr20 18608840 18608840 1 + C T SKCM 18608841 + 18608821 18608861 41 GTGACCATAGAGCTGGAATCGCCAGCTCCCGGCACTGCTAC GTGACCATAGAGCTGGAATTGCCAGCTCCCGGCACTGCTAC < 41bp 0.525573501904615 0.732164276809999 NA NA prediction 0.413181549810767 Functional Gain - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18608841 chr20:18608840 nonsynonymous SNV 0.882 4 20 hm7G_associated_SNPs_31620 0 0 1 0 2 DTD1 chr20:18608877 5'GT 18608877 Upstream 38bp 29036 chr7 99219079 99219079 1 + G T rs146750525 99219080 + 99219060 99219100 41 GCATCCAGCTGGGGCCAGTGGAGGTCAAGCCTGAATGGGGG GCATCCAGCTGGGGCCAGTTGAGGTCAAGCCTGAATGGGGG < 41bp 0.479867658446729 0.70659033684406 NA NA prediction 0.413180673688119 Functional Gain - ZSCAN25 ENSG00000197037 CDS Human protein_coding chr7:99219080 chr7:99219079 stopgain . 0 20 hm7G_associated_SNPs_31621 0 0 1 0 1 ZSCAN25 chr7:99218996 3'AG 99218996 Downstream 84bp 29037 chr2 74326497 74326497 1 + C T UCEC 74326498 + 74326478 74326518 41 CTGTACAAGATGGCCAACACGGATGAGTTTGGTAGCGAGGA CTGTACAAGATGGCCAACATGGATGAGTTTGGTAGCGAGGA < 41bp 0.521631624184951 0.728219335365694 NA NA prediction 0.413175422361486 Functional Gain - TET3 ENSG00000187605 CDS Human protein_coding chr2:74326498 chr2:74326497 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_31623 0 0 1 0 1 TET3 chr2:74326403 3'AG 74326403 Downstream 95bp 29038 chr14 61917577 61917577 1 + C T rs145465969 61917578 + 61917558 61917598 41 AGATTGCAGAACAGAGGTTCGGGATCAACATCCCACACAAG AGATTGCAGAACAGAGGTTTGGGATCAACATCCCACACAAG < 41bp 0.518266350834078 0.724853040841107 NA NA prediction 0.413173380014059 Functional Gain - PRKCH ENSG00000027075 CDS Human protein_coding chr14:61917578 chr14:61917577 synonymous SNV . 0 20 hm7G_associated_SNPs_31624 0 0 0 0 1 PRKCH chr14:61917560 3'AG 61917560 Downstream 18bp 29039 chr10 74619000 74619000 1 + C T UCEC 74619001 + 74618981 74619021 41 GCTACCATCCCGGCGTGAACGCTGTCAGTTCACACTCAAGC GCTACCATCCCGGCGTGAATGCTGTCAGTTCACACTCAAGC < 41bp 0.522446939942535 0.729033320802372 NA NA prediction 0.413172761719675 Functional Gain - MCU ENSG00000156026 CDS Human protein_coding chr10:74619001 chr10:74619000 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31625 0 0 0 0 1 MCU chr10:74618935 3'AG 74618935 Downstream 66bp 29040 chr7 121678889 121678889 1 + G T LUAD 121678890 + 121678870 121678910 41 ATTTCTGGAGAATGATATGGGAACATAATGTGGAAGTTATT ATTTCTGGAGAATGATATGTGAACATAATGTGGAAGTTATT < 41bp 0.377159189061202 0.70658167963116 NA NA prediction 0.41316335926232 Functional Gain - PTPRZ1 ENSG00000106278 CDS Human protein_coding chr7:121678890 chr7:121678889 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_31628 0 0 0 0 1 PTPRZ1 chr7:121678809 3'AG 121678809 Downstream 81bp 29041 chr11 120918333 120918333 1 + C T OV 120918334 + 120918314 120918354 41 GCTTTCTGCGCTCATGTGTCGGAACTAGATCTTTCTGACAA GCTTTCTGCGCTCATGTGTTGGAACTAGATCTTTCTGACAA < 41bp 0.496616620978361 0.706580914962597 NA NA prediction 0.413161829925193 Functional Gain - TBCEL ENSG00000154114 CDS Human protein_coding chr11:120918334 chr11:120918333 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_31629 0 0 1 0 2 TBCEL chr11:120918237 3'AG 120918237 Downstream 97bp 29042 chr11 120918333 120918333 1 + C T OV 120918334 + 120918314 120918354 41 GCTTTCTGCGCTCATGTGTCGGAACTAGATCTTTCTGACAA GCTTTCTGCGCTCATGTGTTGGAACTAGATCTTTCTGACAA < 41bp 0.496616620978361 0.706580914962597 NA NA prediction 0.413161829925193 Functional Gain - TBCEL ENSG00000154114 CDS Human protein_coding chr11:120918334 chr11:120918333 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_31629 0 0 1 0 2 TBCEL chr11:120918376 5'GT 120918376 Upstream 44bp 29043 chr1 46495831 46495831 1 + C T UCEC 46495832 + 46495812 46495852 41 CGATACCACCACATGGACTCGGAGGATGAGGAAGAAGTGAG CGATACCACCACATGGACTTGGAGGATGAGGAAGAAGTGAG < 41bp 0.550008634710524 0.756589506513523 NA NA prediction 0.413161743605998 Functional Gain - MAST2 ENSG00000086015 CDS Human protein_coding chr1:46495832 chr1:46495831 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_31630 0 0 1 0 2 MAST2 chr1:46495801 3'AG 46495801 Downstream 31bp 29044 chr1 46495831 46495831 1 + C T UCEC 46495832 + 46495812 46495852 41 CGATACCACCACATGGACTCGGAGGATGAGGAAGAAGTGAG CGATACCACCACATGGACTTGGAGGATGAGGAAGAAGTGAG < 41bp 0.550008634710524 0.756589506513523 NA NA prediction 0.413161743605998 Functional Gain - MAST2 ENSG00000086015 CDS Human protein_coding chr1:46495832 chr1:46495831 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_31630 0 0 1 0 2 MAST2 chr1:46495910 5'GT 46495910 Upstream 80bp 29045 chr1 11579454 11579454 1 + C T UCEC 11579455 + 11579435 11579475 41 AGACCTCCCTGCACTTCCCCGGAGACGTGTTTGCCGCTCCC AGACCTCCCTGCACTTCCCTGGAGACGTGTTTGCCGCTCCC < 41bp 0.528359275077763 0.734934523221134 NA NA prediction 0.413150496286741 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579455 chr1:11579454 synonymous SNV . 0 20 hm7G_associated_SNPs_31634 0 0 0 0 1 DISP3 chr1:11579412 3'AG 11579412 Downstream 43bp 29046 chr7 99917221 99917221 1 + G A SKCM 99917222 + 99917202 99917242 41 ACATGGAGGAGGACGACGAGGCCCCCAAACAAAAGATCTTC ACATGGAGGAGGACGACGAAGCCCCCAAACAAAAGATCTTC < 41bp 0.528947583872401 0.735522254020158 NA NA prediction 0.413149340295513 Functional Gain - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99917222 chr7:99917221 synonymous SNV . 0 20 hm7G_associated_SNPs_31635 0 0 0 0 1 SPDYE3 chr7:99917188 3'AG 99917188 Downstream 34bp 29047 chr11 71943719 71943719 1 + C T HNSC 71943720 + 71943700 71943740 41 GCTGCTCTCGCTGGGCGACCGGCAGCTCAATGCCTTTGACA GCTGCTCTCGCTGGGCGACTGGCAGCTCAATGCCTTTGACA < 41bp 0.530378914861773 0.736952526056953 NA NA prediction 0.413147222390361 Functional Gain - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71943720 chr11:71943719 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_31637 0 0 0 0 2 INPPL1 chr11:71943670 3'AG 71943670 Downstream 50bp 29048 chr11 71943719 71943719 1 + C T HNSC 71943720 + 71943700 71943740 41 GCTGCTCTCGCTGGGCGACCGGCAGCTCAATGCCTTTGACA GCTGCTCTCGCTGGGCGACTGGCAGCTCAATGCCTTTGACA < 41bp 0.530378914861773 0.736952526056953 NA NA prediction 0.413147222390361 Functional Gain - INPPL1 ENSG00000165458 CDS Human protein_coding chr11:71943720 chr11:71943719 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_31637 0 0 0 0 2 INPPL1 chr11:71943808 5'GT 71943808 Upstream 90bp 29049 chr12 6946232 6946232 1 + G A rs76248966 6946233 + 6946213 6946253 41 AACGCTTCGAGGGGCTCACGGTGCTTAAGGCTGCGCAGGTG AACGCTTCGAGGGGCTCACAGTGCTTAAGGCTGCGCAGGTG < 41bp 0.535237756723835 0.741808818685038 NA NA prediction 0.413142123922407 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946233 chr12:6946232 synonymous SNV . 0 20 hm7G_associated_SNPs_31639 0 0 1 0 2 P3H3 chr12:6946149 3'AG 6946149 Downstream 84bp 29050 chr12 6946232 6946232 1 + G A rs76248966 6946233 + 6946213 6946253 41 AACGCTTCGAGGGGCTCACGGTGCTTAAGGCTGCGCAGGTG AACGCTTCGAGGGGCTCACAGTGCTTAAGGCTGCGCAGGTG < 41bp 0.535237756723835 0.741808818685038 NA NA prediction 0.413142123922407 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946233 chr12:6946232 synonymous SNV . 0 20 hm7G_associated_SNPs_31639 0 0 1 0 2 P3H3 chr12:6946250 5'GT 6946250 Upstream 19bp 29051 chr19 4323057 4323057 1 + G A GBM 4323058 + 4323038 4323078 41 CAGCAAGGCGTTCGGCGTGGGCGTGGCCTACCGCAGCCTGG CAGCAAGGCGTTCGGCGTGAGCGTGGCCTACCGCAGCCTGG < 41bp 0.561735002523542 0.768300667129515 NA NA prediction 0.413131329211948 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323058 chr19:4323057 nonsynonymous SNV 0.883 5 20 hm7G_associated_SNPs_31644 0 0 0 0 1 FSD1 chr19:4322983 3'AG 4322983 Downstream 75bp 29052 chr20 3017903 3017903 1 + C T GBM 3017904 + 3017884 3017924 41 CCAGACTGTCAAGAGCCTGCGGCTACAGAGGCCACACATGG CCAGACTGTCAAGAGCCTGTGGCTACAGAGGCCACACATGG < 41bp 0.531285894734401 0.737850983535479 NA NA prediction 0.413130177602156 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3017904 chr20:3017903 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_31645 0 0 1 0 1 PTPRA chr20:3017935 5'GT 3017935 Upstream 33bp 29053 chr8 57358505 57358505 1 - C T STAD 57358504 - 57358484 57358524 41 TCCTCGCAGTCCATGGCGCGGTTCCTGACACTTTGCACTTG TCCTCGCAGTCCATGGCGCAGTTCCTGACACTTTGCACTTG < 41bp 0.54477181069978 0.75133439767872 NA NA prediction 0.413125173957881 Functional Gain - PENK ENSG00000181195 CDS Human antisense chr8:57358504 chr8:57358505 nonsynonymous SNV 0.941 0 20 hm7G_associated_SNPs_31646 0 0 0 0 1 LOC101929415 chr8:57358515 3'AG 57358515 Downstream 11bp 29054 chr11 64031499 64031499 1 + C T UCEC 64031500 + 64031480 64031520 41 TGCCTCCCCCCAGACTATGCGGAGGCCCTGATCAACCCCAT TGCCTCCCCCCAGACTATGTGGAGGCCCTGATCAACCCCAT < 41bp 0.517758987858485 0.724320924139366 NA NA prediction 0.413123872561763 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64031500 chr11:64031499 nonsynonymous SNV 0.364 3 20 hm7G_associated_SNPs_31647 0 0 1 0 2 PLCB3 chr11:64031493 3'AG 64031493 Downstream 7bp 29055 chr11 64031499 64031499 1 + C T UCEC 64031500 + 64031480 64031520 41 TGCCTCCCCCCAGACTATGCGGAGGCCCTGATCAACCCCAT TGCCTCCCCCCAGACTATGTGGAGGCCCTGATCAACCCCAT < 41bp 0.517758987858485 0.724320924139366 NA NA prediction 0.413123872561763 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64031500 chr11:64031499 nonsynonymous SNV 0.364 3 20 hm7G_associated_SNPs_31647 0 0 1 0 2 PLCB3 chr11:64031584 5'GT 64031584 Upstream 86bp 29056 chr2 241813426 241813426 1 + G A SKCM 241813427 + 241813407 241813447 41 TGTACTCGGGCTCCCAGAAGGCCCTGAACGCCCCTCCAGGG TGTACTCGGGCTCCCAGAAAGCCCTGAACGCCCCTCCAGGG < 41bp 0.558082849329362 0.764643209995172 NA NA prediction 0.413120721331619 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241813427 chr2:241813426 synonymous SNV . 0 20 hm7G_associated_SNPs_31648 0 0 0 0 2 AGXT chr2:241813395 3'AG 241813395 Downstream 32bp 29057 chr2 241813426 241813426 1 + G A SKCM 241813427 + 241813407 241813447 41 TGTACTCGGGCTCCCAGAAGGCCCTGAACGCCCCTCCAGGG TGTACTCGGGCTCCCAGAAAGCCCTGAACGCCCCTCCAGGG < 41bp 0.558082849329362 0.764643209995172 NA NA prediction 0.413120721331619 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241813427 chr2:241813426 synonymous SNV . 0 20 hm7G_associated_SNPs_31648 0 0 0 0 2 AGXT chr2:241813479 5'GT 241813479 Upstream 54bp 29058 chr17 74922706 74922706 1 + C T rs33966966 74922707 + 74922687 74922727 41 TCAGGGTCATCGACACCTTCGGGACGGAACCTGCGTACAAC TCAGGGTCATCGACACCTTTGGGACGGAACCTGCGTACAAC < 41bp 0.52827062432864 0.734830616162097 NA NA prediction 0.413119983666913 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74922707 chr17:74922706 synonymous SNV . 0 20 hm7G_associated_SNPs_31650 0 0 0 0 1 MGAT5B chr17:74922679 3'AG 74922679 Downstream 28bp 29059 chr1 226027600 226027600 1 + G A GBM 226027601 + 226027581 226027621 41 TACCCTGACCCTCCTCCTGGGACAGCGTTTCGGGAGGTTTC TACCCTGACCCTCCTCCTGAGACAGCGTTTCGGGAGGTTTC < 41bp 0.506770538035142 0.713328144680725 NA NA prediction 0.413115213291166 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226027601 chr1:226027600 nonsynonymous SNV 0.128 4 20 hm7G_associated_SNPs_31652 0 0 1 0 1 EPHX1 chr1:226027530 3'AG 226027530 Downstream 71bp 29060 chr12 54903687 54903687 1 + G T LUSC 54903688 + 54903668 54903708 41 TTTGTCCGAAGAAACCAGGGGGCTGAGCAGTGGCGCAGTGC TTTGTCCGAAGAAACCAGGTGGCTGAGCAGTGGCGCAGTGC < 41bp 0.68832360075163 0.89487891147661 NA NA prediction 0.413110621449961 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54903688 chr12:54903687 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_31653 0 0 1 0 2 NCKAP1L chr12:54903632 3'AG 54903632 Downstream 56bp 29061 chr12 54903687 54903687 1 + G T LUSC 54903688 + 54903668 54903708 41 TTTGTCCGAAGAAACCAGGGGGCTGAGCAGTGGCGCAGTGC TTTGTCCGAAGAAACCAGGTGGCTGAGCAGTGGCGCAGTGC < 41bp 0.68832360075163 0.89487891147661 NA NA prediction 0.413110621449961 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54903688 chr12:54903687 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_31653 0 0 1 0 2 NCKAP1L chr12:54903769 5'GT 54903769 Upstream 83bp 29062 chr3 180669208 180669208 1 + C T rs73176330 180669209 + 180669189 180669229 41 GGAAGGTTCCTGGAGTTACCGCCATTGAGCTAGATGAAGAT GGAAGGTTCCTGGAGTTACTGCCATTGAGCTAGATGAAGAT < 41bp 0.515437309158325 0.721991086224253 NA NA prediction 0.413107554131857 Functional Gain - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180669209 chr3:180669208 synonymous SNV . 0 20 hm7G_associated_SNPs_31657 0 0 1 0 1 FXR1 chr3:180669256 5'GT 180669256 Upstream 49bp 29063 chr6 39046125 39046125 1 + G A LUAD 39046126 + 39046106 39046146 41 CTGCTGTTTGTTGTCCCCTGGGGCATTGTCAAGTACCTCTA CTGCTGTTTGTTGTCCCCTAGGGCATTGTCAAGTACCTCTA < 41bp 0.523009057070258 0.729562792224699 NA NA prediction 0.413107470308882 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39046126 chr6:39046125 stopgain 1.000 1 20 hm7G_associated_SNPs_31658 0 0 0 0 2 GLP1R chr6:39046098 3'AG 39046098 Downstream 28bp 29064 chr6 39046125 39046125 1 + G A LUAD 39046126 + 39046106 39046146 41 CTGCTGTTTGTTGTCCCCTGGGGCATTGTCAAGTACCTCTA CTGCTGTTTGTTGTCCCCTAGGGCATTGTCAAGTACCTCTA < 41bp 0.523009057070258 0.729562792224699 NA NA prediction 0.413107470308882 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39046126 chr6:39046125 stopgain 1.000 1 20 hm7G_associated_SNPs_31658 0 0 0 0 2 GLP1R chr6:39046158 5'GT 39046158 Upstream 34bp 29065 chr6 26408147 26408147 1 + G A CESC 26408148 + 26408128 26408168 41 CATCAGAAGTTCCCTCCTCGGCCTGGAAAAGACAGCCAGCA CATCAGAAGTTCCCTCCTCAGCCTGGAAAAGACAGCCAGCA < 41bp 0.51692620227466 0.723478356959544 NA NA prediction 0.413104309369766 Functional Gain - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26408148 chr6:26408147 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_31659 0 0 1 0 2 BTN3A1 chr6:26408055 3'AG 26408055 Downstream 93bp 29066 chr6 26408147 26408147 1 + G A CESC 26408148 + 26408128 26408168 41 CATCAGAAGTTCCCTCCTCGGCCTGGAAAAGACAGCCAGCA CATCAGAAGTTCCCTCCTCAGCCTGGAAAAGACAGCCAGCA < 41bp 0.51692620227466 0.723478356959544 NA NA prediction 0.413104309369766 Functional Gain - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26408148 chr6:26408147 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_31659 0 0 1 0 2 BTN3A1 chr6:26408180 5'GT 26408180 Upstream 34bp 29067 chr13 24200921 24200921 1 + C T UCEC 24200922 + 24200902 24200942 41 GAGACCCTCCTCCTCCTTACGAACCGCACTGTGAGTGAACG GAGACCCTCCTCCTCCTTATGAACCGCACTGTGAGTGAACG < 41bp 0.538492524990409 0.745044478307195 NA NA prediction 0.413103906633572 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24200922 chr13:24200921 synonymous SNV . 0 20 hm7G_associated_SNPs_31661 0 0 1 0 2 TNFRSF19 chr13:24200846 3'AG 24200846 Downstream 76bp 29068 chr13 24200921 24200921 1 + C T UCEC 24200922 + 24200902 24200942 41 GAGACCCTCCTCCTCCTTACGAACCGCACTGTGAGTGAACG GAGACCCTCCTCCTCCTTATGAACCGCACTGTGAGTGAACG < 41bp 0.538492524990409 0.745044478307195 NA NA prediction 0.413103906633572 Functional Gain - TNFRSF19 ENSG00000127863 CDS Human protein_coding chr13:24200922 chr13:24200921 synonymous SNV . 0 20 hm7G_associated_SNPs_31661 0 0 1 0 2 TNFRSF19 chr13:24200931 5'GT 24200931 Upstream 11bp 29069 chr4 17590505 17590505 1 + C T rs12507986 17590506 + 17590486 17590526 41 GTGTGGCCAAAGGATCTGACGAGCCCCCAGTCTTCTTGGAA GTGTGGCCAAAGGATCTGATGAGCCCCCAGTCTTCTTGGAA < 41bp 0.48665640002967 0.706549772279449 NA NA prediction 0.413099544558899 Functional Gain - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17590506 chr4:17590505 synonymous SNV . 0 20 hm7G_associated_SNPs_31663 0 0 0 0 2 LAP3 chr4:17590442 3'AG 17590442 Downstream 64bp 29070 chr4 17590505 17590505 1 + C T rs12507986 17590506 + 17590486 17590526 41 GTGTGGCCAAAGGATCTGACGAGCCCCCAGTCTTCTTGGAA GTGTGGCCAAAGGATCTGATGAGCCCCCAGTCTTCTTGGAA < 41bp 0.48665640002967 0.706549772279449 NA NA prediction 0.413099544558899 Functional Gain - LAP3 ENSG00000002549 CDS Human protein_coding chr4:17590506 chr4:17590505 synonymous SNV . 0 20 hm7G_associated_SNPs_31663 0 0 0 0 2 LAP3 chr4:17590600 5'GT 17590600 Upstream 96bp 29071 chr5 118970344 118970344 1 + G A UCEC 118970345 + 118970325 118970365 41 AGAAGCAAAGGAGGAGGAGGGGCAGCCCACAGAAGAAGACC AGAAGCAAAGGAGGAGGAGAGGCAGCCCACAGAAGAAGACC < 41bp 0.533339531711828 0.739889050914605 NA NA prediction 0.413099038405554 Functional Gain - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118970345 chr5:118970344 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_31664 0 0 0 0 1 FAM170A chr5:118970429 5'GT 118970429 Upstream 86bp 29072 chr1 3672037 3672037 1 + C T UCEC 3672038 + 3672018 3672058 41 CAGGTTCACCCACTGAGGCCGATTTGTCCGGAGAGATTGAC CAGGTTCACCCACTGAGGCTGATTTGTCCGGAGAGATTGAC < 41bp 0.515676244631689 0.722224983406695 NA NA prediction 0.413097477550012 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672038 chr1:3672037 synonymous SNV . 0 20 hm7G_associated_SNPs_31665 0 0 0 0 2 CCDC27 chr1:3672021 3'AG 3672021 Downstream 17bp 29073 chr1 3672037 3672037 1 + C T UCEC 3672038 + 3672018 3672058 41 CAGGTTCACCCACTGAGGCCGATTTGTCCGGAGAGATTGAC CAGGTTCACCCACTGAGGCTGATTTGTCCGGAGAGATTGAC < 41bp 0.515676244631689 0.722224983406695 NA NA prediction 0.413097477550012 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3672038 chr1:3672037 synonymous SNV . 0 20 hm7G_associated_SNPs_31665 0 0 0 0 2 CCDC27 chr1:3672131 5'GT 3672131 Upstream 95bp 29074 chr2 96076722 96076722 1 + C T COAD 96076723 + 96076703 96076743 41 GGCTGCTGGGAAAAACCTTCGACACCTTCTGCCCTCTGGGC GGCTGCTGGGAAAAACCTTTGACACCTTCTGCCCTCTGGGC < 41bp 0.508159033992445 0.714706415010195 NA NA prediction 0.4130947620355 Functional Gain - FAHD2A ENSG00000115042 CDS Human protein_coding chr2:96076723 chr2:96076722 synonymous SNV . 0 20 hm7G_associated_SNPs_31666 0 0 0 0 1 FAHD2A chr2:96076774 5'GT 96076774 Upstream 53bp 29075 chr7 75877512 75877512 1 + G A SKCM 75877513 + 75877493 75877533 41 TGTGCCCCTGCAGGTATTCGGAGGAGGAGATTCGGCAGAAA TGTGCCCCTGCAGGTATTCAGAGGAGGAGATTCGGCAGAAA < 41bp 0.495707503004706 0.706546955022941 NA NA prediction 0.413093910045882 Functional Gain - SRRM3 ENSG00000177679 CDS Human protein_coding chr7:75877513 chr7:75877512 synonymous SNV . 0 20 hm7G_associated_SNPs_31667 0 0 0 0 2 SRRM3 chr7:75877506 3'AG 75877506 Downstream 7bp 29076 chr7 75877512 75877512 1 + G A SKCM 75877513 + 75877493 75877533 41 TGTGCCCCTGCAGGTATTCGGAGGAGGAGATTCGGCAGAAA TGTGCCCCTGCAGGTATTCAGAGGAGGAGATTCGGCAGAAA < 41bp 0.495707503004706 0.706546955022941 NA NA prediction 0.413093910045882 Functional Gain - SRRM3 ENSG00000177679 CDS Human protein_coding chr7:75877513 chr7:75877512 synonymous SNV . 0 20 hm7G_associated_SNPs_31667 0 0 0 0 2 SRRM3 chr7:75877607 5'GT 75877607 Upstream 96bp 29077 chr11 70007838 70007838 1 + C T UCEC 70007839 + 70007819 70007859 41 CGTGGCGTTCTTCAAAGGCCGGTAGGGACATCTTCAGCCTT CGTGGCGTTCTTCAAAGGCTGGTAGGGACATCTTCAGCCTT < 41bp 0.498931278422394 0.706545313832254 NA NA prediction 0.413090627664509 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70007839 chr11:70007838 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_31668 0 0 0 0 1 ANO1 chr11:70007839 5'GT 70007839 Upstream 2bp 29078 chrX 67943490 67943490 1 + G A STAD 67943491 + 67943471 67943511 41 CCGGATGGGCACCCCCTGCGGCTATGGAAGGCATCCACAGA CCGGATGGGCACCCCCTGCAGCTATGGAAGGCATCCACAGA < 41bp 0.582059843909277 0.788603389435588 NA NA prediction 0.413087091052624 Functional Gain - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67943491 chrX:67943490 nonsynonymous SNV 0.084 3 20 hm7G_associated_SNPs_31669 0 0 1 0 1 STARD8 chrX:67943468 3'AG 67943468 Downstream 23bp 29079 chr6 159185566 159185566 1 + C T UCEC 159185567 + 159185547 159185587 41 GGGGATGCATGCTCACTATCGAAGCTCCAGTGGCAGAAAGT GGGGATGCATGCTCACTATTGAAGCTCCAGTGGCAGAAAGT < 41bp 0.506455952277748 0.712999315588439 NA NA prediction 0.41308672662138 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159185567 chr6:159185566 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_31670 0 0 0 0 1 SYTL3 chr6:159185527 3'AG 159185527 Downstream 40bp 29080 chr11 6261928 6261928 1 + C T UCEC 6261929 + 6261909 6261949 41 CAACCGCAAGCTGGAGCGGCGAGTTATTGACTGGTGAGAAG CAACCGCAAGCTGGAGCGGTGAGTTATTGACTGGTGAGAAG < 41bp 0.508935987703188 0.715479106106165 NA NA prediction 0.413086236805954 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261929 chr11:6261928 stopgain 0.975 1 20 hm7G_associated_SNPs_31671 0 0 0 0 2 CNGA4 chr11:6261869 3'AG 6261869 Downstream 60bp 29081 chr11 6261928 6261928 1 + C T UCEC 6261929 + 6261909 6261949 41 CAACCGCAAGCTGGAGCGGCGAGTTATTGACTGGTGAGAAG CAACCGCAAGCTGGAGCGGTGAGTTATTGACTGGTGAGAAG < 41bp 0.508935987703188 0.715479106106165 NA NA prediction 0.413086236805954 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261929 chr11:6261928 stopgain 0.975 1 20 hm7G_associated_SNPs_31671 0 0 0 0 2 CNGA4 chr11:6261941 5'GT 6261941 Upstream 14bp 29082 chr8 11162452 11162452 1 + C T SKCM 11162453 + 11162433 11162473 41 CATCGATGATGAAGCTCTTCGGAAGGTAGCTACATTTCGAC CATCGATGATGAAGCTCTTTGGAAGGTAGCTACATTTCGAC < 41bp 0.522379576000828 0.728922182937118 NA NA prediction 0.413085213872579 Functional Gain - MTMR9 ENSG00000104643 CDS Human protein_coding chr8:11162453 chr8:11162452 nonsynonymous SNV 0.901 3 20 hm7G_associated_SNPs_31672 0 0 1 0 1 MTMR9 chr8:11162523 5'GT 11162523 Upstream 72bp 29083 chr12 121434170 121434170 1 + C T LGG 121434171 + 121434151 121434191 41 CTCCACCAAGTGTCCCCCACGGGCCTGGAGCCCAGCCACAG CTCCACCAAGTGTCCCCCATGGGCCTGGAGCCCAGCCACAG < 41bp 0.496691488873087 0.706540961066073 NA NA prediction 0.413081922132146 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121434171 chr12:121434170 nonsynonymous SNV 0.933 3 20 hm7G_associated_SNPs_31674 0 0 1 0 1 HNF1A chr12:121434216 5'GT 121434216 Upstream 47bp 29084 chr7 150704202 150704202 1 + C T UCEC 150704203 + 150704183 150704223 41 ACCCCAGGTTCTGTGTGTTCGGGCTCGGCTCCCGGGCATAC ACCCCAGGTTCTGTGTGTTTGGGCTCGGCTCCCGGGCATAC < 41bp 0.532125740231529 0.73866289796201 NA NA prediction 0.413074315460963 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150704203 chr7:150704202 synonymous SNV . 0 20 hm7G_associated_SNPs_31677 0 0 0 0 1 NOS3 chr7:150704190 3'AG 150704190 Downstream 13bp 29085 chr10 88439133 88439133 1 + G A BLCA 88439134 + 88439114 88439154 41 ATCCAATCAGATCACACCAGGCAGCAAGGCAGCCCAGTCCC ATCCAATCAGATCACACCAAGCAGCAAGGCAGCCCAGTCCC < 41bp 0.542748697188767 0.749285496284181 NA NA prediction 0.413073598190827 Functional Gain - LDB3 ENSG00000122367 CDS Human protein_coding chr10:88439134 chr10:88439133 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31678 0 0 0 0 1 LDB3 chr10:88439124 3'AG 88439124 Downstream 10bp 29086 chr3 172070872 172070872 1 + C T SKCM 172070873 + 172070853 172070893 41 CCTTCCAGAAACCACCTACCGGTGAGTGCAAGGGAGTAGAA CCTTCCAGAAACCACCTACTGGTGAGTGCAAGGGAGTAGAA < 41bp 0.498025801718134 0.706531955731409 NA NA prediction 0.413063911462817 Functional Gain - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172070873 chr3:172070872 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_31679 0 0 1 0 1 FNDC3B chr3:172070873 5'GT 172070873 Upstream 2bp 29087 chr8 133844582 133844582 1 + C T CESC 133844583 + 133844563 133844603 41 GCTTCACGAAGCATGTTTACGGAGAAAACTACAACCTATCA GCTTCACGAAGCATGTTTATGGAGAAAACTACAACCTATCA < 41bp 0.50909502805852 0.715625551213623 NA NA prediction 0.413061046310207 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133844583 chr8:133844582 nonsynonymous SNV 0.949 0 20 hm7G_associated_SNPs_31680 0 0 1 0 1 PHF20L1 chr8:133844644 5'GT 133844644 Upstream 63bp 29088 chr14 75269378 75269378 1 + C T SKCM 75269379 + 75269359 75269399 41 TCAAGACCTGGAATGTATCCGGTATGGGAGAATGTGTGCTC TCAAGACCTGGAATGTATCTGGTATGGGAGAATGTGTGCTC < 41bp 0.503702113862789 0.710232294210497 NA NA prediction 0.413060360695417 Functional Gain - YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75269379 chr14:75269378 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_31681 0 0 1 0 1 YLPM1 chr14:75269379 5'GT 75269379 Upstream 2bp 29089 chr18 74580691 74580691 1 + G A BLCA 74580692 + 74580672 74580712 41 TTACTCTGCAGAGTCAGCTGGCCGTGCACATGGAGGAGCAC TTACTCTGCAGAGTCAGCTAGCCGTGCACATGGAGGAGCAC < 41bp 0.513763949560152 0.720291715542314 NA NA prediction 0.413055531964324 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74580692 chr18:74580691 synonymous SNV . 0 20 hm7G_associated_SNPs_31682 0 0 1 0 1 ZNF236 chr18:74580641 3'AG 74580641 Downstream 51bp 29090 chr15 75108636 75108636 1 + G A rs3803568 75108637 + 75108617 75108657 41 GTGACGGGACTGGGGCGCCGGGGAGCCCAGGGCATGGTGAG GTGACGGGACTGGGGCGCCAGGGAGCCCAGGGCATGGTGAG < 41bp 0.564898865654304 0.771424953244168 NA NA prediction 0.413052175179727 Functional Gain - LMAN1L ENSG00000140506 CDS Human protein_coding chr15:75108637 chr15:75108636 nonsynonymous SNV 0.234 0 20 hm7G_associated_SNPs_31683 0 0 0 0 1 LMAN1L chr15:75108652 5'GT 75108652 Upstream 17bp 29091 chr2 232100085 232100085 1 + C T STAD 232100086 + 232100066 232100106 41 CTCTAGAGGCCACAGTCAGCGGCAAGATGGTAAGGAAGATC CTCTAGAGGCCACAGTCAGTGGCAAGATGGTAAGGAAGATC < 41bp 0.507086311665636 0.713607742264553 NA NA prediction 0.413042861197834 Functional Gain - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232100086 chr2:232100085 synonymous SNV . 0 20 hm7G_associated_SNPs_31690 0 0 1 0 1 ARMC9 chr2:232100094 5'GT 232100094 Upstream 10bp 29092 chr2 238419302 238419302 1 + C T UCEC 238419303 + 238419283 238419323 41 GAACGAGACCCACTGCGCCCGCTGCCTGCAGCCCTACCAGC GAACGAGACCCACTGCGCCTGCTGCCTGCAGCCCTACCAGC < 41bp 0.543215294566613 0.749736707795169 NA NA prediction 0.413042826457111 Functional Gain - MLPH ENSG00000115648 CDS Human protein_coding chr2:238419303 chr2:238419302 nonsynonymous SNV 0.608 2 20 hm7G_associated_SNPs_31691 0 0 0 0 1 MLPH chr2:238419217 3'AG 238419217 Downstream 86bp 29093 chr19 41622398 41622398 1 + G T SKCM 41622399 + 41622379 41622419 41 CCATGTACACAGTGCACCTGGGACCCAGGCGGGTGGTGGTC CCATGTACACAGTGCACCTTGGACCCAGGCGGGTGGTGGTC < 41bp 0.715185401214196 0.921706029121646 NA NA prediction 0.4130412558149 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622399 chr19:41622398 synonymous SNV . 0 20 hm7G_associated_SNPs_31692 0 0 0 0 1 CYP2F1 chr19:41622360 3'AG 41622360 Downstream 39bp 29094 chr20 1895791 1895791 1 + C T UCEC 1895792 + 1895772 1895812 41 TGATTCAGCCTGACAAGTCCGTGTTGGTTGCAGCTGGAGAG TGATTCAGCCTGACAAGTCTGTGTTGGTTGCAGCTGGAGAG < 41bp 0.502469808522131 0.708990031274183 NA NA prediction 0.413040445504105 Functional Gain - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1895792 chr20:1895791 synonymous SNV . 0 20 hm7G_associated_SNPs_31693 0 0 1 0 1 SIRPA chr20:1895745 3'AG 1895745 Downstream 47bp 29095 chr9 96428330 96428330 1 + G A rs34289742 96428331 + 96428311 96428351 41 CGAAGCCAAAGCTGGACTCGGCAGCGTACAAGGTGAGCTGC CGAAGCCAAAGCTGGACTCAGCAGCGTACAAGGTGAGCTGC < 41bp 0.558533056747224 0.765051953899016 NA NA prediction 0.413037794303583 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96428331 chr9:96428330 synonymous SNV . 0 20 hm7G_associated_SNPs_31694 0 0 1 0 2 PHF2 chr9:96428272 3'AG 96428272 Downstream 59bp 29096 chr9 96428330 96428330 1 + G A rs34289742 96428331 + 96428311 96428351 41 CGAAGCCAAAGCTGGACTCGGCAGCGTACAAGGTGAGCTGC CGAAGCCAAAGCTGGACTCAGCAGCGTACAAGGTGAGCTGC < 41bp 0.558533056747224 0.765051953899016 NA NA prediction 0.413037794303583 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96428331 chr9:96428330 synonymous SNV . 0 20 hm7G_associated_SNPs_31694 0 0 1 0 2 PHF2 chr9:96428342 5'GT 96428342 Upstream 13bp 29097 chr14 74416836 74416836 1 + G A rs17094161 74416837 + 74416817 74416857 41 CTTTCTAGCTTTGGCGTCTGGTTGGCTTCCAGGGCAGCCTC CTTTCTAGCTTTGGCGTCTAGTTGGCTTCCAGGGCAGCCTC < 41bp 0.513324178479789 0.719841062605392 NA NA prediction 0.413033768251207 Functional Gain - COQ6;FAM161B ENSG00000119723;ENSG00000156050 CDS Human other chr14:74416837 chr14:74416836 stopgain 0.156 1 20 hm7G_associated_SNPs_31696 1 0 0 0 1 COQ6;FAM161B chr14:74416883 5'GT 74416883 Upstream 48bp 29098 chr1 45101831 45101831 1 + C T LUSC 45101832 + 45101812 45101852 41 TCTCCTGGAAGGTGGCTTCCGAGGTACAAGCAGCTGACACG TCTCCTGGAAGGTGGCTTCTGAGGTACAAGCAGCTGACACG < 41bp 0.53593258696127 0.742443444470578 NA NA prediction 0.413021715018615 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45101832 chr1:45101831 stopgain 1.000 1 20 hm7G_associated_SNPs_31698 0 0 1 0 1 RNF220 chr1:45101834 5'GT 45101834 Upstream 4bp 29099 chr19 13919906 13919906 1 + G A COAD 13919907 + 13919887 13919927 41 CGGGAGATGCTGCGAATGCGGGACTCCAACGGGGCGCGCAT CGGGAGATGCTGCGAATGCAGGACTCCAACGGGGCGCGCAT < 41bp 0.575700854814079 0.782210904379092 NA NA prediction 0.413020099130027 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13919907 chr19:13919906 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_31699 0 0 0 0 1 ZSWIM4 chr19:13919884 3'AG 13919884 Downstream 23bp 29100 chr21 42813773 42813773 1 + G A LUSC 42813774 + 42813754 42813794 41 GGGGCCAGCAGGAGATCCAGGACCAGCTGAGCCTGTCCGAA GGGGCCAGCAGGAGATCCAAGACCAGCTGAGCCTGTCCGAA < 41bp 0.522308223751577 0.728817209487957 NA NA prediction 0.41301797147276 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42813774 chr21:42813773 synonymous SNV . 0 20 hm7G_associated_SNPs_31700 0 0 0 0 1 MX1 chr21:42813841 5'GT 42813841 Upstream 69bp 29101 chr20 3802913 3802913 1 + G A PRAD 3802914 + 3802894 3802934 41 GAGAGGGACAGGCTTCTCCGGAAGGAACAGATTTTAGCTGT GAGAGGGACAGGCTTCTCCAGAAGGAACAGATTTTAGCTGT < 41bp 0.519842588254751 0.726348311312482 NA NA prediction 0.413011446115463 Functional Gain - AP5S1 ENSG00000125843 CDS Human protein_coding chr20:3802914 chr20:3802913 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_31702 0 0 1 0 1 AP5S1 chr20:3802940 5'GT 3802940 Upstream 28bp 29102 chr14 24526137 24526137 1 + C T CESC 24526138 + 24526118 24526158 41 GCTCAGGGCTCCAGGCACTCGGCCAGACCTTCGGGGCAAAC GCTCAGGGCTCCAGGCACTTGGCCAGACCTTCGGGGCAAAC < 41bp 0.545680990975727 0.752184585186175 NA NA prediction 0.413007188420895 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24526138 chr14:24526137 synonymous SNV . 0 20 hm7G_associated_SNPs_31703 0 0 0 0 2 CARMIL3 chr14:24526124 3'AG 24526124 Downstream 14bp 29103 chr14 24526137 24526137 1 + C T CESC 24526138 + 24526118 24526158 41 GCTCAGGGCTCCAGGCACTCGGCCAGACCTTCGGGGCAAAC GCTCAGGGCTCCAGGCACTTGGCCAGACCTTCGGGGCAAAC < 41bp 0.545680990975727 0.752184585186175 NA NA prediction 0.413007188420895 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24526138 chr14:24526137 synonymous SNV . 0 20 hm7G_associated_SNPs_31703 0 0 0 0 2 CARMIL3 chr14:24526233 5'GT 24526233 Upstream 97bp 29104 chr8 145616165 145616165 1 + G A BLCA 145616166 + 145616146 145616186 41 TACGTGAAGCTGGGCCAGGGGCTGTGCTCCTTCAACCACCT TACGTGAAGCTGGGCCAGGAGCTGTGCTCCTTCAACCACCT < 41bp 0.476959162117525 0.706500311813578 NA NA prediction 0.413000623627156 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145616166 chr8:145616165 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_31704 0 0 0 0 1 ADCK5 chr8:145616256 5'GT 145616256 Upstream 92bp 29105 chrX 152815520 152815520 1 + C T UCEC 152815521 + 152815501 152815541 41 AGCCTCCTGAGAAGGAAGGCGCCCTCCCACGCCAGGTGGGC AGCCTCCTGAGAAGGAAGGTGCCCTCCCACGCCAGGTGGGC < 41bp 0.493367294667261 0.706497382666722 NA NA prediction 0.412994765333444 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152815521 chrX:152815520 synonymous SNV . 0 20 hm7G_associated_SNPs_31706 0 0 0 0 1 ATP2B3 chrX:152815503 3'AG 152815503 Downstream 18bp 29106 chr3 9775871 9775871 1 + C T COAD 9775872 + 9775852 9775892 41 TTCTGCCACAACTTGCGGGCGACTAAGCCACCATACGAGTG TTCTGCCACAACTTGCGGGTGACTAAGCCACCATACGAGTG < 41bp 0.502148331520136 0.708641070858013 NA NA prediction 0.412985478675753 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9775872 chr3:9775871 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31708 0 0 1 0 1 BRPF1 chr3:9775815 3'AG 9775815 Downstream 57bp 29107 chr10 121182724 121182724 1 + C T OV 121182725 + 121182705 121182745 41 CAAGACCTGGTCTCCCAGACGGAGGAGAAGCTCCTACAGAA CAAGACCTGGTCTCCCAGATGGAGGAGAAGCTCCTACAGAA < 41bp 0.544204748623545 0.75069497886131 NA NA prediction 0.41298046047553 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121182725 chr10:121182724 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_31710 0 0 1 0 2 GRK5 chr10:121182678 3'AG 121182678 Downstream 47bp 29108 chr10 121182724 121182724 1 + C T OV 121182725 + 121182705 121182745 41 CAAGACCTGGTCTCCCAGACGGAGGAGAAGCTCCTACAGAA CAAGACCTGGTCTCCCAGATGGAGGAGAAGCTCCTACAGAA < 41bp 0.544204748623545 0.75069497886131 NA NA prediction 0.41298046047553 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121182725 chr10:121182724 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_31710 0 0 1 0 2 GRK5 chr10:121182778 5'GT 121182778 Upstream 55bp 29109 chr1 57159484 57159484 1 + C T COAD 57159485 + 57159465 57159505 41 AATTTCTGAGAACTAGTTGCGGATCTCCAAATTATGCAGCA AATTTCTGAGAACTAGTTGTGGATCTCCAAATTATGCAGCA < 41bp 0.530099215959831 0.736587676142544 NA NA prediction 0.412976920365426 Functional Gain - PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57159485 chr1:57159484 synonymous SNV . 0 20 hm7G_associated_SNPs_31712 0 0 1 0 2 PRKAA2 chr1:57159438 3'AG 57159438 Downstream 47bp 29110 chr1 57159484 57159484 1 + C T COAD 57159485 + 57159465 57159505 41 AATTTCTGAGAACTAGTTGCGGATCTCCAAATTATGCAGCA AATTTCTGAGAACTAGTTGTGGATCTCCAAATTATGCAGCA < 41bp 0.530099215959831 0.736587676142544 NA NA prediction 0.412976920365426 Functional Gain - PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57159485 chr1:57159484 synonymous SNV . 0 20 hm7G_associated_SNPs_31712 0 0 1 0 2 PRKAA2 chr1:57159525 5'GT 57159525 Upstream 42bp 29111 chr19 19349079 19349079 1 + C T LUAD 19349080 + 19349060 19349100 41 AGACACCGAGGGCTGTGACCGCGGCTGGCATAAGTTCCAGG AGACACCGAGGGCTGTGACTGCGGCTGGCATAAGTTCCAGG < 41bp 0.533463215513124 0.739950211905737 NA NA prediction 0.412973992785226 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349080 chr19:19349079 nonsynonymous SNV 0.726 1 20 hm7G_associated_SNPs_31715 0 0 1 0 1 NCAN chr19:19349062 3'AG 19349062 Downstream 18bp 29112 chr16 56370737 56370737 1 + G A LUAD 56370738 + 56370718 56370758 41 TTTCTGTGTCGCGCTCAGCGGCTATGACCAGGTGCTCCACG TTTCTGTGTCGCGCTCAGCAGCTATGACCAGGTGCTCCACG < 41bp 0.495103376865826 0.706482800612201 NA NA prediction 0.412965601224403 Functional Gain - GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56370738 chr16:56370737 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_31717 0 0 0 0 2 GNAO1 chr16:56370643 3'AG 56370643 Downstream 95bp 29113 chr16 56370737 56370737 1 + G A LUAD 56370738 + 56370718 56370758 41 TTTCTGTGTCGCGCTCAGCGGCTATGACCAGGTGCTCCACG TTTCTGTGTCGCGCTCAGCAGCTATGACCAGGTGCTCCACG < 41bp 0.495103376865826 0.706482800612201 NA NA prediction 0.412965601224403 Functional Gain - GNAO1 ENSG00000087258 CDS Human protein_coding chr16:56370738 chr16:56370737 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_31717 0 0 0 0 2 GNAO1 chr16:56370772 5'GT 56370772 Upstream 36bp 29114 chr19 54942051 54942051 1 + C T ESCA 54942052 + 54942032 54942072 41 CCAGCTGCTGGGCCTGGAGCGAGAAGCTGTGCCTCAGTTCC CCAGCTGCTGGGCCTGGAGTGAGAAGCTGTGCCTCAGTTCC < 41bp 0.503403209873929 0.709885560734004 NA NA prediction 0.41296470172015 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942052 chr19:54942051 stopgain 0.809 1 20 hm7G_associated_SNPs_31718 0 0 0 0 2 TTYH1 chr19:54941991 3'AG 54941991 Downstream 61bp 29115 chr19 54942051 54942051 1 + C T ESCA 54942052 + 54942032 54942072 41 CCAGCTGCTGGGCCTGGAGCGAGAAGCTGTGCCTCAGTTCC CCAGCTGCTGGGCCTGGAGTGAGAAGCTGTGCCTCAGTTCC < 41bp 0.503403209873929 0.709885560734004 NA NA prediction 0.41296470172015 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54942052 chr19:54942051 stopgain 0.809 1 20 hm7G_associated_SNPs_31718 0 0 0 0 2 TTYH1 chr19:54942083 5'GT 54942083 Upstream 33bp 29116 chr3 47451033 47451033 1 + C T UCEC 47451034 + 47451014 47451054 41 GCAGTACGCAGCCGTGCGGCGGGTACTCAGCGACTTGGACC GCAGTACGCAGCCGTGCGGTGGGTACTCAGCGACTTGGACC < 41bp 0.519699003513953 0.72618080503464 NA NA prediction 0.412963603041375 Functional Gain - PTPN23 ENSG00000076201 CDS Human protein_coding chr3:47451034 chr3:47451033 nonsynonymous SNV 0.699 3 20 hm7G_associated_SNPs_31719 0 0 1 0 1 PTPN23 chr3:47451058 5'GT 47451058 Upstream 26bp 29117 chr1 3389759 3389759 1 + C T COAD 3389760 + 3389740 3389780 41 ACATCGCCTACTGCTCCAACGAGGTCTACCAACAGCGCACG ACATCGCCTACTGCTCCAATGAGGTCTACCAACAGCGCACG < 41bp 0.513159408239645 0.719640665380271 NA NA prediction 0.412962514281252 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3389760 chr1:3389759 synonymous SNV . 0 20 hm7G_associated_SNPs_31720 0 0 1 0 1 ARHGEF16 chr1:3389794 5'GT 3389794 Upstream 36bp 29118 chr5 68412312 68412312 1 + G T LGG 68412313 + 68412293 68412333 41 CACCTCTTTATAACTTCATGGGTGATGCTTTTCAGCATAGC CACCTCTTTATAACTTCATTGGTGATGCTTTTCAGCATAGC < 41bp 0.367548176966948 0.706478539528376 NA NA prediction 0.412957079056752 Functional Gain - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68412313 chr5:68412312 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_31722 0 0 1 0 1 SLC30A5 chr5:68412221 3'AG 68412221 Downstream 92bp 29119 chrX 43587532 43587532 1 + C T UCEC 43587533 + 43587513 43587553 41 GCAGTGCGGGGGCACCACTCGGATATTCTCTGTCACCAATG GCAGTGCGGGGGCACCACTTGGATATTCTCTGTCACCAATG < 41bp 0.538872690722758 0.745350615535621 NA NA prediction 0.412955849625726 Functional Gain - MAOA ENSG00000189221 CDS Human protein_coding chrX:43587533 chrX:43587532 nonsynonymous SNV 0.990 5 20 hm7G_associated_SNPs_31723 0 0 1 0 1 MAOA chrX:43587561 5'GT 43587561 Upstream 30bp 29120 chr17 7405419 7405419 1 + G T BLCA 7405420 + 7405400 7405440 41 GTGAGGGGCTCATTGACACGGCTGTCAAGACTGCTGAGACT GTGAGGGGCTCATTGACACTGCTGTCAAGACTGCTGAGACT < 41bp 0.353841517088823 0.70647489647613 NA NA prediction 0.41294979295226 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7405420 chr17:7405419 synonymous SNV . 0 20 hm7G_associated_SNPs_31727 0 0 1 0 1 POLR2A chr17:7405441 5'GT 7405441 Upstream 23bp 29121 chr2 27279541 27279541 1 + C T BLCA 27279542 + 27279522 27279562 41 CCTTGAATTCAGCCCACTTCGACTTCCAGGGCTGCAATTTC CCTTGAATTCAGCCCACTTTGACTTCCAGGGCTGCAATTTC < 41bp 0.496974695006662 0.706471580056057 NA NA prediction 0.412943160112114 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27279542 chr2:27279541 synonymous SNV . 0 20 hm7G_associated_SNPs_31731 0 0 1 0 1 AGBL5 chr2:27279491 3'AG 27279491 Downstream 51bp 29122 chr16 311468 311468 1 + C T rs180686936 311469 + 311449 311489 41 AGGTGCCTGATGTGGACGGCGATGGGGCCCCAGACCTGCTG AGGTGCCTGATGTGGACGGTGATGGGGCCCCAGACCTGCTG < 41bp 0.537406037015971 0.743873124247238 NA NA prediction 0.412934174462533 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:311469 chr16:311468 synonymous SNV . 0 20 hm7G_associated_SNPs_31733 0 0 1 0 2 FAM234A chr16:311383 3'AG 311383 Downstream 86bp 29123 chr16 311468 311468 1 + C T rs180686936 311469 + 311449 311489 41 AGGTGCCTGATGTGGACGGCGATGGGGCCCCAGACCTGCTG AGGTGCCTGATGTGGACGGTGATGGGGCCCCAGACCTGCTG < 41bp 0.537406037015971 0.743873124247238 NA NA prediction 0.412934174462533 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:311469 chr16:311468 synonymous SNV . 0 20 hm7G_associated_SNPs_31733 0 0 1 0 2 FAM234A chr16:311513 5'GT 311513 Upstream 46bp 29124 chr17 73569168 73569168 1 + G A rs533568617 73569169 + 73569149 73569189 41 GAGGGCTCAAGAGTGCGGCGGGTCAGCGTGGCCCACTTCGG GAGGGCTCAAGAGTGCGGCAGGTCAGCGTGGCCCACTTCGG < 41bp 0.559499268521683 0.765965574506968 NA NA prediction 0.412932611970571 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73569169 chr17:73569168 nonsynonymous SNV 0.960 3 20 hm7G_associated_SNPs_31735 0 0 1 0 1 LLGL2 chr17:73569095 3'AG 73569095 Downstream 74bp 29125 chr7 930668 930668 1 + C T COAD 930669 + 930649 930689 41 CGTCCCGCGGCTTCCGCAGCGAGGTGGACATGTTCGTGGCC CGTCCCGCGGCTTCCGCAGTGAGGTGGACATGTTCGTGGCC < 41bp 0.501511914006365 0.707974909246079 NA NA prediction 0.41292599047943 Functional Gain - GET4 ENSG00000239857 CDS Human protein_coding chr7:930669 chr7:930668 synonymous SNV . 0 20 hm7G_associated_SNPs_31736 0 0 1 0 1 GET4 chr7:930703 5'GT 930703 Upstream 36bp 29126 chr7 129710634 129710634 1 + C T LUSC 129710635 + 129710615 129710655 41 CTTCGTGCAACTCTCCGGGCGGCCGCACCTGCCAGGTGAGT CTTCGTGCAACTCTCCGGGTGGCCGCACCTGCCAGGTGAGT < 41bp 0.506514103183848 0.71297685005004 NA NA prediction 0.412925493732385 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129710635 chr7:129710634 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31737 0 0 1 0 1 KLHDC10 chr7:129710649 5'GT 129710649 Upstream 16bp 29127 chr16 28948420 28948420 1 + G A BRCA 28948421 + 28948401 28948441 41 CGAGCAGCGACGTCCAGGCGGATGGAGCCTTGGGGTCCCGG CGAGCAGCGACGTCCAGGCAGATGGAGCCTTGGGGTCCCGG < 41bp 0.544117023906307 0.750579680222147 NA NA prediction 0.41292531263168 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28948421 chr16:28948420 synonymous SNV . 0 20 hm7G_associated_SNPs_31738 0 0 0 0 2 CD19 chr16:28948344 3'AG 28948344 Downstream 77bp 29128 chr16 28948420 28948420 1 + G A BRCA 28948421 + 28948401 28948441 41 CGAGCAGCGACGTCCAGGCGGATGGAGCCTTGGGGTCCCGG CGAGCAGCGACGTCCAGGCAGATGGAGCCTTGGGGTCCCGG < 41bp 0.544117023906307 0.750579680222147 NA NA prediction 0.41292531263168 Functional Gain - CD19 ENSG00000177455 CDS Human protein_coding chr16:28948421 chr16:28948420 synonymous SNV . 0 20 hm7G_associated_SNPs_31738 0 0 0 0 2 CD19 chr16:28948457 5'GT 28948457 Upstream 38bp 29129 chr16 8873401 8873401 1 + C T COAD 8873402 + 8873382 8873422 41 TTTGCTCCTTCGATACTCCCGATGATTCCATACGGAATAAG TTTGCTCCTTCGATACTCCTGATGATTCCATACGGAATAAG < 41bp 0.48535972816758 0.706462316622684 NA NA prediction 0.412924633245368 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8873402 chr16:8873401 synonymous SNV . 0 20 hm7G_associated_SNPs_31739 0 0 1 0 2 ABAT chr16:8873336 3'AG 8873336 Downstream 66bp 29130 chr16 8873401 8873401 1 + C T COAD 8873402 + 8873382 8873422 41 TTTGCTCCTTCGATACTCCCGATGATTCCATACGGAATAAG TTTGCTCCTTCGATACTCCTGATGATTCCATACGGAATAAG < 41bp 0.48535972816758 0.706462316622684 NA NA prediction 0.412924633245368 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8873402 chr16:8873401 synonymous SNV . 0 20 hm7G_associated_SNPs_31739 0 0 1 0 2 ABAT chr16:8873447 5'GT 8873447 Upstream 47bp 29131 chr18 43319621 43319621 1 + G A SKCM 43319622 + 43319602 43319642 41 AACCCACCTCCTGGCTCTTGGCTGTGGTGAGTCTCCCACGC AACCCACCTCCTGGCTCTTAGCTGTGGTGAGTCTCCCACGC < 41bp 0.510130772410379 0.716592657123606 NA NA prediction 0.412923769426454 Functional Gain - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43319622 chr18:43319621 nonsynonymous SNV 0.940 0 20 hm7G_associated_SNPs_31740 0 0 0 0 1 SLC14A1 chr18:43319627 5'GT 43319627 Upstream 7bp 29132 chr6 35715079 35715079 1 + G A SKCM 35715080 + 35715060 35715100 41 AACTGATCTCCACCATCTGGGACACGGAACTGCACATTGCG AACTGATCTCCACCATCTGAGACACGGAACTGCACATTGCG < 41bp 0.513084000083307 0.719542839909128 NA NA prediction 0.412917679651644 Functional Gain - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35715080 chr6:35715079 stopgain 0.998 1 20 hm7G_associated_SNPs_31741 0 0 0 0 1 ARMC12 chr6:35715038 3'AG 35715038 Downstream 42bp 29133 chr19 41094601 41094601 1 + G A KIRC 41094602 + 41094582 41094622 41 CATGATTTCCACCCAGCCCGGCTCCACCCCACTCGCTTCCT CATGATTTCCACCCAGCCCAGCTCCACCCCACTCGCTTCCT < 41bp 0.562788097505246 0.769245029385746 NA NA prediction 0.412913863761 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41094602 chr19:41094601 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_31742 0 0 1 0 2 SHKBP1 chr19:41094530 3'AG 41094530 Downstream 72bp 29134 chr19 41094601 41094601 1 + G A KIRC 41094602 + 41094582 41094622 41 CATGATTTCCACCCAGCCCGGCTCCACCCCACTCGCTTCCT CATGATTTCCACCCAGCCCAGCTCCACCCCACTCGCTTCCT < 41bp 0.562788097505246 0.769245029385746 NA NA prediction 0.412913863761 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41094602 chr19:41094601 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_31742 0 0 1 0 2 SHKBP1 chr19:41094685 5'GT 41094685 Upstream 85bp 29135 chr20 42680169 42680169 1 + C T STAD 42680170 + 42680150 42680190 41 TCCACTCAGGAAGAGGAGTCGGAAGTGCATTTCAAGGTATG TCCACTCAGGAAGAGGAGTTGGAAGTGCATTTCAAGGTATG < 41bp 0.523512440563848 0.729968891576126 NA NA prediction 0.412912902024556 Functional Gain - TOX2 ENSG00000124191 CDS Human protein_coding chr20:42680170 chr20:42680169 nonsynonymous SNV 0.159 0 20 hm7G_associated_SNPs_31743 0 0 0 0 1 TOX2 chr20:42680185 5'GT 42680185 Upstream 17bp 29136 chr11 93815725 93815725 1 + C T UCEC 93815726 + 93815706 93815746 41 AGAGTTTGTGAAATCCAACCGAATGCATGGTATGACAAATG AGAGTTTGTGAAATCCAACTGAATGCATGGTATGACAAATG < 41bp 0.510621351878646 0.717077609169345 NA NA prediction 0.412912514581398 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93815726 chr11:93815725 stopgain 0.997 0 20 hm7G_associated_SNPs_31744 0 0 0 0 1 HEPHL1 chr11:93815734 5'GT 93815734 Upstream 10bp 29137 chr14 21794062 21794062 1 + C T CESC 21794063 + 21794043 21794083 41 GTGCTGTGGCCTCCGGAGTCGATGGCTGGGAACTCAACCCA GTGCTGTGGCCTCCGGAGTTGATGGCTGGGAACTCAACCCA < 41bp 0.545735105146719 0.752186371806911 NA NA prediction 0.412902533320384 Functional Gain - RPGRIP1 ENSG00000092200 CDS Human protein_coding chr14:21794063 chr14:21794062 stopgain 1.000 1 20 hm7G_associated_SNPs_31745 0 0 0 0 1 RPGRIP1 chr14:21793990 3'AG 21793990 Downstream 73bp 29138 chr6 35201018 35201018 1 + G A UCEC 35201019 + 35200999 35201039 41 GTGTGATGACACAGAGCAGGGTCCCCGGTGCGGCTGCCATA GTGTGATGACACAGAGCAGAGTCCCCGGTGCGGCTGCCATA < 41bp 0.518850795533662 0.725301623525829 NA NA prediction 0.412901655984332 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35201019 chr6:35201018 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31746 0 0 0 0 2 SCUBE3 chr6:35200962 3'AG 35200962 Downstream 57bp 29139 chr6 35201018 35201018 1 + G A UCEC 35201019 + 35200999 35201039 41 GTGTGATGACACAGAGCAGGGTCCCCGGTGCGGCTGCCATA GTGTGATGACACAGAGCAGAGTCCCCGGTGCGGCTGCCATA < 41bp 0.518850795533662 0.725301623525829 NA NA prediction 0.412901655984332 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35201019 chr6:35201018 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31746 0 0 0 0 2 SCUBE3 chr6:35201078 5'GT 35201078 Upstream 61bp 29140 chr16 81736238 81736238 1 + C T UCEC 81736239 + 81736219 81736259 41 TGTTGCAGCAAAGGAAAGGCGGGCCCACCAGGCTAACACTG TGTTGCAGCAAAGGAAAGGTGGGCCCACCAGGCTAACACTG < 41bp 0.522514509451013 0.728964969191912 NA NA prediction 0.412900919481799 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81736239 chr16:81736238 synonymous SNV . 0 20 hm7G_associated_SNPs_31747 0 0 1 0 2 CMIP chr16:81736227 3'AG 81736227 Downstream 12bp 29141 chr16 81736238 81736238 1 + C T UCEC 81736239 + 81736219 81736259 41 TGTTGCAGCAAAGGAAAGGCGGGCCCACCAGGCTAACACTG TGTTGCAGCAAAGGAAAGGTGGGCCCACCAGGCTAACACTG < 41bp 0.522514509451013 0.728964969191912 NA NA prediction 0.412900919481799 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81736239 chr16:81736238 synonymous SNV . 0 20 hm7G_associated_SNPs_31747 0 0 1 0 2 CMIP chr16:81736274 5'GT 81736274 Upstream 37bp 29142 chr19 50195561 50195561 1 + G A COAD 50195562 + 50195542 50195582 41 ACCCTCGCTGACCTCGGACGGGGCTGAAGTGGAACTCAGTG ACCCTCGCTGACCTCGGACAGGGCTGAAGTGGAACTCAGTG < 41bp 0.547501973598143 0.753950770042698 NA NA prediction 0.412897592889111 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50195562 chr19:50195561 nonsynonymous SNV 0.325 4 20 hm7G_associated_SNPs_31749 0 0 0 0 2 CPT1C chr19:50195496 3'AG 50195496 Downstream 66bp 29143 chr19 50195561 50195561 1 + G A COAD 50195562 + 50195542 50195582 41 ACCCTCGCTGACCTCGGACGGGGCTGAAGTGGAACTCAGTG ACCCTCGCTGACCTCGGACAGGGCTGAAGTGGAACTCAGTG < 41bp 0.547501973598143 0.753950770042698 NA NA prediction 0.412897592889111 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50195562 chr19:50195561 nonsynonymous SNV 0.325 4 20 hm7G_associated_SNPs_31749 0 0 0 0 2 CPT1C chr19:50195650 5'GT 50195650 Upstream 90bp 29144 chr7 45930252 45930252 1 + G A LUAD 45930253 + 45930233 45930273 41 GAGGATCATTCCATCCTTTGGGACGCCATCAGTACCTATGA GAGGATCATTCCATCCTTTAGGACGCCATCAGTACCTATGA < 41bp 0.492398166860824 0.706448435506633 NA NA prediction 0.412896871013267 Functional Gain - IGFBP1 ENSG00000146678 CDS Human protein_coding chr7:45930253 chr7:45930252 stopgain 0.016 0 20 hm7G_associated_SNPs_31750 0 0 1 0 1 IGFBP1 chr7:45930316 5'GT 45930316 Upstream 65bp 29145 chrX 70347830 70347830 1 + C T GBM 70347831 + 70347811 70347851 41 GGGCACCTGAGTTCATGATCGACACTCTAGAGAACCCTGCA GGGCACCTGAGTTCATGATTGACACTCTAGAGAACCCTGCA < 41bp 0.518282127875129 0.724724919732556 NA NA prediction 0.412885583714854 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70347831 chrX:70347830 synonymous SNV . 0 20 hm7G_associated_SNPs_31753 0 0 1 0 1 MED12 chrX:70347743 3'AG 70347743 Downstream 88bp 29146 chr3 126733335 126733335 1 + G A COAD 126733336 + 126733316 126733356 41 CTCAGCTGTCCCCCGAGACGGGCCCGAGGCAGGGCGGCACG CTCAGCTGTCCCCCGAGACAGGCCCGAGGCAGGGCGGCACG < 41bp 0.478664666457639 0.706441535885629 NA NA prediction 0.412883071771258 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126733336 chr3:126733335 synonymous SNV . 0 20 hm7G_associated_SNPs_31754 0 0 1 0 1 PLXNA1 chr3:126733321 3'AG 126733321 Downstream 15bp 29147 chr16 675929 675929 1 + G A COAD 675930 + 675910 675950 41 AGTCCCCCGGATCTTGGTTGGAAACCGGCTGCACCTGGCCT AGTCCCCCGGATCTTGGTTAGAAACCGGCTGCACCTGGCCT < 41bp 0.483660207144036 0.706440482037317 NA NA prediction 0.412880964074634 Functional Gain - RAB40C ENSG00000197562 CDS Human protein_coding chr16:675930 chr16:675929 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31756 0 0 1 0 1 RAB40C chr16:675899 3'AG 675899 Downstream 31bp 29148 chr20 36026109 36026109 1 + C T UCEC 36026110 + 36026090 36026130 41 CCTCCTCCTCAGAACACGCCGATGGCCTGTGCCACCGCCTC CCTCCTCCTCAGAACACGCTGATGGCCTGTGCCACCGCCTC < 41bp 0.528609102344078 0.73504842100748 NA NA prediction 0.412878637326805 Functional Gain - SRC ENSG00000197122 CDS Human protein_coding chr20:36026110 chr20:36026109 synonymous SNV . 0 20 hm7G_associated_SNPs_31757 0 0 1 0 1 SRC chr20:36026102 3'AG 36026102 Downstream 8bp 29149 chr16 72110287 72110287 1 + G T COAD 72110288 + 72110268 72110308 41 AAGGCAGCTTTCCCTGGCAGGCTAAGATGGTTTCCCACCAT AAGGCAGCTTTCCCTGGCATGCTAAGATGGTTTCCCACCAT < 41bp 0.697404154629738 0.903842789794358 NA NA prediction 0.412877270329242 Functional Gain - HPR ENSG00000261701 CDS Human protein_coding chr16:72110288 chr16:72110287 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_31758 0 0 0 0 1 HPR chr16:72110202 3'AG 72110202 Downstream 86bp 29150 chr20 36954722 36954722 1 + C T COAD 36954723 + 36954703 36954743 41 CATGTCTCAGCCTCCACCCCGCCACACCTGTCTGTGCAGCC CATGTCTCAGCCTCCACCCTGCCACACCTGTCTGTGCAGCC < 41bp 0.519344976207849 0.725778686652397 NA NA prediction 0.412867420889096 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36954723 chr20:36954722 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_31760 0 0 0 0 1 BPI chr20:36954667 3'AG 36954667 Downstream 56bp 29151 chr1 151502428 151502428 1 + G A KIRP 151502429 + 151502409 151502449 41 GCAACAGTGCTGGGGCAGCGGCGGGCCGCAGTGGAGACGAC GCAACAGTGCTGGGGCAGCAGCGGGCCGCAGTGGAGACGAC < 41bp 0.537090161596884 0.743518883439939 NA NA prediction 0.41285744368611 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151502429 chr1:151502428 nonsynonymous SNV 0.371 1 20 hm7G_associated_SNPs_31761 0 0 0 0 1 CGN chr1:151502385 3'AG 151502385 Downstream 44bp 29152 chr19 14805910 14805910 1 + G T SARC 14805911 + 14805891 14805931 41 AGGAGCCTGTGCAAATACAGGATGCTTGACCAGTGCAGGAC AGGAGCCTGTGCAAATACATGATGCTTGACCAGTGCAGGAC < 41bp 0.369815183517684 0.706427732399831 NA NA prediction 0.412855464799662 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14805911 chr19:14805910 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_31762 0 0 1 0 2 ZNF333 chr19:14805822 3'AG 14805822 Downstream 89bp 29153 chr19 14805910 14805910 1 + G T SARC 14805911 + 14805891 14805931 41 AGGAGCCTGTGCAAATACAGGATGCTTGACCAGTGCAGGAC AGGAGCCTGTGCAAATACATGATGCTTGACCAGTGCAGGAC < 41bp 0.369815183517684 0.706427732399831 NA NA prediction 0.412855464799662 Functional Gain - ZNF333 ENSG00000160961 CDS Human protein_coding chr19:14805911 chr19:14805910 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_31762 0 0 1 0 2 ZNF333 chr19:14805945 5'GT 14805945 Upstream 36bp 29154 chr18 21649138 21649138 1 + C T SKCM 21649139 + 21649119 21649159 41 AGGTTGATGTCCGAAAATCCGCCCCCTCTATGGTTGATCGG AGGTTGATGTCCGAAAATCTGCCCCCTCTATGGTTGATCGG < 41bp 0.522884730957072 0.729310804692881 NA NA prediction 0.412852147471617 Functional Gain - TTC39C ENSG00000168234 CDS Human protein_coding chr18:21649139 chr18:21649138 synonymous SNV . 0 20 hm7G_associated_SNPs_31763 0 0 0 0 2 TTC39C chr18:21649121 3'AG 21649121 Downstream 18bp 29155 chr18 21649138 21649138 1 + C T SKCM 21649139 + 21649119 21649159 41 AGGTTGATGTCCGAAAATCCGCCCCCTCTATGGTTGATCGG AGGTTGATGTCCGAAAATCTGCCCCCTCTATGGTTGATCGG < 41bp 0.522884730957072 0.729310804692881 NA NA prediction 0.412852147471617 Functional Gain - TTC39C ENSG00000168234 CDS Human protein_coding chr18:21649139 chr18:21649138 synonymous SNV . 0 20 hm7G_associated_SNPs_31763 0 0 0 0 2 TTC39C chr18:21649235 5'GT 21649235 Upstream 98bp 29156 chr19 49079224 49079224 1 + G A rs117476816 49079225 + 49079205 49079245 41 TTGCCAGGTGAATACTTCCGGTACAAGGGCGTCCCCTTCCC TTGCCAGGTGAATACTTCCAGTACAAGGGCGTCCCCTTCCC < 41bp 0.482406489908493 0.706425065510689 NA NA prediction 0.412850131021378 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49079225 chr19:49079224 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_31764 0 0 0 0 1 SULT2B1 chr19:49079198 3'AG 49079198 Downstream 27bp 29157 chr20 39983460 39983460 1 + C T UCEC 39983461 + 39983441 39983481 41 ATGGATGTTCTTTCCACAGCGCAGTGCCCAGAAGGAGAAGA ATGGATGTTCTTTCCACAGTGCAGTGCCCAGAAGGAGAAGA < 41bp 0.52678741466987 0.733209564793436 NA NA prediction 0.412844300247133 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39983461 chr20:39983460 nonsynonymous SNV 0.416 0 20 hm7G_associated_SNPs_31766 0 0 1 0 2 LPIN3 chr20:39983460 3'AG 39983460 Downstream 1bp 29158 chr20 39983460 39983460 1 + C T UCEC 39983461 + 39983441 39983481 41 ATGGATGTTCTTTCCACAGCGCAGTGCCCAGAAGGAGAAGA ATGGATGTTCTTTCCACAGTGCAGTGCCCAGAAGGAGAAGA < 41bp 0.52678741466987 0.733209564793436 NA NA prediction 0.412844300247133 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39983461 chr20:39983460 nonsynonymous SNV 0.416 0 20 hm7G_associated_SNPs_31766 0 0 1 0 2 LPIN3 chr20:39983503 5'GT 39983503 Upstream 44bp 29159 chr5 140048511 140048511 1 + G A OV 140048512 + 140048492 140048532 41 GGCATCTTCAACATTAAGAGGCGTCGGTTTGAGCTGCTCTC GGCATCTTCAACATTAAGAAGCGTCGGTTTGAGCTGCTCTC < 41bp 0.521323434793847 0.727743208247236 NA NA prediction 0.412839546906779 Functional Gain - WDR55 ENSG00000120314 CDS Human protein_coding chr5:140048512 chr5:140048511 nonsynonymous SNV 0.804 1 20 hm7G_associated_SNPs_31767 0 0 1 0 2 WDR55 chr5:140048476 3'AG 140048476 Downstream 36bp 29160 chr5 140048511 140048511 1 + G A OV 140048512 + 140048492 140048532 41 GGCATCTTCAACATTAAGAGGCGTCGGTTTGAGCTGCTCTC GGCATCTTCAACATTAAGAAGCGTCGGTTTGAGCTGCTCTC < 41bp 0.521323434793847 0.727743208247236 NA NA prediction 0.412839546906779 Functional Gain - WDR55 ENSG00000120314 CDS Human protein_coding chr5:140048512 chr5:140048511 nonsynonymous SNV 0.804 1 20 hm7G_associated_SNPs_31767 0 0 1 0 2 WDR55 chr5:140048575 5'GT 140048575 Upstream 65bp 29161 chr20 42165071 42165071 1 + C T SKCM 42165072 + 42165052 42165092 41 TGGACGCCCTCCGAAGTATCGAAAGATTCCGCAGGAAGATT TGGACGCCCTCCGAAGTATTGAAAGATTCCGCAGGAAGATT < 41bp 0.529200127775423 0.735619535417925 NA NA prediction 0.412838815285004 Functional Gain - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42165072 chr20:42165071 stopgain 0.998 0 20 hm7G_associated_SNPs_31768 0 0 1 0 1 L3MBTL1 chr20:42165049 3'AG 42165049 Downstream 23bp 29162 chr11 65387008 65387008 1 + C T STAD 65387009 + 65386989 65387029 41 GGGGCCTCTCTCTGGGCAGCGGCCGAGGAGACTGGCAGGCG GGGGCCTCTCTCTGGGCAGTGGCCGAGGAGACTGGCAGGCG < 41bp 0.502520340294822 0.708935381751706 NA NA prediction 0.412830082913769 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65387009 chr11:65387008 nonsynonymous SNV 0.376 1 20 hm7G_associated_SNPs_31770 0 0 1 0 1 PCNX3 chr11:65387008 3'AG 65387008 Downstream 1bp 29163 chr15 22925811 22925811 1 + C T UCEC 22925812 + 22925792 22925832 41 CAGGTGACTCTGGAGGACGCGCTGTCCAACGTGGACCTCCT CAGGTGACTCTGGAGGACGTGCTGTCCAACGTGGACCTCCT < 41bp 0.531238165083581 0.737649394927342 NA NA prediction 0.412822459687522 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22925812 chr15:22925811 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_31774 0 0 1 0 2 CYFIP1 chr15:22925777 3'AG 22925777 Downstream 35bp 29164 chr15 22925811 22925811 1 + C T UCEC 22925812 + 22925792 22925832 41 CAGGTGACTCTGGAGGACGCGCTGTCCAACGTGGACCTCCT CAGGTGACTCTGGAGGACGTGCTGTCCAACGTGGACCTCCT < 41bp 0.531238165083581 0.737649394927342 NA NA prediction 0.412822459687522 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22925812 chr15:22925811 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_31774 0 0 1 0 2 CYFIP1 chr15:22925899 5'GT 22925899 Upstream 89bp 29165 chr12 122676111 122676111 1 + C T COAD 122676112 + 122676092 122676132 41 AGTCCGCGGGCGTCCTGGCCGAGGTGTGCCCTGGTCTGTCC AGTCCGCGGGCGTCCTGGCTGAGGTGTGCCCTGGTCTGTCC < 41bp 0.497415044793118 0.706405434721818 NA NA prediction 0.412810869443636 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122676112 chr12:122676111 synonymous SNV . 0 20 hm7G_associated_SNPs_31776 0 0 0 0 1 LRRC43 chr12:122676114 5'GT 122676114 Upstream 4bp 29166 chr9 116750605 116750605 1 + C T STAD 116750606 + 116750586 116750626 41 TTTCTTCTTTCCCAGGGAGCGCTTGAAGCGCAGCCAGAAGA TTTCTTCTTTCCCAGGGAGTGCTTGAAGCGCAGCCAGAAGA < 41bp 0.525416830761121 0.731820782183174 NA NA prediction 0.412807902844106 Functional Gain - ZNF618 ENSG00000157657 CDS Human protein_coding chr9:116750606 chr9:116750605 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_31777 0 0 1 0 1 ZNF618 chr9:116750601 3'AG 116750601 Downstream 5bp 29167 chr20 61595621 61595621 1 + G A STAD 61595622 + 61595602 61595642 41 CTTGGTTGGTGGCGATTCCGGCCAGTCTATTCAGCGGGTTT CTTGGTTGGTGGCGATTCCAGCCAGTCTATTCAGCGGGTTT < 41bp 0.540160570621349 0.746564405835719 NA NA prediction 0.412807670428741 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61595622 chr20:61595621 synonymous SNV . 0 20 hm7G_associated_SNPs_31778 0 0 1 0 1 SLC17A9 chr20:61595580 3'AG 61595580 Downstream 42bp 29168 chrX 10035455 10035455 1 + C T UCEC 10035456 + 10035436 10035476 41 CTACCAGATTAAGCAGCAGCGGTTCGAGCTGGCCCAGGAGG CTACCAGATTAAGCAGCAGTGGTTCGAGCTGGCCCAGGAGG < 41bp 0.505855996850466 0.712257885954115 NA NA prediction 0.412803778207298 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10035456 chrX:10035455 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_31781 0 0 0 0 1 WWC3 chrX:10035530 5'GT 10035530 Upstream 76bp 29169 chr6 34499510 34499510 1 + C T UCEC 34499511 + 34499491 34499531 41 CTCCAAGGGAGTGCGCGTGCGGGCACTCTACGACTATGACG CTCCAAGGGAGTGCGCGTGTGGGCACTCTACGACTATGACG < 41bp 0.511771351631877 0.718170870181027 NA NA prediction 0.412799037098301 Functional Gain - PACSIN1 ENSG00000124507 CDS Human protein_coding chr6:34499511 chr6:34499510 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31782 0 0 0 0 1 PACSIN1 chr6:34499564 5'GT 34499564 Upstream 55bp 29170 chr10 135025348 135025348 1 + G A HNSC 135025349 + 135025329 135025369 41 TAAGAGGCTCTCAGAGGACGGCATCTCCAGGAAGGTGGGGT TAAGAGGCTCTCAGAGGACAGCATCTCCAGGAAGGTGGGGT < 41bp 0.491754587194521 0.706399238384085 NA NA prediction 0.41279847676817 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135025349 chr10:135025348 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_31783 0 0 0 0 1 KNDC1 chr10:135025362 5'GT 135025362 Upstream 15bp 29171 chr12 56662966 56662966 1 + G T UCEC 56662967 + 56662947 56662987 41 ATTTGAAAGCCCAGCTGGAGGTTGGCTTTCCACCTGTCATG ATTTGAAAGCCCAGCTGGATGTTGGCTTTCCACCTGTCATG < 41bp 0.359675961411497 0.706396217223275 NA NA prediction 0.41279243444655 Functional Gain - COQ10A ENSG00000135469 CDS Human protein_coding chr12:56662967 chr12:56662966 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_31784 0 0 1 0 1 COQ10A chr12:56663035 5'GT 56663035 Upstream 70bp 29172 chr17 4725128 4725128 1 + C T UCEC 4725129 + 4725109 4725149 41 CCGGCCAGACTTGGATCTCCGAGACCCCATCTGTGATGACT CCGGCCAGACTTGGATCTCTGAGACCCCATCTGTGATGACT < 41bp 0.518089929688988 0.724485319098428 NA NA prediction 0.412790778818881 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4725129 chr17:4725128 stopgain 0.999 0 20 hm7G_associated_SNPs_31785 0 0 0 0 1 PLD2 chr17:4725202 5'GT 4725202 Upstream 75bp 29173 chr2 219294047 219294047 1 + G A LAML 219294048 + 219294028 219294068 41 GATCCGAGACCAGGAGCGGGGAGGGCGCACCTATGTAGGCG GATCCGAGACCAGGAGCGGAGAGGGCGCACCTATGTAGGCG < 41bp 0.538078737890373 0.744472740708333 NA NA prediction 0.412788005635921 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219294048 chr2:219294047 nonsynonymous SNV 0.404 4 20 hm7G_associated_SNPs_31786 0 0 1 0 1 VIL1 chr2:219294008 3'AG 219294008 Downstream 40bp 29174 chr4 128813553 128813553 1 + G T UCEC 128813554 + 128813534 128813574 41 AAATATCAATATGCTTCCAGGTTTGTACAGCTTGTAAGATC AAATATCAATATGCTTCCATGTTTGTACAGCTTGTAAGATC < 41bp 0.394471894241165 0.706393426020253 NA NA prediction 0.412786852040506 Functional Gain - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128813554 chr4:128813553 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_31788 0 0 1 0 1 PLK4 chr4:128813520 3'AG 128813520 Downstream 34bp 29175 chr19 3148603 3148603 1 + G A COAD 3148604 + 3148584 3148624 41 CCCAGGCCCAGGCGAGAGCGGGAAGAGCACCTTCATCAAGC CCCAGGCCCAGGCGAGAGCAGGAAGAGCACCTTCATCAAGC < 41bp 0.586299401825089 0.792691720825929 NA NA prediction 0.412784638001679 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3148604 chr19:3148603 nonsynonymous SNV 0.787 5 20 hm7G_associated_SNPs_31789 0 0 0 0 1 GNA15 chr19:3148589 3'AG 3148589 Downstream 15bp 29176 chrX 10090717 10090717 1 + C T COAD 10090718 + 10090698 10090738 41 GGAGGGCACGCCGCATCTCCGCATGTCTGTCGGATTATTCG GGAGGGCACGCCGCATCTCTGCATGTCTGTCGGATTATTCG < 41bp 0.495910780785982 0.70639231477285 NA NA prediction 0.4127846295457 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10090718 chrX:10090717 synonymous SNV . 0 20 hm7G_associated_SNPs_31790 0 0 0 0 2 WWC3 chrX:10090659 3'AG 10090659 Downstream 59bp 29177 chrX 10090717 10090717 1 + C T COAD 10090718 + 10090698 10090738 41 GGAGGGCACGCCGCATCTCCGCATGTCTGTCGGATTATTCG GGAGGGCACGCCGCATCTCTGCATGTCTGTCGGATTATTCG < 41bp 0.495910780785982 0.70639231477285 NA NA prediction 0.4127846295457 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10090718 chrX:10090717 synonymous SNV . 0 20 hm7G_associated_SNPs_31790 0 0 0 0 2 WWC3 chrX:10090779 5'GT 10090779 Upstream 63bp 29178 chr11 117153552 117153552 1 + G T GBM 117153553 + 117153533 117153573 41 TGCCCAAGTTTCATATCCTGGAAGGTCTTCACATGTAAGAC TGCCCAAGTTTCATATCCTTGAAGGTCTTCACATGTAAGAC < 41bp 0.365988500715326 0.70638975219185 NA NA prediction 0.412779504383699 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117153553 chr11:117153552 stopgain 1.000 1 20 hm7G_associated_SNPs_31791 0 0 1 0 2 RNF214 chr11:117153462 3'AG 117153462 Downstream 91bp 29179 chr11 117153552 117153552 1 + G T GBM 117153553 + 117153533 117153573 41 TGCCCAAGTTTCATATCCTGGAAGGTCTTCACATGTAAGAC TGCCCAAGTTTCATATCCTTGAAGGTCTTCACATGTAAGAC < 41bp 0.365988500715326 0.70638975219185 NA NA prediction 0.412779504383699 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117153553 chr11:117153552 stopgain 1.000 1 20 hm7G_associated_SNPs_31791 0 0 1 0 2 RNF214 chr11:117153566 5'GT 117153566 Upstream 15bp 29180 chr18 61652356 61652356 1 + G T OV 61652357 + 61652337 61652377 41 CAGTGCAGATGATGTTTAAGGAAGCTAAGTTTAAAATGGGG CAGTGCAGATGATGTTTAATGAAGCTAAGTTTAAAATGGGG < 41bp 0.374675495906477 0.706387660036216 NA NA prediction 0.412775320072432 Functional Gain - SERPINB8 ENSG00000166401 CDS Human protein_coding chr18:61652357 chr18:61652356 nonsynonymous SNV 0.908 2 20 hm7G_associated_SNPs_31793 0 0 0 0 1 SERPINB8 chr18:61652327 3'AG 61652327 Downstream 30bp 29181 chr4 15063846 15063846 1 + C T GBM 15063847 + 15063827 15063867 41 TATTGCTGCCATTAGTGCTCGGTTTGTTCAGCTTCAGCATG TATTGCTGCCATTAGTGCTTGGTTTGTTCAGCTTCAGCATG < 41bp 0.508357949471458 0.714742416678777 NA NA prediction 0.412768934414639 Functional Gain - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15063847 chr4:15063846 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_31795 0 0 1 0 1 CPEB2 chr4:15063884 5'GT 15063884 Upstream 39bp 29182 chrX 106084103 106084103 1 + G T UCEC 106084104 + 106084084 106084124 41 ATACAGGAATCCCAAAATTGGATACTGCCAGGTATGACTTA ATACAGGAATCCCAAAATTTGATACTGCCAGGTATGACTTA < 41bp 0.37785385256251 0.706384168886617 NA NA prediction 0.412768337773235 Functional Gain - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106084104 chrX:106084103 stopgain 1.000 1 20 hm7G_associated_SNPs_31796 0 0 1 0 1 TBC1D8B chrX:106084114 5'GT 106084114 Upstream 12bp 29183 chr16 31382406 31382406 1 + G A PRAD 31382407 + 31382387 31382427 41 CTTCTCTCCTCTGGCCAGCGGATCGCGGGCTCCCAGCTCTC CTTCTCTCCTCTGGCCAGCAGATCGCGGGCTCCCAGCTCTC < 41bp 0.494839792566759 0.706384095497838 NA NA prediction 0.412768190995677 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31382407 chr16:31382406 nonsynonymous SNV 0.030 2 20 hm7G_associated_SNPs_31797 0 0 0 0 1 ITGAX chr16:31382405 3'AG 31382405 Downstream 2bp 29184 chr4 57340270 57340270 1 + C T LGG 57340271 + 57340251 57340291 41 TAGCAGTGTATAGAGATCTCGTCCGAAACTCCCAAGATGAT TAGCAGTGTATAGAGATCTTGTCCGAAACTCCCAAGATGAT < 41bp 0.502938068376684 0.709321515463092 NA NA prediction 0.412766894172815 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340271 chr4:57340270 synonymous SNV . 0 20 hm7G_associated_SNPs_31798 0 0 1 0 2 SRP72 chr4:57340220 3'AG 57340220 Downstream 51bp 29185 chr4 57340270 57340270 1 + C T LGG 57340271 + 57340251 57340291 41 TAGCAGTGTATAGAGATCTCGTCCGAAACTCCCAAGATGAT TAGCAGTGTATAGAGATCTTGTCCGAAACTCCCAAGATGAT < 41bp 0.502938068376684 0.709321515463092 NA NA prediction 0.412766894172815 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57340271 chr4:57340270 synonymous SNV . 0 20 hm7G_associated_SNPs_31798 0 0 1 0 2 SRP72 chr4:57340363 5'GT 57340363 Upstream 94bp 29186 chr16 3551077 3551077 1 + C T COAD 3551078 + 3551058 3551098 41 CCTGAGCGTTATGTCTTTCCGCGACCTCCGCAGTAAGGCAG CCTGAGCGTTATGTCTTTCTGCGACCTCCGCAGTAAGGCAG < 41bp 0.518014055996632 0.724395800419904 NA NA prediction 0.412763488846543 Functional Gain - CLUAP1 ENSG00000103351 CDS Human protein_coding chr16:3551078 chr16:3551077 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31799 0 0 1 0 1 CLUAP1 chr16:3551089 5'GT 3551089 Upstream 13bp 29187 chr22 20128505 20128505 1 + C T UCEC 20128506 + 20128486 20128526 41 AGGTCAAGCTTAGTGACAACGGGCTGAAGGCTGGCCTGGGC AGGTCAAGCTTAGTGACAATGGGCTGAAGGCTGGCCTGGGC < 41bp 0.508924854960037 0.715306589839167 NA NA prediction 0.412763469758259 Functional Gain - ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20128506 chr22:20128505 synonymous SNV . 0 20 hm7G_associated_SNPs_31800 0 0 1 0 1 ZDHHC8 chr22:20128535 5'GT 20128535 Upstream 31bp 29188 chr3 126733390 126733390 1 + C T UCEC 126733391 + 126733371 126733411 41 AGGCGAGAACCTGGGCCTGCGATTCGAAGACGTGCGTCTGG AGGCGAGAACCTGGGCCTGTGATTCGAAGACGTGCGTCTGG < 41bp 0.503523460303093 0.709904561642763 NA NA prediction 0.41276220267934 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126733391 chr3:126733390 stopgain 0.927 0 20 hm7G_associated_SNPs_31801 0 0 1 0 2 PLXNA1 chr3:126733321 3'AG 126733321 Downstream 70bp 29189 chr3 126733390 126733390 1 + C T UCEC 126733391 + 126733371 126733411 41 AGGCGAGAACCTGGGCCTGCGATTCGAAGACGTGCGTCTGG AGGCGAGAACCTGGGCCTGTGATTCGAAGACGTGCGTCTGG < 41bp 0.503523460303093 0.709904561642763 NA NA prediction 0.41276220267934 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126733391 chr3:126733390 stopgain 0.927 0 20 hm7G_associated_SNPs_31801 0 0 1 0 2 PLXNA1 chr3:126733472 5'GT 126733472 Upstream 83bp 29190 chr20 4158194 4158194 1 + G A UCEC 4158195 + 4158175 4158215 41 GCAGGATCCCCAAGGACGTGGTTGAGGAATTCAGCGATTTA GCAGGATCCCCAAGGACGTAGTTGAGGAATTCAGCGATTTA < 41bp 0.524873144407965 0.731253742690552 NA NA prediction 0.412761196565173 Functional Gain - SMOX ENSG00000088826 CDS Human protein_coding chr20:4158195 chr20:4158194 synonymous SNV . 0 20 hm7G_associated_SNPs_31802 0 0 0 0 1 SMOX chr20:4158224 5'GT 4158224 Upstream 31bp 29191 chr17 40844682 40844682 1 + G A STAD 40844683 + 40844663 40844703 41 CACCGGCCCTGGGTTCTGCGGCCTATGCCACTGCAGACCTA CACCGGCCCTGGGTTCTGCAGCCTATGCCACTGCAGACCTA < 41bp 0.485698136912774 0.706380012948866 NA NA prediction 0.412760025897731 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40844683 chr17:40844682 nonsynonymous SNV 0.986 2 20 hm7G_associated_SNPs_31803 0 0 0 0 1 CNTNAP1 chr17:40844738 5'GT 40844738 Upstream 57bp 29192 chr17 18284821 18284821 1 + G T UCEC 18284822 + 18284802 18284842 41 TCAAGCACCCGCAGGCTGAGGAGACTGAGAAGGAGTGAGTG TCAAGCACCCGCAGGCTGATGAGACTGAGAAGGAGTGAGTG < 41bp 0.700003800103124 0.906383247603604 NA NA prediction 0.41275889500096 Functional Gain - EVPLL ENSG00000214860 CDS Human protein_coding chr17:18284822 chr17:18284821 nonsynonymous SNV 0.912 0 20 hm7G_associated_SNPs_31804 0 0 0 0 1 EVPLL chr17:18284835 5'GT 18284835 Upstream 15bp 29193 chr11 65384776 65384776 1 + C T COAD 65384777 + 65384757 65384797 41 CAGTTCCACACCCCCGGTGCGCTGCAGCTCCCAGCACTCTG CAGTTCCACACCCCCGGTGTGCTGCAGCTCCCAGCACTCTG < 41bp 0.490658366558615 0.706378274334367 NA NA prediction 0.412756548668734 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65384777 chr11:65384776 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_31805 0 0 1 0 2 PCNX3 chr11:65384721 3'AG 65384721 Downstream 56bp 29194 chr11 65384776 65384776 1 + C T COAD 65384777 + 65384757 65384797 41 CAGTTCCACACCCCCGGTGCGCTGCAGCTCCCAGCACTCTG CAGTTCCACACCCCCGGTGTGCTGCAGCTCCCAGCACTCTG < 41bp 0.490658366558615 0.706378274334367 NA NA prediction 0.412756548668734 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65384777 chr11:65384776 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_31805 0 0 1 0 2 PCNX3 chr11:65384820 5'GT 65384820 Upstream 45bp 29195 chr16 81320958 81320958 1 + G A HNSC 81320959 + 81320939 81320979 41 TGGAGAGAGGACGACTGCTGGCCAGCGGAACCCCTGTTTGT TGGAGAGAGGACGACTGCTAGCCAGCGGAACCCCTGTTTGT < 41bp 0.533766103405121 0.740141539049277 NA NA prediction 0.412750871288312 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81320959 chr16:81320958 stopgain 0.849 1 20 hm7G_associated_SNPs_31806 0 0 0 0 2 BCO1 chr16:81320900 3'AG 81320900 Downstream 59bp 29196 chr16 81320958 81320958 1 + G A HNSC 81320959 + 81320939 81320979 41 TGGAGAGAGGACGACTGCTGGCCAGCGGAACCCCTGTTTGT TGGAGAGAGGACGACTGCTAGCCAGCGGAACCCCTGTTTGT < 41bp 0.533766103405121 0.740141539049277 NA NA prediction 0.412750871288312 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81320959 chr16:81320958 stopgain 0.849 1 20 hm7G_associated_SNPs_31806 0 0 0 0 2 BCO1 chr16:81321011 5'GT 81321011 Upstream 54bp 29197 chr16 31374258 31374258 1 + C T SKCM 31374259 + 31374239 31374279 41 CAGGCTCTGCCCTTCAGATCGGCTCCTACTTCGGGGCCTCC CAGGCTCTGCCCTTCAGATTGGCTCCTACTTCGGGGCCTCC < 41bp 0.491598642344571 0.706374694515001 NA NA prediction 0.412749389030002 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31374259 chr16:31374258 synonymous SNV . 0 20 hm7G_associated_SNPs_31807 0 0 0 0 1 ITGAX chr16:31374256 3'AG 31374256 Downstream 3bp 29198 chr1 111857976 111857976 1 + C T rs140252614 111857977 + 111857957 111857997 41 TGCGCCAGTATGAGTTTGACGGGCTGGACTTTGACTGGGAG TGCGCCAGTATGAGTTTGATGGGCTGGACTTTGACTGGGAG < 41bp 0.497650795450899 0.706371684259643 NA NA prediction 0.412743368519285 Functional Gain - CHIA ENSG00000134216 CDS Human protein_coding chr1:111857977 chr1:111857976 synonymous SNV . 0 20 hm7G_associated_SNPs_31810 0 0 0 0 2 CHIA chr1:111857892 3'AG 111857892 Downstream 85bp 29199 chr1 111857976 111857976 1 + C T rs140252614 111857977 + 111857957 111857997 41 TGCGCCAGTATGAGTTTGACGGGCTGGACTTTGACTGGGAG TGCGCCAGTATGAGTTTGATGGGCTGGACTTTGACTGGGAG < 41bp 0.497650795450899 0.706371684259643 NA NA prediction 0.412743368519285 Functional Gain - CHIA ENSG00000134216 CDS Human protein_coding chr1:111857977 chr1:111857976 synonymous SNV . 0 20 hm7G_associated_SNPs_31810 0 0 0 0 2 CHIA chr1:111858057 5'GT 111858057 Upstream 82bp 29200 chr20 43034729 43034729 1 + C T GBM 43034730 + 43034710 43034750 41 CAGAAGGCACCAACCTCAACGCGCCCAACAGCCTGGGTGTC CAGAAGGCACCAACCTCAATGCGCCCAACAGCCTGGGTGTC < 41bp 0.514637053581548 0.721008070187984 NA NA prediction 0.412742033212874 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034730 chr20:43034729 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_31812 0 0 1 0 1 HNF4A chr20:43034698 3'AG 43034698 Downstream 32bp 29201 chr10 6263667 6263667 1 + C T BLCA 6263668 + 6263648 6263688 41 CCCTGAGGAGTATGCGCTGCGGGAGCAGGACAAGTACTATT CCCTGAGGAGTATGCGCTGTGGGAGCAGGACAAGTACTATT < 41bp 0.499294179829617 0.706370241170202 NA NA prediction 0.412740482340404 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6263668 chr10:6263667 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31813 0 0 1 0 2 PFKFB3 chr10:6263604 3'AG 6263604 Downstream 64bp 29202 chr10 6263667 6263667 1 + C T BLCA 6263668 + 6263648 6263688 41 CCCTGAGGAGTATGCGCTGCGGGAGCAGGACAAGTACTATT CCCTGAGGAGTATGCGCTGTGGGAGCAGGACAAGTACTATT < 41bp 0.499294179829617 0.706370241170202 NA NA prediction 0.412740482340404 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6263668 chr10:6263667 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31813 0 0 1 0 2 PFKFB3 chr10:6263708 5'GT 6263708 Upstream 42bp 29203 chr3 183823950 183823950 1 + G A LUSC 183823951 + 183823931 183823971 41 TGTGCCTGTCCCTGATGGTGGGCAGCCTGCTGGAGACCATC TGTGCCTGTCCCTGATGGTAGGCAGCCTGCTGGAGACCATC < 41bp 0.572953231508528 0.77932326026735 NA NA prediction 0.412740057517645 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823951 chr3:183823950 synonymous SNV . 0 20 hm7G_associated_SNPs_31814 0 0 0 0 1 HTR3E chr3:183823916 3'AG 183823916 Downstream 35bp 29204 chr1 156841494 156841494 1 + G A GBM 156841495 + 156841475 156841515 41 AGGAAGAACGTGACGTGCTGGGCAGAGAACGATGTGGGCCG AGGAAGAACGTGACGTGCTAGGCAGAGAACGATGTGGGCCG < 41bp 0.483340097424775 0.706364915924121 NA NA prediction 0.412729831848241 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841495 chr1:156841494 stopgain 0.998 0 20 hm7G_associated_SNPs_31817 0 0 0 0 2 NTRK1 chr1:156841415 3'AG 156841415 Downstream 80bp 29205 chr1 156841494 156841494 1 + G A GBM 156841495 + 156841475 156841515 41 AGGAAGAACGTGACGTGCTGGGCAGAGAACGATGTGGGCCG AGGAAGAACGTGACGTGCTAGGCAGAGAACGATGTGGGCCG < 41bp 0.483340097424775 0.706364915924121 NA NA prediction 0.412729831848241 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156841495 chr1:156841494 stopgain 0.998 0 20 hm7G_associated_SNPs_31817 0 0 0 0 2 NTRK1 chr1:156841547 5'GT 156841547 Upstream 54bp 29206 chr12 56527641 56527641 1 + G A BLCA 56527642 + 56527622 56527662 41 TTAGTTGTCTACCTGGATCGGGCCCAGGATCTTCCTGTGAG TTAGTTGTCTACCTGGATCAGGCCCAGGATCTTCCTGTGAG < 41bp 0.506977811951039 0.713340704587907 NA NA prediction 0.412725785273737 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527642 chr12:56527641 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_31819 0 0 1 0 2 ESYT1 chr12:56527565 3'AG 56527565 Downstream 77bp 29207 chr12 56527641 56527641 1 + G A BLCA 56527642 + 56527622 56527662 41 TTAGTTGTCTACCTGGATCGGGCCCAGGATCTTCCTGTGAG TTAGTTGTCTACCTGGATCAGGCCCAGGATCTTCCTGTGAG < 41bp 0.506977811951039 0.713340704587907 NA NA prediction 0.412725785273737 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527642 chr12:56527641 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_31819 0 0 1 0 2 ESYT1 chr12:56527657 5'GT 56527657 Upstream 17bp 29208 chr22 23637301 23637301 1 + G A BLCA 23637302 + 23637282 23637322 41 GAAGATCCCCAAGGAGGACGGCGAGAGCACGGACAGACTCA GAAGATCCCCAAGGAGGACAGCGAGAGCACGGACAGACTCA < 41bp 0.53471830990658 0.741079650570192 NA NA prediction 0.412722681327224 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23637302 chr22:23637301 nonsynonymous SNV 0.690 2 20 hm7G_associated_SNPs_31822 0 0 1 0 2 BCR chr22:23637211 3'AG 23637211 Downstream 91bp 29209 chr22 23637301 23637301 1 + G A BLCA 23637302 + 23637282 23637322 41 GAAGATCCCCAAGGAGGACGGCGAGAGCACGGACAGACTCA GAAGATCCCCAAGGAGGACAGCGAGAGCACGGACAGACTCA < 41bp 0.53471830990658 0.741079650570192 NA NA prediction 0.412722681327224 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23637302 chr22:23637301 nonsynonymous SNV 0.690 2 20 hm7G_associated_SNPs_31822 0 0 1 0 2 BCR chr22:23637342 5'GT 23637342 Upstream 42bp 29210 chr19 17885262 17885262 1 + C T UCEC 17885263 + 17885243 17885283 41 AGGACTAAGCCGGCGGGAGCGGGAGCCAGAGCCACCTGCAG AGGACTAAGCCGGCGGGAGTGGGAGCCAGAGCCACCTGCAG < 41bp 0.518566124009622 0.724925555092046 NA NA prediction 0.412718862164847 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885263 chr19:17885262 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_31824 0 0 1 0 2 FCHO1 chr19:17885203 3'AG 17885203 Downstream 60bp 29211 chr19 17885262 17885262 1 + C T UCEC 17885263 + 17885243 17885283 41 AGGACTAAGCCGGCGGGAGCGGGAGCCAGAGCCACCTGCAG AGGACTAAGCCGGCGGGAGTGGGAGCCAGAGCCACCTGCAG < 41bp 0.518566124009622 0.724925555092046 NA NA prediction 0.412718862164847 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17885263 chr19:17885262 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_31824 0 0 1 0 2 FCHO1 chr19:17885287 5'GT 17885287 Upstream 26bp 29212 chr6 88775924 88775924 1 + G T LUSC 88775925 + 88775905 88775945 41 CAGTCAAGGCTTTCTGGGGGGCAAAAGCCTCTACACCTGAG CAGTCAAGGCTTTCTGGGGTGCAAAAGCCTCTACACCTGAG < 41bp 0.679749535035431 0.88610792261038 NA NA prediction 0.412716775149899 Functional Gain - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88775925 chr6:88775924 synonymous SNV . 0 20 hm7G_associated_SNPs_31825 0 0 0 0 1 SPACA1 chr6:88775900 3'AG 88775900 Downstream 25bp 29213 chr20 31607427 31607427 1 + G A SKCM 31607428 + 31607408 31607448 41 CCATGCCTGTGGTGCTCAAGGTGCGGCTGGGTGCCACACCT CCATGCCTGTGGTGCTCAAAGTGCGGCTGGGTGCCACACCT < 41bp 0.482028673582533 0.706357027656725 NA NA prediction 0.41271405531345 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31607428 chr20:31607427 synonymous SNV . 0 20 hm7G_associated_SNPs_31826 0 0 1 0 1 BPIFB2 chr20:31607386 3'AG 31607386 Downstream 42bp 29214 chr3 126710404 126710404 1 + C T CESC 126710405 + 126710385 126710425 41 CACGCGAAGTGGCCGCATCCGCAAGGTCAGGCCTGGGTGGG CACGCGAAGTGGCCGCATCTGCAAGGTCAGGCCTGGGTGGG < 41bp 0.525759932817726 0.732115730342433 NA NA prediction 0.412711595049415 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126710405 chr3:126710404 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_31827 0 0 0 0 1 PLXNA1 chr3:126710409 5'GT 126710409 Upstream 6bp 29215 chr1 161480678 161480678 1 + C T COAD 161480679 + 161480659 161480699 41 ATTGTGGCTGTGGTCATTGCGACTGCTGTAGCAGCCATTGT ATTGTGGCTGTGGTCATTGTGACTGCTGTAGCAGCCATTGT < 41bp 0.513652257935217 0.720007962374421 NA NA prediction 0.412711408878409 Functional Gain - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480679 chr1:161480678 stopgain 0.003 0 20 hm7G_associated_SNPs_31828 0 0 1 0 2 FCGR2A chr1:161480624 3'AG 161480624 Downstream 55bp 29216 chr1 161480678 161480678 1 + C T COAD 161480679 + 161480659 161480699 41 ATTGTGGCTGTGGTCATTGCGACTGCTGTAGCAGCCATTGT ATTGTGGCTGTGGTCATTGTGACTGCTGTAGCAGCCATTGT < 41bp 0.513652257935217 0.720007962374421 NA NA prediction 0.412711408878409 Functional Gain - FCGR2A ENSG00000143226 CDS Human protein_coding chr1:161480679 chr1:161480678 stopgain 0.003 0 20 hm7G_associated_SNPs_31828 0 0 1 0 2 FCGR2A chr1:161480746 5'GT 161480746 Upstream 69bp 29217 chr13 113732714 113732714 1 + C T UCEC 113732715 + 113732695 113732735 41 AGAACTCCAGCTCCGAGGGCGGTGCGCTCCGGAGAGGGCCC AGAACTCCAGCTCCGAGGGTGGTGCGCTCCGGAGAGGGCCC < 41bp 0.536052276693626 0.742406167925699 NA NA prediction 0.412707782464146 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732715 chr13:113732714 synonymous SNV . 0 20 hm7G_associated_SNPs_31829 0 0 1 0 2 MCF2L chr13:113732677 3'AG 113732677 Downstream 38bp 29218 chr13 113732714 113732714 1 + C T UCEC 113732715 + 113732695 113732735 41 AGAACTCCAGCTCCGAGGGCGGTGCGCTCCGGAGAGGGCCC AGAACTCCAGCTCCGAGGGTGGTGCGCTCCGGAGAGGGCCC < 41bp 0.536052276693626 0.742406167925699 NA NA prediction 0.412707782464146 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113732715 chr13:113732714 synonymous SNV . 0 20 hm7G_associated_SNPs_31829 0 0 1 0 2 MCF2L chr13:113732750 5'GT 113732750 Upstream 37bp 29219 chr20 30686919 30686919 1 + C T rs75084400 30686920 + 30686900 30686940 41 TGATGGAGATCGTCACCTACGGCCGGATCCCTTACCCAGGT TGATGGAGATCGTCACCTATGGCCGGATCCCTTACCCAGGT < 41bp 0.516271614951625 0.722621850344742 NA NA prediction 0.412700470786233 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30686920 chr20:30686919 synonymous SNV . 0 20 hm7G_associated_SNPs_31832 0 0 0 0 1 HCK chr20:30686938 5'GT 30686938 Upstream 20bp 29220 chr9 34971381 34971381 1 + G A COAD 34971382 + 34971362 34971402 41 GCTTTCAAGGATGGGCTGCGGGACAGGCCTTCCATCCGACG GCTTTCAAGGATGGGCTGCAGGACAGGCCTTCCATCCGACG < 41bp 0.556358835393529 0.762708622777935 NA NA prediction 0.412699574768813 Functional Gain - PHF24 ENSG00000122733 CDS Human protein_coding chr9:34971382 chr9:34971381 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31833 0 0 0 0 1 PHF24 chr9:34971292 3'AG 34971292 Downstream 90bp 29221 chr1 34666581 34666581 1 + C T STAD 34666582 + 34666562 34666602 41 GGGCCACCAAGAACCCAAGCGGGCAGCCGAGACTTCGAAAC GGGCCACCAAGAACCCAAGTGGGCAGCCGAGACTTCGAAAC < 41bp 0.512810411292498 0.719159298490552 NA NA prediction 0.412697774396106 Functional Gain - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34666582 chr1:34666581 synonymous SNV . 0 20 hm7G_associated_SNPs_31834 0 0 0 0 1 C1orf94 chr1:34666633 5'GT 34666633 Upstream 53bp 29222 chr9 2729545 2729545 1 + G A COAD 2729546 + 2729526 2729566 41 TTTTGGGATCATTCTCAACGGGATGCCCATTTCCATCCTCT TTTTGGGATCATTCTCAACAGGATGCCCATTTCCATCCTCT < 41bp 0.506260095660482 0.712608604945039 NA NA prediction 0.412697018569115 Functional Gain - KCNV2 ENSG00000168263 CDS Human protein_coding chr9:2729546 chr9:2729545 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_31835 0 0 0 0 1 KCNV2 chr9:2729446 3'AG 2729446 Downstream 100bp 29223 chr19 18775203 18775203 1 + G T LUAD 18775204 + 18775184 18775224 41 TGCTGACTATTAACAGAGAGGCCTTTCCTGCACACAAGGTC TGCTGACTATTAACAGAGATGCCTTTCCTGCACACAAGGTC < 41bp 0.348907537511757 0.706344911535173 NA NA prediction 0.412689823070346 Functional Gain - KLHL26 ENSG00000167487 CDS Human protein_coding chr19:18775204 chr19:18775203 nonsynonymous SNV 0.381 1 20 hm7G_associated_SNPs_31836 0 0 0 0 1 KLHL26 chr19:18775253 5'GT 18775253 Upstream 51bp 29224 chr19 7606252 7606252 1 + C T ESCA 7606253 + 7606233 7606273 41 CCTGCAGATCATCATGGTGCGGCTGCAGCGAGTCACCTTCC CCTGCAGATCATCATGGTGTGGCTGCAGCGAGTCACCTTCC < 41bp 0.51777495483478 0.724117632212562 NA NA prediction 0.412685354755563 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7606253 chr19:7606252 nonsynonymous SNV 0.949 3 20 hm7G_associated_SNPs_31837 0 0 1 0 2 PNPLA6 chr19:7606240 3'AG 7606240 Downstream 13bp 29225 chr19 7606252 7606252 1 + C T ESCA 7606253 + 7606233 7606273 41 CCTGCAGATCATCATGGTGCGGCTGCAGCGAGTCACCTTCC CCTGCAGATCATCATGGTGTGGCTGCAGCGAGTCACCTTCC < 41bp 0.51777495483478 0.724117632212562 NA NA prediction 0.412685354755563 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7606253 chr19:7606252 nonsynonymous SNV 0.949 3 20 hm7G_associated_SNPs_31837 0 0 1 0 2 PNPLA6 chr19:7606320 5'GT 7606320 Upstream 69bp 29226 chr11 113215128 113215128 1 + C T STAD 113215129 + 113215109 113215149 41 CGCCCAGACTGAGAGCGGACGGAGCCTGATCATCAACCACC CGCCCAGACTGAGAGCGGATGGAGCCTGATCATCAACCACC < 41bp 0.48849518981399 0.706341331528152 NA NA prediction 0.412682663056305 Functional Gain - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113215129 chr11:113215128 nonsynonymous SNV 0.134 3 20 hm7G_associated_SNPs_31839 0 0 0 0 1 TTC12 chr11:113215162 5'GT 113215162 Upstream 35bp 29227 chr20 30408279 30408279 1 + G A SKCM 30408280 + 30408260 30408300 41 GGGCAAGAAGGCAGCAGAGGGCCAAGCAGCAGCCAGGAGGG GGGCAAGAAGGCAGCAGAGAGCCAAGCAGCAGCCAGGAGGG < 41bp 0.470810073296076 0.706334973165929 NA NA prediction 0.412669946331858 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30408280 chr20:30408279 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_31841 1 0 0 0 1 MYLK2 chr20:30408349 5'GT 30408349 Upstream 71bp 29228 chr16 84488460 84488460 1 + G A SKCM 84488461 + 84488441 84488481 41 GGCGATCGTGGCCATGACTGGGGATGGGGTGAACGACGCAG GGCGATCGTGGCCATGACTAGGGATGGGGTGAACGACGCAG < 41bp 0.569219097001474 0.775553415798335 NA NA prediction 0.412668637593722 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84488461 chr16:84488460 nonsynonymous SNV 0.929 4 20 hm7G_associated_SNPs_31842 0 0 0 0 1 ATP2C2 chr16:84488424 3'AG 84488424 Downstream 37bp 29229 chr20 37187086 37187086 1 + C T UCEC 37187087 + 37187067 37187107 41 ATGAAGCCAGGTCAGAAAACGAACCAAGAGGTAAGAGTTAC ATGAAGCCAGGTCAGAAAATGAACCAAGAGGTAAGAGTTAC < 41bp 0.503461255531907 0.709789413178039 NA NA prediction 0.412656315292262 Functional Gain - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37187087 chr20:37187086 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_31844 0 0 0 0 1 RALGAPB chr20:37187096 5'GT 37187096 Upstream 11bp 29230 chr20 32378876 32378876 1 + G A BLCA 32378877 + 32378857 32378897 41 AGCATCAGCGCGCCCACACGGGCAACTACAAGTTCCGCTGT AGCATCAGCGCGCCCACACAGGCAACTACAAGTTCCGCTGT < 41bp 0.541521604008987 0.747847127933736 NA NA prediction 0.412651047849498 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32378877 chr20:32378876 synonymous SNV . 0 20 hm7G_associated_SNPs_31845 0 0 1 0 1 ZNF341 chr20:32378794 3'AG 32378794 Downstream 83bp 29231 chr1 43785145 43785145 1 + C T STAD 43785146 + 43785126 43785166 41 CTAGGGGCGTCTCCCTGTGCGCTGGATGGCCATTGAGTCCC CTAGGGGCGTCTCCCTGTGTGCTGGATGGCCATTGAGTCCC < 41bp 0.512461080018508 0.71878564845981 NA NA prediction 0.412649136882603 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43785146 chr1:43785145 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_31846 0 0 0 0 2 TIE1 chr1:43785130 3'AG 43785130 Downstream 16bp 29232 chr1 43785145 43785145 1 + C T STAD 43785146 + 43785126 43785166 41 CTAGGGGCGTCTCCCTGTGCGCTGGATGGCCATTGAGTCCC CTAGGGGCGTCTCCCTGTGTGCTGGATGGCCATTGAGTCCC < 41bp 0.512461080018508 0.71878564845981 NA NA prediction 0.412649136882603 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43785146 chr1:43785145 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_31846 0 0 0 0 2 TIE1 chr1:43785200 5'GT 43785200 Upstream 56bp 29233 chr16 11016066 11016066 1 + G A READ 11016067 + 11016047 11016087 41 ACGTGGGAGCCGAGAGCTTGGCTCGTGTGCTTCCGGACATG ACGTGGGAGCCGAGAGCTTAGCTCGTGTGCTTCCGGACATG < 41bp 0.476897913353294 0.706324189385161 NA NA prediction 0.412648378770321 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11016067 chr16:11016066 synonymous SNV . 0 20 hm7G_associated_SNPs_31847 0 0 0 0 2 CIITA chr16:11016024 3'AG 11016024 Downstream 43bp 29234 chr16 11016066 11016066 1 + G A READ 11016067 + 11016047 11016087 41 ACGTGGGAGCCGAGAGCTTGGCTCGTGTGCTTCCGGACATG ACGTGGGAGCCGAGAGCTTAGCTCGTGTGCTTCCGGACATG < 41bp 0.476897913353294 0.706324189385161 NA NA prediction 0.412648378770321 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11016067 chr16:11016066 synonymous SNV . 0 20 hm7G_associated_SNPs_31847 0 0 0 0 2 CIITA chr16:11016107 5'GT 11016107 Upstream 42bp 29235 chr3 11078619 11078619 1 + G A SKCM 11078620 + 11078600 11078640 41 GTCCTGAGCAGCCCCAGGCGGGCAGCTCCACCAGCAAGGAG GTCCTGAGCAGCCCCAGGCAGGCAGCTCCACCAGCAAGGAG < 41bp 0.50087637634546 0.707198278279504 NA NA prediction 0.412643803868088 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11078620 chr3:11078619 synonymous SNV . 0 20 hm7G_associated_SNPs_31848 0 0 0 0 1 SLC6A1 chr3:11078548 3'AG 11078548 Downstream 72bp 29236 chr15 81181834 81181834 1 + C T SKCM 81181835 + 81181815 81181855 41 TGGAGTGGACGGAGTGGTTCGATCATGATAAAGTATCTCAG TGGAGTGGACGGAGTGGTTTGATCATGATAAAGTATCTCAG < 41bp 0.513511378940179 0.719832235064519 NA NA prediction 0.41264171224868 Functional Gain - CEMIP ENSG00000103888 CDS Human protein_coding chr15:81181835 chr15:81181834 synonymous SNV . 0 20 hm7G_associated_SNPs_31850 0 0 1 0 2 CEMIP chr15:81181812 3'AG 81181812 Downstream 23bp 29237 chr15 81181834 81181834 1 + C T SKCM 81181835 + 81181815 81181855 41 TGGAGTGGACGGAGTGGTTCGATCATGATAAAGTATCTCAG TGGAGTGGACGGAGTGGTTTGATCATGATAAAGTATCTCAG < 41bp 0.513511378940179 0.719832235064519 NA NA prediction 0.41264171224868 Functional Gain - CEMIP ENSG00000103888 CDS Human protein_coding chr15:81181835 chr15:81181834 synonymous SNV . 0 20 hm7G_associated_SNPs_31850 0 0 1 0 2 CEMIP chr15:81181933 5'GT 81181933 Upstream 100bp 29238 chr10 121685579 121685579 1 + C T rs150192084 121685580 + 121685560 121685600 41 TCAGAAAAGAAGGCAGTGGCGGCCACTTCTACAAAAGGACA TCAGAAAAGAAGGCAGTGGTGGCCACTTCTACAAAAGGACA < 41bp 0.495560564826596 0.706320466673589 NA NA prediction 0.412640933347177 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121685580 chr10:121685579 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_31851 0 0 1 0 1 SEC23IP chr10:121685548 3'AG 121685548 Downstream 32bp 29239 chr1 198711060 198711060 1 + C T UCEC 198711061 + 198711041 198711081 41 TCACCAGCTGGCCAGACCACGGGGTGCCTGAGGATCCTCAC TCACCAGCTGGCCAGACCATGGGGTGCCTGAGGATCCTCAC < 41bp 0.511701941973609 0.718018218833306 NA NA prediction 0.412632553719393 Functional Gain - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198711061 chr1:198711060 synonymous SNV . 0 20 hm7G_associated_SNPs_31854 0 0 1 0 2 PTPRC chr1:198710998 3'AG 198710998 Downstream 63bp 29240 chr1 198711060 198711060 1 + C T UCEC 198711061 + 198711041 198711081 41 TCACCAGCTGGCCAGACCACGGGGTGCCTGAGGATCCTCAC TCACCAGCTGGCCAGACCATGGGGTGCCTGAGGATCCTCAC < 41bp 0.511701941973609 0.718018218833306 NA NA prediction 0.412632553719393 Functional Gain - PTPRC ENSG00000081237 CDS Human protein_coding chr1:198711061 chr1:198711060 synonymous SNV . 0 20 hm7G_associated_SNPs_31854 0 0 1 0 2 PTPRC chr1:198711155 5'GT 198711155 Upstream 96bp 29241 chr1 147087695 147087695 1 + C T COAD 147087696 + 147087676 147087716 41 AAGACAGAGAGAAGCACAGCGCCTCTGGTATGTTGTTTCAG AAGACAGAGAGAAGCACAGTGCCTCTGGTATGTTGTTTCAG < 41bp 0.504276232718344 0.710591808195128 NA NA prediction 0.412631150953568 Functional Gain - BCL9 ENSG00000116128 CDS Human protein_coding chr1:147087696 chr1:147087695 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_31855 0 0 0 0 2 BCL9 chr1:147087603 3'AG 147087603 Downstream 93bp 29242 chr1 147087695 147087695 1 + C T COAD 147087696 + 147087676 147087716 41 AAGACAGAGAGAAGCACAGCGCCTCTGGTATGTTGTTTCAG AAGACAGAGAGAAGCACAGTGCCTCTGGTATGTTGTTTCAG < 41bp 0.504276232718344 0.710591808195128 NA NA prediction 0.412631150953568 Functional Gain - BCL9 ENSG00000116128 CDS Human protein_coding chr1:147087696 chr1:147087695 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_31855 0 0 0 0 2 BCL9 chr1:147087702 5'GT 147087702 Upstream 8bp 29243 chr3 121980461 121980461 1 + G A HNSC 121980462 + 121980442 121980482 41 TCCCCAATGATGAGCACCAGGCCACTGCCATGGCAGACATC TCCCCAATGATGAGCACCAAGCCACTGCCATGGCAGACATC < 41bp 0.553158759901409 0.759474280810815 NA NA prediction 0.412631041818813 Functional Gain - CASR ENSG00000036828 CDS Human protein_coding chr3:121980462 chr3:121980461 synonymous SNV . 0 20 hm7G_associated_SNPs_31856 0 0 0 0 1 CASR chr3:121980375 3'AG 121980375 Downstream 87bp 29244 chr1 17690103 17690103 1 + G A SKCM 17690104 + 17690084 17690124 41 GCTGCTGCCTGGAGGAGAAGGTGTGTTCCCTGCTGGAGCCA GCTGCTGCCTGGAGGAGAAAGTGTGTTCCCTGCTGGAGCCA < 41bp 0.493237723462757 0.706313888871825 NA NA prediction 0.41262777774365 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17690104 chr1:17690103 synonymous SNV . 0 20 hm7G_associated_SNPs_31858 0 0 0 0 1 PADI4 chr1:17690017 3'AG 17690017 Downstream 87bp 29245 chr16 1815050 1815050 1 + C T UCEC 1815051 + 1815031 1815071 41 AATGGACGCCACCTCCAGCCGGGTGTGGATCCTGACCAGCA AATGGACGCCACCTCCAGCTGGGTGTGGATCCTGACCAGCA < 41bp 0.539594885138043 0.74590666006821 NA NA prediction 0.412623549860335 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1815051 chr16:1815050 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_31859 0 0 1 0 1 MAPK8IP3 chr16:1815014 3'AG 1815014 Downstream 37bp 29246 chr17 43323674 43323674 1 + G T UCEC 43323675 + 43323655 43323695 41 TATGAGAGCGACCGTGATGGGGCCATTGAAGACATCATCAC TATGAGAGCGACCGTGATGTGGCCATTGAAGACATCATCAC < 41bp 0.361568222767281 0.706310174239239 NA NA prediction 0.412620348478479 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323675 chr17:43323674 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_31860 0 0 0 0 2 FMNL1 chr17:43323577 3'AG 43323577 Downstream 98bp 29247 chr17 43323674 43323674 1 + G T UCEC 43323675 + 43323655 43323695 41 TATGAGAGCGACCGTGATGGGGCCATTGAAGACATCATCAC TATGAGAGCGACCGTGATGTGGCCATTGAAGACATCATCAC < 41bp 0.361568222767281 0.706310174239239 NA NA prediction 0.412620348478479 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43323675 chr17:43323674 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_31860 0 0 0 0 2 FMNL1 chr17:43323697 5'GT 43323697 Upstream 24bp 29248 chr1 153655898 153655898 1 + C T UCEC 153655899 + 153655879 153655919 41 CAAGAGCTGGTGGCTGTGTCGGGGCGCAAACTGAACTGGCC CAAGAGCTGGTGGCTGTGTTGGGGCGCAAACTGAACTGGCC < 41bp 0.523360616850179 0.729668374377974 NA NA prediction 0.412615515055589 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153655899 chr1:153655898 nonsynonymous SNV 0.333 0 20 hm7G_associated_SNPs_31863 0 0 0 0 2 NPR1 chr1:153655852 3'AG 153655852 Downstream 47bp 29249 chr1 153655898 153655898 1 + C T UCEC 153655899 + 153655879 153655919 41 CAAGAGCTGGTGGCTGTGTCGGGGCGCAAACTGAACTGGCC CAAGAGCTGGTGGCTGTGTTGGGGCGCAAACTGAACTGGCC < 41bp 0.523360616850179 0.729668374377974 NA NA prediction 0.412615515055589 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153655899 chr1:153655898 nonsynonymous SNV 0.333 0 20 hm7G_associated_SNPs_31863 0 0 0 0 2 NPR1 chr1:153655987 5'GT 153655987 Upstream 90bp 29250 chr1 39988099 39988099 1 + G A rs146607525 39988100 + 39988080 39988120 41 GTCCGCGGCTCCCACGGCCGGCAGGTCTGCCGTCGGCACGA GTCCGCGGCTCCCACGGCCAGCAGGTCTGCCGTCGGCACGA < 41bp 0.572453617917057 0.778761199359645 NA NA prediction 0.412615162885176 Functional Gain - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39988100 chr1:39988099 nonsynonymous SNV 0.086 3 20 hm7G_associated_SNPs_31864 0 0 0 0 2 BMP8A chr1:39988075 3'AG 39988075 Downstream 25bp 29251 chr1 39988099 39988099 1 + G A rs146607525 39988100 + 39988080 39988120 41 GTCCGCGGCTCCCACGGCCGGCAGGTCTGCCGTCGGCACGA GTCCGCGGCTCCCACGGCCAGCAGGTCTGCCGTCGGCACGA < 41bp 0.572453617917057 0.778761199359645 NA NA prediction 0.412615162885176 Functional Gain - BMP8A ENSG00000183682 CDS Human protein_coding chr1:39988100 chr1:39988099 nonsynonymous SNV 0.086 3 20 hm7G_associated_SNPs_31864 0 0 0 0 2 BMP8A chr1:39988154 5'GT 39988154 Upstream 56bp 29252 chr14 104645959 104645959 1 + G A rs536541710 104645960 + 104645940 104645980 41 CCCCAGTTGAGGTGGACCCGGAGCTGGAGCCCGAGTCGGCC CCCCAGTTGAGGTGGACCCAGAGCTGGAGCCCGAGTCGGCC < 41bp 0.517205152817141 0.723512706908189 NA NA prediction 0.412615108182096 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104645960 chr14:104645959 synonymous SNV . 0 20 hm7G_associated_SNPs_31865 0 0 0 0 1 KIF26A chr14:104645946 3'AG 104645946 Downstream 14bp 29253 chr21 43836630 43836630 1 + G A rs537036965 43836631 + 43836611 43836651 41 CCCACCACCAGAGGACGCTGGAGCAGCTGGCCAGAGCCATC CCCACCACCAGAGGACGCTAGAGCAGCTGGCCAGAGCCATC < 41bp 0.493013915784303 0.706304699396332 NA NA prediction 0.412609398792664 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43836631 chr21:43836630 synonymous SNV . 0 20 hm7G_associated_SNPs_31866 0 0 0 0 2 UBASH3A chr21:43836551 3'AG 43836551 Downstream 80bp 29254 chr21 43836630 43836630 1 + G A rs537036965 43836631 + 43836611 43836651 41 CCCACCACCAGAGGACGCTGGAGCAGCTGGCCAGAGCCATC CCCACCACCAGAGGACGCTAGAGCAGCTGGCCAGAGCCATC < 41bp 0.493013915784303 0.706304699396332 NA NA prediction 0.412609398792664 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43836631 chr21:43836630 synonymous SNV . 0 20 hm7G_associated_SNPs_31866 0 0 0 0 2 UBASH3A chr21:43836720 5'GT 43836720 Upstream 91bp 29255 chr8 143570761 143570761 1 + C T OV 143570762 + 143570742 143570782 41 ACCCCCGCCTCGCTCCCTGCGCACACCCTTGGAGATCGAGT ACCCCCGCCTCGCTCCCTGTGCACACCCTTGGAGATCGAGT < 41bp 0.525357239904871 0.731660680015574 NA NA prediction 0.412606880221407 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143570762 chr8:143570761 nonsynonymous SNV 0.877 2 20 hm7G_associated_SNPs_31867 0 0 0 0 2 ADGRB1 chr8:143570697 3'AG 143570697 Downstream 65bp 29256 chr8 143570761 143570761 1 + C T OV 143570762 + 143570742 143570782 41 ACCCCCGCCTCGCTCCCTGCGCACACCCTTGGAGATCGAGT ACCCCCGCCTCGCTCCCTGTGCACACCCTTGGAGATCGAGT < 41bp 0.525357239904871 0.731660680015574 NA NA prediction 0.412606880221407 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143570762 chr8:143570761 nonsynonymous SNV 0.877 2 20 hm7G_associated_SNPs_31867 0 0 0 0 2 ADGRB1 chr8:143570799 5'GT 143570799 Upstream 39bp 29257 chr7 148494941 148494941 1 + C T COAD 148494942 + 148494922 148494962 41 TTACAGATTTTATTAAAGTCGAAGCTATTGGTAGGTTTGCG TTACAGATTTTATTAAAGTTGAAGCTATTGGTAGGTTTGCG < 41bp 0.510934624631211 0.717233135608897 NA NA prediction 0.412597021955371 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148494942 chr7:148494941 nonsynonymous SNV 0.855 2 20 hm7G_associated_SNPs_31869 0 0 1 0 2 CUL1 chr7:148494904 3'AG 148494904 Downstream 38bp 29258 chr7 148494941 148494941 1 + C T COAD 148494942 + 148494922 148494962 41 TTACAGATTTTATTAAAGTCGAAGCTATTGGTAGGTTTGCG TTACAGATTTTATTAAAGTTGAAGCTATTGGTAGGTTTGCG < 41bp 0.510934624631211 0.717233135608897 NA NA prediction 0.412597021955371 Functional Gain - CUL1 ENSG00000055130 CDS Human protein_coding chr7:148494942 chr7:148494941 nonsynonymous SNV 0.855 2 20 hm7G_associated_SNPs_31869 0 0 1 0 2 CUL1 chr7:148494951 5'GT 148494951 Upstream 11bp 29259 chr11 60776306 60776306 1 + C T rs2074225 60776307 + 60776287 60776327 41 CACAAAGAGGACGCGGGCGCGGTGTGCTCAGGTCAGTGGGC CACAAAGAGGACGCGGGCGTGGTGTGCTCAGGTCAGTGGGC < 41bp 0.496751361504246 0.706297403428271 NA NA prediction 0.412594806856542 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60776307 chr11:60776306 nonsynonymous SNV 0.100 0 20 hm7G_associated_SNPs_31870 0 0 0 0 1 CD6 chr11:60776317 5'GT 60776317 Upstream 12bp 29260 chr17 28320276 28320276 1 + G T LUSC 28320277 + 28320257 28320297 41 TGGCCAACACACGGAAACAGGCTCTGCAGGAGCAATTCGAT TGGCCAACACACGGAAACATGCTCTGCAGGAGCAATTCGAT < 41bp 0.361691866806762 0.706294024372342 NA NA prediction 0.412588048744684 Functional Gain - EFCAB5 ENSG00000176927 CDS Human protein_coding chr17:28320277 chr17:28320276 nonsynonymous SNV 0.910 1 20 hm7G_associated_SNPs_31873 0 0 0 0 1 EFCAB5 chr17:28320339 5'GT 28320339 Upstream 64bp 29261 chr17 72345390 72345390 1 + G A rs78437913 72345391 + 72345371 72345411 41 AGCATCATCGCTGACCTGCGGGGCGAGATCCAGCGACTCAA AGCATCATCGCTGACCTGCAGGGCGAGATCCAGCGACTCAA < 41bp 0.561684097486103 0.767976262220744 NA NA prediction 0.412584329469283 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345391 chr17:72345390 nonsynonymous SNV 0.909 3 20 hm7G_associated_SNPs_31875 0 0 0 0 2 KIF19 chr17:72345323 3'AG 72345323 Downstream 68bp 29262 chr17 72345390 72345390 1 + G A rs78437913 72345391 + 72345371 72345411 41 AGCATCATCGCTGACCTGCGGGGCGAGATCCAGCGACTCAA AGCATCATCGCTGACCTGCAGGGCGAGATCCAGCGACTCAA < 41bp 0.561684097486103 0.767976262220744 NA NA prediction 0.412584329469283 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72345391 chr17:72345390 nonsynonymous SNV 0.909 3 20 hm7G_associated_SNPs_31875 0 0 0 0 2 KIF19 chr17:72345488 5'GT 72345488 Upstream 99bp 29263 chr5 149219636 149219636 1 + C T UCEC 149219637 + 149219617 149219657 41 GGGCCGTGTTCAGACAGAACGCCAAGCATCCGGCACGCCAG GGGCCGTGTTCAGACAGAATGCCAAGCATCCGGCACGCCAG < 41bp 0.497177381747269 0.706291450581197 NA NA prediction 0.412582901162394 Functional Gain - PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149219637 chr5:149219636 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_31877 0 0 0 0 2 PPARGC1B chr5:149219604 3'AG 149219604 Downstream 33bp 29264 chr5 149219636 149219636 1 + C T UCEC 149219637 + 149219617 149219657 41 GGGCCGTGTTCAGACAGAACGCCAAGCATCCGGCACGCCAG GGGCCGTGTTCAGACAGAATGCCAAGCATCCGGCACGCCAG < 41bp 0.497177381747269 0.706291450581197 NA NA prediction 0.412582901162394 Functional Gain - PPARGC1B ENSG00000155846 CDS Human protein_coding chr5:149219637 chr5:149219636 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_31877 0 0 0 0 2 PPARGC1B chr5:149219679 5'GT 149219679 Upstream 44bp 29265 chr3 127682210 127682210 1 + C T OV 127682211 + 127682191 127682231 41 ATGGGAAACTCTATGTCTGCGGGGGATTCCATGGAGCAGGT ATGGGAAACTCTATGTCTGTGGGGGATTCCATGGAGCAGGT < 41bp 0.513125522230502 0.719416008154186 NA NA prediction 0.412580971847369 Functional Gain - KBTBD12 ENSG00000187715 CDS Human protein_coding chr3:127682211 chr3:127682210 synonymous SNV . 0 20 hm7G_associated_SNPs_31879 0 0 0 0 1 KBTBD12 chr3:127682229 5'GT 127682229 Upstream 20bp 29266 chr12 109968427 109968427 1 + C T rs12679 109968428 + 109968408 109968448 41 TCTGGGATATTCTGGCCTCCGACTTCACACCGGATGAGAGA TCTGGGATATTCTGGCCTCTGACTTCACACCGGATGAGAGA < 41bp 0.512609693982704 0.718899824147445 NA NA prediction 0.412580260329482 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109968428 chr12:109968427 synonymous SNV . 0 20 hm7G_associated_SNPs_31880 0 0 0 0 2 UBE3B chr12:109968352 3'AG 109968352 Downstream 76bp 29267 chr12 109968427 109968427 1 + C T rs12679 109968428 + 109968408 109968448 41 TCTGGGATATTCTGGCCTCCGACTTCACACCGGATGAGAGA TCTGGGATATTCTGGCCTCTGACTTCACACCGGATGAGAGA < 41bp 0.512609693982704 0.718899824147445 NA NA prediction 0.412580260329482 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109968428 chr12:109968427 synonymous SNV . 0 20 hm7G_associated_SNPs_31880 0 0 0 0 2 UBE3B chr12:109968463 5'GT 109968463 Upstream 37bp 29268 chr10 115986982 115986982 1 + C T COAD 115986983 + 115986963 115987003 41 GTTCTGAGAATGGGACTGTCGATGTAGCTGATAAGCTAGTG GTTCTGAGAATGGGACTGTTGATGTAGCTGATAAGCTAGTG < 41bp 0.513867502506347 0.720156529894541 NA NA prediction 0.412578054776389 Functional Gain - TDRD1 ENSG00000095627 CDS Human protein_coding chr10:115986983 chr10:115986982 synonymous SNV . 0 20 hm7G_associated_SNPs_31881 0 0 0 0 1 TDRD1 chr10:115987058 5'GT 115987058 Upstream 77bp 29269 chr11 73366885 73366885 1 + G A UCEC 73366886 + 73366866 73366906 41 GTCCCTCCCAGGAGCCGCCGGGTTTGCTCCAAGGTCAGGTG GTCCCTCCCAGGAGCCGCCAGGTTTGCTCCAAGGTCAGGTG < 41bp 0.56975856992516 0.776046566381644 NA NA prediction 0.412575992912968 Functional Gain - PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73366886 chr11:73366885 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_31882 0 0 0 0 2 PLEKHB1 chr11:73366848 3'AG 73366848 Downstream 38bp 29270 chr11 73366885 73366885 1 + G A UCEC 73366886 + 73366866 73366906 41 GTCCCTCCCAGGAGCCGCCGGGTTTGCTCCAAGGTCAGGTG GTCCCTCCCAGGAGCCGCCAGGTTTGCTCCAAGGTCAGGTG < 41bp 0.56975856992516 0.776046566381644 NA NA prediction 0.412575992912968 Functional Gain - PLEKHB1 ENSG00000021300 CDS Human protein_coding chr11:73366886 chr11:73366885 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_31882 0 0 0 0 2 PLEKHB1 chr11:73366952 5'GT 73366952 Upstream 68bp 29271 chr1 46498365 46498365 1 + C T UCEC 46498366 + 46498346 46498386 41 GTGCATGGCCTGGTGCACACGGAGGTGGTAGAGCTGATCCT GTGCATGGCCTGGTGCACATGGAGGTGGTAGAGCTGATCCT < 41bp 0.487261259787985 0.706287844794167 NA NA prediction 0.412575689588334 Functional Gain - MAST2 ENSG00000086015 CDS Human protein_coding chr1:46498366 chr1:46498365 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_31883 0 0 1 0 2 MAST2 chr1:46498268 3'AG 46498268 Downstream 98bp 29272 chr1 46498365 46498365 1 + C T UCEC 46498366 + 46498346 46498386 41 GTGCATGGCCTGGTGCACACGGAGGTGGTAGAGCTGATCCT GTGCATGGCCTGGTGCACATGGAGGTGGTAGAGCTGATCCT < 41bp 0.487261259787985 0.706287844794167 NA NA prediction 0.412575689588334 Functional Gain - MAST2 ENSG00000086015 CDS Human protein_coding chr1:46498366 chr1:46498365 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_31883 0 0 1 0 2 MAST2 chr1:46498390 5'GT 46498390 Upstream 26bp 29273 chr7 813814 813814 1 + C T UCEC 813815 + 813795 813835 41 TCTGGGCGCTCACCAGCAGCGAGGTCCTGTCGGCAGAGCAG TCTGGGCGCTCACCAGCAGTGAGGTCCTGTCGGCAGAGCAG < 41bp 0.499955339532522 0.706284427878597 NA NA prediction 0.412568855757194 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:813815 chr7:813814 synonymous SNV . 0 20 hm7G_associated_SNPs_31884 0 0 1 0 1 DNAAF5 chr7:813835 5'GT 813835 Upstream 22bp 29274 chr1 40881993 40881993 1 + C T STAD 40881994 + 40881974 40882014 41 TCACTGTATGGATCCCAGACGCCTCAAATGCCTACTCAAGG TCACTGTATGGATCCCAGATGCCTCAAATGCCTACTCAAGG < 41bp 0.493565554829042 0.706280608270458 NA NA prediction 0.412561216540915 Functional Gain - SMAP2 ENSG00000084070 CDS Human protein_coding chr1:40881994 chr1:40881993 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_31885 0 0 1 0 1 SMAP2 chr1:40882013 5'GT 40882013 Upstream 21bp 29275 chr8 22428488 22428488 1 + G A rs34185625 22428489 + 22428469 22428509 41 AGGGACGCATCACGGGCACGGGGCGCCAAGGCATATTCCCT AGGGACGCATCACGGGCACAGGGCGCCAAGGCATATTCCCT < 41bp 0.489129915509232 0.706277411793741 NA NA prediction 0.412554823587481 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22428489 chr8:22428488 synonymous SNV . 0 20 hm7G_associated_SNPs_31886 0 0 0 0 1 SORBS3 chr8:22428423 3'AG 22428423 Downstream 66bp 29276 chr2 47083098 47083098 1 + G T UCEC 47083099 + 47083079 47083119 41 CCAATGATGAGCAGCTGCTGGGCTGAAGGGACTGGGGCCAT CCAATGATGAGCAGCTGCTTGGCTGAAGGGACTGGGGCCAT < 41bp 0.69686231598139 0.903138494721127 NA NA prediction 0.412552357479474 Functional Gain - LINC01119 ENSG00000239332 CDS Human lincRNA chr2:47083099 chr2:47083098 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_31887 0 0 0 0 2 LINC01119 chr2:47083062 3'AG 47083062 Downstream 37bp 29277 chr2 47083098 47083098 1 + G T UCEC 47083099 + 47083079 47083119 41 CCAATGATGAGCAGCTGCTGGGCTGAAGGGACTGGGGCCAT CCAATGATGAGCAGCTGCTTGGCTGAAGGGACTGGGGCCAT < 41bp 0.69686231598139 0.903138494721127 NA NA prediction 0.412552357479474 Functional Gain - LINC01119 ENSG00000239332 CDS Human lincRNA chr2:47083099 chr2:47083098 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_31887 0 0 0 0 2 LINC01119 chr2:47083129 5'GT 47083129 Upstream 32bp 29278 chr19 45448131 45448131 1 + G A COAD 45448132 + 45448112 45448152 41 GGTGAACAGGACCAGAGACGGGTGGCAATGGTTCTGGTGAG GGTGAACAGGACCAGAGACAGGTGGCAATGGTTCTGGTGAG < 41bp 0.498150098339437 0.706271098238461 NA NA prediction 0.412542196476922 Functional Gain - APOC4 ENSG00000224916;ENSG00000267467 CDS Human other chr19:45448132 chr19:45448131 nonsynonymous SNV 0.141 0 20 hm7G_associated_SNPs_31889 0 0 0 0 1 APOC4 chr19:45448147 5'GT 45448147 Upstream 17bp 29279 chr12 132395297 132395297 1 + C T KIRP 132395298 + 132395278 132395318 41 CGTACCCAAGCTCGGGGTCCGGCAGCAGCTCCAGCAGCAGC CGTACCCAAGCTCGGGGTCTGGCAGCAGCTCCAGCAGCAGC < 41bp 0.522963585864415 0.729233545835726 NA NA prediction 0.412539919942621 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132395298 chr12:132395297 synonymous SNV . 0 20 hm7G_associated_SNPs_31890 0 0 1 0 2 ULK1 chr12:132395257 3'AG 132395257 Downstream 41bp 29280 chr12 132395297 132395297 1 + C T KIRP 132395298 + 132395278 132395318 41 CGTACCCAAGCTCGGGGTCCGGCAGCAGCTCCAGCAGCAGC CGTACCCAAGCTCGGGGTCTGGCAGCAGCTCCAGCAGCAGC < 41bp 0.522963585864415 0.729233545835726 NA NA prediction 0.412539919942621 Functional Gain - ULK1 ENSG00000177169 CDS Human protein_coding chr12:132395298 chr12:132395297 synonymous SNV . 0 20 hm7G_associated_SNPs_31890 0 0 1 0 2 ULK1 chr12:132395345 5'GT 132395345 Upstream 49bp 29281 chr14 21961327 21961327 1 + C T UCEC 21961328 + 21961308 21961348 41 TGTGGAAAGTAGTCCTGAGCGGCCTATGAACAACAGCCCTG TGTGGAAAGTAGTCCTGAGTGGCCTATGAACAACAGCCCTG < 41bp 0.528951534647164 0.735220623412939 NA NA prediction 0.41253817753155 Functional Gain - TOX4 ENSG00000092203 CDS Human protein_coding chr14:21961328 chr14:21961327 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_31891 0 0 1 0 1 TOX4 chr14:21961416 5'GT 21961416 Upstream 90bp 29282 chr1 249211534 249211534 1 + C T SKCM 249211535 + 249211515 249211555 41 GGTCAGACCTCTCATCATCCGGATGAACTGCAATTTCCAGA GGTCAGACCTCTCATCATCTGGATGAACTGCAATTTCCAGA < 41bp 0.520994833080083 0.727261295892904 NA NA prediction 0.412532925625643 Functional Gain - PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249211535 chr1:249211534 nonsynonymous SNV 0.798 2 20 hm7G_associated_SNPs_31892 0 0 0 0 1 PGBD2 chr1:249211478 3'AG 249211478 Downstream 57bp 29283 chr17 47123690 47123690 1 + C T GBM 47123691 + 47123671 47123711 41 ACCAGACCCCTGATGAGAACGACCAGGTCATCGTGAAAATC ACCAGACCCCTGATGAGAATGACCAGGTCATCGTGAAAATC < 41bp 0.523214493935302 0.729478074794517 NA NA prediction 0.412527161718431 Functional Gain - IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47123691 chr17:47123690 synonymous SNV . 0 20 hm7G_associated_SNPs_31893 0 0 1 0 2 IGF2BP1 chr17:47123622 3'AG 47123622 Downstream 69bp 29284 chr17 47123690 47123690 1 + C T GBM 47123691 + 47123671 47123711 41 ACCAGACCCCTGATGAGAACGACCAGGTCATCGTGAAAATC ACCAGACCCCTGATGAGAATGACCAGGTCATCGTGAAAATC < 41bp 0.523214493935302 0.729478074794517 NA NA prediction 0.412527161718431 Functional Gain - IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47123691 chr17:47123690 synonymous SNV . 0 20 hm7G_associated_SNPs_31893 0 0 1 0 2 IGF2BP1 chr17:47123735 5'GT 47123735 Upstream 46bp 29285 chr17 1648489 1648489 1 + G A SKCM 1648490 + 1648470 1648510 41 TCTCCCCTGTGAGCGCCATGGAGCCCTTGGGCCGGCAGGTA TCTCCCCTGTGAGCGCCATAGAGCCCTTGGGCCGGCAGGTA < 41bp 0.488029236839297 0.706262937533275 NA NA prediction 0.412525875066551 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648490 chr17:1648489 nonsynonymous SNV 0.029 1 20 hm7G_associated_SNPs_31894 0 0 1 0 2 SERPINF2 chr17:1648469 3'AG 1648469 Downstream 21bp 29286 chr17 1648489 1648489 1 + G A SKCM 1648490 + 1648470 1648510 41 TCTCCCCTGTGAGCGCCATGGAGCCCTTGGGCCGGCAGGTA TCTCCCCTGTGAGCGCCATAGAGCCCTTGGGCCGGCAGGTA < 41bp 0.488029236839297 0.706262937533275 NA NA prediction 0.412525875066551 Functional Gain - SERPINF2 ENSG00000167711 CDS Human protein_coding chr17:1648490 chr17:1648489 nonsynonymous SNV 0.029 1 20 hm7G_associated_SNPs_31894 0 0 1 0 2 SERPINF2 chr17:1648507 5'GT 1648507 Upstream 19bp 29287 chr5 167849068 167849068 1 + C T HNSC 167849069 + 167849049 167849089 41 AGAACTGGAGGAAGCCACCCGGCAGGTGGCAACTCTGCACT AGAACTGGAGGAAGCCACCTGGCAGGTGGCAACTCTGCACT < 41bp 0.536470342197473 0.742731773350073 NA NA prediction 0.412522862305201 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167849069 chr5:167849068 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_31897 0 0 0 0 2 WWC1 chr5:167849013 3'AG 167849013 Downstream 56bp 29288 chr5 167849068 167849068 1 + C T HNSC 167849069 + 167849049 167849089 41 AGAACTGGAGGAAGCCACCCGGCAGGTGGCAACTCTGCACT AGAACTGGAGGAAGCCACCTGGCAGGTGGCAACTCTGCACT < 41bp 0.536470342197473 0.742731773350073 NA NA prediction 0.412522862305201 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167849069 chr5:167849068 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_31897 0 0 0 0 2 WWC1 chr5:167849102 5'GT 167849102 Upstream 35bp 29289 chr1 161789470 161789470 1 + C T SKCM 161789471 + 161789451 161789491 41 TGATAAAAAATCGAGAATCCGCTTGTCAGTCTCGCAAGAAG TGATAAAAAATCGAGAATCTGCTTGTCAGTCTCGCAAGAAG < 41bp 0.519663192860433 0.725923683807288 NA NA prediction 0.41252098189371 Functional Gain - ATF6 ENSG00000118217 CDS Human protein_coding chr1:161789471 chr1:161789470 synonymous SNV . 0 20 hm7G_associated_SNPs_31898 0 0 1 0 1 ATF6 chr1:161789423 3'AG 161789423 Downstream 48bp 29290 chr17 78172302 78172302 1 + G T UCEC 78172303 + 78172283 78172323 41 CAGATCAGCGTCATCGGCGGGAACCTCACGGGCATCTTCAT CAGATCAGCGTCATCGGCGTGAACCTCACGGGCATCTTCAT < 41bp 0.354853996111778 0.706260214703351 NA NA prediction 0.412520429406702 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172303 chr17:78172302 nonsynonymous SNV 0.211 4 20 hm7G_associated_SNPs_31899 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 89bp 29291 chr19 39668359 39668359 1 + C T COAD 39668360 + 39668340 39668380 41 TGGTGATTGAGATGGTGGACGGAGAGCCCCCCTACTTCAAC TGGTGATTGAGATGGTGGATGGAGAGCCCCCCTACTTCAAC < 41bp 0.534558176108717 0.740816962780471 NA NA prediction 0.412517573343507 Functional Gain - PAK4 ENSG00000130669 CDS Human protein_coding chr19:39668360 chr19:39668359 synonymous SNV . 0 20 hm7G_associated_SNPs_31901 0 0 1 0 2 PAK4 chr19:39668315 3'AG 39668315 Downstream 45bp 29292 chr19 39668359 39668359 1 + C T COAD 39668360 + 39668340 39668380 41 TGGTGATTGAGATGGTGGACGGAGAGCCCCCCTACTTCAAC TGGTGATTGAGATGGTGGATGGAGAGCCCCCCTACTTCAAC < 41bp 0.534558176108717 0.740816962780471 NA NA prediction 0.412517573343507 Functional Gain - PAK4 ENSG00000130669 CDS Human protein_coding chr19:39668360 chr19:39668359 synonymous SNV . 0 20 hm7G_associated_SNPs_31901 0 0 1 0 2 PAK4 chr19:39668449 5'GT 39668449 Upstream 91bp 29293 chr7 100771865 100771865 1 + C T COAD 100771866 + 100771846 100771886 41 TCACCCTATGGGGTGGCCTCGGTGTTGGCCATGCTCCAGCT TCACCCTATGGGGTGGCCTTGGTGTTGGCCATGCTCCAGCT < 41bp 0.515501301119752 0.721758646277375 NA NA prediction 0.412514690315246 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100771866 chr7:100771865 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_31903 1 0 1 0 2 SERPINE1 chr7:100771810 3'AG 100771810 Downstream 56bp 29294 chr7 100771865 100771865 1 + C T COAD 100771866 + 100771846 100771886 41 TCACCCTATGGGGTGGCCTCGGTGTTGGCCATGCTCCAGCT TCACCCTATGGGGTGGCCTTGGTGTTGGCCATGCTCCAGCT < 41bp 0.515501301119752 0.721758646277375 NA NA prediction 0.412514690315246 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100771866 chr7:100771865 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_31903 1 0 1 0 2 SERPINE1 chr7:100771945 5'GT 100771945 Upstream 81bp 29295 chr8 56864652 56864652 1 + C T GBM 56864653 + 56864633 56864673 41 TCACTTTTCCCTGTATCAGCGACATGATTAAACATTACCAA TCACTTTTCCCTGTATCAGTGACATGATTAAACATTACCAA < 41bp 0.50931399685659 0.715571302589445 NA NA prediction 0.41251461146571 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56864653 chr8:56864652 synonymous SNV . 0 20 hm7G_associated_SNPs_31904 0 0 1 0 1 LYN chr8:56864674 5'GT 56864674 Upstream 23bp 29296 chr1 35250366 35250366 1 + G A SKCM 35250367 + 35250347 35250387 41 GGCCCCCACCAGGCGCCATGGACTGGAAGACACTCCAGGCC GGCCCCCACCAGGCGCCATAGACTGGAAGACACTCCAGGCC < 41bp 0.537412951868671 0.743669718047492 NA NA prediction 0.412513532357643 Functional Gain - GJB3 ENSG00000188910 CDS Human antisense chr1:35250367 chr1:35250366 nonsynonymous SNV 0.986 5 20 hm7G_associated_SNPs_31906 0 0 0 0 1 GJB3 chr1:35250339 3'AG 35250339 Downstream 28bp 29297 chr1 159170683 159170683 1 + G T COAD 159170684 + 159170664 159170704 41 AGAAGGCGGGCAGTCAGGAGGGGACGACAAGAAGGAATATT AGAAGGCGGGCAGTCAGGATGGGACGACAAGAAGGAATATT < 41bp 0.693340944329875 0.899595123102183 NA NA prediction 0.412508357544614 Functional Gain - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159170684 chr1:159170683 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_31908 0 0 0 0 1 CADM3 chr1:159170594 3'AG 159170594 Downstream 90bp 29298 chr16 76461469 76461469 1 + C T LUSC 76461470 + 76461450 76461490 41 CAAGGGCAGAATTGGAATGCGAATCGAAGTGTTCGGATGTG CAAGGGCAGAATTGGAATGTGAATCGAAGTGTTCGGATGTG < 41bp 0.515916267666791 0.722169935143222 NA NA prediction 0.412507334952861 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76461470 chr16:76461469 stopgain 0.996 0 20 hm7G_associated_SNPs_31909 0 0 0 0 1 CNTNAP4 chr16:76461496 5'GT 76461496 Upstream 28bp 29299 chr14 105849775 105849775 1 + C T STAD 105849776 + 105849756 105849796 41 TTACCTCAGTGCCATCCTGCGGCTCTTTGTGGAGCAGCTGT TTACCTCAGTGCCATCCTGTGGCTCTTTGTGGAGCAGCTGT < 41bp 0.495549920404014 0.706251072859857 NA NA prediction 0.412502145719715 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105849776 chr14:105849775 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_31910 0 0 0 0 2 PACS2 chr14:105849696 3'AG 105849696 Downstream 80bp 29300 chr14 105849775 105849775 1 + C T STAD 105849776 + 105849756 105849796 41 TTACCTCAGTGCCATCCTGCGGCTCTTTGTGGAGCAGCTGT TTACCTCAGTGCCATCCTGTGGCTCTTTGTGGAGCAGCTGT < 41bp 0.495549920404014 0.706251072859857 NA NA prediction 0.412502145719715 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105849776 chr14:105849775 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_31910 0 0 0 0 2 PACS2 chr14:105849850 5'GT 105849850 Upstream 76bp 29301 chr9 131749134 131749134 1 + C T PAAD 131749135 + 131749115 131749155 41 CGATACTGAACCTGTGCCACGAGACAGACCTGCACAGCAGG CGATACTGAACCTGTGCCATGAGACAGACCTGCACAGCAGG < 41bp 0.518808193606008 0.725057143437911 NA NA prediction 0.412497899663806 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749135 chr9:131749134 synonymous SNV . 0 20 hm7G_associated_SNPs_31912 0 0 1 0 2 NUP188 chr9:131749088 3'AG 131749088 Downstream 47bp 29302 chr9 131749134 131749134 1 + C T PAAD 131749135 + 131749115 131749155 41 CGATACTGAACCTGTGCCACGAGACAGACCTGCACAGCAGG CGATACTGAACCTGTGCCATGAGACAGACCTGCACAGCAGG < 41bp 0.518808193606008 0.725057143437911 NA NA prediction 0.412497899663806 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131749135 chr9:131749134 synonymous SNV . 0 20 hm7G_associated_SNPs_31912 0 0 1 0 2 NUP188 chr9:131749154 5'GT 131749154 Upstream 21bp 29303 chr2 121736124 121736124 1 + C T COAD 121736125 + 121736105 121736145 41 CATGCTGGTGGTGCACATGCGGCGACACACGGGCGAGAAGC CATGCTGGTGGTGCACATGTGGCGACACACGGGCGAGAAGC < 41bp 0.517893204163383 0.724140355817021 NA NA prediction 0.412494303307274 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121736125 chr2:121736124 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_31913 0 0 0 0 1 GLI2 chr2:121736159 5'GT 121736159 Upstream 36bp 29304 chr2 108609517 108609517 1 + G T LUAD 108609518 + 108609498 108609538 41 CTATGGAAAACGCATGGGCGGACTCCTGTTTATTCCTGCAC CTATGGAAAACGCATGGGCTGACTCCTGTTTATTCCTGCAC < 41bp 0.369156204587728 0.706245948235729 NA NA prediction 0.412491896471457 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108609518 chr2:108609517 stopgain 0.971 1 20 hm7G_associated_SNPs_31914 0 0 0 0 2 SLC5A7 chr2:108609428 3'AG 108609428 Downstream 90bp 29305 chr2 108609517 108609517 1 + G T LUAD 108609518 + 108609498 108609538 41 CTATGGAAAACGCATGGGCGGACTCCTGTTTATTCCTGCAC CTATGGAAAACGCATGGGCTGACTCCTGTTTATTCCTGCAC < 41bp 0.369156204587728 0.706245948235729 NA NA prediction 0.412491896471457 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108609518 chr2:108609517 stopgain 0.971 1 20 hm7G_associated_SNPs_31914 0 0 0 0 2 SLC5A7 chr2:108609583 5'GT 108609583 Upstream 67bp 29306 chr19 2415766 2415766 1 + G A SKCM 2415767 + 2415747 2415787 41 GCAGGTCAGCCTGAAGGAAGGGTCCCGGCACTTCTGCGGAG GCAGGTCAGCCTGAAGGAAAGGTCCCGGCACTTCTGCGGAG < 41bp 0.590655894058858 0.796900346034435 NA NA prediction 0.412488903951154 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2415767 chr19:2415766 nonsynonymous SNV 0.168 3 20 hm7G_associated_SNPs_31915 0 0 0 0 2 TMPRSS9 chr19:2415668 3'AG 2415668 Downstream 99bp 29307 chr19 2415766 2415766 1 + G A SKCM 2415767 + 2415747 2415787 41 GCAGGTCAGCCTGAAGGAAGGGTCCCGGCACTTCTGCGGAG GCAGGTCAGCCTGAAGGAAAGGTCCCGGCACTTCTGCGGAG < 41bp 0.590655894058858 0.796900346034435 NA NA prediction 0.412488903951154 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2415767 chr19:2415766 nonsynonymous SNV 0.168 3 20 hm7G_associated_SNPs_31915 0 0 0 0 2 TMPRSS9 chr19:2415839 5'GT 2415839 Upstream 74bp 29308 chr10 102732900 102732900 1 + C T GBM 102732901 + 102732881 102732921 41 CCCAGAGCTCTCTGGGACCCGGCACTTCAAGGGCCAAGCCC CCCAGAGCTCTCTGGGACCTGGCACTTCAAGGGCCAAGCCC < 41bp 0.519195110502393 0.725437808286823 NA NA prediction 0.41248539556886 Functional Gain - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102732901 chr10:102732900 nonsynonymous SNV 0.579 3 20 hm7G_associated_SNPs_31916 0 0 1 0 1 SEMA4G chr10:102732886 3'AG 102732886 Downstream 15bp 29309 chr1 11884586 11884586 1 + G A rs60602304 11884587 + 11884567 11884607 41 CCATGATCCACAGTGGTTCGGTGGTGGGAGCTGGCCTCCCT CCATGATCCACAGTGGTTCAGTGGTGGGAGCTGGCCTCCCT < 41bp 0.496041783233845 0.706240124605615 NA NA prediction 0.412480249211231 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11884587 chr1:11884586 synonymous SNV . 0 20 hm7G_associated_SNPs_31917 0 0 1 0 2 CLCN6 chr1:11884543 3'AG 11884543 Downstream 44bp 29310 chr1 11884586 11884586 1 + G A rs60602304 11884587 + 11884567 11884607 41 CCATGATCCACAGTGGTTCGGTGGTGGGAGCTGGCCTCCCT CCATGATCCACAGTGGTTCAGTGGTGGGAGCTGGCCTCCCT < 41bp 0.496041783233845 0.706240124605615 NA NA prediction 0.412480249211231 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11884587 chr1:11884586 synonymous SNV . 0 20 hm7G_associated_SNPs_31917 0 0 1 0 2 CLCN6 chr1:11884610 5'GT 11884610 Upstream 25bp 29311 chr19 19359655 19359655 1 + G T LUSC 19359656 + 19359636 19359676 41 CATTCGATGCCGGAGCAATGGCAAGTGGGACAGGCCCCAAA CATTCGATGCCGGAGCAATTGCAAGTGGGACAGGCCCCAAA < 41bp 0.707221728444569 0.913461440614293 NA NA prediction 0.412479424339449 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19359656 chr19:19359655 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_31918 0 0 0 0 1 NCAN chr19:19359691 5'GT 19359691 Upstream 37bp 29312 chr16 31384634 31384634 1 + G A LUSC 31384635 + 31384615 31384655 41 AGTGATGGTGTGGAATGACGGGGAAGACTCCTACGGAACCA AGTGATGGTGTGGAATGACAGGGAAGACTCCTACGGAACCA < 41bp 0.50459202582569 0.71083118127801 NA NA prediction 0.41247831090464 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31384635 chr16:31384634 nonsynonymous SNV 0.372 3 20 hm7G_associated_SNPs_31919 0 0 0 0 2 ITGAX chr16:31384570 3'AG 31384570 Downstream 65bp 29313 chr16 31384634 31384634 1 + G A LUSC 31384635 + 31384615 31384655 41 AGTGATGGTGTGGAATGACGGGGAAGACTCCTACGGAACCA AGTGATGGTGTGGAATGACAGGGAAGACTCCTACGGAACCA < 41bp 0.50459202582569 0.71083118127801 NA NA prediction 0.41247831090464 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31384635 chr16:31384634 nonsynonymous SNV 0.372 3 20 hm7G_associated_SNPs_31919 0 0 0 0 2 ITGAX chr16:31384711 5'GT 31384711 Upstream 78bp 29314 chr3 172046847 172046847 1 + C T COAD 172046848 + 172046828 172046868 41 CACATTCAGGCTGGCCGCTCGAAACGACATTGGTACCAGGT CACATTCAGGCTGGCCGCTTGAAACGACATTGGTACCAGGT < 41bp 0.511916528119605 0.718152683062069 NA NA prediction 0.412472309884929 Functional Gain - FNDC3B ENSG00000075420 CDS Human protein_coding chr3:172046848 chr3:172046847 stopgain 0.884 1 20 hm7G_associated_SNPs_31921 0 0 1 0 1 FNDC3B chr3:172046866 5'GT 172046866 Upstream 20bp 29315 chr16 28602916 28602916 1 + G T UCEC 28602917 + 28602897 28602937 41 TGCCTGCCCCACAGCCCCAGGATGACTACTCGGTCCTGTTT TGCCTGCCCCACAGCCCCATGATGACTACTCGGTCCTGTTT < 41bp 0.700707880044329 0.906940598176829 NA NA prediction 0.412465436265001 Functional Gain - SGF29 ENSG00000176476 CDS Human protein_coding chr16:28602917 chr16:28602916 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_31922 0 0 0 0 1 SGF29 chr16:28602911 3'AG 28602911 Downstream 6bp 29316 chr7 128494692 128494692 1 + G A SKCM 128494693 + 128494673 128494713 41 GGTGGTGCCCACAAGGTGCGGGCCGGAGGCACAGGGCTGGA GGTGGTGCCCACAAGGTGCAGGCCGGAGGCACAGGGCTGGA < 41bp 0.493812120360568 0.706231513648784 NA NA prediction 0.412463027297569 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128494693 chr7:128494692 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_31923 0 0 1 0 1 FLNC chr7:128494736 5'GT 128494736 Upstream 45bp 29317 chr6 159029487 159029487 1 + C T rs117665206 159029488 + 159029468 159029508 41 GTGCGTGTACCACGGGATTCGTGTCCAGGTGAGCCGGAGCC GTGCGTGTACCACGGGATTTGTGTCCAGGTGAGCCGGAGCC < 41bp 0.507739052232964 0.713968176894084 NA NA prediction 0.41245824932224 Functional Gain - TMEM181 ENSG00000146433 CDS Human protein_coding chr6:159029488 chr6:159029487 nonsynonymous SNV 0.604 4 20 hm7G_associated_SNPs_31924 0 0 1 0 1 TMEM181 chr6:159029495 5'GT 159029495 Upstream 9bp 29318 chr5 31299603 31299603 1 + C T PCPG 31299604 + 31299584 31299624 41 AGCTTTGCTCAACATGGATCGAGAAAACAGGGAGCAGTACC AGCTTTGCTCAACATGGATTGAGAAAACAGGGAGCAGTACC < 41bp 0.513113777631545 0.719340237000477 NA NA prediction 0.412452918737862 Functional Gain - CDH6 ENSG00000113361 CDS Human protein_coding chr5:31299604 chr5:31299603 stopgain 0.998 1 20 hm7G_associated_SNPs_31926 0 0 0 0 1 CDH6 chr5:31299571 3'AG 31299571 Downstream 33bp 29319 chr20 61296364 61296364 1 + C T rs145175877 61296365 + 61296345 61296385 41 CCGAGGCCACTCTCATCACCGGCATGTCCACGTTCAGCCCC CCGAGGCCACTCTCATCACTGGCATGTCCACGTTCAGCCCC < 41bp 0.532693210166202 0.73891638090387 NA NA prediction 0.412446341475337 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296365 chr20:61296364 synonymous SNV . 0 20 hm7G_associated_SNPs_31928 0 0 1 0 2 SLCO4A1 chr20:61296286 3'AG 61296286 Downstream 79bp 29320 chr20 61296364 61296364 1 + C T rs145175877 61296365 + 61296345 61296385 41 CCGAGGCCACTCTCATCACCGGCATGTCCACGTTCAGCCCC CCGAGGCCACTCTCATCACTGGCATGTCCACGTTCAGCCCC < 41bp 0.532693210166202 0.73891638090387 NA NA prediction 0.412446341475337 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61296365 chr20:61296364 synonymous SNV . 0 20 hm7G_associated_SNPs_31928 0 0 1 0 2 SLCO4A1 chr20:61296440 5'GT 61296440 Upstream 77bp 29321 chr9 20821002 20821002 1 + G T rs76714249 20821003 + 20820983 20821023 41 ATGTACCTTCTCTTTCGGTGGGCAAGGAAGTCCAATGGGAG ATGTACCTTCTCTTTCGGTTGGCAAGGAAGTCCAATGGGAG < 41bp 0.364592403045291 0.706222477696196 NA NA prediction 0.412444955392392 Functional Gain - FOCAD ENSG00000188352 CDS Human protein_coding chr9:20821003 chr9:20821002 synonymous SNV . 0 20 hm7G_associated_SNPs_31929 0 0 1 0 2 FOCAD chr9:20820940 3'AG 20820940 Downstream 63bp 29322 chr9 20821002 20821002 1 + G T rs76714249 20821003 + 20820983 20821023 41 ATGTACCTTCTCTTTCGGTGGGCAAGGAAGTCCAATGGGAG ATGTACCTTCTCTTTCGGTTGGCAAGGAAGTCCAATGGGAG < 41bp 0.364592403045291 0.706222477696196 NA NA prediction 0.412444955392392 Functional Gain - FOCAD ENSG00000188352 CDS Human protein_coding chr9:20821003 chr9:20821002 synonymous SNV . 0 20 hm7G_associated_SNPs_31929 0 0 1 0 2 FOCAD chr9:20821070 5'GT 20821070 Upstream 69bp 29323 chr3 42701251 42701251 1 + C T UCEC 42701252 + 42701232 42701272 41 TGCAGATCTGCGACCAGTGCGGCAAGCGCTTCCTGCTGGAG TGCAGATCTGCGACCAGTGTGGCAAGCGCTTCCTGCTGGAG < 41bp 0.499723199173271 0.706221752641767 NA NA prediction 0.412443505283535 Functional Gain - ZBTB47 ENSG00000114853 CDS Human protein_coding chr3:42701252 chr3:42701251 synonymous SNV . 0 20 hm7G_associated_SNPs_31930 0 0 0 0 1 ZBTB47 chr3:42701320 5'GT 42701320 Upstream 70bp 29324 chr3 64184539 64184539 1 - C A STAD 64184538 - 64184518 64184558 41 CTCATGTTTGACTTTCAGAGGAACTCGACCTCAGATGATGA CTCATGTTTGACTTTCAGATGAACTCGACCTCAGATGATGA < 41bp 0.371666469196463 0.706221533415836 NA NA prediction 0.412443066831673 Functional Gain - PRICKLE2 ENSG00000163637 CDS Human protein_coding chr3:64184538 chr3:64184539 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_31931 0 0 0 0 1 PRICKLE2 chr3:64184460 5'GT 64184460 Upstream 80bp 29325 chr6 4952583 4952583 1 + C T rs150165899 4952584 + 4952564 4952604 41 TCTCCCAGGTGTTTTGGCCCGGGACGTTCACTCAGGAAGTG TCTCCCAGGTGTTTTGGCCTGGGACGTTCACTCAGGAAGTG < 41bp 0.515191090706596 0.721412354695546 NA NA prediction 0.412442527977901 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4952584 chr6:4952583 synonymous SNV . 0 20 hm7G_associated_SNPs_31932 0 0 1 0 2 CDYL chr6:4952500 3'AG 4952500 Downstream 84bp 29326 chr6 4952583 4952583 1 + C T rs150165899 4952584 + 4952564 4952604 41 TCTCCCAGGTGTTTTGGCCCGGGACGTTCACTCAGGAAGTG TCTCCCAGGTGTTTTGGCCTGGGACGTTCACTCAGGAAGTG < 41bp 0.515191090706596 0.721412354695546 NA NA prediction 0.412442527977901 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4952584 chr6:4952583 synonymous SNV . 0 20 hm7G_associated_SNPs_31932 0 0 1 0 2 CDYL chr6:4952643 5'GT 4952643 Upstream 61bp 29327 chr19 50771559 50771559 1 + G A ESCA 50771560 + 50771540 50771580 41 AGAGCTGGAGGCTCGCGTGGGCGAGGAGGAGGAGTGCAGCC AGAGCTGGAGGCTCGCGTGAGCGAGGAGGAGGAGTGCAGCC < 41bp 0.52279866098446 0.729019253287975 NA NA prediction 0.412441184607029 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50771560 chr19:50771559 nonsynonymous SNV 0.985 0 20 hm7G_associated_SNPs_31933 0 0 1 0 1 MYH14 chr19:50771624 5'GT 50771624 Upstream 66bp 29328 chr1 34677853 34677853 1 + C T STAD 34677854 + 34677834 34677874 41 GATGGGACAGCAGATCTTCCGCTCTTCCTACACCCCTCTGC GATGGGACAGCAGATCTTCTGCTCTTCCTACACCCCTCTGC < 41bp 0.491981401977271 0.706220539223377 NA NA prediction 0.412441078446754 Functional Gain - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34677854 chr1:34677853 nonsynonymous SNV 0.183 3 20 hm7G_associated_SNPs_31934 0 0 0 0 1 C1orf94 chr1:34677811 3'AG 34677811 Downstream 43bp 29329 chr13 32332521 32332521 1 + G A SKCM 32332522 + 32332502 32332542 41 AAGGATGACTGTGGGAACGGGGCGGACGAAGAGAACTGTGG AAGGATGACTGTGGGAACGAGGCGGACGAAGAGAACTGTGG < 41bp 0.505829504552727 0.712049118382437 NA NA prediction 0.41243922765942 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32332522 chr13:32332521 nonsynonymous SNV 0.032 5 20 hm7G_associated_SNPs_31936 0 0 0 0 1 RXFP2 chr13:32332541 5'GT 32332541 Upstream 21bp 29330 chr4 120181745 120181745 1 + C T UCEC 120181746 + 120181726 120181766 41 TTGGTTTAGTCTGGGACTCCGAGCATTCTGACTTGACCGAA TTGGTTTAGTCTGGGACTCTGAGCATTCTGACTTGACCGAA < 41bp 0.53983852836545 0.746056411619235 NA NA prediction 0.41243576650757 Functional Gain - USP53 ENSG00000145390 CDS Human protein_coding chr4:120181746 chr4:120181745 synonymous SNV . 0 20 hm7G_associated_SNPs_31938 0 0 1 0 1 USP53 chr4:120181808 5'GT 120181808 Upstream 64bp 29331 chr15 40864010 40864010 1 + C T ESCA 40864011 + 40863991 40864031 41 GGAGCTACACCCCTTGCATCGGCTTGACCGCCTTACCTCAG GGAGCTACACCCCTTGCATTGGCTTGACCGCCTTACCTCAG < 41bp 0.52175628936902 0.727971275734547 NA NA prediction 0.412429972731053 Functional Gain - RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40864011 chr15:40864010 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31939 0 0 0 0 1 RPUSD2 chr15:40864099 5'GT 40864099 Upstream 90bp 29332 chr1 53108595 53108595 1 + C T READ 53108596 + 53108576 53108616 41 TTCTCGCCTTCATTGTTACCGCCTGTGTGCTCTGCTACCTG TTCTCGCCTTCATTGTTACTGCCTGTGTGCTCTGCTACCTG < 41bp 0.497831905742505 0.706212809658568 NA NA prediction 0.412425619317135 Functional Gain - FAM159A ENSG00000182183 CDS Human protein_coding chr1:53108596 chr1:53108595 synonymous SNV . 0 20 hm7G_associated_SNPs_31940 0 0 0 1 2 FAM159A chr1:53108535 3'AG 53108535 Downstream 61bp 29333 chr1 53108595 53108595 1 + C T READ 53108596 + 53108576 53108616 41 TTCTCGCCTTCATTGTTACCGCCTGTGTGCTCTGCTACCTG TTCTCGCCTTCATTGTTACTGCCTGTGTGCTCTGCTACCTG < 41bp 0.497831905742505 0.706212809658568 NA NA prediction 0.412425619317135 Functional Gain - FAM159A ENSG00000182183 CDS Human protein_coding chr1:53108596 chr1:53108595 synonymous SNV . 0 20 hm7G_associated_SNPs_31940 0 0 0 1 2 FAM159A chr1:53108674 5'GT 53108674 Upstream 80bp 29334 chr2 242151534 242151534 1 + C T SKCM 242151535 + 242151515 242151555 41 ACCGCACCCAGACCAAGTTCGAGGACGCCTTCACCCTCAAG ACCGCACCCAGACCAAGTTTGAGGACGCCTTCACCCTCAAG < 41bp 0.518353790098283 0.724566405410821 NA NA prediction 0.412425230625076 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242151535 chr2:242151534 synonymous SNV . 0 20 hm7G_associated_SNPs_31941 0 0 0 0 2 ANO7 chr2:242151509 3'AG 242151509 Downstream 26bp 29335 chr2 242151534 242151534 1 + C T SKCM 242151535 + 242151515 242151555 41 ACCGCACCCAGACCAAGTTCGAGGACGCCTTCACCCTCAAG ACCGCACCCAGACCAAGTTTGAGGACGCCTTCACCCTCAAG < 41bp 0.518353790098283 0.724566405410821 NA NA prediction 0.412425230625076 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242151535 chr2:242151534 synonymous SNV . 0 20 hm7G_associated_SNPs_31941 0 0 0 0 2 ANO7 chr2:242151620 5'GT 242151620 Upstream 87bp 29336 chr11 117265851 117265851 1 + C T LUAD 117265852 + 117265832 117265872 41 CTGCAAGGAGGAGACCGCCCGGAGGGAGAAGCAGCAGCTGC CTGCAAGGAGGAGACCGCCTGGAGGGAGAAGCAGCAGCTGC < 41bp 0.530984444022191 0.737194028086186 NA NA prediction 0.41241916812799 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117265852 chr11:117265851 nonsynonymous SNV 0.356 2 20 hm7G_associated_SNPs_31942 0 0 1 0 2 CEP164 chr11:117265839 3'AG 117265839 Downstream 13bp 29337 chr11 117265851 117265851 1 + C T LUAD 117265852 + 117265832 117265872 41 CTGCAAGGAGGAGACCGCCCGGAGGGAGAAGCAGCAGCTGC CTGCAAGGAGGAGACCGCCTGGAGGGAGAAGCAGCAGCTGC < 41bp 0.530984444022191 0.737194028086186 NA NA prediction 0.41241916812799 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117265852 chr11:117265851 nonsynonymous SNV 0.356 2 20 hm7G_associated_SNPs_31942 0 0 1 0 2 CEP164 chr11:117265907 5'GT 117265907 Upstream 57bp 29338 chr17 6903694 6903694 1 + G A SKCM 6903695 + 6903675 6903715 41 TGACTTCATCCTTCTGGATGGAATTCCAGCCAACGTGATCC TGACTTCATCCTTCTGGATAGAATTCCAGCCAACGTGATCC < 41bp 0.518268987301935 0.72447754422135 NA NA prediction 0.41241711383883 Functional Gain - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6903695 chr17:6903694 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_31943 0 0 0 0 1 ALOX12 chr17:6903655 3'AG 6903655 Downstream 40bp 29339 chr11 61111709 61111709 1 + G A SKCM 61111710 + 61111690 61111730 41 GGACCGGGCTGCTGGTGACGGCGACTGTGGCACCACCCACA GGACCGGGCTGCTGGTGACAGCGACTGTGGCACCACCCACA < 41bp 0.55732730498685 0.763535188959988 NA NA prediction 0.412415767946275 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61111710 chr11:61111709 nonsynonymous SNV 0.507 4 20 hm7G_associated_SNPs_31944 0 0 1 0 1 TKFC chr11:61111745 5'GT 61111745 Upstream 37bp 29340 chr1 11888593 11888593 1 + G A STAD 11888594 + 11888574 11888614 41 CGTGATGGGGGTCATTGGGGGCCTCCTGGGAGCCACATTCA CGTGATGGGGGTCATTGGGAGCCTCCTGGGAGCCACATTCA < 41bp 0.525758478133036 0.731962244360126 NA NA prediction 0.412407532454179 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11888594 chr1:11888593 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31945 0 0 1 0 2 CLCN6 chr1:11888515 3'AG 11888515 Downstream 79bp 29341 chr1 11888593 11888593 1 + G A STAD 11888594 + 11888574 11888614 41 CGTGATGGGGGTCATTGGGGGCCTCCTGGGAGCCACATTCA CGTGATGGGGGTCATTGGGAGCCTCCTGGGAGCCACATTCA < 41bp 0.525758478133036 0.731962244360126 NA NA prediction 0.412407532454179 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11888594 chr1:11888593 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_31945 0 0 1 0 2 CLCN6 chr1:11888681 5'GT 11888681 Upstream 89bp 29342 chr2 95954315 95954315 1 + C T rs35884217 95954316 + 95954296 95954336 41 CAAGACCTCCAAATACTTCCGTCCTATCCGGAAACGCCTCA CAAGACCTCCAAATACTTCTGTCCTATCCGGAAACGCCTCA < 41bp 0.503317510786333 0.709518154010701 NA NA prediction 0.412401286448736 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95954316 chr2:95954315 nonsynonymous SNV 0.917 3 20 hm7G_associated_SNPs_31948 0 0 1 0 2 PROM2 chr2:95954231 3'AG 95954231 Downstream 85bp 29343 chr2 95954315 95954315 1 + C T rs35884217 95954316 + 95954296 95954336 41 CAAGACCTCCAAATACTTCCGTCCTATCCGGAAACGCCTCA CAAGACCTCCAAATACTTCTGTCCTATCCGGAAACGCCTCA < 41bp 0.503317510786333 0.709518154010701 NA NA prediction 0.412401286448736 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95954316 chr2:95954315 nonsynonymous SNV 0.917 3 20 hm7G_associated_SNPs_31948 0 0 1 0 2 PROM2 chr2:95954337 5'GT 95954337 Upstream 23bp 29344 chr16 23359989 23359989 1 + G A SKCM 23359990 + 23359970 23360010 41 GCCCCGGCTACACGTACAAGGAGCTGCTGGTGTGGTACTGC GCCCCGGCTACACGTACAAAGAGCTGCTGGTGTGGTACTGC < 41bp 0.485640910239489 0.706196855279342 NA NA prediction 0.412393710558684 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23359990 chr16:23359989 synonymous SNV . 0 20 hm7G_associated_SNPs_31950 0 0 0 0 1 SCNN1B chr16:23359913 3'AG 23359913 Downstream 77bp 29345 chr12 65264453 65264453 1 + C T UCEC 65264454 + 65264434 65264474 41 AGGAGCAATCAATTCCTGTCGAAGTGAATACCATGCAGCTT AGGAGCAATCAATTCCTGTTGAAGTGAATACCATGCAGCTT < 41bp 0.527410380839143 0.73360658358882 NA NA prediction 0.412392405499353 Functional Gain - TBC1D30 ENSG00000111490 CDS Human protein_coding chr12:65264454 chr12:65264453 stopgain 0.124 0 20 hm7G_associated_SNPs_31951 0 0 0 0 1 TBC1D30 chr12:65264382 3'AG 65264382 Downstream 72bp 29346 chr1 12018611 12018611 1 + C T THYM 12018612 + 12018592 12018632 41 TCCTGGTCGGCGTGTTCATCGAACAGCCCACGCCGTTTGTG TCCTGGTCGGCGTGTTCATTGAACAGCCCACGCCGTTTGTG < 41bp 0.494194556460928 0.706195237531554 NA NA prediction 0.412390475063109 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12018612 chr1:12018611 synonymous SNV . 0 20 hm7G_associated_SNPs_31952 0 0 1 0 2 PLOD1 chr1:12018573 3'AG 12018573 Downstream 39bp 29347 chr1 12018611 12018611 1 + C T THYM 12018612 + 12018592 12018632 41 TCCTGGTCGGCGTGTTCATCGAACAGCCCACGCCGTTTGTG TCCTGGTCGGCGTGTTCATTGAACAGCCCACGCCGTTTGTG < 41bp 0.494194556460928 0.706195237531554 NA NA prediction 0.412390475063109 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12018612 chr1:12018611 synonymous SNV . 0 20 hm7G_associated_SNPs_31952 0 0 1 0 2 PLOD1 chr1:12018704 5'GT 12018704 Upstream 94bp 29348 chr6 35255538 35255538 1 + G A GBM 35255539 + 35255519 35255559 41 TCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCA TCCTGGCCGTACAGACAGAAGTGGGCTTGGAGGACCTGGCA < 41bp 0.50978074648776 0.715970802705366 NA NA prediction 0.412380112435211 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35255539 chr6:35255538 synonymous SNV . 0 20 hm7G_associated_SNPs_31954 0 0 1 0 1 ZNF76 chr6:35255622 5'GT 35255622 Upstream 85bp 29349 chr1 1267253 1267253 1 + G A rs140582284 1267254 + 1267234 1267274 41 CCGTGTGCTGGCTGTCATCGGGCCCCACTCGTCAGAGCTCG CCGTGTGCTGGCTGTCATCAGGCCCCACTCGTCAGAGCTCG < 41bp 0.58077879357887 0.786967959984781 NA NA prediction 0.412378332811822 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1267254 chr1:1267253 nonsynonymous SNV 0.859 5 20 hm7G_associated_SNPs_31955 0 0 0 0 1 TAS1R3 chr1:1267318 5'GT 1267318 Upstream 66bp 29350 chr12 51135229 51135229 1 + C T UCEC 51135230 + 51135210 51135250 41 GCATTGTATGTGGTGGGAGCGCTGGATGAAACACTGGAGCT GCATTGTATGTGGTGGGAGTGCTGGATGAAACACTGGAGCT < 41bp 0.530123369507757 0.736312106812939 NA NA prediction 0.412377474610364 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51135230 chr12:51135229 nonsynonymous SNV 0.812 2 20 hm7G_associated_SNPs_31957 0 0 1 0 2 DIP2B chr12:51135199 3'AG 51135199 Downstream 31bp 29351 chr12 51135229 51135229 1 + C T UCEC 51135230 + 51135210 51135250 41 GCATTGTATGTGGTGGGAGCGCTGGATGAAACACTGGAGCT GCATTGTATGTGGTGGGAGTGCTGGATGAAACACTGGAGCT < 41bp 0.530123369507757 0.736312106812939 NA NA prediction 0.412377474610364 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51135230 chr12:51135229 nonsynonymous SNV 0.812 2 20 hm7G_associated_SNPs_31957 0 0 1 0 2 DIP2B chr12:51135322 5'GT 51135322 Upstream 94bp 29352 chr12 54963069 54963069 1 + G T LUAD 54963070 + 54963050 54963090 41 ACCTTCACCCAGCAGGCCCGGGCCAAAGGCCGCCGAGCAGA ACCTTCACCCAGCAGGCCCTGGCCAAAGGCCGCCGAGCAGA < 41bp 0.62518199619733 0.831368509044838 NA NA prediction 0.412373025695016 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54963070 chr12:54963069 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_31958 0 0 0 0 2 PDE1B chr12:54963065 3'AG 54963065 Downstream 5bp 29353 chr12 54963069 54963069 1 + G T LUAD 54963070 + 54963050 54963090 41 ACCTTCACCCAGCAGGCCCGGGCCAAAGGCCGCCGAGCAGA ACCTTCACCCAGCAGGCCCTGGCCAAAGGCCGCCGAGCAGA < 41bp 0.62518199619733 0.831368509044838 NA NA prediction 0.412373025695016 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54963070 chr12:54963069 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_31958 0 0 0 0 2 PDE1B chr12:54963150 5'GT 54963150 Upstream 82bp 29354 chr8 22868168 22868168 1 + C T STAD 22868169 + 22868149 22868189 41 GCTCATCATTCTAGCCAACCGCCTCTGCCTGCCACACCTGG GCTCATCATTCTAGCCAACTGCCTCTGCCTGCCACACCTGG < 41bp 0.544876299344413 0.751058638080823 NA NA prediction 0.412364677472819 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22868169 chr8:22868168 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_31961 0 0 0 0 1 RHOBTB2 chr8:22868201 5'GT 22868201 Upstream 34bp 29355 chr4 81121318 81121318 1 + C T COAD 81121319 + 81121299 81121339 41 TGACAGATATTTTTACCAGCGTTTACACCACCTGCGACATC TGACAGATATTTTTACCAGTGTTTACACCACCTGCGACATC < 41bp 0.510195479820099 0.716375536501659 NA NA prediction 0.412360113363119 Functional Gain - PRDM8 ENSG00000152784 CDS Human protein_coding chr4:81121319 chr4:81121318 synonymous SNV . 0 20 hm7G_associated_SNPs_31962 0 0 0 0 1 PRDM8 chr4:81121233 3'AG 81121233 Downstream 86bp 29356 chr19 6913826 6913826 1 + C T CESC 6913827 + 6913807 6913847 41 AAATATCACTCCGGCTGTTCGGACGGAATACTTAGGTAGGA AAATATCACTCCGGCTGTTTGGACGGAATACTTAGGTAGGA < 41bp 0.501186210826293 0.707362321821292 NA NA prediction 0.412352221989997 Functional Gain - ADGRE1 ENSG00000174837 CDS Human protein_coding chr19:6913827 chr19:6913826 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_31966 0 0 0 0 1 ADGRE1 chr19:6913841 5'GT 6913841 Upstream 16bp 29357 chr5 75597257 75597257 1 + C T READ 75597258 + 75597238 75597278 41 GCTGTTTCTTCCTTTGGTTCGGCACCAGTGAATCCATGATG GCTGTTTCTTCCTTTGGTTTGGCACCAGTGAATCCATGATG < 41bp 0.530057021340171 0.736230458113783 NA NA prediction 0.412346873547224 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75597258 chr5:75597257 synonymous SNV . 0 20 hm7G_associated_SNPs_31968 0 0 0 0 1 SV2C chr5:75597211 3'AG 75597211 Downstream 47bp 29358 chr10 88478582 88478582 1 + C T COAD 88478583 + 88478563 88478603 41 GCCTCTTCCACATGGAAGACGGGGAGCCCTACTGCGAGAAA GCCTCTTCCACATGGAAGATGGGGAGCCCTACTGCGAGAAA < 41bp 0.513121895843163 0.719293752404998 NA NA prediction 0.41234371312367 Functional Gain - LDB3 ENSG00000122367 CDS Human protein_coding chr10:88478583 chr10:88478582 synonymous SNV . 0 20 hm7G_associated_SNPs_31969 2 0 0 0 1 LDB3 chr10:88478604 5'GT 88478604 Upstream 23bp 29359 chr2 121745807 121745807 1 + G A SKCM 121745808 + 121745788 121745828 41 CATCCTGGAAAACTTCAGTGGCAGTGGGGGCGGCGGGCCCG CATCCTGGAAAACTTCAGTAGCAGTGGGGGCGGCGGGCCCG < 41bp 0.553952882167345 0.760123488351755 NA NA prediction 0.412341212368819 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121745808 chr2:121745807 nonsynonymous SNV 0.020 1 20 hm7G_associated_SNPs_31971 0 0 0 0 1 GLI2 chr2:121745784 3'AG 121745784 Downstream 24bp 29360 chr19 55420628 55420628 1 + C T BLCA 55420629 + 55420609 55420649 41 TATGACACACCCACCCTCTCGGTTCATCCTGGACCCGAAGT TATGACACACCCACCCTCTTGGTTCATCCTGGACCCGAAGT < 41bp 0.518196952989451 0.724366093541182 NA NA prediction 0.412338281103463 Functional Gain - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55420629 chr19:55420628 nonsynonymous SNV 0.059 0 20 hm7G_associated_SNPs_31972 0 0 0 0 1 NCR1 chr19:55420604 3'AG 55420604 Downstream 25bp 29361 chr9 131568248 131568248 1 + C T COAD 131568249 + 131568229 131568269 41 TCTGGGACTCCCTCTTCGCCGATGACAACCGCTTTGACTTC TCTGGGACTCCCTCTTCGCTGATGACAACCGCTTTGACTTC < 41bp 0.518937118822311 0.725104418569418 NA NA prediction 0.412334599494214 Functional Gain - TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131568249 chr9:131568248 synonymous SNV . 0 20 hm7G_associated_SNPs_31974 0 0 1 0 1 TBC1D13 chr9:131568298 5'GT 131568298 Upstream 51bp 29362 chr1 11589656 11589656 1 + C T COAD 11589657 + 11589637 11589677 41 CAAGCCCCCCTTCCACGGGCGCGTATGCATGGCACCCCCTG CAAGCCCCCCTTCCACGGGTGCGTATGCATGGCACCCCCTG < 41bp 0.500458915292564 0.706626101400093 NA NA prediction 0.412334372215059 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589657 chr1:11589656 nonsynonymous SNV 0.286 4 20 hm7G_associated_SNPs_31975 0 0 0 0 2 DISP3 chr1:11589613 3'AG 11589613 Downstream 44bp 29363 chr1 11589656 11589656 1 + C T COAD 11589657 + 11589637 11589677 41 CAAGCCCCCCTTCCACGGGCGCGTATGCATGGCACCCCCTG CAAGCCCCCCTTCCACGGGTGCGTATGCATGGCACCCCCTG < 41bp 0.500458915292564 0.706626101400093 NA NA prediction 0.412334372215059 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11589657 chr1:11589656 nonsynonymous SNV 0.286 4 20 hm7G_associated_SNPs_31975 0 0 0 0 2 DISP3 chr1:11589743 5'GT 11589743 Upstream 88bp 29364 chr9 93639971 93639971 1 + C T UCEC 93639972 + 93639952 93639992 41 GGACAACCCGTACATCGTGCGGATGATCGGGATATGCGAGG GGACAACCCGTACATCGTGTGGATGATCGGGATATGCGAGG < 41bp 0.550933150989502 0.757099668596753 NA NA prediction 0.412333035214502 Functional Gain - SYK ENSG00000165025 CDS Human protein_coding chr9:93639972 chr9:93639971 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_31976 0 0 0 0 1 SYK chr9:93640062 5'GT 93640062 Upstream 92bp 29365 chr11 120187971 120187971 1 + G A rs2282537 120187972 + 120187952 120187992 41 TCCCCTGGGAACAACAGCAGGCCTTCATCTCCTGGCTCAGG TCCCCTGGGAACAACAGCAAGCCTTCATCTCCTGGCTCAGG < 41bp 0.533212262578009 0.739378565311602 NA NA prediction 0.412332605467185 Functional Gain - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120187972 chr11:120187971 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_31977 0 0 0 3 1 POU2F3 chr11:120187938 3'AG 120187938 Downstream 34bp 29366 chr1 159799910 159799910 1 + G A rs34687326 159799911 + 159799891 159799931 41 GCTGGAGTCTGGAGACAGCGGCAACTTCTCCGTGTTGATGG GCTGGAGTCTGGAGACAGCAGCAACTTCTCCGTGTTGATGG < 41bp 0.545335254474201 0.751501189768486 NA NA prediction 0.412331870588571 Functional Gain - SLAMF8 ENSG00000158714 CDS Human protein_coding chr1:159799911 chr1:159799910 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_31978 0 1 0 0 1 SLAMF8 chr1:159799982 5'GT 159799982 Upstream 73bp 29367 chr7 45632413 45632413 1 + G T LUAD 45632414 + 45632394 45632434 41 ATGTATGGGGTCTTTGTGCGGATTCTGACTGAGCGTTCACA ATGTATGGGGTCTTTGTGCTGATTCTGACTGAGCGTTCACA < 41bp 0.356843420551537 0.70616534344371 NA NA prediction 0.41233068688742 Functional Gain - ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45632414 chr7:45632413 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_31979 0 0 1 0 2 ADCY1 chr7:45632358 3'AG 45632358 Downstream 56bp 29368 chr7 45632413 45632413 1 + G T LUAD 45632414 + 45632394 45632434 41 ATGTATGGGGTCTTTGTGCGGATTCTGACTGAGCGTTCACA ATGTATGGGGTCTTTGTGCTGATTCTGACTGAGCGTTCACA < 41bp 0.356843420551537 0.70616534344371 NA NA prediction 0.41233068688742 Functional Gain - ADCY1 ENSG00000164742 CDS Human protein_coding chr7:45632414 chr7:45632413 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_31979 0 0 1 0 2 ADCY1 chr7:45632507 5'GT 45632507 Upstream 95bp 29369 chr12 57971842 57971842 1 + C T UCEC 57971843 + 57971823 57971863 41 GCAAGCTGTTCGTTCAAGACGTCACGACTCGAGTCAAGAAA GCAAGCTGTTCGTTCAAGATGTCACGACTCGAGTCAAGAAA < 41bp 0.518548379664734 0.724713638707677 NA NA prediction 0.412330518085886 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57971843 chr12:57971842 synonymous SNV . 0 20 hm7G_associated_SNPs_31980 2 0 0 0 2 KIF5A chr12:57971792 3'AG 57971792 Downstream 51bp 29370 chr12 57971842 57971842 1 + C T UCEC 57971843 + 57971823 57971863 41 GCAAGCTGTTCGTTCAAGACGTCACGACTCGAGTCAAGAAA GCAAGCTGTTCGTTCAAGATGTCACGACTCGAGTCAAGAAA < 41bp 0.518548379664734 0.724713638707677 NA NA prediction 0.412330518085886 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57971843 chr12:57971842 synonymous SNV . 0 20 hm7G_associated_SNPs_31980 2 0 0 0 2 KIF5A chr12:57971863 5'GT 57971863 Upstream 22bp 29371 chr12 9089869 9089869 1 + C T UCEC 9089870 + 9089850 9089890 41 CGTTCGCAGGCGTGGACCCCGCCGCAGCTCCTCTGACATTG CGTTCGCAGGCGTGGACCCTGCCGCAGCTCCTCTGACATTG < 41bp 0.546387420613241 0.752551623603971 NA NA prediction 0.41232840598146 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9089870 chr12:9089869 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_31981 0 0 0 0 2 PHC1 chr12:9089772 3'AG 9089772 Downstream 98bp 29372 chr12 9089869 9089869 1 + C T UCEC 9089870 + 9089850 9089890 41 CGTTCGCAGGCGTGGACCCCGCCGCAGCTCCTCTGACATTG CGTTCGCAGGCGTGGACCCTGCCGCAGCTCCTCTGACATTG < 41bp 0.546387420613241 0.752551623603971 NA NA prediction 0.41232840598146 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9089870 chr12:9089869 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_31981 0 0 0 0 2 PHC1 chr12:9089922 5'GT 9089922 Upstream 54bp 29373 chr22 24911318 24911318 1 + G A GBM 24911319 + 24911299 24911339 41 AGATCATCTTCAACCCCTCGGCCACGATAGGAGCACTCAGG AGATCATCTTCAACCCCTCAGCCACGATAGGAGCACTCAGG < 41bp 0.541168995203416 0.747332863104644 NA NA prediction 0.412327735802456 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24911319 chr22:24911318 synonymous SNV . 0 20 hm7G_associated_SNPs_31982 0 0 0 0 1 UPB1 chr22:24911338 5'GT 24911338 Upstream 21bp 29374 chr3 111343206 111343206 1 + G T LUAD 111343207 + 111343187 111343227 41 TTCCAGTATGACTACCCGAGGCTTCAACTATCCCTGGACCT TTCCAGTATGACTACCCGATGCTTCAACTATCCCTGGACCT < 41bp 0.369012856544327 0.706162243209149 NA NA prediction 0.412324486418298 Functional Gain - CD96 ENSG00000153283 CDS Human protein_coding chr3:111343207 chr3:111343206 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_31983 0 0 0 0 2 CD96 chr3:111343180 3'AG 111343180 Downstream 27bp 29375 chr3 111343206 111343206 1 + G T LUAD 111343207 + 111343187 111343227 41 TTCCAGTATGACTACCCGAGGCTTCAACTATCCCTGGACCT TTCCAGTATGACTACCCGATGCTTCAACTATCCCTGGACCT < 41bp 0.369012856544327 0.706162243209149 NA NA prediction 0.412324486418298 Functional Gain - CD96 ENSG00000153283 CDS Human protein_coding chr3:111343207 chr3:111343206 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_31983 0 0 0 0 2 CD96 chr3:111343251 5'GT 111343251 Upstream 46bp 29376 chr3 49751585 49751585 1 + C T rs2291542 49751586 + 49751566 49751606 41 TGAAAACCAAACTTGAGGACGCCAATTTGCCCAGCCTCCAG TGAAAACCAAACTTGAGGATGCCAATTTGCCCAGCCTCCAG < 41bp 0.514649650272818 0.720809102075278 NA NA prediction 0.412318903604921 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49751586 chr3:49751585 synonymous SNV . 0 20 hm7G_associated_SNPs_31986 0 1 1 1 1 RNF123 chr3:49751523 3'AG 49751523 Downstream 63bp 29377 chr11 65735168 65735168 1 + C T rs143607098 65735169 + 65735149 65735189 41 GAGGAAGGTGGAGCTCCACCGCCGGGGTCCCCGCAGGTGCT GAGGAAGGTGGAGCTCCACTGCCGGGGTCCCCGCAGGTGCT < 41bp 0.505837629246892 0.711993065194287 NA NA prediction 0.41231087189479 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65735169 chr11:65735168 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_31989 0 0 1 0 1 SART1 chr11:65735150 3'AG 65735150 Downstream 19bp 29378 chrX 69646847 69646847 1 + C T LGG 69646848 + 69646828 69646868 41 GCCTGGGCTGGTGGGACACCGAGGGGCCCCCATGGTGAGTG GCCTGGGCTGGTGGGACACTGAGGGGCCCCCATGGTGAGTG < 41bp 0.525374573872502 0.731529441962826 NA NA prediction 0.412309736180648 Functional Gain - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69646848 chrX:69646847 stopgain 1.000 1 20 hm7G_associated_SNPs_31990 0 0 0 0 1 GDPD2 chrX:69646861 5'GT 69646861 Upstream 15bp 29379 chr6 148855051 148855051 1 + C T rs181967135 148855052 + 148855032 148855072 41 CAAACGCCCCACCAGGAGGCGTCGGAAAGGACGACCACCCC CAAACGCCCCACCAGGAGGTGTCGGAAAGGACGACCACCCC < 41bp 0.51545445061309 0.72160533172775 NA NA prediction 0.412301762229319 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148855052 chr6:148855051 nonsynonymous SNV 0.782 3 20 hm7G_associated_SNPs_31991 0 0 0 0 1 SASH1 chr6:148855116 5'GT 148855116 Upstream 66bp 29380 chr12 121854034 121854034 1 + G A rs555501715 121854035 + 121854015 121854055 41 GGGAACTGGAGCTGTCAGGGGCCAGCAGTCAGCATTTGCAG GGGAACTGGAGCTGTCAGGAGCCAGCAGTCAGCATTTGCAG < 41bp 0.530866584418246 0.737016500192055 NA NA prediction 0.412299831547617 Functional Gain - RNF34 ENSG00000170633 CDS Human protein_coding chr12:121854035 chr12:121854034 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_31992 0 0 1 0 1 RNF34 chr12:121853962 3'AG 121853962 Downstream 73bp 29381 chr3 128979575 128979575 1 + G T LUSC 128979576 + 128979556 128979596 41 TCACCACCCTCCTTAAGACGGGCAGCGAGAGCAGCATCGAC TCACCACCCTCCTTAAGACTGGCAGCGAGAGCAGCATCGAC < 41bp 0.709787343905175 0.915933949480858 NA NA prediction 0.412293211151367 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128979576 chr3:128979575 synonymous SNV . 0 20 hm7G_associated_SNPs_31994 0 0 1 0 1 COPG1 chr3:128979650 5'GT 128979650 Upstream 76bp 29382 chr21 47360075 47360075 1 + G A STAD 47360076 + 47360056 47360096 41 TCACCATCACGGGGACCCCGGCCAACATCAGCCTTGCCCAG TCACCATCACGGGGACCCCAGCCAACATCAGCCTTGCCCAG < 41bp 0.531551988594796 0.73769509813234 NA NA prediction 0.412286219075087 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47360076 chr21:47360075 synonymous SNV . 0 20 hm7G_associated_SNPs_31996 0 0 0 0 1 PCBP3 chr21:47360113 5'GT 47360113 Upstream 39bp 29383 chr4 5170126 5170126 1 + G T LUAD 5170127 + 5170107 5170147 41 GAGGTTCGGAATGTTTTCCGGGAGCTGCAGATCATGCAAGG GAGGTTCGGAATGTTTTCCTGGAGCTGCAGATCATGCAAGG < 41bp 0.375618872313369 0.706139842140777 NA NA prediction 0.412279684281555 Functional Gain - STK32B ENSG00000152953 CDS Human protein_coding chr4:5170127 chr4:5170126 nonsynonymous SNV 0.945 3 20 hm7G_associated_SNPs_31998 0 0 0 0 1 STK32B chr4:5170177 5'GT 5170177 Upstream 52bp 29384 chr5 176798570 176798570 1 + G A rs574681201 176798571 + 176798551 176798591 41 AGTAGTGCCACTGGAAAGCGGCAGACCTGTGACATCGAAGG AGTAGTGCCACTGGAAAGCAGCAGACCTGTGACATCGAAGG < 41bp 0.552839303817209 0.758975491590673 NA NA prediction 0.412272375546927 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176798571 chr5:176798570 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_32000 0 0 1 1 2 RGS14 chr5:176798476 3'AG 176798476 Downstream 95bp 29385 chr5 176798570 176798570 1 + G A rs574681201 176798571 + 176798551 176798591 41 AGTAGTGCCACTGGAAAGCGGCAGACCTGTGACATCGAAGG AGTAGTGCCACTGGAAAGCAGCAGACCTGTGACATCGAAGG < 41bp 0.552839303817209 0.758975491590673 NA NA prediction 0.412272375546927 Functional Gain - RGS14 ENSG00000169220 CDS Human protein_coding chr5:176798571 chr5:176798570 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_32000 0 0 1 1 2 RGS14 chr5:176798590 5'GT 176798590 Upstream 21bp 29386 chr17 4711607 4711607 1 + C T COAD 4711608 + 4711588 4711628 41 ATTCTGTCCGCTTGACTCACGGCGACTTTTCCTGGACAACC ATTCTGTCCGCTTGACTCATGGCGACTTTTCCTGGACAACC < 41bp 0.52698028440214 0.733110028450441 NA NA prediction 0.412259488096602 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4711608 chr17:4711607 synonymous SNV . 0 20 hm7G_associated_SNPs_32003 0 0 1 0 1 PLD2 chr17:4711569 3'AG 4711569 Downstream 39bp 29387 chr19 5724861 5724861 1 + G T UCEC 5724862 + 5724842 5724882 41 AAGTGTTTAATCTGATACAGGACGTTCAAGGGGTATGTGGC AAGTGTTTAATCTGATACATGACGTTCAAGGGGTATGTGGC < 41bp 0.377834312152024 0.706129731641164 NA NA prediction 0.412259463282328 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5724862 chr19:5724861 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_32004 0 0 0 0 2 CATSPERD chr19:5724819 3'AG 5724819 Downstream 43bp 29388 chr19 5724861 5724861 1 + G T UCEC 5724862 + 5724842 5724882 41 AAGTGTTTAATCTGATACAGGACGTTCAAGGGGTATGTGGC AAGTGTTTAATCTGATACATGACGTTCAAGGGGTATGTGGC < 41bp 0.377834312152024 0.706129731641164 NA NA prediction 0.412259463282328 Functional Gain - CATSPERD ENSG00000174898 CDS Human protein_coding chr19:5724862 chr19:5724861 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_32004 0 0 0 0 2 CATSPERD chr19:5724873 5'GT 5724873 Upstream 13bp 29389 chr1 227171527 227171527 1 + C T READ 227171528 + 227171508 227171548 41 CCTGGAGTGTGACTACCAGCGAGAGGCCGCCTGTGCCCGCA CCTGGAGTGTGACTACCAGTGAGAGGCCGCCTGTGCCCGCA < 41bp 0.501356681218953 0.707483164396244 NA NA prediction 0.412252966354583 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171528 chr1:227171527 stopgain 0.477 1 20 hm7G_associated_SNPs_32009 1 0 1 0 2 COQ8A chr1:227171462 3'AG 227171462 Downstream 66bp 29390 chr1 227171527 227171527 1 + C T READ 227171528 + 227171508 227171548 41 CCTGGAGTGTGACTACCAGCGAGAGGCCGCCTGTGCCCGCA CCTGGAGTGTGACTACCAGTGAGAGGCCGCCTGTGCCCGCA < 41bp 0.501356681218953 0.707483164396244 NA NA prediction 0.412252966354583 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227171528 chr1:227171527 stopgain 0.477 1 20 hm7G_associated_SNPs_32009 1 0 1 0 2 COQ8A chr1:227171555 5'GT 227171555 Upstream 29bp 29391 chr21 37650303 37650303 1 + C T HNSC 37650304 + 37650284 37650324 41 CCTCCTGGACATGGTTTATCGAAGTGATGAGAAGGAGAAAG CCTCCTGGACATGGTTTATTGAAGTGATGAGAAGGAGAAAG < 41bp 0.528152224898263 0.734276422436975 NA NA prediction 0.412248395077423 Functional Gain - DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37650304 chr21:37650303 stopgain 0.987 1 20 hm7G_associated_SNPs_32011 0 0 0 0 2 DOPEY2 chr21:37650273 3'AG 37650273 Downstream 31bp 29392 chr21 37650303 37650303 1 + C T HNSC 37650304 + 37650284 37650324 41 CCTCCTGGACATGGTTTATCGAAGTGATGAGAAGGAGAAAG CCTCCTGGACATGGTTTATTGAAGTGATGAGAAGGAGAAAG < 41bp 0.528152224898263 0.734276422436975 NA NA prediction 0.412248395077423 Functional Gain - DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37650304 chr21:37650303 stopgain 0.987 1 20 hm7G_associated_SNPs_32011 0 0 0 0 2 DOPEY2 chr21:37650382 5'GT 37650382 Upstream 80bp 29393 chr19 45317433 45317433 1 + G A OV 45317434 + 45317414 45317454 41 ACGGAGCACGTGCAGTTCTGGGTGGGCAGCCCGTCCACCCC ACGGAGCACGTGCAGTTCTAGGTGGGCAGCCCGTCCACCCC < 41bp 0.556969006586589 0.763091402163951 NA NA prediction 0.412244791154723 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45317434 chr19:45317433 stopgain 0.950 0 20 hm7G_associated_SNPs_32013 0 0 1 0 1 BCAM chr19:45317409 3'AG 45317409 Downstream 25bp 29394 chr3 126724029 126724029 1 + C T UCEC 126724030 + 126724010 126724050 41 GAGCGTCCTGGAGGATGGCCGGATCCACTGCCGCTCACCCT GAGCGTCCTGGAGGATGGCTGGATCCACTGCCGCTCACCCT < 41bp 0.53856774611715 0.744687636620986 NA NA prediction 0.412239781007673 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126724030 chr3:126724029 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_32015 0 0 1 0 1 PLXNA1 chr3:126723933 3'AG 126723933 Downstream 97bp 29395 chr11 65385099 65385099 1 + C T BLCA 65385100 + 65385080 65385120 41 AGACATCAAGGAGCTGGTGCGGGAGCAGGGCAGCAACAATG AGACATCAAGGAGCTGGTGTGGGAGCAGGGCAGCAACAATG < 41bp 0.522802277863671 0.72892070235574 NA NA prediction 0.412236848984137 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65385100 chr11:65385099 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_32016 0 0 1 0 2 PCNX3 chr11:65385082 3'AG 65385082 Downstream 18bp 29396 chr11 65385099 65385099 1 + C T BLCA 65385100 + 65385080 65385120 41 AGACATCAAGGAGCTGGTGCGGGAGCAGGGCAGCAACAATG AGACATCAAGGAGCTGGTGTGGGAGCAGGGCAGCAACAATG < 41bp 0.522802277863671 0.72892070235574 NA NA prediction 0.412236848984137 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65385100 chr11:65385099 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_32016 0 0 1 0 2 PCNX3 chr11:65385177 5'GT 65385177 Upstream 79bp 29397 chr1 31898637 31898637 1 + G A BRCA 31898638 + 31898618 31898658 41 CCCAGTCTGGTTCTACTTCGGCGTCGTGGGCTCCTTCCTCT CCCAGTCTGGTTCTACTTCAGCGTCGTGGGCTCCTTCCTCT < 41bp 0.480128271856252 0.706118213809857 NA NA prediction 0.412236427619714 Functional Gain - SERINC2 ENSG00000168528 CDS Human protein_coding chr1:31898638 chr1:31898637 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_32017 0 0 0 0 1 SERINC2 chr1:31898623 3'AG 31898623 Downstream 15bp 29398 chr11 60230005 60230005 1 + G T LUSC 60230006 + 60229986 60230026 41 AGGGAATCTAAGACTTTGGGGGTAAGTCAGTTGCCTTCCAT AGGGAATCTAAGACTTTGGTGGTAAGTCAGTTGCCTTCCAT < 41bp 0.363610708353185 0.706116014112128 NA NA prediction 0.412232028224255 Functional Gain - MS4A1 ENSG00000156738 CDS Human protein_coding chr11:60230006 chr11:60230005 nonsynonymous SNV 0.686 4 20 hm7G_associated_SNPs_32018 0 0 0 0 1 MS4A1 chr11:60230006 5'GT 60230006 Upstream 2bp 29399 chr7 44734049 44734049 1 + C T rs199871931 44734050 + 44734030 44734070 41 ACCGGCGCAACGGCCACAACGAGATGGATGAGCCCATGTTC ACCGGCGCAACGGCCACAATGAGATGGATGAGCCCATGTTC < 41bp 0.503417925713348 0.709530860477751 NA NA prediction 0.412225869528805 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44734050 chr7:44734049 synonymous SNV . 0 20 hm7G_associated_SNPs_32019 0 0 0 0 1 OGDH chr7:44734023 3'AG 44734023 Downstream 27bp 29400 chr1 3394464 3394464 1 + G A rs190407416 3394465 + 3394445 3394485 41 CCACTGATCTCTGCCTCCCGGTGGCTGCTGAAGCGCGGAGA CCACTGATCTCTGCCTCCCAGTGGCTGCTGAAGCGCGGAGA < 41bp 0.541956119202334 0.748068952911649 NA NA prediction 0.412225667418631 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3394465 chr1:3394464 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_32020 0 0 1 0 1 ARHGEF16 chr1:3394439 3'AG 3394439 Downstream 26bp 29401 chr16 67859094 67859094 1 + C T UCEC 67859095 + 67859075 67859115 41 CCTGCACTACCTCAGTGAGCGAGATGCCTGTAAGATCCTCA CCTGCACTACCTCAGTGAGTGAGATGCCTGTAAGATCCTCA < 41bp 0.521102660652197 0.7272146025248 NA NA prediction 0.412223883745206 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859095 chr16:67859094 stopgain 0.970 0 20 hm7G_associated_SNPs_32021 0 0 0 0 2 TSNAXIP1 chr16:67859040 3'AG 67859040 Downstream 55bp 29402 chr16 67859094 67859094 1 + C T UCEC 67859095 + 67859075 67859115 41 CCTGCACTACCTCAGTGAGCGAGATGCCTGTAAGATCCTCA CCTGCACTACCTCAGTGAGTGAGATGCCTGTAAGATCCTCA < 41bp 0.521102660652197 0.7272146025248 NA NA prediction 0.412223883745206 Functional Gain - TSNAXIP1 ENSG00000102904 CDS Human protein_coding chr16:67859095 chr16:67859094 stopgain 0.970 0 20 hm7G_associated_SNPs_32021 0 0 0 0 2 TSNAXIP1 chr16:67859175 5'GT 67859175 Upstream 82bp 29403 chr16 67683205 67683205 1 + C T COAD 67683206 + 67683186 67683226 41 TTGTCCAGCTCATGCAGGACGACGATTGTGTGAGTTCACGG TTGTCCAGCTCATGCAGGATGACGATTGTGTGAGTTCACGG < 41bp 0.512658358678535 0.718769736242986 NA NA prediction 0.412222755128902 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67683206 chr16:67683205 synonymous SNV . 0 20 hm7G_associated_SNPs_32023 0 0 0 0 2 CARMIL2 chr16:67683157 3'AG 67683157 Downstream 49bp 29404 chr16 67683205 67683205 1 + C T COAD 67683206 + 67683186 67683226 41 TTGTCCAGCTCATGCAGGACGACGATTGTGTGAGTTCACGG TTGTCCAGCTCATGCAGGATGACGATTGTGTGAGTTCACGG < 41bp 0.512658358678535 0.718769736242986 NA NA prediction 0.412222755128902 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67683206 chr16:67683205 synonymous SNV . 0 20 hm7G_associated_SNPs_32023 0 0 0 0 2 CARMIL2 chr16:67683214 5'GT 67683214 Upstream 10bp 29405 chr8 37691228 37691228 1 + C T STAD 37691229 + 37691209 37691249 41 CCCATCAATGCCTCCAATGCGCTGACCCTGGCTCACCAGCT CCCATCAATGCCTCCAATGTGCTGACCCTGGCTCACCAGCT < 41bp 0.49272476800539 0.706110677330012 NA NA prediction 0.412221354660025 Functional Gain - ADGRA2 ENSG00000020181 CDS Human protein_coding chr8:37691229 chr8:37691228 nonsynonymous SNV 0.840 1 20 hm7G_associated_SNPs_32024 0 0 0 0 1 ADGRA2 chr8:37691206 3'AG 37691206 Downstream 23bp 29406 chr4 145568084 145568084 1 + G A SKCM 145568085 + 145568065 145568105 41 CTGCGGAGTGACAGCCCGGGGCTAGGGCGCCTGGAGAATAA CTGCGGAGTGACAGCCCGGAGCTAGGGCGCCTGGAGAATAA < 41bp 0.537617887454943 0.743728216333429 NA NA prediction 0.412220657756972 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145568085 chr4:145568084 nonsynonymous SNV 0.975 0 20 hm7G_associated_SNPs_32025 0 0 0 0 1 HHIP chr4:145568106 5'GT 145568106 Upstream 23bp 29407 chr16 50659473 50659473 1 + C T HNSC 50659474 + 50659454 50659494 41 TGTATGACTTTGACAACAACGGCAAGGTCACCCGAGAGGTG TGTATGACTTTGACAACAATGGCAAGGTCACCCGAGAGGTG < 41bp 0.5330948095328 0.73919939414483 NA NA prediction 0.412209169224059 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50659474 chr16:50659473 synonymous SNV . 0 20 hm7G_associated_SNPs_32026 0 0 1 0 2 NKD1 chr16:50659396 3'AG 50659396 Downstream 78bp 29408 chr16 50659473 50659473 1 + C T HNSC 50659474 + 50659454 50659494 41 TGTATGACTTTGACAACAACGGCAAGGTCACCCGAGAGGTG TGTATGACTTTGACAACAATGGCAAGGTCACCCGAGAGGTG < 41bp 0.5330948095328 0.73919939414483 NA NA prediction 0.412209169224059 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50659474 chr16:50659473 synonymous SNV . 0 20 hm7G_associated_SNPs_32026 0 0 1 0 2 NKD1 chr16:50659491 5'GT 50659491 Upstream 19bp 29409 chrX 129042647 129042647 1 + C T LGG 129042648 + 129042628 129042668 41 CGTTTTGCCTAATTTCAGGCGGAAATTGGCTGAGAGGTCTG CGTTTTGCCTAATTTCAGGTGGAAATTGGCTGAGAGGTCTG < 41bp 0.504388704051437 0.710491701714061 NA NA prediction 0.412205995325247 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129042648 chrX:129042647 nonsynonymous SNV 0.930 0 20 hm7G_associated_SNPs_32028 0 0 1 0 2 UTP14A chrX:129042646 3'AG 129042646 Downstream 2bp 29410 chrX 129042647 129042647 1 + C T LGG 129042648 + 129042628 129042668 41 CGTTTTGCCTAATTTCAGGCGGAAATTGGCTGAGAGGTCTG CGTTTTGCCTAATTTCAGGTGGAAATTGGCTGAGAGGTCTG < 41bp 0.504388704051437 0.710491701714061 NA NA prediction 0.412205995325247 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129042648 chrX:129042647 nonsynonymous SNV 0.930 0 20 hm7G_associated_SNPs_32028 0 0 1 0 2 UTP14A chrX:129042710 5'GT 129042710 Upstream 64bp 29411 chr12 50452821 50452821 1 + C T COAD 50452822 + 50452802 50452842 41 CTTACCTTCCCTGCTGTCACGCTGTGCAACCTCAACGAGTT CTTACCTTCCCTGCTGTCATGCTGTGCAACCTCAACGAGTT < 41bp 0.503029689187509 0.709129966704049 NA NA prediction 0.412200555033079 Functional Gain - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452822 chr12:50452821 nonsynonymous SNV 0.973 3 20 hm7G_associated_SNPs_32029 0 0 0 0 1 ASIC1 chr12:50452911 5'GT 50452911 Upstream 91bp 29412 chr2 95542316 95542316 1 + G A MESO 95542317 + 95542297 95542337 41 GGCTGTTGAGTGAGGTGGAGGAGCTGAACATGTCCCTCACA GGCTGTTGAGTGAGGTGGAAGAGCTGAACATGTCCCTCACA < 41bp 0.509578941481589 0.71567920134404 NA NA prediction 0.412200519724902 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95542317 chr2:95542316 synonymous SNV . 0 20 hm7G_associated_SNPs_32030 0 0 0 1 1 TEKT4 chr2:95542298 3'AG 95542298 Downstream 19bp 29413 chr19 19360595 19360595 1 + C T COAD 19360596 + 19360576 19360616 41 CAGACGTTCACATCGGATGCGGCGACACCACCACCACCACC CAGACGTTCACATCGGATGTGGCGACACCACCACCACCACC < 41bp 0.527369962288608 0.733467669432595 NA NA prediction 0.412195414287973 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19360596 chr19:19360595 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_32031 0 0 0 0 1 NCAN chr19:19360575 3'AG 19360575 Downstream 21bp 29414 chr5 61789861 61789861 1 + C T LUSC 61789862 + 61789842 61789882 41 GCAGGGTGATTTGGCTCATCGGTCAGTGGATTTCTGTGAAA GCAGGGTGATTTGGCTCATTGGTCAGTGGATTTCTGTGAAA < 41bp 0.508927407809813 0.715024309291577 NA NA prediction 0.412193802963528 Functional Gain - IPO11 ENSG00000086200 CDS Human protein_coding chr5:61789862 chr5:61789861 synonymous SNV . 0 20 hm7G_associated_SNPs_32032 0 0 1 0 2 IPO11 chr5:61789825 3'AG 61789825 Downstream 37bp 29415 chr5 61789861 61789861 1 + C T LUSC 61789862 + 61789842 61789882 41 GCAGGGTGATTTGGCTCATCGGTCAGTGGATTTCTGTGAAA GCAGGGTGATTTGGCTCATTGGTCAGTGGATTTCTGTGAAA < 41bp 0.508927407809813 0.715024309291577 NA NA prediction 0.412193802963528 Functional Gain - IPO11 ENSG00000086200 CDS Human protein_coding chr5:61789862 chr5:61789861 synonymous SNV . 0 20 hm7G_associated_SNPs_32032 0 0 1 0 2 IPO11 chr5:61789951 5'GT 61789951 Upstream 91bp 29416 chr1 11886266 11886266 1 + C T UCEC 11886267 + 11886247 11886287 41 ACTTCCCCTATTTCCGAAGCGACAGGTATGGAAAGGTTAGA ACTTCCCCTATTTCCGAAGTGACAGGTATGGAAAGGTTAGA < 41bp 0.491717101097495 0.706094333941339 NA NA prediction 0.412188667882678 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11886267 chr1:11886266 synonymous SNV . 0 20 hm7G_associated_SNPs_32033 0 0 1 0 3 CLCN6 chr1:11886213 3'AG 11886213 Downstream 54bp 29417 chr1 11886266 11886266 1 + C T UCEC 11886267 + 11886247 11886287 41 ACTTCCCCTATTTCCGAAGCGACAGGTATGGAAAGGTTAGA ACTTCCCCTATTTCCGAAGTGACAGGTATGGAAAGGTTAGA < 41bp 0.491717101097495 0.706094333941339 NA NA prediction 0.412188667882678 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11886267 chr1:11886266 synonymous SNV . 0 20 hm7G_associated_SNPs_32033 0 0 1 0 3 CLCN6 chr1:11886271 5'GT 11886271 Upstream 6bp 29418 chr1 11886266 11886266 1 + C T UCEC 11886267 + 11886247 11886287 41 ACTTCCCCTATTTCCGAAGCGACAGGTATGGAAAGGTTAGA ACTTCCCCTATTTCCGAAGTGACAGGTATGGAAAGGTTAGA < 41bp 0.491717101097495 0.706094333941339 NA NA prediction 0.412188667882678 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11886267 chr1:11886266 synonymous SNV . 0 20 hm7G_associated_SNPs_32033 0 0 1 0 3 CLCN6 chr1:11886281 5'GT 11886281 Upstream 16bp 29419 chr19 7572003 7572003 1 + G A rs146826383 7572004 + 7571984 7572024 41 ACAGAACACCTCCGGCCCCGGTGACTGAAGAGATGCTACAG ACAGAACACCTCCGGCCCCAGTGACTGAAGAGATGCTACAG < 41bp 0.535887827901115 0.741982075793984 NA NA prediction 0.412188495785738 Functional Gain - TEX45 ENSG00000198723;ENSG00000267952 CDS Human protein_coding chr19:7572004 chr19:7572003 synonymous SNV . 0 20 hm7G_associated_SNPs_32034 0 0 0 0 2 TEX45 chr19:7571942 3'AG 7571942 Downstream 62bp 29420 chr19 7572003 7572003 1 + G A rs146826383 7572004 + 7571984 7572024 41 ACAGAACACCTCCGGCCCCGGTGACTGAAGAGATGCTACAG ACAGAACACCTCCGGCCCCAGTGACTGAAGAGATGCTACAG < 41bp 0.535887827901115 0.741982075793984 NA NA prediction 0.412188495785738 Functional Gain - TEX45 ENSG00000198723;ENSG00000267952 CDS Human other chr19:7572004 chr19:7572003 synonymous SNV . 0 20 hm7G_associated_SNPs_32034 0 0 0 0 2 TEX45 chr19:7572027 5'GT 7572027 Upstream 25bp 29421 chr9 135114495 135114495 1 + C T COAD 135114496 + 135114476 135114516 41 ACTTGGCCGGCCCAGACTGCGAATGCTACGGTCACTCCAAC ACTTGGCCGGCCCAGACTGTGAATGCTACGGTCACTCCAAC < 41bp 0.52443366382666 0.730527775129545 NA NA prediction 0.412188222605769 Functional Gain - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135114496 chr9:135114495 synonymous SNV . 0 20 hm7G_associated_SNPs_32035 0 0 0 0 1 NTNG2 chr9:135114491 3'AG 135114491 Downstream 5bp 29422 chrX 79278624 79278624 1 + G A UCEC 79278625 + 79278605 79278645 41 CGGCAGCGACAGCGGCTACGGCAACAGCTCTGAAAGTCTGG CGGCAGCGACAGCGGCTACAGCAACAGCTCTGAAAGTCTGG < 41bp 0.489461571625756 0.70609012226503 NA NA prediction 0.412180244530059 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79278625 chrX:79278624 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_32037 0 0 0 0 1 TBX22 chrX:79278559 3'AG 79278559 Downstream 66bp 29423 chr17 48601096 48601096 1 + C T rs78242165 48601097 + 48601077 48601117 41 CTGCAGGTCAATCTCCACGCGGTCTCCCTGACCCAGGACGT CTGCAGGTCAATCTCCACGTGGTCTCCCTGACCCAGGACGT < 41bp 0.495915905934283 0.706087265973398 NA NA prediction 0.412174531946796 Functional Gain - MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48601097 chr17:48601096 nonsynonymous SNV 0.029 3 20 hm7G_associated_SNPs_32038 0 0 0 0 1 MYCBPAP chr17:48601145 5'GT 48601145 Upstream 50bp 29424 chr10 7773844 7773844 1 + C T LUSC 7773845 + 7773825 7773865 41 TATCCCCATACATCAGTCACGGACGTCACTCAAAACAATTT TATCCCCATACATCAGTCATGGACGTCACTCAAAACAATTT < 41bp 0.509470897733924 0.715555043113937 NA NA prediction 0.412168290760026 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7773845 chr10:7773844 nonsynonymous SNV 0.349 1 20 hm7G_associated_SNPs_32041 0 0 1 0 1 ITIH2 chr10:7773774 3'AG 7773774 Downstream 71bp 29425 chr9 43861018 43861018 1 + C T COAD 43861019 + 43860999 43861039 41 TCAGCAGACTCCGCGTGGACGGTGGTGCGGCACGGTGGCCC TCAGCAGACTCCGCGTGGATGGTGGTGCGGCACGGTGGCCC < 41bp 0.52019142251392 0.726275470223587 NA NA prediction 0.412168095419335 Functional Gain - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861019 chr9:43861018 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_32042 0 0 0 0 2 CNTNAP3B chr9:43861003 3'AG 43861003 Downstream 16bp 29426 chr9 43861018 43861018 1 + C T COAD 43861019 + 43860999 43861039 41 TCAGCAGACTCCGCGTGGACGGTGGTGCGGCACGGTGGCCC TCAGCAGACTCCGCGTGGATGGTGGTGCGGCACGGTGGCCC < 41bp 0.52019142251392 0.726275470223587 NA NA prediction 0.412168095419335 Functional Gain - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861019 chr9:43861018 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_32042 0 0 0 0 2 CNTNAP3B chr9:43861006 3'AG 43861006 Downstream 13bp 29427 chr19 49459528 49459528 1 + G T LAML 49459529 + 49459509 49459549 41 AGCTGACATGTTTTCTGACGGCAACTTCAACTGGGGCCGGG AGCTGACATGTTTTCTGACTGCAACTTCAACTGGGGCCGGG < 41bp 0.704267440342373 0.910349209123426 NA NA prediction 0.412163537562106 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459529 chr19:49459528 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_32043 0 0 1 0 2 BAX chr19:49459455 3'AG 49459455 Downstream 74bp 29428 chr19 49459528 49459528 1 + G T LAML 49459529 + 49459509 49459549 41 AGCTGACATGTTTTCTGACGGCAACTTCAACTGGGGCCGGG AGCTGACATGTTTTCTGACTGCAACTTCAACTGGGGCCGGG < 41bp 0.704267440342373 0.910349209123426 NA NA prediction 0.412163537562106 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459529 chr19:49459528 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_32043 0 0 1 0 2 BAX chr19:49459590 5'GT 49459590 Upstream 63bp 29429 chr12 85517935 85517935 1 + C T READ 85517936 + 85517916 85517956 41 CTGAATACCGACATGCACACGAACGAGGGGATGTAACTATC CTGAATACCGACATGCACATGAACGAGGGGATGTAACTATC < 41bp 0.50012992932308 0.70621089820588 NA NA prediction 0.412161937765601 Functional Gain - LRRIQ1 ENSG00000133640 CDS Human protein_coding chr12:85517936 chr12:85517935 synonymous SNV . 0 20 hm7G_associated_SNPs_32044 0 0 0 0 1 LRRIQ1 chr12:85517848 3'AG 85517848 Downstream 88bp 29430 chr11 61488178 61488178 1 + C T COAD 61488179 + 61488159 61488199 41 TCCTGTCCGTGGTGCTCTTCGGCCTGGTCTATAACCCGCAC TCCTGTCCGTGGTGCTCTTTGGCCTGGTCTATAACCCGCAC < 41bp 0.512624925402754 0.718704513286191 NA NA prediction 0.412159175766874 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61488179 chr11:61488178 synonymous SNV . 0 20 hm7G_associated_SNPs_32046 0 0 1 0 1 DAGLA chr11:61488151 3'AG 61488151 Downstream 28bp 29431 chrX 135291510 135291510 1 + G A CESC 135291511 + 135291491 135291531 41 TTTCCCAGCGCCAACCTCCGGGGCAGGCATCCGGGTGGAGA TTTCCCAGCGCCAACCTCCAGGGCAGGCATCCGGGTGGAGA < 41bp 0.511215502776057 0.717295049238076 NA NA prediction 0.412159092924038 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135291511 chrX:135291510 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_32047 1 0 1 0 1 FHL1 chrX:135291601 5'GT 135291601 Upstream 92bp 29432 chr11 125255525 125255525 1 + C T LUAD 125255526 + 125255506 125255546 41 GCTCTGAGTGCATCACCTCCGCCAGCTTTGATGTGGACATC GCTCTGAGTGCATCACCTCTGCCAGCTTTGATGTGGACATC < 41bp 0.505078188992918 0.711157430547012 NA NA prediction 0.412158483108188 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125255526 chr11:125255525 synonymous SNV . 0 20 hm7G_associated_SNPs_32048 0 0 0 0 2 PKNOX2 chr11:125255447 3'AG 125255447 Downstream 79bp 29433 chr11 125255525 125255525 1 + C T LUAD 125255526 + 125255506 125255546 41 GCTCTGAGTGCATCACCTCCGCCAGCTTTGATGTGGACATC GCTCTGAGTGCATCACCTCTGCCAGCTTTGATGTGGACATC < 41bp 0.505078188992918 0.711157430547012 NA NA prediction 0.412158483108188 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125255526 chr11:125255525 synonymous SNV . 0 20 hm7G_associated_SNPs_32048 0 0 0 0 2 PKNOX2 chr11:125255618 5'GT 125255618 Upstream 94bp 29434 chr9 130219611 130219611 1 + C T UCEC 130219612 + 130219592 130219632 41 CAGGTGCTGATCGTCCACACGAATCACCTCACTTCCCTGCT CAGGTGCTGATCGTCCACATGAATCACCTCACTTCCCTGCT < 41bp 0.520769071653654 0.726847560392658 NA NA prediction 0.412156977478008 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130219612 chr9:130219611 nonsynonymous SNV 0.181 3 20 hm7G_associated_SNPs_32049 0 0 1 0 2 LRSAM1 chr9:130219595 3'AG 130219595 Downstream 17bp 29435 chr9 130219611 130219611 1 + C T UCEC 130219612 + 130219592 130219632 41 CAGGTGCTGATCGTCCACACGAATCACCTCACTTCCCTGCT CAGGTGCTGATCGTCCACATGAATCACCTCACTTCCCTGCT < 41bp 0.520769071653654 0.726847560392658 NA NA prediction 0.412156977478008 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130219612 chr9:130219611 nonsynonymous SNV 0.181 3 20 hm7G_associated_SNPs_32049 0 0 1 0 2 LRSAM1 chr9:130219672 5'GT 130219672 Upstream 62bp 29436 chr19 56012112 56012112 1 + C T rs189356192 56012113 + 56012093 56012133 41 TCACTGAGCGACTGCCCCTCGGGGGCTTGGGGGAAGCACAA TCACTGAGCGACTGCCCCTTGGGGGCTTGGGGGAAGCACAA < 41bp 0.518700829650014 0.724774540555038 NA NA prediction 0.412147421810047 Functional Gain - SSC5D ENSG00000179954 CDS Human protein_coding chr19:56012113 chr19:56012112 nonsynonymous SNV 0.010 2 20 hm7G_associated_SNPs_32052 0 0 0 0 1 SSC5D chr19:56012171 5'GT 56012171 Upstream 60bp 29437 chr10 7759731 7759731 1 + C T COAD 7759732 + 7759712 7759752 41 GATCTATCTGCAACCTGGACGGCTGGCCAAACACTTAGAGG GATCTATCTGCAACCTGGATGGCTGGCCAAACACTTAGAGG < 41bp 0.522848692912975 0.728920810110016 NA NA prediction 0.412144234394082 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7759732 chr10:7759731 nonsynonymous SNV 0.453 4 20 hm7G_associated_SNPs_32053 0 0 1 0 1 ITIH2 chr10:7759751 5'GT 7759751 Upstream 21bp 29438 chr5 80409671 80409671 1 + C T STAD 80409672 + 80409652 80409692 41 CCAGAGCAAAGCCCGGGAACGGTAGAAGAGAATGTCGATAA CCAGAGCAAAGCCCGGGAATGGTAGAAGAGAATGTCGATAA < 41bp 0.509597276700051 0.715663279211308 NA NA prediction 0.412132005022515 Functional Gain - RASGRF2 ENSG00000113319 CDS Human protein_coding chr5:80409672 chr5:80409671 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_32056 0 0 0 0 1 RASGRF2 chr5:80409739 5'GT 80409739 Upstream 69bp 29439 chr10 99510179 99510179 1 + G A OV 99510180 + 99510160 99510200 41 CTCCACCACCAGATGTTGGGGGGAAGGATGGTCTGATGGAC CTCCACCACCAGATGTTGGAGGGAAGGATGGTCTGATGGAC < 41bp 0.519732160824888 0.725795055527051 NA NA prediction 0.412125789404326 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99510180 chr10:99510179 synonymous SNV . 0 20 hm7G_associated_SNPs_32057 0 0 1 0 2 ZFYVE27 chr10:99510088 3'AG 99510088 Downstream 92bp 29440 chr10 99510179 99510179 1 + G A OV 99510180 + 99510160 99510200 41 CTCCACCACCAGATGTTGGGGGGAAGGATGGTCTGATGGAC CTCCACCACCAGATGTTGGAGGGAAGGATGGTCTGATGGAC < 41bp 0.519732160824888 0.725795055527051 NA NA prediction 0.412125789404326 Functional Gain - ZFYVE27 ENSG00000155256 CDS Human protein_coding chr10:99510180 chr10:99510179 synonymous SNV . 0 20 hm7G_associated_SNPs_32057 0 0 1 0 2 ZFYVE27 chr10:99510227 5'GT 99510227 Upstream 49bp 29441 chr1 36354210 36354210 1 + C T UCEC 36354211 + 36354191 36354231 41 GTGTCCCCGTAGAGTCAACCGGTAAGTGATGCACACCTAAG GTGTCCCCGTAGAGTCAACTGGTAAGTGATGCACACCTAAG < 41bp 0.539341804354531 0.74540462133518 NA NA prediction 0.412125633961299 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36354211 chr1:36354210 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32058 0 0 1 0 1 AGO1 chr1:36354211 5'GT 36354211 Upstream 2bp 29442 chr19 13910669 13910669 1 + C T UCEC 13910670 + 13910650 13910690 41 AGAGGGCGAGCACGATGCCCGGGTGCCCTTTACCCGCGGGC AGAGGGCGAGCACGATGCCTGGGTGCCCTTTACCCGCGGGC < 41bp 0.505458659134856 0.711520381369331 NA NA prediction 0.41212344446895 Functional Gain - ZSWIM4 ENSG00000132003 CDS Human protein_coding chr19:13910670 chr19:13910669 nonsynonymous SNV 0.973 3 20 hm7G_associated_SNPs_32059 0 0 0 0 1 ZSWIM4 chr19:13910735 5'GT 13910735 Upstream 67bp 29443 chr14 23355315 23355315 1 + G A UCEC 23355316 + 23355296 23355336 41 TTCTCAGTCACCGACCGACGGAGTTTCTCCAAAGTTCCAGA TTCTCAGTCACCGACCGACAGAGTTTCTCCAAAGTTCCAGA < 41bp 0.492326514466747 0.706061515495805 NA NA prediction 0.412123030991609 Functional Gain - REM2 ENSG00000139890 CDS Human protein_coding chr14:23355316 chr14:23355315 nonsynonymous SNV 0.851 0 20 hm7G_associated_SNPs_32060 0 0 0 0 1 REM2 chr14:23355233 3'AG 23355233 Downstream 83bp 29444 chr20 31622587 31622587 1 + G A SKCM 31622588 + 31622568 31622608 41 GCTTCATGGGAGGGAACATGGAGATCATCGTGGCCCTGAAC GCTTCATGGGAGGGAACATAGAGATCATCGTGGCCCTGAAC < 41bp 0.534075285656053 0.740135469441582 NA NA prediction 0.412120367571057 Functional Gain - BPIFB6 ENSG00000167104 CDS Human protein_coding chr20:31622588 chr20:31622587 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_32062 0 0 0 0 1 BPIFB6 chr20:31622569 3'AG 31622569 Downstream 19bp 29445 chr16 57786711 57786711 1 + C T rs2965798 57786712 + 57786692 57786732 41 GCGTCCTCTTCAACCCAGACGGCTGCTGCCTGTACAGCGGC GCGTCCTCTTCAACCCAGATGGCTGCTGCCTGTACAGCGGC < 41bp 0.535258870691654 0.74131788446587 NA NA prediction 0.412118027548432 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57786712 chr16:57786711 synonymous SNV . 0 20 hm7G_associated_SNPs_32063 0 0 1 0 1 KATNB1 chr16:57786690 3'AG 57786690 Downstream 22bp 29446 chr17 55058576 55058576 1 + G T STAD 55058577 + 55058557 55058597 41 ACTTCTCAGAACTGCCCCTGGTCATGTGGCTTCAGGTAAAG ACTTCTCAGAACTGCCCCTTGTCATGTGGCTTCAGGTAAAG < 41bp 0.359632022186751 0.706055328303283 NA NA prediction 0.412110656606566 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55058577 chr17:55058576 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_32064 0 0 1 0 2 SCPEP1 chr17:55058478 3'AG 55058478 Downstream 99bp 29447 chr17 55058576 55058576 1 + G T STAD 55058577 + 55058557 55058597 41 ACTTCTCAGAACTGCCCCTGGTCATGTGGCTTCAGGTAAAG ACTTCTCAGAACTGCCCCTTGTCATGTGGCTTCAGGTAAAG < 41bp 0.359632022186751 0.706055328303283 NA NA prediction 0.412110656606566 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55058577 chr17:55058576 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_32064 0 0 1 0 2 SCPEP1 chr17:55058591 5'GT 55058591 Upstream 16bp 29448 chr14 76330023 76330023 1 + G T LUAD 76330024 + 76330004 76330044 41 CTTCAGGAGCCTGCAGACAGGGGGATTTGCCTGGGAAGGAG CTTCAGGAGCCTGCAGACATGGGGATTTGCCTGGGAAGGAG < 41bp 0.367385511073832 0.706052742981043 NA NA prediction 0.412105485962086 Functional Gain - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76330024 chr14:76330023 nonsynonymous SNV 0.918 3 20 hm7G_associated_SNPs_32065 0 0 1 0 1 TTLL5 chr14:76330010 3'AG 76330010 Downstream 14bp 29449 chr21 47766871 47766871 1 + G A UCEC 47766872 + 47766852 47766892 41 CTCAGGGAGCAGCACGCACGGGAGAAGGAGGAGGTGGTGCT CTCAGGGAGCAGCACGCACAGGAGAAGGAGGAGGTGGTGCT < 41bp 0.520662404786296 0.726711769287187 NA NA prediction 0.412098729001782 Functional Gain - PCNT ENSG00000160299 CDS Human protein_coding chr21:47766872 chr21:47766871 nonsynonymous SNV 0.190 1 20 hm7G_associated_SNPs_32067 0 0 1 0 2 PCNT chr21:47766895 5'GT 47766895 Upstream 25bp 29450 chr21 47766871 47766871 1 + G A UCEC 47766872 + 47766852 47766892 41 CTCAGGGAGCAGCACGCACGGGAGAAGGAGGAGGTGGTGCT CTCAGGGAGCAGCACGCACAGGAGAAGGAGGAGGTGGTGCT < 41bp 0.520662404786296 0.726711769287187 NA NA prediction 0.412098729001782 Functional Gain - PCNT ENSG00000160299 CDS Human protein_coding chr21:47766872 chr21:47766871 nonsynonymous SNV 0.190 1 20 hm7G_associated_SNPs_32067 0 0 1 0 2 PCNT chr21:47766912 5'GT 47766912 Upstream 42bp 29451 chr20 49195776 49195776 1 + G T SKCM 49195777 + 49195757 49195797 41 AAATGAGGAAGTTTCGGATGGGGCTGATCCAGACAGCCGAC AAATGAGGAAGTTTCGGATTGGGCTGATCCAGACAGCCGAC < 41bp 0.709916882680213 0.915957157021025 NA NA prediction 0.412080548681624 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195777 chr20:49195776 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_32069 0 0 1 0 2 PTPN1 chr20:49195705 3'AG 49195705 Downstream 72bp 29452 chr20 49195776 49195776 1 + G T SKCM 49195777 + 49195757 49195797 41 AAATGAGGAAGTTTCGGATGGGGCTGATCCAGACAGCCGAC AAATGAGGAAGTTTCGGATTGGGCTGATCCAGACAGCCGAC < 41bp 0.709916882680213 0.915957157021025 NA NA prediction 0.412080548681624 Functional Gain - PTPN1 ENSG00000196396 CDS Human protein_coding chr20:49195777 chr20:49195776 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_32069 0 0 1 0 2 PTPN1 chr20:49195866 5'GT 49195866 Upstream 91bp 29453 chr16 50344747 50344747 1 + C T UCEC 50344748 + 50344728 50344768 41 GCTGGCAGTGGGACTGCTGCGGCCAAGGCCTGGGCAACCTC GCTGGCAGTGGGACTGCTGTGGCCAAGGCCTGGGCAACCTC < 41bp 0.525741902285735 0.731781067750251 NA NA prediction 0.412078330929033 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50344748 chr16:50344747 synonymous SNV . 0 20 hm7G_associated_SNPs_32070 0 0 1 0 1 ADCY7 chr16:50344791 5'GT 50344791 Upstream 45bp 29454 chr10 121429450 121429450 1 + C T SKCM 121429451 + 121429431 121429471 41 CCCTGTGTACCCCCAGCTCCGACCAGGCTACATTCCCATTC CCCTGTGTACCCCCAGCTCTGACCAGGCTACATTCCCATTC < 41bp 0.497784347115818 0.706037496694839 NA NA prediction 0.412074993389679 Functional Gain - BAG3 ENSG00000151929 CDS Human protein_coding chr10:121429451 chr10:121429450 stopgain 0.991 1 20 hm7G_associated_SNPs_32071 2 0 1 0 1 BAG3 chr10:121429363 3'AG 121429363 Downstream 88bp 29455 chr17 41059630 41059630 1 + C T LGG 41059631 + 41059611 41059651 41 TTTCAGGGAAAGATAAAGCCGACCTACAGATTTCGGTAAGA TTTCAGGGAAAGATAAAGCTGACCTACAGATTTCGGTAAGA < 41bp 0.505030861325752 0.711067301818482 NA NA prediction 0.41207288098546 Functional Gain - G6PC ENSG00000131482 CDS Human protein_coding chr17:41059631 chr17:41059630 nonsynonymous SNV 0.094 0 20 hm7G_associated_SNPs_32072 0 0 1 0 3 G6PC chr17:41059540 3'AG 41059540 Downstream 91bp 29456 chr17 41059630 41059630 1 + C T LGG 41059631 + 41059611 41059651 41 TTTCAGGGAAAGATAAAGCCGACCTACAGATTTCGGTAAGA TTTCAGGGAAAGATAAAGCTGACCTACAGATTTCGGTAAGA < 41bp 0.505030861325752 0.711067301818482 NA NA prediction 0.41207288098546 Functional Gain - G6PC ENSG00000131482 CDS Human protein_coding chr17:41059631 chr17:41059630 nonsynonymous SNV 0.094 0 20 hm7G_associated_SNPs_32072 0 0 1 0 3 G6PC chr17:41059617 3'AG 41059617 Downstream 14bp 29457 chr17 41059630 41059630 1 + C T LGG 41059631 + 41059611 41059651 41 TTTCAGGGAAAGATAAAGCCGACCTACAGATTTCGGTAAGA TTTCAGGGAAAGATAAAGCTGACCTACAGATTTCGGTAAGA < 41bp 0.505030861325752 0.711067301818482 NA NA prediction 0.41207288098546 Functional Gain - G6PC ENSG00000131482 CDS Human protein_coding chr17:41059631 chr17:41059630 nonsynonymous SNV 0.094 0 20 hm7G_associated_SNPs_32072 0 0 1 0 3 G6PC chr17:41059645 5'GT 41059645 Upstream 16bp 29458 chr15 41862464 41862464 1 + G A LUAD 41862465 + 41862445 41862485 41 TTTGACAGTGTCATGGCCCGGGGAGAGCCAGCCGTTCACTT TTTGACAGTGTCATGGCCCAGGGAGAGCCAGCCGTTCACTT < 41bp 0.530421962131134 0.736457635597826 NA NA prediction 0.412071346933384 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862465 chr15:41862464 nonsynonymous SNV 0.967 0 20 hm7G_associated_SNPs_32073 0 0 1 0 2 TYRO3 chr15:41862438 3'AG 41862438 Downstream 27bp 29459 chr15 41862464 41862464 1 + G A LUAD 41862465 + 41862445 41862485 41 TTTGACAGTGTCATGGCCCGGGGAGAGCCAGCCGTTCACTT TTTGACAGTGTCATGGCCCAGGGAGAGCCAGCCGTTCACTT < 41bp 0.530421962131134 0.736457635597826 NA NA prediction 0.412071346933384 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41862465 chr15:41862464 nonsynonymous SNV 0.967 0 20 hm7G_associated_SNPs_32073 0 0 1 0 2 TYRO3 chr15:41862538 5'GT 41862538 Upstream 75bp 29460 chr3 12856710 12856710 1 + C T CESC 12856711 + 12856691 12856731 41 GGGCAGCTGCCAAGTGCATCGCAGCCTTGATCAGCTCGCGG GGGCAGCTGCCAAGTGCATTGCAGCCTTGATCAGCTCGCGG < 41bp 0.54257884332154 0.748614295957861 NA NA prediction 0.412070905272641 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12856711 chr3:12856710 synonymous SNV . 0 20 hm7G_associated_SNPs_32074 0 0 0 0 1 CAND2 chr3:12856640 3'AG 12856640 Downstream 71bp 29461 chr6 31783698 31783698 1 - C T rs368717500 31783697 - 31783677 31783717 41 TCAGCGCCACCTGGTTCTTGGCCGCATCCCCGATGAGCCGC TCAGCGCCACCTGGTTCTTAGCCGCATCCCCGATGAGCCGC < 41bp 0.562592126326974 0.768627223744267 NA NA prediction 0.412070194834586 Functional Gain - HSPA1A ENSG00000204389 CDS Human protein_coding chr6:31783697 chr6:31783698 synonymous SNV . 0 20 hm7G_associated_SNPs_32075 0 0 0 0 1 HSPA1A chr6:31783647 5'GT 31783647 Upstream 52bp 29462 chr1 45162817 45162817 1 + G T COAD 45162818 + 45162798 45162838 41 AAAGCTTCTCAGGTCCATTGGCATCTTCTTATCAGCTGTAA AAAGCTTCTCAGGTCCATTTGCATCTTCTTATCAGCTGTAA < 41bp 0.361164151402498 0.706030915070192 NA NA prediction 0.412061830140384 Functional Gain - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45162818 chr1:45162817 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_32076 0 0 0 0 2 C1orf228 chr1:45162774 3'AG 45162774 Downstream 44bp 29463 chr1 45162817 45162817 1 + G T COAD 45162818 + 45162798 45162838 41 AAAGCTTCTCAGGTCCATTGGCATCTTCTTATCAGCTGTAA AAAGCTTCTCAGGTCCATTTGCATCTTCTTATCAGCTGTAA < 41bp 0.361164151402498 0.706030915070192 NA NA prediction 0.412061830140384 Functional Gain - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45162818 chr1:45162817 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_32076 0 0 0 0 2 C1orf228 chr1:45162842 5'GT 45162842 Upstream 26bp 29464 chr16 89661925 89661925 1 + G A UCEC 89661926 + 89661906 89661946 41 CGACATGCAGGTCCTGGACGGCGACGACGGCGTCCTGCGCT CGACATGCAGGTCCTGGACAGCGACGACGGCGTCCTGCGCT < 41bp 0.55344398492118 0.759474368532797 NA NA prediction 0.412060767223233 Functional Gain - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89661926 chr16:89661925 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_32077 0 0 1 0 1 CPNE7 chr16:89662011 5'GT 89662011 Upstream 87bp 29465 chr12 109678918 109678918 1 + C T HNSC 109678919 + 109678899 109678939 41 GCTACATGGTTATGCGCTACGGCAGCCGGCTGTGGAAACTC GCTACATGGTTATGCGCTATGGCAGCCGGCTGTGGAAACTC < 41bp 0.50315315633871 0.709180136161752 NA NA prediction 0.412053959646085 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109678919 chr12:109678918 synonymous SNV . 0 20 hm7G_associated_SNPs_32078 0 0 0 0 1 ACACB chr12:109678883 3'AG 109678883 Downstream 36bp 29466 chr10 43604533 43604533 1 + C T rs546866208 43604534 + 43604514 43604554 41 AACCGCACCATGCAGCTGGCGGTGCTGGTCAATGACTCAGA AACCGCACCATGCAGCTGGTGGTGCTGGTCAATGACTCAGA < 41bp 0.48816087214579 0.706025493068167 NA NA prediction 0.412050986136334 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43604534 chr10:43604533 nonsynonymous SNV 0.041 0 20 hm7G_associated_SNPs_32081 5 0 1 0 1 RET chr10:43604479 3'AG 43604479 Downstream 55bp 29467 chr15 80454663 80454663 1 + C T STAD 80454664 + 80454644 80454684 41 TTCAGGGACAAGGAGAATGCGTTGATGCCAAATTGGTATGA TTCAGGGACAAGGAGAATGTGTTGATGCCAAATTGGTATGA < 41bp 0.502713810999523 0.708739194812118 NA NA prediction 0.41205076762519 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80454664 chr15:80454663 nonsynonymous SNV 0.411 5 20 hm7G_associated_SNPs_32082 0 0 1 0 2 FAH chr15:80454588 3'AG 80454588 Downstream 76bp 29468 chr15 80454663 80454663 1 + C T STAD 80454664 + 80454644 80454684 41 TTCAGGGACAAGGAGAATGCGTTGATGCCAAATTGGTATGA TTCAGGGACAAGGAGAATGTGTTGATGCCAAATTGGTATGA < 41bp 0.502713810999523 0.708739194812118 NA NA prediction 0.41205076762519 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80454664 chr15:80454663 nonsynonymous SNV 0.411 5 20 hm7G_associated_SNPs_32082 0 0 1 0 2 FAH chr15:80454678 5'GT 80454678 Upstream 16bp 29469 chr11 77583269 77583269 1 + C T COAD 77583270 + 77583250 77583290 41 GAAACATGGCATTGATGTGCGGGTCCTCCAGACAGAGCAGG GAAACATGGCATTGATGTGTGGGTCCTCCAGACAGAGCAGG < 41bp 0.499615649358107 0.706024306072738 NA NA prediction 0.412048612145477 Functional Gain - AAMDC ENSG00000087884 CDS Human protein_coding chr11:77583270 chr11:77583269 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_32083 0 0 1 0 1 AAMDC chr11:77583221 3'AG 77583221 Downstream 49bp 29470 chr2 119750794 119750794 1 + C T UCEC 119750795 + 119750775 119750815 41 GGGGGACAATTTGCGATGACGAGTGGCAAAATTCTGATGCC GGGGGACAATTTGCGATGATGAGTGGCAAAATTCTGATGCC < 41bp 0.515744971578196 0.721761777817008 NA NA prediction 0.412033612477623 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119750795 chr2:119750794 synonymous SNV . 0 20 hm7G_associated_SNPs_32088 0 0 0 0 2 MARCO chr2:119750700 3'AG 119750700 Downstream 95bp 29471 chr2 119750794 119750794 1 + C T UCEC 119750795 + 119750775 119750815 41 GGGGGACAATTTGCGATGACGAGTGGCAAAATTCTGATGCC GGGGGACAATTTGCGATGATGAGTGGCAAAATTCTGATGCC < 41bp 0.515744971578196 0.721761777817008 NA NA prediction 0.412033612477623 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119750795 chr2:119750794 synonymous SNV . 0 20 hm7G_associated_SNPs_32088 0 0 0 0 2 MARCO chr2:119750876 5'GT 119750876 Upstream 83bp 29472 chr6 117859814 117859814 1 + C T rs149784566 117859815 + 117859795 117859835 41 CCTTGAGTTTTGAACCTGACGGGCAAATCAGAGCTTCTTCC CCTTGAGTTTTGAACCTGATGGGCAAATCAGAGCTTCTTCC < 41bp 0.543199087393154 0.749215843114159 NA NA prediction 0.41203351144201 Functional Gain - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117859815 chr6:117859814 synonymous SNV . 0 20 hm7G_associated_SNPs_32089 0 0 1 0 1 DCBLD1 chr6:117859783 3'AG 117859783 Downstream 32bp 29473 chr11 120331436 120331436 1 + C T SKCM 120331437 + 120331417 120331457 41 GAAATGAGACCTCTGTTATCGATCAGATTGGGGAAGATTTG GAAATGAGACCTCTGTTATTGATCAGATTGGGGAAGATTTG < 41bp 0.497199220862795 0.706016355100449 NA NA prediction 0.412032710200899 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120331437 chr11:120331436 synonymous SNV . 0 20 hm7G_associated_SNPs_32090 0 0 1 0 2 ARHGEF12 chr11:120331381 3'AG 120331381 Downstream 56bp 29474 chr11 120331436 120331436 1 + C T SKCM 120331437 + 120331417 120331457 41 GAAATGAGACCTCTGTTATCGATCAGATTGGGGAAGATTTG GAAATGAGACCTCTGTTATTGATCAGATTGGGGAAGATTTG < 41bp 0.497199220862795 0.706016355100449 NA NA prediction 0.412032710200899 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120331437 chr11:120331436 synonymous SNV . 0 20 hm7G_associated_SNPs_32090 0 0 1 0 2 ARHGEF12 chr11:120331466 5'GT 120331466 Upstream 31bp 29475 chr19 47870329 47870329 1 + G T LUAD 47870330 + 47870310 47870350 41 ACCGCCATCCTCTACCTCCGGGACCAGGGGGCCCTGGACAG ACCGCCATCCTCTACCTCCTGGACCAGGGGGCCCTGGACAG < 41bp 0.712871004000421 0.918887236826785 NA NA prediction 0.412032465652727 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47870330 chr19:47870329 nonsynonymous SNV 0.947 1 20 hm7G_associated_SNPs_32091 0 0 0 0 2 DHX34 chr19:47870238 3'AG 47870238 Downstream 92bp 29476 chr19 47870329 47870329 1 + G T LUAD 47870330 + 47870310 47870350 41 ACCGCCATCCTCTACCTCCGGGACCAGGGGGCCCTGGACAG ACCGCCATCCTCTACCTCCTGGACCAGGGGGCCCTGGACAG < 41bp 0.712871004000421 0.918887236826785 NA NA prediction 0.412032465652727 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47870330 chr19:47870329 nonsynonymous SNV 0.947 1 20 hm7G_associated_SNPs_32091 0 0 0 0 2 DHX34 chr19:47870412 5'GT 47870412 Upstream 84bp 29477 chr1 155837776 155837776 1 + G A UCEC 155837777 + 155837757 155837797 41 TGTGTCACCGGTGGTGGCCGGCCTCATCGGGGCCTCTGTGC TGTGTCACCGGTGGTGGCCAGCCTCATCGGGGCCTCTGTGC < 41bp 0.533307350619911 0.739319520868617 NA NA prediction 0.412024340497411 Functional Gain - SYT11 ENSG00000132718 CDS Human protein_coding chr1:155837777 chr1:155837776 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_32095 0 0 0 0 1 SYT11 chr1:155837756 3'AG 155837756 Downstream 21bp 29478 chr17 32953546 32953546 1 + C T LUAD 32953547 + 32953527 32953567 41 GCCGGGACTGGGACGACTTCGGCGTCACCGAGCGGCTGCCC GCCGGGACTGGGACGACTTTGGCGTCACCGAGCGGCTGCCC < 41bp 0.50082583833977 0.706837835398163 NA NA prediction 0.412023994116785 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32953547 chr17:32953546 synonymous SNV . 0 20 hm7G_associated_SNPs_32096 0 0 0 0 1 TMEM132E chr17:32953603 5'GT 32953603 Upstream 58bp 29479 chr3 52825873 52825873 1 + G A SKCM 52825874 + 52825854 52825894 41 GGTTCATTCACAACAATGGGGCTGGACTCATCGATGGTGCC GGTTCATTCACAACAATGGAGCTGGACTCATCGATGGTGCC < 41bp 0.509953813578462 0.715964289925681 NA NA prediction 0.412020952694437 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52825874 chr3:52825873 synonymous SNV . 0 20 hm7G_associated_SNPs_32098 0 0 1 0 1 ITIH1 chr3:52825798 3'AG 52825798 Downstream 76bp 29480 chr5 139216515 139216515 1 + C T LUSC 139216516 + 139216496 139216536 41 TTCCTGGATGTCCCACAGGCGCTCAGTGCCACCACCTACAA TTCCTGGATGTCCCACAGGTGCTCAGTGCCACCACCTACAA < 41bp 0.513255307961403 0.719265057946734 NA NA prediction 0.412019499970662 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139216516 chr5:139216515 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_32100 0 0 0 0 1 PSD2 chr5:139216586 5'GT 139216586 Upstream 72bp 29481 chr1 43812204 43812204 1 + C T COAD 43812205 + 43812185 43812225 41 TCGCTGCCACTTCAAGTCACGAAATGACAGCATTATTCACA TCGCTGCCACTTCAAGTCATGAAATGACAGCATTATTCACA < 41bp 0.522815659193354 0.728825404619091 NA NA prediction 0.412019490851473 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43812205 chr1:43812204 stopgain 0.998 0 20 hm7G_associated_SNPs_32101 0 0 0 0 2 MPL chr1:43812116 3'AG 43812116 Downstream 89bp 29482 chr1 43812204 43812204 1 + C T COAD 43812205 + 43812185 43812225 41 TCGCTGCCACTTCAAGTCACGAAATGACAGCATTATTCACA TCGCTGCCACTTCAAGTCATGAAATGACAGCATTATTCACA < 41bp 0.522815659193354 0.728825404619091 NA NA prediction 0.412019490851473 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43812205 chr1:43812204 stopgain 0.998 0 20 hm7G_associated_SNPs_32101 0 0 0 0 2 MPL chr1:43812300 5'GT 43812300 Upstream 97bp 29483 chr11 6261925 6261925 1 + C T COAD 6261926 + 6261906 6261946 41 CGTCAACCGCAAGCTGGAGCGGCGAGTTATTGACTGGTGAG CGTCAACCGCAAGCTGGAGTGGCGAGTTATTGACTGGTGAG < 41bp 0.510403392960406 0.716412645974444 NA NA prediction 0.412018506028077 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261926 chr11:6261925 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_32102 0 0 0 0 2 CNGA4 chr11:6261869 3'AG 6261869 Downstream 57bp 29484 chr11 6261925 6261925 1 + C T COAD 6261926 + 6261906 6261946 41 CGTCAACCGCAAGCTGGAGCGGCGAGTTATTGACTGGTGAG CGTCAACCGCAAGCTGGAGTGGCGAGTTATTGACTGGTGAG < 41bp 0.510403392960406 0.716412645974444 NA NA prediction 0.412018506028077 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261926 chr11:6261925 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_32102 0 0 0 0 2 CNGA4 chr11:6261941 5'GT 6261941 Upstream 17bp 29485 chr16 67234673 67234673 1 + C T STAD 67234674 + 67234654 67234694 41 TGGGCCAGCTGGTCAAGAGCGAGGTGCCCCTGGATAGGCTG TGGGCCAGCTGGTCAAGAGTGAGGTGCCCCTGGATAGGCTG < 41bp 0.495139848528372 0.706008462496455 NA NA prediction 0.412016924992911 Functional Gain - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234674 chr16:67234673 synonymous SNV . 0 20 hm7G_associated_SNPs_32103 0 0 0 0 1 ELMO3 chr16:67234711 5'GT 67234711 Upstream 39bp 29486 chr3 38047327 38047327 1 + G A rs142867526 38047328 + 38047308 38047348 41 CAAGTGAGTGGAAGGAGGCGGTGGCCTGGGGCCAGGAGTAC CAAGTGAGTGGAAGGAGGCAGTGGCCTGGGGCCAGGAGTAC < 41bp 0.495456226735592 0.70600593168099 NA NA prediction 0.41201186336198 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38047328 chr3:38047327 synonymous SNV . 0 20 hm7G_associated_SNPs_32105 0 0 1 0 1 VILL chr3:38047283 3'AG 38047283 Downstream 45bp 29487 chr15 40702870 40702870 1 + G T LUAD 40702871 + 40702851 40702891 41 GCTACCTGGAGCATGTGCTGGTGATGGAGGAGATATCCCGA GCTACCTGGAGCATGTGCTTGTGATGGAGGAGATATCCCGA < 41bp 0.70455619937371 0.910557920268406 NA NA prediction 0.412003441789392 Functional Gain - IVD ENSG00000128928 CDS Human protein_coding chr15:40702871 chr15:40702870 synonymous SNV . 0 20 hm7G_associated_SNPs_32108 0 0 1 0 1 IVD chr15:40702827 3'AG 40702827 Downstream 44bp 29488 chr1 153659127 153659127 1 + G A SKCM 153659128 + 153659108 153659148 41 GGTCCCACTTGCAGATGCGGGATGTGCAGAATGAACACCTG GGTCCCACTTGCAGATGCGAGATGTGCAGAATGAACACCTG < 41bp 0.501976444923518 0.707972970678185 NA NA prediction 0.411993051509335 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153659128 chr1:153659127 synonymous SNV . 0 20 hm7G_associated_SNPs_32110 0 0 0 0 2 NPR1 chr1:153659122 3'AG 153659122 Downstream 6bp 29489 chr1 153659127 153659127 1 + G A SKCM 153659128 + 153659108 153659148 41 GGTCCCACTTGCAGATGCGGGATGTGCAGAATGAACACCTG GGTCCCACTTGCAGATGCGAGATGTGCAGAATGAACACCTG < 41bp 0.501976444923518 0.707972970678185 NA NA prediction 0.411993051509335 Functional Gain - NPR1 ENSG00000169418 CDS Human protein_coding chr1:153659128 chr1:153659127 synonymous SNV . 0 20 hm7G_associated_SNPs_32110 0 0 0 0 2 NPR1 chr1:153659226 5'GT 153659226 Upstream 100bp 29490 chr5 72383495 72383495 1 + C T UCEC 72383496 + 72383476 72383516 41 TTGCAGTACAATTCCTCAGCGAGGGAAGTACCCTTTCAGGA TTGCAGTACAATTCCTCAGTGAGGGAAGTACCCTTTCAGGA < 41bp 0.525583067123824 0.731579544598585 NA NA prediction 0.411992954949523 Functional Gain - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72383496 chr5:72383495 synonymous SNV . 0 20 hm7G_associated_SNPs_32111 0 0 0 0 2 FCHO2 chr5:72383416 3'AG 72383416 Downstream 80bp 29491 chr5 72383495 72383495 1 + C T UCEC 72383496 + 72383476 72383516 41 TTGCAGTACAATTCCTCAGCGAGGGAAGTACCCTTTCAGGA TTGCAGTACAATTCCTCAGTGAGGGAAGTACCCTTTCAGGA < 41bp 0.525583067123824 0.731579544598585 NA NA prediction 0.411992954949523 Functional Gain - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72383496 chr5:72383495 synonymous SNV . 0 20 hm7G_associated_SNPs_32111 0 0 0 0 2 FCHO2 chr5:72383580 5'GT 72383580 Upstream 86bp 29492 chr1 201168470 201168470 1 + C T UCEC 201168471 + 201168451 201168491 41 GGATGTTGCAGTTGGCTTTCGGAAGAATCGGAAGAGGCACA GGATGTTGCAGTTGGCTTTTGGAAGAATCGGAAGAGGCACA < 41bp 0.505530853542449 0.711526909672844 NA NA prediction 0.411992112260791 Functional Gain - IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201168471 chr1:201168470 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_32113 0 0 0 0 2 IGFN1 chr1:201168462 3'AG 201168462 Downstream 9bp 29493 chr1 201168470 201168470 1 + C T UCEC 201168471 + 201168451 201168491 41 GGATGTTGCAGTTGGCTTTCGGAAGAATCGGAAGAGGCACA GGATGTTGCAGTTGGCTTTTGGAAGAATCGGAAGAGGCACA < 41bp 0.505530853542449 0.711526909672844 NA NA prediction 0.411992112260791 Functional Gain - IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201168471 chr1:201168470 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_32113 0 0 0 0 2 IGFN1 chr1:201168506 5'GT 201168506 Upstream 37bp 29494 chr8 125072866 125072866 1 + C T CESC 125072867 + 125072847 125072887 41 CTCAGGCTCTCATTGAGTGCGGAGGACAAGGTGTGAAGTCC CTCAGGCTCTCATTGAGTGTGGAGGACAAGGTGTGAAGTCC < 41bp 0.524251445564198 0.730246043285233 NA NA prediction 0.411989195442071 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125072867 chr8:125072866 synonymous SNV . 0 20 hm7G_associated_SNPs_32114 0 0 0 0 2 FER1L6 chr8:125072789 3'AG 125072789 Downstream 78bp 29495 chr8 125072866 125072866 1 + C T CESC 125072867 + 125072847 125072887 41 CTCAGGCTCTCATTGAGTGCGGAGGACAAGGTGTGAAGTCC CTCAGGCTCTCATTGAGTGTGGAGGACAAGGTGTGAAGTCC < 41bp 0.524251445564198 0.730246043285233 NA NA prediction 0.411989195442071 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125072867 chr8:125072866 synonymous SNV . 0 20 hm7G_associated_SNPs_32114 0 0 0 0 2 FER1L6 chr8:125072950 5'GT 125072950 Upstream 85bp 29496 chr19 49261268 49261268 1 + G A UCEC 49261269 + 49261249 49261289 41 TTACCAGTCCGAAGCCCACGGCCTCCCGCTGCACCTGCCAG TTACCAGTCCGAAGCCCACAGCCTCCCGCTGCACCTGCCAG < 41bp 0.577639763860665 0.78363291238614 NA NA prediction 0.411986297050949 Functional Gain - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49261269 chr19:49261268 nonsynonymous SNV 0.012 2 20 hm7G_associated_SNPs_32116 0 0 0 0 1 FGF21 chr19:49261187 3'AG 49261187 Downstream 82bp 29497 chr12 274933 274933 1 + G A SKCM 274934 + 274914 274954 41 ACTGGTGACCCCGCTCTCGGGCTCCGAGAAGAAGCAGGTGC ACTGGTGACCCCGCTCTCGAGCTCCGAGAAGAAGCAGGTGC < 41bp 0.569966155373135 0.775955406180245 NA NA prediction 0.411978501614219 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:274934 chr12:274933 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_32119 0 0 0 0 1 IQSEC3 chr12:274895 3'AG 274895 Downstream 39bp 29498 chr1 201291195 201291195 1 + C T OV 201291196 + 201291176 201291216 41 ACCGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAG ACCGCCAGCTGGAGTATAATGCCCGCAACGCCTACACCGAG < 41bp 0.520503508387682 0.726491067013169 NA NA prediction 0.411975117250973 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201291196 chr1:201291195 synonymous SNV . 0 20 hm7G_associated_SNPs_32120 0 0 0 0 2 PKP1 chr1:201291106 3'AG 201291106 Downstream 90bp 29499 chr1 201291195 201291195 1 + C T OV 201291196 + 201291176 201291216 41 ACCGCCAGCTGGAGTATAACGCCCGCAACGCCTACACCGAG ACCGCCAGCTGGAGTATAATGCCCGCAACGCCTACACCGAG < 41bp 0.520503508387682 0.726491067013169 NA NA prediction 0.411975117250973 Functional Gain - PKP1 ENSG00000081277 CDS Human protein_coding chr1:201291196 chr1:201291195 synonymous SNV . 0 20 hm7G_associated_SNPs_32120 0 0 0 0 2 PKP1 chr1:201291261 5'GT 201291261 Upstream 67bp 29500 chr15 31202935 31202935 1 + C T rs199855919 31202936 + 31202916 31202956 41 AGAAACAGCAGCTGGTGGACGCCTTTCTCAAATTGGCCAAA AGAAACAGCAGCTGGTGGATGCCTTTCTCAAATTGGCCAAA < 41bp 0.493081408546449 0.705984896811638 NA NA prediction 0.411969793623276 Functional Gain - FAN1 ENSG00000198690 CDS Human protein_coding chr15:31202936 chr15:31202935 synonymous SNV . 0 20 hm7G_associated_SNPs_32122 0 0 0 0 1 FAN1 chr15:31203018 5'GT 31203018 Upstream 84bp 29501 chr22 39441500 39441500 1 + C T SKCM 39441501 + 39441481 39441521 41 TCATGCCTTGGTACAAATTCGATGACAATTATGCATTCCTG TCATGCCTTGGTACAAATTTGATGACAATTATGCATTCCTG < 41bp 0.499951699815722 0.705984035634973 NA NA prediction 0.411968071269947 Functional Gain - APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39441501 chr22:39441500 synonymous SNV . 0 20 hm7G_associated_SNPs_32123 0 0 0 0 2 APOBEC3F chr22:39441433 3'AG 39441433 Downstream 68bp 29502 chr22 39441500 39441500 1 + C T SKCM 39441501 + 39441481 39441521 41 TCATGCCTTGGTACAAATTCGATGACAATTATGCATTCCTG TCATGCCTTGGTACAAATTTGATGACAATTATGCATTCCTG < 41bp 0.499951699815722 0.705984035634973 NA NA prediction 0.411968071269947 Functional Gain - APOBEC3F ENSG00000128394 CDS Human protein_coding chr22:39441501 chr22:39441500 synonymous SNV . 0 20 hm7G_associated_SNPs_32123 0 0 0 0 2 APOBEC3F chr22:39441547 5'GT 39441547 Upstream 48bp 29503 chr15 41148138 41148138 1 + C T rs142750993 41148139 + 41148119 41148159 41 CTCTGCAAGGAGAGCATCCCGCGCTGGTACTACAACCCCTT CTCTGCAAGGAGAGCATCCTGCGCTGGTACTACAACCCCTT < 41bp 0.500476888689763 0.70646025742307 NA NA prediction 0.411966737466615 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41148139 chr15:41148138 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_32124 0 0 0 0 1 SPINT1 chr15:41148090 3'AG 41148090 Downstream 49bp 29504 chr17 72739298 72739298 1 + C T UCEC 72739299 + 72739279 72739319 41 CGCTGGGCAGGAACGGTTCCGAAGCGTCACCCATGCTTATT CGCTGGGCAGGAACGGTTCTGAAGCGTCACCCATGCTTATT < 41bp 0.540053609300819 0.746035525989866 NA NA prediction 0.411963833378094 Functional Gain - RAB37 ENSG00000172794 CDS Human protein_coding chr17:72739299 chr17:72739298 stopgain 0.991 1 20 hm7G_associated_SNPs_32125 0 0 0 0 1 RAB37 chr17:72739268 3'AG 72739268 Downstream 31bp 29505 chr6 41557560 41557560 1 + C T STAD 41557561 + 41557541 41557581 41 GATGGCCCACCTGCACATGCGGCCCTCGGAGCCCAAGCCCT GATGGCCCACCTGCACATGTGGCCCTCGGAGCCCAAGCCCT < 41bp 0.500456383487175 0.70643267803435 NA NA prediction 0.411952589094351 Functional Gain - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557561 chr6:41557560 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_32129 0 0 1 0 2 FOXP4 chr6:41557509 3'AG 41557509 Downstream 52bp 29506 chr6 41557560 41557560 1 + C T STAD 41557561 + 41557541 41557581 41 GATGGCCCACCTGCACATGCGGCCCTCGGAGCCCAAGCCCT GATGGCCCACCTGCACATGTGGCCCTCGGAGCCCAAGCCCT < 41bp 0.500456383487175 0.70643267803435 NA NA prediction 0.411952589094351 Functional Gain - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41557561 chr6:41557560 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_32129 0 0 1 0 2 FOXP4 chr6:41557592 5'GT 41557592 Upstream 33bp 29507 chr14 94393719 94393719 1 + G A rs183826306 94393720 + 94393700 94393740 41 TTCCAGCCGGACGGAGCTCGGCCGGCTGCGCCGGGGCCTGT TTCCAGCCGGACGGAGCTCAGCCGGCTGCGCCGGGGCCTGT < 41bp 0.497876912720325 0.705975759687632 NA NA prediction 0.411951519375264 Functional Gain - FAM181A ENSG00000140067 UTR5 Human protein_coding chr14:94393720 chr14:94393719 . . 0 20 hm7G_associated_SNPs_32130 0 0 0 0 2 FAM181A chr14:94393745 5'GT 94393745 Upstream 27bp 29508 chr14 94393719 94393719 1 + G A rs183826306 94393720 + 94393700 94393740 41 TTCCAGCCGGACGGAGCTCGGCCGGCTGCGCCGGGGCCTGT TTCCAGCCGGACGGAGCTCAGCCGGCTGCGCCGGGGCCTGT < 41bp 0.497876912720325 0.705975759687632 NA NA prediction 0.411951519375264 Functional Gain - FAM181A ENSG00000140067 UTR5 Human protein_coding chr14:94393720 chr14:94393719 . . 0 20 hm7G_associated_SNPs_32130 0 0 0 0 2 FAM181A chr14:94393800 5'GT 94393800 Upstream 82bp 29509 chr9 99233313 99233313 1 + C T LAML 99233314 + 99233294 99233334 41 GATGTGGAGCCAACTGCACCGATGGAGGAACCCACAGTGGT GATGTGGAGCCAACTGCACTGATGGAGGAACCCACAGTGGT < 41bp 0.534953449951357 0.740925956653355 NA NA prediction 0.411945013403997 Functional Gain - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99233314 chr9:99233313 nonsynonymous SNV 0.020 0 20 hm7G_associated_SNPs_32131 0 0 1 0 2 HABP4 chr9:99233293 3'AG 99233293 Downstream 21bp 29510 chr9 99233313 99233313 1 + C T LAML 99233314 + 99233294 99233334 41 GATGTGGAGCCAACTGCACCGATGGAGGAACCCACAGTGGT GATGTGGAGCCAACTGCACTGATGGAGGAACCCACAGTGGT < 41bp 0.534953449951357 0.740925956653355 NA NA prediction 0.411945013403997 Functional Gain - HABP4 ENSG00000130956 CDS Human protein_coding chr9:99233314 chr9:99233313 nonsynonymous SNV 0.020 0 20 hm7G_associated_SNPs_32131 0 0 1 0 2 HABP4 chr9:99233376 5'GT 99233376 Upstream 64bp 29511 chr9 138439815 138439815 1 + G A rs140270176 138439816 + 138439796 138439836 41 TGGGGGCCTGCGCTACATGGGAAAGCTTGTGGGTGAGGGGC TGGGGGCCTGCGCTACATGAGAAAGCTTGTGGGTGAGGGGC < 41bp 0.548003670417757 0.753972715259972 NA NA prediction 0.411938089684429 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439816 chr9:138439815 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_32134 0 0 0 0 2 OBP2A chr9:138439717 3'AG 138439717 Downstream 99bp 29512 chr9 138439815 138439815 1 + G A rs140270176 138439816 + 138439796 138439836 41 TGGGGGCCTGCGCTACATGGGAAAGCTTGTGGGTGAGGGGC TGGGGGCCTGCGCTACATGAGAAAGCTTGTGGGTGAGGGGC < 41bp 0.548003670417757 0.753972715259972 NA NA prediction 0.411938089684429 Functional Gain - OBP2A ENSG00000122136 CDS Human protein_coding chr9:138439816 chr9:138439815 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_32134 0 0 0 0 2 OBP2A chr9:138439827 5'GT 138439827 Upstream 13bp 29513 chr7 139221051 139221051 1 + C T LIHC 139221052 + 139221032 139221072 41 GCCTCCTGCTGGGTGCCATCGCGGTCCTTCTGTTCGCCATC GCCTCCTGCTGGGTGCCATTGCGGTCCTTCTGTTCGCCATC < 41bp 0.500930851489712 0.70689886247697 NA NA prediction 0.411936021974517 Functional Gain - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139221052 chr7:139221051 synonymous SNV . 0 20 hm7G_associated_SNPs_32135 0 0 0 0 2 CLEC2L chr7:139221020 3'AG 139221020 Downstream 32bp 29514 chr7 139221051 139221051 1 + C T LIHC 139221052 + 139221032 139221072 41 GCCTCCTGCTGGGTGCCATCGCGGTCCTTCTGTTCGCCATC GCCTCCTGCTGGGTGCCATTGCGGTCCTTCTGTTCGCCATC < 41bp 0.500930851489712 0.70689886247697 NA NA prediction 0.411936021974517 Functional Gain - CLEC2L ENSG00000236279 CDS Human protein_coding chr7:139221052 chr7:139221051 synonymous SNV . 0 20 hm7G_associated_SNPs_32135 0 0 0 0 2 CLEC2L chr7:139221094 5'GT 139221094 Upstream 44bp 29515 chr7 31120238 31120238 1 + C T SARC 31120239 + 31120219 31120259 41 CTGTTTCAGTCTGGGAGACCGAAACCATTGGTAAGAGGAAC CTGTTTCAGTCTGGGAGACTGAAACCATTGGTAAGAGGAAC < 41bp 0.508229739341558 0.714197406381128 NA NA prediction 0.41193533407914 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31120239 chr7:31120238 synonymous SNV . 0 20 hm7G_associated_SNPs_32136 0 0 0 0 2 ADCYAP1R1 chr7:31120228 3'AG 31120228 Downstream 11bp 29516 chr7 31120238 31120238 1 + C T SARC 31120239 + 31120219 31120259 41 CTGTTTCAGTCTGGGAGACCGAAACCATTGGTAAGAGGAAC CTGTTTCAGTCTGGGAGACTGAAACCATTGGTAAGAGGAAC < 41bp 0.508229739341558 0.714197406381128 NA NA prediction 0.41193533407914 Functional Gain - ADCYAP1R1 ENSG00000078549 CDS Human protein_coding chr7:31120239 chr7:31120238 synonymous SNV . 0 20 hm7G_associated_SNPs_32136 0 0 0 0 2 ADCYAP1R1 chr7:31120248 5'GT 31120248 Upstream 11bp 29517 chr20 60847303 60847303 1 + G A SKCM 60847304 + 60847284 60847324 41 CCTGCCAGCCCCAGCCCCTGGAGAGGATGCAGGTGGGCCTT CCTGCCAGCCCCAGCCCCTAGAGAGGATGCAGGTGGGCCTT < 41bp 0.531589230320113 0.737555779233804 NA NA prediction 0.411933097827383 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60847304 chr20:60847303 synonymous SNV . 0 20 hm7G_associated_SNPs_32138 0 0 1 0 1 OSBPL2 chr20:60847315 5'GT 60847315 Upstream 13bp 29518 chr7 142566296 142566296 1 + G A UCEC 142566297 + 142566277 142566317 41 TGCAGCCACGGGGACGGAGGGAGCAGACTGTGGCCATCCAG TGCAGCCACGGGGACGGAGAGAGCAGACTGTGGCCATCCAG < 41bp 0.494362941788406 0.705964121185164 NA NA prediction 0.411928242370329 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142566297 chr7:142566296 synonymous SNV . 0 20 hm7G_associated_SNPs_32139 0 0 1 0 1 EPHB6 chr7:142566247 3'AG 142566247 Downstream 50bp 29519 chr9 82323611 82323611 1 + G A UCEC 82323612 + 82323592 82323632 41 AGCTGACCAGCCCCGGAGCGGCCTACGCTGGGCTCCACAAC AGCTGACCAGCCCCGGAGCAGCCTACGCTGGGCTCCACAAC < 41bp 0.489537544956636 0.705964092871353 NA NA prediction 0.411928185742706 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82323612 chr9:82323611 synonymous SNV . 0 20 hm7G_associated_SNPs_32140 0 0 0 0 1 TLE4 chr9:82323701 5'GT 82323701 Upstream 91bp 29520 chr12 122613736 122613736 1 + G A GBM 122613737 + 122613717 122613757 41 CGCATCGAGATTGTGATCCGGGAGTATCACAAGTGGAGAAC CGCATCGAGATTGTGATCCAGGAGTATCACAAGTGGAGAAC < 41bp 0.532974215999504 0.738936750063935 NA NA prediction 0.411925068128863 Functional Gain - MLXIP ENSG00000175727 CDS Human protein_coding chr12:122613737 chr12:122613736 nonsynonymous SNV 0.919 2 20 hm7G_associated_SNPs_32141 0 0 1 0 1 MLXIP chr12:122613684 3'AG 122613684 Downstream 53bp 29521 chr3 133467427 133467427 1 + C T rs142819812 133467428 + 133467408 133467448 41 GATTGCATCAGGGCCATTGCGGTAAGTCGCTGCTGCCTAAA GATTGCATCAGGGCCATTGTGGTAAGTCGCTGCTGCCTAAA < 41bp 0.504149433553823 0.71011099578917 NA NA prediction 0.411923124470695 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133467428 chr3:133467427 nonsynonymous SNV 0.091 0 20 hm7G_associated_SNPs_32142 0 0 1 0 2 TF chr3:133467330 3'AG 133467330 Downstream 98bp 29522 chr3 133467427 133467427 1 + C T rs142819812 133467428 + 133467408 133467448 41 GATTGCATCAGGGCCATTGCGGTAAGTCGCTGCTGCCTAAA GATTGCATCAGGGCCATTGTGGTAAGTCGCTGCTGCCTAAA < 41bp 0.504149433553823 0.71011099578917 NA NA prediction 0.411923124470695 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133467428 chr3:133467427 nonsynonymous SNV 0.091 0 20 hm7G_associated_SNPs_32142 0 0 1 0 2 TF chr3:133467428 5'GT 133467428 Upstream 2bp 29523 chr22 32881138 32881138 1 + C T GBM 32881139 + 32881119 32881159 41 AGTACATGCATCCTCTCTGCGAGGGCAGCTCCGCTACTCTC AGTACATGCATCCTCTCTGTGAGGGCAGCTCCGCTACTCTC < 41bp 0.51464925311167 0.720607923621699 NA NA prediction 0.411917341020059 Functional Gain - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881139 chr22:32881138 synonymous SNV . 0 20 hm7G_associated_SNPs_32143 0 0 1 0 2 FBXO7 chr22:32881055 3'AG 32881055 Downstream 84bp 29524 chr22 32881138 32881138 1 + C T GBM 32881139 + 32881119 32881159 41 AGTACATGCATCCTCTCTGCGAGGGCAGCTCCGCTACTCTC AGTACATGCATCCTCTCTGTGAGGGCAGCTCCGCTACTCTC < 41bp 0.51464925311167 0.720607923621699 NA NA prediction 0.411917341020059 Functional Gain - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32881139 chr22:32881138 synonymous SNV . 0 20 hm7G_associated_SNPs_32143 0 0 1 0 2 FBXO7 chr22:32881196 5'GT 32881196 Upstream 59bp 29525 chr18 34261472 34261472 1 + C T COAD 34261473 + 34261453 34261493 41 GGCAGCAGAGAGAGAGAGGCGGCGGCAGGAGAGAGAAGAAA GGCAGCAGAGAGAGAGAGGTGGCGGCAGGAGAGAGAAGAAA < 41bp 0.505568019338195 0.711520171045288 NA NA prediction 0.411904303414186 Functional Gain - FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34261473 chr18:34261472 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_32147 0 0 0 0 2 FHOD3 chr18:34261399 3'AG 34261399 Downstream 74bp 29526 chr18 34261472 34261472 1 + C T COAD 34261473 + 34261453 34261493 41 GGCAGCAGAGAGAGAGAGGCGGCGGCAGGAGAGAGAAGAAA GGCAGCAGAGAGAGAGAGGTGGCGGCAGGAGAGAGAAGAAA < 41bp 0.505568019338195 0.711520171045288 NA NA prediction 0.411904303414186 Functional Gain - FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34261473 chr18:34261472 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_32147 0 0 0 0 2 FHOD3 chr18:34261533 5'GT 34261533 Upstream 62bp 29527 chr1 32632805 32632805 1 + C T COAD 32632806 + 32632786 32632826 41 ATATCTTCCCTGTGTTGATCGAAATCCTTCAGAAAGCAGAG ATATCTTCCCTGTGTTGATTGAAATCCTTCAGAAAGCAGAG < 41bp 0.529681786914501 0.735633356379535 NA NA prediction 0.411903138930068 Functional Gain - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32632806 chr1:32632805 synonymous SNV . 0 20 hm7G_associated_SNPs_32148 0 0 1 0 2 KPNA6 chr1:32632770 3'AG 32632770 Downstream 36bp 29528 chr1 32632805 32632805 1 + C T COAD 32632806 + 32632786 32632826 41 ATATCTTCCCTGTGTTGATCGAAATCCTTCAGAAAGCAGAG ATATCTTCCCTGTGTTGATTGAAATCCTTCAGAAAGCAGAG < 41bp 0.529681786914501 0.735633356379535 NA NA prediction 0.411903138930068 Functional Gain - KPNA6 ENSG00000025800 CDS Human protein_coding chr1:32632806 chr1:32632805 synonymous SNV . 0 20 hm7G_associated_SNPs_32148 0 0 1 0 2 KPNA6 chr1:32632897 5'GT 32632897 Upstream 93bp 29529 chr11 292901 292901 1 + C T COAD 292902 + 292882 292922 41 CCAGGACCTGCAGCTATTTCGAGAGGCTGGTGGCTGGGACG CCAGGACCTGCAGCTATTTTGAGAGGCTGGTGGCTGGGACG < 41bp 0.502247652738268 0.708196832055364 NA NA prediction 0.411898358634191 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292902 chr11:292901 stopgain 0.918 0 20 hm7G_associated_SNPs_32151 0 0 1 0 3 PGGHG chr11:292886 3'AG 292886 Downstream 16bp 29530 chr11 292901 292901 1 + C T COAD 292902 + 292882 292922 41 CCAGGACCTGCAGCTATTTCGAGAGGCTGGTGGCTGGGACG CCAGGACCTGCAGCTATTTTGAGAGGCTGGTGGCTGGGACG < 41bp 0.502247652738268 0.708196832055364 NA NA prediction 0.411898358634191 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292902 chr11:292901 stopgain 0.918 0 20 hm7G_associated_SNPs_32151 0 0 1 0 3 PGGHG chr11:292983 5'GT 292983 Upstream 83bp 29531 chr11 292901 292901 1 + C T COAD 292902 + 292882 292922 41 CCAGGACCTGCAGCTATTTCGAGAGGCTGGTGGCTGGGACG CCAGGACCTGCAGCTATTTTGAGAGGCTGGTGGCTGGGACG < 41bp 0.502247652738268 0.708196832055364 NA NA prediction 0.411898358634191 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292902 chr11:292901 stopgain 0.918 0 20 hm7G_associated_SNPs_32151 0 0 1 0 3 PGGHG chr11:292997 5'GT 292997 Upstream 97bp 29532 chr17 7490221 7490221 1 + C T rs79286384 7490222 + 7490202 7490242 41 TCTCCCCACCCCTAGGTGTCGCTTTCCTCGCTTGCTACGGC TCTCCCCACCCCTAGGTGTTGCTTTCCTCGCTTGCTACGGC < 41bp 0.492686331818644 0.705948267327856 NA NA prediction 0.411896534655712 Functional Gain - MPDU1 ENSG00000129255 CDS Human protein_coding chr17:7490222 chr17:7490221 nonsynonymous SNV 0.882 2 20 hm7G_associated_SNPs_32152 2 0 1 0 1 MPDU1 chr17:7490217 3'AG 7490217 Downstream 5bp 29533 chr20 33577664 33577664 1 + G A STAD 33577665 + 33577645 33577685 41 CCCAATTTCCAGCAGCCTCGGCCTGACAAGAAGCGCAAGTA CCCAATTTCCAGCAGCCTCAGCCTGACAAGAAGCGCAAGTA < 41bp 0.537075974062669 0.743023568768363 NA NA prediction 0.411895189411388 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33577665 chr20:33577664 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_32153 0 0 0 0 1 MYH7B chr20:33577722 5'GT 33577722 Upstream 59bp 29534 chr19 49913125 49913125 1 + G A LUSC 49913126 + 49913106 49913146 41 CCATCTGAAGCCCCAGCTGGGGGACAGGTGAGCACAGGAAA CCATCTGAAGCCCCAGCTGAGGGACAGGTGAGCACAGGAAA < 41bp 0.530471151790754 0.736418484005836 NA NA prediction 0.411894664430163 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49913126 chr19:49913125 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_32154 0 0 0 0 1 CCDC155 chr19:49913132 5'GT 49913132 Upstream 8bp 29535 chr1 11888574 11888574 1 + C T UCEC 11888575 + 11888555 11888595 41 TGGATTTGGGTTTCTTCGTCGTGATGGGGGTCATTGGGGGC TGGATTTGGGTTTCTTCGTTGTGATGGGGGTCATTGGGGGC < 41bp 0.5097353023897 0.715679202256769 NA NA prediction 0.411887799734137 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11888575 chr1:11888574 synonymous SNV . 0 20 hm7G_associated_SNPs_32156 0 0 1 0 1 CLCN6 chr1:11888515 3'AG 11888515 Downstream 60bp 29536 chr22 42422822 42422822 1 + C T BLCA 42422823 + 42422803 42422843 41 GAGCCCCACCTCCCGGATACGGAGCCCCACCTGCAGGATAT GAGCCCCACCTCCCGGATATGGAGCCCCACCTGCAGGATAT < 41bp 0.509346952276236 0.715288959476173 NA NA prediction 0.411884014399875 Functional Gain - WBP2NL ENSG00000183066 CDS Human protein_coding chr22:42422823 chr22:42422822 synonymous SNV . 0 20 hm7G_associated_SNPs_32158 0 0 0 0 1 WBP2NL chr22:42422770 3'AG 42422770 Downstream 53bp 29537 chr15 89382240 89382240 1 + C T SKCM 89382241 + 89382221 89382261 41 GCGAGGTGATGCATGGCATCGAGGACAGCGAGGCCACCCTG GCGAGGTGATGCATGGCATTGAGGACAGCGAGGCCACCCTG < 41bp 0.491235662068202 0.70593974082795 NA NA prediction 0.411879481655899 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89382241 chr15:89382240 synonymous SNV . 0 20 hm7G_associated_SNPs_32159 0 0 0 0 1 ACAN chr15:89382277 5'GT 89382277 Upstream 38bp 29538 chr12 124094579 124094579 1 + G A STAD 124094580 + 124094560 124094600 41 TGGAGAACCTGGTGAGAGCGGGCCTCCGGAACCCTGTCCGG TGGAGAACCTGGTGAGAGCAGGCCTCCGGAACCCTGTCCGG < 41bp 0.557218678318467 0.763157766009872 NA NA prediction 0.41187817538281 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124094580 chr12:124094579 synonymous SNV . 0 20 hm7G_associated_SNPs_32160 0 0 1 0 2 DDX55 chr12:124094486 3'AG 124094486 Downstream 94bp 29539 chr12 124094579 124094579 1 + G A STAD 124094580 + 124094560 124094600 41 TGGAGAACCTGGTGAGAGCGGGCCTCCGGAACCCTGTCCGG TGGAGAACCTGGTGAGAGCAGGCCTCCGGAACCCTGTCCGG < 41bp 0.557218678318467 0.763157766009872 NA NA prediction 0.41187817538281 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124094580 chr12:124094579 synonymous SNV . 0 20 hm7G_associated_SNPs_32160 0 0 1 0 2 DDX55 chr12:124094675 5'GT 124094675 Upstream 97bp 29540 chr9 130487075 130487075 1 + G A rs201375855 130487076 + 130487056 130487096 41 ACCTGGCCTTTGCCGAGGCGGACTACCAGCAGGCGCTGGCG ACCTGGCCTTTGCCGAGGCAGACTACCAGCAGGCGCTGGCG < 41bp 0.559812317315667 0.765750987206574 NA NA prediction 0.411877339781813 Functional Gain - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130487076 chr9:130487075 synonymous SNV . 0 20 hm7G_associated_SNPs_32161 0 0 0 0 1 TTC16 chr9:130487035 3'AG 130487035 Downstream 41bp 29541 chr17 18631041 18631041 1 + G A rs146869541 18631042 + 18631022 18631062 41 AGGAGCTGGAGACGATGGCGGCCATCAGCAACACTGTCCAG AGGAGCTGGAGACGATGGCAGCCATCAGCAACACTGTCCAG < 41bp 0.54125050269584 0.747188700849288 NA NA prediction 0.411876396306896 Functional Gain - TRIM16L ENSG00000108448 CDS Human protein_coding chr17:18631042 chr17:18631041 synonymous SNV . 0 20 hm7G_associated_SNPs_32163 0 0 0 0 1 TRIM16L chr17:18631071 5'GT 18631071 Upstream 31bp 29542 chr3 52021580 52021580 1 + G T UCEC 52021581 + 52021561 52021601 41 CCTTCTCTTAGGCTTTTGAGGAGCAGCTGCAGAGCTGGTGC CCTTCTCTTAGGCTTTTGATGAGCAGCTGCAGAGCTGGTGC < 41bp 0.699746937361929 0.90568278915679 NA NA prediction 0.41187170358972 Functional Gain - ABHD14A-ACY1;ACY1 ENSG00000114786;ENSG00000243989 CDS Human other chr3:52021581 chr3:52021580 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_32164 0 0 1 0 2 ABHD14A-ACY1;ACY1 chr3:52021572 3'AG 52021572 Downstream 9bp 29543 chr3 52021580 52021580 1 + G T UCEC 52021581 + 52021561 52021601 41 CCTTCTCTTAGGCTTTTGAGGAGCAGCTGCAGAGCTGGTGC CCTTCTCTTAGGCTTTTGATGAGCAGCTGCAGAGCTGGTGC < 41bp 0.699746937361929 0.90568278915679 NA NA prediction 0.41187170358972 Functional Gain - ABHD14A-ACY1;ACY1 ENSG00000114786;ENSG00000243989 CDS Human other chr3:52021581 chr3:52021580 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_32164 0 0 1 0 2 ABHD14A-ACY1;ACY1 chr3:52021640 5'GT 52021640 Upstream 61bp 29544 chr10 29776147 29776147 1 + G T UCEC 29776148 + 29776128 29776168 41 CCACAGGAAGCAGCAGTGGGGAGAGAGCAGGAGGAAGCAGT CCACAGGAAGCAGCAGTGGTGAGAGAGCAGGAGGAAGCAGT < 41bp 0.69155479862726 0.897489588776673 NA NA prediction 0.411869580298826 Functional Gain - SVIL ENSG00000197321 CDS Human antisense chr10:29776148 chr10:29776147 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_32165 0 0 0 0 1 SVIL-AS1 chr10:29776084 3'AG 29776084 Downstream 64bp 29545 chr5 178454500 178454500 1 + C T rs569685669 178454501 + 178454481 178454521 41 TGACGTTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAG TGACGTTCAGGGATGTGGCTGTGTTCTTCAGCCAGGACGAG < 41bp 0.508558437897449 0.714486754028173 NA NA prediction 0.411856632261448 Functional Gain - ZNF879 ENSG00000234284 CDS Human protein_coding chr5:178454501 chr5:178454500 nonsynonymous SNV 0.985 0 20 hm7G_associated_SNPs_32170 0 0 0 0 1 ZNF879 chr5:178454474 3'AG 178454474 Downstream 27bp 29546 chr11 105789483 105789483 1 + G T UCEC 105789484 + 105789464 105789504 41 AAATCATGAAATGTTTGAAGGAAATGACAAGTATGAAGGAT AAATCATGAAATGTTTGAATGAAATGACAAGTATGAAGGAT < 41bp 0.396756515693587 0.705926716047788 NA NA prediction 0.411853432095575 Functional Gain - GRIA4 ENSG00000152578 CDS Human protein_coding chr11:105789484 chr11:105789483 stopgain 1.000 1 20 hm7G_associated_SNPs_32171 0 0 0 0 1 GRIA4 chr11:105789438 3'AG 105789438 Downstream 46bp 29547 chr16 66613725 66613725 1 + G A GBM 66613726 + 66613706 66613746 41 AGGGGGTGTCGCCGCTACCGGTGGGAATTAAAAGACAGCAA AGGGGGTGTCGCCGCTACCAGTGGGAATTAAAAGACAGCAA < 41bp 0.501516141044672 0.707441658779359 NA NA prediction 0.411851035469373 Functional Gain - CMTM2 ENSG00000140932 CDS Human protein_coding chr16:66613726 chr16:66613725 nonsynonymous SNV 0.553 0 20 hm7G_associated_SNPs_32173 0 0 0 0 1 CMTM2 chr16:66613795 5'GT 66613795 Upstream 71bp 29548 chr11 20648387 20648387 1 + C T COAD 20648388 + 20648368 20648408 41 GAGAAACTCACGGATGCCACGGTGGGCTTCTAATTTTATCT GAGAAACTCACGGATGCCATGGTGGGCTTCTAATTTTATCT < 41bp 0.507072442678092 0.712995620955171 NA NA prediction 0.411846356554159 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20648388 chr11:20648387 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_32177 0 0 0 0 1 SLC6A5 chr11:20648388 5'GT 20648388 Upstream 2bp 29549 chr6 117250037 117250037 1 + C T COAD 117250038 + 117250018 117250058 41 CCCCCTACAGTGACATCCACGATCCACTTAACATTTTAGAT CCCCCTACAGTGACATCCATGATCCACTTAACATTTTAGAT < 41bp 0.502260789341682 0.708180551438598 NA NA prediction 0.411839524193832 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117250038 chr6:117250037 synonymous SNV . 0 20 hm7G_associated_SNPs_32182 0 0 0 0 1 RFX6 chr6:117250134 5'GT 117250134 Upstream 98bp 29550 chr2 179197437 179197437 1 + C T UCEC 179197438 + 179197418 179197458 41 GTCAATTAAAAAGAAAGCTCGAAGAATAGACCTTGACACCG GTCAATTAAAAAGAAAGCTTGAAGAATAGACCTTGACACCG < 41bp 0.49892471648088 0.70591925178005 NA NA prediction 0.411838503560099 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179197438 chr2:179197437 stopgain 1.000 1 20 hm7G_associated_SNPs_32183 0 0 1 0 2 OSBPL6 chr2:179197368 3'AG 179197368 Downstream 70bp 29551 chr2 179197437 179197437 1 + C T UCEC 179197438 + 179197418 179197458 41 GTCAATTAAAAAGAAAGCTCGAAGAATAGACCTTGACACCG GTCAATTAAAAAGAAAGCTTGAAGAATAGACCTTGACACCG < 41bp 0.49892471648088 0.70591925178005 NA NA prediction 0.411838503560099 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179197438 chr2:179197437 stopgain 1.000 1 20 hm7G_associated_SNPs_32183 0 0 1 0 2 OSBPL6 chr2:179197481 5'GT 179197481 Upstream 45bp 29552 chr5 176295946 176295946 1 + C T UCEC 176295947 + 176295927 176295967 41 CACGTCGCCGCAGCGCCTCCGCTGCTGTCATCGTCTACGGT CACGTCGCCGCAGCGCCTCTGCTGCTGTCATCGTCTACGGT < 41bp 0.530753522314451 0.736672651553125 NA NA prediction 0.411838258477348 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295947 chr5:176295946 synonymous SNV . 0 20 hm7G_associated_SNPs_32184 0 0 0 0 1 UNC5A chr5:176295965 5'GT 176295965 Upstream 20bp 29553 chr2 166166923 166166923 1 + C T COAD 166166924 + 166166904 166166944 41 TTCTGTCTAAGCGTGTTTGCGCTAATAGGATTGCAGTTGTT TTCTGTCTAAGCGTGTTTGTGCTAATAGGATTGCAGTTGTT < 41bp 0.508663075001695 0.714578350750627 NA NA prediction 0.411830551497863 Functional Gain - SCN2A ENSG00000136531 CDS Human protein_coding chr2:166166924 chr2:166166923 nonsynonymous SNV 0.859 5 20 hm7G_associated_SNPs_32185 4 0 0 0 1 SCN2A chr2:166166833 3'AG 166166833 Downstream 91bp 29554 chr15 73023682 73023682 1 + G A rs34620165 73023683 + 73023663 73023703 41 CAGCATGATGCAGACCCACGGGGACTTTGATGTTGCCCTCA CAGCATGATGCAGACCCACAGGGACTTTGATGTTGCCCTCA < 41bp 0.523656508918245 0.729570828049221 NA NA prediction 0.411828638261952 Functional Gain - BBS4 ENSG00000140463 CDS Human protein_coding chr15:73023683 chr15:73023682 nonsynonymous SNV 0.938 1 20 hm7G_associated_SNPs_32186 1 0 1 0 1 BBS4 chr15:73023646 3'AG 73023646 Downstream 37bp 29555 chr5 149919738 149919738 1 + C T UCEC 149919739 + 149919719 149919759 41 CGCTTCCTGCACTCCTGGACGAACCTCCGGCTGCAGACACT CGCTTCCTGCACTCCTGGATGAACCTCCGGCTGCAGACACT < 41bp 0.541674751193606 0.747588327083619 NA NA prediction 0.411827151780026 Functional Gain - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149919739 chr5:149919738 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_32187 0 0 1 0 2 NDST1 chr5:149919644 3'AG 149919644 Downstream 95bp 29556 chr5 149919738 149919738 1 + C T UCEC 149919739 + 149919719 149919759 41 CGCTTCCTGCACTCCTGGACGAACCTCCGGCTGCAGACACT CGCTTCCTGCACTCCTGGATGAACCTCCGGCTGCAGACACT < 41bp 0.541674751193606 0.747588327083619 NA NA prediction 0.411827151780026 Functional Gain - NDST1 ENSG00000070614 CDS Human protein_coding chr5:149919739 chr5:149919738 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_32187 0 0 1 0 2 NDST1 chr5:149919826 5'GT 149919826 Upstream 89bp 29557 chr5 68805174 68805174 1 + C T GBM 68805175 + 68805155 68805195 41 TTTGCCTGTGTGGCCTCCACGCTTGCCTGGGACAGAGGCTA TTTGCCTGTGTGGCCTCCATGCTTGCCTGGGACAGAGGCTA < 41bp 0.525324054240179 0.731237340214497 NA NA prediction 0.411826571948636 Functional Gain - OCLN ENSG00000197822 CDS Human protein_coding chr5:68805175 chr5:68805174 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_32189 0 0 1 0 1 OCLN chr5:68805215 5'GT 68805215 Upstream 42bp 29558 chrX 9661224 9661224 1 + C T COAD 9661225 + 9661205 9661245 41 TGGCTACGGGTTCATATGACGGTTTTGCAAGAATATGGACG TGGCTACGGGTTCATATGATGGTTTTGCAAGAATATGGACG < 41bp 0.486449283881325 0.705911699940127 NA NA prediction 0.411823399880254 Functional Gain - TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661225 chrX:9661224 synonymous SNV . 0 20 hm7G_associated_SNPs_32192 0 0 1 0 2 TBL1X chrX:9661189 3'AG 9661189 Downstream 36bp 29559 chrX 9661224 9661224 1 + C T COAD 9661225 + 9661205 9661245 41 TGGCTACGGGTTCATATGACGGTTTTGCAAGAATATGGACG TGGCTACGGGTTCATATGATGGTTTTGCAAGAATATGGACG < 41bp 0.486449283881325 0.705911699940127 NA NA prediction 0.411823399880254 Functional Gain - TBL1X ENSG00000101849 CDS Human protein_coding chrX:9661225 chrX:9661224 synonymous SNV . 0 20 hm7G_associated_SNPs_32192 0 0 1 0 2 TBL1X chrX:9661252 5'GT 9661252 Upstream 29bp 29560 chr12 110475221 110475221 1 + C T rs199565526 110475222 + 110475202 110475242 41 TGTGCCCCAGCGCCCTGAGCGAGACAAGCCGTTTTGATAAT TGTGCCCCAGCGCCCTGAGTGAGACAAGCCGTTTTGATAAT < 41bp 0.508560575497181 0.714470625297999 NA NA prediction 0.411820099601636 Functional Gain - ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110475222 chr12:110475221 synonymous SNV . 0 20 hm7G_associated_SNPs_32194 0 0 0 0 1 ANKRD13A chr12:110475164 3'AG 110475164 Downstream 58bp 29561 chr2 242343285 242343285 1 + C T UCEC 242343286 + 242343266 242343306 41 ACTGACACAAGTGTGGAAGCGTTTAAACCTGGTAGAATGTG ACTGACACAAGTGTGGAAGTGTTTAAACCTGGTAGAATGTG < 41bp 0.50686622308464 0.712775987391448 NA NA prediction 0.411819528613617 Functional Gain - FARP2 ENSG00000006607 CDS Human protein_coding chr2:242343286 chr2:242343285 nonsynonymous SNV 0.146 2 20 hm7G_associated_SNPs_32195 0 0 1 0 2 FARP2 chr2:242343243 3'AG 242343243 Downstream 43bp 29562 chr2 242343285 242343285 1 + C T UCEC 242343286 + 242343266 242343306 41 ACTGACACAAGTGTGGAAGCGTTTAAACCTGGTAGAATGTG ACTGACACAAGTGTGGAAGTGTTTAAACCTGGTAGAATGTG < 41bp 0.50686622308464 0.712775987391448 NA NA prediction 0.411819528613617 Functional Gain - FARP2 ENSG00000006607 CDS Human protein_coding chr2:242343286 chr2:242343285 nonsynonymous SNV 0.146 2 20 hm7G_associated_SNPs_32195 0 0 1 0 2 FARP2 chr2:242343347 5'GT 242343347 Upstream 63bp 29563 chr1 156883829 156883829 1 + C T UCEC 156883830 + 156883810 156883850 41 GTTCTGGGACAGCCAGAGGCGGCGGCAACCCCAGCCACAGA GTTCTGGGACAGCCAGAGGTGGCGGCAACCCCAGCCACAGA < 41bp 0.515676920657381 0.721586412813138 NA NA prediction 0.411818984311515 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883830 chr1:156883829 nonsynonymous SNV 0.022 2 20 hm7G_associated_SNPs_32196 0 0 0 0 1 PEAR1 chr1:156883892 5'GT 156883892 Upstream 64bp 29564 chr17 2282421 2282421 1 + C T STAD 2282422 + 2282402 2282442 41 TTGTCCTGTTCATCGCCCTCGCCCTGGTGGAGGCCTACCGA TTGTCCTGTTCATCGCCCTTGCCCTGGTGGAGGCCTACCGA < 41bp 0.509832737302523 0.715738313275366 NA NA prediction 0.411811151945687 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2282422 chr17:2282421 synonymous SNV . 0 20 hm7G_associated_SNPs_32199 0 0 1 0 2 SGSM2 chr17:2282330 3'AG 2282330 Downstream 92bp 29565 chr17 2282421 2282421 1 + C T STAD 2282422 + 2282402 2282442 41 TTGTCCTGTTCATCGCCCTCGCCCTGGTGGAGGCCTACCGA TTGTCCTGTTCATCGCCCTTGCCCTGGTGGAGGCCTACCGA < 41bp 0.509832737302523 0.715738313275366 NA NA prediction 0.411811151945687 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2282422 chr17:2282421 synonymous SNV . 0 20 hm7G_associated_SNPs_32199 0 0 1 0 2 SGSM2 chr17:2282497 5'GT 2282497 Upstream 77bp 29566 chr11 63764047 63764047 1 + G A STAD 63764048 + 63764028 63764068 41 CCGCAAGACCAGGCCTGACGGCAACTGTTTCTATCGGGCTT CCGCAAGACCAGGCCTGACAGCAACTGTTTCTATCGGGCTT < 41bp 0.556217092711268 0.762121067395753 NA NA prediction 0.411807949368971 Functional Gain - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764048 chr11:63764047 nonsynonymous SNV 0.929 4 20 hm7G_associated_SNPs_32200 0 0 1 0 2 OTUB1 chr11:63764002 3'AG 63764002 Downstream 46bp 29567 chr11 63764047 63764047 1 + G A STAD 63764048 + 63764028 63764068 41 CCGCAAGACCAGGCCTGACGGCAACTGTTTCTATCGGGCTT CCGCAAGACCAGGCCTGACAGCAACTGTTTCTATCGGGCTT < 41bp 0.556217092711268 0.762121067395753 NA NA prediction 0.411807949368971 Functional Gain - OTUB1 ENSG00000167770 CDS Human protein_coding chr11:63764048 chr11:63764047 nonsynonymous SNV 0.929 4 20 hm7G_associated_SNPs_32200 0 0 1 0 2 OTUB1 chr11:63764120 5'GT 63764120 Upstream 74bp 29568 chr15 91433462 91433462 1 + C T HNSC 91433463 + 91433443 91433483 41 CTGGGCCCCGGCGAGCCCCCGCCTGTGCTGCTCCTGCAGGA CTGGGCCCCGGCGAGCCCCTGCCTGTGCTGCTCCTGCAGGA < 41bp 0.519585961399 0.725489432025104 NA NA prediction 0.411806941252207 Functional Gain - FES ENSG00000182511 CDS Human protein_coding chr15:91433463 chr15:91433462 nonsynonymous SNV 0.034 4 20 hm7G_associated_SNPs_32201 0 0 0 0 1 FES chr15:91433508 5'GT 91433508 Upstream 47bp 29569 chr6 170667345 170667345 1 + C T STAD 170667346 + 170667326 170667366 41 TGCCTGGAGGATTTGCATGCGTTTATTGCGCAGGCCTTGTG TGCCTGGAGGATTTGCATGTGTTTATTGCGCAGGCCTTGTG < 41bp 0.531065611157376 0.736967835863851 NA NA prediction 0.411804449412949 Functional Gain - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170667346 chr6:170667345 nonsynonymous SNV 0.161 4 20 hm7G_associated_SNPs_32203 0 0 0 0 2 FAM120B chr6:170667314 3'AG 170667314 Downstream 32bp 29570 chr6 170667345 170667345 1 + C T STAD 170667346 + 170667326 170667366 41 TGCCTGGAGGATTTGCATGCGTTTATTGCGCAGGCCTTGTG TGCCTGGAGGATTTGCATGTGTTTATTGCGCAGGCCTTGTG < 41bp 0.531065611157376 0.736967835863851 NA NA prediction 0.411804449412949 Functional Gain - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170667346 chr6:170667345 nonsynonymous SNV 0.161 4 20 hm7G_associated_SNPs_32203 0 0 0 0 2 FAM120B chr6:170667406 5'GT 170667406 Upstream 62bp 29571 chr1 12017970 12017970 1 + C T PRAD 12017971 + 12017951 12017991 41 CAGGCTGCACCGTGTGTGACGAAGGCTTGCGCAGCCTCAAG CAGGCTGCACCGTGTGTGATGAAGGCTTGCGCAGCCTCAAG < 41bp 0.545280940154398 0.751181549769742 NA NA prediction 0.411801219230688 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12017971 chr1:12017970 synonymous SNV . 0 20 hm7G_associated_SNPs_32206 0 0 1 0 2 PLOD1 chr1:12017899 3'AG 12017899 Downstream 72bp 29572 chr1 12017970 12017970 1 + C T PRAD 12017971 + 12017951 12017991 41 CAGGCTGCACCGTGTGTGACGAAGGCTTGCGCAGCCTCAAG CAGGCTGCACCGTGTGTGATGAAGGCTTGCGCAGCCTCAAG < 41bp 0.545280940154398 0.751181549769742 NA NA prediction 0.411801219230688 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12017971 chr1:12017970 synonymous SNV . 0 20 hm7G_associated_SNPs_32206 0 0 1 0 2 PLOD1 chr1:12018000 5'GT 12018000 Upstream 31bp 29573 chr3 183778032 183778032 1 + G A SKCM 183778033 + 183778013 183778053 41 GGACAAAGACCCAGCTAATGGAGCTGTGGGTGCAGTTCAGC GGACAAAGACCCAGCTAATAGAGCTGTGGGTGCAGTTCAGC < 41bp 0.506232367174073 0.71213244892349 NA NA prediction 0.411800163498834 Functional Gain - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183778033 chr3:183778032 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_32207 0 0 0 0 1 HTR3C chr3:183777938 3'AG 183777938 Downstream 95bp 29574 chr16 19702685 19702685 1 + C T LUAD 19702686 + 19702666 19702706 41 GTTCAACAGTGGACTCCAACGACAGCCTCTACGGGGGAGAC GTTCAACAGTGGACTCCAATGACAGCCTCTACGGGGGAGAC < 41bp 0.528865061312163 0.734763800816397 NA NA prediction 0.411797479008468 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19702686 chr16:19702685 synonymous SNV . 0 20 hm7G_associated_SNPs_32208 0 0 0 0 1 C16orf62 chr16:19702675 3'AG 19702675 Downstream 11bp 29575 chr16 67916188 67916188 1 + G A COAD 67916189 + 67916169 67916209 41 CCAAGCTCACAGCTGTGGAGGGCAGCATGAAAGAGAACATC CCAAGCTCACAGCTGTGGAAGGCAGCATGAAAGAGAACATC < 41bp 0.488096460220919 0.705897178160662 NA NA prediction 0.411794356321324 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67916189 chr16:67916188 synonymous SNV . 0 20 hm7G_associated_SNPs_32209 0 0 0 0 2 EDC4 chr16:67916115 3'AG 67916115 Downstream 74bp 29576 chr16 67916188 67916188 1 + G A COAD 67916189 + 67916169 67916209 41 CCAAGCTCACAGCTGTGGAGGGCAGCATGAAAGAGAACATC CCAAGCTCACAGCTGTGGAAGGCAGCATGAAAGAGAACATC < 41bp 0.488096460220919 0.705897178160662 NA NA prediction 0.411794356321324 Functional Gain - EDC4 ENSG00000038358 CDS Human protein_coding chr16:67916189 chr16:67916188 synonymous SNV . 0 20 hm7G_associated_SNPs_32209 0 0 0 0 2 EDC4 chr16:67916230 5'GT 67916230 Upstream 43bp 29577 chr19 39591641 39591641 1 + G A COAD 39591642 + 39591622 39591662 41 ATCATCACTATGGGGCACCGGCCCATGTACTGCTCCAACGC ATCATCACTATGGGGCACCAGCCCATGTACTGCTCCAACGC < 41bp 0.548126291822785 0.754022455048547 NA NA prediction 0.411792326451524 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39591642 chr19:39591641 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_32210 0 0 0 0 2 ACP7 chr19:39591589 3'AG 39591589 Downstream 53bp 29578 chr19 39591641 39591641 1 + G A COAD 39591642 + 39591622 39591662 41 ATCATCACTATGGGGCACCGGCCCATGTACTGCTCCAACGC ATCATCACTATGGGGCACCAGCCCATGTACTGCTCCAACGC < 41bp 0.548126291822785 0.754022455048547 NA NA prediction 0.411792326451524 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39591642 chr19:39591641 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_32210 0 0 0 0 2 ACP7 chr19:39591696 5'GT 39591696 Upstream 56bp 29579 chr12 110618233 110618233 1 + C T COAD 110618234 + 110618214 110618254 41 GTTTTTTTTACAGTTCAAACGATATGTCAATAAACTTCGAA GTTTTTTTTACAGTTCAAATGATATGTCAATAAACTTCGAA < 41bp 0.511843238554841 0.717735676375136 NA NA prediction 0.411784875640591 Functional Gain - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110618234 chr12:110618233 stopgain 0.996 1 20 hm7G_associated_SNPs_32212 0 0 0 0 1 IFT81 chr12:110618227 3'AG 110618227 Downstream 7bp 29580 chr19 36370039 36370039 1 + G A LUSC 36370040 + 36370020 36370060 41 GCTGATCATGGGAGCGGGCGGAGGCTCCCTCATCGTCCTCT GCTGATCATGGGAGCGGGCAGAGGCTCCCTCATCGTCCTCT < 41bp 0.495021486812583 0.705892294780659 NA NA prediction 0.411784589561319 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370040 chr19:36370039 nonsynonymous SNV 0.731 2 20 hm7G_associated_SNPs_32213 0 0 1 0 2 APLP1 chr19:36369976 3'AG 36369976 Downstream 64bp 29581 chr19 36370039 36370039 1 + G A LUSC 36370040 + 36370020 36370060 41 GCTGATCATGGGAGCGGGCGGAGGCTCCCTCATCGTCCTCT GCTGATCATGGGAGCGGGCAGAGGCTCCCTCATCGTCCTCT < 41bp 0.495021486812583 0.705892294780659 NA NA prediction 0.411784589561319 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370040 chr19:36370039 nonsynonymous SNV 0.731 2 20 hm7G_associated_SNPs_32213 0 0 1 0 2 APLP1 chr19:36370119 5'GT 36370119 Upstream 81bp 29582 chr1 206651107 206651107 1 + G A rs2297545 206651108 + 206651088 206651128 41 GCAGGTACCGGATCACCACGGAGAAGCCGGCTGGGGCCATT GCAGGTACCGGATCACCACAGAGAAGCCGGCTGGGGCCATT < 41bp 0.556812314554595 0.762704462375725 NA NA prediction 0.41178429564226 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206651108 chr1:206651107 synonymous SNV . 0 20 hm7G_associated_SNPs_32214 0 0 0 0 2 IKBKE chr1:206651092 3'AG 206651092 Downstream 16bp 29583 chr1 206651107 206651107 1 + G A rs2297545 206651108 + 206651088 206651128 41 GCAGGTACCGGATCACCACGGAGAAGCCGGCTGGGGCCATT GCAGGTACCGGATCACCACAGAGAAGCCGGCTGGGGCCATT < 41bp 0.556812314554595 0.762704462375725 NA NA prediction 0.41178429564226 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206651108 chr1:206651107 synonymous SNV . 0 20 hm7G_associated_SNPs_32214 0 0 0 0 2 IKBKE chr1:206651202 5'GT 206651202 Upstream 96bp 29584 chr10 114173039 114173039 1 + C T STAD 114173040 + 114173020 114173060 41 ATTGTTTCCCGCGGTGCCTCGACTCCTTAACAGGATCTACG ATTGTTTCCCGCGGTGCCTTGACTCCTTAACAGGATCTACG < 41bp 0.537275408518135 0.743166794272473 NA NA prediction 0.411782771508675 Functional Gain - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114173040 chr10:114173039 stopgain 0.970 1 20 hm7G_associated_SNPs_32216 0 0 1 0 1 ACSL5 chr10:114173065 5'GT 114173065 Upstream 27bp 29585 chr17 79204412 79204412 1 - G A HNSC 79204411 - 79204391 79204431 41 CCAGGAGCACATCCTCCTCCGCACCCGGCCGTGGCTGCAGG CCAGGAGCACATCCTCCTCTGCACCCGGCCGTGGCTGCAGG < 41bp 0.522117015164355 0.728008030334021 NA NA prediction 0.411782030339332 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79204411 chr17:79204412 nonsynonymous SNV 0.087 1 20 hm7G_associated_SNPs_32217 0 0 0 0 2 TEPSIN chr17:79204344 5'GT 79204344 Upstream 69bp 29586 chr17 79204412 79204412 1 - G A HNSC 79204411 - 79204391 79204431 41 CCAGGAGCACATCCTCCTCCGCACCCGGCCGTGGCTGCAGG CCAGGAGCACATCCTCCTCTGCACCCGGCCGTGGCTGCAGG < 41bp 0.522117015164355 0.728008030334021 NA NA prediction 0.411782030339332 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79204411 chr17:79204412 nonsynonymous SNV 0.087 1 20 hm7G_associated_SNPs_32217 0 0 0 0 2 TEPSIN chr17:79204478 3'AG 79204478 Downstream 67bp 29587 chr10 26589804 26589804 1 + C T PRAD 26589805 + 26589785 26589825 41 AGACAAGGTCAATTTCTTCCGCATGGTCATCTCAAACCCAG AGACAAGGTCAATTTCTTCTGCATGGTCATCTCAAACCCAG < 41bp 0.513284901648473 0.719173340919252 NA NA prediction 0.411776878541559 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26589805 chr10:26589804 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32219 0 0 0 0 1 GAD2 chr10:26589717 3'AG 26589717 Downstream 88bp 29588 chr8 110563072 110563072 1 + C T COAD 110563073 + 110563053 110563093 41 CATGGCCATCACCCAGTTTCGGTTATTTAAATTTTGTACCT CATGGCCATCACCCAGTTTTGGTTATTTAAATTTTGTACCT < 41bp 0.522475279090566 0.728363547630186 NA NA prediction 0.411776537079241 Functional Gain - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110563073 chr8:110563072 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32220 0 0 1 0 2 EBAG9 chr8:110563039 3'AG 110563039 Downstream 34bp 29589 chr8 110563072 110563072 1 + C T COAD 110563073 + 110563053 110563093 41 CATGGCCATCACCCAGTTTCGGTTATTTAAATTTTGTACCT CATGGCCATCACCCAGTTTTGGTTATTTAAATTTTGTACCT < 41bp 0.522475279090566 0.728363547630186 NA NA prediction 0.411776537079241 Functional Gain - EBAG9 ENSG00000147654 CDS Human protein_coding chr8:110563073 chr8:110563072 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32220 0 0 1 0 2 EBAG9 chr8:110563136 5'GT 110563136 Upstream 65bp 29590 chr16 72141562 72141562 1 + G A ESCA 72141563 + 72141543 72141583 41 GGTGGTCTGACCTCTACCGGGCGGCTGATGGTGGAGTTCCC GGTGGTCTGACCTCTACCGAGCGGCTGATGGTGGAGTTCCC < 41bp 0.541750537392656 0.747638206998359 NA NA prediction 0.411775339211408 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141563 chr16:72141562 nonsynonymous SNV 0.868 4 20 hm7G_associated_SNPs_32221 0 0 1 0 1 DHX38 chr16:72141544 3'AG 72141544 Downstream 19bp 29591 chr1 156621427 156621427 1 + G A PAAD 156621428 + 156621408 156621448 41 CCCCATCATGGAGGACGGAGGAGGTGGAAGCTCCACTCCAG CCCCATCATGGAGGACGGAAGAGGTGGAAGCTCCACTCCAG < 41bp 0.492239271251733 0.705883844576427 NA NA prediction 0.411767689152855 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156621428 chr1:156621427 nonsynonymous SNV 0.957 1 20 hm7G_associated_SNPs_32223 0 0 0 0 1 BCAN chr1:156621481 5'GT 156621481 Upstream 55bp 29592 chr22 35729411 35729411 1 + C T COAD 35729412 + 35729392 35729432 41 ACCAGGCCCCAAGTGAGGCCGAGCCGGCAGCTGACCTGATC ACCAGGCCCCAAGTGAGGCTGAGCCGGCAGCTGACCTGATC < 41bp 0.50624902142722 0.712129994001277 NA NA prediction 0.411761945148116 Functional Gain - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35729412 chr22:35729411 synonymous SNV . 0 20 hm7G_associated_SNPs_32225 0 0 1 0 2 TOM1 chr22:35729397 3'AG 35729397 Downstream 15bp 29593 chr22 35729411 35729411 1 + C T COAD 35729412 + 35729392 35729432 41 ACCAGGCCCCAAGTGAGGCCGAGCCGGCAGCTGACCTGATC ACCAGGCCCCAAGTGAGGCTGAGCCGGCAGCTGACCTGATC < 41bp 0.50624902142722 0.712129994001277 NA NA prediction 0.411761945148116 Functional Gain - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35729412 chr22:35729411 synonymous SNV . 0 20 hm7G_associated_SNPs_32225 0 0 1 0 2 TOM1 chr22:35729490 5'GT 35729490 Upstream 80bp 29594 chr5 5303423 5303423 1 + C T CESC 5303424 + 5303404 5303444 41 CCTGCAGTCGGACGTGTGGCGGGGGTGCCCAGAGCCGCCCC CCTGCAGTCGGACGTGTGGTGGGGGTGCCCAGAGCCGCCCC < 41bp 0.516150212053894 0.722028344280891 NA NA prediction 0.411756264453993 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5303424 chr5:5303423 synonymous SNV . 0 20 hm7G_associated_SNPs_32227 0 0 0 0 1 ADAMTS16 chr5:5303381 3'AG 5303381 Downstream 43bp 29595 chr16 68104843 68104843 1 + C T PRAD 68104844 + 68104824 68104864 41 CCCTCTGGTTGCTTTTTAGCGGAGGATCTCATGACCACATC CCCTCTGGTTGCTTTTTAGTGGAGGATCTCATGACCACATC < 41bp 0.529092385303145 0.734970181974473 NA NA prediction 0.411755593342656 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68104844 chr16:68104843 synonymous SNV . 0 20 hm7G_associated_SNPs_32228 0 0 1 0 1 DUS2 chr16:68104843 3'AG 68104843 Downstream 1bp 29596 chr19 13084239 13084239 1 + C T GBM 13084240 + 13084220 13084260 41 CTGCTCAGCCATACGCCTCCGAAATCATCTGTGCTTTGGTC CTGCTCAGCCATACGCCTCTGAAATCATCTGTGCTTTGGTC < 41bp 0.505260353584082 0.711135143069869 NA NA prediction 0.411749578971574 Functional Gain - DAND5 ENSG00000179284 CDS Human protein_coding chr19:13084240 chr19:13084239 stopgain 0.009 0 20 hm7G_associated_SNPs_32229 0 0 0 0 1 DAND5 chr19:13084203 3'AG 13084203 Downstream 37bp 29597 chr22 32000930 32000930 1 + C T rs35047625 32000931 + 32000911 32000951 41 GCACAACAGGCAGCTGCTGCGGTGAGTCTCCCGGGCGCCTC GCACAACAGGCAGCTGCTGTGGTGAGTCTCCCGGGCGCCTC < 41bp 0.495136169791904 0.705874761897934 NA NA prediction 0.411749523795868 Functional Gain - SFI1 ENSG00000198089 CDS Human protein_coding chr22:32000931 chr22:32000930 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_32230 0 0 1 0 1 SFI1 chr22:32000855 3'AG 32000855 Downstream 76bp 29598 chr5 176017444 176017444 1 + G T UCEC 176017445 + 176017425 176017465 41 GGATGATCCGGAATGATCAGGACTCGCTGACGCAGCTGCTG GGATGATCCGGAATGATCATGACTCGCTGACGCAGCTGCTG < 41bp 0.357280426771966 0.705872057349876 NA NA prediction 0.411744114699752 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176017445 chr5:176017444 nonsynonymous SNV 0.126 0 20 hm7G_associated_SNPs_32231 0 0 1 0 2 CDHR2 chr5:176017426 3'AG 176017426 Downstream 19bp 29599 chr5 176017444 176017444 1 + G T UCEC 176017445 + 176017425 176017465 41 GGATGATCCGGAATGATCAGGACTCGCTGACGCAGCTGCTG GGATGATCCGGAATGATCATGACTCGCTGACGCAGCTGCTG < 41bp 0.357280426771966 0.705872057349876 NA NA prediction 0.411744114699752 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176017445 chr5:176017444 nonsynonymous SNV 0.126 0 20 hm7G_associated_SNPs_32231 0 0 1 0 2 CDHR2 chr5:176017486 5'GT 176017486 Upstream 43bp 29600 chr12 110454197 110454197 1 + C T UCEC 110454198 + 110454178 110454218 41 TTGTCTGCCCTTCAGGCTCCGGATTTCTATGTGCAGATGAA TTGTCTGCCCTTCAGGCTCTGGATTTCTATGTGCAGATGAA < 41bp 0.545767545589907 0.751635976601307 NA NA prediction 0.411736862022799 Functional Gain - ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110454198 chr12:110454197 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_32232 0 0 1 1 2 ANKRD13A chr12:110454193 3'AG 110454193 Downstream 5bp 29601 chr12 110454197 110454197 1 + C T UCEC 110454198 + 110454178 110454218 41 TTGTCTGCCCTTCAGGCTCCGGATTTCTATGTGCAGATGAA TTGTCTGCCCTTCAGGCTCTGGATTTCTATGTGCAGATGAA < 41bp 0.545767545589907 0.751635976601307 NA NA prediction 0.411736862022799 Functional Gain - ANKRD13A ENSG00000076513 CDS Human protein_coding chr12:110454198 chr12:110454197 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_32232 0 0 1 1 2 ANKRD13A chr12:110454238 5'GT 110454238 Upstream 42bp 29602 chr19 1978701 1978701 1 + C T COAD 1978702 + 1978682 1978722 41 AGGACCTGTTCGACCTGTGCGACCGGACCTTCACGCTCAAG AGGACCTGTTCGACCTGTGTGACCGGACCTTCACGCTCAAG < 41bp 0.527536340902673 0.733403643278973 NA NA prediction 0.4117346047526 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1978702 chr19:1978701 synonymous SNV . 0 20 hm7G_associated_SNPs_32233 0 0 1 0 1 CSNK1G2 chr19:1978749 5'GT 1978749 Upstream 49bp 29603 chr20 55905032 55905032 1 + G A HNSC 55905033 + 55905013 55905053 41 TGGCAGGGAGCCCCCAACTGGGGGAAGCCGCCTGGCCTCCA TGGCAGGGAGCCCCCAACTAGGGGAAGCCGCCTGGCCTCCA < 41bp 0.513819108751426 0.719686326979885 NA NA prediction 0.411734436456919 Functional Gain - SPO11 ENSG00000054796 CDS Human protein_coding chr20:55905033 chr20:55905032 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_32234 0 0 0 0 1 SPO11 chr20:55905054 5'GT 55905054 Upstream 23bp 29604 chr19 6147599 6147599 1 + C T ESCA 6147600 + 6147580 6147620 41 TTGGAACTTATCCAGCCCTCGCATCCAAGAATGGCAAAAAG TTGGAACTTATCCAGCCCTTGCATCCAAGAATGGCAAAAAG < 41bp 0.535066576920218 0.740933660320319 NA NA prediction 0.411734166800201 Functional Gain - ACSBG2 ENSG00000130377 CDS Human protein_coding chr19:6147600 chr19:6147599 synonymous SNV . 0 20 hm7G_associated_SNPs_32235 0 0 0 0 1 ACSBG2 chr19:6147686 5'GT 6147686 Upstream 88bp 29605 chr1 203678585 203678585 1 + C T UCEC 203678586 + 203678566 203678606 41 GTACACCTTTAACTCAGTGCGCAAGTCAATGAGCACCGTCA GTACACCTTTAACTCAGTGTGCAAGTCAATGAGCACCGTCA < 41bp 0.531875910436447 0.737741378844478 NA NA prediction 0.411730936816063 Functional Gain - ATP2B4 ENSG00000058668 CDS Human protein_coding chr1:203678586 chr1:203678585 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_32236 0 0 0 0 1 ATP2B4 chr1:203678670 5'GT 203678670 Upstream 86bp 29606 chr17 72340934 72340934 1 + G A SKCM 72340935 + 72340915 72340955 41 ATGAAGGGGAACCGGCAGAGGACCCAGGAGCCCACGGCCGC ATGAAGGGGAACCGGCAGAAGACCCAGGAGCCCACGGCCGC < 41bp 0.487832564121612 0.705863928314807 NA NA prediction 0.411727856629614 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72340935 chr17:72340934 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_32237 0 0 0 0 1 KIF19 chr17:72340900 3'AG 72340900 Downstream 35bp 29607 chr20 3003413 3003413 1 + C T UCEC 3003414 + 3003394 3003434 41 ATACAGAACGGAAGGTGGACGTGTATGGCTTTGTGAGCCGG ATACAGAACGGAAGGTGGATGTGTATGGCTTTGTGAGCCGG < 41bp 0.500737790185516 0.706600883618795 NA NA prediction 0.411726186866557 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3003414 chr20:3003413 synonymous SNV . 0 20 hm7G_associated_SNPs_32238 0 0 1 0 2 PTPRA chr20:3003335 3'AG 3003335 Downstream 79bp 29608 chr20 3003413 3003413 1 + C T UCEC 3003414 + 3003394 3003434 41 ATACAGAACGGAAGGTGGACGTGTATGGCTTTGTGAGCCGG ATACAGAACGGAAGGTGGATGTGTATGGCTTTGTGAGCCGG < 41bp 0.500737790185516 0.706600883618795 NA NA prediction 0.411726186866557 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3003414 chr20:3003413 synonymous SNV . 0 20 hm7G_associated_SNPs_32238 0 0 1 0 2 PTPRA chr20:3003470 5'GT 3003470 Upstream 58bp 29609 chr10 124152795 124152795 1 + C T COAD 124152796 + 124152776 124152816 41 AAACAGTGGGAAATTTCTTCGAAGGTACTTCATACTGGATA AAACAGTGGGAAATTTCTTTGAAGGTACTTCATACTGGATA < 41bp 0.494791492417865 0.705861503857194 NA NA prediction 0.411723007714389 Functional Gain - PLEKHA1 ENSG00000107679 CDS Human protein_coding chr10:124152796 chr10:124152795 stopgain 1.000 1 20 hm7G_associated_SNPs_32240 0 0 1 0 1 PLEKHA1 chr10:124152857 5'GT 124152857 Upstream 63bp 29610 chr15 101595206 101595206 1 + C T GBM 101595207 + 101595187 101595227 41 AAAAAATAGCCTACCAGATCGCCTCGGGCCTGGCCTACCTG AAAAAATAGCCTACCAGATTGCCTCGGGCCTGGCCTACCTG < 41bp 0.529967298324486 0.735827343998567 NA NA prediction 0.411720091348163 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101595207 chr15:101595206 synonymous SNV . 0 20 hm7G_associated_SNPs_32242 0 0 0 0 1 LRRK1 chr15:101595151 3'AG 101595151 Downstream 56bp 29611 chr21 44317080 44317080 1 + C T rs148054698 44317081 + 44317061 44317101 41 TTTCGAGGACTTGCTTCTACGGTTTCTTTGTCTGCGGAATC TTTCGAGGACTTGCTTCTATGGTTTCTTTGTCTGCGGAATC < 41bp 0.535993324111257 0.741852114505316 NA NA prediction 0.411717580788118 Functional Gain - NDUFV3 ENSG00000160194 CDS Human protein_coding chr21:44317081 chr21:44317080 nonsynonymous SNV 0.019 3 20 hm7G_associated_SNPs_32243 0 0 1 0 2 NDUFV3 chr21:44317037 3'AG 44317037 Downstream 44bp 29612 chr21 44317080 44317080 1 + C T rs148054698 44317081 + 44317061 44317101 41 TTTCGAGGACTTGCTTCTACGGTTTCTTTGTCTGCGGAATC TTTCGAGGACTTGCTTCTATGGTTTCTTTGTCTGCGGAATC < 41bp 0.535993324111257 0.741852114505316 NA NA prediction 0.411717580788118 Functional Gain - NDUFV3 ENSG00000160194 CDS Human protein_coding chr21:44317081 chr21:44317080 nonsynonymous SNV 0.019 3 20 hm7G_associated_SNPs_32243 0 0 1 0 2 NDUFV3 chr21:44317157 5'GT 44317157 Upstream 78bp 29613 chr10 71835544 71835544 1 + G A SKCM 71835545 + 71835525 71835565 41 CAAGTACCGGATCAGCGTGGGCGCCCCTGTCTACATGGCGG CAAGTACCGGATCAGCGTGAGCGCCCCTGTCTACATGGCGG < 41bp 0.491215614421459 0.705856686923848 NA NA prediction 0.411713373847697 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71835545 chr10:71835544 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_32245 0 0 0 0 1 H2AFY2 chr10:71835586 5'GT 71835586 Upstream 43bp 29614 chr8 382932 382932 1 + G T UCEC 382933 + 382913 382953 41 TCCATAAAGAAAGCACAAAGGAAGTAAGTATTCTATTATAA TCCATAAAGAAAGCACAAATGAAGTAAGTATTCTATTATAA < 41bp 0.387644671397793 0.705856039392788 NA NA prediction 0.411712078785576 Functional Gain - FBXO25 ENSG00000147364 CDS Human protein_coding chr8:382933 chr8:382932 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_32248 0 0 0 0 2 FBXO25 chr8:382886 3'AG 382886 Downstream 47bp 29615 chr8 382932 382932 1 + G T UCEC 382933 + 382913 382953 41 TCCATAAAGAAAGCACAAAGGAAGTAAGTATTCTATTATAA TCCATAAAGAAAGCACAAATGAAGTAAGTATTCTATTATAA < 41bp 0.387644671397793 0.705856039392788 NA NA prediction 0.411712078785576 Functional Gain - FBXO25 ENSG00000147364 CDS Human protein_coding chr8:382933 chr8:382932 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_32248 0 0 0 0 2 FBXO25 chr8:382935 5'GT 382935 Upstream 4bp 29616 chr7 129756485 129756485 1 + C T PRAD 129756486 + 129756466 129756506 41 CACAGATGGCTACATGCCCCGGGAATTGGCATCTATGTCAC CACAGATGGCTACATGCCCTGGGAATTGGCATCTATGTCAC < 41bp 0.519214872146354 0.725070588012408 NA NA prediction 0.411711431732109 Functional Gain - KLHDC10 ENSG00000128607 CDS Human protein_coding chr7:129756486 chr7:129756485 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_32249 0 0 1 0 1 KLHDC10 chr7:129756506 5'GT 129756506 Upstream 22bp 29617 chr16 55360499 55360499 1 + G A UCEC 55360500 + 55360480 55360520 41 AGCCCCCCTCACTGTATGGGGCACTGGTGAGTACAGGGGTG AGCCCCCCTCACTGTATGGAGCACTGGTGAGTACAGGGGTG < 41bp 0.573161218440396 0.779016784696913 NA NA prediction 0.411711132513033 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55360500 chr16:55360499 synonymous SNV . 0 20 hm7G_associated_SNPs_32250 0 0 0 0 1 IRX6 chr16:55360505 5'GT 55360505 Upstream 7bp 29618 chr12 3040353 3040353 1 + C T GBM 3040354 + 3040334 3040374 41 GGATAAAAGGGGAATGGATCGGGGTCTCTTCCCCACCTACT GGATAAAAGGGGAATGGATTGGGGTCTCTTCCCCACCTACT < 41bp 0.537718236073781 0.743573603777408 NA NA prediction 0.411710735407254 Functional Gain - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3040354 chr12:3040353 nonsynonymous SNV 0.842 5 20 hm7G_associated_SNPs_32252 0 0 1 1 1 TULP3 chr12:3040406 5'GT 3040406 Upstream 54bp 29619 chr19 48908570 48908570 1 + C T COAD 48908571 + 48908551 48908591 41 TGAGCTCGGCCACGACTGTCGCGCCCAGAACCGCACCCACC TGAGCTCGGCCACGACTGTTGCGCCCAGAACCGCACCCACC < 41bp 0.510173216485632 0.716025197485769 NA NA prediction 0.411703962000274 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48908571 chr19:48908570 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_32254 0 0 0 0 1 GRIN2D chr19:48908610 5'GT 48908610 Upstream 41bp 29620 chr10 116014729 116014729 1 + C T CESC 116014730 + 116014710 116014750 41 TGTTAGATGGGTCTAACAGCGTCGGGAAAGGGAGCTTTGAA TGTTAGATGGGTCTAACAGTGTCGGGAAAGGGAGCTTTGAA < 41bp 0.499088134010611 0.705851594000841 NA NA prediction 0.411703188001683 Functional Gain - VWA2 ENSG00000165816 CDS Human protein_coding chr10:116014730 chr10:116014729 synonymous SNV . 0 20 hm7G_associated_SNPs_32255 0 0 0 0 1 VWA2 chr10:116014674 3'AG 116014674 Downstream 56bp 29621 chr8 9605637 9605637 1 + C T COAD 9605638 + 9605618 9605658 41 GCAGCCCAGAAAGGAAGGACGCAGCTGTGCGCCCTCCTCCT GCAGCCCAGAAAGGAAGGATGCAGCTGTGCGCCCTCCTCCT < 41bp 0.506953751776719 0.712803168703308 NA NA prediction 0.411698833853179 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9605638 chr8:9605637 nonsynonymous SNV 0.709 3 20 hm7G_associated_SNPs_32256 0 0 1 0 1 TNKS chr8:9605722 5'GT 9605722 Upstream 86bp 29622 chr19 55143593 55143593 1 + C T HNSC 55143594 + 55143574 55143614 41 TCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAG TCCGTGGGCCCCGTGAGCCTGAGTCGCAGGTGGTGGTACAG < 41bp 0.497566220394768 0.705849337309927 NA NA prediction 0.411698674619855 Functional Gain - LILRB1 ENSG00000104972 CDS Human protein_coding chr19:55143594 chr19:55143593 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_32257 0 0 0 0 1 LILRB1 chr19:55143688 5'GT 55143688 Upstream 96bp 29623 chr9 127618791 127618791 1 + G A rs117762897 127618792 + 127618772 127618812 41 GTACACATCTGGGACCTGCGGATGGTGACCCCAGCAGTCTC GTACACATCTGGGACCTGCAGATGGTGACCCCAGCAGTCTC < 41bp 0.492548055404952 0.705848076749854 NA NA prediction 0.411696153499708 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618792 chr9:127618791 nonsynonymous SNV 0.845 1 20 hm7G_associated_SNPs_32258 0 0 0 0 2 WDR38 chr9:127618748 3'AG 127618748 Downstream 44bp 29624 chr9 127618791 127618791 1 + G A rs117762897 127618792 + 127618772 127618812 41 GTACACATCTGGGACCTGCGGATGGTGACCCCAGCAGTCTC GTACACATCTGGGACCTGCAGATGGTGACCCCAGCAGTCTC < 41bp 0.492548055404952 0.705848076749854 NA NA prediction 0.411696153499708 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618792 chr9:127618791 nonsynonymous SNV 0.845 1 20 hm7G_associated_SNPs_32258 0 0 0 0 2 WDR38 chr9:127618879 5'GT 127618879 Upstream 89bp 29625 chr5 38370435 38370435 1 + C T COAD 38370436 + 38370416 38370456 41 GTGGACCTCAATCCATGAGCGGATCCAGATGGACTCCATGG GTGGACCTCAATCCATGAGTGGATCCAGATGGACTCCATGG < 41bp 0.525929768045205 0.731776535692982 NA NA prediction 0.411693535295555 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38370436 chr5:38370435 nonsynonymous SNV 0.946 2 20 hm7G_associated_SNPs_32259 0 0 0 0 1 EGFLAM chr5:38370398 3'AG 38370398 Downstream 38bp 29626 chr3 53736796 53736796 1 + C T SKCM 53736797 + 53736777 53736817 41 CAAGCTGAGGACATCGATCCGGAGAATGAGGAAGAAGGAGG CAAGCTGAGGACATCGATCTGGAGAATGAGGAAGAAGGAGG < 41bp 0.531395578521569 0.737239521365694 NA NA prediction 0.411687885688249 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53736797 chr3:53736796 nonsynonymous SNV 0.261 1 20 hm7G_associated_SNPs_32260 0 0 0 0 1 CACNA1D chr3:53736837 5'GT 53736837 Upstream 42bp 29627 chr22 37266489 37266489 1 + G T STAD 37266490 + 37266470 37266510 41 TGCCGGTCTGGGTGCTGATGGATGAGGACGTCCGGATCTTC TGCCGGTCTGGGTGCTGATTGATGAGGACGTCCGGATCTTC < 41bp 0.709325900680161 0.915166746543498 NA NA prediction 0.411681691726675 Functional Gain - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37266490 chr22:37266489 nonsynonymous SNV 0.978 0 20 hm7G_associated_SNPs_32263 0 0 0 0 1 NCF4 chr22:37266457 3'AG 37266457 Downstream 33bp 29628 chr2 96260889 96260889 1 + G T KIRC 96260890 + 96260870 96260910 41 GGAAGAACAGCCTTCCTCTGGAGGGTAAGTATGAGACCGTG GGAAGAACAGCCTTCCTCTTGAGGGTAAGTATGAGACCGTG < 41bp 0.382452354005033 0.705840408443356 NA NA prediction 0.411680816886711 Functional Gain - TRIM43 ENSG00000144015 CDS Human protein_coding chr2:96260890 chr2:96260889 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_32264 0 0 0 0 1 TRIM43 chr2:96260798 3'AG 96260798 Downstream 92bp 29629 chr2 178326699 178326699 1 + C T ESCA 178326700 + 178326680 178326720 41 AGGAGGATGGGTATCTACTCGCGCATCAGGCATGAAGAAGA AGGAGGATGGGTATCTACTTGCGCATCAGGCATGAAGAAGA < 41bp 0.497248133148131 0.70583913759174 NA NA prediction 0.41167827518348 Functional Gain - AGPS ENSG00000018510 CDS Human protein_coding chr2:178326700 chr2:178326699 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_32266 0 0 1 0 2 AGPS chr2:178326621 3'AG 178326621 Downstream 79bp 29630 chr2 178326699 178326699 1 + C T ESCA 178326700 + 178326680 178326720 41 AGGAGGATGGGTATCTACTCGCGCATCAGGCATGAAGAAGA AGGAGGATGGGTATCTACTTGCGCATCAGGCATGAAGAAGA < 41bp 0.497248133148131 0.70583913759174 NA NA prediction 0.41167827518348 Functional Gain - AGPS ENSG00000018510 CDS Human protein_coding chr2:178326700 chr2:178326699 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_32266 0 0 1 0 2 AGPS chr2:178326746 5'GT 178326746 Upstream 48bp 29631 chrX 117529259 117529259 1 + G T COAD 117529260 + 117529240 117529280 41 CTGTAGCAGGTGAAGTGATGGGCCCTCAGAGACCTAGATCC CTGTAGCAGGTGAAGTGATTGGCCCTCAGAGACCTAGATCC < 41bp 0.359429802565444 0.705838635933346 NA NA prediction 0.411677271866692 Functional Gain - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117529260 chrX:117529259 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_32267 0 0 1 0 2 WDR44 chrX:117529212 3'AG 117529212 Downstream 48bp 29632 chrX 117529259 117529259 1 + G T COAD 117529260 + 117529240 117529280 41 CTGTAGCAGGTGAAGTGATGGGCCCTCAGAGACCTAGATCC CTGTAGCAGGTGAAGTGATTGGCCCTCAGAGACCTAGATCC < 41bp 0.359429802565444 0.705838635933346 NA NA prediction 0.411677271866692 Functional Gain - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117529260 chrX:117529259 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_32267 0 0 1 0 2 WDR44 chrX:117529307 5'GT 117529307 Upstream 49bp 29633 chr2 48713892 48713892 1 + G T GBM 48713893 + 48713873 48713913 41 GGCATTAACAAATGGAGCAGGAAAGGTAATTCTCTTCTGGC GGCATTAACAAATGGAGCATGAAAGGTAATTCTCTTCTGGC < 41bp 0.38584143888839 0.705835742990276 NA NA prediction 0.411671485980552 Functional Gain - PPP1R21 ENSG00000162869 CDS Human protein_coding chr2:48713893 chr2:48713892 stopgain 1.000 1 20 hm7G_associated_SNPs_32269 0 0 0 0 1 PPP1R21 chr2:48713897 5'GT 48713897 Upstream 6bp 29634 chr20 32345049 32345049 1 + C T UCEC 32345050 + 32345030 32345070 41 CCAAAGGACCAAACCCCGCCGCCCCCATGACCAGCGCCACC CCAAAGGACCAAACCCCGCTGCCCCCATGACCAGCGCCACC < 41bp 0.496088993602418 0.705835599926683 NA NA prediction 0.411671199853367 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32345050 chr20:32345049 synonymous SNV . 0 20 hm7G_associated_SNPs_32270 0 0 0 0 2 ZNF341 chr20:32344954 3'AG 32344954 Downstream 96bp 29635 chr20 32345049 32345049 1 + C T UCEC 32345050 + 32345030 32345070 41 CCAAAGGACCAAACCCCGCCGCCCCCATGACCAGCGCCACC CCAAAGGACCAAACCCCGCTGCCCCCATGACCAGCGCCACC < 41bp 0.496088993602418 0.705835599926683 NA NA prediction 0.411671199853367 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32345050 chr20:32345049 synonymous SNV . 0 20 hm7G_associated_SNPs_32270 0 0 0 0 2 ZNF341 chr20:32345128 5'GT 32345128 Upstream 80bp 29636 chr16 58552696 58552696 1 + G T HNSC 58552697 + 58552677 58552717 41 GAGGGGGAGATGATAAAAGGGAAGAGGGCAGCCTGACGATC GAGGGGGAGATGATAAAAGTGAAGAGGGCAGCCTGACGATC < 41bp 0.687265024473029 0.89308833728353 NA NA prediction 0.411646625621002 Functional Gain - SETD6 ENSG00000103037 CDS Human protein_coding chr16:58552697 chr16:58552696 nonsynonymous SNV 0.119 0 20 hm7G_associated_SNPs_32278 0 0 0 2 1 SETD6 chr16:58552628 3'AG 58552628 Downstream 69bp 29637 chr7 26678881 26678881 1 + G A rs78525926 26678882 + 26678862 26678902 41 GAGGACACAGAGACAAGGCGGCTACCTGCAAGCCAGGGAGA GAGGACACAGAGACAAGGCAGCTACCTGCAAGCCAGGGAGA < 41bp 0.509033223458599 0.714855917194308 NA NA prediction 0.411645387471419 Functional Gain - C7orf71 ENSG00000222004 CDS Human lincRNA chr7:26678882 chr7:26678881 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_32279 0 0 0 0 1 C7orf71 chr7:26678963 5'GT 26678963 Upstream 83bp 29638 chr11 63974967 63974967 1 + G A PRAD 63974968 + 63974948 63974988 41 GGGGAGTCGCACATCGGCGGGGTGCTCCTGAAGATTGTGGA GGGGAGTCGCACATCGGCGAGGTGCTCCTGAAGATTGTGGA < 41bp 0.477237761325384 0.705821062707421 NA NA prediction 0.411642125414841 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63974968 chr11:63974967 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_32280 0 0 0 0 1 FERMT3 chr11:63974996 5'GT 63974996 Upstream 30bp 29639 chr2 242644135 242644135 1 + G T LUAD 242644136 + 242644116 242644156 41 GAGAGCTGGACCAGAGGACGGAAGGTGGGTTCAGACCTCTC GAGAGCTGGACCAGAGGACTGAAGGTGGGTTCAGACCTCTC < 41bp 0.698131621138637 0.903951273133391 NA NA prediction 0.411639303989508 Functional Gain - ING5 ENSG00000168395 CDS Human protein_coding chr2:242644136 chr2:242644135 synonymous SNV . 0 20 hm7G_associated_SNPs_32283 0 0 1 0 2 ING5 chr2:242644068 3'AG 242644068 Downstream 68bp 29640 chr2 242644135 242644135 1 + G T LUAD 242644136 + 242644116 242644156 41 GAGAGCTGGACCAGAGGACGGAAGGTGGGTTCAGACCTCTC GAGAGCTGGACCAGAGGACTGAAGGTGGGTTCAGACCTCTC < 41bp 0.698131621138637 0.903951273133391 NA NA prediction 0.411639303989508 Functional Gain - ING5 ENSG00000168395 CDS Human protein_coding chr2:242644136 chr2:242644135 synonymous SNV . 0 20 hm7G_associated_SNPs_32283 0 0 1 0 2 ING5 chr2:242644139 5'GT 242644139 Upstream 5bp 29641 chr22 49292667 49292667 1 + G T rs149925895 49292668 + 49292648 49292688 41 ACTGGCTTCAAAAAGATGTGGAGGCTGATGGGGAGGAGGAA ACTGGCTTCAAAAAGATGTTGAGGCTGATGGGGAGGAGGAA < 41bp 0.412494041582768 0.705815207699068 NA NA prediction 0.411630415398136 Functional Gain - LINC01310 ENSG00000205632 ncRNA_exonic Human lincRNA chr22:49292668 chr22:49292667 . . 0 20 hm7G_associated_SNPs_32286 0 1 0 0 1 LINC01310 chr22:49292610 3'AG 49292610 Downstream 58bp 29642 chr1 168282043 168282043 1 + G A KICH 168282044 + 168282024 168282064 41 CCCAGGAGCATTTCTCCTCGGAAACCCAGCTGTGACTTCAC CCCAGGAGCATTTCTCCTCAGAAACCCAGCTGTGACTTCAC < 41bp 0.499892771678439 0.705811078002268 NA NA prediction 0.411622156004535 Functional Gain - TBX19 ENSG00000143178 CDS Human protein_coding chr1:168282044 chr1:168282043 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_32287 0 0 1 0 1 TBX19 chr1:168281946 3'AG 168281946 Downstream 98bp 29643 chr10 88677032 88677032 1 + C T BLCA 88677033 + 88677013 88677053 41 TGAAGAAGCCAGCTGGTTTCGAGAAACAGAAATCTACCAAA TGAAGAAGCCAGCTGGTTTTGAGAAACAGAAATCTACCAAA < 41bp 0.497869261538552 0.705810591533707 NA NA prediction 0.411621183067414 Functional Gain - BMPR1A ENSG00000107779 CDS Human protein_coding chr10:88677033 chr10:88677032 stopgain 0.999 1 20 hm7G_associated_SNPs_32288 3 0 0 0 1 BMPR1A chr10:88677083 5'GT 88677083 Upstream 52bp 29644 chr12 120510471 120510471 1 + C T UCEC 120510472 + 120510452 120510492 41 TGTGCCAGCCGGCAGCTTGCGCACTGCCCTCAATGAGCTCA TGTGCCAGCCGGCAGCTTGTGCACTGCCCTCAATGAGCTCA < 41bp 0.48982332390788 0.705807802646793 NA NA prediction 0.411615605293586 Functional Gain - BICDL1 ENSG00000135127 CDS Human protein_coding chr12:120510472 chr12:120510471 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_32290 0 0 0 0 1 BICDL1 chr12:120510533 5'GT 120510533 Upstream 63bp 29645 chr6 35211482 35211482 1 + G A SKCM 35211483 + 35211463 35211503 41 TCCTGCGACCTTTGCCCTGGGAGTGATGCCCACGGGCCTCT TCCTGCGACCTTTGCCCTGAGAGTGATGCCCACGGGCCTCT < 41bp 0.505314996078943 0.711120035459732 NA NA prediction 0.411610078761578 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35211483 chr6:35211482 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_32292 0 0 0 0 1 SCUBE3 chr6:35211532 5'GT 35211532 Upstream 51bp 29646 chr12 54969383 54969383 1 + C T UCEC 54969384 + 54969364 54969404 41 CTTTTCTCCACTCTGTGACCGCACTTCCACTCTAGTGGCAC CTTTTCTCCACTCTGTGACTGCACTTCCACTCTAGTGGCAC < 41bp 0.545661753529834 0.751463728758638 NA NA prediction 0.411603950457607 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54969384 chr12:54969383 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_32293 0 0 0 0 1 PDE1B chr12:54969416 5'GT 54969416 Upstream 34bp 29647 chr1 55066994 55066994 1 + C T rs188119031 55066995 + 55066975 55067015 41 CCAGGAGGCTGAGACCCACCGGCGCCACATCAACAGTGCCT CCAGGAGGCTGAGACCCACTGGCGCCACATCAACAGTGCCT < 41bp 0.541594142219413 0.747395358380872 NA NA prediction 0.411602432322917 Functional Gain - ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55066995 chr1:55066994 nonsynonymous SNV 0.545 0 20 hm7G_associated_SNPs_32294 0 0 0 0 2 ACOT11 chr1:55066942 3'AG 55066942 Downstream 53bp 29648 chr1 55066994 55066994 1 + C T rs188119031 55066995 + 55066975 55067015 41 CCAGGAGGCTGAGACCCACCGGCGCCACATCAACAGTGCCT CCAGGAGGCTGAGACCCACTGGCGCCACATCAACAGTGCCT < 41bp 0.541594142219413 0.747395358380872 NA NA prediction 0.411602432322917 Functional Gain - ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55066995 chr1:55066994 nonsynonymous SNV 0.545 0 20 hm7G_associated_SNPs_32294 0 0 0 0 2 ACOT11 chr1:55067086 5'GT 55067086 Upstream 93bp 29649 chr17 79425713 79425713 1 + C T COAD 79425714 + 79425694 79425734 41 GGCCATCCTGGGGAAGGGCCGGAAGCTGAGCAAGGTGAAGC GGCCATCCTGGGGAAGGGCTGGAAGCTGAGCAAGGTGAAGC < 41bp 0.513574063519597 0.719374302119822 NA NA prediction 0.411600477200449 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79425714 chr17:79425713 nonsynonymous SNV 0.692 3 20 hm7G_associated_SNPs_32295 0 0 0 0 2 BAHCC1 chr17:79425647 3'AG 79425647 Downstream 67bp 29650 chr17 79425713 79425713 1 + C T COAD 79425714 + 79425694 79425734 41 GGCCATCCTGGGGAAGGGCCGGAAGCTGAGCAAGGTGAAGC GGCCATCCTGGGGAAGGGCTGGAAGCTGAGCAAGGTGAAGC < 41bp 0.513574063519597 0.719374302119822 NA NA prediction 0.411600477200449 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79425714 chr17:79425713 nonsynonymous SNV 0.692 3 20 hm7G_associated_SNPs_32295 0 0 0 0 2 BAHCC1 chr17:79425751 5'GT 79425751 Upstream 39bp 29651 chr20 42204997 42204997 1 + G A BLCA 42204998 + 42204978 42205018 41 CACAAGGACCAGAGGCAGCGGCTGGGCTCCAAAGCAGACTT CACAAGGACCAGAGGCAGCAGCTGGGCTCCAAAGCAGACTT < 41bp 0.51351082129162 0.719308632195316 NA NA prediction 0.411595621807392 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42204998 chr20:42204997 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_32296 0 0 0 0 2 SGK2 chr20:42205019 5'GT 42205019 Upstream 23bp 29652 chr20 42204997 42204997 1 + G A BLCA 42204998 + 42204978 42205018 41 CACAAGGACCAGAGGCAGCGGCTGGGCTCCAAAGCAGACTT CACAAGGACCAGAGGCAGCAGCTGGGCTCCAAAGCAGACTT < 41bp 0.51351082129162 0.719308632195316 NA NA prediction 0.411595621807392 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42204998 chr20:42204997 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_32296 0 0 0 0 2 SGK2 chr20:42205023 5'GT 42205023 Upstream 27bp 29653 chr3 38158718 38158718 1 + G T BLCA 38158719 + 38158699 38158739 41 GTGGAAAGGGAGATTCCAGGGAAGAGGCATCGCCTGCAGGA GTGGAAAGGGAGATTCCAGTGAAGAGGCATCGCCTGCAGGA < 41bp 0.356224920486967 0.705795696302507 NA NA prediction 0.411591392605015 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38158719 chr3:38158718 nonsynonymous SNV 0.244 4 20 hm7G_associated_SNPs_32298 0 0 0 0 3 DLEC1 chr3:38158696 3'AG 38158696 Downstream 23bp 29654 chr3 38158718 38158718 1 + G T BLCA 38158719 + 38158699 38158739 41 GTGGAAAGGGAGATTCCAGGGAAGAGGCATCGCCTGCAGGA GTGGAAAGGGAGATTCCAGTGAAGAGGCATCGCCTGCAGGA < 41bp 0.356224920486967 0.705795696302507 NA NA prediction 0.411591392605015 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38158719 chr3:38158718 nonsynonymous SNV 0.244 4 20 hm7G_associated_SNPs_32298 0 0 0 0 3 DLEC1 chr3:38158699 3'AG 38158699 Downstream 20bp 29655 chr3 38158718 38158718 1 + G T BLCA 38158719 + 38158699 38158739 41 GTGGAAAGGGAGATTCCAGGGAAGAGGCATCGCCTGCAGGA GTGGAAAGGGAGATTCCAGTGAAGAGGCATCGCCTGCAGGA < 41bp 0.356224920486967 0.705795696302507 NA NA prediction 0.411591392605015 Functional Gain - DLEC1 ENSG00000008226 CDS Human protein_coding chr3:38158719 chr3:38158718 nonsynonymous SNV 0.244 4 20 hm7G_associated_SNPs_32298 0 0 0 0 3 DLEC1 chr3:38158793 5'GT 38158793 Upstream 76bp 29656 chr1 183197679 183197679 1 + G A OV 183197680 + 183197660 183197700 41 GTGTATCCACAACACAGCCGGCATCTACTGCGACCAGTGCA GTGTATCCACAACACAGCCAGCATCTACTGCGACCAGTGCA < 41bp 0.505431180229492 0.711225306677992 NA NA prediction 0.411588252897001 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183197680 chr1:183197679 nonsynonymous SNV 0.439 5 20 hm7G_associated_SNPs_32299 0 0 0 0 1 LAMC2 chr1:183197754 5'GT 183197754 Upstream 76bp 29657 chr12 53456938 53456938 1 + C T UCEC 53456939 + 53456919 53456959 41 GGGCCCCCAAGCTGTGGCCCGGGCCAGCTCTGCAGCTCTGA GGGCCCCCAAGCTGTGGCCTGGGCCAGCTCTGCAGCTCTGA < 41bp 0.505449000212883 0.711242494701325 NA NA prediction 0.411586988976885 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53456939 chr12:53456938 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_32300 0 0 0 0 2 TNS2 chr12:53456873 3'AG 53456873 Downstream 66bp 29658 chr12 53456938 53456938 1 + C T UCEC 53456939 + 53456919 53456959 41 GGGCCCCCAAGCTGTGGCCCGGGCCAGCTCTGCAGCTCTGA GGGCCCCCAAGCTGTGGCCTGGGCCAGCTCTGCAGCTCTGA < 41bp 0.505449000212883 0.711242494701325 NA NA prediction 0.411586988976885 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53456939 chr12:53456938 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_32300 0 0 0 0 2 TNS2 chr12:53456909 3'AG 53456909 Downstream 30bp 29659 chrX 100085829 100085829 1 + G A UCEC 100085830 + 100085810 100085850 41 CTCGCCCGTGGGACCCGCCGGGCCTGCATCAATTGAGCGAG CTCGCCCGTGGGACCCGCCAGGCCTGCATCAATTGAGCGAG < 41bp 0.541758412239864 0.747549984187978 NA NA prediction 0.411583143896229 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100085830 chrX:100085829 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_32302 0 0 1 0 2 CSTF2 chrX:100085797 3'AG 100085797 Downstream 33bp 29660 chrX 100085829 100085829 1 + G A UCEC 100085830 + 100085810 100085850 41 CTCGCCCGTGGGACCCGCCGGGCCTGCATCAATTGAGCGAG CTCGCCCGTGGGACCCGCCAGGCCTGCATCAATTGAGCGAG < 41bp 0.541758412239864 0.747549984187978 NA NA prediction 0.411583143896229 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100085830 chrX:100085829 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_32302 0 0 1 0 2 CSTF2 chrX:100085856 5'GT 100085856 Upstream 28bp 29661 chr6 35260380 35260380 1 + C T COAD 35260381 + 35260361 35260401 41 GCTGCGGGAAACGCTTCACCGAGTACTCGAGCTTGTATAAG GCTGCGGGAAACGCTTCACTGAGTACTCGAGCTTGTATAAG < 41bp 0.499895006223369 0.70579142405719 NA NA prediction 0.411582848114381 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35260381 chr6:35260380 synonymous SNV . 0 20 hm7G_associated_SNPs_32303 0 0 1 0 1 ZNF76 chr6:35260331 3'AG 35260331 Downstream 50bp 29662 chr9 32418353 32418353 1 + C T rs41305321 32418354 + 32418334 32418374 41 CCAGGCTTTTCACAACATGCGGATTATTCCCCCTGGCTCAG CCAGGCTTTTCACAACATGTGGATTATTCCCCCTGGCTCAG < 41bp 0.523000581471491 0.728790501028449 NA NA prediction 0.411579839113917 Functional Gain - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32418354 chr9:32418353 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_32304 0 0 0 0 1 ACO1 chr9:32418326 3'AG 32418326 Downstream 28bp 29663 chr22 21350083 21350083 1 + C T COAD 21350084 + 21350064 21350104 41 TACCTGGAGGGAGCGGGCGCGGAATTCTGTGACATCACTCT TACCTGGAGGGAGCGGGCGTGGAATTCTGTGACATCACTCT < 41bp 0.49771389845218 0.705788738789982 NA NA prediction 0.411577477579963 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21350084 chr22:21350083 nonsynonymous SNV 0.253 0 20 hm7G_associated_SNPs_32305 0 0 1 0 2 LZTR1 chr22:21350035 3'AG 21350035 Downstream 49bp 29664 chr22 21350083 21350083 1 + C T COAD 21350084 + 21350064 21350104 41 TACCTGGAGGGAGCGGGCGCGGAATTCTGTGACATCACTCT TACCTGGAGGGAGCGGGCGTGGAATTCTGTGACATCACTCT < 41bp 0.49771389845218 0.705788738789982 NA NA prediction 0.411577477579963 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21350084 chr22:21350083 nonsynonymous SNV 0.253 0 20 hm7G_associated_SNPs_32305 0 0 1 0 2 LZTR1 chr22:21350161 5'GT 21350161 Upstream 79bp 29665 chr3 11070970 11070970 1 + C T STAD 11070971 + 11070951 11070991 41 CCCCAGGCTCCTCCGCAACCGCAGAGAGCTCTTCATTGCTG CCCCAGGCTCCTCCGCAACTGCAGAGAGCTCTTCATTGCTG < 41bp 0.535747018781229 0.741535590995572 NA NA prediction 0.411577144428687 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11070971 chr3:11070970 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_32306 0 0 0 0 2 SLC6A1 chr3:11070907 3'AG 11070907 Downstream 64bp 29666 chr3 11070970 11070970 1 + C T STAD 11070971 + 11070951 11070991 41 CCCCAGGCTCCTCCGCAACCGCAGAGAGCTCTTCATTGCTG CCCCAGGCTCCTCCGCAACTGCAGAGAGCTCTTCATTGCTG < 41bp 0.535747018781229 0.741535590995572 NA NA prediction 0.411577144428687 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11070971 chr3:11070970 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_32306 0 0 0 0 2 SLC6A1 chr3:11071038 5'GT 11071038 Upstream 69bp 29667 chr9 130868127 130868127 1 + C T UCEC 130868128 + 130868108 130868148 41 ACGTCCTCAAAATTGCCCCCGAATCAGCCATCAAATTCATG ACGTCCTCAAAATTGCCCCTGAATCAGCCATCAAATTCATG < 41bp 0.546967609339744 0.752755074276969 NA NA prediction 0.411574929874449 Functional Gain - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130868128 chr9:130868127 synonymous SNV . 0 20 hm7G_associated_SNPs_32307 0 0 1 0 1 SLC25A25 chr9:130868160 5'GT 130868160 Upstream 34bp 29668 chr10 5777270 5777270 1 + C T LUAD 5777271 + 5777251 5777291 41 GTCTTTTCTACATAAGGTGCGGAAGTGCTGACTGCACAGTT GTCTTTTCTACATAAGGTGTGGAAGTGCTGACTGCACAGTT < 41bp 0.50894960795224 0.714736894599439 NA NA prediction 0.411574573294398 Functional Gain - FAM208B ENSG00000108021 CDS Human protein_coding chr10:5777271 chr10:5777270 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_32308 0 0 0 0 1 FAM208B chr10:5777267 3'AG 5777267 Downstream 4bp 29669 chr21 33340661 33340661 1 + C T STAD 33340662 + 33340642 33340682 41 TGGCTTAATGAGAATTACACGGGCAAAGTGCCCTGTAATGT TGGCTTAATGAGAATTACATGGGCAAAGTGCCCTGTAATGT < 41bp 0.490763002536464 0.705787114841648 NA NA prediction 0.411574229683295 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33340662 chr21:33340661 nonsynonymous SNV 0.920 0 20 hm7G_associated_SNPs_32309 0 0 0 0 2 HUNK chr21:33340562 3'AG 33340562 Downstream 100bp 29670 chr21 33340661 33340661 1 + C T STAD 33340662 + 33340642 33340682 41 TGGCTTAATGAGAATTACACGGGCAAAGTGCCCTGTAATGT TGGCTTAATGAGAATTACATGGGCAAAGTGCCCTGTAATGT < 41bp 0.490763002536464 0.705787114841648 NA NA prediction 0.411574229683295 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33340662 chr21:33340661 nonsynonymous SNV 0.920 0 20 hm7G_associated_SNPs_32309 0 0 0 0 2 HUNK chr21:33340697 5'GT 33340697 Upstream 37bp 29671 chr15 66777515 66777515 1 + G T LUSC 66777516 + 66777496 66777536 41 CCCAGGCCAAGGACCCCCGGGAGGCCCCTTAGCTGTGAGTA CCCAGGCCAAGGACCCCCGTGAGGCCCCTTAGCTGTGAGTA < 41bp 0.348607774488191 0.705786773914864 NA NA prediction 0.411573547829729 Functional Gain - MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66777516 chr15:66777515 nonsynonymous SNV 0.888 2 20 hm7G_associated_SNPs_32310 0 0 1 0 1 MAP2K1 chr15:66777529 5'GT 66777529 Upstream 15bp 29672 chr17 7750430 7750430 1 + G A STAD 7750431 + 7750411 7750451 41 TATCTCCTATAGGAGCAGCGGCACTCGCTGCCTCACCCATA TATCTCCTATAGGAGCAGCAGCACTCGCTGCCTCACCCATA < 41bp 0.491994570939757 0.705786331539201 NA NA prediction 0.411572663078402 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750431 chr17:7750430 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_32311 0 0 1 0 1 KDM6B chr17:7750423 3'AG 7750423 Downstream 8bp 29673 chr1 3383841 3383841 1 + C T UCEC 3383842 + 3383822 3383862 41 AGGGAACCCAGAAGGTGGACGCCACCATTGTGGTCAAGAGC AGGGAACCCAGAAGGTGGATGCCACCATTGTGGTCAAGAGC < 41bp 0.513650582093797 0.71943455882841 NA NA prediction 0.411567953469228 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3383842 chr1:3383841 synonymous SNV . 0 20 hm7G_associated_SNPs_32313 0 0 1 0 1 ARHGEF16 chr1:3383901 5'GT 3383901 Upstream 61bp 29674 chr16 50815179 50815179 1 + C T GBM 50815180 + 50815160 50815200 41 GATGAGTGTGCAGGCTGTACGGATGGAACCTTCAGAGGCAC GATGAGTGTGCAGGCTGTATGGATGGAACCTTCAGAGGCAC < 41bp 0.517860950298506 0.723643155478364 NA NA prediction 0.411564410359716 Functional Gain - CYLD ENSG00000083799 CDS Human protein_coding chr16:50815180 chr16:50815179 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_32315 0 0 1 0 1 CYLD chr16:50815157 3'AG 50815157 Downstream 23bp 29675 chr17 9596508 9596508 1 + C T UCEC 9596509 + 9596489 9596529 41 GCCTGCAGCTATTTGTCTCCGAAGGACAGTCGGCCCCTCTG GCCTGCAGCTATTTGTCTCTGAAGGACAGTCGGCCCCTCTG < 41bp 0.524095803615562 0.729877082381689 NA NA prediction 0.411562557532256 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9596509 chr17:9596508 nonsynonymous SNV 0.037 3 20 hm7G_associated_SNPs_32317 0 0 0 0 2 USP43 chr17:9596444 3'AG 9596444 Downstream 65bp 29676 chr17 9596508 9596508 1 + C T UCEC 9596509 + 9596489 9596529 41 GCCTGCAGCTATTTGTCTCCGAAGGACAGTCGGCCCCTCTG GCCTGCAGCTATTTGTCTCTGAAGGACAGTCGGCCCCTCTG < 41bp 0.524095803615562 0.729877082381689 NA NA prediction 0.411562557532256 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9596509 chr17:9596508 nonsynonymous SNV 0.037 3 20 hm7G_associated_SNPs_32317 0 0 0 0 2 USP43 chr17:9596547 5'GT 9596547 Upstream 40bp 29677 chr9 135932181 135932181 1 + G A STAD 135932182 + 135932162 135932202 41 GATCATTCACCGCAATGACGGGGCAGAGAATTCCTGCACAG GATCATTCACCGCAATGACAGGGCAGAGAATTCCTGCACAG < 41bp 0.524190303411472 0.729970581458502 NA NA prediction 0.411560556094061 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135932182 chr9:135932181 nonsynonymous SNV 0.262 3 20 hm7G_associated_SNPs_32318 0 0 1 0 1 GTF3C5 chr9:135932153 3'AG 135932153 Downstream 29bp 29678 chr1 2416034 2416034 1 + C T UCEC 2416035 + 2416015 2416055 41 GGATGCCGCCAGCCTGCAGCGCTTCCTGCAGGTGGAGCAGA GGATGCCGCCAGCCTGCAGTGCTTCCTGCAGGTGGAGCAGA < 41bp 0.512532050795794 0.718311058739244 NA NA prediction 0.411558015886901 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2416035 chr1:2416034 nonsynonymous SNV 0.391 2 20 hm7G_associated_SNPs_32320 0 0 0 0 1 PLCH2 chr1:2416057 5'GT 2416057 Upstream 24bp 29679 chr19 46815779 46815779 1 + G A BRCA 46815780 + 46815760 46815800 41 CAGTGCTGAGCAAGGGCCAGGCAGTAACAGGGCAGTATCGC CAGTGCTGAGCAAGGGCCAAGCAGTAACAGGGCAGTATCGC < 41bp 0.555713020843797 0.761491343643303 NA NA prediction 0.411556645599012 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46815780 chr19:46815779 synonymous SNV . 0 20 hm7G_associated_SNPs_32321 0 0 1 4 1 HIF3A chr19:46815763 3'AG 46815763 Downstream 17bp 29680 chr20 2381043 2381043 1 + G A SKCM 2381044 + 2381024 2381064 41 TGAGTGTGGACAAATACGTGGACTCCTTCGGGCGGACCCTG TGAGTGTGGACAAATACGTAGACTCCTTCGGGCGGACCCTG < 41bp 0.5237104416966 0.729483380501414 NA NA prediction 0.411545877609627 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2381044 chr20:2381043 synonymous SNV . 0 20 hm7G_associated_SNPs_32325 0 0 0 0 2 TGM6 chr20:2380952 3'AG 2380952 Downstream 92bp 29681 chr20 2381043 2381043 1 + G A SKCM 2381044 + 2381024 2381064 41 TGAGTGTGGACAAATACGTGGACTCCTTCGGGCGGACCCTG TGAGTGTGGACAAATACGTAGACTCCTTCGGGCGGACCCTG < 41bp 0.5237104416966 0.729483380501414 NA NA prediction 0.411545877609627 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2381044 chr20:2381043 synonymous SNV . 0 20 hm7G_associated_SNPs_32325 0 0 0 0 2 TGM6 chr20:2381090 5'GT 2381090 Upstream 48bp 29682 chr14 65198166 65198166 1 + C T BLCA 65198167 + 65198147 65198187 41 GGGCACATTCCGCGTGCATCGCGTGCGCAATGAAAGGACCT GGGCACATTCCGCGTGCATTGCGTGCGCAATGAAAGGACCT < 41bp 0.492842837946064 0.705771854952942 NA NA prediction 0.411543709905885 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65198167 chr14:65198166 nonsynonymous SNV 0.934 5 20 hm7G_associated_SNPs_32326 0 0 0 0 2 PLEKHG3 chr14:65198079 3'AG 65198079 Downstream 88bp 29683 chr14 65198166 65198166 1 + C T BLCA 65198167 + 65198147 65198187 41 GGGCACATTCCGCGTGCATCGCGTGCGCAATGAAAGGACCT GGGCACATTCCGCGTGCATTGCGTGCGCAATGAAAGGACCT < 41bp 0.492842837946064 0.705771854952942 NA NA prediction 0.411543709905885 Functional Gain - PLEKHG3 ENSG00000126822 CDS Human protein_coding chr14:65198167 chr14:65198166 nonsynonymous SNV 0.934 5 20 hm7G_associated_SNPs_32326 0 0 0 0 2 PLEKHG3 chr14:65198261 5'GT 65198261 Upstream 96bp 29684 chr15 59373180 59373180 1 + C T GBM 59373181 + 59373161 59373201 41 CATCAAGCTTCTGCCTGCCCGCATTCTCATGGAAACCCCCC CATCAAGCTTCTGCCTGCCTGCATTCTCATGGAAACCCCCC < 41bp 0.518277200296061 0.724048910457894 NA NA prediction 0.411543420323666 Functional Gain - RNF111 ENSG00000157450 CDS Human protein_coding chr15:59373181 chr15:59373180 nonsynonymous SNV 0.862 3 20 hm7G_associated_SNPs_32327 0 0 0 0 1 RNF111 chr15:59373135 3'AG 59373135 Downstream 46bp 29685 chr10 122334682 122334682 1 + C T SKCM 122334683 + 122334663 122334703 41 TTCACGACGTTCTACTTGGCGGGCAAGCTGCACTGCTTCAC TTCACGACGTTCTACTTGGTGGGCAAGCTGCACTGCTTCAC < 41bp 0.517261836198191 0.723031286424465 NA NA prediction 0.411538900452548 Functional Gain - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334683 chr10:122334682 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32328 0 0 0 0 1 PLPP4 chr10:122334643 3'AG 122334643 Downstream 40bp 29686 chr15 101597169 101597169 1 + C T UCEC 101597170 + 101597150 101597190 41 GAAGCTGTCCAAGGGCATCCGCCCGGTTCTGGGGCAGCCGG GAAGCTGTCCAAGGGCATCTGCCCGGTTCTGGGGCAGCCGG < 41bp 0.490782159968936 0.705768114289225 NA NA prediction 0.411536228578449 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101597170 chr15:101597169 nonsynonymous SNV 0.851 4 20 hm7G_associated_SNPs_32329 0 0 0 0 1 LRRK1 chr15:101597255 5'GT 101597255 Upstream 87bp 29687 chr1 186270782 186270782 1 + C T LUSC 186270783 + 186270763 186270803 41 GAGGGAGGGAGTGTGACTGCGACGCCCAATGTAAGAAGTAT GAGGGAGGGAGTGTGACTGTGACGCCCAATGTAAGAAGTAT < 41bp 0.5378518904015 0.743615684106731 NA NA prediction 0.411527587410461 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186270783 chr1:186270782 synonymous SNV . 0 20 hm7G_associated_SNPs_32331 0 0 0 0 2 PRG4 chr1:186270724 3'AG 186270724 Downstream 59bp 29688 chr1 186270782 186270782 1 + C T LUSC 186270783 + 186270763 186270803 41 GAGGGAGGGAGTGTGACTGCGACGCCCAATGTAAGAAGTAT GAGGGAGGGAGTGTGACTGTGACGCCCAATGTAAGAAGTAT < 41bp 0.5378518904015 0.743615684106731 NA NA prediction 0.411527587410461 Functional Gain - PRG4 ENSG00000116690 CDS Human protein_coding chr1:186270783 chr1:186270782 synonymous SNV . 0 20 hm7G_associated_SNPs_32331 0 0 0 0 2 PRG4 chr1:186270843 5'GT 186270843 Upstream 62bp 29689 chr4 123868469 123868469 1 + C T UCEC 123868470 + 123868450 123868490 41 TGCTCTCCGAAGACCTGGGCGATTTGATAAAGAGATTGAGA TGCTCTCCGAAGACCTGGGTGATTTGATAAAGAGATTGAGA < 41bp 0.494519940808403 0.705763590366935 NA NA prediction 0.411527180733869 Functional Gain - SPATA5 ENSG00000145375 CDS Human protein_coding chr4:123868470 chr4:123868469 stopgain 0.976 1 20 hm7G_associated_SNPs_32332 0 0 1 0 1 SPATA5 chr4:123868388 3'AG 123868388 Downstream 82bp 29690 chr2 119735466 119735466 1 + G A SKCM 119735467 + 119735447 119735487 41 GGGTCTCATTGGCCCAAAAGGGGAAACTGGAACTAAGGGAG GGGTCTCATTGGCCCAAAAAGGGAAACTGGAACTAAGGGAG < 41bp 0.488545485056795 0.705762259034212 NA NA prediction 0.411524518068423 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735467 chr2:119735466 nonsynonymous SNV 0.324 5 20 hm7G_associated_SNPs_32333 0 0 0 0 2 MARCO chr2:119735404 3'AG 119735404 Downstream 63bp 29691 chr2 119735466 119735466 1 + G A SKCM 119735467 + 119735447 119735487 41 GGGTCTCATTGGCCCAAAAGGGGAAACTGGAACTAAGGGAG GGGTCTCATTGGCCCAAAAAGGGAAACTGGAACTAAGGGAG < 41bp 0.488545485056795 0.705762259034212 NA NA prediction 0.411524518068423 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119735467 chr2:119735466 nonsynonymous SNV 0.324 5 20 hm7G_associated_SNPs_32333 0 0 0 0 2 MARCO chr2:119735511 5'GT 119735511 Upstream 46bp 29692 chr19 19446942 19446942 1 + C T UCEC 19446943 + 19446923 19446963 41 GTCACTAGATCCCGCAGTTCGAAGATGTTAAATTTGAAGCA GTCACTAGATCCCGCAGTTTGAAGATGTTAAATTTGAAGCA < 41bp 0.52154778541455 0.727308651078556 NA NA prediction 0.411521731328011 Functional Gain - MAU2 ENSG00000129933 CDS Human protein_coding chr19:19446943 chr19:19446942 synonymous SNV . 0 20 hm7G_associated_SNPs_32335 0 0 1 0 2 MAU2 chr19:19446931 3'AG 19446931 Downstream 12bp 29693 chr19 19446942 19446942 1 + C T UCEC 19446943 + 19446923 19446963 41 GTCACTAGATCCCGCAGTTCGAAGATGTTAAATTTGAAGCA GTCACTAGATCCCGCAGTTTGAAGATGTTAAATTTGAAGCA < 41bp 0.52154778541455 0.727308651078556 NA NA prediction 0.411521731328011 Functional Gain - MAU2 ENSG00000129933 CDS Human protein_coding chr19:19446943 chr19:19446942 synonymous SNV . 0 20 hm7G_associated_SNPs_32335 0 0 1 0 2 MAU2 chr19:19446996 5'GT 19446996 Upstream 55bp 29694 chr9 35660415 35660415 1 + G A UCEC 35660416 + 35660396 35660436 41 AGGGGAAAGATGAAACTGCGGTTCTCCACGAGGAGGCAAGC AGGGGAAAGATGAAACTGCAGTTCTCCACGAGGAGGCAAGC < 41bp 0.515816059653898 0.721576260243568 NA NA prediction 0.411520401179341 Functional Gain - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660416 chr9:35660415 synonymous SNV . 0 20 hm7G_associated_SNPs_32336 0 0 0 0 2 CCDC107 chr9:35660398 3'AG 35660398 Downstream 18bp 29695 chr9 35660415 35660415 1 + G A UCEC 35660416 + 35660396 35660436 41 AGGGGAAAGATGAAACTGCGGTTCTCCACGAGGAGGCAAGC AGGGGAAAGATGAAACTGCAGTTCTCCACGAGGAGGCAAGC < 41bp 0.515816059653898 0.721576260243568 NA NA prediction 0.411520401179341 Functional Gain - CCDC107 ENSG00000159884 CDS Human protein_coding chr9:35660416 chr9:35660415 synonymous SNV . 0 20 hm7G_associated_SNPs_32336 0 0 0 0 2 CCDC107 chr9:35660458 5'GT 35660458 Upstream 44bp 29696 chr19 49971709 49971709 1 + C T BLCA 49971710 + 49971690 49971730 41 TGGCTGTGGTGTGTCCGGACGAGTGGCCCCTGCTTGCCTTC TGGCTGTGGTGTGTCCGGATGAGTGGCCCCTGCTTGCCTTC < 41bp 0.497473528837088 0.705759673241443 NA NA prediction 0.411519346482887 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49971710 chr19:49971709 synonymous SNV . 0 20 hm7G_associated_SNPs_32337 0 0 1 0 1 ALDH16A1 chr19:49971638 3'AG 49971638 Downstream 72bp 29697 chr13 61059975 61059975 1 + C T UCEC 61059976 + 61059956 61059996 41 GGATAGCAGAGAACTTGATCGAAGAAAAACATTGCAAGTTA GGATAGCAGAGAACTTGATTGAAGAAAAACATTGCAAGTTA < 41bp 0.499375957562744 0.705759255999202 NA NA prediction 0.411518511998404 Functional Gain - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61059976 chr13:61059975 stopgain 1.000 0 20 hm7G_associated_SNPs_32338 0 0 1 0 2 TDRD3 chr13:61059933 3'AG 61059933 Downstream 43bp 29698 chr13 61059975 61059975 1 + C T UCEC 61059976 + 61059956 61059996 41 GGATAGCAGAGAACTTGATCGAAGAAAAACATTGCAAGTTA GGATAGCAGAGAACTTGATTGAAGAAAAACATTGCAAGTTA < 41bp 0.499375957562744 0.705759255999202 NA NA prediction 0.411518511998404 Functional Gain - TDRD3 ENSG00000083544 CDS Human protein_coding chr13:61059976 chr13:61059975 stopgain 1.000 0 20 hm7G_associated_SNPs_32338 0 0 1 0 2 TDRD3 chr13:61059936 3'AG 61059936 Downstream 40bp 29699 chr7 2566810 2566810 1 + G A UCEC 2566811 + 2566791 2566831 41 TCCACTGCCACCTGTACCCGGACACACCCTGGTGTCCCCGC TCCACTGCCACCTGTACCCAGACACACCCTGGTGTCCCCGC < 41bp 0.525762301409176 0.731521096454962 NA NA prediction 0.411517590091573 Functional Gain - LFNG ENSG00000106003 CDS Human protein_coding chr7:2566811 chr7:2566810 synonymous SNV . 0 20 hm7G_associated_SNPs_32340 0 0 1 0 1 LFNG chr7:2566780 3'AG 2566780 Downstream 31bp 29700 chr11 46321656 46321656 1 + C T GBM 46321657 + 46321637 46321677 41 AGCACAGCTACTCCCTGAGCGGCGACTCAGCGCCCCAGAGC AGCACAGCTACTCCCTGAGTGGCGACTCAGCGCCCCAGAGC < 41bp 0.507333726959615 0.713089564453082 NA NA prediction 0.411511674986934 Functional Gain - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46321657 chr11:46321656 synonymous SNV . 0 20 hm7G_associated_SNPs_32342 0 0 0 0 1 CREB3L1 chr11:46321714 5'GT 46321714 Upstream 59bp 29701 chr14 90734664 90734664 1 + G T COAD 90734665 + 90734645 90734685 41 CAGAAGTACCTAGGTGATGGGCCCAAACTCGTACGGGAATT CAGAAGTACCTAGGTGATGTGCCCAAACTCGTACGGGAATT < 41bp 0.699645703698572 0.905399249200762 NA NA prediction 0.411507091004382 Functional Gain - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90734665 chr14:90734664 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_32343 0 0 0 0 2 PSMC1 chr14:90734568 3'AG 90734568 Downstream 97bp 29702 chr14 90734664 90734664 1 + G T COAD 90734665 + 90734645 90734685 41 CAGAAGTACCTAGGTGATGGGCCCAAACTCGTACGGGAATT CAGAAGTACCTAGGTGATGTGCCCAAACTCGTACGGGAATT < 41bp 0.699645703698572 0.905399249200762 NA NA prediction 0.411507091004382 Functional Gain - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90734665 chr14:90734664 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_32343 0 0 0 0 2 PSMC1 chr14:90734757 5'GT 90734757 Upstream 94bp 29703 chr9 139878137 139878137 1 + G T LIHC 139878138 + 139878118 139878158 41 CCTTGGGGAATGGTGACCTGGCCCTCAAGTTTGGATACCCC CCTTGGGGAATGGTGACCTTGCCCTCAAGTTTGGATACCCC < 41bp 0.375378880563585 0.70575265071363 NA NA prediction 0.411505301427259 Functional Gain - LCNL1 ENSG00000214402 CDS Human protein_coding chr9:139878138 chr9:139878137 synonymous SNV . 0 20 hm7G_associated_SNPs_32344 0 0 0 0 1 LCNL1 chr9:139878160 5'GT 139878160 Upstream 24bp 29704 chr11 64329845 64329845 1 + G T LUAD 64329846 + 64329826 64329866 41 GCCTGGCCTTTGCCCTGCGGGACTGGAGGACTCTCCAGCTG GCCTGGCCTTTGCCCTGCGTGACTGGAGGACTCTCCAGCTG < 41bp 0.355477288936448 0.705751161525017 NA NA prediction 0.411502323050034 Functional Gain - SLC22A11 ENSG00000168065 CDS Human protein_coding chr11:64329846 chr11:64329845 synonymous SNV . 0 20 hm7G_associated_SNPs_32345 0 0 0 0 1 SLC22A11 chr11:64329907 5'GT 64329907 Upstream 63bp 29705 chr3 46939361 46939361 1 + G A SKCM 46939362 + 46939342 46939382 41 CAGGGCGCCCCTGTCTGCCGGAATGGGACCACATCCTGTGC CAGGGCGCCCCTGTCTGCCAGAATGGGACCACATCCTGTGC < 41bp 0.558907930849325 0.764658055934495 NA NA prediction 0.411500250170341 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939362 chr3:46939361 synonymous SNV . 0 20 hm7G_associated_SNPs_32347 0 0 0 0 2 PTH1R chr3:46939345 3'AG 46939345 Downstream 17bp 29706 chr3 46939361 46939361 1 + G A SKCM 46939362 + 46939342 46939382 41 CAGGGCGCCCCTGTCTGCCGGAATGGGACCACATCCTGTGC CAGGGCGCCCCTGTCTGCCAGAATGGGACCACATCCTGTGC < 41bp 0.558907930849325 0.764658055934495 NA NA prediction 0.411500250170341 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46939362 chr3:46939361 synonymous SNV . 0 20 hm7G_associated_SNPs_32347 0 0 0 0 2 PTH1R chr3:46939455 5'GT 46939455 Upstream 95bp 29707 chr1 160105259 160105259 1 + C T COAD 160105260 + 160105240 160105280 41 TGACGGGTGACGGGGTGAACGACTCCCCTGCATTGAAGAAG TGACGGGTGACGGGGTGAATGACTCCCCTGCATTGAAGAAG < 41bp 0.489244938576803 0.705750108522923 NA NA prediction 0.411500217045846 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160105260 chr1:160105259 synonymous SNV . 0 20 hm7G_associated_SNPs_32348 0 0 0 0 1 ATP1A2 chr1:160105224 3'AG 160105224 Downstream 36bp 29708 chr2 32361981 32361981 1 + G T LUAD 32361982 + 32361962 32362002 41 TTTGTGTGAAAGAAGAGAAGGGGAGCACGATGCTAGTAGAC TTTGTGTGAAAGAAGAGAATGGGAGCACGATGCTAGTAGAC < 41bp 0.69625037256394 0.9019969584535 NA NA prediction 0.41149317177912 Functional Gain - SPAST ENSG00000021574 CDS Human protein_coding chr2:32361982 chr2:32361981 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_32350 0 0 0 0 2 SPAST chr2:32361946 3'AG 32361946 Downstream 36bp 29709 chr2 32361981 32361981 1 + G T LUAD 32361982 + 32361962 32362002 41 TTTGTGTGAAAGAAGAGAAGGGGAGCACGATGCTAGTAGAC TTTGTGTGAAAGAAGAGAATGGGAGCACGATGCTAGTAGAC < 41bp 0.69625037256394 0.9019969584535 NA NA prediction 0.41149317177912 Functional Gain - SPAST ENSG00000021574 CDS Human protein_coding chr2:32361982 chr2:32361981 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_32350 0 0 0 0 2 SPAST chr2:32362037 5'GT 32362037 Upstream 57bp 29710 chr4 74735639 74735639 1 + G A HNSC 74735640 + 74735620 74735660 41 CAGAGCCACACTCAAGAATGGGCGGAAAGCTTGCCTCAATC CAGAGCCACACTCAAGAATAGGCGGAAAGCTTGCCTCAATC < 41bp 0.541767939508598 0.747512460466665 NA NA prediction 0.411489041916134 Functional Gain - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735640 chr4:74735639 nonsynonymous SNV 0.013 4 20 hm7G_associated_SNPs_32353 0 0 0 0 2 CXCL1 chr4:74735623 3'AG 74735623 Downstream 17bp 29711 chr4 74735639 74735639 1 + G A HNSC 74735640 + 74735620 74735660 41 CAGAGCCACACTCAAGAATGGGCGGAAAGCTTGCCTCAATC CAGAGCCACACTCAAGAATAGGCGGAAAGCTTGCCTCAATC < 41bp 0.541767939508598 0.747512460466665 NA NA prediction 0.411489041916134 Functional Gain - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735640 chr4:74735639 nonsynonymous SNV 0.013 4 20 hm7G_associated_SNPs_32353 0 0 0 0 2 CXCL1 chr4:74735706 5'GT 74735706 Upstream 68bp 29712 chr3 423918 423918 1 + C T COAD 423919 + 423899 423939 41 AAGACAGAACAGGAGTGTTCGGCTGACCTGGGAAGCTGGAG AAGACAGAACAGGAGTGTTTGGCTGACCTGGGAAGCTGGAG < 41bp 0.508805513936163 0.714549084664661 NA NA prediction 0.411487141456997 Functional Gain - CHL1 ENSG00000134121 CDS Human protein_coding chr3:423919 chr3:423918 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32354 0 0 0 0 2 CHL1 chr3:423862 3'AG 423862 Downstream 57bp 29713 chr3 423918 423918 1 + C T COAD 423919 + 423899 423939 41 AAGACAGAACAGGAGTGTTCGGCTGACCTGGGAAGCTGGAG AAGACAGAACAGGAGTGTTTGGCTGACCTGGGAAGCTGGAG < 41bp 0.508805513936163 0.714549084664661 NA NA prediction 0.411487141456997 Functional Gain - CHL1 ENSG00000134121 CDS Human protein_coding chr3:423919 chr3:423918 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32354 0 0 0 0 2 CHL1 chr3:423963 5'GT 423963 Upstream 46bp 29714 chr1 156554734 156554734 1 + G A SKCM 156554735 + 156554715 156554755 41 CGGAGGGGACCCCAGCAAAGGCAGGAAGCAGCACAGCAGGT CGGAGGGGACCCCAGCAAAAGCAGGAAGCAGCACAGCAGGT < 41bp 0.56363829118942 0.769381159793665 NA NA prediction 0.41148573720849 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156554735 chr1:156554734 synonymous SNV . 0 20 hm7G_associated_SNPs_32356 0 0 0 0 2 TTC24 chr1:156554669 3'AG 156554669 Downstream 66bp 29715 chr1 156554734 156554734 1 + G A SKCM 156554735 + 156554715 156554755 41 CGGAGGGGACCCCAGCAAAGGCAGGAAGCAGCACAGCAGGT CGGAGGGGACCCCAGCAAAAGCAGGAAGCAGCACAGCAGGT < 41bp 0.56363829118942 0.769381159793665 NA NA prediction 0.41148573720849 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156554735 chr1:156554734 synonymous SNV . 0 20 hm7G_associated_SNPs_32356 0 0 0 0 2 TTC24 chr1:156554766 5'GT 156554766 Upstream 33bp 29716 chr11 46747681 46747681 1 + G A PRAD 46747682 + 46747662 46747702 41 CGTGTGGTGCTATGTGGCCGGGAAGCCTGGCGACTTTGGGT CGTGTGGTGCTATGTGGCCAGGAAGCCTGGCGACTTTGGGT < 41bp 0.564635518628124 0.770375569868862 NA NA prediction 0.411480102481476 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46747682 chr11:46747681 nonsynonymous SNV 0.010 1 20 hm7G_associated_SNPs_32358 0 0 1 0 1 F2 chr11:46747723 5'GT 46747723 Upstream 43bp 29717 chr7 141758057 141758057 1 + C T COAD 141758058 + 141758038 141758078 41 TTTGGGGTTCCAGCTGTGTCGCTATGGCTACCAGAATGACT TTTGGGGTTCCAGCTGTGTTGCTATGGCTACCAGAATGACT < 41bp 0.525052136569131 0.73079183079602 NA NA prediction 0.411479388453777 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141758058 chr7:141758057 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_32359 0 0 0 0 2 MGAM chr7:141758003 3'AG 141758003 Downstream 55bp 29718 chr7 141758057 141758057 1 + C T COAD 141758058 + 141758038 141758078 41 TTTGGGGTTCCAGCTGTGTCGCTATGGCTACCAGAATGACT TTTGGGGTTCCAGCTGTGTTGCTATGGCTACCAGAATGACT < 41bp 0.525052136569131 0.73079183079602 NA NA prediction 0.411479388453777 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141758058 chr7:141758057 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_32359 0 0 0 0 2 MGAM chr7:141758128 5'GT 141758128 Upstream 72bp 29719 chr11 64064727 64064727 1 + C T STAD 64064728 + 64064708 64064748 41 CCTCCCTGCGCCATGGCATCGGTCACATTGAAGCCATCTTC CCTCCCTGCGCCATGGCATTGGTCACATTGAAGCCATCTTC < 41bp 0.506933137186405 0.712672372093838 NA NA prediction 0.411478469814866 Functional Gain - KCNK4 ENSG00000182450 CDS Human protein_coding chr11:64064728 chr11:64064727 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_32360 0 0 0 0 1 KCNK4 chr11:64064751 5'GT 64064751 Upstream 25bp 29720 chr5 176305289 176305289 1 + G A SKCM 176305290 + 176305270 176305310 41 TGGGGGGACAGCTGATCCAGGAGCCACGGGTCCTGCACTTC TGGGGGGACAGCTGATCCAAGAGCCACGGGTCCTGCACTTC < 41bp 0.55316322626227 0.758898219060654 NA NA prediction 0.411469985596768 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176305290 chr5:176305289 synonymous SNV . 0 20 hm7G_associated_SNPs_32361 0 0 1 0 1 UNC5A chr5:176305245 3'AG 176305245 Downstream 45bp 29721 chr3 112998818 112998818 1 + C T LGG 112998819 + 112998799 112998839 41 TATATCACCTTCACGGATGCGGTCAATGAGACCACCATCAT TATATCACCTTCACGGATGTGGTCAATGAGACCACCATCAT < 41bp 0.536364201764452 0.742094848402494 NA NA prediction 0.411461293276084 Functional Gain - BOC ENSG00000144857 CDS Human protein_coding chr3:112998819 chr3:112998818 nonsynonymous SNV 0.569 4 20 hm7G_associated_SNPs_32364 0 0 0 0 1 BOC chr3:112998852 5'GT 112998852 Upstream 35bp 29722 chr1 170955788 170955788 1 + C T COAD 170955789 + 170955769 170955809 41 CTTCACCTGATGATAAAATCGCATCTGATGCAGCATCCATA CTTCACCTGATGATAAAATTGCATCTGATGCAGCATCCATA < 41bp 0.520329566643047 0.726059712022667 NA NA prediction 0.41146029075924 Functional Gain - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170955789 chr1:170955788 synonymous SNV . 0 20 hm7G_associated_SNPs_32366 0 0 0 0 2 MROH9 chr1:170955702 3'AG 170955702 Downstream 87bp 29723 chr1 170955788 170955788 1 + C T COAD 170955789 + 170955769 170955809 41 CTTCACCTGATGATAAAATCGCATCTGATGCAGCATCCATA CTTCACCTGATGATAAAATTGCATCTGATGCAGCATCCATA < 41bp 0.520329566643047 0.726059712022667 NA NA prediction 0.41146029075924 Functional Gain - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170955789 chr1:170955788 synonymous SNV . 0 20 hm7G_associated_SNPs_32366 0 0 0 0 2 MROH9 chr1:170955851 5'GT 170955851 Upstream 64bp 29724 chr11 64055225 64055225 1 + C T CESC 64055226 + 64055206 64055246 41 GGGGCCTTTGTGGGGGCCTCGCTGCTCTTTCTGCTGGTGAA GGGGCCTTTGTGGGGGCCTTGCTGCTCTTTCTGCTGGTGAA < 41bp 0.523840152208572 0.729569309339863 NA NA prediction 0.411458314262582 Functional Gain - GPR137 ENSG00000173264 CDS Human protein_coding chr11:64055226 chr11:64055225 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_32367 0 0 1 0 1 GPR137 chr11:64055193 3'AG 64055193 Downstream 33bp 29725 chr19 54392899 54392899 1 + G A DLBC 54392900 + 54392880 54392920 41 CTCTGCCCCCAGGACCCCCGGAACAAACACAAGTTCCGCCT CTCTGCCCCCAGGACCCCCAGAACAAACACAAGTTCCGCCT < 41bp 0.478829116692906 0.705728240343844 NA NA prediction 0.411456480687688 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54392900 chr19:54392899 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_32368 0 0 0 0 1 PRKCG chr19:54392892 3'AG 54392892 Downstream 8bp 29726 chr17 7406728 7406728 1 + C T STAD 7406729 + 7406709 7406749 41 CCTCCCCTGTAACCTGCTGCGGATGATCTGGAATGCTCAGA CCTCCCCTGTAACCTGCTGTGGATGATCTGGAATGCTCAGA < 41bp 0.553528113604541 0.759254160712052 NA NA prediction 0.411452094215023 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7406729 chr17:7406728 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_32371 0 0 1 0 1 POLR2A chr17:7406704 3'AG 7406704 Downstream 25bp 29727 chr22 38212245 38212245 1 + C T STAD 38212246 + 38212226 38212266 41 GCTGCTGGCTTCACTATCTCGGGAGCCAGTCACCCCATCTG GCTGCTGGCTTCACTATCTTGGGAGCCAGTCACCCCATCTG < 41bp 0.506931884380296 0.71265624923318 NA NA prediction 0.411448729705769 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212246 chr22:38212245 nonsynonymous SNV 0.341 1 20 hm7G_associated_SNPs_32372 0 0 0 0 2 GCAT chr22:38212207 3'AG 38212207 Downstream 39bp 29728 chr22 38212245 38212245 1 + C T STAD 38212246 + 38212226 38212266 41 GCTGCTGGCTTCACTATCTCGGGAGCCAGTCACCCCATCTG GCTGCTGGCTTCACTATCTTGGGAGCCAGTCACCCCATCTG < 41bp 0.506931884380296 0.71265624923318 NA NA prediction 0.411448729705769 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212246 chr22:38212245 nonsynonymous SNV 0.341 1 20 hm7G_associated_SNPs_32372 0 0 0 0 2 GCAT chr22:38212328 5'GT 38212328 Upstream 84bp 29729 chr12 51092218 51092218 1 + C T COAD 51092219 + 51092199 51092239 41 GATAAAAATTCAGCACTGACGGTCCAGGATGTAGGGCATGT GATAAAAATTCAGCACTGATGGTCCAGGATGTAGGGCATGT < 41bp 0.508596140667132 0.714319999925678 NA NA prediction 0.411447718517092 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51092219 chr12:51092218 nonsynonymous SNV 0.862 4 20 hm7G_associated_SNPs_32373 0 0 1 0 1 DIP2B chr12:51092250 5'GT 51092250 Upstream 33bp 29730 chr1 231339743 231339743 1 + C T PAAD 231339744 + 231339724 231339764 41 TGGAGCTGGACGACGGTGCCGGGGGACAGTTCCGGGTGAGG TGGAGCTGGACGACGGTGCTGGGGGACAGTTCCGGGTGAGG < 41bp 0.493949677926928 0.705721996416871 NA NA prediction 0.411443992833741 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231339744 chr1:231339743 synonymous SNV . 0 20 hm7G_associated_SNPs_32374 0 0 0 0 1 TRIM67 chr1:231339758 5'GT 231339758 Upstream 16bp 29731 chr1 85595768 85595768 1 + G T COAD 85595769 + 85595749 85595789 41 AGCAAGAAAAGAAAGAAATGGAACTAGAAATGGCAAAGAAA AGCAAGAAAAGAAAGAAATTGAACTAGAAATGGCAAAGAAA < 41bp 0.686985293203194 0.892706863578399 NA NA prediction 0.411443140750412 Functional Gain - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85595769 chr1:85595768 nonsynonymous SNV 0.366 0 20 hm7G_associated_SNPs_32376 0 0 0 0 2 WDR63 chr1:85595673 3'AG 85595673 Downstream 96bp 29732 chr1 85595768 85595768 1 + G T COAD 85595769 + 85595749 85595789 41 AGCAAGAAAAGAAAGAAATGGAACTAGAAATGGCAAAGAAA AGCAAGAAAAGAAAGAAATTGAACTAGAAATGGCAAAGAAA < 41bp 0.686985293203194 0.892706863578399 NA NA prediction 0.411443140750412 Functional Gain - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85595769 chr1:85595768 nonsynonymous SNV 0.366 0 20 hm7G_associated_SNPs_32376 0 0 0 0 2 WDR63 chr1:85595795 5'GT 85595795 Upstream 28bp 29733 chr10 45480261 45480261 1 + G A rs556556302 45480262 + 45480242 45480282 41 TCACCCATTTCTCATGCAGGGCCCCTGGAGGAGGCAGAGGA TCACCCATTTCTCATGCAGAGCCCCTGGAGGAGGCAGAGGA < 41bp 0.557918533044671 0.7636397418686 NA NA prediction 0.411442417647857 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45480262 chr10:45480261 nonsynonymous SNV 0.460 0 20 hm7G_associated_SNPs_32377 0 0 1 0 1 RASSF4 chr10:45480261 3'AG 45480261 Downstream 1bp 29734 chr18 56646391 56646391 1 + C T rs374524248 56646392 + 56646372 56646412 41 AAGGCATCAGGAAAGTGTACGCCTGCTCGTAAGTCCTGGTT AAGGCATCAGGAAAGTGTATGCCTGCTCGTAAGTCCTGGTT < 41bp 0.493467520941193 0.705720776646079 NA NA prediction 0.411441553292158 Functional Gain - ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56646392 chr18:56646391 synonymous SNV . 0 20 hm7G_associated_SNPs_32378 0 0 0 0 2 ZNF532 chr18:56646387 3'AG 56646387 Downstream 5bp 29735 chr18 56646391 56646391 1 + C T rs374524248 56646392 + 56646372 56646412 41 AAGGCATCAGGAAAGTGTACGCCTGCTCGTAAGTCCTGGTT AAGGCATCAGGAAAGTGTATGCCTGCTCGTAAGTCCTGGTT < 41bp 0.493467520941193 0.705720776646079 NA NA prediction 0.411441553292158 Functional Gain - ZNF532 ENSG00000074657 CDS Human protein_coding chr18:56646392 chr18:56646391 synonymous SNV . 0 20 hm7G_associated_SNPs_32378 0 0 0 0 2 ZNF532 chr18:56646399 5'GT 56646399 Upstream 9bp 29736 chr1 156347099 156347099 1 + G T PAAD 156347100 + 156347080 156347120 41 TGCCCGCTGCAGGCTTCCAGGACGTGCATGCCATGGTCTTC TGCCCGCTGCAGGCTTCCATGACGTGCATGCCATGGTCTTC < 41bp 0.588008408959041 0.79372415536109 NA NA prediction 0.411431492804097 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156347100 chr1:156347099 stopgain 0.996 3 20 hm7G_associated_SNPs_32380 0 0 1 0 1 RHBG chr1:156347092 3'AG 156347092 Downstream 8bp 29737 chr20 31374317 31374317 1 + C T SKCM 31374318 + 31374298 31374338 41 TTGCTTCTAGGTCCGAACTCGAAATAACAACAGTGTCTCCA TTGCTTCTAGGTCCGAACTTGAAATAACAACAGTGTCTCCA < 41bp 0.506863702689665 0.712579177952485 NA NA prediction 0.411430950525641 Functional Gain - DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31374318 chr20:31374317 stopgain 0.986 0 20 hm7G_associated_SNPs_32381 0 0 0 0 1 DNMT3B chr20:31374308 3'AG 31374308 Downstream 10bp 29738 chr10 99211481 99211481 1 + C T ESCA 99211482 + 99211462 99211502 41 CCCGGCCCGCCTCTGCCTCCGCCTCCTTCTGCTGCTGGGTT CCCGGCCCGCCTCTGCCTCTGCCTCCTTCTGCTGCTGGGTT < 41bp 0.521811224276302 0.727524980883221 NA NA prediction 0.411427513213837 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211482 chr10:99211481 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32384 0 0 1 6 1 ZDHHC16 chr10:99211428 3'AG 99211428 Downstream 54bp 29739 chr22 39418975 39418975 1 + C T UCEC 39418976 + 39418956 39418996 41 TTGGGACACAGGGGTCTTTCGAGGCCCGGTACTACCCAAAC TTGGGACACAGGGGTCTTTTGAGGCCCGGTACTACCCAAAC < 41bp 0.50408989064723 0.709801200580609 NA NA prediction 0.411422619866757 Functional Gain - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39418976 chr22:39418975 stopgain 0.000 0 20 hm7G_associated_SNPs_32386 0 0 0 0 1 APOBEC3D chr22:39419019 5'GT 39419019 Upstream 45bp 29740 chr2 75100419 75100419 1 + G T CHOL 75100420 + 75100400 75100440 41 CAGAGTTTCCTGGTCTCATGGACCAAGGGATTCAAGTCCAG CAGAGTTTCCTGGTCTCATTGACCAAGGGATTCAAGTCCAG < 41bp 0.358814257720792 0.705709855673671 NA NA prediction 0.411419711347342 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75100420 chr2:75100419 nonsynonymous SNV 0.983 5 20 hm7G_associated_SNPs_32388 0 0 0 0 1 HK2 chr2:75100498 5'GT 75100498 Upstream 80bp 29741 chr16 8873372 8873372 1 + C T UCEC 8873373 + 8873353 8873393 41 CATCAGCAGGGTGAGAGGACGAGGCACCTTTTGCTCCTTCG CATCAGCAGGGTGAGAGGATGAGGCACCTTTTGCTCCTTCG < 41bp 0.545539398362184 0.75124798978642 NA NA prediction 0.411417182848471 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8873373 chr16:8873372 stopgain 0.960 1 20 hm7G_associated_SNPs_32389 0 0 1 0 2 ABAT chr16:8873336 3'AG 8873336 Downstream 37bp 29742 chr16 8873372 8873372 1 + C T UCEC 8873373 + 8873353 8873393 41 CATCAGCAGGGTGAGAGGACGAGGCACCTTTTGCTCCTTCG CATCAGCAGGGTGAGAGGATGAGGCACCTTTTGCTCCTTCG < 41bp 0.545539398362184 0.75124798978642 NA NA prediction 0.411417182848471 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8873373 chr16:8873372 stopgain 0.960 1 20 hm7G_associated_SNPs_32389 0 0 1 0 2 ABAT chr16:8873447 5'GT 8873447 Upstream 76bp 29743 chr7 139653225 139653225 1 + C T ESCA 139653226 + 139653206 139653246 41 GCTCATTTAAAACGCTATGCGGAATCTGGGGACGCATTTGA GCTCATTTAAAACGCTATGTGGAATCTGGGGACGCATTTGA < 41bp 0.487316809721486 0.705708125830829 NA NA prediction 0.411416251661657 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139653226 chr7:139653225 nonsynonymous SNV 0.636 3 20 hm7G_associated_SNPs_32390 0 0 0 0 2 TBXAS1 chr7:139653167 3'AG 139653167 Downstream 59bp 29744 chr7 139653225 139653225 1 + C T ESCA 139653226 + 139653206 139653246 41 GCTCATTTAAAACGCTATGCGGAATCTGGGGACGCATTTGA GCTCATTTAAAACGCTATGTGGAATCTGGGGACGCATTTGA < 41bp 0.487316809721486 0.705708125830829 NA NA prediction 0.411416251661657 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139653226 chr7:139653225 nonsynonymous SNV 0.636 3 20 hm7G_associated_SNPs_32390 0 0 0 0 2 TBXAS1 chr7:139653255 5'GT 139653255 Upstream 31bp 29745 chr19 1979526 1979526 1 + C T UCEC 1979527 + 1979507 1979547 41 GTACCTGCGCTATGTGCGGCGCCTGGACTTCTTCGAGAAGC GTACCTGCGCTATGTGCGGTGCCTGGACTTCTTCGAGAAGC < 41bp 0.520587780187629 0.726293804517743 NA NA prediction 0.411412048660228 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979527 chr19:1979526 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_32392 0 0 1 0 1 CSNK1G2 chr19:1979494 3'AG 1979494 Downstream 33bp 29746 chr19 45783878 45783878 1 + C T STAD 45783879 + 45783859 45783899 41 GCTGGCCCTGGCACGGGTGCGGGCGCCCAGCGACACCACCA GCTGGCCCTGGCACGGGTGTGGGCGCCCAGCGACACCACCA < 41bp 0.522099221725531 0.7278036949597 NA NA prediction 0.411408946468337 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45783879 chr19:45783878 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32394 0 0 1 0 1 MARK4 chr19:45783833 3'AG 45783833 Downstream 46bp 29747 chr12 56531357 56531357 1 + G A OV 56531358 + 56531338 56531378 41 TCTTGGGGGGACTGGTGAAGGGCAAGTCAGACCCCTATGTC TCTTGGGGGGACTGGTGAAAGGCAAGTCAGACCCCTATGTC < 41bp 0.523640202644935 0.729344138433015 NA NA prediction 0.41140787157616 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56531358 chr12:56531357 synonymous SNV . 0 20 hm7G_associated_SNPs_32395 0 0 1 0 1 ESYT1 chr12:56531283 3'AG 56531283 Downstream 75bp 29748 chr8 21958469 21958469 1 + C T SKCM 21958470 + 21958450 21958490 41 ATGGCAAAACAGCAGTGACCGAGATCGTCAACAGGTGGGGA ATGGCAAAACAGCAGTGACTGAGATCGTCAACAGGTGGGGA < 41bp 0.519027322280559 0.724730848382257 NA NA prediction 0.411407052203397 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21958470 chr8:21958469 synonymous SNV . 0 20 hm7G_associated_SNPs_32396 0 0 1 0 1 FAM160B2 chr8:21958483 5'GT 21958483 Upstream 15bp 29749 chrX 130215813 130215813 1 + G A SKCM 130215814 + 130215794 130215834 41 TACACAGCCTCTCTGAGCTGGAGCGTCTGAAGCTGCAAGAG TACACAGCCTCTCTGAGCTAGAGCGTCTGAAGCTGCAAGAG < 41bp 0.503752611536283 0.70945526995306 NA NA prediction 0.411405316833555 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130215814 chrX:130215813 synonymous SNV . 0 20 hm7G_associated_SNPs_32397 0 0 0 0 2 ARHGAP36 chrX:130215734 3'AG 130215734 Downstream 80bp 29750 chrX 130215813 130215813 1 + G A SKCM 130215814 + 130215794 130215834 41 TACACAGCCTCTCTGAGCTGGAGCGTCTGAAGCTGCAAGAG TACACAGCCTCTCTGAGCTAGAGCGTCTGAAGCTGCAAGAG < 41bp 0.503752611536283 0.70945526995306 NA NA prediction 0.411405316833555 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130215814 chrX:130215813 synonymous SNV . 0 20 hm7G_associated_SNPs_32397 0 0 0 0 2 ARHGAP36 chrX:130215892 5'GT 130215892 Upstream 80bp 29751 chr17 73566548 73566548 1 + G A COAD 73566549 + 73566529 73566569 41 CGGAGCCGGGTGTCCAGCCGGAAGCGGCACCCGGCTGGCCC CGGAGCCGGGTGTCCAGCCAGAAGCGGCACCCGGCTGGCCC < 41bp 0.488612624880329 0.705702655954616 NA NA prediction 0.411405311909232 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73566549 chr17:73566548 nonsynonymous SNV 0.298 0 20 hm7G_associated_SNPs_32398 0 0 1 0 1 LLGL2 chr17:73566579 5'GT 73566579 Upstream 32bp 29752 chr7 102110021 102110021 1 + C T COAD 102110022 + 102110002 102110042 41 TACCCCACCCCCTCTTCAGCGGCCTCCTATGACAAGCGGAT TACCCCACCCCCTCTTCAGTGGCCTCCTATGACAAGCGGAT < 41bp 0.504546024492593 0.710247410428608 NA NA prediction 0.411402771872031 Functional Gain - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102110022 chr7:102110021 nonsynonymous SNV 0.889 3 20 hm7G_associated_SNPs_32399 0 0 1 0 2 LRWD1 chr7:102110021 3'AG 102110021 Downstream 1bp 29753 chr7 102110021 102110021 1 + C T COAD 102110022 + 102110002 102110042 41 TACCCCACCCCCTCTTCAGCGGCCTCCTATGACAAGCGGAT TACCCCACCCCCTCTTCAGTGGCCTCCTATGACAAGCGGAT < 41bp 0.504546024492593 0.710247410428608 NA NA prediction 0.411402771872031 Functional Gain - LRWD1 ENSG00000161036 CDS Human protein_coding chr7:102110022 chr7:102110021 nonsynonymous SNV 0.889 3 20 hm7G_associated_SNPs_32399 0 0 1 0 2 LRWD1 chr7:102110093 5'GT 102110093 Upstream 73bp 29754 chr12 133197900 133197900 1 + G A SKCM 133197901 + 133197881 133197921 41 ACGCTCATCAAGGCCTACGGGATCCGCATTGACGTCATTGT ACGCTCATCAAGGCCTACGAGATCCGCATTGACGTCATTGT < 41bp 0.517864448447095 0.723564924496616 NA NA prediction 0.411400952099042 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197901 chr12:133197900 nonsynonymous SNV 0.854 4 20 hm7G_associated_SNPs_32400 0 0 0 0 3 P2RX2 chr12:133197841 3'AG 133197841 Downstream 60bp 29755 chr12 133197900 133197900 1 + G A SKCM 133197901 + 133197881 133197921 41 ACGCTCATCAAGGCCTACGGGATCCGCATTGACGTCATTGT ACGCTCATCAAGGCCTACGAGATCCGCATTGACGTCATTGT < 41bp 0.517864448447095 0.723564924496616 NA NA prediction 0.411400952099042 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197901 chr12:133197900 nonsynonymous SNV 0.854 4 20 hm7G_associated_SNPs_32400 0 0 0 0 3 P2RX2 chr12:133197931 5'GT 133197931 Upstream 32bp 29756 chr12 133197900 133197900 1 + G A SKCM 133197901 + 133197881 133197921 41 ACGCTCATCAAGGCCTACGGGATCCGCATTGACGTCATTGT ACGCTCATCAAGGCCTACGAGATCCGCATTGACGTCATTGT < 41bp 0.517864448447095 0.723564924496616 NA NA prediction 0.411400952099042 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133197901 chr12:133197900 nonsynonymous SNV 0.854 4 20 hm7G_associated_SNPs_32400 0 0 0 0 3 P2RX2 chr12:133197950 5'GT 133197950 Upstream 51bp 29757 chr2 209358019 209358019 1 + C T rs539493525 209358020 + 209358000 209358040 41 GGTGAAGAAGATGTGGAGTCGGTGGAACCTCTCCGTGGACT GGTGAAGAAGATGTGGAGTTGGTGGAACCTCTCCGTGGACT < 41bp 0.501526015719297 0.707226092330673 NA NA prediction 0.411400153222751 Functional Gain - PTH2R ENSG00000144407 CDS Human protein_coding chr2:209358020 chr2:209358019 nonsynonymous SNV 0.765 3 20 hm7G_associated_SNPs_32401 0 0 1 0 1 PTH2R chr2:209357989 3'AG 209357989 Downstream 31bp 29758 chr20 31601752 31601752 1 + G A OV 31601753 + 31601733 31601773 41 CCACGCCAACGAGTTTGATGGCAGTAACAGGTGGGTGCCTG CCACGCCAACGAGTTTGATAGCAGTAACAGGTGGGTGCCTG < 41bp 0.544911665566058 0.750611193429395 NA NA prediction 0.411399055726674 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31601753 chr20:31601752 nonsynonymous SNV 0.018 1 20 hm7G_associated_SNPs_32402 0 0 0 0 1 BPIFB2 chr20:31601762 5'GT 31601762 Upstream 11bp 29759 chr6 43172512 43172512 1 + C T LUAD 43172513 + 43172493 43172533 41 GAACAGCAAGGGTCGGGACCGGAGCCCGGCGCCTTCGCCAG GAACAGCAAGGGTCGGGACTGGAGCCCGGCGCCTTCGCCAG < 41bp 0.491222414834144 0.705696119971699 NA NA prediction 0.411392239943397 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43172513 chr6:43172512 nonsynonymous SNV 0.554 0 20 hm7G_associated_SNPs_32404 0 0 1 0 2 CUL9 chr6:43172486 3'AG 43172486 Downstream 27bp 29760 chr6 43172512 43172512 1 + C T LUAD 43172513 + 43172493 43172533 41 GAACAGCAAGGGTCGGGACCGGAGCCCGGCGCCTTCGCCAG GAACAGCAAGGGTCGGGACTGGAGCCCGGCGCCTTCGCCAG < 41bp 0.491222414834144 0.705696119971699 NA NA prediction 0.411392239943397 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43172513 chr6:43172512 nonsynonymous SNV 0.554 0 20 hm7G_associated_SNPs_32404 0 0 1 0 2 CUL9 chr6:43172595 5'GT 43172595 Upstream 84bp 29761 chr6 160501165 160501165 1 + C T rs139019277 160501166 + 160501146 160501186 41 TCTTCTTCTTTCCAGAAACCGATGACGGCGTCCCCTGTGTC TCTTCTTCTTTCCAGAAACTGATGACGGCGTCCCCTGTGTC < 41bp 0.495500635797139 0.705694182094221 NA NA prediction 0.411388364188442 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160501166 chr6:160501165 synonymous SNV . 0 20 hm7G_associated_SNPs_32405 0 0 1 0 1 IGF2R chr6:160501161 3'AG 160501161 Downstream 5bp 29762 chr1 19062204 19062204 1 + G A rs144861509 19062205 + 19062185 19062225 41 CATCTCCCCGCTGCATGGCGGCCTGGACTCGGCCACCTCCA CATCTCCCCGCTGCATGGCAGCCTGGACTCGGCCACCTCCA < 41bp 0.546712927851277 0.752406811030252 NA NA prediction 0.411387766357951 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19062205 chr1:19062204 nonsynonymous SNV 0.953 2 20 hm7G_associated_SNPs_32406 0 0 0 0 1 PAX7 chr1:19062126 3'AG 19062126 Downstream 79bp 29763 chr2 11735458 11735458 1 + C T STAD 11735459 + 11735439 11735479 41 GTCAATTACGAGCTGGTTACGGGGAAGGTAGACTCGCTGGG GTCAATTACGAGCTGGTTATGGGGAAGGTAGACTCGCTGGG < 41bp 0.545507750355715 0.751199851406914 NA NA prediction 0.411384202102398 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11735459 chr2:11735458 nonsynonymous SNV 0.727 4 20 hm7G_associated_SNPs_32407 0 0 1 0 2 GREB1 chr2:11735377 3'AG 11735377 Downstream 82bp 29764 chr2 11735458 11735458 1 + C T STAD 11735459 + 11735439 11735479 41 GTCAATTACGAGCTGGTTACGGGGAAGGTAGACTCGCTGGG GTCAATTACGAGCTGGTTATGGGGAAGGTAGACTCGCTGGG < 41bp 0.545507750355715 0.751199851406914 NA NA prediction 0.411384202102398 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11735459 chr2:11735458 nonsynonymous SNV 0.727 4 20 hm7G_associated_SNPs_32407 0 0 1 0 2 GREB1 chr2:11735505 5'GT 11735505 Upstream 48bp 29765 chr1 155581999 155581999 1 + C T PAAD 155582000 + 155581980 155582020 41 AGATCCTGTGTGACCTGCACGATGGCTTCTCTGGGGTAGGC AGATCCTGTGTGACCTGCATGATGGCTTCTCTGGGGTAGGC < 41bp 0.491713256809098 0.705690993239002 NA NA prediction 0.411381986478003 Functional Gain - MSTO1 ENSG00000125459 CDS Human protein_coding chr1:155582000 chr1:155581999 synonymous SNV . 0 20 hm7G_associated_SNPs_32408 0 0 1 0 1 MSTO1 chr1:155581973 3'AG 155581973 Downstream 27bp 29766 chr19 17875193 17875193 1 + C T SKCM 17875194 + 17875174 17875214 41 TCCTCCCCAGGGCCACCATCGAGGAGACCTACTCGAAGGCG TCCTCCCCAGGGCCACCATTGAGGAGACCTACTCGAAGGCG < 41bp 0.520009754265291 0.72569937102015 NA NA prediction 0.411379233509718 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17875194 chr19:17875193 synonymous SNV . 0 20 hm7G_associated_SNPs_32409 0 0 1 0 2 FCHO1 chr19:17875184 3'AG 17875184 Downstream 10bp 29767 chr19 17875193 17875193 1 + C T SKCM 17875194 + 17875174 17875214 41 TCCTCCCCAGGGCCACCATCGAGGAGACCTACTCGAAGGCG TCCTCCCCAGGGCCACCATTGAGGAGACCTACTCGAAGGCG < 41bp 0.520009754265291 0.72569937102015 NA NA prediction 0.411379233509718 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17875194 chr19:17875193 synonymous SNV . 0 20 hm7G_associated_SNPs_32409 0 0 1 0 2 FCHO1 chr19:17875258 5'GT 17875258 Upstream 66bp 29768 chr7 128587818 128587818 1 + C T CESC 128587819 + 128587799 128587839 41 CAAGTTTCAGTACCGGGGGCGGCCACCCCGGGCCCTCACCA CAAGTTTCAGTACCGGGGGTGGCCACCCCGGGCCCTCACCA < 41bp 0.507151845405294 0.712840675776175 NA NA prediction 0.411377660741761 Functional Gain - IRF5 ENSG00000128604 CDS Human protein_coding chr7:128587819 chr7:128587818 nonsynonymous SNV 0.906 4 20 hm7G_associated_SNPs_32410 0 0 0 0 1 IRF5 chr7:128587783 3'AG 128587783 Downstream 36bp 29769 chr15 75043549 75043549 1 + C T COAD 75043550 + 75043530 75043570 41 AACAGTGTCCGGGACATCACGGGTGCCCTGTTCAAGCACAG AACAGTGTCCGGGACATCATGGGTGCCCTGTTCAAGCACAG < 41bp 0.511296583832175 0.716984605219474 NA NA prediction 0.411376042774599 Functional Gain - CYP1A2 ENSG00000140505 CDS Human protein_coding chr15:75043550 chr15:75043549 nonsynonymous SNV 0.007 3 20 hm7G_associated_SNPs_32411 0 0 0 0 1 CYP1A2 chr15:75043530 3'AG 75043530 Downstream 20bp 29770 chrX 123159735 123159735 1 + C T UCEC 123159736 + 123159716 123159756 41 ACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAA ACACAGATTTTGAAGATATTGAAGGAAAAAACCAAAAGCAA < 41bp 0.498477104172355 0.705685887992797 NA NA prediction 0.411371775985594 Functional Gain - STAG2 ENSG00000101972 CDS Human protein_coding chrX:123159736 chrX:123159735 synonymous SNV . 0 20 hm7G_associated_SNPs_32412 0 0 1 0 2 STAG2 chrX:123159690 3'AG 123159690 Downstream 46bp 29771 chrX 123159735 123159735 1 + C T UCEC 123159736 + 123159716 123159756 41 ACACAGATTTTGAAGATATCGAAGGAAAAAACCAAAAGCAA ACACAGATTTTGAAGATATTGAAGGAAAAAACCAAAAGCAA < 41bp 0.498477104172355 0.705685887992797 NA NA prediction 0.411371775985594 Functional Gain - STAG2 ENSG00000101972 CDS Human protein_coding chrX:123159736 chrX:123159735 synonymous SNV . 0 20 hm7G_associated_SNPs_32412 0 0 1 0 2 STAG2 chrX:123159768 5'GT 123159768 Upstream 34bp 29772 chr19 34819055 34819055 1 + C T UCEC 34819056 + 34819036 34819076 41 GACAATCTGAAACTTAAGACGGTAGCTTTCCATGGGGTTCC GACAATCTGAAACTTAAGATGGTAGCTTTCCATGGGGTTCC < 41bp 0.492398877159621 0.705684909561712 NA NA prediction 0.411369819123423 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34819056 chr19:34819055 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_32414 0 0 0 0 1 KIAA0355 chr19:34819056 5'GT 34819056 Upstream 2bp 29773 chr11 45926710 45926710 1 + G A COAD 45926711 + 45926691 45926731 41 TGTCCCTGCAGGTACTTTGGGTTCATCACCAAGCACCCCGC TGTCCCTGCAGGTACTTTGAGTTCATCACCAAGCACCCCGC < 41bp 0.487598580993004 0.705683199840374 NA NA prediction 0.411366399680748 Functional Gain - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926711 chr11:45926710 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32416 0 0 0 0 2 MAPK8IP1 chr11:45926702 3'AG 45926702 Downstream 9bp 29774 chr11 45926710 45926710 1 + G A COAD 45926711 + 45926691 45926731 41 TGTCCCTGCAGGTACTTTGGGTTCATCACCAAGCACCCCGC TGTCCCTGCAGGTACTTTGAGTTCATCACCAAGCACCCCGC < 41bp 0.487598580993004 0.705683199840374 NA NA prediction 0.411366399680748 Functional Gain - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926711 chr11:45926710 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32416 0 0 0 0 2 MAPK8IP1 chr11:45926800 5'GT 45926800 Upstream 91bp 29775 chr17 8161424 8161424 1 + G A rs571357486 8161425 + 8161405 8161445 41 GGGCCTCCAGCTCCCAGACGGCCAGCGGCGTGAGTGGATCA GGGCCTCCAGCTCCCAGACAGCCAGCGGCGTGAGTGGATCA < 41bp 0.564421675297657 0.770103985876731 NA NA prediction 0.411364621158147 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8161425 chr17:8161424 nonsynonymous SNV 0.368 0 20 hm7G_associated_SNPs_32418 0 0 1 0 2 PFAS chr17:8161389 3'AG 8161389 Downstream 36bp 29776 chr17 8161424 8161424 1 + G A rs571357486 8161425 + 8161405 8161445 41 GGGCCTCCAGCTCCCAGACGGCCAGCGGCGTGAGTGGATCA GGGCCTCCAGCTCCCAGACAGCCAGCGGCGTGAGTGGATCA < 41bp 0.564421675297657 0.770103985876731 NA NA prediction 0.411364621158147 Functional Gain - PFAS ENSG00000178921 CDS Human protein_coding chr17:8161425 chr17:8161424 nonsynonymous SNV 0.368 0 20 hm7G_associated_SNPs_32418 0 0 1 0 2 PFAS chr17:8161517 5'GT 8161517 Upstream 94bp 29777 chr1 151261166 151261166 1 + C T STAD 151261167 + 151261147 151261187 41 GGCCTGTCTGCACGTCTCTCGCCGTGTAGGATACAGGTGCC GGCCTGTCTGCACGTCTCTTGCCGTGTAGGATACAGGTGCC < 41bp 0.510506360565784 0.716187909968525 NA NA prediction 0.411363098805481 Functional Gain - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151261167 chr1:151261166 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32419 0 0 1 0 1 ZNF687 chr1:151261182 5'GT 151261182 Upstream 17bp 29778 chr19 42353257 42353257 1 + G A SKCM 42353258 + 42353238 42353278 41 GCCCTTCACCACCTGCCCAGGATCTCACCCAGTACTGACAG GCCCTTCACCACCTGCCCAAGATCTCACCCAGTACTGACAG < 41bp 0.544907659947112 0.750588014619729 NA NA prediction 0.411360709345235 Functional Gain - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42353258 chr19:42353257 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_32421 0 0 0 0 2 DMRTC2 chr19:42353198 3'AG 42353198 Downstream 60bp 29779 chr19 42353257 42353257 1 + G A SKCM 42353258 + 42353238 42353278 41 GCCCTTCACCACCTGCCCAGGATCTCACCCAGTACTGACAG GCCCTTCACCACCTGCCCAAGATCTCACCCAGTACTGACAG < 41bp 0.544907659947112 0.750588014619729 NA NA prediction 0.411360709345235 Functional Gain - DMRTC2 ENSG00000142025 CDS Human protein_coding chr19:42353258 chr19:42353257 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_32421 0 0 0 0 2 DMRTC2 chr19:42353324 5'GT 42353324 Upstream 68bp 29780 chr1 32946573 32946573 1 + G A COAD 32946574 + 32946554 32946594 41 CAGAAGGGCATCCTCAAGCGGCACATCCGTTCACACACAGG CAGAAGGGCATCCTCAAGCAGCACATCCGTTCACACACAGG < 41bp 0.526751868021598 0.732428588590589 NA NA prediction 0.411353441137983 Functional Gain - ZBTB8B ENSG00000254553;ENSG00000273274 CDS Human other chr1:32946574 chr1:32946573 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_32424 0 0 0 0 1 ZBTB8B chr1:32946492 3'AG 32946492 Downstream 82bp 29781 chr19 50173686 50173686 1 + G A UCEC 50173687 + 50173667 50173707 41 GCTGGGGGGCACCCTGGCCGGACTCAGCGTGGAGCACGTGC GCTGGGGGGCACCCTGGCCAGACTCAGCGTGGAGCACGTGC < 41bp 0.533267347747595 0.738940380572125 NA NA prediction 0.411346065649061 Functional Gain - BCL2L12 ENSG00000126453 CDS Human protein_coding chr19:50173687 chr19:50173686 nonsynonymous SNV 0.980 2 20 hm7G_associated_SNPs_32426 0 0 1 0 1 BCL2L12 chr19:50173745 5'GT 50173745 Upstream 60bp 29782 chr11 64031214 64031214 1 + C T COAD 64031215 + 64031195 64031235 41 AACCAACCGCTGTGCCTGCCGGCCCTGCTCATCTACACCGA AACCAACCGCTGTGCCTGCTGGCCCTGCTCATCTACACCGA < 41bp 0.530719315329127 0.736390693811157 NA NA prediction 0.41134275696406 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64031215 chr11:64031214 nonsynonymous SNV 0.812 4 20 hm7G_associated_SNPs_32428 0 0 0 0 1 PLCB3 chr11:64031163 3'AG 64031163 Downstream 52bp 29783 chr19 57743987 57743987 1 + G A SKCM 57743988 + 57743968 57744008 41 ATTCTGGAATATGCTCCAAGGGGTGAGCTCTACAAGGAGCT ATTCTGGAATATGCTCCAAAGGGTGAGCTCTACAAGGAGCT < 41bp 0.538930102469213 0.744600035928786 NA NA prediction 0.411339866919147 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743988 chr19:57743987 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_32430 0 0 1 0 2 AURKC chr19:57743910 3'AG 57743910 Downstream 78bp 29784 chr19 57743987 57743987 1 + G A SKCM 57743988 + 57743968 57744008 41 ATTCTGGAATATGCTCCAAGGGGTGAGCTCTACAAGGAGCT ATTCTGGAATATGCTCCAAAGGGTGAGCTCTACAAGGAGCT < 41bp 0.538930102469213 0.744600035928786 NA NA prediction 0.411339866919147 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57743988 chr19:57743987 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_32430 0 0 1 0 2 AURKC chr19:57744048 5'GT 57744048 Upstream 62bp 29785 chr19 36034590 36034590 1 + G A CESC 36034591 + 36034571 36034611 41 CTGACAGGGATGGCGTTCCGGGTACCAACCCCGGATGTGTC CTGACAGGGATGGCGTTCCAGGTACCAACCCCGGATGTGTC < 41bp 0.543333937772088 0.749003071998898 NA NA prediction 0.411338268453622 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034591 chr19:36034590 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_32431 0 0 0 0 1 GAPDHS chr19:36034567 3'AG 36034567 Downstream 24bp 29786 chr17 42850735 42850735 1 + G A LUSC 42850736 + 42850716 42850756 41 CTCCTGGAGACCCTGGCCCGGCTCATGGTCTACCGACGGGA CTCCTGGAGACCCTGGCCCAGCTCATGGTCTACCGACGGGA < 41bp 0.585256696975211 0.790925155886639 NA NA prediction 0.411336917822857 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42850736 chr17:42850735 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_32432 0 0 1 0 1 ADAM11 chr17:42850795 5'GT 42850795 Upstream 61bp 29787 chr10 94654714 94654714 1 + C T UCEC 94654715 + 94654695 94654735 41 CCACACAGAAGATATCATTCGATGTAGAATTCAGCAGAGAA CCACACAGAAGATATCATTTGATGTAGAATTCAGCAGAGAA < 41bp 0.504259797784153 0.709927208054971 NA NA prediction 0.411334820541636 Functional Gain - EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94654715 chr10:94654714 stopgain 1.000 1 20 hm7G_associated_SNPs_32433 0 0 1 0 2 EXOC6 chr10:94654687 3'AG 94654687 Downstream 28bp 29788 chr10 94654714 94654714 1 + C T UCEC 94654715 + 94654695 94654735 41 CCACACAGAAGATATCATTCGATGTAGAATTCAGCAGAGAA CCACACAGAAGATATCATTTGATGTAGAATTCAGCAGAGAA < 41bp 0.504259797784153 0.709927208054971 NA NA prediction 0.411334820541636 Functional Gain - EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94654715 chr10:94654714 stopgain 1.000 1 20 hm7G_associated_SNPs_32433 0 0 1 0 2 EXOC6 chr10:94654777 5'GT 94654777 Upstream 64bp 29789 chr8 87543407 87543407 1 + C T UCEC 87543408 + 87543388 87543428 41 TTCCAGCAAGAAGCTAACTCGACCACTGGTGATGAAAACTG TTCCAGCAAGAAGCTAACTTGACCACTGGTGATGAAAACTG < 41bp 0.505206377484217 0.710873117009607 NA NA prediction 0.411333479050779 Functional Gain - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87543408 chr8:87543407 stopgain 1.000 1 20 hm7G_associated_SNPs_32435 0 0 1 0 2 CPNE3 chr8:87543383 3'AG 87543383 Downstream 25bp 29790 chr8 87543407 87543407 1 + C T UCEC 87543408 + 87543388 87543428 41 TTCCAGCAAGAAGCTAACTCGACCACTGGTGATGAAAACTG TTCCAGCAAGAAGCTAACTTGACCACTGGTGATGAAAACTG < 41bp 0.505206377484217 0.710873117009607 NA NA prediction 0.411333479050779 Functional Gain - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87543408 chr8:87543407 stopgain 1.000 1 20 hm7G_associated_SNPs_32435 0 0 1 0 2 CPNE3 chr8:87543457 5'GT 87543457 Upstream 51bp 29791 chr16 89782976 89782976 1 - C T rs191271054 89782975 - 89782955 89782995 41 TCCCATTCCCCAGCCTGCCGGCCGACACCGCCGTGTATACT TCCCATTCCCCAGCCTGCCAGCCGACACCGCCGTGTATACT < 41bp 0.56855871765833 0.774224458424108 NA NA prediction 0.411331481531555 Functional Gain - VPS9D1 ENSG00000075399 CDS Human protein_coding chr16:89782975 chr16:89782976 nonsynonymous SNV 0.090 0 20 hm7G_associated_SNPs_32436 0 0 0 0 1 VPS9D1 chr16:89783032 3'AG 89783032 Downstream 57bp 29792 chr1 101200253 101200253 1 + C T STAD 101200254 + 101200234 101200274 41 AAGGCCCAGTTGAAGGATGCGGGAGTATATGAATGTGAATC AAGGCCCAGTTGAAGGATGTGGGAGTATATGAATGTGAATC < 41bp 0.504667646487577 0.710331603867328 NA NA prediction 0.411327914759502 Functional Gain - VCAM1 ENSG00000162692 CDS Human protein_coding chr1:101200254 chr1:101200253 nonsynonymous SNV 0.022 3 20 hm7G_associated_SNPs_32437 0 0 0 0 1 VCAM1 chr1:101200324 5'GT 101200324 Upstream 72bp 29793 chr12 113314485 113314485 1 + C T COAD 113314486 + 113314466 113314506 41 TGGGACCACTGCCCCACCCCGAGAGGAGAGAACAGGGGGAG TGGGACCACTGCCCCACCCTGAGAGGAGAGAACAGGGGGAG < 41bp 0.516305151059223 0.72196735027288 NA NA prediction 0.411324398427314 Functional Gain - RPH3A ENSG00000089169 CDS Human protein_coding chr12:113314486 chr12:113314485 stopgain 0.047 0 20 hm7G_associated_SNPs_32438 0 0 0 0 1 RPH3A chr12:113314447 3'AG 113314447 Downstream 39bp 29794 chr1 212254045 212254045 1 + C T ESCA 212254046 + 212254026 212254066 41 GGAGGTGATAAACTTTCCACGGTGGGTTGGGCCTCTCAGAA GGAGGTGATAAACTTTCCATGGTGGGTTGGGCCTCTCAGAA < 41bp 0.545811939493451 0.751473753689179 NA NA prediction 0.411323628391456 Functional Gain - DTL ENSG00000143476 CDS Human protein_coding chr1:212254046 chr1:212254045 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_32439 0 0 1 0 2 DTL chr1:212253957 3'AG 212253957 Downstream 89bp 29795 chr1 212254045 212254045 1 + C T ESCA 212254046 + 212254026 212254066 41 GGAGGTGATAAACTTTCCACGGTGGGTTGGGCCTCTCAGAA GGAGGTGATAAACTTTCCATGGTGGGTTGGGCCTCTCAGAA < 41bp 0.545811939493451 0.751473753689179 NA NA prediction 0.411323628391456 Functional Gain - DTL ENSG00000143476 CDS Human protein_coding chr1:212254046 chr1:212254045 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_32439 0 0 1 0 2 DTL chr1:212254092 5'GT 212254092 Upstream 48bp 29796 chr1 200869275 200869275 1 + G A SKCM 200869276 + 200869256 200869296 41 GAGTATCCCCTCAAACCAGGGGAAAAGGCCCCCAAGGTTCG GAGTATCCCCTCAAACCAGAGGAAAAGGCCCCCAAGGTTCG < 41bp 0.570691502938436 0.776353102310662 NA NA prediction 0.411323198744453 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869276 chr1:200869275 nonsynonymous SNV 0.399 3 20 hm7G_associated_SNPs_32440 0 0 1 0 2 C1orf106 chr1:200869232 3'AG 200869232 Downstream 44bp 29797 chr1 200869275 200869275 1 + G A SKCM 200869276 + 200869256 200869296 41 GAGTATCCCCTCAAACCAGGGGAAAAGGCCCCCAAGGTTCG GAGTATCCCCTCAAACCAGAGGAAAAGGCCCCCAAGGTTCG < 41bp 0.570691502938436 0.776353102310662 NA NA prediction 0.411323198744453 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869276 chr1:200869275 nonsynonymous SNV 0.399 3 20 hm7G_associated_SNPs_32440 0 0 1 0 2 C1orf106 chr1:200869348 5'GT 200869348 Upstream 74bp 29798 chr7 154739639 154739639 1 - G A COAD 154739638 - 154739618 154739658 41 CTTGGAAGAATCCTTAAAACGGGCACACGTTTCTCCACTCT CTTGGAAGAATCCTTAAAATGGGCACACGTTTCTCCACTCT < 41bp 0.509486762271156 0.715146211523656 NA NA prediction 0.411318898505 Functional Gain - PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154739638 chr7:154739639 nonsynonymous SNV 0.534 3 20 hm7G_associated_SNPs_32443 0 0 1 0 2 PAXIP1 chr7:154739613 5'GT 154739613 Upstream 27bp 29799 chr7 154739639 154739639 1 - G A COAD 154739638 - 154739618 154739658 41 CTTGGAAGAATCCTTAAAACGGGCACACGTTTCTCCACTCT CTTGGAAGAATCCTTAAAATGGGCACACGTTTCTCCACTCT < 41bp 0.509486762271156 0.715146211523656 NA NA prediction 0.411318898505 Functional Gain - PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154739638 chr7:154739639 nonsynonymous SNV 0.534 3 20 hm7G_associated_SNPs_32443 0 0 1 0 2 PAXIP1 chr7:154739713 3'AG 154739713 Downstream 75bp 29800 chr17 47875854 47875854 1 + C T UCEC 47875855 + 47875835 47875875 41 TCTCTCTCATCGCCCCAAGCGCCGTCGCTTCCATGAAAGCT TCTCTCTCATCGCCCCAAGTGCCGTCGCTTCCATGAAAGCT < 41bp 0.52593967821535 0.731599087427894 NA NA prediction 0.411318818425088 Functional Gain - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47875855 chr17:47875854 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32444 0 0 1 0 1 KAT7 chr17:47875920 5'GT 47875920 Upstream 67bp 29801 chr5 23509620 23509620 1 + G T LUAD 23509621 + 23509601 23509641 41 TTTCCATATACTTCACCAAGGAAGAATGGGCAGAGATGGGA TTTCCATATACTTCACCAATGAAGAATGGGCAGAGATGGGA < 41bp 0.70098702942471 0.90664393178622 NA NA prediction 0.41131380472302 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509621 chr5:23509620 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_32446 0 0 0 0 2 PRDM9 chr5:23509579 3'AG 23509579 Downstream 42bp 29802 chr5 23509620 23509620 1 + G T LUAD 23509621 + 23509601 23509641 41 TTTCCATATACTTCACCAAGGAAGAATGGGCAGAGATGGGA TTTCCATATACTTCACCAATGAAGAATGGGCAGAGATGGGA < 41bp 0.70098702942471 0.90664393178622 NA NA prediction 0.41131380472302 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509621 chr5:23509620 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_32446 0 0 0 0 2 PRDM9 chr5:23509702 5'GT 23509702 Upstream 83bp 29803 chr7 148963740 148963740 1 + G A SKCM 148963741 + 148963721 148963761 41 GGCTGCTGCAGAGGCGGCTGGAGAATGTGGAGAACTTGCTG GGCTGCTGCAGAGGCGGCTAGAGAATGTGGAGAACTTGCTG < 41bp 0.521084465104123 0.726740251569579 NA NA prediction 0.411311572930913 Functional Gain - ZNF783 ENSG00000204946 CDS Human protein_coding chr7:148963741 chr7:148963740 synonymous SNV . 0 20 hm7G_associated_SNPs_32448 0 0 1 0 1 ZNF783 chr7:148963821 5'GT 148963821 Upstream 82bp 29804 chr4 48486088 48486088 1 + G A STAD 48486089 + 48486069 48486109 41 ACGAGGTGGCCGCCGTGGCGGTGCTCCTGTGTGGCTGCTGT ACGAGGTGGCCGCCGTGGCAGTGCTCCTGTGTGGCTGCTGT < 41bp 0.515103071333364 0.720756867814366 NA NA prediction 0.411307592962002 Functional Gain - SLC10A4 ENSG00000145248 CDS Human protein_coding chr4:48486089 chr4:48486088 synonymous SNV . 0 20 hm7G_associated_SNPs_32450 0 0 0 0 1 SLC10A4 chr4:48486168 5'GT 48486168 Upstream 81bp 29805 chr11 123448200 123448200 1 + C T STAD 123448201 + 123448181 123448221 41 AAGGGCTCAGATCACTCCTCGGACAAGTCCCCGTCCACACC AAGGGCTCAGATCACTCCTTGGACAAGTCCCCGTCCACACC < 41bp 0.491158279493362 0.70565207265927 NA NA prediction 0.41130414531854 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123448201 chr11:123448200 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_32452 0 0 1 0 1 GRAMD1B chr11:123448285 5'GT 123448285 Upstream 86bp 29806 chr1 205034249 205034249 1 + C T UCEC 205034250 + 205034230 205034270 41 CTCTAGCCCCCTCAAGTGCCGACATCAACTTGGGTGACAAC CTCTAGCCCCCTCAAGTGCTGACATCAACTTGGGTGACAAC < 41bp 0.540291198189713 0.745942532016932 NA NA prediction 0.411302667654437 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205034250 chr1:205034249 synonymous SNV . 0 20 hm7G_associated_SNPs_32453 0 0 0 0 1 CNTN2 chr1:205034215 3'AG 205034215 Downstream 35bp 29807 chr4 6606969 6606969 1 + C T STAD 6606970 + 6606950 6606990 41 AGGAGACGCACCAGCCATGCGGGCAGGTACTTGGTGCCTGT AGGAGACGCACCAGCCATGTGGGCAGGTACTTGGTGCCTGT < 41bp 0.499043791808358 0.705650217267482 NA NA prediction 0.411300434534964 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6606970 chr4:6606969 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_32455 0 0 0 0 1 MAN2B2 chr4:6607056 5'GT 6607056 Upstream 88bp 29808 chr7 150267005 150267005 1 + G A rs147666000 150267006 + 150266986 150267026 41 GACAATGGCAGCCCAATACGGCAGTATGAGCTTCAACCCCA GACAATGGCAGCCCAATACAGCAGTATGAGCTTCAACCCCA < 41bp 0.533006132410589 0.738655932445359 NA NA prediction 0.41129960006954 Functional Gain - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267006 chr7:150267005 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_32457 0 0 0 0 3 GIMAP4 chr7:150266976 3'AG 150266976 Downstream 30bp 29809 chr7 150267005 150267005 1 + G A rs147666000 150267006 + 150266986 150267026 41 GACAATGGCAGCCCAATACGGCAGTATGAGCTTCAACCCCA GACAATGGCAGCCCAATACAGCAGTATGAGCTTCAACCCCA < 41bp 0.533006132410589 0.738655932445359 NA NA prediction 0.41129960006954 Functional Gain - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267006 chr7:150267005 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_32457 0 0 0 0 3 GIMAP4 chr7:150267047 5'GT 150267047 Upstream 43bp 29810 chr7 150267005 150267005 1 + G A rs147666000 150267006 + 150266986 150267026 41 GACAATGGCAGCCCAATACGGCAGTATGAGCTTCAACCCCA GACAATGGCAGCCCAATACAGCAGTATGAGCTTCAACCCCA < 41bp 0.533006132410589 0.738655932445359 NA NA prediction 0.41129960006954 Functional Gain - GIMAP4 ENSG00000133574 CDS Human protein_coding chr7:150267006 chr7:150267005 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_32457 0 0 0 0 3 GIMAP4 chr7:150267089 5'GT 150267089 Upstream 85bp 29811 chr1 231335933 231335933 1 + C T HNSC 231335934 + 231335914 231335954 41 TCACTGCACATTGAAGCTGCGTCAGTCCACCGGACTGATGG TCACTGCACATTGAAGCTGTGTCAGTCCACCGGACTGATGG < 41bp 0.499823138590756 0.705648721220249 NA NA prediction 0.411297442440497 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231335934 chr1:231335933 nonsynonymous SNV 0.916 4 20 hm7G_associated_SNPs_32459 0 0 0 0 2 TRIM67 chr1:231335894 3'AG 231335894 Downstream 40bp 29812 chr1 231335933 231335933 1 + C T HNSC 231335934 + 231335914 231335954 41 TCACTGCACATTGAAGCTGCGTCAGTCCACCGGACTGATGG TCACTGCACATTGAAGCTGTGTCAGTCCACCGGACTGATGG < 41bp 0.499823138590756 0.705648721220249 NA NA prediction 0.411297442440497 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231335934 chr1:231335933 nonsynonymous SNV 0.916 4 20 hm7G_associated_SNPs_32459 0 0 0 0 2 TRIM67 chr1:231336004 5'GT 231336004 Upstream 72bp 29813 chr2 241808422 241808422 1 + G T LUAD 241808423 + 241808403 241808443 41 GGGGGGCTGCAGATGATCGGGTCCATGAGCAAGGATATGTA GGGGGGCTGCAGATGATCGTGTCCATGAGCAAGGATATGTA < 41bp 0.377379486574088 0.70564619802933 NA NA prediction 0.411292396058661 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241808423 chr2:241808422 nonsynonymous SNV 0.147 5 20 hm7G_associated_SNPs_32461 0 0 1 0 1 AGXT chr2:241808447 5'GT 241808447 Upstream 26bp 29814 chr12 49951225 49951225 1 + G A SKCM 49951226 + 49951206 49951246 41 CTTGTCCTGGCGCCCCACAGGGAGGGTCCGTGCCCTCGGGC CTTGTCCTGGCGCCCCACAAGGAGGGTCCGTGCCCTCGGGC < 41bp 0.47860181421592 0.705642499138748 NA NA prediction 0.411284998277496 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49951226 chr12:49951225 nonsynonymous SNV 0.064 1 20 hm7G_associated_SNPs_32464 0 0 0 0 1 KCNH3 chr12:49951137 3'AG 49951137 Downstream 89bp 29815 chr15 50475097 50475097 1 + C T GBM 50475098 + 50475078 50475118 41 GCGAAGGTGCTGCTGGTGTCGCCAGGTGAGCCCCGAGGATC GCGAAGGTGCTGCTGGTGTTGCCAGGTGAGCCCCGAGGATC < 41bp 0.506222760278066 0.711862698881657 NA NA prediction 0.411279877207182 Functional Gain - SLC27A2 ENSG00000140284 CDS Human protein_coding chr15:50475098 chr15:50475097 nonsynonymous SNV 0.934 1 20 hm7G_associated_SNPs_32465 0 0 1 0 1 SLC27A2 chr15:50475102 5'GT 50475102 Upstream 6bp 29816 chr19 50949255 50949255 1 + C T SKCM 50949256 + 50949236 50949276 41 GGTCCAGGAGGACAGGGGTCGCTATCAGGTCATAACCAATG GGTCCAGGAGGACAGGGGTTGCTATCAGGTCATAACCAATG < 41bp 0.519616127101644 0.725254403210431 NA NA prediction 0.411276552217575 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50949256 chr19:50949255 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_32466 0 0 0 0 1 MYBPC2 chr19:50949309 5'GT 50949309 Upstream 55bp 29817 chr1 16069550 16069550 1 + G A rs139059704 16069551 + 16069531 16069571 41 CCCGAAAAGGAGCGGCTTCGGGCCCAGTGGGCCTCCCTGGA CCCGAAAAGGAGCGGCTTCAGGCCCAGTGGGCCTCCCTGGA < 41bp 0.595124742333418 0.800762377272202 NA NA prediction 0.411275269877568 Functional Gain - TMEM82 ENSG00000162460 CDS Human protein_coding chr1:16069551 chr1:16069550 nonsynonymous SNV 0.065 0 20 hm7G_associated_SNPs_32467 0 0 0 0 1 TMEM82 chr1:16069515 3'AG 16069515 Downstream 36bp 29818 chr15 65219113 65219113 1 + C T READ 65219114 + 65219094 65219134 41 GGCCAGCTGGGGAGGACGGCGTTTCACAGGGCAGCTGAGCA GGCCAGCTGGGGAGGACGGTGTTTCACAGGGCAGCTGAGCA < 41bp 0.499224726295697 0.705635157796244 NA NA prediction 0.411270315592488 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219114 chr15:65219113 nonsynonymous SNV 0.938 3 20 hm7G_associated_SNPs_32468 0 0 0 0 2 ANKDD1A chr15:65219100 3'AG 65219100 Downstream 14bp 29819 chr15 65219113 65219113 1 + C T READ 65219114 + 65219094 65219134 41 GGCCAGCTGGGGAGGACGGCGTTTCACAGGGCAGCTGAGCA GGCCAGCTGGGGAGGACGGTGTTTCACAGGGCAGCTGAGCA < 41bp 0.499224726295697 0.705635157796244 NA NA prediction 0.411270315592488 Functional Gain - ANKDD1A ENSG00000166839 CDS Human protein_coding chr15:65219114 chr15:65219113 nonsynonymous SNV 0.938 3 20 hm7G_associated_SNPs_32468 0 0 0 0 2 ANKDD1A chr15:65219198 5'GT 65219198 Upstream 86bp 29820 chr20 33851598 33851598 1 + C T GBM 33851599 + 33851579 33851619 41 CACTCCTCTCCACAGGGAACGACCTCTTCCTGGTGGCTGTG CACTCCTCTCCACAGGGAATGACCTCTTCCTGGTGGCTGTG < 41bp 0.513617348572482 0.719252117305387 NA NA prediction 0.41126953746581 Functional Gain - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33851599 chr20:33851598 synonymous SNV . 0 20 hm7G_associated_SNPs_32469 0 0 0 0 1 MMP24 chr20:33851594 3'AG 33851594 Downstream 5bp 29821 chr16 67320948 67320948 1 + C T UCEC 67320949 + 67320929 67320969 41 CTGTGGGAACAGCAACCTGCGCTTCGAGATCTGGTTCCGCC CTGTGGGAACAGCAACCTGTGCTTCGAGATCTGGTTCCGCC < 41bp 0.535850829155319 0.741484621365559 NA NA prediction 0.411267584420481 Functional Gain - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67320949 chr16:67320948 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_32470 0 0 0 0 1 PLEKHG4 chr16:67320903 3'AG 67320903 Downstream 46bp 29822 chr6 168440858 168440858 1 + C T UCEC 168440859 + 168440839 168440879 41 AGGTCTCACCTGATAATTACGGTGACTCTAACCACAGCCTC AGGTCTCACCTGATAATTATGGTGACTCTAACCACAGCCTC < 41bp 0.542504279894599 0.748137122536128 NA NA prediction 0.411265685283059 Functional Gain - KIF25 ENSG00000125337 CDS Human protein_coding chr6:168440859 chr6:168440858 nonsynonymous SNV 0.001 4 20 hm7G_associated_SNPs_32471 0 0 0 0 1 KIF25 chr6:168440896 5'GT 168440896 Upstream 39bp 29823 chr11 55653297 55653297 1 + G T LUAD 55653298 + 55653278 55653318 41 TACACTGTCCCATTGAGTGGGCTGCTGAGGAACGCCGGGTA TACACTGTCCCATTGAGTGTGCTGCTGAGGAACGCCGGGTA < 41bp 0.693864080718702 0.899492509184349 NA NA prediction 0.411256856931295 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55653298 chr11:55653297 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_32476 0 0 0 0 1 TRIM51 chr11:55653315 5'GT 55653315 Upstream 19bp 29824 chr19 1979588 1979588 1 + C T UCEC 1979589 + 1979569 1979609 41 AGCTCTTCACCGACCTCTTCGACCGCAGTGGCTTCGTGTTC AGCTCTTCACCGACCTCTTTGACCGCAGTGGCTTCGTGTTC < 41bp 0.527180128935423 0.732807555900197 NA NA prediction 0.411254853929549 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979589 chr19:1979588 synonymous SNV . 0 20 hm7G_associated_SNPs_32477 0 0 1 0 2 CSNK1G2 chr19:1979494 3'AG 1979494 Downstream 95bp 29825 chr19 1979588 1979588 1 + C T UCEC 1979589 + 1979569 1979609 41 AGCTCTTCACCGACCTCTTCGACCGCAGTGGCTTCGTGTTC AGCTCTTCACCGACCTCTTTGACCGCAGTGGCTTCGTGTTC < 41bp 0.527180128935423 0.732807555900197 NA NA prediction 0.411254853929549 Functional Gain - CSNK1G2 ENSG00000133275 CDS Human protein_coding chr19:1979589 chr19:1979588 synonymous SNV . 0 20 hm7G_associated_SNPs_32477 0 0 1 0 2 CSNK1G2 chr19:1979642 5'GT 1979642 Upstream 55bp 29826 chr19 46176156 46176156 1 + G A SKCM 46176157 + 46176137 46176177 41 TGGCAGTGATGGCCAATGGGGACTTTGGAGAGACCATACAC TGGCAGTGATGGCCAATGGAGACTTTGGAGAGACCATACAC < 41bp 0.513771528582263 0.719398757318976 NA NA prediction 0.411254457473426 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46176157 chr19:46176156 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_32478 0 0 1 0 2 GIPR chr19:46176109 3'AG 46176109 Downstream 48bp 29827 chr19 46176156 46176156 1 + G A SKCM 46176157 + 46176137 46176177 41 TGGCAGTGATGGCCAATGGGGACTTTGGAGAGACCATACAC TGGCAGTGATGGCCAATGGAGACTTTGGAGAGACCATACAC < 41bp 0.513771528582263 0.719398757318976 NA NA prediction 0.411254457473426 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46176157 chr19:46176156 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_32478 0 0 1 0 2 GIPR chr19:46176212 5'GT 46176212 Upstream 57bp 29828 chr16 57261270 57261270 1 + G A LUSC 57261271 + 57261251 57261291 41 CAGGAAGGCTACGGCATTGGGGATGATGAATACTCCTGTGC CAGGAAGGCTACGGCATTGAGGATGATGAATACTCCTGTGC < 41bp 0.484890625782274 0.705626305890631 NA NA prediction 0.411252611781263 Functional Gain - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57261271 chr16:57261270 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_32479 0 0 1 0 2 RSPRY1 chr16:57261254 3'AG 57261254 Downstream 17bp 29829 chr16 57261270 57261270 1 + G A LUSC 57261271 + 57261251 57261291 41 CAGGAAGGCTACGGCATTGGGGATGATGAATACTCCTGTGC CAGGAAGGCTACGGCATTGAGGATGATGAATACTCCTGTGC < 41bp 0.484890625782274 0.705626305890631 NA NA prediction 0.411252611781263 Functional Gain - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57261271 chr16:57261270 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_32479 0 0 1 0 2 RSPRY1 chr16:57261365 5'GT 57261365 Upstream 96bp 29830 chr11 60885667 60885667 1 + C T LIHC 60885668 + 60885648 60885688 41 TTTCCAGGCAAGGCTCACCCGTTCCAACTCGAAGTGCCAGG TTTCCAGGCAAGGCTCACCTGTTCCAACTCGAAGTGCCAGG < 41bp 0.500226007597985 0.705851005382808 NA NA prediction 0.411249995569647 Functional Gain - CD5 ENSG00000110448 CDS Human protein_coding chr11:60885668 chr11:60885667 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_32480 0 0 0 0 1 CD5 chr11:60885647 3'AG 60885647 Downstream 21bp 29831 chr16 89598439 89598439 1 + C T UCEC 89598440 + 89598420 89598460 41 GCTCAGGTGCCCTTCCTGGCGATGGCCGGCCCAGAGTTCGT GCTCAGGTGCCCTTCCTGGTGATGGCCGGCCCAGAGTTCGT < 41bp 0.529948069880341 0.73557276920861 NA NA prediction 0.411249398656538 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89598440 chr16:89598439 nonsynonymous SNV 0.839 5 20 hm7G_associated_SNPs_32481 0 0 1 0 1 SPG7 chr16:89598474 5'GT 89598474 Upstream 36bp 29832 chr5 96232477 96232477 1 + G T COAD 96232478 + 96232458 96232498 41 TCAAGGATTTTCTGGGTGAGGAGAAATTCCAGAAAGGAATA TCAAGGATTTTCTGGGTGATGAGAAATTCCAGAAAGGAATA < 41bp 0.383855058877253 0.705622121890301 NA NA prediction 0.411244243780603 Functional Gain - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96232478 chr5:96232477 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_32484 0 0 0 0 2 ERAP2 chr5:96232436 3'AG 96232436 Downstream 42bp 29833 chr5 96232477 96232477 1 + G T COAD 96232478 + 96232458 96232498 41 TCAAGGATTTTCTGGGTGAGGAGAAATTCCAGAAAGGAATA TCAAGGATTTTCTGGGTGATGAGAAATTCCAGAAAGGAATA < 41bp 0.383855058877253 0.705622121890301 NA NA prediction 0.411244243780603 Functional Gain - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96232478 chr5:96232477 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_32484 0 0 0 0 2 ERAP2 chr5:96232567 5'GT 96232567 Upstream 91bp 29834 chr6 97051612 97051612 1 + C T COAD 97051613 + 97051593 97051633 41 GTGTATTTTCTAACTATTGCGAGGAATGCAAAAAACCAATT GTGTATTTTCTAACTATTGTGAGGAATGCAAAAAACCAATT < 41bp 0.505362197817778 0.710981036200409 NA NA prediction 0.411237676765261 Functional Gain - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97051613 chr6:97051612 synonymous SNV . 0 20 hm7G_associated_SNPs_32486 0 0 0 0 1 FHL5 chr6:97051648 5'GT 97051648 Upstream 37bp 29835 chr1 156621251 156621251 1 + C T rs12065791 156621252 + 156621232 156621272 41 TTTCCTCCTGCCACAGACTCGGCCCAGCCTTCTGCCATCCC TTTCCTCCTGCCACAGACTTGGCCCAGCCTTCTGCCATCCC < 41bp 0.533854150731017 0.739468891998063 NA NA prediction 0.411229482534091 Functional Gain - BCAN ENSG00000132692 CDS Human protein_coding chr1:156621252 chr1:156621251 nonsynonymous SNV 0.850 0 20 hm7G_associated_SNPs_32489 0 0 0 0 1 BCAN chr1:156621248 3'AG 156621248 Downstream 4bp 29836 chr21 46931112 46931112 1 + G A UCEC 46931113 + 46931093 46931133 41 ACGCATCTTCTCCTTTGACGGCAAGGACGTCCTGAGGCACC ACGCATCTTCTCCTTTGACAGCAAGGACGTCCTGAGGCACC < 41bp 0.496004395296286 0.70561360989403 NA NA prediction 0.411227219788061 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931113 chr21:46931112 nonsynonymous SNV 0.699 4 20 hm7G_associated_SNPs_32490 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 88bp 29837 chr21 46931112 46931112 1 + G A UCEC 46931113 + 46931093 46931133 41 ACGCATCTTCTCCTTTGACGGCAAGGACGTCCTGAGGCACC ACGCATCTTCTCCTTTGACAGCAAGGACGTCCTGAGGCACC < 41bp 0.496004395296286 0.70561360989403 NA NA prediction 0.411227219788061 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931113 chr21:46931112 nonsynonymous SNV 0.699 4 20 hm7G_associated_SNPs_32490 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 29bp 29838 chr1 4771993 4771993 1 + C T STAD 4771994 + 4771974 4772014 41 GCTGGCCGGGCCGCCCCCTCGGAAGCCATGCCTGGATACTG GCTGGCCGGGCCGCCCCCTTGGAAGCCATGCCTGGATACTG < 41bp 0.519431979747077 0.725045354741851 NA NA prediction 0.411226749989548 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4771994 chr1:4771993 synonymous SNV . 0 20 hm7G_associated_SNPs_32491 0 0 0 0 1 AJAP1 chr1:4771960 3'AG 4771960 Downstream 34bp 29839 chr20 37536791 37536791 1 + C T STAD 37536792 + 37536772 37536812 41 AGCGGACCTCCACCTACAACGGGGACATCAGGGAGACCAGG AGCGGACCTCCACCTACAATGGGGACATCAGGGAGACCAGG < 41bp 0.504280550452968 0.7098926471053 NA NA prediction 0.411224193304664 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37536792 chr20:37536791 synonymous SNV . 0 20 hm7G_associated_SNPs_32492 0 0 0 0 1 PPP1R16B chr20:37536836 5'GT 37536836 Upstream 46bp 29840 chr20 44035237 44035237 1 + G A rs541042573 44035238 + 44035218 44035258 41 CCGCCTCTTCCTCGTTCCCGGCTCCCAGGGCCCGTCGGTCC CCGCCTCTTCCTCGTTCCCAGCTCCCAGGGCCCGTCGGTCC < 41bp 0.570923583993509 0.776535668045572 NA NA prediction 0.411224168104126 Functional Gain - DBNDD2 ENSG00000244274 CDS Human protein_coding chr20:44035238 chr20:44035237 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_32493 0 0 1 0 1 DBNDD2 chr20:44035250 5'GT 44035250 Upstream 14bp 29841 chr20 58322850 58322850 1 + G A SKCM 58322851 + 58322831 58322871 41 CCGGCAGGCAAGGCCGAGAGGAGCTCATCAAGAAGGGGCTG CCGGCAGGCAAGGCCGAGAAGAGCTCATCAAGAAGGGGCTG < 41bp 0.522800832265007 0.728409943012793 NA NA prediction 0.411218221495573 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58322851 chr20:58322850 synonymous SNV . 0 20 hm7G_associated_SNPs_32494 0 0 0 0 1 PHACTR3 chr20:58322813 3'AG 58322813 Downstream 38bp 29842 chr19 2994037 2994037 1 + G A SKCM 2994038 + 2994018 2994058 41 CCAGTGGTGGGCAAGCGTTGGAATGGACGACTTCCTTGGCG CCAGTGGTGGGCAAGCGTTAGAATGGACGACTTCCTTGGCG < 41bp 0.505191255247725 0.710800062627804 NA NA prediction 0.411217614760159 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994038 chr19:2994037 nonsynonymous SNV 0.034 3 20 hm7G_associated_SNPs_32495 0 0 0 0 2 TLE6 chr19:2994017 3'AG 2994017 Downstream 21bp 29843 chr19 2994037 2994037 1 + G A SKCM 2994038 + 2994018 2994058 41 CCAGTGGTGGGCAAGCGTTGGAATGGACGACTTCCTTGGCG CCAGTGGTGGGCAAGCGTTAGAATGGACGACTTCCTTGGCG < 41bp 0.505191255247725 0.710800062627804 NA NA prediction 0.411217614760159 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2994038 chr19:2994037 nonsynonymous SNV 0.034 3 20 hm7G_associated_SNPs_32495 0 0 0 0 2 TLE6 chr19:2994093 5'GT 2994093 Upstream 57bp 29844 chr22 45719209 45719209 1 + G A SARC 45719210 + 45719190 45719230 41 AGGCTGCAGAGCAGCTGGAGGTGCTGCACCCCGGAGACGTC AGGCTGCAGAGCAGCTGGAAGTGCTGCACCCCGGAGACGTC < 41bp 0.509294166152353 0.714902693150025 NA NA prediction 0.411217053995344 Functional Gain - FAM118A ENSG00000100376 CDS Human protein_coding chr22:45719210 chr22:45719209 synonymous SNV . 0 20 hm7G_associated_SNPs_32496 0 0 1 0 1 FAM118A chr22:45719308 5'GT 45719308 Upstream 100bp 29845 chr16 22161162 22161162 1 + G A HNSC 22161163 + 22161143 22161183 41 CATGGCAGGACACGCTGGTGGAGACCACAGATGCAGCGTGT CATGGCAGGACACGCTGGTAGAGACCACAGATGCAGCGTGT < 41bp 0.500231872077517 0.705839850525512 NA NA prediction 0.411215956895989 Functional Gain - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22161163 chr16:22161162 synonymous SNV . 0 20 hm7G_associated_SNPs_32497 0 0 0 0 1 VWA3A chr16:22161108 3'AG 22161108 Downstream 55bp 29846 chr19 4493979 4493979 1 + C T rs150536528 4493980 + 4493960 4494000 41 CCTCCTCCTCTTCCTGTAGCGGAGAAGCCTCTCCCGAAGCC CCTCCTCCTCTTCCTGTAGTGGAGAAGCCTCTCCCGAAGCC < 41bp 0.500862770218163 0.706469817387 NA NA prediction 0.411214094337673 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4493980 chr19:4493979 nonsynonymous SNV 0.089 0 20 hm7G_associated_SNPs_32498 0 0 1 0 2 HDGFL2 chr19:4493979 3'AG 4493979 Downstream 1bp 29847 chr19 4493979 4493979 1 + C T rs150536528 4493980 + 4493960 4494000 41 CCTCCTCCTCTTCCTGTAGCGGAGAAGCCTCTCCCGAAGCC CCTCCTCCTCTTCCTGTAGTGGAGAAGCCTCTCCCGAAGCC < 41bp 0.500862770218163 0.706469817387 NA NA prediction 0.411214094337673 Functional Gain - HDGFL2 ENSG00000167674 CDS Human protein_coding chr19:4493980 chr19:4493979 nonsynonymous SNV 0.089 0 20 hm7G_associated_SNPs_32498 0 0 1 0 2 HDGFL2 chr19:4494054 5'GT 4494054 Upstream 76bp 29848 chr18 60243764 60243764 1 + C T GBM 60243765 + 60243745 60243785 41 GCACTTACAGACTGAGATACGCACCTCCCCTCCCCCCTTCT GCACTTACAGACTGAGATATGCACCTCCCCTCCCCCCTTCT < 41bp 0.519100154524842 0.724706652856198 NA NA prediction 0.411212996662714 Functional Gain - ZCCHC2 ENSG00000141664 CDS Human protein_coding chr18:60243765 chr18:60243764 synonymous SNV . 0 20 hm7G_associated_SNPs_32499 0 0 1 0 1 ZCCHC2 chr18:60243745 3'AG 60243745 Downstream 20bp 29849 chr14 75269295 75269295 1 + C T SKCM 75269296 + 75269276 75269316 41 TTCAAAAGATGAAAGACTTCGGGTCTGAGCCACAGATGGCT TTCAAAAGATGAAAGACTTTGGGTCTGAGCCACAGATGGCT < 41bp 0.497200565665566 0.70560569393707 NA NA prediction 0.41121138787414 Functional Gain - YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75269296 chr14:75269295 synonymous SNV . 0 20 hm7G_associated_SNPs_32500 0 0 1 0 2 YLPM1 chr14:75269259 3'AG 75269259 Downstream 37bp 29850 chr14 75269295 75269295 1 + C T SKCM 75269296 + 75269276 75269316 41 TTCAAAAGATGAAAGACTTCGGGTCTGAGCCACAGATGGCT TTCAAAAGATGAAAGACTTTGGGTCTGAGCCACAGATGGCT < 41bp 0.497200565665566 0.70560569393707 NA NA prediction 0.41121138787414 Functional Gain - YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75269296 chr14:75269295 synonymous SNV . 0 20 hm7G_associated_SNPs_32500 0 0 1 0 2 YLPM1 chr14:75269379 5'GT 75269379 Upstream 85bp 29851 chr10 104181620 104181620 1 + C T COAD 104181621 + 104181601 104181641 41 CTGCAGGAGCTGGCACTGGCGCCGTGTCACGAATGGCTGTC CTGCAGGAGCTGGCACTGGTGCCGTGTCACGAATGGCTGTC < 41bp 0.510298460613143 0.715903920156953 NA NA prediction 0.41121091908762 Functional Gain - FBXL15 ENSG00000107872 CDS Human protein_coding chr10:104181621 chr10:104181620 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_32501 0 0 1 0 1 FBXL15 chr10:104181544 3'AG 104181544 Downstream 77bp 29852 chrX 7252130 7252130 1 + C T OV 7252131 + 7252111 7252151 41 CGCCTACTTAAATGCTGTGCGCTGGCACCCTCAGAACAGTG CGCCTACTTAAATGCTGTGTGCTGGCACCCTCAGAACAGTG < 41bp 0.5354396186788 0.741044237230673 NA NA prediction 0.411209237103747 Functional Gain - STS ENSG00000101846 CDS Human protein_coding chrX:7252131 chrX:7252130 nonsynonymous SNV 0.938 5 20 hm7G_associated_SNPs_32502 0 0 0 0 1 STS chrX:7252148 5'GT 7252148 Upstream 19bp 29853 chr8 57358398 57358398 1 - G A STAD 57358397 - 57358377 57358417 41 GTGCAGCTACCGCCTAGTGCGCCCGGCCGACATCAACTTCC GTGCAGCTACCGCCTAGTGTGCCCGGCCGACATCAACTTCC < 41bp 0.531575100628713 0.737179081037804 NA NA prediction 0.411207960818182 Functional Gain - PENK ENSG00000181195 CDS Human protein_coding chr8:57358397 chr8:57358398 nonsynonymous SNV 0.849 2 20 hm7G_associated_SNPs_32503 0 0 0 0 1 PENK chr8:57358375 5'GT 57358375 Upstream 24bp 29854 chr15 84566637 84566637 1 + C T COAD 84566638 + 84566618 84566658 41 GACTTGTGGCCGAGGGTTACGGTACCGGGTTGTTCTGTGTA GACTTGTGGCCGAGGGTTATGGTACCGGGTTGTTCTGTGTA < 41bp 0.495388233495079 0.705601028093542 NA NA prediction 0.411202056187083 Functional Gain - ADAMTSL3 ENSG00000156218 CDS Human protein_coding chr15:84566638 chr15:84566637 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_32504 0 0 1 0 1 ADAMTSL3 chr15:84566610 3'AG 84566610 Downstream 28bp 29855 chr6 26408109 26408109 1 + G A SKCM 26408110 + 26408090 26408130 41 ATCATGAGAGGCAGCTCTGGGGAGGGTGTATCCTGTACCAT ATCATGAGAGGCAGCTCTGAGGAGGGTGTATCCTGTACCAT < 41bp 0.497235071335323 0.705600022699593 NA NA prediction 0.411200045399186 Functional Gain - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26408110 chr6:26408109 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_32505 0 0 1 0 2 BTN3A1 chr6:26408055 3'AG 26408055 Downstream 55bp 29856 chr6 26408109 26408109 1 + G A SKCM 26408110 + 26408090 26408130 41 ATCATGAGAGGCAGCTCTGGGGAGGGTGTATCCTGTACCAT ATCATGAGAGGCAGCTCTGAGGAGGGTGTATCCTGTACCAT < 41bp 0.497235071335323 0.705600022699593 NA NA prediction 0.411200045399186 Functional Gain - BTN3A1 ENSG00000026950 CDS Human protein_coding chr6:26408110 chr6:26408109 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_32505 0 0 1 0 2 BTN3A1 chr6:26408180 5'GT 26408180 Upstream 72bp 29857 chr1 150531049 150531049 1 + C T rs587654643 150531050 + 150531030 150531070 41 GAGTGTGCGTCAGGCCCCCCGCAGCCCCCCAGCAGAGAGGC GAGTGTGCGTCAGGCCCCCTGCAGCCCCCCAGCAGAGAGGC < 41bp 0.53354042725408 0.739134427824999 NA NA prediction 0.411188001141839 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150531050 chr1:150531049 nonsynonymous SNV 0.036 0 20 hm7G_associated_SNPs_32507 0 0 1 0 1 ADAMTSL4 chr1:150531125 5'GT 150531125 Upstream 77bp 29858 chr16 30199684 30199684 1 + G A SKCM 30199685 + 30199665 30199705 41 CCTGGCCTTGCCCACAGTCGGACCTGTTCCAGGAGGACCTG CCTGGCCTTGCCCACAGTCAGACCTGTTCCAGGAGGACCTG < 41bp 0.548908852109792 0.754502300929441 NA NA prediction 0.411186897639298 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30199685 chr16:30199684 synonymous SNV . 0 20 hm7G_associated_SNPs_32508 0 0 0 0 1 CORO1A chr16:30199682 3'AG 30199682 Downstream 3bp 29859 chr5 176519354 176519354 1 + G A STAD 176519355 + 176519335 176519375 41 CCGGCCCATCCTGCAGGCCGGGCTCCCGGCCAACACCACAG CCGGCCCATCCTGCAGGCCAGGCTCCCGGCCAACACCACAG < 41bp 0.469420127143908 0.705591881105173 NA NA prediction 0.411183762210346 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519355 chr5:176519354 nonsynonymous SNV 0.969 5 20 hm7G_associated_SNPs_32509 0 0 1 0 1 FGFR4 chr5:176519322 3'AG 176519322 Downstream 33bp 29860 chr16 89920709 89920709 1 + C T SKCM 89920710 + 89920690 89920730 41 ACAGATGCTGCAGAAGCTTCGGGAGGACGAGCCGCATCTGG ACAGATGCTGCAGAAGCTTTGGGAGGACGAGCCGCATCTGG < 41bp 0.515582387919032 0.721174059238357 NA NA prediction 0.41118334263865 Functional Gain - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89920710 chr16:89920709 nonsynonymous SNV 0.218 2 20 hm7G_associated_SNPs_32510 0 0 1 0 2 SPIRE2 chr16:89920694 3'AG 89920694 Downstream 16bp 29861 chr16 89920709 89920709 1 + C T SKCM 89920710 + 89920690 89920730 41 ACAGATGCTGCAGAAGCTTCGGGAGGACGAGCCGCATCTGG ACAGATGCTGCAGAAGCTTTGGGAGGACGAGCCGCATCTGG < 41bp 0.515582387919032 0.721174059238357 NA NA prediction 0.41118334263865 Functional Gain - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89920710 chr16:89920709 nonsynonymous SNV 0.218 2 20 hm7G_associated_SNPs_32510 0 0 1 0 2 SPIRE2 chr16:89920774 5'GT 89920774 Upstream 66bp 29862 chr17 38510626 38510626 1 + C T BLCA 38510627 + 38510607 38510647 41 GGACGGGCTGACCCTGAACCGGACCCAGATGCACAACGCTG GGACGGGCTGACCCTGAACTGGACCCAGATGCACAACGCTG < 41bp 0.524740026481789 0.730329704115676 NA NA prediction 0.411179355267774 Functional Gain - RARA ENSG00000131759 CDS Human protein_coding chr17:38510627 chr17:38510626 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32511 0 0 1 0 1 RARA chr17:38510554 3'AG 38510554 Downstream 73bp 29863 chr19 7626170 7626170 1 + C T STAD 7626171 + 7626151 7626191 41 GGGATGAAGGGGGGTCCCCCGAGGGCGCAAGCCCCAGCACT GGGATGAAGGGGGGTCCCCTGAGGGCGCAAGCCCCAGCACT < 41bp 0.51284818736188 0.718436207286776 NA NA prediction 0.411176039849792 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7626171 chr19:7626170 synonymous SNV . 0 20 hm7G_associated_SNPs_32512 0 0 1 0 2 PNPLA6 chr19:7626094 3'AG 7626094 Downstream 77bp 29864 chr19 7626170 7626170 1 + C T STAD 7626171 + 7626151 7626191 41 GGGATGAAGGGGGGTCCCCCGAGGGCGCAAGCCCCAGCACT GGGATGAAGGGGGGTCCCCTGAGGGCGCAAGCCCCAGCACT < 41bp 0.51284818736188 0.718436207286776 NA NA prediction 0.411176039849792 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7626171 chr19:7626170 synonymous SNV . 0 20 hm7G_associated_SNPs_32512 0 0 1 0 2 PNPLA6 chr19:7626203 5'GT 7626203 Upstream 34bp 29865 chr17 42855596 42855596 1 + G A COAD 42855597 + 42855577 42855617 41 CCATCGTCCTGGGCGGCACGGGCTGGGGATTTAAGTAAGAG CCATCGTCCTGGGCGGCACAGGCTGGGGATTTAAGTAAGAG < 41bp 0.531901357901979 0.73748857904308 NA NA prediction 0.411174442282201 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855597 chr17:42855596 synonymous SNV . 0 20 hm7G_associated_SNPs_32513 0 0 0 0 2 ADAM11 chr17:42855520 3'AG 42855520 Downstream 77bp 29866 chr17 42855596 42855596 1 + G A COAD 42855597 + 42855577 42855617 41 CCATCGTCCTGGGCGGCACGGGCTGGGGATTTAAGTAAGAG CCATCGTCCTGGGCGGCACAGGCTGGGGATTTAAGTAAGAG < 41bp 0.531901357901979 0.73748857904308 NA NA prediction 0.411174442282201 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855597 chr17:42855596 synonymous SNV . 0 20 hm7G_associated_SNPs_32513 0 0 0 0 2 ADAM11 chr17:42855610 5'GT 42855610 Upstream 15bp 29867 chr20 61292447 61292447 1 + G A rs6011477 61292448 + 61292428 61292468 41 ACGCGGTCATGAGAGCGGCGGAAATGCACCAGTTGAAGGAC ACGCGGTCATGAGAGCGGCAGAAATGCACCAGTTGAAGGAC < 41bp 0.544909378949043 0.750495129934771 NA NA prediction 0.411171501971457 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61292448 chr20:61292447 synonymous SNV . 0 20 hm7G_associated_SNPs_32515 0 0 0 0 2 SLCO4A1 chr20:61292416 3'AG 61292416 Downstream 32bp 29868 chr20 61292447 61292447 1 + G A rs6011477 61292448 + 61292428 61292468 41 ACGCGGTCATGAGAGCGGCGGAAATGCACCAGTTGAAGGAC ACGCGGTCATGAGAGCGGCAGAAATGCACCAGTTGAAGGAC < 41bp 0.544909378949043 0.750495129934771 NA NA prediction 0.411171501971457 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61292448 chr20:61292447 synonymous SNV . 0 20 hm7G_associated_SNPs_32515 0 0 0 0 2 SLCO4A1 chr20:61292527 5'GT 61292527 Upstream 81bp 29869 chr16 31388553 31388553 1 + C T COAD 31388554 + 31388534 31388574 41 ACCTTCCAGCTGGAGCTCCCGGTGAAGTATGCTGTCTACAC ACCTTCCAGCTGGAGCTCCTGGTGAAGTATGCTGTCTACAC < 41bp 0.53822066846353 0.74380321834416 NA NA prediction 0.41116509976126 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31388554 chr16:31388553 nonsynonymous SNV 0.142 3 20 hm7G_associated_SNPs_32520 0 0 0 0 2 ITGAX chr16:31388503 3'AG 31388503 Downstream 51bp 29870 chr16 31388553 31388553 1 + C T COAD 31388554 + 31388534 31388574 41 ACCTTCCAGCTGGAGCTCCCGGTGAAGTATGCTGTCTACAC ACCTTCCAGCTGGAGCTCCTGGTGAAGTATGCTGTCTACAC < 41bp 0.53822066846353 0.74380321834416 NA NA prediction 0.41116509976126 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31388554 chr16:31388553 nonsynonymous SNV 0.142 3 20 hm7G_associated_SNPs_32520 0 0 0 0 2 ITGAX chr16:31388586 5'GT 31388586 Upstream 34bp 29871 chr11 76905514 76905514 1 + C T UCEC 76905515 + 76905495 76905535 41 ATCCCCGACCGCGAGATCACGCCCCTGAAGACGCTGGAGAA ATCCCCGACCGCGAGATCATGCCCCTGAAGACGCTGGAGAA < 41bp 0.501928227717104 0.707509088211737 NA NA prediction 0.411161720989267 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76905515 chr11:76905514 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_32521 0 0 1 0 1 MYO7A chr11:76905569 5'GT 76905569 Upstream 56bp 29872 chr2 113958774 113958774 1 + C T LUSC 113958775 + 113958755 113958795 41 CGTGCAGCTGCTGGTGGCCCGCCTGCACTGCCCCTCTGATG CGTGCAGCTGCTGGTGGCCTGCCTGCACTGCCCCTCTGATG < 41bp 0.506863239318432 0.71244150023194 NA NA prediction 0.411156521827016 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113958775 chr2:113958774 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_32523 0 0 0 0 1 PSD4 chr2:113958735 3'AG 113958735 Downstream 40bp 29873 chr13 113719371 113719371 1 + C T PRAD 113719372 + 113719352 113719392 41 ACAAGCTCAGTGCTGTGTGCGCACACAGAGAAGAAGGACAA ACAAGCTCAGTGCTGTGTGTGCACACAGAGAAGAAGGACAA < 41bp 0.540194895369404 0.745773034571384 NA NA prediction 0.41115627840396 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113719372 chr13:113719371 nonsynonymous SNV 0.118 0 20 hm7G_associated_SNPs_32524 0 0 1 0 1 MCF2L chr13:113719399 5'GT 113719399 Upstream 29bp 29874 chr5 75490762 75490762 1 + G T LUAD 75490763 + 75490743 75490783 41 GGCAGCATAGTGTACCTCGGGATGATGGTGGGGGCGTTCTT GGCAGCATAGTGTACCTCGTGATGATGGTGGGGGCGTTCTT < 41bp 0.698500492792573 0.904077870195037 NA NA prediction 0.411154754804929 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75490763 chr5:75490762 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32525 0 0 0 0 1 SV2C chr5:75490744 3'AG 75490744 Downstream 19bp 29875 chr10 122334761 122334761 1 + C T CESC 122334762 + 122334742 122334782 41 CCATCCTGCCCTTGTACTGCGCCATGATGATTGCCCTGTCC CCATCCTGCCCTTGTACTGTGCCATGATGATTGCCCTGTCC < 41bp 0.498446716005395 0.705577265529643 NA NA prediction 0.411154531059287 Functional Gain - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122334762 chr10:122334761 synonymous SNV . 0 20 hm7G_associated_SNPs_32526 0 0 0 0 1 PLPP4 chr10:122334813 5'GT 122334813 Upstream 53bp 29876 chr2 96933113 96933113 1 + G T LUAD 96933114 + 96933094 96933134 41 GGCCACCAGCGCACCGTGCGGAAGGTAGCCTGGTCCCCCTG GGCCACCAGCGCACCGTGCTGAAGGTAGCCTGGTCCCCCTG < 41bp 0.705187156566471 0.910764048173314 NA NA prediction 0.411153783213686 Functional Gain - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933114 chr2:96933113 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_32527 0 0 1 0 2 CIAO1 chr2:96933059 3'AG 96933059 Downstream 55bp 29877 chr2 96933113 96933113 1 + G T LUAD 96933114 + 96933094 96933134 41 GGCCACCAGCGCACCGTGCGGAAGGTAGCCTGGTCCCCCTG GGCCACCAGCGCACCGTGCTGAAGGTAGCCTGGTCCCCCTG < 41bp 0.705187156566471 0.910764048173314 NA NA prediction 0.411153783213686 Functional Gain - CIAO1 ENSG00000144021 CDS Human protein_coding chr2:96933114 chr2:96933113 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_32527 0 0 1 0 2 CIAO1 chr2:96933207 5'GT 96933207 Upstream 95bp 29878 chr11 57466809 57466809 1 + C T rs117135042 57466810 + 57466790 57466830 41 GCCCCATACCTGGGCCGATCGATGTCTTACAGCAGCCAAAA GCCCCATACCTGGGCCGATTGATGTCTTACAGCAGCCAAAA < 41bp 0.507690469583172 0.71326549969153 NA NA prediction 0.411150060216716 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57466810 chr11:57466809 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_32528 0 0 1 0 1 ZDHHC5 chr11:57466890 5'GT 57466890 Upstream 82bp 29879 chr17 62462563 62462563 1 + G T GBM 62462564 + 62462544 62462584 41 ATTCTCATTTTACAGAGGAGGAATCTGTGCCAGAAGTGGGA ATTCTCATTTTACAGAGGATGAATCTGTGCCAGAAGTGGGA < 41bp 0.403859139037025 0.705573926751586 NA NA prediction 0.411147853503172 Functional Gain - MILR1 ENSG00000271605 CDS Human protein_coding chr17:62462564 chr17:62462563 unknown 0.001 0 20 hm7G_associated_SNPs_32529 0 0 0 0 2 MILR1 chr17:62462559 3'AG 62462559 Downstream 5bp 29880 chr17 62462563 62462563 1 + G T GBM 62462564 + 62462544 62462584 41 ATTCTCATTTTACAGAGGAGGAATCTGTGCCAGAAGTGGGA ATTCTCATTTTACAGAGGATGAATCTGTGCCAGAAGTGGGA < 41bp 0.403859139037025 0.705573926751586 NA NA prediction 0.411147853503172 Functional Gain - MILR1 ENSG00000271605 CDS Human protein_coding chr17:62462564 chr17:62462563 unknown 0.001 0 20 hm7G_associated_SNPs_32529 0 0 0 0 2 MILR1 chr17:62462615 5'GT 62462615 Upstream 53bp 29881 chr2 95541448 95541448 1 + G A rs573432158 95541449 + 95541429 95541469 41 CTGTACCTGCGCTCGCACCGGCCCAACATGGAGCTGTGCCG CTGTACCTGCGCTCGCACCAGCCCAACATGGAGCTGTGCCG < 41bp 0.545986608620764 0.751560392838363 NA NA prediction 0.411147568435198 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95541449 chr2:95541448 nonsynonymous SNV 0.016 4 20 hm7G_associated_SNPs_32530 0 0 0 0 1 TEKT4 chr2:95541487 5'GT 95541487 Upstream 40bp 29882 chr5 148745699 148745699 1 + C T rs148427934 148745700 + 148745680 148745720 41 AGCTATGGCCAGTCAGCAGCGATGCCCGCCTTTGCAGGTAA AGCTATGGCCAGTCAGCAGTGATGCCCGCCTTTGCAGGTAA < 41bp 0.493613686101894 0.705572417868002 NA NA prediction 0.411144835736004 Functional Gain - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148745700 chr5:148745699 nonsynonymous SNV 0.795 0 20 hm7G_associated_SNPs_32532 0 0 0 0 2 PCYOX1L chr5:148745682 3'AG 148745682 Downstream 18bp 29883 chr5 148745699 148745699 1 + C T rs148427934 148745700 + 148745680 148745720 41 AGCTATGGCCAGTCAGCAGCGATGCCCGCCTTTGCAGGTAA AGCTATGGCCAGTCAGCAGTGATGCCCGCCTTTGCAGGTAA < 41bp 0.493613686101894 0.705572417868002 NA NA prediction 0.411144835736004 Functional Gain - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148745700 chr5:148745699 nonsynonymous SNV 0.795 0 20 hm7G_associated_SNPs_32532 0 0 0 0 2 PCYOX1L chr5:148745716 5'GT 148745716 Upstream 18bp 29884 chr3 179082163 179082163 1 + C T COAD 179082164 + 179082144 179082184 41 CTGATGTCTTTGTTTTGGTCGCAAACTCTGAATCAACACTA CTGATGTCTTTGTTTTGGTTGCAAACTCTGAATCAACACTA < 41bp 0.498525869861451 0.705570787339588 NA NA prediction 0.411141574679176 Functional Gain - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082164 chr3:179082163 synonymous SNV . 0 20 hm7G_associated_SNPs_32534 0 0 1 1 2 MFN1 chr3:179082085 3'AG 179082085 Downstream 79bp 29885 chr3 179082163 179082163 1 + C T COAD 179082164 + 179082144 179082184 41 CTGATGTCTTTGTTTTGGTCGCAAACTCTGAATCAACACTA CTGATGTCTTTGTTTTGGTTGCAAACTCTGAATCAACACTA < 41bp 0.498525869861451 0.705570787339588 NA NA prediction 0.411141574679176 Functional Gain - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179082164 chr3:179082163 synonymous SNV . 0 20 hm7G_associated_SNPs_32534 0 0 1 1 2 MFN1 chr3:179082193 5'GT 179082193 Upstream 31bp 29886 chr11 12263947 12263947 1 + C T BRCA 12263948 + 12263928 12263968 41 TCTTTCCGGGGTGCTGTGGCGGCTGCAGCAAGTGGAGGAAA TCTTTCCGGGGTGCTGTGGTGGCTGCAGCAAGTGGAGGAAA < 41bp 0.497064242652082 0.705569963959763 NA NA prediction 0.411139927919525 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12263948 chr11:12263947 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_32535 0 0 0 0 1 MICAL2 chr11:12263979 5'GT 12263979 Upstream 33bp 29887 chr16 57756953 57756953 1 + G T LIHC 57756954 + 57756934 57756974 41 AAGGAGTGGTACCAGAACCGGGAAGACATGCTGGAGCTGAA AAGGAGTGGTACCAGAACCTGGAAGACATGCTGGAGCTGAA < 41bp 0.702261832000647 0.907828919973164 NA NA prediction 0.411134175945033 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57756954 chr16:57756953 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32537 0 0 0 0 2 DRC7 chr16:57756914 3'AG 57756914 Downstream 40bp 29888 chr16 57756953 57756953 1 + G T LIHC 57756954 + 57756934 57756974 41 AAGGAGTGGTACCAGAACCGGGAAGACATGCTGGAGCTGAA AAGGAGTGGTACCAGAACCTGGAAGACATGCTGGAGCTGAA < 41bp 0.702261832000647 0.907828919973164 NA NA prediction 0.411134175945033 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57756954 chr16:57756953 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32537 0 0 0 0 2 DRC7 chr16:57757042 5'GT 57757042 Upstream 90bp 29889 chr20 57287587 57287587 1 + G T UCEC 57287588 + 57287568 57287608 41 TTGGCTGAGAACTCGGTGGGGCCCAATGCGACAAGGCCAGA TTGGCTGAGAACTCGGTGGTGCCCAATGCGACAAGGCCAGA < 41bp 0.700160987167931 0.905727559222427 NA NA prediction 0.411133144108992 Functional Gain - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57287588 chr20:57287587 nonsynonymous SNV 0.014 4 20 hm7G_associated_SNPs_32538 0 0 1 0 1 NPEPL1 chr20:57287635 5'GT 57287635 Upstream 49bp 29890 chr6 109283308 109283308 1 + C T rs116563207 109283309 + 109283289 109283329 41 CCCAGGACCATGATGTCTGCGATTTCATTGTGCAGAACAAT CCCAGGACCATGATGTCTGTGATTTCATTGTGCAGAACAAT < 41bp 0.498210784968286 0.705565512566779 NA NA prediction 0.411131025133557 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109283309 chr6:109283308 synonymous SNV . 0 20 hm7G_associated_SNPs_32539 0 0 0 0 2 ARMC2 chr6:109283217 3'AG 109283217 Downstream 92bp 29891 chr6 109283308 109283308 1 + C T rs116563207 109283309 + 109283289 109283329 41 CCCAGGACCATGATGTCTGCGATTTCATTGTGCAGAACAAT CCCAGGACCATGATGTCTGTGATTTCATTGTGCAGAACAAT < 41bp 0.498210784968286 0.705565512566779 NA NA prediction 0.411131025133557 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109283309 chr6:109283308 synonymous SNV . 0 20 hm7G_associated_SNPs_32539 0 0 0 0 2 ARMC2 chr6:109283330 5'GT 109283330 Upstream 23bp 29892 chr3 154802023 154802023 1 + C T HNSC 154802024 + 154802004 154802044 41 AAAGCCAAAGAAGAAACAGCGATGGACTCCACTGGAGATCA AAAGCCAAAGAAGAAACAGTGATGGACTCCACTGGAGATCA < 41bp 0.516446040902855 0.722011515723395 NA NA prediction 0.41113094964108 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154802024 chr3:154802023 stopgain 0.982 1 20 hm7G_associated_SNPs_32540 0 0 0 0 2 MME chr3:154801947 3'AG 154801947 Downstream 77bp 29893 chr3 154802023 154802023 1 + C T HNSC 154802024 + 154802004 154802044 41 AAAGCCAAAGAAGAAACAGCGATGGACTCCACTGGAGATCA AAAGCCAAAGAAGAAACAGTGATGGACTCCACTGGAGATCA < 41bp 0.516446040902855 0.722011515723395 NA NA prediction 0.41113094964108 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154802024 chr3:154802023 stopgain 0.982 1 20 hm7G_associated_SNPs_32540 0 0 0 0 2 MME chr3:154802116 5'GT 154802116 Upstream 94bp 29894 chr11 293873 293873 1 + G A rs141897148 293874 + 293854 293894 41 GAGCTGAAGGACGCAGTGCGGGCCCGGGGCCTCCTGGACAG GAGCTGAAGGACGCAGTGCAGGCCCGGGGCCTCCTGGACAG < 41bp 0.567276654945398 0.772840842209509 NA NA prediction 0.411128374528221 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:293874 chr11:293873 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_32541 0 0 1 0 2 PGGHG chr11:293830 3'AG 293830 Downstream 44bp 29895 chr11 293873 293873 1 + G A rs141897148 293874 + 293854 293894 41 GAGCTGAAGGACGCAGTGCGGGCCCGGGGCCTCCTGGACAG GAGCTGAAGGACGCAGTGCAGGCCCGGGGCCTCCTGGACAG < 41bp 0.567276654945398 0.772840842209509 NA NA prediction 0.411128374528221 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:293874 chr11:293873 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_32541 0 0 1 0 2 PGGHG chr11:293925 5'GT 293925 Upstream 53bp 29896 chr22 51182575 51182575 1 + C T LGG 51182576 + 51182556 51182596 41 GACCCAGTGGTACAATGGGCGCGTTCAGCCAACCAATGTGT GACCCAGTGGTACAATGGGTGCGTTCAGCCAACCAATGTGT < 41bp 0.509341500859498 0.714903837893842 NA NA prediction 0.411124674068688 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51182576 chr22:51182575 nonsynonymous SNV 0.773 1 20 hm7G_associated_SNPs_32542 0 0 0 0 2 ACR chr22:51182489 3'AG 51182489 Downstream 87bp 29897 chr22 51182575 51182575 1 + C T LGG 51182576 + 51182556 51182596 41 GACCCAGTGGTACAATGGGCGCGTTCAGCCAACCAATGTGT GACCCAGTGGTACAATGGGTGCGTTCAGCCAACCAATGTGT < 41bp 0.509341500859498 0.714903837893842 NA NA prediction 0.411124674068688 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51182576 chr22:51182575 nonsynonymous SNV 0.773 1 20 hm7G_associated_SNPs_32542 0 0 0 0 2 ACR chr22:51182634 5'GT 51182634 Upstream 60bp 29898 chr19 2989114 2989114 1 + G A STAD 2989115 + 2989095 2989135 41 GAGGCCAGATGCCTTGCCCGGGCAGTCAAAGAGACTCGCCG GAGGCCAGATGCCTTGCCCAGGCAGTCAAAGAGACTCGCCG < 41bp 0.474834069685459 0.705561498618327 NA NA prediction 0.411122997236653 Functional Gain - TLE6 ENSG00000104953 CDS Human protein_coding chr19:2989115 chr19:2989114 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_32544 0 0 0 0 1 TLE6 chr19:2989059 3'AG 2989059 Downstream 56bp 29899 chr19 41305138 41305138 1 + G T rs184088518 41305139 + 41305119 41305159 41 CAGGGCGGCTGGCACAAACGGCGGCGCCGGGGCCGGAGGAA CAGGGCGGCTGGCACAAACTGCGGCGCCGGGGCCGGAGGAA < 41bp 0.38256922167589 0.70556074957519 NA NA prediction 0.41112149915038 Functional Gain - RAB4B-EGLN2 ENSG00000269858 UTR5 Human protein_coding chr19:41305139 chr19:41305138 . . 0 20 hm7G_associated_SNPs_32546 0 1 1 0 1 RAB4B-EGLN2 chr19:41305167 5'GT 41305167 Upstream 30bp 29900 chr1 234452425 234452425 1 + C T UCEC 234452426 + 234452406 234452446 41 TCCACAGCCACTCCGTCATCGGCATCGCACTGGTGGTGGCC TCCACAGCCACTCCGTCATTGGCATCGCACTGGTGGTGGCC < 41bp 0.518561187014282 0.724121757631596 NA NA prediction 0.411121141234629 Functional Gain - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234452426 chr1:234452425 synonymous SNV . 0 20 hm7G_associated_SNPs_32547 0 0 0 0 2 SLC35F3 chr1:234452348 3'AG 234452348 Downstream 78bp 29901 chr1 234452425 234452425 1 + C T UCEC 234452426 + 234452406 234452446 41 TCCACAGCCACTCCGTCATCGGCATCGCACTGGTGGTGGCC TCCACAGCCACTCCGTCATTGGCATCGCACTGGTGGTGGCC < 41bp 0.518561187014282 0.724121757631596 NA NA prediction 0.411121141234629 Functional Gain - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234452426 chr1:234452425 synonymous SNV . 0 20 hm7G_associated_SNPs_32547 0 0 0 0 2 SLC35F3 chr1:234452473 5'GT 234452473 Upstream 49bp 29902 chr6 90333173 90333173 1 + G A LUAD 90333174 + 90333154 90333194 41 CCAGCAGTGAACAGGCTGTGGCCAGAAAAGAAGAAGCCAGA CCAGCAGTGAACAGGCTGTAGCCAGAAAAGAAGAAGCCAGA < 41bp 0.532764119730864 0.738323561837001 NA NA prediction 0.411118884212275 Functional Gain - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90333174 chr6:90333173 synonymous SNV . 0 20 hm7G_associated_SNPs_32549 0 0 0 0 2 ANKRD6 chr6:90333129 3'AG 90333129 Downstream 45bp 29903 chr6 90333173 90333173 1 + G A LUAD 90333174 + 90333154 90333194 41 CCAGCAGTGAACAGGCTGTGGCCAGAAAAGAAGAAGCCAGA CCAGCAGTGAACAGGCTGTAGCCAGAAAAGAAGAAGCCAGA < 41bp 0.532764119730864 0.738323561837001 NA NA prediction 0.411118884212275 Functional Gain - ANKRD6 ENSG00000135299 CDS Human protein_coding chr6:90333174 chr6:90333173 synonymous SNV . 0 20 hm7G_associated_SNPs_32549 0 0 0 0 2 ANKRD6 chr6:90333263 5'GT 90333263 Upstream 91bp 29904 chr9 132641901 132641901 1 + C T UCEC 132641902 + 132641882 132641922 41 TTGCACAGGTCAAAGGAAGCGGCCATGTCCAGCTGAAGCAG TTGCACAGGTCAAAGGAAGTGGCCATGTCCAGCTGAAGCAG < 41bp 0.513735703737937 0.719291799843908 NA NA prediction 0.411112192211941 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132641902 chr9:132641901 synonymous SNV . 0 20 hm7G_associated_SNPs_32550 0 0 1 0 1 USP20 chr9:132641852 3'AG 132641852 Downstream 50bp 29905 chr11 61106642 61106642 1 + G A BLCA 61106643 + 61106623 61106663 41 CAGGGCCGTGGCCCAGGCCGGCACAGGTAAGCCTGGCATGC CAGGGCCGTGGCCCAGGCCAGCACAGGTAAGCCTGGCATGC < 41bp 0.572655489839329 0.778211385474255 NA NA prediction 0.411111791269852 Functional Gain - TKFC ENSG00000149476 CDS Human protein_coding chr11:61106643 chr11:61106642 nonsynonymous SNV 0.829 2 20 hm7G_associated_SNPs_32551 0 0 1 0 1 TKFC chr11:61106648 5'GT 61106648 Upstream 7bp 29906 chr3 42261076 42261076 1 + G A rs149186690 42261077 + 42261057 42261097 41 CCTTCAGATGAGCTCACTCGGGTCACACCAAGGTAAGGGAC CCTTCAGATGAGCTCACTCAGGTCACACCAAGGTAAGGGAC < 41bp 0.508226080453255 0.713780797448712 NA NA prediction 0.411109433990913 Functional Gain - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42261077 chr3:42261076 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32552 0 0 1 0 2 TRAK1 chr3:42260986 3'AG 42260986 Downstream 91bp 29907 chr3 42261076 42261076 1 + G A rs149186690 42261077 + 42261057 42261097 41 CCTTCAGATGAGCTCACTCGGGTCACACCAAGGTAAGGGAC CCTTCAGATGAGCTCACTCAGGTCACACCAAGGTAAGGGAC < 41bp 0.508226080453255 0.713780797448712 NA NA prediction 0.411109433990913 Functional Gain - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42261077 chr3:42261076 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32552 0 0 1 0 2 TRAK1 chr3:42261088 5'GT 42261088 Upstream 13bp 29908 chr19 47878896 47878896 1 + C T rs371324030 47878897 + 47878877 47878917 41 GGCTGCAGGAGGAGCAGGACGGCGGCTCCAGTGACGAGGAC GGCTGCAGGAGGAGCAGGATGGCGGCTCCAGTGACGAGGAC < 41bp 0.527103773230539 0.732651091124491 NA NA prediction 0.411094635787905 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47878897 chr19:47878896 synonymous SNV . 0 20 hm7G_associated_SNPs_32555 0 0 1 0 1 DHX34 chr19:47878965 5'GT 47878965 Upstream 70bp 29909 chr11 76826613 76826613 1 + G A LUAD 76826614 + 76826594 76826634 41 CCCTGGGGCGAGCGGGAGTGGAACGGGCCCTGGAGTGACAC CCCTGGGGCGAGCGGGAGTAGAACGGGCCCTGGAGTGACAC < 41bp 0.551418521309643 0.756960042352327 NA NA prediction 0.411083042085368 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76826614 chr11:76826613 stopgain 0.999 1 20 hm7G_associated_SNPs_32560 0 0 0 0 1 CAPN5 chr11:76826634 5'GT 76826634 Upstream 22bp 29910 chr6 43171266 43171266 1 + C T UCEC 43171267 + 43171247 43171287 41 ATGTCTCTTCTACACAATTCGGGCACAAGCCTGGAGCCGGG ATGTCTCTTCTACACAATTTGGGCACAAGCCTGGAGCCGGG < 41bp 0.540078945106917 0.745619154552182 NA NA prediction 0.41108041889053 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43171267 chr6:43171266 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_32562 0 0 0 0 1 CUL9 chr6:43171330 5'GT 43171330 Upstream 65bp 29911 chr16 85948095 85948095 1 + G A STAD 85948096 + 85948076 85948116 41 CAGGCGTGCCGCTGGTGACGGGGTACACCACCTACGACGCG CAGGCGTGCCGCTGGTGACAGGGTACACCACCTACGACGCG < 41bp 0.527141391255606 0.732677186556182 NA NA prediction 0.411071590601152 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85948096 chr16:85948095 synonymous SNV . 0 20 hm7G_associated_SNPs_32563 0 0 0 0 2 IRF8 chr16:85948079 3'AG 85948079 Downstream 17bp 29912 chr16 85948095 85948095 1 + G A STAD 85948096 + 85948076 85948116 41 CAGGCGTGCCGCTGGTGACGGGGTACACCACCTACGACGCG CAGGCGTGCCGCTGGTGACAGGGTACACCACCTACGACGCG < 41bp 0.527141391255606 0.732677186556182 NA NA prediction 0.411071590601152 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85948096 chr16:85948095 synonymous SNV . 0 20 hm7G_associated_SNPs_32563 0 0 0 0 2 IRF8 chr16:85948126 5'GT 85948126 Upstream 32bp 29913 chr7 100160511 100160511 1 + C T rs146824330 100160512 + 100160492 100160532 41 CTAACCCTTTCACAGCTCCCGCCGCCCAGTCCCCGCTGCCT CTAACCCTTTCACAGCTCCTGCCGCCCAGTCCCCGCTGCCT < 41bp 0.521522542232962 0.727055555930648 NA NA prediction 0.411066027395373 Functional Gain - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100160512 chr7:100160511 synonymous SNV . 0 20 hm7G_associated_SNPs_32565 0 0 0 0 2 AGFG2 chr7:100160486 3'AG 100160486 Downstream 26bp 29914 chr7 100160511 100160511 1 + C T rs146824330 100160512 + 100160492 100160532 41 CTAACCCTTTCACAGCTCCCGCCGCCCAGTCCCCGCTGCCT CTAACCCTTTCACAGCTCCTGCCGCCCAGTCCCCGCTGCCT < 41bp 0.521522542232962 0.727055555930648 NA NA prediction 0.411066027395373 Functional Gain - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100160512 chr7:100160511 synonymous SNV . 0 20 hm7G_associated_SNPs_32565 0 0 0 0 2 AGFG2 chr7:100160569 5'GT 100160569 Upstream 59bp 29915 chr1 158151871 158151871 1 + C T ESCA 158151872 + 158151852 158151892 41 GTGAGGTGCACCCTGGGAACGCCTCAAATAACTTCTTCCAT GTGAGGTGCACCCTGGGAATGCCTCAAATAACTTCTTCCAT < 41bp 0.519357250449873 0.724889710907832 NA NA prediction 0.411064920915917 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151872 chr1:158151871 synonymous SNV . 0 20 hm7G_associated_SNPs_32567 0 0 0 0 1 CD1D chr1:158151822 3'AG 158151822 Downstream 50bp 29916 chr15 29393975 29393975 1 + C T ACC 29393976 + 29393956 29393996 41 AGATGATCTGCCATGTGTTCGAGTCGGAGGATGTAAGTAAG AGATGATCTGCCATGTGTTTGAGTCGGAGGATGTAAGTAAG < 41bp 0.517011385926999 0.722542724333114 NA NA prediction 0.411062676812231 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29393976 chr15:29393975 synonymous SNV . 0 20 hm7G_associated_SNPs_32568 0 0 1 0 1 APBA2 chr15:29393987 5'GT 29393987 Upstream 13bp 29917 chr2 37032639 37032639 1 + C T rs147276376 37032640 + 37032620 37032660 41 AAGCCAATGGAAACAGAAGCGGGGCTCCCAATGTGGTGGTG AAGCCAATGGAAACAGAAGTGGGGCTCCCAATGTGGTGGTG < 41bp 0.54097366180796 0.746504172556355 NA NA prediction 0.411061021496791 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:37032640 chr2:37032639 synonymous SNV . 0 20 hm7G_associated_SNPs_32571 0 0 0 0 1 VIT chr2:37032581 3'AG 37032581 Downstream 59bp 29918 chr20 62697851 62697851 1 + G A UCEC 62697852 + 62697832 62697872 41 GGAGCCATGGATTTGCTGCGGGAGCTGAAGGCCATGCCTAT GGAGCCATGGATTTGCTGCAGGAGCTGAAGGCCATGCCTAT < 41bp 0.541439098615692 0.746969433502183 NA NA prediction 0.411060669772982 Functional Gain - TCEA2 ENSG00000171703 CDS Human protein_coding chr20:62697852 chr20:62697851 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_32572 0 0 1 0 1 TCEA2 chr20:62697891 5'GT 62697891 Upstream 41bp 29919 chr2 120385258 120385258 1 + C T UCEC 120385259 + 120385239 120385279 41 CTTCAAATTCTTCCTGAGGCGGATCAGTCAGGATGATTATA CTTCAAATTCTTCCTGAGGTGGATCAGTCAGGATGATTATA < 41bp 0.501841951754825 0.707370621131667 NA NA prediction 0.411057338753684 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120385259 chr2:120385258 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_32574 0 0 0 0 1 CFAP221 chr2:120385229 3'AG 120385229 Downstream 30bp 29920 chr10 88447000 88447000 1 + G A rs537783577 88447001 + 88446981 88447021 41 TGGATGCCATCGCTGGGCAGGCCCAAGCCCAAGGCAGTGAC TGGATGCCATCGCTGGGCAAGCCCAAGCCCAAGGCAGTGAC < 41bp 0.513932369572925 0.71945736611807 NA NA prediction 0.41104999309029 Functional Gain - LDB3 ENSG00000122367 CDS Human protein_coding chr10:88447001 chr10:88447000 synonymous SNV . 0 20 hm7G_associated_SNPs_32577 0 0 0 0 1 LDB3 chr10:88447029 5'GT 88447029 Upstream 30bp 29921 chr11 65734003 65734003 1 + C T COAD 65734004 + 65733984 65734024 41 TGGGGCCCCGGCTGGCCTCCGAATACCTCACGCCTGAGGAG TGGGGCCCCGGCTGGCCTCTGAATACCTCACGCCTGAGGAG < 41bp 0.515774727618784 0.721299617802478 NA NA prediction 0.411049780367387 Functional Gain - SART1 ENSG00000175467 CDS Human protein_coding chr11:65734004 chr11:65734003 synonymous SNV . 0 20 hm7G_associated_SNPs_32578 0 0 1 2 1 SART1 chr11:65734027 5'GT 65734027 Upstream 25bp 29922 chr11 64883004 64883004 1 + G A UCEC 64883005 + 64882985 64883025 41 GCTGGTGTCTGGGTGGTGGGGTATGGTCCGCCATCCCAACT GCTGGTGTCTGGGTGGTGGAGTATGGTCCGCCATCCCAACT < 41bp 0.523562137738233 0.729086420597977 NA NA prediction 0.411048565719488 Functional Gain - TM7SF2 ENSG00000149809 CDS Human protein_coding chr11:64883005 chr11:64883004 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_32579 0 0 1 0 2 TM7SF2 chr11:64882948 3'AG 64882948 Downstream 57bp 29923 chr11 64883004 64883004 1 + G A UCEC 64883005 + 64882985 64883025 41 GCTGGTGTCTGGGTGGTGGGGTATGGTCCGCCATCCCAACT GCTGGTGTCTGGGTGGTGGAGTATGGTCCGCCATCCCAACT < 41bp 0.523562137738233 0.729086420597977 NA NA prediction 0.411048565719488 Functional Gain - TM7SF2 ENSG00000149809 CDS Human protein_coding chr11:64883005 chr11:64883004 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_32579 0 0 1 0 2 TM7SF2 chr11:64883070 5'GT 64883070 Upstream 67bp 29924 chr10 73082782 73082782 1 + G A COAD 73082783 + 73082763 73082803 41 CTCCTCCAGCCCAGCCACCGGGGAGGACCCTGAGGGCTCAG CTCCTCCAGCCCAGCCACCAGGGAGGACCCTGAGGGCTCAG < 41bp 0.558024821471531 0.763545281248501 NA NA prediction 0.41104091955394 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73082783 chr10:73082782 nonsynonymous SNV 0.113 0 20 hm7G_associated_SNPs_32581 0 0 1 0 1 SLC29A3 chr10:73082811 5'GT 73082811 Upstream 30bp 29925 chr10 118215324 118215324 1 + G T UCEC 118215325 + 118215305 118215345 41 AGCTGGGTCAAGGATACCAGGCCTTGGAAGAATAACTGGTA AGCTGGGTCAAGGATACCATGCCTTGGAAGAATAACTGGTA < 41bp 0.700420842281542 0.905937759135771 NA NA prediction 0.411033833708459 Functional Gain - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215325 chr10:118215324 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_32584 0 0 0 0 2 PNLIPRP3 chr10:118215234 3'AG 118215234 Downstream 91bp 29926 chr10 118215324 118215324 1 + G T UCEC 118215325 + 118215305 118215345 41 AGCTGGGTCAAGGATACCAGGCCTTGGAAGAATAACTGGTA AGCTGGGTCAAGGATACCATGCCTTGGAAGAATAACTGGTA < 41bp 0.700420842281542 0.905937759135771 NA NA prediction 0.411033833708459 Functional Gain - PNLIPRP3 ENSG00000203837 CDS Human protein_coding chr10:118215325 chr10:118215324 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_32584 0 0 0 0 2 PNLIPRP3 chr10:118215342 5'GT 118215342 Upstream 19bp 29927 chr9 131553936 131553936 1 + G T LUSC 131553937 + 131553917 131553957 41 GCATTGCCAAGGCCAACATGGGTGTGTCCAGGGAGGATGTG GCATTGCCAAGGCCAACATTGGTGTGTCCAGGGAGGATGTG < 41bp 0.714658261564716 0.920173409294511 NA NA prediction 0.411030295459588 Functional Gain - TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131553937 chr9:131553936 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_32586 0 0 1 0 2 TBC1D13 chr9:131553873 3'AG 131553873 Downstream 64bp 29928 chr9 131553936 131553936 1 + G T LUSC 131553937 + 131553917 131553957 41 GCATTGCCAAGGCCAACATGGGTGTGTCCAGGGAGGATGTG GCATTGCCAAGGCCAACATTGGTGTGTCCAGGGAGGATGTG < 41bp 0.714658261564716 0.920173409294511 NA NA prediction 0.411030295459588 Functional Gain - TBC1D13 ENSG00000107021 CDS Human protein_coding chr9:131553937 chr9:131553936 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_32586 0 0 1 0 2 TBC1D13 chr9:131553972 5'GT 131553972 Upstream 37bp 29929 chr17 44827207 44827207 1 + C T STAD 44827208 + 44827188 44827228 41 AGGAGATGGAAATGCTTAACGCTTTCAGCACCACCATCCAC AGGAGATGGAAATGCTTAATGCTTTCAGCACCACCATCCAC < 41bp 0.49233727600224 0.705511777836629 NA NA prediction 0.411023555673258 Functional Gain - NSF ENSG00000073969 CDS Human protein_coding chr17:44827208 chr17:44827207 synonymous SNV . 0 20 hm7G_associated_SNPs_32589 0 0 1 0 2 NSF chr17:44827139 3'AG 44827139 Downstream 69bp 29930 chr17 44827207 44827207 1 + C T STAD 44827208 + 44827188 44827228 41 AGGAGATGGAAATGCTTAACGCTTTCAGCACCACCATCCAC AGGAGATGGAAATGCTTAATGCTTTCAGCACCACCATCCAC < 41bp 0.49233727600224 0.705511777836629 NA NA prediction 0.411023555673258 Functional Gain - NSF ENSG00000073969 CDS Human protein_coding chr17:44827208 chr17:44827207 synonymous SNV . 0 20 hm7G_associated_SNPs_32589 0 0 1 0 2 NSF chr17:44827273 5'GT 44827273 Upstream 67bp 29931 chr1 11579853 11579853 1 + C T BLCA 11579854 + 11579834 11579874 41 AGCCTCCAACACGGGCAGCCGCGGCCATCTCATCGTGCAGC AGCCTCCAACACGGGCAGCTGCGGCCATCTCATCGTGCAGC < 41bp 0.493563198048609 0.705509160529763 NA NA prediction 0.411018321059525 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579854 chr1:11579853 nonsynonymous SNV 0.800 4 20 hm7G_associated_SNPs_32592 0 0 0 0 1 DISP3 chr1:11579937 5'GT 11579937 Upstream 85bp 29932 chr6 398916 398916 1 + C T STAD 398917 + 398897 398937 41 AGCCAAGCATAAGGTCTGCCGAAGCCTTGGCGTTCTCAGGT AGCCAAGCATAAGGTCTGCTGAAGCCTTGGCGTTCTCAGGT < 41bp 0.513803416647791 0.7193116432379 NA NA prediction 0.41101645318022 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:398917 chr6:398916 synonymous SNV . 0 20 hm7G_associated_SNPs_32594 0 0 0 0 2 IRF4 chr6:398828 3'AG 398828 Downstream 89bp 29933 chr6 398916 398916 1 + C T STAD 398917 + 398897 398937 41 AGCCAAGCATAAGGTCTGCCGAAGCCTTGGCGTTCTCAGGT AGCCAAGCATAAGGTCTGCTGAAGCCTTGGCGTTCTCAGGT < 41bp 0.513803416647791 0.7193116432379 NA NA prediction 0.41101645318022 Functional Gain - IRF4 ENSG00000137265 CDS Human protein_coding chr6:398917 chr6:398916 synonymous SNV . 0 20 hm7G_associated_SNPs_32594 0 0 0 0 2 IRF4 chr6:398935 5'GT 398935 Upstream 20bp 29934 chr11 68685249 68685249 1 + C T UCEC 68685250 + 68685230 68685270 41 GAGAGAGAAAAGTAATTTTCGAAATGAAATTAAGCTGTTAA GAGAGAGAAAAGTAATTTTTGAAATGAAATTAAGCTGTTAA < 41bp 0.496958902644701 0.705507579767525 NA NA prediction 0.411015159535051 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68685250 chr11:68685249 stopgain 0.974 0 20 hm7G_associated_SNPs_32595 5 0 1 2 1 IGHMBP2 chr11:68685204 3'AG 68685204 Downstream 46bp 29935 chr2 234183326 234183326 1 + C T UCEC 234183327 + 234183307 234183347 41 TATGTTATTTCTTAGGAGACGCTCTGTCTCTTCCTTCCCAG TATGTTATTTCTTAGGAGATGCTCTGTCTCTTCCTTCCCAG < 41bp 0.523800188650298 0.729306224382771 NA NA prediction 0.411012071464946 Functional Gain - ATG16L1 ENSG00000085978 CDS Human protein_coding chr2:234183327 chr2:234183326 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32596 0 0 1 0 2 ATG16L1 chr2:234183322 3'AG 234183322 Downstream 5bp 29936 chr2 234183326 234183326 1 + C T UCEC 234183327 + 234183307 234183347 41 TATGTTATTTCTTAGGAGACGCTCTGTCTCTTCCTTCCCAG TATGTTATTTCTTAGGAGATGCTCTGTCTCTTCCTTCCCAG < 41bp 0.523800188650298 0.729306224382771 NA NA prediction 0.411012071464946 Functional Gain - ATG16L1 ENSG00000085978 CDS Human protein_coding chr2:234183327 chr2:234183326 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32596 0 0 1 0 2 ATG16L1 chr2:234183424 5'GT 234183424 Upstream 99bp 29937 chr1 168013867 168013867 1 + G T COAD 168013868 + 168013848 168013888 41 TGTGACAAAATATCAGGAAGGAGTATCTGCAGAAAACCCAG TGTGACAAAATATCAGGAATGAGTATCTGCAGAAAACCCAG < 41bp 0.371451676115503 0.70550504880379 NA NA prediction 0.41101009760758 Functional Gain - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168013868 chr1:168013867 stopgain 0.642 0 20 hm7G_associated_SNPs_32598 0 0 1 0 2 DCAF6 chr1:168013823 3'AG 168013823 Downstream 45bp 29938 chr1 168013867 168013867 1 + G T COAD 168013868 + 168013848 168013888 41 TGTGACAAAATATCAGGAAGGAGTATCTGCAGAAAACCCAG TGTGACAAAATATCAGGAATGAGTATCTGCAGAAAACCCAG < 41bp 0.371451676115503 0.70550504880379 NA NA prediction 0.41101009760758 Functional Gain - DCAF6 ENSG00000143164 CDS Human protein_coding chr1:168013868 chr1:168013867 stopgain 0.642 0 20 hm7G_associated_SNPs_32598 0 0 1 0 2 DCAF6 chr1:168013909 5'GT 168013909 Upstream 43bp 29939 chr19 35551649 35551649 1 + C T GBM 35551650 + 35551630 35551670 41 CGGGGGCTATCTTCCCTTTCGGGACCCCAACAGCGAGGAGA CGGGGGCTATCTTCCCTTTTGGGACCCCAACAGCGAGGAGA < 41bp 0.549571822028254 0.755076230936332 NA NA prediction 0.411008817816156 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35551650 chr19:35551649 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_32601 0 0 0 0 1 HPN chr19:35551721 5'GT 35551721 Upstream 73bp 29940 chr2 242812010 242812010 1 + G A SKCM 242812011 + 242811991 242812031 41 TGCTACCTGAGCACAGCCTGGTCCCGGGATGCCTGGACGGC TGCTACCTGAGCACAGCCTAGTCCCGGGATGCCTGGACGGC < 41bp 0.575711603898186 0.78121522824779 NA NA prediction 0.411007248699208 Functional Gain - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242812011 chr2:242812010 synonymous SNV . 0 20 hm7G_associated_SNPs_32602 0 0 0 0 1 RTP5 chr2:242812066 5'GT 242812066 Upstream 57bp 29941 chrX 99917286 99917286 1 + C T UCEC 99917287 + 99917267 99917307 41 TTGTGAGCTCTCCTGTGACCGGGGCTTTCGATTGATTGGAA TTGTGAGCTCTCCTGTGACTGGGGCTTTCGATTGATTGGAA < 41bp 0.545437550704795 0.750940576876741 NA NA prediction 0.411006052343893 Functional Gain - SRPX2 ENSG00000102359 CDS Human protein_coding chrX:99917287 chrX:99917286 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_32604 1 0 0 0 1 SRPX2 chrX:99917364 5'GT 99917364 Upstream 79bp 29942 chr8 30982472 30982472 1 + G T SARC 30982473 + 30982453 30982493 41 AAGTACAAAAAGCCTCCTTGGGAATTATGGGAACTGAAAAA AAGTACAAAAAGCCTCCTTTGGAATTATGGGAACTGAAAAA < 41bp 0.359003530202919 0.705501892303346 NA NA prediction 0.411003784606691 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:30982473 chr8:30982472 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_32605 0 0 1 0 2 WRN chr8:30982424 3'AG 30982424 Downstream 49bp 29943 chr8 30982472 30982472 1 + G T SARC 30982473 + 30982453 30982493 41 AAGTACAAAAAGCCTCCTTGGGAATTATGGGAACTGAAAAA AAGTACAAAAAGCCTCCTTTGGAATTATGGGAACTGAAAAA < 41bp 0.359003530202919 0.705501892303346 NA NA prediction 0.411003784606691 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:30982473 chr8:30982472 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_32605 0 0 1 0 2 WRN chr8:30982516 5'GT 30982516 Upstream 45bp 29944 chr5 80548680 80548680 1 + G T STAD 80548681 + 80548661 80548701 41 CCCCTTCATAAAGACTGTGGGCATGGTGGCTGGTGACGAGG CCCCTTCATAAAGACTGTGTGCATGGTGGCTGGTGACGAGG < 41bp 0.690981501184702 0.896481353552201 NA NA prediction 0.410999704734997 Functional Gain - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80548681 chr5:80548680 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_32606 0 0 0 0 1 CKMT2 chr5:80548712 5'GT 80548712 Upstream 33bp 29945 chr16 23700904 23700904 1 + C T UCEC 23700905 + 23700885 23700925 41 CGCGCGAAGGTGATGAGCTCGCCCGGCTGCCCTACCTACGG CGCGCGAAGGTGATGAGCTTGCCCGGCTGCCCTACCTACGG < 41bp 0.511258543596552 0.716758131983824 NA NA prediction 0.410999176774544 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700905 chr16:23700904 synonymous SNV . 0 20 hm7G_associated_SNPs_32608 0 0 1 0 2 PLK1 chr16:23700815 3'AG 23700815 Downstream 90bp 29946 chr16 23700904 23700904 1 + C T UCEC 23700905 + 23700885 23700925 41 CGCGCGAAGGTGATGAGCTCGCCCGGCTGCCCTACCTACGG CGCGCGAAGGTGATGAGCTTGCCCGGCTGCCCTACCTACGG < 41bp 0.511258543596552 0.716758131983824 NA NA prediction 0.410999176774544 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700905 chr16:23700904 synonymous SNV . 0 20 hm7G_associated_SNPs_32608 0 0 1 0 2 PLK1 chr16:23700997 5'GT 23700997 Upstream 94bp 29947 chr9 134388692 134388692 1 + C T rs202121299 134388693 + 134388673 134388713 41 ACATGGTGCAGCTGGTCCACGGCATGACCACCCGCTCCCTG ACATGGTGCAGCTGGTCCATGGCATGACCACCCGCTCCCTG < 41bp 0.521978183037228 0.727474036167591 NA NA prediction 0.410991706260726 Functional Gain - POMT1 ENSG00000130714 CDS Human protein_coding chr9:134388693 chr9:134388692 synonymous SNV . 0 20 hm7G_associated_SNPs_32610 1 0 1 0 2 POMT1 chr9:134388626 3'AG 134388626 Downstream 67bp 29948 chr9 134388692 134388692 1 + C T rs202121299 134388693 + 134388673 134388713 41 ACATGGTGCAGCTGGTCCACGGCATGACCACCCGCTCCCTG ACATGGTGCAGCTGGTCCATGGCATGACCACCCGCTCCCTG < 41bp 0.521978183037228 0.727474036167591 NA NA prediction 0.410991706260726 Functional Gain - POMT1 ENSG00000130714 CDS Human protein_coding chr9:134388693 chr9:134388692 synonymous SNV . 0 20 hm7G_associated_SNPs_32610 1 0 1 0 2 POMT1 chr9:134388718 5'GT 134388718 Upstream 27bp 29949 chr19 19162974 19162974 1 + G A UCEC 19162975 + 19162955 19162995 41 GATTGTGCAGGAGAACAAAGGCTTGAAGGTGCTCATCGAAG GATTGTGCAGGAGAACAAAAGCTTGAAGGTGCTCATCGAAG < 41bp 0.540031075042092 0.74552552105593 NA NA prediction 0.410988892027676 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19162975 chr19:19162974 nonsynonymous SNV 0.942 4 20 hm7G_associated_SNPs_32611 0 0 1 0 1 ARMC6 chr19:19163004 5'GT 19163004 Upstream 31bp 29950 chr1 153740258 153740258 1 + C T UCEC 153740259 + 153740239 153740279 41 TGAAGGCCTGCCAGGAGGACGATGTGCGGCTCCTGTGCCAC TGAAGGCCTGCCAGGAGGATGATGTGCGGCTCCTGTGCCAC < 41bp 0.530511259311706 0.736000897057074 NA NA prediction 0.410979275490735 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153740259 chr1:153740258 synonymous SNV . 0 20 hm7G_associated_SNPs_32615 0 0 1 0 1 INTS3 chr1:153740303 5'GT 153740303 Upstream 46bp 29951 chrX 595501 595501 1 + C T UCEC 595502 + 595482 595522 41 TCGACGAGACCCATTACCCCGACGCCTTCATGCGCGAGGAG TCGACGAGACCCATTACCCTGACGCCTTCATGCGCGAGGAG < 41bp 0.487739801894983 0.705489519797964 NA NA prediction 0.410979039595927 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:595502 chrX:595501 synonymous SNV . 0 20 hm7G_associated_SNPs_32616 0 0 0 0 1 SHOX chrX:595561 5'GT 595561 Upstream 61bp 29952 chr5 102260734 102260734 1 + C T COAD 102260735 + 102260715 102260755 41 GAGAAATGCTCCCCCTACCCGGCTCCCCAAAGGTATGTCAG GAGAAATGCTCCCCCTACCTGGCTCCCCAAAGGTATGTCAG < 41bp 0.493410850604154 0.705488975023553 NA NA prediction 0.410977950047106 Functional Gain - PAM ENSG00000145730 CDS Human protein_coding chr5:102260735 chr5:102260734 nonsynonymous SNV 0.574 4 20 hm7G_associated_SNPs_32617 0 0 1 0 2 PAM chr5:102260661 3'AG 102260661 Downstream 74bp 29953 chr5 102260734 102260734 1 + C T COAD 102260735 + 102260715 102260755 41 GAGAAATGCTCCCCCTACCCGGCTCCCCAAAGGTATGTCAG GAGAAATGCTCCCCCTACCTGGCTCCCCAAAGGTATGTCAG < 41bp 0.493410850604154 0.705488975023553 NA NA prediction 0.410977950047106 Functional Gain - PAM ENSG00000145730 CDS Human protein_coding chr5:102260735 chr5:102260734 nonsynonymous SNV 0.574 4 20 hm7G_associated_SNPs_32617 0 0 1 0 2 PAM chr5:102260746 5'GT 102260746 Upstream 13bp 29954 chr9 136516814 136516814 1 + G A SKCM 136516815 + 136516795 136516835 41 CTCCACACACACCTGACTGGGAGAAAGGTGGTCACAGTGCT CTCCACACACACCTGACTGAGAGAAAGGTGGTCACAGTGCT < 41bp 0.519835880714063 0.72532478708828 NA NA prediction 0.410977812748435 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136516815 chr9:136516814 nonsynonymous SNV 0.443 5 20 hm7G_associated_SNPs_32618 0 0 0 0 2 DBH chr9:136516756 3'AG 136516756 Downstream 59bp 29955 chr9 136516814 136516814 1 + G A SKCM 136516815 + 136516795 136516835 41 CTCCACACACACCTGACTGGGAGAAAGGTGGTCACAGTGCT CTCCACACACACCTGACTGAGAGAAAGGTGGTCACAGTGCT < 41bp 0.519835880714063 0.72532478708828 NA NA prediction 0.410977812748435 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136516815 chr9:136516814 nonsynonymous SNV 0.443 5 20 hm7G_associated_SNPs_32618 0 0 0 0 2 DBH chr9:136516899 5'GT 136516899 Upstream 86bp 29956 chr3 153970947 153970947 1 + C T ACC 153970948 + 153970928 153970968 41 CTGCCCTGGGACACAGCAGCGGGAAGCCGCCTGCAGACCGA CTGCCCTGGGACACAGCAGTGGGAAGCCGCCTGCAGACCGA < 41bp 0.541169289434115 0.746655810345056 NA NA prediction 0.410973041821882 Functional Gain - ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153970948 chr3:153970947 synonymous SNV . 0 20 hm7G_associated_SNPs_32620 0 0 0 0 2 ARHGEF26 chr3:153970905 3'AG 153970905 Downstream 43bp 29957 chr3 153970947 153970947 1 + C T ACC 153970948 + 153970928 153970968 41 CTGCCCTGGGACACAGCAGCGGGAAGCCGCCTGCAGACCGA CTGCCCTGGGACACAGCAGTGGGAAGCCGCCTGCAGACCGA < 41bp 0.541169289434115 0.746655810345056 NA NA prediction 0.410973041821882 Functional Gain - ARHGEF26 ENSG00000114790 CDS Human protein_coding chr3:153970948 chr3:153970947 synonymous SNV . 0 20 hm7G_associated_SNPs_32620 0 0 0 0 2 ARHGEF26 chr3:153970972 5'GT 153970972 Upstream 26bp 29958 chr8 145165435 145165435 1 + C T UCEC 145165436 + 145165416 145165456 41 TGGCCTGGGCGACAGTCCGCGATTAGACCACCGGCCCCAGG TGGCCTGGGCGACAGTCCGTGATTAGACCACCGGCCCCAGG < 41bp 0.517347049364508 0.722833543124062 NA NA prediction 0.410972987519107 Functional Gain - WDR97 ENSG00000179698 CDS Human protein_coding chr8:145165436 chr8:145165435 stopgain 0.030 0 20 hm7G_associated_SNPs_32621 0 0 0 0 1 WDR97 chr8:145165480 5'GT 145165480 Upstream 46bp 29959 chr7 813703 813703 1 + C T COAD 813704 + 813684 813724 41 GGCAGTTTCCCAGCTACCTCGAGACGGTGACAAAGGACATC GGCAGTTTCCCAGCTACCTTGAGACGGTGACAAAGGACATC < 41bp 0.502827630983034 0.708313865566357 NA NA prediction 0.410972469166645 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:813704 chr7:813703 synonymous SNV . 0 20 hm7G_associated_SNPs_32622 0 0 1 0 1 DNAAF5 chr7:813685 3'AG 813685 Downstream 19bp 29960 chr6 37250042 37250042 1 + C T SKCM 37250043 + 37250023 37250063 41 CCCCTCGTTGCCCGGATCTCGGATCAGAACGCTTCTGGGGC CCCCTCGTTGCCCGGATCTTGGATCAGAACGCTTCTGGGGC < 41bp 0.519719000491375 0.725203915343502 NA NA prediction 0.410969829704255 Functional Gain - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37250043 chr6:37250042 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32623 0 0 1 0 2 TBC1D22B chr6:37249961 3'AG 37249961 Downstream 82bp 29961 chr6 37250042 37250042 1 + C T SKCM 37250043 + 37250023 37250063 41 CCCCTCGTTGCCCGGATCTCGGATCAGAACGCTTCTGGGGC CCCCTCGTTGCCCGGATCTTGGATCAGAACGCTTCTGGGGC < 41bp 0.519719000491375 0.725203915343502 NA NA prediction 0.410969829704255 Functional Gain - TBC1D22B ENSG00000065491 CDS Human protein_coding chr6:37250043 chr6:37250042 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32623 0 0 1 0 2 TBC1D22B chr6:37250140 5'GT 37250140 Upstream 99bp 29962 chr10 17271421 17271421 1 - C A LUSC 17271420 - 17271400 17271440 41 ACACGGACCTGGTGGACATGGCTGCGGAGGGTGGCGATGGC ACACGGACCTGGTGGACATTGCTGCGGAGGGTGGCGATGGC < 41bp 0.384661590197872 0.705481802815605 NA NA prediction 0.410963605631209 Functional Gain - VIM-AS1 ENSG00000229124 ncRNA_exonic Human antisense chr10:17271420 chr10:17271421 . . 0 20 hm7G_associated_SNPs_32624 0 0 0 0 1 VIM-AS1 chr10:17271344 5'GT 17271344 Upstream 78bp 29963 chr19 3733756 3733756 1 + C T COAD 3733757 + 3733737 3733777 41 CTGGTCCCTTTCAGATCAACGGGGTGTCTAGCCAGAACCTG CTGGTCCCTTTCAGATCAATGGGGTGTCTAGCCAGAACCTG < 41bp 0.517685299487439 0.723166062532902 NA NA prediction 0.410961526090927 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3733757 chr19:3733756 synonymous SNV . 0 20 hm7G_associated_SNPs_32626 0 0 0 0 1 TJP3 chr19:3733751 3'AG 3733751 Downstream 6bp 29964 chr4 177069470 177069470 1 + C T UCEC 177069471 + 177069451 177069491 41 TGGATACTGTGTATGATCACGGTGCAGATGTATATGGTAGA TGGATACTGTGTATGATCATGGTGCAGATGTATATGGTAGA < 41bp 0.49884291817157 0.705478644360509 NA NA prediction 0.410957288721017 Functional Gain - WDR17 ENSG00000150627 CDS Human protein_coding chr4:177069471 chr4:177069470 synonymous SNV . 0 20 hm7G_associated_SNPs_32627 0 0 1 0 1 WDR17 chr4:177069486 5'GT 177069486 Upstream 17bp 29965 chr19 45783846 45783846 1 + G A SKCM 45783847 + 45783827 45783867 41 TCGCAGGAGGGTGGGGACCGGGGCGCCCCAGGGCTGGCCCT TCGCAGGAGGGTGGGGACCAGGGCGCCCCAGGGCTGGCCCT < 41bp 0.563608422125651 0.769087060697286 NA NA prediction 0.41095727714327 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45783847 chr19:45783846 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_32628 0 0 1 0 1 MARK4 chr19:45783833 3'AG 45783833 Downstream 14bp 29966 chr3 185167766 185167766 1 + G T LUAD 185167767 + 185167747 185167787 41 ATTCTTCAGCCATTATCTGGGGTGTTGGAAGCAACAGCCTC ATTCTTCAGCCATTATCTGTGGTGTTGGAAGCAACAGCCTC < 41bp 0.359901821736015 0.705476708334466 NA NA prediction 0.410953416668933 Functional Gain - MAP3K13 ENSG00000073803 CDS Human protein_coding chr3:185167767 chr3:185167766 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_32629 0 0 0 0 2 MAP3K13 chr3:185167688 3'AG 185167688 Downstream 79bp 29967 chr3 185167766 185167766 1 + G T LUAD 185167767 + 185167747 185167787 41 ATTCTTCAGCCATTATCTGGGGTGTTGGAAGCAACAGCCTC ATTCTTCAGCCATTATCTGTGGTGTTGGAAGCAACAGCCTC < 41bp 0.359901821736015 0.705476708334466 NA NA prediction 0.410953416668933 Functional Gain - MAP3K13 ENSG00000073803 CDS Human protein_coding chr3:185167767 chr3:185167766 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_32629 0 0 0 0 2 MAP3K13 chr3:185167846 5'GT 185167846 Upstream 81bp 29968 chr15 74918179 74918179 1 + C T OV 74918180 + 74918160 74918200 41 CTGACTGGTTCAACTTCCACGGTCACATGTGCATCGCCTTT CTGACTGGTTCAACTTCCATGGTCACATGTGCATCGCCTTT < 41bp 0.531908390793897 0.737383966664214 NA NA prediction 0.410951151740636 Functional Gain - CLK3 ENSG00000179335 CDS Human protein_coding chr15:74918180 chr15:74918179 synonymous SNV . 0 20 hm7G_associated_SNPs_32630 0 0 1 0 1 CLK3 chr15:74918143 3'AG 74918143 Downstream 37bp 29969 chr3 48505240 48505240 1 + G A UCEC 48505241 + 48505221 48505261 41 AGCTCCTCTCCCTGCTGGCGGACCACGACCAGCTGGCACCT AGCTCCTCTCCCTGCTGGCAGACCACGACCAGCTGGCACCT < 41bp 0.501009231484695 0.706484804538404 NA NA prediction 0.410951146107417 Functional Gain - ATRIP ENSG00000164053 CDS Human protein_coding chr3:48505241 chr3:48505240 synonymous SNV . 0 20 hm7G_associated_SNPs_32631 0 0 0 0 2 ATRIP chr3:48505144 3'AG 48505144 Downstream 97bp 29970 chr3 48505240 48505240 1 + G A UCEC 48505241 + 48505221 48505261 41 AGCTCCTCTCCCTGCTGGCGGACCACGACCAGCTGGCACCT AGCTCCTCTCCCTGCTGGCAGACCACGACCAGCTGGCACCT < 41bp 0.501009231484695 0.706484804538404 NA NA prediction 0.410951146107417 Functional Gain - ATRIP ENSG00000164053 CDS Human protein_coding chr3:48505241 chr3:48505240 synonymous SNV . 0 20 hm7G_associated_SNPs_32631 0 0 0 0 2 ATRIP chr3:48505280 5'GT 48505280 Upstream 41bp 29971 chr12 3121377 3121377 1 + C T GBM 3121378 + 3121358 3121398 41 TGGCTCGTCGCAAAGCTCGCGAGATCCAGGCCAAGCTAAAG TGGCTCGTCGCAAAGCTCGTGAGATCCAGGCCAAGCTAAAG < 41bp 0.527683356039673 0.733156430812677 NA NA prediction 0.410946149546007 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3121378 chr12:3121377 stopgain . 0 20 hm7G_associated_SNPs_32632 0 0 1 0 2 TEAD4 chr12:3121336 3'AG 3121336 Downstream 42bp 29972 chr12 3121377 3121377 1 + C T GBM 3121378 + 3121358 3121398 41 TGGCTCGTCGCAAAGCTCGCGAGATCCAGGCCAAGCTAAAG TGGCTCGTCGCAAAGCTCGTGAGATCCAGGCCAAGCTAAAG < 41bp 0.527683356039673 0.733156430812677 NA NA prediction 0.410946149546007 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3121378 chr12:3121377 stopgain . 0 20 hm7G_associated_SNPs_32632 0 0 1 0 2 TEAD4 chr12:3121398 5'GT 3121398 Upstream 22bp 29973 chr17 56342245 56342245 1 + C T UCEC 56342246 + 56342226 56342266 41 GGTCCCCTCTAGTATGTTCCGCCTGGATGAGAATTATCAGC GGTCCCCTCTAGTATGTTCTGCCTGGATGAGAATTATCAGC < 41bp 0.525668538558139 0.731138043529294 NA NA prediction 0.410939009942311 Functional Gain - LPO ENSG00000167419 CDS Human protein_coding chr17:56342246 chr17:56342245 nonsynonymous SNV 0.848 4 20 hm7G_associated_SNPs_32636 0 0 0 0 1 LPO chr17:56342335 5'GT 56342335 Upstream 91bp 29974 chr19 18888034 18888034 1 + G A UCEC 18888035 + 18888015 18888055 41 ACTGACCAGCTCTCTGGCCGGGGTCGGCGACGTCAGCTTCG ACTGACCAGCTCTCTGGCCAGGGTCGGCGACGTCAGCTTCG < 41bp 0.501269958520936 0.706739458877389 NA NA prediction 0.410939000712905 Functional Gain - CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18888035 chr19:18888034 nonsynonymous SNV 0.156 1 20 hm7G_associated_SNPs_32637 0 0 0 0 1 CRTC1 chr19:18887981 3'AG 18887981 Downstream 54bp 29975 chr19 57865133 57865133 1 + G T LUAD 57865134 + 57865114 57865154 41 GTGTTCGTGTACTTCTCTCGGGAGGAGTGGGAACTCCTTGA GTGTTCGTGTACTTCTCTCTGGAGGAGTGGGAACTCCTTGA < 41bp 0.703828945818817 0.909298165110524 NA NA prediction 0.410938438583413 Functional Gain - ZNF304 ENSG00000131845 CDS Human protein_coding chr19:57865134 chr19:57865133 nonsynonymous SNV 0.950 0 20 hm7G_associated_SNPs_32638 0 0 1 0 1 ZNF304 chr19:57865219 5'GT 57865219 Upstream 87bp 29976 chr19 46509917 46509917 1 + C T rs148543679 46509918 + 46509898 46509938 41 GGCTCCTTGGCCCCCAGGTCGGCCCAGCTCAACTCCAAGCG GGCTCCTTGGCCCCCAGGTTGGCCCAGCTCAACTCCAAGCG < 41bp 0.497035024066797 0.705469171711761 NA NA prediction 0.410938343423522 Functional Gain - CCDC61 ENSG00000104983 CDS Human protein_coding chr19:46509918 chr19:46509917 nonsynonymous SNV 0.704 3 20 hm7G_associated_SNPs_32639 0 0 0 0 1 CCDC61 chr19:46509974 5'GT 46509974 Upstream 58bp 29977 chr20 30412073 30412073 1 + G T LUAD 30412074 + 30412054 30412094 41 CTTTCCAGTGGCAAGTTTGGGGCAGTCTGTACCTGCATGGA CTTTCCAGTGGCAAGTTTGTGGCAGTCTGTACCTGCATGGA < 41bp 0.361881065599814 0.705465974127392 NA NA prediction 0.410931948254784 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30412074 chr20:30412073 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_32641 0 0 1 0 2 MYLK2 chr20:30412062 3'AG 30412062 Downstream 12bp 29978 chr20 30412073 30412073 1 + G T LUAD 30412074 + 30412054 30412094 41 CTTTCCAGTGGCAAGTTTGGGGCAGTCTGTACCTGCATGGA CTTTCCAGTGGCAAGTTTGTGGCAGTCTGTACCTGCATGGA < 41bp 0.361881065599814 0.705465974127392 NA NA prediction 0.410931948254784 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30412074 chr20:30412073 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_32641 0 0 1 0 2 MYLK2 chr20:30412155 5'GT 30412155 Upstream 83bp 29979 chr17 40706489 40706489 1 + G T UCEC 40706490 + 40706470 40706510 41 AGGTGTTGGGCAGCCCAGAGGAGGTGCTGGACCGCACGGAC AGGTGTTGGGCAGCCCAGATGAGGTGCTGGACCGCACGGAC < 41bp 0.359808516636261 0.70546585089449 NA NA prediction 0.410931701788981 Functional Gain - HSD17B1 ENSG00000108786 CDS Human protein_coding chr17:40706490 chr17:40706489 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_32642 0 0 0 0 1 HSD17B1 chr17:40706423 3'AG 40706423 Downstream 67bp 29980 chr13 95273342 95273342 1 + C T LUAD 95273343 + 95273323 95273363 41 TCCCATTAGTTTTTGACATCGCTTCCCAAATTCAGATGTTA TCCCATTAGTTTTTGACATTGCTTCCCAAATTCAGATGTTA < 41bp 0.497350775682891 0.705462493522227 NA NA prediction 0.410924987044454 Functional Gain - GPR180 ENSG00000152749 CDS Human protein_coding chr13:95273343 chr13:95273342 synonymous SNV . 0 20 hm7G_associated_SNPs_32645 0 0 0 0 1 GPR180 chr13:95273332 3'AG 95273332 Downstream 11bp 29981 chr7 32582854 32582854 1 + C T LGG 32582855 + 32582835 32582875 41 TCCTTGCCTTACCAGATGGCGCACACAACTACCAGGAAGGT TCCTTGCCTTACCAGATGGTGCACACAACTACCAGGAAGGT < 41bp 0.504003374634442 0.709463064232625 NA NA prediction 0.410919379196366 Functional Gain - AVL9 ENSG00000105778 CDS Human protein_coding chr7:32582855 chr7:32582854 synonymous SNV . 0 20 hm7G_associated_SNPs_32648 0 0 1 0 1 AVL9 chr7:32582873 5'GT 32582873 Upstream 20bp 29982 chr19 45284596 45284596 1 + C T SKCM 45284597 + 45284577 45284617 41 ACGTGTCCATCTTCGAGTTCGACGTCTTCACCAGGCTCTTT ACGTGTCCATCTTCGAGTTTGACGTCTTCACCAGGCTCTTT < 41bp 0.530456588269768 0.735916043742392 NA NA prediction 0.410918910945247 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45284597 chr19:45284596 synonymous SNV . 0 20 hm7G_associated_SNPs_32649 0 0 1 0 1 CBLC chr19:45284620 5'GT 45284620 Upstream 25bp 29983 chr11 65388415 65388415 1 + G A UCEC 65388416 + 65388396 65388436 41 CAGGGCATGCAGGTGCGCCGGGTGCCCCTGGAGATCCCGGA CAGGGCATGCAGGTGCGCCAGGTGCCCCTGGAGATCCCGGA < 41bp 0.478822693778629 0.705459335010486 NA NA prediction 0.410918670020971 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65388416 chr11:65388415 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32650 0 0 1 0 1 PCNX3 chr11:65388437 5'GT 65388437 Upstream 23bp 29984 chrX 47040964 47040964 1 + C T STAD 47040965 + 47040945 47040985 41 CGATGCAGGCTTTCTCTCGCGCCCAGCCTGGTGCTGCTCCT CGATGCAGGCTTTCTCTCGTGCCCAGCCTGGTGCTGCTCCT < 41bp 0.514741996101739 0.72019676879621 NA NA prediction 0.410909545388943 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040965 chrX:47040964 synonymous SNV . 0 20 hm7G_associated_SNPs_32653 0 0 1 0 2 RBM10 chrX:47040906 3'AG 47040906 Downstream 59bp 29985 chrX 47040964 47040964 1 + C T STAD 47040965 + 47040945 47040985 41 CGATGCAGGCTTTCTCTCGCGCCCAGCCTGGTGCTGCTCCT CGATGCAGGCTTTCTCTCGTGCCCAGCCTGGTGCTGCTCCT < 41bp 0.514741996101739 0.72019676879621 NA NA prediction 0.410909545388943 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040965 chrX:47040964 synonymous SNV . 0 20 hm7G_associated_SNPs_32653 0 0 1 0 2 RBM10 chrX:47041045 5'GT 47041045 Upstream 82bp 29986 chr17 17900913 17900913 1 + C T STAD 17900914 + 17900894 17900934 41 AAACCAGGAGCAGGGCAAACGCAAGATTGCCAAATTCGAGG AAACCAGGAGCAGGGCAAATGCAAGATTGCCAAATTCGAGG < 41bp 0.519265789573547 0.724714676510017 NA NA prediction 0.41089777387294 Functional Gain - DRC3 ENSG00000171962 CDS Human protein_coding chr17:17900914 chr17:17900913 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_32654 0 0 0 0 1 DRC3 chr17:17900948 5'GT 17900948 Upstream 36bp 29987 chr9 91077582 91077582 1 + C T UCEC 91077583 + 91077563 91077603 41 CTTTGTATCTTATAAAATACGATGGATTTGACTGTGTTTAT CTTTGTATCTTATAAAATATGATGGATTTGACTGTGTTTAT < 41bp 0.512144782557697 0.717593106350557 NA NA prediction 0.41089664758572 Functional Gain - SPIN1 ENSG00000106723 CDS Human protein_coding chr9:91077583 chr9:91077582 synonymous SNV . 0 20 hm7G_associated_SNPs_32655 0 0 1 0 1 SPIN1 chr9:91077664 5'GT 91077664 Upstream 83bp 29988 chr9 101829206 101829206 1 + C T SKCM 101829207 + 101829187 101829227 41 GCCATTTTCTGGGGACATTCGAGCTGATTTTCAGTGCTTCA GCCATTTTCTGGGGACATTTGAGCTGATTTTCAGTGCTTCA < 41bp 0.506329005823793 0.711774967380017 NA NA prediction 0.410891923112449 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101829207 chr9:101829206 stopgain 1.000 1 20 hm7G_associated_SNPs_32657 0 0 0 0 1 COL15A1 chr9:101829164 3'AG 101829164 Downstream 43bp 29989 chr8 38869201 38869201 1 + G T COAD 38869202 + 38869182 38869222 41 TTATGTTATTCAGGCTGAAGGAAAAGAGCATATTATTCACT TTATGTTATTCAGGCTGAATGAAAAGAGCATATTATTCACT < 41bp 0.390180216741958 0.705445292519673 NA NA prediction 0.410890585039347 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38869202 chr8:38869201 stopgain 0.963 1 20 hm7G_associated_SNPs_32658 0 0 1 0 2 ADAM9 chr8:38869177 3'AG 38869177 Downstream 25bp 29990 chr8 38869201 38869201 1 + G T COAD 38869202 + 38869182 38869222 41 TTATGTTATTCAGGCTGAAGGAAAAGAGCATATTATTCACT TTATGTTATTCAGGCTGAATGAAAAGAGCATATTATTCACT < 41bp 0.390180216741958 0.705445292519673 NA NA prediction 0.410890585039347 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38869202 chr8:38869201 stopgain 0.963 1 20 hm7G_associated_SNPs_32658 0 0 1 0 2 ADAM9 chr8:38869235 5'GT 38869235 Upstream 35bp 29991 chr15 64970399 64970399 1 + C T PRAD 64970400 + 64970380 64970420 41 TGAGCGGTGGAAGGAGGAGCGGGACCGCAAATTGAAGGAGG TGAGCGGTGGAAGGAGGAGTGGGACCGCAAATTGAAGGAGG < 41bp 0.497982894172172 0.705443389453094 NA NA prediction 0.410886778906188 Functional Gain - ZNF609 ENSG00000180357 CDS Human protein_coding chr15:64970400 chr15:64970399 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_32659 0 0 1 0 1 ZNF609 chr15:64970315 3'AG 64970315 Downstream 85bp 29992 chr1 17674444 17674444 1 + G A SKCM 17674445 + 17674425 17674465 41 CACTCCCACAGGATGAAATGGAGATCGGCTACATCCAAGCC CACTCCCACAGGATGAAATAGAGATCGGCTACATCCAAGCC < 41bp 0.51632633964607 0.721768450636499 NA NA prediction 0.410884221980858 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17674445 chr1:17674444 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_32660 0 0 0 0 2 PADI4 chr1:17674436 3'AG 17674436 Downstream 9bp 29993 chr1 17674444 17674444 1 + G A SKCM 17674445 + 17674425 17674465 41 CACTCCCACAGGATGAAATGGAGATCGGCTACATCCAAGCC CACTCCCACAGGATGAAATAGAGATCGGCTACATCCAAGCC < 41bp 0.51632633964607 0.721768450636499 NA NA prediction 0.410884221980858 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17674445 chr1:17674444 nonsynonymous SNV 0.981 0 20 hm7G_associated_SNPs_32660 0 0 0 0 2 PADI4 chr1:17674543 5'GT 17674543 Upstream 100bp 29994 chr19 38845474 38845474 1 + C T LUAD 38845475 + 38845455 38845495 41 ATGAGGGTTATGTACACTTCGGGACCATCAGAGGTAAGGGT ATGAGGGTTATGTACACTTTGGGACCATCAGAGGTAAGGGT < 41bp 0.541709198694248 0.747148385183694 NA NA prediction 0.410878372978892 Functional Gain - CATSPERG ENSG00000099338 CDS Human protein_coding chr19:38845475 chr19:38845474 synonymous SNV . 0 20 hm7G_associated_SNPs_32662 0 0 0 0 1 CATSPERG chr19:38845487 5'GT 38845487 Upstream 14bp 29995 chr5 176520484 176520484 1 + C T HNSC 176520485 + 176520465 176520505 41 GTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCGTG GTCTCTCCTCCAGCGGCCCTGCCTTGCTCGCCGGCCTCGTG < 41bp 0.534121992460507 0.739559964050837 NA NA prediction 0.41087594318066 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520485 chr5:176520484 nonsynonymous SNV 0.043 1 20 hm7G_associated_SNPs_32663 0 0 1 0 3 FGFR4 chr5:176520407 3'AG 176520407 Downstream 78bp 29996 chr5 176520484 176520484 1 + C T HNSC 176520485 + 176520465 176520505 41 GTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCGTG GTCTCTCCTCCAGCGGCCCTGCCTTGCTCGCCGGCCTCGTG < 41bp 0.534121992460507 0.739559964050837 NA NA prediction 0.41087594318066 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520485 chr5:176520484 nonsynonymous SNV 0.043 1 20 hm7G_associated_SNPs_32663 0 0 1 0 3 FGFR4 chr5:176520502 5'GT 176520502 Upstream 19bp 29997 chr5 176520484 176520484 1 + C T HNSC 176520485 + 176520465 176520505 41 GTCTCTCCTCCAGCGGCCCCGCCTTGCTCGCCGGCCTCGTG GTCTCTCCTCCAGCGGCCCTGCCTTGCTCGCCGGCCTCGTG < 41bp 0.534121992460507 0.739559964050837 NA NA prediction 0.41087594318066 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176520485 chr5:176520484 nonsynonymous SNV 0.043 1 20 hm7G_associated_SNPs_32663 0 0 1 0 3 FGFR4 chr5:176520552 5'GT 176520552 Upstream 69bp 29998 chr19 38692538 38692538 1 + C T LUSC 38692539 + 38692519 38692559 41 CTCTTCTCTCTGAACGACCCGGCCCTGAGCCCGGACATCCC CTCTTCTCTCTGAACGACCTGGCCCTGAGCCCGGACATCCC < 41bp 0.496969915343352 0.705437597850342 NA NA prediction 0.410875195700684 Functional Gain - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38692539 chr19:38692538 nonsynonymous SNV 0.957 0 20 hm7G_associated_SNPs_32664 0 0 0 0 2 SIPA1L3 chr19:38692502 3'AG 38692502 Downstream 37bp 29999 chr19 38692538 38692538 1 + C T LUSC 38692539 + 38692519 38692559 41 CTCTTCTCTCTGAACGACCCGGCCCTGAGCCCGGACATCCC CTCTTCTCTCTGAACGACCTGGCCCTGAGCCCGGACATCCC < 41bp 0.496969915343352 0.705437597850342 NA NA prediction 0.410875195700684 Functional Gain - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38692539 chr19:38692538 nonsynonymous SNV 0.957 0 20 hm7G_associated_SNPs_32664 0 0 0 0 2 SIPA1L3 chr19:38692637 5'GT 38692637 Upstream 100bp 30000 chr2 197541384 197541384 1 + C T LGG 197541385 + 197541365 197541405 41 ATCAACTATTGCAAGATTGCGAGGTGAATTGGAAGCATCAA ATCAACTATTGCAAGATTGTGAGGTGAATTGGAAGCATCAA < 41bp 0.518716954569559 0.724153705598833 NA NA prediction 0.410873502058547 Functional Gain - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197541385 chr2:197541384 stopgain 0.905 0 20 hm7G_associated_SNPs_32665 0 0 1 0 1 CCDC150 chr2:197541455 5'GT 197541455 Upstream 72bp 30001 chr19 7986654 7986654 1 + C T UCEC 7986655 + 7986635 7986675 41 GCCCTGGCAGTGGCTTTCTCGCAGGTACCGCCATTCCCCCA GCCCTGGCAGTGGCTTTCTTGCAGGTACCGCCATTCCCCCA < 41bp 0.507089637571847 0.712525877391789 NA NA prediction 0.410872479639884 Functional Gain - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986655 chr19:7986654 nonsynonymous SNV 0.531 4 20 hm7G_associated_SNPs_32666 0 0 1 0 2 SNAPC2 chr19:7986590 3'AG 7986590 Downstream 65bp 30002 chr19 7986654 7986654 1 + C T UCEC 7986655 + 7986635 7986675 41 GCCCTGGCAGTGGCTTTCTCGCAGGTACCGCCATTCCCCCA GCCCTGGCAGTGGCTTTCTTGCAGGTACCGCCATTCCCCCA < 41bp 0.507089637571847 0.712525877391789 NA NA prediction 0.410872479639884 Functional Gain - SNAPC2 ENSG00000104976 CDS Human protein_coding chr19:7986655 chr19:7986654 nonsynonymous SNV 0.531 4 20 hm7G_associated_SNPs_32666 0 0 1 0 2 SNAPC2 chr19:7986658 5'GT 7986658 Upstream 5bp 30003 chr1 215768773 215768773 1 + G T COAD 215768774 + 215768754 215768794 41 GTGGCCACGAGTCATACAGGGAAAGTGGGAGTGTGGAATGC GTGGCCACGAGTCATACAGTGAAAGTGGGAGTGTGGAATGC < 41bp 0.699018122896406 0.904453323016128 NA NA prediction 0.410870400239443 Functional Gain - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215768774 chr1:215768773 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32667 0 0 1 0 2 KCTD3 chr1:215768698 3'AG 215768698 Downstream 76bp 30004 chr1 215768773 215768773 1 + G T COAD 215768774 + 215768754 215768794 41 GTGGCCACGAGTCATACAGGGAAAGTGGGAGTGTGGAATGC GTGGCCACGAGTCATACAGTGAAAGTGGGAGTGTGGAATGC < 41bp 0.699018122896406 0.904453323016128 NA NA prediction 0.410870400239443 Functional Gain - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215768774 chr1:215768773 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32667 0 0 1 0 2 KCTD3 chr1:215768813 5'GT 215768813 Upstream 41bp 30005 chr21 17199433 17199433 1 + C T COAD 17199434 + 17199414 17199454 41 CCAGATTTGCCCATGCATCCGGCACCAAGGCACATAACGGA CCAGATTTGCCCATGCATCTGGCACCAAGGCACATAACGGA < 41bp 0.536472227254572 0.741906383673332 NA NA prediction 0.41086831283752 Functional Gain - USP25 ENSG00000155313 CDS Human protein_coding chr21:17199434 chr21:17199433 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_32668 0 0 1 0 1 USP25 chr21:17199522 5'GT 17199522 Upstream 90bp 30006 chr1 146751857 146751857 1 + G T STAD 146751858 + 146751838 146751878 41 GAGGGAGCAGAGATCAAGAGGAAGGAAGTAAGTTGGAGGTT GAGGGAGCAGAGATCAAGATGAAGGAAGTAAGTTGGAGGTT < 41bp 0.696343379535461 0.901776812580293 NA NA prediction 0.410866866089664 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146751858 chr1:146751857 nonsynonymous SNV 0.857 0 20 hm7G_associated_SNPs_32669 0 0 0 0 1 CHD1L chr1:146751864 5'GT 146751864 Upstream 8bp 30007 chr11 46394213 46394213 1 + G A LUSC 46394214 + 46394194 46394234 41 CCTGCGGATCCTGGCGTGCGGGGGCGACGGCACGGTGAGCT CCTGCGGATCCTGGCGTGCAGGGGCGACGGCACGGTGAGCT < 41bp 0.538687277946425 0.744118433165872 NA NA prediction 0.410862310438894 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394214 chr11:46394213 nonsynonymous SNV 0.971 5 20 hm7G_associated_SNPs_32671 0 0 1 0 2 DGKZ chr11:46394167 3'AG 46394167 Downstream 47bp 30008 chr11 46394213 46394213 1 + G A LUSC 46394214 + 46394194 46394234 41 CCTGCGGATCCTGGCGTGCGGGGGCGACGGCACGGTGAGCT CCTGCGGATCCTGGCGTGCAGGGGCGACGGCACGGTGAGCT < 41bp 0.538687277946425 0.744118433165872 NA NA prediction 0.410862310438894 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46394214 chr11:46394213 nonsynonymous SNV 0.971 5 20 hm7G_associated_SNPs_32671 0 0 1 0 2 DGKZ chr11:46394227 5'GT 46394227 Upstream 15bp 30009 chr2 131796521 131796521 1 + C T COAD 131796522 + 131796502 131796542 41 TCAAAGCTGGGGACGTCATCGAAGTGATGGATGCCACCAAC TCAAAGCTGGGGACGTCATTGAAGTGATGGATGCCACCAAC < 41bp 0.490230090356303 0.705430927225847 NA NA prediction 0.410861854451693 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131796522 chr2:131796521 synonymous SNV . 0 20 hm7G_associated_SNPs_32672 0 0 0 0 2 ARHGEF4 chr2:131796426 3'AG 131796426 Downstream 96bp 30010 chr2 131796521 131796521 1 + C T COAD 131796522 + 131796502 131796542 41 TCAAAGCTGGGGACGTCATCGAAGTGATGGATGCCACCAAC TCAAAGCTGGGGACGTCATTGAAGTGATGGATGCCACCAAC < 41bp 0.490230090356303 0.705430927225847 NA NA prediction 0.410861854451693 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131796522 chr2:131796521 synonymous SNV . 0 20 hm7G_associated_SNPs_32672 0 0 0 0 2 ARHGEF4 chr2:131796605 5'GT 131796605 Upstream 85bp 30011 chr10 7762869 7762869 1 + C T GBM 7762870 + 7762850 7762890 41 TGAGATTTCTTCATGTTCCCGACACATTTGAAGGCCATTTC TGAGATTTCTTCATGTTCCTGACACATTTGAAGGCCATTTC < 41bp 0.532945493840959 0.738376012697222 NA NA prediction 0.410861037712527 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762870 chr10:7762869 synonymous SNV . 0 20 hm7G_associated_SNPs_32673 0 0 0 0 2 ITIH2 chr10:7762819 3'AG 7762819 Downstream 51bp 30012 chr10 7762869 7762869 1 + C T GBM 7762870 + 7762850 7762890 41 TGAGATTTCTTCATGTTCCCGACACATTTGAAGGCCATTTC TGAGATTTCTTCATGTTCCTGACACATTTGAAGGCCATTTC < 41bp 0.532945493840959 0.738376012697222 NA NA prediction 0.410861037712527 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762870 chr10:7762869 synonymous SNV . 0 20 hm7G_associated_SNPs_32673 0 0 0 0 2 ITIH2 chr10:7762926 5'GT 7762926 Upstream 58bp 30013 chr7 143085922 143085922 1 + G A rs75965463 143085923 + 143085903 143085943 41 ACCGCATGCTGAGGGCCACGGGCAAGGCCTATCACCCGCAC ACCGCATGCTGAGGGCCACAGGCAAGGCCTATCACCCGCAC < 41bp 0.476219131543171 0.705429252694971 NA NA prediction 0.410858505389943 Functional Gain - ZYX ENSG00000159840 CDS Human protein_coding chr7:143085923 chr7:143085922 synonymous SNV . 0 20 hm7G_associated_SNPs_32674 0 0 1 0 1 ZYX chr7:143085860 3'AG 143085860 Downstream 63bp 30014 chr16 31371288 31371288 1 + C T UCEC 31371289 + 31371269 31371309 41 TCCAAACACACTTCACTTTCGAGGAATTCAGGCGCAGCTCA TCCAAACACACTTCACTTTTGAGGAATTCAGGCGCAGCTCA < 41bp 0.494612186356508 0.705426106561251 NA NA prediction 0.410852213122501 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31371289 chr16:31371288 synonymous SNV . 0 20 hm7G_associated_SNPs_32677 0 0 0 0 2 ITGAX chr16:31371241 3'AG 31371241 Downstream 48bp 30015 chr16 31371288 31371288 1 + C T UCEC 31371289 + 31371269 31371309 41 TCCAAACACACTTCACTTTCGAGGAATTCAGGCGCAGCTCA TCCAAACACACTTCACTTTTGAGGAATTCAGGCGCAGCTCA < 41bp 0.494612186356508 0.705426106561251 NA NA prediction 0.410852213122501 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31371289 chr16:31371288 synonymous SNV . 0 20 hm7G_associated_SNPs_32677 0 0 0 0 2 ITGAX chr16:31371386 5'GT 31371386 Upstream 99bp 30016 chr17 40843470 40843470 1 + C T COAD 40843471 + 40843451 40843491 41 CAGGTAGTGATAGGGGATACGAACCGCTCCACTTCTGAGGC CAGGTAGTGATAGGGGATATGAACCGCTCCACTTCTGAGGC < 41bp 0.520425732979696 0.725848365709112 NA NA prediction 0.410845265458833 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40843471 chr17:40843470 nonsynonymous SNV 0.006 4 20 hm7G_associated_SNPs_32678 0 0 0 0 2 CNTNAP1 chr17:40843402 3'AG 40843402 Downstream 69bp 30017 chr17 40843470 40843470 1 + C T COAD 40843471 + 40843451 40843491 41 CAGGTAGTGATAGGGGATACGAACCGCTCCACTTCTGAGGC CAGGTAGTGATAGGGGATATGAACCGCTCCACTTCTGAGGC < 41bp 0.520425732979696 0.725848365709112 NA NA prediction 0.410845265458833 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40843471 chr17:40843470 nonsynonymous SNV 0.006 4 20 hm7G_associated_SNPs_32678 0 0 0 0 2 CNTNAP1 chr17:40843529 5'GT 40843529 Upstream 60bp 30018 chr19 10405144 10405144 1 + C T GBM 10405145 + 10405125 10405165 41 TGGAAGGGGCTGAGGCTTCCGCGCTGGCCTGCGCCGCCCGG TGGAAGGGGCTGAGGCTTCTGCGCTGGCCTGCGCCGCCCGG < 41bp 0.506557130239915 0.711979627094044 NA NA prediction 0.410844993708259 Functional Gain - ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10405145 chr19:10405144 synonymous SNV . 0 20 hm7G_associated_SNPs_32679 0 0 1 0 1 ICAM5 chr19:10405077 3'AG 10405077 Downstream 68bp 30019 chr17 4805932 4805932 1 - G A UCEC 4805931 - 4805911 4805951 41 AGCCTCAAGGTCACCCTGACGAATCTCATCTCACTGGTAAG AGCCTCAAGGTCACCCTGATGAATCTCATCTCACTGGTAAG < 41bp 0.519198687595994 0.724616066819172 NA NA prediction 0.410834758446357 Functional Gain - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4805931 chr17:4805932 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_32681 0 0 0 0 1 CHRNE chr17:4805916 5'GT 4805916 Upstream 17bp 30020 chr7 96639203 96639203 1 + G A BRCA 96639204 + 96639184 96639224 41 ACCCCCTCCAGGGCTCGGCGGCCCTGTCGCCACGCTCGCCA ACCCCCTCCAGGGCTCGGCAGCCCTGTCGCCACGCTCGCCA < 41bp 0.484249450831799 0.705414829214143 NA NA prediction 0.410829658428287 Functional Gain - DLX6 ENSG00000006377 CDS Human protein_coding chr7:96639204 chr7:96639203 synonymous SNV . 0 20 hm7G_associated_SNPs_32683 0 0 0 0 1 DLX6 chr7:96639108 3'AG 96639108 Downstream 96bp 30021 chr12 109519189 109519189 1 + C T rs78885554 109519190 + 109519170 109519210 41 TTTCACTAAGTATTCCAGCCGCCACATGGGTATGTACTGAT TTTCACTAAGTATTCCAGCTGCCACATGGGTATGTACTGAT < 41bp 0.538353829218619 0.743764589194892 NA NA prediction 0.410821519952546 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109519190 chr12:109519189 synonymous SNV . 0 20 hm7G_associated_SNPs_32685 0 0 0 0 1 USP30 chr12:109519198 5'GT 109519198 Upstream 10bp 30022 chr2 191353502 191353502 1 + G T GBM 191353503 + 191353483 191353523 41 TCACCTGGGTTTGGGAAGAGGATGTGGTGCCATGATCGGAG TCACCTGGGTTTGGGAAGATGATGTGGTGCCATGATCGGAG < 41bp 0.699445791255969 0.904856010738373 NA NA prediction 0.410820438964809 Functional Gain - MFSD6 ENSG00000151690 CDS Human protein_coding chr2:191353503 chr2:191353502 stopgain 0.963 1 20 hm7G_associated_SNPs_32686 0 0 1 0 1 MFSD6 chr2:191353544 5'GT 191353544 Upstream 43bp 30023 chr1 206653376 206653376 1 + C T COAD 206653377 + 206653357 206653397 41 TGTTTCAGGGCGTGTTGGGCGCCGGCTACCAGGCCCTGCGG TGTTTCAGGGCGTGTTGGGTGCCGGCTACCAGGCCCTGCGG < 41bp 0.509210586017495 0.71462045160109 NA NA prediction 0.410819731167191 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653377 chr1:206653376 synonymous SNV . 0 20 hm7G_associated_SNPs_32687 0 0 0 0 2 IKBKE chr1:206653365 3'AG 206653365 Downstream 12bp 30024 chr1 206653376 206653376 1 + C T COAD 206653377 + 206653357 206653397 41 TGTTTCAGGGCGTGTTGGGCGCCGGCTACCAGGCCCTGCGG TGTTTCAGGGCGTGTTGGGTGCCGGCTACCAGGCCCTGCGG < 41bp 0.509210586017495 0.71462045160109 NA NA prediction 0.410819731167191 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653377 chr1:206653376 synonymous SNV . 0 20 hm7G_associated_SNPs_32687 0 0 0 0 2 IKBKE chr1:206653456 5'GT 206653456 Upstream 81bp 30025 chr2 242415362 242415362 1 + G A UCEC 242415363 + 242415343 242415383 41 AAGCTAACGGAGCTGCAGCGGGACCTGGTGGGCATAGAGAA AAGCTAACGGAGCTGCAGCAGGACCTGGTGGGCATAGAGAA < 41bp 0.515195283239887 0.72060374214317 NA NA prediction 0.410816917806566 Functional Gain - FARP2 ENSG00000006607 CDS Human protein_coding chr2:242415363 chr2:242415362 nonsynonymous SNV 0.952 3 20 hm7G_associated_SNPs_32691 0 0 1 0 1 FARP2 chr2:242415272 3'AG 242415272 Downstream 91bp 30026 chr16 84456040 84456040 1 + C T PRAD 84456041 + 84456021 84456061 41 CCAGTTTCACCGGGGAAGCCGAGCCATGTAGTAAAACAGAC CCAGTTTCACCGGGGAAGCTGAGCCATGTAGTAAAACAGAC < 41bp 0.548397690697456 0.753804502201928 NA NA prediction 0.410813623008944 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84456041 chr16:84456040 synonymous SNV . 0 20 hm7G_associated_SNPs_32694 0 0 0 0 1 ATP2C2 chr16:84455996 3'AG 84455996 Downstream 45bp 30027 chr19 17598303 17598303 1 + C T CESC 17598304 + 17598284 17598324 41 TCTACACGTCGGGGACCACCGGGCTGCCCAAGGCTGCCATT TCTACACGTCGGGGACCACTGGGCTGCCCAAGGCTGCCATT < 41bp 0.511427384633173 0.716833321575352 NA NA prediction 0.410811873884358 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17598304 chr19:17598303 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_32696 0 0 0 0 2 SLC27A1 chr19:17598269 3'AG 17598269 Downstream 35bp 30028 chr19 17598303 17598303 1 + C T CESC 17598304 + 17598284 17598324 41 TCTACACGTCGGGGACCACCGGGCTGCCCAAGGCTGCCATT TCTACACGTCGGGGACCACTGGGCTGCCCAAGGCTGCCATT < 41bp 0.511427384633173 0.716833321575352 NA NA prediction 0.410811873884358 Functional Gain - SLC27A1 ENSG00000130304 CDS Human protein_coding chr19:17598304 chr19:17598303 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_32696 0 0 0 0 2 SLC27A1 chr19:17598338 5'GT 17598338 Upstream 36bp 30029 chr19 38886192 38886192 1 + G T LUAD 38886193 + 38886173 38886213 41 GGCAGGGGCAGGGGGCCTGGGGTGGGGCGGCCGCGGCTACG GGCAGGGGCAGGGGGCCTGTGGTGGGGCGGCCGCGGCTACG < 41bp 0.703724611142695 0.909126759989785 NA NA prediction 0.41080429769418 Functional Gain - SPRED3 ENSG00000188766 CDS Human protein_coding chr19:38886193 chr19:38886192 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_32700 0 0 0 0 1 SPRED3 chr19:38886120 3'AG 38886120 Downstream 73bp 30030 chr6 44122113 44122113 1 + G A HNSC 44122114 + 44122094 44122134 41 CCCTCAAGATTGAGCACACGGAGACAGATACTGTGGACCCC CCCTCAAGATTGAGCACACAGAGACAGATACTGTGGACCCC < 41bp 0.502847186196347 0.70824919370829 NA NA prediction 0.410804015023886 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44122114 chr6:44122113 synonymous SNV . 0 20 hm7G_associated_SNPs_32702 0 0 1 0 2 TMEM63B chr6:44122102 3'AG 44122102 Downstream 12bp 30031 chr6 44122113 44122113 1 + G A HNSC 44122114 + 44122094 44122134 41 CCCTCAAGATTGAGCACACGGAGACAGATACTGTGGACCCC CCCTCAAGATTGAGCACACAGAGACAGATACTGTGGACCCC < 41bp 0.502847186196347 0.70824919370829 NA NA prediction 0.410804015023886 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44122114 chr6:44122113 synonymous SNV . 0 20 hm7G_associated_SNPs_32702 0 0 1 0 2 TMEM63B chr6:44122182 5'GT 44122182 Upstream 70bp 30032 chr12 133196482 133196482 1 + G A UCEC 133196483 + 133196463 133196503 41 GACGCCGACTGCGTGGCTGGGGAGCTGGACATGCTGGGAAA GACGCCGACTGCGTGGCTGAGGAGCTGGACATGCTGGGAAA < 41bp 0.573853728081236 0.779253838544753 NA NA prediction 0.410800220927034 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196483 chr12:133196482 nonsynonymous SNV 0.010 4 20 hm7G_associated_SNPs_32704 0 0 0 0 2 P2RX2 chr12:133196430 3'AG 133196430 Downstream 53bp 30033 chr12 133196482 133196482 1 + G A UCEC 133196483 + 133196463 133196503 41 GACGCCGACTGCGTGGCTGGGGAGCTGGACATGCTGGGAAA GACGCCGACTGCGTGGCTGAGGAGCTGGACATGCTGGGAAA < 41bp 0.573853728081236 0.779253838544753 NA NA prediction 0.410800220927034 Functional Gain - P2RX2 ENSG00000187848 CDS Human protein_coding chr12:133196483 chr12:133196482 nonsynonymous SNV 0.010 4 20 hm7G_associated_SNPs_32704 0 0 0 0 2 P2RX2 chr12:133196505 5'GT 133196505 Upstream 24bp 30034 chr22 45821887 45821887 1 + G A rs1022477 45821888 + 45821868 45821908 41 AAGAACAAGAGGACAACTTGGCCGAGATCACCAACCTCCTG AAGAACAAGAGGACAACTTAGCCGAGATCACCAACCTCCTG < 41bp 0.508122307444416 0.713518368017024 NA NA prediction 0.410792121145217 Functional Gain - RIBC2 ENSG00000128408 CDS Human protein_coding chr22:45821888 chr22:45821887 synonymous SNV . 0 20 hm7G_associated_SNPs_32706 0 0 0 0 1 RIBC2 chr22:45821828 3'AG 45821828 Downstream 60bp 30035 chr16 57180026 57180026 1 + C T rs149575340 57180027 + 57180007 57180047 41 TCCTCCTCATCATCACGGACGGGGTCATCAGTGACATGGAG TCCTCCTCATCATCACGGATGGGGTCATCAGTGACATGGAG < 41bp 0.536420116060098 0.741815805964947 NA NA prediction 0.410791379809699 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57180027 chr16:57180026 synonymous SNV . 0 20 hm7G_associated_SNPs_32707 0 0 0 0 1 CPNE2 chr16:57179997 3'AG 57179997 Downstream 30bp 30036 chr4 174223289 174223289 1 + G T UCEC 174223290 + 174223270 174223310 41 AGGTCTCCAGATTTGGGGTGGTGAAAACTTTGAGATCTCAT AGGTCTCCAGATTTGGGGTTGTGAAAACTTTGAGATCTCAT < 41bp 0.385827943575509 0.705393665211973 NA NA prediction 0.410787330423947 Functional Gain - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174223290 chr4:174223289 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32710 0 0 1 0 2 GALNT7 chr4:174223198 3'AG 174223198 Downstream 92bp 30037 chr4 174223289 174223289 1 + G T UCEC 174223290 + 174223270 174223310 41 AGGTCTCCAGATTTGGGGTGGTGAAAACTTTGAGATCTCAT AGGTCTCCAGATTTGGGGTTGTGAAAACTTTGAGATCTCAT < 41bp 0.385827943575509 0.705393665211973 NA NA prediction 0.410787330423947 Functional Gain - GALNT7 ENSG00000109586 CDS Human protein_coding chr4:174223290 chr4:174223289 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32710 0 0 1 0 2 GALNT7 chr4:174223315 5'GT 174223315 Upstream 27bp 30038 chr9 75309494 75309494 1 + C T UCEC 75309495 + 75309475 75309515 41 GGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGACCAA GGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGACCAA < 41bp 0.512753990052955 0.718146577661374 NA NA prediction 0.410785175216839 Functional Gain - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309495 chr9:75309494 stopgain 0.991 1 20 hm7G_associated_SNPs_32711 2 0 0 10 2 TMC1 chr9:75309447 3'AG 75309447 Downstream 48bp 30039 chr9 75309494 75309494 1 + C T UCEC 75309495 + 75309475 75309515 41 GGTGGAAGATAAGCTACCTCGAAGAGAGAGCTTGAGACCAA GGTGGAAGATAAGCTACCTTGAAGAGAGAGCTTGAGACCAA < 41bp 0.512753990052955 0.718146577661374 NA NA prediction 0.410785175216839 Functional Gain - TMC1 ENSG00000165091 CDS Human protein_coding chr9:75309495 chr9:75309494 stopgain 0.991 1 20 hm7G_associated_SNPs_32711 2 0 0 10 2 TMC1 chr9:75309459 3'AG 75309459 Downstream 36bp 30040 chr5 896860 896860 1 + G T LIHC 896861 + 896841 896881 41 CCAGCAGTGAAAATCTGGAGGAAGAGACAGAAAACATAATT CCAGCAGTGAAAATCTGGATGAAGAGACAGAAAACATAATT < 41bp 0.701852734903462 0.907243811860898 NA NA prediction 0.410782153914872 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:896861 chr5:896860 nonsynonymous SNV 0.825 0 20 hm7G_associated_SNPs_32712 0 0 1 0 2 TRIP13 chr5:896780 3'AG 896780 Downstream 81bp 30041 chr5 896860 896860 1 + G T LIHC 896861 + 896841 896881 41 CCAGCAGTGAAAATCTGGAGGAAGAGACAGAAAACATAATT CCAGCAGTGAAAATCTGGATGAAGAGACAGAAAACATAATT < 41bp 0.701852734903462 0.907243811860898 NA NA prediction 0.410782153914872 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:896861 chr5:896860 nonsynonymous SNV 0.825 0 20 hm7G_associated_SNPs_32712 0 0 1 0 2 TRIP13 chr5:896909 5'GT 896909 Upstream 50bp 30042 chr15 29406154 29406154 1 + G A STAD 29406155 + 29406135 29406175 41 CCGCATCATCGAGATCAACGGGCAGAGCGTGGTGGCCACAG CCGCATCATCGAGATCAACAGGCAGAGCGTGGTGGCCACAG < 41bp 0.534432208845634 0.739822961729631 NA NA prediction 0.410781505767995 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29406155 chr15:29406154 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_32713 0 0 1 0 2 APBA2 chr15:29406079 3'AG 29406079 Downstream 76bp 30043 chr15 29406154 29406154 1 + G A STAD 29406155 + 29406135 29406175 41 CCGCATCATCGAGATCAACGGGCAGAGCGTGGTGGCCACAG CCGCATCATCGAGATCAACAGGCAGAGCGTGGTGGCCACAG < 41bp 0.534432208845634 0.739822961729631 NA NA prediction 0.410781505767995 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29406155 chr15:29406154 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_32713 0 0 1 0 2 APBA2 chr15:29406219 5'GT 29406219 Upstream 66bp 30044 chrX 48923351 48923351 1 + C T UCEC 48923352 + 48923332 48923372 41 TGCCACCCCTGTCCTCACCCGGGGCGCTGGCCCCCAGCTCT TGCCACCCCTGTCCTCACCTGGGGCGCTGGCCCCCAGCTCT < 41bp 0.495351488179272 0.705389805066554 NA NA prediction 0.410779610133108 Functional Gain - CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48923352 chrX:48923351 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_32714 0 0 0 0 2 CCDC120 chrX:48923278 3'AG 48923278 Downstream 74bp 30045 chrX 48923351 48923351 1 + C T UCEC 48923352 + 48923332 48923372 41 TGCCACCCCTGTCCTCACCCGGGGCGCTGGCCCCCAGCTCT TGCCACCCCTGTCCTCACCTGGGGCGCTGGCCCCCAGCTCT < 41bp 0.495351488179272 0.705389805066554 NA NA prediction 0.410779610133108 Functional Gain - CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48923352 chrX:48923351 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_32714 0 0 0 0 2 CCDC120 chrX:48923376 5'GT 48923376 Upstream 26bp 30046 chr15 34645943 34645943 1 + G A SKCM 34645944 + 34645924 34645964 41 TCACCCTCTGCAGGTTCATGGAGTTTGAGGCTGAGGAGATG TCACCCTCTGCAGGTTCATAGAGTTTGAGGCTGAGGAGATG < 41bp 0.507347237761401 0.712736751173681 NA NA prediction 0.410779026824559 Functional Gain - NUTM1 ENSG00000184507 CDS Human protein_coding chr15:34645944 chr15:34645943 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32715 0 0 0 0 1 NUTM1 chr15:34645937 3'AG 34645937 Downstream 7bp 30047 chr8 1624706 1624706 1 + C T ESCA 1624707 + 1624687 1624727 41 CTGTTGAATTAGGTGGAAACGGCCACAGATTCTGACACGGA CTGTTGAATTAGGTGGAAATGGCCACAGATTCTGACACGGA < 41bp 0.536142615599587 0.741532111592075 NA NA prediction 0.410778991984977 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1624707 chr8:1624706 nonsynonymous SNV 0.917 4 20 hm7G_associated_SNPs_32716 0 0 0 0 2 DLGAP2 chr8:1624699 3'AG 1624699 Downstream 8bp 30048 chr8 1624706 1624706 1 + C T ESCA 1624707 + 1624687 1624727 41 CTGTTGAATTAGGTGGAAACGGCCACAGATTCTGACACGGA CTGTTGAATTAGGTGGAAATGGCCACAGATTCTGACACGGA < 41bp 0.536142615599587 0.741532111592075 NA NA prediction 0.410778991984977 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1624707 chr8:1624706 nonsynonymous SNV 0.917 4 20 hm7G_associated_SNPs_32716 0 0 0 0 2 DLGAP2 chr8:1624784 5'GT 1624784 Upstream 79bp 30049 chr16 57490504 57490504 1 + G A COAD 57490505 + 57490485 57490525 41 GTGACCCAGTGCAATACCCGGCTCACACGTGTGCTAGAAGA GTGACCCAGTGCAATACCCAGCTCACACGTGTGCTAGAAGA < 41bp 0.51905775141046 0.724446424568186 NA NA prediction 0.410777346315452 Functional Gain - COQ9 ENSG00000088682 CDS Human protein_coding chr16:57490505 chr16:57490504 nonsynonymous SNV 0.058 0 20 hm7G_associated_SNPs_32717 0 0 1 0 3 COQ9 chr16:57490416 3'AG 57490416 Downstream 89bp 30050 chr16 57490504 57490504 1 + G A COAD 57490505 + 57490485 57490525 41 GTGACCCAGTGCAATACCCGGCTCACACGTGTGCTAGAAGA GTGACCCAGTGCAATACCCAGCTCACACGTGTGCTAGAAGA < 41bp 0.51905775141046 0.724446424568186 NA NA prediction 0.410777346315452 Functional Gain - COQ9 ENSG00000088682 CDS Human protein_coding chr16:57490505 chr16:57490504 nonsynonymous SNV 0.058 0 20 hm7G_associated_SNPs_32717 0 0 1 0 3 COQ9 chr16:57490538 5'GT 57490538 Upstream 35bp 30051 chr16 57490504 57490504 1 + G A COAD 57490505 + 57490485 57490525 41 GTGACCCAGTGCAATACCCGGCTCACACGTGTGCTAGAAGA GTGACCCAGTGCAATACCCAGCTCACACGTGTGCTAGAAGA < 41bp 0.51905775141046 0.724446424568186 NA NA prediction 0.410777346315452 Functional Gain - COQ9 ENSG00000088682 CDS Human protein_coding chr16:57490505 chr16:57490504 nonsynonymous SNV 0.058 0 20 hm7G_associated_SNPs_32717 0 0 1 0 3 COQ9 chr16:57490558 5'GT 57490558 Upstream 55bp 30052 chr11 64854471 64854471 1 + C T SKCM 64854472 + 64854452 64854492 41 CTTCTACAGCCAGGCCCCCCGGCCCCCAGCTTCCCCAGGCC CTTCTACAGCCAGGCCCCCTGGCCCCCAGCTTCCCCAGGCC < 41bp 0.514358554966053 0.719745672728739 NA NA prediction 0.410774235525372 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854472 chr11:64854471 nonsynonymous SNV 0.024 2 20 hm7G_associated_SNPs_32720 0 0 1 0 2 ZFPL1 chr11:64854400 3'AG 64854400 Downstream 72bp 30053 chr11 64854471 64854471 1 + C T SKCM 64854472 + 64854452 64854492 41 CTTCTACAGCCAGGCCCCCCGGCCCCCAGCTTCCCCAGGCC CTTCTACAGCCAGGCCCCCTGGCCCCCAGCTTCCCCAGGCC < 41bp 0.514358554966053 0.719745672728739 NA NA prediction 0.410774235525372 Functional Gain - ZFPL1 ENSG00000162300 CDS Human protein_coding chr11:64854472 chr11:64854471 nonsynonymous SNV 0.024 2 20 hm7G_associated_SNPs_32720 0 0 1 0 2 ZFPL1 chr11:64854546 5'GT 64854546 Upstream 76bp 30054 chr16 50338857 50338857 1 + C T GBM 50338858 + 50338838 50338878 41 CGTTCCCCAGCGCCACCGCCGGACCCCAGACAGGTGCGTGC CGTTCCCCAGCGCCACCGCTGGACCCCAGACAGGTGCGTGC < 41bp 0.534085366534974 0.73947194333153 NA NA prediction 0.410773153593113 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50338858 chr16:50338857 nonsynonymous SNV 0.084 0 20 hm7G_associated_SNPs_32721 0 0 1 0 1 ADCY7 chr16:50338836 3'AG 50338836 Downstream 22bp 30055 chr1 11896113 11896113 1 + C T PAAD 11896114 + 11896094 11896134 41 GTGAGCATCCTGCGCACCACGGTCCACCATGCCTTCCCGGT GTGAGCATCCTGCGCACCATGGTCCACCATGCCTTCCCGGT < 41bp 0.526656866909184 0.732043298917296 NA NA prediction 0.410772864016225 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11896114 chr1:11896113 nonsynonymous SNV 0.979 5 20 hm7G_associated_SNPs_32722 0 0 1 0 2 CLCN6 chr1:11896024 3'AG 11896024 Downstream 90bp 30056 chr1 11896113 11896113 1 + C T PAAD 11896114 + 11896094 11896134 41 GTGAGCATCCTGCGCACCACGGTCCACCATGCCTTCCCGGT GTGAGCATCCTGCGCACCATGGTCCACCATGCCTTCCCGGT < 41bp 0.526656866909184 0.732043298917296 NA NA prediction 0.410772864016225 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11896114 chr1:11896113 nonsynonymous SNV 0.979 5 20 hm7G_associated_SNPs_32722 0 0 1 0 2 CLCN6 chr1:11896210 5'GT 11896210 Upstream 98bp 30057 chr2 239003116 239003116 1 + G A UCEC 239003117 + 239003097 239003137 41 CAGTTTCCAGGCACCCAGCGGCTTCCCAATACCTGTAACTT CAGTTTCCAGGCACCCAGCAGCTTCCCAATACCTGTAACTT < 41bp 0.538778332042877 0.744163769302869 NA NA prediction 0.410770874519983 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:239003117 chr2:239003116 nonsynonymous SNV 0.090 5 20 hm7G_associated_SNPs_32723 0 0 0 0 2 SCLY chr2:239003061 3'AG 239003061 Downstream 56bp 30058 chr2 239003116 239003116 1 + G A UCEC 239003117 + 239003097 239003137 41 CAGTTTCCAGGCACCCAGCGGCTTCCCAATACCTGTAACTT CAGTTTCCAGGCACCCAGCAGCTTCCCAATACCTGTAACTT < 41bp 0.538778332042877 0.744163769302869 NA NA prediction 0.410770874519983 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:239003117 chr2:239003116 nonsynonymous SNV 0.090 5 20 hm7G_associated_SNPs_32723 0 0 0 0 2 SCLY chr2:239003163 5'GT 239003163 Upstream 48bp 30059 chr3 51743422 51743422 1 + C T UCEC 51743423 + 51743403 51743443 41 CCATCACTGGTGTTATTGGCGGTTCCTACAGTGATGTCTCC CCATCACTGGTGTTATTGGTGGTTCCTACAGTGATGTCTCC < 41bp 0.514318911693533 0.71970424149648 NA NA prediction 0.410770659605893 Functional Gain - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51743423 chr3:51743422 synonymous SNV . 0 20 hm7G_associated_SNPs_32725 0 0 0 0 1 GRM2 chr3:51743449 5'GT 51743449 Upstream 28bp 30060 chr14 61997207 61997207 1 + C T COAD 61997208 + 61997188 61997228 41 GAGATGCTCTGTGGTCACGCGCCTTTTGAGGCAGAGAACGA GAGATGCTCTGTGGTCACGTGCCTTTTGAGGCAGAGAACGA < 41bp 0.534846461618567 0.740230618556591 NA NA prediction 0.410768313876048 Functional Gain - PRKCH ENSG00000027075;ENSG00000258989 CDS Human other chr14:61997208 chr14:61997207 nonsynonymous SNV 0.050 3 20 hm7G_associated_SNPs_32726 0 0 0 0 1 PRKCH chr14:61997125 3'AG 61997125 Downstream 83bp 30061 chr1 196642206 196642206 1 + C T UCEC 196642207 + 196642187 196642227 41 CCAGGCTATCTATAAATGCCGCCCTGGATATAGATCTCTTG CCAGGCTATCTATAAATGCTGCCCTGGATATAGATCTCTTG < 41bp 0.515628169299659 0.721006859647805 NA NA prediction 0.410757380696292 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196642207 chr1:196642206 nonsynonymous SNV 0.710 3 20 hm7G_associated_SNPs_32729 0 0 1 0 1 CFH chr1:196642108 3'AG 196642108 Downstream 99bp 30062 chr16 28883291 28883291 1 + G A CESC 28883292 + 28883272 28883312 41 ACCCTCCCTTGGACACTCCGGAAACAGCCACAGGTACCGGA ACCCTCCCTTGGACACTCCAGAAACAGCCACAGGTACCGGA < 41bp 0.49870247820443 0.705378365529941 NA NA prediction 0.410756731059881 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28883292 chr16:28883291 synonymous SNV . 0 20 hm7G_associated_SNPs_32730 0 0 1 0 1 SH2B1 chr16:28883304 5'GT 28883304 Upstream 14bp 30063 chrX 117744319 117744319 1 + C T UCEC 117744320 + 117744300 117744340 41 AATTCCCCATGTGACTATTCGGTATGCGGAGATTCCCGATG AATTCCCCATGTGACTATTTGGTATGCGGAGATTCCCGATG < 41bp 0.502117701939537 0.707496035844887 NA NA prediction 0.4107566678107 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117744320 chrX:117744319 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_32731 0 0 1 0 2 DOCK11 chrX:117744235 3'AG 117744235 Downstream 85bp 30064 chrX 117744319 117744319 1 + C T UCEC 117744320 + 117744300 117744340 41 AATTCCCCATGTGACTATTCGGTATGCGGAGATTCCCGATG AATTCCCCATGTGACTATTTGGTATGCGGAGATTCCCGATG < 41bp 0.502117701939537 0.707496035844887 NA NA prediction 0.4107566678107 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117744320 chrX:117744319 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_32731 0 0 1 0 2 DOCK11 chrX:117744381 5'GT 117744381 Upstream 63bp 30065 chr10 115335684 115335684 1 + C T rs11575749 115335685 + 115335665 115335705 41 AGCCCAACCCCTGTGAACACGGTGGGGACTGCCTCGTCCAT AGCCCAACCCCTGTGAACATGGTGGGGACTGCCTCGTCCAT < 41bp 0.518715031807282 0.724093196510027 NA NA prediction 0.410756329405491 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115335685 chr10:115335684 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_32732 0 0 0 0 2 HABP2 chr10:115335656 3'AG 115335656 Downstream 29bp 30066 chr10 115335684 115335684 1 + C T rs11575749 115335685 + 115335665 115335705 41 AGCCCAACCCCTGTGAACACGGTGGGGACTGCCTCGTCCAT AGCCCAACCCCTGTGAACATGGTGGGGACTGCCTCGTCCAT < 41bp 0.518715031807282 0.724093196510027 NA NA prediction 0.410756329405491 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115335685 chr10:115335684 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_32732 0 0 0 0 2 HABP2 chr10:115335763 5'GT 115335763 Upstream 80bp 30067 chr9 35398937 35398937 1 + C T SKCM 35398938 + 35398918 35398958 41 CGACATCCTGGGCCAGGTTCGGGGCACAGGGAATGCATCTC CGACATCCTGGGCCAGGTTTGGGGCACAGGGAATGCATCTC < 41bp 0.521340465685379 0.726711558067835 NA NA prediction 0.410742184764913 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35398938 chr9:35398937 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_32734 0 0 0 0 2 UNC13B chr9:35398879 3'AG 35398879 Downstream 59bp 30068 chr9 35398937 35398937 1 + C T SKCM 35398938 + 35398918 35398958 41 CGACATCCTGGGCCAGGTTCGGGGCACAGGGAATGCATCTC CGACATCCTGGGCCAGGTTTGGGGCACAGGGAATGCATCTC < 41bp 0.521340465685379 0.726711558067835 NA NA prediction 0.410742184764913 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35398938 chr9:35398937 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_32734 0 0 0 0 2 UNC13B chr9:35399031 5'GT 35399031 Upstream 95bp 30069 chr20 37531340 37531340 1 + C T CESC 37531341 + 37531321 37531361 41 AGAGAAAATCAACGAGATGCGGGTGGCTCCTGAGCAGCAGA AGAGAAAATCAACGAGATGTGGGTGGCTCCTGAGCAGCAGA < 41bp 0.489057883783934 0.705370401433693 NA NA prediction 0.410740802867386 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37531341 chr20:37531340 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_32735 0 0 0 0 2 PPP1R16B chr20:37531311 3'AG 37531311 Downstream 30bp 30070 chr20 37531340 37531340 1 + C T CESC 37531341 + 37531321 37531361 41 AGAGAAAATCAACGAGATGCGGGTGGCTCCTGAGCAGCAGA AGAGAAAATCAACGAGATGTGGGTGGCTCCTGAGCAGCAGA < 41bp 0.489057883783934 0.705370401433693 NA NA prediction 0.410740802867386 Functional Gain - PPP1R16B ENSG00000101445 CDS Human protein_coding chr20:37531341 chr20:37531340 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_32735 0 0 0 0 2 PPP1R16B chr20:37531435 5'GT 37531435 Upstream 96bp 30071 chr1 200869240 200869240 1 + G A LGG 200869241 + 200869221 200869261 41 TTCCTCCCCAGGAGCTGACGGGCACCTTGCCAGCGGAGTAT TTCCTCCCCAGGAGCTGACAGGCACCTTGCCAGCGGAGTAT < 41bp 0.575304970378778 0.780673624624879 NA NA prediction 0.410737308492202 Functional Gain - C1orf106 ENSG00000163362 CDS Human protein_coding chr1:200869241 chr1:200869240 synonymous SNV . 0 20 hm7G_associated_SNPs_32736 0 0 1 0 1 C1orf106 chr1:200869232 3'AG 200869232 Downstream 9bp 30072 chr22 40801264 40801264 1 + C T UCEC 40801265 + 40801245 40801285 41 CCTGGCTCTACCCAGAGATCGGCTACTGCCAGGGCACCGGC CCTGGCTCTACCCAGAGATTGGCTACTGCCAGGGCACCGGC < 41bp 0.526129212474566 0.731494744626753 NA NA prediction 0.410731064304374 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40801265 chr22:40801264 synonymous SNV . 0 20 hm7G_associated_SNPs_32737 0 0 1 0 1 SGSM3 chr22:40801288 5'GT 40801288 Upstream 25bp 30073 chr8 10159135 10159135 1 + C T UCEC 10159136 + 10159116 10159156 41 AGGTCTTCTGGGAGAATCACGACCCGACCCAAGGTAGAGTG AGGTCTTCTGGGAGAATCATGACCCGACCCAAGGTAGAGTG < 41bp 0.496596254778359 0.705365323634415 NA NA prediction 0.41073064726883 Functional Gain - MSRA ENSG00000175806 CDS Human protein_coding chr8:10159136 chr8:10159135 synonymous SNV . 0 20 hm7G_associated_SNPs_32738 0 0 0 0 2 MSRA chr8:10159044 3'AG 10159044 Downstream 92bp 30074 chr8 10159135 10159135 1 + C T UCEC 10159136 + 10159116 10159156 41 AGGTCTTCTGGGAGAATCACGACCCGACCCAAGGTAGAGTG AGGTCTTCTGGGAGAATCATGACCCGACCCAAGGTAGAGTG < 41bp 0.496596254778359 0.705365323634415 NA NA prediction 0.41073064726883 Functional Gain - MSRA ENSG00000175806 CDS Human protein_coding chr8:10159136 chr8:10159135 synonymous SNV . 0 20 hm7G_associated_SNPs_32738 0 0 0 0 2 MSRA chr8:10159148 5'GT 10159148 Upstream 14bp 30075 chr17 29849412 29849412 1 + C T LUAD 29849413 + 29849393 29849433 41 CTCCAGCACGGCCTTTGGACGGTAAGGCCCGCCTCGAGGGA CTCCAGCACGGCCTTTGGATGGTAAGGCCCGCCTCGAGGGA < 41bp 0.52725900319284 0.732623316275255 NA NA prediction 0.41072862616483 Functional Gain - RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29849413 chr17:29849412 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_32740 0 0 1 0 2 RAB11FIP4 chr17:29849378 3'AG 29849378 Downstream 35bp 30076 chr17 29849412 29849412 1 + C T LUAD 29849413 + 29849393 29849433 41 CTCCAGCACGGCCTTTGGACGGTAAGGCCCGCCTCGAGGGA CTCCAGCACGGCCTTTGGATGGTAAGGCCCGCCTCGAGGGA < 41bp 0.52725900319284 0.732623316275255 NA NA prediction 0.41072862616483 Functional Gain - RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29849413 chr17:29849412 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_32740 0 0 1 0 2 RAB11FIP4 chr17:29849413 5'GT 29849413 Upstream 2bp 30077 chr12 53687113 53687113 1 + C T rs113469395 53687114 + 53687094 53687134 41 CGCGACATTGACCGCTACACGGAAGCTCTGCTGCAAGGCTG CGCGACATTGACCGCTACATGGAAGCTCTGCTGCAAGGCTG < 41bp 0.517432700307463 0.722795060484121 NA NA prediction 0.410724720353316 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53687114 chr12:53687113 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_32741 0 0 1 0 1 ESPL1 chr12:53687057 3'AG 53687057 Downstream 57bp 30078 chr4 123301319 123301319 1 + C T STAD 123301320 + 123301300 123301340 41 GTTCAACCAGCGACAAAGACGATAACTACACCCACAGGATG GTTCAACCAGCGACAAAGATGATAACTACACCCACAGGATG < 41bp 0.527601148835189 0.73296309354749 NA NA prediction 0.410723889424603 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123301320 chr4:123301319 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_32742 0 0 0 0 2 ADAD1 chr4:123301252 3'AG 123301252 Downstream 68bp 30079 chr4 123301319 123301319 1 + C T STAD 123301320 + 123301300 123301340 41 GTTCAACCAGCGACAAAGACGATAACTACACCCACAGGATG GTTCAACCAGCGACAAAGATGATAACTACACCCACAGGATG < 41bp 0.527601148835189 0.73296309354749 NA NA prediction 0.410723889424603 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123301320 chr4:123301319 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_32742 0 0 0 0 2 ADAD1 chr4:123301396 5'GT 123301396 Upstream 78bp 30080 chr17 40940393 40940393 1 + C T PAAD 40940394 + 40940374 40940414 41 CCCAGGGAGGAATCTCCGGCGCAGACCCCGATCCCGGCTGC CCCAGGGAGGAATCTCCGGTGCAGACCCCGATCCCGGCTGC < 41bp 0.486934294398916 0.705358297668963 NA NA prediction 0.410716595337927 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40940394 chr17:40940393 nonsynonymous SNV 0.920 4 20 hm7G_associated_SNPs_32744 0 0 1 0 1 WNK4 chr17:40940308 3'AG 40940308 Downstream 86bp 30081 chr1 160097563 160097563 1 + G A LUAD 160097564 + 160097544 160097584 41 GGCAGTCATCTTCCTCATCGGCATCATAGTGGCCAACGTGC GGCAGTCATCTTCCTCATCAGCATCATAGTGGCCAACGTGC < 41bp 0.488407730708754 0.705356376311183 NA NA prediction 0.410712752622366 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160097564 chr1:160097563 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_32746 0 0 0 0 1 ATP1A2 chr1:160097610 5'GT 160097610 Upstream 48bp 30082 chr13 114436030 114436030 1 + G T UCEC 114436031 + 114436011 114436051 41 GTGCCCACCCCCTCTTCAAGGACCTTAACTGGAGGCAGCTG GTGCCCACCCCCTCTTCAATGACCTTAACTGGAGGCAGCTG < 41bp 0.356794253916548 0.705355874310265 NA NA prediction 0.410711748620531 Functional Gain - GRK1 ENSG00000185974 CDS Human protein_coding chr13:114436031 chr13:114436030 nonsynonymous SNV 0.599 0 20 hm7G_associated_SNPs_32747 0 0 0 0 1 GRK1 chr13:114436058 5'GT 114436058 Upstream 29bp 30083 chr1 206647680 206647680 1 + G A LGG 206647681 + 206647661 206647701 41 TCCCCAATGGCAGAAATCCGGAGAGCTGGTTGCTGTGAAGG TCCCCAATGGCAGAAATCCAGAGAGCTGGTTGCTGTGAAGG < 41bp 0.534554472880006 0.739909191173687 NA NA prediction 0.410709436587363 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206647681 chr1:206647680 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_32749 0 0 0 0 1 IKBKE chr1:206647674 3'AG 206647674 Downstream 7bp 30084 chr4 111441445 111441445 1 + C T PRAD 111441446 + 111441426 111441466 41 ATCCTGTGCTTAACGTGAACGGTGTCAAGAACATCACACAG ATCCTGTGCTTAACGTGAATGGTGTCAAGAACATCACACAG < 41bp 0.517950775722065 0.723305301123827 NA NA prediction 0.410709050803524 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111441446 chr4:111441445 synonymous SNV . 0 20 hm7G_associated_SNPs_32750 0 0 0 0 2 ENPEP chr4:111441371 3'AG 111441371 Downstream 75bp 30085 chr4 111441445 111441445 1 + C T PRAD 111441446 + 111441426 111441466 41 ATCCTGTGCTTAACGTGAACGGTGTCAAGAACATCACACAG ATCCTGTGCTTAACGTGAATGGTGTCAAGAACATCACACAG < 41bp 0.517950775722065 0.723305301123827 NA NA prediction 0.410709050803524 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111441446 chr4:111441445 synonymous SNV . 0 20 hm7G_associated_SNPs_32750 0 0 0 0 2 ENPEP chr4:111441522 5'GT 111441522 Upstream 78bp 30086 chr10 129866399 129866399 1 + G A LUSC 129866400 + 129866380 129866420 41 CCCGCAGCAGCTCCCCGACGGCTGCAAAGCCCCCAGGCTGG CCCGCAGCAGCTCCCCGACAGCTGCAAAGCCCCCAGGCTGG < 41bp 0.48336776614287 0.70535380232922 NA NA prediction 0.410707604658439 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129866400 chr10:129866399 nonsynonymous SNV 0.128 1 20 hm7G_associated_SNPs_32751 0 0 0 0 1 PTPRE chr10:129866387 3'AG 129866387 Downstream 13bp 30087 chr3 184060556 184060556 1 + C T HNSC 184060557 + 184060537 184060577 41 GCTGAGCAGTTTGCCATCGCGGAAGCCAAGCTCCGAGCATG GCTGAGCAGTTTGCCATCGTGGAAGCCAAGCTCCGAGCATG < 41bp 0.540485294393416 0.745838765801302 NA NA prediction 0.410706942815772 Functional Gain - FAM131A ENSG00000175182 CDS Human protein_coding chr3:184060557 chr3:184060556 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_32752 0 0 1 0 2 FAM131A chr3:184060532 3'AG 184060532 Downstream 25bp 30088 chr3 184060556 184060556 1 + C T HNSC 184060557 + 184060537 184060577 41 GCTGAGCAGTTTGCCATCGCGGAAGCCAAGCTCCGAGCATG GCTGAGCAGTTTGCCATCGTGGAAGCCAAGCTCCGAGCATG < 41bp 0.540485294393416 0.745838765801302 NA NA prediction 0.410706942815772 Functional Gain - FAM131A ENSG00000175182 CDS Human protein_coding chr3:184060557 chr3:184060556 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_32752 0 0 1 0 2 FAM131A chr3:184060648 5'GT 184060648 Upstream 93bp 30089 chr17 48594775 48594775 1 + C T rs114335869 48594776 + 48594756 48594796 41 CACCTTGTAGCACGTCCTGCGAATCCTGATGAAGCCACAAA CACCTTGTAGCACGTCCTGTGAATCCTGATGAAGCCACAAA < 41bp 0.493160878049777 0.705353437185889 NA NA prediction 0.410706874371777 Functional Gain - MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48594776 chr17:48594775 nonsynonymous SNV 0.027 1 20 hm7G_associated_SNPs_32753 0 0 0 0 1 MYCBPAP chr17:48594813 5'GT 48594813 Upstream 39bp 30090 chr1 171756906 171756906 1 + G T HNSC 171756907 + 171756887 171756927 41 TCTGTGGGTGGGGACATTGGGGTCCGGACCGTTCAGCACCA TCTGTGGGTGGGGACATTGTGGTCCGGACCGTTCAGCACCA < 41bp 0.708463281081382 0.913815331938272 NA NA prediction 0.41070410171378 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171756907 chr1:171756906 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_32756 0 0 1 0 1 METTL13 chr1:171756875 3'AG 171756875 Downstream 32bp 30091 chr7 157041136 157041136 1 + C T STAD 157041137 + 157041117 157041157 41 AGTTGCTTGGAACCAGTGCCGACGTGGACATTCACCACCTC AGTTGCTTGGAACCAGTGCTGACGTGGACATTCACCACCTC < 41bp 0.493100188655623 0.705351358310816 NA NA prediction 0.410702716621632 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:157041137 chr7:157041136 synonymous SNV . 0 20 hm7G_associated_SNPs_32757 0 0 1 0 1 UBE3C chr7:157041062 3'AG 157041062 Downstream 75bp 30092 chr7 6634101 6634101 1 + G A COAD 6634102 + 6634082 6634122 41 ACTGTGTGAGGTTAGCCAAGGCCCTTGTAGATGACTACTGC ACTGTGTGAGGTTAGCCAAAGCCCTTGTAGATGACTACTGC < 41bp 0.54251515460136 0.747865139606663 NA NA prediction 0.410699970010604 Functional Gain - C7orf26 ENSG00000146576 CDS Human protein_coding chr7:6634102 chr7:6634101 synonymous SNV . 0 20 hm7G_associated_SNPs_32759 0 0 1 0 1 C7orf26 chr7:6634066 3'AG 6634066 Downstream 36bp 30093 chr1 1246312 1246312 1 + G A SKCM 1246313 + 1246293 1246333 41 GGAGGATGACGGCTGTGCTGGTGGCCGTGGGGCTGGGGGCT GGAGGATGACGGCTGTGCTAGTGGCCGTGGGGCTGGGGGCT < 41bp 0.480597386001696 0.705349836602495 NA NA prediction 0.410699673204991 Functional Gain - PUSL1 ENSG00000169972 CDS Human protein_coding chr1:1246313 chr1:1246312 synonymous SNV . 0 20 hm7G_associated_SNPs_32760 0 0 1 0 1 PUSL1 chr1:1246289 3'AG 1246289 Downstream 24bp 30094 chr4 108824419 108824419 1 + C T COAD 108824420 + 108824400 108824440 41 CTCTCAGGCAAAAGTTCAACGGATTCTACGATTGATTTCTG CTCTCAGGCAAAAGTTCAATGGATTCTACGATTGATTTCTG < 41bp 0.499263299526289 0.70534896667915 NA NA prediction 0.410697933358299 Functional Gain - SGMS2 ENSG00000164023 CDS Human protein_coding chr4:108824420 chr4:108824419 nonsynonymous SNV 0.642 2 20 hm7G_associated_SNPs_32761 0 0 1 0 1 SGMS2 chr4:108824389 3'AG 108824389 Downstream 31bp 30095 chr1 175097755 175097755 1 + C T GBM 175097756 + 175097736 175097776 41 GCCCGTTTCCCACACCCTTCGGACTGCAGTCAGGTTCAGCA GCCCGTTTCCCACACCCTTTGGACTGCAGTCAGGTTCAGCA < 41bp 0.494818959439395 0.70534802657219 NA NA prediction 0.410696053144381 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175097756 chr1:175097755 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_32762 0 0 0 0 1 TNN chr1:175097731 3'AG 175097731 Downstream 25bp 30096 chr16 88872202 88872202 1 + C T STAD 88872203 + 88872183 88872223 41 CTACCGCTTCCGCCAGGAGCGCAGTGTCCCCACCTTCAAGG CTACCGCTTCCGCCAGGAGTGCAGTGTCCCCACCTTCAAGG < 41bp 0.532830726299557 0.738178626878586 NA NA prediction 0.410695801158059 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88872203 chr16:88872202 nonsynonymous SNV 0.728 0 20 hm7G_associated_SNPs_32763 0 0 1 0 1 CDT1 chr16:88872132 3'AG 88872132 Downstream 71bp 30097 chr1 67205069 67205069 1 + C T UCEC 67205070 + 67205050 67205090 41 GAACCTGGCAGTGAATTGGCGATGTGAGCCTTCAAGCACTG GAACCTGGCAGTGAATTGGTGATGTGAGCCTTCAAGCACTG < 41bp 0.526067837687812 0.731414395844491 NA NA prediction 0.410693116313358 Functional Gain - SGIP1 ENSG00000118473 CDS Human protein_coding chr1:67205070 chr1:67205069 stopgain 0.986 1 20 hm7G_associated_SNPs_32764 0 0 0 0 1 SGIP1 chr1:67205018 3'AG 67205018 Downstream 52bp 30098 chr17 72295966 72295966 1 + C T rs34159194 72295967 + 72295947 72295987 41 TGCAGTCGAAGACGGGCACCGAGTGCTTCTCAGCTTCCACG TGCAGTCGAAGACGGGCACTGAGTGCTTCTCAGCTTCCACG < 41bp 0.526077608612672 0.731422692183871 NA NA prediction 0.410690167142398 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72295967 chr17:72295966 synonymous SNV . 0 20 hm7G_associated_SNPs_32766 2 0 0 0 1 DNAI2 chr17:72295996 5'GT 72295996 Upstream 31bp 30099 chr3 160149510 160149510 1 + C T UCEC 160149511 + 160149491 160149531 41 AGCCCAGAGGATCTTGAAGCGATCAAGAATCCAGATTCTAT AGCCCAGAGGATCTTGAAGTGATCAAGAATCCAGATTCTAT < 41bp 0.518699468343132 0.724042069055104 NA NA prediction 0.410685201423944 Functional Gain - SMC4 ENSG00000113810 CDS Human protein_coding chr3:160149511 chr3:160149510 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_32767 0 0 1 0 1 SMC4 chr3:160149431 3'AG 160149431 Downstream 80bp 30100 chr16 202971 202971 1 + G A SKCM 202972 + 202952 202992 41 GGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAG GGGCCAAGATCTCCACGCAAGCCGACACCATCGGCACCGAG < 41bp 0.558075315073888 0.763417208933621 NA NA prediction 0.410683787719465 Functional Gain - HBZ ENSG00000130656 CDS Human protein_coding chr16:202972 chr16:202971 synonymous SNV . 0 20 hm7G_associated_SNPs_32768 0 0 0 0 1 HBZ chr16:203003 5'GT 203003 Upstream 33bp 30101 chr9 131703787 131703787 1 + C T STAD 131703788 + 131703768 131703808 41 CAGAACCTCTCTGACCGCTCGCGCCAGGCCTACACTTTCCA CAGAACCTCTCTGACCGCTTGCGCCAGGCCTACACTTTCCA < 41bp 0.529673514224719 0.735014266118795 NA NA prediction 0.410681503788152 Functional Gain - PHYHD1 ENSG00000175287;ENSG00000251184 CDS Human other chr9:131703788 chr9:131703787 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_32769 0 0 1 0 1 PHYHD1 chr9:131703850 5'GT 131703850 Upstream 64bp 30102 chr17 2279157 2279157 1 + G A rs527379774 2279158 + 2279138 2279178 41 AGCTTGCGGCTGTGTGTGCGGCTGCCTACACTGTGCGTACA AGCTTGCGGCTGTGTGTGCAGCTGCCTACACTGTGCGTACA < 41bp 0.542491593988319 0.747830186902701 NA NA prediction 0.410677185828765 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2279158 chr17:2279157 synonymous SNV . 0 20 hm7G_associated_SNPs_32772 0 0 1 0 1 SGSM2 chr17:2279169 5'GT 2279169 Upstream 13bp 30103 chr22 25243755 25243755 1 + C T LUSC 25243756 + 25243736 25243776 41 AAGACCTGGAGCAGCTGATCGAGAGCGCGTGAGTGCAAAGC AAGACCTGGAGCAGCTGATTGAGAGCGCGTGAGTGCAAAGC < 41bp 0.5099857757093 0.715323902128302 NA NA prediction 0.410676252838004 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25243756 chr22:25243755 synonymous SNV . 0 20 hm7G_associated_SNPs_32773 0 0 0 0 1 SGSM1 chr22:25243763 5'GT 25243763 Upstream 9bp 30104 chr12 56492571 56492571 1 + C T BLCA 56492572 + 56492552 56492592 41 TTTGGGAGTTGATGACCTTCGGGGCAGAGCCCTATGCAGGG TTTGGGAGTTGATGACCTTTGGGGCAGAGCCCTATGCAGGG < 41bp 0.50887158478545 0.714208284177562 NA NA prediction 0.410673398784223 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56492572 chr12:56492571 synonymous SNV . 0 20 hm7G_associated_SNPs_32775 0 0 1 0 1 ERBB3 chr12:56492543 3'AG 56492543 Downstream 29bp 30105 chr14 55241656 55241656 1 + G T UCEC 55241657 + 55241637 55241677 41 TCTTGGCTCTCACAGTCGAGGCTTTGGGCAATCCAACTCCC TCTTGGCTCTCACAGTCGATGCTTTGGGCAATCCAACTCCC < 41bp 0.360787099892148 0.705335449917309 NA NA prediction 0.410670899834618 Functional Gain - SAMD4A ENSG00000020577 CDS Human protein_coding chr14:55241657 chr14:55241656 nonsynonymous SNV 0.962 4 20 hm7G_associated_SNPs_32776 0 0 1 0 1 SAMD4A chr14:55241652 3'AG 55241652 Downstream 5bp 30106 chr16 1268002 1268002 1 + C T SKCM 1268003 + 1267983 1268023 41 GGCCTTCCTCACGCTGTTCCGCGTGTCCACGGGGGACAACT GGCCTTCCTCACGCTGTTCTGCGTGTCCACGGGGGACAACT < 41bp 0.495081324850159 0.70533420101775 NA NA prediction 0.4106684020355 Functional Gain - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1268003 chr16:1268002 nonsynonymous SNV 0.951 5 20 hm7G_associated_SNPs_32778 0 0 1 0 1 CACNA1H chr16:1268040 5'GT 1268040 Upstream 39bp 30107 chr1 3380224 3380224 1 + G A rs140063293 3380225 + 3380205 3380245 41 AGCCTCATACTCGGAGCCCGGCCAAAAACAAGGTAGGGGCC AGCCTCATACTCGGAGCCCAGCCAAAAACAAGGTAGGGGCC < 41bp 0.486161439623884 0.705334006777824 NA NA prediction 0.410668013555647 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3380225 chr1:3380224 synonymous SNV . 0 20 hm7G_associated_SNPs_32780 0 0 1 0 1 ARHGEF16 chr1:3380236 5'GT 3380236 Upstream 13bp 30108 chr6 170632308 170632308 1 + C T GBM 170632309 + 170632289 170632329 41 CTTCATTTACCGTCCCATTCGACAGCGGGTCTACTCACTCT CTTCATTTACCGTCCCATTTGACAGCGGGTCTACTCACTCT < 41bp 0.528934259764908 0.734266627242076 NA NA prediction 0.410664734954336 Functional Gain - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170632309 chr6:170632308 stopgain 0.014 1 20 hm7G_associated_SNPs_32781 0 0 1 0 1 FAM120B chr6:170632347 5'GT 170632347 Upstream 40bp 30109 chr10 118306822 118306822 1 + C T CESC 118306823 + 118306803 118306843 41 CAGGAAAAGAAGTTTGCTACGAAAGACTCGGCTGCTTCAGT CAGGAAAAGAAGTTTGCTATGAAAGACTCGGCTGCTTCAGT < 41bp 0.505494523589224 0.710825886542952 NA NA prediction 0.410662725907457 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118306823 chr10:118306822 synonymous SNV . 0 20 hm7G_associated_SNPs_32782 0 0 0 0 1 PNLIP chr10:118306806 3'AG 118306806 Downstream 17bp 30110 chr1 11897127 11897127 1 + C T UCEC 11897128 + 11897108 11897148 41 TGAAGTCCTACCCATCCAGCGAGCTACGGAACATGTGTGAT TGAAGTCCTACCCATCCAGTGAGCTACGGAACATGTGTGAT < 41bp 0.524598623470427 0.729928190519049 NA NA prediction 0.410659134097243 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897128 chr1:11897127 synonymous SNV . 0 20 hm7G_associated_SNPs_32784 0 0 1 0 2 CLCN6 chr1:11897056 3'AG 11897056 Downstream 72bp 30111 chr1 11897127 11897127 1 + C T UCEC 11897128 + 11897108 11897148 41 TGAAGTCCTACCCATCCAGCGAGCTACGGAACATGTGTGAT TGAAGTCCTACCCATCCAGTGAGCTACGGAACATGTGTGAT < 41bp 0.524598623470427 0.729928190519049 NA NA prediction 0.410659134097243 Functional Gain - CLCN6 ENSG00000011021 CDS Human protein_coding chr1:11897128 chr1:11897127 synonymous SNV . 0 20 hm7G_associated_SNPs_32784 0 0 1 0 2 CLCN6 chr1:11897213 5'GT 11897213 Upstream 87bp 30112 chr20 43052693 43052693 1 + C T UCEC 43052694 + 43052674 43052714 41 CGATCCAGGGAAGATCAAGCGGCTGCGTTCCCAGGTGCAGG CGATCCAGGGAAGATCAAGTGGCTGCGTTCCCAGGTGCAGG < 41bp 0.523237664145986 0.728566915089537 NA NA prediction 0.410658501887102 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052694 chr20:43052693 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_32785 0 0 1 0 1 HNF4A chr20:43052658 3'AG 43052658 Downstream 36bp 30113 chr10 82185704 82185704 1 + G T UCEC 82185705 + 82185685 82185725 41 GTGGTAAAGGAGCACATCAGGACTGAAGTGAAGGATTTCCA GTGGTAAAGGAGCACATCATGACTGAAGTGAAGGATTTCCA < 41bp 0.704860865967687 0.91018711239586 NA NA prediction 0.410652492856345 Functional Gain - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82185705 chr10:82185704 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_32787 0 0 1 0 2 FAM213A chr10:82185622 3'AG 82185622 Downstream 83bp 30114 chr10 82185704 82185704 1 + G T UCEC 82185705 + 82185685 82185725 41 GTGGTAAAGGAGCACATCAGGACTGAAGTGAAGGATTTCCA GTGGTAAAGGAGCACATCATGACTGAAGTGAAGGATTTCCA < 41bp 0.704860865967687 0.91018711239586 NA NA prediction 0.410652492856345 Functional Gain - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82185705 chr10:82185704 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_32787 0 0 1 0 2 FAM213A chr10:82185762 5'GT 82185762 Upstream 59bp 30115 chr2 202700431 202700431 1 + C T COAD 202700432 + 202700412 202700452 41 AGTCGTGACCCTCTGGTACCGGCCCCCTGATGCTTTGCTGG AGTCGTGACCCTCTGGTACTGGCCCCCTGATGCTTTGCTGG < 41bp 0.495921344523741 0.705325511033238 NA NA prediction 0.410651022066476 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202700432 chr2:202700431 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_32788 0 0 0 0 2 CDK15 chr2:202700366 3'AG 202700366 Downstream 66bp 30116 chr2 202700431 202700431 1 + C T COAD 202700432 + 202700412 202700452 41 AGTCGTGACCCTCTGGTACCGGCCCCCTGATGCTTTGCTGG AGTCGTGACCCTCTGGTACTGGCCCCCTGATGCTTTGCTGG < 41bp 0.495921344523741 0.705325511033238 NA NA prediction 0.410651022066476 Functional Gain - CDK15 ENSG00000138395 CDS Human protein_coding chr2:202700432 chr2:202700431 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_32788 0 0 0 0 2 CDK15 chr2:202700486 5'GT 202700486 Upstream 56bp 30117 chr12 101381342 101381342 1 + C T CESC 101381343 + 101381323 101381363 41 TAAACAAATAAGCAGGTTTCGGAGATGGTTACCTAAGAAGC TAAACAAATAAGCAGGTTTTGGAGATGGTTACCTAAGAAGC < 41bp 0.499467635151787 0.705323569154467 NA NA prediction 0.410647138308935 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101381343 chr12:101381342 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32790 0 0 0 0 1 ANO4 chr12:101381317 3'AG 101381317 Downstream 26bp 30118 chr16 57687131 57687131 1 + C T rs113005540 57687132 + 57687112 57687152 41 CAGGTCCTCCCCACACGGCCGCTCACAATGCCTCGGTGGAC CAGGTCCTCCCCACACGGCTGCTCACAATGCCTCGGTGGAC < 41bp 0.512326364815241 0.717649873530099 NA NA prediction 0.410647017429715 Functional Gain - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57687132 chr16:57687131 synonymous SNV . 0 20 hm7G_associated_SNPs_32791 1 0 0 0 1 ADGRG1 chr16:57687115 3'AG 57687115 Downstream 17bp 30119 chr1 1389811 1389811 1 + G A SKCM 1389812 + 1389792 1389832 41 GCTACATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGG GCTACATCGAGGCTCGGCTAGGGAAGCCGTCCCTAGTGAGG < 41bp 0.578542467882994 0.783865667665413 NA NA prediction 0.410646399564838 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389812 chr1:1389811 synonymous SNV . 0 20 hm7G_associated_SNPs_32792 0 0 0 0 2 ATAD3C chr1:1389725 3'AG 1389725 Downstream 87bp 30120 chr1 1389811 1389811 1 + G A SKCM 1389812 + 1389792 1389832 41 GCTACATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGG GCTACATCGAGGCTCGGCTAGGGAAGCCGTCCCTAGTGAGG < 41bp 0.578542467882994 0.783865667665413 NA NA prediction 0.410646399564838 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389812 chr1:1389811 synonymous SNV . 0 20 hm7G_associated_SNPs_32792 0 0 0 0 2 ATAD3C chr1:1389880 5'GT 1389880 Upstream 70bp 30121 chr4 15054166 15054166 1 + C T COAD 15054167 + 15054147 15054187 41 GCGAATAGAACGCTTCTCTCGAAAAGTTTTTGTTGGTGGTC GCGAATAGAACGCTTCTCTTGAAAAGTTTTTGTTGGTGGTC < 41bp 0.523423981038397 0.728746807810112 NA NA prediction 0.410645653543429 Functional Gain - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15054167 chr4:15054166 stopgain 1.000 1 20 hm7G_associated_SNPs_32794 0 0 0 0 1 CPEB2 chr4:15054208 5'GT 15054208 Upstream 43bp 30122 chr6 44140801 44140801 1 + C T UCEC 44140802 + 44140782 44140822 41 AGTGCCCTGCTGGAGAAGGCGTATGCCAAGTGAGTGCTGGG AGTGCCCTGCTGGAGAAGGTGTATGCCAAGTGAGTGCTGGG < 41bp 0.50207239631869 0.707394451561972 NA NA prediction 0.410644110486565 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44140802 chr6:44140801 nonsynonymous SNV 0.925 5 20 hm7G_associated_SNPs_32795 0 0 0 0 1 CAPN11 chr6:44140810 5'GT 44140810 Upstream 10bp 30123 chr2 44102330 44102330 1 + G A PAAD 44102331 + 44102311 44102351 41 TGCCTACATCATCATCTACGGGATGCCCACCTACTGGCTGG TGCCTACATCATCATCTACAGGATGCCCACCTACTGGCTGG < 41bp 0.552573062172001 0.757891660796836 NA NA prediction 0.41063719724967 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44102331 chr2:44102330 nonsynonymous SNV 0.665 0 20 hm7G_associated_SNPs_32798 0 0 1 0 1 ABCG8 chr2:44102285 3'AG 44102285 Downstream 46bp 30124 chr6 31556405 31556405 1 + G T UCEC 31556406 + 31556386 31556426 41 ACAAGAGAGGCACCAAGGAGGATCCAAGAGCTGACTATGCC ACAAGAGAGGCACCAAGGATGATCCAAGAGCTGACTATGCC < 41bp 0.654819640909388 0.860137480285955 NA NA prediction 0.410635678753135 Functional Gain - LST1 ENSG00000204482 CDS Human protein_coding chr6:31556406 chr6:31556405 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_32799 0 0 0 0 1 LST1 chr6:31556340 3'AG 31556340 Downstream 66bp 30125 chr20 31389085 31389085 1 + G A SARC 31389086 + 31389066 31389106 41 CATCTTTTCTGAGCACAGAGGGTACAGGCCGGCTCTTCTTC CATCTTTTCTGAGCACAGAAGGTACAGGCCGGCTCTTCTTC < 41bp 0.49925490132468 0.705314738372085 NA NA prediction 0.410629476744169 Functional Gain - DNMT3B ENSG00000088305 CDS Human protein_coding chr20:31389086 chr20:31389085 synonymous SNV . 0 20 hm7G_associated_SNPs_32801 0 0 0 0 1 DNMT3B chr20:31389084 3'AG 31389084 Downstream 2bp 30126 chr19 36220873 36220873 1 + C T rs192205094 36220874 + 36220854 36220894 41 CCTCCCCTACGCAGCGCTGCGAGCTCTGCCTGAAGCCTGGC CCTCCCCTACGCAGCGCTGTGAGCTCTGCCTGAAGCCTGGC < 41bp 0.501371967103873 0.706683866895721 NA NA prediction 0.410623799583697 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36220874 chr19:36220873 synonymous SNV . 0 20 hm7G_associated_SNPs_32804 0 0 1 0 1 KMT2B chr19:36220868 3'AG 36220868 Downstream 6bp 30127 chr3 53213609 53213609 1 + G A COAD 53213610 + 53213590 53213630 41 CAGAGCGTGGGAAAACACTGGTGCAGAAGAAGCCGACCATG CAGAGCGTGGGAAAACACTAGTGCAGAAGAAGCCGACCATG < 41bp 0.550241103151672 0.755546071404102 NA NA prediction 0.41060993650486 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53213610 chr3:53213609 synonymous SNV . 0 20 hm7G_associated_SNPs_32806 0 0 1 0 1 PRKCD chr3:53213593 3'AG 53213593 Downstream 17bp 30128 chr5 5318307 5318307 1 + C T CESC 5318308 + 5318288 5318328 41 GCAGTGCCTGGCTGGGGGCCGGCCGGCCTCAGGCTGCCTCC GCAGTGCCTGGCTGGGGGCTGGCCGGCCTCAGGCTGCCTCC < 41bp 0.516520175110821 0.721823873098725 NA NA prediction 0.410607395975807 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5318308 chr5:5318307 nonsynonymous SNV 0.115 3 20 hm7G_associated_SNPs_32809 0 0 0 0 2 ADAMTS16 chr5:5318247 3'AG 5318247 Downstream 61bp 30129 chr5 5318307 5318307 1 + C T CESC 5318308 + 5318288 5318328 41 GCAGTGCCTGGCTGGGGGCCGGCCGGCCTCAGGCTGCCTCC GCAGTGCCTGGCTGGGGGCTGGCCGGCCTCAGGCTGCCTCC < 41bp 0.516520175110821 0.721823873098725 NA NA prediction 0.410607395975807 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5318308 chr5:5318307 nonsynonymous SNV 0.115 3 20 hm7G_associated_SNPs_32809 0 0 0 0 2 ADAMTS16 chr5:5318394 5'GT 5318394 Upstream 88bp 30130 chr22 39421153 39421153 1 + C T rs75858538 39421154 + 39421134 39421174 41 CCGACTGCCTGCTAACAGGCGCTTCCAGATCACCTGGTTTG CCGACTGCCTGCTAACAGGTGCTTCCAGATCACCTGGTTTG < 41bp 0.52198007068314 0.727281205543094 NA NA prediction 0.410602269719907 Functional Gain - APOBEC3D ENSG00000243811 CDS Human protein_coding chr22:39421154 chr22:39421153 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_32810 0 0 0 0 1 APOBEC3D chr22:39421075 3'AG 39421075 Downstream 79bp 30131 chr6 3287260 3287260 1 - G A rs140418737 3287259 - 3287239 3287279 41 GGCCACGAGGTGAAGGTGCCGCTCCTGGAGAACTTCTATGC GGCCACGAGGTGAAGGTGCTGCTCCTGGAGAACTTCTATGC < 41bp 0.536369894413966 0.741670972482421 NA NA prediction 0.41060215613691 Functional Gain - SLC22A23 ENSG00000137266 CDS Human protein_coding chr6:3287259 chr6:3287260 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_32811 0 0 1 0 1 SLC22A23 chr6:3287325 3'AG 3287325 Downstream 66bp 30132 chr6 168999590 168999590 1 + G A UCEC 168999591 + 168999571 168999611 41 CCCTGAGTGTGCGCACGGCGGCCTCTACAAGCCAGTGCAGT CCCTGAGTGTGCGCACGGCAGCCTCTACAAGCCAGTGCAGT < 41bp 0.560090711355362 0.765391487469482 NA NA prediction 0.410601552228241 Functional Gain - SMOC2 ENSG00000112562 CDS Human protein_coding chr6:168999591 chr6:168999590 nonsynonymous SNV 0.545 5 20 hm7G_associated_SNPs_32812 0 0 0 0 1 SMOC2 chr6:168999684 5'GT 168999684 Upstream 95bp 30133 chr1 158059361 158059361 1 + C T LUAD 158059362 + 158059342 158059382 41 CGCTGGCACCTACACCTGCCGGGCCATCGTGCCTCGAATCG CGCTGGCACCTACACCTGCTGGGCCATCGTGCCTCGAATCG < 41bp 0.540533022351982 0.745830316687099 NA NA prediction 0.410594588670235 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158059362 chr1:158059361 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_32814 0 0 0 0 2 KIRREL chr1:158059292 3'AG 158059292 Downstream 70bp 30134 chr1 158059361 158059361 1 + C T LUAD 158059362 + 158059342 158059382 41 CGCTGGCACCTACACCTGCCGGGCCATCGTGCCTCGAATCG CGCTGGCACCTACACCTGCTGGGCCATCGTGCCTCGAATCG < 41bp 0.540533022351982 0.745830316687099 NA NA prediction 0.410594588670235 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158059362 chr1:158059361 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_32814 0 0 0 0 2 KIRREL chr1:158059418 5'GT 158059418 Upstream 58bp 30135 chr1 117503940 117503940 1 + G A rs34625170 117503941 + 117503921 117503961 41 CCCACAGAGCTGGCATGCCGGGTGGTGGACACGAAGAGTGG CCCACAGAGCTGGCATGCCAGGTGGTGGACACGAAGAGTGG < 41bp 0.516220382694308 0.721513587100238 NA NA prediction 0.41058640881186 Functional Gain - PTGFRN ENSG00000134247 CDS Human protein_coding chr1:117503941 chr1:117503940 nonsynonymous SNV 0.437 0 20 hm7G_associated_SNPs_32815 0 0 1 0 1 PTGFRN chr1:117503865 3'AG 117503865 Downstream 76bp 30136 chr9 139887582 139887582 1 + C T UCEC 139887583 + 139887563 139887603 41 ACGCTTTCAGGGGGGCCCTCGGCACTGGCCTTTGACCTCTC ACGCTTTCAGGGGGGCCCTTGGCACTGGCCTTTGACCTCTC < 41bp 0.502361023605586 0.707652075111369 NA NA prediction 0.410582103011566 Functional Gain - C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139887583 chr9:139887582 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_32818 0 0 1 0 1 C9orf142 chr9:139887505 3'AG 139887505 Downstream 78bp 30137 chr6 28327755 28327755 1 + C T LUSC 28327756 + 28327736 28327776 41 GAGAGGCAGCTGGATGAGCCGGCGCCGCAGGTAGAAAGAAC GAGAGGCAGCTGGATGAGCTGGCGCCGCAGGTAGAAAGAAC < 41bp 0.540541452261111 0.745831233140115 NA NA prediction 0.410579561758007 Functional Gain - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28327756 chr6:28327755 nonsynonymous SNV 0.015 0 20 hm7G_associated_SNPs_32819 0 0 0 0 1 ZKSCAN3 chr6:28327765 5'GT 28327765 Upstream 11bp 30138 chr16 57758673 57758673 1 + C T UCEC 57758674 + 57758654 57758694 41 CCCAGACTTCCTCTCCTACCGCCATGCCAGCTTCGGACCCC CCCAGACTTCCTCTCCTACTGCCATGCCAGCTTCGGACCCC < 41bp 0.52856808572962 0.73385480817753 NA NA prediction 0.410573444895822 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57758674 chr16:57758673 nonsynonymous SNV 0.393 4 20 hm7G_associated_SNPs_32822 0 0 0 0 1 DRC7 chr16:57758747 5'GT 57758747 Upstream 75bp 30139 chr11 67196455 67196455 1 + C T PAAD 67196456 + 67196436 67196476 41 CCCTCGGTTTCTCACAGGACGCATGTCCCCTTGCCGAGTTG CCCTCGGTTTCTCACAGGATGCATGTCCCCTTGCCGAGTTG < 41bp 0.51386057098994 0.719146764842408 NA NA prediction 0.410572387704937 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67196456 chr11:67196455 synonymous SNV . 0 20 hm7G_associated_SNPs_32823 0 0 1 0 1 RPS6KB2 chr11:67196453 3'AG 67196453 Downstream 3bp 30140 chr22 41305152 41305152 1 + C T STAD 41305153 + 41305133 41305173 41 TTGAATGCCGGGCTCGTGGCGCAGACATTTTAGCCTATCCA TTGAATGCCGGGCTCGTGGTGCAGACATTTTAGCCTATCCA < 41bp 0.48798182186662 0.70528440690378 NA NA prediction 0.41056881380756 Functional Gain - XPNPEP3 ENSG00000196236 CDS Human protein_coding chr22:41305153 chr22:41305152 synonymous SNV . 0 20 hm7G_associated_SNPs_32824 0 0 0 1 1 XPNPEP3 chr22:41305126 3'AG 41305126 Downstream 27bp 30141 chr7 48089549 48089549 1 + G T UCEC 48089550 + 48089530 48089570 41 TGGCCCTAAGAATCCTGCAGGAAGTAGACTCTCCTTCCCCC TGGCCCTAAGAATCCTGCATGAAGTAGACTCTCCTTCCCCC < 41bp 0.367551506947783 0.705282953789771 NA NA prediction 0.410565907579542 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48089550 chr7:48089549 stopgain 0.020 0 20 hm7G_associated_SNPs_32826 0 0 0 0 2 C7orf57 chr7:48089477 3'AG 48089477 Downstream 73bp 30142 chr7 48089549 48089549 1 + G T UCEC 48089550 + 48089530 48089570 41 TGGCCCTAAGAATCCTGCAGGAAGTAGACTCTCCTTCCCCC TGGCCCTAAGAATCCTGCATGAAGTAGACTCTCCTTCCCCC < 41bp 0.367551506947783 0.705282953789771 NA NA prediction 0.410565907579542 Functional Gain - C7orf57 ENSG00000164746 CDS Human protein_coding chr7:48089550 chr7:48089549 stopgain 0.020 0 20 hm7G_associated_SNPs_32826 0 0 0 0 2 C7orf57 chr7:48089574 5'GT 48089574 Upstream 26bp 30143 chrX 153631649 153631649 1 - G A GBM 153631648 - 153631628 153631668 41 AGGAGCTGAACGCCCTCTACGATGTGTTTCTGGAGGTCTCC AGGAGCTGAACGCCCTCTATGATGTGTTTCTGGAGGTCTCC < 41bp 0.518180471568467 0.723463129823582 NA NA prediction 0.410565316510229 Functional Gain - DNASE1L1 ENSG00000013563;ENSG00000147403 CDS Human other chrX:153631648 chrX:153631649 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_32828 0 0 0 0 2 DNASE1L1 chrX:153631610 5'GT 153631610 Upstream 40bp 30144 chrX 153631649 153631649 1 - G A GBM 153631648 - 153631628 153631668 41 AGGAGCTGAACGCCCTCTACGATGTGTTTCTGGAGGTCTCC AGGAGCTGAACGCCCTCTATGATGTGTTTCTGGAGGTCTCC < 41bp 0.518180471568467 0.723463129823582 NA NA prediction 0.410565316510229 Functional Gain - DNASE1L1 ENSG00000013563;ENSG00000147403 CDS Human other chrX:153631648 chrX:153631649 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_32828 0 0 0 0 2 DNASE1L1 chrX:153631722 3'AG 153631722 Downstream 74bp 30145 chr8 121222051 121222051 1 + C T HNSC 121222052 + 121222032 121222072 41 CGTGACTGAGAACAGCATGCGAGTCAAATGGGATGCAGTGC CGTGACTGAGAACAGCATGTGAGTCAAATGGGATGCAGTGC < 41bp 0.523406676503918 0.728688966745512 NA NA prediction 0.410564580483188 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121222052 chr8:121222051 stopgain 0.127 0 20 hm7G_associated_SNPs_32830 0 0 0 0 2 COL14A1 chr8:121221995 3'AG 121221995 Downstream 57bp 30146 chr8 121222051 121222051 1 + C T HNSC 121222052 + 121222032 121222072 41 CGTGACTGAGAACAGCATGCGAGTCAAATGGGATGCAGTGC CGTGACTGAGAACAGCATGTGAGTCAAATGGGATGCAGTGC < 41bp 0.523406676503918 0.728688966745512 NA NA prediction 0.410564580483188 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121222052 chr8:121222051 stopgain 0.127 0 20 hm7G_associated_SNPs_32830 0 0 0 0 2 COL14A1 chr8:121222140 5'GT 121222140 Upstream 90bp 30147 chr19 3150197 3150197 1 + G A rs375875879 3150198 + 3150178 3150218 41 TTGAGAAGCGCTACGCTGCGGCCATGCAGTGGCTGTGGAGG TTGAGAAGCGCTACGCTGCAGCCATGCAGTGGCTGTGGAGG < 41bp 0.57281197891946 0.778093168214976 NA NA prediction 0.410562378591032 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3150198 chr19:3150197 synonymous SNV . 0 20 hm7G_associated_SNPs_32832 0 0 0 0 2 GNA15 chr19:3150129 3'AG 3150129 Downstream 69bp 30148 chr19 3150197 3150197 1 + G A rs375875879 3150198 + 3150178 3150218 41 TTGAGAAGCGCTACGCTGCGGCCATGCAGTGGCTGTGGAGG TTGAGAAGCGCTACGCTGCAGCCATGCAGTGGCTGTGGAGG < 41bp 0.57281197891946 0.778093168214976 NA NA prediction 0.410562378591032 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3150198 chr19:3150197 synonymous SNV . 0 20 hm7G_associated_SNPs_32832 0 0 0 0 2 GNA15 chr19:3150283 5'GT 3150283 Upstream 87bp 30149 chr19 39589259 39589259 1 + C T COAD 39589260 + 39589240 39589280 41 GCGGAAGCTCTACATACACCGAGTCACGCTTCGCAAGCTGC GCGGAAGCTCTACATACACTGAGTCACGCTTCGCAAGCTGC < 41bp 0.528601332035186 0.733881298593493 NA NA prediction 0.410559933116615 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589260 chr19:39589259 stopgain 0.880 1 20 hm7G_associated_SNPs_32834 0 0 0 0 1 ACP7 chr19:39589298 5'GT 39589298 Upstream 40bp 30150 chr12 58004050 58004050 1 + G A LUSC 58004051 + 58004031 58004071 41 GCACTGACCGGATACTGGGGGTCATGGGGGGCATGCTGCGC GCACTGACCGGATACTGGGAGTCATGGGGGGCATGCTGCGC < 41bp 0.557772993318789 0.763052291330033 NA NA prediction 0.410558596022487 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58004051 chr12:58004050 synonymous SNV . 0 20 hm7G_associated_SNPs_32835 0 0 0 0 1 ARHGEF25 chr12:58004098 5'GT 58004098 Upstream 49bp 30151 chr19 16980360 16980360 1 + C T UCEC 16980361 + 16980341 16980381 41 ACCGGCAGATCCTGGAGGACGCAGCAGCGCTCATCAGCTAC ACCGGCAGATCCTGGAGGATGCAGCAGCGCTCATCAGCTAC < 41bp 0.520569415843706 0.725844242995062 NA NA prediction 0.410549654302714 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16980361 chr19:16980360 synonymous SNV . 0 20 hm7G_associated_SNPs_32839 0 0 1 0 1 SIN3B chr19:16980271 3'AG 16980271 Downstream 90bp 30152 chr1 55074722 55074722 1 + G T UCEC 55074723 + 55074703 55074743 41 AGTTCTACACCACCTTCAAGGCTTGTGAGCAGTTTCTCTTG AGTTCTACACCACCTTCAATGCTTGTGAGCAGTTTCTCTTG < 41bp 0.369973586049501 0.705274692979384 NA NA prediction 0.410549385958769 Functional Gain - ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55074723 chr1:55074722 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_32840 0 0 0 0 1 ACOT11 chr1:55074630 3'AG 55074630 Downstream 93bp 30153 chr1 78324644 78324644 1 + C T COAD 78324645 + 78324625 78324665 41 TGCAGAACACAGAGAAGTACGGCATACCTACAGCCTGGAGT TGCAGAACACAGAGAAGTATGGCATACCTACAGCCTGGAGT < 41bp 0.522068381139968 0.727342681537323 NA NA prediction 0.410548600794711 Functional Gain - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78324645 chr1:78324644 nonsynonymous SNV 0.011 3 20 hm7G_associated_SNPs_32841 0 0 1 0 2 MIGA1 chr1:78324623 3'AG 78324623 Downstream 22bp 30154 chr1 78324644 78324644 1 + C T COAD 78324645 + 78324625 78324665 41 TGCAGAACACAGAGAAGTACGGCATACCTACAGCCTGGAGT TGCAGAACACAGAGAAGTATGGCATACCTACAGCCTGGAGT < 41bp 0.522068381139968 0.727342681537323 NA NA prediction 0.410548600794711 Functional Gain - MIGA1 ENSG00000180488 CDS Human protein_coding chr1:78324645 chr1:78324644 nonsynonymous SNV 0.011 3 20 hm7G_associated_SNPs_32841 0 0 1 0 2 MIGA1 chr1:78324741 5'GT 78324741 Upstream 98bp 30155 chr13 111870179 111870179 1 + C T COAD 111870180 + 111870160 111870200 41 GGAGGGCACACTCAACGGCCGGACCGGCTGGTTCCCCAGCA GGAGGGCACACTCAACGGCTGGACCGGCTGGTTCCCCAGCA < 41bp 0.528978168945346 0.734252438627517 NA NA prediction 0.410548539364343 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111870180 chr13:111870179 nonsynonymous SNV 0.377 4 20 hm7G_associated_SNPs_32842 0 0 1 0 1 ARHGEF7 chr13:111870227 5'GT 111870227 Upstream 49bp 30156 chr12 3120212 3120212 1 + G A THYM 3120213 + 3120193 3120233 41 TACATCAAGCTCCGGACAGGGAAGACCCGCACCAGGAAGCA TACATCAAGCTCCGGACAGAGAAGACCCGCACCAGGAAGCA < 41bp 0.539575033839444 0.744848937366391 NA NA prediction 0.410547807053894 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3120213 chr12:3120212 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32843 0 0 1 0 2 TEAD4 chr12:3120170 3'AG 3120170 Downstream 43bp 30157 chr12 3120212 3120212 1 + G A THYM 3120213 + 3120193 3120233 41 TACATCAAGCTCCGGACAGGGAAGACCCGCACCAGGAAGCA TACATCAAGCTCCGGACAGAGAAGACCCGCACCAGGAAGCA < 41bp 0.539575033839444 0.744848937366391 NA NA prediction 0.410547807053894 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3120213 chr12:3120212 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_32843 0 0 1 0 2 TEAD4 chr12:3120234 5'GT 3120234 Upstream 23bp 30158 chr1 205038648 205038648 1 + G A LUSC 205038649 + 205038629 205038669 41 GGCACCCTCAGGACTCAGCGGAGGAGGTGGAGCCCCCGGAG GGCACCCTCAGGACTCAGCAGAGGAGGTGGAGCCCCCGGAG < 41bp 0.516997286486165 0.722266337257911 NA NA prediction 0.410538101543492 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205038649 chr1:205038648 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_32846 0 0 0 0 2 CNTN2 chr1:205038619 3'AG 205038619 Downstream 30bp 30159 chr1 205038648 205038648 1 + G A LUSC 205038649 + 205038629 205038669 41 GGCACCCTCAGGACTCAGCGGAGGAGGTGGAGCCCCCGGAG GGCACCCTCAGGACTCAGCAGAGGAGGTGGAGCCCCCGGAG < 41bp 0.516997286486165 0.722266337257911 NA NA prediction 0.410538101543492 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205038649 chr1:205038648 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_32846 0 0 0 0 2 CNTN2 chr1:205038689 5'GT 205038689 Upstream 42bp 30160 chr14 89034484 89034484 1 + C T READ 89034485 + 89034465 89034505 41 TCTAGGGAACAACACAATTCGATTCACCGTATGGTATGTTT TCTAGGGAACAACACAATTTGATTCACCGTATGGTATGTTT < 41bp 0.507249250281381 0.712517446581357 NA NA prediction 0.410536392599951 Functional Gain - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89034485 chr14:89034484 stopgain 0.999 1 20 hm7G_associated_SNPs_32848 0 0 1 0 1 ZC3H14 chr14:89034497 5'GT 89034497 Upstream 14bp 30161 chr19 41086747 41086747 1 + G A BLCA 41086748 + 41086728 41086768 41 ACAGCCCGGGTGCATGGTGGGGCTTTGGGTGAACATGACAA ACAGCCCGGGTGCATGGTGAGGCTTTGGGTGAACATGACAA < 41bp 0.571703415600839 0.77697080148733 NA NA prediction 0.410534771772981 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41086748 chr19:41086747 nonsynonymous SNV 0.815 3 20 hm7G_associated_SNPs_32849 0 0 0 0 2 SHKBP1 chr19:41086652 3'AG 41086652 Downstream 96bp 30162 chr19 41086747 41086747 1 + G A BLCA 41086748 + 41086728 41086768 41 ACAGCCCGGGTGCATGGTGGGGCTTTGGGTGAACATGACAA ACAGCCCGGGTGCATGGTGAGGCTTTGGGTGAACATGACAA < 41bp 0.571703415600839 0.77697080148733 NA NA prediction 0.410534771772981 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41086748 chr19:41086747 nonsynonymous SNV 0.815 3 20 hm7G_associated_SNPs_32849 0 0 0 0 2 SHKBP1 chr19:41086842 5'GT 41086842 Upstream 96bp 30163 chr16 11114129 11114129 1 + G A rs76611790 11114130 + 11114110 11114150 41 TGCAGGAGCAGAACACCACGGACGAGGAGAAAAGCGCCGCC TGCAGGAGCAGAACACCACAGACGAGGAGAAAAGCGCCGCC < 41bp 0.513541821602587 0.718803295349867 NA NA prediction 0.41052294749456 Functional Gain - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11114130 chr16:11114129 synonymous SNV . 0 20 hm7G_associated_SNPs_32852 0 0 1 0 2 CLEC16A chr16:11114050 3'AG 11114050 Downstream 80bp 30164 chr16 11114129 11114129 1 + G A rs76611790 11114130 + 11114110 11114150 41 TGCAGGAGCAGAACACCACGGACGAGGAGAAAAGCGCCGCC TGCAGGAGCAGAACACCACAGACGAGGAGAAAAGCGCCGCC < 41bp 0.513541821602587 0.718803295349867 NA NA prediction 0.41052294749456 Functional Gain - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11114130 chr16:11114129 synonymous SNV . 0 20 hm7G_associated_SNPs_32852 0 0 1 0 2 CLEC16A chr16:11114182 5'GT 11114182 Upstream 54bp 30165 chr1 15873341 15873341 1 + C T GBM 15873342 + 15873322 15873362 41 GTCCTTCTGTTTGACCAAACGCCCATTGTGCCACTGTTATA GTCCTTCTGTTTGACCAAATGCCCATTGTGCCACTGTTATA < 41bp 0.500548645795547 0.705808451077717 NA NA prediction 0.410519610564339 Functional Gain - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15873342 chr1:15873341 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_32853 0 0 1 0 2 DNAJC16 chr1:15873262 3'AG 15873262 Downstream 80bp 30166 chr1 15873341 15873341 1 + C T GBM 15873342 + 15873322 15873362 41 GTCCTTCTGTTTGACCAAACGCCCATTGTGCCACTGTTATA GTCCTTCTGTTTGACCAAATGCCCATTGTGCCACTGTTATA < 41bp 0.500548645795547 0.705808451077717 NA NA prediction 0.410519610564339 Functional Gain - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15873342 chr1:15873341 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_32853 0 0 1 0 2 DNAJC16 chr1:15873366 5'GT 15873366 Upstream 26bp 30167 chr2 71188128 71188128 1 + C T COAD 71188129 + 71188109 71188149 41 ATTACCATGACGACAACTTCGCCATCGTCTTTGCAGCCATG ATTACCATGACGACAACTTTGCCATCGTCTTTGCAGCCATG < 41bp 0.539470844660039 0.744730030436857 NA NA prediction 0.410518371553636 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71188129 chr2:71188128 synonymous SNV . 0 20 hm7G_associated_SNPs_32854 0 0 0 1 2 ATP6V1B1 chr2:71188051 3'AG 71188051 Downstream 78bp 30168 chr2 71188128 71188128 1 + C T COAD 71188129 + 71188109 71188149 41 ATTACCATGACGACAACTTCGCCATCGTCTTTGCAGCCATG ATTACCATGACGACAACTTTGCCATCGTCTTTGCAGCCATG < 41bp 0.539470844660039 0.744730030436857 NA NA prediction 0.410518371553636 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71188129 chr2:71188128 synonymous SNV . 0 20 hm7G_associated_SNPs_32854 0 0 0 1 2 ATP6V1B1 chr2:71188152 5'GT 71188152 Upstream 25bp 30169 chr12 111779618 111779618 1 + C T STAD 111779619 + 111779599 111779639 41 GCTATGGCCTCATCAGCACCGGCTCAGACAGTGAGTCCCCG GCTATGGCCTCATCAGCACTGGCTCAGACAGTGAGTCCCCG < 41bp 0.495420521140469 0.705258016371046 NA NA prediction 0.410516032742092 Functional Gain - CUX2 ENSG00000111249 CDS Human protein_coding chr12:111779619 chr12:111779618 synonymous SNV . 0 20 hm7G_associated_SNPs_32855 0 0 0 0 1 CUX2 chr12:111779584 3'AG 111779584 Downstream 35bp 30170 chr1 9781280 9781280 1 + C T STAD 9781281 + 9781261 9781301 41 ATTGCCACGTAGGCTCCTTCGCCATCAAGTCGCTGCGGAAA ATTGCCACGTAGGCTCCTTTGCCATCAAGTCGCTGCGGAAA < 41bp 0.52415915687107 0.729417050640574 NA NA prediction 0.410515787539007 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781281 chr1:9781280 synonymous SNV . 0 20 hm7G_associated_SNPs_32856 0 0 0 0 2 PIK3CD chr1:9781185 3'AG 9781185 Downstream 96bp 30171 chr1 9781280 9781280 1 + C T STAD 9781281 + 9781261 9781301 41 ATTGCCACGTAGGCTCCTTCGCCATCAAGTCGCTGCGGAAA ATTGCCACGTAGGCTCCTTTGCCATCAAGTCGCTGCGGAAA < 41bp 0.52415915687107 0.729417050640574 NA NA prediction 0.410515787539007 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9781281 chr1:9781280 synonymous SNV . 0 20 hm7G_associated_SNPs_32856 0 0 0 0 2 PIK3CD chr1:9781306 5'GT 9781306 Upstream 27bp 30172 chr17 62080240 62080240 1 - G A UCEC 62080239 - 62080219 62080259 41 ATCATAGTCACGGTGGTGTCGGTGTTGCTGTCCCTGTTCGT ATCATAGTCACGGTGGTGTTGGTGTTGCTGTCCCTGTTCGT < 41bp 0.511870337715044 0.717128067391168 NA NA prediction 0.410515459352247 Functional Gain - ICAM2 ENSG00000108622 CDS Human protein_coding chr17:62080239 chr17:62080240 nonsynonymous SNV 0.033 1 20 hm7G_associated_SNPs_32857 0 0 1 0 1 ICAM2 chr17:62080285 3'AG 62080285 Downstream 46bp 30173 chr7 128490916 128490916 1 + G A SKCM 128490917 + 128490897 128490937 41 CATCACCGACAACAAGGACGGCACCATCACGGTGAGGTATG CATCACCGACAACAAGGACAGCACCATCACGGTGAGGTATG < 41bp 0.492615307358373 0.705256480559432 NA NA prediction 0.410512961118865 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490917 chr7:128490916 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_32859 0 0 0 0 2 FLNC chr7:128490857 3'AG 128490857 Downstream 60bp 30174 chr7 128490916 128490916 1 + G A SKCM 128490917 + 128490897 128490937 41 CATCACCGACAACAAGGACGGCACCATCACGGTGAGGTATG CATCACCGACAACAAGGACAGCACCATCACGGTGAGGTATG < 41bp 0.492615307358373 0.705256480559432 NA NA prediction 0.410512961118865 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490917 chr7:128490916 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_32859 0 0 0 0 2 FLNC chr7:128490997 5'GT 128490997 Upstream 82bp 30175 chrX 153695908 153695908 1 + G A rs60361517 153695909 + 153695889 153695929 41 GCAAGAACCTGATTCCCGCGGCAGCCGGCAGCTCCCGCCTC GCAAGAACCTGATTCCCGCAGCAGCCGGCAGCTCCCGCCTC < 41bp 0.473695032825835 0.705254323769979 NA NA prediction 0.410508647539958 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695909 chrX:153695908 synonymous SNV . 0 20 hm7G_associated_SNPs_32862 0 0 1 0 1 PLXNA3 chrX:153695888 3'AG 153695888 Downstream 21bp 30176 chr12 132237712 132237712 1 + G A STAD 132237713 + 132237693 132237733 41 CTACTACATGCTACCGGACGGCACTTACTGCCTGGCGCCGC CTACTACATGCTACCGGACAGCACTTACTGCCTGGCGCCGC < 41bp 0.520005852824981 0.725259024354618 NA NA prediction 0.410506343059273 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132237713 chr12:132237712 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_32863 0 0 1 0 1 SFSWAP chr12:132237668 3'AG 132237668 Downstream 45bp 30177 chr10 70404525 70404525 1 + G T UCEC 70404526 + 70404506 70404546 41 TACAGTAGATGTGGTCATGGGGAAGAACAAAAATTGGAATT TACAGTAGATGTGGTCATGTGGAAGAACAAAAATTGGAATT < 41bp 0.403843144912411 0.705252920600914 NA NA prediction 0.410505841201828 Functional Gain - TET1 ENSG00000138336 CDS Human protein_coding chr10:70404526 chr10:70404525 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_32864 0 0 0 0 1 TET1 chr10:70404455 3'AG 70404455 Downstream 71bp 30178 chr1 17256820 17256820 1 + C T rs148377063 17256821 + 17256801 17256841 41 CCTGGAAAGCGCCCTCATCCGGCTGGAGGAGGAGCAGCAGA CCTGGAAAGCGCCCTCATCTGGCTGGAGGAGGAGCAGCAGA < 41bp 0.515875833972722 0.721128419266484 NA NA prediction 0.410505170587524 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17256821 chr1:17256820 nonsynonymous SNV 0.355 3 20 hm7G_associated_SNPs_32865 0 0 0 0 2 CROCC chr1:17256781 3'AG 17256781 Downstream 40bp 30179 chr1 17256820 17256820 1 + C T rs148377063 17256821 + 17256801 17256841 41 CCTGGAAAGCGCCCTCATCCGGCTGGAGGAGGAGCAGCAGA CCTGGAAAGCGCCCTCATCTGGCTGGAGGAGGAGCAGCAGA < 41bp 0.515875833972722 0.721128419266484 NA NA prediction 0.410505170587524 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17256821 chr1:17256820 nonsynonymous SNV 0.355 3 20 hm7G_associated_SNPs_32865 0 0 0 0 2 CROCC chr1:17256842 5'GT 17256842 Upstream 23bp 30180 chr8 27291621 27291621 1 + C T HNSC 27291622 + 27291602 27291642 41 CTTCCTAGATGGTGAGAAGCGGAACAGCCTGCCCCAGATCC CTTCCTAGATGGTGAGAAGTGGAACAGCCTGCCCCAGATCC < 41bp 0.490597091420717 0.705251423711239 NA NA prediction 0.410502847422478 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27291622 chr8:27291621 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_32867 0 0 1 0 2 PTK2B chr8:27291610 3'AG 27291610 Downstream 12bp 30181 chr8 27291621 27291621 1 + C T HNSC 27291622 + 27291602 27291642 41 CTTCCTAGATGGTGAGAAGCGGAACAGCCTGCCCCAGATCC CTTCCTAGATGGTGAGAAGTGGAACAGCCTGCCCCAGATCC < 41bp 0.490597091420717 0.705251423711239 NA NA prediction 0.410502847422478 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27291622 chr8:27291621 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_32867 0 0 1 0 2 PTK2B chr8:27291649 5'GT 27291649 Upstream 29bp 30182 chr5 180480213 180480213 1 + C T rs145061568 180480214 + 180480194 180480234 41 TTCCAGACGTGTTCGTACCCGGAGCCTCTGCGTGGAAGAGC TTCCAGACGTGTTCGTACCTGGAGCCTCTGCGTGGAAGAGC < 41bp 0.50274151685653 0.707992739282242 NA NA prediction 0.410502444851424 Functional Gain - BTNL9 ENSG00000165810 CDS Human protein_coding chr5:180480214 chr5:180480213 synonymous SNV . 0 20 hm7G_associated_SNPs_32868 0 0 1 0 1 BTNL9 chr5:180480200 3'AG 180480200 Downstream 14bp 30183 chr12 104086619 104086619 1 + C T rs146582962 104086620 + 104086600 104086640 41 TTGAAGGGGCCTCCATTGTCGATGGGGACAACGCAGCCACA TTGAAGGGGCCTCCATTGTTGATGGGGACAACGCAGCCACA < 41bp 0.502498567194529 0.70774757854686 NA NA prediction 0.410498022704661 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104086620 chr12:104086619 synonymous SNV . 0 20 hm7G_associated_SNPs_32871 0 0 0 0 2 STAB2 chr12:104086590 3'AG 104086590 Downstream 30bp 30184 chr12 104086619 104086619 1 + C T rs146582962 104086620 + 104086600 104086640 41 TTGAAGGGGCCTCCATTGTCGATGGGGACAACGCAGCCACA TTGAAGGGGCCTCCATTGTTGATGGGGACAACGCAGCCACA < 41bp 0.502498567194529 0.70774757854686 NA NA prediction 0.410498022704661 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104086620 chr12:104086619 synonymous SNV . 0 20 hm7G_associated_SNPs_32871 0 0 0 0 2 STAB2 chr12:104086667 5'GT 104086667 Upstream 49bp 30185 chr5 1036407 1036407 1 + G A CESC 1036408 + 1036388 1036428 41 CCCCAGCCCTGCTCGGAGCGGGGGCCCTACTGCGTGGACGA CCCCAGCCCTGCTCGGAGCAGGGGCCCTACTGCGTGGACGA < 41bp 0.550679279719657 0.755925428260076 NA NA prediction 0.410492297080839 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036408 chr5:1036407 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_32872 0 0 0 0 2 NKD2 chr5:1036372 3'AG 1036372 Downstream 36bp 30186 chr5 1036407 1036407 1 + G A CESC 1036408 + 1036388 1036428 41 CCCCAGCCCTGCTCGGAGCGGGGGCCCTACTGCGTGGACGA CCCCAGCCCTGCTCGGAGCAGGGGCCCTACTGCGTGGACGA < 41bp 0.550679279719657 0.755925428260076 NA NA prediction 0.410492297080839 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1036408 chr5:1036407 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_32872 0 0 0 0 2 NKD2 chr5:1036499 5'GT 1036499 Upstream 93bp 30187 chr2 157426047 157426047 1 + C T COAD 157426048 + 157426028 157426068 41 AGGATTATGGACTTGAAAGCGAGGTGAGTGTGCATTGCCAC AGGATTATGGACTTGAAAGTGAGGTGAGTGTGCATTGCCAC < 41bp 0.52044170930731 0.725683706245323 NA NA prediction 0.410483993876027 Functional Gain - GPD2 ENSG00000115159 CDS Human protein_coding chr2:157426048 chr2:157426047 synonymous SNV . 0 20 hm7G_associated_SNPs_32875 0 0 1 0 1 GPD2 chr2:157426050 5'GT 157426050 Upstream 4bp 30188 chr11 63988045 63988045 1 + G A rs3802932 63988046 + 63988026 63988066 41 GCACGGGCAGTGGGGGCCCGGGCAACCACCCCCACGGCCCT GCACGGGCAGTGGGGGCCCAGGCAACCACCCCCACGGCCCT < 41bp 0.471328167183559 0.705241012183911 NA NA prediction 0.410482024367823 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63988046 chr11:63988045 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_32876 0 1 1 0 1 FERMT3 chr11:63988141 5'GT 63988141 Upstream 97bp 30189 chr15 58840674 58840674 1 + G A SKCM 58840675 + 58840655 58840695 41 TGTGCCTGAGCTGCAAGAAGGGCCGCTGCAACACGCTGGGC TGTGCCTGAGCTGCAAGAAAGGCCGCTGCAACACGCTGGGC < 41bp 0.556168878294062 0.761407491027692 NA NA prediction 0.41047722546726 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58840675 chr15:58840674 synonymous SNV . 0 20 hm7G_associated_SNPs_32878 0 0 1 0 1 LIPC chr15:58840771 5'GT 58840771 Upstream 98bp 30190 chr2 204801547 204801547 1 + G T STAD 204801548 + 204801528 204801568 41 TCTGGCAAACATGAAGTCAGGCCTCTGGTATTTCTTTCTCT TCTGGCAAACATGAAGTCATGCCTCTGGTATTTCTTTCTCT < 41bp 0.394784965216061 0.705238448315498 NA NA prediction 0.410476896630996 Functional Gain - ICOS ENSG00000163600 CDS Human protein_coding chr2:204801548 chr2:204801547 nonsynonymous SNV 0.545 0 20 hm7G_associated_SNPs_32879 0 0 0 0 1 ICOS chr2:204801595 5'GT 204801595 Upstream 49bp 30191 chr2 150294272 150294272 1 + C T UCEC 150294273 + 150294253 150294293 41 CTGCTCCTGAGCCTGCTGGCGGATTGTCTGAAAGCTGCTCA CTGCTCCTGAGCCTGCTGGTGGATTGTCTGAAAGCTGCTCA < 41bp 0.545756271867238 0.750994669134759 NA NA prediction 0.410476794535041 Functional Gain - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150294273 chr2:150294272 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_32880 0 0 1 0 1 LYPD6 chr2:150294340 5'GT 150294340 Upstream 69bp 30192 chr16 81944258 81944258 1 + C T COAD 81944259 + 81944239 81944279 41 CTACCGCGAGACGCACCTGCGCTGCGCCGAGTTCGAGCTGC CTACCGCGAGACGCACCTGTGCTGCGCCGAGTTCGAGCTGC < 41bp 0.542877006449164 0.748114577472493 NA NA prediction 0.410475142046657 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81944259 chr16:81944258 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_32881 0 0 0 0 1 PLCG2 chr16:81944325 5'GT 81944325 Upstream 68bp 30193 chr9 136403509 136403509 1 + C T STAD 136403510 + 136403490 136403530 41 CCCGGGAACAGGACCTGCACGGGCACGTCCAAGCGGTACCA CCCGGGAACAGGACCTGCATGGGCACGTCCAAGCGGTACCA < 41bp 0.513872691810683 0.719108017653431 NA NA prediction 0.410470651685495 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136403510 chr9:136403509 nonsynonymous SNV 0.109 2 20 hm7G_associated_SNPs_32883 0 0 0 0 2 ADAMTSL2 chr9:136403471 3'AG 136403471 Downstream 39bp 30194 chr9 136403509 136403509 1 + C T STAD 136403510 + 136403490 136403530 41 CCCGGGAACAGGACCTGCACGGGCACGTCCAAGCGGTACCA CCCGGGAACAGGACCTGCATGGGCACGTCCAAGCGGTACCA < 41bp 0.513872691810683 0.719108017653431 NA NA prediction 0.410470651685495 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136403510 chr9:136403509 nonsynonymous SNV 0.109 2 20 hm7G_associated_SNPs_32883 0 0 0 0 2 ADAMTSL2 chr9:136403546 5'GT 136403546 Upstream 38bp 30195 chr7 150839043 150839043 1 + C T CESC 150839044 + 150839024 150839064 41 CTGGGCAGACGTGGCACTTCGAGGCTTCAACGGCGGAGGAG CTGGGCAGACGTGGCACTTTGAGGCTTCAACGGCGGAGGAG < 41bp 0.512322399336218 0.71755590011608 NA NA prediction 0.410467001559722 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150839044 chr7:150839043 synonymous SNV . 0 20 hm7G_associated_SNPs_32885 0 0 1 0 2 AGAP3 chr7:150838985 3'AG 150838985 Downstream 59bp 30196 chr7 150839043 150839043 1 + C T CESC 150839044 + 150839024 150839064 41 CTGGGCAGACGTGGCACTTCGAGGCTTCAACGGCGGAGGAG CTGGGCAGACGTGGCACTTTGAGGCTTCAACGGCGGAGGAG < 41bp 0.512322399336218 0.71755590011608 NA NA prediction 0.410467001559722 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150839044 chr7:150839043 synonymous SNV . 0 20 hm7G_associated_SNPs_32885 0 0 1 0 2 AGAP3 chr7:150839139 5'GT 150839139 Upstream 97bp 30197 chr10 50856615 50856615 1 + C T SKCM 50856616 + 50856596 50856636 41 ACTCCCCATTCGATGGCATCGTCCTGGTGCAGTGCACTGAG ACTCCCCATTCGATGGCATTGTCCTGGTGCAGTGCACTGAG < 41bp 0.500898033899913 0.706130361784212 NA NA prediction 0.410464655768598 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50856616 chr10:50856615 synonymous SNV . 0 20 hm7G_associated_SNPs_32887 0 0 0 0 2 CHAT chr10:50856553 3'AG 50856553 Downstream 63bp 30198 chr10 50856615 50856615 1 + C T SKCM 50856616 + 50856596 50856636 41 ACTCCCCATTCGATGGCATCGTCCTGGTGCAGTGCACTGAG ACTCCCCATTCGATGGCATTGTCCTGGTGCAGTGCACTGAG < 41bp 0.500898033899913 0.706130361784212 NA NA prediction 0.410464655768598 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50856616 chr10:50856615 synonymous SNV . 0 20 hm7G_associated_SNPs_32887 0 0 0 0 2 CHAT chr10:50856653 5'GT 50856653 Upstream 39bp 30199 chrX 70339602 70339602 1 + C T LUAD 70339603 + 70339583 70339623 41 TACCCTTCCTGACACTGGTCGCAGGAAGCCCCAAGTGAACC TACCCTTCCTGACACTGGTTGCAGGAAGCCCCAAGTGAACC < 41bp 0.518811308619982 0.724043298695428 NA NA prediction 0.410463980150892 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70339603 chrX:70339602 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_32888 0 0 0 0 1 MED12 chrX:70339536 3'AG 70339536 Downstream 67bp 30200 chr20 45355584 45355584 1 + C T UCEC 45355585 + 45355565 45355605 41 TGCAACAGCTTCAACTGGGCGGCCAACCTCTTCATCAGCCT TGCAACAGCTTCAACTGGGTGGCCAACCTCTTCATCAGCCT < 41bp 0.510764768330687 0.715995840809733 NA NA prediction 0.410462144958091 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355585 chr20:45355584 nonsynonymous SNV 0.452 4 20 hm7G_associated_SNPs_32889 3 0 0 0 2 SLC2A10 chr20:45355503 3'AG 45355503 Downstream 82bp 30201 chr20 45355584 45355584 1 + C T UCEC 45355585 + 45355565 45355605 41 TGCAACAGCTTCAACTGGGCGGCCAACCTCTTCATCAGCCT TGCAACAGCTTCAACTGGGTGGCCAACCTCTTCATCAGCCT < 41bp 0.510764768330687 0.715995840809733 NA NA prediction 0.410462144958091 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355585 chr20:45355584 nonsynonymous SNV 0.452 4 20 hm7G_associated_SNPs_32889 3 0 0 0 2 SLC2A10 chr20:45355625 5'GT 45355625 Upstream 42bp 30202 chr19 48945047 48945047 1 + C T COAD 48945048 + 48945028 48945068 41 AGCTGGACGCCTTCATCTACGATGCTGCAGTGCTCAATTAC AGCTGGACGCCTTCATCTATGATGCTGCAGTGCTCAATTAC < 41bp 0.496783887104818 0.705228423274266 NA NA prediction 0.410456846548533 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48945048 chr19:48945047 synonymous SNV . 0 20 hm7G_associated_SNPs_32890 0 0 0 0 1 GRIN2D chr19:48945026 3'AG 48945026 Downstream 22bp 30203 chr9 138415144 138415144 1 + G A SKCM 138415145 + 138415125 138415165 41 ACGAGCCGGGAAAATACACGGCCGGTGAGTCCCGGGGCCTG ACGAGCCGGGAAAATACACAGCCGGTGAGTCCCGGGGCCTG < 41bp 0.574549853222809 0.779777383287793 NA NA prediction 0.410455060129969 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415145 chr9:138415144 synonymous SNV . 0 20 hm7G_associated_SNPs_32891 0 0 0 0 2 LCN1 chr9:138415078 3'AG 138415078 Downstream 67bp 30204 chr9 138415144 138415144 1 + G A SKCM 138415145 + 138415125 138415165 41 ACGAGCCGGGAAAATACACGGCCGGTGAGTCCCGGGGCCTG ACGAGCCGGGAAAATACACAGCCGGTGAGTCCCGGGGCCTG < 41bp 0.574549853222809 0.779777383287793 NA NA prediction 0.410455060129969 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415145 chr9:138415144 synonymous SNV . 0 20 hm7G_associated_SNPs_32891 0 0 0 0 2 LCN1 chr9:138415148 5'GT 138415148 Upstream 5bp 30205 chr15 69692453 69692453 1 + C T UCEC 69692454 + 69692434 69692474 41 CTGGACGCTTTGACTACATCGGTGAGTGGGCAACAGCCCTG CTGGACGCTTTGACTACATTGGTGAGTGGGCAACAGCCCTG < 41bp 0.528096852189914 0.733319548172317 NA NA prediction 0.410445391964806 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69692454 chr15:69692453 synonymous SNV . 0 20 hm7G_associated_SNPs_32895 0 0 0 0 1 PAQR5 chr15:69692454 5'GT 69692454 Upstream 2bp 30206 chr7 30831163 30831163 1 + G A rs200938852 30831164 + 30831144 30831184 41 CTGGAAAGAGCGTTCAAACGGCAGGGCAGCCAGCCCGCACC CTGGAAAGAGCGTTCAAACAGCAGGGCAGCCAGCCCGCACC < 41bp 0.548386800552402 0.753608611702169 NA NA prediction 0.410443622299535 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30831164 chr7:30831163 nonsynonymous SNV 0.400 0 20 hm7G_associated_SNPs_32896 0 0 1 0 1 MINDY4 chr7:30831190 5'GT 30831190 Upstream 28bp 30207 chr2 231235650 231235650 1 + G A SKCM 231235651 + 231235631 231235671 41 CCAGAAAGCCCGGAAGCAAGGAAGGAAAGTGACCAAGCATG CCAGAAAGCCCGGAAGCAAAGAAGGAAAGTGACCAAGCATG < 41bp 0.500691635644927 0.705911965427132 NA NA prediction 0.41044065956441 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231235651 chr2:231235650 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_32899 0 0 0 0 1 SP140L chr2:231235682 5'GT 231235682 Upstream 33bp 30208 chr19 55239129 55239129 1 + G A rs62132664 55239130 + 55239110 55239150 41 CAGGTCCCCTGGTGAAATCGGGAGAGACGGTCATCCTGCAA CAGGTCCCCTGGTGAAATCAGGAGAGACGGTCATCCTGCAA < 41bp 0.516247287919395 0.721467382293521 NA NA prediction 0.410440188748251 Functional Gain - KIR3DL3 ENSG00000242019 CDS Human protein_coding chr19:55239130 chr19:55239129 synonymous SNV . 0 20 hm7G_associated_SNPs_32900 0 0 0 0 1 KIR3DL3 chr19:55239077 3'AG 55239077 Downstream 53bp 30209 chr10 105178301 105178301 1 + C T STAD 105178302 + 105178282 105178322 41 CATCTCATCTGTCGGACCACGTTGCCAACGGCCCATTGTTA CATCTCATCTGTCGGACCATGTTGCCAACGGCCCATTGTTA < 41bp 0.496541418931805 0.705219834689756 NA NA prediction 0.410439669379511 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105178302 chr10:105178301 synonymous SNV . 0 20 hm7G_associated_SNPs_32901 0 0 1 0 1 PDCD11 chr10:105178391 5'GT 105178391 Upstream 91bp 30210 chr11 65396856 65396856 1 + C T UCEC 65396857 + 65396837 65396877 41 TGTGGATCATTCCAACACCCGCCTGGTCACACAGCTGGACA TGTGGATCATTCCAACACCTGCCTGGTCACACAGCTGGACA < 41bp 0.529621213386349 0.734839437138404 NA NA prediction 0.41043644750411 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396857 chr11:65396856 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_32902 0 0 1 0 2 PCNX3 chr11:65396828 3'AG 65396828 Downstream 29bp 30211 chr11 65396856 65396856 1 + C T UCEC 65396857 + 65396837 65396877 41 TGTGGATCATTCCAACACCCGCCTGGTCACACAGCTGGACA TGTGGATCATTCCAACACCTGCCTGGTCACACAGCTGGACA < 41bp 0.529621213386349 0.734839437138404 NA NA prediction 0.41043644750411 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65396857 chr11:65396856 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_32902 0 0 1 0 2 PCNX3 chr11:65396886 5'GT 65396886 Upstream 31bp 30212 chr21 47858159 47858159 1 + C T BLCA 47858160 + 47858140 47858180 41 CTCACAAAAGCGCTCAGCACGGTGACCCAGGAGAAGCTGGA CTCACAAAAGCGCTCAGCATGGTGACCCAGGAGAAGCTGGA < 41bp 0.524789998586653 0.730007052839043 NA NA prediction 0.41043410850478 Functional Gain - PCNT ENSG00000160299 CDS Human protein_coding chr21:47858160 chr21:47858159 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_32903 0 0 1 0 1 PCNT chr21:47858077 3'AG 47858077 Downstream 83bp 30213 chr17 29852150 29852150 1 + G A rs534139326 29852151 + 29852131 29852171 41 TGAAGGATCAGGAGACCACGGCCGAGCAGGCTCTGGAGGAG TGAAGGATCAGGAGACCACAGCCGAGCAGGCTCTGGAGGAG < 41bp 0.554006531114518 0.759223049486127 NA NA prediction 0.410433036743219 Functional Gain - RAB11FIP4 ENSG00000131242 CDS Human protein_coding chr17:29852151 chr17:29852150 synonymous SNV . 0 20 hm7G_associated_SNPs_32904 0 0 1 0 1 RAB11FIP4 chr17:29852248 5'GT 29852248 Upstream 99bp 30214 chr16 67578658 67578658 1 + C T SKCM 67578659 + 67578639 67578679 41 GGCCCTGGAGCGGCTGCTGCGGGAAGCCCGAGTACTGGAGG GGCCCTGGAGCGGCTGCTGTGGGAAGCCCGAGTACTGGAGG < 41bp 0.518430316173695 0.723644796677719 NA NA prediction 0.410428961008047 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578659 chr16:67578658 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_32905 0 0 0 0 2 RIPOR1 chr16:67578598 3'AG 67578598 Downstream 61bp 30215 chr16 67578658 67578658 1 + C T SKCM 67578659 + 67578639 67578679 41 GGCCCTGGAGCGGCTGCTGCGGGAAGCCCGAGTACTGGAGG GGCCCTGGAGCGGCTGCTGTGGGAAGCCCGAGTACTGGAGG < 41bp 0.518430316173695 0.723644796677719 NA NA prediction 0.410428961008047 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67578659 chr16:67578658 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_32905 0 0 0 0 2 RIPOR1 chr16:67578733 5'GT 67578733 Upstream 76bp 30216 chr10 7762890 7762890 1 + C T CESC 7762891 + 7762871 7762911 41 ACACATTTGAAGGCCATTTCGATGGTGTTCCGGTCATTTCT ACACATTTGAAGGCCATTTTGATGGTGTTCCGGTCATTTCT < 41bp 0.526189550428573 0.731404020472619 NA NA prediction 0.410428940088093 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762891 chr10:7762890 synonymous SNV . 0 20 hm7G_associated_SNPs_32906 0 0 0 0 2 ITIH2 chr10:7762819 3'AG 7762819 Downstream 72bp 30217 chr10 7762890 7762890 1 + C T CESC 7762891 + 7762871 7762911 41 ACACATTTGAAGGCCATTTCGATGGTGTTCCGGTCATTTCT ACACATTTGAAGGCCATTTTGATGGTGTTCCGGTCATTTCT < 41bp 0.526189550428573 0.731404020472619 NA NA prediction 0.410428940088093 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762891 chr10:7762890 synonymous SNV . 0 20 hm7G_associated_SNPs_32906 0 0 0 0 2 ITIH2 chr10:7762926 5'GT 7762926 Upstream 37bp 30218 chr17 43214804 43214804 1 + C T HNSC 43214805 + 43214785 43214825 41 CCCTGCCTCCCCAAGGAACCGGCACCCCCAAGCCCAGGTTA CCCTGCCTCCCCAAGGAACTGGCACCCCCAAGCCCAGGTTA < 41bp 0.497267537424516 0.705208381155499 NA NA prediction 0.410416762310998 Functional Gain - ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43214805 chr17:43214804 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_32914 0 0 1 0 2 ACBD4 chr17:43214735 3'AG 43214735 Downstream 70bp 30219 chr17 43214804 43214804 1 + C T HNSC 43214805 + 43214785 43214825 41 CCCTGCCTCCCCAAGGAACCGGCACCCCCAAGCCCAGGTTA CCCTGCCTCCCCAAGGAACTGGCACCCCCAAGCCCAGGTTA < 41bp 0.497267537424516 0.705208381155499 NA NA prediction 0.410416762310998 Functional Gain - ACBD4 ENSG00000181513 CDS Human protein_coding chr17:43214805 chr17:43214804 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_32914 0 0 1 0 2 ACBD4 chr17:43214821 5'GT 43214821 Upstream 18bp 30220 chr8 133816130 133816130 1 + C T CHOL 133816131 + 133816111 133816151 41 CAAAACAGGGAGTAAACCTCGAACCAGCGCTAACAGCAATA CAAAACAGGGAGTAAACCTTGAACCAGCGCTAACAGCAATA < 41bp 0.518298291090498 0.723505589087341 NA NA prediction 0.410414595993685 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133816131 chr8:133816130 stopgain 0.996 1 20 hm7G_associated_SNPs_32915 0 0 1 1 1 PHF20L1 chr8:133816064 3'AG 133816064 Downstream 67bp 30221 chr21 43711229 43711229 1 + G A SARC 43711230 + 43711210 43711250 41 GAGATGGGAGTCTTTCTTCGGGAACACCTGAACTACTGGTA GAGATGGGAGTCTTTCTTCAGGAACACCTGAACTACTGGTA < 41bp 0.51966838520239 0.724873619201142 NA NA prediction 0.410410467997504 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711230 chr21:43711229 nonsynonymous SNV 0.952 4 20 hm7G_associated_SNPs_32916 0 0 0 0 2 ABCG1 chr21:43711202 3'AG 43711202 Downstream 28bp 30222 chr21 43711229 43711229 1 + G A SARC 43711230 + 43711210 43711250 41 GAGATGGGAGTCTTTCTTCGGGAACACCTGAACTACTGGTA GAGATGGGAGTCTTTCTTCAGGAACACCTGAACTACTGGTA < 41bp 0.51966838520239 0.724873619201142 NA NA prediction 0.410410467997504 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43711230 chr21:43711229 nonsynonymous SNV 0.952 4 20 hm7G_associated_SNPs_32916 0 0 0 0 2 ABCG1 chr21:43711302 5'GT 43711302 Upstream 74bp 30223 chr1 16374433 16374433 1 + C T STAD 16374434 + 16374414 16374454 41 GAGGTGAAGACCATGTTGGCGGGTGTGGTCTTGGAGGACTA GAGGTGAAGACCATGTTGGTGGGTGTGGTCTTGGAGGACTA < 41bp 0.489849580229672 0.705205159612705 NA NA prediction 0.41041031922541 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16374434 chr1:16374433 nonsynonymous SNV 0.016 2 20 hm7G_associated_SNPs_32917 0 0 0 0 1 CLCNKB chr1:16374400 3'AG 16374400 Downstream 34bp 30224 chr2 15770224 15770224 1 + G T LUAD 15770225 + 15770205 15770245 41 TTACCTACGGTCAGAAAAGGGCTGCTGGTGGTAAGCTTTGA TTACCTACGGTCAGAAAAGTGCTGCTGGTGGTAAGCTTTGA < 41bp 0.691996002058296 0.897199620625334 NA NA prediction 0.410407237134077 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770225 chr2:15770224 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_32918 0 0 1 0 1 DDX1 chr2:15770234 5'GT 15770234 Upstream 11bp 30225 chrX 101818230 101818230 1 + G A SKCM 101818231 + 101818211 101818251 41 CTGACAGCAGCAATTCTAGGGCAAGTAGGGGCAGAGCAGTC CTGACAGCAGCAATTCTAGAGCAAGTAGGGGCAGAGCAGTC < 41bp 0.493877340321975 0.705201555897947 NA NA prediction 0.410403111795894 Functional Gain - NXF4 ENSG00000196970 ncRNA_exonic Human transcribed_unprocessed_pseudogene chrX:101818231 chrX:101818230 . . 0 20 hm7G_associated_SNPs_32920 0 0 0 0 1 NXF4 chrX:101818135 3'AG 101818135 Downstream 96bp 30226 chr16 334665 334665 1 + G A rs11863142 334666 + 334646 334686 41 GGACTCCCTGCAGGACCACGGGACGCTGAGGGCATTGCCGA GGACTCCCTGCAGGACCACAGGACGCTGAGGGCATTGCCGA < 41bp 0.591953518441794 0.797154717550576 NA NA prediction 0.410402398217563 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:334666 chr16:334665 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_32921 0 0 0 0 1 PDIA2 chr16:334659 3'AG 334659 Downstream 7bp 30227 chr7 50607616 50607616 1 + G A SKCM 50607617 + 50607597 50607637 41 GCATCCGGACCCTCACCCAGGAGAAGCCGATGCAGCCAATG GCATCCGGACCCTCACCCAAGAGAAGCCGATGCAGCCAATG < 41bp 0.481407605358655 0.705201040345259 NA NA prediction 0.410402080690517 Functional Gain - DDC ENSG00000132437 CDS Human antisense chr7:50607617 chr7:50607616 synonymous SNV . 0 20 hm7G_associated_SNPs_32922 0 0 0 0 1 DDC-AS1 chr7:50607529 3'AG 50607529 Downstream 88bp 30228 chr10 102510548 102510548 1 + C T GBM 102510549 + 102510529 102510569 41 CAAGATTGCTGAATACAAACGACAGAACCCGACTATGTTCG CAAGATTGCTGAATACAAATGACAGAACCCGACTATGTTCG < 41bp 0.528057417684892 0.7332577302208 NA NA prediction 0.410400625071815 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102510549 chr10:102510548 stopgain 0.976 1 20 hm7G_associated_SNPs_32923 0 0 0 0 1 PAX2 chr10:102510451 3'AG 102510451 Downstream 98bp 30229 chrX 149613801 149613801 1 + C T COAD 149613802 + 149613782 149613822 41 AATGGATGACTGGAAAAGTCGGCTTGTAATCAAGAGCATGC AATGGATGACTGGAAAAGTTGGCTTGTAATCAAGAGCATGC < 41bp 0.518984048058691 0.724181801841802 NA NA prediction 0.410395507566223 Functional Gain - MAMLD1 ENSG00000013619 CDS Human protein_coding chrX:149613802 chrX:149613801 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_32925 0 0 0 0 1 MAMLD1 chrX:149613878 5'GT 149613878 Upstream 78bp 30230 chr3 51747284 51747284 1 + C T COAD 51747285 + 51747265 51747305 41 GATGCGGCCAGTTAACGGGCGCCGCCTCTACAAGGACTTTG GATGCGGCCAGTTAACGGGTGCCGCCTCTACAAGGACTTTG < 41bp 0.506153543709779 0.711349765285075 NA NA prediction 0.410392443150591 Functional Gain - GRM2 ENSG00000164082 CDS Human protein_coding chr3:51747285 chr3:51747284 nonsynonymous SNV 0.934 4 20 hm7G_associated_SNPs_32926 0 0 0 0 1 GRM2 chr3:51747326 5'GT 51747326 Upstream 43bp 30231 chr10 72298040 72298040 1 + C T CESC 72298041 + 72298021 72298061 41 TGCCTCGGGCTGCAGTACCCGCTGGCCTTTGCCCTCAGTTT TGCCTCGGGCTGCAGTACCTGCTGGCCTTTGCCCTCAGTTT < 41bp 0.520841439851807 0.726037419974267 NA NA prediction 0.410391960244922 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72298041 chr10:72298040 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_32927 0 0 0 0 1 PALD1 chr10:72298036 3'AG 72298036 Downstream 5bp 30232 chr19 19576354 19576354 1 + C T READ 19576355 + 19576335 19576375 41 CTGAGGGCAACAGAGGCCACGGCCATGGCCATGGGCAGAGG CTGAGGGCAACAGAGGCCATGGCCATGGCCATGGGCAGAGG < 41bp 0.495669627987072 0.705194857268868 NA NA prediction 0.410389714537735 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19576355 chr19:19576354 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_32928 0 0 1 0 1 GATAD2A chr19:19576423 5'GT 19576423 Upstream 70bp 30233 chr19 11470381 11470381 1 + C T COAD 11470382 + 11470362 11470402 41 TCTACGCACTGGTCACTGCCGGGCCCACCCTCACGGTGAGA TCTACGCACTGGTCACTGCTGGGCCCACCCTCACGGTGAGA < 41bp 0.494437462882564 0.705193537600346 NA NA prediction 0.410387075200693 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11470382 chr19:11470381 synonymous SNV . 0 20 hm7G_associated_SNPs_32929 0 0 0 0 2 PLPPR2 chr19:11470283 3'AG 11470283 Downstream 99bp 30234 chr19 11470381 11470381 1 + C T COAD 11470382 + 11470362 11470402 41 TCTACGCACTGGTCACTGCCGGGCCCACCCTCACGGTGAGA TCTACGCACTGGTCACTGCTGGGCCCACCCTCACGGTGAGA < 41bp 0.494437462882564 0.705193537600346 NA NA prediction 0.410387075200693 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11470382 chr19:11470381 synonymous SNV . 0 20 hm7G_associated_SNPs_32929 0 0 0 0 2 PLPPR2 chr19:11470396 5'GT 11470396 Upstream 16bp 30235 chr6 52344529 52344529 1 + C T BLCA 52344530 + 52344510 52344550 41 AGTATTCACCAGAAGCACTCGCGTCAATTCAGAACCATGTC AGTATTCACCAGAAGCACTTGCGTCAATTCAGAACCATGTC < 41bp 0.521658525339433 0.726849721260941 NA NA prediction 0.410382391843016 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52344530 chr6:52344529 synonymous SNV . 0 20 hm7G_associated_SNPs_32930 1 0 1 0 1 EFHC1 chr6:52344585 5'GT 52344585 Upstream 57bp 30236 chr3 67049547 67049547 1 + G T UCEC 67049548 + 67049528 67049568 41 AGTTGACAGACATTGTAGTGGAAGTGGATCACGGGAAAACA AGTTGACAGACATTGTAGTTGAAGTGGATCACGGGAAAACA < 41bp 0.689427939551138 0.894618928827825 NA NA prediction 0.410381978553372 Functional Gain - KBTBD8 ENSG00000163376 CDS Human protein_coding chr3:67049548 chr3:67049547 synonymous SNV . 0 20 hm7G_associated_SNPs_32931 0 0 1 0 1 KBTBD8 chr3:67049615 5'GT 67049615 Upstream 69bp 30237 chr18 2890629 2890629 1 + G T COAD 2890630 + 2890610 2890650 41 GTACAGCACAACCAAGCTGGGGGGTAGATCCAAAAGAGGGG GTACAGCACAACCAAGCTGTGGGGTAGATCCAAAAGAGGGG < 41bp 0.368683765857524 0.705190826849509 NA NA prediction 0.410381653699018 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2890630 chr18:2890629 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_32932 0 0 0 0 1 EMILIN2 chr18:2890559 3'AG 2890559 Downstream 71bp 30238 chr17 36868952 36868952 1 + G A HNSC 36868953 + 36868933 36868973 41 TCCCTCTCCAGAGTCGAAAGGACAAAGAACGCCTTAAGCAG TCCCTCTCCAGAGTCGAAAAGACAAAGAACGCCTTAAGCAG < 41bp 0.501435648233548 0.706626267305276 NA NA prediction 0.410381238143455 Functional Gain - MLLT6 ENSG00000108292 CDS Human other chr17:36868953 chr17:36868952 synonymous SNV . 0 20 hm7G_associated_SNPs_32933 0 0 1 0 1 MLLT6 chr17:36869042 5'GT 36869042 Upstream 91bp 30239 chr3 45518045 45518045 1 + C T SKCM 45518046 + 45518026 45518066 41 ACCTCCCACGTGGCCATCTCGCCCAGCCACAGACTCCTACA ACCTCCCACGTGGCCATCTTGCCCAGCCACAGACTCCTACA < 41bp 0.53347889396299 0.738668178003435 NA NA prediction 0.410378568080891 Functional Gain - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45518046 chr3:45518045 nonsynonymous SNV 0.877 0 20 hm7G_associated_SNPs_32936 0 0 1 0 2 LARS2 chr3:45517960 3'AG 45517960 Downstream 86bp 30240 chr3 45518045 45518045 1 + C T SKCM 45518046 + 45518026 45518066 41 ACCTCCCACGTGGCCATCTCGCCCAGCCACAGACTCCTACA ACCTCCCACGTGGCCATCTTGCCCAGCCACAGACTCCTACA < 41bp 0.53347889396299 0.738668178003435 NA NA prediction 0.410378568080891 Functional Gain - LARS2 ENSG00000011376 CDS Human protein_coding chr3:45518046 chr3:45518045 nonsynonymous SNV 0.877 0 20 hm7G_associated_SNPs_32936 0 0 1 0 2 LARS2 chr3:45518119 5'GT 45518119 Upstream 75bp 30241 chr2 97492678 97492678 1 + C T UCEC 97492679 + 97492659 97492699 41 GAATATAAAGTAACAATCTCGCCTCAGCTGCTCTTGGCCAC GAATATAAAGTAACAATCTTGCCTCAGCTGCTCTTGGCCAC < 41bp 0.510511736919628 0.715700885200489 NA NA prediction 0.410378296561721 Functional Gain - CNNM3 ENSG00000168763 CDS Human protein_coding chr2:97492679 chr2:97492678 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_32937 0 0 1 0 1 CNNM3 chr2:97492719 5'GT 97492719 Upstream 42bp 30242 chr2 239010607 239010607 1 + C T BLCA 239010608 + 239010588 239010628 41 GATGCCTCGGGCGTCTCCCCGCTGCACCTGGCCGCCCGTTT GATGCCTCGGGCGTCTCCCTGCTGCACCTGGCCGCCCGTTT < 41bp 0.514642498039402 0.719831209044737 NA NA prediction 0.410377422010668 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239010608 chr2:239010607 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_32938 0 0 0 0 1 ESPNL chr2:239010582 3'AG 239010582 Downstream 26bp 30243 chr3 51664313 51664313 1 + C T STAD 51664314 + 51664294 51664334 41 TTGCTTTAAGGGCAAGTGACGGTCCCCAACTGCCTCCTCGG TTGCTTTAAGGGCAAGTGATGGTCCCCAACTGCCTCCTCGG < 41bp 0.502672556793854 0.707860823471953 NA NA prediction 0.410376533356199 Functional Gain - RAD54L2 ENSG00000164080 CDS Human protein_coding chr3:51664314 chr3:51664313 synonymous SNV . 0 20 hm7G_associated_SNPs_32939 0 0 1 0 1 RAD54L2 chr3:51664404 5'GT 51664404 Upstream 92bp 30244 chr3 52556631 52556631 1 + C T COAD 52556632 + 52556612 52556652 41 CCTTATGGTCTGAACTTTTCGGAGGCTGAGGCGGCATGCGA CCTTATGGTCTGAACTTTTTGGAGGCTGAGGCGGCATGCGA < 41bp 0.516231523785951 0.721419274132303 NA NA prediction 0.410375500692703 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52556632 chr3:52556631 nonsynonymous SNV 0.648 1 20 hm7G_associated_SNPs_32940 0 0 0 0 2 STAB1 chr3:52556571 3'AG 52556571 Downstream 61bp 30245 chr3 52556631 52556631 1 + C T COAD 52556632 + 52556612 52556652 41 CCTTATGGTCTGAACTTTTCGGAGGCTGAGGCGGCATGCGA CCTTATGGTCTGAACTTTTTGGAGGCTGAGGCGGCATGCGA < 41bp 0.516231523785951 0.721419274132303 NA NA prediction 0.410375500692703 Functional Gain - STAB1 ENSG00000010327 CDS Human protein_coding chr3:52556632 chr3:52556631 nonsynonymous SNV 0.648 1 20 hm7G_associated_SNPs_32940 0 0 0 0 2 STAB1 chr3:52556704 5'GT 52556704 Upstream 74bp 30246 chr3 53783318 53783318 1 + C T STAD 53783319 + 53783299 53783339 41 CTGTATAAAGCCATCGACTCGAATGGAGAGAACATCGGCCC CTGTATAAAGCCATCGACTTGAATGGAGAGAACATCGGCCC < 41bp 0.496372411041584 0.705187038581158 NA NA prediction 0.410374077162317 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53783319 chr3:53783318 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_32941 0 0 0 0 1 CACNA1D chr3:53783295 3'AG 53783295 Downstream 24bp 30247 chr5 156750976 156750976 1 + C T UCEC 156750977 + 156750957 156750997 41 CACTCATTGCAGACAAAAGCGGCTCCAAGAAGACCCTGAGG CACTCATTGCAGACAAAAGTGGCTCCAAGAAGACCCTGAGG < 41bp 0.527264972715094 0.732451830029625 NA NA prediction 0.410373714629061 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156750977 chr5:156750976 synonymous SNV . 0 20 hm7G_associated_SNPs_32942 0 0 1 0 1 CYFIP2 chr5:156750929 3'AG 156750929 Downstream 48bp 30248 chr1 150525382 150525382 1 + C T UCEC 150525383 + 150525363 150525403 41 TCTCTATATAGGTGTTGTCCGGACACTCTCTTCAGACACCT TCTCTATATAGGTGTTGTCTGGACACTCTCTTCAGACACCT < 41bp 0.494757448280115 0.705186561962164 NA NA prediction 0.410373123924328 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150525383 chr1:150525382 synonymous SNV . 0 20 hm7G_associated_SNPs_32944 1 0 1 0 1 ADAMTSL4 chr1:150525374 3'AG 150525374 Downstream 9bp 30249 chr6 30877747 30877747 1 + G T UCEC 30877748 + 30877728 30877768 41 GGGCTGCTGAGCGGCCTCCGGATCTGGCACACACAGCTGCT GGGCTGCTGAGCGGCCTCCTGATCTGGCACACACAGCTGCT < 41bp 0.397343247677125 0.705184447253259 NA NA prediction 0.410368894506518 Functional Gain - GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877748 chr6:30877747 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_32946 0 0 1 0 2 GTF2H4 chr6:30877709 3'AG 30877709 Downstream 39bp 30250 chr6 30877747 30877747 1 + G T UCEC 30877748 + 30877728 30877768 41 GGGCTGCTGAGCGGCCTCCGGATCTGGCACACACAGCTGCT GGGCTGCTGAGCGGCCTCCTGATCTGGCACACACAGCTGCT < 41bp 0.397343247677125 0.705184447253259 NA NA prediction 0.410368894506518 Functional Gain - GTF2H4 ENSG00000213780 CDS Human protein_coding chr6:30877748 chr6:30877747 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_32946 0 0 1 0 2 GTF2H4 chr6:30877840 5'GT 30877840 Upstream 94bp 30251 chr2 71298926 71298926 1 + C T STAD 71298927 + 71298907 71298947 41 ACTTAATCACCACCGATGCCGCCGGCTCCATCGCCACAGCT ACTTAATCACCACCGATGCTGCCGGCTCCATCGCCACAGCT < 41bp 0.559478060371621 0.764660330477385 NA NA prediction 0.410364540211527 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71298927 chr2:71298926 synonymous SNV . 0 20 hm7G_associated_SNPs_32948 0 0 1 0 2 NAGK chr2:71298957 5'GT 71298957 Upstream 32bp 30252 chr2 71298926 71298926 1 + C T STAD 71298927 + 71298907 71298947 41 ACTTAATCACCACCGATGCCGCCGGCTCCATCGCCACAGCT ACTTAATCACCACCGATGCTGCCGGCTCCATCGCCACAGCT < 41bp 0.559478060371621 0.764660330477385 NA NA prediction 0.410364540211527 Functional Gain - NAGK ENSG00000124357 CDS Human protein_coding chr2:71298927 chr2:71298926 synonymous SNV . 0 20 hm7G_associated_SNPs_32948 0 0 1 0 2 NAGK chr2:71298965 5'GT 71298965 Upstream 40bp 30253 chr16 68714935 68714935 1 + C T STAD 68714936 + 68714916 68714956 41 GGGGACGGCTCCACCACCACGGCAGTGGCAGTAGTGGAGAT GGGGACGGCTCCACCACCATGGCAGTGGCAGTAGTGGAGAT < 41bp 0.54706072461697 0.752240571628113 NA NA prediction 0.410359694022286 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68714936 chr16:68714935 nonsynonymous SNV 0.270 4 20 hm7G_associated_SNPs_32950 0 0 0 0 2 CDH3 chr16:68714871 3'AG 68714871 Downstream 65bp 30254 chr16 68714935 68714935 1 + C T STAD 68714936 + 68714916 68714956 41 GGGGACGGCTCCACCACCACGGCAGTGGCAGTAGTGGAGAT GGGGACGGCTCCACCACCATGGCAGTGGCAGTAGTGGAGAT < 41bp 0.54706072461697 0.752240571628113 NA NA prediction 0.410359694022286 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68714936 chr16:68714935 nonsynonymous SNV 0.270 4 20 hm7G_associated_SNPs_32950 0 0 0 0 2 CDH3 chr16:68714999 5'GT 68714999 Upstream 65bp 30255 chr6 35211826 35211826 1 + C T ESCA 35211827 + 35211807 35211847 41 CTACCAACCTGAAGCAGGACGGACCCTATGCTTCCCTTGTG CTACCAACCTGAAGCAGGATGGACCCTATGCTTCCCTTGTG < 41bp 0.496135942978996 0.705179272090403 NA NA prediction 0.410358544180806 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35211827 chr6:35211826 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_32951 0 0 0 0 2 SCUBE3 chr6:35211740 3'AG 35211740 Downstream 87bp 30256 chr6 35211826 35211826 1 + C T ESCA 35211827 + 35211807 35211847 41 CTACCAACCTGAAGCAGGACGGACCCTATGCTTCCCTTGTG CTACCAACCTGAAGCAGGATGGACCCTATGCTTCCCTTGTG < 41bp 0.496135942978996 0.705179272090403 NA NA prediction 0.410358544180806 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35211827 chr6:35211826 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_32951 0 0 0 0 2 SCUBE3 chr6:35211907 5'GT 35211907 Upstream 82bp 30257 chrX 152101498 152101498 1 + C T UCEC 152101499 + 152101479 152101519 41 GCTTGGCTGCAGTAGACATCGGCTCCGAGAGAGGAAGGTGA GCTTGGCTGCAGTAGACATTGGCTCCGAGAGAGGAAGGTGA < 41bp 0.511086602997683 0.716264691598797 NA NA prediction 0.410356177202228 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152101499 chrX:152101498 synonymous SNV . 0 20 hm7G_associated_SNPs_32954 0 0 0 0 2 ZNF185 chrX:152101417 3'AG 152101417 Downstream 82bp 30258 chrX 152101498 152101498 1 + C T UCEC 152101499 + 152101479 152101519 41 GCTTGGCTGCAGTAGACATCGGCTCCGAGAGAGGAAGGTGA GCTTGGCTGCAGTAGACATTGGCTCCGAGAGAGGAAGGTGA < 41bp 0.511086602997683 0.716264691598797 NA NA prediction 0.410356177202228 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152101499 chrX:152101498 synonymous SNV . 0 20 hm7G_associated_SNPs_32954 0 0 0 0 2 ZNF185 chrX:152101515 5'GT 152101515 Upstream 18bp 30259 chr19 45535834 45535834 1 + G A UCEC 45535835 + 45535815 45535855 41 AGGGCCTCCTGGGAAGGTCGGGCTGACTTCTCCCAGGCCGA AGGGCCTCCTGGGAAGGTCAGGCTGACTTCTCCCAGGCCGA < 41bp 0.565761781454088 0.770937126906621 NA NA prediction 0.410350690905068 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45535835 chr19:45535834 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_32957 0 0 0 0 1 RELB chr19:45535792 3'AG 45535792 Downstream 43bp 30260 chr4 951687 951687 1 + C T SKCM 951688 + 951668 951708 41 TGGCCGCCCTGAGTGCGACCGGGCCGCGCTTCCTGGCGTAC TGGCCGCCCTGAGTGCGACTGGGCCGCGCTTCCTGGCGTAC < 41bp 0.500709530533143 0.705883421466199 NA NA prediction 0.410347781866113 Functional Gain - TMEM175 ENSG00000127419 CDS Human protein_coding chr4:951688 chr4:951687 synonymous SNV . 0 20 hm7G_associated_SNPs_32958 0 0 0 0 1 TMEM175 chr4:951612 3'AG 951612 Downstream 76bp 30261 chr1 45271009 45271009 1 + G A COAD 45271010 + 45270990 45271030 41 TGCTGCAGTGGGTCAAGACGGATCAGGCTCTCCTCATGCTG TGCTGCAGTGGGTCAAGACAGATCAGGCTCTCCTCATGCTG < 41bp 0.514897230054757 0.720070684291919 NA NA prediction 0.410346908474325 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45271010 chr1:45271009 synonymous SNV . 0 20 hm7G_associated_SNPs_32959 0 0 0 0 1 PLK3 chr1:45271051 5'GT 45271051 Upstream 43bp 30262 chr9 34647234 34647234 1 + G A UCEC 34647235 + 34647215 34647255 41 TCAACCCTCTGTGTCCTGGGGCCATCCGAGCCAACGGAGAG TCAACCCTCTGTGTCCTGGAGCCATCCGAGCCAACGGAGAG < 41bp 0.555613491745198 0.760786642256355 NA NA prediction 0.410346301022313 Functional Gain - GALT ENSG00000213930;ENSG00000258728 CDS Human other chr9:34647235 chr9:34647234 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_32960 0 0 1 0 1 GALT chr9:34647255 5'GT 34647255 Upstream 22bp 30263 chr5 1212507 1212507 1 + G A GBM 1212508 + 1212488 1212528 41 CACGTCCATCAGCGACTCGGGCTCCATCCAGTGGTGGATGC CACGTCCATCAGCGACTCGAGCTCCATCCAGTGGTGGATGC < 41bp 0.57023932671021 0.775408673464969 NA NA prediction 0.410338693509519 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1212508 chr5:1212507 nonsynonymous SNV 0.713 5 20 hm7G_associated_SNPs_32964 0 0 0 0 1 SLC6A19 chr5:1212599 5'GT 1212599 Upstream 93bp 30264 chr14 72139159 72139159 1 + C T UCEC 72139160 + 72139140 72139180 41 AACTATGAGGGCATTGTGGCGGATGTGGAGCCCTACGGTTA AACTATGAGGGCATTGTGGTGGATGTGGAGCCCTACGGTTA < 41bp 0.539399388650276 0.744568155393837 NA NA prediction 0.410337533487123 Functional Gain - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72139160 chr14:72139159 nonsynonymous SNV 0.813 4 20 hm7G_associated_SNPs_32965 0 0 0 0 1 SIPA1L1 chr14:72139065 3'AG 72139065 Downstream 95bp 30265 chr15 29397662 29397662 1 + C T LUAD 29397663 + 29397643 29397683 41 GAGCCAATGGCATCAACCCCGAAGACTTGAGCCAGAAGGAA GAGCCAATGGCATCAACCCTGAAGACTTGAGCCAGAAGGAA < 41bp 0.540461596296825 0.745628211087196 NA NA prediction 0.410333229580741 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29397663 chr15:29397662 synonymous SNV . 0 20 hm7G_associated_SNPs_32967 0 0 1 0 2 APBA2 chr15:29397582 3'AG 29397582 Downstream 81bp 30266 chr15 29397662 29397662 1 + C T LUAD 29397663 + 29397643 29397683 41 GAGCCAATGGCATCAACCCCGAAGACTTGAGCCAGAAGGAA GAGCCAATGGCATCAACCCTGAAGACTTGAGCCAGAAGGAA < 41bp 0.540461596296825 0.745628211087196 NA NA prediction 0.410333229580741 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29397663 chr15:29397662 synonymous SNV . 0 20 hm7G_associated_SNPs_32967 0 0 1 0 2 APBA2 chr15:29397761 5'GT 29397761 Upstream 100bp 30267 chr7 73634320 73634320 1 + C T COAD 73634321 + 73634301 73634341 41 GCATGGCCAGGACCCCTGGCGGACATGGCACCCACAAGGTA GCATGGCCAGGACCCCTGGTGGACATGGCACCCACAAGGTA < 41bp 0.533382022676054 0.738548418413411 NA NA prediction 0.410332791474715 Functional Gain - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73634321 chr7:73634320 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_32969 0 0 1 0 2 LAT2 chr7:73634290 3'AG 73634290 Downstream 31bp 30268 chr7 73634320 73634320 1 + C T COAD 73634321 + 73634301 73634341 41 GCATGGCCAGGACCCCTGGCGGACATGGCACCCACAAGGTA GCATGGCCAGGACCCCTGGTGGACATGGCACCCACAAGGTA < 41bp 0.533382022676054 0.738548418413411 NA NA prediction 0.410332791474715 Functional Gain - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73634321 chr7:73634320 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_32969 0 0 1 0 2 LAT2 chr7:73634338 5'GT 73634338 Upstream 19bp 30269 chr9 117037941 117037941 1 + G A COAD 117037942 + 117037922 117037962 41 TTCATGCCCTGCCACCCAGGGGGACAGGGGAGACCCAGGGC TTCATGCCCTGCCACCCAGAGGGACAGGGGAGACCCAGGGC < 41bp 0.515741817208415 0.720907842624495 NA NA prediction 0.41033205083216 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117037942 chr9:117037941 nonsynonymous SNV 0.873 4 20 hm7G_associated_SNPs_32970 0 0 1 0 1 COL27A1 chr9:117037941 3'AG 117037941 Downstream 1bp 30270 chr19 49691975 49691975 1 + G A SKCM 49691976 + 49691956 49691996 41 GCCTGGAGCCTGACGCTGAGGAGGCAGCACGGAGGAAAGAC GCCTGGAGCCTGACGCTGAAGAGGCAGCACGGAGGAAAGAC < 41bp 0.495318443364886 0.705165740564169 NA NA prediction 0.410331481128339 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49691976 chr19:49691975 synonymous SNV . 0 20 hm7G_associated_SNPs_32971 0 0 1 0 1 TRPM4 chr19:49692027 5'GT 49692027 Upstream 53bp 30271 chr14 92949145 92949145 1 + C T HNSC 92949146 + 92949126 92949166 41 TCATGGTCACCTTCATCACCGCCACGCTGTGGATCGCTGTG TCATGGTCACCTTCATCACTGCCACGCTGTGGATCGCTGTG < 41bp 0.509144401762739 0.714308115964324 NA NA prediction 0.410327428403169 Functional Gain - SLC24A4 ENSG00000140090 CDS Human protein_coding chr14:92949146 chr14:92949145 synonymous SNV . 0 20 hm7G_associated_SNPs_32974 0 0 0 0 1 SLC24A4 chr14:92949190 5'GT 92949190 Upstream 46bp 30272 chr9 4583161 4583161 1 + C T UCEC 4583162 + 4583142 4583182 41 TCACCCTGATCATTGCTGTCGACTGGCTCCTGTGAGTTGGA TCACCCTGATCATTGCTGTTGACTGGCTCCTGTGAGTTGGA < 41bp 0.493983992529453 0.705163588814465 NA NA prediction 0.41032717762893 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4583162 chr9:4583161 synonymous SNV . 0 20 hm7G_associated_SNPs_32976 0 0 0 0 1 SLC1A1 chr9:4583172 5'GT 4583172 Upstream 12bp 30273 chr11 44626652 44626652 1 + G A STAD 44626653 + 44626633 44626673 41 GGGGGCCTATGTCTTCATCGGCGTGGGGGCAGTCACTATGC GGGGGCCTATGTCTTCATCAGCGTGGGGGCAGTCACTATGC < 41bp 0.577631300683396 0.782793857245843 NA NA prediction 0.410325113124892 Functional Gain - CD82 ENSG00000085117 CDS Human protein_coding chr11:44626653 chr11:44626652 nonsynonymous SNV 0.964 1 20 hm7G_associated_SNPs_32977 0 0 1 0 2 CD82 chr11:44626608 3'AG 44626608 Downstream 45bp 30274 chr11 44626652 44626652 1 + G A STAD 44626653 + 44626633 44626673 41 GGGGGCCTATGTCTTCATCGGCGTGGGGGCAGTCACTATGC GGGGGCCTATGTCTTCATCAGCGTGGGGGCAGTCACTATGC < 41bp 0.577631300683396 0.782793857245843 NA NA prediction 0.410325113124892 Functional Gain - CD82 ENSG00000085117 CDS Human protein_coding chr11:44626653 chr11:44626652 nonsynonymous SNV 0.964 1 20 hm7G_associated_SNPs_32977 0 0 1 0 2 CD82 chr11:44626732 5'GT 44626732 Upstream 81bp 30275 chr5 167855090 167855090 1 + C T BLCA 167855091 + 167855071 167855111 41 TGGCCTGTGTCTCAGCCGCCGTATCGGACGAGTCAGTGGCT TGGCCTGTGTCTCAGCCGCTGTATCGGACGAGTCAGTGGCT < 41bp 0.533633315601329 0.738795314764655 NA NA prediction 0.410323998326652 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167855091 chr5:167855090 synonymous SNV . 0 20 hm7G_associated_SNPs_32978 0 0 0 0 2 WWC1 chr5:167855038 3'AG 167855038 Downstream 53bp 30276 chr5 167855090 167855090 1 + C T BLCA 167855091 + 167855071 167855111 41 TGGCCTGTGTCTCAGCCGCCGTATCGGACGAGTCAGTGGCT TGGCCTGTGTCTCAGCCGCTGTATCGGACGAGTCAGTGGCT < 41bp 0.533633315601329 0.738795314764655 NA NA prediction 0.410323998326652 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167855091 chr5:167855090 synonymous SNV . 0 20 hm7G_associated_SNPs_32978 0 0 0 0 2 WWC1 chr5:167855146 5'GT 167855146 Upstream 57bp 30277 chr4 8607738 8607738 1 + C T rs113873823 8607739 + 8607719 8607759 41 AGCCCGAGGTGAAGCTCATCGGCAACATTCATGGCAACGAG AGCCCGAGGTGAAGCTCATTGGCAACATTCATGGCAACGAG < 41bp 0.498771967971419 0.705156678328984 NA NA prediction 0.410313356657967 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8607739 chr4:8607738 synonymous SNV . 0 20 hm7G_associated_SNPs_32979 0 0 1 0 1 CPZ chr4:8607716 3'AG 8607716 Downstream 23bp 30278 chr20 61594660 61594660 1 + C T HNSC 61594661 + 61594641 61594681 41 GGGTGTCCTGGCCCAAAGCCGGCCGGTGTCCAGGCACAACA GGGTGTCCTGGCCCAAAGCTGGCCGGTGTCCAGGCACAACA < 41bp 0.489078837510471 0.705153835414266 NA NA prediction 0.410307670828532 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594661 chr20:61594660 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_32980 0 0 1 0 2 SLC17A9 chr20:61594625 3'AG 61594625 Downstream 36bp 30279 chr20 61594660 61594660 1 + C T HNSC 61594661 + 61594641 61594681 41 GGGTGTCCTGGCCCAAAGCCGGCCGGTGTCCAGGCACAACA GGGTGTCCTGGCCCAAAGCTGGCCGGTGTCCAGGCACAACA < 41bp 0.489078837510471 0.705153835414266 NA NA prediction 0.410307670828532 Functional Gain - SLC17A9 ENSG00000101194 CDS Human protein_coding chr20:61594661 chr20:61594660 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_32980 0 0 1 0 2 SLC17A9 chr20:61594721 5'GT 61594721 Upstream 62bp 30280 chr10 129868053 129868053 1 + C T UCEC 129868054 + 129868034 129868074 41 TGTGTTTGAATTTGTGTCTCGAATCCGTAATCAGCGCCCTC TGTGTTTGAATTTGTGTCTTGAATCCGTAATCAGCGCCCTC < 41bp 0.542792214770894 0.747944733139285 NA NA prediction 0.410305036736782 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129868054 chr10:129868053 stopgain 0.658 1 20 hm7G_associated_SNPs_32982 0 0 0 0 2 PTPRE chr10:129867956 3'AG 129867956 Downstream 98bp 30281 chr10 129868053 129868053 1 + C T UCEC 129868054 + 129868034 129868074 41 TGTGTTTGAATTTGTGTCTCGAATCCGTAATCAGCGCCCTC TGTGTTTGAATTTGTGTCTTGAATCCGTAATCAGCGCCCTC < 41bp 0.542792214770894 0.747944733139285 NA NA prediction 0.410305036736782 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129868054 chr10:129868053 stopgain 0.658 1 20 hm7G_associated_SNPs_32982 0 0 0 0 2 PTPRE chr10:129868091 5'GT 129868091 Upstream 39bp 30282 chr11 397614 397614 1 + G A rs146140233 397615 + 397595 397635 41 ACCTGCAGGTGCTGGGAGCGGCCTACATCCAGCACAAGTGC ACCTGCAGGTGCTGGGAGCAGCCTACATCCAGCACAAGTGC < 41bp 0.554833463793567 0.75998532907079 NA NA prediction 0.410303730554447 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:397615 chr11:397614 synonymous SNV . 0 20 hm7G_associated_SNPs_32984 0 0 1 0 2 PKP3 chr11:397539 3'AG 397539 Downstream 76bp 30283 chr11 397614 397614 1 + G A rs146140233 397615 + 397595 397635 41 ACCTGCAGGTGCTGGGAGCGGCCTACATCCAGCACAAGTGC ACCTGCAGGTGCTGGGAGCAGCCTACATCCAGCACAAGTGC < 41bp 0.554833463793567 0.75998532907079 NA NA prediction 0.410303730554447 Functional Gain - PKP3 ENSG00000184363 CDS Human protein_coding chr11:397615 chr11:397614 synonymous SNV . 0 20 hm7G_associated_SNPs_32984 0 0 1 0 2 PKP3 chr11:397662 5'GT 397662 Upstream 49bp 30284 chr1 213415970 213415970 1 + C T LUSC 213415971 + 213415951 213415991 41 TTGAAGATTCCTGTGACAGCGATGCCATAGAGAGAATGTAC TTGAAGATTCCTGTGACAGTGATGCCATAGAGAGAATGTAC < 41bp 0.515344563496194 0.720493210513359 NA NA prediction 0.41029729403433 Functional Gain - RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213415971 chr1:213415970 synonymous SNV . 0 20 hm7G_associated_SNPs_32988 0 0 1 0 2 RPS6KC1 chr1:213415912 3'AG 213415912 Downstream 59bp 30285 chr1 213415970 213415970 1 + C T LUSC 213415971 + 213415951 213415991 41 TTGAAGATTCCTGTGACAGCGATGCCATAGAGAGAATGTAC TTGAAGATTCCTGTGACAGTGATGCCATAGAGAGAATGTAC < 41bp 0.515344563496194 0.720493210513359 NA NA prediction 0.41029729403433 Functional Gain - RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213415971 chr1:213415970 synonymous SNV . 0 20 hm7G_associated_SNPs_32988 0 0 1 0 2 RPS6KC1 chr1:213416001 5'GT 213416001 Upstream 32bp 30286 chr19 1918190 1918190 1 + G A rs201850584 1918191 + 1918171 1918211 41 GGTGGATCGGCGGAGGCTCGGGGACCAACTTCGGCCTGGCC GGTGGATCGGCGGAGGCTCAGGGACCAACTTCGGCCTGGCC < 41bp 0.572337472714048 0.777484657528571 NA NA prediction 0.410294369629045 Functional Gain - SCAMP4 ENSG00000227500 CDS Human protein_coding chr19:1918191 chr19:1918190 synonymous SNV . 0 20 hm7G_associated_SNPs_32989 0 0 1 0 2 SCAMP4 chr19:1918126 3'AG 1918126 Downstream 65bp 30287 chr19 1918190 1918190 1 + G A rs201850584 1918191 + 1918171 1918211 41 GGTGGATCGGCGGAGGCTCGGGGACCAACTTCGGCCTGGCC GGTGGATCGGCGGAGGCTCAGGGACCAACTTCGGCCTGGCC < 41bp 0.572337472714048 0.777484657528571 NA NA prediction 0.410294369629045 Functional Gain - SCAMP4 ENSG00000227500 CDS Human protein_coding chr19:1918191 chr19:1918190 synonymous SNV . 0 20 hm7G_associated_SNPs_32989 0 0 1 0 2 SCAMP4 chr19:1918282 5'GT 1918282 Upstream 93bp 30288 chr12 49937233 49937233 1 + G A SKCM 49937234 + 49937214 49937254 41 GTGTGTGTGAGCACAGCACGGGAGCCCAGTGCCGCCCGCGG GTGTGTGTGAGCACAGCACAGGAGCCCAGTGCCGCCCGCGG < 41bp 0.600025329241865 0.805171648138917 NA NA prediction 0.410292637794104 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49937234 chr12:49937233 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_32991 0 0 0 0 1 KCNH3 chr12:49937301 5'GT 49937301 Upstream 69bp 30289 chr19 40710446 40710446 1 + C T LUAD 40710447 + 40710427 40710467 41 AGGTCCCCTACCGTGAGATCGACGCCTTGGCCGTGGCGTAT AGGTCCCCTACCGTGAGATTGACGCCTTGGCCGTGGCGTAT < 41bp 0.50800035074283 0.713144665304123 NA NA prediction 0.410288629122586 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40710447 chr19:40710446 synonymous SNV . 0 20 hm7G_associated_SNPs_32992 0 0 1 0 1 MAP3K10 chr19:40710392 3'AG 40710392 Downstream 55bp 30290 chr1 23236980 23236980 1 + C T ESCA 23236981 + 23236961 23237001 41 GCAGAAGGACCGCAACCACCGGCCCAAGTTCGGCCAAATTG GCAGAAGGACCGCAACCACTGGCCCAAGTTCGGCCAAATTG < 41bp 0.535333173737849 0.740475368355427 NA NA prediction 0.410284389235155 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23236981 chr1:23236980 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_32993 0 0 0 0 1 EPHB2 chr1:23237068 5'GT 23237068 Upstream 89bp 30291 chr11 73104900 73104900 1 + G A ESCA 73104901 + 73104881 73104921 41 GGAATCAACCCTGCCTACCGGACTGAGGATGCCAATGAGGA GGAATCAACCCTGCCTACCAGACTGAGGATGCCAATGAGGA < 41bp 0.536868742146054 0.742007814066624 NA NA prediction 0.41027814384114 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73104901 chr11:73104900 nonsynonymous SNV 0.970 0 20 hm7G_associated_SNPs_32994 0 0 1 0 2 RELT chr11:73104882 3'AG 73104882 Downstream 19bp 30292 chr11 73104900 73104900 1 + G A ESCA 73104901 + 73104881 73104921 41 GGAATCAACCCTGCCTACCGGACTGAGGATGCCAATGAGGA GGAATCAACCCTGCCTACCAGACTGAGGATGCCAATGAGGA < 41bp 0.536868742146054 0.742007814066624 NA NA prediction 0.41027814384114 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73104901 chr11:73104900 nonsynonymous SNV 0.970 0 20 hm7G_associated_SNPs_32994 0 0 1 0 2 RELT chr11:73104962 5'GT 73104962 Upstream 63bp 30293 chr17 9613338 9613338 1 + C T COAD 9613339 + 9613319 9613359 41 CAGCACGGTGGAACCGCTTCGAGAAGATGAGGTCAACACCA CAGCACGGTGGAACCGCTTTGAGAAGATGAGGTCAACACCA < 41bp 0.519028982999978 0.72416781785428 NA NA prediction 0.410277669708604 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9613339 chr17:9613338 stopgain 0.033 0 20 hm7G_associated_SNPs_32995 0 0 0 0 2 USP43 chr17:9613273 3'AG 9613273 Downstream 66bp 30294 chr17 9613338 9613338 1 + C T COAD 9613339 + 9613319 9613359 41 CAGCACGGTGGAACCGCTTCGAGAAGATGAGGTCAACACCA CAGCACGGTGGAACCGCTTTGAGAAGATGAGGTCAACACCA < 41bp 0.519028982999978 0.72416781785428 NA NA prediction 0.410277669708604 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9613339 chr17:9613338 stopgain 0.033 0 20 hm7G_associated_SNPs_32995 0 0 0 0 2 USP43 chr17:9613431 5'GT 9613431 Upstream 94bp 30295 chr11 73957089 73957089 1 + C T UCEC 73957090 + 73957070 73957110 41 TTCCTCCAGGGGTTGCCCTCGGAGACTCAGAACTTGCTCTT TTCCTCCAGGGGTTGCCCTTGGAGACTCAGAACTTGCTCTT < 41bp 0.527899432952258 0.733038105813681 NA NA prediction 0.410277345722846 Functional Gain - PPME1 ENSG00000214517 CDS Human protein_coding chr11:73957090 chr11:73957089 nonsynonymous SNV 0.417 0 20 hm7G_associated_SNPs_32996 0 0 1 0 1 PPME1 chr11:73957079 3'AG 73957079 Downstream 11bp 30296 chr14 103806116 103806116 1 + G T UCEC 103806117 + 103806097 103806137 41 CAGACCTTTTAGAAGAAGAGGTCATCATCAGCTGGTCGGAA CAGACCTTTTAGAAGAAGATGTCATCATCAGCTGGTCGGAA < 41bp 0.378933900538025 0.705138092196956 NA NA prediction 0.410276184393911 Functional Gain - EIF5 ENSG00000100664 CDS Human protein_coding chr14:103806117 chr14:103806116 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_32997 0 0 1 0 1 EIF5 chr14:103806140 5'GT 103806140 Upstream 25bp 30297 chr14 71571967 71571967 1 + C T UCEC 71571968 + 71571948 71571988 41 CTAGGCTTAGGAAAGGTTGCGGAGCTGGATGTAACAGTGGT CTAGGCTTAGGAAAGGTTGTGGAGCTGGATGTAACAGTGGT < 41bp 0.51524744304729 0.720381893836997 NA NA prediction 0.410268901579413 Functional Gain - PCNX1 ENSG00000100731 CDS Human protein_coding chr14:71571968 chr14:71571967 synonymous SNV . 0 20 hm7G_associated_SNPs_32999 0 0 1 0 1 PCNX1 chr14:71571952 3'AG 71571952 Downstream 16bp 30298 chr22 29439407 29439407 1 + C T CESC 29439408 + 29439388 29439428 41 TCGAGCAAGGATCCAGCACCGCCCTCCTCGAGTGAGCCTCC TCGAGCAAGGATCCAGCACTGCCCTCCTCGAGTGAGCCTCC < 41bp 0.530133423374177 0.735267428426066 NA NA prediction 0.410268010103777 Functional Gain - ZNRF3 ENSG00000183579 CDS Human protein_coding chr22:29439408 chr22:29439407 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33000 0 0 1 0 1 ZNRF3 chr22:29439418 5'GT 29439418 Upstream 12bp 30299 chr3 154855962 154855962 1 + C T HNSC 154855963 + 154855943 154855983 41 AGGAAGAAAGATTGCCCATCGATGAAAACCAGCTTGCTTTG AGGAAGAAAGATTGCCCATTGATGAAAACCAGCTTGCTTTG < 41bp 0.497240775372041 0.70513376856897 NA NA prediction 0.410267537137941 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154855963 chr3:154855962 synonymous SNV . 0 20 hm7G_associated_SNPs_33001 0 0 0 0 2 MME chr3:154855891 3'AG 154855891 Downstream 72bp 30300 chr3 154855962 154855962 1 + C T HNSC 154855963 + 154855943 154855983 41 AGGAAGAAAGATTGCCCATCGATGAAAACCAGCTTGCTTTG AGGAAGAAAGATTGCCCATTGATGAAAACCAGCTTGCTTTG < 41bp 0.497240775372041 0.70513376856897 NA NA prediction 0.410267537137941 Functional Gain - MME ENSG00000196549 CDS Human protein_coding chr3:154855963 chr3:154855962 synonymous SNV . 0 20 hm7G_associated_SNPs_33001 0 0 0 0 2 MME chr3:154856025 5'GT 154856025 Upstream 64bp 30301 chr1 9661216 9661216 1 + C T STAD 9661217 + 9661197 9661237 41 TCATCCTGCTCCGTGCCCTCGCCTTCCTGGCCTGCGCCTTC TCATCCTGCTCCGTGCCCTTGCCTTCCTGGCCTGCGCCTTC < 41bp 0.517481190915811 0.722614754749862 NA NA prediction 0.410267127668102 Functional Gain - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9661217 chr1:9661216 synonymous SNV . 0 20 hm7G_associated_SNPs_33002 0 0 1 0 1 TMEM201 chr1:9661163 3'AG 9661163 Downstream 54bp 30302 chr9 125140782 125140782 1 + C T COAD 125140783 + 125140763 125140803 41 CCCACTTCCTGCTCACTCACGGGCGCTGGTTCTGGGAGTTT CCCACTTCCTGCTCACTCATGGGCGCTGGTTCTGGGAGTTT < 41bp 0.528587179083046 0.733720074112475 NA NA prediction 0.410265790058857 Functional Gain - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125140783 chr9:125140782 synonymous SNV . 0 20 hm7G_associated_SNPs_33004 0 0 0 0 2 PTGS1 chr9:125140712 3'AG 125140712 Downstream 71bp 30303 chr9 125140782 125140782 1 + C T COAD 125140783 + 125140763 125140803 41 CCCACTTCCTGCTCACTCACGGGCGCTGGTTCTGGGAGTTT CCCACTTCCTGCTCACTCATGGGCGCTGGTTCTGGGAGTTT < 41bp 0.528587179083046 0.733720074112475 NA NA prediction 0.410265790058857 Functional Gain - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125140783 chr9:125140782 synonymous SNV . 0 20 hm7G_associated_SNPs_33004 0 0 0 0 2 PTGS1 chr9:125140852 5'GT 125140852 Upstream 71bp 30304 chr13 48955550 48955550 1 + C T COAD 48955551 + 48955531 48955571 41 TTTAGAACGATGTGAACATCGAATCATGGAATCCCTTGCAT TTTAGAACGATGTGAACATTGAATCATGGAATCCCTTGCAT < 41bp 0.502095810268948 0.707227537435662 NA NA prediction 0.410263454333428 Functional Gain - RB1 ENSG00000139687 CDS Human protein_coding chr13:48955551 chr13:48955550 stopgain 1.000 1 20 hm7G_associated_SNPs_33005 4 0 1 0 1 RB1 chr13:48955579 5'GT 48955579 Upstream 30bp 30305 chr17 55068495 55068495 1 + G A UCEC 55068496 + 55068476 55068516 41 CCATCAAGTGCAACTTTGCGGGGGTTGCCTTGGGTGATTCC CCATCAAGTGCAACTTTGCAGGGGTTGCCTTGGGTGATTCC < 41bp 0.500499620686904 0.705628428641295 NA NA prediction 0.410257615908782 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55068496 chr17:55068495 nonsynonymous SNV 0.456 0 20 hm7G_associated_SNPs_33007 0 0 1 0 2 SCPEP1 chr17:55068460 3'AG 55068460 Downstream 36bp 30306 chr17 55068495 55068495 1 + G A UCEC 55068496 + 55068476 55068516 41 CCATCAAGTGCAACTTTGCGGGGGTTGCCTTGGGTGATTCC CCATCAAGTGCAACTTTGCAGGGGTTGCCTTGGGTGATTCC < 41bp 0.500499620686904 0.705628428641295 NA NA prediction 0.410257615908782 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55068496 chr17:55068495 nonsynonymous SNV 0.456 0 20 hm7G_associated_SNPs_33007 0 0 1 0 2 SCPEP1 chr17:55068532 5'GT 55068532 Upstream 38bp 30307 chr11 66241285 66241285 1 + G A LGG 66241286 + 66241266 66241306 41 GAGTCCTGGTGATGCACCCGGCAGGCGGCTTCTCCGAGGAC GAGTCCTGGTGATGCACCCAGCAGGCGGCTTCTCCGAGGAC < 41bp 0.475595100955226 0.705126917188725 NA NA prediction 0.41025383437745 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66241286 chr11:66241285 synonymous SNV . 0 20 hm7G_associated_SNPs_33008 0 0 1 0 1 PELI3 chr11:66241208 3'AG 66241208 Downstream 78bp 30308 chrX 152994812 152994812 1 + G A COAD 152994813 + 152994793 152994833 41 AGTATGTGTGGAGCGCCTCGGGCCTGCTCATGGTGGCTGTC AGTATGTGTGGAGCGCCTCAGGCCTGCTCATGGTGGCTGTC < 41bp 0.553814616786613 0.758939960115667 NA NA prediction 0.410250686658108 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:152994813 chrX:152994812 synonymous SNV . 0 20 hm7G_associated_SNPs_33011 0 0 0 0 1 ABCD1 chrX:152994867 5'GT 152994867 Upstream 56bp 30309 chr9 96002042 96002042 1 + C T UCEC 96002043 + 96002023 96002063 41 GCTGCTCTCCCTCCAGGTACGAGATCAAAGACCTGCTGAGC GCTGCTCTCCCTCCAGGTATGAGATCAAAGACCTGCTGAGC < 41bp 0.501831680333998 0.706956281219791 NA NA prediction 0.410249201771585 Functional Gain - WNK2 ENSG00000165238 CDS Human protein_coding chr9:96002043 chr9:96002042 synonymous SNV . 0 20 hm7G_associated_SNPs_33012 0 0 1 0 1 WNK2 chr9:96002039 3'AG 96002039 Downstream 4bp 30310 chr19 15132474 15132474 1 + G A LUAD 15132475 + 15132455 15132495 41 ATGAGGGGAACTATCCTCCGGTGTACGAAATATAACCAAGA ATGAGGGGAACTATCCTCCAGTGTACGAAATATAACCAAGA < 41bp 0.500414654728354 0.705537510553222 NA NA prediction 0.410245711649736 Functional Gain - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15132475 chr19:15132474 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_33013 0 0 0 0 2 CCDC105 chr19:15132428 3'AG 15132428 Downstream 47bp 30311 chr19 15132474 15132474 1 + G A LUAD 15132475 + 15132455 15132495 41 ATGAGGGGAACTATCCTCCGGTGTACGAAATATAACCAAGA ATGAGGGGAACTATCCTCCAGTGTACGAAATATAACCAAGA < 41bp 0.500414654728354 0.705537510553222 NA NA prediction 0.410245711649736 Functional Gain - CCDC105 ENSG00000160994 CDS Human protein_coding chr19:15132475 chr19:15132474 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_33013 0 0 0 0 2 CCDC105 chr19:15132523 5'GT 15132523 Upstream 50bp 30312 chr10 119015020 119015020 1 + G T LUSC 119015021 + 119015001 119015041 41 TTTGTGCTCCAGCCGTCCCGGGTGCAGCCAGAGGTAAGCGG TTTGTGCTCCAGCCGTCCCTGGTGCAGCCAGAGGTAAGCGG < 41bp 0.704889644345889 0.910012462900705 NA NA prediction 0.410245637109631 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119015021 chr10:119015020 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_33015 0 0 0 0 3 SLC18A2 chr10:119014990 3'AG 119014990 Downstream 31bp 30313 chr10 119015020 119015020 1 + G T LUSC 119015021 + 119015001 119015041 41 TTTGTGCTCCAGCCGTCCCGGGTGCAGCCAGAGGTAAGCGG TTTGTGCTCCAGCCGTCCCTGGTGCAGCCAGAGGTAAGCGG < 41bp 0.704889644345889 0.910012462900705 NA NA prediction 0.410245637109631 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119015021 chr10:119015020 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_33015 0 0 0 0 3 SLC18A2 chr10:119015033 5'GT 119015033 Upstream 14bp 30314 chr10 119015020 119015020 1 + G T LUSC 119015021 + 119015001 119015041 41 TTTGTGCTCCAGCCGTCCCGGGTGCAGCCAGAGGTAAGCGG TTTGTGCTCCAGCCGTCCCTGGTGCAGCCAGAGGTAAGCGG < 41bp 0.704889644345889 0.910012462900705 NA NA prediction 0.410245637109631 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119015021 chr10:119015020 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_33015 0 0 0 0 3 SLC18A2 chr10:119015108 5'GT 119015108 Upstream 89bp 30315 chr2 179318260 179318260 1 + C T UCEC 179318261 + 179318241 179318281 41 TCTGGTGGTAAAAAAGAAGCGATGCTTTCTGTTTCCTAGAT TCTGGTGGTAAAAAAGAAGTGATGCTTTCTGTTTCCTAGAT < 41bp 0.507154111169323 0.712275258201939 NA NA prediction 0.410242294065232 Functional Gain - DFNB59 ENSG00000204311 CDS Human protein_coding chr2:179318261 chr2:179318260 stopgain 1.000 1 20 hm7G_associated_SNPs_33017 0 0 0 0 1 DFNB59 chr2:179318347 5'GT 179318347 Upstream 88bp 30316 chr4 74308080 74308080 1 + C T SKCM 74308081 + 74308061 74308101 41 AATTCTTCTTTGGGCTGCTCGCTATGACAAAATAATTCCAT AATTCTTCTTTGGGCTGCTTGCTATGACAAAATAATTCCAT < 41bp 0.508520085353393 0.71364105387042 NA NA prediction 0.410241937034055 Functional Gain - AFP ENSG00000081051 CDS Human protein_coding chr4:74308081 chr4:74308080 nonsynonymous SNV 0.273 2 20 hm7G_associated_SNPs_33018 0 0 1 0 2 AFP chr4:74308013 3'AG 74308013 Downstream 68bp 30317 chr4 74308080 74308080 1 + C T SKCM 74308081 + 74308061 74308101 41 AATTCTTCTTTGGGCTGCTCGCTATGACAAAATAATTCCAT AATTCTTCTTTGGGCTGCTTGCTATGACAAAATAATTCCAT < 41bp 0.508520085353393 0.71364105387042 NA NA prediction 0.410241937034055 Functional Gain - AFP ENSG00000081051 CDS Human protein_coding chr4:74308081 chr4:74308080 nonsynonymous SNV 0.273 2 20 hm7G_associated_SNPs_33018 0 0 1 0 2 AFP chr4:74308145 5'GT 74308145 Upstream 66bp 30318 chr16 28913258 28913258 1 + C T UCEC 28913259 + 28913239 28913279 41 CCATGGGATCTGGCACTGCCGTGGCCAAGACTGCCTCTGAG CCATGGGATCTGGCACTGCTGTGGCCAAGACTGCCTCTGAG < 41bp 0.511697885163083 0.716815027217504 NA NA prediction 0.410234284108841 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28913259 chr16:28913258 synonymous SNV . 0 20 hm7G_associated_SNPs_33021 0 0 1 0 1 ATP2A1 chr16:28913184 3'AG 28913184 Downstream 75bp 30319 chr17 79673941 79673941 1 + G A rs150159632 79673942 + 79673922 79673962 41 TCCTGCTCCCTAAGGCGGTGGAAGAAGATATCCCCATAGCG TCCTGCTCCCTAAGGCGGTAGAAGAAGATATCCCCATAGCG < 41bp 0.52140764722066 0.726520231674936 NA NA prediction 0.410225168908551 Functional Gain - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79673942 chr17:79673941 synonymous SNV . 0 20 hm7G_associated_SNPs_33022 0 0 1 0 1 MRPL12 chr17:79673936 3'AG 79673936 Downstream 6bp 30320 chr11 558017 558017 1 - C T LUAD 558016 - 557996 558036 41 AAGGAGCACCTGGAGGAGCGGCTGCTGCAGACCACCCGCAC AAGGAGCACCTGGAGGAGCAGCTGCTGCAGACCACCCGCAC < 41bp 0.578192574342223 0.783304600161483 NA NA prediction 0.410224051638519 Functional Gain - LMNTD2 ENSG00000185522 CDS Human protein_coding chr11:558016 chr11:558017 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_33025 0 0 0 0 1 LMNTD2 chr11:558039 3'AG 558039 Downstream 23bp 30321 chr3 53223136 53223136 1 + C T UCEC 53223137 + 53223117 53223157 41 CTTTCGGGGTCCTTCTGTACGAGATGCTCATTGGCCAGTCC CTTTCGGGGTCCTTCTGTATGAGATGCTCATTGGCCAGTCC < 41bp 0.53905753373592 0.74416878319736 NA NA prediction 0.410222498922881 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53223137 chr3:53223136 synonymous SNV . 0 20 hm7G_associated_SNPs_33026 0 0 0 0 1 PRKCD chr3:53223074 3'AG 53223074 Downstream 63bp 30322 chr11 117209321 117209321 1 + C T STAD 117209322 + 117209302 117209342 41 CATGGCTGGACGACCCCTCCGCATAGGAGATCAGCTGGTTC CATGGCTGGACGACCCCTCTGCATAGGAGATCAGCTGGTTC < 41bp 0.506802983068679 0.711908734161493 NA NA prediction 0.410211502185628 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117209322 chr11:117209321 nonsynonymous SNV 0.028 0 20 hm7G_associated_SNPs_33028 0 0 1 0 2 CEP164 chr11:117209282 3'AG 117209282 Downstream 40bp 30323 chr11 117209321 117209321 1 + C T STAD 117209322 + 117209302 117209342 41 CATGGCTGGACGACCCCTCCGCATAGGAGATCAGCTGGTTC CATGGCTGGACGACCCCTCTGCATAGGAGATCAGCTGGTTC < 41bp 0.506802983068679 0.711908734161493 NA NA prediction 0.410211502185628 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117209322 chr11:117209321 nonsynonymous SNV 0.028 0 20 hm7G_associated_SNPs_33028 0 0 1 0 2 CEP164 chr11:117209384 5'GT 117209384 Upstream 64bp 30324 chrX 10093120 10093120 1 + C T UCEC 10093121 + 10093101 10093141 41 CTGCAGCTGAAGAACCCGGCGGGGCTGGCGGTGAAGGAAGA CTGCAGCTGAAGAACCCGGTGGGGCTGGCGGTGAAGGAAGA < 41bp 0.562994962952347 0.768100443254552 NA NA prediction 0.410210960604411 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10093121 chrX:10093120 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_33029 0 0 0 0 1 WWC3 chrX:10093064 3'AG 10093064 Downstream 57bp 30325 chr10 70520794 70520794 1 + C T UCEC 70520795 + 70520775 70520815 41 CCGAAAAGAATTAGAAAGTCGAGCTCTTAGTTCCAAAGGAT CCGAAAAGAATTAGAAAGTTGAGCTCTTAGTTCCAAAGGAT < 41bp 0.519441063150317 0.724540724587554 NA NA prediction 0.410199322874475 Functional Gain - CCAR1 ENSG00000060339 CDS Human protein_coding chr10:70520795 chr10:70520794 stopgain 0.999 1 20 hm7G_associated_SNPs_33031 0 0 1 0 1 CCAR1 chr10:70520764 3'AG 70520764 Downstream 31bp 30326 chr16 57265193 57265193 1 + C T COAD 57265194 + 57265174 57265214 41 TTAGCACTTTTAATGACTACGCCTTCCTAACAGCTGAAGAA TTAGCACTTTTAATGACTATGCCTTCCTAACAGCTGAAGAA < 41bp 0.49287280778744 0.705098207746146 NA NA prediction 0.410196415492293 Functional Gain - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57265194 chr16:57265193 synonymous SNV . 0 20 hm7G_associated_SNPs_33032 0 0 0 0 1 RSPRY1 chr16:57265231 5'GT 57265231 Upstream 39bp 30327 chr12 7021952 7021952 1 + C T UCEC 7021953 + 7021933 7021973 41 TCGAGACCTGCCCAAGCTGCGAGCGTTGGTGCTGCTTGATA TCGAGACCTGCCCAAGCTGTGAGCGTTGGTGCTGCTTGATA < 41bp 0.496615042410809 0.705094319571647 NA NA prediction 0.410188639143294 Functional Gain - LRRC23 ENSG00000010626 CDS Human protein_coding chr12:7021953 chr12:7021952 stopgain 0.993 0 20 hm7G_associated_SNPs_33033 0 0 0 0 1 LRRC23 chr12:7021894 3'AG 7021894 Downstream 59bp 30328 chr19 55820015 55820015 1 + C T BRCA 55820016 + 55819996 55820036 41 TGTGCCTCTAGGTCCCAGCCGTCGGTTCAAGCGAGTGGTGG TGTGCCTCTAGGTCCCAGCTGTCGGTTCAAGCGAGTGGTGG < 41bp 0.505404564683316 0.710496792024138 NA NA prediction 0.410184454681642 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55820016 chr19:55820015 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33034 0 0 0 0 2 BRSK1 chr19:55820007 3'AG 55820007 Downstream 9bp 30329 chr19 55820015 55820015 1 + C T BRCA 55820016 + 55819996 55820036 41 TGTGCCTCTAGGTCCCAGCCGTCGGTTCAAGCGAGTGGTGG TGTGCCTCTAGGTCCCAGCTGTCGGTTCAAGCGAGTGGTGG < 41bp 0.505404564683316 0.710496792024138 NA NA prediction 0.410184454681642 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55820016 chr19:55820015 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33034 0 0 0 0 2 BRSK1 chr19:55820096 5'GT 55820096 Upstream 82bp 30330 chr10 26825090 26825090 1 + C T COAD 26825091 + 26825071 26825111 41 AAAGAAATCCTGGAAAAGGCGCTATTTTCTTTTACGGGCTT AAAGAAATCCTGGAAAAGGTGCTATTTTCTTTTACGGGCTT < 41bp 0.493884706382349 0.705090728410946 NA NA prediction 0.410181456821891 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26825091 chr10:26825090 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33036 0 0 0 0 2 APBB1IP chr10:26825003 3'AG 26825003 Downstream 88bp 30331 chr10 26825090 26825090 1 + C T COAD 26825091 + 26825071 26825111 41 AAAGAAATCCTGGAAAAGGCGCTATTTTCTTTTACGGGCTT AAAGAAATCCTGGAAAAGGTGCTATTTTCTTTTACGGGCTT < 41bp 0.493884706382349 0.705090728410946 NA NA prediction 0.410181456821891 Functional Gain - APBB1IP ENSG00000077420 CDS Human protein_coding chr10:26825091 chr10:26825090 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33036 0 0 0 0 2 APBB1IP chr10:26825146 5'GT 26825146 Upstream 57bp 30332 chr5 133887867 133887867 1 + C T rs148698918 133887868 + 133887848 133887888 41 AAGGTGTGCAGGTGCCTGCCGGGGCAGAGGCCATCCCAGAG AAGGTGTGCAGGTGCCTGCTGGGGCAGAGGCCATCCCAGAG < 41bp 0.53882600767748 0.74391630560818 NA NA prediction 0.410180595861401 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133887868 chr5:133887867 synonymous SNV . 0 20 hm7G_associated_SNPs_33038 0 0 1 0 1 JADE2 chr5:133887899 5'GT 133887899 Upstream 33bp 30333 chr3 12856867 12856867 1 + G A SKCM 12856868 + 12856848 12856888 41 GCAAACACAGCCCCCGAAGGGATGGCTGGAGGCCATGGAGG GCAAACACAGCCCCCGAAGAGATGGCTGGAGGCCATGGAGG < 41bp 0.556572204249418 0.761662155843844 NA NA prediction 0.410179903188854 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12856868 chr3:12856867 nonsynonymous SNV 0.099 4 20 hm7G_associated_SNPs_33039 0 0 0 0 1 CAND2 chr3:12856932 5'GT 12856932 Upstream 66bp 30334 chr19 3525878 3525878 1 + C T PRAD 3525879 + 3525859 3525899 41 CCTTCAGGTCACAGAGATGCGGCGGACCCTGACGCCTGCCA CCTTCAGGTCACAGAGATGTGGCGGACCCTGACGCCTGCCA < 41bp 0.525812257577127 0.730900901603935 NA NA prediction 0.410177288053615 Functional Gain - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3525879 chr19:3525878 nonsynonymous SNV 0.882 2 20 hm7G_associated_SNPs_33040 0 0 1 0 1 FZR1 chr19:3525866 3'AG 3525866 Downstream 13bp 30335 chr14 24530768 24530768 1 + C T COAD 24530769 + 24530749 24530789 41 CTGTGGCCATGCGGGTGGCCGAGGGACACAACAAGATGCTG CTGTGGCCATGCGGGTGGCTGAGGGACACAACAAGATGCTG < 41bp 0.528521367960656 0.733608974874632 NA NA prediction 0.410175213827954 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24530769 chr14:24530768 synonymous SNV . 0 20 hm7G_associated_SNPs_33041 0 0 0 0 1 CARMIL3 chr14:24530706 3'AG 24530706 Downstream 63bp 30336 chr21 43838643 43838643 1 + G A rs13048049 43838644 + 43838624 43838664 41 GTGATTGGGATCTCACAGCGGACGGGCTGCCGGGGCTTCCT GTGATTGGGATCTCACAGCAGACGGGCTGCCGGGGCTTCCT < 41bp 0.530770678691713 0.735857850383759 NA NA prediction 0.410174343384092 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43838644 chr21:43838643 nonsynonymous SNV 0.895 0 20 hm7G_associated_SNPs_33042 0 0 0 0 1 UBASH3A chr21:43838718 5'GT 43838718 Upstream 76bp 30337 chrX 128710497 128710497 1 + C T HNSC 128710498 + 128710478 128710518 41 CCGTATGAAAAGACCAATCCGAGAAGTTCCTGTTACCAAAC CCGTATGAAAAGACCAATCTGAGAAGTTCCTGTTACCAAAC < 41bp 0.52952077833212 0.734607654052415 NA NA prediction 0.410173751440589 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128710498 chrX:128710497 stopgain 0.993 1 20 hm7G_associated_SNPs_33043 0 0 1 0 1 OCRL chrX:128710529 5'GT 128710529 Upstream 33bp 30338 chr17 61770916 61770916 1 + G A READ 61770917 + 61770897 61770937 41 CTCTCTTTCCAGGAGCCTGGGCTGCACTGTGGTGGAGATGC CTCTCTTTCCAGGAGCCTGAGCTGCACTGTGGTGGAGATGC < 41bp 0.514324631519744 0.719411368585713 NA NA prediction 0.410173474131939 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61770917 chr17:61770916 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_33044 0 0 1 0 1 MAP3K3 chr17:61770909 3'AG 61770909 Downstream 8bp 30339 chr20 56140439 56140439 1 + G A rs41302559 56140440 + 56140420 56140460 41 CATGACCCCTTTGCCATGCGGCCCTTCTTTGGCTACAACTT CATGACCCCTTTGCCATGCAGCCCTTCTTTGGCTACAACTT < 41bp 0.514506624597758 0.719593015480527 NA NA prediction 0.410172781765538 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56140440 chr20:56140439 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_33045 0 1 1 0 1 PCK1 chr20:56140406 3'AG 56140406 Downstream 34bp 30340 chr2 3425731 3425731 1 + G A rs35775829 3425732 + 3425712 3425752 41 CAGGGCTACGGCAAGAGCGGGCTGCTCACCAGCCACACGAC CAGGGCTACGGCAAGAGCGAGCTGCTCACCAGCCACACGAC < 41bp 0.557848419951319 0.762933240119102 NA NA prediction 0.410169640335566 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3425732 chr2:3425731 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_33047 0 0 1 0 2 TRAPPC12 chr2:3425652 3'AG 3425652 Downstream 80bp 30341 chr2 3425731 3425731 1 + G A rs35775829 3425732 + 3425712 3425752 41 CAGGGCTACGGCAAGAGCGGGCTGCTCACCAGCCACACGAC CAGGGCTACGGCAAGAGCGAGCTGCTCACCAGCCACACGAC < 41bp 0.557848419951319 0.762933240119102 NA NA prediction 0.410169640335566 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3425732 chr2:3425731 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_33047 0 0 1 0 2 TRAPPC12 chr2:3425765 5'GT 3425765 Upstream 35bp 30342 chr2 220506380 220506380 1 + C T UCEC 220506381 + 220506361 220506401 41 TTCCCTCTGCAGCTGGACTCGGAAGATGCTGAACCAAACTT TTCCCTCTGCAGCTGGACTTGGAAGATGCTGAACCAAACTT < 41bp 0.506501390668483 0.711585847312943 NA NA prediction 0.410168913288919 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220506381 chr2:220506380 nonsynonymous SNV 0.784 2 20 hm7G_associated_SNPs_33048 0 0 0 0 1 SLC4A3 chr2:220506373 3'AG 220506373 Downstream 8bp 30343 chr20 18513372 18513372 1 + C T rs17807673 18513373 + 18513353 18513393 41 TCTCTGAATGTGAAAGGACCGTGTGTGTCAGAAAATGTAAG TCTCTGAATGTGAAAGGACTGTGTGTGTCAGAAAATGTAAG < 41bp 0.514316577493142 0.719399339319382 NA NA prediction 0.410165523652479 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18513373 chr20:18513372 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_33050 2 0 1 0 2 SEC23B chr20:18513308 3'AG 18513308 Downstream 65bp 30344 chr20 18513372 18513372 1 + C T rs17807673 18513373 + 18513353 18513393 41 TCTCTGAATGTGAAAGGACCGTGTGTGTCAGAAAATGTAAG TCTCTGAATGTGAAAGGACTGTGTGTGTCAGAAAATGTAAG < 41bp 0.514316577493142 0.719399339319382 NA NA prediction 0.410165523652479 Functional Gain - SEC23B ENSG00000101310 CDS Human protein_coding chr20:18513373 chr20:18513372 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_33050 2 0 1 0 2 SEC23B chr20:18513388 5'GT 18513388 Upstream 17bp 30345 chrX 13607687 13607687 1 + C T BLCA 13607688 + 13607668 13607708 41 TCTGCAGTGCAAGGCATCACGGGTTGTTAGCATCGGCACGT TCTGCAGTGCAAGGCATCATGGGTTGTTAGCATCGGCACGT < 41bp 0.524582742031744 0.729658706616699 NA NA prediction 0.41015192916991 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607688 chrX:13607687 synonymous SNV . 0 20 hm7G_associated_SNPs_33052 0 0 0 0 2 EGFL6 chrX:13607675 3'AG 13607675 Downstream 13bp 30346 chrX 13607687 13607687 1 + C T BLCA 13607688 + 13607668 13607708 41 TCTGCAGTGCAAGGCATCACGGGTTGTTAGCATCGGCACGT TCTGCAGTGCAAGGCATCATGGGTTGTTAGCATCGGCACGT < 41bp 0.524582742031744 0.729658706616699 NA NA prediction 0.41015192916991 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607688 chrX:13607687 synonymous SNV . 0 20 hm7G_associated_SNPs_33052 0 0 0 0 2 EGFL6 chrX:13607681 3'AG 13607681 Downstream 7bp 30347 chr22 24580230 24580230 1 + C T UCEC 24580231 + 24580211 24580251 41 CATGTCAAGTCGCTGCCCACGCAGACCATCACCATCGAACT CATGTCAAGTCGCTGCCCATGCAGACCATCACCATCGAACT < 41bp 0.51987924160697 0.724951126376955 NA NA prediction 0.41014376953997 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24580231 chr22:24580230 nonsynonymous SNV 0.041 1 20 hm7G_associated_SNPs_33054 0 0 0 0 1 SUSD2 chr22:24580271 5'GT 24580271 Upstream 42bp 30348 chr1 201858640 201858640 1 + C T UCEC 201858641 + 201858621 201858661 41 GGCATCCGGGGTTTAACTGCGAGTTCTTCACCTTCTGCTGC GGCATCCGGGGTTTAACTGTGAGTTCTTCACCTTCTGCTGC < 41bp 0.505152273781163 0.710223067899348 NA NA prediction 0.41014158823637 Functional Gain - SHISA4 ENSG00000198892 CDS Human protein_coding chr1:201858641 chr1:201858640 synonymous SNV . 0 20 hm7G_associated_SNPs_33056 0 0 0 0 1 SHISA4 chr1:201858573 3'AG 201858573 Downstream 68bp 30349 chr1 46032551 46032551 1 + G A SKCM 46032552 + 46032532 46032572 41 CTGCACTAGGCGGTGCCTCGGGAGGAGCTGTTTGTGACATC CTGCACTAGGCGGTGCCTCAGGAGGAGCTGTTTGTGACATC < 41bp 0.49097908923551 0.705070549691524 NA NA prediction 0.410141099383049 Functional Gain - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46032552 chr1:46032551 nonsynonymous SNV 0.691 4 20 hm7G_associated_SNPs_33057 0 0 1 0 1 AKR1A1 chr1:46032541 3'AG 46032541 Downstream 11bp 30350 chr6 110083397 110083397 1 + C T UCEC 110083398 + 110083378 110083418 41 TTCTTACTGTAGCATTTTGCGGCCAGATGAAAAGTATGTAT TTCTTACTGTAGCATTTTGTGGCCAGATGAAAAGTATGTAT < 41bp 0.507655961775682 0.712724975842903 NA NA prediction 0.410138028134441 Functional Gain - FIG4 ENSG00000112367 CDS Human protein_coding chr6:110083398 chr6:110083397 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_33059 0 0 1 0 1 FIG4 chr6:110083410 5'GT 110083410 Upstream 14bp 30351 chr15 41861153 41861153 1 + C T STAD 41861154 + 41861134 41861174 41 ACCTGATCGTACGTGTGTGCGTCTCCAATGCAGTTGGCTGT ACCTGATCGTACGTGTGTGTGTCTCCAATGCAGTTGGCTGT < 41bp 0.504219781614771 0.709284543631366 NA NA prediction 0.410129524033191 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41861154 chr15:41861153 synonymous SNV . 0 20 hm7G_associated_SNPs_33063 0 0 1 0 2 TYRO3 chr15:41861076 3'AG 41861076 Downstream 78bp 30352 chr15 41861153 41861153 1 + C T STAD 41861154 + 41861134 41861174 41 ACCTGATCGTACGTGTGTGCGTCTCCAATGCAGTTGGCTGT ACCTGATCGTACGTGTGTGTGTCTCCAATGCAGTTGGCTGT < 41bp 0.504219781614771 0.709284543631366 NA NA prediction 0.410129524033191 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41861154 chr15:41861153 synonymous SNV . 0 20 hm7G_associated_SNPs_33063 0 0 1 0 2 TYRO3 chr15:41861220 5'GT 41861220 Upstream 68bp 30353 chr3 133475812 133475812 1 + G A rs1799899 133475813 + 133475793 133475833 41 CGTGGCCCGAAGTATGGGCGGCAAGGAGGACTTGATCTGGG CGTGGCCCGAAGTATGGGCAGCAAGGAGGACTTGATCTGGG < 41bp 0.553455408798027 0.758518291694489 NA NA prediction 0.410125765792924 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133475813 chr3:133475812 nonsynonymous SNV 0.613 3 20 hm7G_associated_SNPs_33066 2 1 1 0 1 TF chr3:133475853 5'GT 133475853 Upstream 42bp 30354 chr3 38520723 38520723 1 + C T SKCM 38520724 + 38520704 38520744 41 AGAAGCGAGGCTCCAACCTCGAAGTAGAGCTGTGGCTCATC AGAAGCGAGGCTCCAACCTTGAAGTAGAGCTGTGGCTCATC < 41bp 0.506661566345502 0.711723881736837 NA NA prediction 0.410124630782669 Functional Gain - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38520724 chr3:38520723 synonymous SNV . 0 20 hm7G_associated_SNPs_33067 0 0 1 0 1 ACVR2B chr3:38520762 5'GT 38520762 Upstream 40bp 30355 chr1 205031672 205031672 1 + C T COAD 205031673 + 205031653 205031693 41 ATAAGCACGGTACCATCTACGCCAGCGCCGAGCTAGCCGTG ATAAGCACGGTACCATCTATGCCAGCGCCGAGCTAGCCGTG < 41bp 0.516420991653721 0.721483082796315 NA NA prediction 0.410124182285188 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031673 chr1:205031672 synonymous SNV . 0 20 hm7G_associated_SNPs_33069 0 0 0 0 1 CNTN2 chr1:205031697 5'GT 205031697 Upstream 26bp 30356 chr5 170236616 170236616 1 + C T rs79997355 170236617 + 170236597 170236637 41 CACACTGATGATCGGGTCCCGCACTTCTCTTCCCAACACCA CACACTGATGATCGGGTCCTGCACTTCTCTTCCCAACACCA < 41bp 0.507422792060074 0.712482707967352 NA NA prediction 0.410119831814556 Functional Gain - GABRP ENSG00000094755 CDS Human protein_coding chr5:170236617 chr5:170236616 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_33071 0 0 0 0 1 GABRP chr5:170236572 3'AG 170236572 Downstream 45bp 30357 chr14 21161785 21161785 1 + C T GBM 21161786 + 21161766 21161806 41 GGTCTGGGTCTGACCCCACCGACCCTGGCTCAGGATAACTC GGTCTGGGTCTGACCCCACTGACCCTGGCTCAGGATAACTC < 41bp 0.521153546486189 0.726212110766849 NA NA prediction 0.410117128561322 Functional Gain - ANG ENSG00000214274;ENSG00000259171 CDS Human antisense chr14:21161786 chr14:21161785 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_33075 0 0 1 0 2 ANG;RNASE4 chr14:21161706 3'AG 21161706 Downstream 80bp 30358 chr14 21161785 21161785 1 + C T GBM 21161786 + 21161766 21161806 41 GGTCTGGGTCTGACCCCACCGACCCTGGCTCAGGATAACTC GGTCTGGGTCTGACCCCACTGACCCTGGCTCAGGATAACTC < 41bp 0.521153546486189 0.726212110766849 NA NA prediction 0.410117128561322 Functional Gain - ANG ENSG00000214274;ENSG00000259171 CDS Human other chr14:21161786 chr14:21161785 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_33075 0 0 1 0 2 ANG chr14:21161809 5'GT 21161809 Upstream 25bp 30359 chr9 2054607 2054607 1 + C T COAD 2054608 + 2054588 2054628 41 TTCCTTTAGACTTCAGGCCCGCATAGCTCATAGGATACAAG TTCCTTTAGACTTCAGGCCTGCATAGCTCATAGGATACAAG < 41bp 0.538344577980362 0.743403111263373 NA NA prediction 0.410117066566024 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2054608 chr9:2054607 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_33076 0 0 1 0 1 SMARCA2 chr9:2054597 3'AG 2054597 Downstream 11bp 30360 chr2 74643310 74643310 1 - C T UCEC 74643309 - 74643289 74643329 41 TCCAAGGCGGAAAAAGTGCGGCCGCCCACTGTGCCAGTGCC TCCAAGGCGGAAAAAGTGCAGCCGCCCACTGTGCCAGTGCC < 41bp 0.531722723142741 0.736776408872246 NA NA prediction 0.41010737145901 Functional Gain - C2orf81 ENSG00000159239 CDS Human protein_coding chr2:74643309 chr2:74643310 nonsynonymous SNV 0.029 2 20 hm7G_associated_SNPs_33079 0 0 0 0 1 C2orf81 chr2:74643368 3'AG 74643368 Downstream 59bp 30361 chr14 24546104 24546104 1 + C T UCEC 24546105 + 24546085 24546125 41 CAGAGATCTCAGGGGTCATCGCCTCCTACCGTCGTTGCCTG CAGAGATCTCAGGGGTCATTGCCTCCTACCGTCGTTGCCTG < 41bp 0.512990054342359 0.718042220140074 NA NA prediction 0.41010433159543 Functional Gain - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24546105 chr14:24546104 synonymous SNV . 0 20 hm7G_associated_SNPs_33082 0 0 0 0 1 CPNE6 chr14:24546088 3'AG 24546088 Downstream 17bp 30362 chr19 7523541 7523541 1 + C T COAD 7523542 + 7523522 7523562 41 GCTCCAAAGAGGACAGGAACGCCTGGATGGCCCACATCCAA GCTCCAAAGAGGACAGGAATGCCTGGATGGCCCACATCCAA < 41bp 0.528946729933565 0.733997700461198 NA NA prediction 0.410101941055266 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7523542 chr19:7523541 synonymous SNV . 0 20 hm7G_associated_SNPs_33083 0 0 1 0 1 ARHGEF18 chr19:7523576 5'GT 7523576 Upstream 36bp 30363 chr5 95067697 95067697 1 + C T UCEC 95067698 + 95067678 95067718 41 AGCAGCTTGTTGCTGAACGCGGCCAGCACGGTCGCGCGTCC AGCAGCTTGTTGCTGAACGTGGCCAGCACGGTCGCGCGTCC < 41bp 0.520878403475325 0.725929072068021 NA NA prediction 0.410101337185393 Functional Gain - RHOBTB3 ENSG00000164292 CDS Human protein_coding chr5:95067698 chr5:95067697 nonsynonymous SNV 0.925 1 20 hm7G_associated_SNPs_33085 0 0 1 0 1 RHOBTB3 chr5:95067788 5'GT 95067788 Upstream 92bp 30364 chr12 101720872 101720872 1 + C T STAD 101720873 + 101720853 101720893 41 TTTCAGAATTTTGTATGGGCGAATGAAGAATAAGACTGGGA TTTCAGAATTTTGTATGGGTGAATGAAGAATAAGACTGGGA < 41bp 0.499600001321973 0.705050219717643 NA NA prediction 0.410100439435286 Functional Gain - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101720873 chr12:101720872 stopgain 0.996 1 20 hm7G_associated_SNPs_33086 0 0 1 0 1 UTP20 chr12:101720859 3'AG 101720859 Downstream 14bp 30365 chr1 222791496 222791496 1 + G A SKCM 222791497 + 222791477 222791517 41 GTCTGGCTGCTCGTGCTCCGGCTGCCCTGGCGGGTGCCGGG GTCTGGCTGCTCGTGCTCCAGCTGCCCTGGCGGGTGCCGGG < 41bp 0.516704194027843 0.721754208081293 NA NA prediction 0.410100028106899 Functional Gain - MIA3 ENSG00000154305 CDS Human protein_coding chr1:222791497 chr1:222791496 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_33087 0 0 1 0 1 MIA3 chr1:222791585 5'GT 222791585 Upstream 90bp 30366 chr7 129096289 129096289 1 + G T LUAD 129096290 + 129096270 129096310 41 TCTTCCTTAGTTTACCCTCGGTGGATTTGAGCATCTGCAGA TCTTCCTTAGTTTACCCTCTGTGGATTTGAGCATCTGCAGA < 41bp 0.374562043461871 0.705049359631041 NA NA prediction 0.410098719262082 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129096290 chr7:129096289 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_33088 0 0 1 0 1 STRIP2 chr7:129096280 3'AG 129096280 Downstream 10bp 30367 chr2 56599551 56599551 1 + C T PRAD 56599552 + 56599532 56599572 41 AGGCTGGGGGTCCAGAGCCCGGCGGGTCTTGCAGTGGTGGC AGGCTGGGGGTCCAGAGCCTGGCGGGTCTTGCAGTGGTGGC < 41bp 0.520385357510753 0.725429579331714 NA NA prediction 0.410088443641922 Functional Gain - CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56599552 chr2:56599551 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_33091 0 0 0 0 2 CCDC85A chr2:56599479 3'AG 56599479 Downstream 73bp 30368 chr2 56599551 56599551 1 + C T PRAD 56599552 + 56599532 56599572 41 AGGCTGGGGGTCCAGAGCCCGGCGGGTCTTGCAGTGGTGGC AGGCTGGGGGTCCAGAGCCTGGCGGGTCTTGCAGTGGTGGC < 41bp 0.520385357510753 0.725429579331714 NA NA prediction 0.410088443641922 Functional Gain - CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56599552 chr2:56599551 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_33091 0 0 0 0 2 CCDC85A chr2:56599613 5'GT 56599613 Upstream 63bp 30369 chr11 93528151 93528151 1 + C T SKCM 93528152 + 93528132 93528172 41 AATTTTTGCACAGCTCTCTCGGGAAGCTGTTCAAATTAAAT AATTTTTGCACAGCTCTCTTGGGAAGCTGTTCAAATTAAAT < 41bp 0.493985969367771 0.705043958782958 NA NA prediction 0.410087917565916 Functional Gain - MED17 ENSG00000042429 CDS Human protein_coding chr11:93528152 chr11:93528151 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_33092 0 0 1 0 2 MED17 chr11:93528074 3'AG 93528074 Downstream 78bp 30370 chr11 93528151 93528151 1 + C T SKCM 93528152 + 93528132 93528172 41 AATTTTTGCACAGCTCTCTCGGGAAGCTGTTCAAATTAAAT AATTTTTGCACAGCTCTCTTGGGAAGCTGTTCAAATTAAAT < 41bp 0.493985969367771 0.705043958782958 NA NA prediction 0.410087917565916 Functional Gain - MED17 ENSG00000042429 CDS Human protein_coding chr11:93528152 chr11:93528151 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_33092 0 0 1 0 2 MED17 chr11:93528226 5'GT 93528226 Upstream 76bp 30371 chr19 14143259 14143259 1 + G A BLCA 14143260 + 14143240 14143280 41 GCGACTTGAACTGCTCGTGGGAGCCTCTTGGGGACCTGGGA GCGACTTGAACTGCTCGTGAGAGCCTCTTGGGGACCTGGGA < 41bp 0.536322378057261 0.741365839884691 NA NA prediction 0.41008692365486 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14143260 chr19:14143259 stopgain 0.942 0 20 hm7G_associated_SNPs_33093 0 0 0 0 2 IL27RA chr19:14143198 3'AG 14143198 Downstream 62bp 30372 chr19 14143259 14143259 1 + G A BLCA 14143260 + 14143240 14143280 41 GCGACTTGAACTGCTCGTGGGAGCCTCTTGGGGACCTGGGA GCGACTTGAACTGCTCGTGAGAGCCTCTTGGGGACCTGGGA < 41bp 0.536322378057261 0.741365839884691 NA NA prediction 0.41008692365486 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14143260 chr19:14143259 stopgain 0.942 0 20 hm7G_associated_SNPs_33093 0 0 0 0 2 IL27RA chr19:14143315 5'GT 14143315 Upstream 57bp 30373 chr13 41379272 41379272 1 + C T rs9577152 41379273 + 41379253 41379293 41 GTGATCTGCAGAATGCAGCCGCCGGTTCCTTCGCCTCTGCC GTGATCTGCAGAATGCAGCTGCCGGTTCCTTCGCCTCTGCC < 41bp 0.560563919471907 0.765606342943531 NA NA prediction 0.410084846943247 Functional Gain - SLC25A15 ENSG00000102743 CDS Human protein_coding chr13:41379273 chr13:41379272 synonymous SNV . 0 20 hm7G_associated_SNPs_33094 2 0 1 0 1 SLC25A15 chr13:41379254 3'AG 41379254 Downstream 19bp 30374 chr22 49042483 49042483 1 + C T STAD 49042484 + 49042464 49042504 41 GCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTGCGT GCCTCGGAGGACGATCGCCTGGCAGACCGCCCGCTGTGCGT < 41bp 0.53230570612578 0.737346821731468 NA NA prediction 0.410082231211376 Functional Gain - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49042484 chr22:49042483 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_33095 0 0 0 0 2 FAM19A5 chr22:49042409 3'AG 49042409 Downstream 75bp 30375 chr22 49042483 49042483 1 + C T STAD 49042484 + 49042464 49042504 41 GCCTCGGAGGACGATCGCCCGGCAGACCGCCCGCTGTGCGT GCCTCGGAGGACGATCGCCTGGCAGACCGCCCGCTGTGCGT < 41bp 0.53230570612578 0.737346821731468 NA NA prediction 0.410082231211376 Functional Gain - FAM19A5 ENSG00000219438 CDS Human protein_coding chr22:49042484 chr22:49042483 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_33095 0 0 0 0 2 FAM19A5 chr22:49042558 5'GT 49042558 Upstream 76bp 30376 chr19 18234816 18234816 1 + C T STAD 18234817 + 18234797 18234837 41 GCGCCCGGCGCCCGGCTGGCGCTGGCTGATGGCGTCTTGGG GCGCCCGGCGCCCGGCTGGTGCTGGCTGATGGCGTCTTGGG < 41bp 0.533027210561071 0.738066994554156 NA NA prediction 0.41007956798617 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18234817 chr19:18234816 nonsynonymous SNV 0.841 2 20 hm7G_associated_SNPs_33096 0 0 0 0 1 MAST3 chr19:18234749 3'AG 18234749 Downstream 68bp 30377 chr1 3383802 3383802 1 + C T UCEC 3383803 + 3383783 3383823 41 AGTCTGATGACGACATCCTCGATGAGTCCTCCAGCCCCGAG AGTCTGATGACGACATCCTTGATGAGTCCTCCAGCCCCGAG < 41bp 0.552522012095537 0.75755928442595 NA NA prediction 0.410074544660826 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3383803 chr1:3383802 synonymous SNV . 0 20 hm7G_associated_SNPs_33097 0 0 1 0 2 ARHGEF16 chr1:3383732 3'AG 3383732 Downstream 71bp 30378 chr1 3383802 3383802 1 + C T UCEC 3383803 + 3383783 3383823 41 AGTCTGATGACGACATCCTCGATGAGTCCTCCAGCCCCGAG AGTCTGATGACGACATCCTTGATGAGTCCTCCAGCCCCGAG < 41bp 0.552522012095537 0.75755928442595 NA NA prediction 0.410074544660826 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3383803 chr1:3383802 synonymous SNV . 0 20 hm7G_associated_SNPs_33097 0 0 1 0 2 ARHGEF16 chr1:3383901 5'GT 3383901 Upstream 100bp 30379 chr12 122186252 122186252 1 + G T LIHC 122186253 + 122186233 122186273 41 TGCAAACGCCATGCCAGTCGGGAGGAGGCGGAGCTCGTTCA TGCAAACGCCATGCCAGTCTGGAGGAGGCGGAGCTCGTTCA < 41bp 0.704879479723995 0.909916229699534 NA NA prediction 0.410073499951077 Functional Gain - TMEM120B ENSG00000188735 CDS Human protein_coding chr12:122186253 chr12:122186252 nonsynonymous SNV 0.799 0 20 hm7G_associated_SNPs_33098 0 0 1 0 2 TMEM120B chr12:122186232 3'AG 122186232 Downstream 21bp 30380 chr12 122186252 122186252 1 + G T LIHC 122186253 + 122186233 122186273 41 TGCAAACGCCATGCCAGTCGGGAGGAGGCGGAGCTCGTTCA TGCAAACGCCATGCCAGTCTGGAGGAGGCGGAGCTCGTTCA < 41bp 0.704879479723995 0.909916229699534 NA NA prediction 0.410073499951077 Functional Gain - TMEM120B ENSG00000188735 CDS Human protein_coding chr12:122186253 chr12:122186252 nonsynonymous SNV 0.799 0 20 hm7G_associated_SNPs_33098 0 0 1 0 2 TMEM120B chr12:122186348 5'GT 122186348 Upstream 97bp 30381 chr9 136517397 136517397 1 + G A STAD 136517398 + 136517378 136517418 41 TGTTGAAGAAGGTCGTGTCGGTCCATCCGGTGAGTGCCCAG TGTTGAAGAAGGTCGTGTCAGTCCATCCGGTGAGTGCCCAG < 41bp 0.525000965803659 0.730033539208643 NA NA prediction 0.410065146809969 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136517398 chr9:136517397 synonymous SNV . 0 20 hm7G_associated_SNPs_33102 0 0 0 0 2 DBH chr9:136517368 3'AG 136517368 Downstream 30bp 30382 chr9 136517397 136517397 1 + G A STAD 136517398 + 136517378 136517418 41 TGTTGAAGAAGGTCGTGTCGGTCCATCCGGTGAGTGCCCAG TGTTGAAGAAGGTCGTGTCAGTCCATCCGGTGAGTGCCCAG < 41bp 0.525000965803659 0.730033539208643 NA NA prediction 0.410065146809969 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136517398 chr9:136517397 synonymous SNV . 0 20 hm7G_associated_SNPs_33102 0 0 0 0 2 DBH chr9:136517406 5'GT 136517406 Upstream 10bp 30383 chr18 8718554 8718554 1 + C T UCEC 8718555 + 8718535 8718575 41 CTGCCGAATCCTGCAGTACCGTCTTCGGAAAGCCGAGCAGA CTGCCGAATCCTGCAGTACTGTCTTCGGAAAGCCGAGCAGA < 41bp 0.496772888740876 0.705032311096313 NA NA prediction 0.410064622192625 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8718555 chr18:8718554 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_33103 0 0 1 0 1 MTCL1 chr18:8718646 5'GT 8718646 Upstream 93bp 30384 chr7 128484728 128484728 1 + C T SKCM 128484729 + 128484709 128484749 41 TAGGTCTGTGCTTATGGCCCGGGTCTCAAGGGTGGACTGGT TAGGTCTGTGCTTATGGCCTGGGTCTCAAGGGTGGACTGGT < 41bp 0.512034892348436 0.717065783521053 NA NA prediction 0.410061782345235 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128484729 chr7:128484728 nonsynonymous SNV 0.955 5 20 hm7G_associated_SNPs_33104 0 0 0 0 1 FLNC chr7:128484712 3'AG 128484712 Downstream 17bp 30385 chr7 30831179 30831179 1 + C T LUSC 30831180 + 30831160 30831200 41 AACGGCAGGGCAGCCAGCCCGCACCTGTCAGGTGAGTGTGC AACGGCAGGGCAGCCAGCCTGCACCTGTCAGGTGAGTGTGC < 41bp 0.50342072792407 0.708447626891199 NA NA prediction 0.410053797934258 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30831180 chr7:30831179 synonymous SNV . 0 20 hm7G_associated_SNPs_33106 0 0 1 0 1 MINDY4 chr7:30831190 5'GT 30831190 Upstream 12bp 30386 chr15 101566184 101566184 1 + C T UCEC 101566185 + 101566165 101566205 41 TGCAGGCCAAGGCCCCAAACGCCGTGGTGCTGGTGGTCGGG TGCAGGCCAAGGCCCCAAATGCCGTGGTGCTGGTGGTCGGG < 41bp 0.509354821615444 0.714381707027224 NA NA prediction 0.410053770823559 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101566185 chr15:101566184 synonymous SNV . 0 20 hm7G_associated_SNPs_33107 0 0 0 0 1 LRRK1 chr15:101566170 3'AG 101566170 Downstream 15bp 30387 chr11 113215124 113215124 1 + C T rs17115380 113215125 + 113215105 113215145 41 ATCTCGCCCAGACTGAGAGCGGACGGAGCCTGATCATCAAC ATCTCGCCCAGACTGAGAGTGGACGGAGCCTGATCATCAAC < 41bp 0.545990715195875 0.75101559950286 NA NA prediction 0.410049768613971 Functional Gain - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113215125 chr11:113215124 synonymous SNV . 0 20 hm7G_associated_SNPs_33108 0 0 0 0 1 TTC12 chr11:113215162 5'GT 113215162 Upstream 39bp 30388 chr21 42767649 42767649 1 + G T LUAD 42767650 + 42767630 42767670 41 CAGCAGGAGATCACAAACAGGCTGAGCTTGGCAGAGGCAAC CAGCAGGAGATCACAAACATGCTGAGCTTGGCAGAGGCAAC < 41bp 0.379424766568715 0.70502240614144 NA NA prediction 0.41004481228288 Functional Gain - MX2 ENSG00000183486 CDS Human protein_coding chr21:42767650 chr21:42767649 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_33109 0 0 0 0 1 MX2 chr21:42767712 5'GT 42767712 Upstream 64bp 30389 chr3 129817138 129817138 1 + G A HNSC 129817139 + 129817119 129817159 41 AGTTCCGGAAGAACCTGCGGGAGTCGCAGCAGCTCTGATGG AGTTCCGGAAGAACCTGCGAGAGTCGCAGCAGCTCTGATGG < 41bp 0.503075812809904 0.708097014403779 NA NA prediction 0.410042403187749 Functional Gain - FAM86HP ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129817139 chr3:129817138 . . 0 20 hm7G_associated_SNPs_33113 0 0 0 0 1 ALG1L2 chr3:129817066 3'AG 129817066 Downstream 73bp 30390 chr3 45776775 45776775 1 + C T HNSC 45776776 + 45776756 45776796 41 TGGTGGCAAACCAGGAAGGCGTGTTCCGAAGCAATTGCATG TGGTGGCAAACCAGGAAGGTGTGTTCCGAAGCAATTGCATG < 41bp 0.518810288176561 0.723831361751538 NA NA prediction 0.410042147149954 Functional Gain - SACM1L ENSG00000211456 CDS Human protein_coding chr3:45776776 chr3:45776775 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33114 0 0 1 0 2 SACM1L chr3:45776727 3'AG 45776727 Downstream 49bp 30391 chr3 45776775 45776775 1 + C T HNSC 45776776 + 45776756 45776796 41 TGGTGGCAAACCAGGAAGGCGTGTTCCGAAGCAATTGCATG TGGTGGCAAACCAGGAAGGTGTGTTCCGAAGCAATTGCATG < 41bp 0.518810288176561 0.723831361751538 NA NA prediction 0.410042147149954 Functional Gain - SACM1L ENSG00000211456 CDS Human protein_coding chr3:45776776 chr3:45776775 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33114 0 0 1 0 2 SACM1L chr3:45776865 5'GT 45776865 Upstream 91bp 30392 chr20 3838418 3838418 1 + C T STAD 3838419 + 3838399 3838439 41 TGTGAGCTAGTTGATCTCGCGGACGAAGTGGCCTCTGTCTA TGTGAGCTAGTTGATCTCGTGGACGAAGTGGCCTCTGTCTA < 41bp 0.538708266447833 0.743728636669093 NA NA prediction 0.41004074044252 Functional Gain - MAVS ENSG00000088888 CDS Human protein_coding chr20:3838419 chr20:3838418 nonsynonymous SNV 0.387 4 20 hm7G_associated_SNPs_33115 0 0 1 0 1 MAVS chr20:3838456 5'GT 3838456 Upstream 39bp 30393 chr3 50231210 50231210 1 + G A STAD 50231211 + 50231191 50231231 41 TCTCCGACCTGGAGCGCCTGGTAACCCCGGGCTACGTGCCC TCTCCGACCTGGAGCGCCTAGTAACCCCGGGCTACGTGCCC < 41bp 0.562410174707241 0.767429771962619 NA NA prediction 0.410039194510756 Functional Gain - GNAT1 ENSG00000114349 CDS Human protein_coding chr3:50231211 chr3:50231210 synonymous SNV . 0 20 hm7G_associated_SNPs_33116 0 0 0 0 1 GNAT1 chr3:50231186 3'AG 50231186 Downstream 25bp 30394 chrX 129063378 129063378 1 + G T UCEC 129063379 + 129063359 129063399 41 GACCATCCAGACCCCCATAGGATCCACATGGAACACCCAGA GACCATCCAGACCCCCATATGATCCACATGGAACACCCAGA < 41bp 0.695483649728407 0.900498562941784 NA NA prediction 0.410029826426753 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129063379 chrX:129063378 stopgain 0.999 1 20 hm7G_associated_SNPs_33121 0 0 0 0 1 UTP14A chrX:129063312 3'AG 129063312 Downstream 67bp 30395 chr5 128326134 128326134 1 + C T READ 128326135 + 128326115 128326155 41 GTATATTGGAGAACTTTGTCGCTACCTTTGCAAACAATCTA GTATATTGGAGAACTTTGTTGCTACCTTTGCAAACAATCTA < 41bp 0.525459804406466 0.730474060798302 NA NA prediction 0.410028512783671 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128326135 chr5:128326134 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_33122 0 0 1 0 1 SLC27A6 chr5:128326157 5'GT 128326157 Upstream 24bp 30396 chr6 52317558 52317558 1 + C T SKCM 52317559 + 52317539 52317579 41 TGATCCTTACACTGAACTCCGAAAACAGCCTCTTCGTAAGT TGATCCTTACACTGAACTCTGAAAACAGCCTCTTCGTAAGT < 41bp 0.52053440119836 0.725547253854928 NA NA prediction 0.410025705313135 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52317559 chr6:52317558 stopgain 0.999 1 20 hm7G_associated_SNPs_33124 0 0 1 0 2 EFHC1 chr6:52317486 3'AG 52317486 Downstream 73bp 30397 chr6 52317558 52317558 1 + C T SKCM 52317559 + 52317539 52317579 41 TGATCCTTACACTGAACTCCGAAAACAGCCTCTTCGTAAGT TGATCCTTACACTGAACTCTGAAAACAGCCTCTTCGTAAGT < 41bp 0.52053440119836 0.725547253854928 NA NA prediction 0.410025705313135 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52317559 chr6:52317558 stopgain 0.999 1 20 hm7G_associated_SNPs_33124 0 0 1 0 2 EFHC1 chr6:52317635 5'GT 52317635 Upstream 78bp 30398 chr9 103035180 103035180 1 + C T CESC 103035181 + 103035161 103035201 41 TTATGCTTTGCTTGGTGAGCGCCATGAAGTGATCCAGTTCA TTATGCTTTGCTTGGTGAGTGCCATGAAGTGATCCAGTTCA < 41bp 0.514180728218929 0.719192508163803 NA NA prediction 0.410023559889748 Functional Gain - INVS ENSG00000119509 CDS Human protein_coding chr9:103035181 chr9:103035180 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33127 0 0 0 0 1 INVS chr9:103035146 3'AG 103035146 Downstream 35bp 30399 chr4 154553903 154553903 1 + C T UCEC 154553904 + 154553884 154553924 41 GGAGACCTGTGGCCCACTCCGCCAGTGTGTGTGACAAGCAG GGAGACCTGTGGCCCACTCTGCCAGTGTGTGTGACAAGCAG < 41bp 0.531778602395955 0.736788263226495 NA NA prediction 0.410019321661081 Functional Gain - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154553904 chr4:154553903 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_33129 0 0 1 0 2 TMEM131L chr4:154553870 3'AG 154553870 Downstream 34bp 30400 chr4 154553903 154553903 1 + C T UCEC 154553904 + 154553884 154553924 41 GGAGACCTGTGGCCCACTCCGCCAGTGTGTGTGACAAGCAG GGAGACCTGTGGCCCACTCTGCCAGTGTGTGTGACAAGCAG < 41bp 0.531778602395955 0.736788263226495 NA NA prediction 0.410019321661081 Functional Gain - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154553904 chr4:154553903 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_33129 0 0 1 0 2 TMEM131L chr4:154553990 5'GT 154553990 Upstream 88bp 30401 chr17 4643900 4643900 1 + C T SKCM 4643901 + 4643881 4643921 41 ATTTCACTGCCCTTCTCTTCGGCTGGTTCCGAAAGTTTGTG ATTTCACTGCCCTTCTCTTTGGCTGGTTCCGAAAGTTTGTG < 41bp 0.529312505823737 0.734321247440747 NA NA prediction 0.41001748323402 Functional Gain - ZMYND15 ENSG00000141497 CDS Human protein_coding chr17:4643901 chr17:4643900 synonymous SNV . 0 20 hm7G_associated_SNPs_33130 0 0 0 0 1 ZMYND15 chr17:4643814 3'AG 4643814 Downstream 87bp 30402 chr1 154315361 154315361 1 + C T SKCM 154315362 + 154315342 154315382 41 TGCTGGAGGCTGTCAAGATCGGGGACCCCCACACGCATGAG TGCTGGAGGCTGTCAAGATTGGGGACCCCCACACGCATGAG < 41bp 0.547982444652515 0.752988968201142 NA NA prediction 0.410013047097253 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154315362 chr1:154315361 synonymous SNV . 0 20 hm7G_associated_SNPs_33133 0 0 1 0 2 ATP8B2 chr1:154315272 3'AG 154315272 Downstream 90bp 30403 chr1 154315361 154315361 1 + C T SKCM 154315362 + 154315342 154315382 41 TGCTGGAGGCTGTCAAGATCGGGGACCCCCACACGCATGAG TGCTGGAGGCTGTCAAGATTGGGGACCCCCACACGCATGAG < 41bp 0.547982444652515 0.752988968201142 NA NA prediction 0.410013047097253 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154315362 chr1:154315361 synonymous SNV . 0 20 hm7G_associated_SNPs_33133 0 0 1 0 2 ATP8B2 chr1:154315437 5'GT 154315437 Upstream 77bp 30404 chr2 85529635 85529635 1 + C T COAD 85529636 + 85529616 85529656 41 GTTCCTGTCGTTCAGCACCCGCATCACATGCATCCGCTGAC GTTCCTGTCGTTCAGCACCTGCATCACATGCATCCGCTGAC < 41bp 0.486637332929547 0.705006095200767 NA NA prediction 0.410012190401534 Functional Gain - TCF7L1 ENSG00000152284 CDS Human protein_coding chr2:85529636 chr2:85529635 nonsynonymous SNV 0.522 3 20 hm7G_associated_SNPs_33134 0 0 0 0 1 TCF7L1 chr2:85529607 3'AG 85529607 Downstream 29bp 30405 chr19 17321595 17321595 1 + C T UCEC 17321596 + 17321576 17321616 41 TGGAGGAGGAGGCAGCCGGCGGCGATGAGGACCGGGAAAAG TGGAGGAGGAGGCAGCCGGTGGCGATGAGGACCGGGAAAAG < 41bp 0.493043116284713 0.705005862648644 NA NA prediction 0.410011725297287 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17321596 chr19:17321595 synonymous SNV . 0 20 hm7G_associated_SNPs_33135 0 0 1 0 1 MYO9B chr19:17321524 3'AG 17321524 Downstream 72bp 30406 chr2 33745056 33745056 1 + C T SKCM 33745057 + 33745037 33745077 41 AGAAAGCTGCAATGAATTTCGATTAAAGATCTGCTACTTCA AGAAAGCTGCAATGAATTTTGATTAAAGATCTGCTACTTCA < 41bp 0.513271773702671 0.718277528149568 NA NA prediction 0.410011508893794 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33745057 chr2:33745056 stopgain 0.954 1 20 hm7G_associated_SNPs_33136 0 0 0 0 1 RASGRP3 chr2:33745081 5'GT 33745081 Upstream 26bp 30407 chr21 47402615 47402615 1 + C T COAD 47402616 + 47402596 47402636 41 CCCTGAGGCTGAAGCCCTACGGGGCCCTCGTGGACAAAGTC CCCTGAGGCTGAAGCCCTATGGGGCCCTCGTGGACAAAGTC < 41bp 0.523904838113981 0.728908680794409 NA NA prediction 0.410007685360855 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47402616 chr21:47402615 synonymous SNV . 0 20 hm7G_associated_SNPs_33137 0 0 0 0 2 COL6A1 chr21:47402548 3'AG 47402548 Downstream 68bp 30408 chr21 47402615 47402615 1 + C T COAD 47402616 + 47402596 47402636 41 CCCTGAGGCTGAAGCCCTACGGGGCCCTCGTGGACAAAGTC CCCTGAGGCTGAAGCCCTATGGGGCCCTCGTGGACAAAGTC < 41bp 0.523904838113981 0.728908680794409 NA NA prediction 0.410007685360855 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47402616 chr21:47402615 synonymous SNV . 0 20 hm7G_associated_SNPs_33137 0 0 0 0 2 COL6A1 chr21:47402677 5'GT 47402677 Upstream 63bp 30409 chrX 103041613 103041613 1 + G T OV 103041614 + 103041594 103041634 41 AAGCTCATTCTTTGGAGCGGGTGTGTCATTGTTTGGGAAAA AAGCTCATTCTTTGGAGCGTGTGTGTCATTGTTTGGGAAAA < 41bp 0.376530410521705 0.70500221426004 NA NA prediction 0.410004428520079 Functional Gain - PLP1 ENSG00000123560 CDS Human protein_coding chrX:103041614 chrX:103041613 synonymous SNV . 0 20 hm7G_associated_SNPs_33139 0 0 1 0 1 PLP1 chrX:103041655 5'GT 103041655 Upstream 43bp 30410 chr11 117222548 117222548 1 + C T HNSC 117222549 + 117222529 117222569 41 ACTATTTCAACTTCGCCAACGGGCAGTCTATGTGGGACCAT ACTATTTCAACTTCGCCAATGGGCAGTCTATGTGGGACCAT < 41bp 0.502984503954317 0.707986416671853 NA NA prediction 0.410003825435071 Functional Gain - CEP164 ENSG00000110274 CDS Human protein_coding chr11:117222549 chr11:117222548 synonymous SNV . 0 20 hm7G_associated_SNPs_33140 0 0 1 0 1 CEP164 chr11:117222506 3'AG 117222506 Downstream 43bp 30411 chr12 98987431 98987431 1 + G A rs115763433 98987432 + 98987412 98987452 41 ACGCCGACGACGCGCGAAGGGCACACATCTTAGGACCCGGA ACGCCGACGACGCGCGAAGAGCACACATCTTAGGACCCGGA < 41bp 0.553313563823337 0.758314341919284 NA NA prediction 0.410001556191893 Functional Gain - SLC25A3 ENSG00000075415 UTR5 Human protein_coding chr12:98987432 chr12:98987431 . . 0 20 hm7G_associated_SNPs_33142 1 0 0 0 1 SLC25A3 chr12:98987518 5'GT 98987518 Upstream 88bp 30412 chr6 36238358 36238358 1 + G A ESCA 36238359 + 36238339 36238379 41 CTGCGGGACCTGGCCCCCCGGATGCTGGAAACAGCCCACCG CTGCGGGACCTGGCCCCCCAGATGCTGGAAACAGCCCACCG < 41bp 0.535543865688386 0.740541533665343 NA NA prediction 0.409995335953913 Functional Gain - PNPLA1 ENSG00000180316 CDS Human protein_coding chr6:36238359 chr6:36238358 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_33144 0 0 0 0 1 PNPLA1 chr6:36238441 5'GT 36238441 Upstream 84bp 30413 chr1 205039560 205039560 1 + G T LUAD 205039561 + 205039541 205039581 41 TATTGGTCCCCAGAGCCCAGGGTGGCCCCTACCAAGGTGTG TATTGGTCCCCAGAGCCCATGGTGGCCCCTACCAAGGTGTG < 41bp 0.355229797730634 0.704995998015985 NA NA prediction 0.409991996031969 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205039561 chr1:205039560 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_33145 0 0 0 0 1 CNTN2 chr1:205039554 3'AG 205039554 Downstream 7bp 30414 chr19 8434184 8434184 1 + C T COAD 8434185 + 8434165 8434205 41 ATCCAGCCTCAGGGGTCTCCGCCATTTTTGGTGAACTGCAA ATCCAGCCTCAGGGGTCTCTGCCATTTTTGGTGAACTGCAA < 41bp 0.4923203353497 0.704995703982768 NA NA prediction 0.409991407965536 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8434185 chr19:8434184 nonsynonymous SNV 0.063 0 20 hm7G_associated_SNPs_33146 0 0 0 0 2 ANGPTL4 chr19:8434103 3'AG 8434103 Downstream 82bp 30415 chr19 8434184 8434184 1 + C T COAD 8434185 + 8434165 8434205 41 ATCCAGCCTCAGGGGTCTCCGCCATTTTTGGTGAACTGCAA ATCCAGCCTCAGGGGTCTCTGCCATTTTTGGTGAACTGCAA < 41bp 0.4923203353497 0.704995703982768 NA NA prediction 0.409991407965536 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8434185 chr19:8434184 nonsynonymous SNV 0.063 0 20 hm7G_associated_SNPs_33146 0 0 0 0 2 ANGPTL4 chr19:8434216 5'GT 8434216 Upstream 33bp 30416 chr20 44641101 44641101 1 + G T LUAD 44641102 + 44641082 44641122 41 CGTGGCGGCGCATGAGTTCGGCCACGCGCTGGGCTTAGATC CGTGGCGGCGCATGAGTTCTGCCACGCGCTGGGCTTAGATC < 41bp 0.7092614687249 0.914256957641249 NA NA prediction 0.409990977832699 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641102 chr20:44641101 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_33147 0 0 0 0 1 MMP9 chr20:44641066 3'AG 44641066 Downstream 36bp 30417 chr20 60702669 60702669 1 + C T UCEC 60702670 + 60702650 60702690 41 TAAGCCCTCCAGCCTCAGCCGCTGCTTCCAGCCCTAGCTCT TAAGCCCTCCAGCCTCAGCTGCTGCTTCCAGCCCTAGCTCT < 41bp 0.523387539401105 0.728382803213444 NA NA prediction 0.409990527624678 Functional Gain - LSM14B ENSG00000149657 CDS Human protein_coding chr20:60702670 chr20:60702669 synonymous SNV . 0 20 hm7G_associated_SNPs_33148 0 0 1 0 1 LSM14B chr20:60702641 3'AG 60702641 Downstream 29bp 30418 chr16 14020477 14020477 1 + C T STAD 14020478 + 14020458 14020498 41 TCAAGAAGCATTCATCTTGCGCCTCTTTCGCCAGAAAAACA TCAAGAAGCATTCATCTTGTGCCTCTTTCGCCAGAAAAACA < 41bp 0.491468076920265 0.704993945871425 NA NA prediction 0.409987891742849 Functional Gain - ERCC4 ENSG00000175595 CDS Human protein_coding chr16:14020478 chr16:14020477 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_33149 0 0 0 0 1 ERCC4 chr16:14020418 3'AG 14020418 Downstream 60bp 30419 chr19 12980025 12980025 1 + G A UCEC 12980026 + 12980006 12980046 41 CCATCACCATCCAGCGCTCGGGCAAGAAGTATGGCTTCACA CCATCACCATCCAGCGCTCAGGCAAGAAGTATGGCTTCACA < 41bp 0.558041211831672 0.763033698020013 NA NA prediction 0.409984972376682 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12980026 chr19:12980025 synonymous SNV . 0 20 hm7G_associated_SNPs_33150 0 0 0 0 1 MAST1 chr19:12980109 5'GT 12980109 Upstream 85bp 30420 chr19 40719064 40719064 1 + C T SKCM 40719065 + 40719045 40719085 41 CCCCCAAACACACACCCATCGCCCCTGGCTTTGCCAGCCTC CCCCCAAACACACACCCATTGCCCCTGGCTTTGCCAGCCTC < 41bp 0.506185448257451 0.711176003193264 NA NA prediction 0.409981109871625 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40719065 chr19:40719064 synonymous SNV . 0 20 hm7G_associated_SNPs_33152 0 0 1 0 2 MAP3K10 chr19:40718983 3'AG 40718983 Downstream 82bp 30421 chr19 40719064 40719064 1 + C T SKCM 40719065 + 40719045 40719085 41 CCCCCAAACACACACCCATCGCCCCTGGCTTTGCCAGCCTC CCCCCAAACACACACCCATTGCCCCTGGCTTTGCCAGCCTC < 41bp 0.506185448257451 0.711176003193264 NA NA prediction 0.409981109871625 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40719065 chr19:40719064 synonymous SNV . 0 20 hm7G_associated_SNPs_33152 0 0 1 0 2 MAP3K10 chr19:40719095 5'GT 40719095 Upstream 32bp 30422 chr2 239306240 239306240 1 + C T STAD 239306241 + 239306221 239306261 41 TGGACTACATCCAGGAAGACGTGGATGCCATGCAGAATGAG TGGACTACATCCAGGAAGATGTGGATGCCATGCAGAATGAG < 41bp 0.504594546952705 0.709584659065531 NA NA prediction 0.409980224225653 Functional Gain - TRAF3IP1 ENSG00000204104 CDS Human protein_coding chr2:239306241 chr2:239306240 synonymous SNV . 0 20 hm7G_associated_SNPs_33153 0 0 1 0 1 TRAF3IP1 chr2:239306320 5'GT 239306320 Upstream 81bp 30423 chr2 69002356 69002356 1 + G A STAD 69002357 + 69002337 69002377 41 CTGTTCCTCTCTATAGCTCGGTCAAGGAGTGTGATGACTGG CTGTTCCTCTCTATAGCTCAGTCAAGGAGTGTGATGACTGG < 41bp 0.507836416378999 0.71282616723853 NA NA prediction 0.409979501719063 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002357 chr2:69002356 nonsynonymous SNV 0.876 4 20 hm7G_associated_SNPs_33155 0 0 0 0 1 ARHGAP25 chr2:69002353 3'AG 69002353 Downstream 4bp 30424 chrX 9682977 9682977 1 + C T rs144295789 9682978 + 9682958 9682998 41 ACAGCTACCGAGGCACTGGCGGCATCTTCGAGGTGTGCTGG ACAGCTACCGAGGCACTGGTGGCATCTTCGAGGTGTGCTGG < 41bp 0.526694905132222 0.731683078726099 NA NA prediction 0.409976347187755 Functional Gain - TBL1X ENSG00000101849 CDS Human protein_coding chrX:9682978 chrX:9682977 synonymous SNV . 0 20 hm7G_associated_SNPs_33157 0 0 0 0 1 TBL1X chrX:9683043 5'GT 9683043 Upstream 67bp 30425 chr14 95053772 95053772 1 + C T LUSC 95053773 + 95053753 95053793 41 CCTTCACCGCCACCACCCCCGGGAGATGAAGAAGAGAGTCG CCTTCACCGCCACCACCCCTGGGAGATGAAGAAGAGAGTCG < 41bp 0.510090759378651 0.715077061586797 NA NA prediction 0.409972604416291 Functional Gain - SERPINA5 ENSG00000188488 CDS Human protein_coding chr14:95053773 chr14:95053772 nonsynonymous SNV 0.011 1 20 hm7G_associated_SNPs_33158 0 0 1 0 1 SERPINA5 chr14:95053683 3'AG 95053683 Downstream 90bp 30426 chr12 122674827 122674827 1 + C T COAD 122674828 + 122674808 122674848 41 ACTACCGCGGCCTCACCATCGACAGCCTGGCCCAGCTCTGC ACTACCGCGGCCTCACCATTGACAGCCTGGCCCAGCTCTGC < 41bp 0.514000088899718 0.718986258874885 NA NA prediction 0.409972339950333 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122674828 chr12:122674827 synonymous SNV . 0 20 hm7G_associated_SNPs_33159 0 0 0 0 1 LRRC43 chr12:122674915 5'GT 122674915 Upstream 89bp 30427 chr19 19448016 19448016 1 + C T UCEC 19448017 + 19447997 19448037 41 AAGCCGCTGCTGCGGAAGGCGATCCAGATCTCACAGCAGAC AAGCCGCTGCTGCGGAAGGTGATCCAGATCTCACAGCAGAC < 41bp 0.56229761098522 0.767282417495833 NA NA prediction 0.409969613021225 Functional Gain - MAU2 ENSG00000129933 CDS Human protein_coding chr19:19448017 chr19:19448016 nonsynonymous SNV 0.789 4 20 hm7G_associated_SNPs_33161 0 0 1 0 2 MAU2 chr19:19447979 3'AG 19447979 Downstream 38bp 30428 chr19 19448016 19448016 1 + C T UCEC 19448017 + 19447997 19448037 41 AAGCCGCTGCTGCGGAAGGCGATCCAGATCTCACAGCAGAC AAGCCGCTGCTGCGGAAGGTGATCCAGATCTCACAGCAGAC < 41bp 0.56229761098522 0.767282417495833 NA NA prediction 0.409969613021225 Functional Gain - MAU2 ENSG00000129933 CDS Human protein_coding chr19:19448017 chr19:19448016 nonsynonymous SNV 0.789 4 20 hm7G_associated_SNPs_33161 0 0 1 0 2 MAU2 chr19:19448074 5'GT 19448074 Upstream 59bp 30429 chr14 63749933 63749933 1 + C T STAD 63749934 + 63749914 63749954 41 GGTGTGAAGCTCGCAAAAGCGGTACAGTCAGATTTGAATTT GGTGTGAAGCTCGCAAAAGTGGTACAGTCAGATTTGAATTT < 41bp 0.497872703852548 0.704982591022904 NA NA prediction 0.409965182045809 Functional Gain - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63749934 chr14:63749933 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_33162 0 0 0 0 2 RHOJ chr14:63749839 3'AG 63749839 Downstream 95bp 30430 chr14 63749933 63749933 1 + C T STAD 63749934 + 63749914 63749954 41 GGTGTGAAGCTCGCAAAAGCGGTACAGTCAGATTTGAATTT GGTGTGAAGCTCGCAAAAGTGGTACAGTCAGATTTGAATTT < 41bp 0.497872703852548 0.704982591022904 NA NA prediction 0.409965182045809 Functional Gain - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63749934 chr14:63749933 nonsynonymous SNV 0.993 1 20 hm7G_associated_SNPs_33162 0 0 0 0 2 RHOJ chr14:63749934 5'GT 63749934 Upstream 2bp 30431 chr19 17283260 17283260 1 + C T rs142767244 17283261 + 17283241 17283281 41 CTTTCATCATCCAGCACTTCGCAGGGAAGGTGAAATATCAG CTTTCATCATCCAGCACTTTGCAGGGAAGGTGAAATATCAG < 41bp 0.527639738078262 0.732619782370466 NA NA prediction 0.409960088584408 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17283261 chr19:17283260 synonymous SNV . 0 20 hm7G_associated_SNPs_33164 0 0 1 0 1 MYO9B chr19:17283287 5'GT 17283287 Upstream 28bp 30432 chr4 187078825 187078825 1 + C T rs200913933 187078826 + 187078806 187078846 41 GTGGCCCCCCGTCCGGACACGCCGAGGCTCACGGCATCTCC GTGGCCCCCCGTCCGGACATGCCGAGGCTCACGGCATCTCC < 41bp 0.531632846421651 0.736612584530782 NA NA prediction 0.409959476218263 Functional Gain - FAM149A ENSG00000109794 CDS Human protein_coding chr4:187078826 chr4:187078825 synonymous SNV . 0 20 hm7G_associated_SNPs_33165 0 0 0 0 1 FAM149A chr4:187078873 5'GT 187078873 Upstream 49bp 30433 chr19 1080106 1080106 1 + C T SKCM 1080107 + 1080087 1080127 41 ACTTTGAGCCCCACGTCTCCGCCAACGCCTGGTACCGCCAC ACTTTGAGCCCCACGTCTCTGCCAACGCCTGGTACCGCCAC < 41bp 0.508767405333182 0.713745813555859 NA NA prediction 0.409956816445353 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080107 chr19:1080106 synonymous SNV . 0 20 hm7G_associated_SNPs_33166 0 0 1 0 1 ARHGAP45 chr19:1080117 5'GT 1080117 Upstream 12bp 30434 chr6 41757059 41757059 1 + G A COAD 41757060 + 41757040 41757080 41 CTCATGGCACCTCAGCCAGGGGTGTAGCCAAGTAGGTAAGC CTCATGGCACCTCAGCCAGAGGTGTAGCCAAGTAGGTAAGC < 41bp 0.520894388965944 0.725870638972099 NA NA prediction 0.409952500012309 Functional Gain - TOMM6 ENSG00000214736 CDS Human protein_coding chr6:41757060 chr6:41757059 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_33169 0 0 1 1 2 TOMM6 chr6:41756970 3'AG 41756970 Downstream 90bp 30435 chr6 41757059 41757059 1 + G A COAD 41757060 + 41757040 41757080 41 CTCATGGCACCTCAGCCAGGGGTGTAGCCAAGTAGGTAAGC CTCATGGCACCTCAGCCAGAGGTGTAGCCAAGTAGGTAAGC < 41bp 0.520894388965944 0.725870638972099 NA NA prediction 0.409952500012309 Functional Gain - TOMM6 ENSG00000214736 CDS Human other chr6:41757060 chr6:41757059 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_33169 0 0 1 1 2 TOMM6 chr6:41757074 5'GT 41757074 Upstream 16bp 30436 chr16 846005 846005 1 + C T rs200840110 846006 + 845986 846026 41 CTGGCCAGCCTGGTGGGCACGATGCTCGCTTACAGCCTGAC CTGGCCAGCCTGGTGGGCATGATGCTCGCTTACAGCCTGAC < 41bp 0.527548596408313 0.732524585311682 NA NA prediction 0.409951977806736 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:846006 chr16:846005 nonsynonymous SNV 0.943 4 20 hm7G_associated_SNPs_33170 0 0 1 0 2 CHTF18 chr16:845947 3'AG 845947 Downstream 59bp 30437 chr16 846005 846005 1 + C T rs200840110 846006 + 845986 846026 41 CTGGCCAGCCTGGTGGGCACGATGCTCGCTTACAGCCTGAC CTGGCCAGCCTGGTGGGCATGATGCTCGCTTACAGCCTGAC < 41bp 0.527548596408313 0.732524585311682 NA NA prediction 0.409951977806736 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:846006 chr16:846005 nonsynonymous SNV 0.943 4 20 hm7G_associated_SNPs_33170 0 0 1 0 2 CHTF18 chr16:846077 5'GT 846077 Upstream 73bp 30438 chr13 23777933 23777933 1 + C T COAD 23777934 + 23777914 23777954 41 CATTTATGGCTGGAGAAAGCGCTGTCTCTACTTGTTTGTTC CATTTATGGCTGGAGAAAGTGCTGTCTCTACTTGTTTGTTC < 41bp 0.517142412457259 0.722117216921477 NA NA prediction 0.409949608928437 Functional Gain - SGCG ENSG00000102683 CDS Human protein_coding chr13:23777934 chr13:23777933 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_33171 0 0 0 0 2 SGCG chr13:23777834 3'AG 23777834 Downstream 100bp 30439 chr13 23777933 23777933 1 + C T COAD 23777934 + 23777914 23777954 41 CATTTATGGCTGGAGAAAGCGCTGTCTCTACTTGTTTGTTC CATTTATGGCTGGAGAAAGTGCTGTCTCTACTTGTTTGTTC < 41bp 0.517142412457259 0.722117216921477 NA NA prediction 0.409949608928437 Functional Gain - SGCG ENSG00000102683 CDS Human protein_coding chr13:23777934 chr13:23777933 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_33171 0 0 0 0 2 SGCG chr13:23778028 5'GT 23778028 Upstream 96bp 30440 chr9 88622345 88622345 1 + C T UCEC 88622346 + 88622326 88622366 41 CATGGTGAAAGATGCACTTCGGTCTTTTGTCAGTCCTCCGG CATGGTGAAAGATGCACTTTGGTCTTTTGTCAGTCCTCCGG < 41bp 0.526148566174888 0.731121279387868 NA NA prediction 0.40994542642596 Functional Gain - NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622346 chr9:88622345 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33174 0 0 0 0 2 NAA35 chr9:88622273 3'AG 88622273 Downstream 73bp 30441 chr9 88622345 88622345 1 + C T UCEC 88622346 + 88622326 88622366 41 CATGGTGAAAGATGCACTTCGGTCTTTTGTCAGTCCTCCGG CATGGTGAAAGATGCACTTTGGTCTTTTGTCAGTCCTCCGG < 41bp 0.526148566174888 0.731121279387868 NA NA prediction 0.40994542642596 Functional Gain - NAA35 ENSG00000135040 CDS Human protein_coding chr9:88622346 chr9:88622345 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33174 0 0 0 0 2 NAA35 chr9:88622379 5'GT 88622379 Upstream 35bp 30442 chr5 131953890 131953890 1 + G T SKCM 131953891 + 131953871 131953911 41 CTTCGAGAACCACAATTTCGGGATGCTGAGGAAAAGTATAG CTTCGAGAACCACAATTTCTGGATGCTGAGGAAAAGTATAG < 41bp 0.382057751538809 0.7049708146975 NA NA prediction 0.409941629395 Functional Gain - RAD50 ENSG00000113522 CDS Human protein_coding chr5:131953891 chr5:131953890 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_33175 0 0 1 0 1 RAD50 chr5:131953986 5'GT 131953986 Upstream 97bp 30443 chr19 11039582 11039582 1 + G T UCEC 11039583 + 11039563 11039603 41 TGGCGAAGCCGGGAGTGTGGGCGCGGCTGGGTGAGTAGCGG TGGCGAAGCCGGGAGTGTGTGCGCGGCTGGGTGAGTAGCGG < 41bp 0.691513843630032 0.896484371702117 NA NA prediction 0.409941056144171 Functional Gain - TIMM29 ENSG00000142444 CDS Human protein_coding chr19:11039583 chr19:11039582 nonsynonymous SNV 0.890 4 20 hm7G_associated_SNPs_33177 0 0 1 0 1 TIMM29 chr19:11039592 5'GT 11039592 Upstream 11bp 30444 chr11 134014272 134014272 1 + C T UCEC 134014273 + 134014253 134014293 41 AAATTGATGAGATTGTGATCGAGTTAACTGTGCAAGGTAGG AAATTGATGAGATTGTGATTGAGTTAACTGTGCAAGGTAGG < 41bp 0.514721119286583 0.719690215770798 NA NA prediction 0.40993819296843 Functional Gain - JAM3 ENSG00000166086 CDS Human protein_coding chr11:134014273 chr11:134014272 synonymous SNV . 0 20 hm7G_associated_SNPs_33178 0 0 1 0 1 JAM3 chr11:134014288 5'GT 134014288 Upstream 17bp 30445 chr7 100187909 100187909 1 - G A PAAD 100187908 - 100187888 100187928 41 GAGGCGCGGACTGAGTCTGCGACAGATGCGTCTCCACACGC GAGGCGCGGACTGAGTCTGTGACAGATGCGTCTCCACACGC < 41bp 0.488534395418617 0.704967488954967 NA NA prediction 0.409934977909934 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187908 chr7:100187909 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_33180 0 0 0 0 2 FBXO24 chr7:100187853 5'GT 100187853 Upstream 57bp 30446 chr7 100187909 100187909 1 - G A PAAD 100187908 - 100187888 100187928 41 GAGGCGCGGACTGAGTCTGCGACAGATGCGTCTCCACACGC GAGGCGCGGACTGAGTCTGTGACAGATGCGTCTCCACACGC < 41bp 0.488534395418617 0.704967488954967 NA NA prediction 0.409934977909934 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187908 chr7:100187909 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_33180 0 0 0 0 2 FBXO24 chr7:100187954 3'AG 100187954 Downstream 46bp 30447 chr1 33945280 33945280 1 + C T COAD 33945281 + 33945261 33945301 41 CTTGGTGGAGGATTGGCACCGAGAGACCAGGACTGCAGGAC CTTGGTGGAGGATTGGCACTGAGAGACCAGGACTGCAGGAC < 41bp 0.509543404728892 0.71451054052493 NA NA prediction 0.409934271592076 Functional Gain - ZSCAN20 ENSG00000121903 CDS Human protein_coding chr1:33945281 chr1:33945280 stopgain 0.930 0 20 hm7G_associated_SNPs_33182 0 0 0 0 1 ZSCAN20 chr1:33945306 5'GT 33945306 Upstream 27bp 30448 chr21 36081069 36081069 1 + C T KIRC 36081070 + 36081050 36081090 41 GTGTTTGCCAAATTCTCAGCGTTTATAAAAAACACGAAGAA GTGTTTGCCAAATTCTCAGTGTTTATAAAAAACACGAAGAA < 41bp 0.508464863320759 0.713430528821203 NA NA prediction 0.409931331000889 Functional Gain - CLIC6 ENSG00000159212 CDS Human protein_coding chr21:36081070 chr21:36081069 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_33184 0 0 0 0 1 CLIC6 chr21:36080998 3'AG 36080998 Downstream 72bp 30449 chr22 38333161 38333161 1 + C T COAD 38333162 + 38333142 38333182 41 TGTGACCCTCATTGAGCAGCGCAACGCTATCATCAACTGCC TGTGACCCTCATTGAGCAGTGCAACGCTATCATCAACTGCC < 41bp 0.509402639920016 0.714366056548503 NA NA prediction 0.409926833256973 Functional Gain - MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38333162 chr22:38333161 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_33185 0 0 1 0 2 MICALL1 chr22:38333087 3'AG 38333087 Downstream 75bp 30450 chr22 38333161 38333161 1 + C T COAD 38333162 + 38333142 38333182 41 TGTGACCCTCATTGAGCAGCGCAACGCTATCATCAACTGCC TGTGACCCTCATTGAGCAGTGCAACGCTATCATCAACTGCC < 41bp 0.509402639920016 0.714366056548503 NA NA prediction 0.409926833256973 Functional Gain - MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38333162 chr22:38333161 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_33185 0 0 1 0 2 MICALL1 chr22:38333201 5'GT 38333201 Upstream 41bp 30451 chr3 119451179 119451179 1 + G T LUAD 119451180 + 119451160 119451200 41 AAAGAGAAAGAATATAGAAGGGAAGTTGGAGAGAAGAAATA AAAGAGAAAGAATATAGAATGGAAGTTGGAGAGAAGAAATA < 41bp 0.68844728045045 0.893410150477981 NA NA prediction 0.409925740055062 Functional Gain - MAATS1 ENSG00000183833 CDS Human protein_coding chr3:119451180 chr3:119451179 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_33186 0 0 0 0 1 MAATS1 chr3:119451141 3'AG 119451141 Downstream 39bp 30452 chr1 165859599 165859599 1 + G A SKCM 165859600 + 165859580 165859620 41 AGTTCAACTTTGACCACCCGGGTGAGTCGGGCATTGAAGGG AGTTCAACTTTGACCACCCAGGTGAGTCGGGCATTGAAGGG < 41bp 0.524783486968326 0.72974073964531 NA NA prediction 0.409914505353968 Functional Gain - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165859600 chr1:165859599 synonymous SNV . 0 20 hm7G_associated_SNPs_33191 0 0 1 0 1 UCK2 chr1:165859600 5'GT 165859600 Upstream 2bp 30453 chr12 41900312 41900312 1 + C T UCEC 41900313 + 41900293 41900333 41 AGAGGCAGTGGAAGCTTTTCGCAATGCCAAGGAGCCCATTG AGAGGCAGTGGAAGCTTTTTGCAATGCCAAGGAGCCCATTG < 41bp 0.511171983300693 0.716129003597672 NA NA prediction 0.409914040593956 Functional Gain - PDZRN4 ENSG00000165966 CDS Human protein_coding chr12:41900313 chr12:41900312 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33192 0 0 0 0 1 PDZRN4 chr12:41900258 3'AG 41900258 Downstream 55bp 30454 chr8 75927084 75927084 1 + C T BRCA 75927085 + 75927065 75927105 41 TGCCCCTTACAAACATGGGCGGCCCTGTTCTGCTTGCCCAC TGCCCCTTACAAACATGGGTGGCCCTGTTCTGCTTGCCCAC < 41bp 0.528757863366104 0.733712916280052 NA NA prediction 0.409910105827896 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75927085 chr8:75927084 nonsynonymous SNV 0.838 3 20 hm7G_associated_SNPs_33193 0 0 0 0 2 CRISPLD1 chr8:75927047 3'AG 75927047 Downstream 38bp 30455 chr8 75927084 75927084 1 + C T BRCA 75927085 + 75927065 75927105 41 TGCCCCTTACAAACATGGGCGGCCCTGTTCTGCTTGCCCAC TGCCCCTTACAAACATGGGTGGCCCTGTTCTGCTTGCCCAC < 41bp 0.528757863366104 0.733712916280052 NA NA prediction 0.409910105827896 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75927085 chr8:75927084 nonsynonymous SNV 0.838 3 20 hm7G_associated_SNPs_33193 0 0 0 0 2 CRISPLD1 chr8:75927147 5'GT 75927147 Upstream 64bp 30456 chr11 65998372 65998372 1 + C T LUAD 65998373 + 65998353 65998393 41 GTGAGAGGACCAACAGTTCCGACAGCGAGCGCTCCCCAGAT GTGAGAGGACCAACAGTTCTGACAGCGAGCGCTCCCCAGAT < 41bp 0.539522981856439 0.744477072913503 NA NA prediction 0.409908182114128 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:65998373 chr11:65998372 synonymous SNV . 0 20 hm7G_associated_SNPs_33194 0 0 0 0 2 PACS1 chr11:65998276 3'AG 65998276 Downstream 97bp 30457 chr11 65998372 65998372 1 + C T LUAD 65998373 + 65998353 65998393 41 GTGAGAGGACCAACAGTTCCGACAGCGAGCGCTCCCCAGAT GTGAGAGGACCAACAGTTCTGACAGCGAGCGCTCCCCAGAT < 41bp 0.539522981856439 0.744477072913503 NA NA prediction 0.409908182114128 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:65998373 chr11:65998372 synonymous SNV . 0 20 hm7G_associated_SNPs_33194 0 0 0 0 2 PACS1 chr11:65998411 5'GT 65998411 Upstream 40bp 30458 chr1 48701407 48701407 1 + G A STAD 48701408 + 48701388 48701428 41 CGTCTCTCCCCAGGTCTGCGGGGGCTGATGATTGCCGTGAT CGTCTCTCCCCAGGTCTGCAGGGGCTGATGATTGCCGTGAT < 41bp 0.510058844015162 0.715011441937 NA NA prediction 0.409905195843675 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48701408 chr1:48701407 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_33195 0 0 1 0 1 SLC5A9 chr1:48701401 3'AG 48701401 Downstream 7bp 30459 chr10 72298670 72298670 1 + C T DLBC 72298671 + 72298651 72298691 41 GAGGACGATCTGGTCTCCCCGGACGCGCTCAGCACTGTCAG GAGGACGATCTGGTCTCCCTGGACGCGCTCAGCACTGTCAG < 41bp 0.539153963550428 0.744106420152999 NA NA prediction 0.40990491320514 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72298671 chr10:72298670 nonsynonymous SNV 0.047 0 20 hm7G_associated_SNPs_33196 0 0 1 0 2 PALD1 chr10:72298648 3'AG 72298648 Downstream 23bp 30460 chr10 72298670 72298670 1 + C T DLBC 72298671 + 72298651 72298691 41 GAGGACGATCTGGTCTCCCCGGACGCGCTCAGCACTGTCAG GAGGACGATCTGGTCTCCCTGGACGCGCTCAGCACTGTCAG < 41bp 0.539153963550428 0.744106420152999 NA NA prediction 0.40990491320514 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72298671 chr10:72298670 nonsynonymous SNV 0.047 0 20 hm7G_associated_SNPs_33196 0 0 1 0 2 PALD1 chr10:72298764 5'GT 72298764 Upstream 95bp 30461 chr1 100340950 100340950 1 + C T LUAD 100340951 + 100340931 100340971 41 GGGAAATGTGTTTTATGAACGACTGGCTGGCCATGGTCCAA GGGAAATGTGTTTTATGAATGACTGGCTGGCCATGGTCCAA < 41bp 0.496171715061959 0.704948268694432 NA NA prediction 0.409896537388865 Functional Gain - AGL ENSG00000162688 CDS Human protein_coding chr1:100340951 chr1:100340950 stopgain 0.998 1 20 hm7G_associated_SNPs_33200 2 0 1 0 2 AGL chr1:100340914 3'AG 100340914 Downstream 37bp 30462 chr1 100340950 100340950 1 + C T LUAD 100340951 + 100340931 100340971 41 GGGAAATGTGTTTTATGAACGACTGGCTGGCCATGGTCCAA GGGAAATGTGTTTTATGAATGACTGGCTGGCCATGGTCCAA < 41bp 0.496171715061959 0.704948268694432 NA NA prediction 0.409896537388865 Functional Gain - AGL ENSG00000162688 CDS Human protein_coding chr1:100340951 chr1:100340950 stopgain 0.998 1 20 hm7G_associated_SNPs_33200 2 0 1 0 2 AGL chr1:100341011 5'GT 100341011 Upstream 62bp 30463 chr5 176814850 176814850 1 + C T COAD 176814851 + 176814831 176814871 41 ATCGTGGCCCTGATGCAGGCGGGGGACAGGACTGACTTCCG ATCGTGGCCCTGATGCAGGTGGGGGACAGGACTGACTTCCG < 41bp 0.505833059997979 0.710778490248565 NA NA prediction 0.409890860501172 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176814851 chr5:176814850 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_33202 0 0 0 0 2 SLC34A1 chr5:176814763 3'AG 176814763 Downstream 88bp 30464 chr5 176814850 176814850 1 + C T COAD 176814851 + 176814831 176814871 41 ATCGTGGCCCTGATGCAGGCGGGGGACAGGACTGACTTCCG ATCGTGGCCCTGATGCAGGTGGGGGACAGGACTGACTTCCG < 41bp 0.505833059997979 0.710778490248565 NA NA prediction 0.409890860501172 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176814851 chr5:176814850 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_33202 0 0 0 0 2 SLC34A1 chr5:176814874 5'GT 176814874 Upstream 25bp 30465 chrX 152957557 152957557 1 + G T LUAD 152957558 + 152957538 152957578 41 GAAGGGGGTCAAATCCACGGGAAAGGTACCACTAGAGGCAT GAAGGGGGTCAAATCCACGTGAAAGGTACCACTAGAGGCAT < 41bp 0.349092126865444 0.704944615654066 NA NA prediction 0.409889231308133 Functional Gain - SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152957558 chrX:152957557 stopgain 0.884 0 20 hm7G_associated_SNPs_33203 0 0 1 0 1 SLC6A8 chrX:152957562 5'GT 152957562 Upstream 6bp 30466 chr12 53494620 53494620 1 + G A rs9658617 53494621 + 53494601 53494641 41 CCTCCCAGCCCAATTCTGCGGGTGTCCAAGACACTGAGATG CCTCCCAGCCCAATTCTGCAGGTGTCCAAGACACTGAGATG < 41bp 0.550220866191346 0.755163706393036 NA NA prediction 0.409885680403381 Functional Gain - IGFBP6 ENSG00000167779 CDS Human protein_coding chr12:53494621 chr12:53494620 synonymous SNV . 0 20 hm7G_associated_SNPs_33205 0 0 0 0 1 IGFBP6 chr12:53494641 5'GT 53494641 Upstream 22bp 30467 chr19 41826289 41826289 1 + G A UCEC 41826290 + 41826270 41826310 41 AGGCCTGGGTTCCCGACTCGGAGGAGAGGCTGATCCTGCGA AGGCCTGGGTTCCCGACTCAGAGGAGAGGCTGATCCTGCGA < 41bp 0.522267144923225 0.727209893362177 NA NA prediction 0.409885496877903 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41826290 chr19:41826289 synonymous SNV . 0 20 hm7G_associated_SNPs_33206 0 0 1 0 2 CCDC97 chr19:41826246 3'AG 41826246 Downstream 44bp 30468 chr19 41826289 41826289 1 + G A UCEC 41826290 + 41826270 41826310 41 AGGCCTGGGTTCCCGACTCGGAGGAGAGGCTGATCCTGCGA AGGCCTGGGTTCCCGACTCAGAGGAGAGGCTGATCCTGCGA < 41bp 0.522267144923225 0.727209893362177 NA NA prediction 0.409885496877903 Functional Gain - CCDC97 ENSG00000142039 CDS Human protein_coding chr19:41826290 chr19:41826289 synonymous SNV . 0 20 hm7G_associated_SNPs_33206 0 0 1 0 2 CCDC97 chr19:41826375 5'GT 41826375 Upstream 87bp 30469 chr16 85691162 85691162 1 + G A STAD 85691163 + 85691143 85691183 41 CAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAGGC CAGCACCTGGATATGGGCCAGCCCCCGGTGCCGGCGGAGGC < 41bp 0.54835482352912 0.753294815276498 NA NA prediction 0.409879983494756 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85691163 chr16:85691162 nonsynonymous SNV 0.943 4 20 hm7G_associated_SNPs_33208 0 0 1 0 1 GSE1 chr16:85691210 5'GT 85691210 Upstream 49bp 30470 chr2 210590502 210590502 1 + C T COAD 210590503 + 210590483 210590523 41 TGGCTCTCTGAAGAACATCCGCCACAGGCCAGGTAAATAAA TGGCTCTCTGAAGAACATCTGCCACAGGCCAGGTAAATAAA < 41bp 0.50093276670424 0.705869973365325 NA NA prediction 0.409874413322169 Functional Gain - MAP2 ENSG00000078018 CDS Human protein_coding chr2:210590503 chr2:210590502 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_33210 0 0 0 0 2 MAP2 chr2:210590433 3'AG 210590433 Downstream 70bp 30471 chr2 210590502 210590502 1 + C T COAD 210590503 + 210590483 210590523 41 TGGCTCTCTGAAGAACATCCGCCACAGGCCAGGTAAATAAA TGGCTCTCTGAAGAACATCTGCCACAGGCCAGGTAAATAAA < 41bp 0.50093276670424 0.705869973365325 NA NA prediction 0.409874413322169 Functional Gain - MAP2 ENSG00000078018 CDS Human protein_coding chr2:210590503 chr2:210590502 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_33210 0 0 0 0 2 MAP2 chr2:210590514 5'GT 210590514 Upstream 13bp 30472 chr21 17196427 17196427 1 + G T LUAD 17196428 + 17196408 17196448 41 TGAATTTAATCAGGCATTGGGAAGACCAGAAAAAATTCACA TGAATTTAATCAGGCATTGTGAAGACCAGAAAAAATTCACA < 41bp 0.385738441957651 0.704935183054229 NA NA prediction 0.409870366108458 Functional Gain - USP25 ENSG00000155313 CDS Human protein_coding chr21:17196428 chr21:17196427 stopgain 1.000 1 20 hm7G_associated_SNPs_33214 0 0 1 0 2 USP25 chr21:17196358 3'AG 17196358 Downstream 70bp 30473 chr21 17196427 17196427 1 + G T LUAD 17196428 + 17196408 17196448 41 TGAATTTAATCAGGCATTGGGAAGACCAGAAAAAATTCACA TGAATTTAATCAGGCATTGTGAAGACCAGAAAAAATTCACA < 41bp 0.385738441957651 0.704935183054229 NA NA prediction 0.409870366108458 Functional Gain - USP25 ENSG00000155313 CDS Human protein_coding chr21:17196428 chr21:17196427 stopgain 1.000 1 20 hm7G_associated_SNPs_33214 0 0 1 0 2 USP25 chr21:17196485 5'GT 17196485 Upstream 59bp 30474 chr16 23999887 23999887 1 + C T UCEC 23999888 + 23999868 23999908 41 TCACATTCTCCTGCCCTGGCGCTGACAAGGGTCCAGCCTCC TCACATTCTCCTGCCCTGGTGCTGACAAGGGTCCAGCCTCC < 41bp 0.516883445969113 0.721814070285779 NA NA prediction 0.409861248633334 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:23999888 chr16:23999887 synonymous SNV . 0 20 hm7G_associated_SNPs_33216 0 0 1 0 2 PRKCB chr16:23999829 3'AG 23999829 Downstream 59bp 30475 chr16 23999887 23999887 1 + C T UCEC 23999888 + 23999868 23999908 41 TCACATTCTCCTGCCCTGGCGCTGACAAGGGTCCAGCCTCC TCACATTCTCCTGCCCTGGTGCTGACAAGGGTCCAGCCTCC < 41bp 0.516883445969113 0.721814070285779 NA NA prediction 0.409861248633334 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:23999888 chr16:23999887 synonymous SNV . 0 20 hm7G_associated_SNPs_33216 0 0 1 0 2 PRKCB chr16:23999911 5'GT 23999911 Upstream 25bp 30476 chr9 43709751 43709751 1 + C T rs531875262 43709752 + 43709732 43709772 41 GGGGTTTTCAAGGCTTAATCGAAGAGATGGTGAGTCTGCCT GGGGTTTTCAAGGCTTAATTGAAGAGATGGTGAGTCTGCCT < 41bp 0.527290177005656 0.732219873868366 NA NA prediction 0.409859393725421 Functional Gain - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43709752 chr9:43709751 stopgain . 0 20 hm7G_associated_SNPs_33219 0 0 0 0 1 CNTNAP3B chr9:43709760 5'GT 43709760 Upstream 10bp 30477 chr11 76867729 76867729 1 + C T STAD 76867730 + 76867710 76867750 41 GAATCTGGGGCCGGGAAGACGGAGAGCACAAAGCTGATCCT GAATCTGGGGCCGGGAAGATGGAGAGCACAAAGCTGATCCT < 41bp 0.502711317323609 0.707637053370395 NA NA prediction 0.409851472093571 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76867730 chr11:76867729 nonsynonymous SNV 0.773 5 20 hm7G_associated_SNPs_33223 2 0 0 0 2 MYO7A chr11:76867706 3'AG 76867706 Downstream 24bp 30478 chr11 76867729 76867729 1 + C T STAD 76867730 + 76867710 76867750 41 GAATCTGGGGCCGGGAAGACGGAGAGCACAAAGCTGATCCT GAATCTGGGGCCGGGAAGATGGAGAGCACAAAGCTGATCCT < 41bp 0.502711317323609 0.707637053370395 NA NA prediction 0.409851472093571 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76867730 chr11:76867729 nonsynonymous SNV 0.773 5 20 hm7G_associated_SNPs_33223 2 0 0 0 2 MYO7A chr11:76867827 5'GT 76867827 Upstream 99bp 30479 chr20 62560749 62560749 1 + C T STAD 62560750 + 62560730 62560770 41 AGGAGATCAACAACGCGCACGCCATCCTCACGGACGCCACA AGGAGATCAACAACGCGCATGCCATCCTCACGGACGCCACA < 41bp 0.527586677512999 0.73251190764018 NA NA prediction 0.409850460254361 Functional Gain - DNAJC5 ENSG00000101152 CDS Human protein_coding chr20:62560750 chr20:62560749 synonymous SNV . 0 20 hm7G_associated_SNPs_33225 0 0 1 0 1 DNAJC5 chr20:62560665 3'AG 62560665 Downstream 85bp 30480 chr8 1616567 1616567 1 + C T SKCM 1616568 + 1616548 1616588 41 ACCTCCAAGCCTCTGATCTCGGTGACGGCGCAGAGCAGCAC ACCTCCAAGCCTCTGATCTTGGTGACGGCGCAGAGCAGCAC < 41bp 0.543256523045702 0.74818129742697 NA NA prediction 0.409849548762537 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1616568 chr8:1616567 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_33226 0 0 0 0 1 DLGAP2 chr8:1616495 3'AG 1616495 Downstream 73bp 30481 chr14 59108427 59108427 1 + C T rs191649775 59108428 + 59108408 59108448 41 TTTTGCAGCCCCTTGGAGGCGACCTTGAGTCTCTCAGATGG TTTTGCAGCCCCTTGGAGGTGACCTTGAGTCTCTCAGATGG < 41bp 0.497548733802982 0.704920905731868 NA NA prediction 0.409841811463736 Functional Gain - DACT1 ENSG00000165617 CDS Human protein_coding chr14:59108428 chr14:59108427 nonsynonymous SNV 0.983 3 20 hm7G_associated_SNPs_33227 0 0 0 0 1 DACT1 chr14:59108465 5'GT 59108465 Upstream 39bp 30482 chr7 8110572 8110572 1 + C T UCEC 8110573 + 8110553 8110593 41 GTTGGACATACCAGATGGTCGAAGAGCTCCACTTCCTGCTC GTTGGACATACCAGATGGTTGAAGAGCTCCACTTCCTGCTC < 41bp 0.494031410467376 0.704919165213656 NA NA prediction 0.409838330427313 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8110573 chr7:8110572 stopgain 0.995 1 20 hm7G_associated_SNPs_33228 0 0 0 0 1 GLCCI1 chr7:8110551 3'AG 8110551 Downstream 22bp 30483 chr18 77457958 77457958 1 + C T UCEC 77457959 + 77457939 77457979 41 AGACGTTGATTCACACAACCGAGCAGCACTGTCAGCAGATG AGACGTTGATTCACACAACTGAGCAGCACTGTCAGCAGATG < 41bp 0.514117567703415 0.719036704677033 NA NA prediction 0.409838273947235 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77457959 chr18:77457958 synonymous SNV . 0 20 hm7G_associated_SNPs_33229 0 0 1 0 2 CTDP1 chr18:77457860 3'AG 77457860 Downstream 99bp 30484 chr18 77457958 77457958 1 + C T UCEC 77457959 + 77457939 77457979 41 AGACGTTGATTCACACAACCGAGCAGCACTGTCAGCAGATG AGACGTTGATTCACACAACTGAGCAGCACTGTCAGCAGATG < 41bp 0.514117567703415 0.719036704677033 NA NA prediction 0.409838273947235 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77457959 chr18:77457958 synonymous SNV . 0 20 hm7G_associated_SNPs_33229 0 0 1 0 2 CTDP1 chr18:77457988 5'GT 77457988 Upstream 31bp 30485 chrX 153698380 153698380 1 + C T UCEC 153698381 + 153698361 153698401 41 TCACGGGCACCCATGATTACGCCTGACCAGGAGACAGGCAC TCACGGGCACCCATGATTATGCCTGACCAGGAGACAGGCAC < 41bp 0.537199965880285 0.742117013041147 NA NA prediction 0.409834094321725 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153698381 chrX:153698380 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_33231 0 0 0 0 1 PLXNA3 chrX:153698320 3'AG 153698320 Downstream 61bp 30486 chr12 53895879 53895879 1 + C T GBM 53895880 + 53895860 53895900 41 GGGACCAGAATAGGGAAGACGCCTGTGTACGACCTTCTCAA GGGACCAGAATAGGGAAGATGCCTGTGTACGACCTTCTCAA < 41bp 0.498316186396448 0.704915735647872 NA NA prediction 0.409831471295743 Functional Gain - TARBP2 ENSG00000139546 CDS Human protein_coding chr12:53895880 chr12:53895879 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33232 0 0 1 0 3 TARBP2 chr12:53895799 3'AG 53895799 Downstream 81bp 30487 chr12 53895879 53895879 1 + C T GBM 53895880 + 53895860 53895900 41 GGGACCAGAATAGGGAAGACGCCTGTGTACGACCTTCTCAA GGGACCAGAATAGGGAAGATGCCTGTGTACGACCTTCTCAA < 41bp 0.498316186396448 0.704915735647872 NA NA prediction 0.409831471295743 Functional Gain - TARBP2 ENSG00000139546 CDS Human protein_coding chr12:53895880 chr12:53895879 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33232 0 0 1 0 3 TARBP2 chr12:53895804 3'AG 53895804 Downstream 76bp 30488 chr12 53895879 53895879 1 + C T GBM 53895880 + 53895860 53895900 41 GGGACCAGAATAGGGAAGACGCCTGTGTACGACCTTCTCAA GGGACCAGAATAGGGAAGATGCCTGTGTACGACCTTCTCAA < 41bp 0.498316186396448 0.704915735647872 NA NA prediction 0.409831471295743 Functional Gain - TARBP2 ENSG00000139546 CDS Human protein_coding chr12:53895880 chr12:53895879 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33232 0 0 1 0 3 TARBP2 chr12:53895968 5'GT 53895968 Upstream 90bp 30489 chr10 104233618 104233618 1 + G A LAML 104233619 + 104233599 104233639 41 CCTGTAAGCTGCTGACCTTGGTGGTCACTGACCTGGTAGAC CCTGTAAGCTGCTGACCTTAGTGGTCACTGACCTGGTAGAC < 41bp 0.507164459065629 0.712079305864827 NA NA prediction 0.409829693598396 Functional Gain - MFSD13A ENSG00000138111 CDS Human protein_coding chr10:104233619 chr10:104233618 synonymous SNV . 0 20 hm7G_associated_SNPs_33233 0 0 0 0 1 MFSD13A chr10:104233576 3'AG 104233576 Downstream 43bp 30490 chr2 55074681 55074681 1 + C T COAD 55074682 + 55074662 55074702 41 TAACATGGAAGAGGCGGTTCGCAGTGTAGCTTTCAGCCCCG TAACATGGAAGAGGCGGTTTGCAGTGTAGCTTTCAGCCCCG < 41bp 0.511739155797303 0.716651865298871 NA NA prediction 0.409825419003136 Functional Gain - EML6 ENSG00000214595 CDS Human protein_coding chr2:55074682 chr2:55074681 nonsynonymous SNV 0.972 3 20 hm7G_associated_SNPs_33235 0 0 0 0 1 EML6 chr2:55074623 3'AG 55074623 Downstream 59bp 30491 chr17 73729697 73729697 1 + C T STAD 73729698 + 73729678 73729718 41 GGCACTGTGTGTGCTACGGCGAAGGCCGCTACGAGGGTCAG GGCACTGTGTGTGCTACGGTGAAGGCCGCTACGAGGGTCAG < 41bp 0.49093168813881 0.704912030674228 NA NA prediction 0.409824061348455 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73729698 chr17:73729697 synonymous SNV . 0 20 hm7G_associated_SNPs_33236 1 0 0 0 1 ITGB4 chr17:73729773 5'GT 73729773 Upstream 77bp 30492 chr7 54612403 54612403 1 + G A OV 54612404 + 54612384 54612424 41 TCCAGAGCGGCTCCGCCTCGGTGTATCTGGAGATCCAATGG TCCAGAGCGGCTCCGCCTCAGTGTATCTGGAGATCCAATGG < 41bp 0.537599374073924 0.742510822167836 NA NA prediction 0.409822896187825 Functional Gain - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54612404 chr7:54612403 synonymous SNV . 0 20 hm7G_associated_SNPs_33237 0 0 0 0 2 VSTM2A chr7:54612315 3'AG 54612315 Downstream 89bp 30493 chr7 54612403 54612403 1 + G A OV 54612404 + 54612384 54612424 41 TCCAGAGCGGCTCCGCCTCGGTGTATCTGGAGATCCAATGG TCCAGAGCGGCTCCGCCTCAGTGTATCTGGAGATCCAATGG < 41bp 0.537599374073924 0.742510822167836 NA NA prediction 0.409822896187825 Functional Gain - VSTM2A ENSG00000170419 CDS Human protein_coding chr7:54612404 chr7:54612403 synonymous SNV . 0 20 hm7G_associated_SNPs_33237 0 0 0 0 2 VSTM2A chr7:54612481 5'GT 54612481 Upstream 79bp 30494 chr1 175063316 175063316 1 + G A SKCM 175063317 + 175063297 175063337 41 CGGGCCTGAAGCCAGGAGAGGCATACAAGGTCTACGTGTGG CGGGCCTGAAGCCAGGAGAAGCATACAAGGTCTACGTGTGG < 41bp 0.493219674741549 0.704911175387425 NA NA prediction 0.409822350774851 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175063317 chr1:175063316 synonymous SNV . 0 20 hm7G_associated_SNPs_33238 0 0 0 0 1 TNN chr1:175063389 5'GT 175063389 Upstream 74bp 30495 chr3 47040323 47040323 1 + C T rs202071400 47040324 + 47040304 47040344 41 GCAGATGACGTGCAGGTCACGCAGACCATGCTGAGCTTTTT GCAGATGACGTGCAGGTCATGCAGACCATGCTGAGCTTTTT < 41bp 0.51427592161329 0.719187081285022 NA NA prediction 0.409822319343464 Functional Gain - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47040324 chr3:47040323 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_33239 0 0 0 0 1 NBEAL2 chr3:47040369 5'GT 47040369 Upstream 47bp 30496 chr6 160564616 160564616 1 + G A rs35956182 160564617 + 160564597 160564637 41 TCATGTGTGTTGGCCGAATGGGAATCACCATTGCAATACAA TCATGTGTGTTGGCCGAATAGGAATCACCATTGCAATACAA < 41bp 0.510522990992766 0.715433706966577 NA NA prediction 0.409821431947623 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160564617 chr6:160564616 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_33241 0 0 0 0 2 SLC22A1 chr6:160564573 3'AG 160564573 Downstream 44bp 30497 chr6 160564616 160564616 1 + G A rs35956182 160564617 + 160564597 160564637 41 TCATGTGTGTTGGCCGAATGGGAATCACCATTGCAATACAA TCATGTGTGTTGGCCGAATAGGAATCACCATTGCAATACAA < 41bp 0.510522990992766 0.715433706966577 NA NA prediction 0.409821431947623 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160564617 chr6:160564616 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_33241 0 0 0 0 2 SLC22A1 chr6:160564681 5'GT 160564681 Upstream 66bp 30498 chr7 4825265 4825265 1 + C T HNSC 4825266 + 4825246 4825286 41 GGGCGGGTGCGCGGGGACCCGGCCTCTGTGCGGGTGCTGCT GGGCGGGTGCGCGGGGACCTGGCCTCTGTGCGGGTGCTGCT < 41bp 0.509328480421277 0.714236221925438 NA NA prediction 0.409815483008322 Functional Gain - AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4825266 chr7:4825265 nonsynonymous SNV 0.034 0 20 hm7G_associated_SNPs_33243 0 0 1 0 1 AP5Z1 chr7:4825315 5'GT 4825315 Upstream 51bp 30499 chr2 27500628 27500628 1 + C T UCEC 27500629 + 27500609 27500649 41 TCTCCTTCCCCAGCCATTCCGCATTGCTTCCCCACCCTCCT TCTCCTTCCCCAGCCATTCTGCATTGCTTCCCCACCCTCCT < 41bp 0.504568901487896 0.709476590832507 NA NA prediction 0.409815378689223 Functional Gain - DNAJC5G ENSG00000163793 CDS Human protein_coding chr2:27500629 chr2:27500628 synonymous SNV . 0 20 hm7G_associated_SNPs_33244 0 0 0 0 1 DNAJC5G chr2:27500622 3'AG 27500622 Downstream 7bp 30500 chr1 18703336 18703336 1 + G A LUSC 18703337 + 18703317 18703357 41 GTTCACGTGGACGCGGGTTGGGAGCCGCCTCCTGGACGGCA GTTCACGTGGACGCGGGTTAGGAGCCGCCTCCTGGACGGCA < 41bp 0.551972844991368 0.756879282599642 NA NA prediction 0.409812875216548 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18703337 chr1:18703336 nonsynonymous SNV 0.906 4 20 hm7G_associated_SNPs_33246 0 0 0 0 1 IGSF21 chr1:18703294 3'AG 18703294 Downstream 43bp 30501 chr21 46893894 46893894 1 + G T ESCA 46893895 + 46893875 46893915 41 GAAGGCGATGACTCAGATGGGGTGAGTGACATCTGGGGCAC GAAGGCGATGACTCAGATGTGGTGAGTGACATCTGGGGCAC < 41bp 0.353733890535458 0.704905242094401 NA NA prediction 0.409810484188802 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46893895 chr21:46893894 nonsynonymous SNV 0.098 0 20 hm7G_associated_SNPs_33247 0 0 1 0 2 COL18A1 chr21:46893809 3'AG 46893809 Downstream 86bp 30502 chr21 46893894 46893894 1 + G T ESCA 46893895 + 46893875 46893915 41 GAAGGCGATGACTCAGATGGGGTGAGTGACATCTGGGGCAC GAAGGCGATGACTCAGATGTGGTGAGTGACATCTGGGGCAC < 41bp 0.353733890535458 0.704905242094401 NA NA prediction 0.409810484188802 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46893895 chr21:46893894 nonsynonymous SNV 0.098 0 20 hm7G_associated_SNPs_33247 0 0 1 0 2 COL18A1 chr21:46893895 5'GT 46893895 Upstream 2bp 30503 chr15 64444017 64444017 1 + G A rs569670361 64444018 + 64443998 64444038 41 GGTGGGGCCCGAGGCCGAGGGGCCCAGGCAGAGCCCGGAGA GGTGGGGCCCGAGGCCGAGAGGCCCAGGCAGAGCCCGGAGA < 41bp 0.595247122098571 0.800152089996813 NA NA prediction 0.409809935796485 Functional Gain - SNX22 ENSG00000157734 CDS Human protein_coding chr15:64444018 chr15:64444017 nonsynonymous SNV 0.988 1 20 hm7G_associated_SNPs_33248 0 0 1 0 1 SNX22 chr15:64444049 5'GT 64444049 Upstream 33bp 30504 chr1 110734624 110734624 1 + C T STAD 110734625 + 110734605 110734645 41 GCTGGACCCCCAGGTGTGGCGGGAGGCAGCTACCCAGGTCT GCTGGACCCCCAGGTGTGGTGGGAGGCAGCTACCCAGGTCT < 41bp 0.514705801939462 0.719610663185044 NA NA prediction 0.409809722491164 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110734625 chr1:110734624 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33249 0 0 0 0 1 SLC6A17 chr1:110734594 3'AG 110734594 Downstream 31bp 30505 chr12 132474601 132474601 1 + C T SKCM 132474602 + 132474582 132474622 41 GCAGACTGAGGCGGATAGCCGCCTCCACGGCCCGGGAGATA GCAGACTGAGGCGGATAGCTGCCTCCACGGCCCGGGAGATA < 41bp 0.507530839286258 0.712433290688248 NA NA prediction 0.40980490280398 Functional Gain - EP400 ENSG00000183495 CDS Human protein_coding chr12:132474602 chr12:132474601 synonymous SNV . 0 20 hm7G_associated_SNPs_33251 0 0 1 0 1 EP400 chr12:132474509 3'AG 132474509 Downstream 93bp 30506 chr11 121058602 121058602 1 + C T COAD 121058603 + 121058583 121058623 41 TGCAGTCTCCCTGACCTGTCGCTTTCACGTCACCGTCTTTA TGCAGTCTCCCTGACCTGTTGCTTTCACGTCACCGTCTTTA < 41bp 0.52533814879857 0.730239904056199 NA NA prediction 0.409803510515257 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121058603 chr11:121058602 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_33252 0 0 1 0 1 TECTA chr11:121058541 3'AG 121058541 Downstream 62bp 30507 chr19 14157003 14157003 1 + G A LGG 14157004 + 14156984 14157024 41 CAGGTGAGCTACAAAGTCTGGTTCTGGGTTGGAGGTCGTGA CAGGTGAGCTACAAAGTCTAGTTCTGGGTTGGAGGTCGTGA < 41bp 0.559618390657142 0.764518755961854 NA NA prediction 0.409800730609423 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14157004 chr19:14157003 stopgain 0.029 0 20 hm7G_associated_SNPs_33253 0 0 1 0 1 IL27RA chr19:14156966 3'AG 14156966 Downstream 38bp 30508 chr6 4937867 4937867 1 + C T COAD 4937868 + 4937848 4937888 41 GCAAGCTGGTACTGCTCAGCGCCGTTGGCAGCGTCTTCTGT GCAAGCTGGTACTGCTCAGTGCCGTTGGCAGCGTCTTCTGT < 41bp 0.514771071846028 0.719670664411168 NA NA prediction 0.40979918513028 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4937868 chr6:4937867 synonymous SNV . 0 20 hm7G_associated_SNPs_33254 0 0 1 0 1 CDYL chr6:4937799 3'AG 4937799 Downstream 69bp 30509 chr17 7188424 7188424 1 + G A THCA 7188425 + 7188405 7188445 41 AGGTGTTGTTGGTGGAGCGGGCGGGGCGCCGGACGCTCCAT AGGTGTTGTTGGTGGAGCGAGCGGGGCGCCGGACGCTCCAT < 41bp 0.581174743975541 0.786074061153196 NA NA prediction 0.409798634355311 Functional Gain - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7188425 chr17:7188424 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33255 0 0 1 0 2 SLC2A4 chr17:7188407 3'AG 7188407 Downstream 18bp 30510 chr17 7188424 7188424 1 + G A THCA 7188425 + 7188405 7188445 41 AGGTGTTGTTGGTGGAGCGGGCGGGGCGCCGGACGCTCCAT AGGTGTTGTTGGTGGAGCGAGCGGGGCGCCGGACGCTCCAT < 41bp 0.581174743975541 0.786074061153196 NA NA prediction 0.409798634355311 Functional Gain - SLC2A4 ENSG00000181856 CDS Human protein_coding chr17:7188425 chr17:7188424 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33255 0 0 1 0 2 SLC2A4 chr17:7188508 5'GT 7188508 Upstream 85bp 30511 chr15 20496662 20496662 1 + G A rs559775411 20496663 + 20496643 20496683 41 CCGAGACCACAAAGCGCCCGGCTGTGTGTGCTGCTGTGTTG CCGAGACCACAAAGCGCCCAGCTGTGTGTGCTGCTGTGTTG < 41bp 0.528165789564159 0.733063672494453 NA NA prediction 0.409795765860587 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20496663 chr15:20496662 . . 0 20 hm7G_associated_SNPs_33257 0 0 0 6 1 CHEK2P2 chr15:20496597 3'AG 20496597 Downstream 66bp 30512 chr3 38404502 38404502 1 + G A UCEC 38404503 + 38404483 38404523 41 TCCTAGCCTTGTCCGGGGCGGGCCAGGTTCGTTTGCAGCAG TCCTAGCCTTGTCCGGGGCAGGCCAGGTTCGTTTGCAGCAG < 41bp 0.526115863470344 0.731010477919177 NA NA prediction 0.409789228897665 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38404503 chr3:38404502 synonymous SNV . 0 20 hm7G_associated_SNPs_33260 0 0 1 0 2 XYLB chr3:38404428 3'AG 38404428 Downstream 75bp 30513 chr3 38404502 38404502 1 + G A UCEC 38404503 + 38404483 38404523 41 TCCTAGCCTTGTCCGGGGCGGGCCAGGTTCGTTTGCAGCAG TCCTAGCCTTGTCCGGGGCAGGCCAGGTTCGTTTGCAGCAG < 41bp 0.526115863470344 0.731010477919177 NA NA prediction 0.409789228897665 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38404503 chr3:38404502 synonymous SNV . 0 20 hm7G_associated_SNPs_33260 0 0 1 0 2 XYLB chr3:38404508 5'GT 38404508 Upstream 7bp 30514 chr12 113724816 113724816 1 + C T COAD 113724817 + 113724797 113724837 41 ACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCG ACTTCTCCGTGACAGTGTTTGCCTTCCTGGGACTGCTGGCG < 41bp 0.534485780082504 0.739379482251133 NA NA prediction 0.409787404337257 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113724817 chr12:113724816 synonymous SNV . 0 20 hm7G_associated_SNPs_33262 0 0 1 0 2 TPCN1 chr12:113724792 3'AG 113724792 Downstream 25bp 30515 chr12 113724816 113724816 1 + C T COAD 113724817 + 113724797 113724837 41 ACTTCTCCGTGACAGTGTTCGCCTTCCTGGGACTGCTGGCG ACTTCTCCGTGACAGTGTTTGCCTTCCTGGGACTGCTGGCG < 41bp 0.534485780082504 0.739379482251133 NA NA prediction 0.409787404337257 Functional Gain - TPCN1 ENSG00000186815 CDS Human protein_coding chr12:113724817 chr12:113724816 synonymous SNV . 0 20 hm7G_associated_SNPs_33262 0 0 1 0 2 TPCN1 chr12:113724899 5'GT 113724899 Upstream 84bp 30516 chr1 150529703 150529703 1 + C T UCEC 150529704 + 150529684 150529724 41 CACCCTCCAGCGTCAGGTGCGGATCCCCCAGATGCCCGCCC CACCCTCCAGCGTCAGGTGTGGATCCCCCAGATGCCCGCCC < 41bp 0.538325044155085 0.743218093330906 NA NA prediction 0.409786098351643 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150529704 chr1:150529703 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33263 0 0 1 0 1 ADAMTSL4 chr1:150529626 3'AG 150529626 Downstream 78bp 30517 chr2 11943067 11943067 1 + C T PRAD 11943068 + 11943048 11943088 41 ATCCTCCAGTGATGAGGAGCGCGCAGCTGCCAAGCCATCAA ATCCTCCAGTGATGAGGAGTGCGCAGCTGCCAAGCCATCAA < 41bp 0.51120139755732 0.71609439770487 NA NA prediction 0.409786000295099 Functional Gain - LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11943068 chr2:11943067 nonsynonymous SNV 0.735 0 20 hm7G_associated_SNPs_33264 0 0 1 0 1 LPIN1 chr2:11943159 5'GT 11943159 Upstream 93bp 30518 chrX 15554488 15554488 1 + G A STAD 15554489 + 15554469 15554509 41 ATTGCAGGCATGATCACACGGCTCCGCCACCCTGTGTCAAC ATTGCAGGCATGATCACACAGCTCCGCCACCCTGTGTCAAC < 41bp 0.520796174010232 0.725686395688571 NA NA prediction 0.409780443356678 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15554489 chrX:15554488 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_33265 0 0 0 0 2 BMX chrX:15554476 3'AG 15554476 Downstream 13bp 30519 chrX 15554488 15554488 1 + G A STAD 15554489 + 15554469 15554509 41 ATTGCAGGCATGATCACACGGCTCCGCCACCCTGTGTCAAC ATTGCAGGCATGATCACACAGCTCCGCCACCCTGTGTCAAC < 41bp 0.520796174010232 0.725686395688571 NA NA prediction 0.409780443356678 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15554489 chrX:15554488 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_33265 0 0 0 0 2 BMX chrX:15554550 5'GT 15554550 Upstream 63bp 30520 chr17 48453502 48453502 1 + C T GBM 48453503 + 48453483 48453523 41 TGCCGCTGTGTGATTGAGGCGCAGGCTGTGCCTTGCAGTGT TGCCGCTGTGTGATTGAGGTGCAGGCTGTGCCTTGCAGTGT < 41bp 0.539954344188484 0.74484436662077 NA NA prediction 0.409780044864573 Functional Gain - EME1 ENSG00000154920 CDS Human protein_coding chr17:48453503 chr17:48453502 nonsynonymous SNV 0.051 0 20 hm7G_associated_SNPs_33266 0 0 1 0 2 EME1 chr17:48453427 3'AG 48453427 Downstream 76bp 30521 chr17 48453502 48453502 1 + C T GBM 48453503 + 48453483 48453523 41 TGCCGCTGTGTGATTGAGGCGCAGGCTGTGCCTTGCAGTGT TGCCGCTGTGTGATTGAGGTGCAGGCTGTGCCTTGCAGTGT < 41bp 0.539954344188484 0.74484436662077 NA NA prediction 0.409780044864573 Functional Gain - EME1 ENSG00000154920 CDS Human protein_coding chr17:48453503 chr17:48453502 nonsynonymous SNV 0.051 0 20 hm7G_associated_SNPs_33266 0 0 1 0 2 EME1 chr17:48453554 5'GT 48453554 Upstream 53bp 30522 chr3 126732871 126732871 1 + C T STAD 126732872 + 126732852 126732892 41 TCACCTAACAGTACTCCTACGAGGGGAACGATGTCAGCGAC TCACCTAACAGTACTCCTATGAGGGGAACGATGTCAGCGAC < 41bp 0.526474710631006 0.731363791399428 NA NA prediction 0.409778161536844 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126732872 chr3:126732871 synonymous SNV . 0 20 hm7G_associated_SNPs_33267 0 0 1 0 1 PLXNA1 chr3:126732863 3'AG 126732863 Downstream 9bp 30523 chr16 304642 304642 1 + C T GBM 304643 + 304623 304663 41 CCGTGTCCAGACCGGCCGGCGTCACAGCGAATGTGGAGGAT CCGTGTCCAGACCGGCCGGTGTCACAGCGAATGTGGAGGAT < 41bp 0.507633164315368 0.712517048773627 NA NA prediction 0.409767768916517 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:304643 chr16:304642 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_33269 0 0 1 0 1 FAM234A chr16:304680 5'GT 304680 Upstream 39bp 30524 chr11 64029929 64029929 1 + G A UCEC 64029930 + 64029910 64029950 41 TGAGTACAACGGGCGCAGCGGGTACCTGCTCAAGCCGGAGT TGAGTACAACGGGCGCAGCAGGTACCTGCTCAAGCCGGAGT < 41bp 0.554778757109137 0.759662626218394 NA NA prediction 0.409767738218513 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64029930 chr11:64029929 nonsynonymous SNV 0.973 5 20 hm7G_associated_SNPs_33270 0 0 0 0 1 PLCB3 chr11:64029879 3'AG 64029879 Downstream 51bp 30525 chr16 25232824 25232824 1 + G A GBM 25232825 + 25232805 25232845 41 CCTGGCAGCCATGCTGATCGGAGGCCTCAACCTGGTGATGC CCTGGCAGCCATGCTGATCAGAGGCCTCAACCTGGTGATGC < 41bp 0.530717483730985 0.735598730688099 NA NA prediction 0.409762493914228 Functional Gain - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25232825 chr16:25232824 nonsynonymous SNV 0.795 5 20 hm7G_associated_SNPs_33272 0 0 0 0 2 AQP8 chr16:25232778 3'AG 25232778 Downstream 47bp 30526 chr16 25232824 25232824 1 + G A GBM 25232825 + 25232805 25232845 41 CCTGGCAGCCATGCTGATCGGAGGCCTCAACCTGGTGATGC CCTGGCAGCCATGCTGATCAGAGGCCTCAACCTGGTGATGC < 41bp 0.530717483730985 0.735598730688099 NA NA prediction 0.409762493914228 Functional Gain - AQP8 ENSG00000103375 CDS Human protein_coding chr16:25232825 chr16:25232824 nonsynonymous SNV 0.795 5 20 hm7G_associated_SNPs_33272 0 0 0 0 2 AQP8 chr16:25232904 5'GT 25232904 Upstream 81bp 30527 chr7 55221710 55221710 1 + C T GBM 55221711 + 55221691 55221731 41 CTCTCCTCCATAGGTCTGCCGCAAATTCCGAGACGAAGCCA CTCTCCTCCATAGGTCTGCTGCAAATTCCGAGACGAAGCCA < 41bp 0.495839934566068 0.704879431723744 NA NA prediction 0.409758863447488 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55221711 chr7:55221710 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_33273 0 0 0 0 1 EGFR chr7:55221704 3'AG 55221704 Downstream 7bp 30528 chr11 73070899 73070899 1 + C T SKCM 73070900 + 73070880 73070920 41 GGCATCCCAAGCCACCAATCGGGAGAACATCCAGAAGGCCA GGCATCCCAAGCCACCAATTGGGAGAACATCCAGAAGGCCA < 41bp 0.527425874942906 0.732303717432971 NA NA prediction 0.40975568498013 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73070900 chr11:73070899 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33277 0 0 0 0 2 ARHGEF17 chr11:73070879 3'AG 73070879 Downstream 21bp 30529 chr11 73070899 73070899 1 + C T SKCM 73070900 + 73070880 73070920 41 GGCATCCCAAGCCACCAATCGGGAGAACATCCAGAAGGCCA GGCATCCCAAGCCACCAATTGGGAGAACATCCAGAAGGCCA < 41bp 0.527425874942906 0.732303717432971 NA NA prediction 0.40975568498013 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73070900 chr11:73070899 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33277 0 0 0 0 2 ARHGEF17 chr11:73070997 5'GT 73070997 Upstream 99bp 30530 chr8 142437077 142437077 1 + G A SKCM 142437078 + 142437058 142437098 41 GGGCGCCCCCGCCCGGCAAGGTAGTGGAAGACTGGCTGAGC GGGCGCCCCCGCCCGGCAAAGTAGTGGAAGACTGGCTGAGC < 41bp 0.562373624940594 0.767250703904406 NA NA prediction 0.409754157927623 Functional Gain - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142437078 chr8:142437077 synonymous SNV . 0 20 hm7G_associated_SNPs_33278 0 0 1 0 2 PTP4A3 chr8:142437039 3'AG 142437039 Downstream 39bp 30531 chr8 142437077 142437077 1 + G A SKCM 142437078 + 142437058 142437098 41 GGGCGCCCCCGCCCGGCAAGGTAGTGGAAGACTGGCTGAGC GGGCGCCCCCGCCCGGCAAAGTAGTGGAAGACTGGCTGAGC < 41bp 0.562373624940594 0.767250703904406 NA NA prediction 0.409754157927623 Functional Gain - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142437078 chr8:142437077 synonymous SNV . 0 20 hm7G_associated_SNPs_33278 0 0 1 0 2 PTP4A3 chr8:142437169 5'GT 142437169 Upstream 93bp 30532 chr7 149416744 149416744 1 + C T UCEC 149416745 + 149416725 149416765 41 ACGTGATGCGGGAGAACTACGAGACGCTGGTCTCTGTGGGT ACGTGATGCGGGAGAACTATGAGACGCTGGTCTCTGTGGGT < 41bp 0.500087179271901 0.704964143945592 NA NA prediction 0.409753929347383 Functional Gain - KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149416745 chr7:149416744 synonymous SNV . 0 20 hm7G_associated_SNPs_33279 0 0 1 0 1 KRBA1 chr7:149416763 5'GT 149416763 Upstream 20bp 30533 chr20 62369392 62369392 1 + C T rs116144371 62369393 + 62369373 62369413 41 CAGACTGCACGAGCTGCACCGGGGCCCGCGCAGCAGCAGGG CAGACTGCACGAGCTGCACTGGGGCCCGCGCAGCAGCAGGG < 41bp 0.507464908720207 0.712341410759954 NA NA prediction 0.409753004079494 Functional Gain - LIME1 ENSG00000203896 CDS Human protein_coding chr20:62369393 chr20:62369392 nonsynonymous SNV 0.065 3 20 hm7G_associated_SNPs_33280 0 0 0 0 3 LIME1 chr20:62369326 3'AG 62369326 Downstream 67bp 30534 chr20 62369392 62369392 1 + C T rs116144371 62369393 + 62369373 62369413 41 CAGACTGCACGAGCTGCACCGGGGCCCGCGCAGCAGCAGGG CAGACTGCACGAGCTGCACTGGGGCCCGCGCAGCAGCAGGG < 41bp 0.507464908720207 0.712341410759954 NA NA prediction 0.409753004079494 Functional Gain - LIME1 ENSG00000203896 CDS Human protein_coding chr20:62369393 chr20:62369392 nonsynonymous SNV 0.065 3 20 hm7G_associated_SNPs_33280 0 0 0 0 3 LIME1 chr20:62369361 3'AG 62369361 Downstream 32bp 30535 chr20 62369392 62369392 1 + C T rs116144371 62369393 + 62369373 62369413 41 CAGACTGCACGAGCTGCACCGGGGCCCGCGCAGCAGCAGGG CAGACTGCACGAGCTGCACTGGGGCCCGCGCAGCAGCAGGG < 41bp 0.507464908720207 0.712341410759954 NA NA prediction 0.409753004079494 Functional Gain - LIME1 ENSG00000203896 CDS Human protein_coding chr20:62369393 chr20:62369392 nonsynonymous SNV 0.065 3 20 hm7G_associated_SNPs_33280 0 0 0 0 3 LIME1 chr20:62369413 5'GT 62369413 Upstream 22bp 30536 chr3 184007250 184007250 1 + G A OV 184007251 + 184007231 184007271 41 GGGATGATCAGCGAAATCCGGACCGCATTTGAGGAGGCCCT GGGATGATCAGCGAAATCCAGACCGCATTTGAGGAGGCCCT < 41bp 0.504883868261297 0.709758243824053 NA NA prediction 0.409748751125512 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184007251 chr3:184007250 nonsynonymous SNV 0.859 3 20 hm7G_associated_SNPs_33282 0 0 0 0 2 ECE2 chr3:184007225 3'AG 184007225 Downstream 26bp 30537 chr3 184007250 184007250 1 + G A OV 184007251 + 184007231 184007271 41 GGGATGATCAGCGAAATCCGGACCGCATTTGAGGAGGCCCT GGGATGATCAGCGAAATCCAGACCGCATTTGAGGAGGCCCT < 41bp 0.504883868261297 0.709758243824053 NA NA prediction 0.409748751125512 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184007251 chr3:184007250 nonsynonymous SNV 0.859 3 20 hm7G_associated_SNPs_33282 0 0 0 0 2 ECE2 chr3:184007323 5'GT 184007323 Upstream 74bp 30538 chr12 96350699 96350699 1 + C T COAD 96350700 + 96350680 96350720 41 CCCGGCGGGAGCTGGACATCGGCATCTCGGCTACCTACTGC CCCGGCGGGAGCTGGACATTGGCATCTCGGCTACCTACTGC < 41bp 0.52627614573304 0.731149069132914 NA NA prediction 0.409745846799747 Functional Gain - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96350700 chr12:96350699 synonymous SNV . 0 20 hm7G_associated_SNPs_33284 0 0 1 0 1 AMDHD1 chr12:96350740 5'GT 96350740 Upstream 42bp 30539 chr11 64029919 64029919 1 + C T UCEC 64029920 + 64029900 64029940 41 CGGGCGTTTTTGAGTACAACGGGCGCAGCGGGTACCTGCTC CGGGCGTTTTTGAGTACAATGGGCGCAGCGGGTACCTGCTC < 41bp 0.535371713185048 0.740242931460284 NA NA prediction 0.409742436550473 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64029920 chr11:64029919 synonymous SNV . 0 20 hm7G_associated_SNPs_33286 0 0 0 0 1 PLCB3 chr11:64029879 3'AG 64029879 Downstream 41bp 30540 chr1 162467994 162467994 1 + C T SARC 162467995 + 162467975 162468015 41 CCGGGGCTGCGGCCTCTGCCGCCGAGTATGGTTTCCGCAAA CCGGGGCTGCGGCCTCTGCTGCCGAGTATGGTTTCCGCAAA < 41bp 0.50829785218177 0.71316768884125 NA NA prediction 0.409739673318959 Functional Gain - UHMK1 ENSG00000152332 CDS Human protein_coding chr1:162467995 chr1:162467994 synonymous SNV . 0 20 hm7G_associated_SNPs_33288 0 0 1 0 1 UHMK1 chr1:162468058 5'GT 162468058 Upstream 65bp 30541 chr1 231403559 231403559 1 + C T LGG 231403560 + 231403540 231403580 41 TGCTGTTCTGCTTCAGAACCGGCCATCCATGGACTTTGATG TGCTGTTCTGCTTCAGAACTGGCCATCCATGGACTTTGATG < 41bp 0.514842634542585 0.719711101037863 NA NA prediction 0.409736932990556 Functional Gain - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231403560 chr1:231403559 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_33289 0 0 1 0 1 GNPAT chr1:231403649 5'GT 231403649 Upstream 91bp 30542 chr1 36367595 36367595 1 + G T LUSC 36367596 + 36367576 36367616 41 CCCTACATCCAGGAATTTGGGATCAAAGTGAAGGATGACAT CCCTACATCCAGGAATTTGTGATCAAAGTGAAGGATGACAT < 41bp 0.702791081420186 0.907658337273467 NA NA prediction 0.409734511706562 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36367596 chr1:36367595 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33290 0 0 0 0 2 AGO1 chr1:36367549 3'AG 36367549 Downstream 47bp 30543 chr1 36367595 36367595 1 + G T LUSC 36367596 + 36367576 36367616 41 CCCTACATCCAGGAATTTGGGATCAAAGTGAAGGATGACAT CCCTACATCCAGGAATTTGTGATCAAAGTGAAGGATGACAT < 41bp 0.702791081420186 0.907658337273467 NA NA prediction 0.409734511706562 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36367596 chr1:36367595 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33290 0 0 0 0 2 AGO1 chr1:36367671 5'GT 36367671 Upstream 77bp 30544 chr12 45781970 45781970 1 + C T COAD 45781971 + 45781951 45781991 41 GTTTTTGGAGTTTTGGAAGCGACGCCAGGCAGAACTTGAGT GTTTTTGGAGTTTTGGAAGTGACGCCAGGCAGAACTTGAGT < 41bp 0.529349211249848 0.734214879182274 NA NA prediction 0.40973133586485 Functional Gain - ANO6 ENSG00000177119 CDS Human protein_coding chr12:45781971 chr12:45781970 stopgain 0.995 1 20 hm7G_associated_SNPs_33291 0 0 1 0 1 ANO6 chr12:45781944 3'AG 45781944 Downstream 27bp 30545 chr12 6837123 6837123 1 + G A GBM 6837124 + 6837104 6837144 41 GACTTTGCCTCTACCTTCCGGCTGCTCACAGTGTTTGCTTA GACTTTGCCTCTACCTTCCAGCTGCTCACAGTGTTTGCTTA < 41bp 0.528088739738944 0.7329523063143 NA NA prediction 0.409727133150711 Functional Gain - COPS7A ENSG00000111652 CDS Human protein_coding chr12:6837124 chr12:6837123 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33293 0 0 1 2 2 COPS7A chr12:6837092 3'AG 6837092 Downstream 32bp 30546 chr12 6837123 6837123 1 + G A GBM 6837124 + 6837104 6837144 41 GACTTTGCCTCTACCTTCCGGCTGCTCACAGTGTTTGCTTA GACTTTGCCTCTACCTTCCAGCTGCTCACAGTGTTTGCTTA < 41bp 0.528088739738944 0.7329523063143 NA NA prediction 0.409727133150711 Functional Gain - COPS7A ENSG00000111652 CDS Human protein_coding chr12:6837124 chr12:6837123 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33293 0 0 1 2 2 COPS7A chr12:6837167 5'GT 6837167 Upstream 45bp 30547 chr4 84519302 84519302 1 + C T UCEC 84519303 + 84519283 84519323 41 GCTGGGCCATCGTCTGTGACGTGTGGTACATGCCCCCCATG GCTGGGCCATCGTCTGTGATGTGTGGTACATGCCCCCCATG < 41bp 0.503002103894836 0.707861803278061 NA NA prediction 0.409719398766449 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84519303 chr4:84519302 synonymous SNV . 0 20 hm7G_associated_SNPs_33296 0 0 0 0 2 GPAT3 chr4:84519204 3'AG 84519204 Downstream 99bp 30548 chr4 84519302 84519302 1 + C T UCEC 84519303 + 84519283 84519323 41 GCTGGGCCATCGTCTGTGACGTGTGGTACATGCCCCCCATG GCTGGGCCATCGTCTGTGATGTGTGGTACATGCCCCCCATG < 41bp 0.503002103894836 0.707861803278061 NA NA prediction 0.409719398766449 Functional Gain - GPAT3 ENSG00000138678 CDS Human protein_coding chr4:84519303 chr4:84519302 synonymous SNV . 0 20 hm7G_associated_SNPs_33296 0 0 0 0 2 GPAT3 chr4:84519332 5'GT 84519332 Upstream 31bp 30549 chr6 76419319 76419319 1 + C T SKCM 76419320 + 76419300 76419340 41 TGCTTGAAGATGAACTCGTCGACTTCTCAGAAGATCAGGAT TGCTTGAAGATGAACTCGTTGACTTCTCAGAAGATCAGGAT < 41bp 0.493516932198173 0.704858383751857 NA NA prediction 0.409716767503715 Functional Gain - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76419320 chr6:76419319 synonymous SNV . 0 20 hm7G_associated_SNPs_33298 0 0 1 0 2 SENP6 chr6:76419243 3'AG 76419243 Downstream 77bp 30550 chr6 76419319 76419319 1 + C T SKCM 76419320 + 76419300 76419340 41 TGCTTGAAGATGAACTCGTCGACTTCTCAGAAGATCAGGAT TGCTTGAAGATGAACTCGTTGACTTCTCAGAAGATCAGGAT < 41bp 0.493516932198173 0.704858383751857 NA NA prediction 0.409716767503715 Functional Gain - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76419320 chr6:76419319 synonymous SNV . 0 20 hm7G_associated_SNPs_33298 0 0 1 0 2 SENP6 chr6:76419346 5'GT 76419346 Upstream 28bp 30551 chrX 153041574 153041574 1 + C T UCEC 153041575 + 153041555 153041595 41 CCAGCCCGGGTGCTCGACACGGACACCATCACCCAGGTCAA CCAGCCCGGGTGCTCGACATGGACACCATCACCCAGGTCAA < 41bp 0.521104281018729 0.725959562802765 NA NA prediction 0.409710563568071 Functional Gain - PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153041575 chrX:153041574 nonsynonymous SNV 0.918 4 20 hm7G_associated_SNPs_33303 0 0 0 0 1 PLXNB3 chrX:153041669 5'GT 153041669 Upstream 96bp 30552 chr7 141734561 141734561 1 + G T STAD 141734562 + 141734542 141734582 41 GTTTGCAGCACATTGGTTAGGAGACAACACTGCCACCTGGG GTTTGCAGCACATTGGTTATGAGACAACACTGCCACCTGGG < 41bp 0.3647180323863 0.704854712986215 NA NA prediction 0.409709425972429 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141734562 chr7:141734561 stopgain 0.998 1 20 hm7G_associated_SNPs_33304 0 0 0 0 2 MGAM chr7:141734470 3'AG 141734470 Downstream 92bp 30553 chr7 141734561 141734561 1 + G T STAD 141734562 + 141734542 141734582 41 GTTTGCAGCACATTGGTTAGGAGACAACACTGCCACCTGGG GTTTGCAGCACATTGGTTATGAGACAACACTGCCACCTGGG < 41bp 0.3647180323863 0.704854712986215 NA NA prediction 0.409709425972429 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141734562 chr7:141734561 stopgain 0.998 1 20 hm7G_associated_SNPs_33304 0 0 0 0 2 MGAM chr7:141734641 5'GT 141734641 Upstream 81bp 30554 chr1 150477165 150477165 1 + G A COAD 150477166 + 150477146 150477186 41 GAGCAGTGCTCGGTTCTGTGGAAAGACTGTTGGGAGTGCTG GAGCAGTGCTCGGTTCTGTAGAAAGACTGTTGGGAGTGCTG < 41bp 0.509767725409953 0.714621496886185 NA NA prediction 0.409707542952465 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477166 chr1:150477165 synonymous SNV . 0 20 hm7G_associated_SNPs_33305 0 0 1 0 2 TARS2 chr1:150477108 3'AG 150477108 Downstream 58bp 30555 chr1 150477165 150477165 1 + G A COAD 150477166 + 150477146 150477186 41 GAGCAGTGCTCGGTTCTGTGGAAAGACTGTTGGGAGTGCTG GAGCAGTGCTCGGTTCTGTAGAAAGACTGTTGGGAGTGCTG < 41bp 0.509767725409953 0.714621496886185 NA NA prediction 0.409707542952465 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477166 chr1:150477165 synonymous SNV . 0 20 hm7G_associated_SNPs_33305 0 0 1 0 2 TARS2 chr1:150477209 5'GT 150477209 Upstream 45bp 30556 chr17 48614132 48614132 1 + G A rs139229070 48614133 + 48614113 48614153 41 GACAGCGGCAAGAACTGGCGGCACGTGTACAAGGCTCTAAC GACAGCGGCAAGAACTGGCAGCACGTGTACAAGGCTCTAAC < 41bp 0.48207285582543 0.704853085073186 NA NA prediction 0.409706170146372 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48614133 chr17:48614132 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_33307 0 0 0 0 1 EPN3 chr17:48614069 3'AG 48614069 Downstream 64bp 30557 chr19 52937267 52937267 1 + G A PRAD 52937268 + 52937248 52937288 41 AGGAGGAGTGGAAATGCCTGGACCCTGGGCAGAAAGCTTTA AGGAGGAGTGGAAATGCCTAGACCCTGGGCAGAAAGCTTTA < 41bp 0.523002665888013 0.727854009794475 NA NA prediction 0.409702687812923 Functional Gain - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52937268 chr19:52937267 synonymous SNV . 0 20 hm7G_associated_SNPs_33308 0 0 0 0 2 ZNF534 chr19:52937208 3'AG 52937208 Downstream 60bp 30558 chr19 52937267 52937267 1 + G A PRAD 52937268 + 52937248 52937288 41 AGGAGGAGTGGAAATGCCTGGACCCTGGGCAGAAAGCTTTA AGGAGGAGTGGAAATGCCTAGACCCTGGGCAGAAAGCTTTA < 41bp 0.523002665888013 0.727854009794475 NA NA prediction 0.409702687812923 Functional Gain - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52937268 chr19:52937267 synonymous SNV . 0 20 hm7G_associated_SNPs_33308 0 0 0 0 2 ZNF534 chr19:52937334 5'GT 52937334 Upstream 68bp 30559 chr10 13217674 13217674 1 + C T COAD 13217675 + 13217655 13217695 41 GGAAGCCTTCTCTGGTCTGCGGCTCAGGTCAGTAGCTAAAC GGAAGCCTTCTCTGGTCTGTGGCTCAGGTCAGTAGCTAAAC < 41bp 0.496352409060251 0.704850590964146 NA NA prediction 0.409701181928293 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13217675 chr10:13217674 nonsynonymous SNV 0.906 4 20 hm7G_associated_SNPs_33309 0 0 1 0 1 MCM10 chr10:13217681 5'GT 13217681 Upstream 8bp 30560 chr15 31206220 31206220 1 + C T UCEC 31206221 + 31206201 31206241 41 CAGTCCTGTTGGTCAACCTCGGCCGAATGGAGTTTCCTAGT CAGTCCTGTTGGTCAACCTTGGCCGAATGGAGTTTCCTAGT < 41bp 0.532829486486729 0.737677887833678 NA NA prediction 0.409696802693898 Functional Gain - FAN1 ENSG00000198690 CDS Human protein_coding chr15:31206221 chr15:31206220 synonymous SNV . 0 20 hm7G_associated_SNPs_33311 0 0 1 0 1 FAN1 chr15:31206294 5'GT 31206294 Upstream 75bp 30561 chr2 182322564 182322564 1 + C T rs200018098 182322565 + 182322545 182322585 41 CGGTCGTGCTGCACAGCCACGGGGCGAACCGATGGTGAGTA CGGTCGTGCTGCACAGCCATGGGGCGAACCGATGGTGAGTA < 41bp 0.510731896361333 0.715579789024534 NA NA prediction 0.409695785326401 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182322565 chr2:182322564 synonymous SNV . 0 20 hm7G_associated_SNPs_33312 0 0 0 0 1 ITGA4 chr2:182322578 5'GT 182322578 Upstream 15bp 30562 chr3 107435471 107435471 1 + C T rs150018279 107435472 + 107435452 107435492 41 AGGTTCAACTTCTTGGGGCCGATGGCCTAGAGCAAGATGTT AGGTTCAACTTCTTGGGGCTGATGGCCTAGAGCAAGATGTT < 41bp 0.526362802490104 0.731210297769042 NA NA prediction 0.409694990557876 Functional Gain - BBX ENSG00000114439 CDS Human protein_coding chr3:107435472 chr3:107435471 synonymous SNV . 0 20 hm7G_associated_SNPs_33314 0 0 1 0 1 BBX chr3:107435454 3'AG 107435454 Downstream 18bp 30563 chr7 94056539 94056539 1 + C T HNSC 94056540 + 94056520 94056560 41 CCCTGCTGGAAAAGATGGTCGCACTGGACATCCTGGTACAG CCCTGCTGGAAAAGATGGTTGCACTGGACATCCTGGTACAG < 41bp 0.518709297370094 0.723556665768926 NA NA prediction 0.409694736797664 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94056540 chr7:94056539 nonsynonymous SNV 0.942 3 20 hm7G_associated_SNPs_33315 0 0 0 0 2 COL1A2 chr7:94056500 3'AG 94056500 Downstream 40bp 30564 chr7 94056539 94056539 1 + C T HNSC 94056540 + 94056520 94056560 41 CCCTGCTGGAAAAGATGGTCGCACTGGACATCCTGGTACAG CCCTGCTGGAAAAGATGGTTGCACTGGACATCCTGGTACAG < 41bp 0.518709297370094 0.723556665768926 NA NA prediction 0.409694736797664 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94056540 chr7:94056539 nonsynonymous SNV 0.942 3 20 hm7G_associated_SNPs_33315 0 0 0 0 2 COL1A2 chr7:94056607 5'GT 94056607 Upstream 69bp 30565 chr14 104129088 104129088 1 + C T HNSC 104129089 + 104129069 104129109 41 CTGCCCAGCAGGGCGGCTACGAGATCCCCGCGCGGCTGCGG CTGCCCAGCAGGGCGGCTATGAGATCCCCGCGCGGCTGCGG < 41bp 0.518586934884959 0.723432798573364 NA NA prediction 0.409691727376811 Functional Gain - KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104129089 chr14:104129088 synonymous SNV . 0 20 hm7G_associated_SNPs_33316 0 0 1 0 1 KLC1 chr14:104129039 3'AG 104129039 Downstream 50bp 30566 chr2 231657983 231657983 1 + C T PAAD 231657984 + 231657964 231658004 41 CTCAGAAGACAAATTGGTACGAGAACTCCTACTGTTGAATA CTCAGAAGACAAATTGGTATGAGAACTCCTACTGTTGAATA < 41bp 0.507311881916516 0.712156693345268 NA NA prediction 0.409689622857504 Functional Gain - CAB39 ENSG00000135932 CDS Human protein_coding chr2:231657984 chr2:231657983 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33317 0 0 1 0 1 CAB39 chr2:231657928 3'AG 231657928 Downstream 56bp 30567 chr14 103336546 103336546 1 + C T SKCM 103336547 + 103336527 103336567 41 CTCTTTCCTAAAATGGAGTCGAGTAAAAAGATGGACTCTCC CTCTTTCCTAAAATGGAGTTGAGTAAAAAGATGGACTCTCC < 41bp 0.527612221152272 0.732455283970239 NA NA prediction 0.409686125635934 Functional Gain - TRAF3 ENSG00000131323 CDS Human protein_coding chr14:103336547 chr14:103336546 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_33319 0 0 1 0 1 TRAF3 chr14:103336522 3'AG 103336522 Downstream 25bp 30568 chr10 102509607 102509607 1 + C T LGG 102509608 + 102509588 102509628 41 GCTGGCCCACCAGGGTGTGCGGCCCTGTGACATCTCCCGGC GCTGGCCCACCAGGGTGTGTGGCCCTGTGACATCTCCCGGC < 41bp 0.503976179573568 0.708818598130654 NA NA prediction 0.409684837114173 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102509608 chr10:102509607 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_33321 0 0 0 0 1 PAX2 chr10:102509671 5'GT 102509671 Upstream 65bp 30569 chr2 11767141 11767141 1 + C T HNSC 11767142 + 11767122 11767162 41 TGTGCGGCGTCAGACGGCACGGATGAGACTGTCCAAGTACG TGTGCGGCGTCAGACGGCATGGATGAGACTGTCCAAGTACG < 41bp 0.511186777958615 0.716028398849081 NA NA prediction 0.409683241780931 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11767142 chr2:11767141 nonsynonymous SNV 0.921 4 20 hm7G_associated_SNPs_33322 0 0 1 0 2 GREB1 chr2:11767088 3'AG 11767088 Downstream 54bp 30570 chr2 11767141 11767141 1 + C T HNSC 11767142 + 11767122 11767162 41 TGTGCGGCGTCAGACGGCACGGATGAGACTGTCCAAGTACG TGTGCGGCGTCAGACGGCATGGATGAGACTGTCCAAGTACG < 41bp 0.511186777958615 0.716028398849081 NA NA prediction 0.409683241780931 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11767142 chr2:11767141 nonsynonymous SNV 0.921 4 20 hm7G_associated_SNPs_33322 0 0 1 0 2 GREB1 chr2:11767230 5'GT 11767230 Upstream 90bp 30571 chr11 64054482 64054482 1 + G A STAD 64054483 + 64054463 64054503 41 TCGGCCGGAGATGAGCCGAGGCTTGTAAGTACTCGGGACAC TCGGCCGGAGATGAGCCGAAGCTTGTAAGTACTCGGGACAC < 41bp 0.559467921378487 0.764309219180587 NA NA prediction 0.409682595604201 Functional Gain - GPR137 ENSG00000173264 CDS Human protein_coding chr11:64054483 chr11:64054482 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33323 0 0 1 0 2 GPR137 chr11:64054437 3'AG 64054437 Downstream 46bp 30572 chr11 64054482 64054482 1 + G A STAD 64054483 + 64054463 64054503 41 TCGGCCGGAGATGAGCCGAGGCTTGTAAGTACTCGGGACAC TCGGCCGGAGATGAGCCGAAGCTTGTAAGTACTCGGGACAC < 41bp 0.559467921378487 0.764309219180587 NA NA prediction 0.409682595604201 Functional Gain - GPR137 ENSG00000173264 CDS Human protein_coding chr11:64054483 chr11:64054482 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33323 0 0 1 0 2 GPR137 chr11:64054486 5'GT 64054486 Upstream 5bp 30573 chrX 107316577 107316577 1 + C T COAD 107316578 + 107316558 107316598 41 GACTTGGCAATAGTTCCTGCGAAATCGATCTCACTTCTTCA GACTTGGCAATAGTTCCTGTGAAATCGATCTCACTTCTTCA < 41bp 0.51039441902232 0.71523424882714 NA NA prediction 0.40967965960964 Functional Gain - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107316578 chrX:107316577 synonymous SNV . 0 20 hm7G_associated_SNPs_33324 0 0 0 0 2 VSIG1 chrX:107316480 3'AG 107316480 Downstream 98bp 30574 chrX 107316577 107316577 1 + C T COAD 107316578 + 107316558 107316598 41 GACTTGGCAATAGTTCCTGCGAAATCGATCTCACTTCTTCA GACTTGGCAATAGTTCCTGTGAAATCGATCTCACTTCTTCA < 41bp 0.51039441902232 0.71523424882714 NA NA prediction 0.40967965960964 Functional Gain - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107316578 chrX:107316577 synonymous SNV . 0 20 hm7G_associated_SNPs_33324 0 0 0 0 2 VSIG1 chrX:107316599 5'GT 107316599 Upstream 23bp 30575 chr3 44399286 44399286 1 + C T UCEC 44399287 + 44399267 44399307 41 CCCTTTTCAAGAGCTTTATCGGGAGCTGAAGCAGTCAATGC CCCTTTTCAAGAGCTTTATTGGGAGCTGAAGCAGTCAATGC < 41bp 0.520634946713948 0.725473958235622 NA NA prediction 0.409678023043347 Functional Gain - TCAIM ENSG00000179152 CDS Human protein_coding chr3:44399287 chr3:44399286 nonsynonymous SNV 0.803 4 20 hm7G_associated_SNPs_33325 0 0 1 0 1 TCAIM chr3:44399233 3'AG 44399233 Downstream 54bp 30576 chr17 77705082 77705082 1 + G A GBM 77705083 + 77705063 77705103 41 GGACGCCATGGCCCGAGACGGGGTGAAGGCACGCTACATGA GGACGCCATGGCCCGAGACAGGGTGAAGGCACGCTACATGA < 41bp 0.55921979449875 0.764057507830083 NA NA prediction 0.409675426662665 Functional Gain - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77705083 chr17:77705082 nonsynonymous SNV 0.812 5 20 hm7G_associated_SNPs_33327 0 0 0 0 1 ENPP7 chr17:77705154 5'GT 77705154 Upstream 73bp 30577 chr16 16184331 16184331 1 + G A UCEC 16184332 + 16184312 16184352 41 CATCATCGTCATGAGTGGCGGCAAGATCTCTGAGATGGGCT CATCATCGTCATGAGTGGCAGCAAGATCTCTGAGATGGGCT < 41bp 0.51632857247125 0.721165906686459 NA NA prediction 0.40967466843042 Functional Gain - ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16184332 chr16:16184331 nonsynonymous SNV 0.873 5 20 hm7G_associated_SNPs_33328 0 0 1 0 1 ABCC1 chr16:16184262 3'AG 16184262 Downstream 70bp 30578 chrX 152818550 152818550 1 + G A SKCM 152818551 + 152818531 152818571 41 GCTTTCGGCCTCGGGACCGGGACGACATGGTGAGGAAGATC GCTTTCGGCCTCGGGACCGAGACGACATGGTGAGGAAGATC < 41bp 0.528584958524483 0.73342228598646 NA NA prediction 0.409674654923952 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152818551 chrX:152818550 synonymous SNV . 0 20 hm7G_associated_SNPs_33329 0 0 0 0 1 ATP2B3 chrX:152818493 3'AG 152818493 Downstream 58bp 30579 chr11 61539136 61539136 1 + C T rs143193141 61539137 + 61539117 61539157 41 CCCTGGCCTCCCCAGGGTCCGCTCTCCCCGGGCCCTGGTTC CCCTGGCCTCCCCAGGGTCTGCTCTCCCCGGGCCCTGGTTC < 41bp 0.49082851962884 0.704836246748955 NA NA prediction 0.40967249349791 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61539137 chr11:61539136 nonsynonymous SNV 0.548 2 20 hm7G_associated_SNPs_33332 0 0 1 0 1 MYRF chr11:61539222 5'GT 61539222 Upstream 87bp 30580 chr6 130392142 130392142 1 + C T BRCA 130392143 + 130392123 130392163 41 AGTGATCCCATCGGGCTTTCGAGTTGGTATGAAGCTTGAGG AGTGATCCCATCGGGCTTTTGAGTTGGTATGAAGCTTGAGG < 41bp 0.526951396791091 0.731785798153624 NA NA prediction 0.409668802725067 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130392143 chr6:130392142 stopgain 1.000 1 20 hm7G_associated_SNPs_33334 0 0 0 0 1 L3MBTL3 chr6:130392121 3'AG 130392121 Downstream 22bp 30581 chr17 72443115 72443115 1 + C T LUSC 72443116 + 72443096 72443136 41 CACCAGGCGGCCACACCGCCGAAAGACGGCAAGAACTCTCA CACCAGGCGGCCACACCGCTGAAAGACGGCAAGAACTCTCA < 41bp 0.506558988372016 0.711392858635033 NA NA prediction 0.409667740526035 Functional Gain - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72443116 chr17:72443115 nonsynonymous SNV 0.077 0 20 hm7G_associated_SNPs_33335 0 0 0 0 1 GPRC5C chr17:72443137 5'GT 72443137 Upstream 23bp 30582 chr19 41060521 41060521 1 + C T UCEC 41060522 + 41060502 41060542 41 GCAGCTGTCGCGCCAGTGCCGGGCGCTGCTGGAGATGGGGC GCAGCTGTCGCGCCAGTGCTGGGCGCTGCTGGAGATGGGGC < 41bp 0.509961655470517 0.714793763705304 NA NA prediction 0.409664216469574 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41060522 chr19:41060521 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_33337 0 0 0 0 2 SPTBN4 chr19:41060422 3'AG 41060422 Downstream 100bp 30583 chr19 41060521 41060521 1 + C T UCEC 41060522 + 41060502 41060542 41 GCAGCTGTCGCGCCAGTGCCGGGCGCTGCTGGAGATGGGGC GCAGCTGTCGCGCCAGTGCTGGGCGCTGCTGGAGATGGGGC < 41bp 0.509961655470517 0.714793763705304 NA NA prediction 0.409664216469574 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41060522 chr19:41060521 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_33337 0 0 0 0 2 SPTBN4 chr19:41060552 5'GT 41060552 Upstream 32bp 30584 chr21 46896363 46896363 1 + C T UCEC 46896364 + 46896344 46896384 41 ATTCCAGAAGTGAAGAAGTCGAGGAGCAGACCACGGTGGCT ATTCCAGAAGTGAAGAAGTTGAGGAGCAGACCACGGTGGCT < 41bp 0.497280096037005 0.704829712992314 NA NA prediction 0.409659425984629 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46896364 chr21:46896363 synonymous SNV . 0 20 hm7G_associated_SNPs_33338 0 0 1 0 2 COL18A1 chr21:46896265 3'AG 46896265 Downstream 99bp 30585 chr21 46896363 46896363 1 + C T UCEC 46896364 + 46896344 46896384 41 ATTCCAGAAGTGAAGAAGTCGAGGAGCAGACCACGGTGGCT ATTCCAGAAGTGAAGAAGTTGAGGAGCAGACCACGGTGGCT < 41bp 0.497280096037005 0.704829712992314 NA NA prediction 0.409659425984629 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46896364 chr21:46896363 synonymous SNV . 0 20 hm7G_associated_SNPs_33338 0 0 1 0 2 COL18A1 chr21:46896394 5'GT 46896394 Upstream 32bp 30586 chr12 133294374 133294374 1 + C T COAD 133294375 + 133294355 133294395 41 CCCGTGTCTCATTGGAAGCCGGAAGCTGTGGTAAAAACCTC CCCGTGTCTCATTGGAAGCTGGAAGCTGTGGTAAAAACCTC < 41bp 0.509587109645601 0.714416011112725 NA NA prediction 0.409657802934246 Functional Gain - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294375 chr12:133294374 nonsynonymous SNV 0.935 3 20 hm7G_associated_SNPs_33340 0 0 1 0 2 PGAM5 chr12:133294296 3'AG 133294296 Downstream 79bp 30587 chr12 133294374 133294374 1 + C T COAD 133294375 + 133294355 133294395 41 CCCGTGTCTCATTGGAAGCCGGAAGCTGTGGTAAAAACCTC CCCGTGTCTCATTGGAAGCTGGAAGCTGTGGTAAAAACCTC < 41bp 0.509587109645601 0.714416011112725 NA NA prediction 0.409657802934246 Functional Gain - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294375 chr12:133294374 nonsynonymous SNV 0.935 3 20 hm7G_associated_SNPs_33340 0 0 1 0 2 PGAM5 chr12:133294384 5'GT 133294384 Upstream 11bp 30588 chr7 128845574 128845574 1 + C T STAD 128845575 + 128845555 128845595 41 GTTCATGGATGGTGCCCGCCGAGAGATCGTCTGCCGTGCAG GTTCATGGATGGTGCCCGCTGAGAGATCGTCTGCCGTGCAG < 41bp 0.548927477750071 0.753756063050335 NA NA prediction 0.409657170600528 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128845575 chr7:128845574 stopgain 0.987 0 20 hm7G_associated_SNPs_33341 0 0 1 0 1 SMO chr7:128845623 5'GT 128845623 Upstream 50bp 30589 chr8 39871157 39871157 1 + G A STAD 39871158 + 39871138 39871178 41 AGAGCCCCTGAAATACTCCGGCGGGAGTGCAGCTCAGAGCA AGAGCCCCTGAAATACTCCAGCGGGAGTGCAGCTCAGAGCA < 41bp 0.520397738749277 0.725226078065024 NA NA prediction 0.409656678631495 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871158 chr8:39871157 nonsynonymous SNV 0.011 5 20 hm7G_associated_SNPs_33342 0 0 0 0 2 IDO2 chr8:39871084 3'AG 39871084 Downstream 74bp 30590 chr8 39871157 39871157 1 + G A STAD 39871158 + 39871138 39871178 41 AGAGCCCCTGAAATACTCCGGCGGGAGTGCAGCTCAGAGCA AGAGCCCCTGAAATACTCCAGCGGGAGTGCAGCTCAGAGCA < 41bp 0.520397738749277 0.725226078065024 NA NA prediction 0.409656678631495 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871158 chr8:39871157 nonsynonymous SNV 0.011 5 20 hm7G_associated_SNPs_33342 0 0 0 0 2 IDO2 chr8:39871232 5'GT 39871232 Upstream 76bp 30591 chr9 96407975 96407975 1 + G A CESC 96407976 + 96407956 96407996 41 GGGCTACATGGAGGAGCACGGCTTCACCGAGCCCATCCTCG GGGCTACATGGAGGAGCACAGCTTCACCGAGCCCATCCTCG < 41bp 0.579341436941406 0.78416845765539 NA NA prediction 0.409654041427967 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407976 chr9:96407975 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_33344 0 0 1 0 2 PHF2 chr9:96407911 3'AG 96407911 Downstream 65bp 30592 chr9 96407975 96407975 1 + G A CESC 96407976 + 96407956 96407996 41 GGGCTACATGGAGGAGCACGGCTTCACCGAGCCCATCCTCG GGGCTACATGGAGGAGCACAGCTTCACCGAGCCCATCCTCG < 41bp 0.579341436941406 0.78416845765539 NA NA prediction 0.409654041427967 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96407976 chr9:96407975 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_33344 0 0 1 0 2 PHF2 chr9:96408071 5'GT 96408071 Upstream 97bp 30593 chr7 128483327 128483327 1 + C T COAD 128483328 + 128483308 128483348 41 TCAAGGTGGACCCATCCCACGATGCCAGCAAAGTCAAGGCC TCAAGGTGGACCCATCCCATGATGCCAGCAAAGTCAAGGCC < 41bp 0.533915000795903 0.738740493793583 NA NA prediction 0.409650985995359 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128483328 chr7:128483327 synonymous SNV . 0 20 hm7G_associated_SNPs_33345 0 0 0 0 2 FLNC chr7:128483283 3'AG 128483283 Downstream 45bp 30594 chr7 128483327 128483327 1 + C T COAD 128483328 + 128483308 128483348 41 TCAAGGTGGACCCATCCCACGATGCCAGCAAAGTCAAGGCC TCAAGGTGGACCCATCCCATGATGCCAGCAAAGTCAAGGCC < 41bp 0.533915000795903 0.738740493793583 NA NA prediction 0.409650985995359 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128483328 chr7:128483327 synonymous SNV . 0 20 hm7G_associated_SNPs_33345 0 0 0 0 2 FLNC chr7:128483373 5'GT 128483373 Upstream 47bp 30595 chr9 113562599 113562599 1 + C T rs200312379 113562600 + 113562580 113562620 41 TTCCAGGAGTGTGTGCTGTCGGGAAGCCAATGTGCCTGCTC TTCCAGGAGTGTGTGCTGTTGGGAAGCCAATGTGCCTGCTC < 41bp 0.498398740229237 0.704823480024713 NA NA prediction 0.409646960049425 Functional Gain - MUSK ENSG00000030304 CDS Human protein_coding chr9:113562600 chr9:113562599 synonymous SNV . 0 20 hm7G_associated_SNPs_33346 2 0 0 0 1 MUSK chr9:113562586 3'AG 113562586 Downstream 14bp 30596 chr11 36057737 36057737 1 + C T PRAD 36057738 + 36057718 36057758 41 AGCAATGGACGGTGCATCCCGGGCGCCTGGCAGTGTGACGG AGCAATGGACGGTGCATCCTGGGCGCCTGGCAGTGTGACGG < 41bp 0.496894400255567 0.704822983334726 NA NA prediction 0.409645966669452 Functional Gain - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36057738 chr11:36057737 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_33347 0 0 1 0 2 LDLRAD3 chr11:36057653 3'AG 36057653 Downstream 85bp 30597 chr11 36057737 36057737 1 + C T PRAD 36057738 + 36057718 36057758 41 AGCAATGGACGGTGCATCCCGGGCGCCTGGCAGTGTGACGG AGCAATGGACGGTGCATCCTGGGCGCCTGGCAGTGTGACGG < 41bp 0.496894400255567 0.704822983334726 NA NA prediction 0.409645966669452 Functional Gain - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36057738 chr11:36057737 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_33347 0 0 1 0 2 LDLRAD3 chr11:36057799 5'GT 36057799 Upstream 63bp 30598 chr1 94884143 94884143 1 + G A PCPG 94884144 + 94884124 94884164 41 CCGCGCCCTCGGCCTGCACGGGTAAGAAGGCCCGTAGCCGT CCGCGCCCTCGGCCTGCACAGGTAAGAAGGCCCGTAGCCGT < 41bp 0.517865458172835 0.722687782020356 NA NA prediction 0.409644647695042 Functional Gain - ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94884144 chr1:94884143 nonsynonymous SNV 0.199 1 20 hm7G_associated_SNPs_33348 0 0 1 0 1 ABCD3 chr1:94884144 5'GT 94884144 Upstream 2bp 30599 chr11 63670587 63670587 1 + C T UCEC 63670588 + 63670568 63670608 41 GAATTCCCCACTTTTGGAGCGGGCCAGCCTCGGCCAGGCCT GAATTCCCCACTTTTGGAGTGGGCCAGCCTCGGCCAGGCCT < 41bp 0.540240644791478 0.745056702173809 NA NA prediction 0.409632114764663 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63670588 chr11:63670587 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_33349 0 0 1 0 2 MARK2 chr11:63670533 3'AG 63670533 Downstream 55bp 30600 chr11 63670587 63670587 1 + C T UCEC 63670588 + 63670568 63670608 41 GAATTCCCCACTTTTGGAGCGGGCCAGCCTCGGCCAGGCCT GAATTCCCCACTTTTGGAGTGGGCCAGCCTCGGCCAGGCCT < 41bp 0.540240644791478 0.745056702173809 NA NA prediction 0.409632114764663 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63670588 chr11:63670587 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_33349 0 0 1 0 2 MARK2 chr11:63670630 5'GT 63670630 Upstream 44bp 30601 chr1 53930359 53930359 1 + C T COAD 53930360 + 53930340 53930380 41 AGCTACTACCTGCCGCCGCCGCCGCCGCCACTGCCGCCCCT AGCTACTACCTGCCGCCGCTGCCGCCGCCACTGCCGCCCCT < 41bp 0.498386908706531 0.70481578971406 NA NA prediction 0.409631579428119 Functional Gain - DMRTB1 ENSG00000143006 CDS Human protein_coding chr1:53930360 chr1:53930359 nonsynonymous SNV 0.027 2 20 hm7G_associated_SNPs_33350 0 0 0 0 1 DMRTB1 chr1:53930310 3'AG 53930310 Downstream 50bp 30602 chrX 153694763 153694763 1 + C T CESC 153694764 + 153694744 153694784 41 CCAGCCGTGGCCCGGCGTCCGGGGGCACACGGCTTACCATC CCAGCCGTGGCCCGGCGTCTGGGGGCACACGGCTTACCATC < 41bp 0.518880614205207 0.723696005334544 NA NA prediction 0.409630782258674 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153694764 chrX:153694763 synonymous SNV . 0 20 hm7G_associated_SNPs_33351 0 0 1 0 2 PLXNA3 chrX:153694719 3'AG 153694719 Downstream 45bp 30603 chrX 153694763 153694763 1 + C T CESC 153694764 + 153694744 153694784 41 CCAGCCGTGGCCCGGCGTCCGGGGGCACACGGCTTACCATC CCAGCCGTGGCCCGGCGTCTGGGGGCACACGGCTTACCATC < 41bp 0.518880614205207 0.723696005334544 NA NA prediction 0.409630782258674 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153694764 chrX:153694763 synonymous SNV . 0 20 hm7G_associated_SNPs_33351 0 0 1 0 2 PLXNA3 chrX:153694855 5'GT 153694855 Upstream 93bp 30604 chr12 108604066 108604066 1 + G A SKCM 108604067 + 108604047 108604087 41 ACCGGCTGCAGCTGGCCCAGGAGTCGGCCCGCAGGTGTACG ACCGGCTGCAGCTGGCCCAAGAGTCGGCCCGCAGGTGTACG < 41bp 0.544083610148641 0.74889862406325 NA NA prediction 0.409630027829218 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108604067 chr12:108604066 synonymous SNV . 0 20 hm7G_associated_SNPs_33352 0 0 0 0 1 WSCD2 chr12:108604082 5'GT 108604082 Upstream 17bp 30605 chr3 183955030 183955030 1 + G A COAD 183955031 + 183955011 183955051 41 CAGCTGGTACAGGCTCTGCGGAAGGCACTGGAGCCTGCTTT CAGCTGGTACAGGCTCTGCAGAAGGCACTGGAGCCTGCTTT < 41bp 0.492361116414584 0.704814401329764 NA NA prediction 0.409628802659527 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183955031 chr3:183955030 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_33353 0 0 0 0 1 VWA5B2 chr3:183955014 3'AG 183955014 Downstream 17bp 30606 chr2 234182371 234182371 1 + C T UCEC 234182372 + 234182352 234182392 41 TCCCCTCCTCTTTAGTAAGCGACTCTCGCAGCCTGCTGGAG TCCCCTCCTCTTTAGTAAGTGACTCTCGCAGCCTGCTGGAG < 41bp 0.512628667258049 0.71744149110231 NA NA prediction 0.409625647688521 Functional Gain - ATG16L1 ENSG00000085978 CDS Human protein_coding chr2:234182372 chr2:234182371 stopgain 1.000 0 20 hm7G_associated_SNPs_33354 0 0 1 0 2 ATG16L1 chr2:234182367 3'AG 234182367 Downstream 5bp 30607 chr2 234182371 234182371 1 + C T UCEC 234182372 + 234182352 234182392 41 TCCCCTCCTCTTTAGTAAGCGACTCTCGCAGCCTGCTGGAG TCCCCTCCTCTTTAGTAAGTGACTCTCGCAGCCTGCTGGAG < 41bp 0.512628667258049 0.71744149110231 NA NA prediction 0.409625647688521 Functional Gain - ATG16L1 ENSG00000085978 CDS Human protein_coding chr2:234182372 chr2:234182371 stopgain 1.000 0 20 hm7G_associated_SNPs_33354 0 0 1 0 2 ATG16L1 chr2:234182423 5'GT 234182423 Upstream 53bp 30608 chr1 207651401 207651401 1 + C T COAD 207651402 + 207651382 207651422 41 CAATGGAACCCTCCCCTGGCGGTTTGCAGATCCCGTAAGTA CAATGGAACCCTCCCCTGGTGGTTTGCAGATCCCGTAAGTA < 41bp 0.49509432533154 0.704808144086701 NA NA prediction 0.409616288173403 Functional Gain - CR2 ENSG00000117322 CDS Human protein_coding chr1:207651402 chr1:207651401 nonsynonymous SNV 0.421 2 20 hm7G_associated_SNPs_33357 0 0 0 0 1 CR2 chr1:207651415 5'GT 207651415 Upstream 15bp 30609 chr16 1814355 1814355 1 + C T UCEC 1814356 + 1814336 1814376 41 GGAGGCCCAATGAGGACGACGCTGGGAATGGAGTCAAGCCA GGAGGCCCAATGAGGACGATGCTGGGAATGGAGTCAAGCCA < 41bp 0.49330086288184 0.704807423507864 NA NA prediction 0.409614847015729 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1814356 chr16:1814355 synonymous SNV . 0 20 hm7G_associated_SNPs_33358 0 0 1 0 1 MAPK8IP3 chr16:1814302 3'AG 1814302 Downstream 54bp 30610 chr11 45892066 45892066 1 + C T HNSC 45892067 + 45892047 45892087 41 CAGATTTACCAGCAGCTTTCGCGCTACCGGGGACTCTGTAA CAGATTTACCAGCAGCTTTTGCGCTACCGGGGACTCTGTAA < 41bp 0.516310123775109 0.721117160494255 NA NA prediction 0.409614073438293 Functional Gain - CRY2 ENSG00000121671 CDS Human protein_coding chr11:45892067 chr11:45892066 nonsynonymous SNV 0.071 2 20 hm7G_associated_SNPs_33359 0 0 1 0 1 CRY2 chr11:45892083 5'GT 45892083 Upstream 18bp 30611 chr19 50951522 50951522 1 + G A UCEC 50951523 + 50951503 50951543 41 AGGACATCGCGGATCTGACGGTGAAGGCCTCAGAACAAGCT AGGACATCGCGGATCTGACAGTGAAGGCCTCAGAACAAGCT < 41bp 0.50082652936802 0.705631366083793 NA NA prediction 0.409609673431546 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50951523 chr19:50951522 synonymous SNV . 0 20 hm7G_associated_SNPs_33362 0 0 0 0 1 MYBPC2 chr19:50951482 3'AG 50951482 Downstream 41bp 30612 chr5 153765900 153765900 1 + C T PRAD 153765901 + 153765881 153765921 41 TGATGGCCGGTGGACTGTTCGCCGTGGATCGGAAGTGGTTC TGATGGCCGGTGGACTGTTTGCCGTGGATCGGAAGTGGTTC < 41bp 0.505103696195531 0.709904985720495 NA NA prediction 0.409602579049928 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153765901 chr5:153765900 synonymous SNV . 0 20 hm7G_associated_SNPs_33364 0 0 1 0 2 GALNT10 chr5:153765873 3'AG 153765873 Downstream 28bp 30613 chr5 153765900 153765900 1 + C T PRAD 153765901 + 153765881 153765921 41 TGATGGCCGGTGGACTGTTCGCCGTGGATCGGAAGTGGTTC TGATGGCCGGTGGACTGTTTGCCGTGGATCGGAAGTGGTTC < 41bp 0.505103696195531 0.709904985720495 NA NA prediction 0.409602579049928 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153765901 chr5:153765900 synonymous SNV . 0 20 hm7G_associated_SNPs_33364 0 0 1 0 2 GALNT10 chr5:153765990 5'GT 153765990 Upstream 91bp 30614 chr20 43653765 43653765 1 + C T UCEC 43653766 + 43653746 43653786 41 TACCACAGGATGGAGACTACGAGTTTGTAAGTAGTGTTGGA TACCACAGGATGGAGACTATGAGTTTGTAAGTAGTGTTGGA < 41bp 0.511412490086149 0.716213647825175 NA NA prediction 0.409602315478051 Functional Gain - STK4 ENSG00000101109 CDS Human protein_coding chr20:43653766 chr20:43653765 synonymous SNV . 0 20 hm7G_associated_SNPs_33365 0 0 1 0 1 STK4 chr20:43653771 5'GT 43653771 Upstream 7bp 30615 chr14 105356024 105356024 1 + G A UCEC 105356025 + 105356005 105356045 41 CCCCCGGCCCCCGGGACACGGACGACGATGAGGAGGAGCCT CCCCCGGCCCCCGGGACACAGACGACGATGAGGAGGAGCCT < 41bp 0.547781079613837 0.752579605998086 NA NA prediction 0.409597052768499 Functional Gain - CEP170B ENSG00000099814 CDS Human protein_coding chr14:105356025 chr14:105356024 synonymous SNV . 0 20 hm7G_associated_SNPs_33366 0 0 0 0 2 CEP170B chr14:105355957 3'AG 105355957 Downstream 68bp 30616 chr14 105356024 105356024 1 + G A UCEC 105356025 + 105356005 105356045 41 CCCCCGGCCCCCGGGACACGGACGACGATGAGGAGGAGCCT CCCCCGGCCCCCGGGACACAGACGACGATGAGGAGGAGCCT < 41bp 0.547781079613837 0.752579605998086 NA NA prediction 0.409597052768499 Functional Gain - CEP170B ENSG00000099814 CDS Human protein_coding chr14:105356025 chr14:105356024 synonymous SNV . 0 20 hm7G_associated_SNPs_33366 0 0 0 0 2 CEP170B chr14:105356095 5'GT 105356095 Upstream 72bp 30617 chr11 5717732 5717732 1 + G A UCEC 5717733 + 5717713 5717753 41 TCAAGATGAGCCCACAGGAGGGGCAGAAGAGAGATGTCTGT TCAAGATGAGCCCACAGGAAGGGCAGAAGAGAGATGTCTGT < 41bp 0.504267774475444 0.709065948992758 NA NA prediction 0.409596349034628 Functional Gain - TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5717733 chr11:5717732 synonymous SNV . 0 20 hm7G_associated_SNPs_33367 0 0 0 0 1 TRIM22 chr11:5717801 5'GT 5717801 Upstream 70bp 30618 chr19 19654200 19654200 1 + G T LUAD 19654201 + 19654181 19654221 41 GTGCGCTCGGGCACTGCCCGGCTCACTGTACTTGGTGAGTG GTGCGCTCGGGCACTGCCCTGCTCACTGTACTTGGTGAGTG < 41bp 0.353578453101851 0.704796013645937 NA NA prediction 0.409592027291874 Functional Gain - CILP2 ENSG00000160161 CDS Human protein_coding chr19:19654201 chr19:19654200 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_33369 0 0 0 0 1 CILP2 chr19:19654214 5'GT 19654214 Upstream 15bp 30619 chr9 129958847 129958847 1 + C T UCEC 129958848 + 129958828 129958868 41 CGACAGTGTCCTAGAGTCCCGCAGCCCCCGAAGGGGCCTGG CGACAGTGTCCTAGAGTCCTGCAGCCCCCGAAGGGGCCTGG < 41bp 0.550311010289219 0.755106413352366 NA NA prediction 0.409590806126294 Functional Gain - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129958848 chr9:129958847 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33370 0 0 0 0 2 RALGPS1 chr9:129958753 3'AG 129958753 Downstream 95bp 30620 chr9 129958847 129958847 1 + C T UCEC 129958848 + 129958828 129958868 41 CGACAGTGTCCTAGAGTCCCGCAGCCCCCGAAGGGGCCTGG CGACAGTGTCCTAGAGTCCTGCAGCCCCCGAAGGGGCCTGG < 41bp 0.550311010289219 0.755106413352366 NA NA prediction 0.409590806126294 Functional Gain - RALGPS1 ENSG00000136828 CDS Human protein_coding chr9:129958848 chr9:129958847 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33370 0 0 0 0 2 RALGPS1 chr9:129958910 5'GT 129958910 Upstream 64bp 30621 chr19 11113713 11113713 1 + C T UCEC 11113714 + 11113694 11113734 41 CTCTTTTTCAGCCTCTGGACGAGACCAGCCAGATGAGCGAC CTCTTTTTCAGCCTCTGGATGAGACCAGCCAGATGAGCGAC < 41bp 0.50356369702006 0.708356530062457 NA NA prediction 0.409585666084794 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11113714 chr19:11113713 synonymous SNV . 0 20 hm7G_associated_SNPs_33373 1 0 1 0 1 SMARCA4 chr19:11113705 3'AG 11113705 Downstream 9bp 30622 chr9 115923929 115923929 1 + G A UCEC 115923930 + 115923910 115923950 41 GACCATCGCAGAGACAGACGGGGACTCTGCAGGCTCAGATT GACCATCGCAGAGACAGACAGGGACTCTGCAGGCTCAGATT < 41bp 0.56002624344723 0.764817187209484 NA NA prediction 0.409581887524508 Functional Gain - SLC31A2 ENSG00000136867 CDS Human protein_coding chr9:115923930 chr9:115923929 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_33374 0 0 0 0 1 SLC31A2 chr9:115923978 5'GT 115923978 Upstream 50bp 30623 chr16 11114054 11114054 1 + C T COAD 11114055 + 11114035 11114075 41 CATTTTGGCTTCCAGAGATCGAGATGGTGATCATGGAGCGT CATTTTGGCTTCCAGAGATTGAGATGGTGATCATGGAGCGT < 41bp 0.496376401271138 0.704787846852302 NA NA prediction 0.409575693704603 Functional Gain - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11114055 chr16:11114054 synonymous SNV . 0 20 hm7G_associated_SNPs_33376 0 0 1 0 1 CLEC16A chr16:11114050 3'AG 11114050 Downstream 5bp 30624 chr6 158014052 158014052 1 + C T STAD 158014053 + 158014033 158014073 41 CACCAGTTCAGGGGGGTACCGCCCGCCTCCCAGAACCAAAG CACCAGTTCAGGGGGGTACTGCCCGCCTCCCAGAACCAAAG < 41bp 0.542694813215627 0.747481014286043 NA NA prediction 0.409572402140831 Functional Gain - ZDHHC14 ENSG00000175048 CDS Human protein_coding chr6:158014053 chr6:158014052 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33377 0 0 1 0 1 ZDHHC14 chr6:158014020 3'AG 158014020 Downstream 33bp 30625 chr11 1973387 1973387 1 + C T UCEC 1973388 + 1973368 1973408 41 TGGACCTCAGGAATTACCTCGAGGGCATCTATAACGTGCCC TGGACCTCAGGAATTACCTTGAGGGCATCTATAACGTGCCC < 41bp 0.50738575083565 0.712170290348999 NA NA prediction 0.409569079026698 Functional Gain - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973388 chr11:1973387 synonymous SNV . 0 20 hm7G_associated_SNPs_33378 0 0 1 0 2 MRPL23 chr11:1973357 3'AG 1973357 Downstream 31bp 30626 chr11 1973387 1973387 1 + C T UCEC 1973388 + 1973368 1973408 41 TGGACCTCAGGAATTACCTCGAGGGCATCTATAACGTGCCC TGGACCTCAGGAATTACCTTGAGGGCATCTATAACGTGCCC < 41bp 0.50738575083565 0.712170290348999 NA NA prediction 0.409569079026698 Functional Gain - MRPL23 ENSG00000214026 CDS Human protein_coding chr11:1973388 chr11:1973387 synonymous SNV . 0 20 hm7G_associated_SNPs_33378 0 0 1 0 2 MRPL23 chr11:1973439 5'GT 1973439 Upstream 53bp 30627 chr7 100776988 100776988 1 + C T BLCA 100776989 + 100776969 100777009 41 TTCACAGCTGAGTTCACCACGCCCGATGGCCATTACTACGA TTCACAGCTGAGTTCACCATGCCCGATGGCCATTACTACGA < 41bp 0.506944881147908 0.711728657000715 NA NA prediction 0.409567551705615 Functional Gain - SERPINE1 ENSG00000106366 CDS Human protein_coding chr7:100776989 chr7:100776988 nonsynonymous SNV 0.097 5 20 hm7G_associated_SNPs_33379 0 0 1 0 1 SERPINE1 chr7:100776976 3'AG 100776976 Downstream 13bp 30628 chr12 119961582 119961582 1 + G A SKCM 119961583 + 119961563 119961603 41 TTTACAGCGTAGCCCAGGAGGCTGGCTTCTGCCTGCAGGAC TTTACAGCGTAGCCCAGGAAGCTGGCTTCTGCCTGCAGGAC < 41bp 0.505826558234465 0.710610328671362 NA NA prediction 0.409567540873794 Functional Gain - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119961583 chr12:119961582 synonymous SNV . 0 20 hm7G_associated_SNPs_33380 0 0 0 0 2 CCDC60 chr12:119961498 3'AG 119961498 Downstream 85bp 30629 chr12 119961582 119961582 1 + G A SKCM 119961583 + 119961563 119961603 41 TTTACAGCGTAGCCCAGGAGGCTGGCTTCTGCCTGCAGGAC TTTACAGCGTAGCCCAGGAAGCTGGCTTCTGCCTGCAGGAC < 41bp 0.505826558234465 0.710610328671362 NA NA prediction 0.409567540873794 Functional Gain - CCDC60 ENSG00000183273 CDS Human protein_coding chr12:119961583 chr12:119961582 synonymous SNV . 0 20 hm7G_associated_SNPs_33380 0 0 0 0 2 CCDC60 chr12:119961623 5'GT 119961623 Upstream 42bp 30630 chr4 186357480 186357480 1 + C T rs141166090 186357481 + 186357461 186357501 41 AACAGTTTTCACACTCTGCCGACTTCTATGATGCAGCAAAA AACAGTTTTCACACTCTGCTGACTTCTATGATGCAGCAAAA < 41bp 0.49710039144174 0.704780014922353 NA NA prediction 0.409560029844707 Functional Gain - C4orf47 ENSG00000205129 CDS Human protein_coding chr4:186357481 chr4:186357480 synonymous SNV . 0 20 hm7G_associated_SNPs_33382 0 0 0 0 2 C4orf47 chr4:186357438 3'AG 186357438 Downstream 43bp 30631 chr4 186357480 186357480 1 + C T rs141166090 186357481 + 186357461 186357501 41 AACAGTTTTCACACTCTGCCGACTTCTATGATGCAGCAAAA AACAGTTTTCACACTCTGCTGACTTCTATGATGCAGCAAAA < 41bp 0.49710039144174 0.704780014922353 NA NA prediction 0.409560029844707 Functional Gain - C4orf47 ENSG00000205129 CDS Human protein_coding chr4:186357481 chr4:186357480 synonymous SNV . 0 20 hm7G_associated_SNPs_33382 0 0 0 0 2 C4orf47 chr4:186357513 5'GT 186357513 Upstream 34bp 30632 chrX 129173245 129173245 1 + C T UCEC 129173246 + 129173226 129173266 41 CAGCAGCGACACCATGAAGCGCTTTCTCAGTGGTAAGCATG CAGCAGCGACACCATGAAGTGCTTTCTCAGTGGTAAGCATG < 41bp 0.541453026770174 0.746232574067569 NA NA prediction 0.409559094594789 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129173246 chrX:129173245 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33384 0 0 0 0 1 BCORL1 chrX:129173257 5'GT 129173257 Upstream 13bp 30633 chr17 4720306 4720306 1 + C T CESC 4720307 + 4720287 4720327 41 CGTCCATGGCCTACCGGCCCGGGACCTTGCCCGGCACTTCA CGTCCATGGCCTACCGGCCTGGGACCTTGCCCGGCACTTCA < 41bp 0.554600560289007 0.759379729332353 NA NA prediction 0.409558338086693 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4720307 chr17:4720306 nonsynonymous SNV 0.779 4 20 hm7G_associated_SNPs_33385 1 0 0 0 2 PLD2 chr17:4720232 3'AG 4720232 Downstream 75bp 30634 chr17 4720306 4720306 1 + C T CESC 4720307 + 4720287 4720327 41 CGTCCATGGCCTACCGGCCCGGGACCTTGCCCGGCACTTCA CGTCCATGGCCTACCGGCCTGGGACCTTGCCCGGCACTTCA < 41bp 0.554600560289007 0.759379729332353 NA NA prediction 0.409558338086693 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4720307 chr17:4720306 nonsynonymous SNV 0.779 4 20 hm7G_associated_SNPs_33385 1 0 0 0 2 PLD2 chr17:4720350 5'GT 4720350 Upstream 45bp 30635 chr1 65849957 65849957 1 + C T BLCA 65849958 + 65849938 65849978 41 TACTCCTGGCCCAGCCATTCGATTGCTATATGCAAAGCGAC TACTCCTGGCCCAGCCATTTGATTGCTATATGCAAAGCGAC < 41bp 0.547851620724442 0.752628728591444 NA NA prediction 0.409554215734004 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65849958 chr1:65849957 stopgain 0.618 1 20 hm7G_associated_SNPs_33387 0 0 1 0 2 DNAJC6 chr1:65849876 3'AG 65849876 Downstream 82bp 30636 chr1 65849957 65849957 1 + C T BLCA 65849958 + 65849938 65849978 41 TACTCCTGGCCCAGCCATTCGATTGCTATATGCAAAGCGAC TACTCCTGGCCCAGCCATTTGATTGCTATATGCAAAGCGAC < 41bp 0.547851620724442 0.752628728591444 NA NA prediction 0.409554215734004 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65849958 chr1:65849957 stopgain 0.618 1 20 hm7G_associated_SNPs_33387 0 0 1 0 2 DNAJC6 chr1:65850009 5'GT 65850009 Upstream 53bp 30637 chr15 23811206 23811206 1 + G A LUAD 23811207 + 23811187 23811227 41 GTTGCCAAGCCGAAGCAGCGGCATTTGGACAAAGCAGATCA GTTGCCAAGCCGAAGCAGCAGCATTTGGACAAAGCAGATCA < 41bp 0.508069980425453 0.712846289307381 NA NA prediction 0.409552617763857 Functional Gain - MKRN3 ENSG00000179455 CDS Human protein_coding chr15:23811207 chr15:23811206 nonsynonymous SNV 0.072 4 20 hm7G_associated_SNPs_33388 0 0 1 0 1 MKRN3 chr15:23811234 5'GT 23811234 Upstream 29bp 30638 chr16 31374520 31374520 1 + G A SKCM 31374521 + 31374501 31374541 41 TGTGATGCTGTTCTCTACGGGGAGCAGGGCCACCCCTGGGG TGTGATGCTGTTCTCTACGAGGAGCAGGGCCACCCCTGGGG < 41bp 0.477528974892042 0.704775765682898 NA NA prediction 0.409551531365796 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31374521 chr16:31374520 nonsynonymous SNV 0.853 3 20 hm7G_associated_SNPs_33389 0 0 0 0 1 ITGAX chr16:31374486 3'AG 31374486 Downstream 35bp 30639 chr2 135185968 135185968 1 + C T STAD 135185969 + 135185949 135185989 41 TGCCATATGAATTTACGTGCGAGGGGATGCTACAGAGAATC TGCCATATGAATTTACGTGTGAGGGGATGCTACAGAGAATC < 41bp 0.498682132286621 0.704775226375188 NA NA prediction 0.409550452750376 Functional Gain - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135185969 chr2:135185968 synonymous SNV . 0 20 hm7G_associated_SNPs_33390 0 0 1 0 2 MGAT5 chr2:135185936 3'AG 135185936 Downstream 33bp 30640 chr2 135185968 135185968 1 + C T STAD 135185969 + 135185949 135185989 41 TGCCATATGAATTTACGTGCGAGGGGATGCTACAGAGAATC TGCCATATGAATTTACGTGTGAGGGGATGCTACAGAGAATC < 41bp 0.498682132286621 0.704775226375188 NA NA prediction 0.409550452750376 Functional Gain - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135185969 chr2:135185968 synonymous SNV . 0 20 hm7G_associated_SNPs_33390 0 0 1 0 2 MGAT5 chr2:135186010 5'GT 135186010 Upstream 43bp 30641 chr4 100527938 100527938 1 + G T SKCM 100527939 + 100527919 100527959 41 TAAGAAGTTAATCCTGGGAGGACTTGAAAAAGCAGAGAAAA TAAGAAGTTAATCCTGGGATGACTTGAAAAAGCAGAGAAAA < 41bp 0.696037367528853 0.900810859022563 NA NA prediction 0.409546982987419 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100527939 chr4:100527938 stopgain 1.000 1 20 hm7G_associated_SNPs_33391 0 0 1 0 1 MTTP chr4:100527905 3'AG 100527905 Downstream 34bp 30642 chrX 70384090 70384090 1 + C T UCEC 70384091 + 70384071 70384111 41 GCGAGAATATTGCCTTCTTCGGGGGAGACCCCCGCCGGATC GCGAGAATATTGCCTTCTTTGGGGGAGACCCCCGCCGGATC < 41bp 0.538439874127602 0.743213051824792 NA NA prediction 0.40954635539438 Functional Gain - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70384091 chrX:70384090 synonymous SNV . 0 20 hm7G_associated_SNPs_33392 0 0 0 0 1 NLGN3 chrX:70383993 3'AG 70383993 Downstream 98bp 30643 chr19 7623833 7623833 1 + C T UCEC 7623834 + 7623814 7623854 41 CCTACGGGGACAGCCTGTCCGGCTGGTGGCTGCTGTGGAAG CCTACGGGGACAGCCTGTCTGGCTGGTGGCTGCTGTGGAAG < 41bp 0.495399777156408 0.704772687009613 NA NA prediction 0.409545374019225 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7623834 chr19:7623833 synonymous SNV . 0 20 hm7G_associated_SNPs_33393 2 0 1 0 1 PNPLA6 chr19:7623736 3'AG 7623736 Downstream 98bp 30644 chr9 117008172 117008172 1 + G A COAD 117008173 + 117008153 117008193 41 CAGGGGATCCTGGTCGGCCGGGGCCTGTGGGAGAGCAGGTT CAGGGGATCCTGGTCGGCCAGGGCCTGTGGGAGAGCAGGTT < 41bp 0.540669339588914 0.74543091357918 NA NA prediction 0.409523147980531 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117008173 chr9:117008172 synonymous SNV . 0 20 hm7G_associated_SNPs_33399 0 0 1 0 2 COL27A1 chr9:117008146 3'AG 117008146 Downstream 27bp 30645 chr9 117008172 117008172 1 + G A COAD 117008173 + 117008153 117008193 41 CAGGGGATCCTGGTCGGCCGGGGCCTGTGGGAGAGCAGGTT CAGGGGATCCTGGTCGGCCAGGGCCTGTGGGAGAGCAGGTT < 41bp 0.540669339588914 0.74543091357918 NA NA prediction 0.409523147980531 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117008173 chr9:117008172 synonymous SNV . 0 20 hm7G_associated_SNPs_33399 0 0 1 0 2 COL27A1 chr9:117008190 5'GT 117008190 Upstream 19bp 30646 chr18 74592217 74592217 1 + C T LUAD 74592218 + 74592198 74592238 41 GTGGAGTCGGGGCAGTCCCCGCAGCCTGGGCAGCAGCTGAG GTGGAGTCGGGGCAGTCCCTGCAGCCTGGGCAGCAGCTGAG < 41bp 0.543898875643073 0.748658987806784 NA NA prediction 0.409520224327423 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74592218 chr18:74592217 nonsynonymous SNV 0.008 1 20 hm7G_associated_SNPs_33401 0 0 1 0 1 ZNF236 chr18:74592272 5'GT 74592272 Upstream 56bp 30647 chr11 120292527 120292527 1 + G T OV 120292528 + 120292508 120292548 41 ACAGATGGAGCAGCCATGCGGGCTGGAGTACAGACAGGTGA ACAGATGGAGCAGCCATGCTGGCTGGAGTACAGACAGGTGA < 41bp 0.367929704402762 0.704760079740932 NA NA prediction 0.409520159481864 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120292528 chr11:120292527 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33402 0 0 1 0 2 ARHGEF12 chr11:120292512 3'AG 120292512 Downstream 16bp 30648 chr11 120292527 120292527 1 + G T OV 120292528 + 120292508 120292548 41 ACAGATGGAGCAGCCATGCGGGCTGGAGTACAGACAGGTGA ACAGATGGAGCAGCCATGCTGGCTGGAGTACAGACAGGTGA < 41bp 0.367929704402762 0.704760079740932 NA NA prediction 0.409520159481864 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120292528 chr11:120292527 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33402 0 0 1 0 2 ARHGEF12 chr11:120292561 5'GT 120292561 Upstream 35bp 30649 chr1 36023424 36023424 1 + G A rs114784860 36023425 + 36023405 36023445 41 GCAACGCGGCGTGAGCAGCGGCCCGAGGCTCCCGGAGCATC GCAACGCGGCGTGAGCAGCAGCCCGAGGCTCCCGGAGCATC < 41bp 0.553253092908469 0.758009844760862 NA NA prediction 0.409513503704787 Functional Gain - NCDN ENSG00000020129;ENSG00000142687 UTR5 Human other chr1:36023425 chr1:36023424 . . 0 20 hm7G_associated_SNPs_33404 0 0 1 0 1 NCDN chr1:36023484 5'GT 36023484 Upstream 61bp 30650 chr19 19576180 19576180 1 + G A UCEC 19576181 + 19576161 19576201 41 GAAGAAGCATGCCGAACACGGAGTCAGAAACGAGCGCTTGA GAAGAAGCATGCCGAACACAGAGTCAGAAACGAGCGCTTGA < 41bp 0.49615304982676 0.704756584453413 NA NA prediction 0.409513168906825 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19576181 chr19:19576180 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33405 0 0 1 0 1 GATAD2A chr19:19576149 3'AG 19576149 Downstream 32bp 30651 chr21 45522849 45522849 1 + C T LUAD 45522850 + 45522830 45522870 41 CACACTCCTCCCAACTGGACGCTGGTAAGGACTTTGGAAGA CACACTCCTCCCAACTGGATGCTGGTAAGGACTTTGGAAGA < 41bp 0.499529216711101 0.704754592457822 NA NA prediction 0.409509184915644 Functional Gain - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45522850 chr21:45522849 synonymous SNV . 0 20 hm7G_associated_SNPs_33406 0 0 0 0 1 TRAPPC10 chr21:45522853 5'GT 45522853 Upstream 5bp 30652 chr2 71187161 71187161 1 + G A STAD 71187162 + 71187142 71187182 41 CATGAACAGCATTGCCCGCGGCCAGAAGATCCCCATCTTCT CATGAACAGCATTGCCCGCAGCCAGAAGATCCCCATCTTCT < 41bp 0.565145374624137 0.769899643868438 NA NA prediction 0.409508538488602 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187162 chr2:71187161 nonsynonymous SNV 0.143 4 20 hm7G_associated_SNPs_33407 0 0 0 0 2 ATP6V1B1 chr2:71187069 3'AG 71187069 Downstream 93bp 30653 chr2 71187161 71187161 1 + G A STAD 71187162 + 71187142 71187182 41 CATGAACAGCATTGCCCGCGGCCAGAAGATCCCCATCTTCT CATGAACAGCATTGCCCGCAGCCAGAAGATCCCCATCTTCT < 41bp 0.565145374624137 0.769899643868438 NA NA prediction 0.409508538488602 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71187162 chr2:71187161 nonsynonymous SNV 0.143 4 20 hm7G_associated_SNPs_33407 0 0 0 0 2 ATP6V1B1 chr2:71187208 5'GT 71187208 Upstream 48bp 30654 chr15 67482801 67482801 1 + G T UCEC 67482802 + 67482782 67482822 41 ATTGAGCTGCACCTGAATGGGCCTTTGCAGTGGCTTGACAA ATTGAGCTGCACCTGAATGTGCCTTTGCAGTGGCTTGACAA < 41bp 0.37759817414347 0.704752948611027 NA NA prediction 0.409505897222054 Functional Gain - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67482802 chr15:67482801 nonsynonymous SNV 0.956 5 20 hm7G_associated_SNPs_33408 0 0 1 0 1 SMAD3 chr15:67482751 3'AG 67482751 Downstream 51bp 30655 chr15 45555278 45555278 1 + G A rs115562193 45555279 + 45555259 45555299 41 CCTATGCTGCCTATCTCCTGGCAGCTTGCATCTTGAATTTC CCTATGCTGCCTATCTCCTAGCAGCTTGCATCTTGAATTTC < 41bp 0.496225603096039 0.704752812726252 NA NA prediction 0.409505625452503 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45555279 chr15:45555278 synonymous SNV . 0 20 hm7G_associated_SNPs_33410 0 0 0 0 1 SLC28A2 chr15:45555259 3'AG 45555259 Downstream 20bp 30656 chr2 43973034 43973034 1 + G T STAD 43973035 + 43973015 43973055 41 TTATTTCCAAATGGGAACAGGCTTCCAAAGAACAGCAGCCT TTATTTCCAAATGGGAACATGCTTCCAAAGAACAGCAGCCT < 41bp 0.69754448338633 0.902296420869061 NA NA prediction 0.409503874965461 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43973035 chr2:43973034 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33411 0 0 0 0 2 PLEKHH2 chr2:43973005 3'AG 43973005 Downstream 30bp 30657 chr2 43973034 43973034 1 + G T STAD 43973035 + 43973015 43973055 41 TTATTTCCAAATGGGAACAGGCTTCCAAAGAACAGCAGCCT TTATTTCCAAATGGGAACATGCTTCCAAAGAACAGCAGCCT < 41bp 0.69754448338633 0.902296420869061 NA NA prediction 0.409503874965461 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43973035 chr2:43973034 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33411 0 0 0 0 2 PLEKHH2 chr2:43973102 5'GT 43973102 Upstream 69bp 30658 chr16 84228718 84228718 1 + C T rs146515699 84228719 + 84228699 84228739 41 GCTGCGCAGCGTTGGTGAGCGCCGGCTTTGACCTCCTGTTG GCTGCGCAGCGTTGGTGAGTGCCGGCTTTGACCTCCTGTTG < 41bp 0.503507295847449 0.708257968726693 NA NA prediction 0.409501345758487 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228719 chr16:84228718 synonymous SNV . 0 20 hm7G_associated_SNPs_33413 0 0 0 0 2 ADAD2 chr16:84228675 3'AG 84228675 Downstream 44bp 30659 chr16 84228718 84228718 1 + C T rs146515699 84228719 + 84228699 84228739 41 GCTGCGCAGCGTTGGTGAGCGCCGGCTTTGACCTCCTGTTG GCTGCGCAGCGTTGGTGAGTGCCGGCTTTGACCTCCTGTTG < 41bp 0.503507295847449 0.708257968726693 NA NA prediction 0.409501345758487 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228719 chr16:84228718 synonymous SNV . 0 20 hm7G_associated_SNPs_33413 0 0 0 0 2 ADAD2 chr16:84228800 5'GT 84228800 Upstream 83bp 30660 chr10 90491947 90491947 1 + G T LUAD 90491948 + 90491928 90491968 41 TTGATAGTTTGGATGAGATGGCTAAATATGACCTTCCAGCC TTGATAGTTTGGATGAGATTGCTAAATATGACCTTCCAGCC < 41bp 0.689469063621658 0.894219437525815 NA NA prediction 0.409500747808315 Functional Gain - LIPK ENSG00000204021 CDS Human protein_coding chr10:90491948 chr10:90491947 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33414 0 0 0 0 2 LIPK chr10:90491935 3'AG 90491935 Downstream 13bp 30661 chr10 90491947 90491947 1 + G T LUAD 90491948 + 90491928 90491968 41 TTGATAGTTTGGATGAGATGGCTAAATATGACCTTCCAGCC TTGATAGTTTGGATGAGATTGCTAAATATGACCTTCCAGCC < 41bp 0.689469063621658 0.894219437525815 NA NA prediction 0.409500747808315 Functional Gain - LIPK ENSG00000204021 CDS Human protein_coding chr10:90491948 chr10:90491947 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33414 0 0 0 0 2 LIPK chr10:90492044 5'GT 90492044 Upstream 98bp 30662 chr4 48990671 48990671 1 + G T UCEC 48990672 + 48990652 48990692 41 TGGATGCTAACCCTGCTGAGGATAATCACTATTGGTAAGAT TGGATGCTAACCCTGCTGATGATAATCACTATTGGTAAGAT < 41bp 0.382258677276903 0.704748828403045 NA NA prediction 0.40949765680609 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48990672 chr4:48990671 nonsynonymous SNV 0.012 3 20 hm7G_associated_SNPs_33416 0 0 0 0 1 CWH43 chr4:48990685 5'GT 48990685 Upstream 15bp 30663 chr11 17793281 17793281 1 + C T KICH 17793282 + 17793262 17793302 41 CTGCCTGGAGACCCACGAGCGCTTCAACCCCATCGTGAACA CTGCCTGGAGACCCACGAGTGCTTCAACCCCATCGTGAACA < 41bp 0.538429166920959 0.743177476528036 NA NA prediction 0.409496619214154 Functional Gain - KCNC1 ENSG00000129159 CDS Human protein_coding chr11:17793282 chr11:17793281 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_33417 0 0 0 0 1 KCNC1 chr11:17793212 3'AG 17793212 Downstream 70bp 30664 chr11 111856033 111856033 1 + C T rs34966520 111856034 + 111856014 111856054 41 GTGAACCAGGTGTCAATCCCGAGGAACAACTGGTGAGCTCC GTGAACCAGGTGTCAATCCTGAGGAACAACTGGTGAGCTCC < 41bp 0.537236429546693 0.74198417946186 NA NA prediction 0.409495499830334 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111856034 chr11:111856033 synonymous SNV . 0 20 hm7G_associated_SNPs_33418 0 0 1 0 2 DIXDC1 chr11:111855956 3'AG 111855956 Downstream 78bp 30665 chr11 111856033 111856033 1 + C T rs34966520 111856034 + 111856014 111856054 41 GTGAACCAGGTGTCAATCCCGAGGAACAACTGGTGAGCTCC GTGAACCAGGTGTCAATCCTGAGGAACAACTGGTGAGCTCC < 41bp 0.537236429546693 0.74198417946186 NA NA prediction 0.409495499830334 Functional Gain - DIXDC1 ENSG00000150764 CDS Human protein_coding chr11:111856034 chr11:111856033 synonymous SNV . 0 20 hm7G_associated_SNPs_33418 0 0 1 0 2 DIXDC1 chr11:111856045 5'GT 111856045 Upstream 13bp 30666 chr10 105191961 105191961 1 + C T rs79997414 105191962 + 105191942 105191982 41 AGATTAAACAGTACCAGGCCGGCCAGACTGTTACTTGCTTC AGATTAAACAGTACCAGGCTGGCCAGACTGTTACTTGCTTC < 41bp 0.53652162662955 0.741267165841642 NA NA prediction 0.409491078424183 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105191962 chr10:105191961 synonymous SNV . 0 20 hm7G_associated_SNPs_33420 0 0 1 0 2 PDCD11 chr10:105191886 3'AG 105191886 Downstream 76bp 30667 chr10 105191961 105191961 1 + C T rs79997414 105191962 + 105191942 105191982 41 AGATTAAACAGTACCAGGCCGGCCAGACTGTTACTTGCTTC AGATTAAACAGTACCAGGCTGGCCAGACTGTTACTTGCTTC < 41bp 0.53652162662955 0.741267165841642 NA NA prediction 0.409491078424183 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105191962 chr10:105191961 synonymous SNV . 0 20 hm7G_associated_SNPs_33420 0 0 1 0 2 PDCD11 chr10:105191991 5'GT 105191991 Upstream 31bp 30668 chr1 27609861 27609861 1 + C T UCEC 27609862 + 27609842 27609882 41 GGTTCCGATGACCAGCACACGATTGTGTGGGACCCGCTGCA GGTTCCGATGACCAGCACATGATTGTGTGGGACCCGCTGCA < 41bp 0.544587237353955 0.749331192071794 NA NA prediction 0.409487909435678 Functional Gain - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27609862 chr1:27609861 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_33421 0 0 0 1 2 WDTC1 chr1:27609829 3'AG 27609829 Downstream 33bp 30669 chr1 27609861 27609861 1 + C T UCEC 27609862 + 27609842 27609882 41 GGTTCCGATGACCAGCACACGATTGTGTGGGACCCGCTGCA GGTTCCGATGACCAGCACATGATTGTGTGGGACCCGCTGCA < 41bp 0.544587237353955 0.749331192071794 NA NA prediction 0.409487909435678 Functional Gain - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27609862 chr1:27609861 nonsynonymous SNV 0.983 1 20 hm7G_associated_SNPs_33421 0 0 0 1 2 WDTC1 chr1:27609940 5'GT 27609940 Upstream 80bp 30670 chr12 125576018 125576018 1 + G A GBM 125576019 + 125575999 125576039 41 TCGAGGCGATGCTGGCTGCGGCAAGCATTGGTGCCATCTGG TCGAGGCGATGCTGGCTGCAGCAAGCATTGGTGCCATCTGG < 41bp 0.556185322695596 0.76092810042886 NA NA prediction 0.409485555466528 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125576019 chr12:125576018 synonymous SNV . 0 20 hm7G_associated_SNPs_33422 0 0 1 2 2 AACS chr12:125575972 3'AG 125575972 Downstream 47bp 30671 chr12 125576018 125576018 1 + G A GBM 125576019 + 125575999 125576039 41 TCGAGGCGATGCTGGCTGCGGCAAGCATTGGTGCCATCTGG TCGAGGCGATGCTGGCTGCAGCAAGCATTGGTGCCATCTGG < 41bp 0.556185322695596 0.76092810042886 NA NA prediction 0.409485555466528 Functional Gain - AACS ENSG00000081760 CDS Human protein_coding chr12:125576019 chr12:125576018 synonymous SNV . 0 20 hm7G_associated_SNPs_33422 0 0 1 2 2 AACS chr12:125576069 5'GT 125576069 Upstream 52bp 30672 chr2 135883791 135883791 1 + G T UCEC 135883792 + 135883772 135883812 41 ATGGCCTCATCTGACCGAAGGGATCATTGTGGATAATGATG ATGGCCTCATCTGACCGAATGGATCATTGTGGATAATGATG < 41bp 0.361670662575091 0.704741705564878 NA NA prediction 0.409483411129756 Functional Gain - RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883792 chr2:135883791 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_33423 0 0 1 0 2 RAB3GAP1 chr2:135883751 3'AG 135883751 Downstream 41bp 30673 chr2 135883791 135883791 1 + G T UCEC 135883792 + 135883772 135883812 41 ATGGCCTCATCTGACCGAAGGGATCATTGTGGATAATGATG ATGGCCTCATCTGACCGAATGGATCATTGTGGATAATGATG < 41bp 0.361670662575091 0.704741705564878 NA NA prediction 0.409483411129756 Functional Gain - RAB3GAP1 ENSG00000115839 CDS Human protein_coding chr2:135883792 chr2:135883791 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_33423 0 0 1 0 2 RAB3GAP1 chr2:135883819 5'GT 135883819 Upstream 29bp 30674 chr1 175086300 175086300 1 + G A SKCM 175086301 + 175086281 175086321 41 CACGTGTGGGCCCAGAAGGGGGCCCAGGAGAGCAAGAAGGC CACGTGTGGGCCCAGAAGGAGGCCCAGGAGAGCAAGAAGGC < 41bp 0.542058120359146 0.746799393045654 NA NA prediction 0.409482545373016 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175086301 chr1:175086300 nonsynonymous SNV 0.779 2 20 hm7G_associated_SNPs_33424 0 0 0 0 1 TNN chr1:175086341 5'GT 175086341 Upstream 42bp 30675 chr2 113955458 113955458 1 + G A SKCM 113955459 + 113955439 113955479 41 ACGTCTTCCAGCTGCGCACGGCTGACTGGCGCCTCTACCTC ACGTCTTCCAGCTGCGCACAGCTGACTGGCGCCTCTACCTC < 41bp 0.57546567145382 0.780204908810665 NA NA prediction 0.40947847471369 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113955459 chr2:113955458 synonymous SNV . 0 20 hm7G_associated_SNPs_33425 0 0 0 0 1 PSD4 chr2:113955490 5'GT 113955490 Upstream 33bp 30676 chr6 13601128 13601128 1 + C T STAD 13601129 + 13601109 13601149 41 CCCAGGTGGCTGCCAGGGGCGTGCCAGTGGCTGAATTTAAC CCCAGGTGGCTGCCAGGGGTGTGCCAGTGGCTGAATTTAAC < 41bp 0.50789936452197 0.712638517289686 NA NA prediction 0.409478305535431 Functional Gain - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13601129 chr6:13601128 synonymous SNV . 0 20 hm7G_associated_SNPs_33426 0 0 1 0 2 SIRT5 chr6:13601066 3'AG 13601066 Downstream 63bp 30677 chr6 13601128 13601128 1 + C T STAD 13601129 + 13601109 13601149 41 CCCAGGTGGCTGCCAGGGGCGTGCCAGTGGCTGAATTTAAC CCCAGGTGGCTGCCAGGGGTGTGCCAGTGGCTGAATTTAAC < 41bp 0.50789936452197 0.712638517289686 NA NA prediction 0.409478305535431 Functional Gain - SIRT5 ENSG00000124523 CDS Human protein_coding chr6:13601129 chr6:13601128 synonymous SNV . 0 20 hm7G_associated_SNPs_33426 0 0 1 0 2 SIRT5 chr6:13601181 5'GT 13601181 Upstream 54bp 30678 chr12 6965284 6965284 1 + G T LUAD 6965285 + 6965265 6965305 41 AGATTGCCCGGGATGGACTGGGGGGACTGCCTGACATTGTC AGATTGCCCGGGATGGACTTGGGGGACTGCCTGACATTGTC < 41bp 0.349859277743624 0.704738618383741 NA NA prediction 0.409477236767482 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6965285 chr12:6965284 synonymous SNV . 0 20 hm7G_associated_SNPs_33428 0 0 1 0 1 USP5 chr12:6965314 5'GT 6965314 Upstream 31bp 30679 chr15 42695111 42695111 1 + C T LUAD 42695112 + 42695092 42695132 41 GCTTCCGCCTGCCTCCCAGCGAGTACGTCATCGTGCCCTCC GCTTCCGCCTGCCTCCCAGTGAGTACGTCATCGTGCCCTCC < 41bp 0.506829267150829 0.711567138802373 NA NA prediction 0.409475743303089 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42695112 chr15:42695111 synonymous SNV . 0 20 hm7G_associated_SNPs_33429 1 0 0 0 1 CAPN3 chr15:42695200 5'GT 42695200 Upstream 90bp 30680 chr3 49742520 49742520 1 + C T UCEC 49742521 + 49742501 49742541 41 AACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCCC AACCGCTTCCTCAGCACAGTGGCTGTGAGCCTCATGACCCC < 41bp 0.508876772467313 0.713611918659295 NA NA prediction 0.409470292383964 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742521 chr3:49742520 nonsynonymous SNV 0.789 4 20 hm7G_associated_SNPs_33432 0 0 1 0 2 RNF123 chr3:49742615 5'GT 49742615 Upstream 96bp 30681 chr3 49742520 49742520 1 + C T UCEC 49742521 + 49742501 49742541 41 AACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCCC AACCGCTTCCTCAGCACAGTGGCTGTGAGCCTCATGACCCC < 41bp 0.508876772467313 0.713611918659295 NA NA prediction 0.409470292383964 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49742521 chr3:49742520 nonsynonymous SNV 0.789 4 20 hm7G_associated_SNPs_33432 0 0 1 0 2 RNF123 chr3:49742619 5'GT 49742619 Upstream 100bp 30682 chr19 16976445 16976445 1 + C T COAD 16976446 + 16976426 16976466 41 ACCCTGTCACCGCTGTCCCCGTTGTCCTGAAAAGGTGCCCT ACCCTGTCACCGCTGTCCCTGTTGTCCTGAAAAGGTGCCCT < 41bp 0.49839290760197 0.704733501034748 NA NA prediction 0.409467002069496 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16976446 chr19:16976445 synonymous SNV . 0 20 hm7G_associated_SNPs_33433 0 0 1 0 1 SIN3B chr19:16976459 5'GT 16976459 Upstream 15bp 30683 chr3 15055156 15055156 1 + G T DLBC 15055157 + 15055137 15055177 41 CACCGCAGTGGACGCCTCCGGATCCCCCAAACAGCAGTTCA CACCGCAGTGGACGCCTCCTGATCCCCCAAACAGCAGTTCA < 41bp 0.37187296089488 0.70473345162156 NA NA prediction 0.409466903243121 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15055157 chr3:15055156 stopgain 0.990 0 20 hm7G_associated_SNPs_33434 0 0 1 0 1 NR2C2 chr3:15055096 3'AG 15055096 Downstream 61bp 30684 chr10 70738679 70738679 1 + G T LIHC 70738680 + 70738660 70738700 41 AGAACTTAAAGAGCAGCTGGGCGAGGAGATTGATTCCAAAG AGAACTTAAAGAGCAGCTGTGCGAGGAGATTGATTCCAAAG < 41bp 0.699161813600128 0.903892624525426 NA NA prediction 0.409461621850596 Functional Gain - DDX21 ENSG00000165732 CDS Human protein_coding chr10:70738680 chr10:70738679 nonsynonymous SNV 0.875 3 20 hm7G_associated_SNPs_33435 0 0 1 0 1 DDX21 chr10:70738732 5'GT 70738732 Upstream 54bp 30685 chr14 78353526 78353526 1 + G A STAD 78353527 + 78353507 78353547 41 TGCTGCATGATGGGCGGACGGTGGCCGTGAAGGTCCAGCAC TGCTGCATGATGGGCGGACAGTGGCCGTGAAGGTCCAGCAC < 41bp 0.521736985374394 0.726467405363438 NA NA prediction 0.409460839978088 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78353527 chr14:78353526 synonymous SNV . 0 20 hm7G_associated_SNPs_33437 0 0 0 0 2 ADCK1 chr14:78353434 3'AG 78353434 Downstream 93bp 30686 chr14 78353526 78353526 1 + G A STAD 78353527 + 78353507 78353547 41 TGCTGCATGATGGGCGGACGGTGGCCGTGAAGGTCCAGCAC TGCTGCATGATGGGCGGACAGTGGCCGTGAAGGTCCAGCAC < 41bp 0.521736985374394 0.726467405363438 NA NA prediction 0.409460839978088 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78353527 chr14:78353526 synonymous SNV . 0 20 hm7G_associated_SNPs_33437 0 0 0 0 2 ADCK1 chr14:78353592 5'GT 78353592 Upstream 67bp 30687 chr22 39770548 39770548 1 + C T PAAD 39770549 + 39770529 39770569 41 AAGCCGTCCTGTCCGACATCGGTGTCTCGGGTGAGCCCCAC AAGCCGTCCTGTCCGACATTGGTGTCTCGGGTGAGCCCCAC < 41bp 0.528324175333627 0.733054040258563 NA NA prediction 0.409459729849872 Functional Gain - SYNGR1 ENSG00000100321 CDS Human protein_coding chr22:39770549 chr22:39770548 synonymous SNV . 0 20 hm7G_associated_SNPs_33438 0 0 1 0 1 SYNGR1 chr22:39770558 5'GT 39770558 Upstream 11bp 30688 chr11 61544842 61544842 1 + G A UCEC 61544843 + 61544823 61544863 41 GTGGGCATCAACACAGACCGGCCGGATGAGGCGCTGGTTGT GTGGGCATCAACACAGACCAGCCGGATGAGGCGCTGGTTGT < 41bp 0.563886534591449 0.768614532367065 NA NA prediction 0.409455995551232 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61544843 chr11:61544842 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_33440 0 0 0 0 1 MYRF chr11:61544936 5'GT 61544936 Upstream 95bp 30689 chrX 48923077 48923077 1 + C T GBM 48923078 + 48923058 48923098 41 ATCTGGGGGGAGCCCTGAGCGGCGAACCCCATGGAAACCAC ATCTGGGGGGAGCCCTGAGTGGCGAACCCCATGGAAACCAC < 41bp 0.550314411575243 0.755041754981516 NA NA prediction 0.409454686812546 Functional Gain - CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48923078 chrX:48923077 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_33441 0 0 0 0 2 CCDC120 chrX:48922985 3'AG 48922985 Downstream 93bp 30690 chrX 48923077 48923077 1 + C T GBM 48923078 + 48923058 48923098 41 ATCTGGGGGGAGCCCTGAGCGGCGAACCCCATGGAAACCAC ATCTGGGGGGAGCCCTGAGTGGCGAACCCCATGGAAACCAC < 41bp 0.550314411575243 0.755041754981516 NA NA prediction 0.409454686812546 Functional Gain - CCDC120 ENSG00000147144 CDS Human protein_coding chrX:48923078 chrX:48923077 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_33441 0 0 0 0 2 CCDC120 chrX:48923159 5'GT 48923159 Upstream 83bp 30691 chr10 26513561 26513561 1 + C T rs55789936 26513562 + 26513542 26513582 41 GCTGGCCAGGGGGCTCTGGCGATGGGATATTTTCTCCCGGT GCTGGCCAGGGGGCTCTGGTGATGGGATATTTTCTCCCGGT < 41bp 0.520502487399493 0.725224237162228 NA NA prediction 0.40944349952547 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26513562 chr10:26513561 synonymous SNV . 0 20 hm7G_associated_SNPs_33445 0 0 0 0 2 GAD2 chr10:26513468 3'AG 26513468 Downstream 94bp 30692 chr10 26513561 26513561 1 + C T rs55789936 26513562 + 26513542 26513582 41 GCTGGCCAGGGGGCTCTGGCGATGGGATATTTTCTCCCGGT GCTGGCCAGGGGGCTCTGGTGATGGGATATTTTCTCCCGGT < 41bp 0.520502487399493 0.725224237162228 NA NA prediction 0.40944349952547 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26513562 chr10:26513561 synonymous SNV . 0 20 hm7G_associated_SNPs_33445 0 0 0 0 2 GAD2 chr10:26513580 5'GT 26513580 Upstream 20bp 30693 chr1 50659551 50659551 1 + C T KICH 50659552 + 50659532 50659572 41 ACTTTTCTCGCAATACGGCCGTATCATCACCTCACGAATCC ACTTTTCTCGCAATACGGCTGTATCATCACCTCACGAATCC < 41bp 0.496385844723231 0.704720886020193 NA NA prediction 0.409441772040386 Functional Gain - ELAVL4 ENSG00000162374 CDS Human protein_coding chr1:50659552 chr1:50659551 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_33447 0 0 0 0 1 ELAVL4 chr1:50659590 5'GT 50659590 Upstream 40bp 30694 chr22 19707904 19707904 1 + G A KICH 19707905 + 19707885 19707925 41 GTACTTCCGTGATGAGAGCGGCCTCAACCGAAAGAACATCC GTACTTCCGTGATGAGAGCAGCCTCAACCGAAAGAACATCC < 41bp 0.527939625168765 0.732659329960167 NA NA prediction 0.409439409582806 Functional Gain - SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707905 chr22:19707904 nonsynonymous SNV 0.758 4 20 hm7G_associated_SNPs_33449 0 0 1 0 2 SEPT5 chr22:19707843 3'AG 19707843 Downstream 62bp 30695 chr22 19707904 19707904 1 + G A KICH 19707905 + 19707885 19707925 41 GTACTTCCGTGATGAGAGCGGCCTCAACCGAAAGAACATCC GTACTTCCGTGATGAGAGCAGCCTCAACCGAAAGAACATCC < 41bp 0.527939625168765 0.732659329960167 NA NA prediction 0.409439409582806 Functional Gain - SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19707905 chr22:19707904 nonsynonymous SNV 0.758 4 20 hm7G_associated_SNPs_33449 0 0 1 0 2 SEPT5 chr22:19707977 5'GT 19707977 Upstream 74bp 30696 chr14 103342015 103342015 1 + C T UCEC 103342016 + 103341996 103342036 41 GGCTCTTCAGATCTATTGTCGGAATGAAAGCAGAGGTTGTG GGCTCTTCAGATCTATTGTTGGAATGAAAGCAGAGGTTGTG < 41bp 0.554390337942307 0.759107796220162 NA NA prediction 0.409434916555711 Functional Gain - TRAF3 ENSG00000131323 CDS Human protein_coding chr14:103342016 chr14:103342015 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_33452 1 0 1 0 2 TRAF3 chr14:103341961 3'AG 103341961 Downstream 55bp 30697 chr14 103342015 103342015 1 + C T UCEC 103342016 + 103341996 103342036 41 GGCTCTTCAGATCTATTGTCGGAATGAAAGCAGAGGTTGTG GGCTCTTCAGATCTATTGTTGGAATGAAAGCAGAGGTTGTG < 41bp 0.554390337942307 0.759107796220162 NA NA prediction 0.409434916555711 Functional Gain - TRAF3 ENSG00000131323 CDS Human protein_coding chr14:103342016 chr14:103342015 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_33452 1 0 1 0 2 TRAF3 chr14:103342065 5'GT 103342065 Upstream 51bp 30698 chr1 161696782 161696782 1 + G A rs11585450 161696783 + 161696763 161696803 41 GGCTGCAGCTCCCGGGGCCGGGTGAGTGCCTGCACACCCTC GGCTGCAGCTCCCGGGGCCAGGTGAGTGCCTGCACACCCTC < 41bp 0.569809782194836 0.774526880956097 NA NA prediction 0.409434197522521 Functional Gain - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161696783 chr1:161696782 nonsynonymous SNV 0.530 1 20 hm7G_associated_SNPs_33454 0 0 0 0 1 FCRLB chr1:161696783 5'GT 161696783 Upstream 2bp 30699 chr2 29356592 29356592 1 + C T COAD 29356593 + 29356573 29356613 41 AGACATTAGTTTGCGGAGTCGCTGGACAAACATGAATGCTT AGACATTAGTTTGCGGAGTTGCTGGACAAACATGAATGCTT < 41bp 0.49477225186409 0.704716477375509 NA NA prediction 0.409432954751019 Functional Gain - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29356593 chr2:29356592 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33456 0 0 0 0 1 CLIP4 chr2:29356521 3'AG 29356521 Downstream 72bp 30700 chr22 50589298 50589298 1 + C T UCEC 50589299 + 50589279 50589319 41 AGAGGGACGAAAATGCTTTCGGTGCTTGTGGCGCACATAAT AGAGGGACGAAAATGCTTTTGGTGCTTGTGGCGCACATAAT < 41bp 0.554979400032582 0.759688558987697 NA NA prediction 0.409418317910229 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50589299 chr22:50589298 synonymous SNV . 0 20 hm7G_associated_SNPs_33459 0 0 0 0 1 MOV10L1 chr22:50589328 5'GT 50589328 Upstream 31bp 30701 chr9 33338558 33338558 1 + C T COAD 33338559 + 33338539 33338579 41 CAAGAAACGGTTGTGTGGACGGCATAAATGTAATGAGATAT CAAGAAACGGTTGTGTGGATGGCATAAATGTAATGAGATAT < 41bp 0.540838669231767 0.745547005095426 NA NA prediction 0.409416671727316 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33338559 chr9:33338558 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33460 0 0 1 0 3 NFX1 chr9:33338505 3'AG 33338505 Downstream 54bp 30702 chr9 33338558 33338558 1 + C T COAD 33338559 + 33338539 33338579 41 CAAGAAACGGTTGTGTGGACGGCATAAATGTAATGAGATAT CAAGAAACGGTTGTGTGGATGGCATAAATGTAATGAGATAT < 41bp 0.540838669231767 0.745547005095426 NA NA prediction 0.409416671727316 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33338559 chr9:33338558 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33460 0 0 1 0 3 NFX1 chr9:33338508 3'AG 33338508 Downstream 51bp 30703 chr9 33338558 33338558 1 + C T COAD 33338559 + 33338539 33338579 41 CAAGAAACGGTTGTGTGGACGGCATAAATGTAATGAGATAT CAAGAAACGGTTGTGTGGATGGCATAAATGTAATGAGATAT < 41bp 0.540838669231767 0.745547005095426 NA NA prediction 0.409416671727316 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33338559 chr9:33338558 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33460 0 0 1 0 3 NFX1 chr9:33338587 5'GT 33338587 Upstream 30bp 30704 chr18 19076468 19076468 1 + C T COAD 19076469 + 19076449 19076489 41 TCAAGCTATTTAACTCGCACGGCCTTGGAGCAGGAGGTGGG TCAAGCTATTTAACTCGCATGGCCTTGGAGCAGGAGGTGGG < 41bp 0.537522306329146 0.742230446892565 NA NA prediction 0.409416281126838 Functional Gain - GREB1L ENSG00000141449 CDS Human protein_coding chr18:19076469 chr18:19076468 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33461 0 0 0 0 1 GREB1L chr18:19076415 3'AG 19076415 Downstream 54bp 30705 chr17 43174504 43174504 1 + G A STAD 43174505 + 43174485 43174525 41 CTCTTTTCCAGGGCTCTCCGGCCACCCGGCTGGCTCCCCCA CTCTTTTCCAGGGCTCTCCAGCCACCCGGCTGGCTCCCCCA < 41bp 0.590624236599602 0.795332192069089 NA NA prediction 0.409415910938973 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43174505 chr17:43174504 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33462 0 0 1 0 1 NMT1 chr17:43174496 3'AG 43174496 Downstream 9bp 30706 chr20 60772997 60772997 1 + C T COAD 60772998 + 60772978 60773018 41 GAGTAAAAACTGCTTCGGGCGCAGTGGCGCCGTCCTCTACA GAGTAAAAACTGCTTCGGGTGCAGTGGCGCCGTCCTCTACA < 41bp 0.536804533695714 0.741512220994039 NA NA prediction 0.40941537459665 Functional Gain - MTG2 ENSG00000101181 CDS Human protein_coding chr20:60772998 chr20:60772997 nonsynonymous SNV 0.009 3 20 hm7G_associated_SNPs_33463 0 0 1 0 2 MTG2 chr20:60772908 3'AG 60772908 Downstream 90bp 30707 chr20 60772997 60772997 1 + C T COAD 60772998 + 60772978 60773018 41 GAGTAAAAACTGCTTCGGGCGCAGTGGCGCCGTCCTCTACA GAGTAAAAACTGCTTCGGGTGCAGTGGCGCCGTCCTCTACA < 41bp 0.536804533695714 0.741512220994039 NA NA prediction 0.40941537459665 Functional Gain - MTG2 ENSG00000101181 CDS Human protein_coding chr20:60772998 chr20:60772997 nonsynonymous SNV 0.009 3 20 hm7G_associated_SNPs_33463 0 0 1 0 2 MTG2 chr20:60773023 5'GT 60773023 Upstream 27bp 30708 chr3 9782578 9782578 1 + C T UCEC 9782579 + 9782559 9782599 41 TGGGGTCCCATTGCTACGTCGCCTGCAGACACACCTGCAAT TGGGGTCCCATTGCTACGTTGCCTGCAGACACACCTGCAAT < 41bp 0.538810760974185 0.743516324184132 NA NA prediction 0.409411126419895 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9782579 chr3:9782578 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_33465 0 0 0 0 1 BRPF1 chr3:9782625 5'GT 9782625 Upstream 48bp 30709 chr1 27674027 27674027 1 + C T UCEC 27674028 + 27674008 27674048 41 CTTCGGCTCTGACCTTGTCCGAGCGTCTATGCGCAGGAAGA CTTCGGCTCTGACCTTGTCTGAGCGTCTATGCGCAGGAAGA < 41bp 0.531686520850395 0.736390652059119 NA NA prediction 0.409408262417448 Functional Gain - SYTL1 ENSG00000142765 CDS Human protein_coding chr1:27674028 chr1:27674027 stopgain 0.957 0 20 hm7G_associated_SNPs_33469 0 0 1 0 1 SYTL1 chr1:27674060 5'GT 27674060 Upstream 34bp 30710 chr2 101587467 101587467 1 + G A SKCM 101587468 + 101587448 101587488 41 ACAGTTACGCAGATGTCCGGGTGGAAAGGAGGCAGGAGCTG ACAGTTACGCAGATGTCCGAGTGGAAAGGAGGCAGGAGCTG < 41bp 0.51087871662715 0.715581285304714 NA NA prediction 0.409405137355128 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101587468 chr2:101587467 synonymous SNV . 0 20 hm7G_associated_SNPs_33470 0 0 1 0 2 NPAS2 chr2:101587452 3'AG 101587452 Downstream 16bp 30711 chr2 101587467 101587467 1 + G A SKCM 101587468 + 101587448 101587488 41 ACAGTTACGCAGATGTCCGGGTGGAAAGGAGGCAGGAGCTG ACAGTTACGCAGATGTCCGAGTGGAAAGGAGGCAGGAGCTG < 41bp 0.51087871662715 0.715581285304714 NA NA prediction 0.409405137355128 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101587468 chr2:101587467 synonymous SNV . 0 20 hm7G_associated_SNPs_33470 0 0 1 0 2 NPAS2 chr2:101587536 5'GT 101587536 Upstream 70bp 30712 chr10 75675091 75675091 1 + C T UCEC 75675092 + 75675072 75675112 41 GTCAGCAGCCCCACTACTACGGCTCTGAAGTCACCACCAAA GTCAGCAGCCCCACTACTATGGCTCTGAAGTCACCACCAAA < 41bp 0.531702932777862 0.73640460344779 NA NA prediction 0.409403341339857 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75675092 chr10:75675091 synonymous SNV . 0 20 hm7G_associated_SNPs_33471 1 0 0 0 2 PLAU chr10:75675009 3'AG 75675009 Downstream 83bp 30713 chr10 75675091 75675091 1 + C T UCEC 75675092 + 75675072 75675112 41 GTCAGCAGCCCCACTACTACGGCTCTGAAGTCACCACCAAA GTCAGCAGCCCCACTACTATGGCTCTGAAGTCACCACCAAA < 41bp 0.531702932777862 0.73640460344779 NA NA prediction 0.409403341339857 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75675092 chr10:75675091 synonymous SNV . 0 20 hm7G_associated_SNPs_33471 1 0 0 0 2 PLAU chr10:75675157 5'GT 75675157 Upstream 67bp 30714 chr12 56420729 56420729 1 + G A STAD 56420730 + 56420710 56420750 41 AGAGCCTCACTCCCCTGGGGGCATCCGGCTGCCCAATGGCA AGAGCCTCACTCCCCTGGGAGCATCCGGCTGCCCAATGGCA < 41bp 0.480416895995375 0.704698568184661 NA NA prediction 0.409397136369321 Functional Gain - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56420730 chr12:56420729 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_33474 0 0 1 0 1 IKZF4 chr12:56420825 5'GT 56420825 Upstream 97bp 30715 chr20 36964033 36964033 1 + C T rs141071658 36964034 + 36964014 36964054 41 GGCTTCCCTCTCCCGACGCCGGCCAGAGTCCAGCTCTACAA GGCTTCCCTCTCCCGACGCTGGCCAGAGTCCAGCTCTACAA < 41bp 0.515820307372244 0.720518492075734 NA NA prediction 0.40939636940698 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36964034 chr20:36964033 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_33475 0 0 0 0 2 BPI chr20:36964000 3'AG 36964000 Downstream 34bp 30716 chr20 36964033 36964033 1 + C T rs141071658 36964034 + 36964014 36964054 41 GGCTTCCCTCTCCCGACGCCGGCCAGAGTCCAGCTCTACAA GGCTTCCCTCTCCCGACGCTGGCCAGAGTCCAGCTCTACAA < 41bp 0.515820307372244 0.720518492075734 NA NA prediction 0.40939636940698 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36964034 chr20:36964033 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_33475 0 0 0 0 2 BPI chr20:36964076 5'GT 36964076 Upstream 44bp 30717 chr2 242148972 242148972 1 + G A LUAD 242148973 + 242148953 242148993 41 CAGCCCCGAACCCCATCACGGGTGAGGACGAGCCCTACTTC CAGCCCCGAACCCCATCACAGGTGAGGACGAGCCCTACTTC < 41bp 0.581853739653512 0.78655008730835 NA NA prediction 0.409392695309677 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242148973 chr2:242148972 synonymous SNV . 0 20 hm7G_associated_SNPs_33476 0 0 0 0 2 ANO7 chr2:242148913 3'AG 242148913 Downstream 60bp 30718 chr2 242148972 242148972 1 + G A LUAD 242148973 + 242148953 242148993 41 CAGCCCCGAACCCCATCACGGGTGAGGACGAGCCCTACTTC CAGCCCCGAACCCCATCACAGGTGAGGACGAGCCCTACTTC < 41bp 0.581853739653512 0.78655008730835 NA NA prediction 0.409392695309677 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242148973 chr2:242148972 synonymous SNV . 0 20 hm7G_associated_SNPs_33476 0 0 0 0 2 ANO7 chr2:242149050 5'GT 242149050 Upstream 79bp 30719 chr1 156351238 156351238 1 + G A SKCM 156351239 + 156351219 156351259 41 TCAACACATACTACTCCCTGGCTGCCAGCACCCTTGGCACC TCAACACATACTACTCCCTAGCTGCCAGCACCCTTGGCACC < 41bp 0.581933879430538 0.786625210901441 NA NA prediction 0.409382662941806 Functional Gain - RHBG ENSG00000132677 CDS Human protein_coding chr1:156351239 chr1:156351238 synonymous SNV . 0 20 hm7G_associated_SNPs_33479 0 0 0 0 1 RHBG chr1:156351304 5'GT 156351304 Upstream 67bp 30720 chr7 141726950 141726950 1 + C T SKCM 141726951 + 141726931 141726971 41 TGCGCCAGCCATCACTTACCGCACCATTGGGGGCATTCTCG TGCGCCAGCCATCACTTACTGCACCATTGGGGGCATTCTCG < 41bp 0.51330434580306 0.717995608958051 NA NA prediction 0.409382526309982 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141726951 chr7:141726950 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_33480 0 0 0 0 2 MGAM chr7:141726915 3'AG 141726915 Downstream 36bp 30721 chr7 141726950 141726950 1 + C T SKCM 141726951 + 141726931 141726971 41 TGCGCCAGCCATCACTTACCGCACCATTGGGGGCATTCTCG TGCGCCAGCCATCACTTACTGCACCATTGGGGGCATTCTCG < 41bp 0.51330434580306 0.717995608958051 NA NA prediction 0.409382526309982 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141726951 chr7:141726950 nonsynonymous SNV 0.897 4 20 hm7G_associated_SNPs_33480 0 0 0 0 2 MGAM chr7:141727027 5'GT 141727027 Upstream 78bp 30722 chr22 23603582 23603582 1 + C T CESC 23603583 + 23603563 23603603 41 GCTGCCACCACCTCTCAGCCGGTGCTGACGAGTCAGCAGAT GCTGCCACCACCTCTCAGCTGGTGCTGACGAGTCAGCAGAT < 41bp 0.542245667254729 0.746935193400075 NA NA prediction 0.409379052290693 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23603583 chr22:23603582 nonsynonymous SNV 0.922 4 20 hm7G_associated_SNPs_33482 0 0 1 0 1 BCR chr22:23603542 3'AG 23603542 Downstream 41bp 30723 chr1 206325413 206325413 1 + C T UCEC 206325414 + 206325394 206325434 41 CAGAACCTGGTGGACTTGCCGATGTTTTCTGTCTACATGAG CAGAACCTGGTGGACTTGCTGATGTTTTCTGTCTACATGAG < 41bp 0.49775751276941 0.704688347745483 NA NA prediction 0.409376695490965 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206325414 chr1:206325413 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33483 0 0 0 0 1 CTSE chr1:206325437 5'GT 206325437 Upstream 25bp 30724 chrX 21990688 21990688 1 + C T CESC 21990689 + 21990669 21990709 41 CAGTACTGGGCGGGTGAAACGGTAAGTCCACTCTTGAATGT CAGTACTGGGCGGGTGAAATGGTAAGTCCACTCTTGAATGT < 41bp 0.517689911480205 0.722376637768692 NA NA prediction 0.409373452576974 Functional Gain - SMS ENSG00000102172 CDS Human protein_coding chrX:21990689 chrX:21990688 stopgain 0.982 1 20 hm7G_associated_SNPs_33484 0 0 1 0 2 SMS chrX:21990625 3'AG 21990625 Downstream 64bp 30725 chrX 21990688 21990688 1 + C T CESC 21990689 + 21990669 21990709 41 CAGTACTGGGCGGGTGAAACGGTAAGTCCACTCTTGAATGT CAGTACTGGGCGGGTGAAATGGTAAGTCCACTCTTGAATGT < 41bp 0.517689911480205 0.722376637768692 NA NA prediction 0.409373452576974 Functional Gain - SMS ENSG00000102172 CDS Human protein_coding chrX:21990689 chrX:21990688 stopgain 0.982 1 20 hm7G_associated_SNPs_33484 0 0 1 0 2 SMS chrX:21990689 5'GT 21990689 Upstream 2bp 30726 chrX 150345326 150345326 1 + G A CESC 150345327 + 150345307 150345347 41 CATCGTTGTAGACCTAATCGGCAACTCCATGGTCATTTTGG CATCGTTGTAGACCTAATCAGCAACTCCATGGTCATTTTGG < 41bp 0.523587797632338 0.728274249979195 NA NA prediction 0.409372904693714 Functional Gain - GPR50 ENSG00000102195 CDS Human protein_coding chrX:150345327 chrX:150345326 nonsynonymous SNV 0.827 3 20 hm7G_associated_SNPs_33485 0 0 0 0 1 GPR50 chrX:150345380 5'GT 150345380 Upstream 55bp 30727 chr10 70673242 70673242 1 + C T UCEC 70673243 + 70673223 70673263 41 ATTGGATCTTTCTAAACTGCGACATGTTGTGCTTGATGAAG ATTGGATCTTTCTAAACTGTGACATGTTGTGCTTGATGAAG < 41bp 0.517682174509805 0.72236757930651 NA NA prediction 0.409370809593409 Functional Gain - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70673243 chr10:70673242 stopgain 0.997 1 20 hm7G_associated_SNPs_33486 0 0 1 0 2 DDX50 chr10:70673147 3'AG 70673147 Downstream 96bp 30728 chr10 70673242 70673242 1 + C T UCEC 70673243 + 70673223 70673263 41 ATTGGATCTTTCTAAACTGCGACATGTTGTGCTTGATGAAG ATTGGATCTTTCTAAACTGTGACATGTTGTGCTTGATGAAG < 41bp 0.517682174509805 0.72236757930651 NA NA prediction 0.409370809593409 Functional Gain - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70673243 chr10:70673242 stopgain 0.997 1 20 hm7G_associated_SNPs_33486 0 0 1 0 2 DDX50 chr10:70673332 5'GT 70673332 Upstream 91bp 30729 chr1 45268955 45268955 1 + C T SKCM 45268956 + 45268936 45268976 41 CTAGGGCTACACCCCCGATCGACTCCCTATCAGCAGCTGCG CTAGGGCTACACCCCCGATTGACTCCCTATCAGCAGCTGCG < 41bp 0.534566319204864 0.739251386753512 NA NA prediction 0.409370135097297 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268956 chr1:45268955 stopgain 0.988 0 20 hm7G_associated_SNPs_33487 0 0 1 0 1 PLK3 chr1:45268940 3'AG 45268940 Downstream 16bp 30730 chr17 73746856 73746856 1 + C T rs138462843 73746857 + 73746837 73746877 41 CCAACCTGTACCCGTATTGCGACTATGAGATGAAGGTGTGC CCAACCTGTACCCGTATTGTGACTATGAGATGAAGGTGTGC < 41bp 0.507207341092214 0.711890815349336 NA NA prediction 0.409366948514243 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73746857 chr17:73746856 synonymous SNV . 0 20 hm7G_associated_SNPs_33488 0 0 0 0 2 ITGB4 chr17:73746761 3'AG 73746761 Downstream 96bp 30731 chr17 73746856 73746856 1 + C T rs138462843 73746857 + 73746837 73746877 41 CCAACCTGTACCCGTATTGCGACTATGAGATGAAGGTGTGC CCAACCTGTACCCGTATTGTGACTATGAGATGAAGGTGTGC < 41bp 0.507207341092214 0.711890815349336 NA NA prediction 0.409366948514243 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73746857 chr17:73746856 synonymous SNV . 0 20 hm7G_associated_SNPs_33488 0 0 0 0 2 ITGB4 chr17:73746941 5'GT 73746941 Upstream 86bp 30732 chr6 158497759 158497759 1 + C T UCEC 158497760 + 158497740 158497780 41 GCGACAAATGCCGCACCCCCGCCTGGACAGACAGGGTGCTG GCGACAAATGCCGCACCCCTGCCTGGACAGACAGGGTGCTG < 41bp 0.537240702219044 0.741923451394693 NA NA prediction 0.409365498351299 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158497760 chr6:158497759 synonymous SNV . 0 20 hm7G_associated_SNPs_33490 0 0 1 0 1 SYNJ2 chr6:158497814 5'GT 158497814 Upstream 56bp 30733 chr2 220147938 220147938 1 + C T COAD 220147939 + 220147919 220147959 41 TACCACCTTTGTCCAAGGACGCCGCATCACCACACGCAGGT TACCACCTTTGTCCAAGGATGCCGCATCACCACACGCAGGT < 41bp 0.528787129467903 0.733469427989439 NA NA prediction 0.409364597043072 Functional Gain - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147939 chr2:220147938 nonsynonymous SNV 0.485 2 20 hm7G_associated_SNPs_33494 0 0 1 0 2 DNAJB2 chr2:220147855 3'AG 220147855 Downstream 84bp 30734 chr2 220147938 220147938 1 + C T COAD 220147939 + 220147919 220147959 41 TACCACCTTTGTCCAAGGACGCCGCATCACCACACGCAGGT TACCACCTTTGTCCAAGGATGCCGCATCACCACACGCAGGT < 41bp 0.528787129467903 0.733469427989439 NA NA prediction 0.409364597043072 Functional Gain - DNAJB2 ENSG00000135924 CDS Human protein_coding chr2:220147939 chr2:220147938 nonsynonymous SNV 0.485 2 20 hm7G_associated_SNPs_33494 0 0 1 0 2 DNAJB2 chr2:220147957 5'GT 220147957 Upstream 20bp 30735 chr16 67006313 67006313 1 + C T STAD 67006314 + 67006294 67006334 41 CATCGACCCAGTTCTTTTGCGAAGATCAAACCTGCCTGGGT CATCGACCCAGTTCTTTTGTGAAGATCAAACCTGCCTGGGT < 41bp 0.491635025504416 0.704682226041386 NA NA prediction 0.409364452082772 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67006314 chr16:67006313 stopgain 0.000 0 20 hm7G_associated_SNPs_33495 0 0 1 0 2 CES3 chr16:67006259 3'AG 67006259 Downstream 55bp 30736 chr16 67006313 67006313 1 + C T STAD 67006314 + 67006294 67006334 41 CATCGACCCAGTTCTTTTGCGAAGATCAAACCTGCCTGGGT CATCGACCCAGTTCTTTTGTGAAGATCAAACCTGCCTGGGT < 41bp 0.491635025504416 0.704682226041386 NA NA prediction 0.409364452082772 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67006314 chr16:67006313 stopgain 0.000 0 20 hm7G_associated_SNPs_33495 0 0 1 0 2 CES3 chr16:67006408 5'GT 67006408 Upstream 96bp 30737 chr10 104835904 104835904 1 + C T COAD 104835905 + 104835885 104835925 41 CAGACTCTCTCAGTCGAAGCGACCGGATTGACGCCGTCACA CAGACTCTCTCAGTCGAAGTGACCGGATTGACGCCGTCACA < 41bp 0.492761767995708 0.704681674571038 NA NA prediction 0.409363349142077 Functional Gain - CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104835905 chr10:104835904 synonymous SNV . 0 20 hm7G_associated_SNPs_33496 0 0 0 0 1 CNNM2 chr10:104835843 3'AG 104835843 Downstream 62bp 30738 chr2 11905715 11905715 1 + G T CESC 11905716 + 11905696 11905736 41 AGGTGTTTGTCACCGTGAAGGAGCTCTACAAGGGGCTGAAT AGGTGTTTGTCACCGTGAATGAGCTCTACAAGGGGCTGAAT < 41bp 0.355161516718963 0.704681324100598 NA NA prediction 0.409362648201195 Functional Gain - LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11905716 chr2:11905715 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33497 0 0 1 0 1 LPIN1 chr2:11905659 3'AG 11905659 Downstream 57bp 30739 chr4 3451045 3451045 1 + G A CESC 3451046 + 3451026 3451066 41 CAGCTGGGGTGACGGCTGCGGGCGGCTCCACAAGCCGGGGG CAGCTGGGGTGACGGCTGCAGGCGGCTCCACAAGCCGGGGG < 41bp 0.559691644090085 0.764369601963888 NA NA prediction 0.409355915747607 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3451046 chr4:3451045 nonsynonymous SNV 0.898 5 20 hm7G_associated_SNPs_33498 0 0 1 0 1 HGFAC chr4:3450964 3'AG 3450964 Downstream 82bp 30740 chr9 117085972 117085972 1 + G A UCEC 117085973 + 117085953 117085993 41 AGTGGTTTTATATCGCATCGGCCTTTCGAAACGAGGAGTAC AGTGGTTTTATATCGCATCAGCCTTTCGAAACGAGGAGTAC < 41bp 0.537918549797771 0.742596346245554 NA NA prediction 0.409355592895567 Functional Gain - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117085973 chr9:117085972 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33499 0 0 0 0 1 ORM1 chr9:117085943 3'AG 117085943 Downstream 30bp 30741 chr2 219754782 219754782 1 + G T LUAD 219754783 + 219754763 219754803 41 TGTCCAATGCGTGTGCCCTGGGCAAACTGAAGGCCTGTGGC TGTCCAATGCGTGTGCCCTTGGCAAACTGAAGGCCTGTGGC < 41bp 0.711076173584049 0.915753196234917 NA NA prediction 0.409354045301736 Functional Gain - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219754783 chr2:219754782 synonymous SNV . 0 20 hm7G_associated_SNPs_33501 0 0 0 0 1 WNT10A chr2:219754706 3'AG 219754706 Downstream 77bp 30742 chr18 59195390 59195390 1 + C T STAD 59195391 + 59195371 59195411 41 GAGGTGCCTGAGGATGTGGCGATTGGAACAACCATACAGAT GAGGTGCCTGAGGATGTGGTGATTGGAACAACCATACAGAT < 41bp 0.543417824321196 0.748094119501352 NA NA prediction 0.409352590360311 Functional Gain - CDH20 ENSG00000101542 CDS Human protein_coding chr18:59195391 chr18:59195390 nonsynonymous SNV 0.821 0 20 hm7G_associated_SNPs_33502 0 0 0 0 1 CDH20 chr18:59195453 5'GT 59195453 Upstream 64bp 30743 chr10 23319564 23319564 1 + G T COAD 23319565 + 23319545 23319585 41 AAGAGGAAAAAGTGAAAGAGGAGGAAGAGGTTATGGTGGTA AAGAGGAAAAAGTGAAAGATGAGGAAGAGGTTATGGTGGTA < 41bp 0.695894303410992 0.900569345739418 NA NA prediction 0.409350084656853 Functional Gain - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23319565 chr10:23319564 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_33503 0 0 0 0 1 ARMC3 chr10:23319525 3'AG 23319525 Downstream 40bp 30744 chr7 127239453 127239453 1 + G T LUAD 127239454 + 127239434 127239474 41 GGCCCAAATGAGGAATTTGGGATTTTATTTGCCAATCGCTC GGCCCAAATGAGGAATTTGTGATTTTATTTGCCAATCGCTC < 41bp 0.366878348103907 0.704673365044068 NA NA prediction 0.409346730088135 Functional Gain - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127239454 chr7:127239453 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_33504 0 0 0 0 1 FSCN3 chr7:127239435 3'AG 127239435 Downstream 19bp 30745 chr2 63221066 63221066 1 + C T COAD 63221067 + 63221047 63221087 41 GGAAATGAGGAGAAGGCAGCGATAACTGAAACTCAGAGGAA GGAAATGAGGAGAAGGCAGTGATAACTGAAACTCAGAGGAA < 41bp 0.50174814233066 0.706419450187873 NA NA prediction 0.409342615714428 Functional Gain - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63221067 chr2:63221066 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_33505 0 0 1 0 2 EHBP1 chr2:63221006 3'AG 63221006 Downstream 61bp 30746 chr2 63221066 63221066 1 + C T COAD 63221067 + 63221047 63221087 41 GGAAATGAGGAGAAGGCAGCGATAACTGAAACTCAGAGGAA GGAAATGAGGAGAAGGCAGTGATAACTGAAACTCAGAGGAA < 41bp 0.50174814233066 0.706419450187873 NA NA prediction 0.409342615714428 Functional Gain - EHBP1 ENSG00000115504 CDS Human protein_coding chr2:63221067 chr2:63221066 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_33505 0 0 1 0 2 EHBP1 chr2:63221112 5'GT 63221112 Upstream 47bp 30747 chr20 60737811 60737811 1 + C T ESCA 60737812 + 60737792 60737832 41 CTGCTCCCCATGCCAGGGCCGAGCCACGTGTCCATGCAGCA CTGCTCCCCATGCCAGGGCTGAGCCACGTGTCCATGCAGCA < 41bp 0.539684912883745 0.744355378336423 NA NA prediction 0.409340930905356 Functional Gain - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60737812 chr20:60737811 nonsynonymous SNV 0.655 4 20 hm7G_associated_SNPs_33508 0 0 1 0 1 SS18L1 chr20:60737808 3'AG 60737808 Downstream 4bp 30748 chr17 73566560 73566560 1 + C T UCEC 73566561 + 73566541 73566581 41 TCCAGCCGGAAGCGGCACCCGGCTGGCCCCCCAGGAGAGGT TCCAGCCGGAAGCGGCACCTGGCTGGCCCCCCAGGAGAGGT < 41bp 0.50227335277073 0.706943720900742 NA NA prediction 0.409340736260024 Functional Gain - LLGL2 ENSG00000073350 CDS Human protein_coding chr17:73566561 chr17:73566560 nonsynonymous SNV 0.030 0 20 hm7G_associated_SNPs_33509 0 0 1 0 1 LLGL2 chr17:73566579 5'GT 73566579 Upstream 20bp 30749 chr16 57778313 57778313 1 + C T STAD 57778314 + 57778294 57778334 41 CTCTCTCCACAGAGCCTGACGGGCCACACATCCCCAGTGGA CTCTCTCCACAGAGCCTGATGGGCCACACATCCCCAGTGGA < 41bp 0.527595936085119 0.732266005941615 NA NA prediction 0.409340139712992 Functional Gain - KATNB1 ENSG00000140854 CDS Human protein_coding chr16:57778314 chr16:57778313 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33510 0 0 0 0 1 KATNB1 chr16:57778306 3'AG 57778306 Downstream 8bp 30750 chr18 77227575 77227575 1 + C T LGG 77227576 + 77227556 77227596 41 AGCGTTTCACCTACCTTCCCGCCAACGGTAACGCCATCTTT AGCGTTTCACCTACCTTCCTGCCAACGGTAACGCCATCTTT < 41bp 0.50151754759573 0.706186454642167 NA NA prediction 0.409337814092874 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77227576 chr18:77227575 synonymous SNV . 0 20 hm7G_associated_SNPs_33511 0 0 0 0 1 NFATC1 chr18:77227582 5'GT 77227582 Upstream 8bp 30751 chr17 7916452 7916452 1 + G A SKCM 7916453 + 7916433 7916473 41 CAGCCCCGGAGCTGCTTAGGGACCCAGCCCTGGAGCGCCGG CAGCCCCGGAGCTGCTTAGAGACCCAGCCCTGGAGCGCCGG < 41bp 0.576092094014576 0.780760959000955 NA NA prediction 0.409337729972757 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7916453 chr17:7916452 synonymous SNV . 0 20 hm7G_associated_SNPs_33512 0 0 0 0 1 GUCY2D chr17:7916421 3'AG 7916421 Downstream 32bp 30752 chr19 3907823 3907823 1 + C T CESC 3907824 + 3907804 3907844 41 AGGACGGCAGCGCCGCCAACGGGCGCCTGTGGCGGACAGTG AGGACGGCAGCGCCGCCAATGGGCGCCTGTGGCGGACAGTG < 41bp 0.535970723654929 0.740637051558563 NA NA prediction 0.409332655807268 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3907824 chr19:3907823 synonymous SNV . 0 20 hm7G_associated_SNPs_33513 0 0 0 0 2 ATCAY chr19:3907732 3'AG 3907732 Downstream 92bp 30753 chr19 3907823 3907823 1 + C T CESC 3907824 + 3907804 3907844 41 AGGACGGCAGCGCCGCCAACGGGCGCCTGTGGCGGACAGTG AGGACGGCAGCGCCGCCAATGGGCGCCTGTGGCGGACAGTG < 41bp 0.535970723654929 0.740637051558563 NA NA prediction 0.409332655807268 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3907824 chr19:3907823 synonymous SNV . 0 20 hm7G_associated_SNPs_33513 0 0 0 0 2 ATCAY chr19:3907917 5'GT 3907917 Upstream 95bp 30754 chr12 58002434 58002434 1 + C T UCEC 58002435 + 58002415 58002455 41 AGCGTCTCACCTTCACTATCGGCACGTCCATGACCACAGGG AGCGTCTCACCTTCACTATTGGCACGTCCATGACCACAGGG < 41bp 0.524892375953401 0.729558191872653 NA NA prediction 0.409331631838503 Functional Gain - DTX3 ENSG00000178498 CDS Human protein_coding chr12:58002435 chr12:58002434 synonymous SNV . 0 20 hm7G_associated_SNPs_33514 0 0 0 0 1 DTX3 chr12:58002520 5'GT 58002520 Upstream 87bp 30755 chr1 2103786 2103786 1 + C T SKCM 2103787 + 2103767 2103807 41 AGCACTTTCTGCGGAACCCCGAATTACATCGCCCCCGAAAT AGCACTTTCTGCGGAACCCTGAATTACATCGCCCCCGAAAT < 41bp 0.497416751663087 0.70466484108987 NA NA prediction 0.40932968217974 Functional Gain - PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2103787 chr1:2103786 nonsynonymous SNV 0.598 4 20 hm7G_associated_SNPs_33515 0 0 1 0 2 PRKCZ chr1:2103740 3'AG 2103740 Downstream 47bp 30756 chr1 2103786 2103786 1 + C T SKCM 2103787 + 2103767 2103807 41 AGCACTTTCTGCGGAACCCCGAATTACATCGCCCCCGAAAT AGCACTTTCTGCGGAACCCTGAATTACATCGCCCCCGAAAT < 41bp 0.497416751663087 0.70466484108987 NA NA prediction 0.40932968217974 Functional Gain - PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2103787 chr1:2103786 nonsynonymous SNV 0.598 4 20 hm7G_associated_SNPs_33515 0 0 1 0 2 PRKCZ chr1:2103827 5'GT 2103827 Upstream 42bp 30757 chr12 10464098 10464098 1 + G T UCEC 10464099 + 10464079 10464119 41 TTGCCAAGAAAAATGGGTTGGGTACCGGTGCAACTGTTACT TTGCCAAGAAAAATGGGTTTGGTACCGGTGCAACTGTTACT < 41bp 0.702696664475297 0.907361204195019 NA NA prediction 0.409329079439444 Functional Gain - KLRD1 ENSG00000134539 CDS Human protein_coding chr12:10464099 chr12:10464098 nonsynonymous SNV 0.154 3 20 hm7G_associated_SNPs_33516 0 0 0 0 1 KLRD1 chr12:10464063 3'AG 10464063 Downstream 36bp 30758 chr19 54418632 54418632 1 + G T LUSC 54418633 + 54418613 54418653 41 CCCCAGAGACAGTGCGCACGGCCACCCCCTTCCCCATGGTC CCCCAGAGACAGTGCGCACTGCCACCCCCTTCCCCATGGTC < 41bp 0.340738206349513 0.704661807181064 NA NA prediction 0.409323614362128 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54418633 chr19:54418632 synonymous SNV . 0 20 hm7G_associated_SNPs_33517 0 0 0 0 1 CACNG7 chr19:54418619 3'AG 54418619 Downstream 14bp 30759 chrX 153543660 153543660 1 + C T UCEC 153543661 + 153543641 153543681 41 AGTACCCTGAGCGCTTCATCGAGTGCTTTATGGCTGAACAA AGTACCCTGAGCGCTTCATTGAGTGCTTTATGGCTGAACAA < 41bp 0.492994301067681 0.704661731447446 NA NA prediction 0.409323462894892 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153543661 chrX:153543660 synonymous SNV . 0 20 hm7G_associated_SNPs_33518 0 0 0 0 1 TKTL1 chrX:153543687 5'GT 153543687 Upstream 28bp 30760 chr5 176523717 176523717 1 + C T OV 176523718 + 176523698 176523738 41 GGAGGGACATCGGATGGACCGACCCCCACACTGCCCCCCAG GGAGGGACATCGGATGGACTGACCCCCACACTGCCCCCCAG < 41bp 0.514490191549303 0.719149657784887 NA NA prediction 0.409318932471169 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176523718 chr5:176523717 stopgain 0.998 1 20 hm7G_associated_SNPs_33520 0 0 1 0 1 FGFR4 chr5:176523742 5'GT 176523742 Upstream 26bp 30761 chr6 151914298 151914298 1 + C T SKCM 151914299 + 151914279 151914319 41 AGTTGGACCAGATGGCTGCCGAACTTGGCTTTGACATGCGG AGTTGGACCAGATGGCTGCTGAACTTGGCTTTGACATGCGG < 41bp 0.515237841433749 0.719896708234221 NA NA prediction 0.409317733600945 Functional Gain - CCDC170 ENSG00000120262 CDS Human protein_coding chr6:151914299 chr6:151914298 synonymous SNV . 0 20 hm7G_associated_SNPs_33522 0 0 0 0 1 CCDC170 chr6:151914242 3'AG 151914242 Downstream 57bp 30762 chr19 41704707 41704707 1 + C T STAD 41704708 + 41704688 41704728 41 CTTGGCTGCCTTCACAGTCCGGCAGGTGCAGCAGCACCAGG CTTGGCTGCCTTCACAGTCTGGCAGGTGCAGCAGCACCAGG < 41bp 0.526643902703587 0.731301991216886 NA NA prediction 0.409316177026597 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41704708 chr19:41704707 nonsynonymous SNV 0.522 1 20 hm7G_associated_SNPs_33523 0 0 0 0 2 CYP2S1 chr19:41704614 3'AG 41704614 Downstream 94bp 30763 chr19 41704707 41704707 1 + C T STAD 41704708 + 41704688 41704728 41 CTTGGCTGCCTTCACAGTCCGGCAGGTGCAGCAGCACCAGG CTTGGCTGCCTTCACAGTCTGGCAGGTGCAGCAGCACCAGG < 41bp 0.526643902703587 0.731301991216886 NA NA prediction 0.409316177026597 Functional Gain - CYP2S1 ENSG00000167600 CDS Human protein_coding chr19:41704708 chr19:41704707 nonsynonymous SNV 0.522 1 20 hm7G_associated_SNPs_33523 0 0 0 0 2 CYP2S1 chr19:41704793 5'GT 41704793 Upstream 87bp 30764 chr3 113784227 113784227 1 + C T UCEC 113784228 + 113784208 113784248 41 TGTATACCAAGACTGGCTCCGCCCCACACCTCACCCATCAC TGTATACCAAGACTGGCTCTGCCCCACACCTCACCCATCAC < 41bp 0.488678756500602 0.70465737131286 NA NA prediction 0.40931474262572 Functional Gain - QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113784228 chr3:113784227 synonymous SNV . 0 20 hm7G_associated_SNPs_33524 0 0 0 0 1 QTRT2 chr3:113784304 5'GT 113784304 Upstream 78bp 30765 chr17 48432899 48432899 1 + C T ESCA 48432900 + 48432880 48432920 41 GGCATTCCTATCCAAGAACCGGGACAAGAATTTCCTCAAGT GGCATTCCTATCCAAGAACTGGGACAAGAATTTCCTCAAGT < 41bp 0.525540388453474 0.730197648301 NA NA prediction 0.409314519695053 Functional Gain - XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48432900 chr17:48432899 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33525 0 0 1 0 2 XYLT2 chr17:48432862 3'AG 48432862 Downstream 38bp 30766 chr17 48432899 48432899 1 + C T ESCA 48432900 + 48432880 48432920 41 GGCATTCCTATCCAAGAACCGGGACAAGAATTTCCTCAAGT GGCATTCCTATCCAAGAACTGGGACAAGAATTTCCTCAAGT < 41bp 0.525540388453474 0.730197648301 NA NA prediction 0.409314519695053 Functional Gain - XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48432900 chr17:48432899 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33525 0 0 1 0 2 XYLT2 chr17:48432942 5'GT 48432942 Upstream 44bp 30767 chr3 50312302 50312302 1 + G A COAD 50312303 + 50312283 50312323 41 CGGTGCTGAAGGTGATCTCGGTCCCCAAGGGCAGTAGGCCC CGGTGCTGAAGGTGATCTCAGTCCCCAAGGGCAGTAGGCCC < 41bp 0.565641155528871 0.770295593313851 NA NA prediction 0.40930887556996 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50312303 chr3:50312302 . . 0 20 hm7G_associated_SNPs_33527 0 0 1 0 2 SEMA3B chr3:50312274 3'AG 50312274 Downstream 29bp 30768 chr3 50312302 50312302 1 + G A COAD 50312303 + 50312283 50312323 41 CGGTGCTGAAGGTGATCTCGGTCCCCAAGGGCAGTAGGCCC CGGTGCTGAAGGTGATCTCAGTCCCCAAGGGCAGTAGGCCC < 41bp 0.565641155528871 0.770295593313851 NA NA prediction 0.40930887556996 Functional Gain - SEMA3B ENSG00000012171 ncRNA_exonic Human protein_coding chr3:50312303 chr3:50312302 . . 0 20 hm7G_associated_SNPs_33527 0 0 1 0 2 SEMA3B chr3:50312365 5'GT 50312365 Upstream 64bp 30769 chr2 167108386 167108386 1 - G A rs190664764 167108385 - 167108365 167108405 41 TCCTTTCTAGAGATTAAACCGGTCAAGCTCCTCAGAGTGCA TCCTTTCTAGAGATTAAACTGGTCAAGCTCCTCAGAGTGCA < 41bp 0.532177824862802 0.736831622938759 NA NA prediction 0.409307596151915 Functional Gain - SCN9A ENSG00000169432 CDS Human protein_coding chr2:167108385 chr2:167108386 nonsynonymous SNV 0.424 2 20 hm7G_associated_SNPs_33529 4 0 0 0 1 SCN9A chr2:167108395 3'AG 167108395 Downstream 10bp 30770 chr15 22999381 22999381 1 + C T UCEC 22999382 + 22999362 22999402 41 GGACCTGCTGACAAAGGAGCGCCTCTGCTGCGGCCTGTCCA GGACCTGCTGACAAAGGAGTGCCTCTGCTGCGGCCTGTCCA < 41bp 0.535553186328712 0.740206773004661 NA NA prediction 0.409307173351899 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22999382 chr15:22999381 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33530 0 0 1 0 1 CYFIP1 chr15:22999339 3'AG 22999339 Downstream 43bp 30771 chr17 26711558 26711558 1 + C T UCEC 26711559 + 26711539 26711579 41 AGACGTGGCTGCAGCAGATCGGTTTCTCCAAGTACTGCGAG AGACGTGGCTGCAGCAGATTGGTTTCTCCAAGTACTGCGAG < 41bp 0.541110091172521 0.745761338128759 NA NA prediction 0.409302493912477 Functional Gain - SARM1 ENSG00000004139 CDS Human protein_coding chr17:26711559 chr17:26711558 synonymous SNV . 0 20 hm7G_associated_SNPs_33531 0 0 0 0 1 SARM1 chr17:26711588 5'GT 26711588 Upstream 31bp 30772 chr2 3392378 3392378 1 + C T STAD 3392379 + 3392359 3392399 41 CCGTGGCCACCCAGCAGCGCGGCGCCGTGTTCGTGGACAAG CCGTGGCCACCCAGCAGCGTGGCGCCGTGTTCGTGGACAAG < 41bp 0.519902333531613 0.72455307501511 NA NA prediction 0.409301482966995 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3392379 chr2:3392378 synonymous SNV . 0 20 hm7G_associated_SNPs_33532 0 0 1 0 1 TRAPPC12 chr2:3392441 5'GT 3392441 Upstream 64bp 30773 chr11 65043426 65043426 1 + C T UCEC 65043427 + 65043407 65043447 41 AAAAAGGAGTGTGTCAACTCGTAGCCCCCATCAGCTACTCT AAAAAGGAGTGTGTCAACTTGTAGCCCCCATCAGCTACTCT < 41bp 0.49055368983623 0.704650099366816 NA NA prediction 0.409300198733632 Functional Gain - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65043427 chr11:65043426 nonsynonymous SNV 0.288 2 20 hm7G_associated_SNPs_33533 0 0 1 0 1 POLA2 chr11:65043469 5'GT 65043469 Upstream 44bp 30774 chr11 68840100 68840100 1 + G A COAD 68840101 + 68840081 68840121 41 GTTTTTCCCTGCAGAGTTGGGGTGAAGCCCCAGAACTTGCT GTTTTTCCCTGCAGAGTTGAGGTGAAGCCCCAGAACTTGCT < 41bp 0.534949283093209 0.739596537742855 NA NA prediction 0.409294509299292 Functional Gain - TPCN2 ENSG00000162341 CDS Human protein_coding chr11:68840101 chr11:68840100 nonsynonymous SNV 0.411 1 20 hm7G_associated_SNPs_33534 0 0 1 0 1 TPCN2 chr11:68840176 5'GT 68840176 Upstream 77bp 30775 chr6 39034026 39034026 1 + C T UCEC 39034027 + 39034007 39034047 41 TCATCTACACGGTGGGCTACGCACTCTCCTTCTCTGCTCTG TCATCTACACGGTGGGCTATGCACTCTCCTTCTCTGCTCTG < 41bp 0.548596789803587 0.753239700613505 NA NA prediction 0.409285821619838 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39034027 chr6:39034026 synonymous SNV . 0 20 hm7G_associated_SNPs_33535 0 0 0 0 2 GLP1R chr6:39033973 3'AG 39033973 Downstream 54bp 30776 chr6 39034026 39034026 1 + C T UCEC 39034027 + 39034007 39034047 41 TCATCTACACGGTGGGCTACGCACTCTCCTTCTCTGCTCTG TCATCTACACGGTGGGCTATGCACTCTCCTTCTCTGCTCTG < 41bp 0.548596789803587 0.753239700613505 NA NA prediction 0.409285821619838 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39034027 chr6:39034026 synonymous SNV . 0 20 hm7G_associated_SNPs_33535 0 0 0 0 2 GLP1R chr6:39034079 5'GT 39034079 Upstream 54bp 30777 chr16 2025354 2025354 1 + G A rs35544607 2025355 + 2025335 2025375 41 TTCGTCTCCAGAGCGTGGAGGCTGCTGTGCTGTTGCCAGAG TTCGTCTCCAGAGCGTGGAAGCTGCTGTGCTGTTGCCAGAG < 41bp 0.566266148694823 0.770901302377776 NA NA prediction 0.409270307365905 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2025355 chr16:2025354 synonymous SNV . 0 20 hm7G_associated_SNPs_33539 0 0 1 0 2 TBL3 chr16:2025346 3'AG 2025346 Downstream 9bp 30778 chr16 2025354 2025354 1 + G A rs35544607 2025355 + 2025335 2025375 41 TTCGTCTCCAGAGCGTGGAGGCTGCTGTGCTGTTGCCAGAG TTCGTCTCCAGAGCGTGGAAGCTGCTGTGCTGTTGCCAGAG < 41bp 0.566266148694823 0.770901302377776 NA NA prediction 0.409270307365905 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2025355 chr16:2025354 synonymous SNV . 0 20 hm7G_associated_SNPs_33539 0 0 1 0 2 TBL3 chr16:2025439 5'GT 2025439 Upstream 86bp 30779 chr4 17524637 17524637 1 + G A LUAD 17524638 + 17524618 17524658 41 CGGGCAGTCAGCGGTCCTGGGGGCATCTGCCTATGGAATGT CGGGCAGTCAGCGGTCCTGAGGGCATCTGCCTATGGAATGT < 41bp 0.556816983029091 0.761451822551048 NA NA prediction 0.409269679043914 Functional Gain - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17524638 chr4:17524637 nonsynonymous SNV 0.565 0 20 hm7G_associated_SNPs_33540 0 0 0 0 1 CLRN2 chr4:17524666 5'GT 17524666 Upstream 30bp 30780 chr12 50367285 50367285 1 + G A THCA 50367286 + 50367266 50367306 41 GTGGCTGCCCAGCTGGTGGGGGCCACGGTGGGGGCTGCTCT GTGGCTGCCCAGCTGGTGGAGGCCACGGTGGGGGCTGCTCT < 41bp 0.568263628622648 0.772898100893214 NA NA prediction 0.409268944541133 Functional Gain - AQP6 ENSG00000086159 CDS Human protein_coding chr12:50367286 chr12:50367285 nonsynonymous SNV 0.288 4 20 hm7G_associated_SNPs_33541 0 0 0 0 1 AQP6 chr12:50367358 5'GT 50367358 Upstream 74bp 30781 chr14 77715147 77715147 1 + C T UCEC 77715148 + 77715128 77715168 41 CAGTTTGGGCGTGAGTATGCGTGGATGATGAACGTGTTCAG CAGTTTGGGCGTGAGTATGTGTGGATGATGAACGTGTTCAG < 41bp 0.525109434331017 0.729742583968576 NA NA prediction 0.409266299275117 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77715148 chr14:77715147 nonsynonymous SNV 0.852 4 20 hm7G_associated_SNPs_33542 0 0 0 0 2 TMEM63C chr14:77715110 3'AG 77715110 Downstream 38bp 30782 chr14 77715147 77715147 1 + C T UCEC 77715148 + 77715128 77715168 41 CAGTTTGGGCGTGAGTATGCGTGGATGATGAACGTGTTCAG CAGTTTGGGCGTGAGTATGTGTGGATGATGAACGTGTTCAG < 41bp 0.525109434331017 0.729742583968576 NA NA prediction 0.409266299275117 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77715148 chr14:77715147 nonsynonymous SNV 0.852 4 20 hm7G_associated_SNPs_33542 0 0 0 0 2 TMEM63C chr14:77715215 5'GT 77715215 Upstream 69bp 30783 chr15 101169707 101169707 1 + C T UCEC 101169708 + 101169688 101169728 41 CTATGCAGCCATGCATGGCCGGGCCCGCATTGCACGCTTGA CTATGCAGCCATGCATGGCTGGGCCCGCATTGCACGCTTGA < 41bp 0.504715595620973 0.709348577999606 NA NA prediction 0.409265964757266 Functional Gain - ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169708 chr15:101169707 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33543 0 0 1 0 1 ASB7 chr15:101169642 3'AG 101169642 Downstream 66bp 30784 chr1 27589698 27589698 1 + G A rs138811320 27589699 + 27589679 27589719 41 GTCACTGACCCCTTTATCCGGCGGCTGGGCCTGGAAGCAGA GTCACTGACCCCTTTATCCAGCGGCTGGGCCTGGAAGCAGA < 41bp 0.564756526835821 0.769389293837398 NA NA prediction 0.409265534003154 Functional Gain - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27589699 chr1:27589698 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_33544 0 0 1 0 2 WDTC1 chr1:27589643 3'AG 27589643 Downstream 56bp 30785 chr1 27589698 27589698 1 + G A rs138811320 27589699 + 27589679 27589719 41 GTCACTGACCCCTTTATCCGGCGGCTGGGCCTGGAAGCAGA GTCACTGACCCCTTTATCCAGCGGCTGGGCCTGGAAGCAGA < 41bp 0.564756526835821 0.769389293837398 NA NA prediction 0.409265534003154 Functional Gain - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27589699 chr1:27589698 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_33544 0 0 1 0 2 WDTC1 chr1:27589726 5'GT 27589726 Upstream 29bp 30786 chr19 45389458 45389458 1 + C T OV 45389459 + 45389439 45389479 41 CCCCCTACTTTGATGCTGGCGCCTCATGCACTGAGCAGGTA CCCCCTACTTTGATGCTGGTGCCTCATGCACTGAGCAGGTA < 41bp 0.545285480642534 0.749918219043019 NA NA prediction 0.40926547680097 Functional Gain - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389459 chr19:45389458 synonymous SNV . 0 20 hm7G_associated_SNPs_33545 0 0 0 0 2 NECTIN2 chr19:45389390 3'AG 45389390 Downstream 69bp 30787 chr19 45389458 45389458 1 + C T OV 45389459 + 45389439 45389479 41 CCCCCTACTTTGATGCTGGCGCCTCATGCACTGAGCAGGTA CCCCCTACTTTGATGCTGGTGCCTCATGCACTGAGCAGGTA < 41bp 0.545285480642534 0.749918219043019 NA NA prediction 0.40926547680097 Functional Gain - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389459 chr19:45389458 synonymous SNV . 0 20 hm7G_associated_SNPs_33545 0 0 0 0 2 NECTIN2 chr19:45389476 5'GT 45389476 Upstream 19bp 30788 chr22 40066188 40066188 1 + G A HNSC 40066189 + 40066169 40066209 41 CAGGAGGCTGAAGAGGCACGGCGGCGTGAGGAGAAGCGGCT CAGGAGGCTGAAGAGGCACAGCGGCGTGAGGAGAAGCGGCT < 41bp 0.493432762813876 0.704631935728625 NA NA prediction 0.409263871457251 Functional Gain - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40066189 chr22:40066188 nonsynonymous SNV 0.113 3 20 hm7G_associated_SNPs_33546 0 0 0 0 1 CACNA1I chr22:40066235 5'GT 40066235 Upstream 48bp 30789 chr9 136522343 136522343 1 - C T rs190637473 136522342 - 136522322 136522362 41 TGGCAGCGCACCTGGAAGCGGACGGCTGAGGACTTGTTGCA TGGCAGCGCACCTGGAAGCAGACGGCTGAGGACTTGTTGCA < 41bp 0.533573773959254 0.738204466331275 NA NA prediction 0.409261384744042 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136522342 chr9:136522343 nonsynonymous SNV 0.085 2 20 hm7G_associated_SNPs_33548 0 0 0 0 1 DBH chr9:136522249 5'GT 136522249 Upstream 95bp 30790 chr12 109945433 109945433 1 + C T rs114187931 109945434 + 109945414 109945454 41 TCTGTGAGCTCGGGCCCCACGGAGGGTTAAAGCTCTTCTTG TCTGTGAGCTCGGGCCCCATGGAGGGTTAAAGCTCTTCTTG < 41bp 0.52672047660311 0.73135021762927 NA NA prediction 0.409259482052322 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109945434 chr12:109945433 synonymous SNV . 0 20 hm7G_associated_SNPs_33549 0 0 1 0 1 UBE3B chr12:109945369 3'AG 109945369 Downstream 65bp 30791 chr10 82269158 82269158 1 + C T HNSC 82269159 + 82269139 82269179 41 ACCGGTTCCGGGAGTTCTTCGAGAGCAACATCAAGTCCTAC ACCGGTTCCGGGAGTTCTTTGAGAGCAACATCAAGTCCTAC < 41bp 0.489264712841586 0.704629562303634 NA NA prediction 0.409259124607269 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82269159 chr10:82269158 synonymous SNV . 0 20 hm7G_associated_SNPs_33550 0 0 1 0 1 TSPAN14 chr10:82269227 5'GT 82269227 Upstream 70bp 30792 chr11 132204969 132204969 1 + G T LUAD 132204970 + 132204950 132204990 41 CGTCAGCGAGGTGAGCAACGGCACGTCGAGGAGGGCAGGCT CGTCAGCGAGGTGAGCAACTGCACGTCGAGGAGGGCAGGCT < 41bp 0.433184222130654 0.704629310521231 NA NA prediction 0.409258621042461 Functional Gain - NTM ENSG00000182667 CDS Human protein_coding chr11:132204970 chr11:132204969 nonsynonymous SNV 0.022 3 20 hm7G_associated_SNPs_33551 0 0 0 0 1 NTM chr11:132204940 3'AG 132204940 Downstream 30bp 30793 chr15 25221513 25221513 1 + C T LUSC 25221514 + 25221494 25221534 41 TTTGGGTCTGGTGTTGCTGCGTGGGGAGAACTTGGTATCCA TTTGGGTCTGGTGTTGCTGTGTGGGGAGAACTTGGTATCCA < 41bp 0.497261817414678 0.704627652907846 NA NA prediction 0.409255305815693 Functional Gain - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25221514 chr15:25221513 nonsynonymous SNV 0.616 4 20 hm7G_associated_SNPs_33552 0 0 1 0 2 SNRPN chr15:25221452 3'AG 25221452 Downstream 62bp 30794 chr15 25221513 25221513 1 + C T LUSC 25221514 + 25221494 25221534 41 TTTGGGTCTGGTGTTGCTGCGTGGGGAGAACTTGGTATCCA TTTGGGTCTGGTGTTGCTGTGTGGGGAGAACTTGGTATCCA < 41bp 0.497261817414678 0.704627652907846 NA NA prediction 0.409255305815693 Functional Gain - SNRPN ENSG00000128739 CDS Human protein_coding chr15:25221514 chr15:25221513 nonsynonymous SNV 0.616 4 20 hm7G_associated_SNPs_33552 0 0 1 0 2 SNRPN chr15:25221563 5'GT 25221563 Upstream 51bp 30795 chr7 893221 893221 1 + C T STAD 893222 + 893202 893242 41 GCTGCCGGGCCGTCAGCTTCGGTCAGAGACGCTGTGGGACA GCTGCCGGGCCGTCAGCTTTGGTCAGAGACGCTGTGGGACA < 41bp 0.515773982533799 0.720400448491931 NA NA prediction 0.409252931916264 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:893222 chr7:893221 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_33553 0 0 1 0 2 SUN1 chr7:893222 5'GT 893222 Upstream 2bp 30796 chr7 893221 893221 1 + C T STAD 893222 + 893202 893242 41 GCTGCCGGGCCGTCAGCTTCGGTCAGAGACGCTGTGGGACA GCTGCCGGGCCGTCAGCTTTGGTCAGAGACGCTGTGGGACA < 41bp 0.515773982533799 0.720400448491931 NA NA prediction 0.409252931916264 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:893222 chr7:893221 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_33553 0 0 1 0 2 SUN1 chr7:893255 5'GT 893255 Upstream 35bp 30797 chr4 8221101 8221101 1 + C T BLCA 8221102 + 8221082 8221122 41 TTGGCAGACTTCCAGGGCTCGGGGCCCGAAGAGATGACCTT TTGGCAGACTTCCAGGGCTTGGGGCCCGAAGAGATGACCTT < 41bp 0.537661459037932 0.742287772697404 NA NA prediction 0.409252627318942 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8221102 chr4:8221101 nonsynonymous SNV 0.150 0 20 hm7G_associated_SNPs_33554 0 0 1 0 1 SH3TC1 chr4:8221062 3'AG 8221062 Downstream 40bp 30798 chr22 51044104 51044104 1 + C T UCEC 51044105 + 51044085 51044125 41 ACATGCGCACGGGGGAGCGCGGTGTGTTTCCTGCCTTCTAC ACATGCGCACGGGGGAGCGTGGTGTGTTTCCTGCCTTCTAC < 41bp 0.494749554884429 0.704626156759048 NA NA prediction 0.409252313518096 Functional Gain - MAPK8IP2 ENSG00000008735 CDS Human protein_coding chr22:51044105 chr22:51044104 synonymous SNV . 0 20 hm7G_associated_SNPs_33555 0 0 1 0 1 MAPK8IP2 chr22:51044162 5'GT 51044162 Upstream 59bp 30799 chr20 45355558 45355558 1 + C T LUAD 45355559 + 45355539 45355579 41 AGATACGAGGAAGAGCCTTCGCCTTCTGCAACAGCTTCAAC AGATACGAGGAAGAGCCTTTGCCTTCTGCAACAGCTTCAAC < 41bp 0.545542108831762 0.750168195017102 NA NA prediction 0.40925217237068 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355559 chr20:45355558 synonymous SNV . 0 20 hm7G_associated_SNPs_33556 0 0 1 0 2 SLC2A10 chr20:45355503 3'AG 45355503 Downstream 56bp 30800 chr20 45355558 45355558 1 + C T LUAD 45355559 + 45355539 45355579 41 AGATACGAGGAAGAGCCTTCGCCTTCTGCAACAGCTTCAAC AGATACGAGGAAGAGCCTTTGCCTTCTGCAACAGCTTCAAC < 41bp 0.545542108831762 0.750168195017102 NA NA prediction 0.40925217237068 Functional Gain - SLC2A10 ENSG00000197496 CDS Human protein_coding chr20:45355559 chr20:45355558 synonymous SNV . 0 20 hm7G_associated_SNPs_33556 0 0 1 0 2 SLC2A10 chr20:45355625 5'GT 45355625 Upstream 68bp 30801 chr11 64697849 64697849 1 + G A ESCA 64697850 + 64697830 64697870 41 TGAGCTGCTGGAGATCCTAGGAAGGTGATTCTCCCTGGGCC TGAGCTGCTGGAGATCCTAAGAAGGTGATTCTCCCTGGGCC < 41bp 0.49830798181722 0.704625998486502 NA NA prediction 0.409251996973003 Functional Gain - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64697850 chr11:64697849 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33557 0 0 1 0 2 PPP2R5B chr11:64697794 3'AG 64697794 Downstream 56bp 30802 chr11 64697849 64697849 1 + G A ESCA 64697850 + 64697830 64697870 41 TGAGCTGCTGGAGATCCTAGGAAGGTGATTCTCCCTGGGCC TGAGCTGCTGGAGATCCTAAGAAGGTGATTCTCCCTGGGCC < 41bp 0.49830798181722 0.704625998486502 NA NA prediction 0.409251996973003 Functional Gain - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64697850 chr11:64697849 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33557 0 0 1 0 2 PPP2R5B chr11:64697853 5'GT 64697853 Upstream 5bp 30803 chr14 23313029 23313029 1 + G A LUAD 23313030 + 23313010 23313050 41 TGGGCCCAACATCTGTGACGGGAACTTTGACACCGTGGCCA TGGGCCCAACATCTGTGACAGGAACTTTGACACCGTGGCCA < 41bp 0.519541411568593 0.724166650485807 NA NA prediction 0.409250477834427 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23313030 chr14:23313029 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33559 0 0 0 0 1 MMP14 chr14:23313079 5'GT 23313079 Upstream 51bp 30804 chr4 154215584 154215584 1 + C T CESC 154215585 + 154215565 154215605 41 CCAGAAGACTTTAAATGTGCGCAAGAGTGTGCTGCTTATGG CCAGAAGACTTTAAATGTGTGCAAGAGTGTGCTGCTTATGG < 41bp 0.514022088500434 0.718644274054319 NA NA prediction 0.409244371107769 Functional Gain - TRIM2 ENSG00000109654 CDS Human protein_coding chr4:154215585 chr4:154215584 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33561 0 0 0 0 1 TRIM2 chr4:154215637 5'GT 154215637 Upstream 54bp 30805 chr17 32959924 32959924 1 + C T rs148901847 32959925 + 32959905 32959945 41 GGTACCTATCCTCCCCGACCGGAGGTACAGCCCCTCTCCCA GGTACCTATCCTCCCCGACTGGAGGTACAGCCCCTCTCCCA < 41bp 0.515154730660194 0.719776038401807 NA NA prediction 0.409242615483226 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32959925 chr17:32959924 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_33562 0 0 0 0 1 TMEM132E chr17:32959928 5'GT 32959928 Upstream 5bp 30806 chr5 54649009 54649009 1 + C T LUAD 54649010 + 54648990 54649030 41 ACTTAGGCCTTATTTGCCACGGAGACCTTTGCTATGGGAAT ACTTAGGCCTTATTTGCCATGGAGACCTTTGCTATGGGAAT < 41bp 0.515961091508658 0.720582240759788 NA NA prediction 0.40924229850226 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54649010 chr5:54649009 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_33563 0 0 1 0 2 SKIV2L2 chr5:54648996 3'AG 54648996 Downstream 14bp 30807 chr5 54649009 54649009 1 + C T LUAD 54649010 + 54648990 54649030 41 ACTTAGGCCTTATTTGCCACGGAGACCTTTGCTATGGGAAT ACTTAGGCCTTATTTGCCATGGAGACCTTTGCTATGGGAAT < 41bp 0.515961091508658 0.720582240759788 NA NA prediction 0.40924229850226 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54649010 chr5:54649009 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_33563 0 0 1 0 2 SKIV2L2 chr5:54649097 5'GT 54649097 Upstream 89bp 30808 chr1 11591711 11591711 1 + G A SKCM 11591712 + 11591692 11591732 41 CCCGGGGCAGCTGTCCCACGGGGCAGTGGGCGTCAGGGAGG CCCGGGGCAGCTGTCCCACAGGGCAGTGGGCGTCAGGGAGG < 41bp 0.576683879014894 0.781304519552294 NA NA prediction 0.4092412810748 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11591712 chr1:11591711 nonsynonymous SNV 0.832 5 20 hm7G_associated_SNPs_33564 0 0 0 0 2 DISP3 chr1:11591622 3'AG 11591622 Downstream 90bp 30809 chr1 11591711 11591711 1 + G A SKCM 11591712 + 11591692 11591732 41 CCCGGGGCAGCTGTCCCACGGGGCAGTGGGCGTCAGGGAGG CCCGGGGCAGCTGTCCCACAGGGCAGTGGGCGTCAGGGAGG < 41bp 0.576683879014894 0.781304519552294 NA NA prediction 0.4092412810748 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11591712 chr1:11591711 nonsynonymous SNV 0.832 5 20 hm7G_associated_SNPs_33564 0 0 0 0 2 DISP3 chr1:11591767 5'GT 11591767 Upstream 57bp 30810 chr9 71098931 71098931 1 + G T CESC 71098932 + 71098912 71098952 41 CGGATAGTTTTGAATACGTGGACCCTGTGGATGGCACTGTG CGGATAGTTTTGAATACGTTGACCCTGTGGATGGCACTGTG < 41bp 0.367248811700346 0.704617096227491 NA NA prediction 0.409234192454983 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71098932 chr9:71098931 synonymous SNV . 0 20 hm7G_associated_SNPs_33565 0 0 0 0 1 PGM5 chr9:71098964 5'GT 71098964 Upstream 34bp 30811 chr16 67579592 67579592 1 + G A UCEC 67579593 + 67579573 67579613 41 TGGTGCGGAATCTGAACTCGGATGATCAGGCTGTTGTGCTG TGGTGCGGAATCTGAACTCAGATGATCAGGCTGTTGTGCTG < 41bp 0.504577049950096 0.709191672870329 NA NA prediction 0.409229245840466 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67579593 chr16:67579592 synonymous SNV . 0 20 hm7G_associated_SNPs_33567 0 0 1 0 1 RIPOR1 chr16:67579567 3'AG 67579567 Downstream 26bp 30812 chr10 43613844 43613844 1 + C T COAD 43613845 + 43613825 43613865 41 CGCCTCCCCGAGTGAGCTGCGAGACCTGCTGTCAGAGTTCA CGCCTCCCCGAGTGAGCTGTGAGACCTGCTGTCAGAGTTCA < 41bp 0.544514697122708 0.749127611366081 NA NA prediction 0.409225828486745 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43613845 chr10:43613844 stopgain 0.977 1 20 hm7G_associated_SNPs_33569 0 0 0 0 2 RET chr10:43613821 3'AG 43613821 Downstream 24bp 30813 chr10 43613844 43613844 1 + C T COAD 43613845 + 43613825 43613865 41 CGCCTCCCCGAGTGAGCTGCGAGACCTGCTGTCAGAGTTCA CGCCTCCCCGAGTGAGCTGTGAGACCTGCTGTCAGAGTTCA < 41bp 0.544514697122708 0.749127611366081 NA NA prediction 0.409225828486745 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43613845 chr10:43613844 stopgain 0.977 1 20 hm7G_associated_SNPs_33569 0 0 0 0 2 RET chr10:43613928 5'GT 43613928 Upstream 85bp 30814 chr8 144803788 144803788 1 + G A rs35834318 144803789 + 144803769 144803809 41 CTCCAAACTGCTCTCCTAGGGAATGGGGAAAGGCCCCCTGG CTCCAAACTGCTCTCCTAGAGAATGGGGAAAGGCCCCCTGG < 41bp 0.539535432473845 0.744146525033688 NA NA prediction 0.409222185119684 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144803789 chr8:144803788 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_33570 0 0 0 0 1 MAPK15 chr8:144803843 5'GT 144803843 Upstream 56bp 30815 chr11 65688366 65688366 1 + G T LUAD 65688367 + 65688347 65688387 41 GCTCACAGGATGAATCTGAGGACACAGATACTGATGGGGAA GCTCACAGGATGAATCTGATGACACAGATACTGATGGGGAA < 41bp 0.702664028977188 0.907273893904231 NA NA prediction 0.409219729854086 Functional Gain - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65688367 chr11:65688366 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33571 0 0 1 0 2 DRAP1 chr11:65688355 3'AG 65688355 Downstream 12bp 30816 chr11 65688366 65688366 1 + G T LUAD 65688367 + 65688347 65688387 41 GCTCACAGGATGAATCTGAGGACACAGATACTGATGGGGAA GCTCACAGGATGAATCTGATGACACAGATACTGATGGGGAA < 41bp 0.702664028977188 0.907273893904231 NA NA prediction 0.409219729854086 Functional Gain - DRAP1 ENSG00000175550 CDS Human protein_coding chr11:65688367 chr11:65688366 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33571 0 0 1 0 2 DRAP1 chr11:65688443 5'GT 65688443 Upstream 78bp 30817 chr1 203465273 203465273 1 + G T STAD 203465274 + 203465254 203465294 41 TTTGAAGTTCTGCCTCTGCGGAATGATGTCCTGAACCCAGA TTTGAAGTTCTGCCTCTGCTGAATGATGTCCTGAACCCAGA < 41bp 0.366841513529883 0.704609074086366 NA NA prediction 0.409218148172732 Functional Gain - OPTC ENSG00000188770 CDS Human protein_coding chr1:203465274 chr1:203465273 nonsynonymous SNV 0.010 1 20 hm7G_associated_SNPs_33572 0 0 0 0 1 OPTC chr1:203465364 5'GT 203465364 Upstream 92bp 30818 chr17 7250431 7250431 1 + G A STAD 7250432 + 7250412 7250452 41 AAGGGAGCCTGGGGGAGTCGGGCACGTGGTGGCCCAGGTCC AAGGGAGCCTGGGGGAGTCAGGCACGTGGTGGCCCAGGTCC < 41bp 0.605802819234534 0.810411510780605 NA NA prediction 0.409217383092142 Functional Gain - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7250432 chr17:7250431 nonsynonymous SNV 0.576 0 20 hm7G_associated_SNPs_33573 0 0 0 0 1 ACAP1 chr17:7250350 3'AG 7250350 Downstream 82bp 30819 chr11 12243246 12243246 1 + C T UCEC 12243247 + 12243227 12243267 41 TTCCTGGCAGCCTTTGACACGGCATGGATGGTGAAGAGCTG TTCCTGGCAGCCTTTGACATGGCATGGATGGTGAAGAGCTG < 41bp 0.534504494365257 0.73911057192804 NA NA prediction 0.409212155125565 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243247 chr11:12243246 nonsynonymous SNV 0.979 5 20 hm7G_associated_SNPs_33574 0 0 0 0 2 MICAL2 chr11:12243191 3'AG 12243191 Downstream 56bp 30820 chr11 12243246 12243246 1 + C T UCEC 12243247 + 12243227 12243267 41 TTCCTGGCAGCCTTTGACACGGCATGGATGGTGAAGAGCTG TTCCTGGCAGCCTTTGACATGGCATGGATGGTGAAGAGCTG < 41bp 0.534504494365257 0.73911057192804 NA NA prediction 0.409212155125565 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12243247 chr11:12243246 nonsynonymous SNV 0.979 5 20 hm7G_associated_SNPs_33574 0 0 0 0 2 MICAL2 chr11:12243306 5'GT 12243306 Upstream 61bp 30821 chr10 73051241 73051241 1 + C T READ 73051242 + 73051222 73051262 41 CTGACCTGACAGCCAGCGCCGGCATCTACCGCGGACCCGTG CTGACCTGACAGCCAGCGCTGGCATCTACCGCGGACCCGTG < 41bp 0.541070261503331 0.745674088621827 NA NA prediction 0.409207654236991 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73051242 chr10:73051241 synonymous SNV . 0 20 hm7G_associated_SNPs_33575 0 0 0 0 1 UNC5B chr10:73051189 3'AG 73051189 Downstream 53bp 30822 chr19 44605038 44605038 1 + C T PAAD 44605039 + 44605019 44605059 41 TGCTCAGAGGAAGCTGTATCGAGATGTGATGCTGGAGAACT TGCTCAGAGGAAGCTGTATTGAGATGTGATGCTGGAGAACT < 41bp 0.511902442549789 0.716505351548986 NA NA prediction 0.409205817998394 Functional Gain - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44605039 chr19:44605038 stopgain 0.857 0 20 hm7G_associated_SNPs_33576 0 0 1 0 2 ZNF224 chr19:44604954 3'AG 44604954 Downstream 85bp 30823 chr19 44605038 44605038 1 + C T PAAD 44605039 + 44605019 44605059 41 TGCTCAGAGGAAGCTGTATCGAGATGTGATGCTGGAGAACT TGCTCAGAGGAAGCTGTATTGAGATGTGATGCTGGAGAACT < 41bp 0.511902442549789 0.716505351548986 NA NA prediction 0.409205817998394 Functional Gain - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44605039 chr19:44605038 stopgain 0.857 0 20 hm7G_associated_SNPs_33576 0 0 1 0 2 ZNF224 chr19:44605080 5'GT 44605080 Upstream 43bp 30824 chr14 105212676 105212676 1 + G A SKCM 105212677 + 105212657 105212697 41 GGGAGGACCTGCCCCCACAGGCCCAGAACTACATCCGCTTT GGGAGGACCTGCCCCCACAAGCCCAGAACTACATCCGCTTT < 41bp 0.551049011790366 0.755651463959722 NA NA prediction 0.409204904338711 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105212677 chr14:105212676 synonymous SNV . 0 20 hm7G_associated_SNPs_33577 0 0 0 0 1 ADSSL1 chr14:105212722 5'GT 105212722 Upstream 47bp 30825 chr17 57046996 57046996 1 + C T COAD 57046997 + 57046977 57047017 41 CCTCCACGTTAACTTAGTCCGCCAGGAGATGTTCCCCCATG CCTCCACGTTAACTTAGTCTGCCAGGAGATGTTCCCCCATG < 41bp 0.488065437839051 0.704601274910238 NA NA prediction 0.409202549820476 Functional Gain - PPM1E ENSG00000175175 CDS Human protein_coding chr17:57046997 chr17:57046996 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_33578 0 0 0 0 2 PPM1E chr17:57046900 3'AG 57046900 Downstream 97bp 30826 chr17 57046996 57046996 1 + C T COAD 57046997 + 57046977 57047017 41 CCTCCACGTTAACTTAGTCCGCCAGGAGATGTTCCCCCATG CCTCCACGTTAACTTAGTCTGCCAGGAGATGTTCCCCCATG < 41bp 0.488065437839051 0.704601274910238 NA NA prediction 0.409202549820476 Functional Gain - PPM1E ENSG00000175175 CDS Human protein_coding chr17:57046997 chr17:57046996 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_33578 0 0 0 0 2 PPM1E chr17:57047088 5'GT 57047088 Upstream 93bp 30827 chr15 91493834 91493834 1 + C T STAD 91493835 + 91493815 91493855 41 CAAACCTGGCTGGGATCAGCGAGAGGCTCCGGTAAGGTCCC CAAACCTGGCTGGGATCAGTGAGAGGCTCCGGTAAGGTCCC < 41bp 0.500698952659817 0.705299073091497 NA NA prediction 0.40920024086336 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91493835 chr15:91493834 synonymous SNV . 0 20 hm7G_associated_SNPs_33579 0 0 1 0 1 UNC45A chr15:91493845 5'GT 91493845 Upstream 12bp 30828 chr11 581559 581559 1 + C T PRAD 581560 + 581540 581580 41 GTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCGG GTGGCCCGGAGCCCAGGGCTGGATGGACACCCACAGGTCGG < 41bp 0.514087079911795 0.718682792867495 NA NA prediction 0.409191425911401 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581560 chr11:581559 nonsynonymous SNV 0.019 2 20 hm7G_associated_SNPs_33581 0 0 1 0 3 PHRF1 chr11:581492 3'AG 581492 Downstream 68bp 30829 chr11 581559 581559 1 + C T PRAD 581560 + 581540 581580 41 GTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCGG GTGGCCCGGAGCCCAGGGCTGGATGGACACCCACAGGTCGG < 41bp 0.514087079911795 0.718682792867495 NA NA prediction 0.409191425911401 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581560 chr11:581559 nonsynonymous SNV 0.019 2 20 hm7G_associated_SNPs_33581 0 0 1 0 3 PHRF1 chr11:581597 5'GT 581597 Upstream 39bp 30830 chr11 581559 581559 1 + C T PRAD 581560 + 581540 581580 41 GTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCGG GTGGCCCGGAGCCCAGGGCTGGATGGACACCCACAGGTCGG < 41bp 0.514087079911795 0.718682792867495 NA NA prediction 0.409191425911401 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:581560 chr11:581559 nonsynonymous SNV 0.019 2 20 hm7G_associated_SNPs_33581 0 0 1 0 3 PHRF1 chr11:581606 5'GT 581606 Upstream 48bp 30831 chr12 3662861 3662861 1 + G A LUAD 3662862 + 3662842 3662882 41 ACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACAGT ACTCAGAGAAGATCATTAAAGCCAACCACTTGGACAACAGT < 41bp 0.518587303222244 0.723182849541925 NA NA prediction 0.409191092639362 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3662862 chr12:3662861 synonymous SNV . 0 20 hm7G_associated_SNPs_33582 0 0 0 1 2 PRMT8 chr12:3662817 3'AG 3662817 Downstream 45bp 30832 chr12 3662861 3662861 1 + G A LUAD 3662862 + 3662842 3662882 41 ACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACAGT ACTCAGAGAAGATCATTAAAGCCAACCACTTGGACAACAGT < 41bp 0.518587303222244 0.723182849541925 NA NA prediction 0.409191092639362 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3662862 chr12:3662861 synonymous SNV . 0 20 hm7G_associated_SNPs_33582 0 0 0 1 2 PRMT8 chr12:3662880 5'GT 3662880 Upstream 20bp 30833 chr19 41086527 41086527 1 + C T LUSC 41086528 + 41086508 41086548 41 GTGGACACCATAATTGGATCGCTGTGGCCTATACCCAGTTT GTGGACACCATAATTGGATTGCTGTGGCCTATACCCAGTTT < 41bp 0.532623698127622 0.737216580497586 NA NA prediction 0.409185764739928 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41086528 chr19:41086527 synonymous SNV . 0 20 hm7G_associated_SNPs_33583 0 0 1 0 2 SHKBP1 chr19:41086472 3'AG 41086472 Downstream 56bp 30834 chr19 41086527 41086527 1 + C T LUSC 41086528 + 41086508 41086548 41 GTGGACACCATAATTGGATCGCTGTGGCCTATACCCAGTTT GTGGACACCATAATTGGATTGCTGTGGCCTATACCCAGTTT < 41bp 0.532623698127622 0.737216580497586 NA NA prediction 0.409185764739928 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41086528 chr19:41086527 synonymous SNV . 0 20 hm7G_associated_SNPs_33583 0 0 1 0 2 SHKBP1 chr19:41086562 5'GT 41086562 Upstream 36bp 30835 chr15 42820617 42820617 1 + C T UCEC 42820618 + 42820598 42820638 41 CAGTGGTGGATACATTAAACGGTATGCCAACTCCTCCTGAT CAGTGGTGGATACATTAAATGGTATGCCAACTCCTCCTGAT < 41bp 0.517462977200958 0.722055263676605 NA NA prediction 0.409184572951294 Functional Gain - SNAP23 ENSG00000092531 CDS Human protein_coding chr15:42820618 chr15:42820617 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_33584 0 0 1 0 1 SNAP23 chr15:42820618 5'GT 42820618 Upstream 2bp 30836 chr1 45190863 45190863 1 + C T COAD 45190864 + 45190844 45190884 41 ATTCAGGCGGACATCTTGGCGGCCAACACAGTCAATGTTAC ATTCAGGCGGACATCTTGGTGGCCAACACAGTCAATGTTAC < 41bp 0.521550407152716 0.726141634622514 NA NA prediction 0.409182454939597 Functional Gain - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45190864 chr1:45190863 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_33586 0 0 0 0 2 C1orf228 chr1:45190808 3'AG 45190808 Downstream 56bp 30837 chr1 45190863 45190863 1 + C T COAD 45190864 + 45190844 45190884 41 ATTCAGGCGGACATCTTGGCGGCCAACACAGTCAATGTTAC ATTCAGGCGGACATCTTGGTGGCCAACACAGTCAATGTTAC < 41bp 0.521550407152716 0.726141634622514 NA NA prediction 0.409182454939597 Functional Gain - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45190864 chr1:45190863 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_33586 0 0 0 0 2 C1orf228 chr1:45190889 5'GT 45190889 Upstream 27bp 30838 chr1 202245515 202245515 1 + C T CESC 202245516 + 202245496 202245536 41 TCCGCCACCTCTGGCTGGACGACAATGCACTCACGGAGATC TCCGCCACCTCTGGCTGGATGACAATGCACTCACGGAGATC < 41bp 0.496213835007351 0.704591078093535 NA NA prediction 0.409182156187071 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202245516 chr1:202245515 synonymous SNV . 0 20 hm7G_associated_SNPs_33587 0 0 0 2 1 LGR6 chr1:202245434 3'AG 202245434 Downstream 82bp 30839 chr19 48337742 48337742 1 + C T HNSC 48337743 + 48337723 48337763 41 GGCCCCACTATTCTGTCAACGCCTTGGCCCTAAGTGGCCCC GGCCCCACTATTCTGTCAATGCCTTGGCCCTAAGTGGCCCC < 41bp 0.528304625028567 0.732893127965253 NA NA prediction 0.409177005873371 Functional Gain - CRX ENSG00000105392;ENSG00000259009 CDS Human protein_coding chr19:48337743 chr19:48337742 synonymous SNV . 0 20 hm7G_associated_SNPs_33588 0 0 0 0 2 CRX chr19:48337666 3'AG 48337666 Downstream 77bp 30840 chr19 48337742 48337742 1 + C T HNSC 48337743 + 48337723 48337763 41 GGCCCCACTATTCTGTCAACGCCTTGGCCCTAAGTGGCCCC GGCCCCACTATTCTGTCAATGCCTTGGCCCTAAGTGGCCCC < 41bp 0.528304625028567 0.732893127965253 NA NA prediction 0.409177005873371 Functional Gain - CRX ENSG00000105392;ENSG00000259009 CDS Human other chr19:48337743 chr19:48337742 synonymous SNV . 0 20 hm7G_associated_SNPs_33588 0 0 0 0 2 CRX chr19:48337800 5'GT 48337800 Upstream 59bp 30841 chr6 151140851 151140851 1 + C T UCEC 151140852 + 151140832 151140872 41 TACAGTCCTGAGGGAGGGACGAAAGCACTGTTCGGCTCTAA TACAGTCCTGAGGGAGGGATGAAAGCACTGTTCGGCTCTAA < 41bp 0.487856727628653 0.704585081167554 NA NA prediction 0.409170162335108 Functional Gain - PLEKHG1 ENSG00000120278 CDS Human protein_coding chr6:151140852 chr6:151140851 nonsynonymous SNV 0.065 0 20 hm7G_associated_SNPs_33591 0 0 0 0 2 PLEKHG1 chr6:151140815 3'AG 151140815 Downstream 37bp 30842 chr6 151140851 151140851 1 + C T UCEC 151140852 + 151140832 151140872 41 TACAGTCCTGAGGGAGGGACGAAAGCACTGTTCGGCTCTAA TACAGTCCTGAGGGAGGGATGAAAGCACTGTTCGGCTCTAA < 41bp 0.487856727628653 0.704585081167554 NA NA prediction 0.409170162335108 Functional Gain - PLEKHG1 ENSG00000120278 CDS Human protein_coding chr6:151140852 chr6:151140851 nonsynonymous SNV 0.065 0 20 hm7G_associated_SNPs_33591 0 0 0 0 2 PLEKHG1 chr6:151140910 5'GT 151140910 Upstream 60bp 30843 chr7 143018908 143018908 1 + G A rs147317366 143018909 + 143018889 143018929 41 AGGTTGTCGCCCTGACTGCGGGCCTGGGCAGTGGCATCCCC AGGTTGTCGCCCTGACTGCAGGCCTGGGCAGTGGCATCCCC < 41bp 0.559369714380888 0.763953787399933 NA NA prediction 0.40916814603809 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143018909 chr7:143018908 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33592 2 0 0 0 1 CLCN1 chr7:143018941 5'GT 143018941 Upstream 34bp 30844 chr10 104233430 104233430 1 + G T LUSC 104233431 + 104233411 104233451 41 GGCTCTTCCTGCTCAAGCTGGGACTTAGCCTGCTCATGTTG GGCTCTTCCTGCTCAAGCTTGGACTTAGCCTGCTCATGTTG < 41bp 0.342979581802583 0.704583457920215 NA NA prediction 0.409166915840429 Functional Gain - MFSD13A ENSG00000138111 CDS Human protein_coding chr10:104233431 chr10:104233430 synonymous SNV . 0 20 hm7G_associated_SNPs_33593 0 0 1 0 1 MFSD13A chr10:104233498 5'GT 104233498 Upstream 69bp 30845 chr3 49750004 49750004 1 + C T UCEC 49750005 + 49749985 49750025 41 CTCTCTTTGCCTTCATGCCCGAGTTCTACCTGAGCGTGGCC CTCTCTTTGCCTTCATGCCTGAGTTCTACCTGAGCGTGGCC < 41bp 0.539829363889894 0.744412046898182 NA NA prediction 0.409165366016576 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49750005 chr3:49750004 synonymous SNV . 0 20 hm7G_associated_SNPs_33594 0 0 0 1 2 RNF123 chr3:49749912 3'AG 49749912 Downstream 93bp 30846 chr3 49750004 49750004 1 + C T UCEC 49750005 + 49749985 49750025 41 CTCTCTTTGCCTTCATGCCCGAGTTCTACCTGAGCGTGGCC CTCTCTTTGCCTTCATGCCTGAGTTCTACCTGAGCGTGGCC < 41bp 0.539829363889894 0.744412046898182 NA NA prediction 0.409165366016576 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49750005 chr3:49750004 synonymous SNV . 0 20 hm7G_associated_SNPs_33594 0 0 0 1 2 RNF123 chr3:49750089 5'GT 49750089 Upstream 86bp 30847 chr20 36488339 36488339 1 + C T STAD 36488340 + 36488320 36488360 41 AGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCCGG AGATCATCGACAATGACACTGAGGAGGAGTTCTACCTCCGG < 41bp 0.50264160167286 0.707223514603744 NA NA prediction 0.409163825861766 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488340 chr20:36488339 synonymous SNV . 0 20 hm7G_associated_SNPs_33595 0 0 1 6 2 CTNNBL1 chr20:36488301 3'AG 36488301 Downstream 39bp 30848 chr20 36488339 36488339 1 + C T STAD 36488340 + 36488320 36488360 41 AGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCCGG AGATCATCGACAATGACACTGAGGAGGAGTTCTACCTCCGG < 41bp 0.50264160167286 0.707223514603744 NA NA prediction 0.409163825861766 Functional Gain - CTNNBL1 ENSG00000132792 CDS Human protein_coding chr20:36488340 chr20:36488339 synonymous SNV . 0 20 hm7G_associated_SNPs_33595 0 0 1 6 2 CTNNBL1 chr20:36488438 5'GT 36488438 Upstream 100bp 30849 chr3 47039982 47039982 1 + C T UCEC 47039983 + 47039963 47040003 41 GTACATGTCCAGCATAGTTCGGGAGCACAGACAGAAGCTGC GTACATGTCCAGCATAGTTTGGGAGCACAGACAGAAGCTGC < 41bp 0.518188824331176 0.722769475930719 NA NA prediction 0.409161303199086 Functional Gain - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47039983 chr3:47039982 nonsynonymous SNV 0.957 2 20 hm7G_associated_SNPs_33597 0 0 1 0 2 NBEAL2 chr3:47039953 3'AG 47039953 Downstream 30bp 30850 chr3 47039982 47039982 1 + C T UCEC 47039983 + 47039963 47040003 41 GTACATGTCCAGCATAGTTCGGGAGCACAGACAGAAGCTGC GTACATGTCCAGCATAGTTTGGGAGCACAGACAGAAGCTGC < 41bp 0.518188824331176 0.722769475930719 NA NA prediction 0.409161303199086 Functional Gain - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47039983 chr3:47039982 nonsynonymous SNV 0.957 2 20 hm7G_associated_SNPs_33597 0 0 1 0 2 NBEAL2 chr3:47040055 5'GT 47040055 Upstream 74bp 30851 chr19 42794013 42794013 1 + C T UCEC 42794014 + 42793994 42794034 41 CCTCAGCTGACGATGGCTTCGGCACCACTGACATTGATCTC CCTCAGCTGACGATGGCTTTGGCACCACTGACATTGATCTC < 41bp 0.534786161340412 0.739364732228159 NA NA prediction 0.409157141775494 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42794014 chr19:42794013 synonymous SNV . 0 20 hm7G_associated_SNPs_33599 0 0 1 0 2 CIC chr19:42794000 3'AG 42794000 Downstream 14bp 30852 chr19 42794013 42794013 1 + C T UCEC 42794014 + 42793994 42794034 41 CCTCAGCTGACGATGGCTTCGGCACCACTGACATTGATCTC CCTCAGCTGACGATGGCTTTGGCACCACTGACATTGATCTC < 41bp 0.534786161340412 0.739364732228159 NA NA prediction 0.409157141775494 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42794014 chr19:42794013 synonymous SNV . 0 20 hm7G_associated_SNPs_33599 0 0 1 0 2 CIC chr19:42794103 5'GT 42794103 Upstream 91bp 30853 chr11 120180150 120180150 1 + C T UCEC 120180151 + 120180131 120180171 41 TAGAACCCAAAACCCAGCTCGGAGGAGATCTCCATGATTGC TAGAACCCAAAACCCAGCTTGGAGGAGATCTCCATGATTGC < 41bp 0.529798631176421 0.734376273899013 NA NA prediction 0.409155285445184 Functional Gain - POU2F3 ENSG00000137709 CDS Human protein_coding chr11:120180151 chr11:120180150 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_33601 0 0 0 0 1 POU2F3 chr11:120180134 3'AG 120180134 Downstream 17bp 30854 chr17 18167120 18167120 1 + G A LUAD 18167121 + 18167101 18167141 41 AGGCTGCTGGCCTTCGAGCGGGACCGTGTGACCATCCCAGC AGGCTGCTGGCCTTCGAGCAGGACCGTGTGACCATCCCAGC < 41bp 0.55284791646922 0.757419669408337 NA NA prediction 0.409143505878235 Functional Gain - MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18167121 chr17:18167120 nonsynonymous SNV 0.157 0 20 hm7G_associated_SNPs_33603 0 0 0 0 2 MIEF2 chr17:18167024 3'AG 18167024 Downstream 97bp 30855 chr17 18167120 18167120 1 + G A LUAD 18167121 + 18167101 18167141 41 AGGCTGCTGGCCTTCGAGCGGGACCGTGTGACCATCCCAGC AGGCTGCTGGCCTTCGAGCAGGACCGTGTGACCATCCCAGC < 41bp 0.55284791646922 0.757419669408337 NA NA prediction 0.409143505878235 Functional Gain - MIEF2 ENSG00000177427 CDS Human protein_coding chr17:18167121 chr17:18167120 nonsynonymous SNV 0.157 0 20 hm7G_associated_SNPs_33603 0 0 0 0 2 MIEF2 chr17:18167098 3'AG 18167098 Downstream 23bp 30856 chr19 48879425 48879425 1 + G A LIHC 48879426 + 48879406 48879446 41 TCCTGGATGAGGGTGGCATGGTGCTGACCACCCTCCCCTTG TCCTGGATGAGGGTGGCATAGTGCTGACCACCCTCCCCTTG < 41bp 0.544428697036189 0.748998990290783 NA NA prediction 0.409140586509186 Functional Gain - SYNGR4 ENSG00000105467 CDS Human protein_coding chr19:48879426 chr19:48879425 nonsynonymous SNV 0.799 1 20 hm7G_associated_SNPs_33606 0 0 0 0 1 SYNGR4 chr19:48879342 3'AG 48879342 Downstream 84bp 30857 chr11 34129833 34129833 1 + C T UCEC 34129834 + 34129814 34129854 41 TGAGAATGGAGTAGCTGAGCGGCAAAGATCTCTCTTTGTTG TGAGAATGGAGTAGCTGAGTGGCAAAGATCTCTCTTTGTTG < 41bp 0.500374595972539 0.704943873213377 NA NA prediction 0.409138554481676 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129834 chr11:34129833 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_33608 0 0 1 0 2 NAT10 chr11:34129758 3'AG 34129758 Downstream 76bp 30858 chr11 34129833 34129833 1 + C T UCEC 34129834 + 34129814 34129854 41 TGAGAATGGAGTAGCTGAGCGGCAAAGATCTCTCTTTGTTG TGAGAATGGAGTAGCTGAGTGGCAAAGATCTCTCTTTGTTG < 41bp 0.500374595972539 0.704943873213377 NA NA prediction 0.409138554481676 Functional Gain - NAT10 ENSG00000135372 CDS Human protein_coding chr11:34129834 chr11:34129833 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_33608 0 0 1 0 2 NAT10 chr11:34129880 5'GT 34129880 Upstream 48bp 30859 chrX 1748723 1748723 1 + C T UCEC 1748724 + 1748704 1748744 41 TGCATGCCAGGTCCGAGGGCGAGCGGCTACAGTTCATGCAA TGCATGCCAGGTCCGAGGGTGAGCGGCTACAGTTCATGCAA < 41bp 0.496944181304854 0.704566973741852 NA NA prediction 0.409133947483705 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1748724 chrX:1748723 synonymous SNV . 0 20 hm7G_associated_SNPs_33611 0 0 0 0 1 ASMT chrX:1748714 3'AG 1748714 Downstream 10bp 30860 chr15 41227195 41227195 1 + G A STAD 41227196 + 41227176 41227216 41 CGACTCCCCCTGCTTCAATGGGGGCTCCTGCCGGGAGCGCA CGACTCCCCCTGCTTCAATAGGGGCTCCTGCCGGGAGCGCA < 41bp 0.555692393569685 0.760258424063031 NA NA prediction 0.409132060986693 Functional Gain - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41227196 chr15:41227195 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_33614 0 0 0 0 1 DLL4 chr15:41227096 3'AG 41227096 Downstream 100bp 30861 chr16 50335099 50335099 1 + C T ESCA 50335100 + 50335080 50335120 41 CCTCAAGGAGATGAACATCCGCACCTACCTGGTCATCGACC CCTCAAGGAGATGAACATCTGCACCTACCTGGTCATCGACC < 41bp 0.490124624663206 0.704565299959024 NA NA prediction 0.409130599918049 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50335100 chr16:50335099 nonsynonymous SNV 0.971 2 20 hm7G_associated_SNPs_33615 0 0 1 0 1 ADCY7 chr16:50335125 5'GT 50335125 Upstream 27bp 30862 chr3 126135240 126135240 1 + C T BLCA 126135241 + 126135221 126135261 41 GGCTAAGCACACCAGCCTGCGGCGGCAGCTGCAGCTGGAGG GGCTAAGCACACCAGCCTGTGGCGGCAGCTGCAGCTGGAGG < 41bp 0.53078464036497 0.735349726916989 NA NA prediction 0.409130173104038 Functional Gain - CFAP100 ENSG00000163885 CDS Human protein_coding chr3:126135241 chr3:126135240 nonsynonymous SNV 0.058 3 20 hm7G_associated_SNPs_33616 0 0 0 0 1 CFAP100 chr3:126135159 3'AG 126135159 Downstream 82bp 30863 chr8 24193084 24193084 1 + C T COAD 24193085 + 24193065 24193105 41 ATGGCTTCCCTTGCCATCACGGGAAGGGCCACTGCTTGATG ATGGCTTCCCTTGCCATCATGGGAAGGGCCACTGCTTGATG < 41bp 0.525059912194173 0.729623333153077 NA NA prediction 0.409126841917808 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24193085 chr8:24193084 synonymous SNV . 0 20 hm7G_associated_SNPs_33617 0 0 0 0 1 ADAM28 chr8:24193154 5'GT 24193154 Upstream 71bp 30864 chr6 26444240 26444240 1 + C T UCEC 26444241 + 26444221 26444261 41 TGGCCATGGTGGGTGAAGACGCTGATCTGCCCTGTCACCTG TGGCCATGGTGGGTGAAGATGCTGATCTGCCCTGTCACCTG < 41bp 0.525110067566309 0.729672589375482 NA NA prediction 0.409125043618346 Functional Gain - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26444241 chr6:26444240 synonymous SNV . 0 20 hm7G_associated_SNPs_33619 0 0 0 0 1 BTN3A3 chr6:26444185 3'AG 26444185 Downstream 56bp 30865 chr2 201527602 201527602 1 + G T OV 201527603 + 201527583 201527623 41 ATGAGTCAGACATGAACTGGGAGAAAGGCGAAGGCCAGCCC ATGAGTCAGACATGAACTGTGAGAAAGGCGAAGGCCAGCCC < 41bp 0.706277313253909 0.910839646867928 NA NA prediction 0.409124667228038 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201527603 chr2:201527602 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_33620 0 0 0 0 2 AOX1 chr2:201527578 3'AG 201527578 Downstream 25bp 30866 chr2 201527602 201527602 1 + G T OV 201527603 + 201527583 201527623 41 ATGAGTCAGACATGAACTGGGAGAAAGGCGAAGGCCAGCCC ATGAGTCAGACATGAACTGTGAGAAAGGCGAAGGCCAGCCC < 41bp 0.706277313253909 0.910839646867928 NA NA prediction 0.409124667228038 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201527603 chr2:201527602 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_33620 0 0 0 0 2 AOX1 chr2:201527692 5'GT 201527692 Upstream 91bp 30867 chr1 236899013 236899013 1 + C T STAD 236899014 + 236898994 236899034 41 TACCACGCTTTTGCGGGCGCGGAGCAGGTACTCAACACTTG TACCACGCTTTTGCGGGCGTGGAGCAGGTACTCAACACTTG < 41bp 0.520455623154555 0.725016984464069 NA NA prediction 0.40912272261903 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236899014 chr1:236899013 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33621 0 0 0 0 2 ACTN2 chr1:236898935 3'AG 236898935 Downstream 79bp 30868 chr1 236899013 236899013 1 + C T STAD 236899014 + 236898994 236899034 41 TACCACGCTTTTGCGGGCGCGGAGCAGGTACTCAACACTTG TACCACGCTTTTGCGGGCGTGGAGCAGGTACTCAACACTTG < 41bp 0.520455623154555 0.725016984464069 NA NA prediction 0.40912272261903 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236899014 chr1:236899013 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33621 0 0 0 0 2 ACTN2 chr1:236899020 5'GT 236899020 Upstream 8bp 30869 chr9 140707883 140707883 1 + C T STAD 140707884 + 140707864 140707904 41 TCCCCATCCCCTGTGTCAACGCCGTGGACAGCGAGCCATGC TCCCCATCCCCTGTGTCAATGCCGTGGACAGCGAGCCATGC < 41bp 0.52626547106108 0.730826503127332 NA NA prediction 0.409122064132503 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140707884 chr9:140707883 synonymous SNV . 0 20 hm7G_associated_SNPs_33622 1 0 1 0 2 EHMT1 chr9:140707838 3'AG 140707838 Downstream 46bp 30870 chr9 140707883 140707883 1 + C T STAD 140707884 + 140707864 140707904 41 TCCCCATCCCCTGTGTCAACGCCGTGGACAGCGAGCCATGC TCCCCATCCCCTGTGTCAATGCCGTGGACAGCGAGCCATGC < 41bp 0.52626547106108 0.730826503127332 NA NA prediction 0.409122064132503 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140707884 chr9:140707883 synonymous SNV . 0 20 hm7G_associated_SNPs_33622 1 0 1 0 2 EHMT1 chr9:140707982 5'GT 140707982 Upstream 100bp 30871 chr11 64129160 64129160 1 + C T UCEC 64129161 + 64129141 64129181 41 TTGCTCTTCGAGCTGCTGACGGGGGCCTCGCCCTTCACCCT TTGCTCTTCGAGCTGCTGATGGGGGCCTCGCCCTTCACCCT < 41bp 0.490558467638461 0.704560349421084 NA NA prediction 0.409120698842169 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64129161 chr11:64129160 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_33623 0 0 1 0 2 RPS6KA4 chr11:64129114 3'AG 64129114 Downstream 47bp 30872 chr11 64129160 64129160 1 + C T UCEC 64129161 + 64129141 64129181 41 TTGCTCTTCGAGCTGCTGACGGGGGCCTCGCCCTTCACCCT TTGCTCTTCGAGCTGCTGATGGGGGCCTCGCCCTTCACCCT < 41bp 0.490558467638461 0.704560349421084 NA NA prediction 0.409120698842169 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64129161 chr11:64129160 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_33623 0 0 1 0 2 RPS6KA4 chr11:64129217 5'GT 64129217 Upstream 58bp 30873 chr4 17826619 17826619 1 + C T COAD 17826620 + 17826600 17826640 41 ATTATCTCAGAGATTCGGGCGCCCATTGTTACTGTTGGTGT ATTATCTCAGAGATTCGGGTGCCCATTGTTACTGTTGGTGT < 41bp 0.495616016130652 0.704559468113481 NA NA prediction 0.409118936226961 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17826620 chr4:17826619 nonsynonymous SNV 0.932 1 20 hm7G_associated_SNPs_33624 0 0 1 0 2 NCAPG chr4:17826591 3'AG 17826591 Downstream 29bp 30874 chr4 17826619 17826619 1 + C T COAD 17826620 + 17826600 17826640 41 ATTATCTCAGAGATTCGGGCGCCCATTGTTACTGTTGGTGT ATTATCTCAGAGATTCGGGTGCCCATTGTTACTGTTGGTGT < 41bp 0.495616016130652 0.704559468113481 NA NA prediction 0.409118936226961 Functional Gain - NCAPG ENSG00000109805 CDS Human protein_coding chr4:17826620 chr4:17826619 nonsynonymous SNV 0.932 1 20 hm7G_associated_SNPs_33624 0 0 1 0 2 NCAPG chr4:17826680 5'GT 17826680 Upstream 62bp 30875 chr17 25965319 25965319 1 + G A BRCA 25965320 + 25965300 25965340 41 TTCTGGGACTATTCAAGGAGGTCTCCAGGACGGACTTCAGA TTCTGGGACTATTCAAGGAAGTCTCCAGGACGGACTTCAGA < 41bp 0.491079728973881 0.704558217198431 NA NA prediction 0.409116434396862 Functional Gain - LGALS9 ENSG00000168961 CDS Human protein_coding chr17:25965320 chr17:25965319 nonsynonymous SNV 0.029 3 20 hm7G_associated_SNPs_33625 0 0 0 0 2 LGALS9 chr17:25965289 3'AG 25965289 Downstream 31bp 30876 chr17 25965319 25965319 1 + G A BRCA 25965320 + 25965300 25965340 41 TTCTGGGACTATTCAAGGAGGTCTCCAGGACGGACTTCAGA TTCTGGGACTATTCAAGGAAGTCTCCAGGACGGACTTCAGA < 41bp 0.491079728973881 0.704558217198431 NA NA prediction 0.409116434396862 Functional Gain - LGALS9 ENSG00000168961 CDS Human protein_coding chr17:25965320 chr17:25965319 nonsynonymous SNV 0.029 3 20 hm7G_associated_SNPs_33625 0 0 0 0 2 LGALS9 chr17:25965380 5'GT 25965380 Upstream 62bp 30877 chr6 160864687 160864687 1 + G T LUAD 160864688 + 160864668 160864708 41 CGGAGTTTCGCTCTGTTCAGGTCTGTGTGATTTTGGGGGAA CGGAGTTTCGCTCTGTTCATGTCTGTGTGATTTTGGGGGAA < 41bp 0.377841584609739 0.70455773760673 NA NA prediction 0.409115475213461 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160864688 chr6:160864687 nonsynonymous SNV 0.896 2 20 hm7G_associated_SNPs_33626 0 0 0 0 2 SLC22A3 chr6:160864662 3'AG 160864662 Downstream 26bp 30878 chr6 160864687 160864687 1 + G T LUAD 160864688 + 160864668 160864708 41 CGGAGTTTCGCTCTGTTCAGGTCTGTGTGATTTTGGGGGAA CGGAGTTTCGCTCTGTTCATGTCTGTGTGATTTTGGGGGAA < 41bp 0.377841584609739 0.70455773760673 NA NA prediction 0.409115475213461 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160864688 chr6:160864687 nonsynonymous SNV 0.896 2 20 hm7G_associated_SNPs_33626 0 0 0 0 2 SLC22A3 chr6:160864774 5'GT 160864774 Upstream 88bp 30879 chr9 100070318 100070318 1 + C T STAD 100070319 + 100070299 100070339 41 TTCCTGGACGACGGCTTCCCGGCAGGGGCATCCAGCCAGCG TTCCTGGACGACGGCTTCCTGGCAGGGGCATCCAGCCAGCG < 41bp 0.490780684940247 0.704556671755644 NA NA prediction 0.409113343511288 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100070319 chr9:100070318 synonymous SNV . 0 20 hm7G_associated_SNPs_33627 0 0 0 0 2 CCDC180 chr9:100070265 3'AG 100070265 Downstream 54bp 30880 chr9 100070318 100070318 1 + C T STAD 100070319 + 100070299 100070339 41 TTCCTGGACGACGGCTTCCCGGCAGGGGCATCCAGCCAGCG TTCCTGGACGACGGCTTCCTGGCAGGGGCATCCAGCCAGCG < 41bp 0.490780684940247 0.704556671755644 NA NA prediction 0.409113343511288 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100070319 chr9:100070318 synonymous SNV . 0 20 hm7G_associated_SNPs_33627 0 0 0 0 2 CCDC180 chr9:100070414 5'GT 100070414 Upstream 97bp 30881 chr9 124544646 124544646 1 + C T STAD 124544647 + 124544627 124544667 41 GTTGGATGCCGCCAATGCCCGCCTCATGAGTGCCCTGACCC GTTGGATGCCGCCAATGCCTGCCTCATGAGTGCCCTGACCC < 41bp 0.498157921527757 0.704554428203303 NA NA prediction 0.409108856406607 Functional Gain - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124544647 chr9:124544646 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33629 0 0 1 0 2 DAB2IP chr9:124544610 3'AG 124544610 Downstream 37bp 30882 chr9 124544646 124544646 1 + C T STAD 124544647 + 124544627 124544667 41 GTTGGATGCCGCCAATGCCCGCCTCATGAGTGCCCTGACCC GTTGGATGCCGCCAATGCCTGCCTCATGAGTGCCCTGACCC < 41bp 0.498157921527757 0.704554428203303 NA NA prediction 0.409108856406607 Functional Gain - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124544647 chr9:124544646 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33629 0 0 1 0 2 DAB2IP chr9:124544680 5'GT 124544680 Upstream 35bp 30883 chr7 73768303 73768303 1 + G A UCEC 73768304 + 73768284 73768324 41 GGAGCTGGACGAGCCCCTTGGGAAGAATGATGGGGCGGTGG GGAGCTGGACGAGCCCCTTAGGAAGAATGATGGGGCGGTGG < 41bp 0.592804838959458 0.797358448875069 NA NA prediction 0.409107219831222 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73768304 chr7:73768303 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_33630 0 0 1 0 2 CLIP2 chr7:73768210 3'AG 73768210 Downstream 94bp 30884 chr7 73768303 73768303 1 + G A UCEC 73768304 + 73768284 73768324 41 GGAGCTGGACGAGCCCCTTGGGAAGAATGATGGGGCGGTGG GGAGCTGGACGAGCCCCTTAGGAAGAATGATGGGGCGGTGG < 41bp 0.592804838959458 0.797358448875069 NA NA prediction 0.409107219831222 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73768304 chr7:73768303 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_33630 0 0 1 0 2 CLIP2 chr7:73768334 5'GT 73768334 Upstream 32bp 30885 chr5 126758397 126758397 1 + C T UCEC 126758398 + 126758378 126758418 41 TGAACTGTGCTGAGCGCTGCGACTGCAGCCACGCAGATGGC TGAACTGTGCTGAGCGCTGTGACTGCAGCCACGCAGATGGC < 41bp 0.553020755601151 0.757574299995254 NA NA prediction 0.409107088788206 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126758398 chr5:126758397 synonymous SNV . 0 20 hm7G_associated_SNPs_33631 1 0 0 0 2 MEGF10 chr5:126758362 3'AG 126758362 Downstream 36bp 30886 chr5 126758397 126758397 1 + C T UCEC 126758398 + 126758378 126758418 41 TGAACTGTGCTGAGCGCTGCGACTGCAGCCACGCAGATGGC TGAACTGTGCTGAGCGCTGTGACTGCAGCCACGCAGATGGC < 41bp 0.553020755601151 0.757574299995254 NA NA prediction 0.409107088788206 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126758398 chr5:126758397 synonymous SNV . 0 20 hm7G_associated_SNPs_33631 1 0 0 0 2 MEGF10 chr5:126758464 5'GT 126758464 Upstream 68bp 30887 chr3 129810956 129810956 1 + G A SKCM 129810957 + 129810937 129810977 41 CCTTCAGCTCAGAACCTGAGGACCCAGACACAGAGCGGTCG CCTTCAGCTCAGAACCTGAAGACCCAGACACAGAGCGGTCG < 41bp 0.527004687433677 0.731557355172756 NA NA prediction 0.409105335478159 Functional Gain - ALG1L2 ENSG00000251287 ncRNA_exonic Human protein_coding chr3:129810957 chr3:129810956 . . 0 20 hm7G_associated_SNPs_33632 0 0 0 0 1 ALG1L2 chr3:129810944 3'AG 129810944 Downstream 13bp 30888 chr22 24447360 24447360 1 + C T DLBC 24447361 + 24447341 24447381 41 AGATGAGGCCTTGGGGCTGCGAAAAAAGAGGCAAGCGCTGA AGATGAGGCCTTGGGGCTGTGAAAAAAGAGGCAAGCGCTGA < 41bp 0.524640087908129 0.729190133993315 NA NA prediction 0.409100092170373 Functional Gain - CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24447361 chr22:24447360 stopgain 0.985 1 20 hm7G_associated_SNPs_33633 0 0 1 0 2 CABIN1 chr22:24447287 3'AG 24447287 Downstream 74bp 30889 chr22 24447360 24447360 1 + C T DLBC 24447361 + 24447341 24447381 41 AGATGAGGCCTTGGGGCTGCGAAAAAAGAGGCAAGCGCTGA AGATGAGGCCTTGGGGCTGTGAAAAAAGAGGCAAGCGCTGA < 41bp 0.524640087908129 0.729190133993315 NA NA prediction 0.409100092170373 Functional Gain - CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24447361 chr22:24447360 stopgain 0.985 1 20 hm7G_associated_SNPs_33633 0 0 1 0 2 CABIN1 chr22:24447436 5'GT 24447436 Upstream 77bp 30890 chr8 2063806 2063806 1 + C T OV 2063807 + 2063787 2063827 41 TATTGAGATGGTGATGGATCGATTTAGTATTGAAAATGAGG TATTGAGATGGTGATGGATTGATTTAGTATTGAAAATGAGG < 41bp 0.506471605117025 0.711021184138519 NA NA prediction 0.409099158042987 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2063807 chr8:2063806 stopgain 0.551 0 20 hm7G_associated_SNPs_33634 0 0 0 0 2 MYOM2 chr8:2063752 3'AG 2063752 Downstream 55bp 30891 chr8 2063806 2063806 1 + C T OV 2063807 + 2063787 2063827 41 TATTGAGATGGTGATGGATCGATTTAGTATTGAAAATGAGG TATTGAGATGGTGATGGATTGATTTAGTATTGAAAATGAGG < 41bp 0.506471605117025 0.711021184138519 NA NA prediction 0.409099158042987 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2063807 chr8:2063806 stopgain 0.551 0 20 hm7G_associated_SNPs_33634 0 0 0 0 2 MYOM2 chr8:2063896 5'GT 2063896 Upstream 91bp 30892 chr19 18885765 18885765 1 + C T BLCA 18885766 + 18885746 18885786 41 TACTATGAGCAGCAGATGGCGGCCAGGCAGGCCAATGCTCT TACTATGAGCAGCAGATGGTGGCCAGGCAGGCCAATGCTCT < 41bp 0.4931786303897 0.70454768849457 NA NA prediction 0.409095376989141 Functional Gain - CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18885766 chr19:18885765 nonsynonymous SNV 0.974 0 20 hm7G_associated_SNPs_33636 0 0 0 0 2 CRTC1 chr19:18885710 3'AG 18885710 Downstream 56bp 30893 chr19 18885765 18885765 1 + C T BLCA 18885766 + 18885746 18885786 41 TACTATGAGCAGCAGATGGCGGCCAGGCAGGCCAATGCTCT TACTATGAGCAGCAGATGGTGGCCAGGCAGGCCAATGCTCT < 41bp 0.4931786303897 0.70454768849457 NA NA prediction 0.409095376989141 Functional Gain - CRTC1 ENSG00000105662 CDS Human protein_coding chr19:18885766 chr19:18885765 nonsynonymous SNV 0.974 0 20 hm7G_associated_SNPs_33636 0 0 0 0 2 CRTC1 chr19:18885796 5'GT 18885796 Upstream 32bp 30894 chr10 35896588 35896588 1 + G A SKCM 35896589 + 35896569 35896609 41 CCGTCTACCAGGACGAGCAGGAGAGGTTTGTCTGCAACACG CCGTCTACCAGGACGAGCAAGAGAGGTTTGTCTGCAACACG < 41bp 0.519026549668049 0.723574221499582 NA NA prediction 0.409095343663065 Functional Gain - GJD4 ENSG00000177291 CDS Human protein_coding chr10:35896589 chr10:35896588 synonymous SNV . 0 20 hm7G_associated_SNPs_33637 0 0 0 0 1 GJD4 chr10:35896506 3'AG 35896506 Downstream 83bp 30895 chr11 601669 601669 1 + C T ESCA 601670 + 601650 601690 41 ATCTAAGAAACGCCAACATCGAGTGAAGAAGAGAAGAGGGA ATCTAAGAAACGCCAACATTGAGTGAAGAAGAGAAGAGGGA < 41bp 0.523662428033471 0.728209675934957 NA NA prediction 0.409094495802973 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:601670 chr11:601669 stopgain 0.003 0 20 hm7G_associated_SNPs_33639 0 0 1 0 2 PHRF1 chr11:601574 3'AG 601574 Downstream 96bp 30896 chr11 601669 601669 1 + C T ESCA 601670 + 601650 601690 41 ATCTAAGAAACGCCAACATCGAGTGAAGAAGAGAAGAGGGA ATCTAAGAAACGCCAACATTGAGTGAAGAAGAGAAGAGGGA < 41bp 0.523662428033471 0.728209675934957 NA NA prediction 0.409094495802973 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:601670 chr11:601669 stopgain 0.003 0 20 hm7G_associated_SNPs_33639 0 0 1 0 2 PHRF1 chr11:601701 5'GT 601701 Upstream 33bp 30897 chr12 122398578 122398578 1 + C T UCEC 122398579 + 122398559 122398599 41 AGCAAGACTTCGCTCTCATCGCAAAAGCATTCGAAGTCTCC AGCAAGACTTCGCTCTCATTGCAAAAGCATTCGAAGTCTCC < 41bp 0.537626450817608 0.742173439203392 NA NA prediction 0.409093976771568 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122398579 chr12:122398578 nonsynonymous SNV 0.945 1 20 hm7G_associated_SNPs_33640 0 0 1 0 2 WDR66 chr12:122398491 3'AG 122398491 Downstream 88bp 30898 chr12 122398578 122398578 1 + C T UCEC 122398579 + 122398559 122398599 41 AGCAAGACTTCGCTCTCATCGCAAAAGCATTCGAAGTCTCC AGCAAGACTTCGCTCTCATTGCAAAAGCATTCGAAGTCTCC < 41bp 0.537626450817608 0.742173439203392 NA NA prediction 0.409093976771568 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122398579 chr12:122398578 nonsynonymous SNV 0.945 1 20 hm7G_associated_SNPs_33640 0 0 1 0 2 WDR66 chr12:122398664 5'GT 122398664 Upstream 87bp 30899 chr11 44228363 44228363 1 + C T UCEC 44228364 + 44228344 44228384 41 TTCTCTCTGGCCCAAAATCCGGGTTCCATTAAAAGTTGTGA TTCTCTCTGGCCCAAAATCTGGGTTCCATTAAAAGTTGTGA < 41bp 0.517960012801906 0.722505752820597 NA NA prediction 0.409091480037382 Functional Gain - EXT2 ENSG00000151348 CDS Human protein_coding chr11:44228364 chr11:44228363 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_33641 0 0 0 0 1 EXT2 chr11:44228343 3'AG 44228343 Downstream 21bp 30900 chrX 2947405 2947405 1 + G T CESC 2947406 + 2947386 2947426 41 CGGTCAGGTGGCATCAGAAGGACTGTAAGTATGAAGGCTGT CGGTCAGGTGGCATCAGAATGACTGTAAGTATGAAGGCTGT < 41bp 0.701589796006064 0.906133596775468 NA NA prediction 0.409087601538809 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2947406 chrX:2947405 nonsynonymous SNV 0.865 2 20 hm7G_associated_SNPs_33642 0 0 0 0 1 ARSH chrX:2947409 5'GT 2947409 Upstream 5bp 30901 chr11 597398 597398 1 + C T rs142383152 597399 + 597379 597419 41 TGGTGGTTCTTCCCAGATGCGGGTCCCGTGAGTGAGGAGGA TGGTGGTTCTTCCCAGATGTGGGTCCCGTGAGTGAGGAGGA < 41bp 0.507480438206345 0.71202403646265 NA NA prediction 0.409087196512611 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:597399 chr11:597398 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_33644 0 0 1 0 1 PHRF1 chr11:597395 3'AG 597395 Downstream 4bp 30902 chr11 62543398 62543398 1 + C T rs144825291 62543399 + 62543379 62543419 41 TATCGTCTGAGAGAGGCCACGCAGGTACACTCCCCTCACCC TATCGTCTGAGAGAGGCCATGCAGGTACACTCCCCTCACCC < 41bp 0.510601347021843 0.715143725405241 NA NA prediction 0.409084756766796 Functional Gain - TAF6L ENSG00000162227 CDS Human protein_coding chr11:62543399 chr11:62543398 nonsynonymous SNV 0.965 1 20 hm7G_associated_SNPs_33645 0 0 1 0 1 TAF6L chr11:62543402 5'GT 62543402 Upstream 5bp 30903 chr12 51634221 51634221 1 + C T GBM 51634222 + 51634202 51634242 41 CTCAGGCTCCACCCTATACCGATGCTCCACCTGCCTACTCA CTCAGGCTCCACCCTATACTGATGCTCCACCTGCCTACTCA < 41bp 0.548302886416043 0.752843493342454 NA NA prediction 0.409081213852822 Functional Gain - DAZAP2 ENSG00000183283 CDS Human protein_coding chr12:51634222 chr12:51634221 synonymous SNV . 0 20 hm7G_associated_SNPs_33646 0 0 1 0 2 DAZAP2 chr12:51634127 3'AG 51634127 Downstream 95bp 30904 chr12 51634221 51634221 1 + C T GBM 51634222 + 51634202 51634242 41 CTCAGGCTCCACCCTATACCGATGCTCCACCTGCCTACTCA CTCAGGCTCCACCCTATACTGATGCTCCACCTGCCTACTCA < 41bp 0.548302886416043 0.752843493342454 NA NA prediction 0.409081213852822 Functional Gain - DAZAP2 ENSG00000183283 CDS Human protein_coding chr12:51634222 chr12:51634221 synonymous SNV . 0 20 hm7G_associated_SNPs_33646 0 0 1 0 2 DAZAP2 chr12:51634245 5'GT 51634245 Upstream 25bp 30905 chr20 54940160 54940160 1 + G A UCEC 54940161 + 54940141 54940181 41 AGGACCCCAGCCAGGCCACGGGGACAACAGGCAGCAGCGTC AGGACCCCAGCCAGGCCACAGGGACAACAGGCAGCAGCGTC < 41bp 0.525771048421762 0.730306787059893 NA NA prediction 0.409071477276264 Functional Gain - FAM210B ENSG00000124098 CDS Human protein_coding chr20:54940161 chr20:54940160 synonymous SNV . 0 20 hm7G_associated_SNPs_33648 0 0 1 0 1 FAM210B chr20:54940143 3'AG 54940143 Downstream 18bp 30906 chrX 9866302 9866302 1 + C T READ 9866303 + 9866283 9866323 41 AGAGCTTCCCTCCGCAGTCCGGGCCGAGGAGGGACAGTCCA AGAGCTTCCCTCCGCAGTCTGGGCCGAGGAGGGACAGTCCA < 41bp 0.51887100287195 0.72340624225849 NA NA prediction 0.409070478773081 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9866303 chrX:9866302 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_33649 0 0 0 0 2 SHROOM2 chrX:9866230 3'AG 9866230 Downstream 73bp 30907 chrX 9866302 9866302 1 + C T READ 9866303 + 9866283 9866323 41 AGAGCTTCCCTCCGCAGTCCGGGCCGAGGAGGGACAGTCCA AGAGCTTCCCTCCGCAGTCTGGGCCGAGGAGGGACAGTCCA < 41bp 0.51887100287195 0.72340624225849 NA NA prediction 0.409070478773081 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9866303 chrX:9866302 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_33649 0 0 0 0 2 SHROOM2 chrX:9866330 5'GT 9866330 Upstream 29bp 30908 chrX 152825328 152825328 1 + C T GBM 152825329 + 152825309 152825349 41 CGACAAGCCCCTCATCTCCCGCACCATGATGAAGAACATTC CGACAAGCCCCTCATCTCCTGCACCATGATGAAGAACATTC < 41bp 0.486841391628569 0.704534802111129 NA NA prediction 0.409069604222257 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152825329 chrX:152825328 nonsynonymous SNV 0.774 5 20 hm7G_associated_SNPs_33650 0 0 0 0 1 ATP2B3 chrX:152825400 5'GT 152825400 Upstream 73bp 30909 chr3 183910606 183910606 1 + G A LUAD 183910607 + 183910587 183910627 41 CTGCAGGAATCTGAAGATTGGCTATTTCAGCCAGCACCATG CTGCAGGAATCTGAAGATTAGCTATTTCAGCCAGCACCATG < 41bp 0.493411886639713 0.704532152595884 NA NA prediction 0.409064305191767 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183910607 chr3:183910606 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_33654 0 0 1 0 2 ABCF3 chr3:183910593 3'AG 183910593 Downstream 14bp 30910 chr3 183910606 183910606 1 + G A LUAD 183910607 + 183910587 183910627 41 CTGCAGGAATCTGAAGATTGGCTATTTCAGCCAGCACCATG CTGCAGGAATCTGAAGATTAGCTATTTCAGCCAGCACCATG < 41bp 0.493411886639713 0.704532152595884 NA NA prediction 0.409064305191767 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183910607 chr3:183910606 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_33654 0 0 1 0 2 ABCF3 chr3:183910684 5'GT 183910684 Upstream 79bp 30911 chr11 71507129 71507129 1 + G A rs145777517 71507130 + 71507110 71507150 41 CGGAGGCTGGCTGCCTGCCGGGAGCACCAGCGGGCTCCTCA CGGAGGCTGGCTGCCTGCCAGGAGCACCAGCGGGCTCCTCA < 41bp 0.573187601331974 0.777719610415936 NA NA prediction 0.409064018167923 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507130 chr11:71507129 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_33655 0 0 0 0 2 FAM86C1 chr11:71507063 3'AG 71507063 Downstream 67bp 30912 chr11 71507129 71507129 1 + G A rs145777517 71507130 + 71507110 71507150 41 CGGAGGCTGGCTGCCTGCCGGGAGCACCAGCGGGCTCCTCA CGGAGGCTGGCTGCCTGCCAGGAGCACCAGCGGGCTCCTCA < 41bp 0.573187601331974 0.777719610415936 NA NA prediction 0.409064018167923 Functional Gain - FAM86C1 ENSG00000158483 CDS Human protein_coding chr11:71507130 chr11:71507129 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_33655 0 0 0 0 2 FAM86C1 chr11:71507212 5'GT 71507212 Upstream 84bp 30913 chr14 65511143 65511143 1 + C T UCEC 65511144 + 65511124 65511164 41 GCTCCTGCCCCTGCTCCACCGCGCACTGCACGCCCAAGGTG GCTCCTGCCCCTGCTCCACTGCGCACTGCACGCCCAAGGTG < 41bp 0.520204783652284 0.724736630242414 NA NA prediction 0.409063693180261 Functional Gain - CHURC1-FNTB;FNTB ENSG00000125954;ENSG00000257365 CDS Human other chr14:65511144 chr14:65511143 nonsynonymous SNV 0.883 1 20 hm7G_associated_SNPs_33656 0 0 1 0 1 CHURC1-FNTB;FNTB chr14:65511161 5'GT 65511161 Upstream 19bp 30914 chr4 111398161 111398161 1 + C T COAD 111398162 + 111398142 111398182 41 AGTTCGCCGGCTGGCTGAACGGCTCCCTCGTGGGATTTTAT AGTTCGCCGGCTGGCTGAATGGCTCCCTCGTGGGATTTTAT < 41bp 0.526793537180788 0.731321457410351 NA NA prediction 0.409055840459126 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111398162 chr4:111398161 synonymous SNV . 0 20 hm7G_associated_SNPs_33659 0 0 0 0 1 ENPEP chr4:111398214 5'GT 111398214 Upstream 54bp 30915 chr15 74174028 74174028 1 + C T STAD 74174029 + 74174009 74174049 41 GAAGCCTGGAAATTCCTCACGGGCTACTTCTCATGGCAGAG GAAGCCTGGAAATTCCTCATGGGCTACTTCTCATGGCAGAG < 41bp 0.524510496887611 0.729038019740916 NA NA prediction 0.40905504570661 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74174029 chr15:74174028 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_33660 0 0 0 0 1 TBC1D21 chr15:74174088 5'GT 74174088 Upstream 61bp 30916 chr12 57858552 57858552 1 + C T SARC 57858553 + 57858533 57858573 41 GCCAGCCTGGACCTGCAGACGGTTATCCGCACCTCACCCAG GCCAGCCTGGACCTGCAGATGGTTATCCGCACCTCACCCAG < 41bp 0.540415817295848 0.744943015157391 NA NA prediction 0.409054395723085 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57858553 chr12:57858552 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_33661 0 0 0 0 2 GLI1 chr12:57858456 3'AG 57858456 Downstream 97bp 30917 chr12 57858552 57858552 1 + C T SARC 57858553 + 57858533 57858573 41 GCCAGCCTGGACCTGCAGACGGTTATCCGCACCTCACCCAG GCCAGCCTGGACCTGCAGATGGTTATCCGCACCTCACCCAG < 41bp 0.540415817295848 0.744943015157391 NA NA prediction 0.409054395723085 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57858553 chr12:57858552 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_33661 0 0 0 0 2 GLI1 chr12:57858486 3'AG 57858486 Downstream 67bp 30918 chr12 130832682 130832682 1 + C T BLCA 130832683 + 130832663 130832703 41 GAATTTGCAACAAATTGGACGAAATTATTATAACCCAAATG GAATTTGCAACAAATTGGATGAAATTATTATAACCCAAATG < 41bp 0.502138629539393 0.706665542768919 NA NA prediction 0.40905382645905 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130832683 chr12:130832682 stopgain 1.000 1 20 hm7G_associated_SNPs_33662 0 0 0 0 2 PIWIL1 chr12:130832648 3'AG 130832648 Downstream 35bp 30919 chr12 130832682 130832682 1 + C T BLCA 130832683 + 130832663 130832703 41 GAATTTGCAACAAATTGGACGAAATTATTATAACCCAAATG GAATTTGCAACAAATTGGATGAAATTATTATAACCCAAATG < 41bp 0.502138629539393 0.706665542768919 NA NA prediction 0.40905382645905 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130832683 chr12:130832682 stopgain 1.000 1 20 hm7G_associated_SNPs_33662 0 0 0 0 2 PIWIL1 chr12:130832728 5'GT 130832728 Upstream 47bp 30920 chr2 66739324 66739324 1 + C T UCEC 66739325 + 66739305 66739345 41 CTTCCCCCAGCACAGGTGACGATGATGACCCTGATAAGGAC CTTCCCCCAGCACAGGTGATGATGATGACCCTGATAAGGAC < 41bp 0.520019491648817 0.724545821878673 NA NA prediction 0.409052660459712 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66739325 chr2:66739324 synonymous SNV . 0 20 hm7G_associated_SNPs_33663 0 0 1 0 1 MEIS1 chr2:66739281 3'AG 66739281 Downstream 44bp 30921 chr22 24580171 24580171 1 + C T SARC 24580172 + 24580152 24580192 41 AGACGCGTTGGCAATACTACGGCACCGCCAACACCTCAGGC AGACGCGTTGGCAATACTATGGCACCGCCAACACCTCAGGC < 41bp 0.536997916798817 0.74152395374085 NA NA prediction 0.409052073884066 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24580172 chr22:24580171 synonymous SNV . 0 20 hm7G_associated_SNPs_33664 0 0 0 0 1 SUSD2 chr22:24580104 3'AG 24580104 Downstream 68bp 30922 chr7 893201 893201 1 + C T OV 893202 + 893182 893222 41 TGGACCAGATGGAAGGCGGCGCTGCCGGGCCGTCAGCTTCG TGGACCAGATGGAAGGCGGTGCTGCCGGGCCGTCAGCTTCG < 41bp 0.507995557010267 0.712519099357096 NA NA prediction 0.409047084693659 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:893202 chr7:893201 synonymous SNV . 0 20 hm7G_associated_SNPs_33665 0 0 1 0 2 SUN1 chr7:893222 5'GT 893222 Upstream 22bp 30923 chr7 893201 893201 1 + C T OV 893202 + 893182 893222 41 TGGACCAGATGGAAGGCGGCGCTGCCGGGCCGTCAGCTTCG TGGACCAGATGGAAGGCGGTGCTGCCGGGCCGTCAGCTTCG < 41bp 0.507995557010267 0.712519099357096 NA NA prediction 0.409047084693659 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:893202 chr7:893201 synonymous SNV . 0 20 hm7G_associated_SNPs_33665 0 0 1 0 2 SUN1 chr7:893255 5'GT 893255 Upstream 55bp 30924 chr19 58046563 58046563 1 + G A SARC 58046564 + 58046544 58046584 41 CTTCTCCCAGGAGGAGTGGGGCCTCCTTGATGAAGCTCAAA CTTCTCCCAGGAGGAGTGGAGCCTCCTTGATGAAGCTCAAA < 41bp 0.526119390490245 0.730642807244057 NA NA prediction 0.409046833507623 Functional Gain - ZNF549 ENSG00000121406 CDS Human protein_coding chr19:58046564 chr19:58046563 nonsynonymous SNV 0.822 0 20 hm7G_associated_SNPs_33666 0 0 1 0 2 ZNF549 chr19:58046512 3'AG 58046512 Downstream 52bp 30925 chr19 58046563 58046563 1 + G A SARC 58046564 + 58046544 58046584 41 CTTCTCCCAGGAGGAGTGGGGCCTCCTTGATGAAGCTCAAA CTTCTCCCAGGAGGAGTGGAGCCTCCTTGATGAAGCTCAAA < 41bp 0.526119390490245 0.730642807244057 NA NA prediction 0.409046833507623 Functional Gain - ZNF549 ENSG00000121406 CDS Human other chr19:58046564 chr19:58046563 nonsynonymous SNV 0.822 0 20 hm7G_associated_SNPs_33666 0 0 1 0 2 ZNF549 chr19:58046638 5'GT 58046638 Upstream 76bp 30926 chr16 85667547 85667547 1 + C T BLCA 85667548 + 85667528 85667568 41 CATGAGCCCAAGTCCCCTTCGCTAGGGATGCTTTCCACCGC CATGAGCCCAAGTCCCCTTTGCTAGGGATGCTTTCCACCGC < 41bp 0.492239620169619 0.70452331903226 NA NA prediction 0.409046638064519 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85667548 chr16:85667547 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_33667 0 0 1 0 1 GSE1 chr16:85667520 3'AG 85667520 Downstream 28bp 30927 chr8 69136816 69136816 1 + C T STAD 69136817 + 69136797 69136837 41 GCAAGAGTTCAGAACACAGCGAAGAATTTGGGAGTCAGAGA GCAAGAGTTCAGAACACAGTGAAGAATTTGGGAGTCAGAGA < 41bp 0.512064834127148 0.716587901337991 NA NA prediction 0.409046134421687 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69136817 chr8:69136816 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_33668 0 0 0 0 2 PREX2 chr8:69136794 3'AG 69136794 Downstream 23bp 30928 chr8 69136816 69136816 1 + C T STAD 69136817 + 69136797 69136837 41 GCAAGAGTTCAGAACACAGCGAAGAATTTGGGAGTCAGAGA GCAAGAGTTCAGAACACAGTGAAGAATTTGGGAGTCAGAGA < 41bp 0.512064834127148 0.716587901337991 NA NA prediction 0.409046134421687 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69136817 chr8:69136816 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_33668 0 0 0 0 2 PREX2 chr8:69136861 5'GT 69136861 Upstream 46bp 30929 chr19 50209590 50209590 1 + C T UCEC 50209591 + 50209571 50209611 41 TGTCACTGGATGCTGAGCCCGCGGGGCTCACCAGGGAGGAC TGTCACTGGATGCTGAGCCTGCGGGGCTCACCAGGGAGGAC < 41bp 0.527913042164034 0.732435487228504 NA NA prediction 0.409044890128942 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50209591 chr19:50209590 synonymous SNV . 0 20 hm7G_associated_SNPs_33670 0 0 0 0 1 CPT1C chr19:50209670 5'GT 50209670 Upstream 81bp 30930 chr19 54407995 54407995 1 + G A SKCM 54407996 + 54407976 54408016 41 GCCGTGGCCATCTGCAAGGGGGTGAGAGCCCCCTGACTCCC GCCGTGGCCATCTGCAAGGAGGTGAGAGCCCCCTGACTCCC < 41bp 0.485481713365929 0.704520404265008 NA NA prediction 0.409040808530015 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54407996 chr19:54407995 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_33671 0 0 0 0 1 PRKCG chr19:54407996 5'GT 54407996 Upstream 2bp 30931 chr22 31796681 31796681 1 + C T LGG 31796682 + 31796662 31796702 41 TCGTCTTGCTAAGCTTCGTCGAGAACTCATTACTCCAAAGG TCGTCTTGCTAAGCTTCGTTGAGAACTCATTACTCCAAAGG < 41bp 0.539086131695267 0.74360538739209 NA NA prediction 0.409038511393645 Functional Gain - DRG1 ENSG00000185721 CDS Human protein_coding chr22:31796682 chr22:31796681 stopgain 0.987 1 20 hm7G_associated_SNPs_33672 0 0 1 0 2 DRG1 chr22:31796606 3'AG 31796606 Downstream 76bp 30932 chr22 31796681 31796681 1 + C T LGG 31796682 + 31796662 31796702 41 TCGTCTTGCTAAGCTTCGTCGAGAACTCATTACTCCAAAGG TCGTCTTGCTAAGCTTCGTTGAGAACTCATTACTCCAAAGG < 41bp 0.539086131695267 0.74360538739209 NA NA prediction 0.409038511393645 Functional Gain - DRG1 ENSG00000185721 CDS Human protein_coding chr22:31796682 chr22:31796681 stopgain 0.987 1 20 hm7G_associated_SNPs_33672 0 0 1 0 2 DRG1 chr22:31796729 5'GT 31796729 Upstream 49bp 30933 chrX 22095653 22095653 1 + C T UCEC 22095654 + 22095634 22095674 41 CCTACGGCATTCACCTTTCCGCTGGCCCGTGCTTGAATCTA CCTACGGCATTCACCTTTCTGCTGGCCCGTGCTTGAATCTA < 41bp 0.53901052245311 0.743529356779934 NA NA prediction 0.409037668653649 Functional Gain - PHEX ENSG00000102174 CDS Human protein_coding chrX:22095654 chrX:22095653 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_33673 0 0 0 0 1 PHEX chrX:22095594 3'AG 22095594 Downstream 60bp 30934 chr5 96245370 96245370 1 + G A UCEC 96245371 + 96245351 96245391 41 GGGACAGGATGCTCCGCTCGGCTCTCTTGAAGCTGGCCTGT GGGACAGGATGCTCCGCTCAGCTCTCTTGAAGCTGGCCTGT < 41bp 0.488836764622938 0.704518529108432 NA NA prediction 0.409037058216864 Functional Gain - ERAP2 ENSG00000164308 CDS Human protein_coding chr5:96245371 chr5:96245370 synonymous SNV . 0 20 hm7G_associated_SNPs_33674 0 0 0 0 1 ERAP2 chr5:96245468 5'GT 96245468 Upstream 99bp 30935 chr17 28361332 28361332 1 + C T GBM 28361333 + 28361313 28361353 41 CCACTCTGCAGATGAATTTCGGGAGGTCATAAAAGCTGACA CCACTCTGCAGATGAATTTTGGGAGGTCATAAAAGCTGACA < 41bp 0.519631568459991 0.724149240448021 NA NA prediction 0.409035343976059 Functional Gain - EFCAB5 ENSG00000176927 CDS Human protein_coding chr17:28361333 chr17:28361332 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_33675 0 0 0 0 2 EFCAB5 chr17:28361248 3'AG 28361248 Downstream 85bp 30936 chr17 28361332 28361332 1 + C T GBM 28361333 + 28361313 28361353 41 CCACTCTGCAGATGAATTTCGGGAGGTCATAAAAGCTGACA CCACTCTGCAGATGAATTTTGGGAGGTCATAAAAGCTGACA < 41bp 0.519631568459991 0.724149240448021 NA NA prediction 0.409035343976059 Functional Gain - EFCAB5 ENSG00000176927 CDS Human protein_coding chr17:28361333 chr17:28361332 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_33675 0 0 0 0 2 EFCAB5 chr17:28361403 5'GT 28361403 Upstream 72bp 30937 chr20 31606872 31606872 1 + C T UCEC 31606873 + 31606853 31606893 41 GGGTGCTGATTTCAGAGGTCGGATGACAACCTGCTGAACAC GGGTGCTGATTTCAGAGGTTGGATGACAACCTGCTGAACAC < 41bp 0.501846631148046 0.70636061914817 NA NA prediction 0.40902797600025 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606873 chr20:31606872 nonsynonymous SNV 0.222 3 20 hm7G_associated_SNPs_33676 0 0 0 0 2 BPIFB2 chr20:31606868 3'AG 31606868 Downstream 5bp 30938 chr20 31606872 31606872 1 + C T UCEC 31606873 + 31606853 31606893 41 GGGTGCTGATTTCAGAGGTCGGATGACAACCTGCTGAACAC GGGTGCTGATTTCAGAGGTTGGATGACAACCTGCTGAACAC < 41bp 0.501846631148046 0.70636061914817 NA NA prediction 0.40902797600025 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31606873 chr20:31606872 nonsynonymous SNV 0.222 3 20 hm7G_associated_SNPs_33676 0 0 0 0 2 BPIFB2 chr20:31606921 5'GT 31606921 Upstream 50bp 30939 chr9 126134566 126134566 1 + C T rs201242880 126134567 + 126134547 126134587 41 CCCAGCAGCTGTGGTGTCCCGGCCAGCCCTGTCTCCCACCT CCCAGCAGCTGTGGTGTCCTGGCCAGCCCTGTCTCCCACCT < 41bp 0.520858162852778 0.725372127523051 NA NA prediction 0.409027929340546 Functional Gain - CRB2 ENSG00000148204 CDS Human protein_coding chr9:126134567 chr9:126134566 synonymous SNV . 0 20 hm7G_associated_SNPs_33677 0 0 0 0 1 CRB2 chr9:126134621 5'GT 126134621 Upstream 56bp 30940 chr17 9580183 9580183 1 + C T UCEC 9580184 + 9580164 9580204 41 TGGTTGCAGAGGAAGGAGGCGTCCCTGCAGATGAGGTGTGA TGGTTGCAGAGGAAGGAGGTGTCCCTGCAGATGAGGTGTGA < 41bp 0.525642843407073 0.730156152890671 NA NA prediction 0.409026618967197 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9580184 chr17:9580183 synonymous SNV . 0 20 hm7G_associated_SNPs_33678 0 0 0 0 1 USP43 chr17:9580198 5'GT 9580198 Upstream 16bp 30941 chr3 57875801 57875801 1 + C T UCEC 57875802 + 57875782 57875822 41 GAAGGGCATCTAACCAAAGCGGTAGAAGAAACAAAGCTTTC GAAGGGCATCTAACCAAAGTGGTAGAAGAAACAAAGCTTTC < 41bp 0.510775982159299 0.715288621706768 NA NA prediction 0.409025279094937 Functional Gain - SLMAP ENSG00000163681 CDS Human protein_coding chr3:57875802 chr3:57875801 nonsynonymous SNV 0.619 0 20 hm7G_associated_SNPs_33679 0 0 1 0 1 SLMAP chr3:57875827 5'GT 57875827 Upstream 27bp 30942 chr12 51122443 51122443 1 + C T UCEC 51122444 + 51122424 51122464 41 TACTGTGGACTTGGCTTCGCGCTCTGGTGTCTCTGCAGGTA TACTGTGGACTTGGCTTCGTGCTCTGGTGTCTCTGCAGGTA < 41bp 0.497191450141425 0.704510071267151 NA NA prediction 0.409020142534303 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51122444 chr12:51122443 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33681 0 0 1 0 1 DIP2B chr12:51122461 5'GT 51122461 Upstream 19bp 30943 chr17 7604850 7604850 1 + C T SKCM 7604851 + 7604831 7604871 41 AGAGCTCCGGGCTTCCTTTCGCGCCTACAACCACCTGGTAG AGAGCTCCGGGCTTCCTTTTGCGCCTACAACCACCTGGTAG < 41bp 0.490922195036101 0.704510008706156 NA NA prediction 0.409020017412311 Functional Gain - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604851 chr17:7604850 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_33682 0 0 1 0 2 WRAP53 chr17:7604777 3'AG 7604777 Downstream 74bp 30944 chr17 7604850 7604850 1 + C T SKCM 7604851 + 7604831 7604871 41 AGAGCTCCGGGCTTCCTTTCGCGCCTACAACCACCTGGTAG AGAGCTCCGGGCTTCCTTTTGCGCCTACAACCACCTGGTAG < 41bp 0.490922195036101 0.704510008706156 NA NA prediction 0.409020017412311 Functional Gain - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7604851 chr17:7604850 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_33682 0 0 1 0 2 WRAP53 chr17:7604867 5'GT 7604867 Upstream 18bp 30945 chr2 15747341 15747341 1 + C T STAD 15747342 + 15747322 15747362 41 AAGTTTCTCCCCAATGCTCCGAAAGCTCTCATTGTTGAACC AAGTTTCTCCCCAATGCTCTGAAAGCTCTCATTGTTGAACC < 41bp 0.53384999030039 0.738357250930054 NA NA prediction 0.409014521259328 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15747342 chr2:15747341 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_33683 0 0 1 0 2 DDX1 chr2:15747299 3'AG 15747299 Downstream 43bp 30946 chr2 15747341 15747341 1 + C T STAD 15747342 + 15747322 15747362 41 AAGTTTCTCCCCAATGCTCCGAAAGCTCTCATTGTTGAACC AAGTTTCTCCCCAATGCTCTGAAAGCTCTCATTGTTGAACC < 41bp 0.53384999030039 0.738357250930054 NA NA prediction 0.409014521259328 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15747342 chr2:15747341 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_33683 0 0 1 0 2 DDX1 chr2:15747437 5'GT 15747437 Upstream 97bp 30947 chr5 179992926 179992926 1 + G T UCEC 179992927 + 179992907 179992947 41 ACTGGGACTACAGGAAAAAGGCCATTATTCAAGAAATCTTG ACTGGGACTACAGGAAAAATGCCATTATTCAAGAAATCTTG < 41bp 0.357693696722193 0.704507034032403 NA NA prediction 0.409014068064806 Functional Gain - CNOT6 ENSG00000113300 CDS Human protein_coding chr5:179992927 chr5:179992926 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_33684 0 0 1 0 1 CNOT6 chr5:179992977 5'GT 179992977 Upstream 52bp 30948 chr10 76737141 76737141 1 + C T CESC 76737142 + 76737122 76737162 41 TGATTGGAAACAAGGATGTCGTTACTGAAGAGGATTTGGAT TGATTGGAAACAAGGATGTTGTTACTGAAGAGGATTTGGAT < 41bp 0.509119735047686 0.713625893433586 NA NA prediction 0.409012316771798 Functional Gain - KAT6B ENSG00000156650 CDS Human protein_coding chr10:76737142 chr10:76737141 synonymous SNV . 0 20 hm7G_associated_SNPs_33686 0 0 1 0 2 KAT6B chr10:76737074 3'AG 76737074 Downstream 68bp 30949 chr10 76737141 76737141 1 + C T CESC 76737142 + 76737122 76737162 41 TGATTGGAAACAAGGATGTCGTTACTGAAGAGGATTTGGAT TGATTGGAAACAAGGATGTTGTTACTGAAGAGGATTTGGAT < 41bp 0.509119735047686 0.713625893433586 NA NA prediction 0.409012316771798 Functional Gain - KAT6B ENSG00000156650 CDS Human protein_coding chr10:76737142 chr10:76737141 synonymous SNV . 0 20 hm7G_associated_SNPs_33686 0 0 1 0 2 KAT6B chr10:76737195 5'GT 76737195 Upstream 55bp 30950 chr5 78596580 78596580 1 + C T rs12109475 78596581 + 78596561 78596601 41 GAAGAGATGGCAGCATCTGCGTACTTACAGAGAGAAGAGCT GAAGAGATGGCAGCATCTGTGTACTTACAGAGAGAAGAGCT < 41bp 0.496569070855341 0.704505688697795 NA NA prediction 0.40901137739559 Functional Gain - JMY ENSG00000152409 CDS Human protein_coding chr5:78596581 chr5:78596580 nonsynonymous SNV 0.847 0 20 hm7G_associated_SNPs_33688 0 0 1 0 1 JMY chr5:78596499 3'AG 78596499 Downstream 82bp 30951 chr15 89698693 89698693 1 + C T SKCM 89698694 + 89698674 89698714 41 CGCCCAGAAAAATGGCTATCGGTGCGCCGTGCTGAACCACC CGCCCAGAAAAATGGCTATTGGTGCGCCGTGCTGAACCACC < 41bp 0.484647035600442 0.704503141383166 NA NA prediction 0.409006282766331 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89698694 chr15:89698693 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_33690 0 0 1 0 2 ABHD2 chr15:89698598 3'AG 89698598 Downstream 96bp 30952 chr15 89698693 89698693 1 + C T SKCM 89698694 + 89698674 89698714 41 CGCCCAGAAAAATGGCTATCGGTGCGCCGTGCTGAACCACC CGCCCAGAAAAATGGCTATTGGTGCGCCGTGCTGAACCACC < 41bp 0.484647035600442 0.704503141383166 NA NA prediction 0.409006282766331 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89698694 chr15:89698693 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_33690 0 0 1 0 2 ABHD2 chr15:89698765 5'GT 89698765 Upstream 73bp 30953 chr19 18273888 18273888 1 + C T READ 18273889 + 18273869 18273909 41 TCATCAATCACTACCGCCACGAGTCTCTGGCCCAGTACAAT TCATCAATCACTACCGCCATGAGTCTCTGGCCCAGTACAAT < 41bp 0.530668832264517 0.735171293142886 NA NA prediction 0.409004921756738 Functional Gain - PIK3R2 ENSG00000105647;ENSG00000268173 CDS Human other chr19:18273889 chr19:18273888 synonymous SNV . 0 20 hm7G_associated_SNPs_33691 0 0 0 0 1 PIK3R2 chr19:18273957 5'GT 18273957 Upstream 70bp 30954 chr16 90023966 90023966 1 + G A KIRP 90023967 + 90023947 90023987 41 AGCTGCGGCAGGCGATCGAGGAGTGCAAGCAGGTGATTCTG AGCTGCGGCAGGCGATCGAAGAGTGCAAGCAGGTGATTCTG < 41bp 0.540283291811122 0.74478568660835 NA NA prediction 0.409004789594457 Functional Gain - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90023967 chr16:90023966 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33692 0 0 1 0 1 DEF8 chr16:90023949 3'AG 90023949 Downstream 18bp 30955 chr11 65387853 65387853 1 + C T UCEC 65387854 + 65387834 65387874 41 GCCTGGCTGGAGGCGGCTACGAGAACCCTGTAGGGCAGCAA GCCTGGCTGGAGGCGGCTATGAGAACCCTGTAGGGCAGCAA < 41bp 0.48650654564147 0.704496598265876 NA NA prediction 0.408993196531752 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65387854 chr11:65387853 synonymous SNV . 0 20 hm7G_associated_SNPs_33696 0 0 1 0 2 PCNX3 chr11:65387810 3'AG 65387810 Downstream 44bp 30956 chr11 65387853 65387853 1 + C T UCEC 65387854 + 65387834 65387874 41 GCCTGGCTGGAGGCGGCTACGAGAACCCTGTAGGGCAGCAA GCCTGGCTGGAGGCGGCTATGAGAACCCTGTAGGGCAGCAA < 41bp 0.48650654564147 0.704496598265876 NA NA prediction 0.408993196531752 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65387854 chr11:65387853 synonymous SNV . 0 20 hm7G_associated_SNPs_33696 0 0 1 0 2 PCNX3 chr11:65387900 5'GT 65387900 Upstream 48bp 30957 chr2 220476719 220476719 1 + G A STAD 220476720 + 220476700 220476740 41 TCTGTGGACCACCGACTCCGGCTCTTCCTGGATGTTGAGGT TCTGTGGACCACCGACTCCAGCTCTTCCTGGATGTTGAGGT < 41bp 0.554654258938591 0.759148592009198 NA NA prediction 0.408988666141213 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220476720 chr2:220476719 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_33697 0 0 1 0 2 STK11IP chr2:220476677 3'AG 220476677 Downstream 43bp 30958 chr2 220476719 220476719 1 + G A STAD 220476720 + 220476700 220476740 41 TCTGTGGACCACCGACTCCGGCTCTTCCTGGATGTTGAGGT TCTGTGGACCACCGACTCCAGCTCTTCCTGGATGTTGAGGT < 41bp 0.554654258938591 0.759148592009198 NA NA prediction 0.408988666141213 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220476720 chr2:220476719 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_33697 0 0 1 0 2 STK11IP chr2:220476780 5'GT 220476780 Upstream 62bp 30959 chr9 117002729 117002729 1 + C T CESC 117002730 + 117002710 117002750 41 CCAGGGTAAGCCTGGAGCCCGAGGCCTGCCGGGACCCCGTG CCAGGGTAAGCCTGGAGCCTGAGGCCTGCCGGGACCCCGTG < 41bp 0.517839719835113 0.72233397129318 NA NA prediction 0.408988502916132 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117002730 chr9:117002729 stopgain 0.999 0 20 hm7G_associated_SNPs_33698 0 0 1 0 1 COL27A1 chr9:117002767 5'GT 117002767 Upstream 39bp 30960 chr5 172513533 172513533 1 + C T ESCA 172513534 + 172513514 172513554 41 GCGGAATGGATCCGCCTTTCGGGGATGCCTTTCGAAGCCAC GCGGAATGGATCCGCCTTTTGGGGATGCCTTTCGAAGCCAC < 41bp 0.534573310400537 0.739067280319215 NA NA prediction 0.408987939837356 Functional Gain - CREBRF ENSG00000164463 CDS Human protein_coding chr5:172513534 chr5:172513533 synonymous SNV . 0 20 hm7G_associated_SNPs_33699 0 0 1 0 2 CREBRF chr5:172513504 3'AG 172513504 Downstream 30bp 30961 chr5 172513533 172513533 1 + C T ESCA 172513534 + 172513514 172513554 41 GCGGAATGGATCCGCCTTTCGGGGATGCCTTTCGAAGCCAC GCGGAATGGATCCGCCTTTTGGGGATGCCTTTCGAAGCCAC < 41bp 0.534573310400537 0.739067280319215 NA NA prediction 0.408987939837356 Functional Gain - CREBRF ENSG00000164463 CDS Human protein_coding chr5:172513534 chr5:172513533 synonymous SNV . 0 20 hm7G_associated_SNPs_33699 0 0 1 0 2 CREBRF chr5:172513629 5'GT 172513629 Upstream 97bp 30962 chr8 37914672 37914672 1 + G A SKCM 37914673 + 37914653 37914693 41 TGACCAAAACACCCCCAAGGGATCTGCCCACCATTCCGGGG TGACCAAAACACCCCCAAGAGATCTGCCCACCATTCCGGGG < 41bp 0.548675508016194 0.753168778014276 NA NA prediction 0.408986539996164 Functional Gain - EIF4EBP1 ENSG00000187840 CDS Human protein_coding chr8:37914673 chr8:37914672 synonymous SNV . 0 20 hm7G_associated_SNPs_33700 0 0 1 0 1 EIF4EBP1 chr8:37914599 3'AG 37914599 Downstream 74bp 30963 chr1 6111627 6111627 1 + C T UCEC 6111628 + 6111608 6111648 41 GACGTACAGCGAGAGTCTGCGGAGCGTGAGCAGCAGGTGCC GACGTACAGCGAGAGTCTGTGGAGCGTGAGCAGCAGGTGCC < 41bp 0.517836199497401 0.722328280665795 NA NA prediction 0.408984162336788 Functional Gain - KCNAB2 ENSG00000069424 CDS Human protein_coding chr1:6111628 chr1:6111627 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_33701 0 0 0 0 1 KCNAB2 chr1:6111571 3'AG 6111571 Downstream 57bp 30964 chr1 205038639 205038639 1 + G A SKCM 205038640 + 205038620 205038660 41 CCCCTCGGTGGCACCCTCAGGACTCAGCGGAGGAGGTGGAG CCCCTCGGTGGCACCCTCAAGACTCAGCGGAGGAGGTGGAG < 41bp 0.543027598567669 0.747516433590677 NA NA prediction 0.408977670046016 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205038640 chr1:205038639 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_33703 0 0 0 0 2 CNTN2 chr1:205038619 3'AG 205038619 Downstream 21bp 30965 chr1 205038639 205038639 1 + G A SKCM 205038640 + 205038620 205038660 41 CCCCTCGGTGGCACCCTCAGGACTCAGCGGAGGAGGTGGAG CCCCTCGGTGGCACCCTCAAGACTCAGCGGAGGAGGTGGAG < 41bp 0.543027598567669 0.747516433590677 NA NA prediction 0.408977670046016 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205038640 chr1:205038639 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_33703 0 0 0 0 2 CNTN2 chr1:205038689 5'GT 205038689 Upstream 51bp 30966 chr11 44931396 44931396 1 + C T rs200109095 44931397 + 44931377 44931417 41 GGGGCCTGCTCTTTCTGCTCGGCTTCCTGGGCTGCTGCGGG GGGGCCTGCTCTTTCTGCTTGGCTTCCTGGGCTGCTGCGGG < 41bp 0.543056428723795 0.74754258975814 NA NA prediction 0.408972322068691 Functional Gain - TSPAN18 ENSG00000157570 CDS Human protein_coding chr11:44931397 chr11:44931396 synonymous SNV . 0 20 hm7G_associated_SNPs_33705 0 0 0 0 1 TSPAN18 chr11:44931450 5'GT 44931450 Upstream 55bp 30967 chr21 47544808 47544808 1 + G A COAD 47544809 + 47544789 47544829 41 CCTTCCCCAGGGTGAGCCCGGCCCCCCTGGAGACCCCGGTC CCTTCCCCAGGGTGAGCCCAGCCCCCCTGGAGACCCCGGTC < 41bp 0.587888056013651 0.792374125343722 NA NA prediction 0.408972138660141 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47544809 chr21:47544808 nonsynonymous SNV 0.065 5 20 hm7G_associated_SNPs_33706 1 0 0 0 1 COL6A2 chr21:47544834 5'GT 47544834 Upstream 27bp 30968 chr12 104380777 104380777 1 + G T UCEC 104380778 + 104380758 104380798 41 TTCAGTGGCATTCCTAATGGGCAGTGGATGACCCAGTCATT TTCAGTGGCATTCCTAATGTGCAGTGGATGACCCAGTCATT < 41bp 0.685991274596272 0.890477310719578 NA NA prediction 0.408972072246614 Functional Gain - TDG ENSG00000139372 CDS Human protein_coding chr12:104380778 chr12:104380777 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33707 0 0 1 0 1 TDG chr12:104380726 3'AG 104380726 Downstream 52bp 30969 chr2 32983560 32983560 1 + C T OV 32983561 + 32983541 32983581 41 GTGTGTAGAGTGCTTCGAACGCTCGGTTAAGATTAATCCCA GTGTGTAGAGTGCTTCGAATGCTCGGTTAAGATTAATCCCA < 41bp 0.490065664791144 0.704484815250783 NA NA prediction 0.408969630501566 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32983561 chr2:32983560 nonsynonymous SNV 0.508 1 20 hm7G_associated_SNPs_33709 0 0 1 0 1 TTC27 chr2:32983586 5'GT 32983586 Upstream 27bp 30970 chr16 66974142 66974142 1 + C T STAD 66974143 + 66974123 66974163 41 AGGTGATGGTGTGGATCCACGGTGGTGCGCTTGTTTTTGGC AGGTGATGGTGTGGATCCATGGTGGTGCGCTTGTTTTTGGC < 41bp 0.509987499369154 0.714470838672848 NA NA prediction 0.408966678607387 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66974143 chr16:66974142 synonymous SNV . 0 20 hm7G_associated_SNPs_33711 0 0 1 0 1 CES2 chr16:66974125 3'AG 66974125 Downstream 18bp 30971 chr1 3670736 3670736 1 + C T CESC 3670737 + 3670717 3670757 41 CATGTCCAAAATGGAACTTCGAAGGGTCTTCCCCACGCATC CATGTCCAAAATGGAACTTTGAAGGGTCTTCCCCACGCATC < 41bp 0.497897992031181 0.704477698174923 NA NA prediction 0.408955396349846 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3670737 chr1:3670736 stopgain 0.001 0 20 hm7G_associated_SNPs_33716 0 0 0 0 1 CCDC27 chr1:3670805 5'GT 3670805 Upstream 70bp 30972 chr15 66610924 66610924 1 + C T COAD 66610925 + 66610905 66610945 41 TTACAGAATTCCCAAAATTCGAATTAGCACTCAGCAAGCAG TTACAGAATTCCCAAAATTTGAATTAGCACTCAGCAAGCAG < 41bp 0.544530878229815 0.749007318372355 NA NA prediction 0.408952880285081 Functional Gain - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66610925 chr15:66610924 stopgain 0.995 1 20 hm7G_associated_SNPs_33717 0 0 0 0 1 DIS3L chr15:66610956 5'GT 66610956 Upstream 33bp 30973 chr7 30890160 30890160 1 + C T rs74684656 30890161 + 30890141 30890181 41 CAGGGGGCCGAGAGAGAGCCGTTGTTGCACTGTAAGTGGTT CAGGGGGCCGAGAGAGAGCTGTTGTTGCACTGTAAGTGGTT < 41bp 0.511798733837151 0.716275039406251 NA NA prediction 0.4089526111382 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30890161 chr7:30890160 synonymous SNV . 0 20 hm7G_associated_SNPs_33718 0 0 0 0 2 MINDY4 chr7:30890070 3'AG 30890070 Downstream 91bp 30974 chr7 30890160 30890160 1 + C T rs74684656 30890161 + 30890141 30890181 41 CAGGGGGCCGAGAGAGAGCCGTTGTTGCACTGTAAGTGGTT CAGGGGGCCGAGAGAGAGCTGTTGTTGCACTGTAAGTGGTT < 41bp 0.511798733837151 0.716275039406251 NA NA prediction 0.4089526111382 Functional Gain - MINDY4 ENSG00000106125 CDS Human protein_coding chr7:30890161 chr7:30890160 synonymous SNV . 0 20 hm7G_associated_SNPs_33718 0 0 0 0 2 MINDY4 chr7:30890171 5'GT 30890171 Upstream 12bp 30975 chr11 119170255 119170255 1 + C T KIRC 119170256 + 119170236 119170276 41 GCCTCCAAAACCATTCCCGCGGAGAATCAACTCTGAACGGA GCCTCCAAAACCATTCCCGTGGAGAATCAACTCTGAACGGA < 41bp 0.523872976979566 0.728348724303172 NA NA prediction 0.408951494647212 Functional Gain - CBL ENSG00000110395 CDS Human protein_coding chr11:119170256 chr11:119170255 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_33719 0 0 1 0 1 CBL chr11:119170205 3'AG 119170205 Downstream 51bp 30976 chr13 98865519 98865519 1 + C T rs9300466 98865520 + 98865500 98865540 41 GGAGAAATAGAGCAGAGGCCGACCCCAGGATCACGACTGGG GGAGAAATAGAGCAGAGGCTGACCCCAGGATCACGACTGGG < 41bp 0.534558918084349 0.739034235274062 NA NA prediction 0.408950634379426 Functional Gain - FARP1 ENSG00000152767 CDS Human protein_coding chr13:98865520 chr13:98865519 nonsynonymous SNV 0.656 2 20 hm7G_associated_SNPs_33720 0 0 0 0 1 FARP1 chr13:98865474 3'AG 98865474 Downstream 46bp 30977 chr4 71063863 71063863 1 + G T HNSC 71063864 + 71063844 71063884 41 ACCGCCTCAGACACAACCAGGCCCCAGTCACGTAAGTCAGG ACCGCCTCAGACACAACCATGCCCCAGTCACGTAAGTCAGG < 41bp 0.3772123377965 0.704475282265347 NA NA prediction 0.408950564530693 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71063864 chr4:71063863 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_33721 0 0 0 0 1 ODAM chr4:71063874 5'GT 71063874 Upstream 12bp 30978 chr3 38044779 38044779 1 + C T COAD 38044780 + 38044760 38044800 41 CTGGGAGGCCCTGGGAGGCCGGGCCCCCTACCCCAGCAACA CTGGGAGGCCCTGGGAGGCTGGGCCCCCTACCCCAGCAACA < 41bp 0.541034647924699 0.745509500160029 NA NA prediction 0.40894970447066 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38044780 chr3:38044779 nonsynonymous SNV 0.790 3 20 hm7G_associated_SNPs_33722 0 0 1 0 1 VILL chr3:38044804 5'GT 38044804 Upstream 26bp 30979 chr8 28378297 28378297 1 + C T GBM 28378298 + 28378278 28378318 41 CGGGCTTACAGTGAGTGTTCGAAGCTCATGGAGATGTTTGG CGGGCTTACAGTGAGTGTTTGAAGCTCATGGAGATGTTTGG < 41bp 0.508481195062307 0.712954912562245 NA NA prediction 0.408947434999877 Functional Gain - FZD3 ENSG00000104290 CDS Human protein_coding chr8:28378298 chr8:28378297 nonsynonymous SNV 0.972 2 20 hm7G_associated_SNPs_33723 0 0 1 0 1 FZD3 chr8:28378351 5'GT 28378351 Upstream 55bp 30980 chr16 84228961 84228961 1 - G A LGG 84228960 - 84228940 84228980 41 CCAGCACAGCAGCTGCTGCCGGTGCCCAGAGCCACCAGCTT CCAGCACAGCAGCTGCTGCTGGTGCCCAGAGCCACCAGCTT < 41bp 0.500721165029834 0.705192573064624 NA NA prediction 0.40894281606958 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228960 chr16:84228961 nonsynonymous SNV 0.322 5 20 hm7G_associated_SNPs_33726 0 0 0 0 1 ADAD2 chr16:84229047 3'AG 84229047 Downstream 87bp 30981 chr5 63871635 63871635 1 + C T BLCA 63871636 + 63871616 63871656 41 GATCCATCCAGAAATCTGTCGGCTTTACATCCAGCTGCAGT GATCCATCCAGAAATCTGTTGGCTTTACATCCAGCTGCAGT < 41bp 0.536325855698591 0.740793656661317 NA NA prediction 0.408935601925452 Functional Gain - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63871636 chr5:63871635 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_33728 0 0 0 0 2 RGS7BP chr5:63871601 3'AG 63871601 Downstream 35bp 30982 chr5 63871635 63871635 1 + C T BLCA 63871636 + 63871616 63871656 41 GATCCATCCAGAAATCTGTCGGCTTTACATCCAGCTGCAGT GATCCATCCAGAAATCTGTTGGCTTTACATCCAGCTGCAGT < 41bp 0.536325855698591 0.740793656661317 NA NA prediction 0.408935601925452 Functional Gain - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63871636 chr5:63871635 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_33728 0 0 0 0 2 RGS7BP chr5:63871731 5'GT 63871731 Upstream 97bp 30983 chr9 100190781 100190781 1 + C T LGG 100190782 + 100190762 100190802 41 TCTGGTTTCAAAGATGCTACGAGCTGTTCTGCAGTCTCATA TCTGGTTTCAAAGATGCTATGAGCTGTTCTGCAGTCTCATA < 41bp 0.527971272344356 0.732434706745822 NA NA prediction 0.408926868802931 Functional Gain - TDRD7 ENSG00000196116 CDS Human protein_coding chr9:100190782 chr9:100190781 stopgain 0.968 1 20 hm7G_associated_SNPs_33729 0 0 1 0 1 TDRD7 chr9:100190742 3'AG 100190742 Downstream 40bp 30984 chr1 179561886 179561886 1 + C T READ 179561887 + 179561867 179561907 41 TGGCAACCATCTACCACTCCGAATCCTTGGGTATCGGTCCA TGGCAACCATCTACCACTCTGAATCCTTGGGTATCGGTCCA < 41bp 0.551338914888008 0.755801083220472 NA NA prediction 0.408924336664927 Functional Gain - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179561887 chr1:179561886 stopgain 0.986 0 20 hm7G_associated_SNPs_33730 0 0 0 0 1 TDRD5 chr1:179561982 5'GT 179561982 Upstream 97bp 30985 chr15 42684848 42684848 1 + G T TGCT 42684849 + 42684829 42684869 41 CTCTACAGACAATCATTCCGGTTCAGTATGAGACAAGAATG CTCTACAGACAATCATTCCTGTTCAGTATGAGACAAGAATG < 41bp 0.374522869786072 0.704461853644208 NA NA prediction 0.408923707288416 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42684849 chr15:42684848 synonymous SNV . 0 20 hm7G_associated_SNPs_33731 0 0 0 0 2 CAPN3 chr15:42684837 3'AG 42684837 Downstream 12bp 30986 chr15 42684848 42684848 1 + G T TGCT 42684849 + 42684829 42684869 41 CTCTACAGACAATCATTCCGGTTCAGTATGAGACAAGAATG CTCTACAGACAATCATTCCTGTTCAGTATGAGACAAGAATG < 41bp 0.374522869786072 0.704461853644208 NA NA prediction 0.408923707288416 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42684849 chr15:42684848 synonymous SNV . 0 20 hm7G_associated_SNPs_33731 0 0 0 0 2 CAPN3 chr15:42684920 5'GT 42684920 Upstream 73bp 30987 chr6 42819894 42819894 1 + G A rs560073193 42819895 + 42819875 42819915 41 AAGACCACAGACGGCCTGAGGCAAGCACAGATCCCTGGGCT AAGACCACAGACGGCCTGAAGCAAGCACAGATCCCTGGGCT < 41bp 0.53665649766923 0.741117463690541 NA NA prediction 0.408921932042621 Functional Gain - BICRAL ENSG00000112624 CDS Human protein_coding chr6:42819895 chr6:42819894 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33732 0 0 0 0 2 BICRAL chr6:42819830 3'AG 42819830 Downstream 65bp 30988 chr6 42819894 42819894 1 + G A rs560073193 42819895 + 42819875 42819915 41 AAGACCACAGACGGCCTGAGGCAAGCACAGATCCCTGGGCT AAGACCACAGACGGCCTGAAGCAAGCACAGATCCCTGGGCT < 41bp 0.53665649766923 0.741117463690541 NA NA prediction 0.408921932042621 Functional Gain - BICRAL ENSG00000112624 CDS Human protein_coding chr6:42819895 chr6:42819894 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33732 0 0 0 0 2 BICRAL chr6:42819935 5'GT 42819935 Upstream 42bp 30989 chr15 30926428 30926428 1 + C T COAD 30926429 + 30926409 30926449 41 GCACCTCCTTGTGATATTGCGGGACTTCTTAAGCAGTTTTT GCACCTCCTTGTGATATTGTGGGACTTCTTAAGCAGTTTTT < 41bp 0.525657358028948 0.730117860099924 NA NA prediction 0.40892100414195 Functional Gain - ARHGAP11B ENSG00000187951 CDS Human protein_coding chr15:30926429 chr15:30926428 nonsynonymous SNV 0.975 3 20 hm7G_associated_SNPs_33733 0 0 0 0 1 ARHGAP11B chr15:30926373 3'AG 30926373 Downstream 56bp 30990 chr11 9424886 9424886 1 + C T GBM 9424887 + 9424867 9424907 41 CTGCTCCAGATTACTATGTCGGAACAGCTGGATTTACCTGT CTGCTCCAGATTACTATGTTGGAACAGCTGGATTTACCTGT < 41bp 0.541969851102895 0.746430330900426 NA NA prediction 0.408920959595062 Functional Gain - IPO7 ENSG00000205339 CDS Human protein_coding chr11:9424887 chr11:9424886 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_33734 0 0 1 0 1 IPO7 chr11:9424837 3'AG 9424837 Downstream 50bp 30991 chr7 8099790 8099790 1 + C T READ 8099791 + 8099771 8099811 41 GTGCCAAAATCATCTGTTTCGCGTGTGCCCTGCAATGTAGA GTGCCAAAATCATCTGTTTTGCGTGTGCCCTGCAATGTAGA < 41bp 0.51910534044823 0.723564843033363 NA NA prediction 0.408919005170265 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8099791 chr7:8099790 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_33735 0 0 1 0 2 GLCCI1 chr7:8099726 3'AG 8099726 Downstream 65bp 30992 chr7 8099790 8099790 1 + C T READ 8099791 + 8099771 8099811 41 GTGCCAAAATCATCTGTTTCGCGTGTGCCCTGCAATGTAGA GTGCCAAAATCATCTGTTTTGCGTGTGCCCTGCAATGTAGA < 41bp 0.51910534044823 0.723564843033363 NA NA prediction 0.408919005170265 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8099791 chr7:8099790 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_33735 0 0 1 0 2 GLCCI1 chr7:8099878 5'GT 8099878 Upstream 89bp 30993 chr11 112070469 112070469 1 + G A CHOL 112070470 + 112070450 112070490 41 TCCAGAGAAGGTGGACCTTGGGGAGACAATCCATGGAGTCC TCCAGAGAAGGTGGACCTTAGGGAGACAATCCATGGAGTCC < 41bp 0.517004755667734 0.721461348273545 NA NA prediction 0.408913185211621 Functional Gain - BCO2 ENSG00000197580;ENSG00000272790 CDS Human other chr11:112070470 chr11:112070469 nonsynonymous SNV 0.051 1 20 hm7G_associated_SNPs_33737 0 0 1 0 2 BCO2 chr11:112070422 3'AG 112070422 Downstream 48bp 30994 chr11 112070469 112070469 1 + G A CHOL 112070470 + 112070450 112070490 41 TCCAGAGAAGGTGGACCTTGGGGAGACAATCCATGGAGTCC TCCAGAGAAGGTGGACCTTAGGGAGACAATCCATGGAGTCC < 41bp 0.517004755667734 0.721461348273545 NA NA prediction 0.408913185211621 Functional Gain - BCO2 ENSG00000197580;ENSG00000272790 CDS Human other chr11:112070470 chr11:112070469 nonsynonymous SNV 0.051 1 20 hm7G_associated_SNPs_33737 0 0 1 0 2 BCO2 chr11:112070550 5'GT 112070550 Upstream 82bp 30995 chr18 59947618 59947618 1 + C T COAD 59947619 + 59947599 59947639 41 CTTCGAGGCATGAGTGAAGCGTTAGTTGACAAGCGGGTTGC CTTCGAGGCATGAGTGAAGTGTTAGTTGACAAGCGGGTTGC < 41bp 0.500014709897538 0.704469284452426 NA NA prediction 0.408909149109776 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59947619 chr18:59947618 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33740 0 0 1 0 2 KIAA1468 chr18:59947593 3'AG 59947593 Downstream 26bp 30996 chr18 59947618 59947618 1 + C T COAD 59947619 + 59947599 59947639 41 CTTCGAGGCATGAGTGAAGCGTTAGTTGACAAGCGGGTTGC CTTCGAGGCATGAGTGAAGTGTTAGTTGACAAGCGGGTTGC < 41bp 0.500014709897538 0.704469284452426 NA NA prediction 0.408909149109776 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59947619 chr18:59947618 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33740 0 0 1 0 2 KIAA1468 chr18:59947675 5'GT 59947675 Upstream 58bp 30997 chr20 44678348 44678348 1 + G A rs6032635 44678349 + 44678329 44678369 41 TGACCTCCCAGCTGAAGGCGGGGAAGGGCCTGACCATCGTG TGACCTCCCAGCTGAAGGCAGGGAAGGGCCTGACCATCGTG < 41bp 0.485943590210819 0.70445378166253 NA NA prediction 0.408907563325061 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44678349 chr20:44678348 synonymous SNV . 0 20 hm7G_associated_SNPs_33743 0 0 0 0 1 SLC12A5 chr20:44678261 3'AG 44678261 Downstream 88bp 30998 chr4 96069948 96069948 1 + C T COAD 96069949 + 96069929 96069969 41 CACTCGAGTTGGCACCAAACGCTATATGCCTCCAGAAGTGT CACTCGAGTTGGCACCAAATGCTATATGCCTCCAGAAGTGT < 41bp 0.520173288054523 0.724626420348345 NA NA prediction 0.408906264587646 Functional Gain - BMPR1B ENSG00000138696 CDS Human protein_coding chr4:96069949 chr4:96069948 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_33744 0 0 0 0 1 BMPR1B chr4:96069899 3'AG 96069899 Downstream 50bp 30999 chr2 103010985 103010985 1 + G T UCEC 103010986 + 103010966 103011006 41 AGAATGCCGACCTGAAAATGGAGAGGAGCACACCTTTGCTG AGAATGCCGACCTGAAAATTGAGAGGAGCACACCTTTGCTG < 41bp 0.36768934261221 0.704452153287392 NA NA prediction 0.408904306574783 Functional Gain - IL18R1 ENSG00000115604 CDS Human protein_coding chr2:103010986 chr2:103010985 stopgain 0.619 0 20 hm7G_associated_SNPs_33745 0 0 0 0 1 IL18R1 chr2:103010929 3'AG 103010929 Downstream 57bp 31000 chr8 17417858 17417858 1 + C T STAD 17417859 + 17417839 17417879 41 ACCAGCCTGGCTTATCTTACGACCAGCCCAAATGTTCTCCT ACCAGCCTGGCTTATCTTATGACCAGCCCAAATGTTCTCCT < 41bp 0.492600461159742 0.704452056605021 NA NA prediction 0.408904113210042 Functional Gain - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17417859 chr8:17417858 synonymous SNV . 0 20 hm7G_associated_SNPs_33746 0 0 1 0 1 SLC7A2 chr8:17417837 3'AG 17417837 Downstream 22bp 31001 chr17 48356636 48356636 1 + G T UCEC 48356637 + 48356617 48356657 41 GGCCTGAAGAATATACCGGGGATCAGAGGGGCATTGACAAC GGCCTGAAGAATATACCGGTGATCAGAGGGGCATTGACAAC < 41bp 0.695503412673275 0.899953180919951 NA NA prediction 0.408899536493351 Functional Gain - TMEM92 ENSG00000167105 CDS Human protein_coding chr17:48356637 chr17:48356636 synonymous SNV . 0 20 hm7G_associated_SNPs_33748 0 0 0 0 1 TMEM92 chr17:48356556 3'AG 48356556 Downstream 81bp 31002 chr14 74371612 74371612 1 + C T UCEC 74371613 + 74371593 74371633 41 TTATTTTTGCAGAAATGACCGCTCCTTCATCTGTCCTGCAG TTATTTTTGCAGAAATGACTGCTCCTTCATCTGTCCTGCAG < 41bp 0.509854529478495 0.714304065379702 NA NA prediction 0.408899071802414 Functional Gain - ZNF410 ENSG00000119725 CDS Human protein_coding chr14:74371613 chr14:74371612 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_33750 0 0 1 0 1 ZNF410 chr14:74371605 3'AG 74371605 Downstream 8bp 31003 chrX 3028268 3028268 1 + C T CESC 3028269 + 3028249 3028289 41 GTGGCTCCTACCTGCACGCCGTGCGGTGGATCCCCAAGGAC GTGGCTCCTACCTGCACGCTGTGCGGTGGATCCCCAAGGAC < 41bp 0.498003810898216 0.704448674768425 NA NA prediction 0.408897349536849 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:3028269 chrX:3028268 synonymous SNV . 0 20 hm7G_associated_SNPs_33751 0 0 0 0 1 ARSF chrX:3028293 5'GT 3028293 Upstream 26bp 31004 chr22 40801180 40801180 1 + C T UCEC 40801181 + 40801161 40801201 41 TCCGCACCATGCCCAGCAACGCCTGCTTCGCCAGCATGGGT TCCGCACCATGCCCAGCAATGCCTGCTTCGCCAGCATGGGT < 41bp 0.525470656176373 0.729919323508629 NA NA prediction 0.408897334664511 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40801181 chr22:40801180 synonymous SNV . 0 20 hm7G_associated_SNPs_33752 0 0 1 0 1 SGSM3 chr22:40801145 3'AG 40801145 Downstream 36bp 31005 chr22 27019232 27019232 1 + G T LUAD 27019233 + 27019213 27019253 41 GAGGACGGCTTCCAGGGCCGGCGGCACGAGTTCACGGCCGA GAGGACGGCTTCCAGGGCCTGCGGCACGAGTTCACGGCCGA < 41bp 0.709029277889223 0.913477800396374 NA NA prediction 0.408897045014301 Functional Gain - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27019233 chr22:27019232 nonsynonymous SNV 0.958 3 20 hm7G_associated_SNPs_33753 0 0 0 0 1 CRYBA4 chr22:27019198 3'AG 27019198 Downstream 35bp 31006 chr1 161695810 161695810 1 + G A COAD 161695811 + 161695791 161695831 41 GCGGGCGCTACCAGTGCTCGGGCACCATGCGCATCCCGGTG GCGGGCGCTACCAGTGCTCAGGCACCATGCGCATCCCGGTG < 41bp 0.592600607878633 0.797048736635283 NA NA prediction 0.4088962575133 Functional Gain - FCRLB ENSG00000162746 CDS Human protein_coding chr1:161695811 chr1:161695810 synonymous SNV . 0 20 hm7G_associated_SNPs_33754 0 0 0 0 1 FCRLB chr1:161695877 5'GT 161695877 Upstream 68bp 31007 chr11 71208551 71208551 1 + C T PAAD 71208552 + 71208532 71208572 41 GATATGGGGATGACATATGCGGAGCTCTCGGTCTATGGGAA GATATGGGGATGACATATGTGGAGCTCTCGGTCTATGGGAA < 41bp 0.549130573643699 0.753578515373617 NA NA prediction 0.408895883459834 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71208552 chr11:71208551 nonsynonymous SNV 0.217 1 20 hm7G_associated_SNPs_33755 0 0 1 0 1 NADSYN1 chr11:71208529 3'AG 71208529 Downstream 23bp 31008 chr15 85478326 85478326 1 + C T STAD 85478327 + 85478307 85478347 41 TGAAGGTGGTCGCCAACATCGCTGCCAACCTGATTGCGTTC TGAAGGTGGTCGCCAACATTGCTGCCAACCTGATTGCGTTC < 41bp 0.491914750380787 0.704447287309456 NA NA prediction 0.408894574618912 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85478327 chr15:85478326 synonymous SNV . 0 20 hm7G_associated_SNPs_33756 0 0 0 0 2 SLC28A1 chr15:85478257 3'AG 85478257 Downstream 70bp 31009 chr15 85478326 85478326 1 + C T STAD 85478327 + 85478307 85478347 41 TGAAGGTGGTCGCCAACATCGCTGCCAACCTGATTGCGTTC TGAAGGTGGTCGCCAACATTGCTGCCAACCTGATTGCGTTC < 41bp 0.491914750380787 0.704447287309456 NA NA prediction 0.408894574618912 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85478327 chr15:85478326 synonymous SNV . 0 20 hm7G_associated_SNPs_33756 0 0 0 0 2 SLC28A1 chr15:85478425 5'GT 85478425 Upstream 100bp 31010 chr6 44275087 44275087 1 - G A GBM 44275086 - 44275066 44275106 41 GCCGAGTAGGGGTGGCAGACGAGGGGCGCACAGACACAGCG GCCGAGTAGGGGTGGCAGATGAGGGGCGCACAGACACAGCG < 41bp 0.5443824738142 0.748826732760211 NA NA prediction 0.408888517892021 Functional Gain - AARS2 ENSG00000124608 CDS Human protein_coding chr6:44275086 chr6:44275087 synonymous SNV . 0 20 hm7G_associated_SNPs_33759 0 0 1 0 1 AARS2 chr6:44275131 3'AG 44275131 Downstream 45bp 31011 chr7 151818021 151818021 1 + G A CESC 151818022 + 151818002 151818042 41 ACGGCTCATGAAATGCCACGGGTCAGGAGGATCCCAGCAGT ACGGCTCATGAAATGCCACAGGTCAGGAGGATCCCAGCAGT < 41bp 0.494414559626785 0.704444105559301 NA NA prediction 0.408888211118603 Functional Gain - GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151818022 chr7:151818021 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_33760 0 0 1 0 1 GALNT11 chr7:151818053 5'GT 151818053 Upstream 33bp 31012 chr12 41422966 41422966 1 + G T UCEC 41422967 + 41422947 41422987 41 ATGGAGAATACGTTGTGGAGGTTCGCGCGCACAGTGATGGA ATGGAGAATACGTTGTGGATGTTCGCGCGCACAGTGATGGA < 41bp 0.384144306932346 0.704440545169295 NA NA prediction 0.408881090338589 Functional Gain - CNTN1 ENSG00000018236 CDS Human protein_coding chr12:41422967 chr12:41422966 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_33763 0 0 0 0 1 CNTN1 chr12:41423021 5'GT 41423021 Upstream 56bp 31013 chr3 111394159 111394159 1 + G A LUSC 111394160 + 111394140 111394180 41 CTGCTCCCCCAACCCCAGCGGGACAAAGACATCATCGGAGG CTGCTCCCCCAACCCCAGCAGGACAAAGACATCATCGGAGG < 41bp 0.521839162113056 0.726279315835876 NA NA prediction 0.408880307445639 Functional Gain - PLCXD2 ENSG00000240891 CDS Human protein_coding chr3:111394160 chr3:111394159 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_33764 0 0 1 0 1 PLCXD2 chr3:111394255 5'GT 111394255 Upstream 97bp 31014 chr1 113059816 113059816 1 + G A COAD 113059817 + 113059797 113059837 41 TGTACTCTGCGCACCTGCTGGCGTGCACTCTCAGATTTCCG TGTACTCTGCGCACCTGCTAGCGTGCACTCTCAGATTTCCG < 41bp 0.490578237832442 0.704437714511042 NA NA prediction 0.408875429022085 Functional Gain - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113059817 chr1:113059816 stopgain 1.000 1 20 hm7G_associated_SNPs_33765 0 0 0 0 1 WNT2B chr1:113059743 3'AG 113059743 Downstream 74bp 31015 chr11 61503058 61503058 1 + C T COAD 61503059 + 61503039 61503079 41 GAAACGCCCTTCTACGTGGCGGTGGACCATGACAAGAAGAA GAAACGCCCTTCTACGTGGTGGTGGACCATGACAAGAAGAA < 41bp 0.548893655513218 0.753329371620644 NA NA prediction 0.408871432214852 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503059 chr11:61503058 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_33767 0 0 1 0 2 DAGLA chr11:61503033 3'AG 61503033 Downstream 26bp 31016 chr11 61503058 61503058 1 + C T COAD 61503059 + 61503039 61503079 41 GAAACGCCCTTCTACGTGGCGGTGGACCATGACAAGAAGAA GAAACGCCCTTCTACGTGGTGGTGGACCATGACAAGAAGAA < 41bp 0.548893655513218 0.753329371620644 NA NA prediction 0.408871432214852 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503059 chr11:61503058 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_33767 0 0 1 0 2 DAGLA chr11:61503116 5'GT 61503116 Upstream 59bp 31017 chr19 35804218 35804218 1 + G A LUSC 35804219 + 35804199 35804239 41 AGGCGCCTGGGATCTGAGAGGAGGCTGCTGGGCCTTCGGGG AGGCGCCTGGGATCTGAGAAGAGGCTGCTGGGCCTTCGGGG < 41bp 0.551689393715675 0.756124450658599 NA NA prediction 0.408870113885847 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35804219 chr19:35804218 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_33768 0 0 0 0 1 MAG chr19:35804193 3'AG 35804193 Downstream 26bp 31018 chr22 25320195 25320195 1 + C T UCEC 25320196 + 25320176 25320216 41 AAGCAAGTCCTGAAGCTGGCGCGGGACCTCGTGTACAAGGT AAGCAAGTCCTGAAGCTGGTGCGGGACCTCGTGTACAAGGT < 41bp 0.526908318903815 0.731341750993028 NA NA prediction 0.408866864178427 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25320196 chr22:25320195 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_33769 0 0 0 0 1 SGSM1 chr22:25320153 3'AG 25320153 Downstream 43bp 31019 chr8 124219413 124219413 1 + G A COAD 124219414 + 124219394 124219434 41 CAGCTTCACCTGGCTCTGCGGACACGTGCACCGGAACATCC CAGCTTCACCTGGCTCTGCAGACACGTGCACCGGAACATCC < 41bp 0.505245539976163 0.709675844179063 NA NA prediction 0.408860608405802 Functional Gain - FAM83A ENSG00000147689 CDS Human protein_coding chr8:124219414 chr8:124219413 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_33771 0 0 1 0 1 FAM83A chr8:124219397 3'AG 124219397 Downstream 17bp 31020 chr19 18288737 18288737 1 + G A rs571503439 18288738 + 18288718 18288758 41 GTGATGGCCGGTGAGCTGCGGAGAGCTCATGGAAGGCGAGT GTGATGGCCGGTGAGCTGCAGAGAGCTCATGGAAGGCGAGT < 41bp 0.536241700004616 0.740671256513017 NA NA prediction 0.408859113016802 Functional Gain - IFI30 ENSG00000216490;ENSG00000268173 UTR3 Human protein_coding chr19:18288738 chr19:18288737 . . 0 20 hm7G_associated_SNPs_33772 0 0 1 0 1 IFI30 chr19:18288659 3'AG 18288659 Downstream 79bp 31021 chr7 73803525 73803525 1 + C T SKCM 73803526 + 73803506 73803546 41 AGAGCTGGAGACCGTGTCCCGGAAGACCCATGACGCCTCGG AGAGCTGGAGACCGTGTCCTGGAAGACCCATGACGCCTCGG < 41bp 0.531093742160838 0.735521467769325 NA NA prediction 0.408855451216975 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73803526 chr7:73803525 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_33774 0 0 1 0 2 CLIP2 chr7:73803433 3'AG 73803433 Downstream 93bp 31022 chr7 73803525 73803525 1 + C T SKCM 73803526 + 73803506 73803546 41 AGAGCTGGAGACCGTGTCCCGGAAGACCCATGACGCCTCGG AGAGCTGGAGACCGTGTCCTGGAAGACCCATGACGCCTCGG < 41bp 0.531093742160838 0.735521467769325 NA NA prediction 0.408855451216975 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73803526 chr7:73803525 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_33774 0 0 1 0 2 CLIP2 chr7:73803589 5'GT 73803589 Upstream 65bp 31023 chr9 20944730 20944730 1 + C T UCEC 20944731 + 20944711 20944751 41 TTGCTCCGGAAGCTGTCTGCGCACGTAGATGACAGCGGGAG TTGCTCCGGAAGCTGTCTGTGCACGTAGATGACAGCGGGAG < 41bp 0.489836730292506 0.704425235678841 NA NA prediction 0.408850471357681 Functional Gain - FOCAD ENSG00000188352 CDS Human protein_coding chr9:20944731 chr9:20944730 nonsynonymous SNV 0.238 0 20 hm7G_associated_SNPs_33775 0 0 0 0 1 FOCAD chr9:20944773 5'GT 20944773 Upstream 44bp 31024 chr17 73230856 73230856 1 + C T rs9988 73230857 + 73230837 73230877 41 GGATGACTCTGCTGACAGACGCCTTGCCCCTTTTGGAACAG GGATGACTCTGCTGACAGATGCCTTGCCCCTTTTGGAACAG < 41bp 0.523591481648621 0.728016703850242 NA NA prediction 0.408850444403243 Functional Gain - NUP85 ENSG00000125450 CDS Human protein_coding chr17:73230857 chr17:73230856 synonymous SNV . 0 20 hm7G_associated_SNPs_33776 0 0 1 0 1 NUP85 chr17:73230883 5'GT 73230883 Upstream 28bp 31025 chr17 74901357 74901357 1 + C T BLCA 74901358 + 74901338 74901378 41 AGGCTCACAGCCCAGTGGGCGCTGGCTGCCCAGCGCCTGGC AGGCTCACAGCCCAGTGGGTGCTGGCTGCCCAGCGCCTGGC < 41bp 0.546173476437139 0.750598576116202 NA NA prediction 0.408850199358127 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74901358 chr17:74901357 nonsynonymous SNV 0.389 0 20 hm7G_associated_SNPs_33777 0 0 0 0 1 MGAT5B chr17:74901415 5'GT 74901415 Upstream 59bp 31026 chr14 45576788 45576788 1 + C T GBM 45576789 + 45576769 45576809 41 CCTGGTGATGATCTACCATCGGGAATTGAAGACATAACCGA CCTGGTGATGATCTACCATTGGGAATTGAAGACATAACCGA < 41bp 0.494942547944575 0.704424993896152 NA NA prediction 0.408849987792303 Functional Gain - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45576789 chr14:45576788 nonsynonymous SNV 0.932 1 20 hm7G_associated_SNPs_33778 0 0 1 0 1 PRPF39 chr14:45576819 5'GT 45576819 Upstream 32bp 31027 chr11 94563241 94563241 1 + C T UCEC 94563242 + 94563222 94563262 41 AAAGAACTTCAGAGAATTTCGGAAGCCTATGAAAGTCTGGT AAAGAACTTCAGAGAATTTTGGAAGCCTATGAAAGTCTGGT < 41bp 0.535942059517041 0.74036635854116 NA NA prediction 0.408848598048238 Functional Gain - AMOTL1 ENSG00000166025 CDS Human protein_coding chr11:94563242 chr11:94563241 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_33780 0 0 1 0 1 AMOTL1 chr11:94563216 3'AG 94563216 Downstream 26bp 31028 chr14 102916187 102916187 1 + C T COAD 102916188 + 102916168 102916208 41 GCAAGAATGAATTCCACGTCGCTAAGGGAAGTCTCATAGGT GCAAGAATGAATTCCACGTTGCTAAGGGAAGTCTCATAGGT < 41bp 0.524111904419713 0.72853459447088 NA NA prediction 0.408845380102334 Functional Gain - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102916188 chr14:102916187 synonymous SNV . 0 20 hm7G_associated_SNPs_33781 0 0 0 0 1 TECPR2 chr14:102916206 5'GT 102916206 Upstream 20bp 31029 chr2 228758521 228758521 1 + G T PAAD 228758522 + 228758502 228758542 41 TTGTGTTAGCTTTATCACAGGAAGCTATGATCGGACGTGCA TTGTGTTAGCTTTATCACATGAAGCTATGATCGGACGTGCA < 41bp 0.695990684320215 0.900412419792474 NA NA prediction 0.408843470944517 Functional Gain - DAW1 ENSG00000123977 CDS Human protein_coding chr2:228758522 chr2:228758521 stopgain 0.995 1 20 hm7G_associated_SNPs_33783 0 0 0 0 1 DAW1 chr2:228758511 3'AG 228758511 Downstream 11bp 31030 chr16 30764595 30764595 1 + G A COAD 30764596 + 30764576 30764616 41 ACTATCTCACAGAGAAGGTGGCCCTCTCTGAAAAGGAAACC ACTATCTCACAGAGAAGGTAGCCCTCTCTGAAAAGGAAACC < 41bp 0.484542438807138 0.704420554910268 NA NA prediction 0.408841109820536 Functional Gain - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30764596 chr16:30764595 synonymous SNV . 0 20 hm7G_associated_SNPs_33784 0 0 1 0 2 PHKG2 chr16:30764553 3'AG 30764553 Downstream 43bp 31031 chr16 30764595 30764595 1 + G A COAD 30764596 + 30764576 30764616 41 ACTATCTCACAGAGAAGGTGGCCCTCTCTGAAAAGGAAACC ACTATCTCACAGAGAAGGTAGCCCTCTCTGAAAAGGAAACC < 41bp 0.484542438807138 0.704420554910268 NA NA prediction 0.408841109820536 Functional Gain - PHKG2 ENSG00000156873 CDS Human protein_coding chr16:30764596 chr16:30764595 synonymous SNV . 0 20 hm7G_associated_SNPs_33784 0 0 1 0 2 PHKG2 chr16:30764618 5'GT 30764618 Upstream 24bp 31032 chr1 54520164 54520164 1 + G T LUAD 54520165 + 54520145 54520185 41 AGAAAGATTCTGGAGGAAAGGTTTACAAGCAGGCCACGATT AGAAAGATTCTGGAGGAAATGTTTACAAGCAGGCCACGATT < 41bp 0.696330282637183 0.900748696679726 NA NA prediction 0.408836828085086 Functional Gain - TCEANC2 ENSG00000116205 CDS Human protein_coding chr1:54520165 chr1:54520164 nonsynonymous SNV 0.969 1 20 hm7G_associated_SNPs_33785 0 0 1 0 1 TCEANC2 chr1:54520197 5'GT 54520197 Upstream 34bp 31033 chr2 220396544 220396544 1 + G T LUAD 220396545 + 220396525 220396565 41 CGGAGCTCGCTGCCCAGCCGGGCAGGGGGCATGGGCAGTGG CGGAGCTCGCTGCCCAGCCTGGCAGGGGGCATGGGCAGTGG < 41bp 0.712022435374501 0.91643981793248 NA NA prediction 0.408834765115958 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396545 chr2:220396544 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_33786 0 0 1 0 2 ASIC4 chr2:220396480 3'AG 220396480 Downstream 65bp 31034 chr2 220396544 220396544 1 + G T LUAD 220396545 + 220396525 220396565 41 CGGAGCTCGCTGCCCAGCCGGGCAGGGGGCATGGGCAGTGG CGGAGCTCGCTGCCCAGCCTGGCAGGGGGCATGGGCAGTGG < 41bp 0.712022435374501 0.91643981793248 NA NA prediction 0.408834765115958 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396545 chr2:220396544 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_33786 0 0 1 0 2 ASIC4 chr2:220396624 5'GT 220396624 Upstream 81bp 31035 chr17 41165176 41165176 1 + C T COAD 41165177 + 41165157 41165197 41 ATCCACTGCCCTCTGCTTGCGGGCTCTGCTCTGATCACCTT ATCCACTGCCCTCTGCTTGTGGGCTCTGCTCTGATCACCTT < 41bp 0.53416742395636 0.738584707038978 NA NA prediction 0.408834566165236 Functional Gain - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165177 chr17:41165176 nonsynonymous SNV 0.280 1 20 hm7G_associated_SNPs_33787 0 0 1 0 1 IFI35 chr17:41165211 5'GT 41165211 Upstream 36bp 31036 chr11 121058574 121058574 1 + C T SKCM 121058575 + 121058555 121058595 41 AAGATAACACCATTGGCATCGAGGAGAATGCAGTCTCCCTG AAGATAACACCATTGGCATTGAGGAGAATGCAGTCTCCCTG < 41bp 0.524215820802893 0.72863275647302 NA NA prediction 0.408833871340254 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121058575 chr11:121058574 synonymous SNV . 0 20 hm7G_associated_SNPs_33788 0 0 0 0 1 TECTA chr11:121058541 3'AG 121058541 Downstream 34bp 31037 chr13 113478723 113478723 1 + C T PAAD 113478724 + 113478704 113478744 41 TCAATCAAAATCTCAGAAGCGATCTGCCGTGGAAAAGTAAG TCAATCAAAATCTCAGAAGTGATCTGCCGTGGAAAAGTAAG < 41bp 0.493275760153892 0.704413665466463 NA NA prediction 0.408827330932926 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113478724 chr13:113478723 stopgain 0.457 1 20 hm7G_associated_SNPs_33789 0 0 1 0 2 ATP11A chr13:113478658 3'AG 113478658 Downstream 66bp 31038 chr13 113478723 113478723 1 + C T PAAD 113478724 + 113478704 113478744 41 TCAATCAAAATCTCAGAAGCGATCTGCCGTGGAAAAGTAAG TCAATCAAAATCTCAGAAGTGATCTGCCGTGGAAAAGTAAG < 41bp 0.493275760153892 0.704413665466463 NA NA prediction 0.408827330932926 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113478724 chr13:113478723 stopgain 0.457 1 20 hm7G_associated_SNPs_33789 0 0 1 0 2 ATP11A chr13:113478739 5'GT 113478739 Upstream 17bp 31039 chr1 109806777 109806777 1 + G A OV 109806778 + 109806758 109806798 41 TCCGTCTGGAGCCAGGCCGGGCCAATGACGGTGACTGGCAC TCCGTCTGGAGCCAGGCCGAGCCAATGACGGTGACTGGCAC < 41bp 0.491267716031329 0.70441361076809 NA NA prediction 0.40882722153618 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109806778 chr1:109806777 synonymous SNV . 0 20 hm7G_associated_SNPs_33790 0 0 1 0 1 CELSR2 chr1:109806700 3'AG 109806700 Downstream 78bp 31040 chr19 57746650 57746650 1 + G T LUAD 57746651 + 57746631 57746671 41 CACTATCAATGCCTCTGGGGGCCCGGGACTTGATTTCCAGG CACTATCAATGCCTCTGGGTGCCCGGGACTTGATTTCCAGG < 41bp 0.702302323595667 0.906714672505976 NA NA prediction 0.408824697820617 Functional Gain - AURKC ENSG00000105146 CDS Human protein_coding chr19:57746651 chr19:57746650 synonymous SNV . 0 20 hm7G_associated_SNPs_33791 0 0 0 0 1 AURKC chr19:57746615 3'AG 57746615 Downstream 36bp 31041 chr22 50960791 50960791 1 + G A rs113245089 50960792 + 50960772 50960812 41 GTGGCTGAGCAGTGGCTGCGGCCTGCAGAGGAGGACCACCT GTGGCTGAGCAGTGGCTGCAGCCTGCAGAGGAGGACCACCT < 41bp 0.480547732375766 0.704411054049862 NA NA prediction 0.408822108099724 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960792 chr22:50960791 nonsynonymous SNV 0.022 0 20 hm7G_associated_SNPs_33792 0 0 1 0 2 NCAPH2 chr22:50960772 3'AG 50960772 Downstream 20bp 31042 chr22 50960791 50960791 1 + G A rs113245089 50960792 + 50960772 50960812 41 GTGGCTGAGCAGTGGCTGCGGCCTGCAGAGGAGGACCACCT GTGGCTGAGCAGTGGCTGCAGCCTGCAGAGGAGGACCACCT < 41bp 0.480547732375766 0.704411054049862 NA NA prediction 0.408822108099724 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960792 chr22:50960791 nonsynonymous SNV 0.022 0 20 hm7G_associated_SNPs_33792 0 0 1 0 2 NCAPH2 chr22:50960844 5'GT 50960844 Upstream 54bp 31043 chr7 24703293 24703293 1 + G T SKCM 24703294 + 24703274 24703314 41 AGGATTGAAGTTTTCCAAAGGAGAGATTCTTCAGATTGTAA AGGATTGAAGTTTTCCAAATGAGAGATTCTTCAGATTGTAA < 41bp 0.376926832103293 0.704409731159336 NA NA prediction 0.408819462318673 Functional Gain - MPP6 ENSG00000105926 CDS Human protein_coding chr7:24703294 chr7:24703293 stopgain 1.000 1 20 hm7G_associated_SNPs_33793 0 0 1 0 2 MPP6 chr7:24703209 3'AG 24703209 Downstream 85bp 31044 chr7 24703293 24703293 1 + G T SKCM 24703294 + 24703274 24703314 41 AGGATTGAAGTTTTCCAAAGGAGAGATTCTTCAGATTGTAA AGGATTGAAGTTTTCCAAATGAGAGATTCTTCAGATTGTAA < 41bp 0.376926832103293 0.704409731159336 NA NA prediction 0.408819462318673 Functional Gain - MPP6 ENSG00000105926 CDS Human protein_coding chr7:24703294 chr7:24703293 stopgain 1.000 1 20 hm7G_associated_SNPs_33793 0 0 1 0 2 MPP6 chr7:24703340 5'GT 24703340 Upstream 48bp 31045 chr2 88825931 88825931 1 + G A COAD 88825932 + 88825912 88825952 41 TTGTGCTTTAGGACCCTGTGGATTTAGACATATACCAAAGC TTGTGCTTTAGGACCCTGTAGATTTAGACATATACCAAAGC < 41bp 0.508533622302301 0.712941793350782 NA NA prediction 0.408816342096961 Functional Gain - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88825932 chr2:88825931 synonymous SNV . 0 20 hm7G_associated_SNPs_33794 0 0 0 0 2 TEX37 chr2:88825923 3'AG 88825923 Downstream 9bp 31046 chr2 88825931 88825931 1 + G A COAD 88825932 + 88825912 88825952 41 TTGTGCTTTAGGACCCTGTGGATTTAGACATATACCAAAGC TTGTGCTTTAGGACCCTGTAGATTTAGACATATACCAAAGC < 41bp 0.508533622302301 0.712941793350782 NA NA prediction 0.408816342096961 Functional Gain - TEX37 ENSG00000172073 CDS Human protein_coding chr2:88825932 chr2:88825931 synonymous SNV . 0 20 hm7G_associated_SNPs_33794 0 0 0 0 2 TEX37 chr2:88826015 5'GT 88826015 Upstream 85bp 31047 chr6 123319255 123319255 1 + G A SKCM 123319256 + 123319236 123319276 41 CTGGGGGCCTGGCCAATCTGGACCACTATGGCAGGAAGATT CTGGGGGCCTGGCCAATCTAGACCACTATGGCAGGAAGATT < 41bp 0.507644681830384 0.712050169904172 NA NA prediction 0.408810976147576 Functional Gain - CLVS2 ENSG00000146352 CDS Human protein_coding chr6:123319256 chr6:123319255 synonymous SNV . 0 20 hm7G_associated_SNPs_33795 0 0 0 0 1 CLVS2 chr6:123319311 5'GT 123319311 Upstream 57bp 31048 chr5 60817171 60817171 1 + G T UCEC 60817172 + 60817152 60817192 41 CTAAAACAGCTGAAGAAATGGAATAGTGTTGATGTCTGTCC CTAAAACAGCTGAAGAAATTGAATAGTGTTGATGTCTGTCC < 41bp 0.363438262790728 0.704402789533717 NA NA prediction 0.408805579067435 Functional Gain - ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60817172 chr5:60817171 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_33797 0 0 0 0 2 ZSWIM6 chr5:60817090 3'AG 60817090 Downstream 82bp 31049 chr5 60817171 60817171 1 + G T UCEC 60817172 + 60817152 60817192 41 CTAAAACAGCTGAAGAAATGGAATAGTGTTGATGTCTGTCC CTAAAACAGCTGAAGAAATTGAATAGTGTTGATGTCTGTCC < 41bp 0.363438262790728 0.704402789533717 NA NA prediction 0.408805579067435 Functional Gain - ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60817172 chr5:60817171 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_33797 0 0 0 0 2 ZSWIM6 chr5:60817269 5'GT 60817269 Upstream 99bp 31050 chr16 68109352 68109352 1 + G A LUAD 68109353 + 68109333 68109373 41 CAAGACTTCAGAGCAGACAGGGGAGCCAGCTGAAGATACCT CAAGACTTCAGAGCAGACAAGGGAGCCAGCTGAAGATACCT < 41bp 0.556927161590829 0.761328715716416 NA NA prediction 0.408803108251175 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109353 chr16:68109352 nonsynonymous SNV 0.030 0 20 hm7G_associated_SNPs_33798 0 0 0 0 2 DUS2 chr16:68109258 3'AG 68109258 Downstream 95bp 31051 chr16 68109352 68109352 1 + G A LUAD 68109353 + 68109333 68109373 41 CAAGACTTCAGAGCAGACAGGGGAGCCAGCTGAAGATACCT CAAGACTTCAGAGCAGACAAGGGAGCCAGCTGAAGATACCT < 41bp 0.556927161590829 0.761328715716416 NA NA prediction 0.408803108251175 Functional Gain - DUS2 ENSG00000167264 CDS Human protein_coding chr16:68109353 chr16:68109352 nonsynonymous SNV 0.030 0 20 hm7G_associated_SNPs_33798 0 0 0 0 2 DUS2 chr16:68109407 5'GT 68109407 Upstream 56bp 31052 chr16 31383800 31383800 1 + C T rs369596158 31383801 + 31383781 31383821 41 ACCTGCGGCCTATGCTGGCCGCCGATGCTCAGAGATACTTC ACCTGCGGCCTATGCTGGCTGCCGATGCTCAGAGATACTTC < 41bp 0.50114871608108 0.705549280473481 NA NA prediction 0.408801128784802 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31383801 chr16:31383800 synonymous SNV . 0 20 hm7G_associated_SNPs_33799 0 0 0 0 1 ITGAX chr16:31383830 5'GT 31383830 Upstream 31bp 31053 chr11 61545217 61545217 1 + C T UCEC 61545218 + 61545198 61545238 41 CCCCGCAGGTGGACACCACCGAGCAATTGAAGAGGATCTCG CCCCGCAGGTGGACACCACTGAGCAATTGAAGAGGATCTCG < 41bp 0.522112032861906 0.72651172131739 NA NA prediction 0.408799376910969 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61545218 chr11:61545217 synonymous SNV . 0 20 hm7G_associated_SNPs_33800 0 0 1 0 1 MYRF chr11:61545206 3'AG 61545206 Downstream 12bp 31054 chr1 160100080 160100080 1 + G T LUSC 160100081 + 160100061 160100101 41 GACTTGGGGAGCGTGTGCTGGGTGAGAGGCCAGAAACAGGA GACTTGGGGAGCGTGTGCTTGGTGAGAGGCCAGAAACAGGA < 41bp 0.710453734212931 0.914852478891018 NA NA prediction 0.408797489356174 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160100081 chr1:160100080 synonymous SNV . 0 20 hm7G_associated_SNPs_33801 0 0 0 0 1 ATP1A2 chr1:160100081 5'GT 160100081 Upstream 2bp 31055 chr21 42811650 42811650 1 + G A SKCM 42811651 + 42811631 42811671 41 CATCGCCGGGGAAGGAATGGGAATCAGTCATGAGCTAATCA CATCGCCGGGGAAGGAATGAGAATCAGTCATGAGCTAATCA < 41bp 0.502600853216364 0.706998709072272 NA NA prediction 0.408795711711817 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42811651 chr21:42811650 nonsynonymous SNV 0.775 3 20 hm7G_associated_SNPs_33802 0 0 0 0 1 MX1 chr21:42811621 3'AG 42811621 Downstream 30bp 31056 chr7 128486411 128486411 1 + C T LUSC 128486412 + 128486392 128486432 41 TGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACCGAGGGCT TGTGCCCAAGAGCCCCTTCTGAGTGGGCGTGACCGAGGGCT < 41bp 0.529244205706261 0.733641893970958 NA NA prediction 0.408795376529394 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128486412 chr7:128486411 stopgain 0.992 1 20 hm7G_associated_SNPs_33803 0 0 1 0 1 FLNC chr7:128486355 3'AG 128486355 Downstream 57bp 31057 chr22 39483117 39483117 1 + C T LGG 39483118 + 39483098 39483138 41 AGACCTGAGTGGGAGGCTGCGGGCCATTCTCCAGGTGAGGG AGACCTGAGTGGGAGGCTGTGGGCCATTCTCCAGGTGAGGG < 41bp 0.504695470270685 0.709093137626707 NA NA prediction 0.408795334712044 Functional Gain - APOBEC3G ENSG00000239713 CDS Human protein_coding chr22:39483118 chr22:39483117 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_33804 0 0 0 0 1 APOBEC3G chr22:39483131 5'GT 39483131 Upstream 15bp 31058 chr1 26517891 26517891 1 + C T rs11247867 26517892 + 26517872 26517912 41 TGATCAATGCCATCACCATCGCTCTCCGTACCAACTCCTAC TGATCAATGCCATCACCATTGCTCTCCGTACCAACTCCTAC < 41bp 0.492063487259478 0.704396555363833 NA NA prediction 0.408793110727666 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26517892 chr1:26517891 synonymous SNV . 0 20 hm7G_associated_SNPs_33807 0 0 0 0 1 CATSPER4 chr1:26517921 5'GT 26517921 Upstream 31bp 31059 chr17 28747951 28747951 1 + C T UCEC 28747952 + 28747932 28747972 41 CCCACCTGCTTCACAGCTTCGACAGGAATGGGAGAACAATC CCCACCTGCTTCACAGCTTTGACAGGAATGGGAGAACAATC < 41bp 0.515288296379105 0.719683853337016 NA NA prediction 0.408791113915823 Functional Gain - CPD ENSG00000108582 CDS Human protein_coding chr17:28747952 chr17:28747951 stopgain 0.997 0 20 hm7G_associated_SNPs_33808 0 0 1 0 2 CPD chr17:28747859 3'AG 28747859 Downstream 93bp 31060 chr17 28747951 28747951 1 + C T UCEC 28747952 + 28747932 28747972 41 CCCACCTGCTTCACAGCTTCGACAGGAATGGGAGAACAATC CCCACCTGCTTCACAGCTTTGACAGGAATGGGAGAACAATC < 41bp 0.515288296379105 0.719683853337016 NA NA prediction 0.408791113915823 Functional Gain - CPD ENSG00000108582 CDS Human protein_coding chr17:28747952 chr17:28747951 stopgain 0.997 0 20 hm7G_associated_SNPs_33808 0 0 1 0 2 CPD chr17:28748001 5'GT 28748001 Upstream 51bp 31061 chr17 54428302 54428302 1 + C T SKCM 54428303 + 54428283 54428323 41 TTTTAGGACAAGAACTGATCGGCTGAGTCTCAGGAAGACCT TTTTAGGACAAGAACTGATTGGCTGAGTCTCAGGAAGACCT < 41bp 0.496712477999724 0.704392353892811 NA NA prediction 0.408784707785621 Functional Gain - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54428303 chr17:54428302 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_33810 0 0 0 0 1 ANKFN1 chr17:54428328 5'GT 54428328 Upstream 27bp 31062 chr19 41074106 41074106 1 + C T UCEC 41074107 + 41074087 41074127 41 CTATGAGCAGATGGAGCGGCGGCGCGAGCGGCGTGAGCGGC CTATGAGCAGATGGAGCGGTGGCGCGAGCGGCGTGAGCGGC < 41bp 0.508400222682599 0.712792515528568 NA NA prediction 0.40878458569194 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41074107 chr19:41074106 nonsynonymous SNV 0.117 2 20 hm7G_associated_SNPs_33811 0 0 0 0 1 SPTBN4 chr19:41074188 5'GT 41074188 Upstream 83bp 31063 chr19 39908214 39908214 1 + C T rs73033371 39908215 + 39908195 39908235 41 GAACTAGGGAAGCACTGGGCGGAGGGCCCAGGCACTGGGGG GAACTAGGGAAGCACTGGGTGGAGGGCCCAGGCACTGGGGG < 41bp 0.551693965130056 0.756085684010633 NA NA prediction 0.408783437761155 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39908215 chr19:39908214 nonsynonymous SNV 0.874 0 20 hm7G_associated_SNPs_33812 0 0 1 0 1 PLEKHG2 chr19:39908195 3'AG 39908195 Downstream 20bp 31064 chr14 24524954 24524954 1 + G A UCEC 24524955 + 24524935 24524975 41 TACATACCCTAAGCAAGTCGGGGAGCCTCGAAGAGCTGGTG TACATACCCTAAGCAAGTCAGGGAGCCTCGAAGAGCTGGTG < 41bp 0.488719074753215 0.704390527574361 NA NA prediction 0.408781055148723 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24524955 chr14:24524954 synonymous SNV . 0 20 hm7G_associated_SNPs_33814 0 0 0 0 2 CARMIL3 chr14:24524910 3'AG 24524910 Downstream 45bp 31065 chr14 24524954 24524954 1 + G A UCEC 24524955 + 24524935 24524975 41 TACATACCCTAAGCAAGTCGGGGAGCCTCGAAGAGCTGGTG TACATACCCTAAGCAAGTCAGGGAGCCTCGAAGAGCTGGTG < 41bp 0.488719074753215 0.704390527574361 NA NA prediction 0.408781055148723 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24524955 chr14:24524954 synonymous SNV . 0 20 hm7G_associated_SNPs_33814 0 0 0 0 2 CARMIL3 chr14:24524998 5'GT 24524998 Upstream 45bp 31066 chr6 43550126 43550126 1 + C T UCEC 43550127 + 43550107 43550147 41 TTTTGTTCAAGTGGAGCAGCGGCAAAATCCTCATTTGAGGA TTTTGTTCAAGTGGAGCAGTGGCAAAATCCTCATTTGAGGA < 41bp 0.513534963907774 0.717922712220997 NA NA prediction 0.408775496626445 Functional Gain - POLH ENSG00000170734 CDS Human protein_coding chr6:43550127 chr6:43550126 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33815 0 0 1 0 2 POLH chr6:43550053 3'AG 43550053 Downstream 74bp 31067 chr6 43550126 43550126 1 + C T UCEC 43550127 + 43550107 43550147 41 TTTTGTTCAAGTGGAGCAGCGGCAAAATCCTCATTTGAGGA TTTTGTTCAAGTGGAGCAGTGGCAAAATCCTCATTTGAGGA < 41bp 0.513534963907774 0.717922712220997 NA NA prediction 0.408775496626445 Functional Gain - POLH ENSG00000170734 CDS Human protein_coding chr6:43550127 chr6:43550126 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_33815 0 0 1 0 2 POLH chr6:43550193 5'GT 43550193 Upstream 68bp 31068 chr22 20094192 20094192 1 + C T PAAD 20094193 + 20094173 20094213 41 AAGAGTGAATACGTCATGGCGTGTGGCAAGCACACAGTGCG AAGAGTGAATACGTCATGGTGTGTGGCAAGCACACAGTGCG < 41bp 0.499051064539221 0.70438393042592 NA NA prediction 0.40876786085184 Functional Gain - DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20094193 chr22:20094192 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_33817 0 0 1 0 2 DGCR8 chr22:20094115 3'AG 20094115 Downstream 78bp 31069 chr22 20094192 20094192 1 + C T PAAD 20094193 + 20094173 20094213 41 AAGAGTGAATACGTCATGGCGTGTGGCAAGCACACAGTGCG AAGAGTGAATACGTCATGGTGTGTGGCAAGCACACAGTGCG < 41bp 0.499051064539221 0.70438393042592 NA NA prediction 0.40876786085184 Functional Gain - DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20094193 chr22:20094192 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_33817 0 0 1 0 2 DGCR8 chr22:20094221 5'GT 20094221 Upstream 30bp 31070 chr16 72133119 72133119 1 + C T UCEC 72133120 + 72133100 72133140 41 CAGGAAGACGTGAGGAGGGCGAAGAAGGAATTTCATTTGAC CAGGAAGACGTGAGGAGGGTGAAGAAGGAATTTCATTTGAC < 41bp 0.553950274589439 0.758333950115296 NA NA prediction 0.408767351051714 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72133120 chr16:72133119 synonymous SNV . 0 20 hm7G_associated_SNPs_33818 0 0 1 0 1 DHX38 chr16:72133103 3'AG 72133103 Downstream 17bp 31071 chr22 38208980 38208980 1 + C T UCEC 38208981 + 38208961 38209001 41 CCAGCTGTTATGACGCCAACGCCGGCCTCTTTGAGGTGTGT CCAGCTGTTATGACGCCAATGCCGGCCTCTTTGAGGTGTGT < 41bp 0.530965328593307 0.735348095967898 NA NA prediction 0.408765534749181 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38208981 chr22:38208980 synonymous SNV . 0 20 hm7G_associated_SNPs_33820 0 0 1 0 2 GCAT chr22:38208894 3'AG 38208894 Downstream 87bp 31072 chr22 38208980 38208980 1 + C T UCEC 38208981 + 38208961 38209001 41 CCAGCTGTTATGACGCCAACGCCGGCCTCTTTGAGGTGTGT CCAGCTGTTATGACGCCAATGCCGGCCTCTTTGAGGTGTGT < 41bp 0.530965328593307 0.735348095967898 NA NA prediction 0.408765534749181 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38208981 chr22:38208980 synonymous SNV . 0 20 hm7G_associated_SNPs_33820 0 0 1 0 2 GCAT chr22:38208995 5'GT 38208995 Upstream 16bp 31073 chr12 109288102 109288102 1 + C T BRCA 109288103 + 109288083 109288123 41 ATGGGCTGGGGCGCTACAACGAGACCCCCTGCTGCAGCCAG ATGGGCTGGGGCGCTACAATGAGACCCCCTGCTGCAGCCAG < 41bp 0.539287872566712 0.743668928768119 NA NA prediction 0.408762112402816 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109288103 chr12:109288102 stopgain 0.080 1 20 hm7G_associated_SNPs_33821 0 0 0 0 2 DAO chr12:109288039 3'AG 109288039 Downstream 64bp 31074 chr12 109288102 109288102 1 + C T BRCA 109288103 + 109288083 109288123 41 ATGGGCTGGGGCGCTACAACGAGACCCCCTGCTGCAGCCAG ATGGGCTGGGGCGCTACAATGAGACCCCCTGCTGCAGCCAG < 41bp 0.539287872566712 0.743668928768119 NA NA prediction 0.408762112402816 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109288103 chr12:109288102 stopgain 0.080 1 20 hm7G_associated_SNPs_33821 0 0 0 0 2 DAO chr12:109288143 5'GT 109288143 Upstream 42bp 31075 chr11 118405023 118405023 1 + G T LUAD 118405024 + 118405004 118405044 41 ATGGCTCAGAACAACAGCCGGCCAGAGCTTCTGGACCCGGA ATGGCTCAGAACAACAGCCTGCCAGAGCTTCTGGACCCGGA < 41bp 0.708836347376052 0.913217004048279 NA NA prediction 0.408761313344454 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405024 chr11:118405023 nonsynonymous SNV 0.856 2 20 hm7G_associated_SNPs_33822 0 0 0 0 3 TMEM25 chr11:118404981 3'AG 118404981 Downstream 43bp 31076 chr11 118405023 118405023 1 + G T LUAD 118405024 + 118405004 118405044 41 ATGGCTCAGAACAACAGCCGGCCAGAGCTTCTGGACCCGGA ATGGCTCAGAACAACAGCCTGCCAGAGCTTCTGGACCCGGA < 41bp 0.708836347376052 0.913217004048279 NA NA prediction 0.408761313344454 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405024 chr11:118405023 nonsynonymous SNV 0.856 2 20 hm7G_associated_SNPs_33822 0 0 0 0 3 TMEM25 chr11:118404984 3'AG 118404984 Downstream 40bp 31077 chr11 118405023 118405023 1 + G T LUAD 118405024 + 118405004 118405044 41 ATGGCTCAGAACAACAGCCGGCCAGAGCTTCTGGACCCGGA ATGGCTCAGAACAACAGCCTGCCAGAGCTTCTGGACCCGGA < 41bp 0.708836347376052 0.913217004048279 NA NA prediction 0.408761313344454 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118405024 chr11:118405023 nonsynonymous SNV 0.856 2 20 hm7G_associated_SNPs_33822 0 0 0 0 3 TMEM25 chr11:118405070 5'GT 118405070 Upstream 48bp 31078 chr4 619823 619823 1 + C T UCEC 619824 + 619804 619844 41 TCGTCTTCCCACTGGACATCGGGGTCGTGGGCCACGTGGCT TCGTCTTCCCACTGGACATTGGGGTCGTGGGCCACGTGGCT < 41bp 0.53261099183995 0.736991048387237 NA NA prediction 0.408760113094574 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:619824 chr4:619823 synonymous SNV . 0 20 hm7G_associated_SNPs_33823 0 0 0 0 1 PDE6B chr4:619883 5'GT 619883 Upstream 61bp 31079 chr17 45785833 45785833 1 + G A UCEC 45785834 + 45785814 45785854 41 GGAGTTGAGTTCCCTACAGGGGAGAATCTTGAGGACTCTGT GGAGTTGAGTTCCCTACAGAGGAGAATCTTGAGGACTCTGT < 41bp 0.483998001852582 0.704378747908958 NA NA prediction 0.408757495817916 Functional Gain - TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45785834 chr17:45785833 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_33826 0 0 1 0 1 TBKBP1 chr17:45785878 5'GT 45785878 Upstream 46bp 31080 chr3 184103942 184103942 1 + G A LUAD 184103943 + 184103923 184103963 41 CCCCAGAGGGGAGCTCCGAGGGCAGGTAGGTGGCGAGTGTG CCCCAGAGGGGAGCTCCGAAGGCAGGTAGGTGGCGAGTGTG < 41bp 0.580232205083574 0.784606861246201 NA NA prediction 0.408749312325254 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184103943 chr3:184103942 nonsynonymous SNV 0.884 4 20 hm7G_associated_SNPs_33829 0 0 1 0 1 CHRD chr3:184103947 5'GT 184103947 Upstream 6bp 31081 chr10 73115934 73115934 1 + C T rs147552838 73115935 + 73115915 73115955 41 GCCCTGGCCTTCTTCCTGACGGCCACTGTCTTCCTCGTGCT GCCCTGGCCTTCTTCCTGATGGCCACTGTCTTCCTCGTGCT < 41bp 0.52574410486407 0.730118628271236 NA NA prediction 0.408749046814332 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115935 chr10:73115934 nonsynonymous SNV 0.125 1 20 hm7G_associated_SNPs_33830 0 0 0 0 3 SLC29A3 chr10:73115838 3'AG 73115838 Downstream 97bp 31082 chr10 73115934 73115934 1 + C T rs147552838 73115935 + 73115915 73115955 41 GCCCTGGCCTTCTTCCTGACGGCCACTGTCTTCCTCGTGCT GCCCTGGCCTTCTTCCTGATGGCCACTGTCTTCCTCGTGCT < 41bp 0.52574410486407 0.730118628271236 NA NA prediction 0.408749046814332 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115935 chr10:73115934 nonsynonymous SNV 0.125 1 20 hm7G_associated_SNPs_33830 0 0 0 0 3 SLC29A3 chr10:73116000 5'GT 73116000 Upstream 67bp 31083 chr10 73115934 73115934 1 + C T rs147552838 73115935 + 73115915 73115955 41 GCCCTGGCCTTCTTCCTGACGGCCACTGTCTTCCTCGTGCT GCCCTGGCCTTCTTCCTGATGGCCACTGTCTTCCTCGTGCT < 41bp 0.52574410486407 0.730118628271236 NA NA prediction 0.408749046814332 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73115935 chr10:73115934 nonsynonymous SNV 0.125 1 20 hm7G_associated_SNPs_33830 0 0 0 0 3 SLC29A3 chr10:73116006 5'GT 73116006 Upstream 73bp 31084 chr6 44119646 44119646 1 + C T BRCA 44119647 + 44119627 44119667 41 TCATTGCCTCAGCCTTTATCGGCAACGCCATGGACCTGCTG TCATTGCCTCAGCCTTTATTGGCAACGCCATGGACCTGCTG < 41bp 0.53874358539664 0.743112597685302 NA NA prediction 0.408738024577326 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44119647 chr6:44119646 synonymous SNV . 0 20 hm7G_associated_SNPs_33834 0 0 1 0 2 TMEM63B chr6:44119583 3'AG 44119583 Downstream 64bp 31085 chr6 44119646 44119646 1 + C T BRCA 44119647 + 44119627 44119667 41 TCATTGCCTCAGCCTTTATCGGCAACGCCATGGACCTGCTG TCATTGCCTCAGCCTTTATTGGCAACGCCATGGACCTGCTG < 41bp 0.53874358539664 0.743112597685302 NA NA prediction 0.408738024577326 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44119647 chr6:44119646 synonymous SNV . 0 20 hm7G_associated_SNPs_33834 0 0 1 0 2 TMEM63B chr6:44119745 5'GT 44119745 Upstream 100bp 31086 chr11 63963153 63963153 1 + C T COAD 63963154 + 63963134 63963174 41 GGATCATGACCACTCTCAGCGTCCTCCTTGGGGTCGATCTG GGATCATGACCACTCTCAGTGTCCTCCTTGGGGTCGATCTG < 41bp 0.504958860452886 0.709326859066947 NA NA prediction 0.408735997228122 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63963154 chr11:63963153 synonymous SNV . 0 20 hm7G_associated_SNPs_33835 0 0 1 0 1 STIP1 chr11:63963117 3'AG 63963117 Downstream 37bp 31087 chr19 18968184 18968184 1 + C T SARC 18968185 + 18968165 18968205 41 GTGGTGATGTGCAAGAAGGCGGCCAAGGCCGGGCTGTCACA GTGGTGATGTGCAAGAAGGTGGCCAAGGCCGGGCTGTCACA < 41bp 0.533841250099336 0.738207852345985 NA NA prediction 0.408733204493298 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18968185 chr19:18968184 nonsynonymous SNV 0.961 3 20 hm7G_associated_SNPs_33838 0 0 1 0 1 UPF1 chr19:18968129 3'AG 18968129 Downstream 56bp 31088 chr19 3532434 3532434 1 + C T BLCA 3532435 + 3532415 3532455 41 CTGCTGGTCTGGAATCACTCGAGCCTGAGCCCCGTGCAGCA CTGCTGGTCTGGAATCACTTGAGCCTGAGCCCCGTGCAGCA < 41bp 0.499261424634374 0.704362933582468 NA NA prediction 0.408725867164937 Functional Gain - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3532435 chr19:3532434 nonsynonymous SNV 0.967 1 20 hm7G_associated_SNPs_33841 0 0 1 0 1 FZR1 chr19:3532415 3'AG 3532415 Downstream 20bp 31089 chr11 63585819 63585819 1 + C T LIHC 63585820 + 63585800 63585840 41 GAGCCGGCCCAGGGGACTCCGCCCCCTCGAGCTTCCTGGTT GAGCCGGCCCAGGGGACTCTGCCCCCTCGAGCTTCCTGGTT < 41bp 0.493662910558058 0.704362265981904 NA NA prediction 0.408724531963807 Functional Gain - C11orf84 ENSG00000168005 CDS Human protein_coding chr11:63585820 chr11:63585819 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_33842 0 0 1 0 1 C11orf84 chr11:63585837 5'GT 63585837 Upstream 19bp 31090 chr2 234178708 234178708 1 + C T UCEC 234178709 + 234178689 234178729 41 CAAAGGAACCTCTACCAGTCGAACAGTAAGTAAAGATAAAT CAAAGGAACCTCTACCAGTTGAACAGTAAGTAAAGATAAAT < 41bp 0.514042078253625 0.718404172651296 NA NA prediction 0.408724188795342 Functional Gain - ATG16L1 ENSG00000085978 CDS Human protein_coding chr2:234178709 chr2:234178708 synonymous SNV . 0 20 hm7G_associated_SNPs_33843 0 0 1 0 2 ATG16L1 chr2:234178648 3'AG 234178648 Downstream 61bp 31091 chr2 234178708 234178708 1 + C T UCEC 234178709 + 234178689 234178729 41 CAAAGGAACCTCTACCAGTCGAACAGTAAGTAAAGATAAAT CAAAGGAACCTCTACCAGTTGAACAGTAAGTAAAGATAAAT < 41bp 0.514042078253625 0.718404172651296 NA NA prediction 0.408724188795342 Functional Gain - ATG16L1 ENSG00000085978 CDS Human protein_coding chr2:234178709 chr2:234178708 synonymous SNV . 0 20 hm7G_associated_SNPs_33843 0 0 1 0 2 ATG16L1 chr2:234178713 5'GT 234178713 Upstream 6bp 31092 chr19 17449382 17449382 1 + C T COAD 17449383 + 17449363 17449403 41 TTCGACCGGCGGAGGCAGGCGAGTTCACCAGACGGGCGTTC TTCGACCGGCGGAGGCAGGTGAGTTCACCAGACGGGCGTTC < 41bp 0.532145648210311 0.736506881209377 NA NA prediction 0.408722465998132 Functional Gain - GTPBP3 ENSG00000130299;ENSG00000130299 exonic;splicing Human protein_coding chr19:17449383 chr19:17449382 synonymous SNV . 0 20 hm7G_associated_SNPs_33844 0 0 1 0 1 GTPBP3 chr19:17449348 3'AG 17449348 Downstream 35bp 31093 chr6 170667354 170667354 1 + C T UCEC 170667355 + 170667335 170667375 41 GATTTGCATGCGTTTATTGCGCAGGCCTTGTGCCTCCAAGG GATTTGCATGCGTTTATTGTGCAGGCCTTGTGCCTCCAAGG < 41bp 0.54059298334326 0.744950777490086 NA NA prediction 0.408715588293651 Functional Gain - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170667355 chr6:170667354 nonsynonymous SNV 0.017 4 20 hm7G_associated_SNPs_33846 0 0 1 0 2 FAM120B chr6:170667314 3'AG 170667314 Downstream 41bp 31094 chr6 170667354 170667354 1 + C T UCEC 170667355 + 170667335 170667375 41 GATTTGCATGCGTTTATTGCGCAGGCCTTGTGCCTCCAAGG GATTTGCATGCGTTTATTGTGCAGGCCTTGTGCCTCCAAGG < 41bp 0.54059298334326 0.744950777490086 NA NA prediction 0.408715588293651 Functional Gain - FAM120B ENSG00000112584 CDS Human protein_coding chr6:170667355 chr6:170667354 nonsynonymous SNV 0.017 4 20 hm7G_associated_SNPs_33846 0 0 1 0 2 FAM120B chr6:170667406 5'GT 170667406 Upstream 53bp 31095 chr19 4945884 4945884 1 + G A STAD 4945885 + 4945865 4945905 41 ATCCTCAGGTCAGCGAGTCGGGTGTCCATCGGCCCCACGTG ATCCTCAGGTCAGCGAGTCAGGTGTCCATCGGCCCCACGTG < 41bp 0.551562307503116 0.755918339338936 NA NA prediction 0.40871206367164 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4945885 chr19:4945884 . . 0 20 hm7G_associated_SNPs_33848 0 0 0 0 2 UHRF1 chr19:4945873 3'AG 4945873 Downstream 12bp 31096 chr19 4945884 4945884 1 + G A STAD 4945885 + 4945865 4945905 41 ATCCTCAGGTCAGCGAGTCGGGTGTCCATCGGCCCCACGTG ATCCTCAGGTCAGCGAGTCAGGTGTCCATCGGCCCCACGTG < 41bp 0.551562307503116 0.755918339338936 NA NA prediction 0.40871206367164 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4945885 chr19:4945884 . . 0 20 hm7G_associated_SNPs_33848 0 0 0 0 2 UHRF1 chr19:4945977 5'GT 4945977 Upstream 94bp 31097 chr20 42168920 42168920 1 + C T UCEC 42168921 + 42168901 42168941 41 GTAGCGGGCATCTCAGCCTCGACAGTCGCCAAGTGGACCAT GTAGCGGGCATCTCAGCCTTGACAGTCGCCAAGTGGACCAT < 41bp 0.530634566594232 0.734987774016736 NA NA prediction 0.408706414845008 Functional Gain - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42168921 chr20:42168920 nonsynonymous SNV 0.369 1 20 hm7G_associated_SNPs_33852 0 0 1 0 1 L3MBTL1 chr20:42168948 5'GT 42168948 Upstream 29bp 31098 chr14 24569404 24569404 1 + G A rs17101262 24569405 + 24569385 24569425 41 TACTGTGACCTCCTGGCTGGGCAAACCCTGGAAACCTGGTA TACTGTGACCTCCTGGCTGAGCAAACCCTGGAAACCTGGTA < 41bp 0.545673432276218 0.750026398589907 NA NA prediction 0.408705932627378 Functional Gain - PCK2 ENSG00000100889 CDS Human protein_coding chr14:24569405 chr14:24569404 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_33853 0 0 1 0 1 PCK2 chr14:24569422 5'GT 24569422 Upstream 19bp 31099 chr1 241886681 241886681 1 + C T COAD 241886682 + 241886662 241886702 41 TAGGACACATGTTCAGTATCGCCGAGATCGTAACCAATGAA TAGGACACATGTTCAGTATTGCCGAGATCGTAACCAATGAA < 41bp 0.494574427091442 0.704351888643153 NA NA prediction 0.408703777286307 Functional Gain - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241886682 chr1:241886681 synonymous SNV . 0 20 hm7G_associated_SNPs_33855 0 0 0 0 2 WDR64 chr1:241886599 3'AG 241886599 Downstream 83bp 31100 chr1 241886681 241886681 1 + C T COAD 241886682 + 241886662 241886702 41 TAGGACACATGTTCAGTATCGCCGAGATCGTAACCAATGAA TAGGACACATGTTCAGTATTGCCGAGATCGTAACCAATGAA < 41bp 0.494574427091442 0.704351888643153 NA NA prediction 0.408703777286307 Functional Gain - WDR64 ENSG00000162843 CDS Human protein_coding chr1:241886682 chr1:241886681 synonymous SNV . 0 20 hm7G_associated_SNPs_33855 0 0 0 0 2 WDR64 chr1:241886738 5'GT 241886738 Upstream 58bp 31101 chr9 136404907 136404907 1 + C T rs142820588 136404908 + 136404888 136404928 41 CCCAGGAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAG CCCAGGAGTGTCCGCCGGATGGGAGGAGCTTCCGCGAGGAG < 41bp 0.5311145867195 0.735466181124199 NA NA prediction 0.408703188809398 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136404908 chr9:136404907 synonymous SNV . 0 20 hm7G_associated_SNPs_33856 0 0 1 0 2 ADAMTSL2 chr9:136404893 3'AG 136404893 Downstream 15bp 31102 chr9 136404907 136404907 1 + C T rs142820588 136404908 + 136404888 136404928 41 CCCAGGAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAG CCCAGGAGTGTCCGCCGGATGGGAGGAGCTTCCGCGAGGAG < 41bp 0.5311145867195 0.735466181124199 NA NA prediction 0.408703188809398 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136404908 chr9:136404907 synonymous SNV . 0 20 hm7G_associated_SNPs_33856 0 0 1 0 2 ADAMTSL2 chr9:136404995 5'GT 136404995 Upstream 89bp 31103 chr9 117085966 117085966 1 + C T SKCM 117085967 + 117085947 117085987 41 CTGGCAAGTGGTTTTATATCGCATCGGCCTTTCGAAACGAG CTGGCAAGTGGTTTTATATTGCATCGGCCTTTCGAAACGAG < 41bp 0.531838690350104 0.736188751621823 NA NA prediction 0.408700122543439 Functional Gain - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117085967 chr9:117085966 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33858 0 0 0 0 1 ORM1 chr9:117085943 3'AG 117085943 Downstream 24bp 31104 chr14 90459745 90459745 1 + C T CESC 90459746 + 90459726 90459766 41 GTCAGCTGAGACTTCTGGCCGCAGCAATGCCATGCCACATA GTCAGCTGAGACTTCTGGCTGCAGCAATGCCATGCCACATA < 41bp 0.522335410910439 0.72667820968211 NA NA prediction 0.408685597543341 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90459746 chr14:90459745 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_33862 0 0 1 0 2 TDP1 chr14:90459720 3'AG 90459720 Downstream 26bp 31105 chr14 90459745 90459745 1 + C T CESC 90459746 + 90459726 90459766 41 GTCAGCTGAGACTTCTGGCCGCAGCAATGCCATGCCACATA GTCAGCTGAGACTTCTGGCTGCAGCAATGCCATGCCACATA < 41bp 0.522335410910439 0.72667820968211 NA NA prediction 0.408685597543341 Functional Gain - TDP1 ENSG00000042088 CDS Human protein_coding chr14:90459746 chr14:90459745 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_33862 0 0 1 0 2 TDP1 chr14:90459827 5'GT 90459827 Upstream 83bp 31106 chr7 100189484 100189484 1 + C T UCEC 100189485 + 100189465 100189505 41 CGGCCAGATGCAGTGGAAGCGGGCCTGTCGCTATGTTGTGT CGGCCAGATGCAGTGGAAGTGGGCCTGTCGCTATGTTGTGT < 41bp 0.490707947485486 0.704342718383203 NA NA prediction 0.408685436766407 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100189485 chr7:100189484 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_33863 0 0 0 1 1 FBXO24 chr7:100189525 5'GT 100189525 Upstream 42bp 31107 chr11 8119372 8119372 1 + C T STAD 8119373 + 8119353 8119393 41 CAGCTATATCGGGAAACTGCGGTACTAGCATTCCCCCAGGA CAGCTATATCGGGAAACTGTGGTACTAGCATTCCCCCAGGA < 41bp 0.552577213185432 0.756919533180337 NA NA prediction 0.40868463998981 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8119373 chr11:8119372 nonsynonymous SNV 0.977 5 20 hm7G_associated_SNPs_33864 0 0 0 0 1 TUB chr11:8119373 5'GT 8119373 Upstream 2bp 31108 chr2 128322879 128322879 1 + C T COAD 128322880 + 128322860 128322900 41 ACTCAGTCCAGGGTGTGGACGACATGATCCGCCTGGGGGAC ACTCAGTCCAGGGTGTGGATGACATGATCCGCCTGGGGGAC < 41bp 0.48980178857897 0.704340974390849 NA NA prediction 0.408681948781697 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128322880 chr2:128322879 synonymous SNV . 0 20 hm7G_associated_SNPs_33865 0 0 0 0 2 MYO7B chr2:128322808 3'AG 128322808 Downstream 72bp 31109 chr2 128322879 128322879 1 + C T COAD 128322880 + 128322860 128322900 41 ACTCAGTCCAGGGTGTGGACGACATGATCCGCCTGGGGGAC ACTCAGTCCAGGGTGTGGATGACATGATCCGCCTGGGGGAC < 41bp 0.48980178857897 0.704340974390849 NA NA prediction 0.408681948781697 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128322880 chr2:128322879 synonymous SNV . 0 20 hm7G_associated_SNPs_33865 0 0 0 0 2 MYO7B chr2:128322960 5'GT 128322960 Upstream 82bp 31110 chr13 99093081 99093081 1 + C T UCEC 99093082 + 99093062 99093102 41 CCATGGTGGACTTCAGCATCGCAGTGGAGGTATGCAGGGGC CCATGGTGGACTTCAGCATTGCAGTGGAGGTATGCAGGGGC < 41bp 0.498537108408897 0.704338242493758 NA NA prediction 0.408676484987516 Functional Gain - FARP1 ENSG00000152767 CDS Human protein_coding chr13:99093082 chr13:99093081 synonymous SNV . 0 20 hm7G_associated_SNPs_33867 0 0 1 0 1 FARP1 chr13:99093090 5'GT 99093090 Upstream 10bp 31111 chr22 31522682 31522682 1 + C T UCEC 31522683 + 31522663 31522703 41 AGTGAGCTGTTCATGGATGCGCTAGGGCCCTTCAACTTCGT AGTGAGCTGTTCATGGATGTGCTAGGGCCCTTCAACTTCGT < 41bp 0.534074025531144 0.738410643673694 NA NA prediction 0.408673236285101 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31522683 chr22:31522682 nonsynonymous SNV 0.475 1 20 hm7G_associated_SNPs_33868 0 0 0 0 2 INPP5J chr22:31522599 3'AG 31522599 Downstream 84bp 31112 chr22 31522682 31522682 1 + C T UCEC 31522683 + 31522663 31522703 41 AGTGAGCTGTTCATGGATGCGCTAGGGCCCTTCAACTTCGT AGTGAGCTGTTCATGGATGTGCTAGGGCCCTTCAACTTCGT < 41bp 0.534074025531144 0.738410643673694 NA NA prediction 0.408673236285101 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31522683 chr22:31522682 nonsynonymous SNV 0.475 1 20 hm7G_associated_SNPs_33868 0 0 0 0 2 INPP5J chr22:31522707 5'GT 31522707 Upstream 26bp 31113 chr1 57347218 57347218 1 + C T SKCM 57347219 + 57347199 57347239 41 TGGGGAATGGAGGGAGCTTCGATATGACTCCACCTGTGAAC TGGGGAATGGAGGGAGCTTTGATATGACTCCACCTGTGAAC < 41bp 0.537304877759812 0.741640709618972 NA NA prediction 0.408671663718318 Functional Gain - C8A ENSG00000157131 CDS Human protein_coding chr1:57347219 chr1:57347218 stopgain 0.290 0 20 hm7G_associated_SNPs_33869 0 0 1 0 1 C8A chr1:57347307 5'GT 57347307 Upstream 90bp 31114 chr3 38520643 38520643 1 + C T READ 38520644 + 38520624 38520664 41 GCAGTCGTGGCAGAGTGAACGGGAGATCTTCAGCACACCTG GCAGTCGTGGCAGAGTGAATGGGAGATCTTCAGCACACCTG < 41bp 0.492829803606575 0.704334104937627 NA NA prediction 0.408668209875254 Functional Gain - ACVR2B ENSG00000114739 CDS Human protein_coding chr3:38520644 chr3:38520643 nonsynonymous SNV 0.989 1 20 hm7G_associated_SNPs_33870 0 0 1 0 1 ACVR2B chr3:38520619 3'AG 38520619 Downstream 25bp 31115 chr4 39219611 39219611 1 + C T UCEC 39219612 + 39219592 39219632 41 TTACGTTTTAGATAGAAAGCGAAATCTTGGATGCTCAAGAA TTACGTTTTAGATAGAAAGTGAAATCTTGGATGCTCAAGAA < 41bp 0.518957487232055 0.723291212312625 NA NA prediction 0.408667450161139 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39219612 chr4:39219611 nonsynonymous SNV 0.946 1 20 hm7G_associated_SNPs_33871 0 0 1 0 2 WDR19 chr4:39219603 3'AG 39219603 Downstream 9bp 31116 chr4 39219611 39219611 1 + C T UCEC 39219612 + 39219592 39219632 41 TTACGTTTTAGATAGAAAGCGAAATCTTGGATGCTCAAGAA TTACGTTTTAGATAGAAAGTGAAATCTTGGATGCTCAAGAA < 41bp 0.518957487232055 0.723291212312625 NA NA prediction 0.408667450161139 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39219612 chr4:39219611 nonsynonymous SNV 0.946 1 20 hm7G_associated_SNPs_33871 0 0 1 0 2 WDR19 chr4:39219607 3'AG 39219607 Downstream 5bp 31117 chr6 44147871 44147871 1 + G A SARC 44147872 + 44147852 44147892 41 ATGCTGACTTCCTGCTTCGGGTCTTCACCGAGAAGCACAGC ATGCTGACTTCCTGCTTCGAGTCTTCACCGAGAAGCACAGC < 41bp 0.50165170056986 0.705984600308506 NA NA prediction 0.408665799477292 Functional Gain - CAPN11 ENSG00000137225 CDS Human protein_coding chr6:44147872 chr6:44147871 synonymous SNV . 0 20 hm7G_associated_SNPs_33872 0 0 0 0 1 CAPN11 chr6:44147900 5'GT 44147900 Upstream 30bp 31118 chr3 101573448 101573448 1 + G T LUSC 101573449 + 101573429 101573469 41 CATATTGCTGTTGCCCAAGGGAGAAGGGCACTTTCCTATGT CATATTGCTGTTGCCCAAGTGAGAAGGGCACTTTCCTATGT < 41bp 0.370263694731728 0.704331776491413 NA NA prediction 0.408663552982825 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573449 chr3:101573448 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33873 0 0 1 0 2 NFKBIZ chr3:101573422 3'AG 101573422 Downstream 27bp 31119 chr3 101573448 101573448 1 + G T LUSC 101573449 + 101573429 101573469 41 CATATTGCTGTTGCCCAAGGGAGAAGGGCACTTTCCTATGT CATATTGCTGTTGCCCAAGTGAGAAGGGCACTTTCCTATGT < 41bp 0.370263694731728 0.704331776491413 NA NA prediction 0.408663552982825 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101573449 chr3:101573448 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33873 0 0 1 0 2 NFKBIZ chr3:101573527 5'GT 101573527 Upstream 80bp 31120 chr22 50537979 50537979 1 + C T COAD 50537980 + 50537960 50538000 41 TGACTTCCCTGGTGGAGGGCGCAGGCTGTATCAGTCAGACC TGACTTCCCTGGTGGAGGGTGCAGGCTGTATCAGTCAGACC < 41bp 0.546735271478244 0.751066649610156 NA NA prediction 0.408662756263825 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50537980 chr22:50537979 synonymous SNV . 0 20 hm7G_associated_SNPs_33874 0 0 0 0 1 MOV10L1 chr22:50538031 5'GT 50538031 Upstream 53bp 31121 chr1 228400285 228400285 1 - C T BLCA 228400284 - 228400264 228400304 41 CCTTCTTCCACACCGTCTCGGGCTTGGGCTCGCCGGTCACG CCTTCTTCCACACCGTCTCAGGCTTGGGCTCGCCGGTCACG < 41bp 0.563932425137444 0.768263008830012 NA NA prediction 0.408661167385137 Functional Gain - OBSCN ENSG00000154358 CDS Human protein_coding chr1:228400284 chr1:228400285 synonymous SNV . 0 20 hm7G_associated_SNPs_33875 0 0 1 0 1 OBSCN chr1:228400222 5'GT 228400222 Upstream 64bp 31122 chr16 16215990 16215990 1 + C T COAD 16215991 + 16215971 16216011 41 AGAGTGACCTGAAGGTGGACGAGAACCAGAAGGCCTATTAC AGAGTGACCTGAAGGTGGATGAGAACCAGAAGGCCTATTAC < 41bp 0.494799670192179 0.704329589548428 NA NA prediction 0.408659179096856 Functional Gain - ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16215991 chr16:16215990 synonymous SNV . 0 20 hm7G_associated_SNPs_33876 0 0 1 0 1 ABCC1 chr16:16216031 5'GT 16216031 Upstream 42bp 31123 chr8 70515465 70515465 1 + C T ESCA 70515466 + 70515446 70515486 41 AACATTGACTTGGCCCCCACGATCCTGGATATTGCTGGGCT AACATTGACTTGGCCCCCATGATCCTGGATATTGCTGGGCT < 41bp 0.532747815048425 0.737075482553523 NA NA prediction 0.408655335010197 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70515466 chr8:70515465 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_33878 0 0 0 0 1 SULF1 chr8:70515555 5'GT 70515555 Upstream 91bp 31124 chr10 11908743 11908743 1 + G A PRAD 11908744 + 11908724 11908764 41 GCAGCCAGCACCTGGCGCCGGGGAAGCCGAGGGCCTTCCAG GCAGCCAGCACCTGGCGCCAGGGAAGCCGAGGGCCTTCCAG < 41bp 0.472599439422397 0.704327575871599 NA NA prediction 0.408655151743198 Functional Gain - PROSER2 ENSG00000148426 CDS Human protein_coding chr10:11908744 chr10:11908743 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_33879 0 0 0 0 1 PROSER2 chr10:11908782 5'GT 11908782 Upstream 40bp 31125 chr1 171759716 171759716 1 + C T SKCM 171759717 + 171759697 171759737 41 AACACCACAAAGCCATGATCGCTGGCCTTGCCCTGCTGAGA AACACCACAAAGCCATGATTGCTGGCCTTGCCCTGCTGAGA < 41bp 0.511274040944232 0.715598993924472 NA NA prediction 0.40864990596048 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171759717 chr1:171759716 synonymous SNV . 0 20 hm7G_associated_SNPs_33881 0 0 1 0 1 METTL13 chr1:171759756 5'GT 171759756 Upstream 41bp 31126 chr4 154519856 154519856 1 + C T rs200199904 154519857 + 154519837 154519877 41 CACTCCGATTTAAGGTGCCCGAGTCCACGCTGATGGACTGC CACTCCGATTTAAGGTGCCTGAGTCCACGCTGATGGACTGC < 41bp 0.490631841383338 0.704323631509725 NA NA prediction 0.40864726301945 Functional Gain - TMEM131L ENSG00000121210 CDS Human protein_coding chr4:154519857 chr4:154519856 synonymous SNV . 0 20 hm7G_associated_SNPs_33882 0 0 1 0 1 TMEM131L chr4:154519884 5'GT 154519884 Upstream 29bp 31127 chr6 161494611 161494611 1 + C T ESCA 161494612 + 161494592 161494632 41 AGCCCGACTGCAACATTGACGCTTTTGAAGAGGATCTACAT AGCCCGACTGCAACATTGATGCTTTTGAAGAGGATCTACAT < 41bp 0.527077191267113 0.731398858991939 NA NA prediction 0.408643335449652 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161494612 chr6:161494611 synonymous SNV . 0 20 hm7G_associated_SNPs_33883 0 0 1 0 1 MAP3K4 chr6:161494644 5'GT 161494644 Upstream 34bp 31128 chr7 128490876 128490876 1 + G A rs376078394 128490877 + 128490857 128490897 41 GAGAGGTGCGGATGCCCTCGGGGAAGACGGCACGGCCCAAC GAGAGGTGCGGATGCCCTCAGGGAAGACGGCACGGCCCAAC < 41bp 0.483762622798136 0.704321645470458 NA NA prediction 0.408643290940916 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128490877 chr7:128490876 synonymous SNV . 0 20 hm7G_associated_SNPs_33884 1 0 1 0 1 FLNC chr7:128490857 3'AG 128490857 Downstream 20bp 31129 chr10 1170182 1170182 1 + C T COAD 1170183 + 1170163 1170203 41 TGACTTCTGCCGTGTTCACCGTGGGAGACAACGTGGTTTCA TGACTTCTGCCGTGTTCACTGTGGGAGACAACGTGGTTTCA < 41bp 0.502155776180156 0.70647695029478 NA NA prediction 0.408642348229248 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1170183 chr10:1170182 synonymous SNV . 0 20 hm7G_associated_SNPs_33885 0 0 1 0 1 WDR37 chr10:1170158 3'AG 1170158 Downstream 25bp 31130 chr12 126138151 126138151 1 + C T ESCA 126138152 + 126138132 126138172 41 ATTTTGTTCAGTGATGGTTCGGTGACACCTTTAGACATTTA ATTTTGTTCAGTGATGGTTTGGTGACACCTTTAGACATTTA < 41bp 0.500112032940436 0.704433128985977 NA NA prediction 0.408642192091081 Functional Gain - TMEM132B ENSG00000139364 CDS Human protein_coding chr12:126138152 chr12:126138151 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_33886 0 0 0 0 1 TMEM132B chr12:126138111 3'AG 126138111 Downstream 41bp 31131 chr9 127618522 127618522 1 + G A rs147162054 127618523 + 127618503 127618543 41 TCAGGGCTCTCTCTAGTCCGGCCAGATGCTGCGCCTCTTAG TCAGGGCTCTCTCTAGTCCAGCCAGATGCTGCGCCTCTTAG < 41bp 0.58410129461782 0.78842227795124 NA NA prediction 0.40864196666684 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618523 chr9:127618522 nonsynonymous SNV 0.146 5 20 hm7G_associated_SNPs_33887 0 0 0 0 2 WDR38 chr9:127618519 3'AG 127618519 Downstream 4bp 31132 chr9 127618522 127618522 1 + G A rs147162054 127618523 + 127618503 127618543 41 TCAGGGCTCTCTCTAGTCCGGCCAGATGCTGCGCCTCTTAG TCAGGGCTCTCTCTAGTCCAGCCAGATGCTGCGCCTCTTAG < 41bp 0.58410129461782 0.78842227795124 NA NA prediction 0.40864196666684 Functional Gain - WDR38 ENSG00000136918 CDS Human protein_coding chr9:127618523 chr9:127618522 nonsynonymous SNV 0.146 5 20 hm7G_associated_SNPs_33887 0 0 0 0 2 WDR38 chr9:127618599 5'GT 127618599 Upstream 78bp 31133 chr3 404984 404984 1 + C T UCEC 404985 + 404965 405005 41 TGCAGATCAACAGAACCACCGAAGAAGATGCTGGGTCTTAC TGCAGATCAACAGAACCACTGAAGAAGATGCTGGGTCTTAC < 41bp 0.501595222631799 0.705916094938597 NA NA prediction 0.408641744613595 Functional Gain - CHL1 ENSG00000134121 CDS Human protein_coding chr3:404985 chr3:404984 synonymous SNV . 0 20 hm7G_associated_SNPs_33888 0 0 1 0 2 CHL1 chr3:404900 3'AG 404900 Downstream 85bp 31134 chr3 404984 404984 1 + C T UCEC 404985 + 404965 405005 41 TGCAGATCAACAGAACCACCGAAGAAGATGCTGGGTCTTAC TGCAGATCAACAGAACCACTGAAGAAGATGCTGGGTCTTAC < 41bp 0.501595222631799 0.705916094938597 NA NA prediction 0.408641744613595 Functional Gain - CHL1 ENSG00000134121 CDS Human protein_coding chr3:404985 chr3:404984 synonymous SNV . 0 20 hm7G_associated_SNPs_33888 0 0 1 0 2 CHL1 chr3:405066 5'GT 405066 Upstream 83bp 31135 chr12 16112776 16112776 1 + C T rs34220997 16112777 + 16112757 16112797 41 TGATAGGCATTACTACAGCCGCCGTTTGTGTTTATCCCGCC TGATAGGCATTACTACAGCTGCCGTTTGTGTTTATCCCGCC < 41bp 0.52563311299542 0.729950336123748 NA NA prediction 0.408634446256656 Functional Gain - DERA ENSG00000023697 CDS Human protein_coding chr12:16112777 chr12:16112776 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33889 0 0 1 0 2 DERA chr12:16112763 3'AG 16112763 Downstream 14bp 31136 chr12 16112776 16112776 1 + C T rs34220997 16112777 + 16112757 16112797 41 TGATAGGCATTACTACAGCCGCCGTTTGTGTTTATCCCGCC TGATAGGCATTACTACAGCTGCCGTTTGTGTTTATCCCGCC < 41bp 0.52563311299542 0.729950336123748 NA NA prediction 0.408634446256656 Functional Gain - DERA ENSG00000023697 CDS Human protein_coding chr12:16112777 chr12:16112776 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_33889 0 0 1 0 2 DERA chr12:16112858 5'GT 16112858 Upstream 83bp 31137 chr19 38780794 38780794 1 + C T ACC 38780795 + 38780775 38780815 41 CGCAGTCACTGGGCCTTGCCGTGCATCCTTCCCACGCTGGT CGCAGTCACTGGGCCTTGCTGTGCATCCTTCCCACGCTGGT < 41bp 0.497689439023621 0.704317106635688 NA NA prediction 0.408634213271376 Functional Gain - SPINT2 ENSG00000167642;ENSG00000267748 CDS Human other chr19:38780795 chr19:38780794 nonsynonymous SNV 0.697 4 20 hm7G_associated_SNPs_33890 0 0 1 0 1 SPINT2 chr19:38780759 3'AG 38780759 Downstream 36bp 31138 chr21 47957397 47957397 1 + C T UCEC 47957398 + 47957378 47957418 41 ACGTGGTCAGCGTCCCCTACGCGCTGATGAAGGCGAACCCA ACGTGGTCAGCGTCCCCTATGCGCTGATGAAGGCGAACCCA < 41bp 0.524138518751794 0.728455560909959 NA NA prediction 0.408634084316329 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47957398 chr21:47957397 synonymous SNV . 0 20 hm7G_associated_SNPs_33891 0 0 0 0 2 DIP2A chr21:47957359 3'AG 47957359 Downstream 39bp 31139 chr21 47957397 47957397 1 + C T UCEC 47957398 + 47957378 47957418 41 ACGTGGTCAGCGTCCCCTACGCGCTGATGAAGGCGAACCCA ACGTGGTCAGCGTCCCCTATGCGCTGATGAAGGCGAACCCA < 41bp 0.524138518751794 0.728455560909959 NA NA prediction 0.408634084316329 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47957398 chr21:47957397 synonymous SNV . 0 20 hm7G_associated_SNPs_33891 0 0 0 0 2 DIP2A chr21:47957452 5'GT 47957452 Upstream 56bp 31140 chr19 50926143 50926143 1 + C T STAD 50926144 + 50926124 50926164 41 CCCTATGAAGCCTTCGACCCGGCAGCAGCCGCTTTTAGCCA CCCTATGAAGCCTTCGACCTGGCAGCAGCCGCTTTTAGCCA < 41bp 0.515164246051245 0.719480766033409 NA NA prediction 0.408633039964329 Functional Gain - SPIB ENSG00000142539;ENSG00000269404 CDS Human other chr19:50926144 chr19:50926143 nonsynonymous SNV 0.165 2 20 hm7G_associated_SNPs_33892 0 0 0 0 1 SPIB chr19:50926080 3'AG 50926080 Downstream 64bp 31141 chr22 31672811 31672811 1 + C T STAD 31672812 + 31672792 31672832 41 CAGGAGAGGGCCCGGGCTGCGCGGATGATGAGGGCCCAGTG CAGGAGAGGGCCCGGGCTGTGCGGATGATGAGGGCCCAGTG < 41bp 0.50255945998562 0.706875911068845 NA NA prediction 0.408632902166449 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31672812 chr22:31672811 synonymous SNV . 0 20 hm7G_associated_SNPs_33893 0 0 1 0 1 LIMK2 chr22:31672775 3'AG 31672775 Downstream 37bp 31142 chr12 56514389 56514389 1 + G T LUAD 56514390 + 56514370 56514410 41 CAACGGTACCGGGAGCAGCGGTGGAGGCCCTGGAGGTGGTG CAACGGTACCGGGAGCAGCTGTGGAGGCCCTGGAGGTGGTG < 41bp 0.690541118746231 0.894856048993043 NA NA prediction 0.408629860493626 Functional Gain - ZC3H10 ENSG00000135482 CDS Human antisense chr12:56514390 chr12:56514389 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_33895 0 0 0 0 1 ZC3H10 chr12:56514295 3'AG 56514295 Downstream 95bp 31143 chrX 48559040 48559040 1 + C T UCEC 48559041 + 48559021 48559061 41 TGTGGTACAGAAGGGTATCCGATATGACCTCTGCATCTTCC TGTGGTACAGAAGGGTATCTGATATGACCTCTGCATCTTCC < 41bp 0.492821606173922 0.704314569044252 NA NA prediction 0.408629138088504 Functional Gain - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48559041 chrX:48559040 stopgain 0.988 0 20 hm7G_associated_SNPs_33896 0 0 0 1 1 SUV39H1 chrX:48558960 3'AG 48558960 Downstream 81bp 31144 chr2 120369268 120369268 1 + C T UCEC 120369269 + 120369249 120369289 41 TTTGGATGAGGAATTTCAGCGACTTAAAACAGAAGTTAGCC TTTGGATGAGGAATTTCAGTGACTTAAAACAGAAGTTAGCC < 41bp 0.50975071214697 0.714065012077451 NA NA prediction 0.408628599860962 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120369269 chr2:120369268 stopgain 0.952 0 20 hm7G_associated_SNPs_33897 0 0 0 0 2 CFAP221 chr2:120369229 3'AG 120369229 Downstream 40bp 31145 chr2 120369268 120369268 1 + C T UCEC 120369269 + 120369249 120369289 41 TTTGGATGAGGAATTTCAGCGACTTAAAACAGAAGTTAGCC TTTGGATGAGGAATTTCAGTGACTTAAAACAGAAGTTAGCC < 41bp 0.50975071214697 0.714065012077451 NA NA prediction 0.408628599860962 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120369269 chr2:120369268 stopgain 0.952 0 20 hm7G_associated_SNPs_33897 0 0 0 0 2 CFAP221 chr2:120369318 5'GT 120369318 Upstream 51bp 31146 chr15 74623056 74623056 1 + G A SKCM 74623057 + 74623037 74623077 41 TGGATATGAAGAAACTGAGGGACAGGGTGCAGCATTTGCAG TGGATATGAAGAAACTGAGAGACAGGGTGCAGCATTTGCAG < 41bp 0.50642397860529 0.710736722664077 NA NA prediction 0.408625488117573 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74623057 chr15:74623056 synonymous SNV . 0 20 hm7G_associated_SNPs_33899 0 0 0 0 1 CCDC33 chr15:74623092 5'GT 74623092 Upstream 37bp 31147 chr10 76784752 76784752 1 + C T READ 76784753 + 76784733 76784773 41 GAAGAAAAGGGGTCGTAAACGCAGGAGGATCAACAGCAGTG GAAGAAAAGGGGTCGTAAATGCAGGAGGATCAACAGCAGTG < 41bp 0.534736866743182 0.739047735628821 NA NA prediction 0.40862173777128 Functional Gain - KAT6B ENSG00000156650 CDS Human protein_coding chr10:76784753 chr10:76784752 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33900 0 0 0 0 1 KAT6B chr10:76784716 3'AG 76784716 Downstream 37bp 31148 chr11 68133152 68133152 1 + G A UCEC 68133153 + 68133133 68133173 41 TGTGCAGCTGCAGGACAACGGCAGGACGTGTAAGGCAGGTG TGTGCAGCTGCAGGACAACAGCAGGACGTGTAAGGCAGGTG < 41bp 0.481630983734378 0.704309696476866 NA NA prediction 0.408619392953733 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68133153 chr11:68133152 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_33901 0 0 1 0 1 LRP5 chr11:68133170 5'GT 68133170 Upstream 19bp 31149 chr11 61957768 61957768 1 + G A LUAD 61957769 + 61957749 61957789 41 AAGCCACCATGAGGCTGTCGGTGTGTCTCCTGCTGCTCACG AAGCCACCATGAGGCTGTCAGTGTGTCTCCTGCTGCTCACG < 41bp 0.507546072745594 0.711855039759119 NA NA prediction 0.40861793402705 Functional Gain - SCGB1D1 ENSG00000168515 CDS Human protein_coding chr11:61957769 chr11:61957768 synonymous SNV . 0 20 hm7G_associated_SNPs_33904 0 0 0 0 1 SCGB1D1 chr11:61957811 5'GT 61957811 Upstream 44bp 31150 chr1 206623757 206623757 1 + C T SKCM 206623758 + 206623738 206623778 41 CCTCATGGAGAGACTACCTCGGTTGAAGACTCAACCCAGGA CCTCATGGAGAGACTACCTTGGTTGAAGACTCAACCCAGGA < 41bp 0.485373846813126 0.704307742486128 NA NA prediction 0.408615484972256 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206623758 chr1:206623757 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_33905 0 0 1 0 2 SRGAP2 chr1:206623731 3'AG 206623731 Downstream 27bp 31151 chr1 206623757 206623757 1 + C T SKCM 206623758 + 206623738 206623778 41 CCTCATGGAGAGACTACCTCGGTTGAAGACTCAACCCAGGA CCTCATGGAGAGACTACCTTGGTTGAAGACTCAACCCAGGA < 41bp 0.485373846813126 0.704307742486128 NA NA prediction 0.408615484972256 Functional Gain - SRGAP2 ENSG00000163486 CDS Human other chr1:206623758 chr1:206623757 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_33905 0 0 1 0 2 SRGAP2 chr1:206623810 5'GT 206623810 Upstream 54bp 31152 chr20 62694737 62694737 1 + G A UCEC 62694738 + 62694718 62694758 41 TGGTGACCAAGAAGAGCGCGGTGAGGGGCGCGGGCCGCCAG TGGTGACCAAGAAGAGCGCAGTGAGGGGCGCGGGCCGCCAG < 41bp 0.489653196106295 0.704307118978646 NA NA prediction 0.408614237957293 Functional Gain - TCEA2 ENSG00000171703 CDS Human protein_coding chr20:62694738 chr20:62694737 synonymous SNV . 0 20 hm7G_associated_SNPs_33906 0 0 1 0 1 TCEA2 chr20:62694737 5'GT 62694737 Upstream 1bp 31153 chr6 43497064 43497064 1 + G A rs1111785 43497065 + 43497045 43497085 41 CCAAGGCGAGTGGATCACGGGGTCAAGAGAGCGAGACCATC CCAAGGCGAGTGGATCACGAGGTCAAGAGAGCGAGACCATC < 41bp 0.558722826716777 0.763027103586753 NA NA prediction 0.408608553739953 Functional Gain - POLR1C ENSG00000171453 CDS Human protein_coding chr6:43497065 chr6:43497064 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_33909 0 0 0 0 1 POLR1C chr6:43496987 3'AG 43496987 Downstream 78bp 31154 chr10 45938587 45938587 1 + G A CESC 45938588 + 45938568 45938608 41 CCGAGGCCATCAAGGCCCGGGGCATGGAGAGCAAAGAAGAC CCGAGGCCATCAAGGCCCGAGGCATGGAGAGCAAAGAAGAC < 41bp 0.563626635875371 0.767926807605245 NA NA prediction 0.408600343459748 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938588 chr10:45938587 synonymous SNV . 0 20 hm7G_associated_SNPs_33911 0 0 1 0 2 ALOX5 chr10:45938582 3'AG 45938582 Downstream 6bp 31155 chr10 45938587 45938587 1 + G A CESC 45938588 + 45938568 45938608 41 CCGAGGCCATCAAGGCCCGGGGCATGGAGAGCAAAGAAGAC CCGAGGCCATCAAGGCCCGAGGCATGGAGAGCAAAGAAGAC < 41bp 0.563626635875371 0.767926807605245 NA NA prediction 0.408600343459748 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45938588 chr10:45938587 synonymous SNV . 0 20 hm7G_associated_SNPs_33911 0 0 1 0 2 ALOX5 chr10:45938664 5'GT 45938664 Upstream 78bp 31156 chr8 133848922 133848922 1 + C T COAD 133848923 + 133848903 133848943 41 TGCTCTTAATGAAATTGTGCGATGTATTTGTGAGATGGATG TGCTCTTAATGAAATTGTGTGATGTATTTGTGAGATGGATG < 41bp 0.51182774085903 0.716127384921227 NA NA prediction 0.408599288124395 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133848923 chr8:133848922 stopgain 0.997 0 20 hm7G_associated_SNPs_33912 0 0 1 0 1 PHF20L1 chr8:133848966 5'GT 133848966 Upstream 45bp 31157 chr22 42300952 42300952 1 + G A UCEC 42300953 + 42300933 42300973 41 CTGGAACACAGCCTGCGGCGGCGCACCACGCAGAGCACCAA CTGGAACACAGCCTGCGGCAGCGCACCACGCAGAGCACCAA < 41bp 0.486195912222497 0.704298806553508 NA NA prediction 0.408597613107015 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42300953 chr22:42300952 nonsynonymous SNV 0.912 2 20 hm7G_associated_SNPs_33913 0 0 0 0 2 SREBF2 chr22:42300867 3'AG 42300867 Downstream 86bp 31158 chr22 42300952 42300952 1 + G A UCEC 42300953 + 42300933 42300973 41 CTGGAACACAGCCTGCGGCGGCGCACCACGCAGAGCACCAA CTGGAACACAGCCTGCGGCAGCGCACCACGCAGAGCACCAA < 41bp 0.486195912222497 0.704298806553508 NA NA prediction 0.408597613107015 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42300953 chr22:42300952 nonsynonymous SNV 0.912 2 20 hm7G_associated_SNPs_33913 0 0 0 0 2 SREBF2 chr22:42300978 5'GT 42300978 Upstream 27bp 31159 chr17 61619671 61619671 1 + G A UCEC 61619672 + 61619652 61619692 41 AAGTCCAGTGCAGACGTGCGGGCTCTGACCTACTGCGACCT AAGTCCAGTGCAGACGTGCAGGCTCTGACCTACTGCGACCT < 41bp 0.568847278988666 0.773145905201317 NA NA prediction 0.408597252425302 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61619672 chr17:61619671 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_33915 0 0 0 0 1 KCNH6 chr17:61619602 3'AG 61619602 Downstream 70bp 31160 chr16 19693627 19693627 1 + C T rs117014682 19693628 + 19693608 19693648 41 ACACCTGGGAGGACAACAGCGATGAGAAAATCCGCATCTAC ACACCTGGGAGGACAACAGTGATGAGAAAATCCGCATCTAC < 41bp 0.543156766751674 0.747453956771895 NA NA prediction 0.408594380040441 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19693628 chr16:19693627 synonymous SNV . 0 20 hm7G_associated_SNPs_33917 0 0 0 0 2 C16orf62 chr16:19693547 3'AG 19693547 Downstream 81bp 31161 chr16 19693627 19693627 1 + C T rs117014682 19693628 + 19693608 19693648 41 ACACCTGGGAGGACAACAGCGATGAGAAAATCCGCATCTAC ACACCTGGGAGGACAACAGTGATGAGAAAATCCGCATCTAC < 41bp 0.543156766751674 0.747453956771895 NA NA prediction 0.408594380040441 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19693628 chr16:19693627 synonymous SNV . 0 20 hm7G_associated_SNPs_33917 0 0 0 0 2 C16orf62 chr16:19693712 5'GT 19693712 Upstream 86bp 31162 chr3 100365491 100365491 1 + G T HNSC 100365492 + 100365472 100365512 41 GAAGGACTGGGACACATATGGCTGTCAAAAAGACAAGGGCA GAAGGACTGGGACACATATTGCTGTCAAAAAGACAAGGGCA < 41bp 0.70452322473445 0.908816746185934 NA NA prediction 0.408587042902967 Functional Gain - ADGRG7 ENSG00000144820 CDS Human protein_coding chr3:100365492 chr3:100365491 nonsynonymous SNV 0.557 5 20 hm7G_associated_SNPs_33922 0 0 0 0 2 ADGRG7 chr3:100365413 3'AG 100365413 Downstream 79bp 31163 chr3 100365491 100365491 1 + G T HNSC 100365492 + 100365472 100365512 41 GAAGGACTGGGACACATATGGCTGTCAAAAAGACAAGGGCA GAAGGACTGGGACACATATTGCTGTCAAAAAGACAAGGGCA < 41bp 0.70452322473445 0.908816746185934 NA NA prediction 0.408587042902967 Functional Gain - ADGRG7 ENSG00000144820 CDS Human protein_coding chr3:100365492 chr3:100365491 nonsynonymous SNV 0.557 5 20 hm7G_associated_SNPs_33922 0 0 0 0 2 ADGRG7 chr3:100365568 5'GT 100365568 Upstream 78bp 31164 chrX 152808604 152808604 1 + G T COAD 152808605 + 152808585 152808625 41 TTGGAGCTGGCGGAGAGGAGGAAGAGAAGAAAGATAAGAAA TTGGAGCTGGCGGAGAGGATGAAGAGAAGAAAGATAAGAAA < 41bp 0.705547238973676 0.909839352833808 NA NA prediction 0.408584227720264 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152808605 chrX:152808604 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_33923 0 0 0 0 1 ATP2B3 chrX:152808626 5'GT 152808626 Upstream 23bp 31165 chr4 1725476 1725476 1 + C T UCEC 1725477 + 1725457 1725497 41 GACTTTTCAGACACCTCTGCGGGATCCACAGACGCACAGGA GACTTTTCAGACACCTCTGTGGGATCCACAGACGCACAGGA < 41bp 0.523181151853486 0.727471953800842 NA NA prediction 0.408581603894713 Functional Gain - TACC3 ENSG00000013810 CDS Human protein_coding chr4:1725477 chr4:1725476 nonsynonymous SNV 0.850 3 20 hm7G_associated_SNPs_33924 0 0 1 0 1 TACC3 chr4:1725455 3'AG 1725455 Downstream 22bp 31166 chr4 1803650 1803650 1 + G A UCEC 1803651 + 1803631 1803671 41 ACGTGGAGTTCCACTGCAAGGTGTACAGTGACGCACAGCCC ACGTGGAGTTCCACTGCAAAGTGTACAGTGACGCACAGCCC < 41bp 0.546326960742811 0.750615904261509 NA NA prediction 0.408577887037396 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1803651 chr4:1803650 synonymous SNV . 0 20 hm7G_associated_SNPs_33926 0 0 1 0 3 FGFR3 chr4:1803562 3'AG 1803562 Downstream 89bp 31167 chr4 1803650 1803650 1 + G A UCEC 1803651 + 1803631 1803671 41 ACGTGGAGTTCCACTGCAAGGTGTACAGTGACGCACAGCCC ACGTGGAGTTCCACTGCAAAGTGTACAGTGACGCACAGCCC < 41bp 0.546326960742811 0.750615904261509 NA NA prediction 0.408577887037396 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1803651 chr4:1803650 synonymous SNV . 0 20 hm7G_associated_SNPs_33926 0 0 1 0 3 FGFR3 chr4:1803650 5'GT 1803650 Upstream 1bp 31168 chr4 1803650 1803650 1 + G A UCEC 1803651 + 1803631 1803671 41 ACGTGGAGTTCCACTGCAAGGTGTACAGTGACGCACAGCCC ACGTGGAGTTCCACTGCAAAGTGTACAGTGACGCACAGCCC < 41bp 0.546326960742811 0.750615904261509 NA NA prediction 0.408577887037396 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1803651 chr4:1803650 synonymous SNV . 0 20 hm7G_associated_SNPs_33926 0 0 1 0 3 FGFR3 chr4:1803713 5'GT 1803713 Upstream 64bp 31169 chr9 136402628 136402628 1 + G A LIHC 136402629 + 136402609 136402649 41 CGTGTTCCCGCAGTTGCGGGGGTGGGGTGACATCCCAGGAG CGTGTTCCCGCAGTTGCGGAGGTGGGGTGACATCCCAGGAG < 41bp 0.474342980461526 0.70428799989151 NA NA prediction 0.408575999783021 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136402629 chr9:136402628 synonymous SNV . 0 20 hm7G_associated_SNPs_33928 0 0 0 0 1 ADAMTSL2 chr9:136402669 5'GT 136402669 Upstream 42bp 31170 chr5 148627447 148627447 1 + C T LGG 148627448 + 148627428 148627468 41 CCGGAGCTCCACCAGCAGCCGGGAAGCCCTGCACACAGCTG CCGGAGCTCCACCAGCAGCTGGGAAGCCCTGCACACAGCTG < 41bp 0.551711104621178 0.755998879494585 NA NA prediction 0.408575549746814 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148627448 chr5:148627447 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_33929 0 0 0 0 1 ABLIM3 chr5:148627492 5'GT 148627492 Upstream 46bp 31171 chr11 126277216 126277216 1 + C T rs2230278 126277217 + 126277197 126277237 41 TCAAGACGCCATCTGCTTACGAGCTGCCCTATGGGACCAAG TCAAGACGCCATCTGCTTATGAGCTGCCCTATGGGACCAAG < 41bp 0.552336055267014 0.756623320522229 NA NA prediction 0.408574530510429 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126277217 chr11:126277216 synonymous SNV . 0 20 hm7G_associated_SNPs_33930 1 0 0 0 2 ST3GAL4 chr11:126277147 3'AG 126277147 Downstream 70bp 31172 chr11 126277216 126277216 1 + C T rs2230278 126277217 + 126277197 126277237 41 TCAAGACGCCATCTGCTTACGAGCTGCCCTATGGGACCAAG TCAAGACGCCATCTGCTTATGAGCTGCCCTATGGGACCAAG < 41bp 0.552336055267014 0.756623320522229 NA NA prediction 0.408574530510429 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126277217 chr11:126277216 synonymous SNV . 0 20 hm7G_associated_SNPs_33930 1 0 0 0 2 ST3GAL4 chr11:126277244 5'GT 126277244 Upstream 29bp 31173 chr12 54915016 54915016 1 + C T UCEC 54915017 + 54914997 54915037 41 CTGAGCAGCGAAACCTGAGCGAGCAGGTAGACTCAGCCCTC CTGAGCAGCGAAACCTGAGTGAGCAGGTAGACTCAGCCCTC < 41bp 0.515714634857352 0.720000255596238 NA NA prediction 0.408571241477772 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54915017 chr12:54915016 synonymous SNV . 0 20 hm7G_associated_SNPs_33931 0 0 0 0 1 NCKAP1L chr12:54915022 5'GT 54915022 Upstream 7bp 31174 chr15 44120485 44120485 1 + C T UCEC 44120486 + 44120466 44120506 41 AAGCTACAACCCAAGAGAACGGCAGATGCGATGAATCTCAG AAGCTACAACCCAAGAGAATGGCAGATGCGATGAATCTCAG < 41bp 0.540326541708517 0.744611103183981 NA NA prediction 0.408569122950928 Functional Gain - WDR76 ENSG00000092470 CDS Human protein_coding chr15:44120486 chr15:44120485 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_33932 0 0 1 0 1 WDR76 chr15:44120564 5'GT 44120564 Upstream 80bp 31175 chr20 47567892 47567892 1 + C T HNSC 47567893 + 47567873 47567913 41 ACGGGCACATCACTGGCAACGCCCCTGACAGTGGAGCCCCT ACGGGCACATCACTGGCAATGCCCCTGACAGTGGAGCCCCT < 41bp 0.533360276721304 0.737642469111101 NA NA prediction 0.408564384779593 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47567893 chr20:47567892 synonymous SNV . 0 20 hm7G_associated_SNPs_33934 0 0 1 0 1 ARFGEF2 chr20:47567860 3'AG 47567860 Downstream 33bp 31176 chr9 5050796 5050796 1 + C T rs41302214 5050797 + 5050777 5050817 41 TGAGAATAGCCAAAGAAAACGATCAAACCCCACTGGCCATC TGAGAATAGCCAAAGAAAATGATCAAACCCCACTGGCCATC < 41bp 0.533574872507522 0.737856346416195 NA NA prediction 0.408562947817346 Functional Gain - JAK2 ENSG00000096968 CDS Human protein_coding chr9:5050797 chr9:5050796 synonymous SNV . 0 20 hm7G_associated_SNPs_33935 0 0 1 0 1 JAK2 chr9:5050831 5'GT 5050831 Upstream 36bp 31177 chr7 86813856 86813856 1 + C T STAD 86813857 + 86813837 86813877 41 CCGCTCAGAAAAGCAATGTCGTTCTAAATGGCTCAACTACC CCGCTCAGAAAAGCAATGTTGTTCTAAATGGCTCAACTACC < 41bp 0.496518163900049 0.704280915667015 NA NA prediction 0.408561831334029 Functional Gain - DMTF1 ENSG00000135164 CDS Human protein_coding chr7:86813857 chr7:86813856 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33937 0 0 1 1 1 DMTF1 chr7:86813941 5'GT 86813941 Upstream 86bp 31178 chr1 23234614 23234614 1 + C T UCEC 23234615 + 23234595 23234635 41 GTCGGACTTTGGGCTCTCACGCTTTCTAGAGGACGATACCT GTCGGACTTTGGGCTCTCATGCTTTCTAGAGGACGATACCT < 41bp 0.523273776645157 0.727553899318023 NA NA prediction 0.408560245345733 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23234615 chr1:23234614 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_33938 0 0 0 0 1 EPHB2 chr1:23234661 5'GT 23234661 Upstream 48bp 31179 chr9 127074825 127074825 1 + C T COAD 127074826 + 127074806 127074846 41 TCTTTTCGCTGCTCGCTGGCGGACTTCCAGATCGAAAAGAA TCTTTTCGCTGCTCGCTGGTGGACTTCCAGATCGAAAAGAA < 41bp 0.564920609676645 0.769197447204854 NA NA prediction 0.408553675056418 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127074826 chr9:127074825 nonsynonymous SNV 0.966 1 20 hm7G_associated_SNPs_33943 0 0 1 0 1 NEK6 chr9:127074788 3'AG 127074788 Downstream 38bp 31180 chr19 3282216 3282216 1 + C T UCEC 3282217 + 3282197 3282237 41 GTCACATCCAGCAGATAGGCGCCGTCAGCCTCAACGGGCTG GTCACATCCAGCAGATAGGTGCCGTCAGCCTCAACGGGCTG < 41bp 0.533103532009474 0.737380084182075 NA NA prediction 0.408553104345203 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282217 chr19:3282216 synonymous SNV . 0 20 hm7G_associated_SNPs_33944 0 0 0 0 2 CELF5 chr19:3282124 3'AG 3282124 Downstream 93bp 31181 chr19 3282216 3282216 1 + C T UCEC 3282217 + 3282197 3282237 41 GTCACATCCAGCAGATAGGCGCCGTCAGCCTCAACGGGCTG GTCACATCCAGCAGATAGGTGCCGTCAGCCTCAACGGGCTG < 41bp 0.533103532009474 0.737380084182075 NA NA prediction 0.408553104345203 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3282217 chr19:3282216 synonymous SNV . 0 20 hm7G_associated_SNPs_33944 0 0 0 0 2 CELF5 chr19:3282265 5'GT 3282265 Upstream 50bp 31182 chr4 25671332 25671332 1 + C T rs116552692 25671333 + 25671313 25671353 41 CCGTGTTGGTGCTCTTGCCCGTGGAGGTGGCCACCCATTAC CCGTGTTGGTGCTCTTGCCTGTGGAGGTGGCCACCCATTAC < 41bp 0.506364182666759 0.710640139610044 NA NA prediction 0.408551913886571 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25671333 chr4:25671332 synonymous SNV . 0 20 hm7G_associated_SNPs_33945 0 0 0 0 1 SLC34A2 chr4:25671269 3'AG 25671269 Downstream 64bp 31183 chr22 24909296 24909296 1 + C T UCEC 24909297 + 24909277 24909317 41 TTATCATTTTTCCAGCTGGCGAAGAACCATGACATGGTGGT TTATCATTTTTCCAGCTGGTGAAGAACCATGACATGGTGGT < 41bp 0.489185517288444 0.704275597121597 NA NA prediction 0.408551194243194 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24909297 chr22:24909296 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_33946 1 0 0 0 1 UPB1 chr22:24909292 3'AG 24909292 Downstream 5bp 31184 chr14 100344863 100344863 1 + G A BLCA 100344864 + 100344844 100344884 41 TCTGAACGAGTGTCTCCTGGGGGTCGAAGGGAAAGCAATGG TCTGAACGAGTGTCTCCTGAGGGTCGAAGGGAAAGCAATGG < 41bp 0.523107476623762 0.727381202149605 NA NA prediction 0.408547451051687 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100344864 chr14:100344863 nonsynonymous SNV 0.075 1 20 hm7G_associated_SNPs_33948 0 0 1 0 2 EML1 chr14:100344822 3'AG 100344822 Downstream 42bp 31185 chr14 100344863 100344863 1 + G A BLCA 100344864 + 100344844 100344884 41 TCTGAACGAGTGTCTCCTGGGGGTCGAAGGGAAAGCAATGG TCTGAACGAGTGTCTCCTGAGGGTCGAAGGGAAAGCAATGG < 41bp 0.523107476623762 0.727381202149605 NA NA prediction 0.408547451051687 Functional Gain - EML1 ENSG00000066629 CDS Human protein_coding chr14:100344864 chr14:100344863 nonsynonymous SNV 0.075 1 20 hm7G_associated_SNPs_33948 0 0 1 0 2 EML1 chr14:100344956 5'GT 100344956 Upstream 94bp 31186 chrX 57358192 57358192 1 + C T LGG 57358193 + 57358173 57358213 41 CAGTAACAAGATCTATGGCCGATCAAACAACCCATATGATT CAGTAACAAGATCTATGGCTGATCAAACAACCCATATGATT < 41bp 0.529473197007381 0.733745902880214 NA NA prediction 0.408545411745666 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57358193 chrX:57358192 stopgain 0.111 0 20 hm7G_associated_SNPs_33949 0 0 0 0 1 FAAH2 chrX:57358240 5'GT 57358240 Upstream 49bp 31187 chr7 45104153 45104153 1 + G A LUAD 45104154 + 45104134 45104174 41 AAGCTGGCCTGGAGGGACGGGGAGGATATCATCCTCAGGGT AAGCTGGCCTGGAGGGACGAGGAGGATATCATCCTCAGGGT < 41bp 0.48474801244316 0.704269325447927 NA NA prediction 0.408538650895854 Functional Gain - CCM2 ENSG00000136280 CDS Human protein_coding chr7:45104154 chr7:45104153 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33951 0 0 1 2 2 CCM2 chr7:45104062 3'AG 45104062 Downstream 92bp 31188 chr7 45104153 45104153 1 + G A LUAD 45104154 + 45104134 45104174 41 AAGCTGGCCTGGAGGGACGGGGAGGATATCATCCTCAGGGT AAGCTGGCCTGGAGGGACGAGGAGGATATCATCCTCAGGGT < 41bp 0.48474801244316 0.704269325447927 NA NA prediction 0.408538650895854 Functional Gain - CCM2 ENSG00000136280 CDS Human protein_coding chr7:45104154 chr7:45104153 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33951 0 0 1 2 2 CCM2 chr7:45104245 5'GT 45104245 Upstream 93bp 31189 chr1 201159989 201159989 1 + G A rs190231315 201159990 + 201159970 201160010 41 GCAAGCAGCAGCTGGAAACGGGGAAGAGGGAGCAGACAGGA GCAAGCAGCAGCTGGAAACAGGGAAGAGGGAGCAGACAGGA < 41bp 0.515139163882859 0.719407475097798 NA NA prediction 0.408536622429877 Functional Gain - IGFN1 ENSG00000163395 UTR5 Human protein_coding chr1:201159990 chr1:201159989 . . 0 20 hm7G_associated_SNPs_33952 0 0 0 0 1 IGFN1 chr1:201160035 5'GT 201160035 Upstream 47bp 31190 chr3 38039125 38039125 1 + C T rs369707141 38039126 + 38039106 38039146 41 GGCAGCCTGCGTGCCGCCACGCCCAGCAAGGATATCAACCA GGCAGCCTGCGTGCCGCCATGCCCAGCAAGGATATCAACCA < 41bp 0.501586986531069 0.705854117005969 NA NA prediction 0.408534260949799 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38039126 chr3:38039125 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_33953 0 0 1 0 1 VILL chr3:38039176 5'GT 38039176 Upstream 52bp 31191 chr5 7897318 7897318 1 + C T UCEC 7897319 + 7897299 7897339 41 CTTCATGGCCAGCAGGTGGCGAGAATCCTCCTCCAGGAGAA CTTCATGGCCAGCAGGTGGTGAGAATCCTCCTCCAGGAGAA < 41bp 0.512085523400892 0.71635155784711 NA NA prediction 0.408532068892435 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7897319 chr5:7897318 nonsynonymous SNV 0.126 0 20 hm7G_associated_SNPs_33954 0 0 1 0 1 MTRR chr5:7897360 5'GT 7897360 Upstream 43bp 31192 chrX 10084513 10084513 1 + C T HNSC 10084514 + 10084494 10084534 41 GCAGCTGGAAGAAGCCACCCGCTTAACATCCTACCTCCAGT GCAGCTGGAAGAAGCCACCTGCTTAACATCCTACCTCCAGT < 41bp 0.533178826466481 0.737442282813151 NA NA prediction 0.408526912693342 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10084514 chrX:10084513 nonsynonymous SNV 0.382 4 20 hm7G_associated_SNPs_33956 0 0 0 0 2 WWC3 chrX:10084458 3'AG 10084458 Downstream 56bp 31193 chrX 10084513 10084513 1 + C T HNSC 10084514 + 10084494 10084534 41 GCAGCTGGAAGAAGCCACCCGCTTAACATCCTACCTCCAGT GCAGCTGGAAGAAGCCACCTGCTTAACATCCTACCTCCAGT < 41bp 0.533178826466481 0.737442282813151 NA NA prediction 0.408526912693342 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10084514 chrX:10084513 nonsynonymous SNV 0.382 4 20 hm7G_associated_SNPs_33956 0 0 0 0 2 WWC3 chrX:10084547 5'GT 10084547 Upstream 35bp 31194 chr3 38420752 38420752 1 + G A LAML 38420753 + 38420733 38420773 41 ACAGGTTGCAGCATTCCCTGGGGATGTGGAGGTTCGAGCAC ACAGGTTGCAGCATTCCCTAGGGATGTGGAGGTTCGAGCAC < 41bp 0.486720622071919 0.704261638287615 NA NA prediction 0.408523276575231 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38420753 chr3:38420752 nonsynonymous SNV 0.854 1 20 hm7G_associated_SNPs_33958 0 0 1 0 2 XYLB chr3:38420737 3'AG 38420737 Downstream 16bp 31195 chr3 38420752 38420752 1 + G A LAML 38420753 + 38420733 38420773 41 ACAGGTTGCAGCATTCCCTGGGGATGTGGAGGTTCGAGCAC ACAGGTTGCAGCATTCCCTAGGGATGTGGAGGTTCGAGCAC < 41bp 0.486720622071919 0.704261638287615 NA NA prediction 0.408523276575231 Functional Gain - XYLB ENSG00000093217 CDS Human protein_coding chr3:38420753 chr3:38420752 nonsynonymous SNV 0.854 1 20 hm7G_associated_SNPs_33958 0 0 1 0 2 XYLB chr3:38420833 5'GT 38420833 Upstream 82bp 31196 chr22 37322096 37322096 1 + C T SKCM 37322097 + 37322077 37322117 41 GTCAGCCTGCCCCCATCCCCGCTGCGTGCCCAGGAGATGTG GTCAGCCTGCCCCCATCCCTGCTGCGTGCCCAGGAGATGTG < 41bp 0.535451458159656 0.739713038507759 NA NA prediction 0.408523160696207 Functional Gain - CSF2RB ENSG00000100368 CDS Human protein_coding chr22:37322097 chr22:37322096 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_33959 0 0 0 0 1 CSF2RB chr22:37322029 3'AG 37322029 Downstream 68bp 31197 chr10 104161010 104161010 1 + G A STAD 104161011 + 104160991 104161031 41 CTACCTCTGATAGCGACTCGGACTCTGAAGGGCCTGAGAAG CTACCTCTGATAGCGACTCAGACTCTGAAGGGCCTGAGAAG < 41bp 0.514837816327151 0.719095247741737 NA NA prediction 0.408514862829174 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104161011 chr10:104161010 synonymous SNV . 0 20 hm7G_associated_SNPs_33962 0 0 0 0 2 NFKB2 chr10:104160937 3'AG 104160937 Downstream 74bp 31198 chr10 104161010 104161010 1 + G A STAD 104161011 + 104160991 104161031 41 CTACCTCTGATAGCGACTCGGACTCTGAAGGGCCTGAGAAG CTACCTCTGATAGCGACTCAGACTCTGAAGGGCCTGAGAAG < 41bp 0.514837816327151 0.719095247741737 NA NA prediction 0.408514862829174 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104161011 chr10:104161010 synonymous SNV . 0 20 hm7G_associated_SNPs_33962 0 0 0 0 2 NFKB2 chr10:104161088 5'GT 104161088 Upstream 79bp 31199 chr19 45389419 45389419 1 + G A UCEC 45389420 + 45389400 45389440 41 TCTTCACTCTGGGGGCCTCGGAGCACAGCCCACTCAAGACC TCTTCACTCTGGGGGCCTCAGAGCACAGCCCACTCAAGACC < 41bp 0.542992870253049 0.747249439181387 NA NA prediction 0.408513137856676 Functional Gain - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389420 chr19:45389419 synonymous SNV . 0 20 hm7G_associated_SNPs_33963 0 0 0 0 2 NECTIN2 chr19:45389390 3'AG 45389390 Downstream 30bp 31200 chr19 45389419 45389419 1 + G A UCEC 45389420 + 45389400 45389440 41 TCTTCACTCTGGGGGCCTCGGAGCACAGCCCACTCAAGACC TCTTCACTCTGGGGGCCTCAGAGCACAGCCCACTCAAGACC < 41bp 0.542992870253049 0.747249439181387 NA NA prediction 0.408513137856676 Functional Gain - NECTIN2 ENSG00000130202 CDS Human protein_coding chr19:45389420 chr19:45389419 synonymous SNV . 0 20 hm7G_associated_SNPs_33963 0 0 0 0 2 NECTIN2 chr19:45389476 5'GT 45389476 Upstream 58bp 31201 chr7 99169920 99169920 1 + G T LIHC 99169921 + 99169901 99169941 41 TTCCTAAGCAGAAAATTTCGGAAGAAGTGCATTCATACAAA TTCCTAAGCAGAAAATTTCTGAAGAAGTGCATTCATACAAA < 41bp 0.481812948749395 0.704252841581736 NA NA prediction 0.408505683163472 Functional Gain - ZNF655 ENSG00000197343 CDS Human protein_coding chr7:99169921 chr7:99169920 synonymous SNV . 0 20 hm7G_associated_SNPs_33966 0 0 1 0 1 ZNF655 chr7:99169868 3'AG 99169868 Downstream 53bp 31202 chr12 109870756 109870756 1 + G A LUSC 109870757 + 109870737 109870777 41 GGCACGGGCCTCCAGCAGAGGGCGTGGAACGGCTGATCAAG GGCACGGGCCTCCAGCAGAAGGCGTGGAACGGCTGATCAAG < 41bp 0.532524902706638 0.736773185591205 NA NA prediction 0.408496565769133 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870757 chr12:109870756 synonymous SNV . 0 20 hm7G_associated_SNPs_33967 0 0 0 0 2 MYO1H chr12:109870702 3'AG 109870702 Downstream 55bp 31203 chr12 109870756 109870756 1 + G A LUSC 109870757 + 109870737 109870777 41 GGCACGGGCCTCCAGCAGAGGGCGTGGAACGGCTGATCAAG GGCACGGGCCTCCAGCAGAAGGCGTGGAACGGCTGATCAAG < 41bp 0.532524902706638 0.736773185591205 NA NA prediction 0.408496565769133 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109870757 chr12:109870756 synonymous SNV . 0 20 hm7G_associated_SNPs_33967 0 0 0 0 2 MYO1H chr12:109870815 5'GT 109870815 Upstream 60bp 31204 chr1 17296320 17296320 1 + G A rs150925029 17296321 + 17296301 17296341 41 CAGGCATTATCTGAGGCACGGAAGCAGAGCAGCTCCCTGGG CAGGCATTATCTGAGGCACAGAAGCAGAGCAGCTCCCTGGG < 41bp 0.503266748853021 0.707513363135044 NA NA prediction 0.408493228564045 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17296321 chr1:17296320 nonsynonymous SNV 0.598 3 20 hm7G_associated_SNPs_33969 0 0 0 0 1 CROCC chr1:17296280 3'AG 17296280 Downstream 41bp 31205 chr12 109880027 109880027 1 + G T UCEC 109880028 + 109880008 109880048 41 GGTTCCCTCTCTAGATGAAGGAGACATTAATCCGAAAGTGC GGTTCCCTCTCTAGATGAATGAGACATTAATCCGAAAGTGC < 41bp 0.372206682398948 0.704246138249965 NA NA prediction 0.40849227649993 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109880028 chr12:109880027 stopgain 0.613 0 20 hm7G_associated_SNPs_33970 0 0 0 0 2 MYO1H chr12:109880022 3'AG 109880022 Downstream 6bp 31206 chr12 109880027 109880027 1 + G T UCEC 109880028 + 109880008 109880048 41 GGTTCCCTCTCTAGATGAAGGAGACATTAATCCGAAAGTGC GGTTCCCTCTCTAGATGAATGAGACATTAATCCGAAAGTGC < 41bp 0.372206682398948 0.704246138249965 NA NA prediction 0.40849227649993 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109880028 chr12:109880027 stopgain 0.613 0 20 hm7G_associated_SNPs_33970 0 0 0 0 2 MYO1H chr12:109880077 5'GT 109880077 Upstream 51bp 31207 chr9 97203311 97203311 1 + C T STAD 97203312 + 97203292 97203332 41 TCTGGAGTCTTCTCGGTCACGTTTTCTGTTATATTTGCCTA TCTGGAGTCTTCTCGGTCATGTTTTCTGTTATATTTGCCTA < 41bp 0.499112806195117 0.704245595952174 NA NA prediction 0.408491191904347 Functional Gain - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97203312 chr9:97203311 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_33971 0 0 1 0 2 MFSD14B chr9:97203267 3'AG 97203267 Downstream 45bp 31208 chr9 97203311 97203311 1 + C T STAD 97203312 + 97203292 97203332 41 TCTGGAGTCTTCTCGGTCACGTTTTCTGTTATATTTGCCTA TCTGGAGTCTTCTCGGTCATGTTTTCTGTTATATTTGCCTA < 41bp 0.499112806195117 0.704245595952174 NA NA prediction 0.408491191904347 Functional Gain - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97203312 chr9:97203311 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_33971 0 0 1 0 2 MFSD14B chr9:97203381 5'GT 97203381 Upstream 71bp 31209 chr12 58111685 58111685 1 + C T UCEC 58111686 + 58111666 58111706 41 CGTGCAGGTCAAAGTCATTCGAAGCCCTGCGGATTTGATTC CGTGCAGGTCAAAGTCATTTGAAGCCCTGCGGATTTGATTC < 41bp 0.520011327880222 0.724254904196321 NA NA prediction 0.408487152632198 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58111686 chr12:58111685 stopgain 1.000 1 20 hm7G_associated_SNPs_33972 0 0 1 0 2 OS9 chr12:58111653 3'AG 58111653 Downstream 33bp 31210 chr12 58111685 58111685 1 + C T UCEC 58111686 + 58111666 58111706 41 CGTGCAGGTCAAAGTCATTCGAAGCCCTGCGGATTTGATTC CGTGCAGGTCAAAGTCATTTGAAGCCCTGCGGATTTGATTC < 41bp 0.520011327880222 0.724254904196321 NA NA prediction 0.408487152632198 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58111686 chr12:58111685 stopgain 1.000 1 20 hm7G_associated_SNPs_33972 0 0 1 0 2 OS9 chr12:58111741 5'GT 58111741 Upstream 57bp 31211 chr19 18976928 18976928 1 + C T UCEC 18976929 + 18976909 18976949 41 CTCCACGTACCAGGGAGAGCGGGCTTACCAGCATGGCGGGG CTCCACGTACCAGGGAGAGTGGGCTTACCAGCATGGCGGGG < 41bp 0.521510171584646 0.725753437967242 NA NA prediction 0.408486532765193 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18976929 chr19:18976928 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_33973 0 0 1 0 1 UPF1 chr19:18976853 3'AG 18976853 Downstream 76bp 31212 chr1 166581733 166581733 1 + G T rs76677462 166581734 + 166581714 166581754 41 AAAAGCGATTGCTGTGATTGGAGCTGGAATTAGCGGACTGG AAAAGCGATTGCTGTGATTTGAGCTGGAATTAGCGGACTGG < 41bp 0.623610333105457 0.827851471144995 NA NA prediction 0.408482276079076 Functional Gain - FMO9P ENSG00000215834 ncRNA_exonic Human transcribed_unitary_pseudogene chr1:166581734 chr1:166581733 . . 0 20 hm7G_associated_SNPs_33975 0 0 0 0 1 FMO9P chr1:166581697 3'AG 166581697 Downstream 37bp 31213 chr8 1581003 1581003 1 + C T COAD 1581004 + 1580984 1581024 41 TGATTGCAGGTGAGCGAGGCGGAGATCAATGGGCAATTCGA TGATTGCAGGTGAGCGAGGTGGAGATCAATGGGCAATTCGA < 41bp 0.537133125627158 0.741373289705637 NA NA prediction 0.408480328156957 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1581004 chr8:1581003 nonsynonymous SNV 0.194 2 20 hm7G_associated_SNPs_33976 0 0 0 0 1 DLGAP2 chr8:1580993 3'AG 1580993 Downstream 11bp 31214 chr19 54401306 54401306 1 + C T COAD 54401307 + 54401287 54401327 41 CTTCGGGGCGAGTCCAGGACGCCTGCACATCTCCGACTTCA CTTCGGGGCGAGTCCAGGATGCCTGCACATCTCCGACTTCA < 41bp 0.542404357601808 0.746644123394153 NA NA prediction 0.408479531584691 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401307 chr19:54401306 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_33977 0 0 0 0 2 PRKCG chr19:54401213 3'AG 54401213 Downstream 94bp 31215 chr19 54401306 54401306 1 + C T COAD 54401307 + 54401287 54401327 41 CTTCGGGGCGAGTCCAGGACGCCTGCACATCTCCGACTTCA CTTCGGGGCGAGTCCAGGATGCCTGCACATCTCCGACTTCA < 41bp 0.542404357601808 0.746644123394153 NA NA prediction 0.408479531584691 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54401307 chr19:54401306 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_33977 0 0 0 0 2 PRKCG chr19:54401365 5'GT 54401365 Upstream 60bp 31216 chr1 45268753 45268753 1 + C T UCEC 45268754 + 45268734 45268774 41 CTGCCCGGCAGCTCCTGGCCGCCATCCTTCGGGCCTCACCC CTGCCCGGCAGCTCCTGGCTGCCATCCTTCGGGCCTCACCC < 41bp 0.494640015197954 0.704233164176411 NA NA prediction 0.408466328352822 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45268754 chr1:45268753 synonymous SNV . 0 20 hm7G_associated_SNPs_33981 0 0 0 0 1 PLK3 chr1:45268825 5'GT 45268825 Upstream 73bp 31217 chr22 24562616 24562616 1 + C T COAD 24562617 + 24562597 24562637 41 TTCTTTGTAGGGGTCAGAACGCCCAGGGCCCAAGGTCTGTG TTCTTTGTAGGGGTCAGAATGCCCAGGGCCCAAGGTCTGTG < 41bp 0.507940993290832 0.71217406420439 NA NA prediction 0.408466141827116 Functional Gain - CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24562617 chr22:24562616 nonsynonymous SNV 0.873 1 20 hm7G_associated_SNPs_33982 0 0 1 0 1 CABIN1 chr22:24562607 3'AG 24562607 Downstream 10bp 31218 chr19 38894072 38894072 1 + G A UCEC 38894073 + 38894053 38894093 41 GGCGGAGCTGGCGACGCTGGGCGCCCTCGAGCAGCAGCGAG GGCGGAGCTGGCGACGCTGAGCGCCCTCGAGCAGCAGCGAG < 41bp 0.5956972142321 0.799929817556202 NA NA prediction 0.408465206648204 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38894073 chr19:38894072 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_33983 0 0 1 0 2 FAM98C chr19:38893978 3'AG 38893978 Downstream 95bp 31219 chr19 38894072 38894072 1 + G A UCEC 38894073 + 38894053 38894093 41 GGCGGAGCTGGCGACGCTGGGCGCCCTCGAGCAGCAGCGAG GGCGGAGCTGGCGACGCTGAGCGCCCTCGAGCAGCAGCGAG < 41bp 0.5956972142321 0.799929817556202 NA NA prediction 0.408465206648204 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38894073 chr19:38894072 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_33983 0 0 1 0 2 FAM98C chr19:38894126 5'GT 38894126 Upstream 55bp 31220 chr22 24919696 24919696 1 + C T SKCM 24919697 + 24919677 24919717 41 GACTGCTAGTTGCTAAGCTCGACCTAAACCTCTGCCAGCAG GACTGCTAGTTGCTAAGCTTGACCTAAACCTCTGCCAGCAG < 41bp 0.519937796101194 0.724168550412562 NA NA prediction 0.408461508622736 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919697 chr22:24919696 synonymous SNV . 0 20 hm7G_associated_SNPs_33985 1 0 0 0 1 UPB1 chr22:24919741 5'GT 24919741 Upstream 46bp 31221 chr2 242148707 242148707 1 + G A CESC 242148708 + 242148688 242148728 41 TCCCTGCCACAGGCCGGCCGGCTGTTCGACCACGGCGGCAC TCCCTGCCACAGGCCGGCCAGCTGTTCGACCACGGCGGCAC < 41bp 0.594169926364587 0.798400144494143 NA NA prediction 0.408460436259113 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242148708 chr2:242148707 nonsynonymous SNV 0.676 0 20 hm7G_associated_SNPs_33986 0 0 0 0 1 ANO7 chr2:242148700 3'AG 242148700 Downstream 8bp 31222 chr12 57858503 57858503 1 + C T STAD 57858504 + 57858484 57858524 41 AGTCAAGTTGACCAAGAAGCGGGCACTGTCCATCTCACCTC AGTCAAGTTGACCAAGAAGTGGGCACTGTCCATCTCACCTC < 41bp 0.535207986337704 0.73943717982173 NA NA prediction 0.408458386968052 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57858504 chr12:57858503 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33989 0 0 0 0 2 GLI1 chr12:57858456 3'AG 57858456 Downstream 48bp 31223 chr12 57858503 57858503 1 + C T STAD 57858504 + 57858484 57858524 41 AGTCAAGTTGACCAAGAAGCGGGCACTGTCCATCTCACCTC AGTCAAGTTGACCAAGAAGTGGGCACTGTCCATCTCACCTC < 41bp 0.535207986337704 0.73943717982173 NA NA prediction 0.408458386968052 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57858504 chr12:57858503 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_33989 0 0 0 0 2 GLI1 chr12:57858486 3'AG 57858486 Downstream 18bp 31224 chr7 296671 296671 1 + C T rs141959001 296672 + 296652 296692 41 TGAAGCAGACACCGCCCTACGACAGCAGCCACCGCATCCTG TGAAGCAGACACCGCCCTATGACAGCAGCCACCGCATCCTG < 41bp 0.521031466302391 0.725260009627412 NA NA prediction 0.408457086650042 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:296672 chr7:296671 synonymous SNV . 0 20 hm7G_associated_SNPs_33990 0 0 1 0 2 FAM20C chr7:296620 3'AG 296620 Downstream 52bp 31225 chr7 296671 296671 1 + C T rs141959001 296672 + 296652 296692 41 TGAAGCAGACACCGCCCTACGACAGCAGCCACCGCATCCTG TGAAGCAGACACCGCCCTATGACAGCAGCCACCGCATCCTG < 41bp 0.521031466302391 0.725260009627412 NA NA prediction 0.408457086650042 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:296672 chr7:296671 synonymous SNV . 0 20 hm7G_associated_SNPs_33990 0 0 1 0 2 FAM20C chr7:296729 5'GT 296729 Upstream 59bp 31226 chr14 94731745 94731745 1 + C T rs529057061 94731746 + 94731726 94731766 41 AGAGACACTAAGACACCAACGCAAAGTCTGCCCAAGAACAT AGAGACACTAAGACACCAATGCAAAGTCTGCCCAAGAACAT < 41bp 0.498200801072107 0.704228428909122 NA NA prediction 0.408456857818243 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94731746 chr14:94731745 nonsynonymous SNV 0.950 0 20 hm7G_associated_SNPs_33991 0 0 0 0 2 PPP4R4 chr14:94731724 3'AG 94731724 Downstream 22bp 31227 chr14 94731745 94731745 1 + C T rs529057061 94731746 + 94731726 94731766 41 AGAGACACTAAGACACCAACGCAAAGTCTGCCCAAGAACAT AGAGACACTAAGACACCAATGCAAAGTCTGCCCAAGAACAT < 41bp 0.498200801072107 0.704228428909122 NA NA prediction 0.408456857818243 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94731746 chr14:94731745 nonsynonymous SNV 0.950 0 20 hm7G_associated_SNPs_33991 0 0 0 0 2 PPP4R4 chr14:94731810 5'GT 94731810 Upstream 66bp 31228 chr16 75252947 75252947 1 + G A UCEC 75252948 + 75252928 75252968 41 CCTGCTTCTCCCTTGTGGGGGCCGCCTTTGGTGAGTGCTGG CCTGCTTCTCCCTTGTGGGAGCCGCCTTTGGTGAGTGCTGG < 41bp 0.551200096465955 0.755428325903741 NA NA prediction 0.408456458875572 Functional Gain - CTRB1 ENSG00000168925 CDS Human protein_coding chr16:75252948 chr16:75252947 synonymous SNV . 0 20 hm7G_associated_SNPs_33992 0 0 0 0 1 CTRB1 chr16:75252957 5'GT 75252957 Upstream 11bp 31229 chr20 32376748 32376748 1 + C T rs34260449 32376749 + 32376729 32376769 41 AGAGACACATGTTGATCCACGAGCCCTTCAAGAAATACAAA AGAGACACATGTTGATCCATGAGCCCTTCAAGAAATACAAA < 41bp 0.521603443959651 0.725829543121941 NA NA prediction 0.408452198324581 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32376749 chr20:32376748 synonymous SNV . 0 20 hm7G_associated_SNPs_33994 0 0 0 0 2 ZNF341 chr20:32376669 3'AG 32376669 Downstream 80bp 31230 chr20 32376748 32376748 1 + C T rs34260449 32376749 + 32376729 32376769 41 AGAGACACATGTTGATCCACGAGCCCTTCAAGAAATACAAA AGAGACACATGTTGATCCATGAGCCCTTCAAGAAATACAAA < 41bp 0.521603443959651 0.725829543121941 NA NA prediction 0.408452198324581 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32376749 chr20:32376748 synonymous SNV . 0 20 hm7G_associated_SNPs_33994 0 0 0 0 2 ZNF341 chr20:32376780 5'GT 32376780 Upstream 33bp 31231 chr1 46977754 46977754 1 + G A SKCM 46977755 + 46977735 46977775 41 ATCACTCCTGTGGCCCCAGGGGGTGGCCTCCTGGGCCCCTC ATCACTCCTGTGGCCCCAGAGGGTGGCCTCCTGGGCCCCTC < 41bp 0.558519050852843 0.762744295478849 NA NA prediction 0.408450489252011 Functional Gain - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46977755 chr1:46977754 nonsynonymous SNV 0.886 2 20 hm7G_associated_SNPs_33995 0 0 0 0 1 DMBX1 chr1:46977715 3'AG 46977715 Downstream 40bp 31232 chr16 57712181 57712181 1 + C T GBM 57712182 + 57712162 57712202 41 AGGCAACAGGTCTGTGGTCCGCTTGGCCGTCACCATTCTGG AGGCAACAGGTCTGTGGTCTGCTTGGCCGTCACCATTCTGG < 41bp 0.492397631944782 0.704222018645449 NA NA prediction 0.408444037290898 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57712182 chr16:57712181 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_33998 0 0 0 0 2 ADGRG3 chr16:57712082 3'AG 57712082 Downstream 100bp 31233 chr16 57712181 57712181 1 + C T GBM 57712182 + 57712162 57712202 41 AGGCAACAGGTCTGTGGTCCGCTTGGCCGTCACCATTCTGG AGGCAACAGGTCTGTGGTCTGCTTGGCCGTCACCATTCTGG < 41bp 0.492397631944782 0.704222018645449 NA NA prediction 0.408444037290898 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57712182 chr16:57712181 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_33998 0 0 0 0 2 ADGRG3 chr16:57712228 5'GT 57712228 Upstream 48bp 31234 chr12 53670436 53670436 1 + C T STAD 53670437 + 53670417 53670457 41 AGCCTCAGTGGCTGGGACCCGGAGACCCTGGCCCTCCTGCT AGCCTCAGTGGCTGGGACCTGGAGACCCTGGCCCTCCTGCT < 41bp 0.537749459917847 0.741965204849698 NA NA prediction 0.408431489863701 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53670437 chr12:53670436 nonsynonymous SNV 0.735 0 20 hm7G_associated_SNPs_34001 0 0 1 0 1 ESPL1 chr12:53670404 3'AG 53670404 Downstream 33bp 31235 chr17 61568741 61568741 1 + C T SKCM 61568742 + 61568722 61568762 41 CTACAACGGCAAGGACTTCCGGTACATCCAGCTAGGGCTCA CTACAACGGCAAGGACTTCTGGTACATCCAGCTAGGGCTCA < 41bp 0.522765018003979 0.726980612751807 NA NA prediction 0.408431189495656 Functional Gain - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61568742 chr17:61568741 nonsynonymous SNV 0.884 4 20 hm7G_associated_SNPs_34002 0 0 0 0 1 ACE chr17:61568742 5'GT 61568742 Upstream 2bp 31236 chr6 26463516 26463516 1 + G T LUAD 26463517 + 26463497 26463537 41 AATGAGGGGCCATGAAGACGGGGGCATCCGGCTGGAGTGCA AATGAGGGGCCATGAAGACTGGGGCATCCGGCTGGAGTGCA < 41bp 0.710265947747856 0.914478855715336 NA NA prediction 0.40842581593496 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26463517 chr6:26463516 nonsynonymous SNV 0.016 3 20 hm7G_associated_SNPs_34005 0 0 1 0 1 BTN2A1 chr6:26463472 3'AG 26463472 Downstream 45bp 31237 chr11 3423899 3423899 1 + G A rs144671839 3423900 + 3423880 3423920 41 GGAGCGGGATGCTGGGAGCGGGCTGGTGATGCGCCTCCGCG GGAGCGGGATGCTGGGAGCAGGCTGGTGATGCGCCTCCGCG < 41bp 0.484475391905976 0.704212151338285 NA NA prediction 0.408424302676571 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423900 chr11:3423899 . . 0 20 hm7G_associated_SNPs_34006 0 0 0 0 2 TSSC2 chr11:3423843 3'AG 3423843 Downstream 57bp 31238 chr11 3423899 3423899 1 + G A rs144671839 3423900 + 3423880 3423920 41 GGAGCGGGATGCTGGGAGCGGGCTGGTGATGCGCCTCCGCG GGAGCGGGATGCTGGGAGCAGGCTGGTGATGCGCCTCCGCG < 41bp 0.484475391905976 0.704212151338285 NA NA prediction 0.408424302676571 Functional Gain - TSSC2 ENSG00000223756 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:3423900 chr11:3423899 . . 0 20 hm7G_associated_SNPs_34006 0 0 0 0 2 TSSC2 chr11:3423959 5'GT 3423959 Upstream 61bp 31239 chr5 82875930 82875930 1 + C T COAD 82875931 + 82875911 82875951 41 ACGTCACCTTCCAACTATCCGGTGCTTAGGAAATGGAAGAT ACGTCACCTTCCAACTATCTGGTGCTTAGGAAATGGAAGAT < 41bp 0.519191490716502 0.723400785502318 NA NA prediction 0.408418589571633 Functional Gain - VCAN ENSG00000038427 CDS Human protein_coding chr5:82875931 chr5:82875930 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34008 0 0 1 0 1 VCAN chr5:82875981 5'GT 82875981 Upstream 52bp 31240 chr17 32598168 32598168 1 + G T UCEC 32598169 + 32598149 32598189 41 TGTTGTTTCATTGCAGTTGGGATTAATACTTCAACTACCTG TGTTGTTTCATTGCAGTTGTGATTAATACTTCAACTACCTG < 41bp 0.391828645200587 0.704207429628635 NA NA prediction 0.408414859257271 Functional Gain - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598169 chr17:32598168 stopgain 0.040 0 20 hm7G_associated_SNPs_34009 0 0 0 0 1 CCL7 chr17:32598165 3'AG 32598165 Downstream 4bp 31241 chr15 69339761 69339761 1 + C T UCEC 69339762 + 69339742 69339782 41 CTTGTGCACAGTGCTACATCGATGGGCCTTATGGGACCCCC CTTGTGCACAGTGCTACATTGATGGGCCTTATGGGACCCCC < 41bp 0.494752752155604 0.704207270486306 NA NA prediction 0.408414540972612 Functional Gain - NOX5 ENSG00000255346 CDS Human protein_coding chr15:69339762 chr15:69339761 synonymous SNV . 0 20 hm7G_associated_SNPs_34010 0 0 0 0 1 NOX5 chr15:69339753 3'AG 69339753 Downstream 9bp 31242 chr17 4712420 4712420 1 + C T BLCA 4712421 + 4712401 4712441 41 CGTTGCCTATTCTCCAGCCCGAGATGCAGGCAACAGAGAGA CGTTGCCTATTCTCCAGCCTGAGATGCAGGCAACAGAGAGA < 41bp 0.524781500402735 0.728988671784495 NA NA prediction 0.408414342763522 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712421 chr17:4712420 stopgain 0.745 0 20 hm7G_associated_SNPs_34011 0 0 1 0 2 PLD2 chr17:4712395 3'AG 4712395 Downstream 26bp 31243 chr17 4712420 4712420 1 + C T BLCA 4712421 + 4712401 4712441 41 CGTTGCCTATTCTCCAGCCCGAGATGCAGGCAACAGAGAGA CGTTGCCTATTCTCCAGCCTGAGATGCAGGCAACAGAGAGA < 41bp 0.524781500402735 0.728988671784495 NA NA prediction 0.408414342763522 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712421 chr17:4712420 stopgain 0.745 0 20 hm7G_associated_SNPs_34011 0 0 1 0 2 PLD2 chr17:4712500 5'GT 4712500 Upstream 81bp 31244 chr6 44116117 44116117 1 + C T LGG 44116118 + 44116098 44116138 41 TCCACAATGAGACTATCACCGCCATGTGAGTCCCCAACTCG TCCACAATGAGACTATCACTGCCATGTGAGTCCCCAACTCG < 41bp 0.497912485984398 0.704205975255054 NA NA prediction 0.408411950510109 Functional Gain - TMEM63B ENSG00000137216 CDS Human protein_coding chr6:44116118 chr6:44116117 synonymous SNV . 0 20 hm7G_associated_SNPs_34012 0 0 1 0 1 TMEM63B chr6:44116122 5'GT 44116122 Upstream 6bp 31245 chr7 152551606 152551606 1 + C T CESC 152551607 + 152551587 152551627 41 GTACGGGCCCAGCATCTGCCGCCACAACCCCGTCTTTGGAG GTACGGGCCCAGCATCTGCTGCCACAACCCCGTCTTTGGAG < 41bp 0.520375755080719 0.724581232288353 NA NA prediction 0.408410954415268 Functional Gain - ACTR3B ENSG00000133627 CDS Human protein_coding chr7:152551607 chr7:152551606 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34014 0 0 0 0 1 ACTR3B chr7:152551543 3'AG 152551543 Downstream 64bp 31246 chr17 43322467 43322467 1 + C T UCEC 43322468 + 43322448 43322488 41 CTGCACTTCCTGGACAAGGCGGGCTCAGGTAGGAGACACAC CTGCACTTCCTGGACAAGGTGGGCTCAGGTAGGAGACACAC < 41bp 0.497534492341855 0.704203292312001 NA NA prediction 0.408406584624003 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43322468 chr17:43322467 nonsynonymous SNV 0.961 3 20 hm7G_associated_SNPs_34018 0 0 0 0 1 FMNL1 chr17:43322475 5'GT 43322475 Upstream 9bp 31247 chr19 44495784 44495784 1 + C T rs141510834 44495785 + 44495765 44495805 41 TGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACT TGCCCAGAGGAAGCTGTACTGAGATGTGATGCTGGAGAACT < 41bp 0.533999701899497 0.73820204131779 NA NA prediction 0.408404678836588 Functional Gain - ZNF155 ENSG00000204920 CDS Human protein_coding chr19:44495785 chr19:44495784 stopgain 0.957 0 20 hm7G_associated_SNPs_34020 0 0 0 0 2 ZNF155 chr19:44495700 3'AG 44495700 Downstream 85bp 31248 chr19 44495784 44495784 1 + C T rs141510834 44495785 + 44495765 44495805 41 TGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACT TGCCCAGAGGAAGCTGTACTGAGATGTGATGCTGGAGAACT < 41bp 0.533999701899497 0.73820204131779 NA NA prediction 0.408404678836588 Functional Gain - ZNF155 ENSG00000204920 CDS Human protein_coding chr19:44495785 chr19:44495784 stopgain 0.957 0 20 hm7G_associated_SNPs_34020 0 0 0 0 2 ZNF155 chr19:44495826 5'GT 44495826 Upstream 43bp 31249 chr10 131506261 131506261 1 + C T OV 131506262 + 131506242 131506282 41 TCCACCAGCCCGAGGCTATCGAAGAGTTCCCCGTGCCGGCT TCCACCAGCCCGAGGCTATTGAAGAGTTCCCCGTGCCGGCT < 41bp 0.512072886013131 0.716274426176286 NA NA prediction 0.408403080326309 Functional Gain - MGMT ENSG00000170430 CDS Human protein_coding chr10:131506262 chr10:131506261 synonymous SNV . 0 20 hm7G_associated_SNPs_34021 0 0 1 0 1 MGMT chr10:131506307 5'GT 131506307 Upstream 47bp 31250 chr8 124206355 124206355 1 + C T COAD 124206356 + 124206336 124206376 41 CGGGAGAAGTTCATCATCTCGGACTGGAGATTTGTCCTGTC CGGGAGAAGTTCATCATCTTGGACTGGAGATTTGTCCTGTC < 41bp 0.493448209063061 0.704201190260898 NA NA prediction 0.408402380521796 Functional Gain - FAM83A ENSG00000147689 CDS Human protein_coding chr8:124206356 chr8:124206355 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_34022 0 0 1 0 2 FAM83A chr8:124206264 3'AG 124206264 Downstream 92bp 31251 chr8 124206355 124206355 1 + C T COAD 124206356 + 124206336 124206376 41 CGGGAGAAGTTCATCATCTCGGACTGGAGATTTGTCCTGTC CGGGAGAAGTTCATCATCTTGGACTGGAGATTTGTCCTGTC < 41bp 0.493448209063061 0.704201190260898 NA NA prediction 0.408402380521796 Functional Gain - FAM83A ENSG00000147689 CDS Human protein_coding chr8:124206356 chr8:124206355 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_34022 0 0 1 0 2 FAM83A chr8:124206388 5'GT 124206388 Upstream 34bp 31252 chr10 101136957 101136957 1 + C T PAAD 101136958 + 101136938 101136978 41 ACTCAGTCCACATCCTCAGCGATGTGCAGTTTGTGAAGGTA ACTCAGTCCACATCCTCAGTGATGTGCAGTTTGTGAAGGTA < 41bp 0.527185946332643 0.731386715295687 NA NA prediction 0.408401537926087 Functional Gain - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101136958 chr10:101136957 synonymous SNV . 0 20 hm7G_associated_SNPs_34023 0 0 1 0 1 CNNM1 chr10:101136975 5'GT 101136975 Upstream 19bp 31253 chr3 140997202 140997202 1 + C T SKCM 140997203 + 140997183 140997223 41 GTCCACCTGATCCCGGTGTCGACTCCTAAGAATGGAATGAG GTCCACCTGATCCCGGTGTTGACTCCTAAGAATGGAATGAG < 41bp 0.544567640196015 0.74876732929912 NA NA prediction 0.40839937820621 Functional Gain - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:140997203 chr3:140997202 nonsynonymous SNV 0.477 0 20 hm7G_associated_SNPs_34024 0 0 1 0 1 PXYLP1 chr3:140997184 3'AG 140997184 Downstream 19bp 31254 chr1 206327519 206327519 1 + C T UCEC 206327520 + 206327500 206327540 41 AGCTGATTTTTGGAGGCTACGACCACTCCCATTTCTCTGGG AGCTGATTTTTGGAGGCTATGACCACTCCCATTTCTCTGGG < 41bp 0.543727459128804 0.747925850128036 NA NA prediction 0.408396781998464 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206327520 chr1:206327519 synonymous SNV . 0 20 hm7G_associated_SNPs_34025 0 0 0 0 2 CTSE chr1:206327474 3'AG 206327474 Downstream 46bp 31255 chr1 206327519 206327519 1 + C T UCEC 206327520 + 206327500 206327540 41 AGCTGATTTTTGGAGGCTACGACCACTCCCATTTCTCTGGG AGCTGATTTTTGGAGGCTATGACCACTCCCATTTCTCTGGG < 41bp 0.543727459128804 0.747925850128036 NA NA prediction 0.408396781998464 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206327520 chr1:206327519 synonymous SNV . 0 20 hm7G_associated_SNPs_34025 0 0 0 0 2 CTSE chr1:206327596 5'GT 206327596 Upstream 78bp 31256 chr6 106547402 106547402 1 + C T rs146557915 106547403 + 106547383 106547423 41 GGCTTCACTACCCTTATCCCGGAGAGCTGACAATGATGAAT GGCTTCACTACCCTTATCCTGGAGAGCTGACAATGATGAAT < 41bp 0.515953046356707 0.720150042980352 NA NA prediction 0.40839399324729 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106547403 chr6:106547402 synonymous SNV . 0 20 hm7G_associated_SNPs_34026 0 0 0 0 1 PRDM1 chr6:106547427 5'GT 106547427 Upstream 26bp 31257 chr19 42791321 42791321 1 + G A STAD 42791322 + 42791302 42791342 41 AGGGTCCGCCTCCCACCACGGAGGAGGAGGCCTCCGGCCCC AGGGTCCGCCTCCCACCACAGAGGAGGAGGCCTCCGGCCCC < 41bp 0.494507933338584 0.704195056385517 NA NA prediction 0.408390112771034 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42791322 chr19:42791321 synonymous SNV . 0 20 hm7G_associated_SNPs_34028 0 0 0 0 1 CIC chr19:42791392 5'GT 42791392 Upstream 72bp 31258 chr8 1497797 1497797 1 + C T SARC 1497798 + 1497778 1497818 41 TCGCTGAACCTGGACAAGCCGCTGCTGCACCAGGACGCCAA TCGCTGAACCTGGACAAGCTGCTGCTGCACCAGGACGCCAA < 41bp 0.542438399243634 0.746629366915784 NA NA prediction 0.408381935344299 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1497798 chr8:1497797 nonsynonymous SNV 0.737 3 20 hm7G_associated_SNPs_34031 0 0 0 0 1 DLGAP2 chr8:1497849 5'GT 1497849 Upstream 53bp 31259 chr8 27297930 27297930 1 + C T STAD 27297931 + 27297911 27297951 41 CGACCCCAGTGACCGGCCCCGCTTCACCGAGCTGGTGTGCA CGACCCCAGTGACCGGCCCTGCTTCACCGAGCTGGTGTGCA < 41bp 0.546461128037538 0.750652026745903 NA NA prediction 0.408381797416729 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27297931 chr8:27297930 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_34032 0 0 0 0 1 PTK2B chr8:27297958 5'GT 27297958 Upstream 29bp 31260 chr17 27380593 27380593 1 + G A GBM 27380594 + 27380574 27380614 41 CCAGCTCCTCCGTCCCCTGGGCATTGAGATGCCTCTCCAGG CCAGCTCCTCCGTCCCCTGAGCATTGAGATGCCTCTCCAGG < 41bp 0.561608623716186 0.765795763186373 NA NA prediction 0.408374278940374 Functional Gain - PIPOX ENSG00000179761 CDS Human protein_coding chr17:27380594 chr17:27380593 nonsynonymous SNV 0.640 4 20 hm7G_associated_SNPs_34035 0 0 1 0 1 PIPOX chr17:27380613 5'GT 27380613 Upstream 21bp 31261 chr19 1080533 1080533 1 + C T rs140570939 1080534 + 1080514 1080554 41 CGGACAGTGGGCTGGACCCCGGCCCTGGCGCAGGTGAGGGA CGGACAGTGGGCTGGACCCTGGCCCTGGCGCAGGTGAGGGA < 41bp 0.523141258579533 0.727326580513881 NA NA prediction 0.408370643868695 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080534 chr19:1080533 synonymous SNV . 0 20 hm7G_associated_SNPs_34037 0 0 1 0 2 ARHGAP45 chr19:1080463 3'AG 1080463 Downstream 71bp 31262 chr19 1080533 1080533 1 + C T rs140570939 1080534 + 1080514 1080554 41 CGGACAGTGGGCTGGACCCCGGCCCTGGCGCAGGTGAGGGA CGGACAGTGGGCTGGACCCTGGCCCTGGCGCAGGTGAGGGA < 41bp 0.523141258579533 0.727326580513881 NA NA prediction 0.408370643868695 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1080534 chr19:1080533 synonymous SNV . 0 20 hm7G_associated_SNPs_34037 0 0 1 0 2 ARHGAP45 chr19:1080546 5'GT 1080546 Upstream 14bp 31263 chr15 69011846 69011846 1 + C T UCEC 69011847 + 69011827 69011867 41 AGAAGAGTGTTGTGGTCAACGGAATAGATTTATTAGAAAAT AGAAGAGTGTTGTGGTCAATGGAATAGATTTATTAGAAAAT < 41bp 0.520952958624375 0.725137370830489 NA NA prediction 0.408368824412229 Functional Gain - CORO2B ENSG00000103647 CDS Human protein_coding chr15:69011847 chr15:69011846 synonymous SNV . 0 20 hm7G_associated_SNPs_34038 0 0 0 0 2 CORO2B chr15:69011752 3'AG 69011752 Downstream 95bp 31264 chr15 69011846 69011846 1 + C T UCEC 69011847 + 69011827 69011867 41 AGAAGAGTGTTGTGGTCAACGGAATAGATTTATTAGAAAAT AGAAGAGTGTTGTGGTCAATGGAATAGATTTATTAGAAAAT < 41bp 0.520952958624375 0.725137370830489 NA NA prediction 0.408368824412229 Functional Gain - CORO2B ENSG00000103647 CDS Human protein_coding chr15:69011847 chr15:69011846 synonymous SNV . 0 20 hm7G_associated_SNPs_34038 0 0 0 0 2 CORO2B chr15:69011891 5'GT 69011891 Upstream 46bp 31265 chr3 38042961 38042961 1 + G A BLCA 38042962 + 38042942 38042982 41 CCCAGGTGTGGTGCATCCAGGACTTACACAGGCAGCCCGTG CCCAGGTGTGGTGCATCCAAGACTTACACAGGCAGCCCGTG < 41bp 0.567225149717932 0.771408979291001 NA NA prediction 0.408367659146137 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38042962 chr3:38042961 synonymous SNV . 0 20 hm7G_associated_SNPs_34039 0 0 1 0 1 VILL chr3:38042947 3'AG 38042947 Downstream 15bp 31266 chr12 56347184 56347184 1 + C T CESC 56347185 + 56347165 56347205 41 GGAGAACCCTGGATGCAGACGCCCTGTACAGTGAGTATTGA GGAGAACCCTGGATGCAGATGCCCTGTACAGTGAGTATTGA < 41bp 0.499895316313586 0.704183559155219 NA NA prediction 0.408367118310438 Functional Gain - DGKA ENSG00000065357 CDS Human protein_coding chr12:56347185 chr12:56347184 nonsynonymous SNV 0.915 1 20 hm7G_associated_SNPs_34040 0 0 1 0 2 DGKA chr12:56347134 3'AG 56347134 Downstream 51bp 31267 chr12 56347184 56347184 1 + C T CESC 56347185 + 56347165 56347205 41 GGAGAACCCTGGATGCAGACGCCCTGTACAGTGAGTATTGA GGAGAACCCTGGATGCAGATGCCCTGTACAGTGAGTATTGA < 41bp 0.499895316313586 0.704183559155219 NA NA prediction 0.408367118310438 Functional Gain - DGKA ENSG00000065357 CDS Human protein_coding chr12:56347185 chr12:56347184 nonsynonymous SNV 0.915 1 20 hm7G_associated_SNPs_34040 0 0 1 0 2 DGKA chr12:56347194 5'GT 56347194 Upstream 11bp 31268 chr18 77464874 77464874 1 + C T rs35925235 77464875 + 77464855 77464895 41 CCAAGCTGTACGAGCTGCACGTCTTCACCTTCGGCAGCCGG CCAAGCTGTACGAGCTGCATGTCTTCACCTTCGGCAGCCGG < 41bp 0.506856633360428 0.711039956182214 NA NA prediction 0.408366645643572 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77464875 chr18:77464874 synonymous SNV . 0 20 hm7G_associated_SNPs_34041 0 0 0 0 1 CTDP1 chr18:77464917 5'GT 77464917 Upstream 44bp 31269 chr1 212788581 212788581 1 + G A UCEC 212788582 + 212788562 212788602 41 GTCAGCGACAGACCCCTCGGGGTGTCCATCACAAAAGCCGA GTCAGCGACAGACCCCTCGAGGTGTCCATCACAAAAGCCGA < 41bp 0.551457233282763 0.755639892510794 NA NA prediction 0.408365318456061 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788582 chr1:212788581 nonsynonymous SNV 0.164 0 20 hm7G_associated_SNPs_34042 0 0 1 0 2 ATF3 chr1:212788490 3'AG 212788490 Downstream 92bp 31270 chr1 212788581 212788581 1 + G A UCEC 212788582 + 212788562 212788602 41 GTCAGCGACAGACCCCTCGGGGTGTCCATCACAAAAGCCGA GTCAGCGACAGACCCCTCGAGGTGTCCATCACAAAAGCCGA < 41bp 0.551457233282763 0.755639892510794 NA NA prediction 0.408365318456061 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212788582 chr1:212788581 nonsynonymous SNV 0.164 0 20 hm7G_associated_SNPs_34042 0 0 1 0 2 ATF3 chr1:212788603 5'GT 212788603 Upstream 23bp 31271 chr10 43608350 43608350 1 + C T STAD 43608351 + 43608331 43608371 41 CCAGCACCAAGACCTGCCCCGACGGCCACTGCGATGTTGTG CCAGCACCAAGACCTGCCCTGACGGCCACTGCGATGTTGTG < 41bp 0.488394609795133 0.70418163220832 NA NA prediction 0.408363264416639 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43608351 chr10:43608350 synonymous SNV . 0 20 hm7G_associated_SNPs_34044 0 0 0 0 2 RET chr10:43608301 3'AG 43608301 Downstream 50bp 31272 chr10 43608350 43608350 1 + C T STAD 43608351 + 43608331 43608371 41 CCAGCACCAAGACCTGCCCCGACGGCCACTGCGATGTTGTG CCAGCACCAAGACCTGCCCTGACGGCCACTGCGATGTTGTG < 41bp 0.488394609795133 0.70418163220832 NA NA prediction 0.408363264416639 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43608351 chr10:43608350 synonymous SNV . 0 20 hm7G_associated_SNPs_34044 0 0 0 0 2 RET chr10:43608411 5'GT 43608411 Upstream 62bp 31273 chr1 32950787 32950787 1 + G T THYM 32950788 + 32950768 32950808 41 CAGGGGCTGCGGCGCTTCGGGCTGTGTGACAGCTGCACCTG CAGGGGCTGCGGCGCTTCGTGCTGTGTGACAGCTGCACCTG < 41bp 0.706168667410802 0.910350137453051 NA NA prediction 0.408362940084499 Functional Gain - ZBTB8B ENSG00000254553;ENSG00000273274 CDS Human other chr1:32950788 chr1:32950787 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_34045 0 0 0 0 1 ZBTB8B chr1:32950702 3'AG 32950702 Downstream 86bp 31274 chr6 27219612 27219612 1 + G A GBM 27219613 + 27219593 27219633 41 CTCAAGCAGCATTGCGGACGGAGCTGAGCGCTTGCGGGCCC CTCAAGCAGCATTGCGGACAGAGCTGAGCGCTTGCGGGCCC < 41bp 0.526077731012821 0.730256512778915 NA NA prediction 0.40835756353219 Functional Gain - PRSS16 ENSG00000112812 CDS Human protein_coding chr6:27219613 chr6:27219612 synonymous SNV . 0 20 hm7G_associated_SNPs_34048 0 0 1 0 1 PRSS16 chr6:27219529 3'AG 27219529 Downstream 84bp 31275 chr8 121160106 121160106 1 + C T GBM 121160107 + 121160087 121160127 41 GATTTTCCAGCGCAAGATGCGGTACTGGTTGCTTCCACCTT GATTTTCCAGCGCAAGATGTGGTACTGGTTGCTTCCACCTT < 41bp 0.513360920360671 0.717538659413316 NA NA prediction 0.40835547810529 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121160107 chr8:121160106 nonsynonymous SNV 0.780 1 20 hm7G_associated_SNPs_34049 0 0 0 0 2 COL14A1 chr8:121160045 3'AG 121160045 Downstream 62bp 31276 chr8 121160106 121160106 1 + C T GBM 121160107 + 121160087 121160127 41 GATTTTCCAGCGCAAGATGCGGTACTGGTTGCTTCCACCTT GATTTTCCAGCGCAAGATGTGGTACTGGTTGCTTCCACCTT < 41bp 0.513360920360671 0.717538659413316 NA NA prediction 0.40835547810529 Functional Gain - COL14A1 ENSG00000187955 CDS Human protein_coding chr8:121160107 chr8:121160106 nonsynonymous SNV 0.780 1 20 hm7G_associated_SNPs_34049 0 0 0 0 2 COL14A1 chr8:121160169 5'GT 121160169 Upstream 64bp 31277 chr7 100187667 100187667 1 + C T STAD 100187668 + 100187648 100187688 41 AAGAGGGGGAAAGGAAATCCGATTTCCATCCAGTTGTTCCC AAGAGGGGGAAAGGAAATCTGATTTCCATCCAGTTGTTCCC < 41bp 0.534113527305982 0.738289217135013 NA NA prediction 0.408351379658061 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187668 chr7:100187667 nonsynonymous SNV 0.473 1 20 hm7G_associated_SNPs_34050 0 0 0 1 2 FBXO24 chr7:100187600 3'AG 100187600 Downstream 68bp 31278 chr7 100187667 100187667 1 + C T STAD 100187668 + 100187648 100187688 41 AAGAGGGGGAAAGGAAATCCGATTTCCATCCAGTTGTTCCC AAGAGGGGGAAAGGAAATCTGATTTCCATCCAGTTGTTCCC < 41bp 0.534113527305982 0.738289217135013 NA NA prediction 0.408351379658061 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187668 chr7:100187667 nonsynonymous SNV 0.473 1 20 hm7G_associated_SNPs_34050 0 0 0 1 2 FBXO24 chr7:100187698 5'GT 100187698 Upstream 32bp 31279 chr22 40802205 40802205 1 + C T UCEC 40802206 + 40802186 40802226 41 CGGGTGCTGTTCCAGCTCACGCTGGGCATGCTGCACCTCAA CGGGTGCTGTTCCAGCTCATGCTGGGCATGCTGCACCTCAA < 41bp 0.537336681539473 0.741510696971995 NA NA prediction 0.408348030865042 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802206 chr22:40802205 nonsynonymous SNV 0.482 1 20 hm7G_associated_SNPs_34052 0 0 1 0 1 SGSM3 chr22:40802227 5'GT 40802227 Upstream 23bp 31280 chr15 84909441 84909441 1 + G A UCEC 84909442 + 84909422 84909462 41 TGGAGAGGCTGCGGGAGCTGGAGAGGCTGCGGGAGCTGGAG TGGAGAGGCTGCGGGAGCTAGAGAGGCTGCGGGAGCTGGAG < 41bp 0.518622985065202 0.72279651225806 NA NA prediction 0.408347054385717 Functional Gain - GOLGA6L4 ENSG00000184206 CDS Human protein_coding chr15:84909442 chr15:84909441 synonymous SNV . 0 20 hm7G_associated_SNPs_34053 0 0 0 0 2 GOLGA6L4 chr15:84909346 3'AG 84909346 Downstream 96bp 31281 chr15 84909441 84909441 1 + G A UCEC 84909442 + 84909422 84909462 41 TGGAGAGGCTGCGGGAGCTGGAGAGGCTGCGGGAGCTGGAG TGGAGAGGCTGCGGGAGCTAGAGAGGCTGCGGGAGCTGGAG < 41bp 0.518622985065202 0.72279651225806 NA NA prediction 0.408347054385717 Functional Gain - GOLGA6L4 ENSG00000184206 CDS Human protein_coding chr15:84909442 chr15:84909441 synonymous SNV . 0 20 hm7G_associated_SNPs_34053 0 0 0 0 2 GOLGA6L4 chr15:84909534 5'GT 84909534 Upstream 94bp 31282 chr14 73717683 73717683 1 + C T rs142500393 73717684 + 73717664 73717704 41 GTCTGCGGTGTGGGGGTGACGGCACGACCTGCTACCCCGTC GTCTGCGGTGTGGGGGTGATGGCACGACCTGCTACCCCGTC < 41bp 0.487873604137131 0.704171177860294 NA NA prediction 0.408342355720588 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73717684 chr14:73717683 synonymous SNV . 0 20 hm7G_associated_SNPs_34055 0 0 0 0 2 PAPLN chr14:73717615 3'AG 73717615 Downstream 69bp 31283 chr14 73717683 73717683 1 + C T rs142500393 73717684 + 73717664 73717704 41 GTCTGCGGTGTGGGGGTGACGGCACGACCTGCTACCCCGTC GTCTGCGGTGTGGGGGTGATGGCACGACCTGCTACCCCGTC < 41bp 0.487873604137131 0.704171177860294 NA NA prediction 0.408342355720588 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73717684 chr14:73717683 synonymous SNV . 0 20 hm7G_associated_SNPs_34055 0 0 0 0 2 PAPLN chr14:73717738 5'GT 73717738 Upstream 56bp 31284 chr11 130332082 130332082 1 + C T LUAD 130332083 + 130332063 130332103 41 CCCCGACCCTCATCCAGATCGACCGTGCCAACCCCTGGTCA CCCCGACCCTCATCCAGATTGACCGTGCCAACCCCTGGTCA < 41bp 0.491793667931903 0.704169347533457 NA NA prediction 0.408338695066913 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130332083 chr11:130332082 synonymous SNV . 0 20 hm7G_associated_SNPs_34056 0 0 0 0 1 ADAMTS15 chr11:130332149 5'GT 130332149 Upstream 68bp 31285 chr16 30495496 30495496 1 + C T rs7191097 30495497 + 30495477 30495517 41 ACAAATTTGCATCAAAACCCGCGAGCGAGTTTGTGAAAATT ACAAATTTGCATCAAAACCTGCGAGCGAGTTTGTGAAAATT < 41bp 0.513364063635152 0.717533306109842 NA NA prediction 0.408338484949381 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30495497 chr16:30495496 synonymous SNV . 0 20 hm7G_associated_SNPs_34057 0 0 0 0 1 ITGAL chr16:30495434 3'AG 30495434 Downstream 63bp 31286 chr17 3559853 3559853 1 + C T PAAD 3559854 + 3559834 3559874 41 CCTACAGTGTATTCAACATCGGCCTCCTCTGGGTGCCCTAC CCTACAGTGTATTCAACATTGGCCTCCTCTGGGTGCCCTAC < 41bp 0.523609534198139 0.727776855044699 NA NA prediction 0.40833464169312 Functional Gain - CTNS ENSG00000040531 CDS Human protein_coding chr17:3559854 chr17:3559853 synonymous SNV . 0 20 hm7G_associated_SNPs_34059 0 0 1 0 1 CTNS chr17:3559880 5'GT 3559880 Upstream 28bp 31287 chr1 1387747 1387747 1 + C T rs113110734 1387748 + 1387728 1387768 41 CACTGCTTTCCCCACAGGGCGGCTGGCACCTTGTTTGGGGA CACTGCTTTCCCCACAGGGTGGCTGGCACCTTGTTTGGGGA < 41bp 0.509121748356464 0.713287906670589 NA NA prediction 0.408332316628249 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387748 chr1:1387747 nonsynonymous SNV 0.012 3 20 hm7G_associated_SNPs_34061 0 0 0 0 2 ATAD3C chr1:1387745 3'AG 1387745 Downstream 3bp 31288 chr1 1387747 1387747 1 + C T rs113110734 1387748 + 1387728 1387768 41 CACTGCTTTCCCCACAGGGCGGCTGGCACCTTGTTTGGGGA CACTGCTTTCCCCACAGGGTGGCTGGCACCTTGTTTGGGGA < 41bp 0.509121748356464 0.713287906670589 NA NA prediction 0.408332316628249 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387748 chr1:1387747 nonsynonymous SNV 0.012 3 20 hm7G_associated_SNPs_34061 0 0 0 0 2 ATAD3C chr1:1387814 5'GT 1387814 Upstream 68bp 31289 chr13 113735558 113735558 1 + C T UCEC 113735559 + 113735539 113735579 41 CGAGCTCCTGGACACAGAACGGGCCTACGTGGAGGAGCTGC CGAGCTCCTGGACACAGAATGGGCCTACGTGGAGGAGCTGC < 41bp 0.519734377767463 0.723899809972067 NA NA prediction 0.408330864409208 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113735559 chr13:113735558 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_34062 0 0 1 0 2 MCF2L chr13:113735527 3'AG 113735527 Downstream 32bp 31290 chr13 113735558 113735558 1 + C T UCEC 113735559 + 113735539 113735579 41 CGAGCTCCTGGACACAGAACGGGCCTACGTGGAGGAGCTGC CGAGCTCCTGGACACAGAATGGGCCTACGTGGAGGAGCTGC < 41bp 0.519734377767463 0.723899809972067 NA NA prediction 0.408330864409208 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113735559 chr13:113735558 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_34062 0 0 1 0 2 MCF2L chr13:113735593 5'GT 113735593 Upstream 36bp 31291 chr21 43708133 43708133 1 + C T GBM 43708134 + 43708114 43708154 41 GAACCCTTTTCTTTGGCACCGGCCCTCTGAAGAGGTAAAGC GAACCCTTTTCTTTGGCACTGGCCCTCTGAAGAGGTAAAGC < 41bp 0.530218341814291 0.734383412920998 NA NA prediction 0.408330142213414 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43708134 chr21:43708133 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34063 0 0 0 0 2 ABCG1 chr21:43708147 5'GT 43708147 Upstream 15bp 31292 chr21 43708133 43708133 1 + C T GBM 43708134 + 43708114 43708154 41 GAACCCTTTTCTTTGGCACCGGCCCTCTGAAGAGGTAAAGC GAACCCTTTTCTTTGGCACTGGCCCTCTGAAGAGGTAAAGC < 41bp 0.530218341814291 0.734383412920998 NA NA prediction 0.408330142213414 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43708134 chr21:43708133 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34063 0 0 0 0 2 ABCG1 chr21:43708183 5'GT 43708183 Upstream 51bp 31293 chr1 32678136 32678136 1 + G A SKCM 32678137 + 32678117 32678157 41 TGTCAGCAGGGAAGGAGCTGGTAACTGGCCATTACTATGTG TGTCAGCAGGGAAGGAGCTAGTAACTGGCCATTACTATGTG < 41bp 0.519644013554476 0.723808646907621 NA NA prediction 0.408329266706289 Functional Gain - DCDC2B ENSG00000222046 CDS Human protein_coding chr1:32678137 chr1:32678136 synonymous SNV . 0 20 hm7G_associated_SNPs_34064 0 0 1 0 1 DCDC2B chr1:32678091 3'AG 32678091 Downstream 46bp 31294 chr19 50209489 50209489 1 + G A SKCM 50209490 + 50209470 50209510 41 ACATCCCGGGCCCTCCAGGGGCACGTGGGCCCAGGTGCGGA ACATCCCGGGCCCTCCAGGAGCACGTGGGCCCAGGTGCGGA < 41bp 0.486725336177222 0.704163062216529 NA NA prediction 0.408326124433058 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50209490 chr19:50209489 nonsynonymous SNV 0.052 1 20 hm7G_associated_SNPs_34066 0 0 0 0 1 CPT1C chr19:50209488 3'AG 50209488 Downstream 2bp 31295 chr11 43348116 43348116 1 + C T SKCM 43348117 + 43348097 43348137 41 AGCAGGTTCTCCCTAACCTCGGTACCTTGACTACCCCAGTG AGCAGGTTCTCCCTAACCTTGGTACCTTGACTACCCCAGTG < 41bp 0.51865408796378 0.722815520280923 NA NA prediction 0.408322864634286 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43348117 chr11:43348116 synonymous SNV . 0 20 hm7G_associated_SNPs_34067 0 0 1 0 2 API5 chr11:43348057 3'AG 43348057 Downstream 60bp 31296 chr11 43348116 43348116 1 + C T SKCM 43348117 + 43348097 43348137 41 AGCAGGTTCTCCCTAACCTCGGTACCTTGACTACCCCAGTG AGCAGGTTCTCCCTAACCTTGGTACCTTGACTACCCCAGTG < 41bp 0.51865408796378 0.722815520280923 NA NA prediction 0.408322864634286 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43348117 chr11:43348116 synonymous SNV . 0 20 hm7G_associated_SNPs_34067 0 0 1 0 2 API5 chr11:43348161 5'GT 43348161 Upstream 46bp 31297 chr6 132206079 132206079 1 + C T rs28933977 132206080 + 132206060 132206100 41 TCTTGTTTCAGTTATATGGCGCTACTTTCATGACACCCTAC TCTTGTTTCAGTTATATGGTGCTACTTTCATGACACCCTAC < 41bp 0.504953951417227 0.709115108704878 NA NA prediction 0.408322314575301 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132206080 chr6:132206079 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_34068 3 0 1 0 1 ENPP1 chr6:132206071 3'AG 132206071 Downstream 9bp 31298 chr16 1388940 1388940 1 + C T HNSC 1388941 + 1388921 1388961 41 GGAGTTCTTTGCCCACATGCGCCTCATGCTGAAGAAGGGGG GGAGTTCTTTGCCCACATGTGCCTCATGCTGAAGAAGGGGG < 41bp 0.539329943734531 0.743491078453939 NA NA prediction 0.408322269438816 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1388941 chr16:1388940 nonsynonymous SNV 0.954 3 20 hm7G_associated_SNPs_34069 0 0 0 0 2 BAIAP3 chr16:1388903 3'AG 1388903 Downstream 38bp 31299 chr16 1388940 1388940 1 + C T HNSC 1388941 + 1388921 1388961 41 GGAGTTCTTTGCCCACATGCGCCTCATGCTGAAGAAGGGGG GGAGTTCTTTGCCCACATGTGCCTCATGCTGAAGAAGGGGG < 41bp 0.539329943734531 0.743491078453939 NA NA prediction 0.408322269438816 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1388941 chr16:1388940 nonsynonymous SNV 0.954 3 20 hm7G_associated_SNPs_34069 0 0 0 0 2 BAIAP3 chr16:1388990 5'GT 1388990 Upstream 51bp 31300 chr3 16254193 16254193 1 + C T READ 16254194 + 16254174 16254214 41 CACCCTGAGGAACAGGGTTCGCATTGCTGAGACCTGGCTGG CACCCTGAGGAACAGGGTTTGCATTGCTGAGACCTGGCTGG < 41bp 0.539774058879227 0.743934668334869 NA NA prediction 0.408321218911284 Functional Gain - GALNT15 ENSG00000131386 CDS Human protein_coding chr3:16254194 chr3:16254193 nonsynonymous SNV 0.203 2 20 hm7G_associated_SNPs_34070 0 0 0 0 1 GALNT15 chr3:16254270 5'GT 16254270 Upstream 78bp 31301 chr3 108407750 108407750 1 + C T LIHC 108407751 + 108407731 108407771 41 ATCTTTCAGTTTTGCCTTGCGCTCACAAATTCCATGCTCAG ATCTTTCAGTTTTGCCTTGTGCTCACAAATTCCATGCTCAG < 41bp 0.513143244349143 0.717301781687488 NA NA prediction 0.408317074676691 Functional Gain - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108407751 chr3:108407750 synonymous SNV . 0 20 hm7G_associated_SNPs_34072 0 0 0 0 2 DZIP3 chr3:108407670 3'AG 108407670 Downstream 81bp 31302 chr3 108407750 108407750 1 + C T LIHC 108407751 + 108407731 108407771 41 ATCTTTCAGTTTTGCCTTGCGCTCACAAATTCCATGCTCAG ATCTTTCAGTTTTGCCTTGTGCTCACAAATTCCATGCTCAG < 41bp 0.513143244349143 0.717301781687488 NA NA prediction 0.408317074676691 Functional Gain - DZIP3 ENSG00000198919 CDS Human protein_coding chr3:108407751 chr3:108407750 synonymous SNV . 0 20 hm7G_associated_SNPs_34072 0 0 0 0 2 DZIP3 chr3:108407771 5'GT 108407771 Upstream 22bp 31303 chrX 100511153 100511153 1 + C T STAD 100511154 + 100511134 100511174 41 CTCCAGCCCCATCACAGACCGGGAGCCAGCCTTTGGACAGC CTCCAGCCCCATCACAGACTGGGAGCCAGCCTTTGGACAGC < 41bp 0.533351363682356 0.737508743334334 NA NA prediction 0.408314759303956 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100511154 chrX:100511153 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_34074 0 0 0 0 2 DRP2 chrX:100511107 3'AG 100511107 Downstream 47bp 31304 chrX 100511153 100511153 1 + C T STAD 100511154 + 100511134 100511174 41 CTCCAGCCCCATCACAGACCGGGAGCCAGCCTTTGGACAGC CTCCAGCCCCATCACAGACTGGGAGCCAGCCTTTGGACAGC < 41bp 0.533351363682356 0.737508743334334 NA NA prediction 0.408314759303956 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100511154 chrX:100511153 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_34074 0 0 0 0 2 DRP2 chrX:100511250 5'GT 100511250 Upstream 98bp 31305 chr1 159275806 159275806 1 + G T LGG 159275807 + 159275787 159275827 41 TCCTTCAGGCCTCTGCTGAGGTGGTGATGGAGGGCCAGCCC TCCTTCAGGCCTCTGCTGATGTGGTGATGGAGGGCCAGCCC < 41bp 0.68817276418515 0.892326869025544 NA NA prediction 0.408308209680787 Functional Gain - FCER1A ENSG00000179639 CDS Human protein_coding chr1:159275807 chr1:159275806 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_34078 0 0 0 0 1 FCER1A chr1:159275778 3'AG 159275778 Downstream 29bp 31306 chr17 19470501 19470501 1 + C T ESCA 19470502 + 19470482 19470522 41 ATGTGGTTGGCCTCCCCATCGGGATCGCGCTGATGTTTGCA ATGTGGTTGGCCTCCCCATTGGGATCGCGCTGATGTTTGCA < 41bp 0.523734865368966 0.727888596022906 NA NA prediction 0.408307461307881 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19470502 chr17:19470501 synonymous SNV . 0 20 hm7G_associated_SNPs_34079 0 0 1 0 2 SLC47A1 chr17:19470409 3'AG 19470409 Downstream 93bp 31307 chr17 19470501 19470501 1 + C T ESCA 19470502 + 19470482 19470522 41 ATGTGGTTGGCCTCCCCATCGGGATCGCGCTGATGTTTGCA ATGTGGTTGGCCTCCCCATTGGGATCGCGCTGATGTTTGCA < 41bp 0.523734865368966 0.727888596022906 NA NA prediction 0.408307461307881 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19470502 chr17:19470501 synonymous SNV . 0 20 hm7G_associated_SNPs_34079 0 0 1 0 2 SLC47A1 chr17:19470541 5'GT 19470541 Upstream 41bp 31308 chr20 29960684 29960684 1 + G T LUSC 29960685 + 29960665 29960705 41 AGTGGTGAAAAAAAATGCTGGAACAGATCAGGGCACTGCAG AGTGGTGAAAAAAAATGCTTGAACAGATCAGGGCACTGCAG < 41bp 0.684635235369428 0.888788517059887 NA NA prediction 0.408306563380918 Functional Gain - DEFB118 ENSG00000131068 CDS Human protein_coding chr20:29960685 chr20:29960684 nonsynonymous SNV 0.049 0 20 hm7G_associated_SNPs_34080 0 0 0 0 1 DEFB118 chr20:29960660 3'AG 29960660 Downstream 25bp 31309 chr19 38782538 38782538 1 + G A SKCM 38782539 + 38782519 38782559 41 TCTTCCTGGGAGCCTCCATGGTCTACCTGATCCGGGTGGCA TCTTCCTGGGAGCCTCCATAGTCTACCTGATCCGGGTGGCA < 41bp 0.536801912854336 0.740954700186955 NA NA prediction 0.408305574665238 Functional Gain - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38782539 chr19:38782538 nonsynonymous SNV 0.958 0 20 hm7G_associated_SNPs_34083 0 0 1 0 1 SPINT2 chr19:38782480 3'AG 38782480 Downstream 59bp 31310 chr12 121174915 121174915 1 + G A SKCM 121174916 + 121174896 121174936 41 CCGTGGCTGCGCCTCCACCGGAGTCATCATGAGTGTCAACA CCGTGGCTGCGCCTCCACCAGAGTCATCATGAGTGTCAACA < 41bp 0.559767077326486 0.763919207449538 NA NA prediction 0.408304260246105 Functional Gain - ACADS ENSG00000122971 CDS Human protein_coding chr12:121174916 chr12:121174915 nonsynonymous SNV 0.472 5 20 hm7G_associated_SNPs_34084 0 0 1 0 1 ACADS chr12:121174938 5'GT 121174938 Upstream 24bp 31311 chr17 25936350 25936350 1 + G A UCEC 25936351 + 25936331 25936371 41 TCTCAGGCGTGGTCCGAGAGGGACGGTGAGTTGGTCTTGAG TCTCAGGCGTGGTCCGAGAAGGACGGTGAGTTGGTCTTGAG < 41bp 0.496403853398168 0.704152019637476 NA NA prediction 0.408304039274952 Functional Gain - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25936351 chr17:25936350 synonymous SNV . 0 20 hm7G_associated_SNPs_34085 0 0 1 0 1 KSR1 chr17:25936355 5'GT 25936355 Upstream 6bp 31312 chr2 1079242 1079242 1 + C T SKCM 1079243 + 1079223 1079263 41 TGTTGTATGATGAAGAGTCCGAAAATGCCTATGACATCCGG TGTTGTATGATGAAGAGTCTGAAAATGCCTATGACATCCGG < 41bp 0.492719771427046 0.704150495618854 NA NA prediction 0.408300991237708 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1079243 chr2:1079242 synonymous SNV . 0 20 hm7G_associated_SNPs_34086 0 0 1 0 2 SNTG2 chr2:1079204 3'AG 1079204 Downstream 39bp 31313 chr2 1079242 1079242 1 + C T SKCM 1079243 + 1079223 1079263 41 TGTTGTATGATGAAGAGTCCGAAAATGCCTATGACATCCGG TGTTGTATGATGAAGAGTCTGAAAATGCCTATGACATCCGG < 41bp 0.492719771427046 0.704150495618854 NA NA prediction 0.408300991237708 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1079243 chr2:1079242 synonymous SNV . 0 20 hm7G_associated_SNPs_34086 0 0 1 0 2 SNTG2 chr2:1079341 5'GT 1079341 Upstream 100bp 31314 chrX 153549137 153549137 1 + C T LUAD 153549138 + 153549118 153549158 41 GGGCTGTGCCTCCCGTGGACGGACCATTGCTTTTGCTAGCA GGGCTGTGCCTCCCGTGGATGGACCATTGCTTTTGCTAGCA < 41bp 0.554657181972794 0.758805364842201 NA NA prediction 0.408296365738814 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153549138 chrX:153549137 nonsynonymous SNV 0.076 3 20 hm7G_associated_SNPs_34091 0 0 0 0 1 TKTL1 chrX:153549104 3'AG 153549104 Downstream 34bp 31315 chr10 99211894 99211894 1 + C T COAD 99211895 + 99211875 99211915 41 CAGGCTCCATTGTAGCTATCGCCTACCTGTGTGTCCTGCCT CAGGCTCCATTGTAGCTATTGCCTACCTGTGTGTCCTGCCT < 41bp 0.538228784595347 0.742374896031973 NA NA prediction 0.408292222873252 Functional Gain - ZDHHC16 ENSG00000171307 CDS Human protein_coding chr10:99211895 chr10:99211894 synonymous SNV . 0 20 hm7G_associated_SNPs_34094 0 0 1 0 1 ZDHHC16 chr10:99211847 3'AG 99211847 Downstream 48bp 31316 chr1 55271814 55271814 1 + G A SKCM 55271815 + 55271795 55271835 41 GGAAAGCCAGGATGCCGCCGGAGCTCATGGCTGGAACCGCG GGAAAGCCAGGATGCCGCCAGAGCTCATGGCTGGAACCGCG < 41bp 0.491917204414337 0.704146039553164 NA NA prediction 0.408292079106329 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55271815 chr1:55271814 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_34096 0 0 0 0 1 LEXM chr1:55271893 5'GT 55271893 Upstream 80bp 31317 chr6 31683290 31683290 1 + C T UCEC 31683291 + 31683271 31683311 41 CCTGCCAGGAAACCGAATGCGGTGCTACAACTGTGGTGGAA CCTGCCAGGAAACCGAATGTGGTGCTACAACTGTGGTGGAA < 41bp 0.498910254582216 0.70414497298502 NA NA prediction 0.408289945970041 Functional Gain - LY6G6D ENSG00000204424;ENSG00000244355;ENSG00000250641 CDS Human other chr6:31683291 chr6:31683290 nonsynonymous SNV 0.949 2 20 hm7G_associated_SNPs_34098 0 0 0 0 1 LY6G6D chr6:31683279 3'AG 31683279 Downstream 12bp 31318 chr12 56487628 56487628 1 + C T GBM 56487629 + 56487609 56487649 41 TGGTCAGTGCTTGTCCTGTCGAAATTATAGCCGAGGAGGTG TGGTCAGTGCTTGTCCTGTTGAAATTATAGCCGAGGAGGTG < 41bp 0.484535407483225 0.704143686327723 NA NA prediction 0.408287372655445 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56487629 chr12:56487628 stopgain 0.986 1 20 hm7G_associated_SNPs_34099 0 0 1 0 1 ERBB3 chr12:56487680 5'GT 56487680 Upstream 53bp 31319 chr16 16225674 16225674 1 + C T COAD 16225675 + 16225655 16225695 41 CAAATCCAGGAGACAGCTCCGCCCAGCAGCTGGCCCCAGGT CAAATCCAGGAGACAGCTCTGCCCAGCAGCTGGCCCCAGGT < 41bp 0.496523402374383 0.704141795263007 NA NA prediction 0.408283590526015 Functional Gain - ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16225675 chr16:16225674 nonsynonymous SNV 0.609 3 20 hm7G_associated_SNPs_34100 0 0 1 0 1 ABCC1 chr16:16225646 3'AG 16225646 Downstream 29bp 31320 chr11 10503707 10503707 1 + G A UCEC 10503708 + 10503688 10503728 41 GCCTACCACCGCTTCCCGCGGATCACATCCCAGTACCTGGG GCCTACCACCGCTTCCCGCAGATCACATCCCAGTACCTGGG < 41bp 0.490927080193818 0.704141665974715 NA NA prediction 0.408283331949429 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10503708 chr11:10503707 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_34101 0 0 0 0 2 AMPD3 chr11:10503610 3'AG 10503610 Downstream 98bp 31321 chr11 10503707 10503707 1 + G A UCEC 10503708 + 10503688 10503728 41 GCCTACCACCGCTTCCCGCGGATCACATCCCAGTACCTGGG GCCTACCACCGCTTCCCGCAGATCACATCCCAGTACCTGGG < 41bp 0.490927080193818 0.704141665974715 NA NA prediction 0.408283331949429 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10503708 chr11:10503707 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_34101 0 0 0 0 2 AMPD3 chr11:10503772 5'GT 10503772 Upstream 66bp 31322 chr12 266274 266274 1 + G A BRCA 266275 + 266255 266295 41 GCACACATCCGTGTGCAGGGGGAGGCTCAGAAGGTGGAGCG GCACACATCCGTGTGCAGGAGGAGGCTCAGAAGGTGGAGCG < 41bp 0.487924585640881 0.704141621550658 NA NA prediction 0.408283243101316 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:266275 chr12:266274 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_34102 0 0 0 0 2 IQSEC3 chr12:266191 3'AG 266191 Downstream 84bp 31323 chr12 266274 266274 1 + G A BRCA 266275 + 266255 266295 41 GCACACATCCGTGTGCAGGGGGAGGCTCAGAAGGTGGAGCG GCACACATCCGTGTGCAGGAGGAGGCTCAGAAGGTGGAGCG < 41bp 0.487924585640881 0.704141621550658 NA NA prediction 0.408283243101316 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:266275 chr12:266274 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_34102 0 0 0 0 2 IQSEC3 chr12:266313 5'GT 266313 Upstream 40bp 31324 chr1 220313567 220313567 1 + C T UCEC 220313568 + 220313548 220313588 41 TGATTTTGGAAAAGTTGTTCGGCTGTTACGGACGTTTTATA TGATTTTGGAAAAGTTGTTTGGCTGTTACGGACGTTTTATA < 41bp 0.520353328589206 0.724494654376635 NA NA prediction 0.408282651574857 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220313568 chr1:220313567 nonsynonymous SNV 0.848 3 20 hm7G_associated_SNPs_34104 0 0 1 0 2 IARS2 chr1:220313525 3'AG 220313525 Downstream 43bp 31325 chr1 220313567 220313567 1 + C T UCEC 220313568 + 220313548 220313588 41 TGATTTTGGAAAAGTTGTTCGGCTGTTACGGACGTTTTATA TGATTTTGGAAAAGTTGTTTGGCTGTTACGGACGTTTTATA < 41bp 0.520353328589206 0.724494654376635 NA NA prediction 0.408282651574857 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220313568 chr1:220313567 nonsynonymous SNV 0.848 3 20 hm7G_associated_SNPs_34104 0 0 1 0 2 IARS2 chr1:220313631 5'GT 220313631 Upstream 65bp 31326 chr4 100532310 100532310 1 + C T KIRC 100532311 + 100532291 100532331 41 ATGTTGCAGCAAAATTGTCCGTCGAGTTCTGAAGGAAATGG ATGTTGCAGCAAAATTGTCTGTCGAGTTCTGAAGGAAATGG < 41bp 0.498997140691042 0.70414085351596 NA NA prediction 0.40828170703192 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100532311 chr4:100532310 nonsynonymous SNV 0.965 3 20 hm7G_associated_SNPs_34105 0 0 1 0 2 MTTP chr4:100532300 3'AG 100532300 Downstream 11bp 31327 chr4 100532310 100532310 1 + C T KIRC 100532311 + 100532291 100532331 41 ATGTTGCAGCAAAATTGTCCGTCGAGTTCTGAAGGAAATGG ATGTTGCAGCAAAATTGTCTGTCGAGTTCTGAAGGAAATGG < 41bp 0.498997140691042 0.70414085351596 NA NA prediction 0.40828170703192 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100532311 chr4:100532310 nonsynonymous SNV 0.965 3 20 hm7G_associated_SNPs_34105 0 0 1 0 2 MTTP chr4:100532397 5'GT 100532397 Upstream 88bp 31328 chr10 134940829 134940829 1 + C T UCEC 134940830 + 134940810 134940850 41 GGGACAGAGGACGAGGACACGGCGTAGTGAGTACCGGGCAC GGGACAGAGGACGAGGACATGGCGTAGTGAGTACCGGGCAC < 41bp 0.50031012179896 0.704450929644698 NA NA prediction 0.408281615691476 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134940830 chr10:134940829 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_34106 0 0 0 0 3 ADGRA1 chr10:134940737 3'AG 134940737 Downstream 93bp 31329 chr10 134940829 134940829 1 + C T UCEC 134940830 + 134940810 134940850 41 GGGACAGAGGACGAGGACACGGCGTAGTGAGTACCGGGCAC GGGACAGAGGACGAGGACATGGCGTAGTGAGTACCGGGCAC < 41bp 0.50031012179896 0.704450929644698 NA NA prediction 0.408281615691476 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134940830 chr10:134940829 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_34106 0 0 0 0 3 ADGRA1 chr10:134940832 5'GT 134940832 Upstream 4bp 31330 chr10 134940829 134940829 1 + C T UCEC 134940830 + 134940810 134940850 41 GGGACAGAGGACGAGGACACGGCGTAGTGAGTACCGGGCAC GGGACAGAGGACGAGGACATGGCGTAGTGAGTACCGGGCAC < 41bp 0.50031012179896 0.704450929644698 NA NA prediction 0.408281615691476 Functional Gain - ADGRA1 ENSG00000197177 CDS Human protein_coding chr10:134940830 chr10:134940829 nonsynonymous SNV 0.007 1 20 hm7G_associated_SNPs_34106 0 0 0 0 3 ADGRA1 chr10:134940835 5'GT 134940835 Upstream 7bp 31331 chr6 161139390 161139390 1 + C T HNSC 161139391 + 161139371 161139411 41 GAACAGGTGAAAACTATCGCGGGAATGTGGCTGTTACCGTG GAACAGGTGAAAACTATCGTGGGAATGTGGCTGTTACCGTG < 41bp 0.535392048155763 0.739531481672383 NA NA prediction 0.408278867033239 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161139391 chr6:161139390 synonymous SNV . 0 20 hm7G_associated_SNPs_34107 0 0 1 0 2 PLG chr6:161139326 3'AG 161139326 Downstream 65bp 31332 chr6 161139390 161139390 1 + C T HNSC 161139391 + 161139371 161139411 41 GAACAGGTGAAAACTATCGCGGGAATGTGGCTGTTACCGTG GAACAGGTGAAAACTATCGTGGGAATGTGGCTGTTACCGTG < 41bp 0.535392048155763 0.739531481672383 NA NA prediction 0.408278867033239 Functional Gain - PLG ENSG00000122194 CDS Human protein_coding chr6:161139391 chr6:161139390 synonymous SNV . 0 20 hm7G_associated_SNPs_34107 0 0 1 0 2 PLG chr6:161139488 5'GT 161139488 Upstream 99bp 31333 chr1 229431640 229431640 1 + C T GBM 229431641 + 229431621 229431661 41 GCGCGGCCGGGGCTCTCCTCGTCTATGATATCACCAGGTAA GCGCGGCCGGGGCTCTCCTTGTCTATGATATCACCAGGTAA < 41bp 0.501856796461447 0.705993332509728 NA NA prediction 0.408273072096563 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431641 chr1:229431640 synonymous SNV . 0 20 hm7G_associated_SNPs_34108 0 0 1 3 2 RAB4A chr1:229431595 3'AG 229431595 Downstream 46bp 31334 chr1 229431640 229431640 1 + C T GBM 229431641 + 229431621 229431661 41 GCGCGGCCGGGGCTCTCCTCGTCTATGATATCACCAGGTAA GCGCGGCCGGGGCTCTCCTTGTCTATGATATCACCAGGTAA < 41bp 0.501856796461447 0.705993332509728 NA NA prediction 0.408273072096563 Functional Gain - RAB4A ENSG00000168118 CDS Human protein_coding chr1:229431641 chr1:229431640 synonymous SNV . 0 20 hm7G_associated_SNPs_34108 0 0 1 3 2 RAB4A chr1:229431657 5'GT 229431657 Upstream 18bp 31335 chr5 176815004 176815004 1 + G A STAD 176815005 + 176814985 176815025 41 CCCTGCCCAGGGCCTTCGCGGGGGCCACGGTGCATGACTGC CCCTGCCCAGGGCCTTCGCAGGGGCCACGGTGCATGACTGC < 41bp 0.480222579144845 0.704135503158062 NA NA prediction 0.408271006316125 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176815005 chr5:176815004 synonymous SNV . 0 20 hm7G_associated_SNPs_34109 1 0 0 0 1 SLC34A1 chr5:176814995 3'AG 176814995 Downstream 10bp 31336 chr8 27358496 27358496 1 + G A rs72475803 27358497 + 27358477 27358517 41 CCAGAGGGTGCCACTACCCGGCTTATGAAAGGAGAGATCAC CCAGAGGGTGCCACTACCCAGCTTATGAAAGGAGAGATCAC < 41bp 0.547581069705797 0.751713791454456 NA NA prediction 0.408265443497318 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358497 chr8:27358496 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_34112 0 0 1 0 4 EPHX2;EPHX2 chr8:27358443 3'AG 27358443 Downstream 54bp 31337 chr8 27358496 27358496 1 + G A rs72475803 27358497 + 27358477 27358517 41 CCAGAGGGTGCCACTACCCGGCTTATGAAAGGAGAGATCAC CCAGAGGGTGCCACTACCCAGCTTATGAAAGGAGAGATCAC < 41bp 0.547581069705797 0.751713791454456 NA NA prediction 0.408265443497318 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358497 chr8:27358496 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_34112 0 0 1 0 4 EPHX2 chr8:27358445 3'AG 27358445 Downstream 52bp 31338 chr8 27358496 27358496 1 + G A rs72475803 27358497 + 27358477 27358517 41 CCAGAGGGTGCCACTACCCGGCTTATGAAAGGAGAGATCAC CCAGAGGGTGCCACTACCCAGCTTATGAAAGGAGAGATCAC < 41bp 0.547581069705797 0.751713791454456 NA NA prediction 0.408265443497318 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358497 chr8:27358496 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_34112 0 0 1 0 4 EPHX2 chr8:27358481 3'AG 27358481 Downstream 16bp 31339 chr8 27358496 27358496 1 + G A rs72475803 27358497 + 27358477 27358517 41 CCAGAGGGTGCCACTACCCGGCTTATGAAAGGAGAGATCAC CCAGAGGGTGCCACTACCCAGCTTATGAAAGGAGAGATCAC < 41bp 0.547581069705797 0.751713791454456 NA NA prediction 0.408265443497318 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27358497 chr8:27358496 nonsynonymous SNV 0.023 0 20 hm7G_associated_SNPs_34112 0 0 1 0 4 EPHX2 chr8:27358527 5'GT 27358527 Upstream 32bp 31340 chr17 48755211 48755211 1 + G A STAD 48755212 + 48755192 48755232 41 ACTGGTGCCAGTGTCATCCGGGCCTACAACCGCAGCCGGGA ACTGGTGCCAGTGTCATCCAGGCCTACAACCGCAGCCGGGA < 41bp 0.576658197752982 0.780790623414115 NA NA prediction 0.408264851322267 Functional Gain - ABCC3 ENSG00000108846 CDS Human protein_coding chr17:48755212 chr17:48755211 nonsynonymous SNV 0.960 5 20 hm7G_associated_SNPs_34114 0 0 0 0 1 ABCC3 chr17:48755304 5'GT 48755304 Upstream 94bp 31341 chr10 99329992 99329992 1 + G T UCEC 99329993 + 99329973 99330013 41 TGCTGCTGGAGCACACGGAGGAGGAGAGCCTGGAGCCCCCC TGCTGCTGGAGCACACGGATGAGGAGAGCCTGGAGCCCCCC < 41bp 0.699476105876536 0.90360846270777 NA NA prediction 0.408264713662468 Functional Gain - UBTD1 ENSG00000165886 CDS Human protein_coding chr10:99329993 chr10:99329992 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_34115 0 0 0 0 1 UBTD1 chr10:99329895 3'AG 99329895 Downstream 98bp 31342 chr20 2575544 2575544 1 + G A STAD 2575545 + 2575525 2575565 41 ATCGGGTGGCTGAGGTACCGGCTGCCTATGGCTTACTTTAT ATCGGGTGGCTGAGGTACCAGCTGCCTATGGCTTACTTTAT < 41bp 0.499658056211884 0.704132073081389 NA NA prediction 0.408264146162779 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2575545 chr20:2575544 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34116 0 0 0 0 2 TMC2 chr20:2575471 3'AG 2575471 Downstream 74bp 31343 chr20 2575544 2575544 1 + G A STAD 2575545 + 2575525 2575565 41 ATCGGGTGGCTGAGGTACCGGCTGCCTATGGCTTACTTTAT ATCGGGTGGCTGAGGTACCAGCTGCCTATGGCTTACTTTAT < 41bp 0.499658056211884 0.704132073081389 NA NA prediction 0.408264146162779 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2575545 chr20:2575544 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34116 0 0 0 0 2 TMC2 chr20:2575613 5'GT 2575613 Upstream 70bp 31344 chr17 72367895 72367895 1 + C T ESCA 72367896 + 72367876 72367916 41 CTGACCGCAGTGGCCCTGGCGCGCCTTGCCACCAGGACCAG CTGACCGCAGTGGCCCTGGTGCGCCTTGCCACCAGGACCAG < 41bp 0.520143322207566 0.72427522187376 NA NA prediction 0.408263799332387 Functional Gain - GPR142 ENSG00000257008 CDS Human protein_coding chr17:72367896 chr17:72367895 nonsynonymous SNV 0.331 1 20 hm7G_associated_SNPs_34117 0 0 0 0 1 GPR142 chr17:72367868 3'AG 72367868 Downstream 28bp 31345 chr12 3387608 3387608 1 + G T OV 3387609 + 3387589 3387629 41 CTGTGGCTGTGGGCTGCTGGGAGTGGGCATCTGGCTCTCCG CTGTGGCTGTGGGCTGCTGTGAGTGGGCATCTGGCTCTCCG < 41bp 0.354992670037938 0.704131853971757 NA NA prediction 0.408263707943514 Functional Gain - TSPAN9 ENSG00000011105 CDS Human protein_coding chr12:3387609 chr12:3387608 stopgain 0.997 1 20 hm7G_associated_SNPs_34118 0 0 1 0 1 TSPAN9 chr12:3387587 3'AG 3387587 Downstream 22bp 31346 chr19 4428855 4428855 1 + C T COAD 4428856 + 4428836 4428876 41 TGAGGTCCGGACCCACGCACGTTTCCACCCGGAATGCAGAT TGAGGTCCGGACCCACGCATGTTTCCACCCGGAATGCAGAT < 41bp 0.512734091420713 0.716865039434052 NA NA prediction 0.408261896026679 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4428856 chr19:4428855 synonymous SNV . 0 20 hm7G_associated_SNPs_34119 0 0 1 0 1 CHAF1A chr19:4428887 5'GT 4428887 Upstream 33bp 31347 chr7 100459153 100459153 1 + C T DLBC 100459154 + 100459134 100459174 41 GGCTGCCCTGCTCACCGCGCGAGGAGGCCCCAGTAGCTGGG GGCTGCCCTGCTCACCGCGTGAGGAGGCCCCAGTAGCTGGG < 41bp 0.497112123740004 0.704129776485635 NA NA prediction 0.408259552971271 Functional Gain - SLC12A9 ENSG00000146828 CDS Human protein_coding chr7:100459154 chr7:100459153 stopgain 0.269 1 20 hm7G_associated_SNPs_34120 0 0 0 0 1 SLC12A9 chr7:100459206 5'GT 100459206 Upstream 54bp 31348 chr2 9528581 9528581 1 + C T LUSC 9528582 + 9528562 9528602 41 TCTTGCAGAATGAGACTTACGGAGCCCTCCTGAGTGGCAGC TCTTGCAGAATGAGACTTATGGAGCCCTCCTGAGTGGCAGC < 41bp 0.538343030065734 0.742472640143897 NA NA prediction 0.408259220156327 Functional Gain - ASAP2 ENSG00000151693 CDS Human protein_coding chr2:9528582 chr2:9528581 synonymous SNV . 0 20 hm7G_associated_SNPs_34121 0 0 0 0 1 ASAP2 chr2:9528675 5'GT 9528675 Upstream 95bp 31349 chr17 38416827 38416827 1 + G A rs142659099 38416828 + 38416808 38416848 41 CTGAGTAGAGATGAGCAGCGGGGTCGAGGCGCCCTCTTACA CTGAGTAGAGATGAGCAGCAGGGTCGAGGCGCCCTCTTACA < 41bp 0.523841155320628 0.727969161533876 NA NA prediction 0.408256012426494 Functional Gain - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38416828 chr17:38416827 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_34122 0 0 1 0 2 WIPF2 chr17:38416787 3'AG 38416787 Downstream 41bp 31350 chr17 38416827 38416827 1 + G A rs142659099 38416828 + 38416808 38416848 41 CTGAGTAGAGATGAGCAGCGGGGTCGAGGCGCCCTCTTACA CTGAGTAGAGATGAGCAGCAGGGTCGAGGCGCCCTCTTACA < 41bp 0.523841155320628 0.727969161533876 NA NA prediction 0.408256012426494 Functional Gain - WIPF2 ENSG00000171475 CDS Human protein_coding chr17:38416828 chr17:38416827 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_34122 0 0 1 0 2 WIPF2 chr17:38416879 5'GT 38416879 Upstream 53bp 31351 chr4 160266325 160266325 1 + C T UCEC 160266326 + 160266306 160266346 41 GACAGGTGGTCATAAAAAGCGGGTACGTCGTAGTTCCTTTC GACAGGTGGTCATAAAAAGTGGGTACGTCGTAGTTCCTTTC < 41bp 0.507954248578553 0.712082217327434 NA NA prediction 0.408255937497761 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160266326 chr4:160266325 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34123 0 0 0 0 1 RAPGEF2 chr4:160266258 3'AG 160266258 Downstream 68bp 31352 chr19 36124005 36124005 1 + G A COAD 36124006 + 36123986 36124026 41 TCTCTCCTCTGCAGCAGCCGGCCCCCGCCCTATGGCCCTAC TCTCTCCTCTGCAGCAGCCAGCCCCCGCCCTATGGCCCTAC < 41bp 0.590813300533461 0.794940004750721 NA NA prediction 0.408253408434519 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124006 chr19:36124005 nonsynonymous SNV 0.729 3 20 hm7G_associated_SNPs_34124 0 0 1 0 3 RBM42 chr19:36123979 3'AG 36123979 Downstream 27bp 31353 chr19 36124005 36124005 1 + G A COAD 36124006 + 36123986 36124026 41 TCTCTCCTCTGCAGCAGCCGGCCCCCGCCCTATGGCCCTAC TCTCTCCTCTGCAGCAGCCAGCCCCCGCCCTATGGCCCTAC < 41bp 0.590813300533461 0.794940004750721 NA NA prediction 0.408253408434519 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124006 chr19:36124005 nonsynonymous SNV 0.729 3 20 hm7G_associated_SNPs_34124 0 0 1 0 3 RBM42 chr19:36124000 3'AG 36124000 Downstream 6bp 31354 chr19 36124005 36124005 1 + G A COAD 36124006 + 36123986 36124026 41 TCTCTCCTCTGCAGCAGCCGGCCCCCGCCCTATGGCCCTAC TCTCTCCTCTGCAGCAGCCAGCCCCCGCCCTATGGCCCTAC < 41bp 0.590813300533461 0.794940004750721 NA NA prediction 0.408253408434519 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124006 chr19:36124005 nonsynonymous SNV 0.729 3 20 hm7G_associated_SNPs_34124 0 0 1 0 3 RBM42 chr19:36124003 3'AG 36124003 Downstream 3bp 31355 chr19 56694507 56694507 1 + G A SKCM 56694508 + 56694488 56694528 41 GTATTTTTGTTTCTAGACGGGCTCCCCTACTCCCACCCTCC GTATTTTTGTTTCTAGACGAGCTCCCCTACTCCCACCCTCC < 41bp 0.521020746942421 0.725145912884066 NA NA prediction 0.40825033188329 Functional Gain - GALP ENSG00000197487 CDS Human protein_coding chr19:56694508 chr19:56694507 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_34125 0 0 0 1 2 GALP chr19:56694504 3'AG 56694504 Downstream 4bp 31356 chr19 56694507 56694507 1 + G A SKCM 56694508 + 56694488 56694528 41 GTATTTTTGTTTCTAGACGGGCTCCCCTACTCCCACCCTCC GTATTTTTGTTTCTAGACGAGCTCCCCTACTCCCACCCTCC < 41bp 0.521020746942421 0.725145912884066 NA NA prediction 0.40825033188329 Functional Gain - GALP ENSG00000197487 CDS Human protein_coding chr19:56694508 chr19:56694507 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_34125 0 0 0 1 2 GALP chr19:56694581 5'GT 56694581 Upstream 75bp 31357 chr4 57179515 57179515 1 + G T LUSC 57179516 + 57179496 57179536 41 TTAAGCCAAAAAAACAGAGGGTGTCAAAGAAGCACAGGCGC TTAAGCCAAAAAAACAGAGTGTGTCAAAGAAGCACAGGCGC < 41bp 0.360434511906318 0.704125107593512 NA NA prediction 0.408250215187025 Functional Gain - KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57179516 chr4:57179515 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34126 0 0 0 0 1 KIAA1211 chr4:57179545 5'GT 57179545 Upstream 31bp 31358 chr6 43111240 43111240 1 + C T UCEC 43111241 + 43111221 43111261 41 TTGGGTTGTCGGTGGGTGCCGCTGTGGCCTACATCATTGCC TTGGGTTGTCGGTGGGTGCTGCTGTGGCCTACATCATTGCC < 41bp 0.548708840751755 0.752833685391217 NA NA prediction 0.408249689278925 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43111241 chr6:43111240 synonymous SNV . 0 20 hm7G_associated_SNPs_34127 0 0 1 1 2 PTK7 chr6:43111155 3'AG 43111155 Downstream 86bp 31359 chr6 43111240 43111240 1 + C T UCEC 43111241 + 43111221 43111261 41 TTGGGTTGTCGGTGGGTGCCGCTGTGGCCTACATCATTGCC TTGGGTTGTCGGTGGGTGCTGCTGTGGCCTACATCATTGCC < 41bp 0.548708840751755 0.752833685391217 NA NA prediction 0.408249689278925 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43111241 chr6:43111240 synonymous SNV . 0 20 hm7G_associated_SNPs_34127 0 0 1 1 2 PTK7 chr6:43111160 3'AG 43111160 Downstream 81bp 31360 chr2 31483747 31483747 1 + C T READ 31483748 + 31483728 31483768 41 GCCCCGAAATGCTGCCCTGCGCAAGCTCAACGACCTCATCA GCCCCGAAATGCTGCCCTGTGCAAGCTCAACGACCTCATCA < 41bp 0.535706530126362 0.739831162981942 NA NA prediction 0.408249265711159 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31483748 chr2:31483747 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_34128 0 0 0 0 1 EHD3 chr2:31483788 5'GT 31483788 Upstream 42bp 31361 chr20 61936897 61936897 1 + C T CESC 61936898 + 61936878 61936918 41 TGGGCGCTTCCTGCTAGCTCGGAGGGAGTTTGTGAGTAAGT TGGGCGCTTCCTGCTAGCTTGGAGGGAGTTTGTGAGTAAGT < 41bp 0.514452385859371 0.718576414830027 NA NA prediction 0.408248057941313 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61936898 chr20:61936897 nonsynonymous SNV 0.539 3 20 hm7G_associated_SNPs_34129 0 0 0 0 1 COL20A1 chr20:61936912 5'GT 61936912 Upstream 16bp 31362 chr5 54718717 54718717 1 + C T GBM 54718718 + 54718698 54718738 41 CTATCCAGGCAGCATAATTCGTTGTATGAGGCGCCTGGAAG CTATCCAGGCAGCATAATTTGTTGTATGAGGCGCCTGGAAG < 41bp 0.506223347217548 0.710346936619127 NA NA prediction 0.408247178803159 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54718718 chr5:54718717 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34130 0 0 1 0 2 SKIV2L2 chr5:54718706 3'AG 54718706 Downstream 12bp 31363 chr5 54718717 54718717 1 + C T GBM 54718718 + 54718698 54718738 41 CTATCCAGGCAGCATAATTCGTTGTATGAGGCGCCTGGAAG CTATCCAGGCAGCATAATTTGTTGTATGAGGCGCCTGGAAG < 41bp 0.506223347217548 0.710346936619127 NA NA prediction 0.408247178803159 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54718718 chr5:54718717 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34130 0 0 1 0 2 SKIV2L2 chr5:54718810 5'GT 54718810 Upstream 94bp 31364 chr3 14802992 14802992 1 + G A SKCM 14802993 + 14802973 14803013 41 TCAACAGATGTTTGCCGGGGGGAAGCTCATTTTTGGGGGCC TCAACAGATGTTTGCCGGGAGGAAGCTCATTTTTGGGGGCC < 41bp 0.492462261809488 0.704117427900958 NA NA prediction 0.408234855801916 Functional Gain - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14802993 chr3:14802992 nonsynonymous SNV 0.557 1 20 hm7G_associated_SNPs_34133 0 0 0 0 1 C3orf20 chr3:14802980 3'AG 14802980 Downstream 13bp 31365 chr6 36175167 36175167 1 + G A COAD 36175168 + 36175148 36175188 41 TCCGGCATGACTTGGAGCGGGCGCGGCTGCTGATTGAGCTG TCCGGCATGACTTGGAGCGAGCGCGGCTGCTGATTGAGCTG < 41bp 0.48594107739573 0.704117142320313 NA NA prediction 0.408234284640626 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36175168 chr6:36175167 synonymous SNV . 0 20 hm7G_associated_SNPs_34134 0 0 1 0 2 BRPF3 chr6:36175090 3'AG 36175090 Downstream 78bp 31366 chr6 36175167 36175167 1 + G A COAD 36175168 + 36175148 36175188 41 TCCGGCATGACTTGGAGCGGGCGCGGCTGCTGATTGAGCTG TCCGGCATGACTTGGAGCGAGCGCGGCTGCTGATTGAGCTG < 41bp 0.48594107739573 0.704117142320313 NA NA prediction 0.408234284640626 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36175168 chr6:36175167 synonymous SNV . 0 20 hm7G_associated_SNPs_34134 0 0 1 0 2 BRPF3 chr6:36175221 5'GT 36175221 Upstream 55bp 31367 chr1 10218427 10218427 1 + C T UCEC 10218428 + 10218408 10218448 41 CTTTAGATGTTGAGCATACCGGAGCCACCAGTGAGTTTTAT CTTTAGATGTTGAGCATACTGGAGCCACCAGTGAGTTTTAT < 41bp 0.554811071118102 0.75892766940308 NA NA prediction 0.408233196569956 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10218428 chr1:10218427 synonymous SNV . 0 20 hm7G_associated_SNPs_34135 0 0 1 0 1 UBE4B chr1:10218414 3'AG 10218414 Downstream 14bp 31368 chr6 160485884 160485884 1 + C T COAD 160485885 + 160485865 160485905 41 TTCCTACTTGTTTGAGTGGCGAACGCAGTATGCCTGCCCAC TTCCTACTTGTTTGAGTGGTGAACGCAGTATGCCTGCCCAC < 41bp 0.528657948904459 0.732773811148691 NA NA prediction 0.408231724488465 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160485885 chr6:160485884 stopgain 0.999 0 20 hm7G_associated_SNPs_34138 0 0 1 0 2 IGF2R chr6:160485836 3'AG 160485836 Downstream 49bp 31369 chr6 160485884 160485884 1 + C T COAD 160485885 + 160485865 160485905 41 TTCCTACTTGTTTGAGTGGCGAACGCAGTATGCCTGCCCAC TTCCTACTTGTTTGAGTGGTGAACGCAGTATGCCTGCCCAC < 41bp 0.528657948904459 0.732773811148691 NA NA prediction 0.408231724488465 Functional Gain - IGF2R ENSG00000197081 CDS Human protein_coding chr6:160485885 chr6:160485884 stopgain 0.999 0 20 hm7G_associated_SNPs_34138 0 0 1 0 2 IGF2R chr6:160485933 5'GT 160485933 Upstream 50bp 31370 chr16 24921761 24921761 1 + C T COAD 24921762 + 24921742 24921782 41 GCAGCAGCAGCGTCCAGTTCGAGATGGTTCAAGAAAACACG GCAGCAGCAGCGTCCAGTTTGAGATGGTTCAAGAAAACACG < 41bp 0.514808090428651 0.718922987469719 NA NA prediction 0.408229794082135 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24921762 chr16:24921761 synonymous SNV . 0 20 hm7G_associated_SNPs_34140 0 0 0 0 1 SLC5A11 chr16:24921798 5'GT 24921798 Upstream 38bp 31371 chr17 19470509 19470509 1 + C T UCEC 19470510 + 19470490 19470530 41 GGCCTCCCCATCGGGATCGCGCTGATGTTTGCAACCACACT GGCCTCCCCATCGGGATCGTGCTGATGTTTGCAACCACACT < 41bp 0.508995328370502 0.713110194210824 NA NA prediction 0.408229731680642 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19470510 chr17:19470509 nonsynonymous SNV 0.037 0 20 hm7G_associated_SNPs_34141 0 0 1 0 1 SLC47A1 chr17:19470541 5'GT 19470541 Upstream 33bp 31372 chr1 154296125 154296125 1 + G A HNSC 154296126 + 154296106 154296146 41 CCTGGACAGACGGAACAAGGGAGTCCCTGCGGGTCTGGAGC CCTGGACAGACGGAACAAGAGAGTCCCTGCGGGTCTGGAGC < 41bp 0.554593606653953 0.758705038889768 NA NA prediction 0.408222864471631 Functional Gain - AQP10 ENSG00000143595 CDS Human protein_coding chr1:154296126 chr1:154296125 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_34142 0 0 0 0 1 AQP10 chr1:154296065 3'AG 154296065 Downstream 61bp 31373 chr1 18703337 18703337 1 + G A SKCM 18703338 + 18703318 18703358 41 TTCACGTGGACGCGGGTTGGGAGCCGCCTCCTGGACGGCAG TTCACGTGGACGCGGGTTGAGAGCCGCCTCCTGGACGGCAG < 41bp 0.497398367914009 0.704106857270033 NA NA prediction 0.408213714540067 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18703338 chr1:18703337 nonsynonymous SNV 0.911 4 20 hm7G_associated_SNPs_34144 0 0 0 0 1 IGSF21 chr1:18703294 3'AG 18703294 Downstream 44bp 31374 chr19 12980059 12980059 1 + C T COAD 12980060 + 12980040 12980080 41 CTTCACACTGCGTGCCATCCGTGTCTACATGGGTGACACGG CTTCACACTGCGTGCCATCTGTGTCTACATGGGTGACACGG < 41bp 0.514822449909274 0.718927460460758 NA NA prediction 0.408210021102967 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12980060 chr19:12980059 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_34148 0 0 0 0 1 MAST1 chr19:12980109 5'GT 12980109 Upstream 51bp 31375 chr2 219494317 219494317 1 + C T rs115204095 219494318 + 219494298 219494338 41 GGGAACCTGTCGTTTACCACGGACACACCCTGACCTCCCGC GGGAACCTGTCGTTTACCATGGACACACCCTGACCTCCCGC < 41bp 0.484622740001827 0.704104293821202 NA NA prediction 0.408208587642404 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219494318 chr2:219494317 synonymous SNV . 0 20 hm7G_associated_SNPs_34149 0 0 0 0 1 PLCD4 chr2:219494242 3'AG 219494242 Downstream 76bp 31376 chr15 93528836 93528836 1 + C T COAD 93528837 + 93528817 93528857 41 TGATGACAAGAAGCCAAAGCGCAGAGGGCGTCCGAGGAGTG TGATGACAAGAAGCCAAAGTGCAGAGGGCGTCCGAGGAGTG < 41bp 0.532069632125789 0.736173721728313 NA NA prediction 0.408208179205048 Functional Gain - CHD2 ENSG00000173575 CDS Human protein_coding chr15:93528837 chr15:93528836 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34150 0 0 1 0 1 CHD2 chr15:93528903 5'GT 93528903 Upstream 68bp 31377 chr12 45810604 45810604 1 + C T CESC 45810605 + 45810585 45810625 41 ACTGACCACCCAGTTTAGACGCCTGGTACCAGAGAAAGCCC ACTGACCACCCAGTTTAGATGCCTGGTACCAGAGAAAGCCC < 41bp 0.5249256835695 0.729028645600922 NA NA prediction 0.408205924062845 Functional Gain - ANO6 ENSG00000177119 CDS Human protein_coding chr12:45810605 chr12:45810604 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34151 0 0 1 0 1 ANO6 chr12:45810687 5'GT 45810687 Upstream 84bp 31378 chr11 45926284 45926284 1 + C T KIRP 45926285 + 45926265 45926305 41 GTAGATTGCCACCACCCGCCGGCTCACCGTGCACTTTAACC GTAGATTGCCACCACCCGCTGGCTCACCGTGCACTTTAACC < 41bp 0.522982217908621 0.727081967307685 NA NA prediction 0.408199498798129 Functional Gain - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926285 chr11:45926284 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34152 0 0 0 0 1 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 16bp 31379 chr22 21351029 21351029 1 + G T BLCA 21351030 + 21351010 21351050 41 TACGGCTTCTACAACAACCGGCTGCAGGCGTACTGCAAGCA TACGGCTTCTACAACAACCTGCTGCAGGCGTACTGCAAGCA < 41bp 0.710159473723697 0.914258224531405 NA NA prediction 0.408197501615415 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21351030 chr22:21351029 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_34153 0 0 1 0 2 LZTR1 chr22:21350985 3'AG 21350985 Downstream 45bp 31380 chr22 21351029 21351029 1 + G T BLCA 21351030 + 21351010 21351050 41 TACGGCTTCTACAACAACCGGCTGCAGGCGTACTGCAAGCA TACGGCTTCTACAACAACCTGCTGCAGGCGTACTGCAAGCA < 41bp 0.710159473723697 0.914258224531405 NA NA prediction 0.408197501615415 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21351030 chr22:21351029 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_34153 0 0 1 0 2 LZTR1 chr22:21351090 5'GT 21351090 Upstream 62bp 31381 chr17 39974646 39974646 1 + C T DLBC 39974647 + 39974627 39974667 41 TCTGCAGCTACAGTAAGGGCGGCACTTATGACACCTACGTC TCTGCAGCTACAGTAAGGGTGGCACTTATGACACCTACGTC < 41bp 0.524525972488241 0.728624184037431 NA NA prediction 0.408196423098381 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39974647 chr17:39974646 synonymous SNV . 0 20 hm7G_associated_SNPs_34154 0 0 1 0 1 FKBP10 chr17:39974634 3'AG 39974634 Downstream 13bp 31382 chr9 35386206 35386206 1 + G T UCEC 35386207 + 35386187 35386227 41 GAGCCAGCCAGGTGGTAAAGGATTGTGTGAAGGCCTGTTTG GAGCCAGCCAGGTGGTAAATGATTGTGTGAAGGCCTGTTTG < 41bp 0.361769197718618 0.704095856177829 NA NA prediction 0.408191712355658 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35386207 chr9:35386206 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34155 0 0 0 0 2 UNC13B chr9:35386162 3'AG 35386162 Downstream 45bp 31383 chr9 35386206 35386206 1 + G T UCEC 35386207 + 35386187 35386227 41 GAGCCAGCCAGGTGGTAAAGGATTGTGTGAAGGCCTGTTTG GAGCCAGCCAGGTGGTAAATGATTGTGTGAAGGCCTGTTTG < 41bp 0.361769197718618 0.704095856177829 NA NA prediction 0.408191712355658 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35386207 chr9:35386206 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34155 0 0 0 0 2 UNC13B chr9:35386290 5'GT 35386290 Upstream 85bp 31384 chr12 109936104 109936104 1 + C T CESC 109936105 + 109936085 109936125 41 ATTTTTAAGAGACCAAGATCGATGCCGTGATGTATGTGAAA ATTTTTAAGAGACCAAGATTGATGCCGTGATGTATGTGAAA < 41bp 0.514619887598083 0.718715106679911 NA NA prediction 0.408190438163657 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109936105 chr12:109936104 stopgain 0.253 1 20 hm7G_associated_SNPs_34156 0 0 1 0 2 UBE3B chr12:109936038 3'AG 109936038 Downstream 67bp 31385 chr12 109936104 109936104 1 + C T CESC 109936105 + 109936085 109936125 41 ATTTTTAAGAGACCAAGATCGATGCCGTGATGTATGTGAAA ATTTTTAAGAGACCAAGATTGATGCCGTGATGTATGTGAAA < 41bp 0.514619887598083 0.718715106679911 NA NA prediction 0.408190438163657 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109936105 chr12:109936104 stopgain 0.253 1 20 hm7G_associated_SNPs_34156 0 0 1 0 2 UBE3B chr12:109936158 5'GT 109936158 Upstream 55bp 31386 chr21 45784023 45784023 1 + C T rs142310115 45784024 + 45784004 45784044 41 GTGTGTCAGTGTGGCTACACGCATGAGCAGCACTTGGAGGA GTGTGTCAGTGTGGCTACATGCATGAGCAGCACTTGGAGGA < 41bp 0.532650093563371 0.736742458394136 NA NA prediction 0.408184729661531 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45784024 chr21:45784023 nonsynonymous SNV 0.427 1 20 hm7G_associated_SNPs_34161 0 0 0 0 1 TRPM2 chr21:45783997 3'AG 45783997 Downstream 27bp 31387 chr2 109292448 109292448 1 + C T GBM 109292449 + 109292429 109292469 41 GACGGCCCATCGAAGGGCGCGTGGTGAACGCTATGGGCAAG GACGGCCCATCGAAGGGCGTGTGGTGAACGCTATGGGCAAG < 41bp 0.51214151581819 0.716233111453489 NA NA prediction 0.408183191270597 Functional Gain - LIMS1 ENSG00000169756 CDS Human protein_coding chr2:109292449 chr2:109292448 synonymous SNV . 0 20 hm7G_associated_SNPs_34164 0 0 1 0 1 LIMS1 chr2:109292484 5'GT 109292484 Upstream 37bp 31388 chr10 105200538 105200538 1 + C T STAD 105200539 + 105200519 105200559 41 CCGGCCTGTCAGAGGAGGACGACAGCCTTGTGGACGTGTAC CCGGCCTGTCAGAGGAGGATGACAGCCTTGTGGACGTGTAC < 41bp 0.543000128439158 0.747087132944497 NA NA prediction 0.408174009010678 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105200539 chr10:105200538 synonymous SNV . 0 20 hm7G_associated_SNPs_34168 0 0 1 0 2 PDCD11 chr10:105200491 3'AG 105200491 Downstream 48bp 31389 chr10 105200538 105200538 1 + C T STAD 105200539 + 105200519 105200559 41 CCGGCCTGTCAGAGGAGGACGACAGCCTTGTGGACGTGTAC CCGGCCTGTCAGAGGAGGATGACAGCCTTGTGGACGTGTAC < 41bp 0.543000128439158 0.747087132944497 NA NA prediction 0.408174009010678 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105200539 chr10:105200538 synonymous SNV . 0 20 hm7G_associated_SNPs_34168 0 0 1 0 2 PDCD11 chr10:105200607 5'GT 105200607 Upstream 70bp 31390 chr9 95765277 95765277 1 + G A STAD 95765278 + 95765258 95765298 41 GAGGAGACCTATGTGAAGCGGCTGCACCTGCTGGACCAGGT GAGGAGACCTATGTGAAGCAGCTGCACCTGCTGGACCAGGT < 41bp 0.554397068396918 0.758482355432835 NA NA prediction 0.408170574071834 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95765278 chr9:95765277 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_34169 0 0 0 0 1 FGD3 chr9:95765296 5'GT 95765296 Upstream 20bp 31391 chr16 56914074 56914074 1 + C T UCEC 56914075 + 56914055 56914095 41 ACCAGCTGTACCCACTGATCGGCTTCTTCGGCAAAGGCTAT ACCAGCTGTACCCACTGATTGGCTTCTTCGGCAAAGGCTAT < 41bp 0.540089214721193 0.744174289030302 NA NA prediction 0.408170148618217 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56914075 chr16:56914074 synonymous SNV . 0 20 hm7G_associated_SNPs_34170 0 0 0 0 2 SLC12A3 chr16:56914042 3'AG 56914042 Downstream 33bp 31392 chr16 56914074 56914074 1 + C T UCEC 56914075 + 56914055 56914095 41 ACCAGCTGTACCCACTGATCGGCTTCTTCGGCAAAGGCTAT ACCAGCTGTACCCACTGATTGGCTTCTTCGGCAAAGGCTAT < 41bp 0.540089214721193 0.744174289030302 NA NA prediction 0.408170148618217 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56914075 chr16:56914074 synonymous SNV . 0 20 hm7G_associated_SNPs_34170 0 0 0 0 2 SLC12A3 chr16:56914165 5'GT 56914165 Upstream 92bp 31393 chr22 31529916 31529916 1 + G A rs202014053 31529917 + 31529897 31529937 41 AGATCTCGCTGCCTTCCTCGGAGTTGGCCAGCAGCAGCACA AGATCTCGCTGCCTTCCTCAGAGTTGGCCAGCAGCAGCACA < 41bp 0.498723529774842 0.704083941085379 NA NA prediction 0.408167882170758 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31529917 chr22:31529916 synonymous SNV . 0 20 hm7G_associated_SNPs_34171 0 0 0 0 1 INPP5J chr22:31529899 3'AG 31529899 Downstream 18bp 31394 chr1 16096929 16096929 1 + C T UCEC 16096930 + 16096910 16096950 41 GTGCCTTCTGCCACAAGACCGTGTCCCCCCGAGAGCTGGCT GTGCCTTCTGCCACAAGACTGTGTCCCCCCGAGAGCTGGCT < 41bp 0.526067933006551 0.730149910708888 NA NA prediction 0.408163955404674 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16096930 chr1:16096929 synonymous SNV . 0 20 hm7G_associated_SNPs_34173 0 0 0 0 1 FBLIM1 chr1:16096904 3'AG 16096904 Downstream 26bp 31395 chr12 133294353 133294353 1 + C T COAD 133294354 + 133294334 133294374 41 GCCCCCATCGAGCCAGACCCGCCCGTGTCTCATTGGAAGCC GCCCCCATCGAGCCAGACCTGCCCGTGTCTCATTGGAAGCC < 41bp 0.503353300601117 0.707435069009426 NA NA prediction 0.408163536816617 Functional Gain - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294354 chr12:133294353 nonsynonymous SNV 0.145 4 20 hm7G_associated_SNPs_34174 0 0 1 0 2 PGAM5 chr12:133294296 3'AG 133294296 Downstream 58bp 31396 chr12 133294353 133294353 1 + C T COAD 133294354 + 133294334 133294374 41 GCCCCCATCGAGCCAGACCCGCCCGTGTCTCATTGGAAGCC GCCCCCATCGAGCCAGACCTGCCCGTGTCTCATTGGAAGCC < 41bp 0.503353300601117 0.707435069009426 NA NA prediction 0.408163536816617 Functional Gain - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294354 chr12:133294353 nonsynonymous SNV 0.145 4 20 hm7G_associated_SNPs_34174 0 0 1 0 2 PGAM5 chr12:133294384 5'GT 133294384 Upstream 32bp 31397 chr14 93022098 93022098 1 + C T COAD 93022099 + 93022079 93022119 41 TGAATTCTGTTTTTCAGTCCGGTTCCAGTTGTTGGCAAAGG TGAATTCTGTTTTTCAGTCTGGTTCCAGTTGTTGGCAAAGG < 41bp 0.536380087109015 0.740460243636125 NA NA prediction 0.408160313054219 Functional Gain - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93022099 chr14:93022098 nonsynonymous SNV 0.028 1 20 hm7G_associated_SNPs_34176 0 0 1 0 1 RIN3 chr14:93022096 3'AG 93022096 Downstream 3bp 31398 chr11 15197555 15197555 1 + C T UCEC 15197556 + 15197536 15197576 41 GGTGCACAGCATGAGCGTGCGTCTGACCTGCCATGCCCGCT GGTGCACAGCATGAGCGTGTGTCTGACCTGCCATGCCCGCT < 41bp 0.528834326859688 0.732913879138188 NA NA prediction 0.408159104557001 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15197556 chr11:15197555 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_34177 0 0 0 0 1 INSC chr11:15197632 5'GT 15197632 Upstream 78bp 31399 chr16 16196490 16196490 1 + C T COAD 16196491 + 16196471 16196511 41 TCTCTTCTGCCAGGGGTCACGGGCGTCAGCGGTCCAGGGAA TCTCTTCTGCCAGGGGTCATGGGCGTCAGCGGTCCAGGGAA < 41bp 0.531196283598974 0.735274432953315 NA NA prediction 0.408156298708681 Functional Gain - ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16196491 chr16:16196490 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_34178 0 0 1 0 2 ABCC1 chr16:16196484 3'AG 16196484 Downstream 7bp 31400 chr16 16196490 16196490 1 + C T COAD 16196491 + 16196471 16196511 41 TCTCTTCTGCCAGGGGTCACGGGCGTCAGCGGTCCAGGGAA TCTCTTCTGCCAGGGGTCATGGGCGTCAGCGGTCCAGGGAA < 41bp 0.531196283598974 0.735274432953315 NA NA prediction 0.408156298708681 Functional Gain - ABCC1 ENSG00000103222 CDS Human protein_coding chr16:16196491 chr16:16196490 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_34178 0 0 1 0 2 ABCC1 chr16:16196574 5'GT 16196574 Upstream 85bp 31401 chr14 23237290 23237290 1 + G T LIHC 23237291 + 23237271 23237311 41 CTTCGCTGAACTGGGGCTGGGGTCATACACCCCAGTGGGAC CTTCGCTGAACTGGGGCTGTGGTCATACACCCCAGTGGGAC < 41bp 0.712023051080066 0.916100425790054 NA NA prediction 0.408154749419976 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23237291 chr14:23237290 nonsynonymous SNV 0.956 4 20 hm7G_associated_SNPs_34179 0 0 1 0 1 OXA1L chr14:23237380 5'GT 23237380 Upstream 91bp 31402 chr11 45204576 45204576 1 + C T UCEC 45204577 + 45204557 45204597 41 TAGTGGAGAGAGTGACGTGCGATGTGTAAACGAGGTCATCC TAGTGGAGAGAGTGACGTGTGATGTGTAAACGAGGTCATCC < 41bp 0.546590541000688 0.750667359241827 NA NA prediction 0.408153636482277 Functional Gain - PRDM11 ENSG00000019485 CDS Human protein_coding chr11:45204577 chr11:45204576 stopgain 0.209 1 20 hm7G_associated_SNPs_34180 0 0 1 0 1 PRDM11 chr11:45204674 5'GT 45204674 Upstream 99bp 31403 chr20 62837070 62837070 1 + C T COAD 62837071 + 62837051 62837091 41 GTGAAGGACGCCTCTGTTTCGGATGAATCGGAAGGAACTCT GTGAAGGACGCCTCTGTTTTGGATGAATCGGAAGGAACTCT < 41bp 0.557354673419828 0.761429136891988 NA NA prediction 0.408148926944319 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62837071 chr20:62837070 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_34181 0 0 0 0 1 MYT1 chr20:62837153 5'GT 62837153 Upstream 84bp 31404 chr11 64137808 64137808 1 + G A COAD 64137809 + 64137789 64137829 41 GGGGCGCTTCTCCCTTGACGGGGAGGCCTGGCAGGGTGTAT GGGGCGCTTCTCCCTTGACAGGGAGGCCTGGCAGGGTGTAT < 41bp 0.546183958419031 0.75025805535943 NA NA prediction 0.408148193880797 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137809 chr11:64137808 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_34182 0 0 0 0 2 RPS6KA4 chr11:64137760 3'AG 64137760 Downstream 49bp 31405 chr11 64137808 64137808 1 + G A COAD 64137809 + 64137789 64137829 41 GGGGCGCTTCTCCCTTGACGGGGAGGCCTGGCAGGGTGTAT GGGGCGCTTCTCCCTTGACAGGGAGGCCTGGCAGGGTGTAT < 41bp 0.546183958419031 0.75025805535943 NA NA prediction 0.408148193880797 Functional Gain - RPS6KA4 ENSG00000162302 CDS Human protein_coding chr11:64137809 chr11:64137808 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_34182 0 0 0 0 2 RPS6KA4 chr11:64137856 5'GT 64137856 Upstream 49bp 31406 chr11 119027348 119027348 1 + C T UCEC 119027349 + 119027329 119027369 41 TCCCCTATCTAAAGGGACTCGGCTTGCATTGCCCCACCTAC TCCCCTATCTAAAGGGACTTGGCTTGCATTGCCCCACCTAC < 41bp 0.545777973955006 0.749852052854241 NA NA prediction 0.40814815779847 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027349 chr11:119027348 synonymous SNV . 0 20 hm7G_associated_SNPs_34183 0 0 0 0 2 ABCG4 chr11:119027274 3'AG 119027274 Downstream 75bp 31407 chr11 119027348 119027348 1 + C T UCEC 119027349 + 119027329 119027369 41 TCCCCTATCTAAAGGGACTCGGCTTGCATTGCCCCACCTAC TCCCCTATCTAAAGGGACTTGGCTTGCATTGCCCCACCTAC < 41bp 0.545777973955006 0.749852052854241 NA NA prediction 0.40814815779847 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027349 chr11:119027348 synonymous SNV . 0 20 hm7G_associated_SNPs_34183 0 0 0 0 2 ABCG4 chr11:119027388 5'GT 119027388 Upstream 41bp 31408 chr1 150471442 150471442 1 + C T COAD 150471443 + 150471423 150471463 41 CGTTCTTGGCTTCTCCTTCCGCCTGGCACTGTCCACCCGGC CGTTCTTGGCTTCTCCTTCTGCCTGGCACTGTCCACCCGGC < 41bp 0.548322498375311 0.752394468693059 NA NA prediction 0.408143940635496 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471443 chr1:150471442 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_34184 0 0 1 0 2 TARS2 chr1:150471373 3'AG 150471373 Downstream 70bp 31409 chr1 150471442 150471442 1 + C T COAD 150471443 + 150471423 150471463 41 CGTTCTTGGCTTCTCCTTCCGCCTGGCACTGTCCACCCGGC CGTTCTTGGCTTCTCCTTCTGCCTGGCACTGTCCACCCGGC < 41bp 0.548322498375311 0.752394468693059 NA NA prediction 0.408143940635496 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471443 chr1:150471442 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_34184 0 0 1 0 2 TARS2 chr1:150471510 5'GT 150471510 Upstream 69bp 31410 chr7 208907 208907 1 + C T UCEC 208908 + 208888 208928 41 CTTCCTGCAGCCATGAAGTCGGGGGGCACGCAGCTGAAGCT CTTCCTGCAGCCATGAAGTTGGGGGGCACGCAGCTGAAGCT < 41bp 0.542702804123038 0.7467742489345 NA NA prediction 0.408142889622923 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:208908 chr7:208907 nonsynonymous SNV 0.968 0 20 hm7G_associated_SNPs_34185 0 0 1 0 2 FAM20C chr7:208898 3'AG 208898 Downstream 10bp 31411 chr7 208907 208907 1 + C T UCEC 208908 + 208888 208928 41 CTTCCTGCAGCCATGAAGTCGGGGGGCACGCAGCTGAAGCT CTTCCTGCAGCCATGAAGTTGGGGGGCACGCAGCTGAAGCT < 41bp 0.542702804123038 0.7467742489345 NA NA prediction 0.408142889622923 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:208908 chr7:208907 nonsynonymous SNV 0.968 0 20 hm7G_associated_SNPs_34185 0 0 1 0 2 FAM20C chr7:208976 5'GT 208976 Upstream 70bp 31412 chr2 155566234 155566234 1 + C T SKCM 155566235 + 155566215 155566255 41 TCACAATTTGCCACGTGATCGATGCCAAAAGCCCCTTTTAT TCACAATTTGCCACGTGATTGATGCCAAAAGCCCCTTTTAT < 41bp 0.488992761695467 0.704065710909907 NA NA prediction 0.408131421819814 Functional Gain - KCNJ3 ENSG00000162989 CDS Human protein_coding chr2:155566235 chr2:155566234 synonymous SNV . 0 20 hm7G_associated_SNPs_34187 0 0 0 0 1 KCNJ3 chr2:155566331 5'GT 155566331 Upstream 98bp 31413 chr15 43668794 43668794 1 + C T SKCM 43668795 + 43668775 43668815 41 TTCTGTTTTGCAGCCTTATCGCCAAGCACTGCTTGATTTGG TTCTGTTTTGCAGCCTTATTGCCAAGCACTGCTTGATTTGG < 41bp 0.524766181211173 0.728829723287266 NA NA prediction 0.408127084152188 Functional Gain - TUBGCP4 ENSG00000137822 CDS Human protein_coding chr15:43668795 chr15:43668794 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34188 0 0 1 0 1 TUBGCP4 chr15:43668823 5'GT 43668823 Upstream 30bp 31414 chr16 30196692 30196692 1 + C T COAD 30196693 + 30196673 30196713 41 CCCTGATCTGTGAGGCCAGCGGGGGAGGGGCCTTCCTGGTG CCCTGATCTGTGAGGCCAGTGGGGGAGGGGCCTTCCTGGTG < 41bp 0.505936299128013 0.709995415361135 NA NA prediction 0.408118232466243 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30196693 chr16:30196692 synonymous SNV . 0 20 hm7G_associated_SNPs_34192 0 0 0 0 1 CORO1A chr16:30196728 5'GT 30196728 Upstream 37bp 31415 chr6 7861759 7861759 1 + G A SKCM 7861760 + 7861740 7861780 41 GGCTGGAATTTGACATCACGGCCACTAGCAATCTGTGGGTT GGCTGGAATTTGACATCACAGCCACTAGCAATCTGTGGGTT < 41bp 0.500215777126807 0.704272965923209 NA NA prediction 0.408114377592804 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7861760 chr6:7861759 synonymous SNV . 0 20 hm7G_associated_SNPs_34193 0 0 0 0 2 BMP6 chr6:7861684 3'AG 7861684 Downstream 76bp 31416 chr6 7861759 7861759 1 + G A SKCM 7861760 + 7861740 7861780 41 GGCTGGAATTTGACATCACGGCCACTAGCAATCTGTGGGTT GGCTGGAATTTGACATCACAGCCACTAGCAATCTGTGGGTT < 41bp 0.500215777126807 0.704272965923209 NA NA prediction 0.408114377592804 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7861760 chr6:7861759 synonymous SNV . 0 20 hm7G_associated_SNPs_34193 0 0 0 0 2 BMP6 chr6:7861832 5'GT 7861832 Upstream 74bp 31417 chr11 118403725 118403725 1 + C T GBM 118403726 + 118403706 118403746 41 GCCCTGGTGCGTGCCAACCCGCCGGCCAATGTCACCTGGAT GCCCTGGTGCGTGCCAACCTGCCGGCCAATGTCACCTGGAT < 41bp 0.526518468216667 0.73057529187118 NA NA prediction 0.408113647309026 Functional Gain - TMEM25 ENSG00000149582 CDS Human protein_coding chr11:118403726 chr11:118403725 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_34194 0 0 0 0 1 TMEM25 chr11:118403632 3'AG 118403632 Downstream 94bp 31418 chr22 38039705 38039705 1 - G A STAD 38039704 - 38039684 38039724 41 TCGTATGGCTGTGACTACCCGGGCTGCCTCCTAGGCCTTGA TCGTATGGCTGTGACTACCTGGGCTGCCTCCTAGGCCTTGA < 41bp 0.499034233245206 0.704056235195337 NA NA prediction 0.408112470390673 Functional Gain - SH3BP1 ENSG00000100092 CDS Human antisense chr22:38039704 chr22:38039705 synonymous SNV . 0 20 hm7G_associated_SNPs_34195 0 0 0 0 2 LOC101927051 chr22:38039634 5'GT 38039634 Upstream 72bp 31419 chr22 38039705 38039705 1 - G A STAD 38039704 - 38039684 38039724 41 TCGTATGGCTGTGACTACCCGGGCTGCCTCCTAGGCCTTGA TCGTATGGCTGTGACTACCTGGGCTGCCTCCTAGGCCTTGA < 41bp 0.499034233245206 0.704056235195337 NA NA prediction 0.408112470390673 Functional Gain - SH3BP1 ENSG00000100092 CDS Human protein_coding chr22:38039704 chr22:38039705 synonymous SNV . 0 20 hm7G_associated_SNPs_34195 0 0 0 0 2 SH3BP1 chr22:38039768 3'AG 38039768 Downstream 64bp 31420 chr20 3553499 3553499 1 + C T UCEC 3553500 + 3553480 3553520 41 AGCAGCAGGACCTGGTATTCGGTGTGTGTGGAACACAGGGT AGCAGCAGGACCTGGTATTTGGTGTGTGTGGAACACAGGGT < 41bp 0.549681867308513 0.753737545811185 NA NA prediction 0.408111357005346 Functional Gain - ATRN ENSG00000088812 CDS Human protein_coding chr20:3553500 chr20:3553499 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_34196 0 0 1 0 1 ATRN chr20:3553598 5'GT 3553598 Upstream 100bp 31421 chr17 7984275 7984275 1 - C A SARC 7984274 - 7984254 7984294 41 CTGGCGAGTCTTTCTTCCTGGCCTGCCCAGCTATGTGCACA CTGGCGAGTCTTTCTTCCTTGCCTGCCCAGCTATGTGCACA < 41bp 0.34311502860209 0.704053425761634 NA NA prediction 0.408106851523268 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7984274 chr17:7984275 nonsynonymous SNV 0.939 5 20 hm7G_associated_SNPs_34198 0 0 0 0 2 ALOX12B chr17:7984202 5'GT 7984202 Upstream 74bp 31422 chr17 7984275 7984275 1 - C A SARC 7984274 - 7984254 7984294 41 CTGGCGAGTCTTTCTTCCTGGCCTGCCCAGCTATGTGCACA CTGGCGAGTCTTTCTTCCTTGCCTGCCCAGCTATGTGCACA < 41bp 0.34311502860209 0.704053425761634 NA NA prediction 0.408106851523268 Functional Gain - ALOX12B ENSG00000179477 CDS Human protein_coding chr17:7984274 chr17:7984275 nonsynonymous SNV 0.939 5 20 hm7G_associated_SNPs_34198 0 0 0 0 2 ALOX12B chr17:7984294 3'AG 7984294 Downstream 20bp 31423 chr5 149576690 149576690 1 + C T STAD 149576691 + 149576671 149576711 41 ACGTGCTCTTCTACCTCTTCGCCTCCCTCACCAGCGACCTA ACGTGCTCTTCTACCTCTTTGCCTCCCTCACCAGCGACCTA < 41bp 0.53798554203547 0.742038140703453 NA NA prediction 0.408105197335967 Functional Gain - SLC6A7 ENSG00000011083 CDS Human protein_coding chr5:149576691 chr5:149576690 synonymous SNV . 0 20 hm7G_associated_SNPs_34199 0 0 0 0 1 SLC6A7 chr5:149576605 3'AG 149576605 Downstream 86bp 31424 chr19 40711891 40711891 1 + G T LUAD 40711892 + 40711872 40711912 41 CAGGAGGAGCAGCTGCGGCGGCGGGAGCAGGAGCTGGCAGA CAGGAGGAGCAGCTGCGGCTGCGGGAGCAGGAGCTGGCAGA < 41bp 0.709347652825676 0.913399860838884 NA NA prediction 0.408104416026418 Functional Gain - MAP3K10 ENSG00000130758 CDS Human protein_coding chr19:40711892 chr19:40711891 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_34200 0 0 1 0 1 MAP3K10 chr19:40711818 3'AG 40711818 Downstream 74bp 31425 chr16 67574519 67574519 1 + G A STAD 67574520 + 67574500 67574540 41 CGTCAGCGCTGGAAACTACGGGGCCGAATTGAGGGTAGTGG CGTCAGCGCTGGAAACTACAGGGCCGAATTGAGGGTAGTGG < 41bp 0.548976827742496 0.753028571315271 NA NA prediction 0.40810348714555 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67574520 chr16:67574519 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_34202 0 0 1 0 2 RIPOR1 chr16:67574482 3'AG 67574482 Downstream 38bp 31426 chr16 67574519 67574519 1 + G A STAD 67574520 + 67574500 67574540 41 CGTCAGCGCTGGAAACTACGGGGCCGAATTGAGGGTAGTGG CGTCAGCGCTGGAAACTACAGGGCCGAATTGAGGGTAGTGG < 41bp 0.548976827742496 0.753028571315271 NA NA prediction 0.40810348714555 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67574520 chr16:67574519 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_34202 0 0 1 0 2 RIPOR1 chr16:67574607 5'GT 67574607 Upstream 89bp 31427 chr1 46876082 46876082 1 + C T SKCM 46876083 + 46876063 46876103 41 TTCCCAGCAAAGGTGATTTCGTGGACCCCTGCCTGGGGGAC TTCCCAGCAAAGGTGATTTTGTGGACCCCTGCCTGGGGGAC < 41bp 0.519480299696723 0.723531214197855 NA NA prediction 0.408101829002265 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46876083 chr1:46876082 synonymous SNV . 0 20 hm7G_associated_SNPs_34203 0 0 0 0 2 FAAH chr1:46876070 3'AG 46876070 Downstream 13bp 31428 chr1 46876082 46876082 1 + C T SKCM 46876083 + 46876063 46876103 41 TTCCCAGCAAAGGTGATTTCGTGGACCCCTGCCTGGGGGAC TTCCCAGCAAAGGTGATTTTGTGGACCCCTGCCTGGGGGAC < 41bp 0.519480299696723 0.723531214197855 NA NA prediction 0.408101829002265 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46876083 chr1:46876082 synonymous SNV . 0 20 hm7G_associated_SNPs_34203 0 0 0 0 2 FAAH chr1:46876169 5'GT 46876169 Upstream 88bp 31429 chr10 23292319 23292319 1 + C T LGG 23292320 + 23292300 23292340 41 CATCAAGTAACATAATTAACGATGGATTCTATGATTATGGT CATCAAGTAACATAATTAATGATGGATTCTATGATTATGGT < 41bp 0.507213359151042 0.711263972176126 NA NA prediction 0.408101226050168 Functional Gain - ARMC3 ENSG00000165309 CDS Human protein_coding chr10:23292320 chr10:23292319 synonymous SNV . 0 20 hm7G_associated_SNPs_34204 0 0 0 0 1 ARMC3 chr10:23292343 5'GT 23292343 Upstream 25bp 31430 chr3 133473430 133473430 1 + G A rs113868497 133473431 + 133473411 133473451 41 GCAAGAAGTCCTGCCACACGGGTCTAGGCAGGTCCGCTGGG GCAAGAAGTCCTGCCACACAGGTCTAGGCAGGTCCGCTGGG < 41bp 0.576956840371374 0.781005072839448 NA NA prediction 0.408096464936149 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133473431 chr3:133473430 synonymous SNV . 0 20 hm7G_associated_SNPs_34205 1 0 1 0 2 TF chr3:133473339 3'AG 133473339 Downstream 92bp 31431 chr3 133473430 133473430 1 + G A rs113868497 133473431 + 133473411 133473451 41 GCAAGAAGTCCTGCCACACGGGTCTAGGCAGGTCCGCTGGG GCAAGAAGTCCTGCCACACAGGTCTAGGCAGGTCCGCTGGG < 41bp 0.576956840371374 0.781005072839448 NA NA prediction 0.408096464936149 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133473431 chr3:133473430 synonymous SNV . 0 20 hm7G_associated_SNPs_34205 1 0 1 0 2 TF chr3:133473515 5'GT 133473515 Upstream 86bp 31432 chr17 25931720 25931720 1 + C T PRAD 25931721 + 25931701 25931741 41 CTTAGGCTCGATGACCAGCCGAAAGCAGATGTGTTGGAAGC CTTAGGCTCGATGACCAGCTGAAAGCAGATGTGTTGGAAGC < 41bp 0.540265960193412 0.74431248873829 NA NA prediction 0.408093057089757 Functional Gain - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25931721 chr17:25931720 nonsynonymous SNV 0.835 0 20 hm7G_associated_SNPs_34206 0 0 1 0 2 KSR1 chr17:25931706 3'AG 25931706 Downstream 15bp 31433 chr17 25931720 25931720 1 + C T PRAD 25931721 + 25931701 25931741 41 CTTAGGCTCGATGACCAGCCGAAAGCAGATGTGTTGGAAGC CTTAGGCTCGATGACCAGCTGAAAGCAGATGTGTTGGAAGC < 41bp 0.540265960193412 0.74431248873829 NA NA prediction 0.408093057089757 Functional Gain - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25931721 chr17:25931720 nonsynonymous SNV 0.835 0 20 hm7G_associated_SNPs_34206 0 0 1 0 2 KSR1 chr17:25931754 5'GT 25931754 Upstream 35bp 31434 chr1 220279329 220279329 1 + C T STAD 220279330 + 220279310 220279350 41 GTGACCATGGCAAAAGGAACGGGATTGGTTCACACAGCCCC GTGACCATGGCAAAAGGAATGGGATTGGTTCACACAGCCCC < 41bp 0.500876808296604 0.704922552037405 NA NA prediction 0.408091487481602 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279330 chr1:220279329 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_34207 0 0 1 0 2 IARS2 chr1:220279233 3'AG 220279233 Downstream 97bp 31435 chr1 220279329 220279329 1 + C T STAD 220279330 + 220279310 220279350 41 GTGACCATGGCAAAAGGAACGGGATTGGTTCACACAGCCCC GTGACCATGGCAAAAGGAATGGGATTGGTTCACACAGCCCC < 41bp 0.500876808296604 0.704922552037405 NA NA prediction 0.408091487481602 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220279330 chr1:220279329 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_34207 0 0 1 0 2 IARS2 chr1:220279402 5'GT 220279402 Upstream 74bp 31436 chr12 106715425 106715425 1 + C T STAD 106715426 + 106715406 106715446 41 TGGGAAAGCTGTGTGCTCCCGTGCGAGATAATGATATCAGA TGGGAAAGCTGTGTGCTCCTGTGCGAGATAATGATATCAGA < 41bp 0.509473695262956 0.71351924192084 NA NA prediction 0.408091093315768 Functional Gain - TCP11L2 ENSG00000166046 CDS Human protein_coding chr12:106715426 chr12:106715425 synonymous SNV . 0 20 hm7G_associated_SNPs_34209 0 0 0 0 1 TCP11L2 chr12:106715484 5'GT 106715484 Upstream 60bp 31437 chr4 1360197 1360197 1 + C T UCEC 1360198 + 1360178 1360218 41 GGTATGAGCCACACATCCCCGACCACTTGCGGCCTGAGTAT GGTATGAGCCACACATCCCTGACCACTTGCGGCCTGAGTAT < 41bp 0.529868839302016 0.733914002848846 NA NA prediction 0.40809032709366 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1360198 chr4:1360197 synonymous SNV . 0 20 hm7G_associated_SNPs_34211 0 0 1 0 2 UVSSA chr4:1360108 3'AG 1360108 Downstream 90bp 31438 chr4 1360197 1360197 1 + C T UCEC 1360198 + 1360178 1360218 41 GGTATGAGCCACACATCCCCGACCACTTGCGGCCTGAGTAT GGTATGAGCCACACATCCCTGACCACTTGCGGCCTGAGTAT < 41bp 0.529868839302016 0.733914002848846 NA NA prediction 0.40809032709366 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1360198 chr4:1360197 synonymous SNV . 0 20 hm7G_associated_SNPs_34211 0 0 1 0 2 UVSSA chr4:1360219 5'GT 1360219 Upstream 23bp 31439 chr1 15370623 15370623 1 + C T GBM 15370624 + 15370604 15370644 41 GCTGGACCTCAAGGACAACCGGATGAAGGAGCTGGAGGCCG GCTGGACCTCAAGGACAACTGGATGAAGGAGCTGGAGGCCG < 41bp 0.497006182502078 0.704043548466444 NA NA prediction 0.408087096932887 Functional Gain - KAZN ENSG00000189337 CDS Human protein_coding chr1:15370624 chr1:15370623 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_34213 0 0 1 0 1 KAZN chr1:15370655 5'GT 15370655 Upstream 33bp 31440 chr12 132325334 132325334 1 + C T BLCA 132325335 + 132325315 132325355 41 TGGCCCACGCCTTCTTCCCCGGCCACCACCACACCGCCGGG TGGCCCACGCCTTCTTCCCTGGCCACCACCACACCGCCGGG < 41bp 0.518944130035708 0.722986097508524 NA NA prediction 0.40808393494563 Functional Gain - MMP17 ENSG00000198598 CDS Human protein_coding chr12:132325335 chr12:132325334 synonymous SNV . 0 20 hm7G_associated_SNPs_34214 0 0 0 0 1 MMP17 chr12:132325401 5'GT 132325401 Upstream 68bp 31441 chrX 107316583 107316583 1 + C T SKCM 107316584 + 107316564 107316604 41 GCAATAGTTCCTGCGAAATCGATCTCACTTCTTCACGTGAG GCAATAGTTCCTGCGAAATTGATCTCACTTCTTCACGTGAG < 41bp 0.528076001287982 0.732117671897477 NA NA prediction 0.40808334121899 Functional Gain - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107316584 chrX:107316583 synonymous SNV . 0 20 hm7G_associated_SNPs_34215 0 0 0 0 1 VSIG1 chrX:107316599 5'GT 107316599 Upstream 17bp 31442 chr5 94918892 94918892 1 + G T LGG 94918893 + 94918873 94918913 41 TTTCACACATCTCTTTATTGGCTTGAAAAAGTAAGTAACTA TTTCACACATCTCTTTATTTGCTTGAAAAAGTAAGTAACTA < 41bp 0.392682546085378 0.704037550996308 NA NA prediction 0.408075101992616 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94918893 chr5:94918892 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_34217 0 0 1 0 1 ARSK chr5:94918902 5'GT 94918902 Upstream 11bp 31443 chr5 148679880 148679880 1 + G A rs80089509 148679881 + 148679861 148679901 41 ACACAGCAGACCTCCACTCGGGGCCCAGCTTCGTGGAATCC ACACAGCAGACCTCCACTCAGGGCCCAGCTTCGTGGAATCC < 41bp 0.537776883363596 0.741813114441296 NA NA prediction 0.408072462155399 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148679881 chr5:148679880 synonymous SNV . 0 20 hm7G_associated_SNPs_34218 0 0 0 0 2 AFAP1L1 chr5:148679834 3'AG 148679834 Downstream 47bp 31444 chr5 148679880 148679880 1 + G A rs80089509 148679881 + 148679861 148679901 41 ACACAGCAGACCTCCACTCGGGGCCCAGCTTCGTGGAATCC ACACAGCAGACCTCCACTCAGGGCCCAGCTTCGTGGAATCC < 41bp 0.537776883363596 0.741813114441296 NA NA prediction 0.408072462155399 Functional Gain - AFAP1L1 ENSG00000157510 CDS Human protein_coding chr5:148679881 chr5:148679880 synonymous SNV . 0 20 hm7G_associated_SNPs_34218 0 0 0 0 2 AFAP1L1 chr5:148679917 5'GT 148679917 Upstream 38bp 31445 chr9 4576650 4576650 1 + C T SKCM 4576651 + 4576631 4576671 41 TCACTCGATTCGTGTTACCCGTTGGTGCAACAATCAACATG TCACTCGATTCGTGTTACCTGTTGGTGCAACAATCAACATG < 41bp 0.526562434002307 0.730596613688861 NA NA prediction 0.408068359373108 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4576651 chr9:4576650 synonymous SNV . 0 20 hm7G_associated_SNPs_34219 0 0 0 0 1 SLC1A1 chr9:4576569 3'AG 4576569 Downstream 82bp 31446 chr21 48064360 48064360 1 + C T COAD 48064361 + 48064341 48064381 41 GAGTACGACCCCGAGGACACGTGGCAGGATGAAGAGTACTT GAGTACGACCCCGAGGACATGTGGCAGGATGAAGAGTACTT < 41bp 0.504086891063892 0.7081209710577 NA NA prediction 0.408068159987615 Functional Gain - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48064361 chr21:48064360 nonsynonymous SNV 0.719 1 20 hm7G_associated_SNPs_34220 0 0 1 0 1 PRMT2 chr21:48064400 5'GT 48064400 Upstream 41bp 31447 chr16 67316159 67316159 1 + C T CESC 67316160 + 67316140 67316180 41 ATGCAGCAGGTGCTAGACTCGCCATGGCTGGCATGGCTACA ATGCAGCAGGTGCTAGACTTGCCATGGCTGGCATGGCTACA < 41bp 0.488654544209668 0.704033512137732 NA NA prediction 0.408067024275463 Functional Gain - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67316160 chr16:67316159 nonsynonymous SNV 0.503 3 20 hm7G_associated_SNPs_34221 0 0 0 0 2 PLEKHG4 chr16:67316104 3'AG 67316104 Downstream 56bp 31448 chr16 67316159 67316159 1 + C T CESC 67316160 + 67316140 67316180 41 ATGCAGCAGGTGCTAGACTCGCCATGGCTGGCATGGCTACA ATGCAGCAGGTGCTAGACTTGCCATGGCTGGCATGGCTACA < 41bp 0.488654544209668 0.704033512137732 NA NA prediction 0.408067024275463 Functional Gain - PLEKHG4 ENSG00000196155 CDS Human protein_coding chr16:67316160 chr16:67316159 nonsynonymous SNV 0.503 3 20 hm7G_associated_SNPs_34221 0 0 0 0 2 PLEKHG4 chr16:67316252 5'GT 67316252 Upstream 94bp 31449 chr3 51708504 51708504 1 + C T COAD 51708505 + 51708485 51708525 41 GCTCTATGGTGAGACTGGGCGGCTTTTCACTGAGAGCTGCA GCTCTATGGTGAGACTGGGTGGCTTTTCACTGAGAGCTGCA < 41bp 0.515670265695217 0.719703581330017 NA NA prediction 0.408066631269599 Functional Gain - TEX264 ENSG00000164081 CDS Human protein_coding chr3:51708505 chr3:51708504 nonsynonymous SNV 0.897 2 20 hm7G_associated_SNPs_34222 0 0 1 0 1 TEX264 chr3:51708578 5'GT 51708578 Upstream 75bp 31450 chr20 32371590 32371590 1 + G A CESC 32371591 + 32371571 32371611 41 CTGCCCACCCACGGCAGCGGGGGCAGGTTCAAGTGCCAAGT CTGCCCACCCACGGCAGCGAGGGCAGGTTCAAGTGCCAAGT < 41bp 0.477310445688514 0.704031882442242 NA NA prediction 0.408063764884483 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32371591 chr20:32371590 nonsynonymous SNV 0.895 2 20 hm7G_associated_SNPs_34223 0 0 0 2 2 ZNF341 chr20:32371538 3'AG 32371538 Downstream 53bp 31451 chr20 32371590 32371590 1 + G A CESC 32371591 + 32371571 32371611 41 CTGCCCACCCACGGCAGCGGGGGCAGGTTCAAGTGCCAAGT CTGCCCACCCACGGCAGCGAGGGCAGGTTCAAGTGCCAAGT < 41bp 0.477310445688514 0.704031882442242 NA NA prediction 0.408063764884483 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32371591 chr20:32371590 nonsynonymous SNV 0.895 2 20 hm7G_associated_SNPs_34223 0 0 0 2 2 ZNF341 chr20:32371670 5'GT 32371670 Upstream 81bp 31452 chr2 207454216 207454216 1 + C T UCEC 207454217 + 207454197 207454237 41 CTGCGGGAAGGATGGAGACCGGTGGATTCAGTGCAGCAAAC CTGCGGGAAGGATGGAGACTGGTGGATTCAGTGCAGCAAAC < 41bp 0.557004181873328 0.761034136189805 NA NA prediction 0.408059908632955 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207454217 chr2:207454216 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_34225 0 0 0 0 2 ADAM23 chr2:207454133 3'AG 207454133 Downstream 84bp 31453 chr2 207454216 207454216 1 + C T UCEC 207454217 + 207454197 207454237 41 CTGCGGGAAGGATGGAGACCGGTGGATTCAGTGCAGCAAAC CTGCGGGAAGGATGGAGACTGGTGGATTCAGTGCAGCAAAC < 41bp 0.557004181873328 0.761034136189805 NA NA prediction 0.408059908632955 Functional Gain - ADAM23 ENSG00000114948 CDS Human protein_coding chr2:207454217 chr2:207454216 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_34225 0 0 0 0 2 ADAM23 chr2:207454238 5'GT 207454238 Upstream 23bp 31454 chr22 26736438 26736438 1 + C T SARC 26736439 + 26736419 26736459 41 GTGACATCTTGACCATCTACGATGGCGACGAGGTCATGCCC GTGACATCTTGACCATCTATGATGGCGACGAGGTCATGCCC < 41bp 0.513727854692969 0.71775761450632 NA NA prediction 0.408059519626702 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26736439 chr22:26736438 synonymous SNV . 0 20 hm7G_associated_SNPs_34226 0 0 0 0 1 SEZ6L chr22:26736402 3'AG 26736402 Downstream 37bp 31455 chr2 228389490 228389490 1 + G T SARC 228389491 + 228389471 228389511 41 TTTGTAGTCCCCAGTTGTAGGTCGTTCTCAAGGGCAGCAGC TTTGTAGTCCCCAGTTGTATGTCGTTCTCAAGGGCAGCAGC < 41bp 0.376722864684229 0.70402926238439 NA NA prediction 0.408058524768779 Functional Gain - AGFG1 ENSG00000173744 CDS Human protein_coding chr2:228389491 chr2:228389490 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_34227 0 0 1 0 1 AGFG1 chr2:228389478 3'AG 228389478 Downstream 13bp 31456 chr7 99917282 99917282 1 + C T STAD 99917283 + 99917263 99917303 41 CCACTCTCACATACCCTTGCGCCCTAAGCATTGGTTCCAGT CCACTCTCACATACCCTTGTGCCCTAAGCATTGGTTCCAGT < 41bp 0.515682324801647 0.719710578709036 NA NA prediction 0.408056507814778 Functional Gain - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99917283 chr7:99917282 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_34229 0 0 0 0 1 SPDYE3 chr7:99917188 3'AG 99917188 Downstream 95bp 31457 chr1 248031307 248031307 1 + G A SKCM 248031308 + 248031288 248031328 41 AAGCAGAGAACATCCCCATGGAACTGAAGACAGCATGCTGC AAGCAGAGAACATCCCCATAGAACTGAAGACAGCATGCTGC < 41bp 0.506719538568967 0.71074721214542 NA NA prediction 0.408055347152906 Functional Gain - TRIM58 ENSG00000162722 CDS Human protein_coding chr1:248031308 chr1:248031307 nonsynonymous SNV 0.191 0 20 hm7G_associated_SNPs_34230 0 0 0 0 1 TRIM58 chr1:248031365 5'GT 248031365 Upstream 59bp 31458 chr12 72338392 72338392 1 + C T LUSC 72338393 + 72338373 72338413 41 GGATGTGCCCTGGTTCCCTCGGAAGATCTCTGAGTTAGACA GGATGTGCCCTGGTTCCCTTGGAAGATCTCTGAGTTAGACA < 41bp 0.531988858717342 0.736015664486009 NA NA prediction 0.408053611537334 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338393 chr12:72338392 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_34231 0 0 0 0 2 TPH2 chr12:72338366 3'AG 72338366 Downstream 27bp 31459 chr12 72338392 72338392 1 + C T LUSC 72338393 + 72338373 72338413 41 GGATGTGCCCTGGTTCCCTCGGAAGATCTCTGAGTTAGACA GGATGTGCCCTGGTTCCCTTGGAAGATCTCTGAGTTAGACA < 41bp 0.531988858717342 0.736015664486009 NA NA prediction 0.408053611537334 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72338393 chr12:72338392 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_34231 0 0 0 0 2 TPH2 chr12:72338466 5'GT 72338466 Upstream 75bp 31460 chr22 17525814 17525814 1 + G A UCEC 17525815 + 17525795 17525835 41 TGGGGACGTCTGCGACACCGGGGACAGAGCAACTGTGGATG TGGGGACGTCTGCGACACCAGGGACAGAGCAACTGTGGATG < 41bp 0.565532782399773 0.769558999564289 NA NA prediction 0.408052434329031 Functional Gain - CECR7 ENSG00000237438 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr22:17525815 chr22:17525814 . . 0 20 hm7G_associated_SNPs_34232 0 0 1 0 1 CECR7 chr22:17525890 5'GT 17525890 Upstream 77bp 31461 chr1 203013208 203013208 1 + G A UCEC 203013209 + 203013189 203013229 41 CACTGTTTGAGCACCACAAGGCCCTGGATGAGAAGGTGCCC CACTGTTTGAGCACCACAAAGCCCTGGATGAGAAGGTGCCC < 41bp 0.478806552324084 0.704024158071656 NA NA prediction 0.408048316143312 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203013209 chr1:203013208 synonymous SNV . 0 20 hm7G_associated_SNPs_34233 0 0 1 0 1 PPFIA4 chr1:203013223 5'GT 203013223 Upstream 16bp 31462 chr1 9322144 9322144 1 + G A CESC 9322145 + 9322125 9322165 41 CAGCTTCTATGAGGAGTACGGTGTCATTCGCGACGTCCTCC CAGCTTCTATGAGGAGTACAGTGTCATTCGCGACGTCCTCC < 41bp 0.51516490936473 0.719188686649975 NA NA prediction 0.40804755457049 Functional Gain - H6PD ENSG00000049239 CDS Human protein_coding chr1:9322145 chr1:9322144 nonsynonymous SNV 0.688 5 20 hm7G_associated_SNPs_34234 0 0 0 0 1 H6PD chr1:9322118 3'AG 9322118 Downstream 27bp 31463 chr20 37001732 37001732 1 + C T HNSC 37001733 + 37001713 37001753 41 CAGGCAGAGCTGTTGGAAGCGCTCCTCAACTATTACATCCT CAGGCAGAGCTGTTGGAAGTGCTCCTCAACTATTACATCCT < 41bp 0.51936530204988 0.723387887910543 NA NA prediction 0.408045171721326 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:37001733 chr20:37001732 nonsynonymous SNV 0.037 0 20 hm7G_associated_SNPs_34235 0 0 0 0 2 LBP chr20:37001716 3'AG 37001716 Downstream 17bp 31464 chr20 37001732 37001732 1 + C T HNSC 37001733 + 37001713 37001753 41 CAGGCAGAGCTGTTGGAAGCGCTCCTCAACTATTACATCCT CAGGCAGAGCTGTTGGAAGTGCTCCTCAACTATTACATCCT < 41bp 0.51936530204988 0.723387887910543 NA NA prediction 0.408045171721326 Functional Gain - LBP ENSG00000129988 CDS Human protein_coding chr20:37001733 chr20:37001732 nonsynonymous SNV 0.037 0 20 hm7G_associated_SNPs_34235 0 0 0 0 2 LBP chr20:37001779 5'GT 37001779 Upstream 48bp 31465 chr6 167592601 167592601 1 + G A COAD 167592602 + 167592582 167592622 41 GGAGCAGACGGCAGCAGCCGGAGTTGCTGGTGAGCAGGGTA GGAGCAGACGGCAGCAGCCAGAGTTGCTGGTGAGCAGGGTA < 41bp 0.526439346162116 0.730461751417867 NA NA prediction 0.408044810511503 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167592602 chr6:167592601 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_34236 0 0 0 0 1 TCP10L2 chr6:167592610 5'GT 167592610 Upstream 10bp 31466 chr11 46748082 46748082 1 + G A SKCM 46748083 + 46748063 46748103 41 AGGAGACAGGAGATGGGCTGGATGAGGACTCAGACAGGGCC AGGAGACAGGAGATGGGCTAGATGAGGACTCAGACAGGGCC < 41bp 0.554062906807198 0.758084973164212 NA NA prediction 0.408044132714027 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46748083 chr11:46748082 synonymous SNV . 0 20 hm7G_associated_SNPs_34238 0 0 1 0 2 F2 chr11:46748048 3'AG 46748048 Downstream 35bp 31467 chr11 46748082 46748082 1 + G A SKCM 46748083 + 46748063 46748103 41 AGGAGACAGGAGATGGGCTGGATGAGGACTCAGACAGGGCC AGGAGACAGGAGATGGGCTAGATGAGGACTCAGACAGGGCC < 41bp 0.554062906807198 0.758084973164212 NA NA prediction 0.408044132714027 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46748083 chr11:46748082 synonymous SNV . 0 20 hm7G_associated_SNPs_34238 0 0 1 0 2 F2 chr11:46748176 5'GT 46748176 Upstream 95bp 31468 chr16 1826089 1826089 1 + G T STAD 1826090 + 1826070 1826110 41 CGCTGGAGGCCTGCAGCACGGAGCGGGAGCGCATGGGCCTC CGCTGGAGGCCTGCAGCACTGAGCGGGAGCGCATGGGCCTC < 41bp 0.69607056693228 0.900090201361369 NA NA prediction 0.408039268858176 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1826090 chr16:1826089 synonymous SNV . 0 20 hm7G_associated_SNPs_34239 0 0 0 0 1 EME2 chr16:1826069 3'AG 1826069 Downstream 21bp 31469 chr2 233393217 233393217 1 + C T COAD 233393218 + 233393198 233393238 41 CCCTGTCCCCCAGCAATGACGGCTCCTTCCAGATCTCCTAC CCCTGTCCCCCAGCAATGATGGCTCCTTCCAGATCTCCTAC < 41bp 0.507668112454351 0.711686031639765 NA NA prediction 0.408035838370828 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233393218 chr2:233393217 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_34241 0 0 0 0 1 CHRND chr2:233393211 3'AG 233393211 Downstream 7bp 31470 chr5 61747671 61747671 1 + C T HNSC 61747672 + 61747652 61747692 41 TAAAGTCCAGGATGATCTTCGACAGCACAGAGCATTACTTA TAAAGTCCAGGATGATCTTTGACAGCACAGAGCATTACTTA < 41bp 0.501714963091487 0.705732016386169 NA NA prediction 0.408034106589364 Functional Gain - IPO11 ENSG00000086200 CDS Human protein_coding chr5:61747672 chr5:61747671 stopgain 1.000 1 20 hm7G_associated_SNPs_34243 0 0 1 0 1 IPO11 chr5:61747760 5'GT 61747760 Upstream 90bp 31471 chr10 71119787 71119787 1 + G A UCEC 71119788 + 71119768 71119808 41 CCCAGAGAACATCGTGCACGGCAGTGGAAGCCAGGTGGGTC CCCAGAGAACATCGTGCACAGCAGTGGAAGCCAGGTGGGTC < 41bp 0.55596704142665 0.759982796658157 NA NA prediction 0.408031510463013 Functional Gain - HK1 ENSG00000156515 CDS Human protein_coding chr10:71119788 chr10:71119787 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34246 0 0 1 0 1 HK1 chr10:71119801 5'GT 71119801 Upstream 15bp 31472 chr12 121622169 121622169 1 + C T BLCA 121622170 + 121622150 121622190 41 GCCCTCCATGACACACCCCCGATTCCTGGACAACCAGAGGA GCCCTCCATGACACACCCCTGATTCCTGGACAACCAGAGGA < 41bp 0.52870117608843 0.732716863113415 NA NA prediction 0.408031374049971 Functional Gain - P2RX7 ENSG00000089041 CDS Human protein_coding chr12:121622170 chr12:121622169 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_34247 0 0 0 0 1 P2RX7 chr12:121622108 3'AG 121622108 Downstream 62bp 31473 chr19 18968249 18968249 1 + C T LGG 18968250 + 18968230 18968270 41 GCTGGGCATCCGGCCCATCCGCCTGCAGGTCCAGTACCGGA GCTGGGCATCCGGCCCATCTGCCTGCAGGTCCAGTACCGGA < 41bp 0.53585713782176 0.73986516879211 NA NA prediction 0.408016061940701 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18968250 chr19:18968249 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34249 0 0 1 0 1 UPF1 chr19:18968342 5'GT 18968342 Upstream 94bp 31474 chr3 38350536 38350536 1 + C T BLCA 38350537 + 38350517 38350557 41 CCGTGTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGG CCGTGTTGCTGACAGGGATTGCCTACAGTCTTCCCCACTGG < 41bp 0.528674147330999 0.732681780609583 NA NA prediction 0.408015266557169 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350537 chr3:38350536 synonymous SNV . 0 20 hm7G_associated_SNPs_34250 0 0 0 2 3 SLC22A14 chr3:38350445 3'AG 38350445 Downstream 92bp 31475 chr3 38350536 38350536 1 + C T BLCA 38350537 + 38350517 38350557 41 CCGTGTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGG CCGTGTTGCTGACAGGGATTGCCTACAGTCTTCCCCACTGG < 41bp 0.528674147330999 0.732681780609583 NA NA prediction 0.408015266557169 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350537 chr3:38350536 synonymous SNV . 0 20 hm7G_associated_SNPs_34250 0 0 0 2 3 SLC22A14 chr3:38350572 5'GT 38350572 Upstream 37bp 31476 chr3 38350536 38350536 1 + C T BLCA 38350537 + 38350517 38350557 41 CCGTGTTGCTGACAGGGATCGCCTACAGTCTTCCCCACTGG CCGTGTTGCTGACAGGGATTGCCTACAGTCTTCCCCACTGG < 41bp 0.528674147330999 0.732681780609583 NA NA prediction 0.408015266557169 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350537 chr3:38350536 synonymous SNV . 0 20 hm7G_associated_SNPs_34250 0 0 0 2 3 SLC22A14 chr3:38350613 5'GT 38350613 Upstream 78bp 31477 chr6 36172522 36172522 1 + G T OV 36172523 + 36172503 36172543 41 ATTGGCTGTTGAAGCGGCAGGCACGGAATGGTGTCCCTCTT ATTGGCTGTTGAAGCGGCATGCACGGAATGGTGTCCCTCTT < 41bp 0.708897818947952 0.912903729233709 NA NA prediction 0.408011820571514 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36172523 chr6:36172522 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_34251 0 0 1 0 2 BRPF3 chr6:36172435 3'AG 36172435 Downstream 88bp 31478 chr6 36172522 36172522 1 + G T OV 36172523 + 36172503 36172543 41 ATTGGCTGTTGAAGCGGCAGGCACGGAATGGTGTCCCTCTT ATTGGCTGTTGAAGCGGCATGCACGGAATGGTGTCCCTCTT < 41bp 0.708897818947952 0.912903729233709 NA NA prediction 0.408011820571514 Functional Gain - BRPF3 ENSG00000096070 CDS Human protein_coding chr6:36172523 chr6:36172522 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_34251 0 0 1 0 2 BRPF3 chr6:36172591 5'GT 36172591 Upstream 70bp 31479 chr15 67878248 67878248 1 + C T COAD 67878249 + 67878229 67878269 41 CTGCAAGCCTCCTGGGGAACGGAACATACATGGCCTGAAGG CTGCAAGCCTCCTGGGGAATGGAACATACATGGCCTGAAGG < 41bp 0.529694029349694 0.733698896858184 NA NA prediction 0.408009735016982 Functional Gain - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67878249 chr15:67878248 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34252 0 0 1 0 2 MAP2K5 chr15:67878228 3'AG 67878228 Downstream 21bp 31480 chr15 67878248 67878248 1 + C T COAD 67878249 + 67878229 67878269 41 CTGCAAGCCTCCTGGGGAACGGAACATACATGGCCTGAAGG CTGCAAGCCTCCTGGGGAATGGAACATACATGGCCTGAAGG < 41bp 0.529694029349694 0.733698896858184 NA NA prediction 0.408009735016982 Functional Gain - MAP2K5 ENSG00000137764 CDS Human protein_coding chr15:67878249 chr15:67878248 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34252 0 0 1 0 2 MAP2K5 chr15:67878268 5'GT 67878268 Upstream 21bp 31481 chr3 50223716 50223716 1 + G A COAD 50223717 + 50223697 50223737 41 GGGCTATCCTCATCCAGGCGGAGCCGCCGGCAGGACGTCCG GGGCTATCCTCATCCAGGCAGAGCCGCCGGCAGGACGTCCG < 41bp 0.554017154355959 0.758020953049875 NA NA prediction 0.408007597387831 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50223717 chr3:50223716 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34253 0 0 1 0 2 SEMA3F chr3:50223714 3'AG 50223714 Downstream 3bp 31482 chr3 50223716 50223716 1 + G A COAD 50223717 + 50223697 50223737 41 GGGCTATCCTCATCCAGGCGGAGCCGCCGGCAGGACGTCCG GGGCTATCCTCATCCAGGCAGAGCCGCCGGCAGGACGTCCG < 41bp 0.554017154355959 0.758020953049875 NA NA prediction 0.408007597387831 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50223717 chr3:50223716 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34253 0 0 1 0 2 SEMA3F chr3:50223781 5'GT 50223781 Upstream 66bp 31483 chr1 2493252 2493252 1 + G A SKCM 2493253 + 2493233 2493273 41 GTGAAAAGAAGAAAGCCAAGGGGTGAGCACACGGCGGCCCC GTGAAAAGAAGAAAGCCAAAGGGTGAGCACACGGCGGCCCC < 41bp 0.561230632567591 0.76523292261512 NA NA prediction 0.408004580095058 Functional Gain - TNFRSF14 ENSG00000157873 CDS Human protein_coding chr1:2493253 chr1:2493252 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_34256 0 0 1 0 1 TNFRSF14 chr1:2493254 5'GT 2493254 Upstream 3bp 31484 chr1 10231208 10231208 1 + C T READ 10231209 + 10231189 10231229 41 TTCCTAGGAGCTTGGACCCCGATTGGCTGCAATGCTGAACT TTCCTAGGAGCTTGGACCCTGATTGGCTGCAATGCTGAACT < 41bp 0.527133249917574 0.731135028912238 NA NA prediction 0.408003557989326 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231209 chr1:10231208 stopgain 0.998 1 20 hm7G_associated_SNPs_34257 0 0 1 1 2 UBE4B chr1:10231163 3'AG 10231163 Downstream 46bp 31485 chr1 10231208 10231208 1 + C T READ 10231209 + 10231189 10231229 41 TTCCTAGGAGCTTGGACCCCGATTGGCTGCAATGCTGAACT TTCCTAGGAGCTTGGACCCTGATTGGCTGCAATGCTGAACT < 41bp 0.527133249917574 0.731135028912238 NA NA prediction 0.408003557989326 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10231209 chr1:10231208 stopgain 0.998 1 20 hm7G_associated_SNPs_34257 0 0 1 1 2 UBE4B chr1:10231196 3'AG 10231196 Downstream 13bp 31486 chr9 101801014 101801014 1 + C T LUSC 101801015 + 101800995 101801035 41 CCTGAGCTGGTGGGGCCTCCGGTTGGTATCTACAGCTGCCC CCTGAGCTGGTGGGGCCTCTGGTTGGTATCTACAGCTGCCC < 41bp 0.493879222452421 0.704001382295198 NA NA prediction 0.408002764590396 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101801015 chr9:101801014 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_34258 0 0 1 0 2 COL15A1 chr9:101800950 3'AG 101800950 Downstream 65bp 31487 chr9 101801014 101801014 1 + C T LUSC 101801015 + 101800995 101801035 41 CCTGAGCTGGTGGGGCCTCCGGTTGGTATCTACAGCTGCCC CCTGAGCTGGTGGGGCCTCTGGTTGGTATCTACAGCTGCCC < 41bp 0.493879222452421 0.704001382295198 NA NA prediction 0.408002764590396 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101801015 chr9:101801014 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_34258 0 0 1 0 2 COL15A1 chr9:101801015 5'GT 101801015 Upstream 2bp 31488 chr3 13659594 13659594 1 + C T UCEC 13659595 + 13659575 13659615 41 GTTTCAGAGGCAGAGATGGCGGGCCGAGAGGCCCTGTCACT GTTTCAGAGGCAGAGATGGTGGGCCGAGAGGCCCTGTCACT < 41bp 0.534811731846427 0.738811847853152 NA NA prediction 0.408000232013449 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13659595 chr3:13659594 nonsynonymous SNV 0.188 0 20 hm7G_associated_SNPs_34260 0 0 0 0 1 FBLN2 chr3:13659576 3'AG 13659576 Downstream 19bp 31489 chr15 80465431 80465431 1 + C T LGG 80465432 + 80465412 80465452 41 TTTGGGACCACTGTCTCTCCGTGGGTGGTGCCCATGGATGC TTTGGGACCACTGTCTCTCTGTGGGTGGTGCCCATGGATGC < 41bp 0.512011200713401 0.716010823495607 NA NA prediction 0.407999245564411 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80465432 chr15:80465431 nonsynonymous SNV 0.759 5 20 hm7G_associated_SNPs_34262 2 0 1 0 2 FAH chr15:80465356 3'AG 80465356 Downstream 76bp 31490 chr15 80465431 80465431 1 + C T LGG 80465432 + 80465412 80465452 41 TTTGGGACCACTGTCTCTCCGTGGGTGGTGCCCATGGATGC TTTGGGACCACTGTCTCTCTGTGGGTGGTGCCCATGGATGC < 41bp 0.512011200713401 0.716010823495607 NA NA prediction 0.407999245564411 Functional Gain - FAH ENSG00000103876 CDS Human protein_coding chr15:80465432 chr15:80465431 nonsynonymous SNV 0.759 5 20 hm7G_associated_SNPs_34262 2 0 1 0 2 FAH chr15:80465486 5'GT 80465486 Upstream 56bp 31491 chr7 34818118 34818118 1 + C T UCEC 34818119 + 34818099 34818139 41 CTTGACAGATATTAATTGGCGATTCACTGGAGACTTCACGG CTTGACAGATATTAATTGGTGATTCACTGGAGACTTCACGG < 41bp 0.499280723696097 0.703996638983209 NA NA prediction 0.407993277966417 Functional Gain - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34818119 chr7:34818118 stopgain 0.976 1 20 hm7G_associated_SNPs_34263 0 0 0 0 3 NPSR1 chr7:34818074 3'AG 34818074 Downstream 45bp 31492 chr7 34818118 34818118 1 + C T UCEC 34818119 + 34818099 34818139 41 CTTGACAGATATTAATTGGCGATTCACTGGAGACTTCACGG CTTGACAGATATTAATTGGTGATTCACTGGAGACTTCACGG < 41bp 0.499280723696097 0.703996638983209 NA NA prediction 0.407993277966417 Functional Gain - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34818119 chr7:34818118 stopgain 0.976 1 20 hm7G_associated_SNPs_34263 0 0 0 0 3 NPSR1 chr7:34818107 3'AG 34818107 Downstream 12bp 31493 chr7 34818118 34818118 1 + C T UCEC 34818119 + 34818099 34818139 41 CTTGACAGATATTAATTGGCGATTCACTGGAGACTTCACGG CTTGACAGATATTAATTGGTGATTCACTGGAGACTTCACGG < 41bp 0.499280723696097 0.703996638983209 NA NA prediction 0.407993277966417 Functional Gain - NPSR1 ENSG00000187258 CDS Human protein_coding chr7:34818119 chr7:34818118 stopgain 0.976 1 20 hm7G_associated_SNPs_34263 0 0 0 0 3 NPSR1 chr7:34818177 5'GT 34818177 Upstream 60bp 31494 chr10 135003172 135003172 1 + C T BLCA 135003173 + 135003153 135003193 41 TCCAGCCACCCCCTGCCAACGGTGAGTGTGTGGGTTCCCCT TCCAGCCACCCCCTGCCAATGGTGAGTGTGTGGGTTCCCCT < 41bp 0.515759231984442 0.719755737549821 NA NA prediction 0.407993011130758 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135003173 chr10:135003172 synonymous SNV . 0 20 hm7G_associated_SNPs_34265 0 0 0 0 2 KNDC1 chr10:135003102 3'AG 135003102 Downstream 71bp 31495 chr10 135003172 135003172 1 + C T BLCA 135003173 + 135003153 135003193 41 TCCAGCCACCCCCTGCCAACGGTGAGTGTGTGGGTTCCCCT TCCAGCCACCCCCTGCCAATGGTGAGTGTGTGGGTTCCCCT < 41bp 0.515759231984442 0.719755737549821 NA NA prediction 0.407993011130758 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135003173 chr10:135003172 synonymous SNV . 0 20 hm7G_associated_SNPs_34265 0 0 0 0 2 KNDC1 chr10:135003173 5'GT 135003173 Upstream 2bp 31496 chr15 45559899 45559899 1 + G A SKCM 45559900 + 45559880 45559920 41 TGATTTCTGCCTCTGTGATGGCCGCCCCTTGTGCTCTCGCC TGATTTCTGCCTCTGTGATAGCCGCCCCTTGTGCTCTCGCC < 41bp 0.53508856091611 0.739083808406528 NA NA prediction 0.407990494980836 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45559900 chr15:45559899 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34267 0 0 0 0 2 SLC28A2 chr15:45559864 3'AG 45559864 Downstream 36bp 31497 chr15 45559899 45559899 1 + G A SKCM 45559900 + 45559880 45559920 41 TGATTTCTGCCTCTGTGATGGCCGCCCCTTGTGCTCTCGCC TGATTTCTGCCTCTGTGATAGCCGCCCCTTGTGCTCTCGCC < 41bp 0.53508856091611 0.739083808406528 NA NA prediction 0.407990494980836 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45559900 chr15:45559899 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34267 0 0 0 0 2 SLC28A2 chr15:45559994 5'GT 45559994 Upstream 96bp 31498 chr11 89885637 89885637 1 + G A BLCA 89885638 + 89885618 89885658 41 TGGTGACCCACTCACTCCAGGCTATCCAGCAAAAGGTAAGG TGGTGACCCACTCACTCCAAGCTATCCAGCAAAAGGTAAGG < 41bp 0.516402106743228 0.720395121827438 NA NA prediction 0.407986030168421 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89885638 chr11:89885637 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34269 0 0 1 0 1 NAALAD2 chr11:89885652 5'GT 89885652 Upstream 16bp 31499 chr2 219222426 219222426 1 + G T LUSC 219222427 + 219222407 219222447 41 CCTCTAGCCGAGGCTTCTTGGACAAAATGCTCTGCGGAAAT CCTCTAGCCGAGGCTTCTTTGACAAAATGCTCTGCGGAAAT < 41bp 0.3567944117724 0.703992731149932 NA NA prediction 0.407985462299864 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219222427 chr2:219222426 nonsynonymous SNV 0.668 2 20 hm7G_associated_SNPs_34270 0 0 0 0 1 CATIP chr2:219222457 5'GT 219222457 Upstream 32bp 31500 chr16 3107038 3107038 1 + C T UCEC 3107039 + 3107019 3107059 41 CACTTTCTCCTGCAGACGGCGAGGGGACCGACCTGTTTGCC CACTTTCTCCTGCAGACGGTGAGGGGACCGACCTGTTTGCC < 41bp 0.50871496978034 0.712704464029184 NA NA prediction 0.407978988497687 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3107039 chr16:3107038 synonymous SNV . 0 20 hm7G_associated_SNPs_34273 0 0 0 0 1 MMP25 chr16:3107034 3'AG 3107034 Downstream 5bp 31501 chr11 68201119 68201119 1 + C T UCEC 68201120 + 68201100 68201140 41 CATGTGCCACAGGGGAGATCGACTGTATCCCCGGGGCCTGG CATGTGCCACAGGGGAGATTGACTGTATCCCCGGGGCCTGG < 41bp 0.529922837375902 0.733910151249846 NA NA prediction 0.407974627747888 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68201120 chr11:68201119 synonymous SNV . 0 20 hm7G_associated_SNPs_34274 0 0 1 0 1 LRP5 chr11:68201070 3'AG 68201070 Downstream 50bp 31502 chrX 100381698 100381698 1 + G T LUAD 100381699 + 100381679 100381719 41 AAAACTTATTTTATTTCAGGGAATGCAGCCTCATCTCCAGG AAAACTTATTTTATTTCAGTGAATGCAGCCTCATCTCCAGG < 41bp 0.377654342280372 0.703985898887551 NA NA prediction 0.407971797775102 Functional Gain - CENPI ENSG00000102384 CDS Human protein_coding chrX:100381699 chrX:100381698 stopgain 1.000 1 20 hm7G_associated_SNPs_34275 0 0 0 0 2 CENPI chrX:100381698 3'AG 100381698 Downstream 1bp 31503 chrX 100381698 100381698 1 + G T LUAD 100381699 + 100381679 100381719 41 AAAACTTATTTTATTTCAGGGAATGCAGCCTCATCTCCAGG AAAACTTATTTTATTTCAGTGAATGCAGCCTCATCTCCAGG < 41bp 0.377654342280372 0.703985898887551 NA NA prediction 0.407971797775102 Functional Gain - CENPI ENSG00000102384 CDS Human protein_coding chrX:100381699 chrX:100381698 stopgain 1.000 1 20 hm7G_associated_SNPs_34275 0 0 0 0 2 CENPI chrX:100381787 5'GT 100381787 Upstream 90bp 31504 chr5 147480035 147480035 1 + C T CESC 147480036 + 147480016 147480056 41 GGAGCTTTGCAGTGAATATCGAAAGCTTGTGAGGAACGGAA GGAGCTTTGCAGTGAATATTGAAAGCTTGTGAGGAACGGAA < 41bp 0.522915384168574 0.726901142409555 NA NA prediction 0.407971516481961 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147480036 chr5:147480035 stopgain 0.162 0 20 hm7G_associated_SNPs_34276 0 0 1 0 1 SPINK5 chr5:147480017 3'AG 147480017 Downstream 19bp 31505 chr1 13284 13284 1 + G A rs548333521 13285 + 13265 13305 41 CTGGACCAGTGATACACCCGGCACCCTGTCCTGGACACGCT CTGGACCAGTGATACACCCAGCACCCTGTCCTGGACACGCT < 41bp 0.531966410655186 0.735951660431472 NA NA prediction 0.407970499552572 Functional Gain - DDX11L1 ENSG00000223972 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr1:13285 chr1:13284 . . 0 20 hm7G_associated_SNPs_34277 0 0 0 0 1 DDX11L1 chr1:13221 3'AG 13221 Downstream 64bp 31506 chr20 43940867 43940867 1 + G A BRCA 43940868 + 43940848 43940888 41 GTGAGCCCCCTAGGAATTCGGCTGCGCCAAGACCCTGTACA GTGAGCCCCCTAGGAATTCAGCTGCGCCAAGACCCTGTACA < 41bp 0.578405958760905 0.782390989049012 NA NA prediction 0.407970060576214 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43940868 chr20:43940867 nonsynonymous SNV 0.902 1 20 hm7G_associated_SNPs_34278 0 0 0 0 1 RBPJL chr20:43940861 3'AG 43940861 Downstream 7bp 31507 chr5 66456371 66456371 1 + C T STAD 66456372 + 66456352 66456392 41 GAGAAACAGCTATAAGAGCCGGATGGTGAGGCGGAGCAAGA GAGAAACAGCTATAAGAGCTGGATGGTGAGGCGGAGCAAGA < 41bp 0.508425549963164 0.712410503347093 NA NA prediction 0.407969906767858 Functional Gain - MAST4 ENSG00000069020 CDS Human protein_coding chr5:66456372 chr5:66456371 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_34279 0 0 0 0 1 MAST4 chr5:66456420 5'GT 66456420 Upstream 50bp 31508 chr16 31392315 31392315 1 + C T GBM 31392316 + 31392296 31392336 41 CTGCTGGCACTCATCACAGCGGTACTGTACAAAGTGAGTGT CTGCTGGCACTCATCACAGTGGTACTGTACAAAGTGAGTGT < 41bp 0.496910787194532 0.703976449253482 NA NA prediction 0.407952898506963 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31392316 chr16:31392315 nonsynonymous SNV 0.387 1 20 hm7G_associated_SNPs_34282 0 0 0 0 2 ITGAX chr16:31392218 3'AG 31392218 Downstream 98bp 31509 chr16 31392315 31392315 1 + C T GBM 31392316 + 31392296 31392336 41 CTGCTGGCACTCATCACAGCGGTACTGTACAAAGTGAGTGT CTGCTGGCACTCATCACAGTGGTACTGTACAAAGTGAGTGT < 41bp 0.496910787194532 0.703976449253482 NA NA prediction 0.407952898506963 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31392316 chr16:31392315 nonsynonymous SNV 0.387 1 20 hm7G_associated_SNPs_34282 0 0 0 0 2 ITGAX chr16:31392328 5'GT 31392328 Upstream 14bp 31510 chr2 242813952 242813952 1 + G A PAAD 242813953 + 242813933 242813973 41 TGGGACAGGGCCAGCCACCGGGGGCTGGTGAAGATGCGCAT TGGGACAGGGCCAGCCACCAGGGGCTGGTGAAGATGCGCAT < 41bp 0.576220397638552 0.780195300718549 NA NA prediction 0.407949806159993 Functional Gain - RTP5 ENSG00000188011 CDS Human protein_coding chr2:242813953 chr2:242813952 nonsynonymous SNV 0.042 0 20 hm7G_associated_SNPs_34283 0 0 0 0 1 RTP5 chr2:242813866 3'AG 242813866 Downstream 87bp 31511 chr20 39792735 39792735 1 + G A UCEC 39792736 + 39792716 39792756 41 CCCAGTGGACTGCTGGGACGGCCCGGATGGGATGCCAGTTA CCCAGTGGACTGCTGGGACAGCCCGGATGGGATGCCAGTTA < 41bp 0.562374849077241 0.766348977486635 NA NA prediction 0.407948256818788 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39792736 chr20:39792735 nonsynonymous SNV 0.955 4 20 hm7G_associated_SNPs_34284 0 0 1 0 1 PLCG1 chr20:39792646 3'AG 39792646 Downstream 90bp 31512 chr4 151119234 151119234 1 + C T UCEC 151119235 + 151119215 151119255 41 AAGCCCTGGGCCCTCTCGACGCAGCAAATCACCAGCTTCAG AAGCCCTGGGCCCTCTCGATGCAGCAAATCACCAGCTTCAG < 41bp 0.494315699993947 0.703973408835632 NA NA prediction 0.407946817671264 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151119235 chr4:151119234 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34285 0 0 0 2 2 DCLK2 chr4:151119154 3'AG 151119154 Downstream 81bp 31513 chr4 151119234 151119234 1 + C T UCEC 151119235 + 151119215 151119255 41 AAGCCCTGGGCCCTCTCGACGCAGCAAATCACCAGCTTCAG AAGCCCTGGGCCCTCTCGATGCAGCAAATCACCAGCTTCAG < 41bp 0.494315699993947 0.703973408835632 NA NA prediction 0.407946817671264 Functional Gain - DCLK2 ENSG00000170390 CDS Human protein_coding chr4:151119235 chr4:151119234 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34285 0 0 0 2 2 DCLK2 chr4:151119255 5'GT 151119255 Upstream 22bp 31514 chr4 5806536 5806536 1 + C T COAD 5806537 + 5806517 5806557 41 GCAGCAGGACGGCAGGTGGCGCTCATGAGACCTCCCAGGCG GCAGCAGGACGGCAGGTGGTGCTCATGAGACCTCCCAGGCG < 41bp 0.508309578684819 0.712279805467089 NA NA prediction 0.40794045356454 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5806537 chr4:5806536 synonymous SNV . 0 20 hm7G_associated_SNPs_34287 0 0 1 0 2 EVC chr4:5806457 3'AG 5806457 Downstream 80bp 31515 chr4 5806536 5806536 1 + C T COAD 5806537 + 5806517 5806557 41 GCAGCAGGACGGCAGGTGGCGCTCATGAGACCTCCCAGGCG GCAGCAGGACGGCAGGTGGTGCTCATGAGACCTCCCAGGCG < 41bp 0.508309578684819 0.712279805467089 NA NA prediction 0.40794045356454 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5806537 chr4:5806536 synonymous SNV . 0 20 hm7G_associated_SNPs_34287 0 0 1 0 2 EVC chr4:5806568 5'GT 5806568 Upstream 33bp 31516 chr3 42684054 42684054 1 + C T PRAD 42684055 + 42684035 42684075 41 CAGAGGCCGAACCAGAAGCCGGAGCAGTTCCTACCGGAGTT CAGAGGCCGAACCAGAAGCTGGAGCAGTTCCTACCGGAGTT < 41bp 0.507697498427324 0.71166711849963 NA NA prediction 0.407939240144613 Functional Gain - NKTR ENSG00000114857 CDS Human protein_coding chr3:42684055 chr3:42684054 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34288 0 0 1 0 2 NKTR chr3:42683993 3'AG 42683993 Downstream 62bp 31517 chr3 42684054 42684054 1 + C T PRAD 42684055 + 42684035 42684075 41 CAGAGGCCGAACCAGAAGCCGGAGCAGTTCCTACCGGAGTT CAGAGGCCGAACCAGAAGCTGGAGCAGTTCCTACCGGAGTT < 41bp 0.507697498427324 0.71166711849963 NA NA prediction 0.407939240144613 Functional Gain - NKTR ENSG00000114857 CDS Human protein_coding chr3:42684055 chr3:42684054 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34288 0 0 1 0 2 NKTR chr3:42684088 5'GT 42684088 Upstream 35bp 31518 chr15 76484458 76484458 1 + G A rs190417970 76484459 + 76484439 76484479 41 GCACGTGGGACGAGGAGACGGCGGCCGAGAGCGTCGTGGAG GCACGTGGGACGAGGAGACAGCGGCCGAGAGCGTCGTGGAG < 41bp 0.576313286306998 0.780282300377877 NA NA prediction 0.407938028141759 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76484459 chr15:76484458 synonymous SNV . 0 20 hm7G_associated_SNPs_34289 0 0 0 0 1 TMEM266 chr15:76484498 5'GT 76484498 Upstream 41bp 31519 chr12 32481453 32481453 1 + C T SKCM 32481454 + 32481434 32481474 41 GCACCAAACGGGAGCAGATCGCCACATTGAGGGCGGTGTTG GCACCAAACGGGAGCAGATTGCCACATTGAGGGCGGTGTTG < 41bp 0.500792460747705 0.704760505651203 NA NA prediction 0.407936089806997 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32481454 chr12:32481453 synonymous SNV . 0 20 hm7G_associated_SNPs_34291 0 0 0 0 1 BICD1 chr12:32481489 5'GT 32481489 Upstream 37bp 31520 chr22 44583730 44583730 1 + C T COAD 44583731 + 44583711 44583751 41 GCCTGGAGGAGGACATGTTCGACGGGCTCATCCTACACCAC GCCTGGAGGAGGACATGTTTGACGGGCTCATCCTACACCAC < 41bp 0.534450867252823 0.738418649051416 NA NA prediction 0.407935563597187 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44583731 chr22:44583730 synonymous SNV . 0 20 hm7G_associated_SNPs_34292 0 0 0 0 2 PARVG chr22:44583656 3'AG 44583656 Downstream 75bp 31521 chr22 44583730 44583730 1 + C T COAD 44583731 + 44583711 44583751 41 GCCTGGAGGAGGACATGTTCGACGGGCTCATCCTACACCAC GCCTGGAGGAGGACATGTTTGACGGGCTCATCCTACACCAC < 41bp 0.534450867252823 0.738418649051416 NA NA prediction 0.407935563597187 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44583731 chr22:44583730 synonymous SNV . 0 20 hm7G_associated_SNPs_34292 0 0 0 0 2 PARVG chr22:44583758 5'GT 44583758 Upstream 29bp 31522 chr11 46894746 46894746 1 - G A GBM 46894745 - 46894725 46894765 41 GGGGCCACATTGCCAAGATCGAACGGGCAAACTTGGATGGT GGGGCCACATTGCCAAGATTGAACGGGCAAACTTGGATGGT < 41bp 0.535923384867513 0.739891070645466 NA NA prediction 0.407935371555906 Functional Gain - LRP4 ENSG00000134569 CDS Human protein_coding chr11:46894745 chr11:46894746 synonymous SNV . 0 20 hm7G_associated_SNPs_34293 0 0 0 0 2 LRP4 chr11:46894651 5'GT 46894651 Upstream 96bp 31523 chr11 46894746 46894746 1 - G A GBM 46894745 - 46894725 46894765 41 GGGGCCACATTGCCAAGATCGAACGGGCAAACTTGGATGGT GGGGCCACATTGCCAAGATTGAACGGGCAAACTTGGATGGT < 41bp 0.535923384867513 0.739891070645466 NA NA prediction 0.407935371555906 Functional Gain - LRP4 ENSG00000134569 CDS Human protein_coding chr11:46894745 chr11:46894746 synonymous SNV . 0 20 hm7G_associated_SNPs_34293 0 0 0 0 2 LRP4 chr11:46894785 3'AG 46894785 Downstream 40bp 31524 chr20 57876505 57876505 1 + C T UCEC 57876506 + 57876486 57876526 41 CTGGGGATGCTGGCAGGCGCGGCGTGTCCCAGGCCCCCACT CTGGGGATGCTGGCAGGCGTGGCGTGTCCCAGGCCCCCACT < 41bp 0.49220474221564 0.7039668827088 NA NA prediction 0.407933765417601 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57876506 chr20:57876505 synonymous SNV . 0 20 hm7G_associated_SNPs_34295 0 0 0 0 1 EDN3 chr20:57876465 3'AG 57876465 Downstream 41bp 31525 chr20 36560175 36560175 1 + G A SKCM 36560176 + 36560156 36560196 41 GTACGGAGCCACCGGGACTGGACCGACAAGCAGGCGTGGGC GTACGGAGCCACCGGGACTAGACCGACAAGCAGGCGTGGGC < 41bp 0.554636453677611 0.758601936500197 NA NA prediction 0.407930965645173 Functional Gain - VSTM2L ENSG00000132821 CDS Human protein_coding chr20:36560176 chr20:36560175 stopgain 1.000 1 20 hm7G_associated_SNPs_34296 0 0 0 0 1 VSTM2L chr20:36560206 5'GT 36560206 Upstream 32bp 31526 chr14 104129111 104129111 1 + C T UCEC 104129112 + 104129092 104129132 41 ATCCCCGCGCGGCTGCGGACGCTCCACAACCTGGTGATCCA ATCCCCGCGCGGCTGCGGATGCTCCACAACCTGGTGATCCA < 41bp 0.524083192557004 0.728048618839507 NA NA prediction 0.407930852565005 Functional Gain - KLC1 ENSG00000126214;ENSG00000256500 CDS Human other chr14:104129112 chr14:104129111 nonsynonymous SNV 0.540 4 20 hm7G_associated_SNPs_34297 0 0 1 0 1 KLC1 chr14:104129039 3'AG 104129039 Downstream 73bp 31527 chr21 45504101 45504101 1 + C T UCEC 45504102 + 45504082 45504122 41 ACCCCATTGTGCAGTACGACGTGTACTCACAGGAGCCCCAG ACCCCATTGTGCAGTACGATGTGTACTCACAGGAGCCCCAG < 41bp 0.515883428951925 0.71984459411577 NA NA prediction 0.407922330327689 Functional Gain - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45504102 chr21:45504101 synonymous SNV . 0 20 hm7G_associated_SNPs_34298 0 0 1 0 2 TRAPPC10 chr21:45504003 3'AG 45504003 Downstream 99bp 31528 chr21 45504101 45504101 1 + C T UCEC 45504102 + 45504082 45504122 41 ACCCCATTGTGCAGTACGACGTGTACTCACAGGAGCCCCAG ACCCCATTGTGCAGTACGATGTGTACTCACAGGAGCCCCAG < 41bp 0.515883428951925 0.71984459411577 NA NA prediction 0.407922330327689 Functional Gain - TRAPPC10 ENSG00000160218 CDS Human protein_coding chr21:45504102 chr21:45504101 synonymous SNV . 0 20 hm7G_associated_SNPs_34298 0 0 1 0 2 TRAPPC10 chr21:45504144 5'GT 45504144 Upstream 44bp 31529 chr19 50955149 50955149 1 + G A rs368206950 50955150 + 50955130 50955170 41 AGATCCACTTGGATTGCTCGGGGAAGACCTCAGAGAATGCG AGATCCACTTGGATTGCTCAGGGAAGACCTCAGAGAATGCG < 41bp 0.538598314921137 0.74255880566715 NA NA prediction 0.407920981492026 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50955150 chr19:50955149 synonymous SNV . 0 20 hm7G_associated_SNPs_34299 0 0 0 0 1 MYBPC2 chr19:50955121 3'AG 50955121 Downstream 29bp 31530 chr16 1392586 1392586 1 + C T CESC 1392587 + 1392567 1392607 41 GAGCCACGCTCCAGTGCCTCGCGTGTGCAGGGACACTGCCA GAGCCACGCTCCAGTGCCTTGCGTGTGCAGGGACACTGCCA < 41bp 0.521134981262413 0.725093775910594 NA NA prediction 0.407917589296363 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392587 chr16:1392586 nonsynonymous SNV 0.761 4 20 hm7G_associated_SNPs_34301 0 0 0 0 2 BAIAP3 chr16:1392528 3'AG 1392528 Downstream 59bp 31531 chr16 1392586 1392586 1 + C T CESC 1392587 + 1392567 1392607 41 GAGCCACGCTCCAGTGCCTCGCGTGTGCAGGGACACTGCCA GAGCCACGCTCCAGTGCCTTGCGTGTGCAGGGACACTGCCA < 41bp 0.521134981262413 0.725093775910594 NA NA prediction 0.407917589296363 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1392587 chr16:1392586 nonsynonymous SNV 0.761 4 20 hm7G_associated_SNPs_34301 0 0 0 0 2 BAIAP3 chr16:1392635 5'GT 1392635 Upstream 50bp 31532 chr17 79671373 79671373 1 + G T LUSC 79671374 + 79671354 79671394 41 CCCTGGATAACGCCCCCAAGGAGTACCCCCCCAAGATACAG CCCTGGATAACGCCCCCAATGAGTACCCCCCCAAGATACAG < 41bp 0.340827897061962 0.703958501227951 NA NA prediction 0.407917002455902 Functional Gain - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671374 chr17:79671373 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_34302 0 0 1 0 2 MRPL12 chr17:79671274 3'AG 79671274 Downstream 100bp 31533 chr17 79671373 79671373 1 + G T LUSC 79671374 + 79671354 79671394 41 CCCTGGATAACGCCCCCAAGGAGTACCCCCCCAAGATACAG CCCTGGATAACGCCCCCAATGAGTACCCCCCCAAGATACAG < 41bp 0.340827897061962 0.703958501227951 NA NA prediction 0.407917002455902 Functional Gain - MRPL12 ENSG00000183048;ENSG00000262660;ENSG00000262814 CDS Human other chr17:79671374 chr17:79671373 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_34302 0 0 1 0 2 MRPL12 chr17:79671460 5'GT 79671460 Upstream 88bp 31534 chr9 117051202 117051202 1 + G A rs1687409 117051203 + 117051183 117051223 41 TTGGCTTCCAGGGACAGGAGGGTGTGCAAGGCCTCCGTGGA TTGGCTTCCAGGGACAGGAAGGTGTGCAAGGCCTCCGTGGA < 41bp 0.5338610141526 0.737818214590438 NA NA prediction 0.407914400875676 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117051203 chr9:117051202 synonymous SNV . 0 20 hm7G_associated_SNPs_34303 0 0 1 0 2 COL27A1 chr9:117051194 3'AG 117051194 Downstream 9bp 31535 chr9 117051202 117051202 1 + G A rs1687409 117051203 + 117051183 117051223 41 TTGGCTTCCAGGGACAGGAGGGTGTGCAAGGCCTCCGTGGA TTGGCTTCCAGGGACAGGAAGGTGTGCAAGGCCTCCGTGGA < 41bp 0.5338610141526 0.737818214590438 NA NA prediction 0.407914400875676 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117051203 chr9:117051202 synonymous SNV . 0 20 hm7G_associated_SNPs_34303 0 0 1 0 2 COL27A1 chr9:117051247 5'GT 117051247 Upstream 46bp 31536 chr16 87717769 87717769 1 + G T UCEC 87717770 + 87717750 87717790 41 CCTCCCACTCTCGGGCAAAGGCCGAGGCAGCCCTCACAGCA CCTCCCACTCTCGGGCAAATGCCGAGGCAGCCCTCACAGCA < 41bp 0.347987150617965 0.703955053004891 NA NA prediction 0.407910106009783 Functional Gain - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87717770 chr16:87717769 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34305 0 0 0 0 1 JPH3 chr16:87717748 3'AG 87717748 Downstream 22bp 31537 chr6 26091203 26091203 1 + C T UCS 26091204 + 26091184 26091224 41 GAGTCGCCGTGTGGAGCCCCGAACTCCATGGGTTTCCAGTA GAGTCGCCGTGTGGAGCCCTGAACTCCATGGGTTTCCAGTA < 41bp 0.503453937825527 0.70740859966249 NA NA prediction 0.407909323673926 Functional Gain - HFE ENSG00000010704 CDS Human protein_coding chr6:26091204 chr6:26091203 stopgain 0.024 0 20 hm7G_associated_SNPs_34306 0 0 0 0 1 HFE chr6:26091138 3'AG 26091138 Downstream 66bp 31538 chrX 10104690 10104690 1 + C T UCEC 10104691 + 10104671 10104711 41 AGCTTTATCGTAGTGACAGCGACAGTTCAACGCTGCCCCGG AGCTTTATCGTAGTGACAGTGACAGTTCAACGCTGCCCCGG < 41bp 0.516122467596154 0.720076619780565 NA NA prediction 0.407908304368822 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10104691 chrX:10104690 synonymous SNV . 0 20 hm7G_associated_SNPs_34307 0 0 1 0 2 WWC3 chrX:10104673 3'AG 10104673 Downstream 18bp 31539 chrX 10104690 10104690 1 + C T UCEC 10104691 + 10104671 10104711 41 AGCTTTATCGTAGTGACAGCGACAGTTCAACGCTGCCCCGG AGCTTTATCGTAGTGACAGTGACAGTTCAACGCTGCCCCGG < 41bp 0.516122467596154 0.720076619780565 NA NA prediction 0.407908304368822 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10104691 chrX:10104690 synonymous SNV . 0 20 hm7G_associated_SNPs_34307 0 0 1 0 2 WWC3 chrX:10104765 5'GT 10104765 Upstream 76bp 31540 chr4 657999 657999 1 + G A SKCM 658000 + 657980 658020 41 CCCTGGAGACGACCCGGAAGGAGATCGTCATGTGAGCGCGG CCCTGGAGACGACCCGGAAAGAGATCGTCATGTGAGCGCGG < 41bp 0.491228635864912 0.703953978962676 NA NA prediction 0.407907957925351 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:658000 chr4:657999 synonymous SNV . 0 20 hm7G_associated_SNPs_34308 0 0 0 0 2 PDE6B chr4:657903 3'AG 657903 Downstream 97bp 31541 chr4 657999 657999 1 + G A SKCM 658000 + 657980 658020 41 CCCTGGAGACGACCCGGAAGGAGATCGTCATGTGAGCGCGG CCCTGGAGACGACCCGGAAAGAGATCGTCATGTGAGCGCGG < 41bp 0.491228635864912 0.703953978962676 NA NA prediction 0.407907957925351 Functional Gain - PDE6B ENSG00000133256 CDS Human protein_coding chr4:658000 chr4:657999 synonymous SNV . 0 20 hm7G_associated_SNPs_34308 0 0 0 0 2 PDE6B chr4:658010 5'GT 658010 Upstream 12bp 31542 chr21 43702422 43702422 1 + C T UCEC 43702423 + 43702403 43702443 41 CGCTGGGCTTGCTGTCTTGCGCCAACACGCGGACCGGGAGC CGCTGGGCTTGCTGTCTTGTGCCAACACGCGGACCGGGAGC < 41bp 0.533898135339112 0.737850244795992 NA NA prediction 0.407904218913759 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43702423 chr21:43702422 synonymous SNV . 0 20 hm7G_associated_SNPs_34309 0 0 0 0 1 ABCG1 chr21:43702384 3'AG 43702384 Downstream 39bp 31543 chr3 47378053 47378053 1 + C T READ 47378054 + 47378034 47378074 41 TGAATGTGGTGGAAGTGTTCGACCCCATTGCCAATTGCTGG TGAATGTGGTGGAAGTGTTTGACCCCATTGCCAATTGCTGG < 41bp 0.537163021225663 0.741113118328908 NA NA prediction 0.407900194206489 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47378054 chr3:47378053 synonymous SNV . 0 20 hm7G_associated_SNPs_34311 0 0 1 0 2 KLHL18 chr3:47378010 3'AG 47378010 Downstream 44bp 31544 chr3 47378053 47378053 1 + C T READ 47378054 + 47378034 47378074 41 TGAATGTGGTGGAAGTGTTCGACCCCATTGCCAATTGCTGG TGAATGTGGTGGAAGTGTTTGACCCCATTGCCAATTGCTGG < 41bp 0.537163021225663 0.741113118328908 NA NA prediction 0.407900194206489 Functional Gain - KLHL18 ENSG00000114648 CDS Human protein_coding chr3:47378054 chr3:47378053 synonymous SNV . 0 20 hm7G_associated_SNPs_34311 0 0 1 0 2 KLHL18 chr3:47378025 3'AG 47378025 Downstream 29bp 31545 chr1 162336938 162336938 1 + C T SKCM 162336939 + 162336919 162336959 41 AAGCCAGAGGACCTGCATTCGCCGCCGCTGGGCGCGGGCTT AAGCCAGAGGACCTGCATTTGCCGCCGCTGGGCGCGGGCTT < 41bp 0.492275136280818 0.703943689037392 NA NA prediction 0.407887378074784 Functional Gain - NOS1AP ENSG00000198929;ENSG00000254706 CDS Human other chr1:162336939 chr1:162336938 nonsynonymous SNV 0.956 0 20 hm7G_associated_SNPs_34314 0 0 1 0 1 NOS1AP chr1:162336842 3'AG 162336842 Downstream 97bp 31546 chr11 9519279 9519279 1 + C T SKCM 9519280 + 9519260 9519300 41 GAAAAGCCATATCGGTGTTCGGAAGATAATTGTACTAAATC GAAAAGCCATATCGGTGTTTGGAAGATAATTGTACTAAATC < 41bp 0.518271823761936 0.722213901456998 NA NA prediction 0.407884155390122 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9519280 chr11:9519279 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_34315 0 0 1 0 2 ZNF143 chr11:9519222 3'AG 9519222 Downstream 58bp 31547 chr11 9519279 9519279 1 + C T SKCM 9519280 + 9519260 9519300 41 GAAAAGCCATATCGGTGTTCGGAAGATAATTGTACTAAATC GAAAAGCCATATCGGTGTTTGGAAGATAATTGTACTAAATC < 41bp 0.518271823761936 0.722213901456998 NA NA prediction 0.407884155390122 Functional Gain - ZNF143 ENSG00000166478 CDS Human protein_coding chr11:9519280 chr11:9519279 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_34315 0 0 1 0 2 ZNF143 chr11:9519347 5'GT 9519347 Upstream 69bp 31548 chr1 65851582 65851582 1 + C T UCEC 65851583 + 65851563 65851603 41 GACTTGCACAGATTTTGAACGAATGAAGTAAGTCATGATAC GACTTGCACAGATTTTGAATGAATGAAGTAAGTCATGATAC < 41bp 0.50025842339637 0.704198976301764 NA NA prediction 0.407881105810787 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65851583 chr1:65851582 stopgain 0.999 1 20 hm7G_associated_SNPs_34318 0 0 0 0 1 DNAJC6 chr1:65851589 5'GT 65851589 Upstream 8bp 31549 chr16 81293383 81293383 1 + C T UCEC 81293384 + 81293364 81293404 41 TTTGGAACAATGGCCTATCCGGACCCCTGCAAAAACATATT TTTGGAACAATGGCCTATCTGGACCCCTGCAAAAACATATT < 41bp 0.508728994060734 0.712668049569115 NA NA prediction 0.407878111016763 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81293384 chr16:81293383 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_34319 0 0 0 0 1 BCO1 chr16:81293410 5'GT 81293410 Upstream 28bp 31550 chr13 115007622 115007622 1 + C T OV 115007623 + 115007603 115007643 41 GTTCTATCTGTCTTCTACGCGGGAAAATCTATGATGCTCTA GTTCTATCTGTCTTCTACGTGGGAAAATCTATGATGCTCTA < 41bp 0.537559131569731 0.741497215638106 NA NA prediction 0.407876168136749 Functional Gain - CDC16 ENSG00000130177 CDS Human protein_coding chr13:115007623 chr13:115007622 synonymous SNV . 0 20 hm7G_associated_SNPs_34320 0 0 1 0 1 CDC16 chr13:115007596 3'AG 115007596 Downstream 27bp 31551 chr17 15644498 15644498 1 + G T UCEC 15644499 + 15644479 15644519 41 TCCTCCTGTGTCTGCCAGAGGAAGATGCTTTCTGGGCGCTT TCCTCCTGTGTCTGCCAGATGAAGATGCTTTCTGGGCGCTT < 41bp 0.706704762550545 0.910641427526472 NA NA prediction 0.407873329951855 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644499 chr17:15644498 nonsynonymous SNV 0.031 2 20 hm7G_associated_SNPs_34321 0 0 0 0 2 TBC1D26 chr17:15644436 3'AG 15644436 Downstream 63bp 31552 chr17 15644498 15644498 1 + G T UCEC 15644499 + 15644479 15644519 41 TCCTCCTGTGTCTGCCAGAGGAAGATGCTTTCTGGGCGCTT TCCTCCTGTGTCTGCCAGATGAAGATGCTTTCTGGGCGCTT < 41bp 0.706704762550545 0.910641427526472 NA NA prediction 0.407873329951855 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644499 chr17:15644498 nonsynonymous SNV 0.031 2 20 hm7G_associated_SNPs_34321 0 0 0 0 2 TBC1D26 chr17:15644555 5'GT 15644555 Upstream 58bp 31553 chr21 43852275 43852275 1 + G A GBM 43852276 + 43852256 43852296 41 GAGAGTGGATCAGATCTTCGGGAAGGCATGGCTGCAGCAAT GAGAGTGGATCAGATCTTCAGGAAGGCATGGCTGCAGCAAT < 41bp 0.541510484567305 0.745446284566052 NA NA prediction 0.407871599997494 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43852276 chr21:43852275 nonsynonymous SNV 0.814 4 20 hm7G_associated_SNPs_34322 0 0 0 0 2 UBASH3A chr21:43852212 3'AG 43852212 Downstream 64bp 31554 chr21 43852275 43852275 1 + G A GBM 43852276 + 43852256 43852296 41 GAGAGTGGATCAGATCTTCGGGAAGGCATGGCTGCAGCAAT GAGAGTGGATCAGATCTTCAGGAAGGCATGGCTGCAGCAAT < 41bp 0.541510484567305 0.745446284566052 NA NA prediction 0.407871599997494 Functional Gain - UBASH3A ENSG00000160185 CDS Human protein_coding chr21:43852276 chr21:43852275 nonsynonymous SNV 0.814 4 20 hm7G_associated_SNPs_34322 0 0 0 0 2 UBASH3A chr21:43852311 5'GT 43852311 Upstream 37bp 31555 chr12 1609893 1609893 1 + G A rs538820663 1609894 + 1609874 1609914 41 CCCATGGTTGCGTTCGGTCGGCCTTGGCCGGCTGGCTCCTG CCCATGGTTGCGTTCGGTCAGCCTTGGCCGGCTGGCTCCTG < 41bp 0.498404036924179 0.703935107313537 NA NA prediction 0.407870214627074 Functional Gain - LINC00942 ENSG00000249628 ncRNA_exonic Human lincRNA chr12:1609894 chr12:1609893 . . 0 20 hm7G_associated_SNPs_34324 0 0 0 0 1 LINC00942 chr12:1609942 5'GT 1609942 Upstream 50bp 31556 chr1 26138011 26138011 1 + C T SKCM 26138012 + 26137992 26138032 41 GCAACATGGAGGTGGACATCGGCTACATACCCCAGGTGAGC GCAACATGGAGGTGGACATTGGCTACATACCCCAGGTGAGC < 41bp 0.525388901437106 0.729321943932486 NA NA prediction 0.40786608499076 Functional Gain - SELENON ENSG00000162430 CDS Human protein_coding chr1:26138012 chr1:26138011 synonymous SNV . 0 20 hm7G_associated_SNPs_34326 0 0 1 0 2 SELENON chr1:26137945 3'AG 26137945 Downstream 67bp 31557 chr1 26138011 26138011 1 + C T SKCM 26138012 + 26137992 26138032 41 GCAACATGGAGGTGGACATCGGCTACATACCCCAGGTGAGC GCAACATGGAGGTGGACATTGGCTACATACCCCAGGTGAGC < 41bp 0.525388901437106 0.729321943932486 NA NA prediction 0.40786608499076 Functional Gain - SELENON ENSG00000162430 CDS Human protein_coding chr1:26138012 chr1:26138011 synonymous SNV . 0 20 hm7G_associated_SNPs_34326 0 0 1 0 2 SELENON chr1:26138026 5'GT 26138026 Upstream 16bp 31558 chr8 145662277 145662277 1 - C T STAD 145662276 - 145662256 145662296 41 CCGCTTCCTGCTGGACCACGGGGCCGCAGTGGACGACCCAG CCGCTTCCTGCTGGACCACAGGGCCGCAGTGGACGACCCAG < 41bp 0.591588412618524 0.795520637467052 NA NA prediction 0.407864449697054 Functional Gain - TONSL ENSG00000160949 CDS Human protein_coding chr8:145662276 chr8:145662277 nonsynonymous SNV 0.492 4 20 hm7G_associated_SNPs_34327 0 0 1 0 1 TONSL chr8:145662303 3'AG 145662303 Downstream 27bp 31559 chr16 88643735 88643735 1 + C T STAD 88643736 + 88643716 88643756 41 AGGAAGATAATCACTCCGACGAGGAGGACCGGGCAAGTGAG AGGAAGATAATCACTCCGATGAGGAGGACCGGGCAAGTGAG < 41bp 0.530474756205664 0.734406074945099 NA NA prediction 0.407862637478871 Functional Gain - ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88643736 chr16:88643735 synonymous SNV . 0 20 hm7G_associated_SNPs_34328 0 0 1 0 1 ZC3H18 chr16:88643783 5'GT 88643783 Upstream 49bp 31560 chrX 54951478 54951478 1 + C T UCEC 54951479 + 54951459 54951499 41 TTTCCCAGAAATCATTGAACGAGCAAGCTACACTCTGGAGA TTTCCCAGAAATCATTGAATGAGCAAGCTACACTCTGGAGA < 41bp 0.525478982700355 0.729409853331635 NA NA prediction 0.40786174126256 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54951479 chrX:54951478 stopgain 0.993 0 20 hm7G_associated_SNPs_34329 0 0 0 2 2 TRO chrX:54951422 3'AG 54951422 Downstream 57bp 31561 chrX 54951478 54951478 1 + C T UCEC 54951479 + 54951459 54951499 41 TTTCCCAGAAATCATTGAACGAGCAAGCTACACTCTGGAGA TTTCCCAGAAATCATTGAATGAGCAAGCTACACTCTGGAGA < 41bp 0.525478982700355 0.729409853331635 NA NA prediction 0.40786174126256 Functional Gain - TRO ENSG00000067445 CDS Human protein_coding chrX:54951479 chrX:54951478 stopgain 0.993 0 20 hm7G_associated_SNPs_34329 0 0 0 2 2 TRO chrX:54951501 5'GT 54951501 Upstream 24bp 31562 chr19 45911401 45911401 1 + C T UCEC 45911402 + 45911382 45911422 41 TCTCTGTAGCTTCAATGGGCGGCATGTGCCTCTCTCTGGCT TCTCTGTAGCTTCAATGGGTGGCATGTGCCTCTCTCTGGCT < 41bp 0.513831578017702 0.717761010096743 NA NA prediction 0.407858864158082 Functional Gain - CD3EAP ENSG00000117877 CDS Human protein_coding chr19:45911402 chr19:45911401 nonsynonymous SNV 0.812 3 20 hm7G_associated_SNPs_34330 0 0 1 0 1 CD3EAP chr19:45911391 3'AG 45911391 Downstream 11bp 31563 chr13 111371604 111371604 1 + C T rs34192103 111371605 + 111371585 111371625 41 AGGAGCTAGACGAGTGCTACGAGCGCTTCAGTCGCGAGACA AGGAGCTAGACGAGTGCTATGAGCGCTTCAGTCGCGAGACA < 41bp 0.49520931491048 0.703929304070495 NA NA prediction 0.407858608140989 Functional Gain - ING1 ENSG00000153487 CDS Human protein_coding chr13:111371605 chr13:111371604 synonymous SNV . 0 20 hm7G_associated_SNPs_34331 0 0 1 0 1 ING1 chr13:111371576 3'AG 111371576 Downstream 29bp 31564 chr19 8430863 8430863 1 + G A SARC 8430864 + 8430844 8430884 41 CTCAAGGCTCAGAACAGCAGGATCCAGCAACTCTTCCACAA CTCAAGGCTCAGAACAGCAAGATCCAGCAACTCTTCCACAA < 41bp 0.565856457639881 0.76978445716018 NA NA prediction 0.407855999040598 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8430864 chr19:8430863 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_34333 0 0 0 0 2 ANGPTL4 chr19:8430838 3'AG 8430838 Downstream 26bp 31565 chr19 8430863 8430863 1 + G A SARC 8430864 + 8430844 8430884 41 CTCAAGGCTCAGAACAGCAGGATCCAGCAACTCTTCCACAA CTCAAGGCTCAGAACAGCAAGATCCAGCAACTCTTCCACAA < 41bp 0.565856457639881 0.76978445716018 NA NA prediction 0.407855999040598 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8430864 chr19:8430863 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_34333 0 0 0 0 2 ANGPTL4 chr19:8430948 5'GT 8430948 Upstream 86bp 31566 chr16 56924263 56924263 1 + C T COAD 56924264 + 56924244 56924284 41 GTGTCCAAGATGATGCAGGCGCACAGTGAGTACATGCCCCA GTGTCCAAGATGATGCAGGTGCACAGTGAGTACATGCCCCA < 41bp 0.537174076242182 0.741099629082265 NA NA prediction 0.407851105680167 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56924264 chr16:56924263 nonsynonymous SNV 0.559 1 20 hm7G_associated_SNPs_34336 0 0 0 0 2 SLC12A3 chr16:56924186 3'AG 56924186 Downstream 78bp 31567 chr16 56924263 56924263 1 + C T COAD 56924264 + 56924244 56924284 41 GTGTCCAAGATGATGCAGGCGCACAGTGAGTACATGCCCCA GTGTCCAAGATGATGCAGGTGCACAGTGAGTACATGCCCCA < 41bp 0.537174076242182 0.741099629082265 NA NA prediction 0.407851105680167 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56924264 chr16:56924263 nonsynonymous SNV 0.559 1 20 hm7G_associated_SNPs_34336 0 0 0 0 2 SLC12A3 chr16:56924268 5'GT 56924268 Upstream 6bp 31568 chr7 66648180 66648180 1 + C T UCEC 66648181 + 66648161 66648201 41 GACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGGAA GACGAGCTCCAGGCCTACGTGCAGCTCGTGTCCCTGGGGAA < 41bp 0.540100896427619 0.744026140017565 NA NA prediction 0.407850487179893 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66648181 chr7:66648180 nonsynonymous SNV 0.797 2 20 hm7G_associated_SNPs_34337 0 0 0 0 2 TYW1 chr7:66648113 3'AG 66648113 Downstream 68bp 31569 chr7 66648180 66648180 1 + C T UCEC 66648181 + 66648161 66648201 41 GACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGGAA GACGAGCTCCAGGCCTACGTGCAGCTCGTGTCCCTGGGGAA < 41bp 0.540100896427619 0.744026140017565 NA NA prediction 0.407850487179893 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66648181 chr7:66648180 nonsynonymous SNV 0.797 2 20 hm7G_associated_SNPs_34337 0 0 0 0 2 TYW1 chr7:66648223 5'GT 66648223 Upstream 44bp 31570 chr20 37623476 37623476 1 + C T UCEC 37623477 + 37623457 37623497 41 TTTTTAGATTCAGAAAAAGCGAGGGGATCTTCGATTGATTG TTTTTAGATTCAGAAAAAGTGAGGGGATCTTCGATTGATTG < 41bp 0.505685708128831 0.70960838937691 NA NA prediction 0.407845362496157 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37623477 chr20:37623476 stopgain 0.997 1 20 hm7G_associated_SNPs_34338 0 0 1 0 2 DHX35 chr20:37623464 3'AG 37623464 Downstream 13bp 31571 chr20 37623476 37623476 1 + C T UCEC 37623477 + 37623457 37623497 41 TTTTTAGATTCAGAAAAAGCGAGGGGATCTTCGATTGATTG TTTTTAGATTCAGAAAAAGTGAGGGGATCTTCGATTGATTG < 41bp 0.505685708128831 0.70960838937691 NA NA prediction 0.407845362496157 Functional Gain - DHX35 ENSG00000101452 CDS Human protein_coding chr20:37623477 chr20:37623476 stopgain 0.997 1 20 hm7G_associated_SNPs_34338 0 0 1 0 2 DHX35 chr20:37623523 5'GT 37623523 Upstream 48bp 31572 chr4 160277248 160277248 1 + C T LUSC 160277249 + 160277229 160277269 41 AAACCTCAGTGGCATAAACCGAACGAGTCTGACCCGCGCCT AAACCTCAGTGGCATAAACTGAACGAGTCTGACCCGCGCCT < 41bp 0.528320810184282 0.732242383040529 NA NA prediction 0.407843145712493 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160277249 chr4:160277248 nonsynonymous SNV 0.028 0 20 hm7G_associated_SNPs_34339 0 0 1 0 1 RAPGEF2 chr4:160277310 5'GT 160277310 Upstream 63bp 31573 chr10 104160036 104160036 1 + C T CESC 104160037 + 104160017 104160057 41 CCCTGCTTTCATCCCCAGACGCCCCTGCACCTGGCGGTGAT CCCTGCTTTCATCCCCAGATGCCCCTGCACCTGGCGGTGAT < 41bp 0.534160010742713 0.738079305052679 NA NA prediction 0.407838588619931 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104160037 chr10:104160036 nonsynonymous SNV 0.212 4 20 hm7G_associated_SNPs_34340 0 0 1 0 1 NFKB2 chr10:104160035 3'AG 104160035 Downstream 2bp 31574 chr16 8722951 8722951 1 + C T SKCM 8722952 + 8722932 8722972 41 AAGCACAAGGCAGCCCGCACGATATCATCAGAATAGGTAAA AAGCACAAGGCAGCCCGCATGATATCATCAGAATAGGTAAA < 41bp 0.519477993434213 0.723396237261088 NA NA prediction 0.407836487653751 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8722952 chr16:8722951 synonymous SNV . 0 20 hm7G_associated_SNPs_34341 0 0 1 0 1 METTL22 chr16:8722967 5'GT 8722967 Upstream 17bp 31575 chr3 52818359 52818359 1 + C T UCEC 52818360 + 52818340 52818380 41 GAACGTCCGCAACGCCATCCGGGGCAGGTTCCCGCTCTACA GAACGTCCGCAACGCCATCTGGGGCAGGTTCCCGCTCTACA < 41bp 0.487569008748937 0.703918208910064 NA NA prediction 0.407836417820129 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52818360 chr3:52818359 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_34342 0 0 0 0 1 ITIH1 chr3:52818312 3'AG 52818312 Downstream 48bp 31576 chr11 13733566 13733566 1 + C T COAD 13733567 + 13733547 13733587 41 GTTGTCAACATGAGTCTTGCGGCAGCCTGGTATTCCGGAGT GTTGTCAACATGAGTCTTGTGGCAGCCTGGTATTCCGGAGT < 41bp 0.494965299263576 0.703917611099541 NA NA prediction 0.407835222199081 Functional Gain - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13733567 chr11:13733566 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_34343 0 0 1 0 2 FAR1 chr11:13733475 3'AG 13733475 Downstream 92bp 31577 chr11 13733566 13733566 1 + C T COAD 13733567 + 13733547 13733587 41 GTTGTCAACATGAGTCTTGCGGCAGCCTGGTATTCCGGAGT GTTGTCAACATGAGTCTTGTGGCAGCCTGGTATTCCGGAGT < 41bp 0.494965299263576 0.703917611099541 NA NA prediction 0.407835222199081 Functional Gain - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13733567 chr11:13733566 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_34343 0 0 1 0 2 FAR1 chr11:13733593 5'GT 13733593 Upstream 28bp 31578 chr11 65384403 65384403 1 + G A UCEC 65384404 + 65384384 65384424 41 TCATGCCATGTTTGACCAGGGCGAGATCGTGGAGAAGCGCA TCATGCCATGTTTGACCAGAGCGAGATCGTGGAGAAGCGCA < 41bp 0.488859994112911 0.703916670434418 NA NA prediction 0.407833340868836 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65384404 chr11:65384403 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34344 0 0 1 0 1 PCNX3 chr11:65384482 5'GT 65384482 Upstream 80bp 31579 chr4 108829724 108829724 1 + C T UCEC 108829725 + 108829705 108829745 41 TTTTTCTACTGTCCAGATTCGCCTCGTCACTTCTGGTGGTA TTTTTCTACTGTCCAGATTTGCCTCGTCACTTCTGGTGGTA < 41bp 0.515678359132124 0.719592579477696 NA NA prediction 0.407828440691143 Functional Gain - SGMS2 ENSG00000164023 CDS Human protein_coding chr4:108829725 chr4:108829724 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_34346 0 0 0 0 1 SGMS2 chr4:108829721 3'AG 108829721 Downstream 4bp 31580 chr10 72462145 72462145 1 + C T LUSC 72462146 + 72462126 72462166 41 AGCAGGAGAAGGAGGCCAGCGGGAGGACACATGTGGTGTAC AGCAGGAGAAGGAGGCCAGTGGGAGGACACATGTGGTGTAC < 41bp 0.488390916346953 0.703911535274189 NA NA prediction 0.407823070548377 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72462146 chr10:72462145 synonymous SNV . 0 20 hm7G_associated_SNPs_34348 0 0 1 0 2 ADAMTS14 chr10:72462068 3'AG 72462068 Downstream 78bp 31581 chr10 72462145 72462145 1 + C T LUSC 72462146 + 72462126 72462166 41 AGCAGGAGAAGGAGGCCAGCGGGAGGACACATGTGGTGTAC AGCAGGAGAAGGAGGCCAGTGGGAGGACACATGTGGTGTAC < 41bp 0.488390916346953 0.703911535274189 NA NA prediction 0.407823070548377 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72462146 chr10:72462145 synonymous SNV . 0 20 hm7G_associated_SNPs_34348 0 0 1 0 2 ADAMTS14 chr10:72462224 5'GT 72462224 Upstream 80bp 31582 chr17 6900228 6900228 1 + C T COAD 6900229 + 6900209 6900249 41 AGCACCACTGGCTGGTGGACGACGCGTGGTTCTGCGACCGC AGCACCACTGGCTGGTGGATGACGCGTGGTTCTGCGACCGC < 41bp 0.507858093945749 0.711769610495447 NA NA prediction 0.407823033099396 Functional Gain - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6900229 chr17:6900228 synonymous SNV . 0 20 hm7G_associated_SNPs_34350 0 0 0 0 1 ALOX12 chr17:6900145 3'AG 6900145 Downstream 84bp 31583 chr1 55273638 55273638 1 + G A LUAD 55273639 + 55273619 55273659 41 GAGAAACCATGTAGCACCCGGGGGCTGCTCAGCTCTGGGGA GAGAAACCATGTAGCACCCAGGGGCTGCTCAGCTCTGGGGA < 41bp 0.580956001277502 0.784866545646277 NA NA prediction 0.407821088737549 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55273639 chr1:55273638 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_34351 0 0 0 0 2 LEXM chr1:55273562 3'AG 55273562 Downstream 77bp 31584 chr1 55273638 55273638 1 + G A LUAD 55273639 + 55273619 55273659 41 GAGAAACCATGTAGCACCCGGGGGCTGCTCAGCTCTGGGGA GAGAAACCATGTAGCACCCAGGGGCTGCTCAGCTCTGGGGA < 41bp 0.580956001277502 0.784866545646277 NA NA prediction 0.407821088737549 Functional Gain - LEXM ENSG00000162398 CDS Human protein_coding chr1:55273639 chr1:55273638 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_34351 0 0 0 0 2 LEXM chr1:55273684 5'GT 55273684 Upstream 47bp 31585 chr14 45636243 45636243 1 + C T UCEC 45636244 + 45636224 45636264 41 TTTTTACCAAAGAAGTCCACGAATGGTTCCTGATGGAATCA TTTTTACCAAAGAAGTCCATGAATGGTTCCTGATGGAATCA < 41bp 0.541106281888345 0.74501640791117 NA NA prediction 0.40782025204565 Functional Gain - FANCM ENSG00000187790 CDS Human protein_coding chr14:45636244 chr14:45636243 stopgain 1.000 1 20 hm7G_associated_SNPs_34352 0 0 0 0 1 FANCM chr14:45636153 3'AG 45636153 Downstream 91bp 31586 chr3 179096197 179096197 1 + C T LUSC 179096198 + 179096178 179096218 41 GATGCACCGATGAAGTAAACGCCTTAGTGCTTCAGACCCAG GATGCACCGATGAAGTAAATGCCTTAGTGCTTCAGACCCAG < 41bp 0.512478233515537 0.716387492589767 NA NA prediction 0.407818518148459 Functional Gain - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179096198 chr3:179096197 synonymous SNV . 0 20 hm7G_associated_SNPs_34353 0 0 1 0 2 MFN1 chr3:179096129 3'AG 179096129 Downstream 69bp 31587 chr3 179096197 179096197 1 + C T LUSC 179096198 + 179096178 179096218 41 GATGCACCGATGAAGTAAACGCCTTAGTGCTTCAGACCCAG GATGCACCGATGAAGTAAATGCCTTAGTGCTTCAGACCCAG < 41bp 0.512478233515537 0.716387492589767 NA NA prediction 0.407818518148459 Functional Gain - MFN1 ENSG00000171109 CDS Human protein_coding chr3:179096198 chr3:179096197 synonymous SNV . 0 20 hm7G_associated_SNPs_34353 0 0 1 0 2 MFN1 chr3:179096231 5'GT 179096231 Upstream 35bp 31588 chr2 69040538 69040538 1 + C T UCEC 69040539 + 69040519 69040559 41 TGTGGGCAGCTCACGAATGCGGATGAGGCAAAGGTTTGCAT TGTGGGCAGCTCACGAATGTGGATGAGGCAAAGGTTTGCAT < 41bp 0.550155447671082 0.754063716499958 NA NA prediction 0.407816537657752 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040539 chr2:69040538 nonsynonymous SNV 0.483 0 20 hm7G_associated_SNPs_34354 0 0 1 0 1 ARHGAP25 chr2:69040551 5'GT 69040551 Upstream 14bp 31589 chrX 1746635 1746635 1 + C T GBM 1746636 + 1746616 1746656 41 TGGAGACGTTTGGCGTTCCCGCTGAAGAGCTTTTTACGGCC TGGAGACGTTTGGCGTTCCTGCTGAAGAGCTTTTTACGGCC < 41bp 0.534092231661946 0.738000443411562 NA NA prediction 0.407816423499232 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1746636 chrX:1746635 synonymous SNV . 0 20 hm7G_associated_SNPs_34355 0 0 0 0 2 ASMT chrX:1746596 3'AG 1746596 Downstream 40bp 31590 chrX 1746635 1746635 1 + C T GBM 1746636 + 1746616 1746656 41 TGGAGACGTTTGGCGTTCCCGCTGAAGAGCTTTTTACGGCC TGGAGACGTTTGGCGTTCCTGCTGAAGAGCTTTTTACGGCC < 41bp 0.534092231661946 0.738000443411562 NA NA prediction 0.407816423499232 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1746636 chrX:1746635 synonymous SNV . 0 20 hm7G_associated_SNPs_34355 0 0 0 0 2 ASMT chrX:1746664 5'GT 1746664 Upstream 30bp 31591 chr19 39759831 39759831 1 + C T rs201517019 39759832 + 39759812 39759852 41 GGACTGCAGGTGCCACTCCCGCCTCTTCCCCAGGACCTGGG GGACTGCAGGTGCCACTCCTGCCTCTTCCCCAGGACCTGGG < 41bp 0.537020457938463 0.740926510828067 NA NA prediction 0.407812105779209 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39759832 chr19:39759831 nonsynonymous SNV 0.426 2 20 hm7G_associated_SNPs_34356 0 0 0 0 2 IFNL2 chr19:39759792 3'AG 39759792 Downstream 40bp 31592 chr19 39759831 39759831 1 + C T rs201517019 39759832 + 39759812 39759852 41 GGACTGCAGGTGCCACTCCCGCCTCTTCCCCAGGACCTGGG GGACTGCAGGTGCCACTCCTGCCTCTTCCCCAGGACCTGGG < 41bp 0.537020457938463 0.740926510828067 NA NA prediction 0.407812105779209 Functional Gain - IFNL2 ENSG00000183709 CDS Human protein_coding chr19:39759832 chr19:39759831 nonsynonymous SNV 0.426 2 20 hm7G_associated_SNPs_34356 0 0 0 0 2 IFNL2 chr19:39759869 5'GT 39759869 Upstream 39bp 31593 chr11 4107730 4107730 1 + C T SKCM 4107731 + 4107711 4107751 41 TAGCCTGCAGAGCAGTGTTCGGCAGCGCCTGACGGAGCCAC TAGCCTGCAGAGCAGTGTTTGGCAGCGCCTGACGGAGCCAC < 41bp 0.559626124275371 0.763529518428961 NA NA prediction 0.407806788307181 Functional Gain - STIM1 ENSG00000167323 CDS Human protein_coding chr11:4107731 chr11:4107730 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_34357 0 0 1 0 2 STIM1 chr11:4107707 3'AG 4107707 Downstream 24bp 31594 chr11 4107730 4107730 1 + C T SKCM 4107731 + 4107711 4107751 41 TAGCCTGCAGAGCAGTGTTCGGCAGCGCCTGACGGAGCCAC TAGCCTGCAGAGCAGTGTTTGGCAGCGCCTGACGGAGCCAC < 41bp 0.559626124275371 0.763529518428961 NA NA prediction 0.407806788307181 Functional Gain - STIM1 ENSG00000167323 CDS Human protein_coding chr11:4107731 chr11:4107730 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_34357 0 0 1 0 2 STIM1 chr11:4107773 5'GT 4107773 Upstream 44bp 31595 chr15 22945047 22945047 1 + C T COAD 22945048 + 22945028 22945068 41 CGCCTTGTGCAGGTGGTCACGGGCTCGGGCCGCCAGGAGGC CGCCTTGTGCAGGTGGTCATGGGCTCGGGCCGCCAGGAGGC < 41bp 0.501446384588861 0.705349152307297 NA NA prediction 0.407805535436872 Functional Gain - CYFIP1 ENSG00000068793 CDS Human other chr15:22945048 chr15:22945047 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_34358 0 0 1 0 1 CYFIP1 chr15:22945040 3'AG 22945040 Downstream 8bp 31596 chr19 14159994 14159994 1 + C T CESC 14159995 + 14159975 14160015 41 AGTGGGGCCAACGCTTTGGCGACTCCAAGATGCCCCTCCAG AGTGGGGCCAACGCTTTGGTGACTCCAAGATGCCCCTCCAG < 41bp 0.520351232483708 0.724253746558663 NA NA prediction 0.407805028149911 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14159995 chr19:14159994 stopgain 0.943 0 20 hm7G_associated_SNPs_34359 0 0 0 0 1 IL27RA chr19:14159968 3'AG 14159968 Downstream 27bp 31597 chr1 161641195 161641195 1 + G A COAD 161641196 + 161641176 161641216 41 CCTCAGCAGCTCCCCCAAAGGCTGTGCTGAAACTCGAGCCC CCTCAGCAGCTCCCCCAAAAGCTGTGCTGAAACTCGAGCCC < 41bp 0.561584174802406 0.765485886846076 NA NA prediction 0.40780342408734 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641196 chr1:161641195 synonymous SNV . 0 20 hm7G_associated_SNPs_34362 0 0 0 0 2 FCGR2B chr1:161641182 3'AG 161641182 Downstream 14bp 31598 chr1 161641195 161641195 1 + G A COAD 161641196 + 161641176 161641216 41 CCTCAGCAGCTCCCCCAAAGGCTGTGCTGAAACTCGAGCCC CCTCAGCAGCTCCCCCAAAAGCTGTGCTGAAACTCGAGCCC < 41bp 0.561584174802406 0.765485886846076 NA NA prediction 0.40780342408734 Functional Gain - FCGR2B ENSG00000072694 CDS Human protein_coding chr1:161641196 chr1:161641195 synonymous SNV . 0 20 hm7G_associated_SNPs_34362 0 0 0 0 2 FCGR2B chr1:161641185 3'AG 161641185 Downstream 11bp 31599 chr15 83788357 83788357 1 + G A UCEC 83788358 + 83788338 83788378 41 GTATCTGAACACCGCATATGGGCACATGATCTGCTACTGGG GTATCTGAACACCGCATATAGGCACATGATCTGCTACTGGG < 41bp 0.526139920238068 0.730040353087182 NA NA prediction 0.407800865698227 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83788358 chr15:83788357 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34363 0 0 1 1 1 TM6SF1 chr15:83788433 5'GT 83788433 Upstream 77bp 31600 chr17 59534960 59534960 1 + G A rs35070263 59534961 + 59534941 59534981 41 GGAAGAAGTTCCACGAGGCGGGCACCGAGATGATCATCACT GGAAGAAGTTCCACGAGGCAGGCACCGAGATGATCATCACT < 41bp 0.571900595698369 0.775800863669775 NA NA prediction 0.407800535942812 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59534961 chr17:59534960 synonymous SNV . 0 20 hm7G_associated_SNPs_34365 1 0 0 0 2 TBX4 chr17:59534898 3'AG 59534898 Downstream 63bp 31601 chr17 59534960 59534960 1 + G A rs35070263 59534961 + 59534941 59534981 41 GGAAGAAGTTCCACGAGGCGGGCACCGAGATGATCATCACT GGAAGAAGTTCCACGAGGCAGGCACCGAGATGATCATCACT < 41bp 0.571900595698369 0.775800863669775 NA NA prediction 0.407800535942812 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59534961 chr17:59534960 synonymous SNV . 0 20 hm7G_associated_SNPs_34365 1 0 0 0 2 TBX4 chr17:59534992 5'GT 59534992 Upstream 33bp 31602 chr17 47295176 47295176 1 + G A CESC 47295177 + 47295157 47295197 41 TGTCCAGCGGCTGCCCCCCGGCCAGAAGGTCATCGCCCCAG TGTCCAGCGGCTGCCCCCCAGCCAGAAGGTCATCGCCCCAG < 41bp 0.599402103486742 0.803301490093621 NA NA prediction 0.40779877321376 Functional Gain - ABI3 ENSG00000108798 CDS Human protein_coding chr17:47295177 chr17:47295176 nonsynonymous SNV 0.186 0 20 hm7G_associated_SNPs_34366 0 0 0 0 1 ABI3 chr17:47295101 3'AG 47295101 Downstream 76bp 31603 chr3 113327382 113327382 1 + C T rs138289871 113327383 + 113327363 113327403 41 ATTATTCCAACTTCCAATTCGGTAATTAGAACTTATATCTA ATTATTCCAACTTCCAATTTGGTAATTAGAACTTATATCTA < 41bp 0.497268055823622 0.703899038022653 NA NA prediction 0.407798076045307 Functional Gain - SIDT1 ENSG00000072858 CDS Human protein_coding chr3:113327383 chr3:113327382 synonymous SNV . 0 20 hm7G_associated_SNPs_34368 0 0 0 0 1 SIDT1 chr3:113327383 5'GT 113327383 Upstream 2bp 31604 chr20 47628495 47628495 1 + C T UCEC 47628496 + 47628476 47628516 41 ACCATTTTCCTGCAGCCATCGATTCCTTTCAGGATGCTGTG ACCATTTTCCTGCAGCCATTGATTCCTTTCAGGATGCTGTG < 41bp 0.528756658799793 0.732654895490192 NA NA prediction 0.4077964733808 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47628496 chr20:47628495 synonymous SNV . 0 20 hm7G_associated_SNPs_34369 0 0 1 0 1 ARFGEF2 chr20:47628461 3'AG 47628461 Downstream 35bp 31605 chr17 78221999 78221999 1 + C T STAD 78222000 + 78221980 78222020 41 TGCAGTACGGCATCCTGGCCGGGGCCCTGGTGTCTCTGCTC TGCAGTACGGCATCCTGGCTGGGGCCCTGGTGTCTCTGCTC < 41bp 0.509689787250294 0.713586685045545 NA NA prediction 0.407793795590502 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78222000 chr17:78221999 synonymous SNV . 0 20 hm7G_associated_SNPs_34372 0 0 1 0 2 SLC26A11 chr17:78221929 3'AG 78221929 Downstream 71bp 31606 chr17 78221999 78221999 1 + C T STAD 78222000 + 78221980 78222020 41 TGCAGTACGGCATCCTGGCCGGGGCCCTGGTGTCTCTGCTC TGCAGTACGGCATCCTGGCTGGGGCCCTGGTGTCTCTGCTC < 41bp 0.509689787250294 0.713586685045545 NA NA prediction 0.407793795590502 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78222000 chr17:78221999 synonymous SNV . 0 20 hm7G_associated_SNPs_34372 0 0 1 0 2 SLC26A11 chr17:78222056 5'GT 78222056 Upstream 58bp 31607 chr8 23106740 23106740 1 + G A STAD 23106741 + 23106721 23106761 41 AGTCGAGGGGAGCTGCAGCGGGAGTCAGACTTCATGGCCAG AGTCGAGGGGAGCTGCAGCAGGAGTCAGACTTCATGGCCAG < 41bp 0.482671368258458 0.703896553344443 NA NA prediction 0.407793106688885 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23106741 chr8:23106740 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34373 0 0 1 0 1 CHMP7 chr8:23106723 3'AG 23106723 Downstream 18bp 31608 chr16 50659474 50659474 1 + G A LUSC 50659475 + 50659455 50659495 41 GTATGACTTTGACAACAACGGCAAGGTCACCCGAGAGGTGA GTATGACTTTGACAACAACAGCAAGGTCACCCGAGAGGTGA < 41bp 0.488085757943806 0.703895912596484 NA NA prediction 0.407791825192967 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50659475 chr16:50659474 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34374 0 0 1 0 2 NKD1 chr16:50659396 3'AG 50659396 Downstream 79bp 31609 chr16 50659474 50659474 1 + G A LUSC 50659475 + 50659455 50659495 41 GTATGACTTTGACAACAACGGCAAGGTCACCCGAGAGGTGA GTATGACTTTGACAACAACAGCAAGGTCACCCGAGAGGTGA < 41bp 0.488085757943806 0.703895912596484 NA NA prediction 0.407791825192967 Functional Gain - NKD1 ENSG00000140807 CDS Human protein_coding chr16:50659475 chr16:50659474 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34374 0 0 1 0 2 NKD1 chr16:50659491 5'GT 50659491 Upstream 18bp 31610 chrX 10106937 10106937 1 + C T GBM 10106938 + 10106918 10106958 41 CACCCTGGGTGCTTCGGGACGAGCGGCTCCGTGGCCTGCTG CACCCTGGGTGCTTCGGGATGAGCGGCTCCGTGGCCTGCTG < 41bp 0.507129681140465 0.711025359113739 NA NA prediction 0.407791355946547 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10106938 chrX:10106937 synonymous SNV . 0 20 hm7G_associated_SNPs_34375 0 0 0 0 1 WWC3 chrX:10106976 5'GT 10106976 Upstream 40bp 31611 chr1 1117804 1117804 1 + G T UCEC 1117805 + 1117785 1117825 41 ACCTCAAACACGAGAGAGAGGCCTTTTTCACCTTGTTTGAT ACCTCAAACACGAGAGAGATGCCTTTTTCACCTTGTTTGAT < 41bp 0.358360602948769 0.703887158937861 NA NA prediction 0.407774317875722 Functional Gain - TTLL10 ENSG00000162571 CDS Human protein_coding chr1:1117805 chr1:1117804 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_34380 0 0 0 0 1 TTLL10 chr1:1117826 5'GT 1117826 Upstream 23bp 31612 chr3 52812415 52812415 1 + C T rs34925267 52812416 + 52812396 52812436 41 GCAAAGTCACCTCTCGCTTCGCCCACTATGTTGTCACCAGC GCAAAGTCACCTCTCGCTTTGCCCACTATGTTGTCACCAGC < 41bp 0.540686556071213 0.744573698175227 NA NA prediction 0.407774284208029 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812416 chr3:52812415 synonymous SNV . 0 20 hm7G_associated_SNPs_34381 0 0 0 1 1 ITIH1 chr3:52812356 3'AG 52812356 Downstream 60bp 31613 chr19 33610010 33610010 1 + C T SKCM 33610011 + 33609991 33610031 41 TCGGCCCGCGGCTGCCTCCCGTCTTCTGCCCCAGTGAGTGC TCGGCCCGCGGCTGCCTCCTGTCTTCTGCCCCAGTGAGTGC < 41bp 0.518771451565894 0.722657486729891 NA NA prediction 0.407772070327993 Functional Gain - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33610011 chr19:33610010 synonymous SNV . 0 20 hm7G_associated_SNPs_34384 0 0 0 0 2 GPATCH1 chr19:33609916 3'AG 33609916 Downstream 95bp 31614 chr19 33610010 33610010 1 + C T SKCM 33610011 + 33609991 33610031 41 TCGGCCCGCGGCTGCCTCCCGTCTTCTGCCCCAGTGAGTGC TCGGCCCGCGGCTGCCTCCTGTCTTCTGCCCCAGTGAGTGC < 41bp 0.518771451565894 0.722657486729891 NA NA prediction 0.407772070327993 Functional Gain - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33610011 chr19:33610010 synonymous SNV . 0 20 hm7G_associated_SNPs_34384 0 0 0 0 2 GPATCH1 chr19:33610023 5'GT 33610023 Upstream 14bp 31615 chr4 44691392 44691392 1 + C T UCEC 44691393 + 44691373 44691413 41 TTCCAGTGTGACCGTTCATCGGGATAGTAGCCTTGCTCTGG TTCCAGTGTGACCGTTCATTGGGATAGTAGCCTTGCTCTGG < 41bp 0.526242310992244 0.730128069502956 NA NA prediction 0.407771517021425 Functional Gain - GUF1 ENSG00000151806 CDS Human protein_coding chr4:44691393 chr4:44691392 nonsynonymous SNV 0.986 3 20 hm7G_associated_SNPs_34385 0 0 1 1 1 GUF1 chr4:44691303 3'AG 44691303 Downstream 90bp 31616 chr8 22465547 22465547 1 + G A STAD 22465548 + 22465528 22465568 41 GAACAGATTTCCTGCCCGGGGCCCTCATGGACGGTTGGATC GAACAGATTTCCTGCCCGGAGCCCTCATGGACGGTTGGATC < 41bp 0.480812321105475 0.703884061062062 NA NA prediction 0.407768122124124 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22465548 chr8:22465547 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_34388 0 0 1 0 2 CCAR2 chr8:22465482 3'AG 22465482 Downstream 66bp 31617 chr8 22465547 22465547 1 + G A STAD 22465548 + 22465528 22465568 41 GAACAGATTTCCTGCCCGGGGCCCTCATGGACGGTTGGATC GAACAGATTTCCTGCCCGGAGCCCTCATGGACGGTTGGATC < 41bp 0.480812321105475 0.703884061062062 NA NA prediction 0.407768122124124 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22465548 chr8:22465547 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_34388 0 0 1 0 2 CCAR2 chr8:22465578 5'GT 22465578 Upstream 32bp 31618 chr1 110200230 110200230 1 + G A LAML 110200231 + 110200211 110200251 41 GCTGCCCTACTTGATTGATGGGGCTCACAAGATCACCCAGA GCTGCCCTACTTGATTGATAGGGCTCACAAGATCACCCAGA < 41bp 0.487082033662407 0.703883501050103 NA NA prediction 0.407767002100205 Functional Gain - GSTM4 ENSG00000168765 CDS Human protein_coding chr1:110200231 chr1:110200230 nonsynonymous SNV 0.926 3 20 hm7G_associated_SNPs_34389 0 0 0 0 2 GSTM4 chr1:110200212 3'AG 110200212 Downstream 19bp 31619 chr1 110200230 110200230 1 + G A LAML 110200231 + 110200211 110200251 41 GCTGCCCTACTTGATTGATGGGGCTCACAAGATCACCCAGA GCTGCCCTACTTGATTGATAGGGCTCACAAGATCACCCAGA < 41bp 0.487082033662407 0.703883501050103 NA NA prediction 0.407767002100205 Functional Gain - GSTM4 ENSG00000168765 CDS Human protein_coding chr1:110200231 chr1:110200230 nonsynonymous SNV 0.926 3 20 hm7G_associated_SNPs_34389 0 0 0 0 2 GSTM4 chr1:110200293 5'GT 110200293 Upstream 64bp 31620 chr2 208607013 208607013 1 + C T UCEC 208607014 + 208606994 208607034 41 ATTTATTTACAGATTTGTTCGTACTCTTTTTAGTGCTGCAC ATTTATTTACAGATTTGTTTGTACTCTTTTTAGTGCTGCAC < 41bp 0.496323827953083 0.703882433053445 NA NA prediction 0.407764866106891 Functional Gain - CCNYL1 ENSG00000163249 CDS Human protein_coding chr2:208607014 chr2:208607013 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_34391 0 0 1 0 2 CCNYL1 chr2:208606947 3'AG 208606947 Downstream 67bp 31621 chr2 208607013 208607013 1 + C T UCEC 208607014 + 208606994 208607034 41 ATTTATTTACAGATTTGTTCGTACTCTTTTTAGTGCTGCAC ATTTATTTACAGATTTGTTTGTACTCTTTTTAGTGCTGCAC < 41bp 0.496323827953083 0.703882433053445 NA NA prediction 0.407764866106891 Functional Gain - CCNYL1 ENSG00000163249 CDS Human protein_coding chr2:208607014 chr2:208607013 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_34391 0 0 1 0 2 CCNYL1 chr2:208607066 5'GT 208607066 Upstream 54bp 31622 chr18 28991345 28991345 1 + G A CESC 28991346 + 28991326 28991366 41 GGAAGAGGAGCTCTACCATGGGAACCCTGCGGGACTACGCT GGAAGAGGAGCTCTACCATAGGAACCCTGCGGGACTACGCT < 41bp 0.571492552246395 0.775374549685157 NA NA prediction 0.407763994877525 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28991346 chr18:28991345 nonsynonymous SNV 0.059 0 20 hm7G_associated_SNPs_34392 0 0 0 0 1 DSG4 chr18:28991411 5'GT 28991411 Upstream 67bp 31623 chr19 18963849 18963849 1 + C T CESC 18963850 + 18963830 18963870 41 GCCTTAACAAGAAGAGAATCGCCTACTTCACTTTGCCCAAG GCCTTAACAAGAAGAGAATTGCCTACTTCACTTTGCCCAAG < 41bp 0.505896186115201 0.709778023537736 NA NA prediction 0.407763674845069 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18963850 chr19:18963849 synonymous SNV . 0 20 hm7G_associated_SNPs_34393 0 0 1 0 3 UPF1 chr19:18963796 3'AG 18963796 Downstream 54bp 31624 chr19 18963849 18963849 1 + C T CESC 18963850 + 18963830 18963870 41 GCCTTAACAAGAAGAGAATCGCCTACTTCACTTTGCCCAAG GCCTTAACAAGAAGAGAATTGCCTACTTCACTTTGCCCAAG < 41bp 0.505896186115201 0.709778023537736 NA NA prediction 0.407763674845069 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18963850 chr19:18963849 synonymous SNV . 0 20 hm7G_associated_SNPs_34393 0 0 1 0 3 UPF1 chr19:18963880 5'GT 18963880 Upstream 32bp 31625 chr19 18963849 18963849 1 + C T CESC 18963850 + 18963830 18963870 41 GCCTTAACAAGAAGAGAATCGCCTACTTCACTTTGCCCAAG GCCTTAACAAGAAGAGAATTGCCTACTTCACTTTGCCCAAG < 41bp 0.505896186115201 0.709778023537736 NA NA prediction 0.407763674845069 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18963850 chr19:18963849 synonymous SNV . 0 20 hm7G_associated_SNPs_34393 0 0 1 0 3 UPF1 chr19:18963913 5'GT 18963913 Upstream 65bp 31626 chr17 74900465 74900465 1 + G A rs61736672 74900466 + 74900446 74900486 41 TGCCCTGGAGGAACCAGACGGCTGCCCAGAGGGCACCCAAG TGCCCTGGAGGAACCAGACAGCTGCCCAGAGGGCACCCAAG < 41bp 0.596012713786153 0.799893238357938 NA NA prediction 0.407761049143572 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74900466 chr17:74900465 synonymous SNV . 0 20 hm7G_associated_SNPs_34394 0 0 0 0 1 MGAT5B chr17:74900504 5'GT 74900504 Upstream 40bp 31627 chr17 4798734 4798734 1 + C T STAD 4798735 + 4798715 4798755 41 TGGACTCATTGGGCGGCGACGCTTCCAGCAGATGGATGTGC TGGACTCATTGGGCGGCGATGCTTCCAGCAGATGGATGTGC < 41bp 0.548814376520788 0.752694617819262 NA NA prediction 0.407760482596947 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4798735 chr17:4798734 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_34395 0 0 1 0 2 MINK1 chr17:4798645 3'AG 4798645 Downstream 90bp 31628 chr17 4798734 4798734 1 + C T STAD 4798735 + 4798715 4798755 41 TGGACTCATTGGGCGGCGACGCTTCCAGCAGATGGATGTGC TGGACTCATTGGGCGGCGATGCTTCCAGCAGATGGATGTGC < 41bp 0.548814376520788 0.752694617819262 NA NA prediction 0.407760482596947 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4798735 chr17:4798734 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_34395 0 0 1 0 2 MINK1 chr17:4798788 5'GT 4798788 Upstream 55bp 31629 chr15 43443992 43443992 1 + C T PRAD 43443993 + 43443973 43444013 41 TTATCTGGTCTTTAGGTACCGGATTTTTGCTTTTGATCACG TTATCTGGTCTTTAGGTACTGGATTTTTGCTTTTGATCACG < 41bp 0.510698417871267 0.714577101577558 NA NA prediction 0.407757367412583 Functional Gain - TMEM62 ENSG00000137842 CDS Human protein_coding chr15:43443993 chr15:43443992 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_34397 0 0 0 0 1 TMEM62 chr15:43443988 3'AG 43443988 Downstream 5bp 31630 chr19 6821868 6821868 1 + C T UCEC 6821869 + 6821849 6821889 41 GTGGCCTGTCCGACCAGATCGAGTGAGTGCTCAGGCCTGTG GTGGCCTGTCCGACCAGATTGAGTGAGTGCTCAGGCCTGTG < 41bp 0.492955915933582 0.703876380472892 NA NA prediction 0.407752760945784 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6821869 chr19:6821868 synonymous SNV . 0 20 hm7G_associated_SNPs_34399 0 0 0 0 2 VAV1 chr19:6821802 3'AG 6821802 Downstream 67bp 31631 chr19 6821868 6821868 1 + C T UCEC 6821869 + 6821849 6821889 41 GTGGCCTGTCCGACCAGATCGAGTGAGTGCTCAGGCCTGTG GTGGCCTGTCCGACCAGATTGAGTGAGTGCTCAGGCCTGTG < 41bp 0.492955915933582 0.703876380472892 NA NA prediction 0.407752760945784 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6821869 chr19:6821868 synonymous SNV . 0 20 hm7G_associated_SNPs_34399 0 0 0 0 2 VAV1 chr19:6821870 5'GT 6821870 Upstream 3bp 31632 chr11 64988580 64988580 1 + C T UCEC 64988581 + 64988561 64988601 41 CTACCTGATTCGCCCCTGGCGGTGCCTGCAGTTTGCCATCT CTACCTGATTCGCCCCTGGTGGTGCCTGCAGTTTGCCATCT < 41bp 0.497324630818933 0.703875204832008 NA NA prediction 0.407750409664016 Functional Gain - SLC22A20 ENSG00000197847 ncRNA_exonic Human transcribed_unitary_pseudogene chr11:64988581 chr11:64988580 . . 0 20 hm7G_associated_SNPs_34401 0 0 0 0 1 SLC22A20 chr11:64988635 5'GT 64988635 Upstream 56bp 31633 chr15 20488861 20488861 1 + G T GBM 20488862 + 20488842 20488882 41 GTTTCTGTTGGGACTGCTGGGTATAACCGTGCTGTGGACTG GTTTCTGTTGGGACTGCTGTGTATAACCGTGCTGTGGACTG < 41bp 0.401998814878072 0.703872627112789 NA NA prediction 0.407745254225579 Functional Gain - CHEK2P2 ENSG00000259156 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr15:20488862 chr15:20488861 . . 0 20 hm7G_associated_SNPs_34403 0 0 0 1 1 CHEK2P2 chr15:20488912 5'GT 20488912 Upstream 52bp 31634 chr5 153789255 153789255 1 + C T COAD 153789256 + 153789236 153789276 41 AGTTTCAAGTGGTTTATGACGAAGATAGCCTGGGACCTGCC AGTTTCAAGTGGTTTATGATGAAGATAGCCTGGGACCTGCC < 41bp 0.531949606547879 0.735820062418717 NA NA prediction 0.407740911741677 Functional Gain - GALNT10 ENSG00000164574 CDS Human protein_coding chr5:153789256 chr5:153789255 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_34404 0 0 0 0 1 GALNT10 chr5:153789322 5'GT 153789322 Upstream 68bp 31635 chr14 20818778 20818778 1 + C T UCEC 20818779 + 20818759 20818799 41 TGTTTGGATGAGATGGGGCCGAGGTAATGATTTTTATTGAG TGTTTGGATGAGATGGGGCTGAGGTAATGATTTTTATTGAG < 41bp 0.539252823849457 0.743121305385566 NA NA prediction 0.407736963072218 Functional Gain - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20818779 chr14:20818778 stopgain 0.999 1 20 hm7G_associated_SNPs_34405 0 0 1 0 2 PARP2 chr14:20818685 3'AG 20818685 Downstream 94bp 31636 chr14 20818778 20818778 1 + C T UCEC 20818779 + 20818759 20818799 41 TGTTTGGATGAGATGGGGCCGAGGTAATGATTTTTATTGAG TGTTTGGATGAGATGGGGCTGAGGTAATGATTTTTATTGAG < 41bp 0.539252823849457 0.743121305385566 NA NA prediction 0.407736963072218 Functional Gain - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20818779 chr14:20818778 stopgain 0.999 1 20 hm7G_associated_SNPs_34405 0 0 1 0 2 PARP2 chr14:20818781 5'GT 20818781 Upstream 4bp 31637 chr16 72046120 72046120 1 + G A LGG 72046121 + 72046101 72046141 41 TGTTCGCTTCACCTCCCTGGGGCTCCTTCCACGGGCCAGAT TGTTCGCTTCACCTCCCTGAGGCTCCTTCCACGGGCCAGAT < 41bp 0.542472709310575 0.746340113374012 NA NA prediction 0.407734808126874 Functional Gain - DHODH ENSG00000102967 CDS Human protein_coding chr16:72046121 chr16:72046120 nonsynonymous SNV 0.852 2 20 hm7G_associated_SNPs_34406 0 0 1 0 1 DHODH chr16:72046161 5'GT 72046161 Upstream 42bp 31638 chr19 54409689 54409689 1 + C T ESCA 54409690 + 54409670 54409710 41 CTGGAACGATTGGAGATCCCGCCTCCTTTCAGACCCCGCCC CTGGAACGATTGGAGATCCTGCCTCCTTTCAGACCCCGCCC < 41bp 0.530216390261182 0.734083025911143 NA NA prediction 0.407733271299922 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54409690 chr19:54409689 nonsynonymous SNV 0.910 1 20 hm7G_associated_SNPs_34408 0 0 0 0 1 PRKCG chr19:54409711 5'GT 54409711 Upstream 23bp 31639 chr1 77510219 77510219 1 + C T BLCA 77510220 + 77510200 77510240 41 CCTGAGCCAGGTGCTGCCCCGGCTGAAGGCCTTCATGATTA CCTGAGCCAGGTGCTGCCCTGGCTGAAGGCCTTCATGATTA < 41bp 0.490301444221032 0.703866210385405 NA NA prediction 0.407732420770811 Functional Gain - ST6GALNAC5 ENSG00000117069 CDS Human protein_coding chr1:77510220 chr1:77510219 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_34409 0 0 0 0 1 ST6GALNAC5 chr1:77510298 5'GT 77510298 Upstream 80bp 31640 chr7 55493057 55493057 1 + C T COAD 55493058 + 55493038 55493078 41 GCCATGGGACTGCTGGCAACGGCTATTCCTTCCTGTCCCTT GCCATGGGACTGCTGGCAATGGCTATTCCTTCCTGTCCCTT < 41bp 0.549504162278739 0.753370350986018 NA NA prediction 0.407732377414557 Functional Gain - LANCL2 ENSG00000132434 CDS Human protein_coding chr7:55493058 chr7:55493057 synonymous SNV . 0 20 hm7G_associated_SNPs_34410 0 0 1 0 1 LANCL2 chr7:55493123 5'GT 55493123 Upstream 67bp 31641 chr16 27786322 27786322 1 + C T CESC 27786323 + 27786303 27786343 41 GGGTGTGGGCGGGGACGTCCGCACCCCAGACAAGCTCATCG GGGTGTGGGCGGGGACGTCTGCACCCCAGACAAGCTCATCG < 41bp 0.493757423632669 0.703865934898036 NA NA prediction 0.407731869796071 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27786323 chr16:27786322 nonsynonymous SNV 0.058 4 20 hm7G_associated_SNPs_34411 0 0 0 0 2 KIAA0556 chr16:27786266 3'AG 27786266 Downstream 57bp 31642 chr16 27786322 27786322 1 + C T CESC 27786323 + 27786303 27786343 41 GGGTGTGGGCGGGGACGTCCGCACCCCAGACAAGCTCATCG GGGTGTGGGCGGGGACGTCTGCACCCCAGACAAGCTCATCG < 41bp 0.493757423632669 0.703865934898036 NA NA prediction 0.407731869796071 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27786323 chr16:27786322 nonsynonymous SNV 0.058 4 20 hm7G_associated_SNPs_34411 0 0 0 0 2 KIAA0556 chr16:27786405 5'GT 27786405 Upstream 84bp 31643 chr11 94328549 94328549 1 + G T UCEC 94328550 + 94328530 94328570 41 GACACGTCTCAGTCCTTCAGGCCGGCAGCAGCGCCTGGCCA GACACGTCTCAGTCCTTCATGCCGGCAGCAGCGCCTGGCCA < 41bp 0.354260944538783 0.703864887613062 NA NA prediction 0.407729775226124 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94328550 chr11:94328549 nonsynonymous SNV 0.679 1 20 hm7G_associated_SNPs_34412 0 0 0 0 2 PIWIL4 chr11:94328475 3'AG 94328475 Downstream 75bp 31644 chr11 94328549 94328549 1 + G T UCEC 94328550 + 94328530 94328570 41 GACACGTCTCAGTCCTTCAGGCCGGCAGCAGCGCCTGGCCA GACACGTCTCAGTCCTTCATGCCGGCAGCAGCGCCTGGCCA < 41bp 0.354260944538783 0.703864887613062 NA NA prediction 0.407729775226124 Functional Gain - PIWIL4 ENSG00000134627 CDS Human protein_coding chr11:94328550 chr11:94328549 nonsynonymous SNV 0.679 1 20 hm7G_associated_SNPs_34412 0 0 0 0 2 PIWIL4 chr11:94328592 5'GT 94328592 Upstream 44bp 31645 chr1 201750143 201750143 1 + C T COAD 201750144 + 201750124 201750164 41 TTTCTCTTTTCTTTAGCTACGCACAGACTCAGAGAAGCGCT TTTCTCTTTTCTTTAGCTATGCACAGACTCAGAGAAGCGCT < 41bp 0.514170670734545 0.718034649000326 NA NA prediction 0.407727956531563 Functional Gain - NAV1 ENSG00000134369 CDS Human protein_coding chr1:201750144 chr1:201750143 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_34413 0 0 0 0 1 NAV1 chr1:201750140 3'AG 201750140 Downstream 4bp 31646 chr5 176083787 176083787 1 + G A MESO 176083788 + 176083768 176083808 41 ACAACCTGATTGTGGTGGCGGGAGTCTTCATGGGCATCGCC ACAACCTGATTGTGGTGGCAGGAGTCTTCATGGGCATCGCC < 41bp 0.495493543786332 0.70386329782963 NA NA prediction 0.407726595659259 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083788 chr5:176083787 synonymous SNV . 0 20 hm7G_associated_SNPs_34414 0 0 1 0 2 TSPAN17 chr5:176083701 3'AG 176083701 Downstream 87bp 31647 chr5 176083787 176083787 1 + G A MESO 176083788 + 176083768 176083808 41 ACAACCTGATTGTGGTGGCGGGAGTCTTCATGGGCATCGCC ACAACCTGATTGTGGTGGCAGGAGTCTTCATGGGCATCGCC < 41bp 0.495493543786332 0.70386329782963 NA NA prediction 0.407726595659259 Functional Gain - TSPAN17 ENSG00000048140 CDS Human protein_coding chr5:176083788 chr5:176083787 synonymous SNV . 0 20 hm7G_associated_SNPs_34414 0 0 1 0 2 TSPAN17 chr5:176083817 5'GT 176083817 Upstream 31bp 31648 chr9 123880693 123880693 1 + C T UCEC 123880694 + 123880674 123880714 41 ACAACTTGTAAATAAATTACGCCAGGAAGCTCTGGATCTAG ACAACTTGTAAATAAATTATGCCAGGAAGCTCTGGATCTAG < 41bp 0.508992750565748 0.712855922754154 NA NA prediction 0.407726344376812 Functional Gain - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123880694 chr9:123880693 nonsynonymous SNV 0.963 3 20 hm7G_associated_SNPs_34415 0 0 0 0 1 CNTRL chr9:123880624 3'AG 123880624 Downstream 70bp 31649 chr1 20005081 20005081 1 + G A SKCM 20005082 + 20005062 20005102 41 GCCCAGGACCCCACGCCCAGGGGTGGAGTCTGCTGACAGCA GCCCAGGACCCCACGCCCAAGGGTGGAGTCTGCTGACAGCA < 41bp 0.466352562643296 0.703862834556895 NA NA prediction 0.40772566911379 Functional Gain - HTR6 ENSG00000158748 CDS Human protein_coding chr1:20005082 chr1:20005081 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_34416 0 0 0 0 1 HTR6 chr1:20005060 3'AG 20005060 Downstream 22bp 31650 chr4 2632848 2632848 1 + C T UCEC 2632849 + 2632829 2632869 41 TCCTGCTTGAGGAGTACGGCGCCCTCTGCCAGGCCGCACGC TCCTGCTTGAGGAGTACGGTGCCCTCTGCCAGGCCGCACGC < 41bp 0.532161651956505 0.736024365471831 NA NA prediction 0.407725427030651 Functional Gain - FAM193A ENSG00000125386 CDS Human protein_coding chr4:2632849 chr4:2632848 synonymous SNV . 0 20 hm7G_associated_SNPs_34417 0 0 0 0 1 FAM193A chr4:2632896 5'GT 2632896 Upstream 49bp 31651 chr17 41165122 41165122 1 + C T SKCM 41165123 + 41165103 41165143 41 GGACACACCCAGCAGGACCCGGAAGTGCCTAAGTCTTTAGT GGACACACCCAGCAGGACCTGGAAGTGCCTAAGTCTTTAGT < 41bp 0.531908531633132 0.735769428670979 NA NA prediction 0.407721794075694 Functional Gain - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165123 chr17:41165122 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_34419 0 0 1 0 2 IFI35 chr17:41165064 3'AG 41165064 Downstream 59bp 31652 chr17 41165122 41165122 1 + C T SKCM 41165123 + 41165103 41165143 41 GGACACACCCAGCAGGACCCGGAAGTGCCTAAGTCTTTAGT GGACACACCCAGCAGGACCTGGAAGTGCCTAAGTCTTTAGT < 41bp 0.531908531633132 0.735769428670979 NA NA prediction 0.407721794075694 Functional Gain - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165123 chr17:41165122 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_34419 0 0 1 0 2 IFI35 chr17:41165211 5'GT 41165211 Upstream 90bp 31653 chr21 42615346 42615346 1 + G T LIHC 42615347 + 42615327 42615367 41 TTGTATAAAGGAGACATCTGGTATACCCCTATTAAGGAAGA TTGTATAAAGGAGACATCTTGTATACCCCTATTAAGGAAGA < 41bp 0.365829749102053 0.703860266332224 NA NA prediction 0.407720532664448 Functional Gain - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42615347 chr21:42615346 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34420 0 0 1 0 2 BACE2 chr21:42615303 3'AG 42615303 Downstream 44bp 31654 chr21 42615346 42615346 1 + G T LIHC 42615347 + 42615327 42615367 41 TTGTATAAAGGAGACATCTGGTATACCCCTATTAAGGAAGA TTGTATAAAGGAGACATCTTGTATACCCCTATTAAGGAAGA < 41bp 0.365829749102053 0.703860266332224 NA NA prediction 0.407720532664448 Functional Gain - BACE2 ENSG00000182240 CDS Human protein_coding chr21:42615347 chr21:42615346 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34420 0 0 1 0 2 BACE2 chr21:42615437 5'GT 42615437 Upstream 92bp 31655 chr1 109805502 109805502 1 + G A HNSC 109805503 + 109805483 109805523 41 AGCTTCCCAGTCCGAATGCGGCAGTTCGTGGGCTGCATGCG AGCTTCCCAGTCCGAATGCAGCAGTTCGTGGGCTGCATGCG < 41bp 0.535645610951011 0.739501251577951 NA NA prediction 0.407711281253879 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109805503 chr1:109805502 nonsynonymous SNV 0.945 2 20 hm7G_associated_SNPs_34422 0 0 1 0 2 CELSR2 chr1:109805428 3'AG 109805428 Downstream 75bp 31656 chr1 109805502 109805502 1 + G A HNSC 109805503 + 109805483 109805523 41 AGCTTCCCAGTCCGAATGCGGCAGTTCGTGGGCTGCATGCG AGCTTCCCAGTCCGAATGCAGCAGTTCGTGGGCTGCATGCG < 41bp 0.535645610951011 0.739501251577951 NA NA prediction 0.407711281253879 Functional Gain - CELSR2 ENSG00000143126 CDS Human protein_coding chr1:109805503 chr1:109805502 nonsynonymous SNV 0.945 2 20 hm7G_associated_SNPs_34422 0 0 1 0 2 CELSR2 chr1:109805591 5'GT 109805591 Upstream 90bp 31657 chr13 31318280 31318280 1 + C T OV 31318281 + 31318261 31318301 41 CGGAACACTTGCCTTTGAGCGGGTCTACACTGCCAAGTGAG CGGAACACTTGCCTTTGAGTGGGTCTACACTGCCAAGTGAG < 41bp 0.53399790067677 0.737853325603407 NA NA prediction 0.407710849853274 Functional Gain - ALOX5AP ENSG00000132965 CDS Human protein_coding chr13:31318281 chr13:31318280 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34423 0 0 0 0 2 ALOX5AP chr13:31318197 3'AG 31318197 Downstream 84bp 31658 chr13 31318280 31318280 1 + C T OV 31318281 + 31318261 31318301 41 CGGAACACTTGCCTTTGAGCGGGTCTACACTGCCAAGTGAG CGGAACACTTGCCTTTGAGTGGGTCTACACTGCCAAGTGAG < 41bp 0.53399790067677 0.737853325603407 NA NA prediction 0.407710849853274 Functional Gain - ALOX5AP ENSG00000132965 CDS Human protein_coding chr13:31318281 chr13:31318280 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34423 0 0 0 0 2 ALOX5AP chr13:31318296 5'GT 31318296 Upstream 17bp 31659 chr16 23364372 23364372 1 + G A CESC 23364373 + 23364353 23364393 41 AAAGATCTGTAATGCCCACGGGTGCAAAATGGCCATGAGAC AAAGATCTGTAATGCCCACAGGTGCAAAATGGCCATGAGAC < 41bp 0.547431806798884 0.751285599314853 NA NA prediction 0.407707585031938 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23364373 chr16:23364372 nonsynonymous SNV 0.604 0 20 hm7G_associated_SNPs_34424 0 0 0 0 1 SCNN1B chr16:23364395 5'GT 23364395 Upstream 24bp 31660 chr19 36220083 36220083 1 + C T BLCA 36220084 + 36220064 36220104 41 CGGGGCGGCTCTTGTACATCGGGCAGAACGAGTGGACACAC CGGGGCGGCTCTTGTACATTGGGCAGAACGAGTGGACACAC < 41bp 0.510875428718139 0.714728969759937 NA NA prediction 0.407707082083596 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36220084 chr19:36220083 synonymous SNV . 0 20 hm7G_associated_SNPs_34425 0 0 1 0 1 KMT2B chr19:36220060 3'AG 36220060 Downstream 24bp 31661 chr14 96904192 96904192 1 + C T UCEC 96904193 + 96904173 96904213 41 CCAGAAAATTTGCAGCATACGTAGTTGCTGCTGGACTCCAG CCAGAAAATTTGCAGCATATGTAGTTGCTGCTGGACTCCAG < 41bp 0.527649824061502 0.731502568386109 NA NA prediction 0.407705488649215 Functional Gain - AK7 ENSG00000140057 CDS Human protein_coding chr14:96904193 chr14:96904192 synonymous SNV . 0 20 hm7G_associated_SNPs_34426 0 0 0 0 2 AK7 chr14:96904172 3'AG 96904172 Downstream 21bp 31662 chr14 96904192 96904192 1 + C T UCEC 96904193 + 96904173 96904213 41 CCAGAAAATTTGCAGCATACGTAGTTGCTGCTGGACTCCAG CCAGAAAATTTGCAGCATATGTAGTTGCTGCTGGACTCCAG < 41bp 0.527649824061502 0.731502568386109 NA NA prediction 0.407705488649215 Functional Gain - AK7 ENSG00000140057 CDS Human protein_coding chr14:96904193 chr14:96904192 synonymous SNV . 0 20 hm7G_associated_SNPs_34426 0 0 0 0 2 AK7 chr14:96904252 5'GT 96904252 Upstream 61bp 31663 chr1 36359307 36359307 1 + C T CESC 36359308 + 36359288 36359328 41 GGCCGCTCCTTCTTCTCACCGCCTGAGGGCTACTACCACCC GGCCGCTCCTTCTTCTCACTGCCTGAGGGCTACTACCACCC < 41bp 0.498477745488906 0.703852743667167 NA NA prediction 0.407705487334333 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36359308 chr1:36359307 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_34427 0 0 1 0 1 AGO1 chr1:36359275 3'AG 36359275 Downstream 33bp 31664 chr16 19194908 19194908 1 + C T rs78637824 19194909 + 19194889 19194929 41 TTAAACCCATCGAGTTTGGCGTTCTCAGCGCCAAGAAGGAG TTAAACCCATCGAGTTTGGTGTTCTCAGCGCCAAGAAGGAG < 41bp 0.516914900311363 0.720766822881554 NA NA prediction 0.407703845140382 Functional Gain - SYT17 ENSG00000103528 CDS Human protein_coding chr16:19194909 chr16:19194908 synonymous SNV . 0 20 hm7G_associated_SNPs_34431 0 0 0 0 1 SYT17 chr16:19194850 3'AG 19194850 Downstream 59bp 31665 chr12 6964648 6964648 1 + C T COAD 6964649 + 6964629 6964669 41 AGAGACATTTCAATAAGACCGGCCAGCGAGTCTACTTGCAC AGAGACATTTCAATAAGACTGGCCAGCGAGTCTACTTGCAC < 41bp 0.532294366595249 0.736144756205794 NA NA prediction 0.407700779221091 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6964649 chr12:6964648 synonymous SNV . 0 20 hm7G_associated_SNPs_34432 0 0 1 0 2 USP5 chr12:6964565 3'AG 6964565 Downstream 84bp 31666 chr12 6964648 6964648 1 + C T COAD 6964649 + 6964629 6964669 41 AGAGACATTTCAATAAGACCGGCCAGCGAGTCTACTTGCAC AGAGACATTTCAATAAGACTGGCCAGCGAGTCTACTTGCAC < 41bp 0.532294366595249 0.736144756205794 NA NA prediction 0.407700779221091 Functional Gain - USP5 ENSG00000111667 CDS Human protein_coding chr12:6964649 chr12:6964648 synonymous SNV . 0 20 hm7G_associated_SNPs_34432 0 0 1 0 2 USP5 chr12:6964690 5'GT 6964690 Upstream 43bp 31667 chr8 95654294 95654294 1 + G A SKCM 95654295 + 95654275 95654315 41 TGTCCTCGGCGTCGCAGCTGGACCAAGCCCTCCGACAGGTG TGTCCTCGGCGTCGCAGCTAGACCAAGCCCTCCGACAGGTG < 41bp 0.50891110507794 0.712759179579221 NA NA prediction 0.407696149002563 Functional Gain - ESRP1 ENSG00000104413 CDS Human protein_coding chr8:95654295 chr8:95654294 synonymous SNV . 0 20 hm7G_associated_SNPs_34434 0 0 0 0 1 ESRP1 chr8:95654312 5'GT 95654312 Upstream 19bp 31668 chr16 818438 818438 1 + G A rs142972507 818439 + 818419 818459 41 ACGTGGAGGGCCTGAAGGCGGAGGAGCGGCACCGCCCGGTG ACGTGGAGGGCCTGAAGGCAGAGGAGCGGCACCGCCCGGTG < 41bp 0.559732435132796 0.763579133701945 NA NA prediction 0.407693397138296 Functional Gain - MSLN ENSG00000102854 CDS Human protein_coding chr16:818439 chr16:818438 synonymous SNV . 0 20 hm7G_associated_SNPs_34435 0 0 1 0 1 MSLN chr16:818379 3'AG 818379 Downstream 60bp 31669 chr7 128489437 128489437 1 + G A SKCM 128489438 + 128489418 128489458 41 AGGAGACGGTGATCACGGTGGATGCCAAGGCAGCCGGTGAG AGGAGACGGTGATCACGGTAGATGCCAAGGCAGCCGGTGAG < 41bp 0.508920793780234 0.712765500706198 NA NA prediction 0.407689413851928 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128489438 chr7:128489437 synonymous SNV . 0 20 hm7G_associated_SNPs_34436 0 0 1 0 1 FLNC chr7:128489385 3'AG 128489385 Downstream 53bp 31670 chr8 142432392 142432392 1 + C T HNSC 142432393 + 142432373 142432413 41 GGTGAGCTACAAACACATGCGCTTCCTCATCACCCACAACC GGTGAGCTACAAACACATGTGCTTCCTCATCACCCACAACC < 41bp 0.52987708440147 0.733721280040537 NA NA prediction 0.407688391278134 Functional Gain - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142432393 chr8:142432392 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_34437 0 0 0 0 1 PTP4A3 chr8:142432445 5'GT 142432445 Upstream 54bp 31671 chr1 233497874 233497874 1 + C T STAD 233497875 + 233497855 233497895 41 GGAGGAGCTGCTAAAGCGGCGTGAGCAGCAGCTGGCAGAGC GGAGGAGCTGCTAAAGCGGTGTGAGCAGCAGCTGGCAGAGC < 41bp 0.515736896148041 0.719580537179155 NA NA prediction 0.407687282062228 Functional Gain - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233497875 chr1:233497874 nonsynonymous SNV 0.523 4 20 hm7G_associated_SNPs_34438 0 0 0 0 1 MAP3K21 chr1:233497799 3'AG 233497799 Downstream 76bp 31672 chr19 16974595 16974595 1 + C T BLCA 16974596 + 16974576 16974616 41 AGCTTCACCGCTGTGAGGACGAGCGCTTCGAGGTGTGTGTG AGCTTCACCGCTGTGAGGATGAGCGCTTCGAGGTGTGTGTG < 41bp 0.536837841260187 0.740678023366012 NA NA prediction 0.407680364211649 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16974596 chr19:16974595 synonymous SNV . 0 20 hm7G_associated_SNPs_34441 0 0 1 0 1 SIN3B chr19:16974607 5'GT 16974607 Upstream 13bp 31673 chr9 139235390 139235390 1 + G A rs200756659 139235391 + 139235371 139235411 41 GCAGCTGCAGCTGGTGCTCGGCCGCCTGACCAGCCCGGCAG GCAGCTGCAGCTGGTGCTCAGCCGCCTGACCAGCCCGGCAG < 41bp 0.464892676074671 0.703838334924904 NA NA prediction 0.407676669849808 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139235391 chr9:139235390 nonsynonymous SNV 0.295 5 20 hm7G_associated_SNPs_34442 0 0 1 0 1 GPSM1 chr9:139235327 3'AG 139235327 Downstream 64bp 31674 chr1 206325259 206325259 1 + G A rs79881900 206325260 + 206325240 206325280 41 GGAAGGACTAACCGTGGTTGGCCAGCAGTTTGGAGAAAGTG GGAAGGACTAACCGTGGTTAGCCAGCAGTTTGGAGAAAGTG < 41bp 0.539810315554949 0.743648241320249 NA NA prediction 0.407675851530598 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206325260 chr1:206325259 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_34443 0 0 0 0 1 CTSE chr1:206325238 3'AG 206325238 Downstream 22bp 31675 chr9 117008171 117008171 1 + C T COAD 117008172 + 117008152 117008192 41 CCAGGGGATCCTGGTCGGCCGGGGCCTGTGGGAGAGCAGGT CCAGGGGATCCTGGTCGGCTGGGGCCTGTGGGAGAGCAGGT < 41bp 0.525552960654895 0.729386924940038 NA NA prediction 0.407667928570286 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117008172 chr9:117008171 nonsynonymous SNV 0.171 3 20 hm7G_associated_SNPs_34445 0 0 1 0 2 COL27A1 chr9:117008146 3'AG 117008146 Downstream 26bp 31676 chr9 117008171 117008171 1 + C T COAD 117008172 + 117008152 117008192 41 CCAGGGGATCCTGGTCGGCCGGGGCCTGTGGGAGAGCAGGT CCAGGGGATCCTGGTCGGCTGGGGCCTGTGGGAGAGCAGGT < 41bp 0.525552960654895 0.729386924940038 NA NA prediction 0.407667928570286 Functional Gain - COL27A1 ENSG00000196739 CDS Human protein_coding chr9:117008172 chr9:117008171 nonsynonymous SNV 0.171 3 20 hm7G_associated_SNPs_34445 0 0 1 0 2 COL27A1 chr9:117008190 5'GT 117008190 Upstream 20bp 31677 chr20 13140729 13140729 1 + C T SKCM 13140730 + 13140710 13140750 41 CACTCCCCTCGCAGAAGCTCGGGCTCGGTTTTGTGTTTCAG CACTCCCCTCGCAGAAGCTTGGGCTCGGTTTTGTGTTTCAG < 41bp 0.513820062167015 0.717653940795171 NA NA prediction 0.407667757256313 Functional Gain - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13140730 chr20:13140729 nonsynonymous SNV 0.983 5 20 hm7G_associated_SNPs_34446 0 0 0 0 2 SPTLC3 chr20:13140650 3'AG 13140650 Downstream 80bp 31678 chr20 13140729 13140729 1 + C T SKCM 13140730 + 13140710 13140750 41 CACTCCCCTCGCAGAAGCTCGGGCTCGGTTTTGTGTTTCAG CACTCCCCTCGCAGAAGCTTGGGCTCGGTTTTGTGTTTCAG < 41bp 0.513820062167015 0.717653940795171 NA NA prediction 0.407667757256313 Functional Gain - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13140730 chr20:13140729 nonsynonymous SNV 0.983 5 20 hm7G_associated_SNPs_34446 0 0 0 0 2 SPTLC3 chr20:13140779 5'GT 13140779 Upstream 51bp 31679 chr9 71851938 71851938 1 + C T COAD 71851939 + 71851919 71851959 41 GGCAGATTTCTGGAGAATGCGTGGCCAGAGGTCTGGGGTGA GGCAGATTTCTGGAGAATGTGTGGCCAGAGGTCTGGGGTGA < 41bp 0.495667096270922 0.7038325122541 NA NA prediction 0.407665024508201 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71851939 chr9:71851938 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34447 0 0 1 0 1 TJP2 chr9:71851865 3'AG 71851865 Downstream 74bp 31680 chr20 26061971 26061971 1 + C T UCEC 26061972 + 26061952 26061992 41 TCTGCGCCTCAGTCGGCATCGCAGCTGATGGTGAAACTTTT TCTGCGCCTCAGTCGGCATTGCAGCTGATGGTGAAACTTTT < 41bp 0.501915099649565 0.705747214805735 NA NA prediction 0.407664230312339 Functional Gain - FAM182A ENSG00000125804 ncRNA_exonic Human processed_transcript chr20:26061972 chr20:26061971 . . 0 20 hm7G_associated_SNPs_34448 0 0 0 0 1 FAM182A chr20:26062026 5'GT 26062026 Upstream 56bp 31681 chr1 147084979 147084979 1 + C T STAD 147084980 + 147084960 147085000 41 GAGATCCTGGGACTCCAAACGATGACTCTGACATTAAAGGT GAGATCCTGGGACTCCAAATGATGACTCTGACATTAAAGGT < 41bp 0.541058734909539 0.744889409544554 NA NA prediction 0.407661349270029 Functional Gain - BCL9 ENSG00000116128 CDS Human protein_coding chr1:147084980 chr1:147084979 synonymous SNV . 0 20 hm7G_associated_SNPs_34449 0 0 1 0 1 BCL9 chr1:147084998 5'GT 147084998 Upstream 20bp 31682 chr2 242690756 242690756 1 + G A LUAD 242690757 + 242690737 242690777 41 GGAGCACGCGCTGGGCTCCGGCCTGGTGACCGATGGGACCA GGAGCACGCGCTGGGCTCCAGCCTGGTGACCGATGGGACCA < 41bp 0.576065466616168 0.779895310306502 NA NA prediction 0.407659687380667 Functional Gain - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242690757 chr2:242690756 nonsynonymous SNV 0.233 1 20 hm7G_associated_SNPs_34450 0 0 1 0 2 D2HGDH chr2:242690661 3'AG 242690661 Downstream 96bp 31683 chr2 242690756 242690756 1 + G A LUAD 242690757 + 242690737 242690777 41 GGAGCACGCGCTGGGCTCCGGCCTGGTGACCGATGGGACCA GGAGCACGCGCTGGGCTCCAGCCTGGTGACCGATGGGACCA < 41bp 0.576065466616168 0.779895310306502 NA NA prediction 0.407659687380667 Functional Gain - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242690757 chr2:242690756 nonsynonymous SNV 0.233 1 20 hm7G_associated_SNPs_34450 0 0 1 0 2 D2HGDH chr2:242690803 5'GT 242690803 Upstream 48bp 31684 chr1 41285123 41285123 1 + C T UCEC 41285124 + 41285104 41285144 41 CCGACTTCTCCTCCTACGCCGACTCGCTCTGGTGGGGGACG CCGACTTCTCCTCCTACGCTGACTCGCTCTGGTGGGGGACG < 41bp 0.542695515620677 0.746524421458586 NA NA prediction 0.407657811675818 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41285124 chr1:41285123 synonymous SNV . 0 20 hm7G_associated_SNPs_34452 0 0 0 0 1 KCNQ4 chr1:41285144 5'GT 41285144 Upstream 22bp 31685 chr1 233498021 233498021 1 + C T UCEC 233498022 + 233498002 233498042 41 AAAGCTCAAAGATGGACATCGAATCAGTTTACCTTCAGGTA AAAGCTCAAAGATGGACATTGAATCAGTTTACCTTCAGGTA < 41bp 0.508435354097518 0.71226197859345 NA NA prediction 0.407653248991865 Functional Gain - MAP3K21 ENSG00000143674 CDS Human protein_coding chr1:233498022 chr1:233498021 stopgain 0.751 1 20 hm7G_associated_SNPs_34453 0 0 1 0 1 MAP3K21 chr1:233498039 5'GT 233498039 Upstream 19bp 31686 chr1 15944204 15944204 1 + C T CESC 15944205 + 15944185 15944225 41 GTGTGCGGAGGGACCTCTCCGAGGTGACCTTTTCCCTCCAG GTGTGCGGAGGGACCTCTCTGAGGTGACCTTTTCCCTCCAG < 41bp 0.5028617358943 0.706682814421611 NA NA prediction 0.407642157054622 Functional Gain - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15944205 chr1:15944204 synonymous SNV . 0 20 hm7G_associated_SNPs_34456 0 0 1 0 1 DDI2 chr1:15944303 5'GT 15944303 Upstream 100bp 31687 chr19 16338471 16338471 1 + C T SKCM 16338472 + 16338452 16338492 41 TCCCACCCGACGGCGAGTTCGAGCTCATGTCCTACCGTCTC TCCCACCCGACGGCGAGTTTGAGCTCATGTCCTACCGTCTC < 41bp 0.525562835918127 0.729382463706192 NA NA prediction 0.407639255576129 Functional Gain - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16338472 chr19:16338471 synonymous SNV . 0 20 hm7G_associated_SNPs_34459 0 0 1 0 1 AP1M1 chr19:16338501 5'GT 16338501 Upstream 31bp 31688 chr15 81225606 81225606 1 + C T UCEC 81225607 + 81225587 81225627 41 TTACTTCCAGAGTGTTCTTCGGAGAGCCTGGGCCCTGGTTC TTACTTCCAGAGTGTTCTTTGGAGAGCCTGGGCCCTGGTTC < 41bp 0.549073648510657 0.752892502576726 NA NA prediction 0.407637708132138 Functional Gain - CEMIP ENSG00000103888 CDS Human protein_coding chr15:81225607 chr15:81225606 synonymous SNV . 0 20 hm7G_associated_SNPs_34460 0 0 1 0 1 CEMIP chr15:81225586 3'AG 81225586 Downstream 21bp 31689 chr12 56631453 56631453 1 + G A SKCM 56631454 + 56631434 56631474 41 GGGGCTGCTGCTGGGGGGCGGCCTCATGCTTGCCATAACCC GGGGCTGCTGCTGGGGGGCAGCCTCATGCTTGCCATAACCC < 41bp 0.570012684709247 0.773831037332735 NA NA prediction 0.407636705246976 Functional Gain - SLC39A5 ENSG00000139540 CDS Human protein_coding chr12:56631454 chr12:56631453 nonsynonymous SNV 0.964 0 20 hm7G_associated_SNPs_34461 0 0 1 0 1 SLC39A5 chr12:56631372 3'AG 56631372 Downstream 82bp 31690 chr1 180240545 180240545 1 + G A UCEC 180240546 + 180240526 180240566 41 GCTGGAGCTAAGCGGCCCCGGACCACCATCACAGCCAAGCA GCTGGAGCTAAGCGGCCCCAGACCACCATCACAGCCAAGCA < 41bp 0.513648656500174 0.717466601936145 NA NA prediction 0.407635890871941 Functional Gain - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180240546 chr1:180240545 nonsynonymous SNV 0.992 5 20 hm7G_associated_SNPs_34462 0 0 0 0 1 LHX4 chr1:180240515 3'AG 180240515 Downstream 31bp 31691 chr8 38947656 38947656 1 + G T COAD 38947657 + 38947637 38947677 41 ATTTTTATCTTCATCAAGAGGGATCAACTGTGGAGAAGCTA ATTTTTATCTTCATCAAGATGGATCAACTGTGGAGAAGCTA < 41bp 0.696623461676825 0.900432006586087 NA NA prediction 0.407617089818524 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38947657 chr8:38947656 nonsynonymous SNV 0.903 5 20 hm7G_associated_SNPs_34464 0 0 1 4 2 ADAM9 chr8:38947566 3'AG 38947566 Downstream 91bp 31692 chr8 38947656 38947656 1 + G T COAD 38947657 + 38947637 38947677 41 ATTTTTATCTTCATCAAGAGGGATCAACTGTGGAGAAGCTA ATTTTTATCTTCATCAAGATGGATCAACTGTGGAGAAGCTA < 41bp 0.696623461676825 0.900432006586087 NA NA prediction 0.407617089818524 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38947657 chr8:38947656 nonsynonymous SNV 0.903 5 20 hm7G_associated_SNPs_34464 0 0 1 4 2 ADAM9 chr8:38947707 5'GT 38947707 Upstream 52bp 31693 chr3 12845014 12845014 1 + G A COAD 12845015 + 12844995 12845035 41 CCACCAGCGACCTGATGTCGGAGTTGCAGAAGGACTCCATC CCACCAGCGACCTGATGTCAGAGTTGCAGAAGGACTCCATC < 41bp 0.541865451401498 0.745665739557528 NA NA prediction 0.40760057631206 Functional Gain - CAND2 ENSG00000144712 CDS Human protein_coding chr3:12845015 chr3:12845014 synonymous SNV . 0 20 hm7G_associated_SNPs_34470 0 0 1 0 1 CAND2 chr3:12844987 3'AG 12844987 Downstream 28bp 31694 chr1 153735726 153735726 1 + C T UCEC 153735727 + 153735707 153735747 41 AGGAAAGAAGAGGGAGTTTCGCTTCCACCCTATCAAGGAGA AGGAAAGAAGAGGGAGTTTTGCTTCCACCCTATCAAGGAGA < 41bp 0.488427519237767 0.703799393502424 NA NA prediction 0.407598787004847 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153735727 chr1:153735726 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34472 0 0 1 0 1 INTS3 chr1:153735709 3'AG 153735709 Downstream 18bp 31695 chr19 17831764 17831764 1 + C T UCEC 17831765 + 17831745 17831785 41 GCATCCGGTCTTGGGATGTCGATCCTGGCGTCTGCAACCTT GCATCCGGTCTTGGGATGTTGATCCTGGCGTCTGCAACCTT < 41bp 0.538513518928503 0.742311123648272 NA NA prediction 0.407595209439539 Functional Gain - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17831765 chr19:17831764 stopgain . 0 20 hm7G_associated_SNPs_34473 0 0 1 0 2 MAP1S chr19:17831745 3'AG 17831745 Downstream 20bp 31696 chr19 17831764 17831764 1 + C T UCEC 17831765 + 17831745 17831785 41 GCATCCGGTCTTGGGATGTCGATCCTGGCGTCTGCAACCTT GCATCCGGTCTTGGGATGTTGATCCTGGCGTCTGCAACCTT < 41bp 0.538513518928503 0.742311123648272 NA NA prediction 0.407595209439539 Functional Gain - MAP1S ENSG00000130479 CDS Human protein_coding chr19:17831765 chr19:17831764 stopgain . 0 20 hm7G_associated_SNPs_34473 0 0 1 0 2 MAP1S chr19:17831846 5'GT 17831846 Upstream 83bp 31697 chr17 75199668 75199668 1 + C T rs140813836 75199669 + 75199649 75199689 41 CAGATGGGCGGCCCCTCTACGTGCTCAGGCTGGGGCAGATG CAGATGGGCGGCCCCTCTATGTGCTCAGGCTGGGGCAGATG < 41bp 0.50187195776435 0.705668620942976 NA NA prediction 0.407593326357253 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75199669 chr17:75199668 synonymous SNV . 0 20 hm7G_associated_SNPs_34475 0 0 1 0 2 SEC14L1 chr17:75199652 3'AG 75199652 Downstream 17bp 31698 chr17 75199668 75199668 1 + C T rs140813836 75199669 + 75199649 75199689 41 CAGATGGGCGGCCCCTCTACGTGCTCAGGCTGGGGCAGATG CAGATGGGCGGCCCCTCTATGTGCTCAGGCTGGGGCAGATG < 41bp 0.50187195776435 0.705668620942976 NA NA prediction 0.407593326357253 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75199669 chr17:75199668 synonymous SNV . 0 20 hm7G_associated_SNPs_34475 0 0 1 0 2 SEC14L1 chr17:75199740 5'GT 75199740 Upstream 73bp 31699 chr1 46871062 46871062 1 + G A SKCM 46871063 + 46871043 46871083 41 GGGCCAGGACTCCACGCTGGGCTTGAGCCTGAATGAAGGGG GGGCCAGGACTCCACGCTGAGCTTGAGCCTGAATGAAGGGG < 41bp 0.596100857924411 0.799894846602083 NA NA prediction 0.407587977355345 Functional Gain - FAAH ENSG00000117480 CDS Human protein_coding chr1:46871063 chr1:46871062 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_34477 0 0 0 0 1 FAAH chr1:46871044 3'AG 46871044 Downstream 19bp 31700 chr19 50794261 50794261 1 + G A rs199915414 50794262 + 50794242 50794282 41 GGCTCAGATGGCCTCTGCCGGCCAGGGCAAGGAGGAGGCGG GGCTCAGATGGCCTCTGCCAGCCAGGGCAAGGAGGAGGCGG < 41bp 0.551841987999542 0.755635730722113 NA NA prediction 0.407587485445142 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50794262 chr19:50794261 nonsynonymous SNV 0.365 0 20 hm7G_associated_SNPs_34478 0 0 0 0 1 MYH14 chr19:50794305 5'GT 50794305 Upstream 45bp 31701 chr18 74631933 74631933 1 + C T HNSC 74631934 + 74631914 74631954 41 GAGCTGAGGGACAAGCAGGCGGAGCTGCAGGACGAGCCCAA GAGCTGAGGGACAAGCAGGTGGAGCTGCAGGACGAGCCCAA < 41bp 0.56338480689735 0.767171000354224 NA NA prediction 0.407572386913748 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74631934 chr18:74631933 nonsynonymous SNV 0.564 1 20 hm7G_associated_SNPs_34480 0 0 1 0 1 ZNF236 chr18:74632014 5'GT 74632014 Upstream 82bp 31702 chr18 2762184 2762184 1 + C T SKCM 2762185 + 2762165 2762205 41 ACCAGCTGTTTCAAATGTTCGCTCAGTTGCCAGTAGGACCT ACCAGCTGTTTCAAATGTTTGCTCAGTTGCCAGTAGGACCT < 41bp 0.504241866125987 0.708027822836256 NA NA prediction 0.407571913420538 Functional Gain - SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2762185 chr18:2762184 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_34481 0 0 1 0 2 SMCHD1 chr18:2762103 3'AG 2762103 Downstream 82bp 31703 chr18 2762184 2762184 1 + C T SKCM 2762185 + 2762165 2762205 41 ACCAGCTGTTTCAAATGTTCGCTCAGTTGCCAGTAGGACCT ACCAGCTGTTTCAAATGTTTGCTCAGTTGCCAGTAGGACCT < 41bp 0.504241866125987 0.708027822836256 NA NA prediction 0.407571913420538 Functional Gain - SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2762185 chr18:2762184 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_34481 0 0 1 0 2 SMCHD1 chr18:2762234 5'GT 2762234 Upstream 51bp 31704 chr12 49942913 49942913 1 + G A SARC 49942914 + 49942894 49942934 41 GCAACGTGTCCGCCAACACGGACACCGAGAAGATCTTCTCC GCAACGTGTCCGCCAACACAGACACCGAGAAGATCTTCTCC < 41bp 0.553278928265345 0.757064235191906 NA NA prediction 0.407570613853123 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49942914 chr12:49942913 synonymous SNV . 0 20 hm7G_associated_SNPs_34482 0 0 0 0 1 KCNH3 chr12:49942956 5'GT 49942956 Upstream 44bp 31705 chr7 31011680 31011680 1 + C T UCEC 31011681 + 31011661 31011701 41 ATGCTGCCCTTTTCCACAGCGACGACACTGACCACTGCAGC ATGCTGCCCTTTTCCACAGTGACGACACTGACCACTGCAGC < 41bp 0.542789774498493 0.746571396947172 NA NA prediction 0.407563244897357 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31011681 chr7:31011680 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_34484 0 0 0 0 1 GHRHR chr7:31011710 5'GT 31011710 Upstream 31bp 31706 chr19 49913126 49913126 1 + G A LUSC 49913127 + 49913107 49913147 41 CATCTGAAGCCCCAGCTGGGGGACAGGTGAGCACAGGAAAA CATCTGAAGCCCCAGCTGGAGGACAGGTGAGCACAGGAAAA < 41bp 0.501606150476626 0.70538750408733 NA NA prediction 0.407562707221408 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49913127 chr19:49913126 synonymous SNV . 0 20 hm7G_associated_SNPs_34485 0 0 0 0 1 CCDC155 chr19:49913132 5'GT 49913132 Upstream 7bp 31707 chr8 145095281 145095281 1 + G A LUAD 145095282 + 145095262 145095302 41 GTCCTGCCAGAGGCCCCAAGGCTGCGGCTGGCTGAGCCACT GTCCTGCCAGAGGCCCCAAAGCTGCGGCTGGCTGAGCCACT < 41bp 0.577951435816568 0.781730307763245 NA NA prediction 0.407557743893354 Functional Gain - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145095282 chr8:145095281 nonsynonymous SNV 0.014 3 20 hm7G_associated_SNPs_34488 0 0 0 0 1 SPATC1 chr8:145095364 5'GT 145095364 Upstream 84bp 31708 chr5 178987118 178987118 1 + G T PAAD 178987119 + 178987099 178987139 41 CCAGTCGGCTCTGAGCCTGGGCCGCAGCCTGGATGCGGACC CCAGTCGGCTCTGAGCCTGTGCCGCAGCCTGGATGCGGACC < 41bp 0.706707572422349 0.910482492666217 NA NA prediction 0.407549840487736 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178987119 chr5:178987118 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34491 0 0 1 0 2 RUFY1 chr5:178987026 3'AG 178987026 Downstream 93bp 31709 chr5 178987118 178987118 1 + G T PAAD 178987119 + 178987099 178987139 41 CCAGTCGGCTCTGAGCCTGGGCCGCAGCCTGGATGCGGACC CCAGTCGGCTCTGAGCCTGTGCCGCAGCCTGGATGCGGACC < 41bp 0.706707572422349 0.910482492666217 NA NA prediction 0.407549840487736 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178987119 chr5:178987118 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34491 0 0 1 0 2 RUFY1 chr5:178987199 5'GT 178987199 Upstream 82bp 31710 chr9 139973510 139973510 1 + C T UCEC 139973511 + 139973491 139973531 41 GGGGAGTGGAGTTTGTGCACGTGTACTGTGTGGACAACATC GGGGAGTGGAGTTTGTGCATGTGTACTGTGTGGACAACATC < 41bp 0.516592540365932 0.720366912528662 NA NA prediction 0.407548744325459 Functional Gain - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139973511 chr9:139973510 synonymous SNV . 0 20 hm7G_associated_SNPs_34492 0 0 1 0 2 UAP1L1 chr9:139973428 3'AG 139973428 Downstream 83bp 31711 chr9 139973510 139973510 1 + C T UCEC 139973511 + 139973491 139973531 41 GGGGAGTGGAGTTTGTGCACGTGTACTGTGTGGACAACATC GGGGAGTGGAGTTTGTGCATGTGTACTGTGTGGACAACATC < 41bp 0.516592540365932 0.720366912528662 NA NA prediction 0.407548744325459 Functional Gain - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139973511 chr9:139973510 synonymous SNV . 0 20 hm7G_associated_SNPs_34492 0 0 1 0 2 UAP1L1 chr9:139973600 5'GT 139973600 Upstream 91bp 31712 chrX 2942185 2942185 1 + G A SKCM 2942186 + 2942166 2942206 41 CAGCTGGGTGGCTGGAACGGGATCTACAAAGGTGATTGTGT CAGCTGGGTGGCTGGAACGAGATCTACAAAGGTGATTGTGT < 41bp 0.506254945727283 0.710029018870372 NA NA prediction 0.407548146286177 Functional Gain - ARSH ENSG00000205667 CDS Human protein_coding chrX:2942186 chrX:2942185 nonsynonymous SNV 0.010 4 20 hm7G_associated_SNPs_34493 0 0 0 0 1 ARSH chrX:2942196 5'GT 2942196 Upstream 12bp 31713 chr2 135621176 135621176 1 + C T UCEC 135621177 + 135621157 135621197 41 AACGAGTGGGACCTGAACGCGCAGGAGCTCTTTCCTGTCTA AACGAGTGGGACCTGAACGTGCAGGAGCTCTTTCCTGTCTA < 41bp 0.52661392263587 0.730387955717937 NA NA prediction 0.407548066164135 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135621177 chr2:135621176 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_34494 0 0 0 0 1 ACMSD chr2:135621201 5'GT 135621201 Upstream 26bp 31714 chr19 49636391 49636391 1 + C T BLCA 49636392 + 49636372 49636412 41 GAGTTAGCTAGCAAGGAGTCGTTGTATCGGCAGGTGGGGGC GAGTTAGCTAGCAAGGAGTTGTTGTATCGGCAGGTGGGGGC < 41bp 0.518974562478404 0.722746353243408 NA NA prediction 0.407543581530008 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49636392 chr19:49636391 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_34495 0 0 0 0 1 PPFIA3 chr19:49636404 5'GT 49636404 Upstream 14bp 31715 chr11 60785798 60785798 1 + C T SKCM 60785799 + 60785779 60785819 41 ACAGCTCCAGCACCTCATCCGGGGAGTGGTACCAGAACTTC ACAGCTCCAGCACCTCATCTGGGGAGTGGTACCAGAACTTC < 41bp 0.513700998793139 0.717471907146059 NA NA prediction 0.40754181670584 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60785799 chr11:60785798 synonymous SNV . 0 20 hm7G_associated_SNPs_34496 0 0 0 0 3 CD6 chr11:60785761 3'AG 60785761 Downstream 38bp 31716 chr11 60785798 60785798 1 + C T SKCM 60785799 + 60785779 60785819 41 ACAGCTCCAGCACCTCATCCGGGGAGTGGTACCAGAACTTC ACAGCTCCAGCACCTCATCTGGGGAGTGGTACCAGAACTTC < 41bp 0.513700998793139 0.717471907146059 NA NA prediction 0.40754181670584 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60785799 chr11:60785798 synonymous SNV . 0 20 hm7G_associated_SNPs_34496 0 0 0 0 3 CD6 chr11:60785764 3'AG 60785764 Downstream 35bp 31717 chr11 60785798 60785798 1 + C T SKCM 60785799 + 60785779 60785819 41 ACAGCTCCAGCACCTCATCCGGGGAGTGGTACCAGAACTTC ACAGCTCCAGCACCTCATCTGGGGAGTGGTACCAGAACTTC < 41bp 0.513700998793139 0.717471907146059 NA NA prediction 0.40754181670584 Functional Gain - CD6 ENSG00000013725 CDS Human protein_coding chr11:60785799 chr11:60785798 synonymous SNV . 0 20 hm7G_associated_SNPs_34496 0 0 0 0 3 CD6 chr11:60785865 5'GT 60785865 Upstream 68bp 31718 chrX 48417690 48417690 1 + C T CESC 48417691 + 48417671 48417711 41 CTCCCGACCCGAGGAGTTGCGCCTGCGGATCTATCATGGCG CTCCCGACCCGAGGAGTTGTGCCTGCGGATCTATCATGGCG < 41bp 0.499235181333261 0.703768588313092 NA NA prediction 0.407537176626185 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417691 chrX:48417690 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34497 0 0 0 0 1 TBC1D25 chrX:48417734 5'GT 48417734 Upstream 45bp 31719 chr12 57969018 57969018 1 + G T LUAD 57969019 + 57968999 57969039 41 CGCAAGATGGAAGTGACCGGGCGGGAGCTCTCATCCTGCCA CGCAAGATGGAAGTGACCGTGCGGGAGCTCTCATCCTGCCA < 41bp 0.34436618689897 0.703767721330221 NA NA prediction 0.407535442660441 Functional Gain - KIF5A ENSG00000155980 CDS Human protein_coding chr12:57969019 chr12:57969018 nonsynonymous SNV 0.928 2 20 hm7G_associated_SNPs_34498 0 0 1 0 1 KIF5A chr12:57969055 5'GT 57969055 Upstream 38bp 31720 chr11 44105115 44105115 1 + C T UCEC 44105116 + 44105096 44105136 41 CTTCTCAGACCAGGTCCACCGGCTTTGCCTGGGTGAGCAGC CTTCTCAGACCAGGTCCACTGGCTTTGCCTGGGTGAGCAGC < 41bp 0.497495819281009 0.703767426242534 NA NA prediction 0.407534852485068 Functional Gain - ACCS ENSG00000110455 CDS Human protein_coding chr11:44105116 chr11:44105115 nonsynonymous SNV 0.701 1 20 hm7G_associated_SNPs_34499 0 0 0 0 1 ACCS chr11:44105127 5'GT 44105127 Upstream 13bp 31721 chr11 65113788 65113788 1 + C T BRCA 65113789 + 65113769 65113809 41 CATACCGCTGGCAGTGCATCGAGTGCAAATGTTGCAATATC CATACCGCTGGCAGTGCATTGAGTGCAAATGTTGCAATATC < 41bp 0.517010824321969 0.720777951042254 NA NA prediction 0.407534253440569 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113789 chr11:65113788 synonymous SNV . 0 20 hm7G_associated_SNPs_34500 0 0 1 0 2 DPF2 chr11:65113718 3'AG 65113718 Downstream 71bp 31722 chr11 65113788 65113788 1 + C T BRCA 65113789 + 65113769 65113809 41 CATACCGCTGGCAGTGCATCGAGTGCAAATGTTGCAATATC CATACCGCTGGCAGTGCATTGAGTGCAAATGTTGCAATATC < 41bp 0.517010824321969 0.720777951042254 NA NA prediction 0.407534253440569 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113789 chr11:65113788 synonymous SNV . 0 20 hm7G_associated_SNPs_34500 0 0 1 0 2 DPF2 chr11:65113830 5'GT 65113830 Upstream 43bp 31723 chr10 134158014 134158014 1 + C T UCEC 134158015 + 134157995 134158035 41 ACTGCAGGGAGCGTAACCACGCTGAAAGCACTGAACCTAAG ACTGCAGGGAGCGTAACCATGCTGAAAGCACTGAACCTAAG < 41bp 0.51679341017706 0.72055769230471 NA NA prediction 0.407528564255301 Functional Gain - LRRC27 ENSG00000148814 CDS Human protein_coding chr10:134158015 chr10:134158014 nonsynonymous SNV 0.003 4 20 hm7G_associated_SNPs_34502 0 0 1 0 1 LRRC27 chr10:134158002 3'AG 134158002 Downstream 13bp 31724 chr11 2423920 2423920 1 + G A rs200277918 2423921 + 2423901 2423941 41 TGGAGGGCGAACACGGGACGGAGTATGACACGCTGCCTTCC TGGAGGGCGAACACGGGACAGAGTATGACACGCTGCCTTCC < 41bp 0.530597532670861 0.734361492457789 NA NA prediction 0.407527919573855 Functional Gain - TSSC4 ENSG00000184281 CDS Human protein_coding chr11:2423921 chr11:2423920 synonymous SNV . 0 20 hm7G_associated_SNPs_34503 0 0 1 0 1 TSSC4 chr11:2423841 3'AG 2423841 Downstream 80bp 31725 chr18 12028930 12028930 1 + G A SKCM 12028931 + 12028911 12028951 41 CAGTTTGGCCTGCACTGCTGGGATCTGGCGGCTGCCACAGT CAGTTTGGCCTGCACTGCTAGGATCTGGCGGCTGCCACAGT < 41bp 0.556209229648036 0.759973142979634 NA NA prediction 0.407527826663195 Functional Gain - IMPA2 ENSG00000141401 CDS Human protein_coding chr18:12028931 chr18:12028930 stopgain 1.000 1 20 hm7G_associated_SNPs_34505 0 0 0 0 1 IMPA2 chr18:12028992 5'GT 12028992 Upstream 63bp 31726 chr10 71683572 71683572 1 + C T PAAD 71683573 + 71683553 71683593 41 CCCAGGGAGAAGCAGGTGTCGATGGCCAGGTTGGCCCCCCA CCCAGGGAGAAGCAGGTGTTGATGGCCAGGTTGGCCCCCCA < 41bp 0.511924564756141 0.715688390132253 NA NA prediction 0.407527650752224 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71683573 chr10:71683572 synonymous SNV . 0 20 hm7G_associated_SNPs_34506 0 0 0 0 2 COL13A1 chr10:71683558 3'AG 71683558 Downstream 15bp 31727 chr10 71683572 71683572 1 + C T PAAD 71683573 + 71683553 71683593 41 CCCAGGGAGAAGCAGGTGTCGATGGCCAGGTTGGCCCCCCA CCCAGGGAGAAGCAGGTGTTGATGGCCAGGTTGGCCCCCCA < 41bp 0.511924564756141 0.715688390132253 NA NA prediction 0.407527650752224 Functional Gain - COL13A1 ENSG00000197467 CDS Human protein_coding chr10:71683573 chr10:71683572 synonymous SNV . 0 20 hm7G_associated_SNPs_34506 0 0 0 0 2 COL13A1 chr10:71683611 5'GT 71683611 Upstream 40bp 31728 chr2 101598750 101598750 1 + C T UCEC 101598751 + 101598731 101598771 41 CCAGCTAGAGCAGCGGACGCGGATCCTGCAGGCCAATATCC CCAGCTAGAGCAGCGGACGTGGATCCTGCAGGCCAATATCC < 41bp 0.558738102734872 0.762500123430314 NA NA prediction 0.407524041390885 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598751 chr2:101598750 nonsynonymous SNV 0.946 4 20 hm7G_associated_SNPs_34507 0 0 1 0 2 NPAS2 chr2:101598693 3'AG 101598693 Downstream 58bp 31729 chr2 101598750 101598750 1 + C T UCEC 101598751 + 101598731 101598771 41 CCAGCTAGAGCAGCGGACGCGGATCCTGCAGGCCAATATCC CCAGCTAGAGCAGCGGACGTGGATCCTGCAGGCCAATATCC < 41bp 0.558738102734872 0.762500123430314 NA NA prediction 0.407524041390885 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598751 chr2:101598750 nonsynonymous SNV 0.946 4 20 hm7G_associated_SNPs_34507 0 0 1 0 2 NPAS2 chr2:101598839 5'GT 101598839 Upstream 90bp 31730 chr16 55690810 55690810 1 + C T STAD 55690811 + 55690791 55690831 41 AGATCGACTTCCTGCTGTCCGTAGTCGGCTTCGCAGTGGAC AGATCGACTTCCTGCTGTCTGTAGTCGGCTTCGCAGTGGAC < 41bp 0.527245860108371 0.731007269566438 NA NA prediction 0.407522818916135 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55690811 chr16:55690810 synonymous SNV . 0 20 hm7G_associated_SNPs_34508 0 0 0 0 1 SLC6A2 chr16:55690880 5'GT 55690880 Upstream 71bp 31731 chr15 39885831 39885831 1 + C T COAD 39885832 + 39885812 39885852 41 AGGGCCTGGCGAGCACCTGCGGAACGCCCTGTGGCACACAG AGGGCCTGGCGAGCACCTGTGGAACGCCCTGTGGCACACAG < 41bp 0.523834174555505 0.727594867219918 NA NA prediction 0.407521385328826 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39885832 chr15:39885831 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34509 0 0 1 0 1 THBS1 chr15:39885869 5'GT 39885869 Upstream 39bp 31732 chr1 11591038 11591038 1 + C T rs74873941 11591039 + 11591019 11591059 41 GTCACCTCTGCAAGGCCATCGCAGCCAACTCCGAGCTGGTG GTCACCTCTGCAAGGCCATTGCAGCCAACTCCGAGCTGGTG < 41bp 0.533427440831935 0.737186411563291 NA NA prediction 0.407517941462712 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11591039 chr1:11591038 synonymous SNV . 0 20 hm7G_associated_SNPs_34510 0 0 0 0 1 DISP3 chr1:11591090 5'GT 11591090 Upstream 53bp 31733 chr9 139250815 139250815 1 + C T BLCA 139250816 + 139250796 139250836 41 CAGCCCTCGATGACGGCCTCGCCCCAGACCGAGGAATTCTT CAGCCCTCGATGACGGCCTTGCCCCAGACCGAGGAATTCTT < 41bp 0.494432922960211 0.703757384258106 NA NA prediction 0.407514768516212 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139250816 chr9:139250815 nonsynonymous SNV 0.042 4 20 hm7G_associated_SNPs_34512 0 0 0 0 1 GPSM1 chr9:139250794 3'AG 139250794 Downstream 22bp 31734 chr1 43772651 43772651 1 + C T SKCM 43772652 + 43772632 43772672 41 CCTGGGCAGCGCCTTCTTTCGGCTCATCGTGCGGGGTCAGA CCTGGGCAGCGCCTTCTTTTGGCTCATCGTGCGGGGTCAGA < 41bp 0.537371737257594 0.741125552910419 NA NA prediction 0.407507631305651 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43772652 chr1:43772651 nonsynonymous SNV 0.870 3 20 hm7G_associated_SNPs_34516 0 0 0 0 1 TIE1 chr1:43772666 5'GT 43772666 Upstream 16bp 31735 chr6 26091188 26091188 1 + C T SKCM 26091189 + 26091169 26091209 41 GTTCTATGATCATGAGAGTCGCCGTGTGGAGCCCCGAACTC GTTCTATGATCATGAGAGTTGCCGTGTGGAGCCCCGAACTC < 41bp 0.516752806450479 0.720506505881064 NA NA prediction 0.407507398861171 Functional Gain - HFE ENSG00000010704 CDS Human protein_coding chr6:26091189 chr6:26091188 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_34517 0 0 0 0 1 HFE chr6:26091138 3'AG 26091138 Downstream 51bp 31736 chr21 45538685 45538685 1 + C T rs150440839 45538686 + 45538666 45538706 41 TCAGTGGCCATCAATAGCTCGGGGGACTGGATTGCTTTTGG TCAGTGGCCATCAATAGCTTGGGGGACTGGATTGCTTTTGG < 41bp 0.521831216028543 0.725584879932108 NA NA prediction 0.40750732780713 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45538686 chr21:45538685 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_34518 0 0 1 0 2 PWP2 chr21:45538644 3'AG 45538644 Downstream 42bp 31737 chr21 45538685 45538685 1 + C T rs150440839 45538686 + 45538666 45538706 41 TCAGTGGCCATCAATAGCTCGGGGGACTGGATTGCTTTTGG TCAGTGGCCATCAATAGCTTGGGGGACTGGATTGCTTTTGG < 41bp 0.521831216028543 0.725584879932108 NA NA prediction 0.40750732780713 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45538686 chr21:45538685 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_34518 0 0 1 0 2 PWP2 chr21:45538714 5'GT 45538714 Upstream 30bp 31738 chr16 81730263 81730263 1 + C T SKCM 81730264 + 81730244 81730284 41 ACGATGACGGGGAGCTGTTCGCCAGCATGGTACGCAGTGGG ACGATGACGGGGAGCTGTTTGCCAGCATGGTACGCAGTGGG < 41bp 0.537133173266979 0.740884013181042 NA NA prediction 0.407501679828126 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81730264 chr16:81730263 synonymous SNV . 0 20 hm7G_associated_SNPs_34523 0 0 1 0 2 CMIP chr16:81730165 3'AG 81730165 Downstream 99bp 31739 chr16 81730263 81730263 1 + C T SKCM 81730264 + 81730244 81730284 41 ACGATGACGGGGAGCTGTTCGCCAGCATGGTACGCAGTGGG ACGATGACGGGGAGCTGTTTGCCAGCATGGTACGCAGTGGG < 41bp 0.537133173266979 0.740884013181042 NA NA prediction 0.407501679828126 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81730264 chr16:81730263 synonymous SNV . 0 20 hm7G_associated_SNPs_34523 0 0 1 0 2 CMIP chr16:81730272 5'GT 81730272 Upstream 10bp 31740 chr20 30617620 30617620 1 + C T PRAD 30617621 + 30617601 30617641 41 GCTGAAGCTCTACGGAGACCGGCGCAAGTTCCTCCTCCTTG GCTGAAGCTCTACGGAGACTGGCGCAAGTTCCTCCTCCTTG < 41bp 0.521472570434722 0.725223298576198 NA NA prediction 0.407501456282951 Functional Gain - CCM2L ENSG00000101331 CDS Human protein_coding chr20:30617621 chr20:30617620 nonsynonymous SNV 0.977 2 20 hm7G_associated_SNPs_34524 0 0 0 0 1 CCM2L chr20:30617641 5'GT 30617641 Upstream 22bp 31741 chrX 117764384 117764384 1 + C T UCEC 117764385 + 117764365 117764405 41 TAGTGTATCCCAGTATAACCGCCTGGATCAGTATGAAATCA TAGTGTATCCCAGTATAACTGCCTGGATCAGTATGAAATCA < 41bp 0.506319606521046 0.710069414062942 NA NA prediction 0.407499615083792 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117764385 chrX:117764384 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_34525 0 0 1 0 2 DOCK11 chrX:117764342 3'AG 117764342 Downstream 43bp 31742 chrX 117764384 117764384 1 + C T UCEC 117764385 + 117764365 117764405 41 TAGTGTATCCCAGTATAACCGCCTGGATCAGTATGAAATCA TAGTGTATCCCAGTATAACTGCCTGGATCAGTATGAAATCA < 41bp 0.506319606521046 0.710069414062942 NA NA prediction 0.407499615083792 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117764385 chrX:117764384 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_34525 0 0 1 0 2 DOCK11 chrX:117764453 5'GT 117764453 Upstream 70bp 31743 chr1 150471113 150471113 1 + C T COAD 150471114 + 150471094 150471134 41 GGTGCTTCCAGCAGGATGACGCTCACATCTTCTGTACAACA GGTGCTTCCAGCAGGATGATGCTCACATCTTCTGTACAACA < 41bp 0.490210022414228 0.703748920101299 NA NA prediction 0.407497840202597 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471114 chr1:150471113 synonymous SNV . 0 20 hm7G_associated_SNPs_34526 0 0 1 0 1 TARS2 chr1:150471140 5'GT 150471140 Upstream 28bp 31744 chr6 28327682 28327682 1 + C T UCEC 28327683 + 28327663 28327703 41 GAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAGAGCG GAATCTGCAGAGCTGGGTGTGGGAGCAGCATCCAGAGAGCG < 41bp 0.546819399384869 0.750567658407769 NA NA prediction 0.407496518045799 Functional Gain - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28327683 chr6:28327682 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_34527 0 0 0 0 1 ZKSCAN3 chr6:28327765 5'GT 28327765 Upstream 84bp 31745 chr2 99155410 99155410 1 + C T LUSC 99155411 + 99155391 99155431 41 TAGGAATCCGATCCAAATACGCTTCATTGCGAAAGGACACT TAGGAATCCGATCCAAATATGCTTCATTGCGAAAGGACACT < 41bp 0.549512460122611 0.753259038097495 NA NA prediction 0.407493155949767 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99155411 chr2:99155410 synonymous SNV . 0 20 hm7G_associated_SNPs_34529 0 0 1 0 2 INPP4A chr2:99155354 3'AG 99155354 Downstream 57bp 31746 chr2 99155410 99155410 1 + C T LUSC 99155411 + 99155391 99155431 41 TAGGAATCCGATCCAAATACGCTTCATTGCGAAAGGACACT TAGGAATCCGATCCAAATATGCTTCATTGCGAAAGGACACT < 41bp 0.549512460122611 0.753259038097495 NA NA prediction 0.407493155949767 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99155411 chr2:99155410 synonymous SNV . 0 20 hm7G_associated_SNPs_34529 0 0 1 0 2 INPP4A chr2:99155444 5'GT 99155444 Upstream 35bp 31747 chr3 190321982 190321982 1 + C T CESC 190321983 + 190321963 190322003 41 GTTTGAAGATGAGCCAGCTCGCATCAAGTGCCCACTCTTTG GTTTGAAGATGAGCCAGCTTGCATCAAGTGCCCACTCTTTG < 41bp 0.510497101321996 0.714242974996435 NA NA prediction 0.407491747348877 Functional Gain - IL1RAP ENSG00000196083 CDS Human protein_coding chr3:190321983 chr3:190321982 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_34530 0 0 1 0 1 IL1RAP chr3:190321917 3'AG 190321917 Downstream 66bp 31748 chr12 132511991 132511991 1 + C T DLBC 132511992 + 132511972 132512012 41 GCATTTGTAGTTGGCGTTCCGGGCCGCGTGGCGGTGAATGC GCATTTGTAGTTGGCGTTCTGGGCCGCGTGGCGGTGAATGC < 41bp 0.526709250922705 0.73045146001855 NA NA prediction 0.407484418191689 Functional Gain - EP400 ENSG00000183495 CDS Human protein_coding chr12:132511992 chr12:132511991 nonsynonymous SNV 0.463 5 20 hm7G_associated_SNPs_34531 0 0 1 0 2 EP400 chr12:132511982 3'AG 132511982 Downstream 10bp 31749 chr12 132511991 132511991 1 + C T DLBC 132511992 + 132511972 132512012 41 GCATTTGTAGTTGGCGTTCCGGGCCGCGTGGCGGTGAATGC GCATTTGTAGTTGGCGTTCTGGGCCGCGTGGCGGTGAATGC < 41bp 0.526709250922705 0.73045146001855 NA NA prediction 0.407484418191689 Functional Gain - EP400 ENSG00000183495 CDS Human protein_coding chr12:132511992 chr12:132511991 nonsynonymous SNV 0.463 5 20 hm7G_associated_SNPs_34531 0 0 1 0 2 EP400 chr12:132512076 5'GT 132512076 Upstream 86bp 31750 chr19 49902734 49902734 1 + G A CESC 49902735 + 49902715 49902755 41 AAAAGGAGCAGCAGCATCTGGTGGCTGAGATGGAGACTCTG AAAAGGAGCAGCAGCATCTAGTGGCTGAGATGGAGACTCTG < 41bp 0.564377365014523 0.76811907225951 NA NA prediction 0.407483414489974 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49902735 chr19:49902734 synonymous SNV . 0 20 hm7G_associated_SNPs_34532 0 0 0 0 2 CCDC155 chr19:49902714 3'AG 49902714 Downstream 21bp 31751 chr19 49902734 49902734 1 + G A CESC 49902735 + 49902715 49902755 41 AAAAGGAGCAGCAGCATCTGGTGGCTGAGATGGAGACTCTG AAAAGGAGCAGCAGCATCTAGTGGCTGAGATGGAGACTCTG < 41bp 0.564377365014523 0.76811907225951 NA NA prediction 0.407483414489974 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49902735 chr19:49902734 synonymous SNV . 0 20 hm7G_associated_SNPs_34532 0 0 0 0 2 CCDC155 chr19:49902764 5'GT 49902764 Upstream 31bp 31752 chr16 72133686 72133686 1 + C T ESCA 72133687 + 72133667 72133707 41 TATGACGAGTTCCACAACCCGCTGGCCTACTCCTCCGAGGA TATGACGAGTTCCACAACCTGCTGGCCTACTCCTCCGAGGA < 41bp 0.53850903471625 0.742248507302828 NA NA prediction 0.407478945173156 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72133687 chr16:72133686 nonsynonymous SNV 0.605 2 20 hm7G_associated_SNPs_34533 0 0 1 0 1 DHX38 chr16:72133631 3'AG 72133631 Downstream 56bp 31753 chr8 86042248 86042248 1 + C T COAD 86042249 + 86042229 86042269 41 CATCGAGAAAGAGAACAAGCGCAACAACTTCATCAACTTCT CATCGAGAAAGAGAACAAGTGCAACAACTTCATCAACTTCT < 41bp 0.500181251288242 0.703920493935848 NA NA prediction 0.40747848529521 Functional Gain - LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86042249 chr8:86042248 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_34534 0 0 1 1 2 LRRCC1 chr8:86042154 3'AG 86042154 Downstream 95bp 31754 chr8 86042248 86042248 1 + C T COAD 86042249 + 86042229 86042269 41 CATCGAGAAAGAGAACAAGCGCAACAACTTCATCAACTTCT CATCGAGAAAGAGAACAAGTGCAACAACTTCATCAACTTCT < 41bp 0.500181251288242 0.703920493935848 NA NA prediction 0.40747848529521 Functional Gain - LRRCC1 ENSG00000133739 CDS Human protein_coding chr8:86042249 chr8:86042248 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_34534 0 0 1 1 2 LRRCC1 chr8:86042293 5'GT 86042293 Upstream 46bp 31755 chr3 126736355 126736355 1 + C T UCEC 126736356 + 126736336 126736376 41 CCCACCAGAGCTGGGGGAGCGGCCGGATGAGCTGGGCTTCG CCCACCAGAGCTGGGGGAGTGGCCGGATGAGCTGGGCTTCG < 41bp 0.510667199033688 0.714404540498145 NA NA prediction 0.407474682928913 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126736356 chr3:126736355 nonsynonymous SNV 0.865 3 20 hm7G_associated_SNPs_34537 0 0 1 0 1 PLXNA1 chr3:126736268 3'AG 126736268 Downstream 88bp 31756 chr6 35209353 35209353 1 + C T rs3800381 35209354 + 35209334 35209374 41 CAGGGCAGTCCTGGGGCCTCGAAAGCCATGCTCAGCTGCAA CAGGGCAGTCCTGGGGCCTTGAAAGCCATGCTCAGCTGCAA < 41bp 0.523653155573705 0.727390057116736 NA NA prediction 0.407473803086062 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35209354 chr6:35209353 nonsynonymous SNV 0.597 2 20 hm7G_associated_SNPs_34538 0 0 0 0 2 SCUBE3 chr6:35209320 3'AG 35209320 Downstream 34bp 31757 chr6 35209353 35209353 1 + C T rs3800381 35209354 + 35209334 35209374 41 CAGGGCAGTCCTGGGGCCTCGAAAGCCATGCTCAGCTGCAA CAGGGCAGTCCTGGGGCCTTGAAAGCCATGCTCAGCTGCAA < 41bp 0.523653155573705 0.727390057116736 NA NA prediction 0.407473803086062 Functional Gain - SCUBE3 ENSG00000146197 CDS Human protein_coding chr6:35209354 chr6:35209353 nonsynonymous SNV 0.597 2 20 hm7G_associated_SNPs_34538 0 0 0 0 2 SCUBE3 chr6:35209436 5'GT 35209436 Upstream 84bp 31758 chr20 43804750 43804750 1 + G A PRAD 43804751 + 43804731 43804771 41 GTGCTGTGAAGGCTCTTGCGGGATGGCCTGTTTCGTTCCCC GTGCTGTGAAGGCTCTTGCAGGATGGCCTGTTTCGTTCCCC < 41bp 0.522211576611979 0.725947652662329 NA NA prediction 0.4074721521007 Functional Gain - PI3 ENSG00000124102 CDS Human protein_coding chr20:43804751 chr20:43804750 nonsynonymous SNV 0.007 4 20 hm7G_associated_SNPs_34539 0 0 0 0 1 PI3 chr20:43804777 5'GT 43804777 Upstream 28bp 31759 chr10 134974017 134974017 1 + G A ESCA 134974018 + 134973998 134974038 41 GGATCTTTACGAGGAGGACGGCAAAGACCTGGACTTCTACG GGATCTTTACGAGGAGGACAGCAAAGACCTGGACTTCTACG < 41bp 0.483212935527684 0.70373567590508 NA NA prediction 0.407471351810159 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134974018 chr10:134974017 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_34540 0 0 0 0 1 KNDC1 chr10:134974073 5'GT 134974073 Upstream 57bp 31760 chr4 140375548 140375548 1 + G T COAD 140375549 + 140375529 140375569 41 CCGCACCGAGGCCACGATAGGGGTGGATTTCCGAGAACGAG CCGCACCGAGGCCACGATATGGGTGGATTTCCGAGAACGAG < 41bp 0.692838902779952 0.89657453093895 NA NA prediction 0.407471256317996 Functional Gain - RAB33B ENSG00000172007 CDS Human protein_coding chr4:140375549 chr4:140375548 nonsynonymous SNV 0.829 5 20 hm7G_associated_SNPs_34541 0 0 0 0 1 RAB33B chr4:140375598 5'GT 140375598 Upstream 51bp 31761 chr2 11765377 11765377 1 + C T SKCM 11765378 + 11765358 11765398 41 CCTTTGACTACATCATTCACGACCCGAAGTATGAAGATGCC CCTTTGACTACATCATTCATGACCCGAAGTATGAAGATGCC < 41bp 0.504829007336323 0.708563325164973 NA NA prediction 0.4074686356573 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11765378 chr2:11765377 synonymous SNV . 0 20 hm7G_associated_SNPs_34542 0 0 1 0 2 GREB1 chr2:11765280 3'AG 11765280 Downstream 98bp 31762 chr2 11765377 11765377 1 + C T SKCM 11765378 + 11765358 11765398 41 CCTTTGACTACATCATTCACGACCCGAAGTATGAAGATGCC CCTTTGACTACATCATTCATGACCCGAAGTATGAAGATGCC < 41bp 0.504829007336323 0.708563325164973 NA NA prediction 0.4074686356573 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11765378 chr2:11765377 synonymous SNV . 0 20 hm7G_associated_SNPs_34542 0 0 1 0 2 GREB1 chr2:11765438 5'GT 11765438 Upstream 62bp 31763 chr2 32958940 32958940 1 + C T OV 32958941 + 32958921 32958961 41 AACTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCT AACTACATCTGTATTGGAATGCCTGAAGATTTTCTATTGCT < 41bp 0.523581107458698 0.727312833870847 NA NA prediction 0.407463452824297 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958941 chr2:32958940 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_34546 0 0 1 0 2 TTC27 chr2:32958895 3'AG 32958895 Downstream 46bp 31764 chr2 32958940 32958940 1 + C T OV 32958941 + 32958921 32958961 41 AACTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCT AACTACATCTGTATTGGAATGCCTGAAGATTTTCTATTGCT < 41bp 0.523581107458698 0.727312833870847 NA NA prediction 0.407463452824297 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32958941 chr2:32958940 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_34546 0 0 1 0 2 TTC27 chr2:32958990 5'GT 32958990 Upstream 51bp 31765 chr1 11579845 11579845 1 + C T READ 11579846 + 11579826 11579866 41 CTGCAGCCAGCCTCCAACACGGGCAGCCGCGGCCATCTCAT CTGCAGCCAGCCTCCAACATGGGCAGCCGCGGCCATCTCAT < 41bp 0.532531076399249 0.736260506706782 NA NA prediction 0.407458860615066 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11579846 chr1:11579845 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_34549 0 0 0 0 1 DISP3 chr1:11579937 5'GT 11579937 Upstream 93bp 31766 chr19 49686388 49686388 1 + C T UCEC 49686389 + 49686369 49686409 41 TCTCGCTGGATGCTGGCCTCGGGCAGGCCCCCTGGAGCGAC TCTCGCTGGATGCTGGCCTTGGGCAGGCCCCCTGGAGCGAC < 41bp 0.547024727392567 0.750753624876361 NA NA prediction 0.407457794967587 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686389 chr19:49686388 synonymous SNV . 0 20 hm7G_associated_SNPs_34550 0 0 0 0 2 TRPM4 chr19:49686335 3'AG 49686335 Downstream 54bp 31767 chr19 49686388 49686388 1 + C T UCEC 49686389 + 49686369 49686409 41 TCTCGCTGGATGCTGGCCTCGGGCAGGCCCCCTGGAGCGAC TCTCGCTGGATGCTGGCCTTGGGCAGGCCCCCTGGAGCGAC < 41bp 0.547024727392567 0.750753624876361 NA NA prediction 0.407457794967587 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49686389 chr19:49686388 synonymous SNV . 0 20 hm7G_associated_SNPs_34550 0 0 0 0 2 TRPM4 chr19:49686469 5'GT 49686469 Upstream 82bp 31768 chr7 105187707 105187707 1 + C T GBM 105187708 + 105187688 105187728 41 ACAAACTGTTGGCTTAAGTCGACCTGCCAGTGCCCCGGAGA ACAAACTGTTGGCTTAAGTTGACCTGCCAGTGCCCCGGAGA < 41bp 0.491041927343442 0.70372790987028 NA NA prediction 0.40745581974056 Functional Gain - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105187708 chr7:105187707 stopgain 0.793 0 20 hm7G_associated_SNPs_34552 0 0 1 0 2 RINT1 chr7:105187631 3'AG 105187631 Downstream 77bp 31769 chr7 105187707 105187707 1 + C T GBM 105187708 + 105187688 105187728 41 ACAAACTGTTGGCTTAAGTCGACCTGCCAGTGCCCCGGAGA ACAAACTGTTGGCTTAAGTTGACCTGCCAGTGCCCCGGAGA < 41bp 0.491041927343442 0.70372790987028 NA NA prediction 0.40745581974056 Functional Gain - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105187708 chr7:105187707 stopgain 0.793 0 20 hm7G_associated_SNPs_34552 0 0 1 0 2 RINT1 chr7:105187780 5'GT 105187780 Upstream 74bp 31770 chr21 33318387 33318387 1 + C T PRAD 33318388 + 33318368 33318408 41 GCAGGGATCCTGGGTTACTCGGATCCGTTCAGCACACAGTG GCAGGGATCCTGGGTTACTTGGATCCGTTCAGCACACAGTG < 41bp 0.492304671076837 0.703726877693061 NA NA prediction 0.407453755386121 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318388 chr21:33318387 nonsynonymous SNV 0.878 2 20 hm7G_associated_SNPs_34553 0 0 0 0 2 HUNK chr21:33318348 3'AG 33318348 Downstream 40bp 31771 chr21 33318387 33318387 1 + C T PRAD 33318388 + 33318368 33318408 41 GCAGGGATCCTGGGTTACTCGGATCCGTTCAGCACACAGTG GCAGGGATCCTGGGTTACTTGGATCCGTTCAGCACACAGTG < 41bp 0.492304671076837 0.703726877693061 NA NA prediction 0.407453755386121 Functional Gain - HUNK ENSG00000142149 CDS Human protein_coding chr21:33318388 chr21:33318387 nonsynonymous SNV 0.878 2 20 hm7G_associated_SNPs_34553 0 0 0 0 2 HUNK chr21:33318483 5'GT 33318483 Upstream 97bp 31772 chr2 109104184 109104184 1 + C T COAD 109104185 + 109104165 109104205 41 CTACTGTAACCTCTGAATTCGAGAGCTACAAAGTCCGAGTT CTACTGTAACCTCTGAATTTGAGAGCTACAAAGTCCGAGTT < 41bp 0.513764325027483 0.717491043453772 NA NA prediction 0.407453436852578 Functional Gain - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109104185 chr2:109104184 synonymous SNV . 0 20 hm7G_associated_SNPs_34554 0 0 1 0 2 GCC2 chr2:109104155 3'AG 109104155 Downstream 30bp 31773 chr2 109104184 109104184 1 + C T COAD 109104185 + 109104165 109104205 41 CTACTGTAACCTCTGAATTCGAGAGCTACAAAGTCCGAGTT CTACTGTAACCTCTGAATTTGAGAGCTACAAAGTCCGAGTT < 41bp 0.513764325027483 0.717491043453772 NA NA prediction 0.407453436852578 Functional Gain - GCC2 ENSG00000135968 CDS Human protein_coding chr2:109104185 chr2:109104184 synonymous SNV . 0 20 hm7G_associated_SNPs_34554 0 0 1 0 2 GCC2 chr2:109104276 5'GT 109104276 Upstream 93bp 31774 chr7 130021519 130021519 1 + C T COAD 130021520 + 130021500 130021540 41 TGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCC TGGCTCCCCCATCGACGTCTGAGTGCCCTTCCCCAGCATCC < 41bp 0.538604347055094 0.742330308146394 NA NA prediction 0.407451922182599 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021520 chr7:130021519 stopgain 0.899 1 20 hm7G_associated_SNPs_34555 0 0 0 0 2 CPA1 chr7:130021471 3'AG 130021471 Downstream 49bp 31775 chr7 130021519 130021519 1 + C T COAD 130021520 + 130021500 130021540 41 TGGCTCCCCCATCGACGTCCGAGTGCCCTTCCCCAGCATCC TGGCTCCCCCATCGACGTCTGAGTGCCCTTCCCCAGCATCC < 41bp 0.538604347055094 0.742330308146394 NA NA prediction 0.407451922182599 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130021520 chr7:130021519 stopgain 0.899 1 20 hm7G_associated_SNPs_34555 0 0 0 0 2 CPA1 chr7:130021521 5'GT 130021521 Upstream 3bp 31776 chr20 3008360 3008360 1 + G A LUAD 3008361 + 3008341 3008381 41 TGGCCTGTGCAGGGCTACCGGCAGAAGGACTCCTATATCGC TGGCCTGTGCAGGGCTACCAGCAGAAGGACTCCTATATCGC < 41bp 0.513497582844025 0.717223293377501 NA NA prediction 0.407451421066952 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3008361 chr20:3008360 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_34556 0 0 1 0 1 PTPRA chr20:3008353 3'AG 3008353 Downstream 8bp 31777 chr8 126445777 126445777 1 + C T COAD 126445778 + 126445758 126445798 41 AGCAGATTGTCTCCGCCGTCGCCCACTGCCACCAGTCAGCC AGCAGATTGTCTCCGCCGTTGCCCACTGCCACCAGTCAGCC < 41bp 0.492426448061169 0.703725204127657 NA NA prediction 0.407450408255314 Functional Gain - TRIB1 ENSG00000173334 CDS Human protein_coding chr8:126445778 chr8:126445777 synonymous SNV . 0 20 hm7G_associated_SNPs_34557 0 0 1 0 1 TRIB1 chr8:126445851 5'GT 126445851 Upstream 75bp 31778 chr1 43650876 43650876 1 + C T SARC 43650877 + 43650857 43650897 41 TCCTATGAACAGATGGTGGCGGCCAGTAGCCATAGCCAGAT TCCTATGAACAGATGGTGGTGGCCAGTAGCCATAGCCAGAT < 41bp 0.540809744929493 0.744532864021465 NA NA prediction 0.407446238183945 Functional Gain - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43650877 chr1:43650876 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_34558 0 0 0 0 1 CFAP57 chr1:43650820 3'AG 43650820 Downstream 57bp 31779 chr2 86718091 86718091 1 + C T UCEC 86718092 + 86718072 86718112 41 AGACCGATCATTAAGAAAACGTCTTCATCAAGAGTATGGAG AGACCGATCATTAAGAAAATGTCTTCATCAAGAGTATGGAG < 41bp 0.503218120057176 0.706940606669161 NA NA prediction 0.407444973223969 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86718092 chr2:86718091 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34559 0 0 1 0 1 KDM3A chr2:86718004 3'AG 86718004 Downstream 88bp 31780 chr17 45376714 45376714 1 + C T UCEC 45376715 + 45376695 45376735 41 GGGACTGCCTGTGTGACTCCGACTGGACCGGCTACTACTGC GGGACTGCCTGTGTGACTCTGACTGGACCGGCTACTACTGC < 41bp 0.484104604035585 0.703713874334303 NA NA prediction 0.407427748668606 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45376715 chr17:45376714 synonymous SNV . 0 20 hm7G_associated_SNPs_34563 0 0 0 0 1 ITGB3 chr17:45376674 3'AG 45376674 Downstream 41bp 31781 chr16 87436556 87436556 1 + G A LAML 87436557 + 87436537 87436577 41 TACAGCTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAAC TACAGCTCAATGCTAATCAAGCCTTCTTCCTGTTGGTGAAC < 41bp 0.496538905323423 0.703712856688813 NA NA prediction 0.407425713377627 Functional Gain - MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87436557 chr16:87436556 synonymous SNV . 0 20 hm7G_associated_SNPs_34564 0 0 0 0 2 MAP1LC3B chr16:87436529 3'AG 87436529 Downstream 28bp 31782 chr16 87436556 87436556 1 + G A LAML 87436557 + 87436537 87436577 41 TACAGCTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAAC TACAGCTCAATGCTAATCAAGCCTTCTTCCTGTTGGTGAAC < 41bp 0.496538905323423 0.703712856688813 NA NA prediction 0.407425713377627 Functional Gain - MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87436557 chr16:87436556 synonymous SNV . 0 20 hm7G_associated_SNPs_34564 0 0 0 0 2 MAP1LC3B chr16:87436532 3'AG 87436532 Downstream 25bp 31783 chr6 41197820 41197820 1 + G A LUSC 41197821 + 41197801 41197841 41 TCTGATCACTTCTCCAGAGGGGACCTCTGGCCATCCCTCCA TCTGATCACTTCTCCAGAGAGGACCTCTGGCCATCCCTCCA < 41bp 0.495482739695405 0.703712838102553 NA NA prediction 0.407425676205105 Functional Gain - TREML4 ENSG00000188056 CDS Human protein_coding chr6:41197821 chr6:41197820 nonsynonymous SNV 0.031 0 20 hm7G_associated_SNPs_34565 0 0 0 0 2 TREML4 chr6:41197800 3'AG 41197800 Downstream 21bp 31784 chr6 41197820 41197820 1 + G A LUSC 41197821 + 41197801 41197841 41 TCTGATCACTTCTCCAGAGGGGACCTCTGGCCATCCCTCCA TCTGATCACTTCTCCAGAGAGGACCTCTGGCCATCCCTCCA < 41bp 0.495482739695405 0.703712838102553 NA NA prediction 0.407425676205105 Functional Gain - TREML4 ENSG00000188056 CDS Human protein_coding chr6:41197821 chr6:41197820 nonsynonymous SNV 0.031 0 20 hm7G_associated_SNPs_34565 0 0 0 0 2 TREML4 chr6:41197860 5'GT 41197860 Upstream 41bp 31785 chr15 85343171 85343171 1 + C T PRAD 85343172 + 85343152 85343192 41 AACCCTGATTTGAGCCAGACGTCCAAAGTGAAACCTCCGGG AACCCTGATTTGAGCCAGATGTCCAAAGTGAAACCTCCGGG < 41bp 0.527941326551899 0.731652064905399 NA NA prediction 0.407421476707 Functional Gain - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85343172 chr15:85343171 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_34566 0 0 1 0 2 ZNF592 chr15:85343073 3'AG 85343073 Downstream 99bp 31786 chr15 85343171 85343171 1 + C T PRAD 85343172 + 85343152 85343192 41 AACCCTGATTTGAGCCAGACGTCCAAAGTGAAACCTCCGGG AACCCTGATTTGAGCCAGATGTCCAAAGTGAAACCTCCGGG < 41bp 0.527941326551899 0.731652064905399 NA NA prediction 0.407421476707 Functional Gain - ZNF592 ENSG00000166716 CDS Human protein_coding chr15:85343172 chr15:85343171 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_34566 0 0 1 0 2 ZNF592 chr15:85343208 5'GT 85343208 Upstream 38bp 31787 chrX 135106602 135106602 1 + G T LUAD 135106603 + 135106583 135106623 41 TTTTACCGTGTGGGTATTTGGTGGTGGCACCACTGCAATGC TTTTACCGTGTGGGTATTTTGTGGTGGCACCACTGCAATGC < 41bp 0.371879333175063 0.703709298803391 NA NA prediction 0.407418597606781 Functional Gain - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135106603 chrX:135106602 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_34569 0 0 1 0 1 SLC9A6 chrX:135106642 5'GT 135106642 Upstream 41bp 31788 chr10 121693241 121693241 1 + C T HNSC 121693242 + 121693222 121693262 41 ACTACTTAAAGAAATTTATCGAACAATGAACATTAGTCCAG ACTACTTAAAGAAATTTATTGAACAATGAACATTAGTCCAG < 41bp 0.519848614231765 0.723557675098582 NA NA prediction 0.407418121733635 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121693242 chr10:121693241 stopgain 1.000 0 20 hm7G_associated_SNPs_34570 0 0 1 1 2 SEC23IP chr10:121693198 3'AG 121693198 Downstream 44bp 31789 chr10 121693241 121693241 1 + C T HNSC 121693242 + 121693222 121693262 41 ACTACTTAAAGAAATTTATCGAACAATGAACATTAGTCCAG ACTACTTAAAGAAATTTATTGAACAATGAACATTAGTCCAG < 41bp 0.519848614231765 0.723557675098582 NA NA prediction 0.407418121733635 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121693242 chr10:121693241 stopgain 1.000 0 20 hm7G_associated_SNPs_34570 0 0 1 1 2 SEC23IP chr10:121693299 5'GT 121693299 Upstream 59bp 31790 chr2 74076532 74076532 1 + G A rs141557634 74076533 + 74076513 74076553 41 CATGTGGTGGTGCCTGGGCGGCTGTGCCCACAGTTTCTCCA CATGTGGTGGTGCCTGGGCAGCTGTGCCCACAGTTTCTCCA < 41bp 0.494926273665495 0.703707966086005 NA NA prediction 0.407415932172009 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076533 chr2:74076532 nonsynonymous SNV 0.040 0 20 hm7G_associated_SNPs_34572 0 0 1 0 2 STAMBP chr2:74076490 3'AG 74076490 Downstream 43bp 31791 chr2 74076532 74076532 1 + G A rs141557634 74076533 + 74076513 74076553 41 CATGTGGTGGTGCCTGGGCGGCTGTGCCCACAGTTTCTCCA CATGTGGTGGTGCCTGGGCAGCTGTGCCCACAGTTTCTCCA < 41bp 0.494926273665495 0.703707966086005 NA NA prediction 0.407415932172009 Functional Gain - STAMBP ENSG00000124356 CDS Human protein_coding chr2:74076533 chr2:74076532 nonsynonymous SNV 0.040 0 20 hm7G_associated_SNPs_34572 0 0 1 0 2 STAMBP chr2:74076614 5'GT 74076614 Upstream 83bp 31792 chr8 55370926 55370926 1 + G A STAD 55370927 + 55370907 55370947 41 GGCCGATGAACGCTTTCATGGTGTGGGCTAAGGACGAGCGC GGCCGATGAACGCTTTCATAGTGTGGGCTAAGGACGAGCGC < 41bp 0.561014613171998 0.764722355841636 NA NA prediction 0.407415485339276 Functional Gain - SOX17 ENSG00000164736 CDS Human protein_coding chr8:55370927 chr8:55370926 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34573 0 0 0 0 1 SOX17 chr8:55371005 5'GT 55371005 Upstream 80bp 31793 chr4 57193889 57193889 1 + C T LUAD 57193890 + 57193870 57193910 41 CCACCCCGGATGCTGCCCCCGTGTCAACAGAACCAGCCTGG CCACCCCGGATGCTGCCCCTGTGTCAACAGAACCAGCCTGG < 41bp 0.504266184245186 0.707972895961085 NA NA prediction 0.407413423431799 Functional Gain - KIAA1211 ENSG00000109265 CDS Human protein_coding chr4:57193890 chr4:57193889 synonymous SNV . 0 20 hm7G_associated_SNPs_34574 0 0 0 0 1 KIAA1211 chr4:57193810 3'AG 57193810 Downstream 80bp 31794 chr1 231339713 231339713 1 + C T rs11806609 231339714 + 231339694 231339734 41 TCACCCACAGCCCCGTGGACGGCTACATCCTGGAGCTGGAC TCACCCACAGCCCCGTGGATGGCTACATCCTGGAGCTGGAC < 41bp 0.531639075969697 0.735345627116815 NA NA prediction 0.407413102294237 Functional Gain - TRIM67 ENSG00000119283 CDS Human protein_coding chr1:231339714 chr1:231339713 synonymous SNV . 0 20 hm7G_associated_SNPs_34575 0 0 0 0 1 TRIM67 chr1:231339758 5'GT 231339758 Upstream 46bp 31795 chr19 14703115 14703115 1 + G T UCEC 14703116 + 14703096 14703136 41 CCATGGAGGAGGAGGAGGAGGATGATGACTATGAGAACTCA CCATGGAGGAGGAGGAGGATGATGATGACTATGAGAACTCA < 41bp 0.700109238094969 0.903814948406738 NA NA prediction 0.407411420623539 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14703116 chr19:14703115 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_34577 0 0 0 0 2 CLEC17A chr19:14703093 3'AG 14703093 Downstream 23bp 31796 chr19 14703115 14703115 1 + G T UCEC 14703116 + 14703096 14703136 41 CCATGGAGGAGGAGGAGGAGGATGATGACTATGAGAACTCA CCATGGAGGAGGAGGAGGATGATGATGACTATGAGAACTCA < 41bp 0.700109238094969 0.903814948406738 NA NA prediction 0.407411420623539 Functional Gain - CLEC17A ENSG00000187912 CDS Human protein_coding chr19:14703116 chr19:14703115 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_34577 0 0 0 0 2 CLEC17A chr19:14703170 5'GT 14703170 Upstream 56bp 31797 chr16 84872301 84872301 1 + G A CESC 84872302 + 84872282 84872322 41 ATGCTGCACAACAAGCTTCGGGGCCAGGTGCAGCCTCAGGC ATGCTGCACAACAAGCTTCAGGGCCAGGTGCAGCCTCAGGC < 41bp 0.526069221054541 0.729774458396425 NA NA prediction 0.407410474683768 Functional Gain - CRISPLD2 ENSG00000103196 CDS Human protein_coding chr16:84872302 chr16:84872301 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_34579 0 0 0 0 1 CRISPLD2 chr16:84872341 5'GT 84872341 Upstream 41bp 31798 chr4 5803763 5803763 1 + C T PAAD 5803764 + 5803744 5803784 41 AGGCGTATTACCAGCAAATCGGAAGGATCATGGAGGACCAC AGGCGTATTACCAGCAAATTGGAAGGATCATGGAGGACCAC < 41bp 0.532023303364884 0.735728077288332 NA NA prediction 0.407409547846895 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5803764 chr4:5803763 synonymous SNV . 0 20 hm7G_associated_SNPs_34580 2 0 1 0 1 EVC chr4:5803677 3'AG 5803677 Downstream 87bp 31799 chr3 15300421 15300421 1 - C T LGG 15300420 - 15300400 15300440 41 TCCAGTGCCATGGGGCCTCGGGGATGCGGTGTTGGTGCTGA TCCAGTGCCATGGGGCCTCAGGGATGCGGTGTTGGTGCTGA < 41bp 0.571782462529939 0.775486574869742 NA NA prediction 0.407408224679606 Functional Gain - SH3BP5 ENSG00000131370 CDS Human protein_coding chr3:15300420 chr3:15300421 nonsynonymous SNV 0.973 3 20 hm7G_associated_SNPs_34581 0 0 1 0 1 SH3BP5 chr3:15300338 5'GT 15300338 Upstream 84bp 31800 chr3 42236404 42236404 1 + C T PAAD 42236405 + 42236385 42236425 41 GCCCAATACCACGTCTCGGCGCTACCACTCACTGGGCCTGT GCCCAATACCACGTCTCGGTGCTACCACTCACTGGGCCTGT < 41bp 0.510334982308604 0.714037503284126 NA NA prediction 0.407405041951043 Functional Gain - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42236405 chr3:42236404 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_34582 0 0 1 0 1 TRAK1 chr3:42236433 5'GT 42236433 Upstream 30bp 31801 chr18 20774416 20774416 1 + C T UCEC 20774417 + 20774397 20774437 41 GACTTTATTTTTCAGATGTCGAACTCTCTCAGGTTCACCCA GACTTTATTTTTCAGATGTTGAACTCTCTCAGGTTCACCCA < 41bp 0.529892161607763 0.733594186631772 NA NA prediction 0.407404050048018 Functional Gain - CABLES1 ENSG00000134508 CDS Human protein_coding chr18:20774417 chr18:20774416 stopgain 1.000 1 20 hm7G_associated_SNPs_34583 0 0 1 0 2 CABLES1 chr18:20774412 3'AG 20774412 Downstream 5bp 31802 chr18 20774416 20774416 1 + C T UCEC 20774417 + 20774397 20774437 41 GACTTTATTTTTCAGATGTCGAACTCTCTCAGGTTCACCCA GACTTTATTTTTCAGATGTTGAACTCTCTCAGGTTCACCCA < 41bp 0.529892161607763 0.733594186631772 NA NA prediction 0.407404050048018 Functional Gain - CABLES1 ENSG00000134508 CDS Human protein_coding chr18:20774417 chr18:20774416 stopgain 1.000 1 20 hm7G_associated_SNPs_34583 0 0 1 0 2 CABLES1 chr18:20774504 5'GT 20774504 Upstream 89bp 31803 chr19 18239714 18239714 1 + C T UCEC 18239715 + 18239695 18239735 41 AGTCACGGAGGAAGCCATGCGAAAGCGACTTTGAGACCATC AGTCACGGAGGAAGCCATGTGAAAGCGACTTTGAGACCATC < 41bp 0.549752585454928 0.753454574200034 NA NA prediction 0.407403977490211 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18239715 chr19:18239714 synonymous SNV . 0 20 hm7G_associated_SNPs_34584 0 0 1 0 2 MAST3 chr19:18239676 3'AG 18239676 Downstream 39bp 31804 chr19 18239714 18239714 1 + C T UCEC 18239715 + 18239695 18239735 41 AGTCACGGAGGAAGCCATGCGAAAGCGACTTTGAGACCATC AGTCACGGAGGAAGCCATGTGAAAGCGACTTTGAGACCATC < 41bp 0.549752585454928 0.753454574200034 NA NA prediction 0.407403977490211 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18239715 chr19:18239714 synonymous SNV . 0 20 hm7G_associated_SNPs_34584 0 0 1 0 2 MAST3 chr19:18239761 5'GT 18239761 Upstream 48bp 31805 chr8 68942753 68942753 1 + C T STAD 68942754 + 68942734 68942774 41 GTTGCTGAAGCGGACTCCACGGAAACACAGTGACTATGCAG GTTGCTGAAGCGGACTCCATGGAAACACAGTGACTATGCAG < 41bp 0.4909338759422 0.703698525588799 NA NA prediction 0.407397051177597 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68942754 chr8:68942753 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_34586 0 0 0 0 1 PREX2 chr8:68942732 3'AG 68942732 Downstream 22bp 31806 chr19 35540200 35540200 1 + G A rs149970077 35540201 + 35540181 35540221 41 GTGTCTGTTGCAGGTGGCCGGACTGTGCCATGCTGCTCCAG GTGTCTGTTGCAGGTGGCCAGACTGTGCCATGCTGCTCCAG < 41bp 0.480118970902686 0.703698263979216 NA NA prediction 0.407396527958432 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35540201 chr19:35540200 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_34588 0 0 1 0 2 HPN chr19:35540194 3'AG 35540194 Downstream 7bp 31807 chr19 35540200 35540200 1 + G A rs149970077 35540201 + 35540181 35540221 41 GTGTCTGTTGCAGGTGGCCGGACTGTGCCATGCTGCTCCAG GTGTCTGTTGCAGGTGGCCAGACTGTGCCATGCTGCTCCAG < 41bp 0.480118970902686 0.703698263979216 NA NA prediction 0.407396527958432 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35540201 chr19:35540200 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_34588 0 0 1 0 2 HPN chr19:35540295 5'GT 35540295 Upstream 96bp 31808 chr11 76253350 76253350 1 + C T UCEC 76253351 + 76253331 76253371 41 CAGACCGCAACACAGACTTCGGTGGTGGTGAAGTCCATCCC CAGACCGCAACACAGACTTTGGTGGTGGTGAAGTCCATCCC < 41bp 0.508654428925608 0.71235142418593 NA NA prediction 0.407393990520645 Functional Gain - EMSY ENSG00000158636 CDS Human protein_coding chr11:76253351 chr11:76253350 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_34589 0 0 1 0 1 EMSY chr11:76253411 5'GT 76253411 Upstream 62bp 31809 chr19 2396587 2396587 1 + G A SKCM 2396588 + 2396568 2396608 41 CCACACGGCCGAGCTGCGGGGAATCCGGTGGACCAGCAGTT CCACACGGCCGAGCTGCGGAGAATCCGGTGGACCAGCAGTT < 41bp 0.47785635289799 0.703695934294673 NA NA prediction 0.407391868589347 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2396588 chr19:2396587 nonsynonymous SNV 0.004 5 20 hm7G_associated_SNPs_34591 0 0 0 0 2 TMPRSS9 chr19:2396537 3'AG 2396537 Downstream 51bp 31810 chr19 2396587 2396587 1 + G A SKCM 2396588 + 2396568 2396608 41 CCACACGGCCGAGCTGCGGGGAATCCGGTGGACCAGCAGTT CCACACGGCCGAGCTGCGGAGAATCCGGTGGACCAGCAGTT < 41bp 0.47785635289799 0.703695934294673 NA NA prediction 0.407391868589347 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2396588 chr19:2396587 nonsynonymous SNV 0.004 5 20 hm7G_associated_SNPs_34591 0 0 0 0 2 TMPRSS9 chr19:2396664 5'GT 2396664 Upstream 78bp 31811 chr20 33570325 33570325 1 + C T SKCM 33570326 + 33570306 33570346 41 TTCAGTACTTTGCCATCGTCGCTGCCCTGGGAGACGGGCCG TTCAGTACTTTGCCATCGTTGCTGCCCTGGGAGACGGGCCG < 41bp 0.52537587001291 0.729067789266229 NA NA prediction 0.407383838506638 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33570326 chr20:33570325 synonymous SNV . 0 20 hm7G_associated_SNPs_34593 0 0 0 0 2 MYH7B chr20:33570262 3'AG 33570262 Downstream 64bp 31812 chr20 33570325 33570325 1 + C T SKCM 33570326 + 33570306 33570346 41 TTCAGTACTTTGCCATCGTCGCTGCCCTGGGAGACGGGCCG TTCAGTACTTTGCCATCGTTGCTGCCCTGGGAGACGGGCCG < 41bp 0.52537587001291 0.729067789266229 NA NA prediction 0.407383838506638 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33570326 chr20:33570325 synonymous SNV . 0 20 hm7G_associated_SNPs_34593 0 0 0 0 2 MYH7B chr20:33570358 5'GT 33570358 Upstream 34bp 31813 chr22 31524540 31524540 1 + G A KIRC 31524541 + 31524521 31524561 41 GGTCCCAGCCCCTCAGGACGGAAGAGCCACCGACTCCAGGT GGTCCCAGCCCCTCAGGACAGAAGAGCCACCGACTCCAGGT < 41bp 0.536450786448075 0.740141755177788 NA NA prediction 0.407381937459425 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31524541 chr22:31524540 nonsynonymous SNV 0.993 0 20 hm7G_associated_SNPs_34594 0 0 0 0 1 INPP5J chr22:31524457 3'AG 31524457 Downstream 84bp 31814 chr1 1957121 1957121 1 + G A rs77892827 1957122 + 1957102 1957142 41 CCTGGTTCCACGACGTGACGGTGGAGAACAAGCTCATCCGG CCTGGTTCCACGACGTGACAGTGGAGAACAAGCTCATCCGG < 41bp 0.52794755862914 0.731636173494849 NA NA prediction 0.407377229731417 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1957122 chr1:1957121 synonymous SNV . 0 20 hm7G_associated_SNPs_34596 0 0 0 0 1 GABRD chr1:1957177 5'GT 1957177 Upstream 57bp 31815 chr16 31309182 31309182 1 + G T LUAD 31309183 + 31309163 31309203 41 GGGACAAGCTGACGGACGTGGCCATTGGGGCCCCAGGAGAG GGGACAAGCTGACGGACGTTGCCATTGGGGCCCCAGGAGAG < 41bp 0.338069431589021 0.70368723705392 NA NA prediction 0.40737447410784 Functional Gain - ITGAM ENSG00000169896 CDS Human protein_coding chr16:31309183 chr16:31309182 synonymous SNV . 0 20 hm7G_associated_SNPs_34598 0 0 0 0 1 ITGAM chr16:31309275 5'GT 31309275 Upstream 94bp 31816 chr22 30405112 30405112 1 + C T LUSC 30405113 + 30405093 30405133 41 TGCACTCAGATGCCAGATCCGGGAAAGTAAGTCCTTGGCCT TGCACTCAGATGCCAGATCTGGGAAAGTAAGTCCTTGGCCT < 41bp 0.49246103939673 0.703685909286622 NA NA prediction 0.407371818573244 Functional Gain - MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30405113 chr22:30405112 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_34599 0 0 1 0 1 MTMR3 chr22:30405118 5'GT 30405118 Upstream 7bp 31817 chr22 20126835 20126835 1 + C T STAD 20126836 + 20126816 20126856 41 GGACCCTGGTGTTTTCCCCCGAGGTAGGGCCCTGTGCTGCG GGACCCTGGTGTTTTCCCCTGAGGTAGGGCCCTGTGCTGCG < 41bp 0.519419578821288 0.723105467089835 NA NA prediction 0.407371776537095 Functional Gain - ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20126836 chr22:20126835 stopgain 1.000 0 20 hm7G_associated_SNPs_34600 0 0 1 0 1 ZDHHC8 chr22:20126838 5'GT 20126838 Upstream 4bp 31818 chr12 4835967 4835967 1 + C T rs138649928 4835968 + 4835948 4835988 41 CAACCAGCTGCCTCTCAATCGCACCATCCCCGACACGCGAG CAACCAGCTGCCTCTCAATTGCACCATCCCCGACACGCGAG < 41bp 0.549946442667566 0.753632061502117 NA NA prediction 0.407371237669104 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4835968 chr12:4835967 nonsynonymous SNV 0.913 4 20 hm7G_associated_SNPs_34601 0 0 0 0 1 GALNT8 chr12:4835995 5'GT 4835995 Upstream 29bp 31819 chr13 103492102 103492102 1 + C T BLCA 103492103 + 103492083 103492123 41 GCAGCATGGGCGTCTGGGCCGGTCTTTCAGTGCTAGTTTCC GCAGCATGGGCGTCTGGGCTGGTCTTTCAGTGCTAGTTTCC < 41bp 0.532081166612767 0.735764740084624 NA NA prediction 0.407367146943713 Functional Gain - BIVM;BIVM-ERCC5 ENSG00000134897;ENSG00000270181 CDS Human other chr13:103492103 chr13:103492102 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_34604 0 0 1 0 1 BIVM;BIVM-ERCC5 chr13:103492153 5'GT 103492153 Upstream 52bp 31820 chr11 76831867 76831867 1 + C T READ 76831868 + 76831848 76831888 41 CACCGACCAGCCCGAGGGCCGCTATGTCATCATCCCCACAA CACCGACCAGCCCGAGGGCTGCTATGTCATCATCCCCACAA < 41bp 0.546511101764579 0.750194242219369 NA NA prediction 0.407366280909579 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76831868 chr11:76831867 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_34605 1 0 0 0 1 CAPN5 chr11:76831955 5'GT 76831955 Upstream 89bp 31821 chr19 55800958 55800958 1 + C T LGG 55800959 + 55800939 55800979 41 TTCCGCCAGATTGTGTCTGCGCTGGACTTCTGCCACAGCTA TTCCGCCAGATTGTGTCTGTGCTGGACTTCTGCCACAGCTA < 41bp 0.530082871610608 0.73376588630944 NA NA prediction 0.407366029397666 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55800959 chr19:55800958 nonsynonymous SNV 0.794 4 20 hm7G_associated_SNPs_34606 0 0 0 0 1 BRSK1 chr19:55800988 5'GT 55800988 Upstream 31bp 31822 chr12 29474808 29474808 1 + C T LUAD 29474809 + 29474789 29474829 41 CGGAGTTGGGAATGGAGCACGTACAATACAGAAATGCTGAT CGGAGTTGGGAATGGAGCATGTACAATACAGAAATGCTGAT < 41bp 0.516206218615733 0.719887467126666 NA NA prediction 0.407362497021865 Functional Gain - FAR2 ENSG00000064763 CDS Human protein_coding chr12:29474809 chr12:29474808 nonsynonymous SNV 0.573 4 20 hm7G_associated_SNPs_34608 0 0 1 0 1 FAR2 chr12:29474728 3'AG 29474728 Downstream 81bp 31823 chr1 201187676 201187676 1 + C T LGG 201187677 + 201187657 201187697 41 GAGAGGAGGTGGACGGTGGCGGACGTGCGGCAGGGCTGTCA GAGAGGAGGTGGACGGTGGTGGACGTGCGGCAGGGCTGTCA < 41bp 0.516728756186271 0.720407667752131 NA NA prediction 0.407357823131722 Functional Gain - IGFN1 ENSG00000163395 CDS Human protein_coding chr1:201187677 chr1:201187676 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_34609 0 0 0 0 1 IGFN1 chr1:201187658 3'AG 201187658 Downstream 19bp 31824 chr3 58395860 58395860 1 + C T STAD 58395861 + 58395841 58395881 41 AATAGTGAAGAGCATTCAGCGAAGTACAGCAACTCCAATAA AATAGTGAAGAGCATTCAGTGAAGTACAGCAACTCCAATAA < 41bp 0.499674864148775 0.703678545485858 NA NA prediction 0.407357090971716 Functional Gain - PXK ENSG00000168297 CDS Human protein_coding chr3:58395861 chr3:58395860 nonsynonymous SNV 0.194 0 20 hm7G_associated_SNPs_34610 0 0 1 0 2 PXK chr3:58395817 3'AG 58395817 Downstream 44bp 31825 chr3 58395860 58395860 1 + C T STAD 58395861 + 58395841 58395881 41 AATAGTGAAGAGCATTCAGCGAAGTACAGCAACTCCAATAA AATAGTGAAGAGCATTCAGTGAAGTACAGCAACTCCAATAA < 41bp 0.499674864148775 0.703678545485858 NA NA prediction 0.407357090971716 Functional Gain - PXK ENSG00000168297 CDS Human protein_coding chr3:58395861 chr3:58395860 nonsynonymous SNV 0.194 0 20 hm7G_associated_SNPs_34610 0 0 1 0 2 PXK chr3:58395886 5'GT 58395886 Upstream 27bp 31826 chr20 44670038 44670038 1 + G A SKCM 44670039 + 44670019 44670059 41 TGCCAAGCTGGCTTGGGAAGGAAATGAGACGGTGACCACAC TGCCAAGCTGGCTTGGGAAAGAAATGAGACGGTGACCACAC < 41bp 0.511128305344323 0.714805013070722 NA NA prediction 0.407353415452797 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44670039 chr20:44670038 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_34611 0 0 0 0 1 SLC12A5 chr20:44669968 3'AG 44669968 Downstream 71bp 31827 chr2 112834827 112834827 1 + C T LGG 112834828 + 112834808 112834848 41 TTTATTGTTTCTATTAAAACGGAGAATACAGATGCAAGCTG TTTATTGTTTCTATTAAAATGGAGAATACAGATGCAAGCTG < 41bp 0.528321437345534 0.731997985885888 NA NA prediction 0.40735309708071 Functional Gain - TMEM87B ENSG00000153214 CDS Human protein_coding chr2:112834828 chr2:112834827 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_34612 0 0 0 0 2 TMEM87B chr2:112834769 3'AG 112834769 Downstream 59bp 31828 chr2 112834827 112834827 1 + C T LGG 112834828 + 112834808 112834848 41 TTTATTGTTTCTATTAAAACGGAGAATACAGATGCAAGCTG TTTATTGTTTCTATTAAAATGGAGAATACAGATGCAAGCTG < 41bp 0.528321437345534 0.731997985885888 NA NA prediction 0.40735309708071 Functional Gain - TMEM87B ENSG00000153214 CDS Human protein_coding chr2:112834828 chr2:112834827 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_34612 0 0 0 0 2 TMEM87B chr2:112834859 5'GT 112834859 Upstream 33bp 31829 chrX 50085236 50085236 1 + G T LUAD 50085237 + 50085217 50085257 41 CCCATGAGACCCTGTACTTGGCAGTGAAGCTGGTGGATCTC CCCATGAGACCCTGTACTTTGCAGTGAAGCTGGTGGATCTC < 41bp 0.709750419712292 0.913424374274305 NA NA prediction 0.407347909124027 Functional Gain - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50085237 chrX:50085236 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34615 0 0 0 0 1 CCNB3 chrX:50085201 3'AG 50085201 Downstream 36bp 31830 chr14 56755313 56755313 1 + C T GBM 56755314 + 56755294 56755334 41 CTTACACAGCACGGATATTCGCCGCCGGATTTGACTCTTCC CTTACACAGCACGGATATTTGCCGCCGGATTTGACTCTTCC < 41bp 0.535721107472693 0.739394729986046 NA NA prediction 0.407347245026707 Functional Gain - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56755314 chr14:56755313 synonymous SNV . 0 20 hm7G_associated_SNPs_34616 0 0 1 0 1 PELI2 chr14:56755352 5'GT 56755352 Upstream 40bp 31831 chrX 153695461 153695461 1 + C T READ 153695462 + 153695442 153695482 41 GGTCCAGGAGCCCCGGGTCCGTGCCAAGTACCGCGGCATTG GGTCCAGGAGCCCCGGGTCTGTGCCAAGTACCGCGGCATTG < 41bp 0.510746275729106 0.71441968203661 NA NA prediction 0.407346812615006 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695462 chrX:153695461 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_34618 0 0 1 0 2 PLXNA3 chrX:153695400 3'AG 153695400 Downstream 62bp 31832 chrX 153695461 153695461 1 + C T READ 153695462 + 153695442 153695482 41 GGTCCAGGAGCCCCGGGTCCGTGCCAAGTACCGCGGCATTG GGTCCAGGAGCCCCGGGTCTGTGCCAAGTACCGCGGCATTG < 41bp 0.510746275729106 0.71441968203661 NA NA prediction 0.407346812615006 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695462 chrX:153695461 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_34618 0 0 1 0 2 PLXNA3 chrX:153695493 5'GT 153695493 Upstream 33bp 31833 chr2 36704144 36704144 1 + C T rs848547 36704145 + 36704125 36704165 41 GCGTTGCCATCTGCTTCACCGCCCAGTGTGGTGAGATAAAC GCGTTGCCATCTGCTTCACTGCCCAGTGTGGTGAGATAAAC < 41bp 0.483716834615713 0.703672574337351 NA NA prediction 0.407345148674702 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36704145 chr2:36704144 synonymous SNV . 0 20 hm7G_associated_SNPs_34620 0 0 1 0 1 CRIM1 chr2:36704214 5'GT 36704214 Upstream 71bp 31834 chr17 58234823 58234823 1 + G A STAD 58234824 + 58234804 58234844 41 GAACAAGGCCAGCATTTCTGGAGGAGGACTGCCTGCCCCAT GAACAAGGCCAGCATTTCTAGAGGAGGACTGCCTGCCCCAT < 41bp 0.535523618811458 0.739196128368787 NA NA prediction 0.407345019114659 Functional Gain - CA4 ENSG00000167434 CDS Human protein_coding chr17:58234824 chr17:58234823 nonsynonymous SNV 0.112 3 20 hm7G_associated_SNPs_34621 0 0 0 0 1 CA4 chr17:58234788 3'AG 58234788 Downstream 36bp 31835 chr3 13661294 13661294 1 + C T STAD 13661295 + 13661275 13661315 41 CCATATGCTCCTGTTTTCCCGGCTATGCCATCATGGCGGAT CCATATGCTCCTGTTTTCCTGGCTATGCCATCATGGCGGAT < 41bp 0.562635604100492 0.766305501070612 NA NA prediction 0.407339793940239 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13661295 chr3:13661294 synonymous SNV . 0 20 hm7G_associated_SNPs_34622 0 0 0 0 2 FBLN2 chr3:13661230 3'AG 13661230 Downstream 65bp 31836 chr3 13661294 13661294 1 + C T STAD 13661295 + 13661275 13661315 41 CCATATGCTCCTGTTTTCCCGGCTATGCCATCATGGCGGAT CCATATGCTCCTGTTTTCCTGGCTATGCCATCATGGCGGAT < 41bp 0.562635604100492 0.766305501070612 NA NA prediction 0.407339793940239 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13661295 chr3:13661294 synonymous SNV . 0 20 hm7G_associated_SNPs_34622 0 0 0 0 2 FBLN2 chr3:13661331 5'GT 13661331 Upstream 38bp 31837 chr1 40430897 40430897 1 + C T UCEC 40430898 + 40430878 40430918 41 CTCAGGATCATCTTCTCCACGCCCCTGGCCGTCATTGCCTA CTCAGGATCATCTTCTCCATGCCCCTGGCCGTCATTGCCTA < 41bp 0.515677473551956 0.719346357725395 NA NA prediction 0.407337768346877 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40430898 chr1:40430897 nonsynonymous SNV 0.892 3 20 hm7G_associated_SNPs_34624 0 0 0 0 1 MFSD2A chr1:40430883 3'AG 40430883 Downstream 15bp 31838 chr16 1816028 1816028 1 + G A rs184317970 1816029 + 1816009 1816049 41 ACGTGAACCCAGAGGACCCGGGCGCAGATGGCGTGCTGGCC ACGTGAACCCAGAGGACCCAGGCGCAGATGGCGTGCTGGCC < 41bp 0.475339154086317 0.703668473551033 NA NA prediction 0.407336947102066 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1816029 chr16:1816028 synonymous SNV . 0 20 hm7G_associated_SNPs_34625 0 0 1 0 1 MAPK8IP3 chr16:1815961 3'AG 1815961 Downstream 68bp 31839 chr12 7173870 7173870 1 + C T rs78558058 7173871 + 7173851 7173891 41 AATTCTGTTTGGGAGCCTGCGAAGGCAAAATATGTCTTTAG AATTCTGTTTGGGAGCCTGTGAAGGCAAAATATGTCTTTAG < 41bp 0.548602582779576 0.752269565921906 NA NA prediction 0.40733396628466 Functional Gain - C1S ENSG00000182326 CDS Human protein_coding chr12:7173871 chr12:7173870 nonsynonymous SNV 0.921 0 20 hm7G_associated_SNPs_34627 0 0 1 0 2 C1S chr12:7173822 3'AG 7173822 Downstream 49bp 31840 chr12 7173870 7173870 1 + C T rs78558058 7173871 + 7173851 7173891 41 AATTCTGTTTGGGAGCCTGCGAAGGCAAAATATGTCTTTAG AATTCTGTTTGGGAGCCTGTGAAGGCAAAATATGTCTTTAG < 41bp 0.548602582779576 0.752269565921906 NA NA prediction 0.40733396628466 Functional Gain - C1S ENSG00000182326 CDS Human protein_coding chr12:7173871 chr12:7173870 nonsynonymous SNV 0.921 0 20 hm7G_associated_SNPs_34627 0 0 1 0 2 C1S chr12:7173937 5'GT 7173937 Upstream 68bp 31841 chr1 7880657 7880657 1 + C T CESC 7880658 + 7880638 7880678 41 GGTCGGGCATAAGCCAATGCGGTTACAGCAGCACCATTGTC GGTCGGGCATAAGCCAATGTGGTTACAGCAGCACCATTGTC < 41bp 0.480791180809145 0.703666583668751 NA NA prediction 0.407333167337501 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7880658 chr1:7880657 synonymous SNV . 0 20 hm7G_associated_SNPs_34628 0 0 0 0 1 PER3 chr1:7880700 5'GT 7880700 Upstream 44bp 31842 chr1 85589838 85589838 1 + C T rs138281012 85589839 + 85589819 85589859 41 GCCACCACACCATTCACGACGGAACTGTCCACACTATTCAG GCCACCACACCATTCACGATGGAACTGTCCACACTATTCAG < 41bp 0.512449006485816 0.716111148776589 NA NA prediction 0.407324284581546 Functional Gain - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85589839 chr1:85589838 synonymous SNV . 0 20 hm7G_associated_SNPs_34631 0 0 0 0 2 WDR63 chr1:85589804 3'AG 85589804 Downstream 35bp 31843 chr1 85589838 85589838 1 + C T rs138281012 85589839 + 85589819 85589859 41 GCCACCACACCATTCACGACGGAACTGTCCACACTATTCAG GCCACCACACCATTCACGATGGAACTGTCCACACTATTCAG < 41bp 0.512449006485816 0.716111148776589 NA NA prediction 0.407324284581546 Functional Gain - WDR63 ENSG00000162643 CDS Human protein_coding chr1:85589839 chr1:85589838 synonymous SNV . 0 20 hm7G_associated_SNPs_34631 0 0 0 0 2 WDR63 chr1:85589934 5'GT 85589934 Upstream 97bp 31844 chr12 111079383 111079383 1 + G T UCEC 111079384 + 111079364 111079404 41 CCCTCTCAGTGGAAACCCTGGTTATGTCGTGGGGCTCCCAT CCCTCTCAGTGGAAACCCTTGTTATGTCGTGGGGCTCCCAT < 41bp 0.375657622029336 0.703661163246241 NA NA prediction 0.407322326492482 Functional Gain - TCTN1 ENSG00000204852 CDS Human protein_coding chr12:111079384 chr12:111079383 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_34632 0 0 0 0 1 TCTN1 chr12:111079347 3'AG 111079347 Downstream 37bp 31845 chr3 133472449 133472449 1 + C T rs41298977 133472450 + 133472430 133472470 41 CTCTTTCAGGCAAACGAAGCGGATGCTGTGACACTGGATGC CTCTTTCAGGCAAACGAAGTGGATGCTGTGACACTGGATGC < 41bp 0.533702199812042 0.737363239582144 NA NA prediction 0.407322079540205 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133472450 chr3:133472449 nonsynonymous SNV 0.024 3 20 hm7G_associated_SNPs_34633 0 0 1 0 1 TF chr3:133472439 3'AG 133472439 Downstream 11bp 31846 chr17 80897305 80897305 1 + C T COAD 80897306 + 80897286 80897326 41 CCTACAGTGACGTCGTGGGCGCGGATGTGCTGGACGAGGTG CCTACAGTGACGTCGTGGGTGCGGATGTGCTGGACGAGGTG < 41bp 0.509864889863018 0.7135218863978 NA NA prediction 0.407313993069563 Functional Gain - TBCD ENSG00000141556 CDS Human protein_coding chr17:80897306 chr17:80897305 synonymous SNV . 0 20 hm7G_associated_SNPs_34634 0 0 1 0 2 TBCD chr17:80897243 3'AG 80897243 Downstream 63bp 31847 chr17 80897305 80897305 1 + C T COAD 80897306 + 80897286 80897326 41 CCTACAGTGACGTCGTGGGCGCGGATGTGCTGGACGAGGTG CCTACAGTGACGTCGTGGGTGCGGATGTGCTGGACGAGGTG < 41bp 0.509864889863018 0.7135218863978 NA NA prediction 0.407313993069563 Functional Gain - TBCD ENSG00000141556 CDS Human protein_coding chr17:80897306 chr17:80897305 synonymous SNV . 0 20 hm7G_associated_SNPs_34634 0 0 1 0 2 TBCD chr17:80897352 5'GT 80897352 Upstream 48bp 31848 chr17 78071135 78071135 1 + C T CESC 78071136 + 78071116 78071156 41 GAGAAGCAGGAAAAGCTGTCGGTGATTCAGGCAGACTTCGA GAGAAGCAGGAAAAGCTGTTGGTGATTCAGGCAGACTTCGA < 41bp 0.483475986203107 0.703655634481308 NA NA prediction 0.407311268962616 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78071136 chr17:78071135 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_34635 0 0 0 0 2 CCDC40 chr17:78071044 3'AG 78071044 Downstream 92bp 31849 chr17 78071135 78071135 1 + C T CESC 78071136 + 78071116 78071156 41 GAGAAGCAGGAAAAGCTGTCGGTGATTCAGGCAGACTTCGA GAGAAGCAGGAAAAGCTGTTGGTGATTCAGGCAGACTTCGA < 41bp 0.483475986203107 0.703655634481308 NA NA prediction 0.407311268962616 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78071136 chr17:78071135 nonsynonymous SNV 0.004 1 20 hm7G_associated_SNPs_34635 0 0 0 0 2 CCDC40 chr17:78071202 5'GT 78071202 Upstream 68bp 31850 chr22 24724845 24724845 1 + C T UCEC 24724846 + 24724826 24724866 41 AACTCCAGGACCAAAAGCACGACATGGAAAGAGAAATAAAG AACTCCAGGACCAAAAGCATGACATGGAAAGAGAAATAAAG < 41bp 0.524426175454074 0.72808123314459 NA NA prediction 0.407310115381031 Functional Gain - SPECC1L ENSG00000100014;ENSG00000258555 CDS Human other chr22:24724846 chr22:24724845 synonymous SNV . 0 20 hm7G_associated_SNPs_34636 0 0 1 0 2 SPECC1L chr22:24724814 3'AG 24724814 Downstream 32bp 31851 chr22 24724845 24724845 1 + C T UCEC 24724846 + 24724826 24724866 41 AACTCCAGGACCAAAAGCACGACATGGAAAGAGAAATAAAG AACTCCAGGACCAAAAGCATGACATGGAAAGAGAAATAAAG < 41bp 0.524426175454074 0.72808123314459 NA NA prediction 0.407310115381031 Functional Gain - SPECC1L ENSG00000100014;ENSG00000258555 CDS Human other chr22:24724846 chr22:24724845 synonymous SNV . 0 20 hm7G_associated_SNPs_34636 0 0 1 0 2 SPECC1L chr22:24724887 5'GT 24724887 Upstream 43bp 31852 chr12 132329916 132329916 1 + C T UCEC 132329917 + 132329897 132329937 41 ACAGATGCACCGCTTCTGGCGGGGCCTGCCGCTGCACCTGG ACAGATGCACCGCTTCTGGTGGGGCCTGCCGCTGCACCTGG < 41bp 0.524319130519247 0.727971711865614 NA NA prediction 0.407305162692734 Functional Gain - MMP17 ENSG00000198598 CDS Human protein_coding chr12:132329917 chr12:132329916 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34637 0 0 1 0 2 MMP17 chr12:132329842 3'AG 132329842 Downstream 75bp 31853 chr12 132329916 132329916 1 + C T UCEC 132329917 + 132329897 132329937 41 ACAGATGCACCGCTTCTGGCGGGGCCTGCCGCTGCACCTGG ACAGATGCACCGCTTCTGGTGGGGCCTGCCGCTGCACCTGG < 41bp 0.524319130519247 0.727971711865614 NA NA prediction 0.407305162692734 Functional Gain - MMP17 ENSG00000198598 CDS Human protein_coding chr12:132329917 chr12:132329916 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34637 0 0 1 0 2 MMP17 chr12:132329994 5'GT 132329994 Upstream 79bp 31854 chr19 1529822 1529822 1 + G A UCEC 1529823 + 1529803 1529843 41 GCCTGGATGTAGGCCCCCCGGGTAGGAGCCGGCCCAGCCCC GCCTGGATGTAGGCCCCCCAGGTAGGAGCCGGCCCAGCCCC < 41bp 0.593826525991855 0.797478878832569 NA NA prediction 0.407304705681429 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529823 chr19:1529822 synonymous SNV . 0 20 hm7G_associated_SNPs_34638 0 0 0 0 2 PLK5 chr19:1529746 3'AG 1529746 Downstream 77bp 31855 chr19 1529822 1529822 1 + G A UCEC 1529823 + 1529803 1529843 41 GCCTGGATGTAGGCCCCCCGGGTAGGAGCCGGCCCAGCCCC GCCTGGATGTAGGCCCCCCAGGTAGGAGCCGGCCCAGCCCC < 41bp 0.593826525991855 0.797478878832569 NA NA prediction 0.407304705681429 Functional Gain - PLK5 ENSG00000185988 CDS Human protein_coding chr19:1529823 chr19:1529822 synonymous SNV . 0 20 hm7G_associated_SNPs_34638 0 0 0 0 2 PLK5 chr19:1529823 5'GT 1529823 Upstream 2bp 31856 chr17 26823581 26823581 1 + C T LUSC 26823582 + 26823562 26823602 41 ATGCCATCGTCTTCTCTTTCGGGGACCTCAAAGTGTTGGAT ATGCCATCGTCTTCTCTTTTGGGGACCTCAAAGTGTTGGAT < 41bp 0.528681779853522 0.732332825407733 NA NA prediction 0.407302091108422 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26823582 chr17:26823581 synonymous SNV . 0 20 hm7G_associated_SNPs_34639 0 0 0 0 1 SLC13A2 chr17:26823605 5'GT 26823605 Upstream 25bp 31857 chr8 24199172 24199172 1 + C T BLCA 24199173 + 24199153 24199193 41 TAATTTGCCCTGGAAAGGACGGATAGTGACTTTCCTGACAT TAATTTGCCCTGGAAAGGATGGATAGTGACTTTCCTGACAT < 41bp 0.515502409594065 0.719152907217658 NA NA prediction 0.407300995247186 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24199173 chr8:24199172 nonsynonymous SNV 0.314 2 20 hm7G_associated_SNPs_34640 0 0 0 1 2 ADAM28 chr8:24199111 3'AG 24199111 Downstream 62bp 31858 chr8 24199172 24199172 1 + C T BLCA 24199173 + 24199153 24199193 41 TAATTTGCCCTGGAAAGGACGGATAGTGACTTTCCTGACAT TAATTTGCCCTGGAAAGGATGGATAGTGACTTTCCTGACAT < 41bp 0.515502409594065 0.719152907217658 NA NA prediction 0.407300995247186 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24199173 chr8:24199172 nonsynonymous SNV 0.314 2 20 hm7G_associated_SNPs_34640 0 0 0 1 2 ADAM28 chr8:24199270 5'GT 24199270 Upstream 99bp 31859 chr11 1477639 1477639 1 + C T LGG 1477640 + 1477620 1477660 41 CGGGCCGAGTACAAGGCCACGGGGGGGCCAGCCGTGTTCCA CGGGCCGAGTACAAGGCCATGGGGGGGCCAGCCGTGTTCCA < 41bp 0.504901928969726 0.708550714820008 NA NA prediction 0.407297571700564 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1477640 chr11:1477639 nonsynonymous SNV 0.068 2 20 hm7G_associated_SNPs_34642 0 0 1 0 1 BRSK2 chr11:1477578 3'AG 1477578 Downstream 62bp 31860 chr18 74611016 74611016 1 + C T SKCM 74611017 + 74610997 74611037 41 TCACTGTGACAAAAAATTTCGAACCTCAGGCCATAGGAAGA TCACTGTGACAAAAAATTTTGAACCTCAGGCCATAGGAAGA < 41bp 0.519140281065549 0.722786706028282 NA NA prediction 0.407292849925465 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74611017 chr18:74611016 stopgain 0.998 1 20 hm7G_associated_SNPs_34644 0 0 1 0 1 ZNF236 chr18:74610975 3'AG 74610975 Downstream 42bp 31861 chr17 73739940 73739940 1 + C T UCEC 73739941 + 73739921 73739961 41 TGGCACCGCGCAGGGCAACCGGGTGAGGCTGCGCCACAGGG TGGCACCGCGCAGGGCAACTGGGTGAGGCTGCGCCACAGGG < 41bp 0.519971429748432 0.723617603318615 NA NA prediction 0.407292347140366 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73739941 chr17:73739940 nonsynonymous SNV 0.285 2 20 hm7G_associated_SNPs_34645 0 0 0 0 1 ITGB4 chr17:73739942 5'GT 73739942 Upstream 3bp 31862 chr6 26368874 26368874 1 + C T GBM 26368875 + 26368855 26368895 41 CTGCCCTGTCACCTGTTCCCGACCATGAGTGCAGAGACCAT CTGCCCTGTCACCTGTTCCTGACCATGAGTGCAGAGACCAT < 41bp 0.542031887333096 0.745677162407647 NA NA prediction 0.407290550149102 Functional Gain - BTN3A2 ENSG00000186470 CDS Human protein_coding chr6:26368875 chr6:26368874 nonsynonymous SNV 0.029 1 20 hm7G_associated_SNPs_34646 0 0 0 0 1 BTN3A2 chr6:26368793 3'AG 26368793 Downstream 82bp 31863 chr7 44746932 44746932 1 + G A COAD 44746933 + 44746913 44746953 41 GTGTATTATGACCTCACCCGGGAGCGCAAAGCACGCGACAT GTGTATTATGACCTCACCCAGGAGCGCAAAGCACGCGACAT < 41bp 0.534494771143475 0.738138918704472 NA NA prediction 0.407288295121994 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44746933 chr7:44746932 nonsynonymous SNV 0.775 1 20 hm7G_associated_SNPs_34648 0 0 1 0 1 OGDH chr7:44746987 5'GT 44746987 Upstream 56bp 31864 chr9 135042351 135042351 1 + C T COAD 135042352 + 135042332 135042372 41 CTGCCAGCCCAAGGTGATGCGCCTGAAGGACTACGTCAAGG CTGCCAGCCCAAGGTGATGTGCCTGAAGGACTACGTCAAGG < 41bp 0.521753929138126 0.725395424322566 NA NA prediction 0.40728299036888 Functional Gain - NTNG2 ENSG00000196358 CDS Human protein_coding chr9:135042352 chr9:135042351 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34650 0 0 0 0 1 NTNG2 chr9:135042431 5'GT 135042431 Upstream 81bp 31865 chr17 27024643 27024643 1 + C T COAD 27024644 + 27024624 27024664 41 CCTTCTTCCCACAGGAATTCGAAGATTTGGATGAGATTGTT CCTTCTTCCCACAGGAATTTGAAGATTTGGATGAGATTGTT < 41bp 0.542060902076191 0.745702094665582 NA NA prediction 0.407282385178781 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27024644 chr17:27024643 synonymous SNV . 0 20 hm7G_associated_SNPs_34651 0 0 1 0 1 SUPT6H chr17:27024638 3'AG 27024638 Downstream 6bp 31866 chr3 10219626 10219626 1 + C T UCEC 10219627 + 10219607 10219647 41 GCTGTGGTGGTGGGGCATGCGGCAGGCCACCGTCCAGCAAC GCTGTGGTGGTGGGGCATGTGGCAGGCCACCGTCCAGCAAC < 41bp 0.555842957301021 0.759484126534238 NA NA prediction 0.407282338466434 Functional Gain - IRAK2 ENSG00000134070 CDS Human protein_coding chr3:10219627 chr3:10219626 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34652 0 0 1 0 1 IRAK2 chr3:10219704 5'GT 10219704 Upstream 79bp 31867 chrX 67943847 67943847 1 + G A THYM 67943848 + 67943828 67943868 41 TCTCCCAGTCCCTGGATCCGGAACAACCTGTGCCAGAGTCG TCTCCCAGTCCCTGGATCCAGAACAACCTGTGCCAGAGTCG < 41bp 0.53562012433121 0.739260421135679 NA NA prediction 0.407280593608938 Functional Gain - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67943848 chrX:67943847 synonymous SNV . 0 20 hm7G_associated_SNPs_34653 0 0 1 0 1 STARD8 chrX:67943787 3'AG 67943787 Downstream 61bp 31868 chr10 115338440 115338440 1 + G A SKCM 115338441 + 115338421 115338461 41 TACCGAGGGAAAATGAATAGGACAGTCAACCAGCATGCGTG TACCGAGGGAAAATGAATAAGACAGTCAACCAGCATGCGTG < 41bp 0.513184352246474 0.716824488832097 NA NA prediction 0.407280273171245 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115338441 chr10:115338440 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_34654 0 0 0 0 1 HABP2 chr10:115338386 3'AG 115338386 Downstream 55bp 31869 chr2 28627045 28627045 1 + G A READ 28627046 + 28627026 28627066 41 ACGCCATCACGACCAGCCAGGACCTGCAGTGGATGGTGCAG ACGCCATCACGACCAGCCAAGACCTGCAGTGGATGGTGCAG < 41bp 0.552725500693312 0.756365552265271 NA NA prediction 0.407280103143919 Functional Gain - FOSL2 ENSG00000075426 CDS Human protein_coding chr2:28627046 chr2:28627045 synonymous SNV . 0 20 hm7G_associated_SNPs_34655 0 0 0 0 1 FOSL2 chr2:28626974 3'AG 28626974 Downstream 72bp 31870 chr19 7621349 7621349 1 + C T BLCA 7621350 + 7621330 7621370 41 TGTCCCTAGAGCATGACTTCGGTGCTGGAACCTGTGTTGGA TGTCCCTAGAGCATGACTTTGGTGCTGGAACCTGTGTTGGA < 41bp 0.521147248697217 0.724786348381915 NA NA prediction 0.407278199369396 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7621350 chr19:7621349 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_34656 0 0 1 0 1 PNPLA6 chr19:7621339 3'AG 7621339 Downstream 11bp 31871 chr9 136507382 136507382 1 + G A COAD 136507383 + 136507363 136507403 41 AGGAGCCGTTCCGGTCACTGGAGGCCATCAACGGCTCGGGC AGGAGCCGTTCCGGTCACTAGAGGCCATCAACGGCTCGGGC < 41bp 0.48124178388549 0.703636753303076 NA NA prediction 0.407273506606152 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136507383 chr9:136507382 synonymous SNV . 0 20 hm7G_associated_SNPs_34657 0 0 0 0 1 DBH chr9:136507329 3'AG 136507329 Downstream 54bp 31872 chr6 42146020 42146020 1 + C T UCEC 42146021 + 42146001 42146041 41 CCGCGCCCCTCGCCCAGGACGGCTACATTGATTTCATGGAG CCGCGCCCCTCGCCCAGGATGGCTACATTGATTTCATGGAG < 41bp 0.505588370146047 0.709225070325519 NA NA prediction 0.407273400358945 Functional Gain - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42146021 chr6:42146020 synonymous SNV . 0 20 hm7G_associated_SNPs_34658 0 0 0 0 1 GUCA1A chr6:42146018 3'AG 42146018 Downstream 3bp 31873 chr16 69964094 69964094 1 + C T STAD 69964095 + 69964075 69964115 41 ATACACCAGCGAGGGGGTGCGATACTTTGTGGACCACAATA ATACACCAGCGAGGGGGTGTGATACTTTGTGGACCACAATA < 41bp 0.488114038356446 0.70363658843822 NA NA prediction 0.407273176876439 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69964095 chr16:69964094 stopgain 0.994 1 20 hm7G_associated_SNPs_34659 0 0 0 0 2 WWP2 chr16:69964033 3'AG 69964033 Downstream 62bp 31874 chr16 69964094 69964094 1 + C T STAD 69964095 + 69964075 69964115 41 ATACACCAGCGAGGGGGTGCGATACTTTGTGGACCACAATA ATACACCAGCGAGGGGGTGTGATACTTTGTGGACCACAATA < 41bp 0.488114038356446 0.70363658843822 NA NA prediction 0.407273176876439 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69964095 chr16:69964094 stopgain 0.994 1 20 hm7G_associated_SNPs_34659 0 0 0 0 2 WWP2 chr16:69964161 5'GT 69964161 Upstream 68bp 31875 chr9 35381135 35381135 1 + C T UCEC 35381136 + 35381116 35381156 41 AGCCGTCTCAGGGGCTATCCGACTACAAATCAGTGTGGAGA AGCCGTCTCAGGGGCTATCTGACTACAAATCAGTGTGGAGA < 41bp 0.538887579645088 0.742522107384844 NA NA prediction 0.407269055479512 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35381136 chr9:35381135 stopgain 1.000 1 20 hm7G_associated_SNPs_34660 0 0 0 0 2 UNC13B chr9:35381097 3'AG 35381097 Downstream 39bp 31876 chr9 35381135 35381135 1 + C T UCEC 35381136 + 35381116 35381156 41 AGCCGTCTCAGGGGCTATCCGACTACAAATCAGTGTGGAGA AGCCGTCTCAGGGGCTATCTGACTACAAATCAGTGTGGAGA < 41bp 0.538887579645088 0.742522107384844 NA NA prediction 0.407269055479512 Functional Gain - UNC13B ENSG00000198722 CDS Human protein_coding chr9:35381136 chr9:35381135 stopgain 1.000 1 20 hm7G_associated_SNPs_34660 0 0 0 0 2 UNC13B chr9:35381212 5'GT 35381212 Upstream 78bp 31877 chr12 104140466 104140466 1 + C T LGG 104140467 + 104140447 104140487 41 ACCTGGATTATGAAGGTGACGGAATCACATGCACAGGTAAG ACCTGGATTATGAAGGTGATGGAATCACATGCACAGGTAAG < 41bp 0.509205514087949 0.712839999547616 NA NA prediction 0.407268970919335 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104140467 chr12:104140466 synonymous SNV . 0 20 hm7G_associated_SNPs_34661 0 0 0 0 2 STAB2 chr12:104140375 3'AG 104140375 Downstream 92bp 31878 chr12 104140466 104140466 1 + C T LGG 104140467 + 104140447 104140487 41 ACCTGGATTATGAAGGTGACGGAATCACATGCACAGGTAAG ACCTGGATTATGAAGGTGATGGAATCACATGCACAGGTAAG < 41bp 0.509205514087949 0.712839999547616 NA NA prediction 0.407268970919335 Functional Gain - STAB2 ENSG00000136011 CDS Human protein_coding chr12:104140467 chr12:104140466 synonymous SNV . 0 20 hm7G_associated_SNPs_34661 0 0 0 0 2 STAB2 chr12:104140482 5'GT 104140482 Upstream 17bp 31879 chr20 2592911 2592911 1 + C T LGG 2592912 + 2592892 2592932 41 ACAACTCTTCTGGTTGGAACGAGAGTGTCCCCCGACCACCC ACAACTCTTCTGGTTGGAATGAGAGTGTCCCCCGACCACCC < 41bp 0.531567260357756 0.735200314264283 NA NA prediction 0.407266107813053 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2592912 chr20:2592911 synonymous SNV . 0 20 hm7G_associated_SNPs_34662 0 0 0 0 2 TMC2 chr20:2592837 3'AG 2592837 Downstream 75bp 31880 chr20 2592911 2592911 1 + C T LGG 2592912 + 2592892 2592932 41 ACAACTCTTCTGGTTGGAACGAGAGTGTCCCCCGACCACCC ACAACTCTTCTGGTTGGAATGAGAGTGTCCCCCGACCACCC < 41bp 0.531567260357756 0.735200314264283 NA NA prediction 0.407266107813053 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2592912 chr20:2592911 synonymous SNV . 0 20 hm7G_associated_SNPs_34662 0 0 0 0 2 TMC2 chr20:2592986 5'GT 2592986 Upstream 76bp 31881 chr1 213436142 213436142 1 + C T LUSC 213436143 + 213436123 213436163 41 ATGTGTCTCTGAAGAGGCTCGCTCACTCATTCAACAGGTAA ATGTGTCTCTGAAGAGGCTTGCTCACTCATTCAACAGGTAA < 41bp 0.509686566133207 0.713319239481106 NA NA prediction 0.407265346695799 Functional Gain - RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213436143 chr1:213436142 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34663 0 0 1 0 2 RPS6KC1 chr1:213436064 3'AG 213436064 Downstream 79bp 31882 chr1 213436142 213436142 1 + C T LUSC 213436143 + 213436123 213436163 41 ATGTGTCTCTGAAGAGGCTCGCTCACTCATTCAACAGGTAA ATGTGTCTCTGAAGAGGCTTGCTCACTCATTCAACAGGTAA < 41bp 0.509686566133207 0.713319239481106 NA NA prediction 0.407265346695799 Functional Gain - RPS6KC1 ENSG00000136643 CDS Human protein_coding chr1:213436143 chr1:213436142 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34663 0 0 1 0 2 RPS6KC1 chr1:213436159 5'GT 213436159 Upstream 18bp 31883 chr8 59345764 59345764 1 + C T UCEC 59345765 + 59345745 59345785 41 GGGTAGTTCTTTTTGTAAGCGGTCTGAATATATCTATGGAG GGGTAGTTCTTTTTGTAAGTGGTCTGAATATATCTATGGAG < 41bp 0.535763904639295 0.739395946129583 NA NA prediction 0.407264082980576 Functional Gain - UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59345765 chr8:59345764 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_34665 0 0 1 0 2 UBXN2B chr8:59345719 3'AG 59345719 Downstream 46bp 31884 chr8 59345764 59345764 1 + C T UCEC 59345765 + 59345745 59345785 41 GGGTAGTTCTTTTTGTAAGCGGTCTGAATATATCTATGGAG GGGTAGTTCTTTTTGTAAGTGGTCTGAATATATCTATGGAG < 41bp 0.535763904639295 0.739395946129583 NA NA prediction 0.407264082980576 Functional Gain - UBXN2B ENSG00000215114 CDS Human protein_coding chr8:59345765 chr8:59345764 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_34665 0 0 1 0 2 UBXN2B chr8:59345802 5'GT 59345802 Upstream 39bp 31885 chr22 35730410 35730410 1 + C T UCEC 35730411 + 35730391 35730431 41 TGACATGTTTGCGCTGACACGGGGCAGCTCACTGGCTGACC TGACATGTTTGCGCTGACATGGGGCAGCTCACTGGCTGACC < 41bp 0.516659571662718 0.720288834224083 NA NA prediction 0.40725852512273 Functional Gain - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35730411 chr22:35730410 nonsynonymous SNV 0.879 4 20 hm7G_associated_SNPs_34666 0 0 1 0 1 TOM1 chr22:35730321 3'AG 35730321 Downstream 90bp 31886 chr5 177548554 177548554 1 + C T UCEC 177548555 + 177548535 177548575 41 GAACTGGCCCAGAAGCTGGCGGAGATCTTCAGTCTGAAGAC GAACTGGCCCAGAAGCTGGTGGAGATCTTCAGTCTGAAGAC < 41bp 0.515323924663982 0.718952863776236 NA NA prediction 0.407257878224509 Functional Gain - N4BP3 ENSG00000145911 CDS Human protein_coding chr5:177548555 chr5:177548554 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_34668 0 0 0 0 1 N4BP3 chr5:177548475 3'AG 177548475 Downstream 80bp 31887 chr10 89503153 89503153 1 + C T rs374301331 89503154 + 89503134 89503174 41 GGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGCC GGTGTTTGCATTCCAGTTGTGCAATCCTGTCCACAATGGCC < 41bp 0.539235690463433 0.742860985900037 NA NA prediction 0.407250590873207 Functional Gain - PAPSS2 ENSG00000198682 CDS Human protein_coding chr10:89503154 chr10:89503153 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_34669 0 0 0 0 1 PAPSS2 chr10:89503130 3'AG 89503130 Downstream 24bp 31888 chr13 39358893 39358893 1 + C T HNSC 39358894 + 39358874 39358914 41 TGCCCATGGGGGGAAGAATCGGATCAGAGTTCCCAGGGGCT TGCCCATGGGGGGAAGAATTGGATCAGAGTTCCCAGGGGCT < 41bp 0.515749250394423 0.719374031884493 NA NA prediction 0.40724956298014 Functional Gain - FREM2 ENSG00000150893 CDS Human protein_coding chr13:39358894 chr13:39358893 synonymous SNV . 0 20 hm7G_associated_SNPs_34670 0 0 0 0 1 FREM2 chr13:39358945 5'GT 39358945 Upstream 53bp 31889 chr11 67223230 67223230 1 + C T LIHC 67223231 + 67223211 67223251 41 ACGCTGCTCAGAGGACATACGGGCCCCTGCTCAATCGAGTC ACGCTGCTCAGAGGACATATGGGCCCCTGCTCAATCGAGTC < 41bp 0.502011816302302 0.705636328620075 NA NA prediction 0.407249024635546 Functional Gain - CABP4 ENSG00000175544 CDS Human protein_coding chr11:67223231 chr11:67223230 synonymous SNV . 0 20 hm7G_associated_SNPs_34671 0 0 0 0 2 CABP4 chr11:67223180 3'AG 67223180 Downstream 51bp 31890 chr11 67223230 67223230 1 + C T LIHC 67223231 + 67223211 67223251 41 ACGCTGCTCAGAGGACATACGGGCCCCTGCTCAATCGAGTC ACGCTGCTCAGAGGACATATGGGCCCCTGCTCAATCGAGTC < 41bp 0.502011816302302 0.705636328620075 NA NA prediction 0.407249024635546 Functional Gain - CABP4 ENSG00000175544 CDS Human protein_coding chr11:67223231 chr11:67223230 synonymous SNV . 0 20 hm7G_associated_SNPs_34671 0 0 0 0 2 CABP4 chr11:67223260 5'GT 67223260 Upstream 31bp 31891 chr6 25600615 25600615 1 + C T COAD 25600616 + 25600596 25600636 41 AAAGAAAAAGCGAGATTCTCGGAAAAGTAGTGGCTTTCTCA AAAGAAAAAGCGAGATTCTTGGAAAAGTAGTGGCTTTCTCA < 41bp 0.507378950802719 0.711003259492942 NA NA prediction 0.407248617380446 Functional Gain - CARMIL1 ENSG00000079691 CDS Human protein_coding chr6:25600616 chr6:25600615 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_34672 0 0 0 0 1 CARMIL1 chr6:25600542 3'AG 25600542 Downstream 74bp 31892 chr16 8862762 8862762 1 + C T rs201397255 8862763 + 8862743 8862783 41 GCCCATCGCACCGTTCCCACGGCTGAAATACCCTCTGGAAG GCCCATCGCACCGTTCCCATGGCTGAAATACCCTCTGGAAG < 41bp 0.55975726799486 0.763379677124087 NA NA prediction 0.407244818258452 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8862763 chr16:8862762 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34673 0 0 0 0 2 ABAT chr16:8862682 3'AG 8862682 Downstream 81bp 31893 chr16 8862762 8862762 1 + C T rs201397255 8862763 + 8862743 8862783 41 GCCCATCGCACCGTTCCCACGGCTGAAATACCCTCTGGAAG GCCCATCGCACCGTTCCCATGGCTGAAATACCCTCTGGAAG < 41bp 0.55975726799486 0.763379677124087 NA NA prediction 0.407244818258452 Functional Gain - ABAT ENSG00000183044 CDS Human protein_coding chr16:8862763 chr16:8862762 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34673 0 0 0 0 2 ABAT chr16:8862830 5'GT 8862830 Upstream 69bp 31894 chr8 1514042 1514042 1 + C T STAD 1514043 + 1514023 1514063 41 AAGTCCATCGGACAGAGACCGCTTGGAGAGCACCAGACGTA AAGTCCATCGGACAGAGACTGCTTGGAGAGCACCAGACGTA < 41bp 0.534019417083304 0.737641623131254 NA NA prediction 0.407244412095899 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1514043 chr8:1514042 nonsynonymous SNV 0.040 2 20 hm7G_associated_SNPs_34674 0 0 0 0 1 DLGAP2 chr8:1514060 5'GT 1514060 Upstream 19bp 31895 chr5 54624634 54624634 1 + C T UCEC 54624635 + 54624615 54624655 41 CAGCGGGAAAAACAGTATGCGCCGAGTGAGTAGCTTCCTTT CAGCGGGAAAAACAGTATGTGCCGAGTGAGTAGCTTCCTTT < 41bp 0.492701636010221 0.703622003666162 NA NA prediction 0.407244007332325 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54624635 chr5:54624634 synonymous SNV . 0 20 hm7G_associated_SNPs_34675 0 0 1 0 1 SKIV2L2 chr5:54624639 5'GT 54624639 Upstream 6bp 31896 chr22 24919670 24919670 1 + C T COAD 24919671 + 24919651 24919691 41 TCCTGGGCTGTCCCGTAGCCGGGATGGACTGCTAGTTGCTA TCCTGGGCTGTCCCGTAGCTGGGATGGACTGCTAGTTGCTA < 41bp 0.49473416604478 0.703620702198741 NA NA prediction 0.407241404397482 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919671 chr22:24919670 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_34676 0 0 1 0 2 UPB1 chr22:24919587 3'AG 24919587 Downstream 84bp 31897 chr22 24919670 24919670 1 + C T COAD 24919671 + 24919651 24919691 41 TCCTGGGCTGTCCCGTAGCCGGGATGGACTGCTAGTTGCTA TCCTGGGCTGTCCCGTAGCTGGGATGGACTGCTAGTTGCTA < 41bp 0.49473416604478 0.703620702198741 NA NA prediction 0.407241404397482 Functional Gain - UPB1 ENSG00000100024 CDS Human protein_coding chr22:24919671 chr22:24919670 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_34676 0 0 1 0 2 UPB1 chr22:24919741 5'GT 24919741 Upstream 72bp 31898 chr2 106497841 106497841 1 + C T UCEC 106497842 + 106497822 106497862 41 GCGTCCCCCACGCCCAGCACGGACGCCGAGTACCCCGCCAA GCGTCCCCCACGCCCAGCATGGACGCCGAGTACCCCGCCAA < 41bp 0.515081559868131 0.718702079026578 NA NA prediction 0.407241038316894 Functional Gain - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106497842 chr2:106497841 nonsynonymous SNV 0.982 2 20 hm7G_associated_SNPs_34677 0 0 1 0 1 NCK2 chr2:106497784 3'AG 106497784 Downstream 58bp 31899 chr22 40802122 40802122 1 + C T LUSC 40802123 + 40802103 40802143 41 ACTGGTTCCTCACGGCCTTCGCCAGCGTGGTGGACATCAAG ACTGGTTCCTCACGGCCTTTGCCAGCGTGGTGGACATCAAG < 41bp 0.492478262765063 0.703619070834688 NA NA prediction 0.407238141669377 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40802123 chr22:40802122 synonymous SNV . 0 20 hm7G_associated_SNPs_34680 0 0 1 0 1 SGSM3 chr22:40802082 3'AG 40802082 Downstream 41bp 31900 chrX 153696199 153696199 1 + G A COAD 153696200 + 153696180 153696220 41 CGGCCATGATGGGGCTGGCGGCGGGGGGTGGGCTCCTGCTG CGGCCATGATGGGGCTGGCAGCGGGGGGTGGGCTCCTGCTG < 41bp 0.575934777682914 0.77955380854326 NA NA prediction 0.407238061720692 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696200 chrX:153696199 synonymous SNV . 0 20 hm7G_associated_SNPs_34681 0 0 0 0 1 PLXNA3 chrX:153696110 3'AG 153696110 Downstream 90bp 31901 chr22 25024112 25024112 1 + G A GBM 25024113 + 25024093 25024133 41 AGGACGGCCAGGTCCGGATGGTGGTGGGAGCTGCTGGGGGC AGGACGGCCAGGTCCGGATAGTGGTGGGAGCTGCTGGGGGC < 41bp 0.545562365629556 0.749181230938825 NA NA prediction 0.407237730618538 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25024113 chr22:25024112 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_34682 0 0 1 0 1 GGT1 chr22:25024048 3'AG 25024048 Downstream 65bp 31902 chr15 72642929 72642929 1 - G A COAD 72642928 - 72642908 72642948 41 TGAAGGAGGTCATTGAATACGCACGGCTCCGGGGTATCCGT TGAAGGAGGTCATTGAATATGCACGGCTCCGGGGTATCCGT < 41bp 0.537908364161014 0.741526277843647 NA NA prediction 0.407235827365266 Functional Gain - HEXA ENSG00000213614 CDS Human protein_coding chr15:72642928 chr15:72642929 synonymous SNV . 0 20 hm7G_associated_SNPs_34683 0 0 1 0 2 HEXA chr15:72642859 5'GT 72642859 Upstream 71bp 31903 chr15 72642929 72642929 1 - G A COAD 72642928 - 72642908 72642948 41 TGAAGGAGGTCATTGAATACGCACGGCTCCGGGGTATCCGT TGAAGGAGGTCATTGAATATGCACGGCTCCGGGGTATCCGT < 41bp 0.537908364161014 0.741526277843647 NA NA prediction 0.407235827365266 Functional Gain - HEXA ENSG00000213614 CDS Human protein_coding chr15:72642928 chr15:72642929 synonymous SNV . 0 20 hm7G_associated_SNPs_34683 0 0 1 0 2 HEXA chr15:72642991 3'AG 72642991 Downstream 63bp 31904 chr16 85689338 85689338 1 + C T COAD 85689339 + 85689319 85689359 41 CTTCTCTGCACAGGATGGACGACTCCTACTGCCTGTCTGCC CTTCTCTGCACAGGATGGATGACTCCTACTGCCTGTCTGCC < 41bp 0.49358051600876 0.703617786193208 NA NA prediction 0.407235572386417 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689339 chr16:85689338 synonymous SNV . 0 20 hm7G_associated_SNPs_34684 0 0 1 0 1 GSE1 chr16:85689332 3'AG 85689332 Downstream 7bp 31905 chr7 73731907 73731907 1 + G A COAD 73731908 + 73731888 73731928 41 CAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTCCA CAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCACTCCA < 41bp 0.465830949220268 0.703617603376894 NA NA prediction 0.407235206753788 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731908 chr7:73731907 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_34685 0 0 0 0 2 CLIP2 chr7:73731810 3'AG 73731810 Downstream 98bp 31906 chr7 73731907 73731907 1 + G A COAD 73731908 + 73731888 73731928 41 CAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTCCA CAGCGGCCTGAAGCCCCCCAGCCGTGGGGGGAAGCACTCCA < 41bp 0.465830949220268 0.703617603376894 NA NA prediction 0.407235206753788 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73731908 chr7:73731907 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_34685 0 0 0 0 2 CLIP2 chr7:73731997 5'GT 73731997 Upstream 91bp 31907 chr19 33697585 33697585 1 + C T UCEC 33697586 + 33697566 33697606 41 CATCCTATGGTCAGCTCATCGCCCAGGGCCTCATTCCACCC CATCCTATGGTCAGCTCATTGCCCAGGGCCTCATTCCACCC < 41bp 0.506522229588665 0.710138817242124 NA NA prediction 0.407233175306917 Functional Gain - LRP3 ENSG00000130881 CDS Human protein_coding chr19:33697586 chr19:33697585 synonymous SNV . 0 20 hm7G_associated_SNPs_34687 0 0 0 0 1 LRP3 chr19:33697507 3'AG 33697507 Downstream 79bp 31908 chr22 51177867 51177867 1 + G A UCEC 51177868 + 51177848 51177888 41 GCTTGCTGAATTCACGATGGGTGCTCACTGCTGCTCACTGC GCTTGCTGAATTCACGATGAGTGCTCACTGCTGCTCACTGC < 41bp 0.519463451597311 0.723077822117464 NA NA prediction 0.407228741040305 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51177868 chr22:51177867 stopgain 0.900 0 20 hm7G_associated_SNPs_34690 0 0 0 0 1 ACR chr22:51177902 5'GT 51177902 Upstream 36bp 31909 chr15 89719194 89719194 1 + C T CESC 89719195 + 89719175 89719215 41 AAGAGAAGGTCCTGTGCTGCGTCAGCGTGTGCCAGGGGTAC AAGAGAAGGTCCTGTGCTGTGTCAGCGTGTGCCAGGGGTAC < 41bp 0.506197312374435 0.709804702664431 NA NA prediction 0.407214780579993 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89719195 chr15:89719194 synonymous SNV . 0 20 hm7G_associated_SNPs_34700 0 0 1 0 1 ABHD2 chr15:89719226 5'GT 89719226 Upstream 33bp 31910 chr1 170961350 170961350 1 + G A UCEC 170961351 + 170961331 170961371 41 CATGTTCTCAGGCGAGCGTGGCCCCTCACGTGCTGAAGACA CATGTTCTCAGGCGAGCGTAGCCCCTCACGTGCTGAAGACA < 41bp 0.539308078101313 0.742914592261094 NA NA prediction 0.407213028319563 Functional Gain - MROH9 ENSG00000117501 CDS Human protein_coding chr1:170961351 chr1:170961350 synonymous SNV . 0 20 hm7G_associated_SNPs_34701 0 0 0 0 1 MROH9 chr1:170961305 3'AG 170961305 Downstream 46bp 31911 chr12 51126176 51126176 1 + C T SKCM 51126177 + 51126157 51126197 41 GATCAACCTCTCCTGCGTCCGGACCTGTGTGGTGGTGGCGG GATCAACCTCTCCTGCGTCTGGACCTGTGTGGTGGTGGCGG < 41bp 0.537446164358003 0.741051235638481 NA NA prediction 0.407210142560956 Functional Gain - DIP2B ENSG00000066084 CDS Human protein_coding chr12:51126177 chr12:51126176 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34703 0 0 1 0 1 DIP2B chr12:51126149 3'AG 51126149 Downstream 28bp 31912 chr9 97218572 97218572 1 + C T CESC 97218573 + 97218553 97218593 41 ATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCTC ATGTCCAGCATCACGTTTCTGGCAATCAGTGCCCTCGTCTC < 41bp 0.530126671461175 0.73372659823535 NA NA prediction 0.407199853548351 Functional Gain - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97218573 chr9:97218572 nonsynonymous SNV 0.247 4 20 hm7G_associated_SNPs_34706 0 0 1 0 2 MFSD14B chr9:97218522 3'AG 97218522 Downstream 51bp 31913 chr9 97218572 97218572 1 + C T CESC 97218573 + 97218553 97218593 41 ATGTCCAGCATCACGTTTCCGGCAATCAGTGCCCTCGTCTC ATGTCCAGCATCACGTTTCTGGCAATCAGTGCCCTCGTCTC < 41bp 0.530126671461175 0.73372659823535 NA NA prediction 0.407199853548351 Functional Gain - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97218573 chr9:97218572 nonsynonymous SNV 0.247 4 20 hm7G_associated_SNPs_34706 0 0 1 0 2 MFSD14B chr9:97218619 5'GT 97218619 Upstream 48bp 31914 chr20 31673890 31673890 1 + G A SKCM 31673891 + 31673871 31673911 41 CCAAGGTCCGGCTGACCATGGACCGCACGGGTTATCCTCGG CCAAGGTCCGGCTGACCATAGACCGCACGGGTTATCCTCGG < 41bp 0.548322824120497 0.751921590780709 NA NA prediction 0.407197533320424 Functional Gain - BPIFB4 ENSG00000186191 CDS Human protein_coding chr20:31673891 chr20:31673890 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_34707 0 0 0 0 1 BPIFB4 chr20:31673827 3'AG 31673827 Downstream 64bp 31915 chr17 72278079 72278079 1 + C T rs542439989 72278080 + 72278060 72278100 41 CTGAGCTGGCCGAGCAGTTCGTGGAGCGGAACCCAGTGGAC CTGAGCTGGCCGAGCAGTTTGTGGAGCGGAACCCAGTGGAC < 41bp 0.503292695247938 0.706889724089638 NA NA prediction 0.407194057683401 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72278080 chr17:72278079 synonymous SNV . 0 20 hm7G_associated_SNPs_34708 0 0 0 0 1 DNAI2 chr17:72278139 5'GT 72278139 Upstream 61bp 31916 chr22 42296430 42296430 1 + C T UCEC 42296431 + 42296411 42296451 41 AGAGTTCCTTCTGCCATTGCGAGAGGGCCAGTGGCCACCTA AGAGTTCCTTCTGCCATTGTGAGAGGGCCAGTGGCCACCTA < 41bp 0.539011178588739 0.742606290963256 NA NA prediction 0.407190224749033 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42296431 chr22:42296430 synonymous SNV . 0 20 hm7G_associated_SNPs_34709 0 0 1 0 2 SREBF2 chr22:42296334 3'AG 42296334 Downstream 97bp 31917 chr22 42296430 42296430 1 + C T UCEC 42296431 + 42296411 42296451 41 AGAGTTCCTTCTGCCATTGCGAGAGGGCCAGTGGCCACCTA AGAGTTCCTTCTGCCATTGTGAGAGGGCCAGTGGCCACCTA < 41bp 0.539011178588739 0.742606290963256 NA NA prediction 0.407190224749033 Functional Gain - SREBF2 ENSG00000198911 CDS Human protein_coding chr22:42296431 chr22:42296430 synonymous SNV . 0 20 hm7G_associated_SNPs_34709 0 0 1 0 2 SREBF2 chr22:42296502 5'GT 42296502 Upstream 73bp 31918 chr11 66807630 66807630 1 + C T UCEC 66807631 + 66807611 66807651 41 CTTCGAGTCCTGCTTCATGCGCGTCAGCCTGCTGCCGGACG CTTCGAGTCCTGCTTCATGTGCGTCAGCCTGCTGCCGGACG < 41bp 0.528288962855174 0.731882362060924 NA NA prediction 0.407186798411499 Functional Gain - SYT12 ENSG00000173227 CDS Human protein_coding chr11:66807631 chr11:66807630 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34712 0 0 0 0 1 SYT12 chr11:66807674 5'GT 66807674 Upstream 45bp 31919 chr1 206319160 206319160 1 + C T LUSC 206319161 + 206319141 206319181 41 AGAACTTCACTGTCATCTTCGACACTGGCTCCTCCAACCTC AGAACTTCACTGTCATCTTTGACACTGGCTCCTCCAACCTC < 41bp 0.529837677694451 0.733430920680888 NA NA prediction 0.407186485972874 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206319161 chr1:206319160 synonymous SNV . 0 20 hm7G_associated_SNPs_34713 0 0 0 0 2 CTSE chr1:206319101 3'AG 206319101 Downstream 60bp 31920 chr1 206319160 206319160 1 + C T LUSC 206319161 + 206319141 206319181 41 AGAACTTCACTGTCATCTTCGACACTGGCTCCTCCAACCTC AGAACTTCACTGTCATCTTTGACACTGGCTCCTCCAACCTC < 41bp 0.529837677694451 0.733430920680888 NA NA prediction 0.407186485972874 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206319161 chr1:206319160 synonymous SNV . 0 20 hm7G_associated_SNPs_34713 0 0 0 0 2 CTSE chr1:206319218 5'GT 206319218 Upstream 59bp 31921 chr3 93755545 93755545 1 + G T UCEC 93755546 + 93755526 93755566 41 CAGAGCAGCGTGCTCTTGAGGAACAAGAGAAACAAGAAAGA CAGAGCAGCGTGCTCTTGATGAACAAGAGAAACAAGAAAGA < 41bp 0.693561303941307 0.897152836093002 NA NA prediction 0.407183064303389 Functional Gain - ARL13B ENSG00000169379 CDS Human protein_coding chr3:93755546 chr3:93755545 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_34714 0 0 0 0 1 ARL13B chr3:93755598 5'GT 93755598 Upstream 54bp 31922 chr9 43861162 43861162 1 + G A COAD 43861163 + 43861143 43861183 41 GCGGAGCGCTGCGAGCAGCGGCTGGCTCTGCGCTGCGGGAC GCGGAGCGCTGCGAGCAGCAGCTGGCTCTGCGCTGCGGGAC < 41bp 0.488649811498366 0.70359138316112 NA NA prediction 0.407182766322241 Functional Gain - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861163 chr9:43861162 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_34715 0 0 0 0 1 CNTNAP3B chr9:43861206 5'GT 43861206 Upstream 45bp 31923 chrX 129054460 129054460 1 + G T COAD 129054461 + 129054441 129054481 41 AAGTCGTGAAGAAAGGAAAGGCCAAGAAAGCCCTAAAAGAG AAGTCGTGAAGAAAGGAAATGCCAAGAAAGCCCTAAAAGAG < 41bp 0.70505538482098 0.908646553826872 NA NA prediction 0.407182338011784 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129054461 chrX:129054460 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_34716 0 0 0 0 2 UTP14A chrX:129054433 3'AG 129054433 Downstream 28bp 31924 chrX 129054460 129054460 1 + G T COAD 129054461 + 129054441 129054481 41 AAGTCGTGAAGAAAGGAAAGGCCAAGAAAGCCCTAAAAGAG AAGTCGTGAAGAAAGGAAATGCCAAGAAAGCCCTAAAAGAG < 41bp 0.70505538482098 0.908646553826872 NA NA prediction 0.407182338011784 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129054461 chrX:129054460 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_34716 0 0 0 0 2 UTP14A chrX:129054556 5'GT 129054556 Upstream 97bp 31925 chr9 131847006 131847006 1 + G A UCEC 131847007 + 131846987 131847027 41 CCCTGTATTTGTCATCGTCGGTTTCGTGACCCTCATCATAT CCCTGTATTTGTCATCGTCAGTTTCGTGACCCTCATCATAT < 41bp 0.526717624953323 0.730308535817618 NA NA prediction 0.407181821728589 Functional Gain - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847007 chr9:131847006 nonsynonymous SNV 0.539 1 20 hm7G_associated_SNPs_34717 0 0 1 0 2 DOLPP1 chr9:131846947 3'AG 131846947 Downstream 60bp 31926 chr9 131847006 131847006 1 + G A UCEC 131847007 + 131846987 131847027 41 CCCTGTATTTGTCATCGTCGGTTTCGTGACCCTCATCATAT CCCTGTATTTGTCATCGTCAGTTTCGTGACCCTCATCATAT < 41bp 0.526717624953323 0.730308535817618 NA NA prediction 0.407181821728589 Functional Gain - DOLPP1 ENSG00000167130 CDS Human protein_coding chr9:131847007 chr9:131847006 nonsynonymous SNV 0.539 1 20 hm7G_associated_SNPs_34717 0 0 1 0 2 DOLPP1 chr9:131847047 5'GT 131847047 Upstream 42bp 31927 chr19 38774303 38774303 1 + G A SKCM 38774304 + 38774284 38774324 41 AAGGTGGTGGGCAGATGCCGGGCCTCCATGCCTAGGTGGTG AAGGTGGTGGGCAGATGCCAGGCCTCCATGCCTAGGTGGTG < 41bp 0.56190196301882 0.765491556323523 NA NA prediction 0.407179186609405 Functional Gain - SPINT2 ENSG00000167642 CDS Human protein_coding chr19:38774304 chr19:38774303 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_34719 0 0 1 0 1 SPINT2 chr19:38774267 3'AG 38774267 Downstream 37bp 31928 chr2 206614475 206614475 1 + G T COAD 206614476 + 206614456 206614496 41 GCCCACGGTAGAGACGCTGGGACCCACTGTGAAGAGCGAAG GCCCACGGTAGAGACGCTGTGACCCACTGTGAAGAGCGAAG < 41bp 0.350674393462818 0.703585622109794 NA NA prediction 0.407171244219588 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206614476 chr2:206614475 stopgain 0.683 0 20 hm7G_associated_SNPs_34723 0 0 0 0 2 NRP2 chr2:206614449 3'AG 206614449 Downstream 27bp 31929 chr2 206614475 206614475 1 + G T COAD 206614476 + 206614456 206614496 41 GCCCACGGTAGAGACGCTGGGACCCACTGTGAAGAGCGAAG GCCCACGGTAGAGACGCTGTGACCCACTGTGAAGAGCGAAG < 41bp 0.350674393462818 0.703585622109794 NA NA prediction 0.407171244219588 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206614476 chr2:206614475 stopgain 0.683 0 20 hm7G_associated_SNPs_34723 0 0 0 0 2 NRP2 chr2:206614565 5'GT 206614565 Upstream 91bp 31930 chr2 102788324 102788324 1 + G T UCEC 102788325 + 102788305 102788345 41 GACATTGCTTACTGGAAGTGGAATGGGTCAGTAATTGATGA GACATTGCTTACTGGAAGTTGAATGGGTCAGTAATTGATGA < 41bp 0.36750787448443 0.703583648707565 NA NA prediction 0.40716729741513 Functional Gain - IL1R1 ENSG00000115594 CDS Human protein_coding chr2:102788325 chr2:102788324 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_34724 0 0 0 0 2 IL1R1 chr2:102788261 3'AG 102788261 Downstream 64bp 31931 chr2 102788324 102788324 1 + G T UCEC 102788325 + 102788305 102788345 41 GACATTGCTTACTGGAAGTGGAATGGGTCAGTAATTGATGA GACATTGCTTACTGGAAGTTGAATGGGTCAGTAATTGATGA < 41bp 0.36750787448443 0.703583648707565 NA NA prediction 0.40716729741513 Functional Gain - IL1R1 ENSG00000115594 CDS Human protein_coding chr2:102788325 chr2:102788324 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_34724 0 0 0 0 2 IL1R1 chr2:102788378 5'GT 102788378 Upstream 55bp 31932 chr16 67006297 67006297 1 + C T SKCM 67006298 + 67006278 67006318 41 TTTCTATGAGTTCCAGCATCGACCCAGTTCTTTTGCGAAGA TTTCTATGAGTTCCAGCATTGACCCAGTTCTTTTGCGAAGA < 41bp 0.521290919003037 0.724871413767861 NA NA prediction 0.407160989529648 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:67006298 chr16:67006297 stopgain 0.454 0 20 hm7G_associated_SNPs_34728 0 0 1 0 1 CES3 chr16:67006259 3'AG 67006259 Downstream 39bp 31933 chr1 227172605 227172605 1 + G A COAD 227172606 + 227172586 227172626 41 TTGGATTTTGGGGCAACGCGGGAATATGACAGATCCTTCAC TTGGATTTTGGGGCAACGCAGGAATATGACAGATCCTTCAC < 41bp 0.494406757013846 0.703579779626464 NA NA prediction 0.407159559252928 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227172606 chr1:227172605 nonsynonymous SNV 0.357 3 20 hm7G_associated_SNPs_34729 0 0 1 0 2 COQ8A chr1:227172577 3'AG 227172577 Downstream 29bp 31934 chr1 227172605 227172605 1 + G A COAD 227172606 + 227172586 227172626 41 TTGGATTTTGGGGCAACGCGGGAATATGACAGATCCTTCAC TTGGATTTTGGGGCAACGCAGGAATATGACAGATCCTTCAC < 41bp 0.494406757013846 0.703579779626464 NA NA prediction 0.407159559252928 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227172606 chr1:227172605 nonsynonymous SNV 0.357 3 20 hm7G_associated_SNPs_34729 0 0 1 0 2 COQ8A chr1:227172642 5'GT 227172642 Upstream 38bp 31935 chr16 2503520 2503520 1 + C T LUSC 2503521 + 2503501 2503541 41 GCCTTCCTCAGCTCTCCCTCGGGGCGGAGAACCAAACGGTT GCCTTCCTCAGCTCTCCCTTGGGGCGGAGAACCAAACGGTT < 41bp 0.507404497317792 0.710983747955912 NA NA prediction 0.407158501276239 Functional Gain - CCNF ENSG00000162063 CDS Human protein_coding chr16:2503521 chr16:2503520 nonsynonymous SNV 0.089 2 20 hm7G_associated_SNPs_34730 0 0 0 0 1 CCNF chr16:2503538 5'GT 2503538 Upstream 19bp 31936 chrX 70342686 70342686 1 + C T UCEC 70342687 + 70342667 70342707 41 TCTTGACTCCCTTTGTAACCGAATCTTTGGATTGGGACCTA TCTTGACTCCCTTTGTAACTGAATCTTTGGATTGGGACCTA < 41bp 0.53144873532416 0.735027192430858 NA NA prediction 0.407156914213396 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70342687 chrX:70342686 stopgain 1.000 1 20 hm7G_associated_SNPs_34731 0 0 1 0 2 MED12 chrX:70342588 3'AG 70342588 Downstream 99bp 31937 chrX 70342686 70342686 1 + C T UCEC 70342687 + 70342667 70342707 41 TCTTGACTCCCTTTGTAACCGAATCTTTGGATTGGGACCTA TCTTGACTCCCTTTGTAACTGAATCTTTGGATTGGGACCTA < 41bp 0.53144873532416 0.735027192430858 NA NA prediction 0.407156914213396 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70342687 chrX:70342686 stopgain 1.000 1 20 hm7G_associated_SNPs_34731 0 0 1 0 2 MED12 chrX:70342724 5'GT 70342724 Upstream 39bp 31938 chr16 2200015 2200015 1 + C T UCEC 2200016 + 2199996 2200036 41 AAGGATGGTGCTTTCCTGGCGGGGACCTTCATCTCCACCGT AAGGATGGTGCTTTCCTGGTGGGGACCTTCATCTCCACCGT < 41bp 0.52667439869671 0.730252733564849 NA NA prediction 0.407156669736279 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2200016 chr16:2200015 nonsynonymous SNV 0.939 0 20 hm7G_associated_SNPs_34732 0 0 1 0 2 RAB26 chr16:2199942 3'AG 2199942 Downstream 74bp 31939 chr16 2200015 2200015 1 + C T UCEC 2200016 + 2199996 2200036 41 AAGGATGGTGCTTTCCTGGCGGGGACCTTCATCTCCACCGT AAGGATGGTGCTTTCCTGGTGGGGACCTTCATCTCCACCGT < 41bp 0.52667439869671 0.730252733564849 NA NA prediction 0.407156669736279 Functional Gain - RAB26 ENSG00000167964 CDS Human protein_coding chr16:2200016 chr16:2200015 nonsynonymous SNV 0.939 0 20 hm7G_associated_SNPs_34732 0 0 1 0 2 RAB26 chr16:2200052 5'GT 2200052 Upstream 38bp 31940 chr7 150732812 150732812 1 + C T rs17545756 150732813 + 150732793 150732833 41 AGGCCTCCGAAAATTGTCTCGCCAGTGTCAGGAGCAGGTAC AGGCCTCCGAAAATTGTCTTGCCAGTGTCAGGAGCAGGTAC < 41bp 0.543598498503807 0.747176200277048 NA NA prediction 0.407155403546483 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150732813 chr7:150732812 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34733 0 0 0 0 1 ABCB8 chr7:150732829 5'GT 150732829 Upstream 18bp 31941 chr7 150707755 150707755 1 + C T COAD 150707756 + 150707736 150707776 41 GAGGTGCTGGAGCAGTTCCCGTCGGTGGCGCTGCCTGCCCC GAGGTGCTGGAGCAGTTCCTGTCGGTGGCGCTGCCTGCCCC < 41bp 0.494526762828547 0.703577368639914 NA NA prediction 0.407154737279829 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150707756 chr7:150707755 nonsynonymous SNV 0.431 4 20 hm7G_associated_SNPs_34734 0 0 0 0 1 NOS3 chr7:150707685 3'AG 150707685 Downstream 71bp 31942 chr15 45444549 45444549 1 + C T GBM 45444550 + 45444530 45444570 41 CGTGGGAATCATCCTGTCGCGGGGCACAGCAGCCAGCATCT CGTGGGAATCATCCTGTCGTGGGGCACAGCAGCCAGCATCT < 41bp 0.490317712186672 0.703573568244863 NA NA prediction 0.407147136489725 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45444550 chr15:45444549 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_34735 0 0 0 0 1 DUOX1 chr15:45444484 3'AG 45444484 Downstream 66bp 31943 chr2 70043261 70043261 1 + G T LUSC 70043262 + 70043242 70043282 41 GAGGCTGGAGAGAAGAAATGGGGGACAGATGAGGTGAAATT GAGGCTGGAGAGAAGAAATTGGGGACAGATGAGGTGAAATT < 41bp 0.705088538768698 0.908661548990702 NA NA prediction 0.407146020444008 Functional Gain - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70043262 chr2:70043261 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34736 0 0 1 0 2 ANXA4 chr2:70043233 3'AG 70043233 Downstream 29bp 31944 chr2 70043261 70043261 1 + G T LUSC 70043262 + 70043242 70043282 41 GAGGCTGGAGAGAAGAAATGGGGGACAGATGAGGTGAAATT GAGGCTGGAGAGAAGAAATTGGGGACAGATGAGGTGAAATT < 41bp 0.705088538768698 0.908661548990702 NA NA prediction 0.407146020444008 Functional Gain - ANXA4 ENSG00000196975 CDS Human protein_coding chr2:70043262 chr2:70043261 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34736 0 0 1 0 2 ANXA4 chr2:70043326 5'GT 70043326 Upstream 66bp 31945 chr22 35734737 35734737 1 + G A rs139098897 35734738 + 35734718 35734758 41 AGCCCCCCAAGCAACAGACGGCCTGGCTGGAGCCCTGGACG AGCCCCCCAAGCAACAGACAGCCTGGCTGGAGCCCTGGACG < 41bp 0.580645912152769 0.784218024526743 NA NA prediction 0.407144224747947 Functional Gain - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35734738 chr22:35734737 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_34737 0 0 1 0 1 TOM1 chr22:35734781 5'GT 35734781 Upstream 45bp 31946 chr17 9580181 9580181 1 + G A UCEC 9580182 + 9580162 9580202 41 GATGGTTGCAGAGGAAGGAGGCGTCCCTGCAGATGAGGTGT GATGGTTGCAGAGGAAGGAAGCGTCCCTGCAGATGAGGTGT < 41bp 0.574107436731838 0.777679188317862 NA NA prediction 0.407143503172048 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9580182 chr17:9580181 nonsynonymous SNV 0.504 0 20 hm7G_associated_SNPs_34738 0 0 0 0 1 USP43 chr17:9580198 5'GT 9580198 Upstream 18bp 31947 chr9 132637709 132637709 1 + C T rs200207618 132637710 + 132637690 132637730 41 TCAACAAGTTCAACACCTTCGCGGAGCCAGGCCCCATCACC TCAACAAGTTCAACACCTTTGCGGAGCCAGGCCCCATCACC < 41bp 0.522042945923194 0.725613268188032 NA NA prediction 0.407140644529676 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132637710 chr9:132637709 synonymous SNV . 0 20 hm7G_associated_SNPs_34739 0 0 1 0 1 USP20 chr9:132637758 5'GT 132637758 Upstream 50bp 31948 chr6 43745252 43745252 1 + C T UCEC 43745253 + 43745233 43745273 41 GCAGCTACTGCCATCCAATCGAGACCCTGGTGGACATCTTC GCAGCTACTGCCATCCAATTGAGACCCTGGTGGACATCTTC < 41bp 0.514892521438455 0.71846160545851 NA NA prediction 0.407138168040109 Functional Gain - VEGFA ENSG00000112715 CDS Human protein_coding chr6:43745253 chr6:43745252 synonymous SNV . 0 20 hm7G_associated_SNPs_34741 0 0 1 0 1 VEGFA chr6:43745206 3'AG 43745206 Downstream 47bp 31949 chr2 27529141 27529141 1 + G A SKCM 27529142 + 27529122 27529162 41 AGCCAGGCTATGAGAGCATGGAGCAATTCACCGTAAGGGTG AGCCAGGCTATGAGAGCATAGAGCAATTCACCGTAAGGGTG < 41bp 0.504007758571103 0.707575407513157 NA NA prediction 0.407135297884107 Functional Gain - TRIM54 ENSG00000138100 CDS Human protein_coding chr2:27529142 chr2:27529141 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_34744 0 0 0 0 1 TRIM54 chr2:27529205 5'GT 27529205 Upstream 65bp 31950 chrX 38525449 38525449 1 + C T UCEC 38525450 + 38525430 38525470 41 CCTATATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCC CCTATATCTCCCTTATTGCTGAGAACTCCACAAATGCTCCC < 41bp 0.5515086291517 0.755075516337077 NA NA prediction 0.407133774370754 Functional Gain - TSPAN7 ENSG00000156298;ENSG00000250349 CDS Human other chrX:38525450 chrX:38525449 synonymous SNV . 0 20 hm7G_associated_SNPs_34745 0 0 1 0 1 TSPAN7 chrX:38525375 3'AG 38525375 Downstream 75bp 31951 chr1 156897380 156897380 1 + G A PAAD 156897381 + 156897361 156897401 41 ACGCTGCACAGCTGCAACCGGACCCTCGTCTCGCTCAACCT ACGCTGCACAGCTGCAACCAGACCCTCGTCTCGCTCAACCT < 41bp 0.477941879770028 0.703566802775837 NA NA prediction 0.407133605551674 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156897381 chr1:156897380 nonsynonymous SNV 0.733 0 20 hm7G_associated_SNPs_34746 0 0 0 0 2 LRRC71 chr1:156897288 3'AG 156897288 Downstream 93bp 31952 chr1 156897380 156897380 1 + G A PAAD 156897381 + 156897361 156897401 41 ACGCTGCACAGCTGCAACCGGACCCTCGTCTCGCTCAACCT ACGCTGCACAGCTGCAACCAGACCCTCGTCTCGCTCAACCT < 41bp 0.477941879770028 0.703566802775837 NA NA prediction 0.407133605551674 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156897381 chr1:156897380 nonsynonymous SNV 0.733 0 20 hm7G_associated_SNPs_34746 0 0 0 0 2 LRRC71 chr1:156897447 5'GT 156897447 Upstream 68bp 31953 chr17 56270463 56270463 1 + G A LUSC 56270464 + 56270444 56270484 41 CAGAGGCCAAGTTGCTGGTGGATGCTGCCTACAATTGGACC CAGAGGCCAAGTTGCTGGTAGATGCTGCCTACAATTGGACC < 41bp 0.486173847851601 0.703559907169445 NA NA prediction 0.407119814338891 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56270464 chr17:56270463 synonymous SNV . 0 20 hm7G_associated_SNPs_34748 0 0 0 0 2 EPX chr17:56270399 3'AG 56270399 Downstream 65bp 31954 chr17 56270463 56270463 1 + G A LUSC 56270464 + 56270444 56270484 41 CAGAGGCCAAGTTGCTGGTGGATGCTGCCTACAATTGGACC CAGAGGCCAAGTTGCTGGTAGATGCTGCCTACAATTGGACC < 41bp 0.486173847851601 0.703559907169445 NA NA prediction 0.407119814338891 Functional Gain - EPX ENSG00000121053 CDS Human protein_coding chr17:56270464 chr17:56270463 synonymous SNV . 0 20 hm7G_associated_SNPs_34748 0 0 0 0 2 EPX chr17:56270492 5'GT 56270492 Upstream 30bp 31955 chr16 3017852 3017852 1 + G A rs117373306 3017853 + 3017833 3017873 41 AAAGGGCCCCCGGCGCTGGGGGCTTCCAGGGGCCCCAGGAG AAAGGGCCCCCGGCGCTGGAGGCTTCCAGGGGCCCCAGGAG < 41bp 0.599074119382969 0.802634016470624 NA NA prediction 0.40711979417531 Functional Gain - KREMEN2 ENSG00000131650 CDS Human protein_coding chr16:3017853 chr16:3017852 nonsynonymous SNV 0.548 1 20 hm7G_associated_SNPs_34749 0 0 0 0 1 KREMEN2 chr16:3017811 3'AG 3017811 Downstream 42bp 31956 chr11 71209481 71209481 1 + C T LUAD 71209482 + 71209462 71209502 41 TCACACCCGCGTACCACGCCGAGAACTACAGCCCTGAGGAC TCACACCCGCGTACCACGCTGAGAACTACAGCCCTGAGGAC < 41bp 0.550175849055432 0.753735398996236 NA NA prediction 0.407119099881608 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209482 chr11:71209481 synonymous SNV . 0 20 hm7G_associated_SNPs_34750 0 0 1 0 2 NADSYN1 chr11:71209398 3'AG 71209398 Downstream 84bp 31957 chr11 71209481 71209481 1 + C T LUAD 71209482 + 71209462 71209502 41 TCACACCCGCGTACCACGCCGAGAACTACAGCCCTGAGGAC TCACACCCGCGTACCACGCTGAGAACTACAGCCCTGAGGAC < 41bp 0.550175849055432 0.753735398996236 NA NA prediction 0.407119099881608 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71209482 chr11:71209481 synonymous SNV . 0 20 hm7G_associated_SNPs_34750 0 0 1 0 2 NADSYN1 chr11:71209574 5'GT 71209574 Upstream 94bp 31958 chr11 71903300 71903300 1 + G A LUSC 71903301 + 71903281 71903321 41 GCTCAGACAAGGATTGCATGGGCCAGGACTGAGCTTCTCAA GCTCAGACAAGGATTGCATAGGCCAGGACTGAGCTTCTCAA < 41bp 0.556743763689851 0.760301236288983 NA NA prediction 0.407114945198264 Functional Gain - FOLR1 ENSG00000110195 CDS Human antisense chr11:71903301 chr11:71903300 stopgain 0.000 0 20 hm7G_associated_SNPs_34752 0 0 0 0 2 FOLR1 chr11:71903210 3'AG 71903210 Downstream 91bp 31959 chr11 71903300 71903300 1 + G A LUSC 71903301 + 71903281 71903321 41 GCTCAGACAAGGATTGCATGGGCCAGGACTGAGCTTCTCAA GCTCAGACAAGGATTGCATAGGCCAGGACTGAGCTTCTCAA < 41bp 0.556743763689851 0.760301236288983 NA NA prediction 0.407114945198264 Functional Gain - FOLR1 ENSG00000110195 CDS Human protein_coding chr11:71903301 chr11:71903300 stopgain 0.000 0 20 hm7G_associated_SNPs_34752 0 0 0 0 2 FOLR1 chr11:71903385 5'GT 71903385 Upstream 86bp 31960 chr15 48058129 48058129 1 + C T HNSC 48058130 + 48058110 48058150 41 AGTTGGATAAAGATCACCACGCTTTATATGTGGCGTTCTCT AGTTGGATAAAGATCACCATGCTTTATATGTGGCGTTCTCT < 41bp 0.525450021796975 0.729004858713988 NA NA prediction 0.407109673834026 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48058130 chr15:48058129 synonymous SNV . 0 20 hm7G_associated_SNPs_34755 0 0 0 0 2 SEMA6D chr15:48058066 3'AG 48058066 Downstream 64bp 31961 chr15 48058129 48058129 1 + C T HNSC 48058130 + 48058110 48058150 41 AGTTGGATAAAGATCACCACGCTTTATATGTGGCGTTCTCT AGTTGGATAAAGATCACCATGCTTTATATGTGGCGTTCTCT < 41bp 0.525450021796975 0.729004858713988 NA NA prediction 0.407109673834026 Functional Gain - SEMA6D ENSG00000137872 CDS Human protein_coding chr15:48058130 chr15:48058129 synonymous SNV . 0 20 hm7G_associated_SNPs_34755 0 0 0 0 2 SEMA6D chr15:48058206 5'GT 48058206 Upstream 78bp 31962 chr16 4723552 4723552 1 + C T rs199504452 4723553 + 4723533 4723573 41 AGTGTGTGGTGTGCCTGTCCGACCTGCGGGACACGCTGATC AGTGTGTGGTGTGCCTGTCTGACCTGCGGGACACGCTGATC < 41bp 0.53129814783886 0.734850130026961 NA NA prediction 0.407103964376202 Functional Gain - MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4723553 chr16:4723552 synonymous SNV . 0 20 hm7G_associated_SNPs_34757 0 0 1 0 1 MGRN1 chr16:4723499 3'AG 4723499 Downstream 54bp 31963 chr14 93043720 93043720 1 + C T rs144699416 93043721 + 93043701 93043741 41 TCAGATGTTCCTGGTTCGCCGGGACAGCAGCTCGAAGCAGC TCAGATGTTCCTGGTTCGCTGGGACAGCAGCTCGAAGCAGC < 41bp 0.550310108335823 0.753861264806017 NA NA prediction 0.407102312940389 Functional Gain - RIN3 ENSG00000100599 CDS Human protein_coding chr14:93043721 chr14:93043720 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_34758 0 0 0 0 1 RIN3 chr14:93043705 3'AG 93043705 Downstream 16bp 31964 chr10 104159861 104159861 1 + C T UCEC 104159862 + 104159842 104159882 41 TGCACCTAGCCATCATCCACGGGCAGACCAGTGTCATTGAG TGCACCTAGCCATCATCCATGGGCAGACCAGTGTCATTGAG < 41bp 0.488799504651206 0.703550445156894 NA NA prediction 0.407100890313787 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104159862 chr10:104159861 synonymous SNV . 0 20 hm7G_associated_SNPs_34759 0 0 0 0 2 NFKB2 chr10:104159837 3'AG 104159837 Downstream 25bp 31965 chr10 104159861 104159861 1 + C T UCEC 104159862 + 104159842 104159882 41 TGCACCTAGCCATCATCCACGGGCAGACCAGTGTCATTGAG TGCACCTAGCCATCATCCATGGGCAGACCAGTGTCATTGAG < 41bp 0.488799504651206 0.703550445156894 NA NA prediction 0.407100890313787 Functional Gain - NFKB2 ENSG00000077150 CDS Human protein_coding chr10:104159862 chr10:104159861 synonymous SNV . 0 20 hm7G_associated_SNPs_34759 0 0 0 0 2 NFKB2 chr10:104159951 5'GT 104159951 Upstream 91bp 31966 chr21 30505728 30505728 1 + C T UCEC 30505729 + 30505709 30505749 41 TCGCCTTTAGCCTCAATGACGCCTCAGGTATACTCTGCTCT TCGCCTTTAGCCTCAATGATGCCTCAGGTATACTCTGCTCT < 41bp 0.497553561508534 0.703549365572846 NA NA prediction 0.407098731145692 Functional Gain - MAP3K7CL ENSG00000156265 CDS Human protein_coding chr21:30505729 chr21:30505728 synonymous SNV . 0 20 hm7G_associated_SNPs_34760 0 0 0 0 1 MAP3K7CL chr21:30505735 5'GT 30505735 Upstream 8bp 31967 chr10 71020984 71020984 1 + G A SKCM 71020985 + 71020965 71021005 41 CAGGGTCTCCTCTTCCGAGGGCAGATTTCAGAGCGTCTCCG CAGGGTCTCCTCTTCCGAGAGCAGATTTCAGAGCGTCTCCG < 41bp 0.537249951267364 0.740796492296673 NA NA prediction 0.407093082058619 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71020985 chr10:71020984 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34763 0 0 0 0 2 HKDC1 chr10:71020895 3'AG 71020895 Downstream 90bp 31968 chr10 71020984 71020984 1 + G A SKCM 71020985 + 71020965 71021005 41 CAGGGTCTCCTCTTCCGAGGGCAGATTTCAGAGCGTCTCCG CAGGGTCTCCTCTTCCGAGAGCAGATTTCAGAGCGTCTCCG < 41bp 0.537249951267364 0.740796492296673 NA NA prediction 0.407093082058619 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71020985 chr10:71020984 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34763 0 0 0 0 2 HKDC1 chr10:71021050 5'GT 71021050 Upstream 67bp 31969 chr2 98986519 98986519 1 + C T rs148593890 98986520 + 98986500 98986540 41 CAGACCGAGATCTCAATCGCGCTGAAAATGGCCTCAGCAGG CAGACCGAGATCTCAATCGTGCTGAAAATGGCCTCAGCAGG < 41bp 0.507713287505452 0.711259172614219 NA NA prediction 0.407091770217534 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98986520 chr2:98986519 synonymous SNV . 0 20 hm7G_associated_SNPs_34764 0 0 0 0 1 CNGA3 chr2:98986539 5'GT 98986539 Upstream 21bp 31970 chr12 109703053 109703053 1 + C T ESCA 109703054 + 109703034 109703074 41 TATCCAGTCCATGCTGCGTCGCTGGTTCGTGGAGACGGAGG TATCCAGTCCATGCTGCGTTGCTGGTTCGTGGAGACGGAGG < 41bp 0.516824749854536 0.720369453259797 NA NA prediction 0.407089406810521 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109703054 chr12:109703053 nonsynonymous SNV 0.946 3 20 hm7G_associated_SNPs_34765 0 0 0 0 1 ACACB chr12:109703085 5'GT 109703085 Upstream 33bp 31971 chr18 77208834 77208834 1 + C T ESCA 77208835 + 77208815 77208855 41 CTGCAGCTTTTCATTGGGACGGCGGACGACCGCCTGCTGCG CTGCAGCTTTTCATTGGGATGGCGGACGACCGCCTGCTGCG < 41bp 0.493051093446203 0.703543788362163 NA NA prediction 0.407087576724327 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77208835 chr18:77208834 nonsynonymous SNV 0.325 4 20 hm7G_associated_SNPs_34767 0 0 0 0 1 NFATC1 chr18:77208782 3'AG 77208782 Downstream 53bp 31972 chr1 22852723 22852723 1 + C T ACC 22852724 + 22852704 22852744 41 ACCCCAGAGCCGGTGGCCCCGACAGAGCAGGTGATCACTTT ACCCCAGAGCCGGTGGCCCTGACAGAGCAGGTGATCACTTT < 41bp 0.499017383919161 0.703543728907489 NA NA prediction 0.407087457814978 Functional Gain - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22852724 chr1:22852723 nonsynonymous SNV 0.530 1 20 hm7G_associated_SNPs_34768 0 0 1 0 1 ZBTB40 chr1:22852695 3'AG 22852695 Downstream 29bp 31973 chr17 33496870 33496870 1 + C T rs6505446 33496871 + 33496851 33496891 41 CTCAGGGACTCTGTAAGCTCGGCTCTGCAGGTGGCACAGAC CTCAGGGACTCTGTAAGCTTGGCTCTGCAGGTGGCACAGAC < 41bp 0.549353431621917 0.752896205831772 NA NA prediction 0.40708554841971 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496871 chr17:33496870 synonymous SNV . 0 20 hm7G_associated_SNPs_34769 0 0 0 0 2 UNC45B chr17:33496856 3'AG 33496856 Downstream 15bp 31974 chr17 33496870 33496870 1 + C T rs6505446 33496871 + 33496851 33496891 41 CTCAGGGACTCTGTAAGCTCGGCTCTGCAGGTGGCACAGAC CTCAGGGACTCTGTAAGCTTGGCTCTGCAGGTGGCACAGAC < 41bp 0.549353431621917 0.752896205831772 NA NA prediction 0.40708554841971 Functional Gain - UNC45B ENSG00000141161 CDS Human protein_coding chr17:33496871 chr17:33496870 synonymous SNV . 0 20 hm7G_associated_SNPs_34769 0 0 0 0 2 UNC45B chr17:33496950 5'GT 33496950 Upstream 81bp 31975 chr15 69677202 69677202 1 + C T BLCA 69677203 + 69677183 69677223 41 ACTTCCTGGACTATGGTGCCGTCAACCTCTTCAGCCTGGGT ACTTCCTGGACTATGGTGCTGTCAACCTCTTCAGCCTGGGT < 41bp 0.509955387249345 0.713495952295687 NA NA prediction 0.407081130092685 Functional Gain - PAQR5 ENSG00000137819 CDS Human protein_coding chr15:69677203 chr15:69677202 synonymous SNV . 0 20 hm7G_associated_SNPs_34770 0 0 1 0 1 PAQR5 chr15:69677221 5'GT 69677221 Upstream 20bp 31976 chr4 3446685 3446685 1 + G A rs202090816 3446686 + 3446666 3446706 41 TGGACTCCGTGGGCGCCGCGGCCCTGCTGGGCCTGGGCCCC TGGACTCCGTGGGCGCCGCAGCCCTGCTGGGCCTGGGCCCC < 41bp 0.466163176459297 0.703540341908683 NA NA prediction 0.407080683817365 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3446686 chr4:3446685 synonymous SNV . 0 20 hm7G_associated_SNPs_34771 0 0 1 0 1 HGFAC chr4:3446720 5'GT 3446720 Upstream 36bp 31977 chr5 170232795 170232795 1 + G A STAD 170232796 + 170232776 170232816 41 CGTGGACTGGAACACCTGCGGCTTGCTCAGTACACCATAGA CGTGGACTGGAACACCTGCAGCTTGCTCAGTACACCATAGA < 41bp 0.503731944557809 0.707271448875296 NA NA prediction 0.407079008634975 Functional Gain - GABRP ENSG00000094755 CDS Human protein_coding chr5:170232796 chr5:170232795 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_34772 0 0 0 0 2 GABRP chr5:170232720 3'AG 170232720 Downstream 76bp 31978 chr5 170232795 170232795 1 + G A STAD 170232796 + 170232776 170232816 41 CGTGGACTGGAACACCTGCGGCTTGCTCAGTACACCATAGA CGTGGACTGGAACACCTGCAGCTTGCTCAGTACACCATAGA < 41bp 0.503731944557809 0.707271448875296 NA NA prediction 0.407079008634975 Functional Gain - GABRP ENSG00000094755 CDS Human protein_coding chr5:170232796 chr5:170232795 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_34772 0 0 0 0 2 GABRP chr5:170232857 5'GT 170232857 Upstream 63bp 31979 chr7 128494069 128494069 1 + C T COAD 128494070 + 128494050 128494090 41 TGCCCAGGAGCGCCTGACACGCACCTTCACACGCAGCAGCC TGCCCAGGAGCGCCTGACATGCACCTTCACACGCAGCAGCC < 41bp 0.4904341401286 0.703539270904705 NA NA prediction 0.407078541809409 Functional Gain - FLNC ENSG00000128591 CDS Human protein_coding chr7:128494070 chr7:128494069 nonsynonymous SNV 0.893 4 20 hm7G_associated_SNPs_34773 0 0 1 0 1 FLNC chr7:128494028 3'AG 128494028 Downstream 42bp 31980 chr17 61561748 61561748 1 + C T LUAD 61561749 + 61561729 61561769 41 AGGTGCTGAAGGACATGGTCGGCTTAGATGCCCTGGATGCC AGGTGCTGAAGGACATGGTTGGCTTAGATGCCCTGGATGCC < 41bp 0.538847855861118 0.742386249722618 NA NA prediction 0.407076787723002 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61561749 chr17:61561748 synonymous SNV . 0 20 hm7G_associated_SNPs_34774 0 0 0 0 1 ACE chr17:61561691 3'AG 61561691 Downstream 58bp 31981 chr17 7907439 7907439 1 + C T UCEC 7907440 + 7907420 7907460 41 CCTGCGCAGGGCTCAAGAGCGCCGCGAGCTGCCCTCTGACC CCTGCGCAGGGCTCAAGAGTGCCGCGAGCTGCCCTCTGACC < 41bp 0.510465013167537 0.714000272910517 NA NA prediction 0.40707051948596 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7907440 chr17:7907439 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_34776 0 0 0 0 1 GUCY2D chr17:7907474 5'GT 7907474 Upstream 36bp 31982 chr2 27121457 27121457 1 + C T SKCM 27121458 + 27121438 27121478 41 ACGAGGCTGACGTCTACATCGAGAATGGCATCATCCAGCAG ACGAGGCTGACGTCTACATTGAGAATGGCATCATCCAGCAG < 41bp 0.547190687005496 0.750725092609974 NA NA prediction 0.407068811208956 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27121458 chr2:27121457 synonymous SNV . 0 20 hm7G_associated_SNPs_34778 0 0 0 0 1 DPYSL5 chr2:27121364 3'AG 27121364 Downstream 94bp 31983 chr7 114619572 114619572 1 + C T LUAD 114619573 + 114619553 114619593 41 TAATTTAGCCCAACCTCAGCGCTTGCCTCAGCTTCAGACTT TAATTTAGCCCAACCTCAGTGCTTGCCTCAGCTTCAGACTT < 41bp 0.530085312121584 0.733618324487598 NA NA prediction 0.407066024732028 Functional Gain - MDFIC ENSG00000135272 CDS Human protein_coding chr7:114619573 chr7:114619572 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_34779 0 0 0 0 1 MDFIC chr7:114619561 3'AG 114619561 Downstream 12bp 31984 chr19 10657598 10657598 1 + C T COAD 10657599 + 10657579 10657619 41 CCGGTACCATGGGCCTGCCCGCTGGATGCCCCCACGCTGGG CCGGTACCATGGGCCTGCCTGCTGGATGCCCCCACGCTGGG < 41bp 0.515060091593101 0.718593058135448 NA NA prediction 0.407065933084694 Functional Gain - ATG4D ENSG00000130734 CDS Human protein_coding chr19:10657599 chr19:10657598 nonsynonymous SNV 0.243 2 20 hm7G_associated_SNPs_34780 0 0 0 0 1 ATG4D chr19:10657515 3'AG 10657515 Downstream 84bp 31985 chr11 111420408 111420408 1 + C T UCEC 111420409 + 111420389 111420429 41 GTCATGTACCATCAGCCATCGGCACCCGCTGGCATCGGAGG GTCATGTACCATCAGCCATTGGCACCCGCTGGCATCGGAGG < 41bp 0.538077905137139 0.741605529069325 NA NA prediction 0.407055247864371 Functional Gain - LAYN ENSG00000204381 CDS Human protein_coding chr11:111420409 chr11:111420408 nonsynonymous SNV 0.854 4 20 hm7G_associated_SNPs_34784 0 0 0 0 2 LAYN chr11:111420343 3'AG 111420343 Downstream 66bp 31986 chr11 111420408 111420408 1 + C T UCEC 111420409 + 111420389 111420429 41 GTCATGTACCATCAGCCATCGGCACCCGCTGGCATCGGAGG GTCATGTACCATCAGCCATTGGCACCCGCTGGCATCGGAGG < 41bp 0.538077905137139 0.741605529069325 NA NA prediction 0.407055247864371 Functional Gain - LAYN ENSG00000204381 CDS Human protein_coding chr11:111420409 chr11:111420408 nonsynonymous SNV 0.854 4 20 hm7G_associated_SNPs_34784 0 0 0 0 2 LAYN chr11:111420500 5'GT 111420500 Upstream 93bp 31987 chr14 100602267 100602267 1 + C T UCEC 100602268 + 100602248 100602288 41 CCTAGTACCTCCCCCTCTCCGGGGACCCGAGCAGCCAGCCA CCTAGTACCTCCCCCTCTCTGGGGACCCGAGCAGCCAGCCA < 41bp 0.531387602433832 0.734914451484044 NA NA prediction 0.407053698100424 Functional Gain - EVL ENSG00000196405 CDS Human protein_coding chr14:100602268 chr14:100602267 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_34785 0 0 1 0 2 EVL chr14:100602242 3'AG 100602242 Downstream 26bp 31988 chr14 100602267 100602267 1 + C T UCEC 100602268 + 100602248 100602288 41 CCTAGTACCTCCCCCTCTCCGGGGACCCGAGCAGCCAGCCA CCTAGTACCTCCCCCTCTCTGGGGACCCGAGCAGCCAGCCA < 41bp 0.531387602433832 0.734914451484044 NA NA prediction 0.407053698100424 Functional Gain - EVL ENSG00000196405 CDS Human protein_coding chr14:100602268 chr14:100602267 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_34785 0 0 1 0 2 EVL chr14:100602305 5'GT 100602305 Upstream 39bp 31989 chr2 182322537 182322537 1 + C T UCEC 182322538 + 182322518 182322558 41 GCCCCCACAACACGCTGTTCGGCTACTCGGTCGTGCTGCAC GCCCCCACAACACGCTGTTTGGCTACTCGGTCGTGCTGCAC < 41bp 0.520399710884457 0.723926365824206 NA NA prediction 0.407053309879499 Functional Gain - ITGA4 ENSG00000115232 CDS Human protein_coding chr2:182322538 chr2:182322537 synonymous SNV . 0 20 hm7G_associated_SNPs_34786 0 0 1 0 1 ITGA4 chr2:182322578 5'GT 182322578 Upstream 42bp 31990 chr17 4685809 4685809 1 + G A STAD 4685810 + 4685790 4685830 41 ACATCCAGATGCTGCGCTCGGTCTTCTCCTCGGCGTTCGGG ACATCCAGATGCTGCGCTCAGTCTTCTCCTCGGCGTTCGGG < 41bp 0.570478086429276 0.774004545631817 NA NA prediction 0.40705291840508 Functional Gain - TM4SF5 ENSG00000142484 CDS Human protein_coding chr17:4685810 chr17:4685809 synonymous SNV . 0 20 hm7G_associated_SNPs_34787 0 0 0 0 1 TM4SF5 chr17:4685798 3'AG 4685798 Downstream 12bp 31991 chr20 42199276 42199276 1 + G A SKCM 42199277 + 42199257 42199297 41 CTCTTCTTCCACCTGCAGCGGGAGCGCCGGTTCCTGGAGCC CTCTTCTTCCACCTGCAGCAGGAGCGCCGGTTCCTGGAGCC < 41bp 0.54883159742745 0.752356223452388 NA NA prediction 0.407049252049876 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42199277 chr20:42199276 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34788 0 0 0 0 2 SGK2 chr20:42199257 3'AG 42199257 Downstream 20bp 31992 chr20 42199276 42199276 1 + G A SKCM 42199277 + 42199257 42199297 41 CTCTTCTTCCACCTGCAGCGGGAGCGCCGGTTCCTGGAGCC CTCTTCTTCCACCTGCAGCAGGAGCGCCGGTTCCTGGAGCC < 41bp 0.54883159742745 0.752356223452388 NA NA prediction 0.407049252049876 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42199277 chr20:42199276 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34788 0 0 0 0 2 SGK2 chr20:42199369 5'GT 42199369 Upstream 94bp 31993 chr16 84228722 84228722 1 + G A READ 84228723 + 84228703 84228743 41 CGCAGCGTTGGTGAGCGCCGGCTTTGACCTCCTGTTGGACG CGCAGCGTTGGTGAGCGCCAGCTTTGACCTCCTGTTGGACG < 41bp 0.58110727792057 0.784630687059937 NA NA prediction 0.407046818278734 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228723 chr16:84228722 nonsynonymous SNV 0.165 1 20 hm7G_associated_SNPs_34791 0 0 0 0 2 ADAD2 chr16:84228675 3'AG 84228675 Downstream 48bp 31994 chr16 84228722 84228722 1 + G A READ 84228723 + 84228703 84228743 41 CGCAGCGTTGGTGAGCGCCGGCTTTGACCTCCTGTTGGACG CGCAGCGTTGGTGAGCGCCAGCTTTGACCTCCTGTTGGACG < 41bp 0.58110727792057 0.784630687059937 NA NA prediction 0.407046818278734 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84228723 chr16:84228722 nonsynonymous SNV 0.165 1 20 hm7G_associated_SNPs_34791 0 0 0 0 2 ADAD2 chr16:84228800 5'GT 84228800 Upstream 79bp 31995 chr19 4033558 4033558 1 + C T ESCA 4033559 + 4033539 4033579 41 GCGACAAGCCAGCCCCCTACGACCAGCTCATCATCGACGGG GCGACAAGCCAGCCCCCTATGACCAGCTCATCATCGACGGG < 41bp 0.512066052281652 0.715587595066556 NA NA prediction 0.407043085569808 Functional Gain - PIAS4 ENSG00000105229 CDS Human protein_coding chr19:4033559 chr19:4033558 synonymous SNV . 0 20 hm7G_associated_SNPs_34792 0 0 1 0 1 PIAS4 chr19:4033578 5'GT 4033578 Upstream 21bp 31996 chr20 2306540 2306540 1 + G A LUAD 2306541 + 2306521 2306561 41 GGTTTGTGAGGTCTGACCTGGGCCCCTCGTACGGTGGATGG GGTTTGTGAGGTCTGACCTAGGCCCCTCGTACGGTGGATGG < 41bp 0.563341659484005 0.766857995067977 NA NA prediction 0.407032671167946 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2306541 chr20:2306540 synonymous SNV . 0 20 hm7G_associated_SNPs_34795 0 0 0 0 2 TGM3 chr20:2306495 3'AG 2306495 Downstream 46bp 31997 chr20 2306540 2306540 1 + G A LUAD 2306541 + 2306521 2306561 41 GGTTTGTGAGGTCTGACCTGGGCCCCTCGTACGGTGGATGG GGTTTGTGAGGTCTGACCTAGGCCCCTCGTACGGTGGATGG < 41bp 0.563341659484005 0.766857995067977 NA NA prediction 0.407032671167946 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2306541 chr20:2306540 synonymous SNV . 0 20 hm7G_associated_SNPs_34795 0 0 0 0 2 TGM3 chr20:2306598 5'GT 2306598 Upstream 59bp 31998 chr9 72879268 72879268 1 + C T SKCM 72879269 + 72879249 72879289 41 GACCCCACTTGAATATGATCGTTGGAGCCAATGGAACAGGG GACCCCACTTGAATATGATTGTTGGAGCCAATGGAACAGGG < 41bp 0.501997007726939 0.705513134412818 NA NA prediction 0.407032253371759 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72879269 chr9:72879268 synonymous SNV . 0 20 hm7G_associated_SNPs_34796 0 0 1 0 2 SMC5 chr9:72879220 3'AG 72879220 Downstream 49bp 31999 chr9 72879268 72879268 1 + C T SKCM 72879269 + 72879249 72879289 41 GACCCCACTTGAATATGATCGTTGGAGCCAATGGAACAGGG GACCCCACTTGAATATGATTGTTGGAGCCAATGGAACAGGG < 41bp 0.501997007726939 0.705513134412818 NA NA prediction 0.407032253371759 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72879269 chr9:72879268 synonymous SNV . 0 20 hm7G_associated_SNPs_34796 0 0 1 0 2 SMC5 chr9:72879361 5'GT 72879361 Upstream 94bp 32000 chr10 102510487 102510487 1 + C T UCEC 102510488 + 102510468 102510508 41 GCATCAAGCCGGGTGTGATCGGTGGCTCCAAGCCCAAAGTG GCATCAAGCCGGGTGTGATTGGTGGCTCCAAGCCCAAAGTG < 41bp 0.535592271539157 0.739107334616979 NA NA prediction 0.407030126155644 Functional Gain - PAX2 ENSG00000075891 CDS Human protein_coding chr10:102510488 chr10:102510487 synonymous SNV . 0 20 hm7G_associated_SNPs_34797 0 0 0 0 1 PAX2 chr10:102510451 3'AG 102510451 Downstream 37bp 32001 chr19 54483236 54483236 1 + C T HNSC 54483237 + 54483217 54483257 41 AGAGGAACATCATTCTGGGCGCAGGGATCCTGTTCGTGGCA AGAGGAACATCATTCTGGGTGCAGGGATCCTGTTCGTGGCA < 41bp 0.497248101263068 0.703514764266087 NA NA prediction 0.407029528532174 Functional Gain - CACNG8 ENSG00000142408 CDS Human protein_coding chr19:54483237 chr19:54483236 synonymous SNV . 0 20 hm7G_associated_SNPs_34798 0 0 0 0 1 CACNG8 chr19:54483261 5'GT 54483261 Upstream 26bp 32002 chr8 42948675 42948675 1 + G A rs180779859 42948676 + 42948656 42948696 41 CCAGTGCGTGCTGGCCCGGGGTGGCAGGAGCCGCAGAGGCT CCAGTGCGTGCTGGCCCGGAGTGGCAGGAGCCGCAGAGGCT < 41bp 0.547268672671005 0.750782333967803 NA NA prediction 0.407027322593596 Functional Gain - POMK ENSG00000185900 UTR5 Human protein_coding chr8:42948676 chr8:42948675 . . 0 20 hm7G_associated_SNPs_34799 0 0 1 0 1 POMK chr8:42948706 5'GT 42948706 Upstream 32bp 32003 chr12 4829956 4829956 1 + C T UCEC 4829957 + 4829937 4829977 41 ACTTTACAAAACCTGTTTACGGGTGGTCTCCACAGGGAGCT ACTTTACAAAACCTGTTTATGGGTGGTCTCCACAGGGAGCT < 41bp 0.518347470130643 0.721856895650131 NA NA prediction 0.407018851038977 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4829957 chr12:4829956 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_34800 0 0 0 0 1 GALNT8 chr12:4830054 5'GT 4830054 Upstream 99bp 32004 chrX 152822475 152822475 1 + C T BRCA 152822476 + 152822456 152822496 41 AGAAGGCGGACGTGGGCTTCGCCATGGTAAGCCACCTGGTG AGAAGGCGGACGTGGGCTTTGCCATGGTAAGCCACCTGGTG < 41bp 0.496361226911224 0.703506836930796 NA NA prediction 0.407013673861592 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152822476 chrX:152822475 synonymous SNV . 0 20 hm7G_associated_SNPs_34802 0 0 0 0 1 ATP2B3 chrX:152822481 5'GT 152822481 Upstream 7bp 32005 chr4 160251115 160251115 1 + C T UCEC 160251116 + 160251096 160251136 41 TGTTATGGTGAAAGAACACCGAGAACTTGATCGAACTGGAA TGTTATGGTGAAAGAACACTGAGAACTTGATCGAACTGGAA < 41bp 0.496828466759875 0.703504258410375 NA NA prediction 0.407008516820749 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160251116 chr4:160251115 stopgain 0.992 1 20 hm7G_associated_SNPs_34804 0 0 1 0 1 RAPGEF2 chr4:160251162 5'GT 160251162 Upstream 48bp 32006 chr14 73717620 73717620 1 + C T SKCM 73717621 + 73717601 73717641 41 ATCTCTGCCCACAGGTTGTCGGCTGTGATCACGAGCTGGAC ATCTCTGCCCACAGGTTGTTGGCTGTGATCACGAGCTGGAC < 41bp 0.528089562268843 0.731593808944493 NA NA prediction 0.4070084933513 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73717621 chr14:73717620 synonymous SNV . 0 20 hm7G_associated_SNPs_34805 0 0 1 0 1 PAPLN chr14:73717615 3'AG 73717615 Downstream 6bp 32007 chr5 156741453 156741453 1 + C T UCEC 156741454 + 156741434 156741474 41 AGCTTCTATCCAAGTGGAGCGCCCACGTCATGGAGGTGGTA AGCTTCTATCCAAGTGGAGTGCCCACGTCATGGAGGTGGTA < 41bp 0.542251355887703 0.745753854837741 NA NA prediction 0.407004997900077 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156741454 chr5:156741453 synonymous SNV . 0 20 hm7G_associated_SNPs_34807 0 0 0 0 1 CYFIP2 chr5:156741471 5'GT 156741471 Upstream 19bp 32008 chr2 120385285 120385285 1 + C T GBM 120385286 + 120385266 120385306 41 TCAGGATGATTATACCAGCCGGTTCTCTGTGTCGCCCAAGG TCAGGATGATTATACCAGCTGGTTCTCTGTGTCGCCCAAGG < 41bp 0.523101377495359 0.726601499280272 NA NA prediction 0.407000243569826 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120385286 chr2:120385285 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_34808 0 0 0 0 2 CFAP221 chr2:120385229 3'AG 120385229 Downstream 57bp 32009 chr2 120385285 120385285 1 + C T GBM 120385286 + 120385266 120385306 41 TCAGGATGATTATACCAGCCGGTTCTCTGTGTCGCCCAAGG TCAGGATGATTATACCAGCTGGTTCTCTGTGTCGCCCAAGG < 41bp 0.523101377495359 0.726601499280272 NA NA prediction 0.407000243569826 Functional Gain - CFAP221 ENSG00000163075 CDS Human protein_coding chr2:120385286 chr2:120385285 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_34808 0 0 0 0 2 CFAP221 chr2:120385362 5'GT 120385362 Upstream 78bp 32010 chr17 7414839 7414839 1 + C T UCEC 7414840 + 7414820 7414860 41 GGACGGCGTGAGCTTGATGCGGGTGCTGAGTGAGAAGGACG GGACGGCGTGAGCTTGATGTGGGTGCTGAGTGAGAAGGACG < 41bp 0.5586329593086 0.762130862769888 NA NA prediction 0.406995806922576 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7414840 chr17:7414839 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_34810 0 0 1 0 1 POLR2A chr17:7414907 5'GT 7414907 Upstream 69bp 32011 chr2 85604495 85604495 1 + C T MESO 85604496 + 85604476 85604516 41 CAGCCACAGACCTGAGAGGCGCAGGCTTCCTTGCCCTCCTG CAGCCACAGACCTGAGAGGTGCAGGCTTCCTTGCCCTCCTG < 41bp 0.554814297462247 0.758310948121918 NA NA prediction 0.406993301319342 Functional Gain - ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85604496 chr2:85604495 synonymous SNV . 0 20 hm7G_associated_SNPs_34811 0 0 0 0 1 ELMOD3 chr2:85604467 3'AG 85604467 Downstream 29bp 32012 chr22 39822896 39822896 1 + C T rs376771061 39822897 + 39822877 39822917 41 ACTTTGGCTACCCGCTGGGCGAAATGAGCCAGCCCACACCG ACTTTGGCTACCCGCTGGGTGAAATGAGCCAGCCCACACCG < 41bp 0.534165600176299 0.737661690837013 NA NA prediction 0.406992181321427 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39822897 chr22:39822896 synonymous SNV . 0 20 hm7G_associated_SNPs_34812 0 0 1 0 1 TAB1 chr22:39822930 5'GT 39822930 Upstream 35bp 32013 chr17 19216546 19216546 1 + C T ESCA 19216547 + 19216527 19216567 41 ACCAGACCAACCCCTGGGGCGGGCCAGCGGCTCCTGCGAGT ACCAGACCAACCCCTGGGGTGGGCCAGCGGCTCCTGCGAGT < 41bp 0.529269473004119 0.732765150998134 NA NA prediction 0.40699135598803 Functional Gain - EPN2 ENSG00000072134 CDS Human protein_coding chr17:19216547 chr17:19216546 synonymous SNV . 0 20 hm7G_associated_SNPs_34814 0 0 0 0 1 EPN2 chr17:19216592 5'GT 19216592 Upstream 47bp 32014 chr6 41899485 41899485 1 + C T rs140745860 41899486 + 41899466 41899506 41 GGATCCTGATTCCACTGTGCGAGTCTGGCACTTGTACCCTC GGATCCTGATTCCACTGTGTGAGTCTGGCACTTGTACCCTC < 41bp 0.521286506895236 0.724781875026594 NA NA prediction 0.406990736262716 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41899486 chr6:41899485 synonymous SNV . 0 20 hm7G_associated_SNPs_34815 0 0 1 0 2 BYSL chr6:41899466 3'AG 41899466 Downstream 20bp 32015 chr6 41899485 41899485 1 + C T rs140745860 41899486 + 41899466 41899506 41 GGATCCTGATTCCACTGTGCGAGTCTGGCACTTGTACCCTC GGATCCTGATTCCACTGTGTGAGTCTGGCACTTGTACCCTC < 41bp 0.521286506895236 0.724781875026594 NA NA prediction 0.406990736262716 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41899486 chr6:41899485 synonymous SNV . 0 20 hm7G_associated_SNPs_34815 0 0 1 0 2 BYSL chr6:41899568 5'GT 41899568 Upstream 84bp 32016 chr5 134010343 134010343 1 + C T STAD 134010344 + 134010324 134010364 41 CAAGAATCCCAAAATGAGCCGAAGTGTTGGATATTCATATC CAAGAATCCCAAAATGAGCTGAAGTGTTGGATATTCATATC < 41bp 0.524820045758747 0.728315384725618 NA NA prediction 0.406990677933743 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134010344 chr5:134010343 stopgain 0.997 0 20 hm7G_associated_SNPs_34816 0 0 1 0 2 SEC24A chr5:134010305 3'AG 134010305 Downstream 39bp 32017 chr5 134010343 134010343 1 + C T STAD 134010344 + 134010324 134010364 41 CAAGAATCCCAAAATGAGCCGAAGTGTTGGATATTCATATC CAAGAATCCCAAAATGAGCTGAAGTGTTGGATATTCATATC < 41bp 0.524820045758747 0.728315384725618 NA NA prediction 0.406990677933743 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134010344 chr5:134010343 stopgain 0.997 0 20 hm7G_associated_SNPs_34816 0 0 1 0 2 SEC24A chr5:134010316 3'AG 134010316 Downstream 28bp 32018 chr1 20657428 20657428 1 + C T UCEC 20657429 + 20657409 20657449 41 AAGGACTGGCATCTGTGTCCGAGGGCAGTGCTGAGCTCCTG AAGGACTGGCATCTGTGTCTGAGGGCAGTGCTGAGCTCCTG < 41bp 0.558575121529794 0.762068261967071 NA NA prediction 0.406986280874553 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20657429 chr1:20657428 synonymous SNV . 0 20 hm7G_associated_SNPs_34817 0 0 0 0 2 VWA5B1 chr1:20657362 3'AG 20657362 Downstream 67bp 32019 chr1 20657428 20657428 1 + C T UCEC 20657429 + 20657409 20657449 41 AAGGACTGGCATCTGTGTCCGAGGGCAGTGCTGAGCTCCTG AAGGACTGGCATCTGTGTCTGAGGGCAGTGCTGAGCTCCTG < 41bp 0.558575121529794 0.762068261967071 NA NA prediction 0.406986280874553 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20657429 chr1:20657428 synonymous SNV . 0 20 hm7G_associated_SNPs_34817 0 0 0 0 2 VWA5B1 chr1:20657476 5'GT 20657476 Upstream 49bp 32020 chr19 41094577 41094577 1 + C T GBM 41094578 + 41094558 41094598 41 ATGGTCTGTGACTCGCTTCCGCGGCATGATTTCCACCCAGC ATGGTCTGTGACTCGCTTCTGCGGCATGATTTCCACCCAGC < 41bp 0.554559427660831 0.758051887902326 NA NA prediction 0.40698492048299 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41094578 chr19:41094577 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_34819 0 0 1 0 1 SHKBP1 chr19:41094530 3'AG 41094530 Downstream 48bp 32021 chr11 113775684 113775684 1 + G A LUAD 113775685 + 113775665 113775705 41 AGTGTAATGGCTCCCCTGTGGGCCTGCATCCTGGTGGCTGC AGTGTAATGGCTCCCCTGTAGGCCTGCATCCTGGTGGCTGC < 41bp 0.53017012470867 0.733659694236801 NA NA prediction 0.406979139056262 Functional Gain - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113775685 chr11:113775684 stopgain 0.640 1 20 hm7G_associated_SNPs_34820 0 0 0 0 1 HTR3B chr11:113775707 5'GT 113775707 Upstream 24bp 32022 chr10 95549905 95549905 1 + G T UCEC 95549906 + 95549886 95549926 41 CCCAAAAGATATTTTCAAAGGCCTGGATTCTTTAACAAATG CCCAAAAGATATTTTCAAATGCCTGGATTCTTTAACAAATG < 41bp 0.375648995262719 0.70348807382579 NA NA prediction 0.40697614765158 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95549906 chr10:95549905 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34821 0 0 0 1 3 LGI1 chr10:95549856 3'AG 95549856 Downstream 50bp 32023 chr10 95549905 95549905 1 + G T UCEC 95549906 + 95549886 95549926 41 CCCAAAAGATATTTTCAAAGGCCTGGATTCTTTAACAAATG CCCAAAAGATATTTTCAAATGCCTGGATTCTTTAACAAATG < 41bp 0.375648995262719 0.70348807382579 NA NA prediction 0.40697614765158 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95549906 chr10:95549905 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34821 0 0 0 1 3 LGI1 chr10:95549927 5'GT 95549927 Upstream 23bp 32024 chr10 95549905 95549905 1 + G T UCEC 95549906 + 95549886 95549926 41 CCCAAAAGATATTTTCAAAGGCCTGGATTCTTTAACAAATG CCCAAAAGATATTTTCAAATGCCTGGATTCTTTAACAAATG < 41bp 0.375648995262719 0.70348807382579 NA NA prediction 0.40697614765158 Functional Gain - LGI1 ENSG00000108231 CDS Human protein_coding chr10:95549906 chr10:95549905 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34821 0 0 0 1 3 LGI1 chr10:95549990 5'GT 95549990 Upstream 86bp 32025 chr10 72500824 72500824 1 + C T rs75615682 72500825 + 72500805 72500845 41 AGGAGTGCCCTGGGACCTACGAGGACTTCCGGGCCCAGCAG AGGAGTGCCCTGGGACCTATGAGGACTTCCGGGCCCAGCAG < 41bp 0.542241185965222 0.745728998338906 NA NA prediction 0.406975624747367 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72500825 chr10:72500824 synonymous SNV . 0 20 hm7G_associated_SNPs_34822 0 0 1 0 2 ADAMTS14 chr10:72500743 3'AG 72500743 Downstream 82bp 32026 chr10 72500824 72500824 1 + C T rs75615682 72500825 + 72500805 72500845 41 AGGAGTGCCCTGGGACCTACGAGGACTTCCGGGCCCAGCAG AGGAGTGCCCTGGGACCTATGAGGACTTCCGGGCCCAGCAG < 41bp 0.542241185965222 0.745728998338906 NA NA prediction 0.406975624747367 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72500825 chr10:72500824 synonymous SNV . 0 20 hm7G_associated_SNPs_34822 0 0 1 0 2 ADAMTS14 chr10:72500918 5'GT 72500918 Upstream 95bp 32027 chr1 65141094 65141094 1 + C T GBM 65141095 + 65141075 65141115 41 GTTCTGTAGGGGGATTTGACGAACCTTGTGCATGGCAGCCA GTTCTGTAGGGGGATTTGATGAACCTTGTGCATGGCAGCCA < 41bp 0.551762565698133 0.755248689540015 NA NA prediction 0.406972247683765 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65141095 chr1:65141094 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_34824 0 0 0 0 1 CACHD1 chr1:65141084 3'AG 65141084 Downstream 11bp 32028 chr12 109637324 109637324 1 + C T LUSC 109637325 + 109637305 109637345 41 CAGTGGAGGATGGGGGCCACGTTGAGGCTGGGAGCAGCTAC CAGTGGAGGATGGGGGCCATGTTGAGGCTGGGAGCAGCTAC < 41bp 0.522837122249894 0.726322978055746 NA NA prediction 0.406971711611704 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109637325 chr12:109637324 synonymous SNV . 0 20 hm7G_associated_SNPs_34825 0 0 1 0 1 ACACB chr12:109637357 5'GT 109637357 Upstream 34bp 32029 chr11 64026100 64026100 1 + C T LUSC 64026101 + 64026081 64026121 41 GACCACAGAGGTGCCTCTGCGCGACGTGCTGGAGGCCATTG GACCACAGAGGTGCCTCTGTGCGACGTGCTGGAGGCCATTG < 41bp 0.525176211210855 0.728660703213086 NA NA prediction 0.406968984004461 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64026101 chr11:64026100 nonsynonymous SNV 0.398 3 20 hm7G_associated_SNPs_34827 0 0 1 0 1 PLCB3 chr11:64026185 5'GT 64026185 Upstream 86bp 32030 chr12 123333065 123333065 1 + C T rs2135014 123333066 + 123333046 123333086 41 CTTTCACCTTCTGGTCCTACGCCATTGGGCTGCCGCTGCCC CTTTCACCTTCTGGTCCTATGCCATTGGGCTGCCGCTGCCC < 41bp 0.511894599343466 0.715377085878232 NA NA prediction 0.406964973069533 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123333066 chr12:123333065 synonymous SNV . 0 20 hm7G_associated_SNPs_34829 0 0 1 0 2 HIP1R chr12:123333013 3'AG 123333013 Downstream 53bp 32031 chr12 123333065 123333065 1 + C T rs2135014 123333066 + 123333046 123333086 41 CTTTCACCTTCTGGTCCTACGCCATTGGGCTGCCGCTGCCC CTTTCACCTTCTGGTCCTATGCCATTGGGCTGCCGCTGCCC < 41bp 0.511894599343466 0.715377085878232 NA NA prediction 0.406964973069533 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123333066 chr12:123333065 synonymous SNV . 0 20 hm7G_associated_SNPs_34829 0 0 1 0 2 HIP1R chr12:123333155 5'GT 123333155 Upstream 91bp 32032 chr15 59752394 59752394 1 + C T COAD 59752395 + 59752375 59752415 41 CATAGTGAAGCAACTTAATCGGGATATCGAGGTAAGGTTTG CATAGTGAAGCAACTTAATTGGGATATCGAGGTAAGGTTTG < 41bp 0.524309690386766 0.727791207128306 NA NA prediction 0.40696303348308 Functional Gain - FAM81A ENSG00000157470 CDS Human protein_coding chr15:59752395 chr15:59752394 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34830 0 0 0 0 1 FAM81A chr15:59752405 5'GT 59752405 Upstream 12bp 32033 chr7 899821 899821 1 + C T COAD 899822 + 899802 899842 41 TTTCCGAAGATCAGCAAGGCGGTTCTCTGGAACAGCTGCTG TTTCCGAAGATCAGCAAGGTGGTTCTCTGGAACAGCTGCTG < 41bp 0.544930200774708 0.748411438525061 NA NA prediction 0.406962475500706 Functional Gain - SUN1 ENSG00000164828 CDS Human protein_coding chr7:899822 chr7:899821 synonymous SNV . 0 20 hm7G_associated_SNPs_34831 0 0 1 0 1 SUN1 chr7:899765 3'AG 899765 Downstream 57bp 32034 chr11 12248580 12248580 1 + C T LGG 12248581 + 12248561 12248601 41 TTTCCCAACAGATTCTTGGCGCAAAAACTATGGAGAAAATG TTTCCCAACAGATTCTTGGTGCAAAAACTATGGAGAAAATG < 41bp 0.533004459455024 0.736480964017144 NA NA prediction 0.406953009124241 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12248581 chr11:12248580 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_34835 0 0 0 0 2 MICAL2 chr11:12248572 3'AG 12248572 Downstream 9bp 32035 chr11 12248580 12248580 1 + C T LGG 12248581 + 12248561 12248601 41 TTTCCCAACAGATTCTTGGCGCAAAAACTATGGAGAAAATG TTTCCCAACAGATTCTTGGTGCAAAAACTATGGAGAAAATG < 41bp 0.533004459455024 0.736480964017144 NA NA prediction 0.406953009124241 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12248581 chr11:12248580 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_34835 0 0 0 0 2 MICAL2 chr11:12248678 5'GT 12248678 Upstream 99bp 32036 chr1 908657 908657 1 + G A STAD 908658 + 908638 908678 41 TCACCCGGGAGCAAGGCCCGGGCAGAGGGCCGCGGCCCTGT TCACCCGGGAGCAAGGCCCAGGCAGAGGGCCGCGGCCCTGT < 41bp 0.596071179440221 0.799547683264362 NA NA prediction 0.406953007648282 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:908658 chr1:908657 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_34836 0 0 0 0 2 PLEKHN1 chr1:908566 3'AG 908566 Downstream 92bp 32037 chr1 908657 908657 1 + G A STAD 908658 + 908638 908678 41 TCACCCGGGAGCAAGGCCCGGGCAGAGGGCCGCGGCCCTGT TCACCCGGGAGCAAGGCCCAGGCAGAGGGCCGCGGCCCTGT < 41bp 0.596071179440221 0.799547683264362 NA NA prediction 0.406953007648282 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:908658 chr1:908657 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_34836 0 0 0 0 2 PLEKHN1 chr1:908706 5'GT 908706 Upstream 50bp 32038 chrX 152958920 152958920 1 + C T UCEC 152958921 + 152958901 152958941 41 CCCCTCCACCCCTCAGGGACGCCATCATCCTGGCTCTCATC CCCCTCCACCCCTCAGGGATGCCATCATCCTGGCTCTCATC < 41bp 0.51285076649398 0.716324425159917 NA NA prediction 0.406947317331875 Functional Gain - SLC6A8 ENSG00000130821 CDS Human protein_coding chrX:152958921 chrX:152958920 nonsynonymous SNV 0.313 0 20 hm7G_associated_SNPs_34837 2 0 1 1 1 SLC6A8 chrX:152958917 3'AG 152958917 Downstream 4bp 32039 chr19 49459056 49459056 1 + G A UCEC 49459057 + 49459037 49459077 41 CGAGTGTCTCAAGCGCATCGGGGACGAACTGGACAGTAACA CGAGTGTCTCAAGCGCATCAGGGACGAACTGGACAGTAACA < 41bp 0.50664859831168 0.710118586542328 NA NA prediction 0.406939976461295 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49459057 chr19:49459056 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_34838 1 0 1 1 1 BAX chr19:49459090 5'GT 49459090 Upstream 35bp 32040 chr20 1905430 1905430 1 + C T UCEC 1905431 + 1905411 1905451 41 GAACACTGGATCTAATGAACGGAACATCTATATTGTGGTGG GAACACTGGATCTAATGAATGGAACATCTATATTGTGGTGG < 41bp 0.534407566423007 0.73787643790619 NA NA prediction 0.406937742966366 Functional Gain - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905431 chr20:1905430 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_34839 0 0 0 0 2 SIRPA chr20:1905410 3'AG 1905410 Downstream 21bp 32041 chr20 1905430 1905430 1 + C T UCEC 1905431 + 1905411 1905451 41 GAACACTGGATCTAATGAACGGAACATCTATATTGTGGTGG GAACACTGGATCTAATGAATGGAACATCTATATTGTGGTGG < 41bp 0.534407566423007 0.73787643790619 NA NA prediction 0.406937742966366 Functional Gain - SIRPA ENSG00000198053 CDS Human protein_coding chr20:1905431 chr20:1905430 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_34839 0 0 0 0 2 SIRPA chr20:1905523 5'GT 1905523 Upstream 94bp 32042 chr10 127677131 127677131 1 + C T LUSC 127677132 + 127677112 127677152 41 CTGTCTAGGGGATATGCAACGAAGCATGTTGTTGAAGGTCT CTGTCTAGGGGATATGCAATGAAGCATGTTGTTGAAGGTCT < 41bp 0.503310518267073 0.706778169124202 NA NA prediction 0.406935301714258 Functional Gain - FANK1 ENSG00000203780 CDS Human protein_coding chr10:127677132 chr10:127677131 nonsynonymous SNV 0.957 2 20 hm7G_associated_SNPs_34840 0 0 0 0 1 FANK1 chr10:127677120 3'AG 127677120 Downstream 12bp 32043 chr19 51361826 51361826 1 + G T rs187449592 51361827 + 51361807 51361847 41 ATGCTGTGTGCTGGACGCTGGACAGGGGGCAAAAGCACCTG ATGCTGTGTGCTGGACGCTTGACAGGGGGCAAAAGCACCTG < 41bp 0.706133748135636 0.909601358800485 NA NA prediction 0.406935221329697 Functional Gain - KLK3 ENSG00000142515 CDS Human protein_coding chr19:51361827 chr19:51361826 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_34841 0 0 0 0 1 KLK3 chr19:51361851 5'GT 51361851 Upstream 26bp 32044 chr17 7245635 7245635 1 + G A UCEC 7245636 + 7245616 7245656 41 TGAGCCTGAACCACAAGCTGGACAGCCATGCGGTAAGTAGG TGAGCCTGAACCACAAGCTAGACAGCCATGCGGTAAGTAGG < 41bp 0.541615929415353 0.745081848208661 NA NA prediction 0.406931837586616 Functional Gain - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7245636 chr17:7245635 synonymous SNV . 0 20 hm7G_associated_SNPs_34842 0 0 0 0 2 ACAP1 chr17:7245594 3'AG 7245594 Downstream 42bp 32045 chr17 7245635 7245635 1 + G A UCEC 7245636 + 7245616 7245656 41 TGAGCCTGAACCACAAGCTGGACAGCCATGCGGTAAGTAGG TGAGCCTGAACCACAAGCTAGACAGCCATGCGGTAAGTAGG < 41bp 0.541615929415353 0.745081848208661 NA NA prediction 0.406931837586616 Functional Gain - ACAP1 ENSG00000072818 CDS Human protein_coding chr17:7245636 chr17:7245635 synonymous SNV . 0 20 hm7G_associated_SNPs_34842 0 0 0 0 2 ACAP1 chr17:7245647 5'GT 7245647 Upstream 13bp 32046 chr9 71532644 71532644 1 + G T LUAD 71532645 + 71532625 71532665 41 CCAGGGTCCAGGGAAATCTGGAGATGGGATAATCACAGAGA CCAGGGTCCAGGGAAATCTTGAGATGGGATAATCACAGAGA < 41bp 0.368615880123575 0.703465870750854 NA NA prediction 0.406931741501709 Functional Gain - PIP5K1B ENSG00000107242 CDS Human protein_coding chr9:71532645 chr9:71532644 stopgain 0.998 1 20 hm7G_associated_SNPs_34843 0 0 1 0 1 PIP5K1B chr9:71532675 5'GT 71532675 Upstream 32bp 32047 chr16 67300031 67300031 1 + G T UCEC 67300032 + 67300012 67300052 41 AGTCTGAGGAGGAGGAGGAGGAGAGCGACAGTTCAGAGACA AGTCTGAGGAGGAGGAGGATGAGAGCGACAGTTCAGAGACA < 41bp 0.70975881771761 0.913224251987191 NA NA prediction 0.406930868539162 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67300032 chr16:67300031 nonsynonymous SNV 0.881 0 20 hm7G_associated_SNPs_34844 0 0 0 0 2 SLC9A5 chr16:67299991 3'AG 67299991 Downstream 41bp 32048 chr16 67300031 67300031 1 + G T UCEC 67300032 + 67300012 67300052 41 AGTCTGAGGAGGAGGAGGAGGAGAGCGACAGTTCAGAGACA AGTCTGAGGAGGAGGAGGATGAGAGCGACAGTTCAGAGACA < 41bp 0.70975881771761 0.913224251987191 NA NA prediction 0.406930868539162 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67300032 chr16:67300031 nonsynonymous SNV 0.881 0 20 hm7G_associated_SNPs_34844 0 0 0 0 2 SLC9A5 chr16:67300128 5'GT 67300128 Upstream 98bp 32049 chr3 47043209 47043209 1 + C T GBM 47043210 + 47043190 47043230 41 TGTATGCAGCCTACTTGATCGCCTGGGAGCCTGGCCCCACC TGTATGCAGCCTACTTGATTGCCTGGGAGCCTGGCCCCACC < 41bp 0.519237097935167 0.722702472902593 NA NA prediction 0.406930749934853 Functional Gain - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47043210 chr3:47043209 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_34845 0 0 1 0 1 NBEAL2 chr3:47043179 3'AG 47043179 Downstream 31bp 32050 chrX 122538696 122538696 1 + C T STAD 122538697 + 122538677 122538717 41 AATTGTCCATCGTTGGTGACGGGAAATATGGTGCAAGGGAT AATTGTCCATCGTTGGTGATGGGAAATATGGTGCAAGGGAT < 41bp 0.525648754199786 0.729112396242355 NA NA prediction 0.406927284085138 Functional Gain - GRIA3 ENSG00000125675 CDS Human protein_coding chrX:122538697 chrX:122538696 synonymous SNV . 0 20 hm7G_associated_SNPs_34846 0 0 0 0 1 GRIA3 chrX:122538765 5'GT 122538765 Upstream 70bp 32051 chr17 48434610 48434610 1 + G A rs3803883 48434611 + 48434591 48434631 41 CCAGCCGGCTCCAGAGTCTGGAGGTGGGACAGGTCCCCCAC CCAGCCGGCTCCAGAGTCTAGAGGTGGGACAGGTCCCCCAC < 41bp 0.542343093805382 0.745806693568431 NA NA prediction 0.406927199526098 Functional Gain - XYLT2 ENSG00000015532 CDS Human protein_coding chr17:48434611 chr17:48434610 synonymous SNV . 0 20 hm7G_associated_SNPs_34847 0 0 1 0 1 XYLT2 chr17:48434613 5'GT 48434613 Upstream 4bp 32052 chr14 57114036 57114036 1 + C T UCEC 57114037 + 57114017 57114057 41 CTATGCCATCGCCTGTGAGCGGATGCTGCGTCTTCAGGCAA CTATGCCATCGCCTGTGAGTGGATGCTGCGTCTTCAGGCAA < 41bp 0.517802067230751 0.721265666267639 NA NA prediction 0.406927198073775 Functional Gain - TMEM260 ENSG00000070269 CDS Human protein_coding chr14:57114037 chr14:57114036 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_34848 0 0 0 0 1 TMEM260 chr14:57113961 3'AG 57113961 Downstream 76bp 32053 chr8 61765995 61765995 1 + C T GBM 61765996 + 61765976 61766016 41 CTATTTCAGAGAAAGGTTCCGAAGAGGATGAAGAGGAAAAG CTATTTCAGAGAAAGGTTCTGAAGAGGATGAAGAGGAAAAG < 41bp 0.523458702998331 0.726919543735136 NA NA prediction 0.406921681473609 Functional Gain - CHD7 ENSG00000171316 CDS Human protein_coding chr8:61765996 chr8:61765995 synonymous SNV . 0 20 hm7G_associated_SNPs_34849 1 0 1 0 1 CHD7 chr8:61766059 5'GT 61766059 Upstream 65bp 32054 chr16 67682846 67682846 1 + C T LGG 67682847 + 67682827 67682867 41 ACTTAGTGTGCGACGCAGGCGCTGTGAGCTCCCTGGATCTG ACTTAGTGTGCGACGCAGGTGCTGTGAGCTCCCTGGATCTG < 41bp 0.543975353634189 0.747435231497969 NA NA prediction 0.40691975572756 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67682847 chr16:67682846 synonymous SNV . 0 20 hm7G_associated_SNPs_34851 0 0 0 0 3 CARMIL2 chr16:67682796 3'AG 67682796 Downstream 51bp 32055 chr16 67682846 67682846 1 + C T LGG 67682847 + 67682827 67682867 41 ACTTAGTGTGCGACGCAGGCGCTGTGAGCTCCCTGGATCTG ACTTAGTGTGCGACGCAGGTGCTGTGAGCTCCCTGGATCTG < 41bp 0.543975353634189 0.747435231497969 NA NA prediction 0.40691975572756 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67682847 chr16:67682846 synonymous SNV . 0 20 hm7G_associated_SNPs_34851 0 0 0 0 3 CARMIL2 chr16:67682817 3'AG 67682817 Downstream 30bp 32056 chr16 67682846 67682846 1 + C T LGG 67682847 + 67682827 67682867 41 ACTTAGTGTGCGACGCAGGCGCTGTGAGCTCCCTGGATCTG ACTTAGTGTGCGACGCAGGTGCTGTGAGCTCCCTGGATCTG < 41bp 0.543975353634189 0.747435231497969 NA NA prediction 0.40691975572756 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67682847 chr16:67682846 synonymous SNV . 0 20 hm7G_associated_SNPs_34851 0 0 0 0 3 CARMIL2 chr16:67682877 5'GT 67682877 Upstream 32bp 32057 chr16 47699855 47699855 1 + C T COAD 47699856 + 47699836 47699876 41 CTCTTCTTTGCCCCCAGGTCGGTTGTACGCCGTGCAGCAAG CTCTTCTTTGCCCCCAGGTTGGTTGTACGCCGTGCAGCAAG < 41bp 0.492638361726136 0.70345912278617 NA NA prediction 0.40691824557234 Functional Gain - PHKB ENSG00000102893 CDS Human protein_coding chr16:47699856 chr16:47699855 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34852 0 0 1 0 2 PHKB chr16:47699853 3'AG 47699853 Downstream 3bp 32058 chr16 47699855 47699855 1 + C T COAD 47699856 + 47699836 47699876 41 CTCTTCTTTGCCCCCAGGTCGGTTGTACGCCGTGCAGCAAG CTCTTCTTTGCCCCCAGGTTGGTTGTACGCCGTGCAGCAAG < 41bp 0.492638361726136 0.70345912278617 NA NA prediction 0.40691824557234 Functional Gain - PHKB ENSG00000102893 CDS Human protein_coding chr16:47699856 chr16:47699855 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34852 0 0 1 0 2 PHKB chr16:47699943 5'GT 47699943 Upstream 89bp 32059 chr9 35806217 35806217 1 + C T rs114147262 35806218 + 35806198 35806238 41 ACAGATTAAGGGCTTCATTCGGCGCTTTAACAAGTGAGAGG ACAGATTAAGGGCTTCATTTGGCGCTTTAACAAGTGAGAGG < 41bp 0.537606301039922 0.741063299379769 NA NA prediction 0.406913996679695 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35806218 chr9:35806217 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34853 0 0 0 0 1 NPR2 chr9:35806230 5'GT 35806230 Upstream 14bp 32060 chr7 20668361 20668361 1 + G T LUAD 20668362 + 20668342 20668382 41 TCATGATCCTGGGTATACTGGCATCACTGGTCAATGGAGCC TCATGATCCTGGGTATACTTGCATCACTGGTCAATGGAGCC < 41bp 0.35703667605902 0.703456154283855 NA NA prediction 0.40691230856771 Functional Gain - ABCB5 ENSG00000004846 CDS Human protein_coding chr7:20668362 chr7:20668361 synonymous SNV . 0 20 hm7G_associated_SNPs_34854 0 0 0 0 1 ABCB5 chr7:20668311 3'AG 20668311 Downstream 51bp 32061 chr18 2784502 2784502 1 + C T GBM 2784503 + 2784483 2784523 41 CAGAGATGGAGATCGAATTCGAAGTAATGGAAAGTTTGGGG CAGAGATGGAGATCGAATTTGAAGTAATGGAAAGTTTGGGG < 41bp 0.515923094495633 0.71937879689074 NA NA prediction 0.406911404790214 Functional Gain - SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2784503 chr18:2784502 stopgain 0.998 1 20 hm7G_associated_SNPs_34855 0 0 1 0 1 SMCHD1 chr18:2784448 3'AG 2784448 Downstream 55bp 32062 chrX 15790710 15790710 1 + C T SKCM 15790711 + 15790691 15790731 41 CCTGGGGTTCTGAGCACACCGTGGACAGCAAATGCTTCCCA CCTGGGGTTCTGAGCACACTGTGGACAGCAAATGCTTCCCA < 41bp 0.508212758482385 0.711667143591939 NA NA prediction 0.406908770219108 Functional Gain - CA5B ENSG00000169239 CDS Human protein_coding chrX:15790711 chrX:15790710 synonymous SNV . 0 20 hm7G_associated_SNPs_34857 0 0 0 0 2 CA5B chrX:15790619 3'AG 15790619 Downstream 92bp 32063 chrX 15790710 15790710 1 + C T SKCM 15790711 + 15790691 15790731 41 CCTGGGGTTCTGAGCACACCGTGGACAGCAAATGCTTCCCA CCTGGGGTTCTGAGCACACTGTGGACAGCAAATGCTTCCCA < 41bp 0.508212758482385 0.711667143591939 NA NA prediction 0.406908770219108 Functional Gain - CA5B ENSG00000169239 CDS Human protein_coding chrX:15790711 chrX:15790710 synonymous SNV . 0 20 hm7G_associated_SNPs_34857 0 0 0 0 2 CA5B chrX:15790737 5'GT 15790737 Upstream 28bp 32064 chr11 20622728 20622728 1 + G A rs143482044 20622729 + 20622709 20622749 41 CAGCCAACAGCCCGGAGGCGGCGGCGGCGCAGGGCCACCCG CAGCCAACAGCCCGGAGGCAGCGGCGGCGCAGGGCCACCCG < 41bp 0.592062449399468 0.795516822314659 NA NA prediction 0.406908745830382 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20622729 chr11:20622728 synonymous SNV . 0 20 hm7G_associated_SNPs_34858 0 0 0 0 1 SLC6A5 chr11:20622675 3'AG 20622675 Downstream 54bp 32065 chr10 28970433 28970433 1 + G A rs79472556 28970434 + 28970414 28970454 41 GACATGTGCAATTACAGAGGGCTGCACGATGTTCTCTCTCC GACATGTGCAATTACAGAGAGCTGCACGATGTTCTCTCTCC < 41bp 0.505700089289804 0.709152554122485 NA NA prediction 0.406904929665361 Functional Gain - BAMBI ENSG00000095739 CDS Human protein_coding chr10:28970434 chr10:28970433 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_34859 0 0 0 0 1 BAMBI chr10:28970474 5'GT 28970474 Upstream 42bp 32066 chr9 129458221 129458221 1 + C T PRAD 129458222 + 129458202 129458242 41 AGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGGCCTC AGAGCCCCTACGGCAGCAGTGACCCCTTCCAGCAGGGCCTC < 41bp 0.522510713017838 0.725961052471141 NA NA prediction 0.406900678906605 Functional Gain - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458222 chr9:129458221 synonymous SNV . 0 20 hm7G_associated_SNPs_34861 0 0 0 0 2 LMX1B chr9:129458261 5'GT 129458261 Upstream 41bp 32067 chr9 129458221 129458221 1 + C T PRAD 129458222 + 129458202 129458242 41 AGAGCCCCTACGGCAGCAGCGACCCCTTCCAGCAGGGCCTC AGAGCCCCTACGGCAGCAGTGACCCCTTCCAGCAGGGCCTC < 41bp 0.522510713017838 0.725961052471141 NA NA prediction 0.406900678906605 Functional Gain - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129458222 chr9:129458221 synonymous SNV . 0 20 hm7G_associated_SNPs_34861 0 0 0 0 2 LMX1B chr9:129458282 5'GT 129458282 Upstream 62bp 32068 chr19 45317503 45317503 1 + G A THCA 45317504 + 45317484 45317524 41 TCCAGCTGCTCTGCCGGGGGGACGGCAGCCCCAGCCCGGAG TCCAGCTGCTCTGCCGGGGAGACGGCAGCCCCAGCCCGGAG < 41bp 0.535648434770074 0.739097934905461 NA NA prediction 0.406899000270774 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45317504 chr19:45317503 synonymous SNV . 0 20 hm7G_associated_SNPs_34862 0 0 1 0 2 BCAM chr19:45317409 3'AG 45317409 Downstream 95bp 32069 chr19 45317503 45317503 1 + G A THCA 45317504 + 45317484 45317524 41 TCCAGCTGCTCTGCCGGGGGGACGGCAGCCCCAGCCCGGAG TCCAGCTGCTCTGCCGGGGAGACGGCAGCCCCAGCCCGGAG < 41bp 0.535648434770074 0.739097934905461 NA NA prediction 0.406899000270774 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45317504 chr19:45317503 synonymous SNV . 0 20 hm7G_associated_SNPs_34862 0 0 1 0 2 BCAM chr19:45317545 5'GT 45317545 Upstream 43bp 32070 chr12 46231437 46231437 1 + C T COAD 46231438 + 46231418 46231458 41 GAGGTGCTATACATGCTCACGGAAATGGGAGATGTTGCTTG GAGGTGCTATACATGCTCATGGAAATGGGAGATGTTGCTTG < 41bp 0.536564170640358 0.740012694166043 NA NA prediction 0.406897047051369 Functional Gain - ARID2 ENSG00000189079 CDS Human protein_coding chr12:46231438 chr12:46231437 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_34863 0 0 1 0 1 ARID2 chr12:46231490 5'GT 46231490 Upstream 54bp 32071 chr5 167836972 167836972 1 + C T LGG 167836973 + 167836953 167836993 41 GGCAGAGAAGGTCAGATTGCGCCTTCGATATGAAGAGGCTA GGCAGAGAAGGTCAGATTGTGCCTTCGATATGAAGAGGCTA < 41bp 0.534639179622932 0.738084328717135 NA NA prediction 0.406890298188406 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167836973 chr5:167836972 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34865 0 0 1 0 2 WWC1 chr5:167836927 3'AG 167836927 Downstream 46bp 32072 chr5 167836972 167836972 1 + C T LGG 167836973 + 167836953 167836993 41 GGCAGAGAAGGTCAGATTGCGCCTTCGATATGAAGAGGCTA GGCAGAGAAGGTCAGATTGTGCCTTCGATATGAAGAGGCTA < 41bp 0.534639179622932 0.738084328717135 NA NA prediction 0.406890298188406 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167836973 chr5:167836972 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34865 0 0 1 0 2 WWC1 chr5:167837000 5'GT 167837000 Upstream 29bp 32073 chr4 8288324 8288324 1 + C T STAD 8288325 + 8288305 8288345 41 GCAACGTGCCCCTGTCCAGCGGTTCTGGCTTCATCATGTCA GCAACGTGCCCCTGTCCAGTGGTTCTGGCTTCATCATGTCA < 41bp 0.541153194722451 0.744596168337655 NA NA prediction 0.406885947230406 Functional Gain - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8288325 chr4:8288324 synonymous SNV . 0 20 hm7G_associated_SNPs_34868 0 0 0 0 1 HTRA3 chr4:8288288 3'AG 8288288 Downstream 37bp 32074 chrX 153694096 153694096 1 + G T UCEC 153694097 + 153694077 153694117 41 TGGTGCATCTCAGAGCACAGGTGCCAGCTGCGGACCCACTG TGGTGCATCTCAGAGCACATGTGCCAGCTGCGGACCCACTG < 41bp 0.355434226718389 0.703442581209499 NA NA prediction 0.406885162418997 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153694097 chrX:153694096 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34869 0 0 0 0 2 PLXNA3 chrX:153694000 3'AG 153694000 Downstream 97bp 32075 chrX 153694096 153694096 1 + G T UCEC 153694097 + 153694077 153694117 41 TGGTGCATCTCAGAGCACAGGTGCCAGCTGCGGACCCACTG TGGTGCATCTCAGAGCACATGTGCCAGCTGCGGACCCACTG < 41bp 0.355434226718389 0.703442581209499 NA NA prediction 0.406885162418997 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153694097 chrX:153694096 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_34869 0 0 0 0 2 PLXNA3 chrX:153694190 5'GT 153694190 Upstream 95bp 32076 chr7 30921892 30921892 1 + C T STAD 30921893 + 30921873 30921913 41 CCTGCAGCCGGGGCTCCTGCGTGACTGGAGGACTGAGAGGC CCTGCAGCCGGGGCTCCTGTGTGACTGGAGGACTGAGAGGC < 41bp 0.526315799739341 0.729756305418131 NA NA prediction 0.40688101135758 Functional Gain - MINDY4 ENSG00000106125;ENSG00000240583;ENSG00000250424 CDS Human other chr7:30921893 chr7:30921892 nonsynonymous SNV 0.083 0 20 hm7G_associated_SNPs_34871 0 0 0 0 2 MINDY4 chr7:30921796 3'AG 30921796 Downstream 97bp 32077 chr7 30921892 30921892 1 + C T STAD 30921893 + 30921873 30921913 41 CCTGCAGCCGGGGCTCCTGCGTGACTGGAGGACTGAGAGGC CCTGCAGCCGGGGCTCCTGTGTGACTGGAGGACTGAGAGGC < 41bp 0.526315799739341 0.729756305418131 NA NA prediction 0.40688101135758 Functional Gain - MINDY4 ENSG00000106125;ENSG00000240583;ENSG00000250424 CDS Human other chr7:30921893 chr7:30921892 nonsynonymous SNV 0.083 0 20 hm7G_associated_SNPs_34871 0 0 0 0 2 MINDY4 chr7:30921976 5'GT 30921976 Upstream 85bp 32078 chr16 50339757 50339757 1 + C T COAD 50339758 + 50339738 50339778 41 TGGAGAAGGGCTTTGAGCGCGAGGTGAGGGCCCCCAGCAGC TGGAGAAGGGCTTTGAGCGTGAGGTGAGGGCCCCCAGCAGC < 41bp 0.535523355959704 0.738961181837434 NA NA prediction 0.40687565175546 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50339758 chr16:50339757 synonymous SNV . 0 20 hm7G_associated_SNPs_34872 0 0 1 0 2 ADCY7 chr16:50339688 3'AG 50339688 Downstream 70bp 32079 chr16 50339757 50339757 1 + C T COAD 50339758 + 50339738 50339778 41 TGGAGAAGGGCTTTGAGCGCGAGGTGAGGGCCCCCAGCAGC TGGAGAAGGGCTTTGAGCGTGAGGTGAGGGCCCCCAGCAGC < 41bp 0.535523355959704 0.738961181837434 NA NA prediction 0.40687565175546 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50339758 chr16:50339757 synonymous SNV . 0 20 hm7G_associated_SNPs_34872 0 0 1 0 2 ADCY7 chr16:50339760 5'GT 50339760 Upstream 4bp 32080 chr6 159184435 159184435 1 + C T rs140709967 159184436 + 159184416 159184456 41 ACTCATTTGTCTTCAGTGGCGTAACCCCAGCTCAGCTGAGG ACTCATTTGTCTTCAGTGGTGTAACCCCAGCTCAGCTGAGG < 41bp 0.514250431881759 0.717686549348306 NA NA prediction 0.406872234933093 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159184436 chr6:159184435 synonymous SNV . 0 20 hm7G_associated_SNPs_34873 0 0 0 0 1 SYTL3 chr6:159184336 3'AG 159184336 Downstream 100bp 32081 chr12 54936449 54936449 1 + C T COAD 54936450 + 54936430 54936470 41 TGCCTATCGGGAGGTGTCTCGGGCCTTCCACCTAAACTGAA TGCCTATCGGGAGGTGTCTTGGGCCTTCCACCTAAACTGAA < 41bp 0.524815158060746 0.728250826075623 NA NA prediction 0.406871336029753 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54936450 chr12:54936449 nonsynonymous SNV 0.909 4 20 hm7G_associated_SNPs_34874 0 0 1 0 1 NCKAP1L chr12:54936359 3'AG 54936359 Downstream 91bp 32082 chrX 48385628 48385628 1 + C T UCEC 48385629 + 48385609 48385649 41 GGTGGTGATCGCCTTTCTCCGCCAGCATCCCCTCCGCTTCA GGTGGTGATCGCCTTTCTCTGCCAGCATCCCCTCCGCTTCA < 41bp 0.533920835420703 0.73735541373978 NA NA prediction 0.406869156638153 Functional Gain - EBP ENSG00000147155 CDS Human protein_coding chrX:48385629 chrX:48385628 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_34875 0 0 1 0 2 EBP chrX:48385543 3'AG 48385543 Downstream 86bp 32083 chrX 48385628 48385628 1 + C T UCEC 48385629 + 48385609 48385649 41 GGTGGTGATCGCCTTTCTCCGCCAGCATCCCCTCCGCTTCA GGTGGTGATCGCCTTTCTCTGCCAGCATCCCCTCCGCTTCA < 41bp 0.533920835420703 0.73735541373978 NA NA prediction 0.406869156638153 Functional Gain - EBP ENSG00000147155 CDS Human protein_coding chrX:48385629 chrX:48385628 nonsynonymous SNV 0.993 3 20 hm7G_associated_SNPs_34875 0 0 1 0 2 EBP chrX:48385673 5'GT 48385673 Upstream 46bp 32084 chr6 32609253 32609253 1 + G A rs9272702 32609254 + 32609234 32609274 41 TTGGAGGTTTTGACCCGCAGGGTGCACTGAGAAACATGGCT TTGGAGGTTTTGACCCGCAAGGTGCACTGAGAAACATGGCT < 41bp 0.503294481276771 0.706727053492673 NA NA prediction 0.406865144431805 Functional Gain - HLA-DQA1 ENSG00000196735 CDS Human protein_coding chr6:32609254 chr6:32609253 synonymous SNV . 0 20 hm7G_associated_SNPs_34877 0 0 0 3 1 HLA-DQA1 chr6:32609335 5'GT 32609335 Upstream 83bp 32085 chr11 113268059 113268059 1 + G A rs11604671 113268060 + 113268040 113268080 41 GCTGTCGCTGCGCCAGCCCGGGGAGGTGAGTGTGTGGGCTG GCTGTCGCTGCGCCAGCCCAGGGAGGTGAGTGTGTGGGCTG < 41bp 0.479330689915242 0.703430424837473 NA NA prediction 0.406860849674946 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113268060 chr11:113268059 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_34880 0 0 0 0 1 ANKK1 chr11:113268064 5'GT 113268064 Upstream 6bp 32086 chr11 119058144 119058144 1 + G A SKCM 119058145 + 119058125 119058165 41 CATAGTGAAAGATGAGGGTGGTTTTGGCTTCAGTGTCACCC CATAGTGAAAGATGAGGGTAGTTTTGGCTTCAGTGTCACCC < 41bp 0.571881653448255 0.775307161803535 NA NA prediction 0.406851016710561 Functional Gain - PDZD3 ENSG00000172367 CDS Human protein_coding chr11:119058145 chr11:119058144 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_34883 0 0 0 0 1 PDZD3 chr11:119058168 5'GT 119058168 Upstream 25bp 32087 chr9 125273139 125273139 1 + G A GBM 125273140 + 125273120 125273160 41 CTTCTGGGCCTCCCCATCCGGCCAGAGCAGCAGGCTGTGTT CTTCTGGGCCTCCCCATCCAGCCAGAGCAGCAGGCTGTGTT < 41bp 0.496954578219795 0.703424646418859 NA NA prediction 0.406849292837719 Functional Gain - OR1J2 ENSG00000197233 CDS Human protein_coding chr9:125273140 chr9:125273139 nonsynonymous SNV 0.836 0 20 hm7G_associated_SNPs_34884 0 0 0 0 1 OR1J2 chr9:125273068 3'AG 125273068 Downstream 72bp 32088 chr10 35842023 35842023 1 + C T CESC 35842024 + 35842004 35842044 41 AAGCGGATTGTTTTAGGGGCGATCCTGCTGGCCTCCAAGGT AAGCGGATTGTTTTAGGGGTGATCCTGCTGGCCTCCAAGGT < 41bp 0.540444171925908 0.74386876152421 NA NA prediction 0.406849179196604 Functional Gain - CCNY ENSG00000108100 CDS Human protein_coding chr10:35842024 chr10:35842023 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_34885 0 0 1 0 2 CCNY chr10:35841947 3'AG 35841947 Downstream 77bp 32089 chr10 35842023 35842023 1 + C T CESC 35842024 + 35842004 35842044 41 AAGCGGATTGTTTTAGGGGCGATCCTGCTGGCCTCCAAGGT AAGCGGATTGTTTTAGGGGTGATCCTGCTGGCCTCCAAGGT < 41bp 0.540444171925908 0.74386876152421 NA NA prediction 0.406849179196604 Functional Gain - CCNY ENSG00000108100 CDS Human protein_coding chr10:35842024 chr10:35842023 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_34885 0 0 1 0 2 CCNY chr10:35842113 5'GT 35842113 Upstream 91bp 32090 chr8 37996371 37996371 1 + C T UCEC 37996372 + 37996352 37996392 41 CCATGCTTCAAGTATCCTCCGAAGGATCTCACTTACCGCCC CCATGCTTCAAGTATCCTCTGAAGGATCTCACTTACCGCCC < 41bp 0.528791969748204 0.732214970116587 NA NA prediction 0.406846000736764 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37996372 chr8:37996371 nonsynonymous SNV 0.502 4 20 hm7G_associated_SNPs_34888 0 0 1 0 2 ASH2L chr8:37996334 3'AG 37996334 Downstream 38bp 32091 chr8 37996371 37996371 1 + C T UCEC 37996372 + 37996352 37996392 41 CCATGCTTCAAGTATCCTCCGAAGGATCTCACTTACCGCCC CCATGCTTCAAGTATCCTCTGAAGGATCTCACTTACCGCCC < 41bp 0.528791969748204 0.732214970116587 NA NA prediction 0.406846000736764 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37996372 chr8:37996371 nonsynonymous SNV 0.502 4 20 hm7G_associated_SNPs_34888 0 0 1 0 2 ASH2L chr8:37996393 5'GT 37996393 Upstream 23bp 32092 chr12 32778624 32778624 1 + C T BRCA 32778625 + 32778605 32778645 41 AAGAGCCCCAAGATGGATCCGAGATAATGAAGTGACAATGT AAGAGCCCCAAGATGGATCTGAGATAATGAAGTGACAATGT < 41bp 0.524711956108168 0.728132455670733 NA NA prediction 0.406840999125129 Functional Gain - FGD4 ENSG00000139132 CDS Human protein_coding chr12:32778625 chr12:32778624 stopgain 0.999 0 20 hm7G_associated_SNPs_34890 0 0 0 4 2 FGD4 chr12:32778588 3'AG 32778588 Downstream 37bp 32093 chr12 32778624 32778624 1 + C T BRCA 32778625 + 32778605 32778645 41 AAGAGCCCCAAGATGGATCCGAGATAATGAAGTGACAATGT AAGAGCCCCAAGATGGATCTGAGATAATGAAGTGACAATGT < 41bp 0.524711956108168 0.728132455670733 NA NA prediction 0.406840999125129 Functional Gain - FGD4 ENSG00000139132 CDS Human protein_coding chr12:32778625 chr12:32778624 stopgain 0.999 0 20 hm7G_associated_SNPs_34890 0 0 0 4 2 FGD4 chr12:32778713 5'GT 32778713 Upstream 90bp 32094 chr5 178996343 178996343 1 + G T STAD 178996344 + 178996324 178996364 41 TTTAATGATGGAGGAAGAAGGGATGGTGATTGTTGGTCTGC TTTAATGATGGAGGAAGAATGGATGGTGATTGTTGGTCTGC < 41bp 0.708854882604001 0.91227495346791 NA NA prediction 0.406840141727818 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178996344 chr5:178996343 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34891 0 0 1 0 2 RUFY1 chr5:178996303 3'AG 178996303 Downstream 41bp 32095 chr5 178996343 178996343 1 + G T STAD 178996344 + 178996324 178996364 41 TTTAATGATGGAGGAAGAAGGGATGGTGATTGTTGGTCTGC TTTAATGATGGAGGAAGAATGGATGGTGATTGTTGGTCTGC < 41bp 0.708854882604001 0.91227495346791 NA NA prediction 0.406840141727818 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178996344 chr5:178996343 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34891 0 0 1 0 2 RUFY1 chr5:178996426 5'GT 178996426 Upstream 84bp 32096 chr3 11067966 11067966 1 + C T rs138166453 11067967 + 11067947 11067987 41 ATTCGTGCACCAGCATGTTCGCAGGATTCGTCATCTTCTCC ATTCGTGCACCAGCATGTTTGCAGGATTCGTCATCTTCTCC < 41bp 0.532423171991973 0.735842666844858 NA NA prediction 0.40683898970577 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11067967 chr3:11067966 synonymous SNV . 0 20 hm7G_associated_SNPs_34892 0 0 0 0 2 SLC6A1 chr3:11067921 3'AG 11067921 Downstream 46bp 32097 chr3 11067966 11067966 1 + C T rs138166453 11067967 + 11067947 11067987 41 ATTCGTGCACCAGCATGTTCGCAGGATTCGTCATCTTCTCC ATTCGTGCACCAGCATGTTTGCAGGATTCGTCATCTTCTCC < 41bp 0.532423171991973 0.735842666844858 NA NA prediction 0.40683898970577 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11067967 chr3:11067966 synonymous SNV . 0 20 hm7G_associated_SNPs_34892 0 0 0 0 2 SLC6A1 chr3:11068045 5'GT 11068045 Upstream 80bp 32098 chr20 3003439 3003439 1 + G A STAD 3003440 + 3003420 3003460 41 GGCTTTGTGAGCCGGATCCGGGCACAGCGCTGCCAGATGGT GGCTTTGTGAGCCGGATCCAGGCACAGCGCTGCCAGATGGT < 41bp 0.54023818611165 0.743656666314266 NA NA prediction 0.406836960405231 Functional Gain - PTPRA ENSG00000132670 CDS Human protein_coding chr20:3003440 chr20:3003439 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34893 0 0 1 0 1 PTPRA chr20:3003470 5'GT 3003470 Upstream 32bp 32099 chr15 101567928 101567928 1 + C T LAML 101567929 + 101567909 101567949 41 GACGACGTGCAGTACCTGACGGACAGGCAGCTGGAGCAGCT GACGACGTGCAGTACCTGATGGACAGGCAGCTGGAGCAGCT < 41bp 0.560084233372578 0.763502319081762 NA NA prediction 0.406836171418367 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101567929 chr15:101567928 nonsynonymous SNV 0.931 3 20 hm7G_associated_SNPs_34894 0 0 0 0 2 LRRK1 chr15:101567843 3'AG 101567843 Downstream 86bp 32100 chr15 101567928 101567928 1 + C T LAML 101567929 + 101567909 101567949 41 GACGACGTGCAGTACCTGACGGACAGGCAGCTGGAGCAGCT GACGACGTGCAGTACCTGATGGACAGGCAGCTGGAGCAGCT < 41bp 0.560084233372578 0.763502319081762 NA NA prediction 0.406836171418367 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101567929 chr15:101567928 nonsynonymous SNV 0.931 3 20 hm7G_associated_SNPs_34894 0 0 0 0 2 LRRK1 chr15:101568002 5'GT 101568002 Upstream 75bp 32101 chr5 78411676 78411676 1 + G T UCEC 78411677 + 78411657 78411697 41 AGAAGAGGGGCTACGTAAAGGCAGGACCCTGGACTCCTGAA AGAAGAGGGGCTACGTAAATGCAGGACCCTGGACTCCTGAA < 41bp 0.709132857194852 0.912550902555689 NA NA prediction 0.406836090721674 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78411677 chr5:78411676 nonsynonymous SNV 0.957 3 20 hm7G_associated_SNPs_34895 0 0 0 0 2 BHMT chr5:78411590 3'AG 78411590 Downstream 87bp 32102 chr5 78411676 78411676 1 + G T UCEC 78411677 + 78411657 78411697 41 AGAAGAGGGGCTACGTAAAGGCAGGACCCTGGACTCCTGAA AGAAGAGGGGCTACGTAAATGCAGGACCCTGGACTCCTGAA < 41bp 0.709132857194852 0.912550902555689 NA NA prediction 0.406836090721674 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78411677 chr5:78411676 nonsynonymous SNV 0.957 3 20 hm7G_associated_SNPs_34895 0 0 0 0 2 BHMT chr5:78411722 5'GT 78411722 Upstream 47bp 32103 chr4 88959640 88959640 1 + C T UCEC 88959641 + 88959621 88959661 41 TAGGGCTCCCTTTGGGCCCCGAAATGGAACCGCGTAAGTGT TAGGGCTCCCTTTGGGCCCTGAAATGGAACCGCGTAAGTGT < 41bp 0.524370710342633 0.727787158817686 NA NA prediction 0.406832896950105 Functional Gain - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88959641 chr4:88959640 stopgain 0.686 1 20 hm7G_associated_SNPs_34896 0 0 0 0 1 PKD2 chr4:88959653 5'GT 88959653 Upstream 14bp 32104 chr16 50741800 50741800 1 + C T UCEC 50741801 + 50741781 50741821 41 GATCTTGCCACGGTGAAAGCGAATGGATTGGCTGCCTTCCT GATCTTGCCACGGTGAAAGTGAATGGATTGGCTGCCTTCCT < 41bp 0.506787667009532 0.710202092530245 NA NA prediction 0.406828851041427 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50741801 chr16:50741800 nonsynonymous SNV 0.922 1 20 hm7G_associated_SNPs_34898 0 0 0 0 2 NOD2 chr16:50741766 3'AG 50741766 Downstream 35bp 32105 chr16 50741800 50741800 1 + C T UCEC 50741801 + 50741781 50741821 41 GATCTTGCCACGGTGAAAGCGAATGGATTGGCTGCCTTCCT GATCTTGCCACGGTGAAAGTGAATGGATTGGCTGCCTTCCT < 41bp 0.506787667009532 0.710202092530245 NA NA prediction 0.406828851041427 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50741801 chr16:50741800 nonsynonymous SNV 0.922 1 20 hm7G_associated_SNPs_34898 0 0 0 0 2 NOD2 chr16:50741871 5'GT 50741871 Upstream 72bp 32106 chr2 242142872 242142872 1 + G A SARC 242142873 + 242142853 242142893 41 CCCCTGGACCACGTGCGCAGGTACTTCGGGGAGAAGGTGGC CCCCTGGACCACGTGCGCAAGTACTTCGGGGAGAAGGTGGC < 41bp 0.559796322287039 0.763208502674748 NA NA prediction 0.406824360775418 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242142873 chr2:242142872 nonsynonymous SNV 0.966 0 20 hm7G_associated_SNPs_34901 0 0 0 0 1 ANO7 chr2:242142913 5'GT 242142913 Upstream 42bp 32107 chr20 60838705 60838705 1 + C T rs35907950 60838706 + 60838686 60838726 41 CTCCCATGTTCAGCAGAAGCGACTTCAGCGTGTGGACCATC CTCCCATGTTCAGCAGAAGTGACTTCAGCGTGTGGACCATC < 41bp 0.551271974487673 0.754683499259706 NA NA prediction 0.406823049544066 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60838706 chr20:60838705 synonymous SNV . 0 20 hm7G_associated_SNPs_34902 0 0 1 0 2 OSBPL2 chr20:60838672 3'AG 60838672 Downstream 34bp 32108 chr20 60838705 60838705 1 + C T rs35907950 60838706 + 60838686 60838726 41 CTCCCATGTTCAGCAGAAGCGACTTCAGCGTGTGGACCATC CTCCCATGTTCAGCAGAAGTGACTTCAGCGTGTGGACCATC < 41bp 0.551271974487673 0.754683499259706 NA NA prediction 0.406823049544066 Functional Gain - OSBPL2 ENSG00000130703 CDS Human protein_coding chr20:60838706 chr20:60838705 synonymous SNV . 0 20 hm7G_associated_SNPs_34902 0 0 1 0 2 OSBPL2 chr20:60838747 5'GT 60838747 Upstream 43bp 32109 chr11 93806252 93806252 1 + C T LUSC 93806253 + 93806233 93806273 41 AGGAAAATACTGGAAGGTTCGGTATACTGAATTTGTTGATG AGGAAAATACTGGAAGGTTTGGTATACTGAATTTGTTGATG < 41bp 0.51293197336084 0.716342639190331 NA NA prediction 0.406821331658983 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93806253 chr11:93806252 nonsynonymous SNV 0.888 2 20 hm7G_associated_SNPs_34903 0 0 0 0 2 HEPHL1 chr11:93806191 3'AG 93806191 Downstream 62bp 32110 chr11 93806252 93806252 1 + C T LUSC 93806253 + 93806233 93806273 41 AGGAAAATACTGGAAGGTTCGGTATACTGAATTTGTTGATG AGGAAAATACTGGAAGGTTTGGTATACTGAATTTGTTGATG < 41bp 0.51293197336084 0.716342639190331 NA NA prediction 0.406821331658983 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93806253 chr11:93806252 nonsynonymous SNV 0.888 2 20 hm7G_associated_SNPs_34903 0 0 0 0 2 HEPHL1 chr11:93806330 5'GT 93806330 Upstream 79bp 32111 chr6 26370798 26370798 1 + G A LGG 26370799 + 26370779 26370819 41 CATCAGAAATTCCCTCCTCGGCCTGGAAAAGACAGCCAGCA CATCAGAAATTCCCTCCTCAGCCTGGAAAAGACAGCCAGCA < 41bp 0.526741344830398 0.730151549880023 NA NA prediction 0.406820410099249 Functional Gain - BTN3A2 ENSG00000186470 CDS Human protein_coding chr6:26370799 chr6:26370798 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_34905 0 0 0 0 1 BTN3A2 chr6:26370831 5'GT 26370831 Upstream 34bp 32112 chr11 10515002 10515002 1 + G A UCEC 10515003 + 10514983 10515023 41 AGGACTGTGGCAGAGAAGCGGGGCCGGAAGATCACCCTGCG AGGACTGTGGCAGAGAAGCAGGGCCGGAAGATCACCCTGCG < 41bp 0.535742836043141 0.739152081690631 NA NA prediction 0.40681849129498 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10515003 chr11:10515002 nonsynonymous SNV 0.936 1 20 hm7G_associated_SNPs_34906 0 0 0 0 1 AMPD3 chr11:10515090 5'GT 10515090 Upstream 89bp 32113 chr15 64701938 64701938 1 + C T UCEC 64701939 + 64701919 64701959 41 AGCTGAGAGAACTTCGACACGCCTCTCGACTTTCTAAGAAG AGCTGAGAGAACTTCGACATGCCTCTCGACTTTCTAAGAAG < 41bp 0.538951676971816 0.742357377493156 NA NA prediction 0.40681140104268 Functional Gain - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64701939 chr15:64701938 synonymous SNV . 0 20 hm7G_associated_SNPs_34910 0 0 0 0 1 TRIP4 chr15:64702027 5'GT 64702027 Upstream 90bp 32114 chr15 96877739 96877739 1 + C T GBM 96877740 + 96877720 96877760 41 CGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGG CGCCTTTATGGACCACATATGGATCTTCCAAGAGCAAGTGG < 41bp 0.536567549721387 0.739969717835397 NA NA prediction 0.406804336228019 Functional Gain - NR2F2 ENSG00000185551 CDS Human protein_coding chr15:96877740 chr15:96877739 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_34912 0 0 1 0 1 NR2F2 chr15:96877832 5'GT 96877832 Upstream 94bp 32115 chr1 193172941 193172941 1 + G T LUSC 193172942 + 193172922 193172962 41 AAGGAGGGTGCATCTGCCCGGAAGACTCAGACTCCTGCAGC AAGGAGGGTGCATCTGCCCTGAAGACTCAGACTCCTGCAGC < 41bp 0.374373473343804 0.703399273117946 NA NA prediction 0.406798546235892 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193172942 chr1:193172941 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_34913 0 0 1 0 2 CDC73 chr1:193172925 3'AG 193172925 Downstream 17bp 32116 chr1 193172941 193172941 1 + G T LUSC 193172942 + 193172922 193172962 41 AAGGAGGGTGCATCTGCCCGGAAGACTCAGACTCCTGCAGC AAGGAGGGTGCATCTGCCCTGAAGACTCAGACTCCTGCAGC < 41bp 0.374373473343804 0.703399273117946 NA NA prediction 0.406798546235892 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193172942 chr1:193172941 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_34913 0 0 1 0 2 CDC73 chr1:193172982 5'GT 193172982 Upstream 42bp 32117 chr14 51079995 51079995 1 + C T SKCM 51079996 + 51079976 51080016 41 GAGTCTGATATTTCTTGTTCGAGACTGGAGTTTCCCATACG GAGTCTGATATTTCTTGTTTGAGACTGGAGTTTCCCATACG < 41bp 0.491412245692562 0.703398519489231 NA NA prediction 0.406797038978462 Functional Gain - ATL1 ENSG00000198513 CDS Human protein_coding chr14:51079996 chr14:51079995 stopgain 1.000 1 20 hm7G_associated_SNPs_34914 0 0 0 0 1 ATL1 chr14:51080069 5'GT 51080069 Upstream 75bp 32118 chr6 47681616 47681616 1 + C T UCEC 47681617 + 47681597 47681637 41 CCCAACAAAAATGCCAGCTCGGATTTGTTGCAGTCAGTGAA CCCAACAAAAATGCCAGCTTGGATTTGTTGCAGTCAGTGAA < 41bp 0.533582295533042 0.736978907122706 NA NA prediction 0.406793223179328 Functional Gain - ADGRF4 ENSG00000153294 CDS Human protein_coding chr6:47681617 chr6:47681616 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_34916 0 0 0 0 1 ADGRF4 chr6:47681534 3'AG 47681534 Downstream 83bp 32119 chr1 109275927 109275927 1 + G T LUAD 109275928 + 109275908 109275948 41 TTGGGGGTGAAATTATATAGGCTGGGCCCTAATGGCATCCG TTGGGGGTGAAATTATATATGCTGGGCCCTAATGGCATCCG < 41bp 0.702569959770933 0.905964849741596 NA NA prediction 0.406789779941325 Functional Gain - FNDC7 ENSG00000143107 CDS Human protein_coding chr1:109275928 chr1:109275927 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_34917 0 0 0 0 1 FNDC7 chr1:109275894 3'AG 109275894 Downstream 34bp 32120 chr12 52700020 52700020 1 + C T PRAD 52700021 + 52700001 52700041 41 CCAAGCTGGGCCTGGACATCGAGATCGCCACCTACAGGCGC CCAAGCTGGGCCTGGACATTGAGATCGCCACCTACAGGCGC < 41bp 0.495145342975656 0.703394296015636 NA NA prediction 0.406788592031273 Functional Gain - KRT86 ENSG00000170442 CDS Human protein_coding chr12:52700021 chr12:52700020 synonymous SNV . 0 20 hm7G_associated_SNPs_34918 0 0 0 0 1 KRT86 chr12:52700064 5'GT 52700064 Upstream 45bp 32121 chr11 27077014 27077014 1 + G T HNSC 27077015 + 27076995 27077035 41 AAAGGCAGAAGCACTTGACGGGGCTCATTTGATGCAGATCC AAAGGCAGAAGCACTTGACTGGGCTCATTTGATGCAGATCC < 41bp 0.362465049289478 0.703393378655027 NA NA prediction 0.406786757310054 Functional Gain - BBOX1 ENSG00000129151 CDS Human antisense chr11:27077015 chr11:27077014 nonsynonymous SNV 0.657 3 20 hm7G_associated_SNPs_34920 0 0 0 0 1 BBOX1-AS1 chr11:27076940 3'AG 27076940 Downstream 75bp 32122 chr19 42383229 42383229 1 + G A HNSC 42383230 + 42383210 42383250 41 CCCCTGAGTTCTTGGGCCCGGGCGAGGACCCCAATGGTACG CCCCTGAGTTCTTGGGCCCAGGCGAGGACCCCAATGGTACG < 41bp 0.573590252733209 0.776981341311821 NA NA prediction 0.406782177157224 Functional Gain - CD79A ENSG00000105369 CDS Human protein_coding chr19:42383230 chr19:42383229 synonymous SNV . 0 20 hm7G_associated_SNPs_34922 0 0 0 0 1 CD79A chr19:42383245 5'GT 42383245 Upstream 17bp 32123 chr1 150529682 150529682 1 + G T UCEC 150529683 + 150529663 150529703 41 CCGCCCAGCCCGGACCCCAGGCACCCTCCAGCGTCAGGTGC CCGCCCAGCCCGGACCCCATGCACCCTCCAGCGTCAGGTGC < 41bp 0.339731599692983 0.703390307575348 NA NA prediction 0.406780615150696 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150529683 chr1:150529682 nonsynonymous SNV 0.900 3 20 hm7G_associated_SNPs_34924 0 0 1 0 1 ADAMTSL4 chr1:150529626 3'AG 150529626 Downstream 57bp 32124 chr8 86351992 86351992 1 + C T UCEC 86351993 + 86351973 86352013 41 GCCAAGGGGGAAAACCAGTCGCCCGTTGAGCTGCATACTAA GCCAAGGGGGAAAACCAGTTGCCCGTTGAGCTGCATACTAA < 41bp 0.540574828385103 0.743963456404617 NA NA prediction 0.406777256039028 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86351993 chr8:86351992 nonsynonymous SNV 0.910 4 20 hm7G_associated_SNPs_34925 0 0 0 0 1 CA3 chr8:86351941 3'AG 86351941 Downstream 52bp 32125 chr8 145726987 145726987 1 + C T LGG 145726988 + 145726968 145727008 41 ATACTCCAAGCGACTAGACCGGAGTGTCTCCTACCAGCTGA ATACTCCAAGCGACTAGACTGGAGTGTCTCCTACCAGCTGA < 41bp 0.502375668436921 0.705763933610304 NA NA prediction 0.406776530346766 Functional Gain - PPP1R16A ENSG00000160972 CDS Human protein_coding chr8:145726988 chr8:145726987 nonsynonymous SNV 0.619 2 20 hm7G_associated_SNPs_34926 0 0 1 0 1 PPP1R16A chr8:145726903 3'AG 145726903 Downstream 85bp 32126 chr7 76903056 76903056 1 + C T UCEC 76903057 + 76903037 76903077 41 TACATTATCTGAGAGAAGGCGAGAGCTTCACAAGGAAGTTG TACATTATCTGAGAGAAGGTGAGAGCTTCACAAGGAAGTTG < 41bp 0.497469652052499 0.703388037297721 NA NA prediction 0.406776074595442 Functional Gain - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76903057 chr7:76903056 stopgain 0.734 0 20 hm7G_associated_SNPs_34927 0 0 0 0 2 CCDC146 chr7:76903011 3'AG 76903011 Downstream 46bp 32127 chr7 76903056 76903056 1 + C T UCEC 76903057 + 76903037 76903077 41 TACATTATCTGAGAGAAGGCGAGAGCTTCACAAGGAAGTTG TACATTATCTGAGAGAAGGTGAGAGCTTCACAAGGAAGTTG < 41bp 0.497469652052499 0.703388037297721 NA NA prediction 0.406776074595442 Functional Gain - CCDC146 ENSG00000135205 CDS Human protein_coding chr7:76903057 chr7:76903056 stopgain 0.734 0 20 hm7G_associated_SNPs_34927 0 0 0 0 2 CCDC146 chr7:76903106 5'GT 76903106 Upstream 51bp 32128 chr5 86645120 86645120 1 + C T UCEC 86645121 + 86645101 86645141 41 GACCAATGAAAATATTCAGCGATTTAAAATATGTCCAACGC GACCAATGAAAATATTCAGTGATTTAAAATATGTCCAACGC < 41bp 0.506700472462771 0.710088227105156 NA NA prediction 0.40677550928477 Functional Gain - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86645121 chr5:86645120 stopgain 1.000 1 20 hm7G_associated_SNPs_34928 0 0 1 0 2 RASA1 chr5:86645031 3'AG 86645031 Downstream 90bp 32129 chr5 86645120 86645120 1 + C T UCEC 86645121 + 86645101 86645141 41 GACCAATGAAAATATTCAGCGATTTAAAATATGTCCAACGC GACCAATGAAAATATTCAGTGATTTAAAATATGTCCAACGC < 41bp 0.506700472462771 0.710088227105156 NA NA prediction 0.40677550928477 Functional Gain - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86645121 chr5:86645120 stopgain 1.000 1 20 hm7G_associated_SNPs_34928 0 0 1 0 2 RASA1 chr5:86645181 5'GT 86645181 Upstream 62bp 32130 chr6 107956624 107956624 1 + C T STAD 107956625 + 107956605 107956645 41 GGGCCTGAGGACCTGGAGCCGCCGCTCAAAAGGAGGTGCCT GGGCCTGAGGACCTGGAGCTGCCGCTCAAAAGGAGGTGCCT < 41bp 0.497204720121612 0.703386763074895 NA NA prediction 0.40677352614979 Functional Gain - SOBP ENSG00000112320 CDS Human protein_coding chr6:107956625 chr6:107956624 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_34930 0 0 0 0 1 SOBP chr6:107956673 5'GT 107956673 Upstream 50bp 32131 chr9 90396072 90396072 1 + G T UCEC 90396073 + 90396053 90396093 41 TGGAGACTGGAAAGTCCAAGGTCACAGAGGTGCATCTGGTG TGGAGACTGGAAAGTCCAATGTCACAGAGGTGCATCTGGTG < 41bp 0.399601539435621 0.703384830179701 NA NA prediction 0.406769660359402 Functional Gain - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90396073 chr9:90396072 . . 0 20 hm7G_associated_SNPs_34933 0 0 0 0 2 CTSL3P chr9:90396050 3'AG 90396050 Downstream 23bp 32132 chr9 90396072 90396072 1 + G T UCEC 90396073 + 90396053 90396093 41 TGGAGACTGGAAAGTCCAAGGTCACAGAGGTGCATCTGGTG TGGAGACTGGAAAGTCCAATGTCACAGAGGTGCATCTGGTG < 41bp 0.399601539435621 0.703384830179701 NA NA prediction 0.406769660359402 Functional Gain - CTSL3P ENSG00000188029 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr9:90396073 chr9:90396072 . . 0 20 hm7G_associated_SNPs_34933 0 0 0 0 2 CTSL3P chr9:90396143 5'GT 90396143 Upstream 72bp 32133 chr17 48628506 48628506 1 + C T BLCA 48628507 + 48628487 48628527 41 CTTCCAGGCCCGGAAGCATCGGCCCAAGCCGCACCTGGACA CTTCCAGGCCCGGAAGCATTGGCCCAAGCCGCACCTGGACA < 41bp 0.546981172165662 0.750365328616382 NA NA prediction 0.406768312901441 Functional Gain - SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48628507 chr17:48628506 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_34934 0 0 1 0 2 SPATA20 chr17:48628551 5'GT 48628551 Upstream 46bp 32134 chr17 48628506 48628506 1 + C T BLCA 48628507 + 48628487 48628527 41 CTTCCAGGCCCGGAAGCATCGGCCCAAGCCGCACCTGGACA CTTCCAGGCCCGGAAGCATTGGCCCAAGCCGCACCTGGACA < 41bp 0.546981172165662 0.750365328616382 NA NA prediction 0.406768312901441 Functional Gain - SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48628507 chr17:48628506 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_34934 0 0 1 0 2 SPATA20 chr17:48628583 5'GT 48628583 Upstream 78bp 32135 chr2 85598268 85598268 1 + C T READ 85598269 + 85598249 85598289 41 CCCTCCGACACTACCTCTTCGGGCCTCCAAAGCTCCACCAG CCCTCCGACACTACCTCTTTGGGCCTCCAAAGCTCCACCAG < 41bp 0.546133342927009 0.749515693889343 NA NA prediction 0.406764701924667 Functional Gain - ELMOD3 ENSG00000115459 CDS Human protein_coding chr2:85598269 chr2:85598268 synonymous SNV . 0 20 hm7G_associated_SNPs_34935 0 0 1 0 1 ELMOD3 chr2:85598209 3'AG 85598209 Downstream 60bp 32136 chr9 100116928 100116928 1 + G T GBM 100116929 + 100116909 100116949 41 CTGGAGAAGGAAGCTGCCCGGATAGAGTTGGTTGAAAGTGT CTGGAGAAGGAAGCTGCCCTGATAGAGTTGGTTGAAAGTGT < 41bp 0.360019733914703 0.703381919647701 NA NA prediction 0.406763839295402 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100116929 chr9:100116928 nonsynonymous SNV 0.798 3 20 hm7G_associated_SNPs_34936 0 0 0 0 2 CCDC180 chr9:100116851 3'AG 100116851 Downstream 78bp 32137 chr9 100116928 100116928 1 + G T GBM 100116929 + 100116909 100116949 41 CTGGAGAAGGAAGCTGCCCGGATAGAGTTGGTTGAAAGTGT CTGGAGAAGGAAGCTGCCCTGATAGAGTTGGTTGAAAGTGT < 41bp 0.360019733914703 0.703381919647701 NA NA prediction 0.406763839295402 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100116929 chr9:100116928 nonsynonymous SNV 0.798 3 20 hm7G_associated_SNPs_34936 0 0 0 0 2 CCDC180 chr9:100116995 5'GT 100116995 Upstream 68bp 32138 chr16 84495716 84495716 1 + G A rs182679301 84495717 + 84495697 84495737 41 TGCAGAGGGTCTTCCAGACGGAGAACCTGGGAGCGCTTGGT TGCAGAGGGTCTTCCAGACAGAGAACCTGGGAGCGCTTGGT < 41bp 0.511674271700574 0.715055525000825 NA NA prediction 0.406762506600501 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84495717 chr16:84495716 synonymous SNV . 0 20 hm7G_associated_SNPs_34937 0 0 0 0 1 ATP2C2 chr16:84495735 5'GT 84495735 Upstream 20bp 32139 chr12 58168468 58168468 1 + C T UCEC 58168469 + 58168449 58168489 41 CATAGAACAAGAACTCTGGCGAGGTATGCGTGGAGCCTGTG CATAGAACAAGAACTCTGGTGAGGTATGCGTGGAGCCTGTG < 41bp 0.503249699441662 0.706630135169639 NA NA prediction 0.406760871455955 Functional Gain - EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58168469 chr12:58168468 stopgain 0.001 0 20 hm7G_associated_SNPs_34939 0 0 1 0 2 EEF1AKMT3 chr12:58168412 3'AG 58168412 Downstream 57bp 32140 chr12 58168468 58168468 1 + C T UCEC 58168469 + 58168449 58168489 41 CATAGAACAAGAACTCTGGCGAGGTATGCGTGGAGCCTGTG CATAGAACAAGAACTCTGGTGAGGTATGCGTGGAGCCTGTG < 41bp 0.503249699441662 0.706630135169639 NA NA prediction 0.406760871455955 Functional Gain - EEF1AKMT3 ENSG00000123427 CDS Human protein_coding chr12:58168469 chr12:58168468 stopgain 0.001 0 20 hm7G_associated_SNPs_34939 0 0 1 0 2 EEF1AKMT3 chr12:58168550 5'GT 58168550 Upstream 83bp 32141 chr3 138189866 138189866 1 + C T SKCM 138189867 + 138189847 138189887 41 CTCCATGAGGCTGGTGCTTCGGGTAAATCTCTCCGGTCCCC CTCCATGAGGCTGGTGCTTTGGGTAAATCTCTCCGGTCCCC < 41bp 0.490432966201613 0.703378702272793 NA NA prediction 0.406757404545586 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138189867 chr3:138189866 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_34940 0 0 0 0 1 ESYT3 chr3:138189868 5'GT 138189868 Upstream 3bp 32142 chr2 183597246 183597246 1 + C T GBM 183597247 + 183597227 183597267 41 TTGTTTGACTTCACAGACACGACTCAGGCTTAGTGGCATGT TTGTTTGACTTCACAGACATGACTCAGGCTTAGTGGCATGT < 41bp 0.504441656089172 0.707818797062679 NA NA prediction 0.406754281947016 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183597247 chr2:183597246 stopgain 0.998 1 20 hm7G_associated_SNPs_34941 0 0 1 0 2 DNAJC10 chr2:183597226 3'AG 183597226 Downstream 21bp 32143 chr2 183597246 183597246 1 + C T GBM 183597247 + 183597227 183597267 41 TTGTTTGACTTCACAGACACGACTCAGGCTTAGTGGCATGT TTGTTTGACTTCACAGACATGACTCAGGCTTAGTGGCATGT < 41bp 0.504441656089172 0.707818797062679 NA NA prediction 0.406754281947016 Functional Gain - DNAJC10 ENSG00000077232 CDS Human protein_coding chr2:183597247 chr2:183597246 stopgain 0.998 1 20 hm7G_associated_SNPs_34941 0 0 1 0 2 DNAJC10 chr2:183597269 5'GT 183597269 Upstream 24bp 32144 chr19 41630690 41630690 1 + C T SARC 41630691 + 41630671 41630711 41 CCGGCGCTGAAGGACCGCGCGGCCATGCCTTACACAGACGC CCGGCGCTGAAGGACCGCGTGGCCATGCCTTACACAGACGC < 41bp 0.497837994088915 0.703376580690448 NA NA prediction 0.406753161380897 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41630691 chr19:41630690 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_34942 0 0 0 0 1 CYP2F1 chr19:41630624 3'AG 41630624 Downstream 67bp 32145 chr1 27627805 27627805 1 + C T STAD 27627806 + 27627786 27627826 41 GGCACACTTTCGCCTGGCCCGCTGCCTCTTTGAGCTCAAGT GGCACACTTTCGCCTGGCCTGCTGCCTCTTTGAGCTCAAGT < 41bp 0.551506085551272 0.75488188326712 NA NA prediction 0.406751595431694 Functional Gain - WDTC1 ENSG00000142784 CDS Human protein_coding chr1:27627806 chr1:27627805 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_34943 0 0 0 0 1 WDTC1 chr1:27627717 3'AG 27627717 Downstream 89bp 32146 chrX 152089277 152089277 1 + C T UCEC 152089278 + 152089258 152089298 41 ACCCAGGAGACACAGGCACCGTTTATCGCGAAGAGGTAAGT ACCCAGGAGACACAGGCACTGTTTATCGCGAAGAGGTAAGT < 41bp 0.504083586906502 0.707457525808109 NA NA prediction 0.406747877803214 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152089278 chrX:152089277 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_34946 0 0 0 0 3 ZNF185 chrX:152089251 3'AG 152089251 Downstream 27bp 32147 chrX 152089277 152089277 1 + C T UCEC 152089278 + 152089258 152089298 41 ACCCAGGAGACACAGGCACCGTTTATCGCGAAGAGGTAAGT ACCCAGGAGACACAGGCACTGTTTATCGCGAAGAGGTAAGT < 41bp 0.504083586906502 0.707457525808109 NA NA prediction 0.406747877803214 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152089278 chrX:152089277 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_34946 0 0 0 0 3 ZNF185 chrX:152089254 3'AG 152089254 Downstream 24bp 32148 chrX 152089277 152089277 1 + C T UCEC 152089278 + 152089258 152089298 41 ACCCAGGAGACACAGGCACCGTTTATCGCGAAGAGGTAAGT ACCCAGGAGACACAGGCACTGTTTATCGCGAAGAGGTAAGT < 41bp 0.504083586906502 0.707457525808109 NA NA prediction 0.406747877803214 Functional Gain - ZNF185 ENSG00000147394 CDS Human protein_coding chrX:152089278 chrX:152089277 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_34946 0 0 0 0 3 ZNF185 chrX:152089292 5'GT 152089292 Upstream 16bp 32149 chr12 107048084 107048084 1 + C T COAD 107048085 + 107048065 107048105 41 TGCATTACCTGGATTTCTGCGAGAAGAATGATACCCAACCT TGCATTACCTGGATTTCTGTGAGAAGAATGATACCCAACCT < 41bp 0.517016340545268 0.720389270819045 NA NA prediction 0.406745860547555 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107048085 chr12:107048084 synonymous SNV . 0 20 hm7G_associated_SNPs_34948 0 0 0 0 2 RFX4 chr12:107048006 3'AG 107048006 Downstream 79bp 32150 chr12 107048084 107048084 1 + C T COAD 107048085 + 107048065 107048105 41 TGCATTACCTGGATTTCTGCGAGAAGAATGATACCCAACCT TGCATTACCTGGATTTCTGTGAGAAGAATGATACCCAACCT < 41bp 0.517016340545268 0.720389270819045 NA NA prediction 0.406745860547555 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107048085 chr12:107048084 synonymous SNV . 0 20 hm7G_associated_SNPs_34948 0 0 0 0 2 RFX4 chr12:107048129 5'GT 107048129 Upstream 46bp 32151 chr1 41215344 41215344 1 + C T LUSC 41215345 + 41215325 41215365 41 TCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTAT TCACACAGAAGATAACAAGTGCCGGACTCTACAGGTATTAT < 41bp 0.509396476388408 0.712768294399645 NA NA prediction 0.406743636022474 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41215345 chr1:41215344 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_34949 0 0 1 0 2 NFYC chr1:41215245 3'AG 41215245 Downstream 100bp 32152 chr1 41215344 41215344 1 + C T LUSC 41215345 + 41215325 41215365 41 TCACACAGAAGATAACAAGCGCCGGACTCTACAGGTATTAT TCACACAGAAGATAACAAGTGCCGGACTCTACAGGTATTAT < 41bp 0.509396476388408 0.712768294399645 NA NA prediction 0.406743636022474 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41215345 chr1:41215344 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_34949 0 0 1 0 2 NFYC chr1:41215358 5'GT 41215358 Upstream 15bp 32153 chr22 45204250 45204250 1 + C T BRCA 45204251 + 45204231 45204271 41 CCATCGTCTATTTCCACTACGGGCTGAACAGCCGGAACAAG CCATCGTCTATTTCCACTATGGGCTGAACAGCCGGAACAAG < 41bp 0.54953806811061 0.752905068709177 NA NA prediction 0.406734001197134 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45204251 chr22:45204250 synonymous SNV . 0 20 hm7G_associated_SNPs_34953 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45204187 3'AG 45204187 Downstream 64bp 32154 chr22 45204250 45204250 1 + C T BRCA 45204251 + 45204231 45204271 41 CCATCGTCTATTTCCACTACGGGCTGAACAGCCGGAACAAG CCATCGTCTATTTCCACTATGGGCTGAACAGCCGGAACAAG < 41bp 0.54953806811061 0.752905068709177 NA NA prediction 0.406734001197134 Functional Gain - ARHGAP8;PRR5-ARHGAP8 ENSG00000241484;ENSG00000248405 CDS Human other chr22:45204251 chr22:45204250 synonymous SNV . 0 20 hm7G_associated_SNPs_34953 0 0 0 0 2 ARHGAP8;PRR5-ARHGAP8 chr22:45204318 5'GT 45204318 Upstream 69bp 32155 chr1 149761663 149761663 1 + G A SKCM 149761664 + 149761644 149761684 41 GACATCCCCACTCCTGGAGGGGAATCTGGTCACCCTGAGCT GACATCCCCACTCCTGGAGAGGAATCTGGTCACCCTGAGCT < 41bp 0.556360840357116 0.75972604946828 NA NA prediction 0.406730418222327 Functional Gain - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149761664 chr1:149761663 nonsynonymous SNV 0.108 3 20 hm7G_associated_SNPs_34954 0 0 0 0 1 FCGR1A chr1:149761610 3'AG 149761610 Downstream 54bp 32156 chr16 31371096 31371096 1 + C T COAD 31371097 + 31371077 31371117 41 TCCTCCCGCAACTTTGCCACGATGATGAACTTCGTGAGAGC TCCTCCCGCAACTTTGCCATGATGATGAACTTCGTGAGAGC < 41bp 0.532539543606893 0.735904429762715 NA NA prediction 0.406729772311645 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31371097 chr16:31371096 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_34956 0 0 0 0 1 ITGAX chr16:31371151 5'GT 31371151 Upstream 56bp 32157 chr14 24620580 24620580 1 + C T LGG 24620581 + 24620561 24620601 41 GGAGTGTGTGAGGACCAGGCGAAGGAAGGTATCAGCTGTGC GGAGTGTGTGAGGACCAGGTGAAGGAAGGTATCAGCTGTGC < 41bp 0.49463271026233 0.70336461587861 NA NA prediction 0.406729231757219 Functional Gain - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24620581 chr14:24620580 stopgain 0.990 0 20 hm7G_associated_SNPs_34957 0 0 1 0 2 RNF31 chr14:24620508 3'AG 24620508 Downstream 73bp 32158 chr14 24620580 24620580 1 + C T LGG 24620581 + 24620561 24620601 41 GGAGTGTGTGAGGACCAGGCGAAGGAAGGTATCAGCTGTGC GGAGTGTGTGAGGACCAGGTGAAGGAAGGTATCAGCTGTGC < 41bp 0.49463271026233 0.70336461587861 NA NA prediction 0.406729231757219 Functional Gain - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24620581 chr14:24620580 stopgain 0.990 0 20 hm7G_associated_SNPs_34957 0 0 1 0 2 RNF31 chr14:24620588 5'GT 24620588 Upstream 9bp 32159 chr9 35842684 35842684 1 + C T COAD 35842685 + 35842665 35842705 41 CAGTGCTGGACAGTGGAGGCGTCCTCAGCCTGGAGCTCCAG CAGTGCTGGACAGTGGAGGTGTCCTCAGCCTGGAGCTCCAG < 41bp 0.522017747402592 0.725379343443672 NA NA prediction 0.40672319208216 Functional Gain - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35842685 chr9:35842684 synonymous SNV . 0 20 hm7G_associated_SNPs_34961 0 0 0 0 1 TMEM8B chr9:35842714 5'GT 35842714 Upstream 31bp 32160 chr16 81914544 81914544 1 + C T COAD 81914545 + 81914525 81914565 41 AATTCAAAAAGGATTCGTCCGTGTTCATCCTGGGGTGAGGC AATTCAAAAAGGATTCGTCTGTGTTCATCCTGGGGTGAGGC < 41bp 0.523403503555486 0.726763356280421 NA NA prediction 0.40671970544987 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81914545 chr16:81914544 synonymous SNV . 0 20 hm7G_associated_SNPs_34963 0 0 0 0 2 PLCG2 chr16:81914515 3'AG 81914515 Downstream 30bp 32161 chr16 81914544 81914544 1 + C T COAD 81914545 + 81914525 81914565 41 AATTCAAAAAGGATTCGTCCGTGTTCATCCTGGGGTGAGGC AATTCAAAAAGGATTCGTCTGTGTTCATCCTGGGGTGAGGC < 41bp 0.523403503555486 0.726763356280421 NA NA prediction 0.40671970544987 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81914545 chr16:81914544 synonymous SNV . 0 20 hm7G_associated_SNPs_34963 0 0 0 0 2 PLCG2 chr16:81914558 5'GT 81914558 Upstream 15bp 32162 chr15 41105974 41105974 1 + C T LUSC 41105975 + 41105955 41105995 41 CCCTGCAGAGCAGGCTTCTCGACCCTGGACGCAACCCCGCG CCCTGCAGAGCAGGCTTCTTGACCCTGGACGCAACCCCGCG < 41bp 0.508079375295261 0.711437909666971 NA NA prediction 0.40671706874342 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105975 chr15:41105974 stopgain 0.001 0 20 hm7G_associated_SNPs_34965 0 0 1 0 2 ZFYVE19 chr15:41105911 3'AG 41105911 Downstream 64bp 32163 chr15 41105974 41105974 1 + C T LUSC 41105975 + 41105955 41105995 41 CCCTGCAGAGCAGGCTTCTCGACCCTGGACGCAACCCCGCG CCCTGCAGAGCAGGCTTCTTGACCCTGGACGCAACCCCGCG < 41bp 0.508079375295261 0.711437909666971 NA NA prediction 0.40671706874342 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41105975 chr15:41105974 stopgain 0.001 0 20 hm7G_associated_SNPs_34965 0 0 1 0 2 ZFYVE19 chr15:41106009 5'GT 41106009 Upstream 36bp 32164 chr2 105713664 105713664 1 + C T UCEC 105713665 + 105713645 105713685 41 ACCGGCTGGGAAAGCACGACGTGACCTGCACAGTCTCAGGG ACCGGCTGGGAAAGCACGATGTGACCTGCACAGTCTCAGGG < 41bp 0.507804803272341 0.711162787753358 NA NA prediction 0.406715968962035 Functional Gain - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105713665 chr2:105713664 synonymous SNV . 0 20 hm7G_associated_SNPs_34966 0 0 1 0 1 MRPS9 chr2:105713613 3'AG 105713613 Downstream 52bp 32165 chr20 43034773 43034773 1 + G T LUAD 43034774 + 43034754 43034794 41 GCCCTGTGTGCCATCTGCGGGGACCGGGCCACGGGCAAACA GCCCTGTGTGCCATCTGCGTGGACCGGGCCACGGGCAAACA < 41bp 0.713998521968792 0.917355940844535 NA NA prediction 0.406714837751486 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034774 chr20:43034773 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_34967 0 0 0 0 2 HNF4A chr20:43034698 3'AG 43034698 Downstream 76bp 32166 chr20 43034773 43034773 1 + G T LUAD 43034774 + 43034754 43034794 41 GCCCTGTGTGCCATCTGCGGGGACCGGGCCACGGGCAAACA GCCCTGTGTGCCATCTGCGTGGACCGGGCCACGGGCAAACA < 41bp 0.713998521968792 0.917355940844535 NA NA prediction 0.406714837751486 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43034774 chr20:43034773 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_34967 0 0 0 0 2 HNF4A chr20:43034872 5'GT 43034872 Upstream 100bp 32167 chr15 91424215 91424215 1 + C T rs146566561 91424216 + 91424196 91424236 41 CCGCCCCTGAGGGGCTGCCCGTACCTCCAGAAAGCAGTGGC CCGCCCCTGAGGGGCTGCCTGTACCTCCAGAAAGCAGTGGC < 41bp 0.515484688780193 0.718841289019129 NA NA prediction 0.406713200477872 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91424216 chr15:91424215 synonymous SNV . 0 20 hm7G_associated_SNPs_34968 0 0 0 0 2 FURIN chr15:91424160 3'AG 91424160 Downstream 56bp 32168 chr15 91424215 91424215 1 + C T rs146566561 91424216 + 91424196 91424236 41 CCGCCCCTGAGGGGCTGCCCGTACCTCCAGAAAGCAGTGGC CCGCCCCTGAGGGGCTGCCTGTACCTCCAGAAAGCAGTGGC < 41bp 0.515484688780193 0.718841289019129 NA NA prediction 0.406713200477872 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91424216 chr15:91424215 synonymous SNV . 0 20 hm7G_associated_SNPs_34968 0 0 0 0 2 FURIN chr15:91424270 5'GT 91424270 Upstream 56bp 32169 chr8 39775652 39775652 1 + C T UCEC 39775653 + 39775633 39775673 41 CACAGACCACAAGTCACAGCGCCTTGCACGTCTAGTTCTGG CACAGACCACAAGTCACAGTGCCTTGCACGTCTAGTTCTGG < 41bp 0.521051634373021 0.724405153878744 NA NA prediction 0.406707039011447 Functional Gain - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39775653 chr8:39775652 nonsynonymous SNV 0.681 2 20 hm7G_associated_SNPs_34971 0 0 0 2 2 IDO1 chr8:39775607 3'AG 39775607 Downstream 46bp 32170 chr8 39775652 39775652 1 + C T UCEC 39775653 + 39775633 39775673 41 CACAGACCACAAGTCACAGCGCCTTGCACGTCTAGTTCTGG CACAGACCACAAGTCACAGTGCCTTGCACGTCTAGTTCTGG < 41bp 0.521051634373021 0.724405153878744 NA NA prediction 0.406707039011447 Functional Gain - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39775653 chr8:39775652 nonsynonymous SNV 0.681 2 20 hm7G_associated_SNPs_34971 0 0 0 2 2 IDO1 chr8:39775726 5'GT 39775726 Upstream 75bp 32171 chr8 22862972 22862972 1 + C T UCEC 22862973 + 22862953 22862993 41 AGACCACCACAAAGACCGTCGCTTTGCTTATGGGAGGTAGG AGACCACCACAAAGACCGTTGCTTTGCTTATGGGAGGTAGG < 41bp 0.536109925405551 0.739462910783927 NA NA prediction 0.406705970756751 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862973 chr8:22862972 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34972 0 0 0 0 2 RHOBTB2 chr8:22862885 3'AG 22862885 Downstream 88bp 32172 chr8 22862972 22862972 1 + C T UCEC 22862973 + 22862953 22862993 41 AGACCACCACAAAGACCGTCGCTTTGCTTATGGGAGGTAGG AGACCACCACAAAGACCGTTGCTTTGCTTATGGGAGGTAGG < 41bp 0.536109925405551 0.739462910783927 NA NA prediction 0.406705970756751 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862973 chr8:22862972 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_34972 0 0 0 0 2 RHOBTB2 chr8:22862988 5'GT 22862988 Upstream 17bp 32173 chr1 1266841 1266841 1 + G A STAD 1266842 + 1266822 1266862 41 GGGGACTACGTGCTGGGGGGGCTGTTCCCCCTGGGCGAGGC GGGGACTACGTGCTGGGGGAGCTGTTCCCCCTGGGCGAGGC < 41bp 0.57980898465738 0.783161821347573 NA NA prediction 0.406705673380385 Functional Gain - TAS1R3 ENSG00000169962 CDS Human protein_coding chr1:1266842 chr1:1266841 nonsynonymous SNV 0.352 5 20 hm7G_associated_SNPs_34973 0 0 1 0 1 TAS1R3 chr1:1266916 5'GT 1266916 Upstream 76bp 32174 chr1 150123102 150123102 1 + G A BLCA 150123103 + 150123083 150123123 41 TCATCTTGTCCTGGGGCAGGGACCTCAGGATGGAAACCAGC TCATCTTGTCCTGGGGCAGAGACCTCAGGATGGAAACCAGC < 41bp 0.545870939251547 0.749223775452009 NA NA prediction 0.406705672400924 Functional Gain - PLEKHO1 ENSG00000023902 CDS Human protein_coding chr1:150123103 chr1:150123102 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_34974 0 0 0 0 1 PLEKHO1 chr1:150123102 3'AG 150123102 Downstream 1bp 32175 chr9 36087908 36087908 1 + C T rs139106894 36087909 + 36087889 36087929 41 CTCCTCCCTCTACAGGCCTCGATGGGGCTAAATTGCATTGT CTCCTCCCTCTACAGGCCTTGATGGGGCTAAATTGCATTGT < 41bp 0.513763335471962 0.717115492587783 NA NA prediction 0.406704314231641 Functional Gain - RECK ENSG00000122707 CDS Human protein_coding chr9:36087909 chr9:36087908 synonymous SNV . 0 20 hm7G_associated_SNPs_34975 0 0 0 0 1 RECK chr9:36087958 5'GT 36087958 Upstream 51bp 32176 chrX 37935887 37935887 1 + C T STAD 37935888 + 37935868 37935908 41 TCCCAAAACTGACACTGGGCGGAGCTATAGCTTGGACTTAG TCCCAAAACTGACACTGGGTGGAGCTATAGCTTGGACTTAG < 41bp 0.54789225125889 0.751241660487464 NA NA prediction 0.406698818457148 Functional Gain - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37935888 chrX:37935887 nonsynonymous SNV 0.767 1 20 hm7G_associated_SNPs_34977 0 0 0 0 2 SYTL5 chrX:37935820 3'AG 37935820 Downstream 68bp 32177 chrX 37935887 37935887 1 + C T STAD 37935888 + 37935868 37935908 41 TCCCAAAACTGACACTGGGCGGAGCTATAGCTTGGACTTAG TCCCAAAACTGACACTGGGTGGAGCTATAGCTTGGACTTAG < 41bp 0.54789225125889 0.751241660487464 NA NA prediction 0.406698818457148 Functional Gain - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37935888 chrX:37935887 nonsynonymous SNV 0.767 1 20 hm7G_associated_SNPs_34977 0 0 0 0 2 SYTL5 chrX:37935954 5'GT 37935954 Upstream 68bp 32178 chr17 53851104 53851104 1 + G A rs535279167 53851105 + 53851085 53851125 41 TATGTCTACCTTCGGCAGCGGCGAGACCTGGACATGGAAGG TATGTCTACCTTCGGCAGCAGCGAGACCTGGACATGGAAGG < 41bp 0.535386078858209 0.738728649686862 NA NA prediction 0.406685141657306 Functional Gain - PCTP ENSG00000141179 CDS Human protein_coding chr17:53851105 chr17:53851104 nonsynonymous SNV 0.219 0 20 hm7G_associated_SNPs_34978 0 0 1 0 2 PCTP chr17:53851017 3'AG 53851017 Downstream 88bp 32179 chr17 53851104 53851104 1 + G A rs535279167 53851105 + 53851085 53851125 41 TATGTCTACCTTCGGCAGCGGCGAGACCTGGACATGGAAGG TATGTCTACCTTCGGCAGCAGCGAGACCTGGACATGGAAGG < 41bp 0.535386078858209 0.738728649686862 NA NA prediction 0.406685141657306 Functional Gain - PCTP ENSG00000141179 CDS Human protein_coding chr17:53851105 chr17:53851104 nonsynonymous SNV 0.219 0 20 hm7G_associated_SNPs_34978 0 0 1 0 2 PCTP chr17:53851085 3'AG 53851085 Downstream 20bp 32180 chr12 109845609 109845609 1 + C T SKCM 109845610 + 109845590 109845630 41 TCTTTTCAGGTGATCTGCCCGTTGACACTAGAACTCTCTGT TCTTTTCAGGTGATCTGCCTGTTGACACTAGAACTCTCTGT < 41bp 0.504678292417304 0.708019330647722 NA NA prediction 0.406682076460835 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109845610 chr12:109845609 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_34979 0 0 0 0 1 MYO1H chr12:109845599 3'AG 109845599 Downstream 11bp 32181 chr16 66997442 66997442 1 + C T rs71647890 66997443 + 66997423 66997463 41 GCAGCAGATTTGTCCTCAACGGAAAACAGCAGATCTTCTCC GCAGCAGATTTGTCCTCAATGGAAAACAGCAGATCTTCTCC < 41bp 0.515714997651618 0.719055868842955 NA NA prediction 0.406681742382675 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997443 chr16:66997442 synonymous SNV . 0 20 hm7G_associated_SNPs_34980 0 0 1 0 2 CES3 chr16:66997394 3'AG 66997394 Downstream 49bp 32182 chr16 66997442 66997442 1 + C T rs71647890 66997443 + 66997423 66997463 41 GCAGCAGATTTGTCCTCAACGGAAAACAGCAGATCTTCTCC GCAGCAGATTTGTCCTCAATGGAAAACAGCAGATCTTCTCC < 41bp 0.515714997651618 0.719055868842955 NA NA prediction 0.406681742382675 Functional Gain - CES3 ENSG00000172828 CDS Human protein_coding chr16:66997443 chr16:66997442 synonymous SNV . 0 20 hm7G_associated_SNPs_34980 0 0 1 0 2 CES3 chr16:66997532 5'GT 66997532 Upstream 91bp 32183 chr4 25675970 25675970 1 + G T LUSC 25675971 + 25675951 25675991 41 ACCTGGCCATCCTCGTCGGGGCAGGCATGACCTTCATCGTA ACCTGGCCATCCTCGTCGGTGCAGGCATGACCTTCATCGTA < 41bp 0.346269968431302 0.703338745387021 NA NA prediction 0.406677490774043 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25675971 chr4:25675970 synonymous SNV . 0 20 hm7G_associated_SNPs_34981 0 0 0 0 2 SLC34A2 chr4:25675918 3'AG 25675918 Downstream 53bp 32184 chr4 25675970 25675970 1 + G T LUSC 25675971 + 25675951 25675991 41 ACCTGGCCATCCTCGTCGGGGCAGGCATGACCTTCATCGTA ACCTGGCCATCCTCGTCGGTGCAGGCATGACCTTCATCGTA < 41bp 0.346269968431302 0.703338745387021 NA NA prediction 0.406677490774043 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25675971 chr4:25675970 synonymous SNV . 0 20 hm7G_associated_SNPs_34981 0 0 0 0 2 SLC34A2 chr4:25676034 5'GT 25676034 Upstream 65bp 32185 chr6 159687181 159687181 1 + C T rs180849332 159687182 + 159687162 159687202 41 CTACACGGACTGCCATGGACGGCAATATGTGAAGCGCACGT CTACACGGACTGCCATGGATGGCAATATGTGAAGCGCACGT < 41bp 0.529275927158056 0.732613736751402 NA NA prediction 0.406675619186692 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159687182 chr6:159687181 nonsynonymous SNV 0.689 4 20 hm7G_associated_SNPs_34982 0 0 0 0 2 FNDC1 chr6:159687116 3'AG 159687116 Downstream 66bp 32186 chr6 159687181 159687181 1 + C T rs180849332 159687182 + 159687162 159687202 41 CTACACGGACTGCCATGGACGGCAATATGTGAAGCGCACGT CTACACGGACTGCCATGGATGGCAATATGTGAAGCGCACGT < 41bp 0.529275927158056 0.732613736751402 NA NA prediction 0.406675619186692 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159687182 chr6:159687181 nonsynonymous SNV 0.689 4 20 hm7G_associated_SNPs_34982 0 0 0 0 2 FNDC1 chr6:159687277 5'GT 159687277 Upstream 97bp 32187 chr3 148876567 148876567 1 + C T UCEC 148876568 + 148876548 148876588 41 AGGATGGATTACAGAAATACGAGAGAGGATTAATCTTTTAC AGGATGGATTACAGAAATATGAGAGAGGATTAATCTTTTAC < 41bp 0.49205336618618 0.703337266236712 NA NA prediction 0.406674532473424 Functional Gain - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148876568 chr3:148876567 synonymous SNV . 0 20 hm7G_associated_SNPs_34983 0 0 1 0 1 HPS3 chr3:148876633 5'GT 148876633 Upstream 67bp 32188 chr9 131046827 131046827 1 + C T UCEC 131046828 + 131046808 131046848 41 GCCAGGCTGATGGGACCAGCGAGGAGTCTCTGCACCTTGAC GCCAGGCTGATGGGACCAGTGAGGAGTCTCTGCACCTTGAC < 41bp 0.500367945371582 0.703702585238872 NA NA prediction 0.406669279734581 Functional Gain - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131046828 chr9:131046827 synonymous SNV . 0 20 hm7G_associated_SNPs_34984 0 0 1 0 2 SWI5 chr9:131046789 3'AG 131046789 Downstream 39bp 32189 chr9 131046827 131046827 1 + C T UCEC 131046828 + 131046808 131046848 41 GCCAGGCTGATGGGACCAGCGAGGAGTCTCTGCACCTTGAC GCCAGGCTGATGGGACCAGTGAGGAGTCTCTGCACCTTGAC < 41bp 0.500367945371582 0.703702585238872 NA NA prediction 0.406669279734581 Functional Gain - SWI5 ENSG00000175854 CDS Human protein_coding chr9:131046828 chr9:131046827 synonymous SNV . 0 20 hm7G_associated_SNPs_34984 0 0 1 0 2 SWI5 chr9:131046910 5'GT 131046910 Upstream 84bp 32190 chr3 42243951 42243951 1 + C T rs138190882 42243952 + 42243932 42243972 41 GATGAGCGGAGTAAGAAGCCGGGGACGCCGGGCACCCCAGG GATGAGCGGAGTAAGAAGCTGGGGACGCCGGGCACCCCAGG < 41bp 0.509415224280463 0.712748655123211 NA NA prediction 0.406666861685496 Functional Gain - TRAK1 ENSG00000182606 CDS Human protein_coding chr3:42243952 chr3:42243951 nonsynonymous SNV 0.786 0 20 hm7G_associated_SNPs_34986 0 0 1 0 1 TRAK1 chr3:42243928 3'AG 42243928 Downstream 24bp 32191 chr16 55730230 55730230 1 + C T LGG 55730231 + 55730211 55730251 41 TTTTTCGTCATGCTCCTGGCGCTGGGCCTTGACAGCTCAGT TTTTTCGTCATGCTCCTGGTGCTGGGCCTTGACAGCTCAGT < 41bp 0.546168325163358 0.749498857424995 NA NA prediction 0.406661064523275 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55730231 chr16:55730230 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_34987 0 0 0 0 2 SLC6A2 chr16:55730137 3'AG 55730137 Downstream 94bp 32192 chr16 55730230 55730230 1 + C T LGG 55730231 + 55730211 55730251 41 TTTTTCGTCATGCTCCTGGCGCTGGGCCTTGACAGCTCAGT TTTTTCGTCATGCTCCTGGTGCTGGGCCTTGACAGCTCAGT < 41bp 0.546168325163358 0.749498857424995 NA NA prediction 0.406661064523275 Functional Gain - SLC6A2 ENSG00000103546 CDS Human protein_coding chr16:55730231 chr16:55730230 nonsynonymous SNV 0.989 2 20 hm7G_associated_SNPs_34987 0 0 0 0 2 SLC6A2 chr16:55730249 5'GT 55730249 Upstream 20bp 32193 chr3 133472444 133472444 1 + C T UCEC 133472445 + 133472425 133472465 41 CTGTTCTCTTTCAGGCAAACGAAGCGGATGCTGTGACACTG CTGTTCTCTTTCAGGCAAATGAAGCGGATGCTGTGACACTG < 41bp 0.490711696825797 0.703327986854653 NA NA prediction 0.406655973709307 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133472445 chr3:133472444 stopgain . 0 20 hm7G_associated_SNPs_34989 0 0 1 0 1 TF chr3:133472439 3'AG 133472439 Downstream 6bp 32194 chr3 186383944 186383944 1 + C T BLCA 186383945 + 186383925 186383965 41 AGACCTGATCAATAAAAGGCGACGGGATGGCTACCTTTTCC AGACCTGATCAATAAAAGGTGACGGGATGGCTACCTTTTCC < 41bp 0.512547118799219 0.715874903117542 NA NA prediction 0.406655568636645 Functional Gain - HRG ENSG00000113905 CDS Human protein_coding chr3:186383945 chr3:186383944 stopgain 0.580 1 20 hm7G_associated_SNPs_34991 0 0 0 0 1 HRG chr3:186384003 5'GT 186384003 Upstream 60bp 32195 chr2 1500429 1500429 1 + G A BRCA 1500430 + 1500410 1500450 41 TGTGCACTGTGAGGAGTCTGGGAGGCGCGTGCTGGTGTATT TGTGCACTGTGAGGAGTCTAGGAGGCGCGTGCTGGTGTATT < 41bp 0.541495019843966 0.744821985989763 NA NA prediction 0.406653932291594 Functional Gain - TPO ENSG00000115705 CDS Human protein_coding chr2:1500430 chr2:1500429 nonsynonymous SNV 0.008 4 20 hm7G_associated_SNPs_34992 0 0 0 0 1 TPO chr2:1500367 3'AG 1500367 Downstream 63bp 32196 chr22 24580221 24580221 1 + C T PRAD 24580222 + 24580202 24580242 41 CTGACCTGGCATGTCAAGTCGCTGCCCACGCAGACCATCAC CTGACCTGGCATGTCAAGTTGCTGCCCACGCAGACCATCAC < 41bp 0.551352118542032 0.754678709114657 NA NA prediction 0.406653181145251 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24580222 chr22:24580221 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_34993 0 0 0 0 1 SUSD2 chr22:24580271 5'GT 24580271 Upstream 51bp 32197 chr21 23487365 23487365 1 + G T UCEC 23487366 + 23487346 23487386 41 CACTGCAGAAGCGAGTAGAGGAAGAATACAAGGAAAAAAGT CACTGCAGAAGCGAGTAGATGAAGAATACAAGGAAAAAAGT < 41bp 0.41803484875385 0.703324547696713 NA NA prediction 0.406649095393427 Functional Gain - LINC00308 ENSG00000184856 ncRNA_exonic Human lincRNA chr21:23487366 chr21:23487365 . . 0 20 hm7G_associated_SNPs_34995 0 0 0 0 2 LINC00308 chr21:23487297 3'AG 23487297 Downstream 69bp 32198 chr21 23487365 23487365 1 + G T UCEC 23487366 + 23487346 23487386 41 CACTGCAGAAGCGAGTAGAGGAAGAATACAAGGAAAAAAGT CACTGCAGAAGCGAGTAGATGAAGAATACAAGGAAAAAAGT < 41bp 0.41803484875385 0.703324547696713 NA NA prediction 0.406649095393427 Functional Gain - LINC00308 ENSG00000184856 ncRNA_exonic Human lincRNA chr21:23487366 chr21:23487365 . . 0 20 hm7G_associated_SNPs_34995 0 0 0 0 2 LINC00308 chr21:23487431 5'GT 23487431 Upstream 67bp 32199 chr19 6828671 6828671 1 + C T GBM 6828672 + 6828652 6828692 41 ACGAGGTCAAGCGAGACAACGAGACACTGCGACAGATCACC ACGAGGTCAAGCGAGACAATGAGACACTGCGACAGATCACC < 41bp 0.543390892519151 0.746715091484436 NA NA prediction 0.40664839793057 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828672 chr19:6828671 synonymous SNV . 0 20 hm7G_associated_SNPs_34996 0 0 1 0 2 VAV1 chr19:6828633 3'AG 6828633 Downstream 39bp 32200 chr19 6828671 6828671 1 + C T GBM 6828672 + 6828652 6828692 41 ACGAGGTCAAGCGAGACAACGAGACACTGCGACAGATCACC ACGAGGTCAAGCGAGACAATGAGACACTGCGACAGATCACC < 41bp 0.543390892519151 0.746715091484436 NA NA prediction 0.40664839793057 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828672 chr19:6828671 synonymous SNV . 0 20 hm7G_associated_SNPs_34996 0 0 1 0 2 VAV1 chr19:6828719 5'GT 6828719 Upstream 49bp 32201 chr2 179320828 179320828 1 + C T CESC 179320829 + 179320809 179320849 41 GGAGAGCATCCGAACCACACGACAGTGCTCACTGTCTGTGC GGAGAGCATCCGAACCACATGACAGTGCTCACTGTCTGTGC < 41bp 0.494266445452723 0.703323817777539 NA NA prediction 0.406647635555077 Functional Gain - DFNB59 ENSG00000204311 CDS Human protein_coding chr2:179320829 chr2:179320828 stopgain 0.939 0 20 hm7G_associated_SNPs_34997 2 0 0 0 2 DFNB59 chr2:179320737 3'AG 179320737 Downstream 92bp 32202 chr2 179320828 179320828 1 + C T CESC 179320829 + 179320809 179320849 41 GGAGAGCATCCGAACCACACGACAGTGCTCACTGTCTGTGC GGAGAGCATCCGAACCACATGACAGTGCTCACTGTCTGTGC < 41bp 0.494266445452723 0.703323817777539 NA NA prediction 0.406647635555077 Functional Gain - DFNB59 ENSG00000204311 CDS Human protein_coding chr2:179320829 chr2:179320828 stopgain 0.939 0 20 hm7G_associated_SNPs_34997 2 0 0 0 2 DFNB59 chr2:179320878 5'GT 179320878 Upstream 51bp 32203 chr17 78092118 78092118 1 + C T UCEC 78092119 + 78092099 78092139 41 GAGCCTGGAAGTGCTGGAGCGAGGGGCCTACACACAGGTCA GAGCCTGGAAGTGCTGGAGTGAGGGGCCTACACACAGGTCA < 41bp 0.507218301465131 0.710539052539274 NA NA prediction 0.406641502148287 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78092119 chr17:78092118 stopgain 0.828 0 20 hm7G_associated_SNPs_35000 1 0 1 0 1 GAA chr17:78092156 5'GT 78092156 Upstream 39bp 32204 chr1 32751188 32751188 1 + G T UCEC 32751189 + 32751169 32751209 41 GCCCTGACAACTGTCCAGAGGAGCTGTACCAACTCATGAGG GCCCTGACAACTGTCCAGATGAGCTGTACCAACTCATGAGG < 41bp 0.367723493786777 0.703319500095842 NA NA prediction 0.406639000191684 Functional Gain - LCK ENSG00000182866 CDS Human protein_coding chr1:32751189 chr1:32751188 nonsynonymous SNV 0.990 1 20 hm7G_associated_SNPs_35001 0 0 0 0 1 LCK chr1:32751115 3'AG 32751115 Downstream 74bp 32205 chr5 75950796 75950796 1 + C T LUSC 75950797 + 75950777 75950817 41 ATACAGTCACTGTTGAGAGCGAACAAAGCTAGAGATGACTA ATACAGTCACTGTTGAGAGTGAACAAAGCTAGAGATGACTA < 41bp 0.497660600014099 0.70331930781115 NA NA prediction 0.4066386156223 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75950797 chr5:75950796 nonsynonymous SNV 0.839 4 20 hm7G_associated_SNPs_35003 0 0 1 0 2 IQGAP2 chr5:75950759 3'AG 75950759 Downstream 38bp 32206 chr5 75950796 75950796 1 + C T LUSC 75950797 + 75950777 75950817 41 ATACAGTCACTGTTGAGAGCGAACAAAGCTAGAGATGACTA ATACAGTCACTGTTGAGAGTGAACAAAGCTAGAGATGACTA < 41bp 0.497660600014099 0.70331930781115 NA NA prediction 0.4066386156223 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75950797 chr5:75950796 nonsynonymous SNV 0.839 4 20 hm7G_associated_SNPs_35003 0 0 1 0 2 IQGAP2 chr5:75950828 5'GT 75950828 Upstream 33bp 32207 chr10 134996963 134996963 1 + C T UCEC 134996964 + 134996944 134996984 41 CTGCTGAGCCGGATGCAGGCGGAGGACCCCGGGGACCGGCC CTGCTGAGCCGGATGCAGGTGGAGGACCCCGGGGACCGGCC < 41bp 0.491957664859326 0.70331839934715 NA NA prediction 0.4066367986943 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134996964 chr10:134996963 nonsynonymous SNV 0.836 3 20 hm7G_associated_SNPs_35004 0 0 0 0 1 KNDC1 chr10:134996994 5'GT 134996994 Upstream 32bp 32208 chr5 176306404 176306404 1 + C T COAD 176306405 + 176306385 176306425 41 CAAGATCCCCTTCCTCATTCGGCAGAAGATAATTTCCAGCC CAAGATCCCCTTCCTCATTTGGCAGAAGATAATTTCCAGCC < 41bp 0.528891543265532 0.732205341631937 NA NA prediction 0.406627596732809 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176306405 chr5:176306404 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35007 0 0 0 0 2 UNC5A chr5:176306311 3'AG 176306311 Downstream 94bp 32209 chr5 176306404 176306404 1 + C T COAD 176306405 + 176306385 176306425 41 CAAGATCCCCTTCCTCATTCGGCAGAAGATAATTTCCAGCC CAAGATCCCCTTCCTCATTTGGCAGAAGATAATTTCCAGCC < 41bp 0.528891543265532 0.732205341631937 NA NA prediction 0.406627596732809 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176306405 chr5:176306404 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35007 0 0 0 0 2 UNC5A chr5:176306489 5'GT 176306489 Upstream 86bp 32210 chr11 10791772 10791772 1 + C T UCEC 10791773 + 10791753 10791793 41 GTAGTATGAAAACTGCCTCCGAAAGTTCTATAAGCACCAAA GTAGTATGAAAACTGCCTCTGAAAGTTCTATAAGCACCAAA < 41bp 0.549329742934549 0.752643232016366 NA NA prediction 0.406626978163634 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10791773 chr11:10791772 stopgain 0.998 1 20 hm7G_associated_SNPs_35009 0 0 0 0 1 CTR9 chr11:10791757 3'AG 10791757 Downstream 16bp 32211 chr12 4705861 4705861 1 + C T COAD 4705862 + 4705842 4705882 41 GAAGGACTTTTTCTACTTTCGCAATCACTTCTGCATCACCT GAAGGACTTTTTCTACTTTTGCAATCACTTCTGCATCACCT < 41bp 0.537635137957094 0.740947563764612 NA NA prediction 0.406624851615036 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4705862 chr12:4705861 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_35010 0 0 0 0 1 DYRK4 chr12:4705895 5'GT 4705895 Upstream 35bp 32212 chr5 94024292 94024292 1 + C T GBM 94024293 + 94024273 94024313 41 GTCAAAGAAAATAGGACAGCGGCCTTGTTTTGACTCTCAGA GTCAAAGAAAATAGGACAGTGGCCTTGTTTTGACTCTCAGA < 41bp 0.498268657756182 0.703311682355571 NA NA prediction 0.406623364711141 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94024293 chr5:94024292 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_35011 0 0 1 0 2 SLF1 chr5:94024211 3'AG 94024211 Downstream 82bp 32213 chr5 94024292 94024292 1 + C T GBM 94024293 + 94024273 94024313 41 GTCAAAGAAAATAGGACAGCGGCCTTGTTTTGACTCTCAGA GTCAAAGAAAATAGGACAGTGGCCTTGTTTTGACTCTCAGA < 41bp 0.498268657756182 0.703311682355571 NA NA prediction 0.406623364711141 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94024293 chr5:94024292 nonsynonymous SNV 0.977 0 20 hm7G_associated_SNPs_35011 0 0 1 0 2 SLF1 chr5:94024374 5'GT 94024374 Upstream 83bp 32214 chr11 130064132 130064132 1 + C T GBM 130064133 + 130064113 130064153 41 ACTGATAACCAACACTGAGCGGCGGCATCCCGGCTTTGAGG ACTGATAACCAACACTGAGTGGCGGCATCCCGGCTTTGAGG < 41bp 0.547762659155438 0.751073811703967 NA NA prediction 0.406622305097057 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130064133 chr11:130064132 nonsynonymous SNV 0.562 3 20 hm7G_associated_SNPs_35012 0 0 0 0 2 ST14 chr11:130064044 3'AG 130064044 Downstream 89bp 32215 chr11 130064132 130064132 1 + C T GBM 130064133 + 130064113 130064153 41 ACTGATAACCAACACTGAGCGGCGGCATCCCGGCTTTGAGG ACTGATAACCAACACTGAGTGGCGGCATCCCGGCTTTGAGG < 41bp 0.547762659155438 0.751073811703967 NA NA prediction 0.406622305097057 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130064133 chr11:130064132 nonsynonymous SNV 0.562 3 20 hm7G_associated_SNPs_35012 0 0 0 0 2 ST14 chr11:130064183 5'GT 130064183 Upstream 52bp 32216 chr12 53446251 53446251 1 + C T UCEC 53446252 + 53446232 53446272 41 TCCCTAGTCTGCAAGGTGGCGACGCACAGAAAATGTGAAGC TCCCTAGTCTGCAAGGTGGTGACGCACAGAAAATGTGAAGC < 41bp 0.506862893445824 0.710173457210146 NA NA prediction 0.406621127528645 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53446252 chr12:53446251 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_35013 0 0 1 0 2 TNS2 chr12:53446239 3'AG 53446239 Downstream 13bp 32217 chr12 53446251 53446251 1 + C T UCEC 53446252 + 53446232 53446272 41 TCCCTAGTCTGCAAGGTGGCGACGCACAGAAAATGTGAAGC TCCCTAGTCTGCAAGGTGGTGACGCACAGAAAATGTGAAGC < 41bp 0.506862893445824 0.710173457210146 NA NA prediction 0.406621127528645 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53446252 chr12:53446251 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_35013 0 0 1 0 2 TNS2 chr12:53446276 5'GT 53446276 Upstream 26bp 32218 chr17 79060365 79060365 1 + G A COAD 79060366 + 79060346 79060386 41 AGAATCCTCAGAAGTACTCGGACAAGGAGCTGCAGGTAGGC AGAATCCTCAGAAGTACTCAGACAAGGAGCTGCAGGTAGGC < 41bp 0.524175851290375 0.727483791051977 NA NA prediction 0.406615879523203 Functional Gain - BAIAP2 ENSG00000175866 CDS Human protein_coding chr17:79060366 chr17:79060365 synonymous SNV . 0 20 hm7G_associated_SNPs_35014 0 0 1 0 1 BAIAP2 chr17:79060380 5'GT 79060380 Upstream 16bp 32219 chr10 74692131 74692131 1 + G T OV 74692132 + 74692112 74692152 41 GAAGTGTTTCTGCACTGCCGGGTTCTTGTCTGTGGAGTGTT GAAGTGTTTCTGCACTGCCTGGTTCTTGTCTGTGGAGTGTT < 41bp 0.694929367503961 0.898233517836802 NA NA prediction 0.406608300665682 Functional Gain - OIT3 ENSG00000138315 CDS Human protein_coding chr10:74692132 chr10:74692131 nonsynonymous SNV 0.974 2 20 hm7G_associated_SNPs_35018 0 0 0 0 1 OIT3 chr10:74692112 3'AG 74692112 Downstream 20bp 32220 chr8 70517108 70517108 1 + C T UCEC 70517109 + 70517089 70517129 41 TCACTTGCCCAAATATGAACGGGTCAAAGAACTATGCCAGC TCACTTGCCCAAATATGAATGGGTCAAAGAACTATGCCAGC < 41bp 0.533873268878882 0.737176230514361 NA NA prediction 0.406605923270957 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517109 chr8:70517108 nonsynonymous SNV 0.945 5 20 hm7G_associated_SNPs_35020 0 0 0 0 2 SULF1 chr8:70517038 3'AG 70517038 Downstream 71bp 32221 chr8 70517108 70517108 1 + C T UCEC 70517109 + 70517089 70517129 41 TCACTTGCCCAAATATGAACGGGTCAAAGAACTATGCCAGC TCACTTGCCCAAATATGAATGGGTCAAAGAACTATGCCAGC < 41bp 0.533873268878882 0.737176230514361 NA NA prediction 0.406605923270957 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70517109 chr8:70517108 nonsynonymous SNV 0.945 5 20 hm7G_associated_SNPs_35020 0 0 0 0 2 SULF1 chr8:70517167 5'GT 70517167 Upstream 60bp 32222 chr13 95264604 95264604 1 + C T rs9524559 95264605 + 95264585 95264625 41 TGTTACTAAACCCAGATGCCGAAGGGAATCCATTTGATCAT TGTTACTAAACCCAGATGCTGAAGGGAATCCATTTGATCAT < 41bp 0.533818201404165 0.737119334544682 NA NA prediction 0.406602266281034 Functional Gain - GPR180 ENSG00000152749 CDS Human protein_coding chr13:95264605 chr13:95264604 synonymous SNV . 0 20 hm7G_associated_SNPs_35021 0 0 0 0 1 GPR180 chr13:95264644 5'GT 95264644 Upstream 41bp 32223 chr10 105331285 105331285 1 + G A LUAD 105331286 + 105331266 105331306 41 GAAGCAGTGCTGCTGGAGCGGGGCCCTGCGGCTGGGCTTCA GAAGCAGTGCTGCTGGAGCAGGGCCCTGCGGCTGGGCTTCA < 41bp 0.573472117237708 0.776772878642246 NA NA prediction 0.406601522809075 Functional Gain - NEURL1 ENSG00000107954 CDS Human protein_coding chr10:105331286 chr10:105331285 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35022 0 0 0 0 1 NEURL1 chr10:105331258 3'AG 105331258 Downstream 28bp 32224 chr1 203024613 203024613 1 + C T COAD 203024614 + 203024594 203024634 41 CGCGCGGAGGAGATTGAGACGCGTGTAACCAGTGGCAGCAT CGCGCGGAGGAGATTGAGATGCGTGTAACCAGTGGCAGCAT < 41bp 0.53872762698872 0.742028283240611 NA NA prediction 0.406601312503783 Functional Gain - PPFIA4 ENSG00000143847 CDS Human protein_coding chr1:203024614 chr1:203024613 nonsynonymous SNV 0.866 3 20 hm7G_associated_SNPs_35023 0 0 1 0 1 PPFIA4 chr1:203024560 3'AG 203024560 Downstream 54bp 32225 chr20 43243209 43243209 1 + C T UCEC 43243210 + 43243190 43243230 41 CGACAGGCATGATGGAGGTCGAGTCCTCCTACTCGGACTTC CGACAGGCATGATGGAGGTTGAGTCCTCCTACTCGGACTTC < 41bp 0.531665808802722 0.73496426904154 NA NA prediction 0.406596920477637 Functional Gain - PKIG ENSG00000168734 CDS Human protein_coding chr20:43243210 chr20:43243209 synonymous SNV . 0 20 hm7G_associated_SNPs_35024 0 0 1 0 1 PKIG chr20:43243175 3'AG 43243175 Downstream 35bp 32226 chr16 67680869 67680869 1 + G A CESC 67680870 + 67680850 67680890 41 GGGAGACTTCAGCCACCTCGGCAGTCGGTGTGTGGCCTGCC GGGAGACTTCAGCCACCTCAGCAGTCGGTGTGTGGCCTGCC < 41bp 0.471109877581057 0.703298168936224 NA NA prediction 0.406596337872448 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67680870 chr16:67680869 nonsynonymous SNV 0.877 0 20 hm7G_associated_SNPs_35025 0 0 0 0 2 CARMIL2 chr16:67680803 3'AG 67680803 Downstream 67bp 32227 chr16 67680869 67680869 1 + G A CESC 67680870 + 67680850 67680890 41 GGGAGACTTCAGCCACCTCGGCAGTCGGTGTGTGGCCTGCC GGGAGACTTCAGCCACCTCAGCAGTCGGTGTGTGGCCTGCC < 41bp 0.471109877581057 0.703298168936224 NA NA prediction 0.406596337872448 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67680870 chr16:67680869 nonsynonymous SNV 0.877 0 20 hm7G_associated_SNPs_35025 0 0 0 0 2 CARMIL2 chr16:67680876 5'GT 67680876 Upstream 8bp 32228 chr9 139310770 139310770 1 + C T UCEC 139310771 + 139310751 139310791 41 GTCGAGATGACGCGGATGGCGGTCCAGTTTGAGCTGGAGGA GTCGAGATGACGCGGATGGTGGTCCAGTTTGAGCTGGAGGA < 41bp 0.510809416237007 0.714106810040275 NA NA prediction 0.406594787606535 Functional Gain - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139310771 chr9:139310770 nonsynonymous SNV 0.781 2 20 hm7G_associated_SNPs_35027 0 0 1 1 2 PMPCA chr9:139310743 3'AG 139310743 Downstream 28bp 32229 chr9 139310770 139310770 1 + C T UCEC 139310771 + 139310751 139310791 41 GTCGAGATGACGCGGATGGCGGTCCAGTTTGAGCTGGAGGA GTCGAGATGACGCGGATGGTGGTCCAGTTTGAGCTGGAGGA < 41bp 0.510809416237007 0.714106810040275 NA NA prediction 0.406594787606535 Functional Gain - PMPCA ENSG00000165688 CDS Human protein_coding chr9:139310771 chr9:139310770 nonsynonymous SNV 0.781 2 20 hm7G_associated_SNPs_35027 0 0 1 1 2 PMPCA chr9:139310843 5'GT 139310843 Upstream 74bp 32230 chr2 24980937 24980937 1 + C T GBM 24980938 + 24980918 24980958 41 TCCATGGCAGGTGGAAATACGAATGTTCAGAACATGAACCC TCCATGGCAGGTGGAAATATGAATGTTCAGAACATGAACCC < 41bp 0.528889786902974 0.732182316337516 NA NA prediction 0.406585058869083 Functional Gain - NCOA1 ENSG00000084676 CDS Human protein_coding chr2:24980938 chr2:24980937 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_35029 0 0 0 0 1 NCOA1 chr2:24981025 5'GT 24981025 Upstream 89bp 32231 chr1 244803309 244803309 1 + C T UCEC 244803310 + 244803290 244803330 41 TCTTGTTTTGAGCTACTTTCGGTACATGAGGATTTATAGAC TCTTGTTTTGAGCTACTTTTGGTACATGAGGATTTATAGAC < 41bp 0.501620325328451 0.704912482990897 NA NA prediction 0.406584315324893 Functional Gain - CATSPERE ENSG00000179397 CDS Human protein_coding chr1:244803310 chr1:244803309 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35030 0 0 0 4 1 CATSPERE chr1:244803230 3'AG 244803230 Downstream 80bp 32232 chr12 49943396 49943396 1 + G A COAD 49943397 + 49943377 49943417 41 ACTTCCAGGCCACCTGGGCGGTGAACAATGGCATCGACACC ACTTCCAGGCCACCTGGGCAGTGAACAATGGCATCGACACC < 41bp 0.537617183575775 0.7409087604502 NA NA prediction 0.406583153748849 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49943397 chr12:49943396 synonymous SNV . 0 20 hm7G_associated_SNPs_35031 0 0 0 0 1 KCNH3 chr12:49943423 5'GT 49943423 Upstream 28bp 32233 chr3 13677982 13677982 1 + C T COAD 13677983 + 13677963 13678003 41 TGGGTACCCACAACTGTTCCGAGGCTGAGACCTGCCACAAC TGGGTACCCACAACTGTTCTGAGGCTGAGACCTGCCACAAC < 41bp 0.53965443552736 0.742945701894258 NA NA prediction 0.406582532733795 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13677983 chr3:13677982 synonymous SNV . 0 20 hm7G_associated_SNPs_35033 0 0 0 0 2 FBLN2 chr3:13677945 3'AG 13677945 Downstream 38bp 32234 chr3 13677982 13677982 1 + C T COAD 13677983 + 13677963 13678003 41 TGGGTACCCACAACTGTTCCGAGGCTGAGACCTGCCACAAC TGGGTACCCACAACTGTTCTGAGGCTGAGACCTGCCACAAC < 41bp 0.53965443552736 0.742945701894258 NA NA prediction 0.406582532733795 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13677983 chr3:13677982 synonymous SNV . 0 20 hm7G_associated_SNPs_35033 0 0 0 0 2 FBLN2 chr3:13678068 5'GT 13678068 Upstream 87bp 32235 chr6 43227378 43227378 1 + G A SKCM 43227379 + 43227359 43227399 41 CGTTCTCTGCGCTACCGGAGGGTGAACAGCCCTGAGTCAGA CGTTCTCTGCGCTACCGGAAGGTGAACAGCCCTGAGTCAGA < 41bp 0.478010649390746 0.703289092693093 NA NA prediction 0.406578185386186 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43227379 chr6:43227378 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35034 0 0 0 0 1 TTBK1 chr6:43227444 5'GT 43227444 Upstream 67bp 32236 chr12 4440467 4440467 1 + G T UCEC 4440468 + 4440448 4440488 41 GAGAAACAAGATTTAACAAGGAGAAAATAATCCAAGGTTGG GAGAAACAAGATTTAACAATGAGAAAATAATCCAAGGTTGG < 41bp 0.382345441643464 0.703281916513396 NA NA prediction 0.406563833026792 Functional Gain - TIGAR ENSG00000078237 CDS Human protein_coding chr12:4440468 chr12:4440467 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35038 0 0 1 0 2 TIGAR chr12:4440446 3'AG 4440446 Downstream 22bp 32237 chr12 4440467 4440467 1 + G T UCEC 4440468 + 4440448 4440488 41 GAGAAACAAGATTTAACAAGGAGAAAATAATCCAAGGTTGG GAGAAACAAGATTTAACAATGAGAAAATAATCCAAGGTTGG < 41bp 0.382345441643464 0.703281916513396 NA NA prediction 0.406563833026792 Functional Gain - TIGAR ENSG00000078237 CDS Human protein_coding chr12:4440468 chr12:4440467 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35038 0 0 1 0 2 TIGAR chr12:4440483 5'GT 4440483 Upstream 17bp 32238 chr19 38682946 38682946 1 + C T rs150063338 38682947 + 38682927 38682967 41 CCAGAGCAGGAGAGAGACACGGGAGTACGTAGGGCCCTGTC CCAGAGCAGGAGAGAGACATGGGAGTACGTAGGGCCCTGTC < 41bp 0.500257804179812 0.70353895961166 NA NA prediction 0.406562310863696 Functional Gain - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38682947 chr19:38682946 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_35039 0 0 1 0 1 SIPA1L3 chr19:38682950 5'GT 38682950 Upstream 5bp 32239 chr10 71266675 71266675 1 + G A rs74139176 71266676 + 71266656 71266696 41 TGATGGGCTCCTGGGGCCCGGTGCCAAGCCCAGCGTGGAGG TGATGGGCTCCTGGGGCCCAGTGCCAAGCCCAGCGTGGAGG < 41bp 0.547929945553527 0.751207817480999 NA NA prediction 0.406555743854943 Functional Gain - TSPAN15 ENSG00000099282 CDS Human protein_coding chr10:71266676 chr10:71266675 nonsynonymous SNV 0.028 0 20 hm7G_associated_SNPs_35041 0 0 1 0 1 TSPAN15 chr10:71266585 3'AG 71266585 Downstream 91bp 32240 chr7 101063350 101063350 1 + G A GBM 101063351 + 101063331 101063371 41 CGCGTGTACCAGAGCTGCCGGTGGCCGGGGCCCTGCGCCAA CGCGTGTACCAGAGCTGCCAGTGGCCGGGGCCCTGCGCCAA < 41bp 0.557891625911831 0.76116937692608 NA NA prediction 0.406555502028498 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101063351 chr7:101063350 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_35043 0 0 0 0 2 COL26A1 chr7:101063258 3'AG 101063258 Downstream 93bp 32241 chr7 101063350 101063350 1 + G A GBM 101063351 + 101063331 101063371 41 CGCGTGTACCAGAGCTGCCGGTGGCCGGGGCCCTGCGCCAA CGCGTGTACCAGAGCTGCCAGTGGCCGGGGCCCTGCGCCAA < 41bp 0.557891625911831 0.76116937692608 NA NA prediction 0.406555502028498 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101063351 chr7:101063350 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_35043 0 0 0 0 2 COL26A1 chr7:101063380 5'GT 101063380 Upstream 31bp 32242 chr6 88372813 88372813 1 + C T STAD 88372814 + 88372794 88372834 41 GAGCATTTAAATGCTGCTCCGCGAATTGCCCTCCATACTGC GAGCATTTAAATGCTGCTCTGCGAATTGCCCTCCATACTGC < 41bp 0.493249168957524 0.703275919109987 NA NA prediction 0.406551838219975 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88372814 chr6:88372813 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_35045 0 0 1 0 1 ORC3 chr6:88372721 3'AG 88372721 Downstream 93bp 32243 chr11 73106282 73106282 1 + C T rs201749248 73106283 + 73106263 73106303 41 AGGCCCTGCTAGGAAGTGGCGGAAGCCGTACAAAGTGGCTG AGGCCCTGCTAGGAAGTGGTGGAAGCCGTACAAAGTGGCTG < 41bp 0.525122194609401 0.728397828415034 NA NA prediction 0.406551267611266 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73106283 chr11:73106282 synonymous SNV . 0 20 hm7G_associated_SNPs_35046 0 0 0 0 1 RELT chr11:73106330 5'GT 73106330 Upstream 49bp 32244 chr19 39989875 39989875 1 + G T LUSC 39989876 + 39989856 39989896 41 CTGCAGATCCACTCTTTCGGGCCGGGTCCAGGCCCTGGGGC CTGCAGATCCACTCTTTCGTGCCGGGTCCAGGCCCTGGGGC < 41bp 0.349877385759269 0.703273693280203 NA NA prediction 0.406547386560405 Functional Gain - DLL3 ENSG00000090932 CDS Human protein_coding chr19:39989876 chr19:39989875 nonsynonymous SNV 0.049 3 20 hm7G_associated_SNPs_35048 0 0 1 0 1 DLL3 chr19:39989832 3'AG 39989832 Downstream 44bp 32245 chr19 54932519 54932519 1 + C T KIRP 54932520 + 54932500 54932540 41 GTGTCCCAGCTCAGCTCTGCGCTGCTGCACGCCAACCACAC GTGTCCCAGCTCAGCTCTGTGCTGCTGCACGCCAACCACAC < 41bp 0.546071210487386 0.749343539875248 NA NA prediction 0.406544658775725 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54932520 chr19:54932519 nonsynonymous SNV 0.598 4 20 hm7G_associated_SNPs_35050 0 0 0 0 2 TTYH1 chr19:54932451 3'AG 54932451 Downstream 69bp 32246 chr19 54932519 54932519 1 + C T KIRP 54932520 + 54932500 54932540 41 GTGTCCCAGCTCAGCTCTGCGCTGCTGCACGCCAACCACAC GTGTCCCAGCTCAGCTCTGTGCTGCTGCACGCCAACCACAC < 41bp 0.546071210487386 0.749343539875248 NA NA prediction 0.406544658775725 Functional Gain - TTYH1 ENSG00000167614 CDS Human protein_coding chr19:54932520 chr19:54932519 nonsynonymous SNV 0.598 4 20 hm7G_associated_SNPs_35050 0 0 0 0 2 TTYH1 chr19:54932562 5'GT 54932562 Upstream 44bp 32247 chr4 156725796 156725796 1 + C T UCEC 156725797 + 156725777 156725817 41 TACAGGTGTCATAGGACAGCGGATGCCTCGATACTGTCTTT TACAGGTGTCATAGGACAGTGGATGCCTCGATACTGTCTTT < 41bp 0.528607059919511 0.731878230927814 NA NA prediction 0.406542342016608 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156725797 chr4:156725796 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_35051 0 0 0 0 1 GUCY1B3 chr4:156725745 3'AG 156725745 Downstream 52bp 32248 chr19 14020732 14020732 1 + G A PRAD 14020733 + 14020713 14020753 41 TGAGTTCTTGGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGG TGAGTTCTTGGCTTTGGTCAGGGGCCAGCCCCCAGCCCTGG < 41bp 0.541869305399336 0.745140352563459 NA NA prediction 0.406542094328247 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020733 chr19:14020732 nonsynonymous SNV 0.932 3 20 hm7G_associated_SNPs_35052 0 0 1 0 2 CC2D1A chr19:14020636 3'AG 14020636 Downstream 97bp 32249 chr19 14020732 14020732 1 + G A PRAD 14020733 + 14020713 14020753 41 TGAGTTCTTGGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGG TGAGTTCTTGGCTTTGGTCAGGGGCCAGCCCCCAGCCCTGG < 41bp 0.541869305399336 0.745140352563459 NA NA prediction 0.406542094328247 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14020733 chr19:14020732 nonsynonymous SNV 0.932 3 20 hm7G_associated_SNPs_35052 0 0 1 0 2 CC2D1A chr19:14020771 5'GT 14020771 Upstream 40bp 32250 chr13 114150308 114150308 1 + C T COAD 114150309 + 114150289 114150329 41 GAAGGAGAGCAGCCGGCAGCGCCTGGAGGCCCTGAGAGAGG GAAGGAGAGCAGCCGGCAGTGCCTGGAGGCCCTGAGAGAGG < 41bp 0.522279626233522 0.725549981183588 NA NA prediction 0.406540709900132 Functional Gain - TMCO3 ENSG00000150403 CDS Human protein_coding chr13:114150309 chr13:114150308 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_35053 0 0 1 0 1 TMCO3 chr13:114150340 5'GT 114150340 Upstream 33bp 32251 chr10 72468418 72468418 1 + C T STAD 72468419 + 72468399 72468439 41 CGACACAGAGCGGAAGCGGCGGCATGCCAAGCCAGGCAGCT CGACACAGAGCGGAAGCGGTGGCATGCCAAGCCAGGCAGCT < 41bp 0.549733251236641 0.752997393119506 NA NA prediction 0.406528283765732 Functional Gain - ADAMTS14 ENSG00000138316 CDS Human protein_coding chr10:72468419 chr10:72468418 nonsynonymous SNV 0.954 4 20 hm7G_associated_SNPs_35057 0 0 1 0 1 ADAMTS14 chr10:72468344 3'AG 72468344 Downstream 75bp 32252 chr22 26086188 26086188 1 + C T STAD 26086189 + 26086169 26086209 41 TCTTGGATGAACATGGACACGCAAGAATATCAGATCTTGGT TCTTGGATGAACATGGACATGCAAGAATATCAGATCTTGGT < 41bp 0.532043184473474 0.73530403334404 NA NA prediction 0.406521697741132 Functional Gain - GRK3 ENSG00000100077 CDS Human protein_coding chr22:26086189 chr22:26086188 synonymous SNV . 0 20 hm7G_associated_SNPs_35060 0 0 1 0 2 GRK3 chr22:26086156 3'AG 26086156 Downstream 33bp 32253 chr22 26086188 26086188 1 + C T STAD 26086189 + 26086169 26086209 41 TCTTGGATGAACATGGACACGCAAGAATATCAGATCTTGGT TCTTGGATGAACATGGACATGCAAGAATATCAGATCTTGGT < 41bp 0.532043184473474 0.73530403334404 NA NA prediction 0.406521697741132 Functional Gain - GRK3 ENSG00000100077 CDS Human protein_coding chr22:26086189 chr22:26086188 synonymous SNV . 0 20 hm7G_associated_SNPs_35060 0 0 1 0 2 GRK3 chr22:26086250 5'GT 26086250 Upstream 63bp 32254 chr8 132991256 132991256 1 + C T SKCM 132991257 + 132991237 132991277 41 TGACAATAGGGCAAAGCTTCGAGGGATCAGGTAATGTGCCA TGACAATAGGGCAAAGCTTTGAGGGATCAGGTAATGTGCCA < 41bp 0.515681890560578 0.718942276620825 NA NA prediction 0.406520772120493 Functional Gain - EFR3A ENSG00000132294 CDS Human protein_coding chr8:132991257 chr8:132991256 stopgain 0.986 1 20 hm7G_associated_SNPs_35061 0 0 1 0 1 EFR3A chr8:132991266 5'GT 132991266 Upstream 11bp 32255 chr17 80865658 80865658 1 + C T COAD 80865659 + 80865639 80865679 41 CCGTCACGGACCATCTGGACGAGCAGGCAGTGCAGGGCCTG CCGTCACGGACCATCTGGATGAGCAGGCAGTGCAGGGCCTG < 41bp 0.540693511772316 0.743953312780831 NA NA prediction 0.40651960201703 Functional Gain - TBCD ENSG00000141556 CDS Human protein_coding chr17:80865659 chr17:80865658 synonymous SNV . 0 20 hm7G_associated_SNPs_35062 0 0 1 0 2 TBCD chr17:80865637 3'AG 80865637 Downstream 22bp 32256 chr17 80865658 80865658 1 + C T COAD 80865659 + 80865639 80865679 41 CCGTCACGGACCATCTGGACGAGCAGGCAGTGCAGGGCCTG CCGTCACGGACCATCTGGATGAGCAGGCAGTGCAGGGCCTG < 41bp 0.540693511772316 0.743953312780831 NA NA prediction 0.40651960201703 Functional Gain - TBCD ENSG00000141556 CDS Human protein_coding chr17:80865659 chr17:80865658 synonymous SNV . 0 20 hm7G_associated_SNPs_35062 0 0 1 0 2 TBCD chr17:80865697 5'GT 80865697 Upstream 40bp 32257 chr4 52943183 52943183 1 + C T UCEC 52943184 + 52943164 52943204 41 CAAGGCTGAGACCGTTCAGCGGATCATCTACATCGCCACAG CAAGGCTGAGACCGTTCAGTGGATCATCTACATCGCCACAG < 41bp 0.485068038529892 0.703256365386989 NA NA prediction 0.406512730773978 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52943184 chr4:52943183 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_35064 0 0 1 0 1 SPATA18 chr4:52943206 5'GT 52943206 Upstream 24bp 32258 chr17 7317998 7317998 1 + G A UCEC 7317999 + 7317979 7318019 41 CAGGTTTTCTCAGCACCGGGGACCAGGCTGCAAAAGGCAAC CAGGTTTTCTCAGCACCGGAGACCAGGCTGCAAAAGGCAAC < 41bp 0.53611469135677 0.739370066488563 NA NA prediction 0.406510750263585 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7317999 chr17:7317998 synonymous SNV . 0 20 hm7G_associated_SNPs_35065 0 0 1 0 1 NLGN2 chr17:7317982 3'AG 7317982 Downstream 17bp 32259 chr12 57864192 57864192 1 + C T PRAD 57864193 + 57864173 57864213 41 CTCTGCCTATACTGTCAGCCGCCGCTCCTCCCTGGCCTCTC CTCTGCCTATACTGTCAGCTGCCGCTCCTCCCTGGCCTCTC < 41bp 0.513489686681103 0.71674456439541 NA NA prediction 0.406509755428613 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57864193 chr12:57864192 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_35067 0 0 0 0 1 GLI1 chr12:57864100 3'AG 57864100 Downstream 93bp 32260 chr3 178937461 178937461 1 + C T UCEC 178937462 + 178937442 178937482 41 GGTTCGAGGTTTTGCTGTTCGGTGCTTGGAAAAATATTTAA GGTTCGAGGTTTTGCTGTTTGGTGCTTGGAAAAATATTTAA < 41bp 0.513200382481335 0.716453745708065 NA NA prediction 0.406506726453459 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178937462 chr3:178937461 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_35068 0 0 1 0 1 PIK3CA chr3:178937523 5'GT 178937523 Upstream 63bp 32261 chr11 65304124 65304124 1 + C T rs56296579 65304125 + 65304105 65304145 41 CTAGCTGGGCAGGCTGGGCCGTGACCGGGGTCTCCTCACTC CTAGCTGGGCAGGCTGGGCTGTGACCGGGGTCTCCTCACTC < 41bp 0.509195000862838 0.712446835609166 NA NA prediction 0.406503669492655 Functional Gain - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65304125 chr11:65304124 synonymous SNV . 0 20 hm7G_associated_SNPs_35069 0 0 1 0 2 SCYL1 chr11:65304057 3'AG 65304057 Downstream 68bp 32262 chr11 65304124 65304124 1 + C T rs56296579 65304125 + 65304105 65304145 41 CTAGCTGGGCAGGCTGGGCCGTGACCGGGGTCTCCTCACTC CTAGCTGGGCAGGCTGGGCTGTGACCGGGGTCTCCTCACTC < 41bp 0.509195000862838 0.712446835609166 NA NA prediction 0.406503669492655 Functional Gain - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65304125 chr11:65304124 synonymous SNV . 0 20 hm7G_associated_SNPs_35069 0 0 1 0 2 SCYL1 chr11:65304221 5'GT 65304221 Upstream 98bp 32263 chr7 130138042 130138042 1 + G A SKCM 130138043 + 130138023 130138063 41 AAGCGCTTTTGCGGCATCTGGGGCTCCAGAACCGCAGGATC AAGCGCTTTTGCGGCATCTAGGGCTCCAGAACCGCAGGATC < 41bp 0.488022596483246 0.703249767253842 NA NA prediction 0.406499534507683 Functional Gain - MEST ENSG00000106484 CDS Human protein_coding chr7:130138043 chr7:130138042 synonymous SNV . 0 20 hm7G_associated_SNPs_35071 0 0 1 0 2 MEST chr7:130137980 3'AG 130137980 Downstream 63bp 32264 chr7 130138042 130138042 1 + G A SKCM 130138043 + 130138023 130138063 41 AAGCGCTTTTGCGGCATCTGGGGCTCCAGAACCGCAGGATC AAGCGCTTTTGCGGCATCTAGGGCTCCAGAACCGCAGGATC < 41bp 0.488022596483246 0.703249767253842 NA NA prediction 0.406499534507683 Functional Gain - MEST ENSG00000106484 CDS Human protein_coding chr7:130138043 chr7:130138042 synonymous SNV . 0 20 hm7G_associated_SNPs_35071 0 0 1 0 2 MEST chr7:130138116 5'GT 130138116 Upstream 75bp 32265 chr19 38845375 38845375 1 + C T ACC 38845376 + 38845356 38845396 41 GGATTCGTGTCCTGGCCAGCGAGTGCATCAAGAAGCTGTGC GGATTCGTGTCCTGGCCAGTGAGTGCATCAAGAAGCTGTGC < 41bp 0.520618768278421 0.723868528936044 NA NA prediction 0.406499521315246 Functional Gain - CATSPERG ENSG00000099338 CDS Human protein_coding chr19:38845376 chr19:38845375 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_35072 0 0 0 0 1 CATSPERG chr19:38845350 3'AG 38845350 Downstream 26bp 32266 chr1 21798191 21798191 1 + G A rs72872294 21798192 + 21798172 21798212 41 TCCTCACTCCGGATGAGCCGGACAACTCCCAGGGACGGGAC TCCTCACTCCGGATGAGCCAGACAACTCCCAGGGACGGGAC < 41bp 0.527682019127111 0.730930783856927 NA NA prediction 0.406497529459632 Functional Gain - NBPF3 ENSG00000142794 CDS Human protein_coding chr1:21798192 chr1:21798191 synonymous SNV . 0 20 hm7G_associated_SNPs_35074 0 0 1 0 1 NBPF3 chr1:21798276 5'GT 21798276 Upstream 86bp 32267 chr19 37117040 37117040 1 + G T LIHC 37117041 + 37117021 37117061 41 TTCTTTTCTAGAAGAAGATGGGAAAACTGAAGATGTCTTAG TTCTTTTCTAGAAGAAGATTGGAAAACTGAAGATGTCTTAG < 41bp 0.689233609812495 0.892480796474956 NA NA prediction 0.406494373324922 Functional Gain - ZNF382 ENSG00000161298 CDS Human protein_coding chr19:37117041 chr19:37117040 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_35075 0 0 0 0 2 ZNF382 chr19:37117032 3'AG 37117032 Downstream 9bp 32268 chr19 37117040 37117040 1 + G T LIHC 37117041 + 37117021 37117061 41 TTCTTTTCTAGAAGAAGATGGGAAAACTGAAGATGTCTTAG TTCTTTTCTAGAAGAAGATTGGAAAACTGAAGATGTCTTAG < 41bp 0.689233609812495 0.892480796474956 NA NA prediction 0.406494373324922 Functional Gain - ZNF382 ENSG00000161298 CDS Human protein_coding chr19:37117041 chr19:37117040 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_35075 0 0 0 0 2 ZNF382 chr19:37117035 3'AG 37117035 Downstream 6bp 32269 chr16 67682005 67682005 1 + C T BRCA 67682006 + 67681986 67682026 41 TACTGTCGTTCCTGAATCTCGCAGGCACCGACACTGCCCTG TACTGTCGTTCCTGAATCTTGCAGGCACCGACACTGCCCTG < 41bp 0.527734001154428 0.730980053491125 NA NA prediction 0.406492104673394 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67682006 chr16:67682005 synonymous SNV . 0 20 hm7G_associated_SNPs_35077 0 0 0 0 2 CARMIL2 chr16:67681955 3'AG 67681955 Downstream 51bp 32270 chr16 67682005 67682005 1 + C T BRCA 67682006 + 67681986 67682026 41 TACTGTCGTTCCTGAATCTCGCAGGCACCGACACTGCCCTG TACTGTCGTTCCTGAATCTTGCAGGCACCGACACTGCCCTG < 41bp 0.527734001154428 0.730980053491125 NA NA prediction 0.406492104673394 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67682006 chr16:67682005 synonymous SNV . 0 20 hm7G_associated_SNPs_35077 0 0 0 0 2 CARMIL2 chr16:67682032 5'GT 67682032 Upstream 28bp 32271 chr6 26598303 26598303 1 + C T BLCA 26598304 + 26598284 26598324 41 GCCTATGGGTGCCCGCAGGCGCAGCCCCTTCCGTTATGATC GCCTATGGGTGCCCGCAGGTGCAGCCCCTTCCGTTATGATC < 41bp 0.493701322175661 0.703244570929848 NA NA prediction 0.406489141859696 Functional Gain - ABT1 ENSG00000146109 CDS Human protein_coding chr6:26598304 chr6:26598303 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35079 0 0 1 0 1 ABT1 chr6:26598338 5'GT 26598338 Upstream 36bp 32272 chr7 142562456 142562456 1 + C T rs561585141 142562457 + 142562437 142562477 41 GGTAGCTGTCGGGGGCTGCCGCTGCCAGCCTGGATACCAAC GGTAGCTGTCGGGGGCTGCTGCTGCCAGCCTGGATACCAAC < 41bp 0.532555739417258 0.735798241153436 NA NA prediction 0.406485003472356 Functional Gain - EPHB6 ENSG00000106123 CDS Human protein_coding chr7:142562457 chr7:142562456 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_35080 0 0 0 0 1 EPHB6 chr7:142562504 5'GT 142562504 Upstream 49bp 32273 chr1 46488982 46488982 1 + C T OV 46488983 + 46488963 46489003 41 TTAAGCTCATCAGCAATGGCGCCTATGGGTAAAGGCAGGGG TTAAGCTCATCAGCAATGGTGCCTATGGGTAAAGGCAGGGG < 41bp 0.517204180461253 0.720445370288942 NA NA prediction 0.40648237965538 Functional Gain - MAST2 ENSG00000086015 CDS Human protein_coding chr1:46488983 chr1:46488982 synonymous SNV . 0 20 hm7G_associated_SNPs_35082 0 0 1 0 2 MAST2 chr1:46488905 3'AG 46488905 Downstream 78bp 32274 chr1 46488982 46488982 1 + C T OV 46488983 + 46488963 46489003 41 TTAAGCTCATCAGCAATGGCGCCTATGGGTAAAGGCAGGGG TTAAGCTCATCAGCAATGGTGCCTATGGGTAAAGGCAGGGG < 41bp 0.517204180461253 0.720445370288942 NA NA prediction 0.40648237965538 Functional Gain - MAST2 ENSG00000086015 CDS Human protein_coding chr1:46488983 chr1:46488982 synonymous SNV . 0 20 hm7G_associated_SNPs_35082 0 0 1 0 2 MAST2 chr1:46488990 5'GT 46488990 Upstream 9bp 32275 chr22 24224736 24224736 1 + G A rs192473607 24224737 + 24224717 24224757 41 TGCCAGGGCTGCCGTGCCCGGCGCCCATGGGAGCTGTTCCA TGCCAGGGCTGCCGTGCCCAGCGCCCATGGGAGCTGTTCCA < 41bp 0.489937234258152 0.703240672931831 NA NA prediction 0.406481345863662 Functional Gain - SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24224737 chr22:24224736 nonsynonymous SNV 0.045 0 20 hm7G_associated_SNPs_35084 0 0 1 0 2 SLC2A11 chr22:24224646 3'AG 24224646 Downstream 91bp 32276 chr22 24224736 24224736 1 + G A rs192473607 24224737 + 24224717 24224757 41 TGCCAGGGCTGCCGTGCCCGGCGCCCATGGGAGCTGTTCCA TGCCAGGGCTGCCGTGCCCAGCGCCCATGGGAGCTGTTCCA < 41bp 0.489937234258152 0.703240672931831 NA NA prediction 0.406481345863662 Functional Gain - SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24224737 chr22:24224736 nonsynonymous SNV 0.045 0 20 hm7G_associated_SNPs_35084 0 0 1 0 2 SLC2A11 chr22:24224833 5'GT 24224833 Upstream 98bp 32277 chr2 219297618 219297618 1 + G A SKCM 219297619 + 219297599 219297639 41 CCAGATCCGGGTCCCAATGGGCAAGGAGCCACCTCATCTTA CCAGATCCGGGTCCCAATGAGCAAGGAGCCACCTCATCTTA < 41bp 0.550328206255617 0.753568415550574 NA NA prediction 0.406480418589914 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219297619 chr2:219297618 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35085 0 0 1 0 1 VIL1 chr2:219297674 5'GT 219297674 Upstream 57bp 32278 chr19 38853200 38853200 1 + C T STAD 38853201 + 38853181 38853221 41 CAGGGCCACTCGTTCCGGACGCAGTCAGAACTCGGTCTGCG CAGGGCCACTCGTTCCGGATGCAGTCAGAACTCGGTCTGCG < 41bp 0.515631707920456 0.71886970860208 NA NA prediction 0.406476001363248 Functional Gain - CATSPERG ENSG00000099338 CDS Human protein_coding chr19:38853201 chr19:38853200 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_35087 0 0 0 0 1 CATSPERG chr19:38853214 5'GT 38853214 Upstream 15bp 32279 chr9 96435876 96435876 1 + G A rs140677384 96435877 + 96435857 96435897 41 GTGCCCCTAGCCAGCCCCCGGCCTCCCCCAGCACACAGGAA GTGCCCCTAGCCAGCCCCCAGCCTCCCCCAGCACACAGGAA < 41bp 0.476537697848591 0.703236972793068 NA NA prediction 0.406473945586136 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96435877 chr9:96435876 synonymous SNV . 0 20 hm7G_associated_SNPs_35088 0 0 1 0 1 PHF2 chr9:96435867 3'AG 96435867 Downstream 10bp 32280 chr8 145615883 145615883 1 + C T UCEC 145615884 + 145615864 145615904 41 CCCGCAGGTCTCTGAAGGTCGGCCTGCAGATCTCCCTGGAC CCCGCAGGTCTCTGAAGGTTGGCCTGCAGATCTCCCTGGAC < 41bp 0.497305789697899 0.703236737087363 NA NA prediction 0.406473474174725 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145615884 chr8:145615883 synonymous SNV . 0 20 hm7G_associated_SNPs_35089 0 0 1 0 2 ADCK5 chr8:145615871 3'AG 145615871 Downstream 13bp 32281 chr8 145615883 145615883 1 + C T UCEC 145615884 + 145615864 145615904 41 CCCGCAGGTCTCTGAAGGTCGGCCTGCAGATCTCCCTGGAC CCCGCAGGTCTCTGAAGGTTGGCCTGCAGATCTCCCTGGAC < 41bp 0.497305789697899 0.703236737087363 NA NA prediction 0.406473474174725 Functional Gain - ADCK5 ENSG00000173137 CDS Human protein_coding chr8:145615884 chr8:145615883 synonymous SNV . 0 20 hm7G_associated_SNPs_35089 0 0 1 0 2 ADCK5 chr8:145615946 5'GT 145615946 Upstream 64bp 32282 chr2 11775428 11775428 1 + G A COAD 11775429 + 11775409 11775449 41 GATGTAGACTTCAACCTGCGGGTGCACAGCGCCGGCCTCCT GATGTAGACTTCAACCTGCAGGTGCACAGCGCCGGCCTCCT < 41bp 0.511759792969848 0.714994037761118 NA NA prediction 0.40646848958254 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11775429 chr2:11775428 nonsynonymous SNV 0.975 4 20 hm7G_associated_SNPs_35091 0 0 0 0 1 GREB1 chr2:11775396 3'AG 11775396 Downstream 33bp 32283 chr15 67004041 67004041 1 + C T STAD 67004042 + 67004022 67004062 41 CTACTCTCGGCTGTCTCCTCGCGACGAGTACAAGCCACTGG CTACTCTCGGCTGTCTCCTTGCGACGAGTACAAGCCACTGG < 41bp 0.517165272346865 0.72039910940682 NA NA prediction 0.406467674119909 Functional Gain - SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67004042 chr15:67004041 nonsynonymous SNV 0.904 1 20 hm7G_associated_SNPs_35092 0 0 1 0 2 SMAD6 chr15:67004006 3'AG 67004006 Downstream 36bp 32284 chr15 67004041 67004041 1 + C T STAD 67004042 + 67004022 67004062 41 CTACTCTCGGCTGTCTCCTCGCGACGAGTACAAGCCACTGG CTACTCTCGGCTGTCTCCTTGCGACGAGTACAAGCCACTGG < 41bp 0.517165272346865 0.72039910940682 NA NA prediction 0.406467674119909 Functional Gain - SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67004042 chr15:67004041 nonsynonymous SNV 0.904 1 20 hm7G_associated_SNPs_35092 0 0 1 0 2 SMAD6 chr15:67004062 5'GT 67004062 Upstream 22bp 32285 chr18 77798535 77798535 1 + C T PAAD 77798536 + 77798516 77798556 41 TCCAGACTTCTCAGCCTGCCGAGCGTACTGGAAGACAACGC TCCAGACTTCTCAGCCTGCTGAGCGTACTGGAAGACAACGC < 41bp 0.54349861077615 0.746731975111271 NA NA prediction 0.406466728670243 Functional Gain - RBFA ENSG00000101546 CDS Human protein_coding chr18:77798536 chr18:77798535 stopgain 0.993 1 20 hm7G_associated_SNPs_35093 0 0 1 0 2 RBFA chr18:77798505 3'AG 77798505 Downstream 31bp 32286 chr18 77798535 77798535 1 + C T PAAD 77798536 + 77798516 77798556 41 TCCAGACTTCTCAGCCTGCCGAGCGTACTGGAAGACAACGC TCCAGACTTCTCAGCCTGCTGAGCGTACTGGAAGACAACGC < 41bp 0.54349861077615 0.746731975111271 NA NA prediction 0.406466728670243 Functional Gain - RBFA ENSG00000101546 CDS Human protein_coding chr18:77798536 chr18:77798535 stopgain 0.993 1 20 hm7G_associated_SNPs_35093 0 0 1 0 2 RBFA chr18:77798617 5'GT 77798617 Upstream 83bp 32287 chr9 80851430 80851430 1 + G T LUAD 80851431 + 80851411 80851451 41 CGCCTCCGCGGGGTGGACTGGGCGCCTCTGCTGAGCACCCT CGCCTCCGCGGGGTGGACTTGGCGCCTCTGCTGAGCACCCT < 41bp 0.650280822040048 0.853513865434285 NA NA prediction 0.406466086788474 Functional Gain - CEP78 ENSG00000148019 CDS Human protein_coding chr9:80851431 chr9:80851430 nonsynonymous SNV 0.924 4 20 hm7G_associated_SNPs_35094 0 0 1 0 1 CEP78 chr9:80851519 5'GT 80851519 Upstream 90bp 32288 chr18 8819197 8819197 1 + C T UCEC 8819198 + 8819178 8819218 41 ATGCCTTGTCCCTGGATGACGAGCCAGAAGAGCCACCAGCC ATGCCTTGTCCCTGGATGATGAGCCAGAAGAGCCACCAGCC < 41bp 0.543026135734867 0.746258739194028 NA NA prediction 0.406465206918323 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8819198 chr18:8819197 synonymous SNV . 0 20 hm7G_associated_SNPs_35096 0 0 0 0 1 MTCL1 chr18:8819257 5'GT 8819257 Upstream 61bp 32289 chr15 89698701 89698701 1 + C T rs111436651 89698702 + 89698682 89698722 41 AAAATGGCTATCGGTGCGCCGTGCTGAACCACCTGGGTGCC AAAATGGCTATCGGTGCGCTGTGCTGAACCACCTGGGTGCC < 41bp 0.522971289653132 0.726202617556427 NA NA prediction 0.406462655806591 Functional Gain - ABHD2 ENSG00000140526 CDS Human protein_coding chr15:89698702 chr15:89698701 synonymous SNV . 0 20 hm7G_associated_SNPs_35097 0 0 1 0 1 ABHD2 chr15:89698765 5'GT 89698765 Upstream 65bp 32290 chr11 66235713 66235713 1 + C T UCEC 66235714 + 66235694 66235734 41 GTGAAGATGCGCAGCCAGGCGAGGAGCCCATCAAGTATGGT GTGAAGATGCGCAGCCAGGTGAGGAGCCCATCAAGTATGGT < 41bp 0.530193762622147 0.733423025879605 NA NA prediction 0.406458526514917 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66235714 chr11:66235713 synonymous SNV . 0 20 hm7G_associated_SNPs_35099 0 0 0 0 1 PELI3 chr11:66235751 5'GT 66235751 Upstream 39bp 32291 chr10 101122031 101122031 1 + C T UCEC 101122032 + 101122012 101122052 41 TTCGGAGAAGATCCTGCTCCGGCTCCTGAAACATCCCAACG TTCGGAGAAGATCCTGCTCTGGCTCCTGAAACATCCCAACG < 41bp 0.552938489276884 0.756167297332848 NA NA prediction 0.40645761611193 Functional Gain - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101122032 chr10:101122031 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_35100 0 0 1 0 1 CNNM1 chr10:101121984 3'AG 101121984 Downstream 48bp 32292 chr17 41926224 41926224 1 + C T LUAD 41926225 + 41926205 41926245 41 GGGTCGAAAAACGGGGCCCCGATGAGTCTTTACTGATCTCT GGGTCGAAAAACGGGGCCCTGATGAGTCTTTACTGATCTCT < 41bp 0.488712022477802 0.703228793088948 NA NA prediction 0.406457586177896 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41926225 chr17:41926224 synonymous SNV . 0 20 hm7G_associated_SNPs_35101 0 0 0 0 1 CD300LG chr17:41926261 5'GT 41926261 Upstream 38bp 32293 chr4 155487060 155487060 1 + G A UCEC 155487061 + 155487041 155487081 41 ATCAGTGGAGGTGGCTATCGGGCTCGTCCAGCCAAAGCAGC ATCAGTGGAGGTGGCTATCAGGCTCGTCCAGCCAAAGCAGC < 41bp 0.553568204557703 0.756794259183913 NA NA prediction 0.40645210925242 Functional Gain - FGB ENSG00000171564 CDS Human protein_coding chr4:155487061 chr4:155487060 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_35102 0 0 1 0 1 FGB chr4:155487151 5'GT 155487151 Upstream 92bp 32294 chr10 27450076 27450076 1 + C T UCEC 27450077 + 27450057 27450097 41 GAGGGTCATATTAAACTGACGGATTTTGGCCTTTCAAAAGT GAGGGTCATATTAAACTGATGGATTTTGGCCTTTCAAAAGT < 41bp 0.493299416115224 0.703225817292237 NA NA prediction 0.406451634584474 Functional Gain - MASTL ENSG00000120539 CDS Human protein_coding chr10:27450077 chr10:27450076 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_35103 1 0 1 2 2 MASTL chr10:27450023 3'AG 27450023 Downstream 54bp 32295 chr10 27450076 27450076 1 + C T UCEC 27450077 + 27450057 27450097 41 GAGGGTCATATTAAACTGACGGATTTTGGCCTTTCAAAAGT GAGGGTCATATTAAACTGATGGATTTTGGCCTTTCAAAAGT < 41bp 0.493299416115224 0.703225817292237 NA NA prediction 0.406451634584474 Functional Gain - MASTL ENSG00000120539 CDS Human protein_coding chr10:27450077 chr10:27450076 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_35103 1 0 1 2 2 MASTL chr10:27450111 5'GT 27450111 Upstream 36bp 32296 chr3 50289969 50289969 1 + C T rs112497464 50289970 + 50289950 50289990 41 TTTGCCGACCCCTCCAGAGCGGTATGTGCCCTCCGCCCCAC TTTGCCGACCCCTCCAGAGTGGTATGTGCCCTCCGCCCCAC < 41bp 0.510672550079349 0.713898189551388 NA NA prediction 0.406451278944078 Functional Gain - GNAI2 ENSG00000114353 CDS Human protein_coding chr3:50289970 chr3:50289969 nonsynonymous SNV 0.027 1 20 hm7G_associated_SNPs_35104 0 0 1 0 1 GNAI2 chr3:50289970 5'GT 50289970 Upstream 2bp 32297 chr14 94718121 94718121 1 + C T GBM 94718122 + 94718102 94718142 41 AAGTTACTGGAATAGACTTCGATTTTTGGATACCTGTGAAT AAGTTACTGGAATAGACTTTGATTTTTGGATACCTGTGAAT < 41bp 0.516743762581008 0.719968127567891 NA NA prediction 0.406448729973766 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94718122 chr14:94718121 stopgain 0.996 1 20 hm7G_associated_SNPs_35105 0 0 0 0 1 PPP4R4 chr14:94718086 3'AG 94718086 Downstream 36bp 32298 chr17 61557200 61557200 1 + C T rs4298 61557201 + 61557181 61557221 41 CCTGGGAGGGCTGGCACAACGCTGCGGGCATCCCGCTGAAA CCTGGGAGGGCTGGCACAATGCTGCGGGCATCCCGCTGAAA < 41bp 0.534179093221428 0.737398827920611 NA NA prediction 0.406439469398365 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61557201 chr17:61557200 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_35107 2 0 0 0 2 ACE chr17:61557130 3'AG 61557130 Downstream 71bp 32299 chr17 61557200 61557200 1 + C T rs4298 61557201 + 61557181 61557221 41 CCTGGGAGGGCTGGCACAACGCTGCGGGCATCCCGCTGAAA CCTGGGAGGGCTGGCACAATGCTGCGGGCATCCCGCTGAAA < 41bp 0.534179093221428 0.737398827920611 NA NA prediction 0.406439469398365 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61557201 chr17:61557200 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_35107 2 0 0 0 2 ACE chr17:61557273 5'GT 61557273 Upstream 74bp 32300 chr1 33134369 33134369 1 + C T UCEC 33134370 + 33134350 33134390 41 AGAGTGCAACCCAGACTTGCGTCTCCGTGGACATCAGAAGG AGAGTGCAACCCAGACTTGTGTCTCCGTGGACATCAGAAGG < 41bp 0.505009514427397 0.708226256967464 NA NA prediction 0.406433485080133 Functional Gain - RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33134370 chr1:33134369 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_35108 0 0 1 0 2 RBBP4 chr1:33134340 3'AG 33134340 Downstream 30bp 32301 chr1 33134369 33134369 1 + C T UCEC 33134370 + 33134350 33134390 41 AGAGTGCAACCCAGACTTGCGTCTCCGTGGACATCAGAAGG AGAGTGCAACCCAGACTTGTGTCTCCGTGGACATCAGAAGG < 41bp 0.505009514427397 0.708226256967464 NA NA prediction 0.406433485080133 Functional Gain - RBBP4 ENSG00000162521 CDS Human protein_coding chr1:33134370 chr1:33134369 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_35108 0 0 1 0 2 RBBP4 chr1:33134455 5'GT 33134455 Upstream 87bp 32302 chr20 2597814 2597814 1 + C T UCEC 2597815 + 2597795 2597835 41 GGGCGGTGATGAGCAGCAACGTACCCCATGAACGCGTGTTC GGGCGGTGATGAGCAGCAATGTACCCCATGAACGCGTGTTC < 41bp 0.504252888560185 0.70746701257449 NA NA prediction 0.406428248028609 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2597815 chr20:2597814 synonymous SNV . 0 20 hm7G_associated_SNPs_35109 0 0 0 0 1 TMC2 chr20:2597718 3'AG 2597718 Downstream 97bp 32303 chr2 27256968 27256968 1 + G A COAD 27256969 + 27256949 27256989 41 ACAAGCACCCTTTATGAGCGGGGCTTTGAGAATATCATGAA ACAAGCACCCTTTATGAGCAGGGCTTTGAGAATATCATGAA < 41bp 0.524700220702353 0.727913289995897 NA NA prediction 0.406426138587088 Functional Gain - TMEM214 ENSG00000119777 CDS Human protein_coding chr2:27256969 chr2:27256968 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_35110 0 0 1 1 1 TMEM214 chr2:27256935 3'AG 27256935 Downstream 34bp 32304 chr1 41218876 41218876 1 + C T BLCA 41218877 + 41218857 41218897 41 ATCAGTTTGATTTTCTCATCGATATTGTTCCAAGAGATGAA ATCAGTTTGATTTTCTCATTGATATTGTTCCAAGAGATGAA < 41bp 0.525474461752109 0.728683931330749 NA NA prediction 0.406418939157281 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41218877 chr1:41218876 synonymous SNV . 0 20 hm7G_associated_SNPs_35113 0 0 1 0 2 NFYC chr1:41218823 3'AG 41218823 Downstream 54bp 32305 chr1 41218876 41218876 1 + C T BLCA 41218877 + 41218857 41218897 41 ATCAGTTTGATTTTCTCATCGATATTGTTCCAAGAGATGAA ATCAGTTTGATTTTCTCATTGATATTGTTCCAAGAGATGAA < 41bp 0.525474461752109 0.728683931330749 NA NA prediction 0.406418939157281 Functional Gain - NFYC ENSG00000066136 CDS Human protein_coding chr1:41218877 chr1:41218876 synonymous SNV . 0 20 hm7G_associated_SNPs_35113 0 0 1 0 2 NFYC chr1:41218918 5'GT 41218918 Upstream 43bp 32306 chrX 107938583 107938583 1 + C T UCEC 107938584 + 107938564 107938604 41 TTCGTTCAGCTCCCTTCATCGAATGTCATGGGAGGGGTACC TTCGTTCAGCTCCCTTCATTGAATGTCATGGGAGGGGTACC < 41bp 0.515813117915532 0.71902231108306 NA NA prediction 0.406418386335056 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107938584 chrX:107938583 synonymous SNV . 0 20 hm7G_associated_SNPs_35114 0 0 0 0 2 COL4A5 chrX:107938497 3'AG 107938497 Downstream 87bp 32307 chrX 107938583 107938583 1 + C T UCEC 107938584 + 107938564 107938604 41 TTCGTTCAGCTCCCTTCATCGAATGTCATGGGAGGGGTACC TTCGTTCAGCTCCCTTCATTGAATGTCATGGGAGGGGTACC < 41bp 0.515813117915532 0.71902231108306 NA NA prediction 0.406418386335056 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107938584 chrX:107938583 synonymous SNV . 0 20 hm7G_associated_SNPs_35114 0 0 0 0 2 COL4A5 chrX:107938669 5'GT 107938669 Upstream 87bp 32308 chr8 145662242 145662242 1 - G A UCEC 145662241 - 145662221 145662261 41 ACCCAGGTGGCCAGGGCTGCGAAGGCATCACCCCCCTCCAC ACCCAGGTGGCCAGGGCTGTGAAGGCATCACCCCCCTCCAC < 41bp 0.492119584330554 0.703208609913591 NA NA prediction 0.406417219827182 Functional Gain - TONSL ENSG00000160949 CDS Human protein_coding chr8:145662241 chr8:145662242 synonymous SNV . 0 20 hm7G_associated_SNPs_35115 0 0 1 0 1 TONSL chr8:145662303 3'AG 145662303 Downstream 62bp 32309 chr2 223386653 223386653 1 + G A LUSC 223386654 + 223386634 223386674 41 CCCTCCTTATCTCTACTATGGACAGATACCAGGTAAGGTGG CCCTCCTTATCTCTACTATAGACAGATACCAGGTAAGGTGG < 41bp 0.520337257576992 0.723545524547088 NA NA prediction 0.406416533940191 Functional Gain - SGPP2 ENSG00000163082 CDS Human protein_coding chr2:223386654 chr2:223386653 nonsynonymous SNV 0.987 0 20 hm7G_associated_SNPs_35116 0 0 1 0 1 SGPP2 chr2:223386665 5'GT 223386665 Upstream 13bp 32310 chr17 7951723 7951723 1 + C T LIHC 7951724 + 7951704 7951744 41 AGGCCCCTGGGCACCTATCCGGATGAGCACTTCACAGAGGA AGGCCCCTGGGCACCTATCTGGATGAGCACTTCACAGAGGA < 41bp 0.521484759048616 0.724692163170731 NA NA prediction 0.40641480824423 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7951724 chr17:7951723 nonsynonymous SNV 0.773 3 20 hm7G_associated_SNPs_35117 0 0 0 0 1 ALOX15B chr17:7951704 3'AG 7951704 Downstream 20bp 32311 chr9 140850264 140850264 1 + G T LUAD 140850265 + 140850245 140850285 41 TGGAGTGGATCTTCAAGGCGGGTGAGGGCCCGTGGGAGCCA TGGAGTGGATCTTCAAGGCTGGTGAGGGCCCGTGGGAGCCA < 41bp 0.364594836733434 0.703204863247973 NA NA prediction 0.406409726495946 Functional Gain - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:140850265 chr9:140850264 synonymous SNV . 0 20 hm7G_associated_SNPs_35118 0 0 0 0 1 CACNA1B chr9:140850265 5'GT 140850265 Upstream 2bp 32312 chr3 128971775 128971775 1 + G T UCEC 128971776 + 128971756 128971796 41 AGATGTCTTGCATTGCAGAGGATGTCATCATTGTCACCAGC AGATGTCTTGCATTGCAGATGATGTCATCATTGTCACCAGC < 41bp 0.359822344685125 0.703204156186299 NA NA prediction 0.406408312372599 Functional Gain - COPG1 ENSG00000181789 CDS Human protein_coding chr3:128971776 chr3:128971775 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_35119 0 0 1 0 1 COPG1 chr3:128971719 3'AG 128971719 Downstream 57bp 32313 chr8 27308338 27308338 1 + C T COAD 27308339 + 27308319 27308359 41 GGCTGAAAAGGTCAAAATGCGGCAAATCCTGGACAAACAGC GGCTGAAAAGGTCAAAATGTGGCAAATCCTGGACAAACAGC < 41bp 0.53264627895084 0.735849829442905 NA NA prediction 0.406407100984129 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27308339 chr8:27308338 nonsynonymous SNV 0.938 2 20 hm7G_associated_SNPs_35120 0 0 1 0 1 PTK2B chr8:27308412 5'GT 27308412 Upstream 75bp 32314 chr14 24620062 24620062 1 + C T UCEC 24620063 + 24620043 24620083 41 GCAGCGCCAAGACAAGATGCGGGAAGAAGGCCTCCAGCTAG GCAGCGCCAAGACAAGATGTGGGAAGAAGGCCTCCAGCTAG < 41bp 0.518041095011567 0.721243598980452 NA NA prediction 0.40640500793777 Functional Gain - RNF31 ENSG00000092098 CDS Human protein_coding chr14:24620063 chr14:24620062 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_35121 0 0 1 0 1 RNF31 chr14:24620097 5'GT 24620097 Upstream 36bp 32315 chr21 17163932 17163932 1 + C T COAD 17163933 + 17163913 17163953 41 AAAGACAGGACAAAGCTCCCGTTGGGCTAAAGAATGTTGGC AAAGACAGGACAAAGCTCCTGTTGGGCTAAAGAATGTTGGC < 41bp 0.498807341596729 0.70319782331033 NA NA prediction 0.40639564662066 Functional Gain - USP25 ENSG00000155313 CDS Human protein_coding chr21:17163933 chr21:17163932 synonymous SNV . 0 20 hm7G_associated_SNPs_35125 0 0 1 0 1 USP25 chr21:17163983 5'GT 17163983 Upstream 52bp 32316 chr20 30659531 30659531 1 + C T STAD 30659532 + 30659512 30659552 41 TCTCAAAAACTGAAACCAGCGCCAGCCCACACTGTCCTGTG TCTCAAAAACTGAAACCAGTGCCAGCCCACACTGTCCTGTG < 41bp 0.491118138836792 0.703193323107808 NA NA prediction 0.406386646215617 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30659532 chr20:30659531 synonymous SNV . 0 20 hm7G_associated_SNPs_35127 0 0 0 0 2 HCK chr20:30659465 3'AG 30659465 Downstream 67bp 32317 chr20 30659531 30659531 1 + C T STAD 30659532 + 30659512 30659552 41 TCTCAAAAACTGAAACCAGCGCCAGCCCACACTGTCCTGTG TCTCAAAAACTGAAACCAGTGCCAGCCCACACTGTCCTGTG < 41bp 0.491118138836792 0.703193323107808 NA NA prediction 0.406386646215617 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30659532 chr20:30659531 synonymous SNV . 0 20 hm7G_associated_SNPs_35127 0 0 0 0 2 HCK chr20:30659585 5'GT 30659585 Upstream 55bp 32318 chr12 57861208 57861208 1 + C T COAD 57861209 + 57861189 57861229 41 AGCCATACATGTGTGAGCACGAGGGCTGCAGTAAAGCCTTC AGCCATACATGTGTGAGCATGAGGGCTGCAGTAAAGCCTTC < 41bp 0.555491639749534 0.758684451054513 NA NA prediction 0.406385622609959 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57861209 chr12:57861208 synonymous SNV . 0 20 hm7G_associated_SNPs_35128 0 0 0 0 2 GLI1 chr12:57861116 3'AG 57861116 Downstream 93bp 32319 chr12 57861208 57861208 1 + C T COAD 57861209 + 57861189 57861229 41 AGCCATACATGTGTGAGCACGAGGGCTGCAGTAAAGCCTTC AGCCATACATGTGTGAGCATGAGGGCTGCAGTAAAGCCTTC < 41bp 0.555491639749534 0.758684451054513 NA NA prediction 0.406385622609959 Functional Gain - GLI1 ENSG00000111087 CDS Human protein_coding chr12:57861209 chr12:57861208 synonymous SNV . 0 20 hm7G_associated_SNPs_35128 0 0 0 0 2 GLI1 chr12:57861280 5'GT 57861280 Upstream 73bp 32320 chr1 113057560 113057560 1 + C T CESC 113057561 + 113057541 113057581 41 TGGTTTGGTGAGCCGGCAGCGGCAGCTGTGCCAGCGTTACC TGGTTTGGTGAGCCGGCAGTGGCAGCTGTGCCAGCGTTACC < 41bp 0.563795989835107 0.766987542595319 NA NA prediction 0.406383105520423 Functional Gain - WNT2B ENSG00000134245 CDS Human protein_coding chr1:113057561 chr1:113057560 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35130 0 0 0 0 1 WNT2B chr1:113057496 3'AG 113057496 Downstream 65bp 32321 chr6 26385530 26385530 1 + C T PRAD 26385531 + 26385511 26385551 41 CCAGGAGAATGGGATCTACCGCTGTTACTTCCAAGAAGGCA CCAGGAGAATGGGATCTACTGCTGTTACTTCCAAGAAGGCA < 41bp 0.530785517941078 0.733976946462977 NA NA prediction 0.406382857043798 Functional Gain - BTN2A2 ENSG00000124508 CDS Human protein_coding chr6:26385531 chr6:26385530 nonsynonymous SNV 0.445 0 20 hm7G_associated_SNPs_35131 0 0 1 0 1 BTN2A2 chr6:26385590 5'GT 26385590 Upstream 61bp 32322 chrX 24552093 24552093 1 + C T UCEC 24552094 + 24552074 24552114 41 TTCCAGTTTTTAATAAGTCCGCATGGCGCCATTACAAGACC TTCCAGTTTTTAATAAGTCTGCATGGCGCCATTACAAGACC < 41bp 0.525252246919376 0.728440921253233 NA NA prediction 0.406377348667715 Functional Gain - PDK3 ENSG00000067992 CDS Human protein_coding chrX:24552094 chrX:24552093 synonymous SNV . 0 20 hm7G_associated_SNPs_35132 0 0 0 0 2 PDK3 chrX:24552046 3'AG 24552046 Downstream 48bp 32323 chrX 24552093 24552093 1 + C T UCEC 24552094 + 24552074 24552114 41 TTCCAGTTTTTAATAAGTCCGCATGGCGCCATTACAAGACC TTCCAGTTTTTAATAAGTCTGCATGGCGCCATTACAAGACC < 41bp 0.525252246919376 0.728440921253233 NA NA prediction 0.406377348667715 Functional Gain - PDK3 ENSG00000067992 CDS Human protein_coding chrX:24552094 chrX:24552093 synonymous SNV . 0 20 hm7G_associated_SNPs_35132 0 0 0 0 2 PDK3 chrX:24552185 5'GT 24552185 Upstream 93bp 32324 chr9 136269143 136269143 1 + G A rs17150554 136269144 + 136269124 136269164 41 CTGGTGAACAATGCCTACCGGGGACTGGCCAGCCTGGTGAA CTGGTGAACAATGCCTACCAGGGACTGGCCAGCCTGGTGAA < 41bp 0.554632018656274 0.757819312248882 NA NA prediction 0.406374587185216 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136269144 chr9:136269143 nonsynonymous SNV 0.367 0 20 hm7G_associated_SNPs_35135 0 0 0 0 2 STKLD1 chr9:136269044 3'AG 136269044 Downstream 100bp 32325 chr9 136269143 136269143 1 + G A rs17150554 136269144 + 136269124 136269164 41 CTGGTGAACAATGCCTACCGGGGACTGGCCAGCCTGGTGAA CTGGTGAACAATGCCTACCAGGGACTGGCCAGCCTGGTGAA < 41bp 0.554632018656274 0.757819312248882 NA NA prediction 0.406374587185216 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136269144 chr9:136269143 nonsynonymous SNV 0.367 0 20 hm7G_associated_SNPs_35135 0 0 0 0 2 STKLD1 chr9:136269172 5'GT 136269172 Upstream 30bp 32326 chr2 179319148 179319148 1 + G T LUAD 179319149 + 179319129 179319169 41 CCATATTGTAAATGACGTTGGGATTAACGTTGCTGGATCAG CCATATTGTAAATGACGTTTGGATTAACGTTGCTGGATCAG < 41bp 0.705646245375139 0.908832086487215 NA NA prediction 0.406371682224153 Functional Gain - DFNB59 ENSG00000204311 CDS Human protein_coding chr2:179319149 chr2:179319148 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_35136 0 0 0 0 1 DFNB59 chr2:179319059 3'AG 179319059 Downstream 90bp 32327 chr1 43805659 43805659 1 + G A SKCM 43805660 + 43805640 43805680 41 AGCTCTGACAGCAGAGGGTGGAAGCTGCCTCATCTCAGGAC AGCTCTGACAGCAGAGGGTAGAAGCTGCCTCATCTCAGGAC < 41bp 0.50723591415592 0.71041931951533 NA NA prediction 0.406366810718822 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43805660 chr1:43805659 nonsynonymous SNV 0.765 4 20 hm7G_associated_SNPs_35137 0 0 0 0 1 MPL chr1:43805635 3'AG 43805635 Downstream 25bp 32328 chr7 36194777 36194777 1 + C T STAD 36194778 + 36194758 36194798 41 GGCCAACAACCCCGGGGTGCGAGAGGTGGTGTGCATGACAC GGCCAACAACCCCGGGGTGTGAGAGGTGGTGTGCATGACAC < 41bp 0.528877254577638 0.732060339175483 NA NA prediction 0.406366169195689 Functional Gain - EEPD1 ENSG00000122547 CDS Human protein_coding chr7:36194778 chr7:36194777 stopgain 0.994 1 20 hm7G_associated_SNPs_35138 0 0 1 0 1 EEPD1 chr7:36194811 5'GT 36194811 Upstream 35bp 32329 chrX 2656284 2656284 1 + C T CESC 2656285 + 2656265 2656305 41 AGAGCCACCGGAATGCCAACGCAGAGCCAGCTGGTAAGAAG AGAGCCACCGGAATGCCAATGCAGAGCCAGCTGGTAAGAAG < 41bp 0.502479045544265 0.70566189452913 NA NA prediction 0.406365697969731 Functional Gain - CD99 ENSG00000002586 CDS Human protein_coding chrX:2656285 chrX:2656284 synonymous SNV . 0 20 hm7G_associated_SNPs_35139 0 0 1 1 3 CD99 chrX:2656241 3'AG 2656241 Downstream 44bp 32330 chrX 2656284 2656284 1 + C T CESC 2656285 + 2656265 2656305 41 AGAGCCACCGGAATGCCAACGCAGAGCCAGCTGGTAAGAAG AGAGCCACCGGAATGCCAATGCAGAGCCAGCTGGTAAGAAG < 41bp 0.502479045544265 0.70566189452913 NA NA prediction 0.406365697969731 Functional Gain - CD99 ENSG00000002586 CDS Human protein_coding chrX:2656285 chrX:2656284 synonymous SNV . 0 20 hm7G_associated_SNPs_35139 0 0 1 1 3 CD99 chrX:2656244 3'AG 2656244 Downstream 41bp 32331 chrX 2656284 2656284 1 + C T CESC 2656285 + 2656265 2656305 41 AGAGCCACCGGAATGCCAACGCAGAGCCAGCTGGTAAGAAG AGAGCCACCGGAATGCCAATGCAGAGCCAGCTGGTAAGAAG < 41bp 0.502479045544265 0.70566189452913 NA NA prediction 0.406365697969731 Functional Gain - CD99 ENSG00000002586 CDS Human protein_coding chrX:2656285 chrX:2656284 synonymous SNV . 0 20 hm7G_associated_SNPs_35139 0 0 1 1 3 CD99 chrX:2656297 5'GT 2656297 Upstream 14bp 32332 chr6 26373201 26373201 1 + C T UCEC 26373202 + 26373182 26373222 41 TCTTGCTGCTGCTTCTCGCCGGAGCCAGTTACTTCTTGTGG TCTTGCTGCTGCTTCTCGCTGGAGCCAGTTACTTCTTGTGG < 41bp 0.494823688110087 0.703182418319796 NA NA prediction 0.406364836639593 Functional Gain - BTN3A2 ENSG00000186470 CDS Human protein_coding chr6:26373202 chr6:26373201 synonymous SNV . 0 20 hm7G_associated_SNPs_35140 0 0 0 0 1 BTN3A2 chr6:26373125 3'AG 26373125 Downstream 77bp 32333 chr10 104809504 104809504 1 + G A UCEC 104809505 + 104809485 104809525 41 TGCAGCGGGTAAACAATGAGGGAGAAGGGGATCCATTTTAT TGCAGCGGGTAAACAATGAAGGAGAAGGGGATCCATTTTAT < 41bp 0.512442706882185 0.715624316805611 NA NA prediction 0.406363219846853 Functional Gain - CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104809505 chr10:104809504 synonymous SNV . 0 20 hm7G_associated_SNPs_35141 0 0 0 0 1 CNNM2 chr10:104809464 3'AG 104809464 Downstream 41bp 32334 chr3 121631883 121631883 1 + C T SKCM 121631884 + 121631864 121631904 41 TCAGAGTCCTATCATTGATCGGCCTGAGTCTAATAGCTTTG TCAGAGTCCTATCATTGATTGGCCTGAGTCTAATAGCTTTG < 41bp 0.536256710829128 0.739438208123659 NA NA prediction 0.406362994589062 Functional Gain - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121631884 chr3:121631883 synonymous SNV . 0 20 hm7G_associated_SNPs_35142 0 0 0 0 1 SLC15A2 chr3:121631967 5'GT 121631967 Upstream 85bp 32335 chr15 65856658 65856658 1 + C T SKCM 65856659 + 65856639 65856679 41 ATTGGAGTCACTACGTCACCGGTGCTGCCTTCTCTGATCCA ATTGGAGTCACTACGTCACTGGTGCTGCCTTCTCTGATCCA < 41bp 0.539788053403367 0.742969067589328 NA NA prediction 0.406362028371923 Functional Gain - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65856659 chr15:65856658 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_35143 0 0 1 2 1 HACD3 chr15:65856680 5'GT 65856680 Upstream 23bp 32336 chr17 12639539 12639539 1 + C T UCEC 12639540 + 12639520 12639560 41 TTGAAGAGGACAGCAGCAGCGATGGGCTTTCTCCGGATCAG TTGAAGAGGACAGCAGCAGTGATGGGCTTTCTCCGGATCAG < 41bp 0.490121068244868 0.703178921473922 NA NA prediction 0.406357842947843 Functional Gain - MYOCD ENSG00000141052;ENSG00000273452 CDS Human other chr17:12639540 chr17:12639539 synonymous SNV . 0 20 hm7G_associated_SNPs_35145 0 0 0 0 1 MYOCD chr17:12639478 3'AG 12639478 Downstream 62bp 32337 chr20 35517655 35517655 1 + G A rs200575225 35517656 + 35517636 35517676 41 CTGTCCTCTTCTCTCTAGTGGCCGGTTTGGGCTGTGGTTGG CTGTCCTCTTCTCTCTAGTAGCCGGTTTGGGCTGTGGTTGG < 41bp 0.510939795681511 0.714118048703427 NA NA prediction 0.406356506043832 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35517656 chr20:35517655 nonsynonymous SNV 0.938 4 20 hm7G_associated_SNPs_35146 0 0 0 0 1 TLDC2 chr20:35517654 3'AG 35517654 Downstream 2bp 32338 chr7 95442612 95442612 1 + G T OV 95442613 + 95442593 95442633 41 GAGCACTCCCAGTGAAGCTGGAAGCCAAGACTCAGGCGATC GAGCACTCCCAGTGAAGCTTGAAGCCAAGACTCAGGCGATC < 41bp 0.358814022163787 0.703176818624459 NA NA prediction 0.406353637248917 Functional Gain - DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95442613 chr7:95442612 stopgain 0.999 1 20 hm7G_associated_SNPs_35147 0 0 0 0 2 DYNC1I1 chr7:95442559 3'AG 95442559 Downstream 54bp 32339 chr7 95442612 95442612 1 + G T OV 95442613 + 95442593 95442633 41 GAGCACTCCCAGTGAAGCTGGAAGCCAAGACTCAGGCGATC GAGCACTCCCAGTGAAGCTTGAAGCCAAGACTCAGGCGATC < 41bp 0.358814022163787 0.703176818624459 NA NA prediction 0.406353637248917 Functional Gain - DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95442613 chr7:95442612 stopgain 0.999 1 20 hm7G_associated_SNPs_35147 0 0 0 0 2 DYNC1I1 chr7:95442649 5'GT 95442649 Upstream 38bp 32340 chr18 6868198 6868198 1 + C T COAD 6868199 + 6868179 6868219 41 GTTCATTCCAATGGATCACCGGAGCCTGGACAGCCAGTTCA GTTCATTCCAATGGATCACTGGAGCCTGGACAGCCAGTTCA < 41bp 0.543157006189987 0.746333760700807 NA NA prediction 0.40635350902164 Functional Gain - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6868199 chr18:6868198 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_35148 0 0 0 0 2 ARHGAP28 chr18:6868149 3'AG 6868149 Downstream 50bp 32341 chr18 6868198 6868198 1 + C T COAD 6868199 + 6868179 6868219 41 GTTCATTCCAATGGATCACCGGAGCCTGGACAGCCAGTTCA GTTCATTCCAATGGATCACTGGAGCCTGGACAGCCAGTTCA < 41bp 0.543157006189987 0.746333760700807 NA NA prediction 0.40635350902164 Functional Gain - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6868199 chr18:6868198 nonsynonymous SNV 0.019 0 20 hm7G_associated_SNPs_35148 0 0 0 0 2 ARHGAP28 chr18:6868233 5'GT 6868233 Upstream 36bp 32342 chr20 43057054 43057054 1 + C T UCEC 43057055 + 43057035 43057075 41 ATATGGGAACCAACGTCATCGTTGCCAACACAATGCCCACT ATATGGGAACCAACGTCATTGTTGCCAACACAATGCCCACT < 41bp 0.503153726171066 0.70632677203342 NA NA prediction 0.406346091724709 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43057055 chr20:43057054 synonymous SNV . 0 20 hm7G_associated_SNPs_35149 0 0 1 0 2 HNF4A chr20:43057097 5'GT 43057097 Upstream 44bp 32343 chr20 43057054 43057054 1 + C T UCEC 43057055 + 43057035 43057075 41 ATATGGGAACCAACGTCATCGTTGCCAACACAATGCCCACT ATATGGGAACCAACGTCATTGTTGCCAACACAATGCCCACT < 41bp 0.503153726171066 0.70632677203342 NA NA prediction 0.406346091724709 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43057055 chr20:43057054 synonymous SNV . 0 20 hm7G_associated_SNPs_35149 0 0 1 0 2 HNF4A chr20:43057127 5'GT 43057127 Upstream 74bp 32344 chr3 49739834 49739834 1 + G A STAD 49739835 + 49739815 49739855 41 CAGGAGAACGCCAGTGGCCGGGGGGTAGGTGTCCTCCAGGC CAGGAGAACGCCAGTGGCCAGGGGGTAGGTGTCCTCCAGGC < 41bp 0.557282571757278 0.760451730402499 NA NA prediction 0.406338317290442 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49739835 chr3:49739834 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_35152 0 0 1 0 1 RNF123 chr3:49739838 5'GT 49739838 Upstream 5bp 32345 chr16 88052090 88052090 1 + C T UCEC 88052091 + 88052071 88052111 41 CAACCCCGAGATGCGGGTACGCTGCGCCATCATCCCCTCCG CAACCCCGAGATGCGGGTATGCTGCGCCATCATCCCCTCCG < 41bp 0.540085613675005 0.743252842752452 NA NA prediction 0.406334458154894 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88052091 chr16:88052090 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_35154 0 0 1 0 1 BANP chr16:88052034 3'AG 88052034 Downstream 57bp 32346 chr2 44104983 44104983 1 + C T UCEC 44104984 + 44104964 44105004 41 TCATCGTCATTGGCCTCAGCGGTGGCTTCATGGTCCTGTAC TCATCGTCATTGGCCTCAGTGGTGGCTTCATGGTCCTGTAC < 41bp 0.503877847579223 0.707044018103894 NA NA prediction 0.406332341049343 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44104984 chr2:44104983 synonymous SNV . 0 20 hm7G_associated_SNPs_35155 0 0 0 0 1 ABCG8 chr2:44104915 3'AG 44104915 Downstream 69bp 32347 chr3 51979191 51979191 1 + C T COAD 51979192 + 51979172 51979212 41 TTCGGCCACAGCCAGCCCCCGCCCATCAATTCCCCTGAGCT TTCGGCCACAGCCAGCCCCTGCCCATCAATTCCCCTGAGCT < 41bp 0.523174292640744 0.726340245707227 NA NA prediction 0.406331906132964 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51979192 chr3:51979191 nonsynonymous SNV 0.871 0 20 hm7G_associated_SNPs_35156 0 0 0 0 1 PARP3 chr3:51979240 5'GT 51979240 Upstream 50bp 32348 chr18 77464813 77464813 1 + C T LUSC 77464814 + 77464794 77464834 41 GGTGAGCCCATGCTGCACACGCGCCTGCGTCCACACTGCAA GGTGAGCCCATGCTGCACATGCGCCTGCGTCCACACTGCAA < 41bp 0.525198894584078 0.728363811690972 NA NA prediction 0.406329834213788 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77464814 chr18:77464813 nonsynonymous SNV 0.874 4 20 hm7G_associated_SNPs_35157 0 0 0 0 1 CTDP1 chr18:77464767 3'AG 77464767 Downstream 47bp 32349 chr14 76905705 76905705 1 + G A LIHC 76905706 + 76905686 76905726 41 TGCTGAACAGGATGTCCTCGGACGACAGGCACCTGGGCTCC TGCTGAACAGGATGTCCTCAGACGACAGGCACCTGGGCTCC < 41bp 0.542476550271728 0.745640183293282 NA NA prediction 0.406327266043107 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76905706 chr14:76905705 synonymous SNV . 0 20 hm7G_associated_SNPs_35158 0 0 0 0 1 ESRRB chr14:76905684 3'AG 76905684 Downstream 22bp 32350 chrX 16850813 16850813 1 + C T STAD 16850814 + 16850794 16850834 41 GATGCCAAACTGCAGCAAACGACACAACTGATAAAAGAAGC GATGCCAAACTGCAGCAAATGACACAACTGATAAAAGAAGC < 41bp 0.498557197313363 0.703163579628576 NA NA prediction 0.406327159257153 Functional Gain - TXLNG ENSG00000086712 CDS Human protein_coding chrX:16850814 chrX:16850813 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_35159 0 0 0 0 2 TXLNG chrX:16850746 3'AG 16850746 Downstream 68bp 32351 chrX 16850813 16850813 1 + C T STAD 16850814 + 16850794 16850834 41 GATGCCAAACTGCAGCAAACGACACAACTGATAAAAGAAGC GATGCCAAACTGCAGCAAATGACACAACTGATAAAAGAAGC < 41bp 0.498557197313363 0.703163579628576 NA NA prediction 0.406327159257153 Functional Gain - TXLNG ENSG00000086712 CDS Human protein_coding chrX:16850814 chrX:16850813 nonsynonymous SNV 0.985 3 20 hm7G_associated_SNPs_35159 0 0 0 0 2 TXLNG chrX:16850865 5'GT 16850865 Upstream 53bp 32352 chr19 19356150 19356150 1 + C T PRAD 19356151 + 19356131 19356171 41 AACTGGCGAGAGAACCAGCCGGACAATTTCTTCGCGGGTGG AACTGGCGAGAGAACCAGCTGGACAATTTCTTCGCGGGTGG < 41bp 0.489846311001202 0.703163563298356 NA NA prediction 0.406327126596711 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19356151 chr19:19356150 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_35160 0 0 0 0 1 NCAN chr19:19356122 3'AG 19356122 Downstream 29bp 32353 chr10 94824257 94824257 1 + G A SKCM 94824258 + 94824238 94824278 41 TAATCATTCACAGTGCAAGGGAGCTGGGCCATGAGCCCTCC TAATCATTCACAGTGCAAGAGAGCTGGGCCATGAGCCCTCC < 41bp 0.539812655510608 0.742975551193079 NA NA prediction 0.406325791364943 Functional Gain - CYP26C1 ENSG00000187553 CDS Human protein_coding chr10:94824258 chr10:94824257 synonymous SNV . 0 20 hm7G_associated_SNPs_35161 0 0 0 0 1 CYP26C1 chr10:94824293 5'GT 94824293 Upstream 37bp 32354 chr22 36653431 36653431 1 + G T UCEC 36653432 + 36653412 36653452 41 GTAAGCCCCTCGGTGACTGGGCTGCTGGCACCATGGACCCA GTAAGCCCCTCGGTGACTGTGCTGCTGGCACCATGGACCCA < 41bp 0.384911187849823 0.703162558038916 NA NA prediction 0.406325116077831 Functional Gain - APOL1 ENSG00000100342 CDS Human protein_coding chr22:36653432 chr22:36653431 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_35162 0 0 1 0 1 APOL1 chr22:36653453 5'GT 36653453 Upstream 23bp 32355 chr20 42165081 42165081 1 + C T GBM 42165082 + 42165062 42165102 41 CCGAAGTATCGAAAGATTCCGCAGGAAGATTTCCAGAGTAA CCGAAGTATCGAAAGATTCTGCAGGAAGATTTCCAGAGTAA < 41bp 0.554724413462766 0.757884786046716 NA NA prediction 0.4063207451679 Functional Gain - L3MBTL1 ENSG00000185513 CDS Human protein_coding chr20:42165082 chr20:42165081 nonsynonymous SNV 0.948 0 20 hm7G_associated_SNPs_35164 0 0 0 0 1 L3MBTL1 chr20:42165049 3'AG 42165049 Downstream 33bp 32356 chr20 62292756 62292756 1 + C T SKCM 62292757 + 62292737 62292777 41 CCGAGACGGCATCTCTGCCCGCAAGATTGCCGAGAGGGCGC CCGAGACGGCATCTCTGCCTGCAAGATTGCCGAGAGGGCGC < 41bp 0.539789939421211 0.742949765157693 NA NA prediction 0.406319651472965 Functional Gain - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62292757 chr20:62292756 nonsynonymous SNV 0.674 2 20 hm7G_associated_SNPs_35165 0 0 0 0 1 RTEL1 chr20:62292849 5'GT 62292849 Upstream 94bp 32357 chr2 201527656 201527656 1 + C T UCEC 201527657 + 201527637 201527677 41 TTTATGGAGCTGCCTGTTCCGAGGTTGAAATAGACTGCCTG TTTATGGAGCTGCCTGTTCTGAGGTTGAAATAGACTGCCTG < 41bp 0.553677075935032 0.756835405309099 NA NA prediction 0.406316658748133 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201527657 chr2:201527656 synonymous SNV . 0 20 hm7G_associated_SNPs_35166 0 0 0 0 2 AOX1 chr2:201527578 3'AG 201527578 Downstream 79bp 32358 chr2 201527656 201527656 1 + C T UCEC 201527657 + 201527637 201527677 41 TTTATGGAGCTGCCTGTTCCGAGGTTGAAATAGACTGCCTG TTTATGGAGCTGCCTGTTCTGAGGTTGAAATAGACTGCCTG < 41bp 0.553677075935032 0.756835405309099 NA NA prediction 0.406316658748133 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201527657 chr2:201527656 synonymous SNV . 0 20 hm7G_associated_SNPs_35166 0 0 0 0 2 AOX1 chr2:201527692 5'GT 201527692 Upstream 37bp 32359 chr5 76645274 76645274 1 + G T LUAD 76645275 + 76645255 76645295 41 AGCCTTCGAAAGGATGATGGGCTACCACAAAGGTGAGCTCC AGCCTTCGAAAGGATGATGTGCTACCACAAAGGTGAGCTCC < 41bp 0.708857215447029 0.912011518872748 NA NA prediction 0.406308606851437 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76645275 chr5:76645274 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35169 0 0 0 0 1 PDE8B chr5:76645244 3'AG 76645244 Downstream 31bp 32360 chr1 156834197 156834197 1 + G A LUSC 156834198 + 156834178 156834218 41 TGGAGCTCCGTGATCTGAGGGGCCTGGGGGAGCTGAGAAAC TGGAGCTCCGTGATCTGAGAGGCCTGGGGGAGCTGAGAAAC < 41bp 0.576695912683733 0.779850082016155 NA NA prediction 0.406308338664844 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156834198 chr1:156834197 synonymous SNV . 0 20 hm7G_associated_SNPs_35170 0 0 0 0 2 NTRK1 chr1:156834146 3'AG 156834146 Downstream 52bp 32361 chr1 156834197 156834197 1 + G A LUSC 156834198 + 156834178 156834218 41 TGGAGCTCCGTGATCTGAGGGGCCTGGGGGAGCTGAGAAAC TGGAGCTCCGTGATCTGAGAGGCCTGGGGGAGCTGAGAAAC < 41bp 0.576695912683733 0.779850082016155 NA NA prediction 0.406308338664844 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156834198 chr1:156834197 synonymous SNV . 0 20 hm7G_associated_SNPs_35170 0 0 0 0 2 NTRK1 chr1:156834220 5'GT 156834220 Upstream 24bp 32362 chr20 57598639 57598639 1 + C T UCEC 57598640 + 57598620 57598660 41 TAGGAGCTCTCTTTCAACCCGACAGTTTTGTCCATGGTATG TAGGAGCTCTCTTTCAACCTGACAGTTTTGTCCATGGTATG < 41bp 0.536102327748021 0.739254591199474 NA NA prediction 0.406304526902905 Functional Gain - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598640 chr20:57598639 synonymous SNV . 0 20 hm7G_associated_SNPs_35173 0 0 1 0 2 TUBB1 chr20:57598545 3'AG 57598545 Downstream 95bp 32363 chr20 57598639 57598639 1 + C T UCEC 57598640 + 57598620 57598660 41 TAGGAGCTCTCTTTCAACCCGACAGTTTTGTCCATGGTATG TAGGAGCTCTCTTTCAACCTGACAGTTTTGTCCATGGTATG < 41bp 0.536102327748021 0.739254591199474 NA NA prediction 0.406304526902905 Functional Gain - TUBB1 ENSG00000101162 CDS Human protein_coding chr20:57598640 chr20:57598639 synonymous SNV . 0 20 hm7G_associated_SNPs_35173 0 0 1 0 2 TUBB1 chr20:57598655 5'GT 57598655 Upstream 17bp 32364 chrX 152827601 152827601 1 + C T UCEC 152827602 + 152827582 152827622 41 GCCCTTCGCAGATTGTCATCGTCCAGTTTGGCGGGAAGCCC GCCCTTCGCAGATTGTCATTGTCCAGTTTGGCGGGAAGCCC < 41bp 0.507410887491475 0.710560137339337 NA NA prediction 0.406298499695723 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152827602 chrX:152827601 synonymous SNV . 0 20 hm7G_associated_SNPs_35174 0 0 0 0 1 ATP2B3 chrX:152827700 5'GT 152827700 Upstream 100bp 32365 chr7 23205373 23205373 1 + C T LUSC 23205374 + 23205354 23205394 41 AACGAAGAGATGCAGCATGCGTGTTTTGGGACAATGTAGTA AACGAAGAGATGCAGCATGTGTGTTTTGGGACAATGTAGTA < 41bp 0.516019466634783 0.719167495553679 NA NA prediction 0.406296057837792 Functional Gain - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23205374 chr7:23205373 synonymous SNV . 0 20 hm7G_associated_SNPs_35175 0 0 1 0 1 KLHL7 chr7:23205317 3'AG 23205317 Downstream 57bp 32366 chr11 124740559 124740559 1 + C T rs151168595 124740560 + 124740540 124740580 41 AGTGCCGAAGATGAGGGAACGTACACCTGTGTGGCGGAGAA AGTGCCGAAGATGAGGGAATGTACACCTGTGTGGCGGAGAA < 41bp 0.519783149927945 0.722931173552577 NA NA prediction 0.406296047249263 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124740560 chr11:124740559 nonsynonymous SNV 0.775 2 20 hm7G_associated_SNPs_35176 1 0 0 0 2 ROBO3 chr11:124740497 3'AG 124740497 Downstream 63bp 32367 chr11 124740559 124740559 1 + C T rs151168595 124740560 + 124740540 124740580 41 AGTGCCGAAGATGAGGGAACGTACACCTGTGTGGCGGAGAA AGTGCCGAAGATGAGGGAATGTACACCTGTGTGGCGGAGAA < 41bp 0.519783149927945 0.722931173552577 NA NA prediction 0.406296047249263 Functional Gain - ROBO3 ENSG00000154134 CDS Human protein_coding chr11:124740560 chr11:124740559 nonsynonymous SNV 0.775 2 20 hm7G_associated_SNPs_35176 1 0 0 0 2 ROBO3 chr11:124740624 5'GT 124740624 Upstream 66bp 32368 chr17 73748358 73748358 1 + G A SKCM 73748359 + 73748339 73748379 41 CCTACCGCTACACGGTGAAGGCGCGCAACGGGGCCGGCTGG CCTACCGCTACACGGTGAAAGCGCGCAACGGGGCCGGCTGG < 41bp 0.488355528580653 0.703147111484184 NA NA prediction 0.406294222968368 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73748359 chr17:73748358 synonymous SNV . 0 20 hm7G_associated_SNPs_35177 0 0 0 0 1 ITGB4 chr17:73748437 5'GT 73748437 Upstream 80bp 32369 chr6 151270192 151270192 1 + C T BLCA 151270193 + 151270173 151270213 41 GGAATAAATAAGACTGATCCGAGCACACTGACAGAAGAGGA GGAATAAATAAGACTGATCTGAGCACACTGACAGAAGAGGA < 41bp 0.527873577452813 0.731020304256013 NA NA prediction 0.406293453606399 Functional Gain - MTHFD1L ENSG00000120254 CDS Human protein_coding chr6:151270193 chr6:151270192 nonsynonymous SNV 0.733 4 20 hm7G_associated_SNPs_35178 0 0 1 0 2 MTHFD1L chr6:151270167 3'AG 151270167 Downstream 26bp 32370 chr6 151270192 151270192 1 + C T BLCA 151270193 + 151270173 151270213 41 GGAATAAATAAGACTGATCCGAGCACACTGACAGAAGAGGA GGAATAAATAAGACTGATCTGAGCACACTGACAGAAGAGGA < 41bp 0.527873577452813 0.731020304256013 NA NA prediction 0.406293453606399 Functional Gain - MTHFD1L ENSG00000120254 CDS Human protein_coding chr6:151270193 chr6:151270192 nonsynonymous SNV 0.733 4 20 hm7G_associated_SNPs_35178 0 0 1 0 2 MTHFD1L chr6:151270269 5'GT 151270269 Upstream 78bp 32371 chr8 87568512 87568512 1 + C T UCEC 87568513 + 87568493 87568533 41 GTCTCCGCTCCCCATTGGGCGAAGTGGCCATCAGAGATATT GTCTCCGCTCCCCATTGGGTGAAGTGGCCATCAGAGATATT < 41bp 0.494643534589971 0.703143090177749 NA NA prediction 0.406286180355498 Functional Gain - CPNE3 ENSG00000085719 CDS Human protein_coding chr8:87568513 chr8:87568512 synonymous SNV . 0 20 hm7G_associated_SNPs_35181 0 0 1 0 1 CPNE3 chr8:87568566 5'GT 87568566 Upstream 55bp 32372 chr17 7950319 7950319 1 + G A rs140623478 7950320 + 7950300 7950340 41 TGTCTGCCTGAGGATATCCGGACCCGAGGAGTTGAAGACAT TGTCTGCCTGAGGATATCCAGACCCGAGGAGTTGAAGACAT < 41bp 0.508076660648071 0.711219686877026 NA NA prediction 0.40628605245791 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7950320 chr17:7950319 nonsynonymous SNV 0.204 0 20 hm7G_associated_SNPs_35182 0 0 0 0 3 ALOX15B chr17:7950225 3'AG 7950225 Downstream 95bp 32373 chr17 7950319 7950319 1 + G A rs140623478 7950320 + 7950300 7950340 41 TGTCTGCCTGAGGATATCCGGACCCGAGGAGTTGAAGACAT TGTCTGCCTGAGGATATCCAGACCCGAGGAGTTGAAGACAT < 41bp 0.508076660648071 0.711219686877026 NA NA prediction 0.40628605245791 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7950320 chr17:7950319 nonsynonymous SNV 0.204 0 20 hm7G_associated_SNPs_35182 0 0 0 0 3 ALOX15B chr17:7950381 5'GT 7950381 Upstream 63bp 32374 chr17 7950319 7950319 1 + G A rs140623478 7950320 + 7950300 7950340 41 TGTCTGCCTGAGGATATCCGGACCCGAGGAGTTGAAGACAT TGTCTGCCTGAGGATATCCAGACCCGAGGAGTTGAAGACAT < 41bp 0.508076660648071 0.711219686877026 NA NA prediction 0.40628605245791 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7950320 chr17:7950319 nonsynonymous SNV 0.204 0 20 hm7G_associated_SNPs_35182 0 0 0 0 3 ALOX15B chr17:7950394 5'GT 7950394 Upstream 76bp 32375 chr10 85968015 85968015 1 + C T UCEC 85968016 + 85967996 85968036 41 GTGGACCTCAACAACCACCCGCCAACATTCTATGGAGAGAG GTGGACCTCAACAACCACCTGCCAACATTCTATGGAGAGAG < 41bp 0.561352661226795 0.764494013077484 NA NA prediction 0.406282703701377 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85968016 chr10:85968015 nonsynonymous SNV 0.330 3 20 hm7G_associated_SNPs_35183 0 0 0 0 1 CDHR1 chr10:85967930 3'AG 85967930 Downstream 86bp 32376 chr19 40978616 40978616 1 + C T HNSC 40978617 + 40978597 40978637 41 CCGCTGGGAGAGTCCGGATCGGGGCTGGGAGCGGGAGCAGC CCGCTGGGAGAGTCCGGATTGGGGCTGGGAGCGGGAGCAGC < 41bp 0.529551347442319 0.732689978525738 NA NA prediction 0.406277262166838 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:40978617 chr19:40978616 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_35186 0 0 0 0 1 SPTBN4 chr19:40978697 5'GT 40978697 Upstream 82bp 32377 chr11 93412659 93412659 1 + C T UCEC 93412660 + 93412640 93412680 41 AGCACAAGAGAGAATGGAACGGTTTGAAAAGGCACATGTAC AGCACAAGAGAGAATGGAATGGTTTGAAAAGGCACATGTAC < 41bp 0.51893191896144 0.722069414781509 NA NA prediction 0.406274991640138 Functional Gain - CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412660 chr11:93412659 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_35187 0 0 1 0 2 CEP295 chr11:93412578 3'AG 93412578 Downstream 82bp 32378 chr11 93412659 93412659 1 + C T UCEC 93412660 + 93412640 93412680 41 AGCACAAGAGAGAATGGAACGGTTTGAAAAGGCACATGTAC AGCACAAGAGAGAATGGAATGGTTTGAAAAGGCACATGTAC < 41bp 0.51893191896144 0.722069414781509 NA NA prediction 0.406274991640138 Functional Gain - CEP295 ENSG00000166004 CDS Human protein_coding chr11:93412660 chr11:93412659 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_35187 0 0 1 0 2 CEP295 chr11:93412718 5'GT 93412718 Upstream 60bp 32379 chr9 19358054 19358054 1 + C T UCEC 19358055 + 19358035 19358075 41 GCGAAATGTGTCTTTGACTCGAAGTCACAGTGTTGGAGGCC GCGAAATGTGTCTTTGACTTGAAGTCACAGTGTTGGAGGCC < 41bp 0.539264943548624 0.742399545455299 NA NA prediction 0.406269203813349 Functional Gain - DENND4C ENSG00000137145 CDS Human protein_coding chr9:19358055 chr9:19358054 stopgain 1.000 0 20 hm7G_associated_SNPs_35191 0 0 0 0 1 DENND4C chr9:19357963 3'AG 19357963 Downstream 92bp 32380 chr12 133084897 133084897 1 + C T UCEC 133084898 + 133084878 133084918 41 AGGACCTCGAACCCGCCTGCGATGGGGCGAGAAAGGTCCCA AGGACCTCGAACCCGCCTGTGATGGGGCGAGAAAGGTCCCA < 41bp 0.521432301703866 0.724566771007419 NA NA prediction 0.406268938607106 Functional Gain - FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133084898 chr12:133084897 synonymous SNV . 0 20 hm7G_associated_SNPs_35192 0 0 1 0 1 FBRSL1 chr12:133084936 5'GT 133084936 Upstream 40bp 32381 chr13 31491581 31491581 1 + G T COAD 31491582 + 31491562 31491602 41 TGTGATTATAAAGACTACAGGGAAACTATATTGAGCAAACC TGTGATTATAAAGACTACATGGAAACTATATTGAGCAAACC < 41bp 0.697203616822957 0.900335267277494 NA NA prediction 0.406263300909073 Functional Gain - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31491582 chr13:31491581 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35193 0 0 0 0 2 MEDAG chr13:31491540 3'AG 31491540 Downstream 42bp 32382 chr13 31491581 31491581 1 + G T COAD 31491582 + 31491562 31491602 41 TGTGATTATAAAGACTACAGGGAAACTATATTGAGCAAACC TGTGATTATAAAGACTACATGGAAACTATATTGAGCAAACC < 41bp 0.697203616822957 0.900335267277494 NA NA prediction 0.406263300909073 Functional Gain - MEDAG ENSG00000102802 CDS Human protein_coding chr13:31491582 chr13:31491581 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35193 0 0 0 0 2 MEDAG chr13:31491649 5'GT 31491649 Upstream 69bp 32383 chr1 43775113 43775113 1 + C T GBM 43775114 + 43775094 43775134 41 AGCTGAGTTCGAGGTGCCCCGCTTGGTTCTTGCGGACAGTG AGCTGAGTTCGAGGTGCCCTGCTTGGTTCTTGCGGACAGTG < 41bp 0.49409946378862 0.703128950637746 NA NA prediction 0.406257901275492 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43775114 chr1:43775113 nonsynonymous SNV 0.912 2 20 hm7G_associated_SNPs_35194 0 0 0 0 1 TIE1 chr1:43775059 3'AG 43775059 Downstream 55bp 32384 chr20 34021804 34021804 1 - C T COAD 34021803 - 34021783 34021823 41 ACCTGCTGTGTGCCCACGCGGCTGAGTCCCATCAGCATCCT ACCTGCTGTGTGCCCACGCAGCTGAGTCCCATCAGCATCCT < 41bp 0.549794732480585 0.752921186499412 NA NA prediction 0.406252908037654 Functional Gain - GDF5;GDF5OS ENSG00000125965 CDS Human protein_coding chr20:34021803 chr20:34021804 nonsynonymous SNV 0.960 4 20 hm7G_associated_SNPs_35196 0 0 0 0 1 GDF5;GDF5OS chr20:34021711 5'GT 34021711 Upstream 94bp 32385 chr2 220501055 220501055 1 + C T rs111434009 220501056 + 220501036 220501076 41 AGGGGCTGATGGGCGTGTCCGAGCTGATCGTGTCCACCGCT AGGGGCTGATGGGCGTGTCTGAGCTGATCGTGTCCACCGCT < 41bp 0.524467608940904 0.727593735567054 NA NA prediction 0.406252253252299 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220501056 chr2:220501055 synonymous SNV . 0 20 hm7G_associated_SNPs_35197 0 0 0 0 1 SLC4A3 chr2:220501024 3'AG 220501024 Downstream 32bp 32386 chr1 158151457 158151457 1 + C T UCEC 158151458 + 158151438 158151478 41 GCATATATTTCGGGTTTATCGAAGCAGCTTCACCAGGGACG GCATATATTTCGGGTTTATTGAAGCAGCTTCACCAGGGACG < 41bp 0.520604872351854 0.723730603319588 NA NA prediction 0.406251461935468 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151458 chr1:158151457 stopgain 0.009 0 20 hm7G_associated_SNPs_35198 0 0 0 0 1 CD1D chr1:158151511 5'GT 158151511 Upstream 55bp 32387 chr15 74467244 74467244 1 + G A rs137923011 74467245 + 74467225 74467265 41 GGGCGCTTCTCCTGGGCCTGGCTCAGGCCTGCCCTGAGCCC GGGCGCTTCTCCTGGGCCTAGCTCAGGCCTGCCCTGAGCCC < 41bp 0.601564870406319 0.804690215073527 NA NA prediction 0.406250689334416 Functional Gain - ISLR ENSG00000129009 CDS Human antisense chr15:74467245 chr15:74467244 synonymous SNV . 0 20 hm7G_associated_SNPs_35199 0 0 0 0 1 ISLR chr15:74467192 3'AG 74467192 Downstream 53bp 32388 chr4 72205191 72205191 1 + G T BRCA 72205192 + 72205172 72205212 41 TGAGCTGCTGGCCGTGGATGGGCAGGAGATGGAGTGGAAGG TGAGCTGCTGGCCGTGGATTGGCAGGAGATGGAGTGGAAGG < 41bp 0.369279162637861 0.703124732151035 NA NA prediction 0.40624946430207 Functional Gain - SLC4A4 ENSG00000080493 CDS Human protein_coding chr4:72205192 chr4:72205191 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_35200 0 0 0 0 1 SLC4A4 chr4:72205222 5'GT 72205222 Upstream 32bp 32389 chr22 20127392 20127392 1 + G T CESC 20127393 + 20127373 20127413 41 TGAACCACGCTGAGGGGCTGGGAGCCGCGCACACCACCATC TGAACCACGCTGAGGGGCTTGGAGCCGCGCACACCACCATC < 41bp 0.342797233090844 0.703122443398476 NA NA prediction 0.406244886796952 Functional Gain - ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20127393 chr22:20127392 synonymous SNV . 0 20 hm7G_associated_SNPs_35202 0 0 1 0 1 ZDHHC8 chr22:20127415 5'GT 20127415 Upstream 24bp 32390 chr2 71189929 71189929 1 + C T UCEC 71189930 + 71189910 71189950 41 CGAGCGGATCATCACCCCGCGCCTGGCGCTGACCACTGCTG CGAGCGGATCATCACCCCGTGCCTGGCGCTGACCACTGCTG < 41bp 0.490203566321586 0.703117955568015 NA NA prediction 0.406235911136029 Functional Gain - ATP6V1B1 ENSG00000116039 CDS Human protein_coding chr2:71189930 chr2:71189929 nonsynonymous SNV 0.973 4 20 hm7G_associated_SNPs_35204 0 0 0 0 1 ATP6V1B1 chr2:71189907 3'AG 71189907 Downstream 23bp 32391 chr8 124204126 124204126 1 + C T SKCM 124204127 + 124204107 124204147 41 CCAACAAGCGTGGGGTGTTCGTTTGTGTGCTCCTGGACCAG CCAACAAGCGTGGGGTGTTTGTTTGTGTGCTCCTGGACCAG < 41bp 0.505828313727855 0.708945664237173 NA NA prediction 0.406234701018636 Functional Gain - FAM83A ENSG00000147689 CDS Human protein_coding chr8:124204127 chr8:124204126 synonymous SNV . 0 20 hm7G_associated_SNPs_35205 0 0 1 0 2 FAM83A chr8:124204043 3'AG 124204043 Downstream 84bp 32392 chr8 124204126 124204126 1 + C T SKCM 124204127 + 124204107 124204147 41 CCAACAAGCGTGGGGTGTTCGTTTGTGTGCTCCTGGACCAG CCAACAAGCGTGGGGTGTTTGTTTGTGTGCTCCTGGACCAG < 41bp 0.505828313727855 0.708945664237173 NA NA prediction 0.406234701018636 Functional Gain - FAM83A ENSG00000147689 CDS Human protein_coding chr8:124204127 chr8:124204126 synonymous SNV . 0 20 hm7G_associated_SNPs_35205 0 0 1 0 2 FAM83A chr8:124204210 5'GT 124204210 Upstream 85bp 32393 chr17 45360910 45360910 1 + G A COAD 45360911 + 45360891 45360931 41 AGGATTGCACTCCGGCTCCGGCCAGGTAGGGCTGGGACTCT AGGATTGCACTCCGGCTCCAGCCAGGTAGGGCTGGGACTCT < 41bp 0.492720769682238 0.703116912640917 NA NA prediction 0.406233825281834 Functional Gain - ITGB3 ENSG00000259207;ENSG00000259753 CDS Human other chr17:45360911 chr17:45360910 nonsynonymous SNV 0.800 4 20 hm7G_associated_SNPs_35206 0 0 0 0 1 ITGB3 chr17:45360915 5'GT 45360915 Upstream 6bp 32394 chr20 37126021 37126021 1 + C T BLCA 37126022 + 37126002 37126042 41 ACAGGGTTCCAGTCAGATTCGACTATGCTTACAGGTCCTGA ACAGGGTTCCAGTCAGATTTGACTATGCTTACAGGTCCTGA < 41bp 0.538827245636763 0.741943519209488 NA NA prediction 0.40623254714545 Functional Gain - RALGAPB ENSG00000170471 CDS Human protein_coding chr20:37126022 chr20:37126021 stopgain 0.999 1 20 hm7G_associated_SNPs_35207 0 0 1 0 1 RALGAPB chr20:37125996 3'AG 37125996 Downstream 26bp 32395 chr9 136406086 136406086 1 + C T STAD 136406087 + 136406067 136406107 41 ACGGTAGCAGCTGCACCCACGTGACGGGCAACTATCGCAAG ACGGTAGCAGCTGCACCCATGTGACGGGCAACTATCGCAAG < 41bp 0.506615654190491 0.709731344032036 NA NA prediction 0.40623137968309 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136406087 chr9:136406086 synonymous SNV . 0 20 hm7G_associated_SNPs_35209 0 0 0 0 2 ADAMTSL2 chr9:136406000 3'AG 136406000 Downstream 87bp 32396 chr9 136406086 136406086 1 + C T STAD 136406087 + 136406067 136406107 41 ACGGTAGCAGCTGCACCCACGTGACGGGCAACTATCGCAAG ACGGTAGCAGCTGCACCCATGTGACGGGCAACTATCGCAAG < 41bp 0.506615654190491 0.709731344032036 NA NA prediction 0.40623137968309 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136406087 chr9:136406086 synonymous SNV . 0 20 hm7G_associated_SNPs_35209 0 0 0 0 2 ADAMTSL2 chr9:136406123 5'GT 136406123 Upstream 38bp 32397 chr11 1480454 1480454 1 + C T COAD 1480455 + 1480435 1480475 41 TATGGAAATGATGACGGGGCGGCTTTCCAAATGTGGTAAGA TATGGAAATGATGACGGGGTGGCTTTCCAAATGTGGTAAGA < 41bp 0.498588962653199 0.703110176075125 NA NA prediction 0.40622035215025 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1480455 chr11:1480454 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_35213 0 0 1 0 3 BRSK2 chr11:1480422 3'AG 1480422 Downstream 33bp 32398 chr11 1480454 1480454 1 + C T COAD 1480455 + 1480435 1480475 41 TATGGAAATGATGACGGGGCGGCTTTCCAAATGTGGTAAGA TATGGAAATGATGACGGGGTGGCTTTCCAAATGTGGTAAGA < 41bp 0.498588962653199 0.703110176075125 NA NA prediction 0.40622035215025 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1480455 chr11:1480454 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_35213 0 0 1 0 3 BRSK2 chr11:1480466 5'GT 1480466 Upstream 13bp 32399 chr11 1480454 1480454 1 + C T COAD 1480455 + 1480435 1480475 41 TATGGAAATGATGACGGGGCGGCTTTCCAAATGTGGTAAGA TATGGAAATGATGACGGGGTGGCTTTCCAAATGTGGTAAGA < 41bp 0.498588962653199 0.703110176075125 NA NA prediction 0.40622035215025 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1480455 chr11:1480454 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_35213 0 0 1 0 3 BRSK2 chr11:1480469 5'GT 1480469 Upstream 16bp 32400 chr14 24647330 24647330 1 + C T UCEC 24647331 + 24647311 24647351 41 CCCCCCACCTCCTCGCCGCCGCCGTCGTCGCCGGTTACTGT CCCCCCACCTCCTCGCCGCTGCCGTCGTCGCCGGTTACTGT < 41bp 0.491209825039809 0.703109837271918 NA NA prediction 0.406219674543837 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647331 chr14:24647330 nonsynonymous SNV 0.051 1 20 hm7G_associated_SNPs_35214 0 0 0 0 2 REC8 chr14:24647297 3'AG 24647297 Downstream 34bp 32401 chr14 24647330 24647330 1 + C T UCEC 24647331 + 24647311 24647351 41 CCCCCCACCTCCTCGCCGCCGCCGTCGTCGCCGGTTACTGT CCCCCCACCTCCTCGCCGCTGCCGTCGTCGCCGGTTACTGT < 41bp 0.491209825039809 0.703109837271918 NA NA prediction 0.406219674543837 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647331 chr14:24647330 nonsynonymous SNV 0.051 1 20 hm7G_associated_SNPs_35214 0 0 0 0 2 REC8 chr14:24647428 5'GT 24647428 Upstream 99bp 32402 chr14 24569206 24569206 1 + C T HNSC 24569207 + 24569187 24569227 41 TTCACTTCTCCTAACAGGTCGACTCCGGGCCATCAACCCTG TTCACTTCTCCTAACAGGTTGACTCCGGGCCATCAACCCTG < 41bp 0.521121219600671 0.724226696860939 NA NA prediction 0.406210954520536 Functional Gain - PCK2 ENSG00000100889 CDS Human protein_coding chr14:24569207 chr14:24569206 stopgain 0.998 0 20 hm7G_associated_SNPs_35217 0 0 1 0 1 PCK2 chr14:24569204 3'AG 24569204 Downstream 3bp 32403 chr16 84793794 84793794 1 + C T CESC 84793795 + 84793775 84793815 41 CAGCTCTTGGAGATAAAATCGTGAGGGATATTCGCCCTGGA CAGCTCTTGGAGATAAAATTGTGAGGGATATTCGCCCTGGA < 41bp 0.511366305902831 0.714471604882309 NA NA prediction 0.406210597958955 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84793795 chr16:84793794 synonymous SNV . 0 20 hm7G_associated_SNPs_35218 0 0 1 0 2 USP10 chr16:84793778 3'AG 84793778 Downstream 17bp 32404 chr16 84793794 84793794 1 + C T CESC 84793795 + 84793775 84793815 41 CAGCTCTTGGAGATAAAATCGTGAGGGATATTCGCCCTGGA CAGCTCTTGGAGATAAAATTGTGAGGGATATTCGCCCTGGA < 41bp 0.511366305902831 0.714471604882309 NA NA prediction 0.406210597958955 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84793795 chr16:84793794 synonymous SNV . 0 20 hm7G_associated_SNPs_35218 0 0 1 0 2 USP10 chr16:84793881 5'GT 84793881 Upstream 88bp 32405 chr7 86415655 86415655 1 + C T GBM 86415656 + 86415636 86415676 41 CAAACTCAGTGATAAGTCGCGCTATGATTACTTTGCCAGGA CAAACTCAGTGATAAGTCGTGCTATGATTACTTTGCCAGGA < 41bp 0.492966530651828 0.703104085113567 NA NA prediction 0.406208170227135 Functional Gain - GRM3 ENSG00000198822 CDS Human protein_coding chr7:86415656 chr7:86415655 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_35220 0 0 0 0 1 GRM3 chr7:86415577 3'AG 86415577 Downstream 79bp 32406 chr19 39908686 39908686 1 + C T COAD 39908687 + 39908667 39908707 41 GCTGCTCTTCCTGTTCTCTCGGATGCTGCTGGTGGCCAAGC GCTGCTCTTCCTGTTCTCTTGGATGCTGCTGGTGGCCAAGC < 41bp 0.553360124121676 0.756462624788912 NA NA prediction 0.406205001334474 Functional Gain - PLEKHG2 ENSG00000090924 CDS Human protein_coding chr19:39908687 chr19:39908686 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_35223 0 0 1 0 1 PLEKHG2 chr19:39908745 5'GT 39908745 Upstream 60bp 32407 chr5 3600335 3600335 1 + G A STAD 3600336 + 3600316 3600356 41 TGCCCCGGGGGCACTCAATGGAGACAAGGCCTCGGTCCGCA TGCCCCGGGGGCACTCAATAGAGACAAGGCCTCGGTCCGCA < 41bp 0.536871180307558 0.73997340962055 NA NA prediction 0.406204458625984 Functional Gain - IRX1 ENSG00000170549 CDS Human protein_coding chr5:3600336 chr5:3600335 nonsynonymous SNV 0.041 0 20 hm7G_associated_SNPs_35225 0 0 0 0 1 IRX1 chr5:3600374 5'GT 3600374 Upstream 40bp 32408 chr3 50197097 50197097 1 + C T rs1046953 50197098 + 50197078 50197118 41 TCTGGGCTTCCCTACTGACCGGGGCCTGGCCATCCTTCCCC TCTGGGCTTCCCTACTGACTGGGGCCTGGCCATCCTTCCCC < 41bp 0.530226621697742 0.733325951876965 NA NA prediction 0.406198660358445 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50197098 chr3:50197097 synonymous SNV . 0 20 hm7G_associated_SNPs_35226 0 0 1 0 2 SEMA3F chr3:50197008 3'AG 50197008 Downstream 90bp 32409 chr3 50197097 50197097 1 + C T rs1046953 50197098 + 50197078 50197118 41 TCTGGGCTTCCCTACTGACCGGGGCCTGGCCATCCTTCCCC TCTGGGCTTCCCTACTGACTGGGGCCTGGCCATCCTTCCCC < 41bp 0.530226621697742 0.733325951876965 NA NA prediction 0.406198660358445 Functional Gain - SEMA3F ENSG00000001617 CDS Human protein_coding chr3:50197098 chr3:50197097 synonymous SNV . 0 20 hm7G_associated_SNPs_35226 0 0 1 0 2 SEMA3F chr3:50197167 5'GT 50197167 Upstream 71bp 32410 chr4 3451018 3451018 1 + G A GBM 3451019 + 3450999 3451039 41 CGGCGTGGCTTACCTCTACGGCATCATCAGCTGGGGTGACG CGGCGTGGCTTACCTCTACAGCATCATCAGCTGGGGTGACG < 41bp 0.579291896967385 0.782389457245458 NA NA prediction 0.406195120556147 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3451019 chr4:3451018 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_35227 0 0 1 0 1 HGFAC chr4:3450964 3'AG 3450964 Downstream 55bp 32411 chr5 167719269 167719269 1 + C T COAD 167719270 + 167719250 167719290 41 CACCAGCTGGATCGACCCGCGGGACAGGTAGGACCCTGGAA CACCAGCTGGATCGACCCGTGGGACAGGTAGGACCCTGGAA < 41bp 0.521606901009922 0.724703648764057 NA NA prediction 0.40619349550827 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167719270 chr5:167719269 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35230 0 0 0 0 1 WWC1 chr5:167719276 5'GT 167719276 Upstream 8bp 32412 chr1 183498596 183498596 1 + C T STAD 183498597 + 183498577 183498617 41 AGGCCTTTATTAAATTCCACGGTCATGTGTACCTGAGTAAG AGGCCTTTATTAAATTCCATGGTCATGTGTACCTGAGTAAG < 41bp 0.542888468889474 0.745979989371228 NA NA prediction 0.40618304096351 Functional Gain - SMG7 ENSG00000116698 CDS Human protein_coding chr1:183498597 chr1:183498596 synonymous SNV . 0 20 hm7G_associated_SNPs_35235 0 0 1 0 2 SMG7 chr1:183498533 3'AG 183498533 Downstream 64bp 32413 chr1 183498596 183498596 1 + C T STAD 183498597 + 183498577 183498617 41 AGGCCTTTATTAAATTCCACGGTCATGTGTACCTGAGTAAG AGGCCTTTATTAAATTCCATGGTCATGTGTACCTGAGTAAG < 41bp 0.542888468889474 0.745979989371228 NA NA prediction 0.40618304096351 Functional Gain - SMG7 ENSG00000116698 CDS Human protein_coding chr1:183498597 chr1:183498596 synonymous SNV . 0 20 hm7G_associated_SNPs_35235 0 0 1 0 2 SMG7 chr1:183498668 5'GT 183498668 Upstream 73bp 32414 chr19 14024278 14024278 1 + C T UCEC 14024279 + 14024259 14024299 41 ATTGACGAAGCGGACATCCCGCCGCCAGTGGCCATAGGAAA ATTGACGAAGCGGACATCCTGCCGCCAGTGGCCATAGGAAA < 41bp 0.536944459442878 0.740035490285071 NA NA prediction 0.406182061684385 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024279 chr19:14024278 nonsynonymous SNV 0.163 4 20 hm7G_associated_SNPs_35236 0 0 1 0 1 CC2D1A chr19:14024217 3'AG 14024217 Downstream 62bp 32415 chr1 4832549 4832549 1 + C T BLCA 4832550 + 4832530 4832570 41 GATGAGACGCTGCACTCGACGACGGGGGAGTACAAATCCAC GATGAGACGCTGCACTCGATGACGGGGGAGTACAAATCCAC < 41bp 0.535685942478905 0.738775335188488 NA NA prediction 0.406178785419165 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4832550 chr1:4832549 nonsynonymous SNV 0.173 2 20 hm7G_associated_SNPs_35238 0 0 0 0 1 AJAP1 chr1:4832585 5'GT 4832585 Upstream 37bp 32416 chr17 7317742 7317742 1 + C T GBM 7317743 + 7317723 7317763 41 AGGGGACCGGAAACATGTTCGATGGCTCAGTCCTGGCTGCC AGGGGACCGGAAACATGTTTGATGGCTCAGTCCTGGCTGCC < 41bp 0.553928851795078 0.757016629893828 NA NA prediction 0.406175556197501 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7317743 chr17:7317742 synonymous SNV . 0 20 hm7G_associated_SNPs_35240 0 0 1 0 2 NLGN2 chr17:7317663 3'AG 7317663 Downstream 80bp 32417 chr17 7317742 7317742 1 + C T GBM 7317743 + 7317723 7317763 41 AGGGGACCGGAAACATGTTCGATGGCTCAGTCCTGGCTGCC AGGGGACCGGAAACATGTTTGATGGCTCAGTCCTGGCTGCC < 41bp 0.553928851795078 0.757016629893828 NA NA prediction 0.406175556197501 Functional Gain - NLGN2 ENSG00000169992 CDS Human protein_coding chr17:7317743 chr17:7317742 synonymous SNV . 0 20 hm7G_associated_SNPs_35240 0 0 1 0 2 NLGN2 chr17:7317812 5'GT 7317812 Upstream 71bp 32418 chr2 206590675 206590675 1 + C T PAAD 206590676 + 206590656 206590696 41 TCTGGGCATGGAGTCTGGCCGGATTGCTAATGAACAGATCA TCTGGGCATGGAGTCTGGCTGGATTGCTAATGAACAGATCA < 41bp 0.540761546218103 0.743846069118529 NA NA prediction 0.406169045800853 Functional Gain - NRP2 ENSG00000118257 CDS Human protein_coding chr2:206590676 chr2:206590675 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_35243 0 0 1 0 1 NRP2 chr2:206590637 3'AG 206590637 Downstream 39bp 32419 chr11 993307 993307 1 + C T STAD 993308 + 993288 993328 41 TTCAGGCTCCCGCGTGCCACGAGAACCTGGTCAAAGTGGGC TTCAGGCTCCCGCGTGCCATGAGAACCTGGTCAAAGTGGGC < 41bp 0.53937140974001 0.742455594449143 NA NA prediction 0.406168369418267 Functional Gain - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993308 chr11:993307 synonymous SNV . 0 20 hm7G_associated_SNPs_35244 0 0 1 0 2 AP2A2 chr11:993284 3'AG 993284 Downstream 24bp 32420 chr11 993307 993307 1 + C T STAD 993308 + 993288 993328 41 TTCAGGCTCCCGCGTGCCACGAGAACCTGGTCAAAGTGGGC TTCAGGCTCCCGCGTGCCATGAGAACCTGGTCAAAGTGGGC < 41bp 0.53937140974001 0.742455594449143 NA NA prediction 0.406168369418267 Functional Gain - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:993308 chr11:993307 synonymous SNV . 0 20 hm7G_associated_SNPs_35244 0 0 1 0 2 AP2A2 chr11:993381 5'GT 993381 Upstream 75bp 32421 chr19 16339600 16339600 1 + G A SARC 16339601 + 16339581 16339621 41 GCCAAAAGCCAGTTCAAGCGGCGGTCAACAGCCAACAACGT GCCAAAAGCCAGTTCAAGCAGCGGTCAACAGCCAACAACGT < 41bp 0.564276961720641 0.767361146092327 NA NA prediction 0.406168368743372 Functional Gain - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16339601 chr19:16339600 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_35245 0 0 1 0 1 AP1M1 chr19:16339581 3'AG 16339581 Downstream 20bp 32422 chr8 19231123 19231123 1 + C T UCEC 19231124 + 19231104 19231144 41 AGAGGAGCAGCTACCACTTCGAGCGGGCTACCAGAAAACCT AGAGGAGCAGCTACCACTTTGAGCGGGCTACCAGAAAACCT < 41bp 0.541655926069818 0.744738301317024 NA NA prediction 0.406164750494412 Functional Gain - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19231124 chr8:19231123 stopgain 0.103 0 20 hm7G_associated_SNPs_35248 0 0 0 0 2 SH2D4A chr8:19231041 3'AG 19231041 Downstream 83bp 32423 chr8 19231123 19231123 1 + C T UCEC 19231124 + 19231104 19231144 41 AGAGGAGCAGCTACCACTTCGAGCGGGCTACCAGAAAACCT AGAGGAGCAGCTACCACTTTGAGCGGGCTACCAGAAAACCT < 41bp 0.541655926069818 0.744738301317024 NA NA prediction 0.406164750494412 Functional Gain - SH2D4A ENSG00000104611 CDS Human protein_coding chr8:19231124 chr8:19231123 stopgain 0.103 0 20 hm7G_associated_SNPs_35248 0 0 0 0 2 SH2D4A chr8:19231171 5'GT 19231171 Upstream 49bp 32424 chr17 4712826 4712826 1 + G A COAD 4712827 + 4712807 4712847 41 GTCAGCTGTCCTTTATCCCGGACTTGGGCCGCAAAGGACTG GTCAGCTGTCCTTTATCCCAGACTTGGGCCGCAAAGGACTG < 41bp 0.490074074918242 0.703081365531451 NA NA prediction 0.406162731062903 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712827 chr17:4712826 synonymous SNV . 0 20 hm7G_associated_SNPs_35249 0 0 1 0 2 PLD2 chr17:4712788 3'AG 4712788 Downstream 39bp 32425 chr17 4712826 4712826 1 + G A COAD 4712827 + 4712807 4712847 41 GTCAGCTGTCCTTTATCCCGGACTTGGGCCGCAAAGGACTG GTCAGCTGTCCTTTATCCCAGACTTGGGCCGCAAAGGACTG < 41bp 0.490074074918242 0.703081365531451 NA NA prediction 0.406162731062903 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4712827 chr17:4712826 synonymous SNV . 0 20 hm7G_associated_SNPs_35249 0 0 1 0 2 PLD2 chr17:4712846 5'GT 4712846 Upstream 21bp 32426 chr11 46895129 46895129 1 - G A ESCA 46895128 - 46895108 46895148 41 CAAGGCGAGCAGACCTGAACGGCAGCAACATGGAGACAGTG CAAGGCGAGCAGACCTGAATGGCAGCAACATGGAGACAGTG < 41bp 0.525622233003927 0.728703031328671 NA NA prediction 0.406161596649489 Functional Gain - LRP4 ENSG00000134569 CDS Human protein_coding chr11:46895128 chr11:46895129 synonymous SNV . 0 20 hm7G_associated_SNPs_35250 0 0 1 0 1 LRP4 chr11:46895144 3'AG 46895144 Downstream 16bp 32427 chr4 8293275 8293275 1 + C T COAD 8293276 + 8293256 8293296 41 GACATGGACTACATCCAGACGGATGCCATCATCAACGTGAG GACATGGACTACATCCAGATGGATGCCATCATCAACGTGAG < 41bp 0.505965836468004 0.709045049295505 NA NA prediction 0.406158425655002 Functional Gain - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8293276 chr4:8293275 nonsynonymous SNV 0.951 5 20 hm7G_associated_SNPs_35252 0 0 0 0 1 HTRA3 chr4:8293291 5'GT 8293291 Upstream 17bp 32428 chr11 1081483 1081483 1 + C T rs72655308 1081484 + 1081464 1081504 41 GAGCATGGCCATTGGCGTCCGGCTGCAGGTGCAGCTGGCCC GAGCATGGCCATTGGCGTCTGGCTGCAGGTGCAGCTGGCCC < 41bp 0.510992026799669 0.714070348426223 NA NA prediction 0.406156643253107 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1081484 chr11:1081483 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_35254 0 0 0 0 1 MUC2 chr11:1081421 3'AG 1081421 Downstream 63bp 32429 chr11 68682320 68682320 1 + C T rs76707931 68682321 + 68682301 68682341 41 GCGCCCCCTCCAACATCGCCGTGGACAATCTGGTGGAGCGC GCGCCCCCTCCAACATCGCTGTGGACAATCTGGTGGAGCGC < 41bp 0.523314755912165 0.726392132444957 NA NA prediction 0.406154753065582 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68682321 chr11:68682320 synonymous SNV . 0 20 hm7G_associated_SNPs_35255 2 0 1 1 1 IGHMBP2 chr11:68682291 3'AG 68682291 Downstream 30bp 32430 chr12 121437335 121437335 1 + C T CESC 121437336 + 121437316 121437356 41 GAGTCCGGGCTTCACACGCCGGCATCTCAGGCCACCACCCT GAGTCCGGGCTTCACACGCTGGCATCTCAGGCCACCACCCT < 41bp 0.495213851329807 0.703077253019109 NA NA prediction 0.406154506038217 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437336 chr12:121437335 nonsynonymous SNV 0.100 2 20 hm7G_associated_SNPs_35256 0 0 0 0 3 HNF1A chr12:121437265 3'AG 121437265 Downstream 71bp 32431 chr12 121437335 121437335 1 + C T CESC 121437336 + 121437316 121437356 41 GAGTCCGGGCTTCACACGCCGGCATCTCAGGCCACCACCCT GAGTCCGGGCTTCACACGCTGGCATCTCAGGCCACCACCCT < 41bp 0.495213851329807 0.703077253019109 NA NA prediction 0.406154506038217 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437336 chr12:121437335 nonsynonymous SNV 0.100 2 20 hm7G_associated_SNPs_35256 0 0 0 0 3 HNF1A chr12:121437286 3'AG 121437286 Downstream 50bp 32432 chr12 121437335 121437335 1 + C T CESC 121437336 + 121437316 121437356 41 GAGTCCGGGCTTCACACGCCGGCATCTCAGGCCACCACCCT GAGTCCGGGCTTCACACGCTGGCATCTCAGGCCACCACCCT < 41bp 0.495213851329807 0.703077253019109 NA NA prediction 0.406154506038217 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121437336 chr12:121437335 nonsynonymous SNV 0.100 2 20 hm7G_associated_SNPs_35256 0 0 0 0 3 HNF1A chr12:121437430 5'GT 121437430 Upstream 96bp 32433 chr19 36352528 36352528 1 + C T rs188453521 36352529 + 36352509 36352549 41 GTCTGGTTTTCGCCTCTCCCGCCCCAGATGCCGTGGTAAGG GTCTGGTTTTCGCCTCTCCTGCCCCAGATGCCGTGGTAAGG < 41bp 0.535887841252355 0.738964946938393 NA NA prediction 0.406154211372076 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352529 chr19:36352528 synonymous SNV . 0 20 hm7G_associated_SNPs_35257 0 0 0 0 2 KIRREL2 chr19:36352443 3'AG 36352443 Downstream 86bp 32434 chr19 36352528 36352528 1 + C T rs188453521 36352529 + 36352509 36352549 41 GTCTGGTTTTCGCCTCTCCCGCCCCAGATGCCGTGGTAAGG GTCTGGTTTTCGCCTCTCCTGCCCCAGATGCCGTGGTAAGG < 41bp 0.535887841252355 0.738964946938393 NA NA prediction 0.406154211372076 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36352529 chr19:36352528 synonymous SNV . 0 20 hm7G_associated_SNPs_35257 0 0 0 0 2 KIRREL2 chr19:36352543 5'GT 36352543 Upstream 16bp 32435 chr4 8465768 8465768 1 + C T HNSC 8465769 + 8465749 8465789 41 CTGATGTTGATTGGTTAATCGGTAACCATTCTGATGAACTC CTGATGTTGATTGGTTAATTGGTAACCATTCTGATGAACTC < 41bp 0.556734330660273 0.759810276821927 NA NA prediction 0.406151892323308 Functional Gain - TRMT44 ENSG00000155275 CDS Human protein_coding chr4:8465769 chr4:8465768 synonymous SNV . 0 20 hm7G_associated_SNPs_35259 0 0 0 0 2 TRMT44 chr4:8465712 3'AG 8465712 Downstream 57bp 32436 chr4 8465768 8465768 1 + C T HNSC 8465769 + 8465749 8465789 41 CTGATGTTGATTGGTTAATCGGTAACCATTCTGATGAACTC CTGATGTTGATTGGTTAATTGGTAACCATTCTGATGAACTC < 41bp 0.556734330660273 0.759810276821927 NA NA prediction 0.406151892323308 Functional Gain - TRMT44 ENSG00000155275 CDS Human protein_coding chr4:8465769 chr4:8465768 synonymous SNV . 0 20 hm7G_associated_SNPs_35259 0 0 0 0 2 TRMT44 chr4:8465818 5'GT 8465818 Upstream 51bp 32437 chrX 48374169 48374169 1 + C T COAD 48374170 + 48374150 48374190 41 TGGTCACCTATGCAGCCAGCGCCCTCCTACATGTGAGCAGG TGGTCACCTATGCAGCCAGTGCCCTCCTACATGTGAGCAGG < 41bp 0.527414061420776 0.730489095639219 NA NA prediction 0.406150068436884 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48374170 chrX:48374169 synonymous SNV . 0 20 hm7G_associated_SNPs_35261 0 0 0 0 2 PORCN chrX:48374105 3'AG 48374105 Downstream 65bp 32438 chrX 48374169 48374169 1 + C T COAD 48374170 + 48374150 48374190 41 TGGTCACCTATGCAGCCAGCGCCCTCCTACATGTGAGCAGG TGGTCACCTATGCAGCCAGTGCCCTCCTACATGTGAGCAGG < 41bp 0.527414061420776 0.730489095639219 NA NA prediction 0.406150068436884 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48374170 chrX:48374169 synonymous SNV . 0 20 hm7G_associated_SNPs_35261 0 0 0 0 2 PORCN chrX:48374181 5'GT 48374181 Upstream 13bp 32439 chr16 11012339 11012339 1 + C T SKCM 11012340 + 11012320 11012360 41 ACCTGGGTGCCTACAAACTCGCCGAGGCCCTGCCTTCGCTC ACCTGGGTGCCTACAAACTTGCCGAGGCCCTGCCTTCGCTC < 41bp 0.53446910714136 0.737542473985329 NA NA prediction 0.406146733687937 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11012340 chr16:11012339 synonymous SNV . 0 20 hm7G_associated_SNPs_35264 0 0 0 0 2 CIITA chr16:11012297 3'AG 11012297 Downstream 43bp 32440 chr16 11012339 11012339 1 + C T SKCM 11012340 + 11012320 11012360 41 ACCTGGGTGCCTACAAACTCGCCGAGGCCCTGCCTTCGCTC ACCTGGGTGCCTACAAACTTGCCGAGGCCCTGCCTTCGCTC < 41bp 0.53446910714136 0.737542473985329 NA NA prediction 0.406146733687937 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:11012340 chr16:11012339 synonymous SNV . 0 20 hm7G_associated_SNPs_35264 0 0 0 0 2 CIITA chr16:11012383 5'GT 11012383 Upstream 45bp 32441 chr5 131602223 131602223 1 + C T COAD 131602224 + 131602204 131602244 41 AGGCACACAGGATCCACATCGATCCTGAGATCCAGGTATGT AGGCACACAGGATCCACATTGATCCTGAGATCCAGGTATGT < 41bp 0.521280102478516 0.724352219884608 NA NA prediction 0.406144234812183 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131602224 chr5:131602223 synonymous SNV . 0 20 hm7G_associated_SNPs_35265 0 0 1 0 2 PDLIM4 chr5:131602157 3'AG 131602157 Downstream 67bp 32442 chr5 131602223 131602223 1 + C T COAD 131602224 + 131602204 131602244 41 AGGCACACAGGATCCACATCGATCCTGAGATCCAGGTATGT AGGCACACAGGATCCACATTGATCCTGAGATCCAGGTATGT < 41bp 0.521280102478516 0.724352219884608 NA NA prediction 0.406144234812183 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131602224 chr5:131602223 synonymous SNV . 0 20 hm7G_associated_SNPs_35265 0 0 1 0 2 PDLIM4 chr5:131602238 5'GT 131602238 Upstream 16bp 32443 chr19 46177941 46177941 1 + C T UCEC 46177942 + 46177922 46177962 41 CCTTCCAAATTCCCCTAGGCGGCTACATTGCACTAGAAACT CCTTCCAAATTCCCCTAGGTGGCTACATTGCACTAGAAACT < 41bp 0.537337478046176 0.74040673252918 NA NA prediction 0.406138508966007 Functional Gain - GIPR ENSG00000010310 CDS Human protein_coding chr19:46177942 chr19:46177941 nonsynonymous SNV 0.810 3 20 hm7G_associated_SNPs_35269 0 0 0 6 1 GIPR chr19:46177940 3'AG 46177940 Downstream 2bp 32444 chr1 156142625 156142625 1 + G T THCA 156142626 + 156142606 156142646 41 TCCTCCTTTAGTGCTCAGTGGGCCCCTCCTCTGATAAGGCC TCCTCCTTTAGTGCTCAGTTGGCCCCTCCTCTGATAAGGCC < 41bp 0.343531714397856 0.703066660795113 NA NA prediction 0.406133321590225 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156142626 chr1:156142625 synonymous SNV . 0 20 hm7G_associated_SNPs_35270 0 0 0 0 1 SEMA4A chr1:156142617 3'AG 156142617 Downstream 9bp 32445 chr7 8095132 8095132 1 + C T HNSC 8095133 + 8095113 8095153 41 TCACAGTAAGGAGAAAGATCGCCAGTCACCTCTTCATGGCA TCACAGTAAGGAGAAAGATTGCCAGTCACCTCTTCATGGCA < 41bp 0.539987310422191 0.743053633472761 NA NA prediction 0.406132646101141 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8095133 chr7:8095132 nonsynonymous SNV 0.958 0 20 hm7G_associated_SNPs_35271 0 0 1 0 2 GLCCI1 chr7:8095063 3'AG 8095063 Downstream 70bp 32446 chr7 8095132 8095132 1 + C T HNSC 8095133 + 8095113 8095153 41 TCACAGTAAGGAGAAAGATCGCCAGTCACCTCTTCATGGCA TCACAGTAAGGAGAAAGATTGCCAGTCACCTCTTCATGGCA < 41bp 0.539987310422191 0.743053633472761 NA NA prediction 0.406132646101141 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8095133 chr7:8095132 nonsynonymous SNV 0.958 0 20 hm7G_associated_SNPs_35271 0 0 1 0 2 GLCCI1 chr7:8095179 5'GT 8095179 Upstream 48bp 32447 chr1 22924273 22924273 1 + C T COAD 22924274 + 22924254 22924294 41 CTACACGGAGAGACAGAGGCGGGACTTCCTGAGCGAGGCGT CTACACGGAGAGACAGAGGTGGGACTTCCTGAGCGAGGCGT < 41bp 0.556999583946412 0.76006322571895 NA NA prediction 0.406127283545075 Functional Gain - EPHA8 ENSG00000070886 CDS Human protein_coding chr1:22924274 chr1:22924273 nonsynonymous SNV 0.944 5 20 hm7G_associated_SNPs_35273 0 0 0 0 1 EPHA8 chr1:22924354 5'GT 22924354 Upstream 82bp 32448 chr2 61319641 61319641 1 + C T STAD 61319642 + 61319622 61319662 41 AGTATTTGAATAGTCTTTTCGAAGAATTAAAATCTTGGAGA AGTATTTGAATAGTCTTTTTGAAGAATTAAAATCTTGGAGA < 41bp 0.534308371695402 0.737363759802624 NA NA prediction 0.406110776214442 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61319642 chr2:61319641 synonymous SNV . 0 20 hm7G_associated_SNPs_35280 0 0 0 0 2 KIAA1841 chr2:61319599 3'AG 61319599 Downstream 43bp 32449 chr2 61319641 61319641 1 + C T STAD 61319642 + 61319622 61319662 41 AGTATTTGAATAGTCTTTTCGAAGAATTAAAATCTTGGAGA AGTATTTGAATAGTCTTTTTGAAGAATTAAAATCTTGGAGA < 41bp 0.534308371695402 0.737363759802624 NA NA prediction 0.406110776214442 Functional Gain - KIAA1841 ENSG00000162929 CDS Human protein_coding chr2:61319642 chr2:61319641 synonymous SNV . 0 20 hm7G_associated_SNPs_35280 0 0 0 0 2 KIAA1841 chr2:61319722 5'GT 61319722 Upstream 82bp 32450 chr3 183951090 183951090 1 + C T COAD 183951091 + 183951071 183951111 41 AGCTGCCCTCAAGGCCTGACGGGGTGCTGCATGTGGCCCTG AGCTGCCCTCAAGGCCTGATGGGGTGCTGCATGTGGCCCTG < 41bp 0.502810579100578 0.705865210769322 NA NA prediction 0.406109263337488 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183951091 chr3:183951090 synonymous SNV . 0 20 hm7G_associated_SNPs_35281 0 0 0 0 1 VWA5B2 chr3:183951185 5'GT 183951185 Upstream 96bp 32451 chrX 128710006 128710006 1 + C T UCEC 128710007 + 128709987 128710027 41 GTACTGCAAGCCATGGCTTCGGGCTGAACCTTTTGAGGGCT GTACTGCAAGCCATGGCTTTGGGCTGAACCTTTTGAGGGCT < 41bp 0.543453753694657 0.746506310325298 NA NA prediction 0.406105113261283 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128710007 chrX:128710006 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_35282 0 0 1 0 1 OCRL chrX:128710039 5'GT 128710039 Upstream 34bp 32452 chr9 101765754 101765754 1 + C T COAD 101765755 + 101765735 101765775 41 AATTTAGCAGCAACAGCAGCGGGGCTGGCCGAGGTGCCCAT AATTTAGCAGCAACAGCAGTGGGGCTGGCCGAGGTGCCCAT < 41bp 0.529720579476951 0.732772829399021 NA NA prediction 0.40610449984414 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101765755 chr9:101765754 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_35283 0 0 0 0 1 COL15A1 chr9:101765735 3'AG 101765735 Downstream 20bp 32453 chr9 131479201 131479201 1 + C T STAD 131479202 + 131479182 131479222 41 CTTCCCCGAGCCCCAGGCCCGGTGGGTTCCATCCCTCCTGC CTTCCCCGAGCCCCAGGCCTGGTGGGTTCCATCCCTCCTGC < 41bp 0.529865599817837 0.732916247145315 NA NA prediction 0.406101294654957 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131479202 chr9:131479201 nonsynonymous SNV 0.722 0 20 hm7G_associated_SNPs_35284 0 0 0 0 1 PKN3 chr9:131479202 5'GT 131479202 Upstream 2bp 32454 chr10 69905257 69905257 1 + C T UCEC 69905258 + 69905238 69905278 41 CTTCTTCTGACTCAGAAGGCGACCCTAACAAGGAAGAGATG CTTCTTCTGACTCAGAAGGTGACCCTAACAAGGAAGAGATG < 41bp 0.529490630677143 0.732541135978224 NA NA prediction 0.406101010602163 Functional Gain - MYPN ENSG00000138347 CDS Human protein_coding chr10:69905258 chr10:69905257 synonymous SNV . 0 20 hm7G_associated_SNPs_35285 3 0 1 0 2 MYPN chr10:69905232 3'AG 69905232 Downstream 26bp 32455 chr10 69905257 69905257 1 + C T UCEC 69905258 + 69905238 69905278 41 CTTCTTCTGACTCAGAAGGCGACCCTAACAAGGAAGAGATG CTTCTTCTGACTCAGAAGGTGACCCTAACAAGGAAGAGATG < 41bp 0.529490630677143 0.732541135978224 NA NA prediction 0.406101010602163 Functional Gain - MYPN ENSG00000138347 CDS Human protein_coding chr10:69905258 chr10:69905257 synonymous SNV . 0 20 hm7G_associated_SNPs_35285 3 0 1 0 2 MYPN chr10:69905283 5'GT 69905283 Upstream 27bp 32456 chr19 16884122 16884122 1 + G A rs146121969 16884123 + 16884103 16884143 41 CCTCCGGGCAACTCTCAGCGGCTGTCACAAAGGTGAGTCTC CCTCCGGGCAACTCTCAGCAGCTGTCACAAAGGTGAGTCTC < 41bp 0.485000821943192 0.703049588844821 NA NA prediction 0.406099177689642 Functional Gain - NWD1 ENSG00000188039 CDS Human protein_coding chr19:16884123 chr19:16884122 nonsynonymous SNV 0.265 2 20 hm7G_associated_SNPs_35287 0 0 0 0 1 NWD1 chr19:16884134 5'GT 16884134 Upstream 13bp 32457 chr17 18387230 18387230 1 + C T rs139241672 18387231 + 18387211 18387251 41 TCCAAGGGGGTCTCCAGGACGGATTTCAGATCACTGTCAAT TCCAAGGGGGTCTCCAGGATGGATTTCAGATCACTGTCAAT < 41bp 0.53726563568031 0.74031105555297 NA NA prediction 0.406090839745321 Functional Gain - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18387231 chr17:18387230 synonymous SNV . 0 20 hm7G_associated_SNPs_35289 0 0 0 0 2 LGALS9C chr17:18387189 3'AG 18387189 Downstream 42bp 32458 chr17 18387230 18387230 1 + C T rs139241672 18387231 + 18387211 18387251 41 TCCAAGGGGGTCTCCAGGACGGATTTCAGATCACTGTCAAT TCCAAGGGGGTCTCCAGGATGGATTTCAGATCACTGTCAAT < 41bp 0.53726563568031 0.74031105555297 NA NA prediction 0.406090839745321 Functional Gain - LGALS9C ENSG00000171916 CDS Human protein_coding chr17:18387231 chr17:18387230 synonymous SNV . 0 20 hm7G_associated_SNPs_35289 0 0 0 0 2 LGALS9C chr17:18387280 5'GT 18387280 Upstream 51bp 32459 chr6 148867262 148867262 1 + C T UCEC 148867263 + 148867243 148867283 41 GATCCGGGTGAAGCAGCTTCGGAAGCAGCACCGCATGGCGG GATCCGGGTGAAGCAGCTTTGGAAGCAGCACCGCATGGCGG < 41bp 0.55469624645909 0.757740959298801 NA NA prediction 0.406089425679423 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148867263 chr6:148867262 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35290 0 0 0 0 1 SASH1 chr6:148867282 5'GT 148867282 Upstream 21bp 32460 chr8 134225170 134225170 1 + C T STAD 134225171 + 134225151 134225191 41 ACTGGAGGACACCTCCTCACGCCCCCAATTCTGCAAGTGGC ACTGGAGGACACCTCCTCATGCCCCCAATTCTGCAAGTGGC < 41bp 0.527589469733138 0.730628753130438 NA NA prediction 0.4060785667946 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134225171 chr8:134225170 nonsynonymous SNV 0.362 3 20 hm7G_associated_SNPs_35296 0 0 0 0 1 WISP1 chr8:134225107 3'AG 134225107 Downstream 64bp 32461 chr11 10515007 10515007 1 + C T STAD 10515008 + 10514988 10515028 41 TGTGGCAGAGAAGCGGGGCCGGAAGATCACCCTGCGGCAGG TGTGGCAGAGAAGCGGGGCTGGAAGATCACCCTGCGGCAGG < 41bp 0.567597927648855 0.770637098386924 NA NA prediction 0.406078341476139 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10515008 chr11:10515007 nonsynonymous SNV 0.798 3 20 hm7G_associated_SNPs_35297 0 0 0 0 1 AMPD3 chr11:10515090 5'GT 10515090 Upstream 84bp 32462 chr1 167088559 167088559 1 + G A BRCA 167088560 + 167088540 167088580 41 GAATGCTGCGCATGGCACCGGCGTTTACACTGGCCCCGAAT GAATGCTGCGCATGGCACCAGCGTTTACACTGGCCCCGAAT < 41bp 0.479957256749384 0.703037655339331 NA NA prediction 0.406075310678661 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167088560 chr1:167088559 nonsynonymous SNV 0.738 4 20 hm7G_associated_SNPs_35298 0 0 0 0 1 DUSP27 chr1:167088486 3'AG 167088486 Downstream 74bp 32463 chr5 38904527 38904527 1 + C T STAD 38904528 + 38904508 38904548 41 TGCCACAGAGTACATGGCGCGAGTACGGTGTGCTGATGCCA TGCCACAGAGTACATGGCGTGAGTACGGTGTGCTGATGCCA < 41bp 0.536804380929818 0.739838818487443 NA NA prediction 0.406068875115248 Functional Gain - OSMR ENSG00000145623 CDS Human protein_coding chr5:38904528 chr5:38904527 stopgain 0.000 0 20 hm7G_associated_SNPs_35304 0 0 1 0 2 OSMR chr5:38904455 3'AG 38904455 Downstream 73bp 32464 chr5 38904527 38904527 1 + C T STAD 38904528 + 38904508 38904548 41 TGCCACAGAGTACATGGCGCGAGTACGGTGTGCTGATGCCA TGCCACAGAGTACATGGCGTGAGTACGGTGTGCTGATGCCA < 41bp 0.536804380929818 0.739838818487443 NA NA prediction 0.406068875115248 Functional Gain - OSMR ENSG00000145623 CDS Human protein_coding chr5:38904528 chr5:38904527 stopgain 0.000 0 20 hm7G_associated_SNPs_35304 0 0 1 0 2 OSMR chr5:38904605 5'GT 38904605 Upstream 79bp 32465 chr8 27309019 27309019 1 + C T UCEC 27309020 + 27309000 27309040 41 AGACGCCAGAGAAGGAGGTCGGCTACCGTGAGTGTTCCCGC AGACGCCAGAGAAGGAGGTTGGCTACCGTGAGTGTTCCCGC < 41bp 0.525680110258673 0.728713767328024 NA NA prediction 0.406067314138702 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27309020 chr8:27309019 synonymous SNV . 0 20 hm7G_associated_SNPs_35305 0 0 1 0 2 PTK2B chr8:27309002 3'AG 27309002 Downstream 18bp 32466 chr8 27309019 27309019 1 + C T UCEC 27309020 + 27309000 27309040 41 AGACGCCAGAGAAGGAGGTCGGCTACCGTGAGTGTTCCCGC AGACGCCAGAGAAGGAGGTTGGCTACCGTGAGTGTTCCCGC < 41bp 0.525680110258673 0.728713767328024 NA NA prediction 0.406067314138702 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27309020 chr8:27309019 synonymous SNV . 0 20 hm7G_associated_SNPs_35305 0 0 1 0 2 PTK2B chr8:27309026 5'GT 27309026 Upstream 8bp 32467 chr12 109936144 109936144 1 + C T UCEC 109936145 + 109936125 109936165 41 AGTTTAGAAGGATGCCATACGCTTTGTCTAATGGGTAAGTA AGTTTAGAAGGATGCCATATGCTTTGTCTAATGGGTAAGTA < 41bp 0.53428695277214 0.737318964973293 NA NA prediction 0.406064024402306 Functional Gain - UBE3B ENSG00000151148 CDS Human protein_coding chr12:109936145 chr12:109936144 nonsynonymous SNV 0.714 2 20 hm7G_associated_SNPs_35307 0 0 1 0 1 UBE3B chr12:109936158 5'GT 109936158 Upstream 15bp 32468 chr2 189449082 189449082 1 + C T CESC 189449083 + 189449063 189449103 41 CCAGTCTTCGATGCCTACTCGCAATGGCACACAGCCACCTC CCAGTCTTCGATGCCTACTTGCAATGGCACACAGCCACCTC < 41bp 0.501983612600408 0.705014656298712 NA NA prediction 0.406062087396609 Functional Gain - GULP1 ENSG00000144366 CDS Human protein_coding chr2:189449083 chr2:189449082 nonsynonymous SNV 0.876 2 20 hm7G_associated_SNPs_35308 0 0 0 0 2 GULP1 chr2:189448992 3'AG 189448992 Downstream 91bp 32469 chr2 189449082 189449082 1 + C T CESC 189449083 + 189449063 189449103 41 CCAGTCTTCGATGCCTACTCGCAATGGCACACAGCCACCTC CCAGTCTTCGATGCCTACTTGCAATGGCACACAGCCACCTC < 41bp 0.501983612600408 0.705014656298712 NA NA prediction 0.406062087396609 Functional Gain - GULP1 ENSG00000144366 CDS Human protein_coding chr2:189449083 chr2:189449082 nonsynonymous SNV 0.876 2 20 hm7G_associated_SNPs_35308 0 0 0 0 2 GULP1 chr2:189449130 5'GT 189449130 Upstream 49bp 32470 chr2 128389269 128389269 1 + G T LUAD 128389270 + 128389250 128389290 41 CACTGGCCCTGCAGCACCCGGCCCTCCAGGACGAGGTCTAC CACTGGCCCTGCAGCACCCTGCCCTCCAGGACGAGGTCTAC < 41bp 0.351840154790043 0.703026990708931 NA NA prediction 0.406053981417861 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128389270 chr2:128389269 synonymous SNV . 0 20 hm7G_associated_SNPs_35311 0 0 0 0 1 MYO7B chr2:128389328 5'GT 128389328 Upstream 60bp 32471 chr17 54559800 54559800 1 + C T rs146193202 54559801 + 54559781 54559821 41 TCCTGCTCCCTGCCTCAGACGACGTCTGTACAGCCCCAGGA TCCTGCTCCCTGCCTCAGATGACGTCTGTACAGCCCCAGGA < 41bp 0.496809880419147 0.703023837517286 NA NA prediction 0.406047675034573 Functional Gain - ANKFN1 ENSG00000153930 CDS Human protein_coding chr17:54559801 chr17:54559800 synonymous SNV . 0 20 hm7G_associated_SNPs_35312 0 0 0 0 1 ANKFN1 chr17:54559717 3'AG 54559717 Downstream 84bp 32472 chr22 50582666 50582666 1 + C T PRAD 50582667 + 50582647 50582687 41 TGAACGCCACCTGCAGGTTCGAGGAGGTGAGCCCTTGGTGC TGAACGCCACCTGCAGGTTTGAGGAGGTGAGCCCTTGGTGC < 41bp 0.50513424284723 0.708156377622212 NA NA prediction 0.406044269549964 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50582667 chr22:50582666 synonymous SNV . 0 20 hm7G_associated_SNPs_35313 0 0 0 0 1 MOV10L1 chr22:50582672 5'GT 50582672 Upstream 7bp 32473 chr11 47159253 47159253 1 + C T STAD 47159254 + 47159234 47159274 41 TTACTGTGTCCTGATTTCCCGCTGGAGCTCACTCAGAAAGC TTACTGTGTCCTGATTTCCTGCTGGAGCTCACTCAGAAAGC < 41bp 0.489288592594944 0.703020515481333 NA NA prediction 0.406041030962667 Functional Gain - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47159254 chr11:47159253 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_35316 0 0 1 0 2 C11orf49 chr11:47159196 3'AG 47159196 Downstream 58bp 32474 chr11 47159253 47159253 1 + C T STAD 47159254 + 47159234 47159274 41 TTACTGTGTCCTGATTTCCCGCTGGAGCTCACTCAGAAAGC TTACTGTGTCCTGATTTCCTGCTGGAGCTCACTCAGAAAGC < 41bp 0.489288592594944 0.703020515481333 NA NA prediction 0.406041030962667 Functional Gain - C11orf49 ENSG00000149179 CDS Human protein_coding chr11:47159254 chr11:47159253 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_35316 0 0 1 0 2 C11orf49 chr11:47159280 5'GT 47159280 Upstream 28bp 32475 chr1 55072914 55072914 1 + C T SKCM 55072915 + 55072895 55072935 41 GACTTCGTGATCCTGGCCTCGAGGCGGAAGCCTTGTGACAA GACTTCGTGATCCTGGCCTTGAGGCGGAAGCCTTGTGACAA < 41bp 0.529100304874282 0.732120609671478 NA NA prediction 0.406040609594392 Functional Gain - ACOT11 ENSG00000162390 CDS Human protein_coding chr1:55072915 chr1:55072914 nonsynonymous SNV 0.922 4 20 hm7G_associated_SNPs_35317 0 0 0 0 1 ACOT11 chr1:55072938 5'GT 55072938 Upstream 25bp 32476 chr3 13670511 13670511 1 + C T COAD 13670512 + 13670492 13670532 41 ACCCGCTGATCTGCGCGCGCGGCTACCACGCCAGCGATGAT ACCCGCTGATCTGCGCGCGTGGCTACCACGCCAGCGATGAT < 41bp 0.556172539242703 0.759192032561419 NA NA prediction 0.406038986637432 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13670512 chr3:13670511 synonymous SNV . 0 20 hm7G_associated_SNPs_35319 0 0 0 0 1 FBLN2 chr3:13670548 5'GT 13670548 Upstream 38bp 32477 chr5 118969707 118969707 1 + G A UCEC 118969708 + 118969688 118969728 41 CTCAATCACCCCTGGCCCAGGTTCAGGAACGAGGAGAGACT CTCAATCACCCCTGGCCCAAGTTCAGGAACGAGGAGAGACT < 41bp 0.486671433688094 0.703019422012612 NA NA prediction 0.406038844025224 Functional Gain - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118969708 chr5:118969707 synonymous SNV . 0 20 hm7G_associated_SNPs_35320 0 0 0 0 1 FAM170A chr5:118969655 3'AG 118969655 Downstream 53bp 32478 chr5 176710791 176710791 1 + C T UCEC 176710792 + 176710772 176710812 41 TCTTTTGGAATTCTAGGACCGAATCATTGATGCTGGTCCCA TCTTTTGGAATTCTAGGACTGAATCATTGATGCTGGTCCCA < 41bp 0.524297865645037 0.727314130289531 NA NA prediction 0.406032529288987 Functional Gain - NSD1 ENSG00000165671 CDS Human protein_coding chr5:176710792 chr5:176710791 stopgain 0.996 1 20 hm7G_associated_SNPs_35324 2 0 1 0 1 NSD1 chr5:176710788 3'AG 176710788 Downstream 4bp 32479 chr1 17552415 17552415 1 + C T UCEC 17552416 + 17552396 17552436 41 ACCCACAGCTGGCTGATGTCGCTGGCTGGTGAGTGACACAA ACCCACAGCTGGCTGATGTTGCTGGCTGGTGAGTGACACAA < 41bp 0.522147679889112 0.725163750884724 NA NA prediction 0.406032141991224 Functional Gain - PADI1 ENSG00000142623 CDS Human protein_coding chr1:17552416 chr1:17552415 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_35325 0 0 0 0 1 PADI1 chr1:17552423 5'GT 17552423 Upstream 9bp 32480 chr16 2121869 2121869 1 + C T rs45517208 2121870 + 2121850 2121890 41 GCCCGGCGCCTGCAGGCCCCGCCGTGCGGCTGGGGTCCGTG GCCCGGCGCCTGCAGGCCCTGCCGTGCGGCTGGGGTCCGTG < 41bp 0.508431876135684 0.711444992489855 NA NA prediction 0.406026232708343 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2121870 chr16:2121869 synonymous SNV . 0 20 hm7G_associated_SNPs_35326 4 0 1 0 2 TSC2 chr16:2121785 3'AG 2121785 Downstream 85bp 32481 chr16 2121869 2121869 1 + C T rs45517208 2121870 + 2121850 2121890 41 GCCCGGCGCCTGCAGGCCCCGCCGTGCGGCTGGGGTCCGTG GCCCGGCGCCTGCAGGCCCTGCCGTGCGGCTGGGGTCCGTG < 41bp 0.508431876135684 0.711444992489855 NA NA prediction 0.406026232708343 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2121870 chr16:2121869 synonymous SNV . 0 20 hm7G_associated_SNPs_35326 4 0 1 0 2 TSC2 chr16:2121935 5'GT 2121935 Upstream 67bp 32482 chr11 57117341 57117341 1 + C T ESCA 57117342 + 57117322 57117362 41 GGGGACGTGGTCAAGTTTGCGGGGCAGGATTTTGCCAAACT GGGGACGTGGTCAAGTTTGTGGGGCAGGATTTTGCCAAACT < 41bp 0.494943327856895 0.703012126647583 NA NA prediction 0.406024253295165 Functional Gain - P2RX3 ENSG00000109991 CDS Human protein_coding chr11:57117342 chr11:57117341 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_35328 0 0 0 0 1 P2RX3 chr11:57117372 5'GT 57117372 Upstream 32bp 32483 chrX 135288623 135288623 1 + G T LUAD 135288624 + 135288604 135288644 41 TTTGACTGCCACTACTGCAGGGATCCCTTGCAGGGGAAGAA TTTGACTGCCACTACTGCATGGATCCCTTGCAGGGGAAGAA < 41bp 0.702245993473711 0.905257825922001 NA NA prediction 0.40602366489658 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135288624 chrX:135288623 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_35329 0 0 1 0 2 FHL1 chrX:135288566 3'AG 135288566 Downstream 58bp 32484 chrX 135288623 135288623 1 + G T LUAD 135288624 + 135288604 135288644 41 TTTGACTGCCACTACTGCAGGGATCCCTTGCAGGGGAAGAA TTTGACTGCCACTACTGCATGGATCCCTTGCAGGGGAAGAA < 41bp 0.702245993473711 0.905257825922001 NA NA prediction 0.40602366489658 Functional Gain - FHL1 ENSG00000022267 CDS Human protein_coding chrX:135288624 chrX:135288623 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_35329 0 0 1 0 2 FHL1 chrX:135288692 5'GT 135288692 Upstream 70bp 32485 chr1 159162373 159162373 1 + C T LUSC 159162374 + 159162354 159162394 41 CTTGATTTCCCCAGCCCTTCGAGATAATCGAATTCAGCTGG CTTGATTTCCCCAGCCCTTTGAGATAATCGAATTCAGCTGG < 41bp 0.521455593208407 0.724467187229243 NA NA prediction 0.406023188041673 Functional Gain - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159162374 chr1:159162373 stopgain 0.999 1 20 hm7G_associated_SNPs_35330 0 0 0 0 1 CADM3 chr1:159162368 3'AG 159162368 Downstream 6bp 32486 chr17 7918680 7918680 1 + C T UCEC 7918681 + 7918661 7918701 41 GACGCCTATATGGTGGCCTCGGGGCTGCCCCAGCGGAATGG GACGCCTATATGGTGGCCTTGGGGCTGCCCCAGCGGAATGG < 41bp 0.535145974778004 0.738155085303845 NA NA prediction 0.406018221051681 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7918681 chr17:7918680 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_35332 0 0 0 0 1 GUCY2D chr17:7918646 3'AG 7918646 Downstream 35bp 32487 chr8 21883243 21883243 1 + C T COAD 21883244 + 21883224 21883264 41 GAGGACAAGAAGATGCAGCCGGTCACCATTGCCTCACTCCA GAGGACAAGAAGATGCAGCTGGTCACCATTGCCTCACTCCA < 41bp 0.55243097094487 0.755439411966555 NA NA prediction 0.40601688204337 Functional Gain - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21883244 chr8:21883243 nonsynonymous SNV 0.024 2 20 hm7G_associated_SNPs_35333 0 0 0 0 2 NPM2 chr8:21883158 3'AG 21883158 Downstream 86bp 32488 chr8 21883243 21883243 1 + C T COAD 21883244 + 21883224 21883264 41 GAGGACAAGAAGATGCAGCCGGTCACCATTGCCTCACTCCA GAGGACAAGAAGATGCAGCTGGTCACCATTGCCTCACTCCA < 41bp 0.55243097094487 0.755439411966555 NA NA prediction 0.40601688204337 Functional Gain - NPM2 ENSG00000158806 CDS Human protein_coding chr8:21883244 chr8:21883243 nonsynonymous SNV 0.024 2 20 hm7G_associated_SNPs_35333 0 0 0 0 2 NPM2 chr8:21883283 5'GT 21883283 Upstream 41bp 32489 chr10 102763357 102763357 1 + C T rs141407617 102763358 + 102763338 102763378 41 GCCTAGCTTCATGGGTCCTCGGGCCACCGGGCTGTCTGGGA GCCTAGCTTCATGGGTCCTTGGGCCACCGGGCTGTCTGGGA < 41bp 0.492706085297337 0.703008172829167 NA NA prediction 0.406016345658334 Functional Gain - LZTS2 ENSG00000107816 CDS Human protein_coding chr10:102763358 chr10:102763357 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_35334 0 0 1 0 1 LZTS2 chr10:102763264 3'AG 102763264 Downstream 94bp 32490 chr16 67572683 67572683 1 + C T SKCM 67572684 + 67572664 67572704 41 CCGCCAAGGTGCCGCAGCCCGAGCGGCTGGACCTGGTGTAC CCGCCAAGGTGCCGCAGCCTGAGCGGCTGGACCTGGTGTAC < 41bp 0.507083291312532 0.71008627005706 NA NA prediction 0.406005957489056 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67572684 chr16:67572683 synonymous SNV . 0 20 hm7G_associated_SNPs_35337 0 0 1 0 1 RIPOR1 chr16:67572727 5'GT 67572727 Upstream 45bp 32491 chrX 24734570 24734570 1 + C T COAD 24734571 + 24734551 24734591 41 TTCTCTGTGCACACCGCCACGGTAAAGTGTGTAGAGATACC TTCTCTGTGCACACCGCCATGGTAAAGTGTGTAGAGATACC < 41bp 0.497453551853136 0.703002149397058 NA NA prediction 0.406004298794115 Functional Gain - POLA1 ENSG00000101868 CDS Human protein_coding chrX:24734571 chrX:24734570 nonsynonymous SNV 0.899 0 20 hm7G_associated_SNPs_35338 0 0 1 0 2 POLA1 chrX:24734479 3'AG 24734479 Downstream 92bp 32492 chrX 24734570 24734570 1 + C T COAD 24734571 + 24734551 24734591 41 TTCTCTGTGCACACCGCCACGGTAAAGTGTGTAGAGATACC TTCTCTGTGCACACCGCCATGGTAAAGTGTGTAGAGATACC < 41bp 0.497453551853136 0.703002149397058 NA NA prediction 0.406004298794115 Functional Gain - POLA1 ENSG00000101868 CDS Human protein_coding chrX:24734571 chrX:24734570 nonsynonymous SNV 0.899 0 20 hm7G_associated_SNPs_35338 0 0 1 0 2 POLA1 chrX:24734571 5'GT 24734571 Upstream 2bp 32493 chr6 43412601 43412601 1 + C T COAD 43412602 + 43412582 43412622 41 GAGAATAGCTCCCAGGAGGCGCAACCCTCCACCAGCCCAGC GAGAATAGCTCCCAGGAGGTGCAACCCTCCACCAGCCCAGC < 41bp 0.536730456926747 0.739731916738553 NA NA prediction 0.406002919623612 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43412602 chr6:43412601 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35341 0 0 0 0 2 ABCC10 chr6:43412526 3'AG 43412526 Downstream 76bp 32494 chr6 43412601 43412601 1 + C T COAD 43412602 + 43412582 43412622 41 GAGAATAGCTCCCAGGAGGCGCAACCCTCCACCAGCCCAGC GAGAATAGCTCCCAGGAGGTGCAACCCTCCACCAGCCCAGC < 41bp 0.536730456926747 0.739731916738553 NA NA prediction 0.406002919623612 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43412602 chr6:43412601 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35341 0 0 0 0 2 ABCC10 chr6:43412676 5'GT 43412676 Upstream 76bp 32495 chr4 160277270 160277270 1 + C T SKCM 160277271 + 160277251 160277291 41 ACGAGTCTGACCCGCGCCTCGCCCCCTATCAGTCCCAAGGG ACGAGTCTGACCCGCGCCTTGCCCCCTATCAGTCCCAAGGG < 41bp 0.49715987548979 0.702999216597932 NA NA prediction 0.405998433195865 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160277271 chr4:160277270 synonymous SNV . 0 20 hm7G_associated_SNPs_35342 0 0 0 0 1 RAPGEF2 chr4:160277310 5'GT 160277310 Upstream 41bp 32496 chr6 146678789 146678789 1 + C T STAD 146678790 + 146678770 146678810 41 GAACAAGAGTGGAGTGGTGCGGTCTGTGTGCAGTGAGCCTT GAACAAGAGTGGAGTGGTGTGGTCTGTGTGCAGTGAGCCTT < 41bp 0.52980226830785 0.732800523873112 NA NA prediction 0.405996511130523 Functional Gain - GRM1 ENSG00000152822 CDS Human protein_coding chr6:146678790 chr6:146678789 nonsynonymous SNV 0.991 5 20 hm7G_associated_SNPs_35343 0 0 0 0 1 GRM1 chr6:146678830 5'GT 146678830 Upstream 42bp 32497 chr8 70476322 70476322 1 + C T OV 70476323 + 70476303 70476343 41 AGGACGGATACAGCAGGAACGAAAAAACATCCGACCCAACA AGGACGGATACAGCAGGAATGAAAAAACATCCGACCCAACA < 41bp 0.540949933608519 0.743946675358185 NA NA prediction 0.405993483499333 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70476323 chr8:70476322 stopgain 1.000 1 20 hm7G_associated_SNPs_35346 0 0 0 0 1 SULF1 chr8:70476382 5'GT 70476382 Upstream 61bp 32498 chr7 73107983 73107983 1 + C T BRCA 73107984 + 73107964 73108004 41 TGCTTGTTTTCTGGGCCTTCGACCTTTATACCAGAGGTGAG TGCTTGTTTTCTGGGCCTTTGACCTTTATACCAGAGGTGAG < 41bp 0.487619473204203 0.702995839579545 NA NA prediction 0.40599167915909 Functional Gain - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73107984 chr7:73107983 nonsynonymous SNV 0.746 0 20 hm7G_associated_SNPs_35347 0 0 1 1 2 BUD23 chr7:73107954 3'AG 73107954 Downstream 30bp 32499 chr7 73107983 73107983 1 + C T BRCA 73107984 + 73107964 73108004 41 TGCTTGTTTTCTGGGCCTTCGACCTTTATACCAGAGGTGAG TGCTTGTTTTCTGGGCCTTTGACCTTTATACCAGAGGTGAG < 41bp 0.487619473204203 0.702995839579545 NA NA prediction 0.40599167915909 Functional Gain - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73107984 chr7:73107983 nonsynonymous SNV 0.746 0 20 hm7G_associated_SNPs_35347 0 0 1 1 2 BUD23 chr7:73107999 5'GT 73107999 Upstream 17bp 32500 chr3 182554145 182554145 1 + C T SKCM 182554146 + 182554126 182554166 41 ATAGGTGGGTGATATTGTTCGAATAGCCAAAGATGAAATTT ATAGGTGGGTGATATTGTTTGAATAGCCAAAGATGAAATTT < 41bp 0.500657700841712 0.703651354820145 NA NA prediction 0.405987307956865 Functional Gain - ATP11B ENSG00000058063 CDS Human protein_coding chr3:182554146 chr3:182554145 stopgain 1.000 1 20 hm7G_associated_SNPs_35350 0 0 1 0 1 ATP11B chr3:182554130 3'AG 182554130 Downstream 16bp 32501 chr2 106509528 106509528 1 + C T UCEC 106509529 + 106509509 106509549 41 TGTCTACTGCATTGGGCAGCGGCGCTTCCACACCATGGACG TGTCTACTGCATTGGGCAGTGGCGCTTCCACACCATGGACG < 41bp 0.53416505891172 0.73715806130037 NA NA prediction 0.4059860047773 Functional Gain - NCK2 ENSG00000071051 CDS Human protein_coding chr2:106509529 chr2:106509528 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35351 0 0 1 0 1 NCK2 chr2:106509438 3'AG 106509438 Downstream 91bp 32502 chr6 26463655 26463655 1 + C T STAD 26463656 + 26463636 26463676 41 GGCCTCTTCATGGTCACCACGGCTGTGATCATCAGAGACAA GGCCTCTTCATGGTCACCATGGCTGTGATCATCAGAGACAA < 41bp 0.532418284502769 0.735408039337147 NA NA prediction 0.405979509668757 Functional Gain - BTN2A1 ENSG00000112763 CDS Human protein_coding chr6:26463656 chr6:26463655 nonsynonymous SNV 0.359 0 20 hm7G_associated_SNPs_35353 0 0 0 0 1 BTN2A1 chr6:26463753 5'GT 26463753 Upstream 99bp 32503 chr12 660177 660177 1 + C T KIRP 660178 + 660158 660198 41 GGATGGGCTTCCTCTGCAGCGCTACCAGGGACTCCGGTTTG GGATGGGCTTCCTCTGCAGTGCTACCAGGGACTCCGGTTTG < 41bp 0.543022009498749 0.746010425045716 NA NA prediction 0.405976831093936 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:660178 chr12:660177 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_35355 0 0 1 0 2 B4GALNT3 chr12:660088 3'AG 660088 Downstream 90bp 32504 chr12 660177 660177 1 + C T KIRP 660178 + 660158 660198 41 GGATGGGCTTCCTCTGCAGCGCTACCAGGGACTCCGGTTTG GGATGGGCTTCCTCTGCAGTGCTACCAGGGACTCCGGTTTG < 41bp 0.543022009498749 0.746010425045716 NA NA prediction 0.405976831093936 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:660178 chr12:660177 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_35355 0 0 1 0 2 B4GALNT3 chr12:660197 5'GT 660197 Upstream 21bp 32505 chr19 36546049 36546049 1 + G T LUSC 36546050 + 36546030 36546070 41 GAGGAGACGGTGCAGAACCGGGTGAGAAGCTGCTCGCCATG GAGGAGACGGTGCAGAACCTGGTGAGAAGCTGCTCGCCATG < 41bp 0.373106004447491 0.702987803793142 NA NA prediction 0.405975607586284 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36546050 chr19:36546049 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_35356 0 0 1 0 1 WDR62 chr19:36546050 5'GT 36546050 Upstream 2bp 32506 chr22 30403307 30403307 1 + C T rs146523702 30403308 + 30403288 30403328 41 ACCTTTCTGACGTGGAGTTCGGTAAGGTGCTCCCTGGACCC ACCTTTCTGACGTGGAGTTTGGTAAGGTGCTCCCTGGACCC < 41bp 0.503267118355797 0.706254413317042 NA NA prediction 0.405974589922491 Functional Gain - MTMR3 ENSG00000100330 CDS Human protein_coding chr22:30403308 chr22:30403307 synonymous SNV . 0 20 hm7G_associated_SNPs_35357 0 0 0 0 1 MTMR3 chr22:30403308 5'GT 30403308 Upstream 2bp 32507 chr5 7816984 7816984 1 + C T KIRP 7816985 + 7816965 7817005 41 GTGTTTGTTCTCAGGAGCCCGAGCGGCAGTACATGCACATT GTGTTTGTTCTCAGGAGCCTGAGCGGCAGTACATGCACATT < 41bp 0.508645051601838 0.711631660395905 NA NA prediction 0.405973217588133 Functional Gain - ADCY2 ENSG00000078295 CDS Human protein_coding chr5:7816985 chr5:7816984 synonymous SNV . 0 20 hm7G_associated_SNPs_35358 0 0 0 0 1 ADCY2 chr5:7816979 3'AG 7816979 Downstream 6bp 32508 chr19 36218439 36218439 1 + C T COAD 36218440 + 36218420 36218460 41 GCTGGCGAGAGGCCCTGAGCGGGGCCCTCCAGGGGGGCCTG GCTGGCGAGAGGCCCTGAGTGGGGCCCTCCAGGGGGGCCTG < 41bp 0.497549740236331 0.702985297473114 NA NA prediction 0.405970594946229 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218440 chr19:36218439 synonymous SNV . 0 20 hm7G_associated_SNPs_35361 0 0 1 0 1 KMT2B chr19:36218523 5'GT 36218523 Upstream 85bp 32509 chr16 68877575 68877575 1 + C T HNSC 68877576 + 68877556 68877596 41 GGAGACATGCGGTCTGGATCGGATTTTGGAGGCATTGAAGC GGAGACATGCGGTCTGGATTGGATTTTGGAGGCATTGAAGC < 41bp 0.50224319895632 0.705227872670316 NA NA prediction 0.405969347427992 Functional Gain - TANGO6 ENSG00000103047 CDS Human protein_coding chr16:68877576 chr16:68877575 nonsynonymous SNV 0.283 2 20 hm7G_associated_SNPs_35362 0 0 1 0 1 TANGO6 chr16:68877614 5'GT 68877614 Upstream 40bp 32510 chr19 39395718 39395718 1 + G A CESC 39395719 + 39395699 39395739 41 ATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACATGGAC ATTTTCTTCTAGGCTTCTCAGCCGGCACTGAGTACATGGAC < 41bp 0.495121764321114 0.702984157203949 NA NA prediction 0.405968314407898 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395719 chr19:39395718 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_35363 0 0 1 0 3 NFKBIB chr19:39395655 3'AG 39395655 Downstream 64bp 32511 chr19 39395718 39395718 1 + G A CESC 39395719 + 39395699 39395739 41 ATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACATGGAC ATTTTCTTCTAGGCTTCTCAGCCGGCACTGAGTACATGGAC < 41bp 0.495121764321114 0.702984157203949 NA NA prediction 0.405968314407898 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395719 chr19:39395718 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_35363 0 0 1 0 3 NFKBIB chr19:39395711 3'AG 39395711 Downstream 8bp 32512 chr19 39395718 39395718 1 + G A CESC 39395719 + 39395699 39395739 41 ATTTTCTTCTAGGCTTCTCGGCCGGCACTGAGTACATGGAC ATTTTCTTCTAGGCTTCTCAGCCGGCACTGAGTACATGGAC < 41bp 0.495121764321114 0.702984157203949 NA NA prediction 0.405968314407898 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395719 chr19:39395718 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_35363 0 0 1 0 3 NFKBIB chr19:39395760 5'GT 39395760 Upstream 43bp 32513 chr22 50546632 50546632 1 + C T READ 50546633 + 50546613 50546653 41 GGCCTGGCACGTGGAGCAGCGAAGCCACCTCAGTGAAGCCA GGCCTGGCACGTGGAGCAGTGAAGCCACCTCAGTGAAGCCA < 41bp 0.550933953919856 0.753917636630694 NA NA prediction 0.405967365421677 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50546633 chr22:50546632 synonymous SNV . 0 20 hm7G_associated_SNPs_35364 0 0 0 0 2 MOV10L1 chr22:50546565 3'AG 50546565 Downstream 68bp 32514 chr22 50546632 50546632 1 + C T READ 50546633 + 50546613 50546653 41 GGCCTGGCACGTGGAGCAGCGAAGCCACCTCAGTGAAGCCA GGCCTGGCACGTGGAGCAGTGAAGCCACCTCAGTGAAGCCA < 41bp 0.550933953919856 0.753917636630694 NA NA prediction 0.405967365421677 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50546633 chr22:50546632 synonymous SNV . 0 20 hm7G_associated_SNPs_35364 0 0 0 0 2 MOV10L1 chr22:50546677 5'GT 50546677 Upstream 46bp 32515 chr1 22850916 22850916 1 + C T HNSC 22850917 + 22850897 22850937 41 TGAGCACGGAAACCCAGGCCGCAGCCTCACAGATGGCGCAG TGAGCACGGAAACCCAGGCTGCAGCCTCACAGATGGCGCAG < 41bp 0.542812444525367 0.745795615231365 NA NA prediction 0.405966341411996 Functional Gain - ZBTB40 ENSG00000184677 CDS Human protein_coding chr1:22850917 chr1:22850916 synonymous SNV . 0 20 hm7G_associated_SNPs_35366 0 0 0 0 1 ZBTB40 chr1:22850937 5'GT 22850937 Upstream 22bp 32516 chr7 24324890 24324890 1 + G A COAD 24324891 + 24324871 24324911 41 CAAGCGACTGGGGCTGTCCGGACTGACCCTCGCCCTGTCCC CAAGCGACTGGGGCTGTCCAGACTGACCCTCGCCCTGTCCC < 41bp 0.548355897554889 0.751338767432043 NA NA prediction 0.405965739754309 Functional Gain - NPY ENSG00000122585 CDS Human protein_coding chr7:24324891 chr7:24324890 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_35368 0 0 0 0 1 NPY chr7:24324860 3'AG 24324860 Downstream 31bp 32517 chr5 176070219 176070219 1 + C T COAD 176070220 + 176070200 176070240 41 CTGAGAGGGAAGGCCCGGACGGGGGGCCCCATGGAAGTCAA CTGAGAGGGAAGGCCCGGATGGGGGGCCCCATGGAAGTCAA < 41bp 0.538617933530283 0.741600094307824 NA NA prediction 0.405964321555083 Functional Gain - EIF4E1B ENSG00000175766 CDS Human protein_coding chr5:176070220 chr5:176070219 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_35369 0 0 0 0 1 EIF4E1B chr5:176070267 5'GT 176070267 Upstream 49bp 32518 chr12 130847342 130847342 1 + G T COAD 130847343 + 130847323 130847363 41 CTGCATATTTCAGGATAGAGGACAGGAGCTGGTAGATGGGC CTGCATATTTCAGGATAGATGACAGGAGCTGGTAGATGGGC < 41bp 0.701918635019235 0.904900680753964 NA NA prediction 0.405964091469458 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130847343 chr12:130847342 stopgain 0.749 1 20 hm7G_associated_SNPs_35370 0 0 0 0 2 PIWIL1 chr12:130847311 3'AG 130847311 Downstream 32bp 32519 chr12 130847342 130847342 1 + G T COAD 130847343 + 130847323 130847363 41 CTGCATATTTCAGGATAGAGGACAGGAGCTGGTAGATGGGC CTGCATATTTCAGGATAGATGACAGGAGCTGGTAGATGGGC < 41bp 0.701918635019235 0.904900680753964 NA NA prediction 0.405964091469458 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130847343 chr12:130847342 stopgain 0.749 1 20 hm7G_associated_SNPs_35370 0 0 0 0 2 PIWIL1 chr12:130847381 5'GT 130847381 Upstream 40bp 32520 chr6 160239671 160239671 1 + G A STAD 160239672 + 160239652 160239692 41 AAGTGAACCTCATCCGAGCGGGGGTCCCAAAGATCGTGAGT AAGTGAACCTCATCCGAGCAGGGGTCCCAAAGATCGTGAGT < 41bp 0.541770739296928 0.744748341563095 NA NA prediction 0.405955204532334 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160239672 chr6:160239671 synonymous SNV . 0 20 hm7G_associated_SNPs_35371 0 0 1 0 2 PNLDC1 chr6:160239587 3'AG 160239587 Downstream 85bp 32521 chr6 160239671 160239671 1 + G A STAD 160239672 + 160239652 160239692 41 AAGTGAACCTCATCCGAGCGGGGGTCCCAAAGATCGTGAGT AAGTGAACCTCATCCGAGCAGGGGTCCCAAAGATCGTGAGT < 41bp 0.541770739296928 0.744748341563095 NA NA prediction 0.405955204532334 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160239672 chr6:160239671 synonymous SNV . 0 20 hm7G_associated_SNPs_35371 0 0 1 0 2 PNLDC1 chr6:160239686 5'GT 160239686 Upstream 16bp 32522 chr6 35260353 35260353 1 + G A UCEC 35260354 + 35260334 35260374 41 AGAAGCCATACGTTTGCACGGTGCCAGGCTGCGGGAAACGC AGAAGCCATACGTTTGCACAGTGCCAGGCTGCGGGAAACGC < 41bp 0.533171010055581 0.736146093480033 NA NA prediction 0.405950166848904 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35260354 chr6:35260353 synonymous SNV . 0 20 hm7G_associated_SNPs_35373 0 0 1 0 1 ZNF76 chr6:35260331 3'AG 35260331 Downstream 23bp 32523 chr7 803534 803534 1 + G A rs145493813 803535 + 803515 803555 41 ATTGGTCCCCTCCTGGAGCGGGTGACCGCGTCGCACCTTGA ATTGGTCCCCTCCTGGAGCAGGTGACCGCGTCGCACCTTGA < 41bp 0.558892172402669 0.761863965207522 NA NA prediction 0.405943585609706 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:803535 chr7:803534 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_35375 0 0 1 0 1 DNAAF5 chr7:803611 5'GT 803611 Upstream 78bp 32524 chr19 43920549 43920549 1 + C T COAD 43920550 + 43920530 43920570 41 GAGACAGCCATTTTGGCCACGAAGGGCTGCATCCCGGAAGG GAGACAGCCATTTTGGCCATGAAGGGCTGCATCCCGGAAGG < 41bp 0.507366925870337 0.710338243216124 NA NA prediction 0.405942634691574 Functional Gain - TEX101 ENSG00000131126 CDS Human protein_coding chr19:43920550 chr19:43920549 nonsynonymous SNV 0.146 0 20 hm7G_associated_SNPs_35376 0 0 0 0 1 TEX101 chr19:43920525 3'AG 43920525 Downstream 25bp 32525 chr5 150029852 150029852 1 + G A STAD 150029853 + 150029833 150029873 41 TTCTCTACCCGGAACGCCGGGATCGAGGCTCAGGTGTGGAA TTCTCTACCCGGAACGCCGAGATCGAGGCTCAGGTGTGGAA < 41bp 0.500177420109547 0.703146175973317 NA NA prediction 0.40593751172754 Functional Gain - SYNPO ENSG00000171992 CDS Human protein_coding chr5:150029853 chr5:150029852 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35378 0 0 0 0 1 SYNPO chr5:150029865 5'GT 150029865 Upstream 14bp 32526 chr11 61546883 61546883 1 + C T CESC 61546884 + 61546864 61546904 41 CTCAAGTCCACCGGCAGCTCGGGCGCCTTCAGGTAGGGGTG CTCAAGTCCACCGGCAGCTTGGGCGCCTTCAGGTAGGGGTG < 41bp 0.498232678732755 0.70296343646296 NA NA prediction 0.40592687292592 Functional Gain - MYRF ENSG00000124920 CDS Human protein_coding chr11:61546884 chr11:61546883 nonsynonymous SNV 0.605 1 20 hm7G_associated_SNPs_35381 0 0 1 0 1 MYRF chr11:61546895 5'GT 61546895 Upstream 13bp 32527 chr11 17653668 17653668 1 + C T SARC 17653669 + 17653649 17653689 41 ATTCTGTGAGCTGTGGATCCGGGACACCAAGTACGTGCAGC ATTCTGTGAGCTGTGGATCTGGGACACCAAGTACGTGCAGC < 41bp 0.544497445254717 0.747460238443651 NA NA prediction 0.405925586377867 Functional Gain - OTOG ENSG00000188162 CDS Human protein_coding chr11:17653669 chr11:17653668 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35382 1 0 0 0 1 OTOG chr11:17653635 3'AG 17653635 Downstream 34bp 32528 chr11 76885916 76885916 1 + C T UCEC 76885917 + 76885897 76885937 41 CTTCGTAGAGTTTGTGGAGCGGTACCGTGTGCTGCTGCCAG CTTCGTAGAGTTTGTGGAGTGGTACCGTGTGCTGCTGCCAG < 41bp 0.495741724606797 0.70296251480165 NA NA prediction 0.405925029603301 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76885917 chr11:76885916 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_35383 0 0 1 0 1 MYO7A chr11:76885960 5'GT 76885960 Upstream 45bp 32529 chr4 103527740 103527740 1 + C T COAD 103527741 + 103527721 103527761 41 CGACCTGAGCCTTCTGGACCGCTTGGGTAACTCTGTTTTGC CGACCTGAGCCTTCTGGACTGCTTGGGTAACTCTGTTTTGC < 41bp 0.554862532896735 0.757820860873847 NA NA prediction 0.405916655954224 Functional Gain - NFKB1 ENSG00000109320 CDS Human protein_coding chr4:103527741 chr4:103527740 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35385 0 0 1 0 1 NFKB1 chr4:103527653 3'AG 103527653 Downstream 88bp 32530 chr10 71007256 71007256 1 + C T UCEC 71007257 + 71007237 71007277 41 CTCTGTGCAGCAGCTCTGGCGGCCATCCTGACACGCCTCCG CTCTGTGCAGCAGCTCTGGTGGCCATCCTGACACGCCTCCG < 41bp 0.490513991639376 0.702958272729944 NA NA prediction 0.405916545459887 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71007257 chr10:71007256 nonsynonymous SNV 0.794 3 20 hm7G_associated_SNPs_35386 0 0 0 0 1 HKDC1 chr10:71007349 5'GT 71007349 Upstream 94bp 32531 chr19 35832795 35832795 1 + G A HNSC 35832796 + 35832776 35832816 41 CGGTGAAGGTCCAGCACTCGGGTGCCTACTGGTGCCAGGGG CGGTGAAGGTCCAGCACTCAGGTGCCTACTGGTGCCAGGGG < 41bp 0.57763150275731 0.780588679172239 NA NA prediction 0.405914352829859 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35832796 chr19:35832795 synonymous SNV . 0 20 hm7G_associated_SNPs_35388 0 0 0 0 1 CD22 chr19:35832868 5'GT 35832868 Upstream 74bp 32532 chr19 39589193 39589193 1 + C T COAD 39589194 + 39589174 39589214 41 GTCGGGGCCCCTGCCCCTCCGCGCCCAGGGCACCTTCGTCC GTCGGGGCCCCTGCCCCTCTGCGCCCAGGGCACCTTCGTCC < 41bp 0.496502767529458 0.702955662547207 NA NA prediction 0.405911325094414 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39589194 chr19:39589193 nonsynonymous SNV 0.004 3 20 hm7G_associated_SNPs_35390 0 0 0 0 1 ACP7 chr19:39589098 3'AG 39589098 Downstream 96bp 32533 chr6 37440230 37440230 1 + C T rs184294201 37440231 + 37440211 37440251 41 GTGTGGCTCCTTCTTCCTCCGACCCTAAATCGAAGTTCTTT GTGTGGCTCCTTCTTCCTCTGACCCTAAATCGAAGTTCTTT < 41bp 0.542535072074769 0.745489295634826 NA NA prediction 0.405908447120113 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37440231 chr6:37440230 synonymous SNV . 0 20 hm7G_associated_SNPs_35391 0 0 1 0 2 CMTR1 chr6:37440195 3'AG 37440195 Downstream 36bp 32534 chr6 37440230 37440230 1 + C T rs184294201 37440231 + 37440211 37440251 41 GTGTGGCTCCTTCTTCCTCCGACCCTAAATCGAAGTTCTTT GTGTGGCTCCTTCTTCCTCTGACCCTAAATCGAAGTTCTTT < 41bp 0.542535072074769 0.745489295634826 NA NA prediction 0.405908447120113 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37440231 chr6:37440230 synonymous SNV . 0 20 hm7G_associated_SNPs_35391 0 0 1 0 2 CMTR1 chr6:37440263 5'GT 37440263 Upstream 34bp 32535 chr19 36351891 36351891 1 + G A GBM 36351892 + 36351872 36351912 41 CTTCAGCTGCGCCTGGCGCGGGAACCCGCTTCCACGGGTAA CTTCAGCTGCGCCTGGCGCAGGAACCCGCTTCCACGGGTAA < 41bp 0.478832031407878 0.702951860056844 NA NA prediction 0.405903720113687 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351892 chr19:36351891 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35392 0 0 0 0 2 KIRREL2 chr19:36351811 3'AG 36351811 Downstream 81bp 32536 chr19 36351891 36351891 1 + G A GBM 36351892 + 36351872 36351912 41 CTTCAGCTGCGCCTGGCGCGGGAACCCGCTTCCACGGGTAA CTTCAGCTGCGCCTGGCGCAGGAACCCGCTTCCACGGGTAA < 41bp 0.478832031407878 0.702951860056844 NA NA prediction 0.405903720113687 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351892 chr19:36351891 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35392 0 0 0 0 2 KIRREL2 chr19:36351938 5'GT 36351938 Upstream 48bp 32537 chr11 66249741 66249741 1 + C T STAD 66249742 + 66249722 66249762 41 GGACTGCCGTGAGGCCTTCCGCCTGCTGTCACCCACAGAGC GGACTGCCGTGAGGCCTTCTGCCTGCTGTCACCCACAGAGC < 41bp 0.532470295970461 0.735420351602466 NA NA prediction 0.405900111264011 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249742 chr11:66249741 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_35394 0 0 1 0 2 DPP3 chr11:66249664 3'AG 66249664 Downstream 78bp 32538 chr11 66249741 66249741 1 + C T STAD 66249742 + 66249722 66249762 41 GGACTGCCGTGAGGCCTTCCGCCTGCTGTCACCCACAGAGC GGACTGCCGTGAGGCCTTCTGCCTGCTGTCACCCACAGAGC < 41bp 0.532470295970461 0.735420351602466 NA NA prediction 0.405900111264011 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66249742 chr11:66249741 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_35394 0 0 1 0 2 DPP3 chr11:66249667 3'AG 66249667 Downstream 75bp 32539 chr1 18702856 18702856 1 + G A SKCM 18702857 + 18702837 18702877 41 CCAGCAGAGCCCGGGTAGGGGACACAGTGAGGATTCTGGTC CCAGCAGAGCCCGGGTAGGAGACACAGTGAGGATTCTGGTC < 41bp 0.523475167991037 0.726425020411218 NA NA prediction 0.405899704840363 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18702857 chr1:18702856 synonymous SNV . 0 20 hm7G_associated_SNPs_35395 0 0 0 0 2 IGSF21 chr1:18702804 3'AG 18702804 Downstream 53bp 32540 chr1 18702856 18702856 1 + G A SKCM 18702857 + 18702837 18702877 41 CCAGCAGAGCCCGGGTAGGGGACACAGTGAGGATTCTGGTC CCAGCAGAGCCCGGGTAGGAGACACAGTGAGGATTCTGGTC < 41bp 0.523475167991037 0.726425020411218 NA NA prediction 0.405899704840363 Functional Gain - IGSF21 ENSG00000117154 CDS Human protein_coding chr1:18702857 chr1:18702856 synonymous SNV . 0 20 hm7G_associated_SNPs_35395 0 0 0 0 2 IGSF21 chr1:18702889 5'GT 18702889 Upstream 34bp 32541 chr1 109325117 109325117 1 + C T UCEC 109325118 + 109325098 109325138 41 CTGGGTTAGAATTCGACATCGACATATTGCGGTTGTGTTAG CTGGGTTAGAATTCGACATTGACATATTGCGGTTGTGTTAG < 41bp 0.514449291885327 0.717399047287791 NA NA prediction 0.405899510804926 Functional Gain - STXBP3 ENSG00000116266 CDS Human protein_coding chr1:109325118 chr1:109325117 stopgain 0.984 1 20 hm7G_associated_SNPs_35396 0 0 1 0 1 STXBP3 chr1:109325044 3'AG 109325044 Downstream 74bp 32542 chr3 73113194 73113194 1 + C T UCEC 73113195 + 73113175 73113215 41 GACACCCAGGCCACTTAATCGACCAAAGGTTTCTTTGTCAG GACACCCAGGCCACTTAATTGACCAAAGGTTTCTTTGTCAG < 41bp 0.525995636410035 0.728944281515484 NA NA prediction 0.405897290210897 Functional Gain - PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73113195 chr3:73113194 stopgain 0.999 1 20 hm7G_associated_SNPs_35397 0 0 1 0 1 PPP4R2 chr3:73113154 3'AG 73113154 Downstream 41bp 32543 chr6 36099050 36099050 1 + C T rs55776345 36099051 + 36099031 36099071 41 CGGCCTGTGCCCGACAGCTCGGCCATCGACAAGCGGTCAGG CGGCCTGTGCCCGACAGCTTGGCCATCGACAAGCGGTCAGG < 41bp 0.529824206072681 0.732771700444706 NA NA prediction 0.405894988744051 Functional Gain - MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36099051 chr6:36099050 nonsynonymous SNV 0.401 3 20 hm7G_associated_SNPs_35398 0 0 1 0 1 MAPK13 chr6:36099048 3'AG 36099048 Downstream 3bp 32544 chr4 144354858 144354858 1 + C T CESC 144354859 + 144354839 144354879 41 ACTGTCAAAGCAAGAAGCCCGAACCCACCAGGTAAATTATA ACTGTCAAAGCAAGAAGCCTGAACCCACCAGGTAAATTATA < 41bp 0.533621997903872 0.736568508026719 NA NA prediction 0.405893020245693 Functional Gain - GAB1 ENSG00000109458 CDS Human protein_coding chr4:144354859 chr4:144354858 synonymous SNV . 0 20 hm7G_associated_SNPs_35399 0 0 1 0 1 GAB1 chr4:144354869 5'GT 144354869 Upstream 12bp 32545 chr17 72249936 72249936 1 + C T UCEC 72249937 + 72249917 72249957 41 GGAACCCACGCTACGAGAACGTGCCACTAATCGGGAGAGCC GGAACCCACGCTACGAGAATGTGCCACTAATCGGGAGAGCC < 41bp 0.519934587075683 0.722879391004066 NA NA prediction 0.405889607856765 Functional Gain - TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72249937 chr17:72249936 synonymous SNV . 0 20 hm7G_associated_SNPs_35400 0 0 1 0 2 TTYH2 chr17:72249894 3'AG 72249894 Downstream 43bp 32546 chr17 72249936 72249936 1 + C T UCEC 72249937 + 72249917 72249957 41 GGAACCCACGCTACGAGAACGTGCCACTAATCGGGAGAGCC GGAACCCACGCTACGAGAATGTGCCACTAATCGGGAGAGCC < 41bp 0.519934587075683 0.722879391004066 NA NA prediction 0.405889607856765 Functional Gain - TTYH2 ENSG00000141540 CDS Human protein_coding chr17:72249937 chr17:72249936 synonymous SNV . 0 20 hm7G_associated_SNPs_35400 0 0 1 0 2 TTYH2 chr17:72249972 5'GT 72249972 Upstream 37bp 32547 chr19 10406104 10406104 1 + G A rs35318566 10406105 + 10406085 10406125 41 TCACGTTGACCTGCCGCGCGGAGGCCTGGCCTCCAGCCCAG TCACGTTGACCTGCCGCGCAGAGGCCTGGCCTCCAGCCCAG < 41bp 0.481607286601208 0.702943261067311 NA NA prediction 0.405886522134621 Functional Gain - ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10406105 chr19:10406104 synonymous SNV . 0 20 hm7G_associated_SNPs_35401 0 0 1 0 1 ICAM5 chr19:10406022 3'AG 10406022 Downstream 83bp 32548 chr10 70426934 70426934 1 + C T LUSC 70426935 + 70426915 70426955 41 CCCTCTTCCAATGGCCGACCGGCTATACACAGAGCTCACAG CCCTCTTCCAATGGCCGACTGGCTATACACAGAGCTCACAG < 41bp 0.530019962884714 0.732962646208428 NA NA prediction 0.405885366647429 Functional Gain - TET1 ENSG00000138336 CDS Human protein_coding chr10:70426935 chr10:70426934 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_35402 0 0 1 0 1 TET1 chr10:70427013 5'GT 70427013 Upstream 80bp 32549 chr11 2594162 2594162 1 + C T HNSC 2594163 + 2594143 2594183 41 CTGAGAAGGACGCGGTGAACGAGTCAGGCCGCGTGGAGTTC CTGAGAAGGACGCGGTGAATGAGTCAGGCCGCGTGGAGTTC < 41bp 0.518916200250741 0.721857795493827 NA NA prediction 0.405883190486171 Functional Gain - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2594163 chr11:2594162 synonymous SNV . 0 20 hm7G_associated_SNPs_35404 0 0 0 0 2 KCNQ1 chr11:2594076 3'AG 2594076 Downstream 87bp 32550 chr11 2594162 2594162 1 + C T HNSC 2594163 + 2594143 2594183 41 CTGAGAAGGACGCGGTGAACGAGTCAGGCCGCGTGGAGTTC CTGAGAAGGACGCGGTGAATGAGTCAGGCCGCGTGGAGTTC < 41bp 0.518916200250741 0.721857795493827 NA NA prediction 0.405883190486171 Functional Gain - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2594163 chr11:2594162 synonymous SNV . 0 20 hm7G_associated_SNPs_35404 0 0 0 0 2 KCNQ1 chr11:2594216 5'GT 2594216 Upstream 55bp 32551 chr9 2058342 2058342 1 + C T UCEC 2058343 + 2058323 2058363 41 AGATTTTAAGGAATATCATCGGTCTGTGGCCGGAAAGATCC AGATTTTAAGGAATATCATTGGTCTGTGGCCGGAAAGATCC < 41bp 0.533299649601053 0.736239577366396 NA NA prediction 0.405879855530686 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2058343 chr9:2058342 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35405 0 0 1 0 1 SMARCA2 chr9:2058291 3'AG 2058291 Downstream 52bp 32552 chr12 8906506 8906506 1 + C T COAD 8906507 + 8906487 8906527 41 TAAAGCTGTTTTCTTGGCTCGAGATAAGCACCATTTGGCTG TAAAGCTGTTTTCTTGGCTTGAGATAAGCACCATTTGGCTG < 41bp 0.523721489423742 0.726660976527466 NA NA prediction 0.405878974207448 Functional Gain - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8906507 chr12:8906506 stopgain 1.000 0 20 hm7G_associated_SNPs_35406 0 0 0 1 1 RIMKLB chr12:8906486 3'AG 8906486 Downstream 21bp 32553 chr6 43008795 43008795 1 - G A GBM 43008794 - 43008774 43008814 41 GGTGAGTGAGCAGTTCGCCCGGCACATTGACCAGCAGATCC GGTGAGTGAGCAGTTCGCCTGGCACATTGACCAGCAGATCC < 41bp 0.542282586017168 0.745220961935259 NA NA prediction 0.405876751836182 Functional Gain - CUL7 ENSG00000044090 CDS Human protein_coding chr6:43008794 chr6:43008795 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35407 0 0 1 0 1 CUL7 chr6:43008813 3'AG 43008813 Downstream 19bp 32554 chr2 32983521 32983521 1 + C T UCEC 32983522 + 32983502 32983542 41 CAAAGCCCTCCTTCATCTTCGGAACAAGGAGTTTCAAGAGT CAAAGCCCTCCTTCATCTTTGGAACAAGGAGTTTCAAGAGT < 41bp 0.538081410667139 0.741019735442424 NA NA prediction 0.405876649550569 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32983522 chr2:32983521 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_35408 0 0 0 0 1 TTC27 chr2:32983586 5'GT 32983586 Upstream 66bp 32555 chr5 176004522 176004522 1 + G A SKCM 176004523 + 176004503 176004543 41 TGAGAGTATCCGCGCTGGTGGACTACGAGAGGCAGACGGCG TGAGAGTATCCGCGCTGGTAGACTACGAGAGGCAGACGGCG < 41bp 0.561906744906507 0.764843762293472 NA NA prediction 0.40587403477393 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176004523 chr5:176004522 synonymous SNV . 0 20 hm7G_associated_SNPs_35412 0 0 1 0 1 CDHR2 chr5:176004555 5'GT 176004555 Upstream 34bp 32556 chr16 30198142 30198142 1 + G A SKCM 30198143 + 30198123 30198163 41 CCCCTCCTCTGCAGGTGTGGGAGATCCCAGATGGGGGCCTG CCCCTCCTCTGCAGGTGTGAGAGATCCCAGATGGGGGCCTG < 41bp 0.503612574069898 0.706548180816012 NA NA prediction 0.405871213492229 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198143 chr16:30198142 stopgain 1.000 1 20 hm7G_associated_SNPs_35413 0 0 0 0 1 CORO1A chr16:30198137 3'AG 30198137 Downstream 6bp 32557 chr19 18119848 18119848 1 + G A UCEC 18119849 + 18119829 18119869 41 ATCAAGGCCACCCTGCACCGGCCCTGGGTCCCAGCACGCCG ATCAAGGCCACCCTGCACCAGCCCTGGGTCCCAGCACGCCG < 41bp 0.596979365345635 0.799913288752089 NA NA prediction 0.405867846812908 Functional Gain - ARRDC2 ENSG00000105643 CDS Human protein_coding chr19:18119849 chr19:18119848 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35415 0 0 1 0 2 ARRDC2 chr19:18119780 3'AG 18119780 Downstream 69bp 32558 chr19 18119848 18119848 1 + G A UCEC 18119849 + 18119829 18119869 41 ATCAAGGCCACCCTGCACCGGCCCTGGGTCCCAGCACGCCG ATCAAGGCCACCCTGCACCAGCCCTGGGTCCCAGCACGCCG < 41bp 0.596979365345635 0.799913288752089 NA NA prediction 0.405867846812908 Functional Gain - ARRDC2 ENSG00000105643 CDS Human protein_coding chr19:18119849 chr19:18119848 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35415 0 0 1 0 2 ARRDC2 chr19:18119927 5'GT 18119927 Upstream 80bp 32559 chr5 156635917 156635917 1 + G A BRCA 156635918 + 156635898 156635938 41 AGAAGAAGCGCACGCTGAAGGGGTCCATTGAGCTCTCCCGA AGAAGAAGCGCACGCTGAAAGGGTCCATTGAGCTCTCCCGA < 41bp 0.534863179393419 0.7377951303414 NA NA prediction 0.405863901895963 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156635918 chr5:156635917 synonymous SNV . 0 20 hm7G_associated_SNPs_35416 0 0 0 0 2 ITK chr5:156635900 3'AG 156635900 Downstream 18bp 32560 chr5 156635917 156635917 1 + G A BRCA 156635918 + 156635898 156635938 41 AGAAGAAGCGCACGCTGAAGGGGTCCATTGAGCTCTCCCGA AGAAGAAGCGCACGCTGAAAGGGTCCATTGAGCTCTCCCGA < 41bp 0.534863179393419 0.7377951303414 NA NA prediction 0.405863901895963 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156635918 chr5:156635917 synonymous SNV . 0 20 hm7G_associated_SNPs_35416 0 0 0 0 2 ITK chr5:156636004 5'GT 156636004 Upstream 88bp 32561 chrX 153001897 153001897 1 + G T UCEC 153001898 + 153001878 153001918 41 AGAGGCCCAGGGAGCTAGAGGACGCTCAGGCGGGGTCTGGG AGAGGCCCAGGGAGCTAGATGACGCTCAGGCGGGGTCTGGG < 41bp 0.711435496659288 0.914366347302034 NA NA prediction 0.405861701285492 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153001898 chrX:153001897 nonsynonymous SNV 0.667 2 20 hm7G_associated_SNPs_35418 0 0 1 0 2 ABCD1 chrX:153001799 3'AG 153001799 Downstream 99bp 32562 chrX 153001897 153001897 1 + G T UCEC 153001898 + 153001878 153001918 41 AGAGGCCCAGGGAGCTAGAGGACGCTCAGGCGGGGTCTGGG AGAGGCCCAGGGAGCTAGATGACGCTCAGGCGGGGTCTGGG < 41bp 0.711435496659288 0.914366347302034 NA NA prediction 0.405861701285492 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153001898 chrX:153001897 nonsynonymous SNV 0.667 2 20 hm7G_associated_SNPs_35418 0 0 1 0 2 ABCD1 chrX:153001967 5'GT 153001967 Upstream 71bp 32563 chr9 101816901 101816901 1 + G T UCEC 101816902 + 101816882 101816922 41 GGGGTCTTCCTGGCTCAAAGGGAGAAAAAGGCGACCAGGGA GGGGTCTTCCTGGCTCAAATGGAGAAAAAGGCGACCAGGGA < 41bp 0.708749719029219 0.911679102507848 NA NA prediction 0.405858766957259 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101816902 chr9:101816901 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35420 0 0 0 0 2 COL15A1 chr9:101816858 3'AG 101816858 Downstream 44bp 32564 chr9 101816901 101816901 1 + G T UCEC 101816902 + 101816882 101816922 41 GGGGTCTTCCTGGCTCAAAGGGAGAAAAAGGCGACCAGGGA GGGGTCTTCCTGGCTCAAATGGAGAAAAAGGCGACCAGGGA < 41bp 0.708749719029219 0.911679102507848 NA NA prediction 0.405858766957259 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101816902 chr9:101816901 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35420 0 0 0 0 2 COL15A1 chr9:101816938 5'GT 101816938 Upstream 38bp 32565 chr19 40883791 40883791 1 + C T UCEC 40883792 + 40883772 40883812 41 CTGAACGCGCCACCTACATCGGTGAGTGTCTTGAGCACCAC CTGAACGCGCCACCTACATTGGTGAGTGTCTTGAGCACCAC < 41bp 0.518692958729324 0.721617825558874 NA NA prediction 0.405849733659101 Functional Gain - PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883792 chr19:40883791 synonymous SNV . 0 20 hm7G_associated_SNPs_35424 0 0 1 0 2 PLD3 chr19:40883693 3'AG 40883693 Downstream 99bp 32566 chr19 40883791 40883791 1 + C T UCEC 40883792 + 40883772 40883812 41 CTGAACGCGCCACCTACATCGGTGAGTGTCTTGAGCACCAC CTGAACGCGCCACCTACATTGGTGAGTGTCTTGAGCACCAC < 41bp 0.518692958729324 0.721617825558874 NA NA prediction 0.405849733659101 Functional Gain - PLD3 ENSG00000105223 CDS Human protein_coding chr19:40883792 chr19:40883791 synonymous SNV . 0 20 hm7G_associated_SNPs_35424 0 0 1 0 2 PLD3 chr19:40883792 5'GT 40883792 Upstream 2bp 32567 chr22 24730391 24730391 1 + C T STAD 24730392 + 24730372 24730412 41 TTTCAGGCAAGAGGAGGAGCGAGGCCGGGTATACAATTACA TTTCAGGCAAGAGGAGGAGTGAGGCCGGGTATACAATTACA < 41bp 0.512468947934278 0.71539216720109 NA NA prediction 0.405846438533626 Functional Gain - SPECC1L ENSG00000100014;ENSG00000258555 CDS Human other chr22:24730392 chr22:24730391 stopgain 1.000 1 20 hm7G_associated_SNPs_35425 0 0 1 0 1 SPECC1L chr22:24730378 3'AG 24730378 Downstream 14bp 32568 chr22 19748718 19748718 1 + G T GBM 19748719 + 19748699 19748739 41 GAAGAACGCGAAGGTGGCCGGTGTGAGCGTGCAGCTAGAGA GAAGAACGCGAAGGTGGCCTGTGTGAGCGTGCAGCTAGAGA < 41bp 0.703585955969763 0.906508361836964 NA NA prediction 0.405844811734401 Functional Gain - TBX1 ENSG00000184058 CDS Human protein_coding chr22:19748719 chr22:19748718 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_35426 0 0 1 0 1 TBX1 chr22:19748803 5'GT 19748803 Upstream 86bp 32569 chr11 130069925 130069925 1 + G T GBM 130069926 + 130069906 130069946 41 AGGGCGAGTGGCCCTGGCAGGTAAGCCTGCATGCTCTGGGC AGGGCGAGTGGCCCTGGCATGTAAGCCTGCATGCTCTGGGC < 41bp 0.349492252513702 0.70292110864355 NA NA prediction 0.4058422172871 Functional Gain - ST14 ENSG00000149418 CDS Human protein_coding chr11:130069926 chr11:130069925 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_35428 0 0 0 0 1 ST14 chr11:130069846 3'AG 130069846 Downstream 80bp 32570 chr10 63810750 63810750 1 + C T CESC 63810751 + 63810731 63810771 41 ACAATTCCGATGGCAAAGCCGTTGCCAAGGTACGGTCATTC ACAATTCCGATGGCAAAGCTGTTGCCAAGGTACGGTCATTC < 41bp 0.509546345205349 0.712467277210048 NA NA prediction 0.405841864009397 Functional Gain - ARID5B ENSG00000150347 CDS Human protein_coding chr10:63810751 chr10:63810750 synonymous SNV . 0 20 hm7G_associated_SNPs_35429 0 0 1 0 1 ARID5B chr10:63810759 5'GT 63810759 Upstream 10bp 32571 chr10 99619286 99619286 1 + C T BRCA 99619287 + 99619267 99619307 41 TTATCCAGAGAGACTACAGCGATGGGACCATCTGTCAGTTC TTATCCAGAGAGACTACAGTGATGGGACCATCTGTCAGTTC < 41bp 0.545472972601992 0.748393855457116 NA NA prediction 0.405841765710247 Functional Gain - GOLGA7B ENSG00000155265 CDS Human protein_coding chr10:99619287 chr10:99619286 synonymous SNV . 0 20 hm7G_associated_SNPs_35430 0 0 0 0 2 GOLGA7B chr10:99619215 3'AG 99619215 Downstream 72bp 32572 chr10 99619286 99619286 1 + C T BRCA 99619287 + 99619267 99619307 41 TTATCCAGAGAGACTACAGCGATGGGACCATCTGTCAGTTC TTATCCAGAGAGACTACAGTGATGGGACCATCTGTCAGTTC < 41bp 0.545472972601992 0.748393855457116 NA NA prediction 0.405841765710247 Functional Gain - GOLGA7B ENSG00000155265 CDS Human protein_coding chr10:99619287 chr10:99619286 synonymous SNV . 0 20 hm7G_associated_SNPs_35430 0 0 0 0 2 GOLGA7B chr10:99619340 5'GT 99619340 Upstream 55bp 32573 chr20 39977786 39977786 1 + G A rs75791892 39977787 + 39977767 39977807 41 AAGACATCTACCCCTACTCGGATGGCGAGTGGCCCCCCCAG AAGACATCTACCCCTACTCAGATGGCGAGTGGCCCCCCCAG < 41bp 0.570173862632796 0.773091862939165 NA NA prediction 0.405836000612739 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977787 chr20:39977786 synonymous SNV . 0 20 hm7G_associated_SNPs_35432 0 0 1 0 3 LPIN3 chr20:39977729 3'AG 39977729 Downstream 58bp 32574 chr20 39977786 39977786 1 + G A rs75791892 39977787 + 39977767 39977807 41 AAGACATCTACCCCTACTCGGATGGCGAGTGGCCCCCCCAG AAGACATCTACCCCTACTCAGATGGCGAGTGGCCCCCCCAG < 41bp 0.570173862632796 0.773091862939165 NA NA prediction 0.405836000612739 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977787 chr20:39977786 synonymous SNV . 0 20 hm7G_associated_SNPs_35432 0 0 1 0 3 LPIN3 chr20:39977732 3'AG 39977732 Downstream 55bp 32575 chr20 39977786 39977786 1 + G A rs75791892 39977787 + 39977767 39977807 41 AAGACATCTACCCCTACTCGGATGGCGAGTGGCCCCCCCAG AAGACATCTACCCCTACTCAGATGGCGAGTGGCCCCCCCAG < 41bp 0.570173862632796 0.773091862939165 NA NA prediction 0.405836000612739 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39977787 chr20:39977786 synonymous SNV . 0 20 hm7G_associated_SNPs_35432 0 0 1 0 3 LPIN3 chr20:39977812 5'GT 39977812 Upstream 27bp 32576 chr9 125863866 125863866 1 + C T STAD 125863867 + 125863847 125863887 41 AAAAGTGGATGACTGTGAGCGGTGCCGGGAATTTTTCAACA AAAAGTGGATGACTGTGAGTGGTGCCGGGAATTTTTCAACA < 41bp 0.495144640743125 0.702917787752037 NA NA prediction 0.405835575504073 Functional Gain - RABGAP1 ENSG00000011454 CDS Human protein_coding chr9:125863867 chr9:125863866 nonsynonymous SNV 0.982 1 20 hm7G_associated_SNPs_35433 0 0 1 0 1 RABGAP1 chr9:125863845 3'AG 125863845 Downstream 22bp 32577 chr13 113765078 113765078 1 + C T COAD 113765079 + 113765059 113765099 41 CGCGTTCCTGGAGGAGCTGCGGCCGGGCTCCCTGGAGAGGG CGCGTTCCTGGAGGAGCTGTGGCCGGGCTCCCTGGAGAGGG < 41bp 0.50936995341993 0.712287310179495 NA NA prediction 0.405834713519129 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113765079 chr13:113765078 nonsynonymous SNV 0.770 1 20 hm7G_associated_SNPs_35434 0 0 1 0 2 F7 chr13:113765004 3'AG 113765004 Downstream 75bp 32578 chr13 113765078 113765078 1 + C T COAD 113765079 + 113765059 113765099 41 CGCGTTCCTGGAGGAGCTGCGGCCGGGCTCCCTGGAGAGGG CGCGTTCCTGGAGGAGCTGTGGCCGGGCTCCCTGGAGAGGG < 41bp 0.50936995341993 0.712287310179495 NA NA prediction 0.405834713519129 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113765079 chr13:113765078 nonsynonymous SNV 0.770 1 20 hm7G_associated_SNPs_35434 0 0 1 0 2 F7 chr13:113765164 5'GT 113765164 Upstream 87bp 32579 chr4 77941690 77941690 1 + C T COAD 77941691 + 77941671 77941711 41 TTGCGATTTTGTGAAACTTCGAGAGATGCTGATCCGCGTGA TTGCGATTTTGTGAAACTTTGAGAGATGCTGATCCGCGTGA < 41bp 0.547447246650574 0.750364092455149 NA NA prediction 0.405833691609149 Functional Gain - SEPT11 ENSG00000138758 CDS Human protein_coding chr4:77941691 chr4:77941690 stopgain 0.979 1 20 hm7G_associated_SNPs_35435 0 0 1 0 1 SEPT11 chr4:77941655 3'AG 77941655 Downstream 36bp 32580 chr19 56565173 56565173 1 + G A SKCM 56565174 + 56565154 56565194 41 CAGTGTTCTGGCGAGACTCGGGTAACTTCCTGGGGCGCCTC CAGTGTTCTGGCGAGACTCAGGTAACTTCCTGGGGCGCCTC < 41bp 0.512032444625579 0.714948197292392 NA NA prediction 0.405831505333625 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565174 chr19:56565173 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_35437 0 0 0 0 1 NLRP5 chr19:56565174 5'GT 56565174 Upstream 2bp 32581 chr19 7604827 7604827 1 + C T UCEC 7604828 + 7604808 7604848 41 CTGCGCATCCAGAAAGAGACGCCCACGCTGCAGCGGAAGGA CTGCGCATCCAGAAAGAGATGCCCACGCTGCAGCGGAAGGA < 41bp 0.527017176441339 0.72993263950802 NA NA prediction 0.405830926133361 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7604828 chr19:7604827 nonsynonymous SNV 0.075 0 20 hm7G_associated_SNPs_35438 0 0 1 0 1 PNPLA6 chr19:7604804 3'AG 7604804 Downstream 24bp 32582 chr18 2885092 2885092 1 + C T SKCM 2885093 + 2885073 2885113 41 AGACCCCGTGAAGACCCTCCGCCCCACGCCGGCTCGGCCTC AGACCCCGTGAAGACCCTCTGCCCCACGCCGGCTCGGCCTC < 41bp 0.490637321223664 0.702915129246078 NA NA prediction 0.405830258492156 Functional Gain - EMILIN2 ENSG00000132205 CDS Human protein_coding chr18:2885093 chr18:2885092 nonsynonymous SNV 0.006 2 20 hm7G_associated_SNPs_35439 0 0 0 0 1 EMILIN2 chr18:2885137 5'GT 2885137 Upstream 46bp 32583 chr2 111551698 111551698 1 + G A SKCM 111551699 + 111551679 111551719 41 AATGACCGAGAGGGGCCATGGGAGCAACGCGAGAGGGATCC AATGACCGAGAGGGGCCATAGGAGCAACGCGAGAGGGATCC < 41bp 0.505887035258879 0.708801420730273 NA NA prediction 0.405828770942787 Functional Gain - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111551699 chr2:111551698 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_35440 0 0 0 0 2 ACOXL chr2:111551653 3'AG 111551653 Downstream 46bp 32584 chr2 111551698 111551698 1 + G A SKCM 111551699 + 111551679 111551719 41 AATGACCGAGAGGGGCCATGGGAGCAACGCGAGAGGGATCC AATGACCGAGAGGGGCCATAGGAGCAACGCGAGAGGGATCC < 41bp 0.505887035258879 0.708801420730273 NA NA prediction 0.405828770942787 Functional Gain - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111551699 chr2:111551698 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_35440 0 0 0 0 2 ACOXL chr2:111551751 5'GT 111551751 Upstream 54bp 32585 chr19 45261569 45261569 1 + G A COAD 45261570 + 45261550 45261590 41 GCACTCAGCGTCCGGCCGCGGGCTCCTCCCGCTGGTGCGCA GCACTCAGCGTCCGGCCGCAGGCTCCTCCCGCTGGTGCGCA < 41bp 0.476499907420704 0.702910355982955 NA NA prediction 0.405820711965911 Functional Gain - BCL3 ENSG00000069399 CDS Human protein_coding chr19:45261570 chr19:45261569 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_35442 0 0 0 0 1 BCL3 chr19:45261503 3'AG 45261503 Downstream 67bp 32586 chr14 24534240 24534240 1 + C T LUSC 24534241 + 24534221 24534261 41 TCCACTCCAGAAGAAGAGGCGCCGGGGCCTGTTTCACTTTC TCCACTCCAGAAGAAGAGGTGCCGGGGCCTGTTTCACTTTC < 41bp 0.509392151709706 0.712301610823309 NA NA prediction 0.405818918227207 Functional Gain - CARMIL3 ENSG00000186648 CDS Human protein_coding chr14:24534241 chr14:24534240 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_35443 0 0 0 0 1 CARMIL3 chr14:24534167 3'AG 24534167 Downstream 74bp 32587 chr4 128584715 128584715 1 + C T UCEC 128584716 + 128584696 128584736 41 TGTATCTCACACTACAGCTCGACTCAGAAACCTCAAAGGAA TGTATCTCACACTACAGCTTGACTCAGAAACCTCAAAGGAA < 41bp 0.51163271064194 0.714541974582201 NA NA prediction 0.405818527880521 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128584716 chr4:128584715 synonymous SNV . 0 20 hm7G_associated_SNPs_35444 0 0 1 0 1 INTU chr4:128584739 5'GT 128584739 Upstream 25bp 32588 chr11 129722527 129722527 1 + C T rs139011868 129722528 + 129722508 129722548 41 GTCTCGAGATCGTCGAAGCCGCAATTAGGACTTTGTTTTCC GTCTCGAGATCGTCGAAGCTGCAATTAGGACTTTGTTTTCC < 41bp 0.494674404108598 0.702907455032099 NA NA prediction 0.405814910064197 Functional Gain - TMEM45B ENSG00000151715 CDS Human protein_coding chr11:129722528 chr11:129722527 synonymous SNV . 0 20 hm7G_associated_SNPs_35445 0 0 1 0 1 TMEM45B chr11:129722555 5'GT 129722555 Upstream 29bp 32589 chrX 9682986 9682986 1 + C T UCEC 9682987 + 9682967 9683007 41 GAGGCACTGGCGGCATCTTCGAGGTGTGCTGGAACGCCCGA GAGGCACTGGCGGCATCTTTGAGGTGTGCTGGAACGCCCGA < 41bp 0.489694932340116 0.702905918925525 NA NA prediction 0.40581183785105 Functional Gain - TBL1X ENSG00000101849 CDS Human protein_coding chrX:9682987 chrX:9682986 synonymous SNV . 0 20 hm7G_associated_SNPs_35447 0 0 1 0 1 TBL1X chrX:9683043 5'GT 9683043 Upstream 58bp 32590 chr9 136270388 136270388 1 + C T COAD 136270389 + 136270369 136270409 41 CCTGCAGAGGAGATCCTGCCGGAGCTGGTGTCCAGTAGTAT CCTGCAGAGGAGATCCTGCTGGAGCTGGTGTCCAGTAGTAT < 41bp 0.511680225863141 0.714585908033378 NA NA prediction 0.405811364340474 Functional Gain - STKLD1 ENSG00000198870 CDS Human protein_coding chr9:136270389 chr9:136270388 nonsynonymous SNV 0.542 1 20 hm7G_associated_SNPs_35448 0 0 0 0 1 STKLD1 chr9:136270376 3'AG 136270376 Downstream 13bp 32591 chr5 38352385 38352385 1 + C T LUAD 38352386 + 38352366 38352406 41 CTGTCTTGGAAACCTGGAGCGAGTGAAGGAAGCGCCCCTAT CTGTCTTGGAAACCTGGAGTGAGTGAAGGAAGCGCCCCTAT < 41bp 0.53586014738056 0.738763037400644 NA NA prediction 0.405805780040168 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38352386 chr5:38352385 nonsynonymous SNV 0.309 1 20 hm7G_associated_SNPs_35451 0 0 0 0 2 EGFLAM chr5:38352298 3'AG 38352298 Downstream 88bp 32592 chr5 38352385 38352385 1 + C T LUAD 38352386 + 38352366 38352406 41 CTGTCTTGGAAACCTGGAGCGAGTGAAGGAAGCGCCCCTAT CTGTCTTGGAAACCTGGAGTGAGTGAAGGAAGCGCCCCTAT < 41bp 0.53586014738056 0.738763037400644 NA NA prediction 0.405805780040168 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38352386 chr5:38352385 nonsynonymous SNV 0.309 1 20 hm7G_associated_SNPs_35451 0 0 0 0 2 EGFLAM chr5:38352433 5'GT 38352433 Upstream 49bp 32593 chr2 31484420 31484420 1 + C T UCEC 31484421 + 31484401 31484441 41 GCCCTGTTTGTCAGGTCCACGCCTACATCATCAGCTCTCTG GCCCTGTTTGTCAGGTCCATGCCTACATCATCAGCTCTCTG < 41bp 0.539991598437325 0.74289405340966 NA NA prediction 0.40580490994467 Functional Gain - EHD3 ENSG00000013016 CDS Human protein_coding chr2:31484421 chr2:31484420 synonymous SNV . 0 20 hm7G_associated_SNPs_35452 0 0 0 0 1 EHD3 chr2:31484415 3'AG 31484415 Downstream 6bp 32594 chr10 90672924 90672924 1 + C T UCEC 90672925 + 90672905 90672945 41 GATAGAGGCAGAAAGGAAGCGGATTGCTCAGATGCGCCAGC GATAGAGGCAGAAAGGAAGTGGATTGCTCAGATGCGCCAGC < 41bp 0.494382778728838 0.702901943777383 NA NA prediction 0.405803887554767 Functional Gain - STAMBPL1 ENSG00000138134 CDS Human protein_coding chr10:90672925 chr10:90672924 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_35453 0 0 0 0 1 STAMBPL1 chr10:90672858 3'AG 90672858 Downstream 67bp 32595 chr7 80300317 80300317 1 + C T GBM 80300318 + 80300298 80300338 41 TCTATGCTGTATTTGAATCCGACGTTAATCTGAAAGGAATC TCTATGCTGTATTTGAATCTGACGTTAATCTGAAAGGAATC < 41bp 0.513284886315066 0.716186313397312 NA NA prediction 0.405802854164494 Functional Gain - CD36 ENSG00000135218 CDS Human protein_coding chr7:80300318 chr7:80300317 synonymous SNV . 0 20 hm7G_associated_SNPs_35454 0 0 1 0 1 CD36 chr7:80300293 3'AG 80300293 Downstream 25bp 32596 chr3 126741603 126741603 1 + C T UCEC 126741604 + 126741584 126741624 41 GTGCTCCCCAGGACTGAGTCGGTGGCAGAGAAGATGCTAAC GTGCTCCCCAGGACTGAGTTGGTGGCAGAGAAGATGCTAAC < 41bp 0.55283534350114 0.755732416058631 NA NA prediction 0.405794145114982 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126741604 chr3:126741603 nonsynonymous SNV 0.731 1 20 hm7G_associated_SNPs_35456 0 0 1 0 2 PLXNA1 chr3:126741595 3'AG 126741595 Downstream 9bp 32597 chr3 126741603 126741603 1 + C T UCEC 126741604 + 126741584 126741624 41 GTGCTCCCCAGGACTGAGTCGGTGGCAGAGAAGATGCTAAC GTGCTCCCCAGGACTGAGTTGGTGGCAGAGAAGATGCTAAC < 41bp 0.55283534350114 0.755732416058631 NA NA prediction 0.405794145114982 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126741604 chr3:126741603 nonsynonymous SNV 0.731 1 20 hm7G_associated_SNPs_35456 0 0 1 0 2 PLXNA1 chr3:126741661 5'GT 126741661 Upstream 59bp 32598 chr1 9780180 9780180 1 + C T LUAD 9780181 + 9780161 9780201 41 TGTGTTCAGATGAGAAGGGCGAGCTGCTGAACCCCACGGGC TGTGTTCAGATGAGAAGGGTGAGCTGCTGAACCCCACGGGC < 41bp 0.544129770428891 0.747026345885858 NA NA prediction 0.405793150913934 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9780181 chr1:9780180 synonymous SNV . 0 20 hm7G_associated_SNPs_35457 0 0 1 0 1 PIK3CD chr1:9780170 3'AG 9780170 Downstream 11bp 32599 chr1 45110742 45110742 1 + C T rs116503928 45110743 + 45110723 45110763 41 AGAGAGAGGCACTTCGGGGCGCAGTCCTAAAGCAAGTGTGG AGAGAGAGGCACTTCGGGGTGCAGTCCTAAAGCAAGTGTGG < 41bp 0.526313028785912 0.729209067957884 NA NA prediction 0.405792078343943 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45110743 chr1:45110742 synonymous SNV . 0 20 hm7G_associated_SNPs_35458 0 0 1 0 1 RNF220 chr1:45110667 3'AG 45110667 Downstream 76bp 32600 chr14 100595019 100595019 1 + C T COAD 100595020 + 100595000 100595040 41 GAGCCCAGGGGTCCAGCCACGACGAGAGCTCCATGTCAGGA GAGCCCAGGGGTCCAGCCATGACGAGAGCTCCATGTCAGGA < 41bp 0.538900535952537 0.741796176706291 NA NA prediction 0.405791281507509 Functional Gain - EVL ENSG00000196405 CDS Human protein_coding chr14:100595020 chr14:100595019 synonymous SNV . 0 20 hm7G_associated_SNPs_35459 0 0 1 0 1 EVL chr14:100595085 5'GT 100595085 Upstream 67bp 32601 chr3 9982650 9982650 1 + G A KIRC 9982651 + 9982631 9982671 41 CTACGGGGGTGAGGCCTGTGGCCAGTGTGGCCTTGGCTACT CTACGGGGGTGAGGCCTGTAGCCAGTGTGGCCTTGGCTACT < 41bp 0.582697211086033 0.78558579952961 NA NA prediction 0.405777176887156 Functional Gain - CRELD1 ENSG00000163703 CDS Human protein_coding chr3:9982651 chr3:9982650 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_35464 0 0 1 0 1 CRELD1 chr3:9982710 5'GT 9982710 Upstream 61bp 32602 chr19 7516059 7516059 1 + C T UCEC 7516060 + 7516040 7516080 41 TGGCAACTTCTCCATCGTGCGGCGGCTTGGCGTGCAGGAGT TGGCAACTTCTCCATCGTGTGGCGGCTTGGCGTGCAGGAGT < 41bp 0.538645192502775 0.741533366621257 NA NA prediction 0.405776348236963 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7516060 chr19:7516059 nonsynonymous SNV 0.143 4 20 hm7G_associated_SNPs_35465 0 0 1 0 2 ARHGEF18 chr19:7516035 3'AG 7516035 Downstream 25bp 32603 chr19 7516059 7516059 1 + C T UCEC 7516060 + 7516040 7516080 41 TGGCAACTTCTCCATCGTGCGGCGGCTTGGCGTGCAGGAGT TGGCAACTTCTCCATCGTGTGGCGGCTTGGCGTGCAGGAGT < 41bp 0.538645192502775 0.741533366621257 NA NA prediction 0.405776348236963 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7516060 chr19:7516059 nonsynonymous SNV 0.143 4 20 hm7G_associated_SNPs_35465 0 0 1 0 2 ARHGEF18 chr19:7516152 5'GT 7516152 Upstream 94bp 32604 chr1 156551248 156551248 1 + G A rs192869620 156551249 + 156551229 156551269 41 AAGAAAAGAAAGTGGCTGCGGCAAGAAGCCAGCATCCAAGC AAGAAAAGAAAGTGGCTGCAGCAAGAAGCCAGCATCCAAGC < 41bp 0.583664995241503 0.786552728277305 NA NA prediction 0.405775466071604 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156551249 chr1:156551248 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_35466 0 0 0 0 1 TTC24 chr1:156551153 3'AG 156551153 Downstream 96bp 32605 chr18 43310353 43310353 1 + C T GBM 43310354 + 43310334 43310374 41 AGGGGTGAAAACCAGGTTTCGCCATGTCAAGGGAGAAGGTG AGGGGTGAAAACCAGGTTTTGCCATGTCAAGGGAGAAGGTG < 41bp 0.505071047063732 0.70795851783467 NA NA prediction 0.405774941541877 Functional Gain - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43310354 chr18:43310353 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_35467 0 0 0 0 1 SLC14A1 chr18:43310436 5'GT 43310436 Upstream 84bp 32606 chr19 40095888 40095888 1 + C T GBM 40095889 + 40095869 40095909 41 AGATATTGCCTTCCGTTTCCGAGTGCACTTTGGCAATCATG AGATATTGCCTTCCGTTTCTGAGTGCACTTTGGCAATCATG < 41bp 0.523462655350178 0.726349783208002 NA NA prediction 0.405774255715647 Functional Gain - LGALS13 ENSG00000105198 CDS Human protein_coding chr19:40095889 chr19:40095888 stopgain 0.013 0 20 hm7G_associated_SNPs_35468 0 0 0 0 1 LGALS13 chr19:40095818 3'AG 40095818 Downstream 71bp 32607 chr1 45110700 45110700 1 + C T CESC 45110701 + 45110681 45110721 41 ATGTCATCCCCTGCACAGGCGAGGAGCCTGGTGAAGCCAAG ATGTCATCCCCTGCACAGGTGAGGAGCCTGGTGAAGCCAAG < 41bp 0.553202715181055 0.756088921258147 NA NA prediction 0.405772412154185 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45110701 chr1:45110700 synonymous SNV . 0 20 hm7G_associated_SNPs_35469 0 0 1 0 1 RNF220 chr1:45110667 3'AG 45110667 Downstream 34bp 32608 chr3 113652396 113652396 1 + G T LUSC 113652397 + 113652377 113652417 41 GGGAAGCACGATTTTATTTGGTAGATTCAGAAGTACTGACA GGGAAGCACGATTTTATTTTGTAGATTCAGAAGTACTGACA < 41bp 0.37543319873347 0.702885428552152 NA NA prediction 0.405770857104305 Functional Gain - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113652397 chr3:113652396 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_35470 0 0 0 1 1 GRAMD1C chr3:113652358 3'AG 113652358 Downstream 39bp 32609 chrX 1752130 1752130 1 + C T STAD 1752131 + 1752111 1752151 41 ATCCCAGAAGTGGTGTGGACGGCAAAGCAGCACTTCTCATT ATCCCAGAAGTGGTGTGGATGGCAAAGCAGCACTTCTCATT < 41bp 0.488578494378089 0.7028852523073 NA NA prediction 0.405770504614601 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1752131 chrX:1752130 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35471 0 0 0 0 2 ASMT chrX:1752043 3'AG 1752043 Downstream 88bp 32610 chrX 1752130 1752130 1 + C T STAD 1752131 + 1752111 1752151 41 ATCCCAGAAGTGGTGTGGACGGCAAAGCAGCACTTCTCATT ATCCCAGAAGTGGTGTGGATGGCAAAGCAGCACTTCTCATT < 41bp 0.488578494378089 0.7028852523073 NA NA prediction 0.405770504614601 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1752131 chrX:1752130 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35471 0 0 0 0 2 ASMT chrX:1752183 5'GT 1752183 Upstream 54bp 32611 chr8 6338338 6338338 1 + C T UCEC 6338339 + 6338319 6338359 41 GCTTTCCGGGAAGCCACTTCGCACCCTGAATGTGCTGCTGG GCTTTCCGGGAAGCCACTTTGCACCCTGAATGTGCTGCTGG < 41bp 0.51516783018897 0.718048054930165 NA NA prediction 0.40576044948239 Functional Gain - MCPH1 ENSG00000147316 CDS Human protein_coding chr8:6338339 chr8:6338338 nonsynonymous SNV 0.048 4 20 hm7G_associated_SNPs_35474 1 0 1 0 1 MCPH1 chr8:6338397 5'GT 6338397 Upstream 60bp 32612 chr5 61653554 61653554 1 + C T KICH 61653555 + 61653535 61653575 41 ATGTGTGTGTGTAAGAAAACGACCACTCAATAAAAAAGGTA ATGTGTGTGTGTAAGAAAATGACCACTCAATAAAAAAGGTA < 41bp 0.520115340371346 0.722993108819964 NA NA prediction 0.405755536897236 Functional Gain - KIF2A ENSG00000068796 CDS Human protein_coding chr5:61653555 chr5:61653554 stopgain 1.000 1 20 hm7G_associated_SNPs_35475 0 0 1 0 2 KIF2A chr5:61653518 3'AG 61653518 Downstream 37bp 32613 chr5 61653554 61653554 1 + C T KICH 61653555 + 61653535 61653575 41 ATGTGTGTGTGTAAGAAAACGACCACTCAATAAAAAAGGTA ATGTGTGTGTGTAAGAAAATGACCACTCAATAAAAAAGGTA < 41bp 0.520115340371346 0.722993108819964 NA NA prediction 0.405755536897236 Functional Gain - KIF2A ENSG00000068796 CDS Human protein_coding chr5:61653555 chr5:61653554 stopgain 1.000 1 20 hm7G_associated_SNPs_35475 0 0 1 0 2 KIF2A chr5:61653572 5'GT 61653572 Upstream 19bp 32614 chr21 48078690 48078690 1 + C T COAD 48078691 + 48078671 48078711 41 CGAGTCCATCCTGTATGCCCGGGATGCCTGGCTGAAGGAGG CGAGTCCATCCTGTATGCCTGGGATGCCTGGCTGAAGGAGG < 41bp 0.502907865145806 0.705783506608731 NA NA prediction 0.40575128292585 Functional Gain - PRMT2 ENSG00000160310 CDS Human protein_coding chr21:48078691 chr21:48078690 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_35476 0 0 1 0 1 PRMT2 chr21:48078657 3'AG 48078657 Downstream 34bp 32615 chrX 153050799 153050799 1 + C T LUSC 153050800 + 153050780 153050820 41 CCTGCCCGCAGGAGAGCTGCGGCACATCCACAATCTCAAGC CCTGCCCGCAGGAGAGCTGTGGCACATCCACAATCTCAAGC < 41bp 0.52402159595303 0.726897236838875 NA NA prediction 0.405751281771689 Functional Gain - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153050800 chrX:153050799 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35477 0 0 0 0 1 SRPK3 chrX:153050791 3'AG 153050791 Downstream 9bp 32616 chr6 148855984 148855984 1 + C T SKCM 148855985 + 148855965 148856005 41 GAGTTAAATATCAGGGACCCGGAACACAGAGCTGTTCTCTT GAGTTAAATATCAGGGACCTGGAACACAGAGCTGTTCTCTT < 41bp 0.546865970543175 0.749740691294707 NA NA prediction 0.405749441503065 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148855985 chr6:148855984 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_35478 0 0 1 0 2 SASH1 chr6:148855887 3'AG 148855887 Downstream 98bp 32617 chr6 148855984 148855984 1 + C T SKCM 148855985 + 148855965 148856005 41 GAGTTAAATATCAGGGACCCGGAACACAGAGCTGTTCTCTT GAGTTAAATATCAGGGACCTGGAACACAGAGCTGTTCTCTT < 41bp 0.546865970543175 0.749740691294707 NA NA prediction 0.405749441503065 Functional Gain - SASH1 ENSG00000111961 CDS Human protein_coding chr6:148855985 chr6:148855984 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_35478 0 0 1 0 2 SASH1 chr6:148856037 5'GT 148856037 Upstream 54bp 32618 chr22 37709524 37709524 1 + G T THCA 37709525 + 37709505 37709545 41 TACGACCTGGTCTCTACTCGGAAGAAGAAGATTGCCAGCAA TACGACCTGGTCTCTACTCTGAAGAAGAAGATTGCCAGCAA < 41bp 0.693798339685934 0.896672809214633 NA NA prediction 0.405748939057399 Functional Gain - CYTH4 ENSG00000100055 CDS Human protein_coding chr22:37709525 chr22:37709524 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35479 0 0 0 0 1 CYTH4 chr22:37709480 3'AG 37709480 Downstream 45bp 32619 chr1 110734625 110734625 1 + G A LUAD 110734626 + 110734606 110734646 41 CTGGACCCCCAGGTGTGGCGGGAGGCAGCTACCCAGGTCTT CTGGACCCCCAGGTGTGGCAGGAGGCAGCTACCCAGGTCTT < 41bp 0.551852503749986 0.754726507324764 NA NA prediction 0.405748007149556 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110734626 chr1:110734625 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35480 0 0 0 0 1 SLC6A17 chr1:110734594 3'AG 110734594 Downstream 32bp 32620 chr14 75277083 75277083 1 + C T STAD 75277084 + 75277064 75277104 41 TGGTGTTATTGACTATGACCGGGATCGATTTGACAGAGAAC TGGTGTTATTGACTATGACTGGGATCGATTTGACAGAGAAC < 41bp 0.518493286486935 0.721366227322367 NA NA prediction 0.405745881670863 Functional Gain - YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75277084 chr14:75277083 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_35484 0 0 1 0 1 YLPM1 chr14:75277123 5'GT 75277123 Upstream 41bp 32621 chr9 96429453 96429453 1 + C T SKCM 96429454 + 96429434 96429474 41 AAGAAGGAGAGTGGGAGCTCGGCAGCTGGCATCTTGGACCT AAGAAGGAGAGTGGGAGCTTGGCAGCTGGCATCTTGGACCT < 41bp 0.543176576596406 0.746047802090514 NA NA prediction 0.405742450988216 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96429454 chr9:96429453 nonsynonymous SNV 0.521 1 20 hm7G_associated_SNPs_35487 0 0 1 0 3 PHF2 chr9:96429359 3'AG 96429359 Downstream 95bp 32622 chr9 96429453 96429453 1 + C T SKCM 96429454 + 96429434 96429474 41 AAGAAGGAGAGTGGGAGCTCGGCAGCTGGCATCTTGGACCT AAGAAGGAGAGTGGGAGCTTGGCAGCTGGCATCTTGGACCT < 41bp 0.543176576596406 0.746047802090514 NA NA prediction 0.405742450988216 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96429454 chr9:96429453 nonsynonymous SNV 0.521 1 20 hm7G_associated_SNPs_35487 0 0 1 0 3 PHF2 chr9:96429362 3'AG 96429362 Downstream 92bp 32623 chr9 96429453 96429453 1 + C T SKCM 96429454 + 96429434 96429474 41 AAGAAGGAGAGTGGGAGCTCGGCAGCTGGCATCTTGGACCT AAGAAGGAGAGTGGGAGCTTGGCAGCTGGCATCTTGGACCT < 41bp 0.543176576596406 0.746047802090514 NA NA prediction 0.405742450988216 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96429454 chr9:96429453 nonsynonymous SNV 0.521 1 20 hm7G_associated_SNPs_35487 0 0 1 0 3 PHF2 chr9:96429522 5'GT 96429522 Upstream 70bp 32624 chr21 47410320 47410320 1 + G A SKCM 47410321 + 47410301 47410341 41 GGCAAGCGTGGCATCGACGGGGTGGACGGCGTGAAGGTGAC GGCAAGCGTGGCATCGACGAGGTGGACGGCGTGAAGGTGAC < 41bp 0.574987082000956 0.777857232971936 NA NA prediction 0.405740301941959 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47410321 chr21:47410320 nonsynonymous SNV 0.460 5 20 hm7G_associated_SNPs_35489 0 0 0 0 2 COL6A1 chr21:47410292 3'AG 47410292 Downstream 29bp 32625 chr21 47410320 47410320 1 + G A SKCM 47410321 + 47410301 47410341 41 GGCAAGCGTGGCATCGACGGGGTGGACGGCGTGAAGGTGAC GGCAAGCGTGGCATCGACGAGGTGGACGGCGTGAAGGTGAC < 41bp 0.574987082000956 0.777857232971936 NA NA prediction 0.405740301941959 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47410321 chr21:47410320 nonsynonymous SNV 0.460 5 20 hm7G_associated_SNPs_35489 0 0 0 0 2 COL6A1 chr21:47410336 5'GT 47410336 Upstream 17bp 32626 chr2 220479250 220479250 1 + C T UCEC 220479251 + 220479231 220479271 41 TCGCCAGTTCTTCTACCTTCGGGCGTTCCTGGTTGAAGGTG TCGCCAGTTCTTCTACCTTTGGGCGTTCCTGGTTGAAGGTG < 41bp 0.495701916887617 0.702868972081706 NA NA prediction 0.405737944163411 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220479251 chr2:220479250 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_35491 0 0 1 0 2 STK11IP chr2:220479198 3'AG 220479198 Downstream 53bp 32627 chr2 220479250 220479250 1 + C T UCEC 220479251 + 220479231 220479271 41 TCGCCAGTTCTTCTACCTTCGGGCGTTCCTGGTTGAAGGTG TCGCCAGTTCTTCTACCTTTGGGCGTTCCTGGTTGAAGGTG < 41bp 0.495701916887617 0.702868972081706 NA NA prediction 0.405737944163411 Functional Gain - STK11IP ENSG00000144589 CDS Human protein_coding chr2:220479251 chr2:220479250 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_35491 0 0 1 0 2 STK11IP chr2:220479268 5'GT 220479268 Upstream 19bp 32628 chr11 1467077 1467077 1 + C T DLBC 1467078 + 1467058 1467098 41 ATGGAGGTGCTCAGCGTGACGGACGGCGGCTCCCCGGTGCC ATGGAGGTGCTCAGCGTGATGGACGGCGGCTCCCCGGTGCC < 41bp 0.526818733272275 0.72968374053937 NA NA prediction 0.40573001453419 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1467078 chr11:1467077 nonsynonymous SNV 0.788 3 20 hm7G_associated_SNPs_35494 0 0 1 0 2 BRSK2 chr11:1466987 3'AG 1466987 Downstream 91bp 32629 chr11 1467077 1467077 1 + C T DLBC 1467078 + 1467058 1467098 41 ATGGAGGTGCTCAGCGTGACGGACGGCGGCTCCCCGGTGCC ATGGAGGTGCTCAGCGTGATGGACGGCGGCTCCCCGGTGCC < 41bp 0.526818733272275 0.72968374053937 NA NA prediction 0.40573001453419 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1467078 chr11:1467077 nonsynonymous SNV 0.788 3 20 hm7G_associated_SNPs_35494 0 0 1 0 2 BRSK2 chr11:1467137 5'GT 1467137 Upstream 61bp 32630 chr13 113771805 113771805 1 + G A SKCM 113771806 + 113771786 113771826 41 GGTCCTGTTGTTGGTGAATGGAGCTCAGTTGTGTGGGGGGA GGTCCTGTTGTTGGTGAATAGAGCTCAGTTGTGTGGGGGGA < 41bp 0.53236575459829 0.735230586348393 NA NA prediction 0.405729663500205 Functional Gain - F7 ENSG00000057593 CDS Human protein_coding chr13:113771806 chr13:113771805 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_35495 0 0 1 0 1 F7 chr13:113771787 3'AG 113771787 Downstream 19bp 32631 chr3 184104496 184104496 1 + C T STAD 184104497 + 184104477 184104517 41 GCAGCGCCCCCACGGGGCTCGCTGGGCGCCCAACTACGACC GCAGCGCCCCCACGGGGCTTGCTGGGCGCCCAACTACGACC < 41bp 0.530724750544408 0.733589337018928 NA NA prediction 0.40572917294904 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184104497 chr3:184104496 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_35496 0 0 1 0 1 CHRD chr3:184104543 5'GT 184104543 Upstream 48bp 32632 chr11 10772966 10772966 1 + C T PAAD 10772967 + 10772947 10772987 41 TTTTGACCCCATCATGTCGCGGGGCTCCATCGAGATTCCCC TTTTGACCCCATCATGTCGTGGGGCTCCATCGAGATTCCCC < 41bp 0.503929428113555 0.706790744908089 NA NA prediction 0.405722633589067 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10772967 chr11:10772966 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35497 0 0 1 0 1 CTR9 chr11:10773004 5'GT 10773004 Upstream 39bp 32633 chr1 11718921 11718921 1 + G T LUAD 11718922 + 11718902 11718942 41 CAGAAGAGCGATGCCAAGTGGAGGGAGGTGCGTGGGCCTGG CAGAAGAGCGATGCCAAGTTGAGGGAGGTGCGTGGGCCTGG < 41bp 0.7054292214068 0.908287564662586 NA NA prediction 0.405716686511572 Functional Gain - FBXO44 ENSG00000132879 CDS Human protein_coding chr1:11718922 chr1:11718921 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35499 0 0 1 0 1 FBXO44 chr1:11718928 5'GT 11718928 Upstream 8bp 32634 chr5 150050098 150050098 1 + G A SKCM 150050099 + 150050079 150050119 41 TGCCCCAGGACCTGATGATGGAGGAGCTGTCACTACGCAAC TGCCCCAGGACCTGATGATAGAGGAGCTGTCACTACGCAAC < 41bp 0.520479792113064 0.723337116467189 NA NA prediction 0.40571464870825 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150050099 chr5:150050098 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_35501 0 0 0 0 1 MYOZ3 chr5:150050046 3'AG 150050046 Downstream 53bp 32635 chr20 2843464 2843464 1 + C T SKCM 2843465 + 2843445 2843485 41 CTTCTCAGGCCGCCTCCTTCGGAAAGTGTTTCCTGGACAGA CTTCTCAGGCCGCCTCCTTTGGAAAGTGTTTCCTGGACAGA < 41bp 0.549971234950952 0.75282789385596 NA NA prediction 0.405713317810016 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2843465 chr20:2843464 synonymous SNV . 0 20 hm7G_associated_SNPs_35502 0 0 1 0 1 VPS16 chr20:2843453 3'AG 2843453 Downstream 12bp 32636 chr11 1475738 1475738 1 + G T LIHC 1475739 + 1475719 1475759 41 GCGAAGAAGTCCTGGTTTGGGAACTTCATCAGCCTGGAGAA GCGAAGAAGTCCTGGTTTGTGAACTTCATCAGCCTGGAGAA < 41bp 0.356470437752379 0.702854054757659 NA NA prediction 0.405708109515318 Functional Gain - BRSK2 ENSG00000174672 CDS Human protein_coding chr11:1475739 chr11:1475738 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35506 0 0 1 0 1 BRSK2 chr11:1475715 3'AG 1475715 Downstream 24bp 32637 chrX 43603382 43603382 1 + C T COAD 43603383 + 43603363 43603403 41 ATGGTCTCGGGAAGGTGACCGAGAAAGATATCTGGGTACAA ATGGTCTCGGGAAGGTGACTGAGAAAGATATCTGGGTACAA < 41bp 0.513371391443489 0.716224619222628 NA NA prediction 0.405706455558279 Functional Gain - MAOA ENSG00000189221 CDS Human protein_coding chrX:43603383 chrX:43603382 synonymous SNV . 0 20 hm7G_associated_SNPs_35507 0 0 0 0 2 MAOA chrX:43603356 3'AG 43603356 Downstream 27bp 32638 chrX 43603382 43603382 1 + C T COAD 43603383 + 43603363 43603403 41 ATGGTCTCGGGAAGGTGACCGAGAAAGATATCTGGGTACAA ATGGTCTCGGGAAGGTGACTGAGAAAGATATCTGGGTACAA < 41bp 0.513371391443489 0.716224619222628 NA NA prediction 0.405706455558279 Functional Gain - MAOA ENSG00000189221 CDS Human protein_coding chrX:43603383 chrX:43603382 synonymous SNV . 0 20 hm7G_associated_SNPs_35507 0 0 0 0 2 MAOA chrX:43603418 5'GT 43603418 Upstream 37bp 32639 chr20 44642386 44642386 1 + G A BLCA 44642387 + 44642367 44642407 41 CCGCGCTGCCCCGCAAGCTGGACTCGGTCTTTGAGGAGCGG CCGCGCTGCCCCGCAAGCTAGACTCGGTCTTTGAGGAGCGG < 41bp 0.571475524612914 0.7743277839924 NA NA prediction 0.405704518758972 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642387 chr20:44642386 synonymous SNV . 0 20 hm7G_associated_SNPs_35508 0 0 0 0 2 MMP9 chr20:44642296 3'AG 44642296 Downstream 91bp 32640 chr20 44642386 44642386 1 + G A BLCA 44642387 + 44642367 44642407 41 CCGCGCTGCCCCGCAAGCTGGACTCGGTCTTTGAGGAGCGG CCGCGCTGCCCCGCAAGCTAGACTCGGTCTTTGAGGAGCGG < 41bp 0.571475524612914 0.7743277839924 NA NA prediction 0.405704518758972 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44642387 chr20:44642386 synonymous SNV . 0 20 hm7G_associated_SNPs_35508 0 0 0 0 2 MMP9 chr20:44642435 5'GT 44642435 Upstream 50bp 32641 chr4 74276042 74276042 1 + G T THCA 74276043 + 74276023 74276063 41 TTGTAGCTCGATGAACTTCGGGATGAAGGGAAGGCTTCGTC TTGTAGCTCGATGAACTTCTGGATGAAGGGAAGGCTTCGTC < 41bp 0.696202644841197 0.899053346621614 NA NA prediction 0.405701403560834 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74276043 chr4:74276042 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35510 0 0 1 0 2 ALB chr4:74276029 3'AG 74276029 Downstream 14bp 32642 chr4 74276042 74276042 1 + G T THCA 74276043 + 74276023 74276063 41 TTGTAGCTCGATGAACTTCGGGATGAAGGGAAGGCTTCGTC TTGTAGCTCGATGAACTTCTGGATGAAGGGAAGGCTTCGTC < 41bp 0.696202644841197 0.899053346621614 NA NA prediction 0.405701403560834 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74276043 chr4:74276042 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35510 0 0 1 0 2 ALB chr4:74276126 5'GT 74276126 Upstream 85bp 32643 chr2 219483369 219483369 1 + G A SKCM 219483370 + 219483350 219483390 41 TGCTGCGTAGCCTGGCAGAGGAGCTCCCCCTGGAGCAGGGC TGCTGCGTAGCCTGGCAGAAGAGCTCCCCCTGGAGCAGGGC < 41bp 0.485699734920663 0.702849668257651 NA NA prediction 0.405699336515302 Functional Gain - PLCD4 ENSG00000115556 CDS Human protein_coding chr2:219483370 chr2:219483369 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_35511 0 0 0 0 1 PLCD4 chr2:219483302 3'AG 219483302 Downstream 68bp 32644 chr17 4795504 4795504 1 + C T STAD 4795505 + 4795485 4795525 41 CAGTGGGGCCGGAGGGTCCCGGCCAGCCCAGGCAGTCCGTG CAGTGGGGCCGGAGGGTCCTGGCCAGCCCAGGCAGTCCGTG < 41bp 0.484593823954636 0.702849488399257 NA NA prediction 0.405698976798514 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4795505 chr17:4795504 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_35512 0 0 1 0 2 MINK1 chr17:4795444 3'AG 4795444 Downstream 61bp 32645 chr17 4795504 4795504 1 + C T STAD 4795505 + 4795485 4795525 41 CAGTGGGGCCGGAGGGTCCCGGCCAGCCCAGGCAGTCCGTG CAGTGGGGCCGGAGGGTCCTGGCCAGCCCAGGCAGTCCGTG < 41bp 0.484593823954636 0.702849488399257 NA NA prediction 0.405698976798514 Functional Gain - MINK1 ENSG00000141503 CDS Human protein_coding chr17:4795505 chr17:4795504 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_35512 0 0 1 0 2 MINK1 chr17:4795529 5'GT 4795529 Upstream 26bp 32646 chr11 65715228 65715228 1 + G A LUSC 65715229 + 65715209 65715249 41 CGACAATGGAGGAAGACAAGGGCCAAGGAGCTGCAGGGGCC CGACAATGGAGGAAGACAAAGGCCAAGGAGCTGCAGGGGCC < 41bp 0.562563664071266 0.765406993026306 NA NA prediction 0.405686657910079 Functional Gain - TSGA10IP ENSG00000175513 CDS Human protein_coding chr11:65715229 chr11:65715228 unknown 0.042 0 20 hm7G_associated_SNPs_35514 0 0 0 1 1 TSGA10IP chr11:65715299 5'GT 65715299 Upstream 72bp 32647 chr17 4434061 4434061 1 + C T COAD 4434062 + 4434042 4434082 41 TGCTGTCCGTCTTCTACTTCGCCATCCCACTGGGCAGGTGA TGCTGTCCGTCTTCTACTTTGCCATCCCACTGGGCAGGTGA < 41bp 0.491646960281854 0.702842495936131 NA NA prediction 0.405684991872262 Functional Gain - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4434062 chr17:4434061 synonymous SNV . 0 20 hm7G_associated_SNPs_35515 0 0 0 0 1 SPNS2 chr17:4434078 5'GT 4434078 Upstream 18bp 32648 chr1 6501056 6501056 1 + G A SKCM 6501057 + 6501037 6501077 41 GCGACCGCGACGGGTACACGGCCGCCGACCTGTCGGACTTC GCGACCGCGACGGGTACACAGCCGCCGACCTGTCGGACTTC < 41bp 0.462414417426146 0.702841844557891 NA NA prediction 0.405683689115781 Functional Gain - ESPN ENSG00000187017 CDS Human protein_coding chr1:6501057 chr1:6501056 synonymous SNV . 0 20 hm7G_associated_SNPs_35516 0 0 0 0 2 ESPN chr1:6500994 3'AG 6500994 Downstream 63bp 32649 chr1 6501056 6501056 1 + G A SKCM 6501057 + 6501037 6501077 41 GCGACCGCGACGGGTACACGGCCGCCGACCTGTCGGACTTC GCGACCGCGACGGGTACACAGCCGCCGACCTGTCGGACTTC < 41bp 0.462414417426146 0.702841844557891 NA NA prediction 0.405683689115781 Functional Gain - ESPN ENSG00000187017 CDS Human protein_coding chr1:6501057 chr1:6501056 synonymous SNV . 0 20 hm7G_associated_SNPs_35516 0 0 0 0 2 ESPN chr1:6501125 5'GT 6501125 Upstream 70bp 32650 chr2 238991922 238991922 1 + C T ESCA 238991923 + 238991903 238991943 41 GATTGGCGCACTTTATATACGAGGACTTGGTGAATTTACCC GATTGGCGCACTTTATATATGAGGACTTGGTGAATTTACCC < 41bp 0.534272936896116 0.737112290901737 NA NA prediction 0.405678708011242 Functional Gain - SCLY ENSG00000132330 CDS Human protein_coding chr2:238991923 chr2:238991922 stopgain 0.076 1 20 hm7G_associated_SNPs_35517 0 0 1 0 1 SCLY chr2:238991889 3'AG 238991889 Downstream 34bp 32651 chr1 150477145 150477145 1 + C T LUAD 150477146 + 150477126 150477166 41 GCGTCCAGTCCTCATTCACCGAGCAGTGCTCGGTTCTGTGG GCGTCCAGTCCTCATTCACTGAGCAGTGCTCGGTTCTGTGG < 41bp 0.537964036407771 0.74080278859927 NA NA prediction 0.405677504382997 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477146 chr1:150477145 stopgain 0.994 1 20 hm7G_associated_SNPs_35518 1 0 1 0 2 TARS2 chr1:150477108 3'AG 150477108 Downstream 38bp 32652 chr1 150477145 150477145 1 + C T LUAD 150477146 + 150477126 150477166 41 GCGTCCAGTCCTCATTCACCGAGCAGTGCTCGGTTCTGTGG GCGTCCAGTCCTCATTCACTGAGCAGTGCTCGGTTCTGTGG < 41bp 0.537964036407771 0.74080278859927 NA NA prediction 0.405677504382997 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150477146 chr1:150477145 stopgain 0.994 1 20 hm7G_associated_SNPs_35518 1 0 1 0 2 TARS2 chr1:150477209 5'GT 150477209 Upstream 65bp 32653 chr9 35607377 35607377 1 + C T COAD 35607378 + 35607358 35607398 41 CCGCTGTCGTGGGTGACTTCGGGCTGGCCGAAAAGATTCCT CCGCTGTCGTGGGTGACTTTGGGCTGGCCGAAAAGATTCCT < 41bp 0.545136586866207 0.747974710681322 NA NA prediction 0.405676247630229 Functional Gain - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607378 chr9:35607377 synonymous SNV . 0 20 hm7G_associated_SNPs_35519 0 0 1 0 2 TESK1 chr9:35607324 3'AG 35607324 Downstream 54bp 32654 chr9 35607377 35607377 1 + C T COAD 35607378 + 35607358 35607398 41 CCGCTGTCGTGGGTGACTTCGGGCTGGCCGAAAAGATTCCT CCGCTGTCGTGGGTGACTTTGGGCTGGCCGAAAAGATTCCT < 41bp 0.545136586866207 0.747974710681322 NA NA prediction 0.405676247630229 Functional Gain - TESK1 ENSG00000107140 CDS Human protein_coding chr9:35607378 chr9:35607377 synonymous SNV . 0 20 hm7G_associated_SNPs_35519 0 0 1 0 2 TESK1 chr9:35607406 5'GT 35607406 Upstream 30bp 32655 chr6 35745305 35745305 1 + G A rs111605439 35745306 + 35745286 35745326 41 CCTCATGGACTTGGACTCCGGTGGAGCCTTCTGTGCCCCCA CCTCATGGACTTGGACTCCAGTGGAGCCTTCTGTGCCCCCA < 41bp 0.555219726463997 0.758056552734811 NA NA prediction 0.405673652541629 Functional Gain - CLPSL2 ENSG00000196748 CDS Human protein_coding chr6:35745306 chr6:35745305 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_35520 0 0 0 0 2 CLPSL2 chr6:35745236 3'AG 35745236 Downstream 70bp 32656 chr6 35745305 35745305 1 + G A rs111605439 35745306 + 35745286 35745326 41 CCTCATGGACTTGGACTCCGGTGGAGCCTTCTGTGCCCCCA CCTCATGGACTTGGACTCCAGTGGAGCCTTCTGTGCCCCCA < 41bp 0.555219726463997 0.758056552734811 NA NA prediction 0.405673652541629 Functional Gain - CLPSL2 ENSG00000196748 CDS Human protein_coding chr6:35745306 chr6:35745305 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_35520 0 0 0 0 2 CLPSL2 chr6:35745358 5'GT 35745358 Upstream 54bp 32657 chr11 122678879 122678879 1 + C T UCEC 122678880 + 122678860 122678900 41 GGACTTCGTACAAATGGTCCGAAAGGTAATTCATTCTCGTA GGACTTCGTACAAATGGTCTGAAAGGTAATTCATTCTCGTA < 41bp 0.524208099767845 0.72704435077708 NA NA prediction 0.40567250201847 Functional Gain - UBASH3B ENSG00000154127 CDS Human protein_coding chr11:122678880 chr11:122678879 stopgain 1.000 1 20 hm7G_associated_SNPs_35521 0 0 0 0 1 UBASH3B chr11:122678884 5'GT 122678884 Upstream 6bp 32658 chr15 41106236 41106236 1 + C T UCEC 41106237 + 41106217 41106257 41 CCCTACGCTGCGCTGGCTGCGATGGGGACCTCTTCTGTGCC CCCTACGCTGCGCTGGCTGTGATGGGGACCTCTTCTGTGCC < 41bp 0.527095645451252 0.729931234434702 NA NA prediction 0.4056711779669 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41106237 chr15:41106236 synonymous SNV . 0 20 hm7G_associated_SNPs_35522 0 0 1 0 2 ZFYVE19 chr15:41106141 3'AG 41106141 Downstream 96bp 32659 chr15 41106236 41106236 1 + C T UCEC 41106237 + 41106217 41106257 41 CCCTACGCTGCGCTGGCTGCGATGGGGACCTCTTCTGTGCC CCCTACGCTGCGCTGGCTGTGATGGGGACCTCTTCTGTGCC < 41bp 0.527095645451252 0.729931234434702 NA NA prediction 0.4056711779669 Functional Gain - ZFYVE19 ENSG00000166140 CDS Human protein_coding chr15:41106237 chr15:41106236 synonymous SNV . 0 20 hm7G_associated_SNPs_35522 0 0 1 0 2 ZFYVE19 chr15:41106268 5'GT 41106268 Upstream 33bp 32660 chr11 71711469 71711469 1 + C T rs141137180 71711470 + 71711450 71711490 41 GTCAGAGCCACACCTGTCTCGCAGACCACCACAGCTGCCAC GTCAGAGCCACACCTGTCTTGCAGACCACCACAGCTGCCAC < 41bp 0.519103642722373 0.721938980579243 NA NA prediction 0.405670675713741 Functional Gain - IL18BP ENSG00000137496 CDS Human protein_coding chr11:71711470 chr11:71711469 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_35523 0 0 0 0 1 IL18BP chr11:71711397 3'AG 71711397 Downstream 73bp 32661 chr19 45854575 45854575 1 + G A STAD 45854576 + 45854556 45854596 41 CACCTGGACAAGGCCCCTCGGACCCTCAGCGCCAGCACCCA CACCTGGACAAGGCCCCTCAGACCCTCAGCGCCAGCACCCA < 41bp 0.558933598655499 0.761766499779391 NA NA prediction 0.405665802247783 Functional Gain - KLC3 ENSG00000104892 CDS Human protein_coding chr19:45854576 chr19:45854575 nonsynonymous SNV 0.392 4 20 hm7G_associated_SNPs_35524 0 0 0 0 1 KLC3 chr19:45854544 3'AG 45854544 Downstream 32bp 32662 chr22 32879950 32879950 1 + G T UCEC 32879951 + 32879931 32879971 41 GCATATGGCAGAGGGCACAGGTTTCTATCCCTCAGAACCCA GCATATGGCAGAGGGCACATGTTTCTATCCCTCAGAACCCA < 41bp 0.362291460323712 0.702831929975826 NA NA prediction 0.405663859951652 Functional Gain - FBXO7 ENSG00000100225 CDS Human protein_coding chr22:32879951 chr22:32879950 nonsynonymous SNV 0.364 0 20 hm7G_associated_SNPs_35525 0 0 1 0 1 FBXO7 chr22:32879884 3'AG 32879884 Downstream 67bp 32663 chr22 32217539 32217539 1 + C T rs16989528 32217540 + 32217520 32217560 41 CAGACCCGACAGAATATGGCGGAGCTACAAGGCAGCGGGCA CAGACCCGACAGAATATGGTGGAGCTACAAGGCAGCGGGCA < 41bp 0.524224580391692 0.727054180991399 NA NA prediction 0.405659201199414 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32217540 chr22:32217539 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_35527 2 0 1 0 2 DEPDC5 chr22:32217488 3'AG 32217488 Downstream 52bp 32664 chr22 32217539 32217539 1 + C T rs16989528 32217540 + 32217520 32217560 41 CAGACCCGACAGAATATGGCGGAGCTACAAGGCAGCGGGCA CAGACCCGACAGAATATGGTGGAGCTACAAGGCAGCGGGCA < 41bp 0.524224580391692 0.727054180991399 NA NA prediction 0.405659201199414 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32217540 chr22:32217539 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_35527 2 0 1 0 2 DEPDC5 chr22:32217623 5'GT 32217623 Upstream 85bp 32665 chr18 34205531 34205531 1 + C T COAD 34205532 + 34205512 34205552 41 GCCACCCCCCAGTGGGTGCCGGGACCGGAGGAGGGCCAGCG GCCACCCCCCAGTGGGTGCTGGGACCGGAGGAGGGCCAGCG < 41bp 0.522386931606068 0.725214942374543 NA NA prediction 0.40565602153695 Functional Gain - FHOD3 ENSG00000134775 CDS Human protein_coding chr18:34205532 chr18:34205531 nonsynonymous SNV 0.960 4 20 hm7G_associated_SNPs_35529 0 0 0 0 1 FHOD3 chr18:34205474 3'AG 34205474 Downstream 58bp 32666 chr12 122677363 122677363 1 + C T GBM 122677364 + 122677344 122677384 41 AGGTCGTGGAAGACGTCATCGAAGACATTGTTGAAGAGGTT AGGTCGTGGAAGACGTCATTGAAGACATTGTTGAAGAGGTT < 41bp 0.532354474028319 0.735180655084393 NA NA prediction 0.405652362112148 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122677364 chr12:122677363 synonymous SNV . 0 20 hm7G_associated_SNPs_35532 0 0 0 0 1 LRRC43 chr12:122677292 3'AG 122677292 Downstream 72bp 32667 chr11 128677123 128677123 1 + G A SKCM 128677124 + 128677104 128677144 41 AGTAAGAATACAGAGCAACGGCCCCAGCCAGGTACCTGCCC AGTAAGAATACAGAGCAACAGCCCCAGCCAGGTACCTGCCC < 41bp 0.505499140218371 0.708325159430513 NA NA prediction 0.405652038424283 Functional Gain - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128677124 chr11:128677123 nonsynonymous SNV 0.825 1 20 hm7G_associated_SNPs_35533 0 0 0 0 2 FLI1 chr11:128677075 3'AG 128677075 Downstream 49bp 32668 chr11 128677123 128677123 1 + G A SKCM 128677124 + 128677104 128677144 41 AGTAAGAATACAGAGCAACGGCCCCAGCCAGGTACCTGCCC AGTAAGAATACAGAGCAACAGCCCCAGCCAGGTACCTGCCC < 41bp 0.505499140218371 0.708325159430513 NA NA prediction 0.405652038424283 Functional Gain - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128677124 chr11:128677123 nonsynonymous SNV 0.825 1 20 hm7G_associated_SNPs_35533 0 0 0 0 2 FLI1 chr11:128677134 5'GT 128677134 Upstream 12bp 32669 chr19 49867912 49867912 1 + C T rs116223719 49867913 + 49867893 49867933 41 CTACCCTGGTGATCCCCTCCGCTGCAGCTCCTATCCATGAT CTACCCTGGTGATCCCCTCTGCTGCAGCTCCTATCCATGAT < 41bp 0.527904859530926 0.730730817653533 NA NA prediction 0.405651916245215 Functional Gain - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49867913 chr19:49867912 synonymous SNV . 0 20 hm7G_associated_SNPs_35534 0 0 0 0 2 DKKL1 chr19:49867839 3'AG 49867839 Downstream 74bp 32670 chr19 49867912 49867912 1 + C T rs116223719 49867913 + 49867893 49867933 41 CTACCCTGGTGATCCCCTCCGCTGCAGCTCCTATCCATGAT CTACCCTGGTGATCCCCTCTGCTGCAGCTCCTATCCATGAT < 41bp 0.527904859530926 0.730730817653533 NA NA prediction 0.405651916245215 Functional Gain - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49867913 chr19:49867912 synonymous SNV . 0 20 hm7G_associated_SNPs_35534 0 0 0 0 2 DKKL1 chr19:49868011 5'GT 49868011 Upstream 100bp 32671 chr4 89349828 89349828 1 + C T UCEC 89349829 + 89349809 89349849 41 ATTTATACTTAGAGTCAGACGAAGTCGCCTGGTTAAAGATG ATTTATACTTAGAGTCAGATGAAGTCGCCTGGTTAAAGATG < 41bp 0.487766233662446 0.7028253956937 NA NA prediction 0.4056507913874 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89349829 chr4:89349828 stopgain 0.708 1 20 hm7G_associated_SNPs_35536 0 0 0 0 2 HERC6 chr4:89349732 3'AG 89349732 Downstream 97bp 32672 chr4 89349828 89349828 1 + C T UCEC 89349829 + 89349809 89349849 41 ATTTATACTTAGAGTCAGACGAAGTCGCCTGGTTAAAGATG ATTTATACTTAGAGTCAGATGAAGTCGCCTGGTTAAAGATG < 41bp 0.487766233662446 0.7028253956937 NA NA prediction 0.4056507913874 Functional Gain - HERC6 ENSG00000138642 CDS Human protein_coding chr4:89349829 chr4:89349828 stopgain 0.708 1 20 hm7G_associated_SNPs_35536 0 0 0 0 2 HERC6 chr4:89349902 5'GT 89349902 Upstream 75bp 32673 chr12 112915480 112915480 1 + C T UCEC 112915481 + 112915461 112915501 41 ATACCAGGGTTGTCCTACACGATGGTGATCCCAATGAGCCT ATACCAGGGTTGTCCTACATGATGGTGATCCCAATGAGCCT < 41bp 0.530517204810917 0.73334018414676 NA NA prediction 0.405645958671686 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915481 chr12:112915480 synonymous SNV . 0 20 hm7G_associated_SNPs_35538 2 0 1 0 2 PTPN11 chr12:112915455 3'AG 112915455 Downstream 26bp 32674 chr12 112915480 112915480 1 + C T UCEC 112915481 + 112915461 112915501 41 ATACCAGGGTTGTCCTACACGATGGTGATCCCAATGAGCCT ATACCAGGGTTGTCCTACATGATGGTGATCCCAATGAGCCT < 41bp 0.530517204810917 0.73334018414676 NA NA prediction 0.405645958671686 Functional Gain - PTPN11 ENSG00000179295 CDS Human protein_coding chr12:112915481 chr12:112915480 synonymous SNV . 0 20 hm7G_associated_SNPs_35538 2 0 1 0 2 PTPN11 chr12:112915534 5'GT 112915534 Upstream 55bp 32675 chr10 85961670 85961670 1 + C T BLCA 85961671 + 85961651 85961691 41 CCCACTACATCACCGTGGTCGCCAAGGTAACACAGCAGGAC CCCACTACATCACCGTGGTTGCCAAGGTAACACAGCAGGAC < 41bp 0.49422816567752 0.702822920286847 NA NA prediction 0.405645840573694 Functional Gain - CDHR1 ENSG00000148600 CDS Human protein_coding chr10:85961671 chr10:85961670 synonymous SNV . 0 20 hm7G_associated_SNPs_35539 0 0 0 0 1 CDHR1 chr10:85961676 5'GT 85961676 Upstream 7bp 32676 chr17 40939505 40939505 1 + G A SKCM 40939506 + 40939486 40939526 41 CTGAGCCTGAGGAGCCAGAGGCAGACCAGCACCAGCCCTTC CTGAGCCTGAGGAGCCAGAAGCAGACCAGCACCAGCCCTTC < 41bp 0.588379738457162 0.791200135958209 NA NA prediction 0.405640795002094 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40939506 chr17:40939505 synonymous SNV . 0 20 hm7G_associated_SNPs_35541 0 0 0 0 1 WNK4 chr17:40939560 5'GT 40939560 Upstream 56bp 32677 chr4 2928373 2928373 1 + C T UCEC 2928374 + 2928354 2928394 41 CTGCGTCACAAGCAGGAGACGGATGCGCTAGAGAGTACCTG CTGCGTCACAAGCAGGAGATGGATGCGCTAGAGAGTACCTG < 41bp 0.511689785196452 0.714508982284158 NA NA prediction 0.405638394175412 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2928374 chr4:2928373 synonymous SNV . 0 20 hm7G_associated_SNPs_35542 0 0 1 0 2 ADD1 chr4:2928369 3'AG 2928369 Downstream 5bp 32678 chr4 2928373 2928373 1 + C T UCEC 2928374 + 2928354 2928394 41 CTGCGTCACAAGCAGGAGACGGATGCGCTAGAGAGTACCTG CTGCGTCACAAGCAGGAGATGGATGCGCTAGAGAGTACCTG < 41bp 0.511689785196452 0.714508982284158 NA NA prediction 0.405638394175412 Functional Gain - ADD1 ENSG00000087274 CDS Human protein_coding chr4:2928374 chr4:2928373 synonymous SNV . 0 20 hm7G_associated_SNPs_35542 0 0 1 0 2 ADD1 chr4:2928402 5'GT 2928402 Upstream 30bp 32679 chr2 109432452 109432452 1 + C T rs138760335 109432453 + 109432433 109432473 41 GTCTTCATGGACTGGATTTCGGATCATCATCTTAGCAAAGT GTCTTCATGGACTGGATTTTGGATCATCATCTTAGCAAAGT < 41bp 0.514409449558824 0.717228513497209 NA NA prediction 0.40563812787677 Functional Gain - CCDC138 ENSG00000163006 CDS Human protein_coding chr2:109432453 chr2:109432452 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_35543 0 0 1 0 1 CCDC138 chr2:109432397 3'AG 109432397 Downstream 56bp 32680 chr22 24123434 24123434 1 + C T CESC 24123435 + 24123415 24123455 41 TGACGCGGTCTCCACCATCCGAGGCGAGCTCTTTTTCTTCA TGACGCGGTCTCCACCATCTGAGGCGAGCTCTTTTTCTTCA < 41bp 0.530433631903866 0.73325222354606 NA NA prediction 0.405637183284388 Functional Gain - MMP11 ENSG00000099953 CDS Human protein_coding chr22:24123435 chr22:24123434 stopgain 0.994 1 20 hm7G_associated_SNPs_35544 0 0 0 0 1 MMP11 chr22:24123380 3'AG 24123380 Downstream 55bp 32681 chrX 150155658 150155658 1 + C T UCEC 150155659 + 150155639 150155679 41 AGATCAAATCCACAAACCCCGGCATCTCTATTGGAGACGTG AGATCAAATCCACAAACCCTGGCATCTCTATTGGAGACGTG < 41bp 0.509476545564141 0.712294652666388 NA NA prediction 0.405636214204494 Functional Gain - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150155659 chrX:150155658 synonymous SNV . 0 20 hm7G_associated_SNPs_35546 0 0 1 0 1 HMGB3 chrX:150155601 3'AG 150155601 Downstream 58bp 32682 chr20 47569409 47569409 1 + G T LUSC 47569410 + 47569390 47569430 41 ACGTCATTTTCACCCGCATGGAAAACCAAGTGGTGAGTGAC ACGTCATTTTCACCCGCATTGAAAACCAAGTGGTGAGTGAC < 41bp 0.36145423404573 0.70281749255106 NA NA prediction 0.405634985102119 Functional Gain - ARFGEF2 ENSG00000124198 CDS Human protein_coding chr20:47569410 chr20:47569409 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_35547 0 0 1 0 1 ARFGEF2 chr20:47569421 5'GT 47569421 Upstream 13bp 32683 chr10 99337626 99337626 1 + G A rs150127698 99337627 + 99337607 99337647 41 GGAGGATGAGAAGCACCACGGGGCTCAGAGTGCAGCCCTGC GGAGGATGAGAAGCACCACAGGGCTCAGAGTGCAGCCCTGC < 41bp 0.605976914878643 0.808793174294906 NA NA prediction 0.405632518832526 Functional Gain - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99337627 chr10:99337626 nonsynonymous SNV 0.415 0 20 hm7G_associated_SNPs_35548 0 0 0 0 2 ANKRD2 chr10:99337557 3'AG 99337557 Downstream 70bp 32684 chr10 99337626 99337626 1 + G A rs150127698 99337627 + 99337607 99337647 41 GGAGGATGAGAAGCACCACGGGGCTCAGAGTGCAGCCCTGC GGAGGATGAGAAGCACCACAGGGCTCAGAGTGCAGCCCTGC < 41bp 0.605976914878643 0.808793174294906 NA NA prediction 0.405632518832526 Functional Gain - ANKRD2 ENSG00000165887 CDS Human protein_coding chr10:99337627 chr10:99337626 nonsynonymous SNV 0.415 0 20 hm7G_associated_SNPs_35548 0 0 0 0 2 ANKRD2 chr10:99337658 5'GT 99337658 Upstream 33bp 32685 chr10 101567939 101567939 1 + C T UCEC 101567940 + 101567920 101567960 41 TACCCTCTTCAATATCCTGCGCTTTCCCCTGAGCATGCTTC TACCCTCTTCAATATCCTGTGCTTTCCCCTGAGCATGCTTC < 41bp 0.486173877329658 0.702816041091856 NA NA prediction 0.405632082183711 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101567940 chr10:101567939 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35550 0 0 0 0 2 ABCC2 chr10:101567840 3'AG 101567840 Downstream 100bp 32686 chr10 101567939 101567939 1 + C T UCEC 101567940 + 101567920 101567960 41 TACCCTCTTCAATATCCTGCGCTTTCCCCTGAGCATGCTTC TACCCTCTTCAATATCCTGTGCTTTCCCCTGAGCATGCTTC < 41bp 0.486173877329658 0.702816041091856 NA NA prediction 0.405632082183711 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101567940 chr10:101567939 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35550 0 0 0 0 2 ABCC2 chr10:101567986 5'GT 101567986 Upstream 48bp 32687 chr9 123937350 123937350 1 + C T UCEC 123937351 + 123937331 123937371 41 AGTATTAATTAAAGGAAAGCGGCAGACAGAGGGCACTTTAC AGTATTAATTAAAGGAAAGTGGCAGACAGAGGGCACTTTAC < 41bp 0.496543754122877 0.702815011577311 NA NA prediction 0.405630023154622 Functional Gain - CNTRL ENSG00000119397 CDS Human protein_coding chr9:123937351 chr9:123937350 nonsynonymous SNV 0.959 2 20 hm7G_associated_SNPs_35552 0 0 0 0 1 CNTRL chr9:123937296 3'AG 123937296 Downstream 55bp 32688 chr19 18239690 18239690 1 + C T CESC 18239691 + 18239671 18239711 41 CCTAGAGCCGCGCCCTGGTCGGCCAGTCACGGAGGAAGCCA CCTAGAGCCGCGCCCTGGTTGGCCAGTCACGGAGGAAGCCA < 41bp 0.536035925297457 0.738850452868198 NA NA prediction 0.405629055141482 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18239691 chr19:18239690 synonymous SNV . 0 20 hm7G_associated_SNPs_35553 0 0 1 0 2 MAST3 chr19:18239676 3'AG 18239676 Downstream 15bp 32689 chr19 18239690 18239690 1 + C T CESC 18239691 + 18239671 18239711 41 CCTAGAGCCGCGCCCTGGTCGGCCAGTCACGGAGGAAGCCA CCTAGAGCCGCGCCCTGGTTGGCCAGTCACGGAGGAAGCCA < 41bp 0.536035925297457 0.738850452868198 NA NA prediction 0.405629055141482 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18239691 chr19:18239690 synonymous SNV . 0 20 hm7G_associated_SNPs_35553 0 0 1 0 2 MAST3 chr19:18239761 5'GT 18239761 Upstream 72bp 32690 chr1 15772173 15772173 1 + C T CESC 15772174 + 15772154 15772194 41 CGTCAGCTTTGGCTCCCGGCGGGGCTGCAACACCCGCAAGA CGTCAGCTTTGGCTCCCGGTGGGGCTGCAACACCCGCAAGA < 41bp 0.542019976360096 0.744834475607049 NA NA prediction 0.405628998493906 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15772174 chr1:15772173 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_35554 0 0 0 0 2 CTRC chr1:15772092 3'AG 15772092 Downstream 82bp 32691 chr1 15772173 15772173 1 + C T CESC 15772174 + 15772154 15772194 41 CGTCAGCTTTGGCTCCCGGCGGGGCTGCAACACCCGCAAGA CGTCAGCTTTGGCTCCCGGTGGGGCTGCAACACCCGCAAGA < 41bp 0.542019976360096 0.744834475607049 NA NA prediction 0.405628998493906 Functional Gain - CTRC ENSG00000162438 CDS Human protein_coding chr1:15772174 chr1:15772173 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_35554 0 0 0 0 2 CTRC chr1:15772244 5'GT 15772244 Upstream 72bp 32692 chr9 103035213 103035213 1 + G T LUSC 103035214 + 103035194 103035234 41 CCAGTTCATGTTGGAGCACGGTGCCCTGTCCATCGCAGCCA CCAGTTCATGTTGGAGCACTGTGCCCTGTCCATCGCAGCCA < 41bp 0.360486259000676 0.702813315033227 NA NA prediction 0.405626630066453 Functional Gain - INVS ENSG00000119509 CDS Human protein_coding chr9:103035214 chr9:103035213 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35556 0 0 1 0 1 INVS chr9:103035146 3'AG 103035146 Downstream 68bp 32693 chr19 55594883 55594883 1 + G A UCEC 55594884 + 55594864 55594904 41 CAGCACGAGCGGAGGCGCCGGCAGGTGACCCAAGCGACACA CAGCACGAGCGGAGGCGCCAGCAGGTGACCCAAGCGACACA < 41bp 0.484443203259298 0.702811490385023 NA NA prediction 0.405622980770047 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55594884 chr19:55594883 nonsynonymous SNV 0.928 0 20 hm7G_associated_SNPs_35561 0 0 0 0 1 EPS8L1 chr19:55594887 5'GT 55594887 Upstream 5bp 32694 chr18 29099849 29099849 1 + C T LGG 29099850 + 29099830 29099870 41 GCGCCTGGATCACCGCCCCCGTGGCTCTTCGGGAGGGAGAG GCGCCTGGATCACCGCCCCTGTGGCTCTTCGGGAGGGAGAG < 41bp 0.540667170030013 0.743478248136569 NA NA prediction 0.405622156213114 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099850 chr18:29099849 synonymous SNV . 0 20 hm7G_associated_SNPs_35562 0 0 1 0 2 DSG2 chr18:29099766 3'AG 29099766 Downstream 84bp 32695 chr18 29099849 29099849 1 + C T LGG 29099850 + 29099830 29099870 41 GCGCCTGGATCACCGCCCCCGTGGCTCTTCGGGAGGGAGAG GCGCCTGGATCACCGCCCCTGTGGCTCTTCGGGAGGGAGAG < 41bp 0.540667170030013 0.743478248136569 NA NA prediction 0.405622156213114 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29099850 chr18:29099849 synonymous SNV . 0 20 hm7G_associated_SNPs_35562 0 0 1 0 2 DSG2 chr18:29099900 5'GT 29099900 Upstream 52bp 32696 chr6 41753227 41753227 1 + C T LGG 41753228 + 41753208 41753248 41 ATGATGGACAACTCTACTGCGGCCGTCATCATGCAGAGTTG ATGATGGACAACTCTACTGTGGCCGTCATCATGCAGAGTTG < 41bp 0.532836530599559 0.735644667333616 NA NA prediction 0.405616273468113 Functional Gain - PRICKLE4 ENSG00000124593 CDS Human protein_coding chr6:41753228 chr6:41753227 synonymous SNV . 0 20 hm7G_associated_SNPs_35563 0 0 0 0 1 PRICKLE4 chr6:41753278 5'GT 41753278 Upstream 52bp 32697 chr6 7861758 7861758 1 + C T UCEC 7861759 + 7861739 7861779 41 TGGCTGGAATTTGACATCACGGCCACTAGCAATCTGTGGGT TGGCTGGAATTTGACATCATGGCCACTAGCAATCTGTGGGT < 41bp 0.528766405569947 0.731574305269666 NA NA prediction 0.405615799399436 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7861759 chr6:7861758 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_35564 0 0 0 0 2 BMP6 chr6:7861684 3'AG 7861684 Downstream 75bp 32698 chr6 7861758 7861758 1 + C T UCEC 7861759 + 7861739 7861779 41 TGGCTGGAATTTGACATCACGGCCACTAGCAATCTGTGGGT TGGCTGGAATTTGACATCATGGCCACTAGCAATCTGTGGGT < 41bp 0.528766405569947 0.731574305269666 NA NA prediction 0.405615799399436 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7861759 chr6:7861758 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_35564 0 0 0 0 2 BMP6 chr6:7861832 5'GT 7861832 Upstream 75bp 32699 chr19 36510151 36510151 1 + C T STAD 36510152 + 36510132 36510172 41 TCAGGTTCGTCCAGCTCCACGCCCACCCACTGGCCGCTGGC TCAGGTTCGTCCAGCTCCATGCCCACCCACTGGCCGCTGGC < 41bp 0.50710142276009 0.709908424896052 NA NA prediction 0.405614004271925 Functional Gain - CLIP3;LOC101927572 ENSG00000105270 CDS Human protein_coding chr19:36510152 chr19:36510151 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35565 0 0 0 0 1 CLIP3;LOC101927572 chr19:36510136 3'AG 36510136 Downstream 16bp 32700 chr11 74915493 74915493 1 + C T KIRP 74915494 + 74915474 74915514 41 CAGGTTCTGTGATCTGCTTCGCCTTAGTTTTGGCTGTCCTG CAGGTTCTGTGATCTGCTTTGCCTTAGTTTTGGCTGTCCTG < 41bp 0.508839797962313 0.711644982614791 NA NA prediction 0.405610369304956 Functional Gain - SLCO2B1 ENSG00000137491 CDS Human protein_coding chr11:74915494 chr11:74915493 synonymous SNV . 0 20 hm7G_associated_SNPs_35567 0 0 1 0 1 SLCO2B1 chr11:74915445 3'AG 74915445 Downstream 49bp 32701 chr7 129951897 129951897 1 + C T LUAD 129951898 + 129951878 129951918 41 GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGT GACAAGGTGGCGAGGCTTGTGGCCAAAGCTCTGGCTTCTGT < 41bp 0.547043268913353 0.749848102248315 NA NA prediction 0.405609666669924 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129951898 chr7:129951897 nonsynonymous SNV 0.012 4 20 hm7G_associated_SNPs_35568 0 0 0 0 2 CPA4 chr7:129951878 3'AG 129951878 Downstream 20bp 32702 chr7 129951897 129951897 1 + C T LUAD 129951898 + 129951878 129951918 41 GACAAGGTGGCGAGGCTTGCGGCCAAAGCTCTGGCTTCTGT GACAAGGTGGCGAGGCTTGTGGCCAAAGCTCTGGCTTCTGT < 41bp 0.547043268913353 0.749848102248315 NA NA prediction 0.405609666669924 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129951898 chr7:129951897 nonsynonymous SNV 0.012 4 20 hm7G_associated_SNPs_35568 0 0 0 0 2 CPA4 chr7:129951962 5'GT 129951962 Upstream 66bp 32703 chr19 32968457 32968457 1 + C T UCEC 32968458 + 32968438 32968478 41 CCAAGAAAGGCTGTGTTTGCGGGAAGCATGCAGTTGCTGGC CCAAGAAAGGCTGTGTTTGTGGGAAGCATGCAGTTGCTGGC < 41bp 0.52757280940065 0.730375479397338 NA NA prediction 0.405605339993376 Functional Gain - DPY19L3 ENSG00000178904 CDS Human protein_coding chr19:32968458 chr19:32968457 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_35570 0 0 1 0 1 DPY19L3 chr19:32968428 3'AG 32968428 Downstream 30bp 32704 chr1 151506463 151506463 1 + C T READ 151506464 + 151506444 151506484 41 TGCCCAGATCCAGAGGCTGCGGCAGGCCCTGCAGGCATCCC TGCCCAGATCCAGAGGCTGTGGCAGGCCCTGCAGGCATCCC < 41bp 0.533030925753747 0.73583293739079 NA NA prediction 0.405604023274085 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151506464 chr1:151506463 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_35572 0 0 0 0 1 CGN chr1:151506451 3'AG 151506451 Downstream 13bp 32705 chr17 40947498 40947498 1 + G A SKCM 40947499 + 40947479 40947519 41 GCCTCACCACCTCCTGCTCGGCCCCTCCCAGGGGAAGCCAG GCCTCACCACCTCCTGCTCAGCCCCTCCCAGGGGAAGCCAG < 41bp 0.469309740819184 0.702801733306994 NA NA prediction 0.405603466613988 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40947499 chr17:40947498 nonsynonymous SNV 0.155 0 20 hm7G_associated_SNPs_35573 0 0 1 0 2 WNK4 chr17:40947479 3'AG 40947479 Downstream 20bp 32706 chr17 40947498 40947498 1 + G A SKCM 40947499 + 40947479 40947519 41 GCCTCACCACCTCCTGCTCGGCCCCTCCCAGGGGAAGCCAG GCCTCACCACCTCCTGCTCAGCCCCTCCCAGGGGAAGCCAG < 41bp 0.469309740819184 0.702801733306994 NA NA prediction 0.405603466613988 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40947499 chr17:40947498 nonsynonymous SNV 0.155 0 20 hm7G_associated_SNPs_35573 0 0 1 0 2 WNK4 chr17:40947539 5'GT 40947539 Upstream 42bp 32707 chr10 11797554 11797554 1 + G A LAML 11797555 + 11797535 11797575 41 CACTCCTGGGGTGAACGTCGGGCTCTTCTGTTCTACCCCTG CACTCCTGGGGTGAACGTCAGGCTCTTCTGTTCTACCCCTG < 41bp 0.56608841713679 0.768884931142577 NA NA prediction 0.405593028011573 Functional Gain - ECHDC3 ENSG00000134463 CDS Human protein_coding chr10:11797555 chr10:11797554 nonsynonymous SNV 0.494 5 20 hm7G_associated_SNPs_35574 0 0 1 0 1 ECHDC3 chr10:11797607 5'GT 11797607 Upstream 54bp 32708 chr4 134084189 134084189 1 + G T LUAD 134084190 + 134084170 134084210 41 GCTCTGGGCCACTCAGATCGGTGCTGGATGCCTTCTTTTGT GCTCTGGGCCACTCAGATCTGTGCTGGATGCCTTCTTTTGT < 41bp 0.372902501088771 0.702795700664165 NA NA prediction 0.405591401328329 Functional Gain - PCDH10 ENSG00000138650 CDS Human protein_coding chr4:134084190 chr4:134084189 nonsynonymous SNV 0.953 3 20 hm7G_associated_SNPs_35575 0 0 0 0 1 PCDH10 chr4:134084132 3'AG 134084132 Downstream 58bp 32709 chr18 61558795 61558795 1 + G A SKCM 61558796 + 61558776 61558816 41 GGAGCATCTCGTCCACCATGGCCATGGTCTACATGGGCTCC GGAGCATCTCGTCCACCATAGCCATGGTCTACATGGGCTCC < 41bp 0.554005081845686 0.756799736771864 NA NA prediction 0.405589309852355 Functional Gain - SERPINB2 ENSG00000197632 CDS Human protein_coding chr18:61558796 chr18:61558795 nonsynonymous SNV 0.954 1 20 hm7G_associated_SNPs_35576 0 0 0 0 1 SERPINB2 chr18:61558846 5'GT 61558846 Upstream 52bp 32710 chr1 237054566 237054566 1 + C T rs560615373 237054567 + 237054547 237054587 41 AAGACGACATTCACCTGTACGCAGAGGCTGCTGTGCCCCAG AAGACGACATTCACCTGTATGCAGAGGCTGCTGTGCCCCAG < 41bp 0.548930240100759 0.751724824642929 NA NA prediction 0.405589169084341 Functional Gain - MTR ENSG00000116984 CDS Human protein_coding chr1:237054567 chr1:237054566 synonymous SNV . 0 20 hm7G_associated_SNPs_35577 0 0 1 0 1 MTR chr1:237054629 5'GT 237054629 Upstream 64bp 32711 chr13 49705294 49705294 1 + C T GBM 49705295 + 49705275 49705315 41 TATTGAAGACAATGGTGTTCGAAGAGTTGTCGTGGTCCCTC TATTGAAGACAATGGTGTTTGAAGAGTTGTCGTGGTCCCTC < 41bp 0.513582788485365 0.71637714104129 NA NA prediction 0.40558870511185 Functional Gain - FNDC3A ENSG00000102531 CDS Human protein_coding chr13:49705295 chr13:49705294 stopgain 1.000 1 20 hm7G_associated_SNPs_35578 0 0 1 0 1 FNDC3A chr13:49705273 3'AG 49705273 Downstream 22bp 32712 chr19 14023343 14023343 1 + G A CESC 14023344 + 14023324 14023364 41 GCTGTGTGTCCCTGCAGGCGGAGCTAAATGAGGTCCTTGGA GCTGTGTGTCCCTGCAGGCAGAGCTAAATGAGGTCCTTGGA < 41bp 0.517591150379129 0.720383882442327 NA NA prediction 0.405585464126396 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14023344 chr19:14023343 synonymous SNV . 0 20 hm7G_associated_SNPs_35579 0 0 1 0 2 CC2D1A chr19:14023341 3'AG 14023341 Downstream 3bp 32713 chr19 14023343 14023343 1 + G A CESC 14023344 + 14023324 14023364 41 GCTGTGTGTCCCTGCAGGCGGAGCTAAATGAGGTCCTTGGA GCTGTGTGTCCCTGCAGGCAGAGCTAAATGAGGTCCTTGGA < 41bp 0.517591150379129 0.720383882442327 NA NA prediction 0.405585464126396 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14023344 chr19:14023343 synonymous SNV . 0 20 hm7G_associated_SNPs_35579 0 0 1 0 2 CC2D1A chr19:14023406 5'GT 14023406 Upstream 64bp 32714 chr10 105174066 105174066 1 + C T SKCM 105174067 + 105174047 105174087 41 ACCTTAGATATCATGACATCGAACCTGGGGCAGTGGTAAAG ACCTTAGATATCATGACATTGAACCTGGGGCAGTGGTAAAG < 41bp 0.55556429600366 0.758353646281411 NA NA prediction 0.405578700555504 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174067 chr10:105174066 synonymous SNV . 0 20 hm7G_associated_SNPs_35581 0 0 1 0 2 PDCD11 chr10:105174027 3'AG 105174027 Downstream 40bp 32715 chr10 105174066 105174066 1 + C T SKCM 105174067 + 105174047 105174087 41 ACCTTAGATATCATGACATCGAACCTGGGGCAGTGGTAAAG ACCTTAGATATCATGACATTGAACCTGGGGCAGTGGTAAAG < 41bp 0.55556429600366 0.758353646281411 NA NA prediction 0.405578700555504 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105174067 chr10:105174066 synonymous SNV . 0 20 hm7G_associated_SNPs_35581 0 0 1 0 2 PDCD11 chr10:105174087 5'GT 105174087 Upstream 22bp 32716 chr16 84482210 84482210 1 + C T COAD 84482211 + 84482191 84482231 41 ACTGCACCATGTACAACAACGGGGGCATCCCCCTGCCGCTG ACTGCACCATGTACAACAATGGGGGCATCCCCCTGCCGCTG < 41bp 0.489551816350655 0.702789238231802 NA NA prediction 0.405578476463603 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84482211 chr16:84482210 synonymous SNV . 0 20 hm7G_associated_SNPs_35582 0 0 0 0 2 ATP2C2 chr16:84482139 3'AG 84482139 Downstream 72bp 32717 chr16 84482210 84482210 1 + C T COAD 84482211 + 84482191 84482231 41 ACTGCACCATGTACAACAACGGGGGCATCCCCCTGCCGCTG ACTGCACCATGTACAACAATGGGGGCATCCCCCTGCCGCTG < 41bp 0.489551816350655 0.702789238231802 NA NA prediction 0.405578476463603 Functional Gain - ATP2C2 ENSG00000064270 CDS Human protein_coding chr16:84482211 chr16:84482210 synonymous SNV . 0 20 hm7G_associated_SNPs_35582 0 0 0 0 2 ATP2C2 chr16:84482295 5'GT 84482295 Upstream 86bp 32718 chr19 4219686 4219686 1 + G A UCEC 4219687 + 4219667 4219707 41 GGGGGCTACGGACCGAGGCGGAAAGGGCTCGCCAGGCCCAG GGGGGCTACGGACCGAGGCAGAAAGGGCTCGCCAGGCCCAG < 41bp 0.554943855959603 0.75773282683143 NA NA prediction 0.405577941743654 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4219687 chr19:4219686 synonymous SNV . 0 20 hm7G_associated_SNPs_35583 0 0 0 0 2 ANKRD24 chr19:4219588 3'AG 4219588 Downstream 99bp 32719 chr19 4219686 4219686 1 + G A UCEC 4219687 + 4219667 4219707 41 GGGGGCTACGGACCGAGGCGGAAAGGGCTCGCCAGGCCCAG GGGGGCTACGGACCGAGGCAGAAAGGGCTCGCCAGGCCCAG < 41bp 0.554943855959603 0.75773282683143 NA NA prediction 0.405577941743654 Functional Gain - ANKRD24 ENSG00000089847 CDS Human protein_coding chr19:4219687 chr19:4219686 synonymous SNV . 0 20 hm7G_associated_SNPs_35583 0 0 0 0 2 ANKRD24 chr19:4219755 5'GT 4219755 Upstream 70bp 32720 chrX 153696164 153696164 1 + C T STAD 153696165 + 153696145 153696185 41 CCTGCACATCTCGGCAGAGCGGGCGCTGACCCTACCGGCCA CCTGCACATCTCGGCAGAGTGGGCGCTGACCCTACCGGCCA < 41bp 0.514195244074244 0.716982681725106 NA NA prediction 0.405574875301725 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153696165 chrX:153696164 nonsynonymous SNV 0.713 3 20 hm7G_associated_SNPs_35586 0 0 0 0 1 PLXNA3 chrX:153696110 3'AG 153696110 Downstream 55bp 32721 chr16 88580859 88580859 1 + G T CESC 88580860 + 88580840 88580880 41 CCCGACTCAGCCTCGCCACGGGCCTGTCCTGGGGCCCGTTC CCCGACTCAGCCTCGCCACTGGCCTGTCCTGGGGCCCGTTC < 41bp 0.343337393385522 0.702787206766305 NA NA prediction 0.40557441353261 Functional Gain - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88580860 chr16:88580859 synonymous SNV . 0 20 hm7G_associated_SNPs_35587 0 0 0 0 2 ZFPM1 chr16:88580795 3'AG 88580795 Downstream 65bp 32722 chr16 88580859 88580859 1 + G T CESC 88580860 + 88580840 88580880 41 CCCGACTCAGCCTCGCCACGGGCCTGTCCTGGGGCCCGTTC CCCGACTCAGCCTCGCCACTGGCCTGTCCTGGGGCCCGTTC < 41bp 0.343337393385522 0.702787206766305 NA NA prediction 0.40557441353261 Functional Gain - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88580860 chr16:88580859 synonymous SNV . 0 20 hm7G_associated_SNPs_35587 0 0 0 0 2 ZFPM1 chr16:88580928 5'GT 88580928 Upstream 70bp 32723 chr12 53677911 53677911 1 + G A SKCM 53677912 + 53677892 53677932 41 ACATTGATCTCTGTCAGTCGGACCTGCAGCAGGTTCTGTTC ACATTGATCTCTGTCAGTCAGACCTGCAGCAGGTTCTGTTC < 41bp 0.522375000798103 0.725161604918369 NA NA prediction 0.405573208240533 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53677912 chr12:53677911 synonymous SNV . 0 20 hm7G_associated_SNPs_35588 0 0 1 0 2 ESPL1 chr12:53677842 3'AG 53677842 Downstream 70bp 32724 chr12 53677911 53677911 1 + G A SKCM 53677912 + 53677892 53677932 41 ACATTGATCTCTGTCAGTCGGACCTGCAGCAGGTTCTGTTC ACATTGATCTCTGTCAGTCAGACCTGCAGCAGGTTCTGTTC < 41bp 0.522375000798103 0.725161604918369 NA NA prediction 0.405573208240533 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53677912 chr12:53677911 synonymous SNV . 0 20 hm7G_associated_SNPs_35588 0 0 1 0 2 ESPL1 chr12:53677951 5'GT 53677951 Upstream 41bp 32725 chr2 149866673 149866673 1 + C T UCEC 149866674 + 149866654 149866694 41 CCGGGACAACGCAGACCTGCGCTGTGAACTGCCCAAGCTGG CCGGGACAACGCAGACCTGTGCTGTGAACTGCCCAAGCTGG < 41bp 0.528761123850321 0.731547000377016 NA NA prediction 0.40557175305339 Functional Gain - KIF5C ENSG00000168280 CDS Human protein_coding chr2:149866674 chr2:149866673 nonsynonymous SNV 0.988 5 20 hm7G_associated_SNPs_35589 0 0 1 0 1 KIF5C chr2:149866649 3'AG 149866649 Downstream 25bp 32726 chr17 14063251 14063251 1 + C T rs114521946 14063252 + 14063232 14063272 41 AAAGAACAGACCGCTGGTTCGTGGACAGATCAGGTAAAATC AAAGAACAGACCGCTGGTTTGTGGACAGATCAGGTAAAATC < 41bp 0.500866455211157 0.703649742968404 NA NA prediction 0.405566575514494 Functional Gain - COX10 ENSG00000006695 CDS Human protein_coding chr17:14063252 chr17:14063251 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35590 2 0 1 0 2 COX10 chr17:14063194 3'AG 14063194 Downstream 58bp 32727 chr17 14063251 14063251 1 + C T rs114521946 14063252 + 14063232 14063272 41 AAAGAACAGACCGCTGGTTCGTGGACAGATCAGGTAAAATC AAAGAACAGACCGCTGGTTTGTGGACAGATCAGGTAAAATC < 41bp 0.500866455211157 0.703649742968404 NA NA prediction 0.405566575514494 Functional Gain - COX10 ENSG00000006695 CDS Human protein_coding chr17:14063252 chr17:14063251 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35590 2 0 1 0 2 COX10 chr17:14063264 5'GT 14063264 Upstream 14bp 32728 chr4 25394002 25394002 1 + C T UCEC 25394003 + 25393983 25394023 41 TTTCTTACCTGAAGTAACTCGGATGGCCAGAAAGTTTACTC TTTCTTACCTGAAGTAACTTGGATGGCCAGAAAGTTTACTC < 41bp 0.534323602915831 0.737105914583904 NA NA prediction 0.405564623336145 Functional Gain - ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25394003 chr4:25394002 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35591 0 0 1 0 2 ANAPC4 chr4:25393960 3'AG 25393960 Downstream 43bp 32729 chr4 25394002 25394002 1 + C T UCEC 25394003 + 25393983 25394023 41 TTTCTTACCTGAAGTAACTCGGATGGCCAGAAAGTTTACTC TTTCTTACCTGAAGTAACTTGGATGGCCAGAAAGTTTACTC < 41bp 0.534323602915831 0.737105914583904 NA NA prediction 0.405564623336145 Functional Gain - ANAPC4 ENSG00000053900 CDS Human protein_coding chr4:25394003 chr4:25394002 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35591 0 0 1 0 2 ANAPC4 chr4:25394043 5'GT 25394043 Upstream 42bp 32730 chr21 45860722 45860722 1 + C T SKCM 45860723 + 45860703 45860743 41 ACACGGACAATGCCTGGATCGAGACGGTGGCCGTCAGCGTC ACACGGACAATGCCTGGATTGAGACGGTGGCCGTCAGCGTC < 41bp 0.520238424227477 0.723019889774605 NA NA prediction 0.405562931094256 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45860723 chr21:45860722 synonymous SNV . 0 20 hm7G_associated_SNPs_35592 0 0 0 0 2 TRPM2 chr21:45860672 3'AG 45860672 Downstream 51bp 32731 chr21 45860722 45860722 1 + C T SKCM 45860723 + 45860703 45860743 41 ACACGGACAATGCCTGGATCGAGACGGTGGCCGTCAGCGTC ACACGGACAATGCCTGGATTGAGACGGTGGCCGTCAGCGTC < 41bp 0.520238424227477 0.723019889774605 NA NA prediction 0.405562931094256 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45860723 chr21:45860722 synonymous SNV . 0 20 hm7G_associated_SNPs_35592 0 0 0 0 2 TRPM2 chr21:45860788 5'GT 45860788 Upstream 67bp 32732 chr9 95381833 95381833 1 - G A rs150074671 95381832 - 95381812 95381852 41 TGCAGGTGCAGCAGTACCGCGTCGCCATGACTGCCAAGGAC TGCAGGTGCAGCAGTACCGTGTCGCCATGACTGCCAAGGAC < 41bp 0.517318525624346 0.72009959439278 NA NA prediction 0.405562137536869 Functional Gain - IPPK ENSG00000127080 CDS Human protein_coding chr9:95381832 chr9:95381833 synonymous SNV . 0 20 hm7G_associated_SNPs_35593 0 0 1 0 2 IPPK chr9:95381768 5'GT 95381768 Upstream 66bp 32733 chr9 95381833 95381833 1 - G A rs150074671 95381832 - 95381812 95381852 41 TGCAGGTGCAGCAGTACCGCGTCGCCATGACTGCCAAGGAC TGCAGGTGCAGCAGTACCGTGTCGCCATGACTGCCAAGGAC < 41bp 0.517318525624346 0.72009959439278 NA NA prediction 0.405562137536869 Functional Gain - IPPK ENSG00000127080 CDS Human protein_coding chr9:95381832 chr9:95381833 synonymous SNV . 0 20 hm7G_associated_SNPs_35593 0 0 1 0 2 IPPK chr9:95381847 3'AG 95381847 Downstream 15bp 32734 chr11 64956117 64956117 1 + C T UCEC 64956118 + 64956098 64956138 41 AGATCTGCAACCTCACACCCGACGCCCTCAAGAGCCGGACC AGATCTGCAACCTCACACCTGACGCCCTCAAGAGCCGGACC < 41bp 0.540821937384701 0.743602337251168 NA NA prediction 0.405560799732934 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64956118 chr11:64956117 synonymous SNV . 0 20 hm7G_associated_SNPs_35594 0 0 1 0 1 CAPN1 chr11:64956057 3'AG 64956057 Downstream 61bp 32735 chr3 183860907 183860907 1 + C T UCEC 183860908 + 183860888 183860928 41 ACATTTCTTGTGACAATCTCGTCCTGGAAATCAACTCTCTC ACATTTCTTGTGACAATCTTGTCCTGGAAATCAACTCTCTC < 41bp 0.495746463834614 0.702777980269544 NA NA prediction 0.405555960539089 Functional Gain - EIF2B5 ENSG00000145191 CDS Human protein_coding chr3:183860908 chr3:183860907 synonymous SNV . 0 20 hm7G_associated_SNPs_35597 0 0 1 0 1 EIF2B5 chr3:183860930 5'GT 183860930 Upstream 24bp 32736 chr13 28794510 28794510 1 + C T GBM 28794511 + 28794491 28794531 41 CCTGCTACTGCTGGATTAGCGCCAGGTAAGTTGAGTAACTA CCTGCTACTGCTGGATTAGTGCCAGGTAAGTTGAGTAACTA < 41bp 0.53174179912264 0.734519277434345 NA NA prediction 0.40555495662341 Functional Gain - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28794511 chr13:28794510 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_35598 0 0 1 0 1 PAN3 chr13:28794515 5'GT 28794515 Upstream 6bp 32737 chr4 108866751 108866751 1 + C T COAD 108866752 + 108866732 108866772 41 TGTATATGTCGCTGAACCCCGATGTACAAGGTAATTAATAG TGTATATGTCGCTGAACCCTGATGTACAAGGTAATTAATAG < 41bp 0.507889064739534 0.710665395078383 NA NA prediction 0.405552660677699 Functional Gain - CYP2U1 ENSG00000155016 CDS Human protein_coding chr4:108866752 chr4:108866751 synonymous SNV . 0 20 hm7G_associated_SNPs_35599 0 0 0 0 1 CYP2U1 chr4:108866761 5'GT 108866761 Upstream 11bp 32738 chr1 36372574 36372574 1 + C T UCEC 36372575 + 36372555 36372595 41 CGGAAGATTTCCAAGGATGCGGGGATGCCTATCCAGGGTCA CGGAAGATTTCCAAGGATGTGGGGATGCCTATCCAGGGTCA < 41bp 0.547877047559709 0.750653009667743 NA NA prediction 0.405551924216068 Functional Gain - AGO1 ENSG00000092847 CDS Human protein_coding chr1:36372575 chr1:36372574 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_35600 0 0 1 1 1 AGO1 chr1:36372536 3'AG 36372536 Downstream 39bp 32739 chr11 64055345 64055345 1 + C T UCEC 64055346 + 64055326 64055366 41 TCCCTGTTCGTCATCTGCGCGCTGTCTCTTGCTGCCTGCCT TCCCTGTTCGTCATCTGCGTGCTGTCTCTTGCTGCCTGCCT < 41bp 0.496752448820392 0.70277363393726 NA NA prediction 0.405547267874519 Functional Gain - GPR137 ENSG00000173264 CDS Human protein_coding chr11:64055346 chr11:64055345 nonsynonymous SNV 0.440 4 20 hm7G_associated_SNPs_35602 0 0 0 0 1 GPR137 chr11:64055418 5'GT 64055418 Upstream 74bp 32740 chr14 103600056 103600056 1 + C T rs2234146 103600057 + 103600037 103600077 41 CTGCAGCCTGCTCTCCCTACGCTGGCCGAGATCATTCGCCT CTGCAGCCTGCTCTCCCTATGCTGGCCGAGATCATTCGCCT < 41bp 0.490195101773338 0.702772965171854 NA NA prediction 0.405545930343707 Functional Gain - TNFAIP2 ENSG00000185215 CDS Human protein_coding chr14:103600057 chr14:103600056 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_35604 0 0 0 0 2 TNFAIP2 chr14:103600019 3'AG 103600019 Downstream 38bp 32741 chr14 103600056 103600056 1 + C T rs2234146 103600057 + 103600037 103600077 41 CTGCAGCCTGCTCTCCCTACGCTGGCCGAGATCATTCGCCT CTGCAGCCTGCTCTCCCTATGCTGGCCGAGATCATTCGCCT < 41bp 0.490195101773338 0.702772965171854 NA NA prediction 0.405545930343707 Functional Gain - TNFAIP2 ENSG00000185215 CDS Human protein_coding chr14:103600057 chr14:103600056 nonsynonymous SNV 0.021 0 20 hm7G_associated_SNPs_35604 0 0 0 0 2 TNFAIP2 chr14:103600140 5'GT 103600140 Upstream 85bp 32742 chr19 3907914 3907914 1 + G A SKCM 3907915 + 3907895 3907935 41 CATGAAAGTGGTCACCCACGGAGGTGAGACCCGCCCCCCGG CATGAAAGTGGTCACCCACAGAGGTGAGACCCGCCCCCCGG < 41bp 0.537296158374054 0.740066880180378 NA NA prediction 0.405541443612648 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3907915 chr19:3907914 nonsynonymous SNV 0.268 3 20 hm7G_associated_SNPs_35607 0 0 0 0 1 ATCAY chr19:3907917 5'GT 3907917 Upstream 4bp 32743 chr11 63586298 63586298 1 + C T UCEC 63586299 + 63586279 63586319 41 CCATCGCCAGACTCGCCCACGGAGACTTTCGCAGCACCAGC CCATCGCCAGACTCGCCCATGGAGACTTTCGCAGCACCAGC < 41bp 0.492590915576574 0.702770259553162 NA NA prediction 0.405540519106324 Functional Gain - C11orf84 ENSG00000168005 CDS Human protein_coding chr11:63586299 chr11:63586298 nonsynonymous SNV 0.113 0 20 hm7G_associated_SNPs_35608 0 0 1 0 1 C11orf84 chr11:63586274 3'AG 63586274 Downstream 25bp 32744 chr6 28327758 28327758 1 + C T UCEC 28327759 + 28327739 28327779 41 AGGCAGCTGGATGAGCCGGCGCCGCAGGTAGAAAGAACAGG AGGCAGCTGGATGAGCCGGTGCCGCAGGTAGAAAGAACAGG < 41bp 0.541235931711597 0.744005676551892 NA NA prediction 0.40553948968059 Functional Gain - ZKSCAN3 ENSG00000189298 CDS Human protein_coding chr6:28327759 chr6:28327758 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_35609 0 0 0 0 1 ZKSCAN3 chr6:28327765 5'GT 28327765 Upstream 8bp 32745 chr16 87432450 87432450 1 + C T COAD 87432451 + 87432431 87432471 41 AGAAGATGTCCGACTTATTCGAGAGCAGCATCCAACCAAAA AGAAGATGTCCGACTTATTTGAGAGCAGCATCCAACCAAAA < 41bp 0.508006043909845 0.710775172458106 NA NA prediction 0.405538257096522 Functional Gain - MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87432451 chr16:87432450 stopgain 0.982 0 20 hm7G_associated_SNPs_35610 0 0 1 0 2 MAP1LC3B chr16:87432421 3'AG 87432421 Downstream 30bp 32746 chr16 87432450 87432450 1 + C T COAD 87432451 + 87432431 87432471 41 AGAAGATGTCCGACTTATTCGAGAGCAGCATCCAACCAAAA AGAAGATGTCCGACTTATTTGAGAGCAGCATCCAACCAAAA < 41bp 0.508006043909845 0.710775172458106 NA NA prediction 0.405538257096522 Functional Gain - MAP1LC3B ENSG00000140941 CDS Human protein_coding chr16:87432451 chr16:87432450 stopgain 0.982 0 20 hm7G_associated_SNPs_35610 0 0 1 0 2 MAP1LC3B chr16:87432476 5'GT 87432476 Upstream 27bp 32747 chr10 8051254 8051254 1 + C T SKCM 8051255 + 8051235 8051275 41 GGGCCAGTGCCAAAGCCCCCGTGCGCAGCGTGGTGACTGAG GGGCCAGTGCCAAAGCCCCTGTGCGCAGCGTGGTGACTGAG < 41bp 0.504362087450229 0.707127754429995 NA NA prediction 0.405531333959533 Functional Gain - TAF3 ENSG00000165632 CDS Human protein_coding chr10:8051255 chr10:8051254 synonymous SNV . 0 20 hm7G_associated_SNPs_35611 0 0 1 0 1 TAF3 chr10:8051293 5'GT 8051293 Upstream 40bp 32748 chr6 121767996 121767996 1 + G T LUAD 121767997 + 121767977 121768017 41 GGTGGTGCCCAGGCAACATGGGTGACTGGAGCGCCTTAGGC GGTGGTGCCCAGGCAACATTGGTGACTGGAGCGCCTTAGGC < 41bp 0.703366654186004 0.906129674260911 NA NA prediction 0.405526040149814 Functional Gain - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121767997 chr6:121767996 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_35613 0 0 0 0 2 GJA1 chr6:121767978 3'AG 121767978 Downstream 19bp 32749 chr6 121767996 121767996 1 + G T LUAD 121767997 + 121767977 121768017 41 GGTGGTGCCCAGGCAACATGGGTGACTGGAGCGCCTTAGGC GGTGGTGCCCAGGCAACATTGGTGACTGGAGCGCCTTAGGC < 41bp 0.703366654186004 0.906129674260911 NA NA prediction 0.405526040149814 Functional Gain - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121767997 chr6:121767996 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_35613 0 0 0 0 2 GJA1 chr6:121768070 5'GT 121768070 Upstream 75bp 32750 chr19 36351246 36351246 1 + G A SKCM 36351247 + 36351227 36351267 41 GCCACACACTGTGCAGGAGGGAGAGAAGGTCATTTTCCTGT GCCACACACTGTGCAGGAGAGAGAGAAGGTCATTTTCCTGT < 41bp 0.523502734816985 0.726262416280784 NA NA prediction 0.405519362927598 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351247 chr19:36351246 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_35617 0 0 0 0 2 KIRREL2 chr19:36351199 3'AG 36351199 Downstream 48bp 32751 chr19 36351246 36351246 1 + G A SKCM 36351247 + 36351227 36351267 41 GCCACACACTGTGCAGGAGGGAGAGAAGGTCATTTTCCTGT GCCACACACTGTGCAGGAGAGAGAGAAGGTCATTTTCCTGT < 41bp 0.523502734816985 0.726262416280784 NA NA prediction 0.405519362927598 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36351247 chr19:36351246 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_35617 0 0 0 0 2 KIRREL2 chr19:36351304 5'GT 36351304 Upstream 59bp 32752 chr17 48631733 48631733 1 + C T rs147637130 48631734 + 48631714 48631754 41 GCCTATTGACCGCCTTTTCCGAGCGCATGCGTCGTGTCCCG GCCTATTGACCGCCTTTTCTGAGCGCATGCGTCGTGTCCCG < 41bp 0.543190907445739 0.745949851275498 NA NA prediction 0.405517887659519 Functional Gain - SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48631734 chr17:48631733 synonymous SNV . 0 20 hm7G_associated_SNPs_35619 0 0 1 0 1 SPATA20 chr17:48631811 5'GT 48631811 Upstream 79bp 32753 chr5 35654760 35654760 1 + C T COAD 35654761 + 35654741 35654781 41 TGAAGAAGATGCTTTTGCACGAGAGCAAAGGGAGAAAAGAC TGAAGAAGATGCTTTTGCATGAGAGCAAAGGGAGAAAAGAC < 41bp 0.504897794686551 0.707650028905759 NA NA prediction 0.405504468438415 Functional Gain - SPEF2 ENSG00000152582 CDS Human protein_coding chr5:35654761 chr5:35654760 stopgain 0.998 1 20 hm7G_associated_SNPs_35627 0 0 0 0 1 SPEF2 chr5:35654828 5'GT 35654828 Upstream 69bp 32754 chr20 61945137 61945137 1 + C T UCEC 61945138 + 61945118 61945158 41 TCCAACCTGGCCCTGGCCTCGGAGACCCCCGACAGCCTGCA TCCAACCTGGCCCTGGCCTTGGAGACCCCCGACAGCCTGCA < 41bp 0.51212878467826 0.714880457390374 NA NA prediction 0.405503345424229 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61945138 chr20:61945137 nonsynonymous SNV 0.520 2 20 hm7G_associated_SNPs_35628 0 0 0 0 1 COL20A1 chr20:61945095 3'AG 61945095 Downstream 43bp 32755 chr5 150858932 150858932 1 + C T rs36112231 150858933 + 150858913 150858953 41 TCGGGATCTTTTTCACCTACGCACTCCAGTTCTACGTCCCG TCGGGATCTTTTTCACCTATGCACTCCAGTTCTACGTCCCG < 41bp 0.540919798085536 0.743670873346929 NA NA prediction 0.405502150522786 Functional Gain - SLC36A1 ENSG00000123643 CDS Human protein_coding chr5:150858933 chr5:150858932 synonymous SNV . 0 20 hm7G_associated_SNPs_35630 0 0 0 0 1 SLC36A1 chr5:150858881 3'AG 150858881 Downstream 52bp 32756 chr16 70176210 70176210 1 + C T BLCA 70176211 + 70176191 70176231 41 TACGCACCTCTCCTCTCTACGACCGGCTGGATGCACAGGGA TACGCACCTCTCCTCTCTATGACCGGCTGGATGCACAGGGA < 41bp 0.547086069876661 0.749835929590801 NA NA prediction 0.405499719428281 Functional Gain - PDPR ENSG00000090857 CDS Human protein_coding chr16:70176211 chr16:70176210 synonymous SNV . 0 20 hm7G_associated_SNPs_35631 0 0 0 0 1 PDPR chr16:70176137 3'AG 70176137 Downstream 74bp 32757 chr7 133884144 133884144 1 + C T UCEC 133884145 + 133884125 133884165 41 AAAATTAATCAGAATTTTCCGGGATATTTTGATGAGGTAAT AAAATTAATCAGAATTTTCTGGGATATTTTGATGAGGTAAT < 41bp 0.521474623768713 0.724222031536315 NA NA prediction 0.405494815535203 Functional Gain - LRGUK ENSG00000155530 CDS Human protein_coding chr7:133884145 chr7:133884144 nonsynonymous SNV 0.977 3 20 hm7G_associated_SNPs_35633 0 0 0 0 1 LRGUK chr7:133884173 5'GT 133884173 Upstream 30bp 32758 chr6 44328305 44328305 1 + C T BRCA 44328306 + 44328286 44328326 41 AGCCTGCTTAAGTTGCAGACGAGTAAGTCACAGACCCTCCT AGCCTGCTTAAGTTGCAGATGAGTAAGTCACAGACCCTCCT < 41bp 0.508857284523903 0.711602759661514 NA NA prediction 0.405490950275221 Functional Gain - SPATS1 ENSG00000249481 CDS Human protein_coding chr6:44328306 chr6:44328305 nonsynonymous SNV 0.967 3 20 hm7G_associated_SNPs_35636 0 0 0 0 1 SPATS1 chr6:44328307 5'GT 44328307 Upstream 3bp 32759 chr15 41188263 41188263 1 + G A SKCM 41188264 + 41188244 41188284 41 TGTGCATGAGCCTGGGCAAGGATACACTGCTCCGGTAATCA TGTGCATGAGCCTGGGCAAAGATACACTGCTCCGGTAATCA < 41bp 0.532888839577591 0.735633624166236 NA NA prediction 0.405489569177292 Functional Gain - VPS18 ENSG00000104142 CDS Human protein_coding chr15:41188264 chr15:41188263 synonymous SNV . 0 20 hm7G_associated_SNPs_35637 0 0 1 0 1 VPS18 chr15:41188277 5'GT 41188277 Upstream 15bp 32760 chr15 83499739 83499739 1 + G A ESCA 83499740 + 83499720 83499760 41 CATCAGAACTTAGGCTTCCGGGCTCCAGTGAAAGATGACCA CATCAGAACTTAGGCTTCCAGGCTCCAGTGAAAGATGACCA < 41bp 0.514303970860274 0.717047899861247 NA NA prediction 0.405487858001945 Functional Gain - WHAMM ENSG00000156232 CDS Human protein_coding chr15:83499740 chr15:83499739 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_35638 0 0 1 0 1 WHAMM chr15:83499831 5'GT 83499831 Upstream 93bp 32761 chr1 118479485 118479485 1 + C T UCEC 118479486 + 118479466 118479506 41 CACACAAGCATTGTTTCTACGAGAAAAGAACCTGCTAGTTA CACACAAGCATTGTTTCTATGAGAAAAGAACCTGCTAGTTA < 41bp 0.511808779069648 0.714547560707937 NA NA prediction 0.405477563276579 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118479486 chr1:118479485 stopgain 0.986 0 20 hm7G_associated_SNPs_35640 0 0 1 0 2 WDR3 chr1:118479392 3'AG 118479392 Downstream 94bp 32762 chr1 118479485 118479485 1 + C T UCEC 118479486 + 118479466 118479506 41 CACACAAGCATTGTTTCTACGAGAAAAGAACCTGCTAGTTA CACACAAGCATTGTTTCTATGAGAAAAGAACCTGCTAGTTA < 41bp 0.511808779069648 0.714547560707937 NA NA prediction 0.405477563276579 Functional Gain - WDR3 ENSG00000065183 CDS Human protein_coding chr1:118479486 chr1:118479485 stopgain 0.986 0 20 hm7G_associated_SNPs_35640 0 0 1 0 2 WDR3 chr1:118479510 5'GT 118479510 Upstream 26bp 32763 chr20 2686358 2686358 1 + C T rs61733891 2686359 + 2686339 2686379 41 TGGAGCGCACAGCCTTCATCGACTTCGTGGAAAAGGACCGA TGGAGCGCACAGCCTTCATTGACTTCGTGGAAAAGGACCGA < 41bp 0.520082154247377 0.722820057452088 NA NA prediction 0.405475806409421 Functional Gain - EBF4 ENSG00000088881 CDS Human protein_coding chr20:2686359 chr20:2686358 synonymous SNV . 0 20 hm7G_associated_SNPs_35643 0 0 0 0 1 EBF4 chr20:2686379 5'GT 2686379 Upstream 22bp 32764 chr2 33042601 33042601 1 + C T UCEC 33042602 + 33042582 33042622 41 TTCTGTTCGACTCAATTTACGGGGCTTGTTATCTAAAGCAA TTCTGTTCGACTCAATTTATGGGGCTTGTTATCTAAAGCAA < 41bp 0.519819807765146 0.722555296410467 NA NA prediction 0.405470977290643 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33042602 chr2:33042601 nonsynonymous SNV 0.980 2 20 hm7G_associated_SNPs_35645 0 0 1 3 2 TTC27 chr2:33042524 3'AG 33042524 Downstream 78bp 32765 chr2 33042601 33042601 1 + C T UCEC 33042602 + 33042582 33042622 41 TTCTGTTCGACTCAATTTACGGGGCTTGTTATCTAAAGCAA TTCTGTTCGACTCAATTTATGGGGCTTGTTATCTAAAGCAA < 41bp 0.519819807765146 0.722555296410467 NA NA prediction 0.405470977290643 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:33042602 chr2:33042601 nonsynonymous SNV 0.980 2 20 hm7G_associated_SNPs_35645 0 0 1 3 2 TTC27 chr2:33042624 5'GT 33042624 Upstream 24bp 32766 chr20 4158178 4158178 1 + G T UCEC 4158179 + 4158159 4158199 41 CTTACCAACCACGGCCGCAGGATCCCCAAGGACGTGGTTGA CTTACCAACCACGGCCGCATGATCCCCAAGGACGTGGTTGA < 41bp 0.710787036889731 0.913522310110125 NA NA prediction 0.405470546440788 Functional Gain - SMOX ENSG00000088826 CDS Human protein_coding chr20:4158179 chr20:4158178 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_35646 0 0 0 0 1 SMOX chr20:4158224 5'GT 4158224 Upstream 47bp 32767 chr17 4352582 4352582 1 + G A SKCM 4352583 + 4352563 4352603 41 CGCCATGGCCTTTGTGACTGGAGCCCTGGGGTTCTGGGCCC CGCCATGGCCTTTGTGACTAGAGCCCTGGGGTTCTGGGCCC < 41bp 0.569285107591525 0.772019538519368 NA NA prediction 0.405468861855687 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352583 chr17:4352582 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_35647 0 0 0 0 1 SPNS3 chr17:4352530 3'AG 4352530 Downstream 53bp 32768 chr12 53687096 53687096 1 + C T STAD 53687097 + 53687077 53687117 41 TCTGGGATGTGACTGACCGCGACATTGACCGCTACACGGAA TCTGGGATGTGACTGACCGTGACATTGACCGCTACACGGAA < 41bp 0.491649609981911 0.702733149250983 NA NA prediction 0.405466298501966 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53687097 chr12:53687096 synonymous SNV . 0 20 hm7G_associated_SNPs_35648 0 0 1 0 1 ESPL1 chr12:53687057 3'AG 53687057 Downstream 40bp 32769 chr12 12247684 12247684 1 + G A COAD 12247685 + 12247665 12247705 41 TCACAGACCAGGTCCTAATGGGTGTGGACCCCAGGGGAGAA TCACAGACCAGGTCCTAATAGGTGTGGACCCCAGGGGAGAA < 41bp 0.507078653149832 0.709808829973676 NA NA prediction 0.405460353647689 Functional Gain - BCL2L14 ENSG00000121380 CDS Human protein_coding chr12:12247685 chr12:12247684 nonsynonymous SNV 0.176 1 20 hm7G_associated_SNPs_35649 0 0 0 0 1 BCL2L14 chr12:12247598 3'AG 12247598 Downstream 87bp 32770 chr19 7523498 7523498 1 + C T UCEC 7523499 + 7523479 7523519 41 AGCGCCTCCTTGCAAGGGCCGGAGATGTATGAAATCTACAC AGCGCCTCCTTGCAAGGGCTGGAGATGTATGAAATCTACAC < 41bp 0.539720306577704 0.742449949527011 NA NA prediction 0.405459285898615 Functional Gain - ARHGEF18 ENSG00000104880;ENSG00000268861 CDS Human other chr19:7523499 chr19:7523498 nonsynonymous SNV 0.292 4 20 hm7G_associated_SNPs_35650 0 0 0 0 1 ARHGEF18 chr19:7523576 5'GT 7523576 Upstream 79bp 32771 chr3 126733575 126733575 1 + C T LUSC 126733576 + 126733556 126733596 41 TCGTCTGTGAGATCGGGGACGCCAGCTCCGTGCGTGCCCAT TCGTCTGTGAGATCGGGGATGCCAGCTCCGTGCGTGCCCAT < 41bp 0.530326182845936 0.733055825110735 NA NA prediction 0.405459284529597 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126733576 chr3:126733575 synonymous SNV . 0 20 hm7G_associated_SNPs_35651 0 0 1 0 2 PLXNA1 chr3:126733554 3'AG 126733554 Downstream 22bp 32772 chr3 126733575 126733575 1 + C T LUSC 126733576 + 126733556 126733596 41 TCGTCTGTGAGATCGGGGACGCCAGCTCCGTGCGTGCCCAT TCGTCTGTGAGATCGGGGATGCCAGCTCCGTGCGTGCCCAT < 41bp 0.530326182845936 0.733055825110735 NA NA prediction 0.405459284529597 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126733576 chr3:126733575 synonymous SNV . 0 20 hm7G_associated_SNPs_35651 0 0 1 0 2 PLXNA1 chr3:126733674 5'GT 126733674 Upstream 100bp 32773 chr4 37435524 37435524 1 + C T rs17604216 37435525 + 37435505 37435545 41 CTTCTACCAATGCTGAAAACGAGAAGACATGGCAAGAGATA CTTCTACCAATGCTGAAAATGAGAAGACATGGCAAGAGATA < 41bp 0.51540219664086 0.718131328802063 NA NA prediction 0.405458264322406 Functional Gain - NWD2 ENSG00000174145 CDS Human protein_coding chr4:37435525 chr4:37435524 synonymous SNV . 0 20 hm7G_associated_SNPs_35652 0 0 0 0 1 NWD2 chr4:37435498 3'AG 37435498 Downstream 27bp 32774 chrX 595532 595532 1 + C T COAD 595533 + 595513 595553 41 GCGCGAGGAGCTCAGCCAGCGCCTGGGGCTCTCCGAGGCGC GCGCGAGGAGCTCAGCCAGTGCCTGGGGCTCTCCGAGGCGC < 41bp 0.52302260011893 0.725748320053505 NA NA prediction 0.405451439869152 Functional Gain - SHOX ENSG00000185960 CDS Human protein_coding chrX:595533 chrX:595532 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_35655 0 0 0 0 1 SHOX chrX:595561 5'GT 595561 Upstream 30bp 32775 chr1 34662916 34662916 1 + C T UCEC 34662917 + 34662897 34662937 41 AAGAGCACTCGATCCTGGTCGAAGAGAGTTCTGGGGAGCTG AAGAGCACTCGATCCTGGTTGAAGAGAGTTCTGGGGAGCTG < 41bp 0.533985118866739 0.736710811788274 NA NA prediction 0.405451385843071 Functional Gain - C1orf94 ENSG00000142698 CDS Human protein_coding chr1:34662917 chr1:34662916 synonymous SNV . 0 20 hm7G_associated_SNPs_35657 0 0 0 0 1 C1orf94 chr1:34662826 3'AG 34662826 Downstream 91bp 32776 chr1 76255700 76255700 1 + G T UCEC 76255701 + 76255681 76255721 41 AGTTGTGGAATATGTTAAAGGTCTACAGAAAGAAGATGGTT AGTTGTGGAATATGTTAAATGTCTACAGAAAGAAGATGGTT < 41bp 0.682885376543001 0.885610724168926 NA NA prediction 0.405450695251849 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255701 chr1:76255700 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_35658 0 0 1 0 2 RABGGTB chr1:76255637 3'AG 76255637 Downstream 64bp 32777 chr1 76255700 76255700 1 + G T UCEC 76255701 + 76255681 76255721 41 AGTTGTGGAATATGTTAAAGGTCTACAGAAAGAAGATGGTT AGTTGTGGAATATGTTAAATGTCTACAGAAAGAAGATGGTT < 41bp 0.682885376543001 0.885610724168926 NA NA prediction 0.405450695251849 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255701 chr1:76255700 nonsynonymous SNV 0.983 2 20 hm7G_associated_SNPs_35658 0 0 1 0 2 RABGGTB chr1:76255742 5'GT 76255742 Upstream 43bp 32778 chr10 135020720 135020720 1 + C T LUSC 135020721 + 135020701 135020741 41 GCGGCCGCACCCTGCGACACGCTGGACTTCAGCCCCCTGGA GCGGCCGCACCCTGCGACATGCTGGACTTCAGCCCCCTGGA < 41bp 0.53191562927234 0.734639632890761 NA NA prediction 0.405448007236842 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135020721 chr10:135020720 nonsynonymous SNV 0.939 2 20 hm7G_associated_SNPs_35659 0 0 0 0 1 KNDC1 chr10:135020641 3'AG 135020641 Downstream 80bp 32779 chr11 15243085 15243085 1 + G T LUAD 15243086 + 15243066 15243106 41 GCCACTCAGAGGCCACACGGGCTGAGGCTGCGGCTGTGGTG GCCACTCAGAGGCCACACGTGCTGAGGCTGCGGCTGTGGTG < 41bp 0.714835655379572 0.917558184074165 NA NA prediction 0.405445057389186 Functional Gain - INSC ENSG00000188487 CDS Human protein_coding chr11:15243086 chr11:15243085 synonymous SNV . 0 20 hm7G_associated_SNPs_35660 0 0 0 0 1 INSC chr11:15243023 3'AG 15243023 Downstream 63bp 32780 chr11 60468359 60468359 1 + C T CESC 60468360 + 60468340 60468380 41 TCGATGACTTCAGCAGTTCCGGTGGCCAATTCTGTGTTGGT TCGATGACTTCAGCAGTTCTGGTGGCCAATTCTGTGTTGGT < 41bp 0.50904696810049 0.711769035319716 NA NA prediction 0.405444134438453 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60468360 chr11:60468359 nonsynonymous SNV 0.021 1 20 hm7G_associated_SNPs_35661 0 0 0 0 1 MS4A8 chr11:60468333 3'AG 60468333 Downstream 27bp 32781 chr6 158487570 158487570 1 + C T rs61748682 158487571 + 158487551 158487591 41 TGGGGACCTGGAACGTGAACGGAGGAAAGCAGTTCCGGAGC TGGGGACCTGGAACGTGAATGGAGGAAAGCAGTTCCGGAGC < 41bp 0.538695083205198 0.741417123495944 NA NA prediction 0.405444080581491 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158487571 chr6:158487570 synonymous SNV . 0 20 hm7G_associated_SNPs_35662 0 0 1 0 1 SYNJ2 chr6:158487476 3'AG 158487476 Downstream 95bp 32782 chr1 32950717 32950717 1 + C T rs553068006 32950718 + 32950698 32950738 41 ACAGGTCCACAGATCCAACCGTCCAATCATCTGCAAGGGCT ACAGGTCCACAGATCCAACTGTCCAATCATCTGCAAGGGCT < 41bp 0.511089849061379 0.713809641245711 NA NA prediction 0.405439584368665 Functional Gain - ZBTB8B ENSG00000254553;ENSG00000273274 CDS Human other chr1:32950718 chr1:32950717 nonsynonymous SNV 0.989 0 20 hm7G_associated_SNPs_35663 0 0 0 0 1 ZBTB8B chr1:32950702 3'AG 32950702 Downstream 16bp 32783 chr1 117624489 117624489 1 + C T UCEC 117624490 + 117624470 117624510 41 AAAACCCTGACAATGATTGCGCTCATCCTGACCCAGAAGAA AAAACCCTGACAATGATTGTGCTCATCCTGACCCAGAAGAA < 41bp 0.549880393600439 0.752600016812417 NA NA prediction 0.405439246423956 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117624490 chr1:117624489 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_35664 0 0 1 0 2 TTF2 chr1:117624450 3'AG 117624450 Downstream 40bp 32784 chr1 117624489 117624489 1 + C T UCEC 117624490 + 117624470 117624510 41 AAAACCCTGACAATGATTGCGCTCATCCTGACCCAGAAGAA AAAACCCTGACAATGATTGTGCTCATCCTGACCCAGAAGAA < 41bp 0.549880393600439 0.752600016812417 NA NA prediction 0.405439246423956 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117624490 chr1:117624489 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_35664 0 0 1 0 2 TTF2 chr1:117624569 5'GT 117624569 Upstream 81bp 32785 chr19 49971706 49971706 1 + G A SKCM 49971707 + 49971687 49971727 41 TGCTGGCTGTGGTGTGTCCGGACGAGTGGCCCCTGCTTGCC TGCTGGCTGTGGTGTGTCCAGACGAGTGGCCCCTGCTTGCC < 41bp 0.547955237544878 0.75067252627468 NA NA prediction 0.405434577459604 Functional Gain - ALDH16A1 ENSG00000161618 CDS Human protein_coding chr19:49971707 chr19:49971706 synonymous SNV . 0 20 hm7G_associated_SNPs_35669 0 0 1 0 1 ALDH16A1 chr19:49971638 3'AG 49971638 Downstream 69bp 32786 chr1 234444857 234444857 1 + C T CESC 234444858 + 234444838 234444878 41 TTGTTTTAGGGAATGCTGTCGATTTTTTGGAGACAATGGCT TTGTTTTAGGGAATGCTGTTGATTTTTTGGAGACAATGGCT < 41bp 0.51591551737435 0.718631380500136 NA NA prediction 0.405431726251571 Functional Gain - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234444858 chr1:234444857 stopgain 1.000 1 20 hm7G_associated_SNPs_35670 0 0 0 0 1 SLC35F3 chr1:234444847 3'AG 234444847 Downstream 11bp 32787 chrX 140969581 140969581 1 + G A UCEC 140969582 + 140969562 140969602 41 GAAGTGCTGAATGCAATAGGGGTGTGTGCTCAGAGGGAGCA GAAGTGCTGAATGCAATAGAGGTGTGTGCTCAGAGGGAGCA < 41bp 0.540317380460732 0.743033032188123 NA NA prediction 0.405431303454781 Functional Gain - MAGEC3 ENSG00000165509 CDS Human protein_coding chrX:140969582 chrX:140969581 nonsynonymous SNV 0.006 2 20 hm7G_associated_SNPs_35671 0 0 0 0 1 MAGEC3 chrX:140969582 5'GT 140969582 Upstream 2bp 32788 chr12 53895952 53895952 1 + C T COAD 53895953 + 53895933 53895973 41 CCTTCCGGGTCACCGTTGGCGACACCAGCTGCACTGGTGAG CCTTCCGGGTCACCGTTGGTGACACCAGCTGCACTGGTGAG < 41bp 0.526069376463891 0.728784595382926 NA NA prediction 0.405430437838068 Functional Gain - TARBP2 ENSG00000139546 CDS Human protein_coding chr12:53895953 chr12:53895952 synonymous SNV . 0 20 hm7G_associated_SNPs_35672 0 0 1 1 1 TARBP2 chr12:53895968 5'GT 53895968 Upstream 17bp 32789 chr19 12978775 12978775 1 + C T rs371451221 12978776 + 12978756 12978796 41 GGGAAGGCACCTCCAGCGCCGGGGACTCCGAGGCCAGTGAG GGGAAGGCACCTCCAGCGCTGGGGACTCCGAGGCCAGTGAG < 41bp 0.539414561641429 0.742129096823997 NA NA prediction 0.405429070365135 Functional Gain - MAST1 ENSG00000105613 CDS Human protein_coding chr19:12978776 chr19:12978775 synonymous SNV . 0 20 hm7G_associated_SNPs_35673 0 0 0 0 1 MAST1 chr19:12978791 5'GT 12978791 Upstream 17bp 32790 chr1 165532784 165532784 1 + G A SKCM 165532785 + 165532765 165532805 41 GAGCCCACAGAGCTGACAGGGTGGCCCATCACCCGGGTGGG GAGCCCACAGAGCTGACAGAGTGGCCCATCACCCGGGTGGG < 41bp 0.499674224704668 0.702713225698802 NA NA prediction 0.405426451397604 Functional Gain - LRRC52 ENSG00000162763 CDS Human protein_coding chr1:165532785 chr1:165532784 nonsynonymous SNV 0.969 2 20 hm7G_associated_SNPs_35674 0 0 0 0 1 LRRC52 chr1:165532742 3'AG 165532742 Downstream 43bp 32791 chr9 139874654 139874654 1 + G A SKCM 139874655 + 139874635 139874675 41 GCCGAACCCAGACCCCCAGGGCTGAGTTAAAGGAGAAATTC GCCGAACCCAGACCCCCAGAGCTGAGTTAAAGGAGAAATTC < 41bp 0.46656801108452 0.702712675903723 NA NA prediction 0.405425351807446 Functional Gain - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139874655 chr9:139874654 synonymous SNV . 0 20 hm7G_associated_SNPs_35675 0 0 0 1 2 PTGDS chr9:139874635 3'AG 139874635 Downstream 20bp 32792 chr9 139874654 139874654 1 + G A SKCM 139874655 + 139874635 139874675 41 GCCGAACCCAGACCCCCAGGGCTGAGTTAAAGGAGAAATTC GCCGAACCCAGACCCCCAGAGCTGAGTTAAAGGAGAAATTC < 41bp 0.46656801108452 0.702712675903723 NA NA prediction 0.405425351807446 Functional Gain - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139874655 chr9:139874654 synonymous SNV . 0 20 hm7G_associated_SNPs_35675 0 0 0 1 2 PTGDS chr9:139874736 5'GT 139874736 Upstream 83bp 32793 chr11 13729476 13729476 1 + C T STAD 13729477 + 13729457 13729497 41 CAGTTAAATGTGATTGCAACGCGACAGCTTATTCTCCTTGC CAGTTAAATGTGATTGCAATGCGACAGCTTATTCTCCTTGC < 41bp 0.503144693238873 0.705856770197553 NA NA prediction 0.40542415391736 Functional Gain - FAR1 ENSG00000197601 CDS Human protein_coding chr11:13729477 chr11:13729476 nonsynonymous SNV 0.614 4 20 hm7G_associated_SNPs_35677 0 0 1 0 1 FAR1 chr11:13729447 3'AG 13729447 Downstream 30bp 32794 chr17 73753181 73753181 1 + G A SKCM 73753182 + 73753162 73753202 41 TCATCACCATAGAGTCCCAGGATGGAGGTAGGCACCTGTCC TCATCACCATAGAGTCCCAAGATGGAGGTAGGCACCTGTCC < 41bp 0.491625266902683 0.702711938616748 NA NA prediction 0.405423877233497 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73753182 chr17:73753181 synonymous SNV . 0 20 hm7G_associated_SNPs_35678 0 0 0 0 1 ITGB4 chr17:73753188 5'GT 73753188 Upstream 8bp 32795 chr5 118970375 118970375 1 + G A SKCM 118970376 + 118970356 118970396 41 GAAGAAGACCTTGGCCTGAGGAGATCCTGGAGCCAATGTCC GAAGAAGACCTTGGCCTGAAGAGATCCTGGAGCCAATGTCC < 41bp 0.499971344505281 0.702711834453757 NA NA prediction 0.405423668907515 Functional Gain - FAM170A ENSG00000164334 CDS Human protein_coding chr5:118970376 chr5:118970375 nonsynonymous SNV 0.114 0 20 hm7G_associated_SNPs_35679 0 0 0 0 1 FAM170A chr5:118970429 5'GT 118970429 Upstream 55bp 32796 chr20 3725645 3725645 1 + C T STAD 3725646 + 3725626 3725666 41 TCCACAGCTTTGGCTACACCGCCCGCGATTACTACCATGAC TCCACAGCTTTGGCTACACTGCCCGCGATTACTACCATGAC < 41bp 0.526314213992502 0.729025236416503 NA NA prediction 0.405422044848003 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725646 chr20:3725645 synonymous SNV . 0 20 hm7G_associated_SNPs_35680 0 0 0 0 2 HSPA12B chr20:3725549 3'AG 3725549 Downstream 97bp 32797 chr20 3725645 3725645 1 + C T STAD 3725646 + 3725626 3725666 41 TCCACAGCTTTGGCTACACCGCCCGCGATTACTACCATGAC TCCACAGCTTTGGCTACACTGCCCGCGATTACTACCATGAC < 41bp 0.526314213992502 0.729025236416503 NA NA prediction 0.405422044848003 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3725646 chr20:3725645 synonymous SNV . 0 20 hm7G_associated_SNPs_35680 0 0 0 0 2 HSPA12B chr20:3725735 5'GT 3725735 Upstream 91bp 32798 chr2 135102526 135102526 1 + C T STAD 135102527 + 135102507 135102547 41 GAAGAAGGTTGTAGGAAACCGATCTGGCTGCCCAACTGTAG GAAGAAGGTTGTAGGAAACTGATCTGGCTGCCCAACTGTAG < 41bp 0.489847150165897 0.702710615633512 NA NA prediction 0.405421231267024 Functional Gain - MGAT5 ENSG00000152127 CDS Human protein_coding chr2:135102527 chr2:135102526 stopgain 1.000 1 20 hm7G_associated_SNPs_35681 0 0 1 0 1 MGAT5 chr2:135102501 3'AG 135102501 Downstream 26bp 32799 chr17 61601570 61601570 1 + C T ESCA 61601571 + 61601551 61601591 41 ACTGCAACGACGGCTTCTGCGAACTCTTCGGCTACTCCCGA ACTGCAACGACGGCTTCTGTGAACTCTTCGGCTACTCCCGA < 41bp 0.483493509570633 0.702708842536578 NA NA prediction 0.405417685073157 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601571 chr17:61601570 synonymous SNV . 0 20 hm7G_associated_SNPs_35682 0 0 0 0 2 KCNH6 chr17:61601500 3'AG 61601500 Downstream 71bp 32800 chr17 61601570 61601570 1 + C T ESCA 61601571 + 61601551 61601591 41 ACTGCAACGACGGCTTCTGCGAACTCTTCGGCTACTCCCGA ACTGCAACGACGGCTTCTGTGAACTCTTCGGCTACTCCCGA < 41bp 0.483493509570633 0.702708842536578 NA NA prediction 0.405417685073157 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601571 chr17:61601570 synonymous SNV . 0 20 hm7G_associated_SNPs_35682 0 0 0 0 2 KCNH6 chr17:61601597 5'GT 61601597 Upstream 28bp 32801 chr8 95884124 95884124 1 + G T LUSC 95884125 + 95884105 95884145 41 CTTTTAGCCTCCAGTCTGTGGACTTTGAAGCTGTGGCAATC CTTTTAGCCTCCAGTCTGTTGACTTTGAAGCTGTGGCAATC < 41bp 0.36502614783188 0.702706529056718 NA NA prediction 0.405413058113435 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95884125 chr8:95884124 synonymous SNV . 0 20 hm7G_associated_SNPs_35684 0 0 1 2 1 INTS8 chr8:95884112 3'AG 95884112 Downstream 13bp 32802 chr19 48981728 48981728 1 + G A SKCM 48981729 + 48981709 48981749 41 TTACATCCCCAACAACAAGGGGCAGCTCATCAAAGCCTGCA TTACATCCCCAACAACAAGAGGCAGCTCATCAAAGCCTGCA < 41bp 0.551282713332366 0.753988498547402 NA NA prediction 0.405411570430072 Functional Gain - CYTH2 ENSG00000105443 CDS Human protein_coding chr19:48981729 chr19:48981728 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_35686 0 0 1 1 1 CYTH2 chr19:48981695 3'AG 48981695 Downstream 34bp 32803 chr11 67172886 67172886 1 + G A COAD 67172887 + 67172867 67172907 41 CAGGTAAAGATGCAGTGCCGGAAAGGCATCCCGTCTGCCCT CAGGTAAAGATGCAGTGCCAGAAAGGCATCCCGTCTGCCCT < 41bp 0.52028591214369 0.72298761176221 NA NA prediction 0.40540339923704 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67172887 chr11:67172886 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_35687 0 0 0 0 2 TBC1D10C chr11:67172870 3'AG 67172870 Downstream 17bp 32804 chr11 67172886 67172886 1 + G A COAD 67172887 + 67172867 67172907 41 CAGGTAAAGATGCAGTGCCGGAAAGGCATCCCGTCTGCCCT CAGGTAAAGATGCAGTGCCAGAAAGGCATCCCGTCTGCCCT < 41bp 0.52028591214369 0.72298761176221 NA NA prediction 0.40540339923704 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67172887 chr11:67172886 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_35687 0 0 0 0 2 TBC1D10C chr11:67172977 5'GT 67172977 Upstream 92bp 32805 chr16 304635 304635 1 + C T UCEC 304636 + 304616 304656 41 CGTCATCCCGTGTCCAGACCGGCCGGCGTCACAGCGAATGT CGTCATCCCGTGTCCAGACTGGCCGGCGTCACAGCGAATGT < 41bp 0.548645395866742 0.751345085030017 NA NA prediction 0.405399378326549 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:304636 chr16:304635 nonsynonymous SNV 0.106 4 20 hm7G_associated_SNPs_35688 0 0 1 0 1 FAM234A chr16:304680 5'GT 304680 Upstream 46bp 32806 chr2 29404536 29404536 1 + C T UCEC 29404537 + 29404517 29404557 41 GGGTCTCAGGTCCTGCTCACGAGCTCCAATGAGATGGGTAC GGGTCTCAGGTCCTGCTCATGAGCTCCAATGAGATGGGTAC < 41bp 0.535476804064415 0.738171956719169 NA NA prediction 0.405390305309507 Functional Gain - CLIP4 ENSG00000115295 CDS Human protein_coding chr2:29404537 chr2:29404536 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_35689 0 0 0 0 1 CLIP4 chr2:29404438 3'AG 29404438 Downstream 99bp 32807 chr9 139564727 139564727 1 + C T GBM 139564728 + 139564708 139564748 41 GGCACAGCCTGTCTGCAGACGGTACACTCTGTGTGCCCAAG GGCACAGCCTGTCTGCAGATGGTACACTCTGTGTGCCCAAG < 41bp 0.508421742119483 0.711115210558551 NA NA prediction 0.405386936878135 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139564728 chr9:139564727 synonymous SNV . 0 20 hm7G_associated_SNPs_35691 0 0 1 0 1 EGFL7 chr9:139564782 5'GT 139564782 Upstream 56bp 32808 chr9 117087163 117087163 1 + G A LUSC 117087164 + 117087144 117087184 41 AACGATGAGAAGAACTGGGGGCTGTCTGTCTATGGTAGGCA AACGATGAGAAGAACTGGGAGCTGTCTGTCTATGGTAGGCA < 41bp 0.533894046167671 0.736586700511603 NA NA prediction 0.405385308687863 Functional Gain - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117087164 chr9:117087163 nonsynonymous SNV 0.029 3 20 hm7G_associated_SNPs_35692 0 0 1 0 2 ORM1 chr9:117087070 3'AG 117087070 Downstream 94bp 32809 chr9 117087163 117087163 1 + G A LUSC 117087164 + 117087144 117087184 41 AACGATGAGAAGAACTGGGGGCTGTCTGTCTATGGTAGGCA AACGATGAGAAGAACTGGGAGCTGTCTGTCTATGGTAGGCA < 41bp 0.533894046167671 0.736586700511603 NA NA prediction 0.405385308687863 Functional Gain - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117087164 chr9:117087163 nonsynonymous SNV 0.029 3 20 hm7G_associated_SNPs_35692 0 0 1 0 2 ORM1 chr9:117087177 5'GT 117087177 Upstream 15bp 32810 chr16 89598407 89598407 1 + G A rs114135540 89598408 + 89598388 89598428 41 AGACGCTGCTGGCCAAGGCGGTGGCCACGGAGGCTCAGGTG AGACGCTGCTGGCCAAGGCAGTGGCCACGGAGGCTCAGGTG < 41bp 0.551899006704006 0.754590626127705 NA NA prediction 0.405383238847399 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89598408 chr16:89598407 synonymous SNV . 0 20 hm7G_associated_SNPs_35694 1 0 1 0 2 SPG7 chr16:89598312 3'AG 89598312 Downstream 96bp 32811 chr16 89598407 89598407 1 + G A rs114135540 89598408 + 89598388 89598428 41 AGACGCTGCTGGCCAAGGCGGTGGCCACGGAGGCTCAGGTG AGACGCTGCTGGCCAAGGCAGTGGCCACGGAGGCTCAGGTG < 41bp 0.551899006704006 0.754590626127705 NA NA prediction 0.405383238847399 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89598408 chr16:89598407 synonymous SNV . 0 20 hm7G_associated_SNPs_35694 1 0 1 0 2 SPG7 chr16:89598474 5'GT 89598474 Upstream 68bp 32812 chr10 102738609 102738609 1 + C T UCEC 102738610 + 102738590 102738630 41 ACTGCCTGACCCACAGATGCGGAGTTTGTGTTCTCCGTCCT ACTGCCTGACCCACAGATGTGGAGTTTGTGTTCTCCGTCCT < 41bp 0.535221621712793 0.737912769633852 NA NA prediction 0.40538229584212 Functional Gain - SEMA4G ENSG00000095539 CDS Human protein_coding chr10:102738610 chr10:102738609 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_35695 0 0 1 0 1 SEMA4G chr10:102738606 3'AG 102738606 Downstream 4bp 32813 chr19 17919127 17919127 1 + G A GBM 17919128 + 17919108 17919148 41 GCTGGAGGCACAGACTCACGGAGACATCCTGCAGTGGGACT GCTGGAGGCACAGACTCACAGAGACATCCTGCAGTGGGACT < 41bp 0.48214807705049 0.70269087830596 NA NA prediction 0.40538175661192 Functional Gain - B3GNT3 ENSG00000179913 CDS Human protein_coding chr19:17919128 chr19:17919127 nonsynonymous SNV 0.284 0 20 hm7G_associated_SNPs_35696 0 0 1 0 1 B3GNT3 chr19:17919183 5'GT 17919183 Upstream 57bp 32814 chr8 42012386 42012386 1 + C T SKCM 42012387 + 42012367 42012407 41 CTATCTCTTAAGTGTTTACCGCCACAAGATCTTTTTTGTGG CTATCTCTTAAGTGTTTACTGCCACAAGATCTTTTTTGTGG < 41bp 0.537335267666154 0.74002613119118 NA NA prediction 0.405381727050051 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42012387 chr8:42012386 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35697 0 0 0 5 1 AP3M2 chr8:42012478 5'GT 42012478 Upstream 93bp 32815 chr7 150068350 150068350 1 + G A GBM 150068351 + 150068331 150068371 41 ATGCTGGAACGTCGTTGCAGGGGCCCCCTGGCCATGGGCCT ATGCTGGAACGTCGTTGCAAGGGCCCCCTGGCCATGGGCCT < 41bp 0.578738951767131 0.781428897076453 NA NA prediction 0.405379890618644 Functional Gain - REPIN1 ENSG00000214022 CDS Human protein_coding chr7:150068351 chr7:150068350 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_35698 0 0 1 0 1 REPIN1 chr7:150068317 3'AG 150068317 Downstream 34bp 32816 chr1 186863241 186863241 1 + G T COAD 186863242 + 186863222 186863262 41 CTCTGTAGATTACGTTAATGGATGCCAATTATGTCATGGAT CTCTGTAGATTACGTTAATTGATGCCAATTATGTCATGGAT < 41bp 0.384260156271537 0.702689901058539 NA NA prediction 0.405379802117078 Functional Gain - PLA2G4A ENSG00000116711 CDS Human protein_coding chr1:186863242 chr1:186863241 nonsynonymous SNV 0.979 3 20 hm7G_associated_SNPs_35699 0 0 1 0 1 PLA2G4A chr1:186863230 3'AG 186863230 Downstream 12bp 32817 chr3 36527669 36527669 1 + C T COAD 36527670 + 36527650 36527690 41 TCTACGAGACCCTCCGCTTCGGCACCTCCCTGGCCCAGAGG TCTACGAGACCCTCCGCTTTGGCACCTCCCTGGCCCAGAGG < 41bp 0.556906021636951 0.759595009614931 NA NA prediction 0.40537797595596 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36527670 chr3:36527669 synonymous SNV . 0 20 hm7G_associated_SNPs_35701 0 0 0 0 2 STAC chr3:36527626 3'AG 36527626 Downstream 44bp 32818 chr3 36527669 36527669 1 + C T COAD 36527670 + 36527650 36527690 41 TCTACGAGACCCTCCGCTTCGGCACCTCCCTGGCCCAGAGG TCTACGAGACCCTCCGCTTTGGCACCTCCCTGGCCCAGAGG < 41bp 0.556906021636951 0.759595009614931 NA NA prediction 0.40537797595596 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36527670 chr3:36527669 synonymous SNV . 0 20 hm7G_associated_SNPs_35701 0 0 0 0 2 STAC chr3:36527741 5'GT 36527741 Upstream 73bp 32819 chr17 79974725 79974725 1 + G A UCEC 79974726 + 79974706 79974746 41 ATGCCATCTCCCCATCTGCGGCCGATGTGCTGGTGGCCAGG ATGCCATCTCCCCATCTGCAGCCGATGTGCTGGTGGCCAGG < 41bp 0.47577597495722 0.702688087315073 NA NA prediction 0.405376174630147 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974726 chr17:79974725 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_35703 0 0 1 0 2 ASPSCR1 chr17:79974676 3'AG 79974676 Downstream 50bp 32820 chr17 79974725 79974725 1 + G A UCEC 79974726 + 79974706 79974746 41 ATGCCATCTCCCCATCTGCGGCCGATGTGCTGGTGGCCAGG ATGCCATCTCCCCATCTGCAGCCGATGTGCTGGTGGCCAGG < 41bp 0.47577597495722 0.702688087315073 NA NA prediction 0.405376174630147 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79974726 chr17:79974725 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_35703 0 0 1 0 2 ASPSCR1 chr17:79974745 5'GT 79974745 Upstream 21bp 32821 chr5 146703621 146703621 1 + C T UCEC 146703622 + 146703602 146703642 41 GGACTACCTGCAGAACCAGCGCATCATTCACAGGTCAGTCA GGACTACCTGCAGAACCAGTGCATCATTCACAGGTCAGTCA < 41bp 0.536869534042797 0.73955580976826 NA NA prediction 0.405372551450926 Functional Gain - STK32A ENSG00000169302 CDS Human protein_coding chr5:146703622 chr5:146703621 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_35705 0 0 0 0 1 STK32A chr5:146703634 5'GT 146703634 Upstream 14bp 32822 chr12 132281820 132281820 1 + C T STAD 132281821 + 132281801 132281841 41 CAGCAAGCAGGCAGCGCCCCGGCCCGCGGCCCCCGCGGCCC CAGCAAGCAGGCAGCGCCCTGGCCCGCGGCCCCCGCGGCCC < 41bp 0.502036894718627 0.704721350305751 NA NA prediction 0.405368911174249 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281821 chr12:132281820 nonsynonymous SNV 0.008 2 20 hm7G_associated_SNPs_35707 0 0 1 0 2 SFSWAP chr12:132281723 3'AG 132281723 Downstream 98bp 32823 chr12 132281820 132281820 1 + C T STAD 132281821 + 132281801 132281841 41 CAGCAAGCAGGCAGCGCCCCGGCCCGCGGCCCCCGCGGCCC CAGCAAGCAGGCAGCGCCCTGGCCCGCGGCCCCCGCGGCCC < 41bp 0.502036894718627 0.704721350305751 NA NA prediction 0.405368911174249 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132281821 chr12:132281820 nonsynonymous SNV 0.008 2 20 hm7G_associated_SNPs_35707 0 0 1 0 2 SFSWAP chr12:132281905 5'GT 132281905 Upstream 86bp 32824 chr2 179320876 179320876 1 + C T PRAD 179320877 + 179320857 179320897 41 AATTCGAGGGGAAGCAATGCGGGTAAACCACACTTGTTGGG AATTCGAGGGGAAGCAATGTGGGTAAACCACACTTGTTGGG < 41bp 0.529476917162252 0.732160170720469 NA NA prediction 0.405366507116434 Functional Gain - DFNB59 ENSG00000204311 CDS Human protein_coding chr2:179320877 chr2:179320876 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_35708 1 0 0 0 1 DFNB59 chr2:179320878 5'GT 179320878 Upstream 3bp 32825 chr11 67254624 67254624 1 + G A SKCM 67254625 + 67254605 67254645 41 CGTGTGCACCATGCGAGAAGGGGAGATTGCCCAGTTCCTCT CGTGTGCACCATGCGAGAAAGGGAGATTGCCCAGTTCCTCT < 41bp 0.549831839307997 0.752512094208533 NA NA prediction 0.405360509801071 Functional Gain - AIP ENSG00000110711 CDS Human protein_coding chr11:67254625 chr11:67254624 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_35710 0 0 1 0 1 AIP chr11:67254656 5'GT 67254656 Upstream 33bp 32826 chr6 39041466 39041466 1 + C T STAD 39041467 + 39041447 39041487 41 ACTGGCTCTTGGTGGAGGGCGTGTACCTGTACACACTGCTG ACTGGCTCTTGGTGGAGGGTGTGTACCTGTACACACTGCTG < 41bp 0.506695521589587 0.709373058445349 NA NA prediction 0.405355073711523 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39041467 chr6:39041466 synonymous SNV . 0 20 hm7G_associated_SNPs_35711 0 0 0 0 2 GLP1R chr6:39041386 3'AG 39041386 Downstream 81bp 32827 chr6 39041466 39041466 1 + C T STAD 39041467 + 39041447 39041487 41 ACTGGCTCTTGGTGGAGGGCGTGTACCTGTACACACTGCTG ACTGGCTCTTGGTGGAGGGTGTGTACCTGTACACACTGCTG < 41bp 0.506695521589587 0.709373058445349 NA NA prediction 0.405355073711523 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39041467 chr6:39041466 synonymous SNV . 0 20 hm7G_associated_SNPs_35711 0 0 0 0 2 GLP1R chr6:39041545 5'GT 39041545 Upstream 80bp 32828 chr2 73900104 73900104 1 + G A CESC 73900105 + 73900085 73900125 41 GGGCAGCACCTGGACAGTCGGGGCTACCTGGCAGGCCCAGG GGGCAGCACCTGGACAGTCAGGGCTACCTGGCAGGCCCAGG < 41bp 0.49963627281884 0.702675088784714 NA NA prediction 0.405350177569428 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human other chr2:73900105 chr2:73900104 . . 0 20 hm7G_associated_SNPs_35712 0 0 0 0 1 ALMS1P1 chr2:73900177 5'GT 73900177 Upstream 74bp 32829 chr20 43550284 43550284 1 + C T COAD 43550285 + 43550265 43550305 41 AGCGGGCGGCTGCTGTACGCGGGCCGGGCCCAAAAGCGCGT AGCGGGCGGCTGCTGTACGTGGGCCGGGCCCAAAAGCGCGT < 41bp 0.521290254600774 0.723964063412514 NA NA prediction 0.40534761762348 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43550285 chr20:43550284 nonsynonymous SNV 0.108 0 20 hm7G_associated_SNPs_35713 0 0 1 0 2 PABPC1L chr20:43550235 3'AG 43550235 Downstream 50bp 32830 chr20 43550284 43550284 1 + C T COAD 43550285 + 43550265 43550305 41 AGCGGGCGGCTGCTGTACGCGGGCCGGGCCCAAAAGCGCGT AGCGGGCGGCTGCTGTACGTGGGCCGGGCCCAAAAGCGCGT < 41bp 0.521290254600774 0.723964063412514 NA NA prediction 0.40534761762348 Functional Gain - PABPC1L ENSG00000101104 CDS Human protein_coding chr20:43550285 chr20:43550284 nonsynonymous SNV 0.108 0 20 hm7G_associated_SNPs_35713 0 0 1 0 2 PABPC1L chr20:43550372 5'GT 43550372 Upstream 89bp 32831 chr18 13096282 13096282 1 + C T BLCA 13096283 + 13096263 13096303 41 CATTGCCTCACAGTCACGCCGCAGCATGGATGTGTCGCGCC CATTGCCTCACAGTCACGCTGCAGCATGGATGTGTCGCGCC < 41bp 0.516627888484548 0.719301577140541 NA NA prediction 0.405347377311986 Functional Gain - CEP192 ENSG00000101639 CDS Human protein_coding chr18:13096283 chr18:13096282 nonsynonymous SNV 0.647 4 20 hm7G_associated_SNPs_35714 0 0 1 0 1 CEP192 chr18:13096183 3'AG 13096183 Downstream 100bp 32832 chr3 69986987 69986987 1 + C T COAD 69986988 + 69986968 69987008 41 TTCAGGTGCAGACCCACCTCGAAAACCCCACCAAGTACCAC TTCAGGTGCAGACCCACCTTGAAAACCCCACCAAGTACCAC < 41bp 0.527234739183033 0.729906440727152 NA NA prediction 0.405343403088238 Functional Gain - MITF ENSG00000187098 CDS Human protein_coding chr3:69986988 chr3:69986987 synonymous SNV . 0 20 hm7G_associated_SNPs_35715 0 0 1 0 2 MITF chr3:69986973 3'AG 69986973 Downstream 15bp 32833 chr3 69986987 69986987 1 + C T COAD 69986988 + 69986968 69987008 41 TTCAGGTGCAGACCCACCTCGAAAACCCCACCAAGTACCAC TTCAGGTGCAGACCCACCTTGAAAACCCCACCAAGTACCAC < 41bp 0.527234739183033 0.729906440727152 NA NA prediction 0.405343403088238 Functional Gain - MITF ENSG00000187098 CDS Human protein_coding chr3:69986988 chr3:69986987 synonymous SNV . 0 20 hm7G_associated_SNPs_35715 0 0 1 0 2 MITF chr3:69987032 5'GT 69987032 Upstream 46bp 32834 chr19 55333055 55333055 1 + G A SKCM 55333056 + 55333036 55333076 41 TTCTCTCTCAGCCCAGCCGGGCCCCAAGGTTCAGGCAGGAG TTCTCTCTCAGCCCAGCCGAGCCCCAAGGTTCAGGCAGGAG < 41bp 0.48636448834116 0.702671455252645 NA NA prediction 0.40534291050529 Functional Gain - KIR3DL1 ENSG00000167633 CDS Human protein_coding chr19:55333056 chr19:55333055 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_35717 0 0 0 0 1 KIR3DL1 chr19:55333020 3'AG 55333020 Downstream 36bp 32835 chr2 219296835 219296835 1 + G A SARC 219296836 + 219296816 219296856 41 GCTAGGCCACTTCTATGGGGGCGACTGCTACCTGCTGCTCT GCTAGGCCACTTCTATGGGAGCGACTGCTACCTGCTGCTCT < 41bp 0.486667684200757 0.702670852058267 NA NA prediction 0.405341704116533 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219296836 chr2:219296835 nonsynonymous SNV 0.705 4 20 hm7G_associated_SNPs_35719 0 0 1 0 2 VIL1 chr2:219296769 3'AG 219296769 Downstream 67bp 32836 chr2 219296835 219296835 1 + G A SARC 219296836 + 219296816 219296856 41 GCTAGGCCACTTCTATGGGGGCGACTGCTACCTGCTGCTCT GCTAGGCCACTTCTATGGGAGCGACTGCTACCTGCTGCTCT < 41bp 0.486667684200757 0.702670852058267 NA NA prediction 0.405341704116533 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219296836 chr2:219296835 nonsynonymous SNV 0.705 4 20 hm7G_associated_SNPs_35719 0 0 1 0 2 VIL1 chr2:219296906 5'GT 219296906 Upstream 72bp 32837 chr15 76222353 76222353 1 + G T GBM 76222354 + 76222334 76222374 41 GAATATCATCTTGGCTGGAGGCCAGGTGGACAACCTGTCAT GAATATCATCTTGGCTGGATGCCAGGTGGACAACCTGTCAT < 41bp 0.701784671570525 0.904454515738278 NA NA prediction 0.405339688335505 Functional Gain - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76222354 chr15:76222353 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_35721 0 0 1 0 1 FBXO22 chr15:76222390 5'GT 76222390 Upstream 38bp 32838 chr7 141420740 141420740 1 + C T SARC 141420741 + 141420721 141420761 41 TTTCTGTCTCATAGGAATTCGGCTTTGCATGAAGTTTATGC TTTCTGTCTCATAGGAATTTGGCTTTGCATGAAGTTTATGC < 41bp 0.532435835782283 0.735104671255552 NA NA prediction 0.405337670946537 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141420741 chr7:141420740 nonsynonymous SNV 0.923 0 20 hm7G_associated_SNPs_35722 0 0 0 0 1 WEE2 chr7:141420735 3'AG 141420735 Downstream 6bp 32839 chr5 176295869 176295869 1 + C T STAD 176295870 + 176295850 176295890 41 GGAGCACAGCCTGGTGGTGCGACAGGCCCGCCTTGCTGACA GGAGCACAGCCTGGTGGTGTGACAGGCCCGCCTTGCTGACA < 41bp 0.4881040614768 0.702668749141176 NA NA prediction 0.405337498282353 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295870 chr5:176295869 stopgain 0.999 1 20 hm7G_associated_SNPs_35723 0 0 0 0 2 UNC5A chr5:176295785 3'AG 176295785 Downstream 85bp 32840 chr5 176295869 176295869 1 + C T STAD 176295870 + 176295850 176295890 41 GGAGCACAGCCTGGTGGTGCGACAGGCCCGCCTTGCTGACA GGAGCACAGCCTGGTGGTGTGACAGGCCCGCCTTGCTGACA < 41bp 0.4881040614768 0.702668749141176 NA NA prediction 0.405337498282353 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295870 chr5:176295869 stopgain 0.999 1 20 hm7G_associated_SNPs_35723 0 0 0 0 2 UNC5A chr5:176295965 5'GT 176295965 Upstream 97bp 32841 chr21 45825049 45825049 1 + G A DLBC 45825050 + 45825030 45825070 41 CTATGACCCTGACGAGTGCGGGCTGATGAAGAAGGCAGCCT CTATGACCCTGACGAGTGCAGGCTGATGAAGAAGGCAGCCT < 41bp 0.551873273523872 0.754541804716631 NA NA prediction 0.405337062385517 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45825050 chr21:45825049 nonsynonymous SNV 0.057 1 20 hm7G_associated_SNPs_35724 0 0 0 0 3 TRPM2 chr21:45825022 3'AG 45825022 Downstream 28bp 32842 chr21 45825049 45825049 1 + G A DLBC 45825050 + 45825030 45825070 41 CTATGACCCTGACGAGTGCGGGCTGATGAAGAAGGCAGCCT CTATGACCCTGACGAGTGCAGGCTGATGAAGAAGGCAGCCT < 41bp 0.551873273523872 0.754541804716631 NA NA prediction 0.405337062385517 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45825050 chr21:45825049 nonsynonymous SNV 0.057 1 20 hm7G_associated_SNPs_35724 0 0 0 0 3 TRPM2 chr21:45825025 3'AG 45825025 Downstream 25bp 32843 chr21 45825049 45825049 1 + G A DLBC 45825050 + 45825030 45825070 41 CTATGACCCTGACGAGTGCGGGCTGATGAAGAAGGCAGCCT CTATGACCCTGACGAGTGCAGGCTGATGAAGAAGGCAGCCT < 41bp 0.551873273523872 0.754541804716631 NA NA prediction 0.405337062385517 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45825050 chr21:45825049 nonsynonymous SNV 0.057 1 20 hm7G_associated_SNPs_35724 0 0 0 0 3 TRPM2 chr21:45825143 5'GT 45825143 Upstream 95bp 32844 chr12 64458987 64458987 1 + C T rs112908570 64458988 + 64458968 64459008 41 GCCTTGCCACGCTCAAAATCGAGAATGAAGAGGTGAGCATG GCCTTGCCACGCTCAAAATTGAGAATGAAGAGGTGAGCATG < 41bp 0.512207909030691 0.71487414704222 NA NA prediction 0.405332476023057 Functional Gain - SRGAP1 ENSG00000196935 CDS Human protein_coding chr12:64458988 chr12:64458987 synonymous SNV . 0 20 hm7G_associated_SNPs_35726 0 0 0 0 2 SRGAP1 chr12:64458898 3'AG 64458898 Downstream 90bp 32845 chr12 64458987 64458987 1 + C T rs112908570 64458988 + 64458968 64459008 41 GCCTTGCCACGCTCAAAATCGAGAATGAAGAGGTGAGCATG GCCTTGCCACGCTCAAAATTGAGAATGAAGAGGTGAGCATG < 41bp 0.512207909030691 0.71487414704222 NA NA prediction 0.405332476023057 Functional Gain - SRGAP1 ENSG00000196935 CDS Human protein_coding chr12:64458988 chr12:64458987 synonymous SNV . 0 20 hm7G_associated_SNPs_35726 0 0 0 0 2 SRGAP1 chr12:64458999 5'GT 64458999 Upstream 13bp 32846 chrX 65478819 65478819 1 + C T CESC 65478820 + 65478800 65478840 41 TGCAGAGAGCTTCCTCTATCGGGTGAGCTGGAAAATGGGCT TGCAGAGAGCTTCCTCTATTGGGTGAGCTGGAAAATGGGCT < 41bp 0.536195155651214 0.738858154767242 NA NA prediction 0.405325998232057 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65478820 chrX:65478819 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35729 0 0 0 0 1 HEPH chrX:65478821 5'GT 65478821 Upstream 3bp 32847 chr8 21959774 21959774 1 + C T CESC 21959775 + 21959755 21959795 41 CATGAGTACCTGCTGGATCCGTACATCAGCCTGGCCCCCGG CATGAGTACCTGCTGGATCTGTACATCAGCCTGGCCCCCGG < 41bp 0.519947060095726 0.722608414735488 NA NA prediction 0.405322709279526 Functional Gain - FAM160B2 ENSG00000158863 CDS Human protein_coding chr8:21959775 chr8:21959774 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_35731 0 0 0 1 1 FAM160B2 chr8:21959686 3'AG 21959686 Downstream 89bp 32848 chr16 1836845 1836845 1 + G A STAD 1836846 + 1836826 1836866 41 TGTGCACCAGTGCGACCGCGGCTGGGCACCCGTCTTCCTGG TGTGCACCAGTGCGACCGCAGCTGGGCACCCGTCTTCCTGG < 41bp 0.471393718809594 0.702661262957434 NA NA prediction 0.405322525914869 Functional Gain - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1836846 chr16:1836845 nonsynonymous SNV 0.502 4 20 hm7G_associated_SNPs_35732 0 0 1 0 1 NUBP2 chr16:1836758 3'AG 1836758 Downstream 88bp 32849 chr9 132637006 132637006 1 + C T BLCA 132637007 + 132636987 132637027 41 ACCACCTACGACCTCCTCTCGGTCATCTGCCACCACGGCAC ACCACCTACGACCTCCTCTTGGTCATCTGCCACCACGGCAC < 41bp 0.519354930518981 0.722015611985013 NA NA prediction 0.405321362932065 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132637007 chr9:132637006 nonsynonymous SNV 0.765 2 20 hm7G_associated_SNPs_35733 0 0 1 0 1 USP20 chr9:132637035 5'GT 132637035 Upstream 30bp 32850 chr9 96422788 96422788 1 + C T rs73523907 96422789 + 96422769 96422809 41 TCCCCAACCTGGACCTGCTCGAAGCCCACACCAAGGAGGCA TCCCCAACCTGGACCTGCTTGAAGCCCACACCAAGGAGGCA < 41bp 0.554773628026349 0.757433116532439 NA NA prediction 0.40531897701218 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96422789 chr9:96422788 synonymous SNV . 0 20 hm7G_associated_SNPs_35735 0 0 1 0 1 PHF2 chr9:96422842 5'GT 96422842 Upstream 55bp 32851 chr5 60821647 60821647 1 + C T COAD 60821648 + 60821628 60821668 41 TTCATCGAACAGGCCACATCGGACAGTGTTCACCCGAGCCA TTCATCGAACAGGCCACATTGGACAGTGTTCACCCGAGCCA < 41bp 0.547592933230129 0.750251545363847 NA NA prediction 0.405317224267436 Functional Gain - ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60821648 chr5:60821647 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35737 0 0 0 0 1 ZSWIM6 chr5:60821627 3'AG 60821627 Downstream 21bp 32852 chr19 35550675 35550675 1 - G A COAD 35550674 - 35550654 35550694 41 ATCTCCTCGCAGCTGAGTCCGGCTACCCTGGCGTTGGAGCG ATCTCCTCGCAGCTGAGTCTGGCTACCCTGGCGTTGGAGCG < 41bp 0.522136587245427 0.724795109639377 NA NA prediction 0.4053170447879 Functional Gain - HPN ENSG00000105707 CDS Human protein_coding chr19:35550674 chr19:35550675 nonsynonymous SNV 0.113 0 20 hm7G_associated_SNPs_35738 0 0 0 0 1 HPN chr19:35550682 3'AG 35550682 Downstream 8bp 32853 chr17 47246168 47246168 1 + G A UCEC 47246169 + 47246149 47246189 41 ATGGCTTCCCCAGCTGCGTGGTGACCAGTGGCGTGGTCAAC ATGGCTTCCCCAGCTGCGTAGTGACCAGTGGCGTGGTCAAC < 41bp 0.532111979376128 0.734769890059562 NA NA prediction 0.405315821366868 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47246169 chr17:47246168 synonymous SNV . 0 20 hm7G_associated_SNPs_35739 0 0 0 0 1 B4GALNT2 chr17:47246262 5'GT 47246262 Upstream 95bp 32854 chr1 15893704 15893704 1 + C T COAD 15893705 + 15893685 15893725 41 AATGTGGTCCTCATCCTGTCGAATTCTACCAAGACCAGCCT AATGTGGTCCTCATCCTGTTGAATTCTACCAAGACCAGCCT < 41bp 0.512739566186113 0.715396405055501 NA NA prediction 0.405313677738776 Functional Gain - DNAJC16 ENSG00000116138 CDS Human protein_coding chr1:15893705 chr1:15893704 nonsynonymous SNV 0.992 3 20 hm7G_associated_SNPs_35740 0 0 1 0 1 DNAJC16 chr1:15893764 5'GT 15893764 Upstream 61bp 32855 chr16 70500085 70500085 1 + C T UVM 70500086 + 70500066 70500106 41 GGGCTTTCACCTGCCTCCCCGTGGAGAACCCCGAGGCCCCC GGGCTTTCACCTGCCTCCCTGTGGAGAACCCCGAGGCCCCC < 41bp 0.510945751403295 0.713602260874343 NA NA prediction 0.405313018942095 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70500086 chr16:70500085 synonymous SNV . 0 20 hm7G_associated_SNPs_35741 0 0 1 0 1 FUK chr16:70500160 5'GT 70500160 Upstream 76bp 32856 chr2 120776703 120776703 1 + C T COAD 120776704 + 120776684 120776724 41 ACTAGGGCGTCGGTCTATGCGTAAACATGCAGAGAAGGAAC ACTAGGGCGTCGGTCTATGTGTAAACATGCAGAGAAGGAAC < 41bp 0.509567341477198 0.712221916862717 NA NA prediction 0.405309150771039 Functional Gain - EPB41L5 ENSG00000115109 CDS Human protein_coding chr2:120776704 chr2:120776703 nonsynonymous SNV 0.982 5 20 hm7G_associated_SNPs_35742 0 0 0 0 1 EPB41L5 chr2:120776653 3'AG 120776653 Downstream 51bp 32857 chr1 113266642 113266642 1 + C T SKCM 113266643 + 113266623 113266663 41 CTGCTCCCACAGCCTCCATCGTCCTGCAGAGATGGTGGTGT CTGCTCCCACAGCCTCCATTGTCCTGCAGAGATGGTGGTGT < 41bp 0.51175192640375 0.714406122333206 NA NA prediction 0.405308391858912 Functional Gain - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113266643 chr1:113266642 nonsynonymous SNV 0.971 0 20 hm7G_associated_SNPs_35743 0 0 0 0 3 FAM19A3 chr1:113266567 3'AG 113266567 Downstream 76bp 32858 chr1 113266642 113266642 1 + C T SKCM 113266643 + 113266623 113266663 41 CTGCTCCCACAGCCTCCATCGTCCTGCAGAGATGGTGGTGT CTGCTCCCACAGCCTCCATTGTCCTGCAGAGATGGTGGTGT < 41bp 0.51175192640375 0.714406122333206 NA NA prediction 0.405308391858912 Functional Gain - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113266643 chr1:113266642 nonsynonymous SNV 0.971 0 20 hm7G_associated_SNPs_35743 0 0 0 0 3 FAM19A3 chr1:113266598 3'AG 113266598 Downstream 45bp 32859 chr1 113266642 113266642 1 + C T SKCM 113266643 + 113266623 113266663 41 CTGCTCCCACAGCCTCCATCGTCCTGCAGAGATGGTGGTGT CTGCTCCCACAGCCTCCATTGTCCTGCAGAGATGGTGGTGT < 41bp 0.51175192640375 0.714406122333206 NA NA prediction 0.405308391858912 Functional Gain - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113266643 chr1:113266642 nonsynonymous SNV 0.971 0 20 hm7G_associated_SNPs_35743 0 0 0 0 3 FAM19A3 chr1:113266635 3'AG 113266635 Downstream 8bp 32860 chr12 100685365 100685365 1 + C T UCEC 100685366 + 100685346 100685386 41 AATCATTGATTCTCTAAAACGAGGAGTCCAACAGTTAACTC AATCATTGATTCTCTAAAATGAGGAGTCCAACAGTTAACTC < 41bp 0.492054919960311 0.702653579216067 NA NA prediction 0.405307158432133 Functional Gain - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100685366 chr12:100685365 stopgain 0.999 1 20 hm7G_associated_SNPs_35744 0 0 1 0 2 SCYL2 chr12:100685281 3'AG 100685281 Downstream 85bp 32861 chr12 100685365 100685365 1 + C T UCEC 100685366 + 100685346 100685386 41 AATCATTGATTCTCTAAAACGAGGAGTCCAACAGTTAACTC AATCATTGATTCTCTAAAATGAGGAGTCCAACAGTTAACTC < 41bp 0.492054919960311 0.702653579216067 NA NA prediction 0.405307158432133 Functional Gain - SCYL2 ENSG00000136021 CDS Human protein_coding chr12:100685366 chr12:100685365 stopgain 0.999 1 20 hm7G_associated_SNPs_35744 0 0 1 0 2 SCYL2 chr12:100685438 5'GT 100685438 Upstream 74bp 32862 chr19 55424096 55424096 1 + C T UCEC 55424097 + 55424077 55424117 41 CACTGCCCAGAATCTCCTTCGGATGGGCCTGGCCTTTCTAG CACTGCCCAGAATCTCCTTTGGATGGGCCTGGCCTTTCTAG < 41bp 0.498567521149582 0.702651612838141 NA NA prediction 0.405303225676282 Functional Gain - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55424097 chr19:55424096 nonsynonymous SNV 0.034 3 20 hm7G_associated_SNPs_35747 0 0 0 0 1 NCR1 chr19:55424058 3'AG 55424058 Downstream 39bp 32863 chr14 105209473 105209473 1 + G A COAD 105209474 + 105209454 105209494 41 AGGCAGGAAGAGGCGCTGCGGCTGGCTCGACCTGATGATTC AGGCAGGAAGAGGCGCTGCAGCTGGCTCGACCTGATGATTC < 41bp 0.544770370256666 0.747421564314813 NA NA prediction 0.405302388116294 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105209474 chr14:105209473 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_35748 0 0 0 0 2 ADSSL1 chr14:105209404 3'AG 105209404 Downstream 70bp 32864 chr14 105209473 105209473 1 + G A COAD 105209474 + 105209454 105209494 41 AGGCAGGAAGAGGCGCTGCGGCTGGCTCGACCTGATGATTC AGGCAGGAAGAGGCGCTGCAGCTGGCTCGACCTGATGATTC < 41bp 0.544770370256666 0.747421564314813 NA NA prediction 0.405302388116294 Functional Gain - ADSSL1 ENSG00000185100 CDS Human protein_coding chr14:105209474 chr14:105209473 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_35748 0 0 0 0 2 ADSSL1 chr14:105209528 5'GT 105209528 Upstream 56bp 32865 chr14 78397959 78397959 1 + C T STAD 78397960 + 78397940 78397980 41 TGCTCATCTTGAAGACCAACGACCTGCTGCGTGGCATTGAG TGCTCATCTTGAAGACCAATGACCTGCTGCGTGGCATTGAG < 41bp 0.491895226173042 0.702649695407245 NA NA prediction 0.405299390814491 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78397960 chr14:78397959 synonymous SNV . 0 20 hm7G_associated_SNPs_35749 0 0 0 0 2 ADCK1 chr14:78397861 3'AG 78397861 Downstream 99bp 32866 chr14 78397959 78397959 1 + C T STAD 78397960 + 78397940 78397980 41 TGCTCATCTTGAAGACCAACGACCTGCTGCGTGGCATTGAG TGCTCATCTTGAAGACCAATGACCTGCTGCGTGGCATTGAG < 41bp 0.491895226173042 0.702649695407245 NA NA prediction 0.405299390814491 Functional Gain - ADCK1 ENSG00000063761 CDS Human protein_coding chr14:78397960 chr14:78397959 synonymous SNV . 0 20 hm7G_associated_SNPs_35749 0 0 0 0 2 ADCK1 chr14:78398054 5'GT 78398054 Upstream 96bp 32867 chr8 11614568 11614568 1 + C T UCEC 11614569 + 11614549 11614589 41 CTGGCCTGTCATCTCACTACGGGCACAGCAGCTCCGTGTCC CTGGCCTGTCATCTCACTATGGGCACAGCAGCTCCGTGTCC < 41bp 0.52005707208896 0.722705804968759 NA NA prediction 0.405297465759598 Functional Gain - GATA4 ENSG00000136574 CDS Human protein_coding chr8:11614569 chr8:11614568 synonymous SNV . 0 20 hm7G_associated_SNPs_35750 1 0 1 0 1 GATA4 chr8:11614592 5'GT 11614592 Upstream 25bp 32868 chr1 110168842 110168842 1 + G A COAD 110168843 + 110168823 110168863 41 TGAAGACGGACAGTGACTCGGACCTACAGTGAGGAGGGCAG TGAAGACGGACAGTGACTCAGACCTACAGTGAGGAGGGCAG < 41bp 0.534734203623414 0.737381839609379 NA NA prediction 0.40529527197193 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168843 chr1:110168842 synonymous SNV . 0 20 hm7G_associated_SNPs_35752 0 0 1 0 2 AMPD2 chr1:110168782 3'AG 110168782 Downstream 61bp 32869 chr1 110168842 110168842 1 + G A COAD 110168843 + 110168823 110168863 41 TGAAGACGGACAGTGACTCGGACCTACAGTGAGGAGGGCAG TGAAGACGGACAGTGACTCAGACCTACAGTGAGGAGGGCAG < 41bp 0.534734203623414 0.737381839609379 NA NA prediction 0.40529527197193 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168843 chr1:110168842 synonymous SNV . 0 20 hm7G_associated_SNPs_35752 0 0 1 0 2 AMPD2 chr1:110168850 5'GT 110168850 Upstream 9bp 32870 chr17 72815930 72815930 1 + C T LUAD 72815931 + 72815911 72815951 41 GACCGTTCACCTTCTTTGACGTCCAGAAGACCAAGTACCTG GACCGTTCACCTTCTTTGATGTCCAGAAGACCAAGTACCTG < 41bp 0.510289351134783 0.712936636836646 NA NA prediction 0.405294571403725 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72815931 chr17:72815930 synonymous SNV . 0 20 hm7G_associated_SNPs_35753 0 0 1 0 2 TMEM104 chr17:72815889 3'AG 72815889 Downstream 42bp 32871 chr17 72815930 72815930 1 + C T LUAD 72815931 + 72815911 72815951 41 GACCGTTCACCTTCTTTGACGTCCAGAAGACCAAGTACCTG GACCGTTCACCTTCTTTGATGTCCAGAAGACCAAGTACCTG < 41bp 0.510289351134783 0.712936636836646 NA NA prediction 0.405294571403725 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72815931 chr17:72815930 synonymous SNV . 0 20 hm7G_associated_SNPs_35753 0 0 1 0 2 TMEM104 chr17:72815982 5'GT 72815982 Upstream 53bp 32872 chr19 57908460 57908460 1 + G T BLCA 57908461 + 57908441 57908481 41 CCATATATTTCTCCCAGGAGGAGTGGGGGCACCTTGATGAG CCATATATTTCTCCCAGGATGAGTGGGGGCACCTTGATGAG < 41bp 0.70141888172983 0.904065663098414 NA NA prediction 0.405293562737168 Functional Gain - ZNF548 ENSG00000188785;ENSG00000269533 CDS Human other chr19:57908461 chr19:57908460 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_35754 0 0 1 0 2 ZNF548 chr19:57908416 3'AG 57908416 Downstream 45bp 32873 chr19 57908460 57908460 1 + G T BLCA 57908461 + 57908441 57908481 41 CCATATATTTCTCCCAGGAGGAGTGGGGGCACCTTGATGAG CCATATATTTCTCCCAGGATGAGTGGGGGCACCTTGATGAG < 41bp 0.70141888172983 0.904065663098414 NA NA prediction 0.405293562737168 Functional Gain - ZNF548 ENSG00000188785;ENSG00000269533 CDS Human other chr19:57908461 chr19:57908460 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_35754 0 0 1 0 2 ZNF548 chr19:57908542 5'GT 57908542 Upstream 83bp 32874 chr9 2647572 2647572 1 + G T COAD 2647573 + 2647553 2647593 41 GTGACAGCGGATATCCAGTGGCCTAACGGAATTACACTTGG GTGACAGCGGATATCCAGTTGCCTAACGGAATTACACTTGG < 41bp 0.35632745983174 0.702644869908086 NA NA prediction 0.405289739816171 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2647573 chr9:2647572 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35755 0 0 1 0 2 VLDLR chr9:2647474 3'AG 2647474 Downstream 99bp 32875 chr9 2647572 2647572 1 + G T COAD 2647573 + 2647553 2647593 41 GTGACAGCGGATATCCAGTGGCCTAACGGAATTACACTTGG GTGACAGCGGATATCCAGTTGCCTAACGGAATTACACTTGG < 41bp 0.35632745983174 0.702644869908086 NA NA prediction 0.405289739816171 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2647573 chr9:2647572 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35755 0 0 1 0 2 VLDLR chr9:2647592 5'GT 2647592 Upstream 21bp 32876 chr19 736056 736056 1 + C T UCEC 736057 + 736037 736077 41 CGCCCCTGAGGACGGTTGACGGCTCCCCCATGATGAAGGCA CGCCCCTGAGGACGGTTGATGGCTCCCCCATGATGAAGGCA < 41bp 0.530530099677025 0.733173907428813 NA NA prediction 0.405287615503576 Functional Gain - PALM ENSG00000099864 CDS Human protein_coding chr19:736057 chr19:736056 synonymous SNV . 0 20 hm7G_associated_SNPs_35756 0 0 1 0 2 PALM chr19:736019 3'AG 736019 Downstream 38bp 32877 chr19 736056 736056 1 + C T UCEC 736057 + 736037 736077 41 CGCCCCTGAGGACGGTTGACGGCTCCCCCATGATGAAGGCA CGCCCCTGAGGACGGTTGATGGCTCCCCCATGATGAAGGCA < 41bp 0.530530099677025 0.733173907428813 NA NA prediction 0.405287615503576 Functional Gain - PALM ENSG00000099864 CDS Human protein_coding chr19:736057 chr19:736056 synonymous SNV . 0 20 hm7G_associated_SNPs_35756 0 0 1 0 2 PALM chr19:736078 5'GT 736078 Upstream 23bp 32878 chr16 19041653 19041653 1 + C T SKCM 19041654 + 19041634 19041674 41 CGTATTTGTTAAGCACAATCGCCTCCCTGGCCCTGAGCCTT CGTATTTGTTAAGCACAATTGCCTCCCTGGCCCTGAGCCTT < 41bp 0.5468026330663 0.749442695901379 NA NA prediction 0.405280125670158 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19041654 chr16:19041653 synonymous SNV . 0 20 hm7G_associated_SNPs_35759 0 0 0 0 1 TMC7 chr16:19041691 5'GT 19041691 Upstream 39bp 32879 chr11 66190147 66190147 1 + C T SKCM 66190148 + 66190128 66190168 41 TCTCTTCATCTATCTAGATCGCCTCTTCCGCTGCCGCTTCA TCTCTTCATCTATCTAGATTGCCTCTTCCGCTGCCGCTTCA < 41bp 0.549086143165459 0.751725123479211 NA NA prediction 0.405277960627505 Functional Gain - NPAS4 ENSG00000174576 CDS Human protein_coding chr11:66190148 chr11:66190147 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_35760 0 0 0 0 1 NPAS4 chr11:66190145 3'AG 66190145 Downstream 3bp 32880 chr15 40683720 40683720 1 + C T UCEC 40683721 + 40683701 40683741 41 CAGTGAGACCCTGGCATCACGACAAGAATCCACTACTGATC CAGTGAGACCCTGGCATCATGACAAGAATCCACTACTGATC < 41bp 0.511746567323425 0.714379043767685 NA NA prediction 0.405264952888521 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40683721 chr15:40683720 stopgain 0.019 0 20 hm7G_associated_SNPs_35765 0 0 1 0 2 KNSTRN chr15:40683694 3'AG 40683694 Downstream 27bp 32881 chr15 40683720 40683720 1 + C T UCEC 40683721 + 40683701 40683741 41 CAGTGAGACCCTGGCATCACGACAAGAATCCACTACTGATC CAGTGAGACCCTGGCATCATGACAAGAATCCACTACTGATC < 41bp 0.511746567323425 0.714379043767685 NA NA prediction 0.405264952888521 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40683721 chr15:40683720 stopgain 0.019 0 20 hm7G_associated_SNPs_35765 0 0 1 0 2 KNSTRN chr15:40683755 5'GT 40683755 Upstream 36bp 32882 chr20 42893133 42893133 1 + G A LUSC 42893134 + 42893114 42893154 41 CTACCTGAAGAAGATCCTCGGGGAACTGGCCATGGTGCTGG CTACCTGAAGAAGATCCTCAGGGAACTGGCCATGGTGCTGG < 41bp 0.54508107833289 0.74771322058024 NA NA prediction 0.4052642844947 Functional Gain - GDAP1L1 ENSG00000124194 CDS Human protein_coding chr20:42893134 chr20:42893133 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_35766 0 0 0 0 1 GDAP1L1 chr20:42893085 3'AG 42893085 Downstream 49bp 32883 chr10 13217636 13217636 1 + C T rs35586085 13217637 + 13217617 13217657 41 CCAGGAAGTTCTGGGGAAACGACTCAACCCATCTGTGTGGA CCAGGAAGTTCTGGGGAAATGACTCAACCCATCTGTGTGGA < 41bp 0.53578687419343 0.738418018116573 NA NA prediction 0.405262287846284 Functional Gain - MCM10 ENSG00000065328 CDS Human protein_coding chr10:13217637 chr10:13217636 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_35767 0 0 1 0 1 MCM10 chr10:13217681 5'GT 13217681 Upstream 46bp 32884 chr3 10861224 10861224 1 + G A LUSC 10861225 + 10861205 10861245 41 TTTCCTGGAGACAGCTCTGGGGCAGTTCACAAGTGAAGGTG TTTCCTGGAGACAGCTCTGAGGCAGTTCACAAGTGAAGGTG < 41bp 0.520908266225069 0.723538568841763 NA NA prediction 0.405260605233388 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10861225 chr3:10861224 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35769 0 0 1 0 2 SLC6A11 chr3:10861150 3'AG 10861150 Downstream 75bp 32885 chr3 10861224 10861224 1 + G A LUSC 10861225 + 10861205 10861245 41 TTTCCTGGAGACAGCTCTGGGGCAGTTCACAAGTGAAGGTG TTTCCTGGAGACAGCTCTGAGGCAGTTCACAAGTGAAGGTG < 41bp 0.520908266225069 0.723538568841763 NA NA prediction 0.405260605233388 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10861225 chr3:10861224 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35769 0 0 1 0 2 SLC6A11 chr3:10861284 5'GT 10861284 Upstream 61bp 32886 chrX 65427138 65427138 1 + G A BLCA 65427139 + 65427119 65427159 41 GGTACATTCAGGATCCCTCGGCCAAGGACTGGACCAGAAGA GGTACATTCAGGATCCCTCAGCCAAGGACTGGACCAGAAGA < 41bp 0.518152475305822 0.720782067923003 NA NA prediction 0.405259185234362 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65427139 chrX:65427138 nonsynonymous SNV 0.906 1 20 hm7G_associated_SNPs_35770 0 0 1 0 1 HEPH chrX:65427176 5'GT 65427176 Upstream 39bp 32887 chr2 167056312 167056312 1 - G A SKCM 167056311 - 167056291 167056331 41 TACCCTGTTCCGAGTGATCCGTCTTGCCAGGATTGGCCGAA TACCCTGTTCCGAGTGATCTGTCTTGCCAGGATTGGCCGAA < 41bp 0.503929084106499 0.706557216935466 NA NA prediction 0.405256265657934 Functional Gain - SCN9A ENSG00000169432 CDS Human protein_coding chr2:167056311 chr2:167056312 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_35771 0 0 0 0 1 SCN9A chr2:167056374 3'AG 167056374 Downstream 63bp 32888 chr1 9017302 9017302 1 + C T OV 9017303 + 9017283 9017323 41 GTGCGTCCTCGGAGATCAGCGGCTCTGAGCACACCGTGGAC GTGCGTCCTCGGAGATCAGTGGCTCTGAGCACACCGTGGAC < 41bp 0.541680502177536 0.744306644758558 NA NA prediction 0.405252285162044 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9017303 chr1:9017302 synonymous SNV . 0 20 hm7G_associated_SNPs_35773 0 0 0 0 1 CA6 chr1:9017344 5'GT 9017344 Upstream 43bp 32889 chr8 67066355 67066355 1 + C T CESC 67066356 + 67066336 67066376 41 CCTGCAGCAGCAGAAACTGCGGATCCCTTGTTTTACCCTAG CCTGCAGCAGCAGAAACTGTGGATCCCTTGTTTTACCCTAG < 41bp 0.537482905278833 0.74010882992359 NA NA prediction 0.405251849289513 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67066356 chr8:67066355 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_35774 0 0 0 0 1 TRIM55 chr8:67066282 3'AG 67066282 Downstream 74bp 32890 chr1 206858828 206858828 1 + G T UCEC 206858829 + 206858809 206858849 41 TTGCAGATCTTCAACAAGAGGACCCAGGAGAAATTCGCCCT TTGCAGATCTTCAACAAGATGACCCAGGAGAAATTCGCCCT < 41bp 0.702343904321684 0.904965781663956 NA NA prediction 0.405243754684542 Functional Gain - MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206858829 chr1:206858828 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_35775 0 0 1 0 1 MAPKAPK2 chr1:206858853 5'GT 206858853 Upstream 26bp 32891 chr20 30742988 30742988 1 + C T UCEC 30742989 + 30742969 30743009 41 GGAAAGCACTCATCAGGAGCGGTAAGTGCCTCCCCTACCCT GGAAAGCACTCATCAGGAGTGGTAAGTGCCTCCCCTACCCT < 41bp 0.527782007126955 0.730403603072169 NA NA prediction 0.40524319189043 Functional Gain - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30742989 chr20:30742988 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_35776 0 0 1 0 2 TM9SF4 chr20:30742906 3'AG 30742906 Downstream 83bp 32892 chr20 30742988 30742988 1 + C T UCEC 30742989 + 30742969 30743009 41 GGAAAGCACTCATCAGGAGCGGTAAGTGCCTCCCCTACCCT GGAAAGCACTCATCAGGAGTGGTAAGTGCCTCCCCTACCCT < 41bp 0.527782007126955 0.730403603072169 NA NA prediction 0.40524319189043 Functional Gain - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30742989 chr20:30742988 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_35776 0 0 1 0 2 TM9SF4 chr20:30742989 5'GT 30742989 Upstream 2bp 32893 chr14 103946751 103946751 1 + C T TGCT 103946752 + 103946732 103946772 41 AGCATCTGGTGGAATGACACGACGAAATACTTATGTTTGCA AGCATCTGGTGGAATGACATGACGAAATACTTATGTTTGCA < 41bp 0.516070739153997 0.718691063792868 NA NA prediction 0.405240649277742 Functional Gain - MARK3 ENSG00000075413 CDS Human protein_coding chr14:103946752 chr14:103946751 stopgain 1.000 1 20 hm7G_associated_SNPs_35778 0 0 1 0 1 MARK3 chr14:103946827 5'GT 103946827 Upstream 77bp 32894 chr13 25264765 25264765 1 + G A SKCM 25264766 + 25264746 25264786 41 ATAACTCATCTCTCACGGGGGAGTCTGAGCCCCAGCCCCGC ATAACTCATCTCTCACGGGAGAGTCTGAGCCCCAGCCCCGC < 41bp 0.514470764871871 0.717090112115492 NA NA prediction 0.405238694487242 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264766 chr13:25264765 synonymous SNV . 0 20 hm7G_associated_SNPs_35779 0 0 0 0 2 ATP12A chr13:25264742 3'AG 25264742 Downstream 24bp 32895 chr13 25264765 25264765 1 + G A SKCM 25264766 + 25264746 25264786 41 ATAACTCATCTCTCACGGGGGAGTCTGAGCCCCAGCCCCGC ATAACTCATCTCTCACGGGAGAGTCTGAGCCCCAGCCCCGC < 41bp 0.514470764871871 0.717090112115492 NA NA prediction 0.405238694487242 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25264766 chr13:25264765 synonymous SNV . 0 20 hm7G_associated_SNPs_35779 0 0 0 0 2 ATP12A chr13:25264859 5'GT 25264859 Upstream 95bp 32896 chr6 105406086 105406086 1 + G A SKCM 105406087 + 105406067 105406107 41 AGTGGTTCAATGTGCGCATGGGATTTGGATTCATCTCCATG AGTGGTTCAATGTGCGCATAGGATTTGGATTCATCTCCATG < 41bp 0.508411513144506 0.711030751800441 NA NA prediction 0.405238477311869 Functional Gain - LIN28B ENSG00000187772 CDS Human protein_coding chr6:105406087 chr6:105406086 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35780 0 0 0 0 1 LIN28B chr6:105406161 5'GT 105406161 Upstream 76bp 32897 chr11 119025561 119025561 1 + C T STAD 119025562 + 119025542 119025582 41 CTCTGGCGGGCAGAGGAAGCGTCTGGCCATCGCCCTGGAGC CTCTGGCGGGCAGAGGAAGTGTCTGGCCATCGCCCTGGAGC < 41bp 0.515725260666585 0.718342477454675 NA NA prediction 0.405234433576179 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025562 chr11:119025561 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_35782 0 0 0 0 2 ABCG4 chr11:119025480 3'AG 119025480 Downstream 82bp 32898 chr11 119025561 119025561 1 + C T STAD 119025562 + 119025542 119025582 41 CTCTGGCGGGCAGAGGAAGCGTCTGGCCATCGCCCTGGAGC CTCTGGCGGGCAGAGGAAGTGTCTGGCCATCGCCCTGGAGC < 41bp 0.515725260666585 0.718342477454675 NA NA prediction 0.405234433576179 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025562 chr11:119025561 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_35782 0 0 0 0 2 ABCG4 chr11:119025625 5'GT 119025625 Upstream 65bp 32899 chr2 169417756 169417756 1 + C T UCEC 169417757 + 169417737 169417777 41 GCAACTGGACTGGGATGTTCGAAGCATTCAGCGCTGGTTTC GCAACTGGACTGGGATGTTTGAAGCATTCAGCGCTGGTTTC < 41bp 0.530896504336525 0.733513504956001 NA NA prediction 0.405234001238951 Functional Gain - CERS6 ENSG00000172292 CDS Human protein_coding chr2:169417757 chr2:169417756 stopgain 0.996 1 20 hm7G_associated_SNPs_35783 0 0 1 0 2 CERS6 chr2:169417702 3'AG 169417702 Downstream 55bp 32900 chr2 169417756 169417756 1 + C T UCEC 169417757 + 169417737 169417777 41 GCAACTGGACTGGGATGTTCGAAGCATTCAGCGCTGGTTTC GCAACTGGACTGGGATGTTTGAAGCATTCAGCGCTGGTTTC < 41bp 0.530896504336525 0.733513504956001 NA NA prediction 0.405234001238951 Functional Gain - CERS6 ENSG00000172292 CDS Human protein_coding chr2:169417757 chr2:169417756 stopgain 0.996 1 20 hm7G_associated_SNPs_35783 0 0 1 0 2 CERS6 chr2:169417832 5'GT 169417832 Upstream 77bp 32901 chr19 47884248 47884248 1 + C T UCEC 47884249 + 47884229 47884269 41 CTCACCTACAACTGCCTCACGGTAAGCATGAACCCTCCTTC CTCACCTACAACTGCCTCATGGTAAGCATGAACCCTCCTTC < 41bp 0.498934160156845 0.70261292166745 NA NA prediction 0.405225843334901 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47884249 chr19:47884248 nonsynonymous SNV 0.941 0 20 hm7G_associated_SNPs_35784 0 0 1 0 1 DHX34 chr19:47884249 5'GT 47884249 Upstream 2bp 32902 chr2 44099167 44099167 1 + G A THCA 44099168 + 44099148 44099188 41 AGCAGGAATTGGCCACCAGGGAGAAGGCTCAGTCACTCGCA AGCAGGAATTGGCCACCAGAGAGAAGGCTCAGTCACTCGCA < 41bp 0.499592104327611 0.702612725756827 NA NA prediction 0.405225451513655 Functional Gain - ABCG8 ENSG00000143921 CDS Human protein_coding chr2:44099168 chr2:44099167 synonymous SNV . 0 20 hm7G_associated_SNPs_35786 0 0 0 0 1 ABCG8 chr2:44099115 3'AG 44099115 Downstream 53bp 32903 chr17 7350196 7350196 1 + C T COAD 7350197 + 7350177 7350217 41 GGGACCCTGCGGAGCACGACGGCATCGATTCGCTCCGCATC GGGACCCTGCGGAGCACGATGGCATCGATTCGCTCCGCATC < 41bp 0.529095667616521 0.731707905193556 NA NA prediction 0.405224475154071 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350197 chr17:7350196 synonymous SNV . 0 20 hm7G_associated_SNPs_35789 0 0 1 0 2 CHRNB1 chr17:7350152 3'AG 7350152 Downstream 45bp 32904 chr17 7350196 7350196 1 + C T COAD 7350197 + 7350177 7350217 41 GGGACCCTGCGGAGCACGACGGCATCGATTCGCTCCGCATC GGGACCCTGCGGAGCACGATGGCATCGATTCGCTCCGCATC < 41bp 0.529095667616521 0.731707905193556 NA NA prediction 0.405224475154071 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350197 chr17:7350196 synonymous SNV . 0 20 hm7G_associated_SNPs_35789 0 0 1 0 2 CHRNB1 chr17:7350261 5'GT 7350261 Upstream 66bp 32905 chr22 23629350 23629350 1 + C T OV 23629351 + 23629331 23629371 41 GGCATCTCCCCACAGAGGGCGAACAAGGGCAGCAAGGCTAC GGCATCTCCCCACAGAGGGTGAACAAGGGCAGCAAGGCTAC < 41bp 0.51433488009816 0.716946265530787 NA NA prediction 0.405222770865255 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23629351 chr22:23629350 nonsynonymous SNV 0.863 1 20 hm7G_associated_SNPs_35791 0 0 1 0 1 BCR chr22:23629346 3'AG 23629346 Downstream 5bp 32906 chr4 158073916 158073916 1 + C T LUAD 158073917 + 158073897 158073937 41 CTGAGTGCACAACCCTTGCCGCTGAGCTTCCCAAAGTTTCC CTGAGTGCACAACCCTTGCTGCTGAGCTTCCCAAAGTTTCC < 41bp 0.520402149250364 0.723013217756655 NA NA prediction 0.40522213701258 Functional Gain - GLRB ENSG00000109738 CDS Human protein_coding chr4:158073917 chr4:158073916 synonymous SNV . 0 20 hm7G_associated_SNPs_35793 0 0 0 0 1 GLRB chr4:158073870 3'AG 158073870 Downstream 47bp 32907 chr12 102074214 102074214 1 + C T UCEC 102074215 + 102074195 102074235 41 AGTCTGTACCCTGGAAATTCGCAAGCCCAGCCCCTATGATG AGTCTGTACCCTGGAAATTTGCAAGCCCAGCCCCTATGATG < 41bp 0.50194807488037 0.704558262228303 NA NA prediction 0.405220374695866 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102074215 chr12:102074214 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35794 0 0 0 0 2 MYBPC1 chr12:102074121 3'AG 102074121 Downstream 94bp 32908 chr12 102074214 102074214 1 + C T UCEC 102074215 + 102074195 102074235 41 AGTCTGTACCCTGGAAATTCGCAAGCCCAGCCCCTATGATG AGTCTGTACCCTGGAAATTTGCAAGCCCAGCCCCTATGATG < 41bp 0.50194807488037 0.704558262228303 NA NA prediction 0.405220374695866 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102074215 chr12:102074214 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35794 0 0 0 0 2 MYBPC1 chr12:102074307 5'GT 102074307 Upstream 94bp 32909 chr14 104624226 104624226 1 + G A STAD 104624227 + 104624207 104624247 41 CCCTGGTCACCCCCACCCCGGGCTCGGTGGGGGGCTCCACA CCCTGGTCACCCCCACCCCAGGCTCGGTGGGGGGCTCCACA < 41bp 0.46029219965513 0.702606769383013 NA NA prediction 0.405213538766025 Functional Gain - KIF26A ENSG00000066735 CDS Human protein_coding chr14:104624227 chr14:104624226 synonymous SNV . 0 20 hm7G_associated_SNPs_35797 0 0 0 0 1 KIF26A chr14:104624279 5'GT 104624279 Upstream 54bp 32910 chr3 155654231 155654231 1 + C T UCEC 155654232 + 155654212 155654252 41 CCAGAGATCTGTGGTTATTCGAACCTTTATTACTAGTGACT CCAGAGATCTGTGGTTATTTGAACCTTTATTACTAGTGACT < 41bp 0.537098810421557 0.739705044397162 NA NA prediction 0.40521246795121 Functional Gain - GMPS ENSG00000163655 CDS Human protein_coding chr3:155654232 chr3:155654231 stopgain 1.000 1 20 hm7G_associated_SNPs_35798 0 0 1 0 1 GMPS chr3:155654299 5'GT 155654299 Upstream 69bp 32911 chr13 25881957 25881957 1 + G T LUAD 25881958 + 25881938 25881978 41 AATAAGCAACCCTTCTGTGGGGCTCAATTTTGGAAATCTTG AATAAGCAACCCTTCTGTGTGGCTCAATTTTGGAAATCTTG < 41bp 0.373119068699668 0.702605338356456 NA NA prediction 0.405210676712913 Functional Gain - NUP58 ENSG00000139496 CDS Human protein_coding chr13:25881958 chr13:25881957 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35800 0 0 1 0 1 NUP58 chr13:25881944 3'AG 25881944 Downstream 14bp 32912 chr6 36449446 36449446 1 + C T COAD 36449447 + 36449427 36449467 41 CTGTGCCAAGAAAGGAGAACGAGAGTGCCACATTGTTGTGC CTGTGCCAAGAAAGGAGAATGAGAGTGCCACATTGTTGTGC < 41bp 0.492257521699864 0.702604439006616 NA NA prediction 0.405208878013233 Functional Gain - KCTD20 ENSG00000112078 CDS Human protein_coding chr6:36449447 chr6:36449446 stopgain 1.000 1 20 hm7G_associated_SNPs_35801 0 0 1 0 1 KCTD20 chr6:36449536 5'GT 36449536 Upstream 91bp 32913 chr3 52831850 52831850 1 + C T UCEC 52831851 + 52831831 52831871 41 AGATCGAGGTAGACATCTTCGAGCCTCAGGGAATCAGCATG AGATCGAGGTAGACATCTTTGAGCCTCAGGGAATCAGCATG < 41bp 0.522138766985007 0.724742960857375 NA NA prediction 0.405208387744737 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52831851 chr3:52831850 synonymous SNV . 0 20 hm7G_associated_SNPs_35802 0 0 1 0 2 ITIH3 chr3:52831833 3'AG 52831833 Downstream 18bp 32914 chr3 52831850 52831850 1 + C T UCEC 52831851 + 52831831 52831871 41 AGATCGAGGTAGACATCTTCGAGCCTCAGGGAATCAGCATG AGATCGAGGTAGACATCTTTGAGCCTCAGGGAATCAGCATG < 41bp 0.522138766985007 0.724742960857375 NA NA prediction 0.405208387744737 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52831851 chr3:52831850 synonymous SNV . 0 20 hm7G_associated_SNPs_35802 0 0 1 0 2 ITIH3 chr3:52831946 5'GT 52831946 Upstream 97bp 32915 chr18 29044310 29044310 1 + C T UCEC 29044311 + 29044291 29044331 41 TGGGAACATATCAAGCCATCGATGAGGACACTAACAAAGCT TGGGAACATATCAAGCCATTGATGAGGACACTAACAAAGCT < 41bp 0.497165318128283 0.702604050021778 NA NA prediction 0.405208100043556 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29044311 chr18:29044310 synonymous SNV . 0 20 hm7G_associated_SNPs_35803 0 0 0 0 1 DSG3 chr18:29044345 5'GT 29044345 Upstream 36bp 32916 chr6 43097505 43097505 1 + G A UCEC 43097506 + 43097486 43097526 41 TCCTGAAGCATCCAGCCTCGGAAGCTGAGATCCAGCCACAG TCCTGAAGCATCCAGCCTCAGAAGCTGAGATCCAGCCACAG < 41bp 0.531019493736267 0.733623079535808 NA NA prediction 0.405207171599082 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43097506 chr6:43097505 synonymous SNV . 0 20 hm7G_associated_SNPs_35804 0 0 1 1 2 PTK7 chr6:43097465 3'AG 43097465 Downstream 41bp 32917 chr6 43097505 43097505 1 + G A UCEC 43097506 + 43097486 43097526 41 TCCTGAAGCATCCAGCCTCGGAAGCTGAGATCCAGCCACAG TCCTGAAGCATCCAGCCTCAGAAGCTGAGATCCAGCCACAG < 41bp 0.531019493736267 0.733623079535808 NA NA prediction 0.405207171599082 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43097506 chr6:43097505 synonymous SNV . 0 20 hm7G_associated_SNPs_35804 0 0 1 1 2 PTK7 chr6:43097567 5'GT 43097567 Upstream 63bp 32918 chr7 128845484 128845484 1 + C T SKCM 128845485 + 128845465 128845505 41 TGACTGGCGGAACTCGAATCGCTACCCTGCTGTTATTCTCT TGACTGGCGGAACTCGAATTGCTACCCTGCTGTTATTCTCT < 41bp 0.540466084768081 0.743067747496667 NA NA prediction 0.405203325457172 Functional Gain - SMO ENSG00000128602 CDS Human protein_coding chr7:128845485 chr7:128845484 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_35805 0 0 1 0 1 SMO chr7:128845451 3'AG 128845451 Downstream 34bp 32919 chr10 69966659 69966659 1 + C T rs142307556 69966660 + 69966640 69966680 41 CTGCCAGGCTGGATATATACGGTAAGTGTAATGCTGTTAGT CTGCCAGGCTGGATATATATGGTAAGTGTAATGCTGTTAGT < 41bp 0.498250148411061 0.702599559502688 NA NA prediction 0.405199119005377 Functional Gain - MYPN ENSG00000138347 CDS Human protein_coding chr10:69966660 chr10:69966659 synonymous SNV . 0 20 hm7G_associated_SNPs_35808 0 0 0 0 1 MYPN chr10:69966660 5'GT 69966660 Upstream 2bp 32920 chr14 45578918 45578918 1 + C T UCEC 45578919 + 45578899 45578939 41 TGAAAATGGGACTCATGAACGAGTTGTGGTTCTCTTTGAAA TGAAAATGGGACTCATGAATGAGTTGTGGTTCTCTTTGAAA < 41bp 0.506709344937094 0.709308467829994 NA NA prediction 0.405198245785799 Functional Gain - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45578919 chr14:45578918 stopgain 0.999 1 20 hm7G_associated_SNPs_35809 0 0 1 0 2 PRPF39 chr14:45578819 3'AG 45578819 Downstream 100bp 32921 chr14 45578918 45578918 1 + C T UCEC 45578919 + 45578899 45578939 41 TGAAAATGGGACTCATGAACGAGTTGTGGTTCTCTTTGAAA TGAAAATGGGACTCATGAATGAGTTGTGGTTCTCTTTGAAA < 41bp 0.506709344937094 0.709308467829994 NA NA prediction 0.405198245785799 Functional Gain - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45578919 chr14:45578918 stopgain 0.999 1 20 hm7G_associated_SNPs_35809 0 0 1 0 2 PRPF39 chr14:45578983 5'GT 45578983 Upstream 66bp 32922 chr8 92352692 92352692 1 + C T COAD 92352693 + 92352673 92352713 41 CGGTGATCACTGAAGCTTTCGGAGTGGCACTTGTAGGCTAT CGGTGATCACTGAAGCTTTTGGAGTGGCACTTGTAGGCTAT < 41bp 0.553956787021451 0.756555336771616 NA NA prediction 0.405197099500331 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92352693 chr8:92352692 synonymous SNV . 0 20 hm7G_associated_SNPs_35811 0 0 0 0 2 SLC26A7 chr8:92352632 3'AG 92352632 Downstream 61bp 32923 chr8 92352692 92352692 1 + C T COAD 92352693 + 92352673 92352713 41 CGGTGATCACTGAAGCTTTCGGAGTGGCACTTGTAGGCTAT CGGTGATCACTGAAGCTTTTGGAGTGGCACTTGTAGGCTAT < 41bp 0.553956787021451 0.756555336771616 NA NA prediction 0.405197099500331 Functional Gain - SLC26A7 ENSG00000147606 CDS Human protein_coding chr8:92352693 chr8:92352692 synonymous SNV . 0 20 hm7G_associated_SNPs_35811 0 0 0 0 2 SLC26A7 chr8:92352779 5'GT 92352779 Upstream 88bp 32924 chr20 2290351 2290351 1 + C T STAD 2290352 + 2290332 2290372 41 ACGGCCTTCAACCGACAAGCGCATCACACAGACAAGTTCTC ACGGCCTTCAACCGACAAGTGCATCACACAGACAAGTTCTC < 41bp 0.529747970963767 0.732345637170361 NA NA prediction 0.405195332413188 Functional Gain - TGM3 ENSG00000125780 CDS Human protein_coding chr20:2290352 chr20:2290351 nonsynonymous SNV 0.267 2 20 hm7G_associated_SNPs_35812 0 0 0 0 1 TGM3 chr20:2290303 3'AG 2290303 Downstream 49bp 32925 chr6 36651890 36651890 1 + G A rs4986868 36651891 + 36651871 36651911 41 CAGGCGCCATGTCAGAACCGGCTGGGGATGTCCGTCAGAAC CAGGCGCCATGTCAGAACCAGCTGGGGATGTCCGTCAGAAC < 41bp 0.493792733462177 0.702597518452745 NA NA prediction 0.40519503690549 Functional Gain - CDKN1A ENSG00000124762 CDS Human protein_coding chr6:36651891 chr6:36651890 synonymous SNV . 0 20 hm7G_associated_SNPs_35813 0 0 1 0 1 CDKN1A chr6:36651874 3'AG 36651874 Downstream 17bp 32926 chr16 1291668 1291668 1 + G T LUSC 1291669 + 1291649 1291689 41 CCCCCGGGGATGCCGTGCTGGGTCACTGGCTGGGGCGATGT CCCCCGGGGATGCCGTGCTTGGTCACTGGCTGGGGCGATGT < 41bp 0.713192715479673 0.915789568316126 NA NA prediction 0.405193705672906 Functional Gain - TPSAB1 ENSG00000172236 CDS Human protein_coding chr16:1291669 chr16:1291668 nonsynonymous SNV 0.833 4 20 hm7G_associated_SNPs_35814 0 0 0 0 1 TPSAB1 chr16:1291700 5'GT 1291700 Upstream 33bp 32927 chr10 135123765 135123765 1 + G A UCEC 135123766 + 135123746 135123786 41 CTGTACCCCGCGGACTTCCGGTTTGATAAGCCAAAGAAAAG CTGTACCCCGCGGACTTCCAGTTTGATAAGCCAAAGAAAAG < 41bp 0.53241413490602 0.735009934647295 NA NA prediction 0.40519159948255 Functional Gain - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135123766 chr10:135123765 nonsynonymous SNV 0.914 4 20 hm7G_associated_SNPs_35815 0 0 1 1 2 ZNF511 chr10:135123668 3'AG 135123668 Downstream 98bp 32928 chr10 135123765 135123765 1 + G A UCEC 135123766 + 135123746 135123786 41 CTGTACCCCGCGGACTTCCGGTTTGATAAGCCAAAGAAAAG CTGTACCCCGCGGACTTCCAGTTTGATAAGCCAAAGAAAAG < 41bp 0.53241413490602 0.735009934647295 NA NA prediction 0.40519159948255 Functional Gain - ZNF511 ENSG00000198546 CDS Human protein_coding chr10:135123766 chr10:135123765 nonsynonymous SNV 0.914 4 20 hm7G_associated_SNPs_35815 0 0 1 1 2 ZNF511 chr10:135123792 5'GT 135123792 Upstream 28bp 32929 chr11 111965589 111965589 1 + G T STAD 111965590 + 111965570 111965610 41 CCTTGCAGAAAGCTGCCAAGGCAGGGCTTTTGGCACTTTCA CCTTGCAGAAAGCTGCCAATGCAGGGCTTTTGGCACTTTCA < 41bp 0.700217225292322 0.902811458908028 NA NA prediction 0.405188467231413 Functional Gain - SDHD ENSG00000204370 CDS Human protein_coding chr11:111965590 chr11:111965589 nonsynonymous SNV 0.994 1 20 hm7G_associated_SNPs_35816 4 0 1 0 1 SDHD chr11:111965529 3'AG 111965529 Downstream 61bp 32930 chr21 47848342 47848342 1 + C T rs146486696 47848343 + 47848323 47848363 41 AAAGTCCCTGGAGCATCTTCGCTTGCCGGACCGGAGCAGCC AAAGTCCCTGGAGCATCTTTGCTTGCCGGACCGGAGCAGCC < 41bp 0.509648274585422 0.712241512218558 NA NA prediction 0.405186475266273 Functional Gain - PCNT ENSG00000160299 CDS Human protein_coding chr21:47848343 chr21:47848342 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_35817 0 0 1 0 1 PCNT chr21:47848309 3'AG 47848309 Downstream 34bp 32931 chr16 28846877 28846877 1 + C T STAD 28846878 + 28846858 28846898 41 CCTCCCCAGCAGCATCAGGCGGGGCAGGCCCCACACTTGGG CCTCCCCAGCAGCATCAGGTGGGGCAGGCCCCACACTTGGG < 41bp 0.527276189305569 0.729868822847684 NA NA prediction 0.40518526708423 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28846878 chr16:28846877 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_35819 0 0 1 0 2 ATXN2L chr16:28846867 3'AG 28846867 Downstream 11bp 32932 chr16 28846877 28846877 1 + C T STAD 28846878 + 28846858 28846898 41 CCTCCCCAGCAGCATCAGGCGGGGCAGGCCCCACACTTGGG CCTCCCCAGCAGCATCAGGTGGGGCAGGCCCCACACTTGGG < 41bp 0.527276189305569 0.729868822847684 NA NA prediction 0.40518526708423 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28846878 chr16:28846877 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_35819 0 0 1 0 2 ATXN2L chr16:28846870 3'AG 28846870 Downstream 8bp 32933 chr22 40798178 40798178 1 + C T LUSC 40798179 + 40798159 40798199 41 AGCAACCAGAGTTCTACTACGATGAGTTTGGTTTCCGTGTG AGCAACCAGAGTTCTACTATGATGAGTTTGGTTTCCGTGTG < 41bp 0.532065627898446 0.734657353685267 NA NA prediction 0.405183451573643 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40798179 chr22:40798178 synonymous SNV . 0 20 hm7G_associated_SNPs_35821 0 0 1 0 2 SGSM3 chr22:40798143 3'AG 40798143 Downstream 36bp 32934 chr22 40798178 40798178 1 + C T LUSC 40798179 + 40798159 40798199 41 AGCAACCAGAGTTCTACTACGATGAGTTTGGTTTCCGTGTG AGCAACCAGAGTTCTACTATGATGAGTTTGGTTTCCGTGTG < 41bp 0.532065627898446 0.734657353685267 NA NA prediction 0.405183451573643 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40798179 chr22:40798178 synonymous SNV . 0 20 hm7G_associated_SNPs_35821 0 0 1 0 2 SGSM3 chr22:40798209 5'GT 40798209 Upstream 32bp 32935 chr17 9489256 9489256 1 + C T SKCM 9489257 + 9489237 9489277 41 CCAGGTCTGGAGAGTACATCGCCTCCGGACAAGTCACATTC CCAGGTCTGGAGAGTACATTGCCTCCGGACAAGTCACATTC < 41bp 0.539642260284877 0.74223346969494 NA NA prediction 0.405182418820125 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9489257 chr17:9489256 synonymous SNV . 0 20 hm7G_associated_SNPs_35822 0 0 0 0 1 CFAP52 chr17:9489289 5'GT 9489289 Upstream 34bp 32936 chr12 102301996 102301996 1 + C T STAD 102301997 + 102301977 102302017 41 CAGTGGTTCATGACGGGGGCGCTCTTTTGGCCTTTGTCTGT CAGTGGTTCATGACGGGGGTGCTCTTTTGGCCTTTGTCTGT < 41bp 0.553854566812751 0.756445526010225 NA NA prediction 0.405181918394948 Functional Gain - DRAM1 ENSG00000136048 CDS Human protein_coding chr12:102301997 chr12:102301996 synonymous SNV . 0 20 hm7G_associated_SNPs_35823 0 0 1 0 1 DRAM1 chr12:102301964 3'AG 102301964 Downstream 33bp 32937 chr17 78092063 78092063 1 + G A rs1042397 78092064 + 78092044 78092084 41 TGGCCCTGACCAAGGGTGGGGAGGCCCGAGGGGAGCTGTTC TGGCCCTGACCAAGGGTGGAGAGGCCCGAGGGGAGCTGTTC < 41bp 0.546597650847767 0.749187787925719 NA NA prediction 0.405180274155904 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78092064 chr17:78092063 synonymous SNV . 0 20 hm7G_associated_SNPs_35824 2 0 1 0 2 GAA chr17:78091992 3'AG 78091992 Downstream 72bp 32938 chr17 78092063 78092063 1 + G A rs1042397 78092064 + 78092044 78092084 41 TGGCCCTGACCAAGGGTGGGGAGGCCCGAGGGGAGCTGTTC TGGCCCTGACCAAGGGTGGAGAGGCCCGAGGGGAGCTGTTC < 41bp 0.546597650847767 0.749187787925719 NA NA prediction 0.405180274155904 Functional Gain - GAA ENSG00000171298 CDS Human protein_coding chr17:78092064 chr17:78092063 synonymous SNV . 0 20 hm7G_associated_SNPs_35824 2 0 1 0 2 GAA chr17:78092156 5'GT 78092156 Upstream 94bp 32939 chr2 27317693 27317693 1 + C T UCEC 27317694 + 27317674 27317714 41 GGTGGCCGACTTCAGGCGGCGGGGCGTGGACGTGTCTCAGG GGTGGCCGACTTCAGGCGGTGGGGCGTGGACGTGTCTCAGG < 41bp 0.503047025515687 0.705637001501512 NA NA prediction 0.405179951971651 Functional Gain - KHK ENSG00000138030 CDS Human protein_coding chr2:27317694 chr2:27317693 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_35825 0 0 0 0 1 KHK chr2:27317668 3'AG 27317668 Downstream 26bp 32940 chr12 54968997 54968997 1 + C T SKCM 54968998 + 54968978 54969018 41 CCTCATGGAGGAATTCTTCCGTCAGGTAGCGTGGCATCTTT CCTCATGGAGGAATTCTTCTGTCAGGTAGCGTGGCATCTTT < 41bp 0.503283310647836 0.705872960933658 NA NA prediction 0.405179300571645 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54968998 chr12:54968997 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_35827 0 0 0 0 1 PDE1B chr12:54969002 5'GT 54969002 Upstream 6bp 32941 chr1 10179613 10179613 1 + C T STAD 10179614 + 10179594 10179634 41 CCAGCTTCTGAGCAACATCCGCTCACAGTGCATATCCCATA CCAGCTTCTGAGCAACATCTGCTCACAGTGCATATCCCATA < 41bp 0.557827866293562 0.760416881505993 NA NA prediction 0.405178030424862 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10179614 chr1:10179613 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35829 0 0 1 0 2 UBE4B chr1:10179571 3'AG 10179571 Downstream 43bp 32942 chr1 10179613 10179613 1 + C T STAD 10179614 + 10179594 10179634 41 CCAGCTTCTGAGCAACATCCGCTCACAGTGCATATCCCATA CCAGCTTCTGAGCAACATCTGCTCACAGTGCATATCCCATA < 41bp 0.557827866293562 0.760416881505993 NA NA prediction 0.405178030424862 Functional Gain - UBE4B ENSG00000130939 CDS Human protein_coding chr1:10179614 chr1:10179613 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_35829 0 0 1 0 2 UBE4B chr1:10179671 5'GT 10179671 Upstream 59bp 32943 chr15 80743280 80743280 1 + G A STAD 80743281 + 80743261 80743301 41 TGCCCCCATGGCGGCCACCGGACAGGTGAGGATGGCGGGGG TGCCCCCATGGCGGCCACCAGACAGGTGAGGATGGCGGGGG < 41bp 0.533267790229897 0.735856801164617 NA NA prediction 0.405178021869441 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80743281 chr15:80743280 nonsynonymous SNV 0.954 3 20 hm7G_associated_SNPs_35830 0 0 1 0 2 ARNT2 chr15:80743221 3'AG 80743221 Downstream 60bp 32944 chr15 80743280 80743280 1 + G A STAD 80743281 + 80743261 80743301 41 TGCCCCCATGGCGGCCACCGGACAGGTGAGGATGGCGGGGG TGCCCCCATGGCGGCCACCAGACAGGTGAGGATGGCGGGGG < 41bp 0.533267790229897 0.735856801164617 NA NA prediction 0.405178021869441 Functional Gain - ARNT2 ENSG00000172379 CDS Human protein_coding chr15:80743281 chr15:80743280 nonsynonymous SNV 0.954 3 20 hm7G_associated_SNPs_35830 0 0 1 0 2 ARNT2 chr15:80743335 5'GT 80743335 Upstream 56bp 32945 chr8 134237791 134237791 1 + C T UCEC 134237792 + 134237772 134237812 41 GAGCCGCCTCTGCAACTTGCGGCCATGCGATGTGGACATCC GAGCCGCCTCTGCAACTTGTGGCCATGCGATGTGGACATCC < 41bp 0.539175261576049 0.741763742468131 NA NA prediction 0.405176961784163 Functional Gain - WISP1 ENSG00000104415 CDS Human protein_coding chr8:134237792 chr8:134237791 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_35831 0 0 0 0 1 WISP1 chr8:134237826 5'GT 134237826 Upstream 36bp 32946 chr1 65145312 65145312 1 + C T COAD 65145313 + 65145293 65145333 41 CATTAAACATGATTAAAAGCGCCCCTGTGGGTCCTGTGGCT CATTAAACATGATTAAAAGTGCCCCTGTGGGTCCTGTGGCT < 41bp 0.536978739381947 0.739563020350879 NA NA prediction 0.405168561937863 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65145313 chr1:65145312 synonymous SNV . 0 20 hm7G_associated_SNPs_35833 0 0 1 0 1 CACHD1 chr1:65145278 3'AG 65145278 Downstream 35bp 32947 chr19 38893832 38893832 1 + G A rs201469183 38893833 + 38893813 38893853 41 AAGCGTGGGAGGGGGCCGCGGTGGCCCAGGACCTGCTGGCT AAGCGTGGGAGGGGGCCGCAGTGGCCCAGGACCTGCTGGCT < 41bp 0.581649974934412 0.784233809722432 NA NA prediction 0.405167669576039 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38893833 chr19:38893832 synonymous SNV . 0 20 hm7G_associated_SNPs_35835 0 0 0 0 1 FAM98C chr19:38893858 5'GT 38893858 Upstream 27bp 32948 chr11 119020852 119020852 1 + G A LUSC 119020853 + 119020833 119020873 41 TACCCAAGCGCTCAGCCGTGGACATCGAGTTCGTGGAGCTG TACCCAAGCGCTCAGCCGTAGACATCGAGTTCGTGGAGCTG < 41bp 0.561596349574869 0.764180184320813 NA NA prediction 0.405167669491888 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119020853 chr11:119020852 synonymous SNV . 0 20 hm7G_associated_SNPs_35836 0 0 0 0 1 ABCG4 chr11:119020913 5'GT 119020913 Upstream 62bp 32949 chr19 7975344 7975344 1 + C T COAD 7975345 + 7975325 7975365 41 CCTGCCTGTGCAGCAAATGCGGCGCTCCGGGAACAAGGAGG CCTGCCTGTGCAGCAAATGTGGCGCTCCGGGAACAAGGAGG < 41bp 0.545717772479544 0.748300528442109 NA NA prediction 0.405165511925131 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975345 chr19:7975344 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35837 0 0 1 0 1 MAP2K7 chr19:7975338 3'AG 7975338 Downstream 7bp 32950 chr15 51260544 51260544 1 + C T STAD 51260545 + 51260525 51260565 41 TTACAAACCTCCCCATCAACGCCAGGAGGAAAAGCTTTCTC TTACAAACCTCCCCATCAATGCCAGGAGGAAAAGCTTTCTC < 41bp 0.515987177751019 0.718569693868778 NA NA prediction 0.405165032235518 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51260545 chr15:51260544 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35839 0 0 1 0 2 AP4E1 chr15:51260460 3'AG 51260460 Downstream 85bp 32951 chr15 51260544 51260544 1 + C T STAD 51260545 + 51260525 51260565 41 TTACAAACCTCCCCATCAACGCCAGGAGGAAAAGCTTTCTC TTACAAACCTCCCCATCAATGCCAGGAGGAAAAGCTTTCTC < 41bp 0.515987177751019 0.718569693868778 NA NA prediction 0.405165032235518 Functional Gain - AP4E1 ENSG00000081014 CDS Human protein_coding chr15:51260545 chr15:51260544 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35839 0 0 1 0 2 AP4E1 chr15:51260574 5'GT 51260574 Upstream 31bp 32952 chr20 20177279 20177279 1 + C T UVM 20177280 + 20177260 20177300 41 ACTTCAGTCACCACCAGCGCGAAGAACACGGGCACATGCAT ACTTCAGTCACCACCAGCGTGAAGAACACGGGCACATGCAT < 41bp 0.546661389971364 0.749242725783746 NA NA prediction 0.405162671624764 Functional Gain - CFAP61 ENSG00000089101 CDS Human protein_coding chr20:20177280 chr20:20177279 synonymous SNV . 0 20 hm7G_associated_SNPs_35840 0 0 0 0 1 CFAP61 chr20:20177214 3'AG 20177214 Downstream 66bp 32953 chr9 140685305 140685305 1 + C T UCEC 140685306 + 140685286 140685326 41 TGTTGTTTCACTAGGCGGGCGCTAATATTGACACCTGCTCA TGTTGTTTCACTAGGCGGGTGCTAATATTGACACCTGCTCA < 41bp 0.539513999528097 0.74209438237767 NA NA prediction 0.405160765699146 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140685306 chr9:140685305 synonymous SNV . 0 20 hm7G_associated_SNPs_35841 0 0 1 0 1 EHMT1 chr9:140685300 3'AG 140685300 Downstream 6bp 32954 chr5 38409153 38409153 1 + C T LIHC 38409154 + 38409134 38409174 41 ACTGTGGGGAGAACGAACACGGGAGGGGGGATTTCATGTCC ACTGTGGGGAGAACGAACATGGGAGGGGGGATTTCATGTCC < 41bp 0.537999789626426 0.740579513811211 NA NA prediction 0.405159448369571 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38409154 chr5:38409153 synonymous SNV . 0 20 hm7G_associated_SNPs_35843 0 0 0 0 2 EGFLAM chr5:38409106 3'AG 38409106 Downstream 48bp 32955 chr5 38409153 38409153 1 + C T LIHC 38409154 + 38409134 38409174 41 ACTGTGGGGAGAACGAACACGGGAGGGGGGATTTCATGTCC ACTGTGGGGAGAACGAACATGGGAGGGGGGATTTCATGTCC < 41bp 0.537999789626426 0.740579513811211 NA NA prediction 0.405159448369571 Functional Gain - EGFLAM ENSG00000164318 CDS Human protein_coding chr5:38409154 chr5:38409153 synonymous SNV . 0 20 hm7G_associated_SNPs_35843 0 0 0 0 2 EGFLAM chr5:38409206 5'GT 38409206 Upstream 54bp 32956 chr14 95056549 95056549 1 + C T LUAD 95056550 + 95056530 95056570 41 CCCTACCAAGGCAATGCCACGGCTTTGTTCATTCTCCCCAG CCCTACCAAGGCAATGCCATGGCTTTGTTCATTCTCCCCAG < 41bp 0.532810277710676 0.735389073735614 NA NA prediction 0.405157592049876 Functional Gain - SERPINA5 ENSG00000188488 CDS Human protein_coding chr14:95056550 chr14:95056549 nonsynonymous SNV 0.206 3 20 hm7G_associated_SNPs_35844 0 0 1 0 1 SERPINA5 chr14:95056648 5'GT 95056648 Upstream 100bp 32957 chr16 89757938 89757938 1 + G A COAD 89757939 + 89757919 89757959 41 CTGAAGGAGGTGGTTGTGGGGAACCACCTGGAGAGGTACGT CTGAAGGAGGTGGTTGTGGAGAACCACCTGGAGAGGTACGT < 41bp 0.526733320660675 0.72930975645132 NA NA prediction 0.40515287158129 Functional Gain - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89757939 chr16:89757938 nonsynonymous SNV 0.940 4 20 hm7G_associated_SNPs_35845 0 0 1 0 2 CDK10 chr16:89757851 3'AG 89757851 Downstream 88bp 32958 chr16 89757938 89757938 1 + G A COAD 89757939 + 89757919 89757959 41 CTGAAGGAGGTGGTTGTGGGGAACCACCTGGAGAGGTACGT CTGAAGGAGGTGGTTGTGGAGAACCACCTGGAGAGGTACGT < 41bp 0.526733320660675 0.72930975645132 NA NA prediction 0.40515287158129 Functional Gain - CDK10 ENSG00000185324 CDS Human protein_coding chr16:89757939 chr16:89757938 nonsynonymous SNV 0.940 4 20 hm7G_associated_SNPs_35845 0 0 1 0 2 CDK10 chr16:89757953 5'GT 89757953 Upstream 16bp 32959 chr16 88599055 88599055 1 + C T LUSC 88599056 + 88599036 88599076 41 GTGTGCCTGATCTGCCTGTCGGCCTTCACCACCAAGGCCAA GTGTGCCTGATCTGCCTGTTGGCCTTCACCACCAAGGCCAA < 41bp 0.501032026484099 0.70360830375965 NA NA prediction 0.405152554551102 Functional Gain - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88599056 chr16:88599055 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_35846 0 0 1 0 2 ZFPM1 chr16:88599022 3'AG 88599022 Downstream 34bp 32960 chr16 88599055 88599055 1 + C T LUSC 88599056 + 88599036 88599076 41 GTGTGCCTGATCTGCCTGTCGGCCTTCACCACCAAGGCCAA GTGTGCCTGATCTGCCTGTTGGCCTTCACCACCAAGGCCAA < 41bp 0.501032026484099 0.70360830375965 NA NA prediction 0.405152554551102 Functional Gain - ZFPM1 ENSG00000179588 CDS Human protein_coding chr16:88599056 chr16:88599055 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_35846 0 0 1 0 2 ZFPM1 chr16:88599117 5'GT 88599117 Upstream 63bp 32961 chr9 140108829 140108829 1 + G A UCEC 140108830 + 140108810 140108850 41 TCCCACTTCCAGGACGTTCGGCTGATTGAGTTTGACATCTT TCCCACTTCCAGGACGTTCAGCTGATTGAGTTTGACATCTT < 41bp 0.553812015373637 0.756385859593908 NA NA prediction 0.405147688440543 Functional Gain - NDOR1 ENSG00000188566 CDS Human protein_coding chr9:140108830 chr9:140108829 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35851 0 0 1 0 1 NDOR1 chr9:140108865 5'GT 140108865 Upstream 37bp 32962 chr17 80544993 80544993 1 + G A rs73999998 80544994 + 80544974 80545014 41 ACGCTCGGCACTGCCAGCCGGATCATTCAGACGGCACAGAC ACGCTCGGCACTGCCAGCCAGATCATTCAGACGGCACAGAC < 41bp 0.509035153685245 0.711608906570107 NA NA prediction 0.405147505769724 Functional Gain - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80544994 chr17:80544993 nonsynonymous SNV 0.344 5 20 hm7G_associated_SNPs_35852 0 0 1 0 1 FOXK2 chr17:80544939 3'AG 80544939 Downstream 55bp 32963 chr6 36989314 36989314 1 + C T HNSC 36989315 + 36989295 36989335 41 AAGCAGCCATTGACCAAATCGAGAAGCGGAATGAAACCTTC AAGCAGCCATTGACCAAATTGAGAAGCGGAATGAAACCTTC < 41bp 0.536828098910973 0.739401846474209 NA NA prediction 0.405147495126473 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36989315 chr6:36989314 synonymous SNV . 0 20 hm7G_associated_SNPs_35853 0 0 0 0 2 FGD2 chr6:36989288 3'AG 36989288 Downstream 27bp 32964 chr6 36989314 36989314 1 + C T HNSC 36989315 + 36989295 36989335 41 AAGCAGCCATTGACCAAATCGAGAAGCGGAATGAAACCTTC AAGCAGCCATTGACCAAATTGAGAAGCGGAATGAAACCTTC < 41bp 0.536828098910973 0.739401846474209 NA NA prediction 0.405147495126473 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36989315 chr6:36989314 synonymous SNV . 0 20 hm7G_associated_SNPs_35853 0 0 0 0 2 FGD2 chr6:36989380 5'GT 36989380 Upstream 67bp 32965 chr11 64977539 64977539 1 + C T rs17887152 64977540 + 64977520 64977560 41 CGGGCAGCATGAGTGCCTACGAGATGCGGATGGCCATTGAG CGGGCAGCATGAGTGCCTATGAGATGCGGATGGCCATTGAG < 41bp 0.490154693319497 0.702572892583917 NA NA prediction 0.405145785167833 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64977540 chr11:64977539 synonymous SNV . 0 20 hm7G_associated_SNPs_35854 0 0 1 0 2 CAPN1 chr11:64977489 3'AG 64977489 Downstream 51bp 32966 chr11 64977539 64977539 1 + C T rs17887152 64977540 + 64977520 64977560 41 CGGGCAGCATGAGTGCCTACGAGATGCGGATGGCCATTGAG CGGGCAGCATGAGTGCCTATGAGATGCGGATGGCCATTGAG < 41bp 0.490154693319497 0.702572892583917 NA NA prediction 0.405145785167833 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64977540 chr11:64977539 synonymous SNV . 0 20 hm7G_associated_SNPs_35854 0 0 1 0 2 CAPN1 chr11:64977567 5'GT 64977567 Upstream 29bp 32967 chr20 2842490 2842490 1 + C T GBM 2842491 + 2842471 2842511 41 CCTACCTGGTGCCTGAGCTCGATGGGGTCCGCATCTTCTCC CCTACCTGGTGCCTGAGCTTGATGGGGTCCGCATCTTCTCC < 41bp 0.544096210984288 0.746669008020973 NA NA prediction 0.40514559407337 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2842491 chr20:2842490 synonymous SNV . 0 20 hm7G_associated_SNPs_35855 0 0 0 0 2 VPS16 chr20:2842451 3'AG 2842451 Downstream 40bp 32968 chr20 2842490 2842490 1 + C T GBM 2842491 + 2842471 2842511 41 CCTACCTGGTGCCTGAGCTCGATGGGGTCCGCATCTTCTCC CCTACCTGGTGCCTGAGCTTGATGGGGTCCGCATCTTCTCC < 41bp 0.544096210984288 0.746669008020973 NA NA prediction 0.40514559407337 Functional Gain - VPS16 ENSG00000215305 CDS Human protein_coding chr20:2842491 chr20:2842490 synonymous SNV . 0 20 hm7G_associated_SNPs_35855 0 0 0 0 2 VPS16 chr20:2842545 5'GT 2842545 Upstream 56bp 32969 chr13 111938574 111938574 1 + C T rs137910941 111938575 + 111938555 111938595 41 AGCCTTCAGATGAGGAGTTCGCGTCCCGGAAAAGTGAGTAC AGCCTTCAGATGAGGAGTTTGCGTCCCGGAAAAGTGAGTAC < 41bp 0.492669361486849 0.702572779964182 NA NA prediction 0.405145559928364 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111938575 chr13:111938574 synonymous SNV . 0 20 hm7G_associated_SNPs_35856 0 0 1 0 2 ARHGEF7 chr13:111938494 3'AG 111938494 Downstream 81bp 32970 chr13 111938574 111938574 1 + C T rs137910941 111938575 + 111938555 111938595 41 AGCCTTCAGATGAGGAGTTCGCGTCCCGGAAAAGTGAGTAC AGCCTTCAGATGAGGAGTTTGCGTCCCGGAAAAGTGAGTAC < 41bp 0.492669361486849 0.702572779964182 NA NA prediction 0.405145559928364 Functional Gain - ARHGEF7 ENSG00000102606 CDS Human protein_coding chr13:111938575 chr13:111938574 synonymous SNV . 0 20 hm7G_associated_SNPs_35856 0 0 1 0 2 ARHGEF7 chr13:111938587 5'GT 111938587 Upstream 14bp 32971 chr8 17407881 17407881 1 + C T UCEC 17407882 + 17407862 17407902 41 CCTTATGGCTTTACGGGAACGTTGGCTGGTGCTGCAACTTG CCTTATGGCTTTACGGGAATGTTGGCTGGTGCTGCAACTTG < 41bp 0.527949956038402 0.730520123716747 NA NA prediction 0.405140335356689 Functional Gain - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17407882 chr8:17407881 nonsynonymous SNV 0.420 1 20 hm7G_associated_SNPs_35858 0 0 1 0 2 SLC7A2 chr8:17407810 3'AG 17407810 Downstream 72bp 32972 chr8 17407881 17407881 1 + C T UCEC 17407882 + 17407862 17407902 41 CCTTATGGCTTTACGGGAACGTTGGCTGGTGCTGCAACTTG CCTTATGGCTTTACGGGAATGTTGGCTGGTGCTGCAACTTG < 41bp 0.527949956038402 0.730520123716747 NA NA prediction 0.405140335356689 Functional Gain - SLC7A2 ENSG00000003989 CDS Human protein_coding chr8:17407882 chr8:17407881 nonsynonymous SNV 0.420 1 20 hm7G_associated_SNPs_35858 0 0 1 0 2 SLC7A2 chr8:17407943 5'GT 17407943 Upstream 63bp 32973 chrX 67941448 67941448 1 + G T UCEC 67941449 + 67941429 67941469 41 TCCCCGATGAGAACCGAGAGGTGCTACAGACCCTGCTCTAC TCCCCGATGAGAACCGAGATGTGCTACAGACCCTGCTCTAC < 41bp 0.354681267432808 0.702565260965907 NA NA prediction 0.405130521931815 Functional Gain - STARD8 ENSG00000130052 CDS Human protein_coding chrX:67941449 chrX:67941448 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_35859 0 0 1 0 1 STARD8 chrX:67941378 3'AG 67941378 Downstream 71bp 32974 chr2 48898788 48898788 1 + C T LUAD 48898789 + 48898769 48898809 41 GTGCCAGACCTGTTTGACACGGATAATGTTATTGTCTGTCA GTGCCAGACCTGTTTGACATGGATAATGTTATTGTCTGTCA < 41bp 0.512964063409034 0.715525446954146 NA NA prediction 0.405122767090223 Functional Gain - GTF2A1L;STON1-GTF2A1L ENSG00000068781;ENSG00000242441 CDS Human other chr2:48898789 chr2:48898788 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_35862 0 0 0 0 2 GTF2A1L;STON1-GTF2A1L chr2:48898730 3'AG 48898730 Downstream 59bp 32975 chr2 48898788 48898788 1 + C T LUAD 48898789 + 48898769 48898809 41 GTGCCAGACCTGTTTGACACGGATAATGTTATTGTCTGTCA GTGCCAGACCTGTTTGACATGGATAATGTTATTGTCTGTCA < 41bp 0.512964063409034 0.715525446954146 NA NA prediction 0.405122767090223 Functional Gain - GTF2A1L;STON1-GTF2A1L ENSG00000068781;ENSG00000242441 CDS Human other chr2:48898789 chr2:48898788 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_35862 0 0 0 0 2 GTF2A1L;STON1-GTF2A1L chr2:48898819 5'GT 48898819 Upstream 32bp 32976 chr16 29856191 29856191 1 + C T CESC 29856192 + 29856172 29856212 41 ACCACCAACTCCCAGGAAGCGGCGGCCAAGTAAGTGAGGCT ACCACCAACTCCCAGGAAGTGGCGGCCAAGTAAGTGAGGCT < 41bp 0.519077493017148 0.721635620038618 NA NA prediction 0.405116254042939 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29856192 chr16:29856191 nonsynonymous SNV 0.957 4 20 hm7G_associated_SNPs_35865 0 0 0 0 1 MVP chr16:29856200 5'GT 29856200 Upstream 10bp 32977 chr1 158815468 158815468 1 + C T LGG 158815469 + 158815449 158815489 41 GTGGTACTGAAAGCAACAGCGCCATTTAAATACGAGTCCCC GTGGTACTGAAAGCAACAGTGCCATTTAAATACGAGTCCCC < 41bp 0.498791774873495 0.702553891293942 NA NA prediction 0.405107782587883 Functional Gain - MNDA ENSG00000163563 CDS Human protein_coding chr1:158815469 chr1:158815468 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_35867 0 0 0 0 1 MNDA chr1:158815377 3'AG 158815377 Downstream 92bp 32978 chr8 125058136 125058136 1 + C T PAAD 125058137 + 125058117 125058157 41 TGGAGCTGTATGACAGCGACGCTGTGGTGAGTGTCCCCCTG TGGAGCTGTATGACAGCGATGCTGTGGTGAGTGTCCCCCTG < 41bp 0.506553091937128 0.709105929493218 NA NA prediction 0.40510567511218 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125058137 chr8:125058136 synonymous SNV . 0 20 hm7G_associated_SNPs_35868 0 0 0 0 1 FER1L6 chr8:125058142 5'GT 125058142 Upstream 7bp 32979 chr19 50766582 50766582 1 + C T UCEC 50766583 + 50766563 50766603 41 ACCCAGGGCCTTCCAGAAGCGCCAGCAGCAGCAGAGCGCCC ACCCAGGGCCTTCCAGAAGTGCCAGCAGCAGCAGAGCGCCC < 41bp 0.539779853154359 0.742331973513592 NA NA prediction 0.405104240718468 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50766583 chr19:50766582 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_35869 0 0 0 0 2 MYH14 chr19:50766569 3'AG 50766569 Downstream 14bp 32980 chr19 50766582 50766582 1 + C T UCEC 50766583 + 50766563 50766603 41 ACCCAGGGCCTTCCAGAAGCGCCAGCAGCAGCAGAGCGCCC ACCCAGGGCCTTCCAGAAGTGCCAGCAGCAGCAGAGCGCCC < 41bp 0.539779853154359 0.742331973513592 NA NA prediction 0.405104240718468 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50766583 chr19:50766582 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_35869 0 0 0 0 2 MYH14 chr19:50766677 5'GT 50766677 Upstream 96bp 32981 chr17 78172344 78172344 1 + C T rs201285077 78172345 + 78172325 78172365 41 CACCGGGTCACCCCGGGCTCGGCGGCGGACCAGATGGCCTT CACCGGGTCACCCCGGGCTTGGCGGCGGACCAGATGGCCTT < 41bp 0.494167853830684 0.702549627964512 NA NA prediction 0.405099255929024 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172345 chr17:78172344 nonsynonymous SNV 0.292 4 20 hm7G_associated_SNPs_35872 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 47bp 32982 chr13 114322338 114322338 1 + G A rs145498429 114322339 + 114322319 114322359 41 CTGCCAGATGAAGGCGACCGGCAAGCTGTATGCCTGCAAGA CTGCCAGATGAAGGCGACCAGCAAGCTGTATGCCTGCAAGA < 41bp 0.564251525985304 0.766800760311657 NA NA prediction 0.405098468652705 Functional Gain - GRK1 ENSG00000185974 CDS Human protein_coding chr13:114322339 chr13:114322338 nonsynonymous SNV 0.916 4 20 hm7G_associated_SNPs_35873 0 0 0 0 1 GRK1 chr13:114322400 5'GT 114322400 Upstream 63bp 32983 chr17 6663914 6663914 1 + G A rs34048764 6663915 + 6663895 6663935 41 CAGTGAACAGGCCCAGCTCGGGAAAGGTAAGCACACAAACT CAGTGAACAGGCCCAGCTCAGGAAAGGTAAGCACACAAACT < 41bp 0.494269680531794 0.702545876120767 NA NA prediction 0.405091752241533 Functional Gain - XAF1 ENSG00000132530 CDS Human protein_coding chr17:6663915 chr17:6663914 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_35876 0 0 0 0 1 XAF1 chr17:6663920 5'GT 6663920 Upstream 7bp 32984 chr9 131755572 131755572 1 + C T CESC 131755573 + 131755553 131755593 41 GAGCAAAATTGAGGACATGCGCATCAAAGTCATGATTCTAG GAGCAAAATTGAGGACATGTGCATCAAAGTCATGATTCTAG < 41bp 0.544326684420249 0.746872000118385 NA NA prediction 0.405090631396271 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131755573 chr9:131755572 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_35877 0 0 1 0 1 NUP188 chr9:131755476 3'AG 131755476 Downstream 97bp 32985 chrX 152825204 152825204 1 + C T UCEC 152825205 + 152825185 152825225 41 AGGACTCTCCTCTCAAAGCCGTGCAGATGTTGTGGGTGAAC AGGACTCTCCTCTCAAAGCTGTGCAGATGTTGTGGGTGAAC < 41bp 0.498609078300402 0.702544631276401 NA NA prediction 0.405089262552802 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152825205 chrX:152825204 synonymous SNV . 0 20 hm7G_associated_SNPs_35878 0 0 0 0 1 ATP2B3 chrX:152825187 3'AG 152825187 Downstream 18bp 32986 chr17 72346868 72346868 1 + C T rs2382644 72346869 + 72346849 72346889 41 GAAGCATGAGAAGTCCCGCCGGGCCCTCAAATGGCGGGAGG GAAGCATGAGAAGTCCCGCTGGGCCCTCAAATGGCGGGAGG < 41bp 0.556507774612462 0.75905232382377 NA NA prediction 0.405089098422615 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72346869 chr17:72346868 nonsynonymous SNV 0.961 3 20 hm7G_associated_SNPs_35879 0 0 0 0 1 KIF19 chr17:72346846 3'AG 72346846 Downstream 23bp 32987 chr18 6894877 6894877 1 + C T LUSC 6894878 + 6894858 6894898 41 GTACTGCAAAAATCACCCTCGGCAAGACGAATGGTAAGAAA GTACTGCAAAAATCACCCTTGGCAAGACGAATGGTAAGAAA < 41bp 0.533126939970838 0.73567061526437 NA NA prediction 0.405087350587066 Functional Gain - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6894878 chr18:6894877 nonsynonymous SNV 0.950 2 20 hm7G_associated_SNPs_35880 0 0 0 0 2 ARHGAP28 chr18:6894834 3'AG 6894834 Downstream 44bp 32988 chr18 6894877 6894877 1 + C T LUSC 6894878 + 6894858 6894898 41 GTACTGCAAAAATCACCCTCGGCAAGACGAATGGTAAGAAA GTACTGCAAAAATCACCCTTGGCAAGACGAATGGTAAGAAA < 41bp 0.533126939970838 0.73567061526437 NA NA prediction 0.405087350587066 Functional Gain - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6894878 chr18:6894877 nonsynonymous SNV 0.950 2 20 hm7G_associated_SNPs_35880 0 0 0 0 2 ARHGAP28 chr18:6894890 5'GT 6894890 Upstream 14bp 32989 chr11 60640738 60640738 1 + C T COAD 60640739 + 60640719 60640759 41 GACCCAGCCCGGCCCCCTGCGGCTTGAGCTGCGGATTGCCA GACCCAGCCCGGCCCCCTGTGGCTTGAGCTGCGGATTGCCA < 41bp 0.521770081995447 0.724313520637333 NA NA prediction 0.405086877283771 Functional Gain - ZP1 ENSG00000149506 CDS Human protein_coding chr11:60640739 chr11:60640738 nonsynonymous SNV 0.004 5 20 hm7G_associated_SNPs_35881 0 0 0 0 1 ZP1 chr11:60640762 5'GT 60640762 Upstream 25bp 32990 chr1 1219401 1219401 1 + C T rs201680784 1219402 + 1219382 1219422 41 CAGAGCTGCCAGCTGCCCCCGCAATGGCTGAGCACCGAAGC CAGAGCTGCCAGCTGCCCCTGCAATGGCTGAGCACCGAAGC < 41bp 0.500059170672479 0.702598380134024 NA NA prediction 0.405078418923091 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1219402 chr1:1219401 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_35882 0 0 0 0 2 SCNN1D chr1:1219358 3'AG 1219358 Downstream 44bp 32991 chr1 1219401 1219401 1 + C T rs201680784 1219402 + 1219382 1219422 41 CAGAGCTGCCAGCTGCCCCCGCAATGGCTGAGCACCGAAGC CAGAGCTGCCAGCTGCCCCTGCAATGGCTGAGCACCGAAGC < 41bp 0.500059170672479 0.702598380134024 NA NA prediction 0.405078418923091 Functional Gain - SCNN1D ENSG00000162572 CDS Human protein_coding chr1:1219402 chr1:1219401 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_35882 0 0 0 0 2 SCNN1D chr1:1219470 5'GT 1219470 Upstream 70bp 32992 chr22 20939413 20939413 1 + C T UCEC 20939414 + 20939394 20939434 41 AGTGGTGTGCACCCGGAAGCGCAGGCTTGAGGATGATGAGC AGTGGTGTGCACCCGGAAGTGCAGGCTTGAGGATGATGAGC < 41bp 0.514428514365558 0.716967287498133 NA NA prediction 0.405077546265151 Functional Gain - MED15 ENSG00000099917 CDS Human protein_coding chr22:20939414 chr22:20939413 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_35883 0 0 1 0 1 MED15 chr22:20939388 3'AG 20939388 Downstream 26bp 32993 chr21 45548437 45548437 1 + G A rs74692508 45548438 + 45548418 45548458 41 GAGTCTCCCTTTCAGAGCCGGGACGCTGCTGCCTGTCATTC GAGTCTCCCTTTCAGAGCCAGGACGCTGCTGCCTGTCATTC < 41bp 0.482705431226344 0.702538163485454 NA NA prediction 0.405076326970908 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45548438 chr21:45548437 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35884 0 0 1 0 2 PWP2 chr21:45548433 3'AG 45548433 Downstream 5bp 32994 chr21 45548437 45548437 1 + G A rs74692508 45548438 + 45548418 45548458 41 GAGTCTCCCTTTCAGAGCCGGGACGCTGCTGCCTGTCATTC GAGTCTCCCTTTCAGAGCCAGGACGCTGCTGCCTGTCATTC < 41bp 0.482705431226344 0.702538163485454 NA NA prediction 0.405076326970908 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45548438 chr21:45548437 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35884 0 0 1 0 2 PWP2 chr21:45548507 5'GT 45548507 Upstream 71bp 32995 chr21 43708421 43708421 1 + C T COAD 43708422 + 43708402 43708442 41 CTCAGCATCATGAGGGACTCGGTAAGGCTGCCCGCATCTTC CTCAGCATCATGAGGGACTTGGTAAGGCTGCCCGCATCTTC < 41bp 0.539642969170688 0.742175406196872 NA NA prediction 0.405064874052367 Functional Gain - ABCG1 ENSG00000160179 CDS Human protein_coding chr21:43708422 chr21:43708421 nonsynonymous SNV 0.978 0 20 hm7G_associated_SNPs_35886 0 0 0 0 1 ABCG1 chr21:43708422 5'GT 43708422 Upstream 2bp 32996 chr15 39882032 39882032 1 + G A SKCM 39882033 + 39882013 39882053 41 AGCCCCGTAACCCCTGCACGGATGGGACCCACGACTGCAAC AGCCCCGTAACCCCTGCACAGATGGGACCCACGACTGCAAC < 41bp 0.518968715273824 0.721499444530555 NA NA prediction 0.405061458513461 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39882033 chr15:39882032 synonymous SNV . 0 20 hm7G_associated_SNPs_35887 0 0 1 0 1 THBS1 chr15:39882006 3'AG 39882006 Downstream 27bp 32997 chr20 37383791 37383791 1 + C T SARC 37383792 + 37383772 37383812 41 GCTGCAGCTGGATCAGGAGCGTCTGGACCGACTGCTATATG GCTGCAGCTGGATCAGGAGTGTCTGGACCGACTGCTATATG < 41bp 0.509666802120085 0.712196902325342 NA NA prediction 0.405060200410515 Functional Gain - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37383792 chr20:37383791 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_35888 0 0 0 0 1 ACTR5 chr20:37383817 5'GT 37383817 Upstream 27bp 32998 chr15 90137718 90137718 1 + C T STAD 90137719 + 90137699 90137739 41 AATTAATACATTGCCTTGCCGAGCTCTACCAGAGAAAATCT AATTAATACATTGCCTTGCTGAGCTCTACCAGAGAAAATCT < 41bp 0.48760158128505 0.702529379386858 NA NA prediction 0.405058758773717 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90137719 chr15:90137718 synonymous SNV . 0 20 hm7G_associated_SNPs_35889 0 0 1 0 2 TICRR chr15:90137646 3'AG 90137646 Downstream 73bp 32999 chr15 90137718 90137718 1 + C T STAD 90137719 + 90137699 90137739 41 AATTAATACATTGCCTTGCCGAGCTCTACCAGAGAAAATCT AATTAATACATTGCCTTGCTGAGCTCTACCAGAGAAAATCT < 41bp 0.48760158128505 0.702529379386858 NA NA prediction 0.405058758773717 Functional Gain - TICRR ENSG00000140534 CDS Human protein_coding chr15:90137719 chr15:90137718 synonymous SNV . 0 20 hm7G_associated_SNPs_35889 0 0 1 0 2 TICRR chr15:90137785 5'GT 90137785 Upstream 68bp 33000 chr1 151262453 151262453 1 + C T UCEC 151262454 + 151262434 151262474 41 TCCCTGAGCGTGATGAATACGTGGCCCACATGAAGAAGGAG TCCCTGAGCGTGATGAATATGTGGCCCACATGAAGAAGGAG < 41bp 0.515422912802795 0.717951973906742 NA NA prediction 0.405058122207895 Functional Gain - ZNF687 ENSG00000143373 CDS Human protein_coding chr1:151262454 chr1:151262453 synonymous SNV . 0 20 hm7G_associated_SNPs_35890 0 0 1 0 1 ZNF687 chr1:151262483 5'GT 151262483 Upstream 31bp 33001 chr2 128382970 128382970 1 + C T UCEC 128382971 + 128382951 128382991 41 GCTGGTTGAGCTGCTGGCCCGGCACTGCTACGTGCAGCTCG GCTGGTTGAGCTGCTGGCCTGGCACTGCTACGTGCAGCTCG < 41bp 0.534111799267538 0.736640111858772 NA NA prediction 0.405056625182468 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128382971 chr2:128382970 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_35893 0 0 0 0 1 MYO7B chr2:128382943 3'AG 128382943 Downstream 28bp 33002 chr3 111782478 111782478 1 + C T COAD 111782479 + 111782459 111782499 41 AAAGTGATGAACTGTTTTGCGGTGGGTATTCAAGATTTTAA AAAGTGATGAACTGTTTTGTGGTGGGTATTCAAGATTTTAA < 41bp 0.502961880735817 0.705489600170749 NA NA prediction 0.405055438869865 Functional Gain - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111782479 chr3:111782478 synonymous SNV . 0 20 hm7G_associated_SNPs_35894 0 0 0 0 1 TMPRSS7 chr3:111782479 5'GT 111782479 Upstream 2bp 33003 chr1 55139413 55139413 1 + C T rs200552161 55139414 + 55139394 55139434 41 CTCTGGGAAGGCCCATGAGCGAGCACGGGCTGTGAACACCA CTCTGGGAAGGCCCATGAGTGAGCACGGGCTGTGAACACCA < 41bp 0.497468285949861 0.702523594096884 NA NA prediction 0.405047188193769 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55139414 chr1:55139413 stopgain 0.998 0 20 hm7G_associated_SNPs_35898 0 0 0 0 2 MROH7 chr1:55139374 3'AG 55139374 Downstream 40bp 33004 chr1 55139413 55139413 1 + C T rs200552161 55139414 + 55139394 55139434 41 CTCTGGGAAGGCCCATGAGCGAGCACGGGCTGTGAACACCA CTCTGGGAAGGCCCATGAGTGAGCACGGGCTGTGAACACCA < 41bp 0.497468285949861 0.702523594096884 NA NA prediction 0.405047188193769 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55139414 chr1:55139413 stopgain 0.998 0 20 hm7G_associated_SNPs_35898 0 0 0 0 2 MROH7 chr1:55139478 5'GT 55139478 Upstream 66bp 33005 chr11 65305309 65305309 1 + G A rs56076708 65305310 + 65305290 65305330 41 AGTCTGTGCTGGCCCAGCAGGACGACTGGAGCACCGGGGGC AGTCTGTGCTGGCCCAGCAAGACGACTGGAGCACCGGGGGC < 41bp 0.555722050036833 0.758245013613594 NA NA prediction 0.405045927153523 Functional Gain - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65305310 chr11:65305309 synonymous SNV . 0 20 hm7G_associated_SNPs_35899 0 0 1 0 2 SCYL1 chr11:65305280 3'AG 65305280 Downstream 30bp 33006 chr11 65305309 65305309 1 + G A rs56076708 65305310 + 65305290 65305330 41 AGTCTGTGCTGGCCCAGCAGGACGACTGGAGCACCGGGGGC AGTCTGTGCTGGCCCAGCAAGACGACTGGAGCACCGGGGGC < 41bp 0.555722050036833 0.758245013613594 NA NA prediction 0.405045927153523 Functional Gain - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65305310 chr11:65305309 synonymous SNV . 0 20 hm7G_associated_SNPs_35899 0 0 1 0 2 SCYL1 chr11:65305351 5'GT 65305351 Upstream 43bp 33007 chr3 119084258 119084258 1 + C T HNSC 119084259 + 119084239 119084279 41 AGTCACCTCAAACATACAACGGCTAAGGTAAGCTAAAAGAA AGTCACCTCAAACATACAATGGCTAAGGTAAGCTAAAAGAA < 41bp 0.531088943185179 0.733605882097535 NA NA prediction 0.405033877824712 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119084259 chr3:119084258 nonsynonymous SNV 0.912 3 20 hm7G_associated_SNPs_35902 0 0 0 0 2 ARHGAP31 chr3:119084163 3'AG 119084163 Downstream 96bp 33008 chr3 119084258 119084258 1 + C T HNSC 119084259 + 119084239 119084279 41 AGTCACCTCAAACATACAACGGCTAAGGTAAGCTAAAAGAA AGTCACCTCAAACATACAATGGCTAAGGTAAGCTAAAAGAA < 41bp 0.531088943185179 0.733605882097535 NA NA prediction 0.405033877824712 Functional Gain - ARHGAP31 ENSG00000031081 CDS Human protein_coding chr3:119084259 chr3:119084258 nonsynonymous SNV 0.912 3 20 hm7G_associated_SNPs_35902 0 0 0 0 2 ARHGAP31 chr3:119084265 5'GT 119084265 Upstream 8bp 33009 chr2 220500552 220500552 1 + C T STAD 220500553 + 220500533 220500573 41 TGCACTCCCAGTGTGTGGCCGCTGTGCTCTTCATCTACTTC TGCACTCCCAGTGTGTGGCTGCTGTGCTCTTCATCTACTTC < 41bp 0.511568547431819 0.714082482164088 NA NA prediction 0.405027869464538 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220500553 chr2:220500552 synonymous SNV . 0 20 hm7G_associated_SNPs_35904 0 0 0 0 1 SLC4A3 chr2:220500613 5'GT 220500613 Upstream 62bp 33010 chr15 90270452 90270452 1 + C T UCEC 90270453 + 90270433 90270473 41 ACTGCTACGGACTGGGCTCCGGGCAGAATCATTTCATCAAG ACTGCTACGGACTGGGCTCTGGGCAGAATCATTTCATCAAG < 41bp 0.553468914015085 0.755980572126243 NA NA prediction 0.405023316222316 Functional Gain - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90270453 chr15:90270452 synonymous SNV . 0 20 hm7G_associated_SNPs_35907 0 0 0 0 1 WDR93 chr15:90270388 3'AG 90270388 Downstream 65bp 33011 chr1 16356551 16356551 1 + C T COAD 16356552 + 16356532 16356572 41 TTACCAATCCCATCATGCCCGGGGGGTATGCTCTGGCAGGT TTACCAATCCCATCATGCCTGGGGGGTATGCTCTGGCAGGT < 41bp 0.510465202563612 0.712976389182405 NA NA prediction 0.405022373237586 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16356552 chr1:16356551 synonymous SNV . 0 20 hm7G_associated_SNPs_35908 0 0 0 0 2 CLCNKA chr1:16356460 3'AG 16356460 Downstream 92bp 33012 chr1 16356551 16356551 1 + C T COAD 16356552 + 16356532 16356572 41 TTACCAATCCCATCATGCCCGGGGGGTATGCTCTGGCAGGT TTACCAATCCCATCATGCCTGGGGGGTATGCTCTGGCAGGT < 41bp 0.510465202563612 0.712976389182405 NA NA prediction 0.405022373237586 Functional Gain - CLCNKA ENSG00000186510 CDS Human protein_coding chr1:16356552 chr1:16356551 synonymous SNV . 0 20 hm7G_associated_SNPs_35908 0 0 0 0 2 CLCNKA chr1:16356570 5'GT 16356570 Upstream 20bp 33013 chr5 167891938 167891938 1 + C T SKCM 167891939 + 167891919 167891959 41 GCGTGAGGACGAGCGTTTCCGCCTGCTGCTGAGGATGCTGG GCGTGAGGACGAGCGTTTCTGCCTGCTGCTGAGGATGCTGG < 41bp 0.550589435090071 0.753098609042164 NA NA prediction 0.405018347904186 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167891939 chr5:167891938 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_35911 0 0 1 0 1 WWC1 chr5:167891967 5'GT 167891967 Upstream 30bp 33014 chr5 150051192 150051192 1 + G A SKCM 150051193 + 150051173 150051213 41 CGCCAGGAGGAAGGTGACTGGAACAGCGGAGTCGGGGACGG CGCCAGGAGGAAGGTGACTAGAACAGCGGAGTCGGGGACGG < 41bp 0.565642801736873 0.768150548557047 NA NA prediction 0.405015493640347 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051193 chr5:150051192 nonsynonymous SNV 0.047 0 20 hm7G_associated_SNPs_35912 0 0 0 0 2 MYOZ3 chr5:150051159 3'AG 150051159 Downstream 34bp 33015 chr5 150051192 150051192 1 + G A SKCM 150051193 + 150051173 150051213 41 CGCCAGGAGGAAGGTGACTGGAACAGCGGAGTCGGGGACGG CGCCAGGAGGAAGGTGACTAGAACAGCGGAGTCGGGGACGG < 41bp 0.565642801736873 0.768150548557047 NA NA prediction 0.405015493640347 Functional Gain - MYOZ3 ENSG00000164591 CDS Human protein_coding chr5:150051193 chr5:150051192 nonsynonymous SNV 0.047 0 20 hm7G_associated_SNPs_35912 0 0 0 0 2 MYOZ3 chr5:150051212 5'GT 150051212 Upstream 21bp 33016 chr12 109519148 109519148 1 + C T COAD 109519149 + 109519129 109519169 41 TTTCTTTCAGAGTCCTGTTCGATTTGATACCTTTGATAGCC TTTCTTTCAGAGTCCTGTTTGATTTGATACCTTTGATAGCC < 41bp 0.484907498936004 0.702504976252283 NA NA prediction 0.405009952504566 Functional Gain - USP30 ENSG00000135093 CDS Human protein_coding chr12:109519149 chr12:109519148 stopgain 1.000 1 20 hm7G_associated_SNPs_35914 0 0 0 0 1 USP30 chr12:109519198 5'GT 109519198 Upstream 51bp 33017 chr1 228238382 228238382 1 + C T UCEC 228238383 + 228238363 228238403 41 GGGAGTCGGCCTTTGTCCACGCCATTGCCTCAGCCGGTGTG GGGAGTCGGCCTTTGTCCATGCCATTGCCTCAGCCGGTGTG < 41bp 0.538591120991993 0.741095102839752 NA NA prediction 0.40500796369552 Functional Gain - WNT3A ENSG00000154342 CDS Human protein_coding chr1:228238383 chr1:228238382 synonymous SNV . 0 20 hm7G_associated_SNPs_35915 0 0 0 0 1 WNT3A chr1:228238357 3'AG 228238357 Downstream 26bp 33018 chr16 57255217 57255217 1 + C T LGG 57255218 + 57255198 57255238 41 CTCCTCTTTTGAAAGTGTGCGTTGCACCTTTTGTGTGGATG CTCCTCTTTTGAAAGTGTGTGTTGCACCTTTTGTGTGGATG < 41bp 0.526437540306737 0.728941266996962 NA NA prediction 0.405007453380452 Functional Gain - RSPRY1 ENSG00000159579 CDS Human protein_coding chr16:57255218 chr16:57255217 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35916 0 0 1 0 1 RSPRY1 chr16:57255184 3'AG 57255184 Downstream 34bp 33019 chr4 81188293 81188293 1 + G T HNSC 81188294 + 81188274 81188314 41 TCCATCTGCAGATCTACCCGGATGGCAAAGTCAATGGATCC TCCATCTGCAGATCTACCCTGATGGCAAAGTCAATGGATCC < 41bp 0.69408326699824 0.896582798031116 NA NA prediction 0.404999062065752 Functional Gain - FGF5 ENSG00000138675 CDS Human protein_coding chr4:81188294 chr4:81188293 synonymous SNV . 0 20 hm7G_associated_SNPs_35921 0 0 0 0 1 FGF5 chr4:81188333 5'GT 81188333 Upstream 41bp 33020 chr9 135942276 135942276 1 + G A CESC 135942277 + 135942257 135942297 41 GCGAGCCATCAGCCAGAGCGGCGTGGCCCTGAGTCCCTGGG GCGAGCCATCAGCCAGAGCAGCGTGGCCCTGAGTCCCTGGG < 41bp 0.589733455023877 0.792229459739719 NA NA prediction 0.404992009431684 Functional Gain - CEL ENSG00000170835 CDS Human protein_coding chr9:135942277 chr9:135942276 nonsynonymous SNV 0.964 5 20 hm7G_associated_SNPs_35922 0 0 0 0 2 CEL chr9:135942225 3'AG 135942225 Downstream 52bp 33021 chr9 135942276 135942276 1 + G A CESC 135942277 + 135942257 135942297 41 GCGAGCCATCAGCCAGAGCGGCGTGGCCCTGAGTCCCTGGG GCGAGCCATCAGCCAGAGCAGCGTGGCCCTGAGTCCCTGGG < 41bp 0.589733455023877 0.792229459739719 NA NA prediction 0.404992009431684 Functional Gain - CEL ENSG00000170835 CDS Human protein_coding chr9:135942277 chr9:135942276 nonsynonymous SNV 0.964 5 20 hm7G_associated_SNPs_35922 0 0 0 0 2 CEL chr9:135942332 5'GT 135942332 Upstream 57bp 33022 chr17 27062332 27062332 1 + G A LUSC 27062333 + 27062313 27062353 41 ACCAGAAGAGTGACATCTGGGCCCTGGGCTGTGTCCTCTAC ACCAGAAGAGTGACATCTGAGCCCTGGGCTGTGTCCTCTAC < 41bp 0.580434296583771 0.782929871306374 NA NA prediction 0.404991149445206 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27062333 chr17:27062332 stopgain 1.000 1 20 hm7G_associated_SNPs_35923 0 0 1 0 2 NEK8 chr17:27062258 3'AG 27062258 Downstream 75bp 33023 chr17 27062332 27062332 1 + G A LUSC 27062333 + 27062313 27062353 41 ACCAGAAGAGTGACATCTGGGCCCTGGGCTGTGTCCTCTAC ACCAGAAGAGTGACATCTGAGCCCTGGGCTGTGTCCTCTAC < 41bp 0.580434296583771 0.782929871306374 NA NA prediction 0.404991149445206 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27062333 chr17:27062332 stopgain 1.000 1 20 hm7G_associated_SNPs_35923 0 0 1 0 2 NEK8 chr17:27062389 5'GT 27062389 Upstream 58bp 33024 chr2 74885009 74885009 1 + C T COAD 74885010 + 74884990 74885030 41 ACAATTTTGTCCAGATTCTCGCCATTGCCAATGCCTCTCAC ACAATTTTGTCCAGATTCTTGCCATTGCCAATGCCTCTCAC < 41bp 0.489034693179458 0.702495535199987 NA NA prediction 0.404991070399975 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74885010 chr2:74885009 synonymous SNV . 0 20 hm7G_associated_SNPs_35924 0 0 0 0 2 SEMA4F chr2:74884980 3'AG 74884980 Downstream 30bp 33025 chr2 74885009 74885009 1 + C T COAD 74885010 + 74884990 74885030 41 ACAATTTTGTCCAGATTCTCGCCATTGCCAATGCCTCTCAC ACAATTTTGTCCAGATTCTTGCCATTGCCAATGCCTCTCAC < 41bp 0.489034693179458 0.702495535199987 NA NA prediction 0.404991070399975 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74885010 chr2:74885009 synonymous SNV . 0 20 hm7G_associated_SNPs_35924 0 0 0 0 2 SEMA4F chr2:74885078 5'GT 74885078 Upstream 70bp 33026 chr5 176519419 176519419 1 + C T COAD 176519420 + 176519400 176519440 41 TGCTGTGCAAGGTGTACAGCGATGCCCAGCCCCACATCCAG TGCTGTGCAAGGTGTACAGTGATGCCCAGCCCCACATCCAG < 41bp 0.494969380090029 0.702495015619592 NA NA prediction 0.404990031239184 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519420 chr5:176519419 synonymous SNV . 0 20 hm7G_associated_SNPs_35926 0 0 0 0 2 FGFR4 chr5:176519322 3'AG 176519322 Downstream 98bp 33027 chr5 176519419 176519419 1 + C T COAD 176519420 + 176519400 176519440 41 TGCTGTGCAAGGTGTACAGCGATGCCCAGCCCCACATCCAG TGCTGTGCAAGGTGTACAGTGATGCCCAGCCCCACATCCAG < 41bp 0.494969380090029 0.702495015619592 NA NA prediction 0.404990031239184 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176519420 chr5:176519419 synonymous SNV . 0 20 hm7G_associated_SNPs_35926 0 0 0 0 2 FGFR4 chr5:176519512 5'GT 176519512 Upstream 94bp 33028 chr2 75081444 75081444 1 + C T COAD 75081445 + 75081425 75081465 41 CCAGTATCTCTACCACATGCGCCTCTCTGATGAGACCCTCT CCAGTATCTCTACCACATGTGCCTCTCTGATGAGACCCTCT < 41bp 0.537773784891774 0.740268495815491 NA NA prediction 0.404989421847434 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75081445 chr2:75081444 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_35928 0 0 1 0 1 HK2 chr2:75081420 3'AG 75081420 Downstream 25bp 33029 chr17 47246165 47246165 1 + C T READ 47246166 + 47246146 47246186 41 TGGATGGCTTCCCCAGCTGCGTGGTGACCAGTGGCGTGGTC TGGATGGCTTCCCCAGCTGTGTGGTGACCAGTGGCGTGGTC < 41bp 0.525832494774351 0.728323661584842 NA NA prediction 0.404982333620983 Functional Gain - B4GALNT2 ENSG00000167080 CDS Human protein_coding chr17:47246166 chr17:47246165 synonymous SNV . 0 20 hm7G_associated_SNPs_35931 0 0 0 0 1 B4GALNT2 chr17:47246262 5'GT 47246262 Upstream 98bp 33030 chr12 49937815 49937815 1 + C T BLCA 49937816 + 49937796 49937836 41 CTGCTGGATGTCATCGCAGCGCTGCCCTTTGACCTGCTACA CTGCTGGATGTCATCGCAGTGCTGCCCTTTGACCTGCTACA < 41bp 0.487033994527537 0.702491151414447 NA NA prediction 0.404982302828893 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49937816 chr12:49937815 nonsynonymous SNV 0.924 5 20 hm7G_associated_SNPs_35932 0 0 0 0 1 KCNH3 chr12:49937855 5'GT 49937855 Upstream 41bp 33031 chr2 239038867 239038867 1 + G A LIHC 239038868 + 239038848 239038888 41 TTGGGGAGCTGCTGACAGAGGATGACCTGGTCTACCTGGAG TTGGGGAGCTGCTGACAGAAGATGACCTGGTCTACCTGGAG < 41bp 0.529006071248669 0.731495445368601 NA NA prediction 0.404978748239864 Functional Gain - ESPNL ENSG00000144488 CDS Human protein_coding chr2:239038868 chr2:239038867 synonymous SNV . 0 20 hm7G_associated_SNPs_35933 0 0 0 0 1 ESPNL chr2:239038769 3'AG 239038769 Downstream 99bp 33032 chr16 843010 843010 1 + C T UCEC 843011 + 842991 843031 41 CCGACCCAGGGGTGCTGGCCGCCCTCTGTGAGAAAACTGAC CCGACCCAGGGGTGCTGGCTGCCCTCTGTGAGAAAACTGAC < 41bp 0.533885980443688 0.736375068875762 NA NA prediction 0.404978176864148 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:843011 chr16:843010 synonymous SNV . 0 20 hm7G_associated_SNPs_35934 0 0 1 1 2 CHTF18 chr16:842966 3'AG 842966 Downstream 45bp 33033 chr16 843010 843010 1 + C T UCEC 843011 + 842991 843031 41 CCGACCCAGGGGTGCTGGCCGCCCTCTGTGAGAAAACTGAC CCGACCCAGGGGTGCTGGCTGCCCTCTGTGAGAAAACTGAC < 41bp 0.533885980443688 0.736375068875762 NA NA prediction 0.404978176864148 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:843011 chr16:843010 synonymous SNV . 0 20 hm7G_associated_SNPs_35934 0 0 1 1 2 CHTF18 chr16:843064 5'GT 843064 Upstream 55bp 33034 chr6 96996133 96996133 1 + C T rs142752446 96996134 + 96996114 96996154 41 GCCCCTGAGGAGTTTATTTCGGAACTTGCTGAGTACTTAAT GCCCCTGAGGAGTTTATTTTGGAACTTGCTGAGTACTTAAT < 41bp 0.512985032896583 0.715473205080207 NA NA prediction 0.404976344367248 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96996134 chr6:96996133 nonsynonymous SNV 0.969 0 20 hm7G_associated_SNPs_35936 0 0 1 0 2 UFL1 chr6:96996040 3'AG 96996040 Downstream 94bp 33035 chr6 96996133 96996133 1 + C T rs142752446 96996134 + 96996114 96996154 41 GCCCCTGAGGAGTTTATTTCGGAACTTGCTGAGTACTTAAT GCCCCTGAGGAGTTTATTTTGGAACTTGCTGAGTACTTAAT < 41bp 0.512985032896583 0.715473205080207 NA NA prediction 0.404976344367248 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96996134 chr6:96996133 nonsynonymous SNV 0.969 0 20 hm7G_associated_SNPs_35936 0 0 1 0 2 UFL1 chr6:96996170 5'GT 96996170 Upstream 38bp 33036 chr7 107329564 107329564 1 + C T STAD 107329565 + 107329545 107329585 41 TGGCTGCATCATTTTCCATCGCTGTGGTGGCTTATGCTATT TGGCTGCATCATTTTCCATTGCTGTGGTGGCTTATGCTATT < 41bp 0.48570572817704 0.702487932673102 NA NA prediction 0.404975865346203 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107329565 chr7:107329564 synonymous SNV . 0 20 hm7G_associated_SNPs_35937 2 0 0 0 2 SLC26A4 chr7:107329498 3'AG 107329498 Downstream 67bp 33037 chr7 107329564 107329564 1 + C T STAD 107329565 + 107329545 107329585 41 TGGCTGCATCATTTTCCATCGCTGTGGTGGCTTATGCTATT TGGCTGCATCATTTTCCATTGCTGTGGTGGCTTATGCTATT < 41bp 0.48570572817704 0.702487932673102 NA NA prediction 0.404975865346203 Functional Gain - SLC26A4 ENSG00000091137 CDS Human protein_coding chr7:107329565 chr7:107329564 synonymous SNV . 0 20 hm7G_associated_SNPs_35937 2 0 0 0 2 SLC26A4 chr7:107329645 5'GT 107329645 Upstream 82bp 33038 chr17 1680560 1680560 1 + G T UCEC 1680561 + 1680541 1680581 41 TGACTCAGGTGGAACACCGGGCTGGCTTTGAGTGGAACGAG TGACTCAGGTGGAACACCGTGCTGGCTTTGAGTGGAACGAG < 41bp 0.705868526993632 0.908355360947039 NA NA prediction 0.404973667906815 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1680561 chr17:1680560 synonymous SNV . 0 20 hm7G_associated_SNPs_35938 0 0 1 0 1 SERPINF1 chr17:1680481 3'AG 1680481 Downstream 80bp 33039 chr3 39178462 39178462 1 + C T UCEC 39178463 + 39178443 39178483 41 ACAGCACTTGGGGCCAGAGCGCCATCTACCACATGGTGCAG ACAGCACTTGGGGCCAGAGTGCCATCTACCACATGGTGCAG < 41bp 0.48832940130634 0.702486048772063 NA NA prediction 0.404972097544126 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39178463 chr3:39178462 synonymous SNV . 0 20 hm7G_associated_SNPs_35939 0 0 0 0 2 TTC21A chr3:39178390 3'AG 39178390 Downstream 73bp 33040 chr3 39178462 39178462 1 + C T UCEC 39178463 + 39178443 39178483 41 ACAGCACTTGGGGCCAGAGCGCCATCTACCACATGGTGCAG ACAGCACTTGGGGCCAGAGTGCCATCTACCACATGGTGCAG < 41bp 0.48832940130634 0.702486048772063 NA NA prediction 0.404972097544126 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39178463 chr3:39178462 synonymous SNV . 0 20 hm7G_associated_SNPs_35939 0 0 0 0 2 TTC21A chr3:39178551 5'GT 39178551 Upstream 90bp 33041 chr17 77708874 77708874 1 + C T UCEC 77708875 + 77708855 77708895 41 GCTCCTTCTTCTACCCGGGCGGGAACGTCACCTACCAAGGG GCTCCTTCTTCTACCCGGGTGGGAACGTCACCTACCAAGGG < 41bp 0.527504586119816 0.729990183500549 NA NA prediction 0.404971194761466 Functional Gain - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77708875 chr17:77708874 synonymous SNV . 0 20 hm7G_associated_SNPs_35941 0 0 0 0 1 ENPP7 chr17:77708842 3'AG 77708842 Downstream 33bp 33042 chr14 94007058 94007058 1 + C T COAD 94007059 + 94007039 94007079 41 GCGAGAACATGAGCTGAACCGGCGGCGGCAGCTGGGCCTCT GCGAGAACATGAGCTGAACTGGCGGCGGCAGCTGGGCCTCT < 41bp 0.5203373715558 0.722820545439255 NA NA prediction 0.40496634776691 Functional Gain - UNC79 ENSG00000133958 CDS Human protein_coding chr14:94007059 chr14:94007058 nonsynonymous SNV 0.327 4 20 hm7G_associated_SNPs_35943 0 0 0 0 1 UNC79 chr14:94007006 3'AG 94007006 Downstream 53bp 33043 chr19 50200597 50200597 1 + C T UCEC 50200598 + 50200578 50200618 41 CACAGAATGACTTTCTCACCGGTGTGTTTCCTGCCAGCCCC CACAGAATGACTTTCTCACTGGTGTGTTTCCTGCCAGCCCC < 41bp 0.489691416533008 0.702482707460193 NA NA prediction 0.404965414920385 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50200598 chr19:50200597 synonymous SNV . 0 20 hm7G_associated_SNPs_35944 0 0 0 0 1 CPT1C chr19:50200583 3'AG 50200583 Downstream 15bp 33044 chr16 27709761 27709761 1 + C T UCEC 27709762 + 27709742 27709782 41 AAGCCATCCAGGTGGAGAACGCAGCCCTGCAGAGGGCGCTC AAGCCATCCAGGTGGAGAATGCAGCCCTGCAGAGGGCGCTC < 41bp 0.544387664070325 0.746870076384891 NA NA prediction 0.404964824629134 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27709762 chr16:27709761 synonymous SNV . 0 20 hm7G_associated_SNPs_35945 0 0 1 0 1 KIAA0556 chr16:27709821 5'GT 27709821 Upstream 61bp 33045 chr11 7570729 7570729 1 + C T READ 7570730 + 7570710 7570750 41 GCTTCTGATGCTAGTCATGCGCTGGAAGCTGCCCTGGAGCA GCTTCTGATGCTAGTCATGTGCTGGAAGCTGCCCTGGAGCA < 41bp 0.489172270383245 0.702481594148398 NA NA prediction 0.404963188296795 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7570730 chr11:7570729 nonsynonymous SNV 0.134 0 20 hm7G_associated_SNPs_35947 0 0 0 0 2 PPFIBP2 chr11:7570671 3'AG 7570671 Downstream 59bp 33046 chr11 7570729 7570729 1 + C T READ 7570730 + 7570710 7570750 41 GCTTCTGATGCTAGTCATGCGCTGGAAGCTGCCCTGGAGCA GCTTCTGATGCTAGTCATGTGCTGGAAGCTGCCCTGGAGCA < 41bp 0.489172270383245 0.702481594148398 NA NA prediction 0.404963188296795 Functional Gain - PPFIBP2 ENSG00000166387 CDS Human protein_coding chr11:7570730 chr11:7570729 nonsynonymous SNV 0.134 0 20 hm7G_associated_SNPs_35947 0 0 0 0 2 PPFIBP2 chr11:7570770 5'GT 7570770 Upstream 42bp 33047 chr4 6612992 6612992 1 + C T COAD 6612993 + 6612973 6613013 41 ACAGGCCCGTGGTGCTGTTCGGAGACCTCGCTGGTAAAGGG ACAGGCCCGTGGTGCTGTTTGGAGACCTCGCTGGTAAAGGG < 41bp 0.490158393242682 0.702481361777565 NA NA prediction 0.404962723555131 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6612993 chr4:6612992 synonymous SNV . 0 20 hm7G_associated_SNPs_35948 0 0 0 0 1 MAN2B2 chr4:6613005 5'GT 6613005 Upstream 14bp 33048 chr17 72341016 72341016 1 + G T LUAD 72341017 + 72340997 72341037 41 CCGTGCGCCAGCGCAGCCGGGTCAAGAACATCTTGCAGGAG CCGTGCGCCAGCGCAGCCGTGTCAAGAACATCTTGCAGGAG < 41bp 0.348858154697831 0.702480539252713 NA NA prediction 0.404961078505426 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72341017 chr17:72341016 synonymous SNV . 0 20 hm7G_associated_SNPs_35949 0 0 0 0 1 KIF19 chr17:72341094 5'GT 72341094 Upstream 79bp 33049 chr16 68844111 68844111 1 + C T STAD 68844112 + 68844092 68844132 41 TCTTTCAGCTCTTCTCTCACGCTGTGTCATCCAACGGGAAT TCTTTCAGCTCTTCTCTCATGCTGTGTCATCCAACGGGAAT < 41bp 0.559598340929493 0.762076036914832 NA NA prediction 0.404955391970676 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68844112 chr16:68844111 synonymous SNV . 0 20 hm7G_associated_SNPs_35950 3 0 0 0 1 CDH1 chr16:68844100 3'AG 68844100 Downstream 12bp 33050 chr20 30659560 30659560 1 + C T rs546783926 30659561 + 30659541 30659581 41 CACTGTCCTGTGTACGTGCCGGATCCCACATCCACCATCAA CACTGTCCTGTGTACGTGCTGGATCCCACATCCACCATCAA < 41bp 0.484879026376646 0.702477572861331 NA NA prediction 0.404955145722663 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30659561 chr20:30659560 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35952 0 0 0 0 2 HCK chr20:30659465 3'AG 30659465 Downstream 96bp 33051 chr20 30659560 30659560 1 + C T rs546783926 30659561 + 30659541 30659581 41 CACTGTCCTGTGTACGTGCCGGATCCCACATCCACCATCAA CACTGTCCTGTGTACGTGCTGGATCCCACATCCACCATCAA < 41bp 0.484879026376646 0.702477572861331 NA NA prediction 0.404955145722663 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30659561 chr20:30659560 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_35952 0 0 0 0 2 HCK chr20:30659585 5'GT 30659585 Upstream 26bp 33052 chr19 36124823 36124823 1 + G A UCEC 36124824 + 36124804 36124844 41 CCCGTTGGAGGTCGTCCGCGGCCTCCTGCCCCCGCTGCGCA CCCGTTGGAGGTCGTCCGCAGCCTCCTGCCCCCGCTGCGCA < 41bp 0.589191220248423 0.791665879707415 NA NA prediction 0.404949318917983 Functional Gain - RBM42 ENSG00000126254 CDS Human protein_coding chr19:36124824 chr19:36124823 nonsynonymous SNV 0.100 2 20 hm7G_associated_SNPs_35954 0 0 1 0 1 RBM42 chr19:36124921 5'GT 36124921 Upstream 99bp 33053 chr19 17922448 17922448 1 + C T HNSC 17922449 + 17922429 17922469 41 TGCTCAACGGGGATGATGACGTCTTTGCACACACAGACAAC TGCTCAACGGGGATGATGATGTCTTTGCACACACAGACAAC < 41bp 0.505583686691895 0.708058315234617 NA NA prediction 0.404949257085444 Functional Gain - B3GNT3 ENSG00000179913 CDS Human protein_coding chr19:17922449 chr19:17922448 synonymous SNV . 0 20 hm7G_associated_SNPs_35955 0 0 0 0 1 B3GNT3 chr19:17922380 3'AG 17922380 Downstream 69bp 33054 chr2 219299418 219299418 1 + G A LUSC 219299419 + 219299399 219299439 41 CAGTCTTGCTGCTATCTATGGTGTGGGAAGGTGTGTTCAGG CAGTCTTGCTGCTATCTATAGTGTGGGAAGGTGTGTTCAGG < 41bp 0.504454906090602 0.706927330323448 NA NA prediction 0.404944848465692 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219299419 chr2:219299418 stopgain 0.999 1 20 hm7G_associated_SNPs_35957 0 0 1 0 1 VIL1 chr2:219299428 5'GT 219299428 Upstream 11bp 33055 chr10 112649383 112649383 1 + G T UCEC 112649384 + 112649364 112649404 41 GAACTGTAGATTGTGTGCAGGCTAGGTAAGTAAATCACTTT GAACTGTAGATTGTGTGCATGCTAGGTAAGTAAATCACTTT < 41bp 0.692836421211844 0.895303043447995 NA NA prediction 0.404933244472301 Functional Gain - PDCD4 ENSG00000150593 CDS Human protein_coding chr10:112649384 chr10:112649383 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_35959 0 0 1 0 2 PDCD4 chr10:112649291 3'AG 112649291 Downstream 93bp 33056 chr10 112649383 112649383 1 + G T UCEC 112649384 + 112649364 112649404 41 GAACTGTAGATTGTGTGCAGGCTAGGTAAGTAAATCACTTT GAACTGTAGATTGTGTGCATGCTAGGTAAGTAAATCACTTT < 41bp 0.692836421211844 0.895303043447995 NA NA prediction 0.404933244472301 Functional Gain - PDCD4 ENSG00000150593 CDS Human protein_coding chr10:112649384 chr10:112649383 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_35959 0 0 1 0 2 PDCD4 chr10:112649388 5'GT 112649388 Upstream 6bp 33057 chr14 24035806 24035806 1 - G A UCEC 24035805 - 24035785 24035825 41 TTCTATTGGATGAGAGGCACGATGCCCACCTGCTCATTACC TTCTATTGGATGAGAGGCATGATGCCCACCTGCTCATTACC < 41bp 0.528281952696171 0.730746922310518 NA NA prediction 0.404929939228692 Functional Gain - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24035805 chr14:24035806 synonymous SNV . 0 20 hm7G_associated_SNPs_35962 0 0 1 0 2 AP1G2 chr14:24035771 5'GT 24035771 Upstream 36bp 33058 chr14 24035806 24035806 1 - G A UCEC 24035805 - 24035785 24035825 41 TTCTATTGGATGAGAGGCACGATGCCCACCTGCTCATTACC TTCTATTGGATGAGAGGCATGATGCCCACCTGCTCATTACC < 41bp 0.528281952696171 0.730746922310518 NA NA prediction 0.404929939228692 Functional Gain - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24035805 chr14:24035806 synonymous SNV . 0 20 hm7G_associated_SNPs_35962 0 0 1 0 2 AP1G2 chr14:24035895 3'AG 24035895 Downstream 90bp 33059 chr15 75942572 75942572 1 + C T PAAD 75942573 + 75942553 75942593 41 CTTGCAGGACGTGGAAGATCGCGTGGACACTTTCAAGGCCT CTTGCAGGACGTGGAAGATTGCGTGGACACTTTCAAGGCCT < 41bp 0.503267455876227 0.705732242889575 NA NA prediction 0.404929574026696 Functional Gain - SNX33 ENSG00000173548 CDS Human protein_coding chr15:75942573 chr15:75942572 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_35963 0 0 0 0 1 SNX33 chr15:75942649 5'GT 75942649 Upstream 78bp 33060 chr1 156130700 156130700 1 + C T ESCA 156130701 + 156130681 156130721 41 GCCCCTCCCCCGCAGATGACGCCTCCTTTGTGGCAGCCATC GCCCCTCCCCCGCAGATGATGCCTCCTTTGTGGCAGCCATC < 41bp 0.549086372924908 0.751551152697406 NA NA prediction 0.404929559544997 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156130701 chr1:156130700 synonymous SNV . 0 20 hm7G_associated_SNPs_35964 0 0 0 0 1 SEMA4A chr1:156130696 3'AG 156130696 Downstream 5bp 33061 chr16 81398581 81398581 1 + C T rs61740238 81398582 + 81398562 81398602 41 TTGTTCTCTGCTTTCAGATCGGCTGCTATGCAGCTATGAAA TTGTTCTCTGCTTTCAGATTGGCTGCTATGCAGCTATGAAA < 41bp 0.547713375894817 0.750177980207971 NA NA prediction 0.404929208626308 Functional Gain - GAN ENSG00000261609 CDS Human protein_coding chr16:81398582 chr16:81398581 synonymous SNV . 0 20 hm7G_associated_SNPs_35965 1 0 1 0 1 GAN chr16:81398579 3'AG 81398579 Downstream 3bp 33062 chr16 216426 216426 1 + G A SKCM 216427 + 216407 216447 41 CCGCGCTGAGCCCGCTGGCGGACCTGCACGCGCTCGTGCTG CCGCGCTGAGCCCGCTGGCAGACCTGCACGCGCTCGTGCTG < 41bp 0.577434380167247 0.779898786457796 NA NA prediction 0.404928812581098 Functional Gain - HBM ENSG00000206177 CDS Human protein_coding chr16:216427 chr16:216426 synonymous SNV . 0 20 hm7G_associated_SNPs_35966 0 0 0 0 1 HBM chr16:216471 5'GT 216471 Upstream 46bp 33063 chr2 88405935 88405935 1 + C T SKCM 88405936 + 88405916 88405956 41 CGGATGCTGAGCATTGTTTCGGAGGTCCTTTCCTACCTCCA CGGATGCTGAGCATTGTTTTGGAGGTCCTTTCCTACCTCCA < 41bp 0.547083933655179 0.749544198311848 NA NA prediction 0.404920529313338 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88405936 chr2:88405935 nonsynonymous SNV 0.028 0 20 hm7G_associated_SNPs_35971 0 0 0 0 2 SMYD1 chr2:88405844 3'AG 88405844 Downstream 92bp 33064 chr2 88405935 88405935 1 + C T SKCM 88405936 + 88405916 88405956 41 CGGATGCTGAGCATTGTTTCGGAGGTCCTTTCCTACCTCCA CGGATGCTGAGCATTGTTTTGGAGGTCCTTTCCTACCTCCA < 41bp 0.547083933655179 0.749544198311848 NA NA prediction 0.404920529313338 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88405936 chr2:88405935 nonsynonymous SNV 0.028 0 20 hm7G_associated_SNPs_35971 0 0 0 0 2 SMYD1 chr2:88406007 5'GT 88406007 Upstream 73bp 33065 chr9 130488607 130488607 1 + G A rs142193455 130488608 + 130488588 130488628 41 CTGTACCGGGCCAAGAGCCGGCAGCTGCTGCAGAACATTTT CTGTACCGGGCCAAGAGCCAGCAGCTGCTGCAGAACATTTT < 41bp 0.568428375363418 0.770888550234168 NA NA prediction 0.404920349741501 Functional Gain - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130488608 chr9:130488607 nonsynonymous SNV 0.918 1 20 hm7G_associated_SNPs_35972 0 0 0 0 2 TTC16 chr9:130488518 3'AG 130488518 Downstream 90bp 33066 chr9 130488607 130488607 1 + G A rs142193455 130488608 + 130488588 130488628 41 CTGTACCGGGCCAAGAGCCGGCAGCTGCTGCAGAACATTTT CTGTACCGGGCCAAGAGCCAGCAGCTGCTGCAGAACATTTT < 41bp 0.568428375363418 0.770888550234168 NA NA prediction 0.404920349741501 Functional Gain - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130488608 chr9:130488607 nonsynonymous SNV 0.918 1 20 hm7G_associated_SNPs_35972 0 0 0 0 2 TTC16 chr9:130488683 5'GT 130488683 Upstream 77bp 33067 chr17 79427988 79427988 1 + C T LUAD 79427989 + 79427969 79428009 41 CCCTTGCTGAGCTGGTCCGCGGTGGCGCAGACCAAGCGGAA CCCTTGCTGAGCTGGTCCGTGGTGGCGCAGACCAAGCGGAA < 41bp 0.499031583454706 0.702459845193951 NA NA prediction 0.404919690387902 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79427989 chr17:79427988 nonsynonymous SNV 0.276 0 20 hm7G_associated_SNPs_35973 0 0 0 0 1 BAHCC1 chr17:79427892 3'AG 79427892 Downstream 97bp 33068 chr17 73724536 73724536 1 + C T UCEC 73724537 + 73724517 73724557 41 AAAGTCAGCGTCCCGCAGACGGACATGAGGCCTGAGAAGTA AAAGTCAGCGTCCCGCAGATGGACATGAGGCCTGAGAAGTA < 41bp 0.526978972278252 0.729437955933035 NA NA prediction 0.404917967309566 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73724537 chr17:73724536 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_35974 0 0 0 0 2 ITGB4 chr17:73724458 3'AG 73724458 Downstream 79bp 33069 chr17 73724536 73724536 1 + C T UCEC 73724537 + 73724517 73724557 41 AAAGTCAGCGTCCCGCAGACGGACATGAGGCCTGAGAAGTA AAAGTCAGCGTCCCGCAGATGGACATGAGGCCTGAGAAGTA < 41bp 0.526978972278252 0.729437955933035 NA NA prediction 0.404917967309566 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73724537 chr17:73724536 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_35974 0 0 0 0 2 ITGB4 chr17:73724554 5'GT 73724554 Upstream 19bp 33070 chr11 47270255 47270255 1 - C T rs2167079 47270254 - 47270234 47270274 41 GTGGTGATGCCGCCCACCCGGGCCCGGAGTCTGCGCTTCGT GTGGTGATGCCGCCCACCCAGGCCCGGAGTCTGCGCTTCGT < 41bp 0.560604939747155 0.763062981807399 NA NA prediction 0.404916084120488 Functional Gain - ACP2 ENSG00000134575 CDS Human protein_coding chr11:47270254 chr11:47270255 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_35975 0 1 1 0 1 ACP2 chr11:47270227 5'GT 47270227 Upstream 29bp 33071 chr22 25264711 25264711 1 + C T UCEC 25264712 + 25264692 25264732 41 CAAAGTGTTTCCTAAACTGCGCAAGCGAAGCCCTCAGGGTT CAAAGTGTTTCCTAAACTGTGCAAGCGAAGCCCTCAGGGTT < 41bp 0.534920474993258 0.73737557097467 NA NA prediction 0.404910191962825 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25264712 chr22:25264711 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_35977 0 0 0 0 1 SGSM1 chr22:25264690 3'AG 25264690 Downstream 22bp 33072 chr12 107114555 107114555 1 + G A SKCM 107114556 + 107114536 107114576 41 GGTGGCTGCCAAGAGACAAGGGTCCTTGAAGAAAGTGGCCC GGTGGCTGCCAAGAGACAAAGGTCCTTGAAGAAAGTGGCCC < 41bp 0.489189809888187 0.702455093584581 NA NA prediction 0.404910187169162 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107114556 chr12:107114555 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35978 0 0 0 0 2 RFX4 chr12:107114537 3'AG 107114537 Downstream 19bp 33073 chr12 107114555 107114555 1 + G A SKCM 107114556 + 107114536 107114576 41 GGTGGCTGCCAAGAGACAAGGGTCCTTGAAGAAAGTGGCCC GGTGGCTGCCAAGAGACAAAGGTCCTTGAAGAAAGTGGCCC < 41bp 0.489189809888187 0.702455093584581 NA NA prediction 0.404910187169162 Functional Gain - RFX4 ENSG00000111783 CDS Human protein_coding chr12:107114556 chr12:107114555 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35978 0 0 0 0 2 RFX4 chr12:107114654 5'GT 107114654 Upstream 100bp 33074 chr17 74878351 74878351 1 + C T SKCM 74878352 + 74878332 74878372 41 GCAGTGAGCTGCACCGGGCCGGCGGCGACCTGCACTTTCCC GCAGTGAGCTGCACCGGGCTGGCGGCGACCTGCACTTTCCC < 41bp 0.539099988886989 0.741554573978304 NA NA prediction 0.404909170182629 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74878352 chr17:74878351 synonymous SNV . 0 20 hm7G_associated_SNPs_35979 0 0 0 0 1 MGAT5B chr17:74878380 5'GT 74878380 Upstream 30bp 33075 chr11 294187 294187 1 + C T UCEC 294188 + 294168 294208 41 GCGGTGGTCTTCGGGTGCACGGGGTTCAGGTAAGTGCAGAG GCGGTGGTCTTCGGGTGCATGGGGTTCAGGTAAGTGCAGAG < 41bp 0.521300545459084 0.723750473873173 NA NA prediction 0.404899856828178 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:294188 chr11:294187 nonsynonymous SNV 0.228 4 20 hm7G_associated_SNPs_35984 0 0 1 0 3 PGGHG chr11:294099 3'AG 294099 Downstream 89bp 33076 chr11 294187 294187 1 + C T UCEC 294188 + 294168 294208 41 GCGGTGGTCTTCGGGTGCACGGGGTTCAGGTAAGTGCAGAG GCGGTGGTCTTCGGGTGCATGGGGTTCAGGTAAGTGCAGAG < 41bp 0.521300545459084 0.723750473873173 NA NA prediction 0.404899856828178 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:294188 chr11:294187 nonsynonymous SNV 0.228 4 20 hm7G_associated_SNPs_35984 0 0 1 0 3 PGGHG chr11:294196 5'GT 294196 Upstream 10bp 33077 chr11 294187 294187 1 + C T UCEC 294188 + 294168 294208 41 GCGGTGGTCTTCGGGTGCACGGGGTTCAGGTAAGTGCAGAG GCGGTGGTCTTCGGGTGCATGGGGTTCAGGTAAGTGCAGAG < 41bp 0.521300545459084 0.723750473873173 NA NA prediction 0.404899856828178 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:294188 chr11:294187 nonsynonymous SNV 0.228 4 20 hm7G_associated_SNPs_35984 0 0 1 0 3 PGGHG chr11:294267 5'GT 294267 Upstream 81bp 33078 chrX 9862479 9862479 1 + C T UCEC 9862480 + 9862460 9862500 41 ACTTCAGCTCCTTGGGGAGCGTTGACAGCCTGGACCACCCC ACTTCAGCTCCTTGGGGAGTGTTGACAGCCTGGACCACCCC < 41bp 0.497895189693523 0.702448923258703 NA NA prediction 0.404897846517406 Functional Gain - SHROOM2 ENSG00000146950 CDS Human protein_coding chrX:9862480 chrX:9862479 synonymous SNV . 0 20 hm7G_associated_SNPs_35986 0 0 0 0 1 SHROOM2 chrX:9862398 3'AG 9862398 Downstream 82bp 33079 chr18 77473127 77473127 1 + C T rs2279103 77473128 + 77473108 77473148 41 GGGTCCCGAGAATCTCAGACGAGAAAGAAAGGTGGGTAACC GGGTCCCGAGAATCTCAGATGAGAAAGAAAGGTGGGTAACC < 41bp 0.534117910849588 0.73656482012855 NA NA prediction 0.404893818557925 Functional Gain - CTDP1 ENSG00000060069 CDS Human protein_coding chr18:77473128 chr18:77473127 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_35987 1 0 1 0 1 CTDP1 chr18:77473138 5'GT 77473138 Upstream 12bp 33080 chr18 61558785 61558785 1 + C T SKCM 61558786 + 61558766 61558806 41 CTCTCCCCATGGAGCATCTCGTCCACCATGGCCATGGTCTA CTCTCCCCATGGAGCATCTTGTCCACCATGGCCATGGTCTA < 41bp 0.500842493478762 0.703289109262189 NA NA prediction 0.404893231566855 Functional Gain - SERPINB2 ENSG00000197632 CDS Human protein_coding chr18:61558786 chr18:61558785 nonsynonymous SNV 0.917 4 20 hm7G_associated_SNPs_35988 0 0 0 0 1 SERPINB2 chr18:61558846 5'GT 61558846 Upstream 62bp 33081 chr16 31373963 31373963 1 + G T BRCA 31373964 + 31373944 31373984 41 AGCTGGCCCTCTGGAAAGGGGTGCAGAGCCTGGTCCTGGGG AGCTGGCCCTCTGGAAAGGTGTGCAGAGCCTGGTCCTGGGG < 41bp 0.356875832094088 0.702446592572296 NA NA prediction 0.404893185144591 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31373964 chr16:31373963 synonymous SNV . 0 20 hm7G_associated_SNPs_35989 0 0 0 0 1 ITGAX chr16:31373932 3'AG 31373932 Downstream 32bp 33082 chr2 234854586 234854586 1 + C T COAD 234854587 + 234854567 234854607 41 ACCACACACATTTGCTGCTCGTGGACAATGGCTGTCATGGA ACCACACACATTTGCTGCTTGTGGACAATGGCTGTCATGGA < 41bp 0.508140243891923 0.710586434269547 NA NA prediction 0.404892380755248 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234854587 chr2:234854586 synonymous SNV . 0 20 hm7G_associated_SNPs_35990 0 0 0 0 2 TRPM8 chr2:234854500 3'AG 234854500 Downstream 87bp 33083 chr2 234854586 234854586 1 + C T COAD 234854587 + 234854567 234854607 41 ACCACACACATTTGCTGCTCGTGGACAATGGCTGTCATGGA ACCACACACATTTGCTGCTTGTGGACAATGGCTGTCATGGA < 41bp 0.508140243891923 0.710586434269547 NA NA prediction 0.404892380755248 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234854587 chr2:234854586 synonymous SNV . 0 20 hm7G_associated_SNPs_35990 0 0 0 0 2 TRPM8 chr2:234854674 5'GT 234854674 Upstream 89bp 33084 chr5 141312917 141312917 1 + C T UCEC 141312918 + 141312898 141312938 41 AGCAAAGCGCAGTACAATGCGGGCTTGTGTCATGAGCATGG AGCAAAGCGCAGTACAATGTGGGCTTGTGTCATGAGCATGG < 41bp 0.537415888210339 0.739860121674816 NA NA prediction 0.404888466928954 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141312918 chr5:141312917 nonsynonymous SNV 0.106 0 20 hm7G_associated_SNPs_35993 0 0 1 0 2 KIAA0141 chr5:141312824 3'AG 141312824 Downstream 94bp 33085 chr5 141312917 141312917 1 + C T UCEC 141312918 + 141312898 141312938 41 AGCAAAGCGCAGTACAATGCGGGCTTGTGTCATGAGCATGG AGCAAAGCGCAGTACAATGTGGGCTTGTGTCATGAGCATGG < 41bp 0.537415888210339 0.739860121674816 NA NA prediction 0.404888466928954 Functional Gain - KIAA0141 ENSG00000081791 CDS Human protein_coding chr5:141312918 chr5:141312917 nonsynonymous SNV 0.106 0 20 hm7G_associated_SNPs_35993 0 0 1 0 2 KIAA0141 chr5:141312966 5'GT 141312966 Upstream 50bp 33086 chr2 233394841 233394841 1 + C T UCEC 233394842 + 233394822 233394862 41 AACCTGGTCTTCTACCTACCGGCTGACAGTGAGCCTCCAGG AACCTGGTCTTCTACCTACTGGCTGACAGTGAGCCTCCAGG < 41bp 0.507936900731112 0.710380098055268 NA NA prediction 0.404886394648312 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233394842 chr2:233394841 nonsynonymous SNV 0.685 5 20 hm7G_associated_SNPs_35994 0 0 0 0 1 CHRND chr2:233394849 5'GT 233394849 Upstream 9bp 33087 chr12 132636183 132636183 1 + G A rs200091849 132636184 + 132636164 132636204 41 CCTCGTGCACCGTCCACACGGCCCTGGTGAGTTGCGGGGCC CCTCGTGCACCGTCCACACAGCCCTGGTGAGTTGCGGGGCC < 41bp 0.589595039135849 0.792036966665482 NA NA prediction 0.404883855059265 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132636184 chr12:132636183 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_35995 0 0 0 0 1 NOC4L chr12:132636189 5'GT 132636189 Upstream 7bp 33088 chr2 112944738 112944738 1 + G A BLCA 112944739 + 112944719 112944759 41 AGCGGAACCCCTGCCCCATGGACAGCAGGCCCTGCCGCCAT AGCGGAACCCCTGCCCCATAGACAGCAGGCCCTGCCGCCAT < 41bp 0.554487733828475 0.756929571356751 NA NA prediction 0.404883675056553 Functional Gain - FBLN7 ENSG00000144152 CDS Human protein_coding chr2:112944739 chr2:112944738 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_35996 0 0 0 0 1 FBLN7 chr2:112944711 3'AG 112944711 Downstream 28bp 33089 chr17 33588077 33588077 1 + C T SKCM 33588078 + 33588058 33588098 41 GTGTGCATTCATAAGAATTCGGAATGTCTGAAAGAGCAGCA GTGTGCATTCATAAGAATTTGGAATGTCTGAAAGAGCAGCA < 41bp 0.549209905813829 0.751649561712151 NA NA prediction 0.404879311796642 Functional Gain - SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33588078 chr17:33588077 nonsynonymous SNV 0.053 0 20 hm7G_associated_SNPs_35997 0 0 1 0 2 SLFN5 chr17:33587990 3'AG 33587990 Downstream 88bp 33090 chr17 33588077 33588077 1 + C T SKCM 33588078 + 33588058 33588098 41 GTGTGCATTCATAAGAATTCGGAATGTCTGAAAGAGCAGCA GTGTGCATTCATAAGAATTTGGAATGTCTGAAAGAGCAGCA < 41bp 0.549209905813829 0.751649561712151 NA NA prediction 0.404879311796642 Functional Gain - SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33588078 chr17:33588077 nonsynonymous SNV 0.053 0 20 hm7G_associated_SNPs_35997 0 0 1 0 2 SLFN5 chr17:33588115 5'GT 33588115 Upstream 39bp 33091 chr16 68844204 68844204 1 + G T LGG 68844205 + 68844185 68844225 41 ACAAGCCCGAATTCACCCAGGAGGTCTTTAAGGGGTCTGTC ACAAGCCCGAATTCACCCATGAGGTCTTTAAGGGGTCTGTC < 41bp 0.347491538995789 0.702439359929016 NA NA prediction 0.404878719858031 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68844205 chr16:68844204 nonsynonymous SNV 0.275 1 20 hm7G_associated_SNPs_35998 0 0 0 0 1 CDH1 chr16:68844244 5'GT 68844244 Upstream 41bp 33092 chr1 16378215 16378215 1 + C T rs5252 16378216 + 16378196 16378236 41 TGTGGCCAGGAGCTGCTATCGGGCGCCTCTTTGGGGAGACT TGTGGCCAGGAGCTGCTATTGGGCGCCTCTTTGGGGAGACT < 41bp 0.488883600634801 0.702439007462096 NA NA prediction 0.404878014924192 Functional Gain - CLCNKB ENSG00000184908 CDS Human protein_coding chr1:16378216 chr1:16378215 synonymous SNV . 0 20 hm7G_associated_SNPs_35999 0 0 0 0 1 CLCNKB chr1:16378205 3'AG 16378205 Downstream 11bp 33093 chr9 101751495 101751495 1 + C T CESC 101751496 + 101751476 101751516 41 GTGGGCTGCAGGAGGCAGACGGAGTAGCTGAGATCTTAGAA GTGGGCTGCAGGAGGCAGATGGAGTAGCTGAGATCTTAGAA < 41bp 0.548899969663441 0.751337697650529 NA NA prediction 0.404875455974177 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101751496 chr9:101751495 synonymous SNV . 0 20 hm7G_associated_SNPs_36000 0 0 0 0 2 COL15A1 chr9:101751460 3'AG 101751460 Downstream 36bp 33094 chr9 101751495 101751495 1 + C T CESC 101751496 + 101751476 101751516 41 GTGGGCTGCAGGAGGCAGACGGAGTAGCTGAGATCTTAGAA GTGGGCTGCAGGAGGCAGATGGAGTAGCTGAGATCTTAGAA < 41bp 0.548899969663441 0.751337697650529 NA NA prediction 0.404875455974177 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101751496 chr9:101751495 synonymous SNV . 0 20 hm7G_associated_SNPs_36000 0 0 0 0 2 COL15A1 chr9:101751540 5'GT 101751540 Upstream 46bp 33095 chr8 143558000 143558000 1 + G A rs373422611 143558001 + 143557981 143558021 41 CGGTCCACAGATGCCCGGCGGCGCGAGGAGCTGGGGGACGA CGGTCCACAGATGCCCGGCAGCGCGAGGAGCTGGGGGACGA < 41bp 0.582616759613293 0.785053470578766 NA NA prediction 0.404873421930946 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558001 chr8:143558000 nonsynonymous SNV 0.951 1 20 hm7G_associated_SNPs_36001 0 0 0 0 2 ADGRB1 chr8:143557946 3'AG 143557946 Downstream 55bp 33096 chr8 143558000 143558000 1 + G A rs373422611 143558001 + 143557981 143558021 41 CGGTCCACAGATGCCCGGCGGCGCGAGGAGCTGGGGGACGA CGGTCCACAGATGCCCGGCAGCGCGAGGAGCTGGGGGACGA < 41bp 0.582616759613293 0.785053470578766 NA NA prediction 0.404873421930946 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143558001 chr8:143558000 nonsynonymous SNV 0.951 1 20 hm7G_associated_SNPs_36001 0 0 0 0 2 ADGRB1 chr8:143558056 5'GT 143558056 Upstream 57bp 33097 chr11 490449 490449 1 + G A UCEC 490450 + 490430 490470 41 TTGAGGTACAAGGAGACCCGGTGGCAGAAGTGGCAGAACAA TTGAGGTACAAGGAGACCCAGTGGCAGAAGTGGCAGAACAA < 41bp 0.500747395315786 0.703183178006134 NA NA prediction 0.404871565380695 Functional Gain - PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:490450 chr11:490449 nonsynonymous SNV 0.736 2 20 hm7G_associated_SNPs_36002 0 0 1 0 1 PTDSS2 chr11:490420 3'AG 490420 Downstream 30bp 33098 chr2 46608858 46608858 1 + C T COAD 46608859 + 46608839 46608879 41 AAGCCTTCCAGGACCTGAGCGGGGTGAGTCATCCCCACTGG AAGCCTTCCAGGACCTGAGTGGGGTGAGTCATCCCCACTGG < 41bp 0.532189149958964 0.734624745545217 NA NA prediction 0.404871191172505 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46608859 chr2:46608858 synonymous SNV . 0 20 hm7G_associated_SNPs_36003 0 0 1 0 1 EPAS1 chr2:46608861 5'GT 46608861 Upstream 4bp 33099 chr17 40817778 40817778 1 + C T BLCA 40817779 + 40817759 40817799 41 CTCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCT CTCATCGGCCTCATCGCCTTGCTCATTCCCACCCCACGGCT < 41bp 0.538296681969506 0.740731266920225 NA NA prediction 0.404869169901439 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817779 chr17:40817778 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_36004 0 0 0 0 2 TUBG2 chr17:40817696 3'AG 40817696 Downstream 83bp 33100 chr17 40817778 40817778 1 + C T BLCA 40817779 + 40817759 40817799 41 CTCATCGGCCTCATCGCCTCGCTCATTCCCACCCCACGGCT CTCATCGGCCTCATCGCCTTGCTCATTCCCACCCCACGGCT < 41bp 0.538296681969506 0.740731266920225 NA NA prediction 0.404869169901439 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40817779 chr17:40817778 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_36004 0 0 0 0 2 TUBG2 chr17:40817845 5'GT 40817845 Upstream 68bp 33101 chr4 158256915 158256915 1 + C T BLCA 158256916 + 158256896 158256936 41 TTGACCTGGCTGCAGAAATCGCCAAACATTGTGGGTTCAAG TTGACCTGGCTGCAGAAATTGCCAAACATTGTGGGTTCAAG < 41bp 0.49492603852328 0.702432219056356 NA NA prediction 0.404864438112712 Functional Gain - GRIA2 ENSG00000120251 CDS Human protein_coding chr4:158256916 chr4:158256915 synonymous SNV . 0 20 hm7G_associated_SNPs_36007 0 0 0 0 1 GRIA2 chr4:158256823 3'AG 158256823 Downstream 93bp 33102 chr1 154228170 154228170 1 + C T COAD 154228171 + 154228151 154228191 41 TCTGACAGCACGTTATCTACGCAGCAGAATACCCTTTCATC TCTGACAGCACGTTATCTATGCAGCAGAATACCCTTTCATC < 41bp 0.523108874866191 0.725540227646302 NA NA prediction 0.404862705560222 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154228171 chr1:154228170 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_36008 0 0 1 0 2 UBAP2L chr1:154228159 3'AG 154228159 Downstream 12bp 33103 chr1 154228170 154228170 1 + C T COAD 154228171 + 154228151 154228191 41 TCTGACAGCACGTTATCTACGCAGCAGAATACCCTTTCATC TCTGACAGCACGTTATCTATGCAGCAGAATACCCTTTCATC < 41bp 0.523108874866191 0.725540227646302 NA NA prediction 0.404862705560222 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154228171 chr1:154228170 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_36008 0 0 1 0 2 UBAP2L chr1:154228231 5'GT 154228231 Upstream 62bp 33104 chr1 247597517 247597517 1 + G T LUAD 247597518 + 247597498 247597538 41 CAACGCCCTCGGTGACTTCGGAATCAGACTTCTGTGTGTGG CAACGCCCTCGGTGACTTCTGAATCAGACTTCTGTGTGTGG < 41bp 0.358106738659654 0.702430924682898 NA NA prediction 0.404861849365796 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247597518 chr1:247597517 stopgain 0.661 1 20 hm7G_associated_SNPs_36009 0 0 0 0 2 NLRP3 chr1:247597465 3'AG 247597465 Downstream 53bp 33105 chr1 247597517 247597517 1 + G T LUAD 247597518 + 247597498 247597538 41 CAACGCCCTCGGTGACTTCGGAATCAGACTTCTGTGTGTGG CAACGCCCTCGGTGACTTCTGAATCAGACTTCTGTGTGTGG < 41bp 0.358106738659654 0.702430924682898 NA NA prediction 0.404861849365796 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247597518 chr1:247597517 stopgain 0.661 1 20 hm7G_associated_SNPs_36009 0 0 0 0 2 NLRP3 chr1:247597575 5'GT 247597575 Upstream 59bp 33106 chr19 18968215 18968215 1 + C T BLCA 18968216 + 18968196 18968236 41 GGCTGTCACAGTCGCTCTTCGAGCGCCTGGTGGTGCTGGGC GGCTGTCACAGTCGCTCTTTGAGCGCCTGGTGGTGCTGGGC < 41bp 0.504429800895044 0.706857787615929 NA NA prediction 0.404855973441769 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18968216 chr19:18968215 synonymous SNV . 0 20 hm7G_associated_SNPs_36010 0 0 1 0 1 UPF1 chr19:18968129 3'AG 18968129 Downstream 87bp 33107 chr12 56420653 56420653 1 + C T COAD 56420654 + 56420634 56420674 41 TCCTGGAAAAGGACGACAGCGTGATTGTGGAAGATTCATTG TCCTGGAAAAGGACGACAGTGTGATTGTGGAAGATTCATTG < 41bp 0.502700938041906 0.705127417762213 NA NA prediction 0.404852959440614 Functional Gain - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56420654 chr12:56420653 synonymous SNV . 0 20 hm7G_associated_SNPs_36011 0 0 1 0 1 IKZF4 chr12:56420565 3'AG 56420565 Downstream 89bp 33108 chr14 103369741 103369741 1 + C T rs1051743 103369742 + 103369722 103369762 41 TGGAGAGCGTGGACAAGAGCGCGGGGCAAGTGGCTCGGAAC TGGAGAGCGTGGACAAGAGTGCGGGGCAAGTGGCTCGGAAC < 41bp 0.494408477251071 0.702426365506361 NA NA prediction 0.404852731012722 Functional Gain - TRAF3 ENSG00000131323 CDS Human protein_coding chr14:103369742 chr14:103369741 synonymous SNV . 0 20 hm7G_associated_SNPs_36012 0 0 0 0 1 TRAF3 chr14:103369766 5'GT 103369766 Upstream 26bp 33109 chr3 183906551 183906551 1 + C T UCEC 183906552 + 183906532 183906572 41 GTTTCTCCTCCCTCCAGGGCGGAGGGCTCTGAAGCTGCAGA GTTTCTCCTCCCTCCAGGGTGGAGGGCTCTGAAGCTGCAGA < 41bp 0.5533598436162 0.755785783724025 NA NA prediction 0.40485188021565 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906552 chr3:183906551 nonsynonymous SNV 0.160 1 20 hm7G_associated_SNPs_36013 0 0 1 0 2 ABCF3 chr3:183906549 3'AG 183906549 Downstream 3bp 33110 chr3 183906551 183906551 1 + C T UCEC 183906552 + 183906532 183906572 41 GTTTCTCCTCCCTCCAGGGCGGAGGGCTCTGAAGCTGCAGA GTTTCTCCTCCCTCCAGGGTGGAGGGCTCTGAAGCTGCAGA < 41bp 0.5533598436162 0.755785783724025 NA NA prediction 0.40485188021565 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906552 chr3:183906551 nonsynonymous SNV 0.160 1 20 hm7G_associated_SNPs_36013 0 0 1 0 2 ABCF3 chr3:183906629 5'GT 183906629 Upstream 79bp 33111 chr5 145641354 145641354 1 + C T HNSC 145641355 + 145641335 145641375 41 CTGCTCCTTCAACAGTGCACGGAGGTATCCAGAAGGTAATC CTGCTCCTTCAACAGTGCATGGAGGTATCCAGAAGGTAATC < 41bp 0.490936930847687 0.702425479710924 NA NA prediction 0.404850959421847 Functional Gain - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145641355 chr5:145641354 synonymous SNV . 0 20 hm7G_associated_SNPs_36014 0 0 1 0 1 RBM27 chr5:145641369 5'GT 145641369 Upstream 16bp 33112 chr2 85255079 85255079 1 + C T UCEC 85255080 + 85255060 85255100 41 ATAAGTGTTTAATTTGCTACGATTACGATCTTTGTGCATCT ATAAGTGTTTAATTTGCTATGATTACGATCTTTGTGCATCT < 41bp 0.508356547051511 0.710781811040957 NA NA prediction 0.404850527978891 Functional Gain - KCMF1 ENSG00000176407 CDS Human protein_coding chr2:85255080 chr2:85255079 synonymous SNV . 0 20 hm7G_associated_SNPs_36015 0 0 1 0 1 KCMF1 chr2:85255012 3'AG 85255012 Downstream 68bp 33113 chr17 27068496 27068496 1 + G T LUSC 27068497 + 27068477 27068517 41 AAGGAGGGATGAGGATGCCGGACTCCCTCGGCCAGTGCAGT AAGGAGGGATGAGGATGCCTGACTCCCTCGGCCAGTGCAGT < 41bp 0.711922374964615 0.914344711293483 NA NA prediction 0.404844672657737 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068497 chr17:27068496 stopgain 0.733 1 20 hm7G_associated_SNPs_36019 0 0 1 0 2 NEK8 chr17:27068431 3'AG 27068431 Downstream 66bp 33114 chr17 27068496 27068496 1 + G T LUSC 27068497 + 27068477 27068517 41 AAGGAGGGATGAGGATGCCGGACTCCCTCGGCCAGTGCAGT AAGGAGGGATGAGGATGCCTGACTCCCTCGGCCAGTGCAGT < 41bp 0.711922374964615 0.914344711293483 NA NA prediction 0.404844672657737 Functional Gain - NEK8 ENSG00000160602 CDS Human protein_coding chr17:27068497 chr17:27068496 stopgain 0.733 1 20 hm7G_associated_SNPs_36019 0 0 1 0 2 NEK8 chr17:27068589 5'GT 27068589 Upstream 94bp 33115 chr9 35852919 35852919 1 + C T rs201246215 35852920 + 35852900 35852940 41 TCCTGGGCTCCTTAATGTCCGTGTGGGTCACTGTCATTGCC TCCTGGGCTCCTTAATGTCTGTGTGGGTCACTGTCATTGCC < 41bp 0.517309367617997 0.719731152061534 NA NA prediction 0.404843568887074 Functional Gain - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35852920 chr9:35852919 synonymous SNV . 0 20 hm7G_associated_SNPs_36020 0 0 0 0 2 TMEM8B chr9:35852824 3'AG 35852824 Downstream 96bp 33116 chr9 35852919 35852919 1 + C T rs201246215 35852920 + 35852900 35852940 41 TCCTGGGCTCCTTAATGTCCGTGTGGGTCACTGTCATTGCC TCCTGGGCTCCTTAATGTCTGTGTGGGTCACTGTCATTGCC < 41bp 0.517309367617997 0.719731152061534 NA NA prediction 0.404843568887074 Functional Gain - TMEM8B ENSG00000137103 CDS Human protein_coding chr9:35852920 chr9:35852919 synonymous SNV . 0 20 hm7G_associated_SNPs_36020 0 0 0 0 2 TMEM8B chr9:35852970 5'GT 35852970 Upstream 52bp 33117 chr5 10461439 10461439 1 + G A COAD 10461440 + 10461420 10461460 41 ATGTGTCTCCCTTGGAGACGGAATCCTACCTTGCCTCTCTA ATGTGTCTCCCTTGGAGACAGAATCCTACCTTGCCTCTCTA < 41bp 0.508836971958882 0.711256138192902 NA NA prediction 0.404838332468041 Functional Gain - ROPN1L ENSG00000145491 CDS Human protein_coding chr5:10461440 chr5:10461439 synonymous SNV . 0 20 hm7G_associated_SNPs_36023 0 0 0 0 1 ROPN1L chr5:10461471 5'GT 10461471 Upstream 33bp 33118 chr5 147693698 147693698 1 + G A LUSC 147693699 + 147693679 147693719 41 ACAAGAAGTATCCAGTGGTGGCCATCCCCTGCCCCATCACA ACAAGAAGTATCCAGTGGTAGCCATCCCCTGCCCCATCACA < 41bp 0.523984989417819 0.726403666484171 NA NA prediction 0.404837354132703 Functional Gain - SPINK7 ENSG00000145879 CDS Human protein_coding chr5:147693699 chr5:147693698 synonymous SNV . 0 20 hm7G_associated_SNPs_36024 0 0 0 0 2 SPINK7 chr5:147693663 3'AG 147693663 Downstream 36bp 33119 chr5 147693698 147693698 1 + G A LUSC 147693699 + 147693679 147693719 41 ACAAGAAGTATCCAGTGGTGGCCATCCCCTGCCCCATCACA ACAAGAAGTATCCAGTGGTAGCCATCCCCTGCCCCATCACA < 41bp 0.523984989417819 0.726403666484171 NA NA prediction 0.404837354132703 Functional Gain - SPINK7 ENSG00000145879 CDS Human protein_coding chr5:147693699 chr5:147693698 synonymous SNV . 0 20 hm7G_associated_SNPs_36024 0 0 0 0 2 SPINK7 chr5:147693787 5'GT 147693787 Upstream 90bp 33120 chr11 33094059 33094059 1 + C T rs118146715 33094060 + 33094040 33094080 41 TTAGAAACCTACCTTGCCTCGGGTCATCAGAAGCCATTGCC TTAGAAACCTACCTTGCCTTGGGTCATCAGAAGCCATTGCC < 41bp 0.526342860167339 0.728760801304788 NA NA prediction 0.404835882274898 Functional Gain - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33094060 chr11:33094059 nonsynonymous SNV 0.981 1 20 hm7G_associated_SNPs_36025 0 0 1 2 1 TCP11L1 chr11:33094020 3'AG 33094020 Downstream 40bp 33121 chr11 62159022 62159022 1 + C T UCEC 62159023 + 62159003 62159043 41 GTTATGCCGACAATGACATCGGAGCCGTCTCAACCACAGGG GTTATGCCGACAATGACATTGGAGCCGTCTCAACCACAGGG < 41bp 0.550727103285154 0.753143638529401 NA NA prediction 0.404833070488493 Functional Gain - ASRGL1 ENSG00000162174 CDS Human protein_coding chr11:62159023 chr11:62159022 synonymous SNV . 0 20 hm7G_associated_SNPs_36026 0 0 0 0 2 ASRGL1 chr11:62158994 3'AG 62158994 Downstream 29bp 33122 chr11 62159022 62159022 1 + C T UCEC 62159023 + 62159003 62159043 41 GTTATGCCGACAATGACATCGGAGCCGTCTCAACCACAGGG GTTATGCCGACAATGACATTGGAGCCGTCTCAACCACAGGG < 41bp 0.550727103285154 0.753143638529401 NA NA prediction 0.404833070488493 Functional Gain - ASRGL1 ENSG00000162174 CDS Human protein_coding chr11:62159023 chr11:62159022 synonymous SNV . 0 20 hm7G_associated_SNPs_36026 0 0 0 0 2 ASRGL1 chr11:62159104 5'GT 62159104 Upstream 83bp 33123 chr7 96635628 96635628 1 + C T rs183079486 96635629 + 96635609 96635649 41 CCTACAACCACCGCTCGCTCGCCGCCTACCCCTACATGAGC CCTACAACCACCGCTCGCTTGCCGCCTACCCCTACATGAGC < 41bp 0.499776913912173 0.70241621994598 NA NA prediction 0.40483243989196 Functional Gain - DLX6 ENSG00000006377 CDS Human protein_coding chr7:96635629 chr7:96635628 synonymous SNV . 0 20 hm7G_associated_SNPs_36027 0 0 0 0 1 DLX6 chr7:96635725 5'GT 96635725 Upstream 98bp 33124 chr1 207755267 207755267 1 + C T UCEC 207755268 + 207755248 207755288 41 TGCTTTGTTCTTTAGGTTTCGCTTAAAGGGCAGTTCCGTTA TGCTTTGTTCTTTAGGTTTTGCTTAAAGGGCAGTTCCGTTA < 41bp 0.499208459957997 0.702414736954019 NA NA prediction 0.404829473908038 Functional Gain - CR1 ENSG00000203710 CDS Human protein_coding chr1:207755268 chr1:207755267 nonsynonymous SNV 0.069 2 20 hm7G_associated_SNPs_36028 0 0 0 0 2 CR1 chr1:207755263 3'AG 207755263 Downstream 5bp 33125 chr1 207755267 207755267 1 + C T UCEC 207755268 + 207755248 207755288 41 TGCTTTGTTCTTTAGGTTTCGCTTAAAGGGCAGTTCCGTTA TGCTTTGTTCTTTAGGTTTTGCTTAAAGGGCAGTTCCGTTA < 41bp 0.499208459957997 0.702414736954019 NA NA prediction 0.404829473908038 Functional Gain - CR1 ENSG00000203710 CDS Human protein_coding chr1:207755268 chr1:207755267 nonsynonymous SNV 0.069 2 20 hm7G_associated_SNPs_36028 0 0 0 0 2 CR1 chr1:207755348 5'GT 207755348 Upstream 82bp 33126 chr11 479107 479107 1 + C T STAD 479108 + 479088 479128 41 ACTGGAGGTTTTGGCTCTGCGTGAGTGTGGTCTACGAGCTG ACTGGAGGTTTTGGCTCTGTGTGAGTGTGGTCTACGAGCTG < 41bp 0.505585747010722 0.707999936597153 NA NA prediction 0.404828379172862 Functional Gain - PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:479108 chr11:479107 synonymous SNV . 0 20 hm7G_associated_SNPs_36029 0 0 1 0 2 PTDSS2 chr11:479085 3'AG 479085 Downstream 23bp 33127 chr11 479107 479107 1 + C T STAD 479108 + 479088 479128 41 ACTGGAGGTTTTGGCTCTGCGTGAGTGTGGTCTACGAGCTG ACTGGAGGTTTTGGCTCTGTGTGAGTGTGGTCTACGAGCTG < 41bp 0.505585747010722 0.707999936597153 NA NA prediction 0.404828379172862 Functional Gain - PTDSS2 ENSG00000174915 CDS Human protein_coding chr11:479108 chr11:479107 synonymous SNV . 0 20 hm7G_associated_SNPs_36029 0 0 1 0 2 PTDSS2 chr11:479152 5'GT 479152 Upstream 46bp 33128 chr3 127682121 127682121 1 + C T rs138448623 127682122 + 127682102 127682142 41 CCCAGATGGGGACTTTTGGCGAGAGGGCCCTCCCATGCCAA CCCAGATGGGGACTTTTGGTGAGAGGGCCCTCCCATGCCAA < 41bp 0.533087503398417 0.735501161814824 NA NA prediction 0.404827316832814 Functional Gain - KBTBD12 ENSG00000187715 CDS Human protein_coding chr3:127682122 chr3:127682121 stopgain 0.992 1 20 hm7G_associated_SNPs_36032 0 0 0 0 1 KBTBD12 chr3:127682032 3'AG 127682032 Downstream 90bp 33129 chr14 75264365 75264365 1 + C T SKCM 75264366 + 75264346 75264386 41 GCCTCGTTTTGAAGGAAATCGCCCCGATGGGCCAAGACCCA GCCTCGTTTTGAAGGAAATTGCCCCGATGGGCCAAGACCCA < 41bp 0.495360040467191 0.702412067483878 NA NA prediction 0.404824134967755 Functional Gain - YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75264366 chr14:75264365 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_36033 0 0 1 0 1 YLPM1 chr14:75264283 3'AG 75264283 Downstream 83bp 33130 chr4 5735137 5735137 1 + C T UCEC 5735138 + 5735118 5735158 41 GACCTGCTGCATTTGGACACGGCACTGAGGCAGGAAAAGCA GACCTGCTGCATTTGGACATGGCACTGAGGCAGGAAAAGCA < 41bp 0.54403777851194 0.746448984106677 NA NA prediction 0.404822411189474 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5735138 chr4:5735137 nonsynonymous SNV 0.300 0 20 hm7G_associated_SNPs_36034 2 0 0 0 1 EVC chr4:5735162 5'GT 5735162 Upstream 26bp 33131 chr16 1812463 1812463 1 + C T UCEC 1812464 + 1812444 1812484 41 GGAGCTGCAGGAGGCTGTGCGGTGGACTGAGATGATCAGGT GGAGCTGCAGGAGGCTGTGTGGTGGACTGAGATGATCAGGT < 41bp 0.524828006396121 0.727238726341903 NA NA prediction 0.404821439891563 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1812464 chr16:1812463 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_36035 0 0 1 0 1 MAPK8IP3 chr16:1812482 5'GT 1812482 Upstream 20bp 33132 chr22 21351028 21351028 1 + C T HNSC 21351029 + 21351009 21351049 41 CTACGGCTTCTACAACAACCGGCTGCAGGCGTACTGCAAGC CTACGGCTTCTACAACAACTGGCTGCAGGCGTACTGCAAGC < 41bp 0.527703071102007 0.730113677773039 NA NA prediction 0.404821213342063 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21351029 chr22:21351028 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36036 0 0 1 0 2 LZTR1 chr22:21350985 3'AG 21350985 Downstream 44bp 33133 chr22 21351028 21351028 1 + C T HNSC 21351029 + 21351009 21351049 41 CTACGGCTTCTACAACAACCGGCTGCAGGCGTACTGCAAGC CTACGGCTTCTACAACAACTGGCTGCAGGCGTACTGCAAGC < 41bp 0.527703071102007 0.730113677773039 NA NA prediction 0.404821213342063 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21351029 chr22:21351028 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36036 0 0 1 0 2 LZTR1 chr22:21351090 5'GT 21351090 Upstream 63bp 33134 chr9 104075142 104075142 1 + C T STAD 104075143 + 104075123 104075163 41 CCAAGCCGGTGCTGTGCCTCGGAACTCTCTGCACAGCCTTC CCAAGCCGGTGCTGTGCCTTGGAACTCTCTGCACAGCCTTC < 41bp 0.537078679900625 0.739488893047709 NA NA prediction 0.404820426294169 Functional Gain - PLPPR1 ENSG00000148123 CDS Human protein_coding chr9:104075143 chr9:104075142 synonymous SNV . 0 20 hm7G_associated_SNPs_36037 0 0 0 0 1 PLPPR1 chr9:104075080 3'AG 104075080 Downstream 63bp 33135 chr21 34617303 34617303 1 + C T UCEC 34617304 + 34617284 34617324 41 GATATCATTGCGAAATTTCCGGTCCATCTTATCATGGGAAT GATATCATTGCGAAATTTCTGGTCCATCTTATCATGGGAAT < 41bp 0.528662457767387 0.7310694119609 NA NA prediction 0.404813908387027 Functional Gain - IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34617304 chr21:34617303 nonsynonymous SNV 0.895 3 20 hm7G_associated_SNPs_36038 0 0 1 0 2 IFNAR2 chr21:34617256 3'AG 34617256 Downstream 48bp 33136 chr21 34617303 34617303 1 + C T UCEC 34617304 + 34617284 34617324 41 GATATCATTGCGAAATTTCCGGTCCATCTTATCATGGGAAT GATATCATTGCGAAATTTCTGGTCCATCTTATCATGGGAAT < 41bp 0.528662457767387 0.7310694119609 NA NA prediction 0.404813908387027 Functional Gain - IFNAR2 ENSG00000159110 CDS Human protein_coding chr21:34617304 chr21:34617303 nonsynonymous SNV 0.895 3 20 hm7G_associated_SNPs_36038 0 0 1 0 2 IFNAR2 chr21:34617379 5'GT 34617379 Upstream 77bp 33137 chr12 131590404 131590404 1 + G A rs4759544 131590405 + 131590385 131590425 41 TTAGTTTCCGCCTCGAGCCGGGCACGGTGAGTGGGCGCAGC TTAGTTTCCGCCTCGAGCCAGGCACGGTGAGTGGGCGCAGC < 41bp 0.543489398359589 0.745894236172477 NA NA prediction 0.404809675625775 Functional Gain - ADGRD1 ENSG00000111452 CDS Human protein_coding chr12:131590405 chr12:131590404 synonymous SNV . 0 20 hm7G_associated_SNPs_36039 0 0 0 0 1 ADGRD1 chr12:131590410 5'GT 131590410 Upstream 7bp 33138 chr6 100056651 100056651 1 + C T UCEC 100056652 + 100056632 100056672 41 GGGGAGCTGGTGGACGAGTCGGGGGGCTCCCCTCTGGAGTG GGGGAGCTGGTGGACGAGTTGGGGGGCTCCCCTCTGGAGTG < 41bp 0.535928861317979 0.738332996801641 NA NA prediction 0.404808270967324 Functional Gain - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056652 chr6:100056651 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_36040 0 0 0 0 2 PRDM13 chr6:100056617 3'AG 100056617 Downstream 35bp 33139 chr6 100056651 100056651 1 + C T UCEC 100056652 + 100056632 100056672 41 GGGGAGCTGGTGGACGAGTCGGGGGGCTCCCCTCTGGAGTG GGGGAGCTGGTGGACGAGTTGGGGGGCTCCCCTCTGGAGTG < 41bp 0.535928861317979 0.738332996801641 NA NA prediction 0.404808270967324 Functional Gain - PRDM13 ENSG00000112238 CDS Human protein_coding chr6:100056652 chr6:100056651 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_36040 0 0 0 0 2 PRDM13 chr6:100056748 5'GT 100056748 Upstream 98bp 33140 chr4 106861771 106861771 1 + G T UCEC 106861772 + 106861752 106861792 41 AATGTAAAGAAGGATACCAGGGTGATGGACTGACTTGTGTG AATGTAAAGAAGGATACCATGGTGATGGACTGACTTGTGTG < 41bp 0.709855749099821 0.912259748574428 NA NA prediction 0.404807998949213 Functional Gain - NPNT ENSG00000168743 CDS Human protein_coding chr4:106861772 chr4:106861771 nonsynonymous SNV 0.882 2 20 hm7G_associated_SNPs_36041 0 0 1 0 1 NPNT chr4:106861793 5'GT 106861793 Upstream 23bp 33141 chr15 91450649 91450649 1 + C T UCEC 91450650 + 91450630 91450670 41 CTGCCAATTTGATTTCAAACGCCTGCCTGGTGGGCGCATCA CTGCCAATTTGATTTCAAATGCCTGCCTGGTGGGCGCATCA < 41bp 0.550628555336227 0.753032362235248 NA NA prediction 0.404807613798043 Functional Gain - MAN2A2 ENSG00000196547 CDS Human protein_coding chr15:91450650 chr15:91450649 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_36042 0 0 1 0 1 MAN2A2 chr15:91450725 5'GT 91450725 Upstream 77bp 33142 chr17 53014508 53014508 1 + C T UCEC 53014509 + 53014489 53014529 41 CCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCCCGG CCCCATCTCAAGATCTCCTTGACCTAAGTCCCAGTCCCCGG < 41bp 0.513972688689355 0.716375062773914 NA NA prediction 0.404804748169117 Functional Gain - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014509 chr17:53014508 synonymous SNV . 0 20 hm7G_associated_SNPs_36043 0 0 1 2 2 TOM1L1 chr17:53014470 3'AG 53014470 Downstream 39bp 33143 chr17 53014508 53014508 1 + C T UCEC 53014509 + 53014489 53014529 41 CCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCCCGG CCCCATCTCAAGATCTCCTTGACCTAAGTCCCAGTCCCCGG < 41bp 0.513972688689355 0.716375062773914 NA NA prediction 0.404804748169117 Functional Gain - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:53014509 chr17:53014508 synonymous SNV . 0 20 hm7G_associated_SNPs_36043 0 0 1 2 2 TOM1L1 chr17:53014587 5'GT 53014587 Upstream 80bp 33144 chr19 1054314 1054314 1 + C T UCEC 1054315 + 1054295 1054335 41 GCGCTTTCTGCTTGCCCGCCGCAGCCGCCGCGGCCTGTTCG GCGCTTTCTGCTTGCCCGCTGCAGCCGCCGCGGCCTGTTCG < 41bp 0.53743943500405 0.739841625908416 NA NA prediction 0.404804381808732 Functional Gain - ABCA7 ENSG00000064687 CDS Human protein_coding chr19:1054315 chr19:1054314 nonsynonymous SNV 0.990 4 20 hm7G_associated_SNPs_36044 0 0 1 0 1 ABCA7 chr19:1054340 5'GT 1054340 Upstream 27bp 33145 chr4 186320918 186320918 1 + G T UCEC 186320919 + 186320899 186320939 41 GAAAATACCAGTGGGAAAAGGAAGTGCTGGTAAGTAACTCA GAAAATACCAGTGGGAAAATGAAGTGCTGGTAAGTAACTCA < 41bp 0.688916383192402 0.891317917639283 NA NA prediction 0.404803068893762 Functional Gain - ANKRD37 ENSG00000186352 CDS Human protein_coding chr4:186320919 chr4:186320918 nonsynonymous SNV 0.055 4 20 hm7G_associated_SNPs_36045 0 0 0 0 1 ANKRD37 chr4:186320927 5'GT 186320927 Upstream 10bp 33146 chr4 74316386 74316386 1 + G A LUSC 74316387 + 74316367 74316407 41 TGACCTCGTCGGAGCTGATGGCCATCACCAGAAAAATGGCA TGACCTCGTCGGAGCTGATAGCCATCACCAGAAAAATGGCA < 41bp 0.527121134511472 0.729521714310176 NA NA prediction 0.404801159597408 Functional Gain - AFP ENSG00000081051 CDS Human protein_coding chr4:74316387 chr4:74316386 nonsynonymous SNV 0.272 0 20 hm7G_associated_SNPs_36046 0 0 1 0 2 AFP chr4:74316332 3'AG 74316332 Downstream 55bp 33147 chr4 74316386 74316386 1 + G A LUSC 74316387 + 74316367 74316407 41 TGACCTCGTCGGAGCTGATGGCCATCACCAGAAAAATGGCA TGACCTCGTCGGAGCTGATAGCCATCACCAGAAAAATGGCA < 41bp 0.527121134511472 0.729521714310176 NA NA prediction 0.404801159597408 Functional Gain - AFP ENSG00000081051 CDS Human protein_coding chr4:74316387 chr4:74316386 nonsynonymous SNV 0.272 0 20 hm7G_associated_SNPs_36046 0 0 1 0 2 AFP chr4:74316470 5'GT 74316470 Upstream 85bp 33148 chr2 217311815 217311815 1 + C T rs145825654 217311816 + 217311796 217311836 41 AGCTCTACACGCAGATCATCGCAGTCAAGCCAACTTTCTTC AGCTCTACACGCAGATCATTGCAGTCAAGCCAACTTTCTTC < 41bp 0.509987958196761 0.712388507418482 NA NA prediction 0.404801098443443 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311816 chr2:217311815 synonymous SNV . 0 20 hm7G_associated_SNPs_36047 0 0 0 0 2 SMARCAL1 chr2:217311741 3'AG 217311741 Downstream 75bp 33149 chr2 217311815 217311815 1 + C T rs145825654 217311816 + 217311796 217311836 41 AGCTCTACACGCAGATCATCGCAGTCAAGCCAACTTTCTTC AGCTCTACACGCAGATCATTGCAGTCAAGCCAACTTTCTTC < 41bp 0.509987958196761 0.712388507418482 NA NA prediction 0.404801098443443 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217311816 chr2:217311815 synonymous SNV . 0 20 hm7G_associated_SNPs_36047 0 0 0 0 2 SMARCAL1 chr2:217311881 5'GT 217311881 Upstream 67bp 33150 chr14 100996162 100996162 1 + G A LUSC 100996163 + 100996143 100996183 41 GTCCCTCTCTGCAGGTGGAGGGCTACTCAGTGGGCTGCGAG GTCCCTCTCTGCAGGTGGAAGGCTACTCAGTGGGCTGCGAG < 41bp 0.532368237121736 0.734764849017821 NA NA prediction 0.40479322379217 Functional Gain - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100996163 chr14:100996162 synonymous SNV . 0 20 hm7G_associated_SNPs_36050 0 0 0 0 1 WDR25 chr14:100996157 3'AG 100996157 Downstream 6bp 33151 chr12 122361822 122361822 1 + C T UCEC 122361823 + 122361803 122361843 41 GTCCAAAGCAGGGATCTCCCGGGAGTCACTGGTGTCCAGCA GTCCAAAGCAGGGATCTCCTGGGAGTCACTGGTGTCCAGCA < 41bp 0.494791854486323 0.702394036592155 NA NA prediction 0.404788073184309 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122361823 chr12:122361822 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_36051 0 0 0 0 1 WDR66 chr12:122361896 5'GT 122361896 Upstream 75bp 33152 chr16 22269009 22269009 1 + G T UCEC 22269010 + 22268990 22269030 41 TACTCTCATGCCTGCAACCGGATTTGCGAGAGCATGGGCCT TACTCTCATGCCTGCAACCTGATTTGCGAGAGCATGGGCCT < 41bp 0.714131081090332 0.916523247464476 NA NA prediction 0.404784332748287 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22269010 chr16:22269009 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_36053 0 0 1 0 2 EEF2K chr16:22268964 3'AG 22268964 Downstream 46bp 33153 chr16 22269009 22269009 1 + G T UCEC 22269010 + 22268990 22269030 41 TACTCTCATGCCTGCAACCGGATTTGCGAGAGCATGGGCCT TACTCTCATGCCTGCAACCTGATTTGCGAGAGCATGGGCCT < 41bp 0.714131081090332 0.916523247464476 NA NA prediction 0.404784332748287 Functional Gain - EEF2K ENSG00000103319 CDS Human protein_coding chr16:22269010 chr16:22269009 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_36053 0 0 1 0 2 EEF2K chr16:22269091 5'GT 22269091 Upstream 83bp 33154 chr22 37457163 37457163 1 + C T ESCA 37457164 + 37457144 37457184 41 CCCAGTCATCTCAGGATCCCGCTAACCTTTTCTCCCTCCCA CCCAGTCATCTCAGGATCCTGCTAACCTTTTCTCCCTCCCA < 41bp 0.516689645557311 0.719080727196564 NA NA prediction 0.404782163278506 Functional Gain - KCTD17 ENSG00000100379 CDS Human protein_coding chr22:37457164 chr22:37457163 synonymous SNV . 0 20 hm7G_associated_SNPs_36054 0 0 1 0 2 KCTD17 chr22:37457144 3'AG 37457144 Downstream 20bp 33155 chr22 37457163 37457163 1 + C T ESCA 37457164 + 37457144 37457184 41 CCCAGTCATCTCAGGATCCCGCTAACCTTTTCTCCCTCCCA CCCAGTCATCTCAGGATCCTGCTAACCTTTTCTCCCTCCCA < 41bp 0.516689645557311 0.719080727196564 NA NA prediction 0.404782163278506 Functional Gain - KCTD17 ENSG00000100379 CDS Human protein_coding chr22:37457164 chr22:37457163 synonymous SNV . 0 20 hm7G_associated_SNPs_36054 0 0 1 0 2 KCTD17 chr22:37457215 5'GT 37457215 Upstream 53bp 33156 chr2 131799448 131799448 1 + C T UCEC 131799449 + 131799429 131799469 41 ACGTGGCCCAGCTCATCAACGAGCGGAAGCGGAGACTTGAG ACGTGGCCCAGCTCATCAATGAGCGGAAGCGGAGACTTGAG < 41bp 0.512318533575758 0.714708832511365 NA NA prediction 0.404780597871214 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131799449 chr2:131799448 synonymous SNV . 0 20 hm7G_associated_SNPs_36056 0 0 0 0 2 ARHGEF4 chr2:131799388 3'AG 131799388 Downstream 61bp 33157 chr2 131799448 131799448 1 + C T UCEC 131799449 + 131799429 131799469 41 ACGTGGCCCAGCTCATCAACGAGCGGAAGCGGAGACTTGAG ACGTGGCCCAGCTCATCAATGAGCGGAAGCGGAGACTTGAG < 41bp 0.512318533575758 0.714708832511365 NA NA prediction 0.404780597871214 Functional Gain - ARHGEF4 ENSG00000136002 CDS Human protein_coding chr2:131799449 chr2:131799448 synonymous SNV . 0 20 hm7G_associated_SNPs_36056 0 0 0 0 2 ARHGEF4 chr2:131799517 5'GT 131799517 Upstream 70bp 33158 chr1 116206829 116206829 1 + C T UCEC 116206830 + 116206810 116206850 41 CAGCTGCAGCCCATGTTCACGCTGCAGGTGGTCCGCTCCAC CAGCTGCAGCCCATGTTCATGCTGCAGGTGGTCCGCTCCAC < 41bp 0.542286734056267 0.744676131982512 NA NA prediction 0.404778795852489 Functional Gain - VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116206830 chr1:116206829 nonsynonymous SNV 0.957 2 20 hm7G_associated_SNPs_36057 0 0 1 0 1 VANGL1 chr1:116206889 5'GT 116206889 Upstream 61bp 33159 chr7 8062174 8062174 1 + G T LUAD 8062175 + 8062155 8062195 41 CATCAGCGTTCTGCGTCATGGGGGAGTGCTGATCAACTAAA CATCAGCGTTCTGCGTCATTGGGGAGTGCTGATCAACTAAA < 41bp 0.354729025962688 0.702388411086741 NA NA prediction 0.404776822173481 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8062175 chr7:8062174 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36058 0 0 1 0 2 GLCCI1 chr7:8062113 3'AG 8062113 Downstream 62bp 33160 chr7 8062174 8062174 1 + G T LUAD 8062175 + 8062155 8062195 41 CATCAGCGTTCTGCGTCATGGGGGAGTGCTGATCAACTAAA CATCAGCGTTCTGCGTCATTGGGGAGTGCTGATCAACTAAA < 41bp 0.354729025962688 0.702388411086741 NA NA prediction 0.404776822173481 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8062175 chr7:8062174 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36058 0 0 1 0 2 GLCCI1 chr7:8062199 5'GT 8062199 Upstream 26bp 33161 chr2 39893487 39893487 1 + C T STAD 39893488 + 39893468 39893508 41 CTACTTCCTGGGCATCGACCGGGACATCGACACCCTCATCC CTACTTCCTGGGCATCGACTGGGACATCGACACCCTCATCC < 41bp 0.522607636589406 0.724995399306651 NA NA prediction 0.40477552543449 Functional Gain - TMEM178A ENSG00000152154 CDS Human protein_coding chr2:39893488 chr2:39893487 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_36059 0 0 0 0 1 TMEM178A chr2:39893514 5'GT 39893514 Upstream 28bp 33162 chr22 46733690 46733690 1 + G A UCEC 46733691 + 46733671 46733711 41 CGCAGGTTACCAGGTGACAGGGGTGTTTATGAAGAACTGGG CGCAGGTTACCAGGTGACAAGGGTGTTTATGAAGAACTGGG < 41bp 0.496276697179178 0.702386886911216 NA NA prediction 0.404773773822433 Functional Gain - TRMU ENSG00000100416 CDS Human protein_coding chr22:46733691 chr22:46733690 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36060 0 0 1 0 1 TRMU chr22:46733676 3'AG 46733676 Downstream 15bp 33163 chr10 94654572 94654572 1 + C T COAD 94654573 + 94654553 94654593 41 GCAAGTTACTGATACCAACCGAAGGTTTCAAGATGCTGGAA GCAAGTTACTGATACCAACTGAAGGTTTCAAGATGCTGGAA < 41bp 0.504104759455206 0.706490779876921 NA NA prediction 0.404772040843431 Functional Gain - EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94654573 chr10:94654572 stopgain 1.000 1 20 hm7G_associated_SNPs_36061 0 0 1 0 2 EXOC6 chr10:94654551 3'AG 94654551 Downstream 22bp 33164 chr10 94654572 94654572 1 + C T COAD 94654573 + 94654553 94654593 41 GCAAGTTACTGATACCAACCGAAGGTTTCAAGATGCTGGAA GCAAGTTACTGATACCAACTGAAGGTTTCAAGATGCTGGAA < 41bp 0.504104759455206 0.706490779876921 NA NA prediction 0.404772040843431 Functional Gain - EXOC6 ENSG00000138190 CDS Human protein_coding chr10:94654573 chr10:94654572 stopgain 1.000 1 20 hm7G_associated_SNPs_36061 0 0 1 0 2 EXOC6 chr10:94654598 5'GT 94654598 Upstream 27bp 33165 chrX 70680544 70680544 1 + C T UCEC 70680545 + 70680525 70680565 41 AATAAGACCCAAACAACCCCGCATGCTTCAGGAGAACACAA AATAAGACCCAAACAACCCTGCATGCTTCAGGAGAACACAA < 41bp 0.513841925588691 0.716226918363477 NA NA prediction 0.404769985549573 Functional Gain - TAF1 ENSG00000147133 CDS Human protein_coding chrX:70680545 chrX:70680544 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_36062 0 0 1 0 1 TAF1 chrX:70680476 3'AG 70680476 Downstream 69bp 33166 chr15 92988132 92988132 1 + C T UCEC 92988133 + 92988113 92988153 41 GTGCGCACTGCATACCCCTCGCTGCGCCTGCTGCACGCCGT GTGCGCACTGCATACCCCTTGCTGCGCCTGCTGCACGCCGT < 41bp 0.537369675084576 0.739754002572526 NA NA prediction 0.404768654975901 Functional Gain - ST8SIA2 ENSG00000140557 CDS Human protein_coding chr15:92988133 chr15:92988132 nonsynonymous SNV 0.963 4 20 hm7G_associated_SNPs_36063 0 0 0 0 1 ST8SIA2 chr15:92988159 5'GT 92988159 Upstream 28bp 33167 chr7 44797455 44797455 1 + C T rs371322762 44797456 + 44797436 44797476 41 TCTCTTCCTAGATGGGGGCCGGACAGTCTTTTAACAGCCAG TCTCTTCCTAGATGGGGGCTGGACAGTCTTTTAACAGCCAG < 41bp 0.485899318715188 0.70238423670616 NA NA prediction 0.40476847341232 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44797456 chr7:44797455 synonymous SNV . 0 20 hm7G_associated_SNPs_36064 0 0 1 0 1 ZMIZ2 chr7:44797447 3'AG 44797447 Downstream 9bp 33168 chr12 666022 666022 1 + C T COAD 666023 + 666003 666043 41 ACCGAGCCGTGGTCCACTTCGTCGTGCCTGGTGAGCCTCAA ACCGAGCCGTGGTCCACTTTGTCGTGCCTGGTGAGCCTCAA < 41bp 0.517019521262455 0.71940246170201 NA NA prediction 0.404765880879109 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:666023 chr12:666022 synonymous SNV . 0 20 hm7G_associated_SNPs_36066 0 0 1 0 1 B4GALNT3 chr12:666032 5'GT 666032 Upstream 11bp 33169 chr1 46489645 46489645 1 + C T COAD 46489646 + 46489626 46489666 41 TGTGCATGGTGATGGAGTACGTTGAAGGTACTGAGGCAAAG TGTGCATGGTGATGGAGTATGTTGAAGGTACTGAGGCAAAG < 41bp 0.519943836006735 0.722326127522136 NA NA prediction 0.404764583030801 Functional Gain - MAST2 ENSG00000086015 CDS Human protein_coding chr1:46489646 chr1:46489645 synonymous SNV . 0 20 hm7G_associated_SNPs_36067 0 0 1 0 1 MAST2 chr1:46489652 5'GT 46489652 Upstream 8bp 33170 chr13 97999281 97999281 1 + C T COAD 97999282 + 97999262 97999302 41 CACCAAGCCAACCAAGCTGCGGTGGCCGCCCAGGCAGCCGC CACCAAGCCAACCAAGCTGTGGTGGCCGCCCAGGCAGCCGC < 41bp 0.500917562475425 0.703298529018561 NA NA prediction 0.404761933086272 Functional Gain - MBNL2 ENSG00000139793 CDS Human protein_coding chr13:97999282 chr13:97999281 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_36069 0 0 1 0 1 MBNL2 chr13:97999321 5'GT 97999321 Upstream 41bp 33171 chr14 105833691 105833691 1 + G A COAD 105833692 + 105833672 105833712 41 AGACAGCACCATGCAGGCCGGCCCCAAGGCCAAGTCCACGG AGACAGCACCATGCAGGCCAGCCCCAAGGCCAAGTCCACGG < 41bp 0.472439952516703 0.702380787439596 NA NA prediction 0.404761574879193 Functional Gain - PACS2 ENSG00000179364 CDS Human protein_coding chr14:105833692 chr14:105833691 nonsynonymous SNV 0.964 1 20 hm7G_associated_SNPs_36070 0 0 1 0 1 PACS2 chr14:105833712 5'GT 105833712 Upstream 22bp 33172 chr16 68283218 68283218 1 + G A UCEC 68283219 + 68283199 68283239 41 GTGATTTGGGTAACCAACTGGAAGCCAAGCTGGACAAGCCG GTGATTTGGGTAACCAACTAGAAGCCAAGCTGGACAAGCCG < 41bp 0.504851337916244 0.707229615614557 NA NA prediction 0.404756555396626 Functional Gain - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68283219 chr16:68283218 synonymous SNV . 0 20 hm7G_associated_SNPs_36071 0 0 1 0 1 PLA2G15 chr16:68283193 3'AG 68283193 Downstream 26bp 33173 chr12 22814054 22814054 1 + G T UCEC 22814055 + 22814035 22814075 41 AAGAGATGACTTGGATGAAGGAGATTCTTTCCAACCTGGGC AAGAGATGACTTGGATGAATGAGATTCTTTCCAACCTGGGC < 41bp 0.374487385364665 0.70237806927739 NA NA prediction 0.404756138554779 Functional Gain - ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22814055 chr12:22814054 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_36072 0 0 1 0 2 ETNK1 chr12:22813997 3'AG 22813997 Downstream 58bp 33174 chr12 22814054 22814054 1 + G T UCEC 22814055 + 22814035 22814075 41 AAGAGATGACTTGGATGAAGGAGATTCTTTCCAACCTGGGC AAGAGATGACTTGGATGAATGAGATTCTTTCCAACCTGGGC < 41bp 0.374487385364665 0.70237806927739 NA NA prediction 0.404756138554779 Functional Gain - ETNK1 ENSG00000139163 CDS Human protein_coding chr12:22814055 chr12:22814054 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_36072 0 0 1 0 2 ETNK1 chr12:22814139 5'GT 22814139 Upstream 86bp 33175 chr4 52926663 52926663 1 + G A SKCM 52926664 + 52926644 52926684 41 GGTGCAGGGACAACTCTTTGGGATCCTCACAGCAGCAGCCC GGTGCAGGGACAACTCTTTAGGATCCTCACAGCAGCAGCCC < 41bp 0.485521939978618 0.702377156572206 NA NA prediction 0.404754313144411 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52926664 chr4:52926663 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_36074 0 0 0 0 2 SPATA18 chr4:52926585 3'AG 52926585 Downstream 79bp 33176 chr4 52926663 52926663 1 + G A SKCM 52926664 + 52926644 52926684 41 GGTGCAGGGACAACTCTTTGGGATCCTCACAGCAGCAGCCC GGTGCAGGGACAACTCTTTAGGATCCTCACAGCAGCAGCCC < 41bp 0.485521939978618 0.702377156572206 NA NA prediction 0.404754313144411 Functional Gain - SPATA18 ENSG00000163071 CDS Human protein_coding chr4:52926664 chr4:52926663 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_36074 0 0 0 0 2 SPATA18 chr4:52926690 5'GT 52926690 Upstream 28bp 33177 chr8 39080726 39080726 1 + C T SKCM 39080727 + 39080707 39080747 41 ACGGAGACTGCCATGATCTCGATGCACGTTGTGAGAGTGTA ACGGAGACTGCCATGATCTTGATGCACGTTGTGAGAGTGTA < 41bp 0.525933017725996 0.728308019616393 NA NA prediction 0.404750003780793 Functional Gain - ADAM32 ENSG00000197140 CDS Human protein_coding chr8:39080727 chr8:39080726 synonymous SNV . 0 20 hm7G_associated_SNPs_36075 0 0 0 0 1 ADAM32 chr8:39080757 5'GT 39080757 Upstream 32bp 33178 chr5 176518737 176518737 1 + C T LGG 176518738 + 176518718 176518758 41 GAGCGTGGTGCCCTCGGACCGCGGCACATACACCTGCCTGG GAGCGTGGTGCCCTCGGACTGCGGCACATACACCTGCCTGG < 41bp 0.550756319587383 0.753127328517919 NA NA prediction 0.404742017861072 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176518738 chr5:176518737 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_36077 0 0 1 0 2 FGFR4 chr5:176518686 3'AG 176518686 Downstream 52bp 33179 chr5 176518737 176518737 1 + C T LGG 176518738 + 176518718 176518758 41 GAGCGTGGTGCCCTCGGACCGCGGCACATACACCTGCCTGG GAGCGTGGTGCCCTCGGACTGCGGCACATACACCTGCCTGG < 41bp 0.550756319587383 0.753127328517919 NA NA prediction 0.404742017861072 Functional Gain - FGFR4 ENSG00000160867 CDS Human protein_coding chr5:176518738 chr5:176518737 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_36077 0 0 1 0 2 FGFR4 chr5:176518809 5'GT 176518809 Upstream 73bp 33180 chr8 27279829 27279829 1 + C T GBM 27279830 + 27279810 27279850 41 CTCCCCACCAGCTCCGGAACGACTACATGCAGCGCTACGCC CTCCCCACCAGCTCCGGAATGACTACATGCAGCGCTACGCC < 41bp 0.515114285719842 0.717482527243401 NA NA prediction 0.404736483047118 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27279830 chr8:27279829 synonymous SNV . 0 20 hm7G_associated_SNPs_36078 0 0 1 0 2 PTK2B chr8:27279821 3'AG 27279821 Downstream 9bp 33181 chr8 27279829 27279829 1 + C T GBM 27279830 + 27279810 27279850 41 CTCCCCACCAGCTCCGGAACGACTACATGCAGCGCTACGCC CTCCCCACCAGCTCCGGAATGACTACATGCAGCGCTACGCC < 41bp 0.515114285719842 0.717482527243401 NA NA prediction 0.404736483047118 Functional Gain - PTK2B ENSG00000120899 CDS Human protein_coding chr8:27279830 chr8:27279829 synonymous SNV . 0 20 hm7G_associated_SNPs_36078 0 0 1 0 2 PTK2B chr8:27279900 5'GT 27279900 Upstream 72bp 33182 chr19 56539808 56539808 1 + C T COAD 56539809 + 56539789 56539829 41 TCCGTATTTGCGGAAAATTCGGGTGGATGTCAAAGGGATCT TCCGTATTTGCGGAAAATTTGGGTGGATGTCAAAGGGATCT < 41bp 0.502191155213591 0.704556199683159 NA NA prediction 0.404730088939135 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56539809 chr19:56539808 nonsynonymous SNV 0.017 3 20 hm7G_associated_SNPs_36080 0 0 0 0 1 NLRP5 chr19:56539875 5'GT 56539875 Upstream 68bp 33183 chrX 65480030 65480030 1 + G A UCEC 65480031 + 65480011 65480051 41 GCCAGCAACCCTGGGACATGGCTGATGCACTGCCATGTGAC GCCAGCAACCCTGGGACATAGCTGATGCACTGCCATGTGAC < 41bp 0.505241829143725 0.707606160154903 NA NA prediction 0.404728662022357 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65480031 chrX:65480030 stopgain 1.000 1 20 hm7G_associated_SNPs_36082 0 0 1 0 2 HEPH chrX:65479942 3'AG 65479942 Downstream 89bp 33184 chrX 65480030 65480030 1 + G A UCEC 65480031 + 65480011 65480051 41 GCCAGCAACCCTGGGACATGGCTGATGCACTGCCATGTGAC GCCAGCAACCCTGGGACATAGCTGATGCACTGCCATGTGAC < 41bp 0.505241829143725 0.707606160154903 NA NA prediction 0.404728662022357 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65480031 chrX:65480030 stopgain 1.000 1 20 hm7G_associated_SNPs_36082 0 0 1 0 2 HEPH chrX:65480104 5'GT 65480104 Upstream 75bp 33185 chr11 64026012 64026012 1 + C T STAD 64026013 + 64025993 64026033 41 TACTATGGGGCTGCCGCTGCGTGGAGCTGGACGTGTGGAAG TACTATGGGGCTGCCGCTGTGTGGAGCTGGACGTGTGGAAG < 41bp 0.514156498602443 0.716518327574841 NA NA prediction 0.404723657944796 Functional Gain - PLCB3 ENSG00000149782 CDS Human protein_coding chr11:64026013 chr11:64026012 synonymous SNV . 0 20 hm7G_associated_SNPs_36085 0 0 1 0 1 PLCB3 chr11:64025945 3'AG 64025945 Downstream 68bp 33186 chr9 34658610 34658610 1 + C T rs150157295 34658611 + 34658591 34658631 41 ACATACCCTGCCTCCTGGCCGTGCCAGCCCCACTTCCTGCT ACATACCCTGCCTCCTGGCTGTGCCAGCCCCACTTCCTGCT < 41bp 0.523793952953802 0.726154669496519 NA NA prediction 0.404721433085435 Functional Gain - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34658611 chr9:34658610 nonsynonymous SNV 0.705 2 20 hm7G_associated_SNPs_36086 0 0 1 0 2 IL11RA chr9:34658517 3'AG 34658517 Downstream 94bp 33187 chr9 34658610 34658610 1 + C T rs150157295 34658611 + 34658591 34658631 41 ACATACCCTGCCTCCTGGCCGTGCCAGCCCCACTTCCTGCT ACATACCCTGCCTCCTGGCTGTGCCAGCCCCACTTCCTGCT < 41bp 0.523793952953802 0.726154669496519 NA NA prediction 0.404721433085435 Functional Gain - IL11RA ENSG00000137070 CDS Human protein_coding chr9:34658611 chr9:34658610 nonsynonymous SNV 0.705 2 20 hm7G_associated_SNPs_36086 0 0 1 0 2 IL11RA chr9:34658680 5'GT 34658680 Upstream 71bp 33188 chr19 14024061 14024061 1 + C T UCEC 14024062 + 14024042 14024082 41 ATCAGACAGCAATTGAAAGCGCCAGACAAGCTGGAGACAGC ATCAGACAGCAATTGAAAGTGCCAGACAAGCTGGAGACAGC < 41bp 0.534819202555165 0.737179770855229 NA NA prediction 0.404721136600128 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14024062 chr19:14024061 synonymous SNV . 0 20 hm7G_associated_SNPs_36087 0 0 0 0 1 CC2D1A chr19:14024115 5'GT 14024115 Upstream 55bp 33189 chr2 27169788 27169788 1 + C T BRCA 27169789 + 27169769 27169809 41 TCCCTGCAGGCTCTCAGATCGATGACCATGTTCCAAAGCGA TCCCTGCAGGCTCTCAGATTGATGACCATGTTCCAAAGCGA < 41bp 0.510336823729372 0.712694536385268 NA NA prediction 0.404715425311792 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27169789 chr2:27169788 synonymous SNV . 0 20 hm7G_associated_SNPs_36089 0 0 0 0 1 DPYSL5 chr2:27169778 3'AG 27169778 Downstream 11bp 33190 chr3 140997320 140997320 1 + C T rs11556022 140997321 + 140997301 140997341 41 TGTACTGCAACATCCCCAGCGTGGCCGAGCGCAGCATGGAA TGTACTGCAACATCCCCAGTGTGGCCGAGCGCAGCATGGAA < 41bp 0.514655100550449 0.717012533021312 NA NA prediction 0.404714864941726 Functional Gain - PXYLP1 ENSG00000155893 CDS Human protein_coding chr3:140997321 chr3:140997320 synonymous SNV . 0 20 hm7G_associated_SNPs_36090 0 0 0 0 1 PXYLP1 chr3:140997342 5'GT 140997342 Upstream 23bp 33191 chr3 113672617 113672617 1 + C T SKCM 113672618 + 113672598 113672638 41 TACAATTTCTGATCGCCTCCGAATTCCTTGGCTTAGGGGAG TACAATTTCTGATCGCCTCTGAATTCCTTGGCTTAGGGGAG < 41bp 0.509237013455065 0.711593945805247 NA NA prediction 0.404713864700365 Functional Gain - ZDHHC23 ENSG00000184307 CDS Human protein_coding chr3:113672618 chr3:113672617 stopgain 1.000 1 20 hm7G_associated_SNPs_36092 0 0 0 0 1 ZDHHC23 chr3:113672547 3'AG 113672547 Downstream 71bp 33192 chr4 8220040 8220040 1 + G T THCA 8220041 + 8220021 8220061 41 ACCCCATCGACGATGCCATGGGTGGCCCTGTGATGCCCGGC ACCCCATCGACGATGCCATTGGTGGCCCTGTGATGCCCGGC < 41bp 0.331765164691746 0.702353684131273 NA NA prediction 0.404707368262546 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8220041 chr4:8220040 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_36095 0 0 1 0 2 SH3TC1 chr4:8219998 3'AG 8219998 Downstream 43bp 33193 chr4 8220040 8220040 1 + G T THCA 8220041 + 8220021 8220061 41 ACCCCATCGACGATGCCATGGGTGGCCCTGTGATGCCCGGC ACCCCATCGACGATGCCATTGGTGGCCCTGTGATGCCCGGC < 41bp 0.331765164691746 0.702353684131273 NA NA prediction 0.404707368262546 Functional Gain - SH3TC1 ENSG00000125089 CDS Human protein_coding chr4:8220041 chr4:8220040 nonsynonymous SNV 0.008 0 20 hm7G_associated_SNPs_36095 0 0 1 0 2 SH3TC1 chr4:8220074 5'GT 8220074 Upstream 35bp 33194 chr12 54930791 54930791 1 + C T COAD 54930792 + 54930772 54930812 41 GTGTCTGCTGCCCTCTTCACGCTCTACAACAAGAACATTGA GTGTCTGCTGCCCTCTTCATGCTCTACAACAAGAACATTGA < 41bp 0.531150223304702 0.733500276717235 NA NA prediction 0.404700106825068 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54930792 chr12:54930791 nonsynonymous SNV 0.845 4 20 hm7G_associated_SNPs_36099 0 0 0 0 2 NCKAP1L chr12:54930728 3'AG 54930728 Downstream 64bp 33195 chr12 54930791 54930791 1 + C T COAD 54930792 + 54930772 54930812 41 GTGTCTGCTGCCCTCTTCACGCTCTACAACAAGAACATTGA GTGTCTGCTGCCCTCTTCATGCTCTACAACAAGAACATTGA < 41bp 0.531150223304702 0.733500276717235 NA NA prediction 0.404700106825068 Functional Gain - NCKAP1L ENSG00000123338 CDS Human protein_coding chr12:54930792 chr12:54930791 nonsynonymous SNV 0.845 4 20 hm7G_associated_SNPs_36099 0 0 0 0 2 NCKAP1L chr12:54930837 5'GT 54930837 Upstream 47bp 33196 chr16 81929463 81929463 1 + C T COAD 81929464 + 81929444 81929484 41 GTCATCTACCATGGCTGGACGCGGACTACCAAGATCAAGTT GTCATCTACCATGGCTGGATGCGGACTACCAAGATCAAGTT < 41bp 0.490311904612306 0.702348839943932 NA NA prediction 0.404697679887863 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81929464 chr16:81929463 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_36100 0 0 1 0 2 PLCG2 chr16:81929412 3'AG 81929412 Downstream 52bp 33197 chr16 81929463 81929463 1 + C T COAD 81929464 + 81929444 81929484 41 GTCATCTACCATGGCTGGACGCGGACTACCAAGATCAAGTT GTCATCTACCATGGCTGGATGCGGACTACCAAGATCAAGTT < 41bp 0.490311904612306 0.702348839943932 NA NA prediction 0.404697679887863 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81929464 chr16:81929463 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_36100 0 0 1 0 2 PLCG2 chr16:81929532 5'GT 81929532 Upstream 70bp 33198 chr11 69934142 69934142 1 + C T rs200695647 69934143 + 69934123 69934163 41 GCTTCCGCAGGGAGGAGTACGAGGGCAACCTCCTGGAGGCG GCTTCCGCAGGGAGGAGTATGAGGGCAACCTCCTGGAGGCG < 41bp 0.550688554235828 0.753036688898604 NA NA prediction 0.404696269325553 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:69934143 chr11:69934142 synonymous SNV . 0 20 hm7G_associated_SNPs_36101 0 0 0 0 1 ANO1 chr11:69934190 5'GT 69934190 Upstream 49bp 33199 chr17 2909313 2909313 1 + C T CESC 2909314 + 2909294 2909334 41 GAGAACGCCTGCTGCAAGTCGGACAAGTTTGCAAAGCTGGA GAGAACGCCTGCTGCAAGTTGGACAAGTTTGCAAAGCTGGA < 41bp 0.537417710639266 0.739761992024529 NA NA prediction 0.404688562770526 Functional Gain - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2909314 chr17:2909313 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36103 0 0 0 0 2 RAP1GAP2 chr17:2909249 3'AG 2909249 Downstream 65bp 33200 chr17 2909313 2909313 1 + C T CESC 2909314 + 2909294 2909334 41 GAGAACGCCTGCTGCAAGTCGGACAAGTTTGCAAAGCTGGA GAGAACGCCTGCTGCAAGTTGGACAAGTTTGCAAAGCTGGA < 41bp 0.537417710639266 0.739761992024529 NA NA prediction 0.404688562770526 Functional Gain - RAP1GAP2 ENSG00000132359 CDS Human protein_coding chr17:2909314 chr17:2909313 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36103 0 0 0 0 2 RAP1GAP2 chr17:2909335 5'GT 2909335 Upstream 23bp 33201 chr1 87200774 87200774 1 + C T UCEC 87200775 + 87200755 87200795 41 TTCACAGGCCCATCACCTTCGCTGTCTGAATGACTTTGTAG TTCACAGGCCCATCACCTTTGCTGTCTGAATGACTTTGTAG < 41bp 0.510487119555073 0.712828507711845 NA NA prediction 0.404682776313544 Functional Gain - SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87200775 chr1:87200774 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_36105 0 0 1 0 2 SH3GLB1 chr1:87200762 3'AG 87200762 Downstream 13bp 33202 chr1 87200774 87200774 1 + C T UCEC 87200775 + 87200755 87200795 41 TTCACAGGCCCATCACCTTCGCTGTCTGAATGACTTTGTAG TTCACAGGCCCATCACCTTTGCTGTCTGAATGACTTTGTAG < 41bp 0.510487119555073 0.712828507711845 NA NA prediction 0.404682776313544 Functional Gain - SH3GLB1 ENSG00000097033 CDS Human protein_coding chr1:87200775 chr1:87200774 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_36105 0 0 1 0 2 SH3GLB1 chr1:87200862 5'GT 87200862 Upstream 89bp 33203 chr3 36422171 36422171 1 + G A SKCM 36422172 + 36422152 36422192 41 GCCCCCGCGAGGACGGCGTGGACGGGCTGCCCAAGGAGGCG GCCCCCGCGAGGACGGCGTAGACGGGCTGCCCAAGGAGGCG < 41bp 0.540352502284741 0.742693867673631 NA NA prediction 0.40468273077778 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36422172 chr3:36422171 synonymous SNV . 0 20 hm7G_associated_SNPs_36106 0 0 0 0 1 STAC chr3:36422246 5'GT 36422246 Upstream 76bp 33204 chr6 109578894 109578894 1 + C T UCEC 109578895 + 109578875 109578915 41 TGGCCTTGCCTCCCTGGAGCGACATGTCCTGCAGCTGGCCC TGGCCTTGCCTCCCTGGAGTGACATGTCCTGCAGCTGGCCC < 41bp 0.548253919331508 0.750594288996868 NA NA prediction 0.404680739330719 Functional Gain - C6orf183 ENSG00000243587;ENSG00000233908 intergenic Human other chr6:109578895 chr6:109578894 . . 0 20 hm7G_associated_SNPs_36107 0 0 1 0 1 C6orf183 chr6:109578977 5'GT 109578977 Upstream 84bp 33205 chr17 72322500 72322500 1 + C T COAD 72322501 + 72322481 72322521 41 CTGCAATCATGAAGGACAGCGGGGACTCCAAGGACCAGCAA CTGCAATCATGAAGGACAGTGGGGACTCCAAGGACCAGCAA < 41bp 0.505903054432386 0.708240412820429 NA NA prediction 0.404674716776085 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72322501 chr17:72322500 synonymous SNV . 0 20 hm7G_associated_SNPs_36111 0 0 0 0 1 KIF19 chr17:72322527 5'GT 72322527 Upstream 28bp 33206 chr16 31121765 31121765 1 + C T CESC 31121766 + 31121746 31121786 41 TTGGACAAGACGCTGACTTCGAGGCTTGGAATCCGCATGTT TTGGACAAGACGCTGACTTTGAGGCTTGGAATCCGCATGTT < 41bp 0.514048527007537 0.716383067910925 NA NA prediction 0.404669081806776 Functional Gain - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121766 chr16:31121765 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_36112 0 0 1 0 2 BCKDK chr16:31121722 3'AG 31121722 Downstream 44bp 33207 chr16 31121765 31121765 1 + C T CESC 31121766 + 31121746 31121786 41 TTGGACAAGACGCTGACTTCGAGGCTTGGAATCCGCATGTT TTGGACAAGACGCTGACTTTGAGGCTTGGAATCCGCATGTT < 41bp 0.514048527007537 0.716383067910925 NA NA prediction 0.404669081806776 Functional Gain - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31121766 chr16:31121765 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_36112 0 0 1 0 2 BCKDK chr16:31121820 5'GT 31121820 Upstream 56bp 33208 chr17 17997259 17997259 1 + C T LUAD 17997260 + 17997240 17997280 41 TCGGGTGATGCCCGTGTGGCGCTGATTGGATTTCCCTCTGT TCGGGTGATGCCCGTGTGGTGCTGATTGGATTTCCCTCTGT < 41bp 0.539163977812536 0.741497306624061 NA NA prediction 0.40466665762305 Functional Gain - DRG2 ENSG00000108591 CDS Human protein_coding chr17:17997260 chr17:17997259 nonsynonymous SNV 0.971 1 20 hm7G_associated_SNPs_36115 0 0 1 0 1 DRG2 chr17:17997287 5'GT 17997287 Upstream 29bp 33209 chrX 65475991 65475991 1 + G A SKCM 65475992 + 65475972 65476012 41 CCTTGGCTATCTGCCAAAAGGGCATCCTGGAGCCCCATGGA CCTTGGCTATCTGCCAAAAAGGCATCCTGGAGCCCCATGGA < 41bp 0.559628993726018 0.761961944241554 NA NA prediction 0.404665901031073 Functional Gain - HEPH ENSG00000089472 CDS Human protein_coding chrX:65475992 chrX:65475991 synonymous SNV . 0 20 hm7G_associated_SNPs_36116 0 0 1 0 1 HEPH chrX:65475947 3'AG 65475947 Downstream 45bp 33210 chr12 6954785 6954785 1 + G A STAD 6954786 + 6954766 6954806 41 AGGCCATCTGCACGGGCTCGGATGACGCTTCCTGCCGCTTG AGGCCATCTGCACGGGCTCAGATGACGCTTCCTGCCGCTTG < 41bp 0.494127732662977 0.702332898121903 NA NA prediction 0.404665796243807 Functional Gain - GNB3 ENSG00000111664 CDS Human protein_coding chr12:6954786 chr12:6954785 synonymous SNV . 0 20 hm7G_associated_SNPs_36117 0 0 1 0 1 GNB3 chr12:6954750 3'AG 6954750 Downstream 36bp 33211 chr21 47418338 47418338 1 + C T rs143755280 47418339 + 47418319 47418359 41 CGGGCAACAGGGGCGCTCCCGGGATAAACGTGAGTACGCCC CGGGCAACAGGGGCGCTCCTGGGATAAACGTGAGTACGCCC < 41bp 0.528927316602229 0.731259804544832 NA NA prediction 0.404664975885206 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47418339 chr21:47418338 synonymous SNV . 0 20 hm7G_associated_SNPs_36119 1 0 1 0 2 COL6A1 chr21:47418312 3'AG 47418312 Downstream 27bp 33212 chr21 47418338 47418338 1 + C T rs143755280 47418339 + 47418319 47418359 41 CGGGCAACAGGGGCGCTCCCGGGATAAACGTGAGTACGCCC CGGGCAACAGGGGCGCTCCTGGGATAAACGTGAGTACGCCC < 41bp 0.528927316602229 0.731259804544832 NA NA prediction 0.404664975885206 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47418339 chr21:47418338 synonymous SNV . 0 20 hm7G_associated_SNPs_36119 1 0 1 0 2 COL6A1 chr21:47418347 5'GT 47418347 Upstream 10bp 33213 chr14 58790255 58790255 1 + C T PRAD 58790256 + 58790236 58790276 41 AGAGGAAGATGAAGACAAGCGCCGTCTCAATGATGAATTAC AGAGGAAGATGAAGACAAGTGCCGTCTCAATGATGAATTAC < 41bp 0.524852520793788 0.727184991207998 NA NA prediction 0.40466494082842 Functional Gain - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58790256 chr14:58790255 nonsynonymous SNV 0.966 4 20 hm7G_associated_SNPs_36120 0 0 1 0 2 ARID4A chr14:58790203 3'AG 58790203 Downstream 53bp 33214 chr14 58790255 58790255 1 + C T PRAD 58790256 + 58790236 58790276 41 AGAGGAAGATGAAGACAAGCGCCGTCTCAATGATGAATTAC AGAGGAAGATGAAGACAAGTGCCGTCTCAATGATGAATTAC < 41bp 0.524852520793788 0.727184991207998 NA NA prediction 0.40466494082842 Functional Gain - ARID4A ENSG00000032219 CDS Human protein_coding chr14:58790256 chr14:58790255 nonsynonymous SNV 0.966 4 20 hm7G_associated_SNPs_36120 0 0 1 0 2 ARID4A chr14:58790335 5'GT 58790335 Upstream 81bp 33215 chr16 3705380 3705380 1 + G A rs8176927 3705381 + 3705361 3705401 41 TGTGCTCTCCCAGGATGAGGGGCATGAAGCTGCTGGGGGCG TGTGCTCTCCCAGGATGAGAGGCATGAAGCTGCTGGGGGCG < 41bp 0.580503703798874 0.782835981073737 NA NA prediction 0.404664554549725 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3705381 chr16:3705380 synonymous SNV . 0 20 hm7G_associated_SNPs_36121 0 0 0 0 1 DNASE1 chr16:3705374 3'AG 3705374 Downstream 7bp 33216 chr6 152420071 152420071 1 + G T UCEC 152420072 + 152420052 152420092 41 AAAAGTATTACATCACGGGGGAGGCAGAGGGTTTCCCTGCC AAAAGTATTACATCACGGGTGAGGCAGAGGGTTTCCCTGCC < 41bp 0.428965299174017 0.702331005774004 NA NA prediction 0.404662011548008 Functional Gain - ESR1 ENSG00000091831 CDS Human protein_coding chr6:152420072 chr6:152420071 synonymous SNV . 0 20 hm7G_associated_SNPs_36123 0 0 0 0 1 ESR1 chr6:152420011 3'AG 152420011 Downstream 61bp 33217 chr5 133482002 133482002 1 + C T GBM 133482003 + 133481983 133482023 41 ACAGTGCTCTAGGCTGCCCCGGGTCCCCAGCTCCCCAGGAC ACAGTGCTCTAGGCTGCCCTGGGTCCCCAGCTCCCCAGGAC < 41bp 0.498232704089343 0.702330952658709 NA NA prediction 0.404661905317417 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133482003 chr5:133482002 synonymous SNV . 0 20 hm7G_associated_SNPs_36124 0 0 1 0 1 TCF7 chr5:133481915 3'AG 133481915 Downstream 88bp 33218 chr12 7288049 7288049 1 + C T rs149152741 7288050 + 7288030 7288070 41 TGCGGGTGGAAGCCATTGACGGTGACTGCTCCCCCCAGTAC TGCGGGTGGAAGCCATTGATGGTGACTGCTCCCCCCAGTAC < 41bp 0.565762943126236 0.768092378265978 NA NA prediction 0.404658870279484 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7288050 chr12:7288049 synonymous SNV . 0 20 hm7G_associated_SNPs_36126 0 0 1 0 1 CLSTN3 chr12:7288131 5'GT 7288131 Upstream 83bp 33219 chr17 17075143 17075143 1 + C T UCEC 17075144 + 17075124 17075164 41 ACTTCGAGAAGAGAAAGACCGCCTCCTAGCCGAGGAGACAG ACTTCGAGAAGAGAAAGACTGCCTCCTAGCCGAGGAGACAG < 41bp 0.51904157663934 0.721370742183738 NA NA prediction 0.404658331088795 Functional Gain - MPRIP ENSG00000133030 CDS Human protein_coding chr17:17075144 chr17:17075143 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_36128 0 0 1 0 1 MPRIP chr17:17075179 5'GT 17075179 Upstream 37bp 33220 chr19 41622409 41622409 1 + G A rs145103345 41622410 + 41622390 41622430 41 GTGCACCTGGGACCCAGGCGGGTGGTGGTCCTCAGCGGGTA GTGCACCTGGGACCCAGGCAGGTGGTGGTCCTCAGCGGGTA < 41bp 0.595824056976731 0.79815169053919 NA NA prediction 0.404655267124918 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41622410 chr19:41622409 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_36129 0 0 0 0 1 CYP2F1 chr19:41622360 3'AG 41622360 Downstream 50bp 33221 chr20 3730638 3730638 1 + C T LIHC 3730639 + 3730619 3730659 41 GCCCTTATGGCGCGGTGGGCGTGGACCTGGCCTTCGAGCAG GCCCTTATGGCGCGGTGGGTGTGGACCTGGCCTTCGAGCAG < 41bp 0.502675406459313 0.705002602765539 NA NA prediction 0.404654392612452 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3730639 chr20:3730638 synonymous SNV . 0 20 hm7G_associated_SNPs_36130 0 0 0 0 1 HSPA12B chr20:3730616 3'AG 3730616 Downstream 23bp 33222 chr1 146757043 146757043 1 + C T BRCA 146757044 + 146757024 146757064 41 GGGATCTACCAAAAGGAAGCGGGTTCTGAGTCCAGAAGAGC GGGATCTACCAAAAGGAAGTGGGTTCTGAGTCCAGAAGAGC < 41bp 0.488917177273689 0.702325942540336 NA NA prediction 0.404651885080672 Functional Gain - CHD1L ENSG00000131778 CDS Human protein_coding chr1:146757044 chr1:146757043 nonsynonymous SNV 0.628 3 20 hm7G_associated_SNPs_36131 0 0 1 2 1 CHD1L chr1:146757001 3'AG 146757001 Downstream 43bp 33223 chr8 144803812 144803812 1 + C T COAD 144803813 + 144803793 144803833 41 GGGGAAAGGCCCCCTGGGGCGAAGGAAGCGCCCCCCTTGAC GGGGAAAGGCCCCCTGGGGTGAAGGAAGCGCCCCCCTTGAC < 41bp 0.496696085382325 0.702325894942327 NA NA prediction 0.404651789884654 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144803813 chr8:144803812 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36132 0 0 0 0 1 MAPK15 chr8:144803843 5'GT 144803843 Upstream 32bp 33224 chr11 10515087 10515087 1 + C T rs76407515 10515088 + 10515068 10515108 41 TGGACTCACTGGATGTCCACGCGGTGAGTGAGCTTCTGCTC TGGACTCACTGGATGTCCATGCGGTGAGTGAGCTTCTGCTC < 41bp 0.533899498300114 0.736225025473187 NA NA prediction 0.404651054346146 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10515088 chr11:10515087 synonymous SNV . 0 20 hm7G_associated_SNPs_36134 1 0 0 2 1 AMPD3 chr11:10515090 5'GT 10515090 Upstream 4bp 33225 chr5 1032326 1032326 1 + G A SKCM 1032327 + 1032307 1032347 41 AGGACCAGTGTCCCCTACAGGGTGAGTGCAGCTCCCGCAGC AGGACCAGTGTCCCCTACAAGGTGAGTGCAGCTCCCGCAGC < 41bp 0.489932089678373 0.702324868473759 NA NA prediction 0.404649736947519 Functional Gain - NKD2 ENSG00000145506 CDS Human protein_coding chr5:1032327 chr5:1032326 synonymous SNV . 0 20 hm7G_associated_SNPs_36135 0 0 0 0 1 NKD2 chr5:1032267 3'AG 1032267 Downstream 60bp 33226 chrX 129155104 129155104 1 + C T ACC 129155105 + 129155085 129155125 41 GTCCCAGTCTCCAGGAAAACGAGCCGACAGCCACGAGGAAG GTCCCAGTCTCCAGGAAAATGAGCCGACAGCCACGAGGAAG < 41bp 0.525691179278801 0.728014704600972 NA NA prediction 0.404647050644341 Functional Gain - BCORL1 ENSG00000085185 CDS Human protein_coding chrX:129155105 chrX:129155104 stopgain 0.954 0 20 hm7G_associated_SNPs_36136 0 0 0 0 1 BCORL1 chrX:129155125 5'GT 129155125 Upstream 22bp 33227 chr13 113974716 113974716 1 + C T UCEC 113974717 + 113974697 113974737 41 CCTCGGCCAGCGGGAGCTGCGGCGCCCACCTGGTGACTCTG CCTCGGCCAGCGGGAGCTGTGGCGCCCACCTGGTGACTCTG < 41bp 0.535357113019477 0.737680110588614 NA NA prediction 0.404645995138273 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113974717 chr13:113974716 synonymous SNV . 0 20 hm7G_associated_SNPs_36137 0 0 1 0 2 LAMP1 chr13:113974660 3'AG 113974660 Downstream 57bp 33228 chr13 113974716 113974716 1 + C T UCEC 113974717 + 113974697 113974737 41 CCTCGGCCAGCGGGAGCTGCGGCGCCCACCTGGTGACTCTG CCTCGGCCAGCGGGAGCTGTGGCGCCCACCTGGTGACTCTG < 41bp 0.535357113019477 0.737680110588614 NA NA prediction 0.404645995138273 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113974717 chr13:113974716 synonymous SNV . 0 20 hm7G_associated_SNPs_36137 0 0 1 0 2 LAMP1 chr13:113974785 5'GT 113974785 Upstream 70bp 33229 chr17 43176870 43176870 1 + C T STAD 43176871 + 43176851 43176891 41 GCGCACCATGAAGCTCTACCGACTGCCAGAGGCCAGTGCTG GCGCACCATGAAGCTCTACTGACTGCCAGAGGCCAGTGCTG < 41bp 0.543078033865533 0.745399706465256 NA NA prediction 0.404643345199445 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43176871 chr17:43176870 stopgain 1.000 1 20 hm7G_associated_SNPs_36141 0 0 1 1 1 NMT1 chr17:43176773 3'AG 43176773 Downstream 98bp 33230 chr19 17662616 17662616 1 + G A rs76629753 17662617 + 17662597 17662637 41 GAGGAAACTGAGGCTGAGCGGGAAGGAGGGGCTTGTCCCAG GAGGAAACTGAGGCTGAGCAGGAAGGAGGGGCTTGTCCCAG < 41bp 0.555471335410061 0.757789124155105 NA NA prediction 0.404635577490089 Functional Gain - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17662617 chr19:17662616 nonsynonymous SNV 0.018 0 20 hm7G_associated_SNPs_36142 0 0 0 0 1 FAM129C chr19:17662595 3'AG 17662595 Downstream 22bp 33231 chr17 61564046 61564046 1 + G T rs35553988 61564047 + 61564027 61564067 41 AGGTTCAGGACCTAGAACGGGCAGCACTGCCTGCCCAGGAG AGGTTCAGGACCTAGAACGTGCAGCACTGCCTGCCCAGGAG < 41bp 0.35043642828453 0.702317776717955 NA NA prediction 0.40463555343591 Functional Gain - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61564047 chr17:61564046 synonymous SNV . 0 20 hm7G_associated_SNPs_36143 0 0 0 0 1 ACE chr17:61564076 5'GT 61564076 Upstream 31bp 33232 chr10 135026241 135026241 1 + C T SKCM 135026242 + 135026222 135026262 41 CTTCCCCTGGAGGCTGCCCCGAGGCAACGGGCTGGTGCTGC CTTCCCCTGGAGGCTGCCCTGAGGCAACGGGCTGGTGCTGC < 41bp 0.540546583316642 0.742864320819331 NA NA prediction 0.404635475005378 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135026242 chr10:135026241 stopgain 0.985 0 20 hm7G_associated_SNPs_36144 0 0 0 0 1 KNDC1 chr10:135026220 3'AG 135026220 Downstream 22bp 33233 chr15 45457064 45457064 1 + C T PRAD 45457065 + 45457045 45457085 41 GCTCATCAACAGGCAGGACCGGACTCACTTCTCCCACCATT GCTCATCAACAGGCAGGACTGGACTCACTTCTCCCACCATT < 41bp 0.537101976976344 0.739419255974076 NA NA prediction 0.404634557995464 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45457065 chr15:45457064 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_36145 0 0 0 0 1 DUOX1 chr15:45456977 3'AG 45456977 Downstream 88bp 33234 chr9 97563076 97563076 1 + C T rs34557833 97563077 + 97563057 97563097 41 TCACATGGAATACCCCTGCCGCTTCCAGAATGCTTCTGCCA TCACATGGAATACCCCTGCTGCTTCCAGAATGCTTCTGCCA < 41bp 0.535479561415557 0.737795801881164 NA NA prediction 0.404632480931213 Functional Gain - C9orf3 ENSG00000148120 CDS Human protein_coding chr9:97563077 chr9:97563076 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_36146 0 0 0 0 1 C9orf3 chr9:97563039 3'AG 97563039 Downstream 38bp 33235 chr2 27164868 27164868 1 + C T UCEC 27164869 + 27164849 27164889 41 TGGCCGTTACCAGTTCCAACGCAGCTAAGCTTCTGAACCTG TGGCCGTTACCAGTTCCAATGCAGCTAAGCTTCTGAACCTG < 41bp 0.546188462990681 0.748504613359703 NA NA prediction 0.404632300738042 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27164869 chr2:27164868 synonymous SNV . 0 20 hm7G_associated_SNPs_36147 0 0 0 0 2 DPYSL5 chr2:27164818 3'AG 27164818 Downstream 51bp 33236 chr2 27164868 27164868 1 + C T UCEC 27164869 + 27164849 27164889 41 TGGCCGTTACCAGTTCCAACGCAGCTAAGCTTCTGAACCTG TGGCCGTTACCAGTTCCAATGCAGCTAAGCTTCTGAACCTG < 41bp 0.546188462990681 0.748504613359703 NA NA prediction 0.404632300738042 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27164869 chr2:27164868 synonymous SNV . 0 20 hm7G_associated_SNPs_36147 0 0 0 0 2 DPYSL5 chr2:27164960 5'GT 27164960 Upstream 93bp 33237 chr19 14562725 14562725 1 + G A UCEC 14562726 + 14562706 14562746 41 CCCTCAATGGGGGGACCTGGGACCCCAGACAGCCGCCCCCC CCCTCAATGGGGGGACCTGAGACCCCAGACAGCCGCCCCCC < 41bp 0.575726493651871 0.778042633109614 NA NA prediction 0.404632278915486 Functional Gain - PKN1 ENSG00000123143 CDS Human protein_coding chr19:14562726 chr19:14562725 nonsynonymous SNV 0.437 2 20 hm7G_associated_SNPs_36148 0 0 1 0 1 PKN1 chr19:14562641 3'AG 14562641 Downstream 85bp 33238 chr11 2604774 2604774 1 + C T UCEC 2604775 + 2604755 2604795 41 TCCTTCTTTGCGCTCCCAGCGGTAGGTGCCCCGTGGGTGCG TCCTTCTTTGCGCTCCCAGTGGTAGGTGCCCCGTGGGTGCG < 41bp 0.518127163373829 0.720443280453363 NA NA prediction 0.404632234159069 Functional Gain - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2604775 chr11:2604774 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_36149 3 0 0 0 1 KCNQ1 chr11:2604775 5'GT 2604775 Upstream 2bp 33239 chr2 27291583 27291583 1 + C T LAML 27291584 + 27291564 27291604 41 TCTGCTAGGGACTGGAGCTCGGATGCCCTGCATCAAGACTC TCTGCTAGGGACTGGAGCTTGGATGCCCTGCATCAAGACTC < 41bp 0.549877782089129 0.752191504251305 NA NA prediction 0.404627444324352 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27291584 chr2:27291583 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_36151 0 0 0 0 2 AGBL5 chr2:27291500 3'AG 27291500 Downstream 84bp 33240 chr2 27291583 27291583 1 + C T LAML 27291584 + 27291564 27291604 41 TCTGCTAGGGACTGGAGCTCGGATGCCCTGCATCAAGACTC TCTGCTAGGGACTGGAGCTTGGATGCCCTGCATCAAGACTC < 41bp 0.549877782089129 0.752191504251305 NA NA prediction 0.404627444324352 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27291584 chr2:27291583 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_36151 0 0 0 0 2 AGBL5 chr2:27291612 5'GT 27291612 Upstream 30bp 33241 chr12 132239012 132239012 1 + C T UCEC 132239013 + 132238993 132239033 41 CCAGGAACGGCCTGAAGTTCGAGACCAGTGTTCGTGCCAAG CCAGGAACGGCCTGAAGTTTGAGACCAGTGTTCGTGCCAAG < 41bp 0.554204034769077 0.756513860523338 NA NA prediction 0.404619651508524 Functional Gain - SFSWAP ENSG00000061936 CDS Human protein_coding chr12:132239013 chr12:132239012 synonymous SNV . 0 20 hm7G_associated_SNPs_36153 0 0 1 0 1 SFSWAP chr12:132238913 3'AG 132238913 Downstream 100bp 33242 chr20 25203487 25203487 1 + C T COAD 25203488 + 25203468 25203508 41 CCCCAGCGGCAAGCCTGCACGAGCTGTGTGCTGCCAGAGTG CCCCAGCGGCAAGCCTGCATGAGCTGTGTGCTGCCAGAGTG < 41bp 0.506095598800604 0.708404337066084 NA NA prediction 0.40461747653096 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25203488 chr20:25203487 synonymous SNV . 0 20 hm7G_associated_SNPs_36154 0 0 1 0 1 ENTPD6 chr20:25203474 3'AG 25203474 Downstream 14bp 33243 chr10 88422152 88422152 1 + G A ESCA 88422153 + 88422133 88422173 41 CTCAGCTGGATCTCCATACGGAGGCGCCAGGAGTCCCTGGG CTCAGCTGGATCTCCATACAGAGGCGCCAGGAGTCCCTGGG < 41bp 0.536430033750217 0.738738483756956 NA NA prediction 0.404616900013478 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88422153 chr10:88422152 nonsynonymous SNV 0.845 0 20 hm7G_associated_SNPs_36155 0 0 0 0 1 OPN4 chr10:88422189 5'GT 88422189 Upstream 38bp 33244 chr8 69046311 69046311 1 + C T SKCM 69046312 + 69046292 69046332 41 AGATAGTGAGACACAGCTCCGTAGAGACATGGTTTTCTGCC AGATAGTGAGACACAGCTCTGTAGAGACATGGTTTTCTGCC < 41bp 0.501492384965979 0.703797219269769 NA NA prediction 0.404609668607581 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:69046312 chr8:69046311 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_36156 0 0 0 0 1 PREX2 chr8:69046294 3'AG 69046294 Downstream 18bp 33245 chrX 2638427 2638427 1 + C T SARC 2638428 + 2638408 2638448 41 CCACCGAACCCACCCAAACCGATGCCAAATCCAAACCCCAA CCACCGAACCCACCCAAACTGATGCCAAATCCAAACCCCAA < 41bp 0.526012552443887 0.728315879472266 NA NA prediction 0.404606654056758 Functional Gain - CD99 ENSG00000002586 CDS Human protein_coding chrX:2638428 chrX:2638427 nonsynonymous SNV 0.165 3 20 hm7G_associated_SNPs_36158 0 0 1 0 2 CD99 chrX:2638397 3'AG 2638397 Downstream 31bp 33246 chrX 2638427 2638427 1 + C T SARC 2638428 + 2638408 2638448 41 CCACCGAACCCACCCAAACCGATGCCAAATCCAAACCCCAA CCACCGAACCCACCCAAACTGATGCCAAATCCAAACCCCAA < 41bp 0.526012552443887 0.728315879472266 NA NA prediction 0.404606654056758 Functional Gain - CD99 ENSG00000002586 CDS Human protein_coding chrX:2638428 chrX:2638427 nonsynonymous SNV 0.165 3 20 hm7G_associated_SNPs_36158 0 0 1 0 2 CD99 chrX:2638465 5'GT 2638465 Upstream 39bp 33247 chr10 105194696 105194696 1 + C T UCEC 105194697 + 105194677 105194717 41 AGTGACTCCTACTCCGAGACGCCCCTGGAAGACTTCGTCCC AGTGACTCCTACTCCGAGATGCCCCTGGAAGACTTCGTCCC < 41bp 0.530762037434182 0.733062902587316 NA NA prediction 0.404601730306267 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105194697 chr10:105194696 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_36160 0 0 1 0 1 PDCD11 chr10:105194732 5'GT 105194732 Upstream 37bp 33248 chr5 55083805 55083805 1 + G T SARC 55083806 + 55083786 55083826 41 TGGTCAACCAGATTTATTTGGAAGCCAGAAAATTTTCTTTT TGGTCAACCAGATTTATTTTGAAGCCAGAAAATTTTCTTTT < 41bp 0.386904489234461 0.702300378084105 NA NA prediction 0.404600756168209 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55083806 chr5:55083805 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36162 0 0 0 0 1 DDX4 chr5:55083828 5'GT 55083828 Upstream 24bp 33249 chr1 155013046 155013046 1 + C T rs141235792 155013047 + 155013027 155013067 41 TGCAGATCAACAACACCCGCGCAGCTTGGCGCATCTCCACA TGCAGATCAACAACACCCGTGCAGCTTGGCGCATCTCCACA < 41bp 0.526061123941547 0.728357047560202 NA NA prediction 0.404591847237312 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155013047 chr1:155013046 synonymous SNV . 0 20 hm7G_associated_SNPs_36166 0 0 0 0 2 DCST1 chr1:155012961 3'AG 155012961 Downstream 86bp 33250 chr1 155013046 155013046 1 + C T rs141235792 155013047 + 155013027 155013067 41 TGCAGATCAACAACACCCGCGCAGCTTGGCGCATCTCCACA TGCAGATCAACAACACCCGTGCAGCTTGGCGCATCTCCACA < 41bp 0.526061123941547 0.728357047560202 NA NA prediction 0.404591847237312 Functional Gain - DCST1 ENSG00000163357 CDS Human protein_coding chr1:155013047 chr1:155013046 synonymous SNV . 0 20 hm7G_associated_SNPs_36166 0 0 0 0 2 DCST1 chr1:155013100 5'GT 155013100 Upstream 55bp 33251 chr19 42383127 42383127 1 + C T UCEC 42383128 + 42383108 42383148 41 TGGTGAGCCTGGGGGAAGACGCCCACTTCCAATGCCCGCAC TGGTGAGCCTGGGGGAAGATGCCCACTTCCAATGCCCGCAC < 41bp 0.520551769946282 0.722847612215738 NA NA prediction 0.404591684538912 Functional Gain - CD79A ENSG00000105369 CDS Human protein_coding chr19:42383128 chr19:42383127 synonymous SNV . 0 20 hm7G_associated_SNPs_36167 0 0 0 0 1 CD79A chr19:42383060 3'AG 42383060 Downstream 68bp 33252 chr10 95335855 95335855 1 + C T SKCM 95335856 + 95335836 95335876 41 TTTTGTAACTAGGAAATTTCGATTTGCACACTGATTTGGCC TTTTGTAACTAGGAAATTTTGATTTGCACACTGATTTGGCC < 41bp 0.513298523017776 0.715593539375994 NA NA prediction 0.404590032716436 Functional Gain - FFAR4 ENSG00000186188 CDS Human protein_coding chr10:95335856 chr10:95335855 nonsynonymous SNV 0.106 0 20 hm7G_associated_SNPs_36168 0 0 0 0 1 FFAR4 chr10:95335848 3'AG 95335848 Downstream 8bp 33253 chr8 144463858 144463858 1 + C T SKCM 144463859 + 144463839 144463879 41 GAGACTCGCCTGTCCTCATCGCTGCCGTCATTCCAGGGAGC GAGACTCGCCTGTCCTCATTGCTGCCGTCATTCCAGGGAGC < 41bp 0.515044372237076 0.717336216877151 NA NA prediction 0.404583689280151 Functional Gain - RHPN1 ENSG00000158106 CDS Human protein_coding chr8:144463859 chr8:144463858 synonymous SNV . 0 20 hm7G_associated_SNPs_36172 0 0 0 0 1 RHPN1 chr8:144463888 5'GT 144463888 Upstream 31bp 33254 chr6 7862665 7862665 1 + C T UCEC 7862666 + 7862646 7862686 41 CAGGTCAGCCTCCAGCCGGCGCCGACAACAGAGTCGTAATC CAGGTCAGCCTCCAGCCGGTGCCGACAACAGAGTCGTAATC < 41bp 0.544602190939032 0.746893885973087 NA NA prediction 0.404583390068111 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7862666 chr6:7862665 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_36173 0 0 0 0 1 BMP6 chr6:7862731 5'GT 7862731 Upstream 67bp 33255 chr22 25282669 25282669 1 + G A OV 25282670 + 25282650 25282690 41 CCTGGGCCACTACCAGTTCGGGATGACGGAAACAGAAAGGA CCTGGGCCACTACCAGTTCAGGATGACGGAAACAGAAAGGA < 41bp 0.483795702925973 0.702291389620746 NA NA prediction 0.404582779241492 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25282670 chr22:25282669 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_36174 0 0 0 0 1 SGSM1 chr22:25282695 5'GT 25282695 Upstream 27bp 33256 chr19 7673100 7673100 1 + C T UCEC 7673101 + 7673081 7673121 41 GACCTGGCCAGTGGGGCCGCGCTGGCCGCCACCATCCACTG GACCTGGCCAGTGGGGCCGTGCTGGCCGCCACCATCCACTG < 41bp 0.529317632626211 0.731608776636351 NA NA prediction 0.404582288020281 Functional Gain - CAMSAP3 ENSG00000076826 CDS Human protein_coding chr19:7673101 chr19:7673100 nonsynonymous SNV 0.442 4 20 hm7G_associated_SNPs_36175 0 0 1 0 1 CAMSAP3 chr19:7673012 3'AG 7673012 Downstream 89bp 33257 chr7 100187889 100187889 1 + C T UCEC 100187890 + 100187870 100187910 41 AAGTGTGCGATGGGGAAGGCGTGTGGAGACGCATCTGTCGC AAGTGTGCGATGGGGAAGGTGTGTGGAGACGCATCTGTCGC < 41bp 0.526974454467731 0.729264918792963 NA NA prediction 0.404580928650464 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187890 chr7:100187889 synonymous SNV . 0 20 hm7G_associated_SNPs_36176 0 0 0 0 2 FBXO24 chr7:100187797 3'AG 100187797 Downstream 93bp 33258 chr7 100187889 100187889 1 + C T UCEC 100187890 + 100187870 100187910 41 AAGTGTGCGATGGGGAAGGCGTGTGGAGACGCATCTGTCGC AAGTGTGCGATGGGGAAGGTGTGTGGAGACGCATCTGTCGC < 41bp 0.526974454467731 0.729264918792963 NA NA prediction 0.404580928650464 Functional Gain - FBXO24 ENSG00000106336 CDS Human protein_coding chr7:100187890 chr7:100187889 synonymous SNV . 0 20 hm7G_associated_SNPs_36176 0 0 0 0 2 FBXO24 chr7:100187980 5'GT 100187980 Upstream 92bp 33259 chrX 1748721 1748721 1 + G A rs192710293 1748722 + 1748702 1748742 41 TTTGCATGCCAGGTCCGAGGGCGAGCGGCTACAGTTCATGC TTTGCATGCCAGGTCCGAGAGCGAGCGGCTACAGTTCATGC < 41bp 0.567465126982977 0.76975452784924 NA NA prediction 0.404578801732525 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1748722 chrX:1748721 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_36177 0 0 0 0 1 ASMT chrX:1748714 3'AG 1748714 Downstream 8bp 33260 chr14 24642164 24642164 1 + C T PRAD 24642165 + 24642145 24642185 41 CCCCCGCAGCCCGGCCTGCCGCGGCCCCGCTTCTCCCTCTA CCCCCGCAGCCCGGCCTGCTGCGGCCCCGCTTCTCCCTCTA < 41bp 0.536799376644294 0.739085587848129 NA NA prediction 0.404572422407672 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642165 chr14:24642164 nonsynonymous SNV 0.178 4 20 hm7G_associated_SNPs_36179 0 0 0 0 2 REC8 chr14:24642108 3'AG 24642108 Downstream 57bp 33261 chr14 24642164 24642164 1 + C T PRAD 24642165 + 24642145 24642185 41 CCCCCGCAGCCCGGCCTGCCGCGGCCCCGCTTCTCCCTCTA CCCCCGCAGCCCGGCCTGCTGCGGCCCCGCTTCTCCCTCTA < 41bp 0.536799376644294 0.739085587848129 NA NA prediction 0.404572422407672 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642165 chr14:24642164 nonsynonymous SNV 0.178 4 20 hm7G_associated_SNPs_36179 0 0 0 0 2 REC8 chr14:24642250 5'GT 24642250 Upstream 87bp 33262 chr11 125453429 125453429 1 + C T UCEC 125453430 + 125453410 125453450 41 TTTTAGTCTCTTCCAGTTGCGCCTCTTCTCCTTGGTGGTCT TTTTAGTCTCTTCCAGTTGTGCCTCTTCTCCTTGGTGGTCT < 41bp 0.515684370547165 0.717968606378249 NA NA prediction 0.404568471662168 Functional Gain - EI24 ENSG00000149547 CDS Human protein_coding chr11:125453430 chr11:125453429 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_36180 0 0 1 0 1 EI24 chr11:125453416 3'AG 125453416 Downstream 14bp 33263 chr12 14589105 14589105 1 + C T COAD 14589106 + 14589086 14589126 41 TGTACAGTCTAAACGTCGTCGATATATGGAAGAAGAATATG TGTACAGTCTAAACGTCGTTGATATATGGAAGAAGAATATG < 41bp 0.514908984556273 0.717191555439155 NA NA prediction 0.404565141765765 Functional Gain - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14589106 chr12:14589105 stopgain 0.997 1 20 hm7G_associated_SNPs_36181 0 0 1 0 2 ATF7IP chr12:14589040 3'AG 14589040 Downstream 66bp 33264 chr12 14589105 14589105 1 + C T COAD 14589106 + 14589086 14589126 41 TGTACAGTCTAAACGTCGTCGATATATGGAAGAAGAATATG TGTACAGTCTAAACGTCGTTGATATATGGAAGAAGAATATG < 41bp 0.514908984556273 0.717191555439155 NA NA prediction 0.404565141765765 Functional Gain - ATF7IP ENSG00000171681 CDS Human protein_coding chr12:14589106 chr12:14589105 stopgain 0.997 1 20 hm7G_associated_SNPs_36181 0 0 1 0 2 ATF7IP chr12:14589185 5'GT 14589185 Upstream 81bp 33265 chr1 227968287 227968287 1 + C T UCEC 227968288 + 227968268 227968308 41 GTGAGCTGGAGAGACAAGACGAAGCCCTGGATGGCGTTGCA GTGAGCTGGAGAGACAAGATGAAGCCCTGGATGGCGTTGCA < 41bp 0.513212109669319 0.715493720400504 NA NA prediction 0.404563221462368 Functional Gain - SNAP47 ENSG00000143740 CDS Human protein_coding chr1:227968288 chr1:227968287 synonymous SNV . 0 20 hm7G_associated_SNPs_36182 0 0 1 0 1 SNAP47 chr1:227968228 3'AG 227968228 Downstream 60bp 33266 chr22 32241212 32241212 1 + C T SKCM 32241213 + 32241193 32241233 41 CAGGCGGCATCGCTCGGATCGCATGATGCGGGTAAGGGCTC CAGGCGGCATCGCTCGGATTGCATGATGCGGGTAAGGGCTC < 41bp 0.497974443122824 0.702281000117103 NA NA prediction 0.404562000234206 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32241213 chr22:32241212 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_36183 0 0 0 0 1 DEPDC5 chr22:32241223 5'GT 32241223 Upstream 12bp 33267 chr20 44641960 44641960 1 + C T CESC 44641961 + 44641941 44641981 41 CAGCCCACGGCTCCCCCGACGGTCTGCCCCACCGGACCCCC CAGCCCACGGCTCCCCCGATGGTCTGCCCCACCGGACCCCC < 41bp 0.497526099860631 0.702280408517874 NA NA prediction 0.404560817035749 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641961 chr20:44641960 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_36184 0 0 0 0 1 MMP9 chr20:44641894 3'AG 44641894 Downstream 67bp 33268 chr17 7350398 7350398 1 + C T UCEC 7350399 + 7350379 7350419 41 ACGTGGCTCTGGACATTAGCGTCGTGGTGTCCTCCGACGGC ACGTGGCTCTGGACATTAGTGTCGTGGTGTCCTCCGACGGC < 41bp 0.516773200488101 0.71905203979985 NA NA prediction 0.404557678623497 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350399 chr17:7350398 synonymous SNV . 0 20 hm7G_associated_SNPs_36190 0 0 0 0 2 CHRNB1 chr17:7350362 3'AG 7350362 Downstream 37bp 33269 chr17 7350398 7350398 1 + C T UCEC 7350399 + 7350379 7350419 41 ACGTGGCTCTGGACATTAGCGTCGTGGTGTCCTCCGACGGC ACGTGGCTCTGGACATTAGTGTCGTGGTGTCCTCCGACGGC < 41bp 0.516773200488101 0.71905203979985 NA NA prediction 0.404557678623497 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350399 chr17:7350398 synonymous SNV . 0 20 hm7G_associated_SNPs_36190 0 0 0 0 2 CHRNB1 chr17:7350470 5'GT 7350470 Upstream 73bp 33270 chr7 129940730 129940730 1 + C T rs112580246 129940731 + 129940711 129940751 41 GCAGTAATAACTTCAACTACGGGGCTTACCATTCCCTGGAA GCAGTAATAACTTCAACTATGGGGCTTACCATTCCCTGGAA < 41bp 0.490110499394864 0.702277874003688 NA NA prediction 0.404555748007376 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129940731 chr7:129940730 synonymous SNV . 0 20 hm7G_associated_SNPs_36191 0 0 0 0 2 CPA4 chr7:129940656 3'AG 129940656 Downstream 75bp 33271 chr7 129940730 129940730 1 + C T rs112580246 129940731 + 129940711 129940751 41 GCAGTAATAACTTCAACTACGGGGCTTACCATTCCCTGGAA GCAGTAATAACTTCAACTATGGGGCTTACCATTCCCTGGAA < 41bp 0.490110499394864 0.702277874003688 NA NA prediction 0.404555748007376 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129940731 chr7:129940730 synonymous SNV . 0 20 hm7G_associated_SNPs_36191 0 0 0 0 2 CPA4 chr7:129940754 5'GT 129940754 Upstream 25bp 33272 chr11 284373 284373 1 + G A LUSC 284374 + 284354 284394 41 CTGAGTGAGGGCCTAGCCTGGCCGCAGTGCAGGGTGCAGAC CTGAGTGAGGGCCTAGCCTAGCCGCAGTGCAGGGTGCAGAC < 41bp 0.586606397350128 0.788882224820972 NA NA prediction 0.404551654941689 Functional Gain - NLRP6 ENSG00000174885 CDS Human protein_coding chr11:284374 chr11:284373 stopgain 0.962 0 20 hm7G_associated_SNPs_36192 0 0 0 0 1 NLRP6 chr11:284400 5'GT 284400 Upstream 28bp 33273 chr19 49636265 49636265 1 + C T UCEC 49636266 + 49636246 49636286 41 CTACCTCCGCAGGCGCTGGCGCAGCGGGAAGATATGGAGGA CTACCTCCGCAGGCGCTGGTGCAGCGGGAAGATATGGAGGA < 41bp 0.550575113068431 0.752850081760754 NA NA prediction 0.404549937384647 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49636266 chr19:49636265 nonsynonymous SNV 0.827 1 20 hm7G_associated_SNPs_36193 0 0 0 0 1 PPFIA3 chr19:49636258 3'AG 49636258 Downstream 8bp 33274 chr19 46205061 46205061 1 + C T PRAD 46205062 + 46205042 46205082 41 GCCCCCACTTCCAGAGAAGCGTCTGCACCGTTTGAACCTGC GCCCCCACTTCCAGAGAAGTGTCTGCACCGTTTGAACCTGC < 41bp 0.501079956808879 0.703353935996031 NA NA prediction 0.404547958374303 Functional Gain - QPCTL ENSG00000011478 CDS Human protein_coding chr19:46205062 chr19:46205061 nonsynonymous SNV 0.645 4 20 hm7G_associated_SNPs_36195 0 0 0 0 1 QPCTL chr19:46205056 3'AG 46205056 Downstream 6bp 33275 chr3 111799810 111799810 1 + G T LIHC 111799811 + 111799791 111799831 41 AGAAAAAGTGATGGAAAATGGATTTTGACTGGCATTGTTAG AGAAAAAGTGATGGAAAATTGATTTTGACTGGCATTGTTAG < 41bp 0.694375427401744 0.89664572201538 NA NA prediction 0.404540589227271 Functional Gain - TMPRSS7 ENSG00000176040 CDS Human protein_coding chr3:111799811 chr3:111799810 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36200 0 0 0 0 1 TMPRSS7 chr3:111799761 3'AG 111799761 Downstream 50bp 33276 chrX 151821056 151821056 1 + C T UCEC 151821057 + 151821037 151821077 41 TCTCTCCCCATCACCCCAGCGCAGGCCCCCCTGGCAAGCCC TCTCTCCCCATCACCCCAGTGCAGGCCCCCCTGGCAAGCCC < 41bp 0.513775491401287 0.71604336694711 NA NA prediction 0.404535751091646 Functional Gain - GABRQ ENSG00000147402 CDS Human other chrX:151821057 chrX:151821056 nonsynonymous SNV 0.047 1 20 hm7G_associated_SNPs_36202 0 0 0 0 1 GABRQ chrX:151821004 3'AG 151821004 Downstream 53bp 33277 chr5 176072499 176072499 1 + C T UCEC 176072500 + 176072480 176072520 41 AGGGAGGCGGAAAACCAGGCGGGCGTGCTGCACGTTGGGTG AGGGAGGCGGAAAACCAGGTGGGCGTGCTGCACGTTGGGTG < 41bp 0.541022106965352 0.743289942932362 NA NA prediction 0.404535671934019 Functional Gain - EIF4E1B ENSG00000175766 CDS Human protein_coding chr5:176072500 chr5:176072499 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36203 0 0 0 0 1 EIF4E1B chr5:176072517 5'GT 176072517 Upstream 19bp 33278 chr16 57180209 57180209 1 + C T COAD 57180210 + 57180190 57180230 41 CCCGCGATATTGTGCAGTTCGTTCCCTTTCGAGAGTTCCGC CCCGCGATATTGTGCAGTTTGTTCCCTTTCGAGAGTTCCGC < 41bp 0.502247554105751 0.704514992523453 NA NA prediction 0.404534876835404 Functional Gain - CPNE2 ENSG00000140848 CDS Human protein_coding chr16:57180210 chr16:57180209 synonymous SNV . 0 20 hm7G_associated_SNPs_36204 0 0 1 0 1 CPNE2 chr16:57180233 5'GT 57180233 Upstream 25bp 33279 chr19 45801031 45801031 1 + C T COAD 45801032 + 45801012 45801052 41 GGCACGTGGTTCCACCATCCGCAGCACCTTCCATGGTGGCC GGCACGTGGTTCCACCATCTGCAGCACCTTCCATGGTGGCC < 41bp 0.536741851695765 0.739005041228215 NA NA prediction 0.404526379064899 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45801032 chr19:45801031 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36207 0 0 0 0 1 MARK4 chr19:45800934 3'AG 45800934 Downstream 98bp 33280 chr4 15542494 15542494 1 + C T COAD 15542495 + 15542475 15542515 41 AAGGGAGGATGTAAAGAAGCGCTCAGTGTACTTAAAAGTGC AAGGGAGGATGTAAAGAAGTGCTCAGTGTACTTAAAAGTGC < 41bp 0.541694745436901 0.743952329515017 NA NA prediction 0.404515168156233 Functional Gain - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15542495 chr4:15542494 nonsynonymous SNV 0.944 3 20 hm7G_associated_SNPs_36212 0 0 0 1 1 CC2D2A chr4:15542460 3'AG 15542460 Downstream 35bp 33281 chr1 26899738 26899738 1 + C T rs80024567 26899739 + 26899719 26899759 41 TGGTGTCCAAGATGCTACACGTGGATCCCCACCAGCGCCTC TGGTGTCCAAGATGCTACATGTGGATCCCCACCAGCGCCTC < 41bp 0.508584251071292 0.710841484950063 NA NA prediction 0.404514467757543 Functional Gain - RPS6KA1 ENSG00000117676 CDS Human protein_coding chr1:26899739 chr1:26899738 synonymous SNV . 0 20 hm7G_associated_SNPs_36213 0 0 1 0 1 RPS6KA1 chr1:26899715 3'AG 26899715 Downstream 24bp 33282 chr12 58121794 58121794 1 - G A HNSC 58121793 - 58121773 58121813 41 GGCAGCCAGTTTTGAGGAGCGGGATGCCTGGGTCCAGGCCA GGCAGCCAGTTTTGAGGAGTGGGATGCCTGGGTCCAGGCCA < 41bp 0.520430451429899 0.722686679727173 NA NA prediction 0.404512456594549 Functional Gain - AGAP2 ENSG00000135439 CDS Human protein_coding chr12:58121793 chr12:58121794 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_36214 0 0 0 0 2 AGAP2 chr12:58121720 5'GT 58121720 Upstream 75bp 33283 chr12 58121794 58121794 1 - G A HNSC 58121793 - 58121773 58121813 41 GGCAGCCAGTTTTGAGGAGCGGGATGCCTGGGTCCAGGCCA GGCAGCCAGTTTTGAGGAGTGGGATGCCTGGGTCCAGGCCA < 41bp 0.520430451429899 0.722686679727173 NA NA prediction 0.404512456594549 Functional Gain - AGAP2 ENSG00000135439 CDS Human protein_coding chr12:58121793 chr12:58121794 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_36214 0 0 0 0 2 AGAP2 chr12:58121868 3'AG 58121868 Downstream 75bp 33284 chr17 38499089 38499089 1 + C T BLCA 38499090 + 38499070 38499110 41 TCCGTACTCCACCCCGCTCCGGACTCCGCTTTGGAATGGCT TCCGTACTCCACCCCGCTCTGGACTCCGCTTTGGAATGGCT < 41bp 0.520346507694314 0.722602087726673 NA NA prediction 0.404511160064718 Functional Gain - RARA ENSG00000131759 CDS Human protein_coding chr17:38499090 chr17:38499089 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_36215 0 0 0 0 1 RARA chr17:38499119 5'GT 38499119 Upstream 31bp 33285 chrX 47039373 47039373 1 + C T UCEC 47039374 + 47039354 47039394 41 TGTCCTCCTCCAACGTGCGCGTCATAAAGGACAAGCAGACC TGTCCTCCTCCAACGTGCGTGTCATAAAGGACAAGCAGACC < 41bp 0.507820081482305 0.71007488150251 NA NA prediction 0.404509600040409 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47039374 chrX:47039373 synonymous SNV . 0 20 hm7G_associated_SNPs_36216 0 0 1 0 3 RBM10 chrX:47039279 3'AG 47039279 Downstream 95bp 33286 chrX 47039373 47039373 1 + C T UCEC 47039374 + 47039354 47039394 41 TGTCCTCCTCCAACGTGCGCGTCATAAAGGACAAGCAGACC TGTCCTCCTCCAACGTGCGTGTCATAAAGGACAAGCAGACC < 41bp 0.507820081482305 0.71007488150251 NA NA prediction 0.404509600040409 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47039374 chrX:47039373 synonymous SNV . 0 20 hm7G_associated_SNPs_36216 0 0 1 0 3 RBM10 chrX:47039436 5'GT 47039436 Upstream 64bp 33287 chrX 47039373 47039373 1 + C T UCEC 47039374 + 47039354 47039394 41 TGTCCTCCTCCAACGTGCGCGTCATAAAGGACAAGCAGACC TGTCCTCCTCCAACGTGCGTGTCATAAAGGACAAGCAGACC < 41bp 0.507820081482305 0.71007488150251 NA NA prediction 0.404509600040409 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47039374 chrX:47039373 synonymous SNV . 0 20 hm7G_associated_SNPs_36216 0 0 1 0 3 RBM10 chrX:47039439 5'GT 47039439 Upstream 67bp 33288 chr18 12277215 12277215 1 + G A OV 12277216 + 12277196 12277236 41 TCCGGGTGCTGGATGACAAGGAAGAGCGGCCATCCCTCCGG TCCGGGTGCTGGATGACAAAGAAGAGCGGCCATCCCTCCGG < 41bp 0.562564190402202 0.764818935031813 NA NA prediction 0.404509489259223 Functional Gain - CIDEA ENSG00000176194 CDS Human protein_coding chr18:12277216 chr18:12277215 synonymous SNV . 0 20 hm7G_associated_SNPs_36218 0 0 0 0 1 CIDEA chr18:12277122 3'AG 12277122 Downstream 94bp 33289 chr6 10913137 10913137 1 + C T GBM 10913138 + 10913118 10913158 41 GTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC GTGACACTTCCGAAGGAAGTGGTGATGAATTTCAGCATAAC < 41bp 0.495277426205608 0.702249754434528 NA NA prediction 0.404499508869056 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10913138 chr6:10913137 nonsynonymous SNV 0.576 1 20 hm7G_associated_SNPs_36220 0 0 1 0 2 SYCP2L chr6:10913100 3'AG 10913100 Downstream 38bp 33290 chr6 10913137 10913137 1 + C T GBM 10913138 + 10913118 10913158 41 GTGACACTTCCGAAGGAAGCGGTGATGAATTTCAGCATAAC GTGACACTTCCGAAGGAAGTGGTGATGAATTTCAGCATAAC < 41bp 0.495277426205608 0.702249754434528 NA NA prediction 0.404499508869056 Functional Gain - SYCP2L ENSG00000153157 CDS Human protein_coding chr6:10913138 chr6:10913137 nonsynonymous SNV 0.576 1 20 hm7G_associated_SNPs_36220 0 0 1 0 2 SYCP2L chr6:10913160 5'GT 10913160 Upstream 24bp 33291 chr15 45427459 45427459 1 + C T COAD 45427460 + 45427440 45427480 41 GCCGCTGGGACCCCGAGACCGGACGGAGTCCCAGCAATCCC GCCGCTGGGACCCCGAGACTGGACGGAGTCCCAGCAATCCC < 41bp 0.535950453647105 0.738199905597455 NA NA prediction 0.404498903900701 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45427460 chr15:45427459 synonymous SNV . 0 20 hm7G_associated_SNPs_36221 0 0 0 0 1 DUOX1 chr15:45427489 5'GT 45427489 Upstream 31bp 33292 chr10 30747105 30747105 1 + G A COAD 30747106 + 30747086 30747126 41 CGCTCATCCACATGCAGACGGGCACCCCACCCTGGGTGAAG CGCTCATCCACATGCAGACAGGCACCCCACCCTGGGTGAAG < 41bp 0.552611043105537 0.754859764468611 NA NA prediction 0.404497442726147 Functional Gain - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30747106 chr10:30747105 synonymous SNV . 0 20 hm7G_associated_SNPs_36222 0 0 0 0 2 MAP3K8 chr10:30747013 3'AG 30747013 Downstream 93bp 33293 chr10 30747105 30747105 1 + G A COAD 30747106 + 30747086 30747126 41 CGCTCATCCACATGCAGACGGGCACCCCACCCTGGGTGAAG CGCTCATCCACATGCAGACAGGCACCCCACCCTGGGTGAAG < 41bp 0.552611043105537 0.754859764468611 NA NA prediction 0.404497442726147 Functional Gain - MAP3K8 ENSG00000107968 CDS Human protein_coding chr10:30747106 chr10:30747105 synonymous SNV . 0 20 hm7G_associated_SNPs_36222 0 0 0 0 2 MAP3K8 chr10:30747165 5'GT 30747165 Upstream 61bp 33294 chr12 3040343 3040343 1 + G T LUAD 3040344 + 3040324 3040364 41 GGATAATCCGGGATAAAAGGGGAATGGATCGGGGTCTCTTC GGATAATCCGGGATAAAAGTGGAATGGATCGGGGTCTCTTC < 41bp 0.715156101309463 0.917404068415867 NA NA prediction 0.404495934212808 Functional Gain - TULP3 ENSG00000078246 CDS Human protein_coding chr12:3040344 chr12:3040343 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_36223 0 0 1 1 1 TULP3 chr12:3040406 5'GT 3040406 Upstream 64bp 33295 chr1 12026364 12026364 1 + G A UCEC 12026365 + 12026345 12026385 41 AAGCCCTGGCAGGGAAGCTGGTGGAGACGGTAAGGGCCATG AAGCCCTGGCAGGGAAGCTAGTGGAGACGGTAAGGGCCATG < 41bp 0.506596577438761 0.708844341596515 NA NA prediction 0.404495528315509 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12026365 chr1:12026364 synonymous SNV . 0 20 hm7G_associated_SNPs_36224 0 0 1 0 2 PLOD1 chr1:12026308 3'AG 12026308 Downstream 57bp 33296 chr1 12026364 12026364 1 + G A UCEC 12026365 + 12026345 12026385 41 AAGCCCTGGCAGGGAAGCTGGTGGAGACGGTAAGGGCCATG AAGCCCTGGCAGGGAAGCTAGTGGAGACGGTAAGGGCCATG < 41bp 0.506596577438761 0.708844341596515 NA NA prediction 0.404495528315509 Functional Gain - PLOD1 ENSG00000083444 CDS Human protein_coding chr1:12026365 chr1:12026364 synonymous SNV . 0 20 hm7G_associated_SNPs_36224 0 0 1 0 2 PLOD1 chr1:12026373 5'GT 12026373 Upstream 10bp 33297 chr1 196715081 196715081 1 + C T COAD 196715082 + 196715062 196715102 41 TCAACTTGAGGGTAACAAGCGAATAACATGTAGAAATGGAC TCAACTTGAGGGTAACAAGTGAATAACATGTAGAAATGGAC < 41bp 0.508789979254741 0.71103756188452 NA NA prediction 0.404495165259557 Functional Gain - CFH ENSG00000000971 CDS Human protein_coding chr1:196715082 chr1:196715081 stopgain 0.024 0 20 hm7G_associated_SNPs_36225 0 0 0 0 1 CFH chr1:196715129 5'GT 196715129 Upstream 49bp 33298 chr11 128638163 128638163 1 + C T COAD 128638164 + 128638144 128638184 41 AGAGGAGAGTCATCGTCCCCGCAGGTAATTCGAGAACCAGG AGAGGAGAGTCATCGTCCCTGCAGGTAATTCGAGAACCAGG < 41bp 0.492340690606518 0.702247130127291 NA NA prediction 0.404494260254581 Functional Gain - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128638164 chr11:128638163 synonymous SNV . 0 20 hm7G_associated_SNPs_36226 0 0 0 0 1 FLI1 chr11:128638167 5'GT 128638167 Upstream 5bp 33299 chr4 71628262 71628262 1 + C T COAD 71628263 + 71628243 71628283 41 TTATCTCATGGCTAATGAACGCATGAACCTCATGAACATGG TTATCTCATGGCTAATGAATGCATGAACCTCATGAACATGG < 41bp 0.524291491006847 0.726538453391064 NA NA prediction 0.404493924768434 Functional Gain - RUFY3 ENSG00000018189 CDS Human protein_coding chr4:71628263 chr4:71628262 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36227 0 0 1 0 1 RUFY3 chr4:71628236 3'AG 71628236 Downstream 27bp 33300 chr10 93608154 93608154 1 + C T UCEC 93608155 + 93608135 93608175 41 CCTAGGCGGATGATGTCAGCGCTCTTCTGACAGCAGCCATG CCTAGGCGGATGATGTCAGTGCTCTTCTGACAGCAGCCATG < 41bp 0.551477637914746 0.753724173645004 NA NA prediction 0.404493071460515 Functional Gain - TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93608155 chr10:93608154 synonymous SNV . 0 20 hm7G_associated_SNPs_36228 0 0 1 0 1 TNKS2 chr10:93608140 3'AG 93608140 Downstream 15bp 33301 chr17 45821658 45821658 1 + C T MESO 45821659 + 45821639 45821679 41 GCCTGCAACGCTTCCAACACGCATATCTTTACTTTCCAAGA GCCTGCAACGCTTCCAACATGCATATCTTTACTTTCCAAGA < 41bp 0.518122682506533 0.720368119924514 NA NA prediction 0.404490874835961 Functional Gain - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45821659 chr17:45821658 nonsynonymous SNV 0.927 4 20 hm7G_associated_SNPs_36229 0 0 0 0 2 TBX21 chr17:45821561 3'AG 45821561 Downstream 98bp 33302 chr17 45821658 45821658 1 + C T MESO 45821659 + 45821639 45821679 41 GCCTGCAACGCTTCCAACACGCATATCTTTACTTTCCAAGA GCCTGCAACGCTTCCAACATGCATATCTTTACTTTCCAAGA < 41bp 0.518122682506533 0.720368119924514 NA NA prediction 0.404490874835961 Functional Gain - TBX21 ENSG00000073861 CDS Human protein_coding chr17:45821659 chr17:45821658 nonsynonymous SNV 0.927 4 20 hm7G_associated_SNPs_36229 0 0 0 0 2 TBX21 chr17:45821719 5'GT 45821719 Upstream 62bp 33303 chr2 47288073 47288073 1 + C T UCEC 47288074 + 47288054 47288094 41 CTGTACAAGGAGGCGCTCACGGTGAACCCAGATGGCGTGCG CTGTACAAGGAGGCGCTCATGGTGAACCCAGATGGCGTGCG < 41bp 0.55790388023862 0.7601487213442 NA NA prediction 0.404489682211159 Functional Gain - TTC7A ENSG00000068724 CDS Human protein_coding chr2:47288074 chr2:47288073 nonsynonymous SNV 0.971 4 20 hm7G_associated_SNPs_36230 0 0 0 0 1 TTC7A chr2:47288110 5'GT 47288110 Upstream 38bp 33304 chr16 20422911 20422911 1 + C T SKCM 20422912 + 20422892 20422932 41 TACCTGTTCCTCAGAAGATCGTGGCCACCTGGGAAGCCATC TACCTGTTCCTCAGAAGATTGTGGCCACCTGGGAAGCCATC < 41bp 0.506210554363611 0.708455098960687 NA NA prediction 0.404489089194153 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20422912 chr16:20422911 synonymous SNV . 0 20 hm7G_associated_SNPs_36231 0 0 0 0 1 ACSM5 chr16:20423010 5'GT 20423010 Upstream 100bp 33305 chr8 124154598 124154598 1 + C T UCEC 124154599 + 124154579 124154619 41 AAAATGTGATGATCTACAACGAAACAAATGTTACCAGGAAG AAAATGTGATGATCTACAATGAAACAAATGTTACCAGGAAG < 41bp 0.522303686913986 0.724547014542882 NA NA prediction 0.404486655257792 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124154599 chr8:124154598 stopgain 0.030 1 20 hm7G_associated_SNPs_36233 0 0 0 0 2 TBC1D31 chr8:124154502 3'AG 124154502 Downstream 97bp 33306 chr8 124154598 124154598 1 + C T UCEC 124154599 + 124154579 124154619 41 AAAATGTGATGATCTACAACGAAACAAATGTTACCAGGAAG AAAATGTGATGATCTACAATGAAACAAATGTTACCAGGAAG < 41bp 0.522303686913986 0.724547014542882 NA NA prediction 0.404486655257792 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124154599 chr8:124154598 stopgain 0.030 1 20 hm7G_associated_SNPs_36233 0 0 0 0 2 TBC1D31 chr8:124154696 5'GT 124154696 Upstream 99bp 33307 chr15 40756212 40756212 1 + C T STAD 40756213 + 40756193 40756233 41 CTGCCCTCTGGGAGAACCCCGAGTCAGGTACCTCTCCCTCT CTGCCCTCTGGGAGAACCCTGAGTCAGGTACCTCTCCCTCT < 41bp 0.520022260659728 0.722263983920098 NA NA prediction 0.404483446520741 Functional Gain - BAHD1 ENSG00000140320 CDS Human protein_coding chr15:40756213 chr15:40756212 synonymous SNV . 0 20 hm7G_associated_SNPs_36235 0 0 1 0 1 BAHD1 chr15:40756219 5'GT 40756219 Upstream 8bp 33308 chr2 113953336 113953336 1 + C T COAD 113953337 + 113953317 113953357 41 CTATCCGCAGCGAGAAGCTCGAGTGGGCCGTGTGAGTGAGA CTATCCGCAGCGAGAAGCTTGAGTGGGCCGTGTGAGTGAGA < 41bp 0.542128354471126 0.744369647535361 NA NA prediction 0.404482586128471 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113953337 chr2:113953336 synonymous SNV . 0 20 hm7G_associated_SNPs_36236 0 0 1 0 2 PSD4 chr2:113953304 3'AG 113953304 Downstream 33bp 33309 chr2 113953336 113953336 1 + C T COAD 113953337 + 113953317 113953357 41 CTATCCGCAGCGAGAAGCTCGAGTGGGCCGTGTGAGTGAGA CTATCCGCAGCGAGAAGCTTGAGTGGGCCGTGTGAGTGAGA < 41bp 0.542128354471126 0.744369647535361 NA NA prediction 0.404482586128471 Functional Gain - PSD4 ENSG00000125637 CDS Human protein_coding chr2:113953337 chr2:113953336 synonymous SNV . 0 20 hm7G_associated_SNPs_36236 0 0 1 0 2 PSD4 chr2:113953347 5'GT 113953347 Upstream 12bp 33310 chr19 3738585 3738585 1 + G A SKCM 3738586 + 3738566 3738606 41 CATTCCAGAACCTGACACGGGAGGAGGCAGTGCAGTTCCTG CATTCCAGAACCTGACACGAGAGGAGGCAGTGCAGTTCCTG < 41bp 0.485245392927625 0.702240970897861 NA NA prediction 0.404481941795723 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3738586 chr19:3738585 synonymous SNV . 0 20 hm7G_associated_SNPs_36237 0 0 1 0 2 TJP3 chr19:3738553 3'AG 3738553 Downstream 33bp 33311 chr19 3738585 3738585 1 + G A SKCM 3738586 + 3738566 3738606 41 CATTCCAGAACCTGACACGGGAGGAGGCAGTGCAGTTCCTG CATTCCAGAACCTGACACGAGAGGAGGCAGTGCAGTTCCTG < 41bp 0.485245392927625 0.702240970897861 NA NA prediction 0.404481941795723 Functional Gain - TJP3 ENSG00000105289 CDS Human protein_coding chr19:3738586 chr19:3738585 synonymous SNV . 0 20 hm7G_associated_SNPs_36237 0 0 1 0 2 TJP3 chr19:3738661 5'GT 3738661 Upstream 77bp 33312 chr5 146750275 146750275 1 + C T STAD 146750276 + 146750256 146750296 41 ATTGTACACACGTTTGAGACGACTGTTGTAACTTACCCTTC ATTGTACACACGTTTGAGATGACTGTTGTAACTTACCCTTC < 41bp 0.532991040300211 0.7352303400227 NA NA prediction 0.404478599444979 Functional Gain - STK32A ENSG00000169302 CDS Human protein_coding chr5:146750276 chr5:146750275 nonsynonymous SNV 0.878 4 20 hm7G_associated_SNPs_36238 0 0 0 0 2 STK32A chr5:146750217 3'AG 146750217 Downstream 59bp 33313 chr5 146750275 146750275 1 + C T STAD 146750276 + 146750256 146750296 41 ATTGTACACACGTTTGAGACGACTGTTGTAACTTACCCTTC ATTGTACACACGTTTGAGATGACTGTTGTAACTTACCCTTC < 41bp 0.532991040300211 0.7352303400227 NA NA prediction 0.404478599444979 Functional Gain - STK32A ENSG00000169302 CDS Human protein_coding chr5:146750276 chr5:146750275 nonsynonymous SNV 0.878 4 20 hm7G_associated_SNPs_36238 0 0 0 0 2 STK32A chr5:146750333 5'GT 146750333 Upstream 59bp 33314 chr5 75948599 75948599 1 + C T COAD 75948600 + 75948580 75948620 41 TTGGAAAGGATATAAACAACGGAAGGAGTATATGCACAGGC TTGGAAAGGATATAAACAATGGAAGGAGTATATGCACAGGC < 41bp 0.536788763952659 0.73902736875769 NA NA prediction 0.404477209610062 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75948600 chr5:75948599 nonsynonymous SNV 0.024 2 20 hm7G_associated_SNPs_36239 0 0 1 0 2 IQGAP2 chr5:75948575 3'AG 75948575 Downstream 25bp 33315 chr5 75948599 75948599 1 + C T COAD 75948600 + 75948580 75948620 41 TTGGAAAGGATATAAACAACGGAAGGAGTATATGCACAGGC TTGGAAAGGATATAAACAATGGAAGGAGTATATGCACAGGC < 41bp 0.536788763952659 0.73902736875769 NA NA prediction 0.404477209610062 Functional Gain - IQGAP2 ENSG00000145703 CDS Human protein_coding chr5:75948600 chr5:75948599 nonsynonymous SNV 0.024 2 20 hm7G_associated_SNPs_36239 0 0 1 0 2 IQGAP2 chr5:75948658 5'GT 75948658 Upstream 60bp 33316 chr16 87723292 87723292 1 + C T rs147815096 87723293 + 87723273 87723313 41 AGCGTCAGACCTCCTGTGACGACATCGAGGTGCTGTCCACC AGCGTCAGACCTCCTGTGATGACATCGAGGTGCTGTCCACC < 41bp 0.508494937234262 0.710726534926009 NA NA prediction 0.404463195383493 Functional Gain - JPH3 ENSG00000154118 CDS Human protein_coding chr16:87723293 chr16:87723292 synonymous SNV . 0 20 hm7G_associated_SNPs_36244 0 0 1 0 1 JPH3 chr16:87723252 3'AG 87723252 Downstream 41bp 33317 chr1 182775341 182775341 1 + G T LUSC 182775342 + 182775322 182775362 41 AGCGTCGCCAGGTTGCAGAGGAGTGGGTGACAAAAGGGAAG AGCGTCGCCAGGTTGCAGATGAGTGGGTGACAAAAGGGAAG < 41bp 0.650977223811014 0.853207411826163 NA NA prediction 0.404460376030299 Functional Gain - NPL ENSG00000135838 CDS Human protein_coding chr1:182775342 chr1:182775341 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_36246 0 0 0 3 2 NPL chr1:182775280 3'AG 182775280 Downstream 62bp 33318 chr1 182775341 182775341 1 + G T LUSC 182775342 + 182775322 182775362 41 AGCGTCGCCAGGTTGCAGAGGAGTGGGTGACAAAAGGGAAG AGCGTCGCCAGGTTGCAGATGAGTGGGTGACAAAAGGGAAG < 41bp 0.650977223811014 0.853207411826163 NA NA prediction 0.404460376030299 Functional Gain - NPL ENSG00000135838 CDS Human protein_coding chr1:182775342 chr1:182775341 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_36246 0 0 0 3 2 NPL chr1:182775367 5'GT 182775367 Upstream 27bp 33319 chr20 30661559 30661559 1 + C T UCEC 30661560 + 30661540 30661580 41 TGGTTGCCCTGTATGATTACGAGGCCATTCACCACGAAGAC TGGTTGCCCTGTATGATTATGAGGCCATTCACCACGAAGAC < 41bp 0.564883412164297 0.76711207667658 NA NA prediction 0.404457329024566 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30661560 chr20:30661559 synonymous SNV . 0 20 hm7G_associated_SNPs_36249 0 0 0 0 3 HCK chr20:30661519 3'AG 30661519 Downstream 41bp 33320 chr20 30661559 30661559 1 + C T UCEC 30661560 + 30661540 30661580 41 TGGTTGCCCTGTATGATTACGAGGCCATTCACCACGAAGAC TGGTTGCCCTGTATGATTATGAGGCCATTCACCACGAAGAC < 41bp 0.564883412164297 0.76711207667658 NA NA prediction 0.404457329024566 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30661560 chr20:30661559 synonymous SNV . 0 20 hm7G_associated_SNPs_36249 0 0 0 0 3 HCK chr20:30661522 3'AG 30661522 Downstream 38bp 33321 chr20 30661559 30661559 1 + C T UCEC 30661560 + 30661540 30661580 41 TGGTTGCCCTGTATGATTACGAGGCCATTCACCACGAAGAC TGGTTGCCCTGTATGATTATGAGGCCATTCACCACGAAGAC < 41bp 0.564883412164297 0.76711207667658 NA NA prediction 0.404457329024566 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30661560 chr20:30661559 synonymous SNV . 0 20 hm7G_associated_SNPs_36249 0 0 0 0 3 HCK chr20:30661621 5'GT 30661621 Upstream 63bp 33322 chrX 70345919 70345919 1 + G T LUAD 70345920 + 70345900 70345940 41 CAGAAGCGGCGACGCAACCGGCCTGAAGCCTTCCCCACTGC CAGAAGCGGCGACGCAACCTGCCTGAAGCCTTCCCCACTGC < 41bp 0.349181338648096 0.702228528696902 NA NA prediction 0.404457057393804 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70345920 chrX:70345919 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36250 0 0 0 0 2 MED12 chrX:70345886 3'AG 70345886 Downstream 34bp 33323 chrX 70345919 70345919 1 + G T LUAD 70345920 + 70345900 70345940 41 CAGAAGCGGCGACGCAACCGGCCTGAAGCCTTCCCCACTGC CAGAAGCGGCGACGCAACCTGCCTGAAGCCTTCCCCACTGC < 41bp 0.349181338648096 0.702228528696902 NA NA prediction 0.404457057393804 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70345920 chrX:70345919 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36250 0 0 0 0 2 MED12 chrX:70346004 5'GT 70346004 Upstream 86bp 33324 chr15 59102504 59102504 1 + C T UCEC 59102505 + 59102485 59102525 41 TGTAAGATTCACTGGTGTTCGAGTGTTTGAATATACACCAG TGTAAGATTCACTGGTGTTTGAGTGTTTGAATATACACCAG < 41bp 0.528070553059845 0.730296755692911 NA NA prediction 0.404452405266133 Functional Gain - MINDY2 ENSG00000128923 CDS Human protein_coding chr15:59102505 chr15:59102504 stopgain 0.998 1 20 hm7G_associated_SNPs_36252 0 0 1 0 2 MINDY2 chr15:59102429 3'AG 59102429 Downstream 76bp 33325 chr15 59102504 59102504 1 + C T UCEC 59102505 + 59102485 59102525 41 TGTAAGATTCACTGGTGTTCGAGTGTTTGAATATACACCAG TGTAAGATTCACTGGTGTTTGAGTGTTTGAATATACACCAG < 41bp 0.528070553059845 0.730296755692911 NA NA prediction 0.404452405266133 Functional Gain - MINDY2 ENSG00000128923 CDS Human protein_coding chr15:59102505 chr15:59102504 stopgain 0.998 1 20 hm7G_associated_SNPs_36252 0 0 1 0 2 MINDY2 chr15:59102587 5'GT 59102587 Upstream 84bp 33326 chr4 47565664 47565664 1 + C T UCEC 47565665 + 47565645 47565685 41 ATAGAAGCTCTTCACAAAGCGGGCATCAAGATCTGGATGCT ATAGAAGCTCTTCACAAAGTGGGCATCAAGATCTGGATGCT < 41bp 0.534261404348932 0.73648748132646 NA NA prediction 0.404452153955055 Functional Gain - ATP10D ENSG00000145246 CDS Human protein_coding chr4:47565665 chr4:47565664 nonsynonymous SNV 0.818 5 20 hm7G_associated_SNPs_36253 0 0 0 0 1 ATP10D chr4:47565598 3'AG 47565598 Downstream 67bp 33327 chr16 67683828 67683828 1 + C T GBM 67683829 + 67683809 67683849 41 CTGAACGACGTGGCCCAGGCGCAGCGCAGCCGCCCGGAACT CTGAACGACGTGGCCCAGGTGCAGCGCAGCCGCCCGGAACT < 41bp 0.491273999546266 0.702224010064614 NA NA prediction 0.404448020129228 Functional Gain - CARMIL2 ENSG00000159753 CDS Human protein_coding chr16:67683829 chr16:67683828 nonsynonymous SNV 0.914 4 20 hm7G_associated_SNPs_36255 0 0 0 0 1 CARMIL2 chr16:67683871 5'GT 67683871 Upstream 44bp 33328 chr8 68992691 68992691 1 + C T UCEC 68992692 + 68992672 68992712 41 CTGTAGTCCTTGAAAAAAGCGAATTCAAAGATGAACCCCTA CTGTAGTCCTTGAAAAAAGTGAATTCAAAGATGAACCCCTA < 41bp 0.523491575207627 0.725714895039852 NA NA prediction 0.40444663966445 Functional Gain - PREX2 ENSG00000046889 CDS Human protein_coding chr8:68992692 chr8:68992691 synonymous SNV . 0 20 hm7G_associated_SNPs_36257 0 0 0 0 1 PREX2 chr8:68992678 3'AG 68992678 Downstream 14bp 33329 chr10 124273725 124273725 1 + C T UCEC 124273726 + 124273706 124273746 41 GTGGTGGTCTCAAGGAAAACGACGTCATAATCAGCATCAAT GTGGTGGTCTCAAGGAAAATGACGTCATAATCAGCATCAAT < 41bp 0.50743059249671 0.709651331699777 NA NA prediction 0.404441478406134 Functional Gain - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124273726 chr10:124273725 synonymous SNV . 0 20 hm7G_associated_SNPs_36258 0 0 0 0 1 HTRA1 chr10:124273707 3'AG 124273707 Downstream 19bp 33330 chr19 55805606 55805606 1 + G A LGG 55805607 + 55805587 55805627 41 CCCATTATGCGTGTCCAGAGGTGATTAAGGTGAGTGAGGGG CCCATTATGCGTGTCCAGAAGTGATTAAGGTGAGTGAGGGG < 41bp 0.536348864127653 0.738567741188945 NA NA prediction 0.404437754122584 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55805607 chr19:55805606 synonymous SNV . 0 20 hm7G_associated_SNPs_36259 0 0 0 0 2 BRSK1 chr19:55805582 3'AG 55805582 Downstream 25bp 33331 chr19 55805606 55805606 1 + G A LGG 55805607 + 55805587 55805627 41 CCCATTATGCGTGTCCAGAGGTGATTAAGGTGAGTGAGGGG CCCATTATGCGTGTCCAGAAGTGATTAAGGTGAGTGAGGGG < 41bp 0.536348864127653 0.738567741188945 NA NA prediction 0.404437754122584 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55805607 chr19:55805606 synonymous SNV . 0 20 hm7G_associated_SNPs_36259 0 0 0 0 2 BRSK1 chr19:55805615 5'GT 55805615 Upstream 10bp 33332 chrX 74494412 74494412 1 + C T LIHC 74494413 + 74494393 74494433 41 CTCTCCCGGCAGATCGGGGCGCAGCTTAAGCTGCTGCCTAT CTCTCCCGGCAGATCGGGGTGCAGCTTAAGCTGCTGCCTAT < 41bp 0.524278250044931 0.726495726168584 NA NA prediction 0.404434952247306 Functional Gain - UPRT ENSG00000094841 CDS Human protein_coding chrX:74494413 chrX:74494412 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_36261 0 0 0 0 1 UPRT chrX:74494475 5'GT 74494475 Upstream 64bp 33333 chr11 124951749 124951749 1 + G A STAD 124951750 + 124951730 124951770 41 TGTGGCCAAATGCTCCAAGGGGCCATGCGAAGAGCCTGCTG TGTGGCCAAATGCTCCAAGAGGCCATGCGAAGAGCCTGCTG < 41bp 0.474339225402215 0.702214662612185 NA NA prediction 0.404429325224371 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124951750 chr11:124951749 nonsynonymous SNV 0.127 0 20 hm7G_associated_SNPs_36264 0 0 0 0 1 SLC37A2 chr11:124951802 5'GT 124951802 Upstream 54bp 33334 chr10 73048423 73048423 1 + G A SKCM 73048424 + 73048404 73048444 41 GGCGCCCCCACCCCAGAACGGAGGCCGTGACTGCAGCGGGA GGCGCCCCCACCCCAGAACAGAGGCCGTGACTGCAGCGGGA < 41bp 0.486537613792263 0.702211957254865 NA NA prediction 0.40442391450973 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73048424 chr10:73048423 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36265 0 0 1 0 2 UNC5B chr10:73048325 3'AG 73048325 Downstream 99bp 33335 chr10 73048423 73048423 1 + G A SKCM 73048424 + 73048404 73048444 41 GGCGCCCCCACCCCAGAACGGAGGCCGTGACTGCAGCGGGA GGCGCCCCCACCCCAGAACAGAGGCCGTGACTGCAGCGGGA < 41bp 0.486537613792263 0.702211957254865 NA NA prediction 0.40442391450973 Functional Gain - UNC5B ENSG00000107731 CDS Human protein_coding chr10:73048424 chr10:73048423 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36265 0 0 1 0 2 UNC5B chr10:73048489 5'GT 73048489 Upstream 67bp 33336 chr16 81712200 81712200 1 + C T STAD 81712201 + 81712181 81712221 41 GGCCCCCAGGCCGACCGCACGCTCGGCTGCTACGTGGAAAT GGCCCCCAGGCCGACCGCATGCTCGGCTGCTACGTGGAAAT < 41bp 0.498641633542839 0.702210747474528 NA NA prediction 0.404421494949056 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81712201 chr16:81712200 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36267 0 0 1 0 1 CMIP chr16:81712233 5'GT 81712233 Upstream 34bp 33337 chr19 48833630 48833630 1 + G A UCEC 48833631 + 48833611 48833651 41 CTGGAGAAGCACCCGCGAGGGGGCAGCTTCGGATACTGCTT CTGGAGAAGCACCCGCGAGAGGGCAGCTTCGGATACTGCTT < 41bp 0.563265007472601 0.765474043706415 NA NA prediction 0.404418072467627 Functional Gain - EMP3 ENSG00000142227 CDS Human protein_coding chr19:48833631 chr19:48833630 nonsynonymous SNV 0.918 1 20 hm7G_associated_SNPs_36270 0 0 1 0 1 EMP3 chr19:48833558 3'AG 48833558 Downstream 73bp 33338 chr21 43510463 43510463 1 + C T UCEC 43510464 + 43510444 43510484 41 GCTCTGGAAGGGAACTGTGCGCAAACCTGGAGGGCTCGTAC GCTCTGGAAGGGAACTGTGTGCAAACCTGGAGGGCTCGTAC < 41bp 0.522536075372933 0.724744485088581 NA NA prediction 0.404416819431296 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43510464 chr21:43510463 synonymous SNV . 0 20 hm7G_associated_SNPs_36271 0 0 0 0 2 UMODL1 chr21:43510408 3'AG 43510408 Downstream 56bp 33339 chr21 43510463 43510463 1 + C T UCEC 43510464 + 43510444 43510484 41 GCTCTGGAAGGGAACTGTGCGCAAACCTGGAGGGCTCGTAC GCTCTGGAAGGGAACTGTGTGCAAACCTGGAGGGCTCGTAC < 41bp 0.522536075372933 0.724744485088581 NA NA prediction 0.404416819431296 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43510464 chr21:43510463 synonymous SNV . 0 20 hm7G_associated_SNPs_36271 0 0 0 0 2 UMODL1 chr21:43510548 5'GT 43510548 Upstream 86bp 33340 chr12 96350502 96350502 1 + G A SKCM 96350503 + 96350483 96350523 41 GGAAATTCACCAGGCCGGAGGAGGGATCCACTTTACCGTGG GGAAATTCACCAGGCCGGAAGAGGGATCCACTTTACCGTGG < 41bp 0.51201608452552 0.714222159264024 NA NA prediction 0.404412149477009 Functional Gain - AMDHD1 ENSG00000139344 CDS Human protein_coding chr12:96350503 chr12:96350502 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36272 0 0 1 0 1 AMDHD1 chr12:96350463 3'AG 96350463 Downstream 40bp 33341 chr12 121002881 121002881 1 + C T PCPG 121002882 + 121002862 121002902 41 TTTTCCAATGTAGGATGTTCGACAGCGTCACAGATATCTCT TTTTCCAATGTAGGATGTTTGACAGCGTCACAGATATCTCT < 41bp 0.534587214390165 0.736788397087885 NA NA prediction 0.404402365395441 Functional Gain - RNF10 ENSG00000022840 CDS Human protein_coding chr12:121002882 chr12:121002881 stopgain 1.000 1 20 hm7G_associated_SNPs_36274 0 0 1 0 1 RNF10 chr12:121002875 3'AG 121002875 Downstream 7bp 33342 chr1 9661174 9661174 1 + C T LUSC 9661175 + 9661155 9661195 41 CTTTGCAGAACTTCTCCTCCGCCGTGAAGTCCCCGGTCCAG CTTTGCAGAACTTCTCCTCTGCCGTGAAGTCCCCGGTCCAG < 41bp 0.493602137964745 0.702200822015281 NA NA prediction 0.404401644030563 Functional Gain - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9661175 chr1:9661174 synonymous SNV . 0 20 hm7G_associated_SNPs_36275 0 0 1 0 1 TMEM201 chr1:9661163 3'AG 9661163 Downstream 12bp 33343 chr21 43549838 43549838 1 + C T UCEC 43549839 + 43549819 43549859 41 ACAGAATTGCAATAACTTTCGGTTGCTGCAAAATAGTGAAA ACAGAATTGCAATAACTTTTGGTTGCTGCAAAATAGTGAAA < 41bp 0.51311509864148 0.715313429900368 NA NA prediction 0.404396662517777 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43549839 chr21:43549838 nonsynonymous SNV 0.020 3 20 hm7G_associated_SNPs_36277 0 0 0 8 2 UMODL1 chr21:43549823 3'AG 43549823 Downstream 16bp 33344 chr21 43549838 43549838 1 + C T UCEC 43549839 + 43549819 43549859 41 ACAGAATTGCAATAACTTTCGGTTGCTGCAAAATAGTGAAA ACAGAATTGCAATAACTTTTGGTTGCTGCAAAATAGTGAAA < 41bp 0.51311509864148 0.715313429900368 NA NA prediction 0.404396662517777 Functional Gain - UMODL1 ENSG00000177398 CDS Human protein_coding chr21:43549839 chr21:43549838 nonsynonymous SNV 0.020 3 20 hm7G_associated_SNPs_36277 0 0 0 8 2 UMODL1 chr21:43549907 5'GT 43549907 Upstream 70bp 33345 chrX 129480604 129480604 1 + G A UCEC 129480605 + 129480585 129480625 41 CAAAGAGATAAAATATAGAGGGATGTTCCATGCGCTGTTTC CAAAGAGATAAAATATAGAAGGATGTTCCATGCGCTGTTTC < 41bp 0.506843732722359 0.709041905748012 NA NA prediction 0.404396346051305 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129480605 chrX:129480604 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_36278 0 0 1 0 1 SLC25A14 chrX:129480518 3'AG 129480518 Downstream 87bp 33346 chr1 41289856 41289856 1 + C T COAD 41289857 + 41289837 41289877 41 GGCGGGCGCCGGTACCCGACGGAGCACCCTCCCGTTACCCG GGCGGGCGCCGGTACCCGATGGAGCACCCTCCCGTTACCCG < 41bp 0.500272585763867 0.702470228634814 NA NA prediction 0.404395285741894 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289857 chr1:41289856 synonymous SNV . 0 20 hm7G_associated_SNPs_36279 0 0 0 0 2 KCNQ4 chr1:41289769 3'AG 41289769 Downstream 88bp 33347 chr1 41289856 41289856 1 + C T COAD 41289857 + 41289837 41289877 41 GGCGGGCGCCGGTACCCGACGGAGCACCCTCCCGTTACCCG GGCGGGCGCCGGTACCCGATGGAGCACCCTCCCGTTACCCG < 41bp 0.500272585763867 0.702470228634814 NA NA prediction 0.404395285741894 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41289857 chr1:41289856 synonymous SNV . 0 20 hm7G_associated_SNPs_36279 0 0 0 0 2 KCNQ4 chr1:41289930 5'GT 41289930 Upstream 75bp 33348 chr11 121023729 121023729 1 + C T STAD 121023730 + 121023710 121023750 41 ACGCTGGCTACGTCCTCAACGGCAAGAGCTGCATCCTGCCC ACGCTGGCTACGTCCTCAATGGCAAGAGCTGCATCCTGCCC < 41bp 0.546554999587048 0.748752384024499 NA NA prediction 0.404394768874903 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121023730 chr11:121023729 synonymous SNV . 0 20 hm7G_associated_SNPs_36280 0 0 0 0 1 TECTA chr11:121023789 5'GT 121023789 Upstream 61bp 33349 chr1 151509750 151509750 1 + C T SKCM 151509751 + 151509731 151509771 41 TGAGCTCAGATGAGGAATTCGACAGTGTCTACGATCCCTCG TGAGCTCAGATGAGGAATTTGACAGTGTCTACGATCCCTCG < 41bp 0.500165445606485 0.702361671605424 NA NA prediction 0.404392451997878 Functional Gain - CGN ENSG00000143375 CDS Human protein_coding chr1:151509751 chr1:151509750 synonymous SNV . 0 20 hm7G_associated_SNPs_36282 0 0 1 0 1 CGN chr1:151509681 3'AG 151509681 Downstream 70bp 33350 chr1 180914511 180914511 1 + G A UCEC 180914512 + 180914492 180914532 41 CCAGCCTGGCTCGCACCGTGGGCCGCCTGGTGGAGGTGTTC CCAGCCTGGCTCGCACCGTAGGCCGCCTGGTGGAGGTGTTC < 41bp 0.476858044775468 0.702195283567344 NA NA prediction 0.404390567134688 Functional Gain - KIAA1614 ENSG00000135835 CDS Human protein_coding chr1:180914512 chr1:180914511 synonymous SNV . 0 20 hm7G_associated_SNPs_36283 0 0 0 0 1 KIAA1614 chr1:180914439 3'AG 180914439 Downstream 73bp 33351 chr3 9784700 9784700 1 + C T UCEC 9784701 + 9784681 9784721 41 GCAGAACTTGGAGGCTTACCGCTACCTGAATTTTGATGATT GCAGAACTTGGAGGCTTACTGCTACCTGAATTTTGATGATT < 41bp 0.515475493613633 0.717665962257407 NA NA prediction 0.404380937287547 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9784701 chr3:9784700 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36286 0 0 1 0 1 BRPF1 chr3:9784628 3'AG 9784628 Downstream 73bp 33352 chr1 183206518 183206518 1 + C T UCEC 183206519 + 183206499 183206539 41 AAGAGGATCAAACAAAAAGCGGATTCACTCTCAAGCCTGGT AAGAGGATCAAACAAAAAGTGGATTCACTCTCAAGCCTGGT < 41bp 0.542369066634973 0.744558276294741 NA NA prediction 0.404378419319537 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183206519 chr1:183206518 nonsynonymous SNV 0.970 1 20 hm7G_associated_SNPs_36288 0 0 0 0 1 LAMC2 chr1:183206487 3'AG 183206487 Downstream 32bp 33353 chr3 9704013 9704013 1 + G A STAD 9704014 + 9703994 9704034 41 CACCGCAGCAAGATGGCCCGGTGCAGAGGACGGTTTGTCTG CACCGCAGCAAGATGGCCCAGTGCAGAGGACGGTTTGTCTG < 41bp 0.525808771458545 0.727997973328615 NA NA prediction 0.404378403740141 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9704014 chr3:9704013 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_36289 0 0 1 0 2 MTMR14 chr3:9703951 3'AG 9703951 Downstream 63bp 33354 chr3 9704013 9704013 1 + G A STAD 9704014 + 9703994 9704034 41 CACCGCAGCAAGATGGCCCGGTGCAGAGGACGGTTTGTCTG CACCGCAGCAAGATGGCCCAGTGCAGAGGACGGTTTGTCTG < 41bp 0.525808771458545 0.727997973328615 NA NA prediction 0.404378403740141 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9704014 chr3:9704013 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_36289 0 0 1 0 2 MTMR14 chr3:9704059 5'GT 9704059 Upstream 47bp 33355 chr11 62532675 62532675 1 + G A GBM 62532676 + 62532656 62532696 41 TGGACTCTTCACAGAAATTGGGCCCATGTCTTGCTTCATCT TGGACTCTTCACAGAAATTAGGCCCATGTCTTGCTTCATCT < 41bp 0.488047411894003 0.702188572317151 NA NA prediction 0.404377144634301 Functional Gain - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62532676 chr11:62532675 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_36290 0 0 1 0 2 POLR2G chr11:62532654 3'AG 62532654 Downstream 22bp 33356 chr11 62532675 62532675 1 + G A GBM 62532676 + 62532656 62532696 41 TGGACTCTTCACAGAAATTGGGCCCATGTCTTGCTTCATCT TGGACTCTTCACAGAAATTAGGCCCATGTCTTGCTTCATCT < 41bp 0.488047411894003 0.702188572317151 NA NA prediction 0.404377144634301 Functional Gain - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62532676 chr11:62532675 nonsynonymous SNV 0.983 4 20 hm7G_associated_SNPs_36290 0 0 1 0 2 POLR2G chr11:62532704 5'GT 62532704 Upstream 30bp 33357 chr19 6411789 6411789 1 + C T UCEC 6411790 + 6411770 6411810 41 CTCCATGGAGACGATGCTCCGACGAGTGCTACACTGGGGCC CTCCATGGAGACGATGCTCTGACGAGTGCTACACTGGGGCC < 41bp 0.501846476525171 0.704031323915468 NA NA prediction 0.404369694780594 Functional Gain - LOC390877 ENSG00000214347 ncRNA_exonic Human transcribed_unitary_pseudogene chr19:6411790 chr19:6411789 . . 0 20 hm7G_associated_SNPs_36294 0 0 0 0 1 LOC390877 chr19:6411732 3'AG 6411732 Downstream 58bp 33358 chr9 93637015 93637015 1 + C T rs2290890 93637016 + 93636996 93637036 41 AGAGCCCCTACGCGGACCCCGAGGAGATCAGGCCCAAGGAG AGAGCCCCTACGCGGACCCTGAGGAGATCAGGCCCAAGGAG < 41bp 0.551285966090339 0.753470777855589 NA NA prediction 0.404369623530499 Functional Gain - SYK ENSG00000165025 CDS Human protein_coding chr9:93637016 chr9:93637015 synonymous SNV . 0 20 hm7G_associated_SNPs_36295 0 0 0 0 1 SYK chr9:93636954 3'AG 93636954 Downstream 62bp 33359 chr6 117825021 117825021 1 + C T COAD 117825022 + 117825002 117825042 41 ACCCCAATCACACTGTTTGCGAAAAGACAATTACAGTACCA ACCCCAATCACACTGTTTGTGAAAAGACAATTACAGTACCA < 41bp 0.534962864184842 0.73714486140519 NA NA prediction 0.404363994440695 Functional Gain - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117825022 chr6:117825021 synonymous SNV . 0 20 hm7G_associated_SNPs_36296 0 0 1 0 1 DCBLD1 chr6:117824930 3'AG 117824930 Downstream 92bp 33360 chr2 149866713 149866713 1 + C T COAD 149866714 + 149866694 149866734 41 GAGAAGCGGCTGCGTGCCACGGCGGAGCGCGTCAAGGCTCT GAGAAGCGGCTGCGTGCCATGGCGGAGCGCGTCAAGGCTCT < 41bp 0.541384032204367 0.743565048919059 NA NA prediction 0.404362033429384 Functional Gain - KIF5C ENSG00000168280 CDS Human protein_coding chr2:149866714 chr2:149866713 nonsynonymous SNV 0.649 5 20 hm7G_associated_SNPs_36297 0 0 0 0 1 KIF5C chr2:149866649 3'AG 149866649 Downstream 65bp 33361 chr5 176813424 176813424 1 + G A BLCA 176813425 + 176813405 176813445 41 GCTGGCTCATGCTCCCCAGGGAAGGTGGCTGGTGACATCTT GCTGGCTCATGCTCCCCAGAGAAGGTGGCTGGTGACATCTT < 41bp 0.542050259630036 0.744230405014523 NA NA prediction 0.404360290768974 Functional Gain - SLC34A1 ENSG00000131183 CDS Human protein_coding chr5:176813425 chr5:176813424 nonsynonymous SNV 0.899 5 20 hm7G_associated_SNPs_36298 0 0 0 0 1 SLC34A1 chr5:176813424 3'AG 176813424 Downstream 1bp 33362 chr20 62298845 62298845 1 + G A BLCA 62298846 + 62298826 62298866 41 TGCCCTTACTACCTGTCCCGGAACCTGAAGCAGCAAGCCGA TGCCCTTACTACCTGTCCCAGAACCTGAAGCAGCAAGCCGA < 41bp 0.495426710090224 0.702179362166074 NA NA prediction 0.404358724332148 Functional Gain - RTEL1 ENSG00000026036;ENSG00000258366 CDS Human other chr20:62298846 chr20:62298845 nonsynonymous SNV 0.729 4 20 hm7G_associated_SNPs_36300 0 0 1 0 1 RTEL1 chr20:62298906 5'GT 62298906 Upstream 62bp 33363 chr22 40066205 40066205 1 + C T COAD 40066206 + 40066186 40066226 41 ACGGCGGCGTGAGGAGAAGCGGCTGCGGCGCCTGGAGAAGA ACGGCGGCGTGAGGAGAAGTGGCTGCGGCGCCTGGAGAAGA < 41bp 0.49791726115486 0.702179025953053 NA NA prediction 0.404358051906106 Functional Gain - CACNA1I ENSG00000100346 CDS Human protein_coding chr22:40066206 chr22:40066205 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_36301 0 0 0 0 1 CACNA1I chr22:40066235 5'GT 40066235 Upstream 31bp 33364 chr10 26455033 26455033 1 + C T rs140154015 26455034 + 26455014 26455054 41 CAAGTCGAGCGAGGAGCCCCGCATGAGCCCTGACACCTGTG CAAGTCGAGCGAGGAGCCCTGCATGAGCCCTGACACCTGTG < 41bp 0.528980637537295 0.731158477480736 NA NA prediction 0.404355679886882 Functional Gain - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26455034 chr10:26455033 nonsynonymous SNV 0.295 2 20 hm7G_associated_SNPs_36302 1 0 0 0 2 MYO3A chr10:26454996 3'AG 26454996 Downstream 38bp 33365 chr10 26455033 26455033 1 + C T rs140154015 26455034 + 26455014 26455054 41 CAAGTCGAGCGAGGAGCCCCGCATGAGCCCTGACACCTGTG CAAGTCGAGCGAGGAGCCCTGCATGAGCCCTGACACCTGTG < 41bp 0.528980637537295 0.731158477480736 NA NA prediction 0.404355679886882 Functional Gain - MYO3A ENSG00000095777 CDS Human protein_coding chr10:26455034 chr10:26455033 nonsynonymous SNV 0.295 2 20 hm7G_associated_SNPs_36302 1 0 0 0 2 MYO3A chr10:26455107 5'GT 26455107 Upstream 75bp 33366 chr11 2549218 2549218 1 + C T rs146436765 2549219 + 2549199 2549239 41 CCACCATCGAGCAGTATGCCGCCCTGGCCACGGGGACTCTC CCACCATCGAGCAGTATGCTGCCCTGGCCACGGGGACTCTC < 41bp 0.520581122176769 0.722758336518198 NA NA prediction 0.404354428682858 Functional Gain - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2549219 chr11:2549218 synonymous SNV . 0 20 hm7G_associated_SNPs_36303 3 0 0 0 1 KCNQ1 chr11:2549158 3'AG 2549158 Downstream 61bp 33367 chr3 49740947 49740947 1 + G A UCEC 49740948 + 49740928 49740968 41 GGCCTCCTCTCGCACCTGCGGAAGACCCTCAAAGGTGTGTA GGCCTCCTCTCGCACCTGCAGAAGACCCTCAAAGGTGTGTA < 41bp 0.522902051242002 0.725079033307145 NA NA prediction 0.404353964130287 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49740948 chr3:49740947 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_36304 0 0 1 0 2 RNF123 chr3:49740860 3'AG 49740860 Downstream 88bp 33368 chr3 49740947 49740947 1 + G A UCEC 49740948 + 49740928 49740968 41 GGCCTCCTCTCGCACCTGCGGAAGACCCTCAAAGGTGTGTA GGCCTCCTCTCGCACCTGCAGAAGACCCTCAAAGGTGTGTA < 41bp 0.522902051242002 0.725079033307145 NA NA prediction 0.404353964130287 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49740948 chr3:49740947 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_36304 0 0 1 0 2 RNF123 chr3:49740961 5'GT 49740961 Upstream 15bp 33369 chr6 49494272 49494272 1 + G A UCEC 49494273 + 49494253 49494293 41 CTCAACCGGACTTGGTCCCGGGGAGGCAATGAACAATGTCT CTCAACCGGACTTGGTCCCAGGGAGGCAATGAACAATGTCT < 41bp 0.51869229631975 0.720869153476783 NA NA prediction 0.404353714314066 Functional Gain - GLYATL3 ENSG00000203972 CDS Human protein_coding chr6:49494273 chr6:49494272 nonsynonymous SNV 0.075 3 20 hm7G_associated_SNPs_36305 0 0 0 0 1 GLYATL3 chr6:49494201 3'AG 49494201 Downstream 72bp 33370 chr1 205033536 205033536 1 + C T COAD 205033537 + 205033517 205033557 41 CCTTATCCCCTGCCAGCCCCGGGCAGCTCCAAAGGCCGTGG CCTTATCCCCTGCCAGCCCTGGGCAGCTCCAAAGGCCGTGG < 41bp 0.54299885008779 0.745175691639119 NA NA prediction 0.404353683102657 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033537 chr1:205033536 nonsynonymous SNV 0.642 4 20 hm7G_associated_SNPs_36306 0 0 0 0 2 CNTN2 chr1:205033450 3'AG 205033450 Downstream 87bp 33371 chr1 205033536 205033536 1 + C T COAD 205033537 + 205033517 205033557 41 CCTTATCCCCTGCCAGCCCCGGGCAGCTCCAAAGGCCGTGG CCTTATCCCCTGCCAGCCCTGGGCAGCTCCAAAGGCCGTGG < 41bp 0.54299885008779 0.745175691639119 NA NA prediction 0.404353683102657 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205033537 chr1:205033536 nonsynonymous SNV 0.642 4 20 hm7G_associated_SNPs_36306 0 0 0 0 2 CNTN2 chr1:205033600 5'GT 205033600 Upstream 65bp 33372 chr5 145834654 145834654 1 + C T UCEC 145834655 + 145834635 145834675 41 GCCTTGAGGTTCCGAGGTCCGGCTCCCCCACCAAATGCAGT GCCTTGAGGTTCCGAGGTCTGGCTCCCCCACCAAATGCAGT < 41bp 0.524639525290257 0.726813969367649 NA NA prediction 0.404348888154783 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145834655 chr5:145834654 nonsynonymous SNV 0.876 3 20 hm7G_associated_SNPs_36308 0 0 1 0 1 TCERG1 chr5:145834619 3'AG 145834619 Downstream 36bp 33373 chr11 68701933 68701933 1 + C T STAD 68701934 + 68701914 68701954 41 TTCTTTCTTTCCCTCCAGGCGAAGTCCGCCTCGTCAGTTTG TTCTTTCTTTCCCTCCAGGTGAAGTCCGCCTCGTCAGTTTG < 41bp 0.486278973310224 0.70217301346444 NA NA prediction 0.40434602692888 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68701934 chr11:68701933 synonymous SNV . 0 20 hm7G_associated_SNPs_36310 0 0 1 0 2 IGHMBP2 chr11:68701932 3'AG 68701932 Downstream 2bp 33374 chr11 68701933 68701933 1 + C T STAD 68701934 + 68701914 68701954 41 TTCTTTCTTTCCCTCCAGGCGAAGTCCGCCTCGTCAGTTTG TTCTTTCTTTCCCTCCAGGTGAAGTCCGCCTCGTCAGTTTG < 41bp 0.486278973310224 0.70217301346444 NA NA prediction 0.40434602692888 Functional Gain - IGHMBP2 ENSG00000132740 CDS Human protein_coding chr11:68701934 chr11:68701933 synonymous SNV . 0 20 hm7G_associated_SNPs_36310 0 0 1 0 2 IGHMBP2 chr11:68702026 5'GT 68702026 Upstream 94bp 33375 chr4 26422218 26422218 1 + C T UCEC 26422219 + 26422199 26422239 41 TATATCTGACTCAGACAAGCGAAAGCACTTCATGTTGTCTG TATATCTGACTCAGACAAGTGAAAGCACTTCATGTTGTCTG < 41bp 0.503478737887295 0.705650488661119 NA NA prediction 0.404343501547648 Functional Gain - RBPJ ENSG00000168214 CDS Human protein_coding chr4:26422219 chr4:26422218 stopgain 0.978 1 20 hm7G_associated_SNPs_36312 0 0 1 0 1 RBPJ chr4:26422173 3'AG 26422173 Downstream 46bp 33376 chr3 130140020 130140020 1 + C T COAD 130140021 + 130140001 130140041 41 ATTCTGGCATCCCAGGCTACGGTCAGATGGGACGAAAAGGA ATTCTGGCATCCCAGGCTATGGTCAGATGGGACGAAAAGGA < 41bp 0.513902822917719 0.716072721060739 NA NA prediction 0.40433979628604 Functional Gain - COL6A5 ENSG00000172752 CDS Human protein_coding chr3:130140021 chr3:130140020 synonymous SNV . 0 20 hm7G_associated_SNPs_36313 0 0 1 0 2 COL6A5 chr3:130139997 3'AG 130139997 Downstream 24bp 33377 chr3 130140020 130140020 1 + C T COAD 130140021 + 130140001 130140041 41 ATTCTGGCATCCCAGGCTACGGTCAGATGGGACGAAAAGGA ATTCTGGCATCCCAGGCTATGGTCAGATGGGACGAAAAGGA < 41bp 0.513902822917719 0.716072721060739 NA NA prediction 0.40433979628604 Functional Gain - COL6A5 ENSG00000172752 CDS Human protein_coding chr3:130140021 chr3:130140020 synonymous SNV . 0 20 hm7G_associated_SNPs_36313 0 0 1 0 2 COL6A5 chr3:130140047 5'GT 130140047 Upstream 28bp 33378 chr2 74902679 74902679 1 + G A UCEC 74902680 + 74902660 74902700 41 CACCTCCACCGAGCAGTGCGGATCGGAGCTCAGCTCAGCGT CACCTCCACCGAGCAGTGCAGATCGGAGCTCAGCTCAGCGT < 41bp 0.537494943958272 0.739659995174509 NA NA prediction 0.404330102432475 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74902680 chr2:74902679 nonsynonymous SNV 0.848 0 20 hm7G_associated_SNPs_36319 0 0 0 0 2 SEMA4F chr2:74902652 3'AG 74902652 Downstream 28bp 33379 chr2 74902679 74902679 1 + G A UCEC 74902680 + 74902660 74902700 41 CACCTCCACCGAGCAGTGCGGATCGGAGCTCAGCTCAGCGT CACCTCCACCGAGCAGTGCAGATCGGAGCTCAGCTCAGCGT < 41bp 0.537494943958272 0.739659995174509 NA NA prediction 0.404330102432475 Functional Gain - SEMA4F ENSG00000135622 CDS Human protein_coding chr2:74902680 chr2:74902679 nonsynonymous SNV 0.848 0 20 hm7G_associated_SNPs_36319 0 0 0 0 2 SEMA4F chr2:74902761 5'GT 74902761 Upstream 83bp 33380 chr15 101169722 101169722 1 + C T COAD 101169723 + 101169703 101169743 41 TGGCCGGGCCCGCATTGCACGCTTGATGTTAGAATCTGAAT TGGCCGGGCCCGCATTGCATGCTTGATGTTAGAATCTGAAT < 41bp 0.525238051075189 0.727400888447743 NA NA prediction 0.404325674745106 Functional Gain - ASB7 ENSG00000183475 CDS Human protein_coding chr15:101169723 chr15:101169722 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36321 0 0 1 0 1 ASB7 chr15:101169642 3'AG 101169642 Downstream 81bp 33381 chr14 76091051 76091051 1 + G A UCS 76091052 + 76091032 76091072 41 TACTTAGGTTCCATCGCCCGGCTCTTCAAAAATCTCAACTT TACTTAGGTTCCATCGCCCAGCTCTTCAAAAATCTCAACTT < 41bp 0.489112095165566 0.702161974096134 NA NA prediction 0.404323948192268 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76091052 chr14:76091051 nonsynonymous SNV 0.707 0 20 hm7G_associated_SNPs_36322 0 0 1 0 1 FLVCR2 chr14:76091095 5'GT 76091095 Upstream 45bp 33382 chr5 115299005 115299005 1 + C T STAD 115299006 + 115298986 115299026 41 CTACACCGACCAGGGCGAGCGCAGGTAAGGGCTGTACAGCC CTACACCGACCAGGGCGAGTGCAGGTAAGGGCTGTACAGCC < 41bp 0.513426441957483 0.715588229805588 NA NA prediction 0.404323575696209 Functional Gain - LVRN ENSG00000172901 CDS Human protein_coding chr5:115299006 chr5:115299005 nonsynonymous SNV 0.969 2 20 hm7G_associated_SNPs_36323 0 0 0 0 1 LVRN chr5:115299009 5'GT 115299009 Upstream 5bp 33383 chr5 148622095 148622095 1 + C T LGG 148622096 + 148622076 148622116 41 GAAACCCCCGATCTACAAACGGCATGGTATGGTCAGAGGTA GAAACCCCCGATCTACAAATGGCATGGTATGGTCAGAGGTA < 41bp 0.527186086233425 0.729347280654231 NA NA prediction 0.404322388841613 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148622096 chr5:148622095 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_36324 0 0 0 0 2 ABLIM3 chr5:148622054 3'AG 148622054 Downstream 42bp 33384 chr5 148622095 148622095 1 + C T LGG 148622096 + 148622076 148622116 41 GAAACCCCCGATCTACAAACGGCATGGTATGGTCAGAGGTA GAAACCCCCGATCTACAAATGGCATGGTATGGTCAGAGGTA < 41bp 0.527186086233425 0.729347280654231 NA NA prediction 0.404322388841613 Functional Gain - ABLIM3 ENSG00000173210 CDS Human protein_coding chr5:148622096 chr5:148622095 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_36324 0 0 0 0 2 ABLIM3 chr5:148622101 5'GT 148622101 Upstream 7bp 33385 chr19 49867863 49867863 1 + G A GBM 49867864 + 49867844 49867884 41 CCACCTGCCCCCGCAAGGCGGCATCTGCTGGTCCTGCTGCT CCACCTGCCCCCGCAAGGCAGCATCTGCTGGTCCTGCTGCT < 41bp 0.594425469337639 0.796585528352857 NA NA prediction 0.404320118030437 Functional Gain - DKKL1 ENSG00000104901 CDS Human protein_coding chr19:49867864 chr19:49867863 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_36325 0 0 0 0 1 DKKL1 chr19:49867839 3'AG 49867839 Downstream 25bp 33386 chr5 170876252 170876252 1 + G T COAD 170876253 + 170876233 170876273 41 CCGCAAAGGCAAGCTCGTGGGGAAGGTGAGTGATGGTTTGG CCGCAAAGGCAAGCTCGTGTGGAAGGTGAGTGATGGTTTGG < 41bp 0.701717597909065 0.903875963701881 NA NA prediction 0.404316731585631 Functional Gain - FGF18 ENSG00000156427 CDS Human protein_coding chr5:170876253 chr5:170876252 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_36327 0 0 0 0 1 FGF18 chr5:170876257 5'GT 170876257 Upstream 6bp 33387 chr3 138187694 138187694 1 + C T READ 138187695 + 138187675 138187715 41 CTACCTGAATGGTGAATATCGAGCCAAAAAACTCTCCAGGT CTACCTGAATGGTGAATATTGAGCCAAAAAACTCTCCAGGT < 41bp 0.528162999216866 0.730320399321017 NA NA prediction 0.404314800208303 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138187695 chr3:138187694 stopgain 0.995 0 20 hm7G_associated_SNPs_36328 0 0 0 0 2 ESYT3 chr3:138187661 3'AG 138187661 Downstream 34bp 33388 chr3 138187694 138187694 1 + C T READ 138187695 + 138187675 138187715 41 CTACCTGAATGGTGAATATCGAGCCAAAAAACTCTCCAGGT CTACCTGAATGGTGAATATTGAGCCAAAAAACTCTCCAGGT < 41bp 0.528162999216866 0.730320399321017 NA NA prediction 0.404314800208303 Functional Gain - ESYT3 ENSG00000158220 CDS Human protein_coding chr3:138187695 chr3:138187694 stopgain 0.995 0 20 hm7G_associated_SNPs_36328 0 0 0 0 2 ESYT3 chr3:138187727 5'GT 138187727 Upstream 34bp 33389 chr19 17988809 17988809 1 + C T SKCM 17988810 + 17988790 17988830 41 AGGTCGGCCTGTTCCTGATCGTGTCCAGCGCTGCCTGCTGT AGGTCGGCCTGTTCCTGATTGTGTCCAGCGCTGCCTGCTGT < 41bp 0.492786964438516 0.702155772949265 NA NA prediction 0.40431154589853 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17988810 chr19:17988809 synonymous SNV . 0 20 hm7G_associated_SNPs_36329 0 0 0 0 2 SLC5A5 chr19:17988773 3'AG 17988773 Downstream 37bp 33390 chr19 17988809 17988809 1 + C T SKCM 17988810 + 17988790 17988830 41 AGGTCGGCCTGTTCCTGATCGTGTCCAGCGCTGCCTGCTGT AGGTCGGCCTGTTCCTGATTGTGTCCAGCGCTGCCTGCTGT < 41bp 0.492786964438516 0.702155772949265 NA NA prediction 0.40431154589853 Functional Gain - SLC5A5 ENSG00000105641 CDS Human protein_coding chr19:17988810 chr19:17988809 synonymous SNV . 0 20 hm7G_associated_SNPs_36329 0 0 0 0 2 SLC5A5 chr19:17988902 5'GT 17988902 Upstream 94bp 33391 chr13 113899336 113899336 1 + C T UCEC 113899337 + 113899317 113899357 41 TTGGGAAAAGTGCCTCAGTCGATGCTGAAAAGTCTATGTTG TTGGGAAAAGTGCCTCAGTTGATGCTGAAAAGTCTATGTTG < 41bp 0.539430584764824 0.741585691934915 NA NA prediction 0.404310214340182 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113899337 chr13:113899336 synonymous SNV . 0 20 hm7G_associated_SNPs_36330 0 0 1 0 2 CUL4A chr13:113899263 3'AG 113899263 Downstream 74bp 33392 chr13 113899336 113899336 1 + C T UCEC 113899337 + 113899317 113899357 41 TTGGGAAAAGTGCCTCAGTCGATGCTGAAAAGTCTATGTTG TTGGGAAAAGTGCCTCAGTTGATGCTGAAAAGTCTATGTTG < 41bp 0.539430584764824 0.741585691934915 NA NA prediction 0.404310214340182 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113899337 chr13:113899336 synonymous SNV . 0 20 hm7G_associated_SNPs_36330 0 0 1 0 2 CUL4A chr13:113899373 5'GT 113899373 Upstream 38bp 33393 chr5 169535414 169535414 1 + G A UCEC 169535415 + 169535395 169535435 41 CTGAGCCCAGTGACAAGACGGGGCAGAACTCACTGACCTTC CTGAGCCCAGTGACAAGACAGGGCAGAACTCACTGACCTTC < 41bp 0.507764360247933 0.709919164306716 NA NA prediction 0.404309608117566 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535415 chr5:169535414 synonymous SNV . 0 20 hm7G_associated_SNPs_36331 0 0 0 0 1 FOXI1 chr5:169535338 3'AG 169535338 Downstream 77bp 33394 chr8 22473617 22473617 1 + C T ESCA 22473618 + 22473598 22473638 41 TGAGCCTTCCTGAAAAGGTCGTGTCCCCACCTGAACCTGAG TGAGCCTTCCTGAAAAGGTTGTGTCCCCACCTGAACCTGAG < 41bp 0.524352501396576 0.726504588960388 NA NA prediction 0.404304175127624 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22473618 chr8:22473617 synonymous SNV . 0 20 hm7G_associated_SNPs_36333 0 0 1 0 1 CCAR2 chr8:22473525 3'AG 22473525 Downstream 93bp 33395 chr11 123448136 123448136 1 + C T SKCM 123448137 + 123448117 123448157 41 CATCCTCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACC CATCCTCCGGAAGCGGTCTTGCTCGCCAACCCCGCAGAACC < 41bp 0.483522744635512 0.702151305617244 NA NA prediction 0.404302611234488 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123448137 chr11:123448136 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_36334 0 0 0 0 1 GRAMD1B chr11:123448075 3'AG 123448075 Downstream 62bp 33396 chrX 18593495 18593495 1 + C T UCEC 18593496 + 18593476 18593516 41 AATGAAGAAGTCAAAGAAACGACTTTACGAGAGCTTAAAAT AATGAAGAAGTCAAAGAAATGACTTTACGAGAGCTTAAAAT < 41bp 0.528750728957368 0.730899568343868 NA NA prediction 0.404297678772999 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18593496 chrX:18593495 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36335 0 0 0 0 1 CDKL5 chrX:18593474 3'AG 18593474 Downstream 22bp 33397 chr16 84797814 84797814 1 + C T COAD 84797815 + 84797795 84797835 41 GAACAAGACTTCCGTCACCCGCCAGGCGGATTTTGTTCAGA GAACAAGACTTCCGTCACCTGCCAGGCGGATTTTGTTCAGA < 41bp 0.524009675641434 0.726156122844618 NA NA prediction 0.404292894406368 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84797815 chr16:84797814 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_36337 0 0 1 0 1 USP10 chr16:84797869 5'GT 84797869 Upstream 56bp 33398 chr6 107011704 107011704 1 + G A UCEC 107011705 + 107011685 107011725 41 CTGGCTCCAAGCTAGGCCTGGCCCTGGACCAGAATGCTGAC CTGGCTCCAAGCTAGGCCTAGCCCTGGACCAGAATGCTGAC < 41bp 0.518539847593594 0.720684305270731 NA NA prediction 0.404288915354274 Functional Gain - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:107011705 chr6:107011704 synonymous SNV . 0 20 hm7G_associated_SNPs_36340 0 0 1 0 2 CRYBG1 chr6:107011639 3'AG 107011639 Downstream 66bp 33399 chr6 107011704 107011704 1 + G A UCEC 107011705 + 107011685 107011725 41 CTGGCTCCAAGCTAGGCCTGGCCCTGGACCAGAATGCTGAC CTGGCTCCAAGCTAGGCCTAGCCCTGGACCAGAATGCTGAC < 41bp 0.518539847593594 0.720684305270731 NA NA prediction 0.404288915354274 Functional Gain - CRYBG1 ENSG00000112297 CDS Human protein_coding chr6:107011705 chr6:107011704 synonymous SNV . 0 20 hm7G_associated_SNPs_36340 0 0 1 0 2 CRYBG1 chr6:107011801 5'GT 107011801 Upstream 98bp 33400 chr11 6291549 6291549 1 + C T STAD 6291550 + 6291530 6291570 41 GTGCATCGCTGGCCCAGTGCGCGGGTCCGCCAGACCTGGTG GTGCATCGCTGGCCCAGTGTGCGGGTCCGCCAGACCTGGTG < 41bp 0.489962008250163 0.702141092210563 NA NA prediction 0.404282184421126 Functional Gain - CCKBR ENSG00000110148 CDS Human protein_coding chr11:6291550 chr11:6291549 nonsynonymous SNV 0.830 0 20 hm7G_associated_SNPs_36341 0 0 0 0 1 CCKBR chr11:6291567 5'GT 6291567 Upstream 19bp 33401 chr2 111691148 111691148 1 + G T LUAD 111691149 + 111691129 111691169 41 GCTGCAGGCTCTGGTGGCGGGGCTGAAGGCCTACAGCACCT GCTGCAGGCTCTGGTGGCGTGGCTGAAGGCCTACAGCACCT < 41bp 0.352999366078715 0.702139380731557 NA NA prediction 0.404278761463114 Functional Gain - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111691149 chr2:111691148 nonsynonymous SNV 0.618 5 20 hm7G_associated_SNPs_36343 0 0 0 0 2 ACOXL chr2:111691066 3'AG 111691066 Downstream 83bp 33402 chr2 111691148 111691148 1 + G T LUAD 111691149 + 111691129 111691169 41 GCTGCAGGCTCTGGTGGCGGGGCTGAAGGCCTACAGCACCT GCTGCAGGCTCTGGTGGCGTGGCTGAAGGCCTACAGCACCT < 41bp 0.352999366078715 0.702139380731557 NA NA prediction 0.404278761463114 Functional Gain - ACOXL ENSG00000153093 CDS Human protein_coding chr2:111691149 chr2:111691148 nonsynonymous SNV 0.618 5 20 hm7G_associated_SNPs_36343 0 0 0 0 2 ACOXL chr2:111691219 5'GT 111691219 Upstream 72bp 33403 chr7 106513370 106513370 1 + C T rs541883875 106513371 + 106513351 106513391 41 TCTCTGCTGAAAAGTATGACGTCAGTTCCCAAGGTACGGTG TCTCTGCTGAAAAGTATGATGTCAGTTCCCAAGGTACGGTG < 41bp 0.520247896598304 0.722386818196222 NA NA prediction 0.404277843195837 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106513371 chr7:106513370 synonymous SNV . 0 20 hm7G_associated_SNPs_36344 0 0 0 0 1 PIK3CG chr7:106513383 5'GT 106513383 Upstream 14bp 33404 chr18 21059344 21059344 1 + G T UCEC 21059345 + 21059325 21059365 41 ACTCTTCAATGCTGTTTCAGGCTTAAACATCACAGCAGATA ACTCTTCAATGCTGTTTCATGCTTAAACATCACAGCAGATA < 41bp 0.704598581212184 0.906737191099722 NA NA prediction 0.404277219775076 Functional Gain - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21059345 chr18:21059344 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36345 0 0 1 0 3 RIOK3 chr18:21059281 3'AG 21059281 Downstream 64bp 33405 chr18 21059344 21059344 1 + G T UCEC 21059345 + 21059325 21059365 41 ACTCTTCAATGCTGTTTCAGGCTTAAACATCACAGCAGATA ACTCTTCAATGCTGTTTCATGCTTAAACATCACAGCAGATA < 41bp 0.704598581212184 0.906737191099722 NA NA prediction 0.404277219775076 Functional Gain - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21059345 chr18:21059344 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36345 0 0 1 0 3 RIOK3 chr18:21059290 3'AG 21059290 Downstream 55bp 33406 chr18 21059344 21059344 1 + G T UCEC 21059345 + 21059325 21059365 41 ACTCTTCAATGCTGTTTCAGGCTTAAACATCACAGCAGATA ACTCTTCAATGCTGTTTCATGCTTAAACATCACAGCAGATA < 41bp 0.704598581212184 0.906737191099722 NA NA prediction 0.404277219775076 Functional Gain - RIOK3 ENSG00000101782 CDS Human protein_coding chr18:21059345 chr18:21059344 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36345 0 0 1 0 3 RIOK3 chr18:21059388 5'GT 21059388 Upstream 45bp 33407 chr9 33294489 33294489 1 + G T LUSC 33294490 + 33294470 33294510 41 AAATTCTGGTCTAAATTGTGGGACTCAAAGGAGACTAGACT AAATTCTGGTCTAAATTGTTGGACTCAAAGGAGACTAGACT < 41bp 0.373154864175679 0.702138376293002 NA NA prediction 0.404276752586004 Functional Gain - NFX1 ENSG00000086102 CDS Human protein_coding chr9:33294490 chr9:33294489 nonsynonymous SNV 0.727 2 20 hm7G_associated_SNPs_36348 0 0 1 0 1 NFX1 chr9:33294418 3'AG 33294418 Downstream 72bp 33408 chr1 236343179 236343179 1 + G A SKCM 236343180 + 236343160 236343200 41 TCTGCTCCCTCTTTTCCAGGGCTCCTCCGTGTGTCAAGTGA TCTGCTCCCTCTTTTCCAGAGCTCCTCCGTGTGTCAAGTGA < 41bp 0.558933182186306 0.7610709673435 NA NA prediction 0.404275570314388 Functional Gain - GPR137B ENSG00000077585 CDS Human protein_coding chr1:236343180 chr1:236343179 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36349 0 0 0 0 1 GPR137B chr1:236343179 3'AG 236343179 Downstream 1bp 33409 chr1 908644 908644 1 + G A rs537748009 908645 + 908625 908665 41 TGGCAGCAGCCGGTCACCCGGGAGCAAGGCCCGGGCAGAGG TGGCAGCAGCCGGTCACCCAGGAGCAAGGCCCGGGCAGAGG < 41bp 0.593969610494881 0.79610678638303 NA NA prediction 0.404274351776298 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:908645 chr1:908644 nonsynonymous SNV 0.257 0 20 hm7G_associated_SNPs_36350 0 0 0 0 2 PLEKHN1 chr1:908566 3'AG 908566 Downstream 79bp 33410 chr1 908644 908644 1 + G A rs537748009 908645 + 908625 908665 41 TGGCAGCAGCCGGTCACCCGGGAGCAAGGCCCGGGCAGAGG TGGCAGCAGCCGGTCACCCAGGAGCAAGGCCCGGGCAGAGG < 41bp 0.593969610494881 0.79610678638303 NA NA prediction 0.404274351776298 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:908645 chr1:908644 nonsynonymous SNV 0.257 0 20 hm7G_associated_SNPs_36350 0 0 0 0 2 PLEKHN1 chr1:908706 5'GT 908706 Upstream 63bp 33411 chr13 33638014 33638014 1 + C T STAD 33638015 + 33637995 33638035 41 TGGATGGTATCAATCTTTGCGGATACTTTGCTTATTCGTTT TGGATGGTATCAATCTTTGTGGATACTTTGCTTATTCGTTT < 41bp 0.522705425174211 0.724842177625608 NA NA prediction 0.404273504902795 Functional Gain - KL ENSG00000133116 CDS Human protein_coding chr13:33638015 chr13:33638014 synonymous SNV . 0 20 hm7G_associated_SNPs_36352 0 0 0 0 1 KL chr13:33637986 3'AG 33637986 Downstream 29bp 33412 chr14 23240326 23240326 1 + C T STAD 23240327 + 23240307 23240347 41 TGTACTTAAAATCCCCCAGCGTGTTGTACATGACCTGGACA TGTACTTAAAATCCCCCAGTGTGTTGTACATGACCTGGACA < 41bp 0.518318012249013 0.720454529798622 NA NA prediction 0.404273035099219 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240327 chr14:23240326 nonsynonymous SNV 0.386 4 20 hm7G_associated_SNPs_36353 0 0 1 1 2 OXA1L chr14:23240227 3'AG 23240227 Downstream 100bp 33413 chr14 23240326 23240326 1 + C T STAD 23240327 + 23240307 23240347 41 TGTACTTAAAATCCCCCAGCGTGTTGTACATGACCTGGACA TGTACTTAAAATCCCCCAGTGTGTTGTACATGACCTGGACA < 41bp 0.518318012249013 0.720454529798622 NA NA prediction 0.404273035099219 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23240327 chr14:23240326 nonsynonymous SNV 0.386 4 20 hm7G_associated_SNPs_36353 0 0 1 1 2 OXA1L chr14:23240389 5'GT 23240389 Upstream 64bp 33414 chr16 90160956 90160956 1 + C T COAD 90160957 + 90160937 90160977 41 GTGGCAGGTACGTGCCTCGCGCTGTGCTCGTGGATCTGGAG GTGGCAGGTACGTGCCTCGTGCTGTGCTCGTGGATCTGGAG < 41bp 0.497999612974174 0.702136001329001 NA NA prediction 0.404272002658001 Functional Gain - PRDM7;FAM157B ENSG00000261812 CDS Human transcribed_unprocessed_pseudogene chr16:90160957 chr16:90160956 unknown . 0 20 hm7G_associated_SNPs_36354 0 0 0 0 1 PRDM7;FAM157B chr16:90160937 3'AG 90160937 Downstream 20bp 33415 chr17 57046944 57046944 1 + G T LUAD 57046945 + 57046925 57046965 41 CAGTGTTTGATGGCCATGGGGGAGTAGATGCTGCTATTTAT CAGTGTTTGATGGCCATGGTGGAGTAGATGCTGCTATTTAT < 41bp 0.362669706123981 0.702135800866043 NA NA prediction 0.404271601732085 Functional Gain - PPM1E ENSG00000175175 CDS Human protein_coding chr17:57046945 chr17:57046944 synonymous SNV . 0 20 hm7G_associated_SNPs_36355 0 0 0 0 1 PPM1E chr17:57046900 3'AG 57046900 Downstream 45bp 33416 chr1 202266680 202266680 1 + G A rs143648261 202266681 + 202266661 202266701 41 GAGTTCCCTGTGGCCATCCGGACCCTGGGCAGACTGCAGGA GAGTTCCCTGTGGCCATCCAGACCCTGGGCAGACTGCAGGA < 41bp 0.498641583929187 0.70213439299032 NA NA prediction 0.404268785980641 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202266681 chr1:202266680 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_36356 0 0 0 1 2 LGR6 chr1:202266636 3'AG 202266636 Downstream 45bp 33417 chr1 202266680 202266680 1 + G A rs143648261 202266681 + 202266661 202266701 41 GAGTTCCCTGTGGCCATCCGGACCCTGGGCAGACTGCAGGA GAGTTCCCTGTGGCCATCCAGACCCTGGGCAGACTGCAGGA < 41bp 0.498641583929187 0.70213439299032 NA NA prediction 0.404268785980641 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202266681 chr1:202266680 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_36356 0 0 0 1 2 LGR6 chr1:202266704 5'GT 202266704 Upstream 25bp 33418 chr11 125300009 125300009 1 + G T LUAD 125300010 + 125299990 125300030 41 CGGGGGTGCTGCAGCAGCAGGGCGGTGCCCCAGGGACAAAC CGGGGGTGCTGCAGCAGCATGGCGGTGCCCCAGGGACAAAC < 41bp 0.34465006910357 0.702133330647084 NA NA prediction 0.404266661294167 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125300010 chr11:125300009 nonsynonymous SNV 0.621 2 20 hm7G_associated_SNPs_36359 0 0 0 0 1 PKNOX2 chr11:125300037 5'GT 125300037 Upstream 29bp 33419 chr22 24491986 24491986 1 + G T UCEC 24491987 + 24491967 24492007 41 TGGTCAACTTTATGAAGGAGGCTGCAGAAGGACCCTTTGCC TGGTCAACTTTATGAAGGATGCTGCAGAAGGACCCTTTGCC < 41bp 0.352697675378118 0.702129027171255 NA NA prediction 0.40425805434251 Functional Gain - CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24491987 chr22:24491986 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_36361 0 0 1 0 2 CABIN1 chr22:24491894 3'AG 24491894 Downstream 93bp 33420 chr22 24491986 24491986 1 + G T UCEC 24491987 + 24491967 24492007 41 TGGTCAACTTTATGAAGGAGGCTGCAGAAGGACCCTTTGCC TGGTCAACTTTATGAAGGATGCTGCAGAAGGACCCTTTGCC < 41bp 0.352697675378118 0.702129027171255 NA NA prediction 0.40425805434251 Functional Gain - CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24491987 chr22:24491986 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_36361 0 0 1 0 2 CABIN1 chr22:24492045 5'GT 24492045 Upstream 60bp 33421 chr11 46332691 46332691 1 + C T UCEC 46332692 + 46332672 46332712 41 AGCCCTGTCAGGCCCATGGCGCGCTCCTCCACGGCCATCTC AGCCCTGTCAGGCCCATGGTGCGCTCCTCCACGGCCATCTC < 41bp 0.531273094379846 0.733401797160998 NA NA prediction 0.404257405562302 Functional Gain - CREB3L1 ENSG00000157613 CDS Human protein_coding chr11:46332692 chr11:46332691 nonsynonymous SNV 0.980 1 20 hm7G_associated_SNPs_36362 0 0 0 0 1 CREB3L1 chr11:46332740 5'GT 46332740 Upstream 50bp 33422 chrX 49179682 49179682 1 + C T CHOL 49179683 + 49179663 49179703 41 AGTGTGAAATATGAGTTGGCGAGGAAGATCGACCTATTATT AGTGTGAAATATGAGTTGGTGAGGAAGATCGACCTATTATT < 41bp 0.505173333372483 0.707302034149207 NA NA prediction 0.404257401553448 Functional Gain - GAGE12J ENSG00000224659 CDS Human protein_coding chrX:49179683 chrX:49179682 stopgain 0.169 0 20 hm7G_associated_SNPs_36363 0 0 0 0 1 GAGE12J chrX:49179756 5'GT 49179756 Upstream 75bp 33423 chr22 40805687 40805687 1 + C T rs377050399 40805688 + 40805668 40805708 41 GGGCTGCCCTGTTTGCAGGCGCAGCAGCCCCTGAAGGAGGG GGGCTGCCCTGTTTGCAGGTGCAGCAGCCCCTGAAGGAGGG < 41bp 0.520344648663172 0.722472811206084 NA NA prediction 0.404256325085824 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40805688 chr22:40805687 nonsynonymous SNV 0.689 1 20 hm7G_associated_SNPs_36364 0 0 0 0 1 SGSM3 chr22:40805686 3'AG 40805686 Downstream 2bp 33424 chr16 2849523 2849523 1 + G A UCEC 2849524 + 2849504 2849544 41 ACCTTCAACTTCGTGCACCGGCCGGACTGCTGGGTGACCGG ACCTTCAACTTCGTGCACCAGCCGGACTGCTGGGTGACCGG < 41bp 0.518787301761719 0.720915038298975 NA NA prediction 0.404255473074512 Functional Gain - PRSS41 ENSG00000215148 ncRNA_exonic Human protein_coding chr16:2849524 chr16:2849523 . . 0 20 hm7G_associated_SNPs_36366 0 0 0 0 1 PRSS41 chr16:2849570 5'GT 2849570 Upstream 48bp 33425 chr11 119025526 119025526 1 + C T HNSC 119025527 + 119025507 119025547 41 CTGATGTCGTGCTCCCACACGAGGACAGCCCTGCTCTCTGG CTGATGTCGTGCTCCCACATGAGGACAGCCCTGCTCTCTGG < 41bp 0.548520991784614 0.750648637104516 NA NA prediction 0.404255290639805 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025527 chr11:119025526 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36367 0 0 0 0 2 ABCG4 chr11:119025480 3'AG 119025480 Downstream 47bp 33426 chr11 119025526 119025526 1 + C T HNSC 119025527 + 119025507 119025547 41 CTGATGTCGTGCTCCCACACGAGGACAGCCCTGCTCTCTGG CTGATGTCGTGCTCCCACATGAGGACAGCCCTGCTCTCTGG < 41bp 0.548520991784614 0.750648637104516 NA NA prediction 0.404255290639805 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119025527 chr11:119025526 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36367 0 0 0 0 2 ABCG4 chr11:119025625 5'GT 119025625 Upstream 100bp 33427 chr19 54515275 54515275 1 + G A STAD 54515276 + 54515256 54515296 41 TGCTGCAGAGAGTCAGCCCGGAGCCTCCCCCGGCCCCACGC TGCTGCAGAGAGTCAGCCCAGAGCCTCCCCCGGCCCCACGC < 41bp 0.483245317698568 0.702126851887785 NA NA prediction 0.404253703775571 Functional Gain - CACNG6 ENSG00000130433 CDS Human protein_coding chr19:54515276 chr19:54515275 synonymous SNV . 0 20 hm7G_associated_SNPs_36368 0 0 0 0 1 CACNG6 chr19:54515205 3'AG 54515205 Downstream 71bp 33428 chr5 112926777 112926777 1 + C T READ 112926778 + 112926758 112926798 41 AAGACCAAACATGCCTGTTCGATACTTCATAATGAAGAGTA AAGACCAAACATGCCTGTTTGATACTTCATAATGAAGAGTA < 41bp 0.493552606368691 0.702124627901264 NA NA prediction 0.404249255802528 Functional Gain - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112926778 chr5:112926777 stopgain 0.997 1 20 hm7G_associated_SNPs_36370 0 0 1 0 1 YTHDC2 chr5:112926738 3'AG 112926738 Downstream 40bp 33429 chr18 6868225 6868225 1 + C T COAD 6868226 + 6868206 6868246 41 GGACAGCCAGTTCAGAATGCGATAAGTGGTGAGCGGCATGC GGACAGCCAGTTCAGAATGTGATAAGTGGTGAGCGGCATGC < 41bp 0.53052969401729 0.732653914165881 NA NA prediction 0.404248440297183 Functional Gain - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6868226 chr18:6868225 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36371 0 0 0 0 2 ARHGAP28 chr18:6868149 3'AG 6868149 Downstream 77bp 33430 chr18 6868225 6868225 1 + C T COAD 6868226 + 6868206 6868246 41 GGACAGCCAGTTCAGAATGCGATAAGTGGTGAGCGGCATGC GGACAGCCAGTTCAGAATGTGATAAGTGGTGAGCGGCATGC < 41bp 0.53052969401729 0.732653914165881 NA NA prediction 0.404248440297183 Functional Gain - ARHGAP28 ENSG00000088756 CDS Human protein_coding chr18:6868226 chr18:6868225 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36371 0 0 0 0 2 ARHGAP28 chr18:6868233 5'GT 6868233 Upstream 9bp 33431 chr16 19058478 19058478 1 + C T COAD 19058479 + 19058459 19058499 41 ACGTCCTGGGGATAGTTTACGGGCAAACCATCTGCTGGATC ACGTCCTGGGGATAGTTTATGGGCAAACCATCTGCTGGATC < 41bp 0.562903778169767 0.765027739003721 NA NA prediction 0.404247921667907 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19058479 chr16:19058478 synonymous SNV . 0 20 hm7G_associated_SNPs_36373 0 0 0 0 2 TMC7 chr16:19058385 3'AG 19058385 Downstream 94bp 33432 chr16 19058478 19058478 1 + C T COAD 19058479 + 19058459 19058499 41 ACGTCCTGGGGATAGTTTACGGGCAAACCATCTGCTGGATC ACGTCCTGGGGATAGTTTATGGGCAAACCATCTGCTGGATC < 41bp 0.562903778169767 0.765027739003721 NA NA prediction 0.404247921667907 Functional Gain - TMC7 ENSG00000170537 CDS Human protein_coding chr16:19058479 chr16:19058478 synonymous SNV . 0 20 hm7G_associated_SNPs_36373 0 0 0 0 2 TMC7 chr16:19058571 5'GT 19058571 Upstream 94bp 33433 chr13 113742683 113742683 1 + C T READ 113742684 + 113742664 113742704 41 CGCGTGGGTGAATGAAATTCGGAAAGTGCTGACCAGCCAGC CGCGTGGGTGAATGAAATTTGGAAAGTGCTGACCAGCCAGC < 41bp 0.551542818930314 0.753666546988329 NA NA prediction 0.40424745611603 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113742684 chr13:113742683 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_36374 0 0 1 0 2 MCF2L chr13:113742641 3'AG 113742641 Downstream 43bp 33434 chr13 113742683 113742683 1 + C T READ 113742684 + 113742664 113742704 41 CGCGTGGGTGAATGAAATTCGGAAAGTGCTGACCAGCCAGC CGCGTGGGTGAATGAAATTTGGAAAGTGCTGACCAGCCAGC < 41bp 0.551542818930314 0.753666546988329 NA NA prediction 0.40424745611603 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113742684 chr13:113742683 nonsynonymous SNV 0.949 4 20 hm7G_associated_SNPs_36374 0 0 1 0 2 MCF2L chr13:113742719 5'GT 113742719 Upstream 37bp 33435 chr10 121674307 121674307 1 + C T rs575485372 121674308 + 121674288 121674328 41 TGGACCTGTGTGTGACTTACGCTTTAGGAGCATTATTGAGT TGGACCTGTGTGTGACTTATGCTTTAGGAGCATTATTGAGT < 41bp 0.546964783927189 0.749088367707027 NA NA prediction 0.404247167559676 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121674308 chr10:121674307 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36375 0 0 1 0 2 SEC23IP chr10:121674242 3'AG 121674242 Downstream 66bp 33436 chr10 121674307 121674307 1 + C T rs575485372 121674308 + 121674288 121674328 41 TGGACCTGTGTGTGACTTACGCTTTAGGAGCATTATTGAGT TGGACCTGTGTGTGACTTATGCTTTAGGAGCATTATTGAGT < 41bp 0.546964783927189 0.749088367707027 NA NA prediction 0.404247167559676 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121674308 chr10:121674307 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36375 0 0 1 0 2 SEC23IP chr10:121674331 5'GT 121674331 Upstream 25bp 33437 chr2 101183090 101183090 1 + G T LUSC 101183091 + 101183071 101183111 41 GCATCCTCCAGCAGTCAGTGGGTGAGTTCACTCGCTTTCCT GCATCCTCCAGCAGTCAGTTGGTGAGTTCACTCGCTTTCCT < 41bp 0.372408952475864 0.702120681267892 NA NA prediction 0.404241362535784 Functional Gain - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101183091 chr2:101183090 synonymous SNV . 0 20 hm7G_associated_SNPs_36377 0 0 1 0 1 PDCL3 chr2:101183091 5'GT 101183091 Upstream 2bp 33438 chr5 72419180 72419180 1 + G T LIHC 72419181 + 72419161 72419201 41 CACATCCCACCCTGCCTCCGGGAAGGGGCCTCTCCTGGACA CACATCCCACCCTGCCTCCTGGAAGGGGCCTCTCCTGGACA < 41bp 0.609024265357922 0.811144702449351 NA NA prediction 0.404240874182859 Functional Gain - TMEM171 ENSG00000157111 UTR5 Human protein_coding chr5:72419181 chr5:72419180 . . 0 20 hm7G_associated_SNPs_36378 0 0 0 0 1 TMEM171 chr5:72419133 3'AG 72419133 Downstream 48bp 33439 chr11 61503043 61503043 1 + C T UCEC 61503044 + 61503024 61503064 41 GCCTCCTAGGTCTATGAAACGCCCTTCTACGTGGCGGTGGA GCCTCCTAGGTCTATGAAATGCCCTTCTACGTGGCGGTGGA < 41bp 0.533390517689162 0.73551027619331 NA NA prediction 0.404239517008295 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503044 chr11:61503043 nonsynonymous SNV 0.945 4 20 hm7G_associated_SNPs_36379 0 0 0 0 2 DAGLA chr11:61503033 3'AG 61503033 Downstream 11bp 33440 chr11 61503043 61503043 1 + C T UCEC 61503044 + 61503024 61503064 41 GCCTCCTAGGTCTATGAAACGCCCTTCTACGTGGCGGTGGA GCCTCCTAGGTCTATGAAATGCCCTTCTACGTGGCGGTGGA < 41bp 0.533390517689162 0.73551027619331 NA NA prediction 0.404239517008295 Functional Gain - DAGLA ENSG00000134780 CDS Human protein_coding chr11:61503044 chr11:61503043 nonsynonymous SNV 0.945 4 20 hm7G_associated_SNPs_36379 0 0 0 0 2 DAGLA chr11:61503116 5'GT 61503116 Upstream 74bp 33441 chr22 40417900 40417900 1 + C T PAAD 40417901 + 40417881 40417921 41 TGGCCAGCTCTGTCTCCACCGAGACCTCTGAAGTGGAGTTT TGGCCAGCTCTGTCTCCACTGAGACCTCTGAAGTGGAGTTT < 41bp 0.49446053338339 0.70211886169255 NA NA prediction 0.404237723385099 Functional Gain - FAM83F ENSG00000133477 CDS Human protein_coding chr22:40417901 chr22:40417900 synonymous SNV . 0 20 hm7G_associated_SNPs_36380 0 0 0 0 1 FAM83F chr22:40417967 5'GT 40417967 Upstream 68bp 33442 chr3 183525864 183525864 1 + C T UCEC 183525865 + 183525845 183525885 41 CTCCACAGGAACGTGTATGCGTCCGTGGTGGAGGACATGAT CTCCACAGGAACGTGTATGTGTCCGTGGTGGAGGACATGAT < 41bp 0.529699213918113 0.731815917357658 NA NA prediction 0.404233406879089 Functional Gain - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183525865 chr3:183525864 nonsynonymous SNV 0.933 2 20 hm7G_associated_SNPs_36381 0 0 1 0 2 YEATS2 chr3:183525818 3'AG 183525818 Downstream 47bp 33443 chr3 183525864 183525864 1 + C T UCEC 183525865 + 183525845 183525885 41 CTCCACAGGAACGTGTATGCGTCCGTGGTGGAGGACATGAT CTCCACAGGAACGTGTATGTGTCCGTGGTGGAGGACATGAT < 41bp 0.529699213918113 0.731815917357658 NA NA prediction 0.404233406879089 Functional Gain - YEATS2 ENSG00000163872 CDS Human protein_coding chr3:183525865 chr3:183525864 nonsynonymous SNV 0.933 2 20 hm7G_associated_SNPs_36381 0 0 1 0 2 YEATS2 chr3:183525892 5'GT 183525892 Upstream 29bp 33444 chr15 74564064 74564064 1 + C T GBM 74564065 + 74564045 74564085 41 TCTTTCTCCGGGGAGTCAACGAGCCCCTGGCCAACAACCCC TCTTTCTCCGGGGAGTCAATGAGCCCCTGGCCAACAACCCC < 41bp 0.533873693897382 0.735990391882813 NA NA prediction 0.404233395970862 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74564065 chr15:74564064 synonymous SNV . 0 20 hm7G_associated_SNPs_36382 0 0 0 0 2 CCDC33 chr15:74564044 3'AG 74564044 Downstream 21bp 33445 chr15 74564064 74564064 1 + C T GBM 74564065 + 74564045 74564085 41 TCTTTCTCCGGGGAGTCAACGAGCCCCTGGCCAACAACCCC TCTTTCTCCGGGGAGTCAATGAGCCCCTGGCCAACAACCCC < 41bp 0.533873693897382 0.735990391882813 NA NA prediction 0.404233395970862 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74564065 chr15:74564064 synonymous SNV . 0 20 hm7G_associated_SNPs_36382 0 0 0 0 2 CCDC33 chr15:74564135 5'GT 74564135 Upstream 72bp 33446 chr2 37035707 37035707 1 + C T UCEC 37035708 + 37035688 37035728 41 CTCTGGTGAAGCGGGTCTGCGACACTGACCGCCTGGCCTGC CTCTGGTGAAGCGGGTCTGTGACACTGACCGCCTGGCCTGC < 41bp 0.519492426598501 0.721608877673899 NA NA prediction 0.404232902150797 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:37035708 chr2:37035707 synonymous SNV . 0 20 hm7G_associated_SNPs_36383 0 0 0 0 1 VIT chr2:37035615 3'AG 37035615 Downstream 93bp 33447 chr17 45299181 45299181 1 + G T LUAD 45299182 + 45299162 45299202 41 ACAAGGAGAGCAATGGCACGGTCATGGGTGCTGAGCTTCGG ACAAGGAGAGCAATGGCACTGTCATGGGTGCTGAGCTTCGG < 41bp 0.710081866466061 0.912197440866283 NA NA prediction 0.404231148800446 Functional Gain - MYL4 ENSG00000198336 CDS Human protein_coding chr17:45299182 chr17:45299181 synonymous SNV . 0 20 hm7G_associated_SNPs_36384 0 0 1 0 1 MYL4 chr17:45299221 5'GT 45299221 Upstream 41bp 33448 chr19 54444741 54444741 1 + G A UCEC 54444742 + 54444722 54444762 41 AGGCCTCTCCTTGGTGGTGGGCTTGGTTCTTTACATCTCCA AGGCCTCTCCTTGGTGGTGAGCTTGGTTCTTTACATCTCCA < 41bp 0.571627316411555 0.773740076177662 NA NA prediction 0.404225519532214 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54444742 chr19:54444741 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_36385 0 0 0 0 1 CACNG7 chr19:54444724 3'AG 54444724 Downstream 18bp 33449 chr4 128930313 128930313 1 + C T UCEC 128930314 + 128930294 128930334 41 TCCTATGATTAAAGAAGCCCGAATGGCTTCTTTATTGTTAG TCCTATGATTAAAGAAGCCTGAATGGCTTCTTTATTGTTAG < 41bp 0.52984090921876 0.731953637589005 NA NA prediction 0.404225456740491 Functional Gain - ABHD18 ENSG00000164074 CDS Human protein_coding chr4:128930314 chr4:128930313 stopgain 0.997 1 20 hm7G_associated_SNPs_36386 0 0 1 0 1 ABHD18 chr4:128930262 3'AG 128930262 Downstream 52bp 33450 chr2 27729357 27729357 1 + G A SKCM 27729358 + 27729338 27729378 41 TTTCTCCCAGATGCCTCCTGGAAATCTTGCGGACATTTGAG TTTCTCCCAGATGCCTCCTAGAAATCTTGCGGACATTTGAG < 41bp 0.527091122737825 0.729203386835935 NA NA prediction 0.404224528196219 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27729358 chr2:27729357 synonymous SNV . 0 20 hm7G_associated_SNPs_36387 0 0 1 0 2 GCKR chr2:27729348 3'AG 27729348 Downstream 10bp 33451 chr2 27729357 27729357 1 + G A SKCM 27729358 + 27729338 27729378 41 TTTCTCCCAGATGCCTCCTGGAAATCTTGCGGACATTTGAG TTTCTCCCAGATGCCTCCTAGAAATCTTGCGGACATTTGAG < 41bp 0.527091122737825 0.729203386835935 NA NA prediction 0.404224528196219 Functional Gain - GCKR ENSG00000084734 CDS Human protein_coding chr2:27729358 chr2:27729357 synonymous SNV . 0 20 hm7G_associated_SNPs_36387 0 0 1 0 2 GCKR chr2:27729446 5'GT 27729446 Upstream 90bp 33452 chr5 60822115 60822115 1 + C T rs116036211 60822116 + 60822096 60822136 41 TGCAAGAGTGGACGCATTACGTTCTCATGGGTACCCCAGAG TGCAAGAGTGGACGCATTATGTTCTCATGGGTACCCCAGAG < 41bp 0.50898825381666 0.711100289285348 NA NA prediction 0.404224070937377 Functional Gain - ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60822116 chr5:60822115 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36389 0 0 1 0 1 ZSWIM6 chr5:60822077 3'AG 60822077 Downstream 39bp 33453 chrX 55028837 55028837 1 + G A UCEC 55028838 + 55028818 55028858 41 GCTCTGGATAGTGAGGGCAGGGCCCTCCTCACACAGCATAA GCTCTGGATAGTGAGGGCAAGGCCCTCCTCACACAGCATAA < 41bp 0.544275798675078 0.746385655643259 NA NA prediction 0.404219713936362 Functional Gain - APEX2 ENSG00000169188 CDS Human protein_coding chrX:55028838 chrX:55028837 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36390 0 0 1 0 1 APEX2 chrX:55028864 5'GT 55028864 Upstream 28bp 33454 chr1 116574156 116574156 1 + C T UCEC 116574157 + 116574137 116574177 41 AAGTTTCCTGGATCTCTTTCGTTACCGGGTCCTGTTAGGAC AAGTTTCCTGGATCTCTTTTGTTACCGGGTCCTGTTAGGAC < 41bp 0.529705629289489 0.731815240617515 NA NA prediction 0.404219222656053 Functional Gain - SLC22A15 ENSG00000163393 CDS Human protein_coding chr1:116574157 chr1:116574156 nonsynonymous SNV 0.983 0 20 hm7G_associated_SNPs_36392 0 0 0 0 1 SLC22A15 chr1:116574202 5'GT 116574202 Upstream 47bp 33455 chr4 184628024 184628024 1 + C T COAD 184628025 + 184628005 184628045 41 ATCACCTACAGAATAAGACCGACTTAGTTCAAGATGTAGAA ATCACCTACAGAATAAGACTGACTTAGTTCAAGATGTAGAA < 41bp 0.525415392777621 0.727524954412909 NA NA prediction 0.404219123270577 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184628025 chr4:184628024 synonymous SNV . 0 20 hm7G_associated_SNPs_36393 0 0 0 0 2 TRAPPC11 chr4:184627960 3'AG 184627960 Downstream 65bp 33456 chr4 184628024 184628024 1 + C T COAD 184628025 + 184628005 184628045 41 ATCACCTACAGAATAAGACCGACTTAGTTCAAGATGTAGAA ATCACCTACAGAATAAGACTGACTTAGTTCAAGATGTAGAA < 41bp 0.525415392777621 0.727524954412909 NA NA prediction 0.404219123270577 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184628025 chr4:184628024 synonymous SNV . 0 20 hm7G_associated_SNPs_36393 0 0 0 0 2 TRAPPC11 chr4:184628093 5'GT 184628093 Upstream 70bp 33457 chr18 59899594 59899594 1 + C T UCEC 59899595 + 59899575 59899615 41 TTGCAGACAGTGAAAAAAGCGTTATGTTAATGCTGGGACGC TTGCAGACAGTGAAAAAAGTGTTATGTTAATGCTGGGACGC < 41bp 0.525813731195778 0.727923005684951 NA NA prediction 0.404218548978346 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59899595 chr18:59899594 synonymous SNV . 0 20 hm7G_associated_SNPs_36394 0 0 0 0 2 KIAA1468 chr18:59899565 3'AG 59899565 Downstream 30bp 33458 chr18 59899594 59899594 1 + C T UCEC 59899595 + 59899575 59899615 41 TTGCAGACAGTGAAAAAAGCGTTATGTTAATGCTGGGACGC TTGCAGACAGTGAAAAAAGTGTTATGTTAATGCTGGGACGC < 41bp 0.525813731195778 0.727923005684951 NA NA prediction 0.404218548978346 Functional Gain - KIAA1468 ENSG00000134444 CDS Human protein_coding chr18:59899595 chr18:59899594 synonymous SNV . 0 20 hm7G_associated_SNPs_36394 0 0 0 0 2 KIAA1468 chr18:59899660 5'GT 59899660 Upstream 67bp 33459 chr5 154190829 154190829 1 + C T SKCM 154190830 + 154190810 154190850 41 TGGTTTGGAGTGCCTTTTTCGATACTACAGTTATGGCCTGG TGGTTTGGAGTGCCTTTTTTGATACTACAGTTATGGCCTGG < 41bp 0.481703073709666 0.702109233067849 NA NA prediction 0.404218466135699 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154190830 chr5:154190829 stopgain 1.000 1 20 hm7G_associated_SNPs_36395 0 0 1 0 2 LARP1 chr5:154190807 3'AG 154190807 Downstream 23bp 33460 chr5 154190829 154190829 1 + C T SKCM 154190830 + 154190810 154190850 41 TGGTTTGGAGTGCCTTTTTCGATACTACAGTTATGGCCTGG TGGTTTGGAGTGCCTTTTTTGATACTACAGTTATGGCCTGG < 41bp 0.481703073709666 0.702109233067849 NA NA prediction 0.404218466135699 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154190830 chr5:154190829 stopgain 1.000 1 20 hm7G_associated_SNPs_36395 0 0 1 0 2 LARP1 chr5:154190916 5'GT 154190916 Upstream 88bp 33461 chr10 45479559 45479559 1 + C T SKCM 45479560 + 45479540 45479580 41 GAGAGTTCCACAGACAGCTCGGGTAAGCGGAGCCCGCAAGC GAGAGTTCCACAGACAGCTTGGGTAAGCGGAGCCCGCAAGC < 41bp 0.513002833946858 0.715110274498773 NA NA prediction 0.40421488110383 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45479560 chr10:45479559 nonsynonymous SNV 0.621 0 20 hm7G_associated_SNPs_36397 0 0 1 0 2 RASSF4 chr10:45479470 3'AG 45479470 Downstream 90bp 33462 chr10 45479559 45479559 1 + C T SKCM 45479560 + 45479540 45479580 41 GAGAGTTCCACAGACAGCTCGGGTAAGCGGAGCCCGCAAGC GAGAGTTCCACAGACAGCTTGGGTAAGCGGAGCCCGCAAGC < 41bp 0.513002833946858 0.715110274498773 NA NA prediction 0.40421488110383 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45479560 chr10:45479559 nonsynonymous SNV 0.621 0 20 hm7G_associated_SNPs_36397 0 0 1 0 2 RASSF4 chr10:45479561 5'GT 45479561 Upstream 3bp 33463 chr17 48356274 48356274 1 + C T PRAD 48356275 + 48356255 48356295 41 AGACAGCCCAGTGGATTGCCGGGGGCCCCTGGAACTGCCCT AGACAGCCCAGTGGATTGCTGGGGGCCCCTGGAACTGCCCT < 41bp 0.50449378568514 0.706599343937689 NA NA prediction 0.404211116505097 Functional Gain - TMEM92 ENSG00000167105 CDS Human protein_coding chr17:48356275 chr17:48356274 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_36398 0 0 0 0 1 TMEM92 chr17:48356357 5'GT 48356357 Upstream 84bp 33464 chr16 30506069 30506069 1 + C T BLCA 30506070 + 30506050 30506090 41 GTGGGGAGCTGTGTGGCGTCGACGTGGACCAAGATGGGGAG GTGGGGAGCTGTGTGGCGTTGACGTGGACCAAGATGGGGAG < 41bp 0.561528465499419 0.76363293406309 NA NA prediction 0.404208937127342 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30506070 chr16:30506069 synonymous SNV . 0 20 hm7G_associated_SNPs_36399 0 0 0 0 1 ITGAL chr16:30506034 3'AG 30506034 Downstream 36bp 33465 chr11 64054328 64054328 1 + C T STAD 64054329 + 64054309 64054349 41 CTGCAGTTCTTCACCTTGACGCTTATGAACCTCTACTTTGC CTGCAGTTCTTCACCTTGATGCTTATGAACCTCTACTTTGC < 41bp 0.522573848455939 0.72467823273744 NA NA prediction 0.404208768563002 Functional Gain - GPR137 ENSG00000173264 CDS Human protein_coding chr11:64054329 chr11:64054328 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36400 0 0 1 0 1 GPR137 chr11:64054353 5'GT 64054353 Upstream 26bp 33466 chr6 167709702 167709702 1 + G A rs2235197 167709703 + 167709683 167709723 41 TTCCAGTCATCCGGTGTGTGGGGCAACTTGATCTCATCGCT TTCCAGTCATCCGGTGTGTAGGGCAACTTGATCTCATCGCT < 41bp 0.494276838172245 0.702103410223979 NA NA prediction 0.404206820447958 Functional Gain - UNC93A ENSG00000112494 CDS Human protein_coding chr6:167709703 chr6:167709702 stopgain 0.692 1 20 hm7G_associated_SNPs_36401 0 0 1 0 1 UNC93A chr6:167709749 5'GT 167709749 Upstream 48bp 33467 chr7 105672843 105672843 1 + C T COAD 105672844 + 105672824 105672864 41 TTTTTTTTTCACTAGTGACCGGGGAAACATATGAATTCAAC TTTTTTTTTCACTAGTGACTGGGGAAACATATGAATTCAAC < 41bp 0.501670473904789 0.703773220256659 NA NA prediction 0.404205492703741 Functional Gain - CDHR3 ENSG00000128536 CDS Human protein_coding chr7:105672844 chr7:105672843 synonymous SNV . 0 20 hm7G_associated_SNPs_36402 0 0 0 0 1 CDHR3 chr7:105672839 3'AG 105672839 Downstream 5bp 33468 chr16 30485571 30485571 1 + C T UCEC 30485572 + 30485552 30485592 41 GCGCGGAGCTTCTCCCCACCGCGCGCCGGGAGGCACTTTGG GCGCGGAGCTTCTCCCCACTGCGCGCCGGGAGGCACTTTGG < 41bp 0.509744940495748 0.711846920785163 NA NA prediction 0.404203960578829 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485572 chr16:30485571 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_36403 0 0 0 0 3 ITGAL chr16:30485517 3'AG 30485517 Downstream 55bp 33469 chr16 30485571 30485571 1 + C T UCEC 30485572 + 30485552 30485592 41 GCGCGGAGCTTCTCCCCACCGCGCGCCGGGAGGCACTTTGG GCGCGGAGCTTCTCCCCACTGCGCGCCGGGAGGCACTTTGG < 41bp 0.509744940495748 0.711846920785163 NA NA prediction 0.404203960578829 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485572 chr16:30485571 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_36403 0 0 0 0 3 ITGAL chr16:30485608 5'GT 30485608 Upstream 38bp 33470 chr16 30485571 30485571 1 + C T UCEC 30485572 + 30485552 30485592 41 GCGCGGAGCTTCTCCCCACCGCGCGCCGGGAGGCACTTTGG GCGCGGAGCTTCTCCCCACTGCGCGCCGGGAGGCACTTTGG < 41bp 0.509744940495748 0.711846920785163 NA NA prediction 0.404203960578829 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30485572 chr16:30485571 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_36403 0 0 0 0 3 ITGAL chr16:30485619 5'GT 30485619 Upstream 49bp 33471 chr22 31494783 31494783 1 + C T PAAD 31494784 + 31494764 31494804 41 GACCTCAGCCTCCCAGGCGCGCAAGGCCATGATTGAGAAGC GACCTCAGCCTCCCAGGCGTGCAAGGCCATGATTGAGAAGC < 41bp 0.517510012057906 0.719608741591231 NA NA prediction 0.404197459066649 Functional Gain - SMTN ENSG00000183963 CDS Human protein_coding chr22:31494784 chr22:31494783 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_36407 0 0 1 0 1 SMTN chr22:31494826 5'GT 31494826 Upstream 44bp 33472 chrX 152815571 152815571 1 + C T READ 152815572 + 152815552 152815592 41 AGTGCGCCCTGCTGGGCTTCGTCTTGGACCTGAAGCGGGAC AGTGCGCCCTGCTGGGCTTTGTCTTGGACCTGAAGCGGGAC < 41bp 0.501352208699763 0.703449042139319 NA NA prediction 0.404193666879113 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152815572 chrX:152815571 synonymous SNV . 0 20 hm7G_associated_SNPs_36408 0 0 1 0 1 ATP2B3 chrX:152815503 3'AG 152815503 Downstream 69bp 33473 chr10 103296331 103296331 1 + C T UCEC 103296332 + 103296312 103296352 41 AGAATGTGGTGCATGTTTACGAGTGTTAGAAGGCCATGAGG AGAATGTGGTGCATGTTTATGAGTGTTAGAAGGCCATGAGG < 41bp 0.531680232747295 0.733774852136752 NA NA prediction 0.404189238778913 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103296332 chr10:103296331 stopgain 0.947 1 20 hm7G_associated_SNPs_36409 0 0 1 0 2 BTRC chr10:103296300 3'AG 103296300 Downstream 32bp 33474 chr10 103296331 103296331 1 + C T UCEC 103296332 + 103296312 103296352 41 AGAATGTGGTGCATGTTTACGAGTGTTAGAAGGCCATGAGG AGAATGTGGTGCATGTTTATGAGTGTTAGAAGGCCATGAGG < 41bp 0.531680232747295 0.733774852136752 NA NA prediction 0.404189238778913 Functional Gain - BTRC ENSG00000166167 CDS Human protein_coding chr10:103296332 chr10:103296331 stopgain 0.947 1 20 hm7G_associated_SNPs_36409 0 0 1 0 2 BTRC chr10:103296410 5'GT 103296410 Upstream 80bp 33475 chr7 150710985 150710985 1 + C T CESC 150710986 + 150710966 150711006 41 TGGAGCTGGACGAGGCCGGCGACGTCATCGGCGTGCTGCGG TGGAGCTGGACGAGGCCGGTGACGTCATCGGCGTGCTGCGG < 41bp 0.511188692999578 0.713278718457293 NA NA prediction 0.404180050915429 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150710986 chr7:150710985 synonymous SNV . 0 20 hm7G_associated_SNPs_36410 0 0 0 0 1 NOS3 chr7:150711006 5'GT 150711006 Upstream 22bp 33476 chr19 16337353 16337353 1 + C T UCEC 16337354 + 16337334 16337374 41 AAGGTCCTCTTTGACAACACGGGCCGTGAGTACCCTTGCCA AAGGTCCTCTTTGACAACATGGGCCGTGAGTACCCTTGCCA < 41bp 0.533050363372548 0.735138211252565 NA NA prediction 0.404175695760033 Functional Gain - AP1M1 ENSG00000072958 CDS Human protein_coding chr19:16337354 chr19:16337353 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_36411 0 0 0 0 1 AP1M1 chr19:16337358 5'GT 16337358 Upstream 6bp 33477 chr11 48152220 48152220 1 + G T UCEC 48152221 + 48152201 48152241 41 CTTTGAAATAGTTCCAAAAGGACCAAATGGGACTGAAGGGG CTTTGAAATAGTTCCAAAATGACCAAATGGGACTGAAGGGG < 41bp 0.359886637354648 0.702085905448488 NA NA prediction 0.404171810896977 Functional Gain - PTPRJ ENSG00000149177 CDS Human protein_coding chr11:48152221 chr11:48152220 stopgain 0.977 0 20 hm7G_associated_SNPs_36413 0 0 1 0 1 PTPRJ chr11:48152268 5'GT 48152268 Upstream 49bp 33478 chr20 2621828 2621828 1 + C T ESCA 2621829 + 2621809 2621849 41 CAGGCCATGGACAAGAAGGCGCAGGGCCCTGGGACCTCCAA CAGGCCATGGACAAGAAGGTGCAGGGCCCTGGGACCTCCAA < 41bp 0.49225408158054 0.702085811179723 NA NA prediction 0.404171622359446 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2621829 chr20:2621828 nonsynonymous SNV 0.205 0 20 hm7G_associated_SNPs_36414 0 0 0 0 1 TMC2 chr20:2621780 3'AG 2621780 Downstream 49bp 33479 chr22 21380345 21380345 1 + G A GBM 21380346 + 21380326 21380366 41 GGCCGTCACACTGGGCACCGGGGCAGCTTGGCTGGGCGTGG GGCCGTCACACTGGGCACCAGGGCAGCTTGGCTGGGCGTGG < 41bp 0.578506478527633 0.780591891284157 NA NA prediction 0.404170825513047 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21380346 chr22:21380345 nonsynonymous SNV 0.952 3 20 hm7G_associated_SNPs_36415 0 0 0 0 2 P2RX6 chr22:21380300 3'AG 21380300 Downstream 46bp 33480 chr22 21380345 21380345 1 + G A GBM 21380346 + 21380326 21380366 41 GGCCGTCACACTGGGCACCGGGGCAGCTTGGCTGGGCGTGG GGCCGTCACACTGGGCACCAGGGCAGCTTGGCTGGGCGTGG < 41bp 0.578506478527633 0.780591891284157 NA NA prediction 0.404170825513047 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21380346 chr22:21380345 nonsynonymous SNV 0.952 3 20 hm7G_associated_SNPs_36415 0 0 0 0 2 P2RX6 chr22:21380365 5'GT 21380365 Upstream 21bp 33481 chr17 14095347 14095347 1 + C T UCEC 14095348 + 14095328 14095368 41 GCCACTTGTTGTGCTGTTCCGGGAGTTGCCATTCTGACCTT GCCACTTGTTGTGCTGTTCTGGGAGTTGCCATTCTGACCTT < 41bp 0.538550678357513 0.740634452286512 NA NA prediction 0.404167547857998 Functional Gain - COX10 ENSG00000006695 CDS Human protein_coding chr17:14095348 chr17:14095347 nonsynonymous SNV 0.544 2 20 hm7G_associated_SNPs_36416 0 0 1 0 1 COX10 chr17:14095306 3'AG 14095306 Downstream 42bp 33482 chr3 197707212 197707212 1 + C T LUSC 197707213 + 197707193 197707233 41 GCAGCAATGCCGGGTCTACCGTGGGGGTAAGTGGCCTCATG GCAGCAATGCCGGGTCTACTGTGGGGGTAAGTGGCCTCATG < 41bp 0.497090886247124 0.70208346822408 NA NA prediction 0.40416693644816 Functional Gain - LMLN ENSG00000185621 CDS Human protein_coding chr3:197707213 chr3:197707212 nonsynonymous SNV 0.985 1 20 hm7G_associated_SNPs_36417 0 0 0 0 1 LMLN chr3:197707197 3'AG 197707197 Downstream 16bp 33483 chr2 119739047 119739047 1 + G A SKCM 119739048 + 119739028 119739068 41 GGGGCCTCCTGGAGCCCAGGGGAGTAAAGGTGACTTCGGGA GGGGCCTCCTGGAGCCCAGAGGAGTAAAGGTGACTTCGGGA < 41bp 0.586347063504261 0.788430240005181 NA NA prediction 0.40416635300184 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739048 chr2:119739047 nonsynonymous SNV 0.975 5 20 hm7G_associated_SNPs_36419 0 0 0 0 2 MARCO chr2:119738985 3'AG 119738985 Downstream 63bp 33484 chr2 119739047 119739047 1 + G A SKCM 119739048 + 119739028 119739068 41 GGGGCCTCCTGGAGCCCAGGGGAGTAAAGGTGACTTCGGGA GGGGCCTCCTGGAGCCCAGAGGAGTAAAGGTGACTTCGGGA < 41bp 0.586347063504261 0.788430240005181 NA NA prediction 0.40416635300184 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119739048 chr2:119739047 nonsynonymous SNV 0.975 5 20 hm7G_associated_SNPs_36419 0 0 0 0 2 MARCO chr2:119739083 5'GT 119739083 Upstream 37bp 33485 chr10 74987901 74987901 1 + C T COAD 74987902 + 74987882 74987922 41 ACATCCTTTGGTGTTACCGCGAGTGCCACAGTCTAAGGTGC ACATCCTTTGGTGTTACCGTGAGTGCCACAGTCTAAGGTGC < 41bp 0.536896779567983 0.738979089445074 NA NA prediction 0.404164619754182 Functional Gain - FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74987902 chr10:74987901 stopgain 0.615 0 20 hm7G_associated_SNPs_36421 0 0 0 0 3 FAM149B1 chr10:74987818 3'AG 74987818 Downstream 84bp 33486 chr10 74987901 74987901 1 + C T COAD 74987902 + 74987882 74987922 41 ACATCCTTTGGTGTTACCGCGAGTGCCACAGTCTAAGGTGC ACATCCTTTGGTGTTACCGTGAGTGCCACAGTCTAAGGTGC < 41bp 0.536896779567983 0.738979089445074 NA NA prediction 0.404164619754182 Functional Gain - FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74987902 chr10:74987901 stopgain 0.615 0 20 hm7G_associated_SNPs_36421 0 0 0 0 3 FAM149B1 chr10:74987918 5'GT 74987918 Upstream 18bp 33487 chr10 74987901 74987901 1 + C T COAD 74987902 + 74987882 74987922 41 ACATCCTTTGGTGTTACCGCGAGTGCCACAGTCTAAGGTGC ACATCCTTTGGTGTTACCGTGAGTGCCACAGTCTAAGGTGC < 41bp 0.536896779567983 0.738979089445074 NA NA prediction 0.404164619754182 Functional Gain - FAM149B1 ENSG00000138286 CDS Human protein_coding chr10:74987902 chr10:74987901 stopgain 0.615 0 20 hm7G_associated_SNPs_36421 0 0 0 0 3 FAM149B1 chr10:74987942 5'GT 74987942 Upstream 42bp 33488 chr9 21818166 21818166 1 + C T rs144006421 21818167 + 21818147 21818187 41 TGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGAT TGAGGGAGGAGATTCAGCCTGGCGATATTGTCATTATTGAT < 41bp 0.53557455032234 0.737656589326188 NA NA prediction 0.404164078007698 Functional Gain - MTAP ENSG00000099810;ENSG00000264545 CDS Human other chr9:21818167 chr9:21818166 synonymous SNV . 0 20 hm7G_associated_SNPs_36422 0 0 1 0 1 MTAP chr9:21818201 5'GT 21818201 Upstream 36bp 33489 chr20 33578085 33578085 1 + C T SKCM 33578086 + 33578066 33578106 41 AAGCGTAAGAAGGCAGCATCGTTCCAGACGGTGTCCCAGCT AAGCGTAAGAAGGCAGCATTGTTCCAGACGGTGTCCCAGCT < 41bp 0.518565249747587 0.720646249307907 NA NA prediction 0.40416199912064 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33578086 chr20:33578085 nonsynonymous SNV 0.721 4 20 hm7G_associated_SNPs_36423 0 0 0 0 2 MYH7B chr20:33578037 3'AG 33578037 Downstream 49bp 33490 chr20 33578085 33578085 1 + C T SKCM 33578086 + 33578066 33578106 41 AAGCGTAAGAAGGCAGCATCGTTCCAGACGGTGTCCCAGCT AAGCGTAAGAAGGCAGCATTGTTCCAGACGGTGTCCCAGCT < 41bp 0.518565249747587 0.720646249307907 NA NA prediction 0.40416199912064 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33578086 chr20:33578085 nonsynonymous SNV 0.721 4 20 hm7G_associated_SNPs_36423 0 0 0 0 2 MYH7B chr20:33578113 5'GT 33578113 Upstream 29bp 33491 chr8 67364315 67364315 1 + C T PAAD 67364316 + 67364296 67364336 41 TTGGGCTATCCACGCGCTGCGGATCGTGGCTAAGTATCTGA TTGGGCTATCCACGCGCTGTGGATCGTGGCTAAGTATCTGA < 41bp 0.492955045823825 0.702079852657431 NA NA prediction 0.404159705314863 Functional Gain - ADHFE1 ENSG00000147576 CDS Human protein_coding chr8:67364316 chr8:67364315 nonsynonymous SNV 0.657 2 20 hm7G_associated_SNPs_36424 0 0 0 0 1 ADHFE1 chr8:67364340 5'GT 67364340 Upstream 26bp 33492 chr11 121466379 121466379 1 + C T UCEC 121466380 + 121466360 121466400 41 CCAACTTGGGCGATGTGACCGATTTGAGTTCGAATGCCACC CCAACTTGGGCGATGTGACTGATTTGAGTTCGAATGCCACC < 41bp 0.489574797665174 0.702077341930977 NA NA prediction 0.404154683861953 Functional Gain - SORL1 ENSG00000137642 CDS Human protein_coding chr11:121466380 chr11:121466379 stopgain 0.955 1 20 hm7G_associated_SNPs_36426 0 0 0 0 1 SORL1 chr11:121466332 3'AG 121466332 Downstream 48bp 33493 chr16 50750826 50750826 1 + C T rs144083291 50750827 + 50750807 50750847 41 TCAACAACAAATTGACTGACGGCTGTGCACACTCCATGGCT TCAACAACAAATTGACTGATGGCTGTGCACACTCCATGGCT < 41bp 0.50627885011548 0.708352886864759 NA NA prediction 0.404148073498559 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50750827 chr16:50750826 synonymous SNV . 0 20 hm7G_associated_SNPs_36427 0 0 0 0 2 NOD2 chr16:50750802 3'AG 50750802 Downstream 25bp 33494 chr16 50750826 50750826 1 + C T rs144083291 50750827 + 50750807 50750847 41 TCAACAACAAATTGACTGACGGCTGTGCACACTCCATGGCT TCAACAACAAATTGACTGATGGCTGTGCACACTCCATGGCT < 41bp 0.50627885011548 0.708352886864759 NA NA prediction 0.404148073498559 Functional Gain - NOD2 ENSG00000167207 CDS Human protein_coding chr16:50750827 chr16:50750826 synonymous SNV . 0 20 hm7G_associated_SNPs_36427 0 0 0 0 2 NOD2 chr16:50750885 5'GT 50750885 Upstream 60bp 33495 chr7 23296587 23296587 1 + C T ACC 23296588 + 23296568 23296608 41 GTGACGGGGAAAATGGCACCGGCCAAAGCCATCATAACGTC GTGACGGGGAAAATGGCACTGGCCAAAGCCATCATAACGTC < 41bp 0.485478511335278 0.702073746263944 NA NA prediction 0.404147492527888 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23296588 chr7:23296587 synonymous SNV . 0 20 hm7G_associated_SNPs_36428 0 0 0 0 2 GPNMB chr7:23296511 3'AG 23296511 Downstream 77bp 33496 chr7 23296587 23296587 1 + C T ACC 23296588 + 23296568 23296608 41 GTGACGGGGAAAATGGCACCGGCCAAAGCCATCATAACGTC GTGACGGGGAAAATGGCACTGGCCAAAGCCATCATAACGTC < 41bp 0.485478511335278 0.702073746263944 NA NA prediction 0.404147492527888 Functional Gain - GPNMB ENSG00000136235 CDS Human protein_coding chr7:23296588 chr7:23296587 synonymous SNV . 0 20 hm7G_associated_SNPs_36428 0 0 0 0 2 GPNMB chr7:23296684 5'GT 23296684 Upstream 98bp 33497 chr14 24641797 24641797 1 + C T HNSC 24641798 + 24641778 24641818 41 ACGTGCTTCAGCGCCACACCGGCTGCTTTGCCACCATCTGG ACGTGCTTCAGCGCCACACTGGCTGCTTTGCCACCATCTGG < 41bp 0.496512316097318 0.702073280877806 NA NA prediction 0.404146561755611 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24641798 chr14:24641797 synonymous SNV . 0 20 hm7G_associated_SNPs_36429 0 0 0 0 1 REC8 chr14:24641817 5'GT 24641817 Upstream 21bp 33498 chr3 52831835 52831835 1 + C T STAD 52831836 + 52831816 52831856 41 TACTTTGGCCATTTCAGATCGAGGTAGACATCTTCGAGCCT TACTTTGGCCATTTCAGATTGAGGTAGACATCTTCGAGCCT < 41bp 0.513259037391599 0.715330907489528 NA NA prediction 0.404143740195858 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52831836 chr3:52831835 synonymous SNV . 0 20 hm7G_associated_SNPs_36430 0 0 1 0 1 ITIH3 chr3:52831833 3'AG 52831833 Downstream 3bp 33499 chr16 2512522 2512522 1 + C T SKCM 2512523 + 2512503 2512543 41 CGCATGAGGGAGGAGCTCTCGGCAGGTCAGTGGGTCCTGGG CGCATGAGGGAGGAGCTCTTGGCAGGTCAGTGGGTCCTGGG < 41bp 0.530160686136329 0.732231457161793 NA NA prediction 0.404141542050928 Functional Gain - C16orf59 ENSG00000162062 CDS Human protein_coding chr16:2512523 chr16:2512522 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_36432 0 0 1 0 1 C16orf59 chr16:2512527 5'GT 2512527 Upstream 6bp 33500 chr19 49378091 49378091 1 + G A rs114326964 49378092 + 49378072 49378112 41 CCCCTCCGACTGCAAAGGCGGCTCAAGCGCCCAGAAACCCC CCCCTCCGACTGCAAAGGCAGCTCAAGCGCCCAGAAACCCC < 41bp 0.565100576823124 0.7671710556169 NA NA prediction 0.404140957587552 Functional Gain - PPP1R15A ENSG00000087074 CDS Human protein_coding chr19:49378092 chr19:49378091 nonsynonymous SNV 0.004 2 20 hm7G_associated_SNPs_36434 0 0 1 0 1 PPP1R15A chr19:49378155 5'GT 49378155 Upstream 65bp 33501 chr9 96847620 96847620 1 + C T UCEC 96847621 + 96847601 96847641 41 CACATGGCATGTTCCATGGCGTGTGGCGGTAGAGCTTGCAA CACATGGCATGTTCCATGGTGTGTGGCGGTAGAGCTTGCAA < 41bp 0.511210862144916 0.713279684592222 NA NA prediction 0.404137644894612 Functional Gain - PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96847621 chr9:96847620 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_36438 0 0 1 0 2 PTPDC1 chr9:96847533 3'AG 96847533 Downstream 88bp 33502 chr9 96847620 96847620 1 + C T UCEC 96847621 + 96847601 96847641 41 CACATGGCATGTTCCATGGCGTGTGGCGGTAGAGCTTGCAA CACATGGCATGTTCCATGGTGTGTGGCGGTAGAGCTTGCAA < 41bp 0.511210862144916 0.713279684592222 NA NA prediction 0.404137644894612 Functional Gain - PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96847621 chr9:96847620 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_36438 0 0 1 0 2 PTPDC1 chr9:96847704 5'GT 96847704 Upstream 85bp 33503 chr3 121591409 121591409 1 + G T COAD 121591410 + 121591390 121591430 41 AGGCAGAAGCTAGTCTAATGGACCAGATGAGTAGTTGTGAT AGGCAGAAGCTAGTCTAATTGACCAGATGAGTAGTTGTGAT < 41bp 0.693650932333487 0.895719517176664 NA NA prediction 0.404137169686354 Functional Gain - EAF2 ENSG00000145088 CDS Human protein_coding chr3:121591410 chr3:121591409 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36439 0 0 0 0 1 EAF2 chr3:121591384 3'AG 121591384 Downstream 26bp 33504 chr16 56906673 56906673 1 + G T LUSC 56906674 + 56906654 56906694 41 GCCACAGGCATCCTGGCAGGGGCCAACATATCTGGTGACCT GCCACAGGCATCCTGGCAGTGGCCAACATATCTGGTGACCT < 41bp 0.346618508626991 0.702066314938281 NA NA prediction 0.404132629876563 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56906674 chr16:56906673 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_36440 0 0 0 0 1 SLC12A3 chr16:56906698 5'GT 56906698 Upstream 26bp 33505 chr17 6927466 6927466 1 + G A UCEC 6927467 + 6927447 6927487 41 GGACGTGCTCTCTCTGCCCGGGGGTCCCGAAGCGAGAGGCT GGACGTGCTCTCTCTGCCCAGGGGTCCCGAAGCGAGAGGCT < 41bp 0.592972702613053 0.795038582440791 NA NA prediction 0.404131759655475 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927467 chr17:6927466 nonsynonymous SNV 0.686 0 20 hm7G_associated_SNPs_36442 0 0 0 0 1 BCL6B chr17:6927402 3'AG 6927402 Downstream 65bp 33506 chr8 30416407 30416407 1 + C T COAD 30416408 + 30416388 30416428 41 TCCCATGTCTTTTCAGATGCGCTGGCTCCCTCCCTCCGAGG TCCCATGTCTTTTCAGATGTGCTGGCTCCCTCCCTCCGAGG < 41bp 0.534681132754816 0.736746486305426 NA NA prediction 0.40413070710122 Functional Gain - RBPMS ENSG00000157110 CDS Human protein_coding chr8:30416408 chr8:30416407 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36443 0 0 1 0 2 RBPMS chr8:30416404 3'AG 30416404 Downstream 4bp 33507 chr8 30416407 30416407 1 + C T COAD 30416408 + 30416388 30416428 41 TCCCATGTCTTTTCAGATGCGCTGGCTCCCTCCCTCCGAGG TCCCATGTCTTTTCAGATGTGCTGGCTCCCTCCCTCCGAGG < 41bp 0.534681132754816 0.736746486305426 NA NA prediction 0.40413070710122 Functional Gain - RBPMS ENSG00000157110 CDS Human protein_coding chr8:30416408 chr8:30416407 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36443 0 0 1 0 2 RBPMS chr8:30416473 5'GT 30416473 Upstream 67bp 33508 chr12 58009785 58009785 1 + C T PRAD 58009786 + 58009766 58009806 41 TCAGATCTTGGAGAGCCAACGGGACTTCCTCAACGGTGAAG TCAGATCTTGGAGAGCCAATGGGACTTCCTCAACGGTGAAG < 41bp 0.549070749770166 0.751135889500375 NA NA prediction 0.404130279460419 Functional Gain - ARHGEF25 ENSG00000240771 CDS Human protein_coding chr12:58009786 chr12:58009785 nonsynonymous SNV 0.939 3 20 hm7G_associated_SNPs_36444 0 0 1 0 1 ARHGEF25 chr12:58009800 5'GT 58009800 Upstream 16bp 33509 chr5 167887709 167887709 1 + C T HNSC 167887710 + 167887690 167887730 41 CAAAAAGCCACCTTTTGTTCGAAACTCCCTGGAGCGACGCA CAAAAAGCCACCTTTTGTTTGAAACTCCCTGGAGCGACGCA < 41bp 0.562323993877192 0.764388699781233 NA NA prediction 0.404129411808082 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167887710 chr5:167887709 stopgain 0.998 1 20 hm7G_associated_SNPs_36445 0 0 0 0 2 WWC1 chr5:167887655 3'AG 167887655 Downstream 55bp 33510 chr5 167887709 167887709 1 + C T HNSC 167887710 + 167887690 167887730 41 CAAAAAGCCACCTTTTGTTCGAAACTCCCTGGAGCGACGCA CAAAAAGCCACCTTTTGTTTGAAACTCCCTGGAGCGACGCA < 41bp 0.562323993877192 0.764388699781233 NA NA prediction 0.404129411808082 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167887710 chr5:167887709 stopgain 0.998 1 20 hm7G_associated_SNPs_36445 0 0 0 0 2 WWC1 chr5:167887747 5'GT 167887747 Upstream 39bp 33511 chr14 103369758 103369758 1 + G A LUAD 103369759 + 103369739 103369779 41 AGCGCGGGGCAAGTGGCTCGGAACACAGGTGAGGCAGGGGC AGCGCGGGGCAAGTGGCTCAGAACACAGGTGAGGCAGGGGC < 41bp 0.498783398806161 0.70206467138922 NA NA prediction 0.404129342778439 Functional Gain - TRAF3 ENSG00000131323 CDS Human protein_coding chr14:103369759 chr14:103369758 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_36446 0 0 0 0 1 TRAF3 chr14:103369766 5'GT 103369766 Upstream 9bp 33512 chr11 67076990 67076990 1 + C T STAD 67076991 + 67076971 67077011 41 CTGCCGCACTGGAAGGAGACGCACCGCTTCATTGAGGCTGC CTGCCGCACTGGAAGGAGATGCACCGCTTCATTGAGGCTGC < 41bp 0.534429189775185 0.736493758870965 NA NA prediction 0.40412913819156 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67076991 chr11:67076990 nonsynonymous SNV 0.856 4 20 hm7G_associated_SNPs_36447 0 0 0 0 1 SSH3 chr11:67077014 5'GT 67077014 Upstream 25bp 33513 chr19 7742584 7742584 1 + G A SKCM 7742585 + 7742565 7742605 41 AAAATCAGGACCATGCAAAGGGTGGTCATTCACGACCCACG AAAATCAGGACCATGCAAAAGGTGGTCATTCACGACCCACG < 41bp 0.552468814726396 0.754531841802107 NA NA prediction 0.404126054151421 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742585 chr19:7742584 synonymous SNV . 0 20 hm7G_associated_SNPs_36449 0 0 0 0 2 MCEMP1 chr19:7742523 3'AG 7742523 Downstream 62bp 33514 chr19 7742584 7742584 1 + G A SKCM 7742585 + 7742565 7742605 41 AAAATCAGGACCATGCAAAGGGTGGTCATTCACGACCCACG AAAATCAGGACCATGCAAAAGGTGGTCATTCACGACCCACG < 41bp 0.552468814726396 0.754531841802107 NA NA prediction 0.404126054151421 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742585 chr19:7742584 synonymous SNV . 0 20 hm7G_associated_SNPs_36449 0 0 0 0 2 MCEMP1 chr19:7742612 5'GT 7742612 Upstream 29bp 33515 chr7 150501482 150501482 1 + G A LUSC 150501483 + 150501463 150501503 41 CCCTTCAGGCCATGCTCTTGGGTGTCTGGATTCTGCTGCTT CCCTTCAGGCCATGCTCTTAGGTGTCTGGATTCTGCTGCTT < 41bp 0.468138452490733 0.702062107126173 NA NA prediction 0.404124214252346 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150501483 chr7:150501482 synonymous SNV . 0 20 hm7G_associated_SNPs_36450 0 0 0 0 2 TMEM176A chr7:150501450 3'AG 150501450 Downstream 33bp 33516 chr7 150501482 150501482 1 + G A LUSC 150501483 + 150501463 150501503 41 CCCTTCAGGCCATGCTCTTGGGTGTCTGGATTCTGCTGCTT CCCTTCAGGCCATGCTCTTAGGTGTCTGGATTCTGCTGCTT < 41bp 0.468138452490733 0.702062107126173 NA NA prediction 0.404124214252346 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150501483 chr7:150501482 synonymous SNV . 0 20 hm7G_associated_SNPs_36450 0 0 0 0 2 TMEM176A chr7:150501560 5'GT 150501560 Upstream 79bp 33517 chr6 168947785 168947785 1 + C T SKCM 168947786 + 168947766 168947806 41 TCTCCTTGCAAATCTTTTCCGTTCTGAATTCAGATGATGCC TCTCCTTGCAAATCTTTTCTGTTCTGAATTCAGATGATGCC < 41bp 0.532131187796568 0.734191322351299 NA NA prediction 0.404120269109463 Functional Gain - SMOC2 ENSG00000112562 CDS Human protein_coding chr6:168947786 chr6:168947785 synonymous SNV . 0 20 hm7G_associated_SNPs_36452 0 0 0 0 2 SMOC2 chr6:168947766 3'AG 168947766 Downstream 20bp 33518 chr6 168947785 168947785 1 + C T SKCM 168947786 + 168947766 168947806 41 TCTCCTTGCAAATCTTTTCCGTTCTGAATTCAGATGATGCC TCTCCTTGCAAATCTTTTCTGTTCTGAATTCAGATGATGCC < 41bp 0.532131187796568 0.734191322351299 NA NA prediction 0.404120269109463 Functional Gain - SMOC2 ENSG00000112562 CDS Human protein_coding chr6:168947786 chr6:168947785 synonymous SNV . 0 20 hm7G_associated_SNPs_36452 0 0 0 0 2 SMOC2 chr6:168947849 5'GT 168947849 Upstream 65bp 33519 chr12 6946681 6946681 1 + C T SKCM 6946682 + 6946662 6946702 41 ACCCAGGCCTACTTCTCCCCGGAACGGCCCCTGCATCTGTC ACCCAGGCCTACTTCTCCCTGGAACGGCCCCTGCATCTGTC < 41bp 0.544823053251753 0.746881464468584 NA NA prediction 0.404116822433663 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946682 chr12:6946681 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_36454 0 0 0 0 2 P3H3 chr12:6946587 3'AG 6946587 Downstream 95bp 33520 chr12 6946681 6946681 1 + C T SKCM 6946682 + 6946662 6946702 41 ACCCAGGCCTACTTCTCCCCGGAACGGCCCCTGCATCTGTC ACCCAGGCCTACTTCTCCCTGGAACGGCCCCTGCATCTGTC < 41bp 0.544823053251753 0.746881464468584 NA NA prediction 0.404116822433663 Functional Gain - P3H3 ENSG00000110811 CDS Human protein_coding chr12:6946682 chr12:6946681 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_36454 0 0 0 0 2 P3H3 chr12:6946737 5'GT 6946737 Upstream 57bp 33521 chr2 128391775 128391775 1 + C T PRAD 128391776 + 128391756 128391796 41 GGAGGTGGTTGCCAACACACGGGTGCGGGATGTGTGTGACA GGAGGTGGTTGCCAACACATGGGTGCGGGATGTGTGTGACA < 41bp 0.506073901508746 0.708131517569048 NA NA prediction 0.404115232120603 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128391776 chr2:128391775 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_36455 0 0 0 0 2 MYO7B chr2:128391751 3'AG 128391751 Downstream 25bp 33522 chr2 128391775 128391775 1 + C T PRAD 128391776 + 128391756 128391796 41 GGAGGTGGTTGCCAACACACGGGTGCGGGATGTGTGTGACA GGAGGTGGTTGCCAACACATGGGTGCGGGATGTGTGTGACA < 41bp 0.506073901508746 0.708131517569048 NA NA prediction 0.404115232120603 Functional Gain - MYO7B ENSG00000169994 CDS Human protein_coding chr2:128391776 chr2:128391775 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_36455 0 0 0 0 2 MYO7B chr2:128391864 5'GT 128391864 Upstream 90bp 33523 chr3 49757993 49757993 1 + C T STAD 49757994 + 49757974 49758014 41 AGATCCCTGCTTCCAGCTACGCTCAATATGCTATCTCCTGG AGATCCCTGCTTCCAGCTATGCTCAATATGCTATCTCCTGG < 41bp 0.49294252101944 0.702057392422268 NA NA prediction 0.404114784844536 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49757994 chr3:49757993 nonsynonymous SNV 0.878 2 20 hm7G_associated_SNPs_36457 0 0 0 2 2 RNF123 chr3:49757944 3'AG 49757944 Downstream 50bp 33524 chr3 49757993 49757993 1 + C T STAD 49757994 + 49757974 49758014 41 AGATCCCTGCTTCCAGCTACGCTCAATATGCTATCTCCTGG AGATCCCTGCTTCCAGCTATGCTCAATATGCTATCTCCTGG < 41bp 0.49294252101944 0.702057392422268 NA NA prediction 0.404114784844536 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49757994 chr3:49757993 nonsynonymous SNV 0.878 2 20 hm7G_associated_SNPs_36457 0 0 0 2 2 RNF123 chr3:49758086 5'GT 49758086 Upstream 94bp 33525 chr8 70476293 70476293 1 + C T ESCA 70476294 + 70476274 70476314 41 TGTTCGACTGTCAGATCCCCGAGGTTCAGAGGACGGATACA TGTTCGACTGTCAGATCCCTGAGGTTCAGAGGACGGATACA < 41bp 0.533865508215652 0.735922636325134 NA NA prediction 0.404114256218963 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70476294 chr8:70476293 nonsynonymous SNV 0.649 0 20 hm7G_associated_SNPs_36458 0 0 0 0 1 SULF1 chr8:70476382 5'GT 70476382 Upstream 90bp 33526 chr17 19476132 19476132 1 + C T UCEC 19476133 + 19476113 19476153 41 GAAAGTAAACAACGTGCCTCGGAGTGGGAATTCTGCTCTCC GAAAGTAAACAACGTGCCTTGGAGTGGGAATTCTGCTCTCC < 41bp 0.50758563963708 0.709642169988839 NA NA prediction 0.404113060703519 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19476133 chr17:19476132 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_36459 0 0 1 0 2 SLC47A1 chr17:19476093 3'AG 19476093 Downstream 40bp 33527 chr17 19476132 19476132 1 + C T UCEC 19476133 + 19476113 19476153 41 GAAAGTAAACAACGTGCCTCGGAGTGGGAATTCTGCTCTCC GAAAGTAAACAACGTGCCTTGGAGTGGGAATTCTGCTCTCC < 41bp 0.50758563963708 0.709642169988839 NA NA prediction 0.404113060703519 Functional Gain - SLC47A1 ENSG00000142494 CDS Human protein_coding chr17:19476133 chr17:19476132 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_36459 0 0 1 0 2 SLC47A1 chr17:19476174 5'GT 19476174 Upstream 43bp 33528 chr17 15906128 15906128 1 + C T COAD 15906129 + 15906109 15906149 41 GGCCAACTTAGCATTTATACGGGGTCAGCTTGAAAATGTAA GGCCAACTTAGCATTTATATGGGGTCAGCTTGAAAATGTAA < 41bp 0.512751244024815 0.714805526824357 NA NA prediction 0.404108565599083 Functional Gain - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15906129 chr17:15906128 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36461 0 0 1 0 2 TTC19 chr17:15906107 3'AG 15906107 Downstream 22bp 33529 chr17 15906128 15906128 1 + C T COAD 15906129 + 15906109 15906149 41 GGCCAACTTAGCATTTATACGGGGTCAGCTTGAAAATGTAA GGCCAACTTAGCATTTATATGGGGTCAGCTTGAAAATGTAA < 41bp 0.512751244024815 0.714805526824357 NA NA prediction 0.404108565599083 Functional Gain - TTC19 ENSG00000011295 CDS Human protein_coding chr17:15906129 chr17:15906128 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36461 0 0 1 0 2 TTC19 chr17:15906145 5'GT 15906145 Upstream 18bp 33530 chr22 25019798 25019798 1 + C T BLCA 25019799 + 25019779 25019819 41 CCCGAGCAGAAGGGCCTGACGTACCACCGCATCGTAGAGGC CCCGAGCAGAAGGGCCTGATGTACCACCGCATCGTAGAGGC < 41bp 0.527223557369666 0.729277570632318 NA NA prediction 0.404108026525303 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25019799 chr22:25019798 nonsynonymous SNV 0.196 1 20 hm7G_associated_SNPs_36462 0 0 0 0 1 GGT1 chr22:25019883 5'GT 25019883 Upstream 86bp 33531 chr11 64880969 64880969 1 + C T SKCM 64880970 + 64880950 64880990 41 CAATATTCTCCAGGCAATCCGATTTACGACTTTTTTCTGGG CAATATTCTCCAGGCAATCTGATTTACGACTTTTTTCTGGG < 41bp 0.518036366125598 0.720089241126092 NA NA prediction 0.404105750000988 Functional Gain - TM7SF2 ENSG00000149809 CDS Human protein_coding chr11:64880970 chr11:64880969 nonsynonymous SNV 0.656 0 20 hm7G_associated_SNPs_36465 0 0 1 0 2 TM7SF2 chr11:64880963 3'AG 64880963 Downstream 7bp 33532 chr11 64880969 64880969 1 + C T SKCM 64880970 + 64880950 64880990 41 CAATATTCTCCAGGCAATCCGATTTACGACTTTTTTCTGGG CAATATTCTCCAGGCAATCTGATTTACGACTTTTTTCTGGG < 41bp 0.518036366125598 0.720089241126092 NA NA prediction 0.404105750000988 Functional Gain - TM7SF2 ENSG00000149809 CDS Human protein_coding chr11:64880970 chr11:64880969 nonsynonymous SNV 0.656 0 20 hm7G_associated_SNPs_36465 0 0 1 0 2 TM7SF2 chr11:64881066 5'GT 64881066 Upstream 98bp 33533 chr5 137728973 137728973 1 + C T UCEC 137728974 + 137728954 137728994 41 ACCTCATCTGCACAAGTGTCGTGAATGCCGCCTGGAGCGGT ACCTCATCTGCACAAGTGTTGTGAATGCCGCCTGGAGCGGT < 41bp 0.530497258085581 0.732550001067984 NA NA prediction 0.404105485964806 Functional Gain - KDM3B ENSG00000120733 CDS Human protein_coding chr5:137728974 chr5:137728973 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_36466 0 0 1 0 1 KDM3B chr5:137729061 5'GT 137729061 Upstream 89bp 33534 chr7 44796077 44796077 1 + C T UCEC 44796078 + 44796058 44796098 41 CAACAAAGCGCCACTCAGCCGGCTGGATCGCTGTCTGTGGT CAACAAAGCGCCACTCAGCTGGCTGGATCGCTGTCTGTGGT < 41bp 0.483794167647134 0.702052588027852 NA NA prediction 0.404105176055705 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796078 chr7:44796077 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_36467 0 0 1 0 2 ZMIZ2 chr7:44796024 3'AG 44796024 Downstream 54bp 33535 chr7 44796077 44796077 1 + C T UCEC 44796078 + 44796058 44796098 41 CAACAAAGCGCCACTCAGCCGGCTGGATCGCTGTCTGTGGT CAACAAAGCGCCACTCAGCTGGCTGGATCGCTGTCTGTGGT < 41bp 0.483794167647134 0.702052588027852 NA NA prediction 0.404105176055705 Functional Gain - ZMIZ2 ENSG00000122515 CDS Human protein_coding chr7:44796078 chr7:44796077 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_36467 0 0 1 0 2 ZMIZ2 chr7:44796138 5'GT 44796138 Upstream 62bp 33536 chr2 27838116 27838116 1 + C T SKCM 27838117 + 27838097 27838137 41 AGATATCAAGAAATATCATCGTATTCAGTGTCCTAACCAGG AGATATCAAGAAATATCATTGTATTCAGTGTCCTAACCAGG < 41bp 0.502100875080402 0.704152490387517 NA NA prediction 0.404103230614231 Functional Gain - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27838117 chr2:27838116 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_36470 0 0 1 0 2 ZNF512 chr2:27838035 3'AG 27838035 Downstream 82bp 33537 chr2 27838116 27838116 1 + C T SKCM 27838117 + 27838097 27838137 41 AGATATCAAGAAATATCATCGTATTCAGTGTCCTAACCAGG AGATATCAAGAAATATCATTGTATTCAGTGTCCTAACCAGG < 41bp 0.502100875080402 0.704152490387517 NA NA prediction 0.404103230614231 Functional Gain - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27838117 chr2:27838116 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_36470 0 0 1 0 2 ZNF512 chr2:27838136 5'GT 27838136 Upstream 21bp 33538 chr9 127231765 127231765 1 + C T rs76434769 127231766 + 127231746 127231786 41 CACCGTGTCCAGTGCCCGCCGCCGTGCCCGCATGTTGAGCC CACCGTGTCCAGTGCCCGCTGCCGTGCCCGCATGTTGAGCC < 41bp 0.490453239785781 0.70204990004107 NA NA prediction 0.40409980008214 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127231766 chr9:127231765 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_36473 0 0 0 0 1 PSMB7;NR5A1 chr9:127231711 3'AG 127231711 Downstream 55bp 33539 chr9 132637665 132637665 1 + C T GBM 132637666 + 132637646 132637686 41 GCGGGAGCCCAGCCTGCTGCGGTTCTACGTGTCCCGCGAGT GCGGGAGCCCAGCCTGCTGTGGTTCTACGTGTCCCGCGAGT < 41bp 0.544814735651651 0.746863741546031 NA NA prediction 0.404098011788762 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132637666 chr9:132637665 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_36474 0 0 0 0 2 USP20 chr9:132637589 3'AG 132637589 Downstream 77bp 33540 chr9 132637665 132637665 1 + C T GBM 132637666 + 132637646 132637686 41 GCGGGAGCCCAGCCTGCTGCGGTTCTACGTGTCCCGCGAGT GCGGGAGCCCAGCCTGCTGTGGTTCTACGTGTCCCGCGAGT < 41bp 0.544814735651651 0.746863741546031 NA NA prediction 0.404098011788762 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132637666 chr9:132637665 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_36474 0 0 0 0 2 USP20 chr9:132637758 5'GT 132637758 Upstream 94bp 33541 chr10 127429150 127429150 1 + C T COAD 127429151 + 127429131 127429171 41 AGGCCTATTATGTTTTGTCCGATGCTGCCATGAGTCTTCAG AGGCCTATTATGTTTTGTCTGATGCTGCCATGAGTCTTCAG < 41bp 0.5523056426162 0.754353922584727 NA NA prediction 0.404096559937056 Functional Gain - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127429151 chr10:127429150 synonymous SNV . 0 20 hm7G_associated_SNPs_36475 0 0 1 0 1 EDRF1 chr10:127429220 5'GT 127429220 Upstream 71bp 33542 chr13 28834625 28834625 1 + C T rs45566937 28834626 + 28834606 28834646 41 ATCCTCCAACTGCACCTCACGTTGCTTATATGCAACCGAAA ATCCTCCAACTGCACCTCATGTTGCTTATATGCAACCGAAA < 41bp 0.495066642620029 0.702045648090769 NA NA prediction 0.404091296181538 Functional Gain - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28834626 chr13:28834625 synonymous SNV . 0 20 hm7G_associated_SNPs_36476 0 0 1 0 2 PAN3 chr13:28834584 3'AG 28834584 Downstream 42bp 33543 chr13 28834625 28834625 1 + C T rs45566937 28834626 + 28834606 28834646 41 ATCCTCCAACTGCACCTCACGTTGCTTATATGCAACCGAAA ATCCTCCAACTGCACCTCATGTTGCTTATATGCAACCGAAA < 41bp 0.495066642620029 0.702045648090769 NA NA prediction 0.404091296181538 Functional Gain - PAN3 ENSG00000152520 CDS Human protein_coding chr13:28834626 chr13:28834625 synonymous SNV . 0 20 hm7G_associated_SNPs_36476 0 0 1 0 2 PAN3 chr13:28834688 5'GT 28834688 Upstream 64bp 33544 chr3 39178844 39178844 1 + C T UCEC 39178845 + 39178825 39178865 41 AAGGCTAACATGGAGGCTGCGCTGGGCAGCTTCATCCAGAT AAGGCTAACATGGAGGCTGTGCTGGGCAGCTTCATCCAGAT < 41bp 0.532681264539977 0.734725896589173 NA NA prediction 0.404089264098392 Functional Gain - TTC21A ENSG00000168026 CDS Human protein_coding chr3:39178845 chr3:39178844 nonsynonymous SNV 0.082 5 20 hm7G_associated_SNPs_36477 0 0 0 0 1 TTC21A chr3:39178878 5'GT 39178878 Upstream 35bp 33545 chr16 2122880 2122880 1 + C T SKCM 2122881 + 2122861 2122901 41 AAAGACACTGGAGCGGCTCCGAGGCGCCCCAGAAGGCTTCT AAAGACACTGGAGCGGCTCTGAGGCGCCCCAGAAGGCTTCT < 41bp 0.501195882575169 0.703240077969235 NA NA prediction 0.404088390788132 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2122881 chr16:2122880 stopgain 0.987 0 20 hm7G_associated_SNPs_36478 2 0 1 0 1 TSC2 chr16:2122850 3'AG 2122850 Downstream 31bp 33546 chr2 220497695 220497695 1 + G A PAAD 220497696 + 220497676 220497716 41 CAGATCCGGCCGGAGGACAGGGCCAGCGTCCTACGTACCCT CAGATCCGGCCGGAGGACAAGGCCAGCGTCCTACGTACCCT < 41bp 0.475274611496783 0.702043313190333 NA NA prediction 0.404086626380665 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220497696 chr2:220497695 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_36480 0 0 0 0 2 SLC4A3 chr2:220497596 3'AG 220497596 Downstream 100bp 33547 chr2 220497695 220497695 1 + G A PAAD 220497696 + 220497676 220497716 41 CAGATCCGGCCGGAGGACAGGGCCAGCGTCCTACGTACCCT CAGATCCGGCCGGAGGACAAGGCCAGCGTCCTACGTACCCT < 41bp 0.475274611496783 0.702043313190333 NA NA prediction 0.404086626380665 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220497696 chr2:220497695 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_36480 0 0 0 0 2 SLC4A3 chr2:220497731 5'GT 220497731 Upstream 37bp 33548 chr1 156130751 156130751 1 + C T HNSC 156130752 + 156130732 156130772 41 AGGTCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTTT AGGTCGTCTACTTCTTCTTTGAGGAGACAGCCAGCGAGTTT < 41bp 0.55804170074858 0.760084386448555 NA NA prediction 0.404085371399949 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156130752 chr1:156130751 synonymous SNV . 0 20 hm7G_associated_SNPs_36481 0 0 0 0 2 SEMA4A chr1:156130696 3'AG 156130696 Downstream 56bp 33549 chr1 156130751 156130751 1 + C T HNSC 156130752 + 156130732 156130772 41 AGGTCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTTT AGGTCGTCTACTTCTTCTTTGAGGAGACAGCCAGCGAGTTT < 41bp 0.55804170074858 0.760084386448555 NA NA prediction 0.404085371399949 Functional Gain - SEMA4A ENSG00000196189 CDS Human protein_coding chr1:156130752 chr1:156130751 synonymous SNV . 0 20 hm7G_associated_SNPs_36481 0 0 0 0 2 SEMA4A chr1:156130820 5'GT 156130820 Upstream 70bp 33550 chr16 50325758 50325758 1 + G T LUAD 50325759 + 50325739 50325779 41 CTCCCACCTCCTGGTGCTCGGTTCTTTGATGGGAGGCTTCA CTCCCACCTCCTGGTGCTCTGTTCTTTGATGGGAGGCTTCA < 41bp 0.357124512234174 0.702040508847229 NA NA prediction 0.404081017694458 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50325759 chr16:50325758 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_36483 0 0 1 0 1 ADCY7 chr16:50325808 5'GT 50325808 Upstream 51bp 33551 chr11 22363309 22363309 1 + G A STAD 22363310 + 22363290 22363330 41 CAGCACCATCCACCGCGGGGGCAAGGTCATCAAGGAGGTGG CAGCACCATCCACCGCGGGAGCAAGGTCATCAAGGAGGTGG < 41bp 0.492872200080115 0.702040283484759 NA NA prediction 0.404080566969517 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363310 chr11:22363309 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_36484 0 0 0 0 1 SLC17A6 chr11:22363326 5'GT 22363326 Upstream 18bp 33552 chr2 159526239 159526239 1 + C T ESCA 159526240 + 159526220 159526260 41 TGCCGTTGGCAGGCAAATACGCCATGCGAGACCTGGTCAAC TGCCGTTGGCAGGCAAATATGCCATGCGAGACCTGGTCAAC < 41bp 0.536868154665108 0.738908071510136 NA NA prediction 0.404079833690056 Functional Gain - PKP4 ENSG00000144283 CDS Human protein_coding chr2:159526240 chr2:159526239 synonymous SNV . 0 20 hm7G_associated_SNPs_36485 0 0 1 0 1 PKP4 chr2:159526232 3'AG 159526232 Downstream 8bp 33553 chr4 5731072 5731072 1 + C T SKCM 5731073 + 5731053 5731093 41 ACAGCAATATCACAGCATTCGCCCTGAAGGCCAAAGTCATC ACAGCAATATCACAGCATTTGCCCTGAAGGCCAAAGTCATC < 41bp 0.525558077968425 0.727597875872305 NA NA prediction 0.40407959580776 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5731073 chr4:5731072 synonymous SNV . 0 20 hm7G_associated_SNPs_36486 0 0 0 0 2 EVC chr4:5731034 3'AG 5731034 Downstream 39bp 33554 chr4 5731072 5731072 1 + C T SKCM 5731073 + 5731053 5731093 41 ACAGCAATATCACAGCATTCGCCCTGAAGGCCAAAGTCATC ACAGCAATATCACAGCATTTGCCCTGAAGGCCAAAGTCATC < 41bp 0.525558077968425 0.727597875872305 NA NA prediction 0.40407959580776 Functional Gain - EVC ENSG00000072840 CDS Human protein_coding chr4:5731073 chr4:5731072 synonymous SNV . 0 20 hm7G_associated_SNPs_36486 0 0 0 0 2 EVC chr4:5731117 5'GT 5731117 Upstream 46bp 33555 chr1 60019824 60019824 1 + C T COAD 60019825 + 60019805 60019845 41 GGGCAGATGTGAGAGGGCACGGCCTCATCTGTGAGGGGCAG GGGCAGATGTGAGAGGGCATGGCCTCATCTGTGAGGGGCAG < 41bp 0.50186105315307 0.703900442006702 NA NA prediction 0.404078777707265 Functional Gain - FGGY ENSG00000172456 CDS Human protein_coding chr1:60019825 chr1:60019824 synonymous SNV . 0 20 hm7G_associated_SNPs_36488 0 0 1 0 2 FGGY chr1:60019796 3'AG 60019796 Downstream 29bp 33556 chr1 60019824 60019824 1 + C T COAD 60019825 + 60019805 60019845 41 GGGCAGATGTGAGAGGGCACGGCCTCATCTGTGAGGGGCAG GGGCAGATGTGAGAGGGCATGGCCTCATCTGTGAGGGGCAG < 41bp 0.50186105315307 0.703900442006702 NA NA prediction 0.404078777707265 Functional Gain - FGGY ENSG00000172456 CDS Human protein_coding chr1:60019825 chr1:60019824 synonymous SNV . 0 20 hm7G_associated_SNPs_36488 0 0 1 0 2 FGGY chr1:60019899 5'GT 60019899 Upstream 76bp 33557 chr1 77987538 77987538 1 + G A UCEC 77987539 + 77987519 77987559 41 TTTTGGAGCTCCTGAAGGAGGCCATGGTGGCCAGCCTCGGG TTTTGGAGCTCCTGAAGGAAGCCATGGTGGCCAGCCTCGGG < 41bp 0.516923599602234 0.718962621552918 NA NA prediction 0.404078043901368 Functional Gain - AK5 ENSG00000154027 CDS Human protein_coding chr1:77987539 chr1:77987538 synonymous SNV . 0 20 hm7G_associated_SNPs_36489 0 0 0 0 1 AK5 chr1:77987512 3'AG 77987512 Downstream 27bp 33558 chr3 180680719 180680719 1 + C T COAD 180680720 + 180680700 180680740 41 ACAGATTGATGAACAGCTGCGACAGATTGGTATGGGTTTCA ACAGATTGATGAACAGCTGTGACAGATTGGTATGGGTTTCA < 41bp 0.533106325956254 0.735143605160515 NA NA prediction 0.404074558408521 Functional Gain - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180680720 chr3:180680719 stopgain 0.994 1 20 hm7G_associated_SNPs_36491 0 0 1 0 2 FXR1 chr3:180680671 3'AG 180680671 Downstream 49bp 33559 chr3 180680719 180680719 1 + C T COAD 180680720 + 180680700 180680740 41 ACAGATTGATGAACAGCTGCGACAGATTGGTATGGGTTTCA ACAGATTGATGAACAGCTGTGACAGATTGGTATGGGTTTCA < 41bp 0.533106325956254 0.735143605160515 NA NA prediction 0.404074558408521 Functional Gain - FXR1 ENSG00000114416 CDS Human protein_coding chr3:180680720 chr3:180680719 stopgain 0.994 1 20 hm7G_associated_SNPs_36491 0 0 1 0 2 FXR1 chr3:180680728 5'GT 180680728 Upstream 10bp 33560 chr1 20662808 20662808 1 + C T UCEC 20662809 + 20662789 20662829 41 CCTACAGGACAAGAGGCGCCGGTACAGCATGCTGCACTCTC CCTACAGGACAAGAGGCGCTGGTACAGCATGCTGCACTCTC < 41bp 0.552355559140078 0.754392677977279 NA NA prediction 0.404074237674402 Functional Gain - VWA5B1 ENSG00000158816 CDS Human protein_coding chr1:20662809 chr1:20662808 nonsynonymous SNV 0.003 3 20 hm7G_associated_SNPs_36492 0 0 0 0 1 VWA5B1 chr1:20662796 3'AG 20662796 Downstream 13bp 33561 chr11 86126234 86126234 1 + C T UCEC 86126235 + 86126215 86126255 41 GATGGTGGAAAAGCAAAAGCGAGAACAAAATTACATGAAAC GATGGTGGAAAAGCAAAAGTGAGAACAAAATTACATGAAAC < 41bp 0.516856289194649 0.718890209750731 NA NA prediction 0.404067841112164 Functional Gain - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86126235 chr11:86126234 stopgain 0.277 0 20 hm7G_associated_SNPs_36496 0 0 1 0 1 CCDC81 chr11:86126135 3'AG 86126135 Downstream 100bp 33562 chr17 2279497 2279497 1 + C T UCEC 2279498 + 2279478 2279518 41 GGATGTGCAGAGGTGTGACCGCAACTACTGGTACTTCACGC GGATGTGCAGAGGTGTGACTGCAACTACTGGTACTTCACGC < 41bp 0.555937690262323 0.757967764121687 NA NA prediction 0.40406014771873 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2279498 chr17:2279497 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36499 0 0 1 0 2 SGSM2 chr17:2279431 3'AG 2279431 Downstream 67bp 33563 chr17 2279497 2279497 1 + C T UCEC 2279498 + 2279478 2279518 41 GGATGTGCAGAGGTGTGACCGCAACTACTGGTACTTCACGC GGATGTGCAGAGGTGTGACTGCAACTACTGGTACTTCACGC < 41bp 0.555937690262323 0.757967764121687 NA NA prediction 0.40406014771873 Functional Gain - SGSM2 ENSG00000141258 CDS Human protein_coding chr17:2279498 chr17:2279497 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36499 0 0 1 0 2 SGSM2 chr17:2279555 5'GT 2279555 Upstream 59bp 33564 chr1 171061921 171061921 1 + G T STAD 171061922 + 171061902 171061942 41 AATGACATTGGGGGCCTGTGGAAATTTTCAGTGAGTAGCAT AATGACATTGGGGGCCTGTTGAAATTTTCAGTGAGTAGCAT < 41bp 0.645003119513497 0.847032427445629 NA NA prediction 0.404058615864264 Functional Gain - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171061922 chr1:171061921 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36502 0 0 0 0 1 FMO3 chr1:171061931 5'GT 171061931 Upstream 11bp 33565 chr12 7479646 7479646 1 + G T UCEC 7479647 + 7479627 7479667 41 AATTAACTCTTGAACTTCAGGATCATGTGAAAAAATCAACT AATTAACTCTTGAACTTCATGATCATGTGAAAAAATCAACT < 41bp 0.695783824921054 0.897811760586347 NA NA prediction 0.404055871330585 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7479647 chr12:7479646 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_36503 0 0 0 0 1 ACSM4 chr12:7479572 3'AG 7479572 Downstream 75bp 33566 chr11 12278511 12278511 1 + C T UCEC 12278512 + 12278492 12278532 41 CCGCCTACACCTTTGACTGCGATGAAGGTAACCCCAGGGGC CCGCCTACACCTTTGACTGTGATGAAGGTAACCCCAGGGGC < 41bp 0.489769829223631 0.702027882083179 NA NA prediction 0.404055764166358 Functional Gain - MICAL2 ENSG00000133816 CDS Human protein_coding chr11:12278512 chr11:12278511 synonymous SNV . 0 20 hm7G_associated_SNPs_36504 0 0 1 1 1 MICAL2 chr11:12278518 5'GT 12278518 Upstream 8bp 33567 chr2 11761033 11761033 1 + C T OV 11761034 + 11761014 11761054 41 CTCCTATACCTTTACAGATCGGGAAGACAGGTGCCTACCTG CTCCTATACCTTTACAGATTGGGAAGACAGGTGCCTACCTG < 41bp 0.507963279046105 0.709991112594373 NA NA prediction 0.404055667096535 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11761034 chr2:11761033 synonymous SNV . 0 20 hm7G_associated_SNPs_36505 0 0 1 0 1 GREB1 chr2:11761031 3'AG 11761031 Downstream 3bp 33568 chr8 70550989 70550989 1 + C T HNSC 70550990 + 70550970 70551010 41 CTCACAAATACAGTGCACACGGTAGAACGAGGCATTTTGAA CTCACAAATACAGTGCACATGGTAGAACGAGGCATTTTGAA < 41bp 0.530237178768078 0.732263102703521 NA NA prediction 0.404051847870886 Functional Gain - SULF1 ENSG00000137573 CDS Human protein_coding chr8:70550990 chr8:70550989 nonsynonymous SNV 0.951 2 20 hm7G_associated_SNPs_36507 0 0 0 0 1 SULF1 chr8:70550970 3'AG 70550970 Downstream 20bp 33569 chr16 28509242 28509242 1 + G A UCEC 28509243 + 28509223 28509263 41 CCCCTGCAGAAGCTGCGCCGGAGTCAGTCGGGGAAGCCGAG CCCCTGCAGAAGCTGCGCCAGAGTCAGTCGGGGAAGCCGAG < 41bp 0.499836865492797 0.702025323115381 NA NA prediction 0.404050646230762 Functional Gain - APOBR ENSG00000184730 CDS Human protein_coding chr16:28509243 chr16:28509242 synonymous SNV . 0 20 hm7G_associated_SNPs_36508 0 0 0 0 1 APOBR chr16:28509317 5'GT 28509317 Upstream 76bp 33570 chr7 94054936 94054936 1 + C T COAD 94054937 + 94054917 94054957 41 CACAGGGCAACCCTGGGAACGATGGTCCCCCAGGTCGCGAT CACAGGGCAACCCTGGGAATGATGGTCCCCCAGGTCGCGAT < 41bp 0.543739418413025 0.745764639368076 NA NA prediction 0.404050441910102 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94054937 chr7:94054936 synonymous SNV . 0 20 hm7G_associated_SNPs_36509 0 0 0 0 2 COL1A2 chr7:94054922 3'AG 94054922 Downstream 15bp 33571 chr7 94054936 94054936 1 + C T COAD 94054937 + 94054917 94054957 41 CACAGGGCAACCCTGGGAACGATGGTCCCCCAGGTCGCGAT CACAGGGCAACCCTGGGAATGATGGTCCCCCAGGTCGCGAT < 41bp 0.543739418413025 0.745764639368076 NA NA prediction 0.404050441910102 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94054937 chr7:94054936 synonymous SNV . 0 20 hm7G_associated_SNPs_36509 0 0 0 0 2 COL1A2 chr7:94054975 5'GT 94054975 Upstream 40bp 33572 chr8 143569806 143569806 1 + G A STAD 143569807 + 143569787 143569827 41 TGGCGGGCCACGGGTGACTGGGCCAAGGTGCCAGAGGACAG TGGCGGGCCACGGGTGACTAGGCCAAGGTGCCAGAGGACAG < 41bp 0.570884185648854 0.772909257534223 NA NA prediction 0.40405014377074 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143569807 chr8:143569806 stopgain 0.984 0 20 hm7G_associated_SNPs_36510 0 0 0 0 2 ADGRB1 chr8:143569725 3'AG 143569725 Downstream 82bp 33573 chr8 143569806 143569806 1 + G A STAD 143569807 + 143569787 143569827 41 TGGCGGGCCACGGGTGACTGGGCCAAGGTGCCAGAGGACAG TGGCGGGCCACGGGTGACTAGGCCAAGGTGCCAGAGGACAG < 41bp 0.570884185648854 0.772909257534223 NA NA prediction 0.40405014377074 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143569807 chr8:143569806 stopgain 0.984 0 20 hm7G_associated_SNPs_36510 0 0 0 0 2 ADGRB1 chr8:143569868 5'GT 143569868 Upstream 63bp 33574 chr14 72191399 72191399 1 + C T STAD 72191400 + 72191380 72191420 41 TGTCCAGGCGTCATCAGAGCGATGGCAATGAAATAGCCCAC TGTCCAGGCGTCATCAGAGTGATGGCAATGAAATAGCCCAC < 41bp 0.55086686646128 0.752890866725309 NA NA prediction 0.404048000528059 Functional Gain - SIPA1L1 ENSG00000197555 CDS Human protein_coding chr14:72191400 chr14:72191399 synonymous SNV . 0 20 hm7G_associated_SNPs_36511 0 0 0 0 1 SIPA1L1 chr14:72191387 3'AG 72191387 Downstream 13bp 33575 chr1 2426952 2426952 1 + C T CESC 2426953 + 2426933 2426973 41 GGCAGCAAGCTGAAGAAGGCGGCCAGCGTGGAGGAGGGAGA GGCAGCAAGCTGAAGAAGGTGGCCAGCGTGGAGGAGGGAGA < 41bp 0.5209655773741 0.722987945908949 NA NA prediction 0.404044737069698 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2426953 chr1:2426952 nonsynonymous SNV 0.509 0 20 hm7G_associated_SNPs_36512 0 0 0 0 1 PLCH2 chr1:2426927 3'AG 2426927 Downstream 26bp 33576 chr11 1081694 1081694 1 + C T COAD 1081695 + 1081675 1081715 41 GAAGGTGACGACTTCAAGACGGCCAGCGGGCTGGTGGAGGC GAAGGTGACGACTTCAAGATGGCCAGCGGGCTGGTGGAGGC < 41bp 0.508392027866343 0.710413255241332 NA NA prediction 0.404042454749978 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1081695 chr11:1081694 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_36514 0 0 0 0 1 MUC2 chr11:1081649 3'AG 1081649 Downstream 46bp 33577 chr8 22475230 22475230 1 + C T ACC 22475231 + 22475211 22475251 41 GGAGCAAAGCTGGAGGATTCGGAGGTCCGGTCCGTTGCCTC GGAGCAAAGCTGGAGGATTTGGAGGTCCGGTCCGTTGCCTC < 41bp 0.490963575915996 0.702020982283156 NA NA prediction 0.404041964566311 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475231 chr8:22475230 nonsynonymous SNV 0.683 1 20 hm7G_associated_SNPs_36515 0 0 1 0 2 CCAR2 chr8:22475209 3'AG 22475209 Downstream 22bp 33578 chr8 22475230 22475230 1 + C T ACC 22475231 + 22475211 22475251 41 GGAGCAAAGCTGGAGGATTCGGAGGTCCGGTCCGTTGCCTC GGAGCAAAGCTGGAGGATTTGGAGGTCCGGTCCGTTGCCTC < 41bp 0.490963575915996 0.702020982283156 NA NA prediction 0.404041964566311 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475231 chr8:22475230 nonsynonymous SNV 0.683 1 20 hm7G_associated_SNPs_36515 0 0 1 0 2 CCAR2 chr8:22475291 5'GT 22475291 Upstream 62bp 33579 chr17 78071049 78071049 1 + C T rs79588289 78071050 + 78071030 78071070 41 TGTGATTCTCCTAGGCCACCGATGAGTGCACCAAAACCGTC TGTGATTCTCCTAGGCCACTGATGAGTGCACCAAAACCGTC < 41bp 0.546217675857527 0.748238554924133 NA NA prediction 0.404041758133211 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78071050 chr17:78071049 synonymous SNV . 0 20 hm7G_associated_SNPs_36516 2 0 0 0 1 CCDC40 chr17:78071044 3'AG 78071044 Downstream 6bp 33580 chr5 80550855 80550855 1 + G A STAD 80550856 + 80550836 80550876 41 CATTACGTGCTGTCTTCTCGGGTGCGCACTGGCCGCAGCAT CATTACGTGCTGTCTTCTCAGGTGCGCACTGGCCGCAGCAT < 41bp 0.543396561351495 0.745414262910003 NA NA prediction 0.404035403117017 Functional Gain - CKMT2 ENSG00000131730 CDS Human protein_coding chr5:80550856 chr5:80550855 nonsynonymous SNV 0.621 4 20 hm7G_associated_SNPs_36519 0 0 0 0 1 CKMT2 chr5:80550812 3'AG 80550812 Downstream 44bp 33581 chr1 905909 905909 1 + C T CESC 905910 + 905890 905930 41 TCCCCGCGCAGGATGTCAGCGACTGCTACCTGGAGCTATTC TCCCCGCGCAGGATGTCAGTGACTGCTACCTGGAGCTATTC < 41bp 0.510028658955674 0.712045963186449 NA NA prediction 0.40403460846155 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:905910 chr1:905909 synonymous SNV . 0 20 hm7G_associated_SNPs_36520 0 0 0 0 2 PLEKHN1 chr1:905901 3'AG 905901 Downstream 9bp 33582 chr1 905909 905909 1 + C T CESC 905910 + 905890 905930 41 TCCCCGCGCAGGATGTCAGCGACTGCTACCTGGAGCTATTC TCCCCGCGCAGGATGTCAGTGACTGCTACCTGGAGCTATTC < 41bp 0.510028658955674 0.712045963186449 NA NA prediction 0.40403460846155 Functional Gain - PLEKHN1 ENSG00000187583 CDS Human protein_coding chr1:905910 chr1:905909 synonymous SNV . 0 20 hm7G_associated_SNPs_36520 0 0 0 0 2 PLEKHN1 chr1:905981 5'GT 905981 Upstream 73bp 33583 chrX 153040741 153040741 1 + C T UCEC 153040742 + 153040722 153040762 41 GATCGCTGCCATGTGGCTTCGCTGCTGTCGCTAGCGCTACA GATCGCTGCCATGTGGCTTTGCTGCTGTCGCTAGCGCTACA < 41bp 0.487529619220804 0.702016720393011 NA NA prediction 0.404033440786022 Functional Gain - PLXNB3 ENSG00000198753 CDS Human protein_coding chrX:153040742 chrX:153040741 nonsynonymous SNV 0.898 4 20 hm7G_associated_SNPs_36521 0 0 0 0 1 PLXNB3 chrX:153040680 3'AG 153040680 Downstream 62bp 33584 chr19 50204795 50204795 1 + C T CESC 50204796 + 50204776 50204816 41 TCCTCTCCGACGAGGACTTCGACTGGACCGCGGTCCTGGCG TCCTCTCCGACGAGGACTTTGACTGGACCGCGGTCCTGGCG < 41bp 0.547560245104146 0.749576883005079 NA NA prediction 0.404033275801866 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50204796 chr19:50204795 synonymous SNV . 0 20 hm7G_associated_SNPs_36522 0 0 0 0 2 CPT1C chr19:50204754 3'AG 50204754 Downstream 42bp 33585 chr19 50204795 50204795 1 + C T CESC 50204796 + 50204776 50204816 41 TCCTCTCCGACGAGGACTTCGACTGGACCGCGGTCCTGGCG TCCTCTCCGACGAGGACTTTGACTGGACCGCGGTCCTGGCG < 41bp 0.547560245104146 0.749576883005079 NA NA prediction 0.404033275801866 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50204796 chr19:50204795 synonymous SNV . 0 20 hm7G_associated_SNPs_36522 0 0 0 0 2 CPT1C chr19:50204891 5'GT 50204891 Upstream 97bp 33586 chr19 16987338 16987338 1 + C T rs117647779 16987339 + 16987319 16987359 41 GGCAGGTGATCATGACCATCGAGCTCCTGGACACCGAGGAG GGCAGGTGATCATGACCATTGAGCTCCTGGACACCGAGGAG < 41bp 0.522372161622458 0.724386678360172 NA NA prediction 0.404029033475429 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16987339 chr19:16987338 synonymous SNV . 0 20 hm7G_associated_SNPs_36523 0 0 1 0 2 SIN3B chr19:16987297 3'AG 16987297 Downstream 42bp 33587 chr19 16987338 16987338 1 + C T rs117647779 16987339 + 16987319 16987359 41 GGCAGGTGATCATGACCATCGAGCTCCTGGACACCGAGGAG GGCAGGTGATCATGACCATTGAGCTCCTGGACACCGAGGAG < 41bp 0.522372161622458 0.724386678360172 NA NA prediction 0.404029033475429 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16987339 chr19:16987338 synonymous SNV . 0 20 hm7G_associated_SNPs_36523 0 0 1 0 2 SIN3B chr19:16987389 5'GT 16987389 Upstream 52bp 33588 chr19 55106772 55106772 1 + C T rs202039753 55106773 + 55106753 55106793 41 TCTGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTACAG TCTGTGGGCCCCGTGAGCCTGAGTCGCAGGTGGTCGTACAG < 41bp 0.490739316543802 0.702014140030652 NA NA prediction 0.404028280061303 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55106773 chr19:55106772 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_36524 0 0 0 0 1 LILRA1 chr19:55106867 5'GT 55106867 Upstream 96bp 33589 chr7 150499405 150499405 1 + G A SKCM 150499406 + 150499386 150499426 41 GGGAGCTGCCATCTGGACAGGGGCTGTGGTGAGTAGAGCAG GGGAGCTGCCATCTGGACAAGGGCTGTGGTGAGTAGAGCAG < 41bp 0.582208708723111 0.784222051970102 NA NA prediction 0.404026686493983 Functional Gain - TMEM176A ENSG00000002933 CDS Human protein_coding chr7:150499406 chr7:150499405 nonsynonymous SNV 0.252 4 20 hm7G_associated_SNPs_36525 0 0 0 0 1 TMEM176A chr7:150499413 5'GT 150499413 Upstream 9bp 33590 chrX 18602432 18602432 1 + C T UCEC 18602433 + 18602413 18602453 41 ATGCTAATTACACAGAGTACGTTGCCACCAGATGGTATCGG ATGCTAATTACACAGAGTATGTTGCCACCAGATGGTATCGG < 41bp 0.538734967843176 0.740747601650248 NA NA prediction 0.404025267614145 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18602433 chrX:18602432 synonymous SNV . 0 20 hm7G_associated_SNPs_36526 0 0 0 0 2 CDKL5 chrX:18602383 3'AG 18602383 Downstream 50bp 33591 chrX 18602432 18602432 1 + C T UCEC 18602433 + 18602413 18602453 41 ATGCTAATTACACAGAGTACGTTGCCACCAGATGGTATCGG ATGCTAATTACACAGAGTATGTTGCCACCAGATGGTATCGG < 41bp 0.538734967843176 0.740747601650248 NA NA prediction 0.404025267614145 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18602433 chrX:18602432 synonymous SNV . 0 20 hm7G_associated_SNPs_36526 0 0 0 0 2 CDKL5 chrX:18602473 5'GT 18602473 Upstream 42bp 33592 chr10 121551532 121551532 1 + G A COAD 121551533 + 121551513 121551553 41 ACTGGGGAGAGGGACGGTCGGCCCCTCTGGCAGAAGGTACC ACTGGGGAGAGGGACGGTCAGCCCCTCTGGCAGAAGGTACC < 41bp 0.549402005517099 0.751414276621361 NA NA prediction 0.404024542208525 Functional Gain - INPP5F ENSG00000198825 CDS Human protein_coding chr10:121551533 chr10:121551532 nonsynonymous SNV 0.587 0 20 hm7G_associated_SNPs_36527 0 0 1 0 1 INPP5F chr10:121551548 5'GT 121551548 Upstream 17bp 33593 chrX 153048494 153048494 1 + G A LUAD 153048495 + 153048475 153048515 41 ACATCTTGCTGTGTGTGGGGGACGCTTACATCAGGCGCCTG ACATCTTGCTGTGTGTGGGAGACGCTTACATCAGGCGCCTG < 41bp 0.525232263422078 0.727242793329518 NA NA prediction 0.404021059814881 Functional Gain - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153048495 chrX:153048494 synonymous SNV . 0 20 hm7G_associated_SNPs_36528 0 0 0 0 2 SRPK3 chrX:153048408 3'AG 153048408 Downstream 87bp 33594 chrX 153048494 153048494 1 + G A LUAD 153048495 + 153048475 153048515 41 ACATCTTGCTGTGTGTGGGGGACGCTTACATCAGGCGCCTG ACATCTTGCTGTGTGTGGGAGACGCTTACATCAGGCGCCTG < 41bp 0.525232263422078 0.727242793329518 NA NA prediction 0.404021059814881 Functional Gain - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153048495 chrX:153048494 synonymous SNV . 0 20 hm7G_associated_SNPs_36528 0 0 0 0 2 SRPK3 chrX:153048573 5'GT 153048573 Upstream 80bp 33595 chr2 197537122 197537122 1 + C T UCEC 197537123 + 197537103 197537143 41 AAAATGCATATTTGAGGTCCGAAATAATGTCTCTTCATGAA AAAATGCATATTTGAGGTCTGAAATAATGTCTCTTCATGAA < 41bp 0.522129902012285 0.72414025190148 NA NA prediction 0.404020699778389 Functional Gain - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197537123 chr2:197537122 synonymous SNV . 0 20 hm7G_associated_SNPs_36529 0 0 0 0 2 CCDC150 chr2:197537069 3'AG 197537069 Downstream 54bp 33596 chr2 197537122 197537122 1 + C T UCEC 197537123 + 197537103 197537143 41 AAAATGCATATTTGAGGTCCGAAATAATGTCTCTTCATGAA AAAATGCATATTTGAGGTCTGAAATAATGTCTCTTCATGAA < 41bp 0.522129902012285 0.72414025190148 NA NA prediction 0.404020699778389 Functional Gain - CCDC150 ENSG00000144395 CDS Human protein_coding chr2:197537123 chr2:197537122 synonymous SNV . 0 20 hm7G_associated_SNPs_36529 0 0 0 0 2 CCDC150 chr2:197537161 5'GT 197537161 Upstream 40bp 33597 chr2 233898872 233898872 1 + G A CESC 233898873 + 233898853 233898893 41 GCCCGGCTGGATGGCCACCGGTCCATGAACCCATGCCCCTT GCCCGGCTGGATGGCCACCAGTCCATGAACCCATGCCCCTT < 41bp 0.576736194610576 0.778744984762253 NA NA prediction 0.404017580303354 Functional Gain - NEU2 ENSG00000115488 CDS Human protein_coding chr2:233898873 chr2:233898872 nonsynonymous SNV 0.851 3 20 hm7G_associated_SNPs_36530 0 0 0 0 1 NEU2 chr2:233898826 3'AG 233898826 Downstream 47bp 33598 chr4 4314796 4314796 1 + G A LUSC 4314797 + 4314777 4314817 41 TTGCAGACTCACTTACGACGGCATTCTGGTGAAAAACCATA TTGCAGACTCACTTACGACAGCATTCTGGTGAAAAACCATA < 41bp 0.521337637117158 0.723346040982285 NA NA prediction 0.404016807730254 Functional Gain - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4314797 chr4:4314796 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_36531 0 0 1 0 2 ZBTB49 chr4:4314768 3'AG 4314768 Downstream 29bp 33599 chr4 4314796 4314796 1 + G A LUSC 4314797 + 4314777 4314817 41 TTGCAGACTCACTTACGACGGCATTCTGGTGAAAAACCATA TTGCAGACTCACTTACGACAGCATTCTGGTGAAAAACCATA < 41bp 0.521337637117158 0.723346040982285 NA NA prediction 0.404016807730254 Functional Gain - ZBTB49 ENSG00000168826 CDS Human protein_coding chr4:4314797 chr4:4314796 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_36531 0 0 1 0 2 ZBTB49 chr4:4314841 5'GT 4314841 Upstream 46bp 33600 chr7 155532660 155532660 1 + C T UCEC 155532661 + 155532641 155532681 41 TCCGGCCTCACGTACAGACCGCTCAGCCTCAGGCCAGCAGC TCCGGCCTCACGTACAGACTGCTCAGCCTCAGGCCAGCAGC < 41bp 0.503742548554119 0.705749863877366 NA NA prediction 0.404014630646494 Functional Gain - RBM33 ENSG00000184863 CDS Human protein_coding chr7:155532661 chr7:155532660 synonymous SNV . 0 20 hm7G_associated_SNPs_36532 0 0 1 0 1 RBM33 chr7:155532720 5'GT 155532720 Upstream 61bp 33601 chr7 5644943 5644943 1 + G A HNSC 5644944 + 5644924 5644964 41 CGGTGGGCAGTGACTCCGCGGTCACCAGCAGCGGCGACACT CGGTGGGCAGTGACTCCGCAGTCACCAGCAGCGGCGACACT < 41bp 0.543748036592347 0.745755166851068 NA NA prediction 0.404014260517442 Functional Gain - FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5644944 chr7:5644943 synonymous SNV . 0 20 hm7G_associated_SNPs_36533 0 0 0 1 1 FSCN1 chr7:5644903 3'AG 5644903 Downstream 41bp 33602 chr5 133914244 133914244 1 + C T LUSC 133914245 + 133914225 133914265 41 AACAGCTGGCTGGCACAGTCGGTGCAGATCACAGCAGAGAA AACAGCTGGCTGGCACAGTTGGTGCAGATCACAGCAGAGAA < 41bp 0.509663061756616 0.711669930176722 NA NA prediction 0.404013736840212 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133914245 chr5:133914244 nonsynonymous SNV 0.868 3 20 hm7G_associated_SNPs_36534 0 0 0 0 2 JADE2 chr5:133914184 3'AG 133914184 Downstream 61bp 33603 chr5 133914244 133914244 1 + C T LUSC 133914245 + 133914225 133914265 41 AACAGCTGGCTGGCACAGTCGGTGCAGATCACAGCAGAGAA AACAGCTGGCTGGCACAGTTGGTGCAGATCACAGCAGAGAA < 41bp 0.509663061756616 0.711669930176722 NA NA prediction 0.404013736840212 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133914245 chr5:133914244 nonsynonymous SNV 0.868 3 20 hm7G_associated_SNPs_36534 0 0 0 0 2 JADE2 chr5:133914187 3'AG 133914187 Downstream 58bp 33604 chr17 7161956 7161956 1 + G A rs78782818 7161957 + 7161937 7161977 41 AGCCTGGATCTCCAAGAGGGGCCCTCTGTAGAGTCCCAGCC AGCCTGGATCTCCAAGAGGAGCCCTCTGTAGAGTCCCAGCC < 41bp 0.537391945794502 0.739398161786134 NA NA prediction 0.404012431983265 Functional Gain - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7161957 chr17:7161956 nonsynonymous SNV 0.449 0 20 hm7G_associated_SNPs_36537 0 0 1 0 2 ELP5 chr17:7161907 3'AG 7161907 Downstream 50bp 33605 chr17 7161956 7161956 1 + G A rs78782818 7161957 + 7161937 7161977 41 AGCCTGGATCTCCAAGAGGGGCCCTCTGTAGAGTCCCAGCC AGCCTGGATCTCCAAGAGGAGCCCTCTGTAGAGTCCCAGCC < 41bp 0.537391945794502 0.739398161786134 NA NA prediction 0.404012431983265 Functional Gain - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7161957 chr17:7161956 nonsynonymous SNV 0.449 0 20 hm7G_associated_SNPs_36537 0 0 1 0 2 ELP5 chr17:7162002 5'GT 7162002 Upstream 47bp 33606 chr19 49458973 49458973 1 + G A rs147630961 49458974 + 49458954 49458994 41 GATCGAGCAGGGCGAATGGGGGGGGAGGCACCCGAGCTGGC GATCGAGCAGGGCGAATGGAGGGGGAGGCACCCGAGCTGGC < 41bp 0.577368243298124 0.77937272272403 NA NA prediction 0.404008958851812 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49458974 chr19:49458973 nonsynonymous SNV 0.501 1 20 hm7G_associated_SNPs_36540 0 0 1 0 1 BAX chr19:49458944 3'AG 49458944 Downstream 30bp 33607 chr1 48708202 48708202 1 + C T rs139604418 48708203 + 48708183 48708223 41 GAGGCCCACGAGAGCACACCGGAGATATCCGAGAGGCCAGC GAGGCCCACGAGAGCACACTGGAGATATCCGAGAGGCCAGC < 41bp 0.538549734982702 0.740552817228808 NA NA prediction 0.404006164492214 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48708203 chr1:48708202 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36541 0 0 1 0 2 SLC5A9 chr1:48708129 3'AG 48708129 Downstream 74bp 33608 chr1 48708202 48708202 1 + C T rs139604418 48708203 + 48708183 48708223 41 GAGGCCCACGAGAGCACACCGGAGATATCCGAGAGGCCAGC GAGGCCCACGAGAGCACACTGGAGATATCCGAGAGGCCAGC < 41bp 0.538549734982702 0.740552817228808 NA NA prediction 0.404006164492214 Functional Gain - SLC5A9 ENSG00000117834 CDS Human protein_coding chr1:48708203 chr1:48708202 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36541 0 0 1 0 2 SLC5A9 chr1:48708288 5'GT 48708288 Upstream 87bp 33609 chr22 47070642 47070642 1 + G A rs144224839 47070643 + 47070623 47070663 41 ACGGGGTGCTCTACGTCACGGAGAAGTGAGTGCAGCCGTGG ACGGGGTGCTCTACGTCACAGAGAAGTGAGTGCAGCCGTGG < 41bp 0.541031015338797 0.743033206094371 NA NA prediction 0.404004381511147 Functional Gain - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47070643 chr22:47070642 synonymous SNV . 0 20 hm7G_associated_SNPs_36542 0 0 1 0 2 GRAMD4 chr22:47070554 3'AG 47070554 Downstream 89bp 33610 chr22 47070642 47070642 1 + G A rs144224839 47070643 + 47070623 47070663 41 ACGGGGTGCTCTACGTCACGGAGAAGTGAGTGCAGCCGTGG ACGGGGTGCTCTACGTCACAGAGAAGTGAGTGCAGCCGTGG < 41bp 0.541031015338797 0.743033206094371 NA NA prediction 0.404004381511147 Functional Gain - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47070643 chr22:47070642 synonymous SNV . 0 20 hm7G_associated_SNPs_36542 0 0 1 0 2 GRAMD4 chr22:47070647 5'GT 47070647 Upstream 6bp 33611 chr19 45790862 45790862 1 + C T UCEC 45790863 + 45790843 45790883 41 CCAGCCCCATGGTCAGCAGCGCCCACAACCCCAACAAGGCA CCAGCCCCATGGTCAGCAGTGCCCACAACCCCAACAAGGCA < 41bp 0.531249229770733 0.733250960403383 NA NA prediction 0.404003461265301 Functional Gain - MARK4 ENSG00000007047 CDS Human protein_coding chr19:45790863 chr19:45790862 synonymous SNV . 0 20 hm7G_associated_SNPs_36543 0 0 0 0 1 MARK4 chr19:45790922 5'GT 45790922 Upstream 61bp 33612 chrX 205463 205463 1 + G A UCEC 205464 + 205444 205484 41 ATTTCGCACGAGGAGTCCCGGCTGCTGCAGCTGCTGAACAA ATTTCGCACGAGGAGTCCCAGCTGCTGCAGCTGCTGAACAA < 41bp 0.487457235794135 0.702001726381932 NA NA prediction 0.404003452763864 Functional Gain - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205464 chrX:205463 nonsynonymous SNV 0.090 0 20 hm7G_associated_SNPs_36544 0 0 1 0 2 PLCXD1 chrX:205400 3'AG 205400 Downstream 64bp 33613 chrX 205463 205463 1 + G A UCEC 205464 + 205444 205484 41 ATTTCGCACGAGGAGTCCCGGCTGCTGCAGCTGCTGAACAA ATTTCGCACGAGGAGTCCCAGCTGCTGCAGCTGCTGAACAA < 41bp 0.487457235794135 0.702001726381932 NA NA prediction 0.404003452763864 Functional Gain - PLCXD1 ENSG00000182378 CDS Human protein_coding chrX:205464 chrX:205463 nonsynonymous SNV 0.090 0 20 hm7G_associated_SNPs_36544 0 0 1 0 2 PLCXD1 chrX:205536 5'GT 205536 Upstream 74bp 33614 chr5 74842935 74842935 1 + G T COAD 74842936 + 74842916 74842956 41 TAATAAAGCAGGAATGGAAGGATTAGATAAAGAGAAAATTA TAATAAAGCAGGAATGGAATGATTAGATAAAGAGAAAATTA < 41bp 0.668458077784755 0.870458528677969 NA NA prediction 0.404000901786427 Functional Gain - POLK ENSG00000122008 CDS Human protein_coding chr5:74842936 chr5:74842935 stopgain 1.000 1 20 hm7G_associated_SNPs_36545 0 0 0 0 1 POLK chr5:74842982 5'GT 74842982 Upstream 48bp 33615 chr1 156883285 156883285 1 + C T COAD 156883286 + 156883266 156883306 41 TGCTGACTGGAAGCACCGCCGGGAGCCCCCTCCAGGGCCTC TGCTGACTGGAAGCACCGCTGGGAGCCCCCTCCAGGGCCTC < 41bp 0.527891225079526 0.729891539951994 NA NA prediction 0.404000629744937 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156883286 chr1:156883285 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_36546 0 0 0 0 1 PEAR1 chr1:156883315 5'GT 156883315 Upstream 31bp 33616 chr1 234041447 234041447 1 + C T UCEC 234041448 + 234041428 234041468 41 GCTCACGTCCATCGAGGAGCGGATCCTGCGCATCACTGGCT GCTCACGTCCATCGAGGAGTGGATCCTGCGCATCACTGGCT < 41bp 0.505953089783604 0.70795304579539 NA NA prediction 0.403999912023573 Functional Gain - SLC35F3 ENSG00000183780 CDS Human protein_coding chr1:234041448 chr1:234041447 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36548 0 0 0 0 1 SLC35F3 chr1:234041504 5'GT 234041504 Upstream 58bp 33617 chr12 67696363 67696363 1 + G T LUSC 67696364 + 67696344 67696384 41 CCCTGATGCAATGGAGCAGGGAGAAACACCTTTAACAATGC CCCTGATGCAATGGAGCAGTGAGAAACACCTTTAACAATGC < 41bp 0.36264781048922 0.701999931217106 NA NA prediction 0.403999862434212 Functional Gain - CAND1 ENSG00000111530 CDS Human protein_coding chr12:67696364 chr12:67696363 stopgain 1.000 1 20 hm7G_associated_SNPs_36549 0 0 1 0 1 CAND1 chr12:67696395 5'GT 67696395 Upstream 33bp 33618 chr8 22458397 22458397 1 + G T LIHC 22458398 + 22458378 22458418 41 GCTGACTCTCCATGCAGATGGGGCTGGCGAGGGCCTGGCAC GCTGACTCTCCATGCAGATTGGGCTGGCGAGGGCCTGGCAC < 41bp 0.354837833028412 0.701999729212427 NA NA prediction 0.403999458424853 Functional Gain - C8orf58 ENSG00000241852;ENSG00000248235 CDS Human other chr8:22458398 chr8:22458397 nonsynonymous SNV 0.501 3 20 hm7G_associated_SNPs_36550 0 0 0 0 1 C8orf58 chr8:22458395 3'AG 22458395 Downstream 3bp 33619 chr2 241813413 241813413 1 + C T LIHC 241813414 + 241813394 241813434 41 GGCATCGACATCCTGTACTCGGGCTCCCAGAAGGCCCTGAA GGCATCGACATCCTGTACTTGGGCTCCCAGAAGGCCCTGAA < 41bp 0.523431382797647 0.725427712117095 NA NA prediction 0.403992658638896 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241813414 chr2:241813413 nonsynonymous SNV 0.019 4 20 hm7G_associated_SNPs_36553 1 0 0 0 2 AGXT chr2:241813395 3'AG 241813395 Downstream 19bp 33620 chr2 241813413 241813413 1 + C T LIHC 241813414 + 241813394 241813434 41 GGCATCGACATCCTGTACTCGGGCTCCCAGAAGGCCCTGAA GGCATCGACATCCTGTACTTGGGCTCCCAGAAGGCCCTGAA < 41bp 0.523431382797647 0.725427712117095 NA NA prediction 0.403992658638896 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241813414 chr2:241813413 nonsynonymous SNV 0.019 4 20 hm7G_associated_SNPs_36553 1 0 0 0 2 AGXT chr2:241813479 5'GT 241813479 Upstream 67bp 33621 chr16 85954792 85954792 1 + G A GBM 85954793 + 85954773 85954813 41 CTGTGATGCAGGCCCCCGAGGAGCCGCCGCCAGACCAGGTC CTGTGATGCAGGCCCCCGAAGAGCCGCCGCCAGACCAGGTC < 41bp 0.540634914509273 0.742628931923479 NA NA prediction 0.403988034828412 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85954793 chr16:85954792 synonymous SNV . 0 20 hm7G_associated_SNPs_36555 0 0 0 0 1 IRF8 chr16:85954712 3'AG 85954712 Downstream 81bp 33622 chr10 134008424 134008424 1 + C T HNSC 134008425 + 134008405 134008445 41 CGGGAGCGGGCGGACAGCGCGGCCTGCTGCGACTACTCCCT CGGGAGCGGGCGGACAGCGTGGCCTGCTGCGACTACTCCCT < 41bp 0.49197788818925 0.701992765915246 NA NA prediction 0.403985531830493 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134008425 chr10:134008424 nonsynonymous SNV 0.126 2 20 hm7G_associated_SNPs_36556 0 0 0 0 1 DPYSL4 chr10:134008349 3'AG 134008349 Downstream 76bp 33623 chr15 85382261 85382261 1 + C T STAD 85382262 + 85382242 85382282 41 GGATGATACGGAGCTGGACCGCTACTGTGGCTTGCCAAAAT GGATGATACGGAGCTGGACTGCTACTGTGGCTTGCCAAAAT < 41bp 0.541963439857434 0.743954200051256 NA NA prediction 0.403981520387643 Functional Gain - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85382262 chr15:85382261 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36559 0 0 1 0 2 ALPK3 chr15:85382211 3'AG 85382211 Downstream 51bp 33624 chr15 85382261 85382261 1 + C T STAD 85382262 + 85382242 85382282 41 GGATGATACGGAGCTGGACCGCTACTGTGGCTTGCCAAAAT GGATGATACGGAGCTGGACTGCTACTGTGGCTTGCCAAAAT < 41bp 0.541963439857434 0.743954200051256 NA NA prediction 0.403981520387643 Functional Gain - ALPK3 ENSG00000136383 CDS Human protein_coding chr15:85382262 chr15:85382261 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36559 0 0 1 0 2 ALPK3 chr15:85382328 5'GT 85382328 Upstream 68bp 33625 chrX 48116688 48116688 1 + C T SKCM 48116689 + 48116669 48116709 41 CTGGTGCCATGAACGGAGACGACACCTTTGCAAAGAGACCC CTGGTGCCATGAACGGAGATGACACCTTTGCAAAGAGACCC < 41bp 0.525247890730147 0.727236936934593 NA NA prediction 0.403978092408892 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48116689 chrX:48116688 synonymous SNV . 0 20 hm7G_associated_SNPs_36561 0 0 1 0 2 SSX1 chrX:48116657 3'AG 48116657 Downstream 32bp 33626 chrX 48116688 48116688 1 + C T SKCM 48116689 + 48116669 48116709 41 CTGGTGCCATGAACGGAGACGACACCTTTGCAAAGAGACCC CTGGTGCCATGAACGGAGATGACACCTTTGCAAAGAGACCC < 41bp 0.525247890730147 0.727236936934593 NA NA prediction 0.403978092408892 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48116689 chrX:48116688 synonymous SNV . 0 20 hm7G_associated_SNPs_36561 0 0 1 0 2 SSX1 chrX:48116745 5'GT 48116745 Upstream 58bp 33627 chr1 227172994 227172994 1 + C T LUSC 227172995 + 227172975 227173015 41 CAGGGACAGGGAGACTGTGCGGGCGAAATCCATAGAGATGA CAGGGACAGGGAGACTGTGTGGGCGAAATCCATAGAGATGA < 41bp 0.544623213258485 0.746611498441425 NA NA prediction 0.40397657036588 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227172995 chr1:227172994 nonsynonymous SNV 0.164 2 20 hm7G_associated_SNPs_36562 0 0 1 0 2 COQ8A chr1:227172955 3'AG 227172955 Downstream 40bp 33628 chr1 227172994 227172994 1 + C T LUSC 227172995 + 227172975 227173015 41 CAGGGACAGGGAGACTGTGCGGGCGAAATCCATAGAGATGA CAGGGACAGGGAGACTGTGTGGGCGAAATCCATAGAGATGA < 41bp 0.544623213258485 0.746611498441425 NA NA prediction 0.40397657036588 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227172995 chr1:227172994 nonsynonymous SNV 0.164 2 20 hm7G_associated_SNPs_36562 0 0 1 0 2 COQ8A chr1:227173041 5'GT 227173041 Upstream 48bp 33629 chr19 41066133 41066133 1 + C T SKCM 41066134 + 41066114 41066154 41 GTGAACATGCCGAGGCCATCGCTAGCCGGGAGCAGGAGGTG GTGAACATGCCGAGGCCATTGCTAGCCGGGAGCAGGAGGTG < 41bp 0.517785318015849 0.719773367663889 NA NA prediction 0.403976099296079 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41066134 chr19:41066133 synonymous SNV . 0 20 hm7G_associated_SNPs_36563 0 0 0 0 1 SPTBN4 chr19:41066065 3'AG 41066065 Downstream 69bp 33630 chr12 64519801 64519801 1 + C T COAD 64519802 + 64519782 64519822 41 CAAGTTTGACTATGTTGGGCGGTCTGCCAGAGAACTATCCT CAAGTTTGACTATGTTGGGTGGTCTGCCAGAGAACTATCCT < 41bp 0.488091869634396 0.701987931748106 NA NA prediction 0.403975863496212 Functional Gain - SRGAP1 ENSG00000196935 CDS Human protein_coding chr12:64519802 chr12:64519801 nonsynonymous SNV 0.940 3 20 hm7G_associated_SNPs_36564 0 0 1 0 1 SRGAP1 chr12:64519757 3'AG 64519757 Downstream 45bp 33631 chr10 105146974 105146974 1 + C T rs139768406 105146975 + 105146955 105146995 41 AGCCTTTAAGAATATTTGCCGGCCATCTTGCTGATGTGAAT AGCCTTTAAGAATATTTGCTGGCCATCTTGCTGATGTGAAT < 41bp 0.548288923813399 0.750276032010819 NA NA prediction 0.403974216394841 Functional Gain - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105146975 chr10:105146974 synonymous SNV . 0 20 hm7G_associated_SNPs_36565 0 0 1 0 1 TAF5 chr10:105146932 3'AG 105146932 Downstream 43bp 33632 chr19 36034636 36034636 1 + C T ESCA 36034637 + 36034617 36034657 41 TGGACCTGACCTGCCGCCTCGCCCAGCCTGCCCCCTACTCA TGGACCTGACCTGCCGCCTTGCCCAGCCTGCCCCCTACTCA < 41bp 0.532416732426133 0.734398449260304 NA NA prediction 0.403963433668342 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034637 chr19:36034636 synonymous SNV . 0 20 hm7G_associated_SNPs_36569 0 0 0 0 2 GAPDHS chr19:36034567 3'AG 36034567 Downstream 70bp 33633 chr19 36034636 36034636 1 + C T ESCA 36034637 + 36034617 36034657 41 TGGACCTGACCTGCCGCCTCGCCCAGCCTGCCCCCTACTCA TGGACCTGACCTGCCGCCTTGCCCAGCCTGCCCCCTACTCA < 41bp 0.532416732426133 0.734398449260304 NA NA prediction 0.403963433668342 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36034637 chr19:36034636 synonymous SNV . 0 20 hm7G_associated_SNPs_36569 0 0 0 0 2 GAPDHS chr19:36034729 5'GT 36034729 Upstream 94bp 33634 chr1 12066617 12066617 1 + C T STAD 12066618 + 12066598 12066638 41 CAGCGTCCCATCCCTCTGACGCCAGCCAACCCCAGCATGCC CAGCGTCCCATCCCTCTGATGCCAGCCAACCCCAGCATGCC < 41bp 0.487525268438434 0.701979796848756 NA NA prediction 0.403959593697511 Functional Gain - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12066618 chr1:12066617 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_36570 0 0 1 0 1 MFN2 chr1:12066595 3'AG 12066595 Downstream 23bp 33635 chr20 57288560 57288560 1 + C T SKCM 57288561 + 57288541 57288581 41 CTTGCAAGGACCTGGGGGCCGACATCATCCTGGACATGGCC CTTGCAAGGACCTGGGGGCTGACATCATCCTGGACATGGCC < 41bp 0.523848370342233 0.725826631556907 NA NA prediction 0.403956522429348 Functional Gain - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57288561 chr20:57288560 synonymous SNV . 0 20 hm7G_associated_SNPs_36571 0 0 1 0 2 NPEPL1 chr20:57288476 3'AG 57288476 Downstream 85bp 33636 chr20 57288560 57288560 1 + C T SKCM 57288561 + 57288541 57288581 41 CTTGCAAGGACCTGGGGGCCGACATCATCCTGGACATGGCC CTTGCAAGGACCTGGGGGCTGACATCATCCTGGACATGGCC < 41bp 0.523848370342233 0.725826631556907 NA NA prediction 0.403956522429348 Functional Gain - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57288561 chr20:57288560 synonymous SNV . 0 20 hm7G_associated_SNPs_36571 0 0 1 0 2 NPEPL1 chr20:57288599 5'GT 57288599 Upstream 40bp 33637 chr20 30414482 30414482 1 + C T BRCA 30414483 + 30414463 30414503 41 TCCAGCTGTATGCAGCCATCGAGACTCCGCATGAGATCGTC TCCAGCTGTATGCAGCCATTGAGACTCCGCATGAGATCGTC < 41bp 0.544815180937572 0.746789402185497 NA NA prediction 0.403948442495852 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414483 chr20:30414482 synonymous SNV . 0 20 hm7G_associated_SNPs_36574 0 0 0 0 2 MYLK2 chr20:30414408 3'AG 30414408 Downstream 75bp 33638 chr20 30414482 30414482 1 + C T BRCA 30414483 + 30414463 30414503 41 TCCAGCTGTATGCAGCCATCGAGACTCCGCATGAGATCGTC TCCAGCTGTATGCAGCCATTGAGACTCCGCATGAGATCGTC < 41bp 0.544815180937572 0.746789402185497 NA NA prediction 0.403948442495852 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30414483 chr20:30414482 synonymous SNV . 0 20 hm7G_associated_SNPs_36574 0 0 0 0 2 MYLK2 chr20:30414517 5'GT 30414517 Upstream 36bp 33639 chr17 25932507 25932507 1 + C T COAD 25932508 + 25932488 25932528 41 AGGCAGAAGACGATGAGGACGAGGTGGACGACTTGCCGAGC AGGCAGAAGACGATGAGGATGAGGTGGACGACTTGCCGAGC < 41bp 0.553509659571884 0.755483016849972 NA NA prediction 0.403946714556176 Functional Gain - KSR1 ENSG00000141068 CDS Human protein_coding chr17:25932508 chr17:25932507 synonymous SNV . 0 20 hm7G_associated_SNPs_36575 0 0 1 0 1 KSR1 chr17:25932460 3'AG 25932460 Downstream 48bp 33640 chr12 81647354 81647354 1 + C T COAD 81647355 + 81647335 81647375 41 TGGCCCTGTGGCTGCTTTTCGAAATGCAGTGTTTGTCAAAC TGGCCCTGTGGCTGCTTTTTGAAATGCAGTGTTTGTCAAAC < 41bp 0.491825826895951 0.70197297319344 NA NA prediction 0.40394594638688 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81647355 chr12:81647354 stopgain 1.000 1 20 hm7G_associated_SNPs_36576 0 0 0 0 2 ACSS3 chr12:81647274 3'AG 81647274 Downstream 81bp 33641 chr12 81647354 81647354 1 + C T COAD 81647355 + 81647335 81647375 41 TGGCCCTGTGGCTGCTTTTCGAAATGCAGTGTTTGTCAAAC TGGCCCTGTGGCTGCTTTTTGAAATGCAGTGTTTGTCAAAC < 41bp 0.491825826895951 0.70197297319344 NA NA prediction 0.40394594638688 Functional Gain - ACSS3 ENSG00000111058 CDS Human protein_coding chr12:81647355 chr12:81647354 stopgain 1.000 1 20 hm7G_associated_SNPs_36576 0 0 0 0 2 ACSS3 chr12:81647449 5'GT 81647449 Upstream 96bp 33642 chr11 1858497 1858497 1 + G A SKCM 1858498 + 1858478 1858518 41 CGTAGGCAAGGTGCACCTGGGTGCCCGGGCCTCGGGGCAGC CGTAGGCAAGGTGCACCTGAGTGCCCGGGCCTCGGGGCAGC < 41bp 0.576882735780941 0.778853015604333 NA NA prediction 0.403940559646783 Functional Gain - SYT8 ENSG00000149043 CDS Human protein_coding chr11:1858498 chr11:1858497 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_36577 0 0 0 0 1 SYT8 chr11:1858422 3'AG 1858422 Downstream 76bp 33643 chr4 74735435 74735435 1 + G A BLCA 74735436 + 74735416 74735456 41 AGTGCTTGCAGACCCTGCAGGGAATTCACCCCAAGAACATC AGTGCTTGCAGACCCTGCAAGGAATTCACCCCAAGAACATC < 41bp 0.562548673686611 0.764518791481998 NA NA prediction 0.403940235590774 Functional Gain - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735436 chr4:74735435 synonymous SNV . 0 20 hm7G_associated_SNPs_36578 0 0 0 0 3 CXCL1 chr4:74735363 3'AG 74735363 Downstream 73bp 33644 chr4 74735435 74735435 1 + G A BLCA 74735436 + 74735416 74735456 41 AGTGCTTGCAGACCCTGCAGGGAATTCACCCCAAGAACATC AGTGCTTGCAGACCCTGCAAGGAATTCACCCCAAGAACATC < 41bp 0.562548673686611 0.764518791481998 NA NA prediction 0.403940235590774 Functional Gain - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735436 chr4:74735435 synonymous SNV . 0 20 hm7G_associated_SNPs_36578 0 0 0 0 3 CXCL1 chr4:74735386 3'AG 74735386 Downstream 50bp 33645 chr4 74735435 74735435 1 + G A BLCA 74735436 + 74735416 74735456 41 AGTGCTTGCAGACCCTGCAGGGAATTCACCCCAAGAACATC AGTGCTTGCAGACCCTGCAAGGAATTCACCCCAAGAACATC < 41bp 0.562548673686611 0.764518791481998 NA NA prediction 0.403940235590774 Functional Gain - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735436 chr4:74735435 synonymous SNV . 0 20 hm7G_associated_SNPs_36578 0 0 0 0 3 CXCL1 chr4:74735509 5'GT 74735509 Upstream 75bp 33646 chr1 160771642 160771642 1 + G A SKCM 160771643 + 160771623 160771663 41 CCACCGCACACTCCTGGAGGGCAGCGGCCTGGAGTCCATCA CCACCGCACACTCCTGGAGAGCAGCGGCCTGGAGTCCATCA < 41bp 0.55957702810627 0.761546393725824 NA NA prediction 0.403938731239108 Functional Gain - LY9 ENSG00000122224 CDS Human protein_coding chr1:160771643 chr1:160771642 nonsynonymous SNV 0.019 1 20 hm7G_associated_SNPs_36579 0 0 0 0 1 LY9 chr1:160771580 3'AG 160771580 Downstream 63bp 33647 chrX 48372643 48372643 1 + C T COAD 48372644 + 48372624 48372664 41 CCAGGTGGCTGCGAGCCTACGAGAGTGCTGTCTCCTTCCAC CCAGGTGGCTGCGAGCCTATGAGAGTGCTGTCTCCTTCCAC < 41bp 0.491788360625866 0.701963418864667 NA NA prediction 0.403926837729335 Functional Gain - PORCN ENSG00000102312 CDS Human protein_coding chrX:48372644 chrX:48372643 synonymous SNV . 0 20 hm7G_associated_SNPs_36582 0 0 0 0 1 PORCN chrX:48372628 3'AG 48372628 Downstream 16bp 33648 chr8 99440258 99440258 1 + G A rs541131650 99440259 + 99440239 99440279 41 AGGCTAACGTCGAGGACGGGGAGATCCGCATCAATGTGGGC AGGCTAACGTCGAGGACGGAGAGATCCGCATCAATGTGGGC < 41bp 0.526861960786766 0.728825231497316 NA NA prediction 0.403926541421101 Functional Gain - KCNS2 ENSG00000156486 CDS Human protein_coding chr8:99440259 chr8:99440258 synonymous SNV . 0 20 hm7G_associated_SNPs_36583 0 0 0 0 1 KCNS2 chr8:99440166 3'AG 99440166 Downstream 93bp 33649 chr22 31529903 31529903 1 + C T UCEC 31529904 + 31529884 31529924 41 CAGCATTTCCCCCAGATCTCGCTGCCTTCCTCGGAGTTGGC CAGCATTTCCCCCAGATCTTGCTGCCTTCCTCGGAGTTGGC < 41bp 0.490170940776843 0.701961131926907 NA NA prediction 0.403922263853813 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31529904 chr22:31529903 nonsynonymous SNV 0.909 1 20 hm7G_associated_SNPs_36585 0 0 0 0 1 INPP5J chr22:31529899 3'AG 31529899 Downstream 5bp 33650 chr7 75028277 75028277 1 + G A BLCA 75028278 + 75028258 75028298 41 TTCAGTGTCCCATCTGCCTGGAGGTCTTCAAGGAGTCCCTA TTCAGTGTCCCATCTGCCTAGAGGTCTTCAAGGAGTCCCTA < 41bp 0.569347275413014 0.771306717785116 NA NA prediction 0.403918884744202 Functional Gain - TRIM73 ENSG00000178809 CDS Human protein_coding chr7:75028278 chr7:75028277 synonymous SNV . 0 20 hm7G_associated_SNPs_36586 0 0 1 0 1 TRIM73 chr7:75028200 3'AG 75028200 Downstream 78bp 33651 chr3 183823756 183823756 1 + C T SKCM 183823757 + 183823737 183823777 41 CCAGTGGCACCCCCCTCATCGGTATGGCTCCTCCCACCTTT CCAGTGGCACCCCCCTCATTGGTATGGCTCCTCCCACCTTT < 41bp 0.520489087701833 0.722446819430449 NA NA prediction 0.403915463457231 Functional Gain - HTR3E ENSG00000186038 CDS Human protein_coding chr3:183823757 chr3:183823756 synonymous SNV . 0 20 hm7G_associated_SNPs_36587 0 0 0 0 1 HTR3E chr3:183823757 5'GT 183823757 Upstream 2bp 33652 chr19 55417933 55417933 1 + G A SKCM 55417934 + 55417914 55417954 41 CCCATTTCATGGTTCCAAAGGAAAAGCAAGTGACCATCTGT CCCATTTCATGGTTCCAAAAGAAAAGCAAGTGACCATCTGT < 41bp 0.504151835197686 0.706108770762362 NA NA prediction 0.403913871129352 Functional Gain - NCR1 ENSG00000189430 CDS Human protein_coding chr19:55417934 chr19:55417933 synonymous SNV . 0 20 hm7G_associated_SNPs_36588 0 0 0 0 1 NCR1 chr19:55417881 3'AG 55417881 Downstream 53bp 33653 chr8 74231402 74231402 1 + G A BLCA 74231403 + 74231383 74231423 41 TGACAGTTGCAAGTTCCTTGGGATTGTTCAGTACTGCCGGA TGACAGTTGCAAGTTCCTTAGGATTGTTCAGTACTGCCGGA < 41bp 0.511686411197977 0.71364301385002 NA NA prediction 0.403913205304086 Functional Gain - RDH10 ENSG00000121039 CDS Human protein_coding chr8:74231403 chr8:74231402 synonymous SNV . 0 20 hm7G_associated_SNPs_36589 0 0 1 0 2 RDH10 chr8:74231331 3'AG 74231331 Downstream 72bp 33654 chr8 74231402 74231402 1 + G A BLCA 74231403 + 74231383 74231423 41 TGACAGTTGCAAGTTCCTTGGGATTGTTCAGTACTGCCGGA TGACAGTTGCAAGTTCCTTAGGATTGTTCAGTACTGCCGGA < 41bp 0.511686411197977 0.71364301385002 NA NA prediction 0.403913205304086 Functional Gain - RDH10 ENSG00000121039 CDS Human protein_coding chr8:74231403 chr8:74231402 synonymous SNV . 0 20 hm7G_associated_SNPs_36589 0 0 1 0 2 RDH10 chr8:74231429 5'GT 74231429 Upstream 28bp 33655 chr11 66297298 66297298 1 + C T CESC 66297299 + 66297279 66297319 41 CTTCTCCACAGCCATGCACCGGGCCTTCCAGACAGACCTAT CTTCTCCACAGCCATGCACTGGGCCTTCCAGACAGACCTAT < 41bp 0.549660505601487 0.751617047983627 NA NA prediction 0.403913084764279 Functional Gain - BBS1 ENSG00000174483;ENSG00000256349 CDS Human other chr11:66297299 chr11:66297298 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36590 0 0 0 0 1 BBS1 chr11:66297290 3'AG 66297290 Downstream 9bp 33656 chr19 35832309 35832309 1 + C T SKCM 35832310 + 35832290 35832330 41 GAGATTCACTCTGGAAACTCGGTCAGCCTCCAATGTGACTT GAGATTCACTCTGGAAACTTGGTCAGCCTCCAATGTGACTT < 41bp 0.536295850394872 0.738252038519258 NA NA prediction 0.403912376248772 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35832310 chr19:35832309 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_36591 0 0 0 0 1 CD22 chr19:35832246 3'AG 35832246 Downstream 64bp 33657 chrX 68059898 68059898 1 + C T UCEC 68059899 + 68059879 68059919 41 CACACAGGCCCCTGGTAGTCGGGGCTCCCTGGGTGACTCTG CACACAGGCCCCTGGTAGTTGGGGCTCCCTGGGTGACTCTG < 41bp 0.531113364499752 0.733069464831145 NA NA prediction 0.403912200662785 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059899 chrX:68059898 nonsynonymous SNV 0.493 3 20 hm7G_associated_SNPs_36592 0 0 0 0 2 EFNB1 chrX:68059803 3'AG 68059803 Downstream 96bp 33658 chrX 68059898 68059898 1 + C T UCEC 68059899 + 68059879 68059919 41 CACACAGGCCCCTGGTAGTCGGGGCTCCCTGGGTGACTCTG CACACAGGCCCCTGGTAGTTGGGGCTCCCTGGGTGACTCTG < 41bp 0.531113364499752 0.733069464831145 NA NA prediction 0.403912200662785 Functional Gain - EFNB1 ENSG00000090776 CDS Human protein_coding chrX:68059899 chrX:68059898 nonsynonymous SNV 0.493 3 20 hm7G_associated_SNPs_36592 0 0 0 0 2 EFNB1 chrX:68059931 5'GT 68059931 Upstream 34bp 33659 chr4 155718042 155718042 1 + C T CESC 155718043 + 155718023 155718063 41 ATGGACAAAGGAAATTTGGCGGTCCTCCTCCAGGTGTGGAT ATGGACAAAGGAAATTTGGTGGTCCTCCTCCAGGTGTGGAT < 41bp 0.516575968824656 0.718531717938477 NA NA prediction 0.403911498227641 Functional Gain - RBM46 ENSG00000151962 CDS Human protein_coding chr4:155718043 chr4:155718042 synonymous SNV . 0 20 hm7G_associated_SNPs_36593 0 0 0 0 1 RBM46 chr4:155718055 5'GT 155718055 Upstream 14bp 33660 chr20 61943079 61943079 1 + C T LUSC 61943080 + 61943060 61943100 41 CCCTGAGGGCAGCGAGGCCCGGGGCATCCGTGCCAGGACCC CCCTGAGGGCAGCGAGGCCTGGGGCATCCGTGCCAGGACCC < 41bp 0.498861775654384 0.701952945590765 NA NA prediction 0.403905891181531 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61943080 chr20:61943079 nonsynonymous SNV 0.122 2 20 hm7G_associated_SNPs_36596 0 0 0 0 1 COL20A1 chr20:61943100 5'GT 61943100 Upstream 22bp 33661 chr11 66330604 66330604 1 + G A STAD 66330605 + 66330585 66330625 41 ACAAGGGATCCGGGGCCCCGGCTGGAGCCCTGGACTACGTG ACAAGGGATCCGGGGCCCCAGCTGGAGCCCTGGACTACGTG < 41bp 0.567307615788624 0.769256000878154 NA NA prediction 0.403896770179061 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66330605 chr11:66330604 unknown . 0 20 hm7G_associated_SNPs_36597 0 0 0 0 1 ACTN3 chr11:66330506 3'AG 66330506 Downstream 99bp 33662 chr6 304637 304637 1 + G A rs151205644 304638 + 304618 304658 41 TCTCTCCTAGATCCTGCCCGGCCTGTACATCGGCAACTTCA TCTCTCCTAGATCCTGCCCAGCCTGTACATCGGCAACTTCA < 41bp 0.549006490639999 0.750954316884636 NA NA prediction 0.403895652489273 Functional Gain - DUSP22 ENSG00000112679 CDS Human protein_coding chr6:304638 chr6:304637 nonsynonymous SNV 0.931 2 20 hm7G_associated_SNPs_36599 0 0 1 0 1 DUSP22 chr6:304661 5'GT 304661 Upstream 25bp 33663 chr19 42855429 42855429 1 + G A ACC 42855430 + 42855410 42855450 41 GACGCGGCATGCAGCCGGCGGGGCCGGGGTCGGGGTGCCCT GACGCGGCATGCAGCCGGCAGGGCCGGGGTCGGGGTGCCCT < 41bp 0.575796765200804 0.777744108983935 NA NA prediction 0.403894687566262 Functional Gain - MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855430 chr19:42855429 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_36601 0 0 0 0 2 MEGF8 chr19:42855368 3'AG 42855368 Downstream 62bp 33664 chr19 42855429 42855429 1 + G A ACC 42855430 + 42855410 42855450 41 GACGCGGCATGCAGCCGGCGGGGCCGGGGTCGGGGTGCCCT GACGCGGCATGCAGCCGGCAGGGCCGGGGTCGGGGTGCCCT < 41bp 0.575796765200804 0.777744108983935 NA NA prediction 0.403894687566262 Functional Gain - MEGF8 ENSG00000105429 CDS Human protein_coding chr19:42855430 chr19:42855429 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_36601 0 0 0 0 2 MEGF8 chr19:42855486 5'GT 42855486 Upstream 58bp 33665 chr17 46933492 46933492 1 + C T BLCA 46933493 + 46933473 46933513 41 CAAAAAGACTGAGTGAGAACGAAATTATATGTAATGCTCTG CAAAAAGACTGAGTGAGAATGAAATTATATGTAATGCTCTG < 41bp 0.508486308161947 0.710430182592983 NA NA prediction 0.403887748862072 Functional Gain - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46933493 chr17:46933492 synonymous SNV . 0 20 hm7G_associated_SNPs_36604 0 0 1 0 2 CALCOCO2 chr17:46933454 3'AG 46933454 Downstream 39bp 33666 chr17 46933492 46933492 1 + C T BLCA 46933493 + 46933473 46933513 41 CAAAAAGACTGAGTGAGAACGAAATTATATGTAATGCTCTG CAAAAAGACTGAGTGAGAATGAAATTATATGTAATGCTCTG < 41bp 0.508486308161947 0.710430182592983 NA NA prediction 0.403887748862072 Functional Gain - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46933493 chr17:46933492 synonymous SNV . 0 20 hm7G_associated_SNPs_36604 0 0 1 0 2 CALCOCO2 chr17:46933549 5'GT 46933549 Upstream 58bp 33667 chr9 127217284 127217284 1 + G A rs77622235 127217285 + 127217265 127217305 41 GAAGAGGGTGGTGGCCCTCGGGGCTGGGGACCCAGAGCTGT GAAGAGGGTGGTGGCCCTCAGGGCTGGGGACCCAGAGCTGT < 41bp 0.464227144639489 0.701943453030827 NA NA prediction 0.403886906061654 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127217285 chr9:127217284 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_36605 0 0 0 0 1 PSMB7;NR5A1 chr9:127217376 5'GT 127217376 Upstream 93bp 33668 chr17 42855399 42855399 1 + C T COAD 42855400 + 42855380 42855420 41 ATCCATAACCCCCTGCCCACGTCCCCACCCACGGGGGAGAC ATCCATAACCCCCTGCCCATGTCCCCACCCACGGGGGAGAC < 41bp 0.523752781634403 0.725695839638716 NA NA prediction 0.403886116008627 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855400 chr17:42855399 nonsynonymous SNV 0.624 1 20 hm7G_associated_SNPs_36606 0 0 0 0 2 ADAM11 chr17:42855320 3'AG 42855320 Downstream 80bp 33669 chr17 42855399 42855399 1 + C T COAD 42855400 + 42855380 42855420 41 ATCCATAACCCCCTGCCCACGTCCCCACCCACGGGGGAGAC ATCCATAACCCCCTGCCCATGTCCCCACCCACGGGGGAGAC < 41bp 0.523752781634403 0.725695839638716 NA NA prediction 0.403886116008627 Functional Gain - ADAM11 ENSG00000073670 CDS Human protein_coding chr17:42855400 chr17:42855399 nonsynonymous SNV 0.624 1 20 hm7G_associated_SNPs_36606 0 0 0 0 2 ADAM11 chr17:42855434 5'GT 42855434 Upstream 36bp 33670 chr10 134563304 134563304 1 + C T BLCA 134563305 + 134563285 134563325 41 AGTTAGAAAAGAAACTCTTCGACTACTTCAACCAGGAGGTT AGTTAGAAAAGAAACTCTTTGACTACTTCAACCAGGAGGTT < 41bp 0.488752482993895 0.701942286053093 NA NA prediction 0.403884572106186 Functional Gain - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134563305 chr10:134563304 synonymous SNV . 0 20 hm7G_associated_SNPs_36607 0 0 0 0 2 INPP5A chr10:134563275 3'AG 134563275 Downstream 30bp 33671 chr10 134563304 134563304 1 + C T BLCA 134563305 + 134563285 134563325 41 AGTTAGAAAAGAAACTCTTCGACTACTTCAACCAGGAGGTT AGTTAGAAAAGAAACTCTTTGACTACTTCAACCAGGAGGTT < 41bp 0.488752482993895 0.701942286053093 NA NA prediction 0.403884572106186 Functional Gain - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134563305 chr10:134563304 synonymous SNV . 0 20 hm7G_associated_SNPs_36607 0 0 0 0 2 INPP5A chr10:134563349 5'GT 134563349 Upstream 46bp 33672 chr6 132181556 132181556 1 + C T HNSC 132181557 + 132181537 132181577 41 CAGAATCTCATGGCATAATCGACAATAAAATGTATGATCCC CAGAATCTCATGGCATAATTGACAATAAAATGTATGATCCC < 41bp 0.512661069758467 0.714603140407943 NA NA prediction 0.403884141298952 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132181557 chr6:132181556 synonymous SNV . 0 20 hm7G_associated_SNPs_36608 0 0 1 0 2 ENPP1 chr6:132181527 3'AG 132181527 Downstream 30bp 33673 chr6 132181556 132181556 1 + C T HNSC 132181557 + 132181537 132181577 41 CAGAATCTCATGGCATAATCGACAATAAAATGTATGATCCC CAGAATCTCATGGCATAATTGACAATAAAATGTATGATCCC < 41bp 0.512661069758467 0.714603140407943 NA NA prediction 0.403884141298952 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132181557 chr6:132181556 synonymous SNV . 0 20 hm7G_associated_SNPs_36608 0 0 1 0 2 ENPP1 chr6:132181646 5'GT 132181646 Upstream 91bp 33674 chr17 61615462 61615462 1 + C T rs530673616 61615463 + 61615443 61615483 41 ATCTTCGGGAACGTGTCCGCGATCATCCAGCGCCTGTACTC ATCTTCGGGAACGTGTCCGTGATCATCCAGCGCCTGTACTC < 41bp 0.537615374480426 0.739552534539282 NA NA prediction 0.403874320117714 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61615463 chr17:61615462 nonsynonymous SNV 0.948 5 20 hm7G_associated_SNPs_36612 0 0 0 0 1 KCNH6 chr17:61615426 3'AG 61615426 Downstream 37bp 33675 chr1 116226619 116226619 1 + G A BRCA 116226620 + 116226600 116226640 41 ATGATTGCTGCAGCTGCTCGGCGCAGGGACTCAAGCCACAA ATGATTGCTGCAGCTGCTCAGCGCAGGGACTCAAGCCACAA < 41bp 0.518761880135499 0.720695362480415 NA NA prediction 0.403866964689832 Functional Gain - VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116226620 chr1:116226619 nonsynonymous SNV 0.829 2 20 hm7G_associated_SNPs_36613 0 0 1 0 2 VANGL1 chr1:116226565 3'AG 116226565 Downstream 55bp 33676 chr1 116226619 116226619 1 + G A BRCA 116226620 + 116226600 116226640 41 ATGATTGCTGCAGCTGCTCGGCGCAGGGACTCAAGCCACAA ATGATTGCTGCAGCTGCTCAGCGCAGGGACTCAAGCCACAA < 41bp 0.518761880135499 0.720695362480415 NA NA prediction 0.403866964689832 Functional Gain - VANGL1 ENSG00000173218 CDS Human protein_coding chr1:116226620 chr1:116226619 nonsynonymous SNV 0.829 2 20 hm7G_associated_SNPs_36613 0 0 1 0 2 VANGL1 chr1:116226697 5'GT 116226697 Upstream 79bp 33677 chr8 144804024 144804024 1 + G A SKCM 144804025 + 144804005 144804045 41 TGACTGGAACCGGGGCGGTGGGGTGAGGGTGGCCAGCGTAC TGACTGGAACCGGGGCGGTAGGGTGAGGGTGGCCAGCGTAC < 41bp 0.586767301500348 0.788699721739169 NA NA prediction 0.403864840477643 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144804025 chr8:144804024 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_36614 0 0 1 0 1 MAPK15 chr8:144804050 5'GT 144804050 Upstream 27bp 33678 chr19 36103770 36103770 1 + G A COAD 36103771 + 36103751 36103791 41 GGGGTGCCCGTGGCGGCCCGGGCCCCGGAATCGACGCTGCG GGGGTGCCCGTGGCGGCCCAGGCCCCGGAATCGACGCTGCG < 41bp 0.577314827200547 0.779247129476079 NA NA prediction 0.403864604551064 Functional Gain - HAUS5 ENSG00000249115 CDS Human protein_coding chr19:36103771 chr19:36103770 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_36615 0 0 1 0 1 HAUS5 chr19:36103794 5'GT 36103794 Upstream 25bp 33679 chr11 68115394 68115394 1 + C T LUSC 68115395 + 68115375 68115415 41 TCAAGCTGGAGTCCACCATCGTGGTCAGCGGCCTGGAGGAT TCAAGCTGGAGTCCACCATTGTGGTCAGCGGCCTGGAGGAT < 41bp 0.500342487117009 0.702274522393645 NA NA prediction 0.403864070553272 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68115395 chr11:68115394 synonymous SNV . 0 20 hm7G_associated_SNPs_36616 0 0 1 0 1 LRP5 chr11:68115315 3'AG 68115315 Downstream 80bp 33680 chr7 29915470 29915470 1 + C T UCEC 29915471 + 29915451 29915491 41 CACAGACACCTCCAGCTTGCGAAGGGCAGATCCGAAAGGCC CACAGACACCTCCAGCTTGTGAAGGGCAGATCCGAAAGGCC < 41bp 0.488879905060857 0.70193190929635 NA NA prediction 0.403863818592699 Functional Gain - WIPF3 ENSG00000122574 CDS Human protein_coding chr7:29915471 chr7:29915470 stopgain 0.029 0 20 hm7G_associated_SNPs_36617 0 0 1 0 1 WIPF3 chr7:29915446 3'AG 29915446 Downstream 25bp 33681 chrX 10102571 10102571 1 + C T UCEC 10102572 + 10102552 10102592 41 CCGAGGGTCGCCTTTTGTTCGGAGTGGCACGATTGTCCGTT CCGAGGGTCGCCTTTTGTTTGGAGTGGCACGATTGTCCGTT < 41bp 0.554032070718251 0.755962210024886 NA NA prediction 0.403860278613271 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10102572 chrX:10102571 nonsynonymous SNV 0.803 4 20 hm7G_associated_SNPs_36619 0 0 0 0 1 WWC3 chrX:10102472 3'AG 10102472 Downstream 100bp 33682 chr11 63978229 63978229 1 + C T BLCA 63978230 + 63978210 63978250 41 GCACCGGCCCGTCATCCTTCGGTTGCCCAACCGCCGCGCAC GCACCGGCCCGTCATCCTTTGGTTGCCCAACCGCCGCGCAC < 41bp 0.486245213482743 0.701929822755062 NA NA prediction 0.403859645510124 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978230 chr11:63978229 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_36620 0 0 0 0 1 FERMT3 chr11:63978316 5'GT 63978316 Upstream 88bp 33683 chr7 141333740 141333740 1 + C T ACC 141333741 + 141333721 141333761 41 ATTTGCAATGACCGGCCTTCGATGGGGATCTTTCAGAGATG ATTTGCAATGACCGGCCTTTGATGGGGATCTTTCAGAGATG < 41bp 0.550913156161951 0.752842669769424 NA NA prediction 0.403859027214944 Functional Gain - AGK ENSG00000006530 CDS Human protein_coding chr7:141333741 chr7:141333740 stopgain 0.851 1 20 hm7G_associated_SNPs_36621 0 0 1 0 1 AGK chr7:141333780 5'GT 141333780 Upstream 41bp 33684 chr1 41494270 41494270 1 + G A SKCM 41494271 + 41494251 41494291 41 CCTACGTGTTTGCGAAACAGGTCAGCGTGGGGTCCAAGCTG CCTACGTGTTTGCGAAACAAGTCAGCGTGGGGTCCAAGCTG < 41bp 0.488784153965944 0.701929405238682 NA NA prediction 0.403858810477364 Functional Gain - SCMH1 ENSG00000010803 CDS Human protein_coding chr1:41494271 chr1:41494270 synonymous SNV . 0 20 hm7G_associated_SNPs_36622 0 0 1 0 1 SLFNL1-AS1 chr1:41494205 3'AG 41494205 Downstream 66bp 33685 chr1 161137900 161137900 1 + C T UCEC 161137901 + 161137881 161137921 41 TGTGCACAGTTTTGCCCAGCGCCGCCTTGGACCTGAGGTGA TGTGCACAGTTTTGCCCAGTGCCGCCTTGGACCTGAGGTGA < 41bp 0.501194448939258 0.703123213856488 NA NA prediction 0.403857529834459 Functional Gain - PPOX ENSG00000143224 CDS Human protein_coding chr1:161137901 chr1:161137900 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_36623 0 0 1 0 1 PPOX chr1:161137917 5'GT 161137917 Upstream 18bp 33686 chr1 40205859 40205859 1 + C T rs11809873 40205860 + 40205840 40205880 41 GACTGGCAGAGGAAGTGGACGACAAAGTTCTTCATGCTGCG GACTGGCAGAGGAAGTGGATGACAAAGTTCTTCATGCTGCG < 41bp 0.494106104391884 0.701925535962405 NA NA prediction 0.403851071924809 Functional Gain - PPIE ENSG00000084072 CDS Human protein_coding chr1:40205860 chr1:40205859 stopgain . 0 20 hm7G_associated_SNPs_36624 0 0 1 0 2 PPIE chr1:40205837 3'AG 40205837 Downstream 23bp 33687 chr1 40205859 40205859 1 + C T rs11809873 40205860 + 40205840 40205880 41 GACTGGCAGAGGAAGTGGACGACAAAGTTCTTCATGCTGCG GACTGGCAGAGGAAGTGGATGACAAAGTTCTTCATGCTGCG < 41bp 0.494106104391884 0.701925535962405 NA NA prediction 0.403851071924809 Functional Gain - PPIE ENSG00000084072 CDS Human protein_coding chr1:40205860 chr1:40205859 stopgain . 0 20 hm7G_associated_SNPs_36624 0 0 1 0 2 PPIE chr1:40205935 5'GT 40205935 Upstream 77bp 33688 chr3 46940168 46940168 1 + C T CHOL 46940169 + 46940149 46940189 41 CAGGCGGCTGCACTGCACGCGCAACTACATCCACATGCACC CAGGCGGCTGCACTGCACGTGCAACTACATCCACATGCACC < 41bp 0.527497025114626 0.729418634908143 NA NA prediction 0.403843219587035 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46940169 chr3:46940168 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_36628 0 0 0 0 1 PTH1R chr3:46940152 3'AG 46940152 Downstream 17bp 33689 chr16 56924230 56924230 1 + G A BRCA 56924231 + 56924211 56924251 41 GTGTGTGTCATGAGGATGCGGGAGGGACTCAACGTGTCCAA GTGTGTGTCATGAGGATGCAGGAGGGACTCAACGTGTCCAA < 41bp 0.490490030793475 0.701921270438441 NA NA prediction 0.403842540876883 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56924231 chr16:56924230 nonsynonymous SNV 0.814 2 20 hm7G_associated_SNPs_36629 0 0 0 0 2 SLC12A3 chr16:56924186 3'AG 56924186 Downstream 45bp 33690 chr16 56924230 56924230 1 + G A BRCA 56924231 + 56924211 56924251 41 GTGTGTGTCATGAGGATGCGGGAGGGACTCAACGTGTCCAA GTGTGTGTCATGAGGATGCAGGAGGGACTCAACGTGTCCAA < 41bp 0.490490030793475 0.701921270438441 NA NA prediction 0.403842540876883 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56924231 chr16:56924230 nonsynonymous SNV 0.814 2 20 hm7G_associated_SNPs_36629 0 0 0 0 2 SLC12A3 chr16:56924268 5'GT 56924268 Upstream 39bp 33691 chr5 38925441 38925441 1 + C T COAD 38925442 + 38925422 38925462 41 GGTGAAGGCCCCAGTGCTACGTTCACGAAGGTCACGACTCC GGTGAAGGCCCCAGTGCTATGTTCACGAAGGTCACGACTCC < 41bp 0.501275240159462 0.703195291476023 NA NA prediction 0.403840102633124 Functional Gain - OSMR ENSG00000145623 CDS Human protein_coding chr5:38925442 chr5:38925441 nonsynonymous SNV 0.027 2 20 hm7G_associated_SNPs_36631 0 0 1 0 1 OSMR chr5:38925473 5'GT 38925473 Upstream 33bp 33692 chr3 129233371 129233371 1 + C T SKCM 129233372 + 129233352 129233392 41 GCTGGGTACCCTGACCATCCGCGCCAAGCCCTTCCACGACA GCTGGGTACCCTGACCATCTGCGCCAAGCCCTTCCACGACA < 41bp 0.514589032180977 0.716509065402385 NA NA prediction 0.403840066442816 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129233372 chr3:129233371 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_36632 0 0 0 0 1 IFT122 chr3:129233397 5'GT 129233397 Upstream 27bp 33693 chr14 24647343 24647343 1 + G A UCEC 24647344 + 24647324 24647364 41 CGCCGCCGCCGTCGTCGCCGGTTACTGTTCTGGGACAAGGA CGCCGCCGCCGTCGTCGCCAGTTACTGTTCTGGGACAAGGA < 41bp 0.584931607438358 0.786851203738283 NA NA prediction 0.403839192599851 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647344 chr14:24647343 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_36633 0 0 0 0 2 REC8 chr14:24647297 3'AG 24647297 Downstream 47bp 33694 chr14 24647343 24647343 1 + G A UCEC 24647344 + 24647324 24647364 41 CGCCGCCGCCGTCGTCGCCGGTTACTGTTCTGGGACAAGGA CGCCGCCGCCGTCGTCGCCAGTTACTGTTCTGGGACAAGGA < 41bp 0.584931607438358 0.786851203738283 NA NA prediction 0.403839192599851 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24647344 chr14:24647343 nonsynonymous SNV 0.014 0 20 hm7G_associated_SNPs_36633 0 0 0 0 2 REC8 chr14:24647428 5'GT 24647428 Upstream 86bp 33695 chr1 100368346 100368346 1 + C T rs143076729 100368347 + 100368327 100368367 41 TAGATCGAAACATGAAGGACGAAGGTACAGAACTTTAACTA TAGATCGAAACATGAAGGATGAAGGTACAGAACTTTAACTA < 41bp 0.499970161559629 0.701919264855185 NA NA prediction 0.403838529710369 Functional Gain - AGL ENSG00000162688 CDS Human protein_coding chr1:100368347 chr1:100368346 synonymous SNV . 0 20 hm7G_associated_SNPs_36634 1 0 0 0 1 AGL chr1:100368350 5'GT 100368350 Upstream 5bp 33696 chr14 61201602 61201602 1 + C T HNSC 61201603 + 61201583 61201623 41 GGACGATCAGGGTTGCCCTCGGTGTAAGACCACCAAATATC GGACGATCAGGGTTGCCCTTGGTGTAAGACCACCAAATATC < 41bp 0.504356465480082 0.706275679376641 NA NA prediction 0.403838427793118 Functional Gain - MNAT1 ENSG00000020426 CDS Human protein_coding chr14:61201603 chr14:61201602 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_36635 0 0 1 0 1 MNAT1 chr14:61201669 5'GT 61201669 Upstream 68bp 33697 chr8 144642822 144642822 1 + G A TGCT 144642823 + 144642803 144642843 41 GCAGCAGCTGCGCAGCCGCGGGGACAACGTGTACGTGGTGA GCAGCAGCTGCGCAGCCGCAGGGACAACGTGTACGTGGTGA < 41bp 0.464557640204445 0.70191865501772 NA NA prediction 0.403837310035439 Functional Gain - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144642823 chr8:144642822 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_36636 0 0 1 0 1 GSDMD chr8:144642773 3'AG 144642773 Downstream 50bp 33698 chrX 18593569 18593569 1 + C T CESC 18593570 + 18593550 18593590 41 GTTGAAGGAAGCATTTCGTCGGAGGGGAAAGTTGTACTTGG GTTGAAGGAAGCATTTCGTTGGAGGGGAAAGTTGTACTTGG < 41bp 0.539072821517575 0.740990666276912 NA NA prediction 0.403835689518674 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18593570 chrX:18593569 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36638 0 0 0 0 2 CDKL5 chrX:18593474 3'AG 18593474 Downstream 96bp 33699 chrX 18593569 18593569 1 + C T CESC 18593570 + 18593550 18593590 41 GTTGAAGGAAGCATTTCGTCGGAGGGGAAAGTTGTACTTGG GTTGAAGGAAGCATTTCGTTGGAGGGGAAAGTTGTACTTGG < 41bp 0.539072821517575 0.740990666276912 NA NA prediction 0.403835689518674 Functional Gain - CDKL5 ENSG00000008086 CDS Human protein_coding chrX:18593570 chrX:18593569 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36638 0 0 0 0 2 CDKL5 chrX:18593610 5'GT 18593610 Upstream 42bp 33700 chr4 184629569 184629569 1 + C T UCEC 184629570 + 184629550 184629590 41 TATGATGCAGATTCGATTACGTATCCTCCCTGGCACGGAGC TATGATGCAGATTCGATTATGTATCCTCCCTGGCACGGAGC < 41bp 0.508551597727553 0.71046880242057 NA NA prediction 0.403834409386035 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184629570 chr4:184629569 nonsynonymous SNV 0.665 3 20 hm7G_associated_SNPs_36639 0 0 0 0 2 TRAPPC11 chr4:184629560 3'AG 184629560 Downstream 10bp 33701 chr4 184629569 184629569 1 + C T UCEC 184629570 + 184629550 184629590 41 TATGATGCAGATTCGATTACGTATCCTCCCTGGCACGGAGC TATGATGCAGATTCGATTATGTATCCTCCCTGGCACGGAGC < 41bp 0.508551597727553 0.71046880242057 NA NA prediction 0.403834409386035 Functional Gain - TRAPPC11 ENSG00000168538 CDS Human protein_coding chr4:184629570 chr4:184629569 nonsynonymous SNV 0.665 3 20 hm7G_associated_SNPs_36639 0 0 0 0 2 TRAPPC11 chr4:184629569 5'GT 184629569 Upstream 1bp 33702 chr3 128753024 128753024 1 + C T rs187600174 128753025 + 128753005 128753045 41 AGGTGTGATGACCAGACGGCGGAGAAGCTCATGACTTACTT AGGTGTGATGACCAGACGGTGGAGAAGCTCATGACTTACTT < 41bp 0.537128426223885 0.739045389773187 NA NA prediction 0.403833927098604 Functional Gain - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128753025 chr3:128753024 nonsynonymous SNV 0.575 0 20 hm7G_associated_SNPs_36640 0 0 0 0 1 EFCC1 chr3:128753007 3'AG 128753007 Downstream 18bp 33703 chr10 93604783 93604783 1 + G T LUAD 93604784 + 93604764 93604804 41 ACATAATGCAGCATCTTACGGGGTAAGTTCTTCCGTGTTAC ACATAATGCAGCATCTTACTGGGTAAGTTCTTCCGTGTTAC < 41bp 0.372431858569735 0.701913668150561 NA NA prediction 0.403827336301123 Functional Gain - TNKS2 ENSG00000107854 CDS Human protein_coding chr10:93604784 chr10:93604783 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_36641 0 0 1 0 1 TNKS2 chr10:93604785 5'GT 93604785 Upstream 3bp 33704 chr1 156552955 156552955 1 + G A SKCM 156552956 + 156552936 156552976 41 ATGCCCTGCAGGCTGCCCGGGACTCTGGTAAGCGTGAGAGG ATGCCCTGCAGGCTGCCCGAGACTCTGGTAAGCGTGAGAGG < 41bp 0.536449411756132 0.738362903368701 NA NA prediction 0.403826983225138 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156552956 chr1:156552955 synonymous SNV . 0 20 hm7G_associated_SNPs_36642 0 0 0 0 1 TTC24 chr1:156552962 5'GT 156552962 Upstream 8bp 33705 chr22 44585031 44585031 1 + C T SKCM 44585032 + 44585012 44585052 41 AGCTGGAAGCAGAGGACATCGCCCTGACAGCCACAAGCCAG AGCTGGAAGCAGAGGACATTGCCCTGACAGCCACAAGCCAG < 41bp 0.549457506668984 0.751368951154815 NA NA prediction 0.403822888971662 Functional Gain - PARVG ENSG00000138964 CDS Human protein_coding chr22:44585032 chr22:44585031 synonymous SNV . 0 20 hm7G_associated_SNPs_36643 0 0 0 0 1 PARVG chr22:44584994 3'AG 44584994 Downstream 38bp 33706 chr3 185155325 185155325 1 + C T UCEC 185155326 + 185155306 185155346 41 TTCTTGGGCAAGTTCCGGGCGGAAGAGGTGGCCATCAAGAA TTCTTGGGCAAGTTCCGGGTGGAAGAGGTGGCCATCAAGAA < 41bp 0.55526665295688 0.757177643963874 NA NA prediction 0.403821982013987 Functional Gain - MAP3K13 ENSG00000073803 CDS Human protein_coding chr3:185155326 chr3:185155325 nonsynonymous SNV 0.635 3 20 hm7G_associated_SNPs_36644 0 0 1 0 2 MAP3K13 chr3:185155235 3'AG 185155235 Downstream 91bp 33707 chr3 185155325 185155325 1 + C T UCEC 185155326 + 185155306 185155346 41 TTCTTGGGCAAGTTCCGGGCGGAAGAGGTGGCCATCAAGAA TTCTTGGGCAAGTTCCGGGTGGAAGAGGTGGCCATCAAGAA < 41bp 0.55526665295688 0.757177643963874 NA NA prediction 0.403821982013987 Functional Gain - MAP3K13 ENSG00000073803 CDS Human protein_coding chr3:185155326 chr3:185155325 nonsynonymous SNV 0.635 3 20 hm7G_associated_SNPs_36644 0 0 1 0 2 MAP3K13 chr3:185155418 5'GT 185155418 Upstream 94bp 33708 chr16 3168964 3168964 1 + G A ESCA 3168965 + 3168945 3168985 41 ACGGCAAGGGTGAGGCCTCGGGCTCCAGCCGGCAGGCAGGA ACGGCAAGGGTGAGGCCTCAGGCTCCAGCCGGCAGGCAGGA < 41bp 0.464429586033542 0.70190947707288 NA NA prediction 0.403818954145759 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3168965 chr16:3168964 synonymous SNV . 0 20 hm7G_associated_SNPs_36645 0 0 1 0 2 ZNF205 chr16:3168906 3'AG 3168906 Downstream 59bp 33709 chr16 3168964 3168964 1 + G A ESCA 3168965 + 3168945 3168985 41 ACGGCAAGGGTGAGGCCTCGGGCTCCAGCCGGCAGGCAGGA ACGGCAAGGGTGAGGCCTCAGGCTCCAGCCGGCAGGCAGGA < 41bp 0.464429586033542 0.70190947707288 NA NA prediction 0.403818954145759 Functional Gain - ZNF205 ENSG00000122386 CDS Human protein_coding chr16:3168965 chr16:3168964 synonymous SNV . 0 20 hm7G_associated_SNPs_36645 0 0 1 0 2 ZNF205 chr16:3169016 5'GT 3169016 Upstream 53bp 33710 chr1 220936352 220936352 1 + G T LUAD 220936353 + 220936333 220936373 41 ATGAAAATGGAGAATTTCAGGCCAAATATTGTGGTGACCGG ATGAAAATGGAGAATTTCATGCCAAATATTGTGGTGACCGG < 41bp 0.707399339034562 0.909306222542645 NA NA prediction 0.403813767016165 Functional Gain - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220936353 chr1:220936352 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36647 0 0 0 0 1 MARC2 chr1:220936392 5'GT 220936392 Upstream 41bp 33711 chr2 191334518 191334518 1 + C T LUSC 191334519 + 191334499 191334539 41 CCTGGCCTGCAATACGGCTCGCTATATTTATATTTCCTACC CCTGGCCTGCAATACGGCTTGCTATATTTATATTTCCTACC < 41bp 0.540902784916588 0.742809640387813 NA NA prediction 0.40381371094245 Functional Gain - MFSD6 ENSG00000151690 CDS Human protein_coding chr2:191334519 chr2:191334518 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_36648 0 0 0 0 1 MFSD6 chr2:191334581 5'GT 191334581 Upstream 64bp 33712 chr2 114356009 114356009 1 + G A UCEC 114356010 + 114355990 114356030 41 AAGGTGGGCACTTGATGTCGGATCTCTTCAACAAGCTGGTC AAGGTGGGCACTTGATGTCAGATCTCTTCAACAAGCTGGTC < 41bp 0.536817894181288 0.738723632135261 NA NA prediction 0.403811475907947 Functional Gain - WASH2P ENSG00000146556 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:114356010 chr2:114356009 . . 0 20 hm7G_associated_SNPs_36649 0 0 1 1 1 WASH2P chr2:114355975 3'AG 114355975 Downstream 35bp 33713 chr17 72324566 72324566 1 + G A LUAD 72324567 + 72324547 72324587 41 TTGGTTTTCCCTCCCAGGTGGCGCTTCGGGTCCGGCCCATC TTGGTTTTCCCTCCCAGGTAGCGCTTCGGGTCCGGCCCATC < 41bp 0.470091046255916 0.701905447607491 NA NA prediction 0.403810895214983 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72324567 chr17:72324566 synonymous SNV . 0 20 hm7G_associated_SNPs_36650 0 0 0 0 2 KIF19 chr17:72324564 3'AG 72324564 Downstream 3bp 33714 chr17 72324566 72324566 1 + G A LUAD 72324567 + 72324547 72324587 41 TTGGTTTTCCCTCCCAGGTGGCGCTTCGGGTCCGGCCCATC TTGGTTTTCCCTCCCAGGTAGCGCTTCGGGTCCGGCCCATC < 41bp 0.470091046255916 0.701905447607491 NA NA prediction 0.403810895214983 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72324567 chr17:72324566 synonymous SNV . 0 20 hm7G_associated_SNPs_36650 0 0 0 0 2 KIF19 chr17:72324644 5'GT 72324644 Upstream 79bp 33715 chr7 106829793 106829793 1 + C T GBM 106829794 + 106829774 106829814 41 AAGAAAGTGTATCATTTGGCGAGTCTGTACTGAAGTTGACT AAGAAAGTGTATCATTTGGTGAGTCTGTACTGAAGTTGACT < 41bp 0.52780405290814 0.729707571379417 NA NA prediction 0.403807036942554 Functional Gain - HBP1 ENSG00000105856 CDS Human protein_coding chr7:106829794 chr7:106829793 synonymous SNV . 0 20 hm7G_associated_SNPs_36651 0 0 1 0 1 HBP1 chr7:106829737 3'AG 106829737 Downstream 57bp 33716 chr1 160385899 160385899 1 + G A STAD 160385900 + 160385880 160385920 41 AGTCGAGATGGGGGCCGAGGGGACAAGTCGGTGACAATCCA AGTCGAGATGGGGGCCGAGAGGACAAGTCGGTGACAATCCA < 41bp 0.558866129332465 0.760767461463966 NA NA prediction 0.403802664263003 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385900 chr1:160385899 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_36653 0 0 0 0 2 VANGL2 chr1:160385852 3'AG 160385852 Downstream 48bp 33717 chr1 160385899 160385899 1 + G A STAD 160385900 + 160385880 160385920 41 AGTCGAGATGGGGGCCGAGGGGACAAGTCGGTGACAATCCA AGTCGAGATGGGGGCCGAGAGGACAAGTCGGTGACAATCCA < 41bp 0.558866129332465 0.760767461463966 NA NA prediction 0.403802664263003 Functional Gain - VANGL2 ENSG00000162738 CDS Human protein_coding chr1:160385900 chr1:160385899 nonsynonymous SNV 0.978 1 20 hm7G_associated_SNPs_36653 0 0 0 0 2 VANGL2 chr1:160385972 5'GT 160385972 Upstream 74bp 33718 chr19 17303646 17303646 1 + G A COAD 17303647 + 17303627 17303667 41 CTGCTGCAGAGCTGGTTCCGGATGGTGCTGGAGCGTCGGCA CTGCTGCAGAGCTGGTTCCAGATGGTGCTGGAGCGTCGGCA < 41bp 0.517232211402835 0.719132378401017 NA NA prediction 0.403800333996363 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17303647 chr19:17303646 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_36656 0 0 1 0 1 MYO9B chr19:17303555 3'AG 17303555 Downstream 92bp 33719 chr4 113348782 113348782 1 + C T LUAD 113348783 + 113348763 113348803 41 TTGTTTCCATGAGCAAGAACGATTATGAAAAGTTTAAAAAC TTGTTTCCATGAGCAAGAATGATTATGAAAAGTTTAAAAAC < 41bp 0.504441185997989 0.70634117262675 NA NA prediction 0.403799973257522 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113348783 chr4:113348782 synonymous SNV . 0 20 hm7G_associated_SNPs_36657 0 0 0 0 2 ALPK1 chr4:113348726 3'AG 113348726 Downstream 57bp 33720 chr4 113348782 113348782 1 + C T LUAD 113348783 + 113348763 113348803 41 TTGTTTCCATGAGCAAGAACGATTATGAAAAGTTTAAAAAC TTGTTTCCATGAGCAAGAATGATTATGAAAAGTTTAAAAAC < 41bp 0.504441185997989 0.70634117262675 NA NA prediction 0.403799973257522 Functional Gain - ALPK1 ENSG00000073331 CDS Human protein_coding chr4:113348783 chr4:113348782 synonymous SNV . 0 20 hm7G_associated_SNPs_36657 0 0 0 0 2 ALPK1 chr4:113348821 5'GT 113348821 Upstream 40bp 33721 chr9 139252516 139252516 1 + G T SKCM 139252517 + 139252497 139252537 41 CACCTGACGTACTGCCCCGGGGCCCTACCATGCCGGACGAG CACCTGACGTACTGCCCCGTGGCCCTACCATGCCGGACGAG < 41bp 0.355762732087701 0.701899335553816 NA NA prediction 0.403798671107632 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139252517 chr9:139252516 synonymous SNV . 0 20 hm7G_associated_SNPs_36658 0 0 0 0 1 GPSM1 chr9:139252466 3'AG 139252466 Downstream 51bp 33722 chr9 139250965 139250965 1 + C T COAD 139250966 + 139250946 139250986 41 CACGGCGAGCCCCAGGAGCCGGGGGACGACTTCTTCAACAT CACGGCGAGCCCCAGGAGCTGGGGGACGACTTCTTCAACAT < 41bp 0.512147263050059 0.714046515877426 NA NA prediction 0.403798505654734 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139250966 chr9:139250965 nonsynonymous SNV 0.627 5 20 hm7G_associated_SNPs_36659 0 0 0 0 1 GPSM1 chr9:139251002 5'GT 139251002 Upstream 38bp 33723 chr5 14369542 14369542 1 + C T UCEC 14369543 + 14369523 14369563 41 GAGAAGAAGACTGGTGTGGCGGGGCGGATAAGCTGGGCCCA GAGAAGAAGACTGGTGTGGTGGGGCGGATAAGCTGGGCCCA < 41bp 0.515201670396203 0.71709987562809 NA NA prediction 0.403796410463773 Functional Gain - TRIO ENSG00000038382 CDS Human protein_coding chr5:14369543 chr5:14369542 synonymous SNV . 0 20 hm7G_associated_SNPs_36662 0 0 1 0 2 TRIO chr5:14369483 3'AG 14369483 Downstream 60bp 33724 chr5 14369542 14369542 1 + C T UCEC 14369543 + 14369523 14369563 41 GAGAAGAAGACTGGTGTGGCGGGGCGGATAAGCTGGGCCCA GAGAAGAAGACTGGTGTGGTGGGGCGGATAAGCTGGGCCCA < 41bp 0.515201670396203 0.71709987562809 NA NA prediction 0.403796410463773 Functional Gain - TRIO ENSG00000038382 CDS Human protein_coding chr5:14369543 chr5:14369542 synonymous SNV . 0 20 hm7G_associated_SNPs_36662 0 0 1 0 2 TRIO chr5:14369632 5'GT 14369632 Upstream 91bp 33725 chr22 18604278 18604278 1 + G A STAD 18604279 + 18604259 18604299 41 CAGTCCACGTGGGCCAAGCGGGAGTTCAGATTGGCAATGCC CAGTCCACGTGGGCCAAGCAGGAGTTCAGATTGGCAATGCC < 41bp 0.561645586415005 0.763543751079454 NA NA prediction 0.403796329328896 Functional Gain - TUBA8 ENSG00000183785;ENSG00000215193 CDS Human other chr22:18604279 chr22:18604278 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_36663 0 0 0 0 1 TUBA8 chr22:18604246 3'AG 18604246 Downstream 33bp 33726 chr14 100992272 100992272 1 + C T UCEC 100992273 + 100992253 100992293 41 TGTTCCTCCGGGAAGGCTCCGAGTTCCTGAGCAGCACAGAC TGTTCCTCCGGGAAGGCTCTGAGTTCCTGAGCAGCACAGAC < 41bp 0.552547148858745 0.754440836230678 NA NA prediction 0.403787374743865 Functional Gain - WDR25 ENSG00000176473 CDS Human protein_coding chr14:100992273 chr14:100992272 synonymous SNV . 0 20 hm7G_associated_SNPs_36664 0 0 0 1 1 WDR25 chr14:100992207 3'AG 100992207 Downstream 66bp 33727 chr19 41628759 41628759 1 + G A SKCM 41628760 + 41628740 41628780 41 CACTGAGCCACTTCCACATGGATACCCTGCTGATGACCACA CACTGAGCCACTTCCACATAGATACCCTGCTGATGACCACA < 41bp 0.46910650590995 0.701892660563707 NA NA prediction 0.403785321127413 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41628760 chr19:41628759 nonsynonymous SNV 0.947 0 20 hm7G_associated_SNPs_36665 0 0 0 1 2 CYP2F1 chr19:41628727 3'AG 41628727 Downstream 33bp 33728 chr19 41628759 41628759 1 + G A SKCM 41628760 + 41628740 41628780 41 CACTGAGCCACTTCCACATGGATACCCTGCTGATGACCACA CACTGAGCCACTTCCACATAGATACCCTGCTGATGACCACA < 41bp 0.46910650590995 0.701892660563707 NA NA prediction 0.403785321127413 Functional Gain - CYP2F1 ENSG00000197446 CDS Human protein_coding chr19:41628760 chr19:41628759 nonsynonymous SNV 0.947 0 20 hm7G_associated_SNPs_36665 0 0 0 1 2 CYP2F1 chr19:41628810 5'GT 41628810 Upstream 52bp 33729 chr18 48255562 48255562 1 + C T UCEC 48255563 + 48255543 48255583 41 GTCGTCGGACCTGGAGTGGCGGCCTGACCGGTGCCAGGACG GTCGTCGGACCTGGAGTGGTGGCCTGACCGGTGCCAGGACG < 41bp 0.493136608590949 0.701891107503668 NA NA prediction 0.403782215007336 Functional Gain - MAPK4 ENSG00000141639 CDS Human protein_coding chr18:48255563 chr18:48255562 nonsynonymous SNV 0.759 3 20 hm7G_associated_SNPs_36668 0 0 0 0 1 MAPK4 chr18:48255528 3'AG 48255528 Downstream 35bp 33730 chr20 31017142 31017142 1 + C T UCEC 31017143 + 31017123 31017163 41 TTCTCTCTTGGAACGCAGGCGAACAAACAAAAGAAAAAGAC TTCTCTCTTGGAACGCAGGTGAACAAACAAAAGAAAAAGAC < 41bp 0.560868195715114 0.762757146323166 NA NA prediction 0.403777901216103 Functional Gain - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31017143 chr20:31017142 nonsynonymous SNV 0.594 1 20 hm7G_associated_SNPs_36669 0 0 1 0 2 ASXL1 chr20:31017141 3'AG 31017141 Downstream 2bp 33731 chr20 31017142 31017142 1 + C T UCEC 31017143 + 31017123 31017163 41 TTCTCTCTTGGAACGCAGGCGAACAAACAAAAGAAAAAGAC TTCTCTCTTGGAACGCAGGTGAACAAACAAAAGAAAAAGAC < 41bp 0.560868195715114 0.762757146323166 NA NA prediction 0.403777901216103 Functional Gain - ASXL1 ENSG00000171456 CDS Human protein_coding chr20:31017143 chr20:31017142 nonsynonymous SNV 0.594 1 20 hm7G_associated_SNPs_36669 0 0 1 0 2 ASXL1 chr20:31017234 5'GT 31017234 Upstream 93bp 33732 chr3 14744670 14744670 1 + C T COAD 14744671 + 14744651 14744691 41 ACAGAAGATGTCAGCATGCCGCCCCTGCATCGAGGAGTGGG ACAGAAGATGTCAGCATGCTGCCCCTGCATCGAGGAGTGGG < 41bp 0.536444667962238 0.738332493814752 NA NA prediction 0.403775651705028 Functional Gain - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14744671 chr3:14744670 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36671 0 0 0 0 2 C3orf20 chr3:14744637 3'AG 14744637 Downstream 34bp 33733 chr3 14744670 14744670 1 + C T COAD 14744671 + 14744651 14744691 41 ACAGAAGATGTCAGCATGCCGCCCCTGCATCGAGGAGTGGG ACAGAAGATGTCAGCATGCTGCCCCTGCATCGAGGAGTGGG < 41bp 0.536444667962238 0.738332493814752 NA NA prediction 0.403775651705028 Functional Gain - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14744671 chr3:14744670 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36671 0 0 0 0 2 C3orf20 chr3:14744769 5'GT 14744769 Upstream 100bp 33734 chr6 96986605 96986605 1 + C T LIHC 96986606 + 96986586 96986626 41 CCTCAACTGTAGTCTTTAGCGACACTGTTGTAGTCAGTGAA CCTCAACTGTAGTCTTTAGTGACACTGTTGTAGTCAGTGAA < 41bp 0.538924572706748 0.740809650274603 NA NA prediction 0.40377015513571 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96986606 chr6:96986605 synonymous SNV . 0 20 hm7G_associated_SNPs_36673 0 0 1 0 2 UFL1 chr6:96986507 3'AG 96986507 Downstream 99bp 33735 chr6 96986605 96986605 1 + C T LIHC 96986606 + 96986586 96986626 41 CCTCAACTGTAGTCTTTAGCGACACTGTTGTAGTCAGTGAA CCTCAACTGTAGTCTTTAGTGACACTGTTGTAGTCAGTGAA < 41bp 0.538924572706748 0.740809650274603 NA NA prediction 0.40377015513571 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96986606 chr6:96986605 synonymous SNV . 0 20 hm7G_associated_SNPs_36673 0 0 1 0 2 UFL1 chr6:96986686 5'GT 96986686 Upstream 82bp 33736 chr7 44687259 44687259 1 + C T PAAD 44687260 + 44687240 44687280 41 CGTTGGCCACTCATAGATACGAGGGCACCATGTAGCACAGC CGTTGGCCACTCATAGATATGAGGGCACCATGTAGCACAGC < 41bp 0.543028287131948 0.744912560088897 NA NA prediction 0.403768545913898 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44687260 chr7:44687259 stopgain 1.000 1 20 hm7G_associated_SNPs_36675 0 0 1 0 2 OGDH chr7:44687256 3'AG 44687256 Downstream 4bp 33737 chr7 44687259 44687259 1 + C T PAAD 44687260 + 44687240 44687280 41 CGTTGGCCACTCATAGATACGAGGGCACCATGTAGCACAGC CGTTGGCCACTCATAGATATGAGGGCACCATGTAGCACAGC < 41bp 0.543028287131948 0.744912560088897 NA NA prediction 0.403768545913898 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44687260 chr7:44687259 stopgain 1.000 1 20 hm7G_associated_SNPs_36675 0 0 1 0 2 OGDH chr7:44687358 5'GT 44687358 Upstream 100bp 33738 chr21 47910620 47910620 1 + C T UCEC 47910621 + 47910601 47910641 41 CACCGCCTCGAGGGATGAGCGCTTCCGGTCAGGTAGGGTCA CACCGCCTCGAGGGATGAGTGCTTCCGGTCAGGTAGGGTCA < 41bp 0.505170697645732 0.707054706757705 NA NA prediction 0.403768018223945 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47910621 chr21:47910620 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_36676 0 0 1 0 1 DIP2A chr21:47910632 5'GT 47910632 Upstream 13bp 33739 chr10 70967668 70967668 1 + C T UCEC 70967669 + 70967649 70967689 41 TGGATCTTGAAGCTGTCCACGATGTCTTGGATCTTTACTTG TGGATCTTGAAGCTGTCCATGATGTCTTGGATCTTTACTTG < 41bp 0.534367244827803 0.736250622869477 NA NA prediction 0.403766756083347 Functional Gain - SUPV3L1 ENSG00000156502 CDS Human protein_coding chr10:70967669 chr10:70967668 synonymous SNV . 0 20 hm7G_associated_SNPs_36678 0 0 1 0 1 SUPV3L1 chr10:70967697 5'GT 70967697 Upstream 30bp 33740 chr22 22040818 22040818 1 + C T BLCA 22040819 + 22040799 22040839 41 GCTTCCTTCACCTCCACCGCGATGGTCCCGGAGACCACACA GCTTCCTTCACCTCCACCGTGATGGTCCCGGAGACCACACA < 41bp 0.560554752661469 0.762437782314824 NA NA prediction 0.403766059306711 Functional Gain - PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040819 chr22:22040818 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_36679 0 0 1 0 2 PPIL2 chr22:22040772 3'AG 22040772 Downstream 47bp 33741 chr22 22040818 22040818 1 + C T BLCA 22040819 + 22040799 22040839 41 GCTTCCTTCACCTCCACCGCGATGGTCCCGGAGACCACACA GCTTCCTTCACCTCCACCGTGATGGTCCCGGAGACCACACA < 41bp 0.560554752661469 0.762437782314824 NA NA prediction 0.403766059306711 Functional Gain - PPIL2 ENSG00000100023 CDS Human protein_coding chr22:22040819 chr22:22040818 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_36679 0 0 1 0 2 PPIL2 chr22:22040847 5'GT 22040847 Upstream 30bp 33742 chr17 33588041 33588041 1 + C T READ 33588042 + 33588022 33588062 41 TTGAGTTTGTCATCTGCCACGCCCCGCAGCAAGCCTGTGTG TTGAGTTTGTCATCTGCCATGCCCCGCAGCAAGCCTGTGTG < 41bp 0.50629353506713 0.708175743744303 NA NA prediction 0.403764417354346 Functional Gain - SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33588042 chr17:33588041 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_36681 0 0 0 0 2 SLFN5 chr17:33587990 3'AG 33587990 Downstream 52bp 33743 chr17 33588041 33588041 1 + C T READ 33588042 + 33588022 33588062 41 TTGAGTTTGTCATCTGCCACGCCCCGCAGCAAGCCTGTGTG TTGAGTTTGTCATCTGCCATGCCCCGCAGCAAGCCTGTGTG < 41bp 0.50629353506713 0.708175743744303 NA NA prediction 0.403764417354346 Functional Gain - SLFN5 ENSG00000166750 CDS Human protein_coding chr17:33588042 chr17:33588041 nonsynonymous SNV 0.013 1 20 hm7G_associated_SNPs_36681 0 0 0 0 2 SLFN5 chr17:33588115 5'GT 33588115 Upstream 75bp 33744 chr19 3151744 3151744 1 + C T BLCA 3151745 + 3151725 3151765 41 GCATCACCGAGGAGGGCTACGTCCCCACAGCTCAGGACGTG GCATCACCGAGGAGGGCTATGTCCCCACAGCTCAGGACGTG < 41bp 0.505867724473182 0.707745457137101 NA NA prediction 0.403755465327836 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151745 chr19:3151744 synonymous SNV . 0 20 hm7G_associated_SNPs_36684 0 0 0 0 2 GNA15 chr19:3151705 3'AG 3151705 Downstream 40bp 33745 chr19 3151744 3151744 1 + C T BLCA 3151745 + 3151725 3151765 41 GCATCACCGAGGAGGGCTACGTCCCCACAGCTCAGGACGTG GCATCACCGAGGAGGGCTATGTCCCCACAGCTCAGGACGTG < 41bp 0.505867724473182 0.707745457137101 NA NA prediction 0.403755465327836 Functional Gain - GNA15 ENSG00000060558 CDS Human protein_coding chr19:3151745 chr19:3151744 synonymous SNV . 0 20 hm7G_associated_SNPs_36684 0 0 0 0 2 GNA15 chr19:3151833 5'GT 3151833 Upstream 90bp 33746 chr12 113867086 113867086 1 + G A GBM 113867087 + 113867067 113867107 41 TGCAGGGGGAGGGGGCCGAGGTTCAGCTGACTGGAAAGGTA TGCAGGGGGAGGGGGCCGAAGTTCAGCTGACTGGAAAGGTA < 41bp 0.577955549223855 0.779830235641764 NA NA prediction 0.403749372835819 Functional Gain - SDSL ENSG00000139410 CDS Human protein_coding chr12:113867087 chr12:113867086 synonymous SNV . 0 20 hm7G_associated_SNPs_36685 0 0 1 0 1 SDSL chr12:113867104 5'GT 113867104 Upstream 19bp 33747 chr15 45554261 45554261 1 + C T LGG 45554262 + 45554242 45554282 41 GAAGTTTCTGCAAAACACACGCCAGCTTGTTCAAGAAGATC GAAGTTTCTGCAAAACACATGCCAGCTTGTTCAAGAAGATC < 41bp 0.527493000816303 0.729366583092862 NA NA prediction 0.403747164553118 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45554262 chr15:45554261 synonymous SNV . 0 20 hm7G_associated_SNPs_36687 0 0 0 0 2 SLC28A2 chr15:45554213 3'AG 45554213 Downstream 49bp 33748 chr15 45554261 45554261 1 + C T LGG 45554262 + 45554242 45554282 41 GAAGTTTCTGCAAAACACACGCCAGCTTGTTCAAGAAGATC GAAGTTTCTGCAAAACACATGCCAGCTTGTTCAAGAAGATC < 41bp 0.527493000816303 0.729366583092862 NA NA prediction 0.403747164553118 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45554262 chr15:45554261 synonymous SNV . 0 20 hm7G_associated_SNPs_36687 0 0 0 0 2 SLC28A2 chr15:45554304 5'GT 45554304 Upstream 44bp 33749 chrX 53454997 53454997 1 + G T SKCM 53454998 + 53454978 53455018 41 GTGGGAGACCGAAAGCGTCGGGAAGCAGCAGAAAGAAGCAA GTGGGAGACCGAAAGCGTCTGGAAGCAGCAGAAAGAAGCAA < 41bp 0.7132513675508 0.915124350998894 NA NA prediction 0.403745966896188 Functional Gain - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53454998 chrX:53454997 nonsynonymous SNV 0.654 1 20 hm7G_associated_SNPs_36688 0 0 0 0 2 RIBC1 chrX:53454951 3'AG 53454951 Downstream 47bp 33750 chrX 53454997 53454997 1 + G T SKCM 53454998 + 53454978 53455018 41 GTGGGAGACCGAAAGCGTCGGGAAGCAGCAGAAAGAAGCAA GTGGGAGACCGAAAGCGTCTGGAAGCAGCAGAAAGAAGCAA < 41bp 0.7132513675508 0.915124350998894 NA NA prediction 0.403745966896188 Functional Gain - RIBC1 ENSG00000158423 CDS Human protein_coding chrX:53454998 chrX:53454997 nonsynonymous SNV 0.654 1 20 hm7G_associated_SNPs_36688 0 0 0 0 2 RIBC1 chrX:53455032 5'GT 53455032 Upstream 36bp 33751 chr3 38044745 38044745 1 + G T LUSC 38044746 + 38044726 38044766 41 AAACGGTGCTGGAGGGTCAGGAGCCTCCCCACTTCTGGGAG AAACGGTGCTGGAGGGTCATGAGCCTCCCCACTTCTGGGAG < 41bp 0.347346718486323 0.701872060376937 NA NA prediction 0.403744120753873 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38044746 chr3:38044745 nonsynonymous SNV 0.196 2 20 hm7G_associated_SNPs_36689 0 0 1 0 2 VILL chr3:38044659 3'AG 38044659 Downstream 87bp 33752 chr3 38044745 38044745 1 + G T LUSC 38044746 + 38044726 38044766 41 AAACGGTGCTGGAGGGTCAGGAGCCTCCCCACTTCTGGGAG AAACGGTGCTGGAGGGTCATGAGCCTCCCCACTTCTGGGAG < 41bp 0.347346718486323 0.701872060376937 NA NA prediction 0.403744120753873 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38044746 chr3:38044745 nonsynonymous SNV 0.196 2 20 hm7G_associated_SNPs_36689 0 0 1 0 2 VILL chr3:38044804 5'GT 38044804 Upstream 60bp 33753 chr12 54967000 54967000 1 + G A rs115481291 54967001 + 54966981 54967021 41 TCCATGATTATGAGCACACGGGCACTACCAACAGCTTCCAC TCCATGATTATGAGCACACAGGCACTACCAACAGCTTCCAC < 41bp 0.546565323669804 0.748436958475 NA NA prediction 0.403743269610393 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54967001 chr12:54967000 synonymous SNV . 0 20 hm7G_associated_SNPs_36691 0 0 0 0 2 PDE1B chr12:54966932 3'AG 54966932 Downstream 69bp 33754 chr12 54967000 54967000 1 + G A rs115481291 54967001 + 54966981 54967021 41 TCCATGATTATGAGCACACGGGCACTACCAACAGCTTCCAC TCCATGATTATGAGCACACAGGCACTACCAACAGCTTCCAC < 41bp 0.546565323669804 0.748436958475 NA NA prediction 0.403743269610393 Functional Gain - PDE1B ENSG00000123360 CDS Human protein_coding chr12:54967001 chr12:54967000 synonymous SNV . 0 20 hm7G_associated_SNPs_36691 0 0 0 0 2 PDE1B chr12:54967032 5'GT 54967032 Upstream 33bp 33755 chr6 159172984 159172984 1 + C T rs376737175 159172985 + 159172965 159173005 41 TGAAGACCTACCTGTTGCCCGACAGATCCTCCCAGGGAAAG TGAAGACCTACCTGTTGCCTGACAGATCCTCCCAGGGAAAG < 41bp 0.486823348643327 0.701871293972182 NA NA prediction 0.403742587944364 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159172985 chr6:159172984 synonymous SNV . 0 20 hm7G_associated_SNPs_36692 0 0 0 0 2 SYTL3 chr6:159172960 3'AG 159172960 Downstream 25bp 33756 chr6 159172984 159172984 1 + C T rs376737175 159172985 + 159172965 159173005 41 TGAAGACCTACCTGTTGCCCGACAGATCCTCCCAGGGAAAG TGAAGACCTACCTGTTGCCTGACAGATCCTCCCAGGGAAAG < 41bp 0.486823348643327 0.701871293972182 NA NA prediction 0.403742587944364 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159172985 chr6:159172984 synonymous SNV . 0 20 hm7G_associated_SNPs_36692 0 0 0 0 2 SYTL3 chr6:159173062 5'GT 159173062 Upstream 79bp 33757 chr11 63174092 63174092 1 + G A SKCM 63174093 + 63174073 63174113 41 CCAACTGTGTTGCACCTTGGGCACTGAAATACATGAACCGT CCAACTGTGTTGCACCTTGAGCACTGAAATACATGAACCGT < 41bp 0.528462791987791 0.730333999025968 NA NA prediction 0.403742414076354 Functional Gain - SLC22A9 ENSG00000149742 CDS Human protein_coding chr11:63174093 chr11:63174092 stopgain 0.000 0 20 hm7G_associated_SNPs_36694 0 0 0 0 1 SLC22A9 chr11:63174183 5'GT 63174183 Upstream 92bp 33758 chr16 81971411 81971411 1 + C T SKCM 81971412 + 81971392 81971432 41 TTTTCTCTCAATGGGCGCACGGGCTACGTTCTGCAGCCTGA TTTTCTCTCAATGGGCGCATGGGCTACGTTCTGCAGCCTGA < 41bp 0.554335983955102 0.756205647956394 NA NA prediction 0.403739328002585 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81971412 chr16:81971411 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_36697 0 0 0 0 2 PLCG2 chr16:81971363 3'AG 81971363 Downstream 49bp 33759 chr16 81971411 81971411 1 + C T SKCM 81971412 + 81971392 81971432 41 TTTTCTCTCAATGGGCGCACGGGCTACGTTCTGCAGCCTGA TTTTCTCTCAATGGGCGCATGGGCTACGTTCTGCAGCCTGA < 41bp 0.554335983955102 0.756205647956394 NA NA prediction 0.403739328002585 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81971412 chr16:81971411 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_36697 0 0 0 0 2 PLCG2 chr16:81971508 5'GT 81971508 Upstream 98bp 33760 chrX 129505595 129505595 1 + C T CESC 129505596 + 129505576 129505616 41 ATTTTGGCCAAACTGGCTTCGGCTTGGACCCTGGAACATCA ATTTTGGCCAAACTGGCTTTGGCTTGGACCCTGGAACATCA < 41bp 0.527314489973862 0.72918266429017 NA NA prediction 0.403736348632616 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129505596 chrX:129505595 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_36699 0 0 1 0 2 SLC25A14 chrX:129505538 3'AG 129505538 Downstream 58bp 33761 chrX 129505595 129505595 1 + C T CESC 129505596 + 129505576 129505616 41 ATTTTGGCCAAACTGGCTTCGGCTTGGACCCTGGAACATCA ATTTTGGCCAAACTGGCTTTGGCTTGGACCCTGGAACATCA < 41bp 0.527314489973862 0.72918266429017 NA NA prediction 0.403736348632616 Functional Gain - SLC25A14 ENSG00000102078 CDS Human protein_coding chrX:129505596 chrX:129505595 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_36699 0 0 1 0 2 SLC25A14 chrX:129505618 5'GT 129505618 Upstream 24bp 33762 chr12 113824842 113824842 1 + C T LGG 113824843 + 113824823 113824863 41 CCCCCGGGCCCAGATCTTCCGGCGGAACCAGTCACTGGTAC CCCCCGGGCCCAGATCTTCTGGCGGAACCAGTCACTGGTAC < 41bp 0.547252733331762 0.749120026221194 NA NA prediction 0.403734585778863 Functional Gain - PLBD2 ENSG00000151176 CDS Human protein_coding chr12:113824843 chr12:113824842 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_36700 0 0 1 0 1 PLBD2 chr12:113824894 5'GT 113824894 Upstream 53bp 33763 chr1 45974548 45974548 1 + G A BRCA 45974549 + 45974529 45974569 41 TGCTGCTGCCAGGGATAGAGGTGCCAGATCTGCCACCCAGA TGCTGCTGCCAGGGATAGAAGTGCCAGATCTGCCACCCAGA < 41bp 0.504511537357756 0.706377082314311 NA NA prediction 0.403731089913109 Functional Gain - MMACHC ENSG00000132763 CDS Human protein_coding chr1:45974549 chr1:45974548 synonymous SNV . 0 20 hm7G_associated_SNPs_36701 0 0 0 1 1 MMACHC chr1:45974468 3'AG 45974468 Downstream 81bp 33764 chr7 92164195 92164195 1 + G T PAAD 92164196 + 92164176 92164216 41 TGGTAATGAGATTATGATTGGACCTCTGTTACCAGACATCT TGGTAATGAGATTATGATTTGACCTCTGTTACCAGACATCT < 41bp 0.404684664851566 0.701863399804893 NA NA prediction 0.403726799609786 Functional Gain - RBM48 ENSG00000127993 CDS Human protein_coding chr7:92164196 chr7:92164195 stopgain 0.997 1 20 hm7G_associated_SNPs_36703 0 0 1 0 1 RBM48 chr7:92164284 5'GT 92164284 Upstream 90bp 33765 chr1 2328642 2328642 1 + C T READ 2328643 + 2328623 2328663 41 GAGCTTTGTCTACATGATTCGAGTTTACCTGCTGCAGGTAG GAGCTTTGTCTACATGATTTGAGTTTACCTGCTGCAGGTAG < 41bp 0.481534181345698 0.701862354206336 NA NA prediction 0.403724708412671 Functional Gain - RER1 ENSG00000157916 CDS Human protein_coding chr1:2328643 chr1:2328642 stopgain 0.971 0 20 hm7G_associated_SNPs_36705 0 0 1 0 2 RER1 chr1:2328555 3'AG 2328555 Downstream 88bp 33766 chr1 2328642 2328642 1 + C T READ 2328643 + 2328623 2328663 41 GAGCTTTGTCTACATGATTCGAGTTTACCTGCTGCAGGTAG GAGCTTTGTCTACATGATTTGAGTTTACCTGCTGCAGGTAG < 41bp 0.481534181345698 0.701862354206336 NA NA prediction 0.403724708412671 Functional Gain - RER1 ENSG00000157916 CDS Human protein_coding chr1:2328643 chr1:2328642 stopgain 0.971 0 20 hm7G_associated_SNPs_36705 0 0 1 0 2 RER1 chr1:2328659 5'GT 2328659 Upstream 18bp 33767 chr9 140728837 140728837 1 + G T READ 140728838 + 140728818 140728858 41 CATCGACGCGCGGTTCTACGGGAACGTCAGCCGGTTCATCA CATCGACGCGCGGTTCTACTGGAACGTCAGCCGGTTCATCA < 41bp 0.352073498932836 0.701860812258167 NA NA prediction 0.403721624516335 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140728838 chr9:140728837 nonsynonymous SNV 0.961 5 20 hm7G_associated_SNPs_36707 0 0 1 0 1 EHMT1 chr9:140728801 3'AG 140728801 Downstream 37bp 33768 chr22 17577965 17577965 1 + C T rs143008696 17577966 + 17577946 17577986 41 CCACAGGGGCTAAACTGCACGGTCAAGAATAGTAAGTCATC CCACAGGGGCTAAACTGCATGGTCAAGAATAGTAAGTCATC < 41bp 0.496288856408492 0.70185971677549 NA NA prediction 0.40371943355098 Functional Gain - IL17RA ENSG00000177663 CDS Human protein_coding chr22:17577966 chr22:17577965 nonsynonymous SNV 0.498 1 20 hm7G_associated_SNPs_36709 1 1 0 0 2 IL17RA chr22:17577952 3'AG 17577952 Downstream 14bp 33769 chr22 17577965 17577965 1 + C T rs143008696 17577966 + 17577946 17577986 41 CCACAGGGGCTAAACTGCACGGTCAAGAATAGTAAGTCATC CCACAGGGGCTAAACTGCATGGTCAAGAATAGTAAGTCATC < 41bp 0.496288856408492 0.70185971677549 NA NA prediction 0.40371943355098 Functional Gain - IL17RA ENSG00000177663 CDS Human protein_coding chr22:17577966 chr22:17577965 nonsynonymous SNV 0.498 1 20 hm7G_associated_SNPs_36709 1 1 0 0 2 IL17RA chr22:17577976 5'GT 17577976 Upstream 12bp 33770 chr9 134051001 134051001 1 + G T UCEC 134051002 + 134050982 134051022 41 GGCGGCAGATGGCCAGTCAGGCACCAGGTAAAAGCTGTAGC GGCGGCAGATGGCCAGTCATGCACCAGGTAAAAGCTGTAGC < 41bp 0.354130401239074 0.701859010985553 NA NA prediction 0.403718021971106 Functional Gain - NUP214 ENSG00000126883 CDS Human protein_coding chr9:134051002 chr9:134051001 nonsynonymous SNV 0.936 3 20 hm7G_associated_SNPs_36710 0 0 1 0 1 NUP214 chr9:134051008 5'GT 134051008 Upstream 8bp 33771 chr6 43402444 43402444 1 + G A OV 43402445 + 43402425 43402465 41 GCCCGAGTAGAGGCCTGCCGGGCTCGAGAGCTGGGGCGACT GCCCGAGTAGAGGCCTGCCAGGCTCGAGAGCTGGGGCGACT < 41bp 0.597395466416299 0.799253125110909 NA NA prediction 0.403715317389222 Functional Gain - ABCC10 ENSG00000124574 CDS Human protein_coding chr6:43402445 chr6:43402444 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_36711 0 0 1 0 1 ABCC10 chr6:43402359 3'AG 43402359 Downstream 86bp 33772 chr7 129909568 129909568 1 + C T LGG 129909569 + 129909549 129909589 41 CCCACGTCCGAGTTCCCTTCGTCAACGTCCAGGCAGTCAAA CCCACGTCCGAGTTCCCTTTGTCAACGTCCAGGCAGTCAAA < 41bp 0.511857540196054 0.713714652136503 NA NA prediction 0.403714223880898 Functional Gain - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129909569 chr7:129909568 synonymous SNV . 0 20 hm7G_associated_SNPs_36712 0 0 0 0 2 CPA2 chr7:129909509 3'AG 129909509 Downstream 60bp 33773 chr7 129909568 129909568 1 + C T LGG 129909569 + 129909549 129909589 41 CCCACGTCCGAGTTCCCTTCGTCAACGTCCAGGCAGTCAAA CCCACGTCCGAGTTCCCTTTGTCAACGTCCAGGCAGTCAAA < 41bp 0.511857540196054 0.713714652136503 NA NA prediction 0.403714223880898 Functional Gain - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129909569 chr7:129909568 synonymous SNV . 0 20 hm7G_associated_SNPs_36712 0 0 0 0 2 CPA2 chr7:129909643 5'GT 129909643 Upstream 76bp 33774 chr20 30409334 30409334 1 + G A SKCM 30409335 + 30409315 30409355 41 CACAGCCCCACGGATCCCAGGCCAGCCAAGGCAGAAGAAGG CACAGCCCCACGGATCCCAAGCCAGCCAAGGCAGAAGAAGG < 41bp 0.463866996394445 0.70185644156019 NA NA prediction 0.403712883120379 Functional Gain - MYLK2 ENSG00000101306 CDS Human protein_coding chr20:30409335 chr20:30409334 nonsynonymous SNV 0.710 0 20 hm7G_associated_SNPs_36714 0 0 0 0 1 MYLK2 chr20:30409242 3'AG 30409242 Downstream 93bp 33775 chr1 17273397 17273397 1 + C T rs140906244 17273398 + 17273378 17273418 41 GGGCCTGGAGGGCTCCCTACGAGTGGCGGAGCAGGCCCAGG GGGCCTGGAGGGCTCCCTATGAGTGGCGGAGCAGGCCCAGG < 41bp 0.499859495155955 0.70185573351624 NA NA prediction 0.403711467032481 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17273398 chr1:17273397 stopgain 0.018 0 20 hm7G_associated_SNPs_36715 0 0 0 0 1 CROCC chr1:17273486 5'GT 17273486 Upstream 90bp 33776 chr20 2575609 2575609 1 + C T UCEC 2575610 + 2575590 2575630 41 CAGCCTGATTATTGTCATTCGATCGTAAGTATGACCGTCTC CAGCCTGATTATTGTCATTTGATCGTAAGTATGACCGTCTC < 41bp 0.53781375643736 0.739667735891411 NA NA prediction 0.403707958908101 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2575610 chr20:2575609 stopgain 0.994 1 20 hm7G_associated_SNPs_36717 0 0 0 0 1 TMC2 chr20:2575613 5'GT 2575613 Upstream 5bp 33777 chr20 30737478 30737478 1 + C T OV 30737479 + 30737459 30737499 41 GGTGGAAGTTGGTGCACGGCGACGTCTTCAGGCCCCCCCAG GGTGGAAGTTGGTGCACGGTGACGTCTTCAGGCCCCCCCAG < 41bp 0.488132334399071 0.701853828566583 NA NA prediction 0.403707657133165 Functional Gain - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30737479 chr20:30737478 synonymous SNV . 0 20 hm7G_associated_SNPs_36718 0 0 1 0 2 TM9SF4 chr20:30737437 3'AG 30737437 Downstream 42bp 33778 chr20 30737478 30737478 1 + C T OV 30737479 + 30737459 30737499 41 GGTGGAAGTTGGTGCACGGCGACGTCTTCAGGCCCCCCCAG GGTGGAAGTTGGTGCACGGTGACGTCTTCAGGCCCCCCCAG < 41bp 0.488132334399071 0.701853828566583 NA NA prediction 0.403707657133165 Functional Gain - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30737479 chr20:30737478 synonymous SNV . 0 20 hm7G_associated_SNPs_36718 0 0 1 0 2 TM9SF4 chr20:30737569 5'GT 30737569 Upstream 92bp 33779 chrX 100496666 100496666 1 + C T HNSC 100496667 + 100496647 100496687 41 CCTCTTGCAGATACCTCCCCGAAACAGCGGATCCAGAATCT CCTCTTGCAGATACCTCCCTGAAACAGCGGATCCAGAATCT < 41bp 0.548553915513128 0.750406200572165 NA NA prediction 0.403704570118075 Functional Gain - DRP2 ENSG00000102385 CDS Human protein_coding chrX:100496667 chrX:100496666 nonsynonymous SNV 0.995 2 20 hm7G_associated_SNPs_36719 0 0 0 0 1 DRP2 chrX:100496657 3'AG 100496657 Downstream 10bp 33780 chr11 43465681 43465681 1 + G T COAD 43465682 + 43465662 43465702 41 TGGGAAAAAAGTAGAAACAGGTCAGATAGAAAATGGACATC TGGGAAAAAAGTAGAAACATGTCAGATAGAAAATGGACATC < 41bp 0.371168415008676 0.701852182992402 NA NA prediction 0.403704365984805 Functional Gain - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465682 chr11:43465681 nonsynonymous SNV 0.650 1 20 hm7G_associated_SNPs_36720 0 0 1 0 2 TTC17 chr11:43465606 3'AG 43465606 Downstream 76bp 33781 chr11 43465681 43465681 1 + G T COAD 43465682 + 43465662 43465702 41 TGGGAAAAAAGTAGAAACAGGTCAGATAGAAAATGGACATC TGGGAAAAAAGTAGAAACATGTCAGATAGAAAATGGACATC < 41bp 0.371168415008676 0.701852182992402 NA NA prediction 0.403704365984805 Functional Gain - TTC17 ENSG00000052841 CDS Human protein_coding chr11:43465682 chr11:43465681 nonsynonymous SNV 0.650 1 20 hm7G_associated_SNPs_36720 0 0 1 0 2 TTC17 chr11:43465759 5'GT 43465759 Upstream 79bp 33782 chr1 154516476 154516476 1 + C T BRCA 154516477 + 154516457 154516497 41 GCTCCTGAGGGAATGCTTCCGAGACCTGAGCTGGCTGGCAC GCTCCTGAGGGAATGCTTCTGAGACCTGAGCTGGCTGGCAC < 41bp 0.551829416952996 0.75367908784975 NA NA prediction 0.403699341793509 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516477 chr1:154516476 stopgain 0.020 0 20 hm7G_associated_SNPs_36722 0 0 0 0 1 TDRD10 chr1:154516439 3'AG 154516439 Downstream 38bp 33783 chr5 56152566 56152566 1 + C T COAD 56152567 + 56152547 56152587 41 GTTGGAAAGGAGAAATAGGCGAGGGCCTGTGGTAAGTGGCT GTTGGAAAGGAGAAATAGGTGAGGGCCTGTGGTAAGTGGCT < 41bp 0.49601384987361 0.701849182107079 NA NA prediction 0.403698364214158 Functional Gain - MAP3K1 ENSG00000095015 CDS Human protein_coding chr5:56152567 chr5:56152566 stopgain 0.982 1 20 hm7G_associated_SNPs_36723 0 0 1 0 1 MAP3K1 chr5:56152577 5'GT 56152577 Upstream 12bp 33784 chr15 40675233 40675233 1 + G A BLCA 40675234 + 40675214 40675254 41 AAGGACTGCGGGCAGGACCGGCGGGCTCCTGGGTTCGGCTC AAGGACTGCGGGCAGGACCAGCGGGCTCCTGGGTTCGGCTC < 41bp 0.541246721188309 0.743095174667482 NA NA prediction 0.403696906958347 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40675234 chr15:40675233 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_36724 0 0 1 0 1 KNSTRN chr15:40675245 5'GT 40675245 Upstream 13bp 33785 chr22 18185121 18185121 1 + C T GBM 18185122 + 18185102 18185142 41 ACATACCTGGAGGACTATTCGGCAGAGTACATCATTCAGCA ACATACCTGGAGGACTATTTGGCAGAGTACATCATTCAGCA < 41bp 0.518398613392647 0.720243500606119 NA NA prediction 0.403689774426944 Functional Gain - BCL2L13 ENSG00000099968 CDS Human protein_coding chr22:18185122 chr22:18185121 nonsynonymous SNV 0.847 0 20 hm7G_associated_SNPs_36727 0 0 1 0 1 BCL2L13 chr22:18185152 5'GT 18185152 Upstream 32bp 33786 chr1 220826496 220826496 1 + C T CESC 220826497 + 220826477 220826517 41 GCTCACAGTATTAGTACTGCGACTCCAGACCGGACCCGTTT GCTCACAGTATTAGTACTGTGACTCCAGACCGGACCCGTTT < 41bp 0.533683909686142 0.73552849364478 NA NA prediction 0.403689167917275 Functional Gain - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220826497 chr1:220826496 nonsynonymous SNV 0.842 0 20 hm7G_associated_SNPs_36728 0 0 1 0 2 MARK1 chr1:220826440 3'AG 220826440 Downstream 57bp 33787 chr1 220826496 220826496 1 + C T CESC 220826497 + 220826477 220826517 41 GCTCACAGTATTAGTACTGCGACTCCAGACCGGACCCGTTT GCTCACAGTATTAGTACTGTGACTCCAGACCGGACCCGTTT < 41bp 0.533683909686142 0.73552849364478 NA NA prediction 0.403689167917275 Functional Gain - MARK1 ENSG00000116141 CDS Human protein_coding chr1:220826497 chr1:220826496 nonsynonymous SNV 0.842 0 20 hm7G_associated_SNPs_36728 0 0 1 0 2 MARK1 chr1:220826443 3'AG 220826443 Downstream 54bp 33788 chr22 38019438 38019438 1 + C T rs368154696 38019439 + 38019419 38019459 41 TGATGAGCCACAGCCAGGGCGGCGCAGCAGCTGGCAGCAGC TGATGAGCCACAGCCAGGGTGGCGCAGCAGCTGGCAGCAGC < 41bp 0.558737746062739 0.760581197890173 NA NA prediction 0.403686903654868 Functional Gain - GGA1 ENSG00000100083 CDS Human protein_coding chr22:38019439 chr22:38019438 synonymous SNV . 0 20 hm7G_associated_SNPs_36730 0 0 1 0 1 GGA1 chr22:38019474 5'GT 38019474 Upstream 37bp 33789 chr17 20805554 20805554 1 + G T HNSC 20805555 + 20805535 20805575 41 TCTAATGCCTACATTTAAAGGATAGCCCGGCCCCCAGTAAA TCTAATGCCTACATTTAAATGATAGCCCGGCCCCCAGTAAA < 41bp 0.386065091967765 0.701843382911138 NA NA prediction 0.403686765822277 Functional Gain - CCDC144NL-AS1 ENSG00000233098;ENSG00000265790 ncRNA_exonic Human other chr17:20805555 chr17:20805554 . . 0 20 hm7G_associated_SNPs_36731 0 0 0 0 1 CCDC144NL-AS1 chr17:20805531 3'AG 20805531 Downstream 24bp 33790 chr1 23235533 23235533 1 + C T UCEC 23235534 + 23235514 23235554 41 GGGCGGAAAGATCCCCATCCGCTGGACAGCCCCGGAAGCCA GGGCGGAAAGATCCCCATCTGCTGGACAGCCCCGGAAGCCA < 41bp 0.556108319547409 0.75795093238062 NA NA prediction 0.403685225666423 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23235534 chr1:23235533 nonsynonymous SNV 0.946 5 20 hm7G_associated_SNPs_36733 0 0 0 0 1 EPHB2 chr1:23235515 3'AG 23235515 Downstream 19bp 33791 chr19 11141493 11141493 1 + G A THYM 11141494 + 11141474 11141514 41 ATCTTCCTGCTCAGCACCCGGGCTGGGGGGCTCGGCCTGAA ATCTTCCTGCTCAGCACCCAGGCTGGGGGGCTCGGCCTGAA < 41bp 0.518690368904443 0.720532462003923 NA NA prediction 0.40368418619896 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141494 chr19:11141493 nonsynonymous SNV 0.918 4 20 hm7G_associated_SNPs_36734 0 0 1 0 2 SMARCA4 chr19:11141406 3'AG 11141406 Downstream 88bp 33792 chr19 11141493 11141493 1 + G A THYM 11141494 + 11141474 11141514 41 ATCTTCCTGCTCAGCACCCGGGCTGGGGGGCTCGGCCTGAA ATCTTCCTGCTCAGCACCCAGGCTGGGGGGCTCGGCCTGAA < 41bp 0.518690368904443 0.720532462003923 NA NA prediction 0.40368418619896 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11141494 chr19:11141493 nonsynonymous SNV 0.918 4 20 hm7G_associated_SNPs_36734 0 0 1 0 2 SMARCA4 chr19:11141569 5'GT 11141569 Upstream 77bp 33793 chr18 192883 192883 1 + C T PRAD 192884 + 192864 192904 41 TCAGGGGAAATGGCTTCAGCGCAGTATATTACTGCAGGTTT TCAGGGGAAATGGCTTCAGTGCAGTATATTACTGCAGGTTT < 41bp 0.533038925363819 0.73488076397259 NA NA prediction 0.403683677217543 Functional Gain - USP14 ENSG00000101557 CDS Human protein_coding chr18:192884 chr18:192883 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_36735 0 0 1 0 2 USP14 chr18:192842 3'AG 192842 Downstream 42bp 33794 chr18 192883 192883 1 + C T PRAD 192884 + 192864 192904 41 TCAGGGGAAATGGCTTCAGCGCAGTATATTACTGCAGGTTT TCAGGGGAAATGGCTTCAGTGCAGTATATTACTGCAGGTTT < 41bp 0.533038925363819 0.73488076397259 NA NA prediction 0.403683677217543 Functional Gain - USP14 ENSG00000101557 CDS Human protein_coding chr18:192884 chr18:192883 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_36735 0 0 1 0 2 USP14 chr18:192900 5'GT 192900 Upstream 18bp 33795 chr10 133758887 133758887 1 + C T STAD 133758888 + 133758868 133758908 41 CGCACCAGTGCAACGTGTTCGTCTACAGCAGTAGCAAAGGG CGCACCAGTGCAACGTGTTTGTCTACAGCAGTAGCAAAGGG < 41bp 0.52390931511792 0.725748460394088 NA NA prediction 0.403678290552335 Functional Gain - PPP2R2D ENSG00000175470 CDS Human protein_coding chr10:133758888 chr10:133758887 synonymous SNV . 0 20 hm7G_associated_SNPs_36738 0 0 1 0 1 PPP2R2D chr10:133758799 3'AG 133758799 Downstream 89bp 33796 chr7 100030662 100030662 1 + C T COAD 100030663 + 100030643 100030683 41 GGGAGACGAGGGCCTGAAGCGCATGTTTCGCCGGATCTACC GGGAGACGAGGGCCTGAAGTGCATGTTTCGCCGGATCTACC < 41bp 0.537667294541441 0.739506068486526 NA NA prediction 0.403677547890171 Functional Gain - MEPCE ENSG00000146834 CDS Human protein_coding chr7:100030663 chr7:100030662 nonsynonymous SNV 0.996 2 20 hm7G_associated_SNPs_36739 0 0 1 0 1 MEPCE chr7:100030760 5'GT 100030760 Upstream 99bp 33797 chr19 55176287 55176287 1 + C T BLCA 55176288 + 55176268 55176308 41 GGCCCTCACCCACAAGGTCCGTCTCAACAGCTGGTGAGTCT GGCCCTCACCCACAAGGTCTGTCTCAACAGCTGGTGAGTCT < 41bp 0.500617751798215 0.70245436149299 NA NA prediction 0.403673219389548 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55176288 chr19:55176287 synonymous SNV . 0 20 hm7G_associated_SNPs_36740 0 0 0 0 2 LILRB4 chr19:55176250 3'AG 55176250 Downstream 38bp 33798 chr19 55176287 55176287 1 + C T BLCA 55176288 + 55176268 55176308 41 GGCCCTCACCCACAAGGTCCGTCTCAACAGCTGGTGAGTCT GGCCCTCACCCACAAGGTCTGTCTCAACAGCTGGTGAGTCT < 41bp 0.500617751798215 0.70245436149299 NA NA prediction 0.403673219389548 Functional Gain - LILRB4 ENSG00000186818 CDS Human protein_coding chr19:55176288 chr19:55176287 synonymous SNV . 0 20 hm7G_associated_SNPs_36740 0 0 0 0 2 LILRB4 chr19:55176300 5'GT 55176300 Upstream 14bp 33799 chr15 91419490 91419490 1 + C T rs73489557 91419491 + 91419471 91419511 41 CTGCTCTATTGCAGATCTTCGGGGACTATTACCACTTCTGG CTGCTCTATTGCAGATCTTTGGGGACTATTACCACTTCTGG < 41bp 0.53156475846204 0.733400836229858 NA NA prediction 0.403672155535634 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91419491 chr15:91419490 synonymous SNV . 0 20 hm7G_associated_SNPs_36741 0 0 1 0 2 FURIN chr15:91419485 3'AG 91419485 Downstream 6bp 33800 chr15 91419490 91419490 1 + C T rs73489557 91419491 + 91419471 91419511 41 CTGCTCTATTGCAGATCTTCGGGGACTATTACCACTTCTGG CTGCTCTATTGCAGATCTTTGGGGACTATTACCACTTCTGG < 41bp 0.53156475846204 0.733400836229858 NA NA prediction 0.403672155535634 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91419491 chr15:91419490 synonymous SNV . 0 20 hm7G_associated_SNPs_36741 0 0 1 0 2 FURIN chr15:91419583 5'GT 91419583 Upstream 94bp 33801 chr15 41229658 41229658 1 + G A SKCM 41229659 + 41229639 41229679 41 CAGCGATATGCTCCCCCAGGGACTCCATGTACCAGTCTGTG CAGCGATATGCTCCCCCAGAGACTCCATGTACCAGTCTGTG < 41bp 0.513526321593961 0.715362074961588 NA NA prediction 0.403671506735255 Functional Gain - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41229659 chr15:41229658 synonymous SNV . 0 20 hm7G_associated_SNPs_36742 0 0 0 0 2 DLL4 chr15:41229616 3'AG 41229616 Downstream 43bp 33802 chr15 41229658 41229658 1 + G A SKCM 41229659 + 41229639 41229679 41 CAGCGATATGCTCCCCCAGGGACTCCATGTACCAGTCTGTG CAGCGATATGCTCCCCCAGAGACTCCATGTACCAGTCTGTG < 41bp 0.513526321593961 0.715362074961588 NA NA prediction 0.403671506735255 Functional Gain - DLL4 ENSG00000128917 CDS Human protein_coding chr15:41229659 chr15:41229658 synonymous SNV . 0 20 hm7G_associated_SNPs_36742 0 0 0 0 2 DLL4 chr15:41229724 5'GT 41229724 Upstream 67bp 33803 chr16 2028206 2028206 1 + C T LUSC 2028207 + 2028187 2028227 41 AGCCACCATGCTCCGACTGCGGCGCGACCAGAAAGGTTGGC AGCCACCATGCTCCGACTGTGGCGCGACCAGAAAGGTTGGC < 41bp 0.53821150821037 0.74004715748763 NA NA prediction 0.403671298554519 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2028207 chr16:2028206 nonsynonymous SNV 0.394 4 20 hm7G_associated_SNPs_36743 0 0 1 0 2 TBL3 chr16:2028150 3'AG 2028150 Downstream 57bp 33804 chr16 2028206 2028206 1 + C T LUSC 2028207 + 2028187 2028227 41 AGCCACCATGCTCCGACTGCGGCGCGACCAGAAAGGTTGGC AGCCACCATGCTCCGACTGTGGCGCGACCAGAAAGGTTGGC < 41bp 0.53821150821037 0.74004715748763 NA NA prediction 0.403671298554519 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2028207 chr16:2028206 nonsynonymous SNV 0.394 4 20 hm7G_associated_SNPs_36743 0 0 1 0 2 TBL3 chr16:2028221 5'GT 2028221 Upstream 16bp 33805 chrX 1746653 1746653 1 + G A SKCM 1746654 + 1746634 1746674 41 CCGCTGAAGAGCTTTTTACGGCCATCTACAGGTAACACCCA CCGCTGAAGAGCTTTTTACAGCCATCTACAGGTAACACCCA < 41bp 0.542435077034796 0.744268707972779 NA NA prediction 0.403667261875964 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1746654 chrX:1746653 synonymous SNV . 0 20 hm7G_associated_SNPs_36745 0 0 0 0 2 ASMT chrX:1746596 3'AG 1746596 Downstream 58bp 33806 chrX 1746653 1746653 1 + G A SKCM 1746654 + 1746634 1746674 41 CCGCTGAAGAGCTTTTTACGGCCATCTACAGGTAACACCCA CCGCTGAAGAGCTTTTTACAGCCATCTACAGGTAACACCCA < 41bp 0.542435077034796 0.744268707972779 NA NA prediction 0.403667261875964 Functional Gain - ASMT ENSG00000196433 CDS Human protein_coding chrX:1746654 chrX:1746653 synonymous SNV . 0 20 hm7G_associated_SNPs_36745 0 0 0 0 2 ASMT chrX:1746664 5'GT 1746664 Upstream 12bp 33807 chr3 9803358 9803358 1 - C T COAD 9803357 - 9803337 9803377 41 TCTCCAAGATGGAGGACCCGGGCAGTGTGCTCTCCACCGCC TCTCCAAGATGGAGGACCCAGGCAGTGTGCTCTCCACCGCC < 41bp 0.570975214302039 0.772804569911302 NA NA prediction 0.403658711218525 Functional Gain - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803357 chr3:9803358 synonymous SNV . 0 20 hm7G_associated_SNPs_36748 0 0 1 0 2 CAMK1 chr3:9803315 5'GT 9803315 Upstream 44bp 33808 chr3 9803358 9803358 1 - C T COAD 9803357 - 9803337 9803377 41 TCTCCAAGATGGAGGACCCGGGCAGTGTGCTCTCCACCGCC TCTCCAAGATGGAGGACCCAGGCAGTGTGCTCTCCACCGCC < 41bp 0.570975214302039 0.772804569911302 NA NA prediction 0.403658711218525 Functional Gain - CAMK1 ENSG00000134072 CDS Human protein_coding chr3:9803357 chr3:9803358 synonymous SNV . 0 20 hm7G_associated_SNPs_36748 0 0 1 0 2 CAMK1 chr3:9803441 3'AG 9803441 Downstream 84bp 33809 chr11 119050500 119050500 1 + C T UCEC 119050501 + 119050481 119050521 41 GAGAGGAGGACTACTACAACGATGATGTTCTGGACCAGATG GAGAGGAGGACTACTACAATGATGATGTTCTGGACCAGATG < 41bp 0.495186543642566 0.7018249320248 NA NA prediction 0.4036498640496 Functional Gain - NLRX1 ENSG00000160703 CDS Human protein_coding chr11:119050501 chr11:119050500 synonymous SNV . 0 20 hm7G_associated_SNPs_36751 0 0 1 0 1 NLRX1 chr11:119050402 3'AG 119050402 Downstream 99bp 33810 chr17 7912824 7912824 1 + G A SKCM 7912825 + 7912805 7912845 41 CCCATCCTCTTTGCTGCAGGGAGACAGGGTTTGGCTGAAGA CCCATCCTCTTTGCTGCAGAGAGACAGGGTTTGGCTGAAGA < 41bp 0.495800730510153 0.701822724727253 NA NA prediction 0.403645449454507 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7912825 chr17:7912824 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_36754 0 0 0 0 2 GUCY2D chr17:7912824 3'AG 7912824 Downstream 1bp 33811 chr17 7912824 7912824 1 + G A SKCM 7912825 + 7912805 7912845 41 CCCATCCTCTTTGCTGCAGGGAGACAGGGTTTGGCTGAAGA CCCATCCTCTTTGCTGCAGAGAGACAGGGTTTGGCTGAAGA < 41bp 0.495800730510153 0.701822724727253 NA NA prediction 0.403645449454507 Functional Gain - GUCY2D ENSG00000132518 CDS Human protein_coding chr17:7912825 chr17:7912824 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_36754 0 0 0 0 2 GUCY2D chr17:7912904 5'GT 7912904 Upstream 81bp 33812 chr22 21343948 21343948 1 + C T COAD 21343949 + 21343929 21343969 41 GACAATTGGCCTCCAGGACCGAGAGCTCACCTGCTGGGAGG GACAATTGGCCTCCAGGACTGAGAGCTCACCTGCTGGGAGG < 41bp 0.541494390760357 0.743316979682421 NA NA prediction 0.403645177844129 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21343949 chr22:21343948 stopgain 0.999 1 20 hm7G_associated_SNPs_36755 0 0 1 0 2 LZTR1 chr22:21343914 3'AG 21343914 Downstream 35bp 33813 chr22 21343948 21343948 1 + C T COAD 21343949 + 21343929 21343969 41 GACAATTGGCCTCCAGGACCGAGAGCTCACCTGCTGGGAGG GACAATTGGCCTCCAGGACTGAGAGCTCACCTGCTGGGAGG < 41bp 0.541494390760357 0.743316979682421 NA NA prediction 0.403645177844129 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21343949 chr22:21343948 stopgain 0.999 1 20 hm7G_associated_SNPs_36755 0 0 1 0 2 LZTR1 chr22:21343971 5'GT 21343971 Upstream 24bp 33814 chr22 45110489 45110489 1 + C T SKCM 45110490 + 45110470 45110510 41 GCATCCACAACGGGGTGATCGCCGTCTTCCAGCGCAAGGGG GCATCCACAACGGGGTGATTGCCGTCTTCCAGCGCAAGGGG < 41bp 0.489473032989956 0.701820421183338 NA NA prediction 0.403640842366677 Functional Gain - PRR5;PRR5-ARHGAP8 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45110490 chr22:45110489 synonymous SNV . 0 20 hm7G_associated_SNPs_36756 0 0 1 1 2 PRR5;PRR5-ARHGAP8 chr22:45110471 3'AG 45110471 Downstream 19bp 33815 chr22 45110489 45110489 1 + C T SKCM 45110490 + 45110470 45110510 41 GCATCCACAACGGGGTGATCGCCGTCTTCCAGCGCAAGGGG GCATCCACAACGGGGTGATTGCCGTCTTCCAGCGCAAGGGG < 41bp 0.489473032989956 0.701820421183338 NA NA prediction 0.403640842366677 Functional Gain - PRR5;PRR5-ARHGAP8 ENSG00000186654;ENSG00000241484;ENSG00000248405 CDS Human other chr22:45110490 chr22:45110489 synonymous SNV . 0 20 hm7G_associated_SNPs_36756 0 0 1 1 2 PRR5;PRR5-ARHGAP8 chr22:45110551 5'GT 45110551 Upstream 63bp 33816 chr19 1360225 1360225 1 + C T CESC 1360226 + 1360206 1360246 41 GACGTTCTGAGCGAGGGCTCGATTTGGAGTCAAGAAAGCTC GACGTTCTGAGCGAGGGCTTGATTTGGAGTCAAGAAAGCTC < 41bp 0.497877038625921 0.701818254849149 NA NA prediction 0.403636509698299 Functional Gain - MUM1 ENSG00000160953 CDS Human protein_coding chr19:1360226 chr19:1360225 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_36758 0 0 1 0 1 MUM1 chr19:1360135 3'AG 1360135 Downstream 91bp 33817 chr2 234858728 234858728 1 + C T rs145944024 234858729 + 234858709 234858749 41 CGTCAAGGAGAAGCTGGTGCGCTTTTTACCCCGCACGGTGT CGTCAAGGAGAAGCTGGTGTGCTTTTTACCCCGCACGGTGT < 41bp 0.485108302442549 0.701817967445712 NA NA prediction 0.403635934891424 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234858729 chr2:234858728 nonsynonymous SNV 0.901 2 20 hm7G_associated_SNPs_36759 0 0 0 0 1 TRPM8 chr2:234858790 5'GT 234858790 Upstream 63bp 33818 chr19 47884088 47884088 1 + C T STAD 47884089 + 47884069 47884109 41 TTAGATTCCTTACAGCCTCCGGCGGCTCACAGGGCTAGAAG TTAGATTCCTTACAGCCTCTGGCGGCTCACAGGGCTAGAAG < 41bp 0.541392751081693 0.743210575520838 NA NA prediction 0.40363564887829 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47884089 chr19:47884088 nonsynonymous SNV 0.174 3 20 hm7G_associated_SNPs_36760 0 0 1 0 1 DHX34 chr19:47884073 3'AG 47884073 Downstream 16bp 33819 chr12 122337731 122337731 1 + G A UCEC 122337732 + 122337712 122337752 41 AGTGAACAGCATCAGCCCCGGCTCCCCAGCCAGCATCGCGG AGTGAACAGCATCAGCCCCAGCTCCCCAGCCAGCATCGCGG < 41bp 0.475177976828998 0.70181686557571 NA NA prediction 0.40363373115142 Functional Gain - PSMD9 ENSG00000110801 CDS Human protein_coding chr12:122337732 chr12:122337731 nonsynonymous SNV 0.848 3 20 hm7G_associated_SNPs_36761 0 0 1 0 1 PSMD9 chr12:122337751 5'GT 122337751 Upstream 21bp 33820 chr17 41931336 41931336 1 + C T LUAD 41931337 + 41931317 41931357 41 TCCTCCTGCAGGGAGCTCCCGCCCCCCCATGCAGCTGGACT TCCTCCTGCAGGGAGCTCCTGCCCCCCCATGCAGCTGGACT < 41bp 0.529004691385907 0.730819213874349 NA NA prediction 0.403629044976884 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41931337 chr17:41931336 nonsynonymous SNV 0.345 3 20 hm7G_associated_SNPs_36762 0 0 0 0 2 CD300LG chr17:41931328 3'AG 41931328 Downstream 9bp 33821 chr17 41931336 41931336 1 + C T LUAD 41931337 + 41931317 41931357 41 TCCTCCTGCAGGGAGCTCCCGCCCCCCCATGCAGCTGGACT TCCTCCTGCAGGGAGCTCCTGCCCCCCCATGCAGCTGGACT < 41bp 0.529004691385907 0.730819213874349 NA NA prediction 0.403629044976884 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41931337 chr17:41931336 nonsynonymous SNV 0.345 3 20 hm7G_associated_SNPs_36762 0 0 0 0 2 CD300LG chr17:41931412 5'GT 41931412 Upstream 77bp 33822 chr5 139907493 139907493 1 + C T COAD 139907494 + 139907474 139907514 41 GTTCCAGCCTCAGTGGTGTCGAGGATAATGGGAAGAGGAGG GTTCCAGCCTCAGTGGTGTTGAGGATAATGGGAAGAGGAGG < 41bp 0.522091218119365 0.723905337160424 NA NA prediction 0.403628238082118 Functional Gain - ANKHD1;ANKHD1-EIF4EBP3 ENSG00000131503;ENSG00000254996 CDS Human other chr5:139907494 chr5:139907493 nonsynonymous SNV 0.797 4 20 hm7G_associated_SNPs_36763 0 0 1 0 1 ANKHD1;ANKHD1-EIF4EBP3 chr5:139907458 3'AG 139907458 Downstream 36bp 33823 chr19 19454737 19454737 1 + G A rs199766720 19454738 + 19454718 19454758 41 TCACGGGTCACAAGGCCACGGCGCTGCAGGAGGTAAGGCTG TCACGGGTCACAAGGCCACAGCGCTGCAGGAGGTAAGGCTG < 41bp 0.578449872545401 0.780263714296921 NA NA prediction 0.403627683503039 Functional Gain - MAU2 ENSG00000129933 CDS Human protein_coding chr19:19454738 chr19:19454737 synonymous SNV . 0 20 hm7G_associated_SNPs_36764 0 0 1 0 2 MAU2 chr19:19454646 3'AG 19454646 Downstream 92bp 33824 chr19 19454737 19454737 1 + G A rs199766720 19454738 + 19454718 19454758 41 TCACGGGTCACAAGGCCACGGCGCTGCAGGAGGTAAGGCTG TCACGGGTCACAAGGCCACAGCGCTGCAGGAGGTAAGGCTG < 41bp 0.578449872545401 0.780263714296921 NA NA prediction 0.403627683503039 Functional Gain - MAU2 ENSG00000129933 CDS Human protein_coding chr19:19454738 chr19:19454737 synonymous SNV . 0 20 hm7G_associated_SNPs_36764 0 0 1 0 2 MAU2 chr19:19454749 5'GT 19454749 Upstream 13bp 33825 chr16 1814419 1814419 1 + G T LUSC 1814420 + 1814400 1814440 41 CTGCGACCGCGAAGGAGACGGCGAGCCCAAGAGCGCCCACA CTGCGACCGCGAAGGAGACTGCGAGCCCAAGAGCGCCCACA < 41bp 0.338202056777695 0.701811765866311 NA NA prediction 0.403623531732622 Functional Gain - MAPK8IP3 ENSG00000138834 CDS Human protein_coding chr16:1814420 chr16:1814419 nonsynonymous SNV 0.002 3 20 hm7G_associated_SNPs_36767 0 0 1 0 1 MAPK8IP3 chr16:1814460 5'GT 1814460 Upstream 42bp 33826 chrX 48417337 48417337 1 + C T UCEC 48417338 + 48417318 48417358 41 CCAAAGATGTCATTGGCTCCGACGTGTTGCTGGCTGAGAAA CCAAAGATGTCATTGGCTCTGACGTGTTGCTGGCTGAGAAA < 41bp 0.493194011353637 0.701808204064773 NA NA prediction 0.403616408129547 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417338 chrX:48417337 stopgain . 0 20 hm7G_associated_SNPs_36768 0 0 0 0 2 TBC1D25 chrX:48417285 3'AG 48417285 Downstream 53bp 33827 chrX 48417337 48417337 1 + C T UCEC 48417338 + 48417318 48417358 41 CCAAAGATGTCATTGGCTCCGACGTGTTGCTGGCTGAGAAA CCAAAGATGTCATTGGCTCTGACGTGTTGCTGGCTGAGAAA < 41bp 0.493194011353637 0.701808204064773 NA NA prediction 0.403616408129547 Functional Gain - TBC1D25 ENSG00000068354 CDS Human protein_coding chrX:48417338 chrX:48417337 stopgain . 0 20 hm7G_associated_SNPs_36768 0 0 0 0 2 TBC1D25 chrX:48417412 5'GT 48417412 Upstream 76bp 33828 chr3 184295756 184295756 1 + C T SKCM 184295757 + 184295737 184295777 41 CTACAGCTGGGCTTGTCTTCGTGGTGGCTGTCGTGGTCATC CTACAGCTGGGCTTGTCTTTGTGGTGGCTGTCGTGGTCATC < 41bp 0.518481004647644 0.720288980288056 NA NA prediction 0.403615951280825 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295757 chr3:184295756 synonymous SNV . 0 20 hm7G_associated_SNPs_36769 0 0 0 0 2 EPHB3 chr3:184295686 3'AG 184295686 Downstream 71bp 33829 chr3 184295756 184295756 1 + C T SKCM 184295757 + 184295737 184295777 41 CTACAGCTGGGCTTGTCTTCGTGGTGGCTGTCGTGGTCATC CTACAGCTGGGCTTGTCTTTGTGGTGGCTGTCGTGGTCATC < 41bp 0.518481004647644 0.720288980288056 NA NA prediction 0.403615951280825 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184295757 chr3:184295756 synonymous SNV . 0 20 hm7G_associated_SNPs_36769 0 0 0 0 2 EPHB3 chr3:184295794 5'GT 184295794 Upstream 39bp 33830 chr6 139159593 139159593 1 + C T UCEC 139159594 + 139159574 139159614 41 ATCTTTTCCTTTTTGAGTCCGAAAGATTTGTGTGCCGCTGC ATCTTTTCCTTTTTGAGTCTGAAAGATTTGTGTGCCGCTGC < 41bp 0.533806149324377 0.735613418360273 NA NA prediction 0.403614538071792 Functional Gain - ECT2L ENSG00000203734 CDS Human protein_coding chr6:139159594 chr6:139159593 nonsynonymous SNV 0.980 4 20 hm7G_associated_SNPs_36771 0 0 1 0 1 ECT2L chr6:139159651 5'GT 139159651 Upstream 59bp 33831 chr2 36744629 36744629 1 + C T UCEC 36744630 + 36744610 36744650 41 GAGACAGAGGTGTGCCCACCGCTGCTCTGCCAGAACCCCTC GAGACAGAGGTGTGCCCACTGCTGCTCTGCCAGAACCCCTC < 41bp 0.489506216601437 0.701805654976731 NA NA prediction 0.403611309953462 Functional Gain - CRIM1 ENSG00000150938 CDS Human protein_coding chr2:36744630 chr2:36744629 nonsynonymous SNV 0.981 4 20 hm7G_associated_SNPs_36772 0 0 1 0 1 CRIM1 chr2:36744685 5'GT 36744685 Upstream 57bp 33832 chr1 173802613 173802613 1 + C T UCEC 173802614 + 173802594 173802634 41 CCAGATGGTCATGAAAATGCGGGAATATCTCTGTAATCTGC CCAGATGGTCATGAAAATGTGGGAATATCTCTGTAATCTGC < 41bp 0.541890975240634 0.743695990877298 NA NA prediction 0.403610031273328 Functional Gain - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173802614 chr1:173802613 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_36774 0 0 1 0 2 DARS2 chr1:173802514 3'AG 173802514 Downstream 100bp 33833 chr1 173802613 173802613 1 + C T UCEC 173802614 + 173802594 173802634 41 CCAGATGGTCATGAAAATGCGGGAATATCTCTGTAATCTGC CCAGATGGTCATGAAAATGTGGGAATATCTCTGTAATCTGC < 41bp 0.541890975240634 0.743695990877298 NA NA prediction 0.403610031273328 Functional Gain - DARS2 ENSG00000117593 CDS Human protein_coding chr1:173802614 chr1:173802613 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_36774 0 0 1 0 2 DARS2 chr1:173802637 5'GT 173802637 Upstream 25bp 33834 chr16 72132678 72132678 1 + C T CESC 72132679 + 72132659 72132699 41 GAGCCATCGGCTGTCCACTCGAGATCGAGACAGGTGATGTT GAGCCATCGGCTGTCCACTTGAGATCGAGACAGGTGATGTT < 41bp 0.543444298041271 0.745248461643507 NA NA prediction 0.403608327204472 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72132679 chr16:72132678 stopgain 0.088 1 20 hm7G_associated_SNPs_36775 0 0 1 0 1 DHX38 chr16:72132691 5'GT 72132691 Upstream 14bp 33835 chr22 31608409 31608409 1 + G A SKCM 31608410 + 31608390 31608430 41 GGACCATGTCCGCGCTGGCGGGTAAGGAAGGGCTGCTCCGC GGACCATGTCCGCGCTGGCAGGTAAGGAAGGGCTGCTCCGC < 41bp 0.586969824823865 0.788773399872003 NA NA prediction 0.403607150096275 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31608410 chr22:31608409 synonymous SNV . 0 20 hm7G_associated_SNPs_36776 0 0 1 0 1 LIMK2 chr22:31608410 5'GT 31608410 Upstream 2bp 33836 chr12 271119 271119 1 + G A rs148128563 271120 + 271100 271140 41 GATGGCGCTGACATCCCCAGGGAGCTGGTGGTAGGCATCTA GATGGCGCTGACATCCCCAAGGAGCTGGTGGTAGGCATCTA < 41bp 0.581034227728846 0.782837650429292 NA NA prediction 0.403606845400892 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:271120 chr12:271119 nonsynonymous SNV 0.984 1 20 hm7G_associated_SNPs_36777 0 0 0 0 1 IQSEC3 chr12:271092 3'AG 271092 Downstream 28bp 33837 chr4 1348920 1348920 1 + G A rs116741007 1348921 + 1348901 1348941 41 GCAGCGCTTCACCCGCGTCGGGACCCACGGTGGATGTTTAA GCAGCGCTTCACCCGCGTCAGGACCCACGGTGGATGTTTAA < 41bp 0.565657103965208 0.767459276871122 NA NA prediction 0.403604345811828 Functional Gain - UVSSA ENSG00000163945 CDS Human protein_coding chr4:1348921 chr4:1348920 nonsynonymous SNV 0.007 4 20 hm7G_associated_SNPs_36780 0 0 1 0 1 UVSSA chr4:1348905 3'AG 1348905 Downstream 16bp 33838 chr17 8192690 8192690 1 + G A STAD 8192691 + 8192671 8192711 41 GCCGCTGTCAAGAAGCCTGGGTCCTCTCTGGCAAGCAGCAG GCCGCTGTCAAGAAGCCTGAGTCCTCTCTGGCAAGCAGCAG < 41bp 0.490440485473668 0.701802056469094 NA NA prediction 0.403604112938187 Functional Gain - RANGRF ENSG00000108961 CDS Human protein_coding chr17:8192691 chr17:8192690 stopgain 0.995 1 20 hm7G_associated_SNPs_36781 0 0 1 0 1 RANGRF chr17:8192732 5'GT 8192732 Upstream 43bp 33839 chr7 73811456 73811456 1 + G A STAD 73811457 + 73811437 73811477 41 GGCCAATCGTCACTCCCCAGGGCCGGAGAGGGACCTGAGCC GGCCAATCGTCACTCCCCAAGGCCGGAGAGGGACCTGAGCC < 41bp 0.477722759685665 0.70179599557701 NA NA prediction 0.40359199115402 Functional Gain - CLIP2 ENSG00000106665 CDS Human protein_coding chr7:73811457 chr7:73811456 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_36784 0 0 1 0 1 CLIP2 chr7:73811404 3'AG 73811404 Downstream 53bp 33840 chr10 134996954 134996954 1 + G A rs11101620 134996955 + 134996935 134996975 41 CTCGAGGCGCTGCTGAGCCGGATGCAGGCGGAGGACCCCGG CTCGAGGCGCTGCTGAGCCAGATGCAGGCGGAGGACCCCGG < 41bp 0.539684121666192 0.741479982658918 NA NA prediction 0.403591721985451 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:134996955 chr10:134996954 nonsynonymous SNV 0.822 0 20 hm7G_associated_SNPs_36785 0 0 0 0 1 KNDC1 chr10:134996994 5'GT 134996994 Upstream 41bp 33841 chr5 79378360 79378360 1 - G A CESC 79378359 - 79378339 79378379 41 ATGCACATTACCATTGCAGCGATACTTGAGGTTGGACCAGA ATGCACATTACCATTGCAGTGATACTTGAGGTTGGACCAGA < 41bp 0.524063695026031 0.725858460519819 NA NA prediction 0.403589530987576 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79378359 chr5:79378360 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_36787 0 0 0 0 1 THBS4 chr5:79378360 3'AG 79378360 Downstream 1bp 33842 chr17 78219973 78219973 1 + C T UCEC 78219974 + 78219954 78219994 41 ACAGCCGTGAACGCTCAGTCGGGGGTGTGCACCCCGGCGGG ACAGCCGTGAACGCTCAGTTGGGGGTGTGCACCCCGGCGGG < 41bp 0.534906598636531 0.736700801068448 NA NA prediction 0.403588404863833 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219974 chr17:78219973 nonsynonymous SNV 0.594 4 20 hm7G_associated_SNPs_36788 0 0 1 0 2 SLC26A11 chr17:78219953 3'AG 78219953 Downstream 21bp 33843 chr17 78219973 78219973 1 + C T UCEC 78219974 + 78219954 78219994 41 ACAGCCGTGAACGCTCAGTCGGGGGTGTGCACCCCGGCGGG ACAGCCGTGAACGCTCAGTTGGGGGTGTGCACCCCGGCGGG < 41bp 0.534906598636531 0.736700801068448 NA NA prediction 0.403588404863833 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78219974 chr17:78219973 nonsynonymous SNV 0.594 4 20 hm7G_associated_SNPs_36788 0 0 1 0 2 SLC26A11 chr17:78220008 5'GT 78220008 Upstream 36bp 33844 chr1 210012319 210012319 1 + C T rs114160793 210012320 + 210012300 210012340 41 AGCTCTTCATCAGCCTCCTCGAGGGTGACAGCAAGAAGAAA AGCTCTTCATCAGCCTCCTTGAGGGTGACAGCAAGAAGAAA < 41bp 0.535145351351759 0.736938807720195 NA NA prediction 0.403586912736871 Functional Gain - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012320 chr1:210012319 synonymous SNV . 0 20 hm7G_associated_SNPs_36789 0 0 1 0 1 DIEXF chr1:210012254 3'AG 210012254 Downstream 66bp 33845 chr5 177573248 177573248 1 + G T rs73804715 177573249 + 177573229 177573269 41 GGGACGCCTGTTCCCTGCTGGGGCTTTCTGTGGAGTCCCCC GGGACGCCTGTTCCCTGCTTGGGCTTTCTGTGGAGTCCCCC < 41bp 0.340803853503697 0.701793338126841 NA NA prediction 0.403586676253683 Functional Gain - RMND5B ENSG00000145916 CDS Human protein_coding chr5:177573249 chr5:177573248 synonymous SNV . 0 20 hm7G_associated_SNPs_36790 0 0 1 0 1 RMND5B chr5:177573280 5'GT 177573280 Upstream 33bp 33846 chr6 88126497 88126497 1 + C T SKCM 88126498 + 88126478 88126518 41 CATGATTGTTACTGGAATTCGTTTATTTAACAGAGACTGTG CATGATTGTTACTGGAATTTGTTTATTTAACAGAGACTGTG < 41bp 0.511990536438989 0.713783422003281 NA NA prediction 0.403585771128584 Functional Gain - CFAP206 ENSG00000213204;ENSG00000272514 CDS Human other chr6:88126498 chr6:88126497 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_36791 0 0 0 0 1 CFAP206 chr6:88126545 5'GT 88126545 Upstream 49bp 33847 chr9 139873509 139873509 1 + C T PAAD 139873510 + 139873490 139873530 41 TGGCTCCGGGAGAAGAAGGCGGCGTTGTCCATGTGCAAGTC TGGCTCCGGGAGAAGAAGGTGGCGTTGTCCATGTGCAAGTC < 41bp 0.520080656745913 0.721870558794772 NA NA prediction 0.403579804097718 Functional Gain - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139873510 chr9:139873509 nonsynonymous SNV 0.094 0 20 hm7G_associated_SNPs_36793 0 0 0 0 2 PTGDS chr9:139873445 3'AG 139873445 Downstream 65bp 33848 chr9 139873509 139873509 1 + C T PAAD 139873510 + 139873490 139873530 41 TGGCTCCGGGAGAAGAAGGCGGCGTTGTCCATGTGCAAGTC TGGCTCCGGGAGAAGAAGGTGGCGTTGTCCATGTGCAAGTC < 41bp 0.520080656745913 0.721870558794772 NA NA prediction 0.403579804097718 Functional Gain - PTGDS ENSG00000107317 CDS Human protein_coding chr9:139873510 chr9:139873509 nonsynonymous SNV 0.094 0 20 hm7G_associated_SNPs_36793 0 0 0 0 2 PTGDS chr9:139873584 5'GT 139873584 Upstream 76bp 33849 chr17 12893389 12893389 1 + C T READ 12893390 + 12893370 12893410 41 CCTCGATCCACATAGAGCTCGGGTCGACGCTCCGCCTGAGT CCTCGATCCACATAGAGCTTGGGTCGACGCTCCGCCTGAGT < 41bp 0.493632172392886 0.701789725499537 NA NA prediction 0.403579450999074 Functional Gain - ARHGAP44 ENSG00000006740 CDS Human protein_coding chr17:12893390 chr17:12893389 synonymous SNV . 0 20 hm7G_associated_SNPs_36794 0 0 0 0 1 ARHGAP44 chr17:12893349 3'AG 12893349 Downstream 41bp 33850 chr17 72350363 72350363 1 + C T BLCA 72350364 + 72350344 72350384 41 GGCCGCCCGGCGGCGCTCGCGGGCCCTGGGAACCGAGGGGC GGCCGCCCGGCGGCGCTCGTGGGCCCTGGGAACCGAGGGGC < 41bp 0.534360092359288 0.736149759806639 NA NA prediction 0.403579334894702 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72350364 chr17:72350363 nonsynonymous SNV 0.705 2 20 hm7G_associated_SNPs_36795 0 0 0 0 1 KIF19 chr17:72350301 3'AG 72350301 Downstream 63bp 33851 chr9 135759455 135759455 1 + C T CESC 135759456 + 135759436 135759476 41 GAACGCCCACGACAAGATCCGGCCCATCTCCAGCATTGGAC GAACGCCCACGACAAGATCTGGCCCATCTCCAGCATTGGAC < 41bp 0.546919083575176 0.748708292214505 NA NA prediction 0.403578417278659 Functional Gain - SPACA9 ENSG00000165698 CDS Human protein_coding chr9:135759456 chr9:135759455 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36796 0 0 0 0 1 SPACA9 chr9:135759478 5'GT 135759478 Upstream 24bp 33852 chr6 36990132 36990132 1 + C T SARC 36990133 + 36990113 36990153 41 GCGCCGTCGCCACCACTGCCGGGCCTGCGGCTATGTGAGTA GCGCCGTCGCCACCACTGCTGGGCCTGCGGCTATGTGAGTA < 41bp 0.53681906919839 0.738607230931262 NA NA prediction 0.403576323465745 Functional Gain - FGD2 ENSG00000146192 CDS Human protein_coding chr6:36990133 chr6:36990132 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_36797 0 0 0 0 1 FGD2 chr6:36990146 5'GT 36990146 Upstream 15bp 33853 chr1 27159097 27159097 1 + C T STAD 27159098 + 27159078 27159118 41 CCGCCCTGGAGAAACAGATCGGTGAGGTTTCTACTCCCAGC CCGCCCTGGAGAAACAGATTGGTGAGGTTTCTACTCCCAGC < 41bp 0.53102291745904 0.732810048620836 NA NA prediction 0.403574262323591 Functional Gain - ZDHHC18 ENSG00000204160 CDS Human protein_coding chr1:27159098 chr1:27159097 synonymous SNV . 0 20 hm7G_associated_SNPs_36798 0 0 1 0 1 ZDHHC18 chr1:27159098 5'GT 27159098 Upstream 2bp 33854 chr1 193181599 193181599 1 + G T COAD 193181600 + 193181580 193181620 41 ATGCAAAAGACCTTCTACAGGACCTGAAGTAAGTAATTTAT ATGCAAAAGACCTTCTACATGACCTGAAGTAAGTAATTTAT < 41bp 0.387021499773789 0.701780434532023 NA NA prediction 0.403560869064047 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193181600 chr1:193181599 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36805 0 0 1 0 2 CDC73 chr1:193181520 3'AG 193181520 Downstream 80bp 33855 chr1 193181599 193181599 1 + G T COAD 193181600 + 193181580 193181620 41 ATGCAAAAGACCTTCTACAGGACCTGAAGTAAGTAATTTAT ATGCAAAAGACCTTCTACATGACCTGAAGTAAGTAATTTAT < 41bp 0.387021499773789 0.701780434532023 NA NA prediction 0.403560869064047 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193181600 chr1:193181599 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36805 0 0 1 0 2 CDC73 chr1:193181607 5'GT 193181607 Upstream 9bp 33856 chr14 24545427 24545427 1 + C T PRAD 24545428 + 24545408 24545448 41 CCTGCACTGCCTCAGTCCCCGACAGCCCAACCACTACCTGC CCTGCACTGCCTCAGTCCCTGACAGCCCAACCACTACCTGC < 41bp 0.48826414482326 0.701779494282576 NA NA prediction 0.403558988565153 Functional Gain - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24545428 chr14:24545427 stopgain 0.988 1 20 hm7G_associated_SNPs_36807 0 0 0 0 2 CPNE6 chr14:24545358 3'AG 24545358 Downstream 70bp 33857 chr14 24545427 24545427 1 + C T PRAD 24545428 + 24545408 24545448 41 CCTGCACTGCCTCAGTCCCCGACAGCCCAACCACTACCTGC CCTGCACTGCCTCAGTCCCTGACAGCCCAACCACTACCTGC < 41bp 0.48826414482326 0.701779494282576 NA NA prediction 0.403558988565153 Functional Gain - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24545428 chr14:24545427 stopgain 0.988 1 20 hm7G_associated_SNPs_36807 0 0 0 0 2 CPNE6 chr14:24545491 5'GT 24545491 Upstream 65bp 33858 chr6 41533642 41533642 1 + G A STAD 41533643 + 41533623 41533663 41 CGGGCAGGGAAGTGACCACGGGTGCAGACAGCAATGGTGAG CGGGCAGGGAAGTGACCACAGGTGCAGACAGCAATGGTGAG < 41bp 0.576390256621687 0.778169225441553 NA NA prediction 0.403557937639732 Functional Gain - FOXP4 ENSG00000137166 CDS Human protein_coding chr6:41533643 chr6:41533642 synonymous SNV . 0 20 hm7G_associated_SNPs_36808 0 0 0 0 1 FOXP4 chr6:41533702 5'GT 41533702 Upstream 61bp 33859 chr12 72366363 72366363 1 + C T LUSC 72366364 + 72366344 72366384 41 AACTTGGGGTGTTGTATTCCGGGAGCTCTCCAAACTCTATC AACTTGGGGTGTTGTATTCTGGGAGCTCTCCAAACTCTATC < 41bp 0.487203888412347 0.70177831834343 NA NA prediction 0.40355663668686 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72366364 chr12:72366363 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_36809 0 0 0 0 1 TPH2 chr12:72366299 3'AG 72366299 Downstream 65bp 33860 chr17 43314959 43314959 1 + C T BLCA 43314960 + 43314940 43314980 41 GGCGGCCGTGTGCTTGGTGCGGGGAGGACATGACATCATCC GGCGGCCGTGTGCTTGGTGTGGGGAGGACATGACATCATCC < 41bp 0.545948614948769 0.747726478723789 NA NA prediction 0.403555727550041 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43314960 chr17:43314959 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_36810 0 0 0 0 2 FMNL1 chr17:43314913 3'AG 43314913 Downstream 47bp 33861 chr17 43314959 43314959 1 + C T BLCA 43314960 + 43314940 43314980 41 GGCGGCCGTGTGCTTGGTGCGGGGAGGACATGACATCATCC GGCGGCCGTGTGCTTGGTGTGGGGAGGACATGACATCATCC < 41bp 0.545948614948769 0.747726478723789 NA NA prediction 0.403555727550041 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43314960 chr17:43314959 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_36810 0 0 0 0 2 FMNL1 chr17:43315006 5'GT 43315006 Upstream 48bp 33862 chr15 73541532 73541532 1 + G T LIHC 73541533 + 73541513 73541553 41 ATTGTACTACATGGAAAAGGGGACTGATAAAGAACAGGTAT ATTGTACTACATGGAAAAGTGGACTGATAAAGAACAGGTAT < 41bp 0.366669358192965 0.701777649774106 NA NA prediction 0.403555299548213 Functional Gain - NEO1 ENSG00000067141 CDS Human protein_coding chr15:73541533 chr15:73541532 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_36812 0 0 1 0 1 NEO1 chr15:73541549 5'GT 73541549 Upstream 18bp 33863 chr9 125143816 125143816 1 + G A ESCA 125143817 + 125143797 125143837 41 TGGGTCCTGGCTTCACCAAGGCCTTGGGCCATGGGGTGAGT TGGGTCCTGGCTTCACCAAAGCCTTGGGCCATGGGGTGAGT < 41bp 0.5634866650609 0.765262459311427 NA NA prediction 0.403551588501054 Functional Gain - PTGS1 ENSG00000095303 CDS Human protein_coding chr9:125143817 chr9:125143816 synonymous SNV . 0 20 hm7G_associated_SNPs_36814 0 0 0 0 1 PTGS1 chr9:125143831 5'GT 125143831 Upstream 16bp 33864 chr19 42085956 42085956 1 + C T UCEC 42085957 + 42085937 42085977 41 CAGTCAGCTCCAACAGGAGCGACCCCCTCAAGCTGACTGTA CAGTCAGCTCCAACAGGAGTGACCCCCTCAAGCTGACTGTA < 41bp 0.529493291735648 0.731265266389215 NA NA prediction 0.403543949307134 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42085957 chr19:42085956 synonymous SNV . 0 20 hm7G_associated_SNPs_36818 0 0 0 0 1 CEACAM21 chr19:42085981 5'GT 42085981 Upstream 26bp 33865 chr9 96060196 96060196 1 + C T UCEC 96060197 + 96060177 96060217 41 GGAGATCGAAGCTCTGTACCGCCGCCTGGGCAAGCCACTGC GGAGATCGAAGCTCTGTACTGCCGCCTGGGCAAGCCACTGC < 41bp 0.524076007331885 0.725847315790591 NA NA prediction 0.403542616917411 Functional Gain - WNK2 ENSG00000165238 CDS Human protein_coding chr9:96060197 chr9:96060196 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_36819 0 0 1 0 1 WNK2 chr9:96060135 3'AG 96060135 Downstream 62bp 33866 chr20 58349360 58349360 1 + C T COAD 58349361 + 58349341 58349381 41 GATGTCCGTCTGTCGAGAACGTCCAGCGTGGAGCGGGGCAA GATGTCCGTCTGTCGAGAATGTCCAGCGTGGAGCGGGGCAA < 41bp 0.526173145147255 0.727943609000342 NA NA prediction 0.403540927706175 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58349361 chr20:58349360 nonsynonymous SNV 0.106 3 20 hm7G_associated_SNPs_36821 0 0 0 0 1 PHACTR3 chr20:58349298 3'AG 58349298 Downstream 63bp 33867 chr11 122650402 122650402 1 + C T rs149002781 122650403 + 122650383 122650423 41 CAGAGGCTGCATCCAAAACCGGTGAGCAAACAGCTGCCAGG CAGAGGCTGCATCCAAAACTGGTGAGCAAACAGCTGCCAGG < 41bp 0.54651927548651 0.748289613557124 NA NA prediction 0.403540676141229 Functional Gain - UBASH3B ENSG00000154127 CDS Human protein_coding chr11:122650403 chr11:122650402 synonymous SNV . 0 20 hm7G_associated_SNPs_36822 0 0 0 0 1 UBASH3B chr11:122650403 5'GT 122650403 Upstream 2bp 33868 chr1 41475884 41475884 1 + C T rs144289383 41475885 + 41475865 41475905 41 CCCCTGACTCTGAAATCACCGAACTGAAGTTTCCATCAATA CCCCTGACTCTGAAATCACTGAACTGAAGTTTCCATCAATA < 41bp 0.512011630116745 0.713781898618909 NA NA prediction 0.403540537004327 Functional Gain - CTPS1 ENSG00000171793 CDS Human protein_coding chr1:41475885 chr1:41475884 synonymous SNV . 0 20 hm7G_associated_SNPs_36823 0 0 1 0 1 CTPS1 chr1:41475833 3'AG 41475833 Downstream 52bp 33869 chr4 88979162 88979162 1 + C T UCEC 88979163 + 88979143 88979183 41 AATTCCGTATCATTTTGGGCGATATCAACTTTGCAGAGATT AATTCCGTATCATTTTGGGTGATATCAACTTTGCAGAGATT < 41bp 0.524146585447946 0.725916687785939 NA NA prediction 0.403540204675986 Functional Gain - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88979163 chr4:88979162 synonymous SNV . 0 20 hm7G_associated_SNPs_36824 0 0 1 0 2 PKD2 chr4:88979135 3'AG 88979135 Downstream 28bp 33870 chr4 88979162 88979162 1 + C T UCEC 88979163 + 88979143 88979183 41 AATTCCGTATCATTTTGGGCGATATCAACTTTGCAGAGATT AATTCCGTATCATTTTGGGTGATATCAACTTTGCAGAGATT < 41bp 0.524146585447946 0.725916687785939 NA NA prediction 0.403540204675986 Functional Gain - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88979163 chr4:88979162 synonymous SNV . 0 20 hm7G_associated_SNPs_36824 0 0 1 0 2 PKD2 chr4:88979255 5'GT 88979255 Upstream 94bp 33871 chr4 4864519 4864519 1 + G A rs149960650 4864520 + 4864500 4864540 41 CCGCGCAGCTGCTGGCGCTGGAGCGCAAGTTCCGCCAGAAG CCGCGCAGCTGCTGGCGCTAGAGCGCAAGTTCCGCCAGAAG < 41bp 0.555529629337217 0.757297498026739 NA NA prediction 0.403535737379044 Functional Gain - MSX1 ENSG00000163132 CDS Human protein_coding chr4:4864520 chr4:4864519 synonymous SNV . 0 20 hm7G_associated_SNPs_36825 0 0 0 0 1 MSX1 chr4:4864428 3'AG 4864428 Downstream 92bp 33872 chr18 19763002 19763002 1 + G A SKCM 19763003 + 19762983 19763023 41 AACACAACCTACAGCCTCAGGGGTAAGTATTAAAACAGCAT AACACAACCTACAGCCTCAAGGGTAAGTATTAAAACAGCAT < 41bp 0.50759849556621 0.709366246579149 NA NA prediction 0.403535502025877 Functional Gain - GATA6 ENSG00000141448 CDS Human protein_coding chr18:19763003 chr18:19763002 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36826 0 0 0 0 1 GATA6 chr18:19763004 5'GT 19763004 Upstream 3bp 33873 chr10 6262798 6262798 1 + C T CESC 6262799 + 6262779 6262819 41 TCCAGGGCCGCATCGGGGGCGACTCAGGCCTGTCCAGCCGG TCCAGGGCCGCATCGGGGGTGACTCAGGCCTGTCCAGCCGG < 41bp 0.524035838761245 0.725799853995585 NA NA prediction 0.403528030468679 Functional Gain - PFKFB3 ENSG00000170525 CDS Human protein_coding chr10:6262799 chr10:6262798 synonymous SNV . 0 20 hm7G_associated_SNPs_36830 0 0 1 0 1 PFKFB3 chr10:6262828 5'GT 6262828 Upstream 31bp 33874 chr1 36025983 36025983 1 + C T UCEC 36025984 + 36025964 36026004 41 AAACTCGGCGGCGGATCTTCGATGCTGTCGGCTTCACCTTC AAACTCGGCGGCGGATCTTTGATGCTGTCGGCTTCACCTTC < 41bp 0.497268033791149 0.701761877138062 NA NA prediction 0.403523754276123 Functional Gain - NCDN ENSG00000020129 CDS Human protein_coding chr1:36025984 chr1:36025983 synonymous SNV . 0 20 hm7G_associated_SNPs_36831 0 0 1 0 1 NCDN chr1:36025927 3'AG 36025927 Downstream 57bp 33875 chr19 41060262 41060262 1 + C T UCEC 41060263 + 41060243 41060283 41 AGGTGGAGCAGTACTACTTCGACGTGGCTGAGGTGGAGGCG AGGTGGAGCAGTACTACTTTGACGTGGCTGAGGTGGAGGCG < 41bp 0.528664106491601 0.730421917651102 NA NA prediction 0.403515622319002 Functional Gain - SPTBN4 ENSG00000160460 CDS Human protein_coding chr19:41060263 chr19:41060262 synonymous SNV . 0 20 hm7G_associated_SNPs_36833 0 0 0 0 1 SPTBN4 chr19:41060331 5'GT 41060331 Upstream 70bp 33876 chr17 61557822 61557822 1 + C T rs4302 61557823 + 61557803 61557843 41 TCCATGCCTTCGTCCGCCGCGCACTGCATCGCCGATACGGA TCCATGCCTTCGTCCGCCGTGCACTGCATCGCCGATACGGA < 41bp 0.488166019001491 0.701755767923615 NA NA prediction 0.403511535847229 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61557823 chr17:61557822 synonymous SNV . 0 20 hm7G_associated_SNPs_36835 0 0 0 0 1 ACE chr17:61557889 5'GT 61557889 Upstream 68bp 33877 chr20 61386160 61386160 1 + G A UCEC 61386161 + 61386141 61386181 41 GGGCCAAGTGTGCACGGTCGGGGGCGAGCACAGCACATTCA GGGCCAAGTGTGCACGGTCAGGGGCGAGCACAGCACATTCA < 41bp 0.560562725648394 0.762317238227317 NA NA prediction 0.403509025157847 Functional Gain - NTSR1 ENSG00000101188 CDS Human protein_coding chr20:61386161 chr20:61386160 nonsynonymous SNV 0.005 1 20 hm7G_associated_SNPs_36836 0 0 0 0 1 NTSR1 chr20:61386238 5'GT 61386238 Upstream 79bp 33878 chr16 50827515 50827515 1 + C T UCEC 50827516 + 50827496 50827536 41 ATGAGTGTAGAGAATGCTACGACGATCCGGACATCTCAGCT ATGAGTGTAGAGAATGCTATGACGATCCGGACATCTCAGCT < 41bp 0.493456063739873 0.701753299883486 NA NA prediction 0.403506599766973 Functional Gain - CYLD ENSG00000083799 CDS Human protein_coding chr16:50827516 chr16:50827515 synonymous SNV . 0 20 hm7G_associated_SNPs_36837 0 0 1 0 2 CYLD chr16:50827457 3'AG 50827457 Downstream 59bp 33879 chr16 50827515 50827515 1 + C T UCEC 50827516 + 50827496 50827536 41 ATGAGTGTAGAGAATGCTACGACGATCCGGACATCTCAGCT ATGAGTGTAGAGAATGCTATGACGATCCGGACATCTCAGCT < 41bp 0.493456063739873 0.701753299883486 NA NA prediction 0.403506599766973 Functional Gain - CYLD ENSG00000083799 CDS Human protein_coding chr16:50827516 chr16:50827515 synonymous SNV . 0 20 hm7G_associated_SNPs_36837 0 0 1 0 2 CYLD chr16:50827575 5'GT 50827575 Upstream 61bp 33880 chr2 238662097 238662097 1 + G T SARC 238662098 + 238662078 238662118 41 GAACAGCTGGCTGAATCTAGGCGGCAGTACGAAGAGAAAAA GAACAGCTGGCTGAATCTATGCGGCAGTACGAAGAGAAAAA < 41bp 0.36932870566175 0.701751456304709 NA NA prediction 0.403502912609418 Functional Gain - LRRFIP1 ENSG00000124831 CDS Human protein_coding chr2:238662098 chr2:238662097 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_36838 0 0 1 0 1 LRRFIP1 chr2:238662122 5'GT 238662122 Upstream 26bp 33881 chr4 7725514 7725514 1 + C T rs527314535 7725515 + 7725495 7725535 41 ACTGACCGGGGAGCCCATCCGGCACCGCTACGAGAGCCCCG ACTGACCGGGGAGCCCATCTGGCACCGCTACGAGAGCCCCG < 41bp 0.510932123353281 0.712683346378357 NA NA prediction 0.403502446050152 Functional Gain - SORCS2 ENSG00000184985 CDS Human protein_coding chr4:7725515 chr4:7725514 nonsynonymous SNV 0.822 2 20 hm7G_associated_SNPs_36839 0 0 0 0 1 SORCS2 chr4:7725610 5'GT 7725610 Upstream 97bp 33882 chrX 153699622 153699622 1 + C T COAD 153699623 + 153699603 153699643 41 CCTCCAACAAACTGCTCTACGCCAAGGACATCCCCAACTAC CCTCCAACAAACTGCTCTATGCCAAGGACATCCCCAACTAC < 41bp 0.513227470189088 0.714975930486538 NA NA prediction 0.403496920594901 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153699623 chrX:153699622 synonymous SNV . 0 20 hm7G_associated_SNPs_36840 0 0 1 0 1 PLXNA3 chrX:153699660 5'GT 153699660 Upstream 39bp 33883 chr21 38850513 38850513 1 + C T UCEC 38850514 + 38850494 38850534 41 TATTGTCATGTTACAGAGGCGGATGCCCCAAACCTTCCGTG TATTGTCATGTTACAGAGGTGGATGCCCCAAACCTTCCGTG < 41bp 0.549541513883863 0.751289813821882 NA NA prediction 0.40349659987604 Functional Gain - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38850514 chr21:38850513 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36841 0 0 1 0 3 DYRK1A chr21:38850483 3'AG 38850483 Downstream 31bp 33884 chr21 38850513 38850513 1 + C T UCEC 38850514 + 38850494 38850534 41 TATTGTCATGTTACAGAGGCGGATGCCCCAAACCTTCCGTG TATTGTCATGTTACAGAGGTGGATGCCCCAAACCTTCCGTG < 41bp 0.549541513883863 0.751289813821882 NA NA prediction 0.40349659987604 Functional Gain - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38850514 chr21:38850513 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36841 0 0 1 0 3 DYRK1A chr21:38850510 3'AG 38850510 Downstream 4bp 33885 chr21 38850513 38850513 1 + C T UCEC 38850514 + 38850494 38850534 41 TATTGTCATGTTACAGAGGCGGATGCCCCAAACCTTCCGTG TATTGTCATGTTACAGAGGTGGATGCCCCAAACCTTCCGTG < 41bp 0.549541513883863 0.751289813821882 NA NA prediction 0.40349659987604 Functional Gain - DYRK1A ENSG00000157540 CDS Human protein_coding chr21:38850514 chr21:38850513 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36841 0 0 1 0 3 DYRK1A chr21:38850602 5'GT 38850602 Upstream 90bp 33886 chr3 15045440 15045440 1 + C T CESC 15045441 + 15045421 15045461 41 GATGACCAGCCCCTCCCCACGCATCCAGATAATCTCCACCG GATGACCAGCCCCTCCCCATGCATCCAGATAATCTCCACCG < 41bp 0.548804826553585 0.750551002159872 NA NA prediction 0.403492351212573 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15045441 chr3:15045440 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_36845 0 0 1 0 2 NR2C2 chr3:15045383 3'AG 15045383 Downstream 58bp 33887 chr3 15045440 15045440 1 + C T CESC 15045441 + 15045421 15045461 41 GATGACCAGCCCCTCCCCACGCATCCAGATAATCTCCACCG GATGACCAGCCCCTCCCCATGCATCCAGATAATCTCCACCG < 41bp 0.548804826553585 0.750551002159872 NA NA prediction 0.403492351212573 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15045441 chr3:15045440 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_36845 0 0 1 0 2 NR2C2 chr3:15045493 5'GT 15045493 Upstream 54bp 33888 chr11 2790114 2790114 1 + C T UCEC 2790115 + 2790095 2790135 41 CACCATTAAGGTCATTCGACGCATGCAGTACTTTGTGGCCA CACCATTAAGGTCATTCGATGCATGCAGTACTTTGTGGCCA < 41bp 0.521119288814149 0.72286518388719 NA NA prediction 0.403491790146081 Functional Gain - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2790115 chr11:2790114 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_36846 2 0 0 0 2 KCNQ1 chr11:2790074 3'AG 2790074 Downstream 41bp 33889 chr11 2790114 2790114 1 + C T UCEC 2790115 + 2790095 2790135 41 CACCATTAAGGTCATTCGACGCATGCAGTACTTTGTGGCCA CACCATTAAGGTCATTCGATGCATGCAGTACTTTGTGGCCA < 41bp 0.521119288814149 0.72286518388719 NA NA prediction 0.403491790146081 Functional Gain - KCNQ1 ENSG00000053918 CDS Human protein_coding chr11:2790115 chr11:2790114 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_36846 2 0 0 0 2 KCNQ1 chr11:2790149 5'GT 2790149 Upstream 36bp 33890 chr5 148743625 148743625 1 + G T LUAD 148743626 + 148743606 148743646 41 GCACCGGCGCGAGGTGGTGGGCAGGAGCGCCATCTTCGGCG GCACCGGCGCGAGGTGGTGTGCAGGAGCGCCATCTTCGGCG < 41bp 0.591364143914285 0.793109291245421 NA NA prediction 0.403490294662271 Functional Gain - PCYOX1L ENSG00000145882 CDS Human protein_coding chr5:148743626 chr5:148743625 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_36848 0 0 0 0 1 PCYOX1L chr5:148743599 3'AG 148743599 Downstream 27bp 33891 chr2 102625093 102625093 1 + C T UCEC 102625094 + 102625074 102625114 41 GCCTTCACCCTTCAGCCTGCGGCACACACAGGTTAGAAGTA GCCTTCACCCTTCAGCCTGTGGCACACACAGGTTAGAAGTA < 41bp 0.50501065454783 0.706753497201837 NA NA prediction 0.403485685308016 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102625094 chr2:102625093 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36849 0 0 0 0 1 IL1R2 chr2:102625104 5'GT 102625104 Upstream 12bp 33892 chr16 48311250 48311250 1 + C T HNSC 48311251 + 48311231 48311271 41 GCTACTTGCTTTCTCTAGGCGCACCTATGTTGGCAGCATGC GCTACTTGCTTTCTCTAGGTGCACCTATGTTGGCAGCATGC < 41bp 0.535421657246589 0.737162543333108 NA NA prediction 0.403481772173037 Functional Gain - LONP2 ENSG00000102910 CDS Human protein_coding chr16:48311251 chr16:48311250 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_36850 0 0 1 0 1 LONP2 chr16:48311249 3'AG 48311249 Downstream 2bp 33893 chr19 34818947 34818947 1 + C T COAD 34818948 + 34818928 34818968 41 GGGCGGAGGCAGACACCCCCGCAGCCCATGCAGTGTGAGCT GGGCGGAGGCAGACACCCCTGCAGCCCATGCAGTGTGAGCT < 41bp 0.563416208923564 0.765156546526668 NA NA prediction 0.403480675206207 Functional Gain - KIAA0355 ENSG00000166398 CDS Human protein_coding chr19:34818948 chr19:34818947 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_36852 0 0 1 0 1 KIAA0355 chr19:34818895 3'AG 34818895 Downstream 53bp 33894 chr2 56599555 56599555 1 + G A COAD 56599556 + 56599536 56599576 41 TGGGGGTCCAGAGCCCGGCGGGTCTTGCAGTGGTGGCAAGG TGGGGGTCCAGAGCCCGGCAGGTCTTGCAGTGGTGGCAAGG < 41bp 0.531407797904244 0.733148121724673 NA NA prediction 0.403480647640857 Functional Gain - CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56599556 chr2:56599555 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36853 0 0 0 0 2 CCDC85A chr2:56599479 3'AG 56599479 Downstream 77bp 33895 chr2 56599555 56599555 1 + G A COAD 56599556 + 56599536 56599576 41 TGGGGGTCCAGAGCCCGGCGGGTCTTGCAGTGGTGGCAAGG TGGGGGTCCAGAGCCCGGCAGGTCTTGCAGTGGTGGCAAGG < 41bp 0.531407797904244 0.733148121724673 NA NA prediction 0.403480647640857 Functional Gain - CCDC85A ENSG00000055813 CDS Human protein_coding chr2:56599556 chr2:56599555 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36853 0 0 0 0 2 CCDC85A chr2:56599613 5'GT 56599613 Upstream 59bp 33896 chr19 11473296 11473296 1 + C T rs118107242 11473297 + 11473277 11473317 41 TGGGCGTGGTCCGCGTGGCCGAGTACCGAAACCACTGGTCG TGGGCGTGGTCCGCGTGGCTGAGTACCGAAACCACTGGTCG < 41bp 0.533904034794072 0.735642271392512 NA NA prediction 0.40347647319688 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11473297 chr19:11473296 synonymous SNV . 0 20 hm7G_associated_SNPs_36854 0 0 1 0 1 PLPPR2 chr19:11473365 5'GT 11473365 Upstream 70bp 33897 chr15 91483658 91483658 1 + G A OV 91483659 + 91483639 91483679 41 AGACTGACCTCATGCTGGCGGCTCTGCGTACGCTGGTTGGC AGACTGACCTCATGCTGGCAGCTCTGCGTACGCTGGTTGGC < 41bp 0.564092580523325 0.765830799082547 NA NA prediction 0.403476437118444 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91483659 chr15:91483658 synonymous SNV . 0 20 hm7G_associated_SNPs_36855 0 0 1 0 1 UNC45A chr15:91483703 5'GT 91483703 Upstream 46bp 33898 chr11 65178764 65178764 1 + G A GBM 65178765 + 65178745 65178785 41 ACCACATCCTTCTTCAGCCGGCAGCTGTCCTTGGGCCAGGG ACCACATCCTTCTTCAGCCAGCAGCTGTCCTTGGGCCAGGG < 41bp 0.535680962998117 0.737417412497746 NA NA prediction 0.403472898999259 Functional Gain - FRMD8 ENSG00000126391 CDS Human protein_coding chr11:65178765 chr11:65178764 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_36857 0 0 1 0 1 FRMD8 chr11:65178713 3'AG 65178713 Downstream 52bp 33899 chr12 3126663 3126663 1 + C T UCEC 3126664 + 3126644 3126684 41 CAGTAGCATGGCCCTCGCCCGGGGCCCCGGCCGCCCAGCAG CAGTAGCATGGCCCTCGCCTGGGGCCCCGGCCGCCCAGCAG < 41bp 0.554889893808211 0.756623071112942 NA NA prediction 0.403466354609463 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3126664 chr12:3126663 nonsynonymous SNV 0.882 2 20 hm7G_associated_SNPs_36860 0 0 0 0 2 TEAD4 chr12:3126564 3'AG 3126564 Downstream 100bp 33900 chr12 3126663 3126663 1 + C T UCEC 3126664 + 3126644 3126684 41 CAGTAGCATGGCCCTCGCCCGGGGCCCCGGCCGCCCAGCAG CAGTAGCATGGCCCTCGCCTGGGGCCCCGGCCGCCCAGCAG < 41bp 0.554889893808211 0.756623071112942 NA NA prediction 0.403466354609463 Functional Gain - TEAD4 ENSG00000197905 CDS Human protein_coding chr12:3126664 chr12:3126663 nonsynonymous SNV 0.882 2 20 hm7G_associated_SNPs_36860 0 0 0 0 2 TEAD4 chr12:3126692 5'GT 3126692 Upstream 30bp 33901 chr11 63672294 63672294 1 + C T UCEC 63672295 + 63672275 63672315 41 TCCCTGTTGCCTCCCCATCCGCCCACAACATCAGCAGCAGT TCCCTGTTGCCTCCCCATCTGCCCACAACATCAGCAGCAGT < 41bp 0.550188763290076 0.751921829869331 NA NA prediction 0.40346613315851 Functional Gain - MARK2 ENSG00000072518 CDS Human protein_coding chr11:63672295 chr11:63672294 synonymous SNV . 0 20 hm7G_associated_SNPs_36861 0 0 1 0 1 MARK2 chr11:63672258 3'AG 63672258 Downstream 37bp 33902 chr16 66592219 66592219 1 + C T UCEC 66592220 + 66592200 66592240 41 ATATGTACTCAGACTTGATCGATTAATGAAGTGGTTATTTT ATATGTACTCAGACTTGATTGATTAATGAAGTGGTTATTTT < 41bp 0.523214359888039 0.72494715239532 NA NA prediction 0.403465585014563 Functional Gain - CKLF;CKLF-CMTM1 ENSG00000217555 CDS Human protein_coding chr16:66592220 chr16:66592219 stopgain 0.789 0 20 hm7G_associated_SNPs_36862 0 0 1 0 1 CKLF;CKLF-CMTM1 chr16:66592251 5'GT 66592251 Upstream 33bp 33903 chr4 3419135 3419135 1 + C T UCEC 3419136 + 3419116 3419156 41 TAAGTGGAAAATCAAAATCCGGCCGATCCCTGAATGAAGAG TAAGTGGAAAATCAAAATCTGGCCGATCCCTGAATGAAGAG < 41bp 0.492735789625691 0.701728495145919 NA NA prediction 0.403456990291839 Functional Gain - RGS12 ENSG00000159788 CDS Human protein_coding chr4:3419136 chr4:3419135 synonymous SNV . 0 20 hm7G_associated_SNPs_36864 0 0 1 0 1 RGS12 chr4:3419115 3'AG 3419115 Downstream 21bp 33904 chr12 122674734 122674734 1 + G A SKCM 122674735 + 122674715 122674755 41 TGACAGACCTGCAGAGCATGGTCACCAGCCTGAGGACCCTC TGACAGACCTGCAGAGCATAGTCACCAGCCTGAGGACCCTC < 41bp 0.474026326151864 0.701726843102573 NA NA prediction 0.403453686205145 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122674735 chr12:122674734 nonsynonymous SNV 0.405 0 20 hm7G_associated_SNPs_36865 0 0 0 0 1 LRRC43 chr12:122674677 3'AG 122674677 Downstream 58bp 33905 chr19 7614987 7614987 1 + C T SKCM 7614988 + 7614968 7615008 41 TCCTGCGGATCTCCAAGTCCGACTTCTATGAGTATGACAGC TCCTGCGGATCTCCAAGTCTGACTTCTATGAGTATGACAGC < 41bp 0.514530444710934 0.716256619042154 NA NA prediction 0.40345234866244 Functional Gain - PNPLA6 ENSG00000032444 CDS Human protein_coding chr19:7614988 chr19:7614987 synonymous SNV . 0 20 hm7G_associated_SNPs_36867 0 0 0 0 1 PNPLA6 chr19:7614998 5'GT 7614998 Upstream 12bp 33906 chr11 76830131 76830131 1 + G A rs137893074 76830132 + 76830112 76830152 41 CTGATCTGCATCCAGCAGCGGCCAAAGCGGTCTACGCGCCG CTGATCTGCATCCAGCAGCAGCCAAAGCGGTCTACGCGCCG < 41bp 0.545802351018671 0.7475274110887 NA NA prediction 0.403450120140057 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76830132 chr11:76830131 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_36871 0 0 0 0 2 CAPN5 chr11:76830076 3'AG 76830076 Downstream 56bp 33907 chr11 76830131 76830131 1 + G A rs137893074 76830132 + 76830112 76830152 41 CTGATCTGCATCCAGCAGCGGCCAAAGCGGTCTACGCGCCG CTGATCTGCATCCAGCAGCAGCCAAAGCGGTCTACGCGCCG < 41bp 0.545802351018671 0.7475274110887 NA NA prediction 0.403450120140057 Functional Gain - CAPN5 ENSG00000149260 CDS Human protein_coding chr11:76830132 chr11:76830131 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_36871 0 0 0 0 2 CAPN5 chr11:76830198 5'GT 76830198 Upstream 68bp 33908 chr4 48993490 48993490 1 + G A LUAD 48993491 + 48993471 48993511 41 GCAGCATAGCCTCCTTCCAGGCTCCAAATGCCAAACTTCGA GCAGCATAGCCTCCTTCCAAGCTCCAAATGCCAAACTTCGA < 41bp 0.538903298516102 0.74062688884777 NA NA prediction 0.403447180663335 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:48993491 chr4:48993490 synonymous SNV . 0 20 hm7G_associated_SNPs_36872 0 0 0 0 1 CWH43 chr4:48993471 3'AG 48993471 Downstream 20bp 33909 chr16 30522267 30522267 1 + C T rs150714646 30522268 + 30522248 30522288 41 GGGACTCGGTTGAATTGCACGCCAATGTGACCTGGTGAGCA GGGACTCGGTTGAATTGCATGCCAATGTGACCTGGTGAGCA < 41bp 0.544883705717641 0.746606914791298 NA NA prediction 0.403446418147313 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522268 chr16:30522267 synonymous SNV . 0 20 hm7G_associated_SNPs_36873 0 0 0 0 3 ITGAL chr16:30522202 3'AG 30522202 Downstream 66bp 33910 chr16 30522267 30522267 1 + C T rs150714646 30522268 + 30522248 30522288 41 GGGACTCGGTTGAATTGCACGCCAATGTGACCTGGTGAGCA GGGACTCGGTTGAATTGCATGCCAATGTGACCTGGTGAGCA < 41bp 0.544883705717641 0.746606914791298 NA NA prediction 0.403446418147313 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522268 chr16:30522267 synonymous SNV . 0 20 hm7G_associated_SNPs_36873 0 0 0 0 3 ITGAL chr16:30522214 3'AG 30522214 Downstream 54bp 33911 chr16 30522267 30522267 1 + C T rs150714646 30522268 + 30522248 30522288 41 GGGACTCGGTTGAATTGCACGCCAATGTGACCTGGTGAGCA GGGACTCGGTTGAATTGCATGCCAATGTGACCTGGTGAGCA < 41bp 0.544883705717641 0.746606914791298 NA NA prediction 0.403446418147313 Functional Gain - ITGAL ENSG00000005844 CDS Human protein_coding chr16:30522268 chr16:30522267 synonymous SNV . 0 20 hm7G_associated_SNPs_36873 0 0 0 0 3 ITGAL chr16:30522281 5'GT 30522281 Upstream 15bp 33912 chr16 66643842 66643842 1 + C T rs539526091 66643843 + 66643823 66643863 41 ATTTCTACCTGATCTTTAACGACGTGGCCAAATTCCTCAAA ATTTCTACCTGATCTTTAATGACGTGGCCAAATTCCTCAAA < 41bp 0.538480236830357 0.740201392170924 NA NA prediction 0.403442310681133 Functional Gain - CMTM3 ENSG00000140931 CDS Human protein_coding chr16:66643843 chr16:66643842 synonymous SNV . 0 20 hm7G_associated_SNPs_36874 0 0 1 0 2 CMTM3 chr16:66643786 3'AG 66643786 Downstream 57bp 33913 chr16 66643842 66643842 1 + C T rs539526091 66643843 + 66643823 66643863 41 ATTTCTACCTGATCTTTAACGACGTGGCCAAATTCCTCAAA ATTTCTACCTGATCTTTAATGACGTGGCCAAATTCCTCAAA < 41bp 0.538480236830357 0.740201392170924 NA NA prediction 0.403442310681133 Functional Gain - CMTM3 ENSG00000140931 CDS Human protein_coding chr16:66643843 chr16:66643842 synonymous SNV . 0 20 hm7G_associated_SNPs_36874 0 0 1 0 2 CMTM3 chr16:66643906 5'GT 66643906 Upstream 65bp 33914 chr11 121016793 121016793 1 + C T CESC 121016794 + 121016774 121016814 41 TGCCAGACTCAGGGGATTACGGTGACTGGCTGGAGGAATTA TGCCAGACTCAGGGGATTATGGTGACTGGCTGGAGGAATTA < 41bp 0.540911122209261 0.74263206429088 NA NA prediction 0.403441884163238 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121016794 chr11:121016793 nonsynonymous SNV 0.180 0 20 hm7G_associated_SNPs_36876 0 0 0 0 1 TECTA chr11:121016825 5'GT 121016825 Upstream 33bp 33915 chr11 67810131 67810131 1 + G A COAD 67810132 + 67810112 67810152 41 TTCCTGCAGGAGGAGGTGCGGCGGGCTGGGCTGGTCCTGCC TTCCTGCAGGAGGAGGTGCAGCGGGCTGGGCTGGTCCTGCC < 41bp 0.57773356383903 0.779454181108026 NA NA prediction 0.403441234537992 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67810132 chr11:67810131 nonsynonymous SNV 0.525 1 20 hm7G_associated_SNPs_36877 0 0 1 0 1 TCIRG1 chr11:67810110 3'AG 67810110 Downstream 22bp 33916 chr3 14745941 14745941 1 + C T COAD 14745942 + 14745922 14745962 41 CTCTCATCTAATGTTGGCCCGCAAAGGAGACTCTCAGACCC CTCTCATCTAATGTTGGCCTGCAAAGGAGACTCTCAGACCC < 41bp 0.523933564221108 0.725651228748716 NA NA prediction 0.403435329055216 Functional Gain - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14745942 chr3:14745941 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36879 0 0 0 0 1 C3orf20 chr3:14745844 3'AG 14745844 Downstream 98bp 33917 chr21 43524017 43524017 1 + C T GBM 43524018 + 43523998 43524038 41 AGTGGTGTCTGACTTGTACCGAAGTGGGAAGCTGAGAATGC AGTGGTGTCTGACTTGTACTGAAGTGGGAAGCTGAGAATGC < 41bp 0.514809086286651 0.716526525623406 NA NA prediction 0.40343487867351 Functional Gain - UMODL1 ENSG00000177398;ENSG00000184385 CDS Human other chr21:43524018 chr21:43524017 stopgain 0.008 0 20 hm7G_associated_SNPs_36880 0 0 0 0 1 UMODL1 chr21:43523978 3'AG 43523978 Downstream 40bp 33918 chr5 133896479 133896479 1 + G A GBM 133896480 + 133896460 133896500 41 CATTAGAGCGTGTGCTGGAGGAGCTGGAGACCCTGTGCCAC CATTAGAGCGTGTGCTGGAAGAGCTGGAGACCCTGTGCCAC < 41bp 0.512868255299568 0.714585201348167 NA NA prediction 0.403433892097197 Functional Gain - JADE2 ENSG00000043143 CDS Human protein_coding chr5:133896480 chr5:133896479 synonymous SNV . 0 20 hm7G_associated_SNPs_36881 0 0 0 0 1 JADE2 chr5:133896436 3'AG 133896436 Downstream 44bp 33919 chrX 53112404 53112404 1 + C T UCEC 53112405 + 53112385 53112425 41 AGCCTTCCTGCGTCTCAAGCGCAAGTTCATCCAGATGCGAA AGCCTTCCTGCGTCTCAAGTGCAAGTTCATCCAGATGCGAA < 41bp 0.551354234509875 0.753069069663392 NA NA prediction 0.403429670307036 Functional Gain - TSPYL2 ENSG00000184205 CDS Human protein_coding chrX:53112405 chrX:53112404 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_36885 0 0 1 0 1 TSPYL2 chrX:53112487 5'GT 53112487 Upstream 84bp 33920 chr1 171077319 171077319 1 + C T SKCM 171077320 + 171077300 171077340 41 GTGGTTGGCCTGGGGAATTCGGGCTGTGATATTGCCACAGA GTGGTTGGCCTGGGGAATTTGGGCTGTGATATTGCCACAGA < 41bp 0.496551050887997 0.701713764925869 NA NA prediction 0.403427529851737 Functional Gain - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171077320 chr1:171077319 nonsynonymous SNV 0.775 2 20 hm7G_associated_SNPs_36886 0 0 0 0 2 FMO3 chr1:171077220 3'AG 171077220 Downstream 100bp 33921 chr1 171077319 171077319 1 + C T SKCM 171077320 + 171077300 171077340 41 GTGGTTGGCCTGGGGAATTCGGGCTGTGATATTGCCACAGA GTGGTTGGCCTGGGGAATTTGGGCTGTGATATTGCCACAGA < 41bp 0.496551050887997 0.701713764925869 NA NA prediction 0.403427529851737 Functional Gain - FMO3 ENSG00000007933 CDS Human protein_coding chr1:171077320 chr1:171077319 nonsynonymous SNV 0.775 2 20 hm7G_associated_SNPs_36886 0 0 0 0 2 FMO3 chr1:171077362 5'GT 171077362 Upstream 44bp 33922 chr9 139888077 139888077 1 + G A BRCA 139888078 + 139888058 139888098 41 GGACCTGGAGTCAGGAGGCGGTGTCCAGGAGAGTCGCTCAT GGACCTGGAGTCAGGAGGCAGTGTCCAGGAGAGTCGCTCAT < 41bp 0.552327669419884 0.754040911810305 NA NA prediction 0.403426484780842 Functional Gain - C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139888078 chr9:139888077 nonsynonymous SNV 0.973 2 20 hm7G_associated_SNPs_36887 0 0 1 0 2 C9orf142 chr9:139888032 3'AG 139888032 Downstream 46bp 33923 chr9 139888077 139888077 1 + G A BRCA 139888078 + 139888058 139888098 41 GGACCTGGAGTCAGGAGGCGGTGTCCAGGAGAGTCGCTCAT GGACCTGGAGTCAGGAGGCAGTGTCCAGGAGAGTCGCTCAT < 41bp 0.552327669419884 0.754040911810305 NA NA prediction 0.403426484780842 Functional Gain - C9orf142 ENSG00000148362 CDS Human protein_coding chr9:139888078 chr9:139888077 nonsynonymous SNV 0.973 2 20 hm7G_associated_SNPs_36887 0 0 1 0 2 C9orf142 chr9:139888116 5'GT 139888116 Upstream 40bp 33924 chr9 136305568 136305568 1 + G T UCEC 136305569 + 136305549 136305589 41 GTCGTGTCGAGTACAGAGTGGCCCTCACCGAGGACCGGCTG GTCGTGTCGAGTACAGAGTTGCCCTCACCGAGGACCGGCTG < 41bp 0.350444872083971 0.701709704520945 NA NA prediction 0.40341940904189 Functional Gain - ADAMTS13 ENSG00000160323 CDS Human protein_coding chr9:136305569 chr9:136305568 synonymous SNV . 0 20 hm7G_associated_SNPs_36890 0 0 0 0 1 ADAMTS13 chr9:136305646 5'GT 136305646 Upstream 79bp 33925 chr1 171249949 171249949 1 + G A SKCM 171249950 + 171249930 171249970 41 CCTCAGCACCACCGGAGGGGGATGGGTGATCAGCCGAATCT CCTCAGCACCACCGGAGGGAGATGGGTGATCAGCCGAATCT < 41bp 0.503094987847788 0.704803328165981 NA NA prediction 0.403416680636386 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171249950 chr1:171249949 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_36892 0 0 0 0 1 FMO1 chr1:171249925 3'AG 171249925 Downstream 25bp 33926 chr8 133844569 133844569 1 + C T UCEC 133844570 + 133844550 133844590 41 TGGGAGTTCTCTGGCTTCACGAAGCATGTTTACGGAGAAAA TGGGAGTTCTCTGGCTTCATGAAGCATGTTTACGGAGAAAA < 41bp 0.54892647390476 0.750632937782246 NA NA prediction 0.403412927754973 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133844570 chr8:133844569 stopgain 0.892 0 20 hm7G_associated_SNPs_36893 0 0 1 0 2 PHF20L1 chr8:133844480 3'AG 133844480 Downstream 90bp 33927 chr8 133844569 133844569 1 + C T UCEC 133844570 + 133844550 133844590 41 TGGGAGTTCTCTGGCTTCACGAAGCATGTTTACGGAGAAAA TGGGAGTTCTCTGGCTTCATGAAGCATGTTTACGGAGAAAA < 41bp 0.54892647390476 0.750632937782246 NA NA prediction 0.403412927754973 Functional Gain - PHF20L1 ENSG00000129292 CDS Human protein_coding chr8:133844570 chr8:133844569 stopgain 0.892 0 20 hm7G_associated_SNPs_36893 0 0 1 0 2 PHF20L1 chr8:133844644 5'GT 133844644 Upstream 76bp 33928 chr22 20074137 20074137 1 + C T COAD 20074138 + 20074118 20074158 41 TAGATGAAGAAGGAGCAGGCGGGTTCACGGCTAAAGCAATC TAGATGAAGAAGGAGCAGGTGGGTTCACGGCTAAAGCAATC < 41bp 0.551068199292149 0.752773636985038 NA NA prediction 0.403410875385778 Functional Gain - DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20074138 chr22:20074137 synonymous SNV . 0 20 hm7G_associated_SNPs_36894 0 0 1 0 1 DGCR8 chr22:20074206 5'GT 20074206 Upstream 70bp 33929 chr20 39794342 39794342 1 + C T STAD 39794343 + 39794323 39794363 41 TGGGAAGCTAGGGGCAGGGCGTGACGGGCGTCACATCGCTG TGGGAAGCTAGGGGCAGGGTGTGACGGGCGTCACATCGCTG < 41bp 0.536045075510405 0.737750399530985 NA NA prediction 0.403410648041158 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39794343 chr20:39794342 nonsynonymous SNV 0.967 4 20 hm7G_associated_SNPs_36895 0 0 1 0 1 PLCG1 chr20:39794279 3'AG 39794279 Downstream 64bp 33930 chr16 89590650 89590650 1 + C T BLCA 89590651 + 89590631 89590671 41 TGGAGCCGTGGTGTTTGGGCGGCCTGTGAGTGAGGGTGCGG TGGAGCCGTGGTGTTTGGGTGGCCTGTGAGTGAGGGTGCGG < 41bp 0.497185323341927 0.701705220121111 NA NA prediction 0.403410440242221 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89590651 chr16:89590650 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_36896 0 0 1 0 1 SPG7 chr16:89590655 5'GT 89590655 Upstream 6bp 33931 chr16 22152906 22152906 1 + C T LGG 22152907 + 22152887 22152927 41 GCCAAATGTTCCTCAGCTGCGGCCCAGCCAACGAAAGAAGG GCCAAATGTTCCTCAGCTGTGGCCCAGCCAACGAAAGAAGG < 41bp 0.531695288104998 0.733400195881754 NA NA prediction 0.403409815553513 Functional Gain - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22152907 chr16:22152906 nonsynonymous SNV 0.773 0 20 hm7G_associated_SNPs_36897 0 0 0 0 1 VWA3A chr16:22152903 3'AG 22152903 Downstream 4bp 33932 chr6 41895194 41895194 1 + G A COAD 41895195 + 41895175 41895215 41 CTGCCACAATGACAGCAGCGGGCCATCATGCAGAGGTGGTT CTGCCACAATGACAGCAGCAGGCCATCATGCAGAGGTGGTT < 41bp 0.558945576263374 0.760649363889012 NA NA prediction 0.403407575251274 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41895195 chr6:41895194 synonymous SNV . 0 20 hm7G_associated_SNPs_36899 0 0 1 0 2 BYSL chr6:41895112 3'AG 41895112 Downstream 83bp 33933 chr6 41895194 41895194 1 + G A COAD 41895195 + 41895175 41895215 41 CTGCCACAATGACAGCAGCGGGCCATCATGCAGAGGTGGTT CTGCCACAATGACAGCAGCAGGCCATCATGCAGAGGTGGTT < 41bp 0.558945576263374 0.760649363889012 NA NA prediction 0.403407575251274 Functional Gain - BYSL ENSG00000112578 CDS Human protein_coding chr6:41895195 chr6:41895194 synonymous SNV . 0 20 hm7G_associated_SNPs_36899 0 0 1 0 2 BYSL chr6:41895274 5'GT 41895274 Upstream 81bp 33934 chr12 111345178 111345178 1 + C T rs116390720 111345179 + 111345159 111345199 41 GCCTTCGGCAGCTGGTTCTCGACAATTATATCCTGAAGGAG GCCTTCGGCAGCTGGTTCTTGACAATTATATCCTGAAGGAG < 41bp 0.50533232309821 0.707033768851473 NA NA prediction 0.403402891506526 Functional Gain - CCDC63 ENSG00000173093 CDS Human protein_coding chr12:111345179 chr12:111345178 synonymous SNV . 0 20 hm7G_associated_SNPs_36901 0 0 0 0 1 CCDC63 chr12:111345135 3'AG 111345135 Downstream 44bp 33935 chr1 3347517 3347517 1 + C T STAD 3347518 + 3347498 3347538 41 AGGACGTGGAGGAGGAGGACGACGATGACCTGGAGGAGGAC AGGACGTGGAGGAGGAGGATGACGATGACCTGGAGGAGGAC < 41bp 0.535827681540934 0.73752865537099 NA NA prediction 0.403401947660113 Functional Gain - PRDM16 ENSG00000142611 CDS Human protein_coding chr1:3347518 chr1:3347517 synonymous SNV . 0 20 hm7G_associated_SNPs_36902 1 0 0 0 1 PRDM16 chr1:3347436 3'AG 3347436 Downstream 82bp 33936 chr20 31876575 31876575 1 + C T PAAD 31876576 + 31876556 31876596 41 AGGAGCTGAAGGACCACAACGCCACCAGCATCCTGCAGCAG AGGAGCTGAAGGACCACAATGCCACCAGCATCCTGCAGCAG < 41bp 0.493681581909852 0.701698791480469 NA NA prediction 0.403397582960939 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31876576 chr20:31876575 synonymous SNV . 0 20 hm7G_associated_SNPs_36903 0 0 0 0 1 BPIFB1 chr20:31876547 3'AG 31876547 Downstream 29bp 33937 chr5 75505623 75505623 1 + G A LGG 75505624 + 75505604 75505644 41 GTCCTGGCCCGGGAAAAGCGGGGCGAACACTTGAGCTGGCT GTCCTGGCCCGGGAAAAGCAGGGCGAACACTTGAGCTGGCT < 41bp 0.540057459422717 0.741755376299952 NA NA prediction 0.40339583375447 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75505624 chr5:75505623 nonsynonymous SNV 0.975 5 20 hm7G_associated_SNPs_36904 0 0 0 0 2 SV2C chr5:75505561 3'AG 75505561 Downstream 63bp 33938 chr5 75505623 75505623 1 + G A LGG 75505624 + 75505604 75505644 41 GTCCTGGCCCGGGAAAAGCGGGGCGAACACTTGAGCTGGCT GTCCTGGCCCGGGAAAAGCAGGGCGAACACTTGAGCTGGCT < 41bp 0.540057459422717 0.741755376299952 NA NA prediction 0.40339583375447 Functional Gain - SV2C ENSG00000122012 CDS Human protein_coding chr5:75505624 chr5:75505623 nonsynonymous SNV 0.975 5 20 hm7G_associated_SNPs_36904 0 0 0 0 2 SV2C chr5:75505712 5'GT 75505712 Upstream 90bp 33939 chr11 93913410 93913410 1 + G A rs369648726 93913411 + 93913391 93913431 41 AGGAGCAGGGGAACCAGACGGCAGAGCTCCAAGGTAGGGTT AGGAGCAGGGGAACCAGACAGCAGAGCTCCAAGGTAGGGTT < 41bp 0.499736919321864 0.701696169443795 NA NA prediction 0.403392338887589 Functional Gain - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93913411 chr11:93913410 synonymous SNV . 0 20 hm7G_associated_SNPs_36905 0 0 0 0 1 PANX1 chr11:93913423 5'GT 93913423 Upstream 14bp 33940 chr9 131380386 131380386 1 + C T LAML 131380387 + 131380367 131380407 41 GAAGCAGCTGGCAGCTGCCCGGTGAGTAGTCAGAGGCAGGA GAAGCAGCTGGCAGCTGCCTGGTGAGTAGTCAGAGGCAGGA < 41bp 0.514422171875831 0.716118226649674 NA NA prediction 0.403392109547686 Functional Gain - SPTAN1 ENSG00000197694 CDS Human protein_coding chr9:131380387 chr9:131380386 nonsynonymous SNV 0.798 4 20 hm7G_associated_SNPs_36906 0 0 1 0 1 SPTAN1 chr9:131380387 5'GT 131380387 Upstream 2bp 33941 chr17 26824121 26824121 1 + G T LUSC 26824122 + 26824102 26824142 41 CTCTCCTCACACCAGGCCCGGGCAGGATTCCTCCTCAACAT CTCTCCTCACACCAGGCCCTGGCAGGATTCCTCCTCAACAT < 41bp 0.378100470078267 0.701695118475552 NA NA prediction 0.403390236951104 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26824122 chr17:26824121 nonsynonymous SNV 0.325 2 20 hm7G_associated_SNPs_36907 0 0 0 0 1 SLC13A2 chr17:26824117 3'AG 26824117 Downstream 5bp 33942 chr1 114191891 114191891 1 + C T UCEC 114191892 + 114191872 114191912 41 AGATTTGGATGTTTTTCTTCGAAAACAAGAGTCAGGGTTTG AGATTTGGATGTTTTTCTTTGAAAACAAGAGTCAGGGTTTG < 41bp 0.526795182511323 0.728489825408591 NA NA prediction 0.403389285794538 Functional Gain - MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114191892 chr1:114191891 stopgain 1.000 1 20 hm7G_associated_SNPs_36908 0 0 0 0 2 MAGI3 chr1:114191859 3'AG 114191859 Downstream 33bp 33943 chr1 114191891 114191891 1 + C T UCEC 114191892 + 114191872 114191912 41 AGATTTGGATGTTTTTCTTCGAAAACAAGAGTCAGGGTTTG AGATTTGGATGTTTTTCTTTGAAAACAAGAGTCAGGGTTTG < 41bp 0.526795182511323 0.728489825408591 NA NA prediction 0.403389285794538 Functional Gain - MAGI3 ENSG00000081026 CDS Human protein_coding chr1:114191892 chr1:114191891 stopgain 1.000 1 20 hm7G_associated_SNPs_36908 0 0 0 0 2 MAGI3 chr1:114191950 5'GT 114191950 Upstream 60bp 33944 chr13 46066297 46066297 1 + C T COAD 46066298 + 46066278 46066318 41 TGTTTGTTTACTGCAGGTTCGTAGTGGCTGTGCCTTCATGG TGTTTGTTTACTGCAGGTTTGTAGTGGCTGTGCCTTCATGG < 41bp 0.50563294327754 0.707327320538112 NA NA prediction 0.403388754521143 Functional Gain - COG3 ENSG00000136152 CDS Human protein_coding chr13:46066298 chr13:46066297 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_36909 0 0 1 0 1 COG3 chr13:46066294 3'AG 46066294 Downstream 4bp 33945 chr2 46609650 46609650 1 + G A BLCA 46609651 + 46609631 46609671 41 TCCATCTGCCATCAGTCCCGGGGAGAACAGCAAGAGCAGGT TCCATCTGCCATCAGTCCCAGGGAGAACAGCAAGAGCAGGT < 41bp 0.528652498229127 0.730346741913107 NA NA prediction 0.40338848736796 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609651 chr2:46609650 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_36910 0 0 0 0 2 EPAS1 chr2:46609564 3'AG 46609564 Downstream 87bp 33946 chr2 46609650 46609650 1 + G A BLCA 46609651 + 46609631 46609671 41 TCCATCTGCCATCAGTCCCGGGGAGAACAGCAAGAGCAGGT TCCATCTGCCATCAGTCCCAGGGAGAACAGCAAGAGCAGGT < 41bp 0.528652498229127 0.730346741913107 NA NA prediction 0.40338848736796 Functional Gain - EPAS1 ENSG00000116016 CDS Human protein_coding chr2:46609651 chr2:46609650 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_36910 0 0 0 0 2 EPAS1 chr2:46609737 5'GT 46609737 Upstream 88bp 33947 chr11 121023708 121023708 1 + C T UCEC 121023709 + 121023689 121023729 41 GCGTGGAGGGCTGTCACTGCGACGCTGGCTACGTCCTCAAC GCGTGGAGGGCTGTCACTGTGACGCTGGCTACGTCCTCAAC < 41bp 0.48430565565789 0.70169358016014 NA NA prediction 0.403387160320281 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121023709 chr11:121023708 synonymous SNV . 0 20 hm7G_associated_SNPs_36911 0 0 0 0 1 TECTA chr11:121023789 5'GT 121023789 Upstream 82bp 33948 chr12 8866600 8866600 1 + G T HNSC 8866601 + 8866581 8866621 41 ACTTTAGGGCTGTGGTGATGGATGAGGTGGTGCTGACAATC ACTTTAGGGCTGTGGTGATTGATGAGGTGGTGCTGACAATC < 41bp 0.708487243395714 0.910179216823193 NA NA prediction 0.403383946854958 Functional Gain - RIMKLB ENSG00000166532 CDS Human protein_coding chr12:8866601 chr12:8866600 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_36912 0 0 1 3 1 RIMKLB chr12:8866637 5'GT 8866637 Upstream 38bp 33949 chr3 53891664 53891664 1 + C T STAD 53891665 + 53891645 53891685 41 ACACCAGAAGAAACAAACGCGAGCTTCAGTGGTGATTCCAG ACACCAGAAGAAACAAACGTGAGCTTCAGTGGTGATTCCAG < 41bp 0.495317463173757 0.701691453965309 NA NA prediction 0.403382907930618 Functional Gain - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53891665 chr3:53891664 stopgain 0.001 0 20 hm7G_associated_SNPs_36913 0 0 1 0 2 IL17RB chr3:53891643 3'AG 53891643 Downstream 22bp 33950 chr3 53891664 53891664 1 + C T STAD 53891665 + 53891645 53891685 41 ACACCAGAAGAAACAAACGCGAGCTTCAGTGGTGATTCCAG ACACCAGAAGAAACAAACGTGAGCTTCAGTGGTGATTCCAG < 41bp 0.495317463173757 0.701691453965309 NA NA prediction 0.403382907930618 Functional Gain - IL17RB ENSG00000056736 CDS Human protein_coding chr3:53891665 chr3:53891664 stopgain 0.001 0 20 hm7G_associated_SNPs_36913 0 0 1 0 2 IL17RB chr3:53891717 5'GT 53891717 Upstream 54bp 33951 chr16 2647662 2647662 1 + C T COAD 2647663 + 2647643 2647683 41 TCTTCGCAGCCTAACAGGACGTATTATCTGATGGACCCCAG TCTTCGCAGCCTAACAGGATGTATTATCTGATGGACCCCAG < 41bp 0.502029144917746 0.703720309886819 NA NA prediction 0.403382329938146 Functional Gain - PDPK1 ENSG00000140992 CDS Human protein_coding chr16:2647663 chr16:2647662 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_36915 0 0 1 0 1 PDPK1 chr16:2647652 3'AG 2647652 Downstream 11bp 33952 chr10 88416025 88416025 1 + G A UCEC 88416026 + 88416006 88416046 41 TGGGACTCACGGGGATGCTGGGCAACCTGACGGTCATCTAT TGGGACTCACGGGGATGCTAGGCAACCTGACGGTCATCTAT < 41bp 0.476754300691946 0.701690655162243 NA NA prediction 0.403381310324486 Functional Gain - OPN4 ENSG00000122375 CDS Human protein_coding chr10:88416026 chr10:88416025 synonymous SNV . 0 20 hm7G_associated_SNPs_36916 0 0 0 0 1 OPN4 chr10:88416057 5'GT 88416057 Upstream 33bp 33953 chr1 151665017 151665017 1 + C T UCEC 151665018 + 151664998 151665038 41 ATCACAGCCATCAGCATCACGCACTTTAAACTGCATGCCTG ATCACAGCCATCAGCATCATGCACTTTAAACTGCATGCCTG < 41bp 0.542894533465486 0.744583554127335 NA NA prediction 0.403378041323698 Functional Gain - SNX27 ENSG00000143376 CDS Human protein_coding chr1:151665018 chr1:151665017 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_36918 0 0 0 0 1 SNX27 chr1:151665060 5'GT 151665060 Upstream 44bp 33954 chr7 106520026 106520026 1 + C T COAD 106520027 + 106520007 106520047 41 GGCTTGAGTTTAAATGTGCCGATCCTACAGCCCTATCAAAT GGCTTGAGTTTAAATGTGCTGATCCTACAGCCCTATCAAAT < 41bp 0.552404257040169 0.754092733168612 NA NA prediction 0.403376952256886 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106520027 chr7:106520026 synonymous SNV . 0 20 hm7G_associated_SNPs_36919 0 0 0 0 2 PIK3CG chr7:106519964 3'AG 106519964 Downstream 63bp 33955 chr7 106520026 106520026 1 + C T COAD 106520027 + 106520007 106520047 41 GGCTTGAGTTTAAATGTGCCGATCCTACAGCCCTATCAAAT GGCTTGAGTTTAAATGTGCTGATCCTACAGCCCTATCAAAT < 41bp 0.552404257040169 0.754092733168612 NA NA prediction 0.403376952256886 Functional Gain - PIK3CG ENSG00000105851 CDS Human protein_coding chr7:106520027 chr7:106520026 synonymous SNV . 0 20 hm7G_associated_SNPs_36919 0 0 0 0 2 PIK3CG chr7:106520110 5'GT 106520110 Upstream 85bp 33956 chr12 8276482 8276482 1 + C T UCEC 8276483 + 8276463 8276503 41 TCTCTTCCCATTATGACTTCGGAAATCACTTATGCTGAAGT TCTCTTCCCATTATGACTTTGGAAATCACTTATGCTGAAGT < 41bp 0.501726633672532 0.70341360292948 NA NA prediction 0.403373938513895 Functional Gain - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8276483 chr12:8276482 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_36920 0 0 0 0 1 CLEC4A chr12:8276556 5'GT 8276556 Upstream 75bp 33957 chr5 36684083 36684083 1 + C T OV 36684084 + 36684064 36684104 41 ACGACATCACGCTCATCATCGCGGTGGACTGGTTCCTGTGA ACGACATCACGCTCATCATTGCGGTGGACTGGTTCCTGTGA < 41bp 0.503033867970704 0.704718982255405 NA NA prediction 0.403370228569403 Functional Gain - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36684084 chr5:36684083 synonymous SNV . 0 20 hm7G_associated_SNPs_36922 0 0 0 0 1 SLC1A3 chr5:36684100 5'GT 36684100 Upstream 18bp 33958 chr1 1562091 1562091 1 + G A rs74047808 1562092 + 1562072 1562112 41 GACCTTGACACAGTGAAGCGGCTGCAGGCTGGGCATGGCGA GACCTTGACACAGTGAAGCAGCTGCAGGCTGGGCATGGCGA < 41bp 0.567265947811135 0.768950154154198 NA NA prediction 0.403368412686126 Functional Gain - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1562092 chr1:1562091 nonsynonymous SNV 0.914 1 20 hm7G_associated_SNPs_36923 0 0 1 0 2 MIB2 chr1:1562030 3'AG 1562030 Downstream 62bp 33959 chr1 1562091 1562091 1 + G A rs74047808 1562092 + 1562072 1562112 41 GACCTTGACACAGTGAAGCGGCTGCAGGCTGGGCATGGCGA GACCTTGACACAGTGAAGCAGCTGCAGGCTGGGCATGGCGA < 41bp 0.567265947811135 0.768950154154198 NA NA prediction 0.403368412686126 Functional Gain - MIB2 ENSG00000197530 CDS Human protein_coding chr1:1562092 chr1:1562091 nonsynonymous SNV 0.914 1 20 hm7G_associated_SNPs_36923 0 0 1 0 2 MIB2 chr1:1562134 5'GT 1562134 Upstream 44bp 33960 chr10 43871011 43871011 1 + G A rs146396887 43871012 + 43870992 43871032 41 TGGCCATTGCTGGGATCGCGGCAGTTCTGAGTGAGTGGCAG TGGCCATTGCTGGGATCGCAGCAGTTCTGAGTGAGTGGCAG < 41bp 0.553869563963672 0.755552047320174 NA NA prediction 0.403364966713002 Functional Gain - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43871012 chr10:43871011 synonymous SNV . 0 20 hm7G_associated_SNPs_36924 0 0 0 0 2 FXYD4 chr10:43870947 3'AG 43870947 Downstream 65bp 33961 chr10 43871011 43871011 1 + G A rs146396887 43871012 + 43870992 43871032 41 TGGCCATTGCTGGGATCGCGGCAGTTCTGAGTGAGTGGCAG TGGCCATTGCTGGGATCGCAGCAGTTCTGAGTGAGTGGCAG < 41bp 0.553869563963672 0.755552047320174 NA NA prediction 0.403364966713002 Functional Gain - FXYD4 ENSG00000150201 CDS Human protein_coding chr10:43871012 chr10:43871011 synonymous SNV . 0 20 hm7G_associated_SNPs_36924 0 0 0 0 2 FXYD4 chr10:43871021 5'GT 43871021 Upstream 11bp 33962 chr11 129306679 129306679 1 + C T rs551250441 129306680 + 129306660 129306700 41 CGGGCATATCCGCTCCTCTCGGTGATCACCCGCCAGCCCAC CGGGCATATCCGCTCCTCTTGGTGATCACCCGCCAGCCCAC < 41bp 0.533526320635733 0.735208608729079 NA NA prediction 0.403364576186693 Functional Gain - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129306680 chr11:129306679 nonsynonymous SNV 0.854 5 20 hm7G_associated_SNPs_36925 0 0 1 0 1 BARX2 chr11:129306646 3'AG 129306646 Downstream 34bp 33963 chr2 217315647 217315647 1 + C T STAD 217315648 + 217315628 217315668 41 GGAGGAAGCAGTCATGCTGCGGCGCCTCAAGTCCGACGTCC GGAGGAAGCAGTCATGCTGTGGCGCCTCAAGTCCGACGTCC < 41bp 0.55362233897279 0.755303900329234 NA NA prediction 0.403363122712888 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217315648 chr2:217315647 nonsynonymous SNV 0.987 5 20 hm7G_associated_SNPs_36926 0 0 0 0 1 SMARCAL1 chr2:217315569 3'AG 217315569 Downstream 79bp 33964 chr10 5496393 5496393 1 + C T BLCA 5496394 + 5496374 5496414 41 GAGTTTCCTAGATATCCCTCGAAGTCGCCTAGTCAAATACC GAGTTTCCTAGATATCCCTTGAAGTCGCCTAGTCAAATACC < 41bp 0.547586040251524 0.749267326553562 NA NA prediction 0.403362572604075 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5496394 chr10:5496393 stopgain 1.000 0 20 hm7G_associated_SNPs_36927 0 0 1 0 1 NET1 chr10:5496485 5'GT 5496485 Upstream 93bp 33965 chr9 117086343 117086343 1 + G A SKCM 117086344 + 117086324 117086364 41 CCTACCTGAATGTCCAGCGGGAAAATGGGACCATCTCCAGA CCTACCTGAATGTCCAGCGAGAAAATGGGACCATCTCCAGA < 41bp 0.5239741018254 0.725654664203103 NA NA prediction 0.403361124755404 Functional Gain - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117086344 chr9:117086343 synonymous SNV . 0 20 hm7G_associated_SNPs_36928 0 0 1 0 2 ORM1 chr9:117086298 3'AG 117086298 Downstream 46bp 33966 chr9 117086343 117086343 1 + G A SKCM 117086344 + 117086324 117086364 41 CCTACCTGAATGTCCAGCGGGAAAATGGGACCATCTCCAGA CCTACCTGAATGTCCAGCGAGAAAATGGGACCATCTCCAGA < 41bp 0.5239741018254 0.725654664203103 NA NA prediction 0.403361124755404 Functional Gain - ORM1 ENSG00000229314 CDS Human protein_coding chr9:117086344 chr9:117086343 synonymous SNV . 0 20 hm7G_associated_SNPs_36928 0 0 1 0 2 ORM1 chr9:117086368 5'GT 117086368 Upstream 26bp 33967 chr5 109120469 109120469 1 + C T SKCM 109120470 + 109120450 109120490 41 CTGAAATTCTTTACTATTTCGCCCTGAGACAAGCTCACAAA CTGAAATTCTTTACTATTTTGCCCTGAGACAAGCTCACAAA < 41bp 0.530856438418759 0.732536623264871 NA NA prediction 0.403360369692224 Functional Gain - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109120470 chr5:109120469 synonymous SNV . 0 20 hm7G_associated_SNPs_36929 0 0 1 0 1 MAN2A1 chr5:109120445 3'AG 109120445 Downstream 25bp 33968 chr8 30924630 30924630 1 + C T KICH 30924631 + 30924611 30924651 41 CCTGAAAGACAAGTCTATCCGCTGTAGCAATTGGAGTAAAT CCTGAAAGACAAGTCTATCTGCTGTAGCAATTGGAGTAAAT < 41bp 0.558046971493016 0.759725717220341 NA NA prediction 0.40335749145465 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:30924631 chr8:30924630 nonsynonymous SNV 0.967 3 20 hm7G_associated_SNPs_36930 0 0 1 0 2 WRN chr8:30924549 3'AG 30924549 Downstream 82bp 33969 chr8 30924630 30924630 1 + C T KICH 30924631 + 30924611 30924651 41 CCTGAAAGACAAGTCTATCCGCTGTAGCAATTGGAGTAAAT CCTGAAAGACAAGTCTATCTGCTGTAGCAATTGGAGTAAAT < 41bp 0.558046971493016 0.759725717220341 NA NA prediction 0.40335749145465 Functional Gain - WRN ENSG00000165392 CDS Human protein_coding chr8:30924631 chr8:30924630 nonsynonymous SNV 0.967 3 20 hm7G_associated_SNPs_36930 0 0 1 0 2 WRN chr8:30924698 5'GT 30924698 Upstream 69bp 33970 chr7 4830482 4830482 1 + C T PRAD 4830483 + 4830463 4830503 41 GTGCTGATGACCACGCTGACGAAGCTGGCCTCCCGGAGCCA GTGCTGATGACCACGCTGATGAAGCTGGCCTCCCGGAGCCA < 41bp 0.529233335096836 0.730911443121491 NA NA prediction 0.40335621604931 Functional Gain - AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4830483 chr7:4830482 nonsynonymous SNV 0.779 3 20 hm7G_associated_SNPs_36931 0 0 1 0 1 AP5Z1 chr7:4830518 5'GT 4830518 Upstream 37bp 33971 chr16 71674489 71674489 1 - G A UCEC 71674488 - 71674468 71674508 41 CGCCACCGTATATCAGGGGCGAGCGGAGGATCGTGTACTGC CGCCACCGTATATCAGGGGTGAGCGGAGGATCGTGTACTGC < 41bp 0.51199962115662 0.713675974853909 NA NA prediction 0.403352707394579 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71674488 chr16:71674489 synonymous SNV . 0 20 hm7G_associated_SNPs_36932 0 0 0 0 1 MARVELD3 chr16:71674425 5'GT 71674425 Upstream 65bp 33972 chr9 133285969 133285969 1 + G A rs112661203 133285970 + 133285950 133285990 41 ACTTGCAGAGGGACGATGCGGGACGGTACCAGTGCCTGGCA ACTTGCAGAGGGACGATGCAGGACGGTACCAGTGCCTGGCA < 41bp 0.490189816305768 0.70167592938988 NA NA prediction 0.40335185877976 Functional Gain - HMCN2 ENSG00000148357 CDS Human protein_coding chr9:133285970 chr9:133285969 synonymous SNV . 0 20 hm7G_associated_SNPs_36933 0 0 0 0 1 HMCN2 chr9:133285958 3'AG 133285958 Downstream 12bp 33973 chr4 160264510 160264510 1 + C T UCEC 160264511 + 160264491 160264531 41 AGAAATTCGTCACGTTGGCCGAATGGCTTCAGTGAACATGG AGAAATTCGTCACGTTGGCTGAATGGCTTCAGTGAACATGG < 41bp 0.491994393074206 0.701674773097266 NA NA prediction 0.403349546194532 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264511 chr4:160264510 stopgain 1.000 1 20 hm7G_associated_SNPs_36935 0 0 1 0 2 RAPGEF2 chr4:160264433 3'AG 160264433 Downstream 78bp 33974 chr4 160264510 160264510 1 + C T UCEC 160264511 + 160264491 160264531 41 AGAAATTCGTCACGTTGGCCGAATGGCTTCAGTGAACATGG AGAAATTCGTCACGTTGGCTGAATGGCTTCAGTGAACATGG < 41bp 0.491994393074206 0.701674773097266 NA NA prediction 0.403349546194532 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160264511 chr4:160264510 stopgain 1.000 1 20 hm7G_associated_SNPs_36935 0 0 1 0 2 RAPGEF2 chr4:160264556 5'GT 160264556 Upstream 47bp 33975 chr10 81063914 81063914 1 + C T rs116799693 81063915 + 81063895 81063935 41 AGCTGCCTGCTCGAGGACACGATTGCAAGCATGTGCAGGTG AGCTGCCTGCTCGAGGACATGATTGCAAGCATGTGCAGGTG < 41bp 0.532198360336744 0.733873089313679 NA NA prediction 0.40334945795387 Functional Gain - ZMIZ1 ENSG00000108175 CDS Human protein_coding chr10:81063915 chr10:81063914 synonymous SNV . 0 20 hm7G_associated_SNPs_36936 0 0 1 0 1 ZMIZ1 chr10:81063932 5'GT 81063932 Upstream 19bp 33976 chr21 37665661 37665661 1 + C T STAD 37665662 + 37665642 37665682 41 ACCATGAAGAGTGAATTCCCGCTTCTGCGCCAACATTCTGT ACCATGAAGAGTGAATTCCTGCTTCTGCGCCAACATTCTGT < 41bp 0.509923627032053 0.711598106962796 NA NA prediction 0.403348959861486 Functional Gain - DOPEY2 ENSG00000142197 CDS Human protein_coding chr21:37665662 chr21:37665661 nonsynonymous SNV 0.378 3 20 hm7G_associated_SNPs_36937 0 0 0 0 1 DOPEY2 chr21:37665618 3'AG 37665618 Downstream 44bp 33977 chr11 1956071 1956071 1 + G A HNSC 1956072 + 1956052 1956092 41 GCCCCAGGGACAAGGCCAAGGAGCTCTGGGAGACCCTGCAC GCCCCAGGGACAAGGCCAAAGAGCTCTGGGAGACCCTGCAC < 41bp 0.537062235900895 0.738735754488344 NA NA prediction 0.403347037174899 Functional Gain - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1956072 chr11:1956071 synonymous SNV . 0 20 hm7G_associated_SNPs_36938 0 0 0 0 1 TNNT3 chr11:1956059 3'AG 1956059 Downstream 13bp 33978 chr1 206653816 206653816 1 + G A SKCM 206653817 + 206653797 206653837 41 CTCCAGGCCACATGCAGACGGACTCTGGAAGTGGCAAGGAC CTCCAGGCCACATGCAGACAGACTCTGGAAGTGGCAAGGAC < 41bp 0.556063453822615 0.757736158643086 NA NA prediction 0.403345409640941 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653817 chr1:206653816 nonsynonymous SNV 0.596 0 20 hm7G_associated_SNPs_36939 0 0 0 0 2 IKBKE chr1:206653790 3'AG 206653790 Downstream 27bp 33979 chr1 206653816 206653816 1 + G A SKCM 206653817 + 206653797 206653837 41 CTCCAGGCCACATGCAGACGGACTCTGGAAGTGGCAAGGAC CTCCAGGCCACATGCAGACAGACTCTGGAAGTGGCAAGGAC < 41bp 0.556063453822615 0.757736158643086 NA NA prediction 0.403345409640941 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206653817 chr1:206653816 nonsynonymous SNV 0.596 0 20 hm7G_associated_SNPs_36939 0 0 0 0 2 IKBKE chr1:206653876 5'GT 206653876 Upstream 61bp 33980 chr15 29390775 29390775 1 + C T LGG 29390776 + 29390756 29390796 41 AAGGTTTTAAATGCAGACACGCAGGTAAGCGTTTAAGACAG AAGGTTTTAAATGCAGACATGCAGGTAAGCGTTTAAGACAG < 41bp 0.529448692118398 0.731120732401397 NA NA prediction 0.403344080565998 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29390776 chr15:29390775 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_36940 0 0 0 0 2 APBA2 chr15:29390693 3'AG 29390693 Downstream 83bp 33981 chr15 29390775 29390775 1 + C T LGG 29390776 + 29390756 29390796 41 AAGGTTTTAAATGCAGACACGCAGGTAAGCGTTTAAGACAG AAGGTTTTAAATGCAGACATGCAGGTAAGCGTTTAAGACAG < 41bp 0.529448692118398 0.731120732401397 NA NA prediction 0.403344080565998 Functional Gain - APBA2 ENSG00000034053 CDS Human protein_coding chr15:29390776 chr15:29390775 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_36940 0 0 0 0 2 APBA2 chr15:29390779 5'GT 29390779 Upstream 5bp 33982 chr22 50546582 50546582 1 + G A SKCM 50546583 + 50546563 50546603 41 AGGCTTCGAGCCCTGCAAGGGAGACTGGGTGGAGGCTGAGT AGGCTTCGAGCCCTGCAAGAGAGACTGGGTGGAGGCTGAGT < 41bp 0.496583818222076 0.701671491178055 NA NA prediction 0.40334298235611 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50546583 chr22:50546582 nonsynonymous SNV 0.235 4 20 hm7G_associated_SNPs_36941 0 0 0 0 2 MOV10L1 chr22:50546565 3'AG 50546565 Downstream 18bp 33983 chr22 50546582 50546582 1 + G A SKCM 50546583 + 50546563 50546603 41 AGGCTTCGAGCCCTGCAAGGGAGACTGGGTGGAGGCTGAGT AGGCTTCGAGCCCTGCAAGAGAGACTGGGTGGAGGCTGAGT < 41bp 0.496583818222076 0.701671491178055 NA NA prediction 0.40334298235611 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50546583 chr22:50546582 nonsynonymous SNV 0.235 4 20 hm7G_associated_SNPs_36941 0 0 0 0 2 MOV10L1 chr22:50546677 5'GT 50546677 Upstream 96bp 33984 chr12 122265484 122265484 1 + G A rs552687003 122265485 + 122265465 122265505 41 CAGGCTCGGAGCGGCGTTCGGAGCAGCGCCGCCTGCTGTCC CAGGCTCGGAGCGGCGTTCAGAGCAGCGCCGCCTGCTGTCC < 41bp 0.542965402627596 0.744636445249126 NA NA prediction 0.40334208524306 Functional Gain - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122265485 chr12:122265484 synonymous SNV . 0 20 hm7G_associated_SNPs_36942 0 0 0 0 2 SETD1B chr12:122265425 3'AG 122265425 Downstream 60bp 33985 chr12 122265484 122265484 1 + G A rs552687003 122265485 + 122265465 122265505 41 CAGGCTCGGAGCGGCGTTCGGAGCAGCGCCGCCTGCTGTCC CAGGCTCGGAGCGGCGTTCAGAGCAGCGCCGCCTGCTGTCC < 41bp 0.542965402627596 0.744636445249126 NA NA prediction 0.40334208524306 Functional Gain - SETD1B ENSG00000139718 CDS Human protein_coding chr12:122265485 chr12:122265484 synonymous SNV . 0 20 hm7G_associated_SNPs_36942 0 0 0 0 2 SETD1B chr12:122265556 5'GT 122265556 Upstream 73bp 33986 chr16 88688753 88688753 1 + C T CESC 88688754 + 88688734 88688774 41 GAGCCGGGCTCGAAGGCGTCGGAAAACATCAGCCTCGTCAG GAGCCGGGCTCGAAGGCGTTGGAAAACATCAGCCTCGTCAG < 41bp 0.552652355584753 0.75432285761534 NA NA prediction 0.403341004061174 Functional Gain - ZC3H18 ENSG00000158545 CDS Human protein_coding chr16:88688754 chr16:88688753 nonsynonymous SNV 0.950 4 20 hm7G_associated_SNPs_36944 0 0 1 0 1 ZC3H18 chr16:88688796 5'GT 88688796 Upstream 44bp 33987 chr1 17668883 17668883 1 + G A HNSC 17668884 + 17668864 17668904 41 ACACCCAGCCCCCGCAGGAGGTGTACGCGTGCAGGTGAGAG ACACCCAGCCCCCGCAGGAAGTGTACGCGTGCAGGTGAGAG < 41bp 0.555155080450331 0.756824780072964 NA NA prediction 0.403339399245266 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668884 chr1:17668883 synonymous SNV . 0 20 hm7G_associated_SNPs_36948 0 0 0 0 2 PADI4 chr1:17668794 3'AG 17668794 Downstream 90bp 33988 chr1 17668883 17668883 1 + G A HNSC 17668884 + 17668864 17668904 41 ACACCCAGCCCCCGCAGGAGGTGTACGCGTGCAGGTGAGAG ACACCCAGCCCCCGCAGGAAGTGTACGCGTGCAGGTGAGAG < 41bp 0.555155080450331 0.756824780072964 NA NA prediction 0.403339399245266 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668884 chr1:17668883 synonymous SNV . 0 20 hm7G_associated_SNPs_36948 0 0 0 0 2 PADI4 chr1:17668897 5'GT 17668897 Upstream 15bp 33989 chr4 110788861 110788861 1 + C T SKCM 110788862 + 110788842 110788882 41 TGATTGAGTTGTCAAAGGTCGTTGACCCTGCTATAGTGCTT TGATTGAGTTGTCAAAGGTTGTTGACCCTGCTATAGTGCTT < 41bp 0.499420803199596 0.701667340333192 NA NA prediction 0.403334680666384 Functional Gain - LRIT3 ENSG00000183423 CDS Human protein_coding chr4:110788862 chr4:110788861 synonymous SNV . 0 20 hm7G_associated_SNPs_36949 1 0 0 0 1 LRIT3 chr4:110788797 3'AG 110788797 Downstream 65bp 33990 chr17 59544956 59544956 1 + C T LUAD 59544957 + 59544937 59544977 41 CACAGGAGCCCACTGGATGCGGCAGCTGGTCTCCTTCCAGA CACAGGAGCCCACTGGATGTGGCAGCTGGTCTCCTTCCAGA < 41bp 0.556580125036591 0.758246848762627 NA NA prediction 0.403333447452071 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59544957 chr17:59544956 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_36950 0 0 0 0 2 TBX4 chr17:59544871 3'AG 59544871 Downstream 86bp 33991 chr17 59544956 59544956 1 + C T LUAD 59544957 + 59544937 59544977 41 CACAGGAGCCCACTGGATGCGGCAGCTGGTCTCCTTCCAGA CACAGGAGCCCACTGGATGTGGCAGCTGGTCTCCTTCCAGA < 41bp 0.556580125036591 0.758246848762627 NA NA prediction 0.403333447452071 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59544957 chr17:59544956 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_36950 0 0 0 0 2 TBX4 chr17:59545018 5'GT 59545018 Upstream 63bp 33992 chr2 75061695 75061695 1 + G T THCA 75061696 + 75061676 75061716 41 TTCCCAACTCTGCGCCGTCGGGCCGCGGCAGGATGATTGCC TTCCCAACTCTGCGCCGTCTGGCCGCGGCAGGATGATTGCC < 41bp 0.535113820125735 0.736780450539925 NA NA prediction 0.40333326082838 Functional Gain - HK2 ENSG00000159399 UTR5 Human protein_coding chr2:75061696 chr2:75061695 . . 0 20 hm7G_associated_SNPs_36951 0 0 1 0 1 HK2 chr2:75061770 5'GT 75061770 Upstream 76bp 33993 chr5 148997781 148997781 1 + G A CESC 148997782 + 148997762 148997802 41 CAGCTGACCCTCCGGGAGCGGCTGGCCCGCATCAACACACA CAGCTGACCCTCCGGGAGCAGCTGGCCCGCATCAACACACA < 41bp 0.564009520220146 0.765674274353112 NA NA prediction 0.403329508265933 Functional Gain - ARHGEF37 ENSG00000183111 CDS Human protein_coding chr5:148997782 chr5:148997781 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_36953 0 0 0 0 1 ARHGEF37 chr5:148997739 3'AG 148997739 Downstream 43bp 33994 chr15 77324683 77324683 1 + C T rs35860563 77324684 + 77324664 77324704 41 TGGAAGGCTGCAGCATAGACGCCGACATCGACAGTTTCATC TGGAAGGCTGCAGCATAGATGCCGACATCGACAGTTTCATC < 41bp 0.525261975426892 0.726920392387418 NA NA prediction 0.403316833921052 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77324684 chr15:77324683 synonymous SNV . 0 20 hm7G_associated_SNPs_36956 2 0 0 0 2 PSTPIP1 chr15:77324735 5'GT 77324735 Upstream 53bp 33995 chr15 77324683 77324683 1 + C T rs35860563 77324684 + 77324664 77324704 41 TGGAAGGCTGCAGCATAGACGCCGACATCGACAGTTTCATC TGGAAGGCTGCAGCATAGATGCCGACATCGACAGTTTCATC < 41bp 0.525261975426892 0.726920392387418 NA NA prediction 0.403316833921052 Functional Gain - PSTPIP1 ENSG00000140368 CDS Human protein_coding chr15:77324684 chr15:77324683 synonymous SNV . 0 20 hm7G_associated_SNPs_36956 2 0 0 0 2 PSTPIP1 chr15:77324769 5'GT 77324769 Upstream 87bp 33996 chr3 39543685 39543685 1 + G T LUSC 39543686 + 39543666 39543706 41 AAGAAGGAGATAGTGGATCGGAAATACAGCATCTGTAAGAG AAGAAGGAGATAGTGGATCTGAAATACAGCATCTGTAAGAG < 41bp 0.385538513731651 0.701657037221625 NA NA prediction 0.40331407444325 Functional Gain - MOBP ENSG00000168314 CDS Human protein_coding chr3:39543686 chr3:39543685 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_36957 0 0 0 0 1 MOBP chr3:39543766 5'GT 39543766 Upstream 82bp 33997 chr8 132952765 132952765 1 + C T UCEC 132952766 + 132952746 132952786 41 GAGTATGCTGCTGCTGTTCCGCTTTGCGTCCTCGCTACAAA GAGTATGCTGCTGCTGTTCTGCTTTGCGTCCTCGCTACAAA < 41bp 0.484921058259178 0.701655759599802 NA NA prediction 0.403311519199604 Functional Gain - EFR3A ENSG00000132294 CDS Human protein_coding chr8:132952766 chr8:132952765 synonymous SNV . 0 20 hm7G_associated_SNPs_36958 0 0 0 0 2 EFR3A chr8:132952746 3'AG 132952746 Downstream 20bp 33998 chr8 132952765 132952765 1 + C T UCEC 132952766 + 132952746 132952786 41 GAGTATGCTGCTGCTGTTCCGCTTTGCGTCCTCGCTACAAA GAGTATGCTGCTGCTGTTCTGCTTTGCGTCCTCGCTACAAA < 41bp 0.484921058259178 0.701655759599802 NA NA prediction 0.403311519199604 Functional Gain - EFR3A ENSG00000132294 CDS Human protein_coding chr8:132952766 chr8:132952765 synonymous SNV . 0 20 hm7G_associated_SNPs_36958 0 0 0 0 2 EFR3A chr8:132952822 5'GT 132952822 Upstream 58bp 33999 chr7 99802373 99802373 1 + C T HNSC 99802374 + 99802354 99802394 41 ACCCCAGCAGCTGCAGAACCGTGACCTCGTGGTCATGCTAC ACCCCAGCAGCTGCAGAACTGTGACCTCGTGGTCATGCTAC < 41bp 0.497250530449757 0.701654812708743 NA NA prediction 0.403309625417487 Functional Gain - STAG3 ENSG00000066923 CDS Human protein_coding chr7:99802374 chr7:99802373 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_36960 0 0 0 0 1 STAG3 chr7:99802398 5'GT 99802398 Upstream 26bp 34000 chrX 86888827 86888827 1 + G T LUSC 86888828 + 86888808 86888848 41 CTAAATACTGTAGAAAGATGGGACCCTGAGGGACGACAGTG CTAAATACTGTAGAAAGATTGGACCCTGAGGGACGACAGTG < 41bp 0.706523679944614 0.908176448451657 NA NA prediction 0.403305537014087 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86888828 chrX:86888827 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36963 0 0 0 0 2 KLHL4 chrX:86888749 3'AG 86888749 Downstream 79bp 34001 chrX 86888827 86888827 1 + G T LUSC 86888828 + 86888808 86888848 41 CTAAATACTGTAGAAAGATGGGACCCTGAGGGACGACAGTG CTAAATACTGTAGAAAGATTGGACCCTGAGGGACGACAGTG < 41bp 0.706523679944614 0.908176448451657 NA NA prediction 0.403305537014087 Functional Gain - KLHL4 ENSG00000102271 CDS Human protein_coding chrX:86888828 chrX:86888827 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36963 0 0 0 0 2 KLHL4 chrX:86888911 5'GT 86888911 Upstream 85bp 34002 chr1 42875719 42875719 1 + C T COAD 42875720 + 42875700 42875740 41 TCTGCCATCTGATCCGCCACGATGTGCCCTACCTGTTCCAG TCTGCCATCTGATCCGCCATGATGTGCCCTACCTGTTCCAG < 41bp 0.54560250311064 0.747255095525229 NA NA prediction 0.403305184829179 Functional Gain - RIMKLA ENSG00000177181 CDS Human protein_coding chr1:42875720 chr1:42875719 synonymous SNV . 0 20 hm7G_associated_SNPs_36964 0 0 0 0 1 RIMKLA chr1:42875655 3'AG 42875655 Downstream 65bp 34003 chr16 81293315 81293315 1 + C T COAD 81293316 + 81293296 81293336 41 GGAGCAAATACCTGAGAAGCGATACCTACAACACCAATATT GGAGCAAATACCTGAGAAGTGATACCTACAACACCAATATT < 41bp 0.514132822884271 0.715784709953619 NA NA prediction 0.403303774138696 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81293316 chr16:81293315 synonymous SNV . 0 20 hm7G_associated_SNPs_36965 0 0 0 0 2 BCO1 chr16:81293281 3'AG 81293281 Downstream 35bp 34004 chr16 81293315 81293315 1 + C T COAD 81293316 + 81293296 81293336 41 GGAGCAAATACCTGAGAAGCGATACCTACAACACCAATATT GGAGCAAATACCTGAGAAGTGATACCTACAACACCAATATT < 41bp 0.514132822884271 0.715784709953619 NA NA prediction 0.403303774138696 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81293316 chr16:81293315 synonymous SNV . 0 20 hm7G_associated_SNPs_36965 0 0 0 0 2 BCO1 chr16:81293410 5'GT 81293410 Upstream 96bp 34005 chr4 89425479 89425479 1 + C T UCEC 89425480 + 89425460 89425500 41 GATTTTATAAAATGTGCGACGAAGACATTATCAAATTATTC GATTTTATAAAATGTGCGATGAAGACATTATCAAATTATTC < 41bp 0.522722674186798 0.724372217913452 NA NA prediction 0.403299087453308 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89425480 chr4:89425479 synonymous SNV . 0 20 hm7G_associated_SNPs_36967 0 0 1 0 2 HERC5 chr4:89425383 3'AG 89425383 Downstream 97bp 34006 chr4 89425479 89425479 1 + C T UCEC 89425480 + 89425460 89425500 41 GATTTTATAAAATGTGCGACGAAGACATTATCAAATTATTC GATTTTATAAAATGTGCGATGAAGACATTATCAAATTATTC < 41bp 0.522722674186798 0.724372217913452 NA NA prediction 0.403299087453308 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89425480 chr4:89425479 synonymous SNV . 0 20 hm7G_associated_SNPs_36967 0 0 1 0 2 HERC5 chr4:89425566 5'GT 89425566 Upstream 88bp 34007 chr7 94915575 94915575 1 + G T LUAD 94915576 + 94915556 94915596 41 CAGTTCAGCAGACCTCAGCGGCTTAGGAGCAGAACCTAAAA CAGTTCAGCAGACCTCAGCTGCTTAGGAGCAGAACCTAAAA < 41bp 0.369353465503953 0.701648718472008 NA NA prediction 0.403297436944016 Functional Gain - PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94915576 chr7:94915575 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_36969 0 0 1 0 2 PPP1R9A chr7:94915518 3'AG 94915518 Downstream 58bp 34008 chr7 94915575 94915575 1 + G T LUAD 94915576 + 94915556 94915596 41 CAGTTCAGCAGACCTCAGCGGCTTAGGAGCAGAACCTAAAA CAGTTCAGCAGACCTCAGCTGCTTAGGAGCAGAACCTAAAA < 41bp 0.369353465503953 0.701648718472008 NA NA prediction 0.403297436944016 Functional Gain - PPP1R9A ENSG00000158528 CDS Human protein_coding chr7:94915576 chr7:94915575 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_36969 0 0 1 0 2 PPP1R9A chr7:94915637 5'GT 94915637 Upstream 63bp 34009 chr5 126783372 126783372 1 + C T UCEC 126783373 + 126783353 126783393 41 AGGGACAGGATGACTGTCACGAAGGTGAGAGGAATTGGTTC AGGGACAGGATGACTGTCATGAAGGTGAGAGGAATTGGTTC < 41bp 0.520456145799195 0.722104440416911 NA NA prediction 0.403296589235433 Functional Gain - MEGF10 ENSG00000145794 CDS Human protein_coding chr5:126783373 chr5:126783372 nonsynonymous SNV 0.105 1 20 hm7G_associated_SNPs_36970 0 0 0 0 1 MEGF10 chr5:126783376 5'GT 126783376 Upstream 5bp 34010 chr2 220396518 220396518 1 + G A SKCM 220396519 + 220396499 220396539 41 AGTGTTACACCTTCAACGCGGACCCGCGGAGCTCGCTGCCC AGTGTTACACCTTCAACGCAGACCCGCGGAGCTCGCTGCCC < 41bp 0.564055444922733 0.765702393353423 NA NA prediction 0.40329389686138 Functional Gain - ASIC4 ENSG00000072182 CDS Human protein_coding chr2:220396519 chr2:220396518 synonymous SNV . 0 20 hm7G_associated_SNPs_36973 0 0 1 0 1 ASIC4 chr2:220396480 3'AG 220396480 Downstream 39bp 34011 chr2 32875255 32875255 1 + C T STAD 32875256 + 32875236 32875276 41 TCAGCATTTGCTTGAGGAACGCTCACCTCTGCTTTTTACTC TCAGCATTTGCTTGAGGAATGCTCACCTCTGCTTTTTACTC < 41bp 0.52783468745312 0.729475916240322 NA NA prediction 0.403282457574405 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32875256 chr2:32875255 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_36976 0 0 0 0 2 TTC27 chr2:32875198 3'AG 32875198 Downstream 58bp 34012 chr2 32875255 32875255 1 + C T STAD 32875256 + 32875236 32875276 41 TCAGCATTTGCTTGAGGAACGCTCACCTCTGCTTTTTACTC TCAGCATTTGCTTGAGGAATGCTCACCTCTGCTTTTTACTC < 41bp 0.52783468745312 0.729475916240322 NA NA prediction 0.403282457574405 Functional Gain - TTC27 ENSG00000018699 CDS Human protein_coding chr2:32875256 chr2:32875255 nonsynonymous SNV 0.962 2 20 hm7G_associated_SNPs_36976 0 0 0 0 2 TTC27 chr2:32875300 5'GT 32875300 Upstream 46bp 34013 chr3 48420895 48420895 1 + C T UCEC 48420896 + 48420876 48420916 41 TGCTTTGGTTTCAGGTTGGCGATGCTGCAGGTGACATCTAC TGCTTTGGTTTCAGGTTGGTGATGCTGCAGGTGACATCTAC < 41bp 0.490168875712209 0.701640281670136 NA NA prediction 0.403280563340272 Functional Gain - FBXW12 ENSG00000164049 CDS Human protein_coding chr3:48420896 chr3:48420895 synonymous SNV . 0 20 hm7G_associated_SNPs_36977 0 0 0 0 1 FBXW12 chr3:48420890 3'AG 48420890 Downstream 6bp 34014 chr22 24584250 24584250 1 + C T COAD 24584251 + 24584231 24584271 41 GGCCTCGCGGTGGTGGCGGCGGTTGCGCTCGTCTATGTGCT GGCCTCGCGGTGGTGGCGGTGGTTGCGCTCGTCTATGTGCT < 41bp 0.535032709399699 0.736670916959615 NA NA prediction 0.403276415119831 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24584251 chr22:24584250 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36978 0 0 0 0 2 SUSD2 chr22:24584193 3'AG 24584193 Downstream 58bp 34015 chr22 24584250 24584250 1 + C T COAD 24584251 + 24584231 24584271 41 GGCCTCGCGGTGGTGGCGGCGGTTGCGCTCGTCTATGTGCT GGCCTCGCGGTGGTGGCGGTGGTTGCGCTCGTCTATGTGCT < 41bp 0.535032709399699 0.736670916959615 NA NA prediction 0.403276415119831 Functional Gain - SUSD2 ENSG00000099994 CDS Human protein_coding chr22:24584251 chr22:24584250 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_36978 0 0 0 0 2 SUSD2 chr22:24584295 5'GT 24584295 Upstream 46bp 34016 chr9 135919203 135919203 1 + C T UCEC 135919204 + 135919184 135919224 41 AGGTGCTCATGCTCCGGCCCGAGAAGGAGGCCTTTTTCCAC AGGTGCTCATGCTCCGGCCTGAGAAGGAGGCCTTTTTCCAC < 41bp 0.492259339663853 0.701634644417752 NA NA prediction 0.403269288835504 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919204 chr9:135919203 synonymous SNV . 0 20 hm7G_associated_SNPs_36981 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 89bp 34017 chr8 9634219 9634219 1 + C T CESC 9634220 + 9634200 9634240 41 CAGAAGCCCCTTCCCAGACCGCAACAGCCGCAGAGCAGAAG CAGAAGCCCCTTCCCAGACTGCAACAGCCGCAGAGCAGAAG < 41bp 0.531247364754684 0.73288061520489 NA NA prediction 0.403266500900413 Functional Gain - TNKS ENSG00000173273 CDS Human protein_coding chr8:9634220 chr8:9634219 synonymous SNV . 0 20 hm7G_associated_SNPs_36983 0 0 1 0 1 TNKS chr8:9634160 3'AG 9634160 Downstream 60bp 34018 chr20 43052754 43052754 1 + C T UCEC 43052755 + 43052735 43052775 41 AACGACCGCCAGTATGACTCGCGTGGCCGCTTTGGAGAGCT AACGACCGCCAGTATGACTTGCGTGGCCGCTTTGGAGAGCT < 41bp 0.536356806870657 0.73798943412696 NA NA prediction 0.403265254512606 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43052755 chr20:43052754 nonsynonymous SNV 0.490 1 20 hm7G_associated_SNPs_36985 0 0 1 0 1 HNF4A chr20:43052658 3'AG 43052658 Downstream 97bp 34019 chr2 190327291 190327291 1 + C T SKCM 190327292 + 190327272 190327312 41 AAGAATAAGGAGTTTCTCCCGCGTTTAGGAGCTACTATTGA AAGAATAAGGAGTTTCTCCTGCGTTTAGGAGCTACTATTGA < 41bp 0.538342317104859 0.739973437023955 NA NA prediction 0.403262239838192 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190327292 chr2:190327291 nonsynonymous SNV 0.868 4 20 hm7G_associated_SNPs_36986 0 0 1 0 2 WDR75 chr2:190327210 3'AG 190327210 Downstream 82bp 34020 chr2 190327291 190327291 1 + C T SKCM 190327292 + 190327272 190327312 41 AAGAATAAGGAGTTTCTCCCGCGTTTAGGAGCTACTATTGA AAGAATAAGGAGTTTCTCCTGCGTTTAGGAGCTACTATTGA < 41bp 0.538342317104859 0.739973437023955 NA NA prediction 0.403262239838192 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190327292 chr2:190327291 nonsynonymous SNV 0.868 4 20 hm7G_associated_SNPs_36986 0 0 1 0 2 WDR75 chr2:190327368 5'GT 190327368 Upstream 78bp 34021 chr9 101787237 101787237 1 + G A SKCM 101787238 + 101787218 101787258 41 TGTTTTCATGGGACCCCCTGGATCTCCTGGAGAGGATGGAC TGTTTTCATGGGACCCCCTAGATCTCCTGGAGAGGATGGAC < 41bp 0.497851601076043 0.70163015976486 NA NA prediction 0.403260319529721 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101787238 chr9:101787237 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_36987 0 0 0 0 1 COL15A1 chr9:101787281 5'GT 101787281 Upstream 45bp 34022 chr5 147498055 147498055 1 + G A SKCM 147498056 + 147498036 147498076 41 GGAAGACTCAGCTGTACTCGGGAGAGTGATCCTGTACGTGA GGAAGACTCAGCTGTACTCAGGAGAGTGATCCTGTACGTGA < 41bp 0.501656536235677 0.703286505511778 NA NA prediction 0.403259938552202 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498056 chr5:147498055 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_36988 0 0 0 0 2 SPINK5 chr5:147498000 3'AG 147498000 Downstream 56bp 34023 chr5 147498055 147498055 1 + G A SKCM 147498056 + 147498036 147498076 41 GGAAGACTCAGCTGTACTCGGGAGAGTGATCCTGTACGTGA GGAAGACTCAGCTGTACTCAGGAGAGTGATCCTGTACGTGA < 41bp 0.501656536235677 0.703286505511778 NA NA prediction 0.403259938552202 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147498056 chr5:147498055 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_36988 0 0 0 0 2 SPINK5 chr5:147498127 5'GT 147498127 Upstream 73bp 34024 chr4 156828921 156828921 1 + C T GBM 156828922 + 156828902 156828942 41 CTGGGAGTTGGATTCTGTTCGAGAGATCTTTCAGAATGGCC CTGGGAGTTGGATTCTGTTTGAGAGATCTTTCAGAATGGCC < 41bp 0.519334528970932 0.720964402486312 NA NA prediction 0.403259747030762 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156828922 chr4:156828921 stopgain 1.000 1 20 hm7G_associated_SNPs_36989 0 0 0 0 2 TDO2 chr4:156828874 3'AG 156828874 Downstream 48bp 34025 chr4 156828921 156828921 1 + C T GBM 156828922 + 156828902 156828942 41 CTGGGAGTTGGATTCTGTTCGAGAGATCTTTCAGAATGGCC CTGGGAGTTGGATTCTGTTTGAGAGATCTTTCAGAATGGCC < 41bp 0.519334528970932 0.720964402486312 NA NA prediction 0.403259747030762 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156828922 chr4:156828921 stopgain 1.000 1 20 hm7G_associated_SNPs_36989 0 0 0 0 2 TDO2 chr4:156828944 5'GT 156828944 Upstream 24bp 34026 chr15 39881531 39881531 1 + C T COAD 39881532 + 39881512 39881552 41 AGCCCTTCGGCCAGGGTGTCGAACATGCCACGGCCAACAAA AGCCCTTCGGCCAGGGTGTTGAACATGCCACGGCCAACAAA < 41bp 0.553286905625003 0.75491402744893 NA NA prediction 0.403254243647853 Functional Gain - THBS1 ENSG00000137801 CDS Human protein_coding chr15:39881532 chr15:39881531 synonymous SNV . 0 20 hm7G_associated_SNPs_36990 0 0 1 0 1 THBS1 chr15:39881555 5'GT 39881555 Upstream 25bp 34027 chr14 102910131 102910131 1 + C T SKCM 102910132 + 102910112 102910152 41 GGCGTGAGCAGCTTCTGTCCGGAAGGCGAGCAGTGGAAGTG GGCGTGAGCAGCTTCTGTCTGGAAGGCGAGCAGTGGAAGTG < 41bp 0.553346271939828 0.754972509081946 NA NA prediction 0.403252474284237 Functional Gain - TECPR2 ENSG00000196663 CDS Human protein_coding chr14:102910132 chr14:102910131 nonsynonymous SNV 0.915 3 20 hm7G_associated_SNPs_36991 0 0 1 0 1 TECPR2 chr14:102910164 5'GT 102910164 Upstream 34bp 34028 chr17 80765517 80765517 1 + C T UCEC 80765518 + 80765498 80765538 41 GGGCTGAAGGACAAGGACACGGTCGTGCGGTGGTCTGCAGC GGGCTGAAGGACAAGGACATGGTCGTGCGGTGGTCTGCAGC < 41bp 0.54546882630835 0.747092966410515 NA NA prediction 0.40324828020433 Functional Gain - TBCD ENSG00000141556 CDS Human protein_coding chr17:80765518 chr17:80765517 nonsynonymous SNV 0.533 4 20 hm7G_associated_SNPs_36993 0 0 1 0 2 TBCD chr17:80765484 3'AG 80765484 Downstream 34bp 34029 chr17 80765517 80765517 1 + C T UCEC 80765518 + 80765498 80765538 41 GGGCTGAAGGACAAGGACACGGTCGTGCGGTGGTCTGCAGC GGGCTGAAGGACAAGGACATGGTCGTGCGGTGGTCTGCAGC < 41bp 0.54546882630835 0.747092966410515 NA NA prediction 0.40324828020433 Functional Gain - TBCD ENSG00000141556 CDS Human protein_coding chr17:80765518 chr17:80765517 nonsynonymous SNV 0.533 4 20 hm7G_associated_SNPs_36993 0 0 1 0 2 TBCD chr17:80765544 5'GT 80765544 Upstream 28bp 34030 chr1 47283692 47283692 1 + C T LGG 47283693 + 47283673 47283713 41 GGAACAGTGCTGTATGGCCCGACCCTGAGGTACCCTTTCCC GGAACAGTGCTGTATGGCCTGACCCTGAGGTACCCTTTCCC < 41bp 0.501058136915941 0.702682168457251 NA NA prediction 0.403248063082621 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47283693 chr1:47283692 synonymous SNV . 0 20 hm7G_associated_SNPs_36994 0 0 0 0 2 CYP4B1 chr1:47283637 3'AG 47283637 Downstream 56bp 34031 chr1 47283692 47283692 1 + C T LGG 47283693 + 47283673 47283713 41 GGAACAGTGCTGTATGGCCCGACCCTGAGGTACCCTTTCCC GGAACAGTGCTGTATGGCCTGACCCTGAGGTACCCTTTCCC < 41bp 0.501058136915941 0.702682168457251 NA NA prediction 0.403248063082621 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47283693 chr1:47283692 synonymous SNV . 0 20 hm7G_associated_SNPs_36994 0 0 0 0 2 CYP4B1 chr1:47283701 5'GT 47283701 Upstream 10bp 34032 chr1 231402128 231402128 1 + C T COAD 231402129 + 231402109 231402149 41 GGCAGCTGGGAGGATGAGTCGGAGCTCATATAACTTGGTTC GGCAGCTGGGAGGATGAGTTGGAGCTCATATAACTTGGTTC < 41bp 0.547502566261422 0.749125383901456 NA NA prediction 0.403245635280068 Functional Gain - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231402129 chr1:231402128 nonsynonymous SNV 0.968 3 20 hm7G_associated_SNPs_36995 1 0 1 0 1 GNPAT chr1:231402153 5'GT 231402153 Upstream 26bp 34033 chr11 8115637 8115637 1 + C T PRAD 8115638 + 8115618 8115658 41 TGTGCAGCTGGGAGCCACGCGCCCAACAGCACCAGCTTCAG TGTGCAGCTGGGAGCCACGTGCCCAACAGCACCAGCTTCAG < 41bp 0.539761606831981 0.741384381933801 NA NA prediction 0.40324555020364 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8115638 chr11:8115637 nonsynonymous SNV 0.035 1 20 hm7G_associated_SNPs_36996 0 0 0 0 2 TUB chr11:8115593 3'AG 8115593 Downstream 45bp 34034 chr11 8115637 8115637 1 + C T PRAD 8115638 + 8115618 8115658 41 TGTGCAGCTGGGAGCCACGCGCCCAACAGCACCAGCTTCAG TGTGCAGCTGGGAGCCACGTGCCCAACAGCACCAGCTTCAG < 41bp 0.539761606831981 0.741384381933801 NA NA prediction 0.40324555020364 Functional Gain - TUB ENSG00000166402 CDS Human protein_coding chr11:8115638 chr11:8115637 nonsynonymous SNV 0.035 1 20 hm7G_associated_SNPs_36996 0 0 0 0 2 TUB chr11:8115736 5'GT 8115736 Upstream 100bp 34035 chr19 50148340 50148340 1 + C T ESCA 50148341 + 50148321 50148361 41 AGTCGGGGGAGGATCGGGGCGATGGTCCGCCAGACAGAGAC AGTCGGGGGAGGATCGGGGTGATGGTCCGCCAGACAGAGAC < 41bp 0.537697086229942 0.739319592507109 NA NA prediction 0.403245012554334 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50148341 chr19:50148340 synonymous SNV . 0 20 hm7G_associated_SNPs_36997 0 0 1 0 2 SCAF1 chr19:50148278 3'AG 50148278 Downstream 63bp 34036 chr19 50148340 50148340 1 + C T ESCA 50148341 + 50148321 50148361 41 AGTCGGGGGAGGATCGGGGCGATGGTCCGCCAGACAGAGAC AGTCGGGGGAGGATCGGGGTGATGGTCCGCCAGACAGAGAC < 41bp 0.537697086229942 0.739319592507109 NA NA prediction 0.403245012554334 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50148341 chr19:50148340 synonymous SNV . 0 20 hm7G_associated_SNPs_36997 0 0 1 0 2 SCAF1 chr19:50148391 5'GT 50148391 Upstream 52bp 34037 chr19 4428733 4428733 1 + C T UCEC 4428734 + 4428714 4428754 41 GGTCCTGGCCCCTCGGCGTCGGACCGCTTTCCATCCAGACC GGTCCTGGCCCCTCGGCGTTGGACCGCTTTCCATCCAGACC < 41bp 0.484872091214062 0.701621818844609 NA NA prediction 0.403243637689217 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4428734 chr19:4428733 nonsynonymous SNV 0.006 3 20 hm7G_associated_SNPs_36998 0 0 1 0 1 CHAF1A chr19:4428661 3'AG 4428661 Downstream 73bp 34038 chr6 43223505 43223505 1 + C T UCEC 43223506 + 43223486 43223526 41 CAAGGAGAAGTATGAGCACCGGATGCTGCTGAAGCACATGC CAAGGAGAAGTATGAGCACTGGATGCTGCTGAAGCACATGC < 41bp 0.555019626816188 0.756639426423865 NA NA prediction 0.403239599215355 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43223506 chr6:43223505 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36999 0 0 0 0 2 TTBK1 chr6:43223469 3'AG 43223469 Downstream 37bp 34039 chr6 43223505 43223505 1 + C T UCEC 43223506 + 43223486 43223526 41 CAAGGAGAAGTATGAGCACCGGATGCTGCTGAAGCACATGC CAAGGAGAAGTATGAGCACTGGATGCTGCTGAAGCACATGC < 41bp 0.555019626816188 0.756639426423865 NA NA prediction 0.403239599215355 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43223506 chr6:43223505 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_36999 0 0 0 0 2 TTBK1 chr6:43223594 5'GT 43223594 Upstream 90bp 34040 chr17 36881192 36881192 1 + C T UCEC 36881193 + 36881173 36881213 41 AACCCCTTCCTCAGCCTGTCGGGAGCAGAGGGCAGTGGCGG AACCCCTTCCTCAGCCTGTTGGGAGCAGAGGGCAGTGGCGG < 41bp 0.496594530334069 0.701619355124328 NA NA prediction 0.403238710248657 Functional Gain - MLLT6 ENSG00000108292 CDS Human other chr17:36881193 chr17:36881192 nonsynonymous SNV 0.814 0 20 hm7G_associated_SNPs_37000 0 0 1 0 1 MLLT6 chr17:36881229 5'GT 36881229 Upstream 38bp 34041 chr9 115421602 115421602 1 + C T UCEC 115421603 + 115421583 115421623 41 ATGTCACCGTCAAGAAGAGCGACGGCTCGGACTTCCTGGCC ATGTCACCGTCAAGAAGAGTGACGGCTCGGACTTCCTGGCC < 41bp 0.51891255022187 0.720531842089567 NA NA prediction 0.403238583735394 Functional Gain - KIAA1958 ENSG00000165185 CDS Human protein_coding chr9:115421603 chr9:115421602 synonymous SNV . 0 20 hm7G_associated_SNPs_37001 0 0 1 0 1 KIAA1958 chr9:115421543 3'AG 115421543 Downstream 60bp 34042 chr11 73074474 73074474 1 + C T UCEC 73074475 + 73074455 73074495 41 CTGAGGCCTACCAGAGCTCCGTGTGGCTGGGCACTGAGGAT CTGAGGCCTACCAGAGCTCTGTGTGGCTGGGCACTGAGGAT < 41bp 0.497897559535475 0.701614069096441 NA NA prediction 0.403228138192882 Functional Gain - ARHGEF17 ENSG00000110237 CDS Human protein_coding chr11:73074475 chr11:73074474 synonymous SNV . 0 20 hm7G_associated_SNPs_37005 0 0 1 0 1 ARHGEF17 chr11:73074500 5'GT 73074500 Upstream 27bp 34043 chr9 90265000 90265000 1 + C T COAD 90265001 + 90264981 90265021 41 ACATCGTGGAGTGTCTGGCCGAACATGGAGCCGACCTTAAT ACATCGTGGAGTGTCTGGCTGAACATGGAGCCGACCTTAAT < 41bp 0.558576830802399 0.760190019134152 NA NA prediction 0.403226376663504 Functional Gain - DAPK1 ENSG00000196730 CDS Human protein_coding chr9:90265001 chr9:90265000 synonymous SNV . 0 20 hm7G_associated_SNPs_37006 0 0 1 0 1 DAPK1 chr9:90265033 5'GT 90265033 Upstream 34bp 34044 chr18 74632003 74632003 1 + C T rs191094827 74632004 + 74631984 74632024 41 AGAGCTTCAAGAAACCTAGCGACCTGGTGAGGTGAGGGCAT AGAGCTTCAAGAAACCTAGTGACCTGGTGAGGTGAGGGCAT < 41bp 0.515300392642888 0.716911858494058 NA NA prediction 0.40322293170234 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74632004 chr18:74632003 synonymous SNV . 0 20 hm7G_associated_SNPs_37008 0 0 0 0 1 ZNF236 chr18:74632014 5'GT 74632014 Upstream 12bp 34045 chr11 65413812 65413812 1 + C T UCEC 65413813 + 65413793 65413833 41 GCACGTGTTCCTAGTGGTGCGGGCACACACACCCTGCACGC GCACGTGTTCCTAGTGGTGTGGGCACACACACCCTGCACGC < 41bp 0.532760572007951 0.734370629640186 NA NA prediction 0.403220115264469 Functional Gain - SIPA1 ENSG00000213445 CDS Human protein_coding chr11:65413813 chr11:65413812 nonsynonymous SNV 0.789 3 20 hm7G_associated_SNPs_37009 0 0 1 0 1 SIPA1 chr11:65413849 5'GT 65413849 Upstream 38bp 34046 chrX 152815654 152815654 1 + C T UCEC 152815655 + 152815635 152815675 41 AAAGTGTACACCTTCAACTCGGTCCGCAAGTCCATGAGCAC AAAGTGTACACCTTCAACTTGGTCCGCAAGTCCATGAGCAC < 41bp 0.558637138865073 0.760243456672913 NA NA prediction 0.40321263561568 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152815655 chrX:152815654 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_37011 0 0 0 0 1 ATP2B3 chrX:152815744 5'GT 152815744 Upstream 91bp 34047 chr11 134182351 134182351 1 + C T COAD 134182352 + 134182332 134182372 41 GTCCATCTGCTCCGGAGGCCGCCTCCGTGCCCACGCTCATG GTCCATCTGCTCCGGAGGCTGCCTCCGTGCCCACGCTCATG < 41bp 0.532069544010955 0.733675276896075 NA NA prediction 0.40321146577024 Functional Gain - GLB1L3 ENSG00000166105 CDS Human protein_coding chr11:134182352 chr11:134182351 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_37012 0 0 0 0 1 GLB1L3 chr11:134182383 5'GT 134182383 Upstream 33bp 34048 chr5 5186274 5186274 1 + C T COAD 5186275 + 5186255 5186295 41 ATAGAAATGAAGAACTGAACGTGGAGACCTTGGTGGTGGTC ATAGAAATGAAGAACTGAATGTGGAGACCTTGGTGGTGGTC < 41bp 0.534630876316042 0.736235710600166 NA NA prediction 0.403209668568248 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5186275 chr5:5186274 synonymous SNV . 0 20 hm7G_associated_SNPs_37013 0 0 0 0 1 ADAMTS16 chr5:5186364 5'GT 5186364 Upstream 91bp 34049 chrX 10035515 10035515 1 + C T UCEC 10035516 + 10035496 10035536 41 AATGTGTGAGGATGACAGCCGCTCGTACGCCAGCTGTGAGT AATGTGTGAGGATGACAGCTGCTCGTACGCCAGCTGTGAGT < 41bp 0.495637994104169 0.701603476086911 NA NA prediction 0.403206952173822 Functional Gain - WWC3 ENSG00000047644 CDS Human protein_coding chrX:10035516 chrX:10035515 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_37015 0 0 0 0 1 WWC3 chrX:10035530 5'GT 10035530 Upstream 16bp 34050 chr12 32871622 32871622 1 + C T LGG 32871623 + 32871603 32871643 41 AAACTTGATCTCATGGATGCGGGTACTGATGCCATGGATGT AAACTTGATCTCATGGATGTGGGTACTGATGCCATGGATGT < 41bp 0.531249384709325 0.732852742659709 NA NA prediction 0.403206715900769 Functional Gain - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32871623 chr12:32871622 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_37017 0 0 1 1 2 DNM1L chr12:32871577 3'AG 32871577 Downstream 46bp 34051 chr12 32871622 32871622 1 + C T LGG 32871623 + 32871603 32871643 41 AAACTTGATCTCATGGATGCGGGTACTGATGCCATGGATGT AAACTTGATCTCATGGATGTGGGTACTGATGCCATGGATGT < 41bp 0.531249384709325 0.732852742659709 NA NA prediction 0.403206715900769 Functional Gain - DNM1L ENSG00000087470 CDS Human protein_coding chr12:32871623 chr12:32871622 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_37017 0 0 1 1 2 DNM1L chr12:32871697 5'GT 32871697 Upstream 76bp 34052 chr17 72278136 72278136 1 + C T UCEC 72278137 + 72278117 72278157 41 CGATCAGCATGTCGGAACACGAGGTGGGTCCCTGCCCCAAG CGATCAGCATGTCGGAACATGAGGTGGGTCCCTGCCCCAAG < 41bp 0.509879884151854 0.711482050364353 NA NA prediction 0.403204332424997 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72278137 chr17:72278136 synonymous SNV . 0 20 hm7G_associated_SNPs_37018 0 0 0 0 1 DNAI2 chr17:72278139 5'GT 72278139 Upstream 4bp 34053 chr8 99169913 99169913 1 + G A UCEC 99169914 + 99169894 99169934 41 GAGGATAGTCGGGGAGGCCGGCGAGCTCCCGGCAGAGGCCA GAGGATAGTCGGGGAGGCCAGCGAGCTCCCGGCAGAGGCCA < 41bp 0.56745070495751 0.769052140008954 NA NA prediction 0.403202870102888 Functional Gain - POP1 ENSG00000104356 CDS Human protein_coding chr8:99169914 chr8:99169913 nonsynonymous SNV 0.047 0 20 hm7G_associated_SNPs_37019 0 0 1 0 1 POP1 chr8:99169845 3'AG 99169845 Downstream 69bp 34054 chr22 20128179 20128179 1 + C T SKCM 20128180 + 20128160 20128200 41 GGGTGTGAACCCTTTCACCCGAGGCTGCTGTGGGAATGTGG GGGTGTGAACCCTTTCACCTGAGGCTGCTGTGGGAATGTGG < 41bp 0.552764672187847 0.754365154773878 NA NA prediction 0.403200965172061 Functional Gain - ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20128180 chr22:20128179 stopgain 0.998 1 20 hm7G_associated_SNPs_37020 0 0 1 0 2 ZDHHC8 chr22:20128140 3'AG 20128140 Downstream 40bp 34055 chr22 20128179 20128179 1 + C T SKCM 20128180 + 20128160 20128200 41 GGGTGTGAACCCTTTCACCCGAGGCTGCTGTGGGAATGTGG GGGTGTGAACCCTTTCACCTGAGGCTGCTGTGGGAATGTGG < 41bp 0.552764672187847 0.754365154773878 NA NA prediction 0.403200965172061 Functional Gain - ZDHHC8 ENSG00000099904 CDS Human protein_coding chr22:20128180 chr22:20128179 stopgain 0.998 1 20 hm7G_associated_SNPs_37020 0 0 1 0 2 ZDHHC8 chr22:20128231 5'GT 20128231 Upstream 53bp 34056 chr3 14508095 14508095 1 + G A rs561563380 14508096 + 14508076 14508116 41 TCCGAGGGCTGACGCTGCCGGGCGCGGGCGCAGGCATCAAG TCCGAGGGCTGACGCTGCCAGGCGCGGGCGCAGGCATCAAG < 41bp 0.56312673792793 0.764725408792752 NA NA prediction 0.403197341729644 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508096 chr3:14508095 synonymous SNV . 0 20 hm7G_associated_SNPs_37023 0 0 1 0 2 SLC6A6 chr3:14508024 3'AG 14508024 Downstream 72bp 34057 chr3 14508095 14508095 1 + G A rs561563380 14508096 + 14508076 14508116 41 TCCGAGGGCTGACGCTGCCGGGCGCGGGCGCAGGCATCAAG TCCGAGGGCTGACGCTGCCAGGCGCGGGCGCAGGCATCAAG < 41bp 0.56312673792793 0.764725408792752 NA NA prediction 0.403197341729644 Functional Gain - SLC6A6 ENSG00000131389 CDS Human protein_coding chr3:14508096 chr3:14508095 synonymous SNV . 0 20 hm7G_associated_SNPs_37023 0 0 1 0 2 SLC6A6 chr3:14508158 5'GT 14508158 Upstream 64bp 34058 chr8 124146369 124146369 1 + C T COAD 124146370 + 124146350 124146390 41 ATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCCA ATAGGTATATATGAGAGATTGAGAAATTGCTGCCACAGCCA < 41bp 0.498598454683493 0.701598574350916 NA NA prediction 0.403197148701832 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146370 chr8:124146369 stopgain 0.987 0 20 hm7G_associated_SNPs_37024 0 0 1 0 2 TBC1D31 chr8:124146354 3'AG 124146354 Downstream 16bp 34059 chr8 124146369 124146369 1 + C T COAD 124146370 + 124146350 124146390 41 ATAGGTATATATGAGAGATCGAGAAATTGCTGCCACAGCCA ATAGGTATATATGAGAGATTGAGAAATTGCTGCCACAGCCA < 41bp 0.498598454683493 0.701598574350916 NA NA prediction 0.403197148701832 Functional Gain - TBC1D31 ENSG00000156787 CDS Human protein_coding chr8:124146370 chr8:124146369 stopgain 0.987 0 20 hm7G_associated_SNPs_37024 0 0 1 0 2 TBC1D31 chr8:124146446 5'GT 124146446 Upstream 78bp 34060 chr17 7749921 7749921 1 + C T LIHC 7749922 + 7749902 7749942 41 ACGGAACTATGGAGCCAAGCGGGGAGGTCCCCCGGTGAAGC ACGGAACTATGGAGCCAAGTGGGGAGGTCCCCCGGTGAAGC < 41bp 0.533426280246997 0.735024652304421 NA NA prediction 0.403196744114848 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7749922 chr17:7749921 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_37025 0 0 1 0 1 KDM6B chr17:7749897 3'AG 7749897 Downstream 25bp 34061 chr22 25301096 25301096 1 + C T COAD 25301097 + 25301077 25301117 41 TCTGGCAGCACATTGAGATCGGCTATGTCCAGGGCATGTGT TCTGGCAGCACATTGAGATTGGCTATGTCCAGGGCATGTGT < 41bp 0.538172868751002 0.739771050844961 NA NA prediction 0.403196364187917 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25301097 chr22:25301096 synonymous SNV . 0 20 hm7G_associated_SNPs_37026 0 0 0 0 2 SGSM1 chr22:25301072 3'AG 25301072 Downstream 25bp 34062 chr22 25301096 25301096 1 + C T COAD 25301097 + 25301077 25301117 41 TCTGGCAGCACATTGAGATCGGCTATGTCCAGGGCATGTGT TCTGGCAGCACATTGAGATTGGCTATGTCCAGGGCATGTGT < 41bp 0.538172868751002 0.739771050844961 NA NA prediction 0.403196364187917 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25301097 chr22:25301096 synonymous SNV . 0 20 hm7G_associated_SNPs_37026 0 0 0 0 2 SGSM1 chr22:25301154 5'GT 25301154 Upstream 59bp 34063 chr21 47402660 47402660 1 + C T UCEC 47402661 + 47402641 47402681 41 CCTTCACCAAGCGCTTCATCGACAACCTGAGGGACAGGTAG CCTTCACCAAGCGCTTCATTGACAACCTGAGGGACAGGTAG < 41bp 0.525606043622978 0.727203655741597 NA NA prediction 0.403195224237237 Functional Gain - COL6A1 ENSG00000142156 CDS Human protein_coding chr21:47402661 chr21:47402660 synonymous SNV . 0 20 hm7G_associated_SNPs_37027 0 0 1 0 1 COL6A1 chr21:47402677 5'GT 47402677 Upstream 18bp 34064 chr16 72107824 72107824 1 + G A SKCM 72107825 + 72107805 72107845 41 TCATTTCCCTCCTGCTCTGGGGACGACAGCTTTTTGCACTG TCATTTCCCTCCTGCTCTGAGGACGACAGCTTTTTGCACTG < 41bp 0.557612307099766 0.759209463064738 NA NA prediction 0.403194311929945 Functional Gain - HPR ENSG00000261701 CDS Human protein_coding chr16:72107825 chr16:72107824 stopgain 0.458 0 20 hm7G_associated_SNPs_37028 0 0 1 0 2 HPR chr16:72107791 3'AG 72107791 Downstream 34bp 34065 chr16 72107824 72107824 1 + G A SKCM 72107825 + 72107805 72107845 41 TCATTTCCCTCCTGCTCTGGGGACGACAGCTTTTTGCACTG TCATTTCCCTCCTGCTCTGAGGACGACAGCTTTTTGCACTG < 41bp 0.557612307099766 0.759209463064738 NA NA prediction 0.403194311929945 Functional Gain - HPR ENSG00000261701 CDS Human protein_coding chr16:72107825 chr16:72107824 stopgain 0.458 0 20 hm7G_associated_SNPs_37028 0 0 1 0 2 HPR chr16:72107876 5'GT 72107876 Upstream 53bp 34066 chr2 108910768 108910768 1 + C T GBM 108910769 + 108910749 108910789 41 GCGAGCCATCATCCAACACCGCCATCCTTTCATTGAGTGGG GCGAGCCATCATCCAACACTGCCATCCTTTCATTGAGTGGG < 41bp 0.489895372119947 0.701597043488977 NA NA prediction 0.403194086977954 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910769 chr2:108910768 nonsynonymous SNV 0.961 5 20 hm7G_associated_SNPs_37029 0 0 0 0 2 SULT1C2 chr2:108910685 3'AG 108910685 Downstream 84bp 34067 chr2 108910768 108910768 1 + C T GBM 108910769 + 108910749 108910789 41 GCGAGCCATCATCCAACACCGCCATCCTTTCATTGAGTGGG GCGAGCCATCATCCAACACTGCCATCCTTTCATTGAGTGGG < 41bp 0.489895372119947 0.701597043488977 NA NA prediction 0.403194086977954 Functional Gain - SULT1C2 ENSG00000198203 CDS Human protein_coding chr2:108910769 chr2:108910768 nonsynonymous SNV 0.961 5 20 hm7G_associated_SNPs_37029 0 0 0 0 2 SULT1C2 chr2:108910810 5'GT 108910810 Upstream 43bp 34068 chr20 25261593 25261593 1 + C T STAD 25261594 + 25261574 25261614 41 TTTGGCACCAGCACGTGGCCGCGCTGTTTCCCGGCGATGTG TTTGGCACCAGCACGTGGCTGCGCTGTTTCCCGGCGATGTG < 41bp 0.541658998722486 0.743255837333273 NA NA prediction 0.403193677221574 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25261594 chr20:25261593 synonymous SNV . 0 20 hm7G_associated_SNPs_37030 0 0 1 0 1 PYGB chr20:25261585 3'AG 25261585 Downstream 9bp 34069 chr11 120298810 120298810 1 + C T STAD 120298811 + 120298791 120298831 41 AGCTCTCACTGTTCAGGGACGCCCACCTGGGTCGCCCCAGA AGCTCTCACTGTTCAGGGATGCCCACCTGGGTCGCCCCAGA < 41bp 0.534478089901934 0.736073873480456 NA NA prediction 0.403191567157045 Functional Gain - ARHGEF12 ENSG00000196914 CDS Human protein_coding chr11:120298811 chr11:120298810 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37032 0 0 1 0 1 ARHGEF12 chr11:120298778 3'AG 120298778 Downstream 33bp 34070 chr6 43112987 43112987 1 + G A KIRP 43112988 + 43112968 43113008 41 CAAAGGCTCAGGGCTTGGAGGAGGGAGTGGCAGAGACCCTG CAAAGGCTCAGGGCTTGGAAGAGGGAGTGGCAGAGACCCTG < 41bp 0.505162786279373 0.706757461270625 NA NA prediction 0.403189349982504 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43112988 chr6:43112987 synonymous SNV . 0 20 hm7G_associated_SNPs_37033 0 0 1 0 2 PTK7 chr6:43112938 3'AG 43112938 Downstream 50bp 34071 chr6 43112987 43112987 1 + G A KIRP 43112988 + 43112968 43113008 41 CAAAGGCTCAGGGCTTGGAGGAGGGAGTGGCAGAGACCCTG CAAAGGCTCAGGGCTTGGAAGAGGGAGTGGCAGAGACCCTG < 41bp 0.505162786279373 0.706757461270625 NA NA prediction 0.403189349982504 Functional Gain - PTK7 ENSG00000112655 CDS Human protein_coding chr6:43112988 chr6:43112987 synonymous SNV . 0 20 hm7G_associated_SNPs_37033 0 0 1 0 2 PTK7 chr6:43112958 3'AG 43112958 Downstream 30bp 34072 chr15 92706011 92706011 1 + C T SKCM 92706012 + 92705992 92706032 41 TCCCTCCACCCCTCATCTTCGGGGCTGGCATCGACTCCACC TCCCTCCACCCCTCATCTTTGGGGCTGGCATCGACTCCACC < 41bp 0.514317056862018 0.71591173021823 NA NA prediction 0.403189346712423 Functional Gain - SLCO3A1 ENSG00000176463 CDS Human protein_coding chr15:92706012 chr15:92706011 synonymous SNV . 0 20 hm7G_associated_SNPs_37034 0 0 1 0 1 SLCO3A1 chr15:92705986 3'AG 92705986 Downstream 26bp 34073 chr8 21862534 21862534 1 + C T SKCM 21862535 + 21862515 21862555 41 GAACCTGTCAGCATTCCGTCGAGAAGTCAACGACTCAATGA GAACCTGTCAGCATTCCGTTGAGAAGTCAACGACTCAATGA < 41bp 0.504683587068509 0.706278030921736 NA NA prediction 0.403188887706456 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21862535 chr8:21862534 stopgain 1.000 1 20 hm7G_associated_SNPs_37035 0 0 1 0 1 XPO7 chr8:21862506 3'AG 21862506 Downstream 29bp 34074 chr16 57691305 57691305 1 + C T STAD 57691306 + 57691286 57691326 41 TCTCCTCGGTGGAGGTGGACGCCGTGCACAAGCACTACCTG TCTCCTCGGTGGAGGTGGATGCCGTGCACAAGCACTACCTG < 41bp 0.519272041397062 0.720865677925136 NA NA prediction 0.403187273056147 Functional Gain - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57691306 chr16:57691305 synonymous SNV . 0 20 hm7G_associated_SNPs_37036 0 0 1 0 2 ADGRG1 chr16:57691285 3'AG 57691285 Downstream 21bp 34075 chr16 57691305 57691305 1 + C T STAD 57691306 + 57691286 57691326 41 TCTCCTCGGTGGAGGTGGACGCCGTGCACAAGCACTACCTG TCTCCTCGGTGGAGGTGGATGCCGTGCACAAGCACTACCTG < 41bp 0.519272041397062 0.720865677925136 NA NA prediction 0.403187273056147 Functional Gain - ADGRG1 ENSG00000205336 CDS Human protein_coding chr16:57691306 chr16:57691305 synonymous SNV . 0 20 hm7G_associated_SNPs_37036 0 0 1 0 2 ADGRG1 chr16:57691403 5'GT 57691403 Upstream 99bp 34076 chr16 68349902 68349902 1 + G A rs566483423 68349903 + 68349883 68349923 41 ATGAAGATCTTCTGCAGTCGGGCCAATCCGACCACGGGGTC ATGAAGATCTTCTGCAGTCAGGCCAATCCGACCACGGGGTC < 41bp 0.562339907403161 0.763931941328213 NA NA prediction 0.403184067850102 Functional Gain - PRMT7 ENSG00000132600 CDS Human protein_coding chr16:68349903 chr16:68349902 nonsynonymous SNV 0.273 1 20 hm7G_associated_SNPs_37037 0 0 1 0 1 PRMT7 chr16:68349977 5'GT 68349977 Upstream 76bp 34077 chr11 64366349 64366349 1 + C T rs548145636 64366350 + 64366330 64366370 41 CAGCCTGGGCACCCTGCTCCGCATGCCCGGACTGCGCTTCC CAGCCTGGGCACCCTGCTCTGCATGCCCGGACTGCGCTTCC < 41bp 0.535543640729752 0.73713345416995 NA NA prediction 0.403179626880396 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64366350 chr11:64366349 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_37040 0 0 0 0 1 SLC22A12 chr11:64366280 3'AG 64366280 Downstream 70bp 34078 chr16 1825080 1825080 1 + C T PRAD 1825081 + 1825061 1825101 41 GGGTGCCCTGGATCTCCCCCGAGACCACCGCCCGGCCCCAC GGGTGCCCTGGATCTCCCCTGAGACCACCGCCCGGCCCCAC < 41bp 0.505887640142812 0.707474999906407 NA NA prediction 0.40317471952719 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825081 chr16:1825080 synonymous SNV . 0 20 hm7G_associated_SNPs_37041 0 0 1 0 2 EME2 chr16:1825042 3'AG 1825042 Downstream 39bp 34079 chr16 1825080 1825080 1 + C T PRAD 1825081 + 1825061 1825101 41 GGGTGCCCTGGATCTCCCCCGAGACCACCGCCCGGCCCCAC GGGTGCCCTGGATCTCCCCTGAGACCACCGCCCGGCCCCAC < 41bp 0.505887640142812 0.707474999906407 NA NA prediction 0.40317471952719 Functional Gain - EME2 ENSG00000197774 CDS Human protein_coding chr16:1825081 chr16:1825080 synonymous SNV . 0 20 hm7G_associated_SNPs_37041 0 0 1 0 2 EME2 chr16:1825133 5'GT 1825133 Upstream 54bp 34080 chr15 44788617 44788617 1 + C T rs871923 44788618 + 44788598 44788638 41 GGTTATTCATCAGCCCACGCGGAGGCCACCTATGAAGAAGA GGTTATTCATCAGCCCACGTGGAGGCCACCTATGAAGAAGA < 41bp 0.483824130594633 0.701586152409834 NA NA prediction 0.403172304819668 Functional Gain - CTDSPL2 ENSG00000137770 CDS Human protein_coding chr15:44788618 chr15:44788617 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_37042 0 0 1 0 2 CTDSPL2 chr15:44788578 3'AG 44788578 Downstream 40bp 34081 chr15 44788617 44788617 1 + C T rs871923 44788618 + 44788598 44788638 41 GGTTATTCATCAGCCCACGCGGAGGCCACCTATGAAGAAGA GGTTATTCATCAGCCCACGTGGAGGCCACCTATGAAGAAGA < 41bp 0.483824130594633 0.701586152409834 NA NA prediction 0.403172304819668 Functional Gain - CTDSPL2 ENSG00000137770 CDS Human protein_coding chr15:44788618 chr15:44788617 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_37042 0 0 1 0 2 CTDSPL2 chr15:44788656 5'GT 44788656 Upstream 40bp 34082 chr15 77750837 77750837 1 + G A UCEC 77750838 + 77750818 77750858 41 TAATGATCTGGCTACCACTGGGTAAGCAGCTGCTTTAGGAC TAATGATCTGGCTACCACTAGGTAAGCAGCTGCTTTAGGAC < 41bp 0.505112004216982 0.706697070812496 NA NA prediction 0.403170133191027 Functional Gain - HMG20A ENSG00000140382 CDS Human protein_coding chr15:77750838 chr15:77750837 nonsynonymous SNV 0.935 2 20 hm7G_associated_SNPs_37044 0 0 1 0 2 HMG20A chr15:77750746 3'AG 77750746 Downstream 92bp 34083 chr15 77750837 77750837 1 + G A UCEC 77750838 + 77750818 77750858 41 TAATGATCTGGCTACCACTGGGTAAGCAGCTGCTTTAGGAC TAATGATCTGGCTACCACTAGGTAAGCAGCTGCTTTAGGAC < 41bp 0.505112004216982 0.706697070812496 NA NA prediction 0.403170133191027 Functional Gain - HMG20A ENSG00000140382 CDS Human protein_coding chr15:77750838 chr15:77750837 nonsynonymous SNV 0.935 2 20 hm7G_associated_SNPs_37044 0 0 1 0 2 HMG20A chr15:77750838 5'GT 77750838 Upstream 2bp 34084 chr19 18966824 18966824 1 + C T rs150324027 18966825 + 18966805 18966845 41 TAAAGGTCGTGCGCCTCTGCGCCAAGAGCCGTGAGGCCATC TAAAGGTCGTGCGCCTCTGTGCCAAGAGCCGTGAGGCCATC < 41bp 0.544570708351004 0.746154423897775 NA NA prediction 0.403167431093542 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966825 chr19:18966824 synonymous SNV . 0 20 hm7G_associated_SNPs_37045 0 0 1 0 2 UPF1 chr19:18966734 3'AG 18966734 Downstream 91bp 34085 chr19 18966824 18966824 1 + C T rs150324027 18966825 + 18966805 18966845 41 TAAAGGTCGTGCGCCTCTGCGCCAAGAGCCGTGAGGCCATC TAAAGGTCGTGCGCCTCTGTGCCAAGAGCCGTGAGGCCATC < 41bp 0.544570708351004 0.746154423897775 NA NA prediction 0.403167431093542 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966825 chr19:18966824 synonymous SNV . 0 20 hm7G_associated_SNPs_37045 0 0 1 0 2 UPF1 chr19:18966898 5'GT 18966898 Upstream 75bp 34086 chr7 150710874 150710874 1 + C T COAD 150710875 + 150710855 150710895 41 TGCACCGCGTGCTGTGCCTCGAGCGGGGCCACATGTTTGTC TGCACCGCGTGCTGTGCCTTGAGCGGGGCCACATGTTTGTC < 41bp 0.516816675239887 0.718400029136518 NA NA prediction 0.403166707793263 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150710875 chr7:150710874 synonymous SNV . 0 20 hm7G_associated_SNPs_37046 0 0 0 0 1 NOS3 chr7:150710812 3'AG 150710812 Downstream 63bp 34087 chr1 206650044 206650044 1 + G A TGCT 206650045 + 206650025 206650065 41 CCGACATGTATGAGCGGGCGGTGCTTCGAAAGCCCCAGCAA CCGACATGTATGAGCGGGCAGTGCTTCGAAAGCCCCAGCAA < 41bp 0.568610303900526 0.770193306525627 NA NA prediction 0.403166005250201 Functional Gain - IKBKE ENSG00000143466 CDS Human other chr1:206650045 chr1:206650044 synonymous SNV . 0 20 hm7G_associated_SNPs_37047 0 0 0 0 1 IKBKE chr1:206650021 3'AG 206650021 Downstream 24bp 34088 chr16 31409184 31409184 1 + G T LUAD 31409185 + 31409165 31409205 41 AGGGTTCCTGCCTCCTGCTGGGCTCGCGCTGGGAGATCATC AGGGTTCCTGCCTCCTGCTTGGCTCGCGCTGGGAGATCATC < 41bp 0.334455494132803 0.701582946884702 NA NA prediction 0.403165893769404 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31409185 chr16:31409184 synonymous SNV . 0 20 hm7G_associated_SNPs_37048 0 0 0 0 2 ITGAD chr16:31409116 3'AG 31409116 Downstream 69bp 34089 chr16 31409184 31409184 1 + G T LUAD 31409185 + 31409165 31409205 41 AGGGTTCCTGCCTCCTGCTGGGCTCGCGCTGGGAGATCATC AGGGTTCCTGCCTCCTGCTTGGCTCGCGCTGGGAGATCATC < 41bp 0.334455494132803 0.701582946884702 NA NA prediction 0.403165893769404 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31409185 chr16:31409184 synonymous SNV . 0 20 hm7G_associated_SNPs_37048 0 0 0 0 2 ITGAD chr16:31409230 5'GT 31409230 Upstream 47bp 34090 chr2 131103480 131103480 1 + G A rs142119617 131103481 + 131103461 131103501 41 GCCCCACCTCATCACACACGGCTTCTCCTCCCGCCTGGGCA GCCCCACCTCATCACACACAGCTTCTCCTCCCGCCTGGGCA < 41bp 0.591554374144157 0.793136171177589 NA NA prediction 0.403163594066864 Functional Gain - IMP4 ENSG00000136718 CDS Human protein_coding chr2:131103481 chr2:131103480 nonsynonymous SNV 0.900 2 20 hm7G_associated_SNPs_37050 0 0 1 0 1 IMP4 chr2:131103506 5'GT 131103506 Upstream 27bp 34091 chr1 95303364 95303364 1 + C T UCEC 95303365 + 95303345 95303385 41 TGATGTTGACACCCTCCACCGAATTCTAAGTGGAATCATGT TGATGTTGACACCCTCCACTGAATTCTAAGTGGAATCATGT < 41bp 0.543021522042749 0.744603236585386 NA NA prediction 0.403163429085274 Functional Gain - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95303365 chr1:95303364 stopgain 0.939 0 20 hm7G_associated_SNPs_37051 0 0 0 0 2 SLC44A3 chr1:95303267 3'AG 95303267 Downstream 98bp 34092 chr1 95303364 95303364 1 + C T UCEC 95303365 + 95303345 95303385 41 TGATGTTGACACCCTCCACCGAATTCTAAGTGGAATCATGT TGATGTTGACACCCTCCACTGAATTCTAAGTGGAATCATGT < 41bp 0.543021522042749 0.744603236585386 NA NA prediction 0.403163429085274 Functional Gain - SLC44A3 ENSG00000143036 CDS Human protein_coding chr1:95303365 chr1:95303364 stopgain 0.939 0 20 hm7G_associated_SNPs_37051 0 0 0 0 2 SLC44A3 chr1:95303427 5'GT 95303427 Upstream 64bp 34093 chr2 27147850 27147850 1 + G A PRAD 27147851 + 27147831 27147871 41 ATGAGAAGTGCCGAGGTCTGGCCGACCCCAAGGTCTGCTGT ATGAGAAGTGCCGAGGTCTAGCCGACCCCAAGGTCTGCTGT < 41bp 0.474514678716487 0.701579761191246 NA NA prediction 0.403159522382493 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27147851 chr2:27147850 synonymous SNV . 0 20 hm7G_associated_SNPs_37053 0 0 1 0 2 DPYSL5 chr2:27147755 3'AG 27147755 Downstream 96bp 34094 chr2 27147850 27147850 1 + G A PRAD 27147851 + 27147831 27147871 41 ATGAGAAGTGCCGAGGTCTGGCCGACCCCAAGGTCTGCTGT ATGAGAAGTGCCGAGGTCTAGCCGACCCCAAGGTCTGCTGT < 41bp 0.474514678716487 0.701579761191246 NA NA prediction 0.403159522382493 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27147851 chr2:27147850 synonymous SNV . 0 20 hm7G_associated_SNPs_37053 0 0 1 0 2 DPYSL5 chr2:27147913 5'GT 27147913 Upstream 64bp 34095 chr10 70856931 70856931 1 + C T UCEC 70856932 + 70856912 70856952 41 AAGAAAAAGGACCAATGTTCGAACTACTTCCAGGTGAATCC AAGAAAAAGGACCAATGTTTGAACTACTTCCAGGTGAATCC < 41bp 0.517455372992599 0.719034363055957 NA NA prediction 0.403157980126716 Functional Gain - SRGN ENSG00000122862 CDS Human protein_coding chr10:70856932 chr10:70856931 synonymous SNV . 0 20 hm7G_associated_SNPs_37054 0 0 1 0 2 SRGN chr10:70856840 3'AG 70856840 Downstream 92bp 34096 chr10 70856931 70856931 1 + C T UCEC 70856932 + 70856912 70856952 41 AAGAAAAAGGACCAATGTTCGAACTACTTCCAGGTGAATCC AAGAAAAAGGACCAATGTTTGAACTACTTCCAGGTGAATCC < 41bp 0.517455372992599 0.719034363055957 NA NA prediction 0.403157980126716 Functional Gain - SRGN ENSG00000122862 CDS Human protein_coding chr10:70856932 chr10:70856931 synonymous SNV . 0 20 hm7G_associated_SNPs_37054 0 0 1 0 2 SRGN chr10:70856987 5'GT 70856987 Upstream 57bp 34097 chr22 28389469 28389469 1 + C T COAD 28389470 + 28389450 28389490 41 GGATGTGTACATGGCATTGCGCTGCCCATTCTGGATGCGCT GGATGTGTACATGGCATTGTGCTGCCCATTCTGGATGCGCT < 41bp 0.529915310149951 0.731493293166534 NA NA prediction 0.403155966033166 Functional Gain - TTC28 ENSG00000100154 CDS Human processed_transcript chr22:28389470 chr22:28389469 nonsynonymous SNV 0.994 2 20 hm7G_associated_SNPs_37055 0 0 0 0 1 TTC28-AS1 chr22:28389523 5'GT 28389523 Upstream 55bp 34098 chr1 67855787 67855787 1 + C T STAD 67855788 + 67855768 67855808 41 ATCCAGCAAATAGCACTTGCGCTAAGAAATATCCCATTGCA ATCCAGCAAATAGCACTTGTGCTAAGAAATATCCCATTGCA < 41bp 0.524897083538721 0.726473557622846 NA NA prediction 0.403152948168249 Functional Gain - IL12RB2 ENSG00000081985 CDS Human protein_coding chr1:67855788 chr1:67855787 synonymous SNV . 0 20 hm7G_associated_SNPs_37056 0 0 0 0 1 IL12RB2 chr1:67855811 5'GT 67855811 Upstream 25bp 34099 chr6 126210197 126210197 1 + C T STAD 126210198 + 126210178 126210218 41 ATCTATCAACAAGGAAAAACGACAGCAGAATGGAGAGAAAA ATCTATCAACAAGGAAAAATGACAGCAGAATGGAGAGAAAA < 41bp 0.504673036921981 0.706248865383862 NA NA prediction 0.403151656923763 Functional Gain - NCOA7 ENSG00000111912 CDS Human protein_coding chr6:126210198 chr6:126210197 stopgain 0.999 1 20 hm7G_associated_SNPs_37057 0 0 0 0 1 NCOA7 chr6:126210118 3'AG 126210118 Downstream 80bp 34100 chr16 68710354 68710354 1 + G A STAD 68710355 + 68710335 68710375 41 AATGATGACTTCACTGTGCGGAATGGCGAGACAGTCCAGGT AATGATGACTTCACTGTGCAGAATGGCGAGACAGTCCAGGT < 41bp 0.500014282189242 0.701589763283173 NA NA prediction 0.403150962187861 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68710355 chr16:68710354 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_37058 0 0 0 0 2 CDH3 chr16:68710288 3'AG 68710288 Downstream 67bp 34101 chr16 68710354 68710354 1 + G A STAD 68710355 + 68710335 68710375 41 AATGATGACTTCACTGTGCGGAATGGCGAGACAGTCCAGGT AATGATGACTTCACTGTGCAGAATGGCGAGACAGTCCAGGT < 41bp 0.500014282189242 0.701589763283173 NA NA prediction 0.403150962187861 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68710355 chr16:68710354 nonsynonymous SNV 0.013 0 20 hm7G_associated_SNPs_37058 0 0 0 0 2 CDH3 chr16:68710373 5'GT 68710373 Upstream 20bp 34102 chr9 130243491 130243491 1 + C T UCEC 130243492 + 130243472 130243512 41 AGCTCCGAGATTTTGAAATCGCTGGAAAATGAAAGGTAAGT AGCTCCGAGATTTTGAAATTGCTGGAAAATGAAAGGTAAGT < 41bp 0.522696184310137 0.72427072358631 NA NA prediction 0.403149078552346 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130243492 chr9:130243491 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_37059 1 0 0 0 2 LRSAM1 chr9:130243462 3'AG 130243462 Downstream 30bp 34103 chr9 130243491 130243491 1 + C T UCEC 130243492 + 130243472 130243512 41 AGCTCCGAGATTTTGAAATCGCTGGAAAATGAAAGGTAAGT AGCTCCGAGATTTTGAAATTGCTGGAAAATGAAAGGTAAGT < 41bp 0.522696184310137 0.72427072358631 NA NA prediction 0.403149078552346 Functional Gain - LRSAM1 ENSG00000148356 CDS Human protein_coding chr9:130243492 chr9:130243491 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_37059 1 0 0 0 2 LRSAM1 chr9:130243506 5'GT 130243506 Upstream 16bp 34104 chr6 34789517 34789517 1 + G T PAAD 34789518 + 34789498 34789538 41 ACCTGGAGCTGGATGAAGAGGTTCTACAGAATGTACTGGAG ACCTGGAGCTGGATGAAGATGTTCTACAGAATGTACTGGAG < 41bp 0.355697774991781 0.701573327137301 NA NA prediction 0.403146654274601 Functional Gain - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34789518 chr6:34789517 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_37060 0 0 1 0 2 UHRF1BP1 chr6:34789430 3'AG 34789430 Downstream 88bp 34105 chr6 34789517 34789517 1 + G T PAAD 34789518 + 34789498 34789538 41 ACCTGGAGCTGGATGAAGAGGTTCTACAGAATGTACTGGAG ACCTGGAGCTGGATGAAGATGTTCTACAGAATGTACTGGAG < 41bp 0.355697774991781 0.701573327137301 NA NA prediction 0.403146654274601 Functional Gain - UHRF1BP1 ENSG00000065060 CDS Human protein_coding chr6:34789518 chr6:34789517 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_37060 0 0 1 0 2 UHRF1BP1 chr6:34789592 5'GT 34789592 Upstream 76bp 34106 chr6 117046970 117046970 1 + G T UCEC 117046971 + 117046951 117046991 41 ATTTATTGAGTAGCCCAAAGGAGTCAATTAGAAAAGAAGCC ATTTATTGAGTAGCCCAAATGAGTCAATTAGAAAAGAAGCC < 41bp 0.698551987910119 0.900123886229085 NA NA prediction 0.403143796637931 Functional Gain - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117046971 chr6:117046970 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_37062 0 0 1 0 2 KPNA5 chr6:117046914 3'AG 117046914 Downstream 57bp 34107 chr6 117046970 117046970 1 + G T UCEC 117046971 + 117046951 117046991 41 ATTTATTGAGTAGCCCAAAGGAGTCAATTAGAAAAGAAGCC ATTTATTGAGTAGCCCAAATGAGTCAATTAGAAAAGAAGCC < 41bp 0.698551987910119 0.900123886229085 NA NA prediction 0.403143796637931 Functional Gain - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117046971 chr6:117046970 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_37062 0 0 1 0 2 KPNA5 chr6:117047039 5'GT 117047039 Upstream 70bp 34108 chr6 26446185 26446185 1 + G T LUSC 26446186 + 26446166 26446206 41 GAAATTCCCTCCTCGGCCTGGAAAAGACAGCCAGCATATCC GAAATTCCCTCCTCGGCCTTGAAAAGACAGCCAGCATATCC < 41bp 0.357333562185401 0.701571867061042 NA NA prediction 0.403143734122085 Functional Gain - BTN3A3 ENSG00000111801 CDS Human protein_coding chr6:26446186 chr6:26446185 synonymous SNV . 0 20 hm7G_associated_SNPs_37063 0 0 0 0 1 BTN3A3 chr6:26446213 5'GT 26446213 Upstream 29bp 34109 chrX 149814198 149814198 1 + C T UCEC 149814199 + 149814179 149814219 41 AAATAAGACGGTCATTGTGCGTTGCAGTCAGCCTCTTGTCG AAATAAGACGGTCATTGTGTGTTGCAGTCAGCCTCTTGTCG < 41bp 0.500380256629219 0.701950715742528 NA NA prediction 0.403140918226618 Functional Gain - MTM1 ENSG00000171100 CDS Human protein_coding chrX:149814199 chrX:149814198 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_37064 1 0 0 1 1 MTM1 chrX:149814156 3'AG 149814156 Downstream 43bp 34110 chr2 232146826 232146826 1 + C T BLCA 232146827 + 232146807 232146847 41 CCTTTCTGTTCCATCCATTCGTGAGGAAGCAAGAGCAATGG CCTTTCTGTTCCATCCATTTGTGAGGAAGCAAGAGCAATGG < 41bp 0.496078879391279 0.701569784198802 NA NA prediction 0.403139568397603 Functional Gain - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232146827 chr2:232146826 nonsynonymous SNV 0.304 4 20 hm7G_associated_SNPs_37065 0 0 1 0 2 ARMC9 chr2:232146772 3'AG 232146772 Downstream 55bp 34111 chr2 232146826 232146826 1 + C T BLCA 232146827 + 232146807 232146847 41 CCTTTCTGTTCCATCCATTCGTGAGGAAGCAAGAGCAATGG CCTTTCTGTTCCATCCATTTGTGAGGAAGCAAGAGCAATGG < 41bp 0.496078879391279 0.701569784198802 NA NA prediction 0.403139568397603 Functional Gain - ARMC9 ENSG00000135931 CDS Human protein_coding chr2:232146827 chr2:232146826 nonsynonymous SNV 0.304 4 20 hm7G_associated_SNPs_37065 0 0 1 0 2 ARMC9 chr2:232146846 5'GT 232146846 Upstream 21bp 34112 chr2 219544431 219544431 1 + G T BLCA 219544432 + 219544412 219544452 41 CTCAGGCCTATAAACGCATGGCTGAGGAGGCCATGCAGAAG CTCAGGCCTATAAACGCATTGCTGAGGAGGCCATGCAGAAG < 41bp 0.713461227641293 0.915030348280387 NA NA prediction 0.403138241278188 Functional Gain - STK36 ENSG00000163482 CDS Human protein_coding chr2:219544432 chr2:219544431 nonsynonymous SNV 0.984 2 20 hm7G_associated_SNPs_37066 0 0 1 0 1 STK36 chr2:219544452 5'GT 219544452 Upstream 22bp 34113 chr15 40708545 40708545 1 + C T rs372504234 40708546 + 40708526 40708566 41 CCACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAG CCACACAGGTAGCCCTGGATGGCATTCAGTGTTTTGGTGAG < 41bp 0.545634989602174 0.747203877776833 NA NA prediction 0.403137776349318 Functional Gain - IVD ENSG00000128928 CDS Human protein_coding chr15:40708546 chr15:40708545 synonymous SNV . 0 20 hm7G_associated_SNPs_37067 0 0 1 0 2 IVD chr15:40708489 3'AG 40708489 Downstream 57bp 34114 chr15 40708545 40708545 1 + C T rs372504234 40708546 + 40708526 40708566 41 CCACACAGGTAGCCCTGGACGGCATTCAGTGTTTTGGTGAG CCACACAGGTAGCCCTGGATGGCATTCAGTGTTTTGGTGAG < 41bp 0.545634989602174 0.747203877776833 NA NA prediction 0.403137776349318 Functional Gain - IVD ENSG00000128928 CDS Human protein_coding chr15:40708546 chr15:40708545 synonymous SNV . 0 20 hm7G_associated_SNPs_37067 0 0 1 0 2 IVD chr15:40708561 5'GT 40708561 Upstream 17bp 34115 chrX 153049627 153049627 1 + C T UCEC 153049628 + 153049608 153049648 41 TGCTCCATCCTCTCCGGCTCGTCCAATCAGCGAGAGACCGG TGCTCCATCCTCTCCGGCTTGTCCAATCAGCGAGAGACCGG < 41bp 0.501604406899574 0.703172814237575 NA NA prediction 0.403136814676 Functional Gain - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049628 chrX:153049627 nonsynonymous SNV 0.090 0 20 hm7G_associated_SNPs_37068 0 0 0 0 2 SRPK3 chrX:153049576 3'AG 153049576 Downstream 52bp 34116 chrX 153049627 153049627 1 + C T UCEC 153049628 + 153049608 153049648 41 TGCTCCATCCTCTCCGGCTCGTCCAATCAGCGAGAGACCGG TGCTCCATCCTCTCCGGCTTGTCCAATCAGCGAGAGACCGG < 41bp 0.501604406899574 0.703172814237575 NA NA prediction 0.403136814676 Functional Gain - SRPK3 ENSG00000184343 CDS Human protein_coding chrX:153049628 chrX:153049627 nonsynonymous SNV 0.090 0 20 hm7G_associated_SNPs_37068 0 0 0 0 2 SRPK3 chrX:153049668 5'GT 153049668 Upstream 42bp 34117 chr3 13671402 13671402 1 + C T rs41283999 13671403 + 13671383 13671423 41 GCTCCTACCGCTGTTCCTGCGCCTCCGGGTTCCTGCTAGCA GCTCCTACCGCTGTTCCTGTGCCTCCGGGTTCCTGCTAGCA < 41bp 0.542656350804575 0.74422442013031 NA NA prediction 0.403136138651468 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13671403 chr3:13671402 synonymous SNV . 0 20 hm7G_associated_SNPs_37069 0 0 0 0 2 FBLN2 chr3:13671320 3'AG 13671320 Downstream 83bp 34118 chr3 13671402 13671402 1 + C T rs41283999 13671403 + 13671383 13671423 41 GCTCCTACCGCTGTTCCTGCGCCTCCGGGTTCCTGCTAGCA GCTCCTACCGCTGTTCCTGTGCCTCCGGGTTCCTGCTAGCA < 41bp 0.542656350804575 0.74422442013031 NA NA prediction 0.403136138651468 Functional Gain - FBLN2 ENSG00000163520 CDS Human protein_coding chr3:13671403 chr3:13671402 synonymous SNV . 0 20 hm7G_associated_SNPs_37069 0 0 0 0 2 FBLN2 chr3:13671445 5'GT 13671445 Upstream 44bp 34119 chr7 138235823 138235823 1 + C T CESC 138235824 + 138235804 138235844 41 CTAGATTACATACCGGTTACGGCACCTCCTTCGTGCAAGGT CTAGATTACATACCGGTTATGGCACCTCCTTCGTGCAAGGT < 41bp 0.56621825929706 0.767786272307601 NA NA prediction 0.403136026021082 Functional Gain - TRIM24 ENSG00000122779 CDS Human protein_coding chr7:138235824 chr7:138235823 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_37070 0 0 1 0 1 TRIM24 chr7:138235808 3'AG 138235808 Downstream 16bp 34120 chr10 121429653 121429653 1 + G A rs148985314 121429654 + 121429634 121429674 41 GTGGACAGGTGGCAGCGGCGGCGGCAGCCCAGCCCCCAGCC GTGGACAGGTGGCAGCGGCAGCGGCAGCCCAGCCCCCAGCC < 41bp 0.574596732774947 0.776163651125622 NA NA prediction 0.403133836701352 Functional Gain - BAG3 ENSG00000151929 CDS Human protein_coding chr10:121429654 chr10:121429653 synonymous SNV . 0 20 hm7G_associated_SNPs_37071 1 0 1 0 1 BAG3 chr10:121429689 5'GT 121429689 Upstream 37bp 34121 chr12 11905495 11905495 1 + C T UCEC 11905496 + 11905476 11905516 41 GATGGAGGAAGACTCGATCCGCCTGCCTGCGCACCTGCGTG GATGGAGGAAGACTCGATCTGCCTGCCTGCGCACCTGCGTG < 41bp 0.49422986848139 0.70156542643613 NA NA prediction 0.403130852872259 Functional Gain - ETV6 ENSG00000139083 CDS Human protein_coding chr12:11905496 chr12:11905495 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37072 0 0 0 0 1 ETV6 chr12:11905513 5'GT 11905513 Upstream 19bp 34122 chr11 6630832 6630832 1 + C T STAD 6630833 + 6630813 6630853 41 CTCATCACACACTGGATGCCGTATGGATCCCTCTACAATGT CTCATCACACACTGGATGCTGTATGGATCCCTCTACAATGT < 41bp 0.498021658194575 0.701564801781924 NA NA prediction 0.403129603563848 Functional Gain - ILK ENSG00000166333 CDS Human protein_coding chr11:6630833 chr11:6630832 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37073 0 0 0 0 2 ILK chr11:6630743 3'AG 6630743 Downstream 90bp 34123 chr11 6630832 6630832 1 + C T STAD 6630833 + 6630813 6630853 41 CTCATCACACACTGGATGCCGTATGGATCCCTCTACAATGT CTCATCACACACTGGATGCTGTATGGATCCCTCTACAATGT < 41bp 0.498021658194575 0.701564801781924 NA NA prediction 0.403129603563848 Functional Gain - ILK ENSG00000166333 CDS Human protein_coding chr11:6630833 chr11:6630832 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37073 0 0 0 0 2 ILK chr11:6630870 5'GT 6630870 Upstream 39bp 34124 chr1 167064177 167064177 1 + C T COAD 167064178 + 167064158 167064198 41 GGTGCAGGCCCACTACCTCCGAAGCCCCTCCCCTAGCCAGT GGTGCAGGCCCACTACCTCTGAAGCCCCTCCCCTAGCCAGT < 41bp 0.533663270188238 0.735226057611093 NA NA prediction 0.403125574845709 Functional Gain - DUSP27 ENSG00000198842 CDS Human protein_coding chr1:167064178 chr1:167064177 stopgain 0.997 1 20 hm7G_associated_SNPs_37076 0 0 0 0 1 DUSP27 chr1:167064196 5'GT 167064196 Upstream 20bp 34125 chr2 119731990 119731990 1 + G A SKCM 119731991 + 119731971 119732011 41 GCTGAGAAGGGAGCCAAGGGGGCTATGGGACGAGATGGAGC GCTGAGAAGGGAGCCAAGGAGGCTATGGGACGAGATGGAGC < 41bp 0.476742626781533 0.701557085568172 NA NA prediction 0.403114171136344 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119731991 chr2:119731990 nonsynonymous SNV 0.419 2 20 hm7G_associated_SNPs_37079 0 0 0 0 2 MARCO chr2:119731909 3'AG 119731909 Downstream 82bp 34126 chr2 119731990 119731990 1 + G A SKCM 119731991 + 119731971 119732011 41 GCTGAGAAGGGAGCCAAGGGGGCTATGGGACGAGATGGAGC GCTGAGAAGGGAGCCAAGGAGGCTATGGGACGAGATGGAGC < 41bp 0.476742626781533 0.701557085568172 NA NA prediction 0.403114171136344 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119731991 chr2:119731990 nonsynonymous SNV 0.419 2 20 hm7G_associated_SNPs_37079 0 0 0 0 2 MARCO chr2:119732016 5'GT 119732016 Upstream 27bp 34127 chr1 160104376 160104376 1 + C T LIHC 160104377 + 160104357 160104397 41 TGTGGAGGACATTGCAGCCCGGCTCAACATTCCCATGAGTC TGTGGAGGACATTGCAGCCTGGCTCAACATTCCCATGAGTC < 41bp 0.560176120725396 0.761731189373218 NA NA prediction 0.403110137295644 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160104377 chr1:160104376 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_37082 0 0 0 0 1 ATP1A2 chr1:160104410 5'GT 160104410 Upstream 35bp 34128 chr20 409217 409217 1 + C T UCEC 409218 + 409198 409238 41 GATGTGGCTGCCCGGCAGACGACAGAGATGCTGAAGGTGAG GATGTGGCTGCCCGGCAGATGACAGAGATGCTGAAGGTGAG < 41bp 0.535585510304336 0.737139856064037 NA NA prediction 0.403108691519402 Functional Gain - RBCK1 ENSG00000125826 CDS Human protein_coding chr20:409218 chr20:409217 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_37083 0 0 1 0 1 RBCK1 chr20:409135 3'AG 409135 Downstream 83bp 34129 chr9 140147360 140147360 1 - C T COAD 140147359 - 140147339 140147379 41 ATCGAGAAGGCCGGCGAGCGGGGGCTCTGCAGGCGGCTCCC ATCGAGAAGGCCGGCGAGCAGGGGCTCTGCAGGCGGCTCCC < 41bp 0.588193227443292 0.789746429076181 NA NA prediction 0.403106403265777 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140147359 chr9:140147360 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_37085 0 0 1 0 2 STPG3 chr9:140147327 5'GT 140147327 Upstream 34bp 34130 chr9 140147360 140147360 1 - C T COAD 140147359 - 140147339 140147379 41 ATCGAGAAGGCCGGCGAGCGGGGGCTCTGCAGGCGGCTCCC ATCGAGAAGGCCGGCGAGCAGGGGCTCTGCAGGCGGCTCCC < 41bp 0.588193227443292 0.789746429076181 NA NA prediction 0.403106403265777 Functional Gain - STPG3 ENSG00000197768 CDS Human protein_coding chr9:140147359 chr9:140147360 nonsynonymous SNV 0.005 3 20 hm7G_associated_SNPs_37085 0 0 1 0 2 STPG3-AS1 chr9:140147427 3'AG 140147427 Downstream 68bp 34131 chr8 86193528 86193528 1 + C T LUSC 86193529 + 86193509 86193549 41 TTTTCTGGTGAGCAATCACCGCCCACCACAGCCTCTAAAGG TTTTCTGGTGAGCAATCACTGCCCACCACAGCCTCTAAAGG < 41bp 0.505159491893003 0.706712456310484 NA NA prediction 0.403105928834962 Functional Gain - CA13 ENSG00000185015 CDS Human protein_coding chr8:86193529 chr8:86193528 nonsynonymous SNV 0.643 5 20 hm7G_associated_SNPs_37087 0 0 1 0 1 CA13 chr8:86193459 3'AG 86193459 Downstream 70bp 34132 chr9 2073271 2073271 1 + C T rs202136878 2073272 + 2073252 2073292 41 AAGTGACTCACACAGAAACCGGCAAGGTTCTGTTCGGACCA AAGTGACTCACACAGAAACTGGCAAGGTTCTGTTCGGACCA < 41bp 0.490295709560022 0.701551910002199 NA NA prediction 0.403103820004398 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2073272 chr9:2073271 synonymous SNV . 0 20 hm7G_associated_SNPs_37089 1 0 1 0 2 SMARCA2 chr9:2073212 3'AG 2073212 Downstream 60bp 34133 chr9 2073271 2073271 1 + C T rs202136878 2073272 + 2073252 2073292 41 AAGTGACTCACACAGAAACCGGCAAGGTTCTGTTCGGACCA AAGTGACTCACACAGAAACTGGCAAGGTTCTGTTCGGACCA < 41bp 0.490295709560022 0.701551910002199 NA NA prediction 0.403103820004398 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2073272 chr9:2073271 synonymous SNV . 0 20 hm7G_associated_SNPs_37089 1 0 1 0 2 SMARCA2 chr9:2073342 5'GT 2073342 Upstream 72bp 34134 chr17 27017169 27017169 1 + C T GBM 27017170 + 27017150 27017190 41 CTGTCGATATAAGGACCTCCGGACAGCCTACCGCTCTCCCA CTGTCGATATAAGGACCTCTGGACAGCCTACCGCTCTCCCA < 41bp 0.542125555657412 0.743677034337373 NA NA prediction 0.403102957359923 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27017170 chr17:27017169 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37090 0 0 1 0 2 SUPT6H chr17:27017100 3'AG 27017100 Downstream 70bp 34135 chr17 27017169 27017169 1 + C T GBM 27017170 + 27017150 27017190 41 CTGTCGATATAAGGACCTCCGGACAGCCTACCGCTCTCCCA CTGTCGATATAAGGACCTCTGGACAGCCTACCGCTCTCCCA < 41bp 0.542125555657412 0.743677034337373 NA NA prediction 0.403102957359923 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27017170 chr17:27017169 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37090 0 0 1 0 2 SUPT6H chr17:27017247 5'GT 27017247 Upstream 79bp 34136 chr5 42711413 42711413 1 + C T COAD 42711414 + 42711394 42711434 41 GAAACTCTGGAAATTATGGCGAGTTCAGTGAGGTGCTCTAT GAAACTCTGGAAATTATGGTGAGTTCAGTGAGGTGCTCTAT < 41bp 0.508639606573105 0.710190307804437 NA NA prediction 0.403101402462663 Functional Gain - GHR ENSG00000112964 CDS Human protein_coding chr5:42711414 chr5:42711413 synonymous SNV . 0 20 hm7G_associated_SNPs_37091 0 0 0 0 1 GHR chr5:42711474 5'GT 42711474 Upstream 62bp 34137 chr21 46907403 46907403 1 + C T COAD 46907404 + 46907384 46907424 41 GCCCTTCTGGTCAACAGCCCGAAGCGCTGATGGGCCACAGG GCCCTTCTGGTCAACAGCCTGAAGCGCTGATGGGCCACAGG < 41bp 0.529534981973145 0.731085549192195 NA NA prediction 0.403101134438101 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46907404 chr21:46907403 stopgain 0.002 0 20 hm7G_associated_SNPs_37092 0 0 1 0 2 COL18A1 chr21:46907361 3'AG 46907361 Downstream 43bp 34138 chr21 46907403 46907403 1 + C T COAD 46907404 + 46907384 46907424 41 GCCCTTCTGGTCAACAGCCCGAAGCGCTGATGGGCCACAGG GCCCTTCTGGTCAACAGCCTGAAGCGCTGATGGGCCACAGG < 41bp 0.529534981973145 0.731085549192195 NA NA prediction 0.403101134438101 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46907404 chr21:46907403 stopgain 0.002 0 20 hm7G_associated_SNPs_37092 0 0 1 0 2 COL18A1 chr21:46907423 5'GT 46907423 Upstream 21bp 34139 chr16 58071455 58071455 1 + C T BLCA 58071456 + 58071436 58071476 41 TCCGCCCAGATCTTGGCCTCGGCCCTTGCAGAGATGCAGCG TCCGCCCAGATCTTGGCCTTGGCCCTTGCAGAGATGCAGCG < 41bp 0.55451032943808 0.75605836817006 NA NA prediction 0.40309607746396 Functional Gain - MMP15 ENSG00000102996 CDS Human protein_coding chr16:58071456 chr16:58071455 nonsynonymous SNV 0.902 2 20 hm7G_associated_SNPs_37094 0 0 0 0 2 MMP15 chr16:58071376 3'AG 58071376 Downstream 80bp 34140 chr16 58071455 58071455 1 + C T BLCA 58071456 + 58071436 58071476 41 TCCGCCCAGATCTTGGCCTCGGCCCTTGCAGAGATGCAGCG TCCGCCCAGATCTTGGCCTTGGCCCTTGCAGAGATGCAGCG < 41bp 0.55451032943808 0.75605836817006 NA NA prediction 0.40309607746396 Functional Gain - MMP15 ENSG00000102996 CDS Human protein_coding chr16:58071456 chr16:58071455 nonsynonymous SNV 0.902 2 20 hm7G_associated_SNPs_37094 0 0 0 0 2 MMP15 chr16:58071524 5'GT 58071524 Upstream 70bp 34141 chr9 93624611 93624611 1 + C T COAD 93624612 + 93624592 93624632 41 TCCCCGAGGGAAAGAAGTTCGACACGCTCTGGCAGGTACCC TCCCCGAGGGAAAGAAGTTTGACACGCTCTGGCAGGTACCC < 41bp 0.546407449359096 0.747953957142488 NA NA prediction 0.403093015566783 Functional Gain - SYK ENSG00000165025 CDS Human protein_coding chr9:93624612 chr9:93624611 synonymous SNV . 0 20 hm7G_associated_SNPs_37096 0 0 0 1 1 SYK chr9:93624626 5'GT 93624626 Upstream 16bp 34142 chrX 47030498 47030498 1 + C T UCEC 47030499 + 47030479 47030519 41 GGCACAGGCACAGCCCCACCGGCCCGCCAGGCTTCCCCCGA GGCACAGGCACAGCCCCACTGGCCCGCCAGGCTTCCCCCGA < 41bp 0.513935558732688 0.715481623809573 NA NA prediction 0.40309213015377 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030499 chrX:47030498 synonymous SNV . 0 20 hm7G_associated_SNPs_37097 0 0 0 0 1 RBM10 chrX:47030427 3'AG 47030427 Downstream 72bp 34143 chr10 101590128 101590128 1 + C T COAD 101590129 + 101590109 101590149 41 CCAGTGTGGAAGAGATCCCCGAAGATGCAGCCTCCATAACC CCAGTGTGGAAGAGATCCCTGAAGATGCAGCCTCCATAACC < 41bp 0.481537026464013 0.701545407172284 NA NA prediction 0.403090814344568 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101590129 chr10:101590128 synonymous SNV . 0 20 hm7G_associated_SNPs_37098 0 0 1 0 2 ABCC2 chr10:101590064 3'AG 101590064 Downstream 65bp 34144 chr10 101590128 101590128 1 + C T COAD 101590129 + 101590109 101590149 41 CCAGTGTGGAAGAGATCCCCGAAGATGCAGCCTCCATAACC CCAGTGTGGAAGAGATCCCTGAAGATGCAGCCTCCATAACC < 41bp 0.481537026464013 0.701545407172284 NA NA prediction 0.403090814344568 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101590129 chr10:101590128 synonymous SNV . 0 20 hm7G_associated_SNPs_37098 0 0 1 0 2 ABCC2 chr10:101590190 5'GT 101590190 Upstream 63bp 34145 chr12 49725038 49725038 1 + C T UCEC 49725039 + 49725019 49725059 41 AACCCTAGCCCTGAGGGAGCGCCTCAAATCGTGTTTAACCG AACCCTAGCCCTGAGGGAGTGCCTCAAATCGTGTTTAACCG < 41bp 0.525551891052197 0.72709597429137 NA NA prediction 0.403088166478346 Functional Gain - TROAP ENSG00000135451 CDS Human protein_coding chr12:49725039 chr12:49725038 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37099 0 0 1 0 1 TROAP chr12:49724997 3'AG 49724997 Downstream 42bp 34146 chr16 89598458 89598458 1 + C T STAD 89598459 + 89598439 89598479 41 CGATGGCCGGCCCAGAGTTCGTGGAGGTCATTGGAGGTAGG CGATGGCCGGCCCAGAGTTTGTGGAGGTCATTGGAGGTAGG < 41bp 0.516989875640669 0.718533541533209 NA NA prediction 0.40308733178508 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89598459 chr16:89598458 synonymous SNV . 0 20 hm7G_associated_SNPs_37100 0 0 1 0 1 SPG7 chr16:89598474 5'GT 89598474 Upstream 17bp 34147 chr19 17905988 17905988 1 + G A rs79401390 17905989 + 17905969 17906009 41 GCTGAGAGGAGCAGGTAGAGGGGCAGAGGCGGGACTGTCGT GCTGAGAGGAGCAGGTAGAAGGGCAGAGGCGGGACTGTCGT < 41bp 0.506759437009147 0.708302690190184 NA NA prediction 0.403086506362073 Functional Gain - B3GNT3 ENSG00000179913 UTR5 Human protein_coding chr19:17905989 chr19:17905988 . . 0 20 hm7G_associated_SNPs_37101 0 0 0 0 1 B3GNT3 chr19:17906015 5'GT 17906015 Upstream 28bp 34148 chr15 65152098 65152098 1 + C T LUAD 65152099 + 65152079 65152119 41 CATCTTGCCCACAGGTCAGCGACATCAAATTCCAGGCACCC CATCTTGCCCACAGGTCAGTGACATCAAATTCCAGGCACCC < 41bp 0.550479579291055 0.752022780034894 NA NA prediction 0.403086401487679 Functional Gain - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152099 chr15:65152098 synonymous SNV . 0 20 hm7G_associated_SNPs_37102 0 0 0 0 2 PLEKHO2 chr15:65152093 3'AG 65152093 Downstream 6bp 34149 chr15 65152098 65152098 1 + C T LUAD 65152099 + 65152079 65152119 41 CATCTTGCCCACAGGTCAGCGACATCAAATTCCAGGCACCC CATCTTGCCCACAGGTCAGTGACATCAAATTCCAGGCACCC < 41bp 0.550479579291055 0.752022780034894 NA NA prediction 0.403086401487679 Functional Gain - PLEKHO2 ENSG00000241839;ENSG00000249240 CDS Human other chr15:65152099 chr15:65152098 synonymous SNV . 0 20 hm7G_associated_SNPs_37102 0 0 0 0 2 PLEKHO2 chr15:65152197 5'GT 65152197 Upstream 100bp 34150 chrX 55783697 55783697 1 + C T UCEC 55783698 + 55783678 55783718 41 AAGTCAGGAACTCTAACTTCGCTGCTTTCATTGACATCTTT AAGTCAGGAACTCTAACTTTGCTGCTTTCATTGACATCTTT < 41bp 0.542546961211982 0.744088232536028 NA NA prediction 0.403082542648091 Functional Gain - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55783698 chrX:55783697 synonymous SNV . 0 20 hm7G_associated_SNPs_37104 0 0 0 0 2 RRAGB chrX:55783649 3'AG 55783649 Downstream 49bp 34151 chrX 55783697 55783697 1 + C T UCEC 55783698 + 55783678 55783718 41 AAGTCAGGAACTCTAACTTCGCTGCTTTCATTGACATCTTT AAGTCAGGAACTCTAACTTTGCTGCTTTCATTGACATCTTT < 41bp 0.542546961211982 0.744088232536028 NA NA prediction 0.403082542648091 Functional Gain - RRAGB ENSG00000083750 CDS Human protein_coding chrX:55783698 chrX:55783697 synonymous SNV . 0 20 hm7G_associated_SNPs_37104 0 0 0 0 2 RRAGB chrX:55783764 5'GT 55783764 Upstream 68bp 34152 chr15 42681261 42681261 1 + C T BLCA 42681262 + 42681242 42681282 41 AGATCATGAAGAAAGCCATCGAGAGAGGCTCCCTCATGGGC AGATCATGAAGAAAGCCATTGAGAGAGGCTCCCTCATGGGC < 41bp 0.519040590009151 0.72058127145356 NA NA prediction 0.403081362888817 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42681262 chr15:42681261 synonymous SNV . 0 20 hm7G_associated_SNPs_37106 1 0 0 0 1 CAPN3 chr15:42681294 5'GT 42681294 Upstream 34bp 34153 chr6 160234646 160234646 1 + C T SKCM 160234647 + 160234627 160234667 41 TTGTAGGAGATGAATTTCCCGAGGGTGTCGAATCTTTCGGA TTGTAGGAGATGAATTTCCTGAGGGTGTCGAATCTTTCGGA < 41bp 0.534529565590062 0.736069522009195 NA NA prediction 0.403079912838267 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160234647 chr6:160234646 nonsynonymous SNV 0.579 0 20 hm7G_associated_SNPs_37109 0 0 1 0 2 PNLDC1 chr6:160234633 3'AG 160234633 Downstream 14bp 34154 chr6 160234646 160234646 1 + C T SKCM 160234647 + 160234627 160234667 41 TTGTAGGAGATGAATTTCCCGAGGGTGTCGAATCTTTCGGA TTGTAGGAGATGAATTTCCTGAGGGTGTCGAATCTTTCGGA < 41bp 0.534529565590062 0.736069522009195 NA NA prediction 0.403079912838267 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160234647 chr6:160234646 nonsynonymous SNV 0.579 0 20 hm7G_associated_SNPs_37109 0 0 1 0 2 PNLDC1 chr6:160234688 5'GT 160234688 Upstream 43bp 34155 chr12 113534540 113534540 1 + G T HNSC 113534541 + 113534521 113534561 41 TGCTGCGGCTGCTCATCACGGCCTGGGAGAGAAGACTCATC TGCTGCGGCTGCTCATCACTGCCTGGGAGAGAAGACTCATC < 41bp 0.706409359944709 0.907949196981608 NA NA prediction 0.403079674073798 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113534541 chr12:113534540 synonymous SNV . 0 20 hm7G_associated_SNPs_37110 0 0 0 0 1 DTX1 chr12:113534520 3'AG 113534520 Downstream 21bp 34156 chr19 10574586 10574586 1 + C T OV 10574587 + 10574567 10574607 41 CCAGCAGGGTGACCGAGAGCGCGAGCGTGGCATGGAAATCA CCAGCAGGGTGACCGAGAGTGCGAGCGTGGCATGGAAATCA < 41bp 0.53213892143636 0.733676502642031 NA NA prediction 0.403075162411341 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10574587 chr19:10574586 nonsynonymous SNV 0.015 4 20 hm7G_associated_SNPs_37112 0 0 0 0 1 PDE4A chr19:10574651 5'GT 10574651 Upstream 66bp 34157 chr4 159782560 159782560 1 + C T UCEC 159782561 + 159782541 159782581 41 TATGGCTTACTATGATGTCCGGCACTTTGGAAAAAAACCAG TATGGCTTACTATGATGTCTGGCACTTTGGAAAAAAACCAG < 41bp 0.532887641282389 0.734423515285096 NA NA prediction 0.403071748005414 Functional Gain - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159782561 chr4:159782560 synonymous SNV . 0 20 hm7G_associated_SNPs_37113 0 0 1 0 2 FNIP2 chr4:159782494 3'AG 159782494 Downstream 67bp 34158 chr4 159782560 159782560 1 + C T UCEC 159782561 + 159782541 159782581 41 TATGGCTTACTATGATGTCCGGCACTTTGGAAAAAAACCAG TATGGCTTACTATGATGTCTGGCACTTTGGAAAAAAACCAG < 41bp 0.532887641282389 0.734423515285096 NA NA prediction 0.403071748005414 Functional Gain - FNIP2 ENSG00000052795 CDS Human protein_coding chr4:159782561 chr4:159782560 synonymous SNV . 0 20 hm7G_associated_SNPs_37113 0 0 1 0 2 FNIP2 chr4:159782640 5'GT 159782640 Upstream 81bp 34159 chr16 76495857 76495857 1 + C T UCEC 76495858 + 76495838 76495878 41 ATTTCATCTCCCTAGGTGTCGAATTAAATGATGGGCAGTGG ATTTCATCTCCCTAGGTGTTGAATTAAATGATGGGCAGTGG < 41bp 0.520630852379333 0.722162544609932 NA NA prediction 0.403063384461198 Functional Gain - CNTNAP4 ENSG00000152910 CDS Human protein_coding chr16:76495858 chr16:76495857 synonymous SNV . 0 20 hm7G_associated_SNPs_37114 0 0 0 0 1 CNTNAP4 chr16:76495853 3'AG 76495853 Downstream 5bp 34160 chr5 60831354 60831354 1 + C T UCEC 60831355 + 60831335 60831375 41 AAATAATCCATCGGGAGAGCGTTCCAATGCACACATTTGCC AAATAATCCATCGGGAGAGTGTTCCAATGCACACATTTGCC < 41bp 0.507262565183745 0.708791120703647 NA NA prediction 0.403057111039803 Functional Gain - ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60831355 chr5:60831354 synonymous SNV . 0 20 hm7G_associated_SNPs_37115 0 0 1 0 2 ZSWIM6 chr5:60831311 3'AG 60831311 Downstream 44bp 34161 chr5 60831354 60831354 1 + C T UCEC 60831355 + 60831335 60831375 41 AAATAATCCATCGGGAGAGCGTTCCAATGCACACATTTGCC AAATAATCCATCGGGAGAGTGTTCCAATGCACACATTTGCC < 41bp 0.507262565183745 0.708791120703647 NA NA prediction 0.403057111039803 Functional Gain - ZSWIM6 ENSG00000130449 CDS Human protein_coding chr5:60831355 chr5:60831354 synonymous SNV . 0 20 hm7G_associated_SNPs_37115 0 0 1 0 2 ZSWIM6 chr5:60831446 5'GT 60831446 Upstream 93bp 34162 chr16 50347964 50347964 1 + C T rs149953515 50347965 + 50347945 50347985 41 TCAGCGTCGCCTCAGGGCACGAGAACCAGGTACTCAAGCCC TCAGCGTCGCCTCAGGGCATGAGAACCAGGTACTCAAGCCC < 41bp 0.538821870714039 0.740350326551151 NA NA prediction 0.403056911674225 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50347965 chr16:50347964 synonymous SNV . 0 20 hm7G_associated_SNPs_37116 0 0 1 0 2 ADCY7 chr16:50347869 3'AG 50347869 Downstream 96bp 34163 chr16 50347964 50347964 1 + C T rs149953515 50347965 + 50347945 50347985 41 TCAGCGTCGCCTCAGGGCACGAGAACCAGGTACTCAAGCCC TCAGCGTCGCCTCAGGGCATGAGAACCAGGTACTCAAGCCC < 41bp 0.538821870714039 0.740350326551151 NA NA prediction 0.403056911674225 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50347965 chr16:50347964 synonymous SNV . 0 20 hm7G_associated_SNPs_37116 0 0 1 0 2 ADCY7 chr16:50347973 5'GT 50347973 Upstream 10bp 34164 chr3 183951032 183951032 1 + C T CESC 183951033 + 183951013 183951053 41 CCCACAGGCATTATCGCCGCGGCTGGCACCATGACGGTGAC CCCACAGGCATTATCGCCGTGGCTGGCACCATGACGGTGAC < 41bp 0.532651273784805 0.734179117401365 NA NA prediction 0.40305568723312 Functional Gain - VWA5B2 ENSG00000145198 CDS Human protein_coding chr3:183951033 chr3:183951032 nonsynonymous SNV 0.673 1 20 hm7G_associated_SNPs_37118 0 0 0 0 1 VWA5B2 chr3:183950966 3'AG 183950966 Downstream 67bp 34165 chr1 227076734 227076734 1 + C T COAD 227076735 + 227076715 227076755 41 CCGCGTGGGTCATCCTGGGCGCCATCTCTGTGTATGGTAGG CCGCGTGGGTCATCCTGGGTGCCATCTCTGTGTATGGTAGG < 41bp 0.542618752024154 0.74414499503607 NA NA prediction 0.403052486023832 Functional Gain - PSEN2 ENSG00000143801 CDS Human protein_coding chr1:227076735 chr1:227076734 synonymous SNV . 0 20 hm7G_associated_SNPs_37119 0 0 1 0 1 PSEN2 chr1:227076750 5'GT 227076750 Upstream 17bp 34166 chr4 69343160 69343160 1 + C T UCEC 69343161 + 69343141 69343181 41 GAAAATGAAACGGGGTCTCCGGAGAATAATTGTCCATGAAA GAAAATGAAACGGGGTCTCTGGAGAATAATTGTCCATGAAA < 41bp 0.49440935055719 0.701526002147747 NA NA prediction 0.403052004295494 Functional Gain - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69343161 chr4:69343160 nonsynonymous SNV 0.701 3 20 hm7G_associated_SNPs_37120 0 0 0 0 1 TMPRSS11E chr4:69343087 3'AG 69343087 Downstream 74bp 34167 chr7 130007797 130007797 1 + C T COAD 130007798 + 130007778 130007818 41 TGTATAAGGTCCATGGGATCGAGTACATTTTTGGCAGCATC TGTATAAGGTCCATGGGATTGAGTACATTTTTGGCAGCATC < 41bp 0.522737113377786 0.72426292837044 NA NA prediction 0.403051629985308 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130007798 chr7:130007797 synonymous SNV . 0 20 hm7G_associated_SNPs_37121 0 0 0 0 2 CPA5 chr7:130007747 3'AG 130007747 Downstream 51bp 34168 chr7 130007797 130007797 1 + C T COAD 130007798 + 130007778 130007818 41 TGTATAAGGTCCATGGGATCGAGTACATTTTTGGCAGCATC TGTATAAGGTCCATGGGATTGAGTACATTTTTGGCAGCATC < 41bp 0.522737113377786 0.72426292837044 NA NA prediction 0.403051629985308 Functional Gain - CPA5 ENSG00000158525 CDS Human protein_coding chr7:130007798 chr7:130007797 synonymous SNV . 0 20 hm7G_associated_SNPs_37121 0 0 0 0 2 CPA5 chr7:130007831 5'GT 130007831 Upstream 35bp 34169 chrX 152036194 152036194 1 + C T BRCA 152036195 + 152036175 152036215 41 GGCGGCAGAGCAGCTCTCCCGAGACTCGACACTGGGTGGGA GGCGGCAGAGCAGCTCTCCTGAGACTCGACACTGGGTGGGA < 41bp 0.529817904036565 0.731343621538497 NA NA prediction 0.403051435003863 Functional Gain - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152036195 chrX:152036194 stopgain 0.243 0 20 hm7G_associated_SNPs_37122 0 0 1 0 2 NSDHL chrX:152036115 3'AG 152036115 Downstream 80bp 34170 chrX 152036194 152036194 1 + C T BRCA 152036195 + 152036175 152036215 41 GGCGGCAGAGCAGCTCTCCCGAGACTCGACACTGGGTGGGA GGCGGCAGAGCAGCTCTCCTGAGACTCGACACTGGGTGGGA < 41bp 0.529817904036565 0.731343621538497 NA NA prediction 0.403051435003863 Functional Gain - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152036195 chrX:152036194 stopgain 0.243 0 20 hm7G_associated_SNPs_37122 0 0 1 0 2 NSDHL chrX:152036217 5'GT 152036217 Upstream 24bp 34171 chr10 82363461 82363461 1 + G A UCEC 82363462 + 82363442 82363482 41 GGCCTCAGCTCCATGTTCCGGGAGCTTGGCCAGAGCCATGA GGCCTCAGCTCCATGTTCCAGGAGCTTGGCCAGAGCCATGA < 41bp 0.556345972405102 0.757871037349593 NA NA prediction 0.403050129888982 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82363462 chr10:82363461 nonsynonymous SNV 0.018 0 20 hm7G_associated_SNPs_37123 0 0 0 0 1 SH2D4B chr10:82363551 5'GT 82363551 Upstream 91bp 34172 chr11 46747498 46747498 1 + C T BLCA 46747499 + 46747479 46747519 41 GGAGCAGTGTGTCCCTGATCGGGGGCAGCAGTACCAGGGGC GGAGCAGTGTGTCCCTGATTGGGGGCAGCAGTACCAGGGGC < 41bp 0.5388900924827 0.740414878440472 NA NA prediction 0.403049571915546 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46747499 chr11:46747498 nonsynonymous SNV 0.027 1 20 hm7G_associated_SNPs_37124 0 0 1 0 1 F2 chr11:46747409 3'AG 46747409 Downstream 90bp 34173 chr12 122684847 122684847 1 + G A UCEC 122684848 + 122684828 122684868 41 TGAAGGCCTTCCTGCTGGCGGGGACCACCGTGACCATCGTG TGAAGGCCTTCCTGCTGGCAGGGACCACCGTGACCATCGTG < 41bp 0.476515221686912 0.701524716600811 NA NA prediction 0.403049433201622 Functional Gain - LRRC43 ENSG00000158113 CDS Human protein_coding chr12:122684848 chr12:122684847 synonymous SNV . 0 20 hm7G_associated_SNPs_37125 0 0 0 0 1 LRRC43 chr12:122684877 5'GT 122684877 Upstream 31bp 34174 chr8 56910951 56910951 1 + G A DLBC 56910952 + 56910932 56910972 41 CGGAAGAACTACATTCACCGGGACCTGCGAGCAGCTAATGT CGGAAGAACTACATTCACCAGGACCTGCGAGCAGCTAATGT < 41bp 0.516322608268877 0.717847192299585 NA NA prediction 0.403049168061415 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56910952 chr8:56910951 nonsynonymous SNV 0.942 5 20 hm7G_associated_SNPs_37126 0 0 1 0 1 LYN chr8:56910905 3'AG 56910905 Downstream 47bp 34175 chr2 64113477 64113477 1 + C T COAD 64113478 + 64113458 64113498 41 ATTTTCTGCCTTTCTAGGGCGGGACACTCACTCAATATGAA ATTTTCTGCCTTTCTAGGGTGGGACACTCACTCAATATGAA < 41bp 0.553389670649994 0.754914209119425 NA NA prediction 0.403049076938863 Functional Gain - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64113478 chr2:64113477 synonymous SNV . 0 20 hm7G_associated_SNPs_37127 0 0 1 0 1 UGP2 chr2:64113475 3'AG 64113475 Downstream 3bp 34176 chr19 55086405 55086405 1 + C T LGG 55086406 + 55086386 55086426 41 TCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTACAG TCCGTGGGCCCCGTGAGCCTGAGTCGCAGGTGGTCGTACAG < 41bp 0.529736735977376 0.731260531695196 NA NA prediction 0.40304759143564 Functional Gain - LILRA2 ENSG00000239998 CDS Human protein_coding chr19:55086406 chr19:55086405 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_37129 0 0 0 0 1 LILRA2 chr19:55086500 5'GT 55086500 Upstream 96bp 34177 chr4 15575830 15575830 1 + C T COAD 15575831 + 15575811 15575851 41 TCTGGGCTACAGTAAGGAGCGAAATATGATTCTTGAGCGGG TCTGGGCTACAGTAAGGAGTGAAATATGATTCTTGAGCGGG < 41bp 0.538245340841318 0.739769101515905 NA NA prediction 0.403047521349175 Functional Gain - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15575831 chr4:15575830 stopgain 0.869 0 20 hm7G_associated_SNPs_37130 1 0 0 0 1 CC2D2A chr4:15575773 3'AG 15575773 Downstream 58bp 34178 chr7 138831962 138831962 1 + G T LUAD 138831963 + 138831943 138831983 41 CAGAAGATCAACTCAGTTTGGCCTCAATCCACTATATGCGA CAGAAGATCAACTCAGTTTTGCCTCAATCCACTATATGCGA < 41bp 0.373292947778194 0.701522549632099 NA NA prediction 0.403045099264198 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138831963 chr7:138831962 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37134 0 0 1 0 2 TTC26 chr7:138831891 3'AG 138831891 Downstream 72bp 34179 chr7 138831962 138831962 1 + G T LUAD 138831963 + 138831943 138831983 41 CAGAAGATCAACTCAGTTTGGCCTCAATCCACTATATGCGA CAGAAGATCAACTCAGTTTTGCCTCAATCCACTATATGCGA < 41bp 0.373292947778194 0.701522549632099 NA NA prediction 0.403045099264198 Functional Gain - TTC26 ENSG00000105948 CDS Human protein_coding chr7:138831963 chr7:138831962 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37134 0 0 1 0 2 TTC26 chr7:138832036 5'GT 138832036 Upstream 75bp 34180 chr3 9746619 9746619 1 + C T COAD 9746620 + 9746600 9746640 41 ACACGCTGAACCCAGACTTCGTGCGCAAATTCGTCCTCGAC ACACGCTGAACCCAGACTTTGTGCGCAAATTCGTCCTCGAC < 41bp 0.520725285460472 0.722247824241634 NA NA prediction 0.403045077562323 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9746620 chr3:9746619 synonymous SNV . 0 20 hm7G_associated_SNPs_37135 0 0 0 0 2 CPNE9 chr3:9746575 3'AG 9746575 Downstream 45bp 34181 chr3 9746619 9746619 1 + C T COAD 9746620 + 9746600 9746640 41 ACACGCTGAACCCAGACTTCGTGCGCAAATTCGTCCTCGAC ACACGCTGAACCCAGACTTTGTGCGCAAATTCGTCCTCGAC < 41bp 0.520725285460472 0.722247824241634 NA NA prediction 0.403045077562323 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9746620 chr3:9746619 synonymous SNV . 0 20 hm7G_associated_SNPs_37135 0 0 0 0 2 CPNE9 chr3:9746678 5'GT 9746678 Upstream 60bp 34182 chr1 151140731 151140731 1 + C T COAD 151140732 + 151140712 151140752 41 CTGCGGCTGGCCCACAGGCCGAGGAGTCAGCAACTGTCTCA CTGCGGCTGGCCCACAGGCTGAGGAGTCAGCAACTGTCTCA < 41bp 0.550914169292732 0.752435585872462 NA NA prediction 0.40304283315946 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151140732 chr1:151140731 synonymous SNV . 0 20 hm7G_associated_SNPs_37136 0 0 1 0 2 SCNM1;TNFAIP8L2-SCNM1 chr1:151140670 3'AG 151140670 Downstream 62bp 34183 chr1 151140731 151140731 1 + C T COAD 151140732 + 151140712 151140752 41 CTGCGGCTGGCCCACAGGCCGAGGAGTCAGCAACTGTCTCA CTGCGGCTGGCCCACAGGCTGAGGAGTCAGCAACTGTCTCA < 41bp 0.550914169292732 0.752435585872462 NA NA prediction 0.40304283315946 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151140732 chr1:151140731 synonymous SNV . 0 20 hm7G_associated_SNPs_37136 0 0 1 0 2 SCNM1;TNFAIP8L2-SCNM1 chr1:151140814 5'GT 151140814 Upstream 84bp 34184 chr16 2126572 2126572 1 + C T UCEC 2126573 + 2126553 2126593 41 CCCGGAGTACTAGTCTCAACGAGAGACCCAAGAGGTACGGC CCCGGAGTACTAGTCTCAATGAGAGACCCAAGAGGTACGGC < 41bp 0.511317703642914 0.712837453428739 NA NA prediction 0.403039499571649 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2126573 chr16:2126572 synonymous SNV . 0 20 hm7G_associated_SNPs_37137 0 0 1 0 2 TSC2 chr16:2126492 3'AG 2126492 Downstream 81bp 34185 chr16 2126572 2126572 1 + C T UCEC 2126573 + 2126553 2126593 41 CCCGGAGTACTAGTCTCAACGAGAGACCCAAGAGGTACGGC CCCGGAGTACTAGTCTCAATGAGAGACCCAAGAGGTACGGC < 41bp 0.511317703642914 0.712837453428739 NA NA prediction 0.403039499571649 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2126573 chr16:2126572 synonymous SNV . 0 20 hm7G_associated_SNPs_37137 0 0 1 0 2 TSC2 chr16:2126586 5'GT 2126586 Upstream 15bp 34186 chr8 1872033 1872033 1 + C T UCEC 1872034 + 1872014 1872054 41 GCTTACAGATGGCCAAGCTCGCCCTAGGTAAGGCCTGGCTG GCTTACAGATGGCCAAGCTTGCCCTAGGTAAGGCCTGGCTG < 41bp 0.526649092745395 0.728167623446635 NA NA prediction 0.403037061402481 Functional Gain - ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1872034 chr8:1872033 synonymous SNV . 0 20 hm7G_associated_SNPs_37138 0 0 0 0 2 ARHGEF10 chr8:1871940 3'AG 1871940 Downstream 94bp 34187 chr8 1872033 1872033 1 + C T UCEC 1872034 + 1872014 1872054 41 GCTTACAGATGGCCAAGCTCGCCCTAGGTAAGGCCTGGCTG GCTTACAGATGGCCAAGCTTGCCCTAGGTAAGGCCTGGCTG < 41bp 0.526649092745395 0.728167623446635 NA NA prediction 0.403037061402481 Functional Gain - ARHGEF10 ENSG00000104728 CDS Human protein_coding chr8:1872034 chr8:1872033 synonymous SNV . 0 20 hm7G_associated_SNPs_37138 0 0 0 0 2 ARHGEF10 chr8:1872040 5'GT 1872040 Upstream 8bp 34188 chr3 184099335 184099335 1 + G A UCEC 184099336 + 184099316 184099356 41 CTGTCCTTCGAGTATCCGCGGGACCCGGAGCATCGCAGTTA CTGTCCTTCGAGTATCCGCAGGACCCGGAGCATCGCAGTTA < 41bp 0.53971202051273 0.741230047994621 NA NA prediction 0.403036054963783 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184099336 chr3:184099335 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_37139 0 0 1 0 2 CHRD chr3:184099284 3'AG 184099284 Downstream 52bp 34189 chr3 184099335 184099335 1 + G A UCEC 184099336 + 184099316 184099356 41 CTGTCCTTCGAGTATCCGCGGGACCCGGAGCATCGCAGTTA CTGTCCTTCGAGTATCCGCAGGACCCGGAGCATCGCAGTTA < 41bp 0.53971202051273 0.741230047994621 NA NA prediction 0.403036054963783 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184099336 chr3:184099335 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_37139 0 0 1 0 2 CHRD chr3:184099412 5'GT 184099412 Upstream 78bp 34190 chr17 72791203 72791203 1 + C T UCEC 72791204 + 72791184 72791224 41 TTTACCTGTATGGAGACCTCGCCATCTATGCTGCTGCCGTG TTTACCTGTATGGAGACCTTGCCATCTATGCTGCTGCCGTG < 41bp 0.564162772373162 0.765679174905121 NA NA prediction 0.403032805063918 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72791204 chr17:72791203 synonymous SNV . 0 20 hm7G_associated_SNPs_37140 0 0 1 0 2 TMEM104 chr17:72791151 3'AG 72791151 Downstream 53bp 34191 chr17 72791203 72791203 1 + C T UCEC 72791204 + 72791184 72791224 41 TTTACCTGTATGGAGACCTCGCCATCTATGCTGCTGCCGTG TTTACCTGTATGGAGACCTTGCCATCTATGCTGCTGCCGTG < 41bp 0.564162772373162 0.765679174905121 NA NA prediction 0.403032805063918 Functional Gain - TMEM104 ENSG00000109066 CDS Human protein_coding chr17:72791204 chr17:72791203 synonymous SNV . 0 20 hm7G_associated_SNPs_37140 0 0 1 0 2 TMEM104 chr17:72791250 5'GT 72791250 Upstream 48bp 34192 chr17 72937902 72937902 1 + G A GBM 72937903 + 72937883 72937923 41 GCGGGGCCCCTCTGGGTGCGGGGTGAGTGTCAGGTTGCTGG GCGGGGCCCCTCTGGGTGCAGGGTGAGTGTCAGGTTGCTGG < 41bp 0.479946293991558 0.701516332407713 NA NA prediction 0.403032664815426 Functional Gain - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72937903 chr17:72937902 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_37141 0 0 0 0 1 OTOP3 chr17:72937904 5'GT 72937904 Upstream 3bp 34193 chr1 1389850 1389850 1 + G A PAAD 1389851 + 1389831 1389871 41 GGGAGACGTCCCGCATCACGGTGCTTGAGGCGCTGCGGCAC GGGAGACGTCCCGCATCACAGTGCTTGAGGCGCTGCGGCAC < 41bp 0.573269578715036 0.774784607800248 NA NA prediction 0.403030058170424 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389851 chr1:1389850 synonymous SNV . 0 20 hm7G_associated_SNPs_37142 0 0 0 0 1 ATAD3C chr1:1389880 5'GT 1389880 Upstream 31bp 34194 chr3 3186365 3186365 1 + G T UCEC 3186366 + 3186346 3186386 41 CTAAACAGAGAATACAAGAGGATTATCTTAGAATTTTAAGA CTAAACAGAGAATACAAGATGATTATCTTAGAATTTTAAGA < 41bp 0.389990769464805 0.70151425974536 NA NA prediction 0.403028519490719 Functional Gain - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3186366 chr3:3186365 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_37143 0 0 1 0 2 TRNT1 chr3:3186268 3'AG 3186268 Downstream 98bp 34195 chr3 3186365 3186365 1 + G T UCEC 3186366 + 3186346 3186386 41 CTAAACAGAGAATACAAGAGGATTATCTTAGAATTTTAAGA CTAAACAGAGAATACAAGATGATTATCTTAGAATTTTAAGA < 41bp 0.389990769464805 0.70151425974536 NA NA prediction 0.403028519490719 Functional Gain - TRNT1 ENSG00000072756 CDS Human protein_coding chr3:3186366 chr3:3186365 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_37143 0 0 1 0 2 TRNT1 chr3:3186394 5'GT 3186394 Upstream 30bp 34196 chr14 105960187 105960187 1 + C T rs118022421 105960188 + 105960168 105960208 41 TTAGATCCACCTGTACACACGCGGCTGCCACAGCGACCAGA TTAGATCCACCTGTACACATGCGGCTGCCACAGCGACCAGA < 41bp 0.525452757239077 0.726966394807445 NA NA prediction 0.403027275136735 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105960188 chr14:105960187 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_37144 0 0 1 0 2 C14orf80 chr14:105960172 3'AG 105960172 Downstream 16bp 34197 chr14 105960187 105960187 1 + C T rs118022421 105960188 + 105960168 105960208 41 TTAGATCCACCTGTACACACGCGGCTGCCACAGCGACCAGA TTAGATCCACCTGTACACATGCGGCTGCCACAGCGACCAGA < 41bp 0.525452757239077 0.726966394807445 NA NA prediction 0.403027275136735 Functional Gain - C14orf80 ENSG00000185347 CDS Human protein_coding chr14:105960188 chr14:105960187 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_37144 0 0 1 0 2 C14orf80 chr14:105960270 5'GT 105960270 Upstream 84bp 34198 chr19 55316285 55316285 1 + C T COAD 55316286 + 55316266 55316306 41 TCTGCTCTGCCTGGCCCAGCGCTGTGGTGCCTCAAGGAGGA TCTGCTCTGCCTGGCCCAGTGCTGTGGTGCCTCAAGGAGGA < 41bp 0.508234238768371 0.709746828670323 NA NA prediction 0.403025179803904 Functional Gain - KIR2DL4 ENSG00000189013 CDS Human protein_coding chr19:55316286 chr19:55316285 synonymous SNV . 0 20 hm7G_associated_SNPs_37145 0 0 0 0 1 KIR2DL4 chr19:55316248 3'AG 55316248 Downstream 38bp 34199 chr18 29044158 29044158 1 + C T LUAD 29044159 + 29044139 29044179 41 TCACCAATCAGTTATCTCTCGATACCGAGTTCAGTCAACCC TCACCAATCAGTTATCTCTTGATACCGAGTTCAGTCAACCC < 41bp 0.506450018340373 0.707962042499281 NA NA prediction 0.403024048317815 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29044159 chr18:29044158 stopgain 0.235 0 20 hm7G_associated_SNPs_37146 0 0 0 0 1 DSG3 chr18:29044074 3'AG 29044074 Downstream 85bp 34200 chr1 47609046 47609046 1 + G A SKCM 47609047 + 47609027 47609067 41 GAGTGCCTTCAGCCATCAGGGCAGCATCCAGGTGGACAGGT GAGTGCCTTCAGCCATCAGAGCAGCATCCAGGTGGACAGGT < 41bp 0.549386439391814 0.750897911311649 NA NA prediction 0.40302294383967 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47609047 chr1:47609046 nonsynonymous SNV 0.072 0 20 hm7G_associated_SNPs_37147 0 0 0 0 1 CYP4A22 chr1:47609065 5'GT 47609065 Upstream 20bp 34201 chr19 11474420 11474420 1 + G A UCEC 11474421 + 11474401 11474441 41 GTGCATAACTTTCAGAGCCGGCCACCCTCTGGCCGAAGGCT GTGCATAACTTTCAGAGCCAGCCACCCTCTGGCCGAAGGCT < 41bp 0.466704234132911 0.701510527904325 NA NA prediction 0.40302105580865 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474421 chr19:11474420 nonsynonymous SNV 0.887 0 20 hm7G_associated_SNPs_37149 0 0 0 0 3 PLPPR2 chr19:11474389 3'AG 11474389 Downstream 32bp 34202 chr19 11474420 11474420 1 + G A UCEC 11474421 + 11474401 11474441 41 GTGCATAACTTTCAGAGCCGGCCACCCTCTGGCCGAAGGCT GTGCATAACTTTCAGAGCCAGCCACCCTCTGGCCGAAGGCT < 41bp 0.466704234132911 0.701510527904325 NA NA prediction 0.40302105580865 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474421 chr19:11474420 nonsynonymous SNV 0.887 0 20 hm7G_associated_SNPs_37149 0 0 0 0 3 PLPPR2 chr19:11474495 5'GT 11474495 Upstream 76bp 34203 chr19 11474420 11474420 1 + G A UCEC 11474421 + 11474401 11474441 41 GTGCATAACTTTCAGAGCCGGCCACCCTCTGGCCGAAGGCT GTGCATAACTTTCAGAGCCAGCCACCCTCTGGCCGAAGGCT < 41bp 0.466704234132911 0.701510527904325 NA NA prediction 0.40302105580865 Functional Gain - PLPPR2 ENSG00000105520 CDS Human protein_coding chr19:11474421 chr19:11474420 nonsynonymous SNV 0.887 0 20 hm7G_associated_SNPs_37149 0 0 0 0 3 PLPPR2 chr19:11474511 5'GT 11474511 Upstream 92bp 34204 chr11 56954756 56954756 1 + C T COAD 56954757 + 56954737 56954777 41 GCCGGGGCCCTCCTGAAGTCGAGGGCGCCCCGCTCTTCTCA GCCGGGGCCCTCCTGAAGTTGAGGGCGCCCCGCTCTTCTCA < 41bp 0.49720966425458 0.701509495336667 NA NA prediction 0.403018990673333 Functional Gain - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56954757 chr11:56954756 synonymous SNV . 0 20 hm7G_associated_SNPs_37151 0 0 0 0 1 LRRC55 chr11:56954719 3'AG 56954719 Downstream 38bp 34205 chr7 150839659 150839659 1 + C T UCEC 150839660 + 150839640 150839680 41 CTGCCATGGGCAATGCCCTCGCCAACAGCGTCTGGGAGGGG CTGCCATGGGCAATGCCCTTGCCAACAGCGTCTGGGAGGGG < 41bp 0.55594353323054 0.757452470137975 NA NA prediction 0.403017873814869 Functional Gain - AGAP3 ENSG00000133612 CDS Human protein_coding chr7:150839660 chr7:150839659 synonymous SNV . 0 20 hm7G_associated_SNPs_37152 0 0 1 0 1 AGAP3 chr7:150839721 5'GT 150839721 Upstream 63bp 34206 chr12 57883115 57883115 1 + C T UCEC 57883116 + 57883096 57883136 41 CAGTGGCTGGAATGGGAAGCGACAGAGCTGCAGGTAGGACT CAGTGGCTGGAATGGGAAGTGACAGAGCTGCAGGTAGGACT < 41bp 0.491823351226603 0.701507720988574 NA NA prediction 0.403015441977149 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57883116 chr12:57883115 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_37154 0 0 1 0 2 MARS chr12:57883050 3'AG 57883050 Downstream 66bp 34207 chr12 57883115 57883115 1 + C T UCEC 57883116 + 57883096 57883136 41 CAGTGGCTGGAATGGGAAGCGACAGAGCTGCAGGTAGGACT CAGTGGCTGGAATGGGAAGTGACAGAGCTGCAGGTAGGACT < 41bp 0.491823351226603 0.701507720988574 NA NA prediction 0.403015441977149 Functional Gain - MARS ENSG00000166986 CDS Human protein_coding chr12:57883116 chr12:57883115 nonsynonymous SNV 0.975 1 20 hm7G_associated_SNPs_37154 0 0 1 0 2 MARS chr12:57883128 5'GT 57883128 Upstream 14bp 34208 chr12 82780722 82780722 1 + C T UCEC 82780723 + 82780703 82780743 41 ACAGTTGCTTGTAGCCCTTCGAGGAAATCAAAACCAGAGAA ACAGTTGCTTGTAGCCCTTTGAGGAAATCAAAACCAGAGAA < 41bp 0.493158510380144 0.701507309183004 NA NA prediction 0.403014618366007 Functional Gain - METTL25 ENSG00000127720 CDS Human protein_coding chr12:82780723 chr12:82780722 stopgain 0.474 0 20 hm7G_associated_SNPs_37155 0 0 1 0 1 METTL25 chr12:82780746 5'GT 82780746 Upstream 25bp 34209 chr11 65392042 65392042 1 + C T UCEC 65392043 + 65392023 65392063 41 AAATAGATATGCACGGCTTCGGGGGCACAGGTATGATGCCC AAATAGATATGCACGGCTTTGGGGGCACAGGTATGATGCCC < 41bp 0.492046211975341 0.701503657426876 NA NA prediction 0.403007314853753 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65392043 chr11:65392042 synonymous SNV . 0 20 hm7G_associated_SNPs_37158 0 0 1 0 1 PCNX3 chr11:65392052 5'GT 65392052 Upstream 11bp 34210 chr18 43311041 43311041 1 + C T UCEC 43311042 + 43311022 43311062 41 GCATATCCCAAGTGGTGTTCGTCAACAACCCCGTCAGTGGA GCATATCCCAAGTGGTGTTTGTCAACAACCCCGTCAGTGGA < 41bp 0.497465942472082 0.7015033657785 NA NA prediction 0.403006731557 Functional Gain - SLC14A1 ENSG00000141469 CDS Human protein_coding chr18:43311042 chr18:43311041 synonymous SNV . 0 20 hm7G_associated_SNPs_37159 0 0 0 0 1 SLC14A1 chr18:43310980 3'AG 43310980 Downstream 62bp 34211 chr16 1394064 1394064 1 + C T UCEC 1394065 + 1394045 1394085 41 TTTCCGCCTTCTCTGAGTTCGGGCTGCAGCTGCTGCGCCAG TTTCCGCCTTCTCTGAGTTTGGGCTGCAGCTGCTGCGCCAG < 41bp 0.535046008260093 0.736549106751475 NA NA prediction 0.403006196982765 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394065 chr16:1394064 synonymous SNV . 0 20 hm7G_associated_SNPs_37160 0 0 0 0 2 BAIAP3 chr16:1394023 3'AG 1394023 Downstream 42bp 34212 chr16 1394064 1394064 1 + C T UCEC 1394065 + 1394045 1394085 41 TTTCCGCCTTCTCTGAGTTCGGGCTGCAGCTGCTGCGCCAG TTTCCGCCTTCTCTGAGTTTGGGCTGCAGCTGCTGCGCCAG < 41bp 0.535046008260093 0.736549106751475 NA NA prediction 0.403006196982765 Functional Gain - BAIAP3 ENSG00000007516 CDS Human protein_coding chr16:1394065 chr16:1394064 synonymous SNV . 0 20 hm7G_associated_SNPs_37160 0 0 0 0 2 BAIAP3 chr16:1394147 5'GT 1394147 Upstream 84bp 34213 chr11 76885835 76885835 1 + C T CESC 76885836 + 76885816 76885856 41 CCTGTGCGTGCGCCAGCTGCGGTACTCAGGAATGATGGAGA CCTGTGCGTGCGCCAGCTGTGGTACTCAGGAATGATGGAGA < 41bp 0.529060449361608 0.730561719785992 NA NA prediction 0.403002540848767 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76885836 chr11:76885835 nonsynonymous SNV 0.985 5 20 hm7G_associated_SNPs_37162 1 0 0 0 1 MYO7A chr11:76885802 3'AG 76885802 Downstream 34bp 34214 chr20 44675056 44675056 1 + C T COAD 44675057 + 44675037 44675077 41 GACACCCAACTGGAGGCCACGCTTTCGATATTACCACTGGT GACACCCAACTGGAGGCCATGCTTTCGATATTACCACTGGT < 41bp 0.535644361667899 0.73714338454733 NA NA prediction 0.402998045758862 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44675057 chr20:44675056 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_37163 0 0 0 0 2 SLC12A5 chr20:44674977 3'AG 44674977 Downstream 80bp 34215 chr20 44675056 44675056 1 + C T COAD 44675057 + 44675037 44675077 41 GACACCCAACTGGAGGCCACGCTTTCGATATTACCACTGGT GACACCCAACTGGAGGCCATGCTTTCGATATTACCACTGGT < 41bp 0.535644361667899 0.73714338454733 NA NA prediction 0.402998045758862 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44675057 chr20:44675056 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_37163 0 0 0 0 2 SLC12A5 chr20:44675075 5'GT 44675075 Upstream 20bp 34216 chrX 11130268 11130268 1 + G T UCEC 11130269 + 11130249 11130289 41 AGGATGCCCGATGCATGAAGGGAAAATGAAAGGTAATCGGC AGGATGCCCGATGCATGAATGGAAAATGAAAGGTAATCGGC < 41bp 0.70490730040831 0.906406240704896 NA NA prediction 0.402997880593173 Functional Gain - HCCS ENSG00000004961 CDS Human protein_coding chrX:11130269 chrX:11130268 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_37164 0 0 1 0 1 HCCS chrX:11130280 5'GT 11130280 Upstream 13bp 34217 chr20 3028480 3028480 1 + G A LGG 3028481 + 3028461 3028501 41 CTGGGCCATCACCAGAGAGGGGCTGGTGGTCAGGCCACAAC CTGGGCCATCACCAGAGAGAGGCTGGTGGTCAGGCCACAAC < 41bp 0.534336342396325 0.7358340963616 NA NA prediction 0.40299550793055 Functional Gain - MRPS26 ENSG00000125901 CDS Human protein_coding chr20:3028481 chr20:3028480 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_37165 0 0 1 0 1 MRPS26 chr20:3028381 3'AG 3028381 Downstream 100bp 34218 chr22 50615406 50615406 1 + C T UCEC 50615407 + 50615387 50615427 41 CACCCCGCACAACTTCACGCGCGACCAGGCGCTGTACGCCC CACCCCGCACAACTTCACGTGCGACCAGGCGCTGTACGCCC < 41bp 0.503554141381985 0.705051272498946 NA NA prediction 0.402994262233922 Functional Gain - PANX2 ENSG00000073150 CDS Human protein_coding chr22:50615407 chr22:50615406 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_37167 0 0 1 0 1 PANX2 chr22:50615368 3'AG 50615368 Downstream 39bp 34219 chrY 6954357 6954357 1 + C T GBM 6954358 + 6954338 6954378 41 GTATGAAGCAGGATGCATGCGTCCACGATCTTCAGGCTCAC GTATGAAGCAGGATGCATGTGTCCACGATCTTCAGGCTCAC < 41bp 0.50608565612191 0.707582696244072 NA NA prediction 0.402994080244323 Functional Gain - TBL1Y ENSG00000092377 CDS Human protein_coding chrY:6954358 chrY:6954357 synonymous SNV . 0 20 hm7G_associated_SNPs_37168 0 0 0 0 1 TBL1Y chrY:6954331 3'AG 6954331 Downstream 27bp 34220 chr16 58521748 58521748 1 + C T rs185755684 58521749 + 58521729 58521769 41 TCCGGGGCCAGGACGCCACCGAGCTGGTGAGTTGGAGTCGC TCCGGGGCCAGGACGCCACTGAGCTGGTGAGTTGGAGTCGC < 41bp 0.522146785970886 0.723643549082899 NA NA prediction 0.402993526224025 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58521749 chr16:58521748 synonymous SNV . 0 20 hm7G_associated_SNPs_37169 0 0 0 0 2 NDRG4 chr16:58521660 3'AG 58521660 Downstream 89bp 34221 chr16 58521748 58521748 1 + C T rs185755684 58521749 + 58521729 58521769 41 TCCGGGGCCAGGACGCCACCGAGCTGGTGAGTTGGAGTCGC TCCGGGGCCAGGACGCCACTGAGCTGGTGAGTTGGAGTCGC < 41bp 0.522146785970886 0.723643549082899 NA NA prediction 0.402993526224025 Functional Gain - NDRG4 ENSG00000103034 CDS Human protein_coding chr16:58521749 chr16:58521748 synonymous SNV . 0 20 hm7G_associated_SNPs_37169 0 0 0 0 2 NDRG4 chr16:58521754 5'GT 58521754 Upstream 7bp 34222 chr18 76752150 76752150 1 + C T UCEC 76752151 + 76752131 76752171 41 GCGAGGAGACCAGCGTGTGCGAGAAATGCTGCGCCGAGTTC GCGAGGAGACCAGCGTGTGTGAGAAATGCTGCGCCGAGTTC < 41bp 0.526272649842687 0.727769154676345 NA NA prediction 0.402993009667315 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76752151 chr18:76752150 synonymous SNV . 0 20 hm7G_associated_SNPs_37170 0 0 0 0 1 SALL3 chr18:76752074 3'AG 76752074 Downstream 77bp 34223 chr6 43174143 43174143 1 + C T OV 43174144 + 43174124 43174164 41 TATACTGGTCCTGTCACCACGCTGCTGGCCCGTCTCCCCAC TATACTGGTCCTGTCACCATGCTGCTGGCCCGTCTCCCCAC < 41bp 0.549310938480541 0.750807191713614 NA NA prediction 0.402992506466146 Functional Gain - CUL9 ENSG00000112659 CDS Human protein_coding chr6:43174144 chr6:43174143 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_37171 0 0 1 0 1 CUL9 chr6:43174059 3'AG 43174059 Downstream 85bp 34224 chr10 63810720 63810720 1 + G T UCEC 63810721 + 63810701 63810741 41 ATTCATTCAGTGGTGTTAAGGATTCCAACAACAATTCCGAT ATTCATTCAGTGGTGTTAATGATTCCAACAACAATTCCGAT < 41bp 0.365945606490468 0.701494849409061 NA NA prediction 0.402989698818121 Functional Gain - ARID5B ENSG00000150347 CDS Human protein_coding chr10:63810721 chr10:63810720 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_37173 0 0 1 0 2 ARID5B chr10:63810647 3'AG 63810647 Downstream 74bp 34225 chr10 63810720 63810720 1 + G T UCEC 63810721 + 63810701 63810741 41 ATTCATTCAGTGGTGTTAAGGATTCCAACAACAATTCCGAT ATTCATTCAGTGGTGTTAATGATTCCAACAACAATTCCGAT < 41bp 0.365945606490468 0.701494849409061 NA NA prediction 0.402989698818121 Functional Gain - ARID5B ENSG00000150347 CDS Human protein_coding chr10:63810721 chr10:63810720 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_37173 0 0 1 0 2 ARID5B chr10:63810759 5'GT 63810759 Upstream 40bp 34226 chr14 23236563 23236563 1 + C T CESC 23236564 + 23236544 23236584 41 CCACACTACCTCTTCCTTGCGGCTTCCGGCCCCCGCAGCCT CCACACTACCTCTTCCTTGTGGCTTCCGGCCCCCGCAGCCT < 41bp 0.523848757985207 0.725341643457038 NA NA prediction 0.402985770943662 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23236564 chr14:23236563 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_37176 0 0 1 0 1 OXA1L chr14:23236618 5'GT 23236618 Upstream 56bp 34227 chr19 11132437 11132437 1 + C T CESC 11132438 + 11132418 11132458 41 GATTGTGGACGAAGGTCACCGCATGAAGAACCACCACTGCA GATTGTGGACGAAGGTCACTGCATGAAGAACCACCACTGCA < 41bp 0.5316462435758 0.733138757321132 NA NA prediction 0.402985027490664 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11132438 chr19:11132437 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_37177 2 0 1 0 1 SMARCA4 chr19:11132401 3'AG 11132401 Downstream 37bp 34228 chr2 98354002 98354002 1 + G A SKCM 98354003 + 98353983 98354023 41 CCATGGGGATGAAGTACCTGGAGGAGAAGAACTTTGTGCAC CCATGGGGATGAAGTACCTAGAGGAGAAGAACTTTGTGCAC < 41bp 0.529624112343893 0.731116282143464 NA NA prediction 0.402984339599143 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98354003 chr2:98354002 synonymous SNV . 0 20 hm7G_associated_SNPs_37178 0 0 1 0 1 ZAP70 chr2:98353936 3'AG 98353936 Downstream 67bp 34229 chr11 118461177 118461177 1 + C T UCEC 118461178 + 118461158 118461198 41 TGACAAGTATGGCCGAATTCGTCTTCATGTGGAAAATGAAG TGACAAGTATGGCCGAATTTGTCTTCATGTGGAAAATGAAG < 41bp 0.509586067162761 0.711077171907644 NA NA prediction 0.402982209489765 Functional Gain - ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118461178 chr11:118461177 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_37179 0 0 1 0 1 ARCN1 chr11:118461221 5'GT 118461221 Upstream 45bp 34230 chr16 30196549 30196549 1 + C T STAD 30196550 + 30196530 30196570 41 AATGAGCCGGCAGGTGGTCCGCTCCAGCAAGTTCCGCCACG AATGAGCCGGCAGGTGGTCTGCTCCAGCAAGTTCCGCCACG < 41bp 0.516582282899854 0.718072645312687 NA NA prediction 0.402980724825666 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30196550 chr16:30196549 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_37180 0 0 0 0 1 CORO1A chr16:30196530 3'AG 30196530 Downstream 20bp 34231 chr6 43225665 43225665 1 + C T PRAD 43225666 + 43225646 43225686 41 TCCACGAGCACCTCTACCCCGCCCCAGCAGAACACCCGGCA TCCACGAGCACCTCTACCCTGCCCCAGCAGAACACCCGGCA < 41bp 0.539441292933918 0.740926351526309 NA NA prediction 0.402970117184782 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43225666 chr6:43225665 nonsynonymous SNV 0.990 2 20 hm7G_associated_SNPs_37183 0 0 0 0 1 TTBK1 chr6:43225704 5'GT 43225704 Upstream 40bp 34232 chr8 143562643 143562643 1 + C T SARC 143562644 + 143562624 143562664 41 TGCGACGGTGTGAGCTGGACGAGGAAGGCATCGCCTACTGG TGCGACGGTGTGAGCTGGATGAGGAAGGCATCGCCTACTGG < 41bp 0.539459445054104 0.740944003938176 NA NA prediction 0.402969117768144 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143562644 chr8:143562643 synonymous SNV . 0 20 hm7G_associated_SNPs_37184 0 0 0 0 2 ADGRB1 chr8:143562615 3'AG 143562615 Downstream 29bp 34233 chr8 143562643 143562643 1 + C T SARC 143562644 + 143562624 143562664 41 TGCGACGGTGTGAGCTGGACGAGGAAGGCATCGCCTACTGG TGCGACGGTGTGAGCTGGATGAGGAAGGCATCGCCTACTGG < 41bp 0.539459445054104 0.740944003938176 NA NA prediction 0.402969117768144 Functional Gain - ADGRB1 ENSG00000181790 CDS Human protein_coding chr8:143562644 chr8:143562643 synonymous SNV . 0 20 hm7G_associated_SNPs_37184 0 0 0 0 2 ADGRB1 chr8:143562721 5'GT 143562721 Upstream 79bp 34234 chr5 1214105 1214105 1 + C T LUAD 1214106 + 1214086 1214126 41 CCGGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCTC CCGGACACCTGGCTGGACGTGGGCGCACAGGTCTTCTTCTC < 41bp 0.50559508743821 0.707079277667789 NA NA prediction 0.402968380459158 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214106 chr5:1214105 nonsynonymous SNV 0.288 5 20 hm7G_associated_SNPs_37185 0 0 0 0 2 SLC6A19 chr5:1214068 3'AG 1214068 Downstream 38bp 34235 chr5 1214105 1214105 1 + C T LUAD 1214106 + 1214086 1214126 41 CCGGACACCTGGCTGGACGCGGGCGCACAGGTCTTCTTCTC CCGGACACCTGGCTGGACGTGGGCGCACAGGTCTTCTTCTC < 41bp 0.50559508743821 0.707079277667789 NA NA prediction 0.402968380459158 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1214106 chr5:1214105 nonsynonymous SNV 0.288 5 20 hm7G_associated_SNPs_37185 0 0 0 0 2 SLC6A19 chr5:1214180 5'GT 1214180 Upstream 76bp 34236 chr13 32355862 32355862 1 + C T SKCM 32355863 + 32355843 32355883 41 ATTCTACGTTTCTGTCGTGCGATTCGCTCACAGTGCTGTAA ATTCTACGTTTCTGTCGTGTGATTCGCTCACAGTGCTGTAA < 41bp 0.493089290167199 0.701484160815374 NA NA prediction 0.402968321630748 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32355863 chr13:32355862 synonymous SNV . 0 20 hm7G_associated_SNPs_37186 0 0 0 0 2 RXFP2 chr13:32355808 3'AG 32355808 Downstream 55bp 34237 chr13 32355862 32355862 1 + C T SKCM 32355863 + 32355843 32355883 41 ATTCTACGTTTCTGTCGTGCGATTCGCTCACAGTGCTGTAA ATTCTACGTTTCTGTCGTGTGATTCGCTCACAGTGCTGTAA < 41bp 0.493089290167199 0.701484160815374 NA NA prediction 0.402968321630748 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32355863 chr13:32355862 synonymous SNV . 0 20 hm7G_associated_SNPs_37186 0 0 0 0 2 RXFP2 chr13:32355879 5'GT 32355879 Upstream 18bp 34238 chr3 195944764 195944764 1 + C T rs34352044 195944765 + 195944745 195944785 41 CCAATTACGGCATCCCCTCCGCCTGCTTCTCTCAGCCTCCC CCAATTACGGCATCCCCTCTGCCTGCTTCTCTCAGCCTCCC < 41bp 0.543119112246204 0.744602760167112 NA NA prediction 0.402967295841815 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195944765 chr3:195944764 synonymous SNV . 0 20 hm7G_associated_SNPs_37187 0 0 1 0 2 SLC51A chr3:195944713 3'AG 195944713 Downstream 52bp 34239 chr3 195944764 195944764 1 + C T rs34352044 195944765 + 195944745 195944785 41 CCAATTACGGCATCCCCTCCGCCTGCTTCTCTCAGCCTCCC CCAATTACGGCATCCCCTCTGCCTGCTTCTCTCAGCCTCCC < 41bp 0.543119112246204 0.744602760167112 NA NA prediction 0.402967295841815 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195944765 chr3:195944764 synonymous SNV . 0 20 hm7G_associated_SNPs_37187 0 0 1 0 2 SLC51A chr3:195944807 5'GT 195944807 Upstream 44bp 34240 chr3 183906918 183906918 1 + G T LUAD 183906919 + 183906899 183906939 41 TGAGGCTGGCCCTGGCCCGGGCCCTCTTTGCTAGGTGAGTC TGAGGCTGGCCCTGGCCCGTGCCCTCTTTGCTAGGTGAGTC < 41bp 0.338398380216978 0.70147968222702 NA NA prediction 0.40295936445404 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906919 chr3:183906918 synonymous SNV . 0 20 hm7G_associated_SNPs_37190 0 0 1 0 2 ABCF3 chr3:183906876 3'AG 183906876 Downstream 43bp 34241 chr3 183906918 183906918 1 + G T LUAD 183906919 + 183906899 183906939 41 TGAGGCTGGCCCTGGCCCGGGCCCTCTTTGCTAGGTGAGTC TGAGGCTGGCCCTGGCCCGTGCCCTCTTTGCTAGGTGAGTC < 41bp 0.338398380216978 0.70147968222702 NA NA prediction 0.40295936445404 Functional Gain - ABCF3 ENSG00000161204 CDS Human protein_coding chr3:183906919 chr3:183906918 synonymous SNV . 0 20 hm7G_associated_SNPs_37190 0 0 1 0 2 ABCF3 chr3:183906932 5'GT 183906932 Upstream 15bp 34242 chr14 75277104 75277104 1 + C T GBM 75277105 + 75277085 75277125 41 GGATCGATTTGACAGAGAACGCCGACCCCGAGATGATAGGT GGATCGATTTGACAGAGAATGCCGACCCCGAGATGATAGGT < 41bp 0.514548504651468 0.716028011473824 NA NA prediction 0.402959013644712 Functional Gain - YLPM1 ENSG00000119596 CDS Human protein_coding chr14:75277105 chr14:75277104 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37191 0 0 1 0 1 YLPM1 chr14:75277123 5'GT 75277123 Upstream 20bp 34243 chr2 109398680 109398680 1 + C T CESC 109398681 + 109398661 109398701 41 TGTCAGTCAGTGGAAGGAGCGCGGTGTTGGAGATATAAAGA TGTCAGTCAGTGGAAGGAGTGCGGTGTTGGAGATATAAAGA < 41bp 0.506511588501631 0.707990570096556 NA NA prediction 0.402957963189849 Functional Gain - RANBP2 ENSG00000153201 CDS Human protein_coding chr2:109398681 chr2:109398680 nonsynonymous SNV 0.777 3 20 hm7G_associated_SNPs_37193 0 0 1 0 1 RANBP2 chr2:109398584 3'AG 109398584 Downstream 97bp 34244 chr12 51442181 51442181 1 + G A LGG 51442182 + 51442162 51442202 41 GGGCTCGGTCGGCTGTGTGGGGCTCGGCAGTCACCCCTGGA GGGCTCGGTCGGCTGTGTGAGGCTCGGCAGTCACCCCTGGA < 41bp 0.53984197916994 0.74132089156935 NA NA prediction 0.402957824798819 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51442182 chr12:51442181 stopgain 0.632 0 20 hm7G_associated_SNPs_37194 0 0 1 0 2 LETMD1 chr12:51442154 3'AG 51442154 Downstream 28bp 34245 chr12 51442181 51442181 1 + G A LGG 51442182 + 51442162 51442202 41 GGGCTCGGTCGGCTGTGTGGGGCTCGGCAGTCACCCCTGGA GGGCTCGGTCGGCTGTGTGAGGCTCGGCAGTCACCCCTGGA < 41bp 0.53984197916994 0.74132089156935 NA NA prediction 0.402957824798819 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51442182 chr12:51442181 stopgain 0.632 0 20 hm7G_associated_SNPs_37194 0 0 1 0 2 LETMD1 chr12:51442261 5'GT 51442261 Upstream 81bp 34246 chr20 23350348 23350348 1 + C T PAAD 23350349 + 23350329 23350369 41 CGTGCGGACGGACATTCACCGACAAGTCCACTCTTCGGCGG CGTGCGGACGGACATTCACTGACAAGTCCACTCTTCGGCGG < 41bp 0.534725128222577 0.73620365248906 NA NA prediction 0.402957048532966 Functional Gain - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23350349 chr20:23350348 synonymous SNV . 0 20 hm7G_associated_SNPs_37196 0 0 0 0 1 GZF1 chr20:23350378 5'GT 23350378 Upstream 31bp 34247 chr6 15501190 15501190 1 + C T UCEC 15501191 + 15501171 15501211 41 GGCTGATTAATGAGATGGGCGGCATGCAGCAAGTGACTGAC GGCTGATTAATGAGATGGGTGGCATGCAGCAAGTGACTGAC < 41bp 0.514858075950067 0.716335507133299 NA NA prediction 0.402954862366465 Functional Gain - JARID2 ENSG00000008083 CDS Human protein_coding chr6:15501191 chr6:15501190 synonymous SNV . 0 20 hm7G_associated_SNPs_37197 0 0 1 0 1 JARID2 chr6:15501138 3'AG 15501138 Downstream 53bp 34248 chr16 461547 461547 1 + C T LIHC 461548 + 461528 461568 41 AACGGTGTCAAAGGGCTGCCGGATTTCGCATCCTTCTCTGC AACGGTGTCAAAGGGCTGCTGGATTTCGCATCCTTCTCTGC < 41bp 0.509551026332031 0.711027491039356 NA NA prediction 0.40295292941465 Functional Gain - DECR2 ENSG00000242612 CDS Human protein_coding chr16:461548 chr16:461547 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_37198 0 0 1 0 1 DECR2 chr16:461578 5'GT 461578 Upstream 32bp 34249 chr10 4879744 4879744 1 + G A BLCA 4879745 + 4879725 4879765 41 GAGGCTTTTGAATAAGCCTGGGTTGAGGTTCAAGCCACTAA GAGGCTTTTGAATAAGCCTAGGTTGAGGTTCAAGCCACTAA < 41bp 0.514315418092 0.715789025312952 NA NA prediction 0.402947214441905 Functional Gain - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4879745 chr10:4879744 nonsynonymous SNV 0.044 3 20 hm7G_associated_SNPs_37200 0 0 0 0 2 AKR1E2 chr10:4879651 3'AG 4879651 Downstream 94bp 34250 chr10 4879744 4879744 1 + G A BLCA 4879745 + 4879725 4879765 41 GAGGCTTTTGAATAAGCCTGGGTTGAGGTTCAAGCCACTAA GAGGCTTTTGAATAAGCCTAGGTTGAGGTTCAAGCCACTAA < 41bp 0.514315418092 0.715789025312952 NA NA prediction 0.402947214441905 Functional Gain - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4879745 chr10:4879744 nonsynonymous SNV 0.044 3 20 hm7G_associated_SNPs_37200 0 0 0 0 2 AKR1E2 chr10:4879773 5'GT 4879773 Upstream 30bp 34251 chr11 27679798 27679798 1 + G T COAD 27679799 + 27679779 27679819 41 CTCCAGCAGAAAGAGAAGAGGAGGCTCCAAAGGCACTTGAC CTCCAGCAGAAAGAGAAGATGAGGCTCCAAAGGCACTTGAC < 41bp 0.416031820510096 0.701473004989556 NA NA prediction 0.402946009979113 Functional Gain - BDNF ENSG00000176697 CDS Human protein_coding chr11:27679799 chr11:27679798 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37201 0 0 0 0 1 BDNF chr11:27679788 3'AG 27679788 Downstream 11bp 34252 chr14 24877120 24877120 1 + C T SKCM 24877121 + 24877101 24877141 41 AGAGCTGTGGAAAGAGGTTCGCTACCCACCGATCCTGCACT AGAGCTGTGGAAAGAGGTTTGCTACCCACCGATCCTGCACT < 41bp 0.539812124244125 0.741283608709946 NA NA prediction 0.402942968931641 Functional Gain - NYNRIN ENSG00000205978 CDS Human protein_coding chr14:24877121 chr14:24877120 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_37204 0 0 0 0 1 NYNRIN chr14:24877075 3'AG 24877075 Downstream 46bp 34253 chr12 65633992 65633992 1 + C T STAD 65633993 + 65633973 65634013 41 TGCCTATTCCACATGTACGCGATTCCTTAATACAGCCTCAT TGCCTATTCCACATGTACGTGATTCCTTAATACAGCCTCAT < 41bp 0.552375125817092 0.753844256434776 NA NA prediction 0.402938261235368 Functional Gain - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65633993 chr12:65633992 synonymous SNV . 0 20 hm7G_associated_SNPs_37205 0 0 0 0 2 LEMD3 chr12:65633916 3'AG 65633916 Downstream 77bp 34254 chr12 65633992 65633992 1 + C T STAD 65633993 + 65633973 65634013 41 TGCCTATTCCACATGTACGCGATTCCTTAATACAGCCTCAT TGCCTATTCCACATGTACGTGATTCCTTAATACAGCCTCAT < 41bp 0.552375125817092 0.753844256434776 NA NA prediction 0.402938261235368 Functional Gain - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65633993 chr12:65633992 synonymous SNV . 0 20 hm7G_associated_SNPs_37205 0 0 0 0 2 LEMD3 chr12:65634018 5'GT 65634018 Upstream 27bp 34255 chr1 212619210 212619210 1 + G A KIRC 212619211 + 212619191 212619231 41 AACTGGAGGCCCTGGATGAGGTCTTCACCAAAGTGTACAAA AACTGGAGGCCCTGGATGAAGTCTTCACCAAAGTGTACAAA < 41bp 0.529000325789574 0.730468719180631 NA NA prediction 0.402936786782115 Functional Gain - NENF ENSG00000117691 CDS Human protein_coding chr1:212619211 chr1:212619210 synonymous SNV . 0 20 hm7G_associated_SNPs_37206 0 0 1 1 1 NENF chr1:212619172 3'AG 212619172 Downstream 39bp 34256 chr6 134210976 134210976 1 + G A rs78733835 134210977 + 134210957 134210997 41 AGAACGGGTACATTCACCCGGTCAACCTGGTGAGTGCTCCC AGAACGGGTACATTCACCCAGTCAACCTGGTGAGTGCTCCC < 41bp 0.520481936996216 0.721949654146119 NA NA prediction 0.402935434299805 Functional Gain - TCF21 ENSG00000118526 CDS Human protein_coding chr6:134210977 chr6:134210976 synonymous SNV . 0 20 hm7G_associated_SNPs_37208 0 0 0 0 1 TCF21 chr6:134210985 5'GT 134210985 Upstream 10bp 34257 chr18 66504078 66504078 1 + C T rs61998185 66504079 + 66504059 66504099 41 AATCATCAATTAAGTCACGCGGCGACATGGTGGCACCTGCC AATCATCAATTAAGTCACGTGGCGACATGGTGGCACCTGCC < 41bp 0.508608690831555 0.710071964104348 NA NA prediction 0.402926546545587 Functional Gain - CCDC102B ENSG00000150636 CDS Human protein_coding chr18:66504079 chr18:66504078 synonymous SNV . 0 20 hm7G_associated_SNPs_37211 0 0 0 0 1 CCDC102B chr18:66503986 3'AG 66503986 Downstream 93bp 34258 chr14 101201029 101201029 1 + G A UCEC 101201030 + 101201010 101201050 41 TGGGCGTGCTCACCAGCCTGGTGGTGCTGGGCACTGTGGGT TGGGCGTGCTCACCAGCCTAGTGGTGCTGGGCACTGTGGGT < 41bp 0.547818188319761 0.74928135975509 NA NA prediction 0.402926342870657 Functional Gain - DLK1 ENSG00000185559 CDS Human protein_coding chr14:101201030 chr14:101201029 synonymous SNV . 0 20 hm7G_associated_SNPs_37212 0 0 1 0 1 DLK1 chr14:101200985 3'AG 101200985 Downstream 45bp 34259 chr9 34647856 34647856 1 + G A SKCM 34647857 + 34647837 34647877 41 TGTGCTTCCACCCCTGGTCGGATGTAACGCTGCCACTCATG TGTGCTTCCACCCCTGGTCAGATGTAACGCTGCCACTCATG < 41bp 0.5533769004964 0.754839654898656 NA NA prediction 0.402925508804513 Functional Gain - GALT ENSG00000213930 CDS Human protein_coding chr9:34647857 chr9:34647856 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_37213 1 0 1 0 1 GALT chr9:34647829 3'AG 34647829 Downstream 28bp 34260 chr5 86648999 86648999 1 + C T UCEC 86649000 + 86648980 86649020 41 GGACATCATAGATCACTATCGAAAAGAACAGATTGTTGAAG GGACATCATAGATCACTATTGAAAAGAACAGATTGTTGAAG < 41bp 0.499266357504433 0.70146246030508 NA NA prediction 0.402924920610159 Functional Gain - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86649000 chr5:86648999 stopgain 0.998 0 20 hm7G_associated_SNPs_37214 0 0 1 0 2 RASA1 chr5:86648974 3'AG 86648974 Downstream 26bp 34261 chr5 86648999 86648999 1 + C T UCEC 86649000 + 86648980 86649020 41 GGACATCATAGATCACTATCGAAAAGAACAGATTGTTGAAG GGACATCATAGATCACTATTGAAAAGAACAGATTGTTGAAG < 41bp 0.499266357504433 0.70146246030508 NA NA prediction 0.402924920610159 Functional Gain - RASA1 ENSG00000145715 CDS Human protein_coding chr5:86649000 chr5:86648999 stopgain 0.998 0 20 hm7G_associated_SNPs_37214 0 0 1 0 2 RASA1 chr5:86649052 5'GT 86649052 Upstream 54bp 34262 chr12 6567842 6567842 1 + C T GBM 6567843 + 6567823 6567863 41 TACGACTGAGCTTGGCAAACGAAGCTCTGCTGCCCACCCTC TACGACTGAGCTTGGCAAATGAAGCTCTGCTGCCCACCCTC < 41bp 0.499334460961968 0.701460973730166 NA NA prediction 0.402921947460332 Functional Gain - TAPBPL ENSG00000139192 CDS Human protein_coding chr12:6567843 chr12:6567842 synonymous SNV . 0 20 hm7G_associated_SNPs_37216 0 0 0 0 1 TAPBPL chr12:6567811 3'AG 6567811 Downstream 32bp 34263 chr9 43861114 43861114 1 + C T STAD 43861115 + 43861095 43861135 41 TTCGCGTACGCAGCGGGCGCGGGGCAGCTGCGGGCCGCGGT TTCGCGTACGCAGCGGGCGTGGGGCAGCTGCGGGCCGCGGT < 41bp 0.533207933168406 0.734668545727107 NA NA prediction 0.402921225117401 Functional Gain - CNTNAP3B ENSG00000154529 CDS Human protein_coding chr9:43861115 chr9:43861114 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_37218 0 0 0 0 1 CNTNAP3B chr9:43861206 5'GT 43861206 Upstream 93bp 34264 chr15 45455749 45455749 1 + C T PAAD 45455750 + 45455730 45455770 41 ATCTACTTCATCTGGGTGACGCGGACCCAGCGTCAGTTTGA ATCTACTTCATCTGGGTGATGCGGACCCAGCGTCAGTTTGA < 41bp 0.517874919881161 0.719334172820412 NA NA prediction 0.402918505878501 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45455750 chr15:45455749 nonsynonymous SNV 0.779 5 20 hm7G_associated_SNPs_37220 0 0 0 0 1 DUOX1 chr15:45455730 3'AG 45455730 Downstream 20bp 34265 chr2 234079761 234079761 1 + G A LUSC 234079762 + 234079742 234079782 41 CGTTTTGAGAGACTGACTCGGGACAAATACGCCTACACCAA CGTTTTGAGAGACTGACTCAGGACAAATACGCCTACACCAA < 41bp 0.515520349804461 0.716979259676387 NA NA prediction 0.402917819743852 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234079762 chr2:234079761 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_37221 0 0 1 0 2 INPP5D chr2:234079710 3'AG 234079710 Downstream 52bp 34266 chr2 234079761 234079761 1 + G A LUSC 234079762 + 234079742 234079782 41 CGTTTTGAGAGACTGACTCGGGACAAATACGCCTACACCAA CGTTTTGAGAGACTGACTCAGGACAAATACGCCTACACCAA < 41bp 0.515520349804461 0.716979259676387 NA NA prediction 0.402917819743852 Functional Gain - INPP5D ENSG00000168918 CDS Human protein_coding chr2:234079762 chr2:234079761 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_37221 0 0 1 0 2 INPP5D chr2:234079798 5'GT 234079798 Upstream 38bp 34267 chr3 197559098 197559098 1 + C T HNSC 197559099 + 197559079 197559119 41 ATTTTCAGATCTGCCTCTTCGAGTAGCAGAGATTACTAAAG ATTTTCAGATCTGCCTCTTTGAGTAGCAGAGATTACTAAAG < 41bp 0.522040926494525 0.723499198068529 NA NA prediction 0.402916543148009 Functional Gain - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197559099 chr3:197559098 stopgain 1.000 1 20 hm7G_associated_SNPs_37222 0 0 1 0 2 LRCH3 chr3:197559068 3'AG 197559068 Downstream 31bp 34268 chr3 197559098 197559098 1 + C T HNSC 197559099 + 197559079 197559119 41 ATTTTCAGATCTGCCTCTTCGAGTAGCAGAGATTACTAAAG ATTTTCAGATCTGCCTCTTTGAGTAGCAGAGATTACTAAAG < 41bp 0.522040926494525 0.723499198068529 NA NA prediction 0.402916543148009 Functional Gain - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197559099 chr3:197559098 stopgain 1.000 1 20 hm7G_associated_SNPs_37222 0 0 1 0 2 LRCH3 chr3:197559188 5'GT 197559188 Upstream 91bp 34269 chr6 159086520 159086520 1 + G T TGCT 159086521 + 159086501 159086541 41 GCTGTGCGCGCTGCCAGCAGGTGCTGGGGTTCCTGCTGCAC GCTGTGCGCGCTGCCAGCATGTGCTGGGGTTCCTGCTGCAC < 41bp 0.350734491168222 0.701457834473449 NA NA prediction 0.402915668946897 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159086521 chr6:159086520 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_37223 0 0 0 0 1 SYTL3 chr6:159086427 3'AG 159086427 Downstream 94bp 34270 chr11 4107744 4107744 1 + G A COAD 4107745 + 4107725 4107765 41 GTGTTCGGCAGCGCCTGACGGAGCCACAGCATGGCCTGGGA GTGTTCGGCAGCGCCTGACAGAGCCACAGCATGGCCTGGGA < 41bp 0.492285026036679 0.701455452861512 NA NA prediction 0.402910905723024 Functional Gain - STIM1 ENSG00000167323 CDS Human protein_coding chr11:4107745 chr11:4107744 synonymous SNV . 0 20 hm7G_associated_SNPs_37225 0 0 1 0 2 STIM1 chr11:4107707 3'AG 4107707 Downstream 38bp 34271 chr11 4107744 4107744 1 + G A COAD 4107745 + 4107725 4107765 41 GTGTTCGGCAGCGCCTGACGGAGCCACAGCATGGCCTGGGA GTGTTCGGCAGCGCCTGACAGAGCCACAGCATGGCCTGGGA < 41bp 0.492285026036679 0.701455452861512 NA NA prediction 0.402910905723024 Functional Gain - STIM1 ENSG00000167323 CDS Human protein_coding chr11:4107745 chr11:4107744 synonymous SNV . 0 20 hm7G_associated_SNPs_37225 0 0 1 0 2 STIM1 chr11:4107773 5'GT 4107773 Upstream 30bp 34272 chr4 8607769 8607769 1 + C T KICH 8607770 + 8607750 8607790 41 TGGCAACGAGGTGGCGGGCCGGGAGATGCTCATCTACCTAG TGGCAACGAGGTGGCGGGCTGGGAGATGCTCATCTACCTAG < 41bp 0.542529943194662 0.743984658077046 NA NA prediction 0.402909429764766 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8607770 chr4:8607769 nonsynonymous SNV 0.880 3 20 hm7G_associated_SNPs_37226 0 0 1 0 1 CPZ chr4:8607716 3'AG 8607716 Downstream 54bp 34273 chr14 91666220 91666220 1 + C T UCEC 91666221 + 91666201 91666241 41 GACGATCTTTTTCTTGCTGCGAAGAAGATTCCTGGAATCTC GACGATCTTTTTCTTGCTGTGAAGAAGATTCCTGGAATCTC < 41bp 0.516272730709618 0.717725858801566 NA NA prediction 0.402906256183897 Functional Gain - C14orf159 ENSG00000133943 CDS Human protein_coding chr14:91666221 chr14:91666220 nonsynonymous SNV 0.030 3 20 hm7G_associated_SNPs_37228 0 0 1 0 1 C14orf159 chr14:91666249 5'GT 91666249 Upstream 30bp 34274 chr1 52811772 52811772 1 + C T BRCA 52811773 + 52811753 52811793 41 AATGGCCAGCCCCTTCCCTCGCAGTACATGAATGATCTGGA AATGGCCAGCCCCTTCCCTTGCAGTACATGAATGATCTGGA < 41bp 0.523315240301823 0.724768134108143 NA NA prediction 0.402905787612641 Functional Gain - ZFYVE9 ENSG00000157077 CDS Human protein_coding chr1:52811773 chr1:52811772 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_37229 0 0 0 0 1 ZFYVE9 chr1:52811732 3'AG 52811732 Downstream 41bp 34275 chr10 97787006 97787006 1 + C T READ 97787007 + 97786987 97787027 41 GAGTAAAGTGATGGAATGGCGACCTAAACACCCAACACATT GAGTAAAGTGATGGAATGGTGACCTAAACACCCAACACATT < 41bp 0.507436928890056 0.708887556972601 NA NA prediction 0.402901256165089 Functional Gain - CC2D2B ENSG00000188649 CDS Human protein_coding chr10:97787007 chr10:97787006 stopgain 0.994 0 20 hm7G_associated_SNPs_37230 0 0 0 0 1 CC2D2B chr10:97786969 3'AG 97786969 Downstream 38bp 34276 chr22 27021576 27021576 1 + C T OV 27021577 + 27021557 27021597 41 CTCACCTCCTTCCGGCCTGCGGCCTGTGCTGTAAGTTCTAC CTCACCTCCTTCCGGCCTGTGGCCTGTGCTGTAAGTTCTAC < 41bp 0.510328203610077 0.711772964972545 NA NA prediction 0.402889522724936 Functional Gain - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27021577 chr22:27021576 nonsynonymous SNV 0.955 0 20 hm7G_associated_SNPs_37235 0 0 0 0 1 CRYBA4 chr22:27021586 5'GT 27021586 Upstream 11bp 34277 chr4 110897315 110897315 1 + C T rs11568993 110897316 + 110897296 110897336 41 CTGACAAGTTGTACTGGTGCGATGCCAAGCAGTCTGTGATT CTGACAAGTTGTACTGGTGTGATGCCAAGCAGTCTGTGATT < 41bp 0.551101067137217 0.752544906293963 NA NA prediction 0.402887678313492 Functional Gain - EGF ENSG00000138798 CDS Human protein_coding chr4:110897316 chr4:110897315 synonymous SNV . 0 20 hm7G_associated_SNPs_37238 1 0 0 0 1 EGF chr4:110897391 5'GT 110897391 Upstream 77bp 34278 chr1 23239042 23239042 1 + C T UCEC 23239043 + 23239023 23239063 41 GGCAGTACAAGGAGAGCTTCGCCAATGCCGGCTTCACCTCC GGCAGTACAAGGAGAGCTTTGCCAATGCCGGCTTCACCTCC < 41bp 0.52839201164508 0.72983561488116 NA NA prediction 0.40288720647216 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23239043 chr1:23239042 synonymous SNV . 0 20 hm7G_associated_SNPs_37239 0 0 0 0 1 EPHB2 chr1:23239092 5'GT 23239092 Upstream 51bp 34279 chr7 73098210 73098210 1 + G T UCEC 73098211 + 73098191 73098231 41 CCTGTTGCTGGCGTTGCCCGGAAAGGCCGTAGAATTTGGGG CCTGTTGCTGGCGTTGCCCTGAAAGGCCGTAGAATTTGGGG < 41bp 0.405894451738854 0.701443544223187 NA NA prediction 0.402887088446375 Functional Gain - BUD23 ENSG00000071462 CDS Human protein_coding chr7:73098211 chr7:73098210 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_37240 0 0 1 0 1 BUD23 chr7:73098231 5'GT 73098231 Upstream 22bp 34280 chr9 134394257 134394257 1 + C T COAD 134394258 + 134394238 134394278 41 CCTCCCTGACTGGGGGTATCGGCAACTGGAGATCGTCGGGG CCTCCCTGACTGGGGGTATTGGCAACTGGAGATCGTCGGGG < 41bp 0.544767885413372 0.746208964076756 NA NA prediction 0.402882157326767 Functional Gain - POMT1 ENSG00000130714 CDS Human protein_coding chr9:134394258 chr9:134394257 nonsynonymous SNV 0.947 3 20 hm7G_associated_SNPs_37241 0 0 1 1 2 POMT1 chr9:134394224 3'AG 134394224 Downstream 34bp 34281 chr9 134394257 134394257 1 + C T COAD 134394258 + 134394238 134394278 41 CCTCCCTGACTGGGGGTATCGGCAACTGGAGATCGTCGGGG CCTCCCTGACTGGGGGTATTGGCAACTGGAGATCGTCGGGG < 41bp 0.544767885413372 0.746208964076756 NA NA prediction 0.402882157326767 Functional Gain - POMT1 ENSG00000130714 CDS Human protein_coding chr9:134394258 chr9:134394257 nonsynonymous SNV 0.947 3 20 hm7G_associated_SNPs_37241 0 0 1 1 2 POMT1 chr9:134394344 5'GT 134394344 Upstream 88bp 34282 chr8 41397229 41397229 1 + G T UCEC 41397230 + 41397210 41397250 41 TCCCTCATGTCCTTGAGAAGGAAAAAACACGTCCTGAGGGG TCCCTCATGTCCTTGAGAATGAAAAAACACGTCCTGAGGGG < 41bp 0.709607511243078 0.911047754487877 NA NA prediction 0.402880486489597 Functional Gain - GINS4 ENSG00000147536 CDS Human protein_coding chr8:41397230 chr8:41397229 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_37242 0 0 1 0 1 GINS4 chr8:41397197 3'AG 41397197 Downstream 33bp 34283 chr3 184008628 184008628 1 + C T COAD 184008629 + 184008609 184008649 41 GTCATGGGCCATGAGTTGACGCATGCCTTTGATGACCAAGG GTCATGGGCCATGAGTTGATGCATGCCTTTGATGACCAAGG < 41bp 0.492917654758291 0.701438844491578 NA NA prediction 0.402877688983155 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184008629 chr3:184008628 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_37243 0 0 0 0 2 ECE2 chr3:184008581 3'AG 184008581 Downstream 48bp 34284 chr3 184008628 184008628 1 + C T COAD 184008629 + 184008609 184008649 41 GTCATGGGCCATGAGTTGACGCATGCCTTTGATGACCAAGG GTCATGGGCCATGAGTTGATGCATGCCTTTGATGACCAAGG < 41bp 0.492917654758291 0.701438844491578 NA NA prediction 0.402877688983155 Functional Gain - ECE2 ENSG00000145194 CDS Human protein_coding chr3:184008629 chr3:184008628 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_37243 0 0 0 0 2 ECE2 chr3:184008648 5'GT 184008648 Upstream 21bp 34285 chr4 166405653 166405653 1 + G A HNSC 166405654 + 166405634 166405674 41 CATACTCTTCTTTCAACCCGGCCATGTCTGACCCCAATCGG CATACTCTTCTTTCAACCCAGCCATGTCTGACCCCAATCGG < 41bp 0.530459188935703 0.731896905767776 NA NA prediction 0.402875433664145 Functional Gain - CPE ENSG00000109472 CDS Human protein_coding chr4:166405654 chr4:166405653 synonymous SNV . 0 20 hm7G_associated_SNPs_37245 0 0 1 0 1 CPE chr4:166405574 3'AG 166405574 Downstream 80bp 34286 chr11 67074410 67074410 1 + G T PRAD 67074411 + 67074391 67074431 41 AGGATGAGACGGTCCTCCTGGGCGTGGATTTCCCTGACAGC AGGATGAGACGGTCCTCCTTGGCGTGGATTTCCCTGACAGC < 41bp 0.436160517457158 0.701434578022138 NA NA prediction 0.402869156044276 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67074411 chr11:67074410 synonymous SNV . 0 20 hm7G_associated_SNPs_37247 0 0 0 0 1 SSH3 chr11:67074433 5'GT 67074433 Upstream 24bp 34287 chr1 179638517 179638517 1 + C T SKCM 179638518 + 179638498 179638538 41 CAACTGCAGTGGATGATTCCGCAGAAAAGCCCTCTGGTTCT CAACTGCAGTGGATGATTCTGCAGAAAAGCCCTCTGGTTCT < 41bp 0.51906250771842 0.720494901155092 NA NA prediction 0.402864786873343 Functional Gain - TDRD5 ENSG00000162782 CDS Human protein_coding chr1:179638518 chr1:179638517 synonymous SNV . 0 20 hm7G_associated_SNPs_37249 0 0 0 0 1 TDRD5 chr1:179638539 5'GT 179638539 Upstream 23bp 34288 chr15 68122574 68122574 1 + C T STAD 68122575 + 68122555 68122595 41 CCCGCCGATGATTTGGAAACGAGGAAATCCTATCCAGACCA CCCGCCGATGATTTGGAAATGAGGAAATCCTATCCAGACCA < 41bp 0.538242644324135 0.739672447488149 NA NA prediction 0.402859606328027 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68122575 chr15:68122574 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37251 0 0 0 0 2 SKOR1 chr15:68122529 3'AG 68122529 Downstream 46bp 34289 chr15 68122574 68122574 1 + C T STAD 68122575 + 68122555 68122595 41 CCCGCCGATGATTTGGAAACGAGGAAATCCTATCCAGACCA CCCGCCGATGATTTGGAAATGAGGAAATCCTATCCAGACCA < 41bp 0.538242644324135 0.739672447488149 NA NA prediction 0.402859606328027 Functional Gain - SKOR1 ENSG00000188779 CDS Human protein_coding chr15:68122575 chr15:68122574 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37251 0 0 0 0 2 SKOR1 chr15:68122636 5'GT 68122636 Upstream 63bp 34290 chr17 61657259 61657259 1 + C T SKCM 61657260 + 61657240 61657280 41 TGTTAGGGCGAGTGAATCTCGTGTCTGGCCACGTGAAGACC TGTTAGGGCGAGTGAATCTTGTGTCTGGCCACGTGAAGACC < 41bp 0.53271231650931 0.734139482178067 NA NA prediction 0.402854331337514 Functional Gain - DCAF7 ENSG00000136485 CDS Human protein_coding chr17:61657260 chr17:61657259 synonymous SNV . 0 20 hm7G_associated_SNPs_37254 0 0 1 0 2 DCAF7 chr17:61657186 3'AG 61657186 Downstream 74bp 34291 chr17 61657259 61657259 1 + C T SKCM 61657260 + 61657240 61657280 41 TGTTAGGGCGAGTGAATCTCGTGTCTGGCCACGTGAAGACC TGTTAGGGCGAGTGAATCTTGTGTCTGGCCACGTGAAGACC < 41bp 0.53271231650931 0.734139482178067 NA NA prediction 0.402854331337514 Functional Gain - DCAF7 ENSG00000136485 CDS Human protein_coding chr17:61657260 chr17:61657259 synonymous SNV . 0 20 hm7G_associated_SNPs_37254 0 0 1 0 2 DCAF7 chr17:61657304 5'GT 61657304 Upstream 46bp 34292 chr1 154233542 154233542 1 + C T UCEC 154233543 + 154233523 154233563 41 CCATACTATACAGGGGTCCCGGGCCTCCCCAGCACCTTCCA CCATACTATACAGGGGTCCTGGGCCTCCCCAGCACCTTCCA < 41bp 0.538931387189702 0.740358296593339 NA NA prediction 0.402853818807274 Functional Gain - UBAP2L ENSG00000143569 CDS Human protein_coding chr1:154233543 chr1:154233542 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37255 0 0 1 0 1 UBAP2L chr1:154233585 5'GT 154233585 Upstream 44bp 34293 chr9 141006877 141006877 1 + C T UCEC 141006878 + 141006858 141006898 41 AAGCAGCATCAGTGTGACGCGGAGTTGAGGAAGGAGATTTC AAGCAGCATCAGTGTGACGTGGAGTTGAGGAAGGAGATTTC < 41bp 0.536701219888296 0.738123085882812 NA NA prediction 0.402843731989031 Functional Gain - CACNA1B ENSG00000148408 CDS Human protein_coding chr9:141006878 chr9:141006877 nonsynonymous SNV 0.225 1 20 hm7G_associated_SNPs_37256 0 0 0 0 1 CACNA1B chr9:141006850 3'AG 141006850 Downstream 28bp 34294 chr22 18070764 18070764 1 + G A BRCA 18070765 + 18070745 18070785 41 GGGGTTCAACGAGCTCGCCGGTAAGGCGTCCTTTGCACATT GGGGTTCAACGAGCTCGCCAGTAAGGCGTCCTTTGCACATT < 41bp 0.487772009079816 0.701419460115972 NA NA prediction 0.402838920231944 Functional Gain - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18070765 chr22:18070764 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_37257 0 0 0 0 2 LOC101929372;SLC25A18 chr22:18070691 3'AG 18070691 Downstream 74bp 34295 chr22 18070764 18070764 1 + G A BRCA 18070765 + 18070745 18070785 41 GGGGTTCAACGAGCTCGCCGGTAAGGCGTCCTTTGCACATT GGGGTTCAACGAGCTCGCCAGTAAGGCGTCCTTTGCACATT < 41bp 0.487772009079816 0.701419460115972 NA NA prediction 0.402838920231944 Functional Gain - LOC101929372;SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18070765 chr22:18070764 nonsynonymous SNV 0.009 1 20 hm7G_associated_SNPs_37257 0 0 0 0 2 SLC25A18 chr22:18070845 5'GT 18070845 Upstream 82bp 34296 chr21 47981687 47981687 1 + C T STAD 47981688 + 47981668 47981708 41 TTGGTAGAACGGGGTTCTCCGCACAGCCTGCCATTGATGGA TTGGTAGAACGGGGTTCTCTGCACAGCCTGCCATTGATGGA < 41bp 0.489762176940841 0.701416814255784 NA NA prediction 0.402833628511568 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47981688 chr21:47981687 nonsynonymous SNV 0.971 3 20 hm7G_associated_SNPs_37258 0 0 1 0 2 DIP2A chr21:47981661 3'AG 47981661 Downstream 27bp 34297 chr21 47981687 47981687 1 + C T STAD 47981688 + 47981668 47981708 41 TTGGTAGAACGGGGTTCTCCGCACAGCCTGCCATTGATGGA TTGGTAGAACGGGGTTCTCTGCACAGCCTGCCATTGATGGA < 41bp 0.489762176940841 0.701416814255784 NA NA prediction 0.402833628511568 Functional Gain - DIP2A ENSG00000160305 CDS Human protein_coding chr21:47981688 chr21:47981687 nonsynonymous SNV 0.971 3 20 hm7G_associated_SNPs_37258 0 0 1 0 2 DIP2A chr21:47981718 5'GT 47981718 Upstream 32bp 34298 chr17 4804866 4804866 1 - G A rs137952354 4804865 - 4804845 4804885 41 CTTTTGCCGTAGACAACGACGGCAAGACCATCAACAAGATC CTTTTGCCGTAGACAACGATGGCAAGACCATCAACAAGATC < 41bp 0.552952252678326 0.754367619739819 NA NA prediction 0.402830734122986 Functional Gain - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4804865 chr17:4804866 synonymous SNV . 0 20 hm7G_associated_SNPs_37259 0 0 0 0 2 CHRNE chr17:4804820 5'GT 4804820 Upstream 47bp 34299 chr17 4804866 4804866 1 - G A rs137952354 4804865 - 4804845 4804885 41 CTTTTGCCGTAGACAACGACGGCAAGACCATCAACAAGATC CTTTTGCCGTAGACAACGATGGCAAGACCATCAACAAGATC < 41bp 0.552952252678326 0.754367619739819 NA NA prediction 0.402830734122986 Functional Gain - CHRNE ENSG00000108556 CDS Human protein_coding chr17:4804865 chr17:4804866 synonymous SNV . 0 20 hm7G_associated_SNPs_37259 0 0 0 0 2 CHRNE chr17:4804920 3'AG 4804920 Downstream 55bp 34300 chr13 103510650 103510650 1 + C T CESC 103510651 + 103510631 103510671 41 TTCTTTCATAATCCTCAAGCGATAGATATTGAGTCTGAGGA TTCTTTCATAATCCTCAAGTGATAGATATTGAGTCTGAGGA < 41bp 0.555750849990679 0.75716493593398 NA NA prediction 0.4028281718866 Functional Gain - BIVM-ERCC5;ERCC5 ENSG00000134899;ENSG00000270181 CDS Human other chr13:103510651 chr13:103510650 nonsynonymous SNV 0.737 4 20 hm7G_associated_SNPs_37260 0 0 1 0 1 BIVM-ERCC5;ERCC5 chr13:103510625 3'AG 103510625 Downstream 26bp 34301 chr17 41599488 41599488 1 + C T STAD 41599489 + 41599469 41599509 41 CATCTGCAGTGGGTTCTTCCGTAATGCTGCCAAGAAAGACC CATCTGCAGTGGGTTCTTCTGTAATGCTGCCAAGAAAGACC < 41bp 0.489543026448181 0.701414022793988 NA NA prediction 0.402828045587976 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41599489 chr17:41599488 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_37261 0 0 0 0 1 DHX8 chr17:41599415 3'AG 41599415 Downstream 74bp 34302 chr12 133149178 133149178 1 + C T UCEC 133149179 + 133149159 133149199 41 TCCCACACCCCGGCCCCTTCGGGTCCCTGCAGGGCGCTTTT TCCCACACCCCGGCCCCTTTGGGTCCCTGCAGGGCGCTTTT < 41bp 0.521953958010108 0.723367557197562 NA NA prediction 0.402827198374909 Functional Gain - FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133149179 chr12:133149178 synonymous SNV . 0 20 hm7G_associated_SNPs_37262 0 0 1 0 2 FBRSL1 chr12:133149113 3'AG 133149113 Downstream 66bp 34303 chr12 133149178 133149178 1 + C T UCEC 133149179 + 133149159 133149199 41 TCCCACACCCCGGCCCCTTCGGGTCCCTGCAGGGCGCTTTT TCCCACACCCCGGCCCCTTTGGGTCCCTGCAGGGCGCTTTT < 41bp 0.521953958010108 0.723367557197562 NA NA prediction 0.402827198374909 Functional Gain - FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133149179 chr12:133149178 synonymous SNV . 0 20 hm7G_associated_SNPs_37262 0 0 1 0 2 FBRSL1 chr12:133149208 5'GT 133149208 Upstream 31bp 34304 chrX 51641391 51641391 1 + G A STAD 51641392 + 51641372 51641412 41 CCATTGCAGCTGTCCTCTGGGAGGCACTACGCAAGATGGGA CCATTGCAGCTGTCCTCTGAGAGGCACTACGCAAGATGGGA < 41bp 0.505531513983597 0.706944784690411 NA NA prediction 0.402826541413628 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51641392 chrX:51641391 stopgain 1.000 0 20 hm7G_associated_SNPs_37263 0 0 1 0 2 MAGED1 chrX:51641381 3'AG 51641381 Downstream 11bp 34305 chrX 51641391 51641391 1 + G A STAD 51641392 + 51641372 51641412 41 CCATTGCAGCTGTCCTCTGGGAGGCACTACGCAAGATGGGA CCATTGCAGCTGTCCTCTGAGAGGCACTACGCAAGATGGGA < 41bp 0.505531513983597 0.706944784690411 NA NA prediction 0.402826541413628 Functional Gain - MAGED1 ENSG00000179222 CDS Human protein_coding chrX:51641392 chrX:51641391 stopgain 1.000 0 20 hm7G_associated_SNPs_37263 0 0 1 0 2 MAGED1 chrX:51641423 5'GT 51641423 Upstream 33bp 34306 chr3 9775867 9775867 1 + C T TGCT 9775868 + 9775848 9775888 41 GACTTTCTGCCACAACTTGCGGGCGACTAAGCCACCATACG GACTTTCTGCCACAACTTGTGGGCGACTAAGCCACCATACG < 41bp 0.494687850476523 0.70141184585904 NA NA prediction 0.402823691718081 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9775868 chr3:9775867 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37264 0 0 1 0 1 BRPF1 chr3:9775815 3'AG 9775815 Downstream 53bp 34307 chr11 63594469 63594469 1 + C T UCEC 63594470 + 63594450 63594490 41 CGGATGGAGGAGCCCCCAGCGGTCAGCCTCCTGCAAGACTG CGGATGGAGGAGCCCCCAGTGGTCAGCCTCCTGCAAGACTG < 41bp 0.504243608988816 0.705652913877456 NA NA prediction 0.40281860977728 Functional Gain - C11orf84 ENSG00000168005 CDS Human protein_coding chr11:63594470 chr11:63594469 nonsynonymous SNV 0.770 2 20 hm7G_associated_SNPs_37265 0 0 1 0 1 C11orf84 chr11:63594400 3'AG 63594400 Downstream 70bp 34308 chr12 133158818 133158818 1 + C T COAD 133158819 + 133158799 133158839 41 AGCCCTGACCAACCATGACCGAGAGCCGGACAATGGCAAGG AGCCCTGACCAACCATGACTGAGAGCCGGACAATGGCAAGG < 41bp 0.49436114366383 0.701406172322709 NA NA prediction 0.402812344645417 Functional Gain - FBRSL1 ENSG00000112787 CDS Human protein_coding chr12:133158819 chr12:133158818 stopgain 0.988 0 20 hm7G_associated_SNPs_37267 0 0 1 0 1 FBRSL1 chr12:133158852 5'GT 133158852 Upstream 35bp 34309 chr13 53624408 53624408 1 + C T rs35787155 53624409 + 53624389 53624429 41 ACGTCAACATGTACAACACCGGGAATATTGCCAGAGTTAAC ACGTCAACATGTACAACACTGGGAATATTGCCAGAGTTAAC < 41bp 0.505720461431594 0.70712521255917 NA NA prediction 0.402809502255152 Functional Gain - OLFM4 ENSG00000102837 CDS Human protein_coding chr13:53624409 chr13:53624408 synonymous SNV . 0 20 hm7G_associated_SNPs_37269 0 0 0 0 1 OLFM4 chr13:53624356 3'AG 53624356 Downstream 53bp 34310 chr1 47610231 47610231 1 + G A SKCM 47610232 + 47610212 47610252 41 GTCTTCCCAGATGGAGAATGGGAGCATCTTGTCAGACAAGG GTCTTCCCAGATGGAGAATAGGAGCATCTTGTCAGACAAGG < 41bp 0.491003753422833 0.70140334983398 NA NA prediction 0.40280669966796 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47610232 chr1:47610231 nonsynonymous SNV 0.322 2 20 hm7G_associated_SNPs_37271 0 0 0 0 1 CYP4A22 chr1:47610222 3'AG 47610222 Downstream 10bp 34311 chr18 44030684 44030684 1 + G T UCEC 44030685 + 44030665 44030705 41 AGGAGCTGCTGCAGCTCGAGGACAGGTTGGGTAATGTGACT AGGAGCTGCTGCAGCTCGATGACAGGTTGGGTAATGTGACT < 41bp 0.350543551993571 0.701400338653058 NA NA prediction 0.402800677306117 Functional Gain - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44030685 chr18:44030684 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_37273 0 0 0 0 2 RNF165 chr18:44030667 3'AG 44030667 Downstream 18bp 34312 chr18 44030684 44030684 1 + G T UCEC 44030685 + 44030665 44030705 41 AGGAGCTGCTGCAGCTCGAGGACAGGTTGGGTAATGTGACT AGGAGCTGCTGCAGCTCGATGACAGGTTGGGTAATGTGACT < 41bp 0.350543551993571 0.701400338653058 NA NA prediction 0.402800677306117 Functional Gain - RNF165 ENSG00000141622 CDS Human protein_coding chr18:44030685 chr18:44030684 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_37273 0 0 0 0 2 RNF165 chr18:44030762 5'GT 44030762 Upstream 79bp 34313 chr17 79423330 79423330 1 + C T rs199860933 79423331 + 79423311 79423351 41 CCCTGTTCACAGGAGAAGGCGCAGTGTAAGAAGAGCAGCTG CCCTGTTCACAGGAGAAGGTGCAGTGTAAGAAGAGCAGCTG < 41bp 0.510735397829912 0.712135564289318 NA NA prediction 0.402800332918811 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79423331 chr17:79423330 nonsynonymous SNV 0.402 0 20 hm7G_associated_SNPs_37274 0 0 1 0 1 BAHCC1 chr17:79423323 3'AG 79423323 Downstream 8bp 34314 chrX 17750027 17750027 1 + C T UCEC 17750028 + 17750008 17750048 41 TTCCGGGGACATGTCTGTTCGAAGCAAATCGAGAGCTCCCC TTCCGGGGACATGTCTGTTTGAAGCAAATCGAGAGCTCCCC < 41bp 0.514021486237568 0.715420314098714 NA NA prediction 0.402797655722293 Functional Gain - NHS ENSG00000188158 CDS Human protein_coding chrX:17750028 chrX:17750027 stopgain 0.982 1 20 hm7G_associated_SNPs_37275 0 0 0 0 1 NHS chrX:17749978 3'AG 17749978 Downstream 50bp 34315 chr1 209950711 209950711 1 + G A SKCM 209950712 + 209950692 209950732 41 TACAGGGAGCAGATAGCAGGGACTTACAGATGAACCAGGCC TACAGGGAGCAGATAGCAGAGACTTACAGATGAACCAGGCC < 41bp 0.517796468613925 0.719191431298272 NA NA prediction 0.402789925368694 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209950712 chr1:209950711 synonymous SNV . 0 20 hm7G_associated_SNPs_37276 0 0 0 0 1 TRAF3IP3 chr1:209950697 3'AG 209950697 Downstream 15bp 34316 chr1 179033504 179033504 1 + C T COAD 179033505 + 179033485 179033525 41 CCCTTATGACTCTGGCCCGCGCCTCTTGGACATCATTGACA CCCTTATGACTCTGGCCCGTGCCTCTTGGACATCATTGACA < 41bp 0.545114157999394 0.746506955626097 NA NA prediction 0.402785595253406 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179033505 chr1:179033504 nonsynonymous SNV 0.881 5 20 hm7G_associated_SNPs_37277 0 0 1 0 1 FAM20B chr1:179033440 3'AG 179033440 Downstream 65bp 34317 chr1 7895829 7895829 1 + C T GBM 7895830 + 7895810 7895850 41 GATTTTTGACAGGAAGCAGCGACAGCAGTATATACCTTACT GATTTTTGACAGGAAGCAGTGACAGCAGTATATACCTTACT < 41bp 0.525273747205612 0.726663539591876 NA NA prediction 0.402779584772527 Functional Gain - PER3 ENSG00000049246 CDS Human protein_coding chr1:7895830 chr1:7895829 synonymous SNV . 0 20 hm7G_associated_SNPs_37278 0 0 0 0 1 PER3 chr1:7895822 3'AG 7895822 Downstream 8bp 34318 chr22 45728369 45728369 1 + C T GBM 45728370 + 45728350 45728390 41 GGGCTGTGGGGAGACCCTTCGTGATCAGATATTCCAGGCCC GGGCTGTGGGGAGACCCTTTGTGATCAGATATTCCAGGCCC < 41bp 0.530493686351045 0.731882061387223 NA NA prediction 0.402776750072357 Functional Gain - FAM118A ENSG00000100376 CDS Human protein_coding chr22:45728370 chr22:45728369 nonsynonymous SNV 0.256 4 20 hm7G_associated_SNPs_37280 0 0 1 0 1 FAM118A chr22:45728306 3'AG 45728306 Downstream 64bp 34319 chr1 244541860 244541860 1 + C T UCEC 244541861 + 244541841 244541881 41 CATTCGATATATTTGTCTTCGAAGACATTCAAAGCCTGCCG CATTCGATATATTTGTCTTTGAAGACATTCAAAGCCTGCCG < 41bp 0.500149262659618 0.70153541023508 NA NA prediction 0.402772295150923 Functional Gain - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244541861 chr1:244541860 stopgain 0.026 0 20 hm7G_associated_SNPs_37281 0 0 0 0 2 C1orf100 chr1:244541769 3'AG 244541769 Downstream 92bp 34320 chr1 244541860 244541860 1 + C T UCEC 244541861 + 244541841 244541881 41 CATTCGATATATTTGTCTTCGAAGACATTCAAAGCCTGCCG CATTCGATATATTTGTCTTTGAAGACATTCAAAGCCTGCCG < 41bp 0.500149262659618 0.70153541023508 NA NA prediction 0.402772295150923 Functional Gain - C1orf100 ENSG00000173728 CDS Human protein_coding chr1:244541861 chr1:244541860 stopgain 0.026 0 20 hm7G_associated_SNPs_37281 0 0 0 0 2 C1orf100 chr1:244541941 5'GT 244541941 Upstream 82bp 34321 chr10 1130477 1130477 1 + C T rs145160560 1130478 + 1130458 1130498 41 TGCTCGGGACTGCATCAGCCGGTGAGTCGCACACGGACCTG TGCTCGGGACTGCATCAGCTGGTGAGTCGCACACGGACCTG < 41bp 0.538506908243473 0.739891215025166 NA NA prediction 0.402768613563387 Functional Gain - WDR37 ENSG00000047056 CDS Human protein_coding chr10:1130478 chr10:1130477 synonymous SNV . 0 20 hm7G_associated_SNPs_37282 0 0 1 0 1 WDR37 chr10:1130478 5'GT 1130478 Upstream 2bp 34322 chr2 231256934 231256934 1 + G A rs115755837 231256935 + 231256915 231256955 41 GGCGGGTGGCCCCTACGACGGCTGATGGAGGTATTCCAATG GGCGGGTGGCCCCTACGACAGCTGATGGAGGTATTCCAATG < 41bp 0.489731540422258 0.70138410782618 NA NA prediction 0.40276821565236 Functional Gain - SP140L ENSG00000185404 CDS Human protein_coding chr2:231256935 chr2:231256934 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_37284 0 0 1 0 1 SP140L chr2:231256944 5'GT 231256944 Upstream 11bp 34323 chr6 36106713 36106713 1 + C T PRAD 36106714 + 36106694 36106734 41 GACAAGCGCCTGACGGCCGCGCAGGCCCTCACCCATCCCTT GACAAGCGCCTGACGGCCGTGCAGGCCCTCACCCATCCCTT < 41bp 0.489409980058155 0.70138384666756 NA NA prediction 0.402767693335121 Functional Gain - MAPK13 ENSG00000156711 CDS Human protein_coding chr6:36106714 chr6:36106713 nonsynonymous SNV 0.021 1 20 hm7G_associated_SNPs_37285 0 0 1 0 1 MAPK13 chr6:36106656 3'AG 36106656 Downstream 58bp 34324 chr3 49737677 49737677 1 + G T LIHC 49737678 + 49737658 49737698 41 AGCGCAAGGTGTATCTGGTGGAGGCTGTGCTCATGAGCTTC AGCGCAAGGTGTATCTGGTTGAGGCTGTGCTCATGAGCTTC < 41bp 0.345870297835494 0.701382700905829 NA NA prediction 0.402765401811658 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49737678 chr3:49737677 synonymous SNV . 0 20 hm7G_associated_SNPs_37287 0 0 1 0 1 RNF123 chr3:49737660 3'AG 49737660 Downstream 18bp 34325 chr3 122811251 122811251 1 + G T HNSC 122811252 + 122811232 122811272 41 TGTCCACAGTGGCCCAGGCGGTGAAAGGACAAGGGACCATC TGTCCACAGTGGCCCAGGCTGTGAAAGGACAAGGGACCATC < 41bp 0.710948640517991 0.91233067354615 NA NA prediction 0.402764066056319 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122811252 chr3:122811251 synonymous SNV . 0 20 hm7G_associated_SNPs_37288 0 0 1 0 2 PDIA5 chr3:122811202 3'AG 122811202 Downstream 50bp 34326 chr3 122811251 122811251 1 + G T HNSC 122811252 + 122811232 122811272 41 TGTCCACAGTGGCCCAGGCGGTGAAAGGACAAGGGACCATC TGTCCACAGTGGCCCAGGCTGTGAAAGGACAAGGGACCATC < 41bp 0.710948640517991 0.91233067354615 NA NA prediction 0.402764066056319 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122811252 chr3:122811251 synonymous SNV . 0 20 hm7G_associated_SNPs_37288 0 0 1 0 2 PDIA5 chr3:122811289 5'GT 122811289 Upstream 39bp 34327 chr19 50208532 50208532 1 + C T GBM 50208533 + 50208513 50208553 41 GAGAAGATCTTCAACACCACGCGGATTCCAGGGGTCCAAAA GAGAAGATCTTCAACACCATGCGGATTCCAGGGGTCCAAAA < 41bp 0.553310053334261 0.754690541062447 NA NA prediction 0.402760975456372 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208533 chr19:50208532 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_37291 0 0 0 0 2 CPT1C chr19:50208471 3'AG 50208471 Downstream 62bp 34328 chr19 50208532 50208532 1 + C T GBM 50208533 + 50208513 50208553 41 GAGAAGATCTTCAACACCACGCGGATTCCAGGGGTCCAAAA GAGAAGATCTTCAACACCATGCGGATTCCAGGGGTCCAAAA < 41bp 0.553310053334261 0.754690541062447 NA NA prediction 0.402760975456372 Functional Gain - CPT1C ENSG00000169169 CDS Human protein_coding chr19:50208533 chr19:50208532 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_37291 0 0 0 0 2 CPT1C chr19:50208555 5'GT 50208555 Upstream 24bp 34329 chr10 134463965 134463965 1 + C T BRCA 134463966 + 134463946 134463986 41 GAAAGAATATAACAGGGCTCGAGTCTACCTGGATGAAAACT GAAAGAATATAACAGGGCTTGAGTCTACCTGGATGAAAACT < 41bp 0.534239774458886 0.735618900306612 NA NA prediction 0.402758251695452 Functional Gain - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134463966 chr10:134463965 stopgain 0.957 1 20 hm7G_associated_SNPs_37293 0 0 1 0 2 INPP5A chr10:134463922 3'AG 134463922 Downstream 44bp 34330 chr10 134463965 134463965 1 + C T BRCA 134463966 + 134463946 134463986 41 GAAAGAATATAACAGGGCTCGAGTCTACCTGGATGAAAACT GAAAGAATATAACAGGGCTTGAGTCTACCTGGATGAAAACT < 41bp 0.534239774458886 0.735618900306612 NA NA prediction 0.402758251695452 Functional Gain - INPP5A ENSG00000068383 CDS Human protein_coding chr10:134463966 chr10:134463965 stopgain 0.957 1 20 hm7G_associated_SNPs_37293 0 0 1 0 2 INPP5A chr10:134464009 5'GT 134464009 Upstream 45bp 34331 chr17 7414824 7414824 1 + G A UCEC 7414825 + 7414805 7414845 41 GTGGATCCTGGAGACGGACGGCGTGAGCTTGATGCGGGTGC GTGGATCCTGGAGACGGACAGCGTGAGCTTGATGCGGGTGC < 41bp 0.537475849192413 0.738852588264332 NA NA prediction 0.402753478143837 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7414825 chr17:7414824 nonsynonymous SNV 0.437 3 20 hm7G_associated_SNPs_37295 0 0 1 0 2 POLR2A chr17:7414725 3'AG 7414725 Downstream 100bp 34332 chr17 7414824 7414824 1 + G A UCEC 7414825 + 7414805 7414845 41 GTGGATCCTGGAGACGGACGGCGTGAGCTTGATGCGGGTGC GTGGATCCTGGAGACGGACAGCGTGAGCTTGATGCGGGTGC < 41bp 0.537475849192413 0.738852588264332 NA NA prediction 0.402753478143837 Functional Gain - POLR2A ENSG00000181222 CDS Human protein_coding chr17:7414825 chr17:7414824 nonsynonymous SNV 0.437 3 20 hm7G_associated_SNPs_37295 0 0 1 0 2 POLR2A chr17:7414907 5'GT 7414907 Upstream 84bp 34333 chr1 151139440 151139440 1 + G A UCEC 151139441 + 151139421 151139461 41 CCATCTGCCCCCATCGACCGGTACTGGACACCCTGGCCATG CCATCTGCCCCCATCGACCAGTACTGGACACCCTGGCCATG < 41bp 0.553398194017264 0.754773718803055 NA NA prediction 0.402751049571582 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151139441 chr1:151139440 synonymous SNV . 0 20 hm7G_associated_SNPs_37298 0 0 1 0 2 SCNM1;TNFAIP8L2-SCNM1 chr1:151139410 3'AG 151139410 Downstream 31bp 34334 chr1 151139440 151139440 1 + G A UCEC 151139441 + 151139421 151139461 41 CCATCTGCCCCCATCGACCGGTACTGGACACCCTGGCCATG CCATCTGCCCCCATCGACCAGTACTGGACACCCTGGCCATG < 41bp 0.553398194017264 0.754773718803055 NA NA prediction 0.402751049571582 Functional Gain - SCNM1;TNFAIP8L2-SCNM1 ENSG00000163156 CDS Human protein_coding chr1:151139441 chr1:151139440 synonymous SNV . 0 20 hm7G_associated_SNPs_37298 0 0 1 0 2 SCNM1;TNFAIP8L2-SCNM1 chr1:151139498 5'GT 151139498 Upstream 59bp 34335 chr20 42198070 42198070 1 + C T GBM 42198071 + 42198051 42198091 41 TGTGCTTCTGAAGAACGTGCGGCACCCCTTCCTCGTGGGCC TGTGCTTCTGAAGAACGTGTGGCACCCCTTCCTCGTGGGCC < 41bp 0.558947261656137 0.760322714586144 NA NA prediction 0.402750905860015 Functional Gain - SGK2 ENSG00000101049 CDS Human protein_coding chr20:42198071 chr20:42198070 nonsynonymous SNV 0.825 3 20 hm7G_associated_SNPs_37299 0 0 1 0 1 SGK2 chr20:42198025 3'AG 42198025 Downstream 46bp 34336 chr8 26510812 26510812 1 + C T COAD 26510813 + 26510793 26510833 41 GTGTGTGAAGTGTCTGTGACGCCCAAGACAGTCACTCCAGC GTGTGTGAAGTGTCTGTGATGCCCAAGACAGTCACTCCAGC < 41bp 0.550033700270413 0.75140827796355 NA NA prediction 0.402749155386275 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26510813 chr8:26510812 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_37301 0 0 1 0 1 DPYSL2 chr8:26510748 3'AG 26510748 Downstream 65bp 34337 chr6 117201750 117201750 1 + C T UCEC 117201751 + 117201731 117201771 41 TGAAGGAGTTTGCTTACCACGGTGCATTCTTTATGCACACT TGAAGGAGTTTGCTTACCATGGTGCATTCTTTATGCACACT < 41bp 0.531093510516138 0.732467306357669 NA NA prediction 0.402747591683063 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117201751 chr6:117201750 nonsynonymous SNV 0.983 5 20 hm7G_associated_SNPs_37303 0 0 1 0 2 RFX6 chr6:117201707 3'AG 117201707 Downstream 44bp 34338 chr6 117201750 117201750 1 + C T UCEC 117201751 + 117201731 117201771 41 TGAAGGAGTTTGCTTACCACGGTGCATTCTTTATGCACACT TGAAGGAGTTTGCTTACCATGGTGCATTCTTTATGCACACT < 41bp 0.531093510516138 0.732467306357669 NA NA prediction 0.402747591683063 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117201751 chr6:117201750 nonsynonymous SNV 0.983 5 20 hm7G_associated_SNPs_37303 0 0 1 0 2 RFX6 chr6:117201830 5'GT 117201830 Upstream 81bp 34339 chr19 17450292 17450292 1 + C T LUSC 17450293 + 17450273 17450313 41 AGCCAGGGACCACCCGTGACGTGCTGGAGACCCCAGTCGAC AGCCAGGGACCACCCGTGATGTGCTGGAGACCCCAGTCGAC < 41bp 0.500153354818922 0.701527103245028 NA NA prediction 0.402747496852213 Functional Gain - GTPBP3 ENSG00000130299 CDS Human protein_coding chr19:17450293 chr19:17450292 synonymous SNV . 0 20 hm7G_associated_SNPs_37304 0 0 1 0 1 GTPBP3 chr19:17450243 3'AG 17450243 Downstream 50bp 34340 chr3 39108317 39108317 1 + G T UCEC 39108318 + 39108298 39108338 41 ACAGACAAATATTCCTTTGGGATGTGAATACTCTAACAGCA ACAGACAAATATTCCTTTGTGATGTGAATACTCTAACAGCA < 41bp 0.39106569265591 0.701372816965723 NA NA prediction 0.402745633931446 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39108318 chr3:39108317 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_37306 0 0 1 0 2 WDR48 chr3:39108237 3'AG 39108237 Downstream 81bp 34341 chr3 39108317 39108317 1 + G T UCEC 39108318 + 39108298 39108338 41 ACAGACAAATATTCCTTTGGGATGTGAATACTCTAACAGCA ACAGACAAATATTCCTTTGTGATGTGAATACTCTAACAGCA < 41bp 0.39106569265591 0.701372816965723 NA NA prediction 0.402745633931446 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39108318 chr3:39108317 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_37306 0 0 1 0 2 WDR48 chr3:39108366 5'GT 39108366 Upstream 50bp 34342 chr19 33604704 33604704 1 + C T GBM 33604705 + 33604685 33604725 41 TGGCTTACCAAGAGTGAAGCGTGACAAGTACTCAGTCTTCA TGGCTTACCAAGAGTGAAGTGTGACAAGTACTCAGTCTTCA < 41bp 0.528602310598052 0.729975069836605 NA NA prediction 0.402745518477106 Functional Gain - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33604705 chr19:33604704 nonsynonymous SNV 0.672 4 20 hm7G_associated_SNPs_37307 0 0 1 0 1 GPATCH1 chr19:33604673 3'AG 33604673 Downstream 32bp 34343 chr1 11562886 11562886 1 + G A LUAD 11562887 + 11562867 11562907 41 CAGTAGATGACCGCTGGGAGGAACAACGGGCTAAGTTTCAG CAGTAGATGACCGCTGGGAAGAACAACGGGCTAAGTTTCAG < 41bp 0.53122483188551 0.732597577282689 NA NA prediction 0.402745490794358 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11562887 chr1:11562886 synonymous SNV . 0 20 hm7G_associated_SNPs_37308 0 0 0 0 1 DISP3 chr1:11562954 5'GT 11562954 Upstream 69bp 34344 chr19 44622364 44622364 1 + G A ESCA 44622365 + 44622345 44622385 41 CAGTGACCTTCAAGGACGTGGCTGTGGTCTTCACTGAGGAA CAGTGACCTTCAAGGACGTAGCTGTGGTCTTCACTGAGGAA < 41bp 0.485934126398677 0.701370914251941 NA NA prediction 0.402741828503881 Functional Gain - ZNF225 ENSG00000256294 CDS Human protein_coding chr19:44622365 chr19:44622364 synonymous SNV . 0 20 hm7G_associated_SNPs_37310 0 0 0 0 1 ZNF225 chr19:44622341 3'AG 44622341 Downstream 24bp 34345 chr20 19970723 19970723 1 + G A BRCA 19970724 + 19970704 19970744 41 ACGTGGAGGCCATGCTGAAGGACTTTCACATGGCCGATGGC ACGTGGAGGCCATGCTGAAAGACTTTCACATGGCCGATGGC < 41bp 0.517147314825249 0.718516329464701 NA NA prediction 0.402738029278903 Functional Gain - RIN2 ENSG00000132669 CDS Human protein_coding chr20:19970724 chr20:19970723 synonymous SNV . 0 20 hm7G_associated_SNPs_37311 0 0 0 0 1 RIN2 chr20:19970650 3'AG 19970650 Downstream 74bp 34346 chr17 72443101 72443101 1 + G T UCEC 72443102 + 72443082 72443122 41 ACTCGGCCCAGAGCCACCAGGCGGCCACACCGCCGAAAGAC ACTCGGCCCAGAGCCACCATGCGGCCACACCGCCGAAAGAC < 41bp 0.341909566019313 0.701368073831643 NA NA prediction 0.402736147663286 Functional Gain - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72443102 chr17:72443101 nonsynonymous SNV 0.866 0 20 hm7G_associated_SNPs_37312 0 0 1 0 1 GPRC5C chr17:72443137 5'GT 72443137 Upstream 37bp 34347 chr10 71151991 71151991 1 + G A PRAD 71151992 + 71151972 71152012 41 GGGGGCCTTTGGGGACAACGGGTGTCTGGATGATATCAGGA GGGGGCCTTTGGGGACAACAGGTGTCTGGATGATATCAGGA < 41bp 0.530565508977895 0.731932953160295 NA NA prediction 0.402734888364801 Functional Gain - HK1 ENSG00000156515 CDS Human protein_coding chr10:71151992 chr10:71151991 nonsynonymous SNV 0.985 5 20 hm7G_associated_SNPs_37313 0 0 1 0 1 HK1 chr10:71152064 5'GT 71152064 Upstream 74bp 34348 chr22 35723368 35723368 1 + G T LUSC 35723369 + 35723349 35723389 41 AGGCCGAGCCCGCAGACCTGGAGCTGCTGCAGGTGAGCAGG AGGCCGAGCCCGCAGACCTTGAGCTGCTGCAGGTGAGCAGG < 41bp 0.34551760294017 0.701366522626797 NA NA prediction 0.402733045253595 Functional Gain - TOM1 ENSG00000100284 CDS Human protein_coding chr22:35723369 chr22:35723368 synonymous SNV . 0 20 hm7G_associated_SNPs_37316 0 0 1 0 1 TOM1 chr22:35723380 5'GT 35723380 Upstream 13bp 34349 chr9 115567073 115567073 1 + C T GBM 115567074 + 115567054 115567094 41 AGGATCTCATTTTGCCCAACGGTGGTACTCCAGCAGGTACT AGGATCTCATTTTGCCCAATGGTGGTACTCCAGCAGGTACT < 41bp 0.549257136062855 0.75062337946106 NA NA prediction 0.402732486796408 Functional Gain - SNX30 ENSG00000148158 CDS Human protein_coding chr9:115567074 chr9:115567073 synonymous SNV . 0 20 hm7G_associated_SNPs_37317 0 0 0 0 1 SNX30 chr9:115567056 3'AG 115567056 Downstream 18bp 34350 chr22 39817937 39817937 1 + G A LUAD 39817938 + 39817918 39817958 41 TGTCGGAGGGGTTGTACAAGGCCCTAGAGGCAGCCCATGGG TGTCGGAGGGGTTGTACAAAGCCCTAGAGGCAGCCCATGGG < 41bp 0.580892744534042 0.782254693485715 NA NA prediction 0.402723897903347 Functional Gain - TAB1 ENSG00000100324 CDS Human protein_coding chr22:39817938 chr22:39817937 synonymous SNV . 0 20 hm7G_associated_SNPs_37321 0 0 1 0 1 TAB1 chr22:39817976 5'GT 39817976 Upstream 40bp 34351 chr15 85147523 85147523 1 + C T PAAD 85147524 + 85147504 85147544 41 GAAAGCAGTGAGGAGGCAGCGGCCCTGGTGGAAGACTTGAC GAAAGCAGTGAGGAGGCAGTGGCCCTGGTGGAAGACTTGAC < 41bp 0.526240953989518 0.727600324585439 NA NA prediction 0.402718741191841 Functional Gain - ZSCAN2 ENSG00000176371 CDS Human protein_coding chr15:85147524 chr15:85147523 nonsynonymous SNV 0.944 0 20 hm7G_associated_SNPs_37323 0 0 1 0 2 ZSCAN2 chr15:85147561 5'GT 85147561 Upstream 39bp 34352 chr15 85147523 85147523 1 + C T PAAD 85147524 + 85147504 85147544 41 GAAAGCAGTGAGGAGGCAGCGGCCCTGGTGGAAGACTTGAC GAAAGCAGTGAGGAGGCAGTGGCCCTGGTGGAAGACTTGAC < 41bp 0.526240953989518 0.727600324585439 NA NA prediction 0.402718741191841 Functional Gain - ZSCAN2 ENSG00000176371 CDS Human protein_coding chr15:85147524 chr15:85147523 nonsynonymous SNV 0.944 0 20 hm7G_associated_SNPs_37323 0 0 1 0 2 ZSCAN2 chr15:85147564 5'GT 85147564 Upstream 42bp 34353 chr2 183993140 183993140 1 + G T LUSC 183993141 + 183993121 183993161 41 ACAACCTCGATCAATTAGTGGCCCTTCAGTAGGAGTAATGG ACAACCTCGATCAATTAGTTGCCCTTCAGTAGGAGTAATGG < 41bp 0.692483047432624 0.893841835883366 NA NA prediction 0.402717576901483 Functional Gain - NUP35 ENSG00000163002 CDS Human protein_coding chr2:183993141 chr2:183993140 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_37324 0 0 1 0 1 NUP35 chr2:183993185 5'GT 183993185 Upstream 46bp 34354 chr14 76948403 76948403 1 + C T UCEC 76948404 + 76948384 76948424 41 AGGCCGTCAGAAATACAAGCGACGGCTGGACTCAGAGAGCA AGGCCGTCAGAAATACAAGTGACGGCTGGACTCAGAGAGCA < 41bp 0.547804121962949 0.749161864254312 NA NA prediction 0.402715484582725 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76948404 chr14:76948403 stopgain 1.000 1 20 hm7G_associated_SNPs_37326 0 0 1 0 2 ESRRB chr14:76948359 3'AG 76948359 Downstream 45bp 34355 chr14 76948403 76948403 1 + C T UCEC 76948404 + 76948384 76948424 41 AGGCCGTCAGAAATACAAGCGACGGCTGGACTCAGAGAGCA AGGCCGTCAGAAATACAAGTGACGGCTGGACTCAGAGAGCA < 41bp 0.547804121962949 0.749161864254312 NA NA prediction 0.402715484582725 Functional Gain - ESRRB ENSG00000119715 CDS Human protein_coding chr14:76948404 chr14:76948403 stopgain 1.000 1 20 hm7G_associated_SNPs_37326 0 0 1 0 2 ESRRB chr14:76948469 5'GT 76948469 Upstream 67bp 34356 chr5 128368807 128368807 1 + G T STAD 128368808 + 128368788 128368828 41 TTGCTTTACAGGAAAAAATGGAAGCAACAGGAACATTCAAA TTGCTTTACAGGAAAAAATTGAAGCAACAGGAACATTCAAA < 41bp 0.688447903057783 0.889801496957484 NA NA prediction 0.402707187799402 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128368808 chr5:128368807 nonsynonymous SNV 0.979 1 20 hm7G_associated_SNPs_37327 0 0 0 0 1 SLC27A6 chr5:128368799 3'AG 128368799 Downstream 9bp 34357 chr17 42152399 42152399 1 + C T SKCM 42152400 + 42152380 42152420 41 CTTTTGGCGGTTGGCTTGTCGCGAATCTTCATCTTAGCACA CTTTTGGCGGTTGGCTTGTTGCGAATCTTCATCTTAGCACA < 41bp 0.537959123212679 0.739311495087775 NA NA prediction 0.402704743750192 Functional Gain - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42152400 chr17:42152399 nonsynonymous SNV 0.810 5 20 hm7G_associated_SNPs_37329 0 0 1 0 2 G6PC3 chr17:42152337 3'AG 42152337 Downstream 63bp 34358 chr17 42152399 42152399 1 + C T SKCM 42152400 + 42152380 42152420 41 CTTTTGGCGGTTGGCTTGTCGCGAATCTTCATCTTAGCACA CTTTTGGCGGTTGGCTTGTTGCGAATCTTCATCTTAGCACA < 41bp 0.537959123212679 0.739311495087775 NA NA prediction 0.402704743750192 Functional Gain - G6PC3 ENSG00000141349 CDS Human protein_coding chr17:42152400 chr17:42152399 nonsynonymous SNV 0.810 5 20 hm7G_associated_SNPs_37329 0 0 1 0 2 G6PC3 chr17:42152455 5'GT 42152455 Upstream 57bp 34359 chr19 18965447 18965447 1 + C T rs144265702 18965448 + 18965428 18965468 41 CCATTGAGCTGCGGAGCAGCGTGGGTGCACCTGTGGAGGTG CCATTGAGCTGCGGAGCAGTGTGGGTGCACCTGTGGAGGTG < 41bp 0.512677153854883 0.714026706545883 NA NA prediction 0.402699105382001 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18965448 chr19:18965447 synonymous SNV . 0 20 hm7G_associated_SNPs_37333 0 0 1 0 2 UPF1 chr19:18965410 3'AG 18965410 Downstream 38bp 34360 chr19 18965447 18965447 1 + C T rs144265702 18965448 + 18965428 18965468 41 CCATTGAGCTGCGGAGCAGCGTGGGTGCACCTGTGGAGGTG CCATTGAGCTGCGGAGCAGTGTGGGTGCACCTGTGGAGGTG < 41bp 0.512677153854883 0.714026706545883 NA NA prediction 0.402699105382001 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18965448 chr19:18965447 synonymous SNV . 0 20 hm7G_associated_SNPs_37333 0 0 1 0 2 UPF1 chr19:18965518 5'GT 18965518 Upstream 72bp 34361 chr10 118310653 118310653 1 + G T SARC 118310654 + 118310634 118310674 41 AACTGTATCTGTGTGGACTGGAAAGGTGGCTCCCGAACTGG AACTGTATCTGTGTGGACTTGAAAGGTGGCTCCCGAACTGG < 41bp 0.708511098279041 0.909860136908771 NA NA prediction 0.40269807725946 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118310654 chr10:118310653 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_37334 0 0 0 0 2 PNLIP chr10:118310610 3'AG 118310610 Downstream 44bp 34362 chr10 118310653 118310653 1 + G T SARC 118310654 + 118310634 118310674 41 AACTGTATCTGTGTGGACTGGAAAGGTGGCTCCCGAACTGG AACTGTATCTGTGTGGACTTGAAAGGTGGCTCCCGAACTGG < 41bp 0.708511098279041 0.909860136908771 NA NA prediction 0.40269807725946 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118310654 chr10:118310653 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_37334 0 0 0 0 2 PNLIP chr10:118310744 5'GT 118310744 Upstream 92bp 34363 chr12 121164962 121164962 1 + G A PRAD 121164963 + 121164943 121164983 41 TTCCCATTGCAGCCCAGGTGGATAAGGAACATCTCTTCCCA TTCCCATTGCAGCCCAGGTAGATAAGGAACATCTCTTCCCA < 41bp 0.550961845641797 0.752310857713307 NA NA prediction 0.40269802414302 Functional Gain - ACADS ENSG00000122971 CDS Human protein_coding chr12:121164963 chr12:121164962 synonymous SNV . 0 20 hm7G_associated_SNPs_37335 0 0 1 0 1 ACADS chr12:121164992 5'GT 121164992 Upstream 31bp 34364 chr7 55259433 55259433 1 + C T UCEC 55259434 + 55259414 55259454 41 CATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACC CATGAACTACTTGGAGGACTGTCGCTTGGTGCACCGCGACC < 41bp 0.498331739863496 0.701347821028348 NA NA prediction 0.402695642056695 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55259434 chr7:55259433 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_37338 1 0 1 0 1 EGFR chr7:55259412 3'AG 55259412 Downstream 22bp 34365 chr11 65305605 65305605 1 + C T rs576776296 65305606 + 65305586 65305626 41 GGGGTGGCCCAGAGTCCAGCGACAAGGGCGACCCCTTCGCT GGGGTGGCCCAGAGTCCAGTGACAAGGGCGACCCCTTCGCT < 41bp 0.527422385935866 0.728765557419448 NA NA prediction 0.402686342967163 Functional Gain - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65305606 chr11:65305605 nonsynonymous SNV 0.074 0 20 hm7G_associated_SNPs_37340 0 0 1 0 1 SCYL1 chr11:65305653 5'GT 65305653 Upstream 49bp 34366 chr19 14040372 14040372 1 + G A UCEC 14040373 + 14040353 14040393 41 GCCCTCAGGCAGGCGCGGCGGCCGGTGCCCCCAGAAGTGGC GCCCTCAGGCAGGCGCGGCAGCCGGTGCCCCCAGAAGTGGC < 41bp 0.47996391908336 0.701343016827318 NA NA prediction 0.402686033654636 Functional Gain - CC2D1A ENSG00000132024 CDS Human protein_coding chr19:14040373 chr19:14040372 nonsynonymous SNV 0.929 0 20 hm7G_associated_SNPs_37341 0 0 1 0 1 CC2D1A chr19:14040347 3'AG 14040347 Downstream 26bp 34367 chr1 33060735 33060735 1 + C T UCEC 33060736 + 33060716 33060756 41 AGACCTAAAGCGCCACCTTCGTTGTCATACAGGAGAAAGGC AGACCTAAAGCGCCACCTTTGTTGTCATACAGGAGAAAGGC < 41bp 0.497240362133331 0.70134042717554 NA NA prediction 0.40268085435108 Functional Gain - ZBTB8A ENSG00000160062 CDS Human protein_coding chr1:33060736 chr1:33060735 nonsynonymous SNV 0.964 3 20 hm7G_associated_SNPs_37345 0 0 0 0 2 ZBTB8A chr1:33060655 3'AG 33060655 Downstream 81bp 34368 chr1 33060735 33060735 1 + C T UCEC 33060736 + 33060716 33060756 41 AGACCTAAAGCGCCACCTTCGTTGTCATACAGGAGAAAGGC AGACCTAAAGCGCCACCTTTGTTGTCATACAGGAGAAAGGC < 41bp 0.497240362133331 0.70134042717554 NA NA prediction 0.40268085435108 Functional Gain - ZBTB8A ENSG00000160062 CDS Human protein_coding chr1:33060736 chr1:33060735 nonsynonymous SNV 0.964 3 20 hm7G_associated_SNPs_37345 0 0 0 0 2 ZBTB8A chr1:33060824 5'GT 33060824 Upstream 90bp 34369 chrX 119048781 119048781 1 + C T OV 119048782 + 119048762 119048802 41 TCTCAACTGCTGACCTACCCGTAGCACGAATCTCTGCTGGT TCTCAACTGCTGACCTACCTGTAGCACGAATCTCTGCTGGT < 41bp 0.522508557477981 0.723848047333122 NA NA prediction 0.402678979710283 Functional Gain - AKAP14 ENSG00000186471 CDS Human protein_coding chrX:119048782 chrX:119048781 synonymous SNV . 0 20 hm7G_associated_SNPs_37346 0 0 0 0 1 AKAP14 chrX:119048841 5'GT 119048841 Upstream 61bp 34370 chr16 31123468 31123468 1 + G A SKCM 31123469 + 31123449 31123489 41 TTCGGGTTGCCCACGTCACGGGCCTACGCGGAGTACCTCGG TTCGGGTTGCCCACGTCACAGGCCTACGCGGAGTACCTCGG < 41bp 0.589257092275736 0.790593804546612 NA NA prediction 0.402673424541752 Functional Gain - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31123469 chr16:31123468 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_37348 0 0 1 0 1 BCKDK chr16:31123442 3'AG 31123442 Downstream 27bp 34371 chr19 50545052 50545052 1 + G A LUAD 50545053 + 50545033 50545073 41 TCTGGAGCCTCTGGCAGGAGGAAGCCCAGAAGCAACAAGCC TCTGGAGCCTCTGGCAGGAAGAAGCCCAGAAGCAACAAGCC < 41bp 0.558628657540438 0.759964726164104 NA NA prediction 0.402672137247331 Functional Gain - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50545053 chr19:50545052 nonsynonymous SNV 0.309 0 20 hm7G_associated_SNPs_37350 0 0 1 0 2 ZNF473 chr19:50544987 3'AG 50544987 Downstream 66bp 34372 chr19 50545052 50545052 1 + G A LUAD 50545053 + 50545033 50545073 41 TCTGGAGCCTCTGGCAGGAGGAAGCCCAGAAGCAACAAGCC TCTGGAGCCTCTGGCAGGAAGAAGCCCAGAAGCAACAAGCC < 41bp 0.558628657540438 0.759964726164104 NA NA prediction 0.402672137247331 Functional Gain - ZNF473 ENSG00000142528 CDS Human protein_coding chr19:50545053 chr19:50545052 nonsynonymous SNV 0.309 0 20 hm7G_associated_SNPs_37350 0 0 1 0 2 ZNF473 chr19:50545076 5'GT 50545076 Upstream 25bp 34373 chr11 12376337 12376337 1 + G T UCEC 12376338 + 12376318 12376358 41 TTTTCTCACCCAGGGCCCAGGAACTGGAATTAGAAGATCAT TTTTCTCACCCAGGGCCCATGAACTGGAATTAGAAGATCAT < 41bp 0.702189485421504 0.903525438202599 NA NA prediction 0.402671905562189 Functional Gain - MICALCL ENSG00000133808 CDS Human protein_coding chr11:12376338 chr11:12376337 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_37351 0 0 0 0 1 MICALCL chr11:12376331 3'AG 12376331 Downstream 7bp 34374 chr3 9731738 9731738 1 + G A rs191862472 9731739 + 9731719 9731759 41 CTTCCCAGCAGGGGCTGGCGGAAGCCAGGTCTTCCAGCTCC CTTCCCAGCAGGGGCTGGCAGAAGCCAGGTCTTCCAGCTCC < 41bp 0.50013306318162 0.701466535945598 NA NA prediction 0.402666945527956 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9731739 chr3:9731738 synonymous SNV 0.070 0 20 hm7G_associated_SNPs_37354 0 0 1 0 2 MTMR14 chr3:9731648 3'AG 9731648 Downstream 91bp 34375 chr3 9731738 9731738 1 + G A rs191862472 9731739 + 9731719 9731759 41 CTTCCCAGCAGGGGCTGGCGGAAGCCAGGTCTTCCAGCTCC CTTCCCAGCAGGGGCTGGCAGAAGCCAGGTCTTCCAGCTCC < 41bp 0.50013306318162 0.701466535945598 NA NA prediction 0.402666945527956 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9731739 chr3:9731738 synonymous SNV 0.070 0 20 hm7G_associated_SNPs_37354 0 0 1 0 2 MTMR14 chr3:9731827 5'GT 9731827 Upstream 90bp 34376 chr8 132991119 132991119 1 + C T UCEC 132991120 + 132991100 132991140 41 TCTGGATATAAAGCGAAGACGATTGTTACTGCACTGCCAGG TCTGGATATAAAGCGAAGATGATTGTTACTGCACTGCCAGG < 41bp 0.490587444352464 0.701331117871502 NA NA prediction 0.402662235743004 Functional Gain - EFR3A ENSG00000132294 CDS Human protein_coding chr8:132991120 chr8:132991119 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_37355 0 0 1 0 1 EFR3A chr8:132991094 3'AG 132991094 Downstream 26bp 34377 chr11 122817235 122817235 1 + C T rs143699753 122817236 + 122817216 122817256 41 TCTTCTTCTGACAGCCAGACGGTTAGAGCTTCTCCAGATTC TCTTCTTCTGACAGCCAGATGGTTAGAGCTTCTCCAGATTC < 41bp 0.540176604122489 0.741506012938794 NA NA prediction 0.40265881763261 Functional Gain - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122817236 chr11:122817235 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_37356 0 0 0 0 1 C11orf63 chr11:122817206 3'AG 122817206 Downstream 30bp 34378 chr15 42702819 42702819 1 + G A CESC 42702820 + 42702800 42702840 41 CTATGACACAGACCAGTCCGGCACCATCAACAGCTACGAGA CTATGACACAGACCAGTCCAGCACCATCAACAGCTACGAGA < 41bp 0.50131824141954 0.702646819287482 NA NA prediction 0.402657155735883 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42702820 chr15:42702819 nonsynonymous SNV 0.894 2 20 hm7G_associated_SNPs_37357 1 0 0 0 2 CAPN3 chr15:42702786 3'AG 42702786 Downstream 34bp 34379 chr15 42702819 42702819 1 + G A CESC 42702820 + 42702800 42702840 41 CTATGACACAGACCAGTCCGGCACCATCAACAGCTACGAGA CTATGACACAGACCAGTCCAGCACCATCAACAGCTACGAGA < 41bp 0.50131824141954 0.702646819287482 NA NA prediction 0.402657155735883 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42702820 chr15:42702819 nonsynonymous SNV 0.894 2 20 hm7G_associated_SNPs_37357 1 0 0 0 2 CAPN3 chr15:42702864 5'GT 42702864 Upstream 46bp 34380 chr2 170912049 170912049 1 + C T COAD 170912050 + 170912030 170912070 41 CACTCTCAGTTAAATGCAGCGAAGAAGATAGGTCAGCCTGG CACTCTCAGTTAAATGCAGTGAAGAAGATAGGTCAGCCTGG < 41bp 0.528516118271707 0.729844515911835 NA NA prediction 0.402656795280255 Functional Gain - UBR3 ENSG00000144357 CDS Human protein_coding chr2:170912050 chr2:170912049 synonymous SNV . 0 20 hm7G_associated_SNPs_37358 0 0 1 0 2 UBR3 chr2:170911970 3'AG 170911970 Downstream 80bp 34381 chr2 170912049 170912049 1 + C T COAD 170912050 + 170912030 170912070 41 CACTCTCAGTTAAATGCAGCGAAGAAGATAGGTCAGCCTGG CACTCTCAGTTAAATGCAGTGAAGAAGATAGGTCAGCCTGG < 41bp 0.528516118271707 0.729844515911835 NA NA prediction 0.402656795280255 Functional Gain - UBR3 ENSG00000144357 CDS Human protein_coding chr2:170912050 chr2:170912049 synonymous SNV . 0 20 hm7G_associated_SNPs_37358 0 0 1 0 2 UBR3 chr2:170912094 5'GT 170912094 Upstream 46bp 34382 chr1 160098840 160098840 1 + C T STAD 160098841 + 160098821 160098861 41 CTGGTCTCTGCAACCGCGCCGTCTTCAAGGCAGGACAGGAG CTGGTCTCTGCAACCGCGCTGTCTTCAAGGCAGGACAGGAG < 41bp 0.554103131555946 0.755430314530853 NA NA prediction 0.402654365949813 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098841 chr1:160098840 synonymous SNV . 0 20 hm7G_associated_SNPs_37359 0 0 0 0 2 ATP1A2 chr1:160098770 3'AG 160098770 Downstream 71bp 34383 chr1 160098840 160098840 1 + C T STAD 160098841 + 160098821 160098861 41 CTGGTCTCTGCAACCGCGCCGTCTTCAAGGCAGGACAGGAG CTGGTCTCTGCAACCGCGCTGTCTTCAAGGCAGGACAGGAG < 41bp 0.554103131555946 0.755430314530853 NA NA prediction 0.402654365949813 Functional Gain - ATP1A2 ENSG00000018625 CDS Human protein_coding chr1:160098841 chr1:160098840 synonymous SNV . 0 20 hm7G_associated_SNPs_37359 0 0 0 0 2 ATP1A2 chr1:160098879 5'GT 160098879 Upstream 40bp 34384 chr19 56565093 56565093 1 + C T rs201338049 56565094 + 56565074 56565114 41 CTGAAGAGCCTGGATCTCACGGACAATGCCCTGGGTGACGG CTGAAGAGCCTGGATCTCATGGACAATGCCCTGGGTGACGG < 41bp 0.54778654621643 0.74911238213229 NA NA prediction 0.402651671831719 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565094 chr19:56565093 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_37364 0 0 0 0 2 NLRP5 chr19:56565004 3'AG 56565004 Downstream 90bp 34385 chr19 56565093 56565093 1 + C T rs201338049 56565094 + 56565074 56565114 41 CTGAAGAGCCTGGATCTCACGGACAATGCCCTGGGTGACGG CTGAAGAGCCTGGATCTCATGGACAATGCCCTGGGTGACGG < 41bp 0.54778654621643 0.74911238213229 NA NA prediction 0.402651671831719 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56565094 chr19:56565093 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_37364 0 0 0 0 2 NLRP5 chr19:56565174 5'GT 56565174 Upstream 82bp 34386 chr11 113215077 113215077 1 + C T STAD 113215078 + 113215058 113215098 41 CTCCAAGGTCCTGGCCATCCGGCAGCAGAGCTTTGCCCTGC CTCCAAGGTCCTGGCCATCTGGCAGCAGAGCTTTGCCCTGC < 41bp 0.553871335099524 0.755193546668495 NA NA prediction 0.40264442313794 Functional Gain - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113215078 chr11:113215077 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_37365 0 0 0 0 2 TTC12 chr11:113214994 3'AG 113214994 Downstream 84bp 34387 chr11 113215077 113215077 1 + C T STAD 113215078 + 113215058 113215098 41 CTCCAAGGTCCTGGCCATCCGGCAGCAGAGCTTTGCCCTGC CTCCAAGGTCCTGGCCATCTGGCAGCAGAGCTTTGCCCTGC < 41bp 0.553871335099524 0.755193546668495 NA NA prediction 0.40264442313794 Functional Gain - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113215078 chr11:113215077 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_37365 0 0 0 0 2 TTC12 chr11:113215162 5'GT 113215162 Upstream 86bp 34388 chr17 73729676 73729676 1 + C T STAD 73729677 + 73729657 73729697 41 GCCGTGGGGAGTGCCAGTGCGGGCACTGTGTGTGCTACGGC GCCGTGGGGAGTGCCAGTGTGGGCACTGTGTGTGCTACGGC < 41bp 0.547674658557704 0.74899678515387 NA NA prediction 0.402644253192334 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73729677 chr17:73729676 synonymous SNV . 0 20 hm7G_associated_SNPs_37366 1 0 0 0 1 ITGB4 chr17:73729773 5'GT 73729773 Upstream 98bp 34389 chr20 45717935 45717935 1 + G A SKCM 45717936 + 45717916 45717956 41 AAAGAGGGAGACACAGACAGGCCGCACCGGGCCTCCGACGG AAAGAGGGAGACACAGACAAGCCGCACCGGGCCTCCGACGG < 41bp 0.480191499743522 0.70132113186453 NA NA prediction 0.402642263729061 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717936 chr20:45717935 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_37367 0 0 0 0 2 EYA2 chr20:45717878 3'AG 45717878 Downstream 58bp 34390 chr20 45717935 45717935 1 + G A SKCM 45717936 + 45717916 45717956 41 AAAGAGGGAGACACAGACAGGCCGCACCGGGCCTCCGACGG AAAGAGGGAGACACAGACAAGCCGCACCGGGCCTCCGACGG < 41bp 0.480191499743522 0.70132113186453 NA NA prediction 0.402642263729061 Functional Gain - EYA2 ENSG00000064655 CDS Human protein_coding chr20:45717936 chr20:45717935 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_37367 0 0 0 0 2 EYA2 chr20:45718020 5'GT 45718020 Upstream 86bp 34391 chr1 110168006 110168006 1 + C T COAD 110168007 + 110167987 110168027 41 CCCTGCCTCAAGCACTTCCCGCTCGACCTGCGCACGTCTAT CCCTGCCTCAAGCACTTCCTGCTCGACCTGCGCACGTCTAT < 41bp 0.494574596720448 0.701320765304783 NA NA prediction 0.402641530609566 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168007 chr1:110168006 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_37368 0 0 0 0 2 AMPD2 chr1:110167925 3'AG 110167925 Downstream 82bp 34392 chr1 110168006 110168006 1 + C T COAD 110168007 + 110167987 110168027 41 CCCTGCCTCAAGCACTTCCCGCTCGACCTGCGCACGTCTAT CCCTGCCTCAAGCACTTCCTGCTCGACCTGCGCACGTCTAT < 41bp 0.494574596720448 0.701320765304783 NA NA prediction 0.402641530609566 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110168007 chr1:110168006 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_37368 0 0 0 0 2 AMPD2 chr1:110168055 5'GT 110168055 Upstream 50bp 34393 chr11 46388505 46388505 1 + C T HNSC 46388506 + 46388486 46388526 41 CCCTACGGCGCAAGGCGGCCGGACCCCAGGCCTGGAGCGCC CCCTACGGCGCAAGGCGGCTGGACCCCAGGCCTGGAGCGCC < 41bp 0.497567607103244 0.70132054045611 NA NA prediction 0.40264108091222 Functional Gain - DGKZ ENSG00000149091 CDS Human protein_coding chr11:46388506 chr11:46388505 synonymous SNV . 0 20 hm7G_associated_SNPs_37369 0 0 0 0 1 DGKZ chr11:46388534 5'GT 46388534 Upstream 30bp 34394 chr5 133480540 133480540 1 + G A UCEC 133480541 + 133480521 133480561 41 TTGGCCTCAACCAGCAGACGGATTGGTGTGGTCCGTGCAGG TTGGCCTCAACCAGCAGACAGATTGGTGTGGTCCGTGCAGG < 41bp 0.494342986595797 0.701318344129082 NA NA prediction 0.402636688258164 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133480541 chr5:133480540 synonymous SNV . 0 20 hm7G_associated_SNPs_37370 0 0 0 0 2 TCF7 chr5:133480488 3'AG 133480488 Downstream 53bp 34395 chr5 133480540 133480540 1 + G A UCEC 133480541 + 133480521 133480561 41 TTGGCCTCAACCAGCAGACGGATTGGTGTGGTCCGTGCAGG TTGGCCTCAACCAGCAGACAGATTGGTGTGGTCCGTGCAGG < 41bp 0.494342986595797 0.701318344129082 NA NA prediction 0.402636688258164 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133480541 chr5:133480540 synonymous SNV . 0 20 hm7G_associated_SNPs_37370 0 0 0 0 2 TCF7 chr5:133480560 5'GT 133480560 Upstream 21bp 34396 chr1 9670662 9670662 1 + C T UCEC 9670663 + 9670643 9670683 41 CTCCAGCTCCGGCTCTCTGCGCCACCGCAGGCCCCTCATCA CTCCAGCTCCGGCTCTCTGTGCCACCGCAGGCCCCTCATCA < 41bp 0.507085150259597 0.708403081994334 NA NA prediction 0.402635863469474 Functional Gain - TMEM201 ENSG00000188807 CDS Human protein_coding chr1:9670663 chr1:9670662 nonsynonymous SNV 0.841 3 20 hm7G_associated_SNPs_37371 0 0 1 0 1 TMEM201 chr1:9670564 3'AG 9670564 Downstream 99bp 34397 chr2 29240745 29240745 1 + G A UCEC 29240746 + 29240726 29240766 41 GACGTCAGCATCATCCTGAGGAAGTGGGCCAGCCGGGCCTC GACGTCAGCATCATCCTGAAGAAGTGGGCCAGCCGGGCCTC < 41bp 0.559214031816344 0.760529811616262 NA NA prediction 0.402631559599835 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29240746 chr2:29240745 nonsynonymous SNV 0.350 0 20 hm7G_associated_SNPs_37375 0 0 0 0 2 TOGARAM2 chr2:29240658 3'AG 29240658 Downstream 88bp 34398 chr2 29240745 29240745 1 + G A UCEC 29240746 + 29240726 29240766 41 GACGTCAGCATCATCCTGAGGAAGTGGGCCAGCCGGGCCTC GACGTCAGCATCATCCTGAAGAAGTGGGCCAGCCGGGCCTC < 41bp 0.559214031816344 0.760529811616262 NA NA prediction 0.402631559599835 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29240746 chr2:29240745 nonsynonymous SNV 0.350 0 20 hm7G_associated_SNPs_37375 0 0 0 0 2 TOGARAM2 chr2:29240822 5'GT 29240822 Upstream 78bp 34399 chr10 105768031 105768031 1 + C T COAD 105768032 + 105768012 105768052 41 AGAGCACACAAATCGCTTGCGAGATGAAGCCAAACGCATCA AGAGCACACAAATCGCTTGTGAGATGAAGCCAAACGCATCA < 41bp 0.518538017352943 0.719853549675575 NA NA prediction 0.402631064645262 Functional Gain - SLK ENSG00000065613 CDS Human protein_coding chr10:105768032 chr10:105768031 stopgain 0.959 1 20 hm7G_associated_SNPs_37376 0 0 1 0 1 SLK chr10:105768114 5'GT 105768114 Upstream 84bp 34400 chr12 107245297 107245297 1 + C T CESC 107245298 + 107245278 107245318 41 TGTGAGAAATAAGCTGGTGCGCCTCATGACACATGTTGACC TGTGAGAAATAAGCTGGTGTGCCTCATGACACATGTTGACC < 41bp 0.542800809888796 0.744115444271544 NA NA prediction 0.402629268765496 Functional Gain - RIC8B ENSG00000111785 CDS Human protein_coding chr12:107245298 chr12:107245297 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37377 0 0 0 0 2 RIC8B chr12:107245228 3'AG 107245228 Downstream 70bp 34401 chr12 107245297 107245297 1 + C T CESC 107245298 + 107245278 107245318 41 TGTGAGAAATAAGCTGGTGCGCCTCATGACACATGTTGACC TGTGAGAAATAAGCTGGTGTGCCTCATGACACATGTTGACC < 41bp 0.542800809888796 0.744115444271544 NA NA prediction 0.402629268765496 Functional Gain - RIC8B ENSG00000111785 CDS Human protein_coding chr12:107245298 chr12:107245297 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37377 0 0 0 0 2 RIC8B chr12:107245372 5'GT 107245372 Upstream 76bp 34402 chr12 53684721 53684721 1 + C T UCEC 53684722 + 53684702 53684742 41 CCCTGCCCAGGAGGCCTCCCGCCTACAGGAGCTGCTACAGG CCCTGCCCAGGAGGCCTCCTGCCTACAGGAGCTGCTACAGG < 41bp 0.530691457977486 0.73200585697665 NA NA prediction 0.40262879799833 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53684722 chr12:53684721 nonsynonymous SNV 0.652 2 20 hm7G_associated_SNPs_37378 0 0 1 0 2 ESPL1 chr12:53684625 3'AG 53684625 Downstream 97bp 34403 chr12 53684721 53684721 1 + C T UCEC 53684722 + 53684702 53684742 41 CCCTGCCCAGGAGGCCTCCCGCCTACAGGAGCTGCTACAGG CCCTGCCCAGGAGGCCTCCTGCCTACAGGAGCTGCTACAGG < 41bp 0.530691457977486 0.73200585697665 NA NA prediction 0.40262879799833 Functional Gain - ESPL1 ENSG00000135476 CDS Human protein_coding chr12:53684722 chr12:53684721 nonsynonymous SNV 0.652 2 20 hm7G_associated_SNPs_37378 0 0 1 0 2 ESPL1 chr12:53684780 5'GT 53684780 Upstream 60bp 34404 chr3 9948689 9948689 1 + C T COAD 9948690 + 9948670 9948710 41 GCCTGAGGCCCGGGCTATTCGGGTGACCATATCTTCAGGCC GCCTGAGGCCCGGGCTATTTGGGTGACCATATCTTCAGGCC < 41bp 0.495519384331049 0.701314150274288 NA NA prediction 0.402628300548576 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9948690 chr3:9948689 nonsynonymous SNV 0.334 2 20 hm7G_associated_SNPs_37379 0 0 1 0 2 IL17RE chr3:9948645 3'AG 9948645 Downstream 45bp 34405 chr3 9948689 9948689 1 + C T COAD 9948690 + 9948670 9948710 41 GCCTGAGGCCCGGGCTATTCGGGTGACCATATCTTCAGGCC GCCTGAGGCCCGGGCTATTTGGGTGACCATATCTTCAGGCC < 41bp 0.495519384331049 0.701314150274288 NA NA prediction 0.402628300548576 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9948690 chr3:9948689 nonsynonymous SNV 0.334 2 20 hm7G_associated_SNPs_37379 0 0 1 0 2 IL17RE chr3:9948784 5'GT 9948784 Upstream 96bp 34406 chr16 30387814 30387814 1 + C T COAD 30387815 + 30387795 30387835 41 GCGGTCCCATCAACTTCACCGTCTTCCTGACCATGTTCGGG GCGGTCCCATCAACTTCACTGTCTTCCTGACCATGTTCGGG < 41bp 0.514398926842663 0.715712949107607 NA NA prediction 0.402628044529889 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387815 chr16:30387814 synonymous SNV . 0 20 hm7G_associated_SNPs_37380 0 0 0 0 1 MYLPF chr16:30387744 3'AG 30387744 Downstream 71bp 34407 chr11 66002812 66002812 1 + C T LUSC 66002813 + 66002793 66002833 41 GGGTGATGCAGTACGTCAACGGGGCAGCCACGACACACCAG GGGTGATGCAGTACGTCAATGGGGCAGCCACGACACACCAG < 41bp 0.55771068244843 0.759024291194711 NA NA prediction 0.402627217492562 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:66002813 chr11:66002812 synonymous SNV . 0 20 hm7G_associated_SNPs_37382 0 0 1 0 2 PACS1 chr11:66002772 3'AG 66002772 Downstream 41bp 34408 chr11 66002812 66002812 1 + C T LUSC 66002813 + 66002793 66002833 41 GGGTGATGCAGTACGTCAACGGGGCAGCCACGACACACCAG GGGTGATGCAGTACGTCAATGGGGCAGCCACGACACACCAG < 41bp 0.55771068244843 0.759024291194711 NA NA prediction 0.402627217492562 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:66002813 chr11:66002812 synonymous SNV . 0 20 hm7G_associated_SNPs_37382 0 0 1 0 2 PACS1 chr11:66002874 5'GT 66002874 Upstream 63bp 34409 chr16 50815257 50815257 1 + G T LUAD 50815258 + 50815238 50815278 41 GTGAAACTGAAGAGCTGCAGGCCTGACTCTAGGTTTGCATC GTGAAACTGAAGAGCTGCATGCCTGACTCTAGGTTTGCATC < 41bp 0.360759486556764 0.701311495150952 NA NA prediction 0.402622990301905 Functional Gain - CYLD ENSG00000083799 CDS Human protein_coding chr16:50815258 chr16:50815257 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_37384 0 0 1 0 1 CYLD chr16:50815322 5'GT 50815322 Upstream 66bp 34410 chr10 94109244 94109244 1 + C T BRCA 94109245 + 94109225 94109265 41 CTATGTGCTTAGACTGTGGCGCAAATACTCGAATAAACTAC CTATGTGCTTAGACTGTGGTGCAAATACTCGAATAAACTAC < 41bp 0.534768738081231 0.736079724269911 NA NA prediction 0.402621972377359 Functional Gain - MARCH5 ENSG00000198060 CDS Human protein_coding chr10:94109245 chr10:94109244 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37386 0 0 1 0 1 MARCH5 chr10:94109289 5'GT 94109289 Upstream 46bp 34411 chr16 89960147 89960147 1 + C T UCEC 89960148 + 89960128 89960168 41 CCTCCCAGGTCTGTCCATGCGGCTGCTGGAATCAAAAAAAG CCTCCCAGGTCTGTCCATGTGGCTGCTGGAATCAAAAAAAG < 41bp 0.55281519675095 0.754125500120738 NA NA prediction 0.402620606739577 Functional Gain - TCF25 ENSG00000141002 CDS Human protein_coding chr16:89960148 chr16:89960147 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37388 0 0 1 0 1 TCF25 chr16:89960136 3'AG 89960136 Downstream 12bp 34412 chr7 129946646 129946646 1 + G A SKCM 129946647 + 129946627 129946667 41 ATTGTATCTGATTACCAGAGGGATCCAGCTATCACCTCCAT ATTGTATCTGATTACCAGAAGGATCCAGCTATCACCTCCAT < 41bp 0.523188656918619 0.724497198588007 NA NA prediction 0.402617083338776 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946647 chr7:129946646 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_37389 0 0 0 0 2 CPA4 chr7:129946627 3'AG 129946627 Downstream 20bp 34413 chr7 129946646 129946646 1 + G A SKCM 129946647 + 129946627 129946667 41 ATTGTATCTGATTACCAGAGGGATCCAGCTATCACCTCCAT ATTGTATCTGATTACCAGAAGGATCCAGCTATCACCTCCAT < 41bp 0.523188656918619 0.724497198588007 NA NA prediction 0.402617083338776 Functional Gain - CPA4 ENSG00000128510 CDS Human protein_coding chr7:129946647 chr7:129946646 nonsynonymous SNV 0.992 0 20 hm7G_associated_SNPs_37389 0 0 0 0 2 CPA4 chr7:129946737 5'GT 129946737 Upstream 92bp 34414 chr15 41861141 41861141 1 + C T SKCM 41861142 + 41861122 41861162 41 ATCCCCAAAAGGACCTGATCGTACGTGTGTGCGTCTCCAAT ATCCCCAAAAGGACCTGATTGTACGTGTGTGCGTCTCCAAT < 41bp 0.519909495746801 0.72121665896734 NA NA prediction 0.40261432644108 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41861142 chr15:41861141 synonymous SNV . 0 20 hm7G_associated_SNPs_37390 0 0 1 0 2 TYRO3 chr15:41861076 3'AG 41861076 Downstream 66bp 34415 chr15 41861141 41861141 1 + C T SKCM 41861142 + 41861122 41861162 41 ATCCCCAAAAGGACCTGATCGTACGTGTGTGCGTCTCCAAT ATCCCCAAAAGGACCTGATTGTACGTGTGTGCGTCTCCAAT < 41bp 0.519909495746801 0.72121665896734 NA NA prediction 0.40261432644108 Functional Gain - TYRO3 ENSG00000092445 CDS Human protein_coding chr15:41861142 chr15:41861141 synonymous SNV . 0 20 hm7G_associated_SNPs_37390 0 0 1 0 2 TYRO3 chr15:41861220 5'GT 41861220 Upstream 80bp 34416 chr7 150739142 150739142 1 + C T UCEC 150739143 + 150739123 150739163 41 TACACAGCCGCCCGGGAAGCGAATGCTCACGAGTTCATCAC TACACAGCCGCCCGGGAAGTGAATGCTCACGAGTTCATCAC < 41bp 0.551075974724971 0.752381199227818 NA NA prediction 0.402610449005693 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150739143 chr7:150739142 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_37391 0 0 0 0 1 ABCB8 chr7:150739048 3'AG 150739048 Downstream 95bp 34417 chr17 6927489 6927489 1 + C T STAD 6927490 + 6927470 6927510 41 GTCCCGAAGCGAGAGGCTTCGCCCCTCTATTGGACTTCATG GTCCCGAAGCGAGAGGCTTTGCCCCTCTATTGGACTTCATG < 41bp 0.489424431380861 0.701305201987012 NA NA prediction 0.402610403974024 Functional Gain - BCL6B ENSG00000161940 CDS Human protein_coding chr17:6927490 chr17:6927489 synonymous SNV . 0 20 hm7G_associated_SNPs_37392 0 0 0 0 1 BCL6B chr17:6927402 3'AG 6927402 Downstream 88bp 34418 chr8 2037968 2037968 1 + C T UCEC 2037969 + 2037949 2037989 41 CAAACCGGCATGGCCTGAGCGAACCTTCGGAGATAACGTCC CAAACCGGCATGGCCTGAGTGAACCTTCGGAGATAACGTCC < 41bp 0.544775353545853 0.746080056237407 NA NA prediction 0.402609405383108 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2037969 chr8:2037968 synonymous SNV . 0 20 hm7G_associated_SNPs_37393 0 0 0 0 1 MYOM2 chr8:2038014 5'GT 2038014 Upstream 47bp 34419 chr17 77710893 77710893 1 + G A OV 77710894 + 77710874 77710914 41 GCTTTGACAACAAGGACATGGACATGAAGACCATCTTCCGC GCTTTGACAACAAGGACATAGACATGAAGACCATCTTCCGC < 41bp 0.529003645075545 0.730306311457628 NA NA prediction 0.402605332764166 Functional Gain - ENPP7 ENSG00000182156 CDS Human protein_coding chr17:77710894 chr17:77710893 nonsynonymous SNV 0.469 1 20 hm7G_associated_SNPs_37397 0 0 0 0 1 ENPP7 chr17:77710840 3'AG 77710840 Downstream 54bp 34420 chr2 29225539 29225539 1 + G A CESC 29225540 + 29225520 29225560 41 TACCACCCCTGAGGCCAGCGGAGTCAAAGAGAAGGGCCTGG TACCACCCCTGAGGCCAGCAGAGTCAAAGAGAAGGGCCTGG < 41bp 0.555992926192362 0.757295327150685 NA NA prediction 0.402604801916646 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29225540 chr2:29225539 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_37398 0 0 0 0 1 TOGARAM2 chr2:29225613 5'GT 29225613 Upstream 75bp 34421 chr2 231134555 231134555 1 + C T LUAD 231134556 + 231134536 231134576 41 CACAATTTTGGCCCAGGAGCGGAGCAATCAGCATATGAAAA CACAATTTTGGCCCAGGAGTGGAGCAATCAGCATATGAAAA < 41bp 0.531100049418911 0.732401089470326 NA NA prediction 0.40260208010283 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231134556 chr2:231134555 nonsynonymous SNV 0.609 0 20 hm7G_associated_SNPs_37400 0 0 0 0 1 SP140 chr2:231134552 3'AG 231134552 Downstream 4bp 34422 chr15 67477076 67477076 1 + C T UCEC 67477077 + 67477057 67477097 41 CTCTGTAGGAAGAGGCGTGCGGCTCTACTACATCGGAGGGG CTCTGTAGGAAGAGGCGTGTGGCTCTACTACATCGGAGGGG < 41bp 0.571646853286478 0.77294784422032 NA NA prediction 0.402601981867683 Functional Gain - SMAD3 ENSG00000166949 CDS Human protein_coding chr15:67477077 chr15:67477076 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_37401 0 0 1 0 1 SMAD3 chr15:67477065 3'AG 67477065 Downstream 12bp 34423 chr11 10514973 10514973 1 + G A rs139737164 10514974 + 10514954 10514994 41 TCAAGCACACATACCAGACGGAGCCTGACAGGACTGTGGCA TCAAGCACACATACCAGACAGAGCCTGACAGGACTGTGGCA < 41bp 0.508222380502092 0.70952320900789 NA NA prediction 0.402601657011595 Functional Gain - AMPD3 ENSG00000133805 CDS Human protein_coding chr11:10514974 chr11:10514973 synonymous SNV . 0 20 hm7G_associated_SNPs_37402 0 0 0 0 1 AMPD3 chr11:10514896 3'AG 10514896 Downstream 78bp 34424 chr17 7847811 7847811 1 + C T HNSC 7847812 + 7847792 7847832 41 AGACTGGCCCGGGAGCAAGCGCGAGTGTGCGAACTGCAGAG AGACTGGCCCGGGAGCAAGTGCGAGTGTGCGAACTGCAGAG < 41bp 0.548092288584383 0.749391269190259 NA NA prediction 0.402597961211753 Functional Gain - CNTROB ENSG00000170037 CDS Human protein_coding chr17:7847812 chr17:7847811 nonsynonymous SNV 0.865 4 20 hm7G_associated_SNPs_37404 0 0 1 0 1 CNTROB chr17:7847794 3'AG 7847794 Downstream 18bp 34425 chr3 11078599 11078599 1 + G A SKCM 11078600 + 11078580 11078620 41 CATCGTTCGCCCAGAGAATGGTCCTGAGCAGCCCCAGGCGG CATCGTTCGCCCAGAGAATAGTCCTGAGCAGCCCCAGGCGG < 41bp 0.512717928229141 0.714015923244425 NA NA prediction 0.402595990030569 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11078600 chr3:11078599 nonsynonymous SNV 0.863 1 20 hm7G_associated_SNPs_37405 0 0 1 0 1 SLC6A1 chr3:11078548 3'AG 11078548 Downstream 52bp 34426 chr1 92430257 92430257 1 + C T LUAD 92430258 + 92430238 92430278 41 TTGGAGAATAAATATTATGCGAAGGCTTCAGAATGTATAGA TTGGAGAATAAATATTATGTGAAGGCTTCAGAATGTATAGA < 41bp 0.498480689924868 0.701297821629462 NA NA prediction 0.402595643258924 Functional Gain - BRDT ENSG00000137948 CDS Human protein_coding chr1:92430258 chr1:92430257 nonsynonymous SNV 0.744 0 20 hm7G_associated_SNPs_37406 0 0 0 0 2 BRDT chr1:92430184 3'AG 92430184 Downstream 74bp 34427 chr1 92430257 92430257 1 + C T LUAD 92430258 + 92430238 92430278 41 TTGGAGAATAAATATTATGCGAAGGCTTCAGAATGTATAGA TTGGAGAATAAATATTATGTGAAGGCTTCAGAATGTATAGA < 41bp 0.498480689924868 0.701297821629462 NA NA prediction 0.402595643258924 Functional Gain - BRDT ENSG00000137948 CDS Human protein_coding chr1:92430258 chr1:92430257 nonsynonymous SNV 0.744 0 20 hm7G_associated_SNPs_37406 0 0 0 0 2 BRDT chr1:92430321 5'GT 92430321 Upstream 65bp 34428 chr1 156843450 156843450 1 + G A COAD 156843451 + 156843431 156843471 41 CCAGTGTGCAGCTGCACACGGCGGTGGAGATGCACCACTGG CCAGTGTGCAGCTGCACACAGCGGTGGAGATGCACCACTGG < 41bp 0.602438517862223 0.80373567489509 NA NA prediction 0.402594314065734 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156843451 chr1:156843450 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_37407 0 0 0 0 1 NTRK1 chr1:156843425 3'AG 156843425 Downstream 26bp 34429 chr3 133476778 133476778 1 + C T rs143019827 133476779 + 133476759 133476799 41 CACTGCCATCCGGAATCTACGGGAAGGCACATGTGAGTACC CACTGCCATCCGGAATCTATGGGAAGGCACATGTGAGTACC < 41bp 0.496368474019355 0.701295830593997 NA NA prediction 0.402591661187994 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133476779 chr3:133476778 nonsynonymous SNV 0.271 3 20 hm7G_associated_SNPs_37408 0 0 1 0 1 TF chr3:133476790 5'GT 133476790 Upstream 13bp 34430 chr6 4892030 4892030 1 + C T UCEC 4892031 + 4892011 4892051 41 AAGGCTATGACAGCGAGGACGACACTTGGGAGCCGGAACAG AAGGCTATGACAGCGAGGATGACACTTGGGAGCCGGAACAG < 41bp 0.514861184173329 0.716156525083695 NA NA prediction 0.402590681820731 Functional Gain - CDYL ENSG00000153046 CDS Human protein_coding chr6:4892031 chr6:4892030 synonymous SNV . 0 20 hm7G_associated_SNPs_37409 0 0 1 0 1 CDYL chr6:4891947 3'AG 4891947 Downstream 84bp 34431 chr2 228175518 228175518 1 + C T UCEC 228175519 + 228175499 228175539 41 GTGCAGGTTCTGAGGGCACCGGGCAAGCACTGGCCTCCCCT GTGCAGGTTCTGAGGGCACTGGGCAAGCACTGGCCTCCCCT < 41bp 0.532815336822451 0.734109157077193 NA NA prediction 0.402587640509483 Functional Gain - COL4A3 ENSG00000169031 CDS Human protein_coding chr2:228175519 chr2:228175518 synonymous SNV . 0 20 hm7G_associated_SNPs_37410 0 0 0 0 1 COL4A3 chr2:228175492 3'AG 228175492 Downstream 27bp 34432 chr7 44747515 44747515 1 + G A COAD 44747516 + 44747496 44747536 41 AGCGGCTGCTCCAGCCACCGGCAACAAGAAGACCCACCTGA AGCGGCTGCTCCAGCCACCAGCAACAAGAAGACCCACCTGA < 41bp 0.555374773885449 0.756667936950489 NA NA prediction 0.402586326130082 Functional Gain - OGDH ENSG00000105953 CDS Human protein_coding chr7:44747516 chr7:44747515 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_37411 0 0 1 0 1 OGDH chr7:44747478 3'AG 44747478 Downstream 38bp 34433 chr8 22475867 22475867 1 + G T UCEC 22475868 + 22475848 22475888 41 TGTTTTCTTTGCAGCCCAAGGAGCTGGATCCCTCTGCTGTG TGTTTTCTTTGCAGCCCAATGAGCTGGATCCCTCTGCTGTG < 41bp 0.356080553447972 0.701291414010929 NA NA prediction 0.402582828021857 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22475868 chr8:22475867 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_37413 0 0 1 0 1 CCAR2 chr8:22475862 3'AG 22475862 Downstream 6bp 34434 chr1 45266782 45266782 1 + C T UCEC 45266783 + 45266763 45266803 41 TTTCGCACCACTTTGAGGACGCTGACAACATCTACATTTTC TTTCGCACCACTTTGAGGATGCTGACAACATCTACATTTTC < 41bp 0.535950216329122 0.737240219204326 NA NA prediction 0.402580005750407 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45266783 chr1:45266782 synonymous SNV . 0 20 hm7G_associated_SNPs_37414 0 0 1 0 2 PLK3 chr1:45266708 3'AG 45266708 Downstream 75bp 34435 chr1 45266782 45266782 1 + C T UCEC 45266783 + 45266763 45266803 41 TTTCGCACCACTTTGAGGACGCTGACAACATCTACATTTTC TTTCGCACCACTTTGAGGATGCTGACAACATCTACATTTTC < 41bp 0.535950216329122 0.737240219204326 NA NA prediction 0.402580005750407 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45266783 chr1:45266782 synonymous SNV . 0 20 hm7G_associated_SNPs_37414 0 0 1 0 2 PLK3 chr1:45266824 5'GT 45266824 Upstream 43bp 34436 chr4 56230311 56230311 1 + C T CESC 56230312 + 56230292 56230332 41 ACAGCTTACGAAGACTCTTCGAGTGCCTCTACGTCAGTGTC ACAGCTTACGAAGACTCTTTGAGTGCCTCTACGTCAGTGTC < 41bp 0.542273036604497 0.743561659185274 NA NA prediction 0.402577245161555 Functional Gain - SRD5A3 ENSG00000128039 CDS Human protein_coding chr4:56230312 chr4:56230311 synonymous SNV . 0 20 hm7G_associated_SNPs_37416 0 0 1 0 1 SRD5A3 chr4:56230241 3'AG 56230241 Downstream 71bp 34437 chr8 42129644 42129644 1 + C T UCEC 42129645 + 42129625 42129665 41 TGGTCACCTTCCCTGACAACGCAGACATGTGGGGCCTGGGA TGGTCACCTTCCCTGACAATGCAGACATGTGGGGCCTGGGA < 41bp 0.497057822864967 0.701288312497201 NA NA prediction 0.402576624994403 Functional Gain - IKBKB ENSG00000104365 CDS Human protein_coding chr8:42129645 chr8:42129644 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_37417 0 0 1 0 1 IKBKB chr8:42129723 5'GT 42129723 Upstream 80bp 34438 chr12 101764871 101764871 1 + C T READ 101764872 + 101764852 101764892 41 AGCTGTTGGTCCCAGAAATCGATGAGGTCATGCGGAAAGTA AGCTGTTGGTCCCAGAAATTGATGAGGTCATGCGGAAAGTA < 41bp 0.510871119319447 0.71215703674357 NA NA prediction 0.402571834848245 Functional Gain - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101764872 chr12:101764871 synonymous SNV . 0 20 hm7G_associated_SNPs_37418 0 0 1 0 2 UTP20 chr12:101764836 3'AG 101764836 Downstream 36bp 34439 chr12 101764871 101764871 1 + C T READ 101764872 + 101764852 101764892 41 AGCTGTTGGTCCCAGAAATCGATGAGGTCATGCGGAAAGTA AGCTGTTGGTCCCAGAAATTGATGAGGTCATGCGGAAAGTA < 41bp 0.510871119319447 0.71215703674357 NA NA prediction 0.402571834848245 Functional Gain - UTP20 ENSG00000120800 CDS Human protein_coding chr12:101764872 chr12:101764871 synonymous SNV . 0 20 hm7G_associated_SNPs_37418 0 0 1 0 2 UTP20 chr12:101764946 5'GT 101764946 Upstream 76bp 34440 chr7 100160224 100160224 1 + G A CESC 100160225 + 100160205 100160245 41 CCCGTGTTGTAGCCTCTTCGGGATGGCTGGCCAGGTCCCCC CCCGTGTTGTAGCCTCTTCAGGATGGCTGGCCAGGTCCCCC < 41bp 0.573122053209467 0.774406272989763 NA NA prediction 0.402568439560592 Functional Gain - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100160225 chr7:100160224 nonsynonymous SNV 0.044 3 20 hm7G_associated_SNPs_37419 0 0 1 0 2 AGFG2 chr7:100160217 3'AG 100160217 Downstream 8bp 34441 chr7 100160224 100160224 1 + G A CESC 100160225 + 100160205 100160245 41 CCCGTGTTGTAGCCTCTTCGGGATGGCTGGCCAGGTCCCCC CCCGTGTTGTAGCCTCTTCAGGATGGCTGGCCAGGTCCCCC < 41bp 0.573122053209467 0.774406272989763 NA NA prediction 0.402568439560592 Functional Gain - AGFG2 ENSG00000106351 CDS Human protein_coding chr7:100160225 chr7:100160224 nonsynonymous SNV 0.044 3 20 hm7G_associated_SNPs_37419 0 0 1 0 2 AGFG2 chr7:100160305 5'GT 100160305 Upstream 82bp 34442 chr1 158151449 158151449 1 + G A UCEC 158151450 + 158151430 158151470 41 ACGCTGCAGCATATATTTCGGGTTTATCGAAGCAGCTTCAC ACGCTGCAGCATATATTTCAGGTTTATCGAAGCAGCTTCAC < 41bp 0.551501195099968 0.752785260258431 NA NA prediction 0.402568130316927 Functional Gain - CD1D ENSG00000158473 CDS Human protein_coding chr1:158151450 chr1:158151449 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_37420 0 0 0 0 1 CD1D chr1:158151511 5'GT 158151511 Upstream 63bp 34443 chr1 228362690 228362690 1 + C T COAD 228362691 + 228362671 228362711 41 TGGTGCCCGGGGGCCGGCTCGGGGACTTGTGGGATTATCAC TGGTGCCCGGGGGCCGGCTTGGGGACTTGTGGGATTATCAC < 41bp 0.502987916982127 0.704268796964185 NA NA prediction 0.402561759964116 Functional Gain - IBA57 ENSG00000181873 CDS Human protein_coding chr1:228362691 chr1:228362690 synonymous SNV . 0 20 hm7G_associated_SNPs_37424 0 0 1 0 1 IBA57 chr1:228362730 5'GT 228362730 Upstream 41bp 34444 chr20 30738612 30738612 1 + C T CESC 30738613 + 30738593 30738633 41 TTTCCCACAGGGTGTTTGGCGGATTTTCTGCTGGCCGTCTG TTTCCCACAGGGTGTTTGGTGGATTTTCTGCTGGCCGTCTG < 41bp 0.564516005416097 0.765796206763655 NA NA prediction 0.402560402695117 Functional Gain - TM9SF4 ENSG00000101337 CDS Human protein_coding chr20:30738613 chr20:30738612 synonymous SNV . 0 20 hm7G_associated_SNPs_37425 0 0 1 0 1 TM9SF4 chr20:30738678 5'GT 30738678 Upstream 67bp 34445 chr15 100250855 100250855 1 + C T OV 100250856 + 100250836 100250876 41 TAGATTATTCACTGACCAGCGCTGACCTGTCAGCCCTTCAA TAGATTATTCACTGACCAGTGCTGACCTGTCAGCCCTTCAA < 41bp 0.536331260387842 0.737610087248255 NA NA prediction 0.402557653720826 Functional Gain - MEF2A ENSG00000068305 CDS Human protein_coding chr15:100250856 chr15:100250855 synonymous SNV . 0 20 hm7G_associated_SNPs_37426 0 0 1 0 1 MEF2A chr15:100250839 3'AG 100250839 Downstream 17bp 34446 chr2 27305826 27305826 1 + C T UCEC 27305827 + 27305807 27305847 41 GAGCGGGGAGCTGGGGGGGCGGTTGGATCTGTTGGAGGAGC GAGCGGGGAGCTGGGGGGGTGGTTGGATCTGTTGGAGGAGC < 41bp 0.490091494801976 0.701277885192329 NA NA prediction 0.402555770384659 Functional Gain - EMILIN1 ENSG00000138080 CDS Human protein_coding chr2:27305827 chr2:27305826 nonsynonymous SNV 0.656 2 20 hm7G_associated_SNPs_37428 0 0 1 0 1 EMILIN1 chr2:27305849 5'GT 27305849 Upstream 24bp 34447 chr7 129919385 129919385 1 + G T PRAD 129919386 + 129919366 129919406 41 TTGAAGTGAAATCCATAGTGGACTTCATCAAGAGTCATGGA TTGAAGTGAAATCCATAGTTGACTTCATCAAGAGTCATGGA < 41bp 0.709468224738278 0.910745872487563 NA NA prediction 0.402555295498569 Functional Gain - CPA2 ENSG00000158516 CDS Human protein_coding chr7:129919386 chr7:129919385 synonymous SNV . 0 20 hm7G_associated_SNPs_37429 0 0 0 0 1 CPA2 chr7:129919303 3'AG 129919303 Downstream 83bp 34448 chr20 376857 376857 1 + G A rs11537605 376858 + 376838 376878 41 CCAGGAAGAAGCTGGTGCTGGAGAACCTGGAGGACTCCTGC CCAGGAAGAAGCTGGTGCTAGAGAACCTGGAGGACTCCTGC < 41bp 0.527492551937451 0.728768845463705 NA NA prediction 0.402552587052508 Functional Gain - TRIB3 ENSG00000101255 CDS Human protein_coding chr20:376858 chr20:376857 synonymous SNV . 0 20 hm7G_associated_SNPs_37430 0 0 1 0 1 TRIB3 chr20:376842 3'AG 376842 Downstream 16bp 34449 chr4 15034787 15034787 1 + C T COAD 15034788 + 15034768 15034808 41 TTCCTGTCTTTTTAAAGGTCGATTGAGCTATCCACATCCAG TTCCTGTCTTTTTAAAGGTTGATTGAGCTATCCACATCCAG < 41bp 0.489923248186425 0.701275686550896 NA NA prediction 0.402551373101791 Functional Gain - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15034788 chr4:15034787 stopgain 1.000 1 20 hm7G_associated_SNPs_37431 0 0 0 0 2 CPEB2 chr4:15034785 3'AG 15034785 Downstream 3bp 34450 chr4 15034787 15034787 1 + C T COAD 15034788 + 15034768 15034808 41 TTCCTGTCTTTTTAAAGGTCGATTGAGCTATCCACATCCAG TTCCTGTCTTTTTAAAGGTTGATTGAGCTATCCACATCCAG < 41bp 0.489923248186425 0.701275686550896 NA NA prediction 0.402551373101791 Functional Gain - CPEB2 ENSG00000137449 CDS Human protein_coding chr4:15034788 chr4:15034787 stopgain 1.000 1 20 hm7G_associated_SNPs_37431 0 0 0 0 2 CPEB2 chr4:15034835 5'GT 15034835 Upstream 49bp 34451 chr3 40457387 40457387 1 + G A SKCM 40457388 + 40457368 40457408 41 TGGAAACCACGGGTGCCCTGGACTTAGGTGGTGCCTCCACC TGGAAACCACGGGTGCCCTAGACTTAGGTGGTGCCTCCACC < 41bp 0.543068907075123 0.744343805762381 NA NA prediction 0.402549797374517 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40457388 chr3:40457387 synonymous SNV . 0 20 hm7G_associated_SNPs_37432 0 0 0 0 1 ENTPD3 chr3:40457331 3'AG 40457331 Downstream 57bp 34452 chr12 50492783 50492783 1 + G A SKCM 50492784 + 50492764 50492804 41 TGGGAATCCGGAATACATAGGGCCTCTCCCACAGCCCTGAT TGGGAATCCGGAATACATAAGGCCTCTCCCACAGCCCTGAT < 41bp 0.491717816592553 0.70127393422943 NA NA prediction 0.402547868458859 Functional Gain - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50492784 chr12:50492783 synonymous SNV . 0 20 hm7G_associated_SNPs_37434 0 0 1 0 1 SMARCD1 chr12:50492730 3'AG 50492730 Downstream 54bp 34453 chr8 26441409 26441409 1 + C T CESC 26441410 + 26441390 26441430 41 AGGAATTGACGTCCACACTCGTTTCCAGATGCCTGATCAGG AGGAATTGACGTCCACACTTGTTTCCAGATGCCTGATCAGG < 41bp 0.543822743487754 0.745096644901841 NA NA prediction 0.402547802828175 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441410 chr8:26441409 nonsynonymous SNV 0.690 2 20 hm7G_associated_SNPs_37435 0 0 1 0 2 DPYSL2 chr8:26441315 3'AG 26441315 Downstream 95bp 34454 chr8 26441409 26441409 1 + C T CESC 26441410 + 26441390 26441430 41 AGGAATTGACGTCCACACTCGTTTCCAGATGCCTGATCAGG AGGAATTGACGTCCACACTTGTTTCCAGATGCCTGATCAGG < 41bp 0.543822743487754 0.745096644901841 NA NA prediction 0.402547802828175 Functional Gain - DPYSL2 ENSG00000092964 CDS Human protein_coding chr8:26441410 chr8:26441409 nonsynonymous SNV 0.690 2 20 hm7G_associated_SNPs_37435 0 0 1 0 2 DPYSL2 chr8:26441499 5'GT 26441499 Upstream 91bp 34455 chr3 32495810 32495810 1 + G A rs146432122 32495811 + 32495791 32495831 41 GGACGTGTACTCCAGGCGAGGCCTCTGGACCTGTGTTCCTG GGACGTGTACTCCAGGCGAAGCCTCTGGACCTGTGTTCCTG < 41bp 0.469683622013778 0.701273436062349 NA NA prediction 0.402546872124698 Functional Gain - CMTM7 ENSG00000153551 CDS Human protein_coding chr3:32495811 chr3:32495810 synonymous SNV . 0 20 hm7G_associated_SNPs_37436 0 0 1 0 1 CMTM7 chr3:32495733 3'AG 32495733 Downstream 78bp 34456 chr17 78039399 78039399 1 + C T UCEC 78039400 + 78039380 78039420 41 CACAGGGCGGTGCTGGAGGCGCTCAGGTACTGCAGGGCCAC CACAGGGCGGTGCTGGAGGTGCTCAGGTACTGCAGGGCCAC < 41bp 0.522929488168761 0.724201665290108 NA NA prediction 0.402544354242694 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78039400 chr17:78039399 nonsynonymous SNV 0.600 1 20 hm7G_associated_SNPs_37437 0 0 0 0 1 CCDC40 chr17:78039405 5'GT 78039405 Upstream 7bp 34457 chr14 93398731 93398731 1 + G A SKCM 93398732 + 93398712 93398752 41 CAGGTCGGTCGGAGGCTCTGGCTGTGGATGGAGCTGGGAAG CAGGTCGGTCGGAGGCTCTAGCTGTGGATGGAGCTGGGAAG < 41bp 0.594007316458514 0.795278000824572 NA NA prediction 0.402541368732116 Functional Gain - CHGA ENSG00000100604 CDS Human protein_coding chr14:93398732 chr14:93398731 synonymous SNV . 0 20 hm7G_associated_SNPs_37439 0 0 0 0 1 CHGA chr14:93398715 3'AG 93398715 Downstream 17bp 34458 chr9 101767302 101767302 1 + C T SKCM 101767303 + 101767283 101767323 41 AGCTGGACCTCTCCATGTCCGCCCAGAGCCTCGGGGAAGAG AGCTGGACCTCTCCATGTCTGCCCAGAGCCTCGGGGAAGAG < 41bp 0.518818669689122 0.72008864902696 NA NA prediction 0.402539958675675 Functional Gain - COL15A1 ENSG00000204291 CDS Human protein_coding chr9:101767303 chr9:101767302 synonymous SNV . 0 20 hm7G_associated_SNPs_37440 0 0 0 0 1 COL15A1 chr9:101767332 5'GT 101767332 Upstream 31bp 34459 chr12 8205425 8205425 1 + C T COAD 8205426 + 8205406 8205446 41 AGGAGATCCCTGATGACTTCGACTGGGACTTGATCACTTAG AGGAGATCCCTGATGACTTTGACTGGGACTTGATCACTTAG < 41bp 0.519518458202968 0.720787367744073 NA NA prediction 0.402537819082211 Functional Gain - FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8205426 chr12:8205425 synonymous SNV . 0 20 hm7G_associated_SNPs_37441 0 0 1 0 1 FOXJ2 chr12:8205358 3'AG 8205358 Downstream 68bp 34460 chr19 2098103 2098103 1 + C T UCEC 2098104 + 2098084 2098124 41 ACTGCACAGACTCGCACGTCGCCTGCTTTGGCTATAACTGC ACTGCACAGACTCGCACGTTGCCTGCTTTGGCTATAACTGC < 41bp 0.533066404096257 0.734334585444143 NA NA prediction 0.402536362695772 Functional Gain - IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2098104 chr19:2098103 synonymous SNV . 0 20 hm7G_associated_SNPs_37443 0 0 1 0 2 IZUMO4 chr19:2098051 3'AG 2098051 Downstream 53bp 34461 chr19 2098103 2098103 1 + C T UCEC 2098104 + 2098084 2098124 41 ACTGCACAGACTCGCACGTCGCCTGCTTTGGCTATAACTGC ACTGCACAGACTCGCACGTTGCCTGCTTTGGCTATAACTGC < 41bp 0.533066404096257 0.734334585444143 NA NA prediction 0.402536362695772 Functional Gain - IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2098104 chr19:2098103 synonymous SNV . 0 20 hm7G_associated_SNPs_37443 0 0 1 0 2 IZUMO4 chr19:2098126 5'GT 2098126 Upstream 24bp 34462 chr11 119145619 119145619 1 + C T STAD 119145620 + 119145600 119145640 41 TGGCTTTTTTGACGTATGACGAAGTGAAAGCTCGGCTCCAG TGGCTTTTTTGACGTATGATGAAGTGAAAGCTCGGCTCCAG < 41bp 0.556739310839011 0.758006670045433 NA NA prediction 0.402534718412844 Functional Gain - CBL ENSG00000110395 CDS Human protein_coding chr11:119145620 chr11:119145619 synonymous SNV . 0 20 hm7G_associated_SNPs_37444 0 0 1 0 2 CBL chr11:119145542 3'AG 119145542 Downstream 78bp 34463 chr11 119145619 119145619 1 + C T STAD 119145620 + 119145600 119145640 41 TGGCTTTTTTGACGTATGACGAAGTGAAAGCTCGGCTCCAG TGGCTTTTTTGACGTATGATGAAGTGAAAGCTCGGCTCCAG < 41bp 0.556739310839011 0.758006670045433 NA NA prediction 0.402534718412844 Functional Gain - CBL ENSG00000110395 CDS Human protein_coding chr11:119145620 chr11:119145619 synonymous SNV . 0 20 hm7G_associated_SNPs_37444 0 0 1 0 2 CBL chr11:119145663 5'GT 119145663 Upstream 45bp 34464 chr5 112926876 112926876 1 + C T COAD 112926877 + 112926857 112926897 41 TAATGAACGGAAGCTAAATCGAGCCTTTTGGGAAAGCAGCA TAATGAACGGAAGCTAAATTGAGCCTTTTGGGAAAGCAGCA < 41bp 0.52149949716005 0.722766014963129 NA NA prediction 0.402533035606158 Functional Gain - YTHDC2 ENSG00000047188 CDS Human protein_coding chr5:112926877 chr5:112926876 stopgain 0.998 1 20 hm7G_associated_SNPs_37445 0 0 1 0 1 YTHDC2 chr5:112926941 5'GT 112926941 Upstream 66bp 34465 chr2 37035699 37035699 1 + C T UCEC 37035700 + 37035680 37035720 41 CCTGCAGCCTCTGGTGAAGCGGGTCTGCGACACTGACCGCC CCTGCAGCCTCTGGTGAAGTGGGTCTGCGACACTGACCGCC < 41bp 0.5312028189804 0.732468819184203 NA NA prediction 0.402532000407607 Functional Gain - VIT ENSG00000205221 CDS Human protein_coding chr2:37035700 chr2:37035699 nonsynonymous SNV 0.973 3 20 hm7G_associated_SNPs_37446 0 0 0 0 1 VIT chr2:37035615 3'AG 37035615 Downstream 85bp 34466 chr17 78023868 78023868 1 + G T LUSC 78023869 + 78023849 78023889 41 TCTCTTTGGTCCAGGTTGTGGCTACCAAGCAGAGCCGAGCC TCTCTTTGGTCCAGGTTGTTGCTACCAAGCAGAGCCGAGCC < 41bp 0.716120548159136 0.917385972812099 NA NA prediction 0.402530849305926 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78023869 chr17:78023868 synonymous SNV . 0 20 hm7G_associated_SNPs_37448 0 0 1 0 1 CCDC40 chr17:78023863 3'AG 78023863 Downstream 6bp 34467 chr6 138726347 138726347 1 + G A ACC 138726348 + 138726328 138726368 41 GCACGTCCGTGGAGTCTATGGACTGGGATTCAGCCATCCAG GCACGTCCGTGGAGTCTATAGACTGGGATTCAGCCATCCAG < 41bp 0.536410771958489 0.737676053128518 NA NA prediction 0.40253056234006 Functional Gain - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138726348 chr6:138726347 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_37449 0 0 1 0 2 HEBP2 chr6:138726282 3'AG 138726282 Downstream 66bp 34468 chr6 138726347 138726347 1 + G A ACC 138726348 + 138726328 138726368 41 GCACGTCCGTGGAGTCTATGGACTGGGATTCAGCCATCCAG GCACGTCCGTGGAGTCTATAGACTGGGATTCAGCCATCCAG < 41bp 0.536410771958489 0.737676053128518 NA NA prediction 0.40253056234006 Functional Gain - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138726348 chr6:138726347 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_37449 0 0 1 0 2 HEBP2 chr6:138726417 5'GT 138726417 Upstream 71bp 34469 chr17 74922712 74922712 1 + G A LUAD 74922713 + 74922693 74922733 41 TCATCGACACCTTCGGGACGGAACCTGCGTACAACCACGAG TCATCGACACCTTCGGGACAGAACCTGCGTACAACCACGAG < 41bp 0.530785465368553 0.73204550881648 NA NA prediction 0.402520086895854 Functional Gain - MGAT5B ENSG00000167889 CDS Human protein_coding chr17:74922713 chr17:74922712 synonymous SNV . 0 20 hm7G_associated_SNPs_37450 0 0 0 0 1 MGAT5B chr17:74922679 3'AG 74922679 Downstream 34bp 34470 chr3 149375012 149375012 1 + G A THYM 149375013 + 149374993 149375033 41 GAGTTGAAGAGGGCTTCGAGGTCTGTGTCTAGGTCCTGCGT GAGTTGAAGAGGGCTTCGAAGTCTGTGTCTAGGTCCTGCGT < 41bp 0.514844342412695 0.716102318966662 NA NA prediction 0.402515953107935 Functional Gain - WWTR1 ENSG00000018408 CDS Human antisense chr3:149375013 chr3:149375012 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37452 0 0 0 0 1 WWTR1 chr3:149375109 5'GT 149375109 Upstream 98bp 34471 chr11 124955002 124955002 1 + C T STAD 124955003 + 124954983 124955023 41 GCCTGGTCAATGGCCCATACGCGCTCATCACCACTGCTGTC GCCTGGTCAATGGCCCATATGCGCTCATCACCACTGCTGTC < 41bp 0.550045233742275 0.751302905130788 NA NA prediction 0.402515342777027 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955003 chr11:124955002 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_37453 0 0 0 0 2 SLC37A2 chr11:124954962 3'AG 124954962 Downstream 41bp 34472 chr11 124955002 124955002 1 + C T STAD 124955003 + 124954983 124955023 41 GCCTGGTCAATGGCCCATACGCGCTCATCACCACTGCTGTC GCCTGGTCAATGGCCCATATGCGCTCATCACCACTGCTGTC < 41bp 0.550045233742275 0.751302905130788 NA NA prediction 0.402515342777027 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124955003 chr11:124955002 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_37453 0 0 0 0 2 SLC37A2 chr11:124955035 5'GT 124955035 Upstream 34bp 34473 chr6 168276141 168276141 1 + G T ESCA 168276142 + 168276122 168276162 41 AATTGGAAAAGAGAATGCAGGAATTTCGGAGCTCAGATGGG AATTGGAAAAGAGAATGCATGAATTTCGGAGCTCAGATGGG < 41bp 0.362285419967264 0.70125739191203 NA NA prediction 0.402514783824059 Functional Gain - AFDN ENSG00000130396 CDS Human protein_coding chr6:168276142 chr6:168276141 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_37454 0 0 1 0 1 AFDN chr6:168276175 5'GT 168276175 Upstream 35bp 34474 chr6 35280081 35280081 1 + G A SKCM 35280082 + 35280062 35280102 41 TCCTTCTCCTGCTCCAGGTGGAATACCTGCTGAAAAAGGTA TCCTTCTCCTGCTCCAGGTAGAATACCTGCTGAAAAAGGTA < 41bp 0.543559923693432 0.744814045211772 NA NA prediction 0.40250824303668 Functional Gain - DEF6 ENSG00000023892 CDS Human protein_coding chr6:35280082 chr6:35280081 synonymous SNV . 0 20 hm7G_associated_SNPs_37456 0 0 0 0 1 DEF6 chr6:35280079 3'AG 35280079 Downstream 3bp 34475 chr17 75202379 75202379 1 + C T GBM 75202380 + 75202360 75202400 41 TGGAGACCTGGTGTGAAAGCGCTGCTGCGGATCATCGAGGT TGGAGACCTGGTGTGAAAGTGCTGCTGCGGATCATCGAGGT < 41bp 0.539941361339104 0.741192639260965 NA NA prediction 0.402502555843723 Functional Gain - SEC14L1 ENSG00000129657 CDS Human protein_coding chr17:75202380 chr17:75202379 nonsynonymous SNV 0.156 3 20 hm7G_associated_SNPs_37459 0 0 1 0 1 SEC14L1 chr17:75202311 3'AG 75202311 Downstream 69bp 34476 chr2 69040503 69040503 1 + C T rs74323133 69040504 + 69040484 69040524 41 TGGTTCCCTGGAGCCAGTACGAAGGGTTCCTGCTCTGTGGG TGGTTCCCTGGAGCCAGTATGAAGGGTTCCTGCTCTGTGGG < 41bp 0.485416208466662 0.701251272736799 NA NA prediction 0.402502545473598 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human other chr2:69040504 chr2:69040503 synonymous SNV . 0 20 hm7G_associated_SNPs_37460 0 0 0 1 3 ARHGAP25 chr2:69040419 3'AG 69040419 Downstream 85bp 34477 chr2 69040503 69040503 1 + C T rs74323133 69040504 + 69040484 69040524 41 TGGTTCCCTGGAGCCAGTACGAAGGGTTCCTGCTCTGTGGG TGGTTCCCTGGAGCCAGTATGAAGGGTTCCTGCTCTGTGGG < 41bp 0.485416208466662 0.701251272736799 NA NA prediction 0.402502545473598 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040504 chr2:69040503 synonymous SNV . 0 20 hm7G_associated_SNPs_37460 0 0 0 1 3 ARHGAP25 chr2:69040421 3'AG 69040421 Downstream 83bp 34478 chr2 69040503 69040503 1 + C T rs74323133 69040504 + 69040484 69040524 41 TGGTTCCCTGGAGCCAGTACGAAGGGTTCCTGCTCTGTGGG TGGTTCCCTGGAGCCAGTATGAAGGGTTCCTGCTCTGTGGG < 41bp 0.485416208466662 0.701251272736799 NA NA prediction 0.402502545473598 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69040504 chr2:69040503 synonymous SNV . 0 20 hm7G_associated_SNPs_37460 0 0 0 1 3 ARHGAP25 chr2:69040551 5'GT 69040551 Upstream 49bp 34479 chr6 42034064 42034064 1 + C T SKCM 42034065 + 42034045 42034085 41 CGTAGACGTACCGTGAGCCCGTGTCAGACTACCAGGTCCTG CGTAGACGTACCGTGAGCCTGTGTCAGACTACCAGGTCCTG < 41bp 0.519196129136855 0.720447339020517 NA NA prediction 0.402502419767325 Functional Gain - TAF8 ENSG00000137413 CDS Human protein_coding chr6:42034065 chr6:42034064 synonymous SNV . 0 20 hm7G_associated_SNPs_37461 0 0 1 0 1 TAF8 chr6:42034050 3'AG 42034050 Downstream 15bp 34480 chr1 1961050 1961050 1 + G A STAD 1961051 + 1961031 1961071 41 GCCCGCTCCTCCCTGCCACGGGCATCAGCCATCAAGGCACT GCCCGCTCCTCCCTGCCACAGGCATCAGCCATCAAGGCACT < 41bp 0.586685076736102 0.787935891540311 NA NA prediction 0.402501629608418 Functional Gain - GABRD ENSG00000187730 CDS Human protein_coding chr1:1961051 chr1:1961050 nonsynonymous SNV 0.179 5 20 hm7G_associated_SNPs_37462 0 0 0 0 1 GABRD chr1:1960990 3'AG 1960990 Downstream 61bp 34481 chr15 31115827 31115827 1 + G T LIHC 31115828 + 31115808 31115848 41 TAGTGGGGGCCCTGATGCCGGCCGCCATGATCGCCCCGGTG TAGTGGGGGCCCTGATGCCTGCCGCCATGATCGCCCCGGTG < 41bp 0.695110639102497 0.896360655741169 NA NA prediction 0.402500033277344 Functional Gain - HERC2P10 ENSG00000259845 ncRNA_exonic Human unprocessed_pseudogene chr15:31115828 chr15:31115827 . . 0 20 hm7G_associated_SNPs_37465 0 0 0 0 1 HERC2P10 chr15:31115800 3'AG 31115800 Downstream 28bp 34482 chr1 2430643 2430643 1 + C T BLCA 2430644 + 2430624 2430664 41 GACTTCATTGGCCAGAGGACGCTGGCCTTCAGCAGCATGAT GACTTCATTGGCCAGAGGATGCTGGCCTTCAGCAGCATGAT < 41bp 0.510540648399379 0.711790347091157 NA NA prediction 0.402499397383557 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2430644 chr1:2430643 nonsynonymous SNV 0.965 4 20 hm7G_associated_SNPs_37466 0 0 0 0 1 PLCH2 chr1:2430669 5'GT 2430669 Upstream 27bp 34483 chr1 156845893 156845893 1 + G A STAD 156845894 + 156845874 156845914 41 GTTCACCACATCAAGCGCCGGGACATCGTGCTCAAGTGGGA GTTCACCACATCAAGCGCCAGGACATCGTGCTCAAGTGGGA < 41bp 0.477826224578749 0.701249674138455 NA NA prediction 0.40249934827691 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845894 chr1:156845893 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_37467 0 0 0 0 2 NTRK1 chr1:156845863 3'AG 156845863 Downstream 31bp 34484 chr1 156845893 156845893 1 + G A STAD 156845894 + 156845874 156845914 41 GTTCACCACATCAAGCGCCGGGACATCGTGCTCAAGTGGGA GTTCACCACATCAAGCGCCAGGACATCGTGCTCAAGTGGGA < 41bp 0.477826224578749 0.701249674138455 NA NA prediction 0.40249934827691 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156845894 chr1:156845893 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_37467 0 0 0 0 2 NTRK1 chr1:156845872 3'AG 156845872 Downstream 22bp 34485 chr16 31539475 31539475 1 + G A SKCM 31539476 + 31539456 31539496 41 GGCAGATGGCTCTTCTTAAGGCCAATAAGGATCTCATTTCC GGCAGATGGCTCTTCTTAAAGCCAATAAGGATCTCATTTCC < 41bp 0.549233726264227 0.750482355556458 NA NA prediction 0.402497258584462 Functional Gain - AHSP ENSG00000169877 CDS Human protein_coding chr16:31539476 chr16:31539475 synonymous SNV . 0 20 hm7G_associated_SNPs_37468 0 0 0 0 2 AHSP chr16:31539457 3'AG 31539457 Downstream 19bp 34486 chr16 31539475 31539475 1 + G A SKCM 31539476 + 31539456 31539496 41 GGCAGATGGCTCTTCTTAAGGCCAATAAGGATCTCATTTCC GGCAGATGGCTCTTCTTAAAGCCAATAAGGATCTCATTTCC < 41bp 0.549233726264227 0.750482355556458 NA NA prediction 0.402497258584462 Functional Gain - AHSP ENSG00000169877 CDS Human protein_coding chr16:31539476 chr16:31539475 synonymous SNV . 0 20 hm7G_associated_SNPs_37468 0 0 0 0 2 AHSP chr16:31539535 5'GT 31539535 Upstream 61bp 34487 chr1 40434281 40434281 1 + C T COAD 40434282 + 40434262 40434302 41 TGGCTGCTCGCAGCCGGAACGTGTCAAGTTTACACTGAACA TGGCTGCTCGCAGCCGGAATGTGTCAAGTTTACACTGAACA < 41bp 0.519029676368839 0.720275906340414 NA NA prediction 0.402492459943151 Functional Gain - MFSD2A ENSG00000168389 CDS Human protein_coding chr1:40434282 chr1:40434281 nonsynonymous SNV 0.012 3 20 hm7G_associated_SNPs_37471 0 0 0 0 1 MFSD2A chr1:40434241 3'AG 40434241 Downstream 41bp 34488 chr5 134074471 134074471 1 + G A LUAD 134074472 + 134074452 134074492 41 ATGGGCTTTCACAGGCCCGGGAGCGGCGCGGGTAAGAGCCT ATGGGCTTTCACAGGCCCGAGAGCGGCGCGGGTAAGAGCCT < 41bp 0.512734210567124 0.713980255846731 NA NA prediction 0.402492090559214 Functional Gain - CAMLG ENSG00000164615 CDS Human protein_coding chr5:134074472 chr5:134074471 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_37472 0 0 1 0 1 CAMLG chr5:134074482 5'GT 134074482 Upstream 12bp 34489 chr22 29490381 29490381 1 + G A rs73390888 29490382 + 29490362 29490402 41 AAATACCCCAACGGGGAGGGGGGCCTGGGTGAGCACAACTA AAATACCCCAACGGGGAGGAGGGCCTGGGTGAGCACAACTA < 41bp 0.559864916910767 0.761108915677468 NA NA prediction 0.402487997533402 Functional Gain - KREMEN1 ENSG00000183762 CDS Human protein_coding chr22:29490382 chr22:29490381 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_37473 0 0 1 0 1 KREMEN1 chr22:29490408 5'GT 29490408 Upstream 28bp 34490 chr14 76211869 76211869 1 + C T COAD 76211870 + 76211850 76211890 41 GGTGAAGGAGGAGAATGATCGGCGAGGTGGATTTATTCGCA GGTGAAGGAGGAGAATGATTGGCGAGGTGGATTTATTCGCA < 41bp 0.517128448842936 0.718372045958532 NA NA prediction 0.402487194231192 Functional Gain - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76211870 chr14:76211869 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37474 0 0 1 0 2 TTLL5 chr14:76211833 3'AG 76211833 Downstream 37bp 34491 chr14 76211869 76211869 1 + C T COAD 76211870 + 76211850 76211890 41 GGTGAAGGAGGAGAATGATCGGCGAGGTGGATTTATTCGCA GGTGAAGGAGGAGAATGATTGGCGAGGTGGATTTATTCGCA < 41bp 0.517128448842936 0.718372045958532 NA NA prediction 0.402487194231192 Functional Gain - TTLL5 ENSG00000119685 CDS Human protein_coding chr14:76211870 chr14:76211869 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37474 0 0 1 0 2 TTLL5 chr14:76211924 5'GT 76211924 Upstream 56bp 34492 chr22 40800570 40800570 1 + C T LGG 40800571 + 40800551 40800591 41 CTTCCCTCAGCTGTGGATGCGGCTCTCTGGGGCCCTGCAGA CTTCCCTCAGCTGTGGATGTGGCTCTCTGGGGCCCTGCAGA < 41bp 0.550156743340356 0.751398851231792 NA NA prediction 0.402484215782871 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40800571 chr22:40800570 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_37476 0 0 1 0 2 SGSM3 chr22:40800561 3'AG 40800561 Downstream 10bp 34493 chr22 40800570 40800570 1 + C T LGG 40800571 + 40800551 40800591 41 CTTCCCTCAGCTGTGGATGCGGCTCTCTGGGGCCCTGCAGA CTTCCCTCAGCTGTGGATGTGGCTCTCTGGGGCCCTGCAGA < 41bp 0.550156743340356 0.751398851231792 NA NA prediction 0.402484215782871 Functional Gain - SGSM3 ENSG00000100359 CDS Human protein_coding chr22:40800571 chr22:40800570 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_37476 0 0 1 0 2 SGSM3 chr22:40800668 5'GT 40800668 Upstream 99bp 34494 chr17 25973578 25973578 1 + C T UCEC 25973579 + 25973559 25973599 41 TTTCTTTTCAACAGACTCCCGCCATCCCACCTATGATGTAC TTTCTTTTCAACAGACTCCTGCCATCCCACCTATGATGTAC < 41bp 0.52967678526671 0.730913249344702 NA NA prediction 0.402472928155983 Functional Gain - LGALS9 ENSG00000168961 CDS Human protein_coding chr17:25973579 chr17:25973578 synonymous SNV . 0 20 hm7G_associated_SNPs_37478 0 0 0 0 2 LGALS9 chr17:25973573 3'AG 25973573 Downstream 6bp 34495 chr17 25973578 25973578 1 + C T UCEC 25973579 + 25973559 25973599 41 TTTCTTTTCAACAGACTCCCGCCATCCCACCTATGATGTAC TTTCTTTTCAACAGACTCCTGCCATCCCACCTATGATGTAC < 41bp 0.52967678526671 0.730913249344702 NA NA prediction 0.402472928155983 Functional Gain - LGALS9 ENSG00000168961 CDS Human protein_coding chr17:25973579 chr17:25973578 synonymous SNV . 0 20 hm7G_associated_SNPs_37478 0 0 0 0 2 LGALS9 chr17:25973614 5'GT 25973614 Upstream 37bp 34496 chr5 76249440 76249440 1 + G A UCEC 76249441 + 76249421 76249461 41 GCCAGCTGAGGGAAGCGGCGGACTACGATCCTTTCCTGCTC GCCAGCTGAGGGAAGCGGCAGACTACGATCCTTTCCTGCTC < 41bp 0.520950046888624 0.722185221627481 NA NA prediction 0.402470349477714 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249441 chr5:76249440 synonymous SNV . 0 20 hm7G_associated_SNPs_37480 0 0 0 0 2 CRHBP chr5:76249426 3'AG 76249426 Downstream 15bp 34497 chr5 76249440 76249440 1 + G A UCEC 76249441 + 76249421 76249461 41 GCCAGCTGAGGGAAGCGGCGGACTACGATCCTTTCCTGCTC GCCAGCTGAGGGAAGCGGCAGACTACGATCCTTTCCTGCTC < 41bp 0.520950046888624 0.722185221627481 NA NA prediction 0.402470349477714 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76249441 chr5:76249440 synonymous SNV . 0 20 hm7G_associated_SNPs_37480 0 0 0 0 2 CRHBP chr5:76249519 5'GT 76249519 Upstream 80bp 34498 chr2 201507394 201507394 1 + G A HNSC 201507395 + 201507375 201507415 41 TTTCCCAATCTCCGCTGCCGGGGTTGGGCATGCAGAACCAA TTTCCCAATCTCCGCTGCCAGGGTTGGGCATGCAGAACCAA < 41bp 0.517525053398132 0.718760203848668 NA NA prediction 0.40247030090107 Functional Gain - AOX1 ENSG00000138356 CDS Human protein_coding chr2:201507395 chr2:201507394 nonsynonymous SNV 0.722 0 20 hm7G_associated_SNPs_37481 0 0 0 0 1 AOX1 chr2:201507333 3'AG 201507333 Downstream 62bp 34499 chr13 113744029 113744029 1 + C T UCEC 113744030 + 113744010 113744050 41 CGCCACTGACAAAGCCCCCCGAAAAGGGCAAAGGTGGGTAT CGCCACTGACAAAGCCCCCTGAAAAGGGCAAAGGTGGGTAT < 41bp 0.521323266885831 0.722557327264516 NA NA prediction 0.40246812075737 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113744030 chr13:113744029 synonymous SNV . 0 20 hm7G_associated_SNPs_37482 0 0 1 0 1 MCF2L chr13:113744042 5'GT 113744042 Upstream 14bp 34500 chr18 29041235 29041235 1 + C T COAD 29041236 + 29041216 29041256 41 TTTAAGTTCTGAATTACTTCGATTTCAAGTAACAGATTTGG TTTAAGTTCTGAATTACTTTGATTTCAAGTAACAGATTTGG < 41bp 0.510666060163829 0.711896577845988 NA NA prediction 0.402461035364319 Functional Gain - DSG3 ENSG00000134757 CDS Human protein_coding chr18:29041236 chr18:29041235 stopgain 0.383 0 20 hm7G_associated_SNPs_37486 0 0 0 0 1 DSG3 chr18:29041190 3'AG 29041190 Downstream 46bp 34501 chr1 3389976 3389976 1 + C T SKCM 3389977 + 3389957 3389997 41 AAGCAGCAACGCCGCCTTCCGAGAGGCCCTGAGAGAGATTG AAGCAGCAACGCCGCCTTCTGAGAGGCCCTGAGAGAGATTG < 41bp 0.544353793980235 0.745584279746993 NA NA prediction 0.402460971533516 Functional Gain - ARHGEF16 ENSG00000130762 CDS Human protein_coding chr1:3389977 chr1:3389976 stopgain 0.007 0 20 hm7G_associated_SNPs_37487 0 0 0 0 1 ARHGEF16 chr1:3389957 3'AG 3389957 Downstream 20bp 34502 chr17 72443058 72443058 1 + C T SKCM 72443059 + 72443039 72443079 41 GTGATGGGCAGTGCCAACTCGACCCTGCGGGCTGAAGACAT GTGATGGGCAGTGCCAACTTGACCCTGCGGGCTGAAGACAT < 41bp 0.491930535234599 0.701227852670835 NA NA prediction 0.40245570534167 Functional Gain - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72443059 chr17:72443058 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_37489 0 0 1 0 2 GPRC5C chr17:72442988 3'AG 72442988 Downstream 71bp 34503 chr17 72443058 72443058 1 + C T SKCM 72443059 + 72443039 72443079 41 GTGATGGGCAGTGCCAACTCGACCCTGCGGGCTGAAGACAT GTGATGGGCAGTGCCAACTTGACCCTGCGGGCTGAAGACAT < 41bp 0.491930535234599 0.701227852670835 NA NA prediction 0.40245570534167 Functional Gain - GPRC5C ENSG00000170412 CDS Human protein_coding chr17:72443059 chr17:72443058 nonsynonymous SNV 0.990 3 20 hm7G_associated_SNPs_37489 0 0 1 0 2 GPRC5C chr17:72443137 5'GT 72443137 Upstream 80bp 34504 chr8 11420558 11420558 1 + C T STAD 11420559 + 11420539 11420579 41 TCTTCACCATCAAAGCAGACGTGTGGTCGTTTGGAGTCCTC TCTTCACCATCAAAGCAGATGTGTGGTCGTTTGGAGTCCTC < 41bp 0.528058511510428 0.729286118084132 NA NA prediction 0.402455213147408 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11420559 chr8:11420558 synonymous SNV . 0 20 hm7G_associated_SNPs_37490 0 0 0 0 2 BLK chr8:11420488 3'AG 11420488 Downstream 71bp 34505 chr8 11420558 11420558 1 + C T STAD 11420559 + 11420539 11420579 41 TCTTCACCATCAAAGCAGACGTGTGGTCGTTTGGAGTCCTC TCTTCACCATCAAAGCAGATGTGTGGTCGTTTGGAGTCCTC < 41bp 0.528058511510428 0.729286118084132 NA NA prediction 0.402455213147408 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11420559 chr8:11420558 synonymous SNV . 0 20 hm7G_associated_SNPs_37490 0 0 0 0 2 BLK chr8:11420619 5'GT 11420619 Upstream 62bp 34506 chr16 68289732 68289732 1 + G A COAD 68289733 + 68289713 68289753 41 GAGATGTACCAGCTGTATGGGGGCCCCGTGGTGCTGGTTGC GAGATGTACCAGCTGTATGAGGGCCCCGTGGTGCTGGTTGC < 41bp 0.528042750085431 0.729269967736991 NA NA prediction 0.402454435303119 Functional Gain - PLA2G15 ENSG00000103066 CDS Human protein_coding chr16:68289733 chr16:68289732 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37491 0 0 0 0 1 PLA2G15 chr16:68289669 3'AG 68289669 Downstream 64bp 34507 chr2 102636165 102636165 1 + C T HNSC 102636166 + 102636146 102636186 41 GGGGGACCACTCACTTACTCGTACACGATGTGGCCCTGGAA GGGGGACCACTCACTTACTTGTACACGATGTGGCCCTGGAA < 41bp 0.493937562714606 0.701224777535567 NA NA prediction 0.402449555071134 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102636166 chr2:102636165 synonymous SNV . 0 20 hm7G_associated_SNPs_37492 0 0 0 0 1 IL1R2 chr2:102636100 3'AG 102636100 Downstream 66bp 34508 chr15 64701816 64701816 1 + C T COAD 64701817 + 64701797 64701837 41 TTCCCTTTTTCTCAGTATTCGAAGGACCCAAGTCATTGATG TTCCCTTTTTCTCAGTATTTGAAGGACCCAAGTCATTGATG < 41bp 0.529189885813518 0.730412404984908 NA NA prediction 0.40244503834278 Functional Gain - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64701817 chr15:64701816 stopgain 0.990 1 20 hm7G_associated_SNPs_37493 1 0 0 0 1 TRIP4 chr15:64701812 3'AG 64701812 Downstream 5bp 34509 chr19 33623312 33623312 1 + G A HNSC 33623313 + 33623293 33623333 41 CTGAGAAGCACCAGGTGCCGGAGAAATTGATCTGGGGCGAC CTGAGAAGCACCAGGTGCCAGAGAAATTGATCTGGGGCGAC < 41bp 0.493079833845999 0.701222304381797 NA NA prediction 0.402444608763593 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33623313 chr19:33623312 synonymous SNV . 0 20 hm7G_associated_SNPs_37494 0 0 0 0 1 WDR88 chr19:33623351 5'GT 33623351 Upstream 40bp 34510 chr1 17257067 17257067 1 + C T COAD 17257068 + 17257048 17257088 41 GAGCTGGAGCACCGGGAGGCGGCGTGGAGGCGCGAGGAGGA GAGCTGGAGCACCGGGAGGTGGCGTGGAGGCGCGAGGAGGA < 41bp 0.511702180095945 0.712922643239073 NA NA prediction 0.402440926286256 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17257068 chr1:17257067 nonsynonymous SNV 0.924 2 20 hm7G_associated_SNPs_37497 0 0 0 0 1 CROCC chr1:17257089 5'GT 17257089 Upstream 23bp 34511 chr15 74574148 74574148 1 + G T LUAD 74574149 + 74574129 74574169 41 TGAAAACTATCAATGATGAGGCCCCCACAGTGGCTCTCTCC TGAAAACTATCAATGATGATGCCCCCACAGTGGCTCTCTCC < 41bp 0.345811376719783 0.701217532803025 NA NA prediction 0.402435065606049 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74574149 chr15:74574148 nonsynonymous SNV 0.742 1 20 hm7G_associated_SNPs_37498 0 0 0 0 2 CCDC33 chr15:74574119 3'AG 74574119 Downstream 30bp 34512 chr15 74574148 74574148 1 + G T LUAD 74574149 + 74574129 74574169 41 TGAAAACTATCAATGATGAGGCCCCCACAGTGGCTCTCTCC TGAAAACTATCAATGATGATGCCCCCACAGTGGCTCTCTCC < 41bp 0.345811376719783 0.701217532803025 NA NA prediction 0.402435065606049 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74574149 chr15:74574148 nonsynonymous SNV 0.742 1 20 hm7G_associated_SNPs_37498 0 0 0 0 2 CCDC33 chr15:74574190 5'GT 74574190 Upstream 43bp 34513 chr9 132631247 132631247 1 + C T GBM 132631248 + 132631228 132631268 41 GCCCCCCTCGTGCAAGCCCCGTGAGGATGGCACCGTCGTAC GCCCCCCTCGTGCAAGCCCTGTGAGGATGGCACCGTCGTAC < 41bp 0.502019195696814 0.703236718706057 NA NA prediction 0.402435046018488 Functional Gain - USP20 ENSG00000136878 CDS Human protein_coding chr9:132631248 chr9:132631247 synonymous SNV . 0 20 hm7G_associated_SNPs_37499 0 0 0 0 1 USP20 chr9:132631281 5'GT 132631281 Upstream 35bp 34514 chr19 33597666 33597666 1 + C T rs146034500 33597667 + 33597647 33597687 41 ATTTCAGACCCATGGTGGCCGCCACCTCCGAGAACTCACAC ATTTCAGACCCATGGTGGCTGCCACCTCCGAGAACTCACAC < 41bp 0.563159343074056 0.764376353509989 NA NA prediction 0.402434020871866 Functional Gain - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33597667 chr19:33597666 synonymous SNV . 0 20 hm7G_associated_SNPs_37500 0 0 1 0 1 GPATCH1 chr19:33597601 3'AG 33597601 Downstream 66bp 34515 chr3 10974875 10974875 1 + C T SKCM 10974876 + 10974856 10974896 41 AGCTCTTTGACTCCTATGCCGCCAGTGGGATGTGCCTTCTC AGCTCTTTGACTCCTATGCTGCCAGTGGGATGTGCCTTCTC < 41bp 0.509294639606848 0.710505411650701 NA NA prediction 0.402421544087705 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10974876 chr3:10974875 synonymous SNV . 0 20 hm7G_associated_SNPs_37505 0 0 0 0 1 SLC6A11 chr3:10974939 5'GT 10974939 Upstream 65bp 34516 chr16 66977254 66977254 1 + G A HNSC 66977255 + 66977235 66977275 41 GGAAGATGATGAAGTACTGGGCCAACTTTGCGAGAAATGGG GGAAGATGATGAAGTACTGAGCCAACTTTGCGAGAAATGGG < 41bp 0.549421167936576 0.75063118820466 NA NA prediction 0.402420040536168 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66977255 chr16:66977254 stopgain 1.000 0 20 hm7G_associated_SNPs_37507 0 0 1 0 2 CES2 chr16:66977202 3'AG 66977202 Downstream 53bp 34517 chr16 66977254 66977254 1 + G A HNSC 66977255 + 66977235 66977275 41 GGAAGATGATGAAGTACTGGGCCAACTTTGCGAGAAATGGG GGAAGATGATGAAGTACTGAGCCAACTTTGCGAGAAATGGG < 41bp 0.549421167936576 0.75063118820466 NA NA prediction 0.402420040536168 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66977255 chr16:66977254 stopgain 1.000 0 20 hm7G_associated_SNPs_37507 0 0 1 0 2 CES2 chr16:66977274 5'GT 66977274 Upstream 21bp 34518 chr3 9768378 9768378 1 + C T UCEC 9768379 + 9768359 9768399 41 TGCCCATGTCTATCATTATCGTCGGTGTAGGACCAGCCATG TGCCCATGTCTATCATTATTGTCGGTGTAGGACCAGCCATG < 41bp 0.496543920142031 0.701209964629784 NA NA prediction 0.402419929259568 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9768379 chr3:9768378 synonymous SNV . 0 20 hm7G_associated_SNPs_37508 0 0 0 0 1 CPNE9 chr3:9768349 3'AG 9768349 Downstream 30bp 34519 chr3 9768814 9768814 1 + G T COAD 9768815 + 9768795 9768835 41 AGCAATGGAAGAGTTGGACGGTGATGATGTGCGCGTGTCCT AGCAATGGAAGAGTTGGACTGTGATGATGTGCGCGTGTCCT < 41bp 0.707028906754983 0.908237894929163 NA NA prediction 0.402417976348361 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9768815 chr3:9768814 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_37509 0 0 0 0 2 CPNE9 chr3:9768797 3'AG 9768797 Downstream 18bp 34520 chr3 9768814 9768814 1 + G T COAD 9768815 + 9768795 9768835 41 AGCAATGGAAGAGTTGGACGGTGATGATGTGCGCGTGTCCT AGCAATGGAAGAGTTGGACTGTGATGATGTGCGCGTGTCCT < 41bp 0.707028906754983 0.908237894929163 NA NA prediction 0.402417976348361 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9768815 chr3:9768814 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_37509 0 0 0 0 2 CPNE9 chr3:9768870 5'GT 9768870 Upstream 57bp 34521 chr21 46604951 46604951 1 + G A STAD 46604952 + 46604932 46604972 41 GAGCATCCAAACGTGGGACGGGGTGCTGCAAGGGGAGCGGC GAGCATCCAAACGTGGGACAGGGTGCTGCAAGGGGAGCGGC < 41bp 0.510674237971287 0.711883163844796 NA NA prediction 0.402417851747018 Functional Gain - ADARB1 ENSG00000197381 CDS Human protein_coding chr21:46604952 chr21:46604951 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_37510 0 0 0 0 1 ADARB1 chr21:46605006 5'GT 46605006 Upstream 56bp 34522 chrX 55248256 55248256 1 + G A SARC 55248257 + 55248237 55248277 41 AACCACCAACTGATAATCAGGGTATTGCACCTAGTGGGGAG AACCACCAACTGATAATCAAGGTATTGCACCTAGTGGGGAG < 41bp 0.545640957402191 0.746849303482583 NA NA prediction 0.402416692160784 Functional Gain - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55248257 chrX:55248256 synonymous SNV . 0 20 hm7G_associated_SNPs_37512 0 0 0 0 2 PAGE5 chrX:55248200 3'AG 55248200 Downstream 57bp 34523 chrX 55248256 55248256 1 + G A SARC 55248257 + 55248237 55248277 41 AACCACCAACTGATAATCAGGGTATTGCACCTAGTGGGGAG AACCACCAACTGATAATCAAGGTATTGCACCTAGTGGGGAG < 41bp 0.545640957402191 0.746849303482583 NA NA prediction 0.402416692160784 Functional Gain - PAGE5 ENSG00000158639 CDS Human protein_coding chrX:55248257 chrX:55248256 synonymous SNV . 0 20 hm7G_associated_SNPs_37512 0 0 0 0 2 PAGE5 chrX:55248308 5'GT 55248308 Upstream 53bp 34524 chr11 598472 598472 1 + C T UCEC 598473 + 598453 598493 41 TCAGCGCCCCCTGACGCCGCGCACTCCCGCCCGACGGAAGA TCAGCGCCCCCTGACGCCGTGCACTCCCGCCCGACGGAAGA < 41bp 0.552414987959316 0.7536233015171 NA NA prediction 0.402416627115567 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598473 chr11:598472 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_37513 0 0 1 0 2 PHRF1 chr11:598373 3'AG 598373 Downstream 100bp 34525 chr11 598472 598472 1 + C T UCEC 598473 + 598453 598493 41 TCAGCGCCCCCTGACGCCGCGCACTCCCGCCCGACGGAAGA TCAGCGCCCCCTGACGCCGTGCACTCCCGCCCGACGGAAGA < 41bp 0.552414987959316 0.7536233015171 NA NA prediction 0.402416627115567 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:598473 chr11:598472 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_37513 0 0 1 0 2 PHRF1 chr11:598502 5'GT 598502 Upstream 31bp 34526 chr3 42569585 42569585 1 + C T GBM 42569586 + 42569566 42569606 41 ACTTGGCCCTCTTCGACAGCGGGGAGTCGGACCAGTGCTCC ACTTGGCCCTCTTCGACAGTGGGGAGTCGGACCAGTGCTCC < 41bp 0.50271611759387 0.703923501007295 NA NA prediction 0.402414766826849 Functional Gain - VIPR1 ENSG00000114812 CDS Human protein_coding chr3:42569586 chr3:42569585 synonymous SNV . 0 20 hm7G_associated_SNPs_37514 0 0 0 0 1 VIPR1 chr3:42569615 5'GT 42569615 Upstream 31bp 34527 chr11 61447910 61447910 1 + G A rs539362792 61447911 + 61447891 61447931 41 AGCGGCGTTAGTGAATCGGGGCCTTGGGGAGCCCAGGATGG AGCGGCGTTAGTGAATCGGAGCCTTGGGGAGCCCAGGATGG < 41bp 0.552189398525437 0.753396207578877 NA NA prediction 0.40241361810688 Functional Gain - DAGLA ENSG00000134780 UTR5 Human protein_coding chr11:61447911 chr11:61447910 . . 0 20 hm7G_associated_SNPs_37516 0 0 0 0 1 DAGLA chr11:61447976 5'GT 61447976 Upstream 67bp 34528 chr11 126124235 126124235 1 + C T STAD 126124236 + 126124216 126124256 41 AGGAGAAGCGTAAGCTGAGCGTGTTGCATATTCACGGAGTC AGGAGAAGCGTAAGCTGAGTGTGTTGCATATTCACGGAGTC < 41bp 0.508668116624468 0.709873496609986 NA NA prediction 0.402410759971035 Functional Gain - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126124236 chr11:126124235 synonymous SNV . 0 20 hm7G_associated_SNPs_37517 0 0 0 0 2 FAM118B chr11:126124200 3'AG 126124200 Downstream 36bp 34529 chr11 126124235 126124235 1 + C T STAD 126124236 + 126124216 126124256 41 AGGAGAAGCGTAAGCTGAGCGTGTTGCATATTCACGGAGTC AGGAGAAGCGTAAGCTGAGTGTGTTGCATATTCACGGAGTC < 41bp 0.508668116624468 0.709873496609986 NA NA prediction 0.402410759971035 Functional Gain - FAM118B ENSG00000197798 CDS Human protein_coding chr11:126124236 chr11:126124235 synonymous SNV . 0 20 hm7G_associated_SNPs_37517 0 0 0 0 2 FAM118B chr11:126124328 5'GT 126124328 Upstream 94bp 34530 chr16 68835596 68835596 1 + C T BLCA 68835597 + 68835577 68835617 41 TTTTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTTTT TTTTGAAGATTGCACCGGTTGACAAAGGACAGCCTATTTTT < 41bp 0.521184395354327 0.722389161744589 NA NA prediction 0.402409532780524 Functional Gain - CDH1 ENSG00000039068 CDS Human protein_coding chr16:68835597 chr16:68835596 stopgain 0.087 0 20 hm7G_associated_SNPs_37518 1 0 0 0 1 CDH1 chr16:68835573 3'AG 68835573 Downstream 24bp 34531 chr9 6486915 6486915 1 + C T OV 6486916 + 6486896 6486936 41 GTACTGGCTGGTGGATTTGCGGATGAAGTCGTAAGTCATTA GTACTGGCTGGTGGATTTGTGGATGAAGTCGTAAGTCATTA < 41bp 0.495302323968723 0.701203510694451 NA NA prediction 0.402407021388902 Functional Gain - UHRF2 ENSG00000147854 CDS Human protein_coding chr9:6486916 chr9:6486915 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_37520 0 0 1 0 1 UHRF2 chr9:6486925 5'GT 6486925 Upstream 11bp 34532 chr2 85923104 85923104 1 + G A SKCM 85923105 + 85923085 85923125 41 ACCTGTTGACCAAAACACAGGAGCTGGGCCGTGACTACAGG ACCTGTTGACCAAAACACAAGAGCTGGGCCGTGACTACAGG < 41bp 0.534346465116785 0.735548781018709 NA NA prediction 0.402404631803848 Functional Gain - GNLY ENSG00000115523 CDS Human protein_coding chr2:85923105 chr2:85923104 synonymous SNV . 0 20 hm7G_associated_SNPs_37523 0 0 0 0 1 GNLY chr2:85923179 5'GT 85923179 Upstream 76bp 34533 chr16 31374539 31374539 1 + G A SKCM 31374540 + 31374520 31374560 41 GGGAGCAGGGCCACCCCTGGGGTCGCTTTGGGGCGGCTCTG GGGAGCAGGGCCACCCCTGAGGTCGCTTTGGGGCGGCTCTG < 41bp 0.466219518839993 0.701202151545956 NA NA prediction 0.402404303091912 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31374540 chr16:31374539 stopgain 0.999 0 20 hm7G_associated_SNPs_37524 0 0 0 0 1 ITGAX chr16:31374486 3'AG 31374486 Downstream 54bp 34534 chr6 159642680 159642680 1 + C T GBM 159642681 + 159642661 159642701 41 GTCCATGAACTCTCAGGGCCGGAGCCAACCAGTCTACAGGG GTCCATGAACTCTCAGGGCTGGAGCCAACCAGTCTACAGGG < 41bp 0.547845503685416 0.749046238893403 NA NA prediction 0.402401470415974 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159642681 chr6:159642680 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_37525 0 0 0 0 2 FNDC1 chr6:159642630 3'AG 159642630 Downstream 51bp 34535 chr6 159642680 159642680 1 + C T GBM 159642681 + 159642661 159642701 41 GTCCATGAACTCTCAGGGCCGGAGCCAACCAGTCTACAGGG GTCCATGAACTCTCAGGGCTGGAGCCAACCAGTCTACAGGG < 41bp 0.547845503685416 0.749046238893403 NA NA prediction 0.402401470415974 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159642681 chr6:159642680 nonsynonymous SNV 0.993 2 20 hm7G_associated_SNPs_37525 0 0 0 0 2 FNDC1 chr6:159642728 5'GT 159642728 Upstream 49bp 34536 chr22 39411612 39411612 1 + G A HNSC 39411613 + 39411593 39411633 41 CCTTCAGAAACCCGATGAAGGCAATGTATCCAGGCACATTC CCTTCAGAAACCCGATGAAAGCAATGTATCCAGGCACATTC < 41bp 0.48102937914792 0.701199290858148 NA NA prediction 0.402398581716295 Functional Gain - APOBEC3C ENSG00000244509 CDS Human protein_coding chr22:39411613 chr22:39411612 synonymous SNV . 0 20 hm7G_associated_SNPs_37527 0 0 1 0 1 APOBEC3C chr22:39411600 3'AG 39411600 Downstream 13bp 34537 chr20 43615854 43615854 1 + C T UCEC 43615855 + 43615835 43615875 41 TTTTATGAGAAAAATACACCGAGATATCAAGGCAGGAAATA TTTTATGAGAAAAATACACTGAGATATCAAGGCAGGAAATA < 41bp 0.54348766998527 0.744686384418468 NA NA prediction 0.402397428866396 Functional Gain - STK4 ENSG00000101109 CDS Human protein_coding chr20:43615855 chr20:43615854 stopgain 0.995 1 20 hm7G_associated_SNPs_37529 0 0 1 0 2 STK4 chr20:43615773 3'AG 43615773 Downstream 82bp 34538 chr20 43615854 43615854 1 + C T UCEC 43615855 + 43615835 43615875 41 TTTTATGAGAAAAATACACCGAGATATCAAGGCAGGAAATA TTTTATGAGAAAAATACACTGAGATATCAAGGCAGGAAATA < 41bp 0.54348766998527 0.744686384418468 NA NA prediction 0.402397428866396 Functional Gain - STK4 ENSG00000101109 CDS Human protein_coding chr20:43615855 chr20:43615854 stopgain 0.995 1 20 hm7G_associated_SNPs_37529 0 0 1 0 2 STK4 chr20:43615937 5'GT 43615937 Upstream 84bp 34539 chr3 51978827 51978827 1 + C T COAD 51978828 + 51978808 51978848 41 AGTGAGGACTGTGACTAAGCGGGTGCAGCCCTGCTCCCTGG AGTGAGGACTGTGACTAAGTGGGTGCAGCCCTGCTCCCTGG < 41bp 0.526372380656598 0.727568447976608 NA NA prediction 0.40239213464002 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978828 chr3:51978827 nonsynonymous SNV 0.314 0 20 hm7G_associated_SNPs_37531 0 0 1 0 2 PARP3 chr3:51978794 3'AG 51978794 Downstream 34bp 34540 chr3 51978827 51978827 1 + C T COAD 51978828 + 51978808 51978848 41 AGTGAGGACTGTGACTAAGCGGGTGCAGCCCTGCTCCCTGG AGTGAGGACTGTGACTAAGTGGGTGCAGCCCTGCTCCCTGG < 41bp 0.526372380656598 0.727568447976608 NA NA prediction 0.40239213464002 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978828 chr3:51978827 nonsynonymous SNV 0.314 0 20 hm7G_associated_SNPs_37531 0 0 1 0 2 PARP3 chr3:51978926 5'GT 51978926 Upstream 100bp 34541 chr7 150171145 150171145 1 + C T STAD 150171146 + 150171126 150171166 41 ACAGGACCCGAGCAGAATCCGGGGACATCAGAACTGACAGT ACAGGACCCGAGCAGAATCTGGGGACATCAGAACTGACAGT < 41bp 0.525239973830827 0.726431826505275 NA NA prediction 0.402383705348896 Functional Gain - GIMAP8 ENSG00000171115 CDS Human protein_coding chr7:150171146 chr7:150171145 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_37532 0 0 0 0 1 GIMAP8 chr7:150171100 3'AG 150171100 Downstream 46bp 34542 chr19 18966003 18966003 1 + C T SKCM 18966004 + 18965984 18966024 41 CCGCCAGGCACGGGGAAGACGGTGACGTCGGCCACCATCGT CCGCCAGGCACGGGGAAGATGGTGACGTCGGCCACCATCGT < 41bp 0.552851766410921 0.754038071031852 NA NA prediction 0.402372609241862 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966004 chr19:18966003 nonsynonymous SNV 0.967 5 20 hm7G_associated_SNPs_37535 0 0 1 0 2 UPF1 chr19:18965933 3'AG 18965933 Downstream 71bp 34543 chr19 18966003 18966003 1 + C T SKCM 18966004 + 18965984 18966024 41 CCGCCAGGCACGGGGAAGACGGTGACGTCGGCCACCATCGT CCGCCAGGCACGGGGAAGATGGTGACGTCGGCCACCATCGT < 41bp 0.552851766410921 0.754038071031852 NA NA prediction 0.402372609241862 Functional Gain - UPF1 ENSG00000005007 CDS Human protein_coding chr19:18966004 chr19:18966003 nonsynonymous SNV 0.967 5 20 hm7G_associated_SNPs_37535 0 0 1 0 2 UPF1 chr19:18966051 5'GT 18966051 Upstream 49bp 34544 chr16 27786370 27786370 1 + C T CESC 27786371 + 27786351 27786391 41 GAACGACACCAGTGATGGCCGGCACATGTGGCTGGCTCCCA GAACGACACCAGTGATGGCTGGCACATGTGGCTGGCTCCCA < 41bp 0.547673790736217 0.748859420556167 NA NA prediction 0.402371259639901 Functional Gain - KIAA0556 ENSG00000047578 CDS Human protein_coding chr16:27786371 chr16:27786370 nonsynonymous SNV 0.958 4 20 hm7G_associated_SNPs_37536 0 0 0 0 1 KIAA0556 chr16:27786405 5'GT 27786405 Upstream 36bp 34545 chr5 23509638 23509638 1 + G T LGG 23509639 + 23509619 23509659 41 AGGAAGAATGGGCAGAGATGGGAGACTGGGAGAAAACTCGC AGGAAGAATGGGCAGAGATTGGAGACTGGGAGAAAACTCGC < 41bp 0.708937564318016 0.910122957959829 NA NA prediction 0.402370787283625 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509639 chr5:23509638 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_37538 0 0 0 0 2 PRDM9 chr5:23509579 3'AG 23509579 Downstream 60bp 34546 chr5 23509638 23509638 1 + G T LGG 23509639 + 23509619 23509659 41 AGGAAGAATGGGCAGAGATGGGAGACTGGGAGAAAACTCGC AGGAAGAATGGGCAGAGATTGGAGACTGGGAGAAAACTCGC < 41bp 0.708937564318016 0.910122957959829 NA NA prediction 0.402370787283625 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509639 chr5:23509638 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_37538 0 0 0 0 2 PRDM9 chr5:23509702 5'GT 23509702 Upstream 65bp 34547 chr11 125281699 125281699 1 + C T LUSC 125281700 + 125281680 125281720 41 TAAGAAGTCCAAGAACAAACGAGGAGTCTTGCCCAAGCATG TAAGAAGTCCAAGAACAAATGAGGAGTCTTGCCCAAGCATG < 41bp 0.538984280829464 0.740168302625201 NA NA prediction 0.402368043591472 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125281700 chr11:125281699 stopgain 1.000 1 20 hm7G_associated_SNPs_37541 0 0 0 0 2 PKNOX2 chr11:125281642 3'AG 125281642 Downstream 58bp 34548 chr11 125281699 125281699 1 + C T LUSC 125281700 + 125281680 125281720 41 TAAGAAGTCCAAGAACAAACGAGGAGTCTTGCCCAAGCATG TAAGAAGTCCAAGAACAAATGAGGAGTCTTGCCCAAGCATG < 41bp 0.538984280829464 0.740168302625201 NA NA prediction 0.402368043591472 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125281700 chr11:125281699 stopgain 1.000 1 20 hm7G_associated_SNPs_37541 0 0 0 0 2 PKNOX2 chr11:125281761 5'GT 125281761 Upstream 63bp 34549 chr3 101571959 101571959 1 + G A HNSC 101571960 + 101571940 101571980 41 ACCTCAAACACCAACGCCCGGGGAGAGCATGGAAGATGTTC ACCTCAAACACCAACGCCCAGGGAGAGCATGGAAGATGTTC < 41bp 0.532063424990537 0.73324730962939 NA NA prediction 0.402367769277707 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101571960 chr3:101571959 nonsynonymous SNV 0.259 0 20 hm7G_associated_SNPs_37542 0 0 1 0 1 NFKBIZ chr3:101571935 3'AG 101571935 Downstream 25bp 34550 chr8 24192967 24192967 1 + G T LUSC 24192968 + 24192948 24192988 41 TTTTTCTACAGTTTAAAAAGGCTGGGATGGTGTGCAGACCA TTTTTCTACAGTTTAAAAATGCTGGGATGGTGTGCAGACCA < 41bp 0.696068269200474 0.89725089166408 NA NA prediction 0.402365244927212 Functional Gain - ADAM28 ENSG00000042980 CDS Human protein_coding chr8:24192968 chr8:24192967 nonsynonymous SNV 0.950 2 20 hm7G_associated_SNPs_37543 0 0 0 0 1 ADAM28 chr8:24192959 3'AG 24192959 Downstream 9bp 34551 chr12 50367324 50367324 1 + C T OV 50367325 + 50367305 50367345 41 CTGCTTTATGGGGTCATGCCGGGAGACATCCGAGAGACCCT CTGCTTTATGGGGTCATGCTGGGAGACATCCGAGAGACCCT < 41bp 0.494117268431049 0.701181904453098 NA NA prediction 0.402363808906196 Functional Gain - AQP6 ENSG00000086159 CDS Human protein_coding chr12:50367325 chr12:50367324 nonsynonymous SNV 0.003 5 20 hm7G_associated_SNPs_37544 0 0 0 0 1 AQP6 chr12:50367358 5'GT 50367358 Upstream 35bp 34552 chr21 47539743 47539743 1 + C T CESC 47539744 + 47539724 47539764 41 CCAAGGGCAGCCCAGGCAGCGATGGCCCCAAGGGGGAGAAG CCAAGGGCAGCCCAGGCAGTGATGGCCCCAAGGGGGAGAAG < 41bp 0.536434367596223 0.737615871078256 NA NA prediction 0.402363006964064 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47539744 chr21:47539743 synonymous SNV . 0 20 hm7G_associated_SNPs_37545 0 0 0 0 2 COL6A2 chr21:47539702 3'AG 47539702 Downstream 42bp 34553 chr21 47539743 47539743 1 + C T CESC 47539744 + 47539724 47539764 41 CCAAGGGCAGCCCAGGCAGCGATGGCCCCAAGGGGGAGAAG CCAAGGGCAGCCCAGGCAGTGATGGCCCCAAGGGGGAGAAG < 41bp 0.536434367596223 0.737615871078256 NA NA prediction 0.402363006964064 Functional Gain - COL6A2 ENSG00000142173 CDS Human protein_coding chr21:47539744 chr21:47539743 synonymous SNV . 0 20 hm7G_associated_SNPs_37545 0 0 0 0 2 COL6A2 chr21:47539764 5'GT 47539764 Upstream 22bp 34554 chr19 7570314 7570314 1 + G T SARC 7570315 + 7570295 7570335 41 GCCGAGCACTTCTATGCCAGGGAGCCAGGTGAGAGCCTGAG GCCGAGCACTTCTATGCCATGGAGCCAGGTGAGAGCCTGAG < 41bp 0.710201873493614 0.911381589852998 NA NA prediction 0.40235943271877 Functional Gain - TEX45 ENSG00000198723 CDS Human protein_coding chr19:7570315 chr19:7570314 nonsynonymous SNV 0.034 2 20 hm7G_associated_SNPs_37547 0 0 0 0 1 TEX45 chr19:7570322 5'GT 7570322 Upstream 9bp 34555 chr9 82242321 82242321 1 + G T LUAD 82242322 + 82242302 82242342 41 TGGTGCAGGCTGTGGAACGGGCCAAGCAGGTGACCATGGCA TGGTGCAGGCTGTGGAACGTGCCAAGCAGGTGACCATGGCA < 41bp 0.391047665495292 0.701179478435824 NA NA prediction 0.402358956871647 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82242322 chr9:82242321 synonymous SNV . 0 20 hm7G_associated_SNPs_37548 0 0 1 0 2 TLE4 chr9:82242289 3'AG 82242289 Downstream 33bp 34556 chr9 82242321 82242321 1 + G T LUAD 82242322 + 82242302 82242342 41 TGGTGCAGGCTGTGGAACGGGCCAAGCAGGTGACCATGGCA TGGTGCAGGCTGTGGAACGTGCCAAGCAGGTGACCATGGCA < 41bp 0.391047665495292 0.701179478435824 NA NA prediction 0.402358956871647 Functional Gain - TLE4 ENSG00000106829 CDS Human protein_coding chr9:82242322 chr9:82242321 synonymous SNV . 0 20 hm7G_associated_SNPs_37548 0 0 1 0 2 TLE4 chr9:82242363 5'GT 82242363 Upstream 43bp 34557 chr5 176008484 176008484 1 + C T SKCM 176008485 + 176008465 176008505 41 CCCTGGACAGAGAGGCCATCGACCCCGCCCTGGAGGGCCGC CCCTGGACAGAGAGGCCATTGACCCCGCCCTGGAGGGCCGC < 41bp 0.55146458741555 0.752640143220808 NA NA prediction 0.402351111610517 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176008485 chr5:176008484 synonymous SNV . 0 20 hm7G_associated_SNPs_37550 0 0 1 0 1 CDHR2 chr5:176008583 5'GT 176008583 Upstream 100bp 34558 chr15 90281451 90281451 1 + C T COAD 90281452 + 90281432 90281472 41 ACTGGAGAAGAGATGTGAGCGTTTCCTCCAGAAGAGGTAAA ACTGGAGAAGAGATGTGAGTGTTTCCTCCAGAAGAGGTAAA < 41bp 0.518560344042802 0.71973483551174 NA NA prediction 0.402348982937876 Functional Gain - WDR93 ENSG00000140527 CDS Human protein_coding chr15:90281452 chr15:90281451 nonsynonymous SNV 0.088 1 20 hm7G_associated_SNPs_37551 0 0 0 0 1 WDR93 chr15:90281467 5'GT 90281467 Upstream 17bp 34559 chr7 296993 296993 1 + C T rs376430486 296994 + 296974 297014 41 ACATGGACCGTCACCACTACGAGACTTTTGAGAAGTTTGGG ACATGGACCGTCACCACTATGAGACTTTTGAGAAGTTTGGG < 41bp 0.536725585731207 0.737898955420906 NA NA prediction 0.402346739379398 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:296994 chr7:296993 synonymous SNV . 0 20 hm7G_associated_SNPs_37552 0 0 0 0 1 FAM20C chr7:296971 3'AG 296971 Downstream 23bp 34560 chr17 79769778 79769778 1 + C T rs147520731 79769779 + 79769759 79769799 41 CAGGTGCCCCCATGCTGTTCGTCGTCCCCTGGGCAGTGGTC CAGGTGCCCCCATGCTGTTTGTCGTCCCCTGGGCAGTGGTC < 41bp 0.49554533338417 0.701171692017621 NA NA prediction 0.402343384035241 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769779 chr17:79769778 synonymous SNV . 0 20 hm7G_associated_SNPs_37553 0 0 0 0 2 GCGR chr17:79769762 3'AG 79769762 Downstream 17bp 34561 chr17 79769778 79769778 1 + C T rs147520731 79769779 + 79769759 79769799 41 CAGGTGCCCCCATGCTGTTCGTCGTCCCCTGGGCAGTGGTC CAGGTGCCCCCATGCTGTTTGTCGTCCCCTGGGCAGTGGTC < 41bp 0.49554533338417 0.701171692017621 NA NA prediction 0.402343384035241 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79769779 chr17:79769778 synonymous SNV . 0 20 hm7G_associated_SNPs_37553 0 0 0 0 2 GCGR chr17:79769822 5'GT 79769822 Upstream 45bp 34562 chr3 128758636 128758636 1 + C T BLCA 128758637 + 128758617 128758657 41 CTGTTGCGGAGACAGCCCTCGGCACCAGCCTCTGCAGCAGC CTGTTGCGGAGACAGCCCTTGGCACCAGCCTCTGCAGCAGC < 41bp 0.506566578141462 0.707737999023606 NA NA prediction 0.402342841764288 Functional Gain - EFCC1 ENSG00000114654 CDS Human protein_coding chr3:128758637 chr3:128758636 nonsynonymous SNV 0.007 0 20 hm7G_associated_SNPs_37554 0 0 0 0 1 EFCC1 chr3:128758555 3'AG 128758555 Downstream 82bp 34563 chr12 132464291 132464291 1 + C T STAD 132464292 + 132464272 132464312 41 GCCGGAAGCACAGTAGAGACGGACCTGTTTAAGAGGCAGCA GCCGGAAGCACAGTAGAGATGGACCTGTTTAAGAGGCAGCA < 41bp 0.52398889601587 0.7251600090753 NA NA prediction 0.40234222611886 Functional Gain - EP400 ENSG00000183495 CDS Human protein_coding chr12:132464292 chr12:132464291 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_37555 0 0 1 0 3 EP400 chr12:132464239 3'AG 132464239 Downstream 53bp 34564 chr12 132464291 132464291 1 + C T STAD 132464292 + 132464272 132464312 41 GCCGGAAGCACAGTAGAGACGGACCTGTTTAAGAGGCAGCA GCCGGAAGCACAGTAGAGATGGACCTGTTTAAGAGGCAGCA < 41bp 0.52398889601587 0.7251600090753 NA NA prediction 0.40234222611886 Functional Gain - EP400 ENSG00000183495 CDS Human protein_coding chr12:132464292 chr12:132464291 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_37555 0 0 1 0 3 EP400 chr12:132464242 3'AG 132464242 Downstream 50bp 34565 chr12 132464291 132464291 1 + C T STAD 132464292 + 132464272 132464312 41 GCCGGAAGCACAGTAGAGACGGACCTGTTTAAGAGGCAGCA GCCGGAAGCACAGTAGAGATGGACCTGTTTAAGAGGCAGCA < 41bp 0.52398889601587 0.7251600090753 NA NA prediction 0.40234222611886 Functional Gain - EP400 ENSG00000183495 CDS Human protein_coding chr12:132464292 chr12:132464291 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_37555 0 0 1 0 3 EP400 chr12:132464338 5'GT 132464338 Upstream 48bp 34566 chr6 167595260 167595260 1 + G T LUSC 167595261 + 167595241 167595281 41 TGGAAATAGCACAGGCCATGGACACTAAGATGAAAAAGGAG TGGAAATAGCACAGGCCATTGACACTAAGATGAAAAAGGAG < 41bp 0.381864919722867 0.701169070356941 NA NA prediction 0.402338140713882 Functional Gain - TCP10L2 ENSG00000166984 CDS Human protein_coding chr6:167595261 chr6:167595260 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_37557 0 0 0 0 1 TCP10L2 chr6:167595213 3'AG 167595213 Downstream 48bp 34567 chr20 31657725 31657725 1 + C T rs79150816 31657726 + 31657706 31657746 41 CGTGCCCAGCTGGCTCCCTCGGCTACCAAGCTGCACATCTC CGTGCCCAGCTGGCTCCCTTGGCTACCAAGCTGCACATCTC < 41bp 0.51651134693083 0.71767969826762 NA NA prediction 0.402336702673579 Functional Gain - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31657726 chr20:31657725 nonsynonymous SNV 0.086 0 20 hm7G_associated_SNPs_37558 0 0 0 0 2 BPIFB3 chr20:31657694 3'AG 31657694 Downstream 32bp 34568 chr20 31657725 31657725 1 + C T rs79150816 31657726 + 31657706 31657746 41 CGTGCCCAGCTGGCTCCCTCGGCTACCAAGCTGCACATCTC CGTGCCCAGCTGGCTCCCTTGGCTACCAAGCTGCACATCTC < 41bp 0.51651134693083 0.71767969826762 NA NA prediction 0.402336702673579 Functional Gain - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31657726 chr20:31657725 nonsynonymous SNV 0.086 0 20 hm7G_associated_SNPs_37558 0 0 0 0 2 BPIFB3 chr20:31657761 5'GT 31657761 Upstream 37bp 34569 chr1 14142944 14142944 1 + C T READ 14142945 + 14142925 14142965 41 CAGCCTCCGCTTGGCGTCCCGATGCTCTCCACCAGCGGCCC CAGCCTCCGCTTGGCGTCCTGATGCTCTCCACCAGCGGCCC < 41bp 0.485256717520018 0.701167961812833 NA NA prediction 0.402335923625665 Functional Gain - PRDM2 ENSG00000116731 CDS Human protein_coding chr1:14142945 chr1:14142944 stopgain 0.695 1 20 hm7G_associated_SNPs_37559 0 0 0 0 1 PRDM2 chr1:14142922 3'AG 14142922 Downstream 23bp 34570 chr14 65381176 65381176 1 + G A SKCM 65381177 + 65381157 65381197 41 CGCGAGGTTTCGTCTTCCCGGAAGCGTTGGAGGACATTCCC CGCGAGGTTTCGTCTTCCCAGAAGCGTTGGAGGACATTCCC < 41bp 0.497925968732971 0.701167917676977 NA NA prediction 0.402335835353954 Functional Gain - CHURC1;CHURC1-FNTB ENSG00000258289 CDS Human other chr14:65381177 chr14:65381176 nonsynonymous SNV 0.497 1 20 hm7G_associated_SNPs_37560 0 0 1 0 1 CHURC1;CHURC1-FNTB chr14:65381252 5'GT 65381252 Upstream 77bp 34571 chr12 56415317 56415317 1 + G A rs79137765 56415318 + 56415298 56415338 41 CCCTCGCCGTTTCCAAGGCGGCGGCCGCGTTCGCACCCCAG CCCTCGCCGTTTCCAAGGCAGCGGCCGCGTTCGCACCCCAG < 41bp 0.538844559281784 0.740010831732183 NA NA prediction 0.402332544900797 Functional Gain - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56415318 chr12:56415317 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_37561 0 0 0 0 1 IKZF4 chr12:56415364 5'GT 56415364 Upstream 48bp 34572 chrX 107938509 107938509 1 + G T UCEC 107938510 + 107938490 107938530 41 TTTATAGCATACAAGTGCAGGGGCAGAAGGCTCAGGTCAAG TTTATAGCATACAAGTGCATGGGCAGAAGGCTCAGGTCAAG < 41bp 0.372092273058656 0.701165813043584 NA NA prediction 0.402331626087168 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107938510 chrX:107938509 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_37562 0 0 1 0 1 COL4A5 chrX:107938497 3'AG 107938497 Downstream 13bp 34573 chr11 64111274 64111274 1 + C T SKCM 64111275 + 64111255 64111295 41 CTAGCAGGAGCGGCCCCCTCGCTGCAAGATGAGGTGAGGGA CTAGCAGGAGCGGCCCCCTTGCTGCAAGATGAGGTGAGGGA < 41bp 0.553743932282651 0.754908155759544 NA NA prediction 0.402328446953786 Functional Gain - CCDC88B ENSG00000168071 CDS Human protein_coding chr11:64111275 chr11:64111274 nonsynonymous SNV 0.325 3 20 hm7G_associated_SNPs_37565 0 0 0 0 1 CCDC88B chr11:64111250 3'AG 64111250 Downstream 25bp 34574 chr19 56012123 56012123 1 + G T ESCA 56012124 + 56012104 56012144 41 CTGCCCCTCGGGGGCTTGGGGGAAGCACAACTGTGACCACG CTGCCCCTCGGGGGCTTGGTGGAAGCACAACTGTGACCACG < 41bp 0.347637978090551 0.701161882521239 NA NA prediction 0.402323765042478 Functional Gain - SSC5D ENSG00000179954 CDS Human protein_coding chr19:56012124 chr19:56012123 nonsynonymous SNV 0.969 3 20 hm7G_associated_SNPs_37569 0 0 0 0 1 SSC5D chr19:56012171 5'GT 56012171 Upstream 49bp 34575 chr6 74124329 74124329 1 + C T COAD 74124330 + 74124310 74124350 41 GAGGACTTGATGTCCATGACGTTACACATGTCTATAATTTT GAGGACTTGATGTCCATGATGTTACACATGTCTATAATTTT < 41bp 0.503850679311356 0.705011209317937 NA NA prediction 0.402321060013163 Functional Gain - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74124330 chr6:74124329 synonymous SNV . 0 20 hm7G_associated_SNPs_37570 0 0 0 0 1 DDX43 chr6:74124271 3'AG 74124271 Downstream 59bp 34576 chr9 131117991 131117991 1 + C T STAD 131117992 + 131117972 131118012 41 TGGCAACTGTGACCTGGAGCGCTTTGCTCAGGTCTTGGAGA TGGCAACTGTGACCTGGAGTGCTTTGCTCAGGTCTTGGAGA < 41bp 0.49233985801169 0.701155465470993 NA NA prediction 0.402310930941986 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131117992 chr9:131117991 nonsynonymous SNV 0.881 1 20 hm7G_associated_SNPs_37573 0 0 0 0 2 SLC27A4 chr9:131117929 3'AG 131117929 Downstream 63bp 34577 chr9 131117991 131117991 1 + C T STAD 131117992 + 131117972 131118012 41 TGGCAACTGTGACCTGGAGCGCTTTGCTCAGGTCTTGGAGA TGGCAACTGTGACCTGGAGTGCTTTGCTCAGGTCTTGGAGA < 41bp 0.49233985801169 0.701155465470993 NA NA prediction 0.402310930941986 Functional Gain - SLC27A4 ENSG00000167114 CDS Human protein_coding chr9:131117992 chr9:131117991 nonsynonymous SNV 0.881 1 20 hm7G_associated_SNPs_37573 0 0 0 0 2 SLC27A4 chr9:131118075 5'GT 131118075 Upstream 85bp 34578 chr19 7976170 7976170 1 + G A UCEC 7976171 + 7976151 7976191 41 CCCCAGACCCCACCAAGCCGGACTATGACATCCGGGCCGAC CCCCAGACCCCACCAAGCCAGACTATGACATCCGGGCCGAC < 41bp 0.557561426646945 0.758716872809118 NA NA prediction 0.402310892324345 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976171 chr19:7976170 synonymous SNV . 0 20 hm7G_associated_SNPs_37574 0 0 1 0 2 MAP2K7 chr19:7976135 3'AG 7976135 Downstream 36bp 34579 chr19 7976170 7976170 1 + G A UCEC 7976171 + 7976151 7976191 41 CCCCAGACCCCACCAAGCCGGACTATGACATCCGGGCCGAC CCCCAGACCCCACCAAGCCAGACTATGACATCCGGGCCGAC < 41bp 0.557561426646945 0.758716872809118 NA NA prediction 0.402310892324345 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7976171 chr19:7976170 synonymous SNV . 0 20 hm7G_associated_SNPs_37574 0 0 1 0 2 MAP2K7 chr19:7976215 5'GT 7976215 Upstream 46bp 34580 chr16 81641207 81641207 1 + C T COAD 81641208 + 81641188 81641228 41 AAAACTCAGTCTCCTACAGCGCAATTGAAGACGTTCAGCTG AAAACTCAGTCTCCTACAGTGCAATTGAAGACGTTCAGCTG < 41bp 0.54176429961119 0.742917314209921 NA NA prediction 0.402306029197463 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81641208 chr16:81641207 synonymous SNV . 0 20 hm7G_associated_SNPs_37575 0 0 1 0 2 CMIP chr16:81641172 3'AG 81641172 Downstream 36bp 34581 chr16 81641207 81641207 1 + C T COAD 81641208 + 81641188 81641228 41 AAAACTCAGTCTCCTACAGCGCAATTGAAGACGTTCAGCTG AAAACTCAGTCTCCTACAGTGCAATTGAAGACGTTCAGCTG < 41bp 0.54176429961119 0.742917314209921 NA NA prediction 0.402306029197463 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81641208 chr16:81641207 synonymous SNV . 0 20 hm7G_associated_SNPs_37575 0 0 1 0 2 CMIP chr16:81641297 5'GT 81641297 Upstream 91bp 34582 chr2 121742317 121742317 1 + G A rs199958307 121742318 + 121742298 121742338 41 CATCAAGACCGAGAGCTCCGGGGTAAGCGGAGCTGGGCAGC CATCAAGACCGAGAGCTCCAGGGTAAGCGGAGCTGGGCAGC < 41bp 0.548058816145982 0.749211647957752 NA NA prediction 0.40230566362354 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121742318 chr2:121742317 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_37576 0 0 0 0 1 GLI2 chr2:121742319 5'GT 121742319 Upstream 3bp 34583 chr10 43601916 43601916 1 + C T THCA 43601917 + 43601897 43601937 41 ACACAAGCACGCTGCTCCCCGGGGACACCTGGGCCCAGCAG ACACAAGCACGCTGCTCCCTGGGGACACCTGGGCCCAGCAG < 41bp 0.552478235804423 0.753630952176104 NA NA prediction 0.402305432743363 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43601917 chr10:43601916 synonymous SNV . 0 20 hm7G_associated_SNPs_37577 0 0 0 0 1 RET chr10:43601824 3'AG 43601824 Downstream 93bp 34584 chr6 7880494 7880494 1 + C T BLCA 7880495 + 7880475 7880515 41 ACTAAGCTAAATGCCATCTCGGTTCTTTACTTTGATGACAA ACTAAGCTAAATGCCATCTTGGTTCTTTACTTTGATGACAA < 41bp 0.499628067024029 0.701151839986517 NA NA prediction 0.402303679973034 Functional Gain - BMP6 ENSG00000153162 CDS Human protein_coding chr6:7880495 chr6:7880494 nonsynonymous SNV 0.961 5 20 hm7G_associated_SNPs_37580 0 0 0 0 1 BMP6 chr6:7880427 3'AG 7880427 Downstream 68bp 34585 chr11 61252164 61252164 1 + G A UCEC 61252165 + 61252145 61252185 41 CCTTCTTCCTCCCAGGTCCGGAAGGTCCATTTCGACACCCA CCTTCTTCCTCCCAGGTCCAGAAGGTCCATTTCGACACCCA < 41bp 0.559205842406473 0.760355318093455 NA NA prediction 0.402298951373964 Functional Gain - PPP1R32 ENSG00000162148 CDS Human protein_coding chr11:61252165 chr11:61252164 nonsynonymous SNV 0.968 0 20 hm7G_associated_SNPs_37582 0 0 0 0 1 PPP1R32 chr11:61252160 3'AG 61252160 Downstream 5bp 34586 chr1 149759998 149759998 1 + G T UCEC 149759999 + 149759979 149760019 41 TGAGGTGTCATGCGTGGAAGGATAAGCTGGTGTACAATGTG TGAGGTGTCATGCGTGGAATGATAAGCTGGTGTACAATGTG < 41bp 0.709649834814503 0.910798967533241 NA NA prediction 0.402298265437476 Functional Gain - FCGR1A ENSG00000150337 CDS Human protein_coding chr1:149759999 chr1:149759998 nonsynonymous SNV 0.991 0 20 hm7G_associated_SNPs_37583 0 0 0 2 1 FCGR1A chr1:149759922 3'AG 149759922 Downstream 77bp 34587 chr2 69472360 69472360 1 + C T COAD 69472361 + 69472341 69472381 41 TCCAATTCTTTTCTAGGGGCGCTGCATCAACTTCACCAGGG TCCAATTCTTTTCTAGGGGTGCTGCATCAACTTCACCAGGG < 41bp 0.515352383359127 0.716500974482613 NA NA prediction 0.402297182246972 Functional Gain - ANTXR1 ENSG00000169604 CDS Human protein_coding chr2:69472361 chr2:69472360 nonsynonymous SNV 0.943 4 20 hm7G_associated_SNPs_37584 0 0 1 0 1 ANTXR1 chr2:69472357 3'AG 69472357 Downstream 4bp 34588 chr2 121742307 121742307 1 + C T rs13008360 121742308 + 121742288 121742328 41 ACGTCAGAGCCATCAAGACCGAGAGCTCCGGGGTAAGCGGA ACGTCAGAGCCATCAAGACTGAGAGCTCCGGGGTAAGCGGA < 41bp 0.531651623900794 0.732799132559917 NA NA prediction 0.402295017318245 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121742308 chr2:121742307 synonymous SNV . 0 20 hm7G_associated_SNPs_37585 2 0 0 0 1 GLI2 chr2:121742319 5'GT 121742319 Upstream 13bp 34589 chr18 77208837 77208837 1 + C T rs146472413 77208838 + 77208818 77208858 41 CAGCTTTTCATTGGGACGGCGGACGACCGCCTGCTGCGCCC CAGCTTTTCATTGGGACGGTGGACGACCGCCTGCTGCGCCC < 41bp 0.548191308045216 0.749338031872822 NA NA prediction 0.402293447655212 Functional Gain - NFATC1 ENSG00000131196 CDS Human protein_coding chr18:77208838 chr18:77208837 nonsynonymous SNV 0.156 4 20 hm7G_associated_SNPs_37586 0 0 0 0 1 NFATC1 chr18:77208782 3'AG 77208782 Downstream 56bp 34590 chr17 7157978 7157978 1 + G A UCEC 7157979 + 7157959 7157999 41 CTTTCCTGGGGGGCCGCTGGGAGCCTTGAGAGCCATGTGCA CTTTCCTGGGGGGCCGCTGAGAGCCTTGAGAGCCATGTGCA < 41bp 0.542563412181113 0.743710107639178 NA NA prediction 0.40229339091613 Functional Gain - ELP5 ENSG00000170291 CDS Human protein_coding chr17:7157979 chr17:7157978 nonsynonymous SNV 0.659 1 20 hm7G_associated_SNPs_37587 0 0 1 0 1 ELP5 chr17:7157902 3'AG 7157902 Downstream 77bp 34591 chr16 83994191 83994191 1 + C T GBM 83994192 + 83994172 83994212 41 AGGACCTGGACTACCTGTCCGAAGGCCTCGAAGGCCGATCC AGGACCTGGACTACCTGTCTGAAGGCCTCGAAGGCCGATCC < 41bp 0.537995763039344 0.739141794942988 NA NA prediction 0.402292063807288 Functional Gain - OSGIN1 ENSG00000140961 CDS Human protein_coding chr16:83994192 chr16:83994191 synonymous SNV . 0 20 hm7G_associated_SNPs_37588 0 0 1 0 1 OSGIN1 chr16:83994174 3'AG 83994174 Downstream 18bp 34592 chr5 156788522 156788522 1 + C T UCEC 156788523 + 156788503 156788543 41 TGAAGGACATCATTGAGTACGCAGAGCTCAAAACAGACGTG TGAAGGACATCATTGAGTATGCAGAGCTCAAAACAGACGTG < 41bp 0.550491593250515 0.751636427316881 NA NA prediction 0.402289668132731 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156788523 chr5:156788522 synonymous SNV . 0 20 hm7G_associated_SNPs_37589 0 0 0 0 2 CYFIP2 chr5:156788476 3'AG 156788476 Downstream 47bp 34593 chr5 156788522 156788522 1 + C T UCEC 156788523 + 156788503 156788543 41 TGAAGGACATCATTGAGTACGCAGAGCTCAAAACAGACGTG TGAAGGACATCATTGAGTATGCAGAGCTCAAAACAGACGTG < 41bp 0.550491593250515 0.751636427316881 NA NA prediction 0.402289668132731 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156788523 chr5:156788522 synonymous SNV . 0 20 hm7G_associated_SNPs_37589 0 0 0 0 2 CYFIP2 chr5:156788606 5'GT 156788606 Upstream 85bp 34594 chr16 842801 842801 1 + G A rs545506439 842802 + 842782 842822 41 CCCTCGAGGCTGGTGCAGCGGCTCCAGGAGGTCGGTGGAGC CCCTCGAGGCTGGTGCAGCAGCTCCAGGAGGTCGGTGGAGC < 41bp 0.588135578776848 0.789280285656917 NA NA prediction 0.402289413760137 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842802 chr16:842801 nonsynonymous SNV 0.364 3 20 hm7G_associated_SNPs_37590 0 0 1 0 2 CHTF18 chr16:842718 3'AG 842718 Downstream 84bp 34595 chr16 842801 842801 1 + G A rs545506439 842802 + 842782 842822 41 CCCTCGAGGCTGGTGCAGCGGCTCCAGGAGGTCGGTGGAGC CCCTCGAGGCTGGTGCAGCAGCTCCAGGAGGTCGGTGGAGC < 41bp 0.588135578776848 0.789280285656917 NA NA prediction 0.402289413760137 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:842802 chr16:842801 nonsynonymous SNV 0.364 3 20 hm7G_associated_SNPs_37590 0 0 1 0 2 CHTF18 chr16:842811 5'GT 842811 Upstream 11bp 34596 chr15 89415268 89415268 1 + C T GBM 89415269 + 89415249 89415289 41 ACCAGTGGATCGGCCTGAACGACAGGACCATCGAAGGGGAC ACCAGTGGATCGGCCTGAATGACAGGACCATCGAAGGGGAC < 41bp 0.527601287863103 0.728744456967848 NA NA prediction 0.402286338209491 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89415269 chr15:89415268 synonymous SNV . 0 20 hm7G_associated_SNPs_37592 0 0 0 0 2 ACAN chr15:89415234 3'AG 89415234 Downstream 35bp 34597 chr15 89415268 89415268 1 + C T GBM 89415269 + 89415249 89415289 41 ACCAGTGGATCGGCCTGAACGACAGGACCATCGAAGGGGAC ACCAGTGGATCGGCCTGAATGACAGGACCATCGAAGGGGAC < 41bp 0.527601287863103 0.728744456967848 NA NA prediction 0.402286338209491 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89415269 chr15:89415268 synonymous SNV . 0 20 hm7G_associated_SNPs_37592 0 0 0 0 2 ACAN chr15:89415316 5'GT 89415316 Upstream 49bp 34598 chr7 150737962 150737962 1 + C T STAD 150737963 + 150737943 150737983 41 CTGAAAGACTTCACCCTGACGCTGCCCCCTGGCAAGATCGT CTGAAAGACTTCACCCTGATGCTGCCCCCTGGCAAGATCGT < 41bp 0.548581445348742 0.749723638379034 NA NA prediction 0.402284386060583 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737963 chr7:150737962 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_37593 0 0 0 0 2 ABCB8 chr7:150737915 3'AG 150737915 Downstream 48bp 34599 chr7 150737962 150737962 1 + C T STAD 150737963 + 150737943 150737983 41 CTGAAAGACTTCACCCTGACGCTGCCCCCTGGCAAGATCGT CTGAAAGACTTCACCCTGATGCTGCCCCCTGGCAAGATCGT < 41bp 0.548581445348742 0.749723638379034 NA NA prediction 0.402284386060583 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150737963 chr7:150737962 nonsynonymous SNV 0.996 1 20 hm7G_associated_SNPs_37593 0 0 0 0 2 ABCB8 chr7:150738009 5'GT 150738009 Upstream 48bp 34600 chr11 70208264 70208264 1 + G A LGG 70208265 + 70208245 70208285 41 CCCAATGGGACGGGCCAACGGTTGTGGTCTGGCTAGAGGTA CCCAATGGGACGGGCCAACAGTTGTGGTCTGGCTAGAGGTA < 41bp 0.512562582696453 0.713704691957007 NA NA prediction 0.402284218521108 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70208265 chr11:70208264 synonymous SNV . 0 20 hm7G_associated_SNPs_37594 0 0 1 0 1 PPFIA1 chr11:70208282 5'GT 70208282 Upstream 19bp 34601 chr2 152314404 152314404 1 + C T COAD 152314405 + 152314385 152314425 41 GCACAAGAATAAACAGATTCGAAAACAGAGTGCTCAGTTCT GCACAAGAATAAACAGATTTGAAAACAGAGTGCTCAGTTCT < 41bp 0.517406777992099 0.718546540816226 NA NA prediction 0.402279525648254 Functional Gain - RIF1 ENSG00000080345 CDS Human protein_coding chr2:152314405 chr2:152314404 stopgain 0.994 1 20 hm7G_associated_SNPs_37595 0 0 1 0 1 RIF1 chr2:152314477 5'GT 152314477 Upstream 74bp 34602 chr17 74465773 74465773 1 + G A SKCM 74465774 + 74465754 74465794 41 TGACGCTGCACAGGTCTGGGGGCCACATAGCCCACCTGCAT TGACGCTGCACAGGTCTGGAGGCCACATAGCCCACCTGCAT < 41bp 0.577743995542676 0.77888331264453 NA NA prediction 0.402278634203708 Functional Gain - AANAT ENSG00000129673 CDS Human protein_coding chr17:74465774 chr17:74465773 synonymous SNV . 0 20 hm7G_associated_SNPs_37597 0 0 0 1 1 AANAT chr17:74465747 3'AG 74465747 Downstream 27bp 34603 chr14 61449339 61449339 1 + C T UCEC 61449340 + 61449320 61449360 41 CTTATGTTTTGGCTAATACCGGTGTCTTTGGATTTAGGTGA CTTATGTTTTGGCTAATACTGGTGTCTTTGGATTTAGGTGA < 41bp 0.516990012151272 0.718128573640006 NA NA prediction 0.402277122977468 Functional Gain - SLC38A6 ENSG00000139974 CDS Human protein_coding chr14:61449340 chr14:61449339 synonymous SNV . 0 20 hm7G_associated_SNPs_37598 0 0 0 0 1 SLC38A6 chr14:61449356 5'GT 61449356 Upstream 18bp 34604 chr1 17273320 17273320 1 + C T UCEC 17273321 + 17273301 17273341 41 GAGCAGGAGGCCACAGTGGCGCGGGAAGAGCAGGAACGGCT GAGCAGGAGGCCACAGTGGTGCGGGAAGAGCAGGAACGGCT < 41bp 0.53091643116179 0.732054693806247 NA NA prediction 0.402276525288914 Functional Gain - CROCC ENSG00000058453 CDS Human protein_coding chr1:17273321 chr1:17273320 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_37599 0 0 0 0 1 CROCC chr1:17273256 3'AG 17273256 Downstream 65bp 34605 chr11 66240744 66240744 1 + C T OV 66240745 + 66240725 66240765 41 CAGAGAACATGATTGACTTCGTGGTAACAGACACGTCCCCT CAGAGAACATGATTGACTTTGTGGTAACAGACACGTCCCCT < 41bp 0.495587433021194 0.701134954086015 NA NA prediction 0.40226990817203 Functional Gain - PELI3 ENSG00000174516 CDS Human protein_coding chr11:66240745 chr11:66240744 synonymous SNV . 0 20 hm7G_associated_SNPs_37603 0 0 0 0 1 PELI3 chr11:66240712 3'AG 66240712 Downstream 33bp 34606 chr6 155095157 155095157 1 + C T UCEC 155095158 + 155095138 155095178 41 GACTATAAACCACCCATTTCGAAAGCGAAAATGACCCAAAT GACTATAAACCACCCATTTTGAAAGCGAAAATGACCCAAAT < 41bp 0.541184013308863 0.74231857393496 NA NA prediction 0.402269121252194 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155095158 chr6:155095157 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37604 0 0 1 0 2 SCAF8 chr6:155095123 3'AG 155095123 Downstream 35bp 34607 chr6 155095157 155095157 1 + C T UCEC 155095158 + 155095138 155095178 41 GACTATAAACCACCCATTTCGAAAGCGAAAATGACCCAAAT GACTATAAACCACCCATTTTGAAAGCGAAAATGACCCAAAT < 41bp 0.541184013308863 0.74231857393496 NA NA prediction 0.402269121252194 Functional Gain - SCAF8 ENSG00000213079 CDS Human protein_coding chr6:155095158 chr6:155095157 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37604 0 0 1 0 2 SCAF8 chr6:155095206 5'GT 155095206 Upstream 50bp 34608 chr6 26373289 26373289 1 + G A COAD 26373290 + 26373270 26373310 41 GCAAGAGATGAAAGAAATGGGATATGCTGCAACAGAGCGGG GCAAGAGATGAAAGAAATGAGATATGCTGCAACAGAGCGGG < 41bp 0.499508350863212 0.701132696193655 NA NA prediction 0.402265392387311 Functional Gain - BTN3A2 ENSG00000186470 CDS Human protein_coding chr6:26373290 chr6:26373289 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_37606 0 0 1 0 1 BTN3A2 chr6:26373325 5'GT 26373325 Upstream 37bp 34609 chr10 126673377 126673377 1 + G T SARC 126673378 + 126673358 126673398 41 CAGCAAGAAAAACTGCTCAGGGAGTGGCTGGACTGCTGTGT CAGCAAGAAAAACTGCTCATGGAGTGGCTGGACTGCTGTGT < 41bp 0.699108841085726 0.900240965363165 NA NA prediction 0.402264248554876 Functional Gain - ZRANB1 ENSG00000019995 CDS Human protein_coding chr10:126673378 chr10:126673377 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37608 0 0 1 0 1 ZRANB1 chr10:126673343 3'AG 126673343 Downstream 35bp 34610 chr19 55145459 55145459 1 + G A COAD 55145460 + 55145440 55145480 41 CCCTCACCCCCACCGGGTCGGATCCCCAGAGTGGTGAGTGA CCCTCACCCCCACCGGGTCAGATCCCCAGAGTGGTGAGTGA < 41bp 0.483409787009707 0.701131849197493 NA NA prediction 0.402263698394987 Functional Gain - LILRB1 ENSG00000104972 CDS Human protein_coding chr19:55145460 chr19:55145459 synonymous SNV . 0 20 hm7G_associated_SNPs_37609 0 0 0 0 3 LILRB1 chr19:55145422 3'AG 55145422 Downstream 38bp 34611 chr19 55145459 55145459 1 + G A COAD 55145460 + 55145440 55145480 41 CCCTCACCCCCACCGGGTCGGATCCCCAGAGTGGTGAGTGA CCCTCACCCCCACCGGGTCAGATCCCCAGAGTGGTGAGTGA < 41bp 0.483409787009707 0.701131849197493 NA NA prediction 0.402263698394987 Functional Gain - LILRB1 ENSG00000104972 CDS Human protein_coding chr19:55145460 chr19:55145459 synonymous SNV . 0 20 hm7G_associated_SNPs_37609 0 0 0 0 3 LILRB1 chr19:55145425 3'AG 55145425 Downstream 35bp 34612 chr19 55145459 55145459 1 + G A COAD 55145460 + 55145440 55145480 41 CCCTCACCCCCACCGGGTCGGATCCCCAGAGTGGTGAGTGA CCCTCACCCCCACCGGGTCAGATCCCCAGAGTGGTGAGTGA < 41bp 0.483409787009707 0.701131849197493 NA NA prediction 0.402263698394987 Functional Gain - LILRB1 ENSG00000104972 CDS Human protein_coding chr19:55145460 chr19:55145459 synonymous SNV . 0 20 hm7G_associated_SNPs_37609 0 0 0 0 3 LILRB1 chr19:55145472 5'GT 55145472 Upstream 14bp 34613 chr2 11913844 11913844 1 + C T rs568970987 11913845 + 11913825 11913865 41 TCAGCCTCATACCCTAATTCGGATAGAGAGTGGTCACCCAC TCAGCCTCATACCCTAATTTGGATAGAGAGTGGTCACCCAC < 41bp 0.559099748651327 0.760230933515375 NA NA prediction 0.402262369728094 Functional Gain - LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11913845 chr2:11913844 nonsynonymous SNV 0.818 5 20 hm7G_associated_SNPs_37610 1 0 1 0 2 LPIN1 chr2:11913746 3'AG 11913746 Downstream 99bp 34614 chr2 11913844 11913844 1 + C T rs568970987 11913845 + 11913825 11913865 41 TCAGCCTCATACCCTAATTCGGATAGAGAGTGGTCACCCAC TCAGCCTCATACCCTAATTTGGATAGAGAGTGGTCACCCAC < 41bp 0.559099748651327 0.760230933515375 NA NA prediction 0.402262369728094 Functional Gain - LPIN1 ENSG00000134324 CDS Human protein_coding chr2:11913845 chr2:11913844 nonsynonymous SNV 0.818 5 20 hm7G_associated_SNPs_37610 1 0 1 0 2 LPIN1 chr2:11913871 5'GT 11913871 Upstream 28bp 34615 chr8 27970632 27970632 1 + C T GBM 27970633 + 27970613 27970653 41 ATACAGAGATTATTTTATTCGAAATTTACATGATGCCTTAT ATACAGAGATTATTTTATTTGAAATTTACATGATGCCTTAT < 41bp 0.538293118059812 0.739423613824174 NA NA prediction 0.402260991528725 Functional Gain - ELP3 ENSG00000134014 CDS Human protein_coding chr8:27970633 chr8:27970632 stopgain 1.000 1 20 hm7G_associated_SNPs_37611 0 0 1 0 2 ELP3 chr8:27970536 3'AG 27970536 Downstream 97bp 34616 chr8 27970632 27970632 1 + C T GBM 27970633 + 27970613 27970653 41 ATACAGAGATTATTTTATTCGAAATTTACATGATGCCTTAT ATACAGAGATTATTTTATTTGAAATTTACATGATGCCTTAT < 41bp 0.538293118059812 0.739423613824174 NA NA prediction 0.402260991528725 Functional Gain - ELP3 ENSG00000134014 CDS Human protein_coding chr8:27970633 chr8:27970632 stopgain 1.000 1 20 hm7G_associated_SNPs_37611 0 0 1 0 2 ELP3 chr8:27970690 5'GT 27970690 Upstream 59bp 34617 chr8 125029939 125029939 1 + C T STAD 125029940 + 125029920 125029960 41 TTAGATAAGAAGCGACTTACGCTCTGCTGGCAGGAGCTGGT TTAGATAAGAAGCGACTTATGCTCTGCTGGCAGGAGCTGGT < 41bp 0.514716476231839 0.715846295873674 NA NA prediction 0.40225963928367 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125029940 chr8:125029939 nonsynonymous SNV 0.762 1 20 hm7G_associated_SNPs_37612 0 0 0 0 2 FER1L6 chr8:125029868 3'AG 125029868 Downstream 72bp 34618 chr8 125029939 125029939 1 + C T STAD 125029940 + 125029920 125029960 41 TTAGATAAGAAGCGACTTACGCTCTGCTGGCAGGAGCTGGT TTAGATAAGAAGCGACTTATGCTCTGCTGGCAGGAGCTGGT < 41bp 0.514716476231839 0.715846295873674 NA NA prediction 0.40225963928367 Functional Gain - FER1L6 ENSG00000214814 CDS Human protein_coding chr8:125029940 chr8:125029939 nonsynonymous SNV 0.762 1 20 hm7G_associated_SNPs_37612 0 0 0 0 2 FER1L6 chr8:125029958 5'GT 125029958 Upstream 20bp 34619 chr10 127429190 127429190 1 + C T UCEC 127429191 + 127429171 127429211 41 GAAATACGGAAGAGCATTACGATACATTAAATTAGCTTTGC GAAATACGGAAGAGCATTATGATACATTAAATTAGCTTTGC < 41bp 0.539602211699942 0.740729657217682 NA NA prediction 0.40225489103548 Functional Gain - EDRF1 ENSG00000107938 CDS Human protein_coding chr10:127429191 chr10:127429190 stopgain 0.953 1 20 hm7G_associated_SNPs_37614 0 0 1 0 1 EDRF1 chr10:127429220 5'GT 127429220 Upstream 31bp 34620 chr9 131762062 131762062 1 + G A STAD 131762063 + 131762043 131762083 41 GACGACTGTTCTCGGTCCCGGCACAGGGACCAGCGTGATGG GACGACTGTTCTCGGTCCCAGCACAGGGACCAGCGTGATGG < 41bp 0.527168309445565 0.728294116053366 NA NA prediction 0.402251613215601 Functional Gain - NUP188 ENSG00000095319 CDS Human protein_coding chr9:131762063 chr9:131762062 nonsynonymous SNV 0.994 0 20 hm7G_associated_SNPs_37615 0 0 1 0 1 NUP188 chr9:131762084 5'GT 131762084 Upstream 23bp 34621 chr19 55889216 55889216 1 + C T COAD 55889217 + 55889197 55889237 41 CGCTGGTCTGGACGTGCAGCGGCCTCCTCCTCCTGAGCTGC CGCTGGTCTGGACGTGCAGTGGCCTCCTCCTCCTGAGCTGC < 41bp 0.501524641717123 0.702646890074766 NA NA prediction 0.402244496715287 Functional Gain - TMEM190 ENSG00000160472 CDS Human protein_coding chr19:55889217 chr19:55889216 synonymous SNV . 0 20 hm7G_associated_SNPs_37616 0 0 0 0 1 TMEM190 chr19:55889170 3'AG 55889170 Downstream 47bp 34622 chr7 101176401 101176401 1 + C T COAD 101176402 + 101176382 101176422 41 GCTCAGTGACATGAGTGAGCGACTGACCACACTGGAGGCCA GCTCAGTGACATGAGTGAGTGACTGACCACACTGGAGGCCA < 41bp 0.509802638587828 0.710924233319914 NA NA prediction 0.402243189464171 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101176402 chr7:101176401 stopgain 0.998 0 20 hm7G_associated_SNPs_37617 0 0 0 0 2 COL26A1 chr7:101176363 3'AG 101176363 Downstream 39bp 34623 chr7 101176401 101176401 1 + C T COAD 101176402 + 101176382 101176422 41 GCTCAGTGACATGAGTGAGCGACTGACCACACTGGAGGCCA GCTCAGTGACATGAGTGAGTGACTGACCACACTGGAGGCCA < 41bp 0.509802638587828 0.710924233319914 NA NA prediction 0.402243189464171 Functional Gain - COL26A1 ENSG00000160963 CDS Human protein_coding chr7:101176402 chr7:101176401 stopgain 0.998 0 20 hm7G_associated_SNPs_37617 0 0 0 0 2 COL26A1 chr7:101176424 5'GT 101176424 Upstream 24bp 34624 chr19 17322560 17322560 1 + G A rs201759976 17322561 + 17322541 17322581 41 GAGAGCCTGCTGGAGGAGCGGGCCGGGCGGGGGGCCTCGGA GAGAGCCTGCTGGAGGAGCAGGCCGGGCGGGGGGCCTCGGA < 41bp 0.551117840861666 0.752237441741315 NA NA prediction 0.402239201759298 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322561 chr19:17322560 nonsynonymous SNV 0.888 5 20 hm7G_associated_SNPs_37618 0 0 1 0 2 MYO9B chr19:17322583 5'GT 17322583 Upstream 24bp 34625 chr19 17322560 17322560 1 + G A rs201759976 17322561 + 17322541 17322581 41 GAGAGCCTGCTGGAGGAGCGGGCCGGGCGGGGGGCCTCGGA GAGAGCCTGCTGGAGGAGCAGGCCGGGCGGGGGGCCTCGGA < 41bp 0.551117840861666 0.752237441741315 NA NA prediction 0.402239201759298 Functional Gain - MYO9B ENSG00000099331 CDS Human protein_coding chr19:17322561 chr19:17322560 nonsynonymous SNV 0.888 5 20 hm7G_associated_SNPs_37618 0 0 1 0 2 MYO9B chr19:17322595 5'GT 17322595 Upstream 36bp 34626 chr9 130485557 130485557 1 + C T UCEC 130485558 + 130485538 130485578 41 GCTGCAGCACGCACTGCAGCGGATCAACCGTGCCATCGAGA GCTGCAGCACGCACTGCAGTGGATCAACCGTGCCATCGAGA < 41bp 0.557866375349144 0.758984161795868 NA NA prediction 0.402235572893448 Functional Gain - TTC16 ENSG00000167094 CDS Human protein_coding chr9:130485558 chr9:130485557 nonsynonymous SNV 0.505 1 20 hm7G_associated_SNPs_37620 0 0 0 0 1 TTC16 chr9:130485612 5'GT 130485612 Upstream 56bp 34627 chr6 158492670 158492670 1 + G A LUAD 158492671 + 158492651 158492691 41 CAGTGAAGACGGGCATGGGGGGCAAGGCGGGGAACAAGGGC CAGTGAAGACGGGCATGGGAGGCAAGGCGGGGAACAAGGGC < 41bp 0.567386050437936 0.768503070808868 NA NA prediction 0.402234040741864 Functional Gain - SYNJ2 ENSG00000078269 CDS Human protein_coding chr6:158492671 chr6:158492670 synonymous SNV . 0 20 hm7G_associated_SNPs_37621 0 0 1 0 1 SYNJ2 chr6:158492634 3'AG 158492634 Downstream 37bp 34628 chr19 46815864 46815864 1 + C T LGG 46815865 + 46815845 46815885 41 CACAGTGGTGTCAGGGGGACGGGGCCCCCAGTCGGAGAGTA CACAGTGGTGTCAGGGGGATGGGGCCCCCAGTCGGAGAGTA < 41bp 0.566149521899107 0.767265852558926 NA NA prediction 0.402232661319639 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46815865 chr19:46815864 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_37622 0 0 0 0 1 HIF3A chr19:46815910 5'GT 46815910 Upstream 47bp 34629 chr1 210012290 210012290 1 + C T BLCA 210012291 + 210012271 210012311 41 ATTCCGGGAAGCTGCTTTGCGGGTGGTGCAGCTCTTCATCA ATTCCGGGAAGCTGCTTTGTGGGTGGTGCAGCTCTTCATCA < 41bp 0.544798459912052 0.745914719730081 NA NA prediction 0.402232519636058 Functional Gain - DIEXF ENSG00000117597 CDS Human protein_coding chr1:210012291 chr1:210012290 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_37623 0 0 0 0 1 DIEXF chr1:210012254 3'AG 210012254 Downstream 37bp 34630 chr20 34526674 34526674 1 + G T LUAD 34526675 + 34526655 34526695 41 GCCTTGGAAACAGCACTCAGGGGAGGGGAGATCTCATTTCA GCCTTGGAAACAGCACTCATGGGAGGGGAGATCTCATTTCA < 41bp 0.353345216652237 0.701115829553849 NA NA prediction 0.402231659107698 Functional Gain - PHF20 ENSG00000025293 CDS Human protein_coding chr20:34526675 chr20:34526674 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_37625 0 0 1 0 1 PHF20 chr20:34526619 3'AG 34526619 Downstream 56bp 34631 chr17 78172351 78172351 1 + G A CESC 78172352 + 78172332 78172372 41 TCACCCCGGGCTCGGCGGCGGACCAGATGGCCTTGCGCCCG TCACCCCGGGCTCGGCGGCAGACCAGATGGCCTTGCGCCCG < 41bp 0.494503266137886 0.701115206498331 NA NA prediction 0.402230412996662 Functional Gain - CARD14 ENSG00000141527 CDS Human protein_coding chr17:78172352 chr17:78172351 synonymous SNV . 0 20 hm7G_associated_SNPs_37626 0 0 0 0 1 CARD14 chr17:78172390 5'GT 78172390 Upstream 40bp 34632 chr2 99149894 99149894 1 + C T OV 99149895 + 99149875 99149915 41 AAGCCAAATAGTTTTGTTGCGGTGAGTGTCACCACCCCTCC AAGCCAAATAGTTTTGTTGTGGTGAGTGTCACCACCCCTCC < 41bp 0.55843560728759 0.759548668943706 NA NA prediction 0.40222612331223 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99149895 chr2:99149894 nonsynonymous SNV 0.975 2 20 hm7G_associated_SNPs_37628 0 0 0 0 2 INPP4A chr2:99149840 3'AG 99149840 Downstream 55bp 34633 chr2 99149894 99149894 1 + C T OV 99149895 + 99149875 99149915 41 AAGCCAAATAGTTTTGTTGCGGTGAGTGTCACCACCCCTCC AAGCCAAATAGTTTTGTTGTGGTGAGTGTCACCACCCCTCC < 41bp 0.55843560728759 0.759548668943706 NA NA prediction 0.40222612331223 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99149895 chr2:99149894 nonsynonymous SNV 0.975 2 20 hm7G_associated_SNPs_37628 0 0 0 0 2 INPP4A chr2:99149958 5'GT 99149958 Upstream 65bp 34634 chr6 108984700 108984700 1 + C T STAD 108984701 + 108984681 108984721 41 ACTGCATAGTCGATTCATGCGGGTCCAGAATGAGGGAACTG ACTGCATAGTCGATTCATGTGGGTCCAGAATGAGGGAACTG < 41bp 0.557888347724104 0.75899729538952 NA NA prediction 0.402217895330831 Functional Gain - FOXO3 ENSG00000118689 CDS Human protein_coding chr6:108984701 chr6:108984700 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_37635 0 0 0 0 1 FOXO3 chr6:108984658 3'AG 108984658 Downstream 43bp 34635 chr15 71256270 71256270 1 + C T STAD 71256271 + 71256251 71256291 41 CTAGATATGAAGAGAATCACGGTGAGAACCCTTCCAAAGTG CTAGATATGAAGAGAATCATGGTGAGAACCCTTCCAAAGTG < 41bp 0.490585644075586 0.701108720094811 NA NA prediction 0.402217440189622 Functional Gain - LRRC49 ENSG00000137821 CDS Human protein_coding chr15:71256271 chr15:71256270 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_37636 0 0 0 0 1 LRRC49 chr15:71256271 5'GT 71256271 Upstream 2bp 34636 chr17 40815057 40815057 1 + C T COAD 40815058 + 40815038 40815078 41 GGGCTCCTACCTCCTGGAGCGACTGAATGACAGGCAAGCCT GGGCTCCTACCTCCTGGAGTGACTGAATGACAGGCAAGCCT < 41bp 0.530574693393724 0.731683182898743 NA NA prediction 0.402216979010038 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40815058 chr17:40815057 stopgain 0.990 1 20 hm7G_associated_SNPs_37637 0 0 0 0 1 TUBG2 chr17:40814991 3'AG 40814991 Downstream 67bp 34637 chr11 68207255 68207255 1 + C T CESC 68207256 + 68207236 68207276 41 CCCTGCCAGGCATCGCATGCGGAAAGTCCATGATGAGCTCC CCCTGCCAGGCATCGCATGTGGAAAGTCCATGATGAGCTCC < 41bp 0.493606725383134 0.701106658742116 NA NA prediction 0.402213317484232 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68207256 chr11:68207255 synonymous SNV . 0 20 hm7G_associated_SNPs_37638 1 0 1 0 1 LRP5 chr11:68207245 3'AG 68207245 Downstream 11bp 34638 chr7 5338693 5338693 1 + C T rs11761173 5338694 + 5338674 5338714 41 ACGAGGTGACCGGCAGCGGCGGGGCCTACATGCGCTTTGAT ACGAGGTGACCGGCAGCGGTGGGGCCTACATGCGCTTTGAT < 41bp 0.548097172841949 0.749202900886298 NA NA prediction 0.402211456088697 Functional Gain - SLC29A4 ENSG00000164638 CDS Human protein_coding chr7:5338694 chr7:5338693 synonymous SNV . 0 20 hm7G_associated_SNPs_37639 0 0 0 0 1 SLC29A4 chr7:5338619 3'AG 5338619 Downstream 75bp 34639 chr5 154173815 154173815 1 + C T UCEC 154173816 + 154173796 154173836 41 GCTCAAAGACTACATCAAGCGCCAGATGTGAGTGTGCGGAA GCTCAAAGACTACATCAAGTGCCAGATGTGAGTGTGCGGAA < 41bp 0.559019559882167 0.760123195528958 NA NA prediction 0.40220727129358 Functional Gain - LARP1 ENSG00000155506 CDS Human protein_coding chr5:154173816 chr5:154173815 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37640 0 0 1 0 1 LARP1 chr5:154173822 5'GT 154173822 Upstream 8bp 34640 chrX 15540482 15540482 1 + G T THCA 15540483 + 15540463 15540503 41 CCAAAGCTGAAGATACCTCGGGCAGTTCCTGTTCTCAAAAT CCAAAGCTGAAGATACCTCTGGCAGTTCCTGTTCTCAAAAT < 41bp 0.356510505247028 0.701101743814212 NA NA prediction 0.402203487628425 Functional Gain - BMX ENSG00000102010 CDS Human protein_coding chrX:15540483 chrX:15540482 nonsynonymous SNV 0.995 0 20 hm7G_associated_SNPs_37642 0 0 0 0 1 BMX chrX:15540469 3'AG 15540469 Downstream 14bp 34641 chr16 85948094 85948094 1 + C T COAD 85948095 + 85948075 85948115 41 GCAGGCGTGCCGCTGGTGACGGGGTACACCACCTACGACGC GCAGGCGTGCCGCTGGTGATGGGGTACACCACCTACGACGC < 41bp 0.545540172791238 0.746641389780576 NA NA prediction 0.402202433978677 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85948095 chr16:85948094 nonsynonymous SNV 0.086 1 20 hm7G_associated_SNPs_37643 0 0 0 0 2 IRF8 chr16:85948079 3'AG 85948079 Downstream 16bp 34642 chr16 85948094 85948094 1 + C T COAD 85948095 + 85948075 85948115 41 GCAGGCGTGCCGCTGGTGACGGGGTACACCACCTACGACGC GCAGGCGTGCCGCTGGTGATGGGGTACACCACCTACGACGC < 41bp 0.545540172791238 0.746641389780576 NA NA prediction 0.402202433978677 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85948095 chr16:85948094 nonsynonymous SNV 0.086 1 20 hm7G_associated_SNPs_37643 0 0 0 0 2 IRF8 chr16:85948126 5'GT 85948126 Upstream 33bp 34643 chr19 56005181 56005181 1 + G A COAD 56005182 + 56005162 56005202 41 ATCATCCTGGACGACCTTCGGTGTCGGGGAAACGAGACGGC ATCATCCTGGACGACCTTCAGTGTCGGGGAAACGAGACGGC < 41bp 0.479828098431288 0.701100736597506 NA NA prediction 0.402201473195012 Functional Gain - SSC5D ENSG00000179954 CDS Human protein_coding chr19:56005182 chr19:56005181 nonsynonymous SNV 0.071 2 20 hm7G_associated_SNPs_37644 0 0 0 0 1 SSC5D chr19:56005279 5'GT 56005279 Upstream 99bp 34644 chr9 139231484 139231484 1 + C T KICH 139231485 + 139231465 139231505 41 CAGGACCCCGGGCACCTGCCGCCCGATGTCCGAGAGACCCT CAGGACCCCGGGCACCTGCTGCCCGATGTCCGAGAGACCCT < 41bp 0.486327440796601 0.701098803635317 NA NA prediction 0.402197607270633 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139231485 chr9:139231484 nonsynonymous SNV 0.801 3 20 hm7G_associated_SNPs_37646 0 0 0 0 1 GPSM1 chr9:139231529 5'GT 139231529 Upstream 46bp 34645 chr7 66482878 66482878 1 + C T LAML 66482879 + 66482859 66482899 41 AGTGGCTCTGGATGCTTGGCGCGCATCGTGTGATGAGTCGA AGTGGCTCTGGATGCTTGGTGCGCATCGTGTGATGAGTCGA < 41bp 0.538374974947833 0.739472994625558 NA NA prediction 0.402196039355448 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66482879 chr7:66482878 synonymous SNV . 0 20 hm7G_associated_SNPs_37647 0 0 1 0 1 TYW1 chr7:66482840 3'AG 66482840 Downstream 39bp 34646 chr19 55591523 55591523 1 + C T CESC 55591524 + 55591504 55591544 41 TGGAGTCGTACCCACTGGGCGCCATCGTGCGCTGTGACGCG TGGAGTCGTACCCACTGGGTGCCATCGTGCGCTGTGACGCG < 41bp 0.511626846378395 0.712724470984759 NA NA prediction 0.402195249212729 Functional Gain - EPS8L1 ENSG00000131037 CDS Human protein_coding chr19:55591524 chr19:55591523 synonymous SNV . 0 20 hm7G_associated_SNPs_37648 0 0 0 0 1 EPS8L1 chr19:55591497 3'AG 55591497 Downstream 27bp 34647 chr17 61770978 61770978 1 + C T STAD 61770979 + 61770959 61770999 41 CAGAGTATGAAGCTATGGCCGCCATCTTCAAGATTGCCACC CAGAGTATGAAGCTATGGCTGCCATCTTCAAGATTGCCACC < 41bp 0.515833454837591 0.716930256186259 NA NA prediction 0.402193602697335 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61770979 chr17:61770978 synonymous SNV . 0 20 hm7G_associated_SNPs_37649 0 0 0 0 1 MAP3K3 chr17:61770909 3'AG 61770909 Downstream 70bp 34648 chr17 7290739 7290739 1 + G A SKCM 7290740 + 7290720 7290760 41 GGGATGCGCCCCCAGCACGGGGCCAGAGGAGGAACATGCCC GGGATGCGCCCCCAGCACGAGGCCAGAGGAGGAACATGCCC < 41bp 0.588376057562879 0.789472779012035 NA NA prediction 0.402193442898312 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290740 chr17:7290739 nonsynonymous SNV 0.128 0 20 hm7G_associated_SNPs_37650 0 0 0 0 2 TNK1 chr17:7290697 3'AG 7290697 Downstream 43bp 34649 chr17 7290739 7290739 1 + G A SKCM 7290740 + 7290720 7290760 41 GGGATGCGCCCCCAGCACGGGGCCAGAGGAGGAACATGCCC GGGATGCGCCCCCAGCACGAGGCCAGAGGAGGAACATGCCC < 41bp 0.588376057562879 0.789472779012035 NA NA prediction 0.402193442898312 Functional Gain - TNK1 ENSG00000174292 CDS Human protein_coding chr17:7290740 chr17:7290739 nonsynonymous SNV 0.128 0 20 hm7G_associated_SNPs_37650 0 0 0 0 2 TNK1 chr17:7290776 5'GT 7290776 Upstream 38bp 34650 chr17 39969497 39969497 1 + G A UCEC 39969498 + 39969478 39969518 41 TGTGCGCTACCACTACAACGGCACTTTTGAAGATGGCAAGA TGTGCGCTACCACTACAACAGCACTTTTGAAGATGGCAAGA < 41bp 0.549917040776599 0.751012790850255 NA NA prediction 0.402191500147312 Functional Gain - FKBP10 ENSG00000141756 CDS Human protein_coding chr17:39969498 chr17:39969497 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_37651 0 0 1 0 1 FKBP10 chr17:39969531 5'GT 39969531 Upstream 35bp 34651 chr11 116701499 116701499 1 + G A SKCM 116701500 + 116701480 116701520 41 TTTCCTCAGGAGCTTCAGAGGCCGAGGATGCCTCCCTTCTC TTTCCTCAGGAGCTTCAGAAGCCGAGGATGCCTCCCTTCTC < 41bp 0.559474537367746 0.760566237900921 NA NA prediction 0.402183401066351 Functional Gain - APOC3 ENSG00000110245 CDS Human protein_coding chr11:116701500 chr11:116701499 synonymous SNV . 0 20 hm7G_associated_SNPs_37655 0 0 1 0 1 APOC3 chr11:116701489 3'AG 116701489 Downstream 11bp 34652 chr4 107258035 107258035 1 + C T UCEC 107258036 + 107258016 107258056 41 TTTCACACAGATGCAAAATCGGATGGTGATTTTACTTTGTA TTTCACACAGATGCAAAATTGGATGGTGATTTTACTTTGTA < 41bp 0.533532659054635 0.734623826750425 NA NA prediction 0.40218233539158 Functional Gain - AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107258036 chr4:107258035 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_37656 0 0 1 0 1 AIMP1 chr4:107258026 3'AG 107258026 Downstream 10bp 34653 chr19 41510037 41510037 1 + C T SKCM 41510038 + 41510018 41510058 41 TCTCTGGCCGGGGAAAAATCGCCATGGTCGACCCATTCTTC TCTCTGGCCGGGGAAAAATTGCCATGGTCGACCCATTCTTC < 41bp 0.524595979946021 0.725685545167309 NA NA prediction 0.402179130442576 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41510038 chr19:41510037 synonymous SNV . 0 20 hm7G_associated_SNPs_37657 0 0 0 0 1 CYP2B6 chr19:41510068 5'GT 41510068 Upstream 32bp 34654 chr19 5914613 5914613 1 + G A COAD 5914614 + 5914594 5914634 41 GGGACGGGAGCAGATCCCTGGACGCTGATGAGTTCCGGCAG GGGACGGGAGCAGATCCCTAGACGCTGATGAGTTCCGGCAG < 41bp 0.574661305076453 0.775749270337528 NA NA prediction 0.40217593052215 Functional Gain - CAPS ENSG00000105519 CDS Human protein_coding chr19:5914614 chr19:5914613 synonymous SNV . 0 20 hm7G_associated_SNPs_37658 0 0 0 0 1 CAPS chr19:5914574 3'AG 5914574 Downstream 40bp 34655 chr7 141764254 141764254 1 + C T COAD 141764255 + 141764235 141764275 41 GTCAGCAGATCCTCCCAGACGGCTCCCTGGTGCAGCACTAC GTCAGCAGATCCTCCCAGATGGCTCCCTGGTGCAGCACTAC < 41bp 0.522528266338494 0.723616208895279 NA NA prediction 0.40217588511357 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141764255 chr7:141764254 synonymous SNV . 0 20 hm7G_associated_SNPs_37659 0 0 0 0 2 MGAM chr7:141764184 3'AG 141764184 Downstream 71bp 34656 chr7 141764254 141764254 1 + C T COAD 141764255 + 141764235 141764275 41 GTCAGCAGATCCTCCCAGACGGCTCCCTGGTGCAGCACTAC GTCAGCAGATCCTCCCAGATGGCTCCCTGGTGCAGCACTAC < 41bp 0.522528266338494 0.723616208895279 NA NA prediction 0.40217588511357 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141764255 chr7:141764254 synonymous SNV . 0 20 hm7G_associated_SNPs_37659 0 0 0 0 2 MGAM chr7:141764322 5'GT 141764322 Upstream 69bp 34657 chr20 33567509 33567509 1 + C T CESC 33567510 + 33567490 33567530 41 GCAGCCCATGAACCCGCCTCGCTTCGACTTACTGGAGGACA GCAGCCCATGAACCCGCCTTGCTTCGACTTACTGGAGGACA < 41bp 0.487251498641307 0.701082897164562 NA NA prediction 0.402165794329124 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33567510 chr20:33567509 nonsynonymous SNV 0.895 2 20 hm7G_associated_SNPs_37661 0 0 0 0 2 MYH7B chr20:33567464 3'AG 33567464 Downstream 46bp 34658 chr20 33567509 33567509 1 + C T CESC 33567510 + 33567490 33567530 41 GCAGCCCATGAACCCGCCTCGCTTCGACTTACTGGAGGACA GCAGCCCATGAACCCGCCTTGCTTCGACTTACTGGAGGACA < 41bp 0.487251498641307 0.701082897164562 NA NA prediction 0.402165794329124 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33567510 chr20:33567509 nonsynonymous SNV 0.895 2 20 hm7G_associated_SNPs_37661 0 0 0 0 2 MYH7B chr20:33567607 5'GT 33567607 Upstream 99bp 34659 chr20 31827693 31827693 1 + C T READ 31827694 + 31827674 31827714 41 TCTATGTCACCATCCCTCTCGGCATAAAGCTCCAAGTGAAT TCTATGTCACCATCCCTCTTGGCATAAAGCTCCAAGTGAAT < 41bp 0.535445911535339 0.736528404439905 NA NA prediction 0.402164985809132 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31827694 chr20:31827693 synonymous SNV . 0 20 hm7G_associated_SNPs_37662 0 0 0 0 2 BPIFA1 chr20:31827609 3'AG 31827609 Downstream 85bp 34660 chr20 31827693 31827693 1 + C T READ 31827694 + 31827674 31827714 41 TCTATGTCACCATCCCTCTCGGCATAAAGCTCCAAGTGAAT TCTATGTCACCATCCCTCTTGGCATAAAGCTCCAAGTGAAT < 41bp 0.535445911535339 0.736528404439905 NA NA prediction 0.402164985809132 Functional Gain - BPIFA1 ENSG00000198183 CDS Human protein_coding chr20:31827694 chr20:31827693 synonymous SNV . 0 20 hm7G_associated_SNPs_37662 0 0 0 0 2 BPIFA1 chr20:31827716 5'GT 31827716 Upstream 24bp 34661 chrX 107826154 107826154 1 + G T UCEC 107826155 + 107826135 107826175 41 TACCCTGGTGAACCCGGAAGGGATGGTGAAAAGGTAAGAAT TACCCTGGTGAACCCGGAATGGATGGTGAAAAGGTAAGAAT < 41bp 0.364100000880728 0.701080912936757 NA NA prediction 0.402161825873514 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107826155 chrX:107826154 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_37663 0 0 1 0 2 COL4A5 chrX:107826114 3'AG 107826114 Downstream 41bp 34662 chrX 107826154 107826154 1 + G T UCEC 107826155 + 107826135 107826175 41 TACCCTGGTGAACCCGGAAGGGATGGTGAAAAGGTAAGAAT TACCCTGGTGAACCCGGAATGGATGGTGAAAAGGTAAGAAT < 41bp 0.364100000880728 0.701080912936757 NA NA prediction 0.402161825873514 Functional Gain - COL4A5 ENSG00000188153 CDS Human protein_coding chrX:107826155 chrX:107826154 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_37663 0 0 1 0 2 COL4A5 chrX:107826167 5'GT 107826167 Upstream 14bp 34663 chr15 85431013 85431013 1 + C T UCEC 85431014 + 85430994 85431034 41 GGAGAACGACCCCTCGAGACGAAGAGAGTCCATCTCTCTCA GGAGAACGACCCCTCGAGATGAAGAGAGTCCATCTCTCTCA < 41bp 0.52473662045834 0.725817327283736 NA NA prediction 0.402161413650792 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85431014 chr15:85431013 stopgain 0.002 0 20 hm7G_associated_SNPs_37664 0 0 1 0 2 SLC28A1 chr15:85430976 3'AG 85430976 Downstream 38bp 34664 chr15 85431013 85431013 1 + C T UCEC 85431014 + 85430994 85431034 41 GGAGAACGACCCCTCGAGACGAAGAGAGTCCATCTCTCTCA GGAGAACGACCCCTCGAGATGAAGAGAGTCCATCTCTCTCA < 41bp 0.52473662045834 0.725817327283736 NA NA prediction 0.402161413650792 Functional Gain - SLC28A1 ENSG00000156222 CDS Human protein_coding chr15:85431014 chr15:85431013 stopgain 0.002 0 20 hm7G_associated_SNPs_37664 0 0 1 0 2 SLC28A1 chr15:85431087 5'GT 85431087 Upstream 75bp 34665 chr2 15732063 15732063 1 + G A UCEC 15732064 + 15732044 15732084 41 AGGACGGGGTGAAGATGGCGGCCTTCTCCGGTGCGTTTGTG AGGACGGGGTGAAGATGGCAGCCTTCTCCGGTGCGTTTGTG < 41bp 0.537666715386363 0.738747053973595 NA NA prediction 0.402160677174465 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15732064 chr2:15732063 synonymous SNV . 0 20 hm7G_associated_SNPs_37665 0 0 1 0 1 DDX1 chr2:15732073 5'GT 15732073 Upstream 11bp 34666 chrX 153695592 153695592 1 + C T rs56277624 153695593 + 153695573 153695613 41 AGACATGCCAAGTGATCAACGACACTGCCATGCTGTGTAAG AGACATGCCAAGTGATCAATGACACTGCCATGCTGTGTAAG < 41bp 0.494818497194393 0.701077178303156 NA NA prediction 0.402154356606311 Functional Gain - PLXNA3 ENSG00000130827 CDS Human protein_coding chrX:153695593 chrX:153695592 synonymous SNV . 0 20 hm7G_associated_SNPs_37667 0 0 1 0 1 PLXNA3 chrX:153695575 3'AG 153695575 Downstream 18bp 34667 chr2 158142577 158142577 1 + C T BRCA 158142578 + 158142558 158142598 41 GTCCCAGTTTCCAAAAGTTCGGATTCTTCGCCTCAAAGAGA GTCCCAGTTTCCAAAAGTTTGGATTCTTCGCCTCAAAGAGA < 41bp 0.513453220277186 0.714528765061202 NA NA prediction 0.402151089568033 Functional Gain - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158142578 chr2:158142577 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37668 0 0 0 0 2 GALNT5 chr2:158142527 3'AG 158142527 Downstream 51bp 34668 chr2 158142577 158142577 1 + C T BRCA 158142578 + 158142558 158142598 41 GTCCCAGTTTCCAAAAGTTCGGATTCTTCGCCTCAAAGAGA GTCCCAGTTTCCAAAAGTTTGGATTCTTCGCCTCAAAGAGA < 41bp 0.513453220277186 0.714528765061202 NA NA prediction 0.402151089568033 Functional Gain - GALNT5 ENSG00000136542 CDS Human protein_coding chr2:158142578 chr2:158142577 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37668 0 0 0 0 2 GALNT5 chr2:158142646 5'GT 158142646 Upstream 70bp 34669 chr10 82369275 82369275 1 + G A SKCM 82369276 + 82369256 82369296 41 CGCCGAGCTGGCTTCGAGAGGAACACCAAGTTCATCGCCCC CGCCGAGCTGGCTTCGAGAAGAACACCAAGTTCATCGCCCC < 41bp 0.523929093636002 0.72500439829778 NA NA prediction 0.402150609323555 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82369276 chr10:82369275 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_37669 0 0 0 0 3 SH2D4B chr10:82369180 3'AG 82369180 Downstream 96bp 34670 chr10 82369275 82369275 1 + G A SKCM 82369276 + 82369256 82369296 41 CGCCGAGCTGGCTTCGAGAGGAACACCAAGTTCATCGCCCC CGCCGAGCTGGCTTCGAGAAGAACACCAAGTTCATCGCCCC < 41bp 0.523929093636002 0.72500439829778 NA NA prediction 0.402150609323555 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82369276 chr10:82369275 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_37669 0 0 0 0 3 SH2D4B chr10:82369183 3'AG 82369183 Downstream 93bp 34671 chr10 82369275 82369275 1 + G A SKCM 82369276 + 82369256 82369296 41 CGCCGAGCTGGCTTCGAGAGGAACACCAAGTTCATCGCCCC CGCCGAGCTGGCTTCGAGAAGAACACCAAGTTCATCGCCCC < 41bp 0.523929093636002 0.72500439829778 NA NA prediction 0.402150609323555 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82369276 chr10:82369275 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_37669 0 0 0 0 3 SH2D4B chr10:82369307 5'GT 82369307 Upstream 33bp 34672 chr12 109687800 109687800 1 + C T COAD 109687801 + 109687781 109687821 41 TTTTGAAGATACATGATCACGGATATCATCGGGAAGGATGA TTTTGAAGATACATGATCATGGATATCATCGGGAAGGATGA < 41bp 0.519660905887442 0.720735498941345 NA NA prediction 0.402149186107804 Functional Gain - ACACB ENSG00000076555 CDS Human protein_coding chr12:109687801 chr12:109687800 nonsynonymous SNV 0.126 2 20 hm7G_associated_SNPs_37670 0 0 0 0 1 ACACB chr12:109687789 3'AG 109687789 Downstream 12bp 34673 chr11 14276254 14276254 1 + C T rs370990684 14276255 + 14276235 14276275 41 TTCCCTGGGACGCTGGCACCGACAGCGGGGTGACCTATGAG TTCCCTGGGACGCTGGCACTGACAGCGGGGTGACCTATGAG < 41bp 0.543659620767287 0.74473317604489 NA NA prediction 0.402147110555207 Functional Gain - SPON1 ENSG00000152268 ncRNA_exonic Human other chr11:14276255 chr11:14276254 . . 0 20 hm7G_associated_SNPs_37672 0 0 0 0 1 SPON1 chr11:14276275 5'GT 14276275 Upstream 22bp 34674 chr7 134718988 134718988 1 + C T UCEC 134718989 + 134718969 134719009 41 TTTCCAAGTCACTAATATGCGAGCAGGAATAGTCTACAGAT TTTCCAAGTCACTAATATGTGAGCAGGAATAGTCTACAGAT < 41bp 0.494697426710799 0.70107307207744 NA NA prediction 0.40214614415488 Functional Gain - AGBL3 ENSG00000146856 CDS Human protein_coding chr7:134718989 chr7:134718988 stopgain 0.986 0 20 hm7G_associated_SNPs_37673 0 0 0 0 1 AGBL3 chr7:134718900 3'AG 134718900 Downstream 89bp 34675 chrX 79277788 79277788 1 + C T UCEC 79277789 + 79277769 79277809 41 ATGGCTCTGAGCTCTCGGGCGCGTGCCTTCTCCGTGGAAGC ATGGCTCTGAGCTCTCGGGTGCGTGCCTTCTCCGTGGAAGC < 41bp 0.538346206726084 0.739418535629675 NA NA prediction 0.402144657807182 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277789 chrX:79277788 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_37674 0 0 0 0 1 TBX22 chrX:79277767 3'AG 79277767 Downstream 22bp 34676 chr17 45699224 45699224 1 + C T KIRP 45699225 + 45699205 45699245 41 GAATGCTGCCTGGCTAAAGCGAGATGCTGAGAGCATCCACC GAATGCTGCCTGGCTAAAGTGAGATGCTGAGAGCATCCACC < 41bp 0.506266345939205 0.707338583447323 NA NA prediction 0.402144475016235 Functional Gain - NPEPPS ENSG00000141279 CDS Human protein_coding chr17:45699225 chr17:45699224 stopgain 1.000 1 20 hm7G_associated_SNPs_37675 0 0 1 0 1 NPEPPS chr17:45699134 3'AG 45699134 Downstream 91bp 34677 chr19 11031515 11031515 1 + C T COAD 11031516 + 11031496 11031536 41 TGTCTCTGCCATAGATACACGGGCACAACGCCCTCACCCCC TGTCTCTGCCATAGATACATGGGCACAACGCCCTCACCCCC < 41bp 0.504711428134283 0.705781589043995 NA NA prediction 0.402140321819423 Functional Gain - CARM1 ENSG00000142453 CDS Human protein_coding chr19:11031516 chr19:11031515 nonsynonymous SNV 0.376 3 20 hm7G_associated_SNPs_37676 0 0 1 0 1 CARM1 chr19:11031510 3'AG 11031510 Downstream 6bp 34678 chr1 45267581 45267581 1 + G A LUSC 45267582 + 45267562 45267602 41 TTGGGCTGGCAGCCCGGTTGGAGCCTCCGGAGCAGAGGAAG TTGGGCTGGCAGCCCGGTTAGAGCCTCCGGAGCAGAGGAAG < 41bp 0.555688195553619 0.7567571088226 NA NA prediction 0.402137826537963 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267582 chr1:45267581 synonymous SNV . 0 20 hm7G_associated_SNPs_37677 0 0 1 0 2 PLK3 chr1:45267517 3'AG 45267517 Downstream 65bp 34679 chr1 45267581 45267581 1 + G A LUSC 45267582 + 45267562 45267602 41 TTGGGCTGGCAGCCCGGTTGGAGCCTCCGGAGCAGAGGAAG TTGGGCTGGCAGCCCGGTTAGAGCCTCCGGAGCAGAGGAAG < 41bp 0.555688195553619 0.7567571088226 NA NA prediction 0.402137826537963 Functional Gain - PLK3 ENSG00000173846 CDS Human protein_coding chr1:45267582 chr1:45267581 synonymous SNV . 0 20 hm7G_associated_SNPs_37677 0 0 1 0 2 PLK3 chr1:45267604 5'GT 45267604 Upstream 24bp 34680 chr15 76463342 76463342 1 + C T READ 76463343 + 76463323 76463363 41 TCCTCTCACAGGTGTTTGACGGGGCTGTGATCATCCTATCT TCCTCTCACAGGTGTTTGATGGGGCTGTGATCATCCTATCT < 41bp 0.53642527698301 0.737493447380988 NA NA prediction 0.402136340795956 Functional Gain - TMEM266 ENSG00000169758 CDS Human protein_coding chr15:76463343 chr15:76463342 synonymous SNV . 0 20 hm7G_associated_SNPs_37678 0 0 0 0 1 TMEM266 chr15:76463334 3'AG 76463334 Downstream 9bp 34681 chr2 10105471 10105471 1 + C T ACC 10105472 + 10105452 10105492 41 TCGAGGAGATTGCGTATAACGCCATTTCCTTCACATGGGAC TCGAGGAGATTGCGTATAATGCCATTTCCTTCACATGGGAC < 41bp 0.484423607565896 0.701067864989016 NA NA prediction 0.402135729978033 Functional Gain - GRHL1 ENSG00000134317 CDS Human protein_coding chr2:10105472 chr2:10105471 synonymous SNV . 0 20 hm7G_associated_SNPs_37679 0 0 0 0 2 GRHL1 chr2:10105416 3'AG 10105416 Downstream 56bp 34682 chr2 10105471 10105471 1 + C T ACC 10105472 + 10105452 10105492 41 TCGAGGAGATTGCGTATAACGCCATTTCCTTCACATGGGAC TCGAGGAGATTGCGTATAATGCCATTTCCTTCACATGGGAC < 41bp 0.484423607565896 0.701067864989016 NA NA prediction 0.402135729978033 Functional Gain - GRHL1 ENSG00000134317 CDS Human protein_coding chr2:10105472 chr2:10105471 synonymous SNV . 0 20 hm7G_associated_SNPs_37679 0 0 0 0 2 GRHL1 chr2:10105510 5'GT 10105510 Upstream 40bp 34683 chr21 45844775 45844775 1 + C T UCEC 45844776 + 45844756 45844796 41 CTGCACTGGATCGTGAGGACGCTGCGGGCCAGCGGCTTCAG CTGCACTGGATCGTGAGGATGCTGCGGGCCAGCGGCTTCAG < 41bp 0.520276358998022 0.721341643831839 NA NA prediction 0.402130569667634 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45844776 chr21:45844775 nonsynonymous SNV 0.059 2 20 hm7G_associated_SNPs_37681 0 0 0 0 2 TRPM2 chr21:45844735 3'AG 45844735 Downstream 41bp 34684 chr21 45844775 45844775 1 + C T UCEC 45844776 + 45844756 45844796 41 CTGCACTGGATCGTGAGGACGCTGCGGGCCAGCGGCTTCAG CTGCACTGGATCGTGAGGATGCTGCGGGCCAGCGGCTTCAG < 41bp 0.520276358998022 0.721341643831839 NA NA prediction 0.402130569667634 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45844776 chr21:45844775 nonsynonymous SNV 0.059 2 20 hm7G_associated_SNPs_37681 0 0 0 0 2 TRPM2 chr21:45844822 5'GT 45844822 Upstream 48bp 34685 chr10 115345557 115345557 1 + G A SKCM 115345558 + 115345538 115345578 41 CACCTTCCCCACAGGAAAAGGGTCCCGCCAGCTCCTGGATG CACCTTCCCCACAGGAAAAAGGTCCCGCCAGCTCCTGGATG < 41bp 0.485425882367465 0.70106480421204 NA NA prediction 0.402129608424079 Functional Gain - HABP2 ENSG00000148702 CDS Human protein_coding chr10:115345558 chr10:115345557 nonsynonymous SNV 0.936 3 20 hm7G_associated_SNPs_37683 0 0 0 0 1 HABP2 chr10:115345552 3'AG 115345552 Downstream 6bp 34686 chr8 120428851 120428851 1 + G A rs541889252 120428852 + 120428832 120428872 41 CCTGCTTCTCCATCTCCTGGGACAGGTAAGTGGCACACCCT CCTGCTTCTCCATCTCCTGAGACAGGTAAGTGGCACACCCT < 41bp 0.518201466424741 0.719265751387009 NA NA prediction 0.402128569924537 Functional Gain - NOV ENSG00000136999 CDS Human protein_coding chr8:120428852 chr8:120428851 nonsynonymous SNV 0.802 0 20 hm7G_associated_SNPs_37684 0 0 0 0 1 NOV chr8:120428856 5'GT 120428856 Upstream 6bp 34687 chr6 117199034 117199034 1 + C T STAD 117199035 + 117199015 117199055 41 GACAGCAAAACCAAAGCAGCGGATCAATACCTGTCTCAGAA GACAGCAAAACCAAAGCAGTGGATCAATACCTGTCTCAGAA < 41bp 0.544558991490664 0.745621116364139 NA NA prediction 0.40212424974695 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117199035 chr6:117199034 nonsynonymous SNV 0.098 0 20 hm7G_associated_SNPs_37685 0 0 0 0 2 RFX6 chr6:117198959 3'AG 117198959 Downstream 76bp 34688 chr6 117199034 117199034 1 + C T STAD 117199035 + 117199015 117199055 41 GACAGCAAAACCAAAGCAGCGGATCAATACCTGTCTCAGAA GACAGCAAAACCAAAGCAGTGGATCAATACCTGTCTCAGAA < 41bp 0.544558991490664 0.745621116364139 NA NA prediction 0.40212424974695 Functional Gain - RFX6 ENSG00000185002 CDS Human protein_coding chr6:117199035 chr6:117199034 nonsynonymous SNV 0.098 0 20 hm7G_associated_SNPs_37685 0 0 0 0 2 RFX6 chr6:117199115 5'GT 117199115 Upstream 82bp 34689 chr15 89386648 89386648 1 + C T SKCM 89386649 + 89386629 89386669 41 GGAAGCAGCCAATGAGTGCCGGCGGCTGGGTGCCCGGCTGG GGAAGCAGCCAATGAGTGCTGGCGGCTGGGTGCCCGGCTGG < 41bp 0.490548758159477 0.701061809549753 NA NA prediction 0.402123619099507 Functional Gain - ACAN ENSG00000157766 CDS Human protein_coding chr15:89386649 chr15:89386648 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_37686 0 0 0 0 1 ACAN chr15:89386586 3'AG 89386586 Downstream 63bp 34690 chr2 233393014 233393014 1 + G A SKCM 233393015 + 233392995 233393035 41 GTGGAATGCTGAAGAATTTGGAAACATCAGTGTCCTGCGCC GTGGAATGCTGAAGAATTTAGAAACATCAGTGTCCTGCGCC < 41bp 0.540163738151707 0.74122512809582 NA NA prediction 0.402122779888227 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233393015 chr2:233393014 nonsynonymous SNV 0.919 2 20 hm7G_associated_SNPs_37687 0 0 0 0 3 CHRND chr2:233392972 3'AG 233392972 Downstream 43bp 34691 chr2 233393014 233393014 1 + G A SKCM 233393015 + 233392995 233393035 41 GTGGAATGCTGAAGAATTTGGAAACATCAGTGTCCTGCGCC GTGGAATGCTGAAGAATTTAGAAACATCAGTGTCCTGCGCC < 41bp 0.540163738151707 0.74122512809582 NA NA prediction 0.402122779888227 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233393015 chr2:233393014 nonsynonymous SNV 0.919 2 20 hm7G_associated_SNPs_37687 0 0 0 0 3 CHRND chr2:233393049 5'GT 233393049 Upstream 36bp 34692 chr2 233393014 233393014 1 + G A SKCM 233393015 + 233392995 233393035 41 GTGGAATGCTGAAGAATTTGGAAACATCAGTGTCCTGCGCC GTGGAATGCTGAAGAATTTAGAAACATCAGTGTCCTGCGCC < 41bp 0.540163738151707 0.74122512809582 NA NA prediction 0.402122779888227 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233393015 chr2:233393014 nonsynonymous SNV 0.919 2 20 hm7G_associated_SNPs_37687 0 0 0 0 3 CHRND chr2:233393081 5'GT 233393081 Upstream 68bp 34693 chr15 69011561 69011561 1 + G T STAD 69011562 + 69011542 69011582 41 CCCGGATGAATGGCTGGGAGGCATCAACCGAGGTACCACAG CCCGGATGAATGGCTGGGATGCATCAACCGAGGTACCACAG < 41bp 0.716124819756927 0.91718577709876 NA NA prediction 0.402121914683667 Functional Gain - CORO2B ENSG00000103647 CDS Human protein_coding chr15:69011562 chr15:69011561 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_37688 0 0 0 0 2 CORO2B chr15:69011483 3'AG 69011483 Downstream 79bp 34694 chr15 69011561 69011561 1 + G T STAD 69011562 + 69011542 69011582 41 CCCGGATGAATGGCTGGGAGGCATCAACCGAGGTACCACAG CCCGGATGAATGGCTGGGATGCATCAACCGAGGTACCACAG < 41bp 0.716124819756927 0.91718577709876 NA NA prediction 0.402121914683667 Functional Gain - CORO2B ENSG00000103647 CDS Human protein_coding chr15:69011562 chr15:69011561 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_37688 0 0 0 0 2 CORO2B chr15:69011573 5'GT 69011573 Upstream 13bp 34695 chr19 36033254 36033254 1 + C T rs147604192 36033255 + 36033235 36033275 41 AGATCCCCTGGAGGGCTGTCGGGAGCCCCTACGTGGTGGAG AGATCCCCTGGAGGGCTGTTGGGAGCCCCTACGTGGTGGAG < 41bp 0.549644784065714 0.750705522849683 NA NA prediction 0.402121477567938 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033255 chr19:36033254 synonymous SNV . 0 20 hm7G_associated_SNPs_37689 0 0 0 0 2 GAPDHS chr19:36033221 3'AG 36033221 Downstream 34bp 34696 chr19 36033254 36033254 1 + C T rs147604192 36033255 + 36033235 36033275 41 AGATCCCCTGGAGGGCTGTCGGGAGCCCCTACGTGGTGGAG AGATCCCCTGGAGGGCTGTTGGGAGCCCCTACGTGGTGGAG < 41bp 0.549644784065714 0.750705522849683 NA NA prediction 0.402121477567938 Functional Gain - GAPDHS ENSG00000105679 CDS Human protein_coding chr19:36033255 chr19:36033254 synonymous SNV . 0 20 hm7G_associated_SNPs_37689 0 0 0 0 2 GAPDHS chr19:36033311 5'GT 36033311 Upstream 58bp 34697 chrX 10188755 10188755 1 + C T UCEC 10188756 + 10188736 10188776 41 AATTCCATCATGTACTTCACGGAGGAACCCCCCGAGCTGCC AATTCCATCATGTACTTCATGGAGGAACCCCCCGAGCTGCC < 41bp 0.552475156941776 0.753535432884579 NA NA prediction 0.402120551885605 Functional Gain - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10188756 chrX:10188755 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_37690 0 0 0 0 1 CLCN4 chrX:10188701 3'AG 10188701 Downstream 55bp 34698 chr22 47071377 47071377 1 + C T BLCA 47071378 + 47071358 47071398 41 CTTCCAGTTACTTGTGCTTCGAAAGCTCCAAATCTGGGTCC CTTCCAGTTACTTGTGCTTTGAAAGCTCCAAATCTGGGTCC < 41bp 0.545042907780127 0.746101577331334 NA NA prediction 0.402117339102414 Functional Gain - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47071378 chr22:47071377 synonymous SNV . 0 20 hm7G_associated_SNPs_37691 0 0 1 0 2 GRAMD4 chr22:47071365 3'AG 47071365 Downstream 13bp 34699 chr22 47071377 47071377 1 + C T BLCA 47071378 + 47071358 47071398 41 CTTCCAGTTACTTGTGCTTCGAAAGCTCCAAATCTGGGTCC CTTCCAGTTACTTGTGCTTTGAAAGCTCCAAATCTGGGTCC < 41bp 0.545042907780127 0.746101577331334 NA NA prediction 0.402117339102414 Functional Gain - GRAMD4 ENSG00000075240 CDS Human protein_coding chr22:47071378 chr22:47071377 synonymous SNV . 0 20 hm7G_associated_SNPs_37691 0 0 1 0 2 GRAMD4 chr22:47071449 5'GT 47071449 Upstream 73bp 34700 chr1 1387813 1387813 1 + C T LGG 1387814 + 1387794 1387834 41 CGGGACAAAGTGACAGCCACGGTAAACATACTCATAAAACA CGGGACAAAGTGACAGCCATGGTAAACATACTCATAAAACA < 41bp 0.492162628726473 0.701058608238241 NA NA prediction 0.402117216476483 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387814 chr1:1387813 nonsynonymous SNV 0.834 5 20 hm7G_associated_SNPs_37692 0 0 1 0 2 ATAD3C chr1:1387745 3'AG 1387745 Downstream 69bp 34701 chr1 1387813 1387813 1 + C T LGG 1387814 + 1387794 1387834 41 CGGGACAAAGTGACAGCCACGGTAAACATACTCATAAAACA CGGGACAAAGTGACAGCCATGGTAAACATACTCATAAAACA < 41bp 0.492162628726473 0.701058608238241 NA NA prediction 0.402117216476483 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1387814 chr1:1387813 nonsynonymous SNV 0.834 5 20 hm7G_associated_SNPs_37692 0 0 1 0 2 ATAD3C chr1:1387814 5'GT 1387814 Upstream 2bp 34702 chr11 125255470 125255470 1 + C T GBM 125255471 + 125255451 125255491 41 CCTCTTTTCCCGCTCCTGACGCTGCTGTTTGAGAAATGTGA CCTCTTTTCCCGCTCCTGATGCTGCTGTTTGAGAAATGTGA < 41bp 0.554800621792247 0.755857521214543 NA NA prediction 0.402113798844591 Functional Gain - PKNOX2 ENSG00000165495 CDS Human protein_coding chr11:125255471 chr11:125255470 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37693 0 0 0 0 1 PKNOX2 chr11:125255447 3'AG 125255447 Downstream 24bp 34703 chr16 88039782 88039782 1 + C T UCEC 88039783 + 88039763 88039803 41 GAGGACGGGGAGAGCGGCTCGGAGGCCAGCGACTCTGTGTC GAGGACGGGGAGAGCGGCTTGGAGGCCAGCGACTCTGTGTC < 41bp 0.553502947789381 0.75455922453647 NA NA prediction 0.402112553494179 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88039783 chr16:88039782 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_37694 0 0 1 0 2 BANP chr16:88039696 3'AG 88039696 Downstream 87bp 34704 chr16 88039782 88039782 1 + C T UCEC 88039783 + 88039763 88039803 41 GAGGACGGGGAGAGCGGCTCGGAGGCCAGCGACTCTGTGTC GAGGACGGGGAGAGCGGCTTGGAGGCCAGCGACTCTGTGTC < 41bp 0.553502947789381 0.75455922453647 NA NA prediction 0.402112553494179 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88039783 chr16:88039782 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_37694 0 0 1 0 2 BANP chr16:88039871 5'GT 88039871 Upstream 90bp 34705 chr11 67163803 67163803 1 + C T PAAD 67163804 + 67163784 67163824 41 TGGCCACACTCTCAGACACCGACTCGCACTCCCAGGACCTG TGGCCACACTCTCAGACACTGACTCGCACTCCCAGGACCTG < 41bp 0.533342595148969 0.734398653450163 NA NA prediction 0.402112116602389 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67163804 chr11:67163803 synonymous SNV . 0 20 hm7G_associated_SNPs_37695 0 0 1 0 2 RAD9A chr11:67163734 3'AG 67163734 Downstream 70bp 34706 chr11 67163803 67163803 1 + C T PAAD 67163804 + 67163784 67163824 41 TGGCCACACTCTCAGACACCGACTCGCACTCCCAGGACCTG TGGCCACACTCTCAGACACTGACTCGCACTCCCAGGACCTG < 41bp 0.533342595148969 0.734398653450163 NA NA prediction 0.402112116602389 Functional Gain - RAD9A ENSG00000172613 CDS Human protein_coding chr11:67163804 chr11:67163803 synonymous SNV . 0 20 hm7G_associated_SNPs_37695 0 0 1 0 2 RAD9A chr11:67163871 5'GT 67163871 Upstream 69bp 34707 chrX 48564940 48564940 1 + C T UCEC 48564941 + 48564921 48564961 41 CATAGACAACCTTGACGAGCGGCTGCCCCGCATCGCTTTCT CATAGACAACCTTGACGAGTGGCTGCCCCGCATCGCTTTCT < 41bp 0.532388614491127 0.733444436208392 NA NA prediction 0.402111643434529 Functional Gain - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564941 chrX:48564940 nonsynonymous SNV 0.045 4 20 hm7G_associated_SNPs_37697 0 0 1 0 1 SUV39H1 chrX:48565018 5'GT 48565018 Upstream 79bp 34708 chr7 128320140 128320140 1 + C T UCEC 128320141 + 128320121 128320161 41 GAGCCCCTCGTGCTGCTGGCGGCTGAGCAGACCAGTGGCAG GAGCCCCTCGTGCTGCTGGTGGCTGAGCAGACCAGTGGCAG < 41bp 0.547250465831743 0.748305346818452 NA NA prediction 0.402109761973418 Functional Gain - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128320141 chr7:128320140 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_37700 0 0 0 0 2 FAM71F2 chr7:128320085 3'AG 128320085 Downstream 56bp 34709 chr7 128320140 128320140 1 + C T UCEC 128320141 + 128320121 128320161 41 GAGCCCCTCGTGCTGCTGGCGGCTGAGCAGACCAGTGGCAG GAGCCCCTCGTGCTGCTGGTGGCTGAGCAGACCAGTGGCAG < 41bp 0.547250465831743 0.748305346818452 NA NA prediction 0.402109761973418 Functional Gain - FAM71F2 ENSG00000205085 CDS Human protein_coding chr7:128320141 chr7:128320140 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_37700 0 0 0 0 2 FAM71F2 chr7:128320203 5'GT 128320203 Upstream 64bp 34710 chr14 24036478 24036478 1 - G A rs199693708 24036477 - 24036457 24036497 41 GGACCTCATCGAAGAGATTCGCGGGGCCAAGACTCAGGCCC GGACCTCATCGAAGAGATTTGCGGGGCCAAGACTCAGGCCC < 41bp 0.515598953664658 0.716651263522951 NA NA prediction 0.402104619716587 Functional Gain - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24036477 chr14:24036478 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_37701 0 0 1 0 3 AP1G2 chr14:24036446 5'GT 24036446 Upstream 33bp 34711 chr14 24036478 24036478 1 - G A rs199693708 24036477 - 24036457 24036497 41 GGACCTCATCGAAGAGATTCGCGGGGCCAAGACTCAGGCCC GGACCTCATCGAAGAGATTTGCGGGGCCAAGACTCAGGCCC < 41bp 0.515598953664658 0.716651263522951 NA NA prediction 0.402104619716587 Functional Gain - AP1G2 ENSG00000213983 CDS Human antisense chr14:24036477 chr14:24036478 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_37701 0 0 1 0 3 LOC102724814 chr14:24036528 3'AG 24036528 Downstream 51bp 34712 chr14 24036478 24036478 1 - G A rs199693708 24036477 - 24036457 24036497 41 GGACCTCATCGAAGAGATTCGCGGGGCCAAGACTCAGGCCC GGACCTCATCGAAGAGATTTGCGGGGCCAAGACTCAGGCCC < 41bp 0.515598953664658 0.716651263522951 NA NA prediction 0.402104619716587 Functional Gain - AP1G2 ENSG00000213983 CDS Human antisense chr14:24036477 chr14:24036478 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_37701 0 0 1 0 3 LOC102724814 chr14:24036559 3'AG 24036559 Downstream 82bp 34713 chr17 26820649 26820649 1 + C T COAD 26820650 + 26820630 26820670 41 AACAGCAGGCAGCCTACTGCGTCATCCAGACCGAGCACAGG AACAGCAGGCAGCCTACTGTGTCATCCAGACCGAGCACAGG < 41bp 0.510944322518495 0.711995420755966 NA NA prediction 0.402102196474943 Functional Gain - SLC13A2 ENSG00000007216 CDS Human protein_coding chr17:26820650 chr17:26820649 synonymous SNV . 0 20 hm7G_associated_SNPs_37702 0 0 0 0 1 SLC13A2 chr17:26820589 3'AG 26820589 Downstream 61bp 34714 chr17 36288203 36288203 1 + C T SKCM 36288204 + 36288184 36288224 41 CTGCCCACAGCTCATAGATCGAGCGTACAAGGGAATGCCCA CTGCCCACAGCTCATAGATTGAGCGTACAAGGGAATGCCCA < 41bp 0.497208493244868 0.701049090242493 NA NA prediction 0.402098180484986 Functional Gain - TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L ENSG00000185128 CDS Human other chr17:36288204 chr17:36288203 stopgain 0.006 0 20 hm7G_associated_SNPs_37704 0 0 0 0 2 TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L chr17:36288194 3'AG 36288194 Downstream 10bp 34715 chr17 36288203 36288203 1 + C T SKCM 36288204 + 36288184 36288224 41 CTGCCCACAGCTCATAGATCGAGCGTACAAGGGAATGCCCA CTGCCCACAGCTCATAGATTGAGCGTACAAGGGAATGCCCA < 41bp 0.497208493244868 0.701049090242493 NA NA prediction 0.402098180484986 Functional Gain - TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L ENSG00000185128 CDS Human other chr17:36288204 chr17:36288203 stopgain 0.006 0 20 hm7G_associated_SNPs_37704 0 0 0 0 2 TBC1D3;TBC1D3C;TBC1D3D;TBC1D3E;TBC1D3F;TBC1D3G;TBC1D3H;TBC1D3I;TBC1D3K;TBC1D3L chr17:36288301 5'GT 36288301 Upstream 99bp 34716 chr17 38131251 38131251 1 + C T LUSC 38131252 + 38131232 38131272 41 TGGGCGCCATCCTCTATTTCGTTGGAGCCCTAACAGGTAAG TGGGCGCCATCCTCTATTTTGTTGGAGCCCTAACAGGTAAG < 41bp 0.520614380962005 0.721663267194332 NA NA prediction 0.402097772464653 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38131252 chr17:38131251 synonymous SNV . 0 20 hm7G_associated_SNPs_37705 0 0 0 0 2 GSDMA chr17:38131153 3'AG 38131153 Downstream 99bp 34717 chr17 38131251 38131251 1 + C T LUSC 38131252 + 38131232 38131272 41 TGGGCGCCATCCTCTATTTCGTTGGAGCCCTAACAGGTAAG TGGGCGCCATCCTCTATTTTGTTGGAGCCCTAACAGGTAAG < 41bp 0.520614380962005 0.721663267194332 NA NA prediction 0.402097772464653 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38131252 chr17:38131251 synonymous SNV . 0 20 hm7G_associated_SNPs_37705 0 0 0 0 2 GSDMA chr17:38131267 5'GT 38131267 Upstream 17bp 34718 chr11 66008962 66008962 1 + G A LUSC 66008963 + 66008943 66008983 41 CTACTGGCTGGGCCACCCCGGGGAGCGGAGGAGGGAAGGCG CTACTGGCTGGGCCACCCCAGGGAGCGGAGGAGGGAAGGCG < 41bp 0.57430195217373 0.775346743936885 NA NA prediction 0.40208958352631 Functional Gain - PACS1 ENSG00000175115 CDS Human protein_coding chr11:66008963 chr11:66008962 nonsynonymous SNV 0.449 1 20 hm7G_associated_SNPs_37708 0 0 1 0 1 PACS1 chr11:66008898 3'AG 66008898 Downstream 65bp 34719 chr17 48628086 48628086 1 + C T UCEC 48628087 + 48628067 48628107 41 AGTCCGGAGGCTTCTATAGCGCAGAAGATGCAGACTCGCCC AGTCCGGAGGCTTCTATAGTGCAGAAGATGCAGACTCGCCC < 41bp 0.489912985835759 0.701042117963537 NA NA prediction 0.402084235927074 Functional Gain - SPATA20 ENSG00000006282 CDS Human protein_coding chr17:48628087 chr17:48628086 synonymous SNV . 0 20 hm7G_associated_SNPs_37709 0 0 1 0 1 SPATA20 chr17:48628069 3'AG 48628069 Downstream 18bp 34720 chr17 9559767 9559767 1 + C T COAD 9559768 + 9559748 9559788 41 TCCAAGGCAATTCCCAGCACGACGCCCTGGAATTCCTGCTC TCCAAGGCAATTCCCAGCATGACGCCCTGGAATTCCTGCTC < 41bp 0.487709163287377 0.701036108308085 NA NA prediction 0.402072216616171 Functional Gain - USP43 ENSG00000154914 CDS Human protein_coding chr17:9559768 chr17:9559767 synonymous SNV . 0 20 hm7G_associated_SNPs_37715 0 0 0 0 1 USP43 chr17:9559851 5'GT 9559851 Upstream 85bp 34721 chr10 43610125 43610125 1 + C T CESC 43610126 + 43610106 43610146 41 CTACTCCTCTTCCGGTGCCCGCCGGCCCTCGCTGGACTCCA CTACTCCTCTTCCGGTGCCTGCCGGCCCTCGCTGGACTCCA < 41bp 0.555960313990738 0.756994659161608 NA NA prediction 0.402068690341741 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43610126 chr10:43610125 nonsynonymous SNV 0.077 4 20 hm7G_associated_SNPs_37717 0 0 0 0 1 RET chr10:43610184 5'GT 43610184 Upstream 60bp 34722 chr16 2130310 2130310 1 + C T LUAD 2130311 + 2130291 2130331 41 GTTCCTGTGCAGGAGAAGACGAACCTGGCGGCCTATGTGCC GTTCCTGTGCAGGAGAAGATGAACCTGGCGGCCTATGTGCC < 41bp 0.48760027408853 0.701030049661192 NA NA prediction 0.402060099322384 Functional Gain - TSC2 ENSG00000103197 CDS Human protein_coding chr16:2130311 chr16:2130310 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_37720 1 0 1 0 1 TSC2 chr16:2130378 5'GT 2130378 Upstream 69bp 34723 chr1 32050933 32050933 1 + G A PAAD 32050934 + 32050914 32050954 41 CACTCCTGTCTACCGCCTCGGCTCCAACGTAAGTCAGCACT CACTCCTGTCTACCGCCTCAGCTCCAACGTAAGTCAGCACT < 41bp 0.549157394900136 0.750186283782354 NA NA prediction 0.402057777764435 Functional Gain - TINAGL1 ENSG00000142910 CDS Human protein_coding chr1:32050934 chr1:32050933 nonsynonymous SNV 0.125 2 20 hm7G_associated_SNPs_37722 0 0 0 0 1 TINAGL1 chr1:32050941 5'GT 32050941 Upstream 9bp 34724 chr17 64876751 64876751 1 + G A COAD 64876752 + 64876732 64876772 41 GTTTATCCTGAACAACATCGGACACATCCGTCCCCACCGGA GTTTATCCTGAACAACATCAGACACATCCGTCCCCACCGGA < 41bp 0.518416545688016 0.719444764224237 NA NA prediction 0.402056437072441 Functional Gain - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64876752 chr17:64876751 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_37723 0 0 0 0 2 CACNG5 chr17:64876674 3'AG 64876674 Downstream 78bp 34725 chr17 64876751 64876751 1 + G A COAD 64876752 + 64876732 64876772 41 GTTTATCCTGAACAACATCGGACACATCCGTCCCCACCGGA GTTTATCCTGAACAACATCAGACACATCCGTCCCCACCGGA < 41bp 0.518416545688016 0.719444764224237 NA NA prediction 0.402056437072441 Functional Gain - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64876752 chr17:64876751 nonsynonymous SNV 0.987 4 20 hm7G_associated_SNPs_37723 0 0 0 0 2 CACNG5 chr17:64876814 5'GT 64876814 Upstream 64bp 34726 chr17 40630580 40630580 1 + C T UCEC 40630581 + 40630561 40630601 41 TCCTGCGACAGGCTGAAATCGAGAACCCCCTGGAGGATCCT TCCTGCGACAGGCTGAAATTGAGAACCCCCTGGAGGATCCT < 41bp 0.546731646694611 0.747759586788881 NA NA prediction 0.402055880188541 Functional Gain - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40630581 chr17:40630580 synonymous SNV . 0 20 hm7G_associated_SNPs_37724 0 0 1 0 2 ATP6V0A1 chr17:40630481 3'AG 40630481 Downstream 100bp 34727 chr17 40630580 40630580 1 + C T UCEC 40630581 + 40630561 40630601 41 TCCTGCGACAGGCTGAAATCGAGAACCCCCTGGAGGATCCT TCCTGCGACAGGCTGAAATTGAGAACCCCCTGGAGGATCCT < 41bp 0.546731646694611 0.747759586788881 NA NA prediction 0.402055880188541 Functional Gain - ATP6V0A1 ENSG00000033627 CDS Human protein_coding chr17:40630581 chr17:40630580 synonymous SNV . 0 20 hm7G_associated_SNPs_37724 0 0 1 0 2 ATP6V0A1 chr17:40630607 5'GT 40630607 Upstream 28bp 34728 chr7 141414042 141414042 1 + G T UCEC 141414043 + 141414023 141414063 41 GTTGGTGATTTCTCCAACAGGGAAGCTTCCTTCCAGAGGCC GTTGGTGATTTCTCCAACATGGAAGCTTCCTTCCAGAGGCC < 41bp 0.355962035077219 0.701026524307552 NA NA prediction 0.402053048615103 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141414043 chr7:141414042 nonsynonymous SNV 0.054 2 20 hm7G_associated_SNPs_37728 0 0 0 0 1 WEE2 chr7:141414009 3'AG 141414009 Downstream 34bp 34729 chr6 52541933 52541933 1 + C T CESC 52541934 + 52541914 52541954 41 GTTTTGGTTATGCAGCCCTCGTGACATTTGGAAGCATTTTT GTTTTGGTTATGCAGCCCTTGTGACATTTGGAAGCATTTTT < 41bp 0.528169043445575 0.729195510339739 NA NA prediction 0.402052933788327 Functional Gain - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52541934 chr6:52541933 synonymous SNV . 0 20 hm7G_associated_SNPs_37729 0 0 1 0 2 TMEM14A chr6:52541885 3'AG 52541885 Downstream 49bp 34730 chr6 52541933 52541933 1 + C T CESC 52541934 + 52541914 52541954 41 GTTTTGGTTATGCAGCCCTCGTGACATTTGGAAGCATTTTT GTTTTGGTTATGCAGCCCTTGTGACATTTGGAAGCATTTTT < 41bp 0.528169043445575 0.729195510339739 NA NA prediction 0.402052933788327 Functional Gain - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52541934 chr6:52541933 synonymous SNV . 0 20 hm7G_associated_SNPs_37729 0 0 1 0 2 TMEM14A chr6:52541970 5'GT 52541970 Upstream 38bp 34731 chr19 35837089 35837089 1 + C T UCEC 35837090 + 35837070 35837110 41 GAGATGCAGAGACCTCCCCCGGACTGCGATGACACGGTCAC GAGATGCAGAGACCTCCCCTGGACTGCGATGACACGGTCAC < 41bp 0.55779961044539 0.758824318197718 NA NA prediction 0.402049415504657 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837090 chr19:35837089 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_37730 0 0 0 0 2 CD22 chr19:35837054 3'AG 35837054 Downstream 36bp 34732 chr19 35837089 35837089 1 + C T UCEC 35837090 + 35837070 35837110 41 GAGATGCAGAGACCTCCCCCGGACTGCGATGACACGGTCAC GAGATGCAGAGACCTCCCCTGGACTGCGATGACACGGTCAC < 41bp 0.55779961044539 0.758824318197718 NA NA prediction 0.402049415504657 Functional Gain - CD22 ENSG00000012124 CDS Human protein_coding chr19:35837090 chr19:35837089 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_37730 0 0 0 0 2 CD22 chr19:35837138 5'GT 35837138 Upstream 50bp 34733 chr22 50596619 50596619 1 + C T GBM 50596620 + 50596600 50596640 41 AGCGACATTGGCGTCATCACGCCCTACCGGAAGCAGGTACG AGCGACATTGGCGTCATCATGCCCTACCGGAAGCAGGTACG < 41bp 0.524330392594991 0.725354729235668 NA NA prediction 0.402048673281354 Functional Gain - MOV10L1 ENSG00000073146 CDS Human protein_coding chr22:50596620 chr22:50596619 nonsynonymous SNV 0.918 5 20 hm7G_associated_SNPs_37732 0 0 0 0 1 MOV10L1 chr22:50596635 5'GT 50596635 Upstream 17bp 34734 chr11 65046388 65046388 1 + C T SKCM 65046389 + 65046369 65046409 41 TCAGAAGCTCCCAGACATTCGAGAAGGTGATTGTTTTTCCC TCAGAAGCTCCCAGACATTTGAGAAGGTGATTGTTTTTCCC < 41bp 0.495109429974552 0.701024133672418 NA NA prediction 0.402048267344835 Functional Gain - POLA2 ENSG00000014138 CDS Human protein_coding chr11:65046389 chr11:65046388 stopgain 0.972 1 20 hm7G_associated_SNPs_37734 0 0 0 0 1 POLA2 chr11:65046394 5'GT 65046394 Upstream 7bp 34735 chr5 167891965 167891965 1 + C T HNSC 167891966 + 167891946 167891986 41 GCTGAGGATGCTGGAGAAGCGGGTGAGTTCTGCCTCGAAGG GCTGAGGATGCTGGAGAAGTGGGTGAGTTCTGCCTCGAAGG < 41bp 0.516515366888366 0.717538746708808 NA NA prediction 0.402046759640883 Functional Gain - WWC1 ENSG00000113645 CDS Human protein_coding chr5:167891966 chr5:167891965 nonsynonymous SNV 0.705 2 20 hm7G_associated_SNPs_37736 0 0 0 0 1 WWC1 chr5:167891967 5'GT 167891967 Upstream 3bp 34736 chr16 31384696 31384696 1 + C T GBM 31384697 + 31384677 31384717 41 CAGGACTGTCCTACCGCTACGTGGCAGAGGGCCAGGTGCAC CAGGACTGTCCTACCGCTATGTGGCAGAGGGCCAGGTGCAC < 41bp 0.494903390117226 0.701021773986755 NA NA prediction 0.40204354797351 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31384697 chr16:31384696 synonymous SNV . 0 20 hm7G_associated_SNPs_37737 0 0 0 0 1 ITGAX chr16:31384711 5'GT 31384711 Upstream 16bp 34737 chr3 184101158 184101158 1 + C T STAD 184101159 + 184101139 184101179 41 CAGTCCAGACGGGTGCTGCCGGCTCAGCCAGCCTCACGCTG CAGTCCAGACGGGTGCTGCTGGCTCAGCCAGCCTCACGCTG < 41bp 0.560334388464896 0.761353187338873 NA NA prediction 0.402037597747954 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184101159 chr3:184101158 synonymous SNV . 0 20 hm7G_associated_SNPs_37740 0 0 1 0 2 CHRD chr3:184101100 3'AG 184101100 Downstream 59bp 34738 chr3 184101158 184101158 1 + C T STAD 184101159 + 184101139 184101179 41 CAGTCCAGACGGGTGCTGCCGGCTCAGCCAGCCTCACGCTG CAGTCCAGACGGGTGCTGCTGGCTCAGCCAGCCTCACGCTG < 41bp 0.560334388464896 0.761353187338873 NA NA prediction 0.402037597747954 Functional Gain - CHRD ENSG00000090539 CDS Human protein_coding chr3:184101159 chr3:184101158 synonymous SNV . 0 20 hm7G_associated_SNPs_37740 0 0 1 0 2 CHRD chr3:184101206 5'GT 184101206 Upstream 49bp 34739 chr17 19316077 19316077 1 + C T UCEC 19316078 + 19316058 19316098 41 AAGCTCCTGCCGCAGCGGCCGCTGCCCCCTGCACTGCAGGT AAGCTCCTGCCGCAGCGGCTGCTGCCCCCTGCACTGCAGGT < 41bp 0.52682882974296 0.727845898448203 NA NA prediction 0.402034137410486 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316078 chr17:19316077 nonsynonymous SNV 0.103 2 20 hm7G_associated_SNPs_37742 0 0 0 0 1 RNF112 chr17:19316096 5'GT 19316096 Upstream 20bp 34740 chr9 130980945 130980945 1 + G A COAD 130980946 + 130980926 130980966 41 ATCGAGGCCGAGACCGACAGGGTCACCGGCACCAACAAGGG ATCGAGGCCGAGACCGACAAGGTCACCGGCACCAACAAGGG < 41bp 0.592193110147718 0.793209792654854 NA NA prediction 0.402033365014273 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130980946 chr9:130980945 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_37744 0 0 1 0 2 DNM1 chr9:130980861 3'AG 130980861 Downstream 85bp 34741 chr9 130980945 130980945 1 + G A COAD 130980946 + 130980926 130980966 41 ATCGAGGCCGAGACCGACAGGGTCACCGGCACCAACAAGGG ATCGAGGCCGAGACCGACAAGGTCACCGGCACCAACAAGGG < 41bp 0.592193110147718 0.793209792654854 NA NA prediction 0.402033365014273 Functional Gain - DNM1 ENSG00000106976 CDS Human protein_coding chr9:130980946 chr9:130980945 nonsynonymous SNV 0.994 4 20 hm7G_associated_SNPs_37744 0 0 1 0 2 DNM1 chr9:130981010 5'GT 130981010 Upstream 66bp 34742 chr20 61291851 61291851 1 + C T OV 61291852 + 61291832 61291872 41 CCGCTGCTTTCTTCACCGCCGTTCCCATCCTTGGTTACCCT CCGCTGCTTTCTTCACCGCTGTTCCCATCCTTGGTTACCCT < 41bp 0.52939548703277 0.730411331232426 NA NA prediction 0.402031688399313 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291852 chr20:61291851 synonymous SNV . 0 20 hm7G_associated_SNPs_37745 0 0 0 0 2 SLCO4A1 chr20:61291764 3'AG 61291764 Downstream 88bp 34743 chr20 61291851 61291851 1 + C T OV 61291852 + 61291832 61291872 41 CCGCTGCTTTCTTCACCGCCGTTCCCATCCTTGGTTACCCT CCGCTGCTTTCTTCACCGCTGTTCCCATCCTTGGTTACCCT < 41bp 0.52939548703277 0.730411331232426 NA NA prediction 0.402031688399313 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human protein_coding chr20:61291852 chr20:61291851 synonymous SNV . 0 20 hm7G_associated_SNPs_37745 0 0 0 0 2 SLCO4A1 chr20:61291885 5'GT 61291885 Upstream 35bp 34744 chr9 132982045 132982045 1 + G A BLCA 132982046 + 132982026 132982066 41 AGTTCATCCAGGCGCTGTCGGTGACCTCACGGGGAACCCTG AGTTCATCCAGGCGCTGTCAGTGACCTCACGGGGAACCCTG < 41bp 0.562833070733592 0.763847852307923 NA NA prediction 0.402029563148662 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132982046 chr9:132982045 synonymous SNV . 0 20 hm7G_associated_SNPs_37748 0 0 1 0 2 NCS1 chr9:132982004 3'AG 132982004 Downstream 42bp 34745 chr9 132982045 132982045 1 + G A BLCA 132982046 + 132982026 132982066 41 AGTTCATCCAGGCGCTGTCGGTGACCTCACGGGGAACCCTG AGTTCATCCAGGCGCTGTCAGTGACCTCACGGGGAACCCTG < 41bp 0.562833070733592 0.763847852307923 NA NA prediction 0.402029563148662 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132982046 chr9:132982045 synonymous SNV . 0 20 hm7G_associated_SNPs_37748 0 0 1 0 2 NCS1 chr9:132982082 5'GT 132982082 Upstream 38bp 34746 chr15 101606848 101606848 1 + C T rs41334650 101606849 + 101606829 101606869 41 GGTTTTGGTTGCTTAGGCGCGGTGGAGATGTTATCGTCATT GGTTTTGGTTGCTTAGGCGTGGTGGAGATGTTATCGTCATT < 41bp 0.53466951490493 0.735681552019763 NA NA prediction 0.402024074229667 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101606849 chr15:101606848 synonymous SNV . 0 20 hm7G_associated_SNPs_37749 0 0 0 0 2 LRRK1 chr15:101606845 3'AG 101606845 Downstream 4bp 34747 chr15 101606848 101606848 1 + C T rs41334650 101606849 + 101606829 101606869 41 GGTTTTGGTTGCTTAGGCGCGGTGGAGATGTTATCGTCATT GGTTTTGGTTGCTTAGGCGTGGTGGAGATGTTATCGTCATT < 41bp 0.53466951490493 0.735681552019763 NA NA prediction 0.402024074229667 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101606849 chr15:101606848 synonymous SNV . 0 20 hm7G_associated_SNPs_37749 0 0 0 0 2 LRRK1 chr15:101606946 5'GT 101606946 Upstream 99bp 34748 chr8 10102630 10102630 1 + G T LUSC 10102631 + 10102611 10102651 41 AAGGAATGGGATGTTTCTGGGGAGCTGAAAGGAAATTCTGG AAGGAATGGGATGTTTCTGTGGAGCTGAAAGGAAATTCTGG < 41bp 0.377527915946665 0.701011211274063 NA NA prediction 0.402022422548127 Functional Gain - MSRA ENSG00000175806 CDS Human protein_coding chr8:10102631 chr8:10102630 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37750 0 0 0 0 1 MSRA chr8:10102614 3'AG 10102614 Downstream 17bp 34749 chrX 152814999 152814999 1 + C T LUSC 152815000 + 152814980 152815020 41 TGCGCCACCTGGATGCCTGCGAGACCATGGGCAACGCCACA TGCGCCACCTGGATGCCTGTGAGACCATGGGCAACGCCACA < 41bp 0.556350198268059 0.757361147182751 NA NA prediction 0.402021897829385 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152815000 chrX:152814999 synonymous SNV . 0 20 hm7G_associated_SNPs_37751 0 0 0 0 1 ATP2B3 chrX:152814955 3'AG 152814955 Downstream 45bp 34750 chr15 42684908 42684908 1 + G A rs141934227 42684909 + 42684889 42684929 41 GTCACGCCTACTCTGTCACGGGGCTGGATGAGGTAAGCCTG GTCACGCCTACTCTGTCACAGGGCTGGATGAGGTAAGCCTG < 41bp 0.49533403770822 0.701010541280067 NA NA prediction 0.402021082560133 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42684909 chr15:42684908 synonymous SNV . 0 20 hm7G_associated_SNPs_37752 1 0 0 0 2 CAPN3 chr15:42684837 3'AG 42684837 Downstream 72bp 34751 chr15 42684908 42684908 1 + G A rs141934227 42684909 + 42684889 42684929 41 GTCACGCCTACTCTGTCACGGGGCTGGATGAGGTAAGCCTG GTCACGCCTACTCTGTCACAGGGCTGGATGAGGTAAGCCTG < 41bp 0.49533403770822 0.701010541280067 NA NA prediction 0.402021082560133 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42684909 chr15:42684908 synonymous SNV . 0 20 hm7G_associated_SNPs_37752 1 0 0 0 2 CAPN3 chr15:42684920 5'GT 42684920 Upstream 13bp 34752 chr5 63803626 63803626 1 + G A SKCM 63803627 + 63803607 63803647 41 GTCAGCTGCCCCTCACTCCGGGCGGAAATGCACAAGACAAG GTCAGCTGCCCCTCACTCCAGGCGGAAATGCACAAGACAAG < 41bp 0.495396862090847 0.701010213626554 NA NA prediction 0.402020427253109 Functional Gain - RGS7BP ENSG00000186479 CDS Human protein_coding chr5:63803627 chr5:63803626 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_37753 0 0 0 0 1 RGS7BP chr5:63803538 3'AG 63803538 Downstream 89bp 34753 chr8 27995281 27995281 1 + G A UCEC 27995282 + 27995262 27995302 41 TCCTACCCTGGTGATTCGTGGGACCGGGCTTTATGAGCTTT TCCTACCCTGGTGATTCGTAGGACCGGGCTTTATGAGCTTT < 41bp 0.521299764177424 0.722309755491627 NA NA prediction 0.402019982628407 Functional Gain - ELP3 ENSG00000134014 CDS Human protein_coding chr8:27995282 chr8:27995281 nonsynonymous SNV 0.945 2 20 hm7G_associated_SNPs_37754 0 0 1 0 1 ELP3 chr8:27995215 3'AG 27995215 Downstream 67bp 34754 chr19 829590 829590 1 + G A STAD 829591 + 829571 829611 41 GGTTAGCACCGTGGTGCTGGGTGCCTATGACCTGAGGCGGC GGTTAGCACCGTGGTGCTGAGTGCCTATGACCTGAGGCGGC < 41bp 0.563609287232805 0.764618413011339 NA NA prediction 0.402018251557068 Functional Gain - AZU1 ENSG00000172232 CDS Human protein_coding chr19:829591 chr19:829590 nonsynonymous SNV 0.854 4 20 hm7G_associated_SNPs_37755 0 0 1 0 1 AZU1 chr19:829562 3'AG 829562 Downstream 29bp 34755 chr17 41926022 41926022 1 + G A LGG 41926023 + 41926003 41926043 41 GAAGAGCTGAGGGACCACCGGAAGTACTGGTGCAGGAAGGG GAAGAGCTGAGGGACCACCAGAAGTACTGGTGCAGGAAGGG < 41bp 0.556895827977318 0.757904914314063 NA NA prediction 0.402018172673491 Functional Gain - CD300LG ENSG00000161649 CDS Human protein_coding chr17:41926023 chr17:41926022 nonsynonymous SNV 0.011 0 20 hm7G_associated_SNPs_37756 0 0 0 0 1 CD300LG chr17:41925926 3'AG 41925926 Downstream 97bp 34756 chr16 601650 601650 1 + C T CESC 601651 + 601631 601671 41 GTGTCTTCTGGATGGAGTACGGCGACTTTGTCAGGTATCGG GTGTCTTCTGGATGGAGTATGGCGACTTTGTCAGGTATCGG < 41bp 0.51926343273147 0.720271408573735 NA NA prediction 0.402015951684531 Functional Gain - CAPN15 ENSG00000103326 CDS Human protein_coding chr16:601651 chr16:601650 synonymous SNV . 0 20 hm7G_associated_SNPs_37757 0 0 1 0 1 CAPN15 chr16:601664 5'GT 601664 Upstream 15bp 34757 chr18 51813701 51813701 1 + G T LUAD 51813702 + 51813682 51813722 41 GTGAGATTAATAATCCGTCGGTATTCCTCTGAGAAGCACTA GTGAGATTAATAATCCGTCTGTATTCCTCTGAGAAGCACTA < 41bp 0.362710114884837 0.701006791588483 NA NA prediction 0.402013583176967 Functional Gain - POLI ENSG00000101751 CDS Human protein_coding chr18:51813702 chr18:51813701 nonsynonymous SNV 0.976 4 20 hm7G_associated_SNPs_37758 0 0 1 0 1 POLI chr18:51813781 5'GT 51813781 Upstream 81bp 34758 chr19 1082880 1082880 1 + C T rs147326222 1082881 + 1082861 1082901 41 TCCGCCTCTACCACGAGCTCGTAGGGCTGGCCAAGGACAGC TCCGCCTCTACCACGAGCTTGTAGGGCTGGCCAAGGACAGC < 41bp 0.513727378837782 0.71473215789786 NA NA prediction 0.402009558120157 Functional Gain - ARHGAP45 ENSG00000180448 CDS Human protein_coding chr19:1082881 chr19:1082880 synonymous SNV . 0 20 hm7G_associated_SNPs_37759 0 0 0 0 1 ARHGAP45 chr19:1082839 3'AG 1082839 Downstream 42bp 34759 chr8 22464524 22464524 1 + C T COAD 22464525 + 22464505 22464545 41 AATGCTGTCAAGGTGCAAACGCTCTCCAACCAGGTATTCAT AATGCTGTCAAGGTGCAAATGCTCTCCAACCAGGTATTCAT < 41bp 0.550302795124012 0.751307315084744 NA NA prediction 0.402009039921464 Functional Gain - CCAR2 ENSG00000158941 CDS Human protein_coding chr8:22464525 chr8:22464524 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37761 0 0 0 0 1 CCAR2 chr8:22464537 5'GT 22464537 Upstream 14bp 34760 chr2 177053619 177053619 1 - C T rs370320082 177053618 - 177053598 177053638 41 GAGCCACGGGCCGGGCGTCGGAGCGGCAGAACTTGGGTGCC GAGCCACGGGCCGGGCGTCAGAGCGGCAGAACTTGGGTGCC < 41bp 0.493982511671874 0.701004352335177 NA NA prediction 0.402008704670355 Functional Gain - HOXD1 ENSG00000128645 CDS Human protein_coding chr2:177053618 chr2:177053619 synonymous SNV . 0 20 hm7G_associated_SNPs_37762 0 0 0 0 1 HOXD1 chr2:177053542 5'GT 177053542 Upstream 78bp 34761 chr8 42591710 42591710 1 + G T LUAD 42591711 + 42591691 42591731 41 TAGTGTCAGTAACAGGCTCGGTTCTGATTTTTACCCCTGCT TAGTGTCAGTAACAGGCTCTGTTCTGATTTTTACCCCTGCT < 41bp 0.395750409353698 0.701002866353133 NA NA prediction 0.402005732706266 Functional Gain - CHRNB3 ENSG00000147432 CDS Human protein_coding chr8:42591711 chr8:42591710 synonymous SNV . 0 20 hm7G_associated_SNPs_37764 0 0 0 0 1 CHRNB3 chr8:42591627 3'AG 42591627 Downstream 84bp 34762 chr12 266233 266233 1 + C T STAD 266234 + 266214 266254 41 TCTCCAGCATGGAGCTGGACGAGGCCCTGCGCAAGTTCCAG TCTCCAGCATGGAGCTGGATGAGGCCCTGCGCAAGTTCCAG < 41bp 0.487338650513183 0.701002475687852 NA NA prediction 0.402004951375704 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:266234 chr12:266233 synonymous SNV . 0 20 hm7G_associated_SNPs_37765 0 0 0 0 2 IQSEC3 chr12:266191 3'AG 266191 Downstream 43bp 34763 chr12 266233 266233 1 + C T STAD 266234 + 266214 266254 41 TCTCCAGCATGGAGCTGGACGAGGCCCTGCGCAAGTTCCAG TCTCCAGCATGGAGCTGGATGAGGCCCTGCGCAAGTTCCAG < 41bp 0.487338650513183 0.701002475687852 NA NA prediction 0.402004951375704 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:266234 chr12:266233 synonymous SNV . 0 20 hm7G_associated_SNPs_37765 0 0 0 0 2 IQSEC3 chr12:266313 5'GT 266313 Upstream 81bp 34764 chr5 65372200 65372200 1 + C T BLCA 65372201 + 65372181 65372221 41 TTAGCATATCAGGTGGTGTCGGGGGTAGAGGAAACCCATTC TTAGCATATCAGGTGGTGTTGGGGGTAGAGGAAACCCATTC < 41bp 0.541448525959112 0.742450772941822 NA NA prediction 0.40200449396542 Functional Gain - ERBIN ENSG00000112851 CDS Human protein_coding chr5:65372201 chr5:65372200 synonymous SNV . 0 20 hm7G_associated_SNPs_37767 0 0 1 0 2 ERBIN chr5:65372144 3'AG 65372144 Downstream 57bp 34765 chr5 65372200 65372200 1 + C T BLCA 65372201 + 65372181 65372221 41 TTAGCATATCAGGTGGTGTCGGGGGTAGAGGAAACCCATTC TTAGCATATCAGGTGGTGTTGGGGGTAGAGGAAACCCATTC < 41bp 0.541448525959112 0.742450772941822 NA NA prediction 0.40200449396542 Functional Gain - ERBIN ENSG00000112851 CDS Human protein_coding chr5:65372201 chr5:65372200 synonymous SNV . 0 20 hm7G_associated_SNPs_37767 0 0 1 0 2 ERBIN chr5:65372236 5'GT 65372236 Upstream 37bp 34766 chr19 55054613 55054613 1 + G A rs530757640 55054614 + 55054594 55054634 41 TGGCAAACACAGAGCCCACGGAAGGCCAACGGACGGATGAA TGGCAAACACAGAGCCCACAGAAGGCCAACGGACGGATGAA < 41bp 0.489101067525833 0.701002042734456 NA NA prediction 0.402004085468911 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55054614 chr19:55054613 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_37769 0 0 0 0 2 KIR3DX1 chr19:55054585 3'AG 55054585 Downstream 29bp 34767 chr19 55054613 55054613 1 + G A rs530757640 55054614 + 55054594 55054634 41 TGGCAAACACAGAGCCCACGGAAGGCCAACGGACGGATGAA TGGCAAACACAGAGCCCACAGAAGGCCAACGGACGGATGAA < 41bp 0.489101067525833 0.701002042734456 NA NA prediction 0.402004085468911 Functional Gain - KIR3DX1 ENSG00000104970 CDS Human protein_coding chr19:55054614 chr19:55054613 nonsynonymous SNV 0.006 0 20 hm7G_associated_SNPs_37769 0 0 0 0 2 KIR3DX1 chr19:55054637 5'GT 55054637 Upstream 25bp 34768 chr1 247587244 247587244 1 + C T LUSC 247587245 + 247587225 247587265 41 GAGTGTGAGCCTCAACAAACGCTACACACGACTGCGTCTCA GAGTGTGAGCCTCAACAAATGCTACACACGACTGCGTCTCA < 41bp 0.546172989406031 0.747173415752366 NA NA prediction 0.402000852692668 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247587245 chr1:247587244 nonsynonymous SNV 0.871 5 20 hm7G_associated_SNPs_37772 0 0 0 0 1 NLRP3 chr1:247587149 3'AG 247587149 Downstream 96bp 34769 chr7 4824582 4824582 1 + C T STAD 4824583 + 4824563 4824603 41 CCACTCTGTCGGTGATCTCCGCCACCTCCTCTGCCGGCCGC CCACTCTGTCGGTGATCTCTGCCACCTCCTCTGCCGGCCGC < 41bp 0.526973425666188 0.727972770107818 NA NA prediction 0.401998688883261 Functional Gain - AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824583 chr7:4824582 synonymous SNV . 0 20 hm7G_associated_SNPs_37773 0 0 1 0 2 AP5Z1 chr7:4824539 3'AG 4824539 Downstream 44bp 34770 chr7 4824582 4824582 1 + C T STAD 4824583 + 4824563 4824603 41 CCACTCTGTCGGTGATCTCCGCCACCTCCTCTGCCGGCCGC CCACTCTGTCGGTGATCTCTGCCACCTCCTCTGCCGGCCGC < 41bp 0.526973425666188 0.727972770107818 NA NA prediction 0.401998688883261 Functional Gain - AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4824583 chr7:4824582 synonymous SNV . 0 20 hm7G_associated_SNPs_37773 0 0 1 0 2 AP5Z1 chr7:4824679 5'GT 4824679 Upstream 98bp 34771 chr11 65300225 65300225 1 + C T UCEC 65300226 + 65300206 65300246 41 CCCAGATCTTCCCCCACGTCGTACATGGCTTCCTGGACACC CCCAGATCTTCCCCCACGTTGTACATGGCTTCCTGGACACC < 41bp 0.496331379443451 0.700998009782563 NA NA prediction 0.401996019565126 Functional Gain - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65300226 chr11:65300225 synonymous SNV . 0 20 hm7G_associated_SNPs_37775 0 0 1 0 2 SCYL1 chr11:65300163 3'AG 65300163 Downstream 63bp 34772 chr11 65300225 65300225 1 + C T UCEC 65300226 + 65300206 65300246 41 CCCAGATCTTCCCCCACGTCGTACATGGCTTCCTGGACACC CCCAGATCTTCCCCCACGTTGTACATGGCTTCCTGGACACC < 41bp 0.496331379443451 0.700998009782563 NA NA prediction 0.401996019565126 Functional Gain - SCYL1 ENSG00000142186 CDS Human protein_coding chr11:65300226 chr11:65300225 synonymous SNV . 0 20 hm7G_associated_SNPs_37775 0 0 1 0 2 SCYL1 chr11:65300276 5'GT 65300276 Upstream 52bp 34773 chr15 72104776 72104776 1 + G A COAD 72104777 + 72104757 72104797 41 ACAGCATCCATGAGACCTCGGCTCGCCTACTCTTCATGGCC ACAGCATCCATGAGACCTCAGCTCGCCTACTCTTCATGGCC < 41bp 0.473550611102659 0.700997635105588 NA NA prediction 0.401995270211175 Functional Gain - NR2E3 ENSG00000031544 ncRNA_exonic Human other chr15:72104777 chr15:72104776 . . 0 20 hm7G_associated_SNPs_37776 0 0 0 0 1 NR2E3 chr15:72104851 5'GT 72104851 Upstream 76bp 34774 chr1 156849848 156849848 1 + C T PAAD 156849849 + 156849829 156849869 41 GCCCGAGAGCATCCTGTACCGTAAGTTCACCACCGAGAGCG GCCCGAGAGCATCCTGTACTGTAAGTTCACCACCGAGAGCG < 41bp 0.508208378482262 0.709205006136548 NA NA prediction 0.401993255308572 Functional Gain - NTRK1 ENSG00000198400 CDS Human protein_coding chr1:156849849 chr1:156849848 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_37777 0 0 1 0 1 NTRK1 chr1:156849791 3'AG 156849791 Downstream 58bp 34775 chr19 48981790 48981790 1 + G T HNSC 48981791 + 48981771 48981811 41 TGGTGGAGGGAAACCACATGGTGTACCGGATCTCGGCCCCC TGGTGGAGGGAAACCACATTGTGTACCGGATCTCGGCCCCC < 41bp 0.345743552339371 0.700996446401858 NA NA prediction 0.401992892803717 Functional Gain - CYTH2 ENSG00000105443 CDS Human protein_coding chr19:48981791 chr19:48981790 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_37778 0 0 1 0 2 CYTH2 chr19:48981695 3'AG 48981695 Downstream 96bp 34776 chr19 48981790 48981790 1 + G T HNSC 48981791 + 48981771 48981811 41 TGGTGGAGGGAAACCACATGGTGTACCGGATCTCGGCCCCC TGGTGGAGGGAAACCACATTGTGTACCGGATCTCGGCCCCC < 41bp 0.345743552339371 0.700996446401858 NA NA prediction 0.401992892803717 Functional Gain - CYTH2 ENSG00000105443 CDS Human protein_coding chr19:48981791 chr19:48981790 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_37778 0 0 1 0 2 CYTH2 chr19:48981849 5'GT 48981849 Upstream 60bp 34777 chr11 552231 552231 1 + C T COAD 552232 + 552212 552252 41 CTGGAGGGAACATGGCGTGCGGTGGGTGTCCCTCCAGCTCT CTGGAGGGAACATGGCGTGTGGTGGGTGTCCCTCCAGCTCT < 41bp 0.529597545838862 0.730593762569165 NA NA prediction 0.401992433460606 Functional Gain - LRRC56 ENSG00000161328 CDS Human protein_coding chr11:552232 chr11:552231 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_37779 0 0 0 0 1 LRRC56 chr11:552232 5'GT 552232 Upstream 2bp 34778 chr2 29249783 29249783 1 + G A COAD 29249784 + 29249764 29249804 41 AGCTGTGCTGGAGCAGATCGGCGCTGAGAAGCTTCTCTCGG AGCTGTGCTGGAGCAGATCAGCGCTGAGAAGCTTCTCTCGG < 41bp 0.488017212302548 0.700995332274201 NA NA prediction 0.401990664548402 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29249784 chr2:29249783 nonsynonymous SNV 0.848 3 20 hm7G_associated_SNPs_37782 0 0 0 0 2 TOGARAM2 chr2:29249719 3'AG 29249719 Downstream 65bp 34779 chr2 29249783 29249783 1 + G A COAD 29249784 + 29249764 29249804 41 AGCTGTGCTGGAGCAGATCGGCGCTGAGAAGCTTCTCTCGG AGCTGTGCTGGAGCAGATCAGCGCTGAGAAGCTTCTCTCGG < 41bp 0.488017212302548 0.700995332274201 NA NA prediction 0.401990664548402 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29249784 chr2:29249783 nonsynonymous SNV 0.848 3 20 hm7G_associated_SNPs_37782 0 0 0 0 2 TOGARAM2 chr2:29249877 5'GT 29249877 Upstream 95bp 34780 chr20 44678355 44678355 1 + G A BLCA 44678356 + 44678336 44678376 41 CCAGCTGAAGGCGGGGAAGGGCCTGACCATCGTGGGCTCTG CCAGCTGAAGGCGGGGAAGAGCCTGACCATCGTGGGCTCTG < 41bp 0.483527096406142 0.700994748944936 NA NA prediction 0.401989497889871 Functional Gain - SLC12A5 ENSG00000124140 CDS Human protein_coding chr20:44678356 chr20:44678355 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37783 0 0 0 0 1 SLC12A5 chr20:44678261 3'AG 44678261 Downstream 95bp 34781 chr11 46748106 46748106 1 + C T STAD 46748107 + 46748087 46748127 41 AGGACTCAGACAGGGCCATCGAAGGGCGTACCGCCACCAGT AGGACTCAGACAGGGCCATTGAAGGGCGTACCGCCACCAGT < 41bp 0.54646034861312 0.747453250757979 NA NA prediction 0.401985804289718 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46748107 chr11:46748106 synonymous SNV . 0 20 hm7G_associated_SNPs_37784 0 0 1 0 2 F2 chr11:46748048 3'AG 46748048 Downstream 59bp 34782 chr11 46748106 46748106 1 + C T STAD 46748107 + 46748087 46748127 41 AGGACTCAGACAGGGCCATCGAAGGGCGTACCGCCACCAGT AGGACTCAGACAGGGCCATTGAAGGGCGTACCGCCACCAGT < 41bp 0.54646034861312 0.747453250757979 NA NA prediction 0.401985804289718 Functional Gain - F2 ENSG00000180210 CDS Human protein_coding chr11:46748107 chr11:46748106 synonymous SNV . 0 20 hm7G_associated_SNPs_37784 0 0 1 0 2 F2 chr11:46748176 5'GT 46748176 Upstream 71bp 34783 chr2 231090582 231090582 1 + G A KIRC 231090583 + 231090563 231090603 41 GCCCAGCAGGGCCAGCAGGGGCAGATGGCAAGTGGAGACAG GCCCAGCAGGGCCAGCAGGAGCAGATGGCAAGTGGAGACAG < 41bp 0.50270297646421 0.703694917971068 NA NA prediction 0.401983883013717 Functional Gain - SP140 ENSG00000079263 CDS Human protein_coding chr2:231090583 chr2:231090582 nonsynonymous SNV 0.010 1 20 hm7G_associated_SNPs_37785 0 0 0 0 1 SP140 chr2:231090618 5'GT 231090618 Upstream 37bp 34784 chr2 233409145 233409145 1 + G T STAD 233409146 + 233409126 233409166 41 TGGCCCCGGCAGCTGTGCAGGACACCCAGTCCCGGCTACAG TGGCCCCGGCAGCTGTGCATGACACCCAGTCCCGGCTACAG < 41bp 0.348201474590978 0.700991168359968 NA NA prediction 0.401982336719935 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233409146 chr2:233409145 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_37786 0 0 0 0 1 CHRNG chr2:233409077 3'AG 233409077 Downstream 69bp 34785 chr14 23848249 23848249 1 + C T COAD 23848250 + 23848230 23848270 41 TGGCCCCCAGGACTTCCTGCGCTGTGTCAGTGCCATCATCA TGGCCCCCAGGACTTCCTGTGCTGTGTCAGTGCCATCATCA < 41bp 0.539844395001054 0.740834902065497 NA NA prediction 0.401981014128886 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848250 chr14:23848249 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_37787 0 0 0 0 2 CMTM5 chr14:23848240 3'AG 23848240 Downstream 10bp 34786 chr14 23848249 23848249 1 + C T COAD 23848250 + 23848230 23848270 41 TGGCCCCCAGGACTTCCTGCGCTGTGTCAGTGCCATCATCA TGGCCCCCAGGACTTCCTGTGCTGTGTCAGTGCCATCATCA < 41bp 0.539844395001054 0.740834902065497 NA NA prediction 0.401981014128886 Functional Gain - CMTM5 ENSG00000166091 CDS Human protein_coding chr14:23848250 chr14:23848249 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_37787 0 0 0 0 2 CMTM5 chr14:23848332 5'GT 23848332 Upstream 84bp 34787 chr4 187201531 187201531 1 + C T rs149052026 187201532 + 187201512 187201552 41 CAGCCCAAGCATCCTGCAACGAAGGGAAGTAAGCCATATGA CAGCCCAAGCATCCTGCAATGAAGGGAAGTAAGCCATATGA < 41bp 0.498177005362056 0.700990320391653 NA NA prediction 0.401980640783305 Functional Gain - F11 ENSG00000088926 CDS Human protein_coding chr4:187201532 chr4:187201531 synonymous SNV . 0 20 hm7G_associated_SNPs_37788 0 0 1 0 1 F11 chr4:187201539 5'GT 187201539 Upstream 9bp 34788 chr2 220413967 220413967 1 + G A OV 220413968 + 220413948 220413988 41 CGGAAAAAGAGACCTCCTCGGGCTCCCCTCAGAGGTCCCCG CGGAAAAAGAGACCTCCTCAGGCTCCCCTCAGAGGTCCCCG < 41bp 0.601184615378572 0.802173893727703 NA NA prediction 0.401978556698262 Functional Gain - TMEM198 ENSG00000188760 CDS Human protein_coding chr2:220413968 chr2:220413967 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_37790 0 0 1 0 1 TMEM198 chr2:220413874 3'AG 220413874 Downstream 94bp 34789 chr17 33326328 33326328 1 + G A SKCM 33326329 + 33326309 33326349 41 TCACACTCCCCTCCCAGGCGGCATGATGTCAATCTTCCTCA TCACACTCCCCTCCCAGGCAGCATGATGTCAATCTTCCTCA < 41bp 0.480891453374248 0.700988945735081 NA NA prediction 0.401977891470163 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33326329 chr17:33326328 nonsynonymous SNV 0.970 4 20 hm7G_associated_SNPs_37792 0 0 1 0 1 LIG3 chr17:33326326 3'AG 33326326 Downstream 3bp 34790 chr12 668483 668483 1 + C T LGG 668484 + 668464 668504 41 ACTGGGAGGTGAATGGGTTCGGGCTGCTTGGCATCTACAAG ACTGGGAGGTGAATGGGTTTGGGCTGCTTGGCATCTACAAG < 41bp 0.54798861767827 0.748977111331147 NA NA prediction 0.401976987305752 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:668484 chr12:668483 synonymous SNV . 0 20 hm7G_associated_SNPs_37793 0 0 0 0 1 B4GALNT3 chr12:668461 3'AG 668461 Downstream 23bp 34791 chr3 44871509 44871509 1 + C T rs74491662 44871510 + 44871490 44871530 41 ATCCAGGAGCTAAGAACATCGGTCTGTGAGAAAACAGAAAC ATCCAGGAGCTAAGAACATTGGTCTGTGAGAAAACAGAAAC < 41bp 0.50870558827304 0.709693963917034 NA NA prediction 0.401976751287989 Functional Gain - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44871510 chr3:44871509 nonsynonymous SNV 0.541 2 20 hm7G_associated_SNPs_37794 0 0 1 0 2 KIF15 chr3:44871463 3'AG 44871463 Downstream 47bp 34792 chr3 44871509 44871509 1 + C T rs74491662 44871510 + 44871490 44871530 41 ATCCAGGAGCTAAGAACATCGGTCTGTGAGAAAACAGAAAC ATCCAGGAGCTAAGAACATTGGTCTGTGAGAAAACAGAAAC < 41bp 0.50870558827304 0.709693963917034 NA NA prediction 0.401976751287989 Functional Gain - KIF15 ENSG00000163808 CDS Human protein_coding chr3:44871510 chr3:44871509 nonsynonymous SNV 0.541 2 20 hm7G_associated_SNPs_37794 0 0 1 0 2 KIF15 chr3:44871567 5'GT 44871567 Upstream 59bp 34793 chr4 57832876 57832876 1 - G A PCPG 57832875 - 57832855 57832895 41 AGTCAGCTTGGTTTACAGTCGTGGCTTCCAACATCCTCCCT AGTCAGCTTGGTTTACAGTTGTGGCTTCCAACATCCTCCCT < 41bp 0.522550039862407 0.723535008183559 NA NA prediction 0.401969936642304 Functional Gain - NOA1 ENSG00000084092 CDS Human protein_coding chr4:57832875 chr4:57832876 synonymous SNV . 0 20 hm7G_associated_SNPs_37797 0 0 1 0 2 NOA1 chr4:57832786 5'GT 57832786 Upstream 91bp 34794 chr4 57832876 57832876 1 - G A PCPG 57832875 - 57832855 57832895 41 AGTCAGCTTGGTTTACAGTCGTGGCTTCCAACATCCTCCCT AGTCAGCTTGGTTTACAGTTGTGGCTTCCAACATCCTCCCT < 41bp 0.522550039862407 0.723535008183559 NA NA prediction 0.401969936642304 Functional Gain - NOA1 ENSG00000084092 CDS Human protein_coding chr4:57832875 chr4:57832876 synonymous SNV . 0 20 hm7G_associated_SNPs_37797 0 0 1 0 2 NOA1 chr4:57832902 3'AG 57832902 Downstream 27bp 34795 chr22 25016305 25016305 1 + G A rs190997250 25016306 + 25016286 25016326 41 TCTCCCCAGGGGGGCTGTCGGTGGCGGTGCCTGGGGAGATC TCTCCCCAGGGGGGCTGTCAGTGGCGGTGCCTGGGGAGATC < 41bp 0.553612244611087 0.754597046813655 NA NA prediction 0.401969604405136 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25016306 chr22:25016305 synonymous SNV . 0 20 hm7G_associated_SNPs_37798 0 0 1 0 1 GGT1 chr22:25016295 3'AG 25016295 Downstream 11bp 34796 chr3 132086622 132086622 1 + C T LGG 132086623 + 132086603 132086643 41 ACTACTGTTTATCCACATTCGCCGTGGACTCTGCTGGCAGA ACTACTGTTTATCCACATTTGCCGTGGACTCTGCTGGCAGA < 41bp 0.526259318490332 0.727243176338815 NA NA prediction 0.401967715696966 Functional Gain - ACPP ENSG00000014257 CDS Human protein_coding chr3:132086623 chr3:132086622 nonsynonymous SNV 0.216 2 20 hm7G_associated_SNPs_37799 0 0 0 0 1 ACPP chr3:132086548 3'AG 132086548 Downstream 75bp 34797 chr19 1220394 1220394 1 + G A UCEC 1220395 + 1220375 1220415 41 CTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCC CTTCTGTCAGCTGATTGACAGCCTGGAGTACCTGCATAGCC < 41bp 0.550777532821769 0.751760921410285 NA NA prediction 0.401966777177032 Functional Gain - STK11 ENSG00000118046 CDS Human protein_coding chr19:1220395 chr19:1220394 nonsynonymous SNV 0.590 4 20 hm7G_associated_SNPs_37800 0 0 1 0 1 STK11 chr19:1220372 3'AG 1220372 Downstream 23bp 34798 chr11 68204445 68204445 1 + C T rs3736229 68204446 + 68204426 68204466 41 CCTTCCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGT CCTTCCCCGACTGTATCGATGGCTCCGACGAGCTCATGTGT < 41bp 0.513830755403388 0.714813794115344 NA NA prediction 0.401966077423912 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204446 chr11:68204445 synonymous SNV . 0 20 hm7G_associated_SNPs_37801 1 0 1 0 2 LRP5 chr11:68204357 3'AG 68204357 Downstream 89bp 34799 chr11 68204445 68204445 1 + C T rs3736229 68204446 + 68204426 68204466 41 CCTTCCCCGACTGTATCGACGGCTCCGACGAGCTCATGTGT CCTTCCCCGACTGTATCGATGGCTCCGACGAGCTCATGTGT < 41bp 0.513830755403388 0.714813794115344 NA NA prediction 0.401966077423912 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68204446 chr11:68204445 synonymous SNV . 0 20 hm7G_associated_SNPs_37801 1 0 1 0 2 LRP5 chr11:68204467 5'GT 68204467 Upstream 23bp 34800 chr22 31524468 31524468 1 + G A UCEC 31524469 + 31524449 31524489 41 CACTGCAGTGCCAAGAAACGGAAGCCAGCTTGGACAGACCG CACTGCAGTGCCAAGAAACAGAAGCCAGCTTGGACAGACCG < 41bp 0.525671586089948 0.726654169868572 NA NA prediction 0.401965167557249 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31524469 chr22:31524468 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_37802 0 0 0 0 1 INPP5J chr22:31524457 3'AG 31524457 Downstream 12bp 34801 chr12 109826595 109826595 1 + C T GBM 109826596 + 109826576 109826616 41 TATTGGACGCGTACACCAGCGAATCTGCCTTTGTCGACAAC TATTGGACGCGTACACCAGTGAATCTGCCTTTGTCGACAAC < 41bp 0.531855435135688 0.732837562266946 NA NA prediction 0.401964254262515 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109826596 chr12:109826595 synonymous SNV . 0 20 hm7G_associated_SNPs_37803 0 0 0 0 1 MYO1H chr12:109826649 5'GT 109826649 Upstream 55bp 34802 chr1 17668547 17668547 1 + C T SKCM 17668548 + 17668528 17668568 41 ACTTCTACGTGGAGGCCCTCGCTTTCCCGGACACCGACTTC ACTTCTACGTGGAGGCCCTTGCTTTCCCGGACACCGACTTC < 41bp 0.548669453385646 0.749649538631882 NA NA prediction 0.401960170492474 Functional Gain - PADI4 ENSG00000159339 CDS Human protein_coding chr1:17668548 chr1:17668547 synonymous SNV . 0 20 hm7G_associated_SNPs_37806 0 0 0 0 1 PADI4 chr1:17668616 5'GT 17668616 Upstream 70bp 34803 chr2 217293467 217293467 1 + C T rs151159565 217293468 + 217293448 217293488 41 CTGAAGTGGACCCCAAGCTCGTGTCTAATCTGATGCCCTTT CTGAAGTGGACCCCAAGCTTGTGTCTAATCTGATGCCCTTT < 41bp 0.497049957064785 0.700979932451262 NA NA prediction 0.401959864902524 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217293468 chr2:217293467 synonymous SNV . 0 20 hm7G_associated_SNPs_37807 0 0 1 1 1 SMARCAL1 chr2:217293505 5'GT 217293505 Upstream 39bp 34804 chr5 176295907 176295907 1 + C T STAD 176295908 + 176295888 176295928 41 ACACGGCCAACTACACCTGCGTGGCCAAGAACATCGTGGCA ACACGGCCAACTACACCTGTGTGGCCAAGAACATCGTGGCA < 41bp 0.514813029133904 0.715792061535172 NA NA prediction 0.401958064802534 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295908 chr5:176295907 synonymous SNV . 0 20 hm7G_associated_SNPs_37808 0 0 0 0 1 UNC5A chr5:176295965 5'GT 176295965 Upstream 59bp 34805 chr10 124249002 124249002 1 + G A SKCM 124249003 + 124248983 124249023 41 GTTTATTGTGTCGGAAGATGGACTGATCGTGACAAATGCCC GTTTATTGTGTCGGAAGATAGACTGATCGTGACAAATGCCC < 41bp 0.535373631941101 0.736350374626783 NA NA prediction 0.401953485371364 Functional Gain - HTRA1 ENSG00000166033 CDS Human protein_coding chr10:124249003 chr10:124249002 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_37813 0 0 0 0 1 HTRA1 chr10:124248938 3'AG 124248938 Downstream 65bp 34806 chr5 134029591 134029591 1 + C T UCEC 134029592 + 134029572 134029612 41 AGTGGGAGCCCTGAAACCACGAGAGGAACCAAACCACAGGT AGTGGGAGCCCTGAAACCATGAGAGGAACCAAACCACAGGT < 41bp 0.52440791352307 0.725384309355382 NA NA prediction 0.401952791664623 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134029592 chr5:134029591 stopgain 0.998 1 20 hm7G_associated_SNPs_37815 0 0 1 0 1 SEC24A chr5:134029623 5'GT 134029623 Upstream 33bp 34807 chr13 51922467 51922467 1 + C T LUAD 51922468 + 51922448 51922488 41 ACACCCCCCTGAGCCACATCGAGCCACACCTCACAGCCAGC ACACCCCCCTGAGCCACATTGAGCCACACCTCACAGCCAGC < 41bp 0.54098144977603 0.741956623717809 NA NA prediction 0.401950347883559 Functional Gain - SERPINE3 ENSG00000253309 CDS Human protein_coding chr13:51922468 chr13:51922467 synonymous SNV . 0 20 hm7G_associated_SNPs_37817 0 0 0 0 1 SERPINE3 chr13:51922547 5'GT 51922547 Upstream 81bp 34808 chr11 134212819 134212819 1 + G T UCEC 134212820 + 134212800 134212840 41 ACCGCCTGCTGAAGATGAAGGCCTGTGGCTTGAACACCCTC ACCGCCTGCTGAAGATGAATGCCTGTGGCTTGAACACCCTC < 41bp 0.360829965151357 0.70097443040978 NA NA prediction 0.40194886081956 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134212820 chr11:134212819 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_37818 0 0 0 0 1 GLB1L2 chr11:134212845 5'GT 134212845 Upstream 27bp 34809 chr11 118963677 118963677 1 + C T COAD 118963678 + 118963658 118963698 41 GAGGAGTCTGGAGTCTAGACGGCTCAGATAGCATACAAGAG GAGGAGTCTGGAGTCTAGATGGCTCAGATAGCATACAAGAG < 41bp 0.533616903967735 0.734588215598491 NA NA prediction 0.401942623261512 Functional Gain - HMBS ENSG00000256269 CDS Human protein_coding chr11:118963678 chr11:118963677 synonymous SNV . 0 20 hm7G_associated_SNPs_37821 0 0 1 0 2 HMBS chr11:118963645 3'AG 118963645 Downstream 33bp 34810 chr11 118963677 118963677 1 + C T COAD 118963678 + 118963658 118963698 41 GAGGAGTCTGGAGTCTAGACGGCTCAGATAGCATACAAGAG GAGGAGTCTGGAGTCTAGATGGCTCAGATAGCATACAAGAG < 41bp 0.533616903967735 0.734588215598491 NA NA prediction 0.401942623261512 Functional Gain - HMBS ENSG00000256269 CDS Human protein_coding chr11:118963678 chr11:118963677 synonymous SNV . 0 20 hm7G_associated_SNPs_37821 0 0 1 0 2 HMBS chr11:118963731 5'GT 118963731 Upstream 55bp 34811 chr12 101433760 101433760 1 + C T UCEC 101433761 + 101433741 101433781 41 TAGAAGTAAAAACTCCATTCGAACCCATGGAGCAGAAAACC TAGAAGTAAAAACTCCATTTGAACCCATGGAGCAGAAAACC < 41bp 0.53864271155778 0.739613231255524 NA NA prediction 0.401941039395488 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101433761 chr12:101433760 stopgain 0.998 1 20 hm7G_associated_SNPs_37822 0 0 0 0 2 ANO4 chr12:101433733 3'AG 101433733 Downstream 28bp 34812 chr12 101433760 101433760 1 + C T UCEC 101433761 + 101433741 101433781 41 TAGAAGTAAAAACTCCATTCGAACCCATGGAGCAGAAAACC TAGAAGTAAAAACTCCATTTGAACCCATGGAGCAGAAAACC < 41bp 0.53864271155778 0.739613231255524 NA NA prediction 0.401941039395488 Functional Gain - ANO4 ENSG00000151572 CDS Human protein_coding chr12:101433761 chr12:101433760 stopgain 0.998 1 20 hm7G_associated_SNPs_37822 0 0 0 0 2 ANO4 chr12:101433854 5'GT 101433854 Upstream 95bp 34813 chr11 67075666 67075666 1 + C T STAD 67075667 + 67075647 67075687 41 CCGCCAGGCTCTGGAGCTGCGCCTGGGGCTCCCCCTCCAGC CCGCCAGGCTCTGGAGCTGTGCCTGGGGCTCCCCCTCCAGC < 41bp 0.541347797514513 0.742317387832749 NA NA prediction 0.401939180636471 Functional Gain - SSH3 ENSG00000172830 CDS Human protein_coding chr11:67075667 chr11:67075666 nonsynonymous SNV 0.900 4 20 hm7G_associated_SNPs_37824 0 0 1 0 1 SSH3 chr11:67075645 3'AG 67075645 Downstream 22bp 34814 chr5 139192923 139192923 1 + G A SKCM 139192924 + 139192904 139192944 41 CCCGGGGAGCCAGATGTGCGGGATGGCTTCAGCGCCACGTT CCCGGGGAGCCAGATGTGCAGGATGGCTTCAGCGCCACGTT < 41bp 0.582692553356731 0.783661442312889 NA NA prediction 0.401937777912315 Functional Gain - PSD2 ENSG00000146005 CDS Human protein_coding chr5:139192924 chr5:139192923 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_37825 0 0 0 0 1 PSD2 chr5:139192894 3'AG 139192894 Downstream 30bp 34815 chr18 28913557 28913557 1 + C T READ 28913558 + 28913538 28913578 41 ATATGTATTTTTAGCAATACGGCCAGTATGCTCTTGCTGTA ATATGTATTTTTAGCAATATGGCCAGTATGCTCTTGCTGTA < 41bp 0.513860399735122 0.714828649595101 NA NA prediction 0.401936499719958 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28913558 chr18:28913557 synonymous SNV . 0 20 hm7G_associated_SNPs_37827 0 0 0 0 1 DSG1 chr18:28913552 3'AG 28913552 Downstream 6bp 34816 chr2 26652528 26652528 1 + G T LUAD 26652529 + 26652509 26652549 41 AGGATGACCAGTATGTGAAGGATTTGAAGAAACAGTCAGAT AGGATGACCAGTATGTGAATGATTTGAAGAAACAGTCAGAT < 41bp 0.70078838385829 0.901756402697814 NA NA prediction 0.401936037679049 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26652529 chr2:26652528 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37828 0 0 0 2 1 DRC1 chr2:26652496 3'AG 26652496 Downstream 33bp 34817 chr9 136412305 136412305 1 + G A UCEC 136412306 + 136412286 136412326 41 TCGAGTACATCGTGGCACAGGGGCCCACCAACCAGGGCCTG TCGAGTACATCGTGGCACAAGGGCCCACCAACCAGGGCCTG < 41bp 0.472925614987161 0.700967753654382 NA NA prediction 0.401935507308764 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136412306 chr9:136412305 synonymous SNV . 0 20 hm7G_associated_SNPs_37829 0 0 0 0 1 ADAMTSL2 chr9:136412335 5'GT 136412335 Upstream 31bp 34818 chr11 86133681 86133681 1 + G A UCEC 86133682 + 86133662 86133702 41 CGCTGCAAGCAATGCCAGAGGCGCACCTCCAACGTGGGCGA CGCTGCAAGCAATGCCAGAAGCGCACCTCCAACGTGGGCGA < 41bp 0.539850745989157 0.740818215586543 NA NA prediction 0.401934939194771 Functional Gain - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86133682 chr11:86133681 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_37830 0 0 0 0 1 CCDC81 chr11:86133616 3'AG 86133616 Downstream 66bp 34819 chr8 22020147 22020147 1 + C T GBM 22020148 + 22020128 22020168 41 CTGCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGG CTGCCCAGTGCACCTGAAATGCCTTCTTATCGTGGTGGTGG < 41bp 0.549484235807757 0.750451453743169 NA NA prediction 0.401934435870823 Functional Gain - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020148 chr8:22020147 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_37831 0 0 0 0 2 SFTPC chr8:22020087 3'AG 22020087 Downstream 61bp 34820 chr8 22020147 22020147 1 + C T GBM 22020148 + 22020128 22020168 41 CTGCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGG CTGCCCAGTGCACCTGAAATGCCTTCTTATCGTGGTGGTGG < 41bp 0.549484235807757 0.750451453743169 NA NA prediction 0.401934435870823 Functional Gain - SFTPC ENSG00000168484 CDS Human protein_coding chr8:22020148 chr8:22020147 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_37831 0 0 0 0 2 SFTPC chr8:22020245 5'GT 22020245 Upstream 99bp 34821 chr6 109763178 109763178 1 + G T SKCM 109763179 + 109763159 109763199 41 GCAGGGCTTGGCTTTCAGCGGAATCATTGGCAGTGGCCTCT GCAGGGCTTGGCTTTCAGCTGAATCATTGGCAGTGGCCTCT < 41bp 0.712602896222367 0.913567940343445 NA NA prediction 0.401930088242157 Functional Gain - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763179 chr6:109763178 stopgain 0.949 1 20 hm7G_associated_SNPs_37833 0 0 1 0 2 SMPD2 chr6:109763177 3'AG 109763177 Downstream 2bp 34822 chr6 109763178 109763178 1 + G T SKCM 109763179 + 109763159 109763199 41 GCAGGGCTTGGCTTTCAGCGGAATCATTGGCAGTGGCCTCT GCAGGGCTTGGCTTTCAGCTGAATCATTGGCAGTGGCCTCT < 41bp 0.712602896222367 0.913567940343445 NA NA prediction 0.401930088242157 Functional Gain - SMPD2 ENSG00000135587 CDS Human protein_coding chr6:109763179 chr6:109763178 stopgain 0.949 1 20 hm7G_associated_SNPs_37833 0 0 1 0 2 SMPD2 chr6:109763270 5'GT 109763270 Upstream 93bp 34823 chr1 26135530 26135530 1 + G A LGG 26135531 + 26135511 26135551 41 CCCCAGGTCATCATCCACCGGCTCCTGAGCATGTTCCACCC CCCCAGGTCATCATCCACCAGCTCCTGAGCATGTTCCACCC < 41bp 0.600712011316872 0.801676547260777 NA NA prediction 0.40192907188781 Functional Gain - SELENON ENSG00000162430 CDS Human protein_coding chr1:26135531 chr1:26135530 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_37835 0 0 1 0 1 SELENON chr1:26135517 3'AG 26135517 Downstream 14bp 34824 chr1 151018347 151018347 1 + G A UCEC 151018348 + 151018328 151018368 41 GCATTTCTGGCACTGCTTCGGCCCTTCATCAGGTACTAGTT GCATTTCTGGCACTGCTTCAGCCCTTCATCAGGTACTAGTT < 41bp 0.507354092174356 0.708315598193457 NA NA prediction 0.401923012038201 Functional Gain - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151018348 chr1:151018347 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37837 0 0 0 0 2 BNIPL chr1:151018273 3'AG 151018273 Downstream 75bp 34825 chr1 151018347 151018347 1 + G A UCEC 151018348 + 151018328 151018368 41 GCATTTCTGGCACTGCTTCGGCCCTTCATCAGGTACTAGTT GCATTTCTGGCACTGCTTCAGCCCTTCATCAGGTACTAGTT < 41bp 0.507354092174356 0.708315598193457 NA NA prediction 0.401923012038201 Functional Gain - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151018348 chr1:151018347 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_37837 0 0 0 0 2 BNIPL chr1:151018359 5'GT 151018359 Upstream 13bp 34826 chr2 171704223 171704223 1 + C T LUSC 171704224 + 171704204 171704244 41 GTCAATGCAACTGCTGGCACGACTGTTTATGGAGCTTTTGA GTCAATGCAACTGCTGGCATGACTGTTTATGGAGCTTTTGA < 41bp 0.492455191989307 0.700958205304361 NA NA prediction 0.401916410608721 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171704224 chr2:171704223 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_37838 0 0 1 0 2 GAD1 chr2:171704186 3'AG 171704186 Downstream 38bp 34827 chr2 171704223 171704223 1 + C T LUSC 171704224 + 171704204 171704244 41 GTCAATGCAACTGCTGGCACGACTGTTTATGGAGCTTTTGA GTCAATGCAACTGCTGGCATGACTGTTTATGGAGCTTTTGA < 41bp 0.492455191989307 0.700958205304361 NA NA prediction 0.401916410608721 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171704224 chr2:171704223 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_37838 0 0 1 0 2 GAD1 chr2:171704302 5'GT 171704302 Upstream 80bp 34828 chr2 233405397 233405397 1 + G A BRCA 233405398 + 233405378 233405418 41 CCGTCCACCATGGTGTGGCGGCCGGATATCGTGCTGGAGAA CCGTCCACCATGGTGTGGCAGCCGGATATCGTGCTGGAGAA < 41bp 0.561944415434677 0.76290232328023 NA NA prediction 0.401915815691106 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405398 chr2:233405397 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_37839 0 0 0 0 2 CHRNG chr2:233405312 3'AG 233405312 Downstream 86bp 34829 chr2 233405397 233405397 1 + G A BRCA 233405398 + 233405378 233405418 41 CCGTCCACCATGGTGTGGCGGCCGGATATCGTGCTGGAGAA CCGTCCACCATGGTGTGGCAGCCGGATATCGTGCTGGAGAA < 41bp 0.561944415434677 0.76290232328023 NA NA prediction 0.401915815691106 Functional Gain - CHRNG ENSG00000196811 CDS Human protein_coding chr2:233405398 chr2:233405397 nonsynonymous SNV 0.982 0 20 hm7G_associated_SNPs_37839 0 0 0 0 2 CHRNG chr2:233405421 5'GT 233405421 Upstream 25bp 34830 chr6 35782474 35782474 1 + C T COAD 35782475 + 35782455 35782495 41 CCATCCTCAGCATTGGCGACGCCCTCATCCTCTCCTTCCTG CCATCCTCAGCATTGGCGATGCCCTCATCCTCTCCTTCCTG < 41bp 0.492080245777323 0.700957262696301 NA NA prediction 0.401914525392601 Functional Gain - LHFPL5 ENSG00000197753 CDS Human protein_coding chr6:35782475 chr6:35782474 synonymous SNV . 0 20 hm7G_associated_SNPs_37840 0 0 0 0 1 LHFPL5 chr6:35782559 5'GT 35782559 Upstream 86bp 34831 chr11 89880659 89880659 1 + C T LUAD 89880660 + 89880640 89880680 41 ACAAATGCCAACTATATATCGATTGTGGATGAACATGAAAC ACAAATGCCAACTATATATTGATTGTGGATGAACATGAAAC < 41bp 0.51010024492515 0.711056467253798 NA NA prediction 0.401912444657295 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89880660 chr11:89880659 nonsynonymous SNV 0.904 4 20 hm7G_associated_SNPs_37841 0 0 1 0 1 NAALAD2 chr11:89880684 5'GT 89880684 Upstream 26bp 34832 chrX 70342421 70342421 1 + C T UCEC 70342422 + 70342402 70342442 41 GGGACAGGCAGTTGAAGTTCGCTGGTCTTTCGATAAATGCC GGGACAGGCAGTTGAAGTTTGCTGGTCTTTCGATAAATGCC < 41bp 0.534020461026485 0.734971657024085 NA NA prediction 0.401902391995201 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70342422 chrX:70342421 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37845 0 0 1 0 2 MED12 chrX:70342358 3'AG 70342358 Downstream 64bp 34833 chrX 70342421 70342421 1 + C T UCEC 70342422 + 70342402 70342442 41 GGGACAGGCAGTTGAAGTTCGCTGGTCTTTCGATAAATGCC GGGACAGGCAGTTGAAGTTTGCTGGTCTTTCGATAAATGCC < 41bp 0.534020461026485 0.734971657024085 NA NA prediction 0.401902391995201 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70342422 chrX:70342421 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37845 0 0 1 0 2 MED12 chrX:70342457 5'GT 70342457 Upstream 37bp 34834 chr19 50958882 50958882 1 + G A SKCM 50958883 + 50958863 50958903 41 GCATCGATGGGTACCTGGTGGAGTACTGCCTGGAAGGCTGT GCATCGATGGGTACCTGGTAGAGTACTGCCTGGAAGGCTGT < 41bp 0.526566195084911 0.727516352655548 NA NA prediction 0.401900315141275 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50958883 chr19:50958882 synonymous SNV . 0 20 hm7G_associated_SNPs_37846 0 0 0 0 1 MYBPC2 chr19:50958901 5'GT 50958901 Upstream 20bp 34835 chr6 159687141 159687141 1 + C T UCEC 159687142 + 159687122 159687162 41 AGCCTATCTGGATCCCATTCGCTTTCAAACATGATCCCAGC AGCCTATCTGGATCCCATTTGCTTTCAAACATGATCCCAGC < 41bp 0.534919893478609 0.735867955686506 NA NA prediction 0.401896124415794 Functional Gain - FNDC1 ENSG00000164694 CDS Human protein_coding chr6:159687142 chr6:159687141 synonymous SNV . 0 20 hm7G_associated_SNPs_37849 0 0 0 0 1 FNDC1 chr6:159687116 3'AG 159687116 Downstream 26bp 34836 chr19 3907742 3907742 1 + C T STAD 3907743 + 3907723 3907763 41 TGCTTCTAGACGACACCCCCGTGGCCACCGCCAAGAACATG TGCTTCTAGACGACACCCCTGTGGCCACCGCCAAGAACATG < 41bp 0.491838896658994 0.700947663401725 NA NA prediction 0.40189532680345 Functional Gain - ATCAY ENSG00000167654 CDS Human protein_coding chr19:3907743 chr19:3907742 synonymous SNV . 0 20 hm7G_associated_SNPs_37850 0 0 0 0 1 ATCAY chr19:3907732 3'AG 3907732 Downstream 11bp 34837 chr8 56708565 56708565 1 + C T COAD 56708566 + 56708546 56708586 41 AATCCCAAATTTCAGTCATCGGCAGGTCAGGTATTTAGAGA AATCCCAAATTTCAGTCATTGGCAGGTCAGGTATTTAGAGA < 41bp 0.550444823331633 0.751391561219761 NA NA prediction 0.401893475776257 Functional Gain - TGS1 ENSG00000137574 CDS Human protein_coding chr8:56708566 chr8:56708565 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_37852 0 0 0 0 1 TGS1 chr8:56708537 3'AG 56708537 Downstream 29bp 34838 chr8 22147834 22147834 1 + C T LUAD 22147835 + 22147815 22147855 41 TGTCTCCCATAAGGTCATTCGGAATGACTGTGTGCTGGATG TGTCTCCCATAAGGTCATTTGGAATGACTGTGTGCTGGATG < 41bp 0.564752870664383 0.765699274256878 NA NA prediction 0.401892807184991 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22147835 chr8:22147834 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37853 0 0 0 0 2 PIWIL2 chr8:22147746 3'AG 22147746 Downstream 89bp 34839 chr8 22147834 22147834 1 + C T LUAD 22147835 + 22147815 22147855 41 TGTCTCCCATAAGGTCATTCGGAATGACTGTGTGCTGGATG TGTCTCCCATAAGGTCATTTGGAATGACTGTGTGCTGGATG < 41bp 0.564752870664383 0.765699274256878 NA NA prediction 0.401892807184991 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22147835 chr8:22147834 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37853 0 0 0 0 2 PIWIL2 chr8:22147859 5'GT 22147859 Upstream 26bp 34840 chr16 30978306 30978306 1 + C T UCEC 30978307 + 30978287 30978327 41 TCGTGGACTGGGCCAAGAGCGGGGGCACTACGGGCATCGAG TCGTGGACTGGGCCAAGAGTGGGGGCACTACGGGCATCGAG < 41bp 0.488341837194113 0.700945795944279 NA NA prediction 0.401891591888558 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30978307 chr16:30978306 synonymous SNV . 0 20 hm7G_associated_SNPs_37854 0 0 1 0 1 SETD1A chr16:30978381 5'GT 30978381 Upstream 76bp 34841 chr12 123345496 123345496 1 + C T CESC 123345497 + 123345477 123345517 41 GCACAGCCCCCACCTGAGCCGCCTGCAGGAATGTTCTCGCA GCACAGCCCCCACCTGAGCTGCCTGCAGGAATGTTCTCGCA < 41bp 0.534059589299158 0.734999207117638 NA NA prediction 0.40187923563696 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123345497 chr12:123345496 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_37856 0 0 0 0 2 HIP1R chr12:123345463 3'AG 123345463 Downstream 34bp 34842 chr12 123345496 123345496 1 + C T CESC 123345497 + 123345477 123345517 41 GCACAGCCCCCACCTGAGCCGCCTGCAGGAATGTTCTCGCA GCACAGCCCCCACCTGAGCTGCCTGCAGGAATGTTCTCGCA < 41bp 0.534059589299158 0.734999207117638 NA NA prediction 0.40187923563696 Functional Gain - HIP1R ENSG00000130787 CDS Human protein_coding chr12:123345497 chr12:123345496 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_37856 0 0 0 0 2 HIP1R chr12:123345586 5'GT 123345586 Upstream 91bp 34843 chr7 43503349 43503349 1 + C T COAD 43503350 + 43503330 43503370 41 AAGCCCCAGCAGGAGGAGGCGGAGGTGGAGGGAGTGACTCA AAGCCCCAGCAGGAGGAGGTGGAGGTGGAGGGAGTGACTCA < 41bp 0.549686157819851 0.750623948284087 NA NA prediction 0.401875580928473 Functional Gain - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43503350 chr7:43503349 synonymous SNV . 0 20 hm7G_associated_SNPs_37857 0 0 0 0 2 HECW1 chr7:43503259 3'AG 43503259 Downstream 91bp 34844 chr7 43503349 43503349 1 + C T COAD 43503350 + 43503330 43503370 41 AAGCCCCAGCAGGAGGAGGCGGAGGTGGAGGGAGTGACTCA AAGCCCCAGCAGGAGGAGGTGGAGGTGGAGGGAGTGACTCA < 41bp 0.549686157819851 0.750623948284087 NA NA prediction 0.401875580928473 Functional Gain - HECW1 ENSG00000002746 CDS Human protein_coding chr7:43503350 chr7:43503349 synonymous SNV . 0 20 hm7G_associated_SNPs_37857 0 0 0 0 2 HECW1 chr7:43503398 5'GT 43503398 Upstream 50bp 34845 chr1 28285046 28285046 1 + G A UCEC 28285047 + 28285027 28285067 41 CTCAGGGGACGCCGCGCTGGGAGCTCGAGTACCAGCTGACC CTCAGGGGACGCCGCGCTGAGAGCTCGAGTACCAGCTGACC < 41bp 0.551651028182082 0.7525875677847 NA NA prediction 0.401873079205236 Functional Gain - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28285047 chr1:28285046 stopgain 0.070 1 20 hm7G_associated_SNPs_37858 0 0 0 0 1 SMPDL3B chr1:28284987 3'AG 28284987 Downstream 60bp 34846 chr5 169026061 169026061 1 + C T COAD 169026062 + 169026042 169026082 41 GCGGGCTCTAGATATTGAGCGAAAACTTTTTGCAAATGAAA GCGGGCTCTAGATATTGAGTGAAAACTTTTTGCAAATGAAA < 41bp 0.535001620119248 0.735935195495069 NA NA prediction 0.401867150751642 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169026062 chr5:169026061 stopgain 0.989 1 20 hm7G_associated_SNPs_37860 0 0 1 0 1 SPDL1 chr5:169025976 3'AG 169025976 Downstream 86bp 34847 chr2 11756801 11756801 1 + C T LUAD 11756802 + 11756782 11756822 41 CATGAAAAGGGAGAGGTCCCGCTCCCACGACTCAGCATCCT CATGAAAAGGGAGAGGTCCTGCTCCCACGACTCAGCATCCT < 41bp 0.532408810970438 0.733341965383572 NA NA prediction 0.401866308826267 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11756802 chr2:11756801 nonsynonymous SNV 0.092 0 20 hm7G_associated_SNPs_37861 0 0 0 0 2 GREB1 chr2:11756757 3'AG 11756757 Downstream 45bp 34848 chr2 11756801 11756801 1 + C T LUAD 11756802 + 11756782 11756822 41 CATGAAAAGGGAGAGGTCCCGCTCCCACGACTCAGCATCCT CATGAAAAGGGAGAGGTCCTGCTCCCACGACTCAGCATCCT < 41bp 0.532408810970438 0.733341965383572 NA NA prediction 0.401866308826267 Functional Gain - GREB1 ENSG00000196208 CDS Human protein_coding chr2:11756802 chr2:11756801 nonsynonymous SNV 0.092 0 20 hm7G_associated_SNPs_37861 0 0 0 0 2 GREB1 chr2:11756846 5'GT 11756846 Upstream 46bp 34849 chr9 130868109 130868109 1 + C T UCEC 130868110 + 130868090 130868130 41 GGCGGGGCAATGGCATCAACGTCCTCAAAATTGCCCCCGAA GGCGGGGCAATGGCATCAATGTCCTCAAAATTGCCCCCGAA < 41bp 0.516287739413139 0.717219252980134 NA NA prediction 0.40186302713399 Functional Gain - SLC25A25 ENSG00000148339 CDS Human protein_coding chr9:130868110 chr9:130868109 synonymous SNV . 0 20 hm7G_associated_SNPs_37862 0 0 1 0 1 SLC25A25 chr9:130868160 5'GT 130868160 Upstream 52bp 34850 chr17 45785875 45785875 1 + G T rs201033701 45785876 + 45785856 45785896 41 GCAGGAACAGGCCCGGAGTGGCGGTGAGATGGGGCAGGGCA GCAGGAACAGGCCCGGAGTTGCGGTGAGATGGGGCAGGGCA < 41bp 0.715577759188393 0.916508976285508 NA NA prediction 0.40186243419423 Functional Gain - TBKBP1 ENSG00000198933 CDS Human protein_coding chr17:45785876 chr17:45785875 nonsynonymous SNV 0.916 0 20 hm7G_associated_SNPs_37863 0 0 1 0 1 TBKBP1 chr17:45785878 5'GT 45785878 Upstream 4bp 34851 chr17 7951795 7951795 1 + C T UCEC 7951796 + 7951776 7951816 41 AGCCGCCTGGCCCAGATCTCGAGGGGCATCCAGGAGCGGAA AGCCGCCTGGCCCAGATCTTGAGGGGCATCCAGGAGCGGAA < 41bp 0.506637828199457 0.707565804875229 NA NA prediction 0.401855953351543 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7951796 chr17:7951795 nonsynonymous SNV 0.263 4 20 hm7G_associated_SNPs_37864 0 0 0 0 1 ALOX15B chr17:7951704 3'AG 7951704 Downstream 92bp 34852 chr12 6435700 6435700 1 + C T rs569614227 6435701 + 6435681 6435721 41 CCCAGCACCAGGCCCTCCACGCCTTCCCTGGAGGGCTCTCA CCCAGCACCAGGCCCTCCATGCCTTCCCTGGAGGGCTCTCA < 41bp 0.538420831234433 0.739348165368887 NA NA prediction 0.401854668268909 Functional Gain - PLEKHG6 ENSG00000008323 CDS Human protein_coding chr12:6435701 chr12:6435700 nonsynonymous SNV 0.976 2 20 hm7G_associated_SNPs_37865 0 0 0 0 1 PLEKHG6 chr12:6435739 5'GT 6435739 Upstream 40bp 34853 chr11 75279846 75279846 1 + C T rs649257 75279847 + 75279827 75279867 41 TGGTGACTCGGTCCTATACCGTGGGTGTCATGATGATGCAC TGGTGACTCGGTCCTATACTGTGGGTGTCATGATGATGCAC < 41bp 0.493308744791355 0.700926538721813 NA NA prediction 0.401853077443626 Functional Gain - SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279847 chr11:75279846 synonymous SNV . 0 20 hm7G_associated_SNPs_37869 1 0 1 0 2 SERPINH1 chr11:75279776 3'AG 75279776 Downstream 71bp 34854 chr11 75279846 75279846 1 + C T rs649257 75279847 + 75279827 75279867 41 TGGTGACTCGGTCCTATACCGTGGGTGTCATGATGATGCAC TGGTGACTCGGTCCTATACTGTGGGTGTCATGATGATGCAC < 41bp 0.493308744791355 0.700926538721813 NA NA prediction 0.401853077443626 Functional Gain - SERPINH1 ENSG00000149257 CDS Human protein_coding chr11:75279847 chr11:75279846 synonymous SNV . 0 20 hm7G_associated_SNPs_37869 1 0 1 0 2 SERPINH1 chr11:75279874 5'GT 75279874 Upstream 29bp 34855 chr12 13219655 13219655 1 + G A STAD 13219656 + 13219636 13219676 41 GTACAACATCGTTGGAGTTGGGAATCTGATTGGTCCTCAGG GTACAACATCGTTGGAGTTAGGAATCTGATTGGTCCTCAGG < 41bp 0.535204871737375 0.736131285885138 NA NA prediction 0.401852828295526 Functional Gain - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13219656 chr12:13219655 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_37870 0 0 1 0 2 FAM234B chr12:13219574 3'AG 13219574 Downstream 82bp 34856 chr12 13219655 13219655 1 + G A STAD 13219656 + 13219636 13219676 41 GTACAACATCGTTGGAGTTGGGAATCTGATTGGTCCTCAGG GTACAACATCGTTGGAGTTAGGAATCTGATTGGTCCTCAGG < 41bp 0.535204871737375 0.736131285885138 NA NA prediction 0.401852828295526 Functional Gain - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13219656 chr12:13219655 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_37870 0 0 1 0 2 FAM234B chr12:13219721 5'GT 13219721 Upstream 67bp 34857 chr12 110350874 110350874 1 + C T rs148581914 110350875 + 110350855 110350895 41 CACGGGACAGACTGATGAGCGAGGTAATCCCAGCTGCGGCG CACGGGACAGACTGATGAGTGAGGTAATCCCAGCTGCGGCG < 41bp 0.537404818978041 0.738330731153936 NA NA prediction 0.40185182435179 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110350875 chr12:110350874 synonymous SNV . 0 20 hm7G_associated_SNPs_37871 0 0 1 0 2 TCHP chr12:110350796 3'AG 110350796 Downstream 79bp 34858 chr12 110350874 110350874 1 + C T rs148581914 110350875 + 110350855 110350895 41 CACGGGACAGACTGATGAGCGAGGTAATCCCAGCTGCGGCG CACGGGACAGACTGATGAGTGAGGTAATCCCAGCTGCGGCG < 41bp 0.537404818978041 0.738330731153936 NA NA prediction 0.40185182435179 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110350875 chr12:110350874 synonymous SNV . 0 20 hm7G_associated_SNPs_37871 0 0 1 0 2 TCHP chr12:110350877 5'GT 110350877 Upstream 4bp 34859 chrX 48681195 48681195 1 + C T COAD 48681196 + 48681176 48681216 41 CAGATACTGGCGCAGCTTACGGGTCATGAGTGAGTGGATTT CAGATACTGGCGCAGCTTATGGGTCATGAGTGAGTGGATTT < 41bp 0.491302515611668 0.700925606499474 NA NA prediction 0.401851212998948 Functional Gain - HDAC6 ENSG00000094631 CDS Human protein_coding chrX:48681196 chrX:48681195 nonsynonymous SNV 0.740 1 20 hm7G_associated_SNPs_37872 0 0 1 0 1 HDAC6 chrX:48681204 5'GT 48681204 Upstream 10bp 34860 chr3 122514372 122514372 1 + G T SARC 122514373 + 122514353 122514393 41 TCGCGTTCATGTGGCTCCTGGACAAGAGAGGTGAGGGGTCG TCGCGTTCATGTGGCTCCTTGACAAGAGAGGTGAGGGGTCG < 41bp 0.702798788130302 0.903723852565156 NA NA prediction 0.401850128869708 Functional Gain - DIRC2 ENSG00000138463 CDS Human protein_coding chr3:122514373 chr3:122514372 synonymous SNV . 0 20 hm7G_associated_SNPs_37873 0 0 0 0 1 DIRC2 chr3:122514382 5'GT 122514382 Upstream 11bp 34861 chr17 7750744 7750744 1 + C T LUAD 7750745 + 7750725 7750765 41 CAGCAGCAACACTGGTCTCCGGGGCGTGGAGCCGAACCCAG CAGCAGCAACACTGGTCTCTGGGGCGTGGAGCCGAACCCAG < 41bp 0.551828584383634 0.752752635907169 NA NA prediction 0.40184810304707 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7750745 chr17:7750744 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_37874 0 0 0 0 1 KDM6B chr17:7750770 5'GT 7750770 Upstream 27bp 34862 chr3 118906821 118906821 1 + C T GBM 118906822 + 118906802 118906842 41 AGCAGGAAAATTCTTCTGGCGGTAAGACCTCAAAATTCTCT AGCAGGAAAATTCTTCTGGTGGTAAGACCTCAAAATTCTCT < 41bp 0.517481990760858 0.718404807704513 NA NA prediction 0.401845633887311 Functional Gain - UPK1B ENSG00000114638 CDS Human protein_coding chr3:118906822 chr3:118906821 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_37876 0 0 0 0 1 UPK1B chr3:118906822 5'GT 118906822 Upstream 2bp 34863 chr4 71824700 71824700 1 + C T LUAD 71824701 + 71824681 71824721 41 ACTTGGCAGTGGCAACCTTCGGATGGCTGTCATGCTTCCTG ACTTGGCAGTGGCAACCTTTGGATGGCTGTCATGCTTCCTG < 41bp 0.489103644603782 0.700922403435418 NA NA prediction 0.401844806870835 Functional Gain - MOB1B ENSG00000173542 CDS Human protein_coding chr4:71824701 chr4:71824700 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_37878 0 0 1 0 1 MOB1B chr4:71824757 5'GT 71824757 Upstream 58bp 34864 chr17 38610294 38610294 1 + G A UCEC 38610295 + 38610275 38610315 41 CCCCAACTGCGACCGCAACGGCAACTTCCACCCCAAGCAGG CCCCAACTGCGACCGCAACAGCAACTTCCACCCCAAGCAGG < 41bp 0.572651876503708 0.773573669524371 NA NA prediction 0.401843586041324 Functional Gain - IGFBP4 ENSG00000141753 CDS Human protein_coding chr17:38610295 chr17:38610294 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_37880 0 0 0 0 1 IGFBP4 chr17:38610314 5'GT 38610314 Upstream 21bp 34865 chrX 152823641 152823641 1 + C T SKCM 152823642 + 152823622 152823662 41 ATGACAACTTCACCAGCATCGTCAAGGCAGTCATGTGGGGC ATGACAACTTCACCAGCATTGTCAAGGCAGTCATGTGGGGC < 41bp 0.519528254336355 0.720449929394331 NA NA prediction 0.401843350115953 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152823642 chrX:152823641 synonymous SNV . 0 20 hm7G_associated_SNPs_37881 0 0 0 0 1 ATP2B3 chrX:152823570 3'AG 152823570 Downstream 72bp 34866 chr1 153603066 153603066 1 + G T UCEC 153603067 + 153603047 153603087 41 ACGCCCACTCGGGCAAAGAGGGGGACAAGTACAAGCTGAGC ACGCCCACTCGGGCAAAGATGGGGACAAGTACAAGCTGAGC < 41bp 0.710661547487772 0.911582321966212 NA NA prediction 0.401841548956879 Functional Gain - S100A1 ENSG00000160678 CDS Human protein_coding chr1:153603067 chr1:153603066 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_37882 0 0 1 0 2 S100A1 chr1:153602985 3'AG 153602985 Downstream 82bp 34867 chr1 153603066 153603066 1 + G T UCEC 153603067 + 153603047 153603087 41 ACGCCCACTCGGGCAAAGAGGGGGACAAGTACAAGCTGAGC ACGCCCACTCGGGCAAAGATGGGGACAAGTACAAGCTGAGC < 41bp 0.710661547487772 0.911582321966212 NA NA prediction 0.401841548956879 Functional Gain - S100A1 ENSG00000160678 CDS Human protein_coding chr1:153603067 chr1:153603066 nonsynonymous SNV 0.997 1 20 hm7G_associated_SNPs_37882 0 0 1 0 2 S100A1 chr1:153603138 5'GT 153603138 Upstream 73bp 34868 chr12 53451877 53451877 1 + C T rs151036307 53451878 + 53451858 53451898 41 CAGCCCTCCTCCTCAAAGGCGATGTCATGGTGAGGGGGGTC CAGCCCTCCTCCTCAAAGGTGATGTCATGGTGAGGGGGGTC < 41bp 0.526718225044246 0.727632803505811 NA NA prediction 0.40182915692313 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53451878 chr12:53451877 synonymous SNV . 0 20 hm7G_associated_SNPs_37885 0 0 1 0 2 TNS2 chr12:53451811 3'AG 53451811 Downstream 67bp 34869 chr12 53451877 53451877 1 + C T rs151036307 53451878 + 53451858 53451898 41 CAGCCCTCCTCCTCAAAGGCGATGTCATGGTGAGGGGGGTC CAGCCCTCCTCCTCAAAGGTGATGTCATGGTGAGGGGGGTC < 41bp 0.526718225044246 0.727632803505811 NA NA prediction 0.40182915692313 Functional Gain - TNS2 ENSG00000111077 CDS Human protein_coding chr12:53451878 chr12:53451877 synonymous SNV . 0 20 hm7G_associated_SNPs_37885 0 0 1 0 2 TNS2 chr12:53451886 5'GT 53451886 Upstream 10bp 34870 chr17 6913121 6913121 1 + C T COAD 6913122 + 6913102 6913142 41 GCCATTTCCTCACCATGTGCGTCTTCACGTGCACTGCCCAG GCCATTTCCTCACCATGTGTGTCTTCACGTGCACTGCCCAG < 41bp 0.497110335469965 0.700913393699675 NA NA prediction 0.40182678739935 Functional Gain - ALOX12 ENSG00000108839;ENSG00000215067 CDS Human protein_coding chr17:6913122 chr17:6913121 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_37886 0 0 0 0 2 ALOX12 chr17:6913066 3'AG 6913066 Downstream 56bp 34871 chr17 6913121 6913121 1 + C T COAD 6913122 + 6913102 6913142 41 GCCATTTCCTCACCATGTGCGTCTTCACGTGCACTGCCCAG GCCATTTCCTCACCATGTGTGTCTTCACGTGCACTGCCCAG < 41bp 0.497110335469965 0.700913393699675 NA NA prediction 0.40182678739935 Functional Gain - ALOX12 ENSG00000108839;ENSG00000215067 CDS Human other chr17:6913122 chr17:6913121 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_37886 0 0 0 0 2 ALOX12 chr17:6913166 5'GT 6913166 Upstream 46bp 34872 chr11 4095799 4095799 1 + C T LUAD 4095800 + 4095780 4095820 41 CCATCTGGAAAAGAAGCTGCGCGATGAGATCAACCTTGCTA CCATCTGGAAAAGAAGCTGTGCGATGAGATCAACCTTGCTA < 41bp 0.539680775146626 0.740593447021556 NA NA prediction 0.401825343749859 Functional Gain - STIM1 ENSG00000167323 CDS Human protein_coding chr11:4095800 chr11:4095799 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_37889 0 0 1 0 1 STIM1 chr11:4095732 3'AG 4095732 Downstream 68bp 34873 chr9 112686035 112686035 1 + C T rs113397356 112686036 + 112686016 112686056 41 CTGGAGCAAGAAATACAAACGCTAGAAAGTGAAGAGTCCCA CTGGAGCAAGAAATACAAATGCTAGAAAGTGAAGAGTCCCA < 41bp 0.524013637452547 0.724926288838032 NA NA prediction 0.401825302770971 Functional Gain - PALM2;PALM2-AKAP2 ENSG00000157654;ENSG00000241978;ENSG00000243444 CDS Human other chr9:112686036 chr9:112686035 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_37890 0 0 0 0 2 PALM2;PALM2-AKAP2 chr9:112686015 3'AG 112686015 Downstream 21bp 34874 chr9 112686035 112686035 1 + C T rs113397356 112686036 + 112686016 112686056 41 CTGGAGCAAGAAATACAAACGCTAGAAAGTGAAGAGTCCCA CTGGAGCAAGAAATACAAATGCTAGAAAGTGAAGAGTCCCA < 41bp 0.524013637452547 0.724926288838032 NA NA prediction 0.401825302770971 Functional Gain - PALM2;PALM2-AKAP2 ENSG00000157654;ENSG00000241978;ENSG00000243444 CDS Human other chr9:112686036 chr9:112686035 nonsynonymous SNV 0.996 0 20 hm7G_associated_SNPs_37890 0 0 0 0 2 PALM2;PALM2-AKAP2 chr9:112686129 5'GT 112686129 Upstream 95bp 34875 chr17 4439389 4439389 1 + C T UCEC 4439390 + 4439370 4439410 41 GTACGTGGTCATCCCCACGCGGCGCGCCACTGCCGTGGCCT GTACGTGGTCATCCCCACGTGGCGCGCCACTGCCGTGGCCT < 41bp 0.5272038324314 0.728114742267687 NA NA prediction 0.401821819672574 Functional Gain - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4439390 chr17:4439389 nonsynonymous SNV 0.068 3 20 hm7G_associated_SNPs_37893 0 0 0 0 2 SPNS2 chr17:4439371 3'AG 4439371 Downstream 19bp 34876 chr17 4439389 4439389 1 + C T UCEC 4439390 + 4439370 4439410 41 GTACGTGGTCATCCCCACGCGGCGCGCCACTGCCGTGGCCT GTACGTGGTCATCCCCACGTGGCGCGCCACTGCCGTGGCCT < 41bp 0.5272038324314 0.728114742267687 NA NA prediction 0.401821819672574 Functional Gain - SPNS2 ENSG00000183018 CDS Human protein_coding chr17:4439390 chr17:4439389 nonsynonymous SNV 0.068 3 20 hm7G_associated_SNPs_37893 0 0 0 0 2 SPNS2 chr17:4439469 5'GT 4439469 Upstream 81bp 34877 chr19 50148336 50148336 1 + G A rs115252174 50148337 + 50148317 50148357 41 GAGGAGTCGGGGGAGGATCGGGGCGATGGTCCGCCAGACAG GAGGAGTCGGGGGAGGATCAGGGCGATGGTCCGCCAGACAG < 41bp 0.488706312120978 0.700910213765859 NA NA prediction 0.401820427531718 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50148337 chr19:50148336 nonsynonymous SNV 0.547 2 20 hm7G_associated_SNPs_37895 0 0 1 0 2 SCAF1 chr19:50148278 3'AG 50148278 Downstream 59bp 34878 chr19 50148336 50148336 1 + G A rs115252174 50148337 + 50148317 50148357 41 GAGGAGTCGGGGGAGGATCGGGGCGATGGTCCGCCAGACAG GAGGAGTCGGGGGAGGATCAGGGCGATGGTCCGCCAGACAG < 41bp 0.488706312120978 0.700910213765859 NA NA prediction 0.401820427531718 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50148337 chr19:50148336 nonsynonymous SNV 0.547 2 20 hm7G_associated_SNPs_37895 0 0 1 0 2 SCAF1 chr19:50148391 5'GT 50148391 Upstream 56bp 34879 chr12 56420794 56420794 1 + C T UCEC 56420795 + 56420775 56420815 41 TGGTCTGTATTGGACCCAACGTGCTCATGGTGCACAAGCGC TGGTCTGTATTGGACCCAATGTGCTCATGGTGCACAAGCGC < 41bp 0.51377212676095 0.714679332559965 NA NA prediction 0.401814411598029 Functional Gain - IKZF4 ENSG00000123411 CDS Human protein_coding chr12:56420795 chr12:56420794 synonymous SNV . 0 20 hm7G_associated_SNPs_37897 0 0 1 0 1 IKZF4 chr12:56420825 5'GT 56420825 Upstream 32bp 34880 chr2 220503516 220503516 1 + C T rs41272709 220503517 + 220503497 220503537 41 AGTGCCCGTCCTTTCCCGCCGTGGATGATGGTGGCAGCCGC AGTGCCCGTCCTTTCCCGCTGTGGATGATGGTGGCAGCCGC < 41bp 0.50640496584712 0.707312094736573 NA NA prediction 0.401814257778908 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503517 chr2:220503516 nonsynonymous SNV 0.960 0 20 hm7G_associated_SNPs_37898 0 0 0 0 2 SLC4A3 chr2:220503425 3'AG 220503425 Downstream 92bp 34881 chr2 220503516 220503516 1 + C T rs41272709 220503517 + 220503497 220503537 41 AGTGCCCGTCCTTTCCCGCCGTGGATGATGGTGGCAGCCGC AGTGCCCGTCCTTTCCCGCTGTGGATGATGGTGGCAGCCGC < 41bp 0.50640496584712 0.707312094736573 NA NA prediction 0.401814257778908 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220503517 chr2:220503516 nonsynonymous SNV 0.960 0 20 hm7G_associated_SNPs_37898 0 0 0 0 2 SLC4A3 chr2:220503591 5'GT 220503591 Upstream 76bp 34882 chr9 130471725 130471725 1 + G A rs376888376 130471726 + 130471706 130471746 41 AGCGGAAGTGGGATGAGCTGGCTGTGCAGGAGAAGATGTTC AGCGGAAGTGGGATGAGCTAGCTGTGCAGGAGAAGATGTTC < 41bp 0.585575729197973 0.78648026929527 NA NA prediction 0.401809080194593 Functional Gain - CFAP157 ENSG00000160401 CDS Human protein_coding chr9:130471726 chr9:130471725 synonymous SNV . 0 20 hm7G_associated_SNPs_37899 0 0 0 0 1 CFAP157 chr9:130471701 3'AG 130471701 Downstream 25bp 34883 chr19 36574034 36574034 1 + C T UCEC 36574035 + 36574015 36574055 41 CATGTCACACTTCCCAGACCGGGGGAGCGAGAATGGGACAC CATGTCACACTTCCCAGACTGGGGGAGCGAGAATGGGACAC < 41bp 0.56184877626427 0.762752192030551 NA NA prediction 0.401806831532563 Functional Gain - WDR62 ENSG00000075702 CDS Human protein_coding chr19:36574035 chr19:36574034 nonsynonymous SNV 0.939 1 20 hm7G_associated_SNPs_37900 0 0 1 0 1 WDR62 chr19:36573965 3'AG 36573965 Downstream 70bp 34884 chrX 47040657 47040657 1 + C T UCEC 47040658 + 47040638 47040678 41 TGGGCCACCTCCGAGGAGCCGCCGGTCGACTACAGCTACTA TGGGCCACCTCCGAGGAGCTGCCGGTCGACTACAGCTACTA < 41bp 0.526429026777347 0.727331085584219 NA NA prediction 0.401804117613744 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47040658 chrX:47040657 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_37902 0 0 1 0 1 RBM10 chrX:47040614 3'AG 47040614 Downstream 44bp 34885 chr4 38907208 38907208 1 + G A SKCM 38907209 + 38907189 38907229 41 GATTCATGGTGTAAATTCTGGATCTTCTGAAGGAGCCCAAC GATTCATGGTGTAAATTCTAGATCTTCTGAAGGAGCCCAAC < 41bp 0.507134891704469 0.708036835715431 NA NA prediction 0.401803888021925 Functional Gain - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907209 chr4:38907208 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_37903 0 0 1 0 2 FAM114A1 chr4:38907143 3'AG 38907143 Downstream 66bp 34886 chr4 38907208 38907208 1 + G A SKCM 38907209 + 38907189 38907229 41 GATTCATGGTGTAAATTCTGGATCTTCTGAAGGAGCCCAAC GATTCATGGTGTAAATTCTAGATCTTCTGAAGGAGCCCAAC < 41bp 0.507134891704469 0.708036835715431 NA NA prediction 0.401803888021925 Functional Gain - FAM114A1 ENSG00000197712 CDS Human protein_coding chr4:38907209 chr4:38907208 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_37903 0 0 1 0 2 FAM114A1 chr4:38907256 5'GT 38907256 Upstream 49bp 34887 chr7 141341162 141341162 1 + C T UCEC 141341163 + 141341143 141341183 41 TTTGTACAGGAGAATATTACGAAGGCTTGCGTCCTACTGGG TTTGTACAGGAGAATATTATGAAGGCTTGCGTCCTACTGGG < 41bp 0.562521811220662 0.763423135511248 NA NA prediction 0.401802648581172 Functional Gain - AGK ENSG00000006530 CDS Human protein_coding chr7:141341163 chr7:141341162 stopgain 0.974 1 20 hm7G_associated_SNPs_37904 2 0 1 0 1 AGK chr7:141341198 5'GT 141341198 Upstream 37bp 34888 chr8 22424343 22424343 1 + C T UCEC 22424344 + 22424324 22424364 41 CCCCTGCCTAGAGAAAGGCCGCCAGGCTCAAGTTTGACTTC CCCCTGCCTAGAGAAAGGCTGCCAGGCTCAAGTTTGACTTC < 41bp 0.495891128702381 0.700900762765241 NA NA prediction 0.401801525530483 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22424344 chr8:22424343 synonymous SNV . 0 20 hm7G_associated_SNPs_37905 0 0 1 0 2 SORBS3 chr8:22424335 3'AG 22424335 Downstream 9bp 34889 chr8 22424343 22424343 1 + C T UCEC 22424344 + 22424324 22424364 41 CCCCTGCCTAGAGAAAGGCCGCCAGGCTCAAGTTTGACTTC CCCCTGCCTAGAGAAAGGCTGCCAGGCTCAAGTTTGACTTC < 41bp 0.495891128702381 0.700900762765241 NA NA prediction 0.401801525530483 Functional Gain - SORBS3 ENSG00000120896 CDS Human protein_coding chr8:22424344 chr8:22424343 synonymous SNV . 0 20 hm7G_associated_SNPs_37905 0 0 1 0 2 SORBS3 chr8:22424381 5'GT 22424381 Upstream 39bp 34890 chr21 47361613 47361613 1 + C T rs577450486 47361614 + 47361594 47361634 41 GAGGTCACCGGGATGGGCACGCTGTAATCCTACCCAGCACC GAGGTCACCGGGATGGGCATGCTGTAATCCTACCCAGCACC < 41bp 0.498792301195044 0.700899442925548 NA NA prediction 0.401798885851095 Functional Gain - PCBP3 ENSG00000183570 CDS Human protein_coding chr21:47361614 chr21:47361613 nonsynonymous SNV 0.576 1 20 hm7G_associated_SNPs_37908 0 0 0 0 1 PCBP3 chr21:47361584 3'AG 47361584 Downstream 30bp 34891 chr1 3670752 3670752 1 + C T COAD 3670753 + 3670733 3670773 41 CTTCGAAGGGTCTTCCCCACGCATCCTGACTGCCCCCAGTT CTTCGAAGGGTCTTCCCCATGCATCCTGACTGCCCCCAGTT < 41bp 0.491317095970064 0.700898198180091 NA NA prediction 0.401796396360182 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3670753 chr1:3670752 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_37909 0 0 0 0 1 CCDC27 chr1:3670805 5'GT 3670805 Upstream 54bp 34892 chr16 31474228 31474228 1 + C T BRCA 31474229 + 31474209 31474249 41 GGCACAGGGTGGAAGCTTCCGGAGCCTCAGGTGAGTCCCTG GGCACAGGGTGGAAGCTTCTGGAGCCTCAGGTGAGTCCCTG < 41bp 0.54382145609502 0.744717337369365 NA NA prediction 0.401791762548689 Functional Gain - ARMC5 ENSG00000140691 CDS Human protein_coding chr16:31474229 chr16:31474228 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_37911 0 0 1 0 1 ARMC5 chr16:31474238 5'GT 31474238 Upstream 11bp 34893 chr16 570797 570797 1 + G A PRAD 570798 + 570778 570818 41 ACATCGACAGGATCATCGTGGCCATCATGGAGACCAACCCG ACATCGACAGGATCATCGTAGCCATCATGGAGACCAACCCG < 41bp 0.547231948308578 0.748125427518338 NA NA prediction 0.40178695841952 Functional Gain - RAB11FIP3 ENSG00000090565 CDS Human protein_coding chr16:570798 chr16:570797 synonymous SNV . 0 20 hm7G_associated_SNPs_37914 0 0 1 0 1 RAB11FIP3 chr16:570726 3'AG 570726 Downstream 72bp 34894 chr5 131606704 131606704 1 + C T UCEC 131606705 + 131606685 131606725 41 TCCATATGGACAACCCCCTCGCTTTCCAGTCCCTCACAATG TCCATATGGACAACCCCCTTGCTTTCCAGTCCCTCACAATG < 41bp 0.547976546393261 0.74886956433952 NA NA prediction 0.401786035892516 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131606705 chr5:131606704 nonsynonymous SNV 0.787 1 20 hm7G_associated_SNPs_37916 0 0 0 0 2 PDLIM4 chr5:131606608 3'AG 131606608 Downstream 97bp 34895 chr5 131606704 131606704 1 + C T UCEC 131606705 + 131606685 131606725 41 TCCATATGGACAACCCCCTCGCTTTCCAGTCCCTCACAATG TCCATATGGACAACCCCCTTGCTTTCCAGTCCCTCACAATG < 41bp 0.547976546393261 0.74886956433952 NA NA prediction 0.401786035892516 Functional Gain - PDLIM4 ENSG00000131435 CDS Human protein_coding chr5:131606705 chr5:131606704 nonsynonymous SNV 0.787 1 20 hm7G_associated_SNPs_37916 0 0 0 0 2 PDLIM4 chr5:131606786 5'GT 131606786 Upstream 83bp 34896 chr11 67171760 67171760 1 + C T LUSC 67171761 + 67171741 67171781 41 GGTCCGACTCAGAGCTCAGCGGGCCTGGCCCATATCGCCAG GGTCCGACTCAGAGCTCAGTGGGCCTGGCCCATATCGCCAG < 41bp 0.539086729598544 0.739979654295372 NA NA prediction 0.401785849393657 Functional Gain - TBC1D10C ENSG00000175463 CDS Human protein_coding chr11:67171761 chr11:67171760 synonymous SNV . 0 20 hm7G_associated_SNPs_37917 0 0 0 0 1 TBC1D10C chr11:67171662 3'AG 67171662 Downstream 99bp 34897 chr1 2428999 2428999 1 + C T rs369019288 2429000 + 2428980 2429020 41 TGAACCGAGCCAAGTTCAGCGCCAACGGTGGCTGCGGCTAC TGAACCGAGCCAAGTTCAGTGCCAACGGTGGCTGCGGCTAC < 41bp 0.490715994908389 0.700891704726554 NA NA prediction 0.401783409453108 Functional Gain - PLCH2 ENSG00000149527 CDS Human protein_coding chr1:2429000 chr1:2428999 synonymous SNV . 0 20 hm7G_associated_SNPs_37919 0 0 0 0 1 PLCH2 chr1:2428941 3'AG 2428941 Downstream 59bp 34898 chr1 6272055 6272055 1 + C T STAD 6272056 + 6272036 6272076 41 AGCACCAAGGTGCTGCTGGCGGAGGGCGAGAACACGCCCTT AGCACCAAGGTGCTGCTGGTGGAGGGCGAGAACACGCCCTT < 41bp 0.560571196969066 0.761462628041985 NA NA prediction 0.401782862145838 Functional Gain - RNF207 ENSG00000158286 CDS Human protein_coding chr1:6272056 chr1:6272055 nonsynonymous SNV 0.301 1 20 hm7G_associated_SNPs_37920 0 0 1 1 1 RNF207 chr1:6272113 5'GT 6272113 Upstream 59bp 34899 chr5 145887490 145887490 1 + C T READ 145887491 + 145887471 145887511 41 AATCATTAAGGAAGATCCTCGATGTATTAAGTTCTCCTCCA AATCATTAAGGAAGATCCTTGATGTATTAAGTTCTCCTCCA < 41bp 0.534445540373629 0.735336515936232 NA NA prediction 0.401781951125206 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145887491 chr5:145887490 stopgain 0.999 1 20 hm7G_associated_SNPs_37921 0 0 1 0 1 TCERG1 chr5:145887436 3'AG 145887436 Downstream 55bp 34900 chr1 6646807 6646807 1 + G A COAD 6646808 + 6646788 6646828 41 CGCCGAAGGATGGAGCTGCGGGTGCACATGGTGTCTCACAC CGCCGAAGGATGGAGCTGCAGGTGCACATGGTGTCTCACAC < 41bp 0.555584481509756 0.756472989951412 NA NA prediction 0.401777016883312 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6646808 chr1:6646807 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37924 0 0 1 0 2 ZBTB48 chr1:6646755 3'AG 6646755 Downstream 53bp 34901 chr1 6646807 6646807 1 + G A COAD 6646808 + 6646788 6646828 41 CGCCGAAGGATGGAGCTGCGGGTGCACATGGTGTCTCACAC CGCCGAAGGATGGAGCTGCAGGTGCACATGGTGTCTCACAC < 41bp 0.555584481509756 0.756472989951412 NA NA prediction 0.401777016883312 Functional Gain - ZBTB48 ENSG00000204859 CDS Human protein_coding chr1:6646808 chr1:6646807 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_37924 0 0 1 0 2 ZBTB48 chr1:6646847 5'GT 6646847 Upstream 41bp 34902 chr1 11825928 11825928 1 + C T rs182679402 11825929 + 11825909 11825949 41 TTTAGAGCAACGAAGATTCCGGAGGAGCCTGGGCATCGGCC TTTAGAGCAACGAAGATTCTGGAGGAGCCTGGGCATCGGCC < 41bp 0.498952285288168 0.700887975502743 NA NA prediction 0.401775951005486 Functional Gain - C1orf167 ENSG00000215910 CDS Human protein_coding chr1:11825929 chr1:11825928 nonsynonymous SNV 0.000 2 20 hm7G_associated_SNPs_37925 0 0 0 1 1 C1orf167 chr1:11825914 3'AG 11825914 Downstream 15bp 34903 chr8 22147762 22147762 1 + G A UCEC 22147763 + 22147743 22147783 41 CAGATTGCAGATCTGGCCAGGCTATGCAGCTAGCATCCGAA CAGATTGCAGATCTGGCCAAGCTATGCAGCTAGCATCCGAA < 41bp 0.575762039246639 0.776648270434418 NA NA prediction 0.401772462375558 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22147763 chr8:22147762 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_37928 0 0 0 0 2 PIWIL2 chr8:22147746 3'AG 22147746 Downstream 17bp 34904 chr8 22147762 22147762 1 + G A UCEC 22147763 + 22147743 22147783 41 CAGATTGCAGATCTGGCCAGGCTATGCAGCTAGCATCCGAA CAGATTGCAGATCTGGCCAAGCTATGCAGCTAGCATCCGAA < 41bp 0.575762039246639 0.776648270434418 NA NA prediction 0.401772462375558 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22147763 chr8:22147762 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_37928 0 0 0 0 2 PIWIL2 chr8:22147859 5'GT 22147859 Upstream 98bp 34905 chr15 79184612 79184612 1 + C T COAD 79184613 + 79184593 79184633 41 ATTCCTGAAGAGCTAAAACCGTGGCTTGTTGATGACTGGGA ATTCCTGAAGAGCTAAAACTGTGGCTTGTTGATGACTGGGA < 41bp 0.500424919091938 0.701310194457322 NA NA prediction 0.401770550730767 Functional Gain - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79184613 chr15:79184612 nonsynonymous SNV 0.953 2 20 hm7G_associated_SNPs_37931 0 0 1 0 2 MORF4L1 chr15:79184554 3'AG 79184554 Downstream 59bp 34906 chr15 79184612 79184612 1 + C T COAD 79184613 + 79184593 79184633 41 ATTCCTGAAGAGCTAAAACCGTGGCTTGTTGATGACTGGGA ATTCCTGAAGAGCTAAAACTGTGGCTTGTTGATGACTGGGA < 41bp 0.500424919091938 0.701310194457322 NA NA prediction 0.401770550730767 Functional Gain - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79184613 chr15:79184612 nonsynonymous SNV 0.953 2 20 hm7G_associated_SNPs_37931 0 0 1 0 2 MORF4L1 chr15:79184655 5'GT 79184655 Upstream 44bp 34907 chr19 3532000 3532000 1 + G A rs185829085 3532001 + 3531981 3532021 41 GCACCCCGCCACTGCAGTCGGAGCGGCGGCTGCAGGGCCAC GCACCCCGCCACTGCAGTCAGAGCGGCGGCTGCAGGGCCAC < 41bp 0.577523698135248 0.778408696895572 NA NA prediction 0.401769997520648 Functional Gain - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3532001 chr19:3532000 synonymous SNV . 0 20 hm7G_associated_SNPs_37932 0 0 1 0 2 FZR1 chr19:3531909 3'AG 3531909 Downstream 92bp 34908 chr19 3532000 3532000 1 + G A rs185829085 3532001 + 3531981 3532021 41 GCACCCCGCCACTGCAGTCGGAGCGGCGGCTGCAGGGCCAC GCACCCCGCCACTGCAGTCAGAGCGGCGGCTGCAGGGCCAC < 41bp 0.577523698135248 0.778408696895572 NA NA prediction 0.401769997520648 Functional Gain - FZR1 ENSG00000105325 CDS Human protein_coding chr19:3532001 chr19:3532000 synonymous SNV . 0 20 hm7G_associated_SNPs_37932 0 0 1 0 2 FZR1 chr19:3532093 5'GT 3532093 Upstream 94bp 34909 chr12 122468669 122468669 1 + G T COAD 122468670 + 122468650 122468690 41 ACAAATGGGTCCCTGTGACGGAGCCCAAGGTTGATGACGTG ACAAATGGGTCCCTGTGACTGAGCCCAAGGTTGATGACGTG < 41bp 0.714472442048443 0.915354801136078 NA NA prediction 0.401764718175271 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122468670 chr12:122468669 synonymous SNV . 0 20 hm7G_associated_SNPs_37933 0 0 1 0 2 BCL7A chr12:122468606 3'AG 122468606 Downstream 64bp 34910 chr12 122468669 122468669 1 + G T COAD 122468670 + 122468650 122468690 41 ACAAATGGGTCCCTGTGACGGAGCCCAAGGTTGATGACGTG ACAAATGGGTCCCTGTGACTGAGCCCAAGGTTGATGACGTG < 41bp 0.714472442048443 0.915354801136078 NA NA prediction 0.401764718175271 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122468670 chr12:122468669 synonymous SNV . 0 20 hm7G_associated_SNPs_37933 0 0 1 0 2 BCL7A chr12:122468687 5'GT 122468687 Upstream 19bp 34911 chr8 11400835 11400835 1 + C T rs75383960 11400836 + 11400816 11400856 41 TCAGCGCCCAAGACAAGGACGCCCCGCCACTGCCGCCCCTG TCAGCGCCCAAGACAAGGATGCCCCGCCACTGCCGCCCCTG < 41bp 0.544444958500275 0.745327112493688 NA NA prediction 0.401764307986828 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11400836 chr8:11400835 synonymous SNV . 0 20 hm7G_associated_SNPs_37934 2 0 0 0 1 BLK chr8:11400856 5'GT 11400856 Upstream 22bp 34912 chr6 33374045 33374045 1 + C T STAD 33374046 + 33374026 33374066 41 CCAGAATGAACGGTCATCACGCAGCCACAGTGTATTCCAGC CCAGAATGAACGGTCATCATGCAGCCACAGTGTATTCCAGC < 41bp 0.550843055439906 0.75171892917576 NA NA prediction 0.401751747471708 Functional Gain - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33374046 chr6:33374045 nonsynonymous SNV 0.978 5 20 hm7G_associated_SNPs_37937 0 0 1 0 1 KIFC1 chr6:33373973 3'AG 33373973 Downstream 73bp 34913 chr16 19576216 19576216 1 + C T UCEC 19576217 + 19576197 19576237 41 AGCTGAATTTGCATCATGCCGACTGGAGGCTGTACCATTGG AGCTGAATTTGCATCATGCTGACTGGAGGCTGTACCATTGG < 41bp 0.537310358245969 0.738185847784939 NA NA prediction 0.401750979077941 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19576217 chr16:19576216 stopgain 0.367 1 20 hm7G_associated_SNPs_37938 0 0 1 0 2 C16orf62 chr16:19576173 3'AG 19576173 Downstream 44bp 34914 chr16 19576216 19576216 1 + C T UCEC 19576217 + 19576197 19576237 41 AGCTGAATTTGCATCATGCCGACTGGAGGCTGTACCATTGG AGCTGAATTTGCATCATGCTGACTGGAGGCTGTACCATTGG < 41bp 0.537310358245969 0.738185847784939 NA NA prediction 0.401750979077941 Functional Gain - C16orf62 ENSG00000103544 CDS Human protein_coding chr16:19576217 chr16:19576216 stopgain 0.367 1 20 hm7G_associated_SNPs_37938 0 0 1 0 2 C16orf62 chr16:19576272 5'GT 19576272 Upstream 57bp 34915 chr14 24546117 24546117 1 + C T UCEC 24546118 + 24546098 24546138 41 GGTCATCGCCTCCTACCGTCGTTGCCTGCCCCAGATCCAGC GGTCATCGCCTCCTACCGTTGTTGCCTGCCCCAGATCCAGC < 41bp 0.520414659230955 0.721287308522568 NA NA prediction 0.401745298583226 Functional Gain - CPNE6 ENSG00000100884 CDS Human protein_coding chr14:24546118 chr14:24546117 nonsynonymous SNV 0.993 4 20 hm7G_associated_SNPs_37941 0 0 0 0 1 CPNE6 chr14:24546088 3'AG 24546088 Downstream 30bp 34916 chr19 10557029 10557029 1 + C T UCEC 10557030 + 10557010 10557050 41 TCCTGTACCGCTCAGACAGCGACTATGACATGTCACCCAAG TCCTGTACCGCTCAGACAGTGACTATGACATGTCACCCAAG < 41bp 0.492531433880605 0.700871534269377 NA NA prediction 0.401743068538753 Functional Gain - PDE4A ENSG00000065989 CDS Human protein_coding chr19:10557030 chr19:10557029 synonymous SNV . 0 20 hm7G_associated_SNPs_37942 0 0 0 0 1 PDE4A chr19:10557085 5'GT 10557085 Upstream 57bp 34917 chr10 16547115 16547115 1 + C T COAD 16547116 + 16547096 16547136 41 AACTACTTCATTACCAACTCGGCCCAGATATTGACATGCCT AACTACTTCATTACCAACTTGGCCCAGATATTGACATGCCT < 41bp 0.527094684965152 0.727964678434157 NA NA prediction 0.401739986938009 Functional Gain - PTER ENSG00000165983 CDS Human protein_coding chr10:16547116 chr10:16547115 synonymous SNV . 0 20 hm7G_associated_SNPs_37943 0 0 1 0 2 PTER chr10:16547019 3'AG 16547019 Downstream 97bp 34918 chr10 16547115 16547115 1 + C T COAD 16547116 + 16547096 16547136 41 AACTACTTCATTACCAACTCGGCCCAGATATTGACATGCCT AACTACTTCATTACCAACTTGGCCCAGATATTGACATGCCT < 41bp 0.527094684965152 0.727964678434157 NA NA prediction 0.401739986938009 Functional Gain - PTER ENSG00000165983 CDS Human protein_coding chr10:16547116 chr10:16547115 synonymous SNV . 0 20 hm7G_associated_SNPs_37943 0 0 1 0 2 PTER chr10:16547159 5'GT 16547159 Upstream 45bp 34919 chr1 55451845 55451845 1 + G A COAD 55451846 + 55451826 55451866 41 CACAGTGGTTCTGGTGGCCGGGACGCTCTGCTTCGCTTGGT CACAGTGGTTCTGGTGGCCAGGACGCTCTGCTTCGCTTGGT < 41bp 0.597458734256775 0.798328241134671 NA NA prediction 0.401739013755791 Functional Gain - TMEM61 ENSG00000143001 CDS Human protein_coding chr1:55451846 chr1:55451845 nonsynonymous SNV 0.022 4 20 hm7G_associated_SNPs_37944 0 0 0 0 1 TMEM61 chr1:55451770 3'AG 55451770 Downstream 76bp 34920 chr11 126283912 126283912 1 + G A BRCA 126283913 + 126283893 126283933 41 TTAAGCGGATGCTGGAGATGGGAGCTATCAAGAACCTCACG TTAAGCGGATGCTGGAGATAGGAGCTATCAAGAACCTCACG < 41bp 0.527073424270361 0.727940565733933 NA NA prediction 0.401734282927144 Functional Gain - ST3GAL4 ENSG00000110080 CDS Human protein_coding chr11:126283913 chr11:126283912 nonsynonymous SNV 0.943 0 20 hm7G_associated_SNPs_37945 0 0 0 0 1 ST3GAL4 chr11:126283856 3'AG 126283856 Downstream 57bp 34921 chr18 28918380 28918380 1 + C T STAD 28918381 + 28918361 28918401 41 AGGAACAGTACAATATGCTCGGAGGAAAATACCAAGGAACG AGGAACAGTACAATATGCTTGGAGGAAAATACCAAGGAACG < 41bp 0.49863104552438 0.70086698512738 NA NA prediction 0.40173397025476 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28918381 chr18:28918380 synonymous SNV . 0 20 hm7G_associated_SNPs_37947 0 0 0 0 1 DSG1 chr18:28918417 5'GT 28918417 Upstream 38bp 34922 chr3 169644898 169644898 1 + C T LUAD 169644899 + 169644879 169644919 41 GATGGGAAAGAGGAGGCTTCGGAGCAGATTTTTGCAACCTG GATGGGAAAGAGGAGGCTTTGGAGCAGATTTTTGCAACCTG < 41bp 0.534624223755951 0.735489960695095 NA NA prediction 0.401731473878287 Functional Gain - SAMD7 ENSG00000187033 CDS Human protein_coding chr3:169644899 chr3:169644898 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_37948 0 0 0 0 1 SAMD7 chr3:169644969 5'GT 169644969 Upstream 72bp 34923 chr1 897337 897337 1 + C T rs115985665 897338 + 897318 897358 41 CCGATGCGCACTCCTGCAGCGACCTGCTCAAGGCCGCCCAC CCGATGCGCACTCCTGCAGTGACCTGCTCAAGGCCGCCCAC < 41bp 0.546381771108824 0.747247003794576 NA NA prediction 0.401730465371504 Functional Gain - KLHL17 ENSG00000187961 CDS Human protein_coding chr1:897338 chr1:897337 synonymous SNV . 0 20 hm7G_associated_SNPs_37949 0 0 1 0 1 KLHL17 chr1:897427 5'GT 897427 Upstream 91bp 34924 chr1 46027472 46027472 1 + G A COAD 46027473 + 46027453 46027493 41 TGTTTCAGGGGGCAATGGCGGCTTCCTGTGTTCTACTGCAC TGTTTCAGGGGGCAATGGCAGCTTCCTGTGTTCTACTGCAC < 41bp 0.556576354034778 0.757439766624907 NA NA prediction 0.401726825180258 Functional Gain - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46027473 chr1:46027472 synonymous SNV . 0 20 hm7G_associated_SNPs_37950 0 0 1 0 2 AKR1A1 chr1:46027461 3'AG 46027461 Downstream 12bp 34925 chr1 46027472 46027472 1 + G A COAD 46027473 + 46027453 46027493 41 TGTTTCAGGGGGCAATGGCGGCTTCCTGTGTTCTACTGCAC TGTTTCAGGGGGCAATGGCAGCTTCCTGTGTTCTACTGCAC < 41bp 0.556576354034778 0.757439766624907 NA NA prediction 0.401726825180258 Functional Gain - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46027473 chr1:46027472 synonymous SNV . 0 20 hm7G_associated_SNPs_37950 0 0 1 0 2 AKR1A1 chr1:46027550 5'GT 46027550 Upstream 79bp 34926 chr3 195955761 195955761 1 + C T OV 195955762 + 195955742 195955782 41 CCCTGGTGGGCCTGTTTCTCGTCCCCGACGGCATCTATGAC CCCTGGTGGGCCTGTTTCTTGTCCCCGACGGCATCTATGAC < 41bp 0.520824898547487 0.721687834591774 NA NA prediction 0.401725872088574 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955762 chr3:195955761 synonymous SNV . 0 20 hm7G_associated_SNPs_37951 0 0 1 0 2 SLC51A chr3:195955680 3'AG 195955680 Downstream 82bp 34927 chr3 195955761 195955761 1 + C T OV 195955762 + 195955742 195955782 41 CCCTGGTGGGCCTGTTTCTCGTCCCCGACGGCATCTATGAC CCCTGGTGGGCCTGTTTCTTGTCCCCGACGGCATCTATGAC < 41bp 0.520824898547487 0.721687834591774 NA NA prediction 0.401725872088574 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955762 chr3:195955761 synonymous SNV . 0 20 hm7G_associated_SNPs_37951 0 0 1 0 2 SLC51A chr3:195955791 5'GT 195955791 Upstream 31bp 34928 chr10 73111532 73111532 1 + G A rs16928737 73111533 + 73111513 73111553 41 TTCCTATGAGGAACTCCCAGGCACTGATATCAGGTGAGAGC TTCCTATGAGGAACTCCCAAGCACTGATATCAGGTGAGAGC < 41bp 0.547467114526929 0.748328921475514 NA NA prediction 0.401723613897171 Functional Gain - SLC29A3 ENSG00000198246 CDS Human protein_coding chr10:73111533 chr10:73111532 synonymous SNV . 0 20 hm7G_associated_SNPs_37952 2 0 0 0 1 SLC29A3 chr10:73111545 5'GT 73111545 Upstream 14bp 34929 chr19 42218984 42218984 1 + C T rs115472929 42218985 + 42218965 42219005 41 GTGAACCTGAGACTCAGGACGCAACCTACCTGTGGTGGGTA GTGAACCTGAGACTCAGGATGCAACCTACCTGTGGTGGGTA < 41bp 0.518160947533557 0.719018197639814 NA NA prediction 0.401714500212514 Functional Gain - CEACAM5 ENSG00000105388 CDS Human protein_coding chr19:42218985 chr19:42218984 synonymous SNV . 0 20 hm7G_associated_SNPs_37956 0 0 0 0 1 CEACAM5 chr19:42218890 3'AG 42218890 Downstream 95bp 34930 chr2 1079274 1079274 1 + C T rs186675666 1079275 + 1079255 1079295 41 GACATCCGGCTGAAGCTGACGAAAGAGGTGCTGACAATTCA GACATCCGGCTGAAGCTGATGAAAGAGGTGCTGACAATTCA < 41bp 0.487009754067629 0.700857011060816 NA NA prediction 0.401714022121633 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1079275 chr2:1079274 nonsynonymous SNV 0.402 4 20 hm7G_associated_SNPs_37957 0 0 0 0 2 SNTG2 chr2:1079204 3'AG 1079204 Downstream 71bp 34931 chr2 1079274 1079274 1 + C T rs186675666 1079275 + 1079255 1079295 41 GACATCCGGCTGAAGCTGACGAAAGAGGTGCTGACAATTCA GACATCCGGCTGAAGCTGATGAAAGAGGTGCTGACAATTCA < 41bp 0.487009754067629 0.700857011060816 NA NA prediction 0.401714022121633 Functional Gain - SNTG2 ENSG00000172554 CDS Human protein_coding chr2:1079275 chr2:1079274 nonsynonymous SNV 0.402 4 20 hm7G_associated_SNPs_37957 0 0 0 0 2 SNTG2 chr2:1079341 5'GT 1079341 Upstream 68bp 34932 chr9 100132347 100132347 1 + C T PRAD 100132348 + 100132328 100132368 41 GTTCGAGGAACAGCAGAAGCGGCTGGAGAAAAGAAAGGTGA GTTCGAGGAACAGCAGAAGTGGCTGGAGAAAAGAAAGGTGA < 41bp 0.515962099436942 0.716818446834456 NA NA prediction 0.401712694795028 Functional Gain - CCDC180 ENSG00000197816 CDS Human protein_coding chr9:100132348 chr9:100132347 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_37958 0 0 0 0 1 CCDC180 chr9:100132364 5'GT 100132364 Upstream 18bp 34933 chrX 3002622 3002622 1 + C T UCEC 3002623 + 3002603 3002643 41 CTGGGACTGCCTCCTCATGCGGGGGCACGAGATCACGGAGC CTGGGACTGCCTCCTCATGTGGGGGCACGAGATCACGGAGC < 41bp 0.549553180103501 0.750407243552562 NA NA prediction 0.401708126898123 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:3002623 chrX:3002622 nonsynonymous SNV 0.238 4 20 hm7G_associated_SNPs_37962 0 0 0 0 1 ARSF chrX:3002707 5'GT 3002707 Upstream 86bp 34934 chr17 5071267 5071267 1 + C T CESC 5071268 + 5071248 5071288 41 GTGGAGCAGAGTCGGCGAGCGCAAGCCGAGCCCATCAACCT GTGGAGCAGAGTCGGCGAGTGCAAGCCGAGCCCATCAACCT < 41bp 0.486673205941365 0.700853689334118 NA NA prediction 0.401707378668235 Functional Gain - USP6 ENSG00000129204 CDS Human protein_coding chr17:5071268 chr17:5071267 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_37963 0 0 0 0 1 USP6 chr17:5071227 3'AG 5071227 Downstream 41bp 34935 chr9 96415638 96415638 1 + C T GBM 96415639 + 96415619 96415659 41 GCGCCTCTGCCTGGTACCACGTGCTCAAGGTGAGCCACGCC GCGCCTCTGCCTGGTACCATGTGCTCAAGGTGAGCCACGCC < 41bp 0.517621803036526 0.718474466575626 NA NA prediction 0.4017053270782 Functional Gain - PHF2 ENSG00000197724 CDS Human protein_coding chr9:96415639 chr9:96415638 synonymous SNV . 0 20 hm7G_associated_SNPs_37964 0 0 1 0 1 PHF2 chr9:96415647 5'GT 96415647 Upstream 10bp 34936 chr15 74564112 74564112 1 + C T rs562871794 74564113 + 74564093 74564133 41 TAGTGGTGATTGCCCGGGTCGTTCCCAACTACAAGGAATTT TAGTGGTGATTGCCCGGGTTGTTCCCAACTACAAGGAATTT < 41bp 0.525309468562951 0.726161204477288 NA NA prediction 0.401703471828676 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74564113 chr15:74564112 synonymous SNV . 0 20 hm7G_associated_SNPs_37965 0 0 0 0 2 CCDC33 chr15:74564044 3'AG 74564044 Downstream 69bp 34937 chr15 74564112 74564112 1 + C T rs562871794 74564113 + 74564093 74564133 41 TAGTGGTGATTGCCCGGGTCGTTCCCAACTACAAGGAATTT TAGTGGTGATTGCCCGGGTTGTTCCCAACTACAAGGAATTT < 41bp 0.525309468562951 0.726161204477288 NA NA prediction 0.401703471828676 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74564113 chr15:74564112 synonymous SNV . 0 20 hm7G_associated_SNPs_37965 0 0 0 0 2 CCDC33 chr15:74564135 5'GT 74564135 Upstream 24bp 34938 chr16 336396 336396 1 + G A rs400037 336397 + 336377 336417 41 CCCCCTGATTGGGATCAGCGGCCAGTTAAGACCCTCGTGGG CCCCCTGATTGGGATCAGCAGCCAGTTAAGACCCTCGTGGG < 41bp 0.574238184897447 0.775089695022602 NA NA prediction 0.401703020250311 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336397 chr16:336396 nonsynonymous SNV 0.129 0 20 hm7G_associated_SNPs_37966 0 0 0 0 2 PDIA2 chr16:336353 3'AG 336353 Downstream 44bp 34939 chr16 336396 336396 1 + G A rs400037 336397 + 336377 336417 41 CCCCCTGATTGGGATCAGCGGCCAGTTAAGACCCTCGTGGG CCCCCTGATTGGGATCAGCAGCCAGTTAAGACCCTCGTGGG < 41bp 0.574238184897447 0.775089695022602 NA NA prediction 0.401703020250311 Functional Gain - PDIA2 ENSG00000185615 CDS Human protein_coding chr16:336397 chr16:336396 nonsynonymous SNV 0.129 0 20 hm7G_associated_SNPs_37966 0 0 0 0 2 PDIA2 chr16:336473 5'GT 336473 Upstream 78bp 34940 chr2 25039615 25039615 1 + C T rs146239018 25039616 + 25039596 25039636 41 CCAGGGGGTCAGTCCTTCCCGTTCTGTGCTAGATTGCTGTA CCAGGGGGTCAGTCCTTCCTGTTCTGTGCTAGATTGCTGTA < 41bp 0.520443217392067 0.721294073912457 NA NA prediction 0.40170171304078 Functional Gain - CENPO ENSG00000138092 CDS Human protein_coding chr2:25039616 chr2:25039615 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_37967 0 0 1 0 1 CENPO chr2:25039686 5'GT 25039686 Upstream 72bp 34941 chr19 49464132 49464132 1 + G A UCEC 49464133 + 49464113 49464153 41 GGACATTGGACTTCCTCCGGGAGCGGCTGTTGGGCTGGATC GGACATTGGACTTCCTCCGAGAGCGGCTGTTGGGCTGGATC < 41bp 0.489788843609751 0.700850767963754 NA NA prediction 0.401701535927507 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49464133 chr19:49464132 synonymous SNV . 0 20 hm7G_associated_SNPs_37968 0 0 1 0 2 BAX chr19:49464067 3'AG 49464067 Downstream 66bp 34942 chr19 49464132 49464132 1 + G A UCEC 49464133 + 49464113 49464153 41 GGACATTGGACTTCCTCCGGGAGCGGCTGTTGGGCTGGATC GGACATTGGACTTCCTCCGAGAGCGGCTGTTGGGCTGGATC < 41bp 0.489788843609751 0.700850767963754 NA NA prediction 0.401701535927507 Functional Gain - BAX ENSG00000087088 CDS Human protein_coding chr19:49464133 chr19:49464132 synonymous SNV . 0 20 hm7G_associated_SNPs_37968 0 0 1 0 2 BAX chr19:49464171 5'GT 49464171 Upstream 40bp 34943 chr1 165623555 165623555 1 + C T STAD 165623556 + 165623536 165623576 41 CTTGGCCTGGATTGTTGGACGAGTTCTTTATGCTTATGGCT CTTGGCCTGGATTGTTGGATGAGTTCTTTATGCTTATGGCT < 41bp 0.538116373154233 0.738965875154781 NA NA prediction 0.401699004001096 Functional Gain - MGST3 ENSG00000143198 CDS Human protein_coding chr1:165623556 chr1:165623555 stopgain 0.999 1 20 hm7G_associated_SNPs_37969 0 0 1 0 1 MGST3 chr1:165623588 5'GT 165623588 Upstream 34bp 34944 chr10 70696828 70696828 1 + C T STAD 70696829 + 70696809 70696849 41 TGCATCAAGCTTTGAACCACGATCTTTGATCACCTCTGATA TGCATCAAGCTTTGAACCATGATCTTTGATCACCTCTGATA < 41bp 0.52795199804584 0.728800875161304 NA NA prediction 0.401697754230926 Functional Gain - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70696829 chr10:70696828 stopgain 1.000 1 20 hm7G_associated_SNPs_37971 0 0 1 0 1 DDX50 chr10:70696851 5'GT 70696851 Upstream 24bp 34945 chr3 36534690 36534690 1 + C T STAD 36534691 + 36534671 36534711 41 AAGCCAATGGGCCAGGAGGCGGGTATGACCTAAGGAAACGC AAGCCAATGGGCCAGGAGGTGGGTATGACCTAAGGAAACGC < 41bp 0.560594893941931 0.76144198009534 NA NA prediction 0.401694172306819 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36534691 chr3:36534690 synonymous SNV . 0 20 hm7G_associated_SNPs_37972 0 0 0 0 2 STAC chr3:36534643 3'AG 36534643 Downstream 48bp 34946 chr3 36534690 36534690 1 + C T STAD 36534691 + 36534671 36534711 41 AAGCCAATGGGCCAGGAGGCGGGTATGACCTAAGGAAACGC AAGCCAATGGGCCAGGAGGTGGGTATGACCTAAGGAAACGC < 41bp 0.560594893941931 0.76144198009534 NA NA prediction 0.401694172306819 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36534691 chr3:36534690 synonymous SNV . 0 20 hm7G_associated_SNPs_37972 0 0 0 0 2 STAC chr3:36534721 5'GT 36534721 Upstream 32bp 34947 chr17 6902727 6902727 1 + G A LUAD 6902728 + 6902708 6902748 41 TCGACCTCTCTGCCCTCCAGGCTAGTGCTGCCCTCGGGGAT TCGACCTCTCTGCCCTCCAAGCTAGTGCTGCCCTCGGGGAT < 41bp 0.568374776667616 0.769218957262132 NA NA prediction 0.401688361189033 Functional Gain - ALOX12 ENSG00000108839;ENSG00000108839 exonic;splicing Human protein_coding chr17:6902728 chr17:6902727 nonsynonymous SNV 0.966 0 20 hm7G_associated_SNPs_37974 0 0 0 0 1 ALOX12 chr17:6902785 5'GT 6902785 Upstream 59bp 34948 chr16 69988301 69988301 1 + C T SKCM 69988302 + 69988282 69988322 41 CTCTGTGGAACCCCAACCCCGAGCCTGGCGTCCGGCCTGTG CTCTGTGGAACCCCAACCCTGAGCCTGGCGTCCGGCCTGTG < 41bp 0.530018158429905 0.730862335084653 NA NA prediction 0.401688353309496 Functional Gain - CLEC18A ENSG00000157322 CDS Human protein_coding chr16:69988302 chr16:69988301 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_37975 0 0 0 0 1 CLEC18A chr16:69988237 3'AG 69988237 Downstream 65bp 34949 chr14 24629560 24629560 1 + C T HNSC 24629561 + 24629541 24629581 41 TGAGCGCTACCTGCACGTACGCCCCCAGCCTTTGGCTGGAG TGAGCGCTACCTGCACGTATGCCCCCAGCCTTTGGCTGGAG < 41bp 0.48996422909015 0.700841562250707 NA NA prediction 0.401683124501415 Functional Gain - RNF31 ENSG00000092098;ENSG00000259529 CDS Human other chr14:24629561 chr14:24629560 nonsynonymous SNV 0.012 0 20 hm7G_associated_SNPs_37977 0 0 0 0 1 RNF31 chr14:24629616 5'GT 24629616 Upstream 57bp 34950 chr14 77685294 77685294 1 + C T SKCM 77685295 + 77685275 77685315 41 CCGTGCTGTGCCTCAACATCGCCCTGTGGGTGGTGAGTCCT CCGTGCTGTGCCTCAACATTGCCCTGTGGGTGGTGAGTCCT < 41bp 0.495598441812711 0.700841440680943 NA NA prediction 0.401682881361887 Functional Gain - TMEM63C ENSG00000165548 CDS Human protein_coding chr14:77685295 chr14:77685294 synonymous SNV . 0 20 hm7G_associated_SNPs_37978 0 0 0 0 1 TMEM63C chr14:77685306 5'GT 77685306 Upstream 13bp 34951 chr4 186064572 186064572 1 + G T UCEC 186064573 + 186064553 186064593 41 AAAGGACTTCCTGGCCGGGGGCGTCGCCGCTGCCGTCTCCA AAAGGACTTCCTGGCCGGGTGCGTCGCCGCTGCCGTCTCCA < 41bp 0.711043921303563 0.911884185302124 NA NA prediction 0.401680527997123 Functional Gain - SLC25A4 ENSG00000151729 CDS Human protein_coding chr4:186064573 chr4:186064572 nonsynonymous SNV 0.083 4 20 hm7G_associated_SNPs_37979 0 0 1 0 1 SLC25A4 chr4:186064637 5'GT 186064637 Upstream 66bp 34952 chr22 21380166 21380166 1 + C T UCEC 21380167 + 21380147 21380187 41 AGCTCTATGGAATCCGCTTCGACATCCTCGTCACCGGGCAG AGCTCTATGGAATCCGCTTTGACATCCTCGTCACCGGGCAG < 41bp 0.487804021423151 0.700839328227225 NA NA prediction 0.401678656454449 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21380167 chr22:21380166 synonymous SNV . 0 20 hm7G_associated_SNPs_37980 0 0 0 0 2 P2RX6 chr22:21380094 3'AG 21380094 Downstream 73bp 34953 chr22 21380166 21380166 1 + C T UCEC 21380167 + 21380147 21380187 41 AGCTCTATGGAATCCGCTTCGACATCCTCGTCACCGGGCAG AGCTCTATGGAATCCGCTTTGACATCCTCGTCACCGGGCAG < 41bp 0.487804021423151 0.700839328227225 NA NA prediction 0.401678656454449 Functional Gain - P2RX6 ENSG00000099957 CDS Human protein_coding chr22:21380167 chr22:21380166 synonymous SNV . 0 20 hm7G_associated_SNPs_37980 0 0 0 0 2 P2RX6 chr22:21380187 5'GT 21380187 Upstream 22bp 34954 chr15 89020237 89020237 1 + C T CESC 89020238 + 89020218 89020258 41 AGAGAGCTAAACAAAAGGGCGTGATCCACATCCGAGTTGTG AGAGAGCTAAACAAAAGGGTGTGATCCACATCCGAGTTGTG < 41bp 0.506806610987656 0.707644937630239 NA NA prediction 0.401676653285166 Functional Gain - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89020238 chr15:89020237 synonymous SNV . 0 20 hm7G_associated_SNPs_37981 0 0 0 0 2 MRPS11 chr15:89020220 3'AG 89020220 Downstream 18bp 34955 chr15 89020237 89020237 1 + C T CESC 89020238 + 89020218 89020258 41 AGAGAGCTAAACAAAAGGGCGTGATCCACATCCGAGTTGTG AGAGAGCTAAACAAAAGGGTGTGATCCACATCCGAGTTGTG < 41bp 0.506806610987656 0.707644937630239 NA NA prediction 0.401676653285166 Functional Gain - MRPS11 ENSG00000181991 CDS Human protein_coding chr15:89020238 chr15:89020237 synonymous SNV . 0 20 hm7G_associated_SNPs_37981 0 0 0 0 2 MRPS11 chr15:89020285 5'GT 89020285 Upstream 49bp 34956 chr13 25276130 25276130 1 + G A OV 25276131 + 25276111 25276151 41 AGCTATTGCCAAGAGTGTGGGGATCATTTCAGCCAACAGTG AGCTATTGCCAAGAGTGTGAGGATCATTTCAGCCAACAGTG < 41bp 0.536502117553947 0.73734028044398 NA NA prediction 0.401676325780066 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25276131 chr13:25276130 nonsynonymous SNV 0.014 5 20 hm7G_associated_SNPs_37983 0 0 0 0 2 ATP12A chr13:25276073 3'AG 25276073 Downstream 58bp 34957 chr13 25276130 25276130 1 + G A OV 25276131 + 25276111 25276151 41 AGCTATTGCCAAGAGTGTGGGGATCATTTCAGCCAACAGTG AGCTATTGCCAAGAGTGTGAGGATCATTTCAGCCAACAGTG < 41bp 0.536502117553947 0.73734028044398 NA NA prediction 0.401676325780066 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25276131 chr13:25276130 nonsynonymous SNV 0.014 5 20 hm7G_associated_SNPs_37983 0 0 0 0 2 ATP12A chr13:25276209 5'GT 25276209 Upstream 80bp 34958 chr9 97209106 97209106 1 + C T SKCM 97209107 + 97209087 97209127 41 CTTTCTGCTTATTCTCAGTCGTTGAAGAAAGTTGGAAAAGA CTTTCTGCTTATTCTCAGTTGTTGAAGAAAGTTGGAAAAGA < 41bp 0.509514117825041 0.710349646805639 NA NA prediction 0.401671057961198 Functional Gain - MFSD14B ENSG00000148110 CDS Human protein_coding chr9:97209107 chr9:97209106 nonsynonymous SNV 0.743 2 20 hm7G_associated_SNPs_37984 0 0 1 0 1 MFSD14B chr9:97209105 3'AG 97209105 Downstream 2bp 34959 chr7 4823896 4823896 1 + C T UCEC 4823897 + 4823877 4823917 41 TCTTCACGGTGCTCTCCAGCGGCCACCGCTTCACAGACGAC TCTTCACGGTGCTCTCCAGTGGCCACCGCTTCACAGACGAC < 41bp 0.538020062915912 0.738851266937156 NA NA prediction 0.401662408042488 Functional Gain - AP5Z1 ENSG00000242802 CDS Human protein_coding chr7:4823897 chr7:4823896 synonymous SNV . 0 20 hm7G_associated_SNPs_37986 0 0 1 0 1 AP5Z1 chr7:4823834 3'AG 4823834 Downstream 63bp 34960 chr16 24918063 24918063 1 + C T UCEC 24918064 + 24918044 24918084 41 ACATCGCGTATCCCAAACTCGTGCTGGAACTCCTGCCCACA ACATCGCGTATCCCAAACTTGTGCTGGAACTCCTGCCCACA < 41bp 0.506126679254201 0.706957578857907 NA NA prediction 0.401661799207412 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24918064 chr16:24918063 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_37987 0 0 0 0 2 SLC5A11 chr16:24917978 3'AG 24917978 Downstream 86bp 34961 chr16 24918063 24918063 1 + C T UCEC 24918064 + 24918044 24918084 41 ACATCGCGTATCCCAAACTCGTGCTGGAACTCCTGCCCACA ACATCGCGTATCCCAAACTTGTGCTGGAACTCCTGCCCACA < 41bp 0.506126679254201 0.706957578857907 NA NA prediction 0.401661799207412 Functional Gain - SLC5A11 ENSG00000158865 CDS Human protein_coding chr16:24918064 chr16:24918063 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_37987 0 0 0 0 2 SLC5A11 chr16:24918085 5'GT 24918085 Upstream 23bp 34962 chr10 121207763 121207763 1 + C T SKCM 121207764 + 121207744 121207784 41 GGATGTTGGACCCTCCCTTCGTTCCAGACGTGAGTAGCCTC GGATGTTGGACCCTCCCTTTGTTCCAGACGTGAGTAGCCTC < 41bp 0.517238578334416 0.718069373219065 NA NA prediction 0.401661589769297 Functional Gain - GRK5 ENSG00000198873 CDS Human protein_coding chr10:121207764 chr10:121207763 synonymous SNV . 0 20 hm7G_associated_SNPs_37988 0 0 0 0 1 GRK5 chr10:121207772 5'GT 121207772 Upstream 10bp 34963 chr7 72742627 72742627 1 + G A rs201144674 72742628 + 72742608 72742648 41 CTGGACATCTCGGGGGACCGGGGCGTGCTGAAGGACGTCAT CTGGACATCTCGGGGGACCAGGGCGTGCTGAAGGACGTCAT < 41bp 0.562820214998276 0.763648263066615 NA NA prediction 0.401656096136678 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72742628 chr7:72742627 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_37990 0 0 0 0 2 FKBP6 chr7:72742578 3'AG 72742578 Downstream 50bp 34964 chr7 72742627 72742627 1 + G A rs201144674 72742628 + 72742608 72742648 41 CTGGACATCTCGGGGGACCGGGGCGTGCTGAAGGACGTCAT CTGGACATCTCGGGGGACCAGGGCGTGCTGAAGGACGTCAT < 41bp 0.562820214998276 0.763648263066615 NA NA prediction 0.401656096136678 Functional Gain - FKBP6 ENSG00000077800 CDS Human protein_coding chr7:72742628 chr7:72742627 nonsynonymous SNV 0.998 0 20 hm7G_associated_SNPs_37990 0 0 0 0 2 FKBP6 chr7:72742695 5'GT 72742695 Upstream 69bp 34965 chr1 45190819 45190819 1 + G T UCEC 45190820 + 45190800 45190840 41 GTCCTCAGAGCAACGCTGAGGACTTGTACATGAAAATAGAC GTCCTCAGAGCAACGCTGATGACTTGTACATGAAAATAGAC < 41bp 0.358737626484657 0.700826603000862 NA NA prediction 0.401653206001724 Functional Gain - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45190820 chr1:45190819 nonsynonymous SNV 0.495 0 20 hm7G_associated_SNPs_37992 0 0 0 0 2 C1orf228 chr1:45190808 3'AG 45190808 Downstream 12bp 34966 chr1 45190819 45190819 1 + G T UCEC 45190820 + 45190800 45190840 41 GTCCTCAGAGCAACGCTGAGGACTTGTACATGAAAATAGAC GTCCTCAGAGCAACGCTGATGACTTGTACATGAAAATAGAC < 41bp 0.358737626484657 0.700826603000862 NA NA prediction 0.401653206001724 Functional Gain - C1orf228 ENSG00000198520 CDS Human protein_coding chr1:45190820 chr1:45190819 nonsynonymous SNV 0.495 0 20 hm7G_associated_SNPs_37992 0 0 0 0 2 C1orf228 chr1:45190889 5'GT 45190889 Upstream 71bp 34967 chr12 102025861 102025861 1 + C T COAD 102025862 + 102025842 102025882 41 TTGCAGGAAATTACAGATGCGAGGTCACCTATAAGGATAAG TTGCAGGAAATTACAGATGTGAGGTCACCTATAAGGATAAG < 41bp 0.53064170365231 0.73146771399811 NA NA prediction 0.401652020691601 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102025862 chr12:102025861 synonymous SNV . 0 20 hm7G_associated_SNPs_37994 0 0 0 0 2 MYBPC1 chr12:102025799 3'AG 102025799 Downstream 63bp 34968 chr12 102025861 102025861 1 + C T COAD 102025862 + 102025842 102025882 41 TTGCAGGAAATTACAGATGCGAGGTCACCTATAAGGATAAG TTGCAGGAAATTACAGATGTGAGGTCACCTATAAGGATAAG < 41bp 0.53064170365231 0.73146771399811 NA NA prediction 0.401652020691601 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102025862 chr12:102025861 synonymous SNV . 0 20 hm7G_associated_SNPs_37994 0 0 0 0 2 MYBPC1 chr12:102025916 5'GT 102025916 Upstream 56bp 34969 chr21 44441508 44441508 1 + C T UCEC 44441509 + 44441489 44441529 41 TGCCAAAGCATGCCACGAACGTGATGCGGTCCTGGCTCTTC TGCCAAAGCATGCCACGAATGTGATGCGGTCCTGGCTCTTC < 41bp 0.49999685018564 0.700825845077202 NA NA prediction 0.401651690154403 Functional Gain - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44441509 chr21:44441508 synonymous SNV . 0 20 hm7G_associated_SNPs_37995 0 0 1 0 2 PKNOX1 chr21:44441413 3'AG 44441413 Downstream 96bp 34970 chr21 44441508 44441508 1 + C T UCEC 44441509 + 44441489 44441529 41 TGCCAAAGCATGCCACGAACGTGATGCGGTCCTGGCTCTTC TGCCAAAGCATGCCACGAATGTGATGCGGTCCTGGCTCTTC < 41bp 0.49999685018564 0.700825845077202 NA NA prediction 0.401651690154403 Functional Gain - PKNOX1 ENSG00000160199 CDS Human protein_coding chr21:44441509 chr21:44441508 synonymous SNV . 0 20 hm7G_associated_SNPs_37995 0 0 1 0 2 PKNOX1 chr21:44441541 5'GT 44441541 Upstream 34bp 34971 chr11 113146033 113146033 1 + C T rs17174409 113146034 + 113146014 113146054 41 GAGTGCCAGGAGACAGAAACGAAGCCAGCGCCAGCCGAAGT GAGTGCCAGGAGACAGAAATGAAGCCAGCGCCAGCCGAAGT < 41bp 0.492799500457416 0.700822150488006 NA NA prediction 0.401644300976011 Functional Gain - NCAM1 ENSG00000149294 CDS Human protein_coding chr11:113146034 chr11:113146033 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_37996 0 0 0 0 1 NCAM1 chr11:113145989 3'AG 113145989 Downstream 45bp 34972 chr22 23655102 23655102 1 + C T CESC 23655103 + 23655083 23655123 41 ACGTGTCGGTGATGATGAGCGAGATGGACGTGAACGCCATC ACGTGTCGGTGATGATGAGTGAGATGGACGTGAACGCCATC < 41bp 0.538432461479192 0.73925456471524 NA NA prediction 0.401644206472096 Functional Gain - BCR ENSG00000186716 CDS Human protein_coding chr22:23655103 chr22:23655102 synonymous SNV . 0 20 hm7G_associated_SNPs_37997 0 0 0 0 1 BCR chr22:23655074 3'AG 23655074 Downstream 29bp 34973 chr11 66255407 66255407 1 + G A CESC 66255408 + 66255388 66255428 41 CTCAGTGCCTACAACACCCGGCTCTTCAAAGAGGTCGATGG CTCAGTGCCTACAACACCCAGCTCTTCAAAGAGGTCGATGG < 41bp 0.596382902847458 0.797203644608686 NA NA prediction 0.401641483522454 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66255408 chr11:66255407 nonsynonymous SNV 0.898 4 20 hm7G_associated_SNPs_37999 0 0 0 0 2 DPP3 chr11:66255385 3'AG 66255385 Downstream 23bp 34974 chr11 66255407 66255407 1 + G A CESC 66255408 + 66255388 66255428 41 CTCAGTGCCTACAACACCCGGCTCTTCAAAGAGGTCGATGG CTCAGTGCCTACAACACCCAGCTCTTCAAAGAGGTCGATGG < 41bp 0.596382902847458 0.797203644608686 NA NA prediction 0.401641483522454 Functional Gain - DPP3 ENSG00000254986 CDS Human protein_coding chr11:66255408 chr11:66255407 nonsynonymous SNV 0.898 4 20 hm7G_associated_SNPs_37999 0 0 0 0 2 DPP3 chr11:66255478 5'GT 66255478 Upstream 72bp 34975 chr17 72923350 72923350 1 + C T UCEC 72923351 + 72923331 72923371 41 GGGTCTCTGCTAAAGACTGCGTTCACGTCCACCTGGATCTG GGGTCTCTGCTAAAGACTGTGTTCACGTCCACCTGGATCTG < 41bp 0.503296259640385 0.704109932635085 NA NA prediction 0.401627345989401 Functional Gain - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72923351 chr17:72923350 synonymous SNV . 0 20 hm7G_associated_SNPs_38001 0 0 0 0 2 OTOP2 chr17:72923318 3'AG 72923318 Downstream 33bp 34976 chr17 72923350 72923350 1 + C T UCEC 72923351 + 72923331 72923371 41 GGGTCTCTGCTAAAGACTGCGTTCACGTCCACCTGGATCTG GGGTCTCTGCTAAAGACTGTGTTCACGTCCACCTGGATCTG < 41bp 0.503296259640385 0.704109932635085 NA NA prediction 0.401627345989401 Functional Gain - OTOP2 ENSG00000183034 CDS Human protein_coding chr17:72923351 chr17:72923350 synonymous SNV . 0 20 hm7G_associated_SNPs_38001 0 0 0 0 2 OTOP2 chr17:72923376 5'GT 72923376 Upstream 27bp 34977 chr4 47033973 47033973 1 + G T LUAD 47033974 + 47033954 47033994 41 CATACGTGAAAGAGACAGTGGACAGATTGCTCAAAGGATAT CATACGTGAAAGAGACAGTTGACAGATTGCTCAAAGGATAT < 41bp 0.361673147946714 0.700807905633386 NA NA prediction 0.401615811266773 Functional Gain - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47033974 chr4:47033973 synonymous SNV . 0 20 hm7G_associated_SNPs_38005 0 0 0 0 2 GABRB1 chr4:47033931 3'AG 47033931 Downstream 43bp 34978 chr4 47033973 47033973 1 + G T LUAD 47033974 + 47033954 47033994 41 CATACGTGAAAGAGACAGTGGACAGATTGCTCAAAGGATAT CATACGTGAAAGAGACAGTTGACAGATTGCTCAAAGGATAT < 41bp 0.361673147946714 0.700807905633386 NA NA prediction 0.401615811266773 Functional Gain - GABRB1 ENSG00000163288 CDS Human protein_coding chr4:47033974 chr4:47033973 synonymous SNV . 0 20 hm7G_associated_SNPs_38005 0 0 0 0 2 GABRB1 chr4:47034022 5'GT 47034022 Upstream 50bp 34979 chr15 99874192 99874192 1 + C T SKCM 99874193 + 99874173 99874213 41 ATCGTTTGCTAACTTTACCCGAGAGGCTTCACATGTGCCTT ATCGTTTGCTAACTTTACCTGAGAGGCTTCACATGTGCCTT < 41bp 0.49123466001721 0.700807901940624 NA NA prediction 0.401615803881248 Functional Gain - LRRC28 ENSG00000168904 CDS Human protein_coding chr15:99874193 chr15:99874192 synonymous SNV . 0 20 hm7G_associated_SNPs_38006 0 0 0 0 1 LRRC28 chr15:99874128 3'AG 99874128 Downstream 65bp 34980 chr9 90342619 90342619 1 + C T UCEC 90342620 + 90342600 90342640 41 CAGTGGACCAAGTGGAAGGCGATGCACAACAGATTATACGG CAGTGGACCAAGTGGAAGGTGATGCACAACAGATTATACGG < 41bp 0.534810988654908 0.735617600901793 NA NA prediction 0.401613224493769 Functional Gain - CTSL;CTSL ENSG00000135047 CDS Human protein_coding chr9:90342620 chr9:90342619 nonsynonymous SNV 0.023 1 20 hm7G_associated_SNPs_38007 0 0 1 0 1 CTSL chr9:90342644 5'GT 90342644 Upstream 26bp 34981 chr16 31501643 31501643 1 + G A GBM 31501644 + 31501624 31501664 41 CCTCAGAGCCCCAGGCCCCGGCACCAAGCCTCTTCCGCCAG CCTCAGAGCCCCAGGCCCCAGCACCAAGCCTCTTCCGCCAG < 41bp 0.478455182258709 0.700805805948019 NA NA prediction 0.401611611896039 Functional Gain - SLC5A2 ENSG00000140675 CDS Human protein_coding chr16:31501644 chr16:31501643 synonymous SNV . 0 20 hm7G_associated_SNPs_38009 0 0 0 0 1 SLC5A2 chr16:31501630 3'AG 31501630 Downstream 14bp 34982 chr14 69697274 69697274 1 + C T CESC 69697275 + 69697255 69697295 41 TGACAAGTCCCTTCTACTTCGTTGCAGCAACTGGGATGCTG TGACAAGTCCCTTCTACTTTGTTGCAGCAACTGGGATGCTG < 41bp 0.523166882925572 0.723972378391043 NA NA prediction 0.401610990930943 Functional Gain - EXD2 ENSG00000081177 CDS Human protein_coding chr14:69697275 chr14:69697274 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_38010 0 0 1 1 2 EXD2 chr14:69697189 3'AG 69697189 Downstream 86bp 34983 chr14 69697274 69697274 1 + C T CESC 69697275 + 69697255 69697295 41 TGACAAGTCCCTTCTACTTCGTTGCAGCAACTGGGATGCTG TGACAAGTCCCTTCTACTTTGTTGCAGCAACTGGGATGCTG < 41bp 0.523166882925572 0.723972378391043 NA NA prediction 0.401610990930943 Functional Gain - EXD2 ENSG00000081177 CDS Human protein_coding chr14:69697275 chr14:69697274 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_38010 0 0 1 1 2 EXD2 chr14:69697315 5'GT 69697315 Upstream 42bp 34984 chr14 69993426 69993426 1 + C T COAD 69993427 + 69993407 69993447 41 CCTACAGGATGAAGGAGAACGAGGAGCGCTCACGGGCCCTG CCTACAGGATGAAGGAGAATGAGGAGCGCTCACGGGCCCTG < 41bp 0.497633600638703 0.700805102244833 NA NA prediction 0.401610204489667 Functional Gain - PLEKHD1 ENSG00000175985 CDS Human protein_coding chr14:69993427 chr14:69993426 synonymous SNV . 0 20 hm7G_associated_SNPs_38011 0 0 0 0 1 PLEKHD1 chr14:69993414 3'AG 69993414 Downstream 13bp 34985 chr2 153575519 153575519 1 + C T CESC 153575520 + 153575500 153575540 41 TCGCCTTCCTCCTCGCCATCGCCTACTTGATCGTTAAAGGT TCGCCTTCCTCCTCGCCATTGCCTACTTGATCGTTAAAGGT < 41bp 0.502294340706389 0.70309744318978 NA NA prediction 0.401606204966782 Functional Gain - ARL6IP6 ENSG00000177917 CDS Human protein_coding chr2:153575520 chr2:153575519 synonymous SNV . 0 20 hm7G_associated_SNPs_38012 0 0 1 0 1 ARL6IP6 chr2:153575538 5'GT 153575538 Upstream 20bp 34986 chr18 55020217 55020217 1 + C T COAD 55020218 + 55020198 55020238 41 ACTCCCAAGTACGCCAGCCCGGGGGCGCCCCGAATGTACAT ACTCCCAAGTACGCCAGCCTGGGGGCGCCCCGAATGTACAT < 41bp 0.495482762345624 0.700802591443989 NA NA prediction 0.401605182887978 Functional Gain - ST8SIA3 ENSG00000177511 CDS Human protein_coding chr18:55020218 chr18:55020217 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_38013 0 0 0 0 1 ST8SIA3 chr18:55020256 5'GT 55020256 Upstream 40bp 34987 chr13 113719264 113719264 1 + C T ACC 113719265 + 113719245 113719285 41 CCAAGGCCATCGAAAGTTTCGCCCTCATGGTGAAGCAGACG CCAAGGCCATCGAAAGTTTTGCCCTCATGGTGAAGCAGACG < 41bp 0.53142439277184 0.732225558110031 NA NA prediction 0.401602330676384 Functional Gain - MCF2L ENSG00000126217 CDS Human protein_coding chr13:113719265 chr13:113719264 synonymous SNV . 0 20 hm7G_associated_SNPs_38016 0 0 0 0 1 MCF2L chr13:113719250 3'AG 113719250 Downstream 15bp 34988 chr11 60565933 60565933 1 + C T ESCA 60565934 + 60565914 60565954 41 GGCCTGCCGGTGGAGCCCCCGCCATCCTACCAGAGTGTGAT GGCCTGCCGGTGGAGCCCCTGCCATCCTACCAGAGTGTGAT < 41bp 0.493194135697922 0.700800414673265 NA NA prediction 0.401600829346529 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60565934 chr11:60565933 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_38017 0 0 0 0 2 MS4A10 chr11:60565869 3'AG 60565869 Downstream 65bp 34989 chr11 60565933 60565933 1 + C T ESCA 60565934 + 60565914 60565954 41 GGCCTGCCGGTGGAGCCCCCGCCATCCTACCAGAGTGTGAT GGCCTGCCGGTGGAGCCCCTGCCATCCTACCAGAGTGTGAT < 41bp 0.493194135697922 0.700800414673265 NA NA prediction 0.401600829346529 Functional Gain - MS4A10 ENSG00000172689 CDS Human protein_coding chr11:60565934 chr11:60565933 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_38017 0 0 0 0 2 MS4A10 chr11:60565987 5'GT 60565987 Upstream 55bp 34990 chr17 79967066 79967066 1 + C T READ 79967067 + 79967047 79967087 41 GGCCCAGCTCAAGAGTGAGCGGTGGGTGCCCCCTCAGTGCC GGCCCAGCTCAAGAGTGAGTGGTGGGTGCCCCCTCAGTGCC < 41bp 0.517511420538453 0.718307841676796 NA NA prediction 0.401592842276687 Functional Gain - ASPSCR1 ENSG00000169696 CDS Human protein_coding chr17:79967067 chr17:79967066 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38021 0 0 1 0 1 ASPSCR1 chr17:79967067 5'GT 79967067 Upstream 2bp 34991 chr14 67831653 67831653 1 + C T SKCM 67831654 + 67831634 67831674 41 ATTATCCAGAAGGCGTATCCGTTCTATCAACAAACTCATCC ATTATCCAGAAGGCGTATCTGTTCTATCAACAAACTCATCC < 41bp 0.522563697035913 0.723359384420219 NA NA prediction 0.401591374768611 Functional Gain - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67831654 chr14:67831653 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38022 0 0 1 0 1 EIF2S1 chr14:67831725 5'GT 67831725 Upstream 73bp 34992 chr20 13098249 13098249 1 + C T UCEC 13098250 + 13098230 13098270 41 AAGCTCACAGTATTGGGGCCGTGGGCCCAACCGGCCGGGGT AAGCTCACAGTATTGGGGCTGTGGGCCCAACCGGCCGGGGT < 41bp 0.538298365584224 0.739091697648311 NA NA prediction 0.401586664128175 Functional Gain - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13098250 chr20:13098249 synonymous SNV . 0 20 hm7G_associated_SNPs_38024 0 0 1 0 1 SPTLC3 chr20:13098153 3'AG 13098153 Downstream 97bp 34993 chr5 36684073 36684073 1 + C T LIHC 36684074 + 36684054 36684094 41 CTGCCCACTGACGACATCACGCTCATCATCGCGGTGGACTG CTGCCCACTGACGACATCATGCTCATCATCGCGGTGGACTG < 41bp 0.541503880027483 0.742295088788334 NA NA prediction 0.401582417521703 Functional Gain - SLC1A3 ENSG00000079215 CDS Human protein_coding chr5:36684074 chr5:36684073 nonsynonymous SNV 0.964 4 20 hm7G_associated_SNPs_38025 0 0 0 0 1 SLC1A3 chr5:36684100 5'GT 36684100 Upstream 28bp 34994 chr2 43958705 43958705 1 + C T PAAD 43958706 + 43958686 43958726 41 CTCTGACAACTCTACCTTCCGAAGCCCTGCAGACAGAAGCT CTCTGACAACTCTACCTTCTGAAGCCCTGCAGACAGAAGCT < 41bp 0.535536153207364 0.736327203736739 NA NA prediction 0.40158210105875 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43958706 chr2:43958705 synonymous SNV . 0 20 hm7G_associated_SNPs_38027 0 0 0 0 2 PLEKHH2 chr2:43958629 3'AG 43958629 Downstream 77bp 34995 chr2 43958705 43958705 1 + C T PAAD 43958706 + 43958686 43958726 41 CTCTGACAACTCTACCTTCCGAAGCCCTGCAGACAGAAGCT CTCTGACAACTCTACCTTCTGAAGCCCTGCAGACAGAAGCT < 41bp 0.535536153207364 0.736327203736739 NA NA prediction 0.40158210105875 Functional Gain - PLEKHH2 ENSG00000152527 CDS Human protein_coding chr2:43958706 chr2:43958705 synonymous SNV . 0 20 hm7G_associated_SNPs_38027 0 0 0 0 2 PLEKHH2 chr2:43958741 5'GT 43958741 Upstream 37bp 34996 chr15 58471486 58471486 1 + C T UCEC 58471487 + 58471467 58471507 41 CTGTGCCATGAACCCAGCTCGAGACCTGAGTCCCAGACTTT CTGTGCCATGAACCCAGCTTGAGACCTGAGTCCCAGACTTT < 41bp 0.543382631197197 0.744172804500693 NA NA prediction 0.40158034660699 Functional Gain - AQP9 ENSG00000103569 CDS Human protein_coding chr15:58471487 chr15:58471486 stopgain 0.997 1 20 hm7G_associated_SNPs_38028 0 0 0 0 1 AQP9 chr15:58471544 5'GT 58471544 Upstream 59bp 34997 chr12 49717459 49717459 1 + C T SKCM 49717460 + 49717440 49717480 41 CCTACCCCTAGCAAGATTCCGGTACGCTCTCAGAAACGCAC CCTACCCCTAGCAAGATTCTGGTACGCTCTCAGAAACGCAC < 41bp 0.556996510505899 0.757786247267702 NA NA prediction 0.401579473523607 Functional Gain - TROAP ENSG00000135451 CDS Human antisense chr12:49717460 chr12:49717459 nonsynonymous SNV 0.955 4 20 hm7G_associated_SNPs_38029 0 0 1 0 1 LOC101927267 chr12:49717387 3'AG 49717387 Downstream 73bp 34998 chr4 75314921 75314921 1 + C T UCEC 75314922 + 75314902 75314942 41 TTCAAAATTTCTGCATTCACGGAGAATGCAAATATATAGAG TTCAAAATTTCTGCATTCATGGAGAATGCAAATATATAGAG < 41bp 0.520186799598104 0.720976281986708 NA NA prediction 0.401578964777208 Functional Gain - AREG ENSG00000109321 CDS Human protein_coding chr4:75314922 chr4:75314921 synonymous SNV . 0 20 hm7G_associated_SNPs_38030 0 0 0 0 1 AREG chr4:75314965 5'GT 75314965 Upstream 45bp 34999 chr7 151791331 151791331 1 + C T SKCM 151791332 + 151791312 151791352 41 AATGGGAAGTGTCACAGTTCGGTATTTCTGTTATGGGTGCC AATGGGAAGTGTCACAGTTTGGTATTTCTGTTATGGGTGCC < 41bp 0.544202474487611 0.74499065671467 NA NA prediction 0.401576364454117 Functional Gain - GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151791332 chr7:151791331 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38032 0 0 1 0 1 GALNT11 chr7:151791275 3'AG 151791275 Downstream 57bp 35000 chr19 49079306 49079306 1 + C T UCEC 49079307 + 49079287 49079327 41 ACACCCAAGATGTGCGGGACGACGACATCTTTATCATCACC ACACCCAAGATGTGCGGGATGACGACATCTTTATCATCACC < 41bp 0.532082761569955 0.732870548004333 NA NA prediction 0.401575572868756 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49079307 chr19:49079306 synonymous SNV . 0 20 hm7G_associated_SNPs_38034 0 0 0 0 1 SULT2B1 chr19:49079340 5'GT 49079340 Upstream 35bp 35001 chr8 95884164 95884164 1 + C T UCS 95884165 + 95884145 95884185 41 CACAGTGAAAGAGCTAGTTCGATATACACTCAGTATAAATC CACAGTGAAAGAGCTAGTTTGATATACACTCAGTATAAATC < 41bp 0.495720088460561 0.700787497304143 NA NA prediction 0.401574994608286 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95884165 chr8:95884164 stopgain 0.994 1 20 hm7G_associated_SNPs_38035 0 0 1 0 2 INTS8 chr8:95884112 3'AG 95884112 Downstream 53bp 35002 chr8 95884164 95884164 1 + C T UCS 95884165 + 95884145 95884185 41 CACAGTGAAAGAGCTAGTTCGATATACACTCAGTATAAATC CACAGTGAAAGAGCTAGTTTGATATACACTCAGTATAAATC < 41bp 0.495720088460561 0.700787497304143 NA NA prediction 0.401574994608286 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95884165 chr8:95884164 stopgain 0.994 1 20 hm7G_associated_SNPs_38035 0 0 1 0 2 INTS8 chr8:95884230 5'GT 95884230 Upstream 67bp 35003 chr16 70512349 70512349 1 + G A rs17886060 70512350 + 70512330 70512370 41 GGCAAGACCCGCCTGGCTCGGAACCTGCTGCAGGTGAGCTC GGCAAGACCCGCCTGGCTCAGAACCTGCTGCAGGTGAGCTC < 41bp 0.492835498348357 0.700787159688654 NA NA prediction 0.401574319377307 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70512350 chr16:70512349 nonsynonymous SNV 0.996 5 20 hm7G_associated_SNPs_38036 0 0 1 0 1 FUK chr16:70512362 5'GT 70512362 Upstream 14bp 35004 chr7 128451904 128451904 1 + C T UCEC 128451905 + 128451885 128451925 41 CCCTGCAGGTGATGTATGACGCCGGTCAGGCGAAGCAGGAG CCCTGCAGGTGATGTATGATGCCGGTCAGGCGAAGCAGGAG < 41bp 0.520160167401128 0.720945968070344 NA NA prediction 0.401571601338432 Functional Gain - CCDC136 ENSG00000128596 CDS Human protein_coding chr7:128451905 chr7:128451904 synonymous SNV . 0 20 hm7G_associated_SNPs_38037 0 0 0 0 1 CCDC136 chr7:128451854 3'AG 128451854 Downstream 51bp 35005 chr8 144643937 144643937 1 + C T UCEC 144643938 + 144643918 144643958 41 AGCGTTCCACGAGCGAAGGCGCCTGGCCACAGCTGCCCTCT AGCGTTCCACGAGCGAAGGTGCCTGGCCACAGCTGCCCTCT < 41bp 0.500014677827927 0.700799234379331 NA NA prediction 0.401569113102808 Functional Gain - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144643938 chr8:144643937 synonymous SNV . 0 20 hm7G_associated_SNPs_38039 0 0 0 0 2 GSDMD chr8:144643912 3'AG 144643912 Downstream 26bp 35006 chr8 144643937 144643937 1 + C T UCEC 144643938 + 144643918 144643958 41 AGCGTTCCACGAGCGAAGGCGCCTGGCCACAGCTGCCCTCT AGCGTTCCACGAGCGAAGGTGCCTGGCCACAGCTGCCCTCT < 41bp 0.500014677827927 0.700799234379331 NA NA prediction 0.401569113102808 Functional Gain - GSDMD ENSG00000104518 CDS Human protein_coding chr8:144643938 chr8:144643937 synonymous SNV . 0 20 hm7G_associated_SNPs_38039 0 0 0 0 2 GSDMD chr8:144643998 5'GT 144643998 Upstream 62bp 35007 chr4 111474494 111474494 1 + C T GBM 111474495 + 111474475 111474515 41 TTGGATTTGCTCAAGGACACGAACCTTATTAAAACTCAGGA TTGGATTTGCTCAAGGACATGAACCTTATTAAAACTCAGGA < 41bp 0.504201401867114 0.704985478644611 NA NA prediction 0.401568153554994 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111474495 chr4:111474494 nonsynonymous SNV 0.777 2 20 hm7G_associated_SNPs_38040 0 0 0 0 1 ENPEP chr4:111474471 3'AG 111474471 Downstream 24bp 35008 chr5 129037269 129037269 1 + C T UCEC 129037270 + 129037250 129037290 41 TGCATGACCGTGTGGGAGGCGGGAGTGTGGTCTGAGGTGCA TGCATGACCGTGTGGGAGGTGGGAGTGTGGTCTGAGGTGCA < 41bp 0.528043531958084 0.728825847775222 NA NA prediction 0.401564631634277 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:129037270 chr5:129037269 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_38043 0 0 0 0 1 ADAMTS19 chr5:129037285 5'GT 129037285 Upstream 17bp 35009 chr1 202275996 202275996 1 + C T rs563721511 202275997 + 202275977 202276017 41 GCCTCTCTTGCTGCCCTAGCGGCCTCCAACACAACCGCATC GCCTCTCTTGCTGCCCTAGTGGCCTCCAACACAACCGCATC < 41bp 0.491024227749663 0.700781508628964 NA NA prediction 0.401563017257927 Functional Gain - LGR6 ENSG00000133067 CDS Human protein_coding chr1:202275997 chr1:202275996 synonymous SNV . 0 20 hm7G_associated_SNPs_38044 0 0 0 0 1 LGR6 chr1:202275996 3'AG 202275996 Downstream 1bp 35010 chr20 31608348 31608348 1 + G A SKCM 31608349 + 31608329 31608369 41 TCTCCTGCTTCTCTTTCAGGGATGTCCAGCTCACGGTGGCC TCTCCTGCTTCTCTTTCAGAGATGTCCAGCTCACGGTGGCC < 41bp 0.543204214765862 0.743982648920377 NA NA prediction 0.40155686830903 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31608349 chr20:31608348 synonymous SNV . 0 20 hm7G_associated_SNPs_38046 0 0 1 0 2 BPIFB2 chr20:31608348 3'AG 31608348 Downstream 1bp 35011 chr20 31608348 31608348 1 + G A SKCM 31608349 + 31608329 31608369 41 TCTCCTGCTTCTCTTTCAGGGATGTCCAGCTCACGGTGGCC TCTCCTGCTTCTCTTTCAGAGATGTCCAGCTCACGGTGGCC < 41bp 0.543204214765862 0.743982648920377 NA NA prediction 0.40155686830903 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31608349 chr20:31608348 synonymous SNV . 0 20 hm7G_associated_SNPs_38046 0 0 1 0 2 BPIFB2 chr20:31608393 5'GT 31608393 Upstream 46bp 35012 chr7 143016896 143016896 1 + G A LIHC 143016897 + 143016877 143016917 41 AGACAGGGAGCAGGACATAGGGATGCCCAAGAAGACAGGCT AGACAGGGAGCAGGACATAAGGATGCCCAAGAAGACAGGCT < 41bp 0.560327997593849 0.761106232374618 NA NA prediction 0.401556469561538 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143016897 chr7:143016896 nonsynonymous SNV 0.418 1 20 hm7G_associated_SNPs_38047 0 0 0 0 2 CLCN1 chr7:143016848 3'AG 143016848 Downstream 49bp 35013 chr7 143016896 143016896 1 + G A LIHC 143016897 + 143016877 143016917 41 AGACAGGGAGCAGGACATAGGGATGCCCAAGAAGACAGGCT AGACAGGGAGCAGGACATAAGGATGCCCAAGAAGACAGGCT < 41bp 0.560327997593849 0.761106232374618 NA NA prediction 0.401556469561538 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143016897 chr7:143016896 nonsynonymous SNV 0.418 1 20 hm7G_associated_SNPs_38047 0 0 0 0 2 CLCN1 chr7:143016968 5'GT 143016968 Upstream 73bp 35014 chr11 118984666 118984666 1 + C T UCEC 118984667 + 118984647 118984687 41 CAAGAAGACACCCACCAAGCGCAGCACTCTCATCATCTCTG CAAGAAGACACCCACCAAGTGCAGCACTCTCATCATCTCTG < 41bp 0.538928422736693 0.739706226088949 NA NA prediction 0.401555606704513 Functional Gain - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118984667 chr11:118984666 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38048 0 0 0 0 1 C2CD2L chr11:118984698 5'GT 118984698 Upstream 33bp 35015 chr14 100118610 100118610 1 + C T GBM 100118611 + 100118591 100118631 41 GACGCCGAGGACCCATTCACGCCCCTGCGCACGGTGCCCGG GACGCCGAGGACCCATTCATGCCCCTGCGCACGGTGCCCGG < 41bp 0.524578227191199 0.725355914531366 NA NA prediction 0.401555374680335 Functional Gain - HHIPL1 ENSG00000182218 CDS Human protein_coding chr14:100118611 chr14:100118610 nonsynonymous SNV 0.025 4 20 hm7G_associated_SNPs_38050 0 0 0 0 1 HHIPL1 chr14:100118561 3'AG 100118561 Downstream 50bp 35016 chr1 43909345 43909345 1 + G T THCA 43909346 + 43909326 43909366 41 CCTTGGATGTGTCGCCCCCGGGAGCCCGTGAGGAGCCTTGG CCTTGGATGTGTCGCCCCCTGGAGCCCGTGAGGAGCCTTGG < 41bp 0.371373896678912 0.700773880071354 NA NA prediction 0.401547760142708 Functional Gain - SZT2 ENSG00000198198 CDS Human protein_coding chr1:43909346 chr1:43909345 synonymous SNV . 0 20 hm7G_associated_SNPs_38051 0 0 1 0 1 SZT2 chr1:43909268 3'AG 43909268 Downstream 78bp 35017 chr10 121652374 121652374 1 + C T CESC 121652375 + 121652355 121652395 41 AACTTACTTTTCTCCTCCTCGGCCACGGAGTTCAGCTTCAA AACTTACTTTTCTCCTCCTTGGCCACGGAGTTCAGCTTCAA < 41bp 0.502794835769957 0.70356761195731 NA NA prediction 0.401545552374705 Functional Gain - SEC23IP ENSG00000107651 CDS Human protein_coding chr10:121652375 chr10:121652374 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38053 0 0 1 0 1 SEC23IP chr10:121652457 5'GT 121652457 Upstream 84bp 35018 chr22 32754420 32754420 1 + G T SARC 32754421 + 32754401 32754441 41 CAGATGAACCCAAGGATGCGGAAGTTCCAAGGTAAGGAATC CAGATGAACCCAAGGATGCTGAAGTTCCAAGGTAAGGAATC < 41bp 0.374809356773049 0.700772700026804 NA NA prediction 0.401545400053607 Functional Gain - RFPL3 ENSG00000128276 CDS Human protein_coding chr22:32754421 chr22:32754420 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_38054 0 0 0 0 1 RFPL3 chr22:32754431 5'GT 32754431 Upstream 12bp 35019 chr20 24565605 24565605 1 + C T SKCM 24565606 + 24565586 24565626 41 GCTTCTGGCCTCTGGGCATCGCAGCCTTCTACTTGTCCCAT GCTTCTGGCCTCTGGGCATTGCAGCCTTCTACTTGTCCCAT < 41bp 0.539601952859987 0.740374002551559 NA NA prediction 0.401544099383145 Functional Gain - SYNDIG1 ENSG00000101463 CDS Human protein_coding chr20:24565606 chr20:24565605 synonymous SNV . 0 20 hm7G_associated_SNPs_38055 0 0 0 0 1 SYNDIG1 chr20:24565629 5'GT 24565629 Upstream 25bp 35020 chr3 8609216 8609216 1 + G A STAD 8609217 + 8609197 8609237 41 TTGTGAGCAGCTGCTGAGCGGCCGGGCGTACATCGTCACCA TTGTGAGCAGCTGCTGAGCAGCCGGGCGTACATCGTCACCA < 41bp 0.483350948646095 0.700770950588165 NA NA prediction 0.401541901176331 Functional Gain - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8609217 chr3:8609216 nonsynonymous SNV 0.930 5 20 hm7G_associated_SNPs_38056 0 0 1 0 1 LMCD1 chr3:8609126 3'AG 8609126 Downstream 91bp 35021 chr13 103484012 103484012 1 + C T COAD 103484013 + 103483993 103484033 41 ATTTTTGTCCAATTGGCTTCGAAGCAACCCCTGTTAAAGCT ATTTTTGTCCAATTGGCTTTGAAGCAACCCCTGTTAAAGCT < 41bp 0.553304616235845 0.754074843040952 NA NA prediction 0.401540453610214 Functional Gain - BIVM;BIVM-ERCC5 ENSG00000134897;ENSG00000270181 CDS Human other chr13:103484013 chr13:103484012 synonymous SNV . 0 20 hm7G_associated_SNPs_38057 0 0 1 0 2 BIVM;BIVM-ERCC5 chr13:103483915 3'AG 103483915 Downstream 98bp 35022 chr13 103484012 103484012 1 + C T COAD 103484013 + 103483993 103484033 41 ATTTTTGTCCAATTGGCTTCGAAGCAACCCCTGTTAAAGCT ATTTTTGTCCAATTGGCTTTGAAGCAACCCCTGTTAAAGCT < 41bp 0.553304616235845 0.754074843040952 NA NA prediction 0.401540453610214 Functional Gain - BIVM;BIVM-ERCC5 ENSG00000134897;ENSG00000270181 CDS Human other chr13:103484013 chr13:103484012 synonymous SNV . 0 20 hm7G_associated_SNPs_38057 0 0 1 0 2 BIVM;BIVM-ERCC5 chr13:103484047 5'GT 103484047 Upstream 36bp 35023 chr17 61766199 61766199 1 + C T SKCM 61766200 + 61766180 61766220 41 CAAAGGTGGAACCTACCCCCGGCGCTACCACGTGTCTGTGC CAAAGGTGGAACCTACCCCTGGCGCTACCACGTGTCTGTGC < 41bp 0.483470530696375 0.700767964354177 NA NA prediction 0.401535928708354 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61766200 chr17:61766199 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_38059 0 0 1 0 2 MAP3K3 chr17:61766149 3'AG 61766149 Downstream 51bp 35024 chr17 61766199 61766199 1 + C T SKCM 61766200 + 61766180 61766220 41 CAAAGGTGGAACCTACCCCCGGCGCTACCACGTGTCTGTGC CAAAGGTGGAACCTACCCCTGGCGCTACCACGTGTCTGTGC < 41bp 0.483470530696375 0.700767964354177 NA NA prediction 0.401535928708354 Functional Gain - MAP3K3 ENSG00000198909 CDS Human protein_coding chr17:61766200 chr17:61766199 nonsynonymous SNV 0.991 4 20 hm7G_associated_SNPs_38059 0 0 1 0 2 MAP3K3 chr17:61766241 5'GT 61766241 Upstream 43bp 35025 chr11 70189920 70189920 1 + C T SKCM 70189921 + 70189901 70189941 41 AGCTCAGTTGACCTGCTATCGCCCAGCGGGCAGGCCGACGC AGCTCAGTTGACCTGCTATTGCCCAGCGGGCAGGCCGACGC < 41bp 0.491496708172723 0.700764276187853 NA NA prediction 0.401528552375707 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70189921 chr11:70189920 nonsynonymous SNV 0.047 3 20 hm7G_associated_SNPs_38061 0 0 1 0 1 PPFIA1 chr11:70189998 5'GT 70189998 Upstream 79bp 35026 chr1 158059327 158059327 1 + G A rs201805473 158059328 + 158059308 158059348 41 ACCAGCTGCTGCTGAAGTCGGTGACTCAGGCAGACGCTGGC ACCAGCTGCTGCTGAAGTCAGTGACTCAGGCAGACGCTGGC < 41bp 0.557226997954616 0.75799079754391 NA NA prediction 0.401527599178586 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158059328 chr1:158059327 synonymous SNV . 0 20 hm7G_associated_SNPs_38062 0 0 1 0 3 KIRREL chr1:158059244 3'AG 158059244 Downstream 84bp 35027 chr1 158059327 158059327 1 + G A rs201805473 158059328 + 158059308 158059348 41 ACCAGCTGCTGCTGAAGTCGGTGACTCAGGCAGACGCTGGC ACCAGCTGCTGCTGAAGTCAGTGACTCAGGCAGACGCTGGC < 41bp 0.557226997954616 0.75799079754391 NA NA prediction 0.401527599178586 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158059328 chr1:158059327 synonymous SNV . 0 20 hm7G_associated_SNPs_38062 0 0 1 0 3 KIRREL chr1:158059292 3'AG 158059292 Downstream 36bp 35028 chr1 158059327 158059327 1 + G A rs201805473 158059328 + 158059308 158059348 41 ACCAGCTGCTGCTGAAGTCGGTGACTCAGGCAGACGCTGGC ACCAGCTGCTGCTGAAGTCAGTGACTCAGGCAGACGCTGGC < 41bp 0.557226997954616 0.75799079754391 NA NA prediction 0.401527599178586 Functional Gain - KIRREL ENSG00000183853 CDS Human protein_coding chr1:158059328 chr1:158059327 synonymous SNV . 0 20 hm7G_associated_SNPs_38062 0 0 1 0 3 KIRREL chr1:158059418 5'GT 158059418 Upstream 92bp 35029 chr14 60749488 60749488 1 + C T UCEC 60749489 + 60749469 60749509 41 GGGGCAGGGTAATGGGTTGCGATATGGGCTAAGCAGCATGC GGGGCAGGGTAATGGGTTGTGATATGGGCTAAGCAGCATGC < 41bp 0.522845929963197 0.723609186750486 NA NA prediction 0.401526513574577 Functional Gain - PPM1A ENSG00000100614 CDS Human protein_coding chr14:60749489 chr14:60749488 stopgain 0.999 1 20 hm7G_associated_SNPs_38063 0 0 1 0 1 PPM1A chr14:60749402 3'AG 60749402 Downstream 87bp 35030 chr15 101464933 101464933 1 + C T STAD 101464934 + 101464914 101464954 41 GTGCCATGGAGACGCTTAACGGTAAGGACAGGGCTGTGCTT GTGCCATGGAGACGCTTAATGGTAAGGACAGGGCTGTGCTT < 41bp 0.530769567470203 0.731527782526954 NA NA prediction 0.401516430113501 Functional Gain - LRRK1 ENSG00000154237 CDS Human protein_coding chr15:101464934 chr15:101464933 synonymous SNV . 0 20 hm7G_associated_SNPs_38065 0 0 0 0 1 LRRK1 chr15:101464934 5'GT 101464934 Upstream 2bp 35031 chr11 113210096 113210096 1 + C T rs35609733 113210097 + 113210077 113210117 41 ATTCAGGAAAGAACACAGCCGTGACCACCAAGAACCTCCTG ATTCAGGAAAGAACACAGCTGTGACCACCAAGAACCTCCTG < 41bp 0.524441224972599 0.725195168158587 NA NA prediction 0.401507886371976 Functional Gain - TTC12 ENSG00000149292 CDS Human protein_coding chr11:113210097 chr11:113210096 synonymous SNV . 0 20 hm7G_associated_SNPs_38068 0 0 0 0 1 TTC12 chr11:113210008 3'AG 113210008 Downstream 89bp 35032 chr3 38350471 38350471 1 + C T rs146067679 38350472 + 38350452 38350492 41 GTGGTTAGTGGGTGAGCACCGGGCCCATGCCATTATCCTGG GTGGTTAGTGGGTGAGCACTGGGCCCATGCCATTATCCTGG < 41bp 0.532857366063967 0.733611152974773 NA NA prediction 0.401507573821612 Functional Gain - SLC22A14 ENSG00000144671 CDS Human protein_coding chr3:38350472 chr3:38350471 nonsynonymous SNV 0.663 5 20 hm7G_associated_SNPs_38069 0 0 0 0 1 SLC22A14 chr3:38350445 3'AG 38350445 Downstream 27bp 35033 chr22 25297862 25297862 1 + C T CESC 25297863 + 25297843 25297883 41 AGAAGGATGTGCAGAGGTGCGACCGCAACTACTGGTACTTC AGAAGGATGTGCAGAGGTGTGACCGCAACTACTGGTACTTC < 41bp 0.539742113122224 0.740494940458178 NA NA prediction 0.401505654671908 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25297863 chr22:25297862 synonymous SNV . 0 20 hm7G_associated_SNPs_38070 0 0 0 0 2 SGSM1 chr22:25297800 3'AG 25297800 Downstream 63bp 35034 chr22 25297862 25297862 1 + C T CESC 25297863 + 25297843 25297883 41 AGAAGGATGTGCAGAGGTGCGACCGCAACTACTGGTACTTC AGAAGGATGTGCAGAGGTGTGACCGCAACTACTGGTACTTC < 41bp 0.539742113122224 0.740494940458178 NA NA prediction 0.401505654671908 Functional Gain - SGSM1 ENSG00000167037 CDS Human protein_coding chr22:25297863 chr22:25297862 synonymous SNV . 0 20 hm7G_associated_SNPs_38070 0 0 0 0 2 SGSM1 chr22:25297924 5'GT 25297924 Upstream 63bp 35035 chr1 13743086 13743086 1 + G A SKCM 13743087 + 13743067 13743107 41 GATGCACTGCTTACCCACAGGGTTCGTCTCAGGTGAGGTGG GATGCACTGCTTACCCACAAGGTTCGTCTCAGGTGAGGTGG < 41bp 0.47708990106574 0.700751028275422 NA NA prediction 0.401502056550844 Functional Gain - PRAMEF20 ENSG00000204478 CDS Human protein_coding chr1:13743087 chr1:13743086 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_38072 0 0 0 0 1 PRAMEF20 chr1:13743098 5'GT 13743098 Upstream 13bp 35036 chr10 75673067 75673067 1 + C T GBM 75673068 + 75673048 75673088 41 GAACCCAGACAACCGGAGGCGACCCTGGTGCTATGTGCAGG GAACCCAGACAACCGGAGGTGACCCTGGTGCTATGTGCAGG < 41bp 0.547663507205576 0.74841349077525 NA NA prediction 0.40149996713935 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673068 chr10:75673067 stopgain 0.028 0 20 hm7G_associated_SNPs_38075 0 0 0 0 2 PLAU chr10:75673048 3'AG 75673048 Downstream 20bp 35037 chr10 75673067 75673067 1 + C T GBM 75673068 + 75673048 75673088 41 GAACCCAGACAACCGGAGGCGACCCTGGTGCTATGTGCAGG GAACCCAGACAACCGGAGGTGACCCTGGTGCTATGTGCAGG < 41bp 0.547663507205576 0.74841349077525 NA NA prediction 0.40149996713935 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673068 chr10:75673067 stopgain 0.028 0 20 hm7G_associated_SNPs_38075 0 0 0 0 2 PLAU chr10:75673139 5'GT 75673139 Upstream 73bp 35038 chr17 78972195 78972195 1 + C T SKCM 78972196 + 78972176 78972216 41 AGCTGCCAGAGGTTCCCTCCGAGCCCCTTCCTGAGAAGATC AGCTGCCAGAGGTTCCCTCTGAGCCCCTTCCTGAGAAGATC < 41bp 0.523714010870704 0.724463198457078 NA NA prediction 0.401498375172748 Functional Gain - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78972196 chr17:78972195 synonymous SNV . 0 20 hm7G_associated_SNPs_38076 0 0 1 0 2 CHMP6 chr17:78972166 3'AG 78972166 Downstream 30bp 35039 chr17 78972195 78972195 1 + C T SKCM 78972196 + 78972176 78972216 41 AGCTGCCAGAGGTTCCCTCCGAGCCCCTTCCTGAGAAGATC AGCTGCCAGAGGTTCCCTCTGAGCCCCTTCCTGAGAAGATC < 41bp 0.523714010870704 0.724463198457078 NA NA prediction 0.401498375172748 Functional Gain - CHMP6 ENSG00000176108 CDS Human protein_coding chr17:78972196 chr17:78972195 synonymous SNV . 0 20 hm7G_associated_SNPs_38076 0 0 1 0 2 CHMP6 chr17:78972220 5'GT 78972220 Upstream 26bp 35040 chr17 26851529 26851529 1 + C T GBM 26851530 + 26851510 26851550 41 TGTCTACCCAGAAGCATGCCGGCTTCAGCTGCTCGTCATTT TGTCTACCCAGAAGCATGCTGGCTTCAGCTGCTCGTCATTT < 41bp 0.516196866755735 0.716944860458738 NA NA prediction 0.401495987406006 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26851530 chr17:26851529 synonymous SNV . 0 20 hm7G_associated_SNPs_38077 0 0 0 0 1 FOXN1 chr17:26851521 3'AG 26851521 Downstream 9bp 35041 chr12 7302206 7302206 1 + G A GBM 7302207 + 7302187 7302227 41 GATGACCTGGATCCCGAGCGGGAAAGCCTGCTCCTGGACAC GATGACCTGGATCCCGAGCAGGAAAGCCTGCTCCTGGACAC < 41bp 0.554049397190638 0.754796240058626 NA NA prediction 0.401493685735978 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7302207 chr12:7302206 nonsynonymous SNV 0.942 2 20 hm7G_associated_SNPs_38080 0 0 1 0 2 CLSTN3 chr12:7302119 3'AG 7302119 Downstream 88bp 35042 chr12 7302206 7302206 1 + G A GBM 7302207 + 7302187 7302227 41 GATGACCTGGATCCCGAGCGGGAAAGCCTGCTCCTGGACAC GATGACCTGGATCCCGAGCAGGAAAGCCTGCTCCTGGACAC < 41bp 0.554049397190638 0.754796240058626 NA NA prediction 0.401493685735978 Functional Gain - CLSTN3 ENSG00000139182 CDS Human protein_coding chr12:7302207 chr12:7302206 nonsynonymous SNV 0.942 2 20 hm7G_associated_SNPs_38080 0 0 1 0 2 CLSTN3 chr12:7302289 5'GT 7302289 Upstream 84bp 35043 chr1 17594456 17594456 1 + C T LUSC 17594457 + 17594437 17594477 41 CACAGGTCTTCCACATCTGCGGTGAGTTTGTGCCACTGCCC CACAGGTCTTCCACATCTGTGGTGAGTTTGTGCCACTGCCC < 41bp 0.493765503058971 0.700744934504258 NA NA prediction 0.401489869008515 Functional Gain - PADI3 ENSG00000142619 CDS Human protein_coding chr1:17594457 chr1:17594456 synonymous SNV . 0 20 hm7G_associated_SNPs_38081 0 0 0 0 1 PADI3 chr1:17594457 5'GT 17594457 Upstream 2bp 35044 chr19 56539799 56539799 1 + C T BLCA 56539800 + 56539780 56539820 41 CCAGCACTGTCCGTATTTGCGGAAAATTCGGGTGGATGTCA CCAGCACTGTCCGTATTTGTGGAAAATTCGGGTGGATGTCA < 41bp 0.492835904746658 0.700744069486608 NA NA prediction 0.401488138973215 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56539800 chr19:56539799 nonsynonymous SNV 0.003 2 20 hm7G_associated_SNPs_38083 0 0 0 0 1 NLRP5 chr19:56539875 5'GT 56539875 Upstream 77bp 35045 chr8 95863888 95863888 1 + C T UCEC 95863889 + 95863869 95863909 41 ACATGGTATGACTTCAGAGCGCCAGTTCTGGACAGTGTCTA ACATGGTATGACTTCAGAGTGCCAGTTCTGGACAGTGTCTA < 41bp 0.522689372062882 0.723433396794352 NA NA prediction 0.401488049462942 Functional Gain - INTS8 ENSG00000164941 CDS Human protein_coding chr8:95863889 chr8:95863888 nonsynonymous SNV 0.981 3 20 hm7G_associated_SNPs_38084 0 0 1 1 1 INTS8 chr8:95863914 5'GT 95863914 Upstream 27bp 35046 chr5 156816349 156816349 1 + C T UCEC 156816350 + 156816330 156816370 41 CCAATGGCGTCATGCACGTCGATGAGTGTGTGGAGTTCCAC CCAATGGCGTCATGCACGTTGATGAGTGTGTGGAGTTCCAC < 41bp 0.558322585355652 0.759065967247567 NA NA prediction 0.401486763783831 Functional Gain - CYFIP2 ENSG00000055163 CDS Human protein_coding chr5:156816350 chr5:156816349 synonymous SNV . 0 20 hm7G_associated_SNPs_38085 0 0 0 0 1 CYFIP2 chr5:156816435 5'GT 156816435 Upstream 87bp 35047 chr16 56918055 56918055 1 + G A UCEC 56918056 + 56918036 56918076 41 TCCTCCTCACCTGGTGGGCGGCCCTCATCGCCATTGGCGTG TCCTCCTCACCTGGTGGGCAGCCCTCATCGCCATTGGCGTG < 41bp 0.555752084848814 0.756494826721315 NA NA prediction 0.401485483745003 Functional Gain - SLC12A3 ENSG00000070915 CDS Human protein_coding chr16:56918056 chr16:56918055 synonymous SNV . 0 20 hm7G_associated_SNPs_38086 0 0 0 0 1 SLC12A3 chr16:56918116 5'GT 56918116 Upstream 62bp 35048 chr16 845754 845754 1 + C T rs191366820 845755 + 845735 845775 41 CGGCATCGCGCCAGCCACGCGCAGCCGGGCCACGCCCCAGG CGGCATCGCGCCAGCCACGTGCAGCCGGGCCACGCCCCAGG < 41bp 0.53908583983119 0.739827063262206 NA NA prediction 0.401482446862032 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845755 chr16:845754 nonsynonymous SNV 0.027 4 20 hm7G_associated_SNPs_38088 0 0 1 0 2 CHTF18 chr16:845685 3'AG 845685 Downstream 70bp 35049 chr16 845754 845754 1 + C T rs191366820 845755 + 845735 845775 41 CGGCATCGCGCCAGCCACGCGCAGCCGGGCCACGCCCCAGG CGGCATCGCGCCAGCCACGTGCAGCCGGGCCACGCCCCAGG < 41bp 0.53908583983119 0.739827063262206 NA NA prediction 0.401482446862032 Functional Gain - CHTF18 ENSG00000127586 CDS Human protein_coding chr16:845755 chr16:845754 nonsynonymous SNV 0.027 4 20 hm7G_associated_SNPs_38088 0 0 1 0 2 CHTF18 chr16:845834 5'GT 845834 Upstream 81bp 35050 chr6 32713018 32713018 1 + C T rs17213281 32713019 + 32712999 32713039 41 CCCATGAATTTGATGGAGACGAGGAGTTCTATGTGGACCTG CCCATGAATTTGATGGAGATGAGGAGTTCTATGTGGACCTG < 41bp 0.545802392176997 0.746543554610371 NA NA prediction 0.401482324866747 Functional Gain - HLA-DQA2 ENSG00000237541 CDS Human protein_coding chr6:32713019 chr6:32713018 synonymous SNV . 0 20 hm7G_associated_SNPs_38089 0 0 0 0 1 HLA-DQA2 chr6:32712936 3'AG 32712936 Downstream 83bp 35051 chr3 141278805 141278805 1 + C T UCEC 141278806 + 141278786 141278826 41 AGATTAAGGTTCCTGTGAACGTATTAAGAACTGATTCCTCT AGATTAAGGTTCCTGTGAATGTATTAAGAACTGATTCCTCT < 41bp 0.495962425460611 0.700738799215205 NA NA prediction 0.401477598430411 Functional Gain - RASA2 ENSG00000155903 CDS Human protein_coding chr3:141278806 chr3:141278805 synonymous SNV . 0 20 hm7G_associated_SNPs_38091 0 0 1 0 2 RASA2 chr3:141278736 3'AG 141278736 Downstream 70bp 35052 chr3 141278805 141278805 1 + C T UCEC 141278806 + 141278786 141278826 41 AGATTAAGGTTCCTGTGAACGTATTAAGAACTGATTCCTCT AGATTAAGGTTCCTGTGAATGTATTAAGAACTGATTCCTCT < 41bp 0.495962425460611 0.700738799215205 NA NA prediction 0.401477598430411 Functional Gain - RASA2 ENSG00000155903 CDS Human protein_coding chr3:141278806 chr3:141278805 synonymous SNV . 0 20 hm7G_associated_SNPs_38091 0 0 1 0 2 RASA2 chr3:141278837 5'GT 141278837 Upstream 33bp 35053 chr10 133959058 133959058 1 + C T UCEC 133959059 + 133959039 133959079 41 AGAGAAGCAGGCACTGTACCGGAGAAATCAAGAGCTTGTGG AGAGAAGCAGGCACTGTACTGGAGAAATCAAGAGCTTGTGG < 41bp 0.548384842027368 0.749123596391651 NA NA prediction 0.401477508728565 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133959059 chr10:133959058 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_38092 0 0 0 0 2 JAKMIP3 chr10:133959022 3'AG 133959022 Downstream 37bp 35054 chr10 133959058 133959058 1 + C T UCEC 133959059 + 133959039 133959079 41 AGAGAAGCAGGCACTGTACCGGAGAAATCAAGAGCTTGTGG AGAGAAGCAGGCACTGTACTGGAGAAATCAAGAGCTTGTGG < 41bp 0.548384842027368 0.749123596391651 NA NA prediction 0.401477508728565 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133959059 chr10:133959058 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_38092 0 0 0 0 2 JAKMIP3 chr10:133959084 5'GT 133959084 Upstream 27bp 35055 chr7 137773395 137773395 1 + G A SKCM 137773396 + 137773376 137773416 41 GAAGGTTGCTATTGACACAGGGTACCGACATATTGATGGGG GAAGGTTGCTATTGACACAAGGTACCGACATATTGATGGGG < 41bp 0.541952656526396 0.742691196855981 NA NA prediction 0.401477080659169 Functional Gain - AKR1D1 ENSG00000122787 CDS Human protein_coding chr7:137773396 chr7:137773395 nonsynonymous SNV 0.517 5 20 hm7G_associated_SNPs_38093 0 0 1 2 1 AKR1D1 chr7:137773347 3'AG 137773347 Downstream 49bp 35056 chr8 22862049 22862049 1 + C T UCEC 22862050 + 22862030 22862070 41 CCAGGCTCATCTGTGCCCGCGCTTGCAATGCCACCCTCACC CCAGGCTCATCTGTGCCCGTGCTTGCAATGCCACCCTCACC < 41bp 0.487838934337682 0.700738248158031 NA NA prediction 0.401476496316062 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22862050 chr8:22862049 synonymous SNV . 0 20 hm7G_associated_SNPs_38094 0 0 0 0 1 RHOBTB2 chr8:22862139 5'GT 22862139 Upstream 91bp 35057 chr16 28911961 28911961 1 + G A LUSC 28911962 + 28911942 28911982 41 CTCCGCGCAAGGAGGTCACGGGCTCCATCCAGCTGTGCCGT CTCCGCGCAAGGAGGTCACAGGCTCCATCCAGCTGTGCCGT < 41bp 0.470847056445323 0.70073781316323 NA NA prediction 0.401475626326461 Functional Gain - ATP2A1 ENSG00000196296 CDS Human protein_coding chr16:28911962 chr16:28911961 synonymous SNV . 0 20 hm7G_associated_SNPs_38095 0 0 1 0 1 ATP2A1 chr16:28911902 3'AG 28911902 Downstream 60bp 35058 chr5 38881727 38881727 1 + G A SKCM 38881728 + 38881708 38881748 41 CCACTGTGAAGTGGAACCAGGTTCTGCATTGGAGCTGGGAA CCACTGTGAAGTGGAACCAAGTTCTGCATTGGAGCTGGGAA < 41bp 0.504192324594273 0.704927382833012 NA NA prediction 0.401470116477479 Functional Gain - OSMR ENSG00000145623 CDS Human protein_coding chr5:38881728 chr5:38881727 synonymous SNV . 0 20 hm7G_associated_SNPs_38098 0 0 1 0 1 OSMR chr5:38881695 3'AG 38881695 Downstream 33bp 35059 chr3 184298565 184298565 1 + C T SKCM 184298566 + 184298546 184298586 41 CCCAGAGGCCATAGCCTATCGGAAGTTCACTTCTGCTAGTG CCCAGAGGCCATAGCCTATTGGAAGTTCACTTCTGCTAGTG < 41bp 0.488818726786656 0.700733807282472 NA NA prediction 0.401467614564944 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184298566 chr3:184298565 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_38100 0 0 0 0 1 EPHB3 chr3:184298517 3'AG 184298517 Downstream 49bp 35060 chr9 107550317 107550317 1 - G A CESC 107550316 - 107550296 107550336 41 GGTTGGTGAGTGGGCGATTCGGAAACTGGGCCTCGTGAAGT GGTTGGTGAGTGGGCGATTTGGAAACTGGGCCTCGTGAAGT < 41bp 0.536706562888448 0.737439666357682 NA NA prediction 0.401466206938469 Functional Gain - ABCA1 ENSG00000165029 CDS Human protein_coding chr9:107550316 chr9:107550317 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38101 0 0 1 0 1 ABCA1 chr9:107550335 3'AG 107550335 Downstream 19bp 35061 chr2 242289575 242289575 1 + G A UCEC 242289576 + 242289556 242289596 41 TGGCGATGGCGGGGCTCTCGGGCACCACGTGTAAGGTGATG TGGCGATGGCGGGGCTCTCAGGCACCACGTGTAAGGTGATG < 41bp 0.544558506326663 0.745290082870805 NA NA prediction 0.401463153088284 Functional Gain - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242289576 chr2:242289575 nonsynonymous SNV 0.132 2 20 hm7G_associated_SNPs_38102 0 0 1 0 2 SEPT2 chr2:242289488 3'AG 242289488 Downstream 88bp 35062 chr2 242289575 242289575 1 + G A UCEC 242289576 + 242289556 242289596 41 TGGCGATGGCGGGGCTCTCGGGCACCACGTGTAAGGTGATG TGGCGATGGCGGGGCTCTCAGGCACCACGTGTAAGGTGATG < 41bp 0.544558506326663 0.745290082870805 NA NA prediction 0.401463153088284 Functional Gain - SEPT2 ENSG00000168385 CDS Human protein_coding chr2:242289576 chr2:242289575 nonsynonymous SNV 0.132 2 20 hm7G_associated_SNPs_38102 0 0 1 0 2 SEPT2 chr2:242289618 5'GT 242289618 Upstream 44bp 35063 chr16 67575651 67575651 1 + C T COAD 67575652 + 67575632 67575672 41 ACCTATAGCCAGAGCCCACCGGACACACCCTCACTTCGGGA ACCTATAGCCAGAGCCCACTGGACACACCCTCACTTCGGGA < 41bp 0.566213372999131 0.766944767628401 NA NA prediction 0.401462789258541 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575652 chr16:67575651 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_38103 0 0 1 0 2 RIPOR1 chr16:67575556 3'AG 67575556 Downstream 96bp 35064 chr16 67575651 67575651 1 + C T COAD 67575652 + 67575632 67575672 41 ACCTATAGCCAGAGCCCACCGGACACACCCTCACTTCGGGA ACCTATAGCCAGAGCCCACTGGACACACCCTCACTTCGGGA < 41bp 0.566213372999131 0.766944767628401 NA NA prediction 0.401462789258541 Functional Gain - RIPOR1 ENSG00000039523 CDS Human protein_coding chr16:67575652 chr16:67575651 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_38103 0 0 1 0 2 RIPOR1 chr16:67575685 5'GT 67575685 Upstream 35bp 35065 chr2 70096886 70096886 1 + C T ACC 70096887 + 70096867 70096907 41 CAGGTTTTAACTTCGGCTTCGACCTACTTGTAACTTACACC CAGGTTTTAACTTCGGCTTTGACCTACTTGTAACTTACACC < 41bp 0.54147030865768 0.742200824186056 NA NA prediction 0.401461031056752 Functional Gain - GMCL1 ENSG00000087338 CDS Human protein_coding chr2:70096887 chr2:70096886 synonymous SNV . 0 20 hm7G_associated_SNPs_38104 0 0 1 0 1 GMCL1 chr2:70096851 3'AG 70096851 Downstream 36bp 35066 chr19 16631705 16631705 1 - G A UCEC 16631704 - 16631684 16631724 41 GTGAAGGCTGGGAGCAGAACGGCCTCTATGAGTTCTTCCGA GTGAAGGCTGGGAGCAGAATGGCCTCTATGAGTTCTTCCGA < 41bp 0.48935644594778 0.700727820203109 NA NA prediction 0.401455640406217 Functional Gain - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631704 chr19:16631705 synonymous SNV . 0 20 hm7G_associated_SNPs_38105 0 0 1 0 2 CHERP chr19:16631637 5'GT 16631637 Upstream 69bp 35067 chr19 16631705 16631705 1 - G A UCEC 16631704 - 16631684 16631724 41 GTGAAGGCTGGGAGCAGAACGGCCTCTATGAGTTCTTCCGA GTGAAGGCTGGGAGCAGAATGGCCTCTATGAGTTCTTCCGA < 41bp 0.48935644594778 0.700727820203109 NA NA prediction 0.401455640406217 Functional Gain - CHERP ENSG00000085872 CDS Human protein_coding chr19:16631704 chr19:16631705 synonymous SNV . 0 20 hm7G_associated_SNPs_38105 0 0 1 0 2 CHERP chr19:16631723 3'AG 16631723 Downstream 19bp 35068 chr15 45433155 45433155 1 + G A PRAD 45433156 + 45433136 45433176 41 GGCTAGAGCTGCTCCCTGGGGGACTCCTGGAGAGCCACCGG GGCTAGAGCTGCTCCCTGGAGGACTCCTGGAGAGCCACCGG < 41bp 0.47454781958056 0.700727332861062 NA NA prediction 0.401454665722123 Functional Gain - DUOX1 ENSG00000137857 CDS Human protein_coding chr15:45433156 chr15:45433155 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_38106 0 0 0 0 1 DUOX1 chr15:45433093 3'AG 45433093 Downstream 63bp 35069 chr7 33028145 33028145 1 + C T UCEC 33028146 + 33028126 33028166 41 CGGAACCGCACGTTTGACACGTACATTGGGCAGGGCTACGT CGGAACCGCACGTTTGACATGTACATTGGGCAGGGCTACGT < 41bp 0.527584296713656 0.728308831539191 NA NA prediction 0.401449069651071 Functional Gain - FKBP9 ENSG00000122642 CDS Human protein_coding chr7:33028146 chr7:33028145 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38108 0 0 1 0 1 FKBP9 chr7:33028119 3'AG 33028119 Downstream 27bp 35070 chr12 9070341 9070341 1 + G A UCEC 9070342 + 9070322 9070362 41 AGCTCAGGGGGCAGCTCTCGGCCCCAGATAGCTCAAATGTC AGCTCAGGGGGCAGCTCTCAGCCCCAGATAGCTCAAATGTC < 41bp 0.528816027953696 0.729539145083869 NA NA prediction 0.401446234260346 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9070342 chr12:9070341 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38110 0 0 0 0 1 PHC1 chr12:9070387 5'GT 9070387 Upstream 47bp 35071 chr17 61573863 61573863 1 + C T rs4979 61573864 + 61573844 61573884 41 TCTACCAGTCCAAGGAGGCCGGGCAGCGCCTGGCGTGAGTG TCTACCAGTCCAAGGAGGCTGGGCAGCGCCTGGCGTGAGTG < 41bp 0.514260516766754 0.714982805535065 NA NA prediction 0.401444577536624 Functional Gain - ACE ENSG00000159640;ENSG00000264813 CDS Human other chr17:61573864 chr17:61573863 synonymous SNV . 0 20 hm7G_associated_SNPs_38112 0 0 0 0 1 ACE chr17:61573877 5'GT 61573877 Upstream 15bp 35072 chrX 49021639 49021639 1 + C T rs183982494 49021640 + 49021620 49021660 41 GCTCCACCTGGTTATTCGTCGGCCTCTGGAGACCCACCCTG GCTCCACCTGGTTATTCGTTGGCCTCTGGAGACCCACCCTG < 41bp 0.516716620118278 0.717437340810992 NA NA prediction 0.401441441385429 Functional Gain - MAGIX ENSG00000017621 CDS Human other chrX:49021640 chrX:49021639 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_38113 0 0 0 0 1 MAGIX chrX:49021699 5'GT 49021699 Upstream 61bp 35073 chr7 30795070 30795070 1 + G A STAD 30795071 + 30795051 30795091 41 GAGAAGGAGGAGAAGCTGCGGGCAGCGGTGAAGCGGGTGCT GAGAAGGAGGAGAAGCTGCAGGCAGCGGTGAAGCGGGTGCT < 41bp 0.570564748058734 0.771285362512033 NA NA prediction 0.401441228906597 Functional Gain - INMT ENSG00000241644 CDS Human protein_coding chr7:30795071 chr7:30795070 nonsynonymous SNV 0.013 2 20 hm7G_associated_SNPs_38114 0 0 0 0 1 INMT chr7:30795038 3'AG 30795038 Downstream 33bp 35074 chr17 72343991 72343991 1 + C T UCEC 72343992 + 72343972 72344012 41 CAGTGCCTTCGAGGAGTCCCGGAACACCCTGACCTACGCCG CAGTGCCTTCGAGGAGTCCTGGAACACCCTGACCTACGCCG < 41bp 0.543125290743544 0.743844841448905 NA NA prediction 0.401439101410721 Functional Gain - KIF19 ENSG00000196169 CDS Human protein_coding chr17:72343992 chr17:72343991 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_38116 0 0 0 0 1 KIF19 chr17:72343916 3'AG 72343916 Downstream 76bp 35075 chr19 39669068 39669068 1 + C T SKCM 39669069 + 39669049 39669089 41 CCTCCTTCTCGACAGGTGTCGCCATCCCTGAAGGGCTTCCT CCTCCTTCTCGACAGGTGTTGCCATCCCTGAAGGGCTTCCT < 41bp 0.501485370727332 0.702203890186525 NA NA prediction 0.401437038918385 Functional Gain - PAK4 ENSG00000130669 CDS Human protein_coding chr19:39669069 chr19:39669068 nonsynonymous SNV 0.921 4 20 hm7G_associated_SNPs_38117 0 0 1 0 1 PAK4 chr19:39669064 3'AG 39669064 Downstream 5bp 35076 chr9 18906820 18906820 1 + C T BLCA 18906821 + 18906801 18906841 41 TGTGGAGTGTGTGCATGCCCGCACCAACAAGGCAGTGCCTG TGTGGAGTGTGTGCATGCCTGCACCAACAAGGCAGTGCCTG < 41bp 0.493705635136702 0.700717943234408 NA NA prediction 0.401435886468815 Functional Gain - ADAMTSL1 ENSG00000178031 CDS Human protein_coding chr9:18906821 chr9:18906820 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_38118 0 0 0 0 1 ADAMTSL1 chr9:18906910 5'GT 18906910 Upstream 91bp 35077 chr18 8818982 8818982 1 + C T ESCA 8818983 + 8818963 8819003 41 GCAGAAAGAGAACAGTCCCCGGAGAGGTGGCAGTTTCCTCT GCAGAAAGAGAACAGTCCCTGGAGAGGTGGCAGTTTCCTCT < 41bp 0.540637708256321 0.741352198213813 NA NA prediction 0.401428979914983 Functional Gain - MTCL1 ENSG00000168502 CDS Human protein_coding chr18:8818983 chr18:8818982 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_38119 0 0 1 0 1 MTCL1 chr18:8818961 3'AG 8818961 Downstream 22bp 35078 chr19 56520181 56520181 1 + C T STAD 56520182 + 56520162 56520202 41 CCAGAAGATCCTGAAGCAACGATGACTGACCAAGGACCAAG CCAGAAGATCCTGAAGCAATGATGACTGACCAAGGACCAAG < 41bp 0.514762433607296 0.715473506011704 NA NA prediction 0.401422144808816 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56520182 chr19:56520181 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_38121 0 0 0 0 2 NLRP5 chr19:56520154 3'AG 56520154 Downstream 28bp 35079 chr19 56520181 56520181 1 + C T STAD 56520182 + 56520162 56520202 41 CCAGAAGATCCTGAAGCAACGATGACTGACCAAGGACCAAG CCAGAAGATCCTGAAGCAATGATGACTGACCAAGGACCAAG < 41bp 0.514762433607296 0.715473506011704 NA NA prediction 0.401422144808816 Functional Gain - NLRP5 ENSG00000171487 CDS Human protein_coding chr19:56520182 chr19:56520181 nonsynonymous SNV 0.000 1 20 hm7G_associated_SNPs_38121 0 0 0 0 2 NLRP5 chr19:56520219 5'GT 56520219 Upstream 39bp 35080 chr1 156169930 156169930 1 + C T UCEC 156169931 + 156169911 156169951 41 CACCACTTATGAGCTCACCCGGAAGTTTGTAGCTGACTACA CACCACTTATGAGCTCACCTGGAAGTTTGTAGCTGACTACA < 41bp 0.531366132457179 0.732075403543188 NA NA prediction 0.401418542172017 Functional Gain - SLC25A44 ENSG00000160785 CDS Human protein_coding chr1:156169931 chr1:156169930 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_38122 0 0 1 0 1 SLC25A44 chr1:156170019 5'GT 156170019 Upstream 90bp 35081 chr17 57676800 57676800 1 + C T UCEC 57676801 + 57676781 57676821 41 GTGCTTATTTTCTGCATTTCGTGTGGAAGCTCAACTTCGAG GTGCTTATTTTCTGCATTTTGTGTGGAAGCTCAACTTCGAG < 41bp 0.522747346699688 0.723456420727116 NA NA prediction 0.401418148054855 Functional Gain - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57676801 chr17:57676800 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38123 0 0 0 0 2 DHX40 chr17:57676736 3'AG 57676736 Downstream 65bp 35082 chr17 57676800 57676800 1 + C T UCEC 57676801 + 57676781 57676821 41 GTGCTTATTTTCTGCATTTCGTGTGGAAGCTCAACTTCGAG GTGCTTATTTTCTGCATTTTGTGTGGAAGCTCAACTTCGAG < 41bp 0.522747346699688 0.723456420727116 NA NA prediction 0.401418148054855 Functional Gain - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57676801 chr17:57676800 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38123 0 0 0 0 2 DHX40 chr17:57676844 5'GT 57676844 Upstream 45bp 35083 chr1 55144992 55144992 1 + G T UCEC 55144993 + 55144973 55145013 41 ACCTGCTGCTGGCCGCCCTGGAAGGGCTGAAAGGCAGCTCA ACCTGCTGCTGGCCGCCCTTGAAGGGCTGAAAGGCAGCTCA < 41bp 0.34315214516789 0.700708195041124 NA NA prediction 0.401416390082248 Functional Gain - MROH7 ENSG00000184313;ENSG00000271723 CDS Human other chr1:55144993 chr1:55144992 synonymous SNV . 0 20 hm7G_associated_SNPs_38125 0 0 0 0 1 MROH7 chr1:55144936 3'AG 55144936 Downstream 57bp 35084 chr5 150632828 150632828 1 + C T CESC 150632829 + 150632809 150632849 41 TCGCCCTGGGCTTGCTTCTCGCGGCCCCTGCGCAAGCCCAC TCGCCCTGGGCTTGCTTCTTGCGGCCCCTGCGCAAGCCCAC < 41bp 0.508500599836195 0.709206588553999 NA NA prediction 0.401411977435608 Functional Gain - GM2A ENSG00000196743 CDS Human protein_coding chr5:150632829 chr5:150632828 synonymous SNV . 0 20 hm7G_associated_SNPs_38127 0 0 1 0 1 GM2A chr5:150632858 5'GT 150632858 Upstream 31bp 35085 chr16 675935 675935 1 + C T UCEC 675936 + 675916 675956 41 CCGGATCTTGGTTGGAAACCGGCTGCACCTGGCCTTCAAGC CCGGATCTTGGTTGGAAACTGGCTGCACCTGGCCTTCAAGC < 41bp 0.543745983026019 0.744451909812656 NA NA prediction 0.401411853573275 Functional Gain - RAB40C ENSG00000197562 CDS Human protein_coding chr16:675936 chr16:675935 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38128 0 0 1 0 1 RAB40C chr16:675899 3'AG 675899 Downstream 37bp 35086 chr19 10404521 10404521 1 + G A LUAD 10404522 + 10404502 10404542 41 CTCGGGGCCGTCATCGAGGGGCTGTTGCGTGTGGCCCGGGA CTCGGGGCCGTCATCGAGGAGCTGTTGCGTGTGGCCCGGGA < 41bp 0.60852512482134 0.809230356596545 NA NA prediction 0.401410463550411 Functional Gain - ICAM5 ENSG00000105376 CDS Human protein_coding chr19:10404522 chr19:10404521 nonsynonymous SNV 0.020 3 20 hm7G_associated_SNPs_38129 0 0 1 0 1 ICAM5 chr19:10404619 5'GT 10404619 Upstream 99bp 35087 chr11 121028915 121028915 1 + C T COAD 121028916 + 121028896 121028936 41 AAGAGCAGATTCTCATCAACGACCGGAACACGGTCAAGGTA AAGAGCAGATTCTCATCAATGACCGGAACACGGTCAAGGTA < 41bp 0.524277810411337 0.724982156795503 NA NA prediction 0.401408692768332 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:121028916 chr11:121028915 synonymous SNV . 0 20 hm7G_associated_SNPs_38130 0 0 0 0 1 TECTA chr11:121028933 5'GT 121028933 Upstream 19bp 35088 chr17 40936504 40936504 1 + C T HNSC 40936505 + 40936485 40936525 41 ATGAGGCCGTGGACGTGTACGCGTTCGGCATGTGCATGCTG ATGAGGCCGTGGACGTGTATGCGTTCGGCATGTGCATGCTG < 41bp 0.556224423530453 0.756928687682387 NA NA prediction 0.401408528303868 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936505 chr17:40936504 synonymous SNV . 0 20 hm7G_associated_SNPs_38131 0 0 1 0 2 WNK4 chr17:40936440 3'AG 40936440 Downstream 65bp 35089 chr17 40936504 40936504 1 + C T HNSC 40936505 + 40936485 40936525 41 ATGAGGCCGTGGACGTGTACGCGTTCGGCATGTGCATGCTG ATGAGGCCGTGGACGTGTATGCGTTCGGCATGTGCATGCTG < 41bp 0.556224423530453 0.756928687682387 NA NA prediction 0.401408528303868 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40936505 chr17:40936504 synonymous SNV . 0 20 hm7G_associated_SNPs_38131 0 0 1 0 2 WNK4 chr17:40936597 5'GT 40936597 Upstream 94bp 35090 chr3 15282026 15282026 1 + G T LUAD 15282027 + 15282007 15282047 41 CCTTGGAGTCATTTACGTTGGAAAGGAAGATACAGTGAAAA CCTTGGAGTCATTTACGTTTGAAAGGAAGATACAGTGAAAA < 41bp 0.701418150799203 0.902122211468037 NA NA prediction 0.401408121337669 Functional Gain - CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15282027 chr3:15282026 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_38132 0 0 1 0 2 CAPN7 chr3:15281980 3'AG 15281980 Downstream 47bp 35091 chr3 15282026 15282026 1 + G T LUAD 15282027 + 15282007 15282047 41 CCTTGGAGTCATTTACGTTGGAAAGGAAGATACAGTGAAAA CCTTGGAGTCATTTACGTTTGAAAGGAAGATACAGTGAAAA < 41bp 0.701418150799203 0.902122211468037 NA NA prediction 0.401408121337669 Functional Gain - CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15282027 chr3:15282026 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_38132 0 0 1 0 2 CAPN7 chr3:15282124 5'GT 15282124 Upstream 99bp 35092 chr16 66976106 66976106 1 + G A COAD 66976107 + 66976087 66976127 41 AGTTCCAGGAGATGATGGCGGACTCCATGTTTGTGATCCCT AGTTCCAGGAGATGATGGCAGACTCCATGTTTGTGATCCCT < 41bp 0.517549963344123 0.71825356002119 NA NA prediction 0.401407193354134 Functional Gain - CES2 ENSG00000172831 CDS Human protein_coding chr16:66976107 chr16:66976106 synonymous SNV . 0 20 hm7G_associated_SNPs_38133 0 0 1 0 1 CES2 chr16:66976008 3'AG 66976008 Downstream 99bp 35093 chr7 94047117 94047117 1 + G A LUSC 94047118 + 94047098 94047138 41 AGGAGAGAGGGGTGCTGCTGGCATACCTGGAGGCAAGGGAG AGGAGAGAGGGGTGCTGCTAGCATACCTGGAGGCAAGGGAG < 41bp 0.553049440421849 0.753752559793498 NA NA prediction 0.401406238743298 Functional Gain - COL1A2 ENSG00000164692 CDS Human protein_coding chr7:94047118 chr7:94047117 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_38134 0 0 0 6 1 COL1A2 chr7:94047143 5'GT 94047143 Upstream 27bp 35094 chr7 2611959 2611959 1 + C T UCEC 2611960 + 2611940 2611980 41 TCAGGCGCTCTGCCAGCAACGGTGAGCATGCCGATGGTGGC TCAGGCGCTCTGCCAGCAATGGTGAGCATGCCGATGGTGGC < 41bp 0.549497635566861 0.750200132793192 NA NA prediction 0.401404994452663 Functional Gain - IQCE ENSG00000106012 CDS Human protein_coding chr7:2611960 chr7:2611959 synonymous SNV . 0 20 hm7G_associated_SNPs_38135 0 0 0 0 1 IQCE chr7:2611960 5'GT 2611960 Upstream 2bp 35095 chr11 120989074 120989074 1 + C T UCEC 120989075 + 120989055 120989095 41 GAACTGCACCGTCAAGTGCCGCTGTCTGGATTTCAACAATG GAACTGCACCGTCAAGTGCTGCTGTCTGGATTTCAACAATG < 41bp 0.485553725425805 0.700701841615792 NA NA prediction 0.401403683231585 Functional Gain - TECTA ENSG00000109927 CDS Human protein_coding chr11:120989075 chr11:120989074 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_38136 0 0 1 0 1 TECTA chr11:120989015 3'AG 120989015 Downstream 60bp 35096 chr20 61869315 61869315 1 + G A rs191317028 61869316 + 61869296 61869336 41 CTGCAGAGCTGGAAGCGCGGGGACGACCCCTGGACGGAGCA CTGCAGAGCTGGAAGCGCGAGGACGACCCCTGGACGGAGCA < 41bp 0.599450456573931 0.800150978910316 NA NA prediction 0.401401044672771 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869316 chr20:61869315 nonsynonymous SNV 0.929 4 20 hm7G_associated_SNPs_38137 0 0 0 0 2 BIRC7 chr20:61869255 3'AG 61869255 Downstream 61bp 35097 chr20 61869315 61869315 1 + G A rs191317028 61869316 + 61869296 61869336 41 CTGCAGAGCTGGAAGCGCGGGGACGACCCCTGGACGGAGCA CTGCAGAGCTGGAAGCGCGAGGACGACCCCTGGACGGAGCA < 41bp 0.599450456573931 0.800150978910316 NA NA prediction 0.401401044672771 Functional Gain - BIRC7 ENSG00000101197 CDS Human protein_coding chr20:61869316 chr20:61869315 nonsynonymous SNV 0.929 4 20 hm7G_associated_SNPs_38137 0 0 0 0 2 BIRC7 chr20:61869354 5'GT 61869354 Upstream 40bp 35098 chr11 67818122 67818122 1 + G A UCEC 67818123 + 67818103 67818143 41 GCCTTCCTGCACGCCCTGCGGCTGCACTGGTGAGCGACCAC GCCTTCCTGCACGCCCTGCAGCTGCACTGGTGAGCGACCAC < 41bp 0.564147477976698 0.764847275905837 NA NA prediction 0.401399595858277 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818123 chr11:67818122 nonsynonymous SNV 0.985 5 20 hm7G_associated_SNPs_38138 0 0 1 0 2 TCIRG1 chr11:67818131 5'GT 67818131 Upstream 10bp 35099 chr11 67818122 67818122 1 + G A UCEC 67818123 + 67818103 67818143 41 GCCTTCCTGCACGCCCTGCGGCTGCACTGGTGAGCGACCAC GCCTTCCTGCACGCCCTGCAGCTGCACTGGTGAGCGACCAC < 41bp 0.564147477976698 0.764847275905837 NA NA prediction 0.401399595858277 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67818123 chr11:67818122 nonsynonymous SNV 0.985 5 20 hm7G_associated_SNPs_38138 0 0 1 0 2 TCIRG1 chr11:67818208 5'GT 67818208 Upstream 87bp 35100 chr7 30961752 30961752 1 + C T COAD 30961753 + 30961733 30961773 41 CCCTCCAGCTGGTGCTATGCGTGCTGGCTACTACCGACCGG CCCTCCAGCTGGTGCTATGTGTGCTGGCTACTACCGACCGG < 41bp 0.514172901619883 0.714872660970973 NA NA prediction 0.40139951870218 Functional Gain - AQP1 ENSG00000240583;ENSG00000250424 CDS Human other chr7:30961753 chr7:30961752 synonymous SNV . 0 20 hm7G_associated_SNPs_38139 0 0 1 0 2 AQP1 chr7:30961681 3'AG 30961681 Downstream 72bp 35101 chr7 30961752 30961752 1 + C T COAD 30961753 + 30961733 30961773 41 CCCTCCAGCTGGTGCTATGCGTGCTGGCTACTACCGACCGG CCCTCCAGCTGGTGCTATGTGTGCTGGCTACTACCGACCGG < 41bp 0.514172901619883 0.714872660970973 NA NA prediction 0.40139951870218 Functional Gain - AQP1 ENSG00000240583;ENSG00000250424 CDS Human other chr7:30961753 chr7:30961752 synonymous SNV . 0 20 hm7G_associated_SNPs_38139 0 0 1 0 2 AQP1 chr7:30961845 5'GT 30961845 Upstream 94bp 35102 chr1 43689857 43689857 1 + C T SARC 43689858 + 43689838 43689878 41 GAGAGATCCAGGAAAGAGACGAGACTATTCAAGACAAGGTG GAGAGATCCAGGAAAGAGATGAGACTATTCAAGACAAGGTG < 41bp 0.546522254953854 0.747221325340355 NA NA prediction 0.401398140773001 Functional Gain - CFAP57 ENSG00000243710 CDS Human protein_coding chr1:43689858 chr1:43689857 synonymous SNV . 0 20 hm7G_associated_SNPs_38140 0 0 0 0 1 CFAP57 chr1:43689875 5'GT 43689875 Upstream 19bp 35103 chr12 132635872 132635872 1 + C T COAD 132635873 + 132635853 132635893 41 TCTTTCACGTCAAGTACCGCGCCCGCTTCTTCCACCTGGCT TCTTTCACGTCAAGTACCGTGCCCGCTTCTTCCACCTGGCT < 41bp 0.518807928664005 0.719506451853761 NA NA prediction 0.401397046379512 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132635873 chr12:132635872 synonymous SNV . 0 20 hm7G_associated_SNPs_38141 0 0 0 0 2 NOC4L chr12:132635803 3'AG 132635803 Downstream 70bp 35104 chr12 132635872 132635872 1 + C T COAD 132635873 + 132635853 132635893 41 TCTTTCACGTCAAGTACCGCGCCCGCTTCTTCCACCTGGCT TCTTTCACGTCAAGTACCGTGCCCGCTTCTTCCACCTGGCT < 41bp 0.518807928664005 0.719506451853761 NA NA prediction 0.401397046379512 Functional Gain - NOC4L ENSG00000184967 CDS Human protein_coding chr12:132635873 chr12:132635872 synonymous SNV . 0 20 hm7G_associated_SNPs_38141 0 0 0 0 2 NOC4L chr12:132635913 5'GT 132635913 Upstream 42bp 35105 chr3 126748856 126748856 1 + C T CESC 126748857 + 126748837 126748877 41 ACCAGCGTGAGGGTGACCGCGGCAGCAAGATGGTCTCGGAG ACCAGCGTGAGGGTGACCGTGGCAGCAAGATGGTCTCGGAG < 41bp 0.52274227350799 0.723440540251693 NA NA prediction 0.401396533487405 Functional Gain - PLXNA1 ENSG00000114554 CDS Human protein_coding chr3:126748857 chr3:126748856 synonymous SNV . 0 20 hm7G_associated_SNPs_38142 0 0 1 0 1 PLXNA1 chr3:126748907 5'GT 126748907 Upstream 52bp 35106 chr16 23847620 23847620 1 + C T HNSC 23847621 + 23847601 23847641 41 GAACCACAAATTCACCGCCCGCTTCTTCAAGCAGCCCACCT GAACCACAAATTCACCGCCTGCTTCTTCAAGCAGCCCACCT < 41bp 0.504414224004542 0.70511102425057 NA NA prediction 0.401393600492056 Functional Gain - PRKCB ENSG00000166501 CDS Human protein_coding chr16:23847621 chr16:23847620 nonsynonymous SNV 0.986 4 20 hm7G_associated_SNPs_38144 0 0 1 0 1 PRKCB chr16:23847669 5'GT 23847669 Upstream 50bp 35107 chr3 53217551 53217551 1 + C T rs55709737 53217552 + 53217532 53217572 41 CCACCTTCTGTGACCACTGCGGCAGCCTGCTCTGGGGACTG CCACCTTCTGTGACCACTGTGGCAGCCTGCTCTGGGGACTG < 41bp 0.559242786146296 0.759939012089719 NA NA prediction 0.401392451886846 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53217552 chr3:53217551 synonymous SNV . 0 20 hm7G_associated_SNPs_38145 0 0 0 0 1 PRKCD chr3:53217597 5'GT 53217597 Upstream 47bp 35108 chr12 50471847 50471847 1 + C T SKCM 50471848 + 50471828 50471868 41 AGGATGAACCTCCTTTCATCGACCAGCTGGGCTTTGGCGTG AGGATGAACCTCCTTTCATTGACCAGCTGGGCTTTGGCGTG < 41bp 0.548387554759164 0.749082084578782 NA NA prediction 0.401389059639236 Functional Gain - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50471848 chr12:50471847 synonymous SNV . 0 20 hm7G_associated_SNPs_38147 0 0 0 0 2 ASIC1 chr12:50471783 3'AG 50471783 Downstream 65bp 35109 chr12 50471847 50471847 1 + C T SKCM 50471848 + 50471828 50471868 41 AGGATGAACCTCCTTTCATCGACCAGCTGGGCTTTGGCGTG AGGATGAACCTCCTTTCATTGACCAGCTGGGCTTTGGCGTG < 41bp 0.548387554759164 0.749082084578782 NA NA prediction 0.401389059639236 Functional Gain - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50471848 chr12:50471847 synonymous SNV . 0 20 hm7G_associated_SNPs_38147 0 0 0 0 2 ASIC1 chr12:50471910 5'GT 50471910 Upstream 64bp 35110 chr19 11132497 11132497 1 + C T UCEC 11132498 + 11132478 11132518 41 CACGCACTATGTGGCACCCCGCCGCCTGCTGCTGACGGGCA CACGCACTATGTGGCACCCTGCCGCCTGCTGCTGACGGGCA < 41bp 0.528377607524218 0.729071810921859 NA NA prediction 0.401388406795283 Functional Gain - SMARCA4 ENSG00000127616 CDS Human protein_coding chr19:11132498 chr19:11132497 nonsynonymous SNV 0.257 5 20 hm7G_associated_SNPs_38148 0 0 1 0 1 SMARCA4 chr19:11132401 3'AG 11132401 Downstream 97bp 35111 chr2 232656447 232656447 1 + C T COAD 232656448 + 232656428 232656468 41 TTTTTTCCTCTTCAGCTTGCGGAAGGAGCTAATGCTGCTTA TTTTTTCCTCTTCAGCTTGTGGAAGGAGCTAATGCTGCTTA < 41bp 0.534217080267259 0.734907967828817 NA NA prediction 0.401381775123114 Functional Gain - COPS7B ENSG00000144524 CDS Human protein_coding chr2:232656448 chr2:232656447 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_38150 0 0 1 8 2 COPS7B chr2:232656443 3'AG 232656443 Downstream 5bp 35112 chr2 232656447 232656447 1 + C T COAD 232656448 + 232656428 232656468 41 TTTTTTCCTCTTCAGCTTGCGGAAGGAGCTAATGCTGCTTA TTTTTTCCTCTTCAGCTTGTGGAAGGAGCTAATGCTGCTTA < 41bp 0.534217080267259 0.734907967828817 NA NA prediction 0.401381775123114 Functional Gain - COPS7B ENSG00000144524 CDS Human protein_coding chr2:232656448 chr2:232656447 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_38150 0 0 1 8 2 COPS7B chr2:232656518 5'GT 232656518 Upstream 72bp 35113 chrX 128723914 128723914 1 + C T STAD 128723915 + 128723895 128723935 41 AATTCTCTGAATACAATAGCGTCAATGCCAACATGATCGGT AATTCTCTGAATACAATAGTGTCAATGCCAACATGATCGGT < 41bp 0.49797888348479 0.700687750452995 NA NA prediction 0.401375500905989 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128723915 chrX:128723914 synonymous SNV . 0 20 hm7G_associated_SNPs_38151 0 0 0 0 2 OCRL chrX:128723822 3'AG 128723822 Downstream 93bp 35114 chrX 128723914 128723914 1 + C T STAD 128723915 + 128723895 128723935 41 AATTCTCTGAATACAATAGCGTCAATGCCAACATGATCGGT AATTCTCTGAATACAATAGTGTCAATGCCAACATGATCGGT < 41bp 0.49797888348479 0.700687750452995 NA NA prediction 0.401375500905989 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128723915 chrX:128723914 synonymous SNV . 0 20 hm7G_associated_SNPs_38151 0 0 0 0 2 OCRL chrX:128723933 5'GT 128723933 Upstream 20bp 35115 chr16 20429586 20429586 1 + G A PRAD 20429587 + 20429567 20429607 41 GTCAGTGTGGCTTGCATGCGGACAGGTCAGTAAGCAGGGCT GTCAGTGTGGCTTGCATGCAGACAGGTCAGTAAGCAGGGCT < 41bp 0.523748776118679 0.724436311712366 NA NA prediction 0.401375071187376 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20429587 chr16:20429586 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_38152 0 0 0 0 1 ACSM5 chr16:20429591 5'GT 20429591 Upstream 6bp 35116 chr5 1219023 1219023 1 + G A SKCM 1219024 + 1219004 1219044 41 TGTCATCCGTGCAGGCCGTGGAGGGCACAGGCCTGGCCTTC TGTCATCCGTGCAGGCCGTAGAGGGCACAGGCCTGGCCTTC < 41bp 0.534863463318712 0.735550051619157 NA NA prediction 0.40137317660089 Functional Gain - SLC6A19 ENSG00000174358 CDS Human protein_coding chr5:1219024 chr5:1219023 synonymous SNV . 0 20 hm7G_associated_SNPs_38153 0 0 0 0 1 SLC6A19 chr5:1219018 3'AG 1219018 Downstream 6bp 35117 chrX 47086262 47086262 1 + G A GBM 47086263 + 47086243 47086283 41 CAGGCCGTCCCCTCTTTCCGGGCTCCACGGTGGAGGAACAG CAGGCCGTCCCCTCTTTCCAGGCTCCACGGTGGAGGAACAG < 41bp 0.566506348253247 0.767192569262377 NA NA prediction 0.401372442018259 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47086263 chrX:47086262 synonymous SNV . 0 20 hm7G_associated_SNPs_38154 0 0 1 0 2 CDK16 chrX:47086211 3'AG 47086211 Downstream 52bp 35118 chrX 47086262 47086262 1 + G A GBM 47086263 + 47086243 47086283 41 CAGGCCGTCCCCTCTTTCCGGGCTCCACGGTGGAGGAACAG CAGGCCGTCCCCTCTTTCCAGGCTCCACGGTGGAGGAACAG < 41bp 0.566506348253247 0.767192569262377 NA NA prediction 0.401372442018259 Functional Gain - CDK16 ENSG00000102225 CDS Human protein_coding chrX:47086263 chrX:47086262 synonymous SNV . 0 20 hm7G_associated_SNPs_38154 0 0 1 0 2 CDK16 chrX:47086308 5'GT 47086308 Upstream 47bp 35119 chr16 20442373 20442373 1 + C T PAAD 20442374 + 20442354 20442394 41 TCTGGATCCATGGGGAAGGCGTCCCCACCCTACGATGTGCA TCTGGATCCATGGGGAAGGTGTCCCCACCCTACGATGTGCA < 41bp 0.496509981213091 0.700685651194705 NA NA prediction 0.401371302389409 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442374 chr16:20442373 nonsynonymous SNV 0.543 2 20 hm7G_associated_SNPs_38155 0 0 0 0 2 ACSM5 chr16:20442315 3'AG 20442315 Downstream 59bp 35120 chr16 20442373 20442373 1 + C T PAAD 20442374 + 20442354 20442394 41 TCTGGATCCATGGGGAAGGCGTCCCCACCCTACGATGTGCA TCTGGATCCATGGGGAAGGTGTCCCCACCCTACGATGTGCA < 41bp 0.496509981213091 0.700685651194705 NA NA prediction 0.401371302389409 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20442374 chr16:20442373 nonsynonymous SNV 0.543 2 20 hm7G_associated_SNPs_38155 0 0 0 0 2 ACSM5 chr16:20442395 5'GT 20442395 Upstream 23bp 35121 chrX 48121246 48121246 1 + C T UCEC 48121247 + 48121227 48121267 41 AGGCTCCACAGAATCATCCCGAAGGTGAGTATCTCTCAAAT AGGCTCCACAGAATCATCCTGAAGGTGAGTATCTCTCAAAT < 41bp 0.500876239069158 0.701561390901057 NA NA prediction 0.401370303663796 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48121247 chrX:48121246 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_38156 0 0 1 0 2 SSX1 chrX:48121201 3'AG 48121201 Downstream 46bp 35122 chrX 48121246 48121246 1 + C T UCEC 48121247 + 48121227 48121267 41 AGGCTCCACAGAATCATCCCGAAGGTGAGTATCTCTCAAAT AGGCTCCACAGAATCATCCTGAAGGTGAGTATCTCTCAAAT < 41bp 0.500876239069158 0.701561390901057 NA NA prediction 0.401370303663796 Functional Gain - SSX1 ENSG00000126752 CDS Human protein_coding chrX:48121247 chrX:48121246 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_38156 0 0 1 0 2 SSX1 chrX:48121250 5'GT 48121250 Upstream 5bp 35123 chr3 133483076 133483076 1 + G A COAD 133483077 + 133483057 133483097 41 GAGGGTTTGTCTACATAGCGGGCAAGTGTGGTCTGGTGCCT GAGGGTTTGTCTACATAGCAGGCAAGTGTGGTCTGGTGCCT < 41bp 0.544663719220399 0.745348794867376 NA NA prediction 0.401370151293954 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133483077 chr3:133483076 synonymous SNV . 0 20 hm7G_associated_SNPs_38158 0 0 1 0 2 TF chr3:133483026 3'AG 133483026 Downstream 51bp 35124 chr3 133483076 133483076 1 + G A COAD 133483077 + 133483057 133483097 41 GAGGGTTTGTCTACATAGCGGGCAAGTGTGGTCTGGTGCCT GAGGGTTTGTCTACATAGCAGGCAAGTGTGGTCTGGTGCCT < 41bp 0.544663719220399 0.745348794867376 NA NA prediction 0.401370151293954 Functional Gain - TF ENSG00000091513 CDS Human protein_coding chr3:133483077 chr3:133483076 synonymous SNV . 0 20 hm7G_associated_SNPs_38158 0 0 1 0 2 TF chr3:133483119 5'GT 133483119 Upstream 44bp 35125 chr9 139228958 139228958 1 + G A rs199980435 139228959 + 139228939 139228979 41 GCGAGCGTCTGTGCAAGGCGGGCGACTTCAAGACAGGCGTG GCGAGCGTCTGTGCAAGGCAGGCGACTTCAAGACAGGCGTG < 41bp 0.594953722346518 0.795638497933382 NA NA prediction 0.401369551173729 Functional Gain - GPSM1 ENSG00000160360 CDS Human protein_coding chr9:139228959 chr9:139228958 synonymous SNV . 0 20 hm7G_associated_SNPs_38159 0 0 1 0 1 GPSM1 chr9:139228904 3'AG 139228904 Downstream 55bp 35126 chr22 42956231 42956231 1 + G T SKCM 42956232 + 42956212 42956252 41 ACTTGAGTGAGGAGTGCGGGGAGCTTCTCCTGCAAAGAGGA ACTTGAGTGAGGAGTGCGGTGAGCTTCTCCTGCAAAGAGGA < 41bp 0.341946726711277 0.700683623880825 NA NA prediction 0.40136724776165 Functional Gain - SERHL2 ENSG00000183569 CDS Human protein_coding chr22:42956232 chr22:42956231 synonymous SNV . 0 20 hm7G_associated_SNPs_38162 0 0 1 0 2 SERHL2 chr22:42956192 3'AG 42956192 Downstream 40bp 35127 chr22 42956231 42956231 1 + G T SKCM 42956232 + 42956212 42956252 41 ACTTGAGTGAGGAGTGCGGGGAGCTTCTCCTGCAAAGAGGA ACTTGAGTGAGGAGTGCGGTGAGCTTCTCCTGCAAAGAGGA < 41bp 0.341946726711277 0.700683623880825 NA NA prediction 0.40136724776165 Functional Gain - SERHL2 ENSG00000183569 CDS Human protein_coding chr22:42956232 chr22:42956231 synonymous SNV . 0 20 hm7G_associated_SNPs_38162 0 0 1 0 2 SERHL2 chr22:42956271 5'GT 42956271 Upstream 41bp 35128 chr17 36626089 36626089 1 + C T CESC 36626090 + 36626070 36626110 41 TCGACCCTCGCTTTCCAGGCGCCTGCCAAACCGCATACCCA TCGACCCTCGCTTTCCAGGTGCCTGCCAAACCGCATACCCA < 41bp 0.544892709860852 0.745575917189637 NA NA prediction 0.401366414657571 Functional Gain - ARHGAP23 ENSG00000225485 CDS Human other chr17:36626090 chr17:36626089 nonsynonymous SNV 0.954 0 20 hm7G_associated_SNPs_38163 0 0 0 0 2 ARHGAP23 chr17:36626088 3'AG 36626088 Downstream 2bp 35129 chr17 36626089 36626089 1 + C T CESC 36626090 + 36626070 36626110 41 TCGACCCTCGCTTTCCAGGCGCCTGCCAAACCGCATACCCA TCGACCCTCGCTTTCCAGGTGCCTGCCAAACCGCATACCCA < 41bp 0.544892709860852 0.745575917189637 NA NA prediction 0.401366414657571 Functional Gain - ARHGAP23 ENSG00000225485 CDS Human other chr17:36626090 chr17:36626089 nonsynonymous SNV 0.954 0 20 hm7G_associated_SNPs_38163 0 0 0 0 2 ARHGAP23 chr17:36626145 5'GT 36626145 Upstream 57bp 35130 chr1 165872483 165872483 1 + C T BRCA 165872484 + 165872464 165872504 41 TATCTCAGTACATTACGTTCGTCAAGCCTGCCTTTGAGGAA TATCTCAGTACATTACGTTTGTCAAGCCTGCCTTTGAGGAA < 41bp 0.532111263078447 0.732794447790693 NA NA prediction 0.401366369424492 Functional Gain - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165872484 chr1:165872483 synonymous SNV . 0 20 hm7G_associated_SNPs_38164 0 0 1 0 2 UCK2 chr1:165872419 3'AG 165872419 Downstream 65bp 35131 chr1 165872483 165872483 1 + C T BRCA 165872484 + 165872464 165872504 41 TATCTCAGTACATTACGTTCGTCAAGCCTGCCTTTGAGGAA TATCTCAGTACATTACGTTTGTCAAGCCTGCCTTTGAGGAA < 41bp 0.532111263078447 0.732794447790693 NA NA prediction 0.401366369424492 Functional Gain - UCK2 ENSG00000143179 CDS Human protein_coding chr1:165872484 chr1:165872483 synonymous SNV . 0 20 hm7G_associated_SNPs_38164 0 0 1 0 2 UCK2 chr1:165872516 5'GT 165872516 Upstream 34bp 35132 chr8 2021538 2021538 1 + C T UCEC 2021539 + 2021519 2021559 41 CACCCTGCGCATCGTGTCTCGGGGCGGCGTCAGCGACCACA CACCCTGCGCATCGTGTCTTGGGGCGGCGTCAGCGACCACA < 41bp 0.487471069065632 0.700683122292861 NA NA prediction 0.401366244585722 Functional Gain - MYOM2 ENSG00000036448 CDS Human protein_coding chr8:2021539 chr8:2021538 nonsynonymous SNV 0.036 2 20 hm7G_associated_SNPs_38165 0 0 0 0 1 MYOM2 chr8:2021580 5'GT 2021580 Upstream 43bp 35133 chr19 35791238 35791238 1 + G A UCEC 35791239 + 35791219 35791259 41 GGTGACCCCCGCCGAAGACGGCGTCTATGCCTGCCTGGCCG GGTGACCCCCGCCGAAGACAGCGTCTATGCCTGCCTGGCCG < 41bp 0.469355904502503 0.700682370023333 NA NA prediction 0.401364740046666 Functional Gain - MAG ENSG00000105695 CDS Human protein_coding chr19:35791239 chr19:35791238 nonsynonymous SNV 0.992 4 20 hm7G_associated_SNPs_38166 0 0 0 0 1 MAG chr19:35791307 5'GT 35791307 Upstream 70bp 35134 chr17 42254135 42254135 1 + C T UCEC 42254136 + 42254116 42254156 41 TTGCTGCTGGAAGCAGGAGCGACGGTGAACCTGGCAGCAGG TTGCTGCTGGAAGCAGGAGTGACGGTGAACCTGGCAGCAGG < 41bp 0.52235509135014 0.723035854989881 NA NA prediction 0.401361527279482 Functional Gain - ASB16 ENSG00000161664 CDS Human protein_coding chr17:42254136 chr17:42254135 nonsynonymous SNV 0.344 2 20 hm7G_associated_SNPs_38169 0 0 0 0 1 ASB16 chr17:42254106 3'AG 42254106 Downstream 30bp 35135 chr17 48614102 48614102 1 + G A rs375776700 48614103 + 48614083 48614123 41 GTCATGGGCATGCTGTGGCGGCGGCTCAATGACAGCGGCAA GTCATGGGCATGCTGTGGCAGCGGCTCAATGACAGCGGCAA < 41bp 0.553175891105661 0.753854734774095 NA NA prediction 0.401357687336869 Functional Gain - EPN3 ENSG00000049283 CDS Human protein_coding chr17:48614103 chr17:48614102 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_38172 0 0 0 0 1 EPN3 chr17:48614069 3'AG 48614069 Downstream 34bp 35136 chr1 160327005 160327005 1 + C T HNSC 160327006 + 160326986 160327026 41 GAGCCGCTGGAAAGATATCCGTGCCCGGATATTTCTCATCG GAGCCGCTGGAAAGATATCTGTGCCCGGATATTTCTCATCG < 41bp 0.497005663054105 0.700678133416457 NA NA prediction 0.401356266832915 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160327006 chr1:160327005 nonsynonymous SNV 0.989 3 20 hm7G_associated_SNPs_38174 0 0 1 0 1 NCSTN chr1:160327043 5'GT 160327043 Upstream 39bp 35137 chr9 138670667 138670667 1 + C T STAD 138670668 + 138670648 138670688 41 CAACGTGCAGACCATGTTCCGGTGCGTCCAGTGTCCGGGGC CAACGTGCAGACCATGTTCTGGTGCGTCCAGTGTCCGGGGC < 41bp 0.536363128473091 0.737040783422276 NA NA prediction 0.401355309898369 Functional Gain - KCNT1 ENSG00000107147 CDS Human protein_coding chr9:138670668 chr9:138670667 nonsynonymous SNV 0.987 3 20 hm7G_associated_SNPs_38175 0 0 0 0 1 KCNT1 chr9:138670668 5'GT 138670668 Upstream 2bp 35138 chr6 88321960 88321960 1 + C T UCEC 88321961 + 88321941 88321981 41 AGCACCTGACTACGGTACTCGATAAGGTAAAAAGAATAAGT AGCACCTGACTACGGTACTTGATAAGGTAAAAAGAATAAGT < 41bp 0.502624492724113 0.703302009536763 NA NA prediction 0.401355033625299 Functional Gain - ORC3 ENSG00000135336 CDS Human protein_coding chr6:88321961 chr6:88321960 synonymous SNV . 0 20 hm7G_associated_SNPs_38177 0 0 0 2 1 ORC3 chr6:88321966 5'GT 88321966 Upstream 7bp 35139 chr11 107966313 107966313 1 + C T UCEC 107966314 + 107966294 107966334 41 AGGTAACCACGTTTCAGCTCGCTGTATTGTTTGCATGGAAC AGGTAACCACGTTTCAGCTTGCTGTATTGTTTGCATGGAAC < 41bp 0.524895997107031 0.725571769357102 NA NA prediction 0.401351544500143 Functional Gain - CUL5 ENSG00000166266 CDS Human protein_coding chr11:107966314 chr11:107966313 synonymous SNV . 0 20 hm7G_associated_SNPs_38180 0 0 1 0 1 CUL5 chr11:107966257 3'AG 107966257 Downstream 57bp 35140 chrX 26211971 26211971 1 + G T LUAD 26211972 + 26211952 26211992 41 GCCACAGCCATCATGCCTCGGGGTCACAAGAGTAAGCTCCG GCCACAGCCATCATGCCTCTGGGTCACAAGAGTAAGCTCCG < 41bp 0.697916760364358 0.898592014329565 NA NA prediction 0.401350507930414 Functional Gain - MAGEB6 ENSG00000176746 CDS Human protein_coding chrX:26211972 chrX:26211971 nonsynonymous SNV 0.973 3 20 hm7G_associated_SNPs_38181 0 0 0 0 1 MAGEB6 chrX:26211903 3'AG 26211903 Downstream 69bp 35141 chr1 110032957 110032957 1 + G A CESC 110032958 + 110032938 110032978 41 TTTAGCCGCCGGCTGGACCGGTTCTGCTCAGCACTCAGCTC TTTAGCCGCCGGCTGGACCAGTTCTGCTCAGCACTCAGCTC < 41bp 0.558359398961016 0.759034262866823 NA NA prediction 0.401349727811613 Functional Gain - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110032958 chr1:110032957 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38182 0 0 1 0 2 ATXN7L2 chr1:110032893 3'AG 110032893 Downstream 65bp 35142 chr1 110032957 110032957 1 + G A CESC 110032958 + 110032938 110032978 41 TTTAGCCGCCGGCTGGACCGGTTCTGCTCAGCACTCAGCTC TTTAGCCGCCGGCTGGACCAGTTCTGCTCAGCACTCAGCTC < 41bp 0.558359398961016 0.759034262866823 NA NA prediction 0.401349727811613 Functional Gain - ATXN7L2 ENSG00000162650 CDS Human protein_coding chr1:110032958 chr1:110032957 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38182 0 0 1 0 2 ATXN7L2 chr1:110033014 5'GT 110033014 Upstream 58bp 35143 chr16 28883182 28883182 1 + C T UCEC 28883183 + 28883163 28883203 41 GCCGCCTCCCATTTTGACTCGATGGAACTGCTTCCCCCAGA GCCGCCTCCCATTTTGACTTGATGGAACTGCTTCCCCCAGA < 41bp 0.554002402325286 0.754672173041965 NA NA prediction 0.401339541433358 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28883183 chr16:28883182 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_38185 0 0 1 0 1 SH2B1 chr16:28883101 3'AG 28883101 Downstream 82bp 35144 chr11 1104141 1104141 1 + G A rs41533645 1104142 + 1104122 1104162 41 CCTGAGCTGCCCCAATGGCGGCTCGCTGACACACACCTACA CCTGAGCTGCCCCAATGGCAGCTCGCTGACACACACCTACA < 41bp 0.549401005086015 0.750070640463807 NA NA prediction 0.401339270755583 Functional Gain - MUC2 ENSG00000198788 CDS Human processed_transcript chr11:1104142 chr11:1104141 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_38186 0 0 0 0 1 MUC2 chr11:1104044 3'AG 1104044 Downstream 98bp 35145 chr6 130392134 130392134 1 + C T UCEC 130392135 + 130392115 130392155 41 CCATAGACAGTGATCCCATCGGGCTTTCGAGTTGGTATGAA CCATAGACAGTGATCCCATTGGGCTTTCGAGTTGGTATGAA < 41bp 0.55985166450376 0.76052021083233 NA NA prediction 0.401337092657139 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130392135 chr6:130392134 nonsynonymous SNV 0.999 3 20 hm7G_associated_SNPs_38187 0 0 0 0 1 L3MBTL3 chr6:130392121 3'AG 130392121 Downstream 14bp 35146 chr4 8609139 8609139 1 + C T LGG 8609140 + 8609120 8609160 41 GAGAAGATGTTTTCTCCCACGCCCGACGAGAAGGTGAGAGG GAGAAGATGTTTTCTCCCATGCCCGACGAGAAGGTGAGAGG < 41bp 0.500028463359802 0.700696481922989 NA NA prediction 0.401336037126374 Functional Gain - CPZ ENSG00000109625 CDS Human protein_coding chr4:8609140 chr4:8609139 nonsynonymous SNV 0.705 4 20 hm7G_associated_SNPs_38188 0 0 0 0 1 CPZ chr4:8609152 5'GT 8609152 Upstream 14bp 35147 chr1 46033822 46033822 1 + G A rs140332035 46033823 + 46033803 46033843 41 TTGATGACATACTCAGTGTGGCCTCCGTGCGTCCAGCTGTC TTGATGACATACTCAGTGTAGCCTCCGTGCGTCCAGCTGTC < 41bp 0.560418398345666 0.761084153608912 NA NA prediction 0.401331510526493 Functional Gain - AKR1A1 ENSG00000117448 CDS Human protein_coding chr1:46033823 chr1:46033822 synonymous SNV . 0 20 hm7G_associated_SNPs_38191 0 0 1 0 1 AKR1A1 chr1:46033849 5'GT 46033849 Upstream 28bp 35148 chr3 32806208 32806208 1 + C T UCEC 32806209 + 32806189 32806229 41 CTCAGTGCTACCCCAGTTCCGTCAACTCTGCCAGGACTGTG CTCAGTGCTACCCCAGTTCTGTCAACTCTGCCAGGACTGTG < 41bp 0.527481525677767 0.728146626080063 NA NA prediction 0.401330200804592 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32806209 chr3:32806208 synonymous SNV . 0 20 hm7G_associated_SNPs_38192 0 0 1 0 2 CNOT10 chr3:32806174 3'AG 32806174 Downstream 35bp 35149 chr3 32806208 32806208 1 + C T UCEC 32806209 + 32806189 32806229 41 CTCAGTGCTACCCCAGTTCCGTCAACTCTGCCAGGACTGTG CTCAGTGCTACCCCAGTTCTGTCAACTCTGCCAGGACTGTG < 41bp 0.527481525677767 0.728146626080063 NA NA prediction 0.401330200804592 Functional Gain - CNOT10 ENSG00000182973 CDS Human protein_coding chr3:32806209 chr3:32806208 synonymous SNV . 0 20 hm7G_associated_SNPs_38192 0 0 1 0 2 CNOT10 chr3:32806301 5'GT 32806301 Upstream 94bp 35150 chr6 33374229 33374229 1 + C T COAD 33374230 + 33374210 33374250 41 ATTAACAGCAGCCTGTCCACGCTGGGGCTGGTTATCATGGC ATTAACAGCAGCCTGTCCATGCTGGGGCTGGTTATCATGGC < 41bp 0.516593494146587 0.717258507691576 NA NA prediction 0.401330027089978 Functional Gain - KIFC1 ENSG00000237649 CDS Human protein_coding chr6:33374230 chr6:33374229 nonsynonymous SNV 0.449 4 20 hm7G_associated_SNPs_38193 0 0 0 0 1 KIFC1 chr6:33374263 5'GT 33374263 Upstream 35bp 35151 chr6 16254924 16254924 1 + C T BLCA 16254925 + 16254905 16254945 41 CAGAACATTTTGTGGAATTCGTGAAACTTGTCCGTGCCAAA CAGAACATTTTGTGGAATTTGTGAAACTTGTCCGTGCCAAA < 41bp 0.525208721243572 0.725873631859336 NA NA prediction 0.401329821231529 Functional Gain - GMPR ENSG00000137198 CDS Human protein_coding chr6:16254925 chr6:16254924 synonymous SNV . 0 20 hm7G_associated_SNPs_38194 0 0 1 0 1 GMPR chr6:16254966 5'GT 16254966 Upstream 43bp 35152 chr14 23352570 23352570 1 + G A rs368184584 23352571 + 23352551 23352591 41 TGCCCCTCTGGCAGCCGCCGGGCCTCCCCTCCAGGGACGCC TGCCCCTCTGGCAGCCGCCAGGCCTCCCCTCCAGGGACGCC < 41bp 0.56508610681946 0.76575000342635 NA NA prediction 0.40132779321378 Functional Gain - REM2 ENSG00000139890 CDS Human protein_coding chr14:23352571 chr14:23352570 nonsynonymous SNV 0.029 0 20 hm7G_associated_SNPs_38197 0 0 0 0 1 REM2 chr14:23352599 5'GT 23352599 Upstream 30bp 35153 chr12 49944102 49944102 1 + C T rs182924858 49944103 + 49944083 49944123 41 TCAAGGGTGGCACCGTGCTCGCCATCCTAGGTTTGTGAGGG TCAAGGGTGGCACCGTGCTTGCCATCCTAGGTTTGTGAGGG < 41bp 0.493245560376435 0.700663881279429 NA NA prediction 0.401327762558858 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49944103 chr12:49944102 synonymous SNV . 0 20 hm7G_associated_SNPs_38198 0 0 0 0 1 KCNH3 chr12:49944112 5'GT 49944112 Upstream 11bp 35154 chr16 81953228 81953228 1 + C T COAD 81953229 + 81953209 81953249 41 CTACCGAAAGATGAGACTGCGCTACCCCGTGACCCCCGAGC CTACCGAAAGATGAGACTGTGCTACCCCGTGACCCCCGAGC < 41bp 0.481739113800649 0.700661685735102 NA NA prediction 0.401323371470204 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81953229 chr16:81953228 nonsynonymous SNV 0.980 3 20 hm7G_associated_SNPs_38199 0 0 0 0 1 PLCG2 chr16:81953269 5'GT 81953269 Upstream 42bp 35155 chr19 4345799 4345799 1 + G A UCEC 4345800 + 4345780 4345820 41 GATCATGTGGCAGGAGACCGGGCAGACCTTCAACTCACCCA GATCATGTGGCAGGAGACCAGGCAGACCTTCAACTCACCCA < 41bp 0.583831320578954 0.784492017708923 NA NA prediction 0.401321394259937 Functional Gain - MPND ENSG00000008382 CDS Human protein_coding chr19:4345800 chr19:4345799 nonsynonymous SNV 0.183 3 20 hm7G_associated_SNPs_38200 0 0 1 0 1 MPND chr19:4345742 3'AG 4345742 Downstream 58bp 35156 chr10 82363518 82363518 1 + C T GBM 82363519 + 82363499 82363539 41 TACCACCACCTCCCCGACCCGGGTCTGCCGCAGCCCCTTGC TACCACCACCTCCCCGACCTGGGTCTGCCGCAGCCCCTTGC < 41bp 0.527400659265303 0.728060974467439 NA NA prediction 0.401320630404271 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82363519 chr10:82363518 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_38201 0 0 0 0 1 SH2D4B chr10:82363551 5'GT 82363551 Upstream 34bp 35157 chrX 69645206 69645206 1 + C T UCEC 69645207 + 69645187 69645227 41 CTCCTGCCCCTTTGCAGTGCGACTGTATCTGGTTTGGCCTG CTCCTGCCCCTTTGCAGTGTGACTGTATCTGGTTTGGCCTG < 41bp 0.53272849720537 0.733388573891144 NA NA prediction 0.401320153371548 Functional Gain - GDPD2 ENSG00000130055 CDS Human protein_coding chrX:69645207 chrX:69645206 synonymous SNV . 0 20 hm7G_associated_SNPs_38202 0 0 0 0 1 GDPD2 chrX:69645204 3'AG 69645204 Downstream 3bp 35158 chr19 19349153 19349153 1 + G T LUSC 19349154 + 19349134 19349174 41 CATGGGAAGATGCCGAGAAGGACTGCCGCCGCCGCTCCGGC CATGGGAAGATGCCGAGAATGACTGCCGCCGCCGCTCCGGC < 41bp 0.344769930495129 0.700659802892852 NA NA prediction 0.401319605785704 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349154 chr19:19349153 nonsynonymous SNV 0.848 1 20 hm7G_associated_SNPs_38204 0 0 0 0 2 NCAN chr19:19349062 3'AG 19349062 Downstream 92bp 35159 chr19 19349153 19349153 1 + G T LUSC 19349154 + 19349134 19349174 41 CATGGGAAGATGCCGAGAAGGACTGCCGCCGCCGCTCCGGC CATGGGAAGATGCCGAGAATGACTGCCGCCGCCGCTCCGGC < 41bp 0.344769930495129 0.700659802892852 NA NA prediction 0.401319605785704 Functional Gain - NCAN ENSG00000130287 CDS Human protein_coding chr19:19349154 chr19:19349153 nonsynonymous SNV 0.848 1 20 hm7G_associated_SNPs_38204 0 0 0 0 2 NCAN chr19:19349220 5'GT 19349220 Upstream 68bp 35160 chr1 212532091 212532091 1 + C T UCEC 212532092 + 212532072 212532112 41 AAATGAATGGCAAGCTTTTCGATGACCTTACTAGCTCATAC AAATGAATGGCAAGCTTTTTGATGACCTTACTAGCTCATAC < 41bp 0.520680382625894 0.721339126336948 NA NA prediction 0.401317487422107 Functional Gain - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212532092 chr1:212532091 synonymous SNV . 0 20 hm7G_associated_SNPs_38206 0 0 0 0 2 PPP2R5A chr1:212532028 3'AG 212532028 Downstream 64bp 35161 chr1 212532091 212532091 1 + C T UCEC 212532092 + 212532072 212532112 41 AAATGAATGGCAAGCTTTTCGATGACCTTACTAGCTCATAC AAATGAATGGCAAGCTTTTTGATGACCTTACTAGCTCATAC < 41bp 0.520680382625894 0.721339126336948 NA NA prediction 0.401317487422107 Functional Gain - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212532092 chr1:212532091 synonymous SNV . 0 20 hm7G_associated_SNPs_38206 0 0 0 0 2 PPP2R5A chr1:212532129 5'GT 212532129 Upstream 39bp 35162 chr11 71169579 71169579 1 + C T CESC 71169580 + 71169560 71169600 41 TCACTCAGGACATCATCTGCGACGTGGGGATGTAAGTGCCA TCACTCAGGACATCATCTGTGACGTGGGGATGTAAGTGCCA < 41bp 0.517427036657385 0.718085643925639 NA NA prediction 0.401317214536508 Functional Gain - NADSYN1 ENSG00000172890 CDS Human protein_coding chr11:71169580 chr11:71169579 synonymous SNV . 0 20 hm7G_associated_SNPs_38207 0 0 1 0 1 NADSYN1 chr11:71169590 5'GT 71169590 Upstream 12bp 35163 chr16 30198804 30198804 1 + G A rs143729497 30198805 + 30198785 30198825 41 GCCGCATGAGTGAGCGGCAGGTGGCGCTGTGGGACACAGTG GCCGCATGAGTGAGCGGCAAGTGGCGCTGTGGGACACAGTG < 41bp 0.550223410885708 0.75088132146167 NA NA prediction 0.401315821151925 Functional Gain - CORO1A ENSG00000102879 CDS Human protein_coding chr16:30198805 chr16:30198804 synonymous SNV . 0 20 hm7G_associated_SNPs_38208 0 0 1 0 1 CORO1A chr16:30198822 5'GT 30198822 Upstream 19bp 35164 chr16 460697 460697 1 + G A rs547888369 460698 + 460678 460718 41 TTGTGTGTTGCAGGACCACGGAGGGGTGATCGTGAACATCA TTGTGTGTTGCAGGACCACAGAGGGGTGATCGTGAACATCA < 41bp 0.551458535607265 0.752115101063926 NA NA prediction 0.401313130913321 Functional Gain - DECR2 ENSG00000242612 CDS Human protein_coding chr16:460698 chr16:460697 nonsynonymous SNV 0.864 4 20 hm7G_associated_SNPs_38209 0 0 0 0 2 DECR2 chr16:460691 3'AG 460691 Downstream 7bp 35165 chr16 460697 460697 1 + G A rs547888369 460698 + 460678 460718 41 TTGTGTGTTGCAGGACCACGGAGGGGTGATCGTGAACATCA TTGTGTGTTGCAGGACCACAGAGGGGTGATCGTGAACATCA < 41bp 0.551458535607265 0.752115101063926 NA NA prediction 0.401313130913321 Functional Gain - DECR2 ENSG00000242612 CDS Human protein_coding chr16:460698 chr16:460697 nonsynonymous SNV 0.864 4 20 hm7G_associated_SNPs_38209 0 0 0 0 2 DECR2 chr16:460784 5'GT 460784 Upstream 88bp 35166 chr19 49643082 49643082 1 + G A PRAD 49643083 + 49643063 49643103 41 GAAGATGGGGGACCCCCACGGGGAAGGTCAGCAGGGACAAG GAAGATGGGGGACCCCCACAGGGAAGGTCAGCAGGGACAAG < 41bp 0.546429504570247 0.747085381675868 NA NA prediction 0.401311754211243 Functional Gain - PPFIA3 ENSG00000177380 CDS Human protein_coding chr19:49643083 chr19:49643082 nonsynonymous SNV 0.923 0 20 hm7G_associated_SNPs_38212 0 0 0 0 1 PPFIA3 chr19:49643088 5'GT 49643088 Upstream 7bp 35167 chr19 15648407 15648407 1 + C T CESC 15648408 + 15648388 15648428 41 ACCGTCGCCTGCTGACACCCGCCTTCCACTTTGACATCCTG ACCGTCGCCTGCTGACACCTGCCTTCCACTTTGACATCCTG < 41bp 0.491439034581107 0.700655557706691 NA NA prediction 0.401311115413381 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15648408 chr19:15648407 synonymous SNV . 0 20 hm7G_associated_SNPs_38213 0 0 0 0 2 CYP4F22 chr19:15648346 3'AG 15648346 Downstream 62bp 35168 chr19 15648407 15648407 1 + C T CESC 15648408 + 15648388 15648428 41 ACCGTCGCCTGCTGACACCCGCCTTCCACTTTGACATCCTG ACCGTCGCCTGCTGACACCTGCCTTCCACTTTGACATCCTG < 41bp 0.491439034581107 0.700655557706691 NA NA prediction 0.401311115413381 Functional Gain - CYP4F22 ENSG00000171954 CDS Human protein_coding chr19:15648408 chr19:15648407 synonymous SNV . 0 20 hm7G_associated_SNPs_38213 0 0 0 0 2 CYP4F22 chr19:15648473 5'GT 15648473 Upstream 67bp 35169 chr20 60737838 60737838 1 + C T rs149403754 60737839 + 60737819 60737859 41 GTGTCCATGCAGCAGACGGCGCCTAACACGCTGCCCACCAC GTGTCCATGCAGCAGACGGTGCCTAACACGCTGCCCACCAC < 41bp 0.482423223431053 0.700653813059033 NA NA prediction 0.401307626118066 Functional Gain - SS18L1 ENSG00000184402 CDS Human protein_coding chr20:60737839 chr20:60737838 nonsynonymous SNV 0.050 2 20 hm7G_associated_SNPs_38214 0 0 1 0 1 SS18L1 chr20:60737808 3'AG 60737808 Downstream 31bp 35170 chr7 135377114 135377114 1 - G A COAD 135377113 - 135377093 135377133 41 GACCGTACTGTGGTTTACCCGGGAGCCTGGCTTTGTCCCTG GACCGTACTGTGGTTTACCTGGGAGCCTGGCTTTGTCCCTG < 41bp 0.550499220822328 0.751151269446275 NA NA prediction 0.401304097247895 Functional Gain - SLC13A4 ENSG00000164707 CDS Human protein_coding chr7:135377113 chr7:135377114 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38215 0 0 0 0 2 SLC13A4 chr7:135377071 5'GT 135377071 Upstream 44bp 35171 chr7 135377114 135377114 1 - G A COAD 135377113 - 135377093 135377133 41 GACCGTACTGTGGTTTACCCGGGAGCCTGGCTTTGTCCCTG GACCGTACTGTGGTTTACCTGGGAGCCTGGCTTTGTCCCTG < 41bp 0.550499220822328 0.751151269446275 NA NA prediction 0.401304097247895 Functional Gain - SLC13A4 ENSG00000164707 CDS Human protein_coding chr7:135377113 chr7:135377114 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38215 0 0 0 0 2 SLC13A4 chr7:135377172 3'AG 135377172 Downstream 59bp 35172 chr14 105344265 105344265 1 + C T STAD 105344266 + 105344246 105344286 41 CCGGACCAGAAGTACGTCACGCTGAAGCTCAACGATGTCAT CCGGACCAGAAGTACGTCATGCTGAAGCTCAACGATGTCAT < 41bp 0.551581214194911 0.752232139183743 NA NA prediction 0.401301849977664 Functional Gain - CEP170B ENSG00000099814 CDS Human protein_coding chr14:105344266 chr14:105344265 nonsynonymous SNV 0.984 4 20 hm7G_associated_SNPs_38216 0 0 1 0 1 CEP170B chr14:105344222 3'AG 105344222 Downstream 44bp 35173 chrX 13607702 13607702 1 + G A UCEC 13607703 + 13607683 13607723 41 ATCACGGGTTGTTAGCATCGGCACGTCAGCCTGGGGTCTGT ATCACGGGTTGTTAGCATCAGCACGTCAGCCTGGGGTCTGT < 41bp 0.53056871613381 0.731219565107264 NA NA prediction 0.401301697946908 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607703 chrX:13607702 synonymous SNV . 0 20 hm7G_associated_SNPs_38217 0 0 0 0 3 EGFL6 chrX:13607675 3'AG 13607675 Downstream 28bp 35174 chrX 13607702 13607702 1 + G A UCEC 13607703 + 13607683 13607723 41 ATCACGGGTTGTTAGCATCGGCACGTCAGCCTGGGGTCTGT ATCACGGGTTGTTAGCATCAGCACGTCAGCCTGGGGTCTGT < 41bp 0.53056871613381 0.731219565107264 NA NA prediction 0.401301697946908 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607703 chrX:13607702 synonymous SNV . 0 20 hm7G_associated_SNPs_38217 0 0 0 0 3 EGFL6 chrX:13607681 3'AG 13607681 Downstream 22bp 35175 chrX 13607702 13607702 1 + G A UCEC 13607703 + 13607683 13607723 41 ATCACGGGTTGTTAGCATCGGCACGTCAGCCTGGGGTCTGT ATCACGGGTTGTTAGCATCAGCACGTCAGCCTGGGGTCTGT < 41bp 0.53056871613381 0.731219565107264 NA NA prediction 0.401301697946908 Functional Gain - EGFL6 ENSG00000198759 CDS Human protein_coding chrX:13607703 chrX:13607702 synonymous SNV . 0 20 hm7G_associated_SNPs_38217 0 0 0 0 3 EGFL6 chrX:13607787 5'GT 13607787 Upstream 86bp 35176 chr16 1248648 1248648 1 + C T BLCA 1248649 + 1248629 1248669 41 GTCACTCTGCTGCTGGATACGCTGCCCATGCTCGGGAACGT GTCACTCTGCTGCTGGATATGCTGCCCATGCTCGGGAACGT < 41bp 0.540227855360743 0.740877611506539 NA NA prediction 0.401299512291593 Functional Gain - CACNA1H ENSG00000196557 CDS Human protein_coding chr16:1248649 chr16:1248648 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_38218 0 0 0 0 1 CACNA1H chr16:1248615 3'AG 1248615 Downstream 34bp 35177 chr14 21462197 21462197 1 + G A LIHC 21462198 + 21462178 21462218 41 ACAGATCAGCTGCCATGTTGGTTTTGGCAGAAAAACTACTG ACAGATCAGCTGCCATGTTAGTTTTGGCAGAAAAACTACTG < 41bp 0.498005798780112 0.700649645540258 NA NA prediction 0.401299291080516 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21462198 chr14:21462197 synonymous SNV . 0 20 hm7G_associated_SNPs_38219 0 0 1 0 2 METTL17 chr14:21462128 3'AG 21462128 Downstream 70bp 35178 chr14 21462197 21462197 1 + G A LIHC 21462198 + 21462178 21462218 41 ACAGATCAGCTGCCATGTTGGTTTTGGCAGAAAAACTACTG ACAGATCAGCTGCCATGTTAGTTTTGGCAGAAAAACTACTG < 41bp 0.498005798780112 0.700649645540258 NA NA prediction 0.401299291080516 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21462198 chr14:21462197 synonymous SNV . 0 20 hm7G_associated_SNPs_38219 0 0 1 0 2 METTL17 chr14:21462222 5'GT 21462222 Upstream 26bp 35179 chr19 3589857 3589857 1 + G A UCEC 3589858 + 3589838 3589878 41 TTTGAGGAGGAGGCATCTCGGAAGGTTGATGACCTGCTGGA TTTGAGGAGGAGGCATCTCAGAAGGTTGATGACCTGCTGGA < 41bp 0.503054114052685 0.703701954218291 NA NA prediction 0.401295680331212 Functional Gain - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589858 chr19:3589857 nonsynonymous SNV 0.172 0 20 hm7G_associated_SNPs_38221 0 0 0 0 2 GIPC3 chr19:3589829 3'AG 3589829 Downstream 29bp 35180 chr19 3589857 3589857 1 + G A UCEC 3589858 + 3589838 3589878 41 TTTGAGGAGGAGGCATCTCGGAAGGTTGATGACCTGCTGGA TTTGAGGAGGAGGCATCTCAGAAGGTTGATGACCTGCTGGA < 41bp 0.503054114052685 0.703701954218291 NA NA prediction 0.401295680331212 Functional Gain - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589858 chr19:3589857 nonsynonymous SNV 0.172 0 20 hm7G_associated_SNPs_38221 0 0 0 0 2 GIPC3 chr19:3589910 5'GT 3589910 Upstream 54bp 35181 chr9 104314043 104314043 1 + G T LUAD 104314044 + 104314024 104314064 41 CATTGGCCCAGGTCCGCAAGGAGTATGAAATGCTGAGGATA CATTGGCCCAGGTCCGCAATGAGTATGAAATGCTGAGGATA < 41bp 0.713613705535535 0.914260280204906 NA NA prediction 0.401293149338743 Functional Gain - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104314044 chr9:104314043 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38223 0 0 0 0 2 RNF20 chr9:104313966 3'AG 104313966 Downstream 78bp 35182 chr9 104314043 104314043 1 + G T LUAD 104314044 + 104314024 104314064 41 CATTGGCCCAGGTCCGCAAGGAGTATGAAATGCTGAGGATA CATTGGCCCAGGTCCGCAATGAGTATGAAATGCTGAGGATA < 41bp 0.713613705535535 0.914260280204906 NA NA prediction 0.401293149338743 Functional Gain - RNF20 ENSG00000155827 CDS Human protein_coding chr9:104314044 chr9:104314043 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38223 0 0 0 0 2 RNF20 chr9:104314101 5'GT 104314101 Upstream 59bp 35183 chr22 26743798 26743798 1 + G A COAD 26743799 + 26743779 26743819 41 CACCTACCAGTGTGACCCCGGCTATGACATCGTGGGGAGTG CACCTACCAGTGTGACCCCAGCTATGACATCGTGGGGAGTG < 41bp 0.521346521218952 0.721992712594253 NA NA prediction 0.401292382750603 Functional Gain - SEZ6L ENSG00000100095 CDS Human protein_coding chr22:26743799 chr22:26743798 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_38224 0 0 0 0 1 SEZ6L chr22:26743879 5'GT 26743879 Upstream 82bp 35184 chr7 129122719 129122719 1 + C T COAD 129122720 + 129122700 129122740 41 ATCGGCACCAATCTTAAAGCGGGCCCTCAAGGTCAAACAGG ATCGGCACCAATCTTAAAGTGGGCCCTCAAGGTCAAACAGG < 41bp 0.487316582351607 0.7006454779564 NA NA prediction 0.4012909559128 Functional Gain - STRIP2 ENSG00000128578 CDS Human protein_coding chr7:129122720 chr7:129122719 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38225 0 0 0 0 1 STRIP2 chr7:129122683 3'AG 129122683 Downstream 37bp 35185 chr1 9778814 9778814 1 + G A UCEC 9778815 + 9778795 9778835 41 GCAAGACGGTGTCCAGCTCGGAGGTGAGCGTGTGCTCGGAG GCAAGACGGTGTCCAGCTCAGAGGTGAGCGTGTGCTCGGAG < 41bp 0.546053837331145 0.746696967565591 NA NA prediction 0.401286260468892 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9778815 chr1:9778814 synonymous SNV . 0 20 hm7G_associated_SNPs_38227 0 0 0 0 1 PIK3CD chr1:9778752 3'AG 9778752 Downstream 63bp 35186 chr7 156961751 156961751 1 + C T COAD 156961752 + 156961732 156961772 41 TATTGTTTAGGAAGAAAGGCGAAGGTTGAAAAATGCAATAA TATTGTTTAGGAAGAAAGGTGAAGGTTGAAAAATGCAATAA < 41bp 0.51868858403366 0.71933159532673 NA NA prediction 0.401286022586141 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:156961752 chr7:156961751 stopgain 1.000 1 20 hm7G_associated_SNPs_38228 0 0 1 0 2 UBE3C chr7:156961742 3'AG 156961742 Downstream 10bp 35187 chr7 156961751 156961751 1 + C T COAD 156961752 + 156961732 156961772 41 TATTGTTTAGGAAGAAAGGCGAAGGTTGAAAAATGCAATAA TATTGTTTAGGAAGAAAGGTGAAGGTTGAAAAATGCAATAA < 41bp 0.51868858403366 0.71933159532673 NA NA prediction 0.401286022586141 Functional Gain - UBE3C ENSG00000009335 CDS Human protein_coding chr7:156961752 chr7:156961751 stopgain 1.000 1 20 hm7G_associated_SNPs_38228 0 0 1 0 2 UBE3C chr7:156961816 5'GT 156961816 Upstream 66bp 35188 chr5 67588130 67588130 1 + C T COAD 67588131 + 67588111 67588151 41 CTACTACTGTAGCCAACAACGGTATGAATAACAATATGTCC CTACTACTGTAGCCAACAATGGTATGAATAACAATATGTCC < 41bp 0.493299384214641 0.700640974739222 NA NA prediction 0.401281949478444 Functional Gain - PIK3R1 ENSG00000145675 CDS Human protein_coding chr5:67588131 chr5:67588130 synonymous SNV . 0 20 hm7G_associated_SNPs_38231 0 0 0 0 2 PIK3R1 chr5:67588087 3'AG 67588087 Downstream 44bp 35189 chr5 67588130 67588130 1 + C T COAD 67588131 + 67588111 67588151 41 CTACTACTGTAGCCAACAACGGTATGAATAACAATATGTCC CTACTACTGTAGCCAACAATGGTATGAATAACAATATGTCC < 41bp 0.493299384214641 0.700640974739222 NA NA prediction 0.401281949478444 Functional Gain - PIK3R1 ENSG00000145675 CDS Human protein_coding chr5:67588131 chr5:67588130 synonymous SNV . 0 20 hm7G_associated_SNPs_38231 0 0 0 0 2 PIK3R1 chr5:67588189 5'GT 67588189 Upstream 60bp 35190 chr1 65129452 65129452 1 + C T CESC 65129453 + 65129433 65129473 41 CAGCCAGCCAGAGACAAAGCGCATGGTAGAGCACTACACCG CAGCCAGCCAGAGACAAAGTGCATGGTAGAGCACTACACCG < 41bp 0.554870436670043 0.755511134312888 NA NA prediction 0.40128139528569 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65129453 chr1:65129452 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38232 0 0 0 0 2 CACHD1 chr1:65129378 3'AG 65129378 Downstream 75bp 35191 chr1 65129452 65129452 1 + C T CESC 65129453 + 65129433 65129473 41 CAGCCAGCCAGAGACAAAGCGCATGGTAGAGCACTACACCG CAGCCAGCCAGAGACAAAGTGCATGGTAGAGCACTACACCG < 41bp 0.554870436670043 0.755511134312888 NA NA prediction 0.40128139528569 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65129453 chr1:65129452 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38232 0 0 0 0 2 CACHD1 chr1:65129520 5'GT 65129520 Upstream 69bp 35192 chr17 34955450 34955450 1 + C T UCEC 34955451 + 34955431 34955471 41 GGGACTGAGGCAAGAGCTTCGGGAGGCCCAGACCCACATCC GGGACTGAGGCAAGAGCTTTGGGAGGCCCAGACCCACATCC < 41bp 0.540501792062729 0.741142392934488 NA NA prediction 0.401281201743518 Functional Gain - DHRS11 ENSG00000108272 CDS Human other chr17:34955451 chr17:34955450 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38233 0 0 1 0 1 DHRS11 chr17:34955479 5'GT 34955479 Upstream 30bp 35193 chr7 154738463 154738463 1 + C T UCEC 154738464 + 154738444 154738484 41 TTTCCTCCTGCACACTCTACGATTGCCTTCATAGTGGAAAG TTTCCTCCTGCACACTCTATGATTGCCTTCATAGTGGAAAG < 41bp 0.535971048238771 0.736610081005526 NA NA prediction 0.401278065533509 Functional Gain - PAXIP1 ENSG00000157212 CDS Human protein_coding chr7:154738464 chr7:154738463 nonsynonymous SNV 0.037 0 20 hm7G_associated_SNPs_38234 0 0 1 0 1 PAXIP1 chr7:154738501 5'GT 154738501 Upstream 39bp 35194 chr11 68216349 68216349 1 + C T KIRC 68216350 + 68216330 68216370 41 TGTGTGACAGCGACTACAGCGCCAGCCGCTGGAAGGCCAGC TGTGTGACAGCGACTACAGTGCCAGCCGCTGGAAGGCCAGC < 41bp 0.515147971801586 0.715783271946597 NA NA prediction 0.401270600290024 Functional Gain - LRP5 ENSG00000162337 CDS Human protein_coding chr11:68216350 chr11:68216349 synonymous SNV . 0 20 hm7G_associated_SNPs_38237 0 0 1 0 1 LRP5 chr11:68216277 3'AG 68216277 Downstream 73bp 35195 chr20 62837104 62837104 1 + G T UCEC 62837105 + 62837085 62837125 41 GAACTCTGGAGGGGGCCGAGGCTGAGACGTCAGGACAGGAC GAACTCTGGAGGGGGCCGATGCTGAGACGTCAGGACAGGAC < 41bp 0.719468529551545 0.920101321410642 NA NA prediction 0.401265583718195 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62837105 chr20:62837104 nonsynonymous SNV 0.643 3 20 hm7G_associated_SNPs_38238 0 0 0 0 1 MYT1 chr20:62837153 5'GT 62837153 Upstream 50bp 35196 chr1 150527952 150527952 1 + C T PAAD 150527953 + 150527933 150527973 41 CTGCCGGCCCCGTGGCTTCCGCTTCTATGTCCGTCACACTG CTGCCGGCCCCGTGGCTTCTGCTTCTATGTCCGTCACACTG < 41bp 0.484817683182437 0.700632428128909 NA NA prediction 0.401264856257818 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150527953 chr1:150527952 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38239 0 0 1 0 2 ADAMTSL4 chr1:150527905 3'AG 150527905 Downstream 48bp 35197 chr1 150527952 150527952 1 + C T PAAD 150527953 + 150527933 150527973 41 CTGCCGGCCCCGTGGCTTCCGCTTCTATGTCCGTCACACTG CTGCCGGCCCCGTGGCTTCTGCTTCTATGTCCGTCACACTG < 41bp 0.484817683182437 0.700632428128909 NA NA prediction 0.401264856257818 Functional Gain - ADAMTSL4 ENSG00000143382 CDS Human protein_coding chr1:150527953 chr1:150527952 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38239 0 0 1 0 2 ADAMTSL4 chr1:150528041 5'GT 150528041 Upstream 90bp 35198 chr5 76259283 76259283 1 + C T PRAD 76259284 + 76259264 76259304 41 TGCTACCCCTTTCATGGCCCGGGTGAGGTATTTCTTTGATT TGCTACCCCTTTCATGGCCTGGGTGAGGTATTTCTTTGATT < 41bp 0.504025408501339 0.704657834490606 NA NA prediction 0.401264851978534 Functional Gain - CRHBP ENSG00000145708 CDS Human protein_coding chr5:76259284 chr5:76259283 nonsynonymous SNV 0.631 1 20 hm7G_associated_SNPs_38240 0 0 0 0 1 CRHBP chr5:76259285 5'GT 76259285 Upstream 3bp 35199 chr19 35749960 35749960 1 + C T LUAD 35749961 + 35749941 35749981 41 AGGCCTACGCAGAGCTCATCGTCCTTGGTGAGTGGGCCTGG AGGCCTACGCAGAGCTCATTGTCCTTGGTGAGTGGGCCTGG < 41bp 0.503835240221398 0.704467597903044 NA NA prediction 0.401264715363292 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35749961 chr19:35749960 synonymous SNV . 0 20 hm7G_associated_SNPs_38241 0 0 1 0 1 LSR chr19:35749967 5'GT 35749967 Upstream 8bp 35200 chr12 88554506 88554506 1 + G T UCEC 88554507 + 88554487 88554527 41 GACAGTTTCTCCGTGGAAAGGGTAGCATTCCATTTTCTATG GACAGTTTCTCCGTGGAAATGGTAGCATTCCATTTTCTATG < 41bp 0.373940551641973 0.700631625770803 NA NA prediction 0.401263251541605 Functional Gain - TMTC3 ENSG00000139324 CDS Human protein_coding chr12:88554507 chr12:88554506 nonsynonymous SNV 0.999 1 20 hm7G_associated_SNPs_38242 0 0 1 3 1 TMTC3 chr12:88554456 3'AG 88554456 Downstream 51bp 35201 chr19 46823775 46823775 1 + C T UCEC 46823776 + 46823756 46823796 41 GCAGACCCATTCAGCGGGGCGCCCCCTCTCAGAAGGACACC GCAGACCCATTCAGCGGGGTGCCCCCTCTCAGAAGGACACC < 41bp 0.486781946760942 0.700627962687229 NA NA prediction 0.401255925374458 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46823776 chr19:46823775 synonymous SNV . 0 20 hm7G_associated_SNPs_38243 0 0 0 0 3 HIF3A chr19:46823700 3'AG 46823700 Downstream 76bp 35202 chr19 46823775 46823775 1 + C T UCEC 46823776 + 46823756 46823796 41 GCAGACCCATTCAGCGGGGCGCCCCCTCTCAGAAGGACACC GCAGACCCATTCAGCGGGGTGCCCCCTCTCAGAAGGACACC < 41bp 0.486781946760942 0.700627962687229 NA NA prediction 0.401255925374458 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46823776 chr19:46823775 synonymous SNV . 0 20 hm7G_associated_SNPs_38243 0 0 0 0 3 HIF3A chr19:46823704 3'AG 46823704 Downstream 72bp 35203 chr19 46823775 46823775 1 + C T UCEC 46823776 + 46823756 46823796 41 GCAGACCCATTCAGCGGGGCGCCCCCTCTCAGAAGGACACC GCAGACCCATTCAGCGGGGTGCCCCCTCTCAGAAGGACACC < 41bp 0.486781946760942 0.700627962687229 NA NA prediction 0.401255925374458 Functional Gain - HIF3A ENSG00000124440 CDS Human protein_coding chr19:46823776 chr19:46823775 synonymous SNV . 0 20 hm7G_associated_SNPs_38243 0 0 0 0 3 HIF3A chr19:46823818 5'GT 46823818 Upstream 44bp 35204 chr7 66660171 66660171 1 + C T rs140763959 66660172 + 66660152 66660192 41 CACAGGGCGTTACCTACTGCGGAGAAAGTTCAGCAAGCAGT CACAGGGCGTTACCTACTGTGGAGAAAGTTCAGCAAGCAGT < 41bp 0.543693817601778 0.744320907925248 NA NA prediction 0.40125418064694 Functional Gain - TYW1 ENSG00000198874 CDS Human protein_coding chr7:66660172 chr7:66660171 synonymous SNV . 0 20 hm7G_associated_SNPs_38244 0 0 0 0 1 TYW1 chr7:66660157 3'AG 66660157 Downstream 15bp 35205 chr19 36218124 36218124 1 + C T UCEC 36218125 + 36218105 36218145 41 AGAGCAAGATGATGCAGTGCGCACAGTGCGATCACTGGGTG AGAGCAAGATGATGCAGTGTGCACAGTGCGATCACTGGGTG < 41bp 0.542962898914771 0.743588583569724 NA NA prediction 0.401251369309907 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218125 chr19:36218124 synonymous SNV . 0 20 hm7G_associated_SNPs_38245 0 0 1 0 2 KMT2B chr19:36218057 3'AG 36218057 Downstream 68bp 35206 chr19 36218124 36218124 1 + C T UCEC 36218125 + 36218105 36218145 41 AGAGCAAGATGATGCAGTGCGCACAGTGCGATCACTGGGTG AGAGCAAGATGATGCAGTGTGCACAGTGCGATCACTGGGTG < 41bp 0.542962898914771 0.743588583569724 NA NA prediction 0.401251369309907 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36218125 chr19:36218124 synonymous SNV . 0 20 hm7G_associated_SNPs_38245 0 0 1 0 2 KMT2B chr19:36218170 5'GT 36218170 Upstream 47bp 35207 chr1 154313476 154313476 1 + C T BRCA 154313477 + 154313457 154313497 41 TACATCTTCTCCGACAAGACGGGCACCCTCACCCAGAACAT TACATCTTCTCCGACAAGATGGGCACCCTCACCCAGAACAT < 41bp 0.541185686394425 0.741809789666306 NA NA prediction 0.401248206543761 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154313477 chr1:154313476 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38247 0 0 1 0 1 ATP8B2 chr1:154313538 5'GT 154313538 Upstream 63bp 35208 chr9 35805937 35805937 1 + C T STAD 35805938 + 35805918 35805958 41 CCTGCAGGAGATAGCACTTCGCAGTGGTCCTTTCTACTTGG CCTGCAGGAGATAGCACTTTGCAGTGGTCCTTTCTACTTGG < 41bp 0.484471070978219 0.700621212605033 NA NA prediction 0.401242425210065 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35805938 chr9:35805937 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38248 0 0 0 0 1 NPR2 chr9:35805982 5'GT 35805982 Upstream 46bp 35209 chr7 73511478 73511478 1 + C T UCEC 73511479 + 73511459 73511499 41 GTGGGACCTTTATCGGTGACGGGGACACCTACACGCTGGTG GTGGGACCTTTATCGGTGATGGGGACACCTACACGCTGGTG < 41bp 0.528312482755324 0.728933604549523 NA NA prediction 0.401242243588398 Functional Gain - LIMK1 ENSG00000106683 CDS Human protein_coding chr7:73511479 chr7:73511478 synonymous SNV . 0 20 hm7G_associated_SNPs_38249 0 0 1 0 1 LIMK1 chr7:73511519 5'GT 73511519 Upstream 42bp 35210 chr10 88917836 88917836 1 + C T LUSC 88917837 + 88917817 88917857 41 ATGAGGACCAATGGATTGGCGAGACAGTACTACAATCAACA ATGAGGACCAATGGATTGGTGAGACAGTACTACAATCAACA < 41bp 0.52476426633934 0.725385212173849 NA NA prediction 0.401241891669018 Functional Gain - FAM35A ENSG00000122376 CDS Human protein_coding chr10:88917837 chr10:88917836 synonymous SNV . 0 20 hm7G_associated_SNPs_38250 0 0 1 0 1 FAM35A chr10:88917912 5'GT 88917912 Upstream 77bp 35211 chr10 133946851 133946851 1 + C T BRCA 133946852 + 133946832 133946872 41 TTAAAGACAGAGCAGTCTTCGTGCTGGAGAGAGAGTTAGGG TTAAAGACAGAGCAGTCTTTGTGCTGGAGAGAGAGTTAGGG < 41bp 0.519735643572237 0.720356423892285 NA NA prediction 0.401241560640096 Functional Gain - JAKMIP3 ENSG00000188385 CDS Human protein_coding chr10:133946852 chr10:133946851 synonymous SNV . 0 20 hm7G_associated_SNPs_38251 0 0 0 0 1 JAKMIP3 chr10:133946816 3'AG 133946816 Downstream 36bp 35212 chr8 28837637 28837637 1 + C T UCEC 28837638 + 28837618 28837658 41 CAAAGCCTTTCTTGCCAATCGGAGGATTTCCCAAGCAGTTG CAAAGCCTTTCTTGCCAATTGGAGGATTTCCCAAGCAGTTG < 41bp 0.492196886646868 0.700620063580933 NA NA prediction 0.401240127161866 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28837638 chr8:28837637 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_38252 0 0 1 0 2 HMBOX1 chr8:28837588 3'AG 28837588 Downstream 50bp 35213 chr8 28837637 28837637 1 + C T UCEC 28837638 + 28837618 28837658 41 CAAAGCCTTTCTTGCCAATCGGAGGATTTCCCAAGCAGTTG CAAAGCCTTTCTTGCCAATTGGAGGATTTCCCAAGCAGTTG < 41bp 0.492196886646868 0.700620063580933 NA NA prediction 0.401240127161866 Functional Gain - HMBOX1 ENSG00000147421 CDS Human protein_coding chr8:28837638 chr8:28837637 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_38252 0 0 1 0 2 HMBOX1 chr8:28837673 5'GT 28837673 Upstream 37bp 35214 chr17 60679466 60679466 1 + C T LUAD 60679467 + 60679447 60679487 41 ATTACAGATTTTGGTCTTTCGAAGATCATGGATGATGATAG ATTACAGATTTTGGTCTTTTGAAGATCATGGATGATGATAG < 41bp 0.545052241788824 0.745671974371638 NA NA prediction 0.401239465165627 Functional Gain - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60679467 chr17:60679466 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38253 0 0 0 0 2 TLK2 chr17:60679403 3'AG 60679403 Downstream 64bp 35215 chr17 60679466 60679466 1 + C T LUAD 60679467 + 60679447 60679487 41 ATTACAGATTTTGGTCTTTCGAAGATCATGGATGATGATAG ATTACAGATTTTGGTCTTTTGAAGATCATGGATGATGATAG < 41bp 0.545052241788824 0.745671974371638 NA NA prediction 0.401239465165627 Functional Gain - TLK2 ENSG00000146872 CDS Human protein_coding chr17:60679467 chr17:60679466 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38253 0 0 0 0 2 TLK2 chr17:60679541 5'GT 60679541 Upstream 76bp 35216 chr9 34655630 34655630 1 + C T UCEC 34655631 + 34655611 34655651 41 ATGGGCAGCCAGGCAGGTCCGTGAAGCTGTGTTGTCCTGGA ATGGGCAGCCAGGCAGGTCTGTGAAGCTGTGTTGTCCTGGA < 41bp 0.505835534175875 0.706454309564231 NA NA prediction 0.401237550776712 Functional Gain - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34655631 chr9:34655630 synonymous SNV . 0 20 hm7G_associated_SNPs_38255 0 0 1 0 2 IL11RA chr9:34655602 3'AG 34655602 Downstream 29bp 35217 chr9 34655630 34655630 1 + C T UCEC 34655631 + 34655611 34655651 41 ATGGGCAGCCAGGCAGGTCCGTGAAGCTGTGTTGTCCTGGA ATGGGCAGCCAGGCAGGTCTGTGAAGCTGTGTTGTCCTGGA < 41bp 0.505835534175875 0.706454309564231 NA NA prediction 0.401237550776712 Functional Gain - IL11RA ENSG00000137070;ENSG00000258728 CDS Human other chr9:34655631 chr9:34655630 synonymous SNV . 0 20 hm7G_associated_SNPs_38255 0 0 1 0 2 IL11RA chr9:34655662 5'GT 34655662 Upstream 33bp 35218 chr17 26711462 26711462 1 + C T UCEC 26711463 + 26711443 26711483 41 AGTCGGCGCTGGCCAAGCGCGCGCTGCGCCTGCTGGGCGAG AGTCGGCGCTGGCCAAGCGTGCGCTGCGCCTGCTGGGCGAG < 41bp 0.549367162907858 0.749984406357309 NA NA prediction 0.401234486898901 Functional Gain - SARM1 ENSG00000004139 CDS Human protein_coding chr17:26711463 chr17:26711462 synonymous SNV . 0 20 hm7G_associated_SNPs_38256 0 0 0 0 1 SARM1 chr17:26711376 3'AG 26711376 Downstream 87bp 35219 chr6 39866704 39866704 1 + G A PAAD 39866705 + 39866685 39866725 41 TCAGGAGGGGCCTGAGAGCGGTGGAGGTGGTGAGTACCTTG TCAGGAGGGGCCTGAGAGCAGTGGAGGTGGTGAGTACCTTG < 41bp 0.512706347136523 0.713323573519894 NA NA prediction 0.401234452766743 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39866705 chr6:39866704 synonymous SNV . 0 20 hm7G_associated_SNPs_38257 0 0 0 0 2 DAAM2 chr6:39866653 3'AG 39866653 Downstream 52bp 35220 chr6 39866704 39866704 1 + G A PAAD 39866705 + 39866685 39866725 41 TCAGGAGGGGCCTGAGAGCGGTGGAGGTGGTGAGTACCTTG TCAGGAGGGGCCTGAGAGCAGTGGAGGTGGTGAGTACCTTG < 41bp 0.512706347136523 0.713323573519894 NA NA prediction 0.401234452766743 Functional Gain - DAAM2 ENSG00000146122 CDS Human protein_coding chr6:39866705 chr6:39866704 synonymous SNV . 0 20 hm7G_associated_SNPs_38257 0 0 0 0 2 DAAM2 chr6:39866713 5'GT 39866713 Upstream 10bp 35221 chr20 61296364 61296364 1 - C T rs145175877 61296363 - 61296343 61296383 41 GGCTGAACGTGGACATGCCGGTGATGAGAGTGGCCTCGGTG GGCTGAACGTGGACATGCCAGTGATGAGAGTGGCCTCGGTG < 41bp 0.53062710679961 0.731243901133733 NA NA prediction 0.401233588668247 Functional Gain - SLCO4A1 ENSG00000101187 CDS Human antisense chr20:61296363 chr20:61296364 synonymous SNV . 0 20 hm7G_associated_SNPs_38259 0 0 0 0 1 SLCO4A1-AS1 chr20:61296276 5'GT 61296276 Upstream 89bp 35222 chr9 138415823 138415823 1 + G A SKCM 138415824 + 138415804 138415844 41 ACGGGAAGCCGGTCCGAGGGGTGAAGCTCGTGGGTGGGTCC ACGGGAAGCCGGTCCGAGGAGTGAAGCTCGTGGGTGGGTCC < 41bp 0.482138950350365 0.700614401301746 NA NA prediction 0.401228802603493 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415824 chr9:138415823 synonymous SNV . 0 20 hm7G_associated_SNPs_38261 0 0 0 0 3 LCN1 chr9:138415726 3'AG 138415726 Downstream 98bp 35223 chr9 138415823 138415823 1 + G A SKCM 138415824 + 138415804 138415844 41 ACGGGAAGCCGGTCCGAGGGGTGAAGCTCGTGGGTGGGTCC ACGGGAAGCCGGTCCGAGGAGTGAAGCTCGTGGGTGGGTCC < 41bp 0.482138950350365 0.700614401301746 NA NA prediction 0.401228802603493 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415824 chr9:138415823 synonymous SNV . 0 20 hm7G_associated_SNPs_38261 0 0 0 0 3 LCN1 chr9:138415823 5'GT 138415823 Upstream 1bp 35224 chr9 138415823 138415823 1 + G A SKCM 138415824 + 138415804 138415844 41 ACGGGAAGCCGGTCCGAGGGGTGAAGCTCGTGGGTGGGTCC ACGGGAAGCCGGTCCGAGGAGTGAAGCTCGTGGGTGGGTCC < 41bp 0.482138950350365 0.700614401301746 NA NA prediction 0.401228802603493 Functional Gain - LCN1 ENSG00000160349 CDS Human protein_coding chr9:138415824 chr9:138415823 synonymous SNV . 0 20 hm7G_associated_SNPs_38261 0 0 0 0 3 LCN1 chr9:138415836 5'GT 138415836 Upstream 14bp 35225 chr1 114498233 114498233 1 + C T UCEC 114498234 + 114498214 114498254 41 AATAAAATCAAAAGAAGCTCGGAAGTACATTTTTAATTGCT AATAAAATCAAAAGAAGCTTGGAAGTACATTTTTAATTGCT < 41bp 0.491754607983218 0.700614094849288 NA NA prediction 0.401228189698577 Functional Gain - HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114498234 chr1:114498233 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38262 0 0 1 0 2 HIPK1 chr1:114498185 3'AG 114498185 Downstream 49bp 35226 chr1 114498233 114498233 1 + C T UCEC 114498234 + 114498214 114498254 41 AATAAAATCAAAAGAAGCTCGGAAGTACATTTTTAATTGCT AATAAAATCAAAAGAAGCTTGGAAGTACATTTTTAATTGCT < 41bp 0.491754607983218 0.700614094849288 NA NA prediction 0.401228189698577 Functional Gain - HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114498234 chr1:114498233 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38262 0 0 1 0 2 HIPK1 chr1:114498271 5'GT 114498271 Upstream 39bp 35227 chr17 73748374 73748374 1 + G A STAD 73748375 + 73748355 73748395 41 GAAGGCGCGCAACGGGGCCGGCTGGGGGCCTGAGCGGGAGG GAAGGCGCGCAACGGGGCCAGCTGGGGGCCTGAGCGGGAGG < 41bp 0.579319016627757 0.779932773148309 NA NA prediction 0.401227513041104 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73748375 chr17:73748374 nonsynonymous SNV 0.759 4 20 hm7G_associated_SNPs_38263 0 0 0 0 1 ITGB4 chr17:73748437 5'GT 73748437 Upstream 64bp 35228 chr11 76922261 76922261 1 + C T COAD 76922262 + 76922242 76922282 41 GAGGTGCTGCAGCTGGGGGCGCTGATCTACAGGGTCAAGTT GAGGTGCTGCAGCTGGGGGTGCTGATCTACAGGGTCAAGTT < 41bp 0.487535067909867 0.700613511124917 NA NA prediction 0.401227022249834 Functional Gain - MYO7A ENSG00000137474 CDS Human protein_coding chr11:76922262 chr11:76922261 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_38264 0 0 0 6 1 MYO7A chr11:76922197 3'AG 76922197 Downstream 65bp 35229 chr19 36350480 36350480 1 + G A HNSC 36350481 + 36350461 36350501 41 ACCTTTGTCTGCCGGGCCCGGAGCCAGGCCCTGCCCACAGG ACCTTTGTCTGCCGGGCCCAGAGCCAGGCCCTGCCCACAGG < 41bp 0.553014939747157 0.753626268256779 NA NA prediction 0.401222657019244 Functional Gain - KIRREL2 ENSG00000126259 CDS Human protein_coding chr19:36350481 chr19:36350480 nonsynonymous SNV 0.081 1 20 hm7G_associated_SNPs_38265 0 0 0 0 1 KIRREL2 chr19:36350383 3'AG 36350383 Downstream 98bp 35230 chr7 75511532 75511532 1 + C T UCEC 75511533 + 75511513 75511553 41 CTTTCCTCAGTAATGTCTGCGGGCTGTCCATCGGGCTGGCC CTTTCCTCAGTAATGTCTGTGGGCTGTCCATCGGGCTGGCC < 41bp 0.559223496764419 0.759833523650578 NA NA prediction 0.401220053772319 Functional Gain - RHBDD2 ENSG00000005486 CDS Human protein_coding chr7:75511533 chr7:75511532 synonymous SNV . 0 20 hm7G_associated_SNPs_38266 0 0 1 0 1 RHBDD2 chr7:75511554 5'GT 75511554 Upstream 23bp 35231 chr10 4873008 4873008 1 + C T GBM 4873009 + 4872989 4873029 41 CAAGGAAGGCGCTGTAAGACGGGAGGATCTGTTCATTGCCA CAAGGAAGGCGCTGTAAGATGGGAGGATCTGTTCATTGCCA < 41bp 0.510650576109426 0.711259988989841 NA NA prediction 0.401218825760831 Functional Gain - AKR1E2 ENSG00000165568 CDS Human protein_coding chr10:4873009 chr10:4873008 nonsynonymous SNV 0.021 4 20 hm7G_associated_SNPs_38267 0 0 0 1 1 AKR1E2 chr10:4873034 5'GT 4873034 Upstream 27bp 35232 chr11 56950108 56950108 1 + G A SKCM 56950109 + 56950089 56950129 41 GGGTGTGTGGCTGCACCATGGAACCCCTGCTGAAGTGGCTG GGGTGTGTGGCTGCACCATAGAACCCCTGCTGAAGTGGCTG < 41bp 0.489948406003944 0.700609344230768 NA NA prediction 0.401218688461536 Functional Gain - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56950109 chr11:56950108 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_38268 0 0 0 0 1 LRRC55 chr11:56950157 5'GT 56950157 Upstream 50bp 35233 chr5 133473797 133473797 1 + C T BRCA 133473798 + 133473778 133473818 41 TCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACAT TCCCCCAACTCTCTCTCTATGAACATTTCAACAGCCCACAT < 41bp 0.543167585855658 0.743774706245122 NA NA prediction 0.401214240778927 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133473798 chr5:133473797 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_38269 0 0 1 0 2 TCF7 chr5:133473750 3'AG 133473750 Downstream 48bp 35234 chr5 133473797 133473797 1 + C T BRCA 133473798 + 133473778 133473818 41 TCCCCCAACTCTCTCTCTACGAACATTTCAACAGCCCACAT TCCCCCAACTCTCTCTCTATGAACATTTCAACAGCCCACAT < 41bp 0.543167585855658 0.743774706245122 NA NA prediction 0.401214240778927 Functional Gain - TCF7 ENSG00000081059 CDS Human protein_coding chr5:133473798 chr5:133473797 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_38269 0 0 1 0 2 TCF7 chr5:133473855 5'GT 133473855 Upstream 59bp 35235 chr2 131116497 131116497 1 + G A HNSC 131116498 + 131116478 131116518 41 CGTGTGCTCCACCGTGGCCGGCAGTCGGCCAGAGAACGTGA CGTGTGCTCCACCGTGGCCAGCAGTCGGCCAGAGAACGTGA < 41bp 0.606834625176032 0.807440591120873 NA NA prediction 0.401211931889681 Functional Gain - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131116498 chr2:131116497 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_38270 0 0 1 0 2 PTPN18 chr2:131116440 3'AG 131116440 Downstream 58bp 35236 chr2 131116497 131116497 1 + G A HNSC 131116498 + 131116478 131116518 41 CGTGTGCTCCACCGTGGCCGGCAGTCGGCCAGAGAACGTGA CGTGTGCTCCACCGTGGCCAGCAGTCGGCCAGAGAACGTGA < 41bp 0.606834625176032 0.807440591120873 NA NA prediction 0.401211931889681 Functional Gain - PTPN18 ENSG00000072135 CDS Human protein_coding chr2:131116498 chr2:131116497 nonsynonymous SNV 0.008 3 20 hm7G_associated_SNPs_38270 0 0 1 0 2 PTPN18 chr2:131116548 5'GT 131116548 Upstream 52bp 35237 chr3 178917488 178917488 1 + C T rs115746478 178917489 + 178917469 178917509 41 TTATTAAAGGTTTTGCTATCGGCATGCCAGTGTGTGAATTT TTATTAAAGGTTTTGCTATTGGCATGCCAGTGTGTGAATTT < 41bp 0.525376928204999 0.725980953780759 NA NA prediction 0.401208051151521 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178917489 chr3:178917488 synonymous SNV . 0 20 hm7G_associated_SNPs_38271 1 0 0 0 1 PIK3CA chr3:178917478 3'AG 178917478 Downstream 11bp 35238 chr12 122492873 122492873 1 + G A UCEC 122492874 + 122492854 122492894 41 AGGGGCAGCCAGATCGGCCGGGAGCCCATTGGGTTGTCGGG AGGGGCAGCCAGATCGGCCAGGAGCCCATTGGGTTGTCGGG < 41bp 0.57046502030863 0.77106859364547 NA NA prediction 0.401207146673681 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122492874 chr12:122492873 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_38272 0 0 1 0 1 BCL7A chr12:122492895 5'GT 122492895 Upstream 23bp 35239 chr17 40456360 40456360 1 + C T COAD 40456361 + 40456341 40456381 41 ACCCCCCTCTCCTTTGCAGCGAGTGCAGTGGTGAGATCCTG ACCCCCCTCTCCTTTGCAGTGAGTGCAGTGGTGAGATCCTG < 41bp 0.545239912746953 0.745842844040168 NA NA prediction 0.40120586258643 Functional Gain - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40456361 chr17:40456360 synonymous SNV . 0 20 hm7G_associated_SNPs_38273 0 0 1 0 2 STAT5A chr17:40456360 3'AG 40456360 Downstream 1bp 35240 chr17 40456360 40456360 1 + C T COAD 40456361 + 40456341 40456381 41 ACCCCCCTCTCCTTTGCAGCGAGTGCAGTGGTGAGATCCTG ACCCCCCTCTCCTTTGCAGTGAGTGCAGTGGTGAGATCCTG < 41bp 0.545239912746953 0.745842844040168 NA NA prediction 0.40120586258643 Functional Gain - STAT5A ENSG00000126561 CDS Human protein_coding chr17:40456361 chr17:40456360 synonymous SNV . 0 20 hm7G_associated_SNPs_38273 0 0 1 0 2 STAT5A chr17:40456447 5'GT 40456447 Upstream 88bp 35241 chr17 80545096 80545096 1 + C T STAD 80545097 + 80545077 80545117 41 TAAAAACTGTAACACAAAACGGCACTCACGTGGCATCAGTC TAAAAACTGTAACACAAAATGGCACTCACGTGGCATCAGTC < 41bp 0.544624460262235 0.745227154279168 NA NA prediction 0.401205388033865 Functional Gain - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80545097 chr17:80545096 synonymous SNV . 0 20 hm7G_associated_SNPs_38274 0 0 1 0 1 FOXK2 chr17:80545148 5'GT 80545148 Upstream 53bp 35242 chr1 65130274 65130274 1 + C T BLCA 65130275 + 65130255 65130295 41 CCTGAACACTTACATTGTCCGCCGTTACATAGCAACACCCA CCTGAACACTTACATTGTCTGCCGTTACATAGCAACACCCA < 41bp 0.555732381350912 0.756333585656598 NA NA prediction 0.401202408611373 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65130275 chr1:65130274 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38276 0 0 1 0 2 CACHD1 chr1:65130181 3'AG 65130181 Downstream 94bp 35243 chr1 65130274 65130274 1 + C T BLCA 65130275 + 65130255 65130295 41 CCTGAACACTTACATTGTCCGCCGTTACATAGCAACACCCA CCTGAACACTTACATTGTCTGCCGTTACATAGCAACACCCA < 41bp 0.555732381350912 0.756333585656598 NA NA prediction 0.401202408611373 Functional Gain - CACHD1 ENSG00000158966 CDS Human protein_coding chr1:65130275 chr1:65130274 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38276 0 0 1 0 2 CACHD1 chr1:65130362 5'GT 65130362 Upstream 89bp 35244 chrX 47045478 47045478 1 + G A SKCM 47045479 + 47045459 47045499 41 TTCAGCAAATGAAGTACCGGGACCGTGCAGCTGAACGCAGA TTCAGCAAATGAAGTACCGAGACCGTGCAGCTGAACGCAGA < 41bp 0.491004414108607 0.70059778248481 NA NA prediction 0.401195564969619 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47045479 chrX:47045478 synonymous SNV . 0 20 hm7G_associated_SNPs_38281 0 0 1 0 2 RBM10 chrX:47045464 3'AG 47045464 Downstream 15bp 35245 chrX 47045478 47045478 1 + G A SKCM 47045479 + 47045459 47045499 41 TTCAGCAAATGAAGTACCGGGACCGTGCAGCTGAACGCAGA TTCAGCAAATGAAGTACCGAGACCGTGCAGCTGAACGCAGA < 41bp 0.491004414108607 0.70059778248481 NA NA prediction 0.401195564969619 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47045479 chrX:47045478 synonymous SNV . 0 20 hm7G_associated_SNPs_38281 0 0 1 0 2 RBM10 chrX:47045570 5'GT 47045570 Upstream 93bp 35246 chr10 43613912 43613912 1 + G A LUSC 43613913 + 43613893 43613933 41 ATGTCATCAAATTGTATGGGGCCTGCAGCCAGGATGGTAAG ATGTCATCAAATTGTATGGAGCCTGCAGCCAGGATGGTAAG < 41bp 0.552153698033442 0.752751072977827 NA NA prediction 0.401194749888768 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43613913 chr10:43613912 synonymous SNV . 0 20 hm7G_associated_SNPs_38282 0 0 0 0 2 RET chr10:43613821 3'AG 43613821 Downstream 92bp 35247 chr10 43613912 43613912 1 + G A LUSC 43613913 + 43613893 43613933 41 ATGTCATCAAATTGTATGGGGCCTGCAGCCAGGATGGTAAG ATGTCATCAAATTGTATGGAGCCTGCAGCCAGGATGGTAAG < 41bp 0.552153698033442 0.752751072977827 NA NA prediction 0.401194749888768 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43613913 chr10:43613912 synonymous SNV . 0 20 hm7G_associated_SNPs_38282 0 0 0 0 2 RET chr10:43613928 5'GT 43613928 Upstream 17bp 35248 chr15 42686523 42686523 1 + G A COAD 42686524 + 42686504 42686544 41 GGGCCAGGTGGAGTGGAACGGTTCTTGGAGTGATAGGTAGG GGGCCAGGTGGAGTGGAACAGTTCTTGGAGTGATAGGTAGG < 41bp 0.498918163710665 0.700595549484562 NA NA prediction 0.401191098969125 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42686524 chr15:42686523 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_38284 0 0 0 0 2 CAPN3 chr15:42686454 3'AG 42686454 Downstream 70bp 35249 chr15 42686523 42686523 1 + G A COAD 42686524 + 42686504 42686544 41 GGGCCAGGTGGAGTGGAACGGTTCTTGGAGTGATAGGTAGG GGGCCAGGTGGAGTGGAACAGTTCTTGGAGTGATAGGTAGG < 41bp 0.498918163710665 0.700595549484562 NA NA prediction 0.401191098969125 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42686524 chr15:42686523 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_38284 0 0 0 0 2 CAPN3 chr15:42686539 5'GT 42686539 Upstream 17bp 35250 chr9 135919169 135919169 1 + C T UCEC 135919170 + 135919150 135919190 41 GAAGCAGGCGGCAAGCATACGTCAATGTATGACAAGGTGCT GAAGCAGGCGGCAAGCATATGTCAATGTATGACAAGGTGCT < 41bp 0.506803405698533 0.707398741319435 NA NA prediction 0.401190671241804 Functional Gain - GTF3C5 ENSG00000148308 CDS Human protein_coding chr9:135919170 chr9:135919169 nonsynonymous SNV 0.160 0 20 hm7G_associated_SNPs_38285 0 0 1 0 1 GTF3C5 chr9:135919115 3'AG 135919115 Downstream 55bp 35251 chr18 12420448 12420448 1 + C T DLBC 12420449 + 12420429 12420469 41 CGGCCGCCTGCACAGCTTGCGCCTGCTCAGCACCGAGTGGG CGGCCGCCTGCACAGCTTGTGCCTGCTCAGCACCGAGTGGG < 41bp 0.541787674309499 0.742382995237342 NA NA prediction 0.401190641855687 Functional Gain - PRELID3A ENSG00000141391 CDS Human protein_coding chr18:12420449 chr18:12420448 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_38286 0 0 0 0 1 PRELID3A chr18:12420492 5'GT 12420492 Upstream 45bp 35252 chr2 242149012 242149012 1 + C T CESC 242149013 + 242148993 242149033 41 CCCTGAGAGGAGCCGCGCGCGCCGCATGCTGGCCGGCTCTG CCCTGAGAGGAGCCGCGCGTGCCGCATGCTGGCCGGCTCTG < 41bp 0.543032220323538 0.743627472610896 NA NA prediction 0.401190504574716 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242149013 chr2:242149012 nonsynonymous SNV 0.044 1 20 hm7G_associated_SNPs_38288 0 0 0 0 2 ANO7 chr2:242148913 3'AG 242148913 Downstream 100bp 35253 chr2 242149012 242149012 1 + C T CESC 242149013 + 242148993 242149033 41 CCCTGAGAGGAGCCGCGCGCGCCGCATGCTGGCCGGCTCTG CCCTGAGAGGAGCCGCGCGTGCCGCATGCTGGCCGGCTCTG < 41bp 0.543032220323538 0.743627472610896 NA NA prediction 0.401190504574716 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242149013 chr2:242149012 nonsynonymous SNV 0.044 1 20 hm7G_associated_SNPs_38288 0 0 0 0 2 ANO7 chr2:242149050 5'GT 242149050 Upstream 39bp 35254 chr1 40229424 40229424 1 + C T PAAD 40229425 + 40229405 40229445 41 GCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGT GCTGACGTAGAGCTCGTGCTGACGGCAGACCTGCCGGCCGT < 41bp 0.530882597159144 0.731476515656157 NA NA prediction 0.401187836994026 Functional Gain - BMP8B ENSG00000116985 CDS Human other chr1:40229425 chr1:40229424 nonsynonymous SNV 0.806 4 20 hm7G_associated_SNPs_38289 0 0 0 0 1 PPIE chr1:40229361 3'AG 40229361 Downstream 64bp 35255 chr17 62530784 62530784 1 + C T UCEC 62530785 + 62530765 62530805 41 ACAGCAAATCGTTCGTGCTCGAAAATATTATGATGATTATA ACAGCAAATCGTTCGTGCTTGAAAATATTATGATGATTATA < 41bp 0.504434045779315 0.70502732657871 NA NA prediction 0.40118656159879 Functional Gain - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62530785 chr17:62530784 stopgain 0.329 1 20 hm7G_associated_SNPs_38290 0 0 1 0 2 CEP95 chr17:62530703 3'AG 62530703 Downstream 82bp 35256 chr17 62530784 62530784 1 + C T UCEC 62530785 + 62530765 62530805 41 ACAGCAAATCGTTCGTGCTCGAAAATATTATGATGATTATA ACAGCAAATCGTTCGTGCTTGAAAATATTATGATGATTATA < 41bp 0.504434045779315 0.70502732657871 NA NA prediction 0.40118656159879 Functional Gain - CEP95 ENSG00000258890 CDS Human protein_coding chr17:62530785 chr17:62530784 stopgain 0.329 1 20 hm7G_associated_SNPs_38290 0 0 1 0 2 CEP95 chr17:62530855 5'GT 62530855 Upstream 72bp 35257 chr22 25023512 25023512 1 + C T KICH 25023513 + 25023493 25023533 41 AGTTCTACACGCCGGATGACGGGGGCACTGCTCACCTGTCT AGTTCTACACGCCGGATGATGGGGGCACTGCTCACCTGTCT < 41bp 0.489378815645959 0.700591227896231 NA NA prediction 0.401182455792461 Functional Gain - GGT1 ENSG00000100031 CDS Human protein_coding chr22:25023513 chr22:25023512 synonymous SNV . 0 20 hm7G_associated_SNPs_38292 0 0 0 0 1 GGT1 chr22:25023586 5'GT 25023586 Upstream 75bp 35258 chr19 49100157 49100157 1 + C T UCEC 49100158 + 49100138 49100178 41 GCCTGCTGGACCACCGTCGCGGGGCCTTCCTCCGGAAAGGT GCCTGCTGGACCACCGTCGTGGGGCCTTCCTCCGGAAAGGT < 41bp 0.546947894180472 0.747539087176789 NA NA prediction 0.401182385992634 Functional Gain - SULT2B1 ENSG00000088002 CDS Human protein_coding chr19:49100158 chr19:49100157 synonymous SNV . 0 20 hm7G_associated_SNPs_38293 0 0 1 0 1 SULT2B1 chr19:49100176 5'GT 49100176 Upstream 20bp 35259 chr15 42139703 42139703 1 + C T rs141583854 42139704 + 42139684 42139724 41 TCTGGTCAGCGACTCCTTCCGGGAGTACTCGGCCCCTGGTG TCTGGTCAGCGACTCCTTCTGGGAGTACTCGGCCCCTGGTG < 41bp 0.51532229205046 0.715912081041555 NA NA prediction 0.40117957798219 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42139704 chr15:42139703 nonsynonymous SNV 0.347 2 20 hm7G_associated_SNPs_38297 0 0 0 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42139721 5'GT 42139721 Upstream 19bp 35260 chr22 32257381 32257381 1 + C T DLBC 32257382 + 32257362 32257402 41 CTTCTTTATGGAGTTTGTCCGCAGCCCACGCACAGCATCGT CTTCTTTATGGAGTTTGTCTGCAGCCCACGCACAGCATCGT < 41bp 0.51912160701087 0.719709569211864 NA NA prediction 0.40117592440199 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257382 chr22:32257381 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38301 0 0 0 0 2 DEPDC5 chr22:32257354 3'AG 32257354 Downstream 28bp 35261 chr22 32257381 32257381 1 + C T DLBC 32257382 + 32257362 32257402 41 CTTCTTTATGGAGTTTGTCCGCAGCCCACGCACAGCATCGT CTTCTTTATGGAGTTTGTCTGCAGCCCACGCACAGCATCGT < 41bp 0.51912160701087 0.719709569211864 NA NA prediction 0.40117592440199 Functional Gain - DEPDC5 ENSG00000100150 CDS Human protein_coding chr22:32257382 chr22:32257381 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38301 0 0 0 0 2 DEPDC5 chr22:32257419 5'GT 32257419 Upstream 39bp 35262 chr19 8121095 8121095 1 + C T rs76328169 8121096 + 8121076 8121116 41 TGGGTGGGCTGTGCTCCGGCGCGCCTGGACTTACCGGATCC TGGGTGGGCTGTGCTCCGGTGCGCCTGGACTTACCGGATCC < 41bp 0.546299231977801 0.746887144592119 NA NA prediction 0.401175825228636 Functional Gain - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121096 chr19:8121095 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_38302 0 0 0 0 2 CCL25 chr19:8121036 3'AG 8121036 Downstream 60bp 35263 chr19 8121095 8121095 1 + C T rs76328169 8121096 + 8121076 8121116 41 TGGGTGGGCTGTGCTCCGGCGCGCCTGGACTTACCGGATCC TGGGTGGGCTGTGCTCCGGTGCGCCTGGACTTACCGGATCC < 41bp 0.546299231977801 0.746887144592119 NA NA prediction 0.401175825228636 Functional Gain - CCL25 ENSG00000131142 CDS Human protein_coding chr19:8121096 chr19:8121095 nonsynonymous SNV 0.001 2 20 hm7G_associated_SNPs_38302 0 0 0 0 2 CCL25 chr19:8121153 5'GT 8121153 Upstream 59bp 35264 chr1 11562134 11562134 1 + C T HNSC 11562135 + 11562115 11562155 41 GGCATGGGCCAGGACCTGGCGGACATCCGGGGTGAGCCGCC GGCATGGGCCAGGACCTGGTGGACATCCGGGGTGAGCCGCC < 41bp 0.53834022470078 0.738927151813796 NA NA prediction 0.401173854226033 Functional Gain - DISP3 ENSG00000204624 CDS Human protein_coding chr1:11562135 chr1:11562134 nonsynonymous SNV 0.750 4 20 hm7G_associated_SNPs_38304 0 0 0 0 1 DISP3 chr1:11562145 5'GT 11562145 Upstream 12bp 35265 chr16 28884519 28884519 1 + G A LUAD 28884520 + 28884500 28884540 41 AGGCTGGGAGCCATGCGGGGGTGTGCGAGGGAGATGGATGC AGGCTGGGAGCCATGCGGGAGTGTGCGAGGGAGATGGATGC < 41bp 0.518729432128628 0.719315479496789 NA NA prediction 0.401172094736321 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884520 chr16:28884519 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_38305 0 0 1 0 2 SH2B1 chr16:28884491 3'AG 28884491 Downstream 29bp 35266 chr16 28884519 28884519 1 + G A LUAD 28884520 + 28884500 28884540 41 AGGCTGGGAGCCATGCGGGGGTGTGCGAGGGAGATGGATGC AGGCTGGGAGCCATGCGGGAGTGTGCGAGGGAGATGGATGC < 41bp 0.518729432128628 0.719315479496789 NA NA prediction 0.401172094736321 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28884520 chr16:28884519 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_38305 0 0 1 0 2 SH2B1 chr16:28884590 5'GT 28884590 Upstream 72bp 35267 chr17 78210776 78210776 1 + C T rs3924207 78210777 + 78210757 78210797 41 CCCTGGTTGCGTACTCCTTCGAGGTGACTGGATACCAGCCT CCCTGGTTGCGTACTCCTTTGAGGTGACTGGATACCAGCCT < 41bp 0.559743775832899 0.760326461827071 NA NA prediction 0.401165371988343 Functional Gain - SLC26A11 ENSG00000181045 CDS Human protein_coding chr17:78210777 chr17:78210776 synonymous SNV . 0 20 hm7G_associated_SNPs_38312 0 0 1 0 1 SLC26A11 chr17:78210727 3'AG 78210727 Downstream 50bp 35268 chr19 58797099 58797099 1 + G A COAD 58797100 + 58797080 58797120 41 CAGGAACCAGTGACCTTCCGGGATGTGGCTGTGGACTTTAC CAGGAACCAGTGACCTTCCAGGATGTGGCTGTGGACTTTAC < 41bp 0.48610542719653 0.700581383789145 NA NA prediction 0.40116276757829 Functional Gain - ZNF8 ENSG00000083842;ENSG00000273439 CDS Human other chr19:58797100 chr19:58797099 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_38313 0 0 1 0 1 ZNF8 chr19:58797083 3'AG 58797083 Downstream 17bp 35269 chr16 2570863 2570863 1 + G A BLCA 2570864 + 2570844 2570884 41 ACGAGCGGCGGGACTGCGGGGGCCGCATCTTGGCTCCCGGA ACGAGCGGCGGGACTGCGGAGGCCGCATCTTGGCTCCCGGA < 41bp 0.460502352526263 0.700580788756069 NA NA prediction 0.401161577512138 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2570864 chr16:2570863 synonymous SNV . 0 20 hm7G_associated_SNPs_38314 0 0 1 0 2 AMDHD2 chr16:2570770 3'AG 2570770 Downstream 94bp 35270 chr16 2570863 2570863 1 + G A BLCA 2570864 + 2570844 2570884 41 ACGAGCGGCGGGACTGCGGGGGCCGCATCTTGGCTCCCGGA ACGAGCGGCGGGACTGCGGAGGCCGCATCTTGGCTCCCGGA < 41bp 0.460502352526263 0.700580788756069 NA NA prediction 0.401161577512138 Functional Gain - AMDHD2 ENSG00000162066 CDS Human protein_coding chr16:2570864 chr16:2570863 synonymous SNV . 0 20 hm7G_associated_SNPs_38314 0 0 1 0 2 AMDHD2 chr16:2570906 5'GT 2570906 Upstream 44bp 35271 chr6 45399649 45399649 1 + C T UCEC 45399650 + 45399630 45399670 41 ACTGTGGTTACTGTCATGGCGGGTAACGATGAAAATTATTC ACTGTGGTTACTGTCATGGTGGGTAACGATGAAAATTATTC < 41bp 0.482545069212167 0.700578747795669 NA NA prediction 0.401157495591338 Functional Gain - RUNX2 ENSG00000124813 CDS Human protein_coding chr6:45399650 chr6:45399649 nonsynonymous SNV 0.990 5 20 hm7G_associated_SNPs_38316 0 0 0 0 1 RUNX2 chr6:45399600 3'AG 45399600 Downstream 50bp 35272 chr19 11224354 11224354 1 + C T COAD 11224355 + 11224335 11224375 41 CTGGGCACTGTCTCTGTTGCGGATACCAAGGGCGTGAAGAG CTGGGCACTGTCTCTGTTGTGGATACCAAGGGCGTGAAGAG < 41bp 0.567839193422101 0.768417727247195 NA NA prediction 0.401157067650186 Functional Gain - LDLR ENSG00000130164 CDS Human protein_coding chr19:11224355 chr19:11224354 nonsynonymous SNV 0.123 3 20 hm7G_associated_SNPs_38318 1 0 1 0 1 LDLR chr19:11224438 5'GT 11224438 Upstream 85bp 35273 chr12 50037935 50037935 1 + G A ESCA 50037936 + 50037916 50037956 41 GAGGGTGAGCTGGAGAGGCGGCGGCGGACACTCCTACAGCA GAGGGTGAGCTGGAGAGGCAGCGGCGGACACTCCTACAGCA < 41bp 0.524430074409511 0.725007935684589 NA NA prediction 0.401155722550156 Functional Gain - PRPF40B ENSG00000110844 CDS Human protein_coding chr12:50037936 chr12:50037935 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_38319 0 0 1 0 1 PRPF40B chr12:50037883 3'AG 50037883 Downstream 53bp 35274 chr17 43322740 43322740 1 + C T GBM 43322741 + 43322721 43322761 41 GAGTTCCTGAGGGCCAACTCGCCCACCATGGACAAGCTGCT GAGTTCCTGAGGGCCAACTTGCCCACCATGGACAAGCTGCT < 41bp 0.546722069858191 0.747299761969801 NA NA prediction 0.401155384223221 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43322741 chr17:43322740 nonsynonymous SNV 0.986 1 20 hm7G_associated_SNPs_38320 0 0 0 0 1 FMNL1 chr17:43322783 5'GT 43322783 Upstream 44bp 35275 chr15 66615213 66615213 1 + C T UCEC 66615214 + 66615194 66615234 41 TGGAACTTGGGGTCCACATCGCAGATGTAACACACTTTGTG TGGAACTTGGGGTCCACATTGCAGATGTAACACACTTTGTG < 41bp 0.487700628210101 0.700576634619355 NA NA prediction 0.401153269238711 Functional Gain - DIS3L ENSG00000166938 CDS Human protein_coding chr15:66615214 chr15:66615213 synonymous SNV . 0 20 hm7G_associated_SNPs_38321 0 0 1 0 1 DIS3L chr15:66615272 5'GT 66615272 Upstream 60bp 35276 chr2 25042948 25042948 1 - G A PAAD 25042947 - 25042927 25042967 41 AAGTCATCCTCCGAGAGTACGGCTTCCGCTTTGTGAGGCGA AAGTCATCCTCCGAGAGTATGGCTTCCGCTTTGTGAGGCGA < 41bp 0.527907344935742 0.728482466304712 NA NA prediction 0.40115024273794 Functional Gain - ADCY3 ENSG00000138031 CDS Human protein_coding chr2:25042947 chr2:25042948 synonymous SNV . 0 20 hm7G_associated_SNPs_38322 0 0 1 0 1 ADCY3 chr2:25042983 3'AG 25042983 Downstream 36bp 35277 chr1 154315375 154315375 1 + C T PRAD 154315376 + 154315356 154315396 41 AAGATCGGGGACCCCCACACGCATGAGTTCTTCCGCCTCCT AAGATCGGGGACCCCCACATGCATGAGTTCTTCCGCCTCCT < 41bp 0.486608795736635 0.700573740741841 NA NA prediction 0.401147481483681 Functional Gain - ATP8B2 ENSG00000143515 CDS Human protein_coding chr1:154315376 chr1:154315375 nonsynonymous SNV 0.837 3 20 hm7G_associated_SNPs_38324 0 0 1 0 1 ATP8B2 chr1:154315437 5'GT 154315437 Upstream 63bp 35278 chr16 31120848 31120848 1 + C T COAD 31120849 + 31120829 31120869 41 TAGCCCTCAGTCCGCCTAACGCCCACCATGATGCTCTACGC TAGCCCTCAGTCCGCCTAATGCCCACCATGATGCTCTACGC < 41bp 0.52746925352338 0.72804244866439 NA NA prediction 0.40114639028202 Functional Gain - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31120849 chr16:31120848 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_38326 0 0 1 0 2 BCKDK chr16:31120832 3'AG 31120832 Downstream 17bp 35279 chr16 31120848 31120848 1 + C T COAD 31120849 + 31120829 31120869 41 TAGCCCTCAGTCCGCCTAACGCCCACCATGATGCTCTACGC TAGCCCTCAGTCCGCCTAATGCCCACCATGATGCTCTACGC < 41bp 0.52746925352338 0.72804244866439 NA NA prediction 0.40114639028202 Functional Gain - BCKDK ENSG00000103507 CDS Human protein_coding chr16:31120849 chr16:31120848 nonsynonymous SNV 0.979 4 20 hm7G_associated_SNPs_38326 0 0 1 0 2 BCKDK chr16:31120900 5'GT 31120900 Upstream 53bp 35280 chr12 32369208 32369208 1 + C T HNSC 32369209 + 32369189 32369229 41 GCAGTCCTTCTCCATCCACCGGAAGGTTGCTGAAGATGGAG GCAGTCCTTCTCCATCCACTGGAAGGTTGCTGAAGATGGAG < 41bp 0.548256753145991 0.748828821100089 NA NA prediction 0.401144135908196 Functional Gain - BICD1 ENSG00000151746 CDS Human protein_coding chr12:32369209 chr12:32369208 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38327 0 0 1 0 1 BICD1 chr12:32369181 3'AG 32369181 Downstream 28bp 35281 chr20 32328774 32328774 1 + C T SKCM 32328775 + 32328755 32328795 41 CAAGGAGCAGTCCCTGATCCGACAGGCCAGAGTGTCAATGC CAAGGAGCAGTCCCTGATCTGACAGGCCAGAGTGTCAATGC < 41bp 0.540608738802084 0.741180683261168 NA NA prediction 0.401143888918167 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32328775 chr20:32328774 nonsynonymous SNV 0.751 3 20 hm7G_associated_SNPs_38328 0 0 0 0 2 ZNF341 chr20:32328708 3'AG 32328708 Downstream 67bp 35282 chr20 32328774 32328774 1 + C T SKCM 32328775 + 32328755 32328795 41 CAAGGAGCAGTCCCTGATCCGACAGGCCAGAGTGTCAATGC CAAGGAGCAGTCCCTGATCTGACAGGCCAGAGTGTCAATGC < 41bp 0.540608738802084 0.741180683261168 NA NA prediction 0.401143888918167 Functional Gain - ZNF341 ENSG00000131061 CDS Human protein_coding chr20:32328775 chr20:32328774 nonsynonymous SNV 0.751 3 20 hm7G_associated_SNPs_38328 0 0 0 0 2 ZNF341 chr20:32328818 5'GT 32328818 Upstream 45bp 35283 chrX 37665739 37665739 1 + G A rs13306300 37665740 + 37665720 37665760 41 GCAGGAAAGGAACAATGCCGGCTTCCTCAGCTACAACATCT GCAGGAAAGGAACAATGCCAGCTTCCTCAGCTACAACATCT < 41bp 0.519960180717194 0.720530898742626 NA NA prediction 0.401141436050863 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37665740 chrX:37665739 nonsynonymous SNV 0.140 1 20 hm7G_associated_SNPs_38330 0 0 0 0 2 CYBB chrX:37665640 3'AG 37665640 Downstream 100bp 35284 chrX 37665739 37665739 1 + G A rs13306300 37665740 + 37665720 37665760 41 GCAGGAAAGGAACAATGCCGGCTTCCTCAGCTACAACATCT GCAGGAAAGGAACAATGCCAGCTTCCTCAGCTACAACATCT < 41bp 0.519960180717194 0.720530898742626 NA NA prediction 0.401141436050863 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37665740 chrX:37665739 nonsynonymous SNV 0.140 1 20 hm7G_associated_SNPs_38330 0 0 0 0 2 CYBB chrX:37665786 5'GT 37665786 Upstream 48bp 35285 chr2 233394675 233394675 1 + C T COAD 233394676 + 233394656 233394696 41 GGAGTGGGAGATAGTCCACCGGCCGGCCAGGGTCAACGTGG GGAGTGGGAGATAGTCCACTGGCCGGCCAGGGTCAACGTGG < 41bp 0.550012043661269 0.750582590227426 NA NA prediction 0.401141093132316 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233394676 chr2:233394675 nonsynonymous SNV 0.831 3 20 hm7G_associated_SNPs_38332 0 0 0 0 1 CHRND chr2:233394649 3'AG 233394649 Downstream 27bp 35286 chr18 74592193 74592193 1 + C T UCEC 74592194 + 74592174 74592214 41 CTGGAGCTCTCAGAGCCGGCGCCGGTGGAGTCGGGGCAGTC CTGGAGCTCTCAGAGCCGGTGCCGGTGGAGTCGGGGCAGTC < 41bp 0.543230508651791 0.743800669770995 NA NA prediction 0.401140322238409 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74592194 chr18:74592193 nonsynonymous SNV 0.103 0 20 hm7G_associated_SNPs_38333 0 0 1 0 1 ZNF236 chr18:74592272 5'GT 74592272 Upstream 80bp 35287 chr4 39230260 39230260 1 + G T PRAD 39230261 + 39230241 39230281 41 TCAGCAACTTAAAAGATACGGGGCCTGACGAACTGAGACCA TCAGCAACTTAAAAGATACTGGGCCTGACGAACTGAGACCA < 41bp 0.358833469013287 0.700569904636736 NA NA prediction 0.401139809273472 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39230261 chr4:39230260 synonymous SNV . 0 20 hm7G_associated_SNPs_38334 0 0 0 0 1 WDR19 chr4:39230310 5'GT 39230310 Upstream 51bp 35288 chr18 51892104 51892104 1 + C T CESC 51892105 + 51892085 51892125 41 TTAGCAAATCTCCTGTTCCCGTTAACTCTGATGATAGTCCT TTAGCAAATCTCCTGTTCCTGTTAACTCTGATGATAGTCCT < 41bp 0.514035672883048 0.714602322916173 NA NA prediction 0.40113330006625 Functional Gain - C18orf54 ENSG00000166845 CDS Human protein_coding chr18:51892105 chr18:51892104 synonymous SNV . 0 20 hm7G_associated_SNPs_38335 0 0 0 0 2 C18orf54 chr18:51892089 3'AG 51892089 Downstream 16bp 35289 chr18 51892104 51892104 1 + C T CESC 51892105 + 51892085 51892125 41 TTAGCAAATCTCCTGTTCCCGTTAACTCTGATGATAGTCCT TTAGCAAATCTCCTGTTCCTGTTAACTCTGATGATAGTCCT < 41bp 0.514035672883048 0.714602322916173 NA NA prediction 0.40113330006625 Functional Gain - C18orf54 ENSG00000166845 CDS Human protein_coding chr18:51892105 chr18:51892104 synonymous SNV . 0 20 hm7G_associated_SNPs_38335 0 0 0 0 2 C18orf54 chr18:51892191 5'GT 51892191 Upstream 88bp 35290 chr3 121647961 121647961 1 + C T COAD 121647962 + 121647942 121647982 41 CTGGTACAGTCTTGTCATTCGTGAAGATGGGAACAGTATCT CTGGTACAGTCTTGTCATTTGTGAAGATGGGAACAGTATCT < 41bp 0.524964807471063 0.725530145068306 NA NA prediction 0.401130675194486 Functional Gain - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121647962 chr3:121647961 nonsynonymous SNV 0.025 0 20 hm7G_associated_SNPs_38336 0 0 0 0 1 SLC15A2 chr3:121647993 5'GT 121647993 Upstream 33bp 35291 chr11 33640191 33640191 1 + C T COAD 33640192 + 33640172 33640212 41 GCGACCCCGGCGTGGAATCCGCAACAGCGGATACGATGTGA GCGACCCCGGCGTGGAATCTGCAACAGCGGATACGATGTGA < 41bp 0.55261611287092 0.753181319712671 NA NA prediction 0.401130413683501 Functional Gain - KIAA1549L ENSG00000110427 CDS Human protein_coding chr11:33640192 chr11:33640191 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_38338 0 0 0 0 1 KIAA1549L chr11:33640208 5'GT 33640208 Upstream 18bp 35292 chr2 64112731 64112731 1 + G T COAD 64112732 + 64112712 64112752 41 TTTTTTTAAAGGTACCCGAGGATTAATAAAGAATCTTTACT TTTTTTTAAAGGTACCCGATGATTAATAAAGAATCTTTACT < 41bp 0.699209694649437 0.899773691633946 NA NA prediction 0.401127993969016 Functional Gain - UGP2 ENSG00000169764 CDS Human protein_coding chr2:64112732 chr2:64112731 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38339 0 0 1 0 1 UGP2 chr2:64112723 3'AG 64112723 Downstream 9bp 35293 chr19 55798451 55798451 1 + G A UCEC 55798452 + 55798432 55798472 41 TGAACCGGGAGAAGCTGTCGGAGTCGGTGCTGATGAAGGTG TGAACCGGGAGAAGCTGTCAGAGTCGGTGCTGATGAAGGTG < 41bp 0.552932530210036 0.753496055651496 NA NA prediction 0.40112705088292 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55798452 chr19:55798451 synonymous SNV . 0 20 hm7G_associated_SNPs_38340 0 0 1 0 2 BRSK1 chr19:55798375 3'AG 55798375 Downstream 77bp 35294 chr19 55798451 55798451 1 + G A UCEC 55798452 + 55798432 55798472 41 TGAACCGGGAGAAGCTGTCGGAGTCGGTGCTGATGAAGGTG TGAACCGGGAGAAGCTGTCAGAGTCGGTGCTGATGAAGGTG < 41bp 0.552932530210036 0.753496055651496 NA NA prediction 0.40112705088292 Functional Gain - BRSK1 ENSG00000160469 CDS Human protein_coding chr19:55798452 chr19:55798451 synonymous SNV . 0 20 hm7G_associated_SNPs_38340 0 0 1 0 2 BRSK1 chr19:55798469 5'GT 55798469 Upstream 19bp 35295 chr17 79205252 79205252 1 - G A UCEC 79205251 - 79205231 79205271 41 GACTGCTCAACTGTGAGGCCGTGCTGCAGCTGCTGACCTGC GACTGCTCAACTGTGAGGCTGTGCTGCAGCTGCTGACCTGC < 41bp 0.503777388315265 0.704340091982333 NA NA prediction 0.401125407334137 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79205251 chr17:79205252 synonymous SNV . 0 20 hm7G_associated_SNPs_38342 0 0 1 0 2 TEPSIN chr17:79205198 5'GT 79205198 Upstream 55bp 35296 chr17 79205252 79205252 1 - G A UCEC 79205251 - 79205231 79205271 41 GACTGCTCAACTGTGAGGCCGTGCTGCAGCTGCTGACCTGC GACTGCTCAACTGTGAGGCTGTGCTGCAGCTGCTGACCTGC < 41bp 0.503777388315265 0.704340091982333 NA NA prediction 0.401125407334137 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79205251 chr17:79205252 synonymous SNV . 0 20 hm7G_associated_SNPs_38342 0 0 1 0 2 TEPSIN chr17:79205276 3'AG 79205276 Downstream 25bp 35297 chr22 31664134 31664134 1 + C T SKCM 31664135 + 31664115 31664155 41 TTCCCCATTCTGCAGGATCCGTTCCCCTGGCAGCAGAAGGT TTCCCCATTCTGCAGGATCTGTTCCCCTGGCAGCAGAAGGT < 41bp 0.536684778721233 0.737247430902745 NA NA prediction 0.401125304363022 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31664135 chr22:31664134 nonsynonymous SNV 0.841 3 20 hm7G_associated_SNPs_38343 0 0 1 0 2 LIMK2 chr22:31664130 3'AG 31664130 Downstream 5bp 35298 chr22 31664134 31664134 1 + C T SKCM 31664135 + 31664115 31664155 41 TTCCCCATTCTGCAGGATCCGTTCCCCTGGCAGCAGAAGGT TTCCCCATTCTGCAGGATCTGTTCCCCTGGCAGCAGAAGGT < 41bp 0.536684778721233 0.737247430902745 NA NA prediction 0.401125304363022 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31664135 chr22:31664134 nonsynonymous SNV 0.841 3 20 hm7G_associated_SNPs_38343 0 0 1 0 2 LIMK2 chr22:31664186 5'GT 31664186 Upstream 53bp 35299 chrX 47045156 47045156 1 + C T CESC 47045157 + 47045137 47045177 41 GAGCCCACTTGTCAGAAAACGAGCTAGAAGCACTAGAGAAG GAGCCCACTTGTCAGAAAATGAGCTAGAAGCACTAGAGAAG < 41bp 0.489740928296206 0.700562253800764 NA NA prediction 0.401124507601528 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47045157 chrX:47045156 synonymous SNV . 0 20 hm7G_associated_SNPs_38344 0 0 1 0 2 RBM10 chrX:47045115 3'AG 47045115 Downstream 42bp 35300 chrX 47045156 47045156 1 + C T CESC 47045157 + 47045137 47045177 41 GAGCCCACTTGTCAGAAAACGAGCTAGAAGCACTAGAGAAG GAGCCCACTTGTCAGAAAATGAGCTAGAAGCACTAGAGAAG < 41bp 0.489740928296206 0.700562253800764 NA NA prediction 0.401124507601528 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47045157 chrX:47045156 synonymous SNV . 0 20 hm7G_associated_SNPs_38344 0 0 1 0 2 RBM10 chrX:47045189 5'GT 47045189 Upstream 34bp 35301 chr7 139653238 139653238 1 + C T UCEC 139653239 + 139653219 139653259 41 GCTATGCGGAATCTGGGGACGCATTTGACATCCAGAGGTAA GCTATGCGGAATCTGGGGATGCATTTGACATCCAGAGGTAA < 41bp 0.555798851457914 0.756360915658815 NA NA prediction 0.401124128401803 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139653239 chr7:139653238 synonymous SNV . 0 20 hm7G_associated_SNPs_38345 0 0 0 0 2 TBXAS1 chr7:139653167 3'AG 139653167 Downstream 72bp 35302 chr7 139653238 139653238 1 + C T UCEC 139653239 + 139653219 139653259 41 GCTATGCGGAATCTGGGGACGCATTTGACATCCAGAGGTAA GCTATGCGGAATCTGGGGATGCATTTGACATCCAGAGGTAA < 41bp 0.555798851457914 0.756360915658815 NA NA prediction 0.401124128401803 Functional Gain - TBXAS1 ENSG00000059377 CDS Human protein_coding chr7:139653239 chr7:139653238 synonymous SNV . 0 20 hm7G_associated_SNPs_38345 0 0 0 0 2 TBXAS1 chr7:139653255 5'GT 139653255 Upstream 18bp 35303 chr12 102011002 102011002 1 + C T rs74843538 102011003 + 102010983 102011023 41 CAAGTAAAGAGAAGGAGGCCGGAACTACACCAGCAAAAGGT CAAGTAAAGAGAAGGAGGCTGGAACTACACCAGCAAAAGGT < 41bp 0.527115573803629 0.727676387242773 NA NA prediction 0.401121626878287 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102011003 chr12:102011002 synonymous SNV . 0 20 hm7G_associated_SNPs_38346 0 0 0 0 2 MYBPC1 chr12:102010980 3'AG 102010980 Downstream 23bp 35304 chr12 102011002 102011002 1 + C T rs74843538 102011003 + 102010983 102011023 41 CAAGTAAAGAGAAGGAGGCCGGAACTACACCAGCAAAAGGT CAAGTAAAGAGAAGGAGGCTGGAACTACACCAGCAAAAGGT < 41bp 0.527115573803629 0.727676387242773 NA NA prediction 0.401121626878287 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102011003 chr12:102011002 synonymous SNV . 0 20 hm7G_associated_SNPs_38346 0 0 0 0 2 MYBPC1 chr12:102011021 5'GT 102011021 Upstream 20bp 35305 chr16 67292313 67292313 1 + G T UCEC 67292314 + 67292294 67292334 41 ATCTGGGATGTGTACTACAGGCTTAACATCCGGGATGCCAT ATCTGGGATGTGTACTACATGCTTAACATCCGGGATGCCAT < 41bp 0.717294679707725 0.917853818643425 NA NA prediction 0.4011182778714 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67292314 chr16:67292313 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38348 0 0 1 0 2 SLC9A5 chr16:67292221 3'AG 67292221 Downstream 93bp 35306 chr16 67292313 67292313 1 + G T UCEC 67292314 + 67292294 67292334 41 ATCTGGGATGTGTACTACAGGCTTAACATCCGGGATGCCAT ATCTGGGATGTGTACTACATGCTTAACATCCGGGATGCCAT < 41bp 0.717294679707725 0.917853818643425 NA NA prediction 0.4011182778714 Functional Gain - SLC9A5 ENSG00000135740 CDS Human protein_coding chr16:67292314 chr16:67292313 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38348 0 0 1 0 2 SLC9A5 chr16:67292350 5'GT 67292350 Upstream 38bp 35307 chr20 3726661 3726661 1 + C T OV 3726662 + 3726642 3726682 41 GCCAGCCAAGCAGTTCATGCGGGAGGCTGCCTACCTGGTGA GCCAGCCAAGCAGTTCATGTGGGAGGCTGCCTACCTGGTGA < 41bp 0.491293942340056 0.700558237894142 NA NA prediction 0.401116475788285 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3726662 chr20:3726661 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_38349 0 0 0 0 3 HSPA12B chr20:3726562 3'AG 3726562 Downstream 100bp 35308 chr20 3726661 3726661 1 + C T OV 3726662 + 3726642 3726682 41 GCCAGCCAAGCAGTTCATGCGGGAGGCTGCCTACCTGGTGA GCCAGCCAAGCAGTTCATGTGGGAGGCTGCCTACCTGGTGA < 41bp 0.491293942340056 0.700558237894142 NA NA prediction 0.401116475788285 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3726662 chr20:3726661 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_38349 0 0 0 0 3 HSPA12B chr20:3726565 3'AG 3726565 Downstream 97bp 35309 chr20 3726661 3726661 1 + C T OV 3726662 + 3726642 3726682 41 GCCAGCCAAGCAGTTCATGCGGGAGGCTGCCTACCTGGTGA GCCAGCCAAGCAGTTCATGTGGGAGGCTGCCTACCTGGTGA < 41bp 0.491293942340056 0.700558237894142 NA NA prediction 0.401116475788285 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3726662 chr20:3726661 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_38349 0 0 0 0 3 HSPA12B chr20:3726678 5'GT 3726678 Upstream 18bp 35310 chr12 49938098 49938098 1 + C T UCEC 49938099 + 49938079 49938119 41 CCCTGCTCGCGCACTGGGTCGCCTGCGTCTGGTTTTACATT CCCTGCTCGCGCACTGGGTTGCCTGCGTCTGGTTTTACATT < 41bp 0.528594940019837 0.72915265606641 NA NA prediction 0.401115432093148 Functional Gain - KCNH3 ENSG00000135519 CDS Human protein_coding chr12:49938099 chr12:49938098 synonymous SNV . 0 20 hm7G_associated_SNPs_38350 0 0 0 0 1 KCNH3 chr12:49938165 5'GT 49938165 Upstream 68bp 35311 chr7 149423093 149423093 1 + C T STAD 149423094 + 149423074 149423114 41 TCTCCTCATCCAGCAGCACCGACTGGGACCTGGATTTTGGG TCTCCTCATCCAGCAGCACTGACTGGGACCTGGATTTTGGG < 41bp 0.549286259893249 0.74984358417298 NA NA prediction 0.401114648559462 Functional Gain - KRBA1 ENSG00000133619 CDS Human protein_coding chr7:149423094 chr7:149423093 synonymous SNV . 0 20 hm7G_associated_SNPs_38351 0 0 0 0 1 KRBA1 chr7:149423151 5'GT 149423151 Upstream 59bp 35312 chr15 42139713 42139713 1 + C T HNSC 42139714 + 42139694 42139734 41 GACTCCTTCCGGGAGTACTCGGCCCCTGGTGAGCTGCTGTT GACTCCTTCCGGGAGTACTTGGCCCCTGGTGAGCTGCTGTT < 41bp 0.506820689141323 0.707375966886248 NA NA prediction 0.401110555489851 Functional Gain - JMJD7-PLA2G4B;PLA2G4B ENSG00000168970;ENSG00000243708 CDS Human other chr15:42139714 chr15:42139713 nonsynonymous SNV 0.326 2 20 hm7G_associated_SNPs_38353 0 0 0 0 1 JMJD7-PLA2G4B;PLA2G4B chr15:42139721 5'GT 42139721 Upstream 9bp 35313 chr2 121729594 121729594 1 + C T COAD 121729595 + 121729575 121729615 41 AGCGCAGCAAGGTCAAGACCGAGCCTGAGGGCCTGCGGCCG AGCGCAGCAAGGTCAAGACTGAGCCTGAGGGCCTGCGGCCG < 41bp 0.507737949535815 0.708292952509962 NA NA prediction 0.401110005948294 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121729595 chr2:121729594 synonymous SNV . 0 20 hm7G_associated_SNPs_38355 0 0 0 0 2 GLI2 chr2:121729517 3'AG 121729517 Downstream 78bp 35314 chr2 121729594 121729594 1 + C T COAD 121729595 + 121729575 121729615 41 AGCGCAGCAAGGTCAAGACCGAGCCTGAGGGCCTGCGGCCG AGCGCAGCAAGGTCAAGACTGAGCCTGAGGGCCTGCGGCCG < 41bp 0.507737949535815 0.708292952509962 NA NA prediction 0.401110005948294 Functional Gain - GLI2 ENSG00000074047 CDS Human protein_coding chr2:121729595 chr2:121729594 synonymous SNV . 0 20 hm7G_associated_SNPs_38355 0 0 0 0 2 GLI2 chr2:121729639 5'GT 121729639 Upstream 46bp 35315 chr11 119027586 119027586 1 + C T rs572465991 119027587 + 119027567 119027607 41 ACTCTGTGTCCCCAGTCATCGAGGTGGCCTCTGGCGAGTAT ACTCTGTGTCCCCAGTCATTGAGGTGGCCTCTGGCGAGTAT < 41bp 0.555635031799764 0.756190016209733 NA NA prediction 0.401109968819937 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119027587 chr11:119027586 synonymous SNV . 0 20 hm7G_associated_SNPs_38356 0 0 0 0 1 ABCG4 chr11:119027582 3'AG 119027582 Downstream 5bp 35316 chr5 133861426 133861426 1 + G T rs75304543 133861427 + 133861407 133861447 41 CAGTTGGAGGCTATTTTTTGGGGGGGGTGAGTAGCGTCCAT CAGTTGGAGGCTATTTTTTTGGGGGGGTGAGTAGCGTCCAT < 41bp 0.370874679087426 0.700554153681308 NA NA prediction 0.401108307362615 Functional Gain - JADE2 ENSG00000043143 UTR5 Human protein_coding chr5:133861427 chr5:133861426 . . 0 20 hm7G_associated_SNPs_38357 0 0 0 0 1 JADE2 chr5:133861432 5'GT 133861432 Upstream 7bp 35317 chr19 49897808 49897808 1 + C T LUSC 49897809 + 49897789 49897829 41 GAGCAAATACTCAACTCCACGTTCGAAGCTTGTGACCCTCA GAGCAAATACTCAACTCCATGTTCGAAGCTTGTGACCCTCA < 41bp 0.504722909243727 0.705273323771182 NA NA prediction 0.401100829054909 Functional Gain - CCDC155 ENSG00000161609 CDS Human protein_coding chr19:49897809 chr19:49897808 nonsynonymous SNV 0.776 0 20 hm7G_associated_SNPs_38360 0 0 0 0 1 CCDC155 chr19:49897837 5'GT 49897837 Upstream 30bp 35318 chr2 3447568 3447568 1 + C T UCEC 3447569 + 3447549 3447589 41 GGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGA GGCTCCATGGTCCCCTTCTTGATGCGCATCTTGCACGCGGA < 41bp 0.488862451554357 0.700548645466262 NA NA prediction 0.401097290932525 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3447569 chr2:3447568 nonsynonymous SNV 0.953 4 20 hm7G_associated_SNPs_38363 0 0 1 0 2 TRAPPC12 chr2:3447550 3'AG 3447550 Downstream 19bp 35319 chr2 3447568 3447568 1 + C T UCEC 3447569 + 3447549 3447589 41 GGCTCCATGGTCCCCTTCTCGATGCGCATCTTGCACGCGGA GGCTCCATGGTCCCCTTCTTGATGCGCATCTTGCACGCGGA < 41bp 0.488862451554357 0.700548645466262 NA NA prediction 0.401097290932525 Functional Gain - TRAPPC12 ENSG00000171853 CDS Human protein_coding chr2:3447569 chr2:3447568 nonsynonymous SNV 0.953 4 20 hm7G_associated_SNPs_38363 0 0 1 0 2 TRAPPC12 chr2:3447662 5'GT 3447662 Upstream 95bp 35320 chr19 48917652 48917652 1 + C T STAD 48917653 + 48917633 48917673 41 GGCAGCTGGGAGCAGCAGACGCTCCGCCTCAAGTACCCGCT GGCAGCTGGGAGCAGCAGATGCTCCGCCTCAAGTACCCGCT < 41bp 0.534051409162945 0.734599363898456 NA NA prediction 0.401095909471023 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48917653 chr19:48917652 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_38364 0 0 0 0 1 GRIN2D chr19:48917630 3'AG 48917630 Downstream 23bp 35321 chr1 227170663 227170663 1 + C T HNSC 227170664 + 227170644 227170684 41 ACTTCGAGGAGCGGCCCTTCGCCGCCGCATCCATTGGGCAG ACTTCGAGGAGCGGCCCTTTGCCGCCGCATCCATTGGGCAG < 41bp 0.54312665793007 0.743674172292868 NA NA prediction 0.401095028725596 Functional Gain - COQ8A ENSG00000163050 CDS Human protein_coding chr1:227170664 chr1:227170663 synonymous SNV . 0 20 hm7G_associated_SNPs_38365 0 0 1 0 1 COQ8A chr1:227170735 5'GT 227170735 Upstream 73bp 35322 chr2 136537877 136537877 1 + C T COAD 136537878 + 136537858 136537898 41 AATTTCTTGTTTAGTAATCCGCCTCCCACACAGACTTCAGT AATTTCTTGTTTAGTAATCTGCCTCCCACACAGACTTCAGT < 41bp 0.538294437813908 0.738840300150984 NA NA prediction 0.401091724674151 Functional Gain - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136537878 chr2:136537877 nonsynonymous SNV 0.880 4 20 hm7G_associated_SNPs_38366 0 0 1 0 1 UBXN4 chr2:136537955 5'GT 136537955 Upstream 79bp 35323 chr5 74009453 74009453 1 + G T LIHC 74009454 + 74009434 74009474 41 CTGGGCATACACTATCTTGGGGAAAAGGTAAGGAGTTGTAT CTGGGCATACACTATCTTGTGGAAAAGGTAAGGAGTTGTAT < 41bp 0.703858095285103 0.904401904141242 NA NA prediction 0.401087617712278 Functional Gain - HEXB ENSG00000049860 CDS Human protein_coding chr5:74009454 chr5:74009453 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_38368 0 0 1 0 1 HEXB chr5:74009460 5'GT 74009460 Upstream 8bp 35324 chr16 57758736 57758736 1 + C T rs114195136 57758737 + 57758717 57758757 41 CAGTGCAGAGTCAAACCCCCGGCCCATTGTGGTAAGAGCTC CAGTGCAGAGTCAAACCCCTGGCCCATTGTGGTAAGAGCTC < 41bp 0.529775788186252 0.730317746018119 NA NA prediction 0.401083915663735 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57758737 chr16:57758736 nonsynonymous SNV 0.946 3 20 hm7G_associated_SNPs_38371 0 0 0 0 1 DRC7 chr16:57758747 5'GT 57758747 Upstream 12bp 35325 chr1 154516537 154516537 1 + C T HNSC 154516538 + 154516518 154516558 41 GAGGCGGGGCTGCTGGTGACGAGTATCGTCCCGAAGACCCC GAGGCGGGGCTGCTGGTGATGAGTATCGTCCCGAAGACCCC < 41bp 0.565509017127131 0.766050378632421 NA NA prediction 0.401082723010581 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516538 chr1:154516537 nonsynonymous SNV 0.073 4 20 hm7G_associated_SNPs_38372 0 0 0 0 2 TDRD10 chr1:154516439 3'AG 154516439 Downstream 99bp 35326 chr1 154516537 154516537 1 + C T HNSC 154516538 + 154516518 154516558 41 GAGGCGGGGCTGCTGGTGACGAGTATCGTCCCGAAGACCCC GAGGCGGGGCTGCTGGTGATGAGTATCGTCCCGAAGACCCC < 41bp 0.565509017127131 0.766050378632421 NA NA prediction 0.401082723010581 Functional Gain - TDRD10 ENSG00000163239 CDS Human protein_coding chr1:154516538 chr1:154516537 nonsynonymous SNV 0.073 4 20 hm7G_associated_SNPs_38372 0 0 0 0 2 TDRD10 chr1:154516586 5'GT 154516586 Upstream 50bp 35327 chr22 31658650 31658650 1 + C T UCEC 31658651 + 31658631 31658671 41 ACATGACCCCGTCTCCCAACGCCTGGACCAGCTGCGGCTGG ACATGACCCCGTCTCCCAATGCCTGGACCAGCTGCGGCTGG < 41bp 0.55640043738357 0.756941371681995 NA NA prediction 0.40108186859685 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31658651 chr22:31658650 nonsynonymous SNV 0.992 1 20 hm7G_associated_SNPs_38373 0 0 1 0 1 LIMK2 chr22:31658581 3'AG 31658581 Downstream 70bp 35328 chr15 75094740 75094740 1 + C T SARC 75094741 + 75094721 75094761 41 CCCCCGACGGCTGCCCGCCCGCAGTCTATGAAGTCATGAAG CCCCCGACGGCTGCCCGCCTGCAGTCTATGAAGTCATGAAG < 41bp 0.516257322448583 0.716795338154002 NA NA prediction 0.401076031410838 Functional Gain - CSK ENSG00000103653 CDS Human protein_coding chr15:75094741 chr15:75094740 synonymous SNV . 0 20 hm7G_associated_SNPs_38377 0 0 1 0 1 CSK chr15:75094672 3'AG 75094672 Downstream 69bp 35329 chr22 51182577 51182577 1 + C T COAD 51182578 + 51182558 51182598 41 CCCAGTGGTACAATGGGCGCGTTCAGCCAACCAATGTGTGC CCCAGTGGTACAATGGGCGTGTTCAGCCAACCAATGTGTGC < 41bp 0.520884863857943 0.721421572016026 NA NA prediction 0.401073416316166 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51182578 chr22:51182577 synonymous SNV . 0 20 hm7G_associated_SNPs_38380 0 0 0 0 2 ACR chr22:51182489 3'AG 51182489 Downstream 89bp 35330 chr22 51182577 51182577 1 + C T COAD 51182578 + 51182558 51182598 41 CCCAGTGGTACAATGGGCGCGTTCAGCCAACCAATGTGTGC CCCAGTGGTACAATGGGCGTGTTCAGCCAACCAATGTGTGC < 41bp 0.520884863857943 0.721421572016026 NA NA prediction 0.401073416316166 Functional Gain - ACR ENSG00000100312 CDS Human protein_coding chr22:51182578 chr22:51182577 synonymous SNV . 0 20 hm7G_associated_SNPs_38380 0 0 0 0 2 ACR chr22:51182634 5'GT 51182634 Upstream 58bp 35331 chrX 54565501 54565501 1 + G A LUSC 54565502 + 54565482 54565522 41 AGCCAGGTGAAGGTTCCAAGGGCCACAAGAAGATAAGTTGG AGCCAGGTGAAGGTTCCAAAGGCCACAAGAAGATAAGTTGG < 41bp 0.530944191277476 0.731478224516812 NA NA prediction 0.401068066478671 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54565502 chrX:54565501 synonymous SNV . 0 20 hm7G_associated_SNPs_38383 0 0 1 1 2 GNL3L chrX:54565473 3'AG 54565473 Downstream 29bp 35332 chrX 54565501 54565501 1 + G A LUSC 54565502 + 54565482 54565522 41 AGCCAGGTGAAGGTTCCAAGGGCCACAAGAAGATAAGTTGG AGCCAGGTGAAGGTTCCAAAGGCCACAAGAAGATAAGTTGG < 41bp 0.530944191277476 0.731478224516812 NA NA prediction 0.401068066478671 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54565502 chrX:54565501 synonymous SNV . 0 20 hm7G_associated_SNPs_38383 0 0 1 1 2 GNL3L chrX:54565534 5'GT 54565534 Upstream 34bp 35333 chr9 131832593 131832593 1 + C T ESCA 131832594 + 131832574 131832614 41 CGCTACACGTCACTGCCCGCGCTGGCAGACGACATCCTGCA CGCTACACGTCACTGCCCGTGCTGGCAGACGACATCCTGCA < 41bp 0.507919207006439 0.70845138195681 NA NA prediction 0.401064349900741 Functional Gain - MIGA2 ENSG00000148343 CDS Human protein_coding chr9:131832594 chr9:131832593 nonsynonymous SNV 0.057 0 20 hm7G_associated_SNPs_38384 0 0 0 0 1 MIGA2 chr9:131832526 3'AG 131832526 Downstream 68bp 35334 chr14 105054627 105054627 1 + C T rs145751328 105054628 + 105054608 105054648 41 CAGACATTGCTGACAAGAACGCCACAGCCACTGTCAGGGGT CAGACATTGCTGACAAGAATGCCACAGCCACTGTCAGGGGT < 41bp 0.51356548834411 0.714097143572481 NA NA prediction 0.401063310456742 Functional Gain - C14orf180 ENSG00000184601 CDS Human protein_coding chr14:105054628 chr14:105054627 synonymous SNV . 0 20 hm7G_associated_SNPs_38385 0 0 0 0 2 C14orf180 chr14:105054611 3'AG 105054611 Downstream 17bp 35335 chr14 105054627 105054627 1 + C T rs145751328 105054628 + 105054608 105054648 41 CAGACATTGCTGACAAGAACGCCACAGCCACTGTCAGGGGT CAGACATTGCTGACAAGAATGCCACAGCCACTGTCAGGGGT < 41bp 0.51356548834411 0.714097143572481 NA NA prediction 0.401063310456742 Functional Gain - C14orf180 ENSG00000184601 CDS Human protein_coding chr14:105054628 chr14:105054627 synonymous SNV . 0 20 hm7G_associated_SNPs_38385 0 0 0 0 2 C14orf180 chr14:105054646 5'GT 105054646 Upstream 20bp 35336 chr17 15641636 15641636 1 + G T LUSC 15641637 + 15641617 15641657 41 CATTCCCCTGGCGGTACGGGGCCGGGCGTGGTCACTTTTGC CATTCCCCTGGCGGTACGGTGCCGGGCGTGGTCACTTTTGC < 41bp 0.346110335331328 0.700530442971677 NA NA prediction 0.401060885943354 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641637 chr17:15641636 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_38387 0 0 0 0 2 TBC1D26 chr17:15641594 3'AG 15641594 Downstream 43bp 35337 chr17 15641636 15641636 1 + G T LUSC 15641637 + 15641617 15641657 41 CATTCCCCTGGCGGTACGGGGCCGGGCGTGGTCACTTTTGC CATTCCCCTGGCGGTACGGTGCCGGGCGTGGTCACTTTTGC < 41bp 0.346110335331328 0.700530442971677 NA NA prediction 0.401060885943354 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15641637 chr17:15641636 nonsynonymous SNV 0.001 3 20 hm7G_associated_SNPs_38387 0 0 0 0 2 TBC1D26 chr17:15641701 5'GT 15641701 Upstream 66bp 35338 chr8 144803264 144803264 1 + C T SKCM 144803265 + 144803245 144803285 41 TGTGCCTGAGTACCGCAGCCGCGTCTATCAGGTGCTCCGGC TGTGCCTGAGTACCGCAGCTGCGTCTATCAGGTGCTCCGGC < 41bp 0.522593192792041 0.723123124912225 NA NA prediction 0.401059864240368 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144803265 chr8:144803264 nonsynonymous SNV 0.068 3 20 hm7G_associated_SNPs_38388 0 0 0 0 2 MAPK15 chr8:144803170 3'AG 144803170 Downstream 95bp 35339 chr8 144803264 144803264 1 + C T SKCM 144803265 + 144803245 144803285 41 TGTGCCTGAGTACCGCAGCCGCGTCTATCAGGTGCTCCGGC TGTGCCTGAGTACCGCAGCTGCGTCTATCAGGTGCTCCGGC < 41bp 0.522593192792041 0.723123124912225 NA NA prediction 0.401059864240368 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144803265 chr8:144803264 nonsynonymous SNV 0.068 3 20 hm7G_associated_SNPs_38388 0 0 0 0 2 MAPK15 chr8:144803275 5'GT 144803275 Upstream 12bp 35340 chr7 150698924 150698924 1 + C T UCEC 150698925 + 150698905 150698945 41 GCAGCGCCGTGAAGATCTCCGCCTCGCTCATGGGCACGGTG GCAGCGCCGTGAAGATCTCTGCCTCGCTCATGGGCACGGTG < 41bp 0.555791262701176 0.756320870544856 NA NA prediction 0.401059215687359 Functional Gain - NOS3 ENSG00000164867 CDS Human protein_coding chr7:150698925 chr7:150698924 synonymous SNV . 0 20 hm7G_associated_SNPs_38389 0 0 0 0 1 NOS3 chr7:150698909 3'AG 150698909 Downstream 16bp 35341 chr1 94930338 94930338 1 + G T rs142075958 94930339 + 94930319 94930359 41 TTTTTAATGCAGAAAGAGGGGAAAAAGGAGCGAGCTGTGGT TTTTTAATGCAGAAAGAGGTGAAAAAGGAGCGAGCTGTGGT < 41bp 0.68846452004912 0.888992317910835 NA NA prediction 0.40105559572343 Functional Gain - ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94930339 chr1:94930338 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_38391 0 0 1 0 2 ABCD3 chr1:94930331 3'AG 94930331 Downstream 8bp 35342 chr1 94930338 94930338 1 + G T rs142075958 94930339 + 94930319 94930359 41 TTTTTAATGCAGAAAGAGGGGAAAAAGGAGCGAGCTGTGGT TTTTTAATGCAGAAAGAGGTGAAAAAGGAGCGAGCTGTGGT < 41bp 0.68846452004912 0.888992317910835 NA NA prediction 0.40105559572343 Functional Gain - ABCD3 ENSG00000117528 CDS Human protein_coding chr1:94930339 chr1:94930338 nonsynonymous SNV 0.985 2 20 hm7G_associated_SNPs_38391 0 0 1 0 2 ABCD3 chr1:94930429 5'GT 94930429 Upstream 92bp 35343 chr17 53155450 53155450 1 + G T UCEC 53155451 + 53155431 53155471 41 CTGTGCAGGAAAGTGTTCAGGATTTAAAAAAGAGAATCATG CTGTGCAGGAAAGTGTTCATGATTTAAAAAAGAGAATCATG < 41bp 0.377820928680091 0.700527246077317 NA NA prediction 0.401054492154634 Functional Gain - STXBP4 ENSG00000166263 CDS Human protein_coding chr17:53155451 chr17:53155450 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_38392 0 0 1 0 1 STXBP4 chr17:53155439 3'AG 53155439 Downstream 12bp 35344 chr5 156671359 156671359 1 + C T GBM 156671360 + 156671340 156671380 41 TGTTTGAGTTCATGGAGCACGGCTGCCTGTCAGATTATCTA TGTTTGAGTTCATGGAGCATGGCTGCCTGTCAGATTATCTA < 41bp 0.550160084308938 0.750686112863295 NA NA prediction 0.401052057108714 Functional Gain - ITK ENSG00000113263 CDS Human protein_coding chr5:156671360 chr5:156671359 synonymous SNV . 0 20 hm7G_associated_SNPs_38394 0 0 0 0 1 ITK chr5:156671272 3'AG 156671272 Downstream 88bp 35345 chr21 45819200 45819200 1 + G A UCEC 45819201 + 45819181 45819221 41 GTCTTCACCGAGTGCTACCGGAAGGACGAAGAGAGAGCCCA GTCTTCACCGAGTGCTACCAGAAGGACGAAGAGAGAGCCCA < 41bp 0.53977516281263 0.740300056927713 NA NA prediction 0.401049788230165 Functional Gain - TRPM2 ENSG00000142185 CDS Human protein_coding chr21:45819201 chr21:45819200 nonsynonymous SNV 0.974 1 20 hm7G_associated_SNPs_38397 0 0 0 0 1 TRPM2 chr21:45819179 3'AG 45819179 Downstream 22bp 35346 chrX 70340906 70340906 1 + G T LUAD 70340907 + 70340887 70340927 41 CAGGGCCTGCAGGAAGTGGGGGCTGTGGTTCCACGATAGGG CAGGGCCTGCAGGAAGTGGTGGCTGTGGTTCCACGATAGGG < 41bp 0.350721143109975 0.700524791686649 NA NA prediction 0.401049583373299 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70340907 chrX:70340906 synonymous SNV . 0 20 hm7G_associated_SNPs_38398 0 0 1 0 2 MED12 chrX:70340821 3'AG 70340821 Downstream 86bp 35347 chrX 70340906 70340906 1 + G T LUAD 70340907 + 70340887 70340927 41 CAGGGCCTGCAGGAAGTGGGGGCTGTGGTTCCACGATAGGG CAGGGCCTGCAGGAAGTGGTGGCTGTGGTTCCACGATAGGG < 41bp 0.350721143109975 0.700524791686649 NA NA prediction 0.401049583373299 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70340907 chrX:70340906 synonymous SNV . 0 20 hm7G_associated_SNPs_38398 0 0 1 0 2 MED12 chrX:70341002 5'GT 70341002 Upstream 97bp 35348 chr16 2987340 2987340 1 + C T UCEC 2987341 + 2987321 2987361 41 GGGCGGCCTGGAGGCCCTGCGGCAGCGGGAGCACTTCCCCA GGGCGGCCTGGAGGCCCTGTGGCAGCGGGAGCACTTCCCCA < 41bp 0.517038894999622 0.717563196093676 NA NA prediction 0.401048602188108 Functional Gain - FLYWCH1 ENSG00000059122 CDS Human protein_coding chr16:2987341 chr16:2987340 nonsynonymous SNV 0.475 3 20 hm7G_associated_SNPs_38399 0 0 0 0 1 FLYWCH1 chr16:2987385 5'GT 2987385 Upstream 46bp 35349 chr2 204154519 204154519 1 + C T COAD 204154520 + 204154500 204154540 41 TGTGCTTTGTGAAACTGTTCGAACTGCCAAACTGACTCCAG TGTGCTTTGTGAAACTGTTTGAACTGCCAAACTGACTCCAG < 41bp 0.503279735850461 0.703803986482621 NA NA prediction 0.401048501264318 Functional Gain - CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204154520 chr2:204154519 stopgain 0.998 1 20 hm7G_associated_SNPs_38400 0 0 1 0 2 CYP20A1 chr2:204154488 3'AG 204154488 Downstream 32bp 35350 chr2 204154519 204154519 1 + C T COAD 204154520 + 204154500 204154540 41 TGTGCTTTGTGAAACTGTTCGAACTGCCAAACTGACTCCAG TGTGCTTTGTGAAACTGTTTGAACTGCCAAACTGACTCCAG < 41bp 0.503279735850461 0.703803986482621 NA NA prediction 0.401048501264318 Functional Gain - CYP20A1 ENSG00000119004 CDS Human protein_coding chr2:204154520 chr2:204154519 stopgain 0.998 1 20 hm7G_associated_SNPs_38400 0 0 1 0 2 CYP20A1 chr2:204154599 5'GT 204154599 Upstream 81bp 35351 chr10 105204355 105204355 1 + C T rs145418723 105204356 + 105204336 105204376 41 AAAGCCATTTTTGAGAACACGCTGAGCACCTACCCAAAGCG AAAGCCATTTTTGAGAACATGCTGAGCACCTACCCAAAGCG < 41bp 0.536877572204468 0.737399429170743 NA NA prediction 0.401043713932551 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105204356 chr10:105204355 nonsynonymous SNV 0.928 0 20 hm7G_associated_SNPs_38402 0 0 1 0 2 PDCD11 chr10:105204274 3'AG 105204274 Downstream 82bp 35352 chr10 105204355 105204355 1 + C T rs145418723 105204356 + 105204336 105204376 41 AAAGCCATTTTTGAGAACACGCTGAGCACCTACCCAAAGCG AAAGCCATTTTTGAGAACATGCTGAGCACCTACCCAAAGCG < 41bp 0.536877572204468 0.737399429170743 NA NA prediction 0.401043713932551 Functional Gain - PDCD11 ENSG00000148843 CDS Human protein_coding chr10:105204356 chr10:105204355 nonsynonymous SNV 0.928 0 20 hm7G_associated_SNPs_38402 0 0 1 0 2 PDCD11 chr10:105204439 5'GT 105204439 Upstream 85bp 35353 chr5 134041018 134041018 1 + C T UCEC 134041019 + 134040999 134041039 41 TGTGTATTTTCCCCAAAGGCGAAAGAAGAATTCGTGTTCAT TGTGTATTTTCCCCAAAGGTGAAAGAAGAATTCGTGTTCAT < 41bp 0.52939984434806 0.729921576613589 NA NA prediction 0.401043464531058 Functional Gain - SEC24A ENSG00000113615 CDS Human protein_coding chr5:134041019 chr5:134041018 synonymous SNV . 0 20 hm7G_associated_SNPs_38403 0 0 0 0 1 SEC24A chr5:134041017 3'AG 134041017 Downstream 2bp 35354 chr17 79429817 79429817 1 + C T CESC 79429818 + 79429798 79429838 41 GTTCTACAAGGCCATCGTGCGGGGCGAGGAGACCCTGCGTG GTTCTACAAGGCCATCGTGTGGGGCGAGGAGACCCTGCGTG < 41bp 0.523429496892827 0.723950208637191 NA NA prediction 0.401041423488729 Functional Gain - BAHCC1 ENSG00000171282 CDS Human other chr17:79429818 chr17:79429817 nonsynonymous SNV 0.991 3 20 hm7G_associated_SNPs_38405 0 0 1 0 1 BAHCC1 chr17:79429766 3'AG 79429766 Downstream 52bp 35355 chr12 50452585 50452585 1 + C T UCEC 50452586 + 50452566 50452606 41 AGGAGGAGGAGGTGGGTGGCGTCCAGCCGGTGAGCATCCAG AGGAGGAGGAGGTGGGTGGTGTCCAGCCGGTGAGCATCCAG < 41bp 0.530861819776321 0.731382262042574 NA NA prediction 0.401040884532507 Functional Gain - ASIC1 ENSG00000110881 CDS Human protein_coding chr12:50452586 chr12:50452585 synonymous SNV . 0 20 hm7G_associated_SNPs_38406 0 0 1 0 1 ASIC1 chr12:50452534 3'AG 50452534 Downstream 52bp 35356 chr2 99155399 99155399 1 + C T STAD 99155400 + 99155380 99155420 41 GACGGAGGCGTTAGGAATCCGATCCAAATACGCTTCATTGC GACGGAGGCGTTAGGAATCTGATCCAAATACGCTTCATTGC < 41bp 0.487527535861684 0.70051960071644 NA NA prediction 0.40103920143288 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99155400 chr2:99155399 stopgain 0.999 1 20 hm7G_associated_SNPs_38407 0 0 1 0 2 INPP4A chr2:99155354 3'AG 99155354 Downstream 46bp 35357 chr2 99155399 99155399 1 + C T STAD 99155400 + 99155380 99155420 41 GACGGAGGCGTTAGGAATCCGATCCAAATACGCTTCATTGC GACGGAGGCGTTAGGAATCTGATCCAAATACGCTTCATTGC < 41bp 0.487527535861684 0.70051960071644 NA NA prediction 0.40103920143288 Functional Gain - INPP4A ENSG00000040933 CDS Human protein_coding chr2:99155400 chr2:99155399 stopgain 0.999 1 20 hm7G_associated_SNPs_38407 0 0 1 0 2 INPP4A chr2:99155444 5'GT 99155444 Upstream 46bp 35358 chr19 33651350 33651350 1 + G T UCEC 33651351 + 33651331 33651371 41 ATTTCTGGAGGGTTTGATAGGACTGTGGCTATTTGGGATGT ATTTCTGGAGGGTTTGATATGACTGTGGCTATTTGGGATGT < 41bp 0.704272956226926 0.904790272273467 NA NA prediction 0.401034632093081 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651351 chr19:33651350 nonsynonymous SNV 0.918 2 20 hm7G_associated_SNPs_38408 0 0 0 0 2 WDR88 chr19:33651320 3'AG 33651320 Downstream 31bp 35359 chr19 33651350 33651350 1 + G T UCEC 33651351 + 33651331 33651371 41 ATTTCTGGAGGGTTTGATAGGACTGTGGCTATTTGGGATGT ATTTCTGGAGGGTTTGATATGACTGTGGCTATTTGGGATGT < 41bp 0.704272956226926 0.904790272273467 NA NA prediction 0.401034632093081 Functional Gain - WDR88 ENSG00000166359 CDS Human protein_coding chr19:33651351 chr19:33651350 nonsynonymous SNV 0.918 2 20 hm7G_associated_SNPs_38408 0 0 0 0 2 WDR88 chr19:33651402 5'GT 33651402 Upstream 53bp 35360 chr3 121659299 121659299 1 + C T CESC 121659300 + 121659280 121659320 41 TTGCAGTTGGGAATATCATCGTGCTTGTTGTGGCACAGTTC TTGCAGTTGGGAATATCATTGTGCTTGTTGTGGCACAGTTC < 41bp 0.505229991649312 0.705747111804043 NA NA prediction 0.401034240309461 Functional Gain - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121659300 chr3:121659299 synonymous SNV . 0 20 hm7G_associated_SNPs_38409 0 0 0 0 2 SLC15A2 chr3:121659231 3'AG 121659231 Downstream 69bp 35361 chr3 121659299 121659299 1 + C T CESC 121659300 + 121659280 121659320 41 TTGCAGTTGGGAATATCATCGTGCTTGTTGTGGCACAGTTC TTGCAGTTGGGAATATCATTGTGCTTGTTGTGGCACAGTTC < 41bp 0.505229991649312 0.705747111804043 NA NA prediction 0.401034240309461 Functional Gain - SLC15A2 ENSG00000163406 CDS Human protein_coding chr3:121659300 chr3:121659299 synonymous SNV . 0 20 hm7G_associated_SNPs_38409 0 0 0 0 2 SLC15A2 chr3:121659335 5'GT 121659335 Upstream 37bp 35362 chr11 93803617 93803617 1 + C T rs12291622 93803618 + 93803598 93803638 41 GATGAAGGGTCAACAGAGGCGCTACTTTATAGCAGCTGAAA GATGAAGGGTCAACAGAGGTGCTACTTTATAGCAGCTGAAA < 41bp 0.533582161166829 0.734097453588876 NA NA prediction 0.401030584844094 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93803618 chr11:93803617 nonsynonymous SNV 0.651 3 20 hm7G_associated_SNPs_38410 0 0 0 0 2 HEPHL1 chr11:93803540 3'AG 93803540 Downstream 78bp 35363 chr11 93803617 93803617 1 + C T rs12291622 93803618 + 93803598 93803638 41 GATGAAGGGTCAACAGAGGCGCTACTTTATAGCAGCTGAAA GATGAAGGGTCAACAGAGGTGCTACTTTATAGCAGCTGAAA < 41bp 0.533582161166829 0.734097453588876 NA NA prediction 0.401030584844094 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93803618 chr11:93803617 nonsynonymous SNV 0.651 3 20 hm7G_associated_SNPs_38410 0 0 0 0 2 HEPHL1 chr11:93803708 5'GT 93803708 Upstream 92bp 35364 chr17 40837035 40837035 1 + G A GBM 40837036 + 40837016 40837056 41 TTGGTAACGTGAACGAGTCGGCGGTGGTGCGCCATGACCTG TTGGTAACGTGAACGAGTCAGCGGTGGTGCGCCATGACCTG < 41bp 0.482097623822975 0.700513967271277 NA NA prediction 0.401027934542554 Functional Gain - CNTNAP1 ENSG00000108797 CDS Human protein_coding chr17:40837036 chr17:40837035 synonymous SNV . 0 20 hm7G_associated_SNPs_38412 0 0 0 0 1 CNTNAP1 chr17:40837009 3'AG 40837009 Downstream 27bp 35365 chr1 2103575 2103575 1 + C T BLCA 2103576 + 2103556 2103596 41 GGGACCTGAAGCTGGACAACGTCCTCCTGGATGCGGACGGG GGGACCTGAAGCTGGACAATGTCCTCCTGGATGCGGACGGG < 41bp 0.518607897813646 0.719121133045733 NA NA prediction 0.401026470464175 Functional Gain - PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2103576 chr1:2103575 synonymous SNV . 0 20 hm7G_associated_SNPs_38413 0 0 1 0 2 PRKCZ chr1:2103494 3'AG 2103494 Downstream 82bp 35366 chr1 2103575 2103575 1 + C T BLCA 2103576 + 2103556 2103596 41 GGGACCTGAAGCTGGACAACGTCCTCCTGGATGCGGACGGG GGGACCTGAAGCTGGACAATGTCCTCCTGGATGCGGACGGG < 41bp 0.518607897813646 0.719121133045733 NA NA prediction 0.401026470464175 Functional Gain - PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2103576 chr1:2103575 synonymous SNV . 0 20 hm7G_associated_SNPs_38413 0 0 1 0 2 PRKCZ chr1:2103629 5'GT 2103629 Upstream 55bp 35367 chr3 179336219 179336219 1 + G T LUAD 179336220 + 179336200 179336240 41 TAGCATCCCATATCAAGATGGATTGCCCGTAATTTCTATGA TAGCATCCCATATCAAGATTGATTGCCCGTAATTTCTATGA < 41bp 0.393355629306895 0.700512893039538 NA NA prediction 0.401025786079076 Functional Gain - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179336220 chr3:179336219 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_38414 0 0 1 2 2 NDUFB5 chr3:179336203 3'AG 179336203 Downstream 17bp 35368 chr3 179336219 179336219 1 + G T LUAD 179336220 + 179336200 179336240 41 TAGCATCCCATATCAAGATGGATTGCCCGTAATTTCTATGA TAGCATCCCATATCAAGATTGATTGCCCGTAATTTCTATGA < 41bp 0.393355629306895 0.700512893039538 NA NA prediction 0.401025786079076 Functional Gain - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179336220 chr3:179336219 nonsynonymous SNV 0.978 4 20 hm7G_associated_SNPs_38414 0 0 1 2 2 NDUFB5 chr3:179336309 5'GT 179336309 Upstream 91bp 35369 chr17 66339821 66339821 1 + C T SKCM 66339822 + 66339802 66339842 41 CACCGGCCGGCTTGGCCTTCGCAATGGAGTCACACGCAACT CACCGGCCGGCTTGGCCTTTGCAATGGAGTCACACGCAACT < 41bp 0.560123288309968 0.760636035559985 NA NA prediction 0.401025494500033 Functional Gain - ARSG ENSG00000141337 CDS Human protein_coding chr17:66339822 chr17:66339821 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_38415 0 0 0 0 1 ARSG chr17:66339745 3'AG 66339745 Downstream 77bp 35370 chr4 15542572 15542572 1 + C T UCEC 15542573 + 15542553 15542593 41 GCCACTAGGAGCAGACTTCCGAGTTCACTTTGGGCAGATTT GCCACTAGGAGCAGACTTCTGAGTTCACTTTGGGCAGATTT < 41bp 0.48613638947383 0.70051047115171 NA NA prediction 0.401020942303421 Functional Gain - CC2D2A ENSG00000048342 CDS Human protein_coding chr4:15542573 chr4:15542572 stopgain 0.998 1 20 hm7G_associated_SNPs_38419 0 0 0 0 1 CC2D2A chr4:15542637 5'GT 15542637 Upstream 66bp 35371 chr16 22144298 22144298 1 + C T UCEC 22144299 + 22144279 22144319 41 TGTGTCTCTTCTACGTGGGCGAGCCAAAGATGGACACCACA TGTGTCTCTTCTACGTGGGTGAGCCAAAGATGGACACCACA < 41bp 0.559917965709641 0.760426172046425 NA NA prediction 0.401016412673568 Functional Gain - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22144299 chr16:22144298 synonymous SNV . 0 20 hm7G_associated_SNPs_38423 0 0 0 0 1 VWA3A chr16:22144221 3'AG 22144221 Downstream 78bp 35372 chr15 74000768 74000768 1 + C T GBM 74000769 + 74000749 74000789 41 TGCTGGTGGCCCTGGCTTTCGTGTGCTGGAGAAAGATCAAA TGCTGGTGGCCCTGGCTTTTGTGTGCTGGAGAAAGATCAAA < 41bp 0.490572632577213 0.700508103831513 NA NA prediction 0.401016207663025 Functional Gain - CD276 ENSG00000103855 CDS Human protein_coding chr15:74000769 chr15:74000768 synonymous SNV . 0 20 hm7G_associated_SNPs_38424 0 0 1 0 2 CD276 chr15:74000680 3'AG 74000680 Downstream 89bp 35373 chr15 74000768 74000768 1 + C T GBM 74000769 + 74000749 74000789 41 TGCTGGTGGCCCTGGCTTTCGTGTGCTGGAGAAAGATCAAA TGCTGGTGGCCCTGGCTTTTGTGTGCTGGAGAAAGATCAAA < 41bp 0.490572632577213 0.700508103831513 NA NA prediction 0.401016207663025 Functional Gain - CD276 ENSG00000103855 CDS Human protein_coding chr15:74000769 chr15:74000768 synonymous SNV . 0 20 hm7G_associated_SNPs_38424 0 0 1 0 2 CD276 chr15:74000814 5'GT 74000814 Upstream 47bp 35374 chr19 14162972 14162972 1 + C T UCEC 14162973 + 14162953 14162993 41 GTGGAGGAGATGGAGCCCCCGCCGGTTATGGAGTCCTCCCA GTGGAGGAGATGGAGCCCCTGCCGGTTATGGAGTCCTCCCA < 41bp 0.508173204385037 0.708680393982823 NA NA prediction 0.401014379195572 Functional Gain - IL27RA ENSG00000104998 CDS Human protein_coding chr19:14162973 chr19:14162972 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_38426 0 0 0 0 1 IL27RA chr19:14162908 3'AG 14162908 Downstream 65bp 35375 chr11 58377419 58377419 1 + C T UCEC 58377420 + 58377400 58377440 41 GACATCTGTTTCTCGCCATCGTGATACAGAGAACACCCGAA GACATCTGTTTCTCGCCATTGTGATACAGAGAACACCCGAA < 41bp 0.495011869291871 0.700506300309841 NA NA prediction 0.401012600619682 Functional Gain - ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58377420 chr11:58377419 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_38427 0 0 1 0 1 ZFP91 chr11:58377512 5'GT 58377512 Upstream 94bp 35376 chr15 41148248 41148248 1 + C T UCEC 41148249 + 41148229 41148269 41 GCAGTGCCTCGAGTCTTGTCGCGGCATCTCCAGTGAGTGGG GCAGTGCCTCGAGTCTTGTTGCGGCATCTCCAGTGAGTGGG < 41bp 0.544629593166796 0.745135662186807 NA NA prediction 0.401012138040021 Functional Gain - SPINT1 ENSG00000166145 CDS Human protein_coding chr15:41148249 chr15:41148248 nonsynonymous SNV 0.633 2 20 hm7G_associated_SNPs_38428 0 0 0 0 1 SPINT1 chr15:41148260 5'GT 41148260 Upstream 13bp 35377 chr12 108604021 108604021 1 + C T COAD 108604022 + 108604002 108604042 41 GCGAGCGAGGCAGCGTGTGCGGCGGCGCCAACCGCCTCTCT GCGAGCGAGGCAGCGTGTGTGGCGGCGCCAACCGCCTCTCT < 41bp 0.543227681935207 0.743733451363187 NA NA prediction 0.40101153885596 Functional Gain - WSCD2 ENSG00000075035 CDS Human protein_coding chr12:108604022 chr12:108604021 synonymous SNV . 0 20 hm7G_associated_SNPs_38429 0 0 0 0 1 WSCD2 chr12:108604082 5'GT 108604082 Upstream 62bp 35378 chr20 25199209 25199209 1 + C T COAD 25199210 + 25199190 25199230 41 CTCGGGCTCGGGCTGATGTCGGCACGCCTGGCGATCCTGGG CTCGGGCTCGGGCTGATGTTGGCACGCCTGGCGATCCTGGG < 41bp 0.518110314275109 0.718614436501917 NA NA prediction 0.401008244453617 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25199210 chr20:25199209 nonsynonymous SNV 0.951 3 20 hm7G_associated_SNPs_38431 0 0 1 0 2 ENTPD6 chr20:25199186 3'AG 25199186 Downstream 24bp 35379 chr20 25199209 25199209 1 + C T COAD 25199210 + 25199190 25199230 41 CTCGGGCTCGGGCTGATGTCGGCACGCCTGGCGATCCTGGG CTCGGGCTCGGGCTGATGTTGGCACGCCTGGCGATCCTGGG < 41bp 0.518110314275109 0.718614436501917 NA NA prediction 0.401008244453617 Functional Gain - ENTPD6 ENSG00000197586 CDS Human protein_coding chr20:25199210 chr20:25199209 nonsynonymous SNV 0.951 3 20 hm7G_associated_SNPs_38431 0 0 1 0 2 ENTPD6 chr20:25199250 5'GT 25199250 Upstream 42bp 35380 chr3 11076338 11076338 1 + G T UCEC 11076339 + 11076319 11076359 41 TCCATGGTCCTCATCCCCGGGTACATGGCCTACATGTTCCT TCCATGGTCCTCATCCCCGTGTACATGGCCTACATGTTCCT < 41bp 0.360900100280008 0.700503249045717 NA NA prediction 0.401006498091435 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11076339 chr3:11076338 nonsynonymous SNV 0.958 3 20 hm7G_associated_SNPs_38433 0 0 0 0 1 SLC6A1 chr3:11076384 5'GT 11076384 Upstream 47bp 35381 chr16 57734101 57734101 1 + C T LUAD 57734102 + 57734082 57734122 41 CCACACTGATGCCCTACCCCGAGCTCTACAACTGGGACAGC CCACACTGATGCCCTACCCTGAGCTCTACAACTGGGACAGC < 41bp 0.555128792045789 0.755629287493485 NA NA prediction 0.401000990895392 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57734102 chr16:57734101 synonymous SNV . 0 20 hm7G_associated_SNPs_38435 0 0 0 0 2 DRC7 chr16:57734057 3'AG 57734057 Downstream 45bp 35382 chr16 57734101 57734101 1 + C T LUAD 57734102 + 57734082 57734122 41 CCACACTGATGCCCTACCCCGAGCTCTACAACTGGGACAGC CCACACTGATGCCCTACCCTGAGCTCTACAACTGGGACAGC < 41bp 0.555128792045789 0.755629287493485 NA NA prediction 0.401000990895392 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57734102 chr16:57734101 synonymous SNV . 0 20 hm7G_associated_SNPs_38435 0 0 0 0 2 DRC7 chr16:57734182 5'GT 57734182 Upstream 82bp 35383 chr1 23222908 23222908 1 + C T BLCA 23222909 + 23222889 23222929 41 TTGCTCTTGTTCCAGAAGACGGGGGTTTGAGCGTGCTGACT TTGCTCTTGTTCCAGAAGATGGGGGTTTGAGCGTGCTGACT < 41bp 0.48511840260047 0.700500314095488 NA NA prediction 0.401000628190976 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23222909 chr1:23222908 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38437 0 0 0 0 3 EPHB2 chr1:23222904 3'AG 23222904 Downstream 5bp 35384 chr1 23222908 23222908 1 + C T BLCA 23222909 + 23222889 23222929 41 TTGCTCTTGTTCCAGAAGACGGGGGTTTGAGCGTGCTGACT TTGCTCTTGTTCCAGAAGATGGGGGTTTGAGCGTGCTGACT < 41bp 0.48511840260047 0.700500314095488 NA NA prediction 0.401000628190976 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23222909 chr1:23222908 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38437 0 0 0 0 3 EPHB2 chr1:23222907 3'AG 23222907 Downstream 2bp 35385 chr1 23222908 23222908 1 + C T BLCA 23222909 + 23222889 23222929 41 TTGCTCTTGTTCCAGAAGACGGGGGTTTGAGCGTGCTGACT TTGCTCTTGTTCCAGAAGATGGGGGTTTGAGCGTGCTGACT < 41bp 0.48511840260047 0.700500314095488 NA NA prediction 0.401000628190976 Functional Gain - EPHB2 ENSG00000133216 CDS Human protein_coding chr1:23222909 chr1:23222908 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38437 0 0 0 0 3 EPHB2 chr1:23222971 5'GT 23222971 Upstream 64bp 35386 chr16 10989620 10989620 1 + C T UCEC 10989621 + 10989601 10989641 41 GGGAGGCTTATGCCAATATCGGTGAGGAAGCACCTGAGCCC GGGAGGCTTATGCCAATATTGGTGAGGAAGCACCTGAGCCC < 41bp 0.528833465135926 0.729333281241637 NA NA prediction 0.400999632211423 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10989621 chr16:10989620 synonymous SNV . 0 20 hm7G_associated_SNPs_38438 1 0 0 0 2 CIITA chr16:10989526 3'AG 10989526 Downstream 95bp 35387 chr16 10989620 10989620 1 + C T UCEC 10989621 + 10989601 10989641 41 GGGAGGCTTATGCCAATATCGGTGAGGAAGCACCTGAGCCC GGGAGGCTTATGCCAATATTGGTGAGGAAGCACCTGAGCCC < 41bp 0.528833465135926 0.729333281241637 NA NA prediction 0.400999632211423 Functional Gain - CIITA ENSG00000179583 CDS Human protein_coding chr16:10989621 chr16:10989620 synonymous SNV . 0 20 hm7G_associated_SNPs_38438 1 0 0 0 2 CIITA chr16:10989621 5'GT 10989621 Upstream 2bp 35388 chr3 9956182 9956182 1 + G A rs548679080 9956183 + 9956163 9956203 41 ATGCTTCACTCAGCTCCCCGGGAGGAGAAGATGCCTGGCTC ATGCTTCACTCAGCTCCCCAGGAGGAGAAGATGCCTGGCTC < 41bp 0.475576153220452 0.700499803772953 NA NA prediction 0.400999607545906 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9956183 chr3:9956182 synonymous SNV . 0 20 hm7G_associated_SNPs_38439 0 0 0 0 2 IL17RE chr3:9956086 3'AG 9956086 Downstream 97bp 35389 chr3 9956182 9956182 1 + G A rs548679080 9956183 + 9956163 9956203 41 ATGCTTCACTCAGCTCCCCGGGAGGAGAAGATGCCTGGCTC ATGCTTCACTCAGCTCCCCAGGAGGAGAAGATGCCTGGCTC < 41bp 0.475576153220452 0.700499803772953 NA NA prediction 0.400999607545906 Functional Gain - IL17RE ENSG00000163701 CDS Human protein_coding chr3:9956183 chr3:9956182 synonymous SNV . 0 20 hm7G_associated_SNPs_38439 0 0 0 0 2 IL17RE chr3:9956159 3'AG 9956159 Downstream 24bp 35390 chr11 70011580 70011580 1 + C T LGG 70011581 + 70011561 70011601 41 GCTCTCTGTCCACAGTGTGCGCCAGGGGGCTGCCTGATGGA GCTCTCTGTCCACAGTGTGTGCCAGGGGGCTGCCTGATGGA < 41bp 0.539977315481114 0.740475417210907 NA NA prediction 0.400996203459586 Functional Gain - ANO1 ENSG00000131620 CDS Human protein_coding chr11:70011581 chr11:70011580 nonsynonymous SNV 0.089 2 20 hm7G_associated_SNPs_38440 0 0 0 0 1 ANO1 chr11:70011676 5'GT 70011676 Upstream 97bp 35391 chr11 134239724 134239724 1 + C T CESC 134239725 + 134239705 134239745 41 ATGCTGTGCTGACAGAAGCCGGCGATTACACGGCCAAGTAC ATGCTGTGCTGACAGAAGCTGGCGATTACACGGCCAAGTAC < 41bp 0.544902057310955 0.745399796716762 NA NA prediction 0.400995478811613 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134239725 chr11:134239724 synonymous SNV . 0 20 hm7G_associated_SNPs_38441 0 0 0 0 2 GLB1L2 chr11:134239699 3'AG 134239699 Downstream 26bp 35392 chr11 134239724 134239724 1 + C T CESC 134239725 + 134239705 134239745 41 ATGCTGTGCTGACAGAAGCCGGCGATTACACGGCCAAGTAC ATGCTGTGCTGACAGAAGCTGGCGATTACACGGCCAAGTAC < 41bp 0.544902057310955 0.745399796716762 NA NA prediction 0.400995478811613 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134239725 chr11:134239724 synonymous SNV . 0 20 hm7G_associated_SNPs_38441 0 0 0 0 2 GLB1L2 chr11:134239779 5'GT 134239779 Upstream 56bp 35393 chr8 136594219 136594219 1 + G A UCEC 136594220 + 136594200 136594240 41 ACCCGAGGGCCAGTGAGTCGGGGAAGAGGACTTCTCACTCC ACCCGAGGGCCAGTGAGTCAGGGAAGAGGACTTCTCACTCC < 41bp 0.563706677551333 0.764202814499494 NA NA prediction 0.400992273896321 Functional Gain - KHDRBS3 ENSG00000131773 CDS Human protein_coding chr8:136594220 chr8:136594219 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_38442 0 0 1 0 1 KHDRBS3 chr8:136594316 5'GT 136594316 Upstream 98bp 35394 chr12 7025618 7025618 1 + G A STAD 7025619 + 7025599 7025639 41 TGCCCAGTGGAGCCTCTACGGGCATCTATGAGGCCCTGGAG TGCCCAGTGGAGCCTCTACAGGCATCTATGAGGCCCTGGAG < 41bp 0.584509887540649 0.78500555249499 NA NA prediction 0.400991329908682 Functional Gain - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7025619 chr12:7025618 synonymous SNV . 0 20 hm7G_associated_SNPs_38443 0 0 1 0 2 ENO2 chr12:7025581 3'AG 7025581 Downstream 38bp 35395 chr12 7025618 7025618 1 + G A STAD 7025619 + 7025599 7025639 41 TGCCCAGTGGAGCCTCTACGGGCATCTATGAGGCCCTGGAG TGCCCAGTGGAGCCTCTACAGGCATCTATGAGGCCCTGGAG < 41bp 0.584509887540649 0.78500555249499 NA NA prediction 0.400991329908682 Functional Gain - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7025619 chr12:7025618 synonymous SNV . 0 20 hm7G_associated_SNPs_38443 0 0 1 0 2 ENO2 chr12:7025676 5'GT 7025676 Upstream 59bp 35396 chr16 4702754 4702754 1 + C T READ 4702755 + 4702735 4702775 41 ACAGCCTGGAGTTCACCTTCGACGCCGATGCCCGCGTGGCC ACAGCCTGGAGTTCACCTTTGACGCCGATGCCCGCGTGGCC < 41bp 0.547169863895257 0.747664852412522 NA NA prediction 0.40098997703453 Functional Gain - MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4702755 chr16:4702754 synonymous SNV . 0 20 hm7G_associated_SNPs_38445 0 0 1 0 1 MGRN1 chr16:4702679 3'AG 4702679 Downstream 76bp 35397 chr9 124535703 124535703 1 + C T COAD 124535704 + 124535684 124535724 41 TTGGGTGGGCCCCAGTACCCGCCTGAGGCAGCAGTCCTCTT TTGGGTGGGCCCCAGTACCTGCCTGAGGCAGCAGTCCTCTT < 41bp 0.493107093997419 0.700493970009643 NA NA prediction 0.400987940019286 Functional Gain - DAB2IP ENSG00000136848 CDS Human protein_coding chr9:124535704 chr9:124535703 nonsynonymous SNV 0.683 3 20 hm7G_associated_SNPs_38446 0 0 0 0 1 DAB2IP chr9:124535774 5'GT 124535774 Upstream 72bp 35398 chrX 130220322 130220322 1 + G T UCEC 130220323 + 130220303 130220343 41 GTGCCTCCCCATATTCAGAGGCAGGTTGCTAAGCGCGTGTG GTGCCTCCCCATATTCAGATGCAGGTTGCTAAGCGCGTGTG < 41bp 0.713584268720184 0.914076740027713 NA NA prediction 0.400984942615058 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220323 chrX:130220322 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_38447 0 0 0 0 2 ARHGAP36 chrX:130220303 3'AG 130220303 Downstream 20bp 35399 chrX 130220322 130220322 1 + G T UCEC 130220323 + 130220303 130220343 41 GTGCCTCCCCATATTCAGAGGCAGGTTGCTAAGCGCGTGTG GTGCCTCCCCATATTCAGATGCAGGTTGCTAAGCGCGTGTG < 41bp 0.713584268720184 0.914076740027713 NA NA prediction 0.400984942615058 Functional Gain - ARHGAP36 ENSG00000147256 CDS Human protein_coding chrX:130220323 chrX:130220322 nonsynonymous SNV 0.988 0 20 hm7G_associated_SNPs_38447 0 0 0 0 2 ARHGAP36 chrX:130220400 5'GT 130220400 Upstream 79bp 35400 chr21 43962568 43962568 1 + G A LUSC 43962569 + 43962549 43962589 41 CAGCGTCGTCACCTGCCTCGGCAACTGGTTTGGAAAAGGAA CAGCGTCGTCACCTGCCTCAGCAACTGGTTTGGAAAAGGAA < 41bp 0.585111820445046 0.785603365208771 NA NA prediction 0.40098308952745 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43962569 chr21:43962568 nonsynonymous SNV 0.961 0 20 hm7G_associated_SNPs_38448 0 0 0 0 2 SLC37A1 chr21:43962514 3'AG 43962514 Downstream 55bp 35401 chr21 43962568 43962568 1 + G A LUSC 43962569 + 43962549 43962589 41 CAGCGTCGTCACCTGCCTCGGCAACTGGTTTGGAAAAGGAA CAGCGTCGTCACCTGCCTCAGCAACTGGTTTGGAAAAGGAA < 41bp 0.585111820445046 0.785603365208771 NA NA prediction 0.40098308952745 Functional Gain - SLC37A1 ENSG00000160190 CDS Human protein_coding chr21:43962569 chr21:43962568 nonsynonymous SNV 0.961 0 20 hm7G_associated_SNPs_38448 0 0 0 0 2 SLC37A1 chr21:43962590 5'GT 43962590 Upstream 23bp 35402 chr1 104116893 104116893 1 + G T LUAD 104116894 + 104116874 104116914 41 TCTACTAGGTAATTGATCTGGGTGGTGAGCCAATTAAAAGC TCTACTAGGTAATTGATCTTGGTGGTGAGCCAATTAAAAGC < 41bp 0.371596055228713 0.700489408541782 NA NA prediction 0.400978817083564 Functional Gain - AMY2B ENSG00000240038 CDS Human protein_coding chr1:104116894 chr1:104116893 synonymous SNV . 0 20 hm7G_associated_SNPs_38450 0 0 0 0 1 AMY2B chr1:104116882 3'AG 104116882 Downstream 12bp 35403 chr8 144804021 144804021 1 + G A TGCT 144804022 + 144804002 144804042 41 GGGTGACTGGAACCGGGGCGGTGGGGTGAGGGTGGCCAGCG GGGTGACTGGAACCGGGGCAGTGGGGTGAGGGTGGCCAGCG < 41bp 0.56436373932135 0.764850527485754 NA NA prediction 0.400973576328808 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144804022 chr8:144804021 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_38452 0 0 1 0 2 MAPK15 chr8:144803922 3'AG 144803922 Downstream 100bp 35404 chr8 144804021 144804021 1 + G A TGCT 144804022 + 144804002 144804042 41 GGGTGACTGGAACCGGGGCGGTGGGGTGAGGGTGGCCAGCG GGGTGACTGGAACCGGGGCAGTGGGGTGAGGGTGGCCAGCG < 41bp 0.56436373932135 0.764850527485754 NA NA prediction 0.400973576328808 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144804022 chr8:144804021 nonsynonymous SNV 0.001 0 20 hm7G_associated_SNPs_38452 0 0 1 0 2 MAPK15 chr8:144804050 5'GT 144804050 Upstream 30bp 35405 chr16 29845334 29845334 1 + G A rs370201976 29845335 + 29845315 29845355 41 AGGCAGAACCAGGCTCTGCGGCTCAGGGCCCGCAAGGAGTG AGGCAGAACCAGGCTCTGCAGCTCAGGGCCCGCAAGGAGTG < 41bp 0.589089195606035 0.789575445265425 NA NA prediction 0.40097249931878 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29845335 chr16:29845334 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_38453 0 0 1 0 2 MVP chr16:29845256 3'AG 29845256 Downstream 79bp 35406 chr16 29845334 29845334 1 + G A rs370201976 29845335 + 29845315 29845355 41 AGGCAGAACCAGGCTCTGCGGCTCAGGGCCCGCAAGGAGTG AGGCAGAACCAGGCTCTGCAGCTCAGGGCCCGCAAGGAGTG < 41bp 0.589089195606035 0.789575445265425 NA NA prediction 0.40097249931878 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29845335 chr16:29845334 nonsynonymous SNV 0.976 3 20 hm7G_associated_SNPs_38453 0 0 1 0 2 MVP chr16:29845387 5'GT 29845387 Upstream 54bp 35407 chr5 5239326 5239326 1 + C T COAD 5239327 + 5239307 5239347 41 ACGTCTGTGGGGTGTGTAACGGGAATAACTCAGCCTGCACG ACGTCTGTGGGGTGTGTAATGGGAATAACTCAGCCTGCACG < 41bp 0.570635673431699 0.771121511741007 NA NA prediction 0.400971676618615 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5239327 chr5:5239326 synonymous SNV . 0 20 hm7G_associated_SNPs_38454 0 0 0 0 1 ADAMTS16 chr5:5239264 3'AG 5239264 Downstream 63bp 35408 chr3 113517174 113517174 1 + C T COAD 113517175 + 113517155 113517195 41 CAGCTACAGCAAGTATATGCGTGCCTTGGATGAATACTATG CAGCTACAGCAAGTATATGTGTGCCTTGGATGAATACTATG < 41bp 0.495944829685707 0.700485200845436 NA NA prediction 0.400970401690872 Functional Gain - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113517175 chr3:113517174 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_38456 0 0 1 0 1 ATP6V1A chr3:113517090 3'AG 113517090 Downstream 85bp 35409 chr3 184294942 184294942 1 + C T UCEC 184294943 + 184294923 184294963 41 CCTCTGCCGCCTCGTTATGCGGCCGTGAATATCACCACAAA CCTCTGCCGCCTCGTTATGTGGCCGTGAATATCACCACAAA < 41bp 0.537722951142988 0.738206315815077 NA NA prediction 0.400966729344177 Functional Gain - EPHB3 ENSG00000182580 CDS Human protein_coding chr3:184294943 chr3:184294942 nonsynonymous SNV 0.278 0 20 hm7G_associated_SNPs_38457 0 0 0 0 1 EPHB3 chr3:184294971 5'GT 184294971 Upstream 30bp 35410 chr8 55047893 55047893 1 + G A rs200980911 55047894 + 55047874 55047914 41 CGGGCCCTGGACCTACTCCGGGGCCTGCCGCGTGTGAGCCT CGGGCCCTGGACCTACTCCAGGGCCTGCCGCGTGTGAGCCT < 41bp 0.567066767083032 0.767547471694759 NA NA prediction 0.400961409223454 Functional Gain - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55047894 chr8:55047893 nonsynonymous SNV 0.675 3 20 hm7G_associated_SNPs_38458 0 0 1 0 1 MRPL15 chr8:55047951 5'GT 55047951 Upstream 59bp 35411 chr2 219677330 219677330 1 + C T UCEC 219677331 + 219677311 219677351 41 GCCTGCAGCGATCCATCCCCGAGGACACCGTGACCTTCGTC GCCTGCAGCGATCCATCCCTGAGGACACCGTGACCTTCGTC < 41bp 0.542247208393181 0.742726758973038 NA NA prediction 0.400959101159713 Functional Gain - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677331 chr2:219677330 synonymous SNV . 0 20 hm7G_associated_SNPs_38459 0 0 1 0 1 CYP27A1 chr2:219677275 3'AG 219677275 Downstream 56bp 35412 chr19 16973238 16973238 1 + C T rs150062565 16973239 + 16973219 16973259 41 CCTTCGCGCCACCCATGAGCGACAGATCCGGGGACGGGATA CCTTCGCGCCACCCATGAGTGACAGATCCGGGGACGGGATA < 41bp 0.575567349742076 0.776046518834069 NA NA prediction 0.400958338183987 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16973239 chr19:16973238 synonymous SNV . 0 20 hm7G_associated_SNPs_38460 0 0 1 0 1 SIN3B chr19:16973163 3'AG 16973163 Downstream 76bp 35413 chr19 6848067 6848067 1 + G A SKCM 6848068 + 6848048 6848088 41 CCTGGCCAACCGCTCGGACGGGACTTTCTTGGTGCGGCAGA CCTGGCCAACCGCTCGGACAGGACTTTCTTGGTGCGGCAGA < 41bp 0.580845505953563 0.78132224952794 NA NA prediction 0.400953487148754 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6848068 chr19:6848067 nonsynonymous SNV 0.890 3 20 hm7G_associated_SNPs_38462 0 0 0 0 2 VAV1 chr19:6848009 3'AG 6848009 Downstream 59bp 35414 chr19 6848067 6848067 1 + G A SKCM 6848068 + 6848048 6848088 41 CCTGGCCAACCGCTCGGACGGGACTTTCTTGGTGCGGCAGA CCTGGCCAACCGCTCGGACAGGACTTTCTTGGTGCGGCAGA < 41bp 0.580845505953563 0.78132224952794 NA NA prediction 0.400953487148754 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6848068 chr19:6848067 nonsynonymous SNV 0.890 3 20 hm7G_associated_SNPs_38462 0 0 0 0 2 VAV1 chr19:6848125 5'GT 6848125 Upstream 59bp 35415 chr11 93800820 93800820 1 - G A COAD 93800819 - 93800799 93800839 41 GTGGCTGGGAACAGGTTGACGACATCAGTCCGATGCCCTCT GTGGCTGGGAACAGGTTGATGACATCAGTCCGATGCCCTCT < 41bp 0.497955666670301 0.700475472338402 NA NA prediction 0.400950944676804 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93800819 chr11:93800820 nonsynonymous SNV 0.404 2 20 hm7G_associated_SNPs_38464 0 0 0 0 1 HEPHL1 chr11:93800909 3'AG 93800909 Downstream 90bp 35416 chrX 48649519 48649519 1 + G A SKCM 48649520 + 48649500 48649540 41 TAATCCCCAGAGGCTCCATGGAGTTCCCTGGCCTGGGGTCC TAATCCCCAGAGGCTCCATAGAGTTCCCTGGCCTGGGGTCC < 41bp 0.5793907819287 0.779864955220626 NA NA prediction 0.400948346583852 Functional Gain - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48649520 chrX:48649519 nonsynonymous SNV 0.987 2 20 hm7G_associated_SNPs_38466 0 0 1 0 1 GATA1 chrX:48649498 3'AG 48649498 Downstream 22bp 35417 chr17 27010040 27010040 1 + G A UCEC 27010041 + 27010021 27010061 41 GCCCGTGAGCCCCTTGTCCGGCAGGTGCTGAGGCAAACCTT GCCCGTGAGCCCCTTGTCCAGCAGGTGCTGAGGCAAACCTT < 41bp 0.562215250057973 0.762688954011305 NA NA prediction 0.400947407906663 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27010041 chr17:27010040 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_38467 0 0 1 0 2 SUPT6H chr17:27009960 3'AG 27009960 Downstream 81bp 35418 chr17 27010040 27010040 1 + G A UCEC 27010041 + 27010021 27010061 41 GCCCGTGAGCCCCTTGTCCGGCAGGTGCTGAGGCAAACCTT GCCCGTGAGCCCCTTGTCCAGCAGGTGCTGAGGCAAACCTT < 41bp 0.562215250057973 0.762688954011305 NA NA prediction 0.400947407906663 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27010041 chr17:27010040 nonsynonymous SNV 0.977 4 20 hm7G_associated_SNPs_38467 0 0 1 0 2 SUPT6H chr17:27010110 5'GT 27010110 Upstream 71bp 35419 chr3 156241698 156241698 1 + C T STAD 156241699 + 156241679 156241719 41 AAAGACCTTTCCCCAATTGCGGAGCGTCTGGGATGCACACT AAAGACCTTTCCCCAATTGTGGAGCGTCTGGGATGCACACT < 41bp 0.530417053568052 0.730890126390434 NA NA prediction 0.400946145644765 Functional Gain - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156241699 chr3:156241698 nonsynonymous SNV 0.692 4 20 hm7G_associated_SNPs_38468 0 0 0 0 2 KCNAB1 chr3:156241616 3'AG 156241616 Downstream 83bp 35420 chr3 156241698 156241698 1 + C T STAD 156241699 + 156241679 156241719 41 AAAGACCTTTCCCCAATTGCGGAGCGTCTGGGATGCACACT AAAGACCTTTCCCCAATTGTGGAGCGTCTGGGATGCACACT < 41bp 0.530417053568052 0.730890126390434 NA NA prediction 0.400946145644765 Functional Gain - KCNAB1 ENSG00000169282 CDS Human protein_coding chr3:156241699 chr3:156241698 nonsynonymous SNV 0.692 4 20 hm7G_associated_SNPs_38468 0 0 0 0 2 KCNAB1 chr3:156241736 5'GT 156241736 Upstream 39bp 35421 chr2 219754990 219754990 1 + G A UCEC 219754991 + 219754971 219755011 41 CAGCCCCGACATGGGCTTCGGGGAGCGCTTTTCTAAGGACT CAGCCCCGACATGGGCTTCAGGGAGCGCTTTTCTAAGGACT < 41bp 0.476819455445646 0.700472648842345 NA NA prediction 0.40094529768469 Functional Gain - WNT10A ENSG00000135925 CDS Human protein_coding chr2:219754991 chr2:219754990 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_38469 1 0 0 0 1 WNT10A chr2:219755085 5'GT 219755085 Upstream 96bp 35422 chr17 38172833 38172833 1 + G A BLCA 38172834 + 38172814 38172854 41 CCGAGTTGGGTCCCACCTTGGACACACTGCAGCTGGACGTC CCGAGTTGGGTCCCACCTTAGACACACTGCAGCTGGACGTC < 41bp 0.584131532805593 0.784602681446242 NA NA prediction 0.400942297281297 Functional Gain - CSF3 ENSG00000108342 CDS Human protein_coding chr17:38172834 chr17:38172833 synonymous SNV . 0 20 hm7G_associated_SNPs_38471 0 0 0 0 2 CSF3 chr17:38172738 3'AG 38172738 Downstream 96bp 35423 chr17 38172833 38172833 1 + G A BLCA 38172834 + 38172814 38172854 41 CCGAGTTGGGTCCCACCTTGGACACACTGCAGCTGGACGTC CCGAGTTGGGTCCCACCTTAGACACACTGCAGCTGGACGTC < 41bp 0.584131532805593 0.784602681446242 NA NA prediction 0.400942297281297 Functional Gain - CSF3 ENSG00000108342 CDS Human protein_coding chr17:38172834 chr17:38172833 synonymous SNV . 0 20 hm7G_associated_SNPs_38471 0 0 0 0 2 CSF3 chr17:38172884 5'GT 38172884 Upstream 52bp 35424 chr11 65403261 65403261 1 + C T rs11227245 65403262 + 65403242 65403282 41 CATTGCCCACTGGCTCCTGCGCACCTGGGAGAGGTGAGGCC CATTGCCCACTGGCTCCTGTGCACCTGGGAGAGGTGAGGCC < 41bp 0.518279885966464 0.718748321297054 NA NA prediction 0.40093687066118 Functional Gain - PCNX3 ENSG00000197136 CDS Human protein_coding chr11:65403262 chr11:65403261 nonsynonymous SNV 0.981 2 20 hm7G_associated_SNPs_38474 0 0 1 0 1 PCNX3 chr11:65403274 5'GT 65403274 Upstream 14bp 35425 chr2 66691269 66691269 1 + C T LUAD 66691270 + 66691250 66691290 41 AACAGAGATCATGATGACACGGCATCTACTCGTTCAGGAGG AACAGAGATCATGATGACATGGCATCTACTCGTTCAGGAGG < 41bp 0.519934500927789 0.720402004865378 NA NA prediction 0.400935007875178 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691270 chr2:66691269 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_38475 0 0 0 0 2 MEIS1 chr2:66691241 3'AG 66691241 Downstream 29bp 35426 chr2 66691269 66691269 1 + C T LUAD 66691270 + 66691250 66691290 41 AACAGAGATCATGATGACACGGCATCTACTCGTTCAGGAGG AACAGAGATCATGATGACATGGCATCTACTCGTTCAGGAGG < 41bp 0.519934500927789 0.720402004865378 NA NA prediction 0.400935007875178 Functional Gain - MEIS1 ENSG00000143995 CDS Human protein_coding chr2:66691270 chr2:66691269 nonsynonymous SNV 0.998 3 20 hm7G_associated_SNPs_38475 0 0 0 0 2 MEIS1 chr2:66691352 5'GT 66691352 Upstream 84bp 35427 chr20 3721471 3721471 1 + C T BRCA 3721472 + 3721452 3721492 41 TTCTCTGCAGGCTCCAGCCCGGAGCGGTCCCCAGTGCCTAG TTCTCTGCAGGCTCCAGCCTGGAGCGGTCCCCAGTGCCTAG < 41bp 0.538733091411054 0.739200200069761 NA NA prediction 0.400934217317414 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3721472 chr20:3721471 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_38476 0 0 0 0 2 HSPA12B chr20:3721462 3'AG 3721462 Downstream 10bp 35428 chr20 3721471 3721471 1 + C T BRCA 3721472 + 3721452 3721492 41 TTCTCTGCAGGCTCCAGCCCGGAGCGGTCCCCAGTGCCTAG TTCTCTGCAGGCTCCAGCCTGGAGCGGTCCCCAGTGCCTAG < 41bp 0.538733091411054 0.739200200069761 NA NA prediction 0.400934217317414 Functional Gain - HSPA12B ENSG00000132622 CDS Human protein_coding chr20:3721472 chr20:3721471 nonsynonymous SNV 0.987 1 20 hm7G_associated_SNPs_38476 0 0 0 0 2 HSPA12B chr20:3721559 5'GT 3721559 Upstream 89bp 35429 chr8 38260109 38260109 1 + G A rs140730377 38260110 + 38260090 38260130 41 GGCTGCCTGTAGGGCCCGAGGGATGAGATCACTGGGTCTCA GGCTGCCTGTAGGGCCCGAAGGATGAGATCACTGGGTCTCA < 41bp 0.54187126593713 0.742335764187149 NA NA prediction 0.400928996500037 Functional Gain - LETM2 ENSG00000165046 CDS Human protein_coding chr8:38260110 chr8:38260109 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_38479 0 0 0 0 1 LETM2 chr8:38260043 3'AG 38260043 Downstream 67bp 35430 chr19 36216664 36216664 1 + C T rs558770050 36216665 + 36216645 36216685 41 TGCCGCCATGCATACCACCCGGCCTGTCTGGGGCCCAGCTA TGCCGCCATGCATACCACCTGGCCTGTCTGGGGCCCAGCTA < 41bp 0.494782651226333 0.700463702601866 NA NA prediction 0.400927405203732 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216665 chr19:36216664 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_38481 0 0 1 0 2 KMT2B chr19:36216624 3'AG 36216624 Downstream 41bp 35431 chr19 36216664 36216664 1 + C T rs558770050 36216665 + 36216645 36216685 41 TGCCGCCATGCATACCACCCGGCCTGTCTGGGGCCCAGCTA TGCCGCCATGCATACCACCTGGCCTGTCTGGGGCCCAGCTA < 41bp 0.494782651226333 0.700463702601866 NA NA prediction 0.400927405203732 Functional Gain - KMT2B ENSG00000272333 CDS Human protein_coding chr19:36216665 chr19:36216664 nonsynonymous SNV 0.988 2 20 hm7G_associated_SNPs_38481 0 0 1 0 2 KMT2B chr19:36216719 5'GT 36216719 Upstream 56bp 35432 chr11 71847054 71847054 1 + C T COAD 71847055 + 71847035 71847075 41 CTGGCTTTGGTGACTGCTGCGGGGAGTGCCCAGCCCAGGAG CTGGCTTTGGTGACTGCTGTGGGGAGTGCCCAGCCCAGGAG < 41bp 0.552597275492789 0.753059483400105 NA NA prediction 0.400924415814631 Functional Gain - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71847055 chr11:71847054 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_38483 0 0 0 0 1 FOLR3 chr11:71846993 3'AG 71846993 Downstream 62bp 35433 chr17 21215491 21215491 1 + G T ACC 21215492 + 21215472 21215512 41 CGGTTCCCTTACGAGTCCTGGGGGACCCCGTTCCAGCAGCT CGGTTCCCTTACGAGTCCTTGGGGACCCCGTTCCAGCAGCT < 41bp 0.33752621181808 0.700462165431009 NA NA prediction 0.400924330862018 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21215492 chr17:21215491 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38484 0 0 1 0 1 MAP2K3 chr17:21215454 3'AG 21215454 Downstream 38bp 35434 chr3 47043264 47043264 1 + C T COAD 47043265 + 47043245 47043285 41 GCTGATCTCCGTGAGATGGCGCAGATTGGCCTACGGCTTGT GCTGATCTCCGTGAGATGGTGCAGATTGGCCTACGGCTTGT < 41bp 0.526600951257416 0.727062375130791 NA NA prediction 0.40092284774675 Functional Gain - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47043265 chr3:47043264 nonsynonymous SNV 0.974 2 20 hm7G_associated_SNPs_38485 0 0 0 0 2 NBEAL2 chr3:47043179 3'AG 47043179 Downstream 86bp 35435 chr3 47043264 47043264 1 + C T COAD 47043265 + 47043245 47043285 41 GCTGATCTCCGTGAGATGGCGCAGATTGGCCTACGGCTTGT GCTGATCTCCGTGAGATGGTGCAGATTGGCCTACGGCTTGT < 41bp 0.526600951257416 0.727062375130791 NA NA prediction 0.40092284774675 Functional Gain - NBEAL2 ENSG00000160796 CDS Human protein_coding chr3:47043265 chr3:47043264 nonsynonymous SNV 0.974 2 20 hm7G_associated_SNPs_38485 0 0 0 0 2 NBEAL2 chr3:47043316 5'GT 47043316 Upstream 53bp 35436 chr11 4112527 4112527 1 + C T HNSC 4112528 + 4112508 4112548 41 GCAGGGATTTGACCCATTCCGATTCGGAGTCCTCCCTCCAC GCAGGGATTTGACCCATTCTGATTCGGAGTCCTCCCTCCAC < 41bp 0.525501849687381 0.725962771151111 NA NA prediction 0.40092184292746 Functional Gain - STIM1 ENSG00000167323 CDS Human protein_coding chr11:4112528 chr11:4112527 stopgain 1.000 0 20 hm7G_associated_SNPs_38486 0 0 1 0 1 STIM1 chr11:4112512 3'AG 4112512 Downstream 16bp 35437 chr19 52909856 52909856 1 + C T BRCA 52909857 + 52909837 52909877 41 GTGAAGAGAAAATAGCAAACGATCCAGACGGCAGGGAGTGC GTGAAGAGAAAATAGCAAATGATCCAGACGGCAGGGAGTGC < 41bp 0.509690594200335 0.710151036890447 NA NA prediction 0.400920885380224 Functional Gain - ZNF528 ENSG00000167555 CDS Human protein_coding chr19:52909857 chr19:52909856 synonymous SNV . 0 20 hm7G_associated_SNPs_38487 0 0 0 0 2 ZNF528 chr19:52909768 3'AG 52909768 Downstream 89bp 35438 chr19 52909856 52909856 1 + C T BRCA 52909857 + 52909837 52909877 41 GTGAAGAGAAAATAGCAAACGATCCAGACGGCAGGGAGTGC GTGAAGAGAAAATAGCAAATGATCCAGACGGCAGGGAGTGC < 41bp 0.509690594200335 0.710151036890447 NA NA prediction 0.400920885380224 Functional Gain - ZNF528 ENSG00000167555 CDS Human protein_coding chr19:52909857 chr19:52909856 synonymous SNV . 0 20 hm7G_associated_SNPs_38487 0 0 0 0 2 ZNF528 chr19:52909896 5'GT 52909896 Upstream 41bp 35439 chr1 156877956 156877956 1 + G A STAD 156877957 + 156877937 156877977 41 CGGTGGGCCGCTTTGGGCAGGACTGTGCTGAGACGTGCGAC CGGTGGGCCGCTTTGGGCAAGACTGTGCTGAGACGTGCGAC < 41bp 0.568726724424819 0.769184891162129 NA NA prediction 0.400916333474619 Functional Gain - PEAR1 ENSG00000187800 CDS Human protein_coding chr1:156877957 chr1:156877956 synonymous SNV . 0 20 hm7G_associated_SNPs_38489 0 0 0 0 1 PEAR1 chr1:156877920 3'AG 156877920 Downstream 37bp 35440 chr10 94373192 94373192 1 + G T LUAD 94373193 + 94373173 94373213 41 GCTGTTGATAAGAGAGCTCGGGAAGCTGGAAATATAAATCA GCTGTTGATAAGAGAGCTCTGGAAGCTGGAAATATAAATCA < 41bp 0.709455786281588 0.909912484303449 NA NA prediction 0.400913396043722 Functional Gain - KIF11 ENSG00000138160 CDS Human protein_coding chr10:94373193 chr10:94373192 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38492 0 0 1 0 1 KIF11 chr10:94373134 3'AG 94373134 Downstream 59bp 35441 chrX 69456971 69456971 1 + C T CESC 69456972 + 69456952 69456992 41 ATGGCCTCCTGACCTTTGGCGCCTTCTGCAACTTCTGCACT ATGGCCTCCTGACCTTTGGTGCCTTCTGCAACTTCTGCACT < 41bp 0.551515833417477 0.751969536654879 NA NA prediction 0.400907406474805 Functional Gain - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69456972 chrX:69456971 synonymous SNV . 0 20 hm7G_associated_SNPs_38494 0 0 0 0 1 AWAT1 chrX:69456894 3'AG 69456894 Downstream 78bp 35442 chr5 76645261 76645261 1 + C T UCEC 76645262 + 76645242 76645282 41 AGTATGTCAACCCAGCCTTCGAAAGGATGATGGGCTACCAC AGTATGTCAACCCAGCCTTTGAAAGGATGATGGGCTACCAC < 41bp 0.549702788461664 0.750155751912713 NA NA prediction 0.400905926902097 Functional Gain - PDE8B ENSG00000113231 CDS Human protein_coding chr5:76645262 chr5:76645261 synonymous SNV . 0 20 hm7G_associated_SNPs_38496 0 0 1 0 1 PDE8B chr5:76645244 3'AG 76645244 Downstream 18bp 35443 chr1 247608058 247608058 1 + C T COAD 247608059 + 247608039 247608079 41 TGGGCAACAATGACCTGGGCGACCTGGGGGTCATGATGTTC TGGGCAACAATGACCTGGGTGACCTGGGGGTCATGATGTTC < 41bp 0.542572611746075 0.743025506384533 NA NA prediction 0.400905789276917 Functional Gain - NLRP3 ENSG00000162711 CDS Human protein_coding chr1:247608059 chr1:247608058 synonymous SNV . 0 20 hm7G_associated_SNPs_38497 0 0 0 0 1 NLRP3 chr1:247608123 5'GT 247608123 Upstream 66bp 35444 chr1 2235513 2235513 1 + G A rs114345135 2235514 + 2235494 2235534 41 AGGACAAGGACTCGGAGGCGGAGGTGGAAGTTGAAAGCAGG AGGACAAGGACTCGGAGGCAGAGGTGGAAGTTGAAAGCAGG < 41bp 0.494109536476446 0.700452503972859 NA NA prediction 0.400905007945718 Functional Gain - SKI ENSG00000157933 CDS Human protein_coding chr1:2235514 chr1:2235513 synonymous SNV . 0 20 hm7G_associated_SNPs_38498 3 0 1 0 1 SKI chr1:2235541 5'GT 2235541 Upstream 29bp 35445 chr22 32487604 32487604 1 + C T UCEC 32487605 + 32487585 32487625 41 TCCTTCTCTTCCAGGACTGCGAGGCCTGATGCTATCAGTCA TCCTTCTCTTCCAGGACTGTGAGGCCTGATGCTATCAGTCA < 41bp 0.490952355107073 0.700452426219701 NA NA prediction 0.400904852439401 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32487605 chr22:32487604 stopgain 1.000 1 20 hm7G_associated_SNPs_38499 0 0 0 0 1 SLC5A1 chr22:32487599 3'AG 32487599 Downstream 6bp 35446 chr2 102781689 102781689 1 + C T GBM 102781690 + 102781670 102781710 41 AACTACCCGTTGCAGGAGACGGAGGACTTGTGTGCCCTTAT AACTACCCGTTGCAGGAGATGGAGGACTTGTGTGCCCTTAT < 41bp 0.541590458528972 0.742042577581007 NA NA prediction 0.400904238104071 Functional Gain - IL1R1 ENSG00000115594 CDS Human protein_coding chr2:102781690 chr2:102781689 synonymous SNV . 0 20 hm7G_associated_SNPs_38500 0 0 0 0 1 IL1R1 chr2:102781764 5'GT 102781764 Upstream 76bp 35447 chr11 64694328 64694328 1 + G A HNSC 64694329 + 64694309 64694349 41 GAGCTGGTGGAGTGTGTGGGGAGCACCCGGGGTGTCCTCAT GAGCTGGTGGAGTGTGTGGAGAGCACCCGGGGTGTCCTCAT < 41bp 0.544474754164956 0.744925854316249 NA NA prediction 0.400902200302587 Functional Gain - PPP2R5B ENSG00000068971 CDS Human protein_coding chr11:64694329 chr11:64694328 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_38501 0 0 1 0 1 PPP2R5B chr11:64694380 5'GT 64694380 Upstream 53bp 35448 chr15 74180061 74180061 1 + G A SKCM 74180062 + 74180042 74180082 41 CTGCAGGAAAGCATGGGCGGGGATGACATCCTCCTGGTGAG CTGCAGGAAAGCATGGGCGAGGATGACATCCTCCTGGTGAG < 41bp 0.546908075447171 0.747358670644164 NA NA prediction 0.400901190393985 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74180062 chr15:74180061 nonsynonymous SNV 0.036 0 20 hm7G_associated_SNPs_38504 0 0 0 0 1 TBC1D21 chr15:74180077 5'GT 74180077 Upstream 17bp 35449 chr12 122186251 122186251 1 + C T CESC 122186252 + 122186232 122186272 41 GTGCAAACGCCATGCCAGTCGGGAGGAGGCGGAGCTCGTTC GTGCAAACGCCATGCCAGTTGGGAGGAGGCGGAGCTCGTTC < 41bp 0.49485843541892 0.700450211988806 NA NA prediction 0.400900423977611 Functional Gain - TMEM120B ENSG00000188735 CDS Human protein_coding chr12:122186252 chr12:122186251 nonsynonymous SNV 0.836 1 20 hm7G_associated_SNPs_38505 0 0 1 0 2 TMEM120B chr12:122186232 3'AG 122186232 Downstream 20bp 35450 chr12 122186251 122186251 1 + C T CESC 122186252 + 122186232 122186272 41 GTGCAAACGCCATGCCAGTCGGGAGGAGGCGGAGCTCGTTC GTGCAAACGCCATGCCAGTTGGGAGGAGGCGGAGCTCGTTC < 41bp 0.49485843541892 0.700450211988806 NA NA prediction 0.400900423977611 Functional Gain - TMEM120B ENSG00000188735 CDS Human protein_coding chr12:122186252 chr12:122186251 nonsynonymous SNV 0.836 1 20 hm7G_associated_SNPs_38505 0 0 1 0 2 TMEM120B chr12:122186348 5'GT 122186348 Upstream 98bp 35451 chr17 72938108 72938108 1 + C T UCEC 72938109 + 72938089 72938129 41 ACCTTGTCTTCTCTGTCATCGAGATGGTCTTCATCGGCGTC ACCTTGTCTTCTCTGTCATTGAGATGGTCTTCATCGGCGTC < 41bp 0.491510830743852 0.700448253846763 NA NA prediction 0.400896507693527 Functional Gain - OTOP3 ENSG00000182938 CDS Human protein_coding chr17:72938109 chr17:72938108 synonymous SNV . 0 20 hm7G_associated_SNPs_38508 0 0 0 0 1 OTOP3 chr17:72938132 5'GT 72938132 Upstream 25bp 35452 chr14 60587988 60587988 1 + G T KIRC 60587989 + 60587969 60588009 41 GATAATGATTCTGGAATGTGGCTATACTTACTGCTCTATTA GATAATGATTCTGGAATGTTGCTATACTTACTGCTCTATTA < 41bp 0.360349847693152 0.700442372179204 NA NA prediction 0.400884744358408 Functional Gain - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60587989 chr14:60587988 nonsynonymous SNV 0.827 4 20 hm7G_associated_SNPs_38511 0 0 1 0 2 PCNX4 chr14:60587914 3'AG 60587914 Downstream 75bp 35453 chr14 60587988 60587988 1 + G T KIRC 60587989 + 60587969 60588009 41 GATAATGATTCTGGAATGTGGCTATACTTACTGCTCTATTA GATAATGATTCTGGAATGTTGCTATACTTACTGCTCTATTA < 41bp 0.360349847693152 0.700442372179204 NA NA prediction 0.400884744358408 Functional Gain - PCNX4 ENSG00000126773 CDS Human protein_coding chr14:60587989 chr14:60587988 nonsynonymous SNV 0.827 4 20 hm7G_associated_SNPs_38511 0 0 1 0 2 PCNX4 chr14:60588017 5'GT 60588017 Upstream 30bp 35454 chr20 30671713 30671713 1 + C T UCEC 30671714 + 30671694 30671734 41 CAGGAAGCTACTCTTTGTCCGTGCGAGACTACGACCCTCGG CAGGAAGCTACTCTTTGTCTGTGCGAGACTACGACCCTCGG < 41bp 0.528297099857231 0.728738921968746 NA NA prediction 0.400883644223029 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30671714 chr20:30671713 synonymous SNV . 0 20 hm7G_associated_SNPs_38513 0 0 0 0 1 HCK chr20:30671697 3'AG 30671697 Downstream 17bp 35455 chr7 100320428 100320428 1 + C T BLCA 100320429 + 100320409 100320449 41 TAAAGCCGTCAGTGGCCTTCGCAGCCTCACCACTCTGCTTC TAAAGCCGTCAGTGGCCTTTGCAGCCTCACCACTCTGCTTC < 41bp 0.546303542467277 0.746744871680223 NA NA prediction 0.40088265842589 Functional Gain - EPO ENSG00000130427 CDS Human protein_coding chr7:100320429 chr7:100320428 nonsynonymous SNV 0.403 3 20 hm7G_associated_SNPs_38514 0 0 0 0 1 EPO chr7:100320466 5'GT 100320466 Upstream 39bp 35456 chrX 70389119 70389119 1 + G A LIHC 70389120 + 70389100 70389140 41 TCAGGGATCCCAACAAGCCGGTCCCCCAGGACACCAAGTTC TCAGGGATCCCAACAAGCCAGTCCCCCAGGACACCAAGTTC < 41bp 0.536384438673538 0.736824373920743 NA NA prediction 0.400879870494409 Functional Gain - NLGN3 ENSG00000196338 CDS Human protein_coding chrX:70389120 chrX:70389119 synonymous SNV . 0 20 hm7G_associated_SNPs_38515 0 0 0 0 1 NLGN3 chrX:70389104 3'AG 70389104 Downstream 16bp 35457 chr6 43222790 43222790 1 + C T SKCM 43222791 + 43222771 43222811 41 GGTCTCCCTTCTGCAGCCTCGGAATGTGGCCGGGTTTCGAG GGTCTCCCTTCTGCAGCCTTGGAATGTGGCCGGGTTTCGAG < 41bp 0.539294600216276 0.739734274185195 NA NA prediction 0.400879347937838 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222791 chr6:43222790 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_38516 0 0 0 0 2 TTBK1 chr6:43222787 3'AG 43222787 Downstream 4bp 35458 chr6 43222790 43222790 1 + C T SKCM 43222791 + 43222771 43222811 41 GGTCTCCCTTCTGCAGCCTCGGAATGTGGCCGGGTTTCGAG GGTCTCCCTTCTGCAGCCTTGGAATGTGGCCGGGTTTCGAG < 41bp 0.539294600216276 0.739734274185195 NA NA prediction 0.400879347937838 Functional Gain - TTBK1 ENSG00000146216 CDS Human protein_coding chr6:43222791 chr6:43222790 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_38516 0 0 0 0 2 TTBK1 chr6:43222852 5'GT 43222852 Upstream 63bp 35459 chr8 1645408 1645408 1 + C T STAD 1645409 + 1645389 1645429 41 ACGTCAGCATGAAGTTCGACGAGCTGCAGCGGCTGCGGCTC ACGTCAGCATGAAGTTCGATGAGCTGCAGCGGCTGCGGCTC < 41bp 0.516920512052046 0.717360163966672 NA NA prediction 0.400879303829251 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1645409 chr8:1645408 synonymous SNV . 0 20 hm7G_associated_SNPs_38517 0 0 0 0 2 DLGAP2 chr8:1645313 3'AG 1645313 Downstream 96bp 35460 chr8 1645408 1645408 1 + C T STAD 1645409 + 1645389 1645429 41 ACGTCAGCATGAAGTTCGACGAGCTGCAGCGGCTGCGGCTC ACGTCAGCATGAAGTTCGATGAGCTGCAGCGGCTGCGGCTC < 41bp 0.516920512052046 0.717360163966672 NA NA prediction 0.400879303829251 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1645409 chr8:1645408 synonymous SNV . 0 20 hm7G_associated_SNPs_38517 0 0 0 0 2 DLGAP2 chr8:1645465 5'GT 1645465 Upstream 58bp 35461 chr10 5248279 5248279 1 + C T SKCM 5248280 + 5248260 5248300 41 CAGGATTGGCCAAGTCCATCGGGGTGTCAAACTTCAACTGC CAGGATTGGCCAAGTCCATTGGGGTGTCAAACTTCAACTGC < 41bp 0.54856110871208 0.748998103311157 NA NA prediction 0.400873989198154 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248280 chr10:5248279 synonymous SNV . 0 20 hm7G_associated_SNPs_38518 0 0 0 0 2 AKR1C4 chr10:5248238 3'AG 5248238 Downstream 42bp 35462 chr10 5248279 5248279 1 + C T SKCM 5248280 + 5248260 5248300 41 CAGGATTGGCCAAGTCCATCGGGGTGTCAAACTTCAACTGC CAGGATTGGCCAAGTCCATTGGGGTGTCAAACTTCAACTGC < 41bp 0.54856110871208 0.748998103311157 NA NA prediction 0.400873989198154 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5248280 chr10:5248279 synonymous SNV . 0 20 hm7G_associated_SNPs_38518 0 0 0 0 2 AKR1C4 chr10:5248360 5'GT 5248360 Upstream 82bp 35463 chr3 10916703 10916703 1 + G A SKCM 10916704 + 10916684 10916724 41 GCTGATCCTCCTGATACGAGGGGTCACGTTGCCCGGGGCCT GCTGATCCTCCTGATACGAAGGGTCACGTTGCCCGGGGCCT < 41bp 0.482925456100628 0.700436929799119 NA NA prediction 0.400873859598237 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916704 chr3:10916703 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_38519 0 0 1 0 2 SLC6A11 chr3:10916646 3'AG 10916646 Downstream 58bp 35464 chr3 10916703 10916703 1 + G A SKCM 10916704 + 10916684 10916724 41 GCTGATCCTCCTGATACGAGGGGTCACGTTGCCCGGGGCCT GCTGATCCTCCTGATACGAAGGGTCACGTTGCCCGGGGCCT < 41bp 0.482925456100628 0.700436929799119 NA NA prediction 0.400873859598237 Functional Gain - SLC6A11 ENSG00000132164 CDS Human protein_coding chr3:10916704 chr3:10916703 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_38519 0 0 1 0 2 SLC6A11 chr3:10916780 5'GT 10916780 Upstream 78bp 35465 chr5 173059 173059 1 + C T READ 173060 + 173040 173080 41 GATGCCGGGATGAGTTTATCGTTTGCTGCGGGAGGAAGAAG GATGCCGGGATGAGTTTATTGTTTGCTGCGGGAGGAAGAAG < 41bp 0.546263021878064 0.74669933154699 NA NA prediction 0.400872619337852 Functional Gain - PLEKHG4B ENSG00000153404 CDS Human protein_coding chr5:173060 chr5:173059 synonymous SNV . 0 20 hm7G_associated_SNPs_38520 0 0 1 0 1 PLEKHG4B chr5:173012 3'AG 173012 Downstream 48bp 35466 chr9 37429744 37429744 1 + G A rs12002324 37429745 + 37429725 37429765 41 CTAGGCCAGGCCATTGCTCGGCGTCTGAAACCATTCGGTGT CTAGGCCAGGCCATTGCTCAGCGTCTGAAACCATTCGGTGT < 41bp 0.488431946055385 0.700436132711312 NA NA prediction 0.400872265422624 Functional Gain - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37429745 chr9:37429744 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_38521 0 0 1 0 2 GRHPR chr9:37429729 3'AG 37429729 Downstream 16bp 35467 chr9 37429744 37429744 1 + G A rs12002324 37429745 + 37429725 37429765 41 CTAGGCCAGGCCATTGCTCGGCGTCTGAAACCATTCGGTGT CTAGGCCAGGCCATTGCTCAGCGTCTGAAACCATTCGGTGT < 41bp 0.488431946055385 0.700436132711312 NA NA prediction 0.400872265422624 Functional Gain - GRHPR ENSG00000137106 CDS Human protein_coding chr9:37429745 chr9:37429744 nonsynonymous SNV 0.997 0 20 hm7G_associated_SNPs_38521 0 0 1 0 2 GRHPR chr9:37429833 5'GT 37429833 Upstream 90bp 35468 chr2 108618435 108618435 1 + C T STAD 108618436 + 108618416 108618456 41 CATGCCAAATACCAAAAGCCGTGGCTGGGAACTGTTGACTC CATGCCAAATACCAAAAGCTGTGGCTGGGAACTGTTGACTC < 41bp 0.513117086181358 0.71355267420219 NA NA prediction 0.400871176041663 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108618436 chr2:108618435 nonsynonymous SNV 0.519 2 20 hm7G_associated_SNPs_38522 0 0 0 0 3 SLC5A7 chr2:108618353 3'AG 108618353 Downstream 83bp 35469 chr2 108618435 108618435 1 + C T STAD 108618436 + 108618416 108618456 41 CATGCCAAATACCAAAAGCCGTGGCTGGGAACTGTTGACTC CATGCCAAATACCAAAAGCTGTGGCTGGGAACTGTTGACTC < 41bp 0.513117086181358 0.71355267420219 NA NA prediction 0.400871176041663 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108618436 chr2:108618435 nonsynonymous SNV 0.519 2 20 hm7G_associated_SNPs_38522 0 0 0 0 3 SLC5A7 chr2:108618390 3'AG 108618390 Downstream 46bp 35470 chr2 108618435 108618435 1 + C T STAD 108618436 + 108618416 108618456 41 CATGCCAAATACCAAAAGCCGTGGCTGGGAACTGTTGACTC CATGCCAAATACCAAAAGCTGTGGCTGGGAACTGTTGACTC < 41bp 0.513117086181358 0.71355267420219 NA NA prediction 0.400871176041663 Functional Gain - SLC5A7 ENSG00000115665 CDS Human protein_coding chr2:108618436 chr2:108618435 nonsynonymous SNV 0.519 2 20 hm7G_associated_SNPs_38522 0 0 0 0 3 SLC5A7 chr2:108618496 5'GT 108618496 Upstream 62bp 35471 chr12 250440 250440 1 + C T GBM 250441 + 250421 250461 41 GCAAGAAGCAGTTCAACCGCGACGTGCTGGAGTGAGTACCC GCAAGAAGCAGTTCAACCGTGACGTGCTGGAGTGAGTACCC < 41bp 0.496211543318306 0.700434372072896 NA NA prediction 0.400868744145793 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:250441 chr12:250440 synonymous SNV . 0 20 hm7G_associated_SNPs_38524 0 0 0 0 1 IQSEC3 chr12:250451 5'GT 250451 Upstream 12bp 35472 chr16 84779244 84779244 1 + C T UCEC 84779245 + 84779225 84779265 41 GTCAAAGAAGGGCTTGTTCCGGTTTCAGAGGATCCTGTAGC GTCAAAGAAGGGCTTGTTCTGGTTTCAGAGGATCCTGTAGC < 41bp 0.487370191837377 0.70043395531417 NA NA prediction 0.40086791062834 Functional Gain - USP10 ENSG00000103194 CDS Human protein_coding chr16:84779245 chr16:84779244 nonsynonymous SNV 0.995 3 20 hm7G_associated_SNPs_38525 0 0 1 0 1 USP10 chr16:84779279 5'GT 84779279 Upstream 36bp 35473 chr17 7748912 7748912 1 + C T STAD 7748913 + 7748893 7748933 41 TCCAGGGGCCCGCGCTGCACGGGAAGCCTTTGCCCTTGGGG TCCAGGGGCCCGCGCTGCATGGGAAGCCTTTGCCCTTGGGG < 41bp 0.515522417540972 0.715956181290238 NA NA prediction 0.400867527498532 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7748913 chr17:7748912 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38526 0 0 1 0 2 KDM6B chr17:7748868 3'AG 7748868 Downstream 45bp 35474 chr17 7748912 7748912 1 + C T STAD 7748913 + 7748893 7748933 41 TCCAGGGGCCCGCGCTGCACGGGAAGCCTTTGCCCTTGGGG TCCAGGGGCCCGCGCTGCATGGGAAGCCTTTGCCCTTGGGG < 41bp 0.515522417540972 0.715956181290238 NA NA prediction 0.400867527498532 Functional Gain - KDM6B ENSG00000132510 CDS Human protein_coding chr17:7748913 chr17:7748912 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38526 0 0 1 0 2 KDM6B chr17:7749009 5'GT 7749009 Upstream 98bp 35475 chr2 234851311 234851311 1 + G T LUAD 234851312 + 234851292 234851332 41 CCATCAGCAGGAGTTCAGAGGAGAATATTGTGGCCATTGGC CCATCAGCAGGAGTTCAGATGAGAATATTGTGGCCATTGGC < 41bp 0.353399011101165 0.700433666563175 NA NA prediction 0.400867333126351 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234851312 chr2:234851311 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_38527 0 0 0 0 2 TRPM8 chr2:234851220 3'AG 234851220 Downstream 92bp 35476 chr2 234851311 234851311 1 + G T LUAD 234851312 + 234851292 234851332 41 CCATCAGCAGGAGTTCAGAGGAGAATATTGTGGCCATTGGC CCATCAGCAGGAGTTCAGATGAGAATATTGTGGCCATTGGC < 41bp 0.353399011101165 0.700433666563175 NA NA prediction 0.400867333126351 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234851312 chr2:234851311 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_38527 0 0 0 0 2 TRPM8 chr2:234851392 5'GT 234851392 Upstream 82bp 35477 chr1 203134419 203134419 1 + G A COAD 203134420 + 203134400 203134440 41 TGGTGACCCCCCGGAGGGCGGCGGTGGCCATAGCCGGCTGC TGGTGACCCCCCGGAGGGCAGCGGTGGCCATAGCCGGCTGC < 41bp 0.588976854897262 0.789407819332579 NA NA prediction 0.400861928870634 Functional Gain - ADORA1 ENSG00000163485 CDS Human protein_coding chr1:203134420 chr1:203134419 synonymous SNV . 0 20 hm7G_associated_SNPs_38529 0 0 0 0 1 ADORA1 chr1:203134389 3'AG 203134389 Downstream 31bp 35478 chr21 38098479 38098479 1 + C T UCEC 38098480 + 38098460 38098500 41 TGCTGGACATGTCCCTGTACGACTCCTGCTACCAGATTGTG TGCTGGACATGTCCCTGTATGACTCCTGCTACCAGATTGTG < 41bp 0.485030380504661 0.700430520569324 NA NA prediction 0.400861041138648 Functional Gain - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38098480 chr21:38098479 synonymous SNV . 0 20 hm7G_associated_SNPs_38530 0 0 1 0 1 SIM2 chr21:38098420 3'AG 38098420 Downstream 60bp 35479 chr16 81922807 81922807 1 + C T GBM 81922808 + 81922788 81922828 41 TCAGGATCTGAACAAAGTCCGTGAGCGGATGACAAAGTTCA TCAGGATCTGAACAAAGTCTGTGAGCGGATGACAAAGTTCA < 41bp 0.495635168882514 0.700427819936875 NA NA prediction 0.40085563987375 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81922808 chr16:81922807 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_38533 0 0 0 0 2 PLCG2 chr16:81922777 3'AG 81922777 Downstream 31bp 35480 chr16 81922807 81922807 1 + C T GBM 81922808 + 81922788 81922828 41 TCAGGATCTGAACAAAGTCCGTGAGCGGATGACAAAGTTCA TCAGGATCTGAACAAAGTCTGTGAGCGGATGACAAAGTTCA < 41bp 0.495635168882514 0.700427819936875 NA NA prediction 0.40085563987375 Functional Gain - PLCG2 ENSG00000197943 CDS Human protein_coding chr16:81922808 chr16:81922807 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_38533 0 0 0 0 2 PLCG2 chr16:81922878 5'GT 81922878 Upstream 72bp 35481 chr16 89592737 89592737 1 + C T COAD 89592738 + 89592718 89592758 41 TCTCCTTTCTGCCCCCCAGCGGCTAGCCTTGATGTACCGAA TCTCCTTTCTGCCCCCCAGTGGCTAGCCTTGATGTACCGAA < 41bp 0.483050845145435 0.70042753499622 NA NA prediction 0.40085506999244 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89592738 chr16:89592737 nonsynonymous SNV 0.832 4 20 hm7G_associated_SNPs_38535 0 0 1 0 1 SPG7 chr16:89592737 3'AG 89592737 Downstream 1bp 35482 chr10 134014349 134014349 1 + G A SKCM 134014350 + 134014330 134014370 41 CCTGGCTTGTTTCCAGCGGGGACCTCCAGGTGACAGGCAGC CCTGGCTTGTTTCCAGCGGAGACCTCCAGGTGACAGGCAGC < 41bp 0.569732050497445 0.770159024524237 NA NA prediction 0.400853948053583 Functional Gain - DPYSL4 ENSG00000151640 CDS Human protein_coding chr10:134014350 chr10:134014349 synonymous SNV . 0 20 hm7G_associated_SNPs_38536 0 0 0 0 1 DPYSL4 chr10:134014346 3'AG 134014346 Downstream 4bp 35483 chr2 242102714 242102714 1 + C T LGG 242102715 + 242102695 242102735 41 CACAGGCAATCGAAAATATCGACACCTTAACCAACCTGGAG CACAGGCAATCGAAAATATTGACACCTTAACCAACCTGGAG < 41bp 0.547208153410824 0.747634220158329 NA NA prediction 0.400852133495011 Functional Gain - PPP1R7 ENSG00000115685 CDS Human protein_coding chr2:242102715 chr2:242102714 synonymous SNV . 0 20 hm7G_associated_SNPs_38537 0 0 1 0 1 PPP1R7 chr2:242102700 3'AG 242102700 Downstream 15bp 35484 chr7 150558114 150558114 1 + C T UCEC 150558115 + 150558095 150558135 41 CAGCCACACCTGGGAACTCCGTGGGCTTCCTGCTCCGGCCA CAGCCACACCTGGGAACTCTGTGGGCTTCCTGCTCCGGCCA < 41bp 0.510615880547585 0.711041107052932 NA NA prediction 0.400850453010694 Functional Gain - AOC1 ENSG00000002726 CDS Human protein_coding chr7:150558115 chr7:150558114 synonymous SNV . 0 20 hm7G_associated_SNPs_38538 0 0 0 0 1 AOC1 chr7:150558031 3'AG 150558031 Downstream 84bp 35485 chr9 139563056 139563056 1 + C T SKCM 139563057 + 139563037 139563077 41 GGGGACCCTGTCTCCGAGTCGTTCGTGCAGCGTGTGTACCA GGGGACCCTGTCTCCGAGTTGTTCGTGCAGCGTGTGTACCA < 41bp 0.522006648470379 0.722431560128424 NA NA prediction 0.400849823316091 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139563057 chr9:139563056 nonsynonymous SNV 0.318 2 20 hm7G_associated_SNPs_38541 0 0 1 2 2 EGFL7 chr9:139563009 3'AG 139563009 Downstream 48bp 35486 chr9 139563056 139563056 1 + C T SKCM 139563057 + 139563037 139563077 41 GGGGACCCTGTCTCCGAGTCGTTCGTGCAGCGTGTGTACCA GGGGACCCTGTCTCCGAGTTGTTCGTGCAGCGTGTGTACCA < 41bp 0.522006648470379 0.722431560128424 NA NA prediction 0.400849823316091 Functional Gain - EGFL7 ENSG00000172889 CDS Human protein_coding chr9:139563057 chr9:139563056 nonsynonymous SNV 0.318 2 20 hm7G_associated_SNPs_38541 0 0 1 2 2 EGFL7 chr9:139563125 5'GT 139563125 Upstream 70bp 35487 chr9 2086832 2086832 1 + C T READ 2086833 + 2086813 2086853 41 TCCTCTTGTGTTATAGATTCGGTGGAAATACATGATAGTGG TCCTCTTGTGTTATAGATTTGGTGGAAATACATGATAGTGG < 41bp 0.547312676514649 0.747736981715982 NA NA prediction 0.400848610402665 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2086833 chr9:2086832 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_38542 0 0 1 0 2 SMARCA2 chr9:2086829 3'AG 2086829 Downstream 4bp 35488 chr9 2086832 2086832 1 + C T READ 2086833 + 2086813 2086853 41 TCCTCTTGTGTTATAGATTCGGTGGAAATACATGATAGTGG TCCTCTTGTGTTATAGATTTGGTGGAAATACATGATAGTGG < 41bp 0.547312676514649 0.747736981715982 NA NA prediction 0.400848610402665 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2086833 chr9:2086832 nonsynonymous SNV 0.998 5 20 hm7G_associated_SNPs_38542 0 0 1 0 2 SMARCA2 chr9:2086897 5'GT 2086897 Upstream 66bp 35489 chr2 88482261 88482261 1 + C T SKCM 88482262 + 88482242 88482282 41 GCCTGCCCATCCGTCTGGTCGTGGCAGTGAACCGCAATGAC GCCTGCCCATCCGTCTGGTTGTGGCAGTGAACCGCAATGAC < 41bp 0.523410796735061 0.723834298191398 NA NA prediction 0.400847002912674 Functional Gain - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88482262 chr2:88482261 synonymous SNV . 0 20 hm7G_associated_SNPs_38543 0 0 0 0 1 THNSL2 chr2:88482218 3'AG 88482218 Downstream 44bp 35490 chr1 26012988 26012988 1 + C T COAD 26012989 + 26012969 26013009 41 AATGGGGAAAAACGAACTCCGTCCACTAACAAAAGATGGCT AATGGGGAAAAACGAACTCTGTCCACTAACAAAAGATGGCT < 41bp 0.521154222461318 0.721577040978957 NA NA prediction 0.400845637035279 Functional Gain - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26012989 chr1:26012988 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_38546 0 0 0 0 2 MAN1C1 chr1:26012931 3'AG 26012931 Downstream 58bp 35491 chr1 26012988 26012988 1 + C T COAD 26012989 + 26012969 26013009 41 AATGGGGAAAAACGAACTCCGTCCACTAACAAAAGATGGCT AATGGGGAAAAACGAACTCTGTCCACTAACAAAAGATGGCT < 41bp 0.521154222461318 0.721577040978957 NA NA prediction 0.400845637035279 Functional Gain - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26012989 chr1:26012988 nonsynonymous SNV 0.972 4 20 hm7G_associated_SNPs_38546 0 0 0 0 2 MAN1C1 chr1:26013027 5'GT 26013027 Upstream 40bp 35492 chr3 52812410 52812410 1 + C T READ 52812411 + 52812391 52812431 41 CAACTGCAAAGTCACCTCTCGCTTCGCCCACTATGTTGTCA CAACTGCAAAGTCACCTCTTGCTTCGCCCACTATGTTGTCA < 41bp 0.5638580168461 0.764279781973862 NA NA prediction 0.400843530255524 Functional Gain - ITIH1 ENSG00000055957 CDS Human protein_coding chr3:52812411 chr3:52812410 nonsynonymous SNV 0.999 4 20 hm7G_associated_SNPs_38548 0 0 0 0 1 ITIH1 chr3:52812356 3'AG 52812356 Downstream 55bp 35493 chr20 44641949 44641949 1 + G A STAD 44641950 + 44641930 44641970 41 CCACCACACCGCAGCCCACGGCTCCCCCGACGGTCTGCCCC CCACCACACCGCAGCCCACAGCTCCCCCGACGGTCTGCCCC < 41bp 0.618946903624518 0.819368463625764 NA NA prediction 0.400843120002493 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44641950 chr20:44641949 synonymous SNV . 0 20 hm7G_associated_SNPs_38549 0 0 0 0 1 MMP9 chr20:44641894 3'AG 44641894 Downstream 56bp 35494 chr16 77910291 77910291 1 + C T SKCM 77910292 + 77910272 77910312 41 CTGCTGAAGGTGTGGACATCGTTTTGGATTGCCTCTGTGGG CTGCTGAAGGTGTGGACATTGTTTTGGATTGCCTCTGTGGG < 41bp 0.49695791867827 0.700417580564895 NA NA prediction 0.40083516112979 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77910292 chr16:77910291 synonymous SNV . 0 20 hm7G_associated_SNPs_38551 0 0 0 0 2 VAT1L chr16:77910267 3'AG 77910267 Downstream 25bp 35495 chr16 77910291 77910291 1 + C T SKCM 77910292 + 77910272 77910312 41 CTGCTGAAGGTGTGGACATCGTTTTGGATTGCCTCTGTGGG CTGCTGAAGGTGTGGACATTGTTTTGGATTGCCTCTGTGGG < 41bp 0.49695791867827 0.700417580564895 NA NA prediction 0.40083516112979 Functional Gain - VAT1L ENSG00000171724 CDS Human protein_coding chr16:77910292 chr16:77910291 synonymous SNV . 0 20 hm7G_associated_SNPs_38551 0 0 0 0 2 VAT1L chr16:77910370 5'GT 77910370 Upstream 80bp 35496 chr7 47694925 47694925 1 + G T ESCA 47694926 + 47694906 47694946 41 AGGAAGACGGCTCTGGCCGGGCCCCAGGGAGGGAGGCAGCG AGGAAGACGGCTCTGGCCGTGCCCCAGGGAGGGAGGCAGCG < 41bp 0.701370966038372 0.901786336317568 NA NA prediction 0.400830740558392 Functional Gain - C7orf65 ENSG00000221845 CDS Human lincRNA chr7:47694926 chr7:47694925 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_38552 0 0 0 0 1 C7orf65 chr7:47694946 5'GT 47694946 Upstream 22bp 35497 chr1 109707179 109707179 1 + C T LUSC 109707180 + 109707160 109707200 41 ACCAGTCATGTAAGCCATGCGCTGAGGGCCGCTACTCCCTC ACCAGTCATGTAAGCCATGTGCTGAGGGCCGCTACTCCCTC < 41bp 0.552857245333621 0.753271859167361 NA NA prediction 0.400829227667479 Functional Gain - KIAA1324 ENSG00000116299 CDS Human protein_coding chr1:109707180 chr1:109707179 synonymous SNV . 0 20 hm7G_associated_SNPs_38554 0 0 0 0 1 KIAA1324 chr1:109707121 3'AG 109707121 Downstream 59bp 35498 chr11 93822128 93822128 1 + G A SKCM 93822129 + 93822109 93822149 41 CAGCACGTGGACGCAAGAGGGGAAAGGTACCACAGGCGCCG CAGCACGTGGACGCAAGAGAGGAAAGGTACCACAGGCGCCG < 41bp 0.534094794898164 0.734509237405657 NA NA prediction 0.400828885014986 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93822129 chr11:93822128 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_38555 0 0 0 0 1 HEPHL1 chr11:93822134 5'GT 93822134 Upstream 7bp 35499 chr10 45935892 45935892 1 + G A rs146362560 45935893 + 45935873 45935913 41 ATCAGCTCAACCAAATCCCGGGAGATGAGAACCCTATTTTC ATCAGCTCAACCAAATCCCAGGAGATGAGAACCCTATTTTC < 41bp 0.544450497159629 0.744863850011655 NA NA prediction 0.400826705704052 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45935893 chr10:45935892 synonymous SNV . 0 20 hm7G_associated_SNPs_38556 1 0 0 0 1 ALOX5 chr10:45935878 3'AG 45935878 Downstream 15bp 35500 chr16 31371109 31371109 1 + C T CESC 31371110 + 31371090 31371130 41 TTGCCACGATGATGAACTTCGTGAGAGCTGTGATAAGCCAG TTGCCACGATGATGAACTTTGTGAGAGCTGTGATAAGCCAG < 41bp 0.524148734322533 0.724561491985602 NA NA prediction 0.400825515326138 Functional Gain - ITGAX ENSG00000140678 CDS Human protein_coding chr16:31371110 chr16:31371109 synonymous SNV . 0 20 hm7G_associated_SNPs_38558 0 0 0 0 1 ITGAX chr16:31371151 5'GT 31371151 Upstream 43bp 35501 chr16 72110270 72110270 1 + G A SKCM 72110271 + 72110251 72110291 41 TGGACACCTGGATGCCAAAGGCAGCTTTCCCTGGCAGGCTA TGGACACCTGGATGCCAAAAGCAGCTTTCCCTGGCAGGCTA < 41bp 0.547452561559741 0.747864449632221 NA NA prediction 0.40082377614496 Functional Gain - HPR ENSG00000261701 CDS Human protein_coding chr16:72110271 chr16:72110270 nonsynonymous SNV 0.985 4 20 hm7G_associated_SNPs_38559 0 0 0 0 1 HPR chr16:72110202 3'AG 72110202 Downstream 69bp 35502 chr12 78542637 78542637 1 + C T BRCA 78542638 + 78542618 78542658 41 TCAGCAAATCCATAAACTGCGGAGAGAGCTGGTTGCATCAC TCAGCAAATCCATAAACTGTGGAGAGAGCTGGTTGCATCAC < 41bp 0.509218484429216 0.709629361292147 NA NA prediction 0.400821753725862 Functional Gain - NAV3 ENSG00000067798 CDS Human protein_coding chr12:78542638 chr12:78542637 nonsynonymous SNV 0.918 4 20 hm7G_associated_SNPs_38560 0 0 0 0 2 NAV3 chr12:78542622 3'AG 78542622 Downstream 16bp 35503 chr12 78542637 78542637 1 + C T BRCA 78542638 + 78542618 78542658 41 TCAGCAAATCCATAAACTGCGGAGAGAGCTGGTTGCATCAC TCAGCAAATCCATAAACTGTGGAGAGAGCTGGTTGCATCAC < 41bp 0.509218484429216 0.709629361292147 NA NA prediction 0.400821753725862 Functional Gain - NAV3 ENSG00000067798 CDS Human protein_coding chr12:78542638 chr12:78542637 nonsynonymous SNV 0.918 4 20 hm7G_associated_SNPs_38560 0 0 0 0 2 NAV3 chr12:78542699 5'GT 78542699 Upstream 63bp 35504 chr1 57158112 57158112 1 + C T SKCM 57158113 + 57158093 57158133 41 TAGGCATATGGTTGTTCATCGAGACCTGAAACCAGAGAATG TAGGCATATGGTTGTTCATTGAGACCTGAAACCAGAGAATG < 41bp 0.488686853064197 0.700409298453695 NA NA prediction 0.40081859690739 Functional Gain - PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57158113 chr1:57158112 stopgain 0.938 1 20 hm7G_associated_SNPs_38561 0 0 1 0 2 PRKAA2 chr1:57158031 3'AG 57158031 Downstream 82bp 35505 chr1 57158112 57158112 1 + C T SKCM 57158113 + 57158093 57158133 41 TAGGCATATGGTTGTTCATCGAGACCTGAAACCAGAGAATG TAGGCATATGGTTGTTCATTGAGACCTGAAACCAGAGAATG < 41bp 0.488686853064197 0.700409298453695 NA NA prediction 0.40081859690739 Functional Gain - PRKAA2 ENSG00000162409 CDS Human protein_coding chr1:57158113 chr1:57158112 stopgain 0.938 1 20 hm7G_associated_SNPs_38561 0 0 1 0 2 PRKAA2 chr1:57158175 5'GT 57158175 Upstream 64bp 35506 chr11 85979585 85979585 1 + C T STAD 85979586 + 85979566 85979606 41 ATTGTGTGCGATGGTTAGGCGATTTGATACTTTCTAAGGTA ATTGTGTGCGATGGTTAGGTGATTTGATACTTTCTAAGGTA < 41bp 0.531716859948692 0.732125127386205 NA NA prediction 0.400816534875027 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85979586 chr11:85979585 synonymous SNV . 0 20 hm7G_associated_SNPs_38562 0 0 1 0 2 EED chr11:85979498 3'AG 85979498 Downstream 88bp 35507 chr11 85979585 85979585 1 + C T STAD 85979586 + 85979566 85979606 41 ATTGTGTGCGATGGTTAGGCGATTTGATACTTTCTAAGGTA ATTGTGTGCGATGGTTAGGTGATTTGATACTTTCTAAGGTA < 41bp 0.531716859948692 0.732125127386205 NA NA prediction 0.400816534875027 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85979586 chr11:85979585 synonymous SNV . 0 20 hm7G_associated_SNPs_38562 0 0 1 0 2 EED chr11:85979603 5'GT 85979603 Upstream 19bp 35508 chr10 93748986 93748986 1 + C T CESC 93748987 + 93748967 93749007 41 ACAACAGTTAGATAGTAAACGACAGCAGGTCCAAATGACAG ACAACAGTTAGATAGTAAATGACAGCAGGTCCAAATGACAG < 41bp 0.522837406193409 0.723242789026034 NA NA prediction 0.40081076566525 Functional Gain - BTAF1 ENSG00000095564 CDS Human protein_coding chr10:93748987 chr10:93748986 stopgain 1.000 1 20 hm7G_associated_SNPs_38565 0 0 1 0 1 BTAF1 chr10:93748911 3'AG 93748911 Downstream 76bp 35509 chr1 110738261 110738261 1 + G T LUAD 110738262 + 110738242 110738282 41 GTTGTTCGTCCAGCGCTCCGGAAACTACTTTGTCACCATGT GTTGTTCGTCCAGCGCTCCTGAAACTACTTTGTCACCATGT < 41bp 0.358140624779342 0.700403566863967 NA NA prediction 0.400807133727934 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110738262 chr1:110738261 stopgain 0.996 1 20 hm7G_associated_SNPs_38568 0 0 0 0 1 SLC6A17 chr1:110738208 3'AG 110738208 Downstream 54bp 35510 chr2 217341882 217341882 1 + C T COAD 217341883 + 217341863 217341903 41 GCATTGGACAGACCAGCTCCGTGGGCATTCACTACCTCGTG GCATTGGACAGACCAGCTCTGTGGGCATTCACTACCTCGTG < 41bp 0.499098351013539 0.700403503745258 NA NA prediction 0.400807007490517 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217341883 chr2:217341882 synonymous SNV . 0 20 hm7G_associated_SNPs_38569 0 0 0 10 2 SMARCAL1 chr2:217341832 3'AG 217341832 Downstream 51bp 35511 chr2 217341882 217341882 1 + C T COAD 217341883 + 217341863 217341903 41 GCATTGGACAGACCAGCTCCGTGGGCATTCACTACCTCGTG GCATTGGACAGACCAGCTCTGTGGGCATTCACTACCTCGTG < 41bp 0.499098351013539 0.700403503745258 NA NA prediction 0.400807007490517 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217341883 chr2:217341882 synonymous SNV . 0 20 hm7G_associated_SNPs_38569 0 0 0 10 2 SMARCAL1 chr2:217341932 5'GT 217341932 Upstream 51bp 35512 chrX 117714128 117714128 1 + C T UCEC 117714129 + 117714109 117714149 41 GACAATACAGAATGCCCTTCGCTTGGGCTGCCAGGTTTGTA GACAATACAGAATGCCCTTTGCTTGGGCTGCCAGGTTTGTA < 41bp 0.532083539501739 0.732483238273781 NA NA prediction 0.400799397544085 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117714129 chrX:117714128 synonymous SNV . 0 20 hm7G_associated_SNPs_38570 0 0 1 0 2 DOCK11 chrX:117714060 3'AG 117714060 Downstream 69bp 35513 chrX 117714128 117714128 1 + C T UCEC 117714129 + 117714109 117714149 41 GACAATACAGAATGCCCTTCGCTTGGGCTGCCAGGTTTGTA GACAATACAGAATGCCCTTTGCTTGGGCTGCCAGGTTTGTA < 41bp 0.532083539501739 0.732483238273781 NA NA prediction 0.400799397544085 Functional Gain - DOCK11 ENSG00000147251 CDS Human protein_coding chrX:117714129 chrX:117714128 synonymous SNV . 0 20 hm7G_associated_SNPs_38570 0 0 1 0 2 DOCK11 chrX:117714142 5'GT 117714142 Upstream 15bp 35514 chr2 37586969 37586969 1 + C T UCEC 37586970 + 37586950 37586990 41 AATGATGTTGGAACTTGCTCGTGCCTTAGACAAGAAACTCC AATGATGTTGGAACTTGCTTGTGCCTTAGACAAGAAACTCC < 41bp 0.501491592094747 0.701890519171886 NA NA prediction 0.400797854154279 Functional Gain - QPCT ENSG00000115828 CDS Human protein_coding chr2:37586970 chr2:37586969 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38571 0 0 1 0 1 QPCT chr2:37587001 5'GT 37587001 Upstream 33bp 35515 chr15 91489873 91489873 1 + G A UCEC 91489874 + 91489854 91489894 41 GAGGGCCAAGGGCTGGCCGGGAAGCTACGGGCCATCCAGAC GAGGGCCAAGGGCTGGCCGAGAAGCTACGGGCCATCCAGAC < 41bp 0.554760558185201 0.755158689739216 NA NA prediction 0.40079626310803 Functional Gain - UNC45A ENSG00000140553 CDS Human protein_coding chr15:91489874 chr15:91489873 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_38573 0 0 1 0 1 UNC45A chr15:91489844 3'AG 91489844 Downstream 30bp 35516 chr7 73474738 73474738 1 + G A SKCM 73474739 + 73474719 73474759 41 GCTTGGTGCTGGCATCCCTGGACTTGGAGTTGGTGTCGGCG GCTTGGTGCTGGCATCCCTAGACTTGGAGTTGGTGTCGGCG < 41bp 0.491790428369332 0.700394757627573 NA NA prediction 0.400789515255145 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73474739 chr7:73474738 nonsynonymous SNV 0.149 3 20 hm7G_associated_SNPs_38575 0 0 0 0 2 ELN chr7:73474706 3'AG 73474706 Downstream 33bp 35517 chr7 73474738 73474738 1 + G A SKCM 73474739 + 73474719 73474759 41 GCTTGGTGCTGGCATCCCTGGACTTGGAGTTGGTGTCGGCG GCTTGGTGCTGGCATCCCTAGACTTGGAGTTGGTGTCGGCG < 41bp 0.491790428369332 0.700394757627573 NA NA prediction 0.400789515255145 Functional Gain - ELN ENSG00000049540 CDS Human protein_coding chr7:73474739 chr7:73474738 nonsynonymous SNV 0.149 3 20 hm7G_associated_SNPs_38575 0 0 0 0 2 ELN chr7:73474831 5'GT 73474831 Upstream 94bp 35518 chr22 32014111 32014111 1 + C T rs368620857 32014112 + 32014092 32014132 41 ACCCCTCAGGTCCTGTCGGCGGCAAGCGAGCAGCCTGCGCA ACCCCTCAGGTCCTGTCGGTGGCAAGCGAGCAGCCTGCGCA < 41bp 0.542502964033973 0.742897699429181 NA NA prediction 0.400789470790415 Functional Gain - SFI1 ENSG00000198089 CDS Human protein_coding chr22:32014112 chr22:32014111 nonsynonymous SNV 0.927 4 20 hm7G_associated_SNPs_38576 0 0 1 0 1 SFI1 chr22:32014101 3'AG 32014101 Downstream 11bp 35519 chr11 292020 292020 1 + C T UCEC 292021 + 292001 292041 41 TGATGTTCCACCCAGAAGCCGCCAGGGCCATCCTGGAGTAC TGATGTTCCACCCAGAAGCTGCCAGGGCCATCCTGGAGTAC < 41bp 0.543241371764342 0.743635966515248 NA NA prediction 0.400789189501811 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292021 chr11:292020 synonymous SNV . 0 20 hm7G_associated_SNPs_38578 0 0 1 0 2 PGGHG chr11:291976 3'AG 291976 Downstream 45bp 35520 chr11 292020 292020 1 + C T UCEC 292021 + 292001 292041 41 TGATGTTCCACCCAGAAGCCGCCAGGGCCATCCTGGAGTAC TGATGTTCCACCCAGAAGCTGCCAGGGCCATCCTGGAGTAC < 41bp 0.543241371764342 0.743635966515248 NA NA prediction 0.400789189501811 Functional Gain - PGGHG ENSG00000142102 CDS Human protein_coding chr11:292021 chr11:292020 synonymous SNV . 0 20 hm7G_associated_SNPs_38578 0 0 1 0 2 PGGHG chr11:292095 5'GT 292095 Upstream 76bp 35521 chr2 242155536 242155536 1 + C T UCEC 242155537 + 242155517 242155557 41 GGGCTGGTGGCAGAAGTTCCGGCTTCGCTCCAAGAAGAGGA GGGCTGGTGGCAGAAGTTCTGGCTTCGCTCCAAGAAGAGGA < 41bp 0.551328019904763 0.75172216843786 NA NA prediction 0.400788297066194 Functional Gain - ANO7 ENSG00000146205 CDS Human protein_coding chr2:242155537 chr2:242155536 nonsynonymous SNV 0.020 3 20 hm7G_associated_SNPs_38579 0 0 0 0 1 ANO7 chr2:242155508 3'AG 242155508 Downstream 29bp 35522 chr6 76344431 76344431 1 + C T rs17414086 76344432 + 76344412 76344452 41 TGAATCTGCAGTGAAAATACGCAAAATACGTCATTATGTTC TGAATCTGCAGTGAAAATATGCAAAATACGTCATTATGTTC < 41bp 0.502727084145755 0.703119314726573 NA NA prediction 0.400784461161638 Functional Gain - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76344432 chr6:76344431 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_38580 0 0 1 0 2 SENP6 chr6:76344423 3'AG 76344423 Downstream 9bp 35523 chr6 76344431 76344431 1 + C T rs17414086 76344432 + 76344412 76344452 41 TGAATCTGCAGTGAAAATACGCAAAATACGTCATTATGTTC TGAATCTGCAGTGAAAATATGCAAAATACGTCATTATGTTC < 41bp 0.502727084145755 0.703119314726573 NA NA prediction 0.400784461161638 Functional Gain - SENP6 ENSG00000112701 CDS Human protein_coding chr6:76344432 chr6:76344431 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_38580 0 0 1 0 2 SENP6 chr6:76344527 5'GT 76344527 Upstream 97bp 35524 chr11 64359170 64359170 1 + C T SKCM 64359171 + 64359151 64359191 41 GGCCGCCGTGCCCAGCCACCGCTGCTGGGCACCCCTCCTGG GGCCGCCGTGCCCAGCCACTGCTGCTGGGCACCCCTCCTGG < 41bp 0.50341873476871 0.703809859896587 NA NA prediction 0.400782250255754 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64359171 chr11:64359170 nonsynonymous SNV 0.988 3 20 hm7G_associated_SNPs_38581 0 0 0 0 1 SLC22A12 chr11:64359131 3'AG 64359131 Downstream 40bp 35525 chr2 102998082 102998082 1 + C T COAD 102998083 + 102998063 102998103 41 TCTTTTGTCACTTCTAGATCGCAGTAATATAGTTCCGGTTC TCTTTTGTCACTTCTAGATTGCAGTAATATAGTTCCGGTTC < 41bp 0.499840819606088 0.700390535363194 NA NA prediction 0.400781070726389 Functional Gain - IL18R1 ENSG00000115604 CDS Human protein_coding chr2:102998083 chr2:102998082 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_38582 0 0 0 0 2 IL18R1 chr2:102998080 3'AG 102998080 Downstream 3bp 35526 chr2 102998082 102998082 1 + C T COAD 102998083 + 102998063 102998103 41 TCTTTTGTCACTTCTAGATCGCAGTAATATAGTTCCGGTTC TCTTTTGTCACTTCTAGATTGCAGTAATATAGTTCCGGTTC < 41bp 0.499840819606088 0.700390535363194 NA NA prediction 0.400781070726389 Functional Gain - IL18R1 ENSG00000115604 CDS Human protein_coding chr2:102998083 chr2:102998082 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_38582 0 0 0 0 2 IL18R1 chr2:102998142 5'GT 102998142 Upstream 61bp 35527 chr16 68713830 68713830 1 + C T STAD 68713831 + 68713811 68713851 41 CCTCATGTTCACCATTCACCGGAGCACAGGCACCATCAGCG CCTCATGTTCACCATTCACTGGAGCACAGGCACCATCAGCG < 41bp 0.567229723534776 0.767619322739424 NA NA prediction 0.400779198409296 Functional Gain - CDH3 ENSG00000062038 CDS Human protein_coding chr16:68713831 chr16:68713830 nonsynonymous SNV 0.300 3 20 hm7G_associated_SNPs_38583 0 0 0 0 1 CDH3 chr16:68713877 5'GT 68713877 Upstream 48bp 35528 chr12 19653081 19653081 1 + C T LUSC 19653082 + 19653062 19653102 41 ACTGGATGCGATAAGACATCGAGCCATATGCTTTAACCTCT ACTGGATGCGATAAGACATTGAGCCATATGCTTTAACCTCT < 41bp 0.491380122109944 0.700386239347634 NA NA prediction 0.400772478695267 Functional Gain - AEBP2 ENSG00000139154 CDS Human protein_coding chr12:19653082 chr12:19653081 stopgain 1.000 0 20 hm7G_associated_SNPs_38586 0 0 1 0 2 AEBP2 chr12:19653031 3'AG 19653031 Downstream 51bp 35529 chr12 19653081 19653081 1 + C T LUSC 19653082 + 19653062 19653102 41 ACTGGATGCGATAAGACATCGAGCCATATGCTTTAACCTCT ACTGGATGCGATAAGACATTGAGCCATATGCTTTAACCTCT < 41bp 0.491380122109944 0.700386239347634 NA NA prediction 0.400772478695267 Functional Gain - AEBP2 ENSG00000139154 CDS Human protein_coding chr12:19653082 chr12:19653081 stopgain 1.000 0 20 hm7G_associated_SNPs_38586 0 0 1 0 2 AEBP2 chr12:19653155 5'GT 19653155 Upstream 75bp 35530 chr11 93911563 93911563 1 + C T UCEC 93911564 + 93911544 93911584 41 TACATCCTGCTGCTCTTTGCGATCCTCCTGTACCTGCCCCC TACATCCTGCTGCTCTTTGTGATCCTCCTGTACCTGCCCCC < 41bp 0.561137872275712 0.761523465315843 NA NA prediction 0.400771186080262 Functional Gain - PANX1 ENSG00000110218 CDS Human protein_coding chr11:93911564 chr11:93911563 nonsynonymous SNV 0.100 4 20 hm7G_associated_SNPs_38587 0 0 1 0 1 PANX1 chr11:93911535 3'AG 93911535 Downstream 29bp 35531 chr14 100138656 100138656 1 + G A COAD 100138657 + 100138637 100138677 41 CTGTGTGTCGTTGGCAGGCGGGCACCACCTGGCAAATGTCA CTGTGTGTCGTTGGCAGGCAGGCACCACCTGGCAAATGTCA < 41bp 0.589208652775062 0.789593412134857 NA NA prediction 0.40076951871959 Functional Gain - HHIPL1 ENSG00000182218 CDS Human protein_coding chr14:100138657 chr14:100138656 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_38588 0 0 0 0 2 HHIPL1 chr14:100138654 3'AG 100138654 Downstream 3bp 35532 chr14 100138656 100138656 1 + G A COAD 100138657 + 100138637 100138677 41 CTGTGTGTCGTTGGCAGGCGGGCACCACCTGGCAAATGTCA CTGTGTGTCGTTGGCAGGCAGGCACCACCTGGCAAATGTCA < 41bp 0.589208652775062 0.789593412134857 NA NA prediction 0.40076951871959 Functional Gain - HHIPL1 ENSG00000182218 CDS Human protein_coding chr14:100138657 chr14:100138656 nonsynonymous SNV 0.973 1 20 hm7G_associated_SNPs_38588 0 0 0 0 2 HHIPL1 chr14:100138736 5'GT 100138736 Upstream 81bp 35533 chr5 5209209 5209209 1 + C T COAD 5209210 + 5209190 5209230 41 CTCCTCTTTGTTTCAGCACCGCTCAAGCTATCTGCCTTGCT CTCCTCTTTGTTTCAGCACTGCTCAAGCTATCTGCCTTGCT < 41bp 0.544800111606802 0.745184440482987 NA NA prediction 0.40076865775237 Functional Gain - ADAMTS16 ENSG00000145536 CDS Human protein_coding chr5:5209210 chr5:5209209 synonymous SNV . 0 20 hm7G_associated_SNPs_38589 0 0 0 0 1 ADAMTS16 chr5:5209206 3'AG 5209206 Downstream 4bp 35534 chr10 102795274 102795274 1 + G A SKCM 102795275 + 102795255 102795295 41 GCCGGCGTGGTGACCCCAGGGATCACCGAGGACCAGCTGTG GCCGGCGTGGTGACCCCAGAGATCACCGAGGACCAGCTGTG < 41bp 0.476650746141356 0.700383396765197 NA NA prediction 0.400766793530395 Functional Gain - SFXN3 ENSG00000107819 CDS Human protein_coding chr10:102795275 chr10:102795274 nonsynonymous SNV 0.582 3 20 hm7G_associated_SNPs_38590 0 0 1 0 1 SFXN3 chr10:102795254 3'AG 102795254 Downstream 21bp 35535 chr9 5769250 5769250 1 + C T PRAD 5769251 + 5769231 5769271 41 TTTCAAAAATGGAAAATACCGAACTGGTAATGTAGACTTCA TTTCAAAAATGGAAAATACTGAACTGGTAATGTAGACTTCA < 41bp 0.522413659014542 0.72279505829207 NA NA prediction 0.400762798555056 Functional Gain - RIC1 ENSG00000107036 CDS Human protein_coding chr9:5769251 chr9:5769250 stopgain 0.990 1 20 hm7G_associated_SNPs_38591 0 0 0 0 1 RIC1 chr9:5769256 5'GT 5769256 Upstream 7bp 35536 chr4 6588793 6588793 1 + C T BLCA 6588794 + 6588774 6588814 41 GGCACGTTGACCCGTTTGGCGCCTCTGCCACGACGCCCACC GGCACGTTGACCCGTTTGGTGCCTCTGCCACGACGCCCACC < 41bp 0.547084378670991 0.747465111999427 NA NA prediction 0.400761466656874 Functional Gain - MAN2B2 ENSG00000013288 CDS Human protein_coding chr4:6588794 chr4:6588793 synonymous SNV . 0 20 hm7G_associated_SNPs_38593 0 0 0 0 1 MAN2B2 chr4:6588723 3'AG 6588723 Downstream 71bp 35537 chr9 71831353 71831353 1 + G A STAD 71831354 + 71831334 71831374 41 TCATTTCTGATGTGCTCCCGGGTGGGCCTGCTGATGGGCTG TCATTTCTGATGTGCTCCCAGGTGGGCCTGCTGATGGGCTG < 41bp 0.494804207001204 0.700379985906097 NA NA prediction 0.400759971812194 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71831354 chr9:71831353 synonymous SNV . 0 20 hm7G_associated_SNPs_38595 0 0 1 0 2 TJP2 chr9:71831255 3'AG 71831255 Downstream 99bp 35538 chr9 71831353 71831353 1 + G A STAD 71831354 + 71831334 71831374 41 TCATTTCTGATGTGCTCCCGGGTGGGCCTGCTGATGGGCTG TCATTTCTGATGTGCTCCCAGGTGGGCCTGCTGATGGGCTG < 41bp 0.494804207001204 0.700379985906097 NA NA prediction 0.400759971812194 Functional Gain - TJP2 ENSG00000119139 CDS Human protein_coding chr9:71831354 chr9:71831353 synonymous SNV . 0 20 hm7G_associated_SNPs_38595 0 0 1 0 2 TJP2 chr9:71831379 5'GT 71831379 Upstream 27bp 35539 chrX 37948763 37948763 1 + C T UCEC 37948764 + 37948744 37948784 41 TAGGACCCCGAAGAGCAGTCGGAGCAATGGTGTGACCCCAG TAGGACCCCGAAGAGCAGTTGGAGCAATGGTGTGACCCCAG < 41bp 0.53525818103058 0.735635223882061 NA NA prediction 0.400754085702961 Functional Gain - SYTL5 ENSG00000147041 CDS Human protein_coding chrX:37948764 chrX:37948763 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_38597 0 0 1 0 1 SYTL5 chrX:37948699 3'AG 37948699 Downstream 65bp 35540 chr9 133542071 133542071 1 + C T BLCA 133542072 + 133542052 133542092 41 CCATCCCTGGCGAGGGCCTCGGCATCTTCTCCAAGACGTGG CCATCCCTGGCGAGGGCCTTGGCATCTTCTCCAAGACGTGG < 41bp 0.555533857085734 0.755910321658894 NA NA prediction 0.40075292914632 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133542072 chr9:133542071 synonymous SNV . 0 20 hm7G_associated_SNPs_38599 0 0 0 0 1 PRDM12 chr9:133541995 3'AG 133541995 Downstream 77bp 35541 chr3 53752722 53752722 1 + C T UCEC 53752723 + 53752703 53752743 41 CATTAGGTGCTGGTGGAGACGGAGAGGCGCGGCCAAGGCGG CATTAGGTGCTGGTGGAGATGGAGAGGCGCGGCCAAGGCGG < 41bp 0.526591377332923 0.726967772681713 NA NA prediction 0.400752790697581 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53752723 chr3:53752722 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_38600 0 0 0 0 2 CACNA1D chr3:53752709 3'AG 53752709 Downstream 14bp 35542 chr3 53752722 53752722 1 + C T UCEC 53752723 + 53752703 53752743 41 CATTAGGTGCTGGTGGAGACGGAGAGGCGCGGCCAAGGCGG CATTAGGTGCTGGTGGAGATGGAGAGGCGCGGCCAAGGCGG < 41bp 0.526591377332923 0.726967772681713 NA NA prediction 0.400752790697581 Functional Gain - CACNA1D ENSG00000157388 CDS Human protein_coding chr3:53752723 chr3:53752722 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_38600 0 0 0 0 2 CACNA1D chr3:53752768 5'GT 53752768 Upstream 47bp 35543 chr2 219227557 219227557 1 + C T UCEC 219227558 + 219227538 219227578 41 CAGGGTGATGGCCTGGCGGCGGATGGTGCCCAGCAATGCCC CAGGGTGATGGCCTGGCGGTGGATGGTGCCCAGCAATGCCC < 41bp 0.551816132947771 0.752191205085761 NA NA prediction 0.40075014427598 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219227558 chr2:219227557 nonsynonymous SNV 0.486 2 20 hm7G_associated_SNPs_38601 0 0 0 0 2 CATIP chr2:219227458 3'AG 219227458 Downstream 100bp 35544 chr2 219227557 219227557 1 + C T UCEC 219227558 + 219227538 219227578 41 CAGGGTGATGGCCTGGCGGCGGATGGTGCCCAGCAATGCCC CAGGGTGATGGCCTGGCGGTGGATGGTGCCCAGCAATGCCC < 41bp 0.551816132947771 0.752191205085761 NA NA prediction 0.40075014427598 Functional Gain - CATIP ENSG00000158428 CDS Human protein_coding chr2:219227558 chr2:219227557 nonsynonymous SNV 0.486 2 20 hm7G_associated_SNPs_38601 0 0 0 0 2 CATIP chr2:219227625 5'GT 219227625 Upstream 69bp 35545 chr19 41235273 41235273 1 + G T LUSC 41235274 + 41235254 41235294 41 ACCAGATGGAAGACCTCCTGGCTGACTTTGAGGGCCCCTCC ACCAGATGGAAGACCTCCTTGCTGACTTTGAGGGCCCCTCC < 41bp 0.72222663093867 0.922601410093925 NA NA prediction 0.40074955831051 Functional Gain - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41235274 chr19:41235273 synonymous SNV . 0 20 hm7G_associated_SNPs_38602 0 0 0 0 1 ITPKC chr19:41235320 5'GT 41235320 Upstream 48bp 35546 chrX 70316525 70316525 1 + G T UCEC 70316526 + 70316506 70316546 41 AGCCGTCCGAGCCGCCCGAGGTGGAGCCAGATCTGGGGGAA AGCCGTCCGAGCCGCCCGATGTGGAGCCAGATCTGGGGGAA < 41bp 0.358069556126835 0.700367952326477 NA NA prediction 0.400735904652954 Functional Gain - FOXO4 ENSG00000184481 CDS Human protein_coding chrX:70316526 chrX:70316525 nonsynonymous SNV 0.955 1 20 hm7G_associated_SNPs_38606 0 0 0 0 1 FOXO4 chrX:70316549 5'GT 70316549 Upstream 25bp 35547 chr9 127089654 127089654 1 + C T STAD 127089655 + 127089635 127089675 41 TGTTCATCACAGCCACGGGCGTCGTGAAGCTCGGTGACCTT TGTTCATCACAGCCACGGGTGTCGTGAAGCTCGGTGACCTT < 41bp 0.534820297183312 0.735187673437656 NA NA prediction 0.40073475250869 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127089655 chr9:127089654 synonymous SNV . 0 20 hm7G_associated_SNPs_38607 0 0 1 0 2 NEK6 chr9:127089617 3'AG 127089617 Downstream 38bp 35548 chr9 127089654 127089654 1 + C T STAD 127089655 + 127089635 127089675 41 TGTTCATCACAGCCACGGGCGTCGTGAAGCTCGGTGACCTT TGTTCATCACAGCCACGGGTGTCGTGAAGCTCGGTGACCTT < 41bp 0.534820297183312 0.735187673437656 NA NA prediction 0.40073475250869 Functional Gain - NEK6 ENSG00000119408 CDS Human protein_coding chr9:127089655 chr9:127089654 synonymous SNV . 0 20 hm7G_associated_SNPs_38607 0 0 1 0 2 NEK6 chr9:127089724 5'GT 127089724 Upstream 71bp 35549 chr1 111890344 111890344 1 + G T UCEC 111890345 + 111890325 111890365 41 GATCCCAACCAGTATAAAAGGATATACTTTGGGAGCCAGAA GATCCCAACCAGTATAAAATGATATACTTTGGGAGCCAGAA < 41bp 0.706463562670995 0.906830059688744 NA NA prediction 0.4007329940355 Functional Gain - PIFO ENSG00000173947 CDS Human protein_coding chr1:111890345 chr1:111890344 stopgain 0.868 1 20 hm7G_associated_SNPs_38609 0 0 0 0 2 PIFO chr1:111890296 3'AG 111890296 Downstream 49bp 35550 chr1 111890344 111890344 1 + G T UCEC 111890345 + 111890325 111890365 41 GATCCCAACCAGTATAAAAGGATATACTTTGGGAGCCAGAA GATCCCAACCAGTATAAAATGATATACTTTGGGAGCCAGAA < 41bp 0.706463562670995 0.906830059688744 NA NA prediction 0.4007329940355 Functional Gain - PIFO ENSG00000173947 CDS Human protein_coding chr1:111890345 chr1:111890344 stopgain 0.868 1 20 hm7G_associated_SNPs_38609 0 0 0 0 2 PIFO chr1:111890394 5'GT 111890394 Upstream 51bp 35551 chr10 125447465 125447465 1 + C T GBM 125447466 + 125447446 125447486 41 CTAGTGGAGCTCTTCTCCACGGTGCCCATCGGCTCCCACTG CTAGTGGAGCTCTTCTCCATGGTGCCCATCGGCTCCCACTG < 41bp 0.517857712478942 0.718222551552133 NA NA prediction 0.400729678146382 Functional Gain - GPR26 ENSG00000154478 CDS Human protein_coding chr10:125447466 chr10:125447465 nonsynonymous SNV 0.069 1 20 hm7G_associated_SNPs_38611 0 0 0 0 1 GPR26 chr10:125447445 3'AG 125447445 Downstream 21bp 35552 chr8 11418865 11418865 1 + C T UCEC 11418866 + 11418846 11418886 41 TTCCATCCACCGCGACCTGCGGGCGGCCAACATCCTGGTGT TTCCATCCACCGCGACCTGTGGGCGGCCAACATCCTGGTGT < 41bp 0.544586665371289 0.744950483340114 NA NA prediction 0.400727635937651 Functional Gain - BLK ENSG00000136573 CDS Human protein_coding chr8:11418866 chr8:11418865 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_38612 0 0 0 0 1 BLK chr8:11418811 3'AG 11418811 Downstream 55bp 35553 chr19 45322125 45322125 1 + C T SARC 45322126 + 45322106 45322146 41 AGCCGCACCCAGAACTTCACGCTGCTGGTCCAAGGTTCAGG AGCCGCACCCAGAACTTCATGCTGCTGGTCCAAGGTTCAGG < 41bp 0.526678779344935 0.727039235131632 NA NA prediction 0.400720911573395 Functional Gain - BCAM ENSG00000187244 CDS Human protein_coding chr19:45322126 chr19:45322125 nonsynonymous SNV 0.279 0 20 hm7G_associated_SNPs_38618 0 0 1 0 1 BCAM chr19:45322139 5'GT 45322139 Upstream 15bp 35554 chr4 56846392 56846392 1 + G T LUAD 56846393 + 56846373 56846413 41 AAAGATTTGAAAAATATATGGAAGATATACAGTCCAATGTT AAAGATTTGAAAAATATATTGAAGATATACAGTCCAATGTT < 41bp 0.380964226353755 0.70036017928792 NA NA prediction 0.40072035857584 Functional Gain - CEP135 ENSG00000174799 CDS Human protein_coding chr4:56846393 chr4:56846392 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_38620 0 0 1 0 1 CEP135 chr4:56846461 5'GT 56846461 Upstream 70bp 35555 chr22 35785936 35785936 1 + G A SARC 35785937 + 35785917 35785957 41 GCACCAGGGCTTCGCCAGCGGGCCAGCAACAAAGTGCAAGG GCACCAGGGCTTCGCCAGCAGGCCAGCAACAAAGTGCAAGG < 41bp 0.57442435349376 0.774783690406018 NA NA prediction 0.400718673824518 Functional Gain - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35785937 chr22:35785936 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_38621 0 0 1 0 2 HMOX1 chr22:35785857 3'AG 35785857 Downstream 80bp 35556 chr22 35785936 35785936 1 + G A SARC 35785937 + 35785917 35785957 41 GCACCAGGGCTTCGCCAGCGGGCCAGCAACAAAGTGCAAGG GCACCAGGGCTTCGCCAGCAGGCCAGCAACAAAGTGCAAGG < 41bp 0.57442435349376 0.774783690406018 NA NA prediction 0.400718673824518 Functional Gain - HMOX1 ENSG00000100292 CDS Human protein_coding chr22:35785937 chr22:35785936 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_38621 0 0 1 0 2 HMOX1 chr22:35785956 5'GT 35785956 Upstream 21bp 35557 chr11 64977889 64977889 1 + C T UCEC 64977890 + 64977870 64977910 41 CGGTCGACTTTGACAATTTCGTTTGCTGCCTGGTGCGGCTA CGGTCGACTTTGACAATTTTGTTTGCTGCCTGGTGCGGCTA < 41bp 0.53161075355082 0.731969595185444 NA NA prediction 0.400717683269249 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64977890 chr11:64977889 synonymous SNV . 0 20 hm7G_associated_SNPs_38622 0 0 1 0 2 CAPN1 chr11:64977807 3'AG 64977807 Downstream 83bp 35558 chr11 64977889 64977889 1 + C T UCEC 64977890 + 64977870 64977910 41 CGGTCGACTTTGACAATTTCGTTTGCTGCCTGGTGCGGCTA CGGTCGACTTTGACAATTTTGTTTGCTGCCTGGTGCGGCTA < 41bp 0.53161075355082 0.731969595185444 NA NA prediction 0.400717683269249 Functional Gain - CAPN1 ENSG00000014216 CDS Human protein_coding chr11:64977890 chr11:64977889 synonymous SNV . 0 20 hm7G_associated_SNPs_38622 0 0 1 0 2 CAPN1 chr11:64977923 5'GT 64977923 Upstream 35bp 35559 chr2 33745690 33745690 1 + C T UCEC 33745691 + 33745671 33745711 41 TCGTATGACTGAGGAATTTCGGGAAGTAGCTAGTCAACTAG TCGTATGACTGAGGAATTTTGGGAAGTAGCTAGTCAACTAG < 41bp 0.549453715758596 0.749811661660749 NA NA prediction 0.400715891804306 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33745691 chr2:33745690 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_38623 0 0 0 0 2 RASGRP3 chr2:33745620 3'AG 33745620 Downstream 71bp 35560 chr2 33745690 33745690 1 + C T UCEC 33745691 + 33745671 33745711 41 TCGTATGACTGAGGAATTTCGGGAAGTAGCTAGTCAACTAG TCGTATGACTGAGGAATTTTGGGAAGTAGCTAGTCAACTAG < 41bp 0.549453715758596 0.749811661660749 NA NA prediction 0.400715891804306 Functional Gain - RASGRP3 ENSG00000152689 CDS Human protein_coding chr2:33745691 chr2:33745690 nonsynonymous SNV 0.995 1 20 hm7G_associated_SNPs_38623 0 0 0 0 2 RASGRP3 chr2:33745751 5'GT 33745751 Upstream 62bp 35561 chr1 29602258 29602258 1 + G A UCEC 29602259 + 29602239 29602279 41 AGGAGGTCACTTTCCAGACGGATGAGGATGGTAAGAGTCTC AGGAGGTCACTTTCCAGACAGATGAGGATGGTAAGAGTCTC < 41bp 0.502598818277302 0.70295606563316 NA NA prediction 0.400714494711716 Functional Gain - PTPRU ENSG00000060656 CDS Human protein_coding chr1:29602259 chr1:29602258 synonymous SNV . 0 20 hm7G_associated_SNPs_38624 0 0 1 0 1 PTPRU chr1:29602268 5'GT 29602268 Upstream 11bp 35562 chr17 43322776 43322776 1 + C T CHOL 43322777 + 43322757 43322797 41 CTGCTGGCAGACAGCAAGACGGCTCAGGTGCGCCAGGGCTG CTGCTGGCAGACAGCAAGATGGCTCAGGTGCGCCAGGGCTG < 41bp 0.53485883231115 0.73521557991653 NA NA prediction 0.400713495210761 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43322777 chr17:43322776 nonsynonymous SNV 0.979 2 20 hm7G_associated_SNPs_38625 0 0 0 0 1 FMNL1 chr17:43322783 5'GT 43322783 Upstream 8bp 35563 chr19 33585093 33585093 1 + C T GBM 33585094 + 33585074 33585114 41 CTAGATTATCTGTTGGTTTCGAATTGCTAAGAAAAATGGGT CTAGATTATCTGTTGGTTTTGAATTGCTAAGAAAAATGGGT < 41bp 0.560787420380573 0.761143248418639 NA NA prediction 0.400711656076133 Functional Gain - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33585094 chr19:33585093 synonymous SNV . 0 20 hm7G_associated_SNPs_38626 0 0 0 0 2 GPATCH1 chr19:33585078 3'AG 33585078 Downstream 16bp 35564 chr19 33585093 33585093 1 + C T GBM 33585094 + 33585074 33585114 41 CTAGATTATCTGTTGGTTTCGAATTGCTAAGAAAAATGGGT CTAGATTATCTGTTGGTTTTGAATTGCTAAGAAAAATGGGT < 41bp 0.560787420380573 0.761143248418639 NA NA prediction 0.400711656076133 Functional Gain - GPATCH1 ENSG00000076650 CDS Human protein_coding chr19:33585094 chr19:33585093 synonymous SNV . 0 20 hm7G_associated_SNPs_38626 0 0 0 0 2 GPATCH1 chr19:33585175 5'GT 33585175 Upstream 83bp 35565 chr16 2025698 2025698 1 + G A ESCA 2025699 + 2025679 2025719 41 TACGAGGCTCGCTCCCTGCGGCTGCAGAAACAGGTGCACAC TACGAGGCTCGCTCCCTGCAGCTGCAGAAACAGGTGCACAC < 41bp 0.563887737272427 0.764241783381992 NA NA prediction 0.40070809221913 Functional Gain - TBL3 ENSG00000183751 CDS Human protein_coding chr16:2025699 chr16:2025698 nonsynonymous SNV 0.055 0 20 hm7G_associated_SNPs_38629 0 0 0 0 1 TBL3 chr16:2025711 5'GT 2025711 Upstream 14bp 35566 chr13 25272901 25272901 1 + G A COAD 25272902 + 25272882 25272922 41 CAGCACCATCATGATCAACGGCGAGGAGCACCCACTGGACA CAGCACCATCATGATCAACAGCGAGGAGCACCCACTGGACA < 41bp 0.55783657042645 0.758188561725009 NA NA prediction 0.400703982597117 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25272902 chr13:25272901 nonsynonymous SNV 0.049 5 20 hm7G_associated_SNPs_38632 0 0 0 0 1 ATP12A chr13:25272988 5'GT 25272988 Upstream 88bp 35567 chr6 52343862 52343862 1 + C T UCEC 52343863 + 52343843 52343883 41 CATCCCAGAAGACAAAGACCGCAGATTTGTCTTCTCTTACT CATCCCAGAAGACAAAGACTGCAGATTTGTCTTCTCTTACT < 41bp 0.491765667878024 0.700349542180981 NA NA prediction 0.400699084361962 Functional Gain - EFHC1 ENSG00000096093 CDS Human protein_coding chr6:52343863 chr6:52343862 nonsynonymous SNV 0.989 5 20 hm7G_associated_SNPs_38635 3 0 1 0 1 EFHC1 chr6:52343835 3'AG 52343835 Downstream 28bp 35568 chr1 43777461 43777461 1 + C T COAD 43777462 + 43777442 43777482 41 CACTGTCCGCCTGCACTACCGGCCCCAGGACAGTACCATGG CACTGTCCGCCTGCACTACTGGCCCCAGGACAGTACCATGG < 41bp 0.549404334239459 0.749751602562014 NA NA prediction 0.400694536645111 Functional Gain - TIE1 ENSG00000066056 CDS Human protein_coding chr1:43777462 chr1:43777461 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38638 0 0 0 0 1 TIE1 chr1:43777500 5'GT 43777500 Upstream 40bp 35569 chr1 110737326 110737326 1 + C T STAD 110737327 + 110737307 110737347 41 TGGGCCTGGGCAGCATGATCGGGACCATGGCAGGCATCACC TGGGCCTGGGCAGCATGATTGGGACCATGGCAGGCATCACC < 41bp 0.55598617352434 0.756326442280064 NA NA prediction 0.400680537511447 Functional Gain - SLC6A17 ENSG00000197106 CDS Human protein_coding chr1:110737327 chr1:110737326 synonymous SNV . 0 20 hm7G_associated_SNPs_38639 0 0 0 0 1 SLC6A17 chr1:110737393 5'GT 110737393 Upstream 68bp 35570 chr11 64366040 64366040 1 + G A SKCM 64366041 + 64366021 64366061 41 CACAGGCAGGCTGGATTGGGGCCTGCAGGAGCTGTGGAGGG CACAGGCAGGCTGGATTGGAGCCTGCAGGAGCTGTGGAGGG < 41bp 0.578324052411536 0.778660525038996 NA NA prediction 0.400672945254918 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64366041 chr11:64366040 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_38641 0 0 0 0 2 SLC22A12 chr11:64365988 3'AG 64365988 Downstream 53bp 35571 chr11 64366040 64366040 1 + G A SKCM 64366041 + 64366021 64366061 41 CACAGGCAGGCTGGATTGGGGCCTGCAGGAGCTGTGGAGGG CACAGGCAGGCTGGATTGGAGCCTGCAGGAGCTGTGGAGGG < 41bp 0.578324052411536 0.778660525038996 NA NA prediction 0.400672945254918 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64366041 chr11:64366040 nonsynonymous SNV 0.017 0 20 hm7G_associated_SNPs_38641 0 0 0 0 2 SLC22A12 chr11:64366111 5'GT 64366111 Upstream 72bp 35572 chr8 104433228 104433228 1 + G T LUAD 104433229 + 104433209 104433249 41 ATTTGGAATCTAACTCAGCGGAATTGTATCCGTACAATACA ATTTGGAATCTAACTCAGCTGAATTGTATCCGTACAATACA < 41bp 0.362595624787978 0.70033567117297 NA NA prediction 0.40067134234594 Functional Gain - DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104433229 chr8:104433228 nonsynonymous SNV 0.910 3 20 hm7G_associated_SNPs_38642 0 0 1 0 2 DCAF13 chr8:104433203 3'AG 104433203 Downstream 26bp 35573 chr8 104433228 104433228 1 + G T LUAD 104433229 + 104433209 104433249 41 ATTTGGAATCTAACTCAGCGGAATTGTATCCGTACAATACA ATTTGGAATCTAACTCAGCTGAATTGTATCCGTACAATACA < 41bp 0.362595624787978 0.70033567117297 NA NA prediction 0.40067134234594 Functional Gain - DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104433229 chr8:104433228 nonsynonymous SNV 0.910 3 20 hm7G_associated_SNPs_38642 0 0 1 0 2 DCAF13 chr8:104433310 5'GT 104433310 Upstream 83bp 35574 chr16 68325477 68325477 1 + C T BLCA 68325478 + 68325458 68325498 41 CAGACATTTGCTGACCAGACGTTTGGCATGTTCAGCTGGAC CAGACATTTGCTGACCAGATGTTTGGCATGTTCAGCTGGAC < 41bp 0.535578410722115 0.735911500246368 NA NA prediction 0.400666179048505 Functional Gain - SLC7A6 ENSG00000103064 CDS Human protein_coding chr16:68325478 chr16:68325477 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_38645 0 0 1 0 1 SLC7A6 chr16:68325461 3'AG 68325461 Downstream 17bp 35575 chr5 55192244 55192244 1 + G A UCEC 55192245 + 55192225 55192265 41 GATGGAAGAAGGCCAGTGCGGTTGTTATGGAAGGTGACCTC GATGGAAGAAGGCCAGTGCAGTTGTTATGGAAGGTGACCTC < 41bp 0.50373931311702 0.704071781170492 NA NA prediction 0.400664936106944 Functional Gain - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55192245 chr5:55192244 nonsynonymous SNV 0.038 0 20 hm7G_associated_SNPs_38646 0 0 0 0 2 IL31RA chr5:55192178 3'AG 55192178 Downstream 67bp 35576 chr5 55192244 55192244 1 + G A UCEC 55192245 + 55192225 55192265 41 GATGGAAGAAGGCCAGTGCGGTTGTTATGGAAGGTGACCTC GATGGAAGAAGGCCAGTGCAGTTGTTATGGAAGGTGACCTC < 41bp 0.50373931311702 0.704071781170492 NA NA prediction 0.400664936106944 Functional Gain - IL31RA ENSG00000164509 CDS Human protein_coding chr5:55192245 chr5:55192244 nonsynonymous SNV 0.038 0 20 hm7G_associated_SNPs_38646 0 0 0 0 2 IL31RA chr5:55192257 5'GT 55192257 Upstream 14bp 35577 chr17 4352591 4352591 1 + G A SKCM 4352592 + 4352572 4352612 41 CTTTGTGACTGGAGCCCTGGGGTTCTGGGCCCCCAAGTTTC CTTTGTGACTGGAGCCCTGAGGTTCTGGGCCCCCAAGTTTC < 41bp 0.607705177984153 0.808037254706005 NA NA prediction 0.400664153443704 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352592 chr17:4352591 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_38647 0 0 0 0 2 SPNS3 chr17:4352530 3'AG 4352530 Downstream 62bp 35578 chr17 4352591 4352591 1 + G A SKCM 4352592 + 4352572 4352612 41 CTTTGTGACTGGAGCCCTGGGGTTCTGGGCCCCCAAGTTTC CTTTGTGACTGGAGCCCTGAGGTTCTGGGCCCCCAAGTTTC < 41bp 0.607705177984153 0.808037254706005 NA NA prediction 0.400664153443704 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4352592 chr17:4352591 nonsynonymous SNV 0.982 3 20 hm7G_associated_SNPs_38647 0 0 0 0 2 SPNS3 chr17:4352682 5'GT 4352682 Upstream 92bp 35579 chr5 178987134 178987134 1 + C T UCEC 178987135 + 178987115 178987155 41 CTGGGCCGCAGCCTGGATGCGGACCATGCCCCCTTGCAGCA CTGGGCCGCAGCCTGGATGTGGACCATGCCCCCTTGCAGCA < 41bp 0.553290361508528 0.753618864195899 NA NA prediction 0.400657005374741 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:178987135 chr5:178987134 nonsynonymous SNV 0.958 2 20 hm7G_associated_SNPs_38650 0 0 0 0 1 RUFY1 chr5:178987199 5'GT 178987199 Upstream 66bp 35580 chr11 93460188 93460188 1 + G T UCEC 93460189 + 93460169 93460209 41 AGCCAGAATATTCTTCACAGGAGGAGAGCCAGCATGCTGAT AGCCAGAATATTCTTCACATGAGGAGAGCCAGCATGCTGAT < 41bp 0.377182991779076 0.700325182917625 NA NA prediction 0.40065036583525 Functional Gain - CEP295 ENSG00000166004 CDS Human protein_coding chr11:93460189 chr11:93460188 nonsynonymous SNV 0.948 3 20 hm7G_associated_SNPs_38651 0 0 1 0 1 CEP295 chr11:93460142 3'AG 93460142 Downstream 47bp 35581 chr8 144802413 144802413 1 + C T ESCA 144802414 + 144802394 144802434 41 CCCCAGACCTCCTGGCTCTCGGCTCAGGCTGCCGTGCCTCT CCCCAGACCTCCTGGCTCTTGGCTCAGGCTGCCGTGCCTCT < 41bp 0.525845967983291 0.726169285557534 NA NA prediction 0.400646635148486 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144802414 chr8:144802413 synonymous SNV . 0 20 hm7G_associated_SNPs_38652 0 0 0 0 2 MAPK15 chr8:144802400 3'AG 144802400 Downstream 14bp 35582 chr8 144802413 144802413 1 + C T ESCA 144802414 + 144802394 144802434 41 CCCCAGACCTCCTGGCTCTCGGCTCAGGCTGCCGTGCCTCT CCCCAGACCTCCTGGCTCTTGGCTCAGGCTGCCGTGCCTCT < 41bp 0.525845967983291 0.726169285557534 NA NA prediction 0.400646635148486 Functional Gain - MAPK15 ENSG00000181085 CDS Human protein_coding chr8:144802414 chr8:144802413 synonymous SNV . 0 20 hm7G_associated_SNPs_38652 0 0 0 0 2 MAPK15 chr8:144802457 5'GT 144802457 Upstream 45bp 35583 chr3 38182296 38182296 1 + G T UCEC 38182297 + 38182277 38182317 41 ATGATTACCTGCAGAGCAAGGAATGTGACTTCCAGACCAAA ATGATTACCTGCAGAGCAATGAATGTGACTTCCAGACCAAA < 41bp 0.714976282440065 0.915299282600484 NA NA prediction 0.400646000320839 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182297 chr3:38182296 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_38653 0 0 0 0 2 MYD88 chr3:38182248 3'AG 38182248 Downstream 49bp 35584 chr3 38182296 38182296 1 + G T UCEC 38182297 + 38182277 38182317 41 ATGATTACCTGCAGAGCAAGGAATGTGACTTCCAGACCAAA ATGATTACCTGCAGAGCAATGAATGTGACTTCCAGACCAAA < 41bp 0.714976282440065 0.915299282600484 NA NA prediction 0.400646000320839 Functional Gain - MYD88 ENSG00000172936 CDS Human protein_coding chr3:38182297 chr3:38182296 nonsynonymous SNV 1.000 0 20 hm7G_associated_SNPs_38653 0 0 0 0 2 MYD88 chr3:38182339 5'GT 38182339 Upstream 44bp 35585 chr6 41310670 41310670 1 + G A COAD 41310671 + 41310651 41310691 41 TCAAGGGTTTTAAGGAATCGGCACATGCAGCATCAAGGGAG TCAAGGGTTTTAAGGAATCAGCACATGCAGCATCAAGGGAG < 41bp 0.494699486056613 0.70032179191351 NA NA prediction 0.40064358382702 Functional Gain - NCR2 ENSG00000096264 CDS Human protein_coding chr6:41310671 chr6:41310670 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_38655 0 0 0 0 1 NCR2 chr6:41310762 5'GT 41310762 Upstream 93bp 35586 chr11 67811079 67811079 1 + G A SKCM 67811080 + 67811060 67811100 41 CCTTCCTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAG CCTTCCTCATCTCCTACTGAGGTGAGCAGATCGGACAGAAG < 41bp 0.587605701442168 0.787925236264722 NA NA prediction 0.400639069645107 Functional Gain - TCIRG1 ENSG00000110719 CDS Human protein_coding chr11:67811080 chr11:67811079 stopgain 0.981 1 20 hm7G_associated_SNPs_38657 0 0 1 0 1 TCIRG1 chr11:67811038 3'AG 67811038 Downstream 42bp 35587 chr8 22865579 22865579 1 + G A LUAD 22865580 + 22865560 22865600 41 TTTCCAGCTGTGACTGGATGGCTGCCATGTTTGGGGGGCCA TTTCCAGCTGTGACTGGATAGCTGCCATGTTTGGGGGGCCA < 41bp 0.569004829126412 0.769322259159553 NA NA prediction 0.400634860066281 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865580 chr8:22865579 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38659 0 0 0 0 2 RHOBTB2 chr8:22865506 3'AG 22865506 Downstream 74bp 35588 chr8 22865579 22865579 1 + G A LUAD 22865580 + 22865560 22865600 41 TTTCCAGCTGTGACTGGATGGCTGCCATGTTTGGGGGGCCA TTTCCAGCTGTGACTGGATAGCTGCCATGTTTGGGGGGCCA < 41bp 0.569004829126412 0.769322259159553 NA NA prediction 0.400634860066281 Functional Gain - RHOBTB2 ENSG00000008853 CDS Human protein_coding chr8:22865580 chr8:22865579 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38659 0 0 0 0 2 RHOBTB2 chr8:22865624 5'GT 22865624 Upstream 46bp 35589 chr17 7948224 7948224 1 + C T MESO 7948225 + 7948205 7948245 41 TCTCAACCCTGTCCTGATCCGCCGCTGTCACTACCTCCCAA TCTCAACCCTGTCCTGATCTGCCGCTGTCACTACCTCCCAA < 41bp 0.557938076087392 0.758255361713551 NA NA prediction 0.400634571252318 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7948225 chr17:7948224 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_38660 0 0 0 0 2 ALOX15B chr17:7948147 3'AG 7948147 Downstream 78bp 35590 chr17 7948224 7948224 1 + C T MESO 7948225 + 7948205 7948245 41 TCTCAACCCTGTCCTGATCCGCCGCTGTCACTACCTCCCAA TCTCAACCCTGTCCTGATCTGCCGCTGTCACTACCTCCCAA < 41bp 0.557938076087392 0.758255361713551 NA NA prediction 0.400634571252318 Functional Gain - ALOX15B ENSG00000179593 CDS Human protein_coding chr17:7948225 chr17:7948224 nonsynonymous SNV 0.015 1 20 hm7G_associated_SNPs_38660 0 0 0 0 2 ALOX15B chr17:7948319 5'GT 7948319 Upstream 96bp 35591 chr1 110171328 110171328 1 + G A STAD 110171329 + 110171309 110171349 41 GCTGCGGCTCTCCATTTACGGGCGCTCGAGGGATGAGTGGG GCTGCGGCTCTCCATTTACAGGCGCTCGAGGGATGAGTGGG < 41bp 0.561689680297293 0.762006870451587 NA NA prediction 0.400634380308587 Functional Gain - AMPD2 ENSG00000116337 CDS Human protein_coding chr1:110171329 chr1:110171328 nonsynonymous SNV 1.000 5 20 hm7G_associated_SNPs_38661 0 0 1 1 1 AMPD2 chr1:110171265 3'AG 110171265 Downstream 64bp 35592 chr20 23346375 23346375 1 + C T STAD 23346376 + 23346356 23346396 41 CAGCCGTCCGCGCTCAAGACGCACATGAGGTACGCGGGGAG CAGCCGTCCGCGCTCAAGATGCACATGAGGTACGCGGGGAG < 41bp 0.536269407425801 0.736586168157306 NA NA prediction 0.400633521463011 Functional Gain - GZF1 ENSG00000125812 CDS Human protein_coding chr20:23346376 chr20:23346375 nonsynonymous SNV 0.886 3 20 hm7G_associated_SNPs_38662 0 0 0 0 1 GZF1 chr20:23346384 5'GT 23346384 Upstream 10bp 35593 chr5 68419114 68419114 1 + C T COAD 68419115 + 68419095 68419135 41 AGCAGTTTGGATGGTTCATCGCTGACCCACTCTGTTCTCTT AGCAGTTTGGATGGTTCATTGCTGACCCACTCTGTTCTCTT < 41bp 0.496404278699136 0.700316415817754 NA NA prediction 0.400632831635508 Functional Gain - SLC30A5 ENSG00000145740 CDS Human protein_coding chr5:68419115 chr5:68419114 synonymous SNV . 0 20 hm7G_associated_SNPs_38664 0 0 1 2 1 SLC30A5 chr5:68419026 3'AG 68419026 Downstream 89bp 35594 chr12 4835772 4835772 1 + C T COAD 4835773 + 4835753 4835793 41 GAGGGCGAAAGATGAAGTACGCCCTCTTCTAAAGGCAATGG GAGGGCGAAAGATGAAGTATGCCCTCTTCTAAAGGCAATGG < 41bp 0.499000774943146 0.700316104218372 NA NA prediction 0.400632208436744 Functional Gain - GALNT8 ENSG00000130035 CDS Human other chr12:4835773 chr12:4835772 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_38665 0 0 0 0 1 GALNT8 chr12:4835698 3'AG 4835698 Downstream 75bp 35595 chrX 128696373 128696373 1 + C T CESC 128696374 + 128696354 128696394 41 CTCATAGGTTCAACTGGTGCGCCTTGTTGGGATGATGCTTC CTCATAGGTTCAACTGGTGTGCCTTGTTGGGATGATGCTTC < 41bp 0.534602037104244 0.734915517643997 NA NA prediction 0.400626961079506 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128696374 chrX:128696373 nonsynonymous SNV 0.995 5 20 hm7G_associated_SNPs_38669 2 0 1 0 1 OCRL chrX:128696361 3'AG 128696361 Downstream 13bp 35596 chr2 179204432 179204432 1 + C T COAD 179204433 + 179204413 179204453 41 TATTTCAAAGAAAGACAAGCGGGTCACAAGACGATGGAGAA TATTTCAAAGAAAGACAAGTGGGTCACAAGACGATGGAGAA < 41bp 0.545480517690662 0.745793817277389 NA NA prediction 0.400626599173454 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179204433 chr2:179204432 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38670 0 0 1 0 2 OSBPL6 chr2:179204399 3'AG 179204399 Downstream 34bp 35597 chr2 179204432 179204432 1 + C T COAD 179204433 + 179204413 179204453 41 TATTTCAAAGAAAGACAAGCGGGTCACAAGACGATGGAGAA TATTTCAAAGAAAGACAAGTGGGTCACAAGACGATGGAGAA < 41bp 0.545480517690662 0.745793817277389 NA NA prediction 0.400626599173454 Functional Gain - OSBPL6 ENSG00000079156 CDS Human protein_coding chr2:179204433 chr2:179204432 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38670 0 0 1 0 2 OSBPL6 chr2:179204491 5'GT 179204491 Upstream 60bp 35598 chr14 52782085 52782085 1 + C T SKCM 52782086 + 52782066 52782106 41 CTATCATGACCATCACCTTCGCCGTCTGCTCCTTGCCTTTC CTATCATGACCATCACCTTTGCCGTCTGCTCCTTGCCTTTC < 41bp 0.516084173185764 0.716396888563922 NA NA prediction 0.400625430756317 Functional Gain - PTGER2 ENSG00000125384 CDS Human protein_coding chr14:52782086 chr14:52782085 synonymous SNV . 0 20 hm7G_associated_SNPs_38671 0 0 0 0 1 PTGER2 chr14:52782109 5'GT 52782109 Upstream 25bp 35599 chr6 132194066 132194066 1 + C T CESC 132194067 + 132194047 132194087 41 CTGTTTGCAATTTCAGTGCCGGGAACCAAACCAGCACTTCA CTGTTTGCAATTTCAGTGCTGGGAACCAAACCAGCACTTCA < 41bp 0.537618788133442 0.73792938309185 NA NA prediction 0.400621189916814 Functional Gain - ENPP1 ENSG00000197594 CDS Human protein_coding chr6:132194067 chr6:132194066 nonsynonymous SNV 0.896 3 20 hm7G_associated_SNPs_38673 0 0 1 0 1 ENPP1 chr6:132194063 3'AG 132194063 Downstream 4bp 35600 chr1 12780908 12780908 1 + C T GBM 12780909 + 12780889 12780929 41 CCACCATGGCATATGCTCTCGTTTGTGCAAGGAGAGTGACT CCACCATGGCATATGCTCTTGTTTGTGCAAGGAGAGTGACT < 41bp 0.52153227419888 0.721841530292425 NA NA prediction 0.40061851218709 Functional Gain - AADACL3 ENSG00000188984 CDS Human protein_coding chr1:12780909 chr1:12780908 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_38674 0 0 0 0 2 AADACL3 chr1:12780885 3'AG 12780885 Downstream 24bp 35601 chr1 12780908 12780908 1 + C T GBM 12780909 + 12780889 12780929 41 CCACCATGGCATATGCTCTCGTTTGTGCAAGGAGAGTGACT CCACCATGGCATATGCTCTTGTTTGTGCAAGGAGAGTGACT < 41bp 0.52153227419888 0.721841530292425 NA NA prediction 0.40061851218709 Functional Gain - AADACL3 ENSG00000188984 CDS Human protein_coding chr1:12780909 chr1:12780908 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_38674 0 0 0 0 2 AADACL3 chr1:12780948 5'GT 12780948 Upstream 41bp 35602 chr16 3706697 3706697 1 + G A rs8176919 3706698 + 3706678 3706718 41 TGATGGCTGCGAGCCCTGCGGGAACGACACCTTCAACCGAG TGATGGCTGCGAGCCCTGCAGGAACGACACCTTCAACCGAG < 41bp 0.576893930394184 0.777201766108567 NA NA prediction 0.400615671428767 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706698 chr16:3706697 nonsynonymous SNV 0.130 4 20 hm7G_associated_SNPs_38676 0 0 0 0 2 DNASE1 chr16:3706639 3'AG 3706639 Downstream 59bp 35603 chr16 3706697 3706697 1 + G A rs8176919 3706698 + 3706678 3706718 41 TGATGGCTGCGAGCCCTGCGGGAACGACACCTTCAACCGAG TGATGGCTGCGAGCCCTGCAGGAACGACACCTTCAACCGAG < 41bp 0.576893930394184 0.777201766108567 NA NA prediction 0.400615671428767 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3706698 chr16:3706697 nonsynonymous SNV 0.130 4 20 hm7G_associated_SNPs_38676 0 0 0 0 2 DNASE1 chr16:3706754 5'GT 3706754 Upstream 58bp 35604 chr11 57457860 57457860 1 + C T UCEC 57457861 + 57457841 57457881 41 ATCCCTGTAGCTGGCCTCACGGGATTTCACGTGGTTCTGGT ATCCCTGTAGCTGGCCTCATGGGATTTCACGTGGTTCTGGT < 41bp 0.561721701158028 0.762028958233097 NA NA prediction 0.400614514150138 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57457861 chr11:57457860 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_38677 0 0 1 0 2 ZDHHC5 chr11:57457807 3'AG 57457807 Downstream 54bp 35605 chr11 57457860 57457860 1 + C T UCEC 57457861 + 57457841 57457881 41 ATCCCTGTAGCTGGCCTCACGGGATTTCACGTGGTTCTGGT ATCCCTGTAGCTGGCCTCATGGGATTTCACGTGGTTCTGGT < 41bp 0.561721701158028 0.762028958233097 NA NA prediction 0.400614514150138 Functional Gain - ZDHHC5 ENSG00000156599 CDS Human protein_coding chr11:57457861 chr11:57457860 nonsynonymous SNV 0.988 4 20 hm7G_associated_SNPs_38677 0 0 1 0 2 ZDHHC5 chr11:57457909 5'GT 57457909 Upstream 50bp 35606 chr22 24437598 24437598 1 + C T COAD 24437599 + 24437579 24437619 41 GTTCACAGGCAGTTTCATCCGGTGATGAGAAAGAGGGGTTG GTTCACAGGCAGTTTCATCTGGTGATGAGAAAGAGGGGTTG < 41bp 0.54064901430561 0.740955428100294 NA NA prediction 0.400612827589367 Functional Gain - CABIN1 ENSG00000099991 CDS Human protein_coding chr22:24437599 chr22:24437598 synonymous SNV . 0 20 hm7G_associated_SNPs_38678 0 0 1 0 1 CABIN1 chr22:24437587 3'AG 24437587 Downstream 12bp 35607 chr5 43161649 43161649 1 + G T STAD 43161650 + 43161630 43161670 41 TACCAGCAAGTACCGTCAAGGTGACAGAAAAGGGCAGATTA TACCAGCAAGTACCGTCAATGTGACAGAAAAGGGCAGATTA < 41bp 0.587796471528894 0.788102342442463 NA NA prediction 0.400611741827137 Functional Gain - ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43161650 chr5:43161649 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38680 0 0 1 0 2 ZNF131 chr5:43161708 5'GT 43161708 Upstream 60bp 35608 chr5 43161649 43161649 1 + G T STAD 43161650 + 43161630 43161670 41 TACCAGCAAGTACCGTCAAGGTGACAGAAAAGGGCAGATTA TACCAGCAAGTACCGTCAATGTGACAGAAAAGGGCAGATTA < 41bp 0.587796471528894 0.788102342442463 NA NA prediction 0.400611741827137 Functional Gain - ZNF131 ENSG00000172262 CDS Human protein_coding chr5:43161650 chr5:43161649 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38680 0 0 1 0 2 ZNF131 chr5:43161715 5'GT 43161715 Upstream 67bp 35609 chrX 70349967 70349967 1 + C T UCEC 70349968 + 70349948 70349988 41 GTGTTGAGTAGTGCCCAGGCGCAGCGCCTCATGCAGCTCAT GTGTTGAGTAGTGCCCAGGTGCAGCGCCTCATGCAGCTCAT < 41bp 0.48440335739839 0.700303961350168 NA NA prediction 0.400607922700336 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70349968 chrX:70349967 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_38683 0 0 0 0 2 MED12 chrX:70349885 3'AG 70349885 Downstream 83bp 35610 chrX 70349967 70349967 1 + C T UCEC 70349968 + 70349948 70349988 41 GTGTTGAGTAGTGCCCAGGCGCAGCGCCTCATGCAGCTCAT GTGTTGAGTAGTGCCCAGGTGCAGCGCCTCATGCAGCTCAT < 41bp 0.48440335739839 0.700303961350168 NA NA prediction 0.400607922700336 Functional Gain - MED12 ENSG00000184634 CDS Human protein_coding chrX:70349968 chrX:70349967 nonsynonymous SNV 0.980 5 20 hm7G_associated_SNPs_38683 0 0 0 0 2 MED12 chrX:70350064 5'GT 70350064 Upstream 98bp 35611 chr2 30785079 30785079 1 + C T UCEC 30785080 + 30785060 30785100 41 AGGATGACAAGAGCCATTTCGAAGACATGATTGATTACTTT AGGATGACAAGAGCCATTTTGAAGACATGATTGATTACTTT < 41bp 0.490137442644679 0.70030362220095 NA NA prediction 0.400607244401899 Functional Gain - LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30785080 chr2:30785079 synonymous SNV . 0 20 hm7G_associated_SNPs_38684 0 0 1 0 2 LCLAT1 chr2:30785012 3'AG 30785012 Downstream 68bp 35612 chr2 30785079 30785079 1 + C T UCEC 30785080 + 30785060 30785100 41 AGGATGACAAGAGCCATTTCGAAGACATGATTGATTACTTT AGGATGACAAGAGCCATTTTGAAGACATGATTGATTACTTT < 41bp 0.490137442644679 0.70030362220095 NA NA prediction 0.400607244401899 Functional Gain - LCLAT1 ENSG00000172954 CDS Human protein_coding chr2:30785080 chr2:30785079 synonymous SNV . 0 20 hm7G_associated_SNPs_38684 0 0 1 0 2 LCLAT1 chr2:30785158 5'GT 30785158 Upstream 80bp 35613 chr6 169051407 169051407 1 + C T LUAD 169051408 + 169051388 169051428 41 TTCTGACCAGCGTTCTGGACGCGCTGTCCACGGACATGGTC TTCTGACCAGCGTTCTGGATGCGCTGTCCACGGACATGGTC < 41bp 0.482475008193436 0.700303597164333 NA NA prediction 0.400607194328666 Functional Gain - SMOC2 ENSG00000112562 CDS Human protein_coding chr6:169051408 chr6:169051407 synonymous SNV . 0 20 hm7G_associated_SNPs_38685 0 0 0 0 2 SMOC2 chr6:169051361 3'AG 169051361 Downstream 47bp 35614 chr6 169051407 169051407 1 + C T LUAD 169051408 + 169051388 169051428 41 TTCTGACCAGCGTTCTGGACGCGCTGTCCACGGACATGGTC TTCTGACCAGCGTTCTGGATGCGCTGTCCACGGACATGGTC < 41bp 0.482475008193436 0.700303597164333 NA NA prediction 0.400607194328666 Functional Gain - SMOC2 ENSG00000112562 CDS Human protein_coding chr6:169051408 chr6:169051407 synonymous SNV . 0 20 hm7G_associated_SNPs_38685 0 0 0 0 2 SMOC2 chr6:169051463 5'GT 169051463 Upstream 57bp 35615 chr1 12251047 12251047 1 + C T ESCA 12251048 + 12251028 12251068 41 GTCTTCTGTACCAAGACCTCGGACACCGTGTGTGACTCCTG GTCTTCTGTACCAAGACCTTGGACACCGTGTGTGACTCCTG < 41bp 0.546377664975174 0.746679913784029 NA NA prediction 0.40060449761771 Functional Gain - TNFRSF1B ENSG00000028137 CDS Human protein_coding chr1:12251048 chr1:12251047 nonsynonymous SNV 0.578 1 20 hm7G_associated_SNPs_38686 0 0 0 0 2 TNFRSF1B chr1:12251014 3'AG 12251014 Downstream 34bp 35616 chr1 12251047 12251047 1 + C T ESCA 12251048 + 12251028 12251068 41 GTCTTCTGTACCAAGACCTCGGACACCGTGTGTGACTCCTG GTCTTCTGTACCAAGACCTTGGACACCGTGTGTGACTCCTG < 41bp 0.546377664975174 0.746679913784029 NA NA prediction 0.40060449761771 Functional Gain - TNFRSF1B ENSG00000028137 CDS Human protein_coding chr1:12251048 chr1:12251047 nonsynonymous SNV 0.578 1 20 hm7G_associated_SNPs_38686 0 0 0 0 2 TNFRSF1B chr1:12251142 5'GT 12251142 Upstream 96bp 35617 chr16 22142928 22142928 1 + C T STAD 22142929 + 22142909 22142949 41 GGCCCTGAACCTGCGGTGTCGGGGCAGCAGGAACGTTCTCA GGCCCTGAACCTGCGGTGTTGGGGCAGCAGGAACGTTCTCA < 41bp 0.486105571546027 0.700301595456496 NA NA prediction 0.400603190912992 Functional Gain - VWA3A ENSG00000175267 CDS Human protein_coding chr16:22142929 chr16:22142928 nonsynonymous SNV 0.051 0 20 hm7G_associated_SNPs_38687 0 0 0 0 1 VWA3A chr16:22142906 3'AG 22142906 Downstream 23bp 35618 chr1 180144484 180144484 1 + C T SKCM 180144485 + 180144465 180144505 41 GCCTTTACCAAGAACGGCTCGGGAGCAGTATTTCCAGGTGG GCCTTTACCAAGAACGGCTTGGGAGCAGTATTTCCAGGTGG < 41bp 0.531776332112949 0.732075911500725 NA NA prediction 0.400599158775553 Functional Gain - QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180144485 chr1:180144484 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_38689 0 0 1 0 2 QSOX1 chr1:180144456 3'AG 180144456 Downstream 29bp 35619 chr1 180144484 180144484 1 + C T SKCM 180144485 + 180144465 180144505 41 GCCTTTACCAAGAACGGCTCGGGAGCAGTATTTCCAGGTGG GCCTTTACCAAGAACGGCTTGGGAGCAGTATTTCCAGGTGG < 41bp 0.531776332112949 0.732075911500725 NA NA prediction 0.400599158775553 Functional Gain - QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180144485 chr1:180144484 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_38689 0 0 1 0 2 QSOX1 chr1:180144501 5'GT 180144501 Upstream 18bp 35620 chr19 49671273 49671273 1 + G A LUAD 49671274 + 49671254 49671294 41 CCTGGTGGTGTCAGTGCTGGGGGGATCGGGGGGCCCCGTCC CCTGGTGGTGTCAGTGCTGAGGGGATCGGGGGGCCCCGTCC < 41bp 0.467277729650327 0.70029782927363 NA NA prediction 0.40059565854726 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671274 chr19:49671273 nonsynonymous SNV 0.928 4 20 hm7G_associated_SNPs_38691 0 0 1 0 2 TRPM4 chr19:49671174 3'AG 49671174 Downstream 100bp 35621 chr19 49671273 49671273 1 + G A LUAD 49671274 + 49671254 49671294 41 CCTGGTGGTGTCAGTGCTGGGGGGATCGGGGGGCCCCGTCC CCTGGTGGTGTCAGTGCTGAGGGGATCGGGGGGCCCCGTCC < 41bp 0.467277729650327 0.70029782927363 NA NA prediction 0.40059565854726 Functional Gain - TRPM4 ENSG00000130529 CDS Human protein_coding chr19:49671274 chr19:49671273 nonsynonymous SNV 0.928 4 20 hm7G_associated_SNPs_38691 0 0 1 0 2 TRPM4 chr19:49671354 5'GT 49671354 Upstream 82bp 35622 chr17 48247549 48247549 1 + G T UCEC 48247550 + 48247530 48247570 41 AGATGAGGTGCCCACCCCAGGTGATGGGATCCTGGAGCATG AGATGAGGTGCCCACCCCATGTGATGGGATCCTGGAGCATG < 41bp 0.353811803814205 0.700294439297879 NA NA prediction 0.400588878595759 Functional Gain - SGCA ENSG00000108823 CDS Human protein_coding chr17:48247550 chr17:48247549 nonsynonymous SNV 0.162 5 20 hm7G_associated_SNPs_38692 0 0 0 0 1 SGCA chr17:48247504 3'AG 48247504 Downstream 46bp 35623 chr5 176011928 176011928 1 + C T UCEC 176011929 + 176011909 176011949 41 TCAACCAGAGCAAAGCCATCGACTACGAGGCCTGTGACCTG TCAACCAGAGCAAAGCCATTGACTACGAGGCCTGTGACCTG < 41bp 0.521823340603669 0.72211664219925 NA NA prediction 0.400586603191163 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176011929 chr5:176011928 synonymous SNV . 0 20 hm7G_associated_SNPs_38695 0 0 0 0 1 CDHR2 chr5:176012016 5'GT 176012016 Upstream 89bp 35624 chr1 156594495 156594495 1 + G A SKCM 156594496 + 156594476 156594516 41 CCGTGCGGCGGCCGAGGCCGGCCCGGGATCCGCAGCTACGG CCGTGCGGCGGCCGAGGCCAGCCCGGGATCCGCAGCTACGG < 41bp 0.619449875047337 0.81974313039879 NA NA prediction 0.400586510702905 Functional Gain - HAPLN2 ENSG00000132702 CDS Human protein_coding chr1:156594496 chr1:156594495 nonsynonymous SNV 0.028 0 20 hm7G_associated_SNPs_38696 0 0 1 0 1 HAPLN2 chr1:156594575 5'GT 156594575 Upstream 81bp 35625 chr11 18451373 18451373 1 + C T LUAD 18451374 + 18451354 18451394 41 TCGCCTTGCCCTGGTCCAACGTAATGTGGCTATAATGAAAT TCGCCTTGCCCTGGTCCAATGTAATGTGGCTATAATGAAAT < 41bp 0.520539005982362 0.720831776168194 NA NA prediction 0.400585540371664 Functional Gain - LDHC ENSG00000166796 CDS Human protein_coding chr11:18451374 chr11:18451373 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_38697 0 0 0 0 2 LDHC chr11:18451284 3'AG 18451284 Downstream 90bp 35626 chr11 18451373 18451373 1 + C T LUAD 18451374 + 18451354 18451394 41 TCGCCTTGCCCTGGTCCAACGTAATGTGGCTATAATGAAAT TCGCCTTGCCCTGGTCCAATGTAATGTGGCTATAATGAAAT < 41bp 0.520539005982362 0.720831776168194 NA NA prediction 0.400585540371664 Functional Gain - LDHC ENSG00000166796 CDS Human protein_coding chr11:18451374 chr11:18451373 nonsynonymous SNV 0.997 5 20 hm7G_associated_SNPs_38697 0 0 0 0 2 LDHC chr11:18451457 5'GT 18451457 Upstream 85bp 35627 chr5 73128260 73128260 1 + C T COAD 73128261 + 73128241 73128281 41 ATGGAGGTGATGAAGTCTACGCTAACTGTATGGTGATTGAT ATGGAGGTGATGAAGTCTATGCTAACTGTATGGTGATTGAT < 41bp 0.484061100649743 0.700287642927756 NA NA prediction 0.400575285855512 Functional Gain - ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73128261 chr5:73128260 synonymous SNV . 0 20 hm7G_associated_SNPs_38701 0 0 1 0 2 ARHGEF28 chr5:73128163 3'AG 73128163 Downstream 98bp 35628 chr5 73128260 73128260 1 + C T COAD 73128261 + 73128241 73128281 41 ATGGAGGTGATGAAGTCTACGCTAACTGTATGGTGATTGAT ATGGAGGTGATGAAGTCTATGCTAACTGTATGGTGATTGAT < 41bp 0.484061100649743 0.700287642927756 NA NA prediction 0.400575285855512 Functional Gain - ARHGEF28 ENSG00000214944 CDS Human protein_coding chr5:73128261 chr5:73128260 synonymous SNV . 0 20 hm7G_associated_SNPs_38701 0 0 1 0 2 ARHGEF28 chr5:73128284 5'GT 73128284 Upstream 25bp 35629 chr19 47876048 47876048 1 + C T rs562906654 47876049 + 47876029 47876069 41 CTGTGCTCACCATCGCAGCCGCACTTAGCGTCCAGTCGCCC CTGTGCTCACCATCGCAGCTGCACTTAGCGTCCAGTCGCCC < 41bp 0.563332265452652 0.763619846100388 NA NA prediction 0.400575161295471 Functional Gain - DHX34 ENSG00000134815 CDS Human protein_coding chr19:47876049 chr19:47876048 synonymous SNV . 0 20 hm7G_associated_SNPs_38702 0 0 1 0 1 DHX34 chr19:47875987 3'AG 47875987 Downstream 62bp 35630 chr12 13220139 13220139 1 + C T SKCM 13220140 + 13220120 13220160 41 TTTTGTTCAGGCCCAAAATCGAGACAGCTCACCACCTTCTC TTTTGTTCAGGCCCAAAATTGAGACAGCTCACCACCTTCTC < 41bp 0.488839642212931 0.700284806122177 NA NA prediction 0.400569612244354 Functional Gain - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13220140 chr12:13220139 stopgain 1.000 0 20 hm7G_associated_SNPs_38703 0 0 0 0 2 FAM234B chr12:13220089 3'AG 13220089 Downstream 51bp 35631 chr12 13220139 13220139 1 + C T SKCM 13220140 + 13220120 13220160 41 TTTTGTTCAGGCCCAAAATCGAGACAGCTCACCACCTTCTC TTTTGTTCAGGCCCAAAATTGAGACAGCTCACCACCTTCTC < 41bp 0.488839642212931 0.700284806122177 NA NA prediction 0.400569612244354 Functional Gain - FAM234B ENSG00000084444 CDS Human protein_coding chr12:13220140 chr12:13220139 stopgain 1.000 0 20 hm7G_associated_SNPs_38703 0 0 0 0 2 FAM234B chr12:13220230 5'GT 13220230 Upstream 92bp 35632 chr12 124181040 124181040 1 + C T THCA 124181041 + 124181021 124181061 41 ACTTTACATCTTTGGCAATCGGGTAATCCGGTTTGGTCATT ACTTTACATCTTTGGCAATTGGGTAATCCGGTTTGGTCATT < 41bp 0.49690888721651 0.700284731254424 NA NA prediction 0.400569462508848 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181041 chr12:124181040 nonsynonymous SNV 0.236 2 20 hm7G_associated_SNPs_38704 0 0 1 0 2 TCTN2 chr12:124180962 3'AG 124180962 Downstream 79bp 35633 chr12 124181040 124181040 1 + C T THCA 124181041 + 124181021 124181061 41 ACTTTACATCTTTGGCAATCGGGTAATCCGGTTTGGTCATT ACTTTACATCTTTGGCAATTGGGTAATCCGGTTTGGTCATT < 41bp 0.49690888721651 0.700284731254424 NA NA prediction 0.400569462508848 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124181041 chr12:124181040 nonsynonymous SNV 0.236 2 20 hm7G_associated_SNPs_38704 0 0 1 0 2 TCTN2 chr12:124181042 5'GT 124181042 Upstream 3bp 35634 chr19 17425179 17425179 1 + C T COAD 17425180 + 17425160 17425200 41 CAGTCTACCTGCCTACCCGCGAGTACCCGTCTGAACAGAGT CAGTCTACCTGCCTACCCGTGAGTACCCGTCTGAACAGAGT < 41bp 0.539031729940882 0.739313398384247 NA NA prediction 0.40056333688673 Functional Gain - DDA1 ENSG00000130311 CDS Human protein_coding chr19:17425180 chr19:17425179 synonymous SNV . 0 20 hm7G_associated_SNPs_38708 0 0 0 0 1 DDA1 chr19:17425147 3'AG 17425147 Downstream 33bp 35635 chr15 42693865 42693865 1 + C T HNSC 42693866 + 42693846 42693886 41 CTGGACCAACCCTCAGTACCGTCTGAAGCTCCTGGAGGAGG CTGGACCAACCCTCAGTACTGTCTGAAGCTCCTGGAGGAGG < 41bp 0.511134246975919 0.711415621681731 NA NA prediction 0.400562749411623 Functional Gain - CAPN3 ENSG00000092529 CDS Human protein_coding chr15:42693866 chr15:42693865 nonsynonymous SNV 0.997 4 20 hm7G_associated_SNPs_38709 0 0 0 0 1 CAPN3 chr15:42693839 3'AG 42693839 Downstream 27bp 35636 chr7 144068341 144068341 1 + C T SKCM 144068342 + 144068322 144068362 41 CCAACTTTCAACTTCACTCCGGGCCACACTTTCCAACCAGG CCAACTTTCAACTTCACTCTGGGCCACACTTTCCAACCAGG < 41bp 0.482863539069426 0.700281365661512 NA NA prediction 0.400562731323023 Functional Gain - ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144068342 chr7:144068341 nonsynonymous SNV 0.704 3 20 hm7G_associated_SNPs_38710 0 0 0 0 2 ARHGEF5 chr7:144068254 3'AG 144068254 Downstream 88bp 35637 chr7 144068341 144068341 1 + C T SKCM 144068342 + 144068322 144068362 41 CCAACTTTCAACTTCACTCCGGGCCACACTTTCCAACCAGG CCAACTTTCAACTTCACTCTGGGCCACACTTTCCAACCAGG < 41bp 0.482863539069426 0.700281365661512 NA NA prediction 0.400562731323023 Functional Gain - ARHGEF5 ENSG00000050327 CDS Human protein_coding chr7:144068342 chr7:144068341 nonsynonymous SNV 0.704 3 20 hm7G_associated_SNPs_38710 0 0 0 0 2 ARHGEF5 chr7:144068414 5'GT 144068414 Upstream 74bp 35638 chr12 133294106 133294106 1 + C T UCEC 133294107 + 133294087 133294127 41 ATCGTCCATTCGTCTATGACGCGCGCCATAGAGACCACCGA ATCGTCCATTCGTCTATGATGCGCGCCATAGAGACCACCGA < 41bp 0.533274977091303 0.733555438688539 NA NA prediction 0.400560923194473 Functional Gain - PGAM5 ENSG00000247077 CDS Human other chr12:133294107 chr12:133294106 nonsynonymous SNV 0.244 4 20 hm7G_associated_SNPs_38711 0 0 1 0 2 PGAM5 chr12:133294025 3'AG 133294025 Downstream 82bp 35639 chr12 133294106 133294106 1 + C T UCEC 133294107 + 133294087 133294127 41 ATCGTCCATTCGTCTATGACGCGCGCCATAGAGACCACCGA ATCGTCCATTCGTCTATGATGCGCGCCATAGAGACCACCGA < 41bp 0.533274977091303 0.733555438688539 NA NA prediction 0.400560923194473 Functional Gain - PGAM5 ENSG00000247077 CDS Human protein_coding chr12:133294107 chr12:133294106 nonsynonymous SNV 0.244 4 20 hm7G_associated_SNPs_38711 0 0 1 0 2 PGAM5 chr12:133294150 5'GT 133294150 Upstream 45bp 35640 chrX 152815040 152815040 1 + C T PRAD 152815041 + 152815021 152815061 41 GCCATCTGCTCCGACAAGACGGGCACGCTCACCACCAACCG GCCATCTGCTCCGACAAGATGGGCACGCTCACCACCAACCG < 41bp 0.542265818126318 0.742545318008972 NA NA prediction 0.400558999765309 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152815041 chrX:152815040 nonsynonymous SNV 0.984 5 20 hm7G_associated_SNPs_38712 0 0 0 0 1 ATP2B3 chrX:152814955 3'AG 152814955 Downstream 86bp 35641 chr6 42141469 42141469 1 + C T rs150710654 42141470 + 42141450 42141490 41 ACTCACCCTCTATGAGTTCCGCCAGTTCTTCGGCCTCAAGA ACTCACCCTCTATGAGTTCTGCCAGTTCTTCGGCCTCAAGA < 41bp 0.55633860965877 0.756616890394435 NA NA prediction 0.400556561471329 Functional Gain - GUCA1A ENSG00000048545 CDS Human protein_coding chr6:42141470 chr6:42141469 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38713 0 0 0 0 1 GUCA1A chr6:42141552 5'GT 42141552 Upstream 84bp 35642 chr9 5073781 5073781 1 + C T rs375442615 5073782 + 5073762 5073802 41 GAGTATGTGTCTGTGGAGACGAGAGTAAGTAAAACTACAGG GAGTATGTGTCTGTGGAGATGAGAGTAAGTAAAACTACAGG < 41bp 0.523905060241889 0.724179867115245 NA NA prediction 0.400549613746712 Functional Gain - JAK2 ENSG00000096968 CDS Human protein_coding chr9:5073782 chr9:5073781 synonymous SNV . 0 20 hm7G_associated_SNPs_38715 0 0 1 0 1 JAK2 chr9:5073698 3'AG 5073698 Downstream 84bp 35643 chr19 19166701 19166701 1 + G A LUSC 19166702 + 19166682 19166722 41 GGGCTGTGGCAGCACTGCAGGCCATGAAGGCACACCCGCAG GGGCTGTGGCAGCACTGCAAGCCATGAAGGCACACCCGCAG < 41bp 0.583453690930365 0.783728406324654 NA NA prediction 0.400549430788578 Functional Gain - ARMC6 ENSG00000105676 CDS Human protein_coding chr19:19166702 chr19:19166701 synonymous SNV . 0 20 hm7G_associated_SNPs_38716 0 0 1 0 1 ARMC6 chr19:19166737 5'GT 19166737 Upstream 37bp 35644 chr21 46931094 46931094 1 + C T COAD 46931095 + 46931075 46931115 41 TCCGCTGAAGCCCGGGGCACGCATCTTCTCCTTTGACGGCA TCCGCTGAAGCCCGGGGCATGCATCTTCTCCTTTGACGGCA < 41bp 0.493679931257347 0.700274694729905 NA NA prediction 0.400549389459811 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931095 chr21:46931094 nonsynonymous SNV 0.451 4 20 hm7G_associated_SNPs_38717 0 0 1 0 2 COL18A1 chr21:46931025 3'AG 46931025 Downstream 70bp 35645 chr21 46931094 46931094 1 + C T COAD 46931095 + 46931075 46931115 41 TCCGCTGAAGCCCGGGGCACGCATCTTCTCCTTTGACGGCA TCCGCTGAAGCCCGGGGCATGCATCTTCTCCTTTGACGGCA < 41bp 0.493679931257347 0.700274694729905 NA NA prediction 0.400549389459811 Functional Gain - COL18A1 ENSG00000182871 CDS Human protein_coding chr21:46931095 chr21:46931094 nonsynonymous SNV 0.451 4 20 hm7G_associated_SNPs_38717 0 0 1 0 2 COL18A1 chr21:46931140 5'GT 46931140 Upstream 47bp 35646 chr12 15747954 15747954 1 + C T GBM 15747955 + 15747935 15747975 41 GCATCAGTGATGTCATATACGAGAATGTTAGCAAGTCCTAG GCATCAGTGATGTCATATATGAGAATGTTAGCAAGTCCTAG < 41bp 0.525282615920109 0.725556277983744 NA NA prediction 0.400547324127271 Functional Gain - PTPRO ENSG00000151490 CDS Human protein_coding chr12:15747955 chr12:15747954 synonymous SNV . 0 20 hm7G_associated_SNPs_38718 0 0 0 0 2 PTPRO chr12:15747871 3'AG 15747871 Downstream 84bp 35647 chr12 15747954 15747954 1 + C T GBM 15747955 + 15747935 15747975 41 GCATCAGTGATGTCATATACGAGAATGTTAGCAAGTCCTAG GCATCAGTGATGTCATATATGAGAATGTTAGCAAGTCCTAG < 41bp 0.525282615920109 0.725556277983744 NA NA prediction 0.400547324127271 Functional Gain - PTPRO ENSG00000151490 CDS Human protein_coding chr12:15747955 chr12:15747954 synonymous SNV . 0 20 hm7G_associated_SNPs_38718 0 0 0 0 2 PTPRO chr12:15747991 5'GT 15747991 Upstream 38bp 35648 chr10 12131003 12131003 1 + C T LGG 12131004 + 12130984 12131024 41 GCTGATGTTCCGTAAAATGCGAGGCTTAAGTGAATTTCCAG GCTGATGTTCCGTAAAATGTGAGGCTTAAGTGAATTTCCAG < 41bp 0.548900305521557 0.749173821647377 NA NA prediction 0.400547032251639 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12131004 chr10:12131003 stopgain 0.998 1 20 hm7G_associated_SNPs_38719 0 0 1 0 1 DHTKD1 chr10:12130985 3'AG 12130985 Downstream 19bp 35649 chr18 74672717 74672717 1 + G T UCEC 74672718 + 74672698 74672738 41 TGCACATGAAGAAGCACACGGGGGAGCGGCCCTACAAGTGT TGCACATGAAGAAGCACACTGGGGAGCGGCCCTACAAGTGT < 41bp 0.357923644381621 0.700272396344861 NA NA prediction 0.400544792689723 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74672718 chr18:74672717 synonymous SNV . 0 20 hm7G_associated_SNPs_38720 0 0 1 0 2 ZNF236 chr18:74672635 3'AG 74672635 Downstream 83bp 35650 chr18 74672717 74672717 1 + G T UCEC 74672718 + 74672698 74672738 41 TGCACATGAAGAAGCACACGGGGGAGCGGCCCTACAAGTGT TGCACATGAAGAAGCACACTGGGGAGCGGCCCTACAAGTGT < 41bp 0.357923644381621 0.700272396344861 NA NA prediction 0.400544792689723 Functional Gain - ZNF236 ENSG00000130856 CDS Human protein_coding chr18:74672718 chr18:74672717 synonymous SNV . 0 20 hm7G_associated_SNPs_38720 0 0 1 0 2 ZNF236 chr18:74672811 5'GT 74672811 Upstream 95bp 35651 chr2 219612347 219612347 1 + C T KIRP 219612348 + 219612328 219612368 41 ACAAACCCTACCTCATCAGCGGCAGCAAGTTTGACCTGCGG ACAAACCCTACCTCATCAGTGGCAGCAAGTTTGACCTGCGG < 41bp 0.54513481797529 0.745406558419978 NA NA prediction 0.400543480889375 Functional Gain - TTLL4 ENSG00000135912 CDS Human protein_coding chr2:219612348 chr2:219612347 synonymous SNV . 0 20 hm7G_associated_SNPs_38722 0 0 0 0 1 TTLL4 chr2:219612320 3'AG 219612320 Downstream 28bp 35652 chr3 49737143 49737143 1 + C T STAD 49737144 + 49737124 49737164 41 GAGCTCCAAGTGGCGGTTGCGGGGCCAGCCCACCGTCCTCC GAGCTCCAAGTGGCGGTTGTGGGGCCAGCCCACCGTCCTCC < 41bp 0.572581701993234 0.772853000651139 NA NA prediction 0.400542597315811 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49737144 chr3:49737143 nonsynonymous SNV 0.922 1 20 hm7G_associated_SNPs_38724 0 0 1 0 2 RNF123 chr3:49737101 3'AG 49737101 Downstream 43bp 35653 chr3 49737143 49737143 1 + C T STAD 49737144 + 49737124 49737164 41 GAGCTCCAAGTGGCGGTTGCGGGGCCAGCCCACCGTCCTCC GAGCTCCAAGTGGCGGTTGTGGGGCCAGCCCACCGTCCTCC < 41bp 0.572581701993234 0.772853000651139 NA NA prediction 0.400542597315811 Functional Gain - RNF123 ENSG00000164068 CDS Human protein_coding chr3:49737144 chr3:49737143 nonsynonymous SNV 0.922 1 20 hm7G_associated_SNPs_38724 0 0 1 0 2 RNF123 chr3:49737205 5'GT 49737205 Upstream 63bp 35654 chr16 70503177 70503177 1 + C T STAD 70503178 + 70503158 70503198 41 TAGCGGGTTATCTGCAGAGCGCCCGGGCCCAGCTGTGGAGG TAGCGGGTTATCTGCAGAGTGCCCGGGCCCAGCTGTGGAGG < 41bp 0.540294799477143 0.74056541014744 NA NA prediction 0.400541221340595 Functional Gain - FUK ENSG00000157353 CDS Human protein_coding chr16:70503178 chr16:70503177 synonymous SNV . 0 20 hm7G_associated_SNPs_38725 0 0 1 0 1 FUK chr16:70503226 5'GT 70503226 Upstream 50bp 35655 chr17 21825525 21825525 1 + G A HNSC 21825526 + 21825506 21825546 41 GAAACCACAGGCAGAGTCCGGGGAAGCAGCGCGGCATCCCA GAAACCACAGGCAGAGTCCAGGGAAGCAGCGCGGCATCCCA < 41bp 0.525662981098095 0.725933426665529 NA NA prediction 0.400540891134869 Functional Gain - FAM27E5 ENSG00000178130 ncRNA_exonic Human lincRNA chr17:21825526 chr17:21825525 . . 0 20 hm7G_associated_SNPs_38726 0 0 0 0 1 FAM27E5 chr17:21825574 5'GT 21825574 Upstream 50bp 35656 chr14 76107379 76107379 1 + C T GBM 76107380 + 76107360 76107400 41 AATCAGAAGGCATCTCCTCCGGCCTCCTCAACATATCTGCA AATCAGAAGGCATCTCCTCTGGCCTCCTCAACATATCTGCA < 41bp 0.559439044489473 0.759709110692813 NA NA prediction 0.400540132406679 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107380 chr14:76107379 synonymous SNV . 0 20 hm7G_associated_SNPs_38727 0 0 0 0 2 FLVCR2 chr14:76107298 3'AG 76107298 Downstream 82bp 35657 chr14 76107379 76107379 1 + C T GBM 76107380 + 76107360 76107400 41 AATCAGAAGGCATCTCCTCCGGCCTCCTCAACATATCTGCA AATCAGAAGGCATCTCCTCTGGCCTCCTCAACATATCTGCA < 41bp 0.559439044489473 0.759709110692813 NA NA prediction 0.400540132406679 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107380 chr14:76107379 synonymous SNV . 0 20 hm7G_associated_SNPs_38727 0 0 0 0 2 FLVCR2 chr14:76107403 5'GT 76107403 Upstream 25bp 35658 chr10 3189816 3189816 1 - C T rs201454628 3189815 - 3189795 3189835 41 GCATCCATCAGGGCAGGCCGGACCCTCACGCCCGCAGGGGA GCATCCATCAGGGCAGGCCAGACCCTCACGCCCGCAGGGGA < 41bp 0.504405035204882 0.704674849555271 NA NA prediction 0.400539628700779 Functional Gain - PITRM1 ENSG00000107959 CDS Human protein_coding chr10:3189815 chr10:3189816 nonsynonymous SNV 0.005 0 20 hm7G_associated_SNPs_38728 0 0 1 0 1 PITRM1 chr10:3189764 5'GT 3189764 Upstream 53bp 35659 chr20 39794347 39794347 1 + C T UCEC 39794348 + 39794328 39794368 41 AGCTAGGGGCAGGGCGTGACGGGCGTCACATCGCTGAGCGC AGCTAGGGGCAGGGCGTGATGGGCGTCACATCGCTGAGCGC < 41bp 0.570337076829325 0.770606814345519 NA NA prediction 0.400539475032389 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39794348 chr20:39794347 synonymous SNV . 0 20 hm7G_associated_SNPs_38729 0 0 1 0 1 PLCG1 chr20:39794279 3'AG 39794279 Downstream 69bp 35660 chr19 18234789 18234789 1 + C T rs56022120 18234790 + 18234770 18234810 41 CGTCTGCAGGAGTTCCTGACGGCCTACGCGCCCGGCGCCCG CGTCTGCAGGAGTTCCTGATGGCCTACGCGCCCGGCGCCCG < 41bp 0.558603831001176 0.758871786876286 NA NA prediction 0.400535911750219 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18234790 chr19:18234789 nonsynonymous SNV 0.003 0 20 hm7G_associated_SNPs_38730 0 0 0 0 1 MAST3 chr19:18234749 3'AG 18234749 Downstream 41bp 35661 chr19 50775825 50775825 1 + C T UCEC 50775826 + 50775806 50775846 41 CCTGCCTCCAGACCGCCTACGGAAGGAGGAGAAGGGTCGCC CCTGCCTCCAGACCGCCTATGGAAGGAGGAGAAGGGTCGCC < 41bp 0.544229099440137 0.744495867060439 NA NA prediction 0.400533535240603 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50775826 chr19:50775825 nonsynonymous SNV 0.523 3 20 hm7G_associated_SNPs_38731 1 0 0 0 1 MYH14 chr19:50775817 3'AG 50775817 Downstream 9bp 35662 chr8 11839853 11839853 1 + G A COAD 11839854 + 11839834 11839874 41 CCACAAGGAGCGTCCTCTTGGCCCTCGTGGTCCTTAACTTA CCACAAGGAGCGTCCTCTTAGCCCTCGTGGTCCTTAACTTA < 41bp 0.554501279735233 0.75476782791032 NA NA prediction 0.400533096350175 Functional Gain - DEFB135 ENSG00000205883 CDS Human protein_coding chr8:11839854 chr8:11839853 synonymous SNV . 0 20 hm7G_associated_SNPs_38732 0 0 0 0 1 DEFB135 chr8:11839893 5'GT 11839893 Upstream 41bp 35663 chr20 33584193 33584193 1 + G T UCEC 33584194 + 33584174 33584214 41 CTGCGCTGGACGAGTCAGTGGCCCGGCTGACCAAGGAGAAG CTGCGCTGGACGAGTCAGTTGCCCGGCTGACCAAGGAGAAG < 41bp 0.341678539442748 0.700266353977878 NA NA prediction 0.400532707955757 Functional Gain - MYH7B ENSG00000078814 CDS Human protein_coding chr20:33584194 chr20:33584193 synonymous SNV . 0 20 hm7G_associated_SNPs_38733 0 0 0 0 1 MYH7B chr20:33584149 3'AG 33584149 Downstream 45bp 35664 chr17 17891358 17891358 1 + C T SKCM 17891359 + 17891339 17891379 41 TCGACTCCCTGGACGCCCTCGTCAAGCTGCAGGTGTTGTCG TCGACTCCCTGGACGCCCTTGTCAAGCTGCAGGTGTTGTCG < 41bp 0.524096404578558 0.724360134434407 NA NA prediction 0.4005274597117 Functional Gain - DRC3 ENSG00000171962 CDS Human protein_coding chr17:17891359 chr17:17891358 synonymous SNV . 0 20 hm7G_associated_SNPs_38735 0 0 0 0 1 DRC3 chr17:17891412 5'GT 17891412 Upstream 55bp 35665 chr4 25677815 25677815 1 + C T LUAD 25677816 + 25677796 25677836 41 TTGCTGTGGTACCCGATCCCGTTCACTCGCCTGCCCATCCG TTGCTGTGGTACCCGATCCTGTTCACTCGCCTGCCCATCCG < 41bp 0.521754031949023 0.722015952517435 NA NA prediction 0.400523841136823 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25677816 chr4:25677815 nonsynonymous SNV 0.969 4 20 hm7G_associated_SNPs_38738 0 0 0 0 1 SLC34A2 chr4:25677757 3'AG 25677757 Downstream 59bp 35666 chr1 160718303 160718303 1 + C T UCEC 160718304 + 160718284 160718324 41 AGTACGTGCTGCATGTCTACGGTGAGCAAAATCAGTTCCAA AGTACGTGCTGCATGTCTATGGTGAGCAAAATCAGTTCCAA < 41bp 0.532091579533968 0.732352562765705 NA NA prediction 0.400521966463474 Functional Gain - SLAMF7 ENSG00000026751 CDS Human protein_coding chr1:160718304 chr1:160718303 synonymous SNV . 0 20 hm7G_associated_SNPs_38739 0 0 0 0 1 SLAMF7 chr1:160718304 5'GT 160718304 Upstream 2bp 35667 chr19 17643167 17643167 1 + C T COAD 17643168 + 17643148 17643188 41 TCTGTGTTCTGCGTGGGGACGGCCGCCTAGAGTGGTTCAGC TCTGTGTTCTGCGTGGGGATGGCCGCCTAGAGTGGTTCAGC < 41bp 0.497556408961849 0.700257978531739 NA NA prediction 0.400515957063477 Functional Gain - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17643168 chr19:17643167 synonymous SNV . 0 20 hm7G_associated_SNPs_38742 0 0 0 0 2 FAM129C chr19:17643072 3'AG 17643072 Downstream 96bp 35668 chr19 17643167 17643167 1 + C T COAD 17643168 + 17643148 17643188 41 TCTGTGTTCTGCGTGGGGACGGCCGCCTAGAGTGGTTCAGC TCTGTGTTCTGCGTGGGGATGGCCGCCTAGAGTGGTTCAGC < 41bp 0.497556408961849 0.700257978531739 NA NA prediction 0.400515957063477 Functional Gain - FAM129C ENSG00000167483 CDS Human protein_coding chr19:17643168 chr19:17643167 synonymous SNV . 0 20 hm7G_associated_SNPs_38742 0 0 0 0 2 FAM129C chr19:17643197 5'GT 17643197 Upstream 31bp 35669 chr17 29298451 29298451 1 + G A rs7224960 29298452 + 29298432 29298472 41 CGAGGCCCCGGCGCCGCCCGGAACTGCAGCGGGTAGGGAGG CGAGGCCCCGGCGCCGCCCAGAACTGCAGCGGGTAGGGAGG < 41bp 0.475755968674288 0.700257944118092 NA NA prediction 0.400515888236183 Functional Gain - RNF135 ENSG00000181481 CDS Human protein_coding chr17:29298452 chr17:29298451 synonymous SNV . 0 20 hm7G_associated_SNPs_38743 0 0 0 0 1 RNF135 chr17:29298463 5'GT 29298463 Upstream 13bp 35670 chr5 55082400 55082400 1 + G T LUAD 55082401 + 55082381 55082421 41 TAACAACATTGCTAAAGCTGGTTATACTAAGCTTACTCCTG TAACAACATTGCTAAAGCTTGTTATACTAAGCTTACTCCTG < 41bp 0.382992289881479 0.70025701506369 NA NA prediction 0.400514030127379 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55082401 chr5:55082400 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38745 0 0 0 0 2 DDX4 chr5:55082346 3'AG 55082346 Downstream 55bp 35671 chr5 55082400 55082400 1 + G T LUAD 55082401 + 55082381 55082421 41 TAACAACATTGCTAAAGCTGGTTATACTAAGCTTACTCCTG TAACAACATTGCTAAAGCTTGTTATACTAAGCTTACTCCTG < 41bp 0.382992289881479 0.70025701506369 NA NA prediction 0.400514030127379 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55082401 chr5:55082400 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38745 0 0 0 0 2 DDX4 chr5:55082498 5'GT 55082498 Upstream 99bp 35672 chr14 60976612 60976612 1 + G A STAD 60976613 + 60976593 60976633 41 TGAGCTCGCCCAGGCAACCGGACTGACCCCTACGCAGGTGG TGAGCTCGCCCAGGCAACCAGACTGACCCCTACGCAGGTGG < 41bp 0.537069990834106 0.73732665631373 NA NA prediction 0.400513330959247 Functional Gain - SIX6 ENSG00000184302 CDS Human protein_coding chr14:60976613 chr14:60976612 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_38746 0 0 0 0 1 SIX6 chr14:60976688 5'GT 60976688 Upstream 77bp 35673 chrX 10153149 10153149 1 + C T CESC 10153150 + 10153130 10153170 41 CCGTTCCCTGATGTGGGGACGTATGAGGACTTCCACACCAT CCGTTCCCTGATGTGGGGATGTATGAGGACTTCCACACCAT < 41bp 0.492568939961754 0.700256649604415 NA NA prediction 0.40051329920883 Functional Gain - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10153150 chrX:10153149 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_38747 0 0 0 0 2 CLCN4 chrX:10153062 3'AG 10153062 Downstream 88bp 35674 chrX 10153149 10153149 1 + C T CESC 10153150 + 10153130 10153170 41 CCGTTCCCTGATGTGGGGACGTATGAGGACTTCCACACCAT CCGTTCCCTGATGTGGGGATGTATGAGGACTTCCACACCAT < 41bp 0.492568939961754 0.700256649604415 NA NA prediction 0.40051329920883 Functional Gain - CLCN4 ENSG00000073464 CDS Human protein_coding chrX:10153150 chrX:10153149 nonsynonymous SNV 0.974 3 20 hm7G_associated_SNPs_38747 0 0 0 0 2 CLCN4 chrX:10153216 5'GT 10153216 Upstream 68bp 35675 chr19 42083910 42083910 1 + C T rs377527952 42083911 + 42083891 42083931 41 CTCACCATCTCCGTGTATACGGTGAGTGATTCCTCCGTGCC CTCACCATCTCCGTGTATATGGTGAGTGATTCCTCCGTGCC < 41bp 0.502868827491426 0.703124601645145 NA NA prediction 0.400511548307438 Functional Gain - CEACAM21 ENSG00000007129 CDS Human protein_coding chr19:42083911 chr19:42083910 synonymous SNV . 0 20 hm7G_associated_SNPs_38748 0 0 0 1 1 CEACAM21 chr19:42083911 5'GT 42083911 Upstream 2bp 35676 chr19 8436013 8436013 1 + G A UCEC 8436014 + 8435994 8436034 41 GGCCCTGGGAAGCCTACAAGGCGGGGTTTGGGGATCCCCAC GGCCCTGGGAAGCCTACAAAGCGGGGTTTGGGGATCCCCAC < 41bp 0.59212725533176 0.792382901871049 NA NA prediction 0.400511293078579 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436014 chr19:8436013 synonymous SNV . 0 20 hm7G_associated_SNPs_38749 0 0 0 0 2 ANGPTL4 chr19:8435940 3'AG 8435940 Downstream 74bp 35677 chr19 8436013 8436013 1 + G A UCEC 8436014 + 8435994 8436034 41 GGCCCTGGGAAGCCTACAAGGCGGGGTTTGGGGATCCCCAC GGCCCTGGGAAGCCTACAAAGCGGGGTTTGGGGATCCCCAC < 41bp 0.59212725533176 0.792382901871049 NA NA prediction 0.400511293078579 Functional Gain - ANGPTL4 ENSG00000167772 CDS Human protein_coding chr19:8436014 chr19:8436013 synonymous SNV . 0 20 hm7G_associated_SNPs_38749 0 0 0 0 2 ANGPTL4 chr19:8436035 5'GT 8436035 Upstream 23bp 35678 chr19 58991075 58991075 1 + C T rs140158663 58991076 + 58991056 58991096 41 ATGCGATGCTGGAGAAGTACGGCACAGTGGTCTCCCTGGGT ATGCGATGCTGGAGAAGTATGGCACAGTGGTCTCCCTGGGT < 41bp 0.50443458615925 0.704689845353957 NA NA prediction 0.400510518389414 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991076 chr19:58991075 synonymous SNV . 0 20 hm7G_associated_SNPs_38750 0 0 0 0 2 ZNF446 chr19:58991010 3'AG 58991010 Downstream 66bp 35679 chr19 58991075 58991075 1 + C T rs140158663 58991076 + 58991056 58991096 41 ATGCGATGCTGGAGAAGTACGGCACAGTGGTCTCCCTGGGT ATGCGATGCTGGAGAAGTATGGCACAGTGGTCTCCCTGGGT < 41bp 0.50443458615925 0.704689845353957 NA NA prediction 0.400510518389414 Functional Gain - ZNF446 ENSG00000083838 CDS Human protein_coding chr19:58991076 chr19:58991075 synonymous SNV . 0 20 hm7G_associated_SNPs_38750 0 0 0 0 2 ZNF446 chr19:58991094 5'GT 58991094 Upstream 20bp 35680 chr19 30934550 30934550 1 + C T READ 30934551 + 30934531 30934571 41 TGAGTGGCCCCGTCCTCAACGGCCAGTATGCCATGAGTCAG TGAGTGGCCCCGTCCTCAATGGCCAGTATGCCATGAGTCAG < 41bp 0.496851704959426 0.700253943999492 NA NA prediction 0.400507887998983 Functional Gain - ZNF536 ENSG00000198597 CDS Human protein_coding chr19:30934551 chr19:30934550 synonymous SNV . 0 20 hm7G_associated_SNPs_38751 0 0 1 0 1 ZNF536 chr19:30934468 3'AG 30934468 Downstream 83bp 35681 chr22 24220040 24220040 1 + C T COAD 24220041 + 24220021 24220061 41 TCATTGACTGTGGAGACACCGAGGCCTGCCTGGCAGGTGAG TCATTGACTGTGGAGACACTGAGGCCTGCCTGGCAGGTGAG < 41bp 0.566308730874074 0.766561421355268 NA NA prediction 0.400505380962388 Functional Gain - SLC2A11 ENSG00000133460 CDS Human protein_coding chr22:24220041 chr22:24220040 synonymous SNV . 0 20 hm7G_associated_SNPs_38753 0 0 1 0 1 SLC2A11 chr22:24220056 5'GT 24220056 Upstream 17bp 35682 chr19 55377852 55377852 1 + C T UCEC 55377853 + 55377833 55377873 41 GTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATAG GTAATGGACCAAGAGCCTGTGGGGGACAGAACAGTGAATAG < 41bp 0.498641713089193 0.700252462632029 NA NA prediction 0.400504925264059 Functional Gain - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377853 chr19:55377852 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_38754 0 0 0 0 2 KIR3DL2 chr19:55377825 3'AG 55377825 Downstream 28bp 35683 chr19 55377852 55377852 1 + C T UCEC 55377853 + 55377833 55377873 41 GTAATGGACCAAGAGCCTGCGGGGGACAGAACAGTGAATAG GTAATGGACCAAGAGCCTGTGGGGGACAGAACAGTGAATAG < 41bp 0.498641713089193 0.700252462632029 NA NA prediction 0.400504925264059 Functional Gain - KIR3DL2 ENSG00000167633;ENSG00000240403 CDS Human other chr19:55377853 chr19:55377852 nonsynonymous SNV 0.000 3 20 hm7G_associated_SNPs_38754 0 0 0 0 2 KIR3DL2 chr19:55377877 5'GT 55377877 Upstream 26bp 35684 chr9 136405808 136405808 1 + C T COAD 136405809 + 136405789 136405829 41 TCATGGTCCCCGCCCGCGACGGCACATCCTGCAAGCTCACT TCATGGTCCCCGCCCGCGATGGCACATCCTGCAAGCTCACT < 41bp 0.484408989975962 0.700248716177551 NA NA prediction 0.400497432355102 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405809 chr9:136405808 synonymous SNV . 0 20 hm7G_associated_SNPs_38758 0 0 0 0 2 ADAMTSL2 chr9:136405720 3'AG 136405720 Downstream 89bp 35685 chr9 136405808 136405808 1 + C T COAD 136405809 + 136405789 136405829 41 TCATGGTCCCCGCCCGCGACGGCACATCCTGCAAGCTCACT TCATGGTCCCCGCCCGCGATGGCACATCCTGCAAGCTCACT < 41bp 0.484408989975962 0.700248716177551 NA NA prediction 0.400497432355102 Functional Gain - ADAMTSL2 ENSG00000197859 CDS Human protein_coding chr9:136405809 chr9:136405808 synonymous SNV . 0 20 hm7G_associated_SNPs_38758 0 0 0 0 2 ADAMTSL2 chr9:136405865 5'GT 136405865 Upstream 58bp 35686 chr1 45115359 45115359 1 + C T UCEC 45115360 + 45115340 45115380 41 GAAGATTCAGCTGTGACCACGTTTGAGGCTCTGAAGGCTCG GAAGATTCAGCTGTGACCATGTTTGAGGCTCTGAAGGCTCG < 41bp 0.529450929777211 0.729698826706811 NA NA prediction 0.400495793859201 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45115360 chr1:45115359 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_38759 0 0 1 0 2 RNF220 chr1:45115333 3'AG 45115333 Downstream 27bp 35687 chr1 45115359 45115359 1 + C T UCEC 45115360 + 45115340 45115380 41 GAAGATTCAGCTGTGACCACGTTTGAGGCTCTGAAGGCTCG GAAGATTCAGCTGTGACCATGTTTGAGGCTCTGAAGGCTCG < 41bp 0.529450929777211 0.729698826706811 NA NA prediction 0.400495793859201 Functional Gain - RNF220 ENSG00000187147 CDS Human protein_coding chr1:45115360 chr1:45115359 nonsynonymous SNV 0.996 4 20 hm7G_associated_SNPs_38759 0 0 1 0 2 RNF220 chr1:45115441 5'GT 45115441 Upstream 83bp 35688 chr17 61559041 61559041 1 + G A rs56394458 61559042 + 61559022 61559062 41 GCTGGAGAAGCCGGCCGACGGGCGGGAAGTGGTGTGCCACG GCTGGAGAAGCCGGCCGACAGGCGGGAAGTGGTGTGCCACG < 41bp 0.58070141132397 0.780946723336495 NA NA prediction 0.400490624025049 Functional Gain - ACE ENSG00000159640 CDS Human protein_coding chr17:61559042 chr17:61559041 nonsynonymous SNV 0.878 4 20 hm7G_associated_SNPs_38761 1 0 0 0 1 ACE chr17:61559099 5'GT 61559099 Upstream 59bp 35689 chr16 67236358 67236358 1 + C T STAD 67236359 + 67236339 67236379 41 GCCAAGACCAGAGCTTCCACGAGCTCTTCTGTGTGGGCATC GCCAAGACCAGAGCTTCCATGAGCTCTTCTGTGTGGGCATC < 41bp 0.541769812556612 0.74201465631927 NA NA prediction 0.400489687525316 Functional Gain - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236359 chr16:67236358 synonymous SNV . 0 20 hm7G_associated_SNPs_38762 0 0 0 0 2 ELMO3 chr16:67236300 3'AG 67236300 Downstream 59bp 35690 chr16 67236358 67236358 1 + C T STAD 67236359 + 67236339 67236379 41 GCCAAGACCAGAGCTTCCACGAGCTCTTCTGTGTGGGCATC GCCAAGACCAGAGCTTCCATGAGCTCTTCTGTGTGGGCATC < 41bp 0.541769812556612 0.74201465631927 NA NA prediction 0.400489687525316 Functional Gain - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67236359 chr16:67236358 synonymous SNV . 0 20 hm7G_associated_SNPs_38762 0 0 0 0 2 ELMO3 chr16:67236436 5'GT 67236436 Upstream 79bp 35691 chr18 28968937 28968937 1 + C T GBM 28968938 + 28968918 28968958 41 GATAACGCTCCAGTCTTTTCGCAAAGTGTATACACAGCCAG GATAACGCTCCAGTCTTTTTGCAAAGTGTATACACAGCCAG < 41bp 0.545819118897257 0.746061733545229 NA NA prediction 0.400485229295944 Functional Gain - DSG4 ENSG00000175065 CDS Human protein_coding chr18:28968938 chr18:28968937 nonsynonymous SNV 0.720 1 20 hm7G_associated_SNPs_38766 0 0 0 0 1 DSG4 chr18:28968981 5'GT 28968981 Upstream 45bp 35692 chr19 50964880 50964880 1 + C T LUSC 50964881 + 50964861 50964901 41 GGGCAATGAATACTATTTCCGAGTTTACACCGAGAACATCT GGGCAATGAATACTATTTCTGAGTTTACACCGAGAACATCT < 41bp 0.553519907450848 0.753762305805937 NA NA prediction 0.400484796710177 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50964881 chr19:50964880 stopgain 0.797 0 20 hm7G_associated_SNPs_38767 0 0 1 0 2 MYBPC2 chr19:50964799 3'AG 50964799 Downstream 82bp 35693 chr19 50964880 50964880 1 + C T LUSC 50964881 + 50964861 50964901 41 GGGCAATGAATACTATTTCCGAGTTTACACCGAGAACATCT GGGCAATGAATACTATTTCTGAGTTTACACCGAGAACATCT < 41bp 0.553519907450848 0.753762305805937 NA NA prediction 0.400484796710177 Functional Gain - MYBPC2 ENSG00000086967 CDS Human protein_coding chr19:50964881 chr19:50964880 stopgain 0.797 0 20 hm7G_associated_SNPs_38767 0 0 1 0 2 MYBPC2 chr19:50964958 5'GT 50964958 Upstream 79bp 35694 chr17 27027500 27027500 1 + C T LUSC 27027501 + 27027481 27027521 41 CCAGCCAGTACGGCTATGGCGGCAGTGGAGGCGGCAGCAGT CCAGCCAGTACGGCTATGGTGGCAGTGGAGGCGGCAGCAGT < 41bp 0.55193276634848 0.752173053902321 NA NA prediction 0.400480575107683 Functional Gain - SUPT6H ENSG00000109111 CDS Human protein_coding chr17:27027501 chr17:27027500 synonymous SNV . 0 20 hm7G_associated_SNPs_38768 0 0 1 0 1 SUPT6H chr17:27027530 5'GT 27027530 Upstream 31bp 35695 chr22 38315156 38315156 1 + C T rs374661268 38315157 + 38315137 38315177 41 TGCAGCGCTACCTGGCTGACGGCAGGCTGTACCATCGCCAC TGCAGCGCTACCTGGCTGATGGCAGGCTGTACCATCGCCAC < 41bp 0.515478340203621 0.715715559298403 NA NA prediction 0.400474438189563 Functional Gain - MICALL1 ENSG00000100139 CDS Human protein_coding chr22:38315157 chr22:38315156 synonymous SNV . 0 20 hm7G_associated_SNPs_38770 0 0 1 0 1 MICALL1 chr22:38315185 5'GT 38315185 Upstream 30bp 35696 chr17 53150372 53150372 1 + C T UCEC 53150373 + 53150353 53150393 41 GGACTATGAAGAAGTGATCCGTCTGTTAGAGGCCAAGATTA GGACTATGAAGAAGTGATCTGTCTGTTAGAGGCCAAGATTA < 41bp 0.507934940610934 0.70817145531438 NA NA prediction 0.400473029406893 Functional Gain - STXBP4 ENSG00000166263 CDS Human protein_coding chr17:53150373 chr17:53150372 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_38771 0 0 1 0 1 STXBP4 chr17:53150437 5'GT 53150437 Upstream 66bp 35697 chr11 130332450 130332450 1 + C T rs372542959 130332451 + 130332431 130332471 41 TGCCCGAGGATCTGCCGGGCGCCAGCTACACCCTGAGCCAG TGCCCGAGGATCTGCCGGGTGCCAGCTACACCCTGAGCCAG < 41bp 0.487853196188861 0.700234592201473 NA NA prediction 0.400469184402945 Functional Gain - ADAMTS15 ENSG00000166106 CDS Human protein_coding chr11:130332451 chr11:130332450 synonymous SNV . 0 20 hm7G_associated_SNPs_38773 0 0 0 0 1 ADAMTS15 chr11:130332392 3'AG 130332392 Downstream 59bp 35698 chr7 794228 794228 1 + C T LGG 794229 + 794209 794249 41 TCCCTTTTTCGTTCCAGAGCGCCGCCCTGTGCTGGGCTGCC TCCCTTTTTCGTTCCAGAGTGCCGCCCTGTGCTGGGCTGCC < 41bp 0.546462404403189 0.746696458032639 NA NA prediction 0.400468107258899 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:794229 chr7:794228 nonsynonymous SNV 0.002 2 20 hm7G_associated_SNPs_38774 0 0 1 0 1 DNAAF5 chr7:794226 3'AG 794226 Downstream 3bp 35699 chr5 94936712 94936712 1 + C T GBM 94936713 + 94936693 94936733 41 TGCCTCCACCTACATGCTTCGAACTAACCACTGGAAATATA TGCCTCCACCTACATGCTTTGAACTAACCACTGGAAATATA < 41bp 0.489938798048747 0.700232422408185 NA NA prediction 0.40046484481637 Functional Gain - ARSK ENSG00000164291 CDS Human protein_coding chr5:94936713 chr5:94936712 stopgain 0.744 1 20 hm7G_associated_SNPs_38776 0 0 1 3 1 ARSK chr5:94936775 5'GT 94936775 Upstream 64bp 35700 chr18 8636316 8636316 1 + C T UCEC 8636317 + 8636297 8636337 41 AGGATAACTTCAATGTGGACGAGATATTTTTGAAACTTGTC AGGATAACTTCAATGTGGATGAGATATTTTTGAAACTTGTC < 41bp 0.529812657887592 0.730044818036954 NA NA prediction 0.400464320298725 Functional Gain - RAB12 ENSG00000206418 CDS Human protein_coding chr18:8636317 chr18:8636316 synonymous SNV . 0 20 hm7G_associated_SNPs_38777 0 0 1 0 2 RAB12 chr18:8636251 3'AG 8636251 Downstream 66bp 35701 chr18 8636316 8636316 1 + C T UCEC 8636317 + 8636297 8636337 41 AGGATAACTTCAATGTGGACGAGATATTTTTGAAACTTGTC AGGATAACTTCAATGTGGATGAGATATTTTTGAAACTTGTC < 41bp 0.529812657887592 0.730044818036954 NA NA prediction 0.400464320298725 Functional Gain - RAB12 ENSG00000206418 CDS Human protein_coding chr18:8636317 chr18:8636316 synonymous SNV . 0 20 hm7G_associated_SNPs_38777 0 0 1 0 2 RAB12 chr18:8636355 5'GT 8636355 Upstream 40bp 35702 chr7 87005030 87005030 1 + C T READ 87005031 + 87005011 87005051 41 AACTAGTGAGGAGCGAACTCGATGGGCTAAGGTTCTGATTT AACTAGTGAGGAGCGAACTTGATGGGCTAAGGTTCTGATTT < 41bp 0.500878259025034 0.701109756468338 NA NA prediction 0.400462994886608 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:87005031 chr7:87005030 stopgain 0.992 0 20 hm7G_associated_SNPs_38778 0 0 1 0 2 CROT chr7:87004948 3'AG 87004948 Downstream 83bp 35703 chr7 87005030 87005030 1 + C T READ 87005031 + 87005011 87005051 41 AACTAGTGAGGAGCGAACTCGATGGGCTAAGGTTCTGATTT AACTAGTGAGGAGCGAACTTGATGGGCTAAGGTTCTGATTT < 41bp 0.500878259025034 0.701109756468338 NA NA prediction 0.400462994886608 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:87005031 chr7:87005030 stopgain 0.992 0 20 hm7G_associated_SNPs_38778 0 0 1 0 2 CROT chr7:87005041 5'GT 87005041 Upstream 12bp 35704 chr19 3275854 3275854 1 + G A SKCM 3275855 + 3275835 3275875 41 TGGGTGTCGCCGCCCACAGGGGACCGGAAGCTGTTCGTGGG TGGGTGTCGCCGCCCACAGAGGACCGGAAGCTGTTCGTGGG < 41bp 0.579276348648957 0.779507338515393 NA NA prediction 0.400461979732871 Functional Gain - CELF5 ENSG00000161082 CDS Human protein_coding chr19:3275855 chr19:3275854 nonsynonymous SNV 0.999 0 20 hm7G_associated_SNPs_38779 0 0 0 0 1 CELF5 chr19:3275854 3'AG 3275854 Downstream 1bp 35705 chr6 88046852 88046852 1 + C T PAAD 88046853 + 88046833 88046873 41 GCGCACAACAACCTTATTTCGTGCTGTGAATCCAGAGCTCT GCGCACAACAACCTTATTTTGTGCTGTGAATCCAGAGCTCT < 41bp 0.516870481671177 0.717100384424929 NA NA prediction 0.400459805507503 Functional Gain - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046853 chr6:88046852 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38781 0 0 1 0 1 SMIM8 chr6:88046884 5'GT 88046884 Upstream 33bp 35706 chr9 127217210 127217210 1 + C T UCEC 127217211 + 127217191 127217231 41 CTTCTGGAGCATGTCCTGGCGATGGAGATGGCTCCCCTGGG CTTCTGGAGCATGTCCTGGTGATGGAGATGGCTCCCCTGGG < 41bp 0.553539898111432 0.753769155471028 NA NA prediction 0.400458514719193 Functional Gain - PSMB7;NR5A1 ENSG00000180264 CDS Human protein_coding chr9:127217211 chr9:127217210 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_38782 0 0 0 0 1 PSMB7;NR5A1 chr9:127217122 3'AG 127217122 Downstream 89bp 35707 chr9 132980191 132980191 1 + C T UCEC 132980192 + 132980172 132980212 41 ATCTACAAGCAATTCTTCCCGTTCGGAGACCCCACCAAGTT ATCTACAAGCAATTCTTCCTGTTCGGAGACCCCACCAAGTT < 41bp 0.526484039086484 0.72671206968001 NA NA prediction 0.400456061187052 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132980192 chr9:132980191 nonsynonymous SNV 0.776 4 20 hm7G_associated_SNPs_38783 0 0 1 0 2 NCS1 chr9:132980111 3'AG 132980111 Downstream 81bp 35708 chr9 132980191 132980191 1 + C T UCEC 132980192 + 132980172 132980212 41 ATCTACAAGCAATTCTTCCCGTTCGGAGACCCCACCAAGTT ATCTACAAGCAATTCTTCCTGTTCGGAGACCCCACCAAGTT < 41bp 0.526484039086484 0.72671206968001 NA NA prediction 0.400456061187052 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132980192 chr9:132980191 nonsynonymous SNV 0.776 4 20 hm7G_associated_SNPs_38783 0 0 1 0 2 NCS1 chr9:132980249 5'GT 132980249 Upstream 59bp 35709 chr7 143036387 143036387 1 + C T UCEC 143036388 + 143036368 143036408 41 CCACTATGCCCATACCCTGCGGAGGCTTCATGCCTGTGTTT CCACTATGCCCATACCCTGTGGAGGCTTCATGCCTGTGTTT < 41bp 0.485166971813564 0.700226445330141 NA NA prediction 0.400452890660282 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143036388 chr7:143036387 synonymous SNV . 0 20 hm7G_associated_SNPs_38787 0 0 0 0 2 CLCN1 chr7:143036346 3'AG 143036346 Downstream 42bp 35710 chr7 143036387 143036387 1 + C T UCEC 143036388 + 143036368 143036408 41 CCACTATGCCCATACCCTGCGGAGGCTTCATGCCTGTGTTT CCACTATGCCCATACCCTGTGGAGGCTTCATGCCTGTGTTT < 41bp 0.485166971813564 0.700226445330141 NA NA prediction 0.400452890660282 Functional Gain - CLCN1 ENSG00000188037 CDS Human protein_coding chr7:143036388 chr7:143036387 synonymous SNV . 0 20 hm7G_associated_SNPs_38787 0 0 0 0 2 CLCN1 chr7:143036415 5'GT 143036415 Upstream 29bp 35711 chr5 157102158 157102158 1 + C T UCEC 157102159 + 157102139 157102179 41 ACCCAAGAGCCATTTATCTCGGGTGATTATTCATGATAACC ACCCAAGAGCCATTTATCTTGGGTGATTATTCATGATAACC < 41bp 0.490618095820579 0.70022643070621 NA NA prediction 0.40045286141242 Functional Gain - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157102159 chr5:157102158 nonsynonymous SNV 0.857 1 20 hm7G_associated_SNPs_38788 0 0 0 0 2 C5orf52 chr5:157102100 3'AG 157102100 Downstream 59bp 35712 chr5 157102158 157102158 1 + C T UCEC 157102159 + 157102139 157102179 41 ACCCAAGAGCCATTTATCTCGGGTGATTATTCATGATAACC ACCCAAGAGCCATTTATCTTGGGTGATTATTCATGATAACC < 41bp 0.490618095820579 0.70022643070621 NA NA prediction 0.40045286141242 Functional Gain - C5orf52 ENSG00000187658 CDS Human protein_coding chr5:157102159 chr5:157102158 nonsynonymous SNV 0.857 1 20 hm7G_associated_SNPs_38788 0 0 0 0 2 C5orf52 chr5:157102208 5'GT 157102208 Upstream 51bp 35713 chr7 100609627 100609627 1 + G T LUAD 100609628 + 100609608 100609648 41 GGTCGGGGGCCTGACGGCCGGCGCCGCGCTGCTGGTGCTGC GGTCGGGGGCCTGACGGCCTGCGCCGCGCTGCTGGTGCTGC < 41bp 0.380780324257413 0.700225800967592 NA NA prediction 0.400451601935184 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609628 chr7:100609627 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_38790 0 0 0 0 2 MUC3A chr7:100609539 3'AG 100609539 Downstream 89bp 35714 chr7 100609627 100609627 1 + G T LUAD 100609628 + 100609608 100609648 41 GGTCGGGGGCCTGACGGCCGGCGCCGCGCTGCTGGTGCTGC GGTCGGGGGCCTGACGGCCTGCGCCGCGCTGCTGGTGCTGC < 41bp 0.380780324257413 0.700225800967592 NA NA prediction 0.400451601935184 Functional Gain - MUC3A ENSG00000169894 CDS Human protein_coding chr7:100609628 chr7:100609627 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_38790 0 0 0 0 2 MUC3A chr7:100609712 5'GT 100609712 Upstream 86bp 35715 chr1 47606542 47606542 1 + C T COAD 47606543 + 47606523 47606563 41 GATATGGGGAGGCAAAGTTCGTGTCCAGCTCTATGACCCTG GATATGGGGAGGCAAAGTTTGTGTCCAGCTCTATGACCCTG < 41bp 0.50641186871914 0.706637359310802 NA NA prediction 0.400450981183324 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47606543 chr1:47606542 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_38792 0 0 0 0 2 CYP4A22 chr1:47606452 3'AG 47606452 Downstream 91bp 35716 chr1 47606542 47606542 1 + C T COAD 47606543 + 47606523 47606563 41 GATATGGGGAGGCAAAGTTCGTGTCCAGCTCTATGACCCTG GATATGGGGAGGCAAAGTTTGTGTCCAGCTCTATGACCCTG < 41bp 0.50641186871914 0.706637359310802 NA NA prediction 0.400450981183324 Functional Gain - CYP4A22 ENSG00000162365 CDS Human protein_coding chr1:47606543 chr1:47606542 nonsynonymous SNV 0.002 1 20 hm7G_associated_SNPs_38792 0 0 0 0 2 CYP4A22 chr1:47606593 5'GT 47606593 Upstream 52bp 35717 chr4 8288479 8288479 1 + C T PAAD 8288480 + 8288460 8288500 41 AAAGACATCGACAAGAAGTCGGACATTGCCACCATCAAGAT AAAGACATCGACAAGAAGTTGGACATTGCCACCATCAAGAT < 41bp 0.555680995367662 0.75590578740758 NA NA prediction 0.400449584079834 Functional Gain - HTRA3 ENSG00000170801 CDS Human protein_coding chr4:8288480 chr4:8288479 nonsynonymous SNV 0.811 2 20 hm7G_associated_SNPs_38793 0 0 0 0 1 HTRA3 chr4:8288510 5'GT 8288510 Upstream 32bp 35718 chr18 163395 163395 1 + C T PRAD 163396 + 163376 163416 41 TTCAAGGCTCAGCTGTTTGCGTTGACTGGAGTCCAGCCTGC TTCAAGGCTCAGCTGTTTGTGTTGACTGGAGTCCAGCCTGC < 41bp 0.535157101824603 0.735381887903902 NA NA prediction 0.400449572158598 Functional Gain - USP14 ENSG00000101557 CDS Human protein_coding chr18:163396 chr18:163395 nonsynonymous SNV 0.921 4 20 hm7G_associated_SNPs_38794 0 0 1 0 2 USP14 chr18:163308 3'AG 163308 Downstream 88bp 35719 chr18 163395 163395 1 + C T PRAD 163396 + 163376 163416 41 TTCAAGGCTCAGCTGTTTGCGTTGACTGGAGTCCAGCCTGC TTCAAGGCTCAGCTGTTTGTGTTGACTGGAGTCCAGCCTGC < 41bp 0.535157101824603 0.735381887903902 NA NA prediction 0.400449572158598 Functional Gain - USP14 ENSG00000101557 CDS Human protein_coding chr18:163396 chr18:163395 nonsynonymous SNV 0.921 4 20 hm7G_associated_SNPs_38794 0 0 1 0 2 USP14 chr18:163453 5'GT 163453 Upstream 59bp 35720 chr19 17881640 17881640 1 + C T rs200074791 17881641 + 17881621 17881661 41 GGCGGCAGAGAGCCTGCGGCGCTCAGTGGAAAAATACAACT GGCGGCAGAGAGCCTGCGGTGCTCAGTGGAAAAATACAACT < 41bp 0.550830839552534 0.751055411150623 NA NA prediction 0.400449143196179 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17881641 chr19:17881640 nonsynonymous SNV 0.836 1 20 hm7G_associated_SNPs_38795 0 0 1 0 2 FCHO1 chr19:17881601 3'AG 17881601 Downstream 40bp 35721 chr19 17881640 17881640 1 + C T rs200074791 17881641 + 17881621 17881661 41 GGCGGCAGAGAGCCTGCGGCGCTCAGTGGAAAAATACAACT GGCGGCAGAGAGCCTGCGGTGCTCAGTGGAAAAATACAACT < 41bp 0.550830839552534 0.751055411150623 NA NA prediction 0.400449143196179 Functional Gain - FCHO1 ENSG00000130475 CDS Human protein_coding chr19:17881641 chr19:17881640 nonsynonymous SNV 0.836 1 20 hm7G_associated_SNPs_38795 0 0 1 0 2 FCHO1 chr19:17881705 5'GT 17881705 Upstream 66bp 35722 chr2 103380833 103380833 1 + C T SKCM 103380834 + 103380814 103380854 41 ACACATGCTTACCTGTCTCCGTACCCCTTCATGAGAGGCGA ACACATGCTTACCTGTCTCTGTACCCCTTCATGAGAGGCGA < 41bp 0.541681575238512 0.741905916726354 NA NA prediction 0.400448682975685 Functional Gain - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380834 chr2:103380833 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_38796 0 0 1 0 2 TMEM182 chr2:103380788 3'AG 103380788 Downstream 46bp 35723 chr2 103380833 103380833 1 + C T SKCM 103380834 + 103380814 103380854 41 ACACATGCTTACCTGTCTCCGTACCCCTTCATGAGAGGCGA ACACATGCTTACCTGTCTCTGTACCCCTTCATGAGAGGCGA < 41bp 0.541681575238512 0.741905916726354 NA NA prediction 0.400448682975685 Functional Gain - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103380834 chr2:103380833 nonsynonymous SNV 0.944 4 20 hm7G_associated_SNPs_38796 0 0 1 0 2 TMEM182 chr2:103380886 5'GT 103380886 Upstream 54bp 35724 chr7 150739135 150739135 1 + C T STAD 150739136 + 150739116 150739156 41 AGAGGTGTACACAGCCGCCCGGGAAGCGAATGCTCACGAGT AGAGGTGTACACAGCCGCCTGGGAAGCGAATGCTCACGAGT < 41bp 0.539943824354028 0.740166329995439 NA NA prediction 0.400445011282823 Functional Gain - ABCB8 ENSG00000197150 CDS Human protein_coding chr7:150739136 chr7:150739135 nonsynonymous SNV 0.306 4 20 hm7G_associated_SNPs_38797 0 0 0 0 1 ABCB8 chr7:150739048 3'AG 150739048 Downstream 88bp 35725 chr17 43313548 43313548 1 + C T UCEC 43313549 + 43313529 43313569 41 CCCTGCGGAATTCCCGCATCGTCAGCCAGAAGGACGACGTC CCCTGCGGAATTCCCGCATTGTCAGCCAGAAGGACGACGTC < 41bp 0.522736727633346 0.722956794524059 NA NA prediction 0.400440133781426 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43313549 chr17:43313548 synonymous SNV . 0 20 hm7G_associated_SNPs_38800 0 0 0 0 2 FMNL1 chr17:43313503 3'AG 43313503 Downstream 46bp 35726 chr17 43313548 43313548 1 + C T UCEC 43313549 + 43313529 43313569 41 CCCTGCGGAATTCCCGCATCGTCAGCCAGAAGGACGACGTC CCCTGCGGAATTCCCGCATTGTCAGCCAGAAGGACGACGTC < 41bp 0.522736727633346 0.722956794524059 NA NA prediction 0.400440133781426 Functional Gain - FMNL1 ENSG00000184922 CDS Human protein_coding chr17:43313549 chr17:43313548 synonymous SNV . 0 20 hm7G_associated_SNPs_38800 0 0 0 0 2 FMNL1 chr17:43313611 5'GT 43313611 Upstream 64bp 35727 chr8 1728417 1728417 1 + C T SKCM 1728418 + 1728398 1728438 41 TGTCTTCTCTCCATGCAGGCGGGCTGGTCCGAGTCTCTGTT TGTCTTCTCTCCATGCAGGTGGGCTGGTCCGAGTCTCTGTT < 41bp 0.497964847609026 0.700218063900577 NA NA prediction 0.400436127801154 Functional Gain - CLN8 ENSG00000182372 CDS Human protein_coding chr8:1728418 chr8:1728417 nonsynonymous SNV 0.066 1 20 hm7G_associated_SNPs_38801 0 0 1 0 1 CLN8 chr8:1728416 3'AG 1728416 Downstream 2bp 35728 chr3 11059050 11059050 1 + C T LUSC 11059051 + 11059031 11059071 41 ACACGTGGAAGGGCCGCTTCGACTTCCTCATGTCCTGTGTG ACACGTGGAAGGGCCGCTTTGACTTCCTCATGTCCTGTGTG < 41bp 0.487203850841801 0.700217046120319 NA NA prediction 0.400434092240639 Functional Gain - SLC6A1 ENSG00000157103 CDS Human protein_coding chr3:11059051 chr3:11059050 synonymous SNV . 0 20 hm7G_associated_SNPs_38802 0 0 0 0 1 SLC6A1 chr3:11059135 5'GT 11059135 Upstream 86bp 35729 chr11 117062989 117062989 1 + C T rs12285035 117062990 + 117062970 117063010 41 GTCTTTGGCAAAGGGAACACGGCGTTCTGGATCGTCTTCTC GTCTTTGGCAAAGGGAACATGGCGTTCTGGATCGTCTTCTC < 41bp 0.537355079678222 0.737571547697991 NA NA prediction 0.400432936039538 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117062990 chr11:117062989 nonsynonymous SNV 0.870 0 20 hm7G_associated_SNPs_38804 0 0 1 0 2 SIDT2 chr11:117062970 3'AG 117062970 Downstream 20bp 35730 chr11 117062989 117062989 1 + C T rs12285035 117062990 + 117062970 117063010 41 GTCTTTGGCAAAGGGAACACGGCGTTCTGGATCGTCTTCTC GTCTTTGGCAAAGGGAACATGGCGTTCTGGATCGTCTTCTC < 41bp 0.537355079678222 0.737571547697991 NA NA prediction 0.400432936039538 Functional Gain - SIDT2 ENSG00000149577 CDS Human protein_coding chr11:117062990 chr11:117062989 nonsynonymous SNV 0.870 0 20 hm7G_associated_SNPs_38804 0 0 1 0 2 SIDT2 chr11:117063078 5'GT 117063078 Upstream 90bp 35731 chr12 122406031 122406031 1 + G A STAD 122406032 + 122406012 122406052 41 GCTGCTACGCCTTCACTGCGGGAGGGCACGATCGCTCGGTG GCTGCTACGCCTTCACTGCAGGAGGGCACGATCGCTCGGTG < 41bp 0.549375004133194 0.749589997059382 NA NA prediction 0.400429985852376 Functional Gain - WDR66 ENSG00000158023 CDS Human protein_coding chr12:122406032 chr12:122406031 synonymous SNV . 0 20 hm7G_associated_SNPs_38805 0 0 0 0 1 WDR66 chr12:122406075 5'GT 122406075 Upstream 45bp 35732 chr22 42383244 42383244 1 + C T STAD 42383245 + 42383225 42383265 41 GTGTCAAAATGAAGCTGACCGTCATCGACACCCCAGGCTTT GTGTCAAAATGAAGCTGACTGTCATCGACACCCCAGGCTTT < 41bp 0.518753732215754 0.718968057539754 NA NA prediction 0.400428650648001 Functional Gain - SEPT3 ENSG00000100167 CDS Human protein_coding chr22:42383245 chr22:42383244 synonymous SNV . 0 20 hm7G_associated_SNPs_38806 0 0 0 0 2 SEPT3 chr22:42383210 3'AG 42383210 Downstream 35bp 35733 chr22 42383244 42383244 1 + C T STAD 42383245 + 42383225 42383265 41 GTGTCAAAATGAAGCTGACCGTCATCGACACCCCAGGCTTT GTGTCAAAATGAAGCTGACTGTCATCGACACCCCAGGCTTT < 41bp 0.518753732215754 0.718968057539754 NA NA prediction 0.400428650648001 Functional Gain - SEPT3 ENSG00000100167 CDS Human protein_coding chr22:42383245 chr22:42383244 synonymous SNV . 0 20 hm7G_associated_SNPs_38806 0 0 0 0 2 SEPT3 chr22:42383291 5'GT 42383291 Upstream 48bp 35734 chr1 170695522 170695522 1 + G A BRCA 170695523 + 170695503 170695543 41 CCACCGATTATCTCTCCTGGGGGACAGCGTCTCCGTACAGG CCACCGATTATCTCTCCTGAGGGACAGCGTCTCCGTACAGG < 41bp 0.49881210620637 0.700214072708022 NA NA prediction 0.400428145416044 Functional Gain - PRRX1 ENSG00000116132 CDS Human protein_coding chr1:170695523 chr1:170695522 stopgain 1.000 1 20 hm7G_associated_SNPs_38807 0 0 1 0 1 PRRX1 chr1:170695542 5'GT 170695542 Upstream 21bp 35735 chr5 167929031 167929031 1 + G T LUAD 167929032 + 167929012 167929052 41 ATAAAATCTATGATGCATTGGACGTCTCTTTAATAGAGAGA ATAAAATCTATGATGCATTTGACGTCTCTTTAATAGAGAGA < 41bp 0.366608271919684 0.700210594511359 NA NA prediction 0.400421189022719 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167929032 chr5:167929031 nonsynonymous SNV 0.974 4 20 hm7G_associated_SNPs_38813 0 0 1 0 1 RARS chr5:167929110 5'GT 167929110 Upstream 80bp 35736 chr16 72141386 72141386 1 + G A CESC 72141387 + 72141367 72141407 41 ACTTCATGGACCCGCCCCCGGAGGACAACATGCTCAACTCT ACTTCATGGACCCGCCCCCAGAGGACAACATGCTCAACTCT < 41bp 0.507554270778568 0.70776467987907 NA NA prediction 0.400420818201005 Functional Gain - DHX38 ENSG00000140829 CDS Human protein_coding chr16:72141387 chr16:72141386 synonymous SNV . 0 20 hm7G_associated_SNPs_38814 0 0 1 0 1 DHX38 chr16:72141447 5'GT 72141447 Upstream 62bp 35737 chr6 155451501 155451501 1 + C T PRAD 155451502 + 155451482 155451522 41 CCTCAAAGCCAGGATGCGACGGATCAGTGACTGGACGGGAA CCTCAAAGCCAGGATGCGATGGATCAGTGACTGGACGGGAA < 41bp 0.550417664230892 0.750627380046946 NA NA prediction 0.400419431632108 Functional Gain - TIAM2 ENSG00000146426 CDS Human protein_coding chr6:155451502 chr6:155451501 nonsynonymous SNV 0.927 4 20 hm7G_associated_SNPs_38815 0 0 0 0 1 TIAM2 chr6:155451551 5'GT 155451551 Upstream 51bp 35738 chr6 158296187 158296187 1 + G A STAD 158296188 + 158296168 158296208 41 CAGCTCAGGCCAGTTCGTCGGCTGCCAGCAACAATCACCAG CAGCTCAGGCCAGTTCGTCAGCTGCCAGCAACAATCACCAG < 41bp 0.539693354432771 0.739903028992456 NA NA prediction 0.40041934911937 Functional Gain - SNX9 ENSG00000130340 CDS Human protein_coding chr6:158296188 chr6:158296187 synonymous SNV . 0 20 hm7G_associated_SNPs_38816 0 0 1 0 1 SNX9 chr6:158296208 5'GT 158296208 Upstream 22bp 35739 chr2 88387588 88387588 1 + C T COAD 88387589 + 88387569 88387609 41 AGTACATCTCGCACATCTTCGGAGTGGTAGGCCCCCTGCGT AGTACATCTCGCACATCTTTGGAGTGGTAGGCCCCCTGCGT < 41bp 0.527264281429446 0.727472763562033 NA NA prediction 0.400416964265175 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88387589 chr2:88387588 synonymous SNV . 0 20 hm7G_associated_SNPs_38818 0 0 0 0 1 SMYD1 chr2:88387594 5'GT 88387594 Upstream 7bp 35740 chrX 134709083 134709083 1 + C T UCEC 134709084 + 134709064 134709104 41 GACATTGGCTTCTCCACTGCGAGAGATTGATCCAGACCAAC GACATTGGCTTCTCCACTGTGAGAGATTGATCCAGACCAAC < 41bp 0.544763168182161 0.744971231391712 NA NA prediction 0.400416126419101 Functional Gain - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134709084 chrX:134709083 stopgain 0.918 1 20 hm7G_associated_SNPs_38819 0 0 0 0 2 INTS6L chrX:134709009 3'AG 134709009 Downstream 75bp 35741 chrX 134709083 134709083 1 + C T UCEC 134709084 + 134709064 134709104 41 GACATTGGCTTCTCCACTGCGAGAGATTGATCCAGACCAAC GACATTGGCTTCTCCACTGTGAGAGATTGATCCAGACCAAC < 41bp 0.544763168182161 0.744971231391712 NA NA prediction 0.400416126419101 Functional Gain - INTS6L ENSG00000165359 CDS Human protein_coding chrX:134709084 chrX:134709083 stopgain 0.918 1 20 hm7G_associated_SNPs_38819 0 0 0 0 2 INTS6L chrX:134709151 5'GT 134709151 Upstream 69bp 35742 chr4 25673285 25673285 1 + G A SKCM 25673286 + 25673266 25673306 41 CCCCTTCCCTCTGTTGGACGGATGGCATCCAAAACTGGACC CCCCTTCCCTCTGTTGGACAGATGGCATCCAAAACTGGACC < 41bp 0.502746713821771 0.702953724562084 NA NA prediction 0.400414021480625 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25673286 chr4:25673285 synonymous SNV . 0 20 hm7G_associated_SNPs_38820 0 0 0 0 2 SLC34A2 chr4:25673223 3'AG 25673223 Downstream 63bp 35743 chr4 25673285 25673285 1 + G A SKCM 25673286 + 25673266 25673306 41 CCCCTTCCCTCTGTTGGACGGATGGCATCCAAAACTGGACC CCCCTTCCCTCTGTTGGACAGATGGCATCCAAAACTGGACC < 41bp 0.502746713821771 0.702953724562084 NA NA prediction 0.400414021480625 Functional Gain - SLC34A2 ENSG00000157765 CDS Human protein_coding chr4:25673286 chr4:25673285 synonymous SNV . 0 20 hm7G_associated_SNPs_38820 0 0 0 0 2 SLC34A2 chr4:25673343 5'GT 25673343 Upstream 59bp 35744 chr1 205031052 205031052 1 + C T COAD 205031053 + 205031033 205031073 41 TGACATTGGCTCCAACCTGCGTTGGGGCTGTGCAGCCGCCG TGACATTGGCTCCAACCTGTGTTGGGGCTGTGCAGCCGCCG < 41bp 0.52681640682851 0.727022172385494 NA NA prediction 0.400411531113967 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031053 chr1:205031052 nonsynonymous SNV 0.745 0 20 hm7G_associated_SNPs_38821 0 0 0 0 2 CNTN2 chr1:205030993 3'AG 205030993 Downstream 60bp 35745 chr1 205031052 205031052 1 + C T COAD 205031053 + 205031033 205031073 41 TGACATTGGCTCCAACCTGCGTTGGGGCTGTGCAGCCGCCG TGACATTGGCTCCAACCTGTGTTGGGGCTGTGCAGCCGCCG < 41bp 0.52681640682851 0.727022172385494 NA NA prediction 0.400411531113967 Functional Gain - CNTN2 ENSG00000184144 CDS Human protein_coding chr1:205031053 chr1:205031052 nonsynonymous SNV 0.745 0 20 hm7G_associated_SNPs_38821 0 0 0 0 2 CNTN2 chr1:205031129 5'GT 205031129 Upstream 78bp 35746 chr10 118359629 118359629 1 + C T LGG 118359630 + 118359610 118359650 41 TGGAAAGCATCCTCAATCCCGATGGGTTTGCTGCATATCCC TGGAAAGCATCCTCAATCCTGATGGGTTTGCTGCATATCCC < 41bp 0.54858266197526 0.748786710604919 NA NA prediction 0.400408097259318 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118359630 chr10:118359629 synonymous SNV . 0 20 hm7G_associated_SNPs_38823 0 0 0 0 2 PNLIPRP1 chr10:118359559 3'AG 118359559 Downstream 71bp 35747 chr10 118359629 118359629 1 + C T LGG 118359630 + 118359610 118359650 41 TGGAAAGCATCCTCAATCCCGATGGGTTTGCTGCATATCCC TGGAAAGCATCCTCAATCCTGATGGGTTTGCTGCATATCCC < 41bp 0.54858266197526 0.748786710604919 NA NA prediction 0.400408097259318 Functional Gain - PNLIPRP1 ENSG00000187021 CDS Human protein_coding chr10:118359630 chr10:118359629 synonymous SNV . 0 20 hm7G_associated_SNPs_38823 0 0 0 0 2 PNLIPRP1 chr10:118359677 5'GT 118359677 Upstream 49bp 35748 chr1 12779563 12779563 1 + C T rs78912772 12779564 + 12779544 12779584 41 CTCCGCTAAAGTATGATCCCGATGTTGTGGTCACGGATTTC CTCCGCTAAAGTATGATCCTGATGTTGTGGTCACGGATTTC < 41bp 0.523821798156278 0.724025652124743 NA NA prediction 0.40040770793693 Functional Gain - AADACL3 ENSG00000188984 CDS Human protein_coding chr1:12779564 chr1:12779563 synonymous SNV . 0 20 hm7G_associated_SNPs_38824 0 0 0 0 1 AADACL3 chr1:12779477 3'AG 12779477 Downstream 87bp 35749 chr19 41515163 41515163 1 + G T LUSC 41515164 + 41515144 41515184 41 CTTCTTGAAATACTTTCCTGGGGCACACAGGCAAGTTTACA CTTCTTGAAATACTTTCCTTGGGCACACAGGCAAGTTTACA < 41bp 0.358536424913831 0.70020044720219 NA NA prediction 0.40040089440438 Functional Gain - CYP2B6 ENSG00000197408 CDS Human protein_coding chr19:41515164 chr19:41515163 nonsynonymous SNV 0.726 4 20 hm7G_associated_SNPs_38828 0 0 0 0 1 CYP2B6 chr19:41515124 3'AG 41515124 Downstream 40bp 35750 chr8 144295782 144295782 1 + G T rs11538388 144295783 + 144295763 144295803 41 AGGAAGATGAGGATGAGGTGGAAGAGGAGGAGACCAACAGG AGGAAGATGAGGATGAGGTTGAAGAGGAGGAGACCAACAGG < 41bp 0.71452398714424 0.914722844166544 NA NA prediction 0.400397714044607 Functional Gain - GPIHBP1 ENSG00000182851 CDS Human other chr8:144295783 chr8:144295782 synonymous SNV . 0 20 hm7G_associated_SNPs_38830 0 0 0 0 2 GPIHBP1 chr8:144295697 3'AG 144295697 Downstream 86bp 35751 chr8 144295782 144295782 1 + G T rs11538388 144295783 + 144295763 144295803 41 AGGAAGATGAGGATGAGGTGGAAGAGGAGGAGACCAACAGG AGGAAGATGAGGATGAGGTTGAAGAGGAGGAGACCAACAGG < 41bp 0.71452398714424 0.914722844166544 NA NA prediction 0.400397714044607 Functional Gain - GPIHBP1 ENSG00000182851 CDS Human other chr8:144295783 chr8:144295782 synonymous SNV . 0 20 hm7G_associated_SNPs_38830 0 0 0 0 2 GPIHBP1 chr8:144295825 5'GT 144295825 Upstream 44bp 35752 chr2 192261212 192261212 1 + C T PRAD 192261213 + 192261193 192261233 41 AGTAATTCAGTCTTATATCCGGGGTTGGAAGGTGAGTTTAA AGTAATTCAGTCTTATATCTGGGGTTGGAAGGTGAGTTTAA < 41bp 0.542813750344822 0.743011550994348 NA NA prediction 0.400395601299052 Functional Gain - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192261213 chr2:192261212 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38831 0 0 1 0 2 MYO1B chr2:192261155 3'AG 192261155 Downstream 58bp 35753 chr2 192261212 192261212 1 + C T PRAD 192261213 + 192261193 192261233 41 AGTAATTCAGTCTTATATCCGGGGTTGGAAGGTGAGTTTAA AGTAATTCAGTCTTATATCTGGGGTTGGAAGGTGAGTTTAA < 41bp 0.542813750344822 0.743011550994348 NA NA prediction 0.400395601299052 Functional Gain - MYO1B ENSG00000128641 CDS Human protein_coding chr2:192261213 chr2:192261212 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38831 0 0 1 0 2 MYO1B chr2:192261223 5'GT 192261223 Upstream 12bp 35754 chr1 21902347 21902347 1 + C T rs112335417 21902348 + 21902328 21902368 41 CCTCGGAAGACACTCTGACCGTGGTCACTGCGGACCATTCC CCTCGGAAGACACTCTGACTGTGGTCACTGCGGACCATTCC < 41bp 0.53271573251381 0.732912790070094 NA NA prediction 0.400394115112567 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21902348 chr1:21902347 synonymous SNV . 0 20 hm7G_associated_SNPs_38832 1 0 0 0 1 ALPL chr1:21902417 5'GT 21902417 Upstream 71bp 35755 chr5 177036618 177036618 1 + G T LUSC 177036619 + 177036599 177036639 41 CCCGCACTGCCCTGTCTGTGGGCGGGGCCCCCTGCACTGTC CCCGCACTGCCCTGTCTGTTGGCGGGGCCCCCTGCACTGTC < 41bp 0.365105007161818 0.70019633508993 NA NA prediction 0.400392670179859 Functional Gain - B4GALT7 ENSG00000027847 CDS Human protein_coding chr5:177036619 chr5:177036618 synonymous SNV . 0 20 hm7G_associated_SNPs_38833 0 0 0 0 1 B4GALT7 chr5:177036541 3'AG 177036541 Downstream 78bp 35756 chr17 51901264 51901264 1 - C T SKCM 51901263 - 51901243 51901283 41 CCATGCCCTTGCGGAAGATGGACTCCACCAGTGGCTGGGCG CCATGCCCTTGCGGAAGATAGACTCCACCAGTGGCTGGGCG < 41bp 0.490189418322367 0.700196028024555 NA NA prediction 0.400392056049109 Functional Gain - KIF2B ENSG00000141200 CDS Human protein_coding chr17:51901263 chr17:51901264 synonymous SNV . 0 20 hm7G_associated_SNPs_38834 0 0 0 0 1 KIF2B chr17:51901196 5'GT 51901196 Upstream 69bp 35757 chr9 2123753 2123753 1 + G A STAD 2123754 + 2123734 2123774 41 CGGCGGAGGGAAGATGCCCGGAACCCGAAACGGAAGCCCCG CGGCGGAGGGAAGATGCCCAGAACCCGAAACGGAAGCCCCG < 41bp 0.508894536157834 0.709090469871021 NA NA prediction 0.400391867426374 Functional Gain - SMARCA2 ENSG00000080503 CDS Human protein_coding chr9:2123754 chr9:2123753 nonsynonymous SNV 0.968 4 20 hm7G_associated_SNPs_38835 0 0 1 0 1 SMARCA2 chr9:2123719 3'AG 2123719 Downstream 35bp 35758 chr20 2575578 2575578 1 + C T UCEC 2575579 + 2575559 2575599 41 ACTTTATGGTGGGGGTCAGCGTGTTCGGCTACAGCCTGATT ACTTTATGGTGGGGGTCAGTGTGTTCGGCTACAGCCTGATT < 41bp 0.52672332222403 0.726918857355936 NA NA prediction 0.400391070263812 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2575579 chr20:2575578 synonymous SNV . 0 20 hm7G_associated_SNPs_38836 0 0 0 0 1 TMC2 chr20:2575613 5'GT 2575613 Upstream 36bp 35759 chr1 226026412 226026412 1 + C T rs373688139 226026413 + 226026393 226026433 41 CTGCCCGCAGGCCATACCCCGAAGCCCTTGCTGATGGTGCA CTGCCCGCAGGCCATACCCTGAAGCCCTTGCTGATGGTGCA < 41bp 0.566486235934605 0.766681430129909 NA NA prediction 0.400390388390609 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226026413 chr1:226026412 nonsynonymous SNV 0.112 0 20 hm7G_associated_SNPs_38838 0 0 1 0 1 EPHX1 chr1:226026355 3'AG 226026355 Downstream 58bp 35760 chr9 129265485 129265485 1 + C T UCEC 129265486 + 129265466 129265506 41 GCTTCCGCACAGAGCAGAGCGCAGCCGCCAGGCTCCCGCCC GCTTCCGCACAGAGCAGAGTGCAGCCGCCAGGCTCCCGCCC < 41bp 0.510840649123354 0.711034539697388 NA NA prediction 0.400387781148067 Functional Gain - MVB12B ENSG00000196814 CDS Human protein_coding chr9:129265486 chr9:129265485 synonymous SNV . 0 20 hm7G_associated_SNPs_38839 0 0 1 0 1 MVB12B chr9:129265456 3'AG 129265456 Downstream 30bp 35761 chr16 31424236 31424236 1 + G A UCEC 31424237 + 31424217 31424257 41 GGGGTCAGGACCTCACCCAGGATGGACTGATGGACCTGGCC GGGGTCAGGACCTCACCCAAGATGGACTGATGGACCTGGCC < 41bp 0.476959861805589 0.700193783697641 NA NA prediction 0.400387567395283 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424237 chr16:31424236 synonymous SNV . 0 20 hm7G_associated_SNPs_38840 0 0 0 0 2 ITGAD chr16:31424159 3'AG 31424159 Downstream 78bp 35762 chr16 31424236 31424236 1 + G A UCEC 31424237 + 31424217 31424257 41 GGGGTCAGGACCTCACCCAGGATGGACTGATGGACCTGGCC GGGGTCAGGACCTCACCCAAGATGGACTGATGGACCTGGCC < 41bp 0.476959861805589 0.700193783697641 NA NA prediction 0.400387567395283 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31424237 chr16:31424236 synonymous SNV . 0 20 hm7G_associated_SNPs_38840 0 0 0 0 2 ITGAD chr16:31424289 5'GT 31424289 Upstream 54bp 35763 chr6 42931281 42931281 1 + G A SKCM 42931282 + 42931262 42931302 41 CTCTGTTACAGTAAGTTCCGGCTCTCCTACTACCCACACTG CTCTGTTACAGTAAGTTCCAGCTCTCCTACTACCCACACTG < 41bp 0.569355827588429 0.769549377126078 NA NA prediction 0.400387099075298 Functional Gain - CNPY3-GNMT;GNMT ENSG00000124713 CDS Human protein_coding chr6:42931282 chr6:42931281 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38842 0 0 0 0 1 CNPY3-GNMT;GNMT chr6:42931273 3'AG 42931273 Downstream 9bp 35764 chr6 161523787 161523787 1 + C T UCEC 161523788 + 161523768 161523808 41 AAGAAGAAGTTGGGAACTTCGGACACTAATCAGCCAGAGTA AAGAAGAAGTTGGGAACTTTGGACACTAATCAGCCAGAGTA < 41bp 0.56416193813735 0.764355266558641 NA NA prediction 0.400386656842583 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161523788 chr6:161523787 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38843 0 0 1 0 2 MAP3K4 chr6:161523731 3'AG 161523731 Downstream 57bp 35765 chr6 161523787 161523787 1 + C T UCEC 161523788 + 161523768 161523808 41 AAGAAGAAGTTGGGAACTTCGGACACTAATCAGCCAGAGTA AAGAAGAAGTTGGGAACTTTGGACACTAATCAGCCAGAGTA < 41bp 0.56416193813735 0.764355266558641 NA NA prediction 0.400386656842583 Functional Gain - MAP3K4 ENSG00000085511 CDS Human protein_coding chr6:161523788 chr6:161523787 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38843 0 0 1 0 2 MAP3K4 chr6:161523811 5'GT 161523811 Upstream 25bp 35766 chr1 9784941 9784941 1 + C T UCEC 9784942 + 9784922 9784962 41 CCACCTCTTTGCCCTGATGCGGGCGGCAGGCCTGCCTGAGC CCACCTCTTTGCCCTGATGTGGGCGGCAGGCCTGCCTGAGC < 41bp 0.547199208017169 0.747389236821114 NA NA prediction 0.400380057607891 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9784942 chr1:9784941 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38844 0 0 1 0 2 PIK3CD chr1:9784862 3'AG 9784862 Downstream 80bp 35767 chr1 9784941 9784941 1 + C T UCEC 9784942 + 9784922 9784962 41 CCACCTCTTTGCCCTGATGCGGGCGGCAGGCCTGCCTGAGC CCACCTCTTTGCCCTGATGTGGGCGGCAGGCCTGCCTGAGC < 41bp 0.547199208017169 0.747389236821114 NA NA prediction 0.400380057607891 Functional Gain - PIK3CD ENSG00000171608 CDS Human protein_coding chr1:9784942 chr1:9784941 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38844 0 0 1 0 2 PIK3CD chr1:9784994 5'GT 9784994 Upstream 54bp 35768 chrX 135092657 135092657 1 + C T OV 135092658 + 135092638 135092678 41 CACACCTTTGATGTCACAGCGATGTTCAAGTCTATTGGGAT CACACCTTTGATGTCACAGTGATGTTCAAGTCTATTGGGAT < 41bp 0.486840026886294 0.700189750979007 NA NA prediction 0.400379501958014 Functional Gain - SLC9A6 ENSG00000198689 CDS Human protein_coding chrX:135092658 chrX:135092657 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_38845 0 0 0 0 1 SLC9A6 chrX:135092601 3'AG 135092601 Downstream 57bp 35769 chr7 11101430 11101430 1 + C T COAD 11101431 + 11101411 11101451 41 TTTCCAGAGAACCAGAGGACGAAAACGAAGCTTCGTTCCTG TTTCCAGAGAACCAGAGGATGAAAACGAAGCTTCGTTCCTG < 41bp 0.506926148113035 0.707115793066064 NA NA prediction 0.400379289906058 Functional Gain - PHF14 ENSG00000106443 CDS Human protein_coding chr7:11101431 chr7:11101430 stopgain 1.000 1 20 hm7G_associated_SNPs_38846 0 0 1 0 2 PHF14 chr7:11101418 3'AG 11101418 Downstream 13bp 35770 chr7 11101430 11101430 1 + C T COAD 11101431 + 11101411 11101451 41 TTTCCAGAGAACCAGAGGACGAAAACGAAGCTTCGTTCCTG TTTCCAGAGAACCAGAGGATGAAAACGAAGCTTCGTTCCTG < 41bp 0.506926148113035 0.707115793066064 NA NA prediction 0.400379289906058 Functional Gain - PHF14 ENSG00000106443 CDS Human protein_coding chr7:11101431 chr7:11101430 stopgain 1.000 1 20 hm7G_associated_SNPs_38846 0 0 1 0 2 PHF14 chr7:11101468 5'GT 11101468 Upstream 39bp 35771 chr12 20523121 20523121 1 + C T STAD 20523122 + 20523102 20523142 41 TCGTGTCCGCCGAGATGTCCGGCTGCAGCAGCAAGTCCCAT TCGTGTCCGCCGAGATGTCTGGCTGCAGCAGCAAGTCCCAT < 41bp 0.540307228627157 0.740495450001076 NA NA prediction 0.400376442747838 Functional Gain - PDE3A ENSG00000172572 CDS Human protein_coding chr12:20523122 chr12:20523121 synonymous SNV . 0 20 hm7G_associated_SNPs_38847 0 0 0 0 1 PDE3A chr12:20523178 5'GT 20523178 Upstream 58bp 35772 chr22 51133417 51133417 1 + C T rs116756129 51133418 + 51133398 51133438 41 AAGATCGTGACCGGGATGCCGACCAGGAGAGCAACATCAGT AAGATCGTGACCGGGATGCTGACCAGGAGAGCAACATCAGT < 41bp 0.542721724399131 0.74290927503655 NA NA prediction 0.400375101274838 Functional Gain - SHANK3 ENSG00000251322 CDS Human protein_coding chr22:51133418 chr22:51133417 synonymous SNV . 0 20 hm7G_associated_SNPs_38848 0 0 0 0 1 SHANK3 chr22:51133476 5'GT 51133476 Upstream 60bp 35773 chr19 5131091 5131091 1 + C T rs115799672 5131092 + 5131072 5131112 41 CTCCTCTTCCCACAGAGGACGGGAGGGGCAAGCTGCGGCCA CTCCTCTTCCCACAGAGGATGGGAGGGGCAAGCTGCGGCCA < 41bp 0.505047820842247 0.705235237165261 NA NA prediction 0.400374832646027 Functional Gain - KDM4B ENSG00000127663 CDS Human protein_coding chr19:5131092 chr19:5131091 synonymous SNV . 0 20 hm7G_associated_SNPs_38849 0 0 1 0 1 KDM4B chr19:5131087 3'AG 5131087 Downstream 5bp 35774 chr10 89124905 89124905 1 + C T rs28605659 89124906 + 89124886 89124926 41 GACTGGACGCCCCCAGACCCGGGCCTCCTGAGCTACACTGA GACTGGACGCCCCCAGACCTGGGCCTCCTGAGCTACACTGA < 41bp 0.508778797004754 0.708962992650465 NA NA prediction 0.400368391291423 Functional Gain - NUTM2D ENSG00000214562 CDS Human protein_coding chr10:89124906 chr10:89124905 nonsynonymous SNV 0.656 2 20 hm7G_associated_SNPs_38851 0 0 0 0 1 NUTM2D chr10:89124960 5'GT 89124960 Upstream 56bp 35775 chr11 74705631 74705631 1 + C T UCEC 74705632 + 74705612 74705652 41 TGACAGAGGGATTACCTACCGGATCCCAGCCCTGCTCTACA TGACAGAGGGATTACCTACTGGATCCCAGCCCTGCTCTACA < 41bp 0.560465103660004 0.760649084096049 NA NA prediction 0.400367960872088 Functional Gain - NEU3 ENSG00000162139 CDS Human protein_coding chr11:74705632 chr11:74705631 nonsynonymous SNV 0.994 5 20 hm7G_associated_SNPs_38852 0 0 1 0 1 NEU3 chr11:74705554 3'AG 74705554 Downstream 78bp 35776 chr19 50804968 50804968 1 + G A LUAD 50804969 + 50804949 50804989 41 AGCGCAGTTTCTCAGCCAAGGCAGAGAGCGGGCGGCAGCAG AGCGCAGTTTCTCAGCCAAAGCAGAGAGCGGGCGGCAGCAG < 41bp 0.553104695171665 0.753287459654014 NA NA prediction 0.400365528964699 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50804969 chr19:50804968 synonymous SNV . 0 20 hm7G_associated_SNPs_38853 0 0 1 0 1 MYH14 chr19:50804918 3'AG 50804918 Downstream 51bp 35777 chr19 56382325 56382325 1 + G T UCEC 56382326 + 56382306 56382346 41 GACTGAAAACTCTCTGCGAGGCCTTGAAACATCCGGACTGC GACTGAAAACTCTCTGCGATGCCTTGAAACATCCGGACTGC < 41bp 0.361114263062552 0.700182296442717 NA NA prediction 0.400364592885434 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56382326 chr19:56382325 nonsynonymous SNV 0.004 0 20 hm7G_associated_SNPs_38854 0 0 0 0 1 NLRP4 chr19:56382363 5'GT 56382363 Upstream 39bp 35778 chr17 79770102 79770102 1 + C T SARC 79770103 + 79770083 79770123 41 GGGCTTCTGGTGGATCCTGCGGTTCCCCGTCTTCCTGGCCA GGGCTTCTGGTGGATCCTGTGGTTCCCCGTCTTCCTGGCCA < 41bp 0.562025841442558 0.762207911446661 NA NA prediction 0.400364140008207 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79770103 chr17:79770102 nonsynonymous SNV 0.044 3 20 hm7G_associated_SNPs_38855 0 0 0 0 2 GCGR chr17:79770059 3'AG 79770059 Downstream 44bp 35779 chr17 79770102 79770102 1 + C T SARC 79770103 + 79770083 79770123 41 GGGCTTCTGGTGGATCCTGCGGTTCCCCGTCTTCCTGGCCA GGGCTTCTGGTGGATCCTGTGGTTCCCCGTCTTCCTGGCCA < 41bp 0.562025841442558 0.762207911446661 NA NA prediction 0.400364140008207 Functional Gain - GCGR ENSG00000215644 CDS Human protein_coding chr17:79770103 chr17:79770102 nonsynonymous SNV 0.044 3 20 hm7G_associated_SNPs_38855 0 0 0 0 2 GCGR chr17:79770128 5'GT 79770128 Upstream 27bp 35780 chr16 81737583 81737583 1 + G A CESC 81737584 + 81737564 81737604 41 GCTGAGCTCCGGCTCCTTCGGAAACCTGGAGAACCTCAGTT GCTGAGCTCCGGCTCCTTCAGAAACCTGGAGAACCTCAGTT < 41bp 0.508568351594699 0.708750275559882 NA NA prediction 0.400363847930365 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81737584 chr16:81737583 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38856 0 0 1 0 1 CMIP chr16:81737544 3'AG 81737544 Downstream 40bp 35781 chr15 91423399 91423399 1 + G A BRCA 91423400 + 91423380 91423420 41 CCAACCACATCACTCGGCTGGAGCACGCTCAGGCGCGGCTC CCAACCACATCACTCGGCTAGAGCACGCTCAGGCGCGGCTC < 41bp 0.579047017672467 0.779228596772547 NA NA prediction 0.40036315820016 Functional Gain - FURIN ENSG00000140564 CDS Human protein_coding chr15:91423400 chr15:91423399 synonymous SNV . 0 20 hm7G_associated_SNPs_38858 0 0 1 0 1 FURIN chr15:91423324 3'AG 91423324 Downstream 76bp 35782 chr17 38345468 38345468 1 + C T COAD 38345469 + 38345449 38345489 41 TTTCCGTCCAGTCTTCTGCCGTGTATACATGCCTGACCACT TTTCCGTCCAGTCTTCTGCTGTGTATACATGCCTGACCACT < 41bp 0.533515608678742 0.733696147627848 NA NA prediction 0.400361077898211 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38345469 chr17:38345468 nonsynonymous SNV 0.996 3 20 hm7G_associated_SNPs_38860 0 0 0 0 1 RAPGEFL1 chr17:38345460 3'AG 38345460 Downstream 9bp 35783 chr12 130846069 130846069 1 + C T LGG 130846070 + 130846050 130846090 41 TCGTGATGATCGTTGGCATCGATTGTTACCATGACATGACA TCGTGATGATCGTTGGCATTGATTGTTACCATGACATGACA < 41bp 0.554829828153276 0.75500911597863 NA NA prediction 0.400358575650708 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130846070 chr12:130846069 synonymous SNV . 0 20 hm7G_associated_SNPs_38862 0 0 0 0 2 PIWIL1 chr12:130846043 3'AG 130846043 Downstream 27bp 35784 chr12 130846069 130846069 1 + C T LGG 130846070 + 130846050 130846090 41 TCGTGATGATCGTTGGCATCGATTGTTACCATGACATGACA TCGTGATGATCGTTGGCATTGATTGTTACCATGACATGACA < 41bp 0.554829828153276 0.75500911597863 NA NA prediction 0.400358575650708 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130846070 chr12:130846069 synonymous SNV . 0 20 hm7G_associated_SNPs_38862 0 0 0 0 2 PIWIL1 chr12:130846146 5'GT 130846146 Upstream 78bp 35785 chr1 13933720 13933720 1 + C T STAD 13933721 + 13933701 13933741 41 CTACAGGTTTGGAAGGCGGCGTTGCCATGCCAGGTGCCGAA CTACAGGTTTGGAAGGCGGTGTTGCCATGCCAGGTGCCGAA < 41bp 0.53151704810261 0.731695492204621 NA NA prediction 0.400356888204021 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933721 chr1:13933720 synonymous SNV . 0 20 hm7G_associated_SNPs_38863 0 0 1 0 2 PDPN chr1:13933668 3'AG 13933668 Downstream 53bp 35786 chr1 13933720 13933720 1 + C T STAD 13933721 + 13933701 13933741 41 CTACAGGTTTGGAAGGCGGCGTTGCCATGCCAGGTGCCGAA CTACAGGTTTGGAAGGCGGTGTTGCCATGCCAGGTGCCGAA < 41bp 0.53151704810261 0.731695492204621 NA NA prediction 0.400356888204021 Functional Gain - PDPN ENSG00000162493 CDS Human protein_coding chr1:13933721 chr1:13933720 synonymous SNV . 0 20 hm7G_associated_SNPs_38863 0 0 1 0 2 PDPN chr1:13933801 5'GT 13933801 Upstream 82bp 35787 chr10 101610442 101610442 1 + C T UCEC 101610443 + 101610423 101610463 41 CTGGATGAGGCCACTGCTGCGGTGGATCTAGAGACAGACAA CTGGATGAGGCCACTGCTGTGGTGGATCTAGAGACAGACAA < 41bp 0.571857686060458 0.772034844208161 NA NA prediction 0.400354316295406 Functional Gain - ABCC2 ENSG00000023839 CDS Human protein_coding chr10:101610443 chr10:101610442 nonsynonymous SNV 0.875 5 20 hm7G_associated_SNPs_38864 0 0 1 0 1 ABCC2 chr10:101610359 3'AG 101610359 Downstream 84bp 35788 chr16 11118704 11118704 1 + C T PRAD 11118705 + 11118685 11118725 41 CTGGATATGGTGTACCACGCGCTGGACAGCCCGGATGATGA CTGGATATGGTGTACCACGTGCTGGACAGCCCGGATGATGA < 41bp 0.572985439188843 0.773162248819415 NA NA prediction 0.400353619261142 Functional Gain - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11118705 chr16:11118704 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_38865 0 0 1 0 2 CLEC16A chr16:11118678 3'AG 11118678 Downstream 27bp 35789 chr16 11118704 11118704 1 + C T PRAD 11118705 + 11118685 11118725 41 CTGGATATGGTGTACCACGCGCTGGACAGCCCGGATGATGA CTGGATATGGTGTACCACGTGCTGGACAGCCCGGATGATGA < 41bp 0.572985439188843 0.773162248819415 NA NA prediction 0.400353619261142 Functional Gain - CLEC16A ENSG00000038532 CDS Human protein_coding chr16:11118705 chr16:11118704 nonsynonymous SNV 0.956 3 20 hm7G_associated_SNPs_38865 0 0 1 0 2 CLEC16A chr16:11118778 5'GT 11118778 Upstream 75bp 35790 chr22 31484688 31484688 1 + C T UCEC 31484689 + 31484669 31484709 41 TGTCTCTTACCCACAGTTGCGAAGCGCTGGTGAGTATGAGG TGTCTCTTACCCACAGTTGTGAAGCGCTGGTGAGTATGAGG < 41bp 0.529204018861182 0.729380666433576 NA NA prediction 0.400353295144788 Functional Gain - SMTN ENSG00000183963 CDS Human protein_coding chr22:31484689 chr22:31484688 stopgain 0.873 0 20 hm7G_associated_SNPs_38866 0 0 1 0 1 SMTN chr22:31484685 3'AG 31484685 Downstream 4bp 35791 chrX 152807164 152807164 1 + C T UCEC 152807165 + 152807145 152807185 41 GAGGCGCAGAAGATGAGGGCGAGGCCGAAGCTGGCTGGATC GAGGCGCAGAAGATGAGGGTGAGGCCGAAGCTGGCTGGATC < 41bp 0.567341717547024 0.767517806499647 NA NA prediction 0.400352177905245 Functional Gain - ATP2B3 ENSG00000067842 CDS Human protein_coding chrX:152807165 chrX:152807164 synonymous SNV . 0 20 hm7G_associated_SNPs_38867 0 0 0 0 1 ATP2B3 chrX:152807127 3'AG 152807127 Downstream 38bp 35792 chr6 55113470 55113470 1 + G T LUAD 55113471 + 55113451 55113491 41 TGGAAGAACCACCACATGAGGACGGTAACCAACTACTTCAT TGGAAGAACCACCACATGATGACGGTAACCAACTACTTCAT < 41bp 0.374605937131067 0.700175712837882 NA NA prediction 0.400351425675764 Functional Gain - HCRTR2 ENSG00000137252 CDS Human protein_coding chr6:55113471 chr6:55113470 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38868 0 0 0 1 1 HCRTR2 chr6:55113437 3'AG 55113437 Downstream 34bp 35793 chr20 56928527 56928527 1 + C T UCEC 56928528 + 56928508 56928548 41 GAATTGGGTGAAAGAGCTTCGACAGCATGGCCCACCTAATA GAATTGGGTGAAAGAGCTTTGACAGCATGGCCCACCTAATA < 41bp 0.533609275669824 0.733784514602634 NA NA prediction 0.400350477865619 Functional Gain - RAB22A ENSG00000124209 CDS Human protein_coding chr20:56928528 chr20:56928527 stopgain 0.997 1 20 hm7G_associated_SNPs_38869 0 0 1 0 2 RAB22A chr20:56928488 3'AG 56928488 Downstream 40bp 35794 chr20 56928527 56928527 1 + C T UCEC 56928528 + 56928508 56928548 41 GAATTGGGTGAAAGAGCTTCGACAGCATGGCCCACCTAATA GAATTGGGTGAAAGAGCTTTGACAGCATGGCCCACCTAATA < 41bp 0.533609275669824 0.733784514602634 NA NA prediction 0.400350477865619 Functional Gain - RAB22A ENSG00000124209 CDS Human protein_coding chr20:56928528 chr20:56928527 stopgain 0.997 1 20 hm7G_associated_SNPs_38869 0 0 1 0 2 RAB22A chr20:56928594 5'GT 56928594 Upstream 68bp 35795 chr17 79205769 79205769 1 - G A COAD 79205768 - 79205748 79205788 41 GCTGGGATGAGCTGGACAGCGGCCCCAGCTCTCAGAATTCC GCTGGGATGAGCTGGACAGTGGCCCCAGCTCTCAGAATTCC < 41bp 0.485232605441445 0.700175145027433 NA NA prediction 0.400350290054866 Functional Gain - TEPSIN ENSG00000167302 CDS Human protein_coding chr17:79205768 chr17:79205769 synonymous SNV . 0 20 hm7G_associated_SNPs_38870 0 0 0 0 1 TEPSIN chr17:79205821 3'AG 79205821 Downstream 53bp 35796 chr10 50854705 50854705 1 + C T UCEC 50854706 + 50854686 50854726 41 ACGGGGCCAATCGCTGGTACGACAAGTCCCTGCAGGTAAGC ACGGGGCCAATCGCTGGTATGACAAGTCCCTGCAGGTAAGC < 41bp 0.538500901300283 0.738675886445436 NA NA prediction 0.400349970290306 Functional Gain - CHAT ENSG00000070748 CDS Human protein_coding chr10:50854706 chr10:50854705 synonymous SNV . 0 20 hm7G_associated_SNPs_38873 0 0 0 0 1 CHAT chr10:50854720 5'GT 50854720 Upstream 16bp 35797 chr7 813765 813765 1 + C T KIRP 813766 + 813746 813786 41 CATGCGGGGAGGACAGCCGCGGCCATCCGCACGGCTGCCGT CATGCGGGGAGGACAGCCGTGGCCATCCGCACGGCTGCCGT < 41bp 0.559159835751502 0.759333222086154 NA NA prediction 0.400346772669304 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:813766 chr7:813765 nonsynonymous SNV 0.847 3 20 hm7G_associated_SNPs_38875 0 0 1 0 2 DNAAF5 chr7:813685 3'AG 813685 Downstream 81bp 35798 chr7 813765 813765 1 + C T KIRP 813766 + 813746 813786 41 CATGCGGGGAGGACAGCCGCGGCCATCCGCACGGCTGCCGT CATGCGGGGAGGACAGCCGTGGCCATCCGCACGGCTGCCGT < 41bp 0.559159835751502 0.759333222086154 NA NA prediction 0.400346772669304 Functional Gain - DNAAF5 ENSG00000164818 CDS Human protein_coding chr7:813766 chr7:813765 nonsynonymous SNV 0.847 3 20 hm7G_associated_SNPs_38875 0 0 1 0 2 DNAAF5 chr7:813835 5'GT 813835 Upstream 71bp 35799 chr19 19603235 19603235 1 + C T ESCA 19603236 + 19603216 19603256 41 CCTTGAAGGAGACTAGCACCGAGGCCCTCATGGTGAGCCAC CCTTGAAGGAGACTAGCACTGAGGCCCTCATGGTGAGCCAC < 41bp 0.491348880639072 0.70017220941225 NA NA prediction 0.400344418824501 Functional Gain - GATAD2A ENSG00000167491 CDS Human protein_coding chr19:19603236 chr19:19603235 synonymous SNV . 0 20 hm7G_associated_SNPs_38876 0 0 1 0 1 GATAD2A chr19:19603247 5'GT 19603247 Upstream 13bp 35800 chr16 88105722 88105722 1 + G A STAD 88105723 + 88105703 88105743 41 TGGCCTCCTCGGACCCCGCGGCGGCGGGCGTGGATGGGTCG TGGCCTCCTCGGACCCCGCAGCGGCGGGCGTGGATGGGTCG < 41bp 0.581207958710015 0.781378810897884 NA NA prediction 0.400341704375737 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88105723 chr16:88105722 synonymous SNV . 0 20 hm7G_associated_SNPs_38877 0 0 1 0 2 BANP chr16:88105675 3'AG 88105675 Downstream 48bp 35801 chr16 88105722 88105722 1 + G A STAD 88105723 + 88105703 88105743 41 TGGCCTCCTCGGACCCCGCGGCGGCGGGCGTGGATGGGTCG TGGCCTCCTCGGACCCCGCAGCGGCGGGCGTGGATGGGTCG < 41bp 0.581207958710015 0.781378810897884 NA NA prediction 0.400341704375737 Functional Gain - BANP ENSG00000172530 CDS Human protein_coding chr16:88105723 chr16:88105722 synonymous SNV . 0 20 hm7G_associated_SNPs_38877 0 0 1 0 2 BANP chr16:88105818 5'GT 88105818 Upstream 97bp 35802 chr5 176002542 176002542 1 + C T rs41275281 176002543 + 176002523 176002563 41 CGGTGGAGGCTGTGGATGGCGACAAAGGCATCAATGACCCT CGGTGGAGGCTGTGGATGGTGACAAAGGCATCAATGACCCT < 41bp 0.484988285434468 0.700170516144787 NA NA prediction 0.400341032289574 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176002543 chr5:176002542 synonymous SNV . 0 20 hm7G_associated_SNPs_38878 0 0 1 0 2 CDHR2 chr5:176002507 3'AG 176002507 Downstream 36bp 35803 chr5 176002542 176002542 1 + C T rs41275281 176002543 + 176002523 176002563 41 CGGTGGAGGCTGTGGATGGCGACAAAGGCATCAATGACCCT CGGTGGAGGCTGTGGATGGTGACAAAGGCATCAATGACCCT < 41bp 0.484988285434468 0.700170516144787 NA NA prediction 0.400341032289574 Functional Gain - CDHR2 ENSG00000074276 CDS Human protein_coding chr5:176002543 chr5:176002542 synonymous SNV . 0 20 hm7G_associated_SNPs_38878 0 0 1 0 2 CDHR2 chr5:176002582 5'GT 176002582 Upstream 41bp 35804 chr11 70200516 70200516 1 + C T rs139448605 70200517 + 70200497 70200537 41 GACCGGCTGCACAAAGGGGCGCTGCACACCGTCAGCCACGA GACCGGCTGCACAAAGGGGTGCTGCACACCGTCAGCCACGA < 41bp 0.537688206965523 0.737856113374383 NA NA prediction 0.40033581281772 Functional Gain - PPFIA1 ENSG00000131626 CDS Human protein_coding chr11:70200517 chr11:70200516 nonsynonymous SNV 0.097 0 20 hm7G_associated_SNPs_38882 0 0 1 0 1 PPFIA1 chr11:70200558 5'GT 70200558 Upstream 43bp 35805 chr2 150325271 150325271 1 + C T GBM 150325272 + 150325252 150325292 41 CCACTGGCTGCAGAGACTCCGAGCATGAAGGCCACAAGGTC CCACTGGCTGCAGAGACTCTGAGCATGAAGGCCACAAGGTC < 41bp 0.547080318512207 0.747246734563603 NA NA prediction 0.400332832102792 Functional Gain - LYPD6 ENSG00000187123 CDS Human protein_coding chr2:150325272 chr2:150325271 synonymous SNV . 0 20 hm7G_associated_SNPs_38885 0 0 0 0 1 LYPD6 chr2:150325289 5'GT 150325289 Upstream 19bp 35806 chr19 51294974 51294974 1 + G A UCEC 51294975 + 51294955 51294995 41 GCCCAGGCCAACCTTGCCGGGCTGTTTCCCGAGGCTGCTCC GCCCAGGCCAACCTTGCCGAGCTGTTTCCCGAGGCTGCTCC < 41bp 0.466946572589287 0.700165929119642 NA NA prediction 0.400331858239284 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51294975 chr19:51294974 nonsynonymous SNV 0.119 4 20 hm7G_associated_SNPs_38886 0 0 0 0 2 ACPT chr19:51294913 3'AG 51294913 Downstream 62bp 35807 chr19 51294974 51294974 1 + G A UCEC 51294975 + 51294955 51294995 41 GCCCAGGCCAACCTTGCCGGGCTGTTTCCCGAGGCTGCTCC GCCCAGGCCAACCTTGCCGAGCTGTTTCCCGAGGCTGCTCC < 41bp 0.466946572589287 0.700165929119642 NA NA prediction 0.400331858239284 Functional Gain - ACPT ENSG00000142513 CDS Human protein_coding chr19:51294975 chr19:51294974 nonsynonymous SNV 0.119 4 20 hm7G_associated_SNPs_38886 0 0 0 0 2 ACPT chr19:51295059 5'GT 51295059 Upstream 86bp 35808 chr10 96701990 96701990 1 + C T PRAD 96701991 + 96701971 96702011 41 GAAATGGAAGGAGATCCGGCGTTTCTCCCTCATGACGCTGC GAAATGGAAGGAGATCCGGTGTTTCTCCCTCATGACGCTGC < 41bp 0.525377212725042 0.725543028772949 NA NA prediction 0.400331632095815 Functional Gain - CYP2C9 ENSG00000138109 CDS Human protein_coding chr10:96701991 chr10:96701990 nonsynonymous SNV 0.017 3 20 hm7G_associated_SNPs_38887 0 0 0 0 1 CYP2C9 chr10:96701949 3'AG 96701949 Downstream 42bp 35809 chr19 50812280 50812280 1 + C T UCEC 50812281 + 50812261 50812301 41 GCTGGAGAAGGGAAACCTTCGAGTCAAGCAGCTGAAGCGGC GCTGGAGAAGGGAAACCTTTGAGTCAAGCAGCTGAAGCGGC < 41bp 0.544369392304237 0.744534646221127 NA NA prediction 0.400330507833779 Functional Gain - MYH14 ENSG00000105357 CDS Human protein_coding chr19:50812281 chr19:50812280 stopgain 0.472 0 20 hm7G_associated_SNPs_38888 0 0 0 0 1 MYH14 chr19:50812262 3'AG 50812262 Downstream 19bp 35810 chr11 67069116 67069116 1 + G A rs146192337 67069117 + 67069097 67069137 41 TTGAAGCGGGCACTGAGGCGGAGCAGGTGGGACTTGCCCAG TTGAAGCGGGCACTGAGGCAGAGCAGGTGGGACTTGCCCAG < 41bp 0.532197432784561 0.732361185483845 NA NA prediction 0.400327505398568 Functional Gain - ANKRD13D ENSG00000172932 CDS Human protein_coding chr11:67069117 chr11:67069116 synonymous SNV . 0 20 hm7G_associated_SNPs_38889 0 0 1 0 1 ANKRD13D chr11:67069122 5'GT 67069122 Upstream 7bp 35811 chr19 16962339 16962339 1 + C T SKCM 16962340 + 16962320 16962360 41 TCCGCCCCGTGTCTGCACCCGCCAAGGTACCTGTGAGCCAC TCCGCCCCGTGTCTGCACCTGCCAAGGTACCTGTGAGCCAC < 41bp 0.543339150885915 0.743500096436707 NA NA prediction 0.400321891101583 Functional Gain - SIN3B ENSG00000127511 CDS Human protein_coding chr19:16962340 chr19:16962339 synonymous SNV . 0 20 hm7G_associated_SNPs_38892 0 0 1 0 1 SIN3B chr19:16962345 5'GT 16962345 Upstream 7bp 35812 chr16 50339494 50339494 1 + C T LUSC 50339495 + 50339475 50339515 41 ATTGAGGGGCTCAGCTCCACGAGGTGAGGTCTGAGACCTCT ATTGAGGGGCTCAGCTCCATGAGGTGAGGTCTGAGACCTCT < 41bp 0.492042930894153 0.700160775058057 NA NA prediction 0.400321550116113 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50339495 chr16:50339494 nonsynonymous SNV 0.700 1 20 hm7G_associated_SNPs_38893 0 0 1 0 2 ADCY7 chr16:50339414 3'AG 50339414 Downstream 81bp 35813 chr16 50339494 50339494 1 + C T LUSC 50339495 + 50339475 50339515 41 ATTGAGGGGCTCAGCTCCACGAGGTGAGGTCTGAGACCTCT ATTGAGGGGCTCAGCTCCATGAGGTGAGGTCTGAGACCTCT < 41bp 0.492042930894153 0.700160775058057 NA NA prediction 0.400321550116113 Functional Gain - ADCY7 ENSG00000121281 CDS Human protein_coding chr16:50339495 chr16:50339494 nonsynonymous SNV 0.700 1 20 hm7G_associated_SNPs_38893 0 0 1 0 2 ADCY7 chr16:50339497 5'GT 50339497 Upstream 4bp 35814 chr22 21330015 21330015 1 + G A LGG 21330016 + 21329996 21330036 41 CCTGAGCAGCTGGCCCTGAGGCCCAAGGAGTTTTTCCGAGC CCTGAGCAGCTGGCCCTGAAGCCCAAGGAGTTTTTCCGAGC < 41bp 0.598734584046258 0.798895316110689 NA NA prediction 0.400321464128862 Functional Gain - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21330016 chr22:21330015 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38894 0 0 0 0 2 AIFM3 chr22:21329981 3'AG 21329981 Downstream 35bp 35815 chr22 21330015 21330015 1 + G A LGG 21330016 + 21329996 21330036 41 CCTGAGCAGCTGGCCCTGAGGCCCAAGGAGTTTTTCCGAGC CCTGAGCAGCTGGCCCTGAAGCCCAAGGAGTTTTTCCGAGC < 41bp 0.598734584046258 0.798895316110689 NA NA prediction 0.400321464128862 Functional Gain - AIFM3 ENSG00000183773 CDS Human protein_coding chr22:21330016 chr22:21330015 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38894 0 0 0 0 2 AIFM3 chr22:21330067 5'GT 21330067 Upstream 53bp 35816 chr8 37963240 37963240 1 + G A LUAD 37963241 + 37963221 37963261 41 GACAGTTGAGCCCAGTTCCGGGGAGGCTGAAGGCGGGTAAG GACAGTTGAGCCCAGTTCCAGGGAGGCTGAAGGCGGGTAAG < 41bp 0.567694755560347 0.767854051155278 NA NA prediction 0.400318591189862 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37963241 chr8:37963240 nonsynonymous SNV 0.039 3 20 hm7G_associated_SNPs_38895 0 0 1 0 1 ASH2L chr8:37963256 5'GT 37963256 Upstream 17bp 35817 chr15 74622635 74622635 1 + C T UCEC 74622636 + 74622616 74622656 41 GAACCGCATACTGAGGAGCCGCCTGGCCCAGCAGGAGGAGG GAACCGCATACTGAGGAGCTGCCTGGCCCAGCAGGAGGAGG < 41bp 0.556563144140682 0.756721953867559 NA NA prediction 0.400317619453753 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74622636 chr15:74622635 nonsynonymous SNV 0.035 1 20 hm7G_associated_SNPs_38896 0 0 0 0 1 CCDC33 chr15:74622695 5'GT 74622695 Upstream 61bp 35818 chrX 106061952 106061952 1 + C T UCEC 106061953 + 106061933 106061973 41 TGCTAAAGTAGCTCCATTTCGCATCCTACACCAGACACCAG TGCTAAAGTAGCTCCATTTTGCATCCTACACCAGACACCAG < 41bp 0.547204264051096 0.747362146712659 NA NA prediction 0.400315765323126 Functional Gain - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106061953 chrX:106061952 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38897 0 0 0 0 2 TBC1D8B chrX:106061893 3'AG 106061893 Downstream 60bp 35819 chrX 106061952 106061952 1 + C T UCEC 106061953 + 106061933 106061973 41 TGCTAAAGTAGCTCCATTTCGCATCCTACACCAGACACCAG TGCTAAAGTAGCTCCATTTTGCATCCTACACCAGACACCAG < 41bp 0.547204264051096 0.747362146712659 NA NA prediction 0.400315765323126 Functional Gain - TBC1D8B ENSG00000133138 CDS Human protein_coding chrX:106061953 chrX:106061952 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38897 0 0 0 0 2 TBC1D8B chrX:106062003 5'GT 106062003 Upstream 52bp 35820 chr1 166961994 166961994 1 + C T UCEC 166961995 + 166961975 166962015 41 ACCTCCTCATTGTGAACAGCGCTTCCTCCCTTGTGAAATTG ACCTCCTCATTGTGAACAGTGCTTCCTCCCTTGTGAAATTG < 41bp 0.535459456956169 0.735615550766919 NA NA prediction 0.400312187621499 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961995 chr1:166961994 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_38899 0 0 0 0 2 MAEL chr1:166961923 3'AG 166961923 Downstream 72bp 35821 chr1 166961994 166961994 1 + C T UCEC 166961995 + 166961975 166962015 41 ACCTCCTCATTGTGAACAGCGCTTCCTCCCTTGTGAAATTG ACCTCCTCATTGTGAACAGTGCTTCCTCCCTTGTGAAATTG < 41bp 0.535459456956169 0.735615550766919 NA NA prediction 0.400312187621499 Functional Gain - MAEL ENSG00000143194 CDS Human protein_coding chr1:166961995 chr1:166961994 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_38899 0 0 0 0 2 MAEL chr1:166962078 5'GT 166962078 Upstream 85bp 35822 chr2 241812439 241812439 1 + G A LUAD 241812440 + 241812420 241812460 41 TTCGGTGGCATCCCTGGGCGGGACCCCCCTTTACATGGACC TTCGGTGGCATCCCTGGGCAGGACCCCCCTTTACATGGACC < 41bp 0.464260663759354 0.700154795429256 NA NA prediction 0.400309590858512 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241812440 chr2:241812439 nonsynonymous SNV 0.068 5 20 hm7G_associated_SNPs_38901 1 0 1 0 2 AGXT chr2:241812396 3'AG 241812396 Downstream 44bp 35823 chr2 241812439 241812439 1 + G A LUAD 241812440 + 241812420 241812460 41 TTCGGTGGCATCCCTGGGCGGGACCCCCCTTTACATGGACC TTCGGTGGCATCCCTGGGCAGGACCCCCCTTTACATGGACC < 41bp 0.464260663759354 0.700154795429256 NA NA prediction 0.400309590858512 Functional Gain - AGXT ENSG00000172482 CDS Human protein_coding chr2:241812440 chr2:241812439 nonsynonymous SNV 0.068 5 20 hm7G_associated_SNPs_38901 1 0 1 0 2 AGXT chr2:241812466 5'GT 241812466 Upstream 28bp 35824 chr11 66328786 66328786 1 + C T UCEC 66328787 + 66328767 66328807 41 AGGCTCCGGCGACAGTTTGCGGCCCAGGCCAATGCCATTGG AGGCTCCGGCGACAGTTTGTGGCCCAGGCCAATGCCATTGG < 41bp 0.511840241129348 0.711994759270933 NA NA prediction 0.400309036283169 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66328787 chr11:66328786 unknown 0.995 2 20 hm7G_associated_SNPs_38902 0 0 0 0 2 ACTN3 chr11:66328698 3'AG 66328698 Downstream 89bp 35825 chr11 66328786 66328786 1 + C T UCEC 66328787 + 66328767 66328807 41 AGGCTCCGGCGACAGTTTGCGGCCCAGGCCAATGCCATTGG AGGCTCCGGCGACAGTTTGTGGCCCAGGCCAATGCCATTGG < 41bp 0.511840241129348 0.711994759270933 NA NA prediction 0.400309036283169 Functional Gain - ACTN3 ENSG00000248746 CDS Human protein_coding chr11:66328787 chr11:66328786 unknown 0.995 2 20 hm7G_associated_SNPs_38902 0 0 0 0 2 ACTN3 chr11:66328832 5'GT 66328832 Upstream 47bp 35826 chr1 151740548 151740548 1 + G A UCEC 151740549 + 151740529 151740569 41 TCCAGGCTGGGAACTTGACGGTGCTGGCTACTGACCCCCTG TCCAGGCTGGGAACTTGACAGTGCTGGCTACTGACCCCCTG < 41bp 0.510170524343676 0.710323493042382 NA NA prediction 0.400305937397412 Functional Gain - OAZ3 ENSG00000143450 CDS Human protein_coding chr1:151740549 chr1:151740548 synonymous SNV . 0 20 hm7G_associated_SNPs_38903 0 0 0 0 1 OAZ3 chr1:151740534 3'AG 151740534 Downstream 15bp 35827 chr18 19020262 19020262 1 + C T BRCA 19020263 + 19020243 19020283 41 TTCTGGGCCACCAAAGAAACGACACCGGGGATGGTATCCTG TTCTGGGCCACCAAAGAAATGACACCGGGGATGGTATCCTG < 41bp 0.541725571908902 0.741876468575536 NA NA prediction 0.400301793333268 Functional Gain - GREB1L ENSG00000141449 CDS Human protein_coding chr18:19020263 chr18:19020262 stopgain 1.000 0 20 hm7G_associated_SNPs_38905 0 0 0 0 2 GREB1L chr18:19020230 3'AG 19020230 Downstream 33bp 35828 chr18 19020262 19020262 1 + C T BRCA 19020263 + 19020243 19020283 41 TTCTGGGCCACCAAAGAAACGACACCGGGGATGGTATCCTG TTCTGGGCCACCAAAGAAATGACACCGGGGATGGTATCCTG < 41bp 0.541725571908902 0.741876468575536 NA NA prediction 0.400301793333268 Functional Gain - GREB1L ENSG00000141449 CDS Human protein_coding chr18:19020263 chr18:19020262 stopgain 1.000 0 20 hm7G_associated_SNPs_38905 0 0 0 0 2 GREB1L chr18:19020349 5'GT 19020349 Upstream 88bp 35829 chr3 119316770 119316770 1 + G T UCS 119316771 + 119316751 119316791 41 CAGCTCAGCGATGCCCCCAGGTCCCTGGGAGAGCTGCTTCT CAGCTCAGCGATGCCCCCATGTCCCTGGGAGAGCTGCTTCT < 41bp 0.379685785247092 0.70015086262974 NA NA prediction 0.400301725259479 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119316771 chr3:119316770 nonsynonymous SNV 0.014 3 20 hm7G_associated_SNPs_38906 0 0 0 0 1 PLA1A chr3:119316833 5'GT 119316833 Upstream 64bp 35830 chr1 175066783 175066783 1 + C T ESCA 175066784 + 175066764 175066804 41 CTGGGCCCAGAAGGGGGACCGAGAGAGCAAGAAGGCTGACA CTGGGCCCAGAAGGGGGACTGAGAGAGCAAGAAGGCTGACA < 41bp 0.543274630943424 0.743424952981494 NA NA prediction 0.400300644076139 Functional Gain - TNN ENSG00000120332 CDS Human protein_coding chr1:175066784 chr1:175066783 stopgain 0.982 0 20 hm7G_associated_SNPs_38907 0 0 0 0 1 TNN chr1:175066819 5'GT 175066819 Upstream 37bp 35831 chr17 33325292 33325292 1 + G A SKCM 33325293 + 33325273 33325313 41 GATCCAGGAGGGATTGGAGGGGCTGGTGCTGAAGGATGTGA GATCCAGGAGGGATTGGAGAGGCTGGTGCTGAAGGATGTGA < 41bp 0.481362693912736 0.700149166749898 NA NA prediction 0.400298333499797 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33325293 chr17:33325292 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_38908 0 0 1 0 2 LIG3 chr17:33325238 3'AG 33325238 Downstream 55bp 35832 chr17 33325292 33325292 1 + G A SKCM 33325293 + 33325273 33325313 41 GATCCAGGAGGGATTGGAGGGGCTGGTGCTGAAGGATGTGA GATCCAGGAGGGATTGGAGAGGCTGGTGCTGAAGGATGTGA < 41bp 0.481362693912736 0.700149166749898 NA NA prediction 0.400298333499797 Functional Gain - LIG3 ENSG00000005156 CDS Human protein_coding chr17:33325293 chr17:33325292 nonsynonymous SNV 0.999 5 20 hm7G_associated_SNPs_38908 0 0 1 0 2 LIG3 chr17:33325315 5'GT 33325315 Upstream 24bp 35833 chr19 48922912 48922912 1 + G A ESCA 48922913 + 48922893 48922933 41 CCCTGGTGTTCAATAATTCGGTGCCCGTGGAGAACCCCCGG CCCTGGTGTTCAATAATTCAGTGCCCGTGGAGAACCCCCGG < 41bp 0.563331563284401 0.763480004387162 NA NA prediction 0.400296882205522 Functional Gain - GRIN2D ENSG00000105464 CDS Human protein_coding chr19:48922913 chr19:48922912 synonymous SNV . 0 20 hm7G_associated_SNPs_38909 0 0 1 0 1 GRIN2D chr19:48922842 3'AG 48922842 Downstream 71bp 35834 chr6 150269878 150269878 1 + G A rs116057345 150269879 + 150269859 150269899 41 GTTAAAGCTGATACCAAAAGGCTCCTGTGAGCACGGTCTTG GTTAAAGCTGATACCAAAAAGCTCCTGTGAGCACGGTCTTG < 41bp 0.495211323501959 0.700147773585204 NA NA prediction 0.400295547170409 Functional Gain - ULBP2 ENSG00000131015 UTR3 Human protein_coding chr6:150269879 chr6:150269878 . . 0 20 hm7G_associated_SNPs_38910 0 0 0 0 1 ULBP2 chr6:150269859 3'AG 150269859 Downstream 20bp 35835 chr20 2384417 2384417 1 + G A COAD 2384418 + 2384398 2384438 41 GATGCATCAGCACCAAGGCGGTGGGCAGTGACTCCCGCGTG GATGCATCAGCACCAAGGCAGTGGGCAGTGACTCCCGCGTG < 41bp 0.523814473945712 0.723960360064904 NA NA prediction 0.400291772238383 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2384418 chr20:2384417 synonymous SNV . 0 20 hm7G_associated_SNPs_38913 0 0 0 0 1 TGM6 chr20:2384469 5'GT 2384469 Upstream 53bp 35836 chr20 43058230 43058230 1 + G A ESCA 43058231 + 43058211 43058251 41 AGCCCTATAAGCTCCTGCCGGGAGCCGTCGCCACAATCGTC AGCCCTATAAGCTCCTGCCAGGAGCCGTCGCCACAATCGTC < 41bp 0.510311820728182 0.710457516683333 NA NA prediction 0.400291391910302 Functional Gain - HNF4A ENSG00000101076 CDS Human protein_coding chr20:43058231 chr20:43058230 synonymous SNV . 0 20 hm7G_associated_SNPs_38914 0 0 1 0 1 HNF4A chr20:43058163 3'AG 43058163 Downstream 68bp 35837 chr19 10132252 10132252 1 + C T COAD 10132253 + 10132233 10132273 41 GACTCGACCACCCCTGCGCCGACAGACCAACATCCGCTACT GACTCGACCACCCCTGCGCTGACAGACCAACATCCGCTACT < 41bp 0.495013096153463 0.700144570150299 NA NA prediction 0.400289140300597 Functional Gain - RDH8 ENSG00000080511 CDS Human protein_coding chr19:10132253 chr19:10132252 stopgain 0.443 0 20 hm7G_associated_SNPs_38915 0 0 0 0 1 RDH8 chr19:10132210 3'AG 10132210 Downstream 43bp 35838 chr5 129037190 129037190 1 + C T SKCM 129037191 + 129037171 129037211 41 TGGAACACTGATTAGAGCCCGAGAGAGGGACTGCATTGGGC TGGAACACTGATTAGAGCCTGAGAGAGGGACTGCATTGGGC < 41bp 0.53532256555918 0.735465227287349 NA NA prediction 0.400285323456337 Functional Gain - ADAMTS19 ENSG00000145808 CDS Human protein_coding chr5:129037191 chr5:129037190 stopgain 0.951 1 20 hm7G_associated_SNPs_38918 0 0 0 1 1 ADAMTS19 chr5:129037285 5'GT 129037285 Upstream 96bp 35839 chr11 15096275 15096275 1 + G A SKCM 15096276 + 15096256 15096296 41 AGAGGCGGCATGGGTTTCCGGAAGTTCTCCCCCTTCCTGGC AGAGGCGGCATGGGTTTCCAGAAGTTCTCCCCCTTCCTGGC < 41bp 0.503077451661984 0.703219465480372 NA NA prediction 0.400284027636775 Functional Gain - CALCB ENSG00000175868 CDS Human protein_coding chr11:15096276 chr11:15096275 nonsynonymous SNV 0.943 0 20 hm7G_associated_SNPs_38919 0 0 0 0 2 CALCB chr11:15096256 3'AG 15096256 Downstream 20bp 35840 chr11 15096275 15096275 1 + G A SKCM 15096276 + 15096256 15096296 41 AGAGGCGGCATGGGTTTCCGGAAGTTCTCCCCCTTCCTGGC AGAGGCGGCATGGGTTTCCAGAAGTTCTCCCCCTTCCTGGC < 41bp 0.503077451661984 0.703219465480372 NA NA prediction 0.400284027636775 Functional Gain - CALCB ENSG00000175868 CDS Human protein_coding chr11:15096276 chr11:15096275 nonsynonymous SNV 0.943 0 20 hm7G_associated_SNPs_38919 0 0 0 0 2 CALCB chr11:15096350 5'GT 15096350 Upstream 76bp 35841 chr21 45539369 45539369 1 + G A CESC 45539370 + 45539350 45539390 41 CCTGGCCTACTCGCCCGACGGACAGTACATCGTGACTGGCG CCTGGCCTACTCGCCCGACAGACAGTACATCGTGACTGGCG < 41bp 0.556252025442137 0.756392457197869 NA NA prediction 0.400280863511463 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45539370 chr21:45539369 nonsynonymous SNV 0.842 4 20 hm7G_associated_SNPs_38923 0 0 1 0 1 PWP2 chr21:45539404 5'GT 45539404 Upstream 36bp 35842 chr15 27128619 27128619 1 + G A COAD 27128620 + 27128600 27128640 41 AGACACGTTCTTCCACAACGGGAAGAAGTCCATCGCTCACA AGACACGTTCTTCCACAACAGGAAGAAGTCCATCGCTCACA < 41bp 0.550674280338346 0.750813977692987 NA NA prediction 0.400279394709283 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128620 chr15:27128619 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38924 0 0 0 0 1 GABRA5 chr15:27128704 5'GT 27128704 Upstream 86bp 35843 chr10 30986348 30986348 1 + G A rs4749588 30986349 + 30986329 30986369 41 TGGTGGAACCTCGAGCTTCGGCGCTCAATAGTGGGGACTGC TGGTGGAACCTCGAGCTTCAGCGCTCAATAGTGGGGACTGC < 41bp 0.507149537590179 0.707288788867805 NA NA prediction 0.400278502555252 Functional Gain - SVILP1 ENSG00000234814 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:30986349 chr10:30986348 . . 0 20 hm7G_associated_SNPs_38926 0 0 0 0 2 SVILP1 chr10:30986305 3'AG 30986305 Downstream 44bp 35844 chr10 30986348 30986348 1 + G A rs4749588 30986349 + 30986329 30986369 41 TGGTGGAACCTCGAGCTTCGGCGCTCAATAGTGGGGACTGC TGGTGGAACCTCGAGCTTCAGCGCTCAATAGTGGGGACTGC < 41bp 0.507149537590179 0.707288788867805 NA NA prediction 0.400278502555252 Functional Gain - SVILP1 ENSG00000234814 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr10:30986349 chr10:30986348 . . 0 20 hm7G_associated_SNPs_38926 0 0 0 0 2 SVILP1 chr10:30986441 5'GT 30986441 Upstream 94bp 35845 chr13 113508638 113508638 1 + C T HNSC 113508639 + 113508619 113508659 41 TCGAGGCCCTGCAGAAGGCCGGGATCAAAGTCTGGGTTCTC TCGAGGCCCTGCAGAAGGCTGGGATCAAAGTCTGGGTTCTC < 41bp 0.483926254670373 0.700139054424471 NA NA prediction 0.400278108848941 Functional Gain - ATP11A ENSG00000068650 CDS Human protein_coding chr13:113508639 chr13:113508638 synonymous SNV . 0 20 hm7G_associated_SNPs_38927 0 0 1 0 1 ATP11A chr13:113508593 3'AG 113508593 Downstream 46bp 35846 chr1 36024804 36024804 1 + C T UCEC 36024805 + 36024785 36024825 41 GCGCTACCTGGGAGCCCTCCGTGAGGCCAAGAATGACAGCG GCGCTACCTGGGAGCCCTCTGTGAGGCCAAGAATGACAGCG < 41bp 0.534279601407136 0.734418466208234 NA NA prediction 0.400277729602196 Functional Gain - NCDN ENSG00000020129 CDS Human protein_coding chr1:36024805 chr1:36024804 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38928 0 0 1 0 2 NCDN chr1:36024708 3'AG 36024708 Downstream 97bp 35847 chr1 36024804 36024804 1 + C T UCEC 36024805 + 36024785 36024825 41 GCGCTACCTGGGAGCCCTCCGTGAGGCCAAGAATGACAGCG GCGCTACCTGGGAGCCCTCTGTGAGGCCAAGAATGACAGCG < 41bp 0.534279601407136 0.734418466208234 NA NA prediction 0.400277729602196 Functional Gain - NCDN ENSG00000020129 CDS Human protein_coding chr1:36024805 chr1:36024804 nonsynonymous SNV 1.000 3 20 hm7G_associated_SNPs_38928 0 0 1 0 2 NCDN chr1:36024848 5'GT 36024848 Upstream 45bp 35848 chr11 64361211 64361211 1 + C T COAD 64361212 + 64361192 64361232 41 TGCAGTGGCCTACGGTGTGCGGGACTGGACACTGCTGCAGC TGCAGTGGCCTACGGTGTGTGGGACTGGACACTGCTGCAGC < 41bp 0.522043439529839 0.722182160615419 NA NA prediction 0.400277442171161 Functional Gain - SLC22A12 ENSG00000197891 CDS Human protein_coding chr11:64361212 chr11:64361211 nonsynonymous SNV 0.289 3 20 hm7G_associated_SNPs_38929 0 0 0 0 1 SLC22A12 chr11:64361275 5'GT 64361275 Upstream 65bp 35849 chr19 56160660 56160660 1 + C T BLCA 56160661 + 56160641 56160681 41 TTACAGTCTGAGCCCCTCTCGGAGAAACTTCGAGGGTGAGC TTACAGTCTGAGCCCCTCTTGGAGAAACTTCGAGGGTGAGC < 41bp 0.485939353794016 0.700137533885791 NA NA prediction 0.400275067771581 Functional Gain - CCDC106 ENSG00000173581 CDS Human protein_coding chr19:56160661 chr19:56160660 nonsynonymous SNV 0.269 2 20 hm7G_associated_SNPs_38931 0 0 1 0 1 CCDC106 chr19:56160571 3'AG 56160571 Downstream 90bp 35850 chr2 234854619 234854619 1 + C T STAD 234854620 + 234854600 234854640 41 GTCATGGACATCCCACTGTCGAAGCAAAGCTCCGGAATCAG GTCATGGACATCCCACTGTTGAAGCAAAGCTCCGGAATCAG < 41bp 0.48621385546666 0.700137197370951 NA NA prediction 0.400274394741902 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234854620 chr2:234854619 synonymous SNV . 0 20 hm7G_associated_SNPs_38933 0 0 0 0 1 TRPM8 chr2:234854674 5'GT 234854674 Upstream 56bp 35851 chr11 134241679 134241679 1 + C T COAD 134241680 + 134241660 134241700 41 GAGGATCTTGGTGGAGAATCGTGGGCGAGTCAACTATGGGG GAGGATCTTGGTGGAGAATTGTGGGCGAGTCAACTATGGGG < 41bp 0.505765603112254 0.705899260162619 NA NA prediction 0.40026731410073 Functional Gain - GLB1L2 ENSG00000149328 CDS Human protein_coding chr11:134241680 chr11:134241679 nonsynonymous SNV 0.998 1 20 hm7G_associated_SNPs_38934 0 0 1 0 1 GLB1L2 chr11:134241724 5'GT 134241724 Upstream 46bp 35852 chr18 2738531 2738531 1 + C T CESC 2738532 + 2738512 2738552 41 CATGTGTCTTTGGAAAGTGCGTTTACAGTAAGGTTTGTGGA CATGTGTCTTTGGAAAGTGTGTTTACAGTAAGGTTTGTGGA < 41bp 0.50158946256447 0.701723005689829 NA NA prediction 0.400267086250718 Functional Gain - SMCHD1 ENSG00000101596 CDS Human protein_coding chr18:2738532 chr18:2738531 nonsynonymous SNV 0.997 2 20 hm7G_associated_SNPs_38935 0 0 1 0 1 SMCHD1 chr18:2738543 5'GT 2738543 Upstream 13bp 35853 chr2 29255901 29255901 1 + C T UCEC 29255902 + 29255882 29255922 41 GACTTGCAGAAGGTCATGGCGGCCATTAAACAGCAGGTGAG GACTTGCAGAAGGTCATGGTGGCCATTAAACAGCAGGTGAG < 41bp 0.564120681620813 0.76424641640103 NA NA prediction 0.400251469560432 Functional Gain - TOGARAM2 ENSG00000189350 CDS Human protein_coding chr2:29255902 chr2:29255901 nonsynonymous SNV 0.564 0 20 hm7G_associated_SNPs_38942 0 0 0 0 1 TOGARAM2 chr2:29255917 5'GT 29255917 Upstream 17bp 35854 chr14 24030810 24030810 1 - G A rs34987563 24030809 - 24030789 24030829 41 AAAAATGCCTCTTGTGGAGCGAGATGGCCCTCAGGCTGATG AAAAATGCCTCTTGTGGAGTGAGATGGCCCTCAGGCTGATG < 41bp 0.519088519320749 0.719213782553331 NA NA prediction 0.400250526465165 Functional Gain - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24030809 chr14:24030810 stopgain 0.011 0 20 hm7G_associated_SNPs_38943 0 0 1 0 2 AP1G2 chr14:24030721 5'GT 24030721 Upstream 90bp 35855 chr14 24030810 24030810 1 - G A rs34987563 24030809 - 24030789 24030829 41 AAAAATGCCTCTTGTGGAGCGAGATGGCCCTCAGGCTGATG AAAAATGCCTCTTGTGGAGTGAGATGGCCCTCAGGCTGATG < 41bp 0.519088519320749 0.719213782553331 NA NA prediction 0.400250526465165 Functional Gain - AP1G2 ENSG00000213983 CDS Human protein_coding chr14:24030809 chr14:24030810 stopgain 0.011 0 20 hm7G_associated_SNPs_38943 0 0 1 0 2 AP1G2 chr14:24030844 3'AG 24030844 Downstream 35bp 35856 chr8 1513946 1513946 1 + G A SKCM 1513947 + 1513927 1513967 41 AGTTACATTAAAGCCATGGGGGACGAGGAGAGCGGAGAGTC AGTTACATTAAAGCCATGGAGGACGAGGAGAGCGGAGAGTC < 41bp 0.529374259856917 0.729498969780533 NA NA prediction 0.400249419847232 Functional Gain - DLGAP2 ENSG00000198010 CDS Human protein_coding chr8:1513947 chr8:1513946 nonsynonymous SNV 0.989 4 20 hm7G_associated_SNPs_38944 0 0 0 0 1 DLGAP2 chr8:1513849 3'AG 1513849 Downstream 98bp 35857 chr6 16145533 16145533 1 + C T COAD 16145534 + 16145514 16145554 41 CTGTGTGCTGTGAGAGCTGCGCCGCCCAGCTACAGGTAGGG CTGTGTGCTGTGAGAGCTGTGCCGCCCAGCTACAGGTAGGG < 41bp 0.519195084439448 0.719319024353783 NA NA prediction 0.40024787982867 Functional Gain - MYLIP ENSG00000007944 CDS Human protein_coding chr6:16145534 chr6:16145533 synonymous SNV . 0 20 hm7G_associated_SNPs_38945 0 0 1 0 1 MYLIP chr6:16145548 5'GT 16145548 Upstream 16bp 35858 chr14 73719472 73719472 1 + G A rs142604802 73719473 + 73719453 73719493 41 GCAATCTTCACCCTTGCCCGGAGACCAAGCGGTGAGACCTT GCAATCTTCACCCTTGCCCAGAGACCAAGCGGTGAGACCTT < 41bp 0.491923235932274 0.700123867727129 NA NA prediction 0.400247735454258 Functional Gain - PAPLN ENSG00000100767 CDS Human protein_coding chr14:73719473 chr14:73719472 synonymous SNV . 0 20 hm7G_associated_SNPs_38946 0 0 0 0 1 PAPLN chr14:73719483 5'GT 73719483 Upstream 12bp 35859 chr4 89425476 89425476 1 + C T CESC 89425477 + 89425457 89425497 41 GAGGATTTTATAAAATGTGCGACGAAGACATTATCAAATTA GAGGATTTTATAAAATGTGTGACGAAGACATTATCAAATTA < 41bp 0.532897293733521 0.733020363281854 NA NA prediction 0.400246139096666 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89425477 chr4:89425476 synonymous SNV . 0 20 hm7G_associated_SNPs_38947 0 0 1 0 2 HERC5 chr4:89425383 3'AG 89425383 Downstream 94bp 35860 chr4 89425476 89425476 1 + C T CESC 89425477 + 89425457 89425497 41 GAGGATTTTATAAAATGTGCGACGAAGACATTATCAAATTA GAGGATTTTATAAAATGTGTGACGAAGACATTATCAAATTA < 41bp 0.532897293733521 0.733020363281854 NA NA prediction 0.400246139096666 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89425477 chr4:89425476 synonymous SNV . 0 20 hm7G_associated_SNPs_38947 0 0 1 0 2 HERC5 chr4:89425566 5'GT 89425566 Upstream 91bp 35861 chr15 48577380 48577380 1 + G T UCEC 48577381 + 48577361 48577401 41 TGAGTGTGAAGAGGAAAGTGGAGGCATCCGAGGCTTGTTTA TGAGTGTGAAGAGGAAAGTTGAGGCATCCGAGGCTTGTTTA < 41bp 0.369093350896739 0.700121035221885 NA NA prediction 0.400242070443771 Functional Gain - SLC12A1 ENSG00000074803 CDS Human protein_coding chr15:48577381 chr15:48577380 stopgain 0.441 0 20 hm7G_associated_SNPs_38948 0 0 0 0 1 SLC12A1 chr15:48577303 3'AG 48577303 Downstream 78bp 35862 chr5 7873554 7873554 1 + C T UCEC 7873555 + 7873535 7873575 41 CGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTTGTT CGGGCACCGGAGACCCACCTGACACAGCCCGCAAGTTTGTT < 41bp 0.489785240851894 0.700120001152831 NA NA prediction 0.400240002305663 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873555 chr5:7873554 synonymous SNV . 0 20 hm7G_associated_SNPs_38949 0 0 0 1 3 MTRR chr5:7873486 3'AG 7873486 Downstream 69bp 35863 chr5 7873554 7873554 1 + C T UCEC 7873555 + 7873535 7873575 41 CGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTTGTT CGGGCACCGGAGACCCACCTGACACAGCCCGCAAGTTTGTT < 41bp 0.489785240851894 0.700120001152831 NA NA prediction 0.400240002305663 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873555 chr5:7873554 synonymous SNV . 0 20 hm7G_associated_SNPs_38949 0 0 0 1 3 MTRR chr5:7873625 5'GT 7873625 Upstream 72bp 35864 chr5 7873554 7873554 1 + C T UCEC 7873555 + 7873535 7873575 41 CGGGCACCGGAGACCCACCCGACACAGCCCGCAAGTTTGTT CGGGCACCGGAGACCCACCTGACACAGCCCGCAAGTTTGTT < 41bp 0.489785240851894 0.700120001152831 NA NA prediction 0.400240002305663 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7873555 chr5:7873554 synonymous SNV . 0 20 hm7G_associated_SNPs_38949 0 0 0 1 3 MTRR chr5:7873639 5'GT 7873639 Upstream 86bp 35865 chr2 102791960 102791960 1 + C T rs113665542 102791961 + 102791941 102791981 41 CAGATGGAAAGACCTATGACGCATATATACTGTATCCAAAG CAGATGGAAAGACCTATGATGCATATATACTGTATCCAAAG < 41bp 0.520912892882812 0.721032593971199 NA NA prediction 0.400239402176773 Functional Gain - IL1R1 ENSG00000115594 CDS Human protein_coding chr2:102791961 chr2:102791960 synonymous SNV . 0 20 hm7G_associated_SNPs_38950 0 0 0 0 1 IL1R1 chr2:102791938 3'AG 102791938 Downstream 23bp 35866 chr9 128094306 128094306 1 + C T COAD 128094307 + 128094287 128094327 41 TGTCAGGGAGGTCAGTTCCCGCCCCAGCACACCAGGCCTCA TGTCAGGGAGGTCAGTTCCTGCCCCAGCACACCAGGCCTCA < 41bp 0.557531206773053 0.757649537420973 NA NA prediction 0.400236661295839 Functional Gain - GAPVD1 ENSG00000165219 CDS Human protein_coding chr9:128094307 chr9:128094306 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_38952 0 0 1 0 1 GAPVD1 chr9:128094339 5'GT 128094339 Upstream 34bp 35867 chr8 145694974 145694974 1 + C T COAD 145694975 + 145694955 145694995 41 CACCACCTGCTACCGGGGGCGCCATCGTCGATTCCGCCTAG CACCACCTGCTACCGGGGGTGCCATCGTCGATTCCGCCTAG < 41bp 0.544527182344752 0.744643046635838 NA NA prediction 0.400231728582171 Functional Gain - KIFC2 ENSG00000167702 CDS Human protein_coding chr8:145694975 chr8:145694974 nonsynonymous SNV 0.992 2 20 hm7G_associated_SNPs_38955 0 0 0 0 1 KIFC2 chr8:145695030 5'GT 145695030 Upstream 57bp 35868 chr10 101458321 101458321 1 + C T rs193135919 101458322 + 101458302 101458342 41 AGAAGACAGGTCTGAGTCCCGACAATCCATTTCTGGATCCC AGAAGACAGGTCTGAGTCCTGACAATCCATTTCTGGATCCC < 41bp 0.54334755049712 0.74345939766964 NA NA prediction 0.400223694345041 Functional Gain - ENTPD7 ENSG00000198018 CDS Human protein_coding chr10:101458322 chr10:101458321 synonymous SNV . 0 20 hm7G_associated_SNPs_38957 0 0 1 0 1 ENTPD7 chr10:101458291 3'AG 101458291 Downstream 31bp 35869 chr5 134077145 134077145 1 + C T UCEC 134077146 + 134077126 134077166 41 AGAAGAATTTGACTCTTTTCGAATATTTAGATTGGTGGGAT AGAAGAATTTGACTCTTTTTGAATATTTAGATTGGTGGGAT < 41bp 0.510911920442433 0.711022876829065 NA NA prediction 0.400221912773263 Functional Gain - CAMLG ENSG00000164615 CDS Human protein_coding chr5:134077146 chr5:134077145 stopgain 1.000 1 20 hm7G_associated_SNPs_38958 0 0 1 0 1 CAMLG chr5:134077213 5'GT 134077213 Upstream 69bp 35870 chr16 90024045 90024045 1 + C T UCEC 90024046 + 90024026 90024066 41 GGTGCGACTCATCCACCTCCGGCTGAAGCTCCAGGAGCTGA GGTGCGACTCATCCACCTCTGGCTGAAGCTCCAGGAGCTGA < 41bp 0.548623740860753 0.748731747102973 NA NA prediction 0.40021601248444 Functional Gain - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90024046 chr16:90024045 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38960 0 0 1 0 2 DEF8 chr16:90023949 3'AG 90023949 Downstream 97bp 35871 chr16 90024045 90024045 1 + C T UCEC 90024046 + 90024026 90024066 41 GGTGCGACTCATCCACCTCCGGCTGAAGCTCCAGGAGCTGA GGTGCGACTCATCCACCTCTGGCTGAAGCTCCAGGAGCTGA < 41bp 0.548623740860753 0.748731747102973 NA NA prediction 0.40021601248444 Functional Gain - DEF8 ENSG00000140995 CDS Human protein_coding chr16:90024046 chr16:90024045 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_38960 0 0 1 0 2 DEF8 chr16:90024068 5'GT 90024068 Upstream 24bp 35872 chr4 160243561 160243561 1 + C T CESC 160243562 + 160243542 160243582 41 TATGACAATGTCAGTGAGGCGAGAACTCTGTGCTGTGATGG TATGACAATGTCAGTGAGGTGAGAACTCTGTGCTGTGATGG < 41bp 0.485611553932679 0.700106808965275 NA NA prediction 0.400213617930549 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160243562 chr4:160243561 stopgain 0.997 1 20 hm7G_associated_SNPs_38961 0 0 1 0 2 RAPGEF2 chr4:160243499 3'AG 160243499 Downstream 63bp 35873 chr4 160243561 160243561 1 + C T CESC 160243562 + 160243542 160243582 41 TATGACAATGTCAGTGAGGCGAGAACTCTGTGCTGTGATGG TATGACAATGTCAGTGAGGTGAGAACTCTGTGCTGTGATGG < 41bp 0.485611553932679 0.700106808965275 NA NA prediction 0.400213617930549 Functional Gain - RAPGEF2 ENSG00000109756 CDS Human protein_coding chr4:160243562 chr4:160243561 stopgain 0.997 1 20 hm7G_associated_SNPs_38961 0 0 1 0 2 RAPGEF2 chr4:160243635 5'GT 160243635 Upstream 75bp 35874 chr19 12866266 12866266 1 + C T STAD 12866267 + 12866247 12866287 41 AGCGTACCCCTCGTGTACACGCAGGTAACCCCATCATGCCT AGCGTACCCCTCGTGTACATGCAGGTAACCCCATCATGCCT < 41bp 0.520056439991575 0.720162755001274 NA NA prediction 0.400212630019398 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12866267 chr19:12866266 nonsynonymous SNV 0.724 5 20 hm7G_associated_SNPs_38962 0 0 0 0 2 BEST2 chr19:12866193 3'AG 12866193 Downstream 74bp 35875 chr19 12866266 12866266 1 + C T STAD 12866267 + 12866247 12866287 41 AGCGTACCCCTCGTGTACACGCAGGTAACCCCATCATGCCT AGCGTACCCCTCGTGTACATGCAGGTAACCCCATCATGCCT < 41bp 0.520056439991575 0.720162755001274 NA NA prediction 0.400212630019398 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12866267 chr19:12866266 nonsynonymous SNV 0.724 5 20 hm7G_associated_SNPs_38962 0 0 0 0 2 BEST2 chr19:12866270 5'GT 12866270 Upstream 5bp 35876 chr16 81743392 81743392 1 + C T UCEC 81743393 + 81743373 81743413 41 AAGTGGACGTCCGCTACACCGAAGCCTGGTGAAGCTCCCAG AAGTGGACGTCCGCTACACTGAAGCCTGGTGAAGCTCCCAG < 41bp 0.489607470318659 0.700105637146624 NA NA prediction 0.400211274293248 Functional Gain - CMIP ENSG00000153815 CDS Human protein_coding chr16:81743393 chr16:81743392 synonymous SNV . 0 20 hm7G_associated_SNPs_38963 0 0 1 0 1 CMIP chr16:81743351 3'AG 81743351 Downstream 42bp 35877 chr11 20515715 20515715 1 + C T LGG 20515716 + 20515696 20515736 41 GAACTTTACCAATTCAGGTCGTGTTCTCTACGGGCCCTCAG GAACTTTACCAATTCAGGTTGTGTTCTCTACGGGCCCTCAG < 41bp 0.501248084636154 0.70135251875928 NA NA prediction 0.400208868246252 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515716 chr11:20515715 synonymous SNV . 0 20 hm7G_associated_SNPs_38965 0 0 1 0 2 PRMT3 chr11:20515713 3'AG 20515713 Downstream 3bp 35878 chr11 20515715 20515715 1 + C T LGG 20515716 + 20515696 20515736 41 GAACTTTACCAATTCAGGTCGTGTTCTCTACGGGCCCTCAG GAACTTTACCAATTCAGGTTGTGTTCTCTACGGGCCCTCAG < 41bp 0.501248084636154 0.70135251875928 NA NA prediction 0.400208868246252 Functional Gain - PRMT3 ENSG00000185238 CDS Human protein_coding chr11:20515716 chr11:20515715 synonymous SNV . 0 20 hm7G_associated_SNPs_38965 0 0 1 0 2 PRMT3 chr11:20515800 5'GT 20515800 Upstream 86bp 35879 chr3 148741877 148741877 1 + C T UCEC 148741878 + 148741858 148741898 41 AGTTGTGCATTTCCTGGGACGAGTCAAACCATGGAATTATA AGTTGTGCATTTCCTGGGATGAGTCAAACCATGGAATTATA < 41bp 0.551203488203912 0.751305722541445 NA NA prediction 0.400204468675067 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148741878 chr3:148741877 stopgain 0.994 0 20 hm7G_associated_SNPs_38968 0 0 1 0 1 GYG1 chr3:148741840 3'AG 148741840 Downstream 38bp 35880 chr19 11240277 11240277 1 + C T COAD 11240278 + 11240258 11240298 41 GCATCAACTTTGACAACCCCGTCTATCAGAAGACCACAGAG GCATCAACTTTGACAACCCTGTCTATCAGAAGACCACAGAG < 41bp 0.510938032354152 0.711037655714655 NA NA prediction 0.400199246721005 Functional Gain - LDLR ENSG00000130164 CDS Human protein_coding chr19:11240278 chr19:11240277 nonsynonymous SNV 0.853 2 20 hm7G_associated_SNPs_38970 0 0 1 0 2 LDLR chr19:11240189 3'AG 11240189 Downstream 89bp 35881 chr19 11240277 11240277 1 + C T COAD 11240278 + 11240258 11240298 41 GCATCAACTTTGACAACCCCGTCTATCAGAAGACCACAGAG GCATCAACTTTGACAACCCTGTCTATCAGAAGACCACAGAG < 41bp 0.510938032354152 0.711037655714655 NA NA prediction 0.400199246721005 Functional Gain - LDLR ENSG00000130164 CDS Human protein_coding chr19:11240278 chr19:11240277 nonsynonymous SNV 0.853 2 20 hm7G_associated_SNPs_38970 0 0 1 0 2 LDLR chr19:11240346 5'GT 11240346 Upstream 70bp 35882 chr14 56746482 56746482 1 + C T COAD 56746483 + 56746463 56746503 41 TACACACATGATAAGGATACGGATATGTTTCAGGTAATATT TACACACATGATAAGGATATGGATATGTTTCAGGTAATATT < 41bp 0.529910283853966 0.730009819477414 NA NA prediction 0.400199071246896 Functional Gain - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56746483 chr14:56746482 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_38971 0 0 0 0 2 PELI2 chr14:56746394 3'AG 56746394 Downstream 89bp 35883 chr14 56746482 56746482 1 + C T COAD 56746483 + 56746463 56746503 41 TACACACATGATAAGGATACGGATATGTTTCAGGTAATATT TACACACATGATAAGGATATGGATATGTTTCAGGTAATATT < 41bp 0.529910283853966 0.730009819477414 NA NA prediction 0.400199071246896 Functional Gain - PELI2 ENSG00000139946 CDS Human protein_coding chr14:56746483 chr14:56746482 nonsynonymous SNV 0.991 2 20 hm7G_associated_SNPs_38971 0 0 0 0 2 PELI2 chr14:56746495 5'GT 56746495 Upstream 14bp 35884 chr6 154567885 154567885 1 - G A rs201296055 154567884 - 154567864 154567904 41 ATCATTGCAGGTTTTCTCACGATGAGTCGGAGGAGGATATC ATCATTGCAGGTTTTCTCATGATGAGTCGGAGGAGGATATC < 41bp 0.511246751276169 0.711343669695156 NA NA prediction 0.400193836837973 Functional Gain - IPCEF1;OPRM1 ENSG00000074706;ENSG00000112038 CDS Human other chr6:154567884 chr6:154567885 nonsynonymous SNV 0.629 0 20 hm7G_associated_SNPs_38972 0 0 0 0 1 IPCEF1;OPRM1 chr6:154567894 3'AG 154567894 Downstream 10bp 35885 chr4 144445524 144445524 1 + C T KIRP 144445525 + 144445505 144445545 41 TTTTCATCTTAACAGTTACCGACACCGTAGAACAGAGCAAG TTTTCATCTTAACAGTTACTGACACCGTAGAACAGAGCAAG < 41bp 0.52458980905512 0.724682069085958 NA NA prediction 0.400184520061677 Functional Gain - SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144445525 chr4:144445524 stopgain 0.976 1 20 hm7G_associated_SNPs_38978 0 0 1 0 2 SMARCA5 chr4:144445520 3'AG 144445520 Downstream 5bp 35886 chr4 144445524 144445524 1 + C T KIRP 144445525 + 144445505 144445545 41 TTTTCATCTTAACAGTTACCGACACCGTAGAACAGAGCAAG TTTTCATCTTAACAGTTACTGACACCGTAGAACAGAGCAAG < 41bp 0.52458980905512 0.724682069085958 NA NA prediction 0.400184520061677 Functional Gain - SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144445525 chr4:144445524 stopgain 0.976 1 20 hm7G_associated_SNPs_38978 0 0 1 0 2 SMARCA5 chr4:144445620 5'GT 144445620 Upstream 97bp 35887 chr19 41094554 41094554 1 + G A UCEC 41094555 + 41094535 41094575 41 GCCGACAACAACCACGTGCGGACATGGTCTGTGACTCGCTT GCCGACAACAACCACGTGCAGACATGGTCTGTGACTCGCTT < 41bp 0.482405267248537 0.700088624504662 NA NA prediction 0.400177249009324 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41094555 chr19:41094554 nonsynonymous SNV 0.947 3 20 hm7G_associated_SNPs_38979 0 0 1 0 1 SHKBP1 chr19:41094530 3'AG 41094530 Downstream 25bp 35888 chr22 24106284 24106284 1 + G A rs538706829 24106285 + 24106265 24106305 41 TCTCCACAGCTGGCTGCTCGGTGCTGGTGAACACCTCTTGC TCTCCACAGCTGGCTGCTCAGTGCTGGTGAACACCTCTTGC < 41bp 0.483940911769183 0.700088460745941 NA NA prediction 0.400176921491883 Functional Gain - C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24106285 chr22:24106284 synonymous SNV . 0 20 hm7G_associated_SNPs_38980 0 0 0 0 2 C22orf15 chr22:24106274 3'AG 24106274 Downstream 11bp 35889 chr22 24106284 24106284 1 + G A rs538706829 24106285 + 24106265 24106305 41 TCTCCACAGCTGGCTGCTCGGTGCTGGTGAACACCTCTTGC TCTCCACAGCTGGCTGCTCAGTGCTGGTGAACACCTCTTGC < 41bp 0.483940911769183 0.700088460745941 NA NA prediction 0.400176921491883 Functional Gain - C22orf15 ENSG00000169314 CDS Human protein_coding chr22:24106285 chr22:24106284 synonymous SNV . 0 20 hm7G_associated_SNPs_38980 0 0 0 0 2 C22orf15 chr22:24106360 5'GT 24106360 Upstream 77bp 35890 chr20 5974312 5974312 1 + C T STAD 5974313 + 5974293 5974333 41 ATTTCAATTTCATCAACTTCGGCAGATTGCCAAAGAACTAA ATTTCAATTTCATCAACTTTGGCAGATTGCCAAAGAACTAA < 41bp 0.507312067121395 0.707399192740227 NA NA prediction 0.400174251237665 Functional Gain - MCM8 ENSG00000125885 CDS Human protein_coding chr20:5974313 chr20:5974312 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_38982 0 0 1 0 1 MCM8 chr20:5974341 5'GT 5974341 Upstream 30bp 35891 chr16 89613074 89613074 1 + G A BLCA 89613075 + 89613055 89613095 41 GGTTCTGGCAGGAGAGGCGGGAGATTTTTGAGCAGCACCTG GGTTCTGGCAGGAGAGGCGAGAGATTTTTGAGCAGCACCTG < 41bp 0.543359103463495 0.743443364185149 NA NA prediction 0.400168521443308 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89613075 chr16:89613074 synonymous SNV . 0 20 hm7G_associated_SNPs_38984 0 0 1 0 2 SPG7 chr16:89613066 3'AG 89613066 Downstream 9bp 35892 chr16 89613074 89613074 1 + G A BLCA 89613075 + 89613055 89613095 41 GGTTCTGGCAGGAGAGGCGGGAGATTTTTGAGCAGCACCTG GGTTCTGGCAGGAGAGGCGAGAGATTTTTGAGCAGCACCTG < 41bp 0.543359103463495 0.743443364185149 NA NA prediction 0.400168521443308 Functional Gain - SPG7 ENSG00000197912 CDS Human protein_coding chr16:89613075 chr16:89613074 synonymous SNV . 0 20 hm7G_associated_SNPs_38984 0 0 1 0 2 SPG7 chr16:89613168 5'GT 89613168 Upstream 95bp 35893 chr7 31009576 31009576 1 + G T rs4988498 31009577 + 31009557 31009597 41 CTCTGGAGCTGCTGGCTGAGGAGGTAAGAGTCTTCTGGCAT CTCTGGAGCTGCTGGCTGATGAGGTAAGAGTCTTCTGGCAT < 41bp 0.369675885288651 0.700082692940013 NA NA prediction 0.400165385880025 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31009577 chr7:31009576 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_38985 2 0 0 0 2 GHRHR chr7:31009482 3'AG 31009482 Downstream 95bp 35894 chr7 31009576 31009576 1 + G T rs4988498 31009577 + 31009557 31009597 41 CTCTGGAGCTGCTGGCTGAGGAGGTAAGAGTCTTCTGGCAT CTCTGGAGCTGCTGGCTGATGAGGTAAGAGTCTTCTGGCAT < 41bp 0.369675885288651 0.700082692940013 NA NA prediction 0.400165385880025 Functional Gain - GHRHR ENSG00000106128 CDS Human protein_coding chr7:31009577 chr7:31009576 nonsynonymous SNV 0.990 0 20 hm7G_associated_SNPs_38985 2 0 0 0 2 GHRHR chr7:31009579 5'GT 31009579 Upstream 4bp 35895 chr14 65054985 65054985 1 + G A SKCM 65054986 + 65054966 65055006 41 CGAGATGCAAAAGCATGTGGGAACTCTGGACTCTGTGCCCA CGAGATGCAAAAGCATGTGAGAACTCTGGACTCTGTGCCCA < 41bp 0.523554743538977 0.723635699977587 NA NA prediction 0.400161912877221 Functional Gain - PPP1R36 ENSG00000165807 CDS Human protein_coding chr14:65054986 chr14:65054985 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_38987 0 0 0 0 1 PPP1R36 chr14:65055013 5'GT 65055013 Upstream 29bp 35896 chr16 4790235 4790235 1 + G A STAD 4790236 + 4790216 4790256 41 GGATGCATCCTCTCAGGAAGGAAGAGACCCTGGCAGGCCTT GGATGCATCCTCTCAGGAAAGAAGAGACCCTGGCAGGCCTT < 41bp 0.538745731512835 0.738826605435562 NA NA prediction 0.400161747845455 Functional Gain - C16orf71 ENSG00000166246 CDS Human protein_coding chr16:4790236 chr16:4790235 nonsynonymous SNV 0.003 1 20 hm7G_associated_SNPs_38988 0 0 0 0 1 C16orf71 chr16:4790154 3'AG 4790154 Downstream 82bp 35897 chr10 129845660 129845660 1 + C T BLCA 129845661 + 129845641 129845681 41 GCTTCTCCTGCAGGCCCTCCGGACCCGGGCGCCTCCCAGCC GCTTCTCCTGCAGGCCCTCTGGACCCGGGCGCCTCCCAGCC < 41bp 0.488799384961561 0.700080079392245 NA NA prediction 0.400160158784489 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129845661 chr10:129845660 nonsynonymous SNV 0.101 1 20 hm7G_associated_SNPs_38990 0 0 0 0 2 PTPRE chr10:129845654 3'AG 129845654 Downstream 7bp 35898 chr10 129845660 129845660 1 + C T BLCA 129845661 + 129845641 129845681 41 GCTTCTCCTGCAGGCCCTCCGGACCCGGGCGCCTCCCAGCC GCTTCTCCTGCAGGCCCTCTGGACCCGGGCGCCTCCCAGCC < 41bp 0.488799384961561 0.700080079392245 NA NA prediction 0.400160158784489 Functional Gain - PTPRE ENSG00000132334 CDS Human protein_coding chr10:129845661 chr10:129845660 nonsynonymous SNV 0.101 1 20 hm7G_associated_SNPs_38990 0 0 0 0 2 PTPRE chr10:129845753 5'GT 129845753 Upstream 94bp 35899 chr4 1808588 1808588 1 + C T rs555257146 1808589 + 1808569 1808609 41 CGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTT CGGGAGTGCTGGCATGCCGTGCCCTCCCAGAGGCCCACCTT < 41bp 0.524908248893637 0.724988077927224 NA NA prediction 0.400159658067173 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808589 chr4:1808588 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_38991 0 0 1 0 2 FGFR3 chr4:1808556 3'AG 1808556 Downstream 33bp 35900 chr4 1808588 1808588 1 + C T rs555257146 1808589 + 1808569 1808609 41 CGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTT CGGGAGTGCTGGCATGCCGTGCCCTCCCAGAGGCCCACCTT < 41bp 0.524908248893637 0.724988077927224 NA NA prediction 0.400159658067173 Functional Gain - FGFR3 ENSG00000068078 CDS Human protein_coding chr4:1808589 chr4:1808588 nonsynonymous SNV 0.001 1 20 hm7G_associated_SNPs_38991 0 0 1 0 2 FGFR3 chr4:1808661 5'GT 1808661 Upstream 74bp 35901 chr2 242684135 242684135 1 + C T UCEC 242684136 + 242684116 242684156 41 GCCCCAAGGTGCTGGCCGACGGCACTGTCCTGGACTGCCTG GCCCCAAGGTGCTGGCCGATGGCACTGTCCTGGACTGCCTG < 41bp 0.531477470469286 0.731557236770713 NA NA prediction 0.400159532602854 Functional Gain - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242684136 chr2:242684135 nonsynonymous SNV . 0 20 hm7G_associated_SNPs_38992 0 0 1 0 1 D2HGDH chr2:242684124 3'AG 242684124 Downstream 12bp 35902 chr19 55107681 55107681 1 + C T CESC 55107682 + 55107662 55107702 41 CGTGGCAGACCCTTCATCTCGGTGCATCCGGGCCCCACGGT CGTGGCAGACCCTTCATCTTGGTGCATCCGGGCCCCACGGT < 41bp 0.492322845014495 0.700079141413848 NA NA prediction 0.400158282827697 Functional Gain - LILRA1 ENSG00000104974 CDS Human protein_coding chr19:55107682 chr19:55107681 nonsynonymous SNV 0.009 0 20 hm7G_associated_SNPs_38993 0 0 0 0 1 LILRA1 chr19:55107654 3'AG 55107654 Downstream 28bp 35903 chr10 72291163 72291163 1 + G A SKCM 72291164 + 72291144 72291184 41 TGAGAACCTCCAGGGCCTTGGACCCGGGGTCCGGGTGGAGA TGAGAACCTCCAGGGCCTTAGACCCGGGGTCCGGGTGGAGA < 41bp 0.485703466765772 0.700076411406998 NA NA prediction 0.400152822813996 Functional Gain - PALD1 ENSG00000107719 CDS Human protein_coding chr10:72291164 chr10:72291163 nonsynonymous SNV 0.002 0 20 hm7G_associated_SNPs_38996 0 0 0 0 1 PALD1 chr10:72291210 5'GT 72291210 Upstream 48bp 35904 chr17 9792763 9792763 1 + G A SKCM 9792764 + 9792744 9792784 41 TGCAGAGCCTGTGTCCTGGGGAAGGACTTCCGGTTCCTAGG TGCAGAGCCTGTGTCCTGGAGAAGGACTTCCGGTTCCTAGG < 41bp 0.541149476699803 0.741225246023201 NA NA prediction 0.400151538646795 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9792764 chr17:9792763 nonsynonymous SNV 0.260 0 20 hm7G_associated_SNPs_38997 0 0 0 0 1 GLP2R chr17:9792687 3'AG 9792687 Downstream 77bp 35905 chr12 4870167 4870167 1 + G A STAD 4870168 + 4870148 4870188 41 GAGATTTTGCCCTGTTCCCGGATTGCCCACCTAGAGAGACA GAGATTTTGCCCTGTTCCCAGATTGCCCACCTAGAGAGACA < 41bp 0.553191764807827 0.753262310532913 NA NA prediction 0.400141091450173 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4870168 chr12:4870167 nonsynonymous SNV 0.058 2 20 hm7G_associated_SNPs_39000 0 0 0 0 1 GALNT8 chr12:4870124 3'AG 4870124 Downstream 44bp 35906 chr4 3449863 3449863 1 + G A rs139967384 3449864 + 3449844 3449884 41 GTGTCCCACAGACGTGAGCGGCTACTCCAGCTCCCTGCGGG GTGTCCCACAGACGTGAGCAGCTACTCCAGCTCCCTGCGGG < 41bp 0.470608619628814 0.700069630845138 NA NA prediction 0.400139261690276 Functional Gain - HGFAC ENSG00000109758 CDS Human protein_coding chr4:3449864 chr4:3449863 nonsynonymous SNV 0.185 1 20 hm7G_associated_SNPs_39001 0 0 1 0 1 HGFAC chr4:3449855 3'AG 3449855 Downstream 9bp 35907 chr1 110584240 110584240 1 + C T LGG 110584241 + 110584221 110584261 41 GGCTGAGTGGAGGACCATGCGGCAGACCTTCAGAGCCGAGC GGCTGAGTGGAGGACCATGTGGCAGACCTTCAGAGCCGAGC < 41bp 0.56101093622345 0.761078787387313 NA NA prediction 0.400135702327726 Functional Gain - STRIP1 ENSG00000143093 CDS Human protein_coding chr1:110584241 chr1:110584240 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_39004 0 0 1 0 1 STRIP1 chr1:110584264 5'GT 110584264 Upstream 25bp 35908 chr2 223423092 223423092 1 + C T UCEC 223423093 + 223423073 223423113 41 TGGGTGGCGTCCTGATCACCGCACTCCTCATCGTCCTCACC TGGGTGGCGTCCTGATCACTGCACTCCTCATCGTCCTCACC < 41bp 0.541199805992822 0.741265258417179 NA NA prediction 0.400130904848716 Functional Gain - SGPP2 ENSG00000163082 CDS Human protein_coding chr2:223423093 chr2:223423092 synonymous SNV . 0 20 hm7G_associated_SNPs_39006 0 0 0 0 1 SGPP2 chr2:223423066 3'AG 223423066 Downstream 27bp 35909 chr18 76752162 76752162 1 + C T UCEC 76752163 + 76752143 76752183 41 GCGTGTGCGAGAAATGCTGCGCCGAGTTCTTCAAGTGGGCG GCGTGTGCGAGAAATGCTGTGCCGAGTTCTTCAAGTGGGCG < 41bp 0.528319447124815 0.728384485873706 NA NA prediction 0.400130077497781 Functional Gain - SALL3 ENSG00000256463 CDS Human protein_coding chr18:76752163 chr18:76752162 synonymous SNV . 0 20 hm7G_associated_SNPs_39007 0 0 0 0 1 SALL3 chr18:76752074 3'AG 76752074 Downstream 89bp 35910 chr10 122216821 122216821 1 + C T UCEC 122216822 + 122216802 122216842 41 CTGCTCCGGCCGCACCATGCGGGAGCTGGCCATTGAGATCG CTGCTCCGGCCGCACCATGTGGGAGCTGGCCATTGAGATCG < 41bp 0.499071148219109 0.700063656333343 NA NA prediction 0.400127312666686 Functional Gain - PLPP4 ENSG00000203805 CDS Human protein_coding chr10:122216822 chr10:122216821 nonsynonymous SNV 0.997 3 20 hm7G_associated_SNPs_39008 0 0 0 0 1 PLPP4 chr10:122216873 5'GT 122216873 Upstream 53bp 35911 chr7 151810452 151810452 1 + G A STAD 151810453 + 151810433 151810473 41 ATGACACACAACTCTTTGCGGCTGGCACATGTCTGGTTGGA ATGACACACAACTCTTTGCAGCTGGCACATGTCTGGTTGGA < 41bp 0.506607048118456 0.706669036658791 NA NA prediction 0.400123977080671 Functional Gain - GALNT11 ENSG00000178234 CDS Human protein_coding chr7:151810453 chr7:151810452 nonsynonymous SNV 0.982 4 20 hm7G_associated_SNPs_39010 0 0 1 0 1 GALNT11 chr7:151810483 5'GT 151810483 Upstream 32bp 35912 chr9 131475831 131475831 1 + C T STAD 131475832 + 131475812 131475852 41 ACTGGCGGCAGCTATGTGGCGTGGCCTTCCTGAGACTTGAG ACTGGCGGCAGCTATGTGGTGTGGCCTTCCTGAGACTTGAG < 41bp 0.528969486576326 0.729031426736657 NA NA prediction 0.400123880320661 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131475832 chr9:131475831 synonymous SNV . 0 20 hm7G_associated_SNPs_39011 0 0 1 0 2 PKN3 chr9:131475778 3'AG 131475778 Downstream 54bp 35913 chr9 131475831 131475831 1 + C T STAD 131475832 + 131475812 131475852 41 ACTGGCGGCAGCTATGTGGCGTGGCCTTCCTGAGACTTGAG ACTGGCGGCAGCTATGTGGTGTGGCCTTCCTGAGACTTGAG < 41bp 0.528969486576326 0.729031426736657 NA NA prediction 0.400123880320661 Functional Gain - PKN3 ENSG00000160447 CDS Human protein_coding chr9:131475832 chr9:131475831 synonymous SNV . 0 20 hm7G_associated_SNPs_39011 0 0 1 0 2 PKN3 chr9:131475921 5'GT 131475921 Upstream 91bp 35914 chr17 73728256 73728256 1 + C T CESC 73728257 + 73728237 73728277 41 ATTCCAGCAAAAAGAGGTGCGGTCAGCTCGCTGCAGCTTCA ATTCCAGCAAAAAGAGGTGTGGTCAGCTCGCTGCAGCTTCA < 41bp 0.544149260538463 0.744211023589888 NA NA prediction 0.40012352610285 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73728257 chr17:73728256 nonsynonymous SNV 0.635 2 20 hm7G_associated_SNPs_39012 0 0 0 0 2 ITGB4 chr17:73728244 3'AG 73728244 Downstream 13bp 35915 chr17 73728256 73728256 1 + C T CESC 73728257 + 73728237 73728277 41 ATTCCAGCAAAAAGAGGTGCGGTCAGCTCGCTGCAGCTTCA ATTCCAGCAAAAAGAGGTGTGGTCAGCTCGCTGCAGCTTCA < 41bp 0.544149260538463 0.744211023589888 NA NA prediction 0.40012352610285 Functional Gain - ITGB4 ENSG00000132470 CDS Human protein_coding chr17:73728257 chr17:73728256 nonsynonymous SNV 0.635 2 20 hm7G_associated_SNPs_39012 0 0 0 0 2 ITGB4 chr17:73728320 5'GT 73728320 Upstream 65bp 35916 chr15 58834792 58834792 1 + C T UCEC 58834793 + 58834773 58834813 41 GGTACAGCCTGGGTGCACACGTGTCAGGATTTGCCGGCAGT GGTACAGCCTGGGTGCACATGTGTCAGGATTTGCCGGCAGT < 41bp 0.527954730310828 0.728015344562083 NA NA prediction 0.400121228502509 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834793 chr15:58834792 synonymous SNV . 0 20 hm7G_associated_SNPs_39014 0 0 1 0 2 LIPC chr15:58834733 3'AG 58834733 Downstream 60bp 35917 chr15 58834792 58834792 1 + C T UCEC 58834793 + 58834773 58834813 41 GGTACAGCCTGGGTGCACACGTGTCAGGATTTGCCGGCAGT GGTACAGCCTGGGTGCACATGTGTCAGGATTTGCCGGCAGT < 41bp 0.527954730310828 0.728015344562083 NA NA prediction 0.400121228502509 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58834793 chr15:58834792 synonymous SNV . 0 20 hm7G_associated_SNPs_39014 0 0 1 0 2 LIPC chr15:58834850 5'GT 58834850 Upstream 59bp 35918 chr12 645389 645389 1 + C T rs142668591 645390 + 645370 645410 41 CATTCTTCCCCTAGGACCACGACATTGACCAAGGGGTGAGC CATTCTTCCCCTAGGACCATGACATTGACCAAGGGGTGAGC < 41bp 0.487703041712225 0.700059832731488 NA NA prediction 0.400119665462977 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:645390 chr12:645389 synonymous SNV . 0 20 hm7G_associated_SNPs_39015 0 0 0 0 2 B4GALNT3 chr12:645384 3'AG 645384 Downstream 6bp 35919 chr12 645389 645389 1 + C T rs142668591 645390 + 645370 645410 41 CATTCTTCCCCTAGGACCACGACATTGACCAAGGGGTGAGC CATTCTTCCCCTAGGACCATGACATTGACCAAGGGGTGAGC < 41bp 0.487703041712225 0.700059832731488 NA NA prediction 0.400119665462977 Functional Gain - B4GALNT3 ENSG00000139044 CDS Human protein_coding chr12:645390 chr12:645389 synonymous SNV . 0 20 hm7G_associated_SNPs_39015 0 0 0 0 2 B4GALNT3 chr12:645461 5'GT 645461 Upstream 73bp 35920 chr14 74428481 74428481 1 + C T COAD 74428482 + 74428462 74428502 41 TTATGAAACAGAAAGACAGCGTCACAACACTGCTCTTCTGG TTATGAAACAGAAAGACAGTGTCACAACACTGCTCTTCTGG < 41bp 0.502735443881314 0.70279431919316 NA NA prediction 0.400117750623693 Functional Gain - COQ6 ENSG00000119723 CDS Human protein_coding chr14:74428482 chr14:74428481 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_39017 0 0 1 0 1 COQ6 chr14:74428440 3'AG 74428440 Downstream 42bp 35921 chr8 39781046 39781046 1 + C T UCEC 39781047 + 39781027 39781067 41 CGGGACACTTTGCTAAAGGCGCTGTTGGAAATAGCTTCTTG CGGGACACTTTGCTAAAGGTGCTGTTGGAAATAGCTTCTTG < 41bp 0.492181198795446 0.700058215056427 NA NA prediction 0.400116430112855 Functional Gain - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39781047 chr8:39781046 nonsynonymous SNV 0.027 3 20 hm7G_associated_SNPs_39018 0 0 0 0 1 IDO1 chr8:39780988 3'AG 39780988 Downstream 59bp 35922 chr21 38103439 38103439 1 + C T rs147904157 38103440 + 38103420 38103460 41 ACGTGTTCCACCTCCGCTACGCACACCACCTCCGTGAGTAG ACGTGTTCCACCTCCGCTATGCACACCACCTCCGTGAGTAG < 41bp 0.550940802611365 0.750998998706216 NA NA prediction 0.400116392189701 Functional Gain - SIM2 ENSG00000159263 CDS Human protein_coding chr21:38103440 chr21:38103439 synonymous SNV . 0 20 hm7G_associated_SNPs_39019 0 0 0 0 1 SIM2 chr21:38103452 5'GT 38103452 Upstream 14bp 35923 chr3 183772604 183772604 1 + C T STAD 183772605 + 183772585 183772625 41 GTTTGACAGAAAGGCCTTCCGTCCATTCACCAACTACAGCA GTTTGACAGAAAGGCCTTCTGTCCATTCACCAACTACAGCA < 41bp 0.524081197153297 0.724138009862101 NA NA prediction 0.400113625417607 Functional Gain - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183772605 chr3:183772604 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_39020 0 0 0 0 2 HTR3C chr3:183772509 3'AG 183772509 Downstream 96bp 35924 chr3 183772604 183772604 1 + C T STAD 183772605 + 183772585 183772625 41 GTTTGACAGAAAGGCCTTCCGTCCATTCACCAACTACAGCA GTTTGACAGAAAGGCCTTCTGTCCATTCACCAACTACAGCA < 41bp 0.524081197153297 0.724138009862101 NA NA prediction 0.400113625417607 Functional Gain - HTR3C ENSG00000178084 CDS Human protein_coding chr3:183772605 chr3:183772604 nonsynonymous SNV 0.998 2 20 hm7G_associated_SNPs_39020 0 0 0 0 2 HTR3C chr3:183772675 5'GT 183772675 Upstream 72bp 35925 chr3 183756386 183756386 1 + C T HNSC 183756387 + 183756367 183756407 41 CAGAAGGGAAATAAGGGCCCGGGTCTCACCCCCACCCACCT CAGAAGGGAAATAAGGGCCTGGGTCTCACCCCCACCCACCT < 41bp 0.511491834332662 0.711548002584786 NA NA prediction 0.400112336504246 Functional Gain - HTR3D ENSG00000186090 CDS Human protein_coding chr3:183756387 chr3:183756386 nonsynonymous SNV 0.064 0 20 hm7G_associated_SNPs_39021 0 0 0 0 1 HTR3D chr3:183756412 5'GT 183756412 Upstream 27bp 35926 chr11 116701533 116701533 1 + G T LUAD 116701534 + 116701514 116701554 41 CCTTCTCAGCTTCATGCAGGGTTACATGAAGCACGCCACCA CCTTCTCAGCTTCATGCAGTGTTACATGAAGCACGCCACCA < 41bp 0.709272235462069 0.909326983992496 NA NA prediction 0.400109497060855 Functional Gain - APOC3 ENSG00000110245 CDS Human protein_coding chr11:116701534 chr11:116701533 nonsynonymous SNV 0.168 3 20 hm7G_associated_SNPs_39023 0 0 1 0 2 APOC3 chr11:116701489 3'AG 116701489 Downstream 45bp 35927 chr11 116701533 116701533 1 + G T LUAD 116701534 + 116701514 116701554 41 CCTTCTCAGCTTCATGCAGGGTTACATGAAGCACGCCACCA CCTTCTCAGCTTCATGCAGTGTTACATGAAGCACGCCACCA < 41bp 0.709272235462069 0.909326983992496 NA NA prediction 0.400109497060855 Functional Gain - APOC3 ENSG00000110245 CDS Human protein_coding chr11:116701534 chr11:116701533 nonsynonymous SNV 0.168 3 20 hm7G_associated_SNPs_39023 0 0 1 0 2 APOC3 chr11:116701612 5'GT 116701612 Upstream 80bp 35928 chrX 49851436 49851436 1 + C T UCEC 49851437 + 49851417 49851457 41 GGTGAACTGCCTGACAGACCGGCTGGCGTGGGAGTCTACAG GGTGAACTGCCTGACAGACTGGCTGGCGTGGGAGTCTACAG < 41bp 0.535958405675346 0.736012764909477 NA NA prediction 0.400108718468262 Functional Gain - CLCN5 ENSG00000171365 CDS Human protein_coding chrX:49851437 chrX:49851436 nonsynonymous SNV 0.984 3 20 hm7G_associated_SNPs_39024 0 0 1 0 1 CLCN5 chrX:49851527 5'GT 49851527 Upstream 92bp 35929 chr9 98728904 98728904 1 + G T GBM 98728905 + 98728885 98728925 41 ATATTTTGAAGCAGTTCAAGGATCTAAAGAGCATCAAGGAG ATATTTTGAAGCAGTTCAATGATCTAAAGAGCATCAAGGAG < 41bp 0.693158701397903 0.893211925510858 NA NA prediction 0.400106448225911 Functional Gain - ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98728905 chr9:98728904 stopgain 1.000 1 20 hm7G_associated_SNPs_39025 0 0 1 0 2 ERCC6L2 chr9:98728844 3'AG 98728844 Downstream 61bp 35930 chr9 98728904 98728904 1 + G T GBM 98728905 + 98728885 98728925 41 ATATTTTGAAGCAGTTCAAGGATCTAAAGAGCATCAAGGAG ATATTTTGAAGCAGTTCAATGATCTAAAGAGCATCAAGGAG < 41bp 0.693158701397903 0.893211925510858 NA NA prediction 0.400106448225911 Functional Gain - ERCC6L2 ENSG00000182150 CDS Human protein_coding chr9:98728905 chr9:98728904 stopgain 1.000 1 20 hm7G_associated_SNPs_39025 0 0 1 0 2 ERCC6L2 chr9:98728996 5'GT 98728996 Upstream 93bp 35931 chrX 129040194 129040194 1 + C T UCEC 129040195 + 129040175 129040215 41 CTGGCTGCTGAAATGACTGCGAACCGGCTTGCAGAGAGGTG CTGGCTGCTGAAATGACTGTGAACCGGCTTGCAGAGAGGTG < 41bp 0.51951104789094 0.719563160118783 NA NA prediction 0.400104224455686 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129040195 chrX:129040194 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_39027 0 0 1 0 1 UTP14A chrX:129040212 5'GT 129040212 Upstream 19bp 35932 chr10 82269209 82269209 1 + C T UCEC 82269210 + 82269190 82269230 41 TCGATCTGCAAAACCTCATCGACTCCCTTCAGAAAGCTGTA TCGATCTGCAAAACCTCATTGACTCCCTTCAGAAAGCTGTA < 41bp 0.48386332799189 0.700051925347527 NA NA prediction 0.400103850695054 Functional Gain - TSPAN14 ENSG00000108219 CDS Human protein_coding chr10:82269210 chr10:82269209 synonymous SNV . 0 20 hm7G_associated_SNPs_39028 0 0 1 0 1 TSPAN14 chr10:82269227 5'GT 82269227 Upstream 19bp 35933 chr16 3100498 3100498 1 + C T LUAD 3100499 + 3100479 3100519 41 CTGGGGAGCACCCCATCTCCGGGGACACTCACTTTGACGAT CTGGGGAGCACCCCATCTCTGGGGACACTCACTTTGACGAT < 41bp 0.55218691648371 0.75223479702296 NA NA prediction 0.400095761078501 Functional Gain - MMP25 ENSG00000008516 CDS Human protein_coding chr16:3100499 chr16:3100498 synonymous SNV . 0 20 hm7G_associated_SNPs_39030 0 0 0 0 1 MMP25 chr16:3100547 5'GT 3100547 Upstream 50bp 35934 chr11 992664 992664 1 + C T COAD 992665 + 992645 992685 41 GGGACGACGTGCAGGGCTACGCGGCCAAGACTGTGTTCGAG GGGACGACGTGCAGGGCTATGCGGCCAAGACTGTGTTCGAG < 41bp 0.55168669368462 0.751733807594642 NA NA prediction 0.400094227820045 Functional Gain - AP2A2 ENSG00000183020 CDS Human protein_coding chr11:992665 chr11:992664 synonymous SNV . 0 20 hm7G_associated_SNPs_39031 0 0 1 0 1 AP2A2 chr11:992685 5'GT 992685 Upstream 22bp 35935 chr7 55240694 55240694 1 + C T STAD 55240695 + 55240675 55240715 41 GGCCTAAGATCCCGTCCATCGCCACTGGGATGGTGGGGGCC GGCCTAAGATCCCGTCCATTGCCACTGGGATGGTGGGGGCC < 41bp 0.498408263056465 0.700041463481912 NA NA prediction 0.400082926963825 Functional Gain - EGFR ENSG00000146648 CDS Human protein_coding chr7:55240695 chr7:55240694 synonymous SNV . 0 20 hm7G_associated_SNPs_39033 0 0 1 0 1 EGFR chr7:55240676 3'AG 55240676 Downstream 19bp 35936 chr5 141019146 141019146 1 + C T COAD 141019147 + 141019127 141019167 41 CAAGAGGCCTCCACTTGTCCGTCAGGGACGCTCCAAGGAAG CAAGAGGCCTCCACTTGTCTGTCAGGGACGCTCCAAGGAAG < 41bp 0.498555659492026 0.700040609262423 NA NA prediction 0.400081218524846 Functional Gain - RELL2 ENSG00000164620 CDS Human protein_coding chr5:141019147 chr5:141019146 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_39034 0 0 1 0 1 RELL2 chr5:141019216 5'GT 141019216 Upstream 71bp 35937 chr16 28883644 28883644 1 + C T HNSC 28883645 + 28883625 28883665 41 CTGGCGGCACTGGCTCCCACGGTGTCTTCCTGGTGCGCCAG CTGGCGGCACTGGCTCCCATGGTGTCTTCCTGGTGCGCCAG < 41bp 0.560873291056715 0.760913483531274 NA NA prediction 0.400080384949118 Functional Gain - SH2B1 ENSG00000178188 CDS Human protein_coding chr16:28883645 chr16:28883644 synonymous SNV . 0 20 hm7G_associated_SNPs_39035 0 0 1 0 1 SH2B1 chr16:28883722 5'GT 28883722 Upstream 79bp 35938 chr11 123485465 123485465 1 + C T UCEC 123485466 + 123485446 123485486 41 CCCACAGGTTCCACACAGACGCGGCATATCCCGGAGGACAC CCCACAGGTTCCACACAGATGCGGCATATCCCGGAGGACAC < 41bp 0.556722151669997 0.756761548642973 NA NA prediction 0.400078793945953 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123485466 chr11:123485465 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_39036 0 0 0 0 2 GRAMD1B chr11:123485453 3'AG 123485453 Downstream 13bp 35939 chr11 123485465 123485465 1 + C T UCEC 123485466 + 123485446 123485486 41 CCCACAGGTTCCACACAGACGCGGCATATCCCGGAGGACAC CCCACAGGTTCCACACAGATGCGGCATATCCCGGAGGACAC < 41bp 0.556722151669997 0.756761548642973 NA NA prediction 0.400078793945953 Functional Gain - GRAMD1B ENSG00000023171 CDS Human protein_coding chr11:123485466 chr11:123485465 nonsynonymous SNV 0.995 4 20 hm7G_associated_SNPs_39036 0 0 0 0 2 GRAMD1B chr11:123485543 5'GT 123485543 Upstream 79bp 35940 chr11 611718 611718 1 + C T COAD 611719 + 611699 611739 41 GGACAAGTACAGGCACATGCGCAGGCACAAGAAACCAGAGG GGACAAGTACAGGCACATGTGCAGGCACAAGAAACCAGAGG < 41bp 0.505559629654947 0.705598985342428 NA NA prediction 0.400078711374963 Functional Gain - PHRF1 ENSG00000070047 CDS Human protein_coding chr11:611719 chr11:611718 nonsynonymous SNV 0.730 3 20 hm7G_associated_SNPs_39037 0 0 0 0 1 PHRF1 chr11:611634 3'AG 611634 Downstream 85bp 35941 chr12 121435391 121435391 1 + C T SKCM 121435392 + 121435372 121435412 41 CACCCCTCCTACCAGCAGCCGCTCATGCCACCTGTGCAGAG CACCCCTCCTACCAGCAGCTGCTCATGCCACCTGTGCAGAG < 41bp 0.55069855674737 0.750737496404925 NA NA prediction 0.400077879315111 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121435392 chr12:121435391 nonsynonymous SNV 0.564 5 20 hm7G_associated_SNPs_39038 1 0 1 0 2 HNF1A chr12:121435294 3'AG 121435294 Downstream 98bp 35942 chr12 121435391 121435391 1 + C T SKCM 121435392 + 121435372 121435412 41 CACCCCTCCTACCAGCAGCCGCTCATGCCACCTGTGCAGAG CACCCCTCCTACCAGCAGCTGCTCATGCCACCTGTGCAGAG < 41bp 0.55069855674737 0.750737496404925 NA NA prediction 0.400077879315111 Functional Gain - HNF1A ENSG00000135100 CDS Human protein_coding chr12:121435392 chr12:121435391 nonsynonymous SNV 0.564 5 20 hm7G_associated_SNPs_39038 1 0 1 0 2 HNF1A chr12:121435468 5'GT 121435468 Upstream 78bp 35943 chr17 76073379 76073379 1 + C T COAD 76073380 + 76073360 76073400 41 CCCTGGGTGGGATTGCCTCCGGGCTGGGCATGCAAAACTTG CCCTGGGTGGGATTGCCTCTGGGCTGGGCATGCAAAACTTG < 41bp 0.482936378027333 0.700038598222191 NA NA prediction 0.400077196444382 Functional Gain - TNRC6C ENSG00000078687 CDS Human protein_coding chr17:76073380 chr17:76073379 synonymous SNV . 0 20 hm7G_associated_SNPs_39039 0 0 1 0 1 TNRC6C chr17:76073415 5'GT 76073415 Upstream 37bp 35944 chr2 103378756 103378756 1 + C T COAD 103378757 + 103378737 103378777 41 TTTTTGGTGGCTTTTGGATCGGATTATTGGCTTCTTGCAAC TTTTTGGTGGCTTTTGGATTGGATTATTGGCTTCTTGCAAC < 41bp 0.525201488324802 0.725239205435375 NA NA prediction 0.400075434221147 Functional Gain - TMEM182 ENSG00000170417 CDS Human protein_coding chr2:103378757 chr2:103378756 nonsynonymous SNV 1.000 2 20 hm7G_associated_SNPs_39040 0 0 0 0 1 TMEM182 chr2:103378808 5'GT 103378808 Upstream 53bp 35945 chr20 61960973 61960973 1 + G A SKCM 61960974 + 61960954 61960994 41 GGTCAGATGGGCAGCCCTGGGCAGCAGGGGGCTAGCACCCA GGTCAGATGGGCAGCCCTGAGCAGCAGGGGGCTAGCACCCA < 41bp 0.577126411677022 0.777162649176167 NA NA prediction 0.40007247499829 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61960974 chr20:61960973 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_39041 0 0 0 0 2 COL20A1 chr20:61960937 3'AG 61960937 Downstream 37bp 35946 chr20 61960973 61960973 1 + G A SKCM 61960974 + 61960954 61960994 41 GGTCAGATGGGCAGCCCTGGGCAGCAGGGGGCTAGCACCCA GGTCAGATGGGCAGCCCTGAGCAGCAGGGGGCTAGCACCCA < 41bp 0.577126411677022 0.777162649176167 NA NA prediction 0.40007247499829 Functional Gain - COL20A1 ENSG00000101203 CDS Human protein_coding chr20:61960974 chr20:61960973 nonsynonymous SNV 0.006 1 20 hm7G_associated_SNPs_39041 0 0 0 0 2 COL20A1 chr20:61961013 5'GT 61961013 Upstream 41bp 35947 chr11 12904671 12904671 1 + C T rs140310944 12904672 + 12904652 12904692 41 CAGCAGCGAGACCCAGACTCGGTGAGTGTGCCCAGAGAGGT CAGCAGCGAGACCCAGACTTGGTGAGTGTGCCCAGAGAGGT < 41bp 0.559813874692999 0.759847934638251 NA NA prediction 0.400068119890504 Functional Gain - TEAD1 ENSG00000187079 CDS Human protein_coding chr11:12904672 chr11:12904671 nonsynonymous SNV 1.000 1 20 hm7G_associated_SNPs_39044 0 0 1 0 1 TEAD1 chr11:12904672 5'GT 12904672 Upstream 2bp 35948 chr21 42813764 42813764 1 + G A BLCA 42813765 + 42813745 42813785 41 TCAAGTGCCGGGGCCAGCAGGAGATCCAGGACCAGCTGAGC TCAAGTGCCGGGGCCAGCAAGAGATCCAGGACCAGCTGAGC < 41bp 0.555209791336541 0.755241805404441 NA NA prediction 0.4000640281358 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42813765 chr21:42813764 synonymous SNV . 0 20 hm7G_associated_SNPs_39046 0 0 0 0 1 MX1 chr21:42813841 5'GT 42813841 Upstream 78bp 35949 chr17 16665773 16665773 1 + C T UCEC 16665774 + 16665754 16665794 41 AAGCCGACTTTAATAAAACCGAATTGGAAAGATATAAGGAA AAGCCGACTTTAATAAAACTGAATTGGAAAGATATAAGGAA < 41bp 0.534290431743561 0.734322303022841 NA NA prediction 0.400063742558558 Functional Gain - CCDC144A ENSG00000170160;ENSG00000266302 CDS Human other chr17:16665774 chr17:16665773 synonymous SNV . 0 20 hm7G_associated_SNPs_39047 0 0 0 0 1 CCDC144A chr17:16665847 5'GT 16665847 Upstream 75bp 35950 chr19 38631868 38631868 1 + C T UCEC 38631869 + 38631849 38631889 41 AATACCTCGGAGCCCAAGACGGAGCAGGAAAGCATCACTCC AATACCTCGGAGCCCAAGATGGAGCAGGAAAGCATCACTCC < 41bp 0.532509019067193 0.732539697730806 NA NA prediction 0.400061357327227 Functional Gain - SIPA1L3 ENSG00000105738 CDS Human protein_coding chr19:38631869 chr19:38631868 nonsynonymous SNV 0.862 0 20 hm7G_associated_SNPs_39049 0 0 1 0 1 SIPA1L3 chr19:38631824 3'AG 38631824 Downstream 45bp 35951 chr16 31435264 31435264 1 + C T COAD 31435265 + 31435245 31435285 41 TGAAGGGCAATCTCAGTTTCGGCTGGGTCCGCGAGGTGTGT TGAAGGGCAATCTCAGTTTTGGCTGGGTCCGCGAGGTGTGT < 41bp 0.528675722774909 0.728705654774352 NA NA prediction 0.400059863998885 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31435265 chr16:31435264 synonymous SNV . 0 20 hm7G_associated_SNPs_39050 0 0 0 0 2 ITGAD chr16:31435166 3'AG 31435166 Downstream 99bp 35952 chr16 31435264 31435264 1 + C T COAD 31435265 + 31435245 31435285 41 TGAAGGGCAATCTCAGTTTCGGCTGGGTCCGCGAGGTGTGT TGAAGGGCAATCTCAGTTTTGGCTGGGTCCGCGAGGTGTGT < 41bp 0.528675722774909 0.728705654774352 NA NA prediction 0.400059863998885 Functional Gain - ITGAD ENSG00000156886 CDS Human protein_coding chr16:31435265 chr16:31435264 synonymous SNV . 0 20 hm7G_associated_SNPs_39050 0 0 0 0 2 ITGAD chr16:31435279 5'GT 31435279 Upstream 16bp 35953 chrX 153001908 153001908 1 + C T UCEC 153001909 + 153001889 153001929 41 GAGCTAGAGGACGCTCAGGCGGGGTCTGGGACCATAGGCCG GAGCTAGAGGACGCTCAGGTGGGGTCTGGGACCATAGGCCG < 41bp 0.541955066567481 0.741984808605651 NA NA prediction 0.40005948407634 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153001909 chrX:153001908 nonsynonymous SNV 0.165 1 20 hm7G_associated_SNPs_39051 0 0 1 0 1 ABCD1 chrX:153001967 5'GT 153001967 Upstream 60bp 35954 chr1 21902284 21902284 1 + G A SKCM 21902285 + 21902265 21902305 41 AGCAGGCCCTGCATGAGGCGGTGGAGATGGACCGGGCCATC AGCAGGCCCTGCATGAGGCAGTGGAGATGGACCGGGCCATC < 41bp 0.536908582715671 0.736936385301106 NA NA prediction 0.400055605170869 Functional Gain - ALPL ENSG00000162551 CDS Human protein_coding chr1:21902285 chr1:21902284 synonymous SNV . 0 20 hm7G_associated_SNPs_39052 0 0 0 0 1 ALPL chr1:21902226 3'AG 21902226 Downstream 59bp 35955 chr2 220497045 220497045 1 + C T ESCA 220497046 + 220497026 220497066 41 GAGCCCCACTGGCGGGAGACGGCCCGCTGGATCAAGTTTGA GAGCCCCACTGGCGGGAGATGGCCCGCTGGATCAAGTTTGA < 41bp 0.521966943683139 0.721993078313919 NA NA prediction 0.40005226926156 Functional Gain - SLC4A3 ENSG00000114923 CDS Human protein_coding chr2:220497046 chr2:220497045 nonsynonymous SNV 0.968 5 20 hm7G_associated_SNPs_39053 0 0 0 0 1 SLC4A3 chr2:220496984 3'AG 220496984 Downstream 62bp 35956 chr4 111464012 111464012 1 + C T COAD 111464013 + 111463993 111464033 41 GAAGTAGCAACTTGGGACTCGATAGCTACAGCGCTCTCCTT GAAGTAGCAACTTGGGACTTGATAGCTACAGCGCTCTCCTT < 41bp 0.49508984439052 0.700025237149594 NA NA prediction 0.400050474299187 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111464013 chr4:111464012 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_39054 0 0 0 0 1 ENPEP chr4:111464043 5'GT 111464043 Upstream 32bp 35957 chr10 88939898 88939898 1 + C T rs77534648 88939899 + 88939879 88939919 41 ACAGCATCTCAGAAGATAGCGCTAAATGCTCACAGTTCTCT ACAGCATCTCAGAAGATAGTGCTAAATGCTCACAGTTCTCT < 41bp 0.540035279381685 0.740059577710797 NA NA prediction 0.400048596658226 Functional Gain - FAM35A ENSG00000122376 CDS Human protein_coding chr10:88939899 chr10:88939898 nonsynonymous SNV 0.853 0 20 hm7G_associated_SNPs_39056 0 0 1 0 1 FAM35A chr10:88939832 3'AG 88939832 Downstream 67bp 35958 chr3 136729020 136729020 1 + G A UCEC 136729021 + 136729001 136729041 41 AGGTGGATGCCTGTGCCACGGCTGTGATGTCTCCTGAGGAA AGGTGGATGCCTGTGCCACAGCTGTGATGTCTCCTGAGGAA < 41bp 0.494788519003355 0.700024146886127 NA NA prediction 0.400048293772254 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136729021 chr3:136729020 synonymous SNV . 0 20 hm7G_associated_SNPs_39057 0 0 1 0 1 IL20RB chr3:136728955 3'AG 136728955 Downstream 66bp 35959 chr17 35787058 35787058 1 + C T UCEC 35787059 + 35787039 35787079 41 TTCTTTGCAGTGTTTCACTCGAGGCTTTGAGTACAAGAAAC TTCTTTGCAGTGTTTCACTTGAGGCTTTGAGTACAAGAAAC < 41bp 0.491590661245047 0.700023179206439 NA NA prediction 0.400046358412879 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35787059 chr17:35787058 stopgain 1.000 1 20 hm7G_associated_SNPs_39059 0 0 1 0 1 TADA2A chr17:35787108 5'GT 35787108 Upstream 51bp 35960 chr11 128680444 128680444 1 + G A BLCA 128680445 + 128680425 128680465 41 ACCTGGGAGGGGACCAACGGGGAGTTCAAAATGACGGACCC ACCTGGGAGGGGACCAACGAGGAGTTCAAAATGACGGACCC < 41bp 0.541899688783582 0.741921832300115 NA NA prediction 0.400044287033066 Functional Gain - FLI1 ENSG00000151702 CDS Human protein_coding chr11:128680445 chr11:128680444 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_39063 0 0 0 0 1 FLI1 chr11:128680354 3'AG 128680354 Downstream 91bp 35961 chr20 21213397 21213397 1 + C T rs34011504 21213398 + 21213378 21213418 41 ATATTGGCAGCGGTGCATTCGAGACAAAGACAGCTAACAAA ATATTGGCAGCGGTGCATTTGAGACAAAGACAGCTAACAAA < 41bp 0.529884203545131 0.729905162566263 NA NA prediction 0.400041918042265 Functional Gain - KIZ ENSG00000088970 ncRNA_exonic Human protein_coding chr20:21213398 chr20:21213397 . . 0 20 hm7G_associated_SNPs_39064 0 0 1 0 2 KIZ chr20:21213372 3'AG 21213372 Downstream 26bp 35962 chr20 21213397 21213397 1 + C T rs34011504 21213398 + 21213378 21213418 41 ATATTGGCAGCGGTGCATTCGAGACAAAGACAGCTAACAAA ATATTGGCAGCGGTGCATTTGAGACAAAGACAGCTAACAAA < 41bp 0.529884203545131 0.729905162566263 NA NA prediction 0.400041918042265 Functional Gain - KIZ ENSG00000088970 ncRNA_exonic Human protein_coding chr20:21213398 chr20:21213397 . . 0 20 hm7G_associated_SNPs_39064 0 0 1 0 2 KIZ chr20:21213468 5'GT 21213468 Upstream 72bp 35963 chr17 80540798 80540798 1 + C T COAD 80540799 + 80540779 80540819 41 TTTAGAACCCCTCTGGGACCGCTCTCTTCTAGGTAAGGAAA TTTAGAACCCCTCTGGGACTGCTCTCTTCTAGGTAAGGAAA < 41bp 0.542799333360622 0.742818115973471 NA NA prediction 0.400037565225697 Functional Gain - FOXK2 ENSG00000141568 CDS Human protein_coding chr17:80540799 chr17:80540798 nonsynonymous SNV 0.993 5 20 hm7G_associated_SNPs_39065 0 0 1 0 1 FOXK2 chr17:80540810 5'GT 80540810 Upstream 13bp 35964 chr2 136528268 136528268 1 + G T COAD 136528269 + 136528249 136528289 41 AGAGAGAAAGCAGAAGATAGGGCAGCTCGAGAACGTATAAA AGAGAGAAAGCAGAAGATATGGCAGCTCGAGAACGTATAAA < 41bp 0.700855732516147 0.900872823112912 NA NA prediction 0.40003418119353 Functional Gain - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136528269 chr2:136528268 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_39066 0 0 1 0 1 UBXN4 chr2:136528305 5'GT 136528305 Upstream 38bp 35965 chr7 927103 927103 1 + G A SKCM 927104 + 927084 927124 41 TGGTCCAGTGGGGGCTCCGGGAAGCTGGGCCACCCCCGGCT TGGTCCAGTGGGGGCTCCGAGAAGCTGGGCCACCCCCGGCT < 41bp 0.576263553970645 0.776279588977725 NA NA prediction 0.40003207001416 Functional Gain - GET4 ENSG00000239857 CDS Human protein_coding chr7:927104 chr7:927103 nonsynonymous SNV 0.780 1 20 hm7G_associated_SNPs_39067 0 0 1 0 2 GET4 chr7:927007 3'AG 927007 Downstream 97bp 35966 chr7 927103 927103 1 + G A SKCM 927104 + 927084 927124 41 TGGTCCAGTGGGGGCTCCGGGAAGCTGGGCCACCCCCGGCT TGGTCCAGTGGGGGCTCCGAGAAGCTGGGCCACCCCCGGCT < 41bp 0.576263553970645 0.776279588977725 NA NA prediction 0.40003207001416 Functional Gain - GET4 ENSG00000239857 CDS Human protein_coding chr7:927104 chr7:927103 nonsynonymous SNV 0.780 1 20 hm7G_associated_SNPs_39067 0 0 1 0 2 GET4 chr7:927156 5'GT 927156 Upstream 54bp 35967 chr11 71850647 71850647 1 + G A UCEC 71850648 + 71850628 71850668 41 CAGGGATTAATGAGTGTCCGGCCGGGGCCCTCTGCAGCACC CAGGGATTAATGAGTGTCCAGCCGGGGCCCTCTGCAGCACC < 41bp 0.58045400660828 0.780469670882745 NA NA prediction 0.400031328548931 Functional Gain - FOLR3 ENSG00000110203 CDS Human protein_coding chr11:71850648 chr11:71850647 synonymous SNV . 0 20 hm7G_associated_SNPs_39068 0 0 0 0 1 FOLR3 chr11:71850631 3'AG 71850631 Downstream 17bp 35968 chr22 50960428 50960428 1 + C T rs143010144 50960429 + 50960409 50960449 41 TCACAGATGCAGACCATGCCGACAGCAGGCGGCTTCGGCGA TCACAGATGCAGACCATGCTGACAGCAGGCGGCTTCGGCGA < 41bp 0.528181173390061 0.728195489621306 NA NA prediction 0.40002863246249 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960429 chr22:50960428 synonymous SNV . 0 20 hm7G_associated_SNPs_39069 0 0 1 0 2 NCAPH2 chr22:50960415 3'AG 50960415 Downstream 14bp 35969 chr22 50960428 50960428 1 + C T rs143010144 50960429 + 50960409 50960449 41 TCACAGATGCAGACCATGCCGACAGCAGGCGGCTTCGGCGA TCACAGATGCAGACCATGCTGACAGCAGGCGGCTTCGGCGA < 41bp 0.528181173390061 0.728195489621306 NA NA prediction 0.40002863246249 Functional Gain - NCAPH2 ENSG00000025770 CDS Human protein_coding chr22:50960429 chr22:50960428 synonymous SNV . 0 20 hm7G_associated_SNPs_39069 0 0 1 0 2 NCAPH2 chr22:50960468 5'GT 50960468 Upstream 41bp 35970 chr11 95561037 95561037 1 + C T READ 95561038 + 95561018 95561058 41 TAAAGCTTTGTGCAATGATCGAGTCATCAACAGTATTCCTT TAAAGCTTTGTGCAATGATTGAGTCATCAACAGTATTCCTT < 41bp 0.530086193616496 0.730100348133681 NA NA prediction 0.400028309034369 Functional Gain - CEP57 ENSG00000166037 CDS Human protein_coding chr11:95561038 chr11:95561037 stopgain 0.491 1 20 hm7G_associated_SNPs_39070 0 0 1 0 1 CEP57 chr11:95560950 3'AG 95560950 Downstream 88bp 35971 chr16 1555591 1555591 1 + C T rs74002291 1555592 + 1555572 1555612 41 GATCAGAAGCAAGACCCAGCGGCTCTCCAAGGTTAGTGGCG GATCAGAAGCAAGACCCAGTGGCTCTCCAAGGTTAGTGGCG < 41bp 0.535444870174655 0.735458998127396 NA NA prediction 0.400028255905482 Functional Gain - TELO2 ENSG00000100726 CDS Human protein_coding chr16:1555592 chr16:1555591 nonsynonymous SNV 0.898 4 20 hm7G_associated_SNPs_39071 0 0 0 0 1 TELO2 chr16:1555602 5'GT 1555602 Upstream 12bp 35972 chr14 59806864 59806864 1 + C T COAD 59806865 + 59806845 59806885 41 GCTTTCGGTGATTGATGGTCGGAGAGCTCAGAATTGCAACA GCTTTCGGTGATTGATGGTTGGAGAGCTCAGAATTGCAACA < 41bp 0.483735111433593 0.70001085994305 NA NA prediction 0.400021719886101 Functional Gain - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59806865 chr14:59806864 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_39074 0 0 0 0 2 DAAM1 chr14:59806792 3'AG 59806792 Downstream 73bp 35973 chr14 59806864 59806864 1 + C T COAD 59806865 + 59806845 59806885 41 GCTTTCGGTGATTGATGGTCGGAGAGCTCAGAATTGCAACA GCTTTCGGTGATTGATGGTTGGAGAGCTCAGAATTGCAACA < 41bp 0.483735111433593 0.70001085994305 NA NA prediction 0.400021719886101 Functional Gain - DAAM1 ENSG00000100592 CDS Human protein_coding chr14:59806865 chr14:59806864 nonsynonymous SNV 1.000 4 20 hm7G_associated_SNPs_39074 0 0 0 0 2 DAAM1 chr14:59806898 5'GT 59806898 Upstream 35bp 35974 chr1 220280417 220280417 1 + C T UCEC 220280418 + 220280398 220280438 41 TATAGGATTGTCTAGTGGACGAAGATGGAGTTTTCACAGAT TATAGGATTGTCTAGTGGATGAAGATGGAGTTTTCACAGAT < 41bp 0.528894372655363 0.728904620529358 NA NA prediction 0.40002049574799 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220280418 chr1:220280417 synonymous SNV . 0 20 hm7G_associated_SNPs_39076 0 0 1 0 2 IARS2 chr1:220280403 3'AG 220280403 Downstream 15bp 35975 chr1 220280417 220280417 1 + C T UCEC 220280418 + 220280398 220280438 41 TATAGGATTGTCTAGTGGACGAAGATGGAGTTTTCACAGAT TATAGGATTGTCTAGTGGATGAAGATGGAGTTTTCACAGAT < 41bp 0.528894372655363 0.728904620529358 NA NA prediction 0.40002049574799 Functional Gain - IARS2 ENSG00000067704 CDS Human protein_coding chr1:220280418 chr1:220280417 synonymous SNV . 0 20 hm7G_associated_SNPs_39076 0 0 1 0 2 IARS2 chr1:220280493 5'GT 220280493 Upstream 77bp 35976 chr9 133507350 133507350 1 + C T COAD 133507351 + 133507331 133507371 41 CCTTTCCTCCAAGGAGCTCCGGGTGCTTCCCAAACATGGCT CCTTTCCTCCAAGGAGCTCTGGGTGCTTCCCAAACATGGCT < 41bp 0.55462351732502 0.754633199964795 NA NA prediction 0.40001936527955 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507351 chr9:133507350 synonymous SNV . 0 20 hm7G_associated_SNPs_39078 0 0 1 0 2 FUBP3 chr9:133507329 3'AG 133507329 Downstream 22bp 35977 chr9 133507350 133507350 1 + C T COAD 133507351 + 133507331 133507371 41 CCTTTCCTCCAAGGAGCTCCGGGTGCTTCCCAAACATGGCT CCTTTCCTCCAAGGAGCTCTGGGTGCTTCCCAAACATGGCT < 41bp 0.55462351732502 0.754633199964795 NA NA prediction 0.40001936527955 Functional Gain - FUBP3 ENSG00000107164 CDS Human protein_coding chr9:133507351 chr9:133507350 synonymous SNV . 0 20 hm7G_associated_SNPs_39078 0 0 1 0 2 FUBP3 chr9:133507409 5'GT 133507409 Upstream 60bp 35978 chr11 36248640 36248640 1 + G A COAD 36248641 + 36248621 36248661 41 CTTGGGTTTCTCAGAACCCGGCAGTGGGCAGGTGTTTGTGA CTTGGGTTTCTCAGAACCCAGCAGTGGGCAGGTGTTTGTGA < 41bp 0.497449173933551 0.700009477290417 NA NA prediction 0.400018954580833 Functional Gain - LDLRAD3 ENSG00000179241 CDS Human protein_coding chr11:36248641 chr11:36248640 nonsynonymous SNV 0.994 3 20 hm7G_associated_SNPs_39079 0 0 0 0 1 LDLRAD3 chr11:36248635 3'AG 36248635 Downstream 6bp 35979 chr19 50148328 50148328 1 + G A rs114682662 50148329 + 50148309 50148349 41 GGAAGACAGAGGAGTCGGGGGAGGATCGGGGCGATGGTCCG GGAAGACAGAGGAGTCGGGAGAGGATCGGGGCGATGGTCCG < 41bp 0.540981312647445 0.740990456415845 NA NA prediction 0.400018287536801 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50148329 chr19:50148328 synonymous SNV . 0 20 hm7G_associated_SNPs_39080 0 0 1 0 2 SCAF1 chr19:50148278 3'AG 50148278 Downstream 51bp 35980 chr19 50148328 50148328 1 + G A rs114682662 50148329 + 50148309 50148349 41 GGAAGACAGAGGAGTCGGGGGAGGATCGGGGCGATGGTCCG GGAAGACAGAGGAGTCGGGAGAGGATCGGGGCGATGGTCCG < 41bp 0.540981312647445 0.740990456415845 NA NA prediction 0.400018287536801 Functional Gain - SCAF1 ENSG00000126461 CDS Human protein_coding chr19:50148329 chr19:50148328 synonymous SNV . 0 20 hm7G_associated_SNPs_39080 0 0 1 0 2 SCAF1 chr19:50148391 5'GT 50148391 Upstream 64bp 35981 chr22 19709380 19709380 1 + C T PAAD 19709381 + 19709361 19709401 41 TTGCGACTTCGTGAAGCTGCGCAACATGCTCATCCGCACGC TTGCGACTTCGTGAAGCTGTGCAACATGCTCATCCGCACGC < 41bp 0.538089765714055 0.738098684395499 NA NA prediction 0.400017837362888 Functional Gain - SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19709381 chr22:19709380 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_39081 0 0 1 0 2 SEPT5 chr22:19709345 3'AG 19709345 Downstream 36bp 35982 chr22 19709380 19709380 1 + C T PAAD 19709381 + 19709361 19709401 41 TTGCGACTTCGTGAAGCTGCGCAACATGCTCATCCGCACGC TTGCGACTTCGTGAAGCTGTGCAACATGCTCATCCGCACGC < 41bp 0.538089765714055 0.738098684395499 NA NA prediction 0.400017837362888 Functional Gain - SEPT5 ENSG00000184702 CDS Human protein_coding chr22:19709381 chr22:19709380 nonsynonymous SNV 0.998 4 20 hm7G_associated_SNPs_39081 0 0 1 0 2 SEPT5 chr22:19709356 3'AG 19709356 Downstream 25bp 35983 chr2 98355918 98355918 1 + G A PRAD 98355919 + 98355899 98355939 41 CTGGCCAGCAAGGTGGAAGGGCCCCCAGGCAGCACACAGAA CTGGCCAGCAAGGTGGAAGAGCCCCCAGGCAGCACACAGAA < 41bp 0.570379412569379 0.770386591418304 NA NA prediction 0.400014357697849 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98355919 chr2:98355918 nonsynonymous SNV 0.000 0 20 hm7G_associated_SNPs_39084 0 0 0 0 1 ZAP70 chr2:98355838 3'AG 98355838 Downstream 81bp 35984 chr6 74207587 74207587 1 + C T UCEC 74207588 + 74207568 74207608 41 GTCTTTGTCCCATGAAGTTCGAGAGAAACTACATTTTAGTC GTCTTTGTCCCATGAAGTTTGAGAGAAACTACATTTTAGTC < 41bp 0.515537950114068 0.715544105182541 NA NA prediction 0.400012310136945 Functional Gain - MTO1 ENSG00000135297 CDS Human protein_coding chr6:74207588 chr6:74207587 stopgain 0.993 1 20 hm7G_associated_SNPs_39086 0 0 1 0 1 MTO1 chr6:74207619 5'GT 74207619 Upstream 33bp 35985 chr3 137742517 137742517 1 + C T COAD 137742518 + 137742498 137742538 41 AGCCATGCTGCAGGCAGTGCGAGCCCTGATGATCGTAGGCA AGCCATGCTGCAGGCAGTGTGAGCCCTGATGATCGTAGGCA < 41bp 0.531746004888304 0.731750849098776 NA NA prediction 0.400009688420944 Functional Gain - CLDN18 ENSG00000066405 CDS Human protein_coding chr3:137742518 chr3:137742517 stopgain 0.963 1 20 hm7G_associated_SNPs_39087 0 0 0 0 1 CLDN18 chr3:137742500 3'AG 137742500 Downstream 18bp 35986 chr6 4037761 4037761 1 + C T HNSC 4037762 + 4037742 4037782 41 GTCTCGTTCCCCACTCAGACGTAGCAGGTCTCCAAGAAGAA GTCTCGTTCCCCACTCAGATGTAGCAGGTCTCCAAGAAGAA < 41bp 0.52324409232124 0.723246579276736 NA NA prediction 0.400004973910991 Functional Gain - PRPF4B ENSG00000112739 CDS Human protein_coding chr6:4037762 chr6:4037761 nonsynonymous SNV 0.999 2 20 hm7G_associated_SNPs_39089 0 0 1 0 1 PRPF4B chr6:4037804 5'GT 4037804 Upstream 44bp 35987 chr19 47673150 47673150 1 + C T UCEC 47673151 + 47673131 47673171 41 AGCAAAGGCTGCTCTGAAGCGCACGACCTCCGACTACTTTC AGCAAAGGCTGCTCTGAAGTGCACGACCTCCGACTACTTTC < 41bp 0.512448277528409 0.712450582393347 NA NA prediction 0.400004609729876 Functional Gain - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47673151 chr19:47673150 nonsynonymous SNV 0.657 4 20 hm7G_associated_SNPs_39091 0 0 1 0 2 SAE1 chr19:47673075 3'AG 47673075 Downstream 76bp 35988 chr19 47673150 47673150 1 + C T UCEC 47673151 + 47673131 47673171 41 AGCAAAGGCTGCTCTGAAGCGCACGACCTCCGACTACTTTC AGCAAAGGCTGCTCTGAAGTGCACGACCTCCGACTACTTTC < 41bp 0.512448277528409 0.712450582393347 NA NA prediction 0.400004609729876 Functional Gain - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47673151 chr19:47673150 nonsynonymous SNV 0.657 4 20 hm7G_associated_SNPs_39091 0 0 1 0 2 SAE1 chr19:47673180 5'GT 47673180 Upstream 31bp 35989 chr10 135020787 135020787 1 + C T COAD 135020788 + 135020768 135020808 41 ACGTCAACAAGCACCCGGGCGGCCGGCAGAAGGCCCGCATC ACGTCAACAAGCACCCGGGTGGCCGGCAGAAGGCCCGCATC < 41bp 0.532070653782911 0.732071813455837 NA NA prediction 0.400002319345852 Functional Gain - KNDC1 ENSG00000171798 CDS Human protein_coding chr10:135020788 chr10:135020787 synonymous SNV . 0 20 hm7G_associated_SNPs_39093 0 0 0 0 1 KNDC1 chr10:135020855 5'GT 135020855 Upstream 69bp 35990 chr10 114053509 114053509 1 + C G KIRC 114053509 + 114053489 114053529 41 TCCAAAGAATGCCAAGTTCTCCATCAAGAAAGAAGCTCCCT TCCAAAGAATGCCAAGTTCTGCATCAAGAAAGAAGCTCCCT Direct Gain 0 0.987020235346054 NA NA prediction 0.974040470692107 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053509 chr10:114053509 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39094 0 0 0 0 2 TECTB chr10:114053496 3'AG 114053496 Downstream 14bp 35991 chr10 114053509 114053509 1 + C G KIRC 114053509 + 114053489 114053529 41 TCCAAAGAATGCCAAGTTCTCCATCAAGAAAGAAGCTCCCT TCCAAAGAATGCCAAGTTCTGCATCAAGAAAGAAGCTCCCT Direct Gain 0 0.987020235346054 NA NA prediction 0.974040470692107 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053509 chr10:114053509 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39094 0 0 0 0 2 TECTB chr10:114053599 5'GT 114053599 Upstream 91bp 35992 chr17 57651146 57651146 1 + C G rs2523371 57651146 + 57651126 57651166 41 AGCTATTTCAGGAGAAGTCTCCTAATAGGAAGGAGCATTTA AGCTATTTCAGGAGAAGTCTGCTAATAGGAAGGAGCATTTA Direct Gain 0 0.983956130134683 NA NA prediction 0.967912260269366 Functional Gain - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57651146 chr17:57651146 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39095 0 0 0 0 1 DHX40 chr17:57651101 3'AG 57651101 Downstream 46bp 35993 chr12 56511279 56511279 1 + A G LIHC 56511279 + 56511259 56511299 41 TTTTCAGGCTGAAGCGCAAAAGAAGAAAGATGAGGCAGAGG TTTTCAGGCTGAAGCGCAAAGGAAGAAAGATGAGGCAGAGG Direct Gain 0 0.98347004663312 NA NA prediction 0.966940093266239 Functional Gain - RPL41 ENSG00000229117 CDS Human protein_coding chr12:56511279 chr12:56511279 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39096 0 0 1 0 1 RPL41 chr12:56511266 3'AG 56511266 Downstream 14bp 35994 chr16 21982886 21982886 1 + T G LGG 21982886 + 21982866 21982906 41 AAGCAAGTTGCTGAACAGTTTCTCAACATGAGGGGTGGGCT AAGCAAGTTGCTGAACAGTTGCTCAACATGAGGGGTGGGCT Direct Gain 0 0.980068377765611 NA NA prediction 0.960136755531222 Functional Gain - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21982886 chr16:21982886 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39098 0 0 1 0 2 UQCRC2 chr16:21982846 3'AG 21982846 Downstream 41bp 35995 chr16 21982886 21982886 1 + T G LGG 21982886 + 21982866 21982906 41 AAGCAAGTTGCTGAACAGTTTCTCAACATGAGGGGTGGGCT AAGCAAGTTGCTGAACAGTTGCTCAACATGAGGGGTGGGCT Direct Gain 0 0.980068377765611 NA NA prediction 0.960136755531222 Functional Gain - UQCRC2 ENSG00000140740 CDS Human protein_coding chr16:21982886 chr16:21982886 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39098 0 0 1 0 2 UQCRC2 chr16:21982941 5'GT 21982941 Upstream 56bp 35996 chr14 51370817 51370817 1 + A G STAD 51370817 + 51370797 51370837 41 TGAAATTGCACGCAATGCATACAGGAACAAAGAGAGGGTCA TGAAATTGCACGCAATGCATGCAGGAACAAAGAGAGGGTCA Direct Gain 0 0.980019805486496 NA NA prediction 0.960039610972992 Functional Gain - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51370817 chr14:51370817 nonsynonymous SNV 0.978 2 21 hm7G_associated_SNPs_39099 0 0 0 1 2 ABHD12B chr14:51370792 3'AG 51370792 Downstream 26bp 35997 chr14 51370817 51370817 1 + A G STAD 51370817 + 51370797 51370837 41 TGAAATTGCACGCAATGCATACAGGAACAAAGAGAGGGTCA TGAAATTGCACGCAATGCATGCAGGAACAAAGAGAGGGTCA Direct Gain 0 0.980019805486496 NA NA prediction 0.960039610972992 Functional Gain - ABHD12B ENSG00000131969 CDS Human protein_coding chr14:51370817 chr14:51370817 nonsynonymous SNV 0.978 2 21 hm7G_associated_SNPs_39099 0 0 0 1 2 ABHD12B chr14:51370910 5'GT 51370910 Upstream 94bp 35998 chr11 71821226 71821226 1 - T C LAML 71821226 - 71821206 71821246 41 ATGATGAAGATGATGAGGATAGTGAAGAGGACTCAGAGGAT ATGATGAAGATGATGAGGATGGTGAAGAGGACTCAGAGGAT Direct Gain 0 0.979416350606364 NA NA prediction 0.958832701212729 Functional Gain - ANAPC15 ENSG00000110200 CDS Human protein_coding chr11:71821226 chr11:71821226 nonsynonymous SNV 0.966 3 21 hm7G_associated_SNPs_39100 0 0 1 0 2 ANAPC15 chr11:71821134 5'GT 71821134 Upstream 93bp 35999 chr11 71821226 71821226 1 - T C LAML 71821226 - 71821206 71821246 41 ATGATGAAGATGATGAGGATAGTGAAGAGGACTCAGAGGAT ATGATGAAGATGATGAGGATGGTGAAGAGGACTCAGAGGAT Direct Gain 0 0.979416350606364 NA NA prediction 0.958832701212729 Functional Gain - ANAPC15 ENSG00000110200 CDS Human protein_coding chr11:71821226 chr11:71821226 nonsynonymous SNV 0.966 3 21 hm7G_associated_SNPs_39100 0 0 1 0 2 ANAPC15 chr11:71821271 3'AG 71821271 Downstream 46bp 36000 chr1 11779682 11779682 1 + A G BLCA 11779682 + 11779662 11779702 41 TCCACCGGAACCGCAGGGTTACACGGAGGAAAGGGCGCTGT TCCACCGGAACCGCAGGGTTGCACGGAGGAAAGGGCGCTGT Direct Gain 0 0.978525494569498 NA NA prediction 0.957050989138997 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11779682 chr1:11779682 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_39101 0 0 0 0 1 DRAXIN chr1:11779641 3'AG 11779641 Downstream 42bp 36001 chr17 27047880 27047880 1 + C G STAD 27047880 + 27047860 27047900 41 TCCGGAGACAGCCCAAATATCCTCGGAAGAGCGCTCCCAGG TCCGGAGACAGCCCAAATATGCTCGGAAGAGCGCTCCCAGG Direct Gain 0 0.978295891238233 NA NA prediction 0.956591782476467 Functional Gain - RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047880 chr17:27047880 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39102 0 0 1 0 1 RPL23A chr17:27047908 5'GT 27047908 Upstream 29bp 36002 chr20 42089377 42089377 1 + C G UCEC 42089377 + 42089357 42089397 41 GCAAAGGTCGATCACGTTCTCGATCAAAAGGCAGGAAATCT GCAAAGGTCGATCACGTTCTGGATCAAAAGGCAGGAAATCT Direct Gain 0 0.977735128944225 NA NA prediction 0.955470257888451 Functional Gain - SRSF6 ENSG00000124193 CDS Human protein_coding chr20:42089377 chr20:42089377 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39105 0 0 1 0 1 SRSF6 chr20:42089343 3'AG 42089343 Downstream 35bp 36003 chr11 47603695 47603695 1 + A G HNSC 47603695 + 47603675 47603715 41 ACGGATCCGTGTGAAGACCTACACAGATGAGCTGACGCCCA ACGGATCCGTGTGAAGACCTGCACAGATGAGCTGACGCCCA Direct Gain 0 0.977491598355958 NA NA prediction 0.954983196711915 Functional Gain - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47603695 chr11:47603695 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39107 0 0 1 0 2 NDUFS3 chr11:47603640 3'AG 47603640 Downstream 56bp 36004 chr11 47603695 47603695 1 + A G HNSC 47603695 + 47603675 47603715 41 ACGGATCCGTGTGAAGACCTACACAGATGAGCTGACGCCCA ACGGATCCGTGTGAAGACCTGCACAGATGAGCTGACGCCCA Direct Gain 0 0.977491598355958 NA NA prediction 0.954983196711915 Functional Gain - NDUFS3 ENSG00000213619 CDS Human protein_coding chr11:47603695 chr11:47603695 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39107 0 0 1 0 2 NDUFS3 chr11:47603765 5'GT 47603765 Upstream 71bp 36005 chr3 122829805 122829805 1 + C G BLCA 122829805 + 122829785 122829825 41 CCTCAGGACTTCAGACGGCTCCTGAAGAAGGAAGAGAAGCC CCTCAGGACTTCAGACGGCTGCTGAAGAAGGAAGAGAAGCC Direct Gain 0 0.977304326651083 NA NA prediction 0.954608653302165 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122829805 chr3:122829805 synonymous SNV . 0 21 hm7G_associated_SNPs_39108 0 0 1 0 2 PDIA5 chr3:122829791 3'AG 122829791 Downstream 15bp 36006 chr3 122829805 122829805 1 + C G BLCA 122829805 + 122829785 122829825 41 CCTCAGGACTTCAGACGGCTCCTGAAGAAGGAAGAGAAGCC CCTCAGGACTTCAGACGGCTGCTGAAGAAGGAAGAGAAGCC Direct Gain 0 0.977304326651083 NA NA prediction 0.954608653302165 Functional Gain - PDIA5 ENSG00000065485 CDS Human protein_coding chr3:122829805 chr3:122829805 synonymous SNV . 0 21 hm7G_associated_SNPs_39108 0 0 1 0 2 PDIA5 chr3:122829851 5'GT 122829851 Upstream 47bp 36007 chr3 14223069 14223069 1 + A G STAD 14223069 + 14223049 14223089 41 TCTTTTATCAGCAACAAACTACCAACACTGTAGAGGAGCCC TCTTTTATCAGCAACAAACTGCCAACACTGTAGAGGAGCCC Direct Gain 0 0.976983965023463 NA NA prediction 0.953967930046925 Functional Gain - LSM3 ENSG00000170860 CDS Human protein_coding chr3:14223069 chr3:14223069 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39109 0 0 1 0 1 LSM3 chr3:14223060 3'AG 14223060 Downstream 10bp 36008 chr2 136540398 136540398 1 + C G LUSC 136540398 + 136540378 136540418 41 AAATTTATAGATTAAGGACTCAAGATGATGGTGAAGATGAA AAATTTATAGATTAAGGACTGAAGATGATGGTGAAGATGAA Direct Gain 0 0.976376348317085 NA NA prediction 0.95275269663417 Functional Gain - UBXN4 ENSG00000144224 CDS Human protein_coding chr2:136540398 chr2:136540398 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39110 0 0 1 0 1 UBXN4 chr2:136540319 3'AG 136540319 Downstream 80bp 36009 chr17 42978443 42978443 1 + A G UCEC 42978443 + 42978423 42978463 41 ACTCACTGCTGATGAGAAGTACAAACGGGAGAATGCTGCCA ACTCACTGCTGATGAGAAGTGCAAACGGGAGAATGCTGCCA Direct Gain 0 0.976326732356505 NA NA prediction 0.95265346471301 Functional Gain - CCDC103 ENSG00000167131 CDS Human other chr17:42978443 chr17:42978443 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39111 0 0 0 0 2 CCDC103 chr17:42978358 3'AG 42978358 Downstream 86bp 36010 chr17 42978443 42978443 1 + A G UCEC 42978443 + 42978423 42978463 41 ACTCACTGCTGATGAGAAGTACAAACGGGAGAATGCTGCCA ACTCACTGCTGATGAGAAGTGCAAACGGGAGAATGCTGCCA Direct Gain 0 0.976326732356505 NA NA prediction 0.95265346471301 Functional Gain - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42978443 chr17:42978443 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39111 0 0 0 0 2 CCDC103 chr17:42978509 5'GT 42978509 Upstream 67bp 36011 chr5 172396433 172396433 1 + A G rs188914799 172396433 + 172396413 172396453 41 CAGGTGGTTATCACCAGGCTAAAACTGGACAAGGATCGGAA CAGGTGGTTATCACCAGGCTGAAACTGGACAAGGATCGGAA Direct Gain 0 0.976223548837429 NA NA prediction 0.952447097674858 Functional Gain - RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172396433 chr5:172396433 synonymous SNV . 0 21 hm7G_associated_SNPs_39112 0 0 0 0 1 RPL26L1 chr5:172396416 3'AG 172396416 Downstream 18bp 36012 chr3 40503441 40503441 1 + A G STAD 40503441 + 40503421 40503461 41 AATTTTCAGAGGAACAGAATAATCAAGAATGAAGTTAAGAA AATTTTCAGAGGAACAGAATGATCAAGAATGAAGTTAAGAA Direct Gain 0 0.97594290855131 NA NA prediction 0.95188581710262 Functional Gain - RPL14 ENSG00000188846 CDS Human other chr3:40503441 chr3:40503441 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39113 0 0 1 0 1 RPL14 chr3:40503430 3'AG 40503430 Downstream 12bp 36013 chr12 56436328 56436328 1 + T G LUSC 56436328 + 56436308 56436348 41 GCCATTAAGAAATTCGTCATTCGAAACATAGTGGAGGCCGC GCCATTAAGAAATTCGTCATGCGAAACATAGTGGAGGCCGC Direct Gain 0 0.975204383679927 NA NA prediction 0.950408767359854 Functional Gain - RPS26 ENSG00000197728 CDS Human protein_coding chr12:56436328 chr12:56436328 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39115 0 0 1 0 1 RPS26 chr12:56436386 5'GT 56436386 Upstream 59bp 36014 chr6 47471107 47471107 1 + A G LUSC 47471107 + 47471087 47471127 41 ATCAGGAATGTGAAAAAGCTACAGGAGGAAGGGTGGCTGGA ATCAGGAATGTGAAAAAGCTGCAGGAGGAAGGGTGGCTGGA Direct Gain 0 0.97463978121806 NA NA prediction 0.949279562436121 Functional Gain - CD2AP ENSG00000198087 CDS Human protein_coding chr6:47471107 chr6:47471107 synonymous SNV . 0 21 hm7G_associated_SNPs_39118 0 0 1 0 2 CD2AP chr6:47471016 3'AG 47471016 Downstream 92bp 36015 chr6 47471107 47471107 1 + A G LUSC 47471107 + 47471087 47471127 41 ATCAGGAATGTGAAAAAGCTACAGGAGGAAGGGTGGCTGGA ATCAGGAATGTGAAAAAGCTGCAGGAGGAAGGGTGGCTGGA Direct Gain 0 0.97463978121806 NA NA prediction 0.949279562436121 Functional Gain - CD2AP ENSG00000198087 CDS Human protein_coding chr6:47471107 chr6:47471107 synonymous SNV . 0 21 hm7G_associated_SNPs_39118 0 0 1 0 2 CD2AP chr6:47471176 5'GT 47471176 Upstream 70bp 36016 chr8 145160783 145160783 1 + A G GBM 145160783 + 145160763 145160803 41 ATCCTATAGGATTGAGAGCTACTCATGTAAGATGGCAGGAG ATCCTATAGGATTGAGAGCTGCTCATGTAAGATGGCAGGAG Direct Gain 0 0.973903794375104 NA NA prediction 0.947807588750209 Functional Gain - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145160783 chr8:145160783 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39121 0 0 1 0 1 MAF1 chr8:145160772 3'AG 145160772 Downstream 12bp 36017 chr19 50042431 50042431 1 + A G GBM 50042431 + 50042411 50042451 41 CTATGTCCAGGTGGAGGAGTACATCGGTGAGTGGGCCCCAA CTATGTCCAGGTGGAGGAGTGCATCGGTGAGTGGGCCCCAA Direct Gain 0 0.973589390707811 NA NA prediction 0.947178781415623 Functional Gain - RCN3 ENSG00000142552 CDS Human protein_coding chr19:50042431 chr19:50042431 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_39122 0 0 1 0 2 RCN3 chr19:50042376 3'AG 50042376 Downstream 56bp 36018 chr19 50042431 50042431 1 + A G GBM 50042431 + 50042411 50042451 41 CTATGTCCAGGTGGAGGAGTACATCGGTGAGTGGGCCCCAA CTATGTCCAGGTGGAGGAGTGCATCGGTGAGTGGGCCCCAA Direct Gain 0 0.973589390707811 NA NA prediction 0.947178781415623 Functional Gain - RCN3 ENSG00000142552 CDS Human protein_coding chr19:50042431 chr19:50042431 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_39122 0 0 1 0 2 RCN3 chr19:50042436 5'GT 50042436 Upstream 6bp 36019 chr18 19192399 19192399 1 + C G CESC 19192399 + 19192379 19192419 41 GGCGCCGCTAGGATGAAGCTCGTGAGGTGAGGGAGTGACCA GGCGCCGCTAGGATGAAGCTGGTGAGGTGAGGGAGTGACCA Direct Gain 0 0.973386984919603 NA NA prediction 0.946773969839206 Functional Gain - SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19192399 chr18:19192399 synonymous SNV . 0 21 hm7G_associated_SNPs_39124 0 0 1 0 1 SNRPD1 chr18:19192404 5'GT 19192404 Upstream 6bp 36020 chr12 16053889 16053889 1 + A G PRAD 16053889 + 16053869 16053909 41 TTCTTTTTACAGAAGAAGATAGTGGTGAGCTGGCAAAGCCA TTCTTTTTACAGAAGAAGATGGTGGTGAGCTGGCAAAGCCA Direct Gain 0 0.972655383238547 NA NA prediction 0.945310766477093 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16053889 chr12:16053889 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_39127 0 0 1 0 2 STRAP chr12:16053881 3'AG 16053881 Downstream 9bp 36021 chr12 16053889 16053889 1 + A G PRAD 16053889 + 16053869 16053909 41 TTCTTTTTACAGAAGAAGATAGTGGTGAGCTGGCAAAGCCA TTCTTTTTACAGAAGAAGATGGTGGTGAGCTGGCAAAGCCA Direct Gain 0 0.972655383238547 NA NA prediction 0.945310766477093 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16053889 chr12:16053889 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_39127 0 0 1 0 2 STRAP chr12:16053946 5'GT 16053946 Upstream 58bp 36022 chr4 186263183 186263183 1 + A G LUSC 186263183 + 186263163 186263203 41 TACTTTGTCATGGTAAGCCTACAAGAAGTTGGAGGAGTTGA TACTTTGTCATGGTAAGCCTGCAAGAAGTTGGAGGAGTTGA Direct Gain 0 0.972440703700198 NA NA prediction 0.944881407400396 Functional Gain - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186263183 chr4:186263183 synonymous SNV . 0 21 hm7G_associated_SNPs_39129 0 0 0 0 2 SNX25 chr4:186263130 3'AG 186263130 Downstream 54bp 36023 chr4 186263183 186263183 1 + A G LUSC 186263183 + 186263163 186263203 41 TACTTTGTCATGGTAAGCCTACAAGAAGTTGGAGGAGTTGA TACTTTGTCATGGTAAGCCTGCAAGAAGTTGGAGGAGTTGA Direct Gain 0 0.972440703700198 NA NA prediction 0.944881407400396 Functional Gain - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186263183 chr4:186263183 synonymous SNV . 0 21 hm7G_associated_SNPs_39129 0 0 0 0 2 SNX25 chr4:186263270 5'GT 186263270 Upstream 88bp 36024 chr3 57302458 57302458 1 + A G rs183787750 57302458 + 57302438 57302478 41 TCAGAAAAACAAAAAGAAATAGAGAGAGTAAAAGAGAAGCA TCAGAAAAACAAAAAGAAATGGAGAGAGTAAAAGAGAAGCA Direct Gain 0 0.972327877925185 NA NA prediction 0.94465575585037 Functional Gain - APPL1 ENSG00000157500 CDS Human protein_coding chr3:57302458 chr3:57302458 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39131 0 0 1 0 1 APPL1 chr3:57302426 3'AG 57302426 Downstream 33bp 36025 chr11 56954748 56954748 1 + C G LUSC 56954748 + 56954728 56954768 41 TGGCTGAGTGCCGGGGCCCTCCTGAAGTCGAGGGCGCCCCG TGGCTGAGTGCCGGGGCCCTGCTGAAGTCGAGGGCGCCCCG Direct Gain 0 0.972293705077327 NA NA prediction 0.944587410154655 Functional Gain - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56954748 chr11:56954748 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_39132 0 0 0 0 1 LRRC55 chr11:56954719 3'AG 56954719 Downstream 30bp 36026 chr1 209948726 209948726 1 + A G rs536014144 209948726 + 209948706 209948746 41 TGGGGAATGAAAAAAGTACTACTGGAGATGGAAGACCAGAA TGGGGAATGAAAAAAGTACTGCTGGAGATGGAAGACCAGAA Direct Gain 0 0.972117254165421 NA NA prediction 0.944234508330843 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209948726 chr1:209948726 synonymous SNV . 0 21 hm7G_associated_SNPs_39135 0 0 0 0 1 TRAF3IP3 chr1:209948694 3'AG 209948694 Downstream 33bp 36027 chr19 984554 984554 1 + C G rs4806884 984554 + 984534 984574 41 TACATCAGCGCCTGGGAGCTCCAGCGGAAGGTGCGGCGGTG TACATCAGCGCCTGGGAGCTGCAGCGGAAGGTGCGGCGGTG Direct Gain 0 0.972089488362819 NA NA prediction 0.944178976725638 Functional Gain - WDR18 ENSG00000065268 CDS Human protein_coding chr19:984554 chr19:984554 synonymous SNV . 0 21 hm7G_associated_SNPs_39136 0 0 1 0 1 WDR18 chr19:984563 5'GT 984563 Upstream 10bp 36028 chr5 132018237 132018237 1 + A G DLBC 132018237 + 132018217 132018257 41 GAAAACTTCTTGGAAAGGCTAAAGACGATCATGAGAGAGAA GAAAACTTCTTGGAAAGGCTGAAGACGATCATGAGAGAGAA Direct Gain 0 0.971889193244152 NA NA prediction 0.943778386488305 Functional Gain - IL4 ENSG00000113520 CDS Human protein_coding chr5:132018237 chr5:132018237 synonymous SNV . 0 21 hm7G_associated_SNPs_39137 0 0 0 0 1 IL4 chr5:132018178 3'AG 132018178 Downstream 60bp 36029 chr4 88732567 88732567 1 + A G COAD 88732567 + 88732547 88732587 41 AAGGAAAGTGATGAAGAAGAAGAGGAGGAAGAGGAAGGAAA AAGGAAAGTGATGAAGAAGAGGAGGAGGAAGAGGAAGGAAA Direct Gain 0 0.971757817477275 NA NA prediction 0.943515634954549 Functional Gain - IBSP ENSG00000029559 CDS Human protein_coding chr4:88732567 chr4:88732567 synonymous SNV . 0 21 hm7G_associated_SNPs_39138 0 0 0 0 1 IBSP chr4:88732514 3'AG 88732514 Downstream 54bp 36030 chr7 39606101 39606101 1 + C G HNSC 39606101 + 39606081 39606121 41 GAAGAAGCAGACGAGTCGCTCCTGGCGCAGCGGGAATGGCA GAAGAAGCAGACGAGTCGCTGCTGGCGCAGCGGGAATGGCA Direct Gain 0 0.971610411180075 NA NA prediction 0.943220822360151 Functional Gain - YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39606101 chr7:39606101 synonymous SNV . 0 21 hm7G_associated_SNPs_39139 0 0 1 0 1 YAE1D1 chr7:39606146 5'GT 39606146 Upstream 46bp 36031 chr11 18424487 18424487 1 + A G rs4820 18424487 + 18424467 18424507 41 TCAGCCCGATTCCGTTACCTAATGGGGGAAAGGCTGGGAGT TCAGCCCGATTCCGTTACCTGATGGGGGAAAGGCTGGGAGT Direct Gain 0 0.97152818864329 NA NA prediction 0.943056377286581 Functional Gain - LDHA ENSG00000134333 CDS Human protein_coding chr11:18424487 chr11:18424487 synonymous SNV . 0 21 hm7G_associated_SNPs_39142 2 0 1 0 1 LDHA chr11:18424560 5'GT 18424560 Upstream 74bp 36032 chr1 12815735 12815735 1 + C G CESC 12815735 + 12815715 12815755 41 CCACAGACCAGACCAGATCTCCAGGTGGTATGGGAAGAGGA CCACAGACCAGACCAGATCTGCAGGTGGTATGGGAAGAGGA Direct Gain 0 0.971514896999683 NA NA prediction 0.943029793999367 Functional Gain - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12815735 chr1:12815735 nonsynonymous SNV 0.719 1 21 hm7G_associated_SNPs_39143 0 0 0 0 2 C1orf158 chr1:12815650 3'AG 12815650 Downstream 86bp 36033 chr1 12815735 12815735 1 + C G CESC 12815735 + 12815715 12815755 41 CCACAGACCAGACCAGATCTCCAGGTGGTATGGGAAGAGGA CCACAGACCAGACCAGATCTGCAGGTGGTATGGGAAGAGGA Direct Gain 0 0.971514896999683 NA NA prediction 0.943029793999367 Functional Gain - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12815735 chr1:12815735 nonsynonymous SNV 0.719 1 21 hm7G_associated_SNPs_39143 0 0 0 0 2 C1orf158 chr1:12815763 5'GT 12815763 Upstream 29bp 36034 chr15 78841184 78841184 1 + C G BLCA 78841184 + 78841164 78841204 41 AAGACAGTAATCAGAGTTCTCAAACAAAAAGAAGTGGAGCA AAGACAGTAATCAGAGTTCTGAAACAAAAAGAAGTGGAGCA Direct Gain 0 0.971372409753752 NA NA prediction 0.942744819507505 Functional Gain - PSMA4 ENSG00000041357 CDS Human protein_coding chr15:78841184 chr15:78841184 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39145 0 0 1 0 1 PSMA4 chr15:78841132 3'AG 78841132 Downstream 53bp 36035 chr9 33030602 33030602 1 + A G LUSC 33030602 + 33030582 33030622 41 TCAGTCCTAAAGATAGATGTAAAAGCTGCAACGGAAGGAAG TCAGTCCTAAAGATAGATGTGAAAGCTGCAACGGAAGGAAG Direct Gain 0 0.971233903276062 NA NA prediction 0.942467806552125 Functional Gain - DNAJA1 ENSG00000086061 CDS Human protein_coding chr9:33030602 chr9:33030602 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39146 0 0 1 0 1 DNAJA1 chr9:33030665 5'GT 33030665 Upstream 64bp 36036 chr1 226026987 226026987 1 + A G SARC 226026987 + 226026967 226027007 41 GCTGGGCTTCCAGGAATTCTACATTCAAGGAGGGGACTGGG GCTGGGCTTCCAGGAATTCTGCATTCAAGGAGGGGACTGGG Direct Gain 0 0.971171285800634 NA NA prediction 0.942342571601269 Functional Gain - EPHX1 ENSG00000143819 CDS Human protein_coding chr1:226026987 chr1:226026987 nonsynonymous SNV 0.920 4 21 hm7G_associated_SNPs_39147 0 0 1 0 1 EPHX1 chr1:226027047 5'GT 226027047 Upstream 61bp 36037 chrX 37526617 37526617 1 + C G LUSC 37526617 + 37526597 37526637 41 TGTATTCGGTGTGGGGAACTCACATGGCAGAAAGGCCTGCT TGTATTCGGTGTGGGGAACTGACATGGCAGAAAGGCCTGCT Direct Gain 0 0.970932273810425 NA NA prediction 0.94186454762085 Functional Gain - LANCL3 ENSG00000147036 CDS Human protein_coding chrX:37526617 chrX:37526617 synonymous SNV . 0 21 hm7G_associated_SNPs_39149 0 0 0 0 1 LANCL3 chrX:37526535 3'AG 37526535 Downstream 83bp 36038 chr17 38340928 38340928 1 + A G rs79118406 38340928 + 38340908 38340948 41 CTGGTGGAGACGGTGGAACTAAAGTGAGGGGGAGTGGGGCA CTGGTGGAGACGGTGGAACTGAAGTGAGGGGGAGTGGGGCA Direct Gain 0 0.97047797843816 NA NA prediction 0.940955956876319 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38340928 chr17:38340928 synonymous SNV . 0 21 hm7G_associated_SNPs_39150 0 0 0 0 2 RAPGEFL1 chr17:38340833 3'AG 38340833 Downstream 96bp 36039 chr17 38340928 38340928 1 + A G rs79118406 38340928 + 38340908 38340948 41 CTGGTGGAGACGGTGGAACTAAAGTGAGGGGGAGTGGGGCA CTGGTGGAGACGGTGGAACTGAAGTGAGGGGGAGTGGGGCA Direct Gain 0 0.97047797843816 NA NA prediction 0.940955956876319 Functional Gain - RAPGEFL1 ENSG00000108352 CDS Human protein_coding chr17:38340928 chr17:38340928 synonymous SNV . 0 21 hm7G_associated_SNPs_39150 0 0 0 0 2 RAPGEFL1 chr17:38340930 5'GT 38340930 Upstream 3bp 36040 chr8 109498750 109498750 1 + C G LUSC 109498750 + 109498730 109498770 41 TTTTTAATTAGTTTGCAGGTCGAAGTAAGAAGGAAACCAAA TTTTTAATTAGTTTGCAGGTGGAAGTAAGAAGGAAACCAAA Direct Gain 0 0.970303951686464 NA NA prediction 0.940607903372929 Functional Gain - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109498750 chr8:109498750 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39151 0 0 1 0 1 EMC2 chr8:109498741 3'AG 109498741 Downstream 10bp 36041 chr1 19585249 19585249 1 + C G HNSC 19585249 + 19585229 19585269 41 GATTCACAGTCGGGAAGGTTCCAGCAGATGGGAGACGACTT GATTCACAGTCGGGAAGGTTGCAGCAGATGGGAGACGACTT Direct Gain 0 0.970292729552529 NA NA prediction 0.940585459105059 Functional Gain - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19585249 chr1:19585249 nonsynonymous SNV 0.980 0 21 hm7G_associated_SNPs_39152 0 0 1 0 1 MRTO4 chr1:19585175 3'AG 19585175 Downstream 75bp 36042 chr11 65633360 65633360 1 + A G rs147710844 65633360 + 65633340 65633380 41 ACCATTAAGTGTGGGCGTCTACAGAGGTGAGGGCAAGAGAC ACCATTAAGTGTGGGCGTCTGCAGAGGTGAGGGCAAGAGAC Direct Gain 0 0.970253503500464 NA NA prediction 0.940507007000928 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65633360 chr11:65633360 synonymous SNV . 0 21 hm7G_associated_SNPs_39153 0 0 1 0 2 MUS81 chr11:65633282 3'AG 65633282 Downstream 79bp 36043 chr11 65633360 65633360 1 + A G rs147710844 65633360 + 65633340 65633380 41 ACCATTAAGTGTGGGCGTCTACAGAGGTGAGGGCAAGAGAC ACCATTAAGTGTGGGCGTCTGCAGAGGTGAGGGCAAGAGAC Direct Gain 0 0.970253503500464 NA NA prediction 0.940507007000928 Functional Gain - MUS81 ENSG00000172732 CDS Human protein_coding chr11:65633360 chr11:65633360 synonymous SNV . 0 21 hm7G_associated_SNPs_39153 0 0 1 0 2 MUS81 chr11:65633365 5'GT 65633365 Upstream 6bp 36044 chr11 58378424 58378424 1 + A G rs8373 58378424 + 58378404 58378444 41 TCTATTTACTTATTTTTAGTAGTGAAGAGGAAGAGGAGGAG TCTATTTACTTATTTTTAGTGGTGAAGAGGAAGAGGAGGAG Direct Gain 0 0.970236382232919 NA NA prediction 0.940472764465838 Functional Gain - ZFP91;ZFP91 ENSG00000186660;ENSG00000255073 CDS Human other chr11:58378424 chr11:58378424 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39154 0 0 1 0 1 ZFP91 chr11:58378423 3'AG 58378423 Downstream 2bp 36045 chrX 12994419 12994419 1 + C G LUSC 12994419 + 12994399 12994439 41 ATGGCTGAGATCGAGAAATTCGATAAGTCGAAACTGAAGAA ATGGCTGAGATCGAGAAATTGGATAAGTCGAAACTGAAGAA Direct Gain 0 0.970103789486892 NA NA prediction 0.940207578973783 Functional Gain - TMSB4X ENSG00000205542 CDS Human protein_coding chrX:12994419 chrX:12994419 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39156 0 0 0 0 2 TMSB4X chrX:12994365 3'AG 12994365 Downstream 55bp 36046 chrX 12994419 12994419 1 + C G LUSC 12994419 + 12994399 12994439 41 ATGGCTGAGATCGAGAAATTCGATAAGTCGAAACTGAAGAA ATGGCTGAGATCGAGAAATTGGATAAGTCGAAACTGAAGAA Direct Gain 0 0.970103789486892 NA NA prediction 0.940207578973783 Functional Gain - TMSB4X ENSG00000205542 CDS Human protein_coding chrX:12994419 chrX:12994419 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39156 0 0 0 0 2 TMSB4X chrX:12994480 5'GT 12994480 Upstream 62bp 36047 chr11 46724540 46724540 1 + A G UCEC 46724540 + 46724520 46724560 41 ACTTTGCTTTGCAGCTTGGTACAACGGGGCAGGCTGGAGAG ACTTTGCTTTGCAGCTTGGTGCAACGGGGCAGGCTGGAGAG Direct Gain 0 0.970061739918131 NA NA prediction 0.940123479836263 Functional Gain - ZNF408 ENSG00000175213 CDS Human protein_coding chr11:46724540 chr11:46724540 synonymous SNV . 0 21 hm7G_associated_SNPs_39157 0 0 1 0 1 ZNF408 chr11:46724534 3'AG 46724534 Downstream 7bp 36048 chr20 62505086 62505086 1 + C G BLCA 62505086 + 62505066 62505106 41 GAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTC GAGAGGCACTGTGGAGAGCTGAAGAGGAGGCTGGGCCTCTC Direct Gain 0 0.969913157664199 NA NA prediction 0.939826315328398 Functional Gain - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505086 chr20:62505086 synonymous SNV . 0 21 hm7G_associated_SNPs_39158 0 0 1 0 2 TPD52L2 chr20:62505021 3'AG 62505021 Downstream 66bp 36049 chr20 62505086 62505086 1 + C G BLCA 62505086 + 62505066 62505106 41 GAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTC GAGAGGCACTGTGGAGAGCTGAAGAGGAGGCTGGGCCTCTC Direct Gain 0 0.969913157664199 NA NA prediction 0.939826315328398 Functional Gain - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505086 chr20:62505086 synonymous SNV . 0 21 hm7G_associated_SNPs_39158 0 0 1 0 2 TPD52L2 chr20:62505169 5'GT 62505169 Upstream 84bp 36050 chr1 3677907 3677907 1 + C G BLCA 3677907 + 3677887 3677927 41 GACGAGGAGATCCTGCTGCTCCAGGAGGAGAGGGAGGCCCT GACGAGGAGATCCTGCTGCTGCAGGAGGAGAGGGAGGCCCT Direct Gain 0 0.969793193512179 NA NA prediction 0.939586387024357 Functional Gain - CCDC27 ENSG00000162592 CDS Human protein_coding chr1:3677907 chr1:3677907 synonymous SNV . 0 21 hm7G_associated_SNPs_39159 0 0 0 0 1 CCDC27 chr1:3677845 3'AG 3677845 Downstream 63bp 36051 chr12 22208464 22208464 1 + T G READ 22208464 + 22208444 22208484 41 TCTTCAAAAAGTTGCAGAAATGATTCGAGAAGAAGGATATG TCTTCAAAAAGTTGCAGAAAGGATTCGAGAAGAAGGATATG Direct Gain 0 0.969604946358409 NA NA prediction 0.939209892716819 Functional Gain - CMAS ENSG00000111726 CDS Human protein_coding chr12:22208464 chr12:22208464 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39160 0 0 1 0 2 CMAS chr12:22208389 3'AG 22208389 Downstream 76bp 36052 chr12 22208464 22208464 1 + T G READ 22208464 + 22208444 22208484 41 TCTTCAAAAAGTTGCAGAAATGATTCGAGAAGAAGGATATG TCTTCAAAAAGTTGCAGAAAGGATTCGAGAAGAAGGATATG Direct Gain 0 0.969604946358409 NA NA prediction 0.939209892716819 Functional Gain - CMAS ENSG00000111726 CDS Human protein_coding chr12:22208464 chr12:22208464 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39160 0 0 1 0 2 CMAS chr12:22208544 5'GT 22208544 Upstream 81bp 36053 chr19 17972271 17972271 1 + A G UCEC 17972271 + 17972251 17972291 41 GTCTTCAGGGGAGATTGTCTACTGTGGGCAGGTATGGAGAG GTCTTCAGGGGAGATTGTCTGCTGTGGGCAGGTATGGAGAG Direct Gain 0 0.969508066218101 NA NA prediction 0.939016132436201 Functional Gain - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17972271 chr19:17972271 nonsynonymous SNV 0.766 0 21 hm7G_associated_SNPs_39161 0 0 1 0 1 RPL18A chr19:17972281 5'GT 17972281 Upstream 11bp 36054 chrX 133609223 133609223 1 + T G CESC 133609223 + 133609203 133609243 41 TTCTGTAGGACTGAACGTCTTGCTCGAGATGTGATGAAGGA TTCTGTAGGACTGAACGTCTGGCTCGAGATGTGATGAAGGA Direct Gain 0 0.969420049569686 NA NA prediction 0.938840099139372 Functional Gain - HPRT1 ENSG00000165704 CDS Human protein_coding chrX:133609223 chrX:133609223 synonymous SNV . 0 21 hm7G_associated_SNPs_39162 0 0 1 1 1 HPRT1 chrX:133609211 3'AG 133609211 Downstream 13bp 36055 chrX 15818001 15818001 1 + C G BLCA 15818001 + 15817981 15818021 41 TTTAAATTCCCTAGGACTCTCACAGAAGGAGGAAGAGGAGG TTTAAATTCCCTAGGACTCTGACAGAAGGAGGAAGAGGAGG Direct Gain 0 0.96894483512264 NA NA prediction 0.93788967024528 Functional Gain - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15818001 chrX:15818001 stopgain 0.903 0 21 hm7G_associated_SNPs_39163 0 0 1 0 2 ZRSR2 chrX:15817995 3'AG 15817995 Downstream 7bp 36056 chrX 15818001 15818001 1 + C G BLCA 15818001 + 15817981 15818021 41 TTTAAATTCCCTAGGACTCTCACAGAAGGAGGAAGAGGAGG TTTAAATTCCCTAGGACTCTGACAGAAGGAGGAAGAGGAGG Direct Gain 0 0.96894483512264 NA NA prediction 0.93788967024528 Functional Gain - ZRSR2 ENSG00000169249 CDS Human protein_coding chrX:15818001 chrX:15818001 stopgain 0.903 0 21 hm7G_associated_SNPs_39163 0 0 1 0 2 ZRSR2 chrX:15818076 5'GT 15818076 Upstream 76bp 36057 chr14 58862762 58862762 1 + C G BLCA 58862762 + 58862742 58862782 41 CTGGGCTATTGTATTTACCTCAACCGGAAGCGGCGCGGGGA CTGGGCTATTGTATTTACCTGAACCGGAAGCGGCGCGGGGA Direct Gain 0 0.968900978752901 NA NA prediction 0.937801957505801 Functional Gain - TOMM20L ENSG00000196860 CDS Human protein_coding chr14:58862762 chr14:58862762 synonymous SNV . 0 21 hm7G_associated_SNPs_39164 0 0 0 0 1 TOMM20L chr14:58862811 5'GT 58862811 Upstream 50bp 36058 chr6 107365484 107365484 1 + A G LUAD 107365484 + 107365464 107365504 41 CAAAGTGGAAGATGCTTTCTACAAAGGTGAACTCAGGCTGA CAAAGTGGAAGATGCTTTCTGCAAAGGTGAACTCAGGCTGA Direct Gain 0 0.968835532268665 NA NA prediction 0.937671064537331 Functional Gain - C6orf203 ENSG00000130349 CDS Human protein_coding chr6:107365484 chr6:107365484 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39165 0 0 1 0 2 C6orf203 chr6:107365464 3'AG 107365464 Downstream 21bp 36059 chr6 107365484 107365484 1 + A G LUAD 107365484 + 107365464 107365504 41 CAAAGTGGAAGATGCTTTCTACAAAGGTGAACTCAGGCTGA CAAAGTGGAAGATGCTTTCTGCAAAGGTGAACTCAGGCTGA Direct Gain 0 0.968835532268665 NA NA prediction 0.937671064537331 Functional Gain - C6orf203 ENSG00000130349 CDS Human protein_coding chr6:107365484 chr6:107365484 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39165 0 0 1 0 2 C6orf203 chr6:107365536 5'GT 107365536 Upstream 53bp 36060 chr17 41150820 41150820 1 + A G rs116316268 41150820 + 41150800 41150840 41 GCTTGTCCTGGCTGGACGCTACTCCGGACGCAAAGCTGTCA GCTTGTCCTGGCTGGACGCTGCTCCGGACGCAAAGCTGTCA Direct Gain 0 0.968810123442463 NA NA prediction 0.937620246884925 Functional Gain - RPL27 ENSG00000131469 CDS Human protein_coding chr17:41150820 chr17:41150820 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39166 0 0 1 0 2 RPL27 chr17:41150766 3'AG 41150766 Downstream 55bp 36061 chr17 41150820 41150820 1 + A G rs116316268 41150820 + 41150800 41150840 41 GCTTGTCCTGGCTGGACGCTACTCCGGACGCAAAGCTGTCA GCTTGTCCTGGCTGGACGCTGCTCCGGACGCAAAGCTGTCA Direct Gain 0 0.968810123442463 NA NA prediction 0.937620246884925 Functional Gain - RPL27 ENSG00000131469 CDS Human protein_coding chr17:41150820 chr17:41150820 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39166 0 0 1 0 2 RPL27 chr17:41150848 5'GT 41150848 Upstream 29bp 36062 chr4 187173218 187173218 1 + T G SKCM 187173218 + 187173198 187173238 41 TTGTTGGAGGAACAAACTCTTCTTGGGGAGAGTGGCCCTGG TTGTTGGAGGAACAAACTCTGCTTGGGGAGAGTGGCCCTGG Direct Gain 0 0.968659934660617 NA NA prediction 0.937319869321235 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187173218 chr4:187173218 nonsynonymous SNV 0.966 1 21 hm7G_associated_SNPs_39167 0 0 0 0 1 KLKB1 chr4:187173171 3'AG 187173171 Downstream 48bp 36063 chr1 40747127 40747127 1 + C G OV 40747127 + 40747107 40747147 41 TCTGTACTAAACAAAGACATCCAGGAGGATTCTGGCATGGA TCTGTACTAAACAAAGACATGCAGGAGGATTCTGGCATGGA Direct Gain 0 0.968656741876984 NA NA prediction 0.937313483753967 Functional Gain - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40747127 chr1:40747127 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39168 0 0 1 0 1 ZMPSTE24 chr1:40747199 5'GT 40747199 Upstream 73bp 36064 chr7 99008722 99008722 1 + A G OV 99008722 + 99008702 99008742 41 CCTGTGGAAGGAAAATGCCTAAAGTCAAAAGAAGCCGGAAA CCTGTGGAAGGAAAATGCCTGAAGTCAAAAGAAGCCGGAAA Direct Gain 0 0.968532005404478 NA NA prediction 0.937064010808955 Functional Gain - BUD31 ENSG00000106245 CDS Human protein_coding chr7:99008722 chr7:99008722 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_39171 0 0 1 0 2 BUD31 chr7:99008687 3'AG 99008687 Downstream 36bp 36065 chr7 99008722 99008722 1 + A G OV 99008722 + 99008702 99008742 41 CCTGTGGAAGGAAAATGCCTAAAGTCAAAAGAAGCCGGAAA CCTGTGGAAGGAAAATGCCTGAAGTCAAAAGAAGCCGGAAA Direct Gain 0 0.968532005404478 NA NA prediction 0.937064010808955 Functional Gain - BUD31 ENSG00000106245 CDS Human protein_coding chr7:99008722 chr7:99008722 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_39171 0 0 1 0 2 BUD31 chr7:99008809 5'GT 99008809 Upstream 88bp 36066 chr11 67250653 67250653 1 + C G BLCA 67250653 + 67250633 67250673 41 GCGGATATCATCGCAAGACTCCGGGAGGACGGGATCCAAAA GCGGATATCATCGCAAGACTGCGGGAGGACGGGATCCAAAA Direct Gain 0 0.96844982168857 NA NA prediction 0.936899643377141 Functional Gain - AIP ENSG00000110711 CDS Human protein_coding chr11:67250653 chr11:67250653 synonymous SNV . 0 21 hm7G_associated_SNPs_39173 0 0 1 0 1 AIP chr11:67250728 5'GT 67250728 Upstream 76bp 36067 chr2 61413601 61413601 1 + C G KIRC 61413601 + 61413581 61413621 41 TTAACAAATAAGAAGATCATCATGAAATGGAGATGTGGGAA TTAACAAATAAGAAGATCATGATGAAATGGAGATGTGGGAA Direct Gain 0 0.968354680409277 NA NA prediction 0.936709360818554 Functional Gain - AHSA2 ENSG00000173209 CDS Human protein_coding chr2:61413601 chr2:61413601 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_39174 0 0 1 2 2 AHSA2 chr2:61413581 3'AG 61413581 Downstream 21bp 36068 chr2 61413601 61413601 1 + C G KIRC 61413601 + 61413581 61413621 41 TTAACAAATAAGAAGATCATCATGAAATGGAGATGTGGGAA TTAACAAATAAGAAGATCATGATGAAATGGAGATGTGGGAA Direct Gain 0 0.968354680409277 NA NA prediction 0.936709360818554 Functional Gain - AHSA2 ENSG00000173209 CDS Human protein_coding chr2:61413601 chr2:61413601 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_39174 0 0 1 2 2 AHSA2 chr2:61413632 5'GT 61413632 Upstream 32bp 36069 chr14 24606746 24606746 1 + A G COAD 24606746 + 24606726 24606766 41 CAGAAGGAAGACAAGGATGAAAAGAAGAAGGGGGAGGATGA CAGAAGGAAGACAAGGATGAGAAGAAGAAGGGGGAGGATGA Direct Gain 0 0.96831109810915 NA NA prediction 0.9366221962183 Functional Gain - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24606746 chr14:24606746 synonymous SNV . 0 21 hm7G_associated_SNPs_39175 0 0 1 0 2 PSME1 chr14:24606729 3'AG 24606729 Downstream 18bp 36070 chr14 24606746 24606746 1 + A G COAD 24606746 + 24606726 24606766 41 CAGAAGGAAGACAAGGATGAAAAGAAGAAGGGGGAGGATGA CAGAAGGAAGACAAGGATGAGAAGAAGAAGGGGGAGGATGA Direct Gain 0 0.96831109810915 NA NA prediction 0.9366221962183 Functional Gain - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24606746 chr14:24606746 synonymous SNV . 0 21 hm7G_associated_SNPs_39175 0 0 1 0 2 PSME1 chr14:24606774 5'GT 24606774 Upstream 29bp 36071 chrX 100093251 100093251 1 + A G LUAD 100093251 + 100093231 100093271 41 GCTTTGATTATGCAGGTTCTACAACTGACTGCAGACCAGAT GCTTTGATTATGCAGGTTCTGCAACTGACTGCAGACCAGAT Direct Gain 0 0.96812151566796 NA NA prediction 0.936243031335921 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100093251 chrX:100093251 synonymous SNV . 0 21 hm7G_associated_SNPs_39176 0 0 1 0 1 CSTF2 chrX:100093228 3'AG 100093228 Downstream 24bp 36072 chr20 18449658 18449658 1 + A G LUAD 18449658 + 18449638 18449678 41 TTCAGAATGAAATGCCTCATATAGAAGCCCAGCAGCGGGCA TTCAGAATGAAATGCCTCATGTAGAAGCCCAGCAGCGGGCA Direct Gain 0 0.968021554609087 NA NA prediction 0.936043109218174 Functional Gain - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18449658 chr20:18449658 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39178 0 0 1 1 2 POLR3F chr20:18449588 3'AG 18449588 Downstream 71bp 36073 chr20 18449658 18449658 1 + A G LUAD 18449658 + 18449638 18449678 41 TTCAGAATGAAATGCCTCATATAGAAGCCCAGCAGCGGGCA TTCAGAATGAAATGCCTCATGTAGAAGCCCAGCAGCGGGCA Direct Gain 0 0.968021554609087 NA NA prediction 0.936043109218174 Functional Gain - POLR3F ENSG00000132664 CDS Human protein_coding chr20:18449658 chr20:18449658 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39178 0 0 1 1 2 POLR3F chr20:18449705 5'GT 18449705 Upstream 48bp 36074 chr11 65650870 65650870 1 + C G LUSC 65650870 + 65650850 65650890 41 ATACTGGATCCTGAAGAACTCCTGGGGGGCCCAATGGGGAG ATACTGGATCCTGAAGAACTGCTGGGGGGCCCAATGGGGAG Direct Gain 0 0.967743150846362 NA NA prediction 0.935486301692724 Functional Gain - CTSW ENSG00000172543 CDS Human protein_coding chr11:65650870 chr11:65650870 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_39180 0 0 0 0 1 CTSW chr11:65650895 5'GT 65650895 Upstream 26bp 36075 chr5 64883139 64883139 1 + A G rs145769947 64883139 + 64883119 64883159 41 ACTAAAGGAATGGAAGTTGTACAGAGGATCTCCAACGTCAA ACTAAAGGAATGGAAGTTGTGCAGAGGATCTCCAACGTCAA Direct Gain 0 0.967548144891315 NA NA prediction 0.935096289782629 Functional Gain - PPWD1 ENSG00000113593 CDS Human protein_coding chr5:64883139 chr5:64883139 synonymous SNV . 0 21 hm7G_associated_SNPs_39181 0 0 1 0 1 PPWD1 chr5:64883080 3'AG 64883080 Downstream 60bp 36076 chr20 42979326 42979326 1 + A G LGG 42979326 + 42979306 42979346 41 CTGGATTGGCGAGTCCCCGTACAAGATGGGAAAGCCGTGCT CTGGATTGGCGAGTCCCCGTGCAAGATGGGAAAGCCGTGCT Direct Gain 0 0.967457533142065 NA NA prediction 0.934915066284129 Functional Gain - R3HDML ENSG00000101074 CDS Human protein_coding chr20:42979326 chr20:42979326 nonsynonymous SNV 0.060 4 21 hm7G_associated_SNPs_39182 0 0 0 0 1 R3HDML chr20:42979300 3'AG 42979300 Downstream 27bp 36077 chr1 159023365 159023365 1 + A G COAD 159023365 + 159023345 159023385 41 CTTATTATGAAATACAAGATAATACAGGGAAGATGGAAGTG CTTATTATGAAATACAAGATGATACAGGGAAGATGGAAGTG Direct Gain 0 0.967376213182618 NA NA prediction 0.934752426365236 Functional Gain - IFI16 ENSG00000163565 CDS Human protein_coding chr1:159023365 chr1:159023365 nonsynonymous SNV 0.010 0 21 hm7G_associated_SNPs_39183 0 0 0 0 1 IFI16 chr1:159023323 3'AG 159023323 Downstream 43bp 36078 chr11 62532662 62532662 1 + C G BLCA 62532662 + 62532642 62532682 41 TTTTTTTTCTAGGTTGGACTCTTCACAGAAATTGGGCCCAT TTTTTTTTCTAGGTTGGACTGTTCACAGAAATTGGGCCCAT Direct Gain 0 0.967220858297588 NA NA prediction 0.934441716595176 Functional Gain - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62532662 chr11:62532662 synonymous SNV . 0 21 hm7G_associated_SNPs_39184 0 0 1 0 2 POLR2G chr11:62532654 3'AG 62532654 Downstream 9bp 36079 chr11 62532662 62532662 1 + C G BLCA 62532662 + 62532642 62532682 41 TTTTTTTTCTAGGTTGGACTCTTCACAGAAATTGGGCCCAT TTTTTTTTCTAGGTTGGACTGTTCACAGAAATTGGGCCCAT Direct Gain 0 0.967220858297588 NA NA prediction 0.934441716595176 Functional Gain - POLR2G ENSG00000168002 CDS Human protein_coding chr11:62532662 chr11:62532662 synonymous SNV . 0 21 hm7G_associated_SNPs_39184 0 0 1 0 2 POLR2G chr11:62532704 5'GT 62532704 Upstream 43bp 36080 chr5 172395514 172395514 1 + A G LGG 172395514 + 172395494 172395534 41 TGGCAAGGTAGTCCAGGTGTACAGAAAGAAATATGTCATCT TGGCAAGGTAGTCCAGGTGTGCAGAAAGAAATATGTCATCT Direct Gain 0 0.967166908737767 NA NA prediction 0.934333817475535 Functional Gain - RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172395514 chr5:172395514 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39185 0 0 0 0 2 RPL26L1 chr5:172395462 3'AG 172395462 Downstream 53bp 36081 chr5 172395514 172395514 1 + A G LGG 172395514 + 172395494 172395534 41 TGGCAAGGTAGTCCAGGTGTACAGAAAGAAATATGTCATCT TGGCAAGGTAGTCCAGGTGTGCAGAAAGAAATATGTCATCT Direct Gain 0 0.967166908737767 NA NA prediction 0.934333817475535 Functional Gain - RPL26L1 ENSG00000037241 CDS Human protein_coding chr5:172395514 chr5:172395514 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39185 0 0 0 0 2 RPL26L1 chr5:172395602 5'GT 172395602 Upstream 89bp 36082 chr17 47590074 47590074 1 + C G BLCA 47590074 + 47590054 47590094 41 TCTGGTTTCTCTGCAGCCCTCAAGGGTGACGGAGGCCTCTA TCTGGTTTCTCTGCAGCCCTGAAGGGTGACGGAGGCCTCTA Direct Gain 0 0.966869798804494 NA NA prediction 0.933739597608989 Functional Gain - NGFR ENSG00000064300 CDS Human protein_coding chr17:47590074 chr17:47590074 synonymous SNV . 0 21 hm7G_associated_SNPs_39187 0 0 1 0 1 NGFR chr17:47590070 3'AG 47590070 Downstream 5bp 36083 chr4 174294601 174294601 1 + A G COAD 174294601 + 174294581 174294621 41 TTCAGAGTGTTCGAAACAGAAGAAAGAGAAAAGGGAGTGAT TTCAGAGTGTTCGAAACAGAGGAAAGAGAAAAGGGAGTGAT Direct Gain 0 0.966863160625303 NA NA prediction 0.933726321250606 Functional Gain - SAP30 ENSG00000164105 CDS Human protein_coding chr4:174294601 chr4:174294601 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39188 0 0 1 0 2 SAP30 chr4:174294541 3'AG 174294541 Downstream 61bp 36084 chr4 174294601 174294601 1 + A G COAD 174294601 + 174294581 174294621 41 TTCAGAGTGTTCGAAACAGAAGAAAGAGAAAAGGGAGTGAT TTCAGAGTGTTCGAAACAGAGGAAAGAGAAAAGGGAGTGAT Direct Gain 0 0.966863160625303 NA NA prediction 0.933726321250606 Functional Gain - SAP30 ENSG00000164105 CDS Human protein_coding chr4:174294601 chr4:174294601 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39188 0 0 1 0 2 SAP30 chr4:174294666 5'GT 174294666 Upstream 66bp 36085 chr10 96748615 96748615 1 + T G UCEC 96748615 + 96748595 96748635 41 TATTTTCAGGAAAACGGATTTGTGTGGGAGAAGCCCTGGCC TATTTTCAGGAAAACGGATTGGTGTGGGAGAAGCCCTGGCC Direct Gain 0 0.966790420034826 NA NA prediction 0.933580840069653 Functional Gain - CYP2C9 ENSG00000138109 CDS Human protein_coding chr10:96748615 chr10:96748615 nonsynonymous SNV 0.772 4 21 hm7G_associated_SNPs_39189 0 0 0 0 1 CYP2C9 chr10:96748604 3'AG 96748604 Downstream 12bp 36086 chr1 170135693 170135693 1 + A G rs41272485 170135693 + 170135673 170135713 41 TTGGACTGCGGCTCCGGGATAGGAAGGGTCAGCAAACACGT TTGGACTGCGGCTCCGGGATGGGAAGGGTCAGCAAACACGT Direct Gain 0 0.966576425839653 NA NA prediction 0.933152851679307 Functional Gain - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170135693 chr1:170135693 nonsynonymous SNV 0.973 4 21 hm7G_associated_SNPs_39192 0 0 0 0 1 METTL11B chr1:170135643 3'AG 170135643 Downstream 51bp 36087 chr2 37319356 37319356 1 + C G BLCA 37319356 + 37319336 37319376 41 ATGAAGCTAGAAGGAGATCTCAGAAGAAGCCAGCGAGCCTG ATGAAGCTAGAAGGAGATCTGAGAAGAAGCCAGCGAGCCTG Direct Gain 0 0.966555370892565 NA NA prediction 0.93311074178513 Functional Gain - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319356 chr2:37319356 synonymous SNV . 0 21 hm7G_associated_SNPs_39193 0 0 1 0 2 GPATCH11 chr2:37319308 3'AG 37319308 Downstream 49bp 36088 chr2 37319356 37319356 1 + C G BLCA 37319356 + 37319336 37319376 41 ATGAAGCTAGAAGGAGATCTCAGAAGAAGCCAGCGAGCCTG ATGAAGCTAGAAGGAGATCTGAGAAGAAGCCAGCGAGCCTG Direct Gain 0 0.966555370892565 NA NA prediction 0.93311074178513 Functional Gain - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37319356 chr2:37319356 synonymous SNV . 0 21 hm7G_associated_SNPs_39193 0 0 1 0 2 GPATCH11 chr2:37319398 5'GT 37319398 Upstream 43bp 36089 chr4 74702948 74702948 1 + T G LUAD 74702948 + 74702928 74702968 41 TGAAGAACGGGAAGCAAGTTTGTCTGGACCCGGAAGCCCCT TGAAGAACGGGAAGCAAGTTGGTCTGGACCCGGAAGCCCCT Direct Gain 0 0.966551284028997 NA NA prediction 0.933102568057994 Functional Gain - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702948 chr4:74702948 nonsynonymous SNV 0.010 4 21 hm7G_associated_SNPs_39194 0 0 0 0 2 CXCL6 chr4:74702920 3'AG 74702920 Downstream 29bp 36090 chr4 74702948 74702948 1 + T G LUAD 74702948 + 74702928 74702968 41 TGAAGAACGGGAAGCAAGTTTGTCTGGACCCGGAAGCCCCT TGAAGAACGGGAAGCAAGTTGGTCTGGACCCGGAAGCCCCT Direct Gain 0 0.966551284028997 NA NA prediction 0.933102568057994 Functional Gain - CXCL6 ENSG00000124875 CDS Human protein_coding chr4:74702948 chr4:74702948 nonsynonymous SNV 0.010 4 21 hm7G_associated_SNPs_39194 0 0 0 0 2 CXCL6 chr4:74703003 5'GT 74703003 Upstream 56bp 36091 chr2 143718222 143718222 1 + C G KIRP 143718222 + 143718202 143718242 41 ACCTTAAGAATAGAGGATATCCTTGAAGTAATTGAGAAGGA ACCTTAAGAATAGAGGATATGCTTGAAGTAATTGAGAAGGA Direct Gain 0 0.966485603472878 NA NA prediction 0.932971206945756 Functional Gain - KYNU ENSG00000115919 CDS Human protein_coding chr2:143718222 chr2:143718222 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_39195 0 0 1 0 1 KYNU chr2:143718193 3'AG 143718193 Downstream 30bp 36092 chr10 12238313 12238313 1 + C G LGG 12238313 + 12238293 12238333 41 TTCTTCCGAGGCGTTACCATCAAGAGGTGAGATGGGAGGGG TTCTTCCGAGGCGTTACCATGAAGAGGTGAGATGGGAGGGG Direct Gain 0 0.966367366948658 NA NA prediction 0.932734733897316 Functional Gain - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12238313 chr10:12238313 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39196 0 0 1 0 1 CDC123 chr10:12238318 5'GT 12238318 Upstream 6bp 36093 chr8 104452374 104452374 1 + C G STAD 104452374 + 104452354 104452394 41 TTTTCTATAGGGAGGTATATCATACAAAGAGAATGCAACAT TTTTCTATAGGGAGGTATATGATACAAAGAGAATGCAACAT Direct Gain 0 0.966228274982423 NA NA prediction 0.932456549964846 Functional Gain - DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104452374 chr8:104452374 nonsynonymous SNV 0.863 4 21 hm7G_associated_SNPs_39197 0 0 1 0 1 DCAF13 chr8:104452364 3'AG 104452364 Downstream 11bp 36094 chr12 93157879 93157879 1 + A G UCEC 93157879 + 93157859 93157899 41 ACTCCTGAGTTGCAAGCAGTAATAAAAGAGGGTGGTTCGTG ACTCCTGAGTTGCAAGCAGTGATAAAAGAGGGTGGTTCGTG Direct Gain 0 0.966190307552322 NA NA prediction 0.932380615104643 Functional Gain - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93157879 chr12:93157879 synonymous SNV . 0 21 hm7G_associated_SNPs_39198 0 0 0 0 2 PLEKHG7 chr12:93157817 3'AG 93157817 Downstream 63bp 36095 chr12 93157879 93157879 1 + A G UCEC 93157879 + 93157859 93157899 41 ACTCCTGAGTTGCAAGCAGTAATAAAAGAGGGTGGTTCGTG ACTCCTGAGTTGCAAGCAGTGATAAAAGAGGGTGGTTCGTG Direct Gain 0 0.966190307552322 NA NA prediction 0.932380615104643 Functional Gain - PLEKHG7 ENSG00000187510 CDS Human protein_coding chr12:93157879 chr12:93157879 synonymous SNV . 0 21 hm7G_associated_SNPs_39198 0 0 0 0 2 PLEKHG7 chr12:93157970 5'GT 93157970 Upstream 92bp 36096 chr3 53221415 53221415 1 + A G BLCA 53221415 + 53221395 53221435 41 ACACAGCAAGGGCATCATTTACAGGTGCGGGGGTGAGGGCA ACACAGCAAGGGCATCATTTGCAGGTGCGGGGGTGAGGGCA Direct Gain 0 0.966145186749242 NA NA prediction 0.932290373498484 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53221415 chr3:53221415 nonsynonymous SNV 0.982 4 21 hm7G_associated_SNPs_39199 0 0 1 0 2 PRKCD chr3:53221356 3'AG 53221356 Downstream 60bp 36097 chr3 53221415 53221415 1 + A G BLCA 53221415 + 53221395 53221435 41 ACACAGCAAGGGCATCATTTACAGGTGCGGGGGTGAGGGCA ACACAGCAAGGGCATCATTTGCAGGTGCGGGGGTGAGGGCA Direct Gain 0 0.966145186749242 NA NA prediction 0.932290373498484 Functional Gain - PRKCD ENSG00000163932 CDS Human protein_coding chr3:53221415 chr3:53221415 nonsynonymous SNV 0.982 4 21 hm7G_associated_SNPs_39199 0 0 1 0 2 PRKCD chr3:53221418 5'GT 53221418 Upstream 4bp 36098 chr1 201926647 201926647 1 + C G STAD 201926647 + 201926627 201926667 41 TTTTTGTTATAGGGAGTAAACCACAGACTACGAGGGAGTTT TTTTTGTTATAGGGAGTAAAGCACAGACTACGAGGGAGTTT Direct Gain 0 0.965946289629346 NA NA prediction 0.931892579258692 Functional Gain - TIMM17A ENSG00000134375 CDS Human protein_coding chr1:201926647 chr1:201926647 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39202 0 0 1 0 2 TIMM17A chr1:201926639 3'AG 201926639 Downstream 9bp 36099 chr1 201926647 201926647 1 + C G STAD 201926647 + 201926627 201926667 41 TTTTTGTTATAGGGAGTAAACCACAGACTACGAGGGAGTTT TTTTTGTTATAGGGAGTAAAGCACAGACTACGAGGGAGTTT Direct Gain 0 0.965946289629346 NA NA prediction 0.931892579258692 Functional Gain - TIMM17A ENSG00000134375 CDS Human protein_coding chr1:201926647 chr1:201926647 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39202 0 0 1 0 2 TIMM17A chr1:201926702 5'GT 201926702 Upstream 56bp 36100 chr1 153945465 153945465 1 + C G LUSC 153945465 + 153945445 153945485 41 AAGGCAGAGGAGAGGGTCCTCAAGAAGGTCAGGAGGAAAAT AAGGCAGAGGAGAGGGTCCTGAAGAAGGTCAGGAGGAAAAT Direct Gain 0 0.965871011626804 NA NA prediction 0.931742023253609 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153945465 chr1:153945465 synonymous SNV . 0 21 hm7G_associated_SNPs_39203 0 0 0 0 2 CREB3L4 chr1:153945448 3'AG 153945448 Downstream 18bp 36101 chr1 153945465 153945465 1 + C G LUSC 153945465 + 153945445 153945485 41 AAGGCAGAGGAGAGGGTCCTCAAGAAGGTCAGGAGGAAAAT AAGGCAGAGGAGAGGGTCCTGAAGAAGGTCAGGAGGAAAAT Direct Gain 0 0.965871011626804 NA NA prediction 0.931742023253609 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153945465 chr1:153945465 synonymous SNV . 0 21 hm7G_associated_SNPs_39203 0 0 0 0 2 CREB3L4 chr1:153945554 5'GT 153945554 Upstream 90bp 36102 chr4 190874240 190874240 1 + C G KIRC 190874240 + 190874220 190874260 41 TAGTTGATGAGGGCCCTAGTCCTCCAGAGCAGTTTACGGCT TAGTTGATGAGGGCCCTAGTGCTCCAGAGCAGTTTACGGCT Direct Gain 0 0.965725505459381 NA NA prediction 0.931451010918761 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190874240 chr4:190874240 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_39204 0 0 0 0 2 FRG1 chr4:190874223 3'AG 190874223 Downstream 18bp 36103 chr4 190874240 190874240 1 + C G KIRC 190874240 + 190874220 190874260 41 TAGTTGATGAGGGCCCTAGTCCTCCAGAGCAGTTTACGGCT TAGTTGATGAGGGCCCTAGTGCTCCAGAGCAGTTTACGGCT Direct Gain 0 0.965725505459381 NA NA prediction 0.931451010918761 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190874240 chr4:190874240 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_39204 0 0 0 0 2 FRG1 chr4:190874280 5'GT 190874280 Upstream 41bp 36104 chr2 187368929 187368929 1 + A G LUSC 187368929 + 187368909 187368949 41 GAAATTTCATTAGAAGATCTAATTGAGAGAGAGGTAACTGG GAAATTTCATTAGAAGATCTGATTGAGAGAGAGGTAACTGG Direct Gain 0 0.965613444485791 NA NA prediction 0.931226888971583 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187368929 chr2:187368929 synonymous SNV . 0 21 hm7G_associated_SNPs_39205 0 0 1 0 1 ZC3H15 chr2:187368941 5'GT 187368941 Upstream 13bp 36105 chrX 70524820 70524820 1 + A G UCEC 70524820 + 70524800 70524840 41 TTTGCTCCTCCTCAGGTCATAAACGTGGAGCAGAGCTCTGT TTTGCTCCTCCTCAGGTCATGAACGTGGAGCAGAGCTCTGT Direct Gain 0 0.965406519911828 NA NA prediction 0.930813039823655 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70524820 chrX:70524820 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39208 0 0 1 0 1 ITGB1BP2 chrX:70524815 3'AG 70524815 Downstream 6bp 36106 chr1 12820737 12820737 1 + C G BLCA 12820737 + 12820717 12820757 41 TATGGACTCTATGAGCAGCTCAAGCAGAGACAGCTCACACC TATGGACTCTATGAGCAGCTGAAGCAGAGACAGCTCACACC Direct Gain 0 0.965170059240493 NA NA prediction 0.930340118480987 Functional Gain - C1orf158 ENSG00000157330 CDS Human protein_coding chr1:12820737 chr1:12820737 synonymous SNV . 0 21 hm7G_associated_SNPs_39210 0 0 0 0 1 C1orf158 chr1:12820703 3'AG 12820703 Downstream 35bp 36107 chr20 21346252 21346252 1 + C G LUAD 21346252 + 21346232 21346272 41 ACCTAGTGACTGGGAAAAATCCAGCAATGGACGGCAGTGGA ACCTAGTGACTGGGAAAAATGCAGCAATGGACGGCAGTGGA Direct Gain 0 0.965110227186873 NA NA prediction 0.930220454373745 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21346252 chr20:21346252 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39211 0 0 1 0 2 XRN2 chr20:21346211 3'AG 21346211 Downstream 42bp 36108 chr20 21346252 21346252 1 + C G LUAD 21346252 + 21346232 21346272 41 ACCTAGTGACTGGGAAAAATCCAGCAATGGACGGCAGTGGA ACCTAGTGACTGGGAAAAATGCAGCAATGGACGGCAGTGGA Direct Gain 0 0.965110227186873 NA NA prediction 0.930220454373745 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21346252 chr20:21346252 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39211 0 0 1 0 2 XRN2 chr20:21346342 5'GT 21346342 Upstream 91bp 36109 chr9 119449639 119449639 1 + C G rs538918400 119449639 + 119449619 119449659 41 TGGGCTGCCGGCGGTGGACTCGTCGGAGCCGCGGGCGGTCA TGGGCTGCCGGCGGTGGACTGGTCGGAGCCGCGGGCGGTCA Direct Gain 0 0.965012986849256 NA NA prediction 0.930025973698513 Functional Gain - TRIM32 ENSG00000119401 UTR5 Human protein_coding chr9:119449639 chr9:119449639 . . 0 21 hm7G_associated_SNPs_39212 0 0 0 0 1 TRIM32 chr9:119449660 5'GT 119449660 Upstream 22bp 36110 chr11 119003611 119003611 1 + A G LUSC 119003611 + 119003591 119003631 41 ACCTCCAGAAGCACCTGGATACCCACAGCGAGGAGCCAGCC ACCTCCAGAAGCACCTGGATGCCCACAGCGAGGAGCCAGCC Direct Gain 0 0.964780319948305 NA NA prediction 0.929560639896609 Functional Gain - HINFP ENSG00000172273 CDS Human protein_coding chr11:119003611 chr11:119003611 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_39215 0 0 1 0 1 HINFP chr11:119003574 3'AG 119003574 Downstream 38bp 36111 chr11 63964989 63964989 1 + A G LIHC 63964989 + 63964969 63965009 41 ATACTTTGAAAAGGGCGACTACAATAAGTGCCGGGAGCTTT ATACTTTGAAAAGGGCGACTGCAATAAGTGCCGGGAGCTTT Direct Gain 0 0.964661487116704 NA NA prediction 0.929322974233408 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63964989 chr11:63964989 nonsynonymous SNV 0.972 4 21 hm7G_associated_SNPs_39216 0 0 1 0 2 STIP1 chr11:63964965 3'AG 63964965 Downstream 25bp 36112 chr11 63964989 63964989 1 + A G LIHC 63964989 + 63964969 63965009 41 ATACTTTGAAAAGGGCGACTACAATAAGTGCCGGGAGCTTT ATACTTTGAAAAGGGCGACTGCAATAAGTGCCGGGAGCTTT Direct Gain 0 0.964661487116704 NA NA prediction 0.929322974233408 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63964989 chr11:63964989 nonsynonymous SNV 0.972 4 21 hm7G_associated_SNPs_39216 0 0 1 0 2 STIP1 chr11:63965067 5'GT 63965067 Upstream 79bp 36113 chr14 67843196 67843196 1 + A G UCEC 67843196 + 67843176 67843216 41 TGTTGCTGAGGTGTTAGAATACACCAAGGATGAGCAGCTGG TGTTGCTGAGGTGTTAGAATGCACCAAGGATGAGCAGCTGG Direct Gain 0 0.964450946414975 NA NA prediction 0.928901892829951 Functional Gain - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67843196 chr14:67843196 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39218 0 0 1 0 1 EIF2S1 chr14:67843156 3'AG 67843156 Downstream 41bp 36114 chr1 26801077 26801077 1 + A G COAD 26801077 + 26801057 26801097 41 TTTCAGAAGGGAGAGAAGGTACCCAAAGGGAAAAAGGGAAA TTTCAGAAGGGAGAGAAGGTGCCCAAAGGGAAAAAGGGAAA Direct Gain 0 0.964418576652982 NA NA prediction 0.928837153305964 Functional Gain - HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26801077 chr1:26801077 synonymous SNV . 0 21 hm7G_associated_SNPs_39221 0 0 1 0 2 HMGN2 chr1:26801063 3'AG 26801063 Downstream 15bp 36115 chr1 26801077 26801077 1 + A G COAD 26801077 + 26801057 26801097 41 TTTCAGAAGGGAGAGAAGGTACCCAAAGGGAAAAAGGGAAA TTTCAGAAGGGAGAGAAGGTGCCCAAAGGGAAAAAGGGAAA Direct Gain 0 0.964418576652982 NA NA prediction 0.928837153305964 Functional Gain - HMGN2 ENSG00000198830 CDS Human protein_coding chr1:26801077 chr1:26801077 synonymous SNV . 0 21 hm7G_associated_SNPs_39221 0 0 1 0 2 HMGN2 chr1:26801158 5'GT 26801158 Upstream 82bp 36116 chr9 33276471 33276471 1 + A G SKCM 33276471 + 33276451 33276491 41 TAGGATTTACAAGACCAGCTAGAGGATATGATGGAAGATGC TAGGATTTACAAGACCAGCTGGAGGATATGATGGAAGATGC Direct Gain 0 0.964386321076277 NA NA prediction 0.928772642152554 Functional Gain - CHMP5 ENSG00000086065 CDS Human protein_coding chr9:33276471 chr9:33276471 synonymous SNV . 0 21 hm7G_associated_SNPs_39222 0 0 1 0 2 CHMP5 chr9:33276454 3'AG 33276454 Downstream 18bp 36117 chr9 33276471 33276471 1 + A G SKCM 33276471 + 33276451 33276491 41 TAGGATTTACAAGACCAGCTAGAGGATATGATGGAAGATGC TAGGATTTACAAGACCAGCTGGAGGATATGATGGAAGATGC Direct Gain 0 0.964386321076277 NA NA prediction 0.928772642152554 Functional Gain - CHMP5 ENSG00000086065 CDS Human protein_coding chr9:33276471 chr9:33276471 synonymous SNV . 0 21 hm7G_associated_SNPs_39222 0 0 1 0 2 CHMP5 chr9:33276562 5'GT 33276562 Upstream 92bp 36118 chr7 12680057 12680057 1 + C G STAD 12680057 + 12680037 12680077 41 TATTTACAAGAATGGAACATCAAAGAAAGGAGGTCAGGCAC TATTTACAAGAATGGAACATGAAAGAAAGGAGGTCAGGCAC Direct Gain 0 0.964369649300292 NA NA prediction 0.928739298600583 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12680057 chr7:12680057 stopgain 1.000 1 21 hm7G_associated_SNPs_39223 0 0 1 0 2 SCIN chr7:12679972 3'AG 12679972 Downstream 86bp 36119 chr7 12680057 12680057 1 + C G STAD 12680057 + 12680037 12680077 41 TATTTACAAGAATGGAACATCAAAGAAAGGAGGTCAGGCAC TATTTACAAGAATGGAACATGAAAGAAAGGAGGTCAGGCAC Direct Gain 0 0.964369649300292 NA NA prediction 0.928739298600583 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12680057 chr7:12680057 stopgain 1.000 1 21 hm7G_associated_SNPs_39223 0 0 1 0 2 SCIN chr7:12680142 5'GT 12680142 Upstream 86bp 36120 chr2 170374799 170374799 1 + C G rs138411167 170374799 + 170374779 170374819 41 TCCATGTTTGGAGTAGCAGTCCATAAAGGCAAAATTGTGAT TCCATGTTTGGAGTAGCAGTGCATAAAGGCAAAATTGTGAT Direct Gain 0 0.964332661617753 NA NA prediction 0.928665323235506 Functional Gain - KLHL41 ENSG00000163093;ENSG00000239474;ENSG00000251569 CDS Human other chr2:170374799 chr2:170374799 synonymous SNV . 0 21 hm7G_associated_SNPs_39225 0 0 0 0 2 KLHL41 chr2:170374700 3'AG 170374700 Downstream 100bp 36121 chr2 170374799 170374799 1 + C G rs138411167 170374799 + 170374779 170374819 41 TCCATGTTTGGAGTAGCAGTCCATAAAGGCAAAATTGTGAT TCCATGTTTGGAGTAGCAGTGCATAAAGGCAAAATTGTGAT Direct Gain 0 0.964332661617753 NA NA prediction 0.928665323235506 Functional Gain - KLHL41 ENSG00000163093;ENSG00000239474;ENSG00000251569 CDS Human other chr2:170374799 chr2:170374799 synonymous SNV . 0 21 hm7G_associated_SNPs_39225 0 0 0 0 2 KLHL41 chr2:170374885 5'GT 170374885 Upstream 87bp 36122 chr3 167508358 167508358 1 + A G UCEC 167508358 + 167508338 167508378 41 AAATGTAGCCGTGGCCAACTACATCAATAAGTGGGTGGAGA AAATGTAGCCGTGGCCAACTGCATCAATAAGTGGGTGGAGA Direct Gain 0 0.964055987611718 NA NA prediction 0.928111975223436 Functional Gain - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167508358 chr3:167508358 nonsynonymous SNV 0.033 1 21 hm7G_associated_SNPs_39226 0 0 0 0 1 SERPINI1 chr3:167508390 5'GT 167508390 Upstream 33bp 36123 chr6 121768048 121768048 1 + A G UCEC 121768048 + 121768028 121768068 41 ACAAGGTTCAAGCCTACTCAACTGCTGGAGGGAAGGTGTGG ACAAGGTTCAAGCCTACTCAGCTGCTGGAGGGAAGGTGTGG Direct Gain 0 0.963965512945292 NA NA prediction 0.927931025890584 Functional Gain - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121768048 chr6:121768048 nonsynonymous SNV 0.932 5 21 hm7G_associated_SNPs_39228 0 0 0 0 2 GJA1 chr6:121767978 3'AG 121767978 Downstream 71bp 36124 chr6 121768048 121768048 1 + A G UCEC 121768048 + 121768028 121768068 41 ACAAGGTTCAAGCCTACTCAACTGCTGGAGGGAAGGTGTGG ACAAGGTTCAAGCCTACTCAGCTGCTGGAGGGAAGGTGTGG Direct Gain 0 0.963965512945292 NA NA prediction 0.927931025890584 Functional Gain - GJA1 ENSG00000152661 CDS Human protein_coding chr6:121768048 chr6:121768048 nonsynonymous SNV 0.932 5 21 hm7G_associated_SNPs_39228 0 0 0 0 2 GJA1 chr6:121768070 5'GT 121768070 Upstream 23bp 36125 chr5 56212663 56212663 1 + T G HNSC 56212663 + 56212643 56212683 41 CCACTTCGATGTGTTGTTCTTGTCGCACTTAGGGACATCAA CCACTTCGATGTGTTGTTCTGGTCGCACTTAGGGACATCAA Direct Gain 0 0.963885801964928 NA NA prediction 0.927771603929856 Functional Gain - SETD9 ENSG00000155542 CDS Human protein_coding chr5:56212663 chr5:56212663 synonymous SNV . 0 21 hm7G_associated_SNPs_39231 0 0 1 0 1 SETD9 chr5:56212642 3'AG 56212642 Downstream 22bp 36126 chr1 109235458 109235458 1 + A G UCEC 109235458 + 109235438 109235478 41 GCTCTACGAGCTCAAGACCTACCACGAGGTGGTGGACGAGA GCTCTACGAGCTCAAGACCTGCCACGAGGTGGTGGACGAGA Direct Gain 0 0.963864415256267 NA NA prediction 0.927728830512534 Functional Gain - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109235458 chr1:109235458 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39232 0 0 1 0 1 PRPF38B chr1:109235489 5'GT 109235489 Upstream 32bp 36127 chr11 64009964 64009964 1 + C G HNSC 64009964 + 64009944 64009984 41 AGGAAGCTGCAGATCGGGGTCAAGAAGCGGGTGGACCACTG AGGAAGCTGCAGATCGGGGTGAAGAAGCGGGTGGACCACTG Direct Gain 0 0.963844806663286 NA NA prediction 0.927689613326572 Functional Gain - FKBP2 ENSG00000173486 CDS Human protein_coding chr11:64009964 chr11:64009964 synonymous SNV . 0 21 hm7G_associated_SNPs_39233 0 0 1 0 1 FKBP2 chr11:64010030 5'GT 64010030 Upstream 67bp 36128 chr17 37898826 37898826 1 + C G CESC 37898826 + 37898806 37898846 41 CTTCTTGCCACAGGAAACTTCGAGAGGAGGAGAGGCGTGCC CTTCTTGCCACAGGAAACTTGGAGAGGAGGAGAGGCGTGCC Direct Gain 0 0.963709914293237 NA NA prediction 0.927419828586474 Functional Gain - GRB7 ENSG00000141738 CDS Human protein_coding chr17:37898826 chr17:37898826 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_39236 0 0 1 0 1 GRB7 chr17:37898819 3'AG 37898819 Downstream 8bp 36129 chr6 131894469 131894469 1 + C G LUAD 131894469 + 131894449 131894489 41 GATTATTGGAGCTCCTTTCTCAAAGGGACAGGTAAGGAAAA GATTATTGGAGCTCCTTTCTGAAAGGGACAGGTAAGGAAAA Direct Gain 0 0.963583234248435 NA NA prediction 0.927166468496871 Functional Gain - ARG1 ENSG00000118520 CDS Human protein_coding chr6:131894469 chr6:131894469 stopgain 0.995 1 21 hm7G_associated_SNPs_39239 0 0 0 0 1 ARG1 chr6:131894479 5'GT 131894479 Upstream 11bp 36130 chr12 105388290 105388290 1 + C G BLCA 105388290 + 105388270 105388310 41 TGAGATGAATCAGTCGGATTCAAAAGAAGTGGACAGTTCAG TGAGATGAATCAGTCGGATTGAAAAGAAGTGGACAGTTCAG Direct Gain 0 0.963304174901719 NA NA prediction 0.926608349803438 Functional Gain - C12orf45 ENSG00000151131 CDS Human protein_coding chr12:105388290 chr12:105388290 stopgain 0.961 0 21 hm7G_associated_SNPs_39242 0 0 1 0 1 C12orf45 chr12:105388256 3'AG 105388256 Downstream 35bp 36131 chr17 32583295 32583295 1 + C G BLCA 32583295 + 32583275 32583315 41 CTTCACCAATAGGAAGATCTCAGTGCAGAGGCTCGCGAGCT CTTCACCAATAGGAAGATCTGAGTGCAGAGGCTCGCGAGCT Direct Gain 0 0.963224500675204 NA NA prediction 0.926449001350407 Functional Gain - CCL2 ENSG00000108691 CDS Human protein_coding chr17:32583295 chr17:32583295 stopgain 0.002 0 21 hm7G_associated_SNPs_39244 0 0 0 0 2 CCL2 chr17:32583241 3'AG 32583241 Downstream 55bp 36132 chr17 32583295 32583295 1 + C G BLCA 32583295 + 32583275 32583315 41 CTTCACCAATAGGAAGATCTCAGTGCAGAGGCTCGCGAGCT CTTCACCAATAGGAAGATCTGAGTGCAGAGGCTCGCGAGCT Direct Gain 0 0.963224500675204 NA NA prediction 0.926449001350407 Functional Gain - CCL2 ENSG00000108691 CDS Human protein_coding chr17:32583295 chr17:32583295 stopgain 0.002 0 21 hm7G_associated_SNPs_39244 0 0 0 0 2 CCL2 chr17:32583358 5'GT 32583358 Upstream 64bp 36133 chr12 101876659 101876659 1 + C G rs149463971 101876659 + 101876639 101876679 41 CTGGTACAACCCACTCTTCTCCAGCAAAAGGGGGGAAAAGG CTGGTACAACCCACTCTTCTGCAGCAAAAGGGGGGAAAAGG Direct Gain 0 0.963218520876511 NA NA prediction 0.926437041753023 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101876659 chr12:101876659 synonymous SNV . 0 21 hm7G_associated_SNPs_39245 0 0 0 0 2 SPIC chr12:101876570 3'AG 101876570 Downstream 90bp 36134 chr12 101876659 101876659 1 + C G rs149463971 101876659 + 101876639 101876679 41 CTGGTACAACCCACTCTTCTCCAGCAAAAGGGGGGAAAAGG CTGGTACAACCCACTCTTCTGCAGCAAAAGGGGGGAAAAGG Direct Gain 0 0.963218520876511 NA NA prediction 0.926437041753023 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101876659 chr12:101876659 synonymous SNV . 0 21 hm7G_associated_SNPs_39245 0 0 0 0 2 SPIC chr12:101876678 5'GT 101876678 Upstream 20bp 36135 chr16 75682407 75682407 1 + C G CESC 75682407 + 75682387 75682427 41 AGCCCCTCCTCCCAGAAGCTCAAGCGGAAGGCGGAGGAGGA AGCCCCTCCTCCCAGAAGCTGAAGCGGAAGGCGGAGGAGGA Direct Gain 0 0.963124002433522 NA NA prediction 0.926248004867045 Functional Gain - TERF2IP ENSG00000166848 CDS Human protein_coding chr16:75682407 chr16:75682407 synonymous SNV . 0 21 hm7G_associated_SNPs_39247 0 0 1 0 1 TERF2IP chr16:75682450 5'GT 75682450 Upstream 44bp 36136 chr16 29814096 29814096 1 + A G HNSC 29814096 + 29814076 29814116 41 CTTTTTCTGCTCAGCCCCCTACAGAAGCTAAGCAGCATGGA CTTTTTCTGCTCAGCCCCCTGCAGAAGCTAAGCAGCATGGA Direct Gain 0 0.963117631168751 NA NA prediction 0.926235262337501 Functional Gain - KIF22 ENSG00000079616 CDS Human protein_coding chr16:29814096 chr16:29814096 synonymous SNV . 0 21 hm7G_associated_SNPs_39248 0 0 1 0 1 KIF22 chr16:29814090 3'AG 29814090 Downstream 7bp 36137 chr6 160188185 160188185 1 + T G LUSC 160188185 + 160188165 160188205 41 GGGATAGGAGACTCCAGCATTGTGGTTGCAGGAGGCATGGA GGGATAGGAGACTCCAGCATGGTGGTTGCAGGAGGCATGGA Direct Gain 0 0.962906051514951 NA NA prediction 0.925812103029902 Functional Gain - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160188185 chr6:160188185 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39250 0 0 1 0 1 ACAT2 chr6:160188218 5'GT 160188218 Upstream 34bp 36138 chr22 38609893 38609893 1 + A G LUSC 38609893 + 38609873 38609913 41 CCCCTATCCAGCAAAGCTCTAAAGGTGAGGAGGCAGCCTCT CCCCTATCCAGCAAAGCTCTGAAGGTGAGGAGGCAGCCTCT Direct Gain 0 0.96285102602562 NA NA prediction 0.92570205205124 Functional Gain - MAFF ENSG00000185022 CDS Human protein_coding chr22:38609893 chr22:38609893 synonymous SNV . 0 21 hm7G_associated_SNPs_39251 0 0 1 0 2 MAFF chr22:38609830 3'AG 38609830 Downstream 64bp 36139 chr22 38609893 38609893 1 + A G LUSC 38609893 + 38609873 38609913 41 CCCCTATCCAGCAAAGCTCTAAAGGTGAGGAGGCAGCCTCT CCCCTATCCAGCAAAGCTCTGAAGGTGAGGAGGCAGCCTCT Direct Gain 0 0.96285102602562 NA NA prediction 0.92570205205124 Functional Gain - MAFF ENSG00000185022 CDS Human protein_coding chr22:38609893 chr22:38609893 synonymous SNV . 0 21 hm7G_associated_SNPs_39251 0 0 1 0 2 MAFF chr22:38609896 5'GT 38609896 Upstream 4bp 36140 chr1 45223802 45223802 1 + A G LUSC 45223802 + 45223782 45223822 41 TGTGACATTCTTCGAGATCTACAATGGGAAGGTAGCTGGCA TGTGACATTCTTCGAGATCTGCAATGGGAAGGTAGCTGGCA Direct Gain 0 0.962776478864851 NA NA prediction 0.925552957729701 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45223802 chr1:45223802 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39253 0 0 1 0 2 KIF2C chr1:45223721 3'AG 45223721 Downstream 82bp 36141 chr1 45223802 45223802 1 + A G LUSC 45223802 + 45223782 45223822 41 TGTGACATTCTTCGAGATCTACAATGGGAAGGTAGCTGGCA TGTGACATTCTTCGAGATCTGCAATGGGAAGGTAGCTGGCA Direct Gain 0 0.962776478864851 NA NA prediction 0.925552957729701 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45223802 chr1:45223802 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39253 0 0 1 0 2 KIF2C chr1:45223812 5'GT 45223812 Upstream 11bp 36142 chr6 109471409 109471409 1 + A G STAD 109471409 + 109471389 109471429 41 AAGAGAATGGTTCTCAACGTAGAGCGAGAAAAGAACATGAT AAGAGAATGGTTCTCAACGTGGAGCGAGAAAAGAACATGAT Direct Gain 0 0.962620980045802 NA NA prediction 0.925241960091604 Functional Gain - CEP57L1 ENSG00000183137 CDS Human protein_coding chr6:109471409 chr6:109471409 synonymous SNV . 0 21 hm7G_associated_SNPs_39255 0 0 1 0 2 CEP57L1 chr6:109471321 3'AG 109471321 Downstream 89bp 36143 chr6 109471409 109471409 1 + A G STAD 109471409 + 109471389 109471429 41 AAGAGAATGGTTCTCAACGTAGAGCGAGAAAAGAACATGAT AAGAGAATGGTTCTCAACGTGGAGCGAGAAAAGAACATGAT Direct Gain 0 0.962620980045802 NA NA prediction 0.925241960091604 Functional Gain - CEP57L1 ENSG00000183137 CDS Human protein_coding chr6:109471409 chr6:109471409 synonymous SNV . 0 21 hm7G_associated_SNPs_39255 0 0 1 0 2 CEP57L1 chr6:109471442 5'GT 109471442 Upstream 34bp 36144 chr20 61430850 61430850 1 + C G LUAD 61430850 + 61430830 61430870 41 GGGGAAAGCATCAGAAAAATCCAGCAAAGACAAAGAGAAGA GGGGAAAGCATCAGAAAAATGCAGCAAAGACAAAGAGAAGA Direct Gain 0 0.962609567166009 NA NA prediction 0.925219134332018 Functional Gain - MRGBP ENSG00000101189 CDS Human protein_coding chr20:61430850 chr20:61430850 nonsynonymous SNV 0.982 1 21 hm7G_associated_SNPs_39256 0 0 1 0 1 MRGBP chr20:61430808 3'AG 61430808 Downstream 43bp 36145 chr5 53839043 53839043 1 + C G rs143448359 53839043 + 53839023 53839063 41 GTCAAGGAGAGTAGGCGACACGTGGAGGAAGGGAAGATGGA GTCAAGGAGAGTAGGCGACAGGTGGAGGAAGGGAAGATGGA Direct Gain 0 0.962432050722733 NA NA prediction 0.924864101445467 Functional Gain - SNX18 ENSG00000178996 CDS Human protein_coding chr5:53839043 chr5:53839043 nonsynonymous SNV 0.971 0 21 hm7G_associated_SNPs_39258 0 0 1 0 1 SNX18 chr5:53839009 3'AG 53839009 Downstream 35bp 36146 chr2 106471537 106471537 1 + T G UCEC 106471537 + 106471517 106471557 41 AAGATGACAGAAGAAGTTATTGTGATAGCCAAGTGGGACTA AAGATGACAGAAGAAGTTATGGTGATAGCCAAGTGGGACTA Direct Gain 0 0.962403095776412 NA NA prediction 0.924806191552825 Functional Gain - NCK2 ENSG00000071051 CDS Human antisense chr2:106471537 chr2:106471537 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_39259 0 0 1 0 1 NCK2 chr2:106471504 3'AG 106471504 Downstream 34bp 36147 chr12 112229906 112229906 1 + C G BLCA 112229906 + 112229886 112229926 41 GCTGCTGGGAGCAGCAACCTCAAGAGAGTGACCTTGGAGCT GCTGCTGGGAGCAGCAACCTGAAGAGAGTGACCTTGGAGCT Direct Gain 0 0.962271055488422 NA NA prediction 0.924542110976845 Functional Gain - ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112229906 chr12:112229906 synonymous SNV . 0 21 hm7G_associated_SNPs_39260 0 0 1 0 2 ALDH2 chr12:112229865 3'AG 112229865 Downstream 42bp 36148 chr12 112229906 112229906 1 + C G BLCA 112229906 + 112229886 112229926 41 GCTGCTGGGAGCAGCAACCTCAAGAGAGTGACCTTGGAGCT GCTGCTGGGAGCAGCAACCTGAAGAGAGTGACCTTGGAGCT Direct Gain 0 0.962271055488422 NA NA prediction 0.924542110976845 Functional Gain - ALDH2 ENSG00000111275 CDS Human protein_coding chr12:112229906 chr12:112229906 synonymous SNV . 0 21 hm7G_associated_SNPs_39260 0 0 1 0 2 ALDH2 chr12:112229967 5'GT 112229967 Upstream 62bp 36149 chr4 88731792 88731792 1 + C G BLCA 88731792 + 88731772 88731812 41 AGGAGAAAACAATGAAGAATCGAATGAAGATGAAGACTCTG AGGAGAAAACAATGAAGAATGGAATGAAGATGAAGACTCTG Direct Gain 0 0.962248153053512 NA NA prediction 0.924496306107025 Functional Gain - IBSP ENSG00000029559 CDS Human protein_coding chr4:88731792 chr4:88731792 nonsynonymous SNV 0.550 3 21 hm7G_associated_SNPs_39261 0 0 0 0 1 IBSP chr4:88731758 3'AG 88731758 Downstream 35bp 36150 chr18 56897662 56897662 1 + C G BLCA 56897662 + 56897642 56897682 41 GACTCTCTGCTCCAGGTTCTCAACGTGAAGGAAGGAACCCC GACTCTCTGCTCCAGGTTCTGAACGTGAAGGAAGGAACCCC Direct Gain 0 0.962219063604332 NA NA prediction 0.924438127208664 Functional Gain - GRP ENSG00000134443 CDS Human protein_coding chr18:56897662 chr18:56897662 nonsynonymous SNV 0.682 0 21 hm7G_associated_SNPs_39262 0 0 0 0 2 GRP chr18:56897636 3'AG 56897636 Downstream 27bp 36151 chr18 56897662 56897662 1 + C G BLCA 56897662 + 56897642 56897682 41 GACTCTCTGCTCCAGGTTCTCAACGTGAAGGAAGGAACCCC GACTCTCTGCTCCAGGTTCTGAACGTGAAGGAAGGAACCCC Direct Gain 0 0.962219063604332 NA NA prediction 0.924438127208664 Functional Gain - GRP ENSG00000134443 CDS Human protein_coding chr18:56897662 chr18:56897662 nonsynonymous SNV 0.682 0 21 hm7G_associated_SNPs_39262 0 0 0 0 2 GRP chr18:56897657 3'AG 56897657 Downstream 6bp 36152 chr4 187173216 187173216 1 + C G LUSC 187173216 + 187173196 187173236 41 CATTGTTGGAGGAACAAACTCTTCTTGGGGAGAGTGGCCCT CATTGTTGGAGGAACAAACTGTTCTTGGGGAGAGTGGCCCT Direct Gain 0 0.962186252345785 NA NA prediction 0.924372504691571 Functional Gain - KLKB1 ENSG00000164344 CDS Human protein_coding chr4:187173216 chr4:187173216 nonsynonymous SNV 0.976 4 21 hm7G_associated_SNPs_39264 0 0 0 0 1 KLKB1 chr4:187173171 3'AG 187173171 Downstream 46bp 36153 chrX 138619222 138619222 1 + A G UCEC 138619222 + 138619202 138619242 41 TGAATCGGCCAAAGAGGTATAATTCAGGTAAATTGGAAGAG TGAATCGGCCAAAGAGGTATGATTCAGGTAAATTGGAAGAG Direct Gain 0 0.962002586773015 NA NA prediction 0.92400517354603 Functional Gain - F9 ENSG00000101981 CDS Human protein_coding chrX:138619222 chrX:138619222 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39265 0 0 0 0 1 F9 chrX:138619169 3'AG 138619169 Downstream 54bp 36154 chr22 31829895 31829895 1 + C G LUSC 31829895 + 31829875 31829915 41 TCTCTGTGAAACACAATCCTCAGAAAGTGGGTAAAGACCAT TCTCTGTGAAACACAATCCTGAGAAAGTGGGTAAAGACCAT Direct Gain 0 0.961906759375011 NA NA prediction 0.923813518750022 Functional Gain - DRG1 ENSG00000185721 CDS Human protein_coding chr22:31829895 chr22:31829895 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39268 0 0 1 0 1 DRG1 chr22:31829858 3'AG 31829858 Downstream 38bp 36155 chr15 58471376 58471376 1 + C G LUSC 58471376 + 58471356 58471396 41 CGTCTTTGCCATCTTTGACTCCAGAAACTTGGGAGCCCCCA CGTCTTTGCCATCTTTGACTGCAGAAACTTGGGAGCCCCCA Direct Gain 0 0.961851078377603 NA NA prediction 0.923702156755206 Functional Gain - AQP9 ENSG00000103569 CDS Human protein_coding chr15:58471376 chr15:58471376 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_39271 0 0 0 0 1 AQP9 chr15:58471327 3'AG 58471327 Downstream 50bp 36156 chr1 220864046 220864046 1 + A G COAD 220864046 + 220864026 220864066 41 CCGGAGGAAGCTGAAGAAGTACGGCAAGGTAGGGGCCCTGC CCGGAGGAAGCTGAAGAAGTGCGGCAAGGTAGGGGCCCTGC Direct Gain 0 0.961845486443646 NA NA prediction 0.923690972887293 Functional Gain - C1orf115 ENSG00000162817 CDS Human protein_coding chr1:220864046 chr1:220864046 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_39272 0 0 1 0 1 C1orf115 chr1:220864053 5'GT 220864053 Upstream 8bp 36157 chr14 31191711 31191711 1 + T G SKCM 31191711 + 31191691 31191731 41 GCATTTTAGGCCATTGTTTTTGTGGTGGGAGGAGGCAACTA GCATTTTAGGCCATTGTTTTGGTGGTGGGAGGAGGCAACTA Direct Gain 0 0.961799047928735 NA NA prediction 0.923598095857471 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31191711 chr14:31191711 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39273 0 0 1 0 2 SCFD1 chr14:31191700 3'AG 31191700 Downstream 12bp 36158 chr14 31191711 31191711 1 + T G SKCM 31191711 + 31191691 31191731 41 GCATTTTAGGCCATTGTTTTTGTGGTGGGAGGAGGCAACTA GCATTTTAGGCCATTGTTTTGGTGGTGGGAGGAGGCAACTA Direct Gain 0 0.961799047928735 NA NA prediction 0.923598095857471 Functional Gain - SCFD1 ENSG00000092108 CDS Human protein_coding chr14:31191711 chr14:31191711 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39273 0 0 1 0 2 SCFD1 chr14:31191765 5'GT 31191765 Upstream 55bp 36159 chr1 10460553 10460553 1 + C G STAD 10460553 + 10460533 10460573 41 GTCCCTGAAAGAGATGGTCTCCAAGCTGAAGAAGCCCCGGC GTCCCTGAAAGAGATGGTCTGCAAGCTGAAGAAGCCCCGGC Direct Gain 0 0.961792638709215 NA NA prediction 0.92358527741843 Functional Gain - PGD ENSG00000142657 CDS Human protein_coding chr1:10460553 chr1:10460553 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39274 0 0 1 0 1 PGD chr1:10460629 5'GT 10460629 Upstream 77bp 36160 chr1 174977775 174977775 1 + A G UCEC 174977775 + 174977755 174977795 41 ATACAGTTCTTATATTGTGTAGAAAGAAAGTGGAAAACACA ATACAGTTCTTATATTGTGTGGAAAGAAAGTGGAAAACACA Direct Gain 0 0.961549159157114 NA NA prediction 0.923098318314228 Functional Gain - CACYBP ENSG00000116161 CDS Human protein_coding chr1:174977775 chr1:174977775 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39277 0 0 1 0 1 CACYBP chr1:174977745 3'AG 174977745 Downstream 31bp 36161 chr2 171702294 171702294 1 + A G COAD 171702294 + 171702274 171702314 41 TTTTGATAAAGTGCAATGAAAGGTAGGCAGGGGAGGGTGAA TTTTGATAAAGTGCAATGAAGGGTAGGCAGGGGAGGGTGAA Direct Gain 0 0.961517310015621 NA NA prediction 0.923034620031243 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171702294 chr2:171702294 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39278 0 0 0 0 1 GAD1 chr2:171702295 5'GT 171702295 Upstream 2bp 36162 chr2 73901043 73901043 1 + A G ACC 73901043 + 73901023 73901063 41 AAAGCTGCAGAGCATGTTAAAGAGCGAGCGGGATGCGCTAT AAAGCTGCAGAGCATGTTAAGGAGCGAGCGGGATGCGCTAT Direct Gain 0 0.961388752587213 NA NA prediction 0.922777505174426 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73901043 chr2:73901043 . . 0 21 hm7G_associated_SNPs_39279 0 0 0 0 1 ALMS1P1 chr2:73901123 5'GT 73901123 Upstream 81bp 36163 chr2 171675139 171675139 1 + C G CESC 171675139 + 171675119 171675159 41 ATCTTCGTCCGCAACCTCCTCGAACGCGGGAGCGGACCCCA ATCTTCGTCCGCAACCTCCTGGAACGCGGGAGCGGACCCCA Direct Gain 0 0.961302321804408 NA NA prediction 0.922604643608816 Functional Gain - GAD1 ENSG00000128683 CDS Human protein_coding chr2:171675139 chr2:171675139 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_39280 0 0 1 0 1 GAD1 chr2:171675183 5'GT 171675183 Upstream 45bp 36164 chr21 45563153 45563153 1 + C G LUAD 45563153 + 45563133 45563173 41 GTCGAGGTGACTGTGGGCCACGAGCAGGAGGAAGGTGGCAA GTCGAGGTGACTGTGGGCCAGGAGCAGGAGGAAGGTGGCAA Direct Gain 0 0.961135681736577 NA NA prediction 0.922271363473154 Functional Gain - C21orf33 ENSG00000160221 CDS Human protein_coding chr21:45563153 chr21:45563153 nonsynonymous SNV 0.963 1 21 hm7G_associated_SNPs_39282 0 0 1 0 1 C21orf33 chr21:45563087 3'AG 45563087 Downstream 67bp 36165 chr10 94836731 94836731 1 + T G UCEC 94836731 + 94836711 94836751 41 CTTTTGCAGGGATACCAGATTCCCAAGGGCTGGAATGTTAT CTTTTGCAGGGATACCAGATGCCCAAGGGCTGGAATGTTAT Direct Gain 0 0.961035171914146 NA NA prediction 0.922070343828292 Functional Gain - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94836731 chr10:94836731 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39283 0 0 1 0 1 CYP26A1 chr10:94836720 3'AG 94836720 Downstream 12bp 36166 chr17 61886238 61886238 1 + A G LUSC 61886238 + 61886218 61886258 41 TCTTCGATCAGTGGCCGTATATGGAGGAGGGAGTATGTGGG TCTTCGATCAGTGGCCGTATGTGGAGGAGGGAGTATGTGGG Direct Gain 0 0.960957413653771 NA NA prediction 0.921914827307542 Functional Gain - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61886238 chr17:61886238 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39284 0 0 1 0 2 DDX42 chr17:61886180 3'AG 61886180 Downstream 59bp 36167 chr17 61886238 61886238 1 + A G LUSC 61886238 + 61886218 61886258 41 TCTTCGATCAGTGGCCGTATATGGAGGAGGGAGTATGTGGG TCTTCGATCAGTGGCCGTATGTGGAGGAGGGAGTATGTGGG Direct Gain 0 0.960957413653771 NA NA prediction 0.921914827307542 Functional Gain - DDX42 ENSG00000198231 CDS Human protein_coding chr17:61886238 chr17:61886238 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39284 0 0 1 0 2 DDX42 chr17:61886308 5'GT 61886308 Upstream 71bp 36168 chr22 21241976 21241976 1 + C G rs141934766 21241976 + 21241956 21241996 41 TCCTCCTGCAGATGAGCTGTCCATGGGACTGGGTCGTCTGA TCCTCCTGCAGATGAGCTGTGCATGGGACTGGGTCGTCTGA Direct Gain 0 0.960927921550985 NA NA prediction 0.921855843101971 Functional Gain - SNAP29 ENSG00000099940 CDS Human protein_coding chr22:21241976 chr22:21241976 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_39285 0 0 1 0 1 SNAP29 chr22:21241967 3'AG 21241967 Downstream 10bp 36169 chr16 30770756 30770756 1 - G C BLCA 30770756 - 30770736 30770776 41 CCTCCTTTCAGCATCGACCTCTTCAAAGAGGAACAGCTGCT CCTCCTTTCAGCATCGACCTGTTCAAAGAGGAACAGCTGCT Direct Gain 0 0.960867230152683 NA NA prediction 0.921734460305367 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770756 chr16:30770756 synonymous SNV . 0 21 hm7G_associated_SNPs_39286 0 0 0 0 2 CCDC189 chr16:30770663 5'GT 30770663 Upstream 94bp 36170 chr16 30770756 30770756 1 - G C BLCA 30770756 - 30770736 30770776 41 CCTCCTTTCAGCATCGACCTCTTCAAAGAGGAACAGCTGCT CCTCCTTTCAGCATCGACCTGTTCAAAGAGGAACAGCTGCT Direct Gain 0 0.960867230152683 NA NA prediction 0.921734460305367 Functional Gain - CCDC189 ENSG00000196118 CDS Human protein_coding chr16:30770756 chr16:30770756 synonymous SNV . 0 21 hm7G_associated_SNPs_39286 0 0 0 0 2 CCDC189 chr16:30770779 3'AG 30770779 Downstream 24bp 36171 chr2 204737449 204737449 1 + C G BRCA 204737449 + 204737429 204737469 41 AGCTAAAGAAAAGAAGCCCTCTTACAACAGGGGTCTATGTG AGCTAAAGAAAAGAAGCCCTGTTACAACAGGGGTCTATGTG Direct Gain 0 0.960827493386964 NA NA prediction 0.921654986773928 Functional Gain - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204737449 chr2:204737449 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_39287 0 0 0 0 1 CTLA4 chr2:204737431 3'AG 204737431 Downstream 19bp 36172 chr22 44384997 44384997 1 + A G PAAD 44384997 + 44384977 44385017 41 CCTCCTTTGCTTAGGAGACTACCTAGGTGGAGAAGCGTACT CCTCCTTTGCTTAGGAGACTGCCTAGGTGGAGAAGCGTACT Direct Gain 0 0.960808873701542 NA NA prediction 0.921617747403084 Functional Gain - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44384997 chr22:44384997 nonsynonymous SNV 0.958 2 21 hm7G_associated_SNPs_39288 0 0 1 0 1 SAMM50 chr22:44384991 3'AG 44384991 Downstream 7bp 36173 chr5 147693745 147693745 1 + A G UCEC 147693745 + 147693725 147693765 41 ACCAGTTTGTGGTTCTGACTACATCACCTATGGGAATGAAT ACCAGTTTGTGGTTCTGACTGCATCACCTATGGGAATGAAT Direct Gain 0 0.960722094266318 NA NA prediction 0.921444188532636 Functional Gain - SPINK7 ENSG00000145879 CDS Human protein_coding chr5:147693745 chr5:147693745 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_39290 0 0 0 0 2 SPINK7 chr5:147693663 3'AG 147693663 Downstream 83bp 36174 chr5 147693745 147693745 1 + A G UCEC 147693745 + 147693725 147693765 41 ACCAGTTTGTGGTTCTGACTACATCACCTATGGGAATGAAT ACCAGTTTGTGGTTCTGACTGCATCACCTATGGGAATGAAT Direct Gain 0 0.960722094266318 NA NA prediction 0.921444188532636 Functional Gain - SPINK7 ENSG00000145879 CDS Human protein_coding chr5:147693745 chr5:147693745 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_39290 0 0 0 0 2 SPINK7 chr5:147693787 5'GT 147693787 Upstream 43bp 36175 chr6 37442313 37442313 1 + A G LUSC 37442313 + 37442293 37442333 41 CCTGTAGAAATCCCAGATCTACACATGGGATGGCCGCCAGT CCTGTAGAAATCCCAGATCTGCACATGGGATGGCCGCCAGT Direct Gain 0 0.960671191678445 NA NA prediction 0.92134238335689 Functional Gain - CMTR1 ENSG00000137200 CDS Human protein_coding chr6:37442313 chr6:37442313 nonsynonymous SNV 0.987 4 21 hm7G_associated_SNPs_39292 0 0 1 0 1 CMTR1 chr6:37442300 3'AG 37442300 Downstream 14bp 36176 chr1 151237665 151237665 1 + C G HNSC 151237665 + 151237645 151237685 41 GTGAAACTGGCTAAACGCCTCAAGAAGGAGAAAGTAAATGT GTGAAACTGGCTAAACGCCTGAAGAAGGAGAAAGTAAATGT Direct Gain 0 0.960623882088328 NA NA prediction 0.921247764176656 Functional Gain - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237665 chr1:151237665 synonymous SNV . 0 21 hm7G_associated_SNPs_39293 0 0 1 0 2 PSMD4 chr1:151237642 3'AG 151237642 Downstream 24bp 36177 chr1 151237665 151237665 1 + C G HNSC 151237665 + 151237645 151237685 41 GTGAAACTGGCTAAACGCCTCAAGAAGGAGAAAGTAAATGT GTGAAACTGGCTAAACGCCTGAAGAAGGAGAAAGTAAATGT Direct Gain 0 0.960623882088328 NA NA prediction 0.921247764176656 Functional Gain - PSMD4 ENSG00000159352 CDS Human protein_coding chr1:151237665 chr1:151237665 synonymous SNV . 0 21 hm7G_associated_SNPs_39293 0 0 1 0 2 PSMD4 chr1:151237710 5'GT 151237710 Upstream 46bp 36178 chr1 16101285 16101285 1 + T G STAD 16101285 + 16101265 16101305 41 GGTGTACTGCCTGGACGACTTCTACAGGTACGAGAAGGGTT GGTGTACTGCCTGGACGACTGCTACAGGTACGAGAAGGGTT Direct Gain 0 0.960570841990336 NA NA prediction 0.921141683980671 Functional Gain - FBLIM1 ENSG00000162458 CDS Human protein_coding chr1:16101285 chr1:16101285 nonsynonymous SNV 0.978 5 21 hm7G_associated_SNPs_39294 0 0 1 1 1 FBLIM1 chr1:16101291 5'GT 16101291 Upstream 7bp 36179 chr6 109471403 109471403 1 + C G LUSC 109471403 + 109471383 109471423 41 TATACAAAGAGAATGGTTCTCAACGTAGAGCGAGAAAAGAA TATACAAAGAGAATGGTTCTGAACGTAGAGCGAGAAAAGAA Direct Gain 0 0.960483884578708 NA NA prediction 0.920967769157416 Functional Gain - CEP57L1 ENSG00000183137 CDS Human protein_coding chr6:109471403 chr6:109471403 synonymous SNV . 0 21 hm7G_associated_SNPs_39296 0 0 1 0 2 CEP57L1 chr6:109471321 3'AG 109471321 Downstream 83bp 36180 chr6 109471403 109471403 1 + C G LUSC 109471403 + 109471383 109471423 41 TATACAAAGAGAATGGTTCTCAACGTAGAGCGAGAAAAGAA TATACAAAGAGAATGGTTCTGAACGTAGAGCGAGAAAAGAA Direct Gain 0 0.960483884578708 NA NA prediction 0.920967769157416 Functional Gain - CEP57L1 ENSG00000183137 CDS Human protein_coding chr6:109471403 chr6:109471403 synonymous SNV . 0 21 hm7G_associated_SNPs_39296 0 0 1 0 2 CEP57L1 chr6:109471442 5'GT 109471442 Upstream 40bp 36181 chr2 73447796 73447796 1 + A G UCEC 73447796 + 73447776 73447816 41 TCCCACCTAACAGGTGATGTACTGCAGTGCAGAATGTCGGT TCCCACCTAACAGGTGATGTGCTGCAGTGCAGAATGTCGGT Direct Gain 0 0.960440918487159 NA NA prediction 0.920881836974319 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73447796 chr2:73447796 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39298 0 0 1 0 1 SMYD5 chr2:73447789 3'AG 73447789 Downstream 8bp 36182 chr5 167937649 167937649 1 + A G rs34723836 167937649 + 167937629 167937669 41 GATCTTCTGGGAGAAGGACTAAAACGATCCATGGACAAGTT GATCTTCTGGGAGAAGGACTGAAACGATCCATGGACAAGTT Direct Gain 0 0.960393298890583 NA NA prediction 0.920786597781167 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167937649 chr5:167937649 synonymous SNV . 0 21 hm7G_associated_SNPs_39299 0 0 1 0 2 RARS chr5:167937586 3'AG 167937586 Downstream 64bp 36183 chr5 167937649 167937649 1 + A G rs34723836 167937649 + 167937629 167937669 41 GATCTTCTGGGAGAAGGACTAAAACGATCCATGGACAAGTT GATCTTCTGGGAGAAGGACTGAAACGATCCATGGACAAGTT Direct Gain 0 0.960393298890583 NA NA prediction 0.920786597781167 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167937649 chr5:167937649 synonymous SNV . 0 21 hm7G_associated_SNPs_39299 0 0 1 0 2 RARS chr5:167937691 5'GT 167937691 Upstream 43bp 36184 chr8 91064101 91064101 1 + C G BLCA 91064101 + 91064081 91064121 41 TGGGACACCATAGAAGAACTCATCAGGAAGACAAAAGGTTC TGGGACACCATAGAAGAACTGATCAGGAAGACAAAAGGTTC Direct Gain 0 0.960198664997314 NA NA prediction 0.920397329994627 Functional Gain - DECR1 ENSG00000104325 CDS Human protein_coding chr8:91064101 chr8:91064101 synonymous SNV . 0 21 hm7G_associated_SNPs_39303 0 0 1 0 1 DECR1 chr8:91064066 3'AG 91064066 Downstream 36bp 36185 chr3 42729785 42729785 1 + A G LUSC 42729785 + 42729765 42729805 41 CCTGGACTCGGTCATGTGCTACGACAGGCTGTGAGCATGGC CCTGGACTCGGTCATGTGCTGCGACAGGCTGTGAGCATGGC Direct Gain 0 0.96019758451413 NA NA prediction 0.920395169028261 Functional Gain - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42729785 chr3:42729785 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_39304 0 0 0 0 1 KLHL40 chr3:42729794 5'GT 42729794 Upstream 10bp 36186 chr10 12292350 12292350 1 + A G rs1131465 12292350 + 12292330 12292370 41 CGACTGATGAGCGTACTGGAACTGGAGAAGAGGAGGCCCCG CGACTGATGAGCGTACTGGAGCTGGAGAAGAGGAGGCCCCG Direct Gain 0 0.960132129136543 NA NA prediction 0.920264258273087 Functional Gain - CDC123 ENSG00000151465 UTR3 Human protein_coding chr10:12292350 chr10:12292350 . . 0 21 hm7G_associated_SNPs_39305 0 0 1 1 1 CDC123 chr10:12292310 3'AG 12292310 Downstream 41bp 36187 chr20 10036200 10036200 1 + A G LUSC 10036200 + 10036180 10036220 41 CTGATCAGGAAGAGGGAACTACGGCGAGAGAGGTTTACACA CTGATCAGGAAGAGGGAACTGCGGCGAGAGAGGTTTACACA Direct Gain 0 0.960129711535293 NA NA prediction 0.920259423070586 Functional Gain - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10036200 chr20:10036200 synonymous SNV . 0 21 hm7G_associated_SNPs_39306 0 0 1 0 1 ANKEF1 chr20:10036150 3'AG 10036150 Downstream 51bp 36188 chr1 207039334 207039334 1 + T G UCEC 207039334 + 207039314 207039354 41 TCAGGAAATACGAAATGGATTTTCTGAGATACGGGGCAGTG TCAGGAAATACGAAATGGATGTTCTGAGATACGGGGCAGTG Direct Gain 0 0.960107921030831 NA NA prediction 0.920215842061661 Functional Gain - IL20 ENSG00000162891 CDS Human protein_coding chr1:207039334 chr1:207039334 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39307 0 0 0 0 1 IL20 chr1:207039356 5'GT 207039356 Upstream 23bp 36189 chr9 133993218 133993218 1 + C G HNSC 133993218 + 133993198 133993238 41 GGAGATGAAGAAGATGATCTCAGAGGTGACAGGAGGGGTCA GGAGATGAAGAAGATGATCTGAGAGGTGACAGGAGGGGTCA Direct Gain 0 0.95997487039009 NA NA prediction 0.91994974078018 Functional Gain - AIF1L ENSG00000126878 CDS Human protein_coding chr9:133993218 chr9:133993218 stopgain 0.982 0 21 hm7G_associated_SNPs_39309 0 0 1 0 3 AIF1L chr9:133993143 3'AG 133993143 Downstream 76bp 36190 chr9 133993218 133993218 1 + C G HNSC 133993218 + 133993198 133993238 41 GGAGATGAAGAAGATGATCTCAGAGGTGACAGGAGGGGTCA GGAGATGAAGAAGATGATCTGAGAGGTGACAGGAGGGGTCA Direct Gain 0 0.95997487039009 NA NA prediction 0.91994974078018 Functional Gain - AIF1L ENSG00000126878 CDS Human protein_coding chr9:133993218 chr9:133993218 stopgain 0.982 0 21 hm7G_associated_SNPs_39309 0 0 1 0 3 AIF1L chr9:133993234 5'GT 133993234 Upstream 17bp 36191 chr9 133993218 133993218 1 + C G HNSC 133993218 + 133993198 133993238 41 GGAGATGAAGAAGATGATCTCAGAGGTGACAGGAGGGGTCA GGAGATGAAGAAGATGATCTGAGAGGTGACAGGAGGGGTCA Direct Gain 0 0.95997487039009 NA NA prediction 0.91994974078018 Functional Gain - AIF1L ENSG00000126878 CDS Human protein_coding chr9:133993218 chr9:133993218 stopgain 0.982 0 21 hm7G_associated_SNPs_39309 0 0 1 0 3 AIF1L chr9:133993305 5'GT 133993305 Upstream 88bp 36192 chr11 32622315 32622315 1 + T G LUSC 32622315 + 32622295 32622335 41 TAGAAAATAAGGAAATTTCTTTTGACACAATGCAGCAAGAA TAGAAAATAAGGAAATTTCTGTTGACACAATGCAGCAAGAA Direct Gain 0 0.959947611176484 NA NA prediction 0.919895222352967 Functional Gain - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32622315 chr11:32622315 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39310 0 0 1 0 2 EIF3M chr11:32622235 3'AG 32622235 Downstream 81bp 36193 chr11 32622315 32622315 1 + T G LUSC 32622315 + 32622295 32622335 41 TAGAAAATAAGGAAATTTCTTTTGACACAATGCAGCAAGAA TAGAAAATAAGGAAATTTCTGTTGACACAATGCAGCAAGAA Direct Gain 0 0.959947611176484 NA NA prediction 0.919895222352967 Functional Gain - EIF3M ENSG00000149100 CDS Human protein_coding chr11:32622315 chr11:32622315 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39310 0 0 1 0 2 EIF3M chr11:32622378 5'GT 32622378 Upstream 64bp 36194 chr18 74968148 74968148 1 + T G rs148677424 74968148 + 74968128 74968168 41 GCATAAAAAGTTGAAGAACATGTCAAAGAAGTCTGAAGCAT GCATAAAAAGTTGAAGAACAGGTCAAAGAAGTCTGAAGCAT Direct Gain 0 0.959929004936389 NA NA prediction 0.919858009872779 Functional Gain - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74968148 chr18:74968148 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39311 0 0 0 0 2 GALR1 chr18:74968114 3'AG 74968114 Downstream 35bp 36195 chr18 74968148 74968148 1 + T G rs148677424 74968148 + 74968128 74968168 41 GCATAAAAAGTTGAAGAACATGTCAAAGAAGTCTGAAGCAT GCATAAAAAGTTGAAGAACAGGTCAAAGAAGTCTGAAGCAT Direct Gain 0 0.959929004936389 NA NA prediction 0.919858009872779 Functional Gain - GALR1 ENSG00000166573 CDS Human protein_coding chr18:74968148 chr18:74968148 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39311 0 0 0 0 2 GALR1 chr18:74968179 5'GT 74968179 Upstream 32bp 36196 chr20 55100090 55100090 1 + C G STAD 55100090 + 55100070 55100110 41 CGTTTGTGATACTGCAGTGTCAAAGAGACAGTGAGAAGAAT CGTTTGTGATACTGCAGTGTGAAAGAGACAGTGAGAAGAAT Direct Gain 0 0.959882186739073 NA NA prediction 0.919764373478145 Functional Gain - FAM209A ENSG00000124103 CDS Human protein_coding chr20:55100090 chr20:55100090 nonsynonymous SNV 0.442 0 21 hm7G_associated_SNPs_39312 0 0 0 0 1 FAM209A chr20:55100113 5'GT 55100113 Upstream 24bp 36197 chr10 28897120 28897120 1 + A G rs2232791 28897120 + 28897100 28897140 41 TATCTTTTTATTTAGAATCTACATCAGGAGACAAACCCGTA TATCTTTTTATTTAGAATCTGCATCAGGAGACAAACCCGTA Direct Gain 0 0.959859974750252 NA NA prediction 0.919719949500504 Functional Gain - WAC ENSG00000095787 CDS Human protein_coding chr10:28897120 chr10:28897120 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_39313 0 0 1 0 1 WAC chr10:28897115 3'AG 28897115 Downstream 6bp 36198 chr12 81112685 81112685 1 + C G LUSC 81112685 + 81112665 81112705 41 ATCCAGCTTGGATTGCTTATCCAACATAGTGGACCGGATCA ATCCAGCTTGGATTGCTTATGCAACATAGTGGACCGGATCA Direct Gain 0 0.959833478603944 NA NA prediction 0.919666957207889 Functional Gain - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112685 chr12:81112685 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39314 0 0 0 0 1 MYF5 chr12:81112640 3'AG 81112640 Downstream 46bp 36199 chr17 6909850 6909850 1 + A G GBM 6909850 + 6909830 6909870 41 TTCTACCAAAGGGATGACATAGTGAAGGGGGACCCTGAGCT TTCTACCAAAGGGATGACATGGTGAAGGGGGACCCTGAGCT Direct Gain 0 0.959675380373696 NA NA prediction 0.919350760747391 Functional Gain - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6909850 chr17:6909850 nonsynonymous SNV 0.060 0 21 hm7G_associated_SNPs_39315 0 0 0 0 2 ALOX12 chr17:6909805 3'AG 6909805 Downstream 46bp 36200 chr17 6909850 6909850 1 + A G GBM 6909850 + 6909830 6909870 41 TTCTACCAAAGGGATGACATAGTGAAGGGGGACCCTGAGCT TTCTACCAAAGGGATGACATGGTGAAGGGGGACCCTGAGCT Direct Gain 0 0.959675380373696 NA NA prediction 0.919350760747391 Functional Gain - ALOX12 ENSG00000108839 CDS Human protein_coding chr17:6909850 chr17:6909850 nonsynonymous SNV 0.060 0 21 hm7G_associated_SNPs_39315 0 0 0 0 2 ALOX12 chr17:6909926 5'GT 6909926 Upstream 77bp 36201 chr3 119222827 119222827 1 + A G STAD 119222827 + 119222807 119222847 41 GAACACTAGTCTGAATGTATACCGAAATAAAGATGCCTTAA GAACACTAGTCTGAATGTATGCCGAAATAAAGATGCCTTAA Direct Gain 0 0.959618909396791 NA NA prediction 0.919237818793581 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119222827 chr3:119222827 nonsynonymous SNV 0.971 4 21 hm7G_associated_SNPs_39316 0 0 1 2 2 TIMMDC1 chr3:119222801 3'AG 119222801 Downstream 27bp 36202 chr3 119222827 119222827 1 + A G STAD 119222827 + 119222807 119222847 41 GAACACTAGTCTGAATGTATACCGAAATAAAGATGCCTTAA GAACACTAGTCTGAATGTATGCCGAAATAAAGATGCCTTAA Direct Gain 0 0.959618909396791 NA NA prediction 0.919237818793581 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119222827 chr3:119222827 nonsynonymous SNV 0.971 4 21 hm7G_associated_SNPs_39316 0 0 1 2 2 TIMMDC1 chr3:119222868 5'GT 119222868 Upstream 42bp 36203 chr7 156450905 156450905 1 + A G UCEC 156450905 + 156450885 156450925 41 CAGTATCAAACCCGAGTGATACACGATGGGGCCCGCCTGTT CAGTATCAAACCCGAGTGATGCACGATGGGGCCCGCCTGTT Direct Gain 0 0.95960895678989 NA NA prediction 0.91921791357978 Functional Gain - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156450905 chr7:156450905 nonsynonymous SNV 0.643 4 21 hm7G_associated_SNPs_39317 0 0 0 0 2 RNF32 chr7:156450822 3'AG 156450822 Downstream 84bp 36204 chr7 156450905 156450905 1 + A G UCEC 156450905 + 156450885 156450925 41 CAGTATCAAACCCGAGTGATACACGATGGGGCCCGCCTGTT CAGTATCAAACCCGAGTGATGCACGATGGGGCCCGCCTGTT Direct Gain 0 0.95960895678989 NA NA prediction 0.91921791357978 Functional Gain - RNF32 ENSG00000105982 CDS Human protein_coding chr7:156450905 chr7:156450905 nonsynonymous SNV 0.643 4 21 hm7G_associated_SNPs_39317 0 0 0 0 2 RNF32 chr7:156450946 5'GT 156450946 Upstream 42bp 36205 chr19 47111573 47111573 1 + A G HNSC 47111573 + 47111553 47111593 41 CTGAAGCAGAGCTGCAGGATATGATCAATGAGGTGGATGCA CTGAAGCAGAGCTGCAGGATGTGATCAATGAGGTGGATGCA Direct Gain 0 0.959604140816249 NA NA prediction 0.919208281632498 Functional Gain - CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111573 chr19:47111573 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39318 0 0 1 0 1 CALM3 chr19:47111597 5'GT 47111597 Upstream 25bp 36206 chr17 73015849 73015849 1 + A G COAD 73015849 + 73015829 73015869 41 TCCTGGGGGGCAGAATGTGAACAAAGGTACGGGGTGCCTTG TCCTGGGGGGCAGAATGTGAGCAAAGGTACGGGGTGCCTTG Direct Gain 0 0.959600528333726 NA NA prediction 0.919201056667452 Functional Gain - MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73015849 chr17:73015849 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39319 0 0 1 0 2 MRPL58 chr17:73015795 3'AG 73015795 Downstream 55bp 36207 chr17 73015849 73015849 1 + A G COAD 73015849 + 73015829 73015869 41 TCCTGGGGGGCAGAATGTGAACAAAGGTACGGGGTGCCTTG TCCTGGGGGGCAGAATGTGAGCAAAGGTACGGGGTGCCTTG Direct Gain 0 0.959600528333726 NA NA prediction 0.919201056667452 Functional Gain - MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73015849 chr17:73015849 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39319 0 0 1 0 2 MRPL58 chr17:73015854 5'GT 73015854 Upstream 6bp 36208 chr17 72308217 72308217 1 + A G UCEC 72308217 + 72308197 72308237 41 TGCGGCTGAAGGAGAAGGGTAAGGCGGAGGGCAGGGATGAG TGCGGCTGAAGGAGAAGGGTGAGGCGGAGGGCAGGGATGAG Direct Gain 0 0.959472248519783 NA NA prediction 0.918944497039566 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72308217 chr17:72308217 nonsynonymous SNV 0.473 0 21 hm7G_associated_SNPs_39322 0 0 0 0 2 DNAI2 chr17:72308142 3'AG 72308142 Downstream 76bp 36209 chr17 72308217 72308217 1 + A G UCEC 72308217 + 72308197 72308237 41 TGCGGCTGAAGGAGAAGGGTAAGGCGGAGGGCAGGGATGAG TGCGGCTGAAGGAGAAGGGTGAGGCGGAGGGCAGGGATGAG Direct Gain 0 0.959472248519783 NA NA prediction 0.918944497039566 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72308217 chr17:72308217 nonsynonymous SNV 0.473 0 21 hm7G_associated_SNPs_39322 0 0 0 0 2 DNAI2 chr17:72308214 3'AG 72308214 Downstream 4bp 36210 chr20 57568057 57568057 1 + C G STAD 57568057 + 57568037 57568077 41 TCTGCCTTAACTGTAGGTTTCCAGTGGTAGCAATGGGTGTG TCTGCCTTAACTGTAGGTTTGCAGTGGTAGCAATGGGTGTG Direct Gain 0 0.959448663412851 NA NA prediction 0.918897326825701 Functional Gain - NELFCD ENSG00000101158 CDS Human protein_coding chr20:57568057 chr20:57568057 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_39323 0 0 1 0 1 NELFCD chr20:57568053 3'AG 57568053 Downstream 5bp 36211 chr2 170488416 170488416 1 + A G UCEC 170488416 + 170488396 170488436 41 TGATGAGAAGGAAAGGAAAAACAGAGAGAGAGAAAGGGAAA TGATGAGAAGGAAAGGAAAAGCAGAGAGAGAGAAAGGGAAA Direct Gain 0 0.959394055589259 NA NA prediction 0.918788111178518 Functional Gain - PPIG ENSG00000138398 CDS Human protein_coding chr2:170488416 chr2:170488416 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39324 0 0 1 0 1 PPIG chr2:170488443 5'GT 170488443 Upstream 28bp 36212 chr3 118870094 118870094 1 + T G UCEC 118870094 + 118870074 118870114 41 ATTACTGAAAACTTAGTCTATGAAAAGCCAGAGGACCCCCT ATTACTGAAAACTTAGTCTAGGAAAAGCCAGAGGACCCCCT Direct Gain 0 0.959359417113728 NA NA prediction 0.918718834227455 Functional Gain - C3orf30 ENSG00000163424 CDS Human protein_coding chr3:118870094 chr3:118870094 stopgain 1.000 0 21 hm7G_associated_SNPs_39326 0 0 0 0 2 C3orf30 chr3:118870071 3'AG 118870071 Downstream 24bp 36213 chr3 118870094 118870094 1 + T G UCEC 118870094 + 118870074 118870114 41 ATTACTGAAAACTTAGTCTATGAAAAGCCAGAGGACCCCCT ATTACTGAAAACTTAGTCTAGGAAAAGCCAGAGGACCCCCT Direct Gain 0 0.959359417113728 NA NA prediction 0.918718834227455 Functional Gain - C3orf30 ENSG00000163424 CDS Human protein_coding chr3:118870094 chr3:118870094 stopgain 1.000 0 21 hm7G_associated_SNPs_39326 0 0 0 0 2 C3orf30 chr3:118870074 3'AG 118870074 Downstream 21bp 36214 chr6 42995176 42995176 1 + C G SKCM 42995176 + 42995156 42995196 41 TGAAGCAAGAACGTCGGGCTCAGGCCCAGCAGGGCCATCGG TGAAGCAAGAACGTCGGGCTGAGGCCCAGCAGGGCCATCGG Direct Gain 0 0.959352642193917 NA NA prediction 0.918705284387834 Functional Gain - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42995176 chr6:42995176 nonsynonymous SNV 0.981 0 21 hm7G_associated_SNPs_39327 0 0 1 0 2 RRP36 chr6:42995098 3'AG 42995098 Downstream 79bp 36215 chr6 42995176 42995176 1 + C G SKCM 42995176 + 42995156 42995196 41 TGAAGCAAGAACGTCGGGCTCAGGCCCAGCAGGGCCATCGG TGAAGCAAGAACGTCGGGCTGAGGCCCAGCAGGGCCATCGG Direct Gain 0 0.959352642193917 NA NA prediction 0.918705284387834 Functional Gain - RRP36 ENSG00000124541 CDS Human protein_coding chr6:42995176 chr6:42995176 nonsynonymous SNV 0.981 0 21 hm7G_associated_SNPs_39327 0 0 1 0 2 RRP36 chr6:42995215 5'GT 42995215 Upstream 40bp 36216 chrX 49173740 49173740 1 + C G BRCA 49173740 + 49173720 49173760 41 AGGAGATGGGCCTGCCAAATCCAGAGGAGGTGAAAAGGCCT AGGAGATGGGCCTGCCAAATGCAGAGGAGGTGAAAAGGCCT Direct Gain 0 0.959288027108454 NA NA prediction 0.918576054216907 Functional Gain - GAGE10 ENSG00000215274 CDS Human protein_coding chrX:49173740 chrX:49173740 nonsynonymous SNV 0.007 2 21 hm7G_associated_SNPs_39328 0 0 0 0 1 GAGE10 chrX:49173767 5'GT 49173767 Upstream 28bp 36217 chr5 1814521 1814521 1 + A G COAD 1814521 + 1814501 1814541 41 GAGGTGGAGACTCGGGTGATAGCGTGCGATGGCGGCGGGGG GAGGTGGAGACTCGGGTGATGGCGTGCGATGGCGGCGGGGG Direct Gain 0 0.95918425073894 NA NA prediction 0.91836850147788 Functional Gain - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1814521 chr5:1814521 nonsynonymous SNV 0.000 1 21 hm7G_associated_SNPs_39329 0 0 1 0 2 NDUFS6 chr5:1814453 3'AG 1814453 Downstream 69bp 36218 chr5 1814521 1814521 1 + A G COAD 1814521 + 1814501 1814541 41 GAGGTGGAGACTCGGGTGATAGCGTGCGATGGCGGCGGGGG GAGGTGGAGACTCGGGTGATGGCGTGCGATGGCGGCGGGGG Direct Gain 0 0.95918425073894 NA NA prediction 0.91836850147788 Functional Gain - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1814521 chr5:1814521 nonsynonymous SNV 0.000 1 21 hm7G_associated_SNPs_39329 0 0 1 0 2 NDUFS6 chr5:1814575 5'GT 1814575 Upstream 55bp 36219 chrX 69500119 69500119 1 + C G BLCA 69500119 + 69500099 69500139 41 CAGAGTCAACCTGATGGTGTCCTGTGGTGGGTAAGTGAGGG CAGAGTCAACCTGATGGTGTGCTGTGGTGGGTAAGTGAGGG Direct Gain 0 0.959171744898523 NA NA prediction 0.918343489797046 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500119 chrX:69500119 nonsynonymous SNV 0.872 2 21 hm7G_associated_SNPs_39330 0 0 0 0 2 ARR3 chrX:69500045 3'AG 69500045 Downstream 75bp 36220 chrX 69500119 69500119 1 + C G BLCA 69500119 + 69500099 69500139 41 CAGAGTCAACCTGATGGTGTCCTGTGGTGGGTAAGTGAGGG CAGAGTCAACCTGATGGTGTGCTGTGGTGGGTAAGTGAGGG Direct Gain 0 0.959171744898523 NA NA prediction 0.918343489797046 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500119 chrX:69500119 nonsynonymous SNV 0.872 2 21 hm7G_associated_SNPs_39330 0 0 0 0 2 ARR3 chrX:69500128 5'GT 69500128 Upstream 10bp 36221 chr3 193854201 193854201 1 + C G LUSC 193854201 + 193854181 193854221 41 TATAATGGAGAAAAATTCCTCGTCCCCGGTGGCTGCTACCC TATAATGGAGAAAAATTCCTGGTCCCCGGTGGCTGCTACCC Direct Gain 0 0.959136579611239 NA NA prediction 0.918273159222478 Functional Gain - HES1 ENSG00000114315 CDS Human protein_coding chr3:193854201 chr3:193854201 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39331 0 0 1 0 1 HES1 chr3:193854277 5'GT 193854277 Upstream 77bp 36222 chr15 72700113 72700113 1 + C G CESC 72700113 + 72700093 72700133 41 TGTGATTCCAACAGAGAGATCAAGGCTGGGGGTTGGTCCGG TGTGATTCCAACAGAGAGATGAAGGCTGGGGGTTGGTCCGG Direct Gain 0 0.959109124513005 NA NA prediction 0.918218249026011 Functional Gain - TMEM202 ENSG00000187806 CDS Human protein_coding chr15:72700113 chr15:72700113 stopgain 0.042 0 21 hm7G_associated_SNPs_39332 0 0 0 0 1 TMEM202 chr15:72700032 3'AG 72700032 Downstream 82bp 36223 chr6 86181106 86181106 1 + C G BLCA 86181106 + 86181086 86181126 41 AAAGTGAGGGGTGTGGACGTCGTGGTGGGAGGACACTCCAA AAAGTGAGGGGTGTGGACGTGGTGGTGGGAGGACACTCCAA Direct Gain 0 0.958994916770027 NA NA prediction 0.917989833540054 Functional Gain - NT5E ENSG00000135318 CDS Human protein_coding chr6:86181106 chr6:86181106 synonymous SNV . 0 21 hm7G_associated_SNPs_39334 0 0 0 0 1 NT5E chr6:86181143 5'GT 86181143 Upstream 38bp 36224 chr12 49314997 49314997 1 + A G PRAD 49314997 + 49314977 49315017 41 GAATTTCTGGAAAAGGTACAACAAAGTGAAACTGGAGCAAC GAATTTCTGGAAAAGGTACAGCAAAGTGAAACTGGAGCAAC Direct Gain 0 0.958671323408754 NA NA prediction 0.917342646817509 Functional Gain - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49314997 chr12:49314997 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39339 0 0 0 0 1 CCDC65 chr12:49314951 3'AG 49314951 Downstream 47bp 36225 chr1 178485002 178485002 1 + C G LUAD 178485002 + 178484982 178485022 41 TTATTTCCTCAGAATGAACTCAGGGAAGTGAGAGAAGAGCT TTATTTCCTCAGAATGAACTGAGGGAAGTGAGAGAAGAGCT Direct Gain 0 0.958657437074712 NA NA prediction 0.917314874149423 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178485002 chr1:178485002 synonymous SNV . 0 21 hm7G_associated_SNPs_39342 0 0 0 0 2 TEX35 chr1:178484994 3'AG 178484994 Downstream 9bp 36226 chr1 178485002 178485002 1 + C G LUAD 178485002 + 178484982 178485022 41 TTATTTCCTCAGAATGAACTCAGGGAAGTGAGAGAAGAGCT TTATTTCCTCAGAATGAACTGAGGGAAGTGAGAGAAGAGCT Direct Gain 0 0.958657437074712 NA NA prediction 0.917314874149423 Functional Gain - TEX35 ENSG00000240021 CDS Human protein_coding chr1:178485002 chr1:178485002 synonymous SNV . 0 21 hm7G_associated_SNPs_39342 0 0 0 0 2 TEX35 chr1:178485050 5'GT 178485050 Upstream 49bp 36227 chr16 89644017 89644017 1 + A G LUSC 89644017 + 89643997 89644037 41 GGTCTTCACGGTGGACTACTACTTCGAGGAGGTGCAGAGGC GGTCTTCACGGTGGACTACTGCTTCGAGGAGGTGCAGAGGC Direct Gain 0 0.958641811505987 NA NA prediction 0.917283623011973 Functional Gain - CPNE7 ENSG00000178773 CDS Human protein_coding chr16:89644017 chr16:89644017 nonsynonymous SNV 0.663 3 21 hm7G_associated_SNPs_39343 0 0 1 0 1 CPNE7 chr16:89643947 3'AG 89643947 Downstream 71bp 36228 chr19 50086931 50086931 1 + C G rs142455549 50086931 + 50086911 50086951 41 GTGTCTGGAAGAGAGGTGTTCCTGGGAAGAGGCCAGGGAGT GTGTCTGGAAGAGAGGTGTTGCTGGGAAGAGGCCAGGGAGT Direct Gain 0 0.958624190315027 NA NA prediction 0.917248380630054 Functional Gain - PRRG2 ENSG00000126460 CDS Human protein_coding chr19:50086931 chr19:50086931 nonsynonymous SNV 0.986 4 21 hm7G_associated_SNPs_39344 0 0 0 0 1 PRRG2 chr19:50086974 5'GT 50086974 Upstream 44bp 36229 chr19 45261992 45261992 1 + C G CESC 45261992 + 45261972 45262012 41 TTCCTACAGGTCATCGACATCCTGAGGGGGAAGGCCACCCG TTCCTACAGGTCATCGACATGCTGAGGGGGAAGGCCACCCG Direct Gain 0 0.958583409845123 NA NA prediction 0.917166819690245 Functional Gain - BCL3 ENSG00000069399 CDS Human protein_coding chr19:45261992 chr19:45261992 nonsynonymous SNV 0.881 2 21 hm7G_associated_SNPs_39345 0 0 1 0 1 BCL3 chr19:45261981 3'AG 45261981 Downstream 12bp 36230 chr11 17742507 17742507 1 + A G rs200285351 17742507 + 17742487 17742527 41 GAACTGCTACGAAGGCGCCTACTACAACGAGGCGCCCAGCG GAACTGCTACGAAGGCGCCTGCTACAACGAGGCGCCCAGCG Direct Gain 0 0.958494842028765 NA NA prediction 0.91698968405753 Functional Gain - MYOD1 ENSG00000129152 CDS Human protein_coding chr11:17742507 chr11:17742507 nonsynonymous SNV 0.985 4 21 hm7G_associated_SNPs_39346 0 0 0 0 2 MYOD1 chr11:17742449 3'AG 17742449 Downstream 59bp 36231 chr11 17742507 17742507 1 + A G rs200285351 17742507 + 17742487 17742527 41 GAACTGCTACGAAGGCGCCTACTACAACGAGGCGCCCAGCG GAACTGCTACGAAGGCGCCTGCTACAACGAGGCGCCCAGCG Direct Gain 0 0.958494842028765 NA NA prediction 0.91698968405753 Functional Gain - MYOD1 ENSG00000129152 CDS Human protein_coding chr11:17742507 chr11:17742507 nonsynonymous SNV 0.985 4 21 hm7G_associated_SNPs_39346 0 0 0 0 2 MYOD1 chr11:17742527 5'GT 17742527 Upstream 21bp 36232 chrX 154467081 154467081 1 + A G COAD 154467081 + 154467061 154467101 41 AGGGTTTATAATTGGGATGTAAAAAGAAGAAACAAGGATGA AGGGTTTATAATTGGGATGTGAAAAGAAGAAACAAGGATGA Direct Gain 0 0.958378224155026 NA NA prediction 0.916756448310052 Functional Gain - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154467081 chrX:154467081 synonymous SNV . 0 21 hm7G_associated_SNPs_39348 0 0 1 0 1 VBP1 chrX:154467053 3'AG 154467053 Downstream 29bp 36233 chr8 39771492 39771492 1 + T G BLCA 39771492 + 39771472 39771512 41 ATCAGTAAAGAGTACCATATTGATGAAGAAGTGGGCTTTGC ATCAGTAAAGAGTACCATATGGATGAAGAAGTGGGCTTTGC Direct Gain 0 0.958370041308092 NA NA prediction 0.916740082616183 Functional Gain - IDO1 ENSG00000131203 CDS Human protein_coding chr8:39771492 chr8:39771492 nonsynonymous SNV 0.530 3 21 hm7G_associated_SNPs_39349 0 0 0 0 1 IDO1 chr8:39771528 5'GT 39771528 Upstream 37bp 36234 chr16 89922592 89922592 1 + C G CESC 89922592 + 89922572 89922612 41 GAGAAGATCCTGGAGGAGATCAAGCAGGAGCGGAGGCTGCG GAGAAGATCCTGGAGGAGATGAAGCAGGAGCGGAGGCTGCG Direct Gain 0 0.958333404718047 NA NA prediction 0.916666809436094 Functional Gain - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89922592 chr16:89922592 nonsynonymous SNV 0.874 4 21 hm7G_associated_SNPs_39351 0 0 1 0 2 SPIRE2 chr16:89922521 3'AG 89922521 Downstream 72bp 36235 chr16 89922592 89922592 1 + C G CESC 89922592 + 89922572 89922612 41 GAGAAGATCCTGGAGGAGATCAAGCAGGAGCGGAGGCTGCG GAGAAGATCCTGGAGGAGATGAAGCAGGAGCGGAGGCTGCG Direct Gain 0 0.958333404718047 NA NA prediction 0.916666809436094 Functional Gain - SPIRE2 ENSG00000204991 CDS Human protein_coding chr16:89922592 chr16:89922592 nonsynonymous SNV 0.874 4 21 hm7G_associated_SNPs_39351 0 0 1 0 2 SPIRE2 chr16:89922644 5'GT 89922644 Upstream 53bp 36236 chr2 103322367 103322367 1 + A G BLCA 103322367 + 103322347 103322387 41 ACGAAGCTTCCAGAAAAGCTACAAAAGAGGAGGACTATTTC ACGAAGCTTCCAGAAAAGCTGCAAAAGAGGAGGACTATTTC Direct Gain 0 0.958270960773791 NA NA prediction 0.916541921547583 Functional Gain - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103322367 chr2:103322367 synonymous SNV . 0 21 hm7G_associated_SNPs_39352 0 0 0 0 2 SLC9A2 chr2:103322305 3'AG 103322305 Downstream 63bp 36237 chr2 103322367 103322367 1 + A G BLCA 103322367 + 103322347 103322387 41 ACGAAGCTTCCAGAAAAGCTACAAAAGAGGAGGACTATTTC ACGAAGCTTCCAGAAAAGCTGCAAAAGAGGAGGACTATTTC Direct Gain 0 0.958270960773791 NA NA prediction 0.916541921547583 Functional Gain - SLC9A2 ENSG00000115616 CDS Human protein_coding chr2:103322367 chr2:103322367 synonymous SNV . 0 21 hm7G_associated_SNPs_39352 0 0 0 0 2 SLC9A2 chr2:103322395 5'GT 103322395 Upstream 29bp 36238 chr10 112262508 112262508 1 + C G THCA 112262508 + 112262488 112262528 41 AGACTTTCTACTCGGAATATCCTGAGTGTTGCGTGGATGTA AGACTTTCTACTCGGAATATGCTGAGTGTTGCGTGGATGTA Direct Gain 0 0.958232225420857 NA NA prediction 0.916464450841714 Functional Gain - DUSP5 ENSG00000138166 CDS Human protein_coding chr10:112262508 chr10:112262508 nonsynonymous SNV 0.968 4 21 hm7G_associated_SNPs_39353 0 0 1 0 1 DUSP5 chr10:112262479 3'AG 112262479 Downstream 30bp 36239 chr2 28002386 28002386 1 + A G UCEC 28002386 + 28002366 28002406 41 GACTTTGATTTATAAAGAGAAGACTGAGGGCGGGGATACTG GACTTTGATTTATAAAGAGAGGACTGAGGGCGGGGATACTG Direct Gain 0 0.958134166244112 NA NA prediction 0.916268332488223 Functional Gain - MRPL33 ENSG00000243147 CDS Human protein_coding chr2:28002386 chr2:28002386 nonsynonymous SNV 0.966 2 21 hm7G_associated_SNPs_39356 0 0 1 0 1 MRPL33 chr2:28002300 3'AG 28002300 Downstream 87bp 36240 chr10 94452163 94452163 1 + C G LUAD 94452163 + 94452143 94452183 41 GCCCCTTCTTGCAGAGGCCTCTGCATAAAAGGAAAGGCGGC GCCCCTTCTTGCAGAGGCCTGTGCATAAAAGGAAAGGCGGC Direct Gain 0 0.958114926501902 NA NA prediction 0.916229853003805 Functional Gain - HHEX ENSG00000152804 CDS Human protein_coding chr10:94452163 chr10:94452163 nonsynonymous SNV 0.926 3 21 hm7G_associated_SNPs_39357 0 0 1 0 1 HHEX chr10:94452125 3'AG 94452125 Downstream 39bp 36241 chr10 70097657 70097657 1 + A G UCEC 70097657 + 70097637 70097677 41 GATAACATTGACGATGGACTACCAGGGGAGAAGCACAGGGG GATAACATTGACGATGGACTGCCAGGGGAGAAGCACAGGGG Direct Gain 0 0.958016130806502 NA NA prediction 0.916032261613004 Functional Gain - HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70097657 chr10:70097657 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39360 0 0 1 0 2 HNRNPH3 chr10:70097615 3'AG 70097615 Downstream 43bp 36242 chr10 70097657 70097657 1 + A G UCEC 70097657 + 70097637 70097677 41 GATAACATTGACGATGGACTACCAGGGGAGAAGCACAGGGG GATAACATTGACGATGGACTGCCAGGGGAGAAGCACAGGGG Direct Gain 0 0.958016130806502 NA NA prediction 0.916032261613004 Functional Gain - HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70097657 chr10:70097657 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39360 0 0 1 0 2 HNRNPH3 chr10:70097753 5'GT 70097753 Upstream 97bp 36243 chr19 2097323 2097323 1 + A G UCEC 2097323 + 2097303 2097343 41 GCTGTACCAGGGGAAGATGTACTTCCCCGGTAAGGGGCGCG GCTGTACCAGGGGAAGATGTGCTTCCCCGGTAAGGGGCGCG Direct Gain 0 0.95800266232889 NA NA prediction 0.91600532465778 Functional Gain - IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2097323 chr19:2097323 nonsynonymous SNV 0.981 3 21 hm7G_associated_SNPs_39361 0 0 0 0 2 IZUMO4 chr19:2097251 3'AG 2097251 Downstream 73bp 36244 chr19 2097323 2097323 1 + A G UCEC 2097323 + 2097303 2097343 41 GCTGTACCAGGGGAAGATGTACTTCCCCGGTAAGGGGCGCG GCTGTACCAGGGGAAGATGTGCTTCCCCGGTAAGGGGCGCG Direct Gain 0 0.95800266232889 NA NA prediction 0.91600532465778 Functional Gain - IZUMO4 ENSG00000099840 CDS Human protein_coding chr19:2097323 chr19:2097323 nonsynonymous SNV 0.981 3 21 hm7G_associated_SNPs_39361 0 0 0 0 2 IZUMO4 chr19:2097331 5'GT 2097331 Upstream 9bp 36245 chr2 177017345 177017345 1 + A G rs369822828 177017345 + 177017325 177017365 41 TTGTCTCGCAGTGAACCCCAACTACACCGGTGGGGAACCCA TTGTCTCGCAGTGAACCCCAGCTACACCGGTGGGGAACCCA Direct Gain 0 0.957921128093235 NA NA prediction 0.915842256186469 Functional Gain - HOXD4 ENSG00000170166 CDS Human protein_coding chr2:177017345 chr2:177017345 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39362 0 0 0 0 1 HOXD4 chr2:177017336 3'AG 177017336 Downstream 10bp 36246 chr16 58301478 58301478 1 + A G LUAD 58301478 + 58301458 58301498 41 AAAATTGAAAAAGAAACACTACAAGTAGAGGAGGTAGGAGA AAAATTGAAAAAGAAACACTGCAAGTAGAGGAGGTAGGAGA Direct Gain 0 0.957905989566941 NA NA prediction 0.915811979133882 Functional Gain - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58301478 chr16:58301478 synonymous SNV . 0 21 hm7G_associated_SNPs_39363 0 0 0 0 2 CCDC113 chr16:58301383 3'AG 58301383 Downstream 96bp 36247 chr16 58301478 58301478 1 + A G LUAD 58301478 + 58301458 58301498 41 AAAATTGAAAAAGAAACACTACAAGTAGAGGAGGTAGGAGA AAAATTGAAAAAGAAACACTGCAAGTAGAGGAGGTAGGAGA Direct Gain 0 0.957905989566941 NA NA prediction 0.915811979133882 Functional Gain - CCDC113 ENSG00000103021 CDS Human protein_coding chr16:58301478 chr16:58301478 synonymous SNV . 0 21 hm7G_associated_SNPs_39363 0 0 0 0 2 CCDC113 chr16:58301490 5'GT 58301490 Upstream 13bp 36248 chr19 49842664 49842664 1 + A G CESC 49842664 + 49842644 49842684 41 ATTTGCCTGGGCGTCGGCCTACTCGAGGTGATCTGGCCCCG ATTTGCCTGGGCGTCGGCCTGCTCGAGGTGATCTGGCCCCG Direct Gain 0 0.957891791453915 NA NA prediction 0.915783582907831 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842664 chr19:49842664 synonymous SNV . 0 21 hm7G_associated_SNPs_39364 0 0 1 0 2 CD37 chr19:49842587 3'AG 49842587 Downstream 78bp 36249 chr19 49842664 49842664 1 + A G CESC 49842664 + 49842644 49842684 41 ATTTGCCTGGGCGTCGGCCTACTCGAGGTGATCTGGCCCCG ATTTGCCTGGGCGTCGGCCTGCTCGAGGTGATCTGGCCCCG Direct Gain 0 0.957891791453915 NA NA prediction 0.915783582907831 Functional Gain - CD37 ENSG00000104894 CDS Human protein_coding chr19:49842664 chr19:49842664 synonymous SNV . 0 21 hm7G_associated_SNPs_39364 0 0 1 0 2 CD37 chr19:49842670 5'GT 49842670 Upstream 7bp 36250 chr5 69372363 69372363 1 + C G ESCA 69372363 + 69372343 69372383 41 TACAGGGTTTTAGACAAAATCAAAAAGAAGGAAGGTGCTCA TACAGGGTTTTAGACAAAATGAAAAAGAAGGAAGGTGCTCA Direct Gain 0 0.957732809746581 NA NA prediction 0.915465619493163 Functional Gain - SMN1;SMN2 ENSG00000205571 CDS Human protein_coding chr5:69372363 chr5:69372363 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_39369 0 0 1 0 1 SMN1;SMN2 chr5:69372401 5'GT 69372401 Upstream 39bp 36251 chr4 74735632 74735632 1 + C G BLCA 74735632 + 74735612 74735652 41 TCCCTCTGCAGAGCCACACTCAAGAATGGGCGGAAAGCTTG TCCCTCTGCAGAGCCACACTGAAGAATGGGCGGAAAGCTTG Direct Gain 0 0.957719560267889 NA NA prediction 0.915439120535778 Functional Gain - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735632 chr4:74735632 synonymous SNV . 0 21 hm7G_associated_SNPs_39370 0 0 0 0 2 CXCL1 chr4:74735623 3'AG 74735623 Downstream 10bp 36252 chr4 74735632 74735632 1 + C G BLCA 74735632 + 74735612 74735652 41 TCCCTCTGCAGAGCCACACTCAAGAATGGGCGGAAAGCTTG TCCCTCTGCAGAGCCACACTGAAGAATGGGCGGAAAGCTTG Direct Gain 0 0.957719560267889 NA NA prediction 0.915439120535778 Functional Gain - CXCL1 ENSG00000163739 CDS Human protein_coding chr4:74735632 chr4:74735632 synonymous SNV . 0 21 hm7G_associated_SNPs_39370 0 0 0 0 2 CXCL1 chr4:74735706 5'GT 74735706 Upstream 75bp 36253 chr12 112228252 112228252 1 + C G OV 112228252 + 112228232 112228272 41 TTGCAGTGGAATTTCCCGCTCCTGATGCAAGCATGGAAGCT TTGCAGTGGAATTTCCCGCTGCTGATGCAAGCATGGAAGCT Direct Gain 0 0.957655799193206 NA NA prediction 0.915311598386412 Functional Gain - ALDH2 ENSG00000111275;ENSG00000257767 CDS Human other chr12:112228252 chr12:112228252 synonymous SNV . 0 21 hm7G_associated_SNPs_39371 0 0 1 0 1 ALDH2 chr12:112228238 3'AG 112228238 Downstream 15bp 36254 chr7 141418931 141418931 1 + T G STAD 141418931 + 141418911 141418951 41 GAAAAAGAATTCTTGGAGGTTGAAAAAATTGGGGTTGGCGA GAAAAAGAATTCTTGGAGGTGGAAAAAATTGGGGTTGGCGA Direct Gain 0 0.957646333334184 NA NA prediction 0.915292666668368 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141418931 chr7:141418931 synonymous SNV . 0 21 hm7G_associated_SNPs_39372 0 0 0 0 1 WEE2 chr7:141418872 3'AG 141418872 Downstream 60bp 36255 chr17 21207763 21207763 1 + C G UCEC 21207763 + 21207743 21207783 41 AAGCCCTCCAATGTCCTTATCAACAAGGAGGGCCATGTGAA AAGCCCTCCAATGTCCTTATGAACAAGGAGGGCCATGTGAA Direct Gain 0 0.9575250782132 NA NA prediction 0.9150501564264 Functional Gain - MAP2K3 ENSG00000034152 CDS Human protein_coding chr17:21207763 chr17:21207763 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39374 0 0 1 0 1 MAP2K3 chr17:21207738 3'AG 21207738 Downstream 26bp 36256 chr1 92511160 92511160 1 + C G BLCA 92511160 + 92511140 92511180 41 GGCTAATTGCCATCTGTTATCCTGAAATGGTGATGAAGCTT GGCTAATTGCCATCTGTTATGCTGAAATGGTGATGAAGCTT Direct Gain 0 0.957510541486511 NA NA prediction 0.915021082973023 Functional Gain - EPHX4 ENSG00000172031 CDS Human protein_coding chr1:92511160 chr1:92511160 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_39375 0 0 0 0 1 EPHX4 chr1:92511217 5'GT 92511217 Upstream 58bp 36257 chr1 25666992 25666992 1 + A G OV 25666992 + 25666972 25667012 41 AAAAAAATGTCTGGATTTCTAGAGGGCTTGAGATGCTCAGA AAAAAAATGTCTGGATTTCTGGAGGGCTTGAGATGCTCAGA Direct Gain 0 0.957446794645095 NA NA prediction 0.914893589290191 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25666992 chr1:25666992 synonymous SNV . 0 21 hm7G_associated_SNPs_39377 0 0 1 0 2 TMEM50A chr1:25666965 3'AG 25666965 Downstream 28bp 36258 chr1 25666992 25666992 1 + A G OV 25666992 + 25666972 25667012 41 AAAAAAATGTCTGGATTTCTAGAGGGCTTGAGATGCTCAGA AAAAAAATGTCTGGATTTCTGGAGGGCTTGAGATGCTCAGA Direct Gain 0 0.957446794645095 NA NA prediction 0.914893589290191 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25666992 chr1:25666992 synonymous SNV . 0 21 hm7G_associated_SNPs_39377 0 0 1 0 2 TMEM50A chr1:25667070 5'GT 25667070 Upstream 79bp 36259 chr16 69964077 69964077 1 + A G UCEC 69964077 + 69964057 69964097 41 CCCAGGATGGGAGATGAAATACACCAGCGAGGGGGTGCGAT CCCAGGATGGGAGATGAAATGCACCAGCGAGGGGGTGCGAT Direct Gain 0 0.957434395577965 NA NA prediction 0.914868791155929 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69964077 chr16:69964077 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39378 0 0 1 0 2 WWP2 chr16:69964033 3'AG 69964033 Downstream 45bp 36260 chr16 69964077 69964077 1 + A G UCEC 69964077 + 69964057 69964097 41 CCCAGGATGGGAGATGAAATACACCAGCGAGGGGGTGCGAT CCCAGGATGGGAGATGAAATGCACCAGCGAGGGGGTGCGAT Direct Gain 0 0.957434395577965 NA NA prediction 0.914868791155929 Functional Gain - WWP2 ENSG00000198373 CDS Human protein_coding chr16:69964077 chr16:69964077 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39378 0 0 1 0 2 WWP2 chr16:69964161 5'GT 69964161 Upstream 85bp 36261 chr5 151179507 151179507 1 + C G BRCA 151179507 + 151179487 151179527 41 CACAAAGACCTCAGCGGGATCAAAGAGTGCGAGAACAACGA CACAAAGACCTCAGCGGGATGAAAGAGTGCGAGAACAACGA Direct Gain 0 0.957372804642036 NA NA prediction 0.914745609284071 Functional Gain - G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151179507 chr5:151179507 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39379 0 0 1 0 3 G3BP1 chr5:151179450 3'AG 151179450 Downstream 58bp 36262 chr5 151179507 151179507 1 + C G BRCA 151179507 + 151179487 151179527 41 CACAAAGACCTCAGCGGGATCAAAGAGTGCGAGAACAACGA CACAAAGACCTCAGCGGGATGAAAGAGTGCGAGAACAACGA Direct Gain 0 0.957372804642036 NA NA prediction 0.914745609284071 Functional Gain - G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151179507 chr5:151179507 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39379 0 0 1 0 3 G3BP1 chr5:151179460 3'AG 151179460 Downstream 48bp 36263 chr5 151179507 151179507 1 + C G BRCA 151179507 + 151179487 151179527 41 CACAAAGACCTCAGCGGGATCAAAGAGTGCGAGAACAACGA CACAAAGACCTCAGCGGGATGAAAGAGTGCGAGAACAACGA Direct Gain 0 0.957372804642036 NA NA prediction 0.914745609284071 Functional Gain - G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151179507 chr5:151179507 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39379 0 0 1 0 3 G3BP1 chr5:151179561 5'GT 151179561 Upstream 55bp 36264 chr6 106543515 106543515 1 + A G COAD 106543515 + 106543495 106543535 41 TGGAGTGATGAGTAAAGAATACATACCAAAGGGCACACGTT TGGAGTGATGAGTAAAGAATGCATACCAAAGGGCACACGTT Direct Gain 0 0.957115481419153 NA NA prediction 0.914230962838306 Functional Gain - PRDM1 ENSG00000057657 CDS Human protein_coding chr6:106543515 chr6:106543515 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39382 0 0 0 0 1 PRDM1 chr6:106543490 3'AG 106543490 Downstream 26bp 36265 chr2 135655994 135655994 1 + T G UCEC 135655994 + 135655974 135656014 41 ATAGAGTCCATGGAAGAATTTGATGAAGAAACAAAGGTATA ATAGAGTCCATGGAAGAATTGGATGAAGAAACAAAGGTATA Direct Gain 0 0.957045449836391 NA NA prediction 0.914090899672782 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135655994 chr2:135655994 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39384 0 0 0 0 2 ACMSD chr2:135655911 3'AG 135655911 Downstream 84bp 36266 chr2 135655994 135655994 1 + T G UCEC 135655994 + 135655974 135656014 41 ATAGAGTCCATGGAAGAATTTGATGAAGAAACAAAGGTATA ATAGAGTCCATGGAAGAATTGGATGAAGAAACAAAGGTATA Direct Gain 0 0.957045449836391 NA NA prediction 0.914090899672782 Functional Gain - ACMSD ENSG00000153086 CDS Human protein_coding chr2:135655994 chr2:135655994 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39384 0 0 0 0 2 ACMSD chr2:135656009 5'GT 135656009 Upstream 16bp 36267 chr19 9939038 9939038 1 + C G LUSC 9939038 + 9939018 9939058 41 TCGAGGTTGTTTGCAACGACCGTCTGGGGAAGAAGGTCCGC TCGAGGTTGTTTGCAACGACGGTCTGGGGAAGAAGGTCCGC Direct Gain 0 0.956920173778362 NA NA prediction 0.913840347556725 Functional Gain - UBL5 ENSG00000198258 CDS Human protein_coding chr19:9939038 chr19:9939038 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_39388 0 0 1 0 2 UBL5 chr19:9939003 3'AG 9939003 Downstream 36bp 36268 chr19 9939038 9939038 1 + C G LUSC 9939038 + 9939018 9939058 41 TCGAGGTTGTTTGCAACGACCGTCTGGGGAAGAAGGTCCGC TCGAGGTTGTTTGCAACGACGGTCTGGGGAAGAAGGTCCGC Direct Gain 0 0.956920173778362 NA NA prediction 0.913840347556725 Functional Gain - UBL5 ENSG00000198258 CDS Human protein_coding chr19:9939038 chr19:9939038 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_39388 0 0 1 0 2 UBL5 chr19:9939069 5'GT 9939069 Upstream 32bp 36269 chr19 5691557 5691557 1 + C G BRCA 5691557 + 5691537 5691577 41 TGGCAGGTGGGGACGCACATCCGCGCCAAGAGGAAGCGGGA TGGCAGGTGGGGACGCACATGCGCGCCAAGAGGAAGCGGGA Direct Gain 0 0.95690943625593 NA NA prediction 0.913818872511861 Functional Gain - RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691557 chr19:5691557 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_39389 0 0 1 0 2 RPL36 chr19:5691464 3'AG 5691464 Downstream 94bp 36270 chr19 5691557 5691557 1 + C G BRCA 5691557 + 5691537 5691577 41 TGGCAGGTGGGGACGCACATCCGCGCCAAGAGGAAGCGGGA TGGCAGGTGGGGACGCACATGCGCGCCAAGAGGAAGCGGGA Direct Gain 0 0.95690943625593 NA NA prediction 0.913818872511861 Functional Gain - RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691557 chr19:5691557 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_39389 0 0 1 0 2 RPL36 chr19:5691543 3'AG 5691543 Downstream 15bp 36271 chr3 161216961 161216961 1 + C G ESCA 161216961 + 161216941 161216981 41 TTAAAATCCCATTTCTAGGTCCTAAAGGAGAGGCTGGAAAT TTAAAATCCCATTTCTAGGTGCTAAAGGAGAGGCTGGAAAT Direct Gain 0 0.956878626017898 NA NA prediction 0.913757252035796 Functional Gain - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161216961 chr3:161216961 nonsynonymous SNV 0.882 1 21 hm7G_associated_SNPs_39390 0 0 0 0 2 OTOL1 chr3:161216959 3'AG 161216959 Downstream 3bp 36272 chr3 161216961 161216961 1 + C G ESCA 161216961 + 161216941 161216981 41 TTAAAATCCCATTTCTAGGTCCTAAAGGAGAGGCTGGAAAT TTAAAATCCCATTTCTAGGTGCTAAAGGAGAGGCTGGAAAT Direct Gain 0 0.956878626017898 NA NA prediction 0.913757252035796 Functional Gain - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161216961 chr3:161216961 nonsynonymous SNV 0.882 1 21 hm7G_associated_SNPs_39390 0 0 0 0 2 OTOL1 chr3:161217048 5'GT 161217048 Upstream 88bp 36273 chr22 25627633 25627633 1 + A G UCEC 25627633 + 25627613 25627653 41 CCTGCTGGAGAAGGGAGACTACAAGGACAGCAGCGACTTTG CCTGCTGGAGAAGGGAGACTGCAAGGACAGCAGCGACTTTG Direct Gain 0 0.95681998873541 NA NA prediction 0.913639977470819 Functional Gain - CRYBB2 ENSG00000244752 CDS Human protein_coding chr22:25627633 chr22:25627633 nonsynonymous SNV 0.393 5 21 hm7G_associated_SNPs_39391 0 0 0 0 1 CRYBB2 chr22:25627571 3'AG 25627571 Downstream 63bp 36274 chr15 52186062 52186062 1 + C G rs143809392 52186062 + 52186042 52186082 41 TATTTGATGAGCCACCAAATCCAACCAATGTAGAAGAGAGT TATTTGATGAGCCACCAAATGCAACCAATGTAGAAGAGAGT Direct Gain 0 0.956749667403945 NA NA prediction 0.91349933480789 Functional Gain - TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52186062 chr15:52186062 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39392 0 0 1 1 2 TMOD3 chr15:52186012 3'AG 52186012 Downstream 51bp 36275 chr15 52186062 52186062 1 + C G rs143809392 52186062 + 52186042 52186082 41 TATTTGATGAGCCACCAAATCCAACCAATGTAGAAGAGAGT TATTTGATGAGCCACCAAATGCAACCAATGTAGAAGAGAGT Direct Gain 0 0.956749667403945 NA NA prediction 0.91349933480789 Functional Gain - TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52186062 chr15:52186062 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39392 0 0 1 1 2 TMOD3 chr15:52186142 5'GT 52186142 Upstream 81bp 36276 chr6 24532354 24532354 1 + A G COAD 24532354 + 24532334 24532374 41 TTAACTTTGGCAGGTTCGATACAGAGGAGGAGGCTATAGCA TTAACTTTGGCAGGTTCGATGCAGAGGAGGAGGCTATAGCA Direct Gain 0 0.956662181989202 NA NA prediction 0.913324363978404 Functional Gain - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24532354 chr6:24532354 nonsynonymous SNV 0.665 3 21 hm7G_associated_SNPs_39395 0 0 1 0 2 ALDH5A1 chr6:24532347 3'AG 24532347 Downstream 8bp 36277 chr6 24532354 24532354 1 + A G COAD 24532354 + 24532334 24532374 41 TTAACTTTGGCAGGTTCGATACAGAGGAGGAGGCTATAGCA TTAACTTTGGCAGGTTCGATGCAGAGGAGGAGGCTATAGCA Direct Gain 0 0.956662181989202 NA NA prediction 0.913324363978404 Functional Gain - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24532354 chr6:24532354 nonsynonymous SNV 0.665 3 21 hm7G_associated_SNPs_39395 0 0 1 0 2 ALDH5A1 chr6:24532405 5'GT 24532405 Upstream 52bp 36278 chr19 38865535 38865535 1 + C G CESC 38865535 + 38865515 38865555 41 ACCGGCATGTACGAGCAACTCAAGGGCGAGTGGAACCGTAA ACCGGCATGTACGAGCAACTGAAGGGCGAGTGGAACCGTAA Direct Gain 0 0.956578092277034 NA NA prediction 0.913156184554069 Functional Gain - PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38865535 chr19:38865535 synonymous SNV . 0 21 hm7G_associated_SNPs_39397 0 0 1 0 1 PSMD8 chr19:38865601 5'GT 38865601 Upstream 67bp 36279 chr22 42059689 42059689 1 + A G STAD 42059689 + 42059669 42059709 41 AGAAGAGGAGCTGAAGACCCACATCAGCAAGGGTACGCTGG AGAAGAGGAGCTGAAGACCCGCATCAGCAAGGGTACGCTGG Direct Gain 0 0.956546258216014 NA NA prediction 0.913092516432027 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42059689 chr22:42059689 nonsynonymous SNV 0.631 2 21 hm7G_associated_SNPs_39398 0 0 1 1 1 XRCC6 chr22:42059626 3'AG 42059626 Downstream 64bp 36280 chr1 43166508 43166508 1 + A G BRCA 43166508 + 43166488 43166528 41 CAATGAAGAAGATAAAGAAAATCAAGGAGATGAGACCCAAG CAATGAAGAAGATAAAGAAAGTCAAGGAGATGAGACCCAAG Direct Gain 0 0.956411256448101 NA NA prediction 0.912822512896202 Functional Gain - YBX1 ENSG00000065978 CDS Human protein_coding chr1:43166508 chr1:43166508 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39399 0 0 0 0 1 YBX1 chr1:43166452 3'AG 43166452 Downstream 57bp 36281 chr9 116038905 116038905 1 + A G LIHC 116038905 + 116038885 116038925 41 ATCTATTATGGAAGTTTGGAAGAGAAGGAGAGGGAGCGTCT ATCTATTATGGAAGTTTGGAGGAGAAGGAGAGGGAGCGTCT Direct Gain 0 0.956185044417723 NA NA prediction 0.912370088835446 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116038905 chr9:116038905 synonymous SNV . 0 21 hm7G_associated_SNPs_39402 0 0 1 0 2 PRPF4 chr9:116038825 3'AG 116038825 Downstream 81bp 36282 chr9 116038905 116038905 1 + A G LIHC 116038905 + 116038885 116038925 41 ATCTATTATGGAAGTTTGGAAGAGAAGGAGAGGGAGCGTCT ATCTATTATGGAAGTTTGGAGGAGAAGGAGAGGGAGCGTCT Direct Gain 0 0.956185044417723 NA NA prediction 0.912370088835446 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116038905 chr9:116038905 synonymous SNV . 0 21 hm7G_associated_SNPs_39402 0 0 1 0 2 PRPF4 chr9:116038828 3'AG 116038828 Downstream 78bp 36283 chr2 70131394 70131394 1 + T G UCEC 70131394 + 70131374 70131414 41 TTCTCATCATAGGCAGTACATGAATCGAAAAGGTGGATTCA TTCTCATCATAGGCAGTACAGGAATCGAAAAGGTGGATTCA Direct Gain 0 0.956175745937715 NA NA prediction 0.912351491875431 Functional Gain - SNRNP27 ENSG00000124380 CDS Human protein_coding chr2:70131394 chr2:70131394 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39403 0 0 1 0 1 SNRNP27 chr2:70131386 3'AG 70131386 Downstream 9bp 36284 chr1 15959945 15959945 1 + A G LUAD 15959945 + 15959925 15959965 41 TTTTTGTAGAGAAATTTTCTAGAGTCCTGGTGGAGCAGCAG TTTTTGTAGAGAAATTTTCTGGAGTCCTGGTGGAGCAGCAG Direct Gain 0 0.956169970871563 NA NA prediction 0.912339941743127 Functional Gain - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15959945 chr1:15959945 nonsynonymous SNV 0.983 0 21 hm7G_associated_SNPs_39404 0 0 1 0 1 DDI2 chr1:15959934 3'AG 15959934 Downstream 12bp 36285 chr14 93277978 93277978 1 + A G COAD 93277978 + 93277958 93277998 41 TACACTGGCCGAAAGAAAATACTCAGATGAGAAGAAGAGGG TACACTGGCCGAAAGAAAATGCTCAGATGAGAAGAAGAGGG Direct Gain 0 0.95615052079885 NA NA prediction 0.912301041597699 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93277978 chr14:93277978 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_39406 0 0 1 0 1 GOLGA5 chr14:93277896 3'AG 93277896 Downstream 83bp 36286 chr12 7064379 7064379 1 + C G HNSC 7064379 + 7064359 7064399 41 ACGGACCTGGTGGAGCATTTCAAGAAGACGGGGATTGAGGA ACGGACCTGGTGGAGCATTTGAAGAAGACGGGGATTGAGGA Direct Gain 0 0.956122205981418 NA NA prediction 0.912244411962837 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7064379 chr12:7064379 nonsynonymous SNV 0.928 3 21 hm7G_associated_SNPs_39407 0 0 0 0 1 PTPN6 chr12:7064430 5'GT 7064430 Upstream 52bp 36287 chr12 6575152 6575152 1 - T C ACC 6575152 - 6575132 6575172 41 CCTCAGGTGGTGGACATCATACGTGTGAACGTGGACAAGGT CCTCAGGTGGTGGACATCATGCGTGTGAACGTGGACAAGGT Direct Gain 0 0.956104860318948 NA NA prediction 0.912209720637896 Functional Gain - VAMP1 ENSG00000139190 CDS Human protein_coding chr12:6575152 chr12:6575152 nonsynonymous SNV 0.991 0 21 hm7G_associated_SNPs_39408 0 0 1 0 1 VAMP1 chr12:6575166 3'AG 6575166 Downstream 15bp 36288 chr6 144181605 144181605 1 + A G UCEC 144181605 + 144181585 144181625 41 ATGAAATTGGAGCTCTGGATAATGCAGAATTGGAAGGTTCT ATGAAATTGGAGCTCTGGATGATGCAGAATTGGAAGGTTCT Direct Gain 0 0.956076340064933 NA NA prediction 0.912152680129866 Functional Gain - LTV1 ENSG00000135521 CDS Human protein_coding chr6:144181605 chr6:144181605 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39410 0 0 1 0 2 LTV1 chr6:144181563 3'AG 144181563 Downstream 43bp 36289 chr6 144181605 144181605 1 + A G UCEC 144181605 + 144181585 144181625 41 ATGAAATTGGAGCTCTGGATAATGCAGAATTGGAAGGTTCT ATGAAATTGGAGCTCTGGATGATGCAGAATTGGAAGGTTCT Direct Gain 0 0.956076340064933 NA NA prediction 0.912152680129866 Functional Gain - LTV1 ENSG00000135521 CDS Human protein_coding chr6:144181605 chr6:144181605 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39410 0 0 1 0 2 LTV1 chr6:144181690 5'GT 144181690 Upstream 86bp 36290 chr1 25817913 25817913 1 + T G UCEC 25817913 + 25817893 25817933 41 ATTGATAGGAGCTTCGGAAATATAAGGAAAATGAGAAGGAC ATTGATAGGAGCTTCGGAAAGATAAGGAAAATGAGAAGGAC Direct Gain 0 0.956062649276624 NA NA prediction 0.912125298553247 Functional Gain - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25817913 chr1:25817913 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_39411 0 0 0 0 1 TMEM57 chr1:25817901 3'AG 25817901 Downstream 13bp 36291 chr17 35376321 35376321 1 + A G UCEC 35376321 + 35376301 35376341 41 TAGCTCCTTCGAGAACTCATAGAACGGAAGACCAGCTCCTT TAGCTCCTTCGAGAACTCATGGAACGGAAGACCAGCTCCTT Direct Gain 0 0.956041621653686 NA NA prediction 0.912083243307371 Functional Gain - AATF ENSG00000108270 CDS Human other chr17:35376321 chr17:35376321 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39412 0 0 1 1 2 AATF chr17:35376304 3'AG 35376304 Downstream 18bp 36292 chr17 35376321 35376321 1 + A G UCEC 35376321 + 35376301 35376341 41 TAGCTCCTTCGAGAACTCATAGAACGGAAGACCAGCTCCTT TAGCTCCTTCGAGAACTCATGGAACGGAAGACCAGCTCCTT Direct Gain 0 0.956041621653686 NA NA prediction 0.912083243307371 Functional Gain - AATF ENSG00000108270 CDS Human other chr17:35376321 chr17:35376321 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39412 0 0 1 1 2 AATF chr17:35376371 5'GT 35376371 Upstream 51bp 36293 chr7 100802398 100802398 1 + T G UCEC 100802398 + 100802378 100802418 41 CTACTTCATCCTGGATGAGTTTTTGATGGGGGGGGATGTCC CTACTTCATCCTGGATGAGTGTTTGATGGGGGGGGATGTCC Direct Gain 0 0.95602248717033 NA NA prediction 0.91204497434066 Functional Gain - AP1S1 ENSG00000106367 CDS Human protein_coding chr7:100802398 chr7:100802398 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39413 0 0 1 0 2 AP1S1 chr7:100802340 3'AG 100802340 Downstream 59bp 36294 chr7 100802398 100802398 1 + T G UCEC 100802398 + 100802378 100802418 41 CTACTTCATCCTGGATGAGTTTTTGATGGGGGGGGATGTCC CTACTTCATCCTGGATGAGTGTTTGATGGGGGGGGATGTCC Direct Gain 0 0.95602248717033 NA NA prediction 0.91204497434066 Functional Gain - AP1S1 ENSG00000106367 CDS Human protein_coding chr7:100802398 chr7:100802398 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39413 0 0 1 0 2 AP1S1 chr7:100802477 5'GT 100802477 Upstream 80bp 36295 chr3 37089120 37089120 1 + T G UCEC 37089120 + 37089100 37089140 41 GCTGAATACATTGTTGAGTTTCTGAAGAAGAAGGCTGAGAT GCTGAATACATTGTTGAGTTGCTGAAGAAGAAGGCTGAGAT Direct Gain 0 0.955989827105425 NA NA prediction 0.91197965421085 Functional Gain - MLH1 ENSG00000076242 CDS Human protein_coding chr3:37089120 chr3:37089120 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39415 0 0 1 0 1 MLH1 chr3:37089174 5'GT 37089174 Upstream 55bp 36296 chrX 128709906 128709906 1 + A G UCEC 128709906 + 128709886 128709926 41 AATGTGAAGTTTCGGCAACTACAAAAGGAGAAGTTCCAGAT AATGTGAAGTTTCGGCAACTGCAAAAGGAGAAGTTCCAGAT Direct Gain 0 0.95597160139729 NA NA prediction 0.91194320279458 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128709906 chrX:128709906 synonymous SNV . 0 21 hm7G_associated_SNPs_39416 0 0 1 0 1 OCRL chrX:128709874 3'AG 128709874 Downstream 33bp 36297 chr14 52471144 52471144 1 + A G STAD 52471144 + 52471124 52471164 41 ATAGAGGAGCTCAGAGAGCTACAGACAAAAATCAACGAAGC ATAGAGGAGCTCAGAGAGCTGCAGACAAAAATCAACGAAGC Direct Gain 0 0.95591076195172 NA NA prediction 0.911821523903441 Functional Gain - C14orf166 ENSG00000087302 CDS Human protein_coding chr14:52471144 chr14:52471144 synonymous SNV . 0 21 hm7G_associated_SNPs_39417 0 0 1 0 1 C14orf166 chr14:52471080 3'AG 52471080 Downstream 65bp 36298 chr17 57322862 57322862 1 + A G rs568539174 57322862 + 57322842 57322882 41 GTGTCACATGATGAGAATCTAAAGAGAGCAACTGGGGTCAA GTGTCACATGATGAGAATCTGAAGAGAGCAACTGGGGTCAA Direct Gain 0 0.955818693758567 NA NA prediction 0.911637387517133 Functional Gain - GDPD1 ENSG00000153982 CDS Human protein_coding chr17:57322862 chr17:57322862 synonymous SNV . 0 21 hm7G_associated_SNPs_39418 0 0 1 0 2 GDPD1 chr17:57322775 3'AG 57322775 Downstream 88bp 36299 chr17 57322862 57322862 1 + A G rs568539174 57322862 + 57322842 57322882 41 GTGTCACATGATGAGAATCTAAAGAGAGCAACTGGGGTCAA GTGTCACATGATGAGAATCTGAAGAGAGCAACTGGGGTCAA Direct Gain 0 0.955818693758567 NA NA prediction 0.911637387517133 Functional Gain - GDPD1 ENSG00000153982 CDS Human protein_coding chr17:57322862 chr17:57322862 synonymous SNV . 0 21 hm7G_associated_SNPs_39418 0 0 1 0 2 GDPD1 chr17:57322910 5'GT 57322910 Upstream 49bp 36300 chr17 66252013 66252013 1 + A G LIHC 66252013 + 66251993 66252033 41 CTTCAGCATTGTAGAAAGATACAAAGTAAGTTGGGGGGTGG CTTCAGCATTGTAGAAAGATGCAAAGTAAGTTGGGGGGTGG Direct Gain 0 0.955773333770554 NA NA prediction 0.911546667541108 Functional Gain - AMZ2 ENSG00000196704 CDS Human protein_coding chr17:66252013 chr17:66252013 nonsynonymous SNV 0.460 3 21 hm7G_associated_SNPs_39420 0 0 0 0 1 AMZ2 chr17:66252017 5'GT 66252017 Upstream 5bp 36301 chr16 90103732 90103732 1 + C G HNSC 90103732 + 90103712 90103752 41 AAGCGCCTGGCAGACCCTCTCCAGAAGGCTCGGGAGGAGAT AAGCGCCTGGCAGACCCTCTGCAGAAGGCTCGGGAGGAGAT Direct Gain 0 0.955710327519325 NA NA prediction 0.91142065503865 Functional Gain - GAS8 ENSG00000141013 CDS Human protein_coding chr16:90103732 chr16:90103732 synonymous SNV . 0 21 hm7G_associated_SNPs_39422 0 0 1 1 1 GAS8 chr16:90103640 3'AG 90103640 Downstream 93bp 36302 chr16 67042973 67042973 1 + C G HNSC 67042973 + 67042953 67042993 41 ACAAGAGTGGGCATGAAGCTCAAGGAGAAGAAGATGGCTTT ACAAGAGTGGGCATGAAGCTGAAGGAGAAGAAGATGGCTTT Direct Gain 0 0.955646993365636 NA NA prediction 0.911293986731273 Functional Gain - CES4A ENSG00000172824 CDS Human protein_coding chr16:67042973 chr16:67042973 synonymous SNV . 0 21 hm7G_associated_SNPs_39423 0 0 0 0 1 CES4A chr16:67042877 3'AG 67042877 Downstream 97bp 36303 chr7 39610125 39610125 1 + A G ESCA 39610125 + 39610105 39610145 41 GAAGGTTATAGAGATGGAATAGATGCTGGCAAAGCAGTTAC GAAGGTTATAGAGATGGAATGGATGCTGGCAAAGCAGTTAC Direct Gain 0 0.955637506628478 NA NA prediction 0.911275013256956 Functional Gain - YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39610125 chr7:39610125 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39424 0 0 1 0 1 YAE1D1 chr7:39610105 3'AG 39610105 Downstream 21bp 36304 chr5 89791518 89791518 1 + A G GBM 89791518 + 89791498 89791538 41 TGAAAGGTATAGTAAAAGATACATGAAGGTATACAAGGAAG TGAAAGGTATAGTAAAAGATGCATGAAGGTATACAAGGAAG Direct Gain 0 0.95558590533093 NA NA prediction 0.911171810661861 Functional Gain - POLR3G ENSG00000113356 CDS Human protein_coding chr5:89791518 chr5:89791518 nonsynonymous SNV 0.987 2 21 hm7G_associated_SNPs_39426 0 0 1 0 2 POLR3G chr5:89791494 3'AG 89791494 Downstream 25bp 36305 chr5 89791518 89791518 1 + A G GBM 89791518 + 89791498 89791538 41 TGAAAGGTATAGTAAAAGATACATGAAGGTATACAAGGAAG TGAAAGGTATAGTAAAAGATGCATGAAGGTATACAAGGAAG Direct Gain 0 0.95558590533093 NA NA prediction 0.911171810661861 Functional Gain - POLR3G ENSG00000113356 CDS Human protein_coding chr5:89791518 chr5:89791518 nonsynonymous SNV 0.987 2 21 hm7G_associated_SNPs_39426 0 0 1 0 2 POLR3G chr5:89791550 5'GT 89791550 Upstream 33bp 36306 chr10 70922222 70922222 1 + A G STAD 70922222 + 70922202 70922242 41 TTATTAGTAAGAATAAAAATACAACATATGGAGTTACAGCT TTATTAGTAAGAATAAAAATGCAACATATGGAGTTACAGCT Direct Gain 0 0.955555538035077 NA NA prediction 0.911111076070154 Functional Gain - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70922222 chr10:70922222 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39427 0 0 1 0 2 VPS26A chr10:70922162 3'AG 70922162 Downstream 61bp 36307 chr10 70922222 70922222 1 + A G STAD 70922222 + 70922202 70922242 41 TTATTAGTAAGAATAAAAATACAACATATGGAGTTACAGCT TTATTAGTAAGAATAAAAATGCAACATATGGAGTTACAGCT Direct Gain 0 0.955555538035077 NA NA prediction 0.911111076070154 Functional Gain - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70922222 chr10:70922222 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39427 0 0 1 0 2 VPS26A chr10:70922268 5'GT 70922268 Upstream 47bp 36308 chr6 88767400 88767400 1 + A G rs145923815 88767400 + 88767380 88767420 41 TCCAAGTGTGTTGTACGGGTAGAAGAATGCCGTGGACCAAC TCCAAGTGTGTTGTACGGGTGGAAGAATGCCGTGGACCAAC Direct Gain 0 0.955524808749268 NA NA prediction 0.911049617498537 Functional Gain - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88767400 chr6:88767400 synonymous SNV . 0 21 hm7G_associated_SNPs_39428 0 0 0 0 2 SPACA1 chr6:88767330 3'AG 88767330 Downstream 71bp 36309 chr6 88767400 88767400 1 + A G rs145923815 88767400 + 88767380 88767420 41 TCCAAGTGTGTTGTACGGGTAGAAGAATGCCGTGGACCAAC TCCAAGTGTGTTGTACGGGTGGAAGAATGCCGTGGACCAAC Direct Gain 0 0.955524808749268 NA NA prediction 0.911049617498537 Functional Gain - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88767400 chr6:88767400 synonymous SNV . 0 21 hm7G_associated_SNPs_39428 0 0 0 0 2 SPACA1 chr6:88767431 5'GT 88767431 Upstream 32bp 36310 chr19 535919 535919 1 + A G UCEC 535919 + 535899 535939 41 GATGTGGCACCCTAACATCTACGAGGTGAGCGCGGCCCCCA GATGTGGCACCCTAACATCTGCGAGGTGAGCGCGGCCCCCA Direct Gain 0 0.955509016769516 NA NA prediction 0.911018033539032 Functional Gain - CDC34 ENSG00000099804 CDS Human protein_coding chr19:535919 chr19:535919 nonsynonymous SNV 0.660 4 21 hm7G_associated_SNPs_39429 0 0 1 0 2 CDC34 chr19:535837 3'AG 535837 Downstream 83bp 36311 chr19 535919 535919 1 + A G UCEC 535919 + 535899 535939 41 GATGTGGCACCCTAACATCTACGAGGTGAGCGCGGCCCCCA GATGTGGCACCCTAACATCTGCGAGGTGAGCGCGGCCCCCA Direct Gain 0 0.955509016769516 NA NA prediction 0.911018033539032 Functional Gain - CDC34 ENSG00000099804 CDS Human protein_coding chr19:535919 chr19:535919 nonsynonymous SNV 0.660 4 21 hm7G_associated_SNPs_39429 0 0 1 0 2 CDC34 chr19:535923 5'GT 535923 Upstream 5bp 36312 chr4 140587225 140587225 1 + C G BLCA 140587225 + 140587205 140587245 41 TCTCTATTCTCTCGGCCTGTCAGCAAAGTAAGAGGCATGGG TCTCTATTCTCTCGGCCTGTGAGCAAAGTAAGAGGCATGGG Direct Gain 0 0.955418238785176 NA NA prediction 0.910836477570352 Functional Gain - MGST2 ENSG00000085871 CDS Human protein_coding chr4:140587225 chr4:140587225 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39432 0 0 1 1 1 MGST2 chr4:140587231 5'GT 140587231 Upstream 7bp 36313 chr1 171755174 171755174 1 + A G LUAD 171755174 + 171755154 171755194 41 TCCAAGCTGAGCTGTCGGCTAGAGTCATGGAGCTGGCCCCA TCCAAGCTGAGCTGTCGGCTGGAGTCATGGAGCTGGCCCCA Direct Gain 0 0.955348250698096 NA NA prediction 0.910696501396191 Functional Gain - METTL13 ENSG00000010165 CDS Human protein_coding chr1:171755174 chr1:171755174 nonsynonymous SNV 0.868 0 21 hm7G_associated_SNPs_39434 0 0 1 0 1 METTL13 chr1:171755218 5'GT 171755218 Upstream 45bp 36314 chr3 62317005 62317005 1 + A G rs35261777 62317005 + 62316985 62317025 41 CGATATCTGTTACAGGATATAGAAGCAGCAGAAAAGTCACT CGATATCTGTTACAGGATATGGAAGCAGCAGAAAAGTCACT Direct Gain 0 0.95533092889288 NA NA prediction 0.910661857785761 Functional Gain - C3orf14 ENSG00000114405 CDS Human protein_coding chr3:62317005 chr3:62317005 nonsynonymous SNV 0.792 1 21 hm7G_associated_SNPs_39435 0 0 0 0 2 C3orf14 chr3:62317000 3'AG 62317000 Downstream 6bp 36315 chr3 62317005 62317005 1 + A G rs35261777 62317005 + 62316985 62317025 41 CGATATCTGTTACAGGATATAGAAGCAGCAGAAAAGTCACT CGATATCTGTTACAGGATATGGAAGCAGCAGAAAAGTCACT Direct Gain 0 0.95533092889288 NA NA prediction 0.910661857785761 Functional Gain - C3orf14 ENSG00000114405 CDS Human protein_coding chr3:62317005 chr3:62317005 nonsynonymous SNV 0.792 1 21 hm7G_associated_SNPs_39435 0 0 0 0 2 C3orf14 chr3:62317074 5'GT 62317074 Upstream 70bp 36316 chr6 139097263 139097263 1 + A G LIHC 139097263 + 139097243 139097283 41 AAGGAACTTAAAACAATGGAAGAGCGGAAAGTGAAGAGGAG AAGGAACTTAAAACAATGGAGGAGCGGAAAGTGAAGAGGAG Direct Gain 0 0.955299286390817 NA NA prediction 0.910598572781634 Functional Gain - CCDC28A ENSG00000024862 CDS Human protein_coding chr6:139097263 chr6:139097263 synonymous SNV . 0 21 hm7G_associated_SNPs_39436 0 0 1 0 1 CCDC28A chr6:139097216 3'AG 139097216 Downstream 48bp 36317 chr15 51975601 51975601 1 + A G STAD 51975601 + 51975581 51975621 41 TGATCGATGATTATGACTCTACTAAGAGTGGATTGGATCAT TGATCGATGATTATGACTCTGCTAAGAGTGGATTGGATCAT Direct Gain 0 0.955290178733325 NA NA prediction 0.91058035746665 Functional Gain - SCG3 ENSG00000104112 CDS Human protein_coding chr15:51975601 chr15:51975601 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_39437 0 0 0 0 1 SCG3 chr15:51975631 5'GT 51975631 Upstream 31bp 36318 chr12 16043540 16043540 1 + T G ESCA 16043540 + 16043520 16043560 41 TGTGTTTTCAGGATAGTAATTATTTGTTAACCGGGGGACAG TGTGTTTTCAGGATAGTAATGATTTGTTAACCGGGGGACAG Direct Gain 0 0.955211866701588 NA NA prediction 0.910423733403176 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16043540 chr12:16043540 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39438 0 0 1 0 2 STRAP chr12:16043531 3'AG 16043531 Downstream 10bp 36319 chr12 16043540 16043540 1 + T G ESCA 16043540 + 16043520 16043560 41 TGTGTTTTCAGGATAGTAATTATTTGTTAACCGGGGGACAG TGTGTTTTCAGGATAGTAATGATTTGTTAACCGGGGGACAG Direct Gain 0 0.955211866701588 NA NA prediction 0.910423733403176 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16043540 chr12:16043540 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39438 0 0 1 0 2 STRAP chr12:16043603 5'GT 16043603 Upstream 64bp 36320 chr13 43652761 43652761 1 + A G SKCM 43652761 + 43652741 43652781 41 TATACAGAGCTTTTCATCCTACTATAAAGGAGGATTTGAAC TATACAGAGCTTTTCATCCTGCTATAAAGGAGGATTTGAAC Direct Gain 0 0.955098668454295 NA NA prediction 0.910197336908591 Functional Gain - DNAJC15 ENSG00000120675 CDS Human protein_coding chr13:43652761 chr13:43652761 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39444 0 0 1 0 2 DNAJC15 chr13:43652748 3'AG 43652748 Downstream 14bp 36321 chr13 43652761 43652761 1 + A G SKCM 43652761 + 43652741 43652781 41 TATACAGAGCTTTTCATCCTACTATAAAGGAGGATTTGAAC TATACAGAGCTTTTCATCCTGCTATAAAGGAGGATTTGAAC Direct Gain 0 0.955098668454295 NA NA prediction 0.910197336908591 Functional Gain - DNAJC15 ENSG00000120675 CDS Human protein_coding chr13:43652761 chr13:43652761 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39444 0 0 1 0 2 DNAJC15 chr13:43652824 5'GT 43652824 Upstream 64bp 36322 chr14 89038443 89038443 1 + T G UCEC 89038443 + 89038423 89038463 41 GCCTTCAAACAAGAGCAATTTCAGTCGGGGAGATGAGAGGA GCCTTCAAACAAGAGCAATTGCAGTCGGGGAGATGAGAGGA Direct Gain 0 0.955023511446859 NA NA prediction 0.910047022893717 Functional Gain - ZC3H14 ENSG00000100722 CDS Human protein_coding chr14:89038443 chr14:89038443 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_39448 0 0 1 0 1 ZC3H14 chr14:89038374 3'AG 89038374 Downstream 70bp 36323 chr6 170878708 170878708 1 + A G UCEC 170878708 + 170878688 170878728 41 TCCTTTCCCTAGTGAAGAACAGTCCAGACTGGCAGCAAGAA TCCTTTCCCTAGTGAAGAACGGTCCAGACTGGCAGCAAGAA Direct Gain 0 0.954977552991857 NA NA prediction 0.909955105983714 Functional Gain - TBP ENSG00000112592 CDS Human protein_coding chr6:170878708 chr6:170878708 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39450 0 0 1 0 1 TBP chr6:170878700 3'AG 170878700 Downstream 9bp 36324 chr3 52233311 52233311 1 + T G KIRC 52233311 + 52233291 52233331 41 TCCCGAGTCCCCCAGGCCTTTCTGCAGAAAGCAGGCAAATC TCCCGAGTCCCCCAGGCCTTGCTGCAGAAAGCAGGCAAATC Direct Gain 0 0.954972860993011 NA NA prediction 0.909945721986022 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233311 chr3:52233311 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39451 0 0 1 0 2 ALAS1 chr3:52233226 3'AG 52233226 Downstream 86bp 36325 chr3 52233311 52233311 1 + T G KIRC 52233311 + 52233291 52233331 41 TCCCGAGTCCCCCAGGCCTTTCTGCAGAAAGCAGGCAAATC TCCCGAGTCCCCCAGGCCTTGCTGCAGAAAGCAGGCAAATC Direct Gain 0 0.954972860993011 NA NA prediction 0.909945721986022 Functional Gain - ALAS1 ENSG00000023330 CDS Human protein_coding chr3:52233311 chr3:52233311 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39451 0 0 1 0 2 ALAS1 chr3:52233237 3'AG 52233237 Downstream 75bp 36326 chr4 83987594 83987594 1 + C G SARC 83987594 + 83987574 83987614 41 TCTTATTTATGTTTAAGGTTCCAGCATCTTGGACAGAGCTG TCTTATTTATGTTTAAGGTTGCAGCATCTTGGACAGAGCTG Direct Gain 0 0.954960654160261 NA NA prediction 0.909921308320522 Functional Gain - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83987594 chr4:83987594 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_39453 0 0 1 0 1 COPS4 chr4:83987591 3'AG 83987591 Downstream 4bp 36327 chr15 44093743 44093743 1 + C G CESC 44093743 + 44093723 44093763 41 GAACTGGCAAAAGTCACTATCAAGAAGGAAGATCTGGAGCT GAACTGGCAAAAGTCACTATGAAGAAGGAAGATCTGGAGCT Direct Gain 0 0.954945913076641 NA NA prediction 0.909891826153283 Functional Gain - HYPK ENSG00000140264;ENSG00000242028 CDS Human other chr15:44093743 chr15:44093743 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39454 0 0 1 0 2 HYPK chr15:44093716 3'AG 44093716 Downstream 28bp 36328 chr15 44093743 44093743 1 + C G CESC 44093743 + 44093723 44093763 41 GAACTGGCAAAAGTCACTATCAAGAAGGAAGATCTGGAGCT GAACTGGCAAAAGTCACTATGAAGAAGGAAGATCTGGAGCT Direct Gain 0 0.954945913076641 NA NA prediction 0.909891826153283 Functional Gain - HYPK ENSG00000140264;ENSG00000242028 CDS Human other chr15:44093743 chr15:44093743 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39454 0 0 1 0 2 HYPK chr15:44093767 5'GT 44093767 Upstream 25bp 36329 chr4 146467918 146467918 1 + A G GBM 146467918 + 146467898 146467938 41 TATTGTCTACTATGAGCTCAACAATCGTGTGGGTGAAGCGT TATTGTCTACTATGAGCTCAGCAATCGTGTGGGTGAAGCGT Direct Gain 0 0.954945342462464 NA NA prediction 0.909890684924928 Functional Gain - SMAD1 ENSG00000170365 CDS Human protein_coding chr4:146467918 chr4:146467918 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39455 0 0 1 0 1 SMAD1 chr4:146467855 3'AG 146467855 Downstream 64bp 36330 chrX 128880306 128880306 1 + C G MESO 128880306 + 128880286 128880326 41 ATGGACTGCAACTGGGAGCTCCATAAGGAAGGTAGAAGGGC ATGGACTGCAACTGGGAGCTGCATAAGGAAGGTAGAAGGGC Direct Gain 0 0.954873309887629 NA NA prediction 0.909746619775258 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128880306 chrX:128880306 synonymous SNV . 0 21 hm7G_associated_SNPs_39456 0 0 0 0 2 XPNPEP2 chrX:128880212 3'AG 128880212 Downstream 95bp 36331 chrX 128880306 128880306 1 + C G MESO 128880306 + 128880286 128880326 41 ATGGACTGCAACTGGGAGCTCCATAAGGAAGGTAGAAGGGC ATGGACTGCAACTGGGAGCTGCATAAGGAAGGTAGAAGGGC Direct Gain 0 0.954873309887629 NA NA prediction 0.909746619775258 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128880306 chrX:128880306 synonymous SNV . 0 21 hm7G_associated_SNPs_39456 0 0 0 0 2 XPNPEP2 chrX:128880316 5'GT 128880316 Upstream 11bp 36332 chr12 6879330 6879330 1 + A G COAD 6879330 + 6879310 6879350 41 TCTGGCTCCTCAGATGAGGAAGAAGAAGAAGAGGATGATGA TCTGGCTCCTCAGATGAGGAGGAAGAAGAAGAGGATGATGA Direct Gain 0 0.954843121354464 NA NA prediction 0.909686242708927 Functional Gain - PTMS ENSG00000159335 CDS Human protein_coding chr12:6879330 chr12:6879330 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39458 0 0 1 0 2 PTMS chr12:6879323 3'AG 6879323 Downstream 8bp 36333 chr12 6879330 6879330 1 + A G COAD 6879330 + 6879310 6879350 41 TCTGGCTCCTCAGATGAGGAAGAAGAAGAAGAGGATGATGA TCTGGCTCCTCAGATGAGGAGGAAGAAGAAGAGGATGATGA Direct Gain 0 0.954843121354464 NA NA prediction 0.909686242708927 Functional Gain - PTMS ENSG00000159335 CDS Human protein_coding chr12:6879330 chr12:6879330 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39458 0 0 1 0 2 PTMS chr12:6879384 5'GT 6879384 Upstream 55bp 36334 chr3 113652367 113652367 1 + A G rs145584975 113652367 + 113652347 113652387 41 TACTTTGGCAGACACTGTATAAAGAAAGTCGGGAAGCACGA TACTTTGGCAGACACTGTATGAAGAAAGTCGGGAAGCACGA Direct Gain 0 0.954842710180382 NA NA prediction 0.909685420360765 Functional Gain - GRAMD1C ENSG00000178075 CDS Human protein_coding chr3:113652367 chr3:113652367 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39459 0 0 0 0 1 GRAMD1C chr3:113652358 3'AG 113652358 Downstream 10bp 36335 chr11 57428263 57428263 1 + C G CESC 57428263 + 57428243 57428283 41 TCTCGTTTAGCAGATGTGTTCAACCAAAGGTGTGAGGTGAA TCTCGTTTAGCAGATGTGTTGAACCAAAGGTGTGAGGTGAA Direct Gain 0 0.954775329704124 NA NA prediction 0.909550659408248 Functional Gain - CLP1 ENSG00000172409 CDS Human protein_coding chr11:57428263 chr11:57428263 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39461 0 0 0 0 1 CLP1 chr11:57428237 3'AG 57428237 Downstream 27bp 36336 chr5 140085217 140085217 1 + A G LGG 140085217 + 140085197 140085237 41 GGAGGAAAAGGCCAAAGCGTACAAGAAAGAGAAACAGAAGG GGAGGAAAAGGCCAAAGCGTGCAAGAAAGAGAAACAGAAGG Direct Gain 0 0.954773008028577 NA NA prediction 0.909546016057155 Functional Gain - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140085217 chr5:140085217 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_39462 0 0 1 0 1 ZMAT2 chr5:140085198 3'AG 140085198 Downstream 20bp 36337 chr8 128750579 128750579 1 + A G UCEC 128750579 + 128750559 128750599 41 CTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACT CTCGGTGCAGCCGTATTTCTGCTGCGACGAGGAGGAGAACT Direct Gain 0 0.954767899396831 NA NA prediction 0.909535798793663 Functional Gain - MYC ENSG00000136997 CDS Human protein_coding chr8:128750579 chr8:128750579 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39463 0 0 1 0 2 MYC chr8:128750494 3'AG 128750494 Downstream 86bp 36338 chr8 128750579 128750579 1 + A G UCEC 128750579 + 128750559 128750599 41 CTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACT CTCGGTGCAGCCGTATTTCTGCTGCGACGAGGAGGAGAACT Direct Gain 0 0.954767899396831 NA NA prediction 0.909535798793663 Functional Gain - MYC ENSG00000136997 CDS Human protein_coding chr8:128750579 chr8:128750579 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39463 0 0 1 0 2 MYC chr8:128750497 3'AG 128750497 Downstream 83bp 36339 chrX 48433607 48433607 1 + C G CESC 48433607 + 48433587 48433627 41 AAGCTCTTCGTGGGAGGGCTCAACTTTAACACCGACGAGCA AAGCTCTTCGTGGGAGGGCTGAACTTTAACACCGACGAGCA Direct Gain 0 0.954719613264069 NA NA prediction 0.909439226528138 Functional Gain - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48433607 chrX:48433607 synonymous SNV . 0 21 hm7G_associated_SNPs_39464 0 0 1 0 1 RBM3 chrX:48433556 3'AG 48433556 Downstream 52bp 36340 chr12 49314994 49314994 1 + A G rs4760600 49314994 + 49314974 49315014 41 GGAGAATTTCTGGAAAAGGTACAACAAAGTGAAACTGGAGC GGAGAATTTCTGGAAAAGGTGCAACAAAGTGAAACTGGAGC Direct Gain 0 0.95471212792139 NA NA prediction 0.909424255842781 Functional Gain - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49314994 chr12:49314994 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39465 1 0 0 0 1 CCDC65 chr12:49314951 3'AG 49314951 Downstream 44bp 36341 chr11 118277667 118277667 1 + C G HNSC 118277667 + 118277647 118277687 41 TCCAGCTGCTGTGACTTACTCGAAGCCTCGATTGGCCACAT TCCAGCTGCTGTGACTTACTGGAAGCCTCGATTGGCCACAT Direct Gain 0 0.954686975780437 NA NA prediction 0.909373951560874 Functional Gain - ATP5L ENSG00000167283 CDS Human protein_coding chr11:118277667 chr11:118277667 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39466 0 0 1 0 1 ATP5L chr11:118277652 3'AG 118277652 Downstream 16bp 36342 chr4 128688369 128688369 1 + A G HNSC 128688369 + 128688349 128688389 41 TATTTTGGAGCTTATGACACAGTTAAGGTAATCTGGGGGCT TATTTTGGAGCTTATGACACGGTTAAGGTAATCTGGGGGCT Direct Gain 0 0.954683738401483 NA NA prediction 0.909367476802966 Functional Gain - SLC25A31 ENSG00000151475 CDS Human protein_coding chr4:128688369 chr4:128688369 synonymous SNV . 0 21 hm7G_associated_SNPs_39467 0 0 0 0 1 SLC25A31 chr4:128688375 5'GT 128688375 Upstream 7bp 36343 chr12 75884201 75884201 1 + A G STAD 75884201 + 75884181 75884221 41 TTCAGGTTGTTTGGGCAGATAGTTACAAAGTTGGCTGCGCA TTCAGGTTGTTTGGGCAGATGGTTACAAAGTTGGCTGCGCA Direct Gain 0 0.954629924839878 NA NA prediction 0.909259849679756 Functional Gain - GLIPR1 ENSG00000139278 CDS Human protein_coding chr12:75884201 chr12:75884201 nonsynonymous SNV 0.887 4 21 hm7G_associated_SNPs_39468 0 0 0 0 1 GLIPR1 chr12:75884186 3'AG 75884186 Downstream 16bp 36344 chr19 12849348 12849348 1 + C G BLCA 12849348 + 12849328 12849368 41 CAGCCTGGCAGTCCAGCTCTCCAAGGGGCGTGAGAGTGTTC CAGCCTGGCAGTCCAGCTCTGCAAGGGGCGTGAGAGTGTTC Direct Gain 0 0.95460477837006 NA NA prediction 0.909209556740119 Functional Gain - ASNA1 ENSG00000198356 CDS Human protein_coding chr19:12849348 chr19:12849348 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_39469 0 0 1 0 1 ASNA1 chr19:12849325 3'AG 12849325 Downstream 24bp 36345 chr9 12694339 12694339 1 + C G KIRP 12694339 + 12694319 12694359 41 ACAACTGTGGGACGTGCCGTCCTGGCTGGAGAGGAGCTGCC ACAACTGTGGGACGTGCCGTGCTGGCTGGAGAGGAGCTGCC Direct Gain 0 0.954494327734173 NA NA prediction 0.908988655468346 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12694339 chr9:12694339 nonsynonymous SNV 0.939 2 21 hm7G_associated_SNPs_39470 0 0 0 0 1 TYRP1 chr9:12694381 5'GT 12694381 Upstream 43bp 36346 chr14 63757612 63757612 1 + A G STAD 63757612 + 63757592 63757632 41 TAAGATCGGAGCACAGTGCTACTTGGAATGTTCAGCTCTGA TAAGATCGGAGCACAGTGCTGCTTGGAATGTTCAGCTCTGA Direct Gain 0 0.954436815084559 NA NA prediction 0.908873630169118 Functional Gain - RHOJ ENSG00000126785 CDS Human protein_coding chr14:63757612 chr14:63757612 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39472 0 0 0 0 1 RHOJ chr14:63757596 3'AG 63757596 Downstream 17bp 36347 chr2 178081594 178081594 1 + A G LIHC 178081594 + 178081574 178081614 41 TTGTTTTTCCTCAGGAGGCTATGGTGGTGGAGGTGGTGGCA TTGTTTTTCCTCAGGAGGCTGTGGTGGTGGAGGTGGTGGCA Direct Gain 0 0.954435545513005 NA NA prediction 0.908871091026009 Functional Gain - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178081594 chr2:178081594 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39473 0 0 1 0 2 HNRNPA3 chr2:178081588 3'AG 178081588 Downstream 7bp 36348 chr2 178081594 178081594 1 + A G LIHC 178081594 + 178081574 178081614 41 TTGTTTTTCCTCAGGAGGCTATGGTGGTGGAGGTGGTGGCA TTGTTTTTCCTCAGGAGGCTGTGGTGGTGGAGGTGGTGGCA Direct Gain 0 0.954435545513005 NA NA prediction 0.908871091026009 Functional Gain - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178081594 chr2:178081594 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39473 0 0 1 0 2 HNRNPA3 chr2:178081668 5'GT 178081668 Upstream 75bp 36349 chr5 33461389 33461389 1 + C G BLCA 33461389 + 33461369 33461409 41 GAGATATCGAAGTATGGGATCAAGCTGAGAAAGTAAGTGGT GAGATATCGAAGTATGGGATGAAGCTGAGAAAGTAAGTGGT Direct Gain 0 0.954413410337965 NA NA prediction 0.908826820675931 Functional Gain - TARS ENSG00000113407 CDS Human protein_coding chr5:33461389 chr5:33461389 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39475 0 0 1 0 1 TARS chr5:33461400 5'GT 33461400 Upstream 12bp 36350 chr17 48596386 48596386 1 + A G GBM 48596386 + 48596366 48596406 41 CATGCACACCGGGGAGACCTACAGACGGATCCAGGAGGAGC CATGCACACCGGGGAGACCTGCAGACGGATCCAGGAGGAGC Direct Gain 0 0.954332897270013 NA NA prediction 0.908665794540027 Functional Gain - MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48596386 chr17:48596386 nonsynonymous SNV 0.887 4 21 hm7G_associated_SNPs_39477 0 0 0 0 2 MYCBPAP chr17:48596335 3'AG 48596335 Downstream 52bp 36351 chr17 48596386 48596386 1 + A G GBM 48596386 + 48596366 48596406 41 CATGCACACCGGGGAGACCTACAGACGGATCCAGGAGGAGC CATGCACACCGGGGAGACCTGCAGACGGATCCAGGAGGAGC Direct Gain 0 0.954332897270013 NA NA prediction 0.908665794540027 Functional Gain - MYCBPAP ENSG00000136449 CDS Human protein_coding chr17:48596386 chr17:48596386 nonsynonymous SNV 0.887 4 21 hm7G_associated_SNPs_39477 0 0 0 0 2 MYCBPAP chr17:48596450 5'GT 48596450 Upstream 65bp 36352 chr17 15644548 15644548 1 + C G rs538344037 15644548 + 15644528 15644568 41 GCTCGCTGGTGAGAGGCACTCCCTGTGGGTAGGTGGACAGC GCTCGCTGGTGAGAGGCACTGCCTGTGGGTAGGTGGACAGC Direct Gain 0 0.954326842616555 NA NA prediction 0.90865368523311 Functional Gain - TBC1D26 ENSG00000214946 CDS Human protein_coding chr17:15644548 chr17:15644548 nonsynonymous SNV 0.006 2 21 hm7G_associated_SNPs_39478 0 0 0 0 1 TBC1D26 chr17:15644555 5'GT 15644555 Upstream 8bp 36353 chr7 129847851 129847851 1 + C G LUSC 129847851 + 129847831 129847871 41 TGAATGCTGGAAGGATGACTCTTGTGGAACCATAGGGAGCT TGAATGCTGGAAGGATGACTGTTGTGGAACCATAGGGAGCT Direct Gain 0 0.95419174401155 NA NA prediction 0.9083834880231 Functional Gain - SSMEM1 ENSG00000165120 CDS Human protein_coding chr7:129847851 chr7:129847851 nonsynonymous SNV 0.987 3 21 hm7G_associated_SNPs_39481 0 0 0 0 1 SSMEM1 chr7:129847933 5'GT 129847933 Upstream 83bp 36354 chrX 46951102 46951102 1 + A G STAD 46951102 + 46951082 46951122 41 CGCAGAAGTGTTTACAAGCTAGAAAAGGAAGAACAAATCCC CGCAGAAGTGTTTACAAGCTGGAAAAGGAAGAACAAATCCC Direct Gain 0 0.954177597759601 NA NA prediction 0.908355195519202 Functional Gain - RGN ENSG00000130988 CDS Human protein_coding chrX:46951102 chrX:46951102 synonymous SNV . 0 21 hm7G_associated_SNPs_39482 0 0 1 0 1 RGN chrX:46951077 3'AG 46951077 Downstream 26bp 36355 chr14 21499221 21499221 1 + A G LUSC 21499221 + 21499201 21499241 41 ACAGTTCAAAGAGGCAGTGAAGGAACTGGGCCAGAAGCGCT ACAGTTCAAAGAGGCAGTGAGGGAACTGGGCCAGAAGCGCT Direct Gain 0 0.954171908219828 NA NA prediction 0.908343816439655 Functional Gain - TPPP2 ENSG00000179636 CDS Human protein_coding chr14:21499221 chr14:21499221 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_39484 0 0 0 0 1 TPPP2 chr14:21499171 3'AG 21499171 Downstream 51bp 36356 chr5 128442721 128442721 1 + C G LUSC 128442721 + 128442701 128442741 41 TGTTGCTGATGCCACCTCATCAAGAAGCATGATGGACAGGA TGTTGCTGATGCCACCTCATGAAGAAGCATGATGGACAGGA Direct Gain 0 0.954150881977379 NA NA prediction 0.908301763954757 Functional Gain - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128442721 chr5:128442721 stopgain 0.928 1 21 hm7G_associated_SNPs_39486 0 0 1 0 2 ISOC1 chr5:128442639 3'AG 128442639 Downstream 83bp 36357 chr5 128442721 128442721 1 + C G LUSC 128442721 + 128442701 128442741 41 TGTTGCTGATGCCACCTCATCAAGAAGCATGATGGACAGGA TGTTGCTGATGCCACCTCATGAAGAAGCATGATGGACAGGA Direct Gain 0 0.954150881977379 NA NA prediction 0.908301763954757 Functional Gain - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128442721 chr5:128442721 stopgain 0.928 1 21 hm7G_associated_SNPs_39486 0 0 1 0 2 ISOC1 chr5:128442755 5'GT 128442755 Upstream 35bp 36358 chr8 145066886 145066886 1 + A G rs13277282 145066886 + 145066866 145066906 41 GCAGTGGACACCCAGCTGCTACTGGGGAACAAGCAGCTGTC GCAGTGGACACCCAGCTGCTGCTGGGGAACAAGCAGCTGTC Direct Gain 0 0.954150556628109 NA NA prediction 0.908301113256218 Functional Gain - GRINA ENSG00000178719 CDS Human protein_coding chr8:145066886 chr8:145066886 synonymous SNV . 0 21 hm7G_associated_SNPs_39487 0 0 1 0 1 GRINA chr8:145066860 3'AG 145066860 Downstream 27bp 36359 chr14 75471518 75471518 1 + C G GBM 75471518 + 75471498 75471538 41 GATCATGACCATTGGCTTCTCCCGAACAGTAGAGGCCTTCC GATCATGACCATTGGCTTCTGCCGAACAGTAGAGGCCTTCC Direct Gain 0 0.954144791676291 NA NA prediction 0.908289583352582 Functional Gain - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75471518 chr14:75471518 nonsynonymous SNV 0.982 5 21 hm7G_associated_SNPs_39488 0 0 1 0 2 EIF2B2 chr14:75471440 3'AG 75471440 Downstream 79bp 36360 chr14 75471518 75471518 1 + C G GBM 75471518 + 75471498 75471538 41 GATCATGACCATTGGCTTCTCCCGAACAGTAGAGGCCTTCC GATCATGACCATTGGCTTCTGCCGAACAGTAGAGGCCTTCC Direct Gain 0 0.954144791676291 NA NA prediction 0.908289583352582 Functional Gain - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75471518 chr14:75471518 nonsynonymous SNV 0.982 5 21 hm7G_associated_SNPs_39488 0 0 1 0 2 EIF2B2 chr14:75471603 5'GT 75471603 Upstream 86bp 36361 chr20 30070112 30070112 1 + C G BRCA 30070112 + 30070092 30070132 41 TAAAAGCTGGAGCCAGGAGTCATGCCTGCAGGGGGGCAGTG TAAAAGCTGGAGCCAGGAGTGATGCCTGCAGGGGGGCAGTG Direct Gain 0 0.954093858343392 NA NA prediction 0.908187716686784 Functional Gain - REM1 ENSG00000088320 CDS Human protein_coding chr20:30070112 chr20:30070112 stopgain 0.707 0 21 hm7G_associated_SNPs_39490 0 0 0 0 1 REM1 chr20:30070090 3'AG 30070090 Downstream 23bp 36362 chr17 48153093 48153093 1 + C G rs200996148 48153093 + 48153073 48153113 41 TGCCAGAAGCTGGAGCTGCTCCTGATGGTGAGGGAGGAGCA TGCCAGAAGCTGGAGCTGCTGCTGATGGTGAGGGAGGAGCA Direct Gain 0 0.953976752542164 NA NA prediction 0.907953505084328 Functional Gain - ITGA3 ENSG00000005884 CDS Human protein_coding chr17:48153093 chr17:48153093 synonymous SNV . 0 21 hm7G_associated_SNPs_39492 0 0 0 0 1 ITGA3 chr17:48153099 5'GT 48153099 Upstream 7bp 36363 chr11 89421831 89421831 1 + A G rs190074134 89421831 + 89421811 89421851 41 CTTCAGGCAGAGCACGGTATACTAAAAATTGGGTAAGTGAA CTTCAGGCAGAGCACGGTATGCTAAAAATTGGGTAAGTGAA Direct Gain 0 0.95397264516031 NA NA prediction 0.90794529032062 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89421831 chr11:89421831 . . 0 21 hm7G_associated_SNPs_39493 0 0 0 0 2 FOLH1B chr11:89421752 3'AG 89421752 Downstream 80bp 36364 chr11 89421831 89421831 1 + A G rs190074134 89421831 + 89421811 89421851 41 CTTCAGGCAGAGCACGGTATACTAAAAATTGGGTAAGTGAA CTTCAGGCAGAGCACGGTATGCTAAAAATTGGGTAAGTGAA Direct Gain 0 0.95397264516031 NA NA prediction 0.90794529032062 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89421831 chr11:89421831 . . 0 21 hm7G_associated_SNPs_39493 0 0 0 0 2 FOLH1B chr11:89421842 5'GT 89421842 Upstream 12bp 36365 chr2 27121400 27121400 1 + C G OV 27121400 + 27121380 27121420 41 TCAGCCAGCGTGAGGATCCTCATCAAGGGAGGCAAGGTGGT TCAGCCAGCGTGAGGATCCTGATCAAGGGAGGCAAGGTGGT Direct Gain 0 0.953927607954353 NA NA prediction 0.907855215908705 Functional Gain - DPYSL5 ENSG00000157851 CDS Human protein_coding chr2:27121400 chr2:27121400 synonymous SNV . 0 21 hm7G_associated_SNPs_39495 0 0 1 0 1 DPYSL5 chr2:27121364 3'AG 27121364 Downstream 37bp 36366 chr22 38073038 38073038 1 + C G CESC 38073038 + 38073018 38073058 41 TCAAACCTGGAGAGTGCCTTCGAGTGCGAGGCGAGGTGGCT TCAAACCTGGAGAGTGCCTTGGAGTGCGAGGCGAGGTGGCT Direct Gain 0 0.953901635203104 NA NA prediction 0.907803270406207 Functional Gain - LGALS1 ENSG00000100097 CDS Human protein_coding chr22:38073038 chr22:38073038 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_39496 0 0 1 0 1 LGALS1 chr22:38073072 5'GT 38073072 Upstream 35bp 36367 chr17 4391153 4391153 1 + A G rs333122 4391153 + 4391133 4391173 41 GACCTGGAGAGACAAGGCCTACTTTCGGGCGCTGGCGCCTC GACCTGGAGAGACAAGGCCTGCTTTCGGGCGCTGGCGCCTC Direct Gain 0 0.953876343636684 NA NA prediction 0.907752687273369 Functional Gain - SPNS3 ENSG00000182557 CDS Human protein_coding chr17:4391153 chr17:4391153 synonymous SNV . 0 21 hm7G_associated_SNPs_39497 0 0 0 0 1 SPNS3 chr17:4391101 3'AG 4391101 Downstream 53bp 36368 chr16 67200487 67200487 1 + T G LUSC 67200487 + 67200467 67200507 41 CAGTGTCTCTTTGGGCCACTTCAGGCGGGGCCGAGCAATGC CAGTGTCTCTTTGGGCCACTGCAGGCGGGGCCGAGCAATGC Direct Gain 0 0.953819391386294 NA NA prediction 0.907638782772588 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67200487 chr16:67200487 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_39499 0 0 1 0 2 HSF4 chr16:67200461 3'AG 67200461 Downstream 27bp 36369 chr16 67200487 67200487 1 + T G LUSC 67200487 + 67200467 67200507 41 CAGTGTCTCTTTGGGCCACTTCAGGCGGGGCCGAGCAATGC CAGTGTCTCTTTGGGCCACTGCAGGCGGGGCCGAGCAATGC Direct Gain 0 0.953819391386294 NA NA prediction 0.907638782772588 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67200487 chr16:67200487 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_39499 0 0 1 0 2 HSF4 chr16:67200525 5'GT 67200525 Upstream 39bp 36370 chr3 48436064 48436064 1 + A G UCEC 48436064 + 48436044 48436084 41 TGTGATAATGCAAGCATAGTACTTAGGGTGAGGAAAGTAAG TGTGATAATGCAAGCATAGTGCTTAGGGTGAGGAAAGTAAG Direct Gain 0 0.953772467315187 NA NA prediction 0.907544934630374 Functional Gain - FBXW12 ENSG00000164049 CDS Human protein_coding chr3:48436064 chr3:48436064 synonymous SNV . 0 21 hm7G_associated_SNPs_39501 0 0 0 0 1 FBXW12 chr3:48436025 3'AG 48436025 Downstream 40bp 36371 chr3 129023437 129023437 1 + C G BLCA 129023437 + 129023417 129023457 41 TCCTCTTTCTTGTAGGAGCTCAGGGCAAGTGGCAGTAGCCA TCCTCTTTCTTGTAGGAGCTGAGGGCAAGTGGCAGTAGCCA Direct Gain 0 0.953735692150977 NA NA prediction 0.907471384301954 Functional Gain - HMCES ENSG00000183624 CDS Human protein_coding chr3:129023437 chr3:129023437 synonymous SNV . 0 21 hm7G_associated_SNPs_39502 0 0 0 0 1 HMCES chr3:129023432 3'AG 129023432 Downstream 6bp 36372 chr4 88986924 88986924 1 + A G COAD 88986924 + 88986904 88986944 41 CTAATTTCAGGAAGGGCCATACTGATGCAGAGATTGAGGCA CTAATTTCAGGAAGGGCCATGCTGATGCAGAGATTGAGGCA Direct Gain 0 0.953728714155535 NA NA prediction 0.907457428311069 Functional Gain - PKD2 ENSG00000118762 CDS Human protein_coding chr4:88986924 chr4:88986924 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_39504 0 0 0 0 1 PKD2 chr4:88986914 3'AG 88986914 Downstream 11bp 36373 chr3 157160214 157160214 1 + C G HNSC 157160214 + 157160194 157160234 41 AGATTTTTGGAAGCGTGCATCCAGTGAGACCAATGAGGCTT AGATTTTTGGAAGCGTGCATGCAGTGAGACCAATGAGGCTT Direct Gain 0 0.953691228615338 NA NA prediction 0.907382457230676 Functional Gain - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157160214 chr3:157160214 nonsynonymous SNV 0.979 4 21 hm7G_associated_SNPs_39505 0 0 0 0 1 PTX3 chr3:157160155 3'AG 157160155 Downstream 60bp 36374 chr4 166259061 166259061 1 + C G rs188890480 166259061 + 166259041 166259081 41 TTACAGAGTATTTCAATATTCCTTATGATTGGGAAAGAATG TTACAGAGTATTTCAATATTGCTTATGATTGGGAAAGAATG Direct Gain 0 0.953637533071076 NA NA prediction 0.907275066142152 Functional Gain - MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166259061 chr4:166259061 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39506 0 0 1 0 1 MSMO1 chr4:166259089 5'GT 166259089 Upstream 29bp 36375 chr3 39431918 39431918 1 + A G rs34127778 39431918 + 39431898 39431938 41 TTTTGTCTGCTTTCAGGTCTAGACGTGTTGGGATGTTGGCT TTTTGTCTGCTTTCAGGTCTGGACGTGTTGGGATGTTGGCT Direct Gain 0 0.953572203365567 NA NA prediction 0.907144406731135 Functional Gain - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431918 chr3:39431918 nonsynonymous SNV 0.610 0 21 hm7G_associated_SNPs_39509 1 0 0 0 2 SLC25A38 chr3:39431914 3'AG 39431914 Downstream 5bp 36376 chr3 39431918 39431918 1 + A G rs34127778 39431918 + 39431898 39431938 41 TTTTGTCTGCTTTCAGGTCTAGACGTGTTGGGATGTTGGCT TTTTGTCTGCTTTCAGGTCTGGACGTGTTGGGATGTTGGCT Direct Gain 0 0.953572203365567 NA NA prediction 0.907144406731135 Functional Gain - SLC25A38 ENSG00000144659 CDS Human protein_coding chr3:39431918 chr3:39431918 nonsynonymous SNV 0.610 0 21 hm7G_associated_SNPs_39509 1 0 0 0 2 SLC25A38 chr3:39431998 5'GT 39431998 Upstream 81bp 36377 chr1 4834552 4834552 1 + C G LUSC 4834552 + 4834532 4834572 41 TGAGAAATGGTTTGAAATCTCCTGCTGACTGGCCGAAGTCT TGAGAAATGGTTTGAAATCTGCTGCTGACTGGCCGAAGTCT Direct Gain 0 0.953556919137822 NA NA prediction 0.907113838275644 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4834552 chr1:4834552 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_39510 0 0 0 0 2 AJAP1 chr1:4834487 3'AG 4834487 Downstream 66bp 36378 chr1 4834552 4834552 1 + C G LUSC 4834552 + 4834532 4834572 41 TGAGAAATGGTTTGAAATCTCCTGCTGACTGGCCGAAGTCT TGAGAAATGGTTTGAAATCTGCTGCTGACTGGCCGAAGTCT Direct Gain 0 0.953556919137822 NA NA prediction 0.907113838275644 Functional Gain - AJAP1 ENSG00000196581 CDS Human protein_coding chr1:4834552 chr1:4834552 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_39510 0 0 0 0 2 AJAP1 chr1:4834618 5'GT 4834618 Upstream 67bp 36379 chrX 123034434 123034434 1 + T G COAD 123034434 + 123034414 123034454 41 AAAATAATGGAGGAAAAAATTCAGATATCTGGGAGCAACTA AAAATAATGGAGGAAAAAATGCAGATATCTGGGAGCAACTA Direct Gain 0 0.953543164933897 NA NA prediction 0.907086329867793 Functional Gain - XIAP ENSG00000101966 CDS Human protein_coding chrX:123034434 chrX:123034434 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_39511 0 0 1 0 1 XIAP chrX:123034343 3'AG 123034343 Downstream 92bp 36380 chr3 147130317 147130317 1 + T G LUSC 147130317 + 147130297 147130337 41 GGCACCAGGGGAGAAGCCCTTCAAGTGCGAGTTTGAGGGCT GGCACCAGGGGAGAAGCCCTGCAAGTGCGAGTTTGAGGGCT Direct Gain 0 0.953521970273211 NA NA prediction 0.907043940546422 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130317 chr3:147130317 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39512 0 0 0 0 1 ZIC1 chr3:147130305 3'AG 147130305 Downstream 13bp 36381 chr3 129694836 129694836 1 + C G CESC 129694836 + 129694816 129694856 41 CTCTTCCTCCGGGAAAACATCCAGCGGCTGCAAGGGGACCA CTCTTCCTCCGGGAAAACATGCAGCGGCTGCAAGGGGACCA Direct Gain 0 0.953319751407079 NA NA prediction 0.906639502814159 Functional Gain - TRH ENSG00000170893 CDS Human protein_coding chr3:129694836 chr3:129694836 nonsynonymous SNV 0.195 2 21 hm7G_associated_SNPs_39513 0 0 0 0 1 TRH chr3:129694870 5'GT 129694870 Upstream 35bp 36382 chr1 155108417 155108417 1 + C G SKCM 155108417 + 155108397 155108437 41 GGCGGCTTTCTGGACTCGCTCATTTACGGAGCATGCGTGGT GGCGGCTTTCTGGACTCGCTGATTTACGGAGCATGCGTGGT Direct Gain 0 0.953185301723554 NA NA prediction 0.906370603447109 Functional Gain - SLC50A1 ENSG00000169241 CDS Human protein_coding chr1:155108417 chr1:155108417 synonymous SNV . 0 21 hm7G_associated_SNPs_39515 0 0 1 0 1 SLC50A1 chr1:155108467 5'GT 155108467 Upstream 51bp 36383 chrX 72674262 72674262 1 + C G ACC 72674262 + 72674242 72674282 41 GCCAAGGAGAGAAAGATGATCAAAAAGAAAATCTCCCAGTT GCCAAGGAGAGAAAGATGATGAAAAAGAAAATCTCCCAGTT Direct Gain 0 0.95315545755671 NA NA prediction 0.90631091511342 Functional Gain - CDX4 ENSG00000131264 CDS Human protein_coding chrX:72674262 chrX:72674262 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_39516 0 0 0 0 1 CDX4 chrX:72674215 3'AG 72674215 Downstream 48bp 36384 chr4 17621584 17621584 1 + C G BLCA 17621584 + 17621564 17621604 41 GCACCGATCAGGAAGAAATTCGAACCGGTAAGCATTCCCTC GCACCGATCAGGAAGAAATTGGAACCGGTAAGCATTCCCTC Direct Gain 0 0.953154980651291 NA NA prediction 0.906309961302582 Functional Gain - MED28 ENSG00000118579 CDS Human protein_coding chr4:17621584 chr4:17621584 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_39517 0 0 1 0 2 MED28 chr4:17621524 3'AG 17621524 Downstream 61bp 36385 chr4 17621584 17621584 1 + C G BLCA 17621584 + 17621564 17621604 41 GCACCGATCAGGAAGAAATTCGAACCGGTAAGCATTCCCTC GCACCGATCAGGAAGAAATTGGAACCGGTAAGCATTCCCTC Direct Gain 0 0.953154980651291 NA NA prediction 0.906309961302582 Functional Gain - MED28 ENSG00000118579 CDS Human protein_coding chr4:17621584 chr4:17621584 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_39517 0 0 1 0 2 MED28 chr4:17621590 5'GT 17621590 Upstream 7bp 36386 chr19 30104854 30104854 1 + T G UCEC 30104854 + 30104834 30104874 41 ACAAAGCACATTTTCAAAATTATCACCAAAGAAGACCGCCT ACAAAGCACATTTTCAAAATGATCACCAAAGAAGACCGCCT Direct Gain 0 0.95311464493989 NA NA prediction 0.90622928987978 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30104854 chr19:30104854 nonsynonymous SNV 0.977 3 21 hm7G_associated_SNPs_39519 0 0 1 0 2 POP4 chr19:30104778 3'AG 30104778 Downstream 77bp 36387 chr19 30104854 30104854 1 + T G UCEC 30104854 + 30104834 30104874 41 ACAAAGCACATTTTCAAAATTATCACCAAAGAAGACCGCCT ACAAAGCACATTTTCAAAATGATCACCAAAGAAGACCGCCT Direct Gain 0 0.95311464493989 NA NA prediction 0.90622928987978 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30104854 chr19:30104854 nonsynonymous SNV 0.977 3 21 hm7G_associated_SNPs_39519 0 0 1 0 2 POP4 chr19:30104879 5'GT 30104879 Upstream 26bp 36388 chr16 67262721 67262721 1 + A G SKCM 67262721 + 67262701 67262741 41 CACCTTAAGGATGTGATCCTACTGACAGCCATCGTGCAGGT CACCTTAAGGATGTGATCCTGCTGACAGCCATCGTGCAGGT Direct Gain 0 0.953045719481996 NA NA prediction 0.906091438963991 Functional Gain - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262721 chr16:67262721 synonymous SNV . 0 21 hm7G_associated_SNPs_39521 0 0 1 0 2 TMEM208 chr16:67262700 3'AG 67262700 Downstream 22bp 36389 chr16 67262721 67262721 1 + A G SKCM 67262721 + 67262701 67262741 41 CACCTTAAGGATGTGATCCTACTGACAGCCATCGTGCAGGT CACCTTAAGGATGTGATCCTGCTGACAGCCATCGTGCAGGT Direct Gain 0 0.953045719481996 NA NA prediction 0.906091438963991 Functional Gain - TMEM208 ENSG00000168701 CDS Human protein_coding chr16:67262721 chr16:67262721 synonymous SNV . 0 21 hm7G_associated_SNPs_39521 0 0 1 0 2 TMEM208 chr16:67262784 5'GT 67262784 Upstream 64bp 36390 chr13 28498444 28498444 1 + A G UCEC 28498444 + 28498424 28498464 41 CAAGCGGACGCGCACGGCCTACACGCGCGCACAGCTGCTAG CAAGCGGACGCGCACGGCCTGCACGCGCGCACAGCTGCTAG Direct Gain 0 0.952900030813546 NA NA prediction 0.905800061627092 Functional Gain - PDX1 ENSG00000139515 CDS Human protein_coding chr13:28498444 chr13:28498444 nonsynonymous SNV 0.995 5 21 hm7G_associated_SNPs_39522 0 0 0 0 1 PDX1 chr13:28498393 3'AG 28498393 Downstream 52bp 36391 chr4 76725349 76725349 1 + C G HNSC 76725349 + 76725329 76725369 41 AAATGTCAAAATGAACAGCTCCAGACGGCAGTCACACAGCA AAATGTCAAAATGAACAGCTGCAGACGGCAGTCACACAGCA Direct Gain 0 0.952778916041185 NA NA prediction 0.905557832082371 Functional Gain - USO1 ENSG00000138768 CDS Human protein_coding chr4:76725349 chr4:76725349 synonymous SNV . 0 21 hm7G_associated_SNPs_39527 0 0 1 0 2 USO1 chr4:76725287 3'AG 76725287 Downstream 63bp 36392 chr4 76725349 76725349 1 + C G HNSC 76725349 + 76725329 76725369 41 AAATGTCAAAATGAACAGCTCCAGACGGCAGTCACACAGCA AAATGTCAAAATGAACAGCTGCAGACGGCAGTCACACAGCA Direct Gain 0 0.952778916041185 NA NA prediction 0.905557832082371 Functional Gain - USO1 ENSG00000138768 CDS Human protein_coding chr4:76725349 chr4:76725349 synonymous SNV . 0 21 hm7G_associated_SNPs_39527 0 0 1 0 2 USO1 chr4:76725425 5'GT 76725425 Upstream 77bp 36393 chr12 49312243 49312243 1 + A G UCEC 49312243 + 49312223 49312263 41 GAAGTACAGATGAAAAAAATACAGAAACTACAGGTTAGTGT GAAGTACAGATGAAAAAAATGCAGAAACTACAGGTTAGTGT Direct Gain 0 0.952774165210299 NA NA prediction 0.905548330420597 Functional Gain - CCDC65 ENSG00000139537 CDS Human protein_coding chr12:49312243 chr12:49312243 nonsynonymous SNV 0.978 1 21 hm7G_associated_SNPs_39528 0 0 0 0 1 CCDC65 chr12:49312255 5'GT 49312255 Upstream 13bp 36394 chr1 84867669 84867669 1 + A G LUSC 84867669 + 84867649 84867689 41 TGTACCTAGACTCTACAACTAGAAGCTGGAGGAAGAGTGAG TGTACCTAGACTCTACAACTGGAAGCTGGAGGAAGAGTGAG Direct Gain 0 0.952765423436368 NA NA prediction 0.905530846872736 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84867669 chr1:84867669 nonsynonymous SNV 0.070 0 21 hm7G_associated_SNPs_39529 0 0 0 0 2 DNASE2B chr1:84867584 3'AG 84867584 Downstream 86bp 36395 chr1 84867669 84867669 1 + A G LUSC 84867669 + 84867649 84867689 41 TGTACCTAGACTCTACAACTAGAAGCTGGAGGAAGAGTGAG TGTACCTAGACTCTACAACTGGAAGCTGGAGGAAGAGTGAG Direct Gain 0 0.952765423436368 NA NA prediction 0.905530846872736 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84867669 chr1:84867669 nonsynonymous SNV 0.070 0 21 hm7G_associated_SNPs_39529 0 0 0 0 2 DNASE2B chr1:84867761 5'GT 84867761 Upstream 93bp 36396 chr17 67513674 67513674 1 + A G rs200064105 67513674 + 67513654 67513694 41 AGGCAGATGACCTGGAGCCTATAATGGAACTGGGACGAGGT AGGCAGATGACCTGGAGCCTGTAATGGAACTGGGACGAGGT Direct Gain 0 0.95275735734252 NA NA prediction 0.905514714685041 Functional Gain - MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67513674 chr17:67513674 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_39530 0 0 1 0 2 MAP2K6 chr17:67513641 3'AG 67513641 Downstream 34bp 36397 chr17 67513674 67513674 1 + A G rs200064105 67513674 + 67513654 67513694 41 AGGCAGATGACCTGGAGCCTATAATGGAACTGGGACGAGGT AGGCAGATGACCTGGAGCCTGTAATGGAACTGGGACGAGGT Direct Gain 0 0.95275735734252 NA NA prediction 0.905514714685041 Functional Gain - MAP2K6 ENSG00000108984 CDS Human protein_coding chr17:67513674 chr17:67513674 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_39530 0 0 1 0 2 MAP2K6 chr17:67513754 5'GT 67513754 Upstream 81bp 36398 chr1 113264870 113264870 1 + C G rs148184084 113264870 + 113264850 113264890 41 CGCAGGATGAGTGAGAGGGTCGAGCGGAACTGGAGCACGGG CGCAGGATGAGTGAGAGGGTGGAGCGGAACTGGAGCACGGG Direct Gain 0 0.952753998487764 NA NA prediction 0.905507996975528 Functional Gain - FAM19A3 ENSG00000184599 CDS Human protein_coding chr1:113264870 chr1:113264870 synonymous SNV . 0 21 hm7G_associated_SNPs_39531 0 0 0 0 1 FAM19A3 chr1:113264855 3'AG 113264855 Downstream 16bp 36399 chr14 62244847 62244847 1 + C G BLCA 62244847 + 62244827 62244867 41 AAAAAATGGAAGGAAATTCACAAGAAACGGAGGTCAGAAAA AAAAAATGGAAGGAAATTCAGAAGAAACGGAGGTCAGAAAA Direct Gain 0 0.952748417698796 NA NA prediction 0.905496835397593 Functional Gain - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62244847 chr14:62244847 nonsynonymous SNV 0.210 0 21 hm7G_associated_SNPs_39532 0 0 1 0 2 SNAPC1 chr14:62244790 3'AG 62244790 Downstream 58bp 36400 chr14 62244847 62244847 1 + C G BLCA 62244847 + 62244827 62244867 41 AAAAAATGGAAGGAAATTCACAAGAAACGGAGGTCAGAAAA AAAAAATGGAAGGAAATTCAGAAGAAACGGAGGTCAGAAAA Direct Gain 0 0.952748417698796 NA NA prediction 0.905496835397593 Functional Gain - SNAPC1 ENSG00000023608 CDS Human protein_coding chr14:62244847 chr14:62244847 nonsynonymous SNV 0.210 0 21 hm7G_associated_SNPs_39532 0 0 1 0 2 SNAPC1 chr14:62244858 5'GT 62244858 Upstream 12bp 36401 chr1 217915369 217915369 1 + A G UCEC 217915369 + 217915349 217915389 41 AAAGAGAAGAGAAGAAGGCTAACCTCGAAAGGGAAGAGAAG AAAGAGAAGAGAAGAAGGCTGACCTCGAAAGGGAAGAGAAG Direct Gain 0 0.952704757267727 NA NA prediction 0.905409514535455 Functional Gain - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217915369 chr1:217915369 nonsynonymous SNV 0.723 0 21 hm7G_associated_SNPs_39533 0 0 0 2 2 SPATA17 chr1:217915317 3'AG 217915317 Downstream 53bp 36402 chr1 217915369 217915369 1 + A G UCEC 217915369 + 217915349 217915389 41 AAAGAGAAGAGAAGAAGGCTAACCTCGAAAGGGAAGAGAAG AAAGAGAAGAGAAGAAGGCTGACCTCGAAAGGGAAGAGAAG Direct Gain 0 0.952704757267727 NA NA prediction 0.905409514535455 Functional Gain - SPATA17 ENSG00000162814 CDS Human protein_coding chr1:217915369 chr1:217915369 nonsynonymous SNV 0.723 0 21 hm7G_associated_SNPs_39533 0 0 0 2 2 SPATA17 chr1:217915440 5'GT 217915440 Upstream 72bp 36403 chr3 101293097 101293097 1 + A G rs116752753 101293097 + 101293077 101293117 41 GGGAGACGAGAAGCCTGAAAAGTCGCAGCGAGCTGGAGCCG GGGAGACGAGAAGCCTGAAAGGTCGCAGCGAGCTGGAGCCG Direct Gain 0 0.952655064900488 NA NA prediction 0.905310129800976 Functional Gain - PCNP ENSG00000081154 CDS Human protein_coding chr3:101293097 chr3:101293097 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_39535 0 0 1 0 1 PCNP chr3:101293123 5'GT 101293123 Upstream 27bp 36404 chr1 37945948 37945948 1 + T G COAD 37945948 + 37945928 37945968 41 CTGCTGGCAGTGAACTGGTTTCTGGAGCGGGGCCACACAGA CTGCTGGCAGTGAACTGGTTGCTGGAGCGGGGCCACACAGA Direct Gain 0 0.952625026999521 NA NA prediction 0.905250053999042 Functional Gain - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37945948 chr1:37945948 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39536 0 0 0 0 2 ZC3H12A chr1:37945891 3'AG 37945891 Downstream 58bp 36405 chr1 37945948 37945948 1 + T G COAD 37945948 + 37945928 37945968 41 CTGCTGGCAGTGAACTGGTTTCTGGAGCGGGGCCACACAGA CTGCTGGCAGTGAACTGGTTGCTGGAGCGGGGCCACACAGA Direct Gain 0 0.952625026999521 NA NA prediction 0.905250053999042 Functional Gain - ZC3H12A ENSG00000163874 CDS Human protein_coding chr1:37945948 chr1:37945948 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39536 0 0 0 0 2 ZC3H12A chr1:37946030 5'GT 37946030 Upstream 83bp 36406 chr20 33147630 33147630 1 + C G BLCA 33147630 + 33147610 33147650 41 TCCACGCCCATCGCGGACATCTACGAGCAGGAGAAAGACGA TCCACGCCCATCGCGGACATGTACGAGCAGGAGAAAGACGA Direct Gain 0 0.952616028912819 NA NA prediction 0.905232057825637 Functional Gain - MAP1LC3A ENSG00000101460 CDS Human protein_coding chr20:33147630 chr20:33147630 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39537 0 0 0 0 1 MAP1LC3A chr20:33147540 3'AG 33147540 Downstream 91bp 36407 chr12 72167762 72167762 1 + A G UCEC 72167762 + 72167742 72167782 41 AAAAACTGGGTCAAAGAATTACGGAAAATGTTGGGAAATGA AAAAACTGGGTCAAAGAATTGCGGAAAATGTTGGGAAATGA Direct Gain 0 0.952607120836851 NA NA prediction 0.905214241673701 Functional Gain - RAB21 ENSG00000080371 CDS Human protein_coding chr12:72167762 chr12:72167762 synonymous SNV . 0 21 hm7G_associated_SNPs_39538 0 0 1 0 2 RAB21 chr12:72167739 3'AG 72167739 Downstream 24bp 36408 chr12 72167762 72167762 1 + A G UCEC 72167762 + 72167742 72167782 41 AAAAACTGGGTCAAAGAATTACGGAAAATGTTGGGAAATGA AAAAACTGGGTCAAAGAATTGCGGAAAATGTTGGGAAATGA Direct Gain 0 0.952607120836851 NA NA prediction 0.905214241673701 Functional Gain - RAB21 ENSG00000080371 CDS Human protein_coding chr12:72167762 chr12:72167762 synonymous SNV . 0 21 hm7G_associated_SNPs_39538 0 0 1 0 2 RAB21 chr12:72167802 5'GT 72167802 Upstream 41bp 36409 chr20 42320836 42320836 1 + C G CESC 42320836 + 42320816 42320856 41 AATCACTGGAACTCTACCATCAAAAGGAAGGTGGACACAGG AATCACTGGAACTCTACCATGAAAAGGAAGGTGGACACAGG Direct Gain 0 0.952525991709522 NA NA prediction 0.905051983419044 Functional Gain - MYBL2 ENSG00000101057 CDS Human protein_coding chr20:42320836 chr20:42320836 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39541 0 0 1 0 1 MYBL2 chr20:42320797 3'AG 42320797 Downstream 40bp 36410 chr1 109167328 109167328 1 + A G HNSC 109167328 + 109167308 109167348 41 CTGAATCTTTGCAAGAAGATAGAAAAGGTGGAGAGACTCTC CTGAATCTTTGCAAGAAGATGGAAAAGGTGGAGAGACTCTC Direct Gain 0 0.952503366650344 NA NA prediction 0.905006733300688 Functional Gain - FAM102B ENSG00000162636 CDS Human protein_coding chr1:109167328 chr1:109167328 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39542 0 0 0 0 2 FAM102B chr1:109167267 3'AG 109167267 Downstream 62bp 36411 chr1 109167328 109167328 1 + A G HNSC 109167328 + 109167308 109167348 41 CTGAATCTTTGCAAGAAGATAGAAAAGGTGGAGAGACTCTC CTGAATCTTTGCAAGAAGATGGAAAAGGTGGAGAGACTCTC Direct Gain 0 0.952503366650344 NA NA prediction 0.905006733300688 Functional Gain - FAM102B ENSG00000162636 CDS Human protein_coding chr1:109167328 chr1:109167328 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39542 0 0 0 0 2 FAM102B chr1:109167370 5'GT 109167370 Upstream 43bp 36412 chr2 228221725 228221725 1 + A G rs4844 228221725 + 228221705 228221745 41 ATCAAACTAAATAGACGTCTACAACTTCTGGAAGAGGAGAA ATCAAACTAAATAGACGTCTGCAACTTCTGGAAGAGGAGAA Direct Gain 0 0.952463487780113 NA NA prediction 0.904926975560226 Functional Gain - MFF ENSG00000168958 CDS Human protein_coding chr2:228221725 chr2:228221725 synonymous SNV . 0 21 hm7G_associated_SNPs_39543 1 0 1 0 1 MFF chr2:228221702 3'AG 228221702 Downstream 24bp 36413 chr19 35758631 35758631 1 + C G BLCA 35758631 + 35758611 35758651 41 GCGTCCCGAGAGCGCAGGCTCAAGAAGGTGAGGGCCGCCCT GCGTCCCGAGAGCGCAGGCTGAAGAAGGTGAGGGCCGCCCT Direct Gain 0 0.952445416215659 NA NA prediction 0.904890832431319 Functional Gain - LSR ENSG00000105699 CDS Human protein_coding chr19:35758631 chr19:35758631 synonymous SNV . 0 21 hm7G_associated_SNPs_39544 0 0 1 0 1 LSR chr19:35758637 5'GT 35758637 Upstream 7bp 36414 chr19 50001234 50001234 1 + A G STAD 50001234 + 50001214 50001254 41 CCGCCGAGACTATCTGCACTACATCCGCAAGTACAACCGCT CCGCCGAGACTATCTGCACTGCATCCGCAAGTACAACCGCT Direct Gain 0 0.9523832503889 NA NA prediction 0.904766500777801 Functional Gain - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001234 chr19:50001234 nonsynonymous SNV 0.983 4 21 hm7G_associated_SNPs_39548 0 0 1 0 2 RPS11 chr19:50001174 3'AG 50001174 Downstream 61bp 36415 chr19 50001234 50001234 1 + A G STAD 50001234 + 50001214 50001254 41 CCGCCGAGACTATCTGCACTACATCCGCAAGTACAACCGCT CCGCCGAGACTATCTGCACTGCATCCGCAAGTACAACCGCT Direct Gain 0 0.9523832503889 NA NA prediction 0.904766500777801 Functional Gain - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50001234 chr19:50001234 nonsynonymous SNV 0.983 4 21 hm7G_associated_SNPs_39548 0 0 1 0 2 RPS11 chr19:50001303 5'GT 50001303 Upstream 70bp 36416 chr12 102122750 102122750 1 - T C rs190337934 102122750 - 102122730 102122770 41 TCCATGAAACAGCAGCAGCAAGAGATAGCAAGTGTTCGGAA TCCATGAAACAGCAGCAGCAGGAGATAGCAAGTGTTCGGAA Direct Gain 0 0.952344597881589 NA NA prediction 0.904689195763178 Functional Gain - SYCP3 ENSG00000139351 CDS Human protein_coding chr12:102122750 chr12:102122750 synonymous SNV . 0 21 hm7G_associated_SNPs_39549 1 0 0 0 1 SYCP3 chr12:102122758 3'AG 102122758 Downstream 9bp 36417 chr5 134343758 134343758 1 + C G STAD 134343758 + 134343738 134343778 41 GCTTCTGCCTGTTTGGATCTCCAGACAATGGTGACCATGAT GCTTCTGCCTGTTTGGATCTGCAGACAATGGTGACCATGAT Direct Gain 0 0.952327760550895 NA NA prediction 0.904655521101789 Functional Gain - CATSPER3 ENSG00000152705 CDS Human protein_coding chr5:134343758 chr5:134343758 nonsynonymous SNV 0.130 1 21 hm7G_associated_SNPs_39550 0 0 1 0 1 CATSPER3 chr5:134343829 5'GT 134343829 Upstream 72bp 36418 chr11 63742235 63742235 1 + C G BLCA 63742235 + 63742215 63742255 41 GCCGCGCGCCAAGATCCATTCGTTGCCGCCGGAGGGGAAGC GCCGCGCGCCAAGATCCATTGGTTGCCGCCGGAGGGGAAGC Direct Gain 0 0.952308231088048 NA NA prediction 0.904616462176096 Functional Gain - COX8A ENSG00000176340;ENSG00000256100 CDS Human other chr11:63742235 chr11:63742235 nonsynonymous SNV 0.165 3 21 hm7G_associated_SNPs_39551 0 0 1 0 1 COX8A chr11:63742266 5'GT 63742266 Upstream 32bp 36419 chr10 64913327 64913327 1 + C G BLCA 64913327 + 64913307 64913347 41 ATGAAACAGCTCCTCCTCATCCAAGAGAGATGGAAAAGGGC ATGAAACAGCTCCTCCTCATGCAAGAGAGATGGAAAAGGGC Direct Gain 0 0.952203419349499 NA NA prediction 0.904406838698998 Functional Gain - NRBF2 ENSG00000148572 CDS Human protein_coding chr10:64913327 chr10:64913327 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39556 0 0 0 0 1 NRBF2 chr10:64913271 3'AG 64913271 Downstream 57bp 36420 chr1 41481832 41481832 1 - G C BLCA 41481832 - 41481812 41481852 41 ATGATGGAGAAGGAGCAGCTCCAGCAGCAGCTGCAGCAGCA ATGATGGAGAAGGAGCAGCTGCAGCAGCAGCTGCAGCAGCA Direct Gain 0 0.952163426106414 NA NA prediction 0.904326852212829 Functional Gain - SLFNL1 ENSG00000171790 CDS Human protein_coding chr1:41481832 chr1:41481832 synonymous SNV . 0 21 hm7G_associated_SNPs_39557 0 0 0 0 1 SLFNL1 chr1:41481900 3'AG 41481900 Downstream 69bp 36421 chr9 33276501 33276501 1 + C G HNSC 33276501 + 33276481 33276521 41 ATGGAAGATGCAAATGAAATCCAAGAAGCACTGAGTCGCAG ATGGAAGATGCAAATGAAATGCAAGAAGCACTGAGTCGCAG Direct Gain 0 0.952155571083011 NA NA prediction 0.904311142166021 Functional Gain - CHMP5 ENSG00000086065 CDS Human protein_coding chr9:33276501 chr9:33276501 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39559 0 0 1 0 2 CHMP5 chr9:33276454 3'AG 33276454 Downstream 48bp 36422 chr9 33276501 33276501 1 + C G HNSC 33276501 + 33276481 33276521 41 ATGGAAGATGCAAATGAAATCCAAGAAGCACTGAGTCGCAG ATGGAAGATGCAAATGAAATGCAAGAAGCACTGAGTCGCAG Direct Gain 0 0.952155571083011 NA NA prediction 0.904311142166021 Functional Gain - CHMP5 ENSG00000086065 CDS Human protein_coding chr9:33276501 chr9:33276501 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39559 0 0 1 0 2 CHMP5 chr9:33276562 5'GT 33276562 Upstream 62bp 36423 chr2 200824482 200824482 1 + A G UCEC 200824482 + 200824462 200824502 41 TTTTTTCAAACTTAGGTGCTACATGCATTGAAAGAAAAGGT TTTTTTCAAACTTAGGTGCTGCATGCATTGAAAGAAAAGGT Direct Gain 0 0.952129916305577 NA NA prediction 0.904259832611154 Functional Gain - MAIP1 ENSG00000162972 CDS Human protein_coding chr2:200824482 chr2:200824482 synonymous SNV . 0 21 hm7G_associated_SNPs_39560 0 0 1 0 1 MAIP1 chr2:200824477 3'AG 200824477 Downstream 6bp 36424 chr22 37268449 37268449 1 + C G BLCA 37268449 + 37268429 37268469 41 ATCTTCCTCCTCAGTCGGATCAACAAAGACTGGCTGGAGGT ATCTTCCTCCTCAGTCGGATGAACAAAGACTGGCTGGAGGT Direct Gain 0 0.952073079058158 NA NA prediction 0.904146158116316 Functional Gain - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37268449 chr22:37268449 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39561 0 0 0 0 2 NCF4 chr22:37268369 3'AG 37268369 Downstream 81bp 36425 chr22 37268449 37268449 1 + C G BLCA 37268449 + 37268429 37268469 41 ATCTTCCTCCTCAGTCGGATCAACAAAGACTGGCTGGAGGT ATCTTCCTCCTCAGTCGGATGAACAAAGACTGGCTGGAGGT Direct Gain 0 0.952073079058158 NA NA prediction 0.904146158116316 Functional Gain - NCF4 ENSG00000100365 CDS Human protein_coding chr22:37268449 chr22:37268449 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39561 0 0 0 0 2 NCF4 chr22:37268467 5'GT 37268467 Upstream 19bp 36426 chr19 46027903 46027903 1 + A G rs374929298 46027903 + 46027883 46027923 41 TCCAGTGATTACTCGGACCTACAGAGGGTGAAACAGGTAAC TCCAGTGATTACTCGGACCTGCAGAGGGTGAAACAGGTAAC Direct Gain 0 0.952058640093623 NA NA prediction 0.904117280187245 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46027903 chr19:46027903 synonymous SNV . 0 21 hm7G_associated_SNPs_39562 0 0 1 0 2 VASP chr19:46027828 3'AG 46027828 Downstream 76bp 36427 chr19 46027903 46027903 1 + A G rs374929298 46027903 + 46027883 46027923 41 TCCAGTGATTACTCGGACCTACAGAGGGTGAAACAGGTAAC TCCAGTGATTACTCGGACCTGCAGAGGGTGAAACAGGTAAC Direct Gain 0 0.952058640093623 NA NA prediction 0.904117280187245 Functional Gain - VASP ENSG00000125753 CDS Human protein_coding chr19:46027903 chr19:46027903 synonymous SNV . 0 21 hm7G_associated_SNPs_39562 0 0 1 0 2 VASP chr19:46027918 5'GT 46027918 Upstream 16bp 36428 chr12 112459972 112459972 1 + A G UCEC 112459972 + 112459952 112459992 41 AGATTATGGTGACAAGCTGAACATGGAGCTGAGTGAGAAAT AGATTATGGTGACAAGCTGAGCATGGAGCTGAGTGAGAAAT Direct Gain 0 0.952030360665746 NA NA prediction 0.904060721331492 Functional Gain - ERP29 ENSG00000089248 CDS Human protein_coding chr12:112459972 chr12:112459972 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39565 0 0 1 0 1 ERP29 chr12:112459954 3'AG 112459954 Downstream 19bp 36429 chr22 31663853 31663853 1 + A G COAD 31663853 + 31663833 31663873 41 GCTGAACCTCCTGACAGAGTACATTGAGGGGGGCACACTGA GCTGAACCTCCTGACAGAGTGCATTGAGGGGGGCACACTGA Direct Gain 0 0.951953193353632 NA NA prediction 0.903906386707265 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31663853 chr22:31663853 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39566 0 0 1 0 2 LIMK2 chr22:31663762 3'AG 31663762 Downstream 92bp 36430 chr22 31663853 31663853 1 + A G COAD 31663853 + 31663833 31663873 41 GCTGAACCTCCTGACAGAGTACATTGAGGGGGGCACACTGA GCTGAACCTCCTGACAGAGTGCATTGAGGGGGGCACACTGA Direct Gain 0 0.951953193353632 NA NA prediction 0.903906386707265 Functional Gain - LIMK2 ENSG00000182541 CDS Human protein_coding chr22:31663853 chr22:31663853 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39566 0 0 1 0 2 LIMK2 chr22:31663893 5'GT 31663893 Upstream 41bp 36431 chr4 146653623 146653623 1 + T G rs74531946 146653623 + 146653603 146653643 41 AGCTTCATGGACGGTGCGATTCTGAAAGCAAGGTTTGCTCA AGCTTCATGGACGGTGCGATGCTGAAAGCAAGGTTTGCTCA Direct Gain 0 0.95189675300083 NA NA prediction 0.90379350600166 Functional Gain - C4orf51 ENSG00000237136 CDS Human protein_coding chr4:146653623 chr4:146653623 nonsynonymous SNV 0.046 0 21 hm7G_associated_SNPs_39568 0 0 0 0 1 C4orf51 chr4:146653605 3'AG 146653605 Downstream 19bp 36432 chr1 26513698 26513698 1 + A G LAML 26513698 + 26513678 26513718 41 TCATCAATGTCTCCAACTATAGTCTGGAAAGTGGACATGAT TCATCAATGTCTCCAACTATGGTCTGGAAAGTGGACATGAT Direct Gain 0 0.951883822281161 NA NA prediction 0.903767644562321 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26513698 chr1:26513698 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_39569 0 0 0 0 2 CNKSR1 chr1:26513659 3'AG 26513659 Downstream 40bp 36433 chr1 26513698 26513698 1 + A G LAML 26513698 + 26513678 26513718 41 TCATCAATGTCTCCAACTATAGTCTGGAAAGTGGACATGAT TCATCAATGTCTCCAACTATGGTCTGGAAAGTGGACATGAT Direct Gain 0 0.951883822281161 NA NA prediction 0.903767644562321 Functional Gain - CNKSR1 ENSG00000142675 CDS Human protein_coding chr1:26513698 chr1:26513698 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_39569 0 0 0 0 2 CNKSR1 chr1:26513732 5'GT 26513732 Upstream 35bp 36434 chr7 75933167 75933167 1 + T G LUSC 75933167 + 75933147 75933187 41 TGGCTACATCTCCCGGTGCTTCACGCGGAAATACACGTGAG TGGCTACATCTCCCGGTGCTGCACGCGGAAATACACGTGAG Direct Gain 0 0.95185064304926 NA NA prediction 0.90370128609852 Functional Gain - HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933167 chr7:75933167 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_39570 0 0 1 0 2 HSPB1 chr7:75933119 3'AG 75933119 Downstream 49bp 36435 chr7 75933167 75933167 1 + T G LUSC 75933167 + 75933147 75933187 41 TGGCTACATCTCCCGGTGCTTCACGCGGAAATACACGTGAG TGGCTACATCTCCCGGTGCTGCACGCGGAAATACACGTGAG Direct Gain 0 0.95185064304926 NA NA prediction 0.90370128609852 Functional Gain - HSPB1 ENSG00000106211 CDS Human protein_coding chr7:75933167 chr7:75933167 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_39570 0 0 1 0 2 HSPB1 chr7:75933182 5'GT 75933182 Upstream 16bp 36436 chr2 162175351 162175351 1 + T G BRCA 162175351 + 162175331 162175371 41 AGAAATATGGACAGACTTCTTAGACTTGGAGGAGGTATGCC AGAAATATGGACAGACTTCTGAGACTTGGAGGAGGTATGCC Direct Gain 0 0.951847423814726 NA NA prediction 0.903694847629452 Functional Gain - PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162175351 chr2:162175351 synonymous SNV . 0 21 hm7G_associated_SNPs_39571 0 0 1 0 2 PSMD14 chr2:162175333 3'AG 162175333 Downstream 19bp 36437 chr2 162175351 162175351 1 + T G BRCA 162175351 + 162175331 162175371 41 AGAAATATGGACAGACTTCTTAGACTTGGAGGAGGTATGCC AGAAATATGGACAGACTTCTGAGACTTGGAGGAGGTATGCC Direct Gain 0 0.951847423814726 NA NA prediction 0.903694847629452 Functional Gain - PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162175351 chr2:162175351 synonymous SNV . 0 21 hm7G_associated_SNPs_39571 0 0 1 0 2 PSMD14 chr2:162175384 5'GT 162175384 Upstream 34bp 36438 chrX 135572294 135572294 1 + A G LUAD 135572294 + 135572274 135572314 41 CTGATTATGTGTTTCTAGATACAAGGCAGTTGTGAAGCCAC CTGATTATGTGTTTCTAGATGCAAGGCAGTTGTGAAGCCAC Direct Gain 0 0.951755713777157 NA NA prediction 0.903511427554313 Functional Gain - BRS3 ENSG00000102239 CDS Human protein_coding chrX:135572294 chrX:135572294 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_39575 0 0 0 0 1 BRS3 chrX:135572292 3'AG 135572292 Downstream 3bp 36439 chr3 13545601 13545601 1 + C G LUAD 13545601 + 13545581 13545621 41 GTCTCTCTCCCAGAGGCCATCAGGCGGAAGGTGGAGCTGGA GTCTCTCTCCCAGAGGCCATGAGGCGGAAGGTGGAGCTGGA Direct Gain 0 0.951664757602528 NA NA prediction 0.903329515205057 Functional Gain - HDAC11 ENSG00000163517 CDS Human protein_coding chr3:13545601 chr3:13545601 stopgain 1.000 3 21 hm7G_associated_SNPs_39577 0 0 0 0 1 HDAC11 chr3:13545594 3'AG 13545594 Downstream 8bp 36440 chr2 73453008 73453008 1 + A G STAD 73453008 + 73452988 73453028 41 ACCTCAGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAAGG ACCTCAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGG Direct Gain 0 0.951578208849705 NA NA prediction 0.90315641769941 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73453008 chr2:73453008 synonymous SNV . 0 21 hm7G_associated_SNPs_39580 0 0 1 0 1 SMYD5 chr2:73452924 3'AG 73452924 Downstream 85bp 36441 chr5 161530936 161530936 1 + A G COAD 161530936 + 161530916 161530956 41 TTGTTTATCAATGGAAGCGAAGTTCTGTTGAAGTGGGCGAC TTGTTTATCAATGGAAGCGAGGTTCTGTTGAAGTGGGCGAC Direct Gain 0 0.951576994625599 NA NA prediction 0.903153989251197 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161530936 chr5:161530936 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39581 0 0 0 0 2 GABRG2 chr5:161530895 3'AG 161530895 Downstream 42bp 36442 chr5 161530936 161530936 1 + A G COAD 161530936 + 161530916 161530956 41 TTGTTTATCAATGGAAGCGAAGTTCTGTTGAAGTGGGCGAC TTGTTTATCAATGGAAGCGAGGTTCTGTTGAAGTGGGCGAC Direct Gain 0 0.951576994625599 NA NA prediction 0.903153989251197 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161530936 chr5:161530936 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39581 0 0 0 0 2 GABRG2 chr5:161531032 5'GT 161531032 Upstream 97bp 36443 chr7 100799894 100799894 1 + T G STAD 100799894 + 100799874 100799914 41 GATGCGGTTCATGCTATTATTCAGCCGGCAGGGAAAACTGC GATGCGGTTCATGCTATTATGCAGCCGGCAGGGAAAACTGC Direct Gain 0 0.951491676424587 NA NA prediction 0.902983352849174 Functional Gain - AP1S1 ENSG00000106367 CDS Human protein_coding chr7:100799894 chr7:100799894 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_39584 0 0 1 0 1 AP1S1 chr7:100799875 3'AG 100799875 Downstream 20bp 36444 chr12 124158173 124158173 1 + A G LIHC 124158173 + 124158153 124158193 41 TCCTTTCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAG TCCTTTCAGAAGGTGTTGGAGGTGACAGTGAGGTGGAAGAG Direct Gain 0 0.951488351962444 NA NA prediction 0.902976703924888 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124158173 chr12:124158173 synonymous SNV . 0 21 hm7G_associated_SNPs_39585 0 0 1 0 2 TCTN2 chr12:124158162 3'AG 124158162 Downstream 12bp 36445 chr12 124158173 124158173 1 + A G LIHC 124158173 + 124158153 124158193 41 TCCTTTCAGAAGGTGTTGGAAGTGACAGTGAGGTGGAAGAG TCCTTTCAGAAGGTGTTGGAGGTGACAGTGAGGTGGAAGAG Direct Gain 0 0.951488351962444 NA NA prediction 0.902976703924888 Functional Gain - TCTN2 ENSG00000168778 CDS Human protein_coding chr12:124158173 chr12:124158173 synonymous SNV . 0 21 hm7G_associated_SNPs_39585 0 0 1 0 2 TCTN2 chr12:124158165 3'AG 124158165 Downstream 9bp 36446 chr20 31885378 31885378 1 + C G GBM 31885378 + 31885358 31885398 41 AATGGCATGTATGCAGACCTCCTGCAGCTGGTGAAGGGTAG AATGGCATGTATGCAGACCTGCTGCAGCTGGTGAAGGGTAG Direct Gain 0 0.951409650705219 NA NA prediction 0.902819301410437 Functional Gain - BPIFB1 ENSG00000125999 CDS Human protein_coding chr20:31885378 chr20:31885378 synonymous SNV . 0 21 hm7G_associated_SNPs_39587 0 0 0 0 1 BPIFB1 chr20:31885331 3'AG 31885331 Downstream 48bp 36447 chr15 32983939 32983939 1 + A G COAD 32983939 + 32983919 32983959 41 ACTCCTTTACGAGAAGATGAAGGGAGGAGAGAGACGAAAGC ACTCCTTTACGAGAAGATGAGGGGAGGAGAGAGACGAAAGC Direct Gain 0 0.951371361428338 NA NA prediction 0.902742722856676 Functional Gain - SCG5 ENSG00000166922 CDS Human protein_coding chr15:32983939 chr15:32983939 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39588 0 0 1 0 1 SCG5 chr15:32983911 3'AG 32983911 Downstream 29bp 36448 chrX 48433592 48433592 1 + C G UCEC 48433592 + 48433572 48433612 41 TCCTCTGAAGAAGGAAAGCTCTTCGTGGGAGGGCTCAACTT TCCTCTGAAGAAGGAAAGCTGTTCGTGGGAGGGCTCAACTT Direct Gain 0 0.951309484050198 NA NA prediction 0.902618968100395 Functional Gain - RBM3 ENSG00000102317 CDS Human protein_coding chrX:48433592 chrX:48433592 synonymous SNV . 0 21 hm7G_associated_SNPs_39589 0 0 1 0 1 RBM3 chrX:48433556 3'AG 48433556 Downstream 37bp 36449 chr4 169099117 169099117 1 + A G STAD 169099117 + 169099097 169099137 41 GATCCTGTGCAACAAGAGCTACCAGCAGCTGCGGCTGGGTA GATCCTGTGCAACAAGAGCTGCCAGCAGCTGCGGCTGGGTA Direct Gain 0 0.95126964931921 NA NA prediction 0.90253929863842 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099117 chr4:169099117 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_39590 0 0 0 0 2 ANXA10 chr4:169099041 3'AG 169099041 Downstream 77bp 36450 chr4 169099117 169099117 1 + A G STAD 169099117 + 169099097 169099137 41 GATCCTGTGCAACAAGAGCTACCAGCAGCTGCGGCTGGGTA GATCCTGTGCAACAAGAGCTGCCAGCAGCTGCGGCTGGGTA Direct Gain 0 0.95126964931921 NA NA prediction 0.90253929863842 Functional Gain - ANXA10 ENSG00000109511 CDS Human protein_coding chr4:169099117 chr4:169099117 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_39590 0 0 0 0 2 ANXA10 chr4:169099134 5'GT 169099134 Upstream 18bp 36451 chr6 170881329 170881329 1 + A G UCEC 170881329 + 170881309 170881349 41 GAAAACATCTACCCTATTCTAAAGGGATTCAGGAAGACGAC GAAAACATCTACCCTATTCTGAAGGGATTCAGGAAGACGAC Direct Gain 0 0.951250059066346 NA NA prediction 0.902500118132692 Functional Gain - TBP ENSG00000112592 CDS Human protein_coding chr6:170881329 chr6:170881329 synonymous SNV . 0 21 hm7G_associated_SNPs_39591 0 0 1 0 1 TBP chr6:170881274 3'AG 170881274 Downstream 56bp 36452 chr12 120934303 120934303 1 + C G STAD 120934303 + 120934283 120934323 41 ACTCGGTGGAGTGCGCTACTCAGGCGCTGGAGAAATACAAC ACTCGGTGGAGTGCGCTACTGAGGCGCTGGAGAAATACAAC Direct Gain 0 0.951245421291467 NA NA prediction 0.902490842582935 Functional Gain - DYNLL1 ENSG00000088986 CDS Human protein_coding chr12:120934303 chr12:120934303 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39592 0 0 1 0 3 DYNLL1 chr12:120934205 3'AG 120934205 Downstream 99bp 36453 chr12 120934303 120934303 1 + C G STAD 120934303 + 120934283 120934323 41 ACTCGGTGGAGTGCGCTACTCAGGCGCTGGAGAAATACAAC ACTCGGTGGAGTGCGCTACTGAGGCGCTGGAGAAATACAAC Direct Gain 0 0.951245421291467 NA NA prediction 0.902490842582935 Functional Gain - DYNLL1 ENSG00000088986 CDS Human protein_coding chr12:120934303 chr12:120934303 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39592 0 0 1 0 3 DYNLL1 chr12:120934219 3'AG 120934219 Downstream 85bp 36454 chr12 120934303 120934303 1 + C G STAD 120934303 + 120934283 120934323 41 ACTCGGTGGAGTGCGCTACTCAGGCGCTGGAGAAATACAAC ACTCGGTGGAGTGCGCTACTGAGGCGCTGGAGAAATACAAC Direct Gain 0 0.951245421291467 NA NA prediction 0.902490842582935 Functional Gain - DYNLL1 ENSG00000088986 CDS Human protein_coding chr12:120934303 chr12:120934303 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39592 0 0 1 0 3 DYNLL1 chr12:120934356 5'GT 120934356 Upstream 54bp 36455 chr2 26999280 26999280 1 + C G LUAD 26999280 + 26999260 26999300 41 GCCCAGATCATCGTTGCCATCCAGATGGTGCTAGAGGAGAA GCCCAGATCATCGTTGCCATGCAGATGGTGCTAGAGGAGAA Direct Gain 0 0.951240926871743 NA NA prediction 0.902481853743485 Functional Gain - SLC35F6 ENSG00000213699 CDS Human protein_coding chr2:26999280 chr2:26999280 nonsynonymous SNV 0.978 3 21 hm7G_associated_SNPs_39593 0 0 1 0 1 SLC35F6 chr2:26999240 3'AG 26999240 Downstream 41bp 36456 chr17 16285400 16285400 1 + A G UCEC 16285400 + 16285380 16285420 41 CCGTACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCC CCGTACTCTTTCTGACTACAGCATCCAGAAGGAGTCGACCC Direct Gain 0 0.951238050394588 NA NA prediction 0.902476100789176 Functional Gain - UBB ENSG00000170315 CDS Human protein_coding chr17:16285400 chr17:16285400 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_39594 0 0 1 0 1 UBB chr17:16285444 5'GT 16285444 Upstream 45bp 36457 chr9 33271164 33271164 1 + A G STAD 33271164 + 33271144 33271184 41 TCTTAGGTTGATGCTATGAAACTGGGAGTAAAGGAAATGAA TCTTAGGTTGATGCTATGAAGCTGGGAGTAAAGGAAATGAA Direct Gain 0 0.951213852113788 NA NA prediction 0.902427704227575 Functional Gain - CHMP5 ENSG00000086065 CDS Human protein_coding chr9:33271164 chr9:33271164 synonymous SNV . 0 21 hm7G_associated_SNPs_39595 0 0 1 0 2 CHMP5 chr9:33271150 3'AG 33271150 Downstream 15bp 36458 chr9 33271164 33271164 1 + A G STAD 33271164 + 33271144 33271184 41 TCTTAGGTTGATGCTATGAAACTGGGAGTAAAGGAAATGAA TCTTAGGTTGATGCTATGAAGCTGGGAGTAAAGGAAATGAA Direct Gain 0 0.951213852113788 NA NA prediction 0.902427704227575 Functional Gain - CHMP5 ENSG00000086065 CDS Human protein_coding chr9:33271164 chr9:33271164 synonymous SNV . 0 21 hm7G_associated_SNPs_39595 0 0 1 0 2 CHMP5 chr9:33271221 5'GT 33271221 Upstream 58bp 36459 chr17 38121985 38121985 1 + A G SKCM 38121985 + 38121965 38122005 41 CGGGCCCTGGCCAGACAGCTAAACCCTCGAGGGGACCTGAC CGGGCCCTGGCCAGACAGCTGAACCCTCGAGGGGACCTGAC Direct Gain 0 0.951197360011845 NA NA prediction 0.902394720023689 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38121985 chr17:38121985 synonymous SNV . 0 21 hm7G_associated_SNPs_39596 0 0 0 0 1 GSDMA chr17:38121936 3'AG 38121936 Downstream 50bp 36460 chr6 149899972 149899972 1 + C G LUSC 149899972 + 149899952 149899992 41 TTATAGTGAAGAATGAAAATCTTGAAAATTTGGAGGAAAAA TTATAGTGAAGAATGAAAATGTTGAAAATTTGGAGGAAAAA Direct Gain 0 0.95118455209511 NA NA prediction 0.90236910419022 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149899972 chr6:149899972 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39599 0 0 1 0 1 GINM1 chr6:149899958 3'AG 149899958 Downstream 15bp 36461 chr10 25464659 25464659 1 - G C BLCA 25464659 - 25464639 25464679 41 CCCCGGCAGGCCCGCCAACTCGTAGCGGCCGGAGCAGTTGG CCCCGGCAGGCCCGCCAACTGGTAGCGGCCGGAGCAGTTGG Direct Gain 0 0.951142706522638 NA NA prediction 0.902285413045275 Functional Gain - GPR158 ENSG00000151025 CDS Human protein_coding chr10:25464659 chr10:25464659 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39603 0 0 0 0 1 GPR158 chr10:25464605 5'GT 25464605 Upstream 55bp 36462 chr5 50680543 50680543 1 + A G COAD 50680543 + 50680523 50680563 41 TGTTAGGGATGGGAAAACCTACTGTAAAAGAGATTATATCA TGTTAGGGATGGGAAAACCTGCTGTAAAAGAGATTATATCA Direct Gain 0 0.951098830423366 NA NA prediction 0.902197660846731 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50680543 chr5:50680543 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39605 0 0 0 0 1 ISL1 chr5:50680564 5'GT 50680564 Upstream 22bp 36463 chr2 10269026 10269026 1 + C G STAD 10269026 + 10269006 10269046 41 TCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGA TCAAACACCTGGTACACAAAGCATCGGAGGAGAGAGTAAGA Direct Gain 0 0.95109473327759 NA NA prediction 0.90218946655518 Functional Gain - RRM2 ENSG00000171848 CDS Human protein_coding chr2:10269026 chr2:10269026 nonsynonymous SNV 0.775 2 21 hm7G_associated_SNPs_39606 0 0 1 0 1 RRM2 chr2:10269079 5'GT 10269079 Upstream 54bp 36464 chr3 51981799 51981799 1 + C G LUAD 51981799 + 51981779 51981819 41 CACCATGTCGGCTACATGTTCCTGGGTGAGGTGGCCCTGGG CACCATGTCGGCTACATGTTGCTGGGTGAGGTGGCCCTGGG Direct Gain 0 0.951028757213002 NA NA prediction 0.902057514426004 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51981799 chr3:51981799 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_39608 0 0 0 0 1 PARP3 chr3:51981756 3'AG 51981756 Downstream 44bp 36465 chr5 50685739 50685739 1 + C G HNSC 50685739 + 50685719 50685759 41 AGCATCATGATGAAGCAACTCCAGCAGCAGCAGCCCAATGA AGCATCATGATGAAGCAACTGCAGCAGCAGCAGCCCAATGA Direct Gain 0 0.951001047295175 NA NA prediction 0.90200209459035 Functional Gain - ISL1 ENSG00000016082 CDS Human protein_coding chr5:50685739 chr5:50685739 synonymous SNV . 0 21 hm7G_associated_SNPs_39610 0 0 0 0 1 ISL1 chr5:50685766 5'GT 50685766 Upstream 28bp 36466 chrX 69503807 69503807 1 + A G UCEC 69503807 + 69503787 69503827 41 CTGATTCGTCCAGACAAGTCACTGCAGAACAGGGTGAAGAA CTGATTCGTCCAGACAAGTCGCTGCAGAACAGGGTGAAGAA Direct Gain 0 0.950925945583835 NA NA prediction 0.90185189116767 Functional Gain - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69503807 chrX:69503807 nonsynonymous SNV 0.095 1 21 hm7G_associated_SNPs_39611 0 0 0 0 2 RAB41 chrX:69503800 3'AG 69503800 Downstream 8bp 36467 chrX 69503807 69503807 1 + A G UCEC 69503807 + 69503787 69503827 41 CTGATTCGTCCAGACAAGTCACTGCAGAACAGGGTGAAGAA CTGATTCGTCCAGACAAGTCGCTGCAGAACAGGGTGAAGAA Direct Gain 0 0.950925945583835 NA NA prediction 0.90185189116767 Functional Gain - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69503807 chrX:69503807 nonsynonymous SNV 0.095 1 21 hm7G_associated_SNPs_39611 0 0 0 0 2 RAB41 chrX:69503893 5'GT 69503893 Upstream 87bp 36468 chr2 98263566 98263566 1 + T G GBM 98263566 + 98263546 98263586 41 TGAAGAGCAGGCGACTGGGTTGGAGAGGGAGATCATGCTGG TGAAGAGCAGGCGACTGGGTGGGAGAGGGAGATCATGCTGG Direct Gain 0 0.950900515491362 NA NA prediction 0.901801030982725 Functional Gain - COX5B ENSG00000135940 CDS Human protein_coding chr2:98263566 chr2:98263566 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39612 0 0 1 0 2 COX5B chr2:98263530 3'AG 98263530 Downstream 37bp 36469 chr2 98263566 98263566 1 + T G GBM 98263566 + 98263546 98263586 41 TGAAGAGCAGGCGACTGGGTTGGAGAGGGAGATCATGCTGG TGAAGAGCAGGCGACTGGGTGGGAGAGGGAGATCATGCTGG Direct Gain 0 0.950900515491362 NA NA prediction 0.901801030982725 Functional Gain - COX5B ENSG00000135940 CDS Human protein_coding chr2:98263566 chr2:98263566 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39612 0 0 1 0 2 COX5B chr2:98263603 5'GT 98263603 Upstream 38bp 36470 chr3 148577634 148577634 1 + T G SKCM 148577634 + 148577614 148577654 41 GGGGCTCTGACGACTGGGCTTATGACCAAGGAATCAGATAT GGGGCTCTGACGACTGGGCTGATGACCAAGGAATCAGATAT Direct Gain 0 0.950863783570246 NA NA prediction 0.901727567140492 Functional Gain - CPB1 ENSG00000153002 CDS Human protein_coding chr3:148577634 chr3:148577634 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39613 0 0 0 0 1 CPB1 chr3:148577602 3'AG 148577602 Downstream 33bp 36471 chr1 111784868 111784868 1 + T G UCEC 111784868 + 111784848 111784888 41 GGTTCAGTTCTTAAAGAATTTAAACCTGGGAGGAGCCATGA GGTTCAGTTCTTAAAGAATTGAAACCTGGGAGGAGCCATGA Direct Gain 0 0.950774508365264 NA NA prediction 0.901549016730529 Functional Gain - CHI3L2 ENSG00000064886 CDS Human protein_coding chr1:111784868 chr1:111784868 stopgain 0.996 0 21 hm7G_associated_SNPs_39614 0 0 0 0 1 CHI3L2 chr1:111784849 3'AG 111784849 Downstream 20bp 36472 chr10 23399216 23399216 1 + C G BLCA 23399216 + 23399196 23399236 41 ACAAGGAAGCAGGAATGTATCATTGCGTGTGCTGCGACAGT ACAAGGAAGCAGGAATGTATGATTGCGTGTGCTGCGACAGT Direct Gain 0 0.950761008620556 NA NA prediction 0.901522017241112 Functional Gain - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399216 chr10:23399216 nonsynonymous SNV 0.386 2 21 hm7G_associated_SNPs_39615 0 0 1 0 2 MSRB2 chr10:23399171 3'AG 23399171 Downstream 46bp 36473 chr10 23399216 23399216 1 + C G BLCA 23399216 + 23399196 23399236 41 ACAAGGAAGCAGGAATGTATCATTGCGTGTGCTGCGACAGT ACAAGGAAGCAGGAATGTATGATTGCGTGTGCTGCGACAGT Direct Gain 0 0.950761008620556 NA NA prediction 0.901522017241112 Functional Gain - MSRB2 ENSG00000148450 CDS Human protein_coding chr10:23399216 chr10:23399216 nonsynonymous SNV 0.386 2 21 hm7G_associated_SNPs_39615 0 0 1 0 2 MSRB2 chr10:23399247 5'GT 23399247 Upstream 32bp 36474 chr8 79610720 79610720 1 + C G BLCA 79610720 + 79610700 79610740 41 TTCAGACCTTATCTCCCTCTCATAAAGGGATAGCAGCCCCT TTCAGACCTTATCTCCCTCTGATAAAGGGATAGCAGCCCCT Direct Gain 0 0.950752860386169 NA NA prediction 0.901505720772338 Functional Gain - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79610720 chr8:79610720 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_39616 0 0 0 0 1 ZC2HC1A chr8:79610649 3'AG 79610649 Downstream 72bp 36475 chr18 43705725 43705725 1 + C G LUAD 43705725 + 43705705 43705745 41 TAAAGAATCCGTCTCTTGCTCAAGTGAAAATTGAAGAAGCA TAAAGAATCCGTCTCTTGCTGAAGTGAAAATTGAAGAAGCA Direct Gain 0 0.950691139763034 NA NA prediction 0.901382279526068 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43705725 chr18:43705725 stopgain 0.997 0 21 hm7G_associated_SNPs_39617 0 0 1 0 2 HAUS1 chr18:43705710 3'AG 43705710 Downstream 16bp 36476 chr18 43705725 43705725 1 + C G LUAD 43705725 + 43705705 43705745 41 TAAAGAATCCGTCTCTTGCTCAAGTGAAAATTGAAGAAGCA TAAAGAATCCGTCTCTTGCTGAAGTGAAAATTGAAGAAGCA Direct Gain 0 0.950691139763034 NA NA prediction 0.901382279526068 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43705725 chr18:43705725 stopgain 0.997 0 21 hm7G_associated_SNPs_39617 0 0 1 0 2 HAUS1 chr18:43705757 5'GT 43705757 Upstream 33bp 36477 chr16 20788868 20788868 1 + A G rs143213955 20788868 + 20788848 20788888 41 TGATTGTATCAGAGAACTCCAGAGAGGGGTGGGGGAACCTC TGATTGTATCAGAGAACTCCGGAGAGGGGTGGGGGAACCTC Direct Gain 0 0.950688040109024 NA NA prediction 0.901376080218049 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20788868 chr16:20788868 nonsynonymous SNV 0.988 2 21 hm7G_associated_SNPs_39618 0 0 1 0 1 ACSM3 chr16:20788902 5'GT 20788902 Upstream 35bp 36478 chr17 18692723 18692723 1 + A G LGG 18692723 + 18692703 18692743 41 ATGCGGAAGAGGAGACGACTAATAGACCAAGAAAAGCCAAA ATGCGGAAGAGGAGACGACTGATAGACCAAGAAAAGCCAAA Direct Gain 0 0.95068301157437 NA NA prediction 0.901366023148739 Functional Gain - TVP23B ENSG00000171928 CDS Human protein_coding chr17:18692723 chr17:18692723 nonsynonymous SNV 0.979 0 21 hm7G_associated_SNPs_39619 0 0 0 0 2 TVP23B chr17:18692666 3'AG 18692666 Downstream 58bp 36479 chr17 18692723 18692723 1 + A G LGG 18692723 + 18692703 18692743 41 ATGCGGAAGAGGAGACGACTAATAGACCAAGAAAAGCCAAA ATGCGGAAGAGGAGACGACTGATAGACCAAGAAAAGCCAAA Direct Gain 0 0.95068301157437 NA NA prediction 0.901366023148739 Functional Gain - TVP23B ENSG00000171928 CDS Human protein_coding chr17:18692723 chr17:18692723 nonsynonymous SNV 0.979 0 21 hm7G_associated_SNPs_39619 0 0 0 0 2 TVP23B chr17:18692748 5'GT 18692748 Upstream 26bp 36480 chr22 32506041 32506041 1 + A G rs17683704 32506041 + 32506021 32506061 41 TATGACCTATTTTGTGGGCTAGAGCAGCACGGTGCACCCAA TATGACCTATTTTGTGGGCTGGAGCAGCACGGTGCACCCAA Direct Gain 0 0.950632993287517 NA NA prediction 0.901265986575034 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32506041 chr22:32506041 synonymous SNV . 0 21 hm7G_associated_SNPs_39621 2 0 0 0 1 SLC5A1 chr22:32505977 3'AG 32505977 Downstream 65bp 36481 chr8 56910924 56910924 1 + A G LUAD 56910924 + 56910904 56910944 41 GATTGCAGAGGGAATGGCATACATCGAGCGGAAGAACTACA GATTGCAGAGGGAATGGCATGCATCGAGCGGAAGAACTACA Direct Gain 0 0.95058627104377 NA NA prediction 0.90117254208754 Functional Gain - LYN ENSG00000254087 CDS Human protein_coding chr8:56910924 chr8:56910924 nonsynonymous SNV 0.983 5 21 hm7G_associated_SNPs_39623 0 0 0 0 1 LYN chr8:56910905 3'AG 56910905 Downstream 20bp 36482 chr19 856014 856014 1 + C G rs148492780 856014 + 855994 856034 41 ATCCACGGAATTGCCTCCTTCGTCCGGGGAGGCTGCGCCTC ATCCACGGAATTGCCTCCTTGGTCCGGGGAGGCTGCGCCTC Direct Gain 0 0.950584514982802 NA NA prediction 0.901169029965605 Functional Gain - ELANE ENSG00000197561 CDS Human protein_coding chr19:856014 chr19:856014 nonsynonymous SNV 0.037 4 21 hm7G_associated_SNPs_39624 0 0 0 0 1 ELANE chr19:855958 3'AG 855958 Downstream 57bp 36483 chr10 5498204 5498204 1 + C G BLCA 5498204 + 5498184 5498224 41 AGATGTGAGAATGGGAGGCTCCTTTCGAGGAGCTTTCAGTA AGATGTGAGAATGGGAGGCTGCTTTCGAGGAGCTTTCAGTA Direct Gain 0 0.950565494236332 NA NA prediction 0.901130988472664 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5498204 chr10:5498204 nonsynonymous SNV 0.972 4 21 hm7G_associated_SNPs_39626 0 0 1 0 1 NET1 chr10:5498236 5'GT 5498236 Upstream 33bp 36484 chr20 57251342 57251342 1 + C G rs543224760 57251342 + 57251322 57251362 41 TCCTCGTTGGCGTGAAGTCTCGATAAGTGGCATTGGGTTTT TCCTCGTTGGCGTGAAGTCTGGATAAGTGGCATTGGGTTTT Direct Gain 0 0.950494789282308 NA NA prediction 0.900989578564616 Functional Gain - STX16 ENSG00000124222 CDS Human protein_coding chr20:57251342 chr20:57251342 nonsynonymous SNV 0.793 1 21 hm7G_associated_SNPs_39628 0 0 1 0 1 STX16 chr20:57251243 3'AG 57251243 Downstream 100bp 36485 chr6 123101495 123101495 1 + C G LUAD 123101495 + 123101475 123101515 41 AACCAACGGTAATTATCAGTCAAGAAGGAGACAAAGTGGTC AACCAACGGTAATTATCAGTGAAGAAGGAGACAAAGTGGTC Direct Gain 0 0.950484636087925 NA NA prediction 0.900969272175851 Functional Gain - FABP7 ENSG00000164434 CDS Human protein_coding chr6:123101495 chr6:123101495 nonsynonymous SNV 0.970 0 21 hm7G_associated_SNPs_39629 0 0 0 0 1 FABP7 chr6:123101436 3'AG 123101436 Downstream 60bp 36486 chr12 1889767 1889767 1 + A G PRAD 1889767 + 1889747 1889787 41 ATGGCTCTTCCACACAGTCTACTGCCACTCAGAGGGGGTCT ATGGCTCTTCCACACAGTCTGCTGCCACTCAGAGGGGGTCT Direct Gain 0 0.950435574870962 NA NA prediction 0.900871149741924 Functional Gain - ADIPOR2 ENSG00000006831 CDS Human protein_coding chr12:1889767 chr12:1889767 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39631 0 0 1 0 1 ADIPOR2 chr12:1889803 5'GT 1889803 Upstream 37bp 36487 chrX 38420807 38420807 1 + C G COAD 38420807 + 38420787 38420827 41 GGAGCTCTGTAGTATGGCATCGAGGAGAATGGAGACCAAAC GGAGCTCTGTAGTATGGCATGGAGGAGAATGGAGACCAAAC Direct Gain 0 0.950423471859487 NA NA prediction 0.900846943718975 Functional Gain - TSPAN7 ENSG00000156298 CDS Human protein_coding chrX:38420807 chrX:38420807 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39632 0 0 1 0 1 TSPAN7 chrX:38420880 5'GT 38420880 Upstream 74bp 36488 chr8 48962528 48962528 1 + C G BRCA 48962528 + 48962508 48962548 41 TATGAACGGAATAAATAATTCCAGTGGGATGGTAAGTTAAT TATGAACGGAATAAATAATTGCAGTGGGATGGTAAGTTAAT Direct Gain 0 0.9503816921447 NA NA prediction 0.900763384289401 Functional Gain - UBE2V2 ENSG00000169139 CDS Human protein_coding chr8:48962528 chr8:48962528 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_39633 0 0 1 0 1 UBE2V2 chr8:48962538 5'GT 48962538 Upstream 11bp 36489 chr17 9546373 9546373 1 + A G LGG 9546373 + 9546353 9546393 41 TCTGGTCAAAGTTTGGGATTATAATGAGGGTGAAGTGACTC TCTGGTCAAAGTTTGGGATTGTAATGAGGGTGAAGTGACTC Direct Gain 0 0.950319931696685 NA NA prediction 0.900639863393369 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9546373 chr17:9546373 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39634 0 0 0 0 1 CFAP52 chr17:9546340 3'AG 9546340 Downstream 34bp 36490 chr14 53100621 53100621 1 + A G LUAD 53100621 + 53100601 53100641 41 ACAATCCAAGACGATATGATAGTGATGATGACCTGCCAAGA ACAATCCAAGACGATATGATGGTGATGATGACCTGCCAAGA Direct Gain 0 0.950275556382596 NA NA prediction 0.900551112765191 Functional Gain - GPR137C ENSG00000180998 CDS Human protein_coding chr14:53100621 chr14:53100621 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_39638 0 0 1 0 2 GPR137C chr14:53100546 3'AG 53100546 Downstream 76bp 36491 chr14 53100621 53100621 1 + A G LUAD 53100621 + 53100601 53100641 41 ACAATCCAAGACGATATGATAGTGATGATGACCTGCCAAGA ACAATCCAAGACGATATGATGGTGATGATGACCTGCCAAGA Direct Gain 0 0.950275556382596 NA NA prediction 0.900551112765191 Functional Gain - GPR137C ENSG00000180998 CDS Human protein_coding chr14:53100621 chr14:53100621 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_39638 0 0 1 0 2 GPR137C chr14:53100664 5'GT 53100664 Upstream 44bp 36492 chr18 23772329 23772329 1 + A G LIHC 23772329 + 23772309 23772349 41 ATATGTAACTGAAATAGAAAAGGAAAAGGAAGAAGCAGAGA ATATGTAACTGAAATAGAAAGGGAAAAGGAAGAAGCAGAGA Direct Gain 0 0.95017436083412 NA NA prediction 0.900348721668239 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23772329 chr18:23772329 nonsynonymous SNV 0.983 0 21 hm7G_associated_SNPs_39640 0 0 0 0 1 PSMA8 chr18:23772283 3'AG 23772283 Downstream 47bp 36493 chr3 51978494 51978494 1 + A G rs139794805 51978494 + 51978474 51978514 41 GAAATTTCGGGAAAAGACCAAGAACAACTGGGCAGAGCGGG GAAATTTCGGGAAAAGACCAGGAACAACTGGGCAGAGCGGG Direct Gain 0 0.95014016038638 NA NA prediction 0.900280320772761 Functional Gain - PARP3 ENSG00000041880 CDS Human protein_coding chr3:51978494 chr3:51978494 nonsynonymous SNV 0.816 1 21 hm7G_associated_SNPs_39641 0 0 1 0 1 PARP3 chr3:51978406 3'AG 51978406 Downstream 89bp 36494 chr1 11204742 11204742 1 + C G BRCA 11204742 + 11204722 11204762 41 AGATCTGGCGGATGATCTCTCGTCGCTCGGGGACAAGTTTG AGATCTGGCGGATGATCTCTGGTCGCTCGGGGACAAGTTTG Direct Gain 0 0.950070545165184 NA NA prediction 0.900141090330368 Functional Gain - MTOR ENSG00000198793 CDS Human protein_coding chr1:11204742 chr1:11204742 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39642 0 0 0 0 1 MTOR chr1:11204724 3'AG 11204724 Downstream 19bp 36495 chr17 61601584 61601584 1 + A G rs138601922 61601584 + 61601564 61601604 41 CTTCTGCGAACTCTTCGGCTACTCCCGAGTGGAGGTGATGC CTTCTGCGAACTCTTCGGCTGCTCCCGAGTGGAGGTGATGC Direct Gain 0 0.950068616411376 NA NA prediction 0.900137232822752 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601584 chr17:61601584 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39643 0 0 0 0 2 KCNH6 chr17:61601500 3'AG 61601500 Downstream 85bp 36496 chr17 61601584 61601584 1 + A G rs138601922 61601584 + 61601564 61601604 41 CTTCTGCGAACTCTTCGGCTACTCCCGAGTGGAGGTGATGC CTTCTGCGAACTCTTCGGCTGCTCCCGAGTGGAGGTGATGC Direct Gain 0 0.950068616411376 NA NA prediction 0.900137232822752 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61601584 chr17:61601584 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39643 0 0 0 0 2 KCNH6 chr17:61601597 5'GT 61601597 Upstream 14bp 36497 chr17 61628166 61628166 1 + A G UCEC 61628166 + 61628146 61628186 41 GGGCAGCTTCGTGGAGGAGTACAACAACAAGGTGGGCCGGG GGGCAGCTTCGTGGAGGAGTGCAACAACAAGGTGGGCCGGG Direct Gain 0 0.950032207310242 NA NA prediction 0.900064414620484 Functional Gain - DCAF7 ENSG00000136485 CDS Human protein_coding chr17:61628166 chr17:61628166 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39645 0 0 1 0 1 DCAF7 chr17:61628176 5'GT 61628176 Upstream 11bp 36498 chr4 156830041 156830041 1 + C G COAD 156830041 + 156830021 156830061 41 TCATTTCTTAACCTTCAGGTCAGAGATGAAAGGAACATGCT TCATTTCTTAACCTTCAGGTGAGAGATGAAAGGAACATGCT Direct Gain 0 0.949992964133198 NA NA prediction 0.899985928266396 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156830041 chr4:156830041 synonymous SNV . 0 21 hm7G_associated_SNPs_39646 0 0 0 0 1 TDO2 chr4:156830039 3'AG 156830039 Downstream 3bp 36499 chr6 40347047 40347047 1 + A G CESC 40347047 + 40347027 40347067 41 TCACTGCGCAGGATCAAGCTACAATGAAGAGGAGGGAGGCA TCACTGCGCAGGATCAAGCTGCAATGAAGAGGAGGGAGGCA Direct Gain 0 0.94996859099909 NA NA prediction 0.899937181998179 Functional Gain - TDRG1 ENSG00000204091 ncRNA_exonic Human antisense chr6:40347047 chr6:40347047 . . 0 21 hm7G_associated_SNPs_39649 0 0 0 1 1 TDRG1 chr6:40347021 3'AG 40347021 Downstream 27bp 36500 chr9 91926227 91926227 1 + A G LGG 91926227 + 91926207 91926247 41 GATGGCCCACAAGCAGATCTACTACTCGGACAAGTACTTCG GATGGCCCACAAGCAGATCTGCTACTCGGACAAGTACTTCG Direct Gain 0 0.949881137874259 NA NA prediction 0.899762275748519 Functional Gain - CKS2 ENSG00000123975 CDS Human protein_coding chr9:91926227 chr9:91926227 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39653 0 0 1 0 1 CKS2 chr9:91926266 5'GT 91926266 Upstream 40bp 36501 chr17 27047805 27047805 1 + A G UCEC 27047805 + 27047785 27047825 41 TGAAAGGTGTCCACAGCCACAAAAAGAAGAAGATCCGCACG TGAAAGGTGTCCACAGCCACGAAAAGAAGAAGATCCGCACG Direct Gain 0 0.949870736195075 NA NA prediction 0.899741472390151 Functional Gain - RPL23A ENSG00000198242 CDS Human protein_coding chr17:27047805 chr17:27047805 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39654 0 0 0 0 1 RPL23A chr17:27047725 3'AG 27047725 Downstream 81bp 36502 chr5 113831627 113831627 1 + A G LUSC 113831627 + 113831607 113831647 41 TATGATATGATTTCTGACTTAAACGAAAGGAGTGAAGACTT TATGATATGATTTCTGACTTGAACGAAAGGAGTGAAGACTT Direct Gain 0 0.949832554361333 NA NA prediction 0.899665108722667 Functional Gain - KCNN2 ENSG00000080709 CDS Human protein_coding chr5:113831627 chr5:113831627 synonymous SNV . 0 21 hm7G_associated_SNPs_39656 0 0 0 1 1 KCNN2 chr5:113831592 3'AG 113831592 Downstream 36bp 36503 chr12 8673790 8673790 1 + A G UCEC 8673790 + 8673770 8673810 41 TTCTTGTTTATAACCAAGATAAATGGGCCTGGAATGATGTT TTCTTGTTTATAACCAAGATGAATGGGCCTGGAATGATGTT Direct Gain 0 0.949806581544514 NA NA prediction 0.899613163089027 Functional Gain - CLEC4D ENSG00000166527 CDS Human protein_coding chr12:8673790 chr12:8673790 nonsynonymous SNV 0.744 2 21 hm7G_associated_SNPs_39657 0 0 0 0 1 CLEC4D chr12:8673720 3'AG 8673720 Downstream 71bp 36504 chr11 63967681 63967681 1 + C G BLCA 63967681 + 63967661 63967701 41 AAGCATTATACAGAAGCCATCAAAAGGAACCCGAAAGATGC AAGCATTATACAGAAGCCATGAAAAGGAACCCGAAAGATGC Direct Gain 0 0.949802037761855 NA NA prediction 0.89960407552371 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63967681 chr11:63967681 nonsynonymous SNV 0.976 4 21 hm7G_associated_SNPs_39659 0 0 1 0 2 STIP1 chr11:63967641 3'AG 63967641 Downstream 41bp 36505 chr11 63967681 63967681 1 + C G BLCA 63967681 + 63967661 63967701 41 AAGCATTATACAGAAGCCATCAAAAGGAACCCGAAAGATGC AAGCATTATACAGAAGCCATGAAAAGGAACCCGAAAGATGC Direct Gain 0 0.949802037761855 NA NA prediction 0.89960407552371 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63967681 chr11:63967681 nonsynonymous SNV 0.976 4 21 hm7G_associated_SNPs_39659 0 0 1 0 2 STIP1 chr11:63967765 5'GT 63967765 Upstream 85bp 36506 chr17 4721854 4721854 1 + C G GBM 4721854 + 4721834 4721874 41 TGGCTTCGAGGGTGACATCTCCACGGGCGGTGGCAACTCCA TGGCTTCGAGGGTGACATCTGCACGGGCGGTGGCAACTCCA Direct Gain 0 0.949692784965615 NA NA prediction 0.899385569931231 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4721854 chr17:4721854 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_39662 0 0 0 0 2 PLD2 chr17:4721789 3'AG 4721789 Downstream 66bp 36507 chr17 4721854 4721854 1 + C G GBM 4721854 + 4721834 4721874 41 TGGCTTCGAGGGTGACATCTCCACGGGCGGTGGCAACTCCA TGGCTTCGAGGGTGACATCTGCACGGGCGGTGGCAACTCCA Direct Gain 0 0.949692784965615 NA NA prediction 0.899385569931231 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4721854 chr17:4721854 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_39662 0 0 0 0 2 PLD2 chr17:4721902 5'GT 4721902 Upstream 49bp 36508 chr3 184084567 184084567 1 + C G BLCA 184084567 + 184084547 184084587 41 GATTGAGGGAGATGAAACTTCTACTGAAGCAGCAACACGCC GATTGAGGGAGATGAAACTTGTACTGAAGCAGCAACACGCC Direct Gain 0 0.949627216779059 NA NA prediction 0.899254433558119 Functional Gain - POLR2H ENSG00000163882 CDS Human protein_coding chr3:184084567 chr3:184084567 nonsynonymous SNV 0.992 2 21 hm7G_associated_SNPs_39663 0 0 1 0 2 POLR2H chr3:184084505 3'AG 184084505 Downstream 63bp 36509 chr3 184084567 184084567 1 + C G BLCA 184084567 + 184084547 184084587 41 GATTGAGGGAGATGAAACTTCTACTGAAGCAGCAACACGCC GATTGAGGGAGATGAAACTTGTACTGAAGCAGCAACACGCC Direct Gain 0 0.949627216779059 NA NA prediction 0.899254433558119 Functional Gain - POLR2H ENSG00000163882 CDS Human protein_coding chr3:184084567 chr3:184084567 nonsynonymous SNV 0.992 2 21 hm7G_associated_SNPs_39663 0 0 1 0 2 POLR2H chr3:184084588 5'GT 184084588 Upstream 22bp 36510 chr6 133137650 133137650 1 + A G BLCA 133137650 + 133137630 133137670 41 CAACTGTGATGAGCCTATGTATGTCAAGTTGGTGGAGGCCC CAACTGTGATGAGCCTATGTGTGTCAAGTTGGTGGAGGCCC Direct Gain 0 0.94961815264259 NA NA prediction 0.89923630528518 Functional Gain - RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137650 chr6:133137650 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39664 0 0 0 0 2 RPS12 chr6:133137600 3'AG 133137600 Downstream 51bp 36511 chr6 133137650 133137650 1 + A G BLCA 133137650 + 133137630 133137670 41 CAACTGTGATGAGCCTATGTATGTCAAGTTGGTGGAGGCCC CAACTGTGATGAGCCTATGTGTGTCAAGTTGGTGGAGGCCC Direct Gain 0 0.94961815264259 NA NA prediction 0.89923630528518 Functional Gain - RPS12 ENSG00000112306 CDS Human protein_coding chr6:133137650 chr6:133137650 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39664 0 0 0 0 2 RPS12 chr6:133137702 5'GT 133137702 Upstream 53bp 36512 chr10 26513536 26513536 1 + T G UCEC 26513536 + 26513516 26513556 41 ACTAAAGAAAATGAGAGAAATCATTGGCTGGCCAGGGGGCT ACTAAAGAAAATGAGAGAAAGCATTGGCTGGCCAGGGGGCT Direct Gain 0 0.949608864015738 NA NA prediction 0.899217728031475 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26513536 chr10:26513536 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39665 0 0 0 0 2 GAD2 chr10:26513468 3'AG 26513468 Downstream 69bp 36513 chr10 26513536 26513536 1 + T G UCEC 26513536 + 26513516 26513556 41 ACTAAAGAAAATGAGAGAAATCATTGGCTGGCCAGGGGGCT ACTAAAGAAAATGAGAGAAAGCATTGGCTGGCCAGGGGGCT Direct Gain 0 0.949608864015738 NA NA prediction 0.899217728031475 Functional Gain - GAD2 ENSG00000136750 CDS Human protein_coding chr10:26513536 chr10:26513536 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39665 0 0 0 0 2 GAD2 chr10:26513580 5'GT 26513580 Upstream 45bp 36514 chr2 105954045 105954045 1 + A G LUAD 105954045 + 105954025 105954065 41 GGGGTCTCCTGGCGACGACCATGGCGGGGGATGTGGGCGGT GGGGTCTCCTGGCGACGACCGTGGCGGGGGATGTGGGCGGT Direct Gain 0 0.949585848415094 NA NA prediction 0.899171696830187 Functional Gain - C2orf49 ENSG00000135974 CDS Human protein_coding chr2:105954045 chr2:105954045 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_39666 0 0 1 0 1 C2orf49 chr2:105954143 5'GT 105954143 Upstream 99bp 36515 chr6 50805749 50805749 1 + T G UCEC 50805749 + 50805729 50805769 41 TAGAAAAAATCGGTTTGAATTTACCCGCGGGCAGGCGCAAA TAGAAAAAATCGGTTTGAATGTACCCGCGGGCAGGCGCAAA Direct Gain 0 0.949570878250798 NA NA prediction 0.899141756501597 Functional Gain - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50805749 chr6:50805749 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39667 0 0 0 0 2 TFAP2B chr6:50805688 3'AG 50805688 Downstream 62bp 36516 chr6 50805749 50805749 1 + T G UCEC 50805749 + 50805729 50805769 41 TAGAAAAAATCGGTTTGAATTTACCCGCGGGCAGGCGCAAA TAGAAAAAATCGGTTTGAATGTACCCGCGGGCAGGCGCAAA Direct Gain 0 0.949570878250798 NA NA prediction 0.899141756501597 Functional Gain - TFAP2B ENSG00000008196 CDS Human protein_coding chr6:50805749 chr6:50805749 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_39667 0 0 0 0 2 TFAP2B chr6:50805806 5'GT 50805806 Upstream 58bp 36517 chr4 48487014 48487014 1 + A G UCEC 48487014 + 48486994 48487034 41 GCCCCTGTGCCTGTGGATCTACAGCTGGGCTTGGATCAACA GCCCCTGTGCCTGTGGATCTGCAGCTGGGCTTGGATCAACA Direct Gain 0 0.949545702124792 NA NA prediction 0.899091404249584 Functional Gain - SLC10A4 ENSG00000145248 CDS Human protein_coding chr4:48487014 chr4:48487014 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39669 0 0 1 0 1 SLC10A4 chr4:48486949 3'AG 48486949 Downstream 66bp 36518 chr2 27597015 27597015 1 + C G UCEC 27597015 + 27596995 27597035 41 ACTTTAGTCTATTCTTAGTTCGAGAAAAAGAGGATGGAGCC ACTTTAGTCTATTCTTAGTTGGAGAAAAAGAGGATGGAGCC Direct Gain 0 0.949524952968959 NA NA prediction 0.899049905937919 Functional Gain - SNX17 ENSG00000115234 CDS Human protein_coding chr2:27597015 chr2:27597015 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_39670 0 0 1 0 2 SNX17 chr2:27596952 3'AG 27596952 Downstream 64bp 36519 chr2 27597015 27597015 1 + C G UCEC 27597015 + 27596995 27597035 41 ACTTTAGTCTATTCTTAGTTCGAGAAAAAGAGGATGGAGCC ACTTTAGTCTATTCTTAGTTGGAGAAAAAGAGGATGGAGCC Direct Gain 0 0.949524952968959 NA NA prediction 0.899049905937919 Functional Gain - SNX17 ENSG00000115234 CDS Human protein_coding chr2:27597015 chr2:27597015 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_39670 0 0 1 0 2 SNX17 chr2:27597042 5'GT 27597042 Upstream 28bp 36520 chr20 55208541 55208541 1 + A G KIRC 55208541 + 55208521 55208561 41 CCTCAGCTCTACGTCTAAATACAAAGTGACAGTGGCTGAAG CCTCAGCTCTACGTCTAAATGCAAAGTGACAGTGGCTGAAG Direct Gain 0 0.949514635571711 NA NA prediction 0.899029271143423 Functional Gain - TFAP2C ENSG00000087510 CDS Human protein_coding chr20:55208541 chr20:55208541 nonsynonymous SNV 0.994 5 21 hm7G_associated_SNPs_39671 0 0 0 0 1 TFAP2C chr20:55208625 5'GT 55208625 Upstream 85bp 36521 chr9 36674926 36674926 1 + A G LIHC 36674926 + 36674906 36674946 41 AAGAAGCATGTTGACTTTGTACAAAAGGGGTAAGAAGCACA AAGAAGCATGTTGACTTTGTGCAAAAGGGGTAAGAAGCACA Direct Gain 0 0.949508387482412 NA NA prediction 0.899016774964823 Functional Gain - MELK ENSG00000165304 CDS Human protein_coding chr9:36674926 chr9:36674926 synonymous SNV . 0 21 hm7G_associated_SNPs_39672 0 0 1 0 2 MELK chr9:36674831 3'AG 36674831 Downstream 96bp 36522 chr9 36674926 36674926 1 + A G LIHC 36674926 + 36674906 36674946 41 AAGAAGCATGTTGACTTTGTACAAAAGGGGTAAGAAGCACA AAGAAGCATGTTGACTTTGTGCAAAAGGGGTAAGAAGCACA Direct Gain 0 0.949508387482412 NA NA prediction 0.899016774964823 Functional Gain - MELK ENSG00000165304 CDS Human protein_coding chr9:36674926 chr9:36674926 synonymous SNV . 0 21 hm7G_associated_SNPs_39672 0 0 1 0 2 MELK chr9:36674934 5'GT 36674934 Upstream 9bp 36523 chr8 101164112 101164112 1 + A G LUSC 101164112 + 101164092 101164132 41 CAGATGCAGAGAATGTGGATACAGAATAATGTACAAGAAAA CAGATGCAGAGAATGTGGATGCAGAATAATGTACAAGAAAA Direct Gain 0 0.949438586723202 NA NA prediction 0.898877173446404 Functional Gain - POLR2K ENSG00000147669 CDS Human protein_coding chr8:101164112 chr8:101164112 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39673 0 0 1 0 1 POLR2K chr8:101164144 5'GT 101164144 Upstream 33bp 36524 chr5 125819171 125819171 1 + T G UCEC 125819171 + 125819151 125819191 41 TCAGGATTTCAATGATGAATTCTCAGATCTGGATGGAGTGG TCAGGATTTCAATGATGAATGCTCAGATCTGGATGGAGTGG Direct Gain 0 0.949425039206363 NA NA prediction 0.898850078412726 Functional Gain - GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125819171 chr5:125819171 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39674 0 0 1 0 2 GRAMD2B chr5:125819155 3'AG 125819155 Downstream 17bp 36525 chr5 125819171 125819171 1 + T G UCEC 125819171 + 125819151 125819191 41 TCAGGATTTCAATGATGAATTCTCAGATCTGGATGGAGTGG TCAGGATTTCAATGATGAATGCTCAGATCTGGATGGAGTGG Direct Gain 0 0.949425039206363 NA NA prediction 0.898850078412726 Functional Gain - GRAMD2B ENSG00000155324 CDS Human protein_coding chr5:125819171 chr5:125819171 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39674 0 0 1 0 2 GRAMD2B chr5:125819266 5'GT 125819266 Upstream 96bp 36526 chr1 218480910 218480910 1 + T G KIRP 218480910 + 218480890 218480930 41 GAAAGATTTCATCAGTGTTTTGAGAGGGATGGATGGAAGTA GAAAGATTTCATCAGTGTTTGGAGAGGGATGGATGGAAGTA Direct Gain 0 0.949386153424622 NA NA prediction 0.898772306849244 Functional Gain - RRP15 ENSG00000067533 CDS Human protein_coding chr1:218480910 chr1:218480910 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_39675 0 0 1 0 1 RRP15 chr1:218480974 5'GT 218480974 Upstream 65bp 36527 chr15 45981253 45981253 1 + C G GBM 45981253 + 45981233 45981273 41 TTAGTATGATGGCTACACATCATGTCCACTGGTGACCGGCT TTAGTATGATGGCTACACATGATGTCCACTGGTGACCGGCT Direct Gain 0 0.94935971010768 NA NA prediction 0.898719420215361 Functional Gain - SQOR ENSG00000137767 CDS Human protein_coding chr15:45981253 chr15:45981253 stopgain 0.977 1 21 hm7G_associated_SNPs_39677 0 0 1 0 1 SQOR chr15:45981237 3'AG 45981237 Downstream 17bp 36528 chr4 156725892 156725892 1 + A G COAD 156725892 + 156725872 156725912 41 AAATAAATGTGTCTGAATATACATACAGGTGAGAGAAAATG AAATAAATGTGTCTGAATATGCATACAGGTGAGAGAAAATG Direct Gain 0 0.949322614007381 NA NA prediction 0.898645228014762 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156725892 chr4:156725892 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_39679 0 0 0 0 1 GUCY1B3 chr4:156725899 5'GT 156725899 Upstream 8bp 36529 chr18 3272921 3272921 1 + A G PRAD 3272921 + 3272901 3272941 41 CGAGCAAAAAGGCAAAGACCAAGACCACCAAGAAGCGCCCT CGAGCAAAAAGGCAAAGACCGAGACCACCAAGAAGCGCCCT Direct Gain 0 0.949289734368532 NA NA prediction 0.898579468737063 Functional Gain - MYL12B ENSG00000118680 CDS Human protein_coding chr18:3272921 chr18:3272921 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39680 0 0 1 0 1 MYL12B chr18:3272882 3'AG 3272882 Downstream 40bp 36530 chr3 167506956 167506956 1 + A G rs61735307 167506956 + 167506936 167506976 41 TCTCTTTGCTGGTTCTGCAAAGTATGGCTACAGGGGCCACT TCTCTTTGCTGGTTCTGCAAGGTATGGCTACAGGGGCCACT Direct Gain 0 0.949235729360083 NA NA prediction 0.898471458720165 Functional Gain - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167506956 chr3:167506956 nonsynonymous SNV 0.055 0 21 hm7G_associated_SNPs_39681 1 0 0 0 1 SERPINI1 chr3:167506899 3'AG 167506899 Downstream 58bp 36531 chr13 88328479 88328479 1 + C G BLCA 88328479 + 88328459 88328499 41 AAGGGACTTGGACGAGGTATCCAAGCAGGAACTTTGCCCAA AAGGGACTTGGACGAGGTATGCAAGCAGGAACTTTGCCCAA Direct Gain 0 0.949180148742419 NA NA prediction 0.898360297484839 Functional Gain - SLITRK5 ENSG00000165300 CDS Human protein_coding chr13:88328479 chr13:88328479 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_39683 0 0 1 0 1 SLITRK5 chr13:88328462 3'AG 88328462 Downstream 18bp 36532 chr5 170834710 170834710 1 + T G UCEC 170834710 + 170834690 170834730 41 TTTTGTCTTAATAGGGTGGTTCTCTTCCCAAAGTGGAAGCC TTTTGTCTTAATAGGGTGGTGCTCTTCCCAAAGTGGAAGCC Direct Gain 0 0.949166086907302 NA NA prediction 0.898332173814605 Functional Gain - NPM1 ENSG00000181163 CDS Human protein_coding chr5:170834710 chr5:170834710 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39684 0 0 1 0 1 NPM1 chr5:170834778 5'GT 170834778 Upstream 69bp 36533 chr19 48244194 48244194 1 + A G rs7255434 48244194 + 48244174 48244214 41 TCGCTGAAGCCGAAGCTGCTAGAGGCACTGGACGAGATGCT TCGCTGAAGCCGAAGCTGCTGGAGGCACTGGACGAGATGCT Direct Gain 0 0.949109825190203 NA NA prediction 0.898219650380406 Functional Gain - EHD2 ENSG00000024422 CDS Human protein_coding chr19:48244194 chr19:48244194 synonymous SNV . 0 21 hm7G_associated_SNPs_39687 0 0 0 0 1 EHD2 chr19:48244138 3'AG 48244138 Downstream 57bp 36534 chr19 49447704 49447704 1 + T G KIRP 49447704 + 49447684 49447724 41 CAGTCCCAAAGGACTGCAATTTTGACAACGGGGCAGGCATG CAGTCCCAAAGGACTGCAATGTTGACAACGGGGCAGGCATG Direct Gain 0 0.949106717219416 NA NA prediction 0.898213434438831 Functional Gain - DHDH ENSG00000104808 CDS Human protein_coding chr19:49447704 chr19:49447704 nonsynonymous SNV 0.060 2 21 hm7G_associated_SNPs_39688 0 0 0 0 1 DHDH chr19:49447614 3'AG 49447614 Downstream 91bp 36535 chr3 186364068 186364068 1 + A G HNSC 186364068 + 186364048 186364088 41 CCCTTCTTACTTTGTGGAATACTTAATTAAAGAATCACCAT CCCTTCTTACTTTGTGGAATGCTTAATTAAAGAATCACCAT Direct Gain 0 0.949092972822081 NA NA prediction 0.898185945644163 Functional Gain - FETUB ENSG00000090512 CDS Human protein_coding chr3:186364068 chr3:186364068 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_39689 0 0 0 0 2 FETUB chr3:186364037 3'AG 186364037 Downstream 32bp 36536 chr3 186364068 186364068 1 + A G HNSC 186364068 + 186364048 186364088 41 CCCTTCTTACTTTGTGGAATACTTAATTAAAGAATCACCAT CCCTTCTTACTTTGTGGAATGCTTAATTAAAGAATCACCAT Direct Gain 0 0.949092972822081 NA NA prediction 0.898185945644163 Functional Gain - FETUB ENSG00000090512 CDS Human protein_coding chr3:186364068 chr3:186364068 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_39689 0 0 0 0 2 FETUB chr3:186364138 5'GT 186364138 Upstream 71bp 36537 chr2 177193631 177193631 1 + A G UCEC 177193631 + 177193611 177193651 41 CAGTGGTGTGATGAAGCTACAGTAGGGGAGGTGAGTGGTTC CAGTGGTGTGATGAAGCTACGGTAGGGGAGGTGAGTGGTTC Direct Gain 0 0.949085860362283 NA NA prediction 0.898171720724567 Functional Gain - MTX2 ENSG00000128654 CDS Human protein_coding chr2:177193631 chr2:177193631 synonymous SNV . 0 21 hm7G_associated_SNPs_39690 0 0 1 0 2 MTX2 chr2:177193602 3'AG 177193602 Downstream 30bp 36538 chr2 177193631 177193631 1 + A G UCEC 177193631 + 177193611 177193651 41 CAGTGGTGTGATGAAGCTACAGTAGGGGAGGTGAGTGGTTC CAGTGGTGTGATGAAGCTACGGTAGGGGAGGTGAGTGGTTC Direct Gain 0 0.949085860362283 NA NA prediction 0.898171720724567 Functional Gain - MTX2 ENSG00000128654 CDS Human protein_coding chr2:177193631 chr2:177193631 synonymous SNV . 0 21 hm7G_associated_SNPs_39690 0 0 1 0 2 MTX2 chr2:177193640 5'GT 177193640 Upstream 10bp 36539 chrX 51076246 51076246 1 + A G UCEC 51076246 + 51076226 51076266 41 GCCGAATATCTGGAGAAACTAAAGCTGGGCGGTTCCCCAAC GCCGAATATCTGGAGAAACTGAAGCTGGGCGGTTCCCCAAC Direct Gain 0 0.949001189648345 NA NA prediction 0.89800237929669 Functional Gain - NUDT10 ENSG00000122824 CDS Human protein_coding chrX:51076246 chrX:51076246 synonymous SNV . 0 21 hm7G_associated_SNPs_39691 0 0 0 0 1 NUDT10 chrX:51076311 5'GT 51076311 Upstream 66bp 36540 chr7 100483972 100483972 1 + C G HNSC 100483972 + 100483952 100483992 41 CAGATTGTGCGCAACGACATCAAGCTGGCGGCCAAGCTGAT CAGATTGTGCGCAACGACATGAAGCTGGCGGCCAAGCTGAT Direct Gain 0 0.948895663488682 NA NA prediction 0.897791326977363 Functional Gain - SRRT ENSG00000087087 CDS Human protein_coding chr7:100483972 chr7:100483972 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39693 0 0 1 0 1 SRRT chr7:100484056 5'GT 100484056 Upstream 85bp 36541 chr18 29625669 29625669 1 + C G LUSC 29625669 + 29625649 29625689 41 TGCTGGATCATTGTATTACTCATCACAGATCGGAACGGAGG TGCTGGATCATTGTATTACTGATCACAGATCGGAACGGAGG Direct Gain 0 0.948891714577937 NA NA prediction 0.897783429155874 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29625669 chr18:29625669 nonsynonymous SNV 0.596 1 21 hm7G_associated_SNPs_39694 0 0 1 0 2 RNF125 chr18:29625605 3'AG 29625605 Downstream 65bp 36542 chr18 29625669 29625669 1 + C G LUSC 29625669 + 29625649 29625689 41 TGCTGGATCATTGTATTACTCATCACAGATCGGAACGGAGG TGCTGGATCATTGTATTACTGATCACAGATCGGAACGGAGG Direct Gain 0 0.948891714577937 NA NA prediction 0.897783429155874 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29625669 chr18:29625669 nonsynonymous SNV 0.596 1 21 hm7G_associated_SNPs_39694 0 0 1 0 2 RNF125 chr18:29625695 5'GT 29625695 Upstream 27bp 36543 chr12 2908402 2908402 1 + C G CESC 2908402 + 2908382 2908422 41 GAACATTCCATCGTGTACCTCAAGCCCAGGTGAGGGGTGGG GAACATTCCATCGTGTACCTGAAGCCCAGGTGAGGGGTGGG Direct Gain 0 0.948796120950696 NA NA prediction 0.897592241901393 Functional Gain - FKBP4 ENSG00000004478 CDS Human protein_coding chr12:2908402 chr12:2908402 synonymous SNV . 0 21 hm7G_associated_SNPs_39697 0 0 1 0 1 FKBP4 chr12:2908410 5'GT 2908410 Upstream 9bp 36544 chr2 37586728 37586728 1 + C G BLCA 37586728 + 37586708 37586748 41 TTTTGTTTTGATCAGCACATCATGCAGCGAATTCAGAGGCT TTTTGTTTTGATCAGCACATGATGCAGCGAATTCAGAGGCT Direct Gain 0 0.948761643775821 NA NA prediction 0.897523287551641 Functional Gain - QPCT ENSG00000115828 CDS Human protein_coding chr2:37586728 chr2:37586728 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39698 0 0 0 0 1 QPCT chr2:37586723 3'AG 37586723 Downstream 6bp 36545 chr15 45250685 45250685 1 + T G rs147135555 45250685 + 45250665 45250705 41 GTGGCTTTGGGTCATTTCATTCTTCCTCCTGCGTGCCTGCA GTGGCTTTGGGTCATTTCATGCTTCCTCCTGCGTGCCTGCA Direct Gain 0 0.948757743646832 NA NA prediction 0.897515487293665 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45250685 chr15:45250685 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_39699 0 0 0 0 1 TERB2 chr15:45250710 5'GT 45250710 Upstream 26bp 36546 chr11 85961438 85961438 1 + A G LIHC 85961438 + 85961418 85961458 41 GAAAAGTTGGGGAAAGGGAAAATGGAAGTCAAAGAAATGCA GAAAAGTTGGGGAAAGGGAAGATGGAAGTCAAAGAAATGCA Direct Gain 0 0.948642911199691 NA NA prediction 0.897285822399382 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85961438 chr11:85961438 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39701 0 0 1 0 1 EED chr11:85961490 5'GT 85961490 Upstream 53bp 36547 chr20 20007546 20007546 1 + A G rs117699410 20007546 + 20007526 20007566 41 GCTAAACTTATGGAGTTACTAGAGGAGATTTCAGAAAGGTG GCTAAACTTATGGAGTTACTGGAGGAGATTTCAGAAAGGTG Direct Gain 0 0.948636891810653 NA NA prediction 0.897273783621305 Functional Gain - NAA20 ENSG00000173418 CDS Human protein_coding chr20:20007546 chr20:20007546 synonymous SNV . 0 21 hm7G_associated_SNPs_39702 0 0 1 0 1 NAA20 chr20:20007563 5'GT 20007563 Upstream 18bp 36548 chr6 7398940 7398940 1 + C G BLCA 7398940 + 7398920 7398960 41 TTTTTGGTTAGGTATCGCATCAAAGATAAGGCAGACAGAGC TTTTTGGTTAGGTATCGCATGAAAGATAAGGCAGACAGAGC Direct Gain 0 0.94861191996513 NA NA prediction 0.89722383993026 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7398940 chr6:7398940 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39704 0 0 1 0 2 RIOK1 chr6:7398931 3'AG 7398931 Downstream 10bp 36549 chr6 7398940 7398940 1 + C G BLCA 7398940 + 7398920 7398960 41 TTTTTGGTTAGGTATCGCATCAAAGATAAGGCAGACAGAGC TTTTTGGTTAGGTATCGCATGAAAGATAAGGCAGACAGAGC Direct Gain 0 0.94861191996513 NA NA prediction 0.89722383993026 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7398940 chr6:7398940 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39704 0 0 1 0 2 RIOK1 chr6:7398973 5'GT 7398973 Upstream 34bp 36550 chr6 7410637 7410637 1 + C G LUSC 7410637 + 7410617 7410657 41 AGGCCATGGAAATAGCATCTCAAAGGACCAAGGAAGAACGG AGGCCATGGAAATAGCATCTGAAAGGACCAAGGAAGAACGG Direct Gain 0 0.948606437853211 NA NA prediction 0.897212875706421 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7410637 chr6:7410637 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_39705 0 0 1 0 2 RIOK1 chr6:7410619 3'AG 7410619 Downstream 19bp 36551 chr6 7410637 7410637 1 + C G LUSC 7410637 + 7410617 7410657 41 AGGCCATGGAAATAGCATCTCAAAGGACCAAGGAAGAACGG AGGCCATGGAAATAGCATCTGAAAGGACCAAGGAAGAACGG Direct Gain 0 0.948606437853211 NA NA prediction 0.897212875706421 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7410637 chr6:7410637 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_39705 0 0 1 0 2 RIOK1 chr6:7410684 5'GT 7410684 Upstream 48bp 36552 chr3 186504984 186504984 1 + C G HNSC 186504984 + 186504964 186505004 41 ACACAGGCTGTTATTTTTCTCAATACGAGGCGCAAGGTGGA ACACAGGCTGTTATTTTTCTGAATACGAGGCGCAAGGTGGA Direct Gain 0 0.948483047119055 NA NA prediction 0.89696609423811 Functional Gain - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504984 chr3:186504984 synonymous SNV . 0 21 hm7G_associated_SNPs_39709 0 0 1 0 2 EIF4A2 chr3:186504916 3'AG 186504916 Downstream 69bp 36553 chr3 186504984 186504984 1 + C G HNSC 186504984 + 186504964 186505004 41 ACACAGGCTGTTATTTTTCTCAATACGAGGCGCAAGGTGGA ACACAGGCTGTTATTTTTCTGAATACGAGGCGCAAGGTGGA Direct Gain 0 0.948483047119055 NA NA prediction 0.89696609423811 Functional Gain - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186504984 chr3:186504984 synonymous SNV . 0 21 hm7G_associated_SNPs_39709 0 0 1 0 2 EIF4A2 chr3:186505053 5'GT 186505053 Upstream 70bp 36554 chr5 33461376 33461376 1 + C G GBM 33461376 + 33461356 33461396 41 GAAAAATTCCTTGGAGATATCGAAGTATGGGATCAAGCTGA GAAAAATTCCTTGGAGATATGGAAGTATGGGATCAAGCTGA Direct Gain 0 0.948466548827075 NA NA prediction 0.896933097654151 Functional Gain - TARS ENSG00000113407 CDS Human protein_coding chr5:33461376 chr5:33461376 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39710 0 0 1 0 1 TARS chr5:33461400 5'GT 33461400 Upstream 25bp 36555 chr8 69243572 69243572 1 - G C CESC 69243572 - 69243552 69243592 41 TCCTCCACAGCGCCTTACCTCAAACAGGGGACCGATCTTGT TCCTCCACAGCGCCTTACCTGAAACAGGGGACCGATCTTGT Direct Gain 0 0.948465872250794 NA NA prediction 0.896931744501587 Functional Gain - C8orf34 ENSG00000165084;ENSG00000248801 CDS Human other chr8:69243572 chr8:69243572 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39711 0 0 0 0 1 C8orf34 chr8:69243542 5'GT 69243542 Upstream 31bp 36556 chr8 42220141 42220141 1 + A G GBM 42220141 + 42220121 42220161 41 ATTCTACAGCCAAAACTGTTACATCAGGTTGTGGAGCAGTT ATTCTACAGCCAAAACTGTTGCATCAGGTTGTGGAGCAGTT Direct Gain 0 0.948409083180814 NA NA prediction 0.896818166361628 Functional Gain - POLB ENSG00000070501 CDS Human protein_coding chr8:42220141 chr8:42220141 synonymous SNV . 0 21 hm7G_associated_SNPs_39714 0 0 1 0 2 POLB chr8:42220130 3'AG 42220130 Downstream 12bp 36557 chr8 42220141 42220141 1 + A G GBM 42220141 + 42220121 42220161 41 ATTCTACAGCCAAAACTGTTACATCAGGTTGTGGAGCAGTT ATTCTACAGCCAAAACTGTTGCATCAGGTTGTGGAGCAGTT Direct Gain 0 0.948409083180814 NA NA prediction 0.896818166361628 Functional Gain - POLB ENSG00000070501 CDS Human protein_coding chr8:42220141 chr8:42220141 synonymous SNV . 0 21 hm7G_associated_SNPs_39714 0 0 1 0 2 POLB chr8:42220216 5'GT 42220216 Upstream 76bp 36558 chr1 159163251 159163251 1 + T G READ 159163251 + 159163231 159163271 41 TCATCACTGGTTATAAATCTTCATTACGGGAAAAAGACACA TCATCACTGGTTATAAATCTGCATTACGGGAAAAAGACACA Direct Gain 0 0.948397781056855 NA NA prediction 0.89679556211371 Functional Gain - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159163251 chr1:159163251 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_39715 0 0 0 0 2 CADM3 chr1:159163213 3'AG 159163213 Downstream 39bp 36559 chr1 159163251 159163251 1 + T G READ 159163251 + 159163231 159163271 41 TCATCACTGGTTATAAATCTTCATTACGGGAAAAAGACACA TCATCACTGGTTATAAATCTGCATTACGGGAAAAAGACACA Direct Gain 0 0.948397781056855 NA NA prediction 0.89679556211371 Functional Gain - CADM3 ENSG00000162706 CDS Human protein_coding chr1:159163251 chr1:159163251 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_39715 0 0 0 0 2 CADM3 chr1:159163350 5'GT 159163350 Upstream 100bp 36560 chr14 77797454 77797454 1 + C G BLCA 77797454 + 77797434 77797474 41 TACCCTACCATCAGCTCCATCAACAAGAGGCTGCTGGTCTT TACCCTACCATCAGCTCCATGAACAAGAGGCTGCTGGTCTT Direct Gain 0 0.948377857422257 NA NA prediction 0.896755714844513 Functional Gain - GSTZ1 ENSG00000100577 CDS Human protein_coding chr14:77797454 chr14:77797454 nonsynonymous SNV 0.781 4 21 hm7G_associated_SNPs_39716 0 0 0 0 1 GSTZ1 chr14:77797412 3'AG 77797412 Downstream 43bp 36561 chr3 40456324 40456324 1 + T G CESC 40456324 + 40456304 40456344 41 CAACTATTTAATGGGAAATTTCCTGGAGGTGTGTGCAAACA CAACTATTTAATGGGAAATTGCCTGGAGGTGTGTGCAAACA Direct Gain 0 0.948353012069779 NA NA prediction 0.896706024139557 Functional Gain - ENTPD3 ENSG00000168032 CDS Human protein_coding chr3:40456324 chr3:40456324 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39717 0 0 0 0 1 ENTPD3 chr3:40456331 5'GT 40456331 Upstream 8bp 36562 chr8 41399389 41399389 1 + A G COAD 41399389 + 41399369 41399409 41 AGAGAACGACAAGAAAACATACTGGTAGAACCAGACACAGA AGAGAACGACAAGAAAACATGCTGGTAGAACCAGACACAGA Direct Gain 0 0.948346971497555 NA NA prediction 0.896693942995111 Functional Gain - GINS4 ENSG00000147536 CDS Human protein_coding chr8:41399389 chr8:41399389 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_39718 0 0 1 0 2 GINS4 chr8:41399328 3'AG 41399328 Downstream 62bp 36563 chr8 41399389 41399389 1 + A G COAD 41399389 + 41399369 41399409 41 AGAGAACGACAAGAAAACATACTGGTAGAACCAGACACAGA AGAGAACGACAAGAAAACATGCTGGTAGAACCAGACACAGA Direct Gain 0 0.948346971497555 NA NA prediction 0.896693942995111 Functional Gain - GINS4 ENSG00000147536 CDS Human protein_coding chr8:41399389 chr8:41399389 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_39718 0 0 1 0 2 GINS4 chr8:41399418 5'GT 41399418 Upstream 30bp 36564 chr1 236911049 236911049 1 + A G LUSC 236911049 + 236911029 236911069 41 GGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAGAAGCC GGGACCGACTGGGAACGCTTGCTCAGAAGAGGAGAGAAGCC Direct Gain 0 0.94829522880037 NA NA prediction 0.89659045760074 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236911049 chr1:236911049 nonsynonymous SNV 0.965 3 21 hm7G_associated_SNPs_39720 0 0 1 0 2 ACTN2 chr1:236910967 3'AG 236910967 Downstream 83bp 36565 chr1 236911049 236911049 1 + A G LUSC 236911049 + 236911029 236911069 41 GGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAGAAGCC GGGACCGACTGGGAACGCTTGCTCAGAAGAGGAGAGAAGCC Direct Gain 0 0.94829522880037 NA NA prediction 0.89659045760074 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236911049 chr1:236911049 nonsynonymous SNV 0.965 3 21 hm7G_associated_SNPs_39720 0 0 1 0 2 ACTN2 chr1:236911075 5'GT 236911075 Upstream 27bp 36566 chr10 114169396 114169396 1 + A G LIHC 114169396 + 114169376 114169416 41 TTGATGATGACCTGAAGCAAAGAGGGGAGAAGAGTGGAATT TTGATGATGACCTGAAGCAAGGAGGGGAGAAGAGTGGAATT Direct Gain 0 0.948181915307174 NA NA prediction 0.896363830614348 Functional Gain - ACSL5 ENSG00000197142 CDS Human protein_coding chr10:114169396 chr10:114169396 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_39722 0 0 1 0 1 ACSL5 chr10:114169443 5'GT 114169443 Upstream 48bp 36567 chr2 204735579 204735579 1 + A G STAD 204735579 + 204735559 204735599 41 GGCCATGGACACGGGACTCTACATCTGCAAGGTGGAGCTCA GGCCATGGACACGGGACTCTGCATCTGCAAGGTGGAGCTCA Direct Gain 0 0.948165534290239 NA NA prediction 0.896331068580478 Functional Gain - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204735579 chr2:204735579 nonsynonymous SNV 0.817 5 21 hm7G_associated_SNPs_39723 0 0 0 0 1 CTLA4 chr2:204735656 5'GT 204735656 Upstream 78bp 36568 chr1 228285409 228285409 1 + A G COAD 228285409 + 228285389 228285429 41 TGTCCTCCTGGTGTTCGCCAACAAGCAGGTAGGCGCCCGGG TGTCCTCCTGGTGTTCGCCAGCAAGCAGGTAGGCGCCCGGG Direct Gain 0 0.948157401747048 NA NA prediction 0.896314803494096 Functional Gain - ARF1 ENSG00000143761 CDS Human protein_coding chr1:228285409 chr1:228285409 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_39724 0 0 1 0 1 ARF1 chr1:228285416 5'GT 228285416 Upstream 8bp 36569 chr1 32503557 32503557 1 + C G BLCA 32503557 + 32503537 32503577 41 CACCTACTGTGAGGGGTGCTCCAGCACCAAGAGCACGGACA CACCTACTGTGAGGGGTGCTGCAGCACCAAGAGCACGGACA Direct Gain 0 0.948155922499202 NA NA prediction 0.896311844998405 Functional Gain - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32503557 chr1:32503557 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_39725 0 0 1 0 1 KHDRBS1 chr1:32503637 5'GT 32503637 Upstream 81bp 36570 chr10 15014543 15014543 1 + A G SARC 15014543 + 15014523 15014563 41 GCCGGAGACAGGATATGTGAAGAAACTTCAGAGAAGGGACA GCCGGAGACAGGATATGTGAGGAAACTTCAGAGAAGGGACA Direct Gain 0 0.948138216055209 NA NA prediction 0.896276432110418 Functional Gain - MEIG1 ENSG00000197889 CDS Human protein_coding chr10:15014543 chr10:15014543 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39726 0 0 0 0 1 MEIG1 chr10:15014512 3'AG 15014512 Downstream 32bp 36571 chr9 127119181 127119181 1 - T C BLCA 127119181 - 127119161 127119201 41 TTCTCAGGAGGAGGAAGCCAAGAATCTGGTGAGCGAAGCCA TTCTCAGGAGGAGGAAGCCAGGAATCTGGTGAGCGAAGCCA Direct Gain 0 0.948101148907164 NA NA prediction 0.896202297814327 Functional Gain - PSMB7 ENSG00000136930 CDS Human protein_coding chr9:127119181 chr9:127119181 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_39729 0 0 1 0 1 PSMB7 chr9:127119194 3'AG 127119194 Downstream 14bp 36572 chr20 21309246 21309246 1 + C G CESC 21309246 + 21309226 21309266 41 TTCAAGGAGGTTCAGGGCATCAAAAGAAGGAATGGAAGCAG TTCAAGGAGGTTCAGGGCATGAAAAGAAGGAATGGAAGCAG Direct Gain 0 0.948091607540002 NA NA prediction 0.896183215080004 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21309246 chr20:21309246 stopgain 1.000 1 21 hm7G_associated_SNPs_39730 0 0 1 0 2 XRN2 chr20:21309197 3'AG 21309197 Downstream 50bp 36573 chr20 21309246 21309246 1 + C G CESC 21309246 + 21309226 21309266 41 TTCAAGGAGGTTCAGGGCATCAAAAGAAGGAATGGAAGCAG TTCAAGGAGGTTCAGGGCATGAAAAGAAGGAATGGAAGCAG Direct Gain 0 0.948091607540002 NA NA prediction 0.896183215080004 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21309246 chr20:21309246 stopgain 1.000 1 21 hm7G_associated_SNPs_39730 0 0 1 0 2 XRN2 chr20:21309308 5'GT 21309308 Upstream 63bp 36574 chr13 73309101 73309101 1 + A G UCEC 73309101 + 73309081 73309121 41 TCTTTATCTTTGTATAGAATAGATAAAGATGTGGAAGACAA TCTTTATCTTTGTATAGAATGGATAAAGATGTGGAAGACAA Direct Gain 0 0.948045515876398 NA NA prediction 0.896091031752797 Functional Gain - BORA ENSG00000136122 CDS Human protein_coding chr13:73309101 chr13:73309101 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39733 0 0 1 0 2 BORA chr13:73309098 3'AG 73309098 Downstream 4bp 36575 chr13 73309101 73309101 1 + A G UCEC 73309101 + 73309081 73309121 41 TCTTTATCTTTGTATAGAATAGATAAAGATGTGGAAGACAA TCTTTATCTTTGTATAGAATGGATAAAGATGTGGAAGACAA Direct Gain 0 0.948045515876398 NA NA prediction 0.896091031752797 Functional Gain - BORA ENSG00000136122 CDS Human protein_coding chr13:73309101 chr13:73309101 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39733 0 0 1 0 2 BORA chr13:73309143 5'GT 73309143 Upstream 43bp 36576 chr2 75196543 75196543 1 + A G UCEC 75196543 + 75196523 75196563 41 TTTGTATGTTTAGGTACTTTAGATTGATTGCCGAGCGGGGC TTTGTATGTTTAGGTACTTTGGATTGATTGCCGAGCGGGGC Direct Gain 0 0.948028112738073 NA NA prediction 0.896056225476147 Functional Gain - POLE4 ENSG00000115350 CDS Human protein_coding chr2:75196543 chr2:75196543 synonymous SNV . 0 21 hm7G_associated_SNPs_39734 0 0 1 0 1 POLE4 chr2:75196536 3'AG 75196536 Downstream 8bp 36577 chr1 25678131 25678131 1 + C G UCEC 25678131 + 25678111 25678151 41 ATACAGGATTAATGCAGTATCGAATGGACAAGTCCGAGGTG ATACAGGATTAATGCAGTATGGAATGGACAAGTCCGAGGTG Direct Gain 0 0.947929258022016 NA NA prediction 0.895858516044032 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25678131 chr1:25678131 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_39737 0 0 1 1 2 TMEM50A chr1:25678117 3'AG 25678117 Downstream 15bp 36578 chr1 25678131 25678131 1 + C G UCEC 25678131 + 25678111 25678151 41 ATACAGGATTAATGCAGTATCGAATGGACAAGTCCGAGGTG ATACAGGATTAATGCAGTATGGAATGGACAAGTCCGAGGTG Direct Gain 0 0.947929258022016 NA NA prediction 0.895858516044032 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25678131 chr1:25678131 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_39737 0 0 1 1 2 TMEM50A chr1:25678184 5'GT 25678184 Upstream 54bp 36579 chr3 148714244 148714244 1 + T G STAD 148714244 + 148714224 148714264 41 ACAGTATTCAAAATGTGTATTCATGGATGCAGATACTCTGG ACAGTATTCAAAATGTGTATGCATGGATGCAGATACTCTGG Direct Gain 0 0.947912762938078 NA NA prediction 0.895825525876156 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148714244 chr3:148714244 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39738 0 0 0 0 1 GYG1 chr3:148714263 5'GT 148714263 Upstream 20bp 36580 chr22 25043021 25043021 1 + C G KIRP 25043021 + 25043001 25043041 41 CGCCAGTGCGTGGAGGAGATCGAGCGCCGAGGCATGGAGGA CGCCAGTGCGTGGAGGAGATGGAGCGCCGAGGCATGGAGGA Direct Gain 0 0.94780100282784 NA NA prediction 0.895602005655681 Functional Gain - BCRP3;POM121L10P ENSG00000215481;ENSG00000224124 ncRNA_exonic Human other chr22:25043021 chr22:25043021 . . 0 21 hm7G_associated_SNPs_39741 0 0 0 0 2 BCRP3;POM121L10P chr22:25042970 3'AG 25042970 Downstream 52bp 36581 chr22 25043021 25043021 1 + C G KIRP 25043021 + 25043001 25043041 41 CGCCAGTGCGTGGAGGAGATCGAGCGCCGAGGCATGGAGGA CGCCAGTGCGTGGAGGAGATGGAGCGCCGAGGCATGGAGGA Direct Gain 0 0.94780100282784 NA NA prediction 0.895602005655681 Functional Gain - BCRP3;POM121L10P ENSG00000215481;ENSG00000224124 ncRNA_exonic Human other chr22:25043021 chr22:25043021 . . 0 21 hm7G_associated_SNPs_39741 0 0 0 0 2 BCRP3;POM121L10P chr22:25043042 5'GT 25043042 Upstream 22bp 36582 chr9 133542052 133542052 1 + C G HNSC 133542052 + 133542032 133542072 41 GGTGATCATCGCTCAGAGCTCCATCCCTGGCGAGGGCCTCG GGTGATCATCGCTCAGAGCTGCATCCCTGGCGAGGGCCTCG Direct Gain 0 0.947741835599117 NA NA prediction 0.895483671198233 Functional Gain - PRDM12 ENSG00000130711 CDS Human protein_coding chr9:133542052 chr9:133542052 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_39743 0 0 0 0 1 PRDM12 chr9:133541995 3'AG 133541995 Downstream 58bp 36583 chr18 624894 624894 1 + A G COAD 624894 + 624874 624914 41 AAACTTCTGAATGAAGTTCAAGAACATCTGGAGGAAGAAGA AAACTTCTGAATGAAGTTCAGGAACATCTGGAGGAAGAAGA Direct Gain 0 0.947659455438609 NA NA prediction 0.895318910877218 Functional Gain - CLUL1 ENSG00000079101 CDS Human protein_coding chr18:624894 chr18:624894 synonymous SNV . 0 21 hm7G_associated_SNPs_39748 0 0 0 0 1 CLUL1 chr18:624865 3'AG 624865 Downstream 30bp 36584 chr4 17517099 17517099 1 + A G rs1551091 17517099 + 17517079 17517119 41 GGGCTCTTCCGAGGGTGTAAAGTGCGGCAGTGTGGGCTTGG GGGCTCTTCCGAGGGTGTAAGGTGCGGCAGTGTGGGCTTGG Direct Gain 0 0.947630753247089 NA NA prediction 0.895261506494178 Functional Gain - CLRN2 ENSG00000249581 CDS Human protein_coding chr4:17517099 chr4:17517099 synonymous SNV . 0 21 hm7G_associated_SNPs_39749 0 0 0 0 1 CLRN2 chr4:17517142 5'GT 17517142 Upstream 44bp 36585 chr2 178082478 178082478 1 + A G GBM 178082478 + 178082458 178082498 41 TTATAGTAGTAGAGGGGGCTATGGTGGTGGTGGACCAGGAT TTATAGTAGTAGAGGGGGCTGTGGTGGTGGTGGACCAGGAT Direct Gain 0 0.947618159843906 NA NA prediction 0.895236319687812 Functional Gain - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178082478 chr2:178082478 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_39751 0 0 1 0 2 HNRNPA3 chr2:178082433 3'AG 178082433 Downstream 46bp 36586 chr2 178082478 178082478 1 + A G GBM 178082478 + 178082458 178082498 41 TTATAGTAGTAGAGGGGGCTATGGTGGTGGTGGACCAGGAT TTATAGTAGTAGAGGGGGCTGTGGTGGTGGTGGACCAGGAT Direct Gain 0 0.947618159843906 NA NA prediction 0.895236319687812 Functional Gain - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178082478 chr2:178082478 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_39751 0 0 1 0 2 HNRNPA3 chr2:178082573 5'GT 178082573 Upstream 96bp 36587 chr12 104378626 104378626 1 + C G BLCA 104378626 + 104378606 104378646 41 AACTGAAGGACTTAAGAGATCAGTTGAAAGGCATTGAACGA AACTGAAGGACTTAAGAGATGAGTTGAAAGGCATTGAACGA Direct Gain 0 0.947584365497861 NA NA prediction 0.895168730995722 Functional Gain - TDG ENSG00000139372 CDS Human protein_coding chr12:104378626 chr12:104378626 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_39753 0 0 1 0 2 TDG chr12:104378527 3'AG 104378527 Downstream 100bp 36588 chr12 104378626 104378626 1 + C G BLCA 104378626 + 104378606 104378646 41 AACTGAAGGACTTAAGAGATCAGTTGAAAGGCATTGAACGA AACTGAAGGACTTAAGAGATGAGTTGAAAGGCATTGAACGA Direct Gain 0 0.947584365497861 NA NA prediction 0.895168730995722 Functional Gain - TDG ENSG00000139372 CDS Human protein_coding chr12:104378626 chr12:104378626 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_39753 0 0 1 0 2 TDG chr12:104378698 5'GT 104378698 Upstream 73bp 36589 chr1 219384885 219384885 1 + A G UCEC 219384885 + 219384865 219384905 41 AATTATTTCAGTGTCATGGTACTGCAGATGAGTTAGTTCTT AATTATTTCAGTGTCATGGTGCTGCAGATGAGTTAGTTCTT Direct Gain 0 0.947560229059295 NA NA prediction 0.89512045811859 Functional Gain - LYPLAL1 ENSG00000143353 CDS Human protein_coding chr1:219384885 chr1:219384885 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_39754 0 0 1 0 1 LYPLAL1 chr1:219384834 3'AG 219384834 Downstream 52bp 36590 chr10 112356197 112356197 1 + T G KIRC 112356197 + 112356177 112356217 41 GTGCTCTAACTGGGGGTTATTATGACACAAGGAAGTCTCGA GTGCTCTAACTGGGGGTTATGATGACACAAGGAAGTCTCGA Direct Gain 0 0.947532898648696 NA NA prediction 0.895065797297393 Functional Gain - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112356197 chr10:112356197 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39755 0 0 1 0 1 SMC3 chr10:112356156 3'AG 112356156 Downstream 42bp 36591 chr15 64449054 64449054 1 - T C HNSC 64449054 - 64449034 64449074 41 GAACTTCAAACTGAAGCACTACGGGCCTGGCTGGGTGAGCA GAACTTCAAACTGAAGCACTGCGGGCCTGGCTGGGTGAGCA Direct Gain 0 0.947531205420001 NA NA prediction 0.895062410840001 Functional Gain - PPIB ENSG00000166794 CDS Human protein_coding chr15:64449054 chr15:64449054 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_39756 0 0 1 0 1 PPIB chr15:64449108 3'AG 64449108 Downstream 55bp 36592 chr10 18250567 18250567 1 + A G LUAD 18250567 + 18250547 18250587 41 GAAATTTTGAAGATCAGCTTAGAGAAGAAGTGGTCCAGAGA GAAATTTTGAAGATCAGCTTGGAGAAGAAGTGGTCCAGAGA Direct Gain 0 0.947523904476486 NA NA prediction 0.895047808952972 Functional Gain - SLC39A12 ENSG00000148482 CDS Human protein_coding chr10:18250567 chr10:18250567 nonsynonymous SNV 0.264 0 21 hm7G_associated_SNPs_39757 0 0 0 0 1 SLC39A12 chr10:18250510 3'AG 18250510 Downstream 58bp 36593 chr6 18213914 18213914 1 + T G UCEC 18213914 + 18213894 18213934 41 TGCAATTTCCGTATAGATTTTGGGACAGTAAAGTACAAGGG TGCAATTTCCGTATAGATTTGGGGACAGTAAAGTACAAGGG Direct Gain 0 0.947516421800006 NA NA prediction 0.895032843600011 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213914 chr6:18213914 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_39758 0 0 1 0 2 KDM1B chr6:18213887 3'AG 18213887 Downstream 28bp 36594 chr6 18213914 18213914 1 + T G UCEC 18213914 + 18213894 18213934 41 TGCAATTTCCGTATAGATTTTGGGACAGTAAAGTACAAGGG TGCAATTTCCGTATAGATTTGGGGACAGTAAAGTACAAGGG Direct Gain 0 0.947516421800006 NA NA prediction 0.895032843600011 Functional Gain - KDM1B ENSG00000165097 CDS Human protein_coding chr6:18213914 chr6:18213914 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_39758 0 0 1 0 2 KDM1B chr6:18214012 5'GT 18214012 Upstream 99bp 36595 chr20 43941003 43941003 1 + C G LUAD 43941003 + 43940983 43941023 41 CAAGGTCATCTCGAAGCCCTCGCAGAAGAAGCAGTCGCTGA CAAGGTCATCTCGAAGCCCTGGCAGAAGAAGCAGTCGCTGA Direct Gain 0 0.947462462118742 NA NA prediction 0.894924924237483 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43941003 chr20:43941003 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39761 0 0 0 0 1 RBPJL chr20:43941035 5'GT 43941035 Upstream 33bp 36596 chr1 153603053 153603053 1 + A G UCEC 153603053 + 153603033 153603073 41 CATCAACGTGTTCCACGCCCACTCGGGCAAAGAGGGGGACA CATCAACGTGTTCCACGCCCGCTCGGGCAAAGAGGGGGACA Direct Gain 0 0.947391779194704 NA NA prediction 0.894783558389407 Functional Gain - S100A1 ENSG00000160678 CDS Human protein_coding chr1:153603053 chr1:153603053 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39763 0 0 1 0 2 S100A1 chr1:153602985 3'AG 153602985 Downstream 69bp 36597 chr1 153603053 153603053 1 + A G UCEC 153603053 + 153603033 153603073 41 CATCAACGTGTTCCACGCCCACTCGGGCAAAGAGGGGGACA CATCAACGTGTTCCACGCCCGCTCGGGCAAAGAGGGGGACA Direct Gain 0 0.947391779194704 NA NA prediction 0.894783558389407 Functional Gain - S100A1 ENSG00000160678 CDS Human protein_coding chr1:153603053 chr1:153603053 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39763 0 0 1 0 2 S100A1 chr1:153603138 5'GT 153603138 Upstream 86bp 36598 chr10 5494868 5494868 1 + C G LUSC 5494868 + 5494848 5494888 41 CAGGATTTAATTGAGGATCTCAAACTTGCAAGAAAGGTCAG CAGGATTTAATTGAGGATCTGAAACTTGCAAGAAAGGTCAG Direct Gain 0 0.947375482657568 NA NA prediction 0.894750965315137 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494868 chr10:5494868 synonymous SNV . 0 21 hm7G_associated_SNPs_39764 0 0 1 0 3 NET1 chr10:5494788 3'AG 5494788 Downstream 81bp 36599 chr10 5494868 5494868 1 + C G LUSC 5494868 + 5494848 5494888 41 CAGGATTTAATTGAGGATCTCAAACTTGCAAGAAAGGTCAG CAGGATTTAATTGAGGATCTGAAACTTGCAAGAAAGGTCAG Direct Gain 0 0.947375482657568 NA NA prediction 0.894750965315137 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494868 chr10:5494868 synonymous SNV . 0 21 hm7G_associated_SNPs_39764 0 0 1 0 3 NET1 chr10:5494821 3'AG 5494821 Downstream 48bp 36600 chr10 5494868 5494868 1 + C G LUSC 5494868 + 5494848 5494888 41 CAGGATTTAATTGAGGATCTCAAACTTGCAAGAAAGGTCAG CAGGATTTAATTGAGGATCTGAAACTTGCAAGAAAGGTCAG Direct Gain 0 0.947375482657568 NA NA prediction 0.894750965315137 Functional Gain - NET1 ENSG00000173848 CDS Human protein_coding chr10:5494868 chr10:5494868 synonymous SNV . 0 21 hm7G_associated_SNPs_39764 0 0 1 0 3 NET1 chr10:5494883 5'GT 5494883 Upstream 16bp 36601 chr5 68524191 68524191 1 + C G LUAD 68524191 + 68524171 68524211 41 ACAGAAGGAAACTTGTGTCTCAAGAAGAAATGGAATTTATC ACAGAAGGAAACTTGTGTCTGAAGAAGAAATGGAATTTATC Direct Gain 0 0.947346436288309 NA NA prediction 0.894692872576617 Functional Gain - MRPS36 ENSG00000134056 CDS Human protein_coding chr5:68524191 chr5:68524191 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39767 0 0 1 0 1 MRPS36 chr5:68524214 5'GT 68524214 Upstream 24bp 36602 chr3 119190219 119190219 1 + A G STAD 119190219 + 119190199 119190239 41 AGGAAGATGATGGCAGAGGTAGTCAGACGGAAGCTAGGGAC AGGAAGATGATGGCAGAGGTGGTCAGACGGAAGCTAGGGAC Direct Gain 0 0.947309182978263 NA NA prediction 0.894618365956527 Functional Gain - POGLUT1 ENSG00000163389 CDS Human protein_coding chr3:119190219 chr3:119190219 synonymous SNV . 0 21 hm7G_associated_SNPs_39768 0 0 1 0 1 POGLUT1 chr3:119190299 5'GT 119190299 Upstream 81bp 36603 chr18 47107995 47107995 1 + A G UCEC 47107995 + 47107975 47108015 41 CAAGAGGAACAGCAAAATGTACCTAAAAACCCGGGCAGGCA CAAGAGGAACAGCAAAATGTGCCTAAAAACCCGGGCAGGCA Direct Gain 0 0.947274871954214 NA NA prediction 0.894549743908429 Functional Gain - LIPG ENSG00000101670 CDS Human protein_coding chr18:47107995 chr18:47107995 nonsynonymous SNV 0.960 5 21 hm7G_associated_SNPs_39770 0 0 0 0 1 LIPG chr18:47108027 5'GT 47108027 Upstream 33bp 36604 chr11 65836163 65836163 1 + C G LUAD 65836163 + 65836143 65836183 41 AGCAAAAAAAACGGAAAGCTCAGCCCCAGGACAGCCGTGGG AGCAAAAAAAACGGAAAGCTGAGCCCCAGGACAGCCGTGGG Direct Gain 0 0.947262199425758 NA NA prediction 0.894524398851517 Functional Gain - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65836163 chr11:65836163 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39771 0 0 1 0 1 SF3B2 chr11:65836145 3'AG 65836145 Downstream 19bp 36605 chr5 52781791 52781791 1 + A G LIHC 52781791 + 52781771 52781811 41 CCCCATCTAGCCATTTCGGAAGACACCGAGGAAGAGGAGGA CCCCATCTAGCCATTTCGGAGGACACCGAGGAAGAGGAGGA Direct Gain 0 0.947211819899736 NA NA prediction 0.894423639799472 Functional Gain - FST ENSG00000134363 CDS Human protein_coding chr5:52781791 chr5:52781791 synonymous SNV . 0 21 hm7G_associated_SNPs_39773 0 0 1 0 1 FST chr5:52781781 3'AG 52781781 Downstream 11bp 36606 chr22 20109874 20109874 1 + C G BLCA 20109874 + 20109854 20109894 41 GACGTCAAGCTCCTGAAGCACAAGGAGAAAGGGGCCATCCG GACGTCAAGCTCCTGAAGCAGAAGGAGAAAGGGGCCATCCG Direct Gain 0 0.947193981689657 NA NA prediction 0.894387963379313 Functional Gain - RANBP1 ENSG00000099901 CDS Human protein_coding chr22:20109874 chr22:20109874 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39774 0 0 1 0 1 RANBP1 chr22:20109944 5'GT 20109944 Upstream 71bp 36607 chr5 1815970 1815970 1 + A G COAD 1815970 + 1815950 1815990 41 TTTGAATTTTTTCAGGACAAAGAAACAAAAACCGGCACATG TTTGAATTTTTTCAGGACAAGGAAACAAAAACCGGCACATG Direct Gain 0 0.947175971300331 NA NA prediction 0.894351942600663 Functional Gain - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1815970 chr5:1815970 synonymous SNV . 0 21 hm7G_associated_SNPs_39775 0 0 1 0 1 NDUFS6 chr5:1815965 3'AG 1815965 Downstream 6bp 36608 chr2 105654601 105654601 1 + T G GBM 105654601 + 105654581 105654621 41 GCAGTTTCGTACCGGCTTCTTCTCTGGGGTAGGGGTAGCCT GCAGTTTCGTACCGGCTTCTGCTCTGGGGTAGGGGTAGCCT Direct Gain 0 0.947144507558704 NA NA prediction 0.894289015117408 Functional Gain - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105654601 chr2:105654601 synonymous SNV . 0 21 hm7G_associated_SNPs_39777 0 0 1 0 1 MRPS9 chr2:105654685 5'GT 105654685 Upstream 85bp 36609 chr6 35745315 35745315 1 + T G UVM 35745315 + 35745295 35745335 41 CTTGGACTCCGGTGGAGCCTTCTGTGCCCCCAGGGCCAGAA CTTGGACTCCGGTGGAGCCTGCTGTGCCCCCAGGGCCAGAA Direct Gain 0 0.947140797948964 NA NA prediction 0.894281595897928 Functional Gain - CLPSL2 ENSG00000196748 CDS Human protein_coding chr6:35745315 chr6:35745315 nonsynonymous SNV 0.837 3 21 hm7G_associated_SNPs_39778 0 0 0 0 2 CLPSL2 chr6:35745236 3'AG 35745236 Downstream 80bp 36610 chr6 35745315 35745315 1 + T G UVM 35745315 + 35745295 35745335 41 CTTGGACTCCGGTGGAGCCTTCTGTGCCCCCAGGGCCAGAA CTTGGACTCCGGTGGAGCCTGCTGTGCCCCCAGGGCCAGAA Direct Gain 0 0.947140797948964 NA NA prediction 0.894281595897928 Functional Gain - CLPSL2 ENSG00000196748 CDS Human protein_coding chr6:35745315 chr6:35745315 nonsynonymous SNV 0.837 3 21 hm7G_associated_SNPs_39778 0 0 0 0 2 CLPSL2 chr6:35745358 5'GT 35745358 Upstream 44bp 36611 chr2 187370543 187370543 1 + A G BRCA 187370543 + 187370523 187370563 41 GGAAGCAGATGATACCCGCTACACCCAGGGAACAGGTGGTG GGAAGCAGATGATACCCGCTGCACCCAGGGAACAGGTGGTG Direct Gain 0 0.947138603857474 NA NA prediction 0.894277207714947 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370543 chr2:187370543 nonsynonymous SNV 0.899 2 21 hm7G_associated_SNPs_39779 0 0 1 0 2 ZC3H15 chr2:187370467 3'AG 187370467 Downstream 77bp 36612 chr2 187370543 187370543 1 + A G BRCA 187370543 + 187370523 187370563 41 GGAAGCAGATGATACCCGCTACACCCAGGGAACAGGTGGTG GGAAGCAGATGATACCCGCTGCACCCAGGGAACAGGTGGTG Direct Gain 0 0.947138603857474 NA NA prediction 0.894277207714947 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370543 chr2:187370543 nonsynonymous SNV 0.899 2 21 hm7G_associated_SNPs_39779 0 0 1 0 2 ZC3H15 chr2:187370568 5'GT 187370568 Upstream 26bp 36613 chr3 113524215 113524215 1 + A G LUSC 113524215 + 113524195 113524235 41 TTCTAGGTTCTGCCCATTCTACAAGACAGTAGGGATGCTGT TTCTAGGTTCTGCCCATTCTGCAAGACAGTAGGGATGCTGT Direct Gain 0 0.947100443209104 NA NA prediction 0.894200886418208 Functional Gain - ATP6V1A ENSG00000114573 CDS Human protein_coding chr3:113524215 chr3:113524215 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39781 0 0 1 0 1 ATP6V1A chr3:113524201 3'AG 113524201 Downstream 15bp 36614 chr3 119219573 119219573 1 + A G rs11539377 119219573 + 119219553 119219593 41 GAATTTCAAAGGACCTTGCTAATATCTGTAAGACGGCAGCT GAATTTCAAAGGACCTTGCTGATATCTGTAAGACGGCAGCT Direct Gain 0 0.947077317742526 NA NA prediction 0.894154635485052 Functional Gain - TIMMDC1 ENSG00000113845 CDS Human protein_coding chr3:119219573 chr3:119219573 nonsynonymous SNV 0.002 0 21 hm7G_associated_SNPs_39782 0 0 1 1 1 TIMMDC1 chr3:119219542 3'AG 119219542 Downstream 32bp 36615 chr3 148712058 148712058 1 + C G rs142784073 148712058 + 148712038 148712078 41 CACCCCTCAGGTCTCAGACTCCATGAGGTGAGGACCTCGCT CACCCCTCAGGTCTCAGACTGCATGAGGTGAGGACCTCGCT Direct Gain 0 0.94707264617393 NA NA prediction 0.89414529234786 Functional Gain - GYG1 ENSG00000163754 CDS Human protein_coding chr3:148712058 chr3:148712058 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39783 1 0 1 0 1 GYG1 chr3:148712064 5'GT 148712064 Upstream 7bp 36616 chr8 66620087 66620087 1 + A G SKCM 66620087 + 66620067 66620107 41 ACTTCTCTAAGGTCAGAGCAAGATGTGAAGCCCAAGCCAGT ACTTCTCTAAGGTCAGAGCAGGATGTGAAGCCCAAGCCAGT Direct Gain 0 0.947024568531373 NA NA prediction 0.894049137062746 Functional Gain - MTFR1 ENSG00000066855 CDS Human protein_coding chr8:66620087 chr8:66620087 synonymous SNV . 0 21 hm7G_associated_SNPs_39785 0 0 1 0 1 MTFR1 chr8:66620078 3'AG 66620078 Downstream 10bp 36617 chr11 63971056 63971056 1 + C G LUSC 63971056 + 63971036 63971076 41 GACCCAGCCATGCGCCTTATCCTGGAACAGATGCAGAAGGA GACCCAGCCATGCGCCTTATGCTGGAACAGATGCAGAAGGA Direct Gain 0 0.947011989480007 NA NA prediction 0.894023978960014 Functional Gain - STIP1 ENSG00000168439 CDS Human protein_coding chr11:63971056 chr11:63971056 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_39786 0 0 1 0 1 STIP1 chr11:63971094 5'GT 63971094 Upstream 39bp 36618 chr12 8196680 8196680 1 + A G COAD 8196680 + 8196660 8196700 41 CCCCACATCTATAGCCAGCTACAGCCAGGTAGGAAGCAGAT CCCCACATCTATAGCCAGCTGCAGCCAGGTAGGAAGCAGAT Direct Gain 0 0.94698914383869 NA NA prediction 0.89397828767738 Functional Gain - FOXJ2 ENSG00000065970 CDS Human protein_coding chr12:8196680 chr12:8196680 nonsynonymous SNV 0.626 3 21 hm7G_associated_SNPs_39787 0 0 1 0 1 FOXJ2 chr12:8196687 5'GT 8196687 Upstream 8bp 36619 chr7 106797673 106797673 1 + C G BLCA 106797673 + 106797653 106797693 41 ATGGTGCAGTAGAAATCGCTCGATGCTCGCGGGGACAGTAC ATGGTGCAGTAGAAATCGCTGGATGCTCGCGGGGACAGTAC Direct Gain 0 0.946985085342702 NA NA prediction 0.893970170685404 Functional Gain - PRKAR2B ENSG00000005249 CDS Human protein_coding chr7:106797673 chr7:106797673 nonsynonymous SNV 0.944 3 21 hm7G_associated_SNPs_39788 0 0 1 0 1 PRKAR2B chr7:106797769 5'GT 106797769 Upstream 97bp 36620 chr11 65123348 65123348 1 + C G LUAD 65123348 + 65123328 65123368 41 AAGATCCAGGTGCTGGAACTCCTGGATGAGTCCAAGATGTC AAGATCCAGGTGCTGGAACTGCTGGATGAGTCCAAGATGTC Direct Gain 0 0.946963802990018 NA NA prediction 0.893927605980037 Functional Gain - TIGD3 ENSG00000173825 CDS Human protein_coding chr11:65123348 chr11:65123348 synonymous SNV . 0 21 hm7G_associated_SNPs_39789 0 0 0 0 1 TIGD3 chr11:65123264 3'AG 65123264 Downstream 85bp 36621 chr1 36762241 36762241 1 + A G LUAD 36762241 + 36762221 36762261 41 GCCTTGATATTGAACGTCGTAAAAAACATAAGGAGAGAGAT GCCTTGATATTGAACGTCGTGAAAAACATAAGGAGAGAGAT Direct Gain 0 0.946961664230519 NA NA prediction 0.893923328461037 Functional Gain - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36762241 chr1:36762241 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39790 0 0 1 0 1 THRAP3 chr1:36762184 3'AG 36762184 Downstream 58bp 36622 chr6 143772176 143772176 1 + A G rs116692495 143772176 + 143772156 143772196 41 AGCCCACACCCCTAGGGCCTAAAGATGCTGAGGTCTGTATG AGCCCACACCCCTAGGGCCTGAAGATGCTGAGGTCTGTATG Direct Gain 0 0.946944165808691 NA NA prediction 0.893888331617382 Functional Gain - PEX3 ENSG00000034693 UTR5 Human protein_coding chr6:143772176 chr6:143772176 . . 0 21 hm7G_associated_SNPs_39791 2 0 1 0 1 PEX3 chr6:143772252 5'GT 143772252 Upstream 77bp 36623 chr11 20676310 20676310 1 + C G BLCA 20676310 + 20676290 20676330 41 ACTGGGGCCCATTCTTAGCTCAACACCGCGGGGAGCGTTAC ACTGGGGCCCATTCTTAGCTGAACACCGCGGGGAGCGTTAC Direct Gain 0 0.946942207302844 NA NA prediction 0.893884414605688 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20676310 chr11:20676310 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_39792 0 0 0 0 1 SLC6A5 chr11:20676259 3'AG 20676259 Downstream 52bp 36624 chr5 68498782 68498782 1 + A G LUSC 68498782 + 68498762 68498802 41 AGGAAAAACTGCTTGATATTAGAAAGAAGAGATTGCGTATG AGGAAAAACTGCTTGATATTGGAAAGAAGAGATTGCGTATG Direct Gain 0 0.946891806708689 NA NA prediction 0.893783613417378 Functional Gain - CENPH ENSG00000153044 CDS Human protein_coding chr5:68498782 chr5:68498782 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39793 0 0 1 0 2 CENPH chr5:68498746 3'AG 68498746 Downstream 37bp 36625 chr5 68498782 68498782 1 + A G LUSC 68498782 + 68498762 68498802 41 AGGAAAAACTGCTTGATATTAGAAAGAAGAGATTGCGTATG AGGAAAAACTGCTTGATATTGGAAAGAAGAGATTGCGTATG Direct Gain 0 0.946891806708689 NA NA prediction 0.893783613417378 Functional Gain - CENPH ENSG00000153044 CDS Human protein_coding chr5:68498782 chr5:68498782 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39793 0 0 1 0 2 CENPH chr5:68498797 5'GT 68498797 Upstream 16bp 36626 chr3 129251462 129251462 1 + C G HNSC 129251462 + 129251442 129251482 41 ATCATCATGGTCATCGCTTTCCTGATCTGCTGGGTGCCCTA ATCATCATGGTCATCGCTTTGCTGATCTGCTGGGTGCCCTA Direct Gain 0 0.946861883723268 NA NA prediction 0.893723767446535 Functional Gain - RHO ENSG00000163914 CDS Human protein_coding chr3:129251462 chr3:129251462 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_39795 0 0 0 0 1 RHO chr3:129251376 3'AG 129251376 Downstream 87bp 36627 chr2 218954716 218954716 1 + A G rs116710266 218954716 + 218954696 218954736 41 CCATGCTTGCTCCATGGATTACAAGAAGAGAGACCGCTGCT CCATGCTTGCTCCATGGATTGCAAGAAGAGAGACCGCTGCT Direct Gain 0 0.946757115445883 NA NA prediction 0.893514230891767 Functional Gain - RUFY4 ENSG00000188282 CDS Human protein_coding chr2:218954716 chr2:218954716 nonsynonymous SNV 0.492 1 21 hm7G_associated_SNPs_39798 0 0 0 0 1 RUFY4 chr2:218954675 3'AG 218954675 Downstream 42bp 36628 chr22 42049691 42049691 1 + C G LUSC 42049691 + 42049671 42049711 41 AGAAAATTCAGGTGACTCCTCCAGGTATGTGGCAGAGATAT AGAAAATTCAGGTGACTCCTGCAGGTATGTGGCAGAGATAT Direct Gain 0 0.946744521496931 NA NA prediction 0.893489042993862 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42049691 chr22:42049691 nonsynonymous SNV 0.850 0 21 hm7G_associated_SNPs_39799 0 0 1 0 1 XRCC6 chr22:42049694 5'GT 42049694 Upstream 4bp 36629 chr5 1244447 1244447 1 + T G COAD 1244447 + 1244427 1244467 41 AACCTGCTCATGTTGGCCTTTCTCGAGGTTGTGGGTGTCGT AACCTGCTCATGTTGGCCTTGCTCGAGGTTGTGGGTGTCGT Direct Gain 0 0.946634538258337 NA NA prediction 0.893269076516674 Functional Gain - SLC6A18 ENSG00000164363 CDS Human protein_coding chr5:1244447 chr5:1244447 nonsynonymous SNV 0.068 0 21 hm7G_associated_SNPs_39800 0 0 0 0 1 SLC6A18 chr5:1244488 5'GT 1244488 Upstream 42bp 36630 chr12 104341414 104341414 1 + T G UCEC 104341414 + 104341394 104341434 41 TTTTTATTTATTTACAGGAATCTACAGCTGAAAAAGATGAA TTTTTATTTATTTACAGGAAGCTACAGCTGAAAAAGATGAA Direct Gain 0 0.946582498801707 NA NA prediction 0.893164997603414 Functional Gain - HSP90B1 ENSG00000166598 CDS Human protein_coding chr12:104341414 chr12:104341414 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_39803 0 0 1 0 1 HSP90B1 chr12:104341411 3'AG 104341411 Downstream 4bp 36631 chr4 78870998 78870998 1 + T G UCEC 78870998 + 78870978 78871018 41 GCCAATCTGCAAGCAGTTATTAATGAAGTTTGTAGGCACAG GCCAATCTGCAAGCAGTTATGAATGAAGTTTGTAGGCACAG Direct Gain 0 0.946582470801198 NA NA prediction 0.893164941602396 Functional Gain - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78870998 chr4:78870998 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_39804 0 0 0 0 2 MRPL1 chr4:78870951 3'AG 78870951 Downstream 48bp 36632 chr4 78870998 78870998 1 + T G UCEC 78870998 + 78870978 78871018 41 GCCAATCTGCAAGCAGTTATTAATGAAGTTTGTAGGCACAG GCCAATCTGCAAGCAGTTATGAATGAAGTTTGTAGGCACAG Direct Gain 0 0.946582470801198 NA NA prediction 0.893164941602396 Functional Gain - MRPL1 ENSG00000169288 CDS Human protein_coding chr4:78870998 chr4:78870998 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_39804 0 0 0 0 2 MRPL1 chr4:78871032 5'GT 78871032 Upstream 35bp 36633 chr11 1862404 1862404 1 + C G STAD 1862404 + 1862384 1862424 41 TGCATGGACCTGAGGGCCAACCTGAAGCAGGTCAAGAAGGA TGCATGGACCTGAGGGCCAAGCTGAAGCAGGTCAAGAAGGA Direct Gain 0 0.946567421255955 NA NA prediction 0.893134842511911 Functional Gain - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862404 chr11:1862404 nonsynonymous SNV 0.993 5 21 hm7G_associated_SNPs_39805 0 0 0 0 1 TNNI2 chr11:1862437 5'GT 1862437 Upstream 34bp 36634 chrX 69385717 69385717 1 + A G STAD 69385717 + 69385697 69385737 41 GCAGCTCAGCAACAGGAAGAACAAGAAGAAAAGGAGGAAGA GCAGCTCAGCAACAGGAAGAGCAAGAAGAAAAGGAGGAAGA Direct Gain 0 0.946519523192151 NA NA prediction 0.893039046384302 Functional Gain - IGBP1 ENSG00000089289 CDS Human protein_coding chrX:69385717 chrX:69385717 synonymous SNV . 0 21 hm7G_associated_SNPs_39808 0 0 1 0 1 IGBP1 chrX:69385683 3'AG 69385683 Downstream 35bp 36635 chr8 79609675 79609675 1 + C G BLCA 79609675 + 79609655 79609695 41 CACTTAAAAAGTCAAATTCTCCTGGAACTGCATCATCAGGA CACTTAAAAAGTCAAATTCTGCTGGAACTGCATCATCAGGA Direct Gain 0 0.946510722382361 NA NA prediction 0.893021444764721 Functional Gain - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79609675 chr8:79609675 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39809 0 0 1 0 2 ZC2HC1A chr8:79609642 3'AG 79609642 Downstream 34bp 36636 chr8 79609675 79609675 1 + C G BLCA 79609675 + 79609655 79609695 41 CACTTAAAAAGTCAAATTCTCCTGGAACTGCATCATCAGGA CACTTAAAAAGTCAAATTCTGCTGGAACTGCATCATCAGGA Direct Gain 0 0.946510722382361 NA NA prediction 0.893021444764721 Functional Gain - ZC2HC1A ENSG00000104427 CDS Human protein_coding chr8:79609675 chr8:79609675 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39809 0 0 1 0 2 ZC2HC1A chr8:79609741 5'GT 79609741 Upstream 67bp 36637 chr4 190878603 190878603 1 + A G LUSC 190878603 + 190878583 190878623 41 TGCTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAA TGCTTTATTAGATGCAATGAGGCAGGGGACATAGAAGCAAA Direct Gain 0 0.946480220887842 NA NA prediction 0.892960441775684 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878603 chr4:190878603 synonymous SNV . 0 21 hm7G_associated_SNPs_39810 0 0 0 0 2 FRG1 chr4:190878553 3'AG 190878553 Downstream 51bp 36638 chr4 190878603 190878603 1 + A G LUSC 190878603 + 190878583 190878623 41 TGCTTTATTAGATGCAATGAAGCAGGGGACATAGAAGCAAA TGCTTTATTAGATGCAATGAGGCAGGGGACATAGAAGCAAA Direct Gain 0 0.946480220887842 NA NA prediction 0.892960441775684 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878603 chr4:190878603 synonymous SNV . 0 21 hm7G_associated_SNPs_39810 0 0 0 0 2 FRG1 chr4:190878657 5'GT 190878657 Upstream 55bp 36639 chr10 43659363 43659363 1 + A G KIRC 43659363 + 43659343 43659383 41 TCTCATTGAATGAAGAATTTAATCGTGGACGAGGACTAAAT TCTCATTGAATGAAGAATTTGATCGTGGACGAGGACTAAAT Direct Gain 0 0.946465327254099 NA NA prediction 0.892930654508198 Functional Gain - CSGALNACT2 ENSG00000169826 CDS Human protein_coding chr10:43659363 chr10:43659363 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39812 0 0 1 0 1 CSGALNACT2 chr10:43659314 3'AG 43659314 Downstream 50bp 36640 chr21 37711173 37711173 1 + A G LUAD 37711173 + 37711153 37711193 41 TACTGGCAGAACTTGATGCTATTATAGGCAAGAAGGGGACG TACTGGCAGAACTTGATGCTGTTATAGGCAAGAAGGGGACG Direct Gain 0 0.946458909048987 NA NA prediction 0.892917818097973 Functional Gain - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37711173 chr21:37711173 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39814 0 0 1 0 1 MORC3 chr21:37711219 5'GT 37711219 Upstream 47bp 36641 chr2 187370247 187370247 1 + A G COAD 187370247 + 187370227 187370267 41 TTGCCTGGAAGAAAAGGAAAAGACAAGAAAAGATTGATAAA TTGCCTGGAAGAAAAGGAAAGGACAAGAAAAGATTGATAAA Direct Gain 0 0.946446348978124 NA NA prediction 0.892892697956249 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187370247 chr2:187370247 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39816 0 0 1 0 1 ZC3H15 chr2:187370324 5'GT 187370324 Upstream 78bp 36642 chr22 30771580 30771580 1 + A G SKCM 30771580 + 30771560 30771600 41 GACATCCGCATCCGGGTCCTACAGGAGGAGAACGGGCGGCT GACATCCGCATCCGGGTCCTGCAGGAGGAGAACGGGCGGCT Direct Gain 0 0.946402694243726 NA NA prediction 0.892805388487453 Functional Gain - CCDC157 ENSG00000187860 CDS Human protein_coding chr22:30771580 chr22:30771580 synonymous SNV . 0 21 hm7G_associated_SNPs_39817 0 0 0 0 1 CCDC157 chr22:30771652 5'GT 30771652 Upstream 73bp 36643 chr1 53547800 53547800 1 + A G rs6687909 53547800 + 53547780 53547820 41 AAGGAAAAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGA AAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGA Direct Gain 0 0.94624378858241 NA NA prediction 0.89248757716482 Functional Gain - PODN ENSG00000174348 CDS Human antisense chr1:53547800 chr1:53547800 synonymous SNV . 0 21 hm7G_associated_SNPs_39822 0 0 0 0 1 PODN chr1:53547860 5'GT 53547860 Upstream 61bp 36644 chr14 90730131 90730131 1 + T G UCEC 90730131 + 90730111 90730151 41 TCAGAACACTACGTCAGCATTCTTTCATTTGTAGACAAGGA TCAGAACACTACGTCAGCATGCTTTCATTTGTAGACAAGGA Direct Gain 0 0.946182405995547 NA NA prediction 0.892364811991094 Functional Gain - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90730131 chr14:90730131 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_39823 0 0 0 0 1 PSMC1 chr14:90730191 5'GT 90730191 Upstream 61bp 36645 chr3 190127737 190127737 1 + A G rs35041121 190127737 + 190127717 190127757 41 TTATTCCTTGAGGAAAGCCTATTCAGCCGCGGGTGTTTCCA TTATTCCTTGAGGAAAGCCTGTTCAGCCGCGGGTGTTTCCA Direct Gain 0 0.946171767825943 NA NA prediction 0.892343535651886 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190127737 chr3:190127737 nonsynonymous SNV 0.789 5 21 hm7G_associated_SNPs_39824 1 0 0 1 1 CLDN16 chr3:190127692 3'AG 190127692 Downstream 46bp 36646 chr12 56504248 56504248 1 + C G CESC 56504248 + 56504228 56504268 41 TGTGGATGTTCTCGTCAGCTCAGGAGAGGGCAAGGTGAGGA TGTGGATGTTCTCGTCAGCTGAGGAGAGGGCAAGGTGAGGA Direct Gain 0 0.946158388945308 NA NA prediction 0.892316777890616 Functional Gain - PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504248 chr12:56504248 stopgain 1.000 1 21 hm7G_associated_SNPs_39825 0 0 1 0 2 PA2G4 chr12:56504183 3'AG 56504183 Downstream 66bp 36647 chr12 56504248 56504248 1 + C G CESC 56504248 + 56504228 56504268 41 TGTGGATGTTCTCGTCAGCTCAGGAGAGGGCAAGGTGAGGA TGTGGATGTTCTCGTCAGCTGAGGAGAGGGCAAGGTGAGGA Direct Gain 0 0.946158388945308 NA NA prediction 0.892316777890616 Functional Gain - PA2G4 ENSG00000170515 CDS Human protein_coding chr12:56504248 chr12:56504248 stopgain 1.000 1 21 hm7G_associated_SNPs_39825 0 0 1 0 2 PA2G4 chr12:56504261 5'GT 56504261 Upstream 14bp 36648 chr11 113815368 113815368 1 + C G GBM 113815368 + 113815348 113815388 41 ATCGTGTTGGTCAAATTCCTCCATGATGAGCAGCGTGGTGG ATCGTGTTGGTCAAATTCCTGCATGATGAGCAGCGTGGTGG Direct Gain 0 0.94610682226624 NA NA prediction 0.892213644532479 Functional Gain - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113815368 chr11:113815368 synonymous SNV . 0 21 hm7G_associated_SNPs_39827 0 0 0 0 1 HTR3B chr11:113815295 3'AG 113815295 Downstream 74bp 36649 chr12 130840123 130840123 1 + C G OV 130840123 + 130840103 130840143 41 ATAATGTTCAAAGGGAGCTTCGAGACTGGGGTTTGAGCTTT ATAATGTTCAAAGGGAGCTTGGAGACTGGGGTTTGAGCTTT Direct Gain 0 0.946099530051197 NA NA prediction 0.892199060102395 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130840123 chr12:130840123 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_39828 0 0 0 0 2 PIWIL1 chr12:130840098 3'AG 130840098 Downstream 26bp 36650 chr12 130840123 130840123 1 + C G OV 130840123 + 130840103 130840143 41 ATAATGTTCAAAGGGAGCTTCGAGACTGGGGTTTGAGCTTT ATAATGTTCAAAGGGAGCTTGGAGACTGGGGTTTGAGCTTT Direct Gain 0 0.946099530051197 NA NA prediction 0.892199060102395 Functional Gain - PIWIL1 ENSG00000125207 CDS Human protein_coding chr12:130840123 chr12:130840123 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_39828 0 0 0 0 2 PIWIL1 chr12:130840212 5'GT 130840212 Upstream 90bp 36651 chr13 34410327 34410327 1 + A G rs3135633 34410327 + 34410307 34410347 41 GCTTACTATGAGCATCGTCTACAGCTGGGTAGCAAAGCCAT GCTTACTATGAGCATCGTCTGCAGCTGGGTAGCAAAGCCAT Direct Gain 0 0.946072787113164 NA NA prediction 0.892145574226329 Functional Gain - RFC3 ENSG00000133119 CDS Human protein_coding chr13:34410327 chr13:34410327 synonymous SNV . 0 21 hm7G_associated_SNPs_39829 0 0 1 0 1 RFC3 chr13:34410241 3'AG 34410241 Downstream 87bp 36652 chr17 73106666 73106666 1 + C G LUSC 73106666 + 73106646 73106686 41 TTTATTTCTCGATTCGCTGTCGGAGGAGAATGAGACCCTGG TTTATTTCTCGATTCGCTGTGGGAGGAGAATGAGACCCTGG Direct Gain 0 0.946059225049597 NA NA prediction 0.892118450099193 Functional Gain - ARMC7 ENSG00000125449 CDS Human protein_coding chr17:73106666 chr17:73106666 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39831 0 0 1 0 1 ARMC7 chr17:73106701 5'GT 73106701 Upstream 36bp 36653 chr17 34136487 34136487 1 + C G rs562695145 34136487 + 34136467 34136507 41 TCAGCCCGCCGCGCCGCCCTCAGTACAGCTCCGGCCGCCGC TCAGCCCGCCGCGCCGCCCTGAGTACAGCTCCGGCCGCCGC Direct Gain 0 0.946057014004061 NA NA prediction 0.892114028008121 Functional Gain - TAF15 ENSG00000172660 UTR5 Human other chr17:34136487 chr17:34136487 . . 0 21 hm7G_associated_SNPs_39832 0 0 1 0 1 TAF15 chr17:34136580 5'GT 34136580 Upstream 94bp 36654 chr1 169347681 169347681 1 + A G UCEC 169347681 + 169347661 169347701 41 ATTTTAGAAAATGAAGCCCTAGGTCGAAACACAGCTCAGCT ATTTTAGAAAATGAAGCCCTGGGTCGAAACACAGCTCAGCT Direct Gain 0 0.946056156449503 NA NA prediction 0.892112312899006 Functional Gain - BLZF1 ENSG00000117475 CDS Human protein_coding chr1:169347681 chr1:169347681 synonymous SNV . 0 21 hm7G_associated_SNPs_39833 0 0 1 0 1 BLZF1 chr1:169347767 5'GT 169347767 Upstream 87bp 36655 chr1 150315820 150315820 1 + C G KIRC 150315820 + 150315800 150315840 41 CAGTTACTCTGGGAGTATATCTTACCAAGAAGGAACAGAAA CAGTTACTCTGGGAGTATATGTTACCAAGAAGGAACAGAAA Direct Gain 0 0.946033108811794 NA NA prediction 0.892066217623589 Functional Gain - PRPF3 ENSG00000117360 CDS Human protein_coding chr1:150315820 chr1:150315820 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_39834 0 0 1 0 1 PRPF3 chr1:150315785 3'AG 150315785 Downstream 36bp 36656 chr17 46928947 46928947 1 + C G CESC 46928947 + 46928927 46928967 41 AGAACAAAACCAGAAGATGTCCTCAGAAAATGAGAAGATGG AGAACAAAACCAGAAGATGTGCTCAGAAAATGAGAAGATGG Direct Gain 0 0.945924474055401 NA NA prediction 0.891848948110802 Functional Gain - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46928947 chr17:46928947 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_39836 0 0 1 0 2 CALCOCO2 chr17:46928921 3'AG 46928921 Downstream 27bp 36657 chr17 46928947 46928947 1 + C G CESC 46928947 + 46928927 46928967 41 AGAACAAAACCAGAAGATGTCCTCAGAAAATGAGAAGATGG AGAACAAAACCAGAAGATGTGCTCAGAAAATGAGAAGATGG Direct Gain 0 0.945924474055401 NA NA prediction 0.891848948110802 Functional Gain - CALCOCO2 ENSG00000136436 CDS Human protein_coding chr17:46928947 chr17:46928947 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_39836 0 0 1 0 2 CALCOCO2 chr17:46928990 5'GT 46928990 Upstream 44bp 36658 chr1 196963273 196963273 1 + A G PRAD 196963273 + 196963253 196963293 41 TCAGCCAAAAAAAGAAAGCTACAAAGTTGGAGACGTGTTGA TCAGCCAAAAAAAGAAAGCTGCAAAGTTGGAGACGTGTTGA Direct Gain 0 0.945915096879055 NA NA prediction 0.891830193758109 Functional Gain - CFHR5 ENSG00000134389 CDS Human protein_coding chr1:196963273 chr1:196963273 nonsynonymous SNV 0.002 3 21 hm7G_associated_SNPs_39837 0 0 0 0 1 CFHR5 chr1:196963210 3'AG 196963210 Downstream 64bp 36659 chr11 118944567 118944567 1 + C G HNSC 118944567 + 118944547 118944587 41 ACCTTGCCAAGAGCCAGCATCTGGACAGTGATGGGCTGGCC ACCTTGCCAAGAGCCAGCATGTGGACAGTGATGGGCTGGCC Direct Gain 0 0.945903821831632 NA NA prediction 0.891807643663263 Functional Gain - VPS11 ENSG00000160695 CDS Human protein_coding chr11:118944567 chr11:118944567 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_39838 0 0 1 0 2 VPS11 chr11:118944510 3'AG 118944510 Downstream 58bp 36660 chr11 118944567 118944567 1 + C G HNSC 118944567 + 118944547 118944587 41 ACCTTGCCAAGAGCCAGCATCTGGACAGTGATGGGCTGGCC ACCTTGCCAAGAGCCAGCATGTGGACAGTGATGGGCTGGCC Direct Gain 0 0.945903821831632 NA NA prediction 0.891807643663263 Functional Gain - VPS11 ENSG00000160695 CDS Human protein_coding chr11:118944567 chr11:118944567 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_39838 0 0 1 0 2 VPS11 chr11:118944661 5'GT 118944661 Upstream 95bp 36661 chr14 77845400 77845400 1 + C G LUSC 77845400 + 77845380 77845420 41 TTGAGCATCTTAATTGGGATCCAGAGGAAGTTGCAGAGTGG TTGAGCATCTTAATTGGGATGCAGAGGAAGTTGCAGAGTGG Direct Gain 0 0.945890321476102 NA NA prediction 0.891780642952203 Functional Gain - SAMD15 ENSG00000100583 CDS Human protein_coding chr14:77845400 chr14:77845400 nonsynonymous SNV 0.705 2 21 hm7G_associated_SNPs_39839 0 0 1 0 1 SAMD15 chr14:77845450 5'GT 77845450 Upstream 51bp 36662 chr12 54675636 54675636 1 + A G BLCA 54675636 + 54675616 54675656 41 TTGGGTTTGTCACATATGCCACTGTGGAGGAGGTGGATGCA TTGGGTTTGTCACATATGCCGCTGTGGAGGAGGTGGATGCA Direct Gain 0 0.945871907708554 NA NA prediction 0.891743815417109 Functional Gain - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675636 chr12:54675636 nonsynonymous SNV 0.972 0 21 hm7G_associated_SNPs_39840 0 0 0 1 1 HNRNPA1 chr12:54675725 5'GT 54675725 Upstream 90bp 36663 chr6 150713566 150713566 1 + C G BLCA 150713566 + 150713546 150713586 41 AAGCACAAGATTCGAAAGATCATTGAGGAGGAAGAGGAGAT AAGCACAAGATTCGAAAGATGATTGAGGAGGAAGAGGAGAT Direct Gain 0 0.945866355850722 NA NA prediction 0.891732711701444 Functional Gain - IYD ENSG00000009765 CDS Human protein_coding chr6:150713566 chr6:150713566 nonsynonymous SNV 0.757 4 21 hm7G_associated_SNPs_39841 0 0 0 0 2 IYD chr6:150713481 3'AG 150713481 Downstream 86bp 36664 chr6 150713566 150713566 1 + C G BLCA 150713566 + 150713546 150713586 41 AAGCACAAGATTCGAAAGATCATTGAGGAGGAAGAGGAGAT AAGCACAAGATTCGAAAGATGATTGAGGAGGAAGAGGAGAT Direct Gain 0 0.945866355850722 NA NA prediction 0.891732711701444 Functional Gain - IYD ENSG00000009765 CDS Human protein_coding chr6:150713566 chr6:150713566 nonsynonymous SNV 0.757 4 21 hm7G_associated_SNPs_39841 0 0 0 0 2 IYD chr6:150713640 5'GT 150713640 Upstream 75bp 36665 chr1 9009398 9009398 1 + A G LUAD 9009398 + 9009378 9009418 41 AGACAGTCGCCTATCAACCTACAGAGGACGAAGGTGCGGTA AGACAGTCGCCTATCAACCTGCAGAGGACGAAGGTGCGGTA Direct Gain 0 0.945859164344666 NA NA prediction 0.891718328689333 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9009398 chr1:9009398 synonymous SNV . 0 21 hm7G_associated_SNPs_39842 0 0 0 0 1 CA6 chr1:9009322 3'AG 9009322 Downstream 77bp 36666 chr19 4950984 4950984 1 + C G CESC 4950984 + 4950964 4951004 41 AAGGAGGGGAAGGACCGGATCAAGAAGCTGGGGCTGACCAT AAGGAGGGGAAGGACCGGATGAAGAAGCTGGGGCTGACCAT Direct Gain 0 0.945841592600652 NA NA prediction 0.891683185201304 Functional Gain - UHRF1 ENSG00000034063 ncRNA_exonic Human other chr19:4950984 chr19:4950984 . 0.324 0 21 hm7G_associated_SNPs_39843 0 0 1 0 1 UHRF1 chr19:4951008 5'GT 4951008 Upstream 25bp 36667 chr10 70694630 70694630 1 + C G ESCA 70694630 + 70694610 70694650 41 GGATTTGTATATGTTTTTATCAACCAAGAGAAAGAGGTCAA GGATTTGTATATGTTTTTATGAACCAAGAGAAAGAGGTCAA Direct Gain 0 0.945838740124413 NA NA prediction 0.891677480248827 Functional Gain - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70694630 chr10:70694630 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39844 0 0 1 0 2 DDX50 chr10:70694555 3'AG 70694555 Downstream 76bp 36668 chr10 70694630 70694630 1 + C G ESCA 70694630 + 70694610 70694650 41 GGATTTGTATATGTTTTTATCAACCAAGAGAAAGAGGTCAA GGATTTGTATATGTTTTTATGAACCAAGAGAAAGAGGTCAA Direct Gain 0 0.945838740124413 NA NA prediction 0.891677480248827 Functional Gain - DDX50 ENSG00000107625 CDS Human protein_coding chr10:70694630 chr10:70694630 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39844 0 0 1 0 2 DDX50 chr10:70694674 5'GT 70694674 Upstream 45bp 36669 chr8 400077 400077 1 + C G CESC 400077 + 400057 400097 41 ACATTTTGGATAAAATCGTTCAAAAGGGTAAGATGATCACT ACATTTTGGATAAAATCGTTGAAAAGGGTAAGATGATCACT Direct Gain 0 0.945696479768288 NA NA prediction 0.891392959536575 Functional Gain - FBXO25 ENSG00000147364 CDS Human protein_coding chr8:400077 chr8:400077 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_39847 0 0 0 0 1 FBXO25 chr8:399990 3'AG 399990 Downstream 88bp 36670 chr16 23700856 23700856 1 + C G OV 23700856 + 23700836 23700876 41 CGCAATTACATGAGCGAGCACTTGCTGAAGGCAGGTGCCAA CGCAATTACATGAGCGAGCAGTTGCTGAAGGCAGGTGCCAA Direct Gain 0 0.945680265933909 NA NA prediction 0.891360531867818 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700856 chr16:23700856 nonsynonymous SNV 0.965 4 21 hm7G_associated_SNPs_39848 0 0 1 0 1 PLK1 chr16:23700815 3'AG 23700815 Downstream 42bp 36671 chr11 75509329 75509329 1 + C G SKCM 75509329 + 75509309 75509349 41 GAAGTGTACAAGCAGGTGATCTTCGAGGAGGGCTCCTGGGG GAAGTGTACAAGCAGGTGATGTTCGAGGAGGGCTCCTGGGG Direct Gain 0 0.945678359598929 NA NA prediction 0.891356719197859 Functional Gain - DGAT2 ENSG00000062282 CDS Human protein_coding chr11:75509329 chr11:75509329 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39849 0 0 1 0 1 DGAT2 chr11:75509272 3'AG 75509272 Downstream 58bp 36672 chr14 67787776 67787776 1 + A G HNSC 67787776 + 67787756 67787796 41 CTGATTTTGTTTGCCTAGATACAACCCGGAGTAGGCGAGAC CTGATTTTGTTTGCCTAGATGCAACCCGGAGTAGGCGAGAC Direct Gain 0 0.945652907311267 NA NA prediction 0.891305814622534 Functional Gain - MPP5 ENSG00000072415 CDS Human protein_coding chr14:67787776 chr14:67787776 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39851 0 0 1 0 1 MPP5 chr14:67787774 3'AG 67787774 Downstream 3bp 36673 chr11 65562616 65562616 1 + A G UCEC 65562616 + 65562596 65562636 41 CCATGGTGTGCAGCAGAAGTACGCGTACAAGGAGCGGCGGG CCATGGTGTGCAGCAGAAGTGCGCGTACAAGGAGCGGCGGG Direct Gain 0 0.94564624879066 NA NA prediction 0.89129249758132 Functional Gain - OVOL1 ENSG00000172818 CDS Human protein_coding chr11:65562616 chr11:65562616 nonsynonymous SNV 0.658 4 21 hm7G_associated_SNPs_39852 0 0 0 0 1 OVOL1 chr11:65562517 3'AG 65562517 Downstream 100bp 36674 chr1 171236728 171236728 1 + C G LUSC 171236728 + 171236708 171236748 41 TCTCTACAAGTCTGTGGTTTCCAACAGCTGCAAGGAGATGT TCTCTACAAGTCTGTGGTTTGCAACAGCTGCAAGGAGATGT Direct Gain 0 0.945559151722305 NA NA prediction 0.891118303444609 Functional Gain - FMO1 ENSG00000010932 CDS Human protein_coding chr1:171236728 chr1:171236728 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39856 0 0 0 0 1 FMO1 chr1:171236682 3'AG 171236682 Downstream 47bp 36675 chr1 87031563 87031563 1 + A G UCEC 87031563 + 87031543 87031583 41 TAAAGTGCAATTTTAGAAGTACATGGGAGGTGATTAGCAAT TAAAGTGCAATTTTAGAAGTGCATGGGAGGTGATTAGCAAT Direct Gain 0 0.945543929641048 NA NA prediction 0.891087859282097 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87031563 chr1:87031563 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_39858 0 0 0 0 1 CLCA4 chr1:87031485 3'AG 87031485 Downstream 79bp 36676 chr11 118849720 118849720 1 + C G rs45602538 118849720 + 118849700 118849740 41 TAAATCCCAACATTGTGTATCCCCCTGGAAAGCTGGAGGTC TAAATCCCAACATTGTGTATGCCCCTGGAAAGCTGGAGGTC Direct Gain 0 0.945526077086567 NA NA prediction 0.891052154173134 Functional Gain - FOXR1 ENSG00000176302 CDS Human protein_coding chr11:118849720 chr11:118849720 nonsynonymous SNV 0.852 4 21 hm7G_associated_SNPs_39860 0 0 0 0 1 FOXR1 chr11:118849667 3'AG 118849667 Downstream 54bp 36677 chr7 128399863 128399863 1 + A G COAD 128399863 + 128399843 128399883 41 TAGGAAACAATGGAAGATATAGATAAGAATGCTGATGGTTT TAGGAAACAATGGAAGATATGGATAAGAATGCTGATGGTTT Direct Gain 0 0.945521703312146 NA NA prediction 0.891043406624293 Functional Gain - CALU ENSG00000128595 CDS Human protein_coding chr7:128399863 chr7:128399863 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39861 0 0 1 0 2 CALU chr7:128399846 3'AG 128399846 Downstream 18bp 36678 chr7 128399863 128399863 1 + A G COAD 128399863 + 128399843 128399883 41 TAGGAAACAATGGAAGATATAGATAAGAATGCTGATGGTTT TAGGAAACAATGGAAGATATGGATAAGAATGCTGATGGTTT Direct Gain 0 0.945521703312146 NA NA prediction 0.891043406624293 Functional Gain - CALU ENSG00000128595 CDS Human protein_coding chr7:128399863 chr7:128399863 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39861 0 0 1 0 2 CALU chr7:128399906 5'GT 128399906 Upstream 44bp 36679 chr12 51442167 51442167 1 + C G CESC 51442167 + 51442147 51442187 41 TCTCCAGGGTGTGCTGGGCTCGGTCGGCTGTGTGGGGCTCG TCTCCAGGGTGTGCTGGGCTGGGTCGGCTGTGTGGGGCTCG Direct Gain 0 0.945499148001397 NA NA prediction 0.890998296002794 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51442167 chr12:51442167 nonsynonymous SNV 0.909 4 21 hm7G_associated_SNPs_39862 0 0 1 0 2 LETMD1 chr12:51442154 3'AG 51442154 Downstream 14bp 36680 chr12 51442167 51442167 1 + C G CESC 51442167 + 51442147 51442187 41 TCTCCAGGGTGTGCTGGGCTCGGTCGGCTGTGTGGGGCTCG TCTCCAGGGTGTGCTGGGCTGGGTCGGCTGTGTGGGGCTCG Direct Gain 0 0.945499148001397 NA NA prediction 0.890998296002794 Functional Gain - LETMD1 ENSG00000050426 CDS Human protein_coding chr12:51442167 chr12:51442167 nonsynonymous SNV 0.909 4 21 hm7G_associated_SNPs_39862 0 0 1 0 2 LETMD1 chr12:51442261 5'GT 51442261 Upstream 95bp 36681 chr4 152201066 152201066 1 + C G CESC 152201066 + 152201046 152201086 41 TTTATCTGTGGAGGTTCCCTCGTCAGTGAGAGGTTGATACT TTTATCTGTGGAGGTTCCCTGGTCAGTGAGAGGTTGATACT Direct Gain 0 0.945486136702261 NA NA prediction 0.890972273404521 Functional Gain - PRSS48 ENSG00000189099 CDS Human protein_coding chr4:152201066 chr4:152201066 synonymous SNV . 0 21 hm7G_associated_SNPs_39863 0 0 0 0 1 PRSS48 chr4:152201110 5'GT 152201110 Upstream 45bp 36682 chr12 50503229 50503229 1 + A G UCEC 50503229 + 50503209 50503249 41 TCCCTTGTTCATGGCTGTGTACAAGGTGTGCTACGAGGGCC TCCCTTGTTCATGGCTGTGTGCAAGGTGTGCTACGAGGGCC Direct Gain 0 0.945472029713544 NA NA prediction 0.890944059427088 Functional Gain - GPD1 ENSG00000167588 CDS Human protein_coding chr12:50503229 chr12:50503229 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39864 0 0 0 0 1 GPD1 chr12:50503206 3'AG 50503206 Downstream 24bp 36683 chr14 94503789 94503789 1 + C G CESC 94503789 + 94503769 94503809 41 TATCCATTCTTCGGGACCATCCTGAAAACAGGATTTACCGG TATCCATTCTTCGGGACCATGCTGAAAACAGGATTTACCGG Direct Gain 0 0.945449639958005 NA NA prediction 0.890899279916011 Functional Gain - OTUB2 ENSG00000089723 CDS Human protein_coding chr14:94503789 chr14:94503789 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39865 0 0 0 0 1 OTUB2 chr14:94503821 5'GT 94503821 Upstream 33bp 36684 chrX 3021810 3021810 1 + A G ESCA 3021810 + 3021790 3021830 41 CATTGTCTTATAGGTGGAAAAGGCATGGGGGGCTGGGAAGG CATTGTCTTATAGGTGGAAAGGGCATGGGGGGCTGGGAAGG Direct Gain 0 0.945426334189895 NA NA prediction 0.890852668379791 Functional Gain - ARSF ENSG00000062096 CDS Human protein_coding chrX:3021810 chrX:3021810 synonymous SNV . 0 21 hm7G_associated_SNPs_39866 0 0 0 0 1 ARSF chrX:3021803 3'AG 3021803 Downstream 8bp 36685 chr20 61429982 61429982 1 + T G OV 61429982 + 61429962 61430002 41 CCCGAATCCAGAGAGGAACTTCGTCCTTCCAGAAGAGATCA CCCGAATCCAGAGAGGAACTGCGTCCTTCCAGAAGAGATCA Direct Gain 0 0.945405141554207 NA NA prediction 0.890810283108414 Functional Gain - MRGBP ENSG00000101189 CDS Human protein_coding chr20:61429982 chr20:61429982 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_39868 0 0 1 0 2 MRGBP chr20:61429939 3'AG 61429939 Downstream 44bp 36686 chr20 61429982 61429982 1 + T G OV 61429982 + 61429962 61430002 41 CCCGAATCCAGAGAGGAACTTCGTCCTTCCAGAAGAGATCA CCCGAATCCAGAGAGGAACTGCGTCCTTCCAGAAGAGATCA Direct Gain 0 0.945405141554207 NA NA prediction 0.890810283108414 Functional Gain - MRGBP ENSG00000101189 CDS Human protein_coding chr20:61429982 chr20:61429982 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_39868 0 0 1 0 2 MRGBP chr20:61430020 5'GT 61430020 Upstream 39bp 36687 chr2 101598737 101598737 1 + A G THCA 101598737 + 101598717 101598757 41 CAGACCATCAAAGACCAGCTAGAGCAGCGGACGCGGATCCT CAGACCATCAAAGACCAGCTGGAGCAGCGGACGCGGATCCT Direct Gain 0 0.945370725032253 NA NA prediction 0.890741450064506 Functional Gain - NPAS2 ENSG00000170485 CDS Human protein_coding chr2:101598737 chr2:101598737 synonymous SNV . 0 21 hm7G_associated_SNPs_39869 0 0 1 0 1 NPAS2 chr2:101598693 3'AG 101598693 Downstream 45bp 36688 chr12 104460054 104460054 1 + T G rs139399421 104460054 + 104460034 104460074 41 TTAGTATTTGGGGGAATGGTTGAATATGGAAGATACAGCAA TTAGTATTTGGGGGAATGGTGGAATATGGAAGATACAGCAA Direct Gain 0 0.945370360724807 NA NA prediction 0.890740721449614 Functional Gain - HCFC2 ENSG00000111727 CDS Human protein_coding chr12:104460054 chr12:104460054 synonymous SNV . 0 21 hm7G_associated_SNPs_39870 0 0 1 0 1 HCFC2 chr12:104460093 5'GT 104460093 Upstream 40bp 36689 chr1 93303114 93303114 1 + A G rs11540832 93303114 + 93303094 93303134 41 TGTTGCAGATTACATGCGCTACTTAATGGAAGAAGATGAAG TGTTGCAGATTACATGCGCTGCTTAATGGAAGAAGATGAAG Direct Gain 0 0.945319089723356 NA NA prediction 0.890638179446712 Functional Gain - RPL5 ENSG00000122406 CDS Human protein_coding chr1:93303114 chr1:93303114 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_39872 2 0 1 1 1 RPL5 chr1:93303190 5'GT 93303190 Upstream 77bp 36690 chr22 29169729 29169729 1 + A G rs142089992 29169729 + 29169709 29169749 41 ACAGTGTTTCTGTTCACTGTAAAAAGAAACACAAGCGAGAG ACAGTGTTTCTGTTCACTGTGAAAAGAAACACAAGCGAGAG Direct Gain 0 0.945297188552814 NA NA prediction 0.890594377105627 Functional Gain - CCDC117 ENSG00000159873 CDS Human protein_coding chr22:29169729 chr22:29169729 nonsynonymous SNV 0.981 0 21 hm7G_associated_SNPs_39873 0 0 1 0 1 CCDC117 chr22:29169766 5'GT 29169766 Upstream 38bp 36691 chr7 44042257 44042257 1 + A G UCEC 44042257 + 44042237 44042277 41 GGAAGATGGAGTGGTGGGACAAATCTGAGGAGTCGGAGGAG GGAAGATGGAGTGGTGGGACGAATCTGAGGAGTCGGAGGAG Direct Gain 0 0.945292787074828 NA NA prediction 0.890585574149657 Functional Gain - SPDYE1 ENSG00000136206 CDS Human protein_coding chr7:44042257 chr7:44042257 nonsynonymous SNV 0.005 0 21 hm7G_associated_SNPs_39874 0 0 0 0 1 SPDYE1 chr7:44042189 3'AG 44042189 Downstream 69bp 36692 chr1 212791490 212791490 1 + A G KIRP 212791490 + 212791470 212791510 41 TAGCCCCTGAAGAAGATGAAAGGAAAAAGAGGCGACGAGAA TAGCCCCTGAAGAAGATGAAGGGAAAAAGAGGCGACGAGAA Direct Gain 0 0.945291517936979 NA NA prediction 0.890583035873959 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212791490 chr1:212791490 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39875 0 0 1 0 2 ATF3 chr1:212791469 3'AG 212791469 Downstream 22bp 36693 chr1 212791490 212791490 1 + A G KIRP 212791490 + 212791470 212791510 41 TAGCCCCTGAAGAAGATGAAAGGAAAAAGAGGCGACGAGAA TAGCCCCTGAAGAAGATGAAGGGAAAAAGAGGCGACGAGAA Direct Gain 0 0.945291517936979 NA NA prediction 0.890583035873959 Functional Gain - ATF3 ENSG00000162772 CDS Human protein_coding chr1:212791490 chr1:212791490 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39875 0 0 1 0 2 ATF3 chr1:212791576 5'GT 212791576 Upstream 87bp 36694 chr1 201965325 201965325 1 + A G LUSC 201965325 + 201965305 201965345 41 TGATGCTGCCAAGGAGGAGTACAACGGGGTGATAGAAGAAT TGATGCTGCCAAGGAGGAGTGCAACGGGGTGATAGAAGAAT Direct Gain 0 0.945265071060565 NA NA prediction 0.890530142121131 Functional Gain - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201965325 chr1:201965325 nonsynonymous SNV 0.910 3 21 hm7G_associated_SNPs_39877 0 0 1 0 2 RNPEP chr1:201965275 3'AG 201965275 Downstream 51bp 36695 chr1 201965325 201965325 1 + A G LUSC 201965325 + 201965305 201965345 41 TGATGCTGCCAAGGAGGAGTACAACGGGGTGATAGAAGAAT TGATGCTGCCAAGGAGGAGTGCAACGGGGTGATAGAAGAAT Direct Gain 0 0.945265071060565 NA NA prediction 0.890530142121131 Functional Gain - RNPEP ENSG00000176393 CDS Human protein_coding chr1:201965325 chr1:201965325 nonsynonymous SNV 0.910 3 21 hm7G_associated_SNPs_39877 0 0 1 0 2 RNPEP chr1:201965391 5'GT 201965391 Upstream 67bp 36696 chr1 25678158 25678158 1 + A G STAD 25678158 + 25678138 25678178 41 ACAAGTCCGAGGTGATAGTTACAGTGAAGGTTGTCTGGGTC ACAAGTCCGAGGTGATAGTTGCAGTGAAGGTTGTCTGGGTC Direct Gain 0 0.945251081106599 NA NA prediction 0.890502162213199 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25678158 chr1:25678158 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39878 0 0 1 0 2 TMEM50A chr1:25678117 3'AG 25678117 Downstream 42bp 36697 chr1 25678158 25678158 1 + A G STAD 25678158 + 25678138 25678178 41 ACAAGTCCGAGGTGATAGTTACAGTGAAGGTTGTCTGGGTC ACAAGTCCGAGGTGATAGTTGCAGTGAAGGTTGTCTGGGTC Direct Gain 0 0.945251081106599 NA NA prediction 0.890502162213199 Functional Gain - TMEM50A ENSG00000183726 CDS Human protein_coding chr1:25678158 chr1:25678158 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39878 0 0 1 0 2 TMEM50A chr1:25678184 5'GT 25678184 Upstream 27bp 36698 chr4 71098715 71098715 1 + C G BLCA 71098715 + 71098695 71098735 41 ACTATTTGATCTTTAGGTCTCTCAAGACCAGGAACGAGAAA ACTATTTGATCTTTAGGTCTGTCAAGACCAGGAACGAGAAA Direct Gain 0 0.945225590566219 NA NA prediction 0.890451181132439 Functional Gain - FDCSP ENSG00000181617 CDS Human protein_coding chr4:71098715 chr4:71098715 nonsynonymous SNV 0.269 3 21 hm7G_associated_SNPs_39879 0 0 0 0 1 FDCSP chr4:71098711 3'AG 71098711 Downstream 5bp 36699 chr11 22387186 22387186 1 + A G STAD 22387186 + 22387166 22387206 41 TACAGATGAAGAACGTAGGTACATAGAAGAAAGCATTGGAG TACAGATGAAGAACGTAGGTGCATAGAAGAAAGCATTGGAG Direct Gain 0 0.945217498285981 NA NA prediction 0.890434996571962 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22387186 chr11:22387186 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39880 0 0 0 0 2 SLC17A6 chr11:22387093 3'AG 22387093 Downstream 94bp 36700 chr11 22387186 22387186 1 + A G STAD 22387186 + 22387166 22387206 41 TACAGATGAAGAACGTAGGTACATAGAAGAAAGCATTGGAG TACAGATGAAGAACGTAGGTGCATAGAAGAAAGCATTGGAG Direct Gain 0 0.945217498285981 NA NA prediction 0.890434996571962 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22387186 chr11:22387186 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39880 0 0 0 0 2 SLC17A6 chr11:22387235 5'GT 22387235 Upstream 50bp 36701 chr3 9783111 9783111 1 + C G BLCA 9783111 + 9783091 9783131 41 ATCCGCAAGCGGGAAAAACTCAAAAGGGAGACGGTGAGTGC ATCCGCAAGCGGGAAAAACTGAAAAGGGAGACGGTGAGTGC Direct Gain 0 0.945175474654163 NA NA prediction 0.890350949308325 Functional Gain - BRPF1 ENSG00000156983 CDS Human protein_coding chr3:9783111 chr3:9783111 synonymous SNV . 0 21 hm7G_associated_SNPs_39881 0 0 0 0 1 BRPF1 chr3:9783123 5'GT 9783123 Upstream 13bp 36702 chr13 27829471 27829471 1 + T G UCEC 27829471 + 27829451 27829491 41 ACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAA ACCCAGCATGCTGTTGGCATGGTTGTAAACAAACAAGTTAA Direct Gain 0 0.94516658148251 NA NA prediction 0.890333162965019 Functional Gain - RPL21 ENSG00000122026 CDS Human protein_coding chr13:27829471 chr13:27829471 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_39882 0 0 1 0 2 RPL21 chr13:27829379 3'AG 27829379 Downstream 93bp 36703 chr13 27829471 27829471 1 + T G UCEC 27829471 + 27829451 27829491 41 ACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAA ACCCAGCATGCTGTTGGCATGGTTGTAAACAAACAAGTTAA Direct Gain 0 0.94516658148251 NA NA prediction 0.890333162965019 Functional Gain - RPL21 ENSG00000122026 CDS Human protein_coding chr13:27829471 chr13:27829471 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_39882 0 0 1 0 2 RPL21 chr13:27829491 5'GT 27829491 Upstream 21bp 36704 chr2 204736144 204736144 1 + T G BLCA 204736144 + 204736124 204736164 41 GACTTCCTCCTCTGGATCCTTGCAGCAGTTAGTTCGGGGTT GACTTCCTCCTCTGGATCCTGGCAGCAGTTAGTTCGGGGTT Direct Gain 0 0.945112424230613 NA NA prediction 0.890224848461226 Functional Gain - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204736144 chr2:204736144 synonymous SNV . 0 21 hm7G_associated_SNPs_39883 0 0 0 0 2 CTLA4 chr2:204736101 3'AG 204736101 Downstream 44bp 36705 chr2 204736144 204736144 1 + T G BLCA 204736144 + 204736124 204736164 41 GACTTCCTCCTCTGGATCCTTGCAGCAGTTAGTTCGGGGTT GACTTCCTCCTCTGGATCCTGGCAGCAGTTAGTTCGGGGTT Direct Gain 0 0.945112424230613 NA NA prediction 0.890224848461226 Functional Gain - CTLA4 ENSG00000163599 CDS Human protein_coding chr2:204736144 chr2:204736144 synonymous SNV . 0 21 hm7G_associated_SNPs_39883 0 0 0 0 2 CTLA4 chr2:204736210 5'GT 204736210 Upstream 67bp 36706 chr22 35659158 35659158 1 + T G UCEC 35659158 + 35659138 35659178 41 AAAACGTTCTTACAAAGATTTTTTAAGGGAAGAGGAAGAAA AAAACGTTCTTACAAAGATTGTTTAAGGGAAGAGGAAGAAA Direct Gain 0 0.945104143586893 NA NA prediction 0.890208287173786 Functional Gain - HMGXB4 ENSG00000100281 CDS Human protein_coding chr22:35659158 chr22:35659158 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39884 0 0 1 0 2 HMGXB4 chr22:35659071 3'AG 35659071 Downstream 88bp 36707 chr22 35659158 35659158 1 + T G UCEC 35659158 + 35659138 35659178 41 AAAACGTTCTTACAAAGATTTTTTAAGGGAAGAGGAAGAAA AAAACGTTCTTACAAAGATTGTTTAAGGGAAGAGGAAGAAA Direct Gain 0 0.945104143586893 NA NA prediction 0.890208287173786 Functional Gain - HMGXB4 ENSG00000100281 CDS Human protein_coding chr22:35659158 chr22:35659158 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39884 0 0 1 0 2 HMGXB4 chr22:35659219 5'GT 35659219 Upstream 62bp 36708 chr6 52548885 52548885 1 + T G rs535676501 52548885 + 52548865 52548905 41 TTGGTTTTCAGTTACAGCTTTCTTCCTGGCTACCATAATGG TTGGTTTTCAGTTACAGCTTGCTTCCTGGCTACCATAATGG Direct Gain 0 0.945101444385986 NA NA prediction 0.890202888771973 Functional Gain - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52548885 chr6:52548885 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39886 0 0 0 0 2 TMEM14A chr6:52548876 3'AG 52548876 Downstream 10bp 36709 chr6 52548885 52548885 1 + T G rs535676501 52548885 + 52548865 52548905 41 TTGGTTTTCAGTTACAGCTTTCTTCCTGGCTACCATAATGG TTGGTTTTCAGTTACAGCTTGCTTCCTGGCTACCATAATGG Direct Gain 0 0.945101444385986 NA NA prediction 0.890202888771973 Functional Gain - TMEM14A ENSG00000096092 CDS Human protein_coding chr6:52548885 chr6:52548885 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_39886 0 0 0 0 2 TMEM14A chr6:52548963 5'GT 52548963 Upstream 79bp 36710 chr3 122060326 122060326 1 + T G UCEC 122060326 + 122060306 122060346 41 ATATATGCACTTGAAAGTATTCAAAAGTCTTCCCGGACAAA ATATATGCACTTGAAAGTATGCAAAAGTCTTCCCGGACAAA Direct Gain 0 0.945083530749626 NA NA prediction 0.890167061499252 Functional Gain - CSTA ENSG00000121552 CDS Human protein_coding chr3:122060326 chr3:122060326 nonsynonymous SNV 0.004 2 21 hm7G_associated_SNPs_39887 0 0 0 0 1 CSTA chr3:122060286 3'AG 122060286 Downstream 41bp 36711 chr16 31049311 31049311 1 + A G UCEC 31049311 + 31049291 31049331 41 CAATTCAATGCAGTCCGAATACCGGGAGAAGAACGTGGAGC CAATTCAATGCAGTCCGAATGCCGGGAGAAGAACGTGGAGC Direct Gain 0 0.945031270988632 NA NA prediction 0.890062541977264 Functional Gain - STX4 ENSG00000103496 CDS Human protein_coding chr16:31049311 chr16:31049311 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39890 0 0 1 0 2 STX4 chr16:31049247 3'AG 31049247 Downstream 65bp 36712 chr16 31049311 31049311 1 + A G UCEC 31049311 + 31049291 31049331 41 CAATTCAATGCAGTCCGAATACCGGGAGAAGAACGTGGAGC CAATTCAATGCAGTCCGAATGCCGGGAGAAGAACGTGGAGC Direct Gain 0 0.945031270988632 NA NA prediction 0.890062541977264 Functional Gain - STX4 ENSG00000103496 CDS Human protein_coding chr16:31049311 chr16:31049311 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_39890 0 0 1 0 2 STX4 chr16:31049355 5'GT 31049355 Upstream 45bp 36713 chr14 21500139 21500139 1 + A G SKCM 21500139 + 21500119 21500159 41 GCGCTTTGATGAGAGTGGCAAGGGCAAGGGCATTGCGGGAC GCGCTTTGATGAGAGTGGCAGGGGCAAGGGCATTGCGGGAC Direct Gain 0 0.944995057653643 NA NA prediction 0.889990115307286 Functional Gain - TPPP2 ENSG00000179636 CDS Human protein_coding chr14:21500139 chr14:21500139 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39892 0 0 0 0 1 TPPP2 chr14:21500051 3'AG 21500051 Downstream 89bp 36714 chr8 104438333 104438333 1 + A G rs185916745 104438333 + 104438313 104438353 41 GAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCCAT GAAAATGGATGGGCCAGGCTGTGGAGACGAGGAAGAGCCAT Direct Gain 0 0.944989319013363 NA NA prediction 0.889978638026727 Functional Gain - DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438333 chr8:104438333 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39893 0 0 1 0 2 DCAF13 chr8:104438284 3'AG 104438284 Downstream 50bp 36715 chr8 104438333 104438333 1 + A G rs185916745 104438333 + 104438313 104438353 41 GAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCCAT GAAAATGGATGGGCCAGGCTGTGGAGACGAGGAAGAGCCAT Direct Gain 0 0.944989319013363 NA NA prediction 0.889978638026727 Functional Gain - DCAF13 ENSG00000164934 CDS Human protein_coding chr8:104438333 chr8:104438333 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_39893 0 0 1 0 2 DCAF13 chr8:104438373 5'GT 104438373 Upstream 41bp 36716 chr2 233399045 233399045 1 + A G LGG 233399045 + 233399025 233399065 41 CATGAGGGACCAGAACAATTACAATGAGGTAAGGGACCACA CATGAGGGACCAGAACAATTGCAATGAGGTAAGGGACCACA Direct Gain 0 0.944955884911817 NA NA prediction 0.889911769823634 Functional Gain - CHRND ENSG00000135902 CDS Human protein_coding chr2:233399045 chr2:233399045 nonsynonymous SNV 0.980 2 21 hm7G_associated_SNPs_39894 0 0 0 0 1 CHRND chr2:233399052 5'GT 233399052 Upstream 8bp 36717 chr7 99700568 99700568 1 + C G HNSC 99700568 + 99700548 99700588 41 GTGGCTCTGGTATACGAACTCCTGGATGAAGTGCTGGTGAG GTGGCTCTGGTATACGAACTGCTGGATGAAGTGCTGGTGAG Direct Gain 0 0.94494052392829 NA NA prediction 0.889881047856581 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700568 chr7:99700568 synonymous SNV . 0 21 hm7G_associated_SNPs_39895 0 0 1 0 2 AP4M1 chr7:99700487 3'AG 99700487 Downstream 82bp 36718 chr7 99700568 99700568 1 + C G HNSC 99700568 + 99700548 99700588 41 GTGGCTCTGGTATACGAACTCCTGGATGAAGTGCTGGTGAG GTGGCTCTGGTATACGAACTGCTGGATGAAGTGCTGGTGAG Direct Gain 0 0.94494052392829 NA NA prediction 0.889881047856581 Functional Gain - AP4M1 ENSG00000221838 CDS Human protein_coding chr7:99700568 chr7:99700568 synonymous SNV . 0 21 hm7G_associated_SNPs_39895 0 0 1 0 2 AP4M1 chr7:99700583 5'GT 99700583 Upstream 16bp 36719 chr5 170819773 170819773 1 + A G LUAD 170819773 + 170819753 170819793 41 AGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCC AGGATGTGAAACTCTTAAGTGTATCTGGAAAGCGGTCTGCC Direct Gain 0 0.944852855128126 NA NA prediction 0.889705710256252 Functional Gain - NPM1 ENSG00000181163 CDS Human protein_coding chr5:170819773 chr5:170819773 nonsynonymous SNV 0.856 0 21 hm7G_associated_SNPs_39899 0 0 1 0 2 NPM1 chr5:170819714 3'AG 170819714 Downstream 60bp 36720 chr5 170819773 170819773 1 + A G LUAD 170819773 + 170819753 170819793 41 AGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCC AGGATGTGAAACTCTTAAGTGTATCTGGAAAGCGGTCTGCC Direct Gain 0 0.944852855128126 NA NA prediction 0.889705710256252 Functional Gain - NPM1 ENSG00000181163 CDS Human protein_coding chr5:170819773 chr5:170819773 nonsynonymous SNV 0.856 0 21 hm7G_associated_SNPs_39899 0 0 1 0 2 NPM1 chr5:170819820 5'GT 170819820 Upstream 48bp 36721 chr2 198334798 198334798 1 + C G BLCA 198334798 + 198334778 198334818 41 TTTCATTTTGTTGTAGGCATCTTGTACTGATGGGAGACTTT TTTCATTTTGTTGTAGGCATGTTGTACTGATGGGAGACTTT Direct Gain 0 0.944850992459239 NA NA prediction 0.889701984918478 Functional Gain - COQ10B ENSG00000115520 CDS Human protein_coding chr2:198334798 chr2:198334798 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_39900 0 0 0 0 2 COQ10B chr2:198334794 3'AG 198334794 Downstream 5bp 36722 chr2 198334798 198334798 1 + C G BLCA 198334798 + 198334778 198334818 41 TTTCATTTTGTTGTAGGCATCTTGTACTGATGGGAGACTTT TTTCATTTTGTTGTAGGCATGTTGTACTGATGGGAGACTTT Direct Gain 0 0.944850992459239 NA NA prediction 0.889701984918478 Functional Gain - COQ10B ENSG00000115520 CDS Human protein_coding chr2:198334798 chr2:198334798 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_39900 0 0 0 0 2 COQ10B chr2:198334895 5'GT 198334895 Upstream 98bp 36723 chr19 44469137 44469137 1 + C G LUAD 44469137 + 44469117 44469157 41 AAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCT AAGGATGTGGCTGTGGTCTTGACTGAGGAGGAGCTGGGGCT Direct Gain 0 0.944748527443353 NA NA prediction 0.889497054886706 Functional Gain - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469137 chr19:44469137 nonsynonymous SNV 0.983 3 21 hm7G_associated_SNPs_39903 0 0 0 0 2 ZNF221 chr19:44469102 3'AG 44469102 Downstream 36bp 36724 chr19 44469137 44469137 1 + C G LUAD 44469137 + 44469117 44469157 41 AAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCT AAGGATGTGGCTGTGGTCTTGACTGAGGAGGAGCTGGGGCT Direct Gain 0 0.944748527443353 NA NA prediction 0.889497054886706 Functional Gain - ZNF221 ENSG00000159905 CDS Human protein_coding chr19:44469137 chr19:44469137 nonsynonymous SNV 0.983 3 21 hm7G_associated_SNPs_39903 0 0 0 0 2 ZNF221 chr19:44469228 5'GT 44469228 Upstream 92bp 36725 chr12 117423170 117423170 1 + A G OV 117423170 + 117423150 117423190 41 ATCCCCCAATGAGGAGGGGTACTGGCAGATAGCTGCGGAAT ATCCCCCAATGAGGAGGGGTGCTGGCAGATAGCTGCGGAAT Direct Gain 0 0.944641793724022 NA NA prediction 0.889283587448044 Functional Gain - FBXW8 ENSG00000174989 CDS Human protein_coding chr12:117423170 chr12:117423170 nonsynonymous SNV 0.005 2 21 hm7G_associated_SNPs_39906 0 0 1 0 1 FBXW8 chr12:117423207 5'GT 117423207 Upstream 38bp 36726 chr19 5827770 5827770 1 + C G rs143772327 5827770 + 5827750 5827790 41 CCCCTCGCAGACCGTGCACTCCTGCAGGGGGCCCCGGATGC CCCCTCGCAGACCGTGCACTGCTGCAGGGGGCCCCGGATGC Direct Gain 0 0.944576367427674 NA NA prediction 0.889152734855349 Functional Gain - NRTN ENSG00000171119 CDS Human protein_coding chr19:5827770 chr19:5827770 synonymous SNV . 0 21 hm7G_associated_SNPs_39908 0 0 0 0 1 NRTN chr19:5827760 3'AG 5827760 Downstream 11bp 36727 chrX 54470521 54470521 1 + C G CESC 54470521 + 54470501 54470541 41 AGGGAGATGGCCTCCTGCATCACTCAGAGAAAATGCAAGGT AGGGAGATGGCCTCCTGCATGACTCAGAGAAAATGCAAGGT Direct Gain 0 0.944569537841395 NA NA prediction 0.889139075682791 Functional Gain - TSR2 ENSG00000158526 CDS Human protein_coding chrX:54470521 chrX:54470521 nonsynonymous SNV 0.960 1 21 hm7G_associated_SNPs_39909 0 0 0 0 2 TSR2 chrX:54470441 3'AG 54470441 Downstream 81bp 36728 chrX 54470521 54470521 1 + C G CESC 54470521 + 54470501 54470541 41 AGGGAGATGGCCTCCTGCATCACTCAGAGAAAATGCAAGGT AGGGAGATGGCCTCCTGCATGACTCAGAGAAAATGCAAGGT Direct Gain 0 0.944569537841395 NA NA prediction 0.889139075682791 Functional Gain - TSR2 ENSG00000158526 CDS Human protein_coding chrX:54470521 chrX:54470521 nonsynonymous SNV 0.960 1 21 hm7G_associated_SNPs_39909 0 0 0 0 2 TSR2 chrX:54470617 5'GT 54470617 Upstream 97bp 36729 chr5 172586940 172586940 1 + A G UCEC 172586940 + 172586920 172586960 41 TCCTCTGAACTTTTAGGAAAACCACCAAAGAGAGCCTGGCC TCCTCTGAACTTTTAGGAAAGCCACCAAAGAGAGCCTGGCC Direct Gain 0 0.944544643657433 NA NA prediction 0.889089287314866 Functional Gain - BNIP1 ENSG00000113734 CDS Human protein_coding chr5:172586940 chr5:172586940 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_39911 0 0 1 0 1 BNIP1 chr5:172586936 3'AG 172586936 Downstream 5bp 36730 chr11 112040041 112040041 1 + C G rs148810701 112040041 + 112040021 112040061 41 TAATAGAAATTGCAAGAGGCCAAGAGAATTGGAGGTAAGCT TAATAGAAATTGCAAGAGGCGAAGAGAATTGGAGGTAAGCT Direct Gain 0 0.944503597314066 NA NA prediction 0.889007194628132 Functional Gain - TEX12 ENSG00000150783 CDS Human antisense chr11:112040041 chr11:112040041 nonsynonymous SNV 0.886 0 21 hm7G_associated_SNPs_39913 0 0 0 0 3 TEX12 chr11:112039968 3'AG 112039968 Downstream 74bp 36731 chr11 112040041 112040041 1 + C G rs148810701 112040041 + 112040021 112040061 41 TAATAGAAATTGCAAGAGGCCAAGAGAATTGGAGGTAAGCT TAATAGAAATTGCAAGAGGCGAAGAGAATTGGAGGTAAGCT Direct Gain 0 0.944503597314066 NA NA prediction 0.889007194628132 Functional Gain - TEX12 ENSG00000150783 CDS Human antisense chr11:112040041 chr11:112040041 nonsynonymous SNV 0.886 0 21 hm7G_associated_SNPs_39913 0 0 0 0 3 TEX12 chr11:112039976 3'AG 112039976 Downstream 66bp 36732 chr11 112040041 112040041 1 + C G rs148810701 112040041 + 112040021 112040061 41 TAATAGAAATTGCAAGAGGCCAAGAGAATTGGAGGTAAGCT TAATAGAAATTGCAAGAGGCGAAGAGAATTGGAGGTAAGCT Direct Gain 0 0.944503597314066 NA NA prediction 0.889007194628132 Functional Gain - TEX12 ENSG00000150783 CDS Human protein_coding chr11:112040041 chr11:112040041 nonsynonymous SNV 0.886 0 21 hm7G_associated_SNPs_39913 0 0 0 0 3 TEX12 chr11:112040054 5'GT 112040054 Upstream 14bp 36733 chr5 7875395 7875395 1 + A G UCEC 7875395 + 7875375 7875415 41 CGGTGATTCAGAATACACCTACTTTTGCAATGGGGGGAAGA CGGTGATTCAGAATACACCTGCTTTTGCAATGGGGGGAAGA Direct Gain 0 0.944465403140612 NA NA prediction 0.888930806281225 Functional Gain - MTRR ENSG00000124275 CDS Human protein_coding chr5:7875395 chr5:7875395 nonsynonymous SNV 0.944 2 21 hm7G_associated_SNPs_39915 0 0 1 0 1 MTRR chr5:7875371 3'AG 7875371 Downstream 25bp 36734 chr2 27660166 27660166 1 + C G LUAD 27660166 + 27660146 27660186 41 TCAGGGCAATGGAGAGTCCTCATATGTGCCACAGGAAGCCA TCAGGGCAATGGAGAGTCCTGATATGTGCCACAGGAAGCCA Direct Gain 0 0.944444219654408 NA NA prediction 0.888888439308816 Functional Gain - NRBP1 ENSG00000115216 CDS Human protein_coding chr2:27660166 chr2:27660166 stopgain 1.000 1 21 hm7G_associated_SNPs_39918 0 0 1 0 1 NRBP1 chr2:27660129 3'AG 27660129 Downstream 38bp 36735 chr1 231386740 231386740 1 + A G COAD 231386740 + 231386720 231386760 41 AGTGGGATGAGTTTGAAGATATTTTAGAAGAGAGGAGGCAT AGTGGGATGAGTTTGAAGATGTTTTAGAAGAGAGGAGGCAT Direct Gain 0 0.944414320490426 NA NA prediction 0.888828640980852 Functional Gain - GNPAT ENSG00000116906 CDS Human protein_coding chr1:231386740 chr1:231386740 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_39920 0 0 1 0 1 GNPAT chr1:231386707 3'AG 231386707 Downstream 34bp 36736 chr6 107365497 107365497 1 + C G BLCA 107365497 + 107365477 107365517 41 GCTTTCTACAAAGGTGAACTCAGGCTGAATGAGGAAAAATT GCTTTCTACAAAGGTGAACTGAGGCTGAATGAGGAAAAATT Direct Gain 0 0.944407540008093 NA NA prediction 0.888815080016185 Functional Gain - C6orf203 ENSG00000130349 CDS Human protein_coding chr6:107365497 chr6:107365497 synonymous SNV . 0 21 hm7G_associated_SNPs_39921 0 0 1 0 2 C6orf203 chr6:107365464 3'AG 107365464 Downstream 34bp 36737 chr6 107365497 107365497 1 + C G BLCA 107365497 + 107365477 107365517 41 GCTTTCTACAAAGGTGAACTCAGGCTGAATGAGGAAAAATT GCTTTCTACAAAGGTGAACTGAGGCTGAATGAGGAAAAATT Direct Gain 0 0.944407540008093 NA NA prediction 0.888815080016185 Functional Gain - C6orf203 ENSG00000130349 CDS Human protein_coding chr6:107365497 chr6:107365497 synonymous SNV . 0 21 hm7G_associated_SNPs_39921 0 0 1 0 2 C6orf203 chr6:107365536 5'GT 107365536 Upstream 40bp 36738 chr6 146875606 146875606 1 + A G LIHC 146875606 + 146875586 146875626 41 TTACAGGATAACATAAACATAGAGGAAGCTGCCCGGTTCCT TTACAGGATAACATAAACATGGAGGAAGCTGCCCGGTTCCT Direct Gain 0 0.944327314288573 NA NA prediction 0.888654628577146 Functional Gain - RAB32 ENSG00000118508 CDS Human protein_coding chr6:146875606 chr6:146875606 nonsynonymous SNV 0.930 4 21 hm7G_associated_SNPs_39926 0 0 0 0 1 RAB32 chr6:146875592 3'AG 146875592 Downstream 15bp 36739 chr11 86123556 86123556 1 + A G rs3741005 86123556 + 86123536 86123576 41 CGAAATAAAGCAAAGACAATACAGAGAGTTGATGGACCGCC CGAAATAAAGCAAAGACAATGCAGAGAGTTGATGGACCGCC Direct Gain 0 0.944309253881047 NA NA prediction 0.888618507762095 Functional Gain - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86123556 chr11:86123556 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_39928 0 0 1 0 1 CCDC81 chr11:86123601 5'GT 86123601 Upstream 46bp 36740 chr3 170110112 170110112 1 + C G LUAD 170110112 + 170110092 170110132 41 CAAGAACTCCAAGATGAACTCAGACAGGAACGGGAAGCAAG CAAGAACTCCAAGATGAACTGAGACAGGAACGGGAAGCAAG Direct Gain 0 0.944291851050053 NA NA prediction 0.888583702100106 Functional Gain - SKIL ENSG00000136603 CDS Human protein_coding chr3:170110112 chr3:170110112 synonymous SNV . 0 21 hm7G_associated_SNPs_39929 0 0 1 0 1 SKIL chr3:170110047 3'AG 170110047 Downstream 66bp 36741 chr3 186362648 186362648 1 + A G UCEC 186362648 + 186362628 186362668 41 CACCGAGTCTCTTGCGAAATACAACAATGAGAACACATCCA CACCGAGTCTCTTGCGAAATGCAACAATGAGAACACATCCA Direct Gain 0 0.944238425577555 NA NA prediction 0.88847685115511 Functional Gain - FETUB ENSG00000090512 CDS Human protein_coding chr3:186362648 chr3:186362648 nonsynonymous SNV 0.884 3 21 hm7G_associated_SNPs_39932 0 0 0 0 1 FETUB chr3:186362709 5'GT 186362709 Upstream 62bp 36742 chr1 86898130 86898130 1 + T G UCEC 86898130 + 86898110 86898150 41 AACTGTATTATTAGTAAGCTTTTTAAAGAAGGATGCACCTT AACTGTATTATTAGTAAGCTGTTTAAAGAAGGATGCACCTT Direct Gain 0 0.944190900203379 NA NA prediction 0.888381800406759 Functional Gain - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86898130 chr1:86898130 synonymous SNV . 0 21 hm7G_associated_SNPs_39935 0 0 0 0 2 CLCA2 chr1:86898052 3'AG 86898052 Downstream 79bp 36743 chr1 86898130 86898130 1 + T G UCEC 86898130 + 86898110 86898150 41 AACTGTATTATTAGTAAGCTTTTTAAAGAAGGATGCACCTT AACTGTATTATTAGTAAGCTGTTTAAAGAAGGATGCACCTT Direct Gain 0 0.944190900203379 NA NA prediction 0.888381800406759 Functional Gain - CLCA2 ENSG00000137975 CDS Human protein_coding chr1:86898130 chr1:86898130 synonymous SNV . 0 21 hm7G_associated_SNPs_39935 0 0 0 0 2 CLCA2 chr1:86898211 5'GT 86898211 Upstream 82bp 36744 chr6 43613008 43613008 1 + A G UCEC 43613008 + 43612988 43613028 41 TGGCCTCGTCGCCGATTACTACATCGCGCAGGGCCTGAGTG TGGCCTCGTCGCCGATTACTGCATCGCGCAGGGCCTGAGTG Direct Gain 0 0.944160345848301 NA NA prediction 0.888320691696601 Functional Gain - RSPH9 ENSG00000172426 CDS Human protein_coding chr6:43613008 chr6:43613008 nonsynonymous SNV 0.963 3 21 hm7G_associated_SNPs_39936 0 0 0 0 1 RSPH9 chr6:43613062 5'GT 43613062 Upstream 55bp 36745 chr2 27310210 27310210 1 + C G BLCA 27310210 + 27310190 27310230 41 CAAGTACCCTAAGGAGGACTCGGAGATAAGGTAGGGGCGCC CAAGTACCCTAAGGAGGACTGGGAGATAAGGTAGGGGCGCC Direct Gain 0 0.944143546897864 NA NA prediction 0.888287093795728 Functional Gain - KHK ENSG00000138030 CDS Human protein_coding chr2:27310210 chr2:27310210 nonsynonymous SNV 0.882 3 21 hm7G_associated_SNPs_39938 0 0 1 0 1 KHK chr2:27310219 5'GT 27310219 Upstream 10bp 36746 chr7 44240763 44240763 1 + A G rs150272603 44240763 + 44240743 44240783 41 GTACAGCCTCAGCGTCCTCTACAAAGGCGAGGCCAAGGTGG GTACAGCCTCAGCGTCCTCTGCAAAGGCGAGGCCAAGGTGG Direct Gain 0 0.944113482698057 NA NA prediction 0.888226965396114 Functional Gain - YKT6 ENSG00000106636 CDS Human protein_coding chr7:44240763 chr7:44240763 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_39940 0 0 1 0 1 YKT6 chr7:44240838 5'GT 44240838 Upstream 76bp 36747 chr20 31427559 31427559 1 + C G BLCA 31427559 + 31427539 31427579 41 AGCTCCCCAGAGGCCCATCTCAACACAGAGAACCGCTGCGG AGCTCCCCAGAGGCCCATCTGAACACAGAGAACCGCTGCGG Direct Gain 0 0.944084666000245 NA NA prediction 0.88816933200049 Functional Gain - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31427559 chr20:31427559 stopgain 0.998 0 21 hm7G_associated_SNPs_39943 0 0 1 0 1 MAPRE1 chr20:31427541 3'AG 31427541 Downstream 19bp 36748 chr1 209879175 209879175 1 + A G UCEC 209879175 + 209879155 209879195 41 GAGATGCTCCAAGGAAAGAAAGTGATTGTCACAGGGGCCAG GAGATGCTCCAAGGAAAGAAGGTGATTGTCACAGGGGCCAG Direct Gain 0 0.94407664060085 NA NA prediction 0.8881532812017 Functional Gain - HSD11B1 ENSG00000117594 CDS Human protein_coding chr1:209879175 chr1:209879175 synonymous SNV . 0 21 hm7G_associated_SNPs_39944 0 0 0 0 1 HSD11B1 chr1:209879156 3'AG 209879156 Downstream 20bp 36749 chr10 95262912 95262912 1 + C G CESC 95262912 + 95262892 95262932 41 AGAAGGAGAAGAATGCTTATCAACTCACAGAGAAGGACAAA AGAAGGAGAAGAATGCTTATGAACTCACAGAGAAGGACAAA Direct Gain 0 0.944076622846679 NA NA prediction 0.888153245693357 Functional Gain - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95262912 chr10:95262912 nonsynonymous SNV 0.781 0 21 hm7G_associated_SNPs_39945 0 0 1 0 1 CEP55 chr10:95262870 3'AG 95262870 Downstream 43bp 36750 chr14 24910013 24910013 1 - T C STAD 24910013 - 24909993 24910033 41 CCAGGCTTCCTGGAGATTCTACACGCCAGGTGGTGGTGCGC CCAGGCTTCCTGGAGATTCTGCACGCCAGGTGGTGGTGCGC Direct Gain 0 0.944013477977742 NA NA prediction 0.888026955955484 Functional Gain - SDR39U1 ENSG00000100445 CDS Human protein_coding chr14:24910013 chr14:24910013 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39946 0 0 1 0 1 SDR39U1 chr14:24909989 5'GT 24909989 Upstream 25bp 36751 chr6 111288781 111288781 1 + C G HNSC 111288781 + 111288761 111288801 41 CCAACATGATTTGTAACTTTCTACATGAAAATGAAGACGAA CCAACATGATTTGTAACTTTGTACATGAAAATGAAGACGAA Direct Gain 0 0.943992755252495 NA NA prediction 0.88798551050499 Functional Gain - GTF3C6 ENSG00000155115 CDS Human protein_coding chr6:111288781 chr6:111288781 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_39948 0 0 1 0 1 GTF3C6 chr6:111288713 3'AG 111288713 Downstream 69bp 36752 chr1 54428054 54428054 1 + A G COAD 54428054 + 54428034 54428074 41 GAAGGAATTTGATCATAGTAACTGCAAGACAGAGGGCTGGG GAAGGAATTTGATCATAGTAGCTGCAAGACAGAGGGCTGGG Direct Gain 0 0.943953686591356 NA NA prediction 0.887907373182713 Functional Gain - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54428054 chr1:54428054 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39950 0 0 0 0 2 LRRC42 chr1:54427969 3'AG 54427969 Downstream 86bp 36753 chr1 54428054 54428054 1 + A G COAD 54428054 + 54428034 54428074 41 GAAGGAATTTGATCATAGTAACTGCAAGACAGAGGGCTGGG GAAGGAATTTGATCATAGTAGCTGCAAGACAGAGGGCTGGG Direct Gain 0 0.943953686591356 NA NA prediction 0.887907373182713 Functional Gain - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54428054 chr1:54428054 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39950 0 0 0 0 2 LRRC42 chr1:54428082 5'GT 54428082 Upstream 29bp 36754 chr20 30918113 30918113 1 + C G UCEC 30918113 + 30918093 30918133 41 AAGCACTGCAAATAAGAAATCCAAGGCCAGGTGAGTGGCTT AAGCACTGCAAATAAGAAATGCAAGGCCAGGTGAGTGGCTT Direct Gain 0 0.943920395475307 NA NA prediction 0.887840790950615 Functional Gain - KIF3B ENSG00000101350 CDS Human protein_coding chr20:30918113 chr20:30918113 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_39952 0 0 1 0 1 KIF3B chr20:30918122 5'GT 30918122 Upstream 10bp 36755 chr6 123130252 123130252 1 + A G LUSC 123130252 + 123130232 123130272 41 GCAGGATATGTTGCAGTATTACTTGAATCTGACAGAGGCGA GCAGGATATGTTGCAGTATTGCTTGAATCTGACAGAGGCGA Direct Gain 0 0.943916004853061 NA NA prediction 0.887832009706123 Functional Gain - SMPDL3A ENSG00000172594 CDS Human protein_coding chr6:123130252 chr6:123130252 nonsynonymous SNV 0.995 5 21 hm7G_associated_SNPs_39953 0 0 1 0 1 SMPDL3A chr6:123130236 3'AG 123130236 Downstream 17bp 36756 chr5 6749688 6749688 1 + C G CESC 6749688 + 6749668 6749708 41 AGTACTTTAGGAAGAATCATCAAAGTAACTCAGGAGGTGAT AGTACTTTAGGAAGAATCATGAAAGTAACTCAGGAGGTGAT Direct Gain 0 0.943883793964414 NA NA prediction 0.887767587928828 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6749688 chr5:6749688 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39954 0 0 1 0 2 PAPD7 chr5:6749670 3'AG 6749670 Downstream 19bp 36757 chr5 6749688 6749688 1 + C G CESC 6749688 + 6749668 6749708 41 AGTACTTTAGGAAGAATCATCAAAGTAACTCAGGAGGTGAT AGTACTTTAGGAAGAATCATGAAAGTAACTCAGGAGGTGAT Direct Gain 0 0.943883793964414 NA NA prediction 0.887767587928828 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6749688 chr5:6749688 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39954 0 0 1 0 2 PAPD7 chr5:6749770 5'GT 6749770 Upstream 83bp 36758 chr7 98984364 98984364 1 + A G SKCM 98984364 + 98984344 98984384 41 TCTATGAAAAGAGCGGTGCCAAATGGACCAAGGTGCACGAG TCTATGAAAAGAGCGGTGCCGAATGGACCAAGGTGCACGAG Direct Gain 0 0.943861792366805 NA NA prediction 0.88772358473361 Functional Gain - ARPC1B ENSG00000130429 CDS Human other chr7:98984364 chr7:98984364 nonsynonymous SNV 0.009 1 21 hm7G_associated_SNPs_39955 0 0 1 4 2 ARPC1B chr7:98984308 3'AG 98984308 Downstream 57bp 36759 chr7 98984364 98984364 1 + A G SKCM 98984364 + 98984344 98984384 41 TCTATGAAAAGAGCGGTGCCAAATGGACCAAGGTGCACGAG TCTATGAAAAGAGCGGTGCCGAATGGACCAAGGTGCACGAG Direct Gain 0 0.943861792366805 NA NA prediction 0.88772358473361 Functional Gain - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98984364 chr7:98984364 nonsynonymous SNV 0.009 1 21 hm7G_associated_SNPs_39955 0 0 1 4 2 ARPC1B chr7:98984412 5'GT 98984412 Upstream 49bp 36760 chr11 129246023 129246023 1 + C G BLCA 129246023 + 129246003 129246043 41 TTCATGATCGACGAGATCCTCTCCAAGGAGACCTGCGATTA TTCATGATCGACGAGATCCTGTCCAAGGAGACCTGCGATTA Direct Gain 0 0.943825221858403 NA NA prediction 0.887650443716806 Functional Gain - BARX2 ENSG00000043039 CDS Human protein_coding chr11:129246023 chr11:129246023 synonymous SNV . 0 21 hm7G_associated_SNPs_39958 0 0 1 0 1 BARX2 chr11:129246117 5'GT 129246117 Upstream 95bp 36761 chr5 176732982 176732982 1 + C G LIHC 176732982 + 176732962 176733002 41 TTTGGTGTCTCCAGAGCTGTCCAGGTGAGCAGTGTTGTTGG TTTGGTGTCTCCAGAGCTGTGCAGGTGAGCAGTGTTGTTGG Direct Gain 0 0.943822322252574 NA NA prediction 0.887644644505147 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176732982 chr5:176732982 synonymous SNV . 0 21 hm7G_associated_SNPs_39959 0 0 1 0 1 PRELID1 chr5:176732985 5'GT 176732985 Upstream 4bp 36762 chr2 187364950 187364950 1 + C G HNSC 187364950 + 187364930 187364970 41 AAGAAATTGAAGAAGGATGACAAGAAGAAAGAATTGCAGGA AAGAAATTGAAGAAGGATGAGAAGAAGAAAGAATTGCAGGA Direct Gain 0 0.943809274549737 NA NA prediction 0.887618549099474 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187364950 chr2:187364950 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39960 0 0 1 0 2 ZC3H15 chr2:187364909 3'AG 187364909 Downstream 42bp 36763 chr2 187364950 187364950 1 + C G HNSC 187364950 + 187364930 187364970 41 AAGAAATTGAAGAAGGATGACAAGAAGAAAGAATTGCAGGA AAGAAATTGAAGAAGGATGAGAAGAAGAAAGAATTGCAGGA Direct Gain 0 0.943809274549737 NA NA prediction 0.887618549099474 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187364950 chr2:187364950 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39960 0 0 1 0 2 ZC3H15 chr2:187365020 5'GT 187365020 Upstream 71bp 36764 chr7 26248156 26248156 1 + C G CESC 26248156 + 26248136 26248176 41 TGAATCTGATGACAGCAAATCAAAGAAGAAAAGAGATGCTG TGAATCTGATGACAGCAAATGAAAGAAGAAAAGAGATGCTG Direct Gain 0 0.943770582261849 NA NA prediction 0.887541164523698 Functional Gain - CBX3 ENSG00000122565 CDS Human protein_coding chr7:26248156 chr7:26248156 stopgain 1.000 0 21 hm7G_associated_SNPs_39963 0 0 1 0 2 CBX3 chr7:26248086 3'AG 26248086 Downstream 71bp 36765 chr7 26248156 26248156 1 + C G CESC 26248156 + 26248136 26248176 41 TGAATCTGATGACAGCAAATCAAAGAAGAAAAGAGATGCTG TGAATCTGATGACAGCAAATGAAAGAAGAAAAGAGATGCTG Direct Gain 0 0.943770582261849 NA NA prediction 0.887541164523698 Functional Gain - CBX3 ENSG00000122565 CDS Human protein_coding chr7:26248156 chr7:26248156 stopgain 1.000 0 21 hm7G_associated_SNPs_39963 0 0 1 0 2 CBX3 chr7:26248175 5'GT 26248175 Upstream 20bp 36766 chr1 40716987 40716987 1 + A G GBM 40716987 + 40716967 40717007 41 TTTGTAATCACACTCTACAAACTTTACAAGAAGGGCTCACA TTTGTAATCACACTCTACAAGCTTTACAAGAAGGGCTCACA Direct Gain 0 0.943717647173543 NA NA prediction 0.887435294347086 Functional Gain - TMCO2 ENSG00000188800 CDS Human protein_coding chr1:40716987 chr1:40716987 synonymous SNV . 0 21 hm7G_associated_SNPs_39965 0 0 0 0 1 TMCO2 chr1:40716955 3'AG 40716955 Downstream 33bp 36767 chr12 122473253 122473253 1 + A G LIHC 122473253 + 122473233 122473273 41 GCAGAAAAACAAGAATAAGAAAAAAGGCAAGGACGAGAAGT GCAGAAAAACAAGAATAAGAGAAAAGGCAAGGACGAGAAGT Direct Gain 0 0.943715163404312 NA NA prediction 0.887430326808625 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122473253 chr12:122473253 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39966 0 0 1 0 2 BCL7A chr12:122473237 3'AG 122473237 Downstream 17bp 36768 chr12 122473253 122473253 1 + A G LIHC 122473253 + 122473233 122473273 41 GCAGAAAAACAAGAATAAGAAAAAAGGCAAGGACGAGAAGT GCAGAAAAACAAGAATAAGAGAAAAGGCAAGGACGAGAAGT Direct Gain 0 0.943715163404312 NA NA prediction 0.887430326808625 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122473253 chr12:122473253 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39966 0 0 1 0 2 BCL7A chr12:122473333 5'GT 122473333 Upstream 81bp 36769 chr2 127453579 127453579 1 + A G rs115178969 127453579 + 127453559 127453599 41 CCTCTTCGTCATGCTGCGCTACATGTACCGGCACAAGGGCA CCTCTTCGTCATGCTGCGCTGCATGTACCGGCACAAGGGCA Direct Gain 0 0.943714943983917 NA NA prediction 0.887429887967834 Functional Gain - GYPC ENSG00000136732 CDS Human protein_coding chr2:127453579 chr2:127453579 nonsynonymous SNV 0.094 3 21 hm7G_associated_SNPs_39967 0 0 1 0 1 GYPC chr2:127453522 3'AG 127453522 Downstream 58bp 36770 chr12 12871204 12871204 1 + T G PRAD 12871204 + 12871184 12871224 41 GTCGGACAGCCAGACGGGGTTAGCGGAGCAATGCGCAGGAA GTCGGACAGCCAGACGGGGTGAGCGGAGCAATGCGCAGGAA Direct Gain 0 0.943713394307146 NA NA prediction 0.887426788614292 Functional Gain - CDKN1B ENSG00000111276 CDS Human protein_coding chr12:12871204 chr12:12871204 stopgain 0.172 0 21 hm7G_associated_SNPs_39968 0 0 1 0 1 CDKN1B chr12:12871248 5'GT 12871248 Upstream 45bp 36771 chr1 206327476 206327476 1 + A G SKCM 206327476 + 206327456 206327496 41 GTCTTTCTCTCCATGTAGTAACCCAGAAGGTGGTGCGGGGA GTCTTTCTCTCCATGTAGTAGCCCAGAAGGTGGTGCGGGGA Direct Gain 0 0.943666930585712 NA NA prediction 0.887333861171425 Functional Gain - CTSE ENSG00000196188 CDS Human protein_coding chr1:206327476 chr1:206327476 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_39970 0 0 0 0 1 CTSE chr1:206327474 3'AG 206327474 Downstream 3bp 36772 chr5 134106633 134106633 1 + A G SARC 134106633 + 134106613 134106653 41 CTGATGGTGGGGAAAGTTCTAAAGAGAAGAAAAAAGACAAA CTGATGGTGGGGAAAGTTCTGAAGAGAAGAAAAAAGACAAA Direct Gain 0 0.943639035517353 NA NA prediction 0.887278071034706 Functional Gain - DDX46 ENSG00000145833 CDS Human protein_coding chr5:134106633 chr5:134106633 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39972 0 0 1 0 2 DDX46 chr5:134106593 3'AG 134106593 Downstream 41bp 36773 chr5 134106633 134106633 1 + A G SARC 134106633 + 134106613 134106653 41 CTGATGGTGGGGAAAGTTCTAAAGAGAAGAAAAAAGACAAA CTGATGGTGGGGAAAGTTCTGAAGAGAAGAAAAAAGACAAA Direct Gain 0 0.943639035517353 NA NA prediction 0.887278071034706 Functional Gain - DDX46 ENSG00000145833 CDS Human protein_coding chr5:134106633 chr5:134106633 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_39972 0 0 1 0 2 DDX46 chr5:134106689 5'GT 134106689 Upstream 57bp 36774 chr5 134190991 134190991 1 + A G MESO 134190991 + 134190971 134191011 41 GACAACTAAAGCTGCGGGATACAAAGTCAGCCCAGGCAGAC GACAACTAAAGCTGCGGGATGCAAAGTCAGCCCAGGCAGAC Direct Gain 0 0.94363852047338 NA NA prediction 0.88727704094676 Functional Gain - C5orf24 ENSG00000181904 CDS Human protein_coding chr5:134190991 chr5:134190991 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39973 0 0 1 0 1 C5orf24 chr5:134191017 5'GT 134191017 Upstream 27bp 36775 chr20 36668886 36668886 1 + C G BRCA 36668886 + 36668866 36668906 41 TATTTAGCGAATGATGTCATCCAAAACAGTAAAAGGAAAGG TATTTAGCGAATGATGTCATGCAAAACAGTAAAAGGAAAGG Direct Gain 0 0.943635754202773 NA NA prediction 0.887271508405547 Functional Gain - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36668886 chr20:36668886 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39974 0 0 1 0 2 RPRD1B chr20:36668837 3'AG 36668837 Downstream 50bp 36776 chr20 36668886 36668886 1 + C G BRCA 36668886 + 36668866 36668906 41 TATTTAGCGAATGATGTCATCCAAAACAGTAAAAGGAAAGG TATTTAGCGAATGATGTCATGCAAAACAGTAAAAGGAAAGG Direct Gain 0 0.943635754202773 NA NA prediction 0.887271508405547 Functional Gain - RPRD1B ENSG00000101413 CDS Human protein_coding chr20:36668886 chr20:36668886 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39974 0 0 1 0 2 RPRD1B chr20:36668966 5'GT 36668966 Upstream 81bp 36777 chr7 141427199 141427199 1 + C G HNSC 141427199 + 141427179 141427219 41 CTGGGAAAAACAGAAGAGCTCCAACAGCAGCTGAATTTGGA CTGGGAAAAACAGAAGAGCTGCAACAGCAGCTGAATTTGGA Direct Gain 0 0.943606971847871 NA NA prediction 0.887213943695741 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141427199 chr7:141427199 synonymous SNV . 0 21 hm7G_associated_SNPs_39976 0 0 0 0 2 WEE2 chr7:141427104 3'AG 141427104 Downstream 96bp 36778 chr7 141427199 141427199 1 + C G HNSC 141427199 + 141427179 141427219 41 CTGGGAAAAACAGAAGAGCTCCAACAGCAGCTGAATTTGGA CTGGGAAAAACAGAAGAGCTGCAACAGCAGCTGAATTTGGA Direct Gain 0 0.943606971847871 NA NA prediction 0.887213943695741 Functional Gain - WEE2 ENSG00000214102 CDS Human protein_coding chr7:141427199 chr7:141427199 synonymous SNV . 0 21 hm7G_associated_SNPs_39976 0 0 0 0 2 WEE2 chr7:141427246 5'GT 141427246 Upstream 48bp 36779 chr10 112341740 112341740 1 + C G LUAD 112341740 + 112341720 112341760 41 TTGAAGAGAGATTACATACTCTAGAGGAAGAAAAGGAAGAA TTGAAGAGAGATTACATACTGTAGAGGAAGAAAAGGAAGAA Direct Gain 0 0.943508645863409 NA NA prediction 0.887017291726819 Functional Gain - SMC3 ENSG00000108055 CDS Human protein_coding chr10:112341740 chr10:112341740 nonsynonymous SNV 0.947 5 21 hm7G_associated_SNPs_39978 0 0 1 0 1 SMC3 chr10:112341681 3'AG 112341681 Downstream 60bp 36780 chr11 65831159 65831159 1 + C G BLCA 65831159 + 65831139 65831179 41 GGAATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAA GGAATGGAGACCCCTGAACTGATTGAGCTGAGGAAGAAGAA Direct Gain 0 0.943480838123327 NA NA prediction 0.886961676246654 Functional Gain - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65831159 chr11:65831159 synonymous SNV . 0 21 hm7G_associated_SNPs_39981 0 0 1 0 2 SF3B2 chr11:65831099 3'AG 65831099 Downstream 61bp 36781 chr11 65831159 65831159 1 + C G BLCA 65831159 + 65831139 65831179 41 GGAATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAA GGAATGGAGACCCCTGAACTGATTGAGCTGAGGAAGAAGAA Direct Gain 0 0.943480838123327 NA NA prediction 0.886961676246654 Functional Gain - SF3B2 ENSG00000087365 CDS Human protein_coding chr11:65831159 chr11:65831159 synonymous SNV . 0 21 hm7G_associated_SNPs_39981 0 0 1 0 2 SF3B2 chr11:65831200 5'GT 65831200 Upstream 42bp 36782 chr7 31735120 31735120 1 + C G BLCA 31735120 + 31735100 31735140 41 TTCATTAAGGACTGTGATCTCAAAAAGAAGCCTAGAAAGGG TTCATTAAGGACTGTGATCTGAAAAAGAAGCCTAGAAAGGG Direct Gain 0 0.943459374327683 NA NA prediction 0.886918748655367 Functional Gain - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31735120 chr7:31735120 synonymous SNV . 0 21 hm7G_associated_SNPs_39984 0 0 0 0 1 PPP1R17 chr7:31735083 3'AG 31735083 Downstream 38bp 36783 chr10 104632936 104632936 1 + A G LUAD 104632936 + 104632916 104632956 41 TGTGACTTTTATTCATGGCTACATTGAGAAGTTGGGAGAGG TGTGACTTTTATTCATGGCTGCATTGAGAAGTTGGGAGAGG Direct Gain 0 0.943445639230347 NA NA prediction 0.886891278460693 Functional Gain - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104632936 chr10:104632936 nonsynonymous SNV 0.224 1 21 hm7G_associated_SNPs_39986 0 0 0 0 2 AS3MT chr10:104632854 3'AG 104632854 Downstream 83bp 36784 chr10 104632936 104632936 1 + A G LUAD 104632936 + 104632916 104632956 41 TGTGACTTTTATTCATGGCTACATTGAGAAGTTGGGAGAGG TGTGACTTTTATTCATGGCTGCATTGAGAAGTTGGGAGAGG Direct Gain 0 0.943445639230347 NA NA prediction 0.886891278460693 Functional Gain - AS3MT ENSG00000214435 CDS Human protein_coding chr10:104632936 chr10:104632936 nonsynonymous SNV 0.224 1 21 hm7G_associated_SNPs_39986 0 0 0 0 2 AS3MT chr10:104632990 5'GT 104632990 Upstream 55bp 36785 chr8 19818493 19818493 1 + C G BRCA 19818493 + 19818473 19818513 41 GAACTACTCATGTTGAAGCTCAAATGGAAGAGTGATTCATA GAACTACTCATGTTGAAGCTGAAATGGAAGAGTGATTCATA Direct Gain 0 0.943420332650339 NA NA prediction 0.886840665300679 Functional Gain - LPL ENSG00000175445 CDS Human protein_coding chr8:19818493 chr8:19818493 synonymous SNV . 0 21 hm7G_associated_SNPs_39987 0 0 0 0 1 LPL chr8:19818412 3'AG 19818412 Downstream 82bp 36786 chr3 36570431 36570431 1 + T G LGG 36570431 + 36570411 36570451 41 TTTTAGATGTGTTAGAACCTTCATTGGGTGTAAGGAACAGG TTTTAGATGTGTTAGAACCTGCATTGGGTGTAAGGAACAGG Direct Gain 0 0.943404046425202 NA NA prediction 0.886808092850404 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36570431 chr3:36570431 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39988 0 0 0 0 2 STAC chr3:36570340 3'AG 36570340 Downstream 92bp 36787 chr3 36570431 36570431 1 + T G LGG 36570431 + 36570411 36570451 41 TTTTAGATGTGTTAGAACCTTCATTGGGTGTAAGGAACAGG TTTTAGATGTGTTAGAACCTGCATTGGGTGTAAGGAACAGG Direct Gain 0 0.943404046425202 NA NA prediction 0.886808092850404 Functional Gain - STAC ENSG00000144681 CDS Human protein_coding chr3:36570431 chr3:36570431 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39988 0 0 0 0 2 STAC chr3:36570477 5'GT 36570477 Upstream 47bp 36788 chr19 49260187 49260187 1 + C G CESC 49260187 + 49260167 49260207 41 CGCTTTCACCCCTTAGGTCTCCTGCAGCTGAAAGCCTTGAA CGCTTTCACCCCTTAGGTCTGCTGCAGCTGAAAGCCTTGAA Direct Gain 0 0.943367501153535 NA NA prediction 0.88673500230707 Functional Gain - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49260187 chr19:49260187 synonymous SNV . 0 21 hm7G_associated_SNPs_39990 0 0 0 0 2 FGF21 chr19:49260183 3'AG 49260183 Downstream 5bp 36789 chr19 49260187 49260187 1 + C G CESC 49260187 + 49260167 49260207 41 CGCTTTCACCCCTTAGGTCTCCTGCAGCTGAAAGCCTTGAA CGCTTTCACCCCTTAGGTCTGCTGCAGCTGAAAGCCTTGAA Direct Gain 0 0.943367501153535 NA NA prediction 0.88673500230707 Functional Gain - FGF21 ENSG00000105550 CDS Human protein_coding chr19:49260187 chr19:49260187 synonymous SNV . 0 21 hm7G_associated_SNPs_39990 0 0 0 0 2 FGF21 chr19:49260286 5'GT 49260286 Upstream 100bp 36790 chr1 29016676 29016676 1 + A G TGCT 29016676 + 29016656 29016696 41 GCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGAT GCAGTAGAAACTCACACGATGCACAAAATTGAAGAAGGGAT Direct Gain 0 0.943347572272401 NA NA prediction 0.886695144544801 Functional Gain - GMEB1 ENSG00000162419 CDS Human protein_coding chr1:29016676 chr1:29016676 nonsynonymous SNV 0.975 1 21 hm7G_associated_SNPs_39991 0 0 1 0 3 GMEB1 chr1:29016586 3'AG 29016586 Downstream 91bp 36791 chr1 29016676 29016676 1 + A G TGCT 29016676 + 29016656 29016696 41 GCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGAT GCAGTAGAAACTCACACGATGCACAAAATTGAAGAAGGGAT Direct Gain 0 0.943347572272401 NA NA prediction 0.886695144544801 Functional Gain - GMEB1 ENSG00000162419 CDS Human protein_coding chr1:29016676 chr1:29016676 nonsynonymous SNV 0.975 1 21 hm7G_associated_SNPs_39991 0 0 1 0 3 GMEB1 chr1:29016616 3'AG 29016616 Downstream 61bp 36792 chr1 29016676 29016676 1 + A G TGCT 29016676 + 29016656 29016696 41 GCAGTAGAAACTCACACGATACACAAAATTGAAGAAGGGAT GCAGTAGAAACTCACACGATGCACAAAATTGAAGAAGGGAT Direct Gain 0 0.943347572272401 NA NA prediction 0.886695144544801 Functional Gain - GMEB1 ENSG00000162419 CDS Human protein_coding chr1:29016676 chr1:29016676 nonsynonymous SNV 0.975 1 21 hm7G_associated_SNPs_39991 0 0 1 0 3 GMEB1 chr1:29016698 5'GT 29016698 Upstream 23bp 36793 chr3 39104575 39104575 1 + A G COAD 39104575 + 39104555 39104595 41 TCGAGATGAAGTGGAGAAGTACAACCGAAATGGAGTCAATG TCGAGATGAAGTGGAGAAGTGCAACCGAAATGGAGTCAATG Direct Gain 0 0.943343140870275 NA NA prediction 0.88668628174055 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39104575 chr3:39104575 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_39992 0 0 1 1 1 WDR48 chr3:39104541 3'AG 39104541 Downstream 35bp 36794 chr9 106885401 106885401 1 + A G GBM 106885401 + 106885381 106885421 41 TTTGTAAGGTATCGCCAACTAAAACAGCAGTGGGAGATGAA TTTGTAAGGTATCGCCAACTGAAACAGCAGTGGGAGATGAA Direct Gain 0 0.943336003478914 NA NA prediction 0.886672006957828 Functional Gain - SMC2 ENSG00000136824 CDS Human protein_coding chr9:106885401 chr9:106885401 synonymous SNV . 0 21 hm7G_associated_SNPs_39993 0 0 1 0 1 SMC2 chr9:106885389 3'AG 106885389 Downstream 13bp 36795 chr16 20796331 20796331 1 + T G UCEC 20796331 + 20796311 20796351 41 AGTTTAAAAGCTTAAAGCACTGTGTGAGTGCTGGGGAACCA AGTTTAAAAGCTTAAAGCACGGTGTGAGTGCTGGGGAACCA Direct Gain 0 0.943291570726925 NA NA prediction 0.886583141453851 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20796331 chr16:20796331 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_39996 0 0 1 0 2 ACSM3 chr16:20796306 3'AG 20796306 Downstream 26bp 36796 chr16 20796331 20796331 1 + T G UCEC 20796331 + 20796311 20796351 41 AGTTTAAAAGCTTAAAGCACTGTGTGAGTGCTGGGGAACCA AGTTTAAAAGCTTAAAGCACGGTGTGAGTGCTGGGGAACCA Direct Gain 0 0.943291570726925 NA NA prediction 0.886583141453851 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20796331 chr16:20796331 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_39996 0 0 1 0 2 ACSM3 chr16:20796429 5'GT 20796429 Upstream 99bp 36797 chr12 64199108 64199108 1 + T G UCEC 64199108 + 64199088 64199128 41 TAGGAACGATTTATGAAAATTCATCCAGACAGGCACTAATG TAGGAACGATTTATGAAAATGCATCCAGACAGGCACTAATG Direct Gain 0 0.943289314081136 NA NA prediction 0.886578628162272 Functional Gain - TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64199108 chr12:64199108 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39997 0 0 1 0 2 TMEM5 chr12:64199014 3'AG 64199014 Downstream 95bp 36798 chr12 64199108 64199108 1 + T G UCEC 64199108 + 64199088 64199128 41 TAGGAACGATTTATGAAAATTCATCCAGACAGGCACTAATG TAGGAACGATTTATGAAAATGCATCCAGACAGGCACTAATG Direct Gain 0 0.943289314081136 NA NA prediction 0.886578628162272 Functional Gain - TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64199108 chr12:64199108 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_39997 0 0 1 0 2 TMEM5 chr12:64199184 5'GT 64199184 Upstream 77bp 36799 chr1 24978993 24978993 1 + C G HNSC 24978993 + 24978973 24979013 41 ACCTTCTCCGGAAAAAAATTCCAAAAAAGAAAAGGAGAAGG ACCTTCTCCGGAAAAAAATTGCAAAAAAGAAAAGGAGAAGG Direct Gain 0 0.943277417294788 NA NA prediction 0.886554834589575 Functional Gain - SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24978993 chr1:24978993 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_39998 0 0 1 1 1 SRRM1 chr1:24978925 3'AG 24978925 Downstream 69bp 36800 chr16 30388008 30388008 1 + C G BLCA 30388008 + 30387988 30388028 41 CCTGAGGGAAAGGGCACCATCAAGAAGAAGTTGTAAGCATC CCTGAGGGAAAGGGCACCATGAAGAAGAAGTTGTAAGCATC Direct Gain 0 0.943276541946922 NA NA prediction 0.886553083893844 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30388008 chr16:30388008 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39999 0 0 0 0 2 MYLPF chr16:30387941 3'AG 30387941 Downstream 68bp 36801 chr16 30388008 30388008 1 + C G BLCA 30388008 + 30387988 30388028 41 CCTGAGGGAAAGGGCACCATCAAGAAGAAGTTGTAAGCATC CCTGAGGGAAAGGGCACCATGAAGAAGAAGTTGTAAGCATC Direct Gain 0 0.943276541946922 NA NA prediction 0.886553083893844 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30388008 chr16:30388008 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_39999 0 0 0 0 2 MYLPF chr16:30388019 5'GT 30388019 Upstream 12bp 36802 chr11 22397575 22397575 1 + A G BRCA 22397575 + 22397555 22397595 41 TGGTCGTTGGCTATTCTCATACTAGAGGGGTAGCAATCTCA TGGTCGTTGGCTATTCTCATGCTAGAGGGGTAGCAATCTCA Direct Gain 0 0.943239760191723 NA NA prediction 0.886479520383447 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22397575 chr11:22397575 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40000 0 0 0 0 2 SLC17A6 chr11:22397528 3'AG 22397528 Downstream 48bp 36803 chr11 22397575 22397575 1 + A G BRCA 22397575 + 22397555 22397595 41 TGGTCGTTGGCTATTCTCATACTAGAGGGGTAGCAATCTCA TGGTCGTTGGCTATTCTCATGCTAGAGGGGTAGCAATCTCA Direct Gain 0 0.943239760191723 NA NA prediction 0.886479520383447 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22397575 chr11:22397575 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40000 0 0 0 0 2 SLC17A6 chr11:22397638 5'GT 22397638 Upstream 64bp 36804 chr1 156902282 156902282 1 + C G CESC 156902282 + 156902262 156902302 41 GCAGTATCAGATGCAGTTCTCCAAGGCCAAGAGTGCATCCA GCAGTATCAGATGCAGTTCTGCAAGGCCAAGAGTGCATCCA Direct Gain 0 0.943214071176476 NA NA prediction 0.886428142352951 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902282 chr1:156902282 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_40001 0 0 0 0 2 LRRC71 chr1:156902216 3'AG 156902216 Downstream 67bp 36805 chr1 156902282 156902282 1 + C G CESC 156902282 + 156902262 156902302 41 GCAGTATCAGATGCAGTTCTCCAAGGCCAAGAGTGCATCCA GCAGTATCAGATGCAGTTCTGCAAGGCCAAGAGTGCATCCA Direct Gain 0 0.943214071176476 NA NA prediction 0.886428142352951 Functional Gain - LRRC71 ENSG00000160838 CDS Human protein_coding chr1:156902282 chr1:156902282 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_40001 0 0 0 0 2 LRRC71 chr1:156902337 5'GT 156902337 Upstream 56bp 36806 chr5 169031117 169031117 1 + C G HNSC 169031117 + 169031097 169031137 41 TAAAGAAGGAAAAGAAACTTCAAGCAAATTGGAAAAAGAAA TAAAGAAGGAAAAGAAACTTGAAGCAAATTGGAAAAAGAAA Direct Gain 0 0.943207560936619 NA NA prediction 0.886415121873239 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169031117 chr5:169031117 stopgain 0.996 0 21 hm7G_associated_SNPs_40002 0 0 1 0 1 SPDL1 chr5:169031064 3'AG 169031064 Downstream 54bp 36807 chr12 118838466 118838466 1 + T G UCEC 118838466 + 118838446 118838486 41 ATTCCATTCTTGCCACAGATTCTATGGAGGTGAAACCTATC ATTCCATTCTTGCCACAGATGCTATGGAGGTGAAACCTATC Direct Gain 0 0.943161126792562 NA NA prediction 0.886322253585125 Functional Gain - SUDS3 ENSG00000111707 CDS Human protein_coding chr12:118838466 chr12:118838466 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40003 0 0 1 0 1 SUDS3 chr12:118838464 3'AG 118838464 Downstream 3bp 36808 chr1 45806765 45806765 1 + A G rs201286810 45806765 + 45806745 45806785 41 GTGGTGTCAGCAAAAGCACAACATCTGGGGAGGAGCTAGTA GTGGTGTCAGCAAAAGCACAGCATCTGGGGAGGAGCTAGTA Direct Gain 0 0.943149725027322 NA NA prediction 0.886299450054645 Functional Gain - TOE1 ENSG00000132773 CDS Human protein_coding chr1:45806765 chr1:45806765 nonsynonymous SNV 0.710 0 21 hm7G_associated_SNPs_40004 0 0 0 1 1 TOE1 chr1:45806745 3'AG 45806745 Downstream 21bp 36809 chr12 120750454 120750454 1 + C G CESC 120750454 + 120750434 120750474 41 GGCCATCTGAAACCAGATGTCGTTTTCTTCGGGGACACAGT GGCCATCTGAAACCAGATGTGGTTTTCTTCGGGGACACAGT Direct Gain 0 0.9431453121835 NA NA prediction 0.886290624367 Functional Gain - SIRT4 ENSG00000089163 CDS Human protein_coding chr12:120750454 chr12:120750454 synonymous SNV . 0 21 hm7G_associated_SNPs_40005 0 0 0 0 1 SIRT4 chr12:120750553 5'GT 120750553 Upstream 100bp 36810 chr19 44605359 44605359 1 + C G LUAD 44605359 + 44605339 44605379 41 TGGATGATGAAGACAGCAATCCAAAGGGAAGGGAATTCAGG TGGATGATGAAGACAGCAATGCAAAGGGAAGGGAATTCAGG Direct Gain 0 0.943122532568679 NA NA prediction 0.886245065137359 Functional Gain - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44605359 chr19:44605359 nonsynonymous SNV 0.027 1 21 hm7G_associated_SNPs_40006 0 0 1 0 2 ZNF224 chr19:44605286 3'AG 44605286 Downstream 74bp 36811 chr19 44605359 44605359 1 + C G LUAD 44605359 + 44605339 44605379 41 TGGATGATGAAGACAGCAATCCAAAGGGAAGGGAATTCAGG TGGATGATGAAGACAGCAATGCAAAGGGAAGGGAATTCAGG Direct Gain 0 0.943122532568679 NA NA prediction 0.886245065137359 Functional Gain - ZNF224 ENSG00000267680 CDS Human protein_coding chr19:44605359 chr19:44605359 nonsynonymous SNV 0.027 1 21 hm7G_associated_SNPs_40006 0 0 1 0 2 ZNF224 chr19:44605378 5'GT 44605378 Upstream 20bp 36812 chr12 16189226 16189226 1 + C G BLCA 16189226 + 16189206 16189246 41 ATTCCCTTGCTTGGCTCTCTCTTGTAAAGGAGGAGCTTGGA ATTCCCTTGCTTGGCTCTCTGTTGTAAAGGAGGAGCTTGGA Direct Gain 0 0.943044936862264 NA NA prediction 0.886089873724529 Functional Gain - DERA ENSG00000023697 CDS Human protein_coding chr12:16189226 chr12:16189226 nonsynonymous SNV 0.696 3 21 hm7G_associated_SNPs_40008 0 0 1 0 2 DERA chr12:16189166 3'AG 16189166 Downstream 61bp 36813 chr12 16189226 16189226 1 + C G BLCA 16189226 + 16189206 16189246 41 ATTCCCTTGCTTGGCTCTCTCTTGTAAAGGAGGAGCTTGGA ATTCCCTTGCTTGGCTCTCTGTTGTAAAGGAGGAGCTTGGA Direct Gain 0 0.943044936862264 NA NA prediction 0.886089873724529 Functional Gain - DERA ENSG00000023697 CDS Human protein_coding chr12:16189226 chr12:16189226 nonsynonymous SNV 0.696 3 21 hm7G_associated_SNPs_40008 0 0 1 0 2 DERA chr12:16189315 5'GT 16189315 Upstream 90bp 36814 chr19 4251044 4251044 1 + A G OV 4251044 + 4251024 4251064 41 GTGTAAGACGTGCGGAGAATACATCTACAAGGGGAAGAAAT GTGTAAGACGTGCGGAGAATGCATCTACAAGGGGAAGAAAT Direct Gain 0 0.943034405804635 NA NA prediction 0.88606881160927 Functional Gain - CCDC94 ENSG00000105248 CDS Human protein_coding chr19:4251044 chr19:4251044 nonsynonymous SNV 0.936 4 21 hm7G_associated_SNPs_40009 0 0 0 0 1 CCDC94 chr19:4251024 3'AG 4251024 Downstream 21bp 36815 chr10 96350194 96350194 1 + A G LUAD 96350194 + 96350174 96350214 41 AAACAATTGAGTTAAGTCCTACTGGTCGACCAAAACGACGA AAACAATTGAGTTAAGTCCTGCTGGTCGACCAAAACGACGA Direct Gain 0 0.943031643198466 NA NA prediction 0.886063286396931 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96350194 chr10:96350194 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_40010 0 0 1 0 1 HELLS chr10:96350170 3'AG 96350170 Downstream 25bp 36816 chr3 157160198 157160198 1 + T G UCEC 157160198 + 157160178 157160218 41 CCAATGCGTTCCAAGAAGATTTTTGGAAGCGTGCATCCAGT CCAATGCGTTCCAAGAAGATGTTTGGAAGCGTGCATCCAGT Direct Gain 0 0.943013807325354 NA NA prediction 0.886027614650707 Functional Gain - PTX3 ENSG00000163661 CDS Human protein_coding chr3:157160198 chr3:157160198 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40011 0 0 0 0 1 PTX3 chr3:157160155 3'AG 157160155 Downstream 44bp 36817 chr7 24708212 24708212 1 + A G UCEC 24708212 + 24708192 24708232 41 TTGATAGGAGCTCAAGGTGTAGGCCGAAGAAGCTTGAAAAA TTGATAGGAGCTCAAGGTGTGGGCCGAAGAAGCTTGAAAAA Direct Gain 0 0.942984761174603 NA NA prediction 0.885969522349206 Functional Gain - MPP6 ENSG00000105926 CDS Human protein_coding chr7:24708212 chr7:24708212 synonymous SNV . 0 21 hm7G_associated_SNPs_40012 0 0 1 0 2 MPP6 chr7:24708118 3'AG 24708118 Downstream 95bp 36818 chr7 24708212 24708212 1 + A G UCEC 24708212 + 24708192 24708232 41 TTGATAGGAGCTCAAGGTGTAGGCCGAAGAAGCTTGAAAAA TTGATAGGAGCTCAAGGTGTGGGCCGAAGAAGCTTGAAAAA Direct Gain 0 0.942984761174603 NA NA prediction 0.885969522349206 Functional Gain - MPP6 ENSG00000105926 CDS Human protein_coding chr7:24708212 chr7:24708212 synonymous SNV . 0 21 hm7G_associated_SNPs_40012 0 0 1 0 2 MPP6 chr7:24708279 5'GT 24708279 Upstream 68bp 36819 chr11 5625784 5625784 1 + A G rs3751005 5625784 + 5625764 5625804 41 GAGAAGTTTCAGGAGTCTCTAAAGAAGCTGAAGAACGAGGA GAGAAGTTTCAGGAGTCTCTGAAGAAGCTGAAGAACGAGGA Direct Gain 0 0.94297746199066 NA NA prediction 0.885954923981321 Functional Gain - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5625784 chr11:5625784 synonymous SNV . 0 21 hm7G_associated_SNPs_40013 0 0 0 0 1 TRIM6;TRIM6-TRIM34 chr11:5625764 3'AG 5625764 Downstream 21bp 36820 chr1 15752415 15752415 1 + C G LUSC 15752415 + 15752395 15752435 41 GACCTGATGGAGCTAAAACTCATGATGGAGAAACTTGGGGC GACCTGATGGAGCTAAAACTGATGATGGAGAAACTTGGGGC Direct Gain 0 0.942972506870981 NA NA prediction 0.885945013741961 Functional Gain - EFHD2 ENSG00000142634 CDS Human protein_coding chr1:15752415 chr1:15752415 synonymous SNV . 0 21 hm7G_associated_SNPs_40014 0 0 1 0 2 EFHD2 chr1:15752367 3'AG 15752367 Downstream 49bp 36821 chr1 15752415 15752415 1 + C G LUSC 15752415 + 15752395 15752435 41 GACCTGATGGAGCTAAAACTCATGATGGAGAAACTTGGGGC GACCTGATGGAGCTAAAACTGATGATGGAGAAACTTGGGGC Direct Gain 0 0.942972506870981 NA NA prediction 0.885945013741961 Functional Gain - EFHD2 ENSG00000142634 CDS Human protein_coding chr1:15752415 chr1:15752415 synonymous SNV . 0 21 hm7G_associated_SNPs_40014 0 0 1 0 2 EFHD2 chr1:15752514 5'GT 15752514 Upstream 100bp 36822 chr3 50685414 50685414 1 + C G BLCA 50685414 + 50685394 50685434 41 ACCTCTAACAACCGGCTCCTCAACAAGAGGAGAAAAAAGCA ACCTCTAACAACCGGCTCCTGAACAAGAGGAGAAAAAAGCA Direct Gain 0 0.942935104766358 NA NA prediction 0.885870209532716 Functional Gain - MAPKAPK3 ENSG00000114738 CDS Human protein_coding chr3:50685414 chr3:50685414 synonymous SNV . 0 21 hm7G_associated_SNPs_40015 0 0 1 0 1 MAPKAPK3 chr3:50685325 3'AG 50685325 Downstream 90bp 36823 chr20 61430905 61430905 1 + C G LUAD 61430905 + 61430885 61430925 41 GGGTGCAAAGAAGGCGCAGACAAGCGGAAGCGCAGCCGGGT GGGTGCAAAGAAGGCGCAGAGAAGCGGAAGCGCAGCCGGGT Direct Gain 0 0.942911690529398 NA NA prediction 0.885823381058796 Functional Gain - MRGBP ENSG00000101189 CDS Human protein_coding chr20:61430905 chr20:61430905 nonsynonymous SNV 0.984 1 21 hm7G_associated_SNPs_40016 0 0 0 0 1 MRGBP chr20:61430808 3'AG 61430808 Downstream 98bp 36824 chr9 34661553 34661553 1 + A G rs201595731 34661553 + 34661533 34661573 41 TCTGTCTTGCTGGTGTGGATAGAAACCAGGCAGGACAGTAG TCTGTCTTGCTGGTGTGGATGGAAACCAGGCAGGACAGTAG Direct Gain 0 0.942878258358574 NA NA prediction 0.885756516717148 Functional Gain - IL11RA ENSG00000137070 UTR3 Human protein_coding chr9:34661553 chr9:34661553 . . 0 21 hm7G_associated_SNPs_40018 0 0 1 0 1 IL11RA chr9:34661479 3'AG 34661479 Downstream 75bp 36825 chr14 76455252 76455252 1 + C G LUSC 76455252 + 76455232 76455272 41 CCAAGATGGGTCGCCGAGCTCAACAGGAGTCAGCGCAGGCC CCAAGATGGGTCGCCGAGCTGAACAGGAGTCAGCGCAGGCC Direct Gain 0 0.942853033565415 NA NA prediction 0.88570606713083 Functional Gain - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76455252 chr14:76455252 nonsynonymous SNV 0.985 0 21 hm7G_associated_SNPs_40019 0 0 1 0 2 IFT43 chr14:76455228 3'AG 76455228 Downstream 25bp 36826 chr14 76455252 76455252 1 + C G LUSC 76455252 + 76455232 76455272 41 CCAAGATGGGTCGCCGAGCTCAACAGGAGTCAGCGCAGGCC CCAAGATGGGTCGCCGAGCTGAACAGGAGTCAGCGCAGGCC Direct Gain 0 0.942853033565415 NA NA prediction 0.88570606713083 Functional Gain - IFT43 ENSG00000119650 CDS Human protein_coding chr14:76455252 chr14:76455252 nonsynonymous SNV 0.985 0 21 hm7G_associated_SNPs_40019 0 0 1 0 2 IFT43 chr14:76455320 5'GT 76455320 Upstream 69bp 36827 chr7 115891974 115891974 1 + A G COAD 115891974 + 115891954 115891994 41 TTGGAAGAATGAGAAGCTATACTGTGGCAGACATTACTGTG TTGGAAGAATGAGAAGCTATGCTGTGGCAGACATTACTGTG Direct Gain 0 0.94283688514467 NA NA prediction 0.88567377028934 Functional Gain - TES ENSG00000135269 CDS Human protein_coding chr7:115891974 chr7:115891974 nonsynonymous SNV 0.975 2 21 hm7G_associated_SNPs_40021 0 0 1 0 2 TES chr7:115891918 3'AG 115891918 Downstream 57bp 36828 chr7 115891974 115891974 1 + A G COAD 115891974 + 115891954 115891994 41 TTGGAAGAATGAGAAGCTATACTGTGGCAGACATTACTGTG TTGGAAGAATGAGAAGCTATGCTGTGGCAGACATTACTGTG Direct Gain 0 0.94283688514467 NA NA prediction 0.88567377028934 Functional Gain - TES ENSG00000135269 CDS Human protein_coding chr7:115891974 chr7:115891974 nonsynonymous SNV 0.975 2 21 hm7G_associated_SNPs_40021 0 0 1 0 2 TES chr7:115892029 5'GT 115892029 Upstream 56bp 36829 chr4 190876195 190876195 1 + C G rs7684300 190876195 + 190876175 190876215 41 ATGTTATTAATGTACAGAATCGCCCTGAAGTCTGGCTATGG ATGTTATTAATGTACAGAATGGCCCTGAAGTCTGGCTATGG Direct Gain 0 0.942791643381944 NA NA prediction 0.885583286763887 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190876195 chr4:190876195 nonsynonymous SNV 0.910 4 21 hm7G_associated_SNPs_40025 0 0 1 0 1 FRG1 chr4:190876192 3'AG 190876192 Downstream 4bp 36830 chr17 35830526 35830526 1 + C G CESC 35830526 + 35830506 35830546 41 GCCAGAACCTACGATCACCTCAAGAAGACACGGGAGGAAGA GCCAGAACCTACGATCACCTGAAGAAGACACGGGAGGAAGA Direct Gain 0 0.942786209410147 NA NA prediction 0.885572418820295 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35830526 chr17:35830526 synonymous SNV . 0 21 hm7G_associated_SNPs_40026 0 0 0 0 1 TADA2A chr17:35830504 3'AG 35830504 Downstream 23bp 36831 chr1 192627355 192627355 1 + A G LUAD 192627355 + 192627335 192627375 41 TCCAGTAGTCTATGCAGCATATTTAAAAATGGAGCACAGTG TCCAGTAGTCTATGCAGCATGTTTAAAAATGGAGCACAGTG Direct Gain 0 0.942734606225953 NA NA prediction 0.885469212451906 Functional Gain - RGS13 ENSG00000127074 CDS Human protein_coding chr1:192627355 chr1:192627355 nonsynonymous SNV 0.972 4 21 hm7G_associated_SNPs_40029 0 0 0 0 1 RGS13 chr1:192627331 3'AG 192627331 Downstream 25bp 36832 chr15 67073389 67073389 1 + A G UCEC 67073389 + 67073369 67073409 41 CCACTGGTGCAGCGTGGCGTACTGGGAGCACCGGACGCGCG CCACTGGTGCAGCGTGGCGTGCTGGGAGCACCGGACGCGCG Direct Gain 0 0.94272311510442 NA NA prediction 0.885446230208839 Functional Gain - SMAD6 ENSG00000137834 CDS Human protein_coding chr15:67073389 chr15:67073389 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_40030 0 0 1 0 1 SMAD6 chr15:67073335 3'AG 67073335 Downstream 55bp 36833 chr1 32828367 32828367 1 + C G BLCA 32828367 + 32828347 32828387 41 CATTGGGGAAGGGACCTACTCAAAAGTCAAAGAAGCATTTT CATTGGGGAAGGGACCTACTGAAAAGTCAAAGAAGCATTTT Direct Gain 0 0.942720433010174 NA NA prediction 0.885440866020349 Functional Gain - TSSK3 ENSG00000162526 CDS Human protein_coding chr1:32828367 chr1:32828367 stopgain 1.000 1 21 hm7G_associated_SNPs_40031 0 0 0 0 1 TSSK3 chr1:32828447 5'GT 32828447 Upstream 81bp 36834 chr14 20978721 20978721 1 + A G rs79798350 20978721 + 20978701 20978741 41 GGTTGGGACTTCATATGGCTACAGCAGTCTTGGAGGAGAGT GGTTGGGACTTCATATGGCTGCAGCAGTCTTGGAGGAGAGT Direct Gain 0 0.942693335195271 NA NA prediction 0.885386670390543 Functional Gain - RNASE10 ENSG00000182545 CDS Human protein_coding chr14:20978721 chr14:20978721 nonsynonymous SNV 0.738 0 21 hm7G_associated_SNPs_40034 0 0 0 0 1 RNASE10 chr14:20978626 3'AG 20978626 Downstream 96bp 36835 chr7 39606127 39606127 1 + A G COAD 39606127 + 39606107 39606147 41 GCAGCGGGAATGGCAGAGTAACATGCAAAGACGAGTCAAAG GCAGCGGGAATGGCAGAGTAGCATGCAAAGACGAGTCAAAG Direct Gain 0 0.942630235118034 NA NA prediction 0.885260470236069 Functional Gain - YAE1D1 ENSG00000241127 CDS Human protein_coding chr7:39606127 chr7:39606127 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_40037 0 0 0 0 1 YAE1D1 chr7:39606146 5'GT 39606146 Upstream 20bp 36836 chr2 7023543 7023543 1 + C G HNSC 7023543 + 7023523 7023563 41 CAGGTGGAGAGCCATTTCTTCAAGACCGGGGAGAATACCTG CAGGTGGAGAGCCATTTCTTGAAGACCGGGGAGAATACCTG Direct Gain 0 0.942596606277923 NA NA prediction 0.885193212555846 Functional Gain - RSAD2 ENSG00000134321 CDS Human protein_coding chr2:7023543 chr2:7023543 nonsynonymous SNV 0.003 2 21 hm7G_associated_SNPs_40038 0 0 1 0 1 RSAD2 chr2:7023502 3'AG 7023502 Downstream 42bp 36837 chr18 72247405 72247405 1 + A G LUAD 72247405 + 72247385 72247425 41 ATGTGTTCTCCAAAAGAAATAGTTCCAACAAGATGGTTGTT ATGTGTTCTCCAAAAGAAATGGTTCCAACAAGATGGTTGTT Direct Gain 0 0.942581256690229 NA NA prediction 0.885162513380459 Functional Gain - CNDP1 ENSG00000150656 CDS Human protein_coding chr18:72247405 chr18:72247405 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40039 0 0 0 0 1 CNDP1 chr18:72247366 3'AG 72247366 Downstream 40bp 36838 chr19 806547 806547 1 + C G CESC 806547 + 806527 806567 41 GTATTGCTGGTCAGCAACCTCAACCCAGAGGTACGTGGGCT GTATTGCTGGTCAGCAACCTGAACCCAGAGGTACGTGGGCT Direct Gain 0 0.942538995327656 NA NA prediction 0.885077990655311 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:806547 chr19:806547 synonymous SNV . 0 21 hm7G_associated_SNPs_40040 0 0 1 0 1 PTBP1 chr19:806556 5'GT 806556 Upstream 10bp 36839 chr15 79189395 79189395 1 + C G LUAD 79189395 + 79189375 79189415 41 TGGCTCCTCCTGAGTACCATCGGAAAGCTGTGTGAGAGGCA TGGCTCCTCCTGAGTACCATGGGAAAGCTGTGTGAGAGGCA Direct Gain 0 0.942501612331406 NA NA prediction 0.885003224662812 Functional Gain - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79189395 chr15:79189395 nonsynonymous SNV 0.990 2 21 hm7G_associated_SNPs_40041 0 0 1 0 1 MORF4L1 chr15:79189325 3'AG 79189325 Downstream 71bp 36840 chr5 55083737 55083737 1 + A G BLCA 55083737 + 55083717 55083757 41 GAATAACTGCCAGTCGTTTTAAAGAGTTGCAGGAACCAGAG GAATAACTGCCAGTCGTTTTGAAGAGTTGCAGGAACCAGAG Direct Gain 0 0.942487963258874 NA NA prediction 0.884975926517748 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55083737 chr5:55083737 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40042 0 0 0 0 2 DDX4 chr5:55083674 3'AG 55083674 Downstream 64bp 36841 chr5 55083737 55083737 1 + A G BLCA 55083737 + 55083717 55083757 41 GAATAACTGCCAGTCGTTTTAAAGAGTTGCAGGAACCAGAG GAATAACTGCCAGTCGTTTTGAAGAGTTGCAGGAACCAGAG Direct Gain 0 0.942487963258874 NA NA prediction 0.884975926517748 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55083737 chr5:55083737 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40042 0 0 0 0 2 DDX4 chr5:55083828 5'GT 55083828 Upstream 92bp 36842 chr15 38234396 38234396 1 + A G SKCM 38234396 + 38234376 38234416 41 TTGTTTCTCTTTGAAGAAGTACCAGGAAACGTTGAAGAAAA TTGTTTCTCTTTGAAGAAGTGCCAGGAAACGTTGAAGAAAA Direct Gain 0 0.94248736829939 NA NA prediction 0.88497473659878 Functional Gain - TMCO5A ENSG00000166069 CDS Human protein_coding chr15:38234396 chr15:38234396 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40043 0 0 0 0 1 TMCO5A chr15:38234392 3'AG 38234392 Downstream 5bp 36843 chrX 154261807 154261807 1 + T G COAD 154261807 + 154261787 154261827 41 TAGCGTGGCAACCCAGCTGTTCATTGGAGGTGTCACTGGAT TAGCGTGGCAACCCAGCTGTGCATTGGAGGTGTCACTGGAT Direct Gain 0 0.942416843336527 NA NA prediction 0.884833686673054 Functional Gain - FUNDC2 ENSG00000165775 CDS Human protein_coding chrX:154261807 chrX:154261807 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40049 0 0 1 0 1 FUNDC2 chrX:154261828 5'GT 154261828 Upstream 22bp 36844 chr10 82348391 82348391 1 + A G SKCM 82348391 + 82348371 82348411 41 CCCATGACATTTTAGAGGAAAGAGGAAGAGGAGAGGAAGCG CCCATGACATTTTAGAGGAAGGAGGAAGAGGAGAGGAAGCG Direct Gain 0 0.9423818130597 NA NA prediction 0.884763626119401 Functional Gain - SH2D4B ENSG00000178217 CDS Human protein_coding chr10:82348391 chr10:82348391 synonymous SNV . 0 21 hm7G_associated_SNPs_40050 0 0 0 0 1 SH2D4B chr10:82348386 3'AG 82348386 Downstream 6bp 36845 chr20 60963417 60963417 1 + C G CESC 60963417 + 60963397 60963437 41 CAAGGCCGATGGCATCGTCTCAAAGTAAGGTTGGGGGCTCA CAAGGCCGATGGCATCGTCTGAAAGTAAGGTTGGGGGCTCA Direct Gain 0 0.942318178967293 NA NA prediction 0.884636357934586 Functional Gain - RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963417 chr20:60963417 stopgain 0.965 0 21 hm7G_associated_SNPs_40052 0 0 1 0 2 RPS21 chr20:60963365 3'AG 60963365 Downstream 53bp 36846 chr20 60963417 60963417 1 + C G CESC 60963417 + 60963397 60963437 41 CAAGGCCGATGGCATCGTCTCAAAGTAAGGTTGGGGGCTCA CAAGGCCGATGGCATCGTCTGAAAGTAAGGTTGGGGGCTCA Direct Gain 0 0.942318178967293 NA NA prediction 0.884636357934586 Functional Gain - RPS21 ENSG00000171858 CDS Human protein_coding chr20:60963417 chr20:60963417 stopgain 0.965 0 21 hm7G_associated_SNPs_40052 0 0 1 0 2 RPS21 chr20:60963420 5'GT 60963420 Upstream 4bp 36847 chr16 82104622 82104622 1 + A G LUAD 82104622 + 82104602 82104642 41 GCTTCTTCTTATGACTGACTACAAACAATGCATGGCCGTGA GCTTCTTCTTATGACTGACTGCAAACAATGCATGGCCGTGA Direct Gain 0 0.942265931954365 NA NA prediction 0.884531863908731 Functional Gain - HSD17B2 ENSG00000086696 CDS Human protein_coding chr16:82104622 chr16:82104622 nonsynonymous SNV 0.137 3 21 hm7G_associated_SNPs_40054 0 0 0 0 1 HSD17B2 chr16:82104547 3'AG 82104547 Downstream 76bp 36848 chr19 38871637 38871637 1 + C G BLCA 38871637 + 38871617 38871657 41 GACATCCTGCTCGACACTATCAGGTGCGTAGCGGGGCCGGG GACATCCTGCTCGACACTATGAGGTGCGTAGCGGGGCCGGG Direct Gain 0 0.942244345895664 NA NA prediction 0.884488691791327 Functional Gain - PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871637 chr19:38871637 nonsynonymous SNV 0.934 2 21 hm7G_associated_SNPs_40055 0 0 1 0 2 PSMD8 chr19:38871539 3'AG 38871539 Downstream 99bp 36849 chr19 38871637 38871637 1 + C G BLCA 38871637 + 38871617 38871657 41 GACATCCTGCTCGACACTATCAGGTGCGTAGCGGGGCCGGG GACATCCTGCTCGACACTATGAGGTGCGTAGCGGGGCCGGG Direct Gain 0 0.942244345895664 NA NA prediction 0.884488691791327 Functional Gain - PSMD8 ENSG00000099341 CDS Human protein_coding chr19:38871637 chr19:38871637 nonsynonymous SNV 0.934 2 21 hm7G_associated_SNPs_40055 0 0 1 0 2 PSMD8 chr19:38871639 5'GT 38871639 Upstream 3bp 36850 chr3 52724662 52724662 1 + T G CESC 52724662 + 52724642 52724682 41 AAATTATTTGAAGAAAGAATTGCCAACAGTGGTGTTCAGAG AAATTATTTGAAGAAAGAATGGCCAACAGTGGTGTTCAGAG Direct Gain 0 0.942221076888719 NA NA prediction 0.884442153777438 Functional Gain - GNL3 ENSG00000163938 CDS Human protein_coding chr3:52724662 chr3:52724662 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40056 0 0 1 0 1 GNL3 chr3:52724608 3'AG 52724608 Downstream 55bp 36851 chr16 2011519 2011519 1 + C G HNSC 2011519 + 2011499 2011539 41 AAAGTCGACCAAGAAATTATCAACATTATGCAGGATCGGCT AAAGTCGACCAAGAAATTATGAACATTATGCAGGATCGGCT Direct Gain 0 0.942220129999521 NA NA prediction 0.884440259999042 Functional Gain - NDUFB10 ENSG00000140990 CDS Human protein_coding chr16:2011519 chr16:2011519 nonsynonymous SNV 0.101 1 21 hm7G_associated_SNPs_40057 0 0 1 0 1 NDUFB10 chr16:2011498 3'AG 2011498 Downstream 22bp 36852 chr14 35579812 35579812 1 - T C UCEC 35579812 - 35579792 35579832 41 CCTGCTGAAGATGAAGTCTTACTACAGAAATTAAGAGAGGA CCTGCTGAAGATGAAGTCTTGCTACAGAAATTAAGAGAGGA Direct Gain 0 0.942215395559707 NA NA prediction 0.884430791119413 Functional Gain - PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579812 chr14:35579812 synonymous SNV . 0 21 hm7G_associated_SNPs_40058 0 0 1 0 2 PPP2R3C chr14:35579731 5'GT 35579731 Upstream 82bp 36853 chr14 35579812 35579812 1 - T C UCEC 35579812 - 35579792 35579832 41 CCTGCTGAAGATGAAGTCTTACTACAGAAATTAAGAGAGGA CCTGCTGAAGATGAAGTCTTGCTACAGAAATTAAGAGAGGA Direct Gain 0 0.942215395559707 NA NA prediction 0.884430791119413 Functional Gain - PPP2R3C ENSG00000092020 CDS Human protein_coding chr14:35579812 chr14:35579812 synonymous SNV . 0 21 hm7G_associated_SNPs_40058 0 0 1 0 2 PPP2R3C chr14:35579835 3'AG 35579835 Downstream 24bp 36854 chr6 33258577 33258577 1 + C G BLCA 33258577 + 33258557 33258597 41 GCTCAGCTGCAGCAGGAGTTCCAGCGGGCCCAGGCAGCAAA GCTCAGCTGCAGCAGGAGTTGCAGCGGGCCCAGGCAGCAAA Direct Gain 0 0.942207912928323 NA NA prediction 0.884415825856645 Functional Gain - PFDN6 ENSG00000204220 CDS Human protein_coding chr6:33258577 chr6:33258577 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_40059 0 0 1 0 1 PFDN6 chr6:33258493 3'AG 33258493 Downstream 85bp 36855 chr19 40477127 40477127 1 + C G ESCA 40477127 + 40477107 40477147 41 ACTATGGAGGAGATAGGCATCTTGGTGGAGAAGGCTCAGGT ACTATGGAGGAGATAGGCATGTTGGTGGAGAAGGCTCAGGT Direct Gain 0 0.942136039566878 NA NA prediction 0.884272079133755 Functional Gain - PSMC4 ENSG00000013275 CDS Human protein_coding chr19:40477127 chr19:40477127 nonsynonymous SNV 0.991 2 21 hm7G_associated_SNPs_40061 0 0 1 0 1 PSMC4 chr19:40477145 5'GT 40477145 Upstream 19bp 36856 chr2 207824396 207824396 1 + C G LUAD 207824396 + 207824376 207824416 41 AACTCAAGTATACGCAAGCTCCTTAGGAACCTGGACTTCTA AACTCAAGTATACGCAAGCTGCTTAGGAACCTGGACTTCTA Direct Gain 0 0.942055573309734 NA NA prediction 0.884111146619469 Functional Gain - CPO ENSG00000144410 CDS Human protein_coding chr2:207824396 chr2:207824396 synonymous SNV . 0 21 hm7G_associated_SNPs_40062 0 0 0 0 2 CPO chr2:207824355 3'AG 207824355 Downstream 42bp 36857 chr2 207824396 207824396 1 + C G LUAD 207824396 + 207824376 207824416 41 AACTCAAGTATACGCAAGCTCCTTAGGAACCTGGACTTCTA AACTCAAGTATACGCAAGCTGCTTAGGAACCTGGACTTCTA Direct Gain 0 0.942055573309734 NA NA prediction 0.884111146619469 Functional Gain - CPO ENSG00000144410 CDS Human protein_coding chr2:207824396 chr2:207824396 synonymous SNV . 0 21 hm7G_associated_SNPs_40062 0 0 0 0 2 CPO chr2:207824465 5'GT 207824465 Upstream 70bp 36858 chr14 100795778 100795778 1 + C G BLCA 100795778 + 100795758 100795798 41 GCCACCCCCATGGACGTGATCAAGTCGAGACTGCAGGCAGA GCCACCCCCATGGACGTGATGAAGTCGAGACTGCAGGCAGA Direct Gain 0 0.942046861362372 NA NA prediction 0.884093722724744 Functional Gain - SLC25A47 ENSG00000140107 CDS Human protein_coding chr14:100795778 chr14:100795778 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40063 0 0 0 0 1 SLC25A47 chr14:100795702 3'AG 100795702 Downstream 77bp 36859 chr11 65113772 65113772 1 + A G COAD 65113772 + 65113752 65113792 41 GATGGCGGCAGTGAAGACATACCGCTGGCAGTGCATCGAGT GATGGCGGCAGTGAAGACATGCCGCTGGCAGTGCATCGAGT Direct Gain 0 0.942041791738344 NA NA prediction 0.884083583476687 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113772 chr11:65113772 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_40064 0 0 1 0 2 DPF2 chr11:65113718 3'AG 65113718 Downstream 55bp 36860 chr11 65113772 65113772 1 + A G COAD 65113772 + 65113752 65113792 41 GATGGCGGCAGTGAAGACATACCGCTGGCAGTGCATCGAGT GATGGCGGCAGTGAAGACATGCCGCTGGCAGTGCATCGAGT Direct Gain 0 0.942041791738344 NA NA prediction 0.884083583476687 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65113772 chr11:65113772 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_40064 0 0 1 0 2 DPF2 chr11:65113830 5'GT 65113830 Upstream 59bp 36861 chr14 68191897 68191897 1 + C G BLCA 68191897 + 68191877 68191917 41 CCGAGTGGATACAAAGAACTCCCAGGTGCTGGTGCGGAAAT CCGAGTGGATACAAAGAACTGCCAGGTGCTGGTGCGGAAAT Direct Gain 0 0.941954346914034 NA NA prediction 0.883908693828068 Functional Gain - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191897 chr14:68191897 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40065 0 0 0 0 2 RDH12 chr14:68191816 3'AG 68191816 Downstream 82bp 36862 chr14 68191897 68191897 1 + C G BLCA 68191897 + 68191877 68191917 41 CCGAGTGGATACAAAGAACTCCCAGGTGCTGGTGCGGAAAT CCGAGTGGATACAAAGAACTGCCAGGTGCTGGTGCGGAAAT Direct Gain 0 0.941954346914034 NA NA prediction 0.883908693828068 Functional Gain - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68191897 chr14:68191897 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40065 0 0 0 0 2 RDH12 chr14:68191971 5'GT 68191971 Upstream 75bp 36863 chrX 135730549 135730549 1 + A G LUAD 135730549 + 135730529 135730569 41 TTTTTGCTGTGTATCTTCATAGAAGGTTGGACAAGGTAAGA TTTTTGCTGTGTATCTTCATGGAAGGTTGGACAAGGTAAGA Direct Gain 0 0.941936437180995 NA NA prediction 0.88387287436199 Functional Gain - CD40LG ENSG00000102245 CDS Human protein_coding chrX:135730549 chrX:135730549 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40066 0 0 0 0 1 CD40LG chrX:135730563 5'GT 135730563 Upstream 15bp 36864 chr10 13152294 13152294 1 + C G CESC 13152294 + 13152274 13152314 41 AAGCCATGAAGCTAAATAATCAAGCCATGAAAGGGAGATTT AAGCCATGAAGCTAAATAATGAAGCCATGAAAGGGAGATTT Direct Gain 0 0.941884387896505 NA NA prediction 0.883768775793009 Functional Gain - OPTN ENSG00000123240 CDS Human protein_coding chr10:13152294 chr10:13152294 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40068 0 0 1 0 1 OPTN chr10:13152274 3'AG 13152274 Downstream 21bp 36865 chr4 74607675 74607675 1 + T G COAD 74607675 + 74607655 74607695 41 TCTTATTTCAGTGTAAAGCTTTCTGATGGAAGAGAGCTCTG TCTTATTTCAGTGTAAAGCTGTCTGATGGAAGAGAGCTCTG Direct Gain 0 0.941884050001065 NA NA prediction 0.88376810000213 Functional Gain - CXCL8 ENSG00000169429 CDS Human protein_coding chr4:74607675 chr4:74607675 synonymous SNV . 0 21 hm7G_associated_SNPs_40069 0 0 1 0 1 CXCL8 chr4:74607749 5'GT 74607749 Upstream 75bp 36866 chr2 61147190 61147190 1 + A G UCEC 61147190 + 61147170 61147210 41 AATCAGATACTTACGGCAATAAAGCAAAGAAACAAAAGACA AATCAGATACTTACGGCAATGAAGCAAAGAAACAAAAGACA Direct Gain 0 0.94187719468689 NA NA prediction 0.883754389373779 Functional Gain - REL ENSG00000162924 CDS Human protein_coding chr2:61147190 chr2:61147190 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40070 0 0 1 0 2 REL chr2:61147176 3'AG 61147176 Downstream 15bp 36867 chr2 61147190 61147190 1 + A G UCEC 61147190 + 61147170 61147210 41 AATCAGATACTTACGGCAATAAAGCAAAGAAACAAAAGACA AATCAGATACTTACGGCAATGAAGCAAAGAAACAAAAGACA Direct Gain 0 0.94187719468689 NA NA prediction 0.883754389373779 Functional Gain - REL ENSG00000162924 CDS Human protein_coding chr2:61147190 chr2:61147190 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40070 0 0 1 0 2 REL chr2:61147244 5'GT 61147244 Upstream 55bp 36868 chr10 94454330 94454330 1 + A G LIHC 94454330 + 94454310 94454350 41 CCTCAAAGCAATAAAAAAGAAGAACTGGAAAGTTTGGACAG CCTCAAAGCAATAAAAAAGAGGAACTGGAAAGTTTGGACAG Direct Gain 0 0.941873527794832 NA NA prediction 0.883747055589663 Functional Gain - HHEX ENSG00000152804 CDS Human protein_coding chr10:94454330 chr10:94454330 synonymous SNV . 0 21 hm7G_associated_SNPs_40071 0 0 1 0 1 HHEX chr10:94454304 3'AG 94454304 Downstream 27bp 36869 chr11 213302 213302 1 + A G UCEC 213302 + 213282 213322 41 CACCCACTGGGAAACAGCATAAACCCTGTGACCGGGAGGGT CACCCACTGGGAAACAGCATGAACCCTGTGACCGGGAGGGT Direct Gain 0 0.941862557605624 NA NA prediction 0.883725115211249 Functional Gain - RIC8A ENSG00000177963 CDS Human protein_coding chr11:213302 chr11:213302 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_40072 0 0 1 0 1 RIC8A chr11:213299 3'AG 213299 Downstream 4bp 36870 chr17 55072947 55072947 1 + A G HNSC 55072947 + 55072927 55072967 41 TGCCGTAAATAAGGGGCTCTACAGAGAGGCCACAGAGCTGT TGCCGTAAATAAGGGGCTCTGCAGAGAGGCCACAGAGCTGT Direct Gain 0 0.941840544607895 NA NA prediction 0.88368108921579 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55072947 chr17:55072947 nonsynonymous SNV 0.697 5 21 hm7G_associated_SNPs_40073 0 0 1 2 2 SCPEP1 chr17:55072868 3'AG 55072868 Downstream 80bp 36871 chr17 55072947 55072947 1 + A G HNSC 55072947 + 55072927 55072967 41 TGCCGTAAATAAGGGGCTCTACAGAGAGGCCACAGAGCTGT TGCCGTAAATAAGGGGCTCTGCAGAGAGGCCACAGAGCTGT Direct Gain 0 0.941840544607895 NA NA prediction 0.88368108921579 Functional Gain - SCPEP1 ENSG00000121064 CDS Human protein_coding chr17:55072947 chr17:55072947 nonsynonymous SNV 0.697 5 21 hm7G_associated_SNPs_40073 0 0 1 2 2 SCPEP1 chr17:55072996 5'GT 55072996 Upstream 50bp 36872 chr6 57048591 57048591 1 + T G SKCM 57048591 + 57048571 57048611 41 TTTAGGAGAAAGAGAAGAATTAAATCTGACTGCAAACCGTT TTTAGGAGAAAGAGAAGAATGAAATCTGACTGCAAACCGTT Direct Gain 0 0.94182696835357 NA NA prediction 0.88365393670714 Functional Gain - BAG2 ENSG00000112208 CDS Human protein_coding chr6:57048591 chr6:57048591 stopgain 1.000 1 21 hm7G_associated_SNPs_40074 0 0 1 0 1 BAG2 chr6:57048576 3'AG 57048576 Downstream 16bp 36873 chr3 72971379 72971379 1 + A G GBM 72971379 + 72971359 72971399 41 GCCAGTGGCCTGACTCATATACAAAGAAGTTTGAGCACAGA GCCAGTGGCCTGACTCATATGCAAAGAAGTTTGAGCACAGA Direct Gain 0 0.941809162551928 NA NA prediction 0.883618325103857 Functional Gain - GXYLT2 ENSG00000172986 CDS Human protein_coding chr3:72971379 chr3:72971379 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_40076 0 0 1 0 1 GXYLT2 chr3:72971355 3'AG 72971355 Downstream 25bp 36874 chr19 2410385 2410385 1 + C G LUSC 2410385 + 2410365 2410405 41 CCTGGACGGGAAGGTGGACTCCTGCCAGGTGAGCCCCCGAT CCTGGACGGGAAGGTGGACTGCTGCCAGGTGAGCCCCCGAT Direct Gain 0 0.941784181358492 NA NA prediction 0.883568362716984 Functional Gain - TMPRSS9 ENSG00000178297 CDS Human protein_coding chr19:2410385 chr19:2410385 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40077 0 0 0 0 1 TMPRSS9 chr19:2410392 5'GT 2410392 Upstream 8bp 36875 chr10 96256843 96256843 1 + C G rs12413253 96256843 + 96256823 96256863 41 GCACATAAAAGAAAAAGAATCATGAAAGAACGATTTAAGCA GCACATAAAAGAAAAAGAATGATGAAAGAACGATTTAAGCA Direct Gain 0 0.941784006898846 NA NA prediction 0.883568013797693 Functional Gain - TBC1D12 ENSG00000108239 CDS Human protein_coding chr10:96256843 chr10:96256843 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40078 0 0 0 0 2 TBC1D12 chr10:96256812 3'AG 96256812 Downstream 32bp 36876 chr10 96256843 96256843 1 + C G rs12413253 96256843 + 96256823 96256863 41 GCACATAAAAGAAAAAGAATCATGAAAGAACGATTTAAGCA GCACATAAAAGAAAAAGAATGATGAAAGAACGATTTAAGCA Direct Gain 0 0.941784006898846 NA NA prediction 0.883568013797693 Functional Gain - TBC1D12 ENSG00000108239 CDS Human protein_coding chr10:96256843 chr10:96256843 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40078 0 0 0 0 2 TBC1D12 chr10:96256929 5'GT 96256929 Upstream 87bp 36877 chr10 62539949 62539949 1 + A G COAD 62539949 + 62539929 62539969 41 AGATTATACCAAAATAGAGAAAATTGGAGAAGGTGAGTGGT AGATTATACCAAAATAGAGAGAATTGGAGAAGGTGAGTGGT Direct Gain 0 0.941777223638681 NA NA prediction 0.883554447277362 Functional Gain - CDK1 ENSG00000170312 CDS Human protein_coding chr10:62539949 chr10:62539949 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40079 0 0 1 0 2 CDK1 chr10:62539899 3'AG 62539899 Downstream 51bp 36878 chr10 62539949 62539949 1 + A G COAD 62539949 + 62539929 62539969 41 AGATTATACCAAAATAGAGAAAATTGGAGAAGGTGAGTGGT AGATTATACCAAAATAGAGAGAATTGGAGAAGGTGAGTGGT Direct Gain 0 0.941777223638681 NA NA prediction 0.883554447277362 Functional Gain - CDK1 ENSG00000170312 CDS Human protein_coding chr10:62539949 chr10:62539949 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40079 0 0 1 0 2 CDK1 chr10:62539960 5'GT 62539960 Upstream 12bp 36879 chr22 40365525 40365525 1 + C G rs5757821 40365525 + 40365505 40365545 41 CACACAGACCCAGTGCAGCTCCAGGCGGCAGGGGTATGGGA CACACAGACCCAGTGCAGCTGCAGGCGGCAGGGGTATGGGA Direct Gain 0 0.941750618233119 NA NA prediction 0.883501236466239 Functional Gain - GRAP2 ENSG00000100351 CDS Human protein_coding chr22:40365525 chr22:40365525 synonymous SNV . 0 21 hm7G_associated_SNPs_40081 0 0 1 0 1 GRAP2 chr22:40365537 5'GT 40365537 Upstream 13bp 36880 chr1 173455474 173455474 1 + T G UCEC 173455474 + 173455454 173455494 41 GGCAGGAACTTTGATGAGATTCTCAGGGTAGTCATCTCTCT GGCAGGAACTTTGATGAGATGCTCAGGGTAGTCATCTCTCT Direct Gain 0 0.941687549393006 NA NA prediction 0.883375098786011 Functional Gain - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173455474 chr1:173455474 nonsynonymous SNV 0.990 4 21 hm7G_associated_SNPs_40082 0 0 1 0 2 PRDX6 chr1:173455394 3'AG 173455394 Downstream 81bp 36881 chr1 173455474 173455474 1 + T G UCEC 173455474 + 173455454 173455494 41 GGCAGGAACTTTGATGAGATTCTCAGGGTAGTCATCTCTCT GGCAGGAACTTTGATGAGATGCTCAGGGTAGTCATCTCTCT Direct Gain 0 0.941687549393006 NA NA prediction 0.883375098786011 Functional Gain - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173455474 chr1:173455474 nonsynonymous SNV 0.990 4 21 hm7G_associated_SNPs_40082 0 0 1 0 2 PRDX6 chr1:173455540 5'GT 173455540 Upstream 67bp 36882 chrX 57515266 57515266 1 + C G BLCA 57515266 + 57515246 57515286 41 AAAGGACTCCCTTTAGGCATCCAGGTTGTGGCTGGACCCTT AAAGGACTCCCTTTAGGCATGCAGGTTGTGGCTGGACCCTT Direct Gain 0 0.941645755056311 NA NA prediction 0.883291510112622 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57515266 chrX:57515266 nonsynonymous SNV 0.956 3 21 hm7G_associated_SNPs_40085 0 0 0 0 1 FAAH2 chrX:57515190 3'AG 57515190 Downstream 77bp 36883 chr2 102636134 102636134 1 + T G COAD 102636134 + 102636114 102636154 41 GGATAAAGACAATGAGAAATTTCTAAGTGTGAGGGGGACCA GGATAAAGACAATGAGAAATGTCTAAGTGTGAGGGGGACCA Direct Gain 0 0.9416014212408 NA NA prediction 0.8832028424816 Functional Gain - IL1R2 ENSG00000115590 CDS Human protein_coding chr2:102636134 chr2:102636134 nonsynonymous SNV 0.023 3 21 hm7G_associated_SNPs_40086 0 0 0 0 1 IL1R2 chr2:102636100 3'AG 102636100 Downstream 35bp 36884 chr4 119618339 119618339 1 + A G BLCA 119618339 + 119618319 119618359 41 AATGCTTTAATCAAATAGGTACTTACAAGCCGATATAGAAG AATGCTTTAATCAAATAGGTGCTTACAAGCCGATATAGAAG Direct Gain 0 0.94158844047223 NA NA prediction 0.883176880944461 Functional Gain - METTL14 ENSG00000145388 CDS Human protein_coding chr4:119618339 chr4:119618339 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40087 0 0 1 0 1 METTL14 chr4:119618337 3'AG 119618337 Downstream 3bp 36885 chr2 219677690 219677690 1 + A G rs61733619 219677690 + 219677670 219677710 41 CTCGAAGATATGGAGGCCCAACTGCAGGCAGCAGGGCCAGA CTCGAAGATATGGAGGCCCAGCTGCAGGCAGCAGGGCCAGA Direct Gain 0 0.941586425226403 NA NA prediction 0.883172850452806 Functional Gain - CYP27A1 ENSG00000135929 CDS Human protein_coding chr2:219677690 chr2:219677690 synonymous SNV . 0 21 hm7G_associated_SNPs_40088 1 0 1 0 1 CYP27A1 chr2:219677647 3'AG 219677647 Downstream 44bp 36886 chr14 31349668 31349668 1 + A G SKCM 31349668 + 31349648 31349688 41 TTTATTTCAGGTAAACGACTAAAGAAAACACCCGAGAAGAA TTTATTTCAGGTAAACGACTGAAGAAAACACCCGAGAAGAA Direct Gain 0 0.941567560319703 NA NA prediction 0.883135120639405 Functional Gain - COCH ENSG00000100473 CDS Human protein_coding chr14:31349668 chr14:31349668 synonymous SNV . 0 21 hm7G_associated_SNPs_40089 0 0 1 0 1 COCH chr14:31349702 5'GT 31349702 Upstream 35bp 36887 chr1 249210807 249210807 1 + C G BRCA 249210807 + 249210787 249210827 41 TCCTGTCATAACAGAGATGTCATTGCTGGGAGAGGTATCCA TCCTGTCATAACAGAGATGTGATTGCTGGGAGAGGTATCCA Direct Gain 0 0.941546926668775 NA NA prediction 0.883093853337549 Functional Gain - PGBD2 ENSG00000185220 CDS Human protein_coding chr1:249210807 chr1:249210807 synonymous SNV . 0 21 hm7G_associated_SNPs_40090 0 0 1 0 1 PGBD2 chr1:249210801 3'AG 249210801 Downstream 7bp 36888 chr5 72332974 72332974 1 + A G rs573472709 72332974 + 72332954 72332994 41 TATATTTATTTTAAAGGTATAAAACCAAGGAAAAGAAAGAC TATATTTATTTTAAAGGTATGAAACCAAGGAAAAGAAAGAC Direct Gain 0 0.941531358758359 NA NA prediction 0.883062717516718 Functional Gain - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72332974 chr5:72332974 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_40091 0 0 1 0 2 FCHO2 chr5:72332970 3'AG 72332970 Downstream 5bp 36889 chr5 72332974 72332974 1 + A G rs573472709 72332974 + 72332954 72332994 41 TATATTTATTTTAAAGGTATAAAACCAAGGAAAAGAAAGAC TATATTTATTTTAAAGGTATGAAACCAAGGAAAAGAAAGAC Direct Gain 0 0.941531358758359 NA NA prediction 0.883062717516718 Functional Gain - FCHO2 ENSG00000157107 CDS Human protein_coding chr5:72332974 chr5:72332974 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_40091 0 0 1 0 2 FCHO2 chr5:72333042 5'GT 72333042 Upstream 69bp 36890 chr11 10795663 10795663 1 + A G COAD 10795663 + 10795643 10795683 41 AGAAAGGGTAGTGGCAGTGAACAAGAAGGTGAAGATGAGGA AGAAAGGGTAGTGGCAGTGAGCAAGAAGGTGAAGATGAGGA Direct Gain 0 0.941524546671176 NA NA prediction 0.883049093342352 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10795663 chr11:10795663 synonymous SNV . 0 21 hm7G_associated_SNPs_40092 0 0 1 0 1 CTR9 chr11:10795716 5'GT 10795716 Upstream 54bp 36891 chr3 178942491 178942491 1 + T G rs116164892 178942491 + 178942471 178942511 41 TTTTAACTATTTTAAAGGCTTGAAGAGTGTCGAATTATGTC TTTTAACTATTTTAAAGGCTGGAAGAGTGTCGAATTATGTC Direct Gain 0 0.941516493024465 NA NA prediction 0.88303298604893 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178942491 chr3:178942491 synonymous SNV . 0 21 hm7G_associated_SNPs_40093 1 0 0 0 1 PIK3CA chr3:178942488 3'AG 178942488 Downstream 4bp 36892 chr1 63862213 63862213 1 + T G BRCA 63862213 + 63862193 63862233 41 AACCGCCTATGTTTGGTGATTATGAAGCTCAGAGACACTGG AACCGCCTATGTTTGGTGATGATGAAGCTCAGAGACACTGG Direct Gain 0 0.941485366113601 NA NA prediction 0.882970732227202 Functional Gain - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63862213 chr1:63862213 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40095 0 0 1 2 2 ALG6 chr1:63862184 3'AG 63862184 Downstream 30bp 36893 chr1 63862213 63862213 1 + T G BRCA 63862213 + 63862193 63862233 41 AACCGCCTATGTTTGGTGATTATGAAGCTCAGAGACACTGG AACCGCCTATGTTTGGTGATGATGAAGCTCAGAGACACTGG Direct Gain 0 0.941485366113601 NA NA prediction 0.882970732227202 Functional Gain - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63862213 chr1:63862213 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40095 0 0 1 2 2 ALG6 chr1:63862268 5'GT 63862268 Upstream 56bp 36894 chr6 109190048 109190048 1 + C G LIHC 109190048 + 109190028 109190068 41 AACCGAAAGTTCCAGCATCTCCCACCAGAGAGGAGGATTCC AACCGAAAGTTCCAGCATCTGCCACCAGAGAGGAGGATTCC Direct Gain 0 0.941475912790413 NA NA prediction 0.882951825580826 Functional Gain - ARMC2 ENSG00000118690 CDS Human protein_coding chr6:109190048 chr6:109190048 nonsynonymous SNV 0.832 0 21 hm7G_associated_SNPs_40097 0 0 0 0 1 ARMC2 chr6:109190027 3'AG 109190027 Downstream 22bp 36895 chr10 1063061 1063061 1 + T G UCEC 1063061 + 1063041 1063081 41 GAAGAATGCTCAGAAGAAGATGAATCGGTTGGGGAAGAAAG GAAGAATGCTCAGAAGAAGAGGAATCGGTTGGGGAAGAAAG Direct Gain 0 0.941465128843538 NA NA prediction 0.882930257687075 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1063061 chr10:1063061 nonsynonymous SNV 0.987 1 21 hm7G_associated_SNPs_40098 0 0 1 0 1 GTPBP4 chr10:1063015 3'AG 1063015 Downstream 47bp 36896 chr11 63978588 63978588 1 + A G COAD 63978588 + 63978568 63978608 41 AAGAAGGAGAAGAAGAAGAAAGAGAAGGAGCCAGAGGAAGA AAGAAGGAGAAGAAGAAGAAGGAGAAGGAGCCAGAGGAAGA Direct Gain 0 0.941452728688903 NA NA prediction 0.882905457377806 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978588 chr11:63978588 synonymous SNV . 0 21 hm7G_associated_SNPs_40099 0 0 1 0 2 FERMT3 chr11:63978524 3'AG 63978524 Downstream 65bp 36897 chr11 63978588 63978588 1 + A G COAD 63978588 + 63978568 63978608 41 AAGAAGGAGAAGAAGAAGAAAGAGAAGGAGCCAGAGGAAGA AAGAAGGAGAAGAAGAAGAAGGAGAAGGAGCCAGAGGAAGA Direct Gain 0 0.941452728688903 NA NA prediction 0.882905457377806 Functional Gain - FERMT3 ENSG00000149781 CDS Human protein_coding chr11:63978588 chr11:63978588 synonymous SNV . 0 21 hm7G_associated_SNPs_40099 0 0 1 0 2 FERMT3 chr11:63978643 5'GT 63978643 Upstream 56bp 36898 chr17 1680546 1680546 1 + C G UCEC 1680546 + 1680526 1680566 41 GCAAACCCATCAAGCTGACTCAGGTGGAACACCGGGCTGGC GCAAACCCATCAAGCTGACTGAGGTGGAACACCGGGCTGGC Direct Gain 0 0.941419730706503 NA NA prediction 0.882839461413006 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1680546 chr17:1680546 nonsynonymous SNV 0.836 0 21 hm7G_associated_SNPs_40100 0 0 1 0 1 SERPINF1 chr17:1680481 3'AG 1680481 Downstream 66bp 36899 chr1 168549385 168549385 1 + C G HNSC 168549385 + 168549365 168549405 41 TAGCAGAATCAAGACCTACACCATCACGGAAGGCTCCTTGA TAGCAGAATCAAGACCTACAGCATCACGGAAGGCTCCTTGA Direct Gain 0 0.941396235943808 NA NA prediction 0.882792471887615 Functional Gain - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549385 chr1:168549385 nonsynonymous SNV 0.952 2 21 hm7G_associated_SNPs_40101 0 0 0 0 2 XCL1 chr1:168549301 3'AG 168549301 Downstream 85bp 36900 chr1 168549385 168549385 1 + C G HNSC 168549385 + 168549365 168549405 41 TAGCAGAATCAAGACCTACACCATCACGGAAGGCTCCTTGA TAGCAGAATCAAGACCTACAGCATCACGGAAGGCTCCTTGA Direct Gain 0 0.941396235943808 NA NA prediction 0.882792471887615 Functional Gain - XCL1 ENSG00000143184 CDS Human protein_coding chr1:168549385 chr1:168549385 nonsynonymous SNV 0.952 2 21 hm7G_associated_SNPs_40101 0 0 0 0 2 XCL1 chr1:168549415 5'GT 168549415 Upstream 31bp 36901 chr16 30387499 30387499 1 + A G THYM 30387499 + 30387479 30387519 41 TCGACCAGAACCGTGATGGTATTATAGACAAGGAGGACCTT TCGACCAGAACCGTGATGGTGTTATAGACAAGGAGGACCTT Direct Gain 0 0.94136727154307 NA NA prediction 0.88273454308614 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387499 chr16:30387499 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40103 0 0 0 0 2 MYLPF chr16:30387466 3'AG 30387466 Downstream 34bp 36902 chr16 30387499 30387499 1 + A G THYM 30387499 + 30387479 30387519 41 TCGACCAGAACCGTGATGGTATTATAGACAAGGAGGACCTT TCGACCAGAACCGTGATGGTGTTATAGACAAGGAGGACCTT Direct Gain 0 0.94136727154307 NA NA prediction 0.88273454308614 Functional Gain - MYLPF ENSG00000180209 CDS Human protein_coding chr16:30387499 chr16:30387499 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40103 0 0 0 0 2 MYLPF chr16:30387541 5'GT 30387541 Upstream 43bp 36903 chr9 4572296 4572296 1 + C G SKCM 4572296 + 4572276 4572316 41 TGCCTTGTCTTTGGACTTGTCATTGGAAAAATGGGAGAAAA TGCCTTGTCTTTGGACTTGTGATTGGAAAAATGGGAGAAAA Direct Gain 0 0.941325139182275 NA NA prediction 0.882650278364549 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4572296 chr9:4572296 synonymous SNV . 0 21 hm7G_associated_SNPs_40107 0 0 0 0 2 SLC1A1 chr9:4572204 3'AG 4572204 Downstream 93bp 36904 chr9 4572296 4572296 1 + C G SKCM 4572296 + 4572276 4572316 41 TGCCTTGTCTTTGGACTTGTCATTGGAAAAATGGGAGAAAA TGCCTTGTCTTTGGACTTGTGATTGGAAAAATGGGAGAAAA Direct Gain 0 0.941325139182275 NA NA prediction 0.882650278364549 Functional Gain - SLC1A1 ENSG00000106688 CDS Human protein_coding chr9:4572296 chr9:4572296 synonymous SNV . 0 21 hm7G_associated_SNPs_40107 0 0 0 0 2 SLC1A1 chr9:4572388 5'GT 4572388 Upstream 93bp 36905 chr4 39462562 39462562 1 + A G LUSC 39462562 + 39462542 39462582 41 GATGAATATAAAGGAAACCTAAAACGCCAGAAAGGAGAAAG GATGAATATAAAGGAAACCTGAAACGCCAGAAAGGAGAAAG Direct Gain 0 0.941238408476316 NA NA prediction 0.882476816952632 Functional Gain - LIAS ENSG00000121897 CDS Human protein_coding chr4:39462562 chr4:39462562 synonymous SNV . 0 21 hm7G_associated_SNPs_40110 0 0 0 0 1 LIAS chr4:39462582 5'GT 39462582 Upstream 21bp 36906 chr3 139067005 139067005 1 + A G UCEC 139067005 + 139066985 139067025 41 ATATTTTCTTTCATTAGGCTACAAGACAGGCAGTTGAGGCA ATATTTTCTTTCATTAGGCTGCAAGACAGGCAGTTGAGGCA Direct Gain 0 0.941229273275952 NA NA prediction 0.882458546551903 Functional Gain - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139067005 chr3:139067005 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_40111 0 0 1 0 1 MRPS22 chr3:139067002 3'AG 139067002 Downstream 4bp 36907 chr11 22398151 22398151 1 + C G LUSC 22398151 + 22398131 22398171 41 CAGTATCTTAATGGGCATTTCGAATGGTGTTGGCACATTGT CAGTATCTTAATGGGCATTTGGAATGGTGTTGGCACATTGT Direct Gain 0 0.941203433160816 NA NA prediction 0.882406866321632 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22398151 chr11:22398151 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_40112 0 0 0 0 2 SLC17A6 chr11:22398091 3'AG 22398091 Downstream 61bp 36908 chr11 22398151 22398151 1 + C G LUSC 22398151 + 22398131 22398171 41 CAGTATCTTAATGGGCATTTCGAATGGTGTTGGCACATTGT CAGTATCTTAATGGGCATTTGGAATGGTGTTGGCACATTGT Direct Gain 0 0.941203433160816 NA NA prediction 0.882406866321632 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22398151 chr11:22398151 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_40112 0 0 0 0 2 SLC17A6 chr11:22398218 5'GT 22398218 Upstream 68bp 36909 chr6 84567050 84567050 1 + C G HNSC 84567050 + 84567030 84567070 41 TCCAATTCAAGCCACAATTTCATTTTATGAAGATTCTGATA TCCAATTCAAGCCACAATTTGATTTTATGAAGATTCTGATA Direct Gain 0 0.941125683936758 NA NA prediction 0.882251367873515 Functional Gain - RIPPLY2 ENSG00000203877 CDS Human protein_coding chr6:84567050 chr6:84567050 stopgain 1.000 1 21 hm7G_associated_SNPs_40117 0 0 1 0 1 RIPPLY2 chr6:84566961 3'AG 84566961 Downstream 90bp 36910 chr19 15760978 15760978 1 + A G LUAD 15760978 + 15760958 15760998 41 ACTTTGGACTTCATTGATGTACTCCTGCTGAGCAAGGTGGG ACTTTGGACTTCATTGATGTGCTCCTGCTGAGCAAGGTGGG Direct Gain 0 0.941120084347533 NA NA prediction 0.882240168695066 Functional Gain - CYP4F3 ENSG00000186529 CDS Human protein_coding chr19:15760978 chr19:15760978 synonymous SNV . 0 21 hm7G_associated_SNPs_40118 0 0 0 0 1 CYP4F3 chr19:15760993 5'GT 15760993 Upstream 16bp 36911 chr16 71419544 71419544 1 + A G rs149917134 71419544 + 71419524 71419564 41 GAAGGATCTGTACGAGAAAAACAAAAAGGTGAGCAGCCAAG GAAGGATCTGTACGAGAAAAGCAAAAAGGTGAGCAGCCAAG Direct Gain 0 0.941113890373754 NA NA prediction 0.882227780747509 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71419544 chr16:71419544 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_40119 0 0 0 1 2 CALB2 chr16:71419480 3'AG 71419480 Downstream 65bp 36912 chr16 71419544 71419544 1 + A G rs149917134 71419544 + 71419524 71419564 41 GAAGGATCTGTACGAGAAAAACAAAAAGGTGAGCAGCCAAG GAAGGATCTGTACGAGAAAAGCAAAAAGGTGAGCAGCCAAG Direct Gain 0 0.941113890373754 NA NA prediction 0.882227780747509 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71419544 chr16:71419544 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_40119 0 0 0 1 2 CALB2 chr16:71419551 5'GT 71419551 Upstream 8bp 36913 chr13 76447818 76447818 1 + C G rs74505052 76447818 + 76447798 76447838 41 AGTTTCGGGAATGATGATTTCGCTGGAAGTGCGGTGGTGGA AGTTTCGGGAATGATGATTTGGCTGGAAGTGCGGTGGTGGA Direct Gain 0 0.941068740576423 NA NA prediction 0.882137481152845 Functional Gain - LMO7DN ENSG00000178734 CDS Human protein_coding chr13:76447818 chr13:76447818 nonsynonymous SNV 0.001 1 21 hm7G_associated_SNPs_40122 0 0 0 0 2 LMO7DN chr13:76447793 3'AG 76447793 Downstream 26bp 36914 chr13 76447818 76447818 1 + C G rs74505052 76447818 + 76447798 76447838 41 AGTTTCGGGAATGATGATTTCGCTGGAAGTGCGGTGGTGGA AGTTTCGGGAATGATGATTTGGCTGGAAGTGCGGTGGTGGA Direct Gain 0 0.941068740576423 NA NA prediction 0.882137481152845 Functional Gain - LMO7DN ENSG00000178734 CDS Human protein_coding chr13:76447818 chr13:76447818 nonsynonymous SNV 0.001 1 21 hm7G_associated_SNPs_40122 0 0 0 0 2 LMO7DN chr13:76447870 5'GT 76447870 Upstream 53bp 36915 chrX 153629053 153629053 1 + C G CESC 153629053 + 153629033 153629073 41 TGCTCCTTAGATCCACATCTCAAAGAAGTGGGGCTTCACCA TGCTCCTTAGATCCACATCTGAAAGAAGTGGGGCTTCACCA Direct Gain 0 0.941025728890198 NA NA prediction 0.882051457780396 Functional Gain - RPL10 ENSG00000147403 CDS Human protein_coding chrX:153629053 chrX:153629053 stopgain 0.999 1 21 hm7G_associated_SNPs_40124 0 0 1 0 1 RPL10 chrX:153629043 3'AG 153629043 Downstream 11bp 36916 chr11 65111502 65111502 1 + C G SARC 65111502 + 65111482 65111522 41 CCGTAAGAAGCTGGATGCTTCCATCCTGGAGGACCGGGATA CCGTAAGAAGCTGGATGCTTGCATCCTGGAGGACCGGGATA Direct Gain 0 0.941015280036035 NA NA prediction 0.882030560072071 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65111502 chr11:65111502 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40125 0 0 1 0 1 DPF2 chr11:65111540 5'GT 65111540 Upstream 39bp 36917 chr18 43702509 43702509 1 + C G LUSC 43702509 + 43702489 43702529 41 GTCGTCAGAACATGGACTTTCTAAAAGCAAAGTCAGAGGAA GTCGTCAGAACATGGACTTTGTAAAAGCAAAGTCAGAGGAA Direct Gain 0 0.941004428601223 NA NA prediction 0.882008857202446 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43702509 chr18:43702509 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40126 0 0 1 0 2 HAUS1 chr18:43702433 3'AG 43702433 Downstream 77bp 36918 chr18 43702509 43702509 1 + C G LUSC 43702509 + 43702489 43702529 41 GTCGTCAGAACATGGACTTTCTAAAAGCAAAGTCAGAGGAA GTCGTCAGAACATGGACTTTGTAAAAGCAAAGTCAGAGGAA Direct Gain 0 0.941004428601223 NA NA prediction 0.882008857202446 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43702509 chr18:43702509 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40126 0 0 1 0 2 HAUS1 chr18:43702556 5'GT 43702556 Upstream 48bp 36919 chr11 113813828 113813828 1 + A G LUSC 113813828 + 113813808 113813848 41 CCGAGCCAGGATTGTGTTCAAGACCAGTGTGCTGGTGGGCT CCGAGCCAGGATTGTGTTCAGGACCAGTGTGCTGGTGGGCT Direct Gain 0 0.941001403041765 NA NA prediction 0.88200280608353 Functional Gain - HTR3B ENSG00000149305 CDS Human protein_coding chr11:113813828 chr11:113813828 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40127 0 0 0 0 1 HTR3B chr11:113813914 5'GT 113813914 Upstream 87bp 36920 chr3 119325745 119325745 1 + A G STAD 119325745 + 119325725 119325765 41 AATCCTAGCTGTGGGCAGCTAGTAGAAGGAAGCAGTGACCT AATCCTAGCTGTGGGCAGCTGGTAGAAGGAAGCAGTGACCT Direct Gain 0 0.940997676462709 NA NA prediction 0.881995352925419 Functional Gain - PLA1A ENSG00000144837 CDS Human protein_coding chr3:119325745 chr3:119325745 synonymous SNV . 0 21 hm7G_associated_SNPs_40128 0 0 0 1 1 PLA1A chr3:119325822 5'GT 119325822 Upstream 78bp 36921 chr2 27892132 27892132 1 + C G CESC 27892132 + 27892112 27892152 41 AAGATTACCTGTGGACGATTCAACTGGAAAACAACTGGTGG AAGATTACCTGTGGACGATTGAACTGGAAAACAACTGGTGG Direct Gain 0 0.940973453343518 NA NA prediction 0.881946906687036 Functional Gain - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27892132 chr2:27892132 stopgain 1.000 1 21 hm7G_associated_SNPs_40130 0 0 1 0 1 SLC4A1AP chr2:27892115 3'AG 27892115 Downstream 18bp 36922 chr5 52781803 52781803 1 + A G LIHC 52781803 + 52781783 52781823 41 ATTTCGGAAGACACCGAGGAAGAGGAGGAAGATGAAGACCA ATTTCGGAAGACACCGAGGAGGAGGAGGAAGATGAAGACCA Direct Gain 0 0.940951695368638 NA NA prediction 0.881903390737276 Functional Gain - FST ENSG00000134363 CDS Human protein_coding chr5:52781803 chr5:52781803 synonymous SNV . 0 21 hm7G_associated_SNPs_40131 0 0 1 0 1 FST chr5:52781781 3'AG 52781781 Downstream 23bp 36923 chr19 40197284 40197284 1 + A G UCEC 40197284 + 40197264 40197304 41 CCTGTTGGTTCGTGCGTGATAATCACAGGGACACCGATCCT CCTGTTGGTTCGTGCGTGATGATCACAGGGACACCGATCCT Direct Gain 0 0.940930059896491 NA NA prediction 0.881860119792983 Functional Gain - LGALS14 ENSG00000006659 CDS Human protein_coding chr19:40197284 chr19:40197284 nonsynonymous SNV 0.009 2 21 hm7G_associated_SNPs_40132 0 0 0 0 2 LGALS14 chr19:40197237 3'AG 40197237 Downstream 48bp 36924 chr19 40197284 40197284 1 + A G UCEC 40197284 + 40197264 40197304 41 CCTGTTGGTTCGTGCGTGATAATCACAGGGACACCGATCCT CCTGTTGGTTCGTGCGTGATGATCACAGGGACACCGATCCT Direct Gain 0 0.940930059896491 NA NA prediction 0.881860119792983 Functional Gain - LGALS14 ENSG00000006659 CDS Human protein_coding chr19:40197284 chr19:40197284 nonsynonymous SNV 0.009 2 21 hm7G_associated_SNPs_40132 0 0 0 0 2 LGALS14 chr19:40197313 5'GT 40197313 Upstream 30bp 36925 chr7 150931199 150931199 1 + C G HNSC 150931199 + 150931179 150931219 41 CTCCTGCGGGTTTCCTGGATCCAGGGGGAGGGAGAAGATCC CTCCTGCGGGTTTCCTGGATGCAGGGGGAGGGAGAAGATCC Direct Gain 0 0.940929456081341 NA NA prediction 0.881858912162683 Functional Gain - CHPF2 ENSG00000033100 CDS Human protein_coding chr7:150931199 chr7:150931199 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_40133 0 0 1 0 1 CHPF2 chr7:150931172 3'AG 150931172 Downstream 28bp 36926 chr19 54634824 54634824 1 + C G rs148353051 54634824 + 54634804 54634844 41 TCCAGCATGGCTGAGTTCCTCAAGGTCAAGGGCGAGAAGAG TCCAGCATGGCTGAGTTCCTGAAGGTCAAGGGCGAGAAGAG Direct Gain 0 0.940923147664505 NA NA prediction 0.88184629532901 Functional Gain - PRPF31 ENSG00000105618 CDS Human protein_coding chr19:54634824 chr19:54634824 synonymous SNV . 0 21 hm7G_associated_SNPs_40134 0 0 1 0 1 PRPF31 chr19:54634738 3'AG 54634738 Downstream 87bp 36927 chr14 75190043 75190043 1 + C G THCA 75190043 + 75190023 75190063 41 GGCAGAAGTATCGAGTGGCTCTAAGGTAGGAAGGAGGTAAA GGCAGAAGTATCGAGTGGCTGTAAGGTAGGAAGGAGGTAAA Direct Gain 0 0.940909514970408 NA NA prediction 0.881819029940816 Functional Gain - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190043 chr14:75190043 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_40135 0 0 1 2 2 FCF1 chr14:75189975 3'AG 75189975 Downstream 69bp 36928 chr14 75190043 75190043 1 + C G THCA 75190043 + 75190023 75190063 41 GGCAGAAGTATCGAGTGGCTCTAAGGTAGGAAGGAGGTAAA GGCAGAAGTATCGAGTGGCTGTAAGGTAGGAAGGAGGTAAA Direct Gain 0 0.940909514970408 NA NA prediction 0.881819029940816 Functional Gain - FCF1 ENSG00000119616 CDS Human protein_coding chr14:75190043 chr14:75190043 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_40135 0 0 1 2 2 FCF1 chr14:75190047 5'GT 75190047 Upstream 5bp 36929 chr17 79663641 79663641 1 + A G UCEC 79663641 + 79663621 79663661 41 TGTTTTTGCCGCACAGGAGTACCTGGAGGTGCAGAGGCAGC TGTTTTTGCCGCACAGGAGTGCCTGGAGGTGCAGAGGCAGC Direct Gain 0 0.940902467521677 NA NA prediction 0.881804935043353 Functional Gain - HGS ENSG00000185359 CDS Human protein_coding chr17:79663641 chr17:79663641 nonsynonymous SNV 0.918 3 21 hm7G_associated_SNPs_40136 0 0 1 0 1 HGS chr17:79663637 3'AG 79663637 Downstream 5bp 36930 chr6 119226832 119226832 1 + C G HNSC 119226832 + 119226812 119226852 41 TCTAGGCTGATGCACCTAATCCAGGACTCATTCCAGATGCA TCTAGGCTGATGCACCTAATGCAGGACTCATTCCAGATGCA Direct Gain 0 0.940900156051562 NA NA prediction 0.881800312103123 Functional Gain - ASF1A ENSG00000111875 CDS Human protein_coding chr6:119226832 chr6:119226832 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_40137 0 0 1 0 1 ASF1A chr6:119226817 3'AG 119226817 Downstream 16bp 36931 chr2 98263883 98263883 1 + A G rs75630766 98263883 + 98263863 98263903 41 TTTAGTCCCCTCCATCTCCAACAAGAGAATAGTAGGCTGCA TTTAGTCCCCTCCATCTCCAGCAAGAGAATAGTAGGCTGCA Direct Gain 0 0.940898380602319 NA NA prediction 0.881796761204637 Functional Gain - COX5B ENSG00000135940 CDS Human protein_coding chr2:98263883 chr2:98263883 nonsynonymous SNV 0.294 0 21 hm7G_associated_SNPs_40138 0 0 1 0 2 COX5B chr2:98263807 3'AG 98263807 Downstream 77bp 36932 chr2 98263883 98263883 1 + A G rs75630766 98263883 + 98263863 98263903 41 TTTAGTCCCCTCCATCTCCAACAAGAGAATAGTAGGCTGCA TTTAGTCCCCTCCATCTCCAGCAAGAGAATAGTAGGCTGCA Direct Gain 0 0.940898380602319 NA NA prediction 0.881796761204637 Functional Gain - COX5B ENSG00000135940 CDS Human protein_coding chr2:98263883 chr2:98263883 nonsynonymous SNV 0.294 0 21 hm7G_associated_SNPs_40138 0 0 1 0 2 COX5B chr2:98263906 5'GT 98263906 Upstream 24bp 36933 chr10 126507974 126507974 1 + A G LIHC 126507974 + 126507954 126507994 41 TTTTATGACTACGCAAGCAAAGTGAATGAGGAGAGTTTGGA TTTTATGACTACGCAAGCAAGGTGAATGAGGAGAGTTTGGA Direct Gain 0 0.940887859081447 NA NA prediction 0.881775718162893 Functional Gain - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126507974 chr10:126507974 synonymous SNV . 0 21 hm7G_associated_SNPs_40139 0 0 1 0 2 ABRAXAS2 chr10:126507953 3'AG 126507953 Downstream 22bp 36934 chr10 126507974 126507974 1 + A G LIHC 126507974 + 126507954 126507994 41 TTTTATGACTACGCAAGCAAAGTGAATGAGGAGAGTTTGGA TTTTATGACTACGCAAGCAAGGTGAATGAGGAGAGTTTGGA Direct Gain 0 0.940887859081447 NA NA prediction 0.881775718162893 Functional Gain - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126507974 chr10:126507974 synonymous SNV . 0 21 hm7G_associated_SNPs_40139 0 0 1 0 2 ABRAXAS2 chr10:126508019 5'GT 126508019 Upstream 46bp 36935 chr16 67100608 67100608 1 + T G BRCA 67100608 + 67100588 67100628 41 TATTTGAAGGCTCCCATGATTCTGAATGGAGTCTGTGTTAT TATTTGAAGGCTCCCATGATGCTGAATGGAGTCTGTGTTAT Direct Gain 0 0.94085286284389 NA NA prediction 0.88170572568778 Functional Gain - CBFB ENSG00000067955 CDS Human protein_coding chr16:67100608 chr16:67100608 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40142 0 0 1 0 2 CBFB chr16:67100585 3'AG 67100585 Downstream 24bp 36936 chr16 67100608 67100608 1 + T G BRCA 67100608 + 67100588 67100628 41 TATTTGAAGGCTCCCATGATTCTGAATGGAGTCTGTGTTAT TATTTGAAGGCTCCCATGATGCTGAATGGAGTCTGTGTTAT Direct Gain 0 0.94085286284389 NA NA prediction 0.88170572568778 Functional Gain - CBFB ENSG00000067955 CDS Human protein_coding chr16:67100608 chr16:67100608 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40142 0 0 1 0 2 CBFB chr16:67100701 5'GT 67100701 Upstream 94bp 36937 chr5 52779494 52779494 1 + A G LUAD 52779494 + 52779474 52779514 41 CGCAATGAATGTGCACTCCTAAAGGCAAGATGTAAAGAGCA CGCAATGAATGTGCACTCCTGAAGGCAAGATGTAAAGAGCA Direct Gain 0 0.94085220766441 NA NA prediction 0.881704415328821 Functional Gain - FST ENSG00000134363 CDS Human protein_coding chr5:52779494 chr5:52779494 synonymous SNV . 0 21 hm7G_associated_SNPs_40143 0 0 1 0 1 FST chr5:52779552 5'GT 52779552 Upstream 59bp 36938 chr5 131671652 131671652 1 + C G CESC 131671652 + 131671632 131671672 41 GGGGGTCACATCCACGGCCTCCAGAGTGGGCAGCATCATTG GGGGGTCACATCCACGGCCTGCAGAGTGGGCAGCATCATTG Direct Gain 0 0.940827417768164 NA NA prediction 0.881654835536328 Functional Gain - SLC22A4 ENSG00000197208 CDS Human protein_coding chr5:131671652 chr5:131671652 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40145 0 0 0 0 1 SLC22A4 chr5:131671693 5'GT 131671693 Upstream 42bp 36939 chr17 38132232 38132232 1 + A G COAD 38132232 + 38132212 38132252 41 TCCATGGAGAAAAAGATCCTACCCGTGCAGCTAAAGCTGGT TCCATGGAGAAAAAGATCCTGCCCGTGCAGCTAAAGCTGGT Direct Gain 0 0.940819393298958 NA NA prediction 0.881638786597916 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38132232 chr17:38132232 synonymous SNV . 0 21 hm7G_associated_SNPs_40146 0 0 0 0 2 GSDMA chr17:38132177 3'AG 38132177 Downstream 56bp 36940 chr17 38132232 38132232 1 + A G COAD 38132232 + 38132212 38132252 41 TCCATGGAGAAAAAGATCCTACCCGTGCAGCTAAAGCTGGT TCCATGGAGAAAAAGATCCTGCCCGTGCAGCTAAAGCTGGT Direct Gain 0 0.940819393298958 NA NA prediction 0.881638786597916 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38132232 chr17:38132232 synonymous SNV . 0 21 hm7G_associated_SNPs_40146 0 0 0 0 2 GSDMA chr17:38132250 5'GT 38132250 Upstream 19bp 36941 chr19 54403512 54403512 1 + A G UCEC 54403512 + 54403492 54403532 41 CCTGTATTTCGTGATGGAGTACGTCACCGGGGGAGACTTGA CCTGTATTTCGTGATGGAGTGCGTCACCGGGGGAGACTTGA Direct Gain 0 0.940816292640454 NA NA prediction 0.881632585280907 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54403512 chr19:54403512 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_40147 0 0 0 0 1 PRKCG chr19:54403487 3'AG 54403487 Downstream 26bp 36942 chr17 41165321 41165321 1 + C G CESC 41165321 + 41165301 41165341 41 CAACAAAAGGAGCACACGATCAACATGGAGGAGTGCCGGCT CAACAAAAGGAGCACACGATGAACATGGAGGAGTGCCGGCT Direct Gain 0 0.94080674498871 NA NA prediction 0.88161348997742 Functional Gain - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165321 chr17:41165321 nonsynonymous SNV 0.061 2 21 hm7G_associated_SNPs_40150 0 0 1 0 2 IFI35 chr17:41165284 3'AG 41165284 Downstream 38bp 36943 chr17 41165321 41165321 1 + C G CESC 41165321 + 41165301 41165341 41 CAACAAAAGGAGCACACGATCAACATGGAGGAGTGCCGGCT CAACAAAAGGAGCACACGATGAACATGGAGGAGTGCCGGCT Direct Gain 0 0.94080674498871 NA NA prediction 0.88161348997742 Functional Gain - IFI35 ENSG00000068079 CDS Human protein_coding chr17:41165321 chr17:41165321 nonsynonymous SNV 0.061 2 21 hm7G_associated_SNPs_40150 0 0 1 0 2 IFI35 chr17:41165396 5'GT 41165396 Upstream 76bp 36944 chr9 32427396 32427396 1 + A G rs35370505 32427396 + 32427376 32427416 41 GGCGTGGTCACCTACTACCTACAAGAAAGCGGAGTCATGCC GGCGTGGTCACCTACTACCTGCAAGAAAGCGGAGTCATGCC Direct Gain 0 0.940722815336083 NA NA prediction 0.881445630672166 Functional Gain - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32427396 chr9:32427396 synonymous SNV . 0 21 hm7G_associated_SNPs_40154 0 0 0 2 2 ACO1 chr9:32427299 3'AG 32427299 Downstream 98bp 36945 chr9 32427396 32427396 1 + A G rs35370505 32427396 + 32427376 32427416 41 GGCGTGGTCACCTACTACCTACAAGAAAGCGGAGTCATGCC GGCGTGGTCACCTACTACCTGCAAGAAAGCGGAGTCATGCC Direct Gain 0 0.940722815336083 NA NA prediction 0.881445630672166 Functional Gain - ACO1 ENSG00000122729 CDS Human protein_coding chr9:32427396 chr9:32427396 synonymous SNV . 0 21 hm7G_associated_SNPs_40154 0 0 0 2 2 ACO1 chr9:32427434 5'GT 32427434 Upstream 39bp 36946 chr20 31643287 31643287 1 + C G BLCA 31643287 + 31643267 31643307 41 TGCTCTGGGGCCTGGCGACTCCATGCCAGGAGCTGCTAGAG TGCTCTGGGGCCTGGCGACTGCATGCCAGGAGCTGCTAGAG Direct Gain 0 0.940718279863146 NA NA prediction 0.881436559726291 Functional Gain - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31643287 chr20:31643287 nonsynonymous SNV 0.398 3 21 hm7G_associated_SNPs_40155 0 0 0 0 1 BPIFB3 chr20:31643353 5'GT 31643353 Upstream 67bp 36947 chr16 49433132 49433132 1 + C G CESC 49433132 + 49433112 49433152 41 GATATCCACCCCCACATGGTCGAAGAGGACATAGATGCTAA GATATCCACCCCCACATGGTGGAAGAGGACATAGATGCTAA Direct Gain 0 0.940704438842797 NA NA prediction 0.881408877685595 Functional Gain - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49433132 chr16:49433132 synonymous SNV . 0 21 hm7G_associated_SNPs_40156 0 0 0 0 1 C16orf78 chr16:49433042 3'AG 49433042 Downstream 91bp 36948 chr19 13007178 13007178 1 + C G BLCA 13007178 + 13007158 13007198 41 TCAGCCACAGGCATGATCATCATGGACGGTGTGGAGGTGCC TCAGCCACAGGCATGATCATGATGGACGGTGTGGAGGTGCC Direct Gain 0 0.940681175713109 NA NA prediction 0.881362351426218 Functional Gain - GCDH ENSG00000105607 CDS Human protein_coding chr19:13007178 chr19:13007178 nonsynonymous SNV 0.452 1 21 hm7G_associated_SNPs_40158 0 0 1 0 1 GCDH chr19:13007235 5'GT 13007235 Upstream 58bp 36949 chr19 7975633 7975633 1 + A G UCEC 7975633 + 7975613 7975653 41 CACCTGCGCTGAGAAGCTCAAGAAGCGGATGCAGGGCCCCA CACCTGCGCTGAGAAGCTCAGGAAGCGGATGCAGGGCCCCA Direct Gain 0 0.940657579141011 NA NA prediction 0.881315158282022 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975633 chr19:7975633 nonsynonymous SNV 0.940 1 21 hm7G_associated_SNPs_40159 0 0 1 0 2 MAP2K7 chr19:7975581 3'AG 7975581 Downstream 53bp 36950 chr19 7975633 7975633 1 + A G UCEC 7975633 + 7975613 7975653 41 CACCTGCGCTGAGAAGCTCAAGAAGCGGATGCAGGGCCCCA CACCTGCGCTGAGAAGCTCAGGAAGCGGATGCAGGGCCCCA Direct Gain 0 0.940657579141011 NA NA prediction 0.881315158282022 Functional Gain - MAP2K7 ENSG00000076984 CDS Human protein_coding chr19:7975633 chr19:7975633 nonsynonymous SNV 0.940 1 21 hm7G_associated_SNPs_40159 0 0 1 0 2 MAP2K7 chr19:7975688 5'GT 7975688 Upstream 56bp 36951 chr20 39795229 39795229 1 + C G LUAD 39795229 + 39795209 39795249 41 ACCCAACTCATATGCCATCTCTTTCCGGTGAGGGGTGTGGC ACCCAACTCATATGCCATCTGTTTCCGGTGAGGGGTGTGGC Direct Gain 0 0.94064904493988 NA NA prediction 0.881298089879761 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39795229 chr20:39795229 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_40160 0 0 1 0 1 PLCG1 chr20:39795235 5'GT 39795235 Upstream 7bp 36952 chr12 123466304 123466304 1 + A G rs74758272 123466304 + 123466284 123466324 41 CAAGAGGAGGAAGAAGAAGAAGAAGAGGAAGAAGCTGAAGA CAAGAGGAGGAAGAAGAAGAGGAAGAGGAAGAAGCTGAAGA Direct Gain 0 0.940647276417098 NA NA prediction 0.881294552834196 Functional Gain - ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123466304 chr12:123466304 nonsynonymous SNV 0.965 0 21 hm7G_associated_SNPs_40161 0 0 1 0 1 ARL6IP4 chr12:123466356 5'GT 123466356 Upstream 53bp 36953 chr12 56663999 56663999 1 + C G BLCA 56663999 + 56663979 56664019 41 ATGTTTTTTGATGAGGTTGTCAAACAGAATGTTGCTGCCTT ATGTTTTTTGATGAGGTTGTGAAACAGAATGTTGCTGCCTT Direct Gain 0 0.940626282372128 NA NA prediction 0.881252564744256 Functional Gain - COQ10A ENSG00000135469 CDS Human protein_coding chr12:56663999 chr12:56663999 synonymous SNV . 0 21 hm7G_associated_SNPs_40164 0 0 1 0 1 COQ10A chr12:56663934 3'AG 56663934 Downstream 66bp 36954 chr7 130023282 130023282 1 + C G UCEC 130023282 + 130023262 130023302 41 ATCTGGATCGACACGGGCATCCATTCCCGGGAGTGGGTCAC ATCTGGATCGACACGGGCATGCATTCCCGGGAGTGGGTCAC Direct Gain 0 0.940616694826785 NA NA prediction 0.881233389653571 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023282 chr7:130023282 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40165 0 0 0 0 2 CPA1 chr7:130023232 3'AG 130023232 Downstream 51bp 36955 chr7 130023282 130023282 1 + C G UCEC 130023282 + 130023262 130023302 41 ATCTGGATCGACACGGGCATCCATTCCCGGGAGTGGGTCAC ATCTGGATCGACACGGGCATGCATTCCCGGGAGTGGGTCAC Direct Gain 0 0.940616694826785 NA NA prediction 0.881233389653571 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130023282 chr7:130023282 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40165 0 0 0 0 2 CPA1 chr7:130023333 5'GT 130023333 Upstream 52bp 36956 chr9 5897599 5897599 1 + A G KIRC 5897599 + 5897579 5897619 41 ACAGTGATCCTGGGAGTCTTACTGCTCATCGGCTGTTGGTA ACAGTGATCCTGGGAGTCTTGCTGCTCATCGGCTGTTGGTA Direct Gain 0 0.94060995954096 NA NA prediction 0.881219919081921 Functional Gain - MLANA ENSG00000120215 CDS Human protein_coding chr9:5897599 chr9:5897599 synonymous SNV . 0 21 hm7G_associated_SNPs_40167 0 0 0 0 2 MLANA chr9:5897557 3'AG 5897557 Downstream 43bp 36957 chr9 5897599 5897599 1 + A G KIRC 5897599 + 5897579 5897619 41 ACAGTGATCCTGGGAGTCTTACTGCTCATCGGCTGTTGGTA ACAGTGATCCTGGGAGTCTTGCTGCTCATCGGCTGTTGGTA Direct Gain 0 0.94060995954096 NA NA prediction 0.881219919081921 Functional Gain - MLANA ENSG00000120215 CDS Human protein_coding chr9:5897599 chr9:5897599 synonymous SNV . 0 21 hm7G_associated_SNPs_40167 0 0 0 0 2 MLANA chr9:5897653 5'GT 5897653 Upstream 55bp 36958 chr7 6441993 6441993 1 + C G LUSC 6441993 + 6441973 6442013 41 GCGCTCACACAGCGAGGCCTCAAGACAGTGTTTGACGAAGC GCGCTCACACAGCGAGGCCTGAAGACAGTGTTTGACGAAGC Direct Gain 0 0.940606824981113 NA NA prediction 0.881213649962226 Functional Gain - RAC1 ENSG00000136238 CDS Human protein_coding chr7:6441993 chr7:6441993 synonymous SNV . 0 21 hm7G_associated_SNPs_40168 0 0 1 0 1 RAC1 chr7:6441947 3'AG 6441947 Downstream 47bp 36959 chr19 17973794 17973794 1 + C G rs141247185 17973794 + 17973774 17973814 41 ATCATGAAGGTGGAGGAGATCGCGGCCAGCAAGTGCCGCCG ATCATGAAGGTGGAGGAGATGGCGGCCAGCAAGTGCCGCCG Direct Gain 0 0.940578390753639 NA NA prediction 0.881156781507279 Functional Gain - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973794 chr19:17973794 nonsynonymous SNV 0.942 2 21 hm7G_associated_SNPs_40171 0 0 0 0 2 RPL18A chr19:17973727 3'AG 17973727 Downstream 68bp 36960 chr19 17973794 17973794 1 + C G rs141247185 17973794 + 17973774 17973814 41 ATCATGAAGGTGGAGGAGATCGCGGCCAGCAAGTGCCGCCG ATCATGAAGGTGGAGGAGATGGCGGCCAGCAAGTGCCGCCG Direct Gain 0 0.940578390753639 NA NA prediction 0.881156781507279 Functional Gain - RPL18A ENSG00000105640 CDS Human protein_coding chr19:17973794 chr19:17973794 nonsynonymous SNV 0.942 2 21 hm7G_associated_SNPs_40171 0 0 0 0 2 RPL18A chr19:17973836 5'GT 17973836 Upstream 43bp 36961 chr8 87126017 87126017 1 + T G LUSC 87126017 + 87125997 87126037 41 CCTCTTACTGTTTCCAAAATTGACACTGAGATGAGGAAAAG CCTCTTACTGTTTCCAAAATGGACACTGAGATGAGGAAAAG Direct Gain 0 0.940544419133873 NA NA prediction 0.881088838267747 Functional Gain - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87126017 chr8:87126017 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40173 0 0 0 0 2 ATP6V0D2 chr8:87125938 3'AG 87125938 Downstream 80bp 36962 chr8 87126017 87126017 1 + T G LUSC 87126017 + 87125997 87126037 41 CCTCTTACTGTTTCCAAAATTGACACTGAGATGAGGAAAAG CCTCTTACTGTTTCCAAAATGGACACTGAGATGAGGAAAAG Direct Gain 0 0.940544419133873 NA NA prediction 0.881088838267747 Functional Gain - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87126017 chr8:87126017 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40173 0 0 0 0 2 ATP6V0D2 chr8:87126109 5'GT 87126109 Upstream 93bp 36963 chr4 110790863 110790863 1 + T G SKCM 110790863 + 110790843 110790883 41 TGAGCTTGACAGGCATTTCTTCCAAAGACGCTGGGGATTAC TGAGCTTGACAGGCATTTCTGCCAAAGACGCTGGGGATTAC Direct Gain 0 0.940500673373713 NA NA prediction 0.881001346747426 Functional Gain - LRIT3 ENSG00000183423 CDS Human protein_coding chr4:110790863 chr4:110790863 nonsynonymous SNV 0.974 1 21 hm7G_associated_SNPs_40174 0 0 0 0 1 LRIT3 chr4:110790801 3'AG 110790801 Downstream 63bp 36964 chr20 30681703 30681703 1 + A G UCEC 30681703 + 30681683 30681723 41 CTTCATCGAGCAGAGGAACTACATCCACCGAGACCTCCGAG CTTCATCGAGCAGAGGAACTGCATCCACCGAGACCTCCGAG Direct Gain 0 0.940444728270034 NA NA prediction 0.880889456540068 Functional Gain - HCK ENSG00000101336 CDS Human protein_coding chr20:30681703 chr20:30681703 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40176 0 0 0 0 1 HCK chr20:30681666 3'AG 30681666 Downstream 38bp 36965 chr1 224380108 224380108 1 + T G PAAD 224380108 + 224380088 224380128 41 ATAAAAGTACTGTATGATTTTGTGATGGATGATACAATAAG ATAAAAGTACTGTATGATTTGGTGATGGATGATACAATAAG Direct Gain 0 0.940418396926418 NA NA prediction 0.880836793852836 Functional Gain - DEGS1 ENSG00000143753 CDS Human protein_coding chr1:224380108 chr1:224380108 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40179 0 0 1 0 1 DEGS1 chr1:224380034 3'AG 224380034 Downstream 75bp 36966 chr19 58904758 58904758 1 + C G BLCA 58904758 + 58904738 58904778 41 GTCCTGGTGAACGCCATCATCAACAGTGGTCCCCGGGAGGA GTCCTGGTGAACGCCATCATGAACAGTGGTCCCCGGGAGGA Direct Gain 0 0.940387213406355 NA NA prediction 0.88077442681271 Functional Gain - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904758 chr19:58904758 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40180 0 0 1 0 2 RPS5 chr19:58904726 3'AG 58904726 Downstream 33bp 36967 chr19 58904758 58904758 1 + C G BLCA 58904758 + 58904738 58904778 41 GTCCTGGTGAACGCCATCATCAACAGTGGTCCCCGGGAGGA GTCCTGGTGAACGCCATCATGAACAGTGGTCCCCGGGAGGA Direct Gain 0 0.940387213406355 NA NA prediction 0.88077442681271 Functional Gain - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904758 chr19:58904758 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40180 0 0 1 0 2 RPS5 chr19:58904854 5'GT 58904854 Upstream 97bp 36968 chr20 34208840 34208840 1 + C G BLCA 34208840 + 34208820 34208860 41 CCAAGGTGAAGATCCAGATTCTAAGCAACTGGGGCCACCCC CCAAGGTGAAGATCCAGATTGTAAGCAACTGGGGCCACCCC Direct Gain 0 0.94037734012256 NA NA prediction 0.88075468024512 Functional Gain - SPAG4 ENSG00000061656 CDS Human protein_coding chr20:34208840 chr20:34208840 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40181 0 0 1 0 1 SPAG4 chr20:34208798 3'AG 34208798 Downstream 43bp 36969 chr18 2587866 2587866 1 + T G COAD 2587866 + 2587846 2587886 41 CATAAAATGCTATGAGAGTTTTATGAGTGGTGCCGACAGCT CATAAAATGCTATGAGAGTTGTATGAGTGGTGCCGACAGCT Direct Gain 0 0.940336483456126 NA NA prediction 0.880672966912252 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2587866 chr18:2587866 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_40182 0 0 1 0 2 NDC80 chr18:2587829 3'AG 2587829 Downstream 38bp 36970 chr18 2587866 2587866 1 + T G COAD 2587866 + 2587846 2587886 41 CATAAAATGCTATGAGAGTTTTATGAGTGGTGCCGACAGCT CATAAAATGCTATGAGAGTTGTATGAGTGGTGCCGACAGCT Direct Gain 0 0.940336483456126 NA NA prediction 0.880672966912252 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2587866 chr18:2587866 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_40182 0 0 1 0 2 NDC80 chr18:2587922 5'GT 2587922 Upstream 57bp 36971 chrX 70522267 70522267 1 + A G COAD 70522267 + 70522247 70522287 41 CTTATCTATACTAGGGCTGTACTATGGGACCACACTGTGCT CTTATCTATACTAGGGCTGTGCTATGGGACCACACTGTGCT Direct Gain 0 0.940331232388168 NA NA prediction 0.880662464776336 Functional Gain - ITGB1BP2 ENSG00000147166 CDS Human protein_coding chrX:70522267 chrX:70522267 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40183 0 0 1 0 1 ITGB1BP2 chrX:70522261 3'AG 70522261 Downstream 7bp 36972 chr17 73016618 73016618 1 + C G BLCA 73016618 + 73016598 73016638 41 AACAGGTTAGGAGAGTTGATCCTCACCTCTGAGAGCAGCCG AACAGGTTAGGAGAGTTGATGCTCACCTCTGAGAGCAGCCG Direct Gain 0 0.940315729058892 NA NA prediction 0.880631458117784 Functional Gain - MRPL58 ENSG00000167862 CDS Human protein_coding chr17:73016618 chr17:73016618 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_40185 0 0 1 0 1 MRPL58 chr17:73016583 3'AG 73016583 Downstream 36bp 36973 chr9 132482960 132482960 1 + A G rs567572265 132482960 + 132482940 132482980 41 TGCCTCGCTGCTCAAGTCCTACAGCCAGGAGGCCGCCATCG TGCCTCGCTGCTCAAGTCCTGCAGCCAGGAGGCCGCCATCG Direct Gain 0 0.940309409700295 NA NA prediction 0.880618819400589 Functional Gain - PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482960 chr9:132482960 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40186 0 0 0 0 2 PRRX2 chr9:132482875 3'AG 132482875 Downstream 86bp 36974 chr9 132482960 132482960 1 + A G rs567572265 132482960 + 132482940 132482980 41 TGCCTCGCTGCTCAAGTCCTACAGCCAGGAGGCCGCCATCG TGCCTCGCTGCTCAAGTCCTGCAGCCAGGAGGCCGCCATCG Direct Gain 0 0.940309409700295 NA NA prediction 0.880618819400589 Functional Gain - PRRX2 ENSG00000167157 CDS Human protein_coding chr9:132482960 chr9:132482960 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40186 0 0 0 0 2 PRRX2 chr9:132483053 5'GT 132483053 Upstream 94bp 36975 chr1 76255705 76255705 1 + A G rs182467474 76255705 + 76255685 76255725 41 GTGGAATATGTTAAAGGTCTACAGAAAGAAGATGGTTCTTT GTGGAATATGTTAAAGGTCTGCAGAAAGAAGATGGTTCTTT Direct Gain 0 0.940287131925777 NA NA prediction 0.880574263851553 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255705 chr1:76255705 synonymous SNV . 0 21 hm7G_associated_SNPs_40187 0 0 1 0 2 RABGGTB chr1:76255637 3'AG 76255637 Downstream 69bp 36976 chr1 76255705 76255705 1 + A G rs182467474 76255705 + 76255685 76255725 41 GTGGAATATGTTAAAGGTCTACAGAAAGAAGATGGTTCTTT GTGGAATATGTTAAAGGTCTGCAGAAAGAAGATGGTTCTTT Direct Gain 0 0.940287131925777 NA NA prediction 0.880574263851553 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76255705 chr1:76255705 synonymous SNV . 0 21 hm7G_associated_SNPs_40187 0 0 1 0 2 RABGGTB chr1:76255742 5'GT 76255742 Upstream 38bp 36977 chr7 31735133 31735133 1 + A G LUAD 31735133 + 31735113 31735153 41 GTGATCTCAAAAAGAAGCCTAGAAAGGGAAAAAATGTACAG GTGATCTCAAAAAGAAGCCTGGAAAGGGAAAAAATGTACAG Direct Gain 0 0.940281174755509 NA NA prediction 0.880562349511017 Functional Gain - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31735133 chr7:31735133 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_40188 0 0 0 0 1 PPP1R17 chr7:31735083 3'AG 31735083 Downstream 51bp 36978 chr9 108468028 108468028 1 + C G LUSC 108468028 + 108468008 108468048 41 TAACATATTACTGGCATCTTCAATCTGGTAAGCTGCCAGTA TAACATATTACTGGCATCTTGAATCTGGTAAGCTGCCAGTA Direct Gain 0 0.94027415544027 NA NA prediction 0.880548310880541 Functional Gain - TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108468028 chr9:108468028 stopgain 1.000 0 21 hm7G_associated_SNPs_40189 0 0 1 0 1 TMEM38B chr9:108468034 5'GT 108468034 Upstream 7bp 36979 chr9 26990141 26990141 1 + C G LUAD 26990141 + 26990121 26990161 41 ACTTTATTCAGCTTAAAGCTCAAAATGATCGAGAAACACAA ACTTTATTCAGCTTAAAGCTGAAAATGATCGAGAAACACAA Direct Gain 0 0.940266444384332 NA NA prediction 0.880532888768663 Functional Gain - IFT74 ENSG00000096872 CDS Human protein_coding chr9:26990141 chr9:26990141 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40190 0 0 0 0 1 IFT74 chr9:26990132 3'AG 26990132 Downstream 10bp 36980 chr1 42925276 42925276 1 + A G SARC 42925276 + 42925256 42925296 41 TTTCTTTTTCCAATACAGATAACAATGAAGATGGTGCCAAA TTTCTTTTTCCAATACAGATGACAATGAAGATGGTGCCAAA Direct Gain 0 0.940264610018989 NA NA prediction 0.880529220037979 Functional Gain - PPCS ENSG00000127125 CDS Human protein_coding chr1:42925276 chr1:42925276 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40191 0 0 0 0 1 PPCS chr1:42925274 3'AG 42925274 Downstream 3bp 36981 chr4 146601498 146601498 1 + A G UCEC 146601498 + 146601478 146601518 41 AGATTCTTCCGTGACAACATACACAGGCAGTTACCGGAAAA AGATTCTTCCGTGACAACATGCACAGGCAGTTACCGGAAAA Direct Gain 0 0.940261040940697 NA NA prediction 0.880522081881394 Functional Gain - C4orf51 ENSG00000237136 CDS Human protein_coding chr4:146601498 chr4:146601498 nonsynonymous SNV 0.021 3 21 hm7G_associated_SNPs_40192 0 0 0 0 1 C4orf51 chr4:146601588 5'GT 146601588 Upstream 91bp 36982 chr12 58015619 58015619 1 + C G rs184174469 58015619 + 58015599 58015639 41 ACGCCGATCCCGGGGGAAGTCGTCTTGGTGAGGATGGCCGT ACGCCGATCCCGGGGGAAGTGGTCTTGGTGAGGATGGCCGT Direct Gain 0 0.940252244636111 NA NA prediction 0.880504489272221 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015619 chr12:58015619 synonymous SNV . 0 21 hm7G_associated_SNPs_40194 0 0 1 3 1 SLC26A10 chr12:58015625 5'GT 58015625 Upstream 7bp 36983 chr20 23472475 23472475 1 + C G BLCA 23472475 + 23472455 23472495 41 TTTGCCATGCAAGAATACAACAAAGAGAGCGAGGACAAGTA TTTGCCATGCAAGAATACAAGAAAGAGAGCGAGGACAAGTA Direct Gain 0 0.940195302782141 NA NA prediction 0.880390605564283 Functional Gain - CST8 ENSG00000125815 CDS Human protein_coding chr20:23472475 chr20:23472475 nonsynonymous SNV 0.359 4 21 hm7G_associated_SNPs_40197 0 0 0 0 1 CST8 chr20:23472535 5'GT 23472535 Upstream 61bp 36984 chr17 64880717 64880717 1 + A G LUSC 64880717 + 64880697 64880737 41 GACCAAGGATGCAGAGACCTACTTCAACTACAAGTATGGGT GACCAAGGATGCAGAGACCTGCTTCAACTACAAGTATGGGT Direct Gain 0 0.940178290116597 NA NA prediction 0.880356580233193 Functional Gain - CACNG5 ENSG00000075429 CDS Human protein_coding chr17:64880717 chr17:64880717 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40198 0 0 0 0 1 CACNG5 chr17:64880778 5'GT 64880778 Upstream 62bp 36985 chr3 126153150 126153150 1 + A G rs148127202 126153150 + 126153130 126153170 41 CACCAGCTGGATGAGCTGCTAGAGAACCTGGAGCACGTGCC CACCAGCTGGATGAGCTGCTGGAGAACCTGGAGCACGTGCC Direct Gain 0 0.940164549255466 NA NA prediction 0.880329098510931 Functional Gain - CFAP100 ENSG00000163885 CDS Human protein_coding chr3:126153150 chr3:126153150 synonymous SNV . 0 21 hm7G_associated_SNPs_40199 0 0 0 0 1 CFAP100 chr3:126153224 5'GT 126153224 Upstream 75bp 36986 chr1 40954798 40954798 1 + C G LUSC 40954798 + 40954778 40954818 41 GACATATCTATTGACTTCACCCAGGAAGAGTGGGGGCAGCT GACATATCTATTGACTTCACGCAGGAAGAGTGGGGGCAGCT Direct Gain 0 0.940155907131297 NA NA prediction 0.880311814262594 Functional Gain - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954798 chr1:40954798 synonymous SNV . 0 21 hm7G_associated_SNPs_40200 0 0 1 0 2 ZFP69 chr1:40954760 3'AG 40954760 Downstream 39bp 36987 chr1 40954798 40954798 1 + C G LUSC 40954798 + 40954778 40954818 41 GACATATCTATTGACTTCACCCAGGAAGAGTGGGGGCAGCT GACATATCTATTGACTTCACGCAGGAAGAGTGGGGGCAGCT Direct Gain 0 0.940155907131297 NA NA prediction 0.880311814262594 Functional Gain - ZFP69 ENSG00000187815 CDS Human protein_coding chr1:40954798 chr1:40954798 synonymous SNV . 0 21 hm7G_associated_SNPs_40200 0 0 1 0 2 ZFP69 chr1:40954886 5'GT 40954886 Upstream 89bp 36988 chr3 159711592 159711592 1 + A G rs2230052 159711592 + 159711572 159711612 41 CCTAAGAGGCAGATCTTTCTAGATCAAAACATGCTGGCAGT CCTAAGAGGCAGATCTTTCTGGATCAAAACATGCTGGCAGT Direct Gain 0 0.940151113609756 NA NA prediction 0.880302227219511 Functional Gain - IL12A ENSG00000168811 CDS Human protein_coding chr3:159711592 chr3:159711592 synonymous SNV . 0 21 hm7G_associated_SNPs_40201 0 0 0 0 1 IL12A chr3:159711631 5'GT 159711631 Upstream 40bp 36989 chr17 42979825 42979825 1 + A G STAD 42979825 + 42979805 42979845 41 CCAGAGCGCTACCAGGCTCTACTGCAGCTTGGGGGTCCAAG CCAGAGCGCTACCAGGCTCTGCTGCAGCTTGGGGGTCCAAG Direct Gain 0 0.940131314919401 NA NA prediction 0.880262629838802 Functional Gain - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42979825 chr17:42979825 synonymous SNV . 0 21 hm7G_associated_SNPs_40202 0 0 0 0 2 CCDC103 chr17:42979733 3'AG 42979733 Downstream 93bp 36990 chr17 42979825 42979825 1 + A G STAD 42979825 + 42979805 42979845 41 CCAGAGCGCTACCAGGCTCTACTGCAGCTTGGGGGTCCAAG CCAGAGCGCTACCAGGCTCTGCTGCAGCTTGGGGGTCCAAG Direct Gain 0 0.940131314919401 NA NA prediction 0.880262629838802 Functional Gain - CCDC103 ENSG00000167131 CDS Human protein_coding chr17:42979825 chr17:42979825 synonymous SNV . 0 21 hm7G_associated_SNPs_40202 0 0 0 0 2 CCDC103 chr17:42979736 3'AG 42979736 Downstream 90bp 36991 chr1 1396211 1396211 1 + C G rs368237530 1396211 + 1396191 1396231 41 ATCGACGTGATGGTCCACTTCGACCTGCCAGGGCAGGAGGA ATCGACGTGATGGTCCACTTGGACCTGCCAGGGCAGGAGGA Direct Gain 0 0.940078927992178 NA NA prediction 0.880157855984355 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1396211 chr1:1396211 nonsynonymous SNV 0.000 2 21 hm7G_associated_SNPs_40204 0 0 0 0 2 ATAD3C chr1:1396130 3'AG 1396130 Downstream 82bp 36992 chr1 1396211 1396211 1 + C G rs368237530 1396211 + 1396191 1396231 41 ATCGACGTGATGGTCCACTTCGACCTGCCAGGGCAGGAGGA ATCGACGTGATGGTCCACTTGGACCTGCCAGGGCAGGAGGA Direct Gain 0 0.940078927992178 NA NA prediction 0.880157855984355 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1396211 chr1:1396211 nonsynonymous SNV 0.000 2 21 hm7G_associated_SNPs_40204 0 0 0 0 2 ATAD3C chr1:1396297 5'GT 1396297 Upstream 87bp 36993 chrX 150156339 150156339 1 + A G rs139826031 150156339 + 150156319 150156359 41 AAGGTGGAAGAGGAAGATGAAGAAGAGGAGGAGGAAGAAGA AAGGTGGAAGAGGAAGATGAGGAAGAGGAGGAGGAAGAAGA Direct Gain 0 0.940078425516905 NA NA prediction 0.88015685103381 Functional Gain - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150156339 chrX:150156339 synonymous SNV . 0 21 hm7G_associated_SNPs_40205 0 0 1 0 1 HMGB3 chrX:150156250 3'AG 150156250 Downstream 90bp 36994 chr14 93678456 93678456 1 + C G READ 93678456 + 93678436 93678476 41 GCATTTGCAAGAGACCTTATCCTGATCCTGAAGACGAGGTA GCATTTGCAAGAGACCTTATGCTGATCCTGAAGACGAGGTA Direct Gain 0 0.940066440937585 NA NA prediction 0.880132881875169 Functional Gain - UBR7 ENSG00000012963;ENSG00000259066 CDS Human other chr14:93678456 chr14:93678456 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40206 0 0 1 0 2 UBR7 chr14:93678378 3'AG 93678378 Downstream 79bp 36995 chr14 93678456 93678456 1 + C G READ 93678456 + 93678436 93678476 41 GCATTTGCAAGAGACCTTATCCTGATCCTGAAGACGAGGTA GCATTTGCAAGAGACCTTATGCTGATCCTGAAGACGAGGTA Direct Gain 0 0.940066440937585 NA NA prediction 0.880132881875169 Functional Gain - UBR7 ENSG00000012963;ENSG00000259066 CDS Human other chr14:93678456 chr14:93678456 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40206 0 0 1 0 2 UBR7 chr14:93678473 5'GT 93678473 Upstream 18bp 36996 chr9 77752522 77752522 1 + T G LGG 77752522 + 77752502 77752542 41 GCAGATATCGTCCAGTTGCTTCTGGCAAAAGGTAAAGTTTG GCAGATATCGTCCAGTTGCTGCTGGCAAAAGGTAAAGTTTG Direct Gain 0 0.940053093100884 NA NA prediction 0.880106186201768 Functional Gain - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77752522 chr9:77752522 synonymous SNV . 0 21 hm7G_associated_SNPs_40207 0 0 1 0 2 OSTF1 chr9:77752454 3'AG 77752454 Downstream 69bp 36997 chr9 77752522 77752522 1 + T G LGG 77752522 + 77752502 77752542 41 GCAGATATCGTCCAGTTGCTTCTGGCAAAAGGTAAAGTTTG GCAGATATCGTCCAGTTGCTGCTGGCAAAAGGTAAAGTTTG Direct Gain 0 0.940053093100884 NA NA prediction 0.880106186201768 Functional Gain - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77752522 chr9:77752522 synonymous SNV . 0 21 hm7G_associated_SNPs_40207 0 0 1 0 2 OSTF1 chr9:77752532 5'GT 77752532 Upstream 11bp 36998 chrX 37663164 37663164 1 + A G OV 37663164 + 37663144 37663184 41 TTTCAAAACCATCGAGCTACAGATGAAGAAGAAGGGGTTCA TTTCAAAACCATCGAGCTACGGATGAAGAAGAAGGGGTTCA Direct Gain 0 0.939985151024077 NA NA prediction 0.879970302048155 Functional Gain - CYBB ENSG00000165168 CDS Human protein_coding chrX:37663164 chrX:37663164 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_40209 0 0 0 0 1 CYBB chrX:37663130 3'AG 37663130 Downstream 35bp 36999 chr14 103174865 103174865 1 + A G LUSC 103174865 + 103174845 103174885 41 CTTGGAAGAAGACGAGGACTAAAACTAGTGTGATGGATCGC CTTGGAAGAAGACGAGGACTGAAACTAGTGTGATGGATCGC Direct Gain 0 0.93997389168652 NA NA prediction 0.879947783373039 Functional Gain - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103174865 chr14:103174865 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40210 0 0 1 0 2 RCOR1 chr14:103174802 3'AG 103174802 Downstream 64bp 37000 chr14 103174865 103174865 1 + A G LUSC 103174865 + 103174845 103174885 41 CTTGGAAGAAGACGAGGACTAAAACTAGTGTGATGGATCGC CTTGGAAGAAGACGAGGACTGAAACTAGTGTGATGGATCGC Direct Gain 0 0.93997389168652 NA NA prediction 0.879947783373039 Functional Gain - RCOR1 ENSG00000089902 CDS Human protein_coding chr14:103174865 chr14:103174865 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40210 0 0 1 0 2 RCOR1 chr14:103174920 5'GT 103174920 Upstream 56bp 37001 chr12 6978532 6978532 1 + C G LUAD 6978532 + 6978512 6978552 41 ATCACTGAGAAGGTTGTTTTCGAGCAGACAAAGGTCATCGC ATCACTGAGAAGGTTGTTTTGGAGCAGACAAAGGTCATCGC Direct Gain 0 0.939968307268604 NA NA prediction 0.879936614537207 Functional Gain - TPI1 ENSG00000111669 CDS Human protein_coding chr12:6978532 chr12:6978532 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_40211 0 0 1 0 1 TPI1 chr12:6978554 5'GT 6978554 Upstream 23bp 37002 chr18 61569049 61569049 1 + T G STAD 61569049 + 61569029 61569069 41 CCTGGTGAATGCTGTCTACTTCAAAGGAAAGTGGAAAACTC CCTGGTGAATGCTGTCTACTGCAAAGGAAAGTGGAAAACTC Direct Gain 0 0.939941211192852 NA NA prediction 0.879882422385704 Functional Gain - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61569049 chr18:61569049 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40213 0 0 0 0 2 SERPINB2 chr18:61568974 3'AG 61568974 Downstream 76bp 37003 chr18 61569049 61569049 1 + T G STAD 61569049 + 61569029 61569069 41 CCTGGTGAATGCTGTCTACTTCAAAGGAAAGTGGAAAACTC CCTGGTGAATGCTGTCTACTGCAAAGGAAAGTGGAAAACTC Direct Gain 0 0.939941211192852 NA NA prediction 0.879882422385704 Functional Gain - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61569049 chr18:61569049 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40213 0 0 0 0 2 SERPINB2 chr18:61569116 5'GT 61569116 Upstream 68bp 37004 chr19 55897779 55897779 1 + C G LUAD 55897779 + 55897759 55897799 41 AACTGCTCCAGTTTCCTGATCAAGAGGAATAAGCAGACCTA AACTGCTCCAGTTTCCTGATGAAGAGGAATAAGCAGACCTA Direct Gain 0 0.939931193308378 NA NA prediction 0.879862386616757 Functional Gain - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55897779 chr19:55897779 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40214 0 0 1 0 2 RPL28 chr19:55897718 3'AG 55897718 Downstream 62bp 37005 chr19 55897779 55897779 1 + C G LUAD 55897779 + 55897759 55897799 41 AACTGCTCCAGTTTCCTGATCAAGAGGAATAAGCAGACCTA AACTGCTCCAGTTTCCTGATGAAGAGGAATAAGCAGACCTA Direct Gain 0 0.939931193308378 NA NA prediction 0.879862386616757 Functional Gain - RPL28 ENSG00000108107 CDS Human protein_coding chr19:55897779 chr19:55897779 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40214 0 0 1 0 2 RPL28 chr19:55897806 5'GT 55897806 Upstream 28bp 37006 chr16 3707091 3707091 1 + C G rs8176938 3707091 + 3707071 3707111 41 TATGACGTCTACCTGGATGTCCAAGAGAAATGGGGCTTGGA TATGACGTCTACCTGGATGTGCAAGAGAAATGGGGCTTGGA Direct Gain 0 0.939858433441414 NA NA prediction 0.879716866882829 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707091 chr16:3707091 synonymous SNV . 0 21 hm7G_associated_SNPs_40216 0 0 1 0 2 DNASE1 chr16:3707000 3'AG 3707000 Downstream 92bp 37007 chr16 3707091 3707091 1 + C G rs8176938 3707091 + 3707071 3707111 41 TATGACGTCTACCTGGATGTCCAAGAGAAATGGGGCTTGGA TATGACGTCTACCTGGATGTGCAAGAGAAATGGGGCTTGGA Direct Gain 0 0.939858433441414 NA NA prediction 0.879716866882829 Functional Gain - DNASE1 ENSG00000213918 CDS Human protein_coding chr16:3707091 chr16:3707091 synonymous SNV . 0 21 hm7G_associated_SNPs_40216 0 0 1 0 2 DNASE1 chr16:3707112 5'GT 3707112 Upstream 22bp 37008 chr3 101474392 101474392 1 + C G LUSC 101474392 + 101474372 101474412 41 TCACTTCTACACTAGGTCTTCAAACTGCAGAGGATGCCAAA TCACTTCTACACTAGGTCTTGAAACTGCAGAGGATGCCAAA Direct Gain 0 0.9398503950946 NA NA prediction 0.8797007901892 Functional Gain - CEP97 ENSG00000182504 CDS Human protein_coding chr3:101474392 chr3:101474392 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40217 0 0 1 0 1 CEP97 chr3:101474438 5'GT 101474438 Upstream 47bp 37009 chr15 69747786 69747786 1 + A G LIHC 69747786 + 69747766 69747806 41 GCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGA GCTGAGGAGAAGAAAGTGGAGGCAAAGAAAGAAGAATCCGA Direct Gain 0 0.939819971871326 NA NA prediction 0.879639943742652 Functional Gain - RPLP1 ENSG00000137818 CDS Human protein_coding chr15:69747786 chr15:69747786 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_40218 0 0 1 0 1 RPLP1 chr15:69747767 3'AG 69747767 Downstream 20bp 37010 chr1 55473981 55473981 1 + C G OV 55473981 + 55473961 55474001 41 GCAGCAGCCCCAATGCATCTCCACATGACAGGGAGGAAGCT GCAGCAGCCCCAATGCATCTGCACATGACAGGGAGGAAGCT Direct Gain 0 0.939808530045977 NA NA prediction 0.879617060091954 Functional Gain - BSND ENSG00000162399 CDS Human protein_coding chr1:55473981 chr1:55473981 nonsynonymous SNV 0.002 0 21 hm7G_associated_SNPs_40219 0 0 0 0 1 BSND chr1:55473887 3'AG 55473887 Downstream 95bp 37011 chr1 63066796 63066796 1 + C G BLCA 63066796 + 63066776 63066816 41 ACCCACAGAAATTTCTCTATCTTCCAAGCCAAGAGCACCAA ACCCACAGAAATTTCTCTATGTTCCAAGCCAAGAGCACCAA Direct Gain 0 0.939805579732995 NA NA prediction 0.879611159465989 Functional Gain - ANGPTL3 ENSG00000132855 CDS Human protein_coding chr1:63066796 chr1:63066796 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40220 0 0 0 0 2 ANGPTL3 chr1:63066753 3'AG 63066753 Downstream 44bp 37012 chr1 63066796 63066796 1 + C G BLCA 63066796 + 63066776 63066816 41 ACCCACAGAAATTTCTCTATCTTCCAAGCCAAGAGCACCAA ACCCACAGAAATTTCTCTATGTTCCAAGCCAAGAGCACCAA Direct Gain 0 0.939805579732995 NA NA prediction 0.879611159465989 Functional Gain - ANGPTL3 ENSG00000132855 CDS Human protein_coding chr1:63066796 chr1:63066796 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40220 0 0 0 0 2 ANGPTL3 chr1:63066867 5'GT 63066867 Upstream 72bp 37013 chr5 79375894 79375894 1 + A G DLBC 79375894 + 79375874 79375914 41 GCACAGGCCCCAGGTGGGCTACATCAGGTAGGTAGAGGCCC GCACAGGCCCCAGGTGGGCTGCATCAGGTAGGTAGAGGCCC Direct Gain 0 0.939794868512994 NA NA prediction 0.879589737025988 Functional Gain - THBS4 ENSG00000113296 CDS Human protein_coding chr5:79375894 chr5:79375894 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_40221 0 0 0 0 1 THBS4 chr5:79375900 5'GT 79375900 Upstream 7bp 37014 chr1 84962024 84962024 1 + A G KIRC 84962024 + 84962004 84962044 41 AGAAAGGAACCTTTGATTCTAAATATGGAGAGTATGAATGG AGAAAGGAACCTTTGATTCTGAATATGGAGAGTATGAATGG Direct Gain 0 0.939792728233156 NA NA prediction 0.879585456466311 Functional Gain - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84962024 chr1:84962024 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40222 0 0 1 0 2 RPF1 chr1:84961927 3'AG 84961927 Downstream 98bp 37015 chr1 84962024 84962024 1 + A G KIRC 84962024 + 84962004 84962044 41 AGAAAGGAACCTTTGATTCTAAATATGGAGAGTATGAATGG AGAAAGGAACCTTTGATTCTGAATATGGAGAGTATGAATGG Direct Gain 0 0.939792728233156 NA NA prediction 0.879585456466311 Functional Gain - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84962024 chr1:84962024 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40222 0 0 1 0 2 RPF1 chr1:84962053 5'GT 84962053 Upstream 30bp 37016 chr6 88769202 88769202 1 + T G UCEC 88769202 + 88769182 88769222 41 ACTTGTAAATGATTCAGCAATCCTAGAAGTACGCAAGGAAA ACTTGTAAATGATTCAGCAAGCCTAGAAGTACGCAAGGAAA Direct Gain 0 0.939746905538359 NA NA prediction 0.879493811076718 Functional Gain - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88769202 chr6:88769202 nonsynonymous SNV 0.823 1 21 hm7G_associated_SNPs_40224 0 0 0 0 1 SPACA1 chr6:88769171 3'AG 88769171 Downstream 32bp 37017 chr12 124094567 124094567 1 + C G BRCA 124094567 + 124094547 124094587 41 CAGACGCAGGAAGTGGAGAACCTGGTGAGAGCGGGCCTCCG CAGACGCAGGAAGTGGAGAAGCTGGTGAGAGCGGGCCTCCG Direct Gain 0 0.939695126937293 NA NA prediction 0.879390253874586 Functional Gain - DDX55 ENSG00000111364 CDS Human protein_coding chr12:124094567 chr12:124094567 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_40226 0 0 1 0 1 DDX55 chr12:124094486 3'AG 124094486 Downstream 82bp 37018 chr10 95386569 95386569 1 + C G CESC 95386569 + 95386549 95386589 41 TCTCTTCCCCAAGGACGCCTCCTGCAGACCACTGGACACTC TCTCTTCCCCAAGGACGCCTGCTGCAGACCACTGGACACTC Direct Gain 0 0.939654749935967 NA NA prediction 0.879309499871935 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95386569 chr10:95386569 nonsynonymous SNV 0.893 3 21 hm7G_associated_SNPs_40227 0 0 0 0 2 PDE6C chr10:95386562 3'AG 95386562 Downstream 8bp 37019 chr10 95386569 95386569 1 + C G CESC 95386569 + 95386549 95386589 41 TCTCTTCCCCAAGGACGCCTCCTGCAGACCACTGGACACTC TCTCTTCCCCAAGGACGCCTGCTGCAGACCACTGGACACTC Direct Gain 0 0.939654749935967 NA NA prediction 0.879309499871935 Functional Gain - PDE6C ENSG00000095464 CDS Human protein_coding chr10:95386569 chr10:95386569 nonsynonymous SNV 0.893 3 21 hm7G_associated_SNPs_40227 0 0 0 0 2 PDE6C chr10:95386628 5'GT 95386628 Upstream 60bp 37020 chr20 76711 76711 1 + A G UCEC 76711 + 76691 76731 41 GCAGAAGACGATGTTTAGATACTGAAAGGTACATACTTCTT GCAGAAGACGATGTTTAGATGCTGAAAGGTACATACTTCTT Direct Gain 0 0.939647957169978 NA NA prediction 0.879295914339957 Functional Gain - DEFB125 ENSG00000178591 CDS Human protein_coding chr20:76711 chr20:76711 nonsynonymous SNV 0.097 0 21 hm7G_associated_SNPs_40228 0 0 0 0 1 DEFB125 chr20:76646 3'AG 76646 Downstream 66bp 37021 chr22 29881748 29881748 1 + A G LUAD 29881748 + 29881728 29881768 41 TGGACGCTGAGCTGAGGAACACCAAGTGGGAGATGGCCGCC TGGACGCTGAGCTGAGGAACGCCAAGTGGGAGATGGCCGCC Direct Gain 0 0.939629578455512 NA NA prediction 0.879259156911025 Functional Gain - NEFH ENSG00000100285 CDS Human protein_coding chr22:29881748 chr22:29881748 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_40229 0 0 0 0 2 NEFH chr22:29881712 3'AG 29881712 Downstream 37bp 37022 chr22 29881748 29881748 1 + A G LUAD 29881748 + 29881728 29881768 41 TGGACGCTGAGCTGAGGAACACCAAGTGGGAGATGGCCGCC TGGACGCTGAGCTGAGGAACGCCAAGTGGGAGATGGCCGCC Direct Gain 0 0.939629578455512 NA NA prediction 0.879259156911025 Functional Gain - NEFH ENSG00000100285 CDS Human protein_coding chr22:29881748 chr22:29881748 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_40229 0 0 0 0 2 NEFH chr22:29881836 5'GT 29881836 Upstream 89bp 37023 chr3 186289893 186289893 1 + C G HNSC 186289893 + 186289873 186289913 41 CTACTTCCCAGACGAGATTTCTATAAGATCTTGGGGGTGCC CTACTTCCCAGACGAGATTTGTATAAGATCTTGGGGGTGCC Direct Gain 0 0.939615665833609 NA NA prediction 0.879231331667218 Functional Gain - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186289893 chr3:186289893 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40230 0 0 1 0 1 DNAJB11 chr3:186289884 3'AG 186289884 Downstream 10bp 37024 chr4 107249366 107249366 1 + C G rs146841053 107249366 + 107249346 107249386 41 ATAAAAGGAGGAACAGGAGACGAAAAGAAAGCGAAAGAGAA ATAAAAGGAGGAACAGGAGAGGAAAAGAAAGCGAAAGAGAA Direct Gain 0 0.939596969408727 NA NA prediction 0.879193938817453 Functional Gain - AIMP1 ENSG00000164022 CDS Human protein_coding chr4:107249366 chr4:107249366 nonsynonymous SNV 0.770 0 21 hm7G_associated_SNPs_40232 0 0 1 0 1 AIMP1 chr4:107249400 5'GT 107249400 Upstream 35bp 37025 chr11 46894661 46894661 1 + C G CESC 46894661 + 46894641 46894681 41 AGACTCCCACCTGCGGGTATCATAGTCCAGGGTAAGGCCAT AGACTCCCACCTGCGGGTATGATAGTCCAGGGTAAGGCCAT Direct Gain 0 0.939489595728014 NA NA prediction 0.878979191456029 Functional Gain - LRP4 ENSG00000134569 CDS Human antisense chr11:46894661 chr11:46894661 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40233 0 0 0 0 1 LRP4-AS1 chr11:46894625 3'AG 46894625 Downstream 37bp 37026 chr17 15604508 15604508 1 + C G rs144115902 15604508 + 15604488 15604528 41 CCATTTCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTG CCATTTCCAAGAGAAGAGCAGAGAAGAGGGAGAAGTGGCTG Direct Gain 0 0.93946078182521 NA NA prediction 0.87892156365042 Functional Gain - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15604508 chr17:15604508 nonsynonymous SNV 0.843 0 21 hm7G_associated_SNPs_40235 0 0 1 0 2 ZNF286A chr17:15604466 3'AG 15604466 Downstream 43bp 37027 chr17 15604508 15604508 1 + C G rs144115902 15604508 + 15604488 15604528 41 CCATTTCCAAGAGAAGAGCACAGAAGAGGGAGAAGTGGCTG CCATTTCCAAGAGAAGAGCAGAGAAGAGGGAGAAGTGGCTG Direct Gain 0 0.93946078182521 NA NA prediction 0.87892156365042 Functional Gain - ZNF286A ENSG00000187607;ENSG00000255104 CDS Human other chr17:15604508 chr17:15604508 nonsynonymous SNV 0.843 0 21 hm7G_associated_SNPs_40235 0 0 1 0 2 ZNF286A chr17:15604554 5'GT 15604554 Upstream 47bp 37028 chr2 95843310 95843310 1 + A G GBM 95843310 + 95843290 95843330 41 CCCCATACAGAGGGACCTCTACAAGGAGGTGATGCTGGAGA CCCCATACAGAGGGACCTCTGCAAGGAGGTGATGCTGGAGA Direct Gain 0 0.939450369506575 NA NA prediction 0.87890073901315 Functional Gain - ZNF2 ENSG00000163067 CDS Human other chr2:95843310 chr2:95843310 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40236 0 0 1 0 2 ZNF2 chr2:95843228 3'AG 95843228 Downstream 83bp 37029 chr2 95843310 95843310 1 + A G GBM 95843310 + 95843290 95843330 41 CCCCATACAGAGGGACCTCTACAAGGAGGTGATGCTGGAGA CCCCATACAGAGGGACCTCTGCAAGGAGGTGATGCTGGAGA Direct Gain 0 0.939450369506575 NA NA prediction 0.87890073901315 Functional Gain - ZNF2 ENSG00000163067 CDS Human other chr2:95843310 chr2:95843310 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40236 0 0 1 0 2 ZNF2 chr2:95843354 5'GT 95843354 Upstream 45bp 37030 chr16 56601720 56601720 1 + A G rs666636 56601720 + 56601700 56601740 41 AACCTGCAACTGTAAAACATATTGGAAGAGTGAGTATGGTG AACCTGCAACTGTAAAACATGTTGGAAGAGTGAGTATGGTG Direct Gain 0 0.939434149320066 NA NA prediction 0.878868298640133 Functional Gain - MT4 ENSG00000102891 CDS Human protein_coding chr16:56601720 chr16:56601720 nonsynonymous SNV 0.300 0 21 hm7G_associated_SNPs_40237 0 0 0 0 1 MT4 chr16:56601663 3'AG 56601663 Downstream 58bp 37031 chr12 105551056 105551056 1 + A G rs3763992 105551056 + 105551036 105551076 41 ATTGTAAATTTTGAAGAACTAGTAAAAGAAGAAGGTCTTGC ATTGTAAATTTTGAAGAACTGGTAAAAGAAGAAGGTCTTGC Direct Gain 0 0.939336057231955 NA NA prediction 0.87867211446391 Functional Gain - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105551056 chr12:105551056 synonymous SNV . 0 21 hm7G_associated_SNPs_40242 0 0 1 0 2 WASHC4 chr12:105551014 3'AG 105551014 Downstream 43bp 37032 chr12 105551056 105551056 1 + A G rs3763992 105551056 + 105551036 105551076 41 ATTGTAAATTTTGAAGAACTAGTAAAAGAAGAAGGTCTTGC ATTGTAAATTTTGAAGAACTGGTAAAAGAAGAAGGTCTTGC Direct Gain 0 0.939336057231955 NA NA prediction 0.87867211446391 Functional Gain - WASHC4 ENSG00000136051 CDS Human protein_coding chr12:105551056 chr12:105551056 synonymous SNV . 0 21 hm7G_associated_SNPs_40242 0 0 1 0 2 WASHC4 chr12:105551100 5'GT 105551100 Upstream 45bp 37033 chr12 6646380 6646380 1 + C G BLCA 6646380 + 6646360 6646400 41 GACAACAGCCTCAAGATCATCAGGTGAGGAAGGCAGGGCCC GACAACAGCCTCAAGATCATGAGGTGAGGAAGGCAGGGCCC Direct Gain 0 0.939307064862947 NA NA prediction 0.878614129725894 Functional Gain - GAPDH ENSG00000111640 CDS Human protein_coding chr12:6646380 chr12:6646380 nonsynonymous SNV 0.227 2 21 hm7G_associated_SNPs_40245 0 0 1 0 1 GAPDH chr12:6646382 5'GT 6646382 Upstream 3bp 37034 chr11 18499255 18499255 1 + C G rs138767324 18499255 + 18499235 18499275 41 CAGAAAGTATTTTGAAGAATCTTAGGAGAGTGCATCCAGTT CAGAAAGTATTTTGAAGAATGTTAGGAGAGTGCATCCAGTT Direct Gain 0 0.939297515377509 NA NA prediction 0.878595030755018 Functional Gain - LDHAL6A ENSG00000166800 CDS Human protein_coding chr11:18499255 chr11:18499255 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_40247 0 0 0 0 2 LDHAL6A chr11:18499167 3'AG 18499167 Downstream 89bp 37035 chr11 18499255 18499255 1 + C G rs138767324 18499255 + 18499235 18499275 41 CAGAAAGTATTTTGAAGAATCTTAGGAGAGTGCATCCAGTT CAGAAAGTATTTTGAAGAATGTTAGGAGAGTGCATCCAGTT Direct Gain 0 0.939297515377509 NA NA prediction 0.878595030755018 Functional Gain - LDHAL6A ENSG00000166800 CDS Human protein_coding chr11:18499255 chr11:18499255 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_40247 0 0 0 0 2 LDHAL6A chr11:18499290 5'GT 18499290 Upstream 36bp 37036 chr3 197503809 197503809 1 + C G LUSC 197503809 + 197503789 197503829 41 TGAAACTAGATGGCGGACTTCCACCACAAATGGAGGGATTT TGAAACTAGATGGCGGACTTGCACCACAAATGGAGGGATTT Direct Gain 0 0.939294140772293 NA NA prediction 0.878588281544587 Functional Gain - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197503809 chr3:197503809 nonsynonymous SNV 0.987 4 21 hm7G_associated_SNPs_40248 0 0 1 1 1 FYTTD1 chr3:197503798 3'AG 197503798 Downstream 12bp 37037 chr4 128998985 128998985 1 + A G LUAD 128998985 + 128998965 128999005 41 GAAATAAAAAGCCACAAAATAGAAAAGAAAAAGAAGAGAAG GAAATAAAAAGCCACAAAATGGAAAAGAAAAAGAAGAGAAG Direct Gain 0 0.939266722769845 NA NA prediction 0.878533445539689 Functional Gain - LARP1B ENSG00000138709 CDS Human protein_coding chr4:128998985 chr4:128998985 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_40249 0 0 1 0 1 LARP1B chr4:128998943 3'AG 128998943 Downstream 43bp 37038 chr9 96081445 96081445 1 - T C rs201220086 96081445 - 96081425 96081465 41 CTCCTTCAGATATACAATCTATTGGGGATTCCGTGCCACTG CTCCTTCAGATATACAATCTGTTGGGGATTCCGTGCCACTG Direct Gain 0 0.939264832216673 NA NA prediction 0.878529664433346 Functional Gain - C9orf129 ENSG00000204352 CDS Human protein_coding chr9:96081445 chr9:96081445 nonsynonymous SNV 0.730 0 21 hm7G_associated_SNPs_40250 0 0 0 0 2 C9orf129 chr9:96081383 5'GT 96081383 Upstream 63bp 37039 chr9 96081445 96081445 1 - T C rs201220086 96081445 - 96081425 96081465 41 CTCCTTCAGATATACAATCTATTGGGGATTCCGTGCCACTG CTCCTTCAGATATACAATCTGTTGGGGATTCCGTGCCACTG Direct Gain 0 0.939264832216673 NA NA prediction 0.878529664433346 Functional Gain - C9orf129 ENSG00000204352 CDS Human protein_coding chr9:96081445 chr9:96081445 nonsynonymous SNV 0.730 0 21 hm7G_associated_SNPs_40250 0 0 0 0 2 C9orf129 chr9:96081456 3'AG 96081456 Downstream 12bp 37040 chrX 69459644 69459644 1 + T G UCEC 69459644 + 69459624 69459664 41 GGTGTATGATCAGGTGCTGTTCCATAAGGATAGCAGGATGT GGTGTATGATCAGGTGCTGTGCCATAAGGATAGCAGGATGT Direct Gain 0 0.939263344863654 NA NA prediction 0.878526689727309 Functional Gain - AWAT1 ENSG00000204195 CDS Human protein_coding chrX:69459644 chrX:69459644 nonsynonymous SNV 0.975 4 21 hm7G_associated_SNPs_40251 0 0 0 0 1 AWAT1 chrX:69459585 3'AG 69459585 Downstream 60bp 37041 chr15 66170220 66170220 1 + C G LUSC 66170220 + 66170200 66170240 41 GCTGATAGTAACATTGTTATCATGCTTGTGGGCAATAAGAG GCTGATAGTAACATTGTTATGATGCTTGTGGGCAATAAGAG Direct Gain 0 0.939244379984297 NA NA prediction 0.878488759968594 Functional Gain - RAB11A ENSG00000103769 CDS Human protein_coding chr15:66170220 chr15:66170220 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40253 0 0 1 0 1 RAB11A chr15:66170293 5'GT 66170293 Upstream 74bp 37042 chr19 37203719 37203719 1 + T G LGG 37203719 + 37203699 37203739 41 ACCTGATGTGATCCTCAAGTTGGAACGAGGAGAAGAGCCAT ACCTGATGTGATCCTCAAGTGGGAACGAGGAGAAGAGCCAT Direct Gain 0 0.939229058700061 NA NA prediction 0.878458117400122 Functional Gain - ZNF567 ENSG00000189042 CDS Human protein_coding chr19:37203719 chr19:37203719 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_40254 0 0 1 0 1 ZNF567 chr19:37203769 5'GT 37203769 Upstream 51bp 37043 chrY 15817112 15817112 1 + A G COAD 15817112 + 15817092 15817132 41 TTTCTGGTCGCAGCTATCGAACAGGAGAGGCAAGCAGGCGA TTTCTGGTCGCAGCTATCGAGCAGGAGAGGCAAGCAGGCGA Direct Gain 0 0.939206084024779 NA NA prediction 0.878412168049558 Functional Gain - TMSB4Y ENSG00000154620 CDS Human protein_coding chrY:15817112 chrY:15817112 synonymous SNV . 0 21 hm7G_associated_SNPs_40255 0 0 0 0 1 TMSB4Y chrY:15817105 3'AG 15817105 Downstream 8bp 37044 chr17 30320311 30320311 1 + A G UCEC 30320311 + 30320291 30320331 41 AAACAAGAAAAGAAAAGGATACTCCAAATGAAAACCGACAA AAACAAGAAAAGAAAAGGATGCTCCAAATGAAAACCGACAA Direct Gain 0 0.939174084633612 NA NA prediction 0.878348169267223 Functional Gain - SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30320311 chr17:30320311 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40256 0 0 1 0 2 SUZ12 chr17:30320261 3'AG 30320261 Downstream 51bp 37045 chr17 30320311 30320311 1 + A G UCEC 30320311 + 30320291 30320331 41 AAACAAGAAAAGAAAAGGATACTCCAAATGAAAACCGACAA AAACAAGAAAAGAAAAGGATGCTCCAAATGAAAACCGACAA Direct Gain 0 0.939174084633612 NA NA prediction 0.878348169267223 Functional Gain - SUZ12 ENSG00000178691 CDS Human protein_coding chr17:30320311 chr17:30320311 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40256 0 0 1 0 2 SUZ12 chr17:30320352 5'GT 30320352 Upstream 42bp 37046 chr5 76357581 76357581 1 + A G LIHC 76357581 + 76357561 76357601 41 GTTGGAGAAGATGGGTTGGAAGAAAGGAGAGGGCCTGGGGA GTTGGAGAAGATGGGTTGGAGGAAAGGAGAGGGCCTGGGGA Direct Gain 0 0.939155242717719 NA NA prediction 0.878310485435439 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76357581 chr5:76357581 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_40258 0 0 1 0 2 AGGF1 chr5:76357528 3'AG 76357528 Downstream 54bp 37047 chr5 76357581 76357581 1 + A G LIHC 76357581 + 76357561 76357601 41 GTTGGAGAAGATGGGTTGGAAGAAAGGAGAGGGCCTGGGGA GTTGGAGAAGATGGGTTGGAGGAAAGGAGAGGGCCTGGGGA Direct Gain 0 0.939155242717719 NA NA prediction 0.878310485435439 Functional Gain - AGGF1 ENSG00000164252 CDS Human protein_coding chr5:76357581 chr5:76357581 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_40258 0 0 1 0 2 AGGF1 chr5:76357627 5'GT 76357627 Upstream 47bp 37048 chr8 86360349 86360349 1 + C G STAD 86360349 + 86360329 86360369 41 TGGCGACCTCCACAGCCTATCAATAACAGGGTGGTGAGAGC TGGCGACCTCCACAGCCTATGAATAACAGGGTGGTGAGAGC Direct Gain 0 0.93913147931252 NA NA prediction 0.87826295862504 Functional Gain - CA3 ENSG00000164879 CDS Human protein_coding chr8:86360349 chr8:86360349 nonsynonymous SNV 0.937 1 21 hm7G_associated_SNPs_40259 0 0 0 3 1 CA3 chr8:86360263 3'AG 86360263 Downstream 87bp 37049 chr14 23237355 23237355 1 + A G rs559762861 23237355 + 23237335 23237375 41 ATGCATGTTGATCTGGGCCTACCTTGGTGGGGGGCCATTGC ATGCATGTTGATCTGGGCCTGCCTTGGTGGGGGGCCATTGC Direct Gain 0 0.939125727915471 NA NA prediction 0.878251455830942 Functional Gain - OXA1L ENSG00000155463 CDS Human protein_coding chr14:23237355 chr14:23237355 synonymous SNV . 0 21 hm7G_associated_SNPs_40260 0 0 1 0 1 OXA1L chr14:23237380 5'GT 23237380 Upstream 26bp 37050 chr20 6758908 6758908 1 + A G UCEC 6758908 + 6758888 6758928 41 TTAGAATCTTTGGAAGAACTACCAGAAACGAGTGGGAAAAC TTAGAATCTTTGGAAGAACTGCCAGAAACGAGTGGGAAAAC Direct Gain 0 0.939069573949902 NA NA prediction 0.878139147899804 Functional Gain - BMP2 ENSG00000125845 CDS Human protein_coding chr20:6758908 chr20:6758908 synonymous SNV . 0 21 hm7G_associated_SNPs_40262 0 0 0 0 1 BMP2 chr20:6758892 3'AG 6758892 Downstream 17bp 37051 chr20 62871771 62871771 1 + C G SKCM 62871771 + 62871751 62871791 41 AAGGACCTCCTGGAGAGCATCAAGCAGGCTGTGAGGGGCAT AAGGACCTCCTGGAGAGCATGAAGCAGGCTGTGAGGGGCAT Direct Gain 0 0.939043091291455 NA NA prediction 0.878086182582909 Functional Gain - MYT1 ENSG00000196132 CDS Human protein_coding chr20:62871771 chr20:62871771 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40263 0 0 0 0 1 MYT1 chr20:62871673 3'AG 62871673 Downstream 99bp 37052 chr19 56273357 56273357 1 + A G rs202102526 56273357 + 56273337 56273377 41 GAAGGATGACATCAAGCCCAAGTACAAGCTGAGGGCGCTGG GAAGGATGACATCAAGCCCAGGTACAAGCTGAGGGCGCTGG Direct Gain 0 0.93898866648651 NA NA prediction 0.87797733297302 Functional Gain - RFPL4A ENSG00000223638 CDS Human protein_coding chr19:56273357 chr19:56273357 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_40264 0 0 0 0 1 RFPL4A chr19:56273452 5'GT 56273452 Upstream 96bp 37053 chr20 10541397 10541397 1 + A G UCEC 10541397 + 10541377 10541417 41 TGATTCAAGAGTTCAGGAGTACTTGGAAGTTCGCAAACAGC TGATTCAAGAGTTCAGGAGTGCTTGGAAGTTCGCAAACAGC Direct Gain 0 0.938954542979031 NA NA prediction 0.877909085958062 Functional Gain - SLX4IP ENSG00000149346 CDS Human protein_coding chr20:10541397 chr20:10541397 nonsynonymous SNV 0.949 2 21 hm7G_associated_SNPs_40265 0 0 1 0 2 SLX4IP chr20:10541348 3'AG 10541348 Downstream 50bp 37054 chr20 10541397 10541397 1 + A G UCEC 10541397 + 10541377 10541417 41 TGATTCAAGAGTTCAGGAGTACTTGGAAGTTCGCAAACAGC TGATTCAAGAGTTCAGGAGTGCTTGGAAGTTCGCAAACAGC Direct Gain 0 0.938954542979031 NA NA prediction 0.877909085958062 Functional Gain - SLX4IP ENSG00000149346 CDS Human protein_coding chr20:10541397 chr20:10541397 nonsynonymous SNV 0.949 2 21 hm7G_associated_SNPs_40265 0 0 1 0 2 SLX4IP chr20:10541468 5'GT 10541468 Upstream 72bp 37055 chr1 38484144 38484144 1 + A G UCEC 38484144 + 38484124 38484164 41 TTTGGATTTTAGGATGGAGTACATATTATTAAGGAGACTAA TTTGGATTTTAGGATGGAGTGCATATTATTAAGGAGACTAA Direct Gain 0 0.938951541032571 NA NA prediction 0.877903082065143 Functional Gain - UTP11 ENSG00000183520 CDS Human protein_coding chr1:38484144 chr1:38484144 synonymous SNV . 0 21 hm7G_associated_SNPs_40266 0 0 1 0 1 UTP11 chr1:38484136 3'AG 38484136 Downstream 9bp 37056 chr5 94024275 94024275 1 + C G LUSC 94024275 + 94024255 94024295 41 GTCTGGAAAGATTCAGGTGTCAAAGAAAATAGGACAGCGGC GTCTGGAAAGATTCAGGTGTGAAAGAAAATAGGACAGCGGC Direct Gain 0 0.938939914198263 NA NA prediction 0.877879828396527 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94024275 chr5:94024275 stopgain 0.648 0 21 hm7G_associated_SNPs_40267 0 0 1 0 2 SLF1 chr5:94024211 3'AG 94024211 Downstream 65bp 37057 chr5 94024275 94024275 1 + C G LUSC 94024275 + 94024255 94024295 41 GTCTGGAAAGATTCAGGTGTCAAAGAAAATAGGACAGCGGC GTCTGGAAAGATTCAGGTGTGAAAGAAAATAGGACAGCGGC Direct Gain 0 0.938939914198263 NA NA prediction 0.877879828396527 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94024275 chr5:94024275 stopgain 0.648 0 21 hm7G_associated_SNPs_40267 0 0 1 0 2 SLF1 chr5:94024374 5'GT 94024374 Upstream 100bp 37058 chr17 43163902 43163902 1 + C G HNSC 43163902 + 43163882 43163922 41 TCTTTGCCAGCAGAGAGGATCCAGGAAATACAGAAGGCCAT TCTTTGCCAGCAGAGAGGATGCAGGAAATACAGAAGGCCAT Direct Gain 0 0.938920994618867 NA NA prediction 0.877841989237734 Functional Gain - NMT1 ENSG00000136448 CDS Human protein_coding chr17:43163902 chr17:43163902 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40268 0 0 1 0 1 NMT1 chr17:43163876 3'AG 43163876 Downstream 27bp 37059 chr5 157178476 157178476 1 + T G PAAD 157178476 + 157178456 157178496 41 GAATGTTCACATCCGCACTTTCAAGGGACTTCGGGGCGTCT GAATGTTCACATCCGCACTTGCAAGGGACTTCGGGGCGTCT Direct Gain 0 0.938887879420464 NA NA prediction 0.877775758840928 Functional Gain - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178476 chr5:157178476 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40272 0 0 1 0 2 LSM11 chr5:157178398 3'AG 157178398 Downstream 79bp 37060 chr5 157178476 157178476 1 + T G PAAD 157178476 + 157178456 157178496 41 GAATGTTCACATCCGCACTTTCAAGGGACTTCGGGGCGTCT GAATGTTCACATCCGCACTTGCAAGGGACTTCGGGGCGTCT Direct Gain 0 0.938887879420464 NA NA prediction 0.877775758840928 Functional Gain - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157178476 chr5:157178476 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40272 0 0 1 0 2 LSM11 chr5:157178537 5'GT 157178537 Upstream 62bp 37061 chr8 82667687 82667687 1 + C G BLCA 82667687 + 82667667 82667707 41 AAATCTCAGAAGCATTTTCTCAACGGGTTGGCTTTGGTGAT AAATCTCAGAAGCATTTTCTGAACGGGTTGGCTTTGGTGAT Direct Gain 0 0.938872249733782 NA NA prediction 0.877744499467565 Functional Gain - CHMP4C ENSG00000164695 CDS Human protein_coding chr8:82667687 chr8:82667687 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40274 0 0 1 0 2 CHMP4C chr8:82667605 3'AG 82667605 Downstream 83bp 37062 chr8 82667687 82667687 1 + C G BLCA 82667687 + 82667667 82667707 41 AAATCTCAGAAGCATTTTCTCAACGGGTTGGCTTTGGTGAT AAATCTCAGAAGCATTTTCTGAACGGGTTGGCTTTGGTGAT Direct Gain 0 0.938872249733782 NA NA prediction 0.877744499467565 Functional Gain - CHMP4C ENSG00000164695 CDS Human protein_coding chr8:82667687 chr8:82667687 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40274 0 0 1 0 2 CHMP4C chr8:82667719 5'GT 82667719 Upstream 33bp 37063 chr20 33862090 33862090 1 + A G UCEC 33862090 + 33862070 33862110 41 TGCAGATTACACCTATTTCTACAAGGGCCGGGACTACTGGA TGCAGATTACACCTATTTCTGCAAGGGCCGGGACTACTGGA Direct Gain 0 0.938852681391305 NA NA prediction 0.877705362782609 Functional Gain - MMP24 ENSG00000125966 CDS Human protein_coding chr20:33862090 chr20:33862090 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40275 0 0 0 0 1 MMP24 chr20:33862075 3'AG 33862075 Downstream 16bp 37064 chr7 99913430 99913430 1 + C G CESC 99913430 + 99913410 99913450 41 GATCCTGTCATTAAAAGATTCCTGGCCTGGGACAAAGATCT GATCCTGTCATTAAAAGATTGCTGGCCTGGGACAAAGATCT Direct Gain 0 0.938838054096682 NA NA prediction 0.877676108193364 Functional Gain - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99913430 chr7:99913430 nonsynonymous SNV 0.551 2 21 hm7G_associated_SNPs_40277 0 0 0 0 2 SPDYE3 chr7:99913408 3'AG 99913408 Downstream 23bp 37065 chr7 99913430 99913430 1 + C G CESC 99913430 + 99913410 99913450 41 GATCCTGTCATTAAAAGATTCCTGGCCTGGGACAAAGATCT GATCCTGTCATTAAAAGATTGCTGGCCTGGGACAAAGATCT Direct Gain 0 0.938838054096682 NA NA prediction 0.877676108193364 Functional Gain - SPDYE3 ENSG00000214300 CDS Human protein_coding chr7:99913430 chr7:99913430 nonsynonymous SNV 0.551 2 21 hm7G_associated_SNPs_40277 0 0 0 0 2 SPDYE3 chr7:99913466 5'GT 99913466 Upstream 37bp 37066 chr8 142441045 142441045 1 + C G LUAD 142441045 + 142441025 142441065 41 AGGAAGCGCCGCGGAGCCATCAACAGCAAGCAGCTCACCTA AGGAAGCGCCGCGGAGCCATGAACAGCAAGCAGCTCACCTA Direct Gain 0 0.938808765803308 NA NA prediction 0.877617531606616 Functional Gain - PTP4A3 ENSG00000184489 CDS Human protein_coding chr8:142441045 chr8:142441045 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_40279 0 0 1 0 1 PTP4A3 chr8:142441027 3'AG 142441027 Downstream 19bp 37067 chr19 5664425 5664425 1 + C G HNSC 5664425 + 5664405 5664445 41 CAGGAGAGAAGGTTCAAGGTCAATGATGGGAGAACGAGAAG CAGGAGAGAAGGTTCAAGGTGAATGATGGGAGAACGAGAAG Direct Gain 0 0.938801863783009 NA NA prediction 0.877603727566018 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5664425 chr19:5664425 stopgain 0.995 0 21 hm7G_associated_SNPs_40282 0 0 1 0 2 SAFB chr19:5664408 3'AG 5664408 Downstream 18bp 37068 chr19 5664425 5664425 1 + C G HNSC 5664425 + 5664405 5664445 41 CAGGAGAGAAGGTTCAAGGTCAATGATGGGAGAACGAGAAG CAGGAGAGAAGGTTCAAGGTGAATGATGGGAGAACGAGAAG Direct Gain 0 0.938801863783009 NA NA prediction 0.877603727566018 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5664425 chr19:5664425 stopgain 0.995 0 21 hm7G_associated_SNPs_40282 0 0 1 0 2 SAFB chr19:5664450 5'GT 5664450 Upstream 26bp 37069 chr16 4674988 4674988 1 + C G BLCA 4674988 + 4674968 4675008 41 TCCATTCTCAGCCGCCGCATCGCGGGGGTGGAGGACATCGA TCCATTCTCAGCCGCCGCATGGCGGGGGTGGAGGACATCGA Direct Gain 0 0.938799950197331 NA NA prediction 0.877599900394661 Functional Gain - MGRN1 ENSG00000102858 CDS Human protein_coding chr16:4674988 chr16:4674988 nonsynonymous SNV 0.979 3 21 hm7G_associated_SNPs_40283 0 0 1 0 1 MGRN1 chr16:4675049 5'GT 4675049 Upstream 62bp 37070 chr17 79991599 79991599 1 + C G HNSC 79991599 + 79991579 79991619 41 TGTGAAATACCTGGAGTGCTCAGCCCTGACCCAGCGGGGCC TGTGAAATACCTGGAGTGCTGAGCCCTGACCCAGCGGGGCC Direct Gain 0 0.938783996913808 NA NA prediction 0.877567993827616 Functional Gain - RAC3 ENSG00000169750 CDS Human protein_coding chr17:79991599 chr17:79991599 stopgain 0.996 1 21 hm7G_associated_SNPs_40284 0 0 1 0 1 RAC3 chr17:79991575 3'AG 79991575 Downstream 25bp 37071 chr2 152220459 152220459 1 + C G UCEC 152220459 + 152220439 152220479 41 CATCATCTGATTTTGCAGAACGAGCAGCCGGTGTGTACCAC CATCATCTGATTTTGCAGAAGGAGCAGCCGGTGTGTACCAC Direct Gain 0 0.938748453832617 NA NA prediction 0.877496907665233 Functional Gain - TNFAIP6 ENSG00000123610 CDS Human protein_coding chr2:152220459 chr2:152220459 nonsynonymous SNV 0.979 2 21 hm7G_associated_SNPs_40286 0 0 0 0 1 TNFAIP6 chr2:152220457 3'AG 152220457 Downstream 3bp 37072 chr14 35497339 35497339 1 + T G LUAD 35497339 + 35497319 35497359 41 CCAGTCACAGATGGCAAAATTGAACCAACAAATGGCCAAAA CCAGTCACAGATGGCAAAATGGAACCAACAAATGGCCAAAA Direct Gain 0 0.938746195183755 NA NA prediction 0.877492390367509 Functional Gain - SRP54 ENSG00000100883 CDS Human protein_coding chr14:35497339 chr14:35497339 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_40287 0 0 1 0 2 SRP54 chr14:35497294 3'AG 35497294 Downstream 46bp 37073 chr14 35497339 35497339 1 + T G LUAD 35497339 + 35497319 35497359 41 CCAGTCACAGATGGCAAAATTGAACCAACAAATGGCCAAAA CCAGTCACAGATGGCAAAATGGAACCAACAAATGGCCAAAA Direct Gain 0 0.938746195183755 NA NA prediction 0.877492390367509 Functional Gain - SRP54 ENSG00000100883 CDS Human protein_coding chr14:35497339 chr14:35497339 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_40287 0 0 1 0 2 SRP54 chr14:35497389 5'GT 35497389 Upstream 51bp 37074 chr7 5942310 5942310 1 + C G BLCA 5942310 + 5942290 5942330 41 AGCTTTTTAATGGTACATTTCTGAAAGCCATGGAAGACGGA AGCTTTTTAATGGTACATTTGTGAAAGCCATGGAAGACGGA Direct Gain 0 0.93873702313136 NA NA prediction 0.877474046262719 Functional Gain - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5942310 chr7:5942310 nonsynonymous SNV 0.979 0 21 hm7G_associated_SNPs_40288 0 0 0 0 2 CCZ1 chr7:5942292 3'AG 5942292 Downstream 19bp 37075 chr7 5942310 5942310 1 + C G BLCA 5942310 + 5942290 5942330 41 AGCTTTTTAATGGTACATTTCTGAAAGCCATGGAAGACGGA AGCTTTTTAATGGTACATTTGTGAAAGCCATGGAAGACGGA Direct Gain 0 0.93873702313136 NA NA prediction 0.877474046262719 Functional Gain - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5942310 chr7:5942310 nonsynonymous SNV 0.979 0 21 hm7G_associated_SNPs_40288 0 0 0 0 2 CCZ1 chr7:5942375 5'GT 5942375 Upstream 66bp 37076 chr19 21688570 21688570 1 + A G rs191177521 21688570 + 21688550 21688590 41 CCAGGACCCCCTGGAAGCCTAGAAATGGTGAGAGTGCCGAG CCAGGACCCCCTGGAAGCCTGGAAATGGTGAGAGTGCCGAG Direct Gain 0 0.93872272117234 NA NA prediction 0.877445442344681 Functional Gain - ZNF429 ENSG00000197013 UTR5 Human protein_coding chr19:21688570 chr19:21688570 . . 0 21 hm7G_associated_SNPs_40291 0 0 0 0 1 ZNF429 chr19:21688576 5'GT 21688576 Upstream 7bp 37077 chr17 18692746 18692746 1 + C G UCS 18692746 + 18692726 18692766 41 AGACCAAGAAAAGCCAAAATCAGGTAGGAGGAGAGAAGTTG AGACCAAGAAAAGCCAAAATGAGGTAGGAGGAGAGAAGTTG Direct Gain 0 0.938716087113635 NA NA prediction 0.877432174227269 Functional Gain - TVP23B ENSG00000171928 CDS Human protein_coding chr17:18692746 chr17:18692746 nonsynonymous SNV 0.967 2 21 hm7G_associated_SNPs_40293 0 0 0 0 2 TVP23B chr17:18692666 3'AG 18692666 Downstream 81bp 37078 chr17 18692746 18692746 1 + C G UCS 18692746 + 18692726 18692766 41 AGACCAAGAAAAGCCAAAATCAGGTAGGAGGAGAGAAGTTG AGACCAAGAAAAGCCAAAATGAGGTAGGAGGAGAGAAGTTG Direct Gain 0 0.938716087113635 NA NA prediction 0.877432174227269 Functional Gain - TVP23B ENSG00000171928 CDS Human protein_coding chr17:18692746 chr17:18692746 nonsynonymous SNV 0.967 2 21 hm7G_associated_SNPs_40293 0 0 0 0 2 TVP23B chr17:18692748 5'GT 18692748 Upstream 3bp 37079 chrX 100087867 100087867 1 + A G UCEC 100087867 + 100087847 100087887 41 GAACCAAGAGGACCCATGCTAGATCAGAGGGGTCCACCCTT GAACCAAGAGGACCCATGCTGGATCAGAGGGGTCCACCCTT Direct Gain 0 0.938693380180916 NA NA prediction 0.877386760361831 Functional Gain - CSTF2 ENSG00000101811 CDS Human protein_coding chrX:100087867 chrX:100087867 synonymous SNV . 0 21 hm7G_associated_SNPs_40294 0 0 0 0 1 CSTF2 chrX:100087898 5'GT 100087898 Upstream 32bp 37080 chrX 79282782 79282782 1 + C G LUSC 79282782 + 79282762 79282802 41 AACTAAAAATAGAAAGAAATCCTTTTGCTAAAGGATTTAGA AACTAAAAATAGAAAGAAATGCTTTTGCTAAAGGATTTAGA Direct Gain 0 0.93867997237396 NA NA prediction 0.877359944747919 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79282782 chrX:79282782 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40295 0 0 0 0 2 TBX22 chrX:79282755 3'AG 79282755 Downstream 28bp 37081 chrX 79282782 79282782 1 + C G LUSC 79282782 + 79282762 79282802 41 AACTAAAAATAGAAAGAAATCCTTTTGCTAAAGGATTTAGA AACTAAAAATAGAAAGAAATGCTTTTGCTAAAGGATTTAGA Direct Gain 0 0.93867997237396 NA NA prediction 0.877359944747919 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79282782 chrX:79282782 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40295 0 0 0 0 2 TBX22 chrX:79282819 5'GT 79282819 Upstream 38bp 37082 chr12 57167691 57167691 1 + C G rs146006697 57167691 + 57167671 57167711 41 ACTACCTTCTGCACTGGTACCGGGAGAGGCAGGTGGTGAGC ACTACCTTCTGCACTGGTACGGGGAGAGGCAGGTGGTGAGC Direct Gain 0 0.938664033877853 NA NA prediction 0.877328067755706 Functional Gain - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57167691 chr12:57167691 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_40296 0 0 0 0 1 HSD17B6 chr12:57167618 3'AG 57167618 Downstream 74bp 37083 chr15 76209576 76209576 1 + C G CESC 76209576 + 76209556 76209596 41 TAACTTTTTCTCTAGTGACTCCAATGGGATCAGGTAGCAAT TAACTTTTTCTCTAGTGACTGCAATGGGATCAGGTAGCAAT Direct Gain 0 0.938657081816163 NA NA prediction 0.877314163632325 Functional Gain - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76209576 chr15:76209576 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40297 0 0 1 0 1 FBXO22 chr15:76209571 3'AG 76209571 Downstream 6bp 37084 chr14 93275649 93275649 1 + A G ESCA 93275649 + 93275629 93275669 41 TTAAATTTTTTAATAGAATTAAACAAAGCAAGAGCAAGAGT TTAAATTTTTTAATAGAATTGAACAAAGCAAGAGCAAGAGT Direct Gain 0 0.938642886152916 NA NA prediction 0.877285772305831 Functional Gain - GOLGA5 ENSG00000066455 CDS Human protein_coding chr14:93275649 chr14:93275649 synonymous SNV . 0 21 hm7G_associated_SNPs_40298 0 0 1 0 1 GOLGA5 chr14:93275645 3'AG 93275645 Downstream 5bp 37085 chr6 122733900 122733900 1 + T G STAD 122733900 + 122733880 122733920 41 GATGACTTGTTGGAGAACATTAAAAGGAAGGTGAGCTATTG GATGACTTGTTGGAGAACATGAAAAGGAAGGTGAGCTATTG Direct Gain 0 0.938610474553151 NA NA prediction 0.877220949106302 Functional Gain - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122733900 chr6:122733900 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40300 0 0 0 0 1 HSF2 chr6:122733909 5'GT 122733909 Upstream 10bp 37086 chrX 153993196 153993196 1 + T G BRCA 153993196 + 153993176 153993216 41 ATTATTTTGCCAAAGAAACATAAGAAGAAAAAGGAGCGGAA ATTATTTTGCCAAAGAAACAGAAGAAGAAAAAGGAGCGGAA Direct Gain 0 0.938609231966321 NA NA prediction 0.877218463932642 Functional Gain - DKC1 ENSG00000130826 CDS Human protein_coding chrX:153993196 chrX:153993196 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40301 0 0 1 0 2 DKC1 chrX:153993174 3'AG 153993174 Downstream 23bp 37087 chrX 153993196 153993196 1 + T G BRCA 153993196 + 153993176 153993216 41 ATTATTTTGCCAAAGAAACATAAGAAGAAAAAGGAGCGGAA ATTATTTTGCCAAAGAAACAGAAGAAGAAAAAGGAGCGGAA Direct Gain 0 0.938609231966321 NA NA prediction 0.877218463932642 Functional Gain - DKC1 ENSG00000130826 CDS Human protein_coding chrX:153993196 chrX:153993196 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40301 0 0 1 0 2 DKC1 chrX:153993241 5'GT 153993241 Upstream 46bp 37088 chr12 123466295 123466295 1 + A G LIHC 123466295 + 123466275 123466315 41 GTACAAGGACAAGAGGAGGAAGAAGAAGAAGAAGAGGAAGA GTACAAGGACAAGAGGAGGAGGAAGAAGAAGAAGAGGAAGA Direct Gain 0 0.938588352872479 NA NA prediction 0.877176705744958 Functional Gain - ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123466295 chr12:123466295 nonsynonymous SNV 0.867 0 21 hm7G_associated_SNPs_40302 0 0 1 0 2 ARL6IP4 chr12:123466203 3'AG 123466203 Downstream 93bp 37089 chr12 123466295 123466295 1 + A G LIHC 123466295 + 123466275 123466315 41 GTACAAGGACAAGAGGAGGAAGAAGAAGAAGAAGAGGAAGA GTACAAGGACAAGAGGAGGAGGAAGAAGAAGAAGAGGAAGA Direct Gain 0 0.938588352872479 NA NA prediction 0.877176705744958 Functional Gain - ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123466295 chr12:123466295 nonsynonymous SNV 0.867 0 21 hm7G_associated_SNPs_40302 0 0 1 0 2 ARL6IP4 chr12:123466356 5'GT 123466356 Upstream 62bp 37090 chr12 109286760 109286760 1 + T G UCEC 109286760 + 109286740 109286780 41 TGTGTTTGATCATCCCAGGTTAACTGAGAGGGGAGTGAAGT TGTGTTTGATCATCCCAGGTGAACTGAGAGGGGAGTGAAGT Direct Gain 0 0.938578781425937 NA NA prediction 0.877157562851874 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109286760 chr12:109286760 stopgain 0.850 1 21 hm7G_associated_SNPs_40303 0 0 0 0 2 DAO chr12:109286758 3'AG 109286758 Downstream 3bp 37091 chr12 109286760 109286760 1 + T G UCEC 109286760 + 109286740 109286780 41 TGTGTTTGATCATCCCAGGTTAACTGAGAGGGGAGTGAAGT TGTGTTTGATCATCCCAGGTGAACTGAGAGGGGAGTGAAGT Direct Gain 0 0.938578781425937 NA NA prediction 0.877157562851874 Functional Gain - DAO ENSG00000110887 CDS Human protein_coding chr12:109286760 chr12:109286760 stopgain 0.850 1 21 hm7G_associated_SNPs_40303 0 0 0 0 2 DAO chr12:109286812 5'GT 109286812 Upstream 53bp 37092 chr5 139742074 139742074 1 + A G UCEC 139742074 + 139742054 139742094 41 CTGTATGCTGGGAAAGGGCTACCATGAGATGGGACGGGCAG CTGTATGCTGGGAAAGGGCTGCCATGAGATGGGACGGGCAG Direct Gain 0 0.938570222864562 NA NA prediction 0.877140445729125 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139742074 chr5:139742074 nonsynonymous SNV 0.978 5 21 hm7G_associated_SNPs_40304 0 0 0 0 2 SLC4A9 chr5:139742030 3'AG 139742030 Downstream 45bp 37093 chr5 139742074 139742074 1 + A G UCEC 139742074 + 139742054 139742094 41 CTGTATGCTGGGAAAGGGCTACCATGAGATGGGACGGGCAG CTGTATGCTGGGAAAGGGCTGCCATGAGATGGGACGGGCAG Direct Gain 0 0.938570222864562 NA NA prediction 0.877140445729125 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139742074 chr5:139742074 nonsynonymous SNV 0.978 5 21 hm7G_associated_SNPs_40304 0 0 0 0 2 SLC4A9 chr5:139742117 5'GT 139742117 Upstream 44bp 37094 chr16 23390046 23390046 1 + T G HNSC 23390046 + 23390026 23390066 41 GGACTGGATTTTCCACGTCTTGTCTCAGGAGCGGGACCAAA GGACTGGATTTTCCACGTCTGGTCTCAGGAGCGGGACCAAA Direct Gain 0 0.938523886444487 NA NA prediction 0.877047772888975 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23390046 chr16:23390046 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_40305 0 0 0 0 2 SCNN1B chr16:23390027 3'AG 23390027 Downstream 20bp 37095 chr16 23390046 23390046 1 + T G HNSC 23390046 + 23390026 23390066 41 GGACTGGATTTTCCACGTCTTGTCTCAGGAGCGGGACCAAA GGACTGGATTTTCCACGTCTGGTCTCAGGAGCGGGACCAAA Direct Gain 0 0.938523886444487 NA NA prediction 0.877047772888975 Functional Gain - SCNN1B ENSG00000168447 CDS Human protein_coding chr16:23390046 chr16:23390046 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_40305 0 0 0 0 2 SCNN1B chr16:23390088 5'GT 23390088 Upstream 43bp 37096 chr8 19684046 19684046 1 + A G STAD 19684046 + 19684026 19684066 41 ATCCATAAAAAGAGGAAACTAGCTGAAGGAAGAGAAAAAAC ATCCATAAAAAGAGGAAACTGGCTGAAGGAAGAGAAAAAAC Direct Gain 0 0.938520826760118 NA NA prediction 0.877041653520237 Functional Gain - INTS10 ENSG00000104613 CDS Human protein_coding chr8:19684046 chr8:19684046 synonymous SNV . 0 21 hm7G_associated_SNPs_40306 0 0 1 0 1 INTS10 chr8:19684070 5'GT 19684070 Upstream 25bp 37097 chr2 170666799 170666799 1 + C G CESC 170666799 + 170666779 170666819 41 GTATATTTTTATAGAAATCTCTAGAAGAAAAGATTGGATGC GTATATTTTTATAGAAATCTGTAGAAGAAAAGATTGGATGC Direct Gain 0 0.938488762757369 NA NA prediction 0.876977525514738 Functional Gain - SSB ENSG00000138385 CDS Human protein_coding chr2:170666799 chr2:170666799 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40308 0 0 1 0 1 SSB chr2:170666793 3'AG 170666793 Downstream 7bp 37098 chr3 52448023 52448023 1 + A G LIHC 52448023 + 52448003 52448043 41 CTTGTATAGAAAATCTGCCAAGACTAGGAGGGTAACCCAGA CTTGTATAGAAAATCTGCCAGGACTAGGAGGGTAACCCAGA Direct Gain 0 0.938483327462093 NA NA prediction 0.876966654924185 Functional Gain - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52448023 chr3:52448023 nonsynonymous SNV 0.861 1 21 hm7G_associated_SNPs_40309 0 0 1 0 2 PHF7 chr3:52448012 3'AG 52448012 Downstream 12bp 37099 chr3 52448023 52448023 1 + A G LIHC 52448023 + 52448003 52448043 41 CTTGTATAGAAAATCTGCCAAGACTAGGAGGGTAACCCAGA CTTGTATAGAAAATCTGCCAGGACTAGGAGGGTAACCCAGA Direct Gain 0 0.938483327462093 NA NA prediction 0.876966654924185 Functional Gain - PHF7 ENSG00000010318 CDS Human protein_coding chr3:52448023 chr3:52448023 nonsynonymous SNV 0.861 1 21 hm7G_associated_SNPs_40309 0 0 1 0 2 PHF7 chr3:52448064 5'GT 52448064 Upstream 42bp 37100 chr11 85961365 85961365 1 + A G LUAD 85961365 + 85961345 85961385 41 CTGTCAGTATAGAAAGTGGTACAAACACTGAACGCCCTGAT CTGTCAGTATAGAAAGTGGTGCAAACACTGAACGCCCTGAT Direct Gain 0 0.938477666871664 NA NA prediction 0.876955333743327 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85961365 chr11:85961365 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_40310 0 0 1 0 1 EED chr11:85961338 3'AG 85961338 Downstream 28bp 37101 chr2 101620666 101620666 1 + T G UCEC 101620666 + 101620646 101620686 41 CACTCAAAGAGATTCGGAAATTTGCCATGAAGGAGATGGGA CACTCAAAGAGATTCGGAAAGTTGCCATGAAGGAGATGGGA Direct Gain 0 0.938472583378096 NA NA prediction 0.876945166756193 Functional Gain - RPL31 ENSG00000071082 CDS Human protein_coding chr2:101620666 chr2:101620666 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40311 0 0 1 0 2 RPL31 chr2:101620620 3'AG 101620620 Downstream 47bp 37102 chr2 101620666 101620666 1 + T G UCEC 101620666 + 101620646 101620686 41 CACTCAAAGAGATTCGGAAATTTGCCATGAAGGAGATGGGA CACTCAAAGAGATTCGGAAAGTTGCCATGAAGGAGATGGGA Direct Gain 0 0.938472583378096 NA NA prediction 0.876945166756193 Functional Gain - RPL31 ENSG00000071082 CDS Human protein_coding chr2:101620666 chr2:101620666 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40311 0 0 1 0 2 RPL31 chr2:101620745 5'GT 101620745 Upstream 80bp 37103 chr19 41242989 41242989 1 + C G LUSC 41242989 + 41242969 41243009 41 GTGGATGGAGACCACGTCATCCTGGTGAGTGGGACACCCAT GTGGATGGAGACCACGTCATGCTGGTGAGTGGGACACCCAT Direct Gain 0 0.938459929434291 NA NA prediction 0.876919858868582 Functional Gain - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41242989 chr19:41242989 nonsynonymous SNV 0.163 3 21 hm7G_associated_SNPs_40312 0 0 1 0 2 ITPKC chr19:41242891 3'AG 41242891 Downstream 99bp 37104 chr19 41242989 41242989 1 + C G LUSC 41242989 + 41242969 41243009 41 GTGGATGGAGACCACGTCATCCTGGTGAGTGGGACACCCAT GTGGATGGAGACCACGTCATGCTGGTGAGTGGGACACCCAT Direct Gain 0 0.938459929434291 NA NA prediction 0.876919858868582 Functional Gain - ITPKC ENSG00000086544 CDS Human protein_coding chr19:41242989 chr19:41242989 nonsynonymous SNV 0.163 3 21 hm7G_associated_SNPs_40312 0 0 1 0 2 ITPKC chr19:41242992 5'GT 41242992 Upstream 4bp 37105 chr20 31656644 31656644 1 + A G STAD 31656644 + 31656624 31656664 41 CCCCTGCACCAGCAACTCCTACTGTTCCTGCGGGTGAGGGA CCCCTGCACCAGCAACTCCTGCTGTTCCTGCGGGTGAGGGA Direct Gain 0 0.93845900835678 NA NA prediction 0.87691801671356 Functional Gain - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31656644 chr20:31656644 synonymous SNV . 0 21 hm7G_associated_SNPs_40313 0 0 0 0 1 BPIFB3 chr20:31656609 3'AG 31656609 Downstream 36bp 37106 chr22 30163518 30163518 1 + A G LGG 30163518 + 30163498 30163538 41 TCAAGGCGCGGACGCTATCTACGACCACATCAACGAGGGGG TCAAGGCGCGGACGCTATCTGCGACCACATCAACGAGGGGG Direct Gain 0 0.938446159876533 NA NA prediction 0.876892319753066 Functional Gain - UQCR10 ENSG00000184076 CDS Human protein_coding chr22:30163518 chr22:30163518 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40314 0 0 1 0 2 UQCR10 chr22:30163537 5'GT 30163537 Upstream 20bp 37107 chr22 30163518 30163518 1 + A G LGG 30163518 + 30163498 30163538 41 TCAAGGCGCGGACGCTATCTACGACCACATCAACGAGGGGG TCAAGGCGCGGACGCTATCTGCGACCACATCAACGAGGGGG Direct Gain 0 0.938446159876533 NA NA prediction 0.876892319753066 Functional Gain - UQCR10 ENSG00000184076 CDS Human protein_coding chr22:30163518 chr22:30163518 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40314 0 0 1 0 2 UQCR10 chr22:30163596 5'GT 30163596 Upstream 79bp 37108 chr16 56703807 56703807 1 + A G rs112710021 56703807 + 56703787 56703827 41 TCGGCTTGCAATGGACCCCAACTGCTCCTGCGAGGCTGGTA TCGGCTTGCAATGGACCCCAGCTGCTCCTGCGAGGCTGGTA Direct Gain 0 0.938428982217034 NA NA prediction 0.876857964434068 Functional Gain - MT1H ENSG00000205358 CDS Human protein_coding chr16:56703807 chr16:56703807 nonsynonymous SNV 0.985 0 21 hm7G_associated_SNPs_40315 0 0 0 0 1 MT1H chr16:56703824 5'GT 56703824 Upstream 18bp 37109 chr17 4717994 4717994 1 + C G UCEC 4717994 + 4717974 4718014 41 TGGAGACTGGACATTATGCTCAAGAGGAAGGCGGTGAGGAG TGGAGACTGGACATTATGCTGAAGAGGAAGGCGGTGAGGAG Direct Gain 0 0.938412351395079 NA NA prediction 0.876824702790158 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4717994 chr17:4717994 synonymous SNV . 0 21 hm7G_associated_SNPs_40316 0 0 1 0 2 PLD2 chr17:4717928 3'AG 4717928 Downstream 67bp 37110 chr17 4717994 4717994 1 + C G UCEC 4717994 + 4717974 4718014 41 TGGAGACTGGACATTATGCTCAAGAGGAAGGCGGTGAGGAG TGGAGACTGGACATTATGCTGAAGAGGAAGGCGGTGAGGAG Direct Gain 0 0.938412351395079 NA NA prediction 0.876824702790158 Functional Gain - PLD2 ENSG00000129219 CDS Human protein_coding chr17:4717994 chr17:4717994 synonymous SNV . 0 21 hm7G_associated_SNPs_40316 0 0 1 0 2 PLD2 chr17:4718006 5'GT 4718006 Upstream 13bp 37111 chr1 209953941 209953941 1 + A G UCEC 209953941 + 209953921 209953961 41 GACTTTGCAGCTCCAGGCCAAGGAAAAGGAGGTGAGAGGGT GACTTTGCAGCTCCAGGCCAGGGAAAAGGAGGTGAGAGGGT Direct Gain 0 0.938374572948071 NA NA prediction 0.876749145896142 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209953941 chr1:209953941 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40319 0 0 0 0 1 TRAF3IP3 chr1:209953951 5'GT 209953951 Upstream 11bp 37112 chr12 57175932 57175932 1 + C G BLCA 57175932 + 57175912 57175952 41 GGGAAGAATTGTCAATGTCTCCAGCATTCTGGGAAGAGTTG GGGAAGAATTGTCAATGTCTGCAGCATTCTGGGAAGAGTTG Direct Gain 0 0.938372699108174 NA NA prediction 0.876745398216347 Functional Gain - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57175932 chr12:57175932 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40320 0 0 0 0 1 HSD17B6 chr12:57176016 5'GT 57176016 Upstream 85bp 37113 chr4 55592157 55592157 1 + A G STAD 55592157 + 55592137 55592177 41 CACGGTTGAATGTAAGGCTTACAACGATGTGGGCAAGACTT CACGGTTGAATGTAAGGCTTGCAACGATGTGGGCAAGACTT Direct Gain 0 0.938368429960817 NA NA prediction 0.876736859921634 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55592157 chr4:55592157 nonsynonymous SNV 0.974 0 21 hm7G_associated_SNPs_40322 0 0 0 0 2 KIT chr4:55592204 5'GT 55592204 Upstream 48bp 37114 chr4 55592157 55592157 1 + A G STAD 55592157 + 55592137 55592177 41 CACGGTTGAATGTAAGGCTTACAACGATGTGGGCAAGACTT CACGGTTGAATGTAAGGCTTGCAACGATGTGGGCAAGACTT Direct Gain 0 0.938368429960817 NA NA prediction 0.876736859921634 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55592157 chr4:55592157 nonsynonymous SNV 0.974 0 21 hm7G_associated_SNPs_40322 0 0 0 0 2 KIT chr4:55592216 5'GT 55592216 Upstream 60bp 37115 chr9 107516855 107516855 1 + C G CESC 107516855 + 107516835 107516875 41 TCTATGAACTGGCCACTTTTCAGATGAAACCTGGTGGGCCA TCTATGAACTGGCCACTTTTGAGATGAAACCTGGTGGGCCA Direct Gain 0 0.938362274286808 NA NA prediction 0.876724548573617 Functional Gain - NIPSNAP3A ENSG00000136783 CDS Human protein_coding chr9:107516855 chr9:107516855 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_40323 0 0 0 0 1 NIPSNAP3A chr9:107516832 3'AG 107516832 Downstream 24bp 37116 chr2 160621181 160621181 1 + C G BLCA 160621181 + 160621161 160621201 41 CAGGCACATATGGAAGATCTCGAAAGTAGGTGGAATTTCCC CAGGCACATATGGAAGATCTGGAAAGTAGGTGGAATTTCCC Direct Gain 0 0.938359585058209 NA NA prediction 0.876719170116418 Functional Gain - MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160621181 chr2:160621181 synonymous SNV . 0 21 hm7G_associated_SNPs_40324 0 0 1 0 2 MARCH7 chr2:160621137 3'AG 160621137 Downstream 45bp 37117 chr2 160621181 160621181 1 + C G BLCA 160621181 + 160621161 160621201 41 CAGGCACATATGGAAGATCTCGAAAGTAGGTGGAATTTCCC CAGGCACATATGGAAGATCTGGAAAGTAGGTGGAATTTCCC Direct Gain 0 0.938359585058209 NA NA prediction 0.876719170116418 Functional Gain - MARCH7 ENSG00000136536 CDS Human protein_coding chr2:160621181 chr2:160621181 synonymous SNV . 0 21 hm7G_associated_SNPs_40324 0 0 1 0 2 MARCH7 chr2:160621185 5'GT 160621185 Upstream 5bp 37118 chr12 118582395 118582395 1 + C G BLCA 118582395 + 118582375 118582415 41 CTGCCTCTCCCCACAGGCCTCCACCGCTATGTCTGGCTGGT CTGCCTCTCCCCACAGGCCTGCACCGCTATGTCTGGCTGGT Direct Gain 0 0.938358729856874 NA NA prediction 0.876717459713749 Functional Gain - PEBP1 ENSG00000089220 CDS Human protein_coding chr12:118582395 chr12:118582395 synonymous SNV . 0 21 hm7G_associated_SNPs_40325 0 0 1 0 1 PEBP1 chr12:118582391 3'AG 118582391 Downstream 5bp 37119 chr10 7762836 7762836 1 + C G LUSC 7762836 + 7762816 7762856 41 TAGGTAGATGTGTGGGTTATCGAACCACAGGGACTGAGATT TAGGTAGATGTGTGGGTTATGGAACCACAGGGACTGAGATT Direct Gain 0 0.938353059611163 NA NA prediction 0.876706119222327 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762836 chr10:7762836 nonsynonymous SNV 0.111 2 21 hm7G_associated_SNPs_40326 0 0 0 0 2 ITIH2 chr10:7762819 3'AG 7762819 Downstream 18bp 37120 chr10 7762836 7762836 1 + C G LUSC 7762836 + 7762816 7762856 41 TAGGTAGATGTGTGGGTTATCGAACCACAGGGACTGAGATT TAGGTAGATGTGTGGGTTATGGAACCACAGGGACTGAGATT Direct Gain 0 0.938353059611163 NA NA prediction 0.876706119222327 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7762836 chr10:7762836 nonsynonymous SNV 0.111 2 21 hm7G_associated_SNPs_40326 0 0 0 0 2 ITIH2 chr10:7762926 5'GT 7762926 Upstream 91bp 37121 chr8 75927073 75927073 1 + A G LUSC 75927073 + 75927053 75927093 41 CTGGTGGGGCCATGCCCCTTACAAACATGGGCGGCCCTGTT CTGGTGGGGCCATGCCCCTTGCAAACATGGGCGGCCCTGTT Direct Gain 0 0.938346615568263 NA NA prediction 0.876693231136526 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75927073 chr8:75927073 nonsynonymous SNV 0.965 4 21 hm7G_associated_SNPs_40328 0 0 0 0 2 CRISPLD1 chr8:75927047 3'AG 75927047 Downstream 27bp 37122 chr8 75927073 75927073 1 + A G LUSC 75927073 + 75927053 75927093 41 CTGGTGGGGCCATGCCCCTTACAAACATGGGCGGCCCTGTT CTGGTGGGGCCATGCCCCTTGCAAACATGGGCGGCCCTGTT Direct Gain 0 0.938346615568263 NA NA prediction 0.876693231136526 Functional Gain - CRISPLD1 ENSG00000121005 CDS Human protein_coding chr8:75927073 chr8:75927073 nonsynonymous SNV 0.965 4 21 hm7G_associated_SNPs_40328 0 0 0 0 2 CRISPLD1 chr8:75927147 5'GT 75927147 Upstream 75bp 37123 chr2 207827304 207827304 1 + A G STAD 207827304 + 207827284 207827324 41 AATTCTCACACCTTACGGCTACACCAAAAATAAATCAAGTA AATTCTCACACCTTACGGCTGCACCAAAAATAAATCAAGTA Direct Gain 0 0.938315137956277 NA NA prediction 0.876630275912553 Functional Gain - CPO ENSG00000144410 CDS Human protein_coding chr2:207827304 chr2:207827304 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_40331 0 0 0 0 1 CPO chr2:207827338 5'GT 207827338 Upstream 35bp 37124 chr1 36754665 36754665 1 + C G LUAD 36754665 + 36754645 36754685 41 GTGTTTTTATAAATAGGTATCTAGAAGAGCAGAAGACAGAG GTGTTTTTATAAATAGGTATGTAGAAGAGCAGAAGACAGAG Direct Gain 0 0.938303404555244 NA NA prediction 0.876606809110489 Functional Gain - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36754665 chr1:36754665 nonsynonymous SNV 0.980 1 21 hm7G_associated_SNPs_40332 0 0 1 0 1 THRAP3 chr1:36754661 3'AG 36754661 Downstream 5bp 37125 chr12 8290801 8290801 1 + C G GBM 8290801 + 8290781 8290821 41 TGTGCTAAATTTTCGTAAATCACCCAAAAGATGGGGCTGGA TGTGCTAAATTTTCGTAAATGACCCAAAAGATGGGGCTGGA Direct Gain 0 0.938250049416063 NA NA prediction 0.876500098832126 Functional Gain - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8290801 chr12:8290801 stopgain 0.000 0 21 hm7G_associated_SNPs_40333 0 0 1 0 1 CLEC4A chr12:8290736 3'AG 8290736 Downstream 66bp 37126 chr10 118327271 118327271 1 + C G rs74568396 118327271 + 118327251 118327291 41 AACTTCTGTAGTCCAGAAACCGTCAGGGAGGAAGTTCTGCT AACTTCTGTAGTCCAGAAACGGTCAGGGAGGAAGTTCTGCT Direct Gain 0 0.938240699526761 NA NA prediction 0.876481399053521 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118327271 chr10:118327271 synonymous SNV . 0 21 hm7G_associated_SNPs_40334 0 0 0 0 1 PNLIP chr10:118327247 3'AG 118327247 Downstream 25bp 37127 chr1 86939461 86939461 1 + A G rs140897904 86939461 + 86939441 86939481 41 TCCAGGTAATGATGAACCCTACACTGAGCAGATGGGCAACT TCCAGGTAATGATGAACCCTGCACTGAGCAGATGGGCAACT Direct Gain 0 0.938223473459894 NA NA prediction 0.876446946919787 Functional Gain - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86939461 chr1:86939461 nonsynonymous SNV 0.248 4 21 hm7G_associated_SNPs_40335 0 0 0 0 2 CLCA1 chr1:86939412 3'AG 86939412 Downstream 50bp 37128 chr1 86939461 86939461 1 + A G rs140897904 86939461 + 86939441 86939481 41 TCCAGGTAATGATGAACCCTACACTGAGCAGATGGGCAACT TCCAGGTAATGATGAACCCTGCACTGAGCAGATGGGCAACT Direct Gain 0 0.938223473459894 NA NA prediction 0.876446946919787 Functional Gain - CLCA1 ENSG00000016490 CDS Human protein_coding chr1:86939461 chr1:86939461 nonsynonymous SNV 0.248 4 21 hm7G_associated_SNPs_40335 0 0 0 0 2 CLCA1 chr1:86939559 5'GT 86939559 Upstream 99bp 37129 chr4 17623235 17623235 1 + T G COAD 17623235 + 17623215 17623255 41 GATCAGTGTATCCAGAAGTTTCTGGATATTGCAAGACAGAC GATCAGTGTATCCAGAAGTTGCTGGATATTGCAAGACAGAC Direct Gain 0 0.938213908908904 NA NA prediction 0.876427817817808 Functional Gain - MED28 ENSG00000118579 CDS Human protein_coding chr4:17623235 chr4:17623235 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_40336 0 0 1 2 2 MED28 chr4:17623210 3'AG 17623210 Downstream 26bp 37130 chr4 17623235 17623235 1 + T G COAD 17623235 + 17623215 17623255 41 GATCAGTGTATCCAGAAGTTTCTGGATATTGCAAGACAGAC GATCAGTGTATCCAGAAGTTGCTGGATATTGCAAGACAGAC Direct Gain 0 0.938213908908904 NA NA prediction 0.876427817817808 Functional Gain - MED28 ENSG00000118579 CDS Human protein_coding chr4:17623235 chr4:17623235 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_40336 0 0 1 2 2 MED28 chr4:17623322 5'GT 17623322 Upstream 88bp 37131 chr22 42052981 42052981 1 + C G CESC 42052981 + 42052961 42053001 41 CTGAAAAAATCATGGCAACTCCAGAGCAGGTGGGCAAGATG CTGAAAAAATCATGGCAACTGCAGAGCAGGTGGGCAAGATG Direct Gain 0 0.938212687814131 NA NA prediction 0.876425375628263 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42052981 chr22:42052981 nonsynonymous SNV 0.229 0 21 hm7G_associated_SNPs_40337 0 0 1 0 2 XRCC6 chr22:42052907 3'AG 42052907 Downstream 75bp 37132 chr22 42052981 42052981 1 + C G CESC 42052981 + 42052961 42053001 41 CTGAAAAAATCATGGCAACTCCAGAGCAGGTGGGCAAGATG CTGAAAAAATCATGGCAACTGCAGAGCAGGTGGGCAAGATG Direct Gain 0 0.938212687814131 NA NA prediction 0.876425375628263 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42052981 chr22:42052981 nonsynonymous SNV 0.229 0 21 hm7G_associated_SNPs_40337 0 0 1 0 2 XRCC6 chr22:42053036 5'GT 42053036 Upstream 56bp 37133 chr14 74347933 74347933 1 + A G LGG 74347933 + 74347913 74347953 41 GATTTCTGGTATTAAATTATAAAGACAAATTTGAGCCTGGC GATTTCTGGTATTAAATTATGAAGACAAATTTGAGCCTGGC Direct Gain 0 0.938210249295491 NA NA prediction 0.876420498590982 Functional Gain - PTGR2 ENSG00000140043;ENSG00000258653 CDS Human other chr14:74347933 chr14:74347933 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_40338 0 0 0 0 2 PTGR2 chr14:74347908 3'AG 74347908 Downstream 26bp 37134 chr14 74347933 74347933 1 + A G LGG 74347933 + 74347913 74347953 41 GATTTCTGGTATTAAATTATAAAGACAAATTTGAGCCTGGC GATTTCTGGTATTAAATTATGAAGACAAATTTGAGCCTGGC Direct Gain 0 0.938210249295491 NA NA prediction 0.876420498590982 Functional Gain - PTGR2 ENSG00000140043;ENSG00000258653 CDS Human other chr14:74347933 chr14:74347933 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_40338 0 0 0 0 2 PTGR2 chr14:74347995 5'GT 74347995 Upstream 63bp 37135 chr3 125690975 125690975 1 + T G UCEC 125690975 + 125690955 125690995 41 GAGTTTGCCAAAGCCGCCATTCGGGCGCAGCCGCAGGACCT GAGTTTGCCAAAGCCGCCATGCGGGCGCAGCCGCAGGACCT Direct Gain 0 0.938187183616383 NA NA prediction 0.876374367232766 Functional Gain - ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125690975 chr3:125690975 nonsynonymous SNV 0.006 3 21 hm7G_associated_SNPs_40339 0 0 0 0 2 ROPN1B chr3:125690886 3'AG 125690886 Downstream 90bp 37136 chr3 125690975 125690975 1 + T G UCEC 125690975 + 125690955 125690995 41 GAGTTTGCCAAAGCCGCCATTCGGGCGCAGCCGCAGGACCT GAGTTTGCCAAAGCCGCCATGCGGGCGCAGCCGCAGGACCT Direct Gain 0 0.938187183616383 NA NA prediction 0.876374367232766 Functional Gain - ROPN1B ENSG00000114547 CDS Human protein_coding chr3:125690975 chr3:125690975 nonsynonymous SNV 0.006 3 21 hm7G_associated_SNPs_40339 0 0 0 0 2 ROPN1B chr3:125691013 5'GT 125691013 Upstream 39bp 37137 chr10 70101520 70101520 1 + T G UCEC 70101520 + 70101500 70101540 41 TTTTTTCTTTTTAAAGATAATCAGGGAGGCTATGGATCAGT TTTTTTCTTTTTAAAGATAAGCAGGGAGGCTATGGATCAGT Direct Gain 0 0.938172357522869 NA NA prediction 0.876344715045737 Functional Gain - HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70101520 chr10:70101520 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_40340 0 0 1 0 2 HNRNPH3 chr10:70101516 3'AG 70101516 Downstream 5bp 37138 chr10 70101520 70101520 1 + T G UCEC 70101520 + 70101500 70101540 41 TTTTTTCTTTTTAAAGATAATCAGGGAGGCTATGGATCAGT TTTTTTCTTTTTAAAGATAAGCAGGGAGGCTATGGATCAGT Direct Gain 0 0.938172357522869 NA NA prediction 0.876344715045737 Functional Gain - HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70101520 chr10:70101520 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_40340 0 0 1 0 2 HNRNPH3 chr10:70101608 5'GT 70101608 Upstream 89bp 37139 chr1 34329950 34329950 1 + C G BLCA 34329950 + 34329930 34329970 41 GGAAAAATGGAGATCCATCTCAAAGCATGAAAAGGCCAAAT GGAAAAATGGAGATCCATCTGAAAGCATGAAAAGGCCAAAT Direct Gain 0 0.938162599832013 NA NA prediction 0.876325199664027 Functional Gain - HMGB4 ENSG00000176256 CDS Human protein_coding chr1:34329950 chr1:34329950 stopgain 0.999 1 21 hm7G_associated_SNPs_40341 0 0 0 0 1 HMGB4 chr1:34329864 3'AG 34329864 Downstream 87bp 37140 chr1 151018276 151018276 1 + A G LIHC 151018276 + 151018256 151018296 41 CTCATGTTGTTTTTCAGGCTACGGAAAAACCTGCGAGCCCT CTCATGTTGTTTTTCAGGCTGCGGAAAAACCTGCGAGCCCT Direct Gain 0 0.938132885036514 NA NA prediction 0.876265770073028 Functional Gain - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151018276 chr1:151018276 synonymous SNV . 0 21 hm7G_associated_SNPs_40343 0 0 0 1 2 BNIPL chr1:151018273 3'AG 151018273 Downstream 4bp 37141 chr1 151018276 151018276 1 + A G LIHC 151018276 + 151018256 151018296 41 CTCATGTTGTTTTTCAGGCTACGGAAAAACCTGCGAGCCCT CTCATGTTGTTTTTCAGGCTGCGGAAAAACCTGCGAGCCCT Direct Gain 0 0.938132885036514 NA NA prediction 0.876265770073028 Functional Gain - BNIPL ENSG00000163141 CDS Human protein_coding chr1:151018276 chr1:151018276 synonymous SNV . 0 21 hm7G_associated_SNPs_40343 0 0 0 1 2 BNIPL chr1:151018359 5'GT 151018359 Upstream 84bp 37142 chr4 166254772 166254772 1 + C G BLCA 166254772 + 166254752 166254792 41 ATATGAAAAAATACAAAATTCAAAAGGTGAGTATAAGGGAC ATATGAAAAAATACAAAATTGAAAAGGTGAGTATAAGGGAC Direct Gain 0 0.938103099451345 NA NA prediction 0.876206198902689 Functional Gain - MSMO1 ENSG00000052802 CDS Human protein_coding chr4:166254772 chr4:166254772 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40345 0 0 1 0 1 MSMO1 chr4:166254777 5'GT 166254777 Upstream 6bp 37143 chr8 97621688 97621688 1 + A G CESC 97621688 + 97621668 97621708 41 GTTGGTGTATCGCATGAGAAAGAAGGATGAAGGAAGCTATG GTTGGTGTATCGCATGAGAAGGAAGGATGAAGGAAGCTATG Direct Gain 0 0.938049619706113 NA NA prediction 0.876099239412226 Functional Gain - SDC2 ENSG00000169439 CDS Human protein_coding chr8:97621688 chr8:97621688 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40347 0 0 1 0 1 SDC2 chr8:97621613 3'AG 97621613 Downstream 76bp 37144 chr17 60484498 60484498 1 + A G UCEC 60484498 + 60484478 60484518 41 TTCAAAGACATGCAGAAATTAGAGATGCTAAGAATAAAGGA TTCAAAGACATGCAGAAATTGGAGATGCTAAGAATAAAGGA Direct Gain 0 0.938043683994441 NA NA prediction 0.876087367988883 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60484498 chr17:60484498 synonymous SNV . 0 21 hm7G_associated_SNPs_40348 0 0 0 0 1 EFCAB3 chr17:60484573 5'GT 60484573 Upstream 76bp 37145 chr4 187000110 187000110 1 + A G STAD 187000110 + 187000090 187000130 41 AACAATAAAATTCAAGCGCTAAAAAGTGAAGAACTGGATAT AACAATAAAATTCAAGCGCTGAAAAGTGAAGAACTGGATAT Direct Gain 0 0.938043039994828 NA NA prediction 0.876086079989655 Functional Gain - TLR3 ENSG00000164342 CDS Human protein_coding chr4:187000110 chr4:187000110 synonymous SNV . 0 21 hm7G_associated_SNPs_40349 0 0 0 0 1 TLR3 chr4:187000185 5'GT 187000185 Upstream 76bp 37146 chr11 5631786 5631786 1 + A G UCEC 5631786 + 5631766 5631806 41 GCTGACAGATGTCCAAAGCTACTGGGGTAAGTAGAAGCCAT GCTGACAGATGTCCAAAGCTGCTGGGGTAAGTAGAAGCCAT Direct Gain 0 0.938026526324117 NA NA prediction 0.876053052648234 Functional Gain - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5631786 chr11:5631786 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40351 0 0 0 0 2 TRIM6;TRIM6-TRIM34 chr11:5631765 3'AG 5631765 Downstream 22bp 37147 chr11 5631786 5631786 1 + A G UCEC 5631786 + 5631766 5631806 41 GCTGACAGATGTCCAAAGCTACTGGGGTAAGTAGAAGCCAT GCTGACAGATGTCCAAAGCTGCTGGGGTAAGTAGAAGCCAT Direct Gain 0 0.938026526324117 NA NA prediction 0.876053052648234 Functional Gain - TRIM6;TRIM6-TRIM34 ENSG00000121236;ENSG00000258588 CDS Human other chr11:5631786 chr11:5631786 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40351 0 0 0 0 2 TRIM6;TRIM6-TRIM34 chr11:5631791 5'GT 5631791 Upstream 6bp 37148 chr12 72092863 72092863 1 + A G UCEC 72092863 + 72092843 72092883 41 AGGATCAATTGTGGACTCATACTTAGGGGCTACAATGCAGT AGGATCAATTGTGGACTCATGCTTAGGGGCTACAATGCAGT Direct Gain 0 0.938024803440175 NA NA prediction 0.876049606880349 Functional Gain - TMEM19 ENSG00000139291 CDS Human protein_coding chr12:72092863 chr12:72092863 nonsynonymous SNV 0.976 3 21 hm7G_associated_SNPs_40352 0 0 1 3 1 TMEM19 chr12:72092889 5'GT 72092889 Upstream 27bp 37149 chr11 8009216 8009216 1 + A G CESC 8009216 + 8009196 8009236 41 GGCCTCCATTGTGGACAGCTACGAGAGACGCAACGAGGGTG GGCCTCCATTGTGGACAGCTGCGAGAGACGCAACGAGGGTG Direct Gain 0 0.938020022572024 NA NA prediction 0.876040045144048 Functional Gain - EIF3F ENSG00000175390 CDS Human protein_coding chr11:8009216 chr11:8009216 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40353 0 0 0 0 1 EIF3F chr11:8009263 5'GT 8009263 Upstream 48bp 37150 chr11 117150675 117150675 1 + A G UCEC 117150675 + 117150655 117150695 41 AAGAATCAGGATGGCGAAATAAATAGGAACATTATGGAAGA AAGAATCAGGATGGCGAAATGAATAGGAACATTATGGAAGA Direct Gain 0 0.938014085147864 NA NA prediction 0.876028170295729 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117150675 chr11:117150675 nonsynonymous SNV 0.784 1 21 hm7G_associated_SNPs_40355 0 0 1 0 2 RNF214 chr11:117150624 3'AG 117150624 Downstream 52bp 37151 chr11 117150675 117150675 1 + A G UCEC 117150675 + 117150655 117150695 41 AAGAATCAGGATGGCGAAATAAATAGGAACATTATGGAAGA AAGAATCAGGATGGCGAAATGAATAGGAACATTATGGAAGA Direct Gain 0 0.938014085147864 NA NA prediction 0.876028170295729 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117150675 chr11:117150675 nonsynonymous SNV 0.784 1 21 hm7G_associated_SNPs_40355 0 0 1 0 2 RNF214 chr11:117150720 5'GT 117150720 Upstream 46bp 37152 chr4 83971081 83971081 1 + A G UCEC 83971081 + 83971061 83971101 41 TCTATATATGAGAAAGAAGAAGATTGGAGAAATGCAGCCCA TCTATATATGAGAAAGAAGAGGATTGGAGAAATGCAGCCCA Direct Gain 0 0.937960748638537 NA NA prediction 0.875921497277074 Functional Gain - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83971081 chr4:83971081 synonymous SNV . 0 21 hm7G_associated_SNPs_40359 0 0 1 0 2 COPS4 chr4:83971034 3'AG 83971034 Downstream 48bp 37153 chr4 83971081 83971081 1 + A G UCEC 83971081 + 83971061 83971101 41 TCTATATATGAGAAAGAAGAAGATTGGAGAAATGCAGCCCA TCTATATATGAGAAAGAAGAGGATTGGAGAAATGCAGCCCA Direct Gain 0 0.937960748638537 NA NA prediction 0.875921497277074 Functional Gain - COPS4 ENSG00000138663 CDS Human protein_coding chr4:83971081 chr4:83971081 synonymous SNV . 0 21 hm7G_associated_SNPs_40359 0 0 1 0 2 COPS4 chr4:83971137 5'GT 83971137 Upstream 57bp 37154 chr1 153945262 153945262 1 + C G CESC 153945262 + 153945242 153945282 41 TGACCGATGAGGAGAAGCGTCTGCTGGGGCAGGAAGGGGTT TGACCGATGAGGAGAAGCGTGTGCTGGGGCAGGAAGGGGTT Direct Gain 0 0.937868293764248 NA NA prediction 0.875736587528495 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153945262 chr1:153945262 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40361 0 0 1 0 2 CREB3L4 chr1:153945220 3'AG 153945220 Downstream 43bp 37155 chr1 153945262 153945262 1 + C G CESC 153945262 + 153945242 153945282 41 TGACCGATGAGGAGAAGCGTCTGCTGGGGCAGGAAGGGGTT TGACCGATGAGGAGAAGCGTGTGCTGGGGCAGGAAGGGGTT Direct Gain 0 0.937868293764248 NA NA prediction 0.875736587528495 Functional Gain - CREB3L4 ENSG00000143578 CDS Human protein_coding chr1:153945262 chr1:153945262 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40361 0 0 1 0 2 CREB3L4 chr1:153945312 5'GT 153945312 Upstream 51bp 37156 chr7 150217064 150217064 1 + T G LUAD 150217064 + 150217044 150217084 41 AGAGCCTCCTGACGTGAGCATGGCTGAGAGTGAGGACCGCT AGAGCCTCCTGACGTGAGCAGGGCTGAGAGTGAGGACCGCT Direct Gain 0 0.937782102917279 NA NA prediction 0.875564205834559 Functional Gain - GIMAP7 ENSG00000179144 CDS Human protein_coding chr7:150217064 chr7:150217064 nonsynonymous SNV 0.430 3 21 hm7G_associated_SNPs_40364 0 0 0 0 1 GIMAP7 chr7:150217022 3'AG 150217022 Downstream 43bp 37157 chr12 4708889 4708889 1 + A G UCEC 4708889 + 4708869 4708909 41 CTAGGAAAATATAGTGCTATACCAAAAGGGCCAAGCCTCTG CTAGGAAAATATAGTGCTATGCCAAAAGGGCCAAGCCTCTG Direct Gain 0 0.937776485869421 NA NA prediction 0.875552971738843 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4708889 chr12:4708889 nonsynonymous SNV 0.709 2 21 hm7G_associated_SNPs_40365 0 0 0 0 2 DYRK4 chr12:4708873 3'AG 4708873 Downstream 17bp 37158 chr12 4708889 4708889 1 + A G UCEC 4708889 + 4708869 4708909 41 CTAGGAAAATATAGTGCTATACCAAAAGGGCCAAGCCTCTG CTAGGAAAATATAGTGCTATGCCAAAAGGGCCAAGCCTCTG Direct Gain 0 0.937776485869421 NA NA prediction 0.875552971738843 Functional Gain - DYRK4 ENSG00000010219 CDS Human protein_coding chr12:4708889 chr12:4708889 nonsynonymous SNV 0.709 2 21 hm7G_associated_SNPs_40365 0 0 0 0 2 DYRK4 chr12:4708954 5'GT 4708954 Upstream 66bp 37159 chr14 21167607 21167607 1 + C G HNSC 21167607 + 21167587 21167627 41 GCTGGGGCTGGTCCAGCCCTCCTATGGCCAGGATGGCATGT GCTGGGGCTGGTCCAGCCCTGCTATGGCCAGGATGGCATGT Direct Gain 0 0.937775901178255 NA NA prediction 0.875551802356509 Functional Gain - RNASE4 ENSG00000258818 CDS Human protein_coding chr14:21167607 chr14:21167607 nonsynonymous SNV 0.950 2 21 hm7G_associated_SNPs_40366 0 0 1 0 1 RNASE4 chr14:21167514 3'AG 21167514 Downstream 94bp 37160 chr17 60472431 60472431 1 + C G BLCA 60472431 + 60472411 60472451 41 TTTGTTTTCCCTCCATAGTTCCAGAAAAGGAGACCTGTTTA TTTGTTTTCCCTCCATAGTTGCAGAAAAGGAGACCTGTTTA Direct Gain 0 0.937761037447685 NA NA prediction 0.87552207489537 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60472431 chr17:60472431 nonsynonymous SNV 0.911 3 21 hm7G_associated_SNPs_40369 0 0 0 0 1 EFCAB3 chr17:60472429 3'AG 60472429 Downstream 3bp 37161 chr14 23314932 23314932 1 + A G UCEC 23314932 + 23314912 23314952 41 TGCAGTCTTCACTTACTTCTACAAGGGGAACAAATACTGGA TGCAGTCTTCACTTACTTCTGCAAGGGGAACAAATACTGGA Direct Gain 0 0.937756785249472 NA NA prediction 0.875513570498943 Functional Gain - MMP14 ENSG00000157227 CDS Human protein_coding chr14:23314932 chr14:23314932 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40370 0 0 0 0 1 MMP14 chr14:23314917 3'AG 23314917 Downstream 16bp 37162 chr4 69342025 69342025 1 + C G LUAD 69342025 + 69342005 69342045 41 CTAGGTCAGAGTCTCAGGATCGTTGGTGGGACAGAAGTAGA CTAGGTCAGAGTCTCAGGATGGTTGGTGGGACAGAAGTAGA Direct Gain 0 0.937724970862542 NA NA prediction 0.875449941725084 Functional Gain - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69342025 chr4:69342025 nonsynonymous SNV 0.014 4 21 hm7G_associated_SNPs_40371 0 0 0 0 1 TMPRSS11E chr4:69341979 3'AG 69341979 Downstream 47bp 37163 chr12 64815114 64815114 1 + A G LUSC 64815114 + 64815094 64815134 41 AATTAATTAAGAATGGGGATATTAAGAATGCTCAAGAGGCA AATTAATTAAGAATGGGGATGTTAAGAATGCTCAAGAGGCA Direct Gain 0 0.937715476688673 NA NA prediction 0.875430953377347 Functional Gain - XPOT ENSG00000184575 CDS Human protein_coding chr12:64815114 chr12:64815114 nonsynonymous SNV 0.977 0 21 hm7G_associated_SNPs_40372 0 0 1 0 1 XPOT chr12:64815015 3'AG 64815015 Downstream 100bp 37164 chr20 47858649 47858649 1 + C G HNSC 47858649 + 47858629 47858669 41 AGGTCTCAGTTTGAAATCCTCAAGGCGCAGATGTTTGCTGA AGGTCTCAGTTTGAAATCCTGAAGGCGCAGATGTTTGCTGA Direct Gain 0 0.937694051538657 NA NA prediction 0.875388103077313 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47858649 chr20:47858649 synonymous SNV . 0 21 hm7G_associated_SNPs_40374 0 0 1 0 2 DDX27 chr20:47858620 3'AG 47858620 Downstream 30bp 37165 chr20 47858649 47858649 1 + C G HNSC 47858649 + 47858629 47858669 41 AGGTCTCAGTTTGAAATCCTCAAGGCGCAGATGTTTGCTGA AGGTCTCAGTTTGAAATCCTGAAGGCGCAGATGTTTGCTGA Direct Gain 0 0.937694051538657 NA NA prediction 0.875388103077313 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47858649 chr20:47858649 synonymous SNV . 0 21 hm7G_associated_SNPs_40374 0 0 1 0 2 DDX27 chr20:47858743 5'GT 47858743 Upstream 95bp 37166 chr3 24009398 24009398 1 + C G CESC 24009398 + 24009378 24009418 41 TAGTGTGGATGATTTACACTCAATGGGAGCAGGGGATCTGC TAGTGTGGATGATTTACACTGAATGGGAGCAGGGGATCTGC Direct Gain 0 0.937678141089144 NA NA prediction 0.875356282178289 Functional Gain - NR1D2 ENSG00000174738 CDS Human protein_coding chr3:24009398 chr3:24009398 stopgain 1.000 1 21 hm7G_associated_SNPs_40375 0 0 1 0 1 NR1D2 chr3:24009304 3'AG 24009304 Downstream 95bp 37167 chr10 96352252 96352252 1 + A G STAD 96352252 + 96352232 96352272 41 GCTTGATGGGTCCATGTCTTACTCAGAGAGAGAAAAAAACG GCTTGATGGGTCCATGTCTTGCTCAGAGAGAGAAAAAAACG Direct Gain 0 0.93766311351423 NA NA prediction 0.87532622702846 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96352252 chr10:96352252 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_40376 0 0 1 0 1 HELLS chr10:96352271 5'GT 96352271 Upstream 20bp 37168 chr1 1389856 1389856 1 + T G PRAD 1389856 + 1389836 1389876 41 ACGTCCCGCATCACGGTGCTTGAGGCGCTGCGGCACCCCAT ACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCCAT Direct Gain 0 0.93764550627028 NA NA prediction 0.87529101254056 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389856 chr1:1389856 synonymous SNV . 0 21 hm7G_associated_SNPs_40378 0 0 0 0 1 ATAD3C chr1:1389880 5'GT 1389880 Upstream 25bp 37169 chr3 112063822 112063822 1 + C G STAD 112063822 + 112063802 112063842 41 TCCATAGTGCAAGTGGTGACCCAGGATGAAAGAGAGCAGCT TCCATAGTGCAAGTGGTGACGCAGGATGAAAGAGAGCAGCT Direct Gain 0 0.937550534688587 NA NA prediction 0.875101069377173 Functional Gain - CD200 ENSG00000091972 CDS Human protein_coding chr3:112063822 chr3:112063822 synonymous SNV . 0 21 hm7G_associated_SNPs_40383 0 0 0 0 1 CD200 chr3:112063809 3'AG 112063809 Downstream 14bp 37170 chr3 39450137 39450137 1 + T G PRAD 39450137 + 39450117 39450157 41 AAGAGGACCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCAAT AAGAGGACCTGGGAGAAGCTGCTGCTGGCAGCTCGTGCAAT Direct Gain 0 0.937539128446929 NA NA prediction 0.875078256893859 Functional Gain - RPSA ENSG00000168028 CDS Human protein_coding chr3:39450137 chr3:39450137 synonymous SNV . 0 21 hm7G_associated_SNPs_40384 0 0 1 7 3 RPSA chr3:39450097 3'AG 39450097 Downstream 41bp 37171 chr3 39450137 39450137 1 + T G PRAD 39450137 + 39450117 39450157 41 AAGAGGACCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCAAT AAGAGGACCTGGGAGAAGCTGCTGCTGGCAGCTCGTGCAAT Direct Gain 0 0.937539128446929 NA NA prediction 0.875078256893859 Functional Gain - RPSA ENSG00000168028 CDS Human protein_coding chr3:39450137 chr3:39450137 synonymous SNV . 0 21 hm7G_associated_SNPs_40384 0 0 1 7 3 RPSA chr3:39450215 5'GT 39450215 Upstream 79bp 37172 chr3 39450137 39450137 1 + T G PRAD 39450137 + 39450117 39450157 41 AAGAGGACCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCAAT AAGAGGACCTGGGAGAAGCTGCTGCTGGCAGCTCGTGCAAT Direct Gain 0 0.937539128446929 NA NA prediction 0.875078256893859 Functional Gain - RPSA ENSG00000168028 CDS Human protein_coding chr3:39450137 chr3:39450137 synonymous SNV . 0 21 hm7G_associated_SNPs_40384 0 0 1 7 3 RPSA chr3:39450230 5'GT 39450230 Upstream 94bp 37173 chr12 49691226 49691226 1 + C G rs62636517 49691226 + 49691206 49691246 41 CAGGCGGGCGCTGCGCGGCTCGAGGAGGAGCTGCGACAGCT CAGGCGGGCGCTGCGCGGCTGGAGGAGGAGCTGCGACAGCT Direct Gain 0 0.937516240133405 NA NA prediction 0.87503248026681 Functional Gain - PRPH ENSG00000135406 CDS Human protein_coding chr12:49691226 chr12:49691226 synonymous SNV . 0 21 hm7G_associated_SNPs_40386 1 0 0 0 1 PRPH chr12:49691140 3'AG 49691140 Downstream 87bp 37174 chr2 10140759 10140759 1 + A G STAD 10140759 + 10140739 10140779 41 CGACAACATTGTGAAGCATTACTCCAATGAGGACACCTTCC CGACAACATTGTGAAGCATTGCTCCAATGAGGACACCTTCC Direct Gain 0 0.937496206910805 NA NA prediction 0.874992413821609 Functional Gain - GRHL1 ENSG00000134317 CDS Human protein_coding chr2:10140759 chr2:10140759 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40387 0 0 1 1 1 GRHL1 chr2:10140721 3'AG 10140721 Downstream 39bp 37175 chr19 3589884 3589884 1 + A G UCEC 3589884 + 3589864 3589904 41 TGATGACCTGCTGGAAAGCTACATGGGCATTCGGGACCCCG TGATGACCTGCTGGAAAGCTGCATGGGCATTCGGGACCCCG Direct Gain 0 0.937430667422684 NA NA prediction 0.874861334845369 Functional Gain - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589884 chr19:3589884 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_40391 0 0 0 0 2 GIPC3 chr19:3589829 3'AG 3589829 Downstream 56bp 37176 chr19 3589884 3589884 1 + A G UCEC 3589884 + 3589864 3589904 41 TGATGACCTGCTGGAAAGCTACATGGGCATTCGGGACCCCG TGATGACCTGCTGGAAAGCTGCATGGGCATTCGGGACCCCG Direct Gain 0 0.937430667422684 NA NA prediction 0.874861334845369 Functional Gain - GIPC3 ENSG00000179855 CDS Human protein_coding chr19:3589884 chr19:3589884 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_40391 0 0 0 0 2 GIPC3 chr19:3589910 5'GT 3589910 Upstream 27bp 37177 chr10 103360965 103360965 1 + C G HNSC 103360965 + 103360945 103360985 41 ATTTGCCTTCTGCAGCCTATCTTCATGCGCAAGGACACCAA ATTTGCCTTCTGCAGCCTATGTTCATGCGCAAGGACACCAA Direct Gain 0 0.937374333922725 NA NA prediction 0.874748667845449 Functional Gain - DPCD ENSG00000166171 CDS Human protein_coding chr10:103360965 chr10:103360965 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_40393 0 0 1 0 1 DPCD chr10:103360960 3'AG 103360960 Downstream 6bp 37178 chr2 73441405 73441405 1 + C G BLCA 73441405 + 73441385 73441425 41 CGCGCCCAAGATGGCGGCCTCCATGTGCGACGTGTTCTCCT CGCGCCCAAGATGGCGGCCTGCATGTGCGACGTGTTCTCCT Direct Gain 0 0.937317932146774 NA NA prediction 0.874635864293547 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73441405 chr2:73441405 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40394 0 0 1 0 1 SMYD5 chr2:73441490 5'GT 73441490 Upstream 86bp 37179 chr7 128503092 128503092 1 + T G UCEC 128503092 + 128503072 128503112 41 GGTGGAGAAGGATACAACCATCAATGAGATCGAAGACACTT GGTGGAGAAGGATACAACCAGCAATGAGATCGAAGACACTT Direct Gain 0 0.937316943529678 NA NA prediction 0.874633887059356 Functional Gain - ATP6V1F ENSG00000128524 CDS Human protein_coding chr7:128503092 chr7:128503092 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_40395 0 0 1 0 1 ATP6V1F chr7:128503116 5'GT 128503116 Upstream 25bp 37180 chr11 15098897 15098897 1 + T G LUAD 15098897 + 15098877 15098917 41 TCATCGGCTGGCAGGCTTGCTGAGCAGATCAGGGGGCATGG TCATCGGCTGGCAGGCTTGCGGAGCAGATCAGGGGGCATGG Direct Gain 0 0.937294274935584 NA NA prediction 0.874588549871167 Functional Gain - CALCB ENSG00000175868 CDS Human protein_coding chr11:15098897 chr11:15098897 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40397 0 0 0 0 1 CALCB chr11:15098832 3'AG 15098832 Downstream 66bp 37181 chr7 103007958 103007958 1 + A G HNSC 103007958 + 103007938 103007978 41 GTTTTGATCCTAGAGGCAATATTAAAGTGCTGATGGCCACT GTTTTGATCCTAGAGGCAATGTTAAAGTGCTGATGGCCACT Direct Gain 0 0.937258264859506 NA NA prediction 0.874516529719011 Functional Gain - PSMC2 ENSG00000161057 CDS Human protein_coding chr7:103007958 chr7:103007958 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_40399 0 0 1 0 1 PSMC2 chr7:103007860 3'AG 103007860 Downstream 99bp 37182 chr2 191231488 191231488 1 + C G BLCA 191231488 + 191231468 191231508 41 GAGCTTCTTAGCAAAGTCCTCAATGGTAACAAGGTGGCATC GAGCTTCTTAGCAAAGTCCTGAATGGTAACAAGGTGGCATC Direct Gain 0 0.937247138431476 NA NA prediction 0.874494276862952 Functional Gain - INPP1 ENSG00000151689 CDS Human protein_coding chr2:191231488 chr2:191231488 synonymous SNV . 0 21 hm7G_associated_SNPs_40401 0 0 0 0 1 INPP1 chr2:191231421 3'AG 191231421 Downstream 68bp 37183 chr6 117862090 117862090 1 + C G UCEC 117862090 + 117862070 117862110 41 TCCTCTCTCAGGTAATGATTCATTGGTGTGGCGCAAGACAA TCCTCTCTCAGGTAATGATTGATTGGTGTGGCGCAAGACAA Direct Gain 0 0.937239163629463 NA NA prediction 0.874478327258926 Functional Gain - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117862090 chr6:117862090 stopgain 0.976 0 21 hm7G_associated_SNPs_40402 0 0 0 0 2 DCBLD1 chr6:117862081 3'AG 117862081 Downstream 10bp 37184 chr6 117862090 117862090 1 + C G UCEC 117862090 + 117862070 117862110 41 TCCTCTCTCAGGTAATGATTCATTGGTGTGGCGCAAGACAA TCCTCTCTCAGGTAATGATTGATTGGTGTGGCGCAAGACAA Direct Gain 0 0.937239163629463 NA NA prediction 0.874478327258926 Functional Gain - DCBLD1 ENSG00000164465 CDS Human protein_coding chr6:117862090 chr6:117862090 stopgain 0.976 0 21 hm7G_associated_SNPs_40402 0 0 0 0 2 DCBLD1 chr6:117862188 5'GT 117862188 Upstream 99bp 37185 chr11 117115220 117115220 1 + A G LIHC 117115220 + 117115200 117115240 41 TACCAGGAGGTCCTGGACAAACAGAGGCAAGTGGAGAATCA TACCAGGAGGTCCTGGACAAGCAGAGGCAAGTGGAGAATCA Direct Gain 0 0.937237805902796 NA NA prediction 0.874475611805592 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117115220 chr11:117115220 synonymous SNV . 0 21 hm7G_associated_SNPs_40403 0 0 1 0 2 RNF214 chr11:117115161 3'AG 117115161 Downstream 60bp 37186 chr11 117115220 117115220 1 + A G LIHC 117115220 + 117115200 117115240 41 TACCAGGAGGTCCTGGACAAACAGAGGCAAGTGGAGAATCA TACCAGGAGGTCCTGGACAAGCAGAGGCAAGTGGAGAATCA Direct Gain 0 0.937237805902796 NA NA prediction 0.874475611805592 Functional Gain - RNF214 ENSG00000167257 CDS Human protein_coding chr11:117115220 chr11:117115220 synonymous SNV . 0 21 hm7G_associated_SNPs_40403 0 0 1 0 2 RNF214 chr11:117115301 5'GT 117115301 Upstream 82bp 37187 chr2 242662683 242662683 1 + A G COAD 242662683 + 242662663 242662703 41 TACCACGAAACCCAAAGGAAAATGGTGAGTGTGGGGACGCT TACCACGAAACCCAAAGGAAGATGGTGAGTGTGGGGACGCT Direct Gain 0 0.937224175136625 NA NA prediction 0.87444835027325 Functional Gain - ING5 ENSG00000168395 CDS Human protein_coding chr2:242662683 chr2:242662683 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_40406 0 0 1 0 1 ING5 chr2:242662686 5'GT 242662686 Upstream 4bp 37188 chr11 77553600 77553600 1 + A G UCEC 77553600 + 77553580 77553620 41 AAATGAAAGTAAAAGGCTCTAATACAACCTATAAGGACTGC AAATGAAAGTAAAAGGCTCTGATACAACCTATAAGGACTGC Direct Gain 0 0.937177582602362 NA NA prediction 0.874355165204723 Functional Gain - AAMDC ENSG00000087884 CDS Human protein_coding chr11:77553600 chr11:77553600 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_40409 0 0 1 0 2 AAMDC chr11:77553525 3'AG 77553525 Downstream 76bp 37189 chr11 77553600 77553600 1 + A G UCEC 77553600 + 77553580 77553620 41 AAATGAAAGTAAAAGGCTCTAATACAACCTATAAGGACTGC AAATGAAAGTAAAAGGCTCTGATACAACCTATAAGGACTGC Direct Gain 0 0.937177582602362 NA NA prediction 0.874355165204723 Functional Gain - AAMDC ENSG00000087884 CDS Human protein_coding chr11:77553600 chr11:77553600 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_40409 0 0 1 0 2 AAMDC chr11:77553674 5'GT 77553674 Upstream 75bp 37190 chr20 37380805 37380805 1 + C G HNSC 37380805 + 37380785 37380825 41 AAAACTGCAAGCGCATCAATCTTGGAGGAAGCCAAGCAGCT AAAACTGCAAGCGCATCAATGTTGGAGGAAGCCAAGCAGCT Direct Gain 0 0.937173539307862 NA NA prediction 0.874347078615723 Functional Gain - ACTR5 ENSG00000101442 CDS Human protein_coding chr20:37380805 chr20:37380805 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40410 0 0 1 0 1 ACTR5 chr20:37380774 3'AG 37380774 Downstream 32bp 37191 chr22 38209592 38209592 1 + A G COAD 38209592 + 38209572 38209612 41 CACCTGGACATGGCCGACCTAGAAGCCAAGCTGCAGGAGGC CACCTGGACATGGCCGACCTGGAAGCCAAGCTGCAGGAGGC Direct Gain 0 0.937153219079437 NA NA prediction 0.874306438158875 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38209592 chr22:38209592 synonymous SNV . 0 21 hm7G_associated_SNPs_40413 0 0 1 0 1 GCAT chr22:38209616 5'GT 38209616 Upstream 25bp 37192 chr16 84199531 84199531 1 + A G LIHC 84199531 + 84199511 84199551 41 AGCGGGCAGAGGAGAGGAAAAGACAGAGAGAGAGTCAAGAG AGCGGGCAGAGGAGAGGAAAGGACAGAGAGAGAGTCAAGAG Direct Gain 0 0.937114447053013 NA NA prediction 0.874228894106025 Functional Gain - DNAAF1 ENSG00000154099 CDS Human protein_coding chr16:84199531 chr16:84199531 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_40415 0 0 0 0 1 DNAAF1 chr16:84199555 5'GT 84199555 Upstream 25bp 37193 chr16 56602819 56602819 1 + C G OV 56602819 + 56602799 56602839 41 CTGCATCTGCAAAGGAGGCTCAGACAAGTGCAGCTGCTGCC CTGCATCTGCAAAGGAGGCTGAGACAAGTGCAGCTGCTGCC Direct Gain 0 0.937082178515377 NA NA prediction 0.874164357030754 Functional Gain - MT4 ENSG00000102891 CDS Human protein_coding chr16:56602819 chr16:56602819 stopgain 0.992 0 21 hm7G_associated_SNPs_40416 0 0 0 0 1 MT4 chr16:56602753 3'AG 56602753 Downstream 67bp 37194 chr17 66366659 66366659 1 + C G rs144503106 66366659 + 66366639 66366679 41 TCACTGGATTTTGGCAAACTCGTCAAGGTAAGGGGCTCAGC TCACTGGATTTTGGCAAACTGGTCAAGGTAAGGGGCTCAGC Direct Gain 0 0.937042255733068 NA NA prediction 0.874084511466136 Functional Gain - ARSG ENSG00000141337 CDS Human protein_coding chr17:66366659 chr17:66366659 nonsynonymous SNV 0.043 1 21 hm7G_associated_SNPs_40419 0 0 1 0 2 ARSG chr17:66366585 3'AG 66366585 Downstream 75bp 37195 chr17 66366659 66366659 1 + C G rs144503106 66366659 + 66366639 66366679 41 TCACTGGATTTTGGCAAACTCGTCAAGGTAAGGGGCTCAGC TCACTGGATTTTGGCAAACTGGTCAAGGTAAGGGGCTCAGC Direct Gain 0 0.937042255733068 NA NA prediction 0.874084511466136 Functional Gain - ARSG ENSG00000141337 CDS Human protein_coding chr17:66366659 chr17:66366659 nonsynonymous SNV 0.043 1 21 hm7G_associated_SNPs_40419 0 0 1 0 2 ARSG chr17:66366665 5'GT 66366665 Upstream 7bp 37196 chr2 15770153 15770153 1 + T G UCEC 15770153 + 15770133 15770173 41 AACACCTGAACTGTACCATTTCTCAGGTTGAGCCGGATATA AACACCTGAACTGTACCATTGCTCAGGTTGAGCCGGATATA Direct Gain 0 0.937023529929759 NA NA prediction 0.874047059859517 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770153 chr2:15770153 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_40422 0 0 1 0 2 DDX1 chr2:15770114 3'AG 15770114 Downstream 40bp 37197 chr2 15770153 15770153 1 + T G UCEC 15770153 + 15770133 15770173 41 AACACCTGAACTGTACCATTTCTCAGGTTGAGCCGGATATA AACACCTGAACTGTACCATTGCTCAGGTTGAGCCGGATATA Direct Gain 0 0.937023529929759 NA NA prediction 0.874047059859517 Functional Gain - DDX1 ENSG00000079785 CDS Human protein_coding chr2:15770153 chr2:15770153 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_40422 0 0 1 0 2 DDX1 chr2:15770234 5'GT 15770234 Upstream 82bp 37198 chr12 109540689 109540689 1 + T G rs199547586 109540689 + 109540669 109540709 41 TCTACAGACATAGAGGATTTTGTTCATCCTGGCCATGGAGA TCTACAGACATAGAGGATTTGGTTCATCCTGGCCATGGAGA Direct Gain 0 0.937002359430787 NA NA prediction 0.874004718861573 Functional Gain - UNG ENSG00000076248 CDS Human protein_coding chr12:109540689 chr12:109540689 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_40424 0 0 1 0 2 UNG chr12:109540644 3'AG 109540644 Downstream 46bp 37199 chr12 109540689 109540689 1 + T G rs199547586 109540689 + 109540669 109540709 41 TCTACAGACATAGAGGATTTTGTTCATCCTGGCCATGGAGA TCTACAGACATAGAGGATTTGGTTCATCCTGGCCATGGAGA Direct Gain 0 0.937002359430787 NA NA prediction 0.874004718861573 Functional Gain - UNG ENSG00000076248 CDS Human protein_coding chr12:109540689 chr12:109540689 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_40424 0 0 1 0 2 UNG chr12:109540732 5'GT 109540732 Upstream 44bp 37200 chr1 99161256 99161256 1 + T G UCEC 99161256 + 99161236 99161276 41 GATAAAATATCTCAGAGAATTTATAAGGAAGAAAGGGGTAA GATAAAATATCTCAGAGAATGTATAAGGAAGAAAGGGGTAA Direct Gain 0 0.936992286074808 NA NA prediction 0.873984572149616 Functional Gain - SNX7 ENSG00000162627 CDS Human protein_coding chr1:99161256 chr1:99161256 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40425 0 0 0 0 1 SNX7 chr1:99161272 5'GT 99161272 Upstream 17bp 37201 chr21 37713773 37713773 1 + A G STAD 37713773 + 37713753 37713793 41 CCGAGGATTTAGATGAGATAACAGGGAAGAAGGGGTACAAG CCGAGGATTTAGATGAGATAGCAGGGAAGAAGGGGTACAAG Direct Gain 0 0.936981769437206 NA NA prediction 0.873963538874412 Functional Gain - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37713773 chr21:37713773 nonsynonymous SNV 0.975 0 21 hm7G_associated_SNPs_40427 0 0 1 0 1 MORC3 chr21:37713697 3'AG 37713697 Downstream 77bp 37202 chr18 61569046 61569046 1 + A G COAD 61569046 + 61569026 61569066 41 GGTCCTGGTGAATGCTGTCTACTTCAAAGGAAAGTGGAAAA GGTCCTGGTGAATGCTGTCTGCTTCAAAGGAAAGTGGAAAA Direct Gain 0 0.936975674079056 NA NA prediction 0.873951348158112 Functional Gain - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61569046 chr18:61569046 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40429 0 0 0 0 2 SERPINB2 chr18:61568974 3'AG 61568974 Downstream 73bp 37203 chr18 61569046 61569046 1 + A G COAD 61569046 + 61569026 61569066 41 GGTCCTGGTGAATGCTGTCTACTTCAAAGGAAAGTGGAAAA GGTCCTGGTGAATGCTGTCTGCTTCAAAGGAAAGTGGAAAA Direct Gain 0 0.936975674079056 NA NA prediction 0.873951348158112 Functional Gain - SERPINB2 ENSG00000197632;ENSG00000242550 CDS Human other chr18:61569046 chr18:61569046 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40429 0 0 0 0 2 SERPINB2 chr18:61569116 5'GT 61569116 Upstream 71bp 37204 chr2 48030583 48030583 1 + A G ESCA 48030583 + 48030563 48030603 41 TTTACTGTGCCTGGCTAACTATAGTCGAGGGGGTGATGGTC TTTACTGTGCCTGGCTAACTGTAGTCGAGGGGGTGATGGTC Direct Gain 0 0.936971567919065 NA NA prediction 0.873943135838129 Functional Gain - MSH6 ENSG00000116062 CDS Human protein_coding chr2:48030583 chr2:48030583 nonsynonymous SNV 0.995 5 21 hm7G_associated_SNPs_40430 2 0 1 0 1 MSH6 chr2:48030559 3'AG 48030559 Downstream 25bp 37205 chr18 2589284 2589284 1 + T G UCEC 2589284 + 2589264 2589304 41 GAATGAACAGATTGCAAGATTGGAACAAGAAAGAGAAAAAG GAATGAACAGATTGCAAGATGGGAACAAGAAAGAGAAAAAG Direct Gain 0 0.936971285493111 NA NA prediction 0.873942570986221 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2589284 chr18:2589284 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_40431 0 0 1 0 2 NDC80 chr18:2589203 3'AG 2589203 Downstream 82bp 37206 chr18 2589284 2589284 1 + T G UCEC 2589284 + 2589264 2589304 41 GAATGAACAGATTGCAAGATTGGAACAAGAAAGAGAAAAAG GAATGAACAGATTGCAAGATGGGAACAAGAAAGAGAAAAAG Direct Gain 0 0.936971285493111 NA NA prediction 0.873942570986221 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2589284 chr18:2589284 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_40431 0 0 1 0 2 NDC80 chr18:2589309 5'GT 2589309 Upstream 26bp 37207 chr20 47841699 47841699 1 + C G rs371893272 47841699 + 47841679 47841719 41 TCAGTACGATGAAAACCTCTCGTTCCAGGACATGAACCTTT TCAGTACGATGAAAACCTCTGGTTCCAGGACATGAACCTTT Direct Gain 0 0.936963155385695 NA NA prediction 0.873926310771389 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47841699 chr20:47841699 nonsynonymous SNV 0.039 2 21 hm7G_associated_SNPs_40434 0 0 1 0 2 DDX27 chr20:47841650 3'AG 47841650 Downstream 50bp 37208 chr20 47841699 47841699 1 + C G rs371893272 47841699 + 47841679 47841719 41 TCAGTACGATGAAAACCTCTCGTTCCAGGACATGAACCTTT TCAGTACGATGAAAACCTCTGGTTCCAGGACATGAACCTTT Direct Gain 0 0.936963155385695 NA NA prediction 0.873926310771389 Functional Gain - DDX27 ENSG00000124228 CDS Human protein_coding chr20:47841699 chr20:47841699 nonsynonymous SNV 0.039 2 21 hm7G_associated_SNPs_40434 0 0 1 0 2 DDX27 chr20:47841736 5'GT 47841736 Upstream 38bp 37209 chr11 33080616 33080616 1 + T G LGG 33080616 + 33080596 33080636 41 GAATACGAAAGGAAGAAGTTTCAAGAGATTTTGGAGAGGCA GAATACGAAAGGAAGAAGTTGCAAGAGATTTTGGAGAGGCA Direct Gain 0 0.936919902344327 NA NA prediction 0.873839804688654 Functional Gain - TCP11L1 ENSG00000176148 CDS Human protein_coding chr11:33080616 chr11:33080616 nonsynonymous SNV 0.676 2 21 hm7G_associated_SNPs_40436 0 0 0 1 1 TCP11L1 chr11:33080641 5'GT 33080641 Upstream 26bp 37210 chr1 28086088 28086088 1 + A G BLCA 28086088 + 28086068 28086108 41 AGGAATCGCAGATGAGAGCCAAAATGAACCAGATGGAGAAA AGGAATCGCAGATGAGAGCCGAAATGAACCAGATGGAGAAA Direct Gain 0 0.936919398898054 NA NA prediction 0.873838797796108 Functional Gain - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28086088 chr1:28086088 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40437 0 0 1 0 2 FAM76A chr1:28086037 3'AG 28086037 Downstream 52bp 37211 chr1 28086088 28086088 1 + A G BLCA 28086088 + 28086068 28086108 41 AGGAATCGCAGATGAGAGCCAAAATGAACCAGATGGAGAAA AGGAATCGCAGATGAGAGCCGAAATGAACCAGATGGAGAAA Direct Gain 0 0.936919398898054 NA NA prediction 0.873838797796108 Functional Gain - FAM76A ENSG00000009780 CDS Human protein_coding chr1:28086088 chr1:28086088 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40437 0 0 1 0 2 FAM76A chr1:28086138 5'GT 28086138 Upstream 51bp 37212 chr2 85133149 85133149 1 + A G LIHC 85133149 + 85133129 85133169 41 TTGTTTTAAGAAAATGGCAGACAAACCAGACATGGGGGAAA TTGTTTTAAGAAAATGGCAGGCAAACCAGACATGGGGGAAA Direct Gain 0 0.936914493798047 NA NA prediction 0.873828987596094 Functional Gain - TMSB10 ENSG00000034510 CDS Human protein_coding chr2:85133149 chr2:85133149 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40439 0 0 1 0 1 TMSB10 chr2:85133127 3'AG 85133127 Downstream 23bp 37213 chr11 119020878 119020878 1 + A G UCEC 119020878 + 119020858 119020898 41 CGAGTTCGTGGAGCTGTCCTATTCCGTGCGGGAGGGGCCCT CGAGTTCGTGGAGCTGTCCTGTTCCGTGCGGGAGGGGCCCT Direct Gain 0 0.936896980345512 NA NA prediction 0.873793960691024 Functional Gain - ABCG4 ENSG00000172350 CDS Human protein_coding chr11:119020878 chr11:119020878 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40440 0 0 1 0 1 ABCG4 chr11:119020913 5'GT 119020913 Upstream 36bp 37214 chr15 58855790 58855790 1 + A G SKCM 58855790 + 58855770 58855810 41 GCTGATCATGATCAAGTTCAAGTGGGAAAACAGTGCAGTGT GCTGATCATGATCAAGTTCAGGTGGGAAAACAGTGCAGTGT Direct Gain 0 0.936880444470348 NA NA prediction 0.873760888940696 Functional Gain - LIPC ENSG00000166035 CDS Human protein_coding chr15:58855790 chr15:58855790 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_40441 0 0 0 0 1 LIPC chr15:58855704 3'AG 58855704 Downstream 87bp 37215 chr11 112040035 112040035 1 + A G UCEC 112040035 + 112040015 112040055 41 GCCTGATAATAGAAATTGCAAGAGGCCAAGAGAATTGGAGG GCCTGATAATAGAAATTGCAGGAGGCCAAGAGAATTGGAGG Direct Gain 0 0.936878274926978 NA NA prediction 0.873756549853956 Functional Gain - TEX12 ENSG00000150783 CDS Human antisense chr11:112040035 chr11:112040035 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_40442 0 0 0 0 3 TEX12 chr11:112039968 3'AG 112039968 Downstream 68bp 37216 chr11 112040035 112040035 1 + A G UCEC 112040035 + 112040015 112040055 41 GCCTGATAATAGAAATTGCAAGAGGCCAAGAGAATTGGAGG GCCTGATAATAGAAATTGCAGGAGGCCAAGAGAATTGGAGG Direct Gain 0 0.936878274926978 NA NA prediction 0.873756549853956 Functional Gain - TEX12 ENSG00000150783 CDS Human antisense chr11:112040035 chr11:112040035 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_40442 0 0 0 0 3 TEX12 chr11:112039976 3'AG 112039976 Downstream 60bp 37217 chr11 112040035 112040035 1 + A G UCEC 112040035 + 112040015 112040055 41 GCCTGATAATAGAAATTGCAAGAGGCCAAGAGAATTGGAGG GCCTGATAATAGAAATTGCAGGAGGCCAAGAGAATTGGAGG Direct Gain 0 0.936878274926978 NA NA prediction 0.873756549853956 Functional Gain - TEX12 ENSG00000150783 CDS Human protein_coding chr11:112040035 chr11:112040035 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_40442 0 0 0 0 3 TEX12 chr11:112040054 5'GT 112040054 Upstream 20bp 37218 chr12 109541289 109541289 1 + C G STAD 109541289 + 109541269 109541309 41 TCGTGCCCATCAAGCCAACTCTCATAAGGAGCGAGGCTGGG TCGTGCCCATCAAGCCAACTGTCATAAGGAGCGAGGCTGGG Direct Gain 0 0.936871873044843 NA NA prediction 0.873743746089686 Functional Gain - UNG ENSG00000076248 CDS Human protein_coding chr12:109541289 chr12:109541289 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_40443 0 0 1 0 1 UNG chr12:109541238 3'AG 109541238 Downstream 52bp 37219 chr4 77941776 77941776 1 + T G KIRC 77941776 + 77941756 77941796 41 TTGTACCGACGCTGTAAGCTTGAAGAGATGGGGTTCAAGGA TTGTACCGACGCTGTAAGCTGGAAGAGATGGGGTTCAAGGA Direct Gain 0 0.936850077498604 NA NA prediction 0.873700154997209 Functional Gain - SEPT11 ENSG00000138758 CDS Human protein_coding chr4:77941776 chr4:77941776 synonymous SNV . 0 21 hm7G_associated_SNPs_40447 0 0 1 0 1 SEPT11 chr4:77941823 5'GT 77941823 Upstream 48bp 37220 chrX 15800652 15800652 1 + A G rs150953730 15800652 + 15800632 15800672 41 TTCACTTCCGAAGGGGAGAAAGAGAAAAGAATGGTGGACAA TTCACTTCCGAAGGGGAGAAGGAGAAAAGAATGGTGGACAA Direct Gain 0 0.936830417623263 NA NA prediction 0.873660835246526 Functional Gain - CA5B ENSG00000169239 CDS Human protein_coding chrX:15800652 chrX:15800652 synonymous SNV . 0 21 hm7G_associated_SNPs_40449 0 0 0 0 1 CA5B chrX:15800608 3'AG 15800608 Downstream 45bp 37221 chr10 118318738 118318738 1 + A G LUSC 118318738 + 118318718 118318758 41 CTGATAGATATCCTGGGAAAACAAATGATGTGGGCCAGAAA CTGATAGATATCCTGGGAAAGCAAATGATGTGGGCCAGAAA Direct Gain 0 0.936818401907919 NA NA prediction 0.873636803815838 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318738 chr10:118318738 nonsynonymous SNV 0.017 3 21 hm7G_associated_SNPs_40450 0 0 0 0 2 PNLIP chr10:118318666 3'AG 118318666 Downstream 73bp 37222 chr10 118318738 118318738 1 + A G LUSC 118318738 + 118318718 118318758 41 CTGATAGATATCCTGGGAAAACAAATGATGTGGGCCAGAAA CTGATAGATATCCTGGGAAAGCAAATGATGTGGGCCAGAAA Direct Gain 0 0.936818401907919 NA NA prediction 0.873636803815838 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118318738 chr10:118318738 nonsynonymous SNV 0.017 3 21 hm7G_associated_SNPs_40450 0 0 0 0 2 PNLIP chr10:118318795 5'GT 118318795 Upstream 58bp 37223 chr2 121043489 121043489 1 + A G STAD 121043489 + 121043469 121043509 41 CTACCAAAGCTGACAGTTATAGAAAGAAAGTGGTTCTTGAT CTACCAAAGCTGACAGTTATGGAAAGAAAGTGGTTCTTGAT Direct Gain 0 0.93681323152785 NA NA prediction 0.873626463055701 Functional Gain - RALB ENSG00000144118 CDS Human protein_coding chr2:121043489 chr2:121043489 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40452 0 0 1 0 1 RALB chr2:121043450 3'AG 121043450 Downstream 40bp 37224 chr8 124449523 124449523 1 + A G UCEC 124449523 + 124449503 124449543 41 GATCTCACATGAAAGACTCCAGTGGGAATTGGAGAGAGCCT GATCTCACATGAAAGACTCCGGTGGGAATTGGAGAGAGCCT Direct Gain 0 0.936783248838215 NA NA prediction 0.87356649767643 Functional Gain - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124449523 chr8:124449523 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_40455 0 0 1 0 2 WDYHV1 chr8:124449450 3'AG 124449450 Downstream 74bp 37225 chr8 124449523 124449523 1 + A G UCEC 124449523 + 124449503 124449543 41 GATCTCACATGAAAGACTCCAGTGGGAATTGGAGAGAGCCT GATCTCACATGAAAGACTCCGGTGGGAATTGGAGAGAGCCT Direct Gain 0 0.936783248838215 NA NA prediction 0.87356649767643 Functional Gain - WDYHV1 ENSG00000156795 CDS Human protein_coding chr8:124449523 chr8:124449523 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_40455 0 0 1 0 2 WDYHV1 chr8:124449574 5'GT 124449574 Upstream 52bp 37226 chr2 86716699 86716699 1 + A G SKCM 86716699 + 86716679 86716719 41 AACTCACAATAAAGCGATTTATTGAAGGAAAAGAGAAGCCA AACTCACAATAAAGCGATTTGTTGAAGGAAAAGAGAAGCCA Direct Gain 0 0.936781694044545 NA NA prediction 0.87356338808909 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86716699 chr2:86716699 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40456 0 0 1 0 2 KDM3A chr2:86716643 3'AG 86716643 Downstream 57bp 37227 chr2 86716699 86716699 1 + A G SKCM 86716699 + 86716679 86716719 41 AACTCACAATAAAGCGATTTATTGAAGGAAAAGAGAAGCCA AACTCACAATAAAGCGATTTGTTGAAGGAAAAGAGAAGCCA Direct Gain 0 0.936781694044545 NA NA prediction 0.87356338808909 Functional Gain - KDM3A ENSG00000115548 CDS Human protein_coding chr2:86716699 chr2:86716699 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40456 0 0 1 0 2 KDM3A chr2:86716782 5'GT 86716782 Upstream 84bp 37228 chr1 92442603 92442603 1 + A G UCEC 92442603 + 92442583 92442623 41 GAATTGTTCTGTTGTAGGTTACAAAAGGTGTGAAGAGGAAA GAATTGTTCTGTTGTAGGTTGCAAAAGGTGTGAAGAGGAAA Direct Gain 0 0.93674636248105 NA NA prediction 0.873492724962101 Functional Gain - BRDT ENSG00000137948 CDS Human protein_coding chr1:92442603 chr1:92442603 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_40457 0 0 0 0 1 BRDT chr1:92442600 3'AG 92442600 Downstream 4bp 37229 chr17 71196744 71196744 1 + C G BLCA 71196744 + 71196724 71196764 41 AATGGGATCACCAACCTGCTCATGTACGTGAAGAGCATGAA AATGGGATCACCAACCTGCTGATGTACGTGAAGAGCATGAA Direct Gain 0 0.93674032393964 NA NA prediction 0.873480647879281 Functional Gain - COG1 ENSG00000166685 CDS Human protein_coding chr17:71196744 chr17:71196744 synonymous SNV . 0 21 hm7G_associated_SNPs_40458 0 0 0 0 1 COG1 chr17:71196705 3'AG 71196705 Downstream 40bp 37230 chr8 124206298 124206298 1 + A G UCEC 124206298 + 124206278 124206318 41 GAGTGTGGAAGGAGAGATATACTGTGCCAAGTCAGGCAGGA GAGTGTGGAAGGAGAGATATGCTGTGCCAAGTCAGGCAGGA Direct Gain 0 0.936728619221928 NA NA prediction 0.873457238443856 Functional Gain - FAM83A ENSG00000147689 CDS Human protein_coding chr8:124206298 chr8:124206298 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_40459 0 0 1 0 2 FAM83A chr8:124206264 3'AG 124206264 Downstream 35bp 37231 chr8 124206298 124206298 1 + A G UCEC 124206298 + 124206278 124206318 41 GAGTGTGGAAGGAGAGATATACTGTGCCAAGTCAGGCAGGA GAGTGTGGAAGGAGAGATATGCTGTGCCAAGTCAGGCAGGA Direct Gain 0 0.936728619221928 NA NA prediction 0.873457238443856 Functional Gain - FAM83A ENSG00000147689 CDS Human protein_coding chr8:124206298 chr8:124206298 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_40459 0 0 1 0 2 FAM83A chr8:124206388 5'GT 124206388 Upstream 91bp 37232 chr18 12955468 12955468 1 + A G STAD 12955468 + 12955448 12955488 41 TTTTGATTCCCCAGACACATAGTGGATCTGTATGGCGTGTG TTTTGATTCCCCAGACACATGGTGGATCTGTATGGCGTGTG Direct Gain 0 0.93667290436945 NA NA prediction 0.8733458087389 Functional Gain - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12955468 chr18:12955468 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_40462 0 0 1 0 1 SEH1L chr18:12955462 3'AG 12955462 Downstream 7bp 37233 chr19 8548046 8548046 1 + C G LUAD 8548046 + 8548026 8548066 41 TTCCTGATTTCCTTAGAAATCCTAAGTAATGCACTGAAGAG TTCCTGATTTCCTTAGAAATGCTAAGTAATGCACTGAAGAG Direct Gain 0 0.936672222045768 NA NA prediction 0.873344444091536 Functional Gain - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8548046 chr19:8548046 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40463 0 0 1 0 2 HNRNPM chr19:8548042 3'AG 8548042 Downstream 5bp 37234 chr19 8548046 8548046 1 + C G LUAD 8548046 + 8548026 8548066 41 TTCCTGATTTCCTTAGAAATCCTAAGTAATGCACTGAAGAG TTCCTGATTTCCTTAGAAATGCTAAGTAATGCACTGAAGAG Direct Gain 0 0.936672222045768 NA NA prediction 0.873344444091536 Functional Gain - HNRNPM ENSG00000099783 CDS Human protein_coding chr19:8548046 chr19:8548046 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40463 0 0 1 0 2 HNRNPM chr19:8548095 5'GT 8548095 Upstream 50bp 37235 chr3 186505664 186505664 1 + A G COAD 186505664 + 186505644 186505684 41 CTACCAATCGTGAAAACTATATTCACAGGTGAGAAGCCAGC CTACCAATCGTGAAAACTATGTTCACAGGTGAGAAGCCAGC Direct Gain 0 0.936650880866933 NA NA prediction 0.873301761733866 Functional Gain - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505664 chr3:186505664 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40465 0 0 1 0 2 EIF4A2 chr3:186505592 3'AG 186505592 Downstream 73bp 37236 chr3 186505664 186505664 1 + A G COAD 186505664 + 186505644 186505684 41 CTACCAATCGTGAAAACTATATTCACAGGTGAGAAGCCAGC CTACCAATCGTGAAAACTATGTTCACAGGTGAGAAGCCAGC Direct Gain 0 0.936650880866933 NA NA prediction 0.873301761733866 Functional Gain - EIF4A2 ENSG00000156976 CDS Human protein_coding chr3:186505664 chr3:186505664 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40465 0 0 1 0 2 EIF4A2 chr3:186505671 5'GT 186505671 Upstream 8bp 37237 chrX 47072471 47072471 1 + A G UCEC 47072471 + 47072451 47072491 41 CCTTGTGTGTCTGGAGCTGTACAAGGTTGTGCAGGGGCACC CCTTGTGTGTCTGGAGCTGTGCAAGGTTGTGCAGGGGCACC Direct Gain 0 0.936646566774876 NA NA prediction 0.873293133549752 Functional Gain - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47072471 chrX:47072471 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_40466 0 0 1 0 1 UBA1 chrX:47072389 3'AG 47072389 Downstream 83bp 37238 chr10 119036742 119036742 1 + C G CESC 119036742 + 119036722 119036762 41 AGAATAATATCCAGTCATATCCGATAGGTGAAGATGAAGAA AGAATAATATCCAGTCATATGCGATAGGTGAAGATGAAGAA Direct Gain 0 0.936565761733098 NA NA prediction 0.873131523466197 Functional Gain - SLC18A2 ENSG00000165646 CDS Human protein_coding chr10:119036742 chr10:119036742 nonsynonymous SNV 0.889 1 21 hm7G_associated_SNPs_40469 0 0 0 0 1 SLC18A2 chr10:119036673 3'AG 119036673 Downstream 70bp 37239 chr5 40959662 40959662 1 + C G LUSC 40959662 + 40959642 40959682 41 TCCCAGTGGGGGTGGGAGATCCTGCGTTGGAGAAACGACAG TCCCAGTGGGGGTGGGAGATGCTGCGTTGGAGAAACGACAG Direct Gain 0 0.936524456003836 NA NA prediction 0.873048912007673 Functional Gain - C7 ENSG00000112936 CDS Human protein_coding chr5:40959662 chr5:40959662 nonsynonymous SNV 0.111 0 21 hm7G_associated_SNPs_40470 0 0 0 0 1 C7 chr5:40959722 5'GT 40959722 Upstream 61bp 37240 chr18 28926114 28926114 1 + A G LIHC 28926114 + 28926094 28926134 41 GAAATTCTATGAGGGAATGTAGAGAAGGAGGTCTGAATATG GAAATTCTATGAGGGAATGTGGAGAAGGAGGTCTGAATATG Direct Gain 0 0.936489531481999 NA NA prediction 0.872979062963999 Functional Gain - DSG1 ENSG00000134760 CDS Human protein_coding chr18:28926114 chr18:28926114 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40473 0 0 0 0 1 DSG1 chr18:28926161 5'GT 28926161 Upstream 48bp 37241 chr12 7070023 7070023 1 + A G LIHC 7070023 + 7070003 7070043 41 AAGAACAAGAGGGAGGAGAAAGTGAAGAAGCAGCGGTCAGC AAGAACAAGAGGGAGGAGAAGGTGAAGAAGCAGCGGTCAGC Direct Gain 0 0.936455870570603 NA NA prediction 0.872911741141206 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7070023 chr12:7070023 nonsynonymous SNV 0.977 1 21 hm7G_associated_SNPs_40476 0 0 0 0 2 PTPN6 chr12:7069969 3'AG 7069969 Downstream 55bp 37242 chr12 7070023 7070023 1 + A G LIHC 7070023 + 7070003 7070043 41 AAGAACAAGAGGGAGGAGAAAGTGAAGAAGCAGCGGTCAGC AAGAACAAGAGGGAGGAGAAGGTGAAGAAGCAGCGGTCAGC Direct Gain 0 0.936455870570603 NA NA prediction 0.872911741141206 Functional Gain - PTPN6 ENSG00000111679 CDS Human protein_coding chr12:7070023 chr12:7070023 nonsynonymous SNV 0.977 1 21 hm7G_associated_SNPs_40476 0 0 0 0 2 PTPN6 chr12:7070108 5'GT 7070108 Upstream 86bp 37243 chr11 124501219 124501219 1 + A G UCEC 124501219 + 124501199 124501239 41 AAACCTGGAGATGGGCAGCTACCTGAGGGGCTGCCGGAGAA AAACCTGGAGATGGGCAGCTGCCTGAGGGGCTGCCGGAGAA Direct Gain 0 0.93644488769019 NA NA prediction 0.87288977538038 Functional Gain - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124501219 chr11:124501219 synonymous SNV . 0 21 hm7G_associated_SNPs_40477 0 0 1 0 3 TBRG1 chr11:124501136 3'AG 124501136 Downstream 84bp 37244 chr11 124501219 124501219 1 + A G UCEC 124501219 + 124501199 124501239 41 AAACCTGGAGATGGGCAGCTACCTGAGGGGCTGCCGGAGAA AAACCTGGAGATGGGCAGCTGCCTGAGGGGCTGCCGGAGAA Direct Gain 0 0.93644488769019 NA NA prediction 0.87288977538038 Functional Gain - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124501219 chr11:124501219 synonymous SNV . 0 21 hm7G_associated_SNPs_40477 0 0 1 0 3 TBRG1 chr11:124501171 3'AG 124501171 Downstream 49bp 37245 chr11 124501219 124501219 1 + A G UCEC 124501219 + 124501199 124501239 41 AAACCTGGAGATGGGCAGCTACCTGAGGGGCTGCCGGAGAA AAACCTGGAGATGGGCAGCTGCCTGAGGGGCTGCCGGAGAA Direct Gain 0 0.93644488769019 NA NA prediction 0.87288977538038 Functional Gain - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124501219 chr11:124501219 synonymous SNV . 0 21 hm7G_associated_SNPs_40477 0 0 1 0 3 TBRG1 chr11:124501313 5'GT 124501313 Upstream 95bp 37246 chrX 46696579 46696579 1 + C G BRCA 46696579 + 46696559 46696599 41 ACGGAAGGCTGACAAGGAGTCGCGGCCCGAGAACGAGGAGG ACGGAAGGCTGACAAGGAGTGGCGGCCCGAGAACGAGGAGG Direct Gain 0 0.936410151967554 NA NA prediction 0.872820303935107 Functional Gain - RP2 ENSG00000102218 CDS Human protein_coding chrX:46696579 chrX:46696579 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_40479 0 0 0 0 1 RP2 chrX:46696637 5'GT 46696637 Upstream 59bp 37247 chr1 241752125 241752125 1 + A G LUSC 241752125 + 241752105 241752145 41 AGACCTATCCATGTACAATTACATAGAGGTGAGTGAGAAGG AGACCTATCCATGTACAATTGCATAGAGGTGAGTGAGAAGG Direct Gain 0 0.936389998763753 NA NA prediction 0.872779997527505 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241752125 chr1:241752125 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_40480 0 0 0 0 2 KMO chr1:241752050 3'AG 241752050 Downstream 76bp 37248 chr1 241752125 241752125 1 + A G LUSC 241752125 + 241752105 241752145 41 AGACCTATCCATGTACAATTACATAGAGGTGAGTGAGAAGG AGACCTATCCATGTACAATTGCATAGAGGTGAGTGAGAAGG Direct Gain 0 0.936389998763753 NA NA prediction 0.872779997527505 Functional Gain - KMO ENSG00000117009 CDS Human protein_coding chr1:241752125 chr1:241752125 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_40480 0 0 0 0 2 KMO chr1:241752132 5'GT 241752132 Upstream 8bp 37249 chr2 95542358 95542358 1 + A G LUSC 95542358 + 95542338 95542378 41 GCACTGCGAGAGAAGCTTCTAGAAGCGGAGCAGTCCCTGCG GCACTGCGAGAGAAGCTTCTGGAAGCGGAGCAGTCCCTGCG Direct Gain 0 0.936385769668771 NA NA prediction 0.872771539337542 Functional Gain - TEKT4 ENSG00000163060 CDS Human protein_coding chr2:95542358 chr2:95542358 synonymous SNV . 0 21 hm7G_associated_SNPs_40481 0 0 0 0 1 TEKT4 chr2:95542298 3'AG 95542298 Downstream 61bp 37250 chr8 6605309 6605309 1 + A G rs140609804 6605309 + 6605289 6605329 41 ACGGTGGTTTATGAAGGGAAAGACGATGGAGGGCAGCGAAG ACGGTGGTTTATGAAGGGAAGGACGATGGAGGGCAGCGAAG Direct Gain 0 0.936379930900508 NA NA prediction 0.872759861801016 Functional Gain - AGPAT5 ENSG00000155189 CDS Human protein_coding chr8:6605309 chr8:6605309 synonymous SNV . 0 21 hm7G_associated_SNPs_40483 0 0 1 0 1 AGPAT5 chr8:6605349 5'GT 6605349 Upstream 41bp 37251 chr17 14110208 14110208 1 + A G UCEC 14110208 + 14110188 14110228 41 CTGGGGCCTCCGTGAAGACTACTCCCGGGGCGGCTACTGCA CTGGGGCCTCCGTGAAGACTGCTCCCGGGGCGGCTACTGCA Direct Gain 0 0.936354246566711 NA NA prediction 0.872708493133421 Functional Gain - COX10 ENSG00000006695 CDS Human protein_coding chr17:14110208 chr17:14110208 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_40485 0 0 1 0 1 COX10 chr17:14110127 3'AG 14110127 Downstream 82bp 37252 chr2 232576664 232576664 1 + A G TGCT 232576664 + 232576644 232576684 41 AGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAG AGAAGAGGAAGAAGGTGGGGGGGAAGAGGAGGAGGAAGAAG Direct Gain 0 0.936346760294703 NA NA prediction 0.872693520589407 Functional Gain - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576664 chr2:232576664 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_40486 0 0 1 0 3 PTMA chr2:232576597 3'AG 232576597 Downstream 68bp 37253 chr2 232576664 232576664 1 + A G TGCT 232576664 + 232576644 232576684 41 AGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAG AGAAGAGGAAGAAGGTGGGGGGGAAGAGGAGGAGGAAGAAG Direct Gain 0 0.936346760294703 NA NA prediction 0.872693520589407 Functional Gain - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576664 chr2:232576664 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_40486 0 0 1 0 3 PTMA chr2:232576600 3'AG 232576600 Downstream 65bp 37254 chr2 232576664 232576664 1 + A G TGCT 232576664 + 232576644 232576684 41 AGAAGAGGAAGAAGGTGGGGAGGAAGAGGAGGAGGAAGAAG AGAAGAGGAAGAAGGTGGGGGGGAAGAGGAGGAGGAAGAAG Direct Gain 0 0.936346760294703 NA NA prediction 0.872693520589407 Functional Gain - PTMA ENSG00000187514 CDS Human protein_coding chr2:232576664 chr2:232576664 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_40486 0 0 1 0 3 PTMA chr2:232576693 5'GT 232576693 Upstream 30bp 37255 chr6 160198427 160198427 1 + C G rs146437481 160198427 + 160198407 160198447 41 AGCACGGATAGTTTCCTGGTCCCAAGTGGGTGTGGAGCCTT AGCACGGATAGTTTCCTGGTGCCAAGTGGGTGTGGAGCCTT Direct Gain 0 0.936326930129269 NA NA prediction 0.872653860258539 Functional Gain - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160198427 chr6:160198427 nonsynonymous SNV 0.852 4 21 hm7G_associated_SNPs_40487 0 0 1 0 2 ACAT2 chr6:160198334 3'AG 160198334 Downstream 94bp 37256 chr6 160198427 160198427 1 + C G rs146437481 160198427 + 160198407 160198447 41 AGCACGGATAGTTTCCTGGTCCCAAGTGGGTGTGGAGCCTT AGCACGGATAGTTTCCTGGTGCCAAGTGGGTGTGGAGCCTT Direct Gain 0 0.936326930129269 NA NA prediction 0.872653860258539 Functional Gain - ACAT2 ENSG00000120437 CDS Human protein_coding chr6:160198427 chr6:160198427 nonsynonymous SNV 0.852 4 21 hm7G_associated_SNPs_40487 0 0 1 0 2 ACAT2 chr6:160198488 5'GT 160198488 Upstream 62bp 37257 chr1 19582494 19582494 1 + A G READ 19582494 + 19582474 19582514 41 TTTCATCTTCTCTGTGGCCAACATGAGGAACAGCAAGCTGA TTTCATCTTCTCTGTGGCCAGCATGAGGAACAGCAAGCTGA Direct Gain 0 0.936280149763909 NA NA prediction 0.872560299527818 Functional Gain - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19582494 chr1:19582494 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40488 0 0 1 0 2 MRTO4 chr1:19582442 3'AG 19582442 Downstream 53bp 37258 chr1 19582494 19582494 1 + A G READ 19582494 + 19582474 19582514 41 TTTCATCTTCTCTGTGGCCAACATGAGGAACAGCAAGCTGA TTTCATCTTCTCTGTGGCCAGCATGAGGAACAGCAAGCTGA Direct Gain 0 0.936280149763909 NA NA prediction 0.872560299527818 Functional Gain - MRTO4 ENSG00000053372 CDS Human protein_coding chr1:19582494 chr1:19582494 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40488 0 0 1 0 2 MRTO4 chr1:19582545 5'GT 19582545 Upstream 52bp 37259 chr16 56976111 56976111 1 + C G rs35721729 56976111 + 56976091 56976131 41 TCCCAAATGATGGTCCTCCTCCTGACGTTGTAAATCAGGAC TCCCAAATGATGGTCCTCCTGCTGACGTTGTAAATCAGGAC Direct Gain 0 0.936270735449646 NA NA prediction 0.872541470899293 Functional Gain - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56976111 chr16:56976111 nonsynonymous SNV 0.288 0 21 hm7G_associated_SNPs_40489 0 0 1 0 2 HERPUD1 chr16:56976044 3'AG 56976044 Downstream 68bp 37260 chr16 56976111 56976111 1 + C G rs35721729 56976111 + 56976091 56976131 41 TCCCAAATGATGGTCCTCCTCCTGACGTTGTAAATCAGGAC TCCCAAATGATGGTCCTCCTGCTGACGTTGTAAATCAGGAC Direct Gain 0 0.936270735449646 NA NA prediction 0.872541470899293 Functional Gain - HERPUD1 ENSG00000051108 CDS Human protein_coding chr16:56976111 chr16:56976111 nonsynonymous SNV 0.288 0 21 hm7G_associated_SNPs_40489 0 0 1 0 2 HERPUD1 chr16:56976149 5'GT 56976149 Upstream 39bp 37261 chrX 107310217 107310217 1 + C G OV 107310217 + 107310197 107310237 41 CCATCGGGCAATTTAAAGATCGAATTACAGGGTCCAACGAT CCATCGGGCAATTTAAAGATGGAATTACAGGGTCCAACGAT Direct Gain 0 0.936184022700567 NA NA prediction 0.872368045401134 Functional Gain - VSIG1 ENSG00000101842 CDS Human protein_coding chrX:107310217 chrX:107310217 nonsynonymous SNV 0.794 4 21 hm7G_associated_SNPs_40493 0 0 0 0 1 VSIG1 chrX:107310166 3'AG 107310166 Downstream 52bp 37262 chr13 41639164 41639164 1 + C G BLCA 41639164 + 41639144 41639184 41 TTTTCAAGAGTGTTGAATTTCATGAAAGAGGAAAGAATCAT TTTTCAAGAGTGTTGAATTTGATGAAAGAGGAAAGAATCAT Direct Gain 0 0.936177029982979 NA NA prediction 0.872354059965958 Functional Gain - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41639164 chr13:41639164 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40494 0 0 1 0 1 WBP4 chr13:41639214 5'GT 41639214 Upstream 51bp 37263 chr22 18063916 18063916 1 + A G UCEC 18063916 + 18063896 18063936 41 CCAGCATGGGAAAGCCATGTACAAAGGAATGTAGGTGCTGG CCAGCATGGGAAAGCCATGTGCAAAGGAATGTAGGTGCTGG Direct Gain 0 0.936139939930137 NA NA prediction 0.872279879860274 Functional Gain - SLC25A18 ENSG00000182902 CDS Human protein_coding chr22:18063916 chr22:18063916 nonsynonymous SNV 0.715 5 21 hm7G_associated_SNPs_40496 0 0 0 0 1 SLC25A18 chr22:18063925 5'GT 18063925 Upstream 10bp 37264 chr6 122741289 122741289 1 + T G COAD 122741289 + 122741269 122741309 41 CTGGTTTTCAGGCCTCTACTTCTAAACACTAATGGAGCCCA CTGGTTTTCAGGCCTCTACTGCTAAACACTAATGGAGCCCA Direct Gain 0 0.936135722276857 NA NA prediction 0.872271444553715 Functional Gain - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122741289 chr6:122741289 synonymous SNV . 0 21 hm7G_associated_SNPs_40497 0 0 0 0 2 HSF2 chr6:122741280 3'AG 122741280 Downstream 10bp 37265 chr6 122741289 122741289 1 + T G COAD 122741289 + 122741269 122741309 41 CTGGTTTTCAGGCCTCTACTTCTAAACACTAATGGAGCCCA CTGGTTTTCAGGCCTCTACTGCTAAACACTAATGGAGCCCA Direct Gain 0 0.936135722276857 NA NA prediction 0.872271444553715 Functional Gain - HSF2 ENSG00000025156 CDS Human protein_coding chr6:122741289 chr6:122741289 synonymous SNV . 0 21 hm7G_associated_SNPs_40497 0 0 0 0 2 HSF2 chr6:122741367 5'GT 122741367 Upstream 79bp 37266 chr1 16043265 16043265 1 + C G ESCA 16043265 + 16043245 16043285 41 TTTACTCGGAGAGAGGCCATCAAGCAGATCGAGGTGCTGCA TTTACTCGGAGAGAGGCCATGAAGCAGATCGAGGTGCTGCA Direct Gain 0 0.936116047472044 NA NA prediction 0.872232094944087 Functional Gain - PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16043265 chr1:16043265 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_40499 0 0 1 0 2 PLEKHM2 chr1:16043202 3'AG 16043202 Downstream 64bp 37267 chr1 16043265 16043265 1 + C G ESCA 16043265 + 16043245 16043285 41 TTTACTCGGAGAGAGGCCATCAAGCAGATCGAGGTGCTGCA TTTACTCGGAGAGAGGCCATGAAGCAGATCGAGGTGCTGCA Direct Gain 0 0.936116047472044 NA NA prediction 0.872232094944087 Functional Gain - PLEKHM2 ENSG00000116786 CDS Human protein_coding chr1:16043265 chr1:16043265 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_40499 0 0 1 0 2 PLEKHM2 chr1:16043311 5'GT 16043311 Upstream 47bp 37268 chr16 10841073 10841073 1 + T G LUSC 10841073 + 10841053 10841093 41 TTGTCTGGGAAAGGCGGTGTTGGGAAAAGCACATTCAGCGC TTGTCTGGGAAAGGCGGTGTGGGGAAAAGCACATTCAGCGC Direct Gain 0 0.936087416235207 NA NA prediction 0.872174832470413 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10841073 chr16:10841073 synonymous SNV . 0 21 hm7G_associated_SNPs_40500 0 0 1 0 2 NUBP1 chr16:10841000 3'AG 10841000 Downstream 74bp 37269 chr16 10841073 10841073 1 + T G LUSC 10841073 + 10841053 10841093 41 TTGTCTGGGAAAGGCGGTGTTGGGAAAAGCACATTCAGCGC TTGTCTGGGAAAGGCGGTGTGGGGAAAAGCACATTCAGCGC Direct Gain 0 0.936087416235207 NA NA prediction 0.872174832470413 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10841073 chr16:10841073 synonymous SNV . 0 21 hm7G_associated_SNPs_40500 0 0 1 0 2 NUBP1 chr16:10841133 5'GT 10841133 Upstream 61bp 37270 chr2 232577169 232577169 1 + A G UCEC 232577169 + 232577149 232577189 41 CCAGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGA CCAGGTGAGGAAGAGGATGGGGATGAAGATGAGGAAGCTGA Direct Gain 0 0.936011570183978 NA NA prediction 0.872023140367956 Functional Gain - PTMA ENSG00000187514 CDS Human protein_coding chr2:232577169 chr2:232577169 synonymous SNV . 0 21 hm7G_associated_SNPs_40506 0 0 1 0 2 PTMA chr2:232577153 3'AG 232577153 Downstream 17bp 37271 chr2 232577169 232577169 1 + A G UCEC 232577169 + 232577149 232577189 41 CCAGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGA CCAGGTGAGGAAGAGGATGGGGATGAAGATGAGGAAGCTGA Direct Gain 0 0.936011570183978 NA NA prediction 0.872023140367956 Functional Gain - PTMA ENSG00000187514 CDS Human protein_coding chr2:232577169 chr2:232577169 synonymous SNV . 0 21 hm7G_associated_SNPs_40506 0 0 1 0 2 PTMA chr2:232577226 5'GT 232577226 Upstream 58bp 37272 chr7 56066709 56066709 1 + A G LUSC 56066709 + 56066689 56066729 41 TCTTGTTTTCAGTTCCACTTATTCAGGAAATGGAATCCAGA TCTTGTTTTCAGTTCCACTTGTTCAGGAAATGGAATCCAGA Direct Gain 0 0.935980000206266 NA NA prediction 0.871960000412532 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56066709 chr7:56066709 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40508 0 0 1 0 1 NIPSNAP2 chr7:56066701 3'AG 56066701 Downstream 9bp 37273 chr1 117618867 117618867 1 + C G KIRP 117618867 + 117618847 117618887 41 CAGAAGTTGATCAAACAAATCCAGGAGCTGGAGGAAGTACT CAGAAGTTGATCAAACAAATGCAGGAGCTGGAGGAAGTACT Direct Gain 0 0.935918321465542 NA NA prediction 0.871836642931084 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117618867 chr1:117618867 nonsynonymous SNV 0.329 3 21 hm7G_associated_SNPs_40509 0 0 1 0 2 TTF2 chr1:117618802 3'AG 117618802 Downstream 66bp 37274 chr1 117618867 117618867 1 + C G KIRP 117618867 + 117618847 117618887 41 CAGAAGTTGATCAAACAAATCCAGGAGCTGGAGGAAGTACT CAGAAGTTGATCAAACAAATGCAGGAGCTGGAGGAAGTACT Direct Gain 0 0.935918321465542 NA NA prediction 0.871836642931084 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117618867 chr1:117618867 nonsynonymous SNV 0.329 3 21 hm7G_associated_SNPs_40509 0 0 1 0 2 TTF2 chr1:117618916 5'GT 117618916 Upstream 50bp 37275 chr11 69458614 69458614 1 + C G MESO 69458614 + 69458594 69458634 41 TCGCAGCAAATGGAGCTGCTCCTGGTGAACAAGCTCAAGTG TCGCAGCAAATGGAGCTGCTGCTGGTGAACAAGCTCAAGTG Direct Gain 0 0.935899442183447 NA NA prediction 0.871798884366894 Functional Gain - CCND1 ENSG00000110092 CDS Human protein_coding chr11:69458614 chr11:69458614 synonymous SNV . 0 21 hm7G_associated_SNPs_40510 0 0 1 0 1 CCND1 chr11:69458600 3'AG 69458600 Downstream 15bp 37276 chr20 25276269 25276269 1 + A G PRAD 25276269 + 25276249 25276289 41 GTTTGCAGACTATGAAGCCTACATGCAGTGCCAGGCACAGG GTTTGCAGACTATGAAGCCTGCATGCAGTGCCAGGCACAGG Direct Gain 0 0.935847795095526 NA NA prediction 0.871695590191052 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25276269 chr20:25276269 nonsynonymous SNV 0.043 4 21 hm7G_associated_SNPs_40511 0 0 1 0 2 PYGB chr20:25276240 3'AG 25276240 Downstream 30bp 37277 chr20 25276269 25276269 1 + A G PRAD 25276269 + 25276249 25276289 41 GTTTGCAGACTATGAAGCCTACATGCAGTGCCAGGCACAGG GTTTGCAGACTATGAAGCCTGCATGCAGTGCCAGGCACAGG Direct Gain 0 0.935847795095526 NA NA prediction 0.871695590191052 Functional Gain - PYGB ENSG00000100994 CDS Human protein_coding chr20:25276269 chr20:25276269 nonsynonymous SNV 0.043 4 21 hm7G_associated_SNPs_40511 0 0 1 0 2 PYGB chr20:25276306 5'GT 25276306 Upstream 38bp 37278 chr8 109462150 109462150 1 + A G HNSC 109462150 + 109462130 109462170 41 TAATTAATGAATATGCTTCTAAGCTGGGAGATGATAGTAAG TAATTAATGAATATGCTTCTGAGCTGGGAGATGATAGTAAG Direct Gain 0 0.935817162082855 NA NA prediction 0.871634324165711 Functional Gain - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109462150 chr8:109462150 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40513 0 0 1 0 2 EMC2 chr8:109462052 3'AG 109462052 Downstream 99bp 37279 chr8 109462150 109462150 1 + A G HNSC 109462150 + 109462130 109462170 41 TAATTAATGAATATGCTTCTAAGCTGGGAGATGATAGTAAG TAATTAATGAATATGCTTCTGAGCTGGGAGATGATAGTAAG Direct Gain 0 0.935817162082855 NA NA prediction 0.871634324165711 Functional Gain - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109462150 chr8:109462150 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40513 0 0 1 0 2 EMC2 chr8:109462165 5'GT 109462165 Upstream 16bp 37280 chr4 166215563 166215563 1 + C G LUSC 166215563 + 166215543 166215583 41 GAATTTCTCAATCTTGGCATCGAACAAGTGTGCAGCTTAAT GAATTTCTCAATCTTGGCATGGAACAAGTGTGCAGCTTAAT Direct Gain 0 0.935816528875098 NA NA prediction 0.871633057750197 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166215563 chr4:166215563 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_40514 0 0 1 0 2 KLHL2 chr4:166215511 3'AG 166215511 Downstream 53bp 37281 chr4 166215563 166215563 1 + C G LUSC 166215563 + 166215543 166215583 41 GAATTTCTCAATCTTGGCATCGAACAAGTGTGCAGCTTAAT GAATTTCTCAATCTTGGCATGGAACAAGTGTGCAGCTTAAT Direct Gain 0 0.935816528875098 NA NA prediction 0.871633057750197 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166215563 chr4:166215563 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_40514 0 0 1 0 2 KLHL2 chr4:166215620 5'GT 166215620 Upstream 58bp 37282 chr19 40151103 40151103 1 + T G HNSC 40151103 + 40151083 40151123 41 CCATCATATGTGAAGATGATTCAAGTGTGGAGAGATGTCTC CCATCATATGTGAAGATGATGCAAGTGTGGAGAGATGTCTC Direct Gain 0 0.935799926656078 NA NA prediction 0.871599853312157 Functional Gain - LGALS16 ENSG00000249861 CDS Human protein_coding chr19:40151103 chr19:40151103 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_40515 0 0 0 0 1 LGALS16 chr19:40151035 3'AG 40151035 Downstream 69bp 37283 chrX 128692902 128692902 1 + T G UCEC 128692902 + 128692882 128692922 41 TCTTTGTACCAAATACCCAATCTGGGCAGCGGGAGGGTCTC TCTTTGTACCAAATACCCAAGCTGGGCAGCGGGAGGGTCTC Direct Gain 0 0.935777649884916 NA NA prediction 0.871555299769831 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128692902 chrX:128692902 nonsynonymous SNV 0.960 1 21 hm7G_associated_SNPs_40516 0 0 1 0 2 OCRL chrX:128692817 3'AG 128692817 Downstream 86bp 37284 chrX 128692902 128692902 1 + T G UCEC 128692902 + 128692882 128692922 41 TCTTTGTACCAAATACCCAATCTGGGCAGCGGGAGGGTCTC TCTTTGTACCAAATACCCAAGCTGGGCAGCGGGAGGGTCTC Direct Gain 0 0.935777649884916 NA NA prediction 0.871555299769831 Functional Gain - OCRL ENSG00000122126 CDS Human protein_coding chrX:128692902 chrX:128692902 nonsynonymous SNV 0.960 1 21 hm7G_associated_SNPs_40516 0 0 1 0 2 OCRL chrX:128692978 5'GT 128692978 Upstream 77bp 37285 chr12 122473261 122473261 1 + A G UCEC 122473261 + 122473241 122473281 41 ACAAGAATAAGAAAAAAGGCAAGGACGAGAAGTGTGGCTCA ACAAGAATAAGAAAAAAGGCGAGGACGAGAAGTGTGGCTCA Direct Gain 0 0.935772568038538 NA NA prediction 0.871545136077075 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122473261 chr12:122473261 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_40517 0 0 1 0 2 BCL7A chr12:122473237 3'AG 122473237 Downstream 25bp 37286 chr12 122473261 122473261 1 + A G UCEC 122473261 + 122473241 122473281 41 ACAAGAATAAGAAAAAAGGCAAGGACGAGAAGTGTGGCTCA ACAAGAATAAGAAAAAAGGCGAGGACGAGAAGTGTGGCTCA Direct Gain 0 0.935772568038538 NA NA prediction 0.871545136077075 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122473261 chr12:122473261 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_40517 0 0 1 0 2 BCL7A chr12:122473333 5'GT 122473333 Upstream 73bp 37287 chr6 39041528 39041528 1 + A G UCEC 39041528 + 39041508 39041548 41 GCAATGGATCTTCAGGCTCTACGTGAGCATAGGCTGGGGTA GCAATGGATCTTCAGGCTCTGCGTGAGCATAGGCTGGGGTA Direct Gain 0 0.935769272198848 NA NA prediction 0.871538544397697 Functional Gain - GLP1R ENSG00000112164 CDS Human protein_coding chr6:39041528 chr6:39041528 nonsynonymous SNV 0.572 4 21 hm7G_associated_SNPs_40518 0 0 0 0 1 GLP1R chr6:39041545 5'GT 39041545 Upstream 18bp 37288 chr1 32504184 32504184 1 + A G LUSC 32504184 + 32504164 32504204 41 TACATACGCAGAACAAAGTTACGAAGGCTACGAAGGCTATT TACATACGCAGAACAAAGTTGCGAAGGCTACGAAGGCTATT Direct Gain 0 0.935767007476633 NA NA prediction 0.871534014953266 Functional Gain - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32504184 chr1:32504184 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_40519 0 0 1 0 1 KHDRBS1 chr1:32504153 3'AG 32504153 Downstream 32bp 37289 chr3 58252918 58252918 1 + A G GBM 58252918 + 58252898 58252938 41 ATTTCTCACCCCTTCCAGGTACTGGCGGAGGACATTGGGCA ATTTCTCACCCCTTCCAGGTGCTGGCGGAGGACATTGGGCA Direct Gain 0 0.935753588411144 NA NA prediction 0.871507176822289 Functional Gain - ABHD6 ENSG00000163686 CDS Human protein_coding chr3:58252918 chr3:58252918 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_40520 0 0 1 0 1 ABHD6 chr3:58252916 3'AG 58252916 Downstream 3bp 37290 chr8 109498743 109498743 1 + T G UCEC 109498743 + 109498723 109498763 41 TTTTTTTTTTTTAATTAGTTTGCAGGTCGAAGTAAGAAGGA TTTTTTTTTTTTAATTAGTTGGCAGGTCGAAGTAAGAAGGA Direct Gain 0 0.935701967437238 NA NA prediction 0.871403934874476 Functional Gain - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109498743 chr8:109498743 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40525 0 0 1 0 1 EMC2 chr8:109498741 3'AG 109498741 Downstream 3bp 37291 chr12 64178828 64178828 1 + C G BLCA 64178828 + 64178808 64178848 41 TCAATGGAGAGAAGGAAAGTCAATCGTAGGAAGAACACAGT TCAATGGAGAGAAGGAAAGTGAATCGTAGGAAGAACACAGT Direct Gain 0 0.935668664894694 NA NA prediction 0.871337329789389 Functional Gain - TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64178828 chr12:64178828 stopgain 0.579 0 21 hm7G_associated_SNPs_40527 0 0 1 0 2 TMEM5 chr12:64178750 3'AG 64178750 Downstream 79bp 37292 chr12 64178828 64178828 1 + C G BLCA 64178828 + 64178808 64178848 41 TCAATGGAGAGAAGGAAAGTCAATCGTAGGAAGAACACAGT TCAATGGAGAGAAGGAAAGTGAATCGTAGGAAGAACACAGT Direct Gain 0 0.935668664894694 NA NA prediction 0.871337329789389 Functional Gain - TMEM5 ENSG00000118600 CDS Human protein_coding chr12:64178828 chr12:64178828 stopgain 0.579 0 21 hm7G_associated_SNPs_40527 0 0 1 0 2 TMEM5 chr12:64178852 5'GT 64178852 Upstream 25bp 37293 chr5 56207012 56207012 1 + C G BLCA 56207012 + 56206992 56207032 41 TCAGGACCCTCCGATATGTTCCAGAGGAATCCAAAGACAAA TCAGGACCCTCCGATATGTTGCAGAGGAATCCAAAGACAAA Direct Gain 0 0.935658899451165 NA NA prediction 0.871317798902331 Functional Gain - SETD9 ENSG00000155542 CDS Human protein_coding chr5:56207012 chr5:56207012 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_40528 0 0 0 0 1 SETD9 chr5:56206996 3'AG 56206996 Downstream 17bp 37294 chr15 74623050 74623050 1 + A G UCEC 74623050 + 74623030 74623070 41 AGTGAGCTGGATATGAAGAAACTGAGGGACAGGGTGCAGCA AGTGAGCTGGATATGAAGAAGCTGAGGGACAGGGTGCAGCA Direct Gain 0 0.935654644507735 NA NA prediction 0.87130928901547 Functional Gain - CCDC33 ENSG00000140481 CDS Human protein_coding chr15:74623050 chr15:74623050 synonymous SNV . 0 21 hm7G_associated_SNPs_40529 0 0 0 0 1 CCDC33 chr15:74623092 5'GT 74623092 Upstream 43bp 37295 chr4 152201080 152201080 1 + T G CESC 152201080 + 152201060 152201100 41 TTCCCTCGTCAGTGAGAGGTTGATACTGACAGCAGCACACT TTCCCTCGTCAGTGAGAGGTGGATACTGACAGCAGCACACT Direct Gain 0 0.935603177689033 NA NA prediction 0.871206355378066 Functional Gain - PRSS48 ENSG00000189099 CDS Human protein_coding chr4:152201080 chr4:152201080 nonsynonymous SNV 0.027 0 21 hm7G_associated_SNPs_40534 0 0 0 0 1 PRSS48 chr4:152201110 5'GT 152201110 Upstream 31bp 37296 chr17 8370276 8370276 1 + C G CESC 8370276 + 8370256 8370296 41 ACGGCTTTGACCCCGCTCCTCCTCCTCCTGGTCTGGGCTCC ACGGCTTTGACCCCGCTCCTGCTCCTCCTGGTCTGGGCTCC Direct Gain 0 0.935580685287739 NA NA prediction 0.871161370575477 Functional Gain - NDEL1 ENSG00000166579 CDS Human protein_coding chr17:8370276 chr17:8370276 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_40535 0 0 1 0 1 NDEL1 chr17:8370248 3'AG 8370248 Downstream 29bp 37297 chr12 48360996 48360996 1 + T G rs199989373 48360996 + 48360976 48361016 41 TTTGCTGTTTGGTAGCTTCTTCTGCACGGTACCTGAGATCC TTTGCTGTTTGGTAGCTTCTGCTGCACGGTACCTGAGATCC Direct Gain 0 0.935579662956532 NA NA prediction 0.871159325913063 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48360996 chr12:48360996 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_40536 0 0 1 0 2 TMEM106C chr12:48360991 3'AG 48360991 Downstream 6bp 37298 chr12 48360996 48360996 1 + T G rs199989373 48360996 + 48360976 48361016 41 TTTGCTGTTTGGTAGCTTCTTCTGCACGGTACCTGAGATCC TTTGCTGTTTGGTAGCTTCTGCTGCACGGTACCTGAGATCC Direct Gain 0 0.935579662956532 NA NA prediction 0.871159325913063 Functional Gain - TMEM106C ENSG00000134291 CDS Human protein_coding chr12:48360996 chr12:48360996 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_40536 0 0 1 0 2 TMEM106C chr12:48361044 5'GT 48361044 Upstream 49bp 37299 chr2 187351163 187351163 1 + A G CHOL 187351163 + 187351143 187351183 41 AGCAAAAAGGCGGAGCAAAAAAAGAAGGAGAAGATTATCGA AGCAAAAAGGCGGAGCAAAAGAAGAAGGAGAAGATTATCGA Direct Gain 0 0.935572452051264 NA NA prediction 0.871144904102527 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187351163 chr2:187351163 synonymous SNV . 0 21 hm7G_associated_SNPs_40537 0 0 1 0 1 ZC3H15 chr2:187351184 5'GT 187351184 Upstream 22bp 37300 chr15 52194176 52194176 1 + A G UCEC 52194176 + 52194156 52194196 41 TTAAATTTGGATATCAGTTTACACAGCAGGGACCACGAACC TTAAATTTGGATATCAGTTTGCACAGCAGGGACCACGAACC Direct Gain 0 0.935565551855858 NA NA prediction 0.871131103711716 Functional Gain - TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52194176 chr15:52194176 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40538 0 0 1 1 2 TMOD3 chr15:52194089 3'AG 52194089 Downstream 88bp 37301 chr15 52194176 52194176 1 + A G UCEC 52194176 + 52194156 52194196 41 TTAAATTTGGATATCAGTTTACACAGCAGGGACCACGAACC TTAAATTTGGATATCAGTTTGCACAGCAGGGACCACGAACC Direct Gain 0 0.935565551855858 NA NA prediction 0.871131103711716 Functional Gain - TMOD3 ENSG00000138594 CDS Human protein_coding chr15:52194176 chr15:52194176 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40538 0 0 1 1 2 TMOD3 chr15:52194233 5'GT 52194233 Upstream 58bp 37302 chr4 26622294 26622294 1 + A G UCEC 26622294 + 26622274 26622314 41 TCTTAAAGAACCTTTGGTATACATGAGGAAAGCACAGGTTG TCTTAAAGAACCTTTGGTATGCATGAGGAAAGCACAGGTTG Direct Gain 0 0.935502081894006 NA NA prediction 0.871004163788011 Functional Gain - TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622294 chr4:26622294 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_40541 0 0 1 0 2 TBC1D19 chr4:26622235 3'AG 26622235 Downstream 60bp 37303 chr4 26622294 26622294 1 + A G UCEC 26622294 + 26622274 26622314 41 TCTTAAAGAACCTTTGGTATACATGAGGAAAGCACAGGTTG TCTTAAAGAACCTTTGGTATGCATGAGGAAAGCACAGGTTG Direct Gain 0 0.935502081894006 NA NA prediction 0.871004163788011 Functional Gain - TBC1D19 ENSG00000109680 CDS Human protein_coding chr4:26622294 chr4:26622294 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_40541 0 0 1 0 2 TBC1D19 chr4:26622310 5'GT 26622310 Upstream 17bp 37304 chr18 12421567 12421567 1 + A G UCEC 12421567 + 12421547 12421587 41 AACCAGTAGGACATTGACATACATCCGAGAACATTCTGTGG AACCAGTAGGACATTGACATGCATCCGAGAACATTCTGTGG Direct Gain 0 0.935493392143223 NA NA prediction 0.870986784286446 Functional Gain - PRELID3A ENSG00000141391 CDS Human protein_coding chr18:12421567 chr18:12421567 nonsynonymous SNV 0.976 4 21 hm7G_associated_SNPs_40542 0 0 1 0 2 PRELID3A chr18:12421539 3'AG 12421539 Downstream 29bp 37305 chr18 12421567 12421567 1 + A G UCEC 12421567 + 12421547 12421587 41 AACCAGTAGGACATTGACATACATCCGAGAACATTCTGTGG AACCAGTAGGACATTGACATGCATCCGAGAACATTCTGTGG Direct Gain 0 0.935493392143223 NA NA prediction 0.870986784286446 Functional Gain - PRELID3A ENSG00000141391 CDS Human protein_coding chr18:12421567 chr18:12421567 nonsynonymous SNV 0.976 4 21 hm7G_associated_SNPs_40542 0 0 1 0 2 PRELID3A chr18:12421628 5'GT 12421628 Upstream 62bp 37306 chr10 104809495 104809495 1 + A G GBM 104809495 + 104809475 104809515 41 CTGGCTATCGTGCAGCGGGTAAACAATGAGGGAGAAGGGGA CTGGCTATCGTGCAGCGGGTGAACAATGAGGGAGAAGGGGA Direct Gain 0 0.935483468007698 NA NA prediction 0.870966936015396 Functional Gain - CNNM2 ENSG00000148842 CDS Human protein_coding chr10:104809495 chr10:104809495 synonymous SNV . 0 21 hm7G_associated_SNPs_40545 0 0 1 0 1 CNNM2 chr10:104809464 3'AG 104809464 Downstream 32bp 37307 chr19 33465034 33465034 1 + A G rs146829849 33465034 + 33465014 33465054 41 GAACAATACTTCCCAGCCCTACAGAAGTTTACTGTGCTGGA GAACAATACTTCCCAGCCCTGCAGAAGTTTACTGTGCTGGA Direct Gain 0 0.935482245785713 NA NA prediction 0.870964491571426 Functional Gain - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465034 chr19:33465034 synonymous SNV . 0 21 hm7G_associated_SNPs_40546 0 0 1 0 2 FAAP24 chr19:33464966 3'AG 33464966 Downstream 69bp 37308 chr19 33465034 33465034 1 + A G rs146829849 33465034 + 33465014 33465054 41 GAACAATACTTCCCAGCCCTACAGAAGTTTACTGTGCTGGA GAACAATACTTCCCAGCCCTGCAGAAGTTTACTGTGCTGGA Direct Gain 0 0.935482245785713 NA NA prediction 0.870964491571426 Functional Gain - FAAP24 ENSG00000131944 CDS Human protein_coding chr19:33465034 chr19:33465034 synonymous SNV . 0 21 hm7G_associated_SNPs_40546 0 0 1 0 2 FAAP24 chr19:33465118 5'GT 33465118 Upstream 85bp 37309 chr1 76226871 76226871 1 + A G UCEC 76226871 + 76226851 76226891 41 TGAACTAGCTAGAATGAGTTACCAGAGAGCAGCTTGGGAGG TGAACTAGCTAGAATGAGTTGCCAGAGAGCAGCTTGGGAGG Direct Gain 0 0.935474382919394 NA NA prediction 0.870948765838788 Functional Gain - ACADM ENSG00000117054 CDS Human protein_coding chr1:76226871 chr1:76226871 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_40548 0 0 1 4 1 ACADM chr1:76226807 3'AG 76226807 Downstream 65bp 37310 chr17 40815491 40815491 1 + C G BLCA 40815491 + 40815471 40815511 41 TACAATTCACTCCTGACACTCAAGAGGCTGACGCAGAACGC TACAATTCACTCCTGACACTGAAGAGGCTGACGCAGAACGC Direct Gain 0 0.935472176250039 NA NA prediction 0.870944352500079 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40815491 chr17:40815491 synonymous SNV . 0 21 hm7G_associated_SNPs_40549 0 0 1 0 2 TUBG2 chr17:40815395 3'AG 40815395 Downstream 97bp 37311 chr17 40815491 40815491 1 + C G BLCA 40815491 + 40815471 40815511 41 TACAATTCACTCCTGACACTCAAGAGGCTGACGCAGAACGC TACAATTCACTCCTGACACTGAAGAGGCTGACGCAGAACGC Direct Gain 0 0.935472176250039 NA NA prediction 0.870944352500079 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40815491 chr17:40815491 synonymous SNV . 0 21 hm7G_associated_SNPs_40549 0 0 1 0 2 TUBG2 chr17:40815521 5'GT 40815521 Upstream 31bp 37312 chr1 43621941 43621941 1 + A G LIHC 43621941 + 43621921 43621961 41 CTGCAGTGACATCACTCTGTACAAGGCTAAAACGTGGGGCT CTGCAGTGACATCACTCTGTGCAAGGCTAAAACGTGGGGCT Direct Gain 0 0.935436373538235 NA NA prediction 0.870872747076469 Functional Gain - FAM183A ENSG00000186973 CDS Human protein_coding chr1:43621941 chr1:43621941 nonsynonymous SNV 0.533 2 21 hm7G_associated_SNPs_40550 0 0 0 0 1 FAM183A chr1:43621877 3'AG 43621877 Downstream 65bp 37313 chr1 209768420 209768420 1 + C G OV 209768420 + 209768400 209768440 41 TTTTATGGAAGTGCTGGGATCGTAAGTCCTGGGGCTGTGAG TTTTATGGAAGTGCTGGGATGGTAAGTCCTGGGGCTGTGAG Direct Gain 0 0.935429285009485 NA NA prediction 0.870858570018971 Functional Gain - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209768420 chr1:209768420 stopgain 1.000 1 21 hm7G_associated_SNPs_40551 0 0 0 0 1 CAMK1G chr1:209768420 5'GT 209768420 Upstream 1bp 37314 chr2 187529285 187529285 1 + C G CESC 187529285 + 187529265 187529305 41 TGATTGTTAAGGCTCAGAATCAAGGAGAAGGTGCCTACGAA TGATTGTTAAGGCTCAGAATGAAGGAGAAGGTGCCTACGAA Direct Gain 0 0.935426532925373 NA NA prediction 0.870853065850746 Functional Gain - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187529285 chr2:187529285 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40552 0 0 1 0 2 ITGAV chr2:187529221 3'AG 187529221 Downstream 65bp 37315 chr2 187529285 187529285 1 + C G CESC 187529285 + 187529265 187529305 41 TGATTGTTAAGGCTCAGAATCAAGGAGAAGGTGCCTACGAA TGATTGTTAAGGCTCAGAATGAAGGAGAAGGTGCCTACGAA Direct Gain 0 0.935426532925373 NA NA prediction 0.870853065850746 Functional Gain - ITGAV ENSG00000138448 CDS Human protein_coding chr2:187529285 chr2:187529285 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40552 0 0 1 0 2 ITGAV chr2:187529368 5'GT 187529368 Upstream 84bp 37316 chr1 162560177 162560177 1 + C G LUAD 162560177 + 162560157 162560197 41 CACTAAAGAATGCTGATAGTCAGAATGGGAAAGACAACCCT CACTAAAGAATGCTGATAGTGAGAATGGGAAAGACAACCCT Direct Gain 0 0.935407405954824 NA NA prediction 0.870814811909648 Functional Gain - UAP1 ENSG00000117143 CDS Human protein_coding chr1:162560177 chr1:162560177 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40554 0 0 1 0 1 UAP1 chr1:162560113 3'AG 162560113 Downstream 65bp 37317 chr17 7453503 7453503 1 + C G LUAD 7453503 + 7453483 7453523 41 TGAACCGACTAGTTCGGCCTCGCAGAAGTGGTGAGCATCCC TGAACCGACTAGTTCGGCCTGGCAGAAGTGGTGAGCATCCC Direct Gain 0 0.935243629147669 NA NA prediction 0.870487258295338 Functional Gain - TNFSF12;TNFSF12-TNFSF13 ENSG00000239697;ENSG00000248871 CDS Human other chr17:7453503 chr17:7453503 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_40558 0 0 0 0 2 TNFSF12;TNFSF12-TNFSF13 chr17:7453437 3'AG 7453437 Downstream 67bp 37318 chr17 7453503 7453503 1 + C G LUAD 7453503 + 7453483 7453523 41 TGAACCGACTAGTTCGGCCTCGCAGAAGTGGTGAGCATCCC TGAACCGACTAGTTCGGCCTGGCAGAAGTGGTGAGCATCCC Direct Gain 0 0.935243629147669 NA NA prediction 0.870487258295338 Functional Gain - TNFSF12;TNFSF12-TNFSF13 ENSG00000239697;ENSG00000248871 CDS Human other chr17:7453503 chr17:7453503 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_40558 0 0 0 0 2 TNFSF12;TNFSF12-TNFSF13 chr17:7453512 5'GT 7453512 Upstream 10bp 37319 chr14 76107351 76107351 1 + C G BLCA 76107351 + 76107331 76107371 41 TGAGTTTGCTGTGGAGCTCACGTACCCAGAATCAGAAGGCA TGAGTTTGCTGTGGAGCTCAGGTACCCAGAATCAGAAGGCA Direct Gain 0 0.935224862906288 NA NA prediction 0.870449725812576 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107351 chr14:76107351 nonsynonymous SNV 0.986 4 21 hm7G_associated_SNPs_40560 1 0 0 0 2 FLVCR2 chr14:76107298 3'AG 76107298 Downstream 54bp 37320 chr14 76107351 76107351 1 + C G BLCA 76107351 + 76107331 76107371 41 TGAGTTTGCTGTGGAGCTCACGTACCCAGAATCAGAAGGCA TGAGTTTGCTGTGGAGCTCAGGTACCCAGAATCAGAAGGCA Direct Gain 0 0.935224862906288 NA NA prediction 0.870449725812576 Functional Gain - FLVCR2 ENSG00000119686 CDS Human protein_coding chr14:76107351 chr14:76107351 nonsynonymous SNV 0.986 4 21 hm7G_associated_SNPs_40560 1 0 0 0 2 FLVCR2 chr14:76107403 5'GT 76107403 Upstream 53bp 37321 chr4 128608983 128608983 1 + C G rs151039121 128608983 + 128608963 128609003 41 GCAGTACTTTTAGACAACCTCCCTGGAGTCCGGTGGCTCAC GCAGTACTTTTAGACAACCTGCCTGGAGTCCGGTGGCTCAC Direct Gain 0 0.935201952993389 NA NA prediction 0.870403905986777 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128608983 chr4:128608983 synonymous SNV . 0 21 hm7G_associated_SNPs_40562 0 0 1 0 2 INTU chr4:128608896 3'AG 128608896 Downstream 88bp 37322 chr4 128608983 128608983 1 + C G rs151039121 128608983 + 128608963 128609003 41 GCAGTACTTTTAGACAACCTCCCTGGAGTCCGGTGGCTCAC GCAGTACTTTTAGACAACCTGCCTGGAGTCCGGTGGCTCAC Direct Gain 0 0.935201952993389 NA NA prediction 0.870403905986777 Functional Gain - INTU ENSG00000164066 CDS Human protein_coding chr4:128608983 chr4:128608983 synonymous SNV . 0 21 hm7G_associated_SNPs_40562 0 0 1 0 2 INTU chr4:128609022 5'GT 128609022 Upstream 40bp 37323 chr17 60493428 60493428 1 + A G UCEC 60493428 + 60493408 60493448 41 ACACCGAAAAGAGATGCTAAACCTCTGGCAGAAGATCCGAG ACACCGAAAAGAGATGCTAAGCCTCTGGCAGAAGATCCGAG Direct Gain 0 0.935199179360429 NA NA prediction 0.870398358720857 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60493428 chr17:60493428 nonsynonymous SNV 0.820 1 21 hm7G_associated_SNPs_40563 0 0 0 0 1 EFCAB3 chr17:60493364 3'AG 60493364 Downstream 65bp 37324 chr10 12133641 12133641 1 + C G CESC 12133641 + 12133621 12133661 41 ACCAGCTGGGTTACACCACTCCAGCTGAAAGAGGAAGGTCT ACCAGCTGGGTTACACCACTGCAGCTGAAAGAGGAAGGTCT Direct Gain 0 0.935173151851796 NA NA prediction 0.870346303703592 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12133641 chr10:12133641 nonsynonymous SNV 0.715 3 21 hm7G_associated_SNPs_40564 0 0 1 0 1 DHTKD1 chr10:12133683 5'GT 12133683 Upstream 43bp 37325 chrX 138612944 138612944 1 + C G HNSC 138612944 + 138612924 138612964 41 ATGCAGCGCGTGAACATGATCATGGCAGAATCACCAGGCCT ATGCAGCGCGTGAACATGATGATGGCAGAATCACCAGGCCT Direct Gain 0 0.935165121133803 NA NA prediction 0.870330242267607 Functional Gain - F9 ENSG00000101981 CDS Human protein_coding chrX:138612944 chrX:138612944 nonsynonymous SNV 0.967 2 21 hm7G_associated_SNPs_40565 0 0 0 0 1 F9 chrX:138613011 5'GT 138613011 Upstream 68bp 37326 chr3 186289895 186289895 1 + A G BLCA 186289895 + 186289875 186289915 41 ACTTCCCAGACGAGATTTCTATAAGATCTTGGGGGTGCCTC ACTTCCCAGACGAGATTTCTGTAAGATCTTGGGGGTGCCTC Direct Gain 0 0.93515362419297 NA NA prediction 0.870307248385939 Functional Gain - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186289895 chr3:186289895 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40566 0 0 1 0 1 DNAJB11 chr3:186289884 3'AG 186289884 Downstream 12bp 37327 chr19 30502047 30502047 1 + A G COAD 30502047 + 30502027 30502067 41 CACTTTAAAATTCAGTGAAAAGAAAGAAGAAGCCAAACGTA CACTTTAAAATTCAGTGAAAGGAAAGAAGAAGCCAAACGTA Direct Gain 0 0.935085784534617 NA NA prediction 0.870171569069234 Functional Gain - URI1 ENSG00000105176 CDS Human protein_coding chr19:30502047 chr19:30502047 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40569 0 0 1 0 2 URI1 chr19:30502001 3'AG 30502001 Downstream 47bp 37328 chr19 30502047 30502047 1 + A G COAD 30502047 + 30502027 30502067 41 CACTTTAAAATTCAGTGAAAAGAAAGAAGAAGCCAAACGTA CACTTTAAAATTCAGTGAAAGGAAAGAAGAAGCCAAACGTA Direct Gain 0 0.935085784534617 NA NA prediction 0.870171569069234 Functional Gain - URI1 ENSG00000105176 CDS Human protein_coding chr19:30502047 chr19:30502047 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40569 0 0 1 0 2 URI1 chr19:30502143 5'GT 30502143 Upstream 97bp 37329 chr1 203274847 203274847 1 + T G DLBC 203274847 + 203274827 203274867 41 CGAGCAGAGGCTTAAGGTCTTCAGCGGGGCGCTCCAGGAGG CGAGCAGAGGCTTAAGGTCTGCAGCGGGGCGCTCCAGGAGG Direct Gain 0 0.935065380035857 NA NA prediction 0.870130760071713 Functional Gain - BTG2 ENSG00000159388 CDS Human protein_coding chr1:203274847 chr1:203274847 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_40570 0 0 1 0 1 BTG2 chr1:203274876 5'GT 203274876 Upstream 30bp 37330 chr22 29141917 29141917 1 + A G rs17884212 29141917 + 29141897 29141937 41 ATGGACAGGCAATTCCTCATAGAAATAATGGAAATCAATGA ATGGACAGGCAATTCCTCATGGAAATAATGGAAATCAATGA Direct Gain 0 0.93504023602426 NA NA prediction 0.870080472048519 Functional Gain - HSCB ENSG00000100209 CDS Human protein_coding chr22:29141917 chr22:29141917 nonsynonymous SNV 0.958 0 21 hm7G_associated_SNPs_40572 0 0 1 0 2 HSCB chr22:29141852 3'AG 29141852 Downstream 66bp 37331 chr22 29141917 29141917 1 + A G rs17884212 29141917 + 29141897 29141937 41 ATGGACAGGCAATTCCTCATAGAAATAATGGAAATCAATGA ATGGACAGGCAATTCCTCATGGAAATAATGGAAATCAATGA Direct Gain 0 0.93504023602426 NA NA prediction 0.870080472048519 Functional Gain - HSCB ENSG00000100209 CDS Human protein_coding chr22:29141917 chr22:29141917 nonsynonymous SNV 0.958 0 21 hm7G_associated_SNPs_40572 0 0 1 0 2 HSCB chr22:29141996 5'GT 29141996 Upstream 80bp 37332 chr17 19316316 19316316 1 + C G CESC 19316316 + 19316296 19316336 41 AATGCCTCTGGGGGCCTCATCCTTAGGATGGGGGCCATCAA AATGCCTCTGGGGGCCTCATGCTTAGGATGGGGGCCATCAA Direct Gain 0 0.935007573953445 NA NA prediction 0.870015147906889 Functional Gain - RNF112 ENSG00000128482 CDS Human protein_coding chr17:19316316 chr17:19316316 nonsynonymous SNV 0.987 2 21 hm7G_associated_SNPs_40573 0 0 0 0 1 RNF112 chr17:19316251 3'AG 19316251 Downstream 66bp 37333 chr9 116046587 116046587 1 + T G UCEC 116046587 + 116046567 116046607 41 TTTTTAAGTCTTTGAATAATTTTTGCAGTCAGATTGGGGAT TTTTTAAGTCTTTGAATAATGTTTGCAGTCAGATTGGGGAT Direct Gain 0 0.934986207351144 NA NA prediction 0.869972414702289 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116046587 chr9:116046587 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40574 0 0 1 0 2 PRPF4 chr9:116046575 3'AG 116046575 Downstream 13bp 37334 chr9 116046587 116046587 1 + T G UCEC 116046587 + 116046567 116046607 41 TTTTTAAGTCTTTGAATAATTTTTGCAGTCAGATTGGGGAT TTTTTAAGTCTTTGAATAATGTTTGCAGTCAGATTGGGGAT Direct Gain 0 0.934986207351144 NA NA prediction 0.869972414702289 Functional Gain - PRPF4 ENSG00000136875 CDS Human protein_coding chr9:116046587 chr9:116046587 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40574 0 0 1 0 2 PRPF4 chr9:116046669 5'GT 116046669 Upstream 83bp 37335 chr11 64001393 64001393 1 + C G LUSC 64001393 + 64001373 64001413 41 AAGCAGATGCACCTTAACTTCATGGATGAAAAGGATCGGAT AAGCAGATGCACCTTAACTTGATGGATGAAAAGGATCGGAT Direct Gain 0 0.934921085663286 NA NA prediction 0.869842171326571 Functional Gain - DNAJC4 ENSG00000110011 CDS Human protein_coding chr11:64001393 chr11:64001393 nonsynonymous SNV 0.978 3 21 hm7G_associated_SNPs_40577 0 0 1 0 2 DNAJC4 chr11:64001366 3'AG 64001366 Downstream 28bp 37336 chr11 64001393 64001393 1 + C G LUSC 64001393 + 64001373 64001413 41 AAGCAGATGCACCTTAACTTCATGGATGAAAAGGATCGGAT AAGCAGATGCACCTTAACTTGATGGATGAAAAGGATCGGAT Direct Gain 0 0.934921085663286 NA NA prediction 0.869842171326571 Functional Gain - DNAJC4 ENSG00000110011 CDS Human protein_coding chr11:64001393 chr11:64001393 nonsynonymous SNV 0.978 3 21 hm7G_associated_SNPs_40577 0 0 1 0 2 DNAJC4 chr11:64001452 5'GT 64001452 Upstream 60bp 37337 chr20 1115769 1115769 1 + A G SARC 1115769 + 1115749 1115789 41 ATCTGCTTCCTGCAGGACCTACAAGAACAGTGAGGAGCTTC ATCTGCTTCCTGCAGGACCTGCAAGAACAGTGAGGAGCTTC Direct Gain 0 0.93491414738809 NA NA prediction 0.86982829477618 Functional Gain - PSMF1 ENSG00000125818 CDS Human protein_coding chr20:1115769 chr20:1115769 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_40578 0 0 1 0 1 PSMF1 chr20:1115764 3'AG 1115764 Downstream 6bp 37338 chr17 32598719 32598719 1 + C G BLCA 32598719 + 32598699 32598739 41 TCCTTTCTGCTCCACAGCTTCAAGACCAAACTGGACAAGGA TCCTTTCTGCTCCACAGCTTGAAGACCAAACTGGACAAGGA Direct Gain 0 0.934904283789784 NA NA prediction 0.869808567579569 Functional Gain - CCL7 ENSG00000108688 CDS Human protein_coding chr17:32598719 chr17:32598719 stopgain 0.960 1 21 hm7G_associated_SNPs_40579 0 0 0 1 1 CCL7 chr17:32598716 3'AG 32598716 Downstream 4bp 37339 chrX 47074272 47074272 1 + A G UCEC 47074272 + 47074252 47074292 41 TGGTGCTTGAGCTGTGCTGTAACGACGAGAGCGGCGAGGAT TGGTGCTTGAGCTGTGCTGTGACGACGAGAGCGGCGAGGAT Direct Gain 0 0.934895848169573 NA NA prediction 0.869791696339147 Functional Gain - UBA1 ENSG00000130985 CDS Human protein_coding chrX:47074272 chrX:47074272 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40581 0 0 1 0 1 UBA1 chrX:47074193 3'AG 47074193 Downstream 80bp 37340 chr5 135287028 135287028 1 - A C UCEC 135287028 - 135287008 135287048 41 GCCTCACCAGGGTGTGGACATCTTGTGCTCTGCTGGATCTA GCCTCACCAGGGTGTGGACAGCTTGTGCTCTGCTGGATCTA Direct Gain 0 0.934891651984494 NA NA prediction 0.869783303968989 Functional Gain - LECT2 ENSG00000145826 CDS Human protein_coding chr5:135287028 chr5:135287028 nonsynonymous SNV 0.232 1 21 hm7G_associated_SNPs_40582 0 0 0 0 1 LECT2 chr5:135287057 3'AG 135287057 Downstream 30bp 37341 chr16 1877857 1877857 1 + A G OV 1877857 + 1877837 1877877 41 GATGAGATCGAGGCTGGCATACACGGGCTGGTCAGTATGAC GATGAGATCGAGGCTGGCATGCACGGGCTGGTCAGTATGAC Direct Gain 0 0.934882856614212 NA NA prediction 0.869765713228423 Functional Gain - FAHD1 ENSG00000180185 CDS Human protein_coding chr16:1877857 chr16:1877857 nonsynonymous SNV 0.789 2 21 hm7G_associated_SNPs_40583 0 0 1 0 1 FAHD1 chr16:1877866 5'GT 1877866 Upstream 10bp 37342 chrX 47030585 47030585 1 + T G KIRC 47030585 + 47030565 47030605 41 GAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGC GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGC Direct Gain 0 0.934869980379249 NA NA prediction 0.869739960758497 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030585 chrX:47030585 nonsynonymous SNV 0.833 0 21 hm7G_associated_SNPs_40584 0 0 0 0 2 RBM10 chrX:47030509 3'AG 47030509 Downstream 77bp 37343 chrX 47030585 47030585 1 + T G KIRC 47030585 + 47030565 47030605 41 GAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGC GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGC Direct Gain 0 0.934869980379249 NA NA prediction 0.869739960758497 Functional Gain - RBM10 ENSG00000182872 CDS Human protein_coding chrX:47030585 chrX:47030585 nonsynonymous SNV 0.833 0 21 hm7G_associated_SNPs_40584 0 0 0 0 2 RBM10 chrX:47030657 5'GT 47030657 Upstream 73bp 37344 chr16 20432639 20432639 1 + A G UCEC 20432639 + 20432619 20432659 41 TCGAGACCCGCTGGCCATCTACTTTACCAGCGGAACCACCG TCGAGACCCGCTGGCCATCTGCTTTACCAGCGGAACCACCG Direct Gain 0 0.934857580273293 NA NA prediction 0.869715160546585 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432639 chr16:20432639 nonsynonymous SNV 0.982 4 21 hm7G_associated_SNPs_40585 0 0 0 0 2 ACSM5 chr16:20432580 3'AG 20432580 Downstream 60bp 37345 chr16 20432639 20432639 1 + A G UCEC 20432639 + 20432619 20432659 41 TCGAGACCCGCTGGCCATCTACTTTACCAGCGGAACCACCG TCGAGACCCGCTGGCCATCTGCTTTACCAGCGGAACCACCG Direct Gain 0 0.934857580273293 NA NA prediction 0.869715160546585 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20432639 chr16:20432639 nonsynonymous SNV 0.982 4 21 hm7G_associated_SNPs_40585 0 0 0 0 2 ACSM5 chr16:20432723 5'GT 20432723 Upstream 85bp 37346 chr12 113346577 113346577 1 + C G LUSC 113346577 + 113346557 113346597 41 AGCTTCGTACTGAGTTCGCTCCAGCTCGGGGAGGGGGTGGA AGCTTCGTACTGAGTTCGCTGCAGCTCGGGGAGGGGGTGGA Direct Gain 0 0.934845178554596 NA NA prediction 0.869690357109193 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113346577 chr12:113346577 synonymous SNV . 0 21 hm7G_associated_SNPs_40586 0 0 0 0 1 OAS1 chr12:113346629 5'GT 113346629 Upstream 53bp 37347 chr12 8289436 8289436 1 + C G CESC 8289436 + 8289416 8289456 41 TGCTTATTTTGTGGGGCTCTCAGATCCAGAAGGTCAGCGAC TGCTTATTTTGTGGGGCTCTGAGATCCAGAAGGTCAGCGAC Direct Gain 0 0.934830779428979 NA NA prediction 0.869661558857957 Functional Gain - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8289436 chr12:8289436 stopgain 0.252 0 21 hm7G_associated_SNPs_40588 0 0 0 0 2 CLEC4A chr12:8289384 3'AG 8289384 Downstream 53bp 37348 chr12 8289436 8289436 1 + C G CESC 8289436 + 8289416 8289456 41 TGCTTATTTTGTGGGGCTCTCAGATCCAGAAGGTCAGCGAC TGCTTATTTTGTGGGGCTCTGAGATCCAGAAGGTCAGCGAC Direct Gain 0 0.934830779428979 NA NA prediction 0.869661558857957 Functional Gain - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8289436 chr12:8289436 stopgain 0.252 0 21 hm7G_associated_SNPs_40588 0 0 0 0 2 CLEC4A chr12:8289499 5'GT 8289499 Upstream 64bp 37349 chr7 56065110 56065110 1 + A G UCEC 56065110 + 56065090 56065130 41 ACGGAATGCAGCATGGCACAAACATGGCTGGGAGGAATTGG ACGGAATGCAGCATGGCACAGACATGGCTGGGAGGAATTGG Direct Gain 0 0.934825352773895 NA NA prediction 0.86965070554779 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56065110 chr7:56065110 nonsynonymous SNV 0.987 1 21 hm7G_associated_SNPs_40589 0 0 0 0 2 NIPSNAP2 chr7:56065059 3'AG 56065059 Downstream 52bp 37350 chr7 56065110 56065110 1 + A G UCEC 56065110 + 56065090 56065130 41 ACGGAATGCAGCATGGCACAAACATGGCTGGGAGGAATTGG ACGGAATGCAGCATGGCACAGACATGGCTGGGAGGAATTGG Direct Gain 0 0.934825352773895 NA NA prediction 0.86965070554779 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56065110 chr7:56065110 nonsynonymous SNV 0.987 1 21 hm7G_associated_SNPs_40589 0 0 0 0 2 NIPSNAP2 chr7:56065142 5'GT 56065142 Upstream 33bp 37351 chr2 74435838 74435838 1 + C G LUSC 74435838 + 74435818 74435858 41 TGGGGTGTGTGGGAAATAATCAAGCGAACTGGTAGGTATAT TGGGGTGTGTGGGAAATAATGAAGCGAACTGGTAGGTATAT Direct Gain 0 0.934821683293324 NA NA prediction 0.869643366586649 Functional Gain - MTHFD2 ENSG00000065911 CDS Human protein_coding chr2:74435838 chr2:74435838 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40590 0 0 1 0 1 MTHFD2 chr2:74435848 5'GT 74435848 Upstream 11bp 37352 chr7 123270139 123270139 1 + A G PAAD 123270139 + 123270119 123270159 41 CTGAAGTCTGCACTAGAAGTACAGAGAGAATGGCCAGAAAT CTGAAGTCTGCACTAGAAGTGCAGAGAGAATGGCCAGAAAT Direct Gain 0 0.934793511337035 NA NA prediction 0.869587022674071 Functional Gain - ASB15 ENSG00000146809 CDS Human protein_coding chr7:123270139 chr7:123270139 synonymous SNV . 0 21 hm7G_associated_SNPs_40591 0 0 0 0 1 ASB15 chr7:123270173 5'GT 123270173 Upstream 35bp 37353 chr19 35657167 35657167 1 + C G BLCA 35657167 + 35657147 35657187 41 TCTGCAGATGAACACACCCTCCGGAAACGGGGGCTGTTGGT TCTGCAGATGAACACACCCTGCGGAAACGGGGGCTGTTGGT Direct Gain 0 0.934745059267291 NA NA prediction 0.869490118534581 Functional Gain - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35657167 chr19:35657167 synonymous SNV . 0 21 hm7G_associated_SNPs_40592 0 0 1 0 2 FXYD5 chr19:35657154 3'AG 35657154 Downstream 14bp 37354 chr19 35657167 35657167 1 + C G BLCA 35657167 + 35657147 35657187 41 TCTGCAGATGAACACACCCTCCGGAAACGGGGGCTGTTGGT TCTGCAGATGAACACACCCTGCGGAAACGGGGGCTGTTGGT Direct Gain 0 0.934745059267291 NA NA prediction 0.869490118534581 Functional Gain - FXYD5 ENSG00000089327 CDS Human protein_coding chr19:35657167 chr19:35657167 synonymous SNV . 0 21 hm7G_associated_SNPs_40592 0 0 1 0 2 FXYD5 chr19:35657228 5'GT 35657228 Upstream 62bp 37355 chr19 13059322 13059322 1 + C G CESC 13059322 + 13059302 13059342 41 AATTTGCAGCTCTGTTCCCTCTTCAGGTAGCAGCGGGCGAG AATTTGCAGCTCTGTTCCCTGTTCAGGTAGCAGCGGGCGAG Direct Gain 0 0.934744851619501 NA NA prediction 0.869489703239002 Functional Gain - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059322 chr19:13059322 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40593 0 0 1 0 2 RAD23A chr19:13059311 3'AG 13059311 Downstream 12bp 37356 chr19 13059322 13059322 1 + C G CESC 13059322 + 13059302 13059342 41 AATTTGCAGCTCTGTTCCCTCTTCAGGTAGCAGCGGGCGAG AATTTGCAGCTCTGTTCCCTGTTCAGGTAGCAGCGGGCGAG Direct Gain 0 0.934744851619501 NA NA prediction 0.869489703239002 Functional Gain - RAD23A ENSG00000179262 CDS Human protein_coding chr19:13059322 chr19:13059322 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40593 0 0 1 0 2 RAD23A chr19:13059366 5'GT 13059366 Upstream 45bp 37357 chr4 71384488 71384488 1 + C G rs28674149 71384488 + 71384468 71384508 41 TTGTTGTTGTAGGTAGCAATCTGAAACATGAGGAGTACGAT TTGTTGTTGTAGGTAGCAATGTGAAACATGAGGAGTACGAT Direct Gain 0 0.93474401032085 NA NA prediction 0.8694880206417 Functional Gain - AMTN ENSG00000187689 UTR5 Human protein_coding chr4:71384488 chr4:71384488 . . 0 21 hm7G_associated_SNPs_40594 0 0 0 0 2 AMTN chr4:71384480 3'AG 71384480 Downstream 9bp 37358 chr4 71384488 71384488 1 + C G rs28674149 71384488 + 71384468 71384508 41 TTGTTGTTGTAGGTAGCAATCTGAAACATGAGGAGTACGAT TTGTTGTTGTAGGTAGCAATGTGAAACATGAGGAGTACGAT Direct Gain 0 0.93474401032085 NA NA prediction 0.8694880206417 Functional Gain - AMTN ENSG00000187689 UTR5 Human protein_coding chr4:71384488 chr4:71384488 . . 0 21 hm7G_associated_SNPs_40594 0 0 0 0 2 AMTN chr4:71384548 5'GT 71384548 Upstream 61bp 37359 chr12 65633713 65633713 1 + A G GBM 65633713 + 65633693 65633733 41 TATATTAATATTACAGGTGTAGTGATGGTTTGTGTCGTTCT TATATTAATATTACAGGTGTGGTGATGGTTTGTGTCGTTCT Direct Gain 0 0.934698649235899 NA NA prediction 0.869397298471799 Functional Gain - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65633713 chr12:65633713 synonymous SNV . 0 21 hm7G_associated_SNPs_40597 0 0 0 0 2 LEMD3 chr12:65633709 3'AG 65633709 Downstream 5bp 37360 chr12 65633713 65633713 1 + A G GBM 65633713 + 65633693 65633733 41 TATATTAATATTACAGGTGTAGTGATGGTTTGTGTCGTTCT TATATTAATATTACAGGTGTGGTGATGGTTTGTGTCGTTCT Direct Gain 0 0.934698649235899 NA NA prediction 0.869397298471799 Functional Gain - LEMD3 ENSG00000174106 CDS Human protein_coding chr12:65633713 chr12:65633713 synonymous SNV . 0 21 hm7G_associated_SNPs_40597 0 0 0 0 2 LEMD3 chr12:65633810 5'GT 65633810 Upstream 98bp 37361 chr4 156135124 156135124 1 + C G LUAD 156135124 + 156135104 156135144 41 GGTGCAGAGGCTGATGAGAACCAGACAGTGGAAGAAATGAA GGTGCAGAGGCTGATGAGAAGCAGACAGTGGAAGAAATGAA Direct Gain 0 0.934680936052066 NA NA prediction 0.869361872104132 Functional Gain - NPY2R ENSG00000185149 CDS Human protein_coding chr4:156135124 chr4:156135124 nonsynonymous SNV 0.963 1 21 hm7G_associated_SNPs_40598 0 0 0 0 1 NPY2R chr4:156135044 3'AG 156135044 Downstream 81bp 37362 chr6 108499305 108499305 1 + C G LUAD 108499305 + 108499285 108499325 41 TCTTCCCTACCCAGTACCCCCATGAAGTGAATGGGACCCCA TCTTCCCTACCCAGTACCCCGATGAAGTGAATGGGACCCCA Direct Gain 0 0.9346657529413 NA NA prediction 0.869331505882601 Functional Gain - NR2E1 ENSG00000112333 CDS Human protein_coding chr6:108499305 chr6:108499305 nonsynonymous SNV 0.948 1 21 hm7G_associated_SNPs_40599 0 0 1 0 1 NR2E1 chr6:108499299 3'AG 108499299 Downstream 7bp 37363 chr12 124071320 124071320 1 + T G UCEC 124071320 + 124071300 124071340 41 GGACCAGATAACAAAGGAATTTACAAAGGAGACAGAGAATC GGACCAGATAACAAAGGAATGTACAAAGGAGACAGAGAATC Direct Gain 0 0.934661880756201 NA NA prediction 0.869323761512403 Functional Gain - TMED2 ENSG00000086598 CDS Human protein_coding chr12:124071320 chr12:124071320 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40600 0 0 1 0 1 TMED2 chr12:124071294 3'AG 124071294 Downstream 27bp 37364 chr7 6049123 6049123 1 + C G HNSC 6049123 + 6049103 6049143 41 CCAGCGCCGGGCGCTGGCCACGTGCAGGTAGGAGCGCGGGG CCAGCGCCGGGCGCTGGCCAGGTGCAGGTAGGAGCGCGGGG Direct Gain 0 0.934652475664474 NA NA prediction 0.869304951328948 Functional Gain - AIMP2 ENSG00000106305 CDS Human protein_coding chr7:6049123 chr7:6049123 nonsynonymous SNV 0.983 1 21 hm7G_associated_SNPs_40602 0 0 1 0 1 AIMP2 chr7:6049129 5'GT 6049129 Upstream 7bp 37365 chr19 39955605 39955605 1 + C G BLCA 39955605 + 39955585 39955625 41 AAGGAGATGACAGACGTGCTCAAAGTGGTGAAGGAGGTGGC AAGGAGATGACAGACGTGCTGAAAGTGGTGAAGGAGGTGGC Direct Gain 0 0.934596404422289 NA NA prediction 0.869192808844579 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39955605 chr19:39955605 synonymous SNV . 0 21 hm7G_associated_SNPs_40604 0 0 1 0 1 SUPT5H chr19:39955689 5'GT 39955689 Upstream 85bp 37366 chr18 29175087 29175087 1 + A G UCEC 29175087 + 29175067 29175107 41 CTTTCACACCTTATAGGAAAACCAGTGAGTCTGGAGAGCTG CTTTCACACCTTATAGGAAAGCCAGTGAGTCTGGAGAGCTG Direct Gain 0 0.934582599331363 NA NA prediction 0.869165198662726 Functional Gain - TTR ENSG00000118271 CDS Human protein_coding chr18:29175087 chr18:29175087 nonsynonymous SNV 0.899 5 21 hm7G_associated_SNPs_40605 1 0 1 0 1 TTR chr18:29175083 3'AG 29175083 Downstream 5bp 37367 chr1 218480849 218480849 1 + T G SKCM 218480849 + 218480829 218480869 41 AGGTTAAGGAAGCTGGAAGTTCTATGAGAAAGCGTGCTAAG AGGTTAAGGAAGCTGGAAGTGCTATGAGAAAGCGTGCTAAG Direct Gain 0 0.934556671701537 NA NA prediction 0.869113343403074 Functional Gain - RRP15 ENSG00000067533 CDS Human protein_coding chr1:218480849 chr1:218480849 nonsynonymous SNV 0.736 2 21 hm7G_associated_SNPs_40608 0 0 1 0 1 RRP15 chr1:218480773 3'AG 218480773 Downstream 77bp 37368 chrX 50085263 50085263 1 + A G UCEC 50085263 + 50085243 50085283 41 AAGCTGGTGGATCTCTACCTAATGAAGGCAGTATGCAAGAA AAGCTGGTGGATCTCTACCTGATGAAGGCAGTATGCAAGAA Direct Gain 0 0.93455058496962 NA NA prediction 0.869101169939241 Functional Gain - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50085263 chrX:50085263 synonymous SNV . 0 21 hm7G_associated_SNPs_40609 0 0 0 0 2 CCNB3 chrX:50085201 3'AG 50085201 Downstream 63bp 37369 chrX 50085263 50085263 1 + A G UCEC 50085263 + 50085243 50085283 41 AAGCTGGTGGATCTCTACCTAATGAAGGCAGTATGCAAGAA AAGCTGGTGGATCTCTACCTGATGAAGGCAGTATGCAAGAA Direct Gain 0 0.93455058496962 NA NA prediction 0.869101169939241 Functional Gain - CCNB3 ENSG00000147082 CDS Human protein_coding chrX:50085263 chrX:50085263 synonymous SNV . 0 21 hm7G_associated_SNPs_40609 0 0 0 0 2 CCNB3 chrX:50085338 5'GT 50085338 Upstream 76bp 37370 chr2 37459276 37459276 1 + A G STAD 37459276 + 37459256 37459296 41 TTTTATTTGGAGAGGGAAATACTTCAGCTCCGGGAATGAGC TTTTATTTGGAGAGGGAAATGCTTCAGCTCCGGGAATGAGC Direct Gain 0 0.934523433779422 NA NA prediction 0.869046867558845 Functional Gain - NDUFAF7 ENSG00000003509 CDS Human protein_coding chr2:37459276 chr2:37459276 nonsynonymous SNV 0.933 0 21 hm7G_associated_SNPs_40610 0 0 1 0 1 NDUFAF7 chr2:37459249 3'AG 37459249 Downstream 28bp 37371 chr14 20923824 20923824 1 + A G CESC 20923824 + 20923804 20923844 41 AATGCCGAAGCGTGGGAAAAAGGGAGCGGTGGCGGAAGACG AATGCCGAAGCGTGGGAAAAGGGGAGCGGTGGCGGAAGACG Direct Gain 0 0.93450651559082 NA NA prediction 0.869013031181641 Functional Gain - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20923824 chr14:20923824 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_40612 0 0 1 0 2 APEX1 chr14:20923737 3'AG 20923737 Downstream 88bp 37372 chr14 20923824 20923824 1 + A G CESC 20923824 + 20923804 20923844 41 AATGCCGAAGCGTGGGAAAAAGGGAGCGGTGGCGGAAGACG AATGCCGAAGCGTGGGAAAAGGGGAGCGGTGGCGGAAGACG Direct Gain 0 0.93450651559082 NA NA prediction 0.869013031181641 Functional Gain - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20923824 chr14:20923824 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_40612 0 0 1 0 2 APEX1 chr14:20923862 5'GT 20923862 Upstream 39bp 37373 chr5 169025557 169025557 1 + A G UCEC 169025557 + 169025537 169025577 41 AACACCTATTATACAGATTTACTTCAGATGAAGCTGGATAA AACACCTATTATACAGATTTGCTTCAGATGAAGCTGGATAA Direct Gain 0 0.934501717159503 NA NA prediction 0.869003434319006 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169025557 chr5:169025557 synonymous SNV . 0 21 hm7G_associated_SNPs_40613 0 0 1 0 2 SPDL1 chr5:169025480 3'AG 169025480 Downstream 78bp 37374 chr5 169025557 169025557 1 + A G UCEC 169025557 + 169025537 169025577 41 AACACCTATTATACAGATTTACTTCAGATGAAGCTGGATAA AACACCTATTATACAGATTTGCTTCAGATGAAGCTGGATAA Direct Gain 0 0.934501717159503 NA NA prediction 0.869003434319006 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169025557 chr5:169025557 synonymous SNV . 0 21 hm7G_associated_SNPs_40613 0 0 1 0 2 SPDL1 chr5:169025583 5'GT 169025583 Upstream 27bp 37375 chr12 112303982 112303982 1 + C G BLCA 112303982 + 112303962 112304002 41 TCTGTGTAAAGAAATCTACTCAAGAACGGTTTGCGCTGAAA TCTGTGTAAAGAAATCTACTGAAGAACGGTTTGCGCTGAAA Direct Gain 0 0.93446380683339 NA NA prediction 0.86892761366678 Functional Gain - MAPKAPK5 ENSG00000089022 CDS Human protein_coding chr12:112303982 chr12:112303982 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_40615 0 0 1 0 1 MAPKAPK5 chr12:112304035 5'GT 112304035 Upstream 54bp 37376 chr12 56437178 56437178 1 + A G COAD 56437178 + 56437158 56437198 41 CCCAAGCTGTATGTGAAGCTACATTACTGTGTGAGTTGTGC CCCAAGCTGTATGTGAAGCTGCATTACTGTGTGAGTTGTGC Direct Gain 0 0.934456065351829 NA NA prediction 0.868912130703657 Functional Gain - RPS26 ENSG00000197728 CDS Human protein_coding chr12:56437178 chr12:56437178 synonymous SNV . 0 21 hm7G_associated_SNPs_40616 0 0 1 0 2 RPS26 chr12:56437147 3'AG 56437147 Downstream 32bp 37377 chr12 56437178 56437178 1 + A G COAD 56437178 + 56437158 56437198 41 CCCAAGCTGTATGTGAAGCTACATTACTGTGTGAGTTGTGC CCCAAGCTGTATGTGAAGCTGCATTACTGTGTGAGTTGTGC Direct Gain 0 0.934456065351829 NA NA prediction 0.868912130703657 Functional Gain - RPS26 ENSG00000197728 CDS Human protein_coding chr12:56437178 chr12:56437178 synonymous SNV . 0 21 hm7G_associated_SNPs_40616 0 0 1 0 2 RPS26 chr12:56437277 5'GT 56437277 Upstream 100bp 37378 chr11 47609321 47609321 1 + C G rs141304714 47609321 + 47609301 47609341 41 AGGGCAGCCCATGGACAGCACCAGCGTGGGAGGTGGCCTGC AGGGCAGCCCATGGACAGCAGCAGCGTGGGAGGTGGCCTGC Direct Gain 0 0.934426079646893 NA NA prediction 0.868852159293787 Functional Gain - FAM180B ENSG00000196666 CDS Human protein_coding chr11:47609321 chr11:47609321 nonsynonymous SNV 0.843 0 21 hm7G_associated_SNPs_40618 0 0 0 0 2 FAM180B chr11:47609303 3'AG 47609303 Downstream 19bp 37379 chr11 47609321 47609321 1 + C G rs141304714 47609321 + 47609301 47609341 41 AGGGCAGCCCATGGACAGCACCAGCGTGGGAGGTGGCCTGC AGGGCAGCCCATGGACAGCAGCAGCGTGGGAGGTGGCCTGC Direct Gain 0 0.934426079646893 NA NA prediction 0.868852159293787 Functional Gain - FAM180B ENSG00000196666 CDS Human protein_coding chr11:47609321 chr11:47609321 nonsynonymous SNV 0.843 0 21 hm7G_associated_SNPs_40618 0 0 0 0 2 FAM180B chr11:47609373 5'GT 47609373 Upstream 53bp 37380 chr12 72335404 72335404 1 + A G LAML 72335404 + 72335384 72335424 41 CAAAAATGACGACAAAGGCAACAAGGGAAGCAGCAAACGTG CAAAAATGACGACAAAGGCAGCAAGGGAAGCAGCAAACGTG Direct Gain 0 0.934362463363533 NA NA prediction 0.868724926727067 Functional Gain - TPH2 ENSG00000139287 CDS Human protein_coding chr12:72335404 chr12:72335404 nonsynonymous SNV 0.199 1 21 hm7G_associated_SNPs_40621 0 0 0 0 1 TPH2 chr12:72335364 3'AG 72335364 Downstream 41bp 37381 chr5 141017909 141017909 1 + C G PRAD 141017909 + 141017889 141017929 41 TTCATGATCTGCCACGTGCTCAAGAAGAAGGGCTACCGCTG TTCATGATCTGCCACGTGCTGAAGAAGAAGGGCTACCGCTG Direct Gain 0 0.934260174192716 NA NA prediction 0.868520348385431 Functional Gain - RELL2 ENSG00000164620 CDS Human protein_coding chr5:141017909 chr5:141017909 synonymous SNV . 0 21 hm7G_associated_SNPs_40623 0 0 0 0 1 RELL2 chr5:141017976 5'GT 141017976 Upstream 68bp 37382 chr16 23208603 23208603 1 + A G STAD 23208603 + 23208583 23208623 41 AGGGCTGCAAGTCATTTTGTACATAAACGAAGAGGAATACA AGGGCTGCAAGTCATTTTGTGCATAAACGAAGAGGAATACA Direct Gain 0 0.93422250046922 NA NA prediction 0.868445000938441 Functional Gain - SCNN1G ENSG00000166828 CDS Human protein_coding chr16:23208603 chr16:23208603 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_40626 0 0 0 0 1 SCNN1G chr16:23208585 3'AG 23208585 Downstream 19bp 37383 chr7 98256620 98256620 1 + C G HNSC 98256620 + 98256600 98256640 41 CTGGCCCCCTGGCACCCCATCAAGCCCGGGGGCGTGCTGAT CTGGCCCCCTGGCACCCCATGAAGCCCGGGGGCGTGCTGAT Direct Gain 0 0.934220357177908 NA NA prediction 0.868440714355815 Functional Gain - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98256620 chr7:98256620 nonsynonymous SNV 0.974 4 21 hm7G_associated_SNPs_40627 0 0 1 0 1 NPTX2 chr7:98256656 5'GT 98256656 Upstream 37bp 37384 chr1 47280927 47280927 1 + T G rs17102592 47280927 + 47280907 47280947 41 GATCCTAGGGGACCAGGACTTCTTCCAGTGGTGAGTCTGAG GATCCTAGGGGACCAGGACTGCTTCCAGTGGTGAGTCTGAG Direct Gain 0 0.934208670505492 NA NA prediction 0.868417341010985 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47280927 chr1:47280927 nonsynonymous SNV 0.007 1 21 hm7G_associated_SNPs_40628 0 0 0 0 1 CYP4B1 chr1:47280936 5'GT 47280936 Upstream 10bp 37385 chr14 75471540 75471540 1 + C G LUSC 75471540 + 75471520 75471560 41 CGAACAGTAGAGGCCTTCCTCAAAGAGGCTGCCCGAAAGAG CGAACAGTAGAGGCCTTCCTGAAAGAGGCTGCCCGAAAGAG Direct Gain 0 0.934167155976244 NA NA prediction 0.868334311952488 Functional Gain - EIF2B2 ENSG00000119718 CDS Human protein_coding chr14:75471540 chr14:75471540 synonymous SNV . 0 21 hm7G_associated_SNPs_40629 0 0 1 0 1 EIF2B2 chr14:75471603 5'GT 75471603 Upstream 64bp 37386 chr3 178948070 178948070 1 + A G STAD 178948070 + 178948050 178948090 41 AGAAGAAAAAATTTGGTTATAAACGAGAACGTGTGCCATTT AGAAGAAAAAATTTGGTTATGAACGAGAACGTGTGCCATTT Direct Gain 0 0.934162943863869 NA NA prediction 0.868325887727739 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178948070 chr3:178948070 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40630 0 0 0 0 2 PIK3CA chr3:178948013 3'AG 178948013 Downstream 58bp 37387 chr3 178948070 178948070 1 + A G STAD 178948070 + 178948050 178948090 41 AGAAGAAAAAATTTGGTTATAAACGAGAACGTGTGCCATTT AGAAGAAAAAATTTGGTTATGAACGAGAACGTGTGCCATTT Direct Gain 0 0.934162943863869 NA NA prediction 0.868325887727739 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178948070 chr3:178948070 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40630 0 0 0 0 2 PIK3CA chr3:178948164 5'GT 178948164 Upstream 95bp 37388 chr8 22162373 22162373 1 + C G LUSC 22162373 + 22162353 22162393 41 CCAGTGAGAGACAGGATAATCATGGGATGGTGAGTAGGGCT CCAGTGAGAGACAGGATAATGATGGGATGGTGAGTAGGGCT Direct Gain 0 0.934135060860616 NA NA prediction 0.868270121721231 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22162373 chr8:22162373 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_40632 0 0 0 0 2 PIWIL2 chr8:22162297 3'AG 22162297 Downstream 77bp 37389 chr8 22162373 22162373 1 + C G LUSC 22162373 + 22162353 22162393 41 CCAGTGAGAGACAGGATAATCATGGGATGGTGAGTAGGGCT CCAGTGAGAGACAGGATAATGATGGGATGGTGAGTAGGGCT Direct Gain 0 0.934135060860616 NA NA prediction 0.868270121721231 Functional Gain - PIWIL2 ENSG00000197181 CDS Human protein_coding chr8:22162373 chr8:22162373 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_40632 0 0 0 0 2 PIWIL2 chr8:22162381 5'GT 22162381 Upstream 9bp 37390 chr16 23693451 23693451 1 + C G CESC 23693451 + 23693431 23693471 41 AAAGAGACCTACCTCCGGATCAAGAAGAATGAATACAGTAT AAAGAGACCTACCTCCGGATGAAGAAGAATGAATACAGTAT Direct Gain 0 0.934043514196153 NA NA prediction 0.868087028392306 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23693451 chr16:23693451 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40638 0 0 1 0 2 PLK1 chr16:23693385 3'AG 23693385 Downstream 67bp 37391 chr16 23693451 23693451 1 + C G CESC 23693451 + 23693431 23693471 41 AAAGAGACCTACCTCCGGATCAAGAAGAATGAATACAGTAT AAAGAGACCTACCTCCGGATGAAGAAGAATGAATACAGTAT Direct Gain 0 0.934043514196153 NA NA prediction 0.868087028392306 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23693451 chr16:23693451 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40638 0 0 1 0 2 PLK1 chr16:23693478 5'GT 23693478 Upstream 28bp 37392 chr2 220368852 220368852 1 + C G LUAD 220368852 + 220368832 220368872 41 ACATTTATCAGTGACATCATCAACTGCGGCATCTACCTCTT ACATTTATCAGTGACATCATGAACTGCGGCATCTACCTCTT Direct Gain 0 0.934042711072934 NA NA prediction 0.868085422145868 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368852 chr2:220368852 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40639 0 0 1 10 2 GMPPA chr2:220368805 3'AG 220368805 Downstream 48bp 37393 chr2 220368852 220368852 1 + C G LUAD 220368852 + 220368832 220368872 41 ACATTTATCAGTGACATCATCAACTGCGGCATCTACCTCTT ACATTTATCAGTGACATCATGAACTGCGGCATCTACCTCTT Direct Gain 0 0.934042711072934 NA NA prediction 0.868085422145868 Functional Gain - GMPPA ENSG00000144591 CDS Human protein_coding chr2:220368852 chr2:220368852 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40639 0 0 1 10 2 GMPPA chr2:220368935 5'GT 220368935 Upstream 84bp 37394 chr10 5008185 5008185 1 + A G COAD 5008185 + 5008165 5008205 41 TATTGATTCTGCTCATTTATACAATAATGAGGAGCAGGTTG TATTGATTCTGCTCATTTATGCAATAATGAGGAGCAGGTTG Direct Gain 0 0.934025793138774 NA NA prediction 0.868051586277548 Functional Gain - AKR1C1 ENSG00000187134 CDS Human protein_coding chr10:5008185 chr10:5008185 nonsynonymous SNV 0.002 3 21 hm7G_associated_SNPs_40640 0 0 0 0 2 AKR1C1 chr10:5008106 3'AG 5008106 Downstream 80bp 37395 chr10 5008185 5008185 1 + A G COAD 5008185 + 5008165 5008205 41 TATTGATTCTGCTCATTTATACAATAATGAGGAGCAGGTTG TATTGATTCTGCTCATTTATGCAATAATGAGGAGCAGGTTG Direct Gain 0 0.934025793138774 NA NA prediction 0.868051586277548 Functional Gain - AKR1C1 ENSG00000187134 CDS Human protein_coding chr10:5008185 chr10:5008185 nonsynonymous SNV 0.002 3 21 hm7G_associated_SNPs_40640 0 0 0 0 2 AKR1C1 chr10:5008273 5'GT 5008273 Upstream 89bp 37396 chr1 231487255 231487255 1 + C G LUSC 231487255 + 231487235 231487275 41 CAAGGAACCAGAGAATTACTCAAAAAAAGGCAAAGGAAAGG CAAGGAACCAGAGAATTACTGAAAAAAAGGCAAAGGAAAGG Direct Gain 0 0.934017363416588 NA NA prediction 0.868034726833175 Functional Gain - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231487255 chr1:231487255 stopgain 0.996 0 21 hm7G_associated_SNPs_40641 0 0 1 0 1 SPRTN chr1:231487317 5'GT 231487317 Upstream 63bp 37397 chr1 206858781 206858781 1 + C G PRAD 206858781 + 206858761 206858801 41 TACAAGGTCACCAGCCAGGTCCTGGGGCTGGGCATCAACGG TACAAGGTCACCAGCCAGGTGCTGGGGCTGGGCATCAACGG Direct Gain 0 0.934011979098674 NA NA prediction 0.868023958197349 Functional Gain - MAPKAPK2 ENSG00000162889 CDS Human protein_coding chr1:206858781 chr1:206858781 synonymous SNV . 0 21 hm7G_associated_SNPs_40642 0 0 1 0 1 MAPKAPK2 chr1:206858853 5'GT 206858853 Upstream 73bp 37398 chr19 4683321 4683321 1 + C G rs576625122 4683321 + 4683301 4683341 41 GGGCAATGAGGAGGGGGGCTCGGCCCCGTGGGGCTGCTGCA GGGCAATGAGGAGGGGGGCTGGGCCCCGTGGGGCTGCTGCA Direct Gain 0 0.933984755442648 NA NA prediction 0.867969510885295 Functional Gain - DPP9-AS1 ENSG00000205790 ncRNA_exonic Human antisense chr19:4683321 chr19:4683321 . . 0 21 hm7G_associated_SNPs_40643 0 0 0 0 1 DPP9-AS1 chr19:4683387 5'GT 4683387 Upstream 67bp 37399 chr10 103988655 103988655 1 + C G LUAD 103988655 + 103988635 103988675 41 TACCACCACAGCACAGTGCTCGTGTACACAAGCTTTGGATA TACCACCACAGCACAGTGCTGGTGTACACAAGCTTTGGATA Direct Gain 0 0.93396047277648 NA NA prediction 0.86792094555296 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103988655 chr10:103988655 synonymous SNV . 0 21 hm7G_associated_SNPs_40647 0 0 0 0 1 ELOVL3 chr10:103988582 3'AG 103988582 Downstream 74bp 37400 chr5 54654434 54654434 1 + C G SKCM 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTGGTGCTGGAAGGAGAGGAATG Direct Gain 0 0.933924884602268 NA NA prediction 0.867849769204536 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654434 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_40648 0 0 1 0 2 SKIV2L2 chr5:54654401 3'AG 54654401 Downstream 34bp 37401 chr5 54654434 54654434 1 + C G SKCM 54654434 + 54654414 54654454 41 AATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATG AATACATTCAGATGTCTGGTGGTGCTGGAAGGAGAGGAATG Direct Gain 0 0.933924884602268 NA NA prediction 0.867849769204536 Functional Gain - SKIV2L2 ENSG00000039123 CDS Human protein_coding chr5:54654434 chr5:54654434 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_40648 0 0 1 0 2 SKIV2L2 chr5:54654526 5'GT 54654526 Upstream 93bp 37402 chr4 123336554 123336554 1 + A G KIRP 123336554 + 123336534 123336574 41 GTGATGGGAATTGCAGTGATACCAGAGGCTTAGAAATCGCT GTGATGGGAATTGCAGTGATGCCAGAGGCTTAGAAATCGCT Direct Gain 0 0.933919392777685 NA NA prediction 0.867838785555369 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123336554 chr4:123336554 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_40649 0 0 0 0 1 ADAD1 chr4:123336534 3'AG 123336534 Downstream 21bp 37403 chr15 78632830 78632830 1 + C G rs1127472 78632830 + 78632810 78632850 41 GAGAATTTCGACGAGCTGCTCAAGGCACTGGGTAAGCTGGT GAGAATTTCGACGAGCTGCTGAAGGCACTGGGTAAGCTGGT Direct Gain 0 0.933857309327381 NA NA prediction 0.867714618654762 Functional Gain - CRABP1 ENSG00000166426 CDS Human protein_coding chr15:78632830 chr15:78632830 synonymous SNV . 0 21 hm7G_associated_SNPs_40651 0 0 0 0 1 CRABP1 chr15:78632840 5'GT 78632840 Upstream 11bp 37404 chr9 90345956 90345956 1 + A G rs142361476 90345956 + 90345936 90345976 41 TGGGGCATGGGTGGCTACGTAAAGATGGCCAAAGACCGGAG TGGGGCATGGGTGGCTACGTGAAGATGGCCAAAGACCGGAG Direct Gain 0 0.933845535187636 NA NA prediction 0.867691070375273 Functional Gain - CTSL ENSG00000135047 CDS Human protein_coding chr9:90345956 chr9:90345956 synonymous SNV . 0 21 hm7G_associated_SNPs_40652 0 0 1 0 1 CTSL chr9:90345923 3'AG 90345923 Downstream 34bp 37405 chr2 10059866 10059866 1 + T G SKCM 10059866 + 10059846 10059886 41 TGTTTCCATGGACACAGCCTTCAGGGAGTCCTGAAAGAGAA TGTTTCCATGGACACAGCCTGCAGGGAGTCCTGAAAGAGAA Direct Gain 0 0.933831980255822 NA NA prediction 0.867663960511645 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10059866 chr2:10059866 synonymous SNV . 0 21 hm7G_associated_SNPs_40654 0 0 1 0 1 TAF1B chr2:10059949 5'GT 10059949 Upstream 84bp 37406 chr2 9595881 9595881 1 + T G COAD 9595881 + 9595861 9595901 41 CTGTTACCAGCTGCAGAAATTGACAGGTGTGTGTGTGTACT CTGTTACCAGCTGCAGAAATGGACAGGTGTGTGTGTGTACT Direct Gain 0 0.933827870484171 NA NA prediction 0.867655740968343 Functional Gain - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9595881 chr2:9595881 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40655 0 0 1 0 2 CPSF3 chr2:9595788 3'AG 9595788 Downstream 94bp 37407 chr2 9595881 9595881 1 + T G COAD 9595881 + 9595861 9595901 41 CTGTTACCAGCTGCAGAAATTGACAGGTGTGTGTGTGTACT CTGTTACCAGCTGCAGAAATGGACAGGTGTGTGTGTGTACT Direct Gain 0 0.933827870484171 NA NA prediction 0.867655740968343 Functional Gain - CPSF3 ENSG00000119203 CDS Human protein_coding chr2:9595881 chr2:9595881 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40655 0 0 1 0 2 CPSF3 chr2:9595886 5'GT 9595886 Upstream 6bp 37408 chr9 140648655 140648655 1 + C G BLCA 140648655 + 140648635 140648675 41 AGCATTAAGAAGAAATTTCTCAAGAGGAAAGGAAAGACCGA AGCATTAAGAAGAAATTTCTGAAGAGGAAAGGAAAGACCGA Direct Gain 0 0.933811042356612 NA NA prediction 0.867622084713224 Functional Gain - EHMT1 ENSG00000181090 CDS Human protein_coding chr9:140648655 chr9:140648655 synonymous SNV . 0 21 hm7G_associated_SNPs_40656 0 0 1 0 1 EHMT1 chr9:140648743 5'GT 140648743 Upstream 89bp 37409 chr1 153963256 153963256 1 + C G rs562261153 153963256 + 153963236 153963276 41 CTCCTTTCCGGCGGTGACGACCTACGCACACGAGAACATGC CTCCTTTCCGGCGGTGACGAGCTACGCACACGAGAACATGC Direct Gain 0 0.933808528650314 NA NA prediction 0.867617057300629 Functional Gain - RPS27 ENSG00000177954 UTR5 Human protein_coding chr1:153963256 chr1:153963256 . . 0 21 hm7G_associated_SNPs_40657 0 0 1 0 1 RPS27 chr1:153963278 5'GT 153963278 Upstream 23bp 37410 chr10 82187195 82187195 1 + C G BLCA 82187195 + 82187175 82187215 41 AACGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCAT AACGGAGGCTTCTCTGGAAAGCTGGAAGGAGAAGGCTTCAT Direct Gain 0 0.933807450818592 NA NA prediction 0.867614901637185 Functional Gain - FAM213A ENSG00000122378 CDS Human protein_coding chr10:82187195 chr10:82187195 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40658 0 0 1 0 1 FAM213A chr10:82187252 5'GT 82187252 Upstream 58bp 37411 chr1 100133225 100133225 1 + C G BLCA 100133225 + 100133205 100133245 41 CCTTGAGGGAGAAATGGCTTCTAGATGGAATCAGCAGCGGA CCTTGAGGGAGAAATGGCTTGTAGATGGAATCAGCAGCGGA Direct Gain 0 0.933798208037898 NA NA prediction 0.867596416075795 Functional Gain - PALMD ENSG00000099260 CDS Human protein_coding chr1:100133225 chr1:100133225 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40659 0 0 1 0 2 PALMD chr1:100133198 3'AG 100133198 Downstream 28bp 37412 chr1 100133225 100133225 1 + C G BLCA 100133225 + 100133205 100133245 41 CCTTGAGGGAGAAATGGCTTCTAGATGGAATCAGCAGCGGA CCTTGAGGGAGAAATGGCTTGTAGATGGAATCAGCAGCGGA Direct Gain 0 0.933798208037898 NA NA prediction 0.867596416075795 Functional Gain - PALMD ENSG00000099260 CDS Human protein_coding chr1:100133225 chr1:100133225 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40659 0 0 1 0 2 PALMD chr1:100133322 5'GT 100133322 Upstream 98bp 37413 chr14 24587973 24587973 1 + A G UCEC 24587973 + 24587953 24587993 41 TCTTAGTTCATATCTGCAATATCTATGGTGAGGGAGATACA TCTTAGTTCATATCTGCAATGTCTATGGTGAGGGAGATACA Direct Gain 0 0.933751396572856 NA NA prediction 0.867502793145713 Functional Gain - DCAF11 ENSG00000100897 CDS Human protein_coding chr14:24587973 chr14:24587973 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_40660 0 0 1 0 2 DCAF11 chr14:24587959 3'AG 24587959 Downstream 15bp 37414 chr14 24587973 24587973 1 + A G UCEC 24587973 + 24587953 24587993 41 TCTTAGTTCATATCTGCAATATCTATGGTGAGGGAGATACA TCTTAGTTCATATCTGCAATGTCTATGGTGAGGGAGATACA Direct Gain 0 0.933751396572856 NA NA prediction 0.867502793145713 Functional Gain - DCAF11 ENSG00000100897 CDS Human protein_coding chr14:24587973 chr14:24587973 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_40660 0 0 1 0 2 DCAF11 chr14:24588013 5'GT 24588013 Upstream 41bp 37415 chr20 2597898 2597898 1 + C G CESC 2597898 + 2597878 2597918 41 CTGGTGCTCTTCCTCAGCCTCCTGCCGGTGGCCTACACCAT CTGGTGCTCTTCCTCAGCCTGCTGCCGGTGGCCTACACCAT Direct Gain 0 0.933750455636181 NA NA prediction 0.867500911272362 Functional Gain - TMC2 ENSG00000149488 CDS Human protein_coding chr20:2597898 chr20:2597898 synonymous SNV . 0 21 hm7G_associated_SNPs_40661 0 0 0 0 1 TMC2 chr20:2597957 5'GT 2597957 Upstream 60bp 37416 chr6 35426205 35426205 1 + C G BLCA 35426205 + 35426185 35426225 41 ACTGTGCTGACCAGAAGCCTCTTTCTTGGACGGGTAGGTGT ACTGTGCTGACCAGAAGCCTGTTTCTTGGACGGGTAGGTGT Direct Gain 0 0.933729587945846 NA NA prediction 0.867459175891693 Functional Gain - FANCE ENSG00000112039 CDS Human protein_coding chr6:35426205 chr6:35426205 synonymous SNV . 0 21 hm7G_associated_SNPs_40662 0 0 0 0 1 FANCE chr6:35426217 5'GT 35426217 Upstream 13bp 37417 chr2 176996143 176996143 1 + A G COAD 176996143 + 176996123 176996163 41 ACCCCTATCTGACCAGGAAAAGAAGAATCGAGGTTTCCCAC ACCCCTATCTGACCAGGAAAGGAAGAATCGAGGTTTCCCAC Direct Gain 0 0.933681975089851 NA NA prediction 0.867363950179702 Functional Gain - HOXD8 ENSG00000175879 CDS Human protein_coding chr2:176996143 chr2:176996143 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40666 0 0 0 0 2 HOXD8 chr2:176996045 3'AG 176996045 Downstream 99bp 37418 chr2 176996143 176996143 1 + A G COAD 176996143 + 176996123 176996163 41 ACCCCTATCTGACCAGGAAAAGAAGAATCGAGGTTTCCCAC ACCCCTATCTGACCAGGAAAGGAAGAATCGAGGTTTCCCAC Direct Gain 0 0.933681975089851 NA NA prediction 0.867363950179702 Functional Gain - HOXD8 ENSG00000175879 CDS Human protein_coding chr2:176996143 chr2:176996143 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40666 0 0 0 0 2 HOXD8 chr2:176996048 3'AG 176996048 Downstream 96bp 37419 chr2 75116558 75116558 1 + C G BLCA 75116558 + 75116538 75116578 41 AACCGTGGGCTGGACGCTCTCAAAGTGACAGTGGGTGTGGA AACCGTGGGCTGGACGCTCTGAAAGTGACAGTGGGTGTGGA Direct Gain 0 0.933610873242528 NA NA prediction 0.867221746485056 Functional Gain - HK2 ENSG00000159399 CDS Human protein_coding chr2:75116558 chr2:75116558 synonymous SNV . 0 21 hm7G_associated_SNPs_40669 0 0 0 0 1 HK2 chr2:75116605 5'GT 75116605 Upstream 48bp 37420 chr11 93806484 93806484 1 + C G LIHC 93806484 + 93806464 93806504 41 ATTTTTTCAGGCCCAGTCATCAAGGCAGAGGTGGGTGATAC ATTTTTTCAGGCCCAGTCATGAAGGCAGAGGTGGGTGATAC Direct Gain 0 0.933574678653434 NA NA prediction 0.867149357306868 Functional Gain - HEPHL1 ENSG00000181333 CDS Human protein_coding chr11:93806484 chr11:93806484 nonsynonymous SNV 0.996 5 21 hm7G_associated_SNPs_40671 0 0 0 0 1 HEPHL1 chr11:93806474 3'AG 93806474 Downstream 11bp 37421 chr2 169626053 169626053 1 + A G LGG 169626053 + 169626033 169626073 41 ATCGAAGTGATATTGAGTCTAGCTCAGATGAGGAGGACTCA ATCGAAGTGATATTGAGTCTGGCTCAGATGAGGAGGACTCA Direct Gain 0 0.933565731680318 NA NA prediction 0.867131463360636 Functional Gain - CERS6 ENSG00000172292 CDS Human protein_coding chr2:169626053 chr2:169626053 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40672 0 0 1 0 1 CERS6 chr2:169626020 3'AG 169626020 Downstream 34bp 37422 chr8 21844756 21844756 1 + A G UCEC 21844756 + 21844736 21844776 41 TGAACAGTTTCGTAAGATCTACATTGGGGACCAAGTGCAGA TGAACAGTTTCGTAAGATCTGCATTGGGGACCAAGTGCAGA Direct Gain 0 0.933550472608862 NA NA prediction 0.867100945217723 Functional Gain - XPO7 ENSG00000130227 CDS Human protein_coding chr8:21844756 chr8:21844756 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40673 0 0 1 0 1 XPO7 chr8:21844787 5'GT 21844787 Upstream 32bp 37423 chr8 39871152 39871152 1 + A G LUSC 39871152 + 39871132 39871172 41 TTCCCAAGAGCCCCTGAAATACTCCGGCGGGAGTGCAGCTC TTCCCAAGAGCCCCTGAAATGCTCCGGCGGGAGTGCAGCTC Direct Gain 0 0.933521890554433 NA NA prediction 0.867043781108865 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871152 chr8:39871152 nonsynonymous SNV 0.010 1 21 hm7G_associated_SNPs_40676 0 0 0 0 2 IDO2 chr8:39871084 3'AG 39871084 Downstream 69bp 37424 chr8 39871152 39871152 1 + A G LUSC 39871152 + 39871132 39871172 41 TTCCCAAGAGCCCCTGAAATACTCCGGCGGGAGTGCAGCTC TTCCCAAGAGCCCCTGAAATGCTCCGGCGGGAGTGCAGCTC Direct Gain 0 0.933521890554433 NA NA prediction 0.867043781108865 Functional Gain - IDO2 ENSG00000188676 CDS Human protein_coding chr8:39871152 chr8:39871152 nonsynonymous SNV 0.010 1 21 hm7G_associated_SNPs_40676 0 0 0 0 2 IDO2 chr8:39871232 5'GT 39871232 Upstream 81bp 37425 chr9 100767419 100767419 1 + A G SARC 100767419 + 100767399 100767439 41 GAGGTGGATGGTGTGGATGAAGAGGAGGAGGACGAAGGTGA GAGGTGGATGGTGTGGATGAGGAGGAGGAGGACGAAGGTGA Direct Gain 0 0.933519399196445 NA NA prediction 0.86703879839289 Functional Gain - ANP32B ENSG00000136938 CDS Human protein_coding chr9:100767419 chr9:100767419 synonymous SNV . 0 21 hm7G_associated_SNPs_40677 0 0 1 0 1 ANP32B chr9:100767435 5'GT 100767435 Upstream 17bp 37426 chr11 10794800 10794800 1 + A G STAD 10794800 + 10794780 10794820 41 AAGCAACAAAAGAGAAGAAAAGAGGTGGTGGTGGTGGACGG AAGCAACAAAAGAGAAGAAAGGAGGTGGTGGTGGTGGACGG Direct Gain 0 0.933518544766499 NA NA prediction 0.867037089532999 Functional Gain - CTR9 ENSG00000198730 CDS Human protein_coding chr11:10794800 chr11:10794800 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40678 0 0 1 0 1 CTR9 chr11:10794820 5'GT 10794820 Upstream 21bp 37427 chr10 22616891 22616891 1 + C G BLCA 22616891 + 22616871 22616911 41 CGTTATAGCTGCCAATGGCTCTAATGAAGATAGAGGAGAGG CGTTATAGCTGCCAATGGCTGTAATGAAGATAGAGGAGAGG Direct Gain 0 0.933469720541177 NA NA prediction 0.866939441082355 Functional Gain - BMI1;COMMD3-BMI1 ENSG00000168283;ENSG00000269897 CDS Human other chr10:22616891 chr10:22616891 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_40680 0 0 1 0 2 BMI1;COMMD3-BMI1 chr10:22616879 3'AG 22616879 Downstream 13bp 37428 chr10 22616891 22616891 1 + C G BLCA 22616891 + 22616871 22616911 41 CGTTATAGCTGCCAATGGCTCTAATGAAGATAGAGGAGAGG CGTTATAGCTGCCAATGGCTGTAATGAAGATAGAGGAGAGG Direct Gain 0 0.933469720541177 NA NA prediction 0.866939441082355 Functional Gain - BMI1;COMMD3-BMI1 ENSG00000168283;ENSG00000269897 CDS Human other chr10:22616891 chr10:22616891 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_40680 0 0 1 0 2 BMI1;COMMD3-BMI1 chr10:22616987 5'GT 22616987 Upstream 97bp 37429 chr5 157181018 157181018 1 + A G LUAD 157181018 + 157180998 157181038 41 GGCTGTTCCTCTAGGCACTTACTGATGTGGATGAGACCTAC GGCTGTTCCTCTAGGCACTTGCTGATGTGGATGAGACCTAC Direct Gain 0 0.933462944938112 NA NA prediction 0.866925889876224 Functional Gain - LSM11 ENSG00000155858 CDS Human protein_coding chr5:157181018 chr5:157181018 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_40681 0 0 1 0 1 LSM11 chr5:157181012 3'AG 157181012 Downstream 7bp 37430 chr1 38483411 38483411 1 + T G UCEC 38483411 + 38483391 38483431 41 TGAAAAAAATCCAGATGAATTCTACTACAAAATGACTCGGG TGAAAAAAATCCAGATGAATGCTACTACAAAATGACTCGGG Direct Gain 0 0.93344809099061 NA NA prediction 0.866896181981219 Functional Gain - UTP11 ENSG00000183520 CDS Human protein_coding chr1:38483411 chr1:38483411 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40683 0 0 1 1 2 UTP11 chr1:38483340 3'AG 38483340 Downstream 72bp 37431 chr1 38483411 38483411 1 + T G UCEC 38483411 + 38483391 38483431 41 TGAAAAAAATCCAGATGAATTCTACTACAAAATGACTCGGG TGAAAAAAATCCAGATGAATGCTACTACAAAATGACTCGGG Direct Gain 0 0.93344809099061 NA NA prediction 0.866896181981219 Functional Gain - UTP11 ENSG00000183520 CDS Human protein_coding chr1:38483411 chr1:38483411 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40683 0 0 1 1 2 UTP11 chr1:38483442 5'GT 38483442 Upstream 32bp 37432 chr8 145160829 145160829 1 + C G STAD 145160829 + 145160809 145160849 41 AAACACATGTTCAAGCAGTTCTGCCAGGAGGGCCAGCCCCA AAACACATGTTCAAGCAGTTGTGCCAGGAGGGCCAGCCCCA Direct Gain 0 0.933415524474695 NA NA prediction 0.866831048949389 Functional Gain - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145160829 chr8:145160829 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40685 0 0 1 0 2 MAF1 chr8:145160772 3'AG 145160772 Downstream 58bp 37433 chr8 145160829 145160829 1 + C G STAD 145160829 + 145160809 145160849 41 AAACACATGTTCAAGCAGTTCTGCCAGGAGGGCCAGCCCCA AAACACATGTTCAAGCAGTTGTGCCAGGAGGGCCAGCCCCA Direct Gain 0 0.933415524474695 NA NA prediction 0.866831048949389 Functional Gain - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145160829 chr8:145160829 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40685 0 0 1 0 2 MAF1 chr8:145160900 5'GT 145160900 Upstream 72bp 37434 chr1 52871462 52871462 1 + C G LUAD 52871462 + 52871442 52871482 41 CCTTGAAGATGCTTCAAATTCAACCCGAGAAGGATATCATT CCTTGAAGATGCTTCAAATTGAACCCGAGAAGGATATCATT Direct Gain 0 0.933414632799372 NA NA prediction 0.866829265598745 Functional Gain - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52871462 chr1:52871462 nonsynonymous SNV 0.283 2 21 hm7G_associated_SNPs_40686 0 0 1 0 1 PRPF38A chr1:52871511 5'GT 52871511 Upstream 50bp 37435 chr14 74495917 74495917 1 + A G LUAD 74495917 + 74495897 74495937 41 TGAAACAGCAATTAAATGAAACAAAGGAAAAAGCCCAAGAG TGAAACAGCAATTAAATGAAGCAAAGGAAAAAGCCCAAGAG Direct Gain 0 0.933378103489559 NA NA prediction 0.866756206979118 Functional Gain - BBOF1 ENSG00000119636 CDS Human protein_coding chr14:74495917 chr14:74495917 nonsynonymous SNV 0.991 0 21 hm7G_associated_SNPs_40688 0 0 0 0 2 BBOF1 chr14:74495887 3'AG 74495887 Downstream 31bp 37436 chr14 74495917 74495917 1 + A G LUAD 74495917 + 74495897 74495937 41 TGAAACAGCAATTAAATGAAACAAAGGAAAAAGCCCAAGAG TGAAACAGCAATTAAATGAAGCAAAGGAAAAAGCCCAAGAG Direct Gain 0 0.933378103489559 NA NA prediction 0.866756206979118 Functional Gain - BBOF1 ENSG00000119636 CDS Human protein_coding chr14:74495917 chr14:74495917 nonsynonymous SNV 0.991 0 21 hm7G_associated_SNPs_40688 0 0 0 0 2 BBOF1 chr14:74495952 5'GT 74495952 Upstream 36bp 37437 chr13 20242605 20242605 1 + C G BLCA 20242605 + 20242585 20242625 41 TTTTTCCAATCGCATGTCATCGACTCTGTGAGGGTCCAGAT TTTTTCCAATCGCATGTCATGGACTCTGTGAGGGTCCAGAT Direct Gain 0 0.933374898285844 NA NA prediction 0.866749796571688 Functional Gain - MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20242605 chr13:20242605 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40689 0 0 0 0 2 MPHOSPH8 chr13:20242517 3'AG 20242517 Downstream 89bp 37438 chr13 20242605 20242605 1 + C G BLCA 20242605 + 20242585 20242625 41 TTTTTCCAATCGCATGTCATCGACTCTGTGAGGGTCCAGAT TTTTTCCAATCGCATGTCATGGACTCTGTGAGGGTCCAGAT Direct Gain 0 0.933374898285844 NA NA prediction 0.866749796571688 Functional Gain - MPHOSPH8 ENSG00000196199 CDS Human protein_coding chr13:20242605 chr13:20242605 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40689 0 0 0 0 2 MPHOSPH8 chr13:20242671 5'GT 20242671 Upstream 67bp 37439 chr7 12680060 12680060 1 + A G rs35705332 12680060 + 12680040 12680080 41 TTACAAGAATGGAACATCAAAGAAAGGAGGTCAGGCACCTG TTACAAGAATGGAACATCAAGGAAAGGAGGTCAGGCACCTG Direct Gain 0 0.933347514330917 NA NA prediction 0.866695028661833 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12680060 chr7:12680060 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40690 0 0 0 0 2 SCIN chr7:12679972 3'AG 12679972 Downstream 89bp 37440 chr7 12680060 12680060 1 + A G rs35705332 12680060 + 12680040 12680080 41 TTACAAGAATGGAACATCAAAGAAAGGAGGTCAGGCACCTG TTACAAGAATGGAACATCAAGGAAAGGAGGTCAGGCACCTG Direct Gain 0 0.933347514330917 NA NA prediction 0.866695028661833 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12680060 chr7:12680060 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40690 0 0 0 0 2 SCIN chr7:12680142 5'GT 12680142 Upstream 83bp 37441 chr2 178081427 178081427 1 + T G UCEC 178081427 + 178081407 178081447 41 GTGGAGGTGGATCTGGCAATTTTATGGGTCGCGGAGGGAAC GTGGAGGTGGATCTGGCAATGTTATGGGTCGCGGAGGGAAC Direct Gain 0 0.933337956388684 NA NA prediction 0.866675912777368 Functional Gain - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178081427 chr2:178081427 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40691 0 0 1 0 1 HNRNPA3 chr2:178081499 5'GT 178081499 Upstream 73bp 37442 chr8 145535048 145535048 1 + C G BRCA 145535048 + 145535028 145535068 41 CTGGTGCAGTCAAACCGGATCCTGGGGGTGAAGAGAAAGAT CTGGTGCAGTCAAACCGGATGCTGGGGGTGAAGAGAAAGAT Direct Gain 0 0.933306274930096 NA NA prediction 0.866612549860193 Functional Gain - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535048 chr8:145535048 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40694 0 0 1 0 2 HSF1 chr8:145535007 3'AG 145535007 Downstream 42bp 37443 chr8 145535048 145535048 1 + C G BRCA 145535048 + 145535028 145535068 41 CTGGTGCAGTCAAACCGGATCCTGGGGGTGAAGAGAAAGAT CTGGTGCAGTCAAACCGGATGCTGGGGGTGAAGAGAAAGAT Direct Gain 0 0.933306274930096 NA NA prediction 0.866612549860193 Functional Gain - HSF1 ENSG00000185122 CDS Human protein_coding chr8:145535048 chr8:145535048 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40694 0 0 1 0 2 HSF1 chr8:145535068 5'GT 145535068 Upstream 21bp 37444 chr8 145160622 145160622 1 + C G CESC 145160622 + 145160602 145160642 41 AACTCGAGCTTTGAAGCCATCAACTCACAGCTGACTGTGGA AACTCGAGCTTTGAAGCCATGAACTCACAGCTGACTGTGGA Direct Gain 0 0.933246071623271 NA NA prediction 0.866492143246542 Functional Gain - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145160622 chr8:145160622 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40696 0 0 1 0 2 MAF1 chr8:145160543 3'AG 145160543 Downstream 80bp 37445 chr8 145160622 145160622 1 + C G CESC 145160622 + 145160602 145160642 41 AACTCGAGCTTTGAAGCCATCAACTCACAGCTGACTGTGGA AACTCGAGCTTTGAAGCCATGAACTCACAGCTGACTGTGGA Direct Gain 0 0.933246071623271 NA NA prediction 0.866492143246542 Functional Gain - MAF1 ENSG00000179632 CDS Human protein_coding chr8:145160622 chr8:145160622 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40696 0 0 1 0 2 MAF1 chr8:145160669 5'GT 145160669 Upstream 48bp 37446 chr17 41577392 41577392 1 + C G THCA 41577392 + 41577372 41577412 41 GCCAAAGAAAGGCGGGAACTCAAACAGGCCCAGCGGGAAGC GCCAAAGAAAGGCGGGAACTGAAACAGGCCCAGCGGGAAGC Direct Gain 0 0.933228720772485 NA NA prediction 0.866457441544969 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41577392 chr17:41577392 synonymous SNV . 0 21 hm7G_associated_SNPs_40697 0 0 1 0 2 DHX8 chr17:41577324 3'AG 41577324 Downstream 69bp 37447 chr17 41577392 41577392 1 + C G THCA 41577392 + 41577372 41577412 41 GCCAAAGAAAGGCGGGAACTCAAACAGGCCCAGCGGGAAGC GCCAAAGAAAGGCGGGAACTGAAACAGGCCCAGCGGGAAGC Direct Gain 0 0.933228720772485 NA NA prediction 0.866457441544969 Functional Gain - DHX8 ENSG00000067596 CDS Human protein_coding chr17:41577392 chr17:41577392 synonymous SNV . 0 21 hm7G_associated_SNPs_40697 0 0 1 0 2 DHX8 chr17:41577471 5'GT 41577471 Upstream 80bp 37448 chr14 62551020 62551020 1 + C G CESC 62551020 + 62551000 62551040 41 AGAGCTGTTGGTGGGGCTCTCGTACAATGCCACAACGGGGC AGAGCTGTTGGTGGGGCTCTGGTACAATGCCACAACGGGGC Direct Gain 0 0.933215746013874 NA NA prediction 0.866431492027748 Functional Gain - SYT16 ENSG00000139973 CDS Human protein_coding chr14:62551020 chr14:62551020 nonsynonymous SNV 0.987 2 21 hm7G_associated_SNPs_40699 0 0 1 0 1 SYT16 chr14:62551103 5'GT 62551103 Upstream 84bp 37449 chr8 42262979 42262979 1 + A G rs147177887 42262979 + 42262959 42262999 41 GGGATTTGAACTGGAAGCTTAATGTGGTTTGAGGAAAGCAT GGGATTTGAACTGGAAGCTTGATGTGGTTTGAGGAAAGCAT Direct Gain 0 0.933196544985026 NA NA prediction 0.866393089970053 Functional Gain - VDAC3 ENSG00000078668 CDS Human protein_coding chr8:42262979 chr8:42262979 synonymous SNV . 0 21 hm7G_associated_SNPs_40700 0 0 1 0 1 VDAC3 chr8:42262889 3'AG 42262889 Downstream 91bp 37450 chr11 89431659 89431659 1 + T G STAD 89431659 + 89431639 89431679 41 TATGATGCTCTGTTTGATATTGAAAGCAAAGTGGACCCTTC TATGATGCTCTGTTTGATATGGAAAGCAAAGTGGACCCTTC Direct Gain 0 0.933196508708095 NA NA prediction 0.866393017416189 Functional Gain - FOLH1B ENSG00000134612 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr11:89431659 chr11:89431659 . . 0 21 hm7G_associated_SNPs_40701 0 0 0 0 1 FOLH1B chr11:89431578 3'AG 89431578 Downstream 82bp 37451 chr20 44640803 44640803 1 + C G LUSC 44640803 + 44640783 44640823 41 GACGGTGATGGGGGGCAACTCGGCGGGGGAGCTGTGCGTCT GACGGTGATGGGGGGCAACTGGGCGGGGGAGCTGTGCGTCT Direct Gain 0 0.933174788161679 NA NA prediction 0.866349576323358 Functional Gain - MMP9 ENSG00000100985 CDS Human protein_coding chr20:44640803 chr20:44640803 nonsynonymous SNV 0.277 4 21 hm7G_associated_SNPs_40703 0 0 0 0 1 MMP9 chr20:44640776 3'AG 44640776 Downstream 28bp 37452 chr5 140081625 140081625 1 + A G THYM 140081625 + 140081605 140081645 41 CCTGTCAAGCGAGAGCTTTTACGGCATAGGGACTACAAGGT CCTGTCAAGCGAGAGCTTTTGCGGCATAGGGACTACAAGGT Direct Gain 0 0.93315414971205 NA NA prediction 0.8663082994241 Functional Gain - ZMAT2 ENSG00000146007 CDS Human protein_coding chr5:140081625 chr5:140081625 synonymous SNV . 0 21 hm7G_associated_SNPs_40705 0 0 1 0 1 ZMAT2 chr5:140081591 3'AG 140081591 Downstream 35bp 37453 chr5 33467669 33467669 1 + T G STAD 33467669 + 33467649 33467689 41 TGTGTGTTTGTTTTAGTTGTTGGTGAAAAAGAGAAAATCAG TGTGTGTTTGTTTTAGTTGTGGGTGAAAAAGAGAAAATCAG Direct Gain 0 0.93314833827542 NA NA prediction 0.86629667655084 Functional Gain - TARS ENSG00000113407 CDS Human protein_coding chr5:33467669 chr5:33467669 synonymous SNV . 0 21 hm7G_associated_SNPs_40706 0 0 1 0 1 TARS chr5:33467665 3'AG 33467665 Downstream 5bp 37454 chr12 72163584 72163584 1 + C G BLCA 72163584 + 72163564 72163604 41 TTATTTCTCTTTTTAGGCATCATTCTTAACAAAGAAGTTAA TTATTTCTCTTTTTAGGCATGATTCTTAACAAAGAAGTTAA Direct Gain 0 0.933144087061884 NA NA prediction 0.866288174123768 Functional Gain - RAB21 ENSG00000080371 CDS Human protein_coding chr12:72163584 chr12:72163584 stopgain 1.000 1 21 hm7G_associated_SNPs_40707 0 0 0 0 2 RAB21 chr12:72163580 3'AG 72163580 Downstream 5bp 37455 chr12 72163584 72163584 1 + C G BLCA 72163584 + 72163564 72163604 41 TTATTTCTCTTTTTAGGCATCATTCTTAACAAAGAAGTTAA TTATTTCTCTTTTTAGGCATGATTCTTAACAAAGAAGTTAA Direct Gain 0 0.933144087061884 NA NA prediction 0.866288174123768 Functional Gain - RAB21 ENSG00000080371 CDS Human protein_coding chr12:72163584 chr12:72163584 stopgain 1.000 1 21 hm7G_associated_SNPs_40707 0 0 0 0 2 RAB21 chr12:72163639 5'GT 72163639 Upstream 56bp 37456 chr12 95663849 95663849 1 + A G LUAD 95663849 + 95663829 95663869 41 TCAGTGCTGCTTGCCCATTTAATAAAGCTGGACAGCATCCA TCAGTGCTGCTTGCCCATTTGATAAAGCTGGACAGCATCCA Direct Gain 0 0.933141748336253 NA NA prediction 0.866283496672506 Functional Gain - VEZT ENSG00000028203 CDS Human protein_coding chr12:95663849 chr12:95663849 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40708 0 0 1 0 2 VEZT chr12:95663815 3'AG 95663815 Downstream 35bp 37457 chr12 95663849 95663849 1 + A G LUAD 95663849 + 95663829 95663869 41 TCAGTGCTGCTTGCCCATTTAATAAAGCTGGACAGCATCCA TCAGTGCTGCTTGCCCATTTGATAAAGCTGGACAGCATCCA Direct Gain 0 0.933141748336253 NA NA prediction 0.866283496672506 Functional Gain - VEZT ENSG00000028203 CDS Human protein_coding chr12:95663849 chr12:95663849 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40708 0 0 1 0 2 VEZT chr12:95663827 3'AG 95663827 Downstream 23bp 37458 chr5 147803564 147803564 1 + T G OV 147803564 + 147803544 147803584 41 GTATATTTTCGTTGAAGCATTAAATGAGATGGAAGACATCG GTATATTTTCGTTGAAGCATGAAATGAGATGGAAGACATCG Direct Gain 0 0.933138119142647 NA NA prediction 0.866276238285294 Functional Gain - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147803564 chr5:147803564 stopgain 0.991 0 21 hm7G_associated_SNPs_40709 0 0 1 0 1 FBXO38 chr5:147803561 3'AG 147803561 Downstream 4bp 37459 chr22 32487698 32487698 1 + A G LIHC 32487698 + 32487678 32487718 41 CCTCTTCACCATGGACATCTACGCCAAGGTCCGCAAGAGAG CCTCTTCACCATGGACATCTGCGCCAAGGTCCGCAAGAGAG Direct Gain 0 0.933118670829704 NA NA prediction 0.866237341659407 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32487698 chr22:32487698 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_40711 0 0 0 0 2 SLC5A1 chr22:32487599 3'AG 32487599 Downstream 100bp 37460 chr22 32487698 32487698 1 + A G LIHC 32487698 + 32487678 32487718 41 CCTCTTCACCATGGACATCTACGCCAAGGTCCGCAAGAGAG CCTCTTCACCATGGACATCTGCGCCAAGGTCCGCAAGAGAG Direct Gain 0 0.933118670829704 NA NA prediction 0.866237341659407 Functional Gain - SLC5A1 ENSG00000100170 CDS Human protein_coding chr22:32487698 chr22:32487698 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_40711 0 0 0 0 2 SLC5A1 chr22:32487749 5'GT 32487749 Upstream 52bp 37461 chr7 89793829 89793829 1 + A G UCEC 89793829 + 89793809 89793849 41 TCCCTTCTACTGGGCACAATACACGCATTGATTTTTGCCTG TCCCTTCTACTGGGCACAATGCACGCATTGATTTTTGCCTG Direct Gain 0 0.933104515227209 NA NA prediction 0.866209030454417 Functional Gain - STEAP1 ENSG00000164647 CDS Human protein_coding chr7:89793829 chr7:89793829 nonsynonymous SNV 0.958 0 21 hm7G_associated_SNPs_40714 0 0 1 0 1 STEAP1 chr7:89793791 3'AG 89793791 Downstream 39bp 37462 chr21 42812836 42812836 1 + A G COAD 42812836 + 42812816 42812856 41 CAAGACACTCATCAAGAAGTACATCCAGAGGCAGGAGACAA CAAGACACTCATCAAGAAGTGCATCCAGAGGCAGGAGACAA Direct Gain 0 0.933103304852878 NA NA prediction 0.866206609705756 Functional Gain - MX1 ENSG00000157601 CDS Human protein_coding chr21:42812836 chr21:42812836 nonsynonymous SNV 0.893 5 21 hm7G_associated_SNPs_40715 0 0 0 0 1 MX1 chr21:42812814 3'AG 42812814 Downstream 23bp 37463 chr4 184366710 184366710 1 + A G KIRC 184366710 + 184366690 184366730 41 ACCCTCAAAAAGTTATGGATAAAATACTTAGTATGGCTGAA ACCCTCAAAAAGTTATGGATGAAATACTTAGTATGGCTGAA Direct Gain 0 0.933068576297525 NA NA prediction 0.86613715259505 Functional Gain - CDKN2AIP ENSG00000168564 CDS Human protein_coding chr4:184366710 chr4:184366710 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40717 0 0 1 0 2 CDKN2AIP chr4:184366688 3'AG 184366688 Downstream 23bp 37464 chr4 184366710 184366710 1 + A G KIRC 184366710 + 184366690 184366730 41 ACCCTCAAAAAGTTATGGATAAAATACTTAGTATGGCTGAA ACCCTCAAAAAGTTATGGATGAAATACTTAGTATGGCTGAA Direct Gain 0 0.933068576297525 NA NA prediction 0.86613715259505 Functional Gain - CDKN2AIP ENSG00000168564 CDS Human protein_coding chr4:184366710 chr4:184366710 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40717 0 0 1 0 2 CDKN2AIP chr4:184366787 5'GT 184366787 Upstream 78bp 37465 chr15 44705563 44705563 1 + C G LGG 44705563 + 44705543 44705583 41 AACGAGAGCTTCAAATGGATCCTGCAGACTATGGAAAGCAA AACGAGAGCTTCAAATGGATGCTGCAGACTATGGAAAGCAA Direct Gain 0 0.933053193184496 NA NA prediction 0.866106386368992 Functional Gain - CASC4 ENSG00000166734 CDS Human protein_coding chr15:44705563 chr15:44705563 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40719 0 0 1 0 1 CASC4 chr15:44705534 3'AG 44705534 Downstream 30bp 37466 chr11 30354447 30354447 1 + T G UCEC 30354447 + 30354427 30354467 41 AGCTTTGAGGTCATTACAATTTACGAATCCAGGAAGGCAAA AGCTTTGAGGTCATTACAATGTACGAATCCAGGAAGGCAAA Direct Gain 0 0.933016202880638 NA NA prediction 0.866032405761276 Functional Gain - ARL14EP ENSG00000152219 CDS Human protein_coding chr11:30354447 chr11:30354447 nonsynonymous SNV 0.930 3 21 hm7G_associated_SNPs_40720 0 0 1 0 2 ARL14EP chr11:30354413 3'AG 30354413 Downstream 35bp 37467 chr11 30354447 30354447 1 + T G UCEC 30354447 + 30354427 30354467 41 AGCTTTGAGGTCATTACAATTTACGAATCCAGGAAGGCAAA AGCTTTGAGGTCATTACAATGTACGAATCCAGGAAGGCAAA Direct Gain 0 0.933016202880638 NA NA prediction 0.866032405761276 Functional Gain - ARL14EP ENSG00000152219 CDS Human protein_coding chr11:30354447 chr11:30354447 nonsynonymous SNV 0.930 3 21 hm7G_associated_SNPs_40720 0 0 1 0 2 ARL14EP chr11:30354540 5'GT 30354540 Upstream 94bp 37468 chr3 161216964 161216964 1 + A G BLCA 161216964 + 161216944 161216984 41 AAATCCCATTTCTAGGTCCTAAAGGAGAGGCTGGAAATTTG AAATCCCATTTCTAGGTCCTGAAGGAGAGGCTGGAAATTTG Direct Gain 0 0.933004811272493 NA NA prediction 0.866009622544986 Functional Gain - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161216964 chr3:161216964 nonsynonymous SNV 0.984 4 21 hm7G_associated_SNPs_40722 0 0 0 0 2 OTOL1 chr3:161216959 3'AG 161216959 Downstream 6bp 37469 chr3 161216964 161216964 1 + A G BLCA 161216964 + 161216944 161216984 41 AAATCCCATTTCTAGGTCCTAAAGGAGAGGCTGGAAATTTG AAATCCCATTTCTAGGTCCTGAAGGAGAGGCTGGAAATTTG Direct Gain 0 0.933004811272493 NA NA prediction 0.866009622544986 Functional Gain - OTOL1 ENSG00000182447 CDS Human protein_coding chr3:161216964 chr3:161216964 nonsynonymous SNV 0.984 4 21 hm7G_associated_SNPs_40722 0 0 0 0 2 OTOL1 chr3:161217048 5'GT 161217048 Upstream 85bp 37470 chr12 85677403 85677403 1 + A G rs559747219 85677403 + 85677383 85677423 41 CCCTTCACACCGAACTGAATAGAGCTATGGACAACTGTAAC CCCTTCACACCGAACTGAATGGAGCTATGGACAACTGTAAC Direct Gain 0 0.933004050115942 NA NA prediction 0.866008100231884 Functional Gain - ALX1 ENSG00000180318 CDS Human protein_coding chr12:85677403 chr12:85677403 nonsynonymous SNV 0.949 3 21 hm7G_associated_SNPs_40723 0 0 1 0 1 ALX1 chr12:85677350 3'AG 85677350 Downstream 54bp 37471 chr16 10861882 10861882 1 + A G UCEC 10861882 + 10861862 10861902 41 ACGTTAGCCTACAGAAGTATAATTCAGAGTAAGTATTTCCA ACGTTAGCCTACAGAAGTATGATTCAGAGTAAGTATTTCCA Direct Gain 0 0.932987937486536 NA NA prediction 0.865975874973073 Functional Gain - NUBP1 ENSG00000103274 CDS Human protein_coding chr16:10861882 chr16:10861882 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40725 0 0 1 0 1 NUBP1 chr16:10861806 3'AG 10861806 Downstream 77bp 37472 chr15 65847227 65847227 1 + C G HNSC 65847227 + 65847207 65847247 41 ACATTTCTTTCTTTATAGCTCAAGGACATGGTGCCAAAGGA ACATTTCTTTCTTTATAGCTGAAGGACATGGTGCCAAAGGA Direct Gain 0 0.932950127109443 NA NA prediction 0.865900254218885 Functional Gain - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65847227 chr15:65847227 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_40726 0 0 1 6 2 HACD3 chr15:65847225 3'AG 65847225 Downstream 3bp 37473 chr15 65847227 65847227 1 + C G HNSC 65847227 + 65847207 65847247 41 ACATTTCTTTCTTTATAGCTCAAGGACATGGTGCCAAAGGA ACATTTCTTTCTTTATAGCTGAAGGACATGGTGCCAAAGGA Direct Gain 0 0.932950127109443 NA NA prediction 0.865900254218885 Functional Gain - HACD3 ENSG00000074696 CDS Human protein_coding chr15:65847227 chr15:65847227 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_40726 0 0 1 6 2 HACD3 chr15:65847298 5'GT 65847298 Upstream 72bp 37474 chr1 24976564 24976564 1 + C G LUSC 24976564 + 24976544 24976584 41 GAGAAAAAAGGGAGCGGTCTCGTAGCCCAAGAAGGTATCAT GAGAAAAAAGGGAGCGGTCTGGTAGCCCAAGAAGGTATCAT Direct Gain 0 0.932892244292205 NA NA prediction 0.865784488584409 Functional Gain - SRRM1 ENSG00000133226 CDS Human protein_coding chr1:24976564 chr1:24976564 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_40729 0 0 1 0 1 SRRM1 chr1:24976577 5'GT 24976577 Upstream 14bp 37475 chr12 56076006 56076006 1 + C G rs116592765 56076006 + 56075986 56076026 41 GTGCAGAGCCCAAGGAAGGTCCTGCAGGAGGTCCGGAGAGT GTGCAGAGCCCAAGGAAGGTGCTGCAGGAGGTCCGGAGAGT Direct Gain 0 0.932887051440973 NA NA prediction 0.865774102881946 Functional Gain - METTL7B ENSG00000170439 CDS Human protein_coding chr12:56076006 chr12:56076006 synonymous SNV . 0 21 hm7G_associated_SNPs_40730 0 0 1 0 1 METTL7B chr12:56076036 5'GT 56076036 Upstream 31bp 37476 chr22 39078977 39078977 1 + A G ESCA 39078977 + 39078957 39078997 41 GAGAAGTTGCAAATGGAGCAACAGCAGCAACTGCAGCAGCG GAGAAGTTGCAAATGGAGCAGCAGCAGCAACTGCAGCAGCG Direct Gain 0 0.932823260865157 NA NA prediction 0.865646521730313 Functional Gain - TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078977 chr22:39078977 synonymous SNV . 0 21 hm7G_associated_SNPs_40732 0 0 1 0 2 TOMM22 chr22:39078884 3'AG 39078884 Downstream 94bp 37477 chr22 39078977 39078977 1 + A G ESCA 39078977 + 39078957 39078997 41 GAGAAGTTGCAAATGGAGCAACAGCAGCAACTGCAGCAGCG GAGAAGTTGCAAATGGAGCAGCAGCAGCAACTGCAGCAGCG Direct Gain 0 0.932823260865157 NA NA prediction 0.865646521730313 Functional Gain - TOMM22 ENSG00000100216 CDS Human protein_coding chr22:39078977 chr22:39078977 synonymous SNV . 0 21 hm7G_associated_SNPs_40732 0 0 1 0 2 TOMM22 chr22:39079001 5'GT 39079001 Upstream 25bp 37478 chr3 191078907 191078907 1 + A G BLCA 191078907 + 191078887 191078927 41 AAATTCAGGAGAAGCTGGCTATTGAGGCAGAGAGACGACGC AAATTCAGGAGAAGCTGGCTGTTGAGGCAGAGAGACGACGC Direct Gain 0 0.932822855015665 NA NA prediction 0.865645710031329 Functional Gain - CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191078907 chr3:191078907 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40733 0 0 1 0 2 CCDC50 chr3:191078858 3'AG 191078858 Downstream 50bp 37479 chr3 191078907 191078907 1 + A G BLCA 191078907 + 191078887 191078927 41 AAATTCAGGAGAAGCTGGCTATTGAGGCAGAGAGACGACGC AAATTCAGGAGAAGCTGGCTGTTGAGGCAGAGAGACGACGC Direct Gain 0 0.932822855015665 NA NA prediction 0.865645710031329 Functional Gain - CCDC50 ENSG00000152492 CDS Human protein_coding chr3:191078907 chr3:191078907 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40733 0 0 1 0 2 CCDC50 chr3:191078948 5'GT 191078948 Upstream 42bp 37480 chr5 157160017 157160017 1 + C G LUAD 157160017 + 157159997 157160037 41 GATGAGTACAGCTTTGTGTTCAAGCGGAAAACCAATTGGTT GATGAGTACAGCTTTGTGTTGAAGCGGAAAACCAATTGGTT Direct Gain 0 0.932804640600299 NA NA prediction 0.865609281200598 Functional Gain - THG1L ENSG00000113272;ENSG00000268432 CDS Human protein_coding chr5:157160017 chr5:157160017 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40734 0 0 1 0 1 THG1L chr5:157160052 5'GT 157160052 Upstream 36bp 37481 chr20 57896098 57896098 1 + A G SKCM 57896098 + 57896078 57896118 41 GGTGCCCTATGGACTGTCCAACTACAGAGGAAGCTTCCGGG GGTGCCCTATGGACTGTCCAGCTACAGAGGAAGCTTCCGGG Direct Gain 0 0.932796324054295 NA NA prediction 0.86559264810859 Functional Gain - EDN3 ENSG00000124205 CDS Human protein_coding chr20:57896098 chr20:57896098 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40735 0 0 0 0 1 EDN3 chr20:57896072 3'AG 57896072 Downstream 27bp 37482 chr3 14746055 14746055 1 + C G BLCA 14746055 + 14746035 14746075 41 ATCATTTCAGTCAGCATTGTCAAGAGGGGAAGGCACCCAAG ATCATTTCAGTCAGCATTGTGAAGAGGGGAAGGCACCCAAG Direct Gain 0 0.932770833593148 NA NA prediction 0.865541667186297 Functional Gain - C3orf20 ENSG00000131379 CDS Human protein_coding chr3:14746055 chr3:14746055 nonsynonymous SNV 0.532 0 21 hm7G_associated_SNPs_40738 0 0 0 0 1 C3orf20 chr3:14745990 3'AG 14745990 Downstream 66bp 37483 chr5 156890271 156890271 1 + C G LUAD 156890271 + 156890251 156890291 41 GCATTCCTGTCTAGCTTCCTCATCGGCAGCAGCGTCATCCT GCATTCCTGTCTAGCTTCCTGATCGGCAGCAGCGTCATCCT Direct Gain 0 0.932700659261673 NA NA prediction 0.865401318523346 Functional Gain - NIPAL4 ENSG00000172548 CDS Human protein_coding chr5:156890271 chr5:156890271 stopgain . 0 21 hm7G_associated_SNPs_40740 0 0 0 0 1 NIPAL4 chr5:156890341 5'GT 156890341 Upstream 71bp 37484 chr8 55055253 55055253 1 + A G READ 55055253 + 55055233 55055273 41 CCTTTACGGCAAAAGTTAATATTGAAGTACAGTTGGCTTCA CCTTTACGGCAAAAGTTAATGTTGAAGTACAGTTGGCTTCA Direct Gain 0 0.932687107716687 NA NA prediction 0.865374215433374 Functional Gain - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55055253 chr8:55055253 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_40741 0 0 1 0 1 MRPL15 chr8:55055346 5'GT 55055346 Upstream 94bp 37485 chr2 89037541 89037541 1 + T G KIRP 89037541 + 89037521 89037561 41 TTTATCTTGGACTGGAAGTTTGACCGGGTACACAAATGGAG TTTATCTTGGACTGGAAGTTGGACCGGGTACACAAATGGAG Direct Gain 0 0.932680501236799 NA NA prediction 0.865361002473599 Functional Gain - RPIA ENSG00000153574 CDS Human protein_coding chr2:89037541 chr2:89037541 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40742 0 0 1 0 1 RPIA chr2:89037593 5'GT 89037593 Upstream 53bp 37486 chr7 77365791 77365791 1 + A G UCEC 77365791 + 77365771 77365811 41 AGAGAAAAAAAGAAACATAAAGTAATGAATGAGATCAAGAA AGAGAAAAAAAGAAACATAAGGTAATGAATGAGATCAAGAA Direct Gain 0 0.932672770282364 NA NA prediction 0.865345540564728 Functional Gain - RSBN1L ENSG00000187257 CDS Human protein_coding chr7:77365791 chr7:77365791 synonymous SNV . 0 21 hm7G_associated_SNPs_40743 0 0 1 0 2 RSBN1L chr7:77365727 3'AG 77365727 Downstream 65bp 37487 chr7 77365791 77365791 1 + A G UCEC 77365791 + 77365771 77365811 41 AGAGAAAAAAAGAAACATAAAGTAATGAATGAGATCAAGAA AGAGAAAAAAAGAAACATAAGGTAATGAATGAGATCAAGAA Direct Gain 0 0.932672770282364 NA NA prediction 0.865345540564728 Functional Gain - RSBN1L ENSG00000187257 CDS Human protein_coding chr7:77365791 chr7:77365791 synonymous SNV . 0 21 hm7G_associated_SNPs_40743 0 0 1 0 2 RSBN1L chr7:77365843 5'GT 77365843 Upstream 53bp 37488 chr16 23581875 23581875 1 + C G BLCA 23581875 + 23581855 23581895 41 ACTCAATATGTGGATGCAATCAAAGACACTGTGCTGGGGAA ACTCAATATGTGGATGCAATGAAAGACACTGTGCTGGGGAA Direct Gain 0 0.93266679780087 NA NA prediction 0.86533359560174 Functional Gain - UBFD1 ENSG00000103353 CDS Human protein_coding chr16:23581875 chr16:23581875 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40745 0 0 1 0 1 UBFD1 chr16:23581801 3'AG 23581801 Downstream 75bp 37489 chr2 44531284 44531284 1 + T G MESO 44531284 + 44531264 44531304 41 CCTTGTCAACTCTTATAGGTTCATGGGGACTGAAGCCTATG CCTTGTCAACTCTTATAGGTGCATGGGGACTGAAGCCTATG Direct Gain 0 0.932656668262756 NA NA prediction 0.865313336525513 Functional Gain - SLC3A1 ENSG00000138079 CDS Human protein_coding chr2:44531284 chr2:44531284 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_40746 0 0 0 0 1 SLC3A1 chr2:44531282 3'AG 44531282 Downstream 3bp 37490 chr11 111404477 111404477 1 + A G STAD 111404477 + 111404457 111404497 41 CTTTCTTTAAACAGGCTAAAACAAGAGAAGAGATTCTCCAA CTTTCTTTAAACAGGCTAAAGCAAGAGAAGAGATTCTCCAA Direct Gain 0 0.932619232274412 NA NA prediction 0.865238464548824 Functional Gain - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111404477 chr11:111404477 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_40749 0 0 0 0 2 C11orf88 chr11:111404471 3'AG 111404471 Downstream 7bp 37491 chr11 111404477 111404477 1 + A G STAD 111404477 + 111404457 111404497 41 CTTTCTTTAAACAGGCTAAAACAAGAGAAGAGATTCTCCAA CTTTCTTTAAACAGGCTAAAGCAAGAGAAGAGATTCTCCAA Direct Gain 0 0.932619232274412 NA NA prediction 0.865238464548824 Functional Gain - C11orf88 ENSG00000183644 CDS Human protein_coding chr11:111404477 chr11:111404477 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_40749 0 0 0 0 2 C11orf88 chr11:111404530 5'GT 111404530 Upstream 54bp 37492 chr3 129249791 129249791 1 + A G UCEC 129249791 + 129249771 129249811 41 GGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACC GGTGTGTAAGCCCATGAGCAGCTTCCGCTTCGGGGAGAACC Direct Gain 0 0.93261618337146 NA NA prediction 0.86523236674292 Functional Gain - RHO ENSG00000163914 CDS Human protein_coding chr3:129249791 chr3:129249791 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40750 0 0 0 0 2 RHO chr3:129249719 3'AG 129249719 Downstream 73bp 37493 chr3 129249791 129249791 1 + A G UCEC 129249791 + 129249771 129249811 41 GGTGTGTAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACC GGTGTGTAAGCCCATGAGCAGCTTCCGCTTCGGGGAGAACC Direct Gain 0 0.93261618337146 NA NA prediction 0.86523236674292 Functional Gain - RHO ENSG00000163914 CDS Human protein_coding chr3:129249791 chr3:129249791 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40750 0 0 0 0 2 RHO chr3:129249887 5'GT 129249887 Upstream 97bp 37494 chr10 70930917 70930917 1 + A G BLCA 70930917 + 70930897 70930937 41 GCATTTGTTTACTAGGAGATAATTTTATGGAGAAAAGCTCC GCATTTGTTTACTAGGAGATGATTTTATGGAGAAAAGCTCC Direct Gain 0 0.932614392914562 NA NA prediction 0.865228785829124 Functional Gain - VPS26A ENSG00000122958 CDS Human protein_coding chr10:70930917 chr10:70930917 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_40751 0 0 1 0 1 VPS26A chr10:70930912 3'AG 70930912 Downstream 6bp 37495 chr3 183896816 183896816 1 + C G ESCA 183896816 + 183896796 183896836 41 GCCATGGTCTTCGAATTCCTCTATAAGATGTGTGACGTGAT GCCATGGTCTTCGAATTCCTGTATAAGATGTGTGACGTGAT Direct Gain 0 0.932604860018663 NA NA prediction 0.865209720037327 Functional Gain - AP2M1 ENSG00000161203 CDS Human protein_coding chr3:183896816 chr3:183896816 synonymous SNV . 0 21 hm7G_associated_SNPs_40754 0 0 1 0 1 AP2M1 chr3:183896910 5'GT 183896910 Upstream 95bp 37496 chr2 158980318 158980318 1 + A G UCEC 158980318 + 158980298 158980338 41 CAGAGAAAAAAAGTTAGACTACTTGAAGAGAGCATTTAAAG CAGAGAAAAAAAGTTAGACTGCTTGAAGAGAGCATTTAAAG Direct Gain 0 0.932536440361308 NA NA prediction 0.865072880722616 Functional Gain - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158980318 chr2:158980318 nonsynonymous SNV 0.451 4 21 hm7G_associated_SNPs_40755 0 0 0 0 2 UPP2 chr2:158980261 3'AG 158980261 Downstream 58bp 37497 chr2 158980318 158980318 1 + A G UCEC 158980318 + 158980298 158980338 41 CAGAGAAAAAAAGTTAGACTACTTGAAGAGAGCATTTAAAG CAGAGAAAAAAAGTTAGACTGCTTGAAGAGAGCATTTAAAG Direct Gain 0 0.932536440361308 NA NA prediction 0.865072880722616 Functional Gain - UPP2 ENSG00000007001 CDS Human protein_coding chr2:158980318 chr2:158980318 nonsynonymous SNV 0.451 4 21 hm7G_associated_SNPs_40755 0 0 0 0 2 UPP2 chr2:158980407 5'GT 158980407 Upstream 90bp 37498 chr17 3379514 3379514 1 + C G BLCA 3379514 + 3379494 3379534 41 TTGCTATCTTTGGAGGAACCCATGGGAATGAGCTAACCGGA TTGCTATCTTTGGAGGAACCGATGGGAATGAGCTAACCGGA Direct Gain 0 0.932514637827165 NA NA prediction 0.86502927565433 Functional Gain - ASPA ENSG00000108381 CDS Human protein_coding chr17:3379514 chr17:3379514 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40756 0 0 0 0 1 ASPA chr17:3379428 3'AG 3379428 Downstream 87bp 37499 chr9 35733434 35733434 1 + A G rs149239671 35733434 + 35733414 35733454 41 ACAGATGAGGAGAAGAGTCTATTGGAGAAGGAGGGGCTTAT ACAGATGAGGAGAAGAGTCTGTTGGAGAAGGAGGGGCTTAT Direct Gain 0 0.932496904774552 NA NA prediction 0.864993809549105 Functional Gain - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733434 chr9:35733434 synonymous SNV . 0 21 hm7G_associated_SNPs_40757 0 0 1 0 2 CREB3 chr9:35733393 3'AG 35733393 Downstream 42bp 37500 chr9 35733434 35733434 1 + A G rs149239671 35733434 + 35733414 35733454 41 ACAGATGAGGAGAAGAGTCTATTGGAGAAGGAGGGGCTTAT ACAGATGAGGAGAAGAGTCTGTTGGAGAAGGAGGGGCTTAT Direct Gain 0 0.932496904774552 NA NA prediction 0.864993809549105 Functional Gain - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35733434 chr9:35733434 synonymous SNV . 0 21 hm7G_associated_SNPs_40757 0 0 1 0 2 CREB3 chr9:35733482 5'GT 35733482 Upstream 49bp 37501 chr10 70101390 70101390 1 + C G BLCA 70101390 + 70101370 70101410 41 TTCTACTCCTGGAGGCGGCTCTGGCATGGGAGGTTCTGGAA TTCTACTCCTGGAGGCGGCTGTGGCATGGGAGGTTCTGGAA Direct Gain 0 0.932493363981717 NA NA prediction 0.864986727963435 Functional Gain - HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70101390 chr10:70101390 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_40758 0 0 1 0 2 HNRNPH3 chr10:70101342 3'AG 70101342 Downstream 49bp 37502 chr10 70101390 70101390 1 + C G BLCA 70101390 + 70101370 70101410 41 TTCTACTCCTGGAGGCGGCTCTGGCATGGGAGGTTCTGGAA TTCTACTCCTGGAGGCGGCTGTGGCATGGGAGGTTCTGGAA Direct Gain 0 0.932493363981717 NA NA prediction 0.864986727963435 Functional Gain - HNRNPH3 ENSG00000096746 CDS Human protein_coding chr10:70101390 chr10:70101390 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_40758 0 0 1 0 2 HNRNPH3 chr10:70101437 5'GT 70101437 Upstream 48bp 37503 chr11 67048965 67048965 1 + A G LIHC 67048965 + 67048945 67048985 41 CCTGGACAAAAAGCGCATCAAGATGAAGCAGGGGGAGACCC CCTGGACAAAAAGCGCATCAGGATGAAGCAGGGGGAGACCC Direct Gain 0 0.932482876951704 NA NA prediction 0.864965753903408 Functional Gain - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67048965 chr11:67048965 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40759 0 0 1 0 2 GRK2 chr11:67048930 3'AG 67048930 Downstream 36bp 37504 chr11 67048965 67048965 1 + A G LIHC 67048965 + 67048945 67048985 41 CCTGGACAAAAAGCGCATCAAGATGAAGCAGGGGGAGACCC CCTGGACAAAAAGCGCATCAGGATGAAGCAGGGGGAGACCC Direct Gain 0 0.932482876951704 NA NA prediction 0.864965753903408 Functional Gain - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67048965 chr11:67048965 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40759 0 0 1 0 2 GRK2 chr11:67049029 5'GT 67049029 Upstream 65bp 37505 chr22 37455372 37455372 1 + C G BLCA 37455372 + 37455352 37455392 41 GCTGGTGAACATCGGCTCCTCCTACAACTACGGCAGCGAGG GCTGGTGAACATCGGCTCCTGCTACAACTACGGCAGCGAGG Direct Gain 0 0.93247133245201 NA NA prediction 0.864942664904019 Functional Gain - KCTD17 ENSG00000100379 CDS Human protein_coding chr22:37455372 chr22:37455372 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_40761 0 0 1 0 1 KCTD17 chr22:37455353 3'AG 37455353 Downstream 20bp 37506 chr11 113857299 113857299 1 + C G rs79779791 113857299 + 113857279 113857319 41 CTGCTACTGCCCAGCATCTTCCTCATGGTCATGGACATCGT CTGCTACTGCCCAGCATCTTGCTCATGGTCATGGACATCGT Direct Gain 0 0.932458454723254 NA NA prediction 0.864916909446509 Functional Gain - HTR3A ENSG00000166736 CDS Human protein_coding chr11:113857299 chr11:113857299 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_40763 0 0 0 0 1 HTR3A chr11:113857240 3'AG 113857240 Downstream 60bp 37507 chr6 149901803 149901803 1 + T G STAD 149901803 + 149901783 149901823 41 CCACTGTAGATGAAGATGTTTTACCTGGCAAGTTACCTGAA CCACTGTAGATGAAGATGTTGTACCTGGCAAGTTACCTGAA Direct Gain 0 0.932416962423255 NA NA prediction 0.86483392484651 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149901803 chr6:149901803 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_40765 0 0 1 0 2 GINM1 chr6:149901729 3'AG 149901729 Downstream 75bp 37508 chr6 149901803 149901803 1 + T G STAD 149901803 + 149901783 149901823 41 CCACTGTAGATGAAGATGTTTTACCTGGCAAGTTACCTGAA CCACTGTAGATGAAGATGTTGTACCTGGCAAGTTACCTGAA Direct Gain 0 0.932416962423255 NA NA prediction 0.86483392484651 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149901803 chr6:149901803 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_40765 0 0 1 0 2 GINM1 chr6:149901859 5'GT 149901859 Upstream 57bp 37509 chr9 80921272 80921272 1 + C G ESCA 80921272 + 80921252 80921292 41 GAACCTCAACCCAGATGCCTCCTACGTGTATTATTGCGCAA GAACCTCAACCCAGATGCCTGCTACGTGTATTATTGCGCAA Direct Gain 0 0.93240346280824 NA NA prediction 0.86480692561648 Functional Gain - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80921272 chr9:80921272 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_40766 0 0 1 0 1 PSAT1 chr9:80921230 3'AG 80921230 Downstream 43bp 37510 chr7 56126388 56126388 1 + A G LUAD 56126388 + 56126368 56126408 41 GCAGAGCTAAAAGGAGAAATATGGAGAGGTATCCGAGTAAT GCAGAGCTAAAAGGAGAAATGTGGAGAGGTATCCGAGTAAT Direct Gain 0 0.932399483230738 NA NA prediction 0.864798966461476 Functional Gain - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56126388 chr7:56126388 nonsynonymous SNV 0.969 3 21 hm7G_associated_SNPs_40767 0 0 1 0 2 CCT6A chr7:56126313 3'AG 56126313 Downstream 76bp 37511 chr7 56126388 56126388 1 + A G LUAD 56126388 + 56126368 56126408 41 GCAGAGCTAAAAGGAGAAATATGGAGAGGTATCCGAGTAAT GCAGAGCTAAAAGGAGAAATGTGGAGAGGTATCCGAGTAAT Direct Gain 0 0.932399483230738 NA NA prediction 0.864798966461476 Functional Gain - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56126388 chr7:56126388 nonsynonymous SNV 0.969 3 21 hm7G_associated_SNPs_40767 0 0 1 0 2 CCT6A chr7:56126395 5'GT 56126395 Upstream 8bp 37512 chr8 41478447 41478447 1 + C G rs143006137 41478447 + 41478427 41478467 41 GAGGGAGAAGGTGAAGGACACGTTCAAGGAGGAGCAGCAGA GAGGGAGAAGGTGAAGGACAGGTTCAAGGAGGAGCAGCAGA Direct Gain 0 0.93233648263428 NA NA prediction 0.864672965268559 Functional Gain - GPAT4 ENSG00000158669 CDS Human protein_coding chr8:41478447 chr8:41478447 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_40769 0 0 1 0 1 GPAT4 chr8:41478412 3'AG 41478412 Downstream 36bp 37513 chr12 7923049 7923049 1 + T G UCEC 7923049 + 7923029 7923069 41 TTGTAGATAAGTCAATGGTTTTGTAAAACGAGGAAGAAATA TTGTAGATAAGTCAATGGTTGTGTAAAACGAGGAAGAAATA Direct Gain 0 0.932313612935782 NA NA prediction 0.864627225871563 Functional Gain - NANOGNB ENSG00000205857 CDS Human protein_coding chr12:7923049 chr12:7923049 nonsynonymous SNV 0.406 4 21 hm7G_associated_SNPs_40770 0 0 0 0 2 NANOGNB chr12:7923035 3'AG 7923035 Downstream 15bp 37514 chr12 7923049 7923049 1 + T G UCEC 7923049 + 7923029 7923069 41 TTGTAGATAAGTCAATGGTTTTGTAAAACGAGGAAGAAATA TTGTAGATAAGTCAATGGTTGTGTAAAACGAGGAAGAAATA Direct Gain 0 0.932313612935782 NA NA prediction 0.864627225871563 Functional Gain - NANOGNB ENSG00000205857 CDS Human protein_coding chr12:7923049 chr12:7923049 nonsynonymous SNV 0.406 4 21 hm7G_associated_SNPs_40770 0 0 0 0 2 NANOGNB chr12:7923114 5'GT 7923114 Upstream 66bp 37515 chr3 197559147 197559147 1 + A G STAD 197559147 + 197559127 197559167 41 ACTACGAAGAGAAAGCCAGTACCAAGAGAACCGCGGCAGTT ACTACGAAGAGAAAGCCAGTGCCAAGAGAACCGCGGCAGTT Direct Gain 0 0.932299226016639 NA NA prediction 0.864598452033278 Functional Gain - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197559147 chr3:197559147 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_40773 0 0 1 0 2 LRCH3 chr3:197559068 3'AG 197559068 Downstream 80bp 37516 chr3 197559147 197559147 1 + A G STAD 197559147 + 197559127 197559167 41 ACTACGAAGAGAAAGCCAGTACCAAGAGAACCGCGGCAGTT ACTACGAAGAGAAAGCCAGTGCCAAGAGAACCGCGGCAGTT Direct Gain 0 0.932299226016639 NA NA prediction 0.864598452033278 Functional Gain - LRCH3 ENSG00000186001 CDS Human protein_coding chr3:197559147 chr3:197559147 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_40773 0 0 1 0 2 LRCH3 chr3:197559188 5'GT 197559188 Upstream 42bp 37517 chr5 1816006 1816006 1 + C G LUSC 1816006 + 1815986 1816026 41 ACATGCGGTTACTGTGGGCTCCAGTTCAGACAGCACCACCA ACATGCGGTTACTGTGGGCTGCAGTTCAGACAGCACCACCA Direct Gain 0 0.932281194126884 NA NA prediction 0.864562388253767 Functional Gain - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1816006 chr5:1816006 synonymous SNV . 0 21 hm7G_associated_SNPs_40774 0 0 1 0 1 NDUFS6 chr5:1815965 3'AG 1815965 Downstream 42bp 37518 chr11 71548458 71548458 1 + C G KIRC 71548458 + 71548438 71548478 41 CATGTAGCCAGGGGCAAATTCAAGGAGATCTGTGAACGTCC CATGTAGCCAGGGGCAAATTGAAGGAGATCTGTGAACGTCC Direct Gain 0 0.932275879366982 NA NA prediction 0.864551758733964 Functional Gain - DEFB108B ENSG00000184276 CDS Human protein_coding chr11:71548458 chr11:71548458 nonsynonymous SNV 0.792 0 21 hm7G_associated_SNPs_40775 0 0 0 0 1 DEFB108B chr11:71548445 3'AG 71548445 Downstream 14bp 37519 chr1 151089920 151089920 1 + A G COAD 151089920 + 151089900 151089940 41 GAGACTGTAATTAAAGAGGAAGAAGAAGAGAAGTTGCCACT GAGACTGTAATTAAAGAGGAGGAAGAAGAGAAGTTGCCACT Direct Gain 0 0.932274552368617 NA NA prediction 0.864549104737234 Functional Gain - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151089920 chr1:151089920 synonymous SNV . 0 21 hm7G_associated_SNPs_40776 0 0 0 0 2 GABPB2 chr1:151089868 3'AG 151089868 Downstream 53bp 37520 chr1 151089920 151089920 1 + A G COAD 151089920 + 151089900 151089940 41 GAGACTGTAATTAAAGAGGAAGAAGAAGAGAAGTTGCCACT GAGACTGTAATTAAAGAGGAGGAAGAAGAGAAGTTGCCACT Direct Gain 0 0.932274552368617 NA NA prediction 0.864549104737234 Functional Gain - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151089920 chr1:151089920 synonymous SNV . 0 21 hm7G_associated_SNPs_40776 0 0 0 0 2 GABPB2 chr1:151089992 5'GT 151089992 Upstream 73bp 37521 chr4 190881927 190881927 1 + A G LIHC 190881927 + 190881907 190881947 41 GATCCTGTGCTGAAAGAGAAACCAAGAAAAAAGATGACATT GATCCTGTGCTGAAAGAGAAGCCAAGAAAAAAGATGACATT Direct Gain 0 0.932239201916946 NA NA prediction 0.864478403833892 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190881927 chr4:190881927 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40779 0 0 0 0 2 FRG1 chr4:190881903 3'AG 190881903 Downstream 25bp 37522 chr4 190881927 190881927 1 + A G LIHC 190881927 + 190881907 190881947 41 GATCCTGTGCTGAAAGAGAAACCAAGAAAAAAGATGACATT GATCCTGTGCTGAAAGAGAAGCCAAGAAAAAAGATGACATT Direct Gain 0 0.932239201916946 NA NA prediction 0.864478403833892 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190881927 chr4:190881927 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40779 0 0 0 0 2 FRG1 chr4:190881994 5'GT 190881994 Upstream 68bp 37523 chr19 30312955 30312955 1 + A G PAAD 30312955 + 30312935 30312975 41 TGTGTCCTGGCTGAATGTATACATGCAGGTTGCATATCTAA TGTGTCCTGGCTGAATGTATGCATGCAGGTTGCATATCTAA Direct Gain 0 0.932191441599217 NA NA prediction 0.864382883198434 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30312955 chr19:30312955 nonsynonymous SNV 0.882 4 21 hm7G_associated_SNPs_40783 0 0 1 0 2 CCNE1 chr19:30312903 3'AG 30312903 Downstream 53bp 37524 chr19 30312955 30312955 1 + A G PAAD 30312955 + 30312935 30312975 41 TGTGTCCTGGCTGAATGTATACATGCAGGTTGCATATCTAA TGTGTCCTGGCTGAATGTATGCATGCAGGTTGCATATCTAA Direct Gain 0 0.932191441599217 NA NA prediction 0.864382883198434 Functional Gain - CCNE1 ENSG00000105173 CDS Human protein_coding chr19:30312955 chr19:30312955 nonsynonymous SNV 0.882 4 21 hm7G_associated_SNPs_40783 0 0 1 0 2 CCNE1 chr19:30313037 5'GT 30313037 Upstream 83bp 37525 chr18 29797884 29797884 1 + C G ESCA 29797884 + 29797864 29797904 41 ATTGCACCAGGAAGAAATATCGTGAAAGGATGAGCTCAAAT ATTGCACCAGGAAGAAATATGGTGAAAGGATGAGCTCAAAT Direct Gain 0 0.932181538538217 NA NA prediction 0.864363077076434 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29797884 chr18:29797884 nonsynonymous SNV 0.421 0 21 hm7G_associated_SNPs_40784 0 0 1 0 1 MEP1B chr18:29797928 5'GT 29797928 Upstream 45bp 37526 chr11 125617646 125617646 1 + A G LUAD 125617646 + 125617626 125617666 41 CCTCCAGTTCCCAGGAGAAAAGTGCTCCAGAGGAAGAGGAA CCTCCAGTTCCCAGGAGAAAGGTGCTCCAGAGGAAGAGGAA Direct Gain 0 0.932174654952821 NA NA prediction 0.864349309905643 Functional Gain - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617646 chr11:125617646 nonsynonymous SNV 0.693 0 21 hm7G_associated_SNPs_40785 0 0 0 0 2 PATE1 chr11:125617595 3'AG 125617595 Downstream 52bp 37527 chr11 125617646 125617646 1 + A G LUAD 125617646 + 125617626 125617666 41 CCTCCAGTTCCCAGGAGAAAAGTGCTCCAGAGGAAGAGGAA CCTCCAGTTCCCAGGAGAAAGGTGCTCCAGAGGAAGAGGAA Direct Gain 0 0.932174654952821 NA NA prediction 0.864349309905643 Functional Gain - PATE1 ENSG00000171053 CDS Human protein_coding chr11:125617646 chr11:125617646 nonsynonymous SNV 0.693 0 21 hm7G_associated_SNPs_40785 0 0 0 0 2 PATE1 chr11:125617717 5'GT 125617717 Upstream 72bp 37528 chr20 35517722 35517722 1 + A G rs151095581 35517722 + 35517702 35517742 41 CTCCCCTTGCCCGACCTTCAACAACGAGGTGCTGGCCCGGC CTCCCCTTGCCCGACCTTCAGCAACGAGGTGCTGGCCCGGC Direct Gain 0 0.932159153207584 NA NA prediction 0.864318306415167 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35517722 chr20:35517722 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_40788 0 0 0 0 2 TLDC2 chr20:35517654 3'AG 35517654 Downstream 69bp 37529 chr20 35517722 35517722 1 + A G rs151095581 35517722 + 35517702 35517742 41 CTCCCCTTGCCCGACCTTCAACAACGAGGTGCTGGCCCGGC CTCCCCTTGCCCGACCTTCAGCAACGAGGTGCTGGCCCGGC Direct Gain 0 0.932159153207584 NA NA prediction 0.864318306415167 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35517722 chr20:35517722 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_40788 0 0 0 0 2 TLDC2 chr20:35517806 5'GT 35517806 Upstream 85bp 37530 chr1 10477152 10477152 1 + C G HNSC 10477152 + 10477132 10477172 41 GTTTGATGGTGATAAGAAATCATTCCTGGAGGACATTCGGA GTTTGATGGTGATAAGAAATGATTCCTGGAGGACATTCGGA Direct Gain 0 0.932118143138497 NA NA prediction 0.864236286276995 Functional Gain - PGD ENSG00000142657 CDS Human protein_coding chr1:10477152 chr1:10477152 stopgain 0.992 0 21 hm7G_associated_SNPs_40789 0 0 1 0 1 PGD chr1:10477174 5'GT 10477174 Upstream 23bp 37531 chr9 95782666 95782666 1 + T G SKCM 95782666 + 95782646 95782686 41 CAAGGCTTTTGGTGGCGCCTTCAGCCAGGATGAGGACCCCA CAAGGCTTTTGGTGGCGCCTGCAGCCAGGATGAGGACCCCA Direct Gain 0 0.932107029043799 NA NA prediction 0.864214058087598 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95782666 chr9:95782666 nonsynonymous SNV 0.047 0 21 hm7G_associated_SNPs_40791 0 0 0 0 2 FGD3 chr9:95782599 3'AG 95782599 Downstream 68bp 37532 chr9 95782666 95782666 1 + T G SKCM 95782666 + 95782646 95782686 41 CAAGGCTTTTGGTGGCGCCTTCAGCCAGGATGAGGACCCCA CAAGGCTTTTGGTGGCGCCTGCAGCCAGGATGAGGACCCCA Direct Gain 0 0.932107029043799 NA NA prediction 0.864214058087598 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95782666 chr9:95782666 nonsynonymous SNV 0.047 0 21 hm7G_associated_SNPs_40791 0 0 0 0 2 FGD3 chr9:95782706 5'GT 95782706 Upstream 41bp 37533 chrX 70514091 70514091 1 + A G rs61733878 70514091 + 70514071 70514111 41 TCCTAGGAAACCCGAACCCTAGCGGAGATTGCCAAAGTGGA TCCTAGGAAACCCGAACCCTGGCGGAGATTGCCAAAGTGGA Direct Gain 0 0.932105432789947 NA NA prediction 0.864210865579895 Functional Gain - NONO ENSG00000147140 CDS Human protein_coding chrX:70514091 chrX:70514091 synonymous SNV . 0 21 hm7G_associated_SNPs_40792 0 0 1 0 1 NONO chrX:70514077 3'AG 70514077 Downstream 15bp 37534 chr11 55655732 55655732 1 + A G UCEC 55655732 + 55655712 55655752 41 CATAAAGCAGATGTGGAGCTACTCCAGGTATGGACTGACCA CATAAAGCAGATGTGGAGCTGCTCCAGGTATGGACTGACCA Direct Gain 0 0.932103170478348 NA NA prediction 0.864206340956695 Functional Gain - TRIM51 ENSG00000124900 CDS Human protein_coding chr11:55655732 chr11:55655732 synonymous SNV . 0 21 hm7G_associated_SNPs_40793 0 0 0 0 1 TRIM51 chr11:55655738 5'GT 55655738 Upstream 7bp 37535 chr1 109472536 109472536 1 + T G UCEC 109472536 + 109472516 109472556 41 CTTTGTTGGAGTTTAAAAATTCAGGGAAAAAATCGGCAGAC CTTTGTTGGAGTTTAAAAATGCAGGGAAAAAATCGGCAGAC Direct Gain 0 0.932078471721164 NA NA prediction 0.864156943442329 Functional Gain - GPSM2 ENSG00000121957 CDS Human other chr1:109472536 chr1:109472536 nonsynonymous SNV 0.599 2 21 hm7G_associated_SNPs_40794 0 0 1 0 1 CLCC1;GPSM2 chr1:109472597 5'GT 109472597 Upstream 62bp 37536 chr4 48862751 48862751 1 + A G LIHC 48862751 + 48862731 48862771 41 TTTTTTCCTAGTCAAAGTAAACAAGTATGGAGATACTTGGG TTTTTTCCTAGTCAAAGTAAGCAAGTATGGAGATACTTGGG Direct Gain 0 0.932067384990977 NA NA prediction 0.864134769981954 Functional Gain - OCIAD1 ENSG00000109180 CDS Human protein_coding chr4:48862751 chr4:48862751 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40795 0 0 1 0 1 OCIAD1 chr4:48862742 3'AG 48862742 Downstream 10bp 37537 chr7 5944836 5944836 1 + A G rs369436541 5944836 + 5944816 5944856 41 AAATCCAGTCCTTTATTAATAGAATGGAGGAAAGCCTGAAT AAATCCAGTCCTTTATTAATGGAATGGAGGAAAGCCTGAAT Direct Gain 0 0.93203618420505 NA NA prediction 0.8640723684101 Functional Gain - CCZ1 ENSG00000122674 CDS Human protein_coding chr7:5944836 chr7:5944836 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_40797 0 0 0 0 1 CCZ1 chr7:5944900 5'GT 5944900 Upstream 65bp 37538 chr8 76465372 76465372 1 + A G CESC 76465372 + 76465352 76465392 41 TCTATGAAACAGCAGCTCTTAGTCTTGGTGGAATGGGCTAA TCTATGAAACAGCAGCTCTTGGTCTTGGTGGAATGGGCTAA Direct Gain 0 0.932026542635122 NA NA prediction 0.864053085270243 Functional Gain - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76465372 chr8:76465372 synonymous SNV . 0 21 hm7G_associated_SNPs_40800 0 0 0 0 2 HNF4G chr8:76465277 3'AG 76465277 Downstream 96bp 37539 chr8 76465372 76465372 1 + A G CESC 76465372 + 76465352 76465392 41 TCTATGAAACAGCAGCTCTTAGTCTTGGTGGAATGGGCTAA TCTATGAAACAGCAGCTCTTGGTCTTGGTGGAATGGGCTAA Direct Gain 0 0.932026542635122 NA NA prediction 0.864053085270243 Functional Gain - HNF4G ENSG00000164749 CDS Human protein_coding chr8:76465372 chr8:76465372 synonymous SNV . 0 21 hm7G_associated_SNPs_40800 0 0 0 0 2 HNF4G chr8:76465432 5'GT 76465432 Upstream 61bp 37540 chr12 122468650 122468650 1 + A G UCEC 122468650 + 122468630 122468670 41 TGACACATCCCTACGAATCTACAAATGGGTCCCTGTGACGG TGACACATCCCTACGAATCTGCAAATGGGTCCCTGTGACGG Direct Gain 0 0.93201212252752 NA NA prediction 0.864024245055041 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122468650 chr12:122468650 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40802 0 0 1 0 2 BCL7A chr12:122468606 3'AG 122468606 Downstream 45bp 37541 chr12 122468650 122468650 1 + A G UCEC 122468650 + 122468630 122468670 41 TGACACATCCCTACGAATCTACAAATGGGTCCCTGTGACGG TGACACATCCCTACGAATCTGCAAATGGGTCCCTGTGACGG Direct Gain 0 0.93201212252752 NA NA prediction 0.864024245055041 Functional Gain - BCL7A ENSG00000110987 CDS Human protein_coding chr12:122468650 chr12:122468650 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40802 0 0 1 0 2 BCL7A chr12:122468687 5'GT 122468687 Upstream 38bp 37542 chrX 52844181 52844181 1 + A G CESC 52844181 + 52844161 52844201 41 CTGGGGATGAATGCGGAGATAGTCCTGATGTCCAGGGGAAG CTGGGGATGAATGCGGAGATGGTCCTGATGTCCAGGGGAAG Direct Gain 0 0.93189944352489 NA NA prediction 0.863798887049781 Functional Gain - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844181 chrX:52844181 nonsynonymous SNV 0.020 0 21 hm7G_associated_SNPs_40806 0 0 0 0 2 XAGE5 chrX:52844116 3'AG 52844116 Downstream 66bp 37543 chrX 52844181 52844181 1 + A G CESC 52844181 + 52844161 52844201 41 CTGGGGATGAATGCGGAGATAGTCCTGATGTCCAGGGGAAG CTGGGGATGAATGCGGAGATGGTCCTGATGTCCAGGGGAAG Direct Gain 0 0.93189944352489 NA NA prediction 0.863798887049781 Functional Gain - XAGE5 ENSG00000171405 CDS Human protein_coding chrX:52844181 chrX:52844181 nonsynonymous SNV 0.020 0 21 hm7G_associated_SNPs_40806 0 0 0 0 2 XAGE5 chrX:52844241 5'GT 52844241 Upstream 61bp 37544 chr8 104394720 104394720 1 + A G SKCM 104394720 + 104394700 104394740 41 GAAGGAATTGGTGCTGGATTAGTGGATGTTGCTATCTGGGT GAAGGAATTGGTGCTGGATTGGTGGATGTTGCTATCTGGGT Direct Gain 0 0.931896293884871 NA NA prediction 0.863792587769742 Functional Gain - CTHRC1 ENSG00000164932 CDS Human protein_coding chr8:104394720 chr8:104394720 synonymous SNV . 0 21 hm7G_associated_SNPs_40807 0 0 0 0 1 CTHRC1 chr8:104394686 3'AG 104394686 Downstream 35bp 37545 chr1 192780546 192780546 1 + T G UCEC 192780546 + 192780526 192780566 41 TTTCAGATAAACATAGATTTTCAAACCAAAACTCTGATTGC TTTCAGATAAACATAGATTTGCAAACCAAAACTCTGATTGC Direct Gain 0 0.931827153078686 NA NA prediction 0.863654306157372 Functional Gain - RGS2 ENSG00000116741 CDS Human protein_coding chr1:192780546 chr1:192780546 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40809 0 0 0 0 1 RGS2 chr1:192780532 3'AG 192780532 Downstream 15bp 37546 chr11 65340970 65340970 1 + C G LUSC 65340970 + 65340950 65340990 41 CTCCCTCCATTCGGACAGCTCCTACCCACCGGATGCGGGCC CTCCCTCCATTCGGACAGCTGCTACCCACCGGATGCGGGCC Direct Gain 0 0.931823046807056 NA NA prediction 0.863646093614113 Functional Gain - FAM89B ENSG00000173465;ENSG00000176973 CDS Human other chr11:65340970 chr11:65340970 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40810 0 0 1 0 1 FAM89B chr11:65340873 3'AG 65340873 Downstream 98bp 37547 chr11 107535785 107535785 1 + C G CESC 107535785 + 107535765 107535805 41 GAATTTCATAAGTTTTGGATCGAAGAGGACCCCATGGACAT GAATTTCATAAGTTTTGGATGGAAGAGGACCCCATGGACAT Direct Gain 0 0.931817487909675 NA NA prediction 0.863634975819349 Functional Gain - ELMOD1 ENSG00000110675 CDS Human protein_coding chr11:107535785 chr11:107535785 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_40811 0 0 0 0 1 ELMOD1 chr11:107535751 3'AG 107535751 Downstream 35bp 37548 chr5 133707323 133707323 1 + T G UCEC 133707323 + 133707303 133707343 41 GGAGGAGGCTCATGCGGGATTTCAAGCGGTAAGGGCCTTCA GGAGGAGGCTCATGCGGGATGTCAAGCGGTAAGGGCCTTCA Direct Gain 0 0.931806667901266 NA NA prediction 0.863613335802532 Functional Gain - UBE2B ENSG00000119048 CDS Human protein_coding chr5:133707323 chr5:133707323 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40812 0 0 1 0 1 UBE2B chr5:133707330 5'GT 133707330 Upstream 8bp 37549 chr5 167945041 167945041 1 + A G UCEC 167945041 + 167945021 167945061 41 AGAGTTCTATGATAGCTGCTACTGTGTGGAGAAAGATAGAC AGAGTTCTATGATAGCTGCTGCTGTGTGGAGAAAGATAGAC Direct Gain 0 0.931804218373778 NA NA prediction 0.863608436747556 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167945041 chr5:167945041 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_40813 0 0 1 0 1 RARS chr5:167945067 5'GT 167945067 Upstream 27bp 37550 chr19 59059687 59059687 1 + C G BRCA 59059687 + 59059667 59059707 41 TTCCAGCTGCACCGGGCCCTCAAGATGATTGTGGATCCCGT TTCCAGCTGCACCGGGCCCTGAAGATGATTGTGGATCCCGT Direct Gain 0 0.931802401936675 NA NA prediction 0.863604803873349 Functional Gain - TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59059687 chr19:59059687 synonymous SNV . 0 21 hm7G_associated_SNPs_40814 0 0 1 0 1 TRIM28 chr19:59059775 5'GT 59059775 Upstream 89bp 37551 chr3 129009528 129009528 1 + C G rs186016030 129009528 + 129009508 129009548 41 ACATTTTCCCTCAGGTGCCTCTGGGAAAGGGAAGACGCTGT ACATTTTCCCTCAGGTGCCTGTGGGAAAGGGAAGACGCTGT Direct Gain 0 0.931798407364255 NA NA prediction 0.86359681472851 Functional Gain - HMCES ENSG00000183624 CDS Human protein_coding chr3:129009528 chr3:129009528 nonsynonymous SNV 0.982 3 21 hm7G_associated_SNPs_40815 0 0 0 0 1 HMCES chr3:129009522 3'AG 129009522 Downstream 7bp 37552 chr22 24040507 24040507 1 + A G rs146449530 24040507 + 24040487 24040527 41 TCACAAGAATGGAGCAGCTCAGTGACAAAGAGAGGTGAGGG TCACAAGAATGGAGCAGCTCGGTGACAAAGAGAGGTGAGGG Direct Gain 0 0.931784060759128 NA NA prediction 0.863568121518257 Functional Gain - RGL4 ENSG00000159496 CDS Human protein_coding chr22:24040507 chr22:24040507 nonsynonymous SNV 0.013 2 21 hm7G_associated_SNPs_40817 0 0 0 0 1 RGL4 chr22:24040520 5'GT 24040520 Upstream 14bp 37553 chr1 155110714 155110714 1 + A G UCEC 155110714 + 155110694 155110734 41 CTTCTGGCTTTTCTGGAAGTACCCCCAGGAGCAAGACAGGA CTTCTGGCTTTTCTGGAAGTGCCCCCAGGAGCAAGACAGGA Direct Gain 0 0.931772998301976 NA NA prediction 0.863545996603951 Functional Gain - SLC50A1 ENSG00000169241 CDS Human protein_coding chr1:155110714 chr1:155110714 nonsynonymous SNV 0.879 4 21 hm7G_associated_SNPs_40818 0 0 1 1 1 SLC50A1 chr1:155110656 3'AG 155110656 Downstream 59bp 37554 chr17 32614645 32614645 1 + A G rs202030520 32614645 + 32614625 32614665 41 GGATATCTGTGCCGACCCCAAGAAGAAGTGGGTGCAGGATT GGATATCTGTGCCGACCCCAGGAAGAAGTGGGTGCAGGATT Direct Gain 0 0.931767863223468 NA NA prediction 0.863535726446937 Functional Gain - CCL11 ENSG00000172156 CDS Human protein_coding chr17:32614645 chr17:32614645 nonsynonymous SNV 0.040 0 21 hm7G_associated_SNPs_40819 0 0 0 0 1 CCL11 chr17:32614604 3'AG 32614604 Downstream 42bp 37555 chr7 87022372 87022372 1 + C G CESC 87022372 + 87022352 87022392 41 TATGGATTTTTCTACCATATCAGAGATGACAGGTGAGGCTT TATGGATTTTTCTACCATATGAGAGATGACAGGTGAGGCTT Direct Gain 0 0.93176329571746 NA NA prediction 0.863526591434919 Functional Gain - CROT ENSG00000005469 CDS Human protein_coding chr7:87022372 chr7:87022372 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40820 0 0 0 0 1 CROT chr7:87022383 5'GT 87022383 Upstream 12bp 37556 chr6 129802447 129802447 1 - G C COAD 129802447 - 129802427 129802467 41 AATTGGCACAGGGGAGAGCTCCACAAAACCAGGCTTAGGAA AATTGGCACAGGGGAGAGCTGCACAAAACCAGGCTTAGGAA Direct Gain 0 0.931740997091078 NA NA prediction 0.863481994182156 Functional Gain - LAMA2 ENSG00000196569 CDS Human other chr6:129802447 chr6:129802447 nonsynonymous SNV 0.976 3 21 hm7G_associated_SNPs_40822 0 0 0 0 1 LAMA2 chr6:129802406 5'GT 129802406 Upstream 42bp 37557 chr7 16817486 16817486 1 + C G OV 16817486 + 16817466 16817506 41 GAAATGACATCCAGAGAAATCTAAACTGCTGTGGGTTCCGA GAAATGACATCCAGAGAAATGTAAACTGCTGTGGGTTCCGA Direct Gain 0 0.931736604461344 NA NA prediction 0.863473208922688 Functional Gain - TSPAN13 ENSG00000106537 CDS Human protein_coding chr7:16817486 chr7:16817486 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40823 0 0 1 0 1 TSPAN13 chr7:16817536 5'GT 16817536 Upstream 51bp 37558 chr5 172585837 172585837 1 + C G BLCA 172585837 + 172585817 172585857 41 CTTCTTCAGGGAGGAGATCTCTTAAGGCAAAGGTACCTATT CTTCTTCAGGGAGGAGATCTGTTAAGGCAAAGGTACCTATT Direct Gain 0 0.931726744753931 NA NA prediction 0.863453489507863 Functional Gain - BNIP1 ENSG00000113734 CDS Human protein_coding chr5:172585837 chr5:172585837 synonymous SNV . 0 21 hm7G_associated_SNPs_40824 0 0 1 0 2 BNIP1 chr5:172585747 3'AG 172585747 Downstream 91bp 37559 chr5 172585837 172585837 1 + C G BLCA 172585837 + 172585817 172585857 41 CTTCTTCAGGGAGGAGATCTCTTAAGGCAAAGGTACCTATT CTTCTTCAGGGAGGAGATCTGTTAAGGCAAAGGTACCTATT Direct Gain 0 0.931726744753931 NA NA prediction 0.863453489507863 Functional Gain - BNIP1 ENSG00000113734 CDS Human protein_coding chr5:172585837 chr5:172585837 synonymous SNV . 0 21 hm7G_associated_SNPs_40824 0 0 1 0 2 BNIP1 chr5:172585848 5'GT 172585848 Upstream 12bp 37560 chr11 111946328 111946328 1 + C G BLCA 111946328 + 111946308 111946348 41 ATTCCACTGGGGAAGGTCCTCCTGAGGAATGTCATCCGGCA ATTCCACTGGGGAAGGTCCTGCTGAGGAATGTCATCCGGCA Direct Gain 0 0.931706746858922 NA NA prediction 0.863413493717843 Functional Gain - C11orf57 ENSG00000150776 CDS Human protein_coding chr11:111946328 chr11:111946328 synonymous SNV . 0 21 hm7G_associated_SNPs_40826 0 0 1 0 2 C11orf57 chr11:111946291 3'AG 111946291 Downstream 38bp 37561 chr11 111946328 111946328 1 + C G BLCA 111946328 + 111946308 111946348 41 ATTCCACTGGGGAAGGTCCTCCTGAGGAATGTCATCCGGCA ATTCCACTGGGGAAGGTCCTGCTGAGGAATGTCATCCGGCA Direct Gain 0 0.931706746858922 NA NA prediction 0.863413493717843 Functional Gain - C11orf57 ENSG00000150776 CDS Human protein_coding chr11:111946328 chr11:111946328 synonymous SNV . 0 21 hm7G_associated_SNPs_40826 0 0 1 0 2 C11orf57 chr11:111946367 5'GT 111946367 Upstream 40bp 37562 chr13 25284934 25284934 1 + A G UCEC 25284934 + 25284914 25284954 41 TTTGTGTGTCTTGCAGAAATAAAGTCATCTGGGTGGGGATC TTTGTGTGTCTTGCAGAAATGAAGTCATCTGGGTGGGGATC Direct Gain 0 0.931692231503474 NA NA prediction 0.863384463006947 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25284934 chr13:25284934 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40829 0 0 0 0 2 ATP12A chr13:25284930 3'AG 25284930 Downstream 5bp 37563 chr13 25284934 25284934 1 + A G UCEC 25284934 + 25284914 25284954 41 TTTGTGTGTCTTGCAGAAATAAAGTCATCTGGGTGGGGATC TTTGTGTGTCTTGCAGAAATGAAGTCATCTGGGTGGGGATC Direct Gain 0 0.931692231503474 NA NA prediction 0.863384463006947 Functional Gain - ATP12A ENSG00000075673 CDS Human protein_coding chr13:25284934 chr13:25284934 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40829 0 0 0 0 2 ATP12A chr13:25285031 5'GT 25285031 Upstream 98bp 37564 chr1 2087448 2087448 1 + A G GBM 2087448 + 2087428 2087468 41 TTTCAGGATATTGACTGGGTACAGACAGAGAAGCACGTGTT TTTCAGGATATTGACTGGGTGCAGACAGAGAAGCACGTGTT Direct Gain 0 0.931676353458107 NA NA prediction 0.863352706916215 Functional Gain - PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2087448 chr1:2087448 synonymous SNV . 0 21 hm7G_associated_SNPs_40831 0 0 0 0 2 PRKCZ chr1:2087434 3'AG 2087434 Downstream 15bp 37565 chr1 2087448 2087448 1 + A G GBM 2087448 + 2087428 2087468 41 TTTCAGGATATTGACTGGGTACAGACAGAGAAGCACGTGTT TTTCAGGATATTGACTGGGTGCAGACAGAGAAGCACGTGTT Direct Gain 0 0.931676353458107 NA NA prediction 0.863352706916215 Functional Gain - PRKCZ ENSG00000067606 CDS Human protein_coding chr1:2087448 chr1:2087448 synonymous SNV . 0 21 hm7G_associated_SNPs_40831 0 0 0 0 2 PRKCZ chr1:2087531 5'GT 2087531 Upstream 84bp 37566 chr12 16053885 16053885 1 + A G LIHC 16053885 + 16053865 16053905 41 GCTTTTCTTTTTACAGAAGAAGATAGTGGTGAGCTGGCAAA GCTTTTCTTTTTACAGAAGAGGATAGTGGTGAGCTGGCAAA Direct Gain 0 0.931649931574895 NA NA prediction 0.863299863149789 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16053885 chr12:16053885 synonymous SNV . 0 21 hm7G_associated_SNPs_40833 0 0 1 0 2 STRAP chr12:16053881 3'AG 16053881 Downstream 5bp 37567 chr12 16053885 16053885 1 + A G LIHC 16053885 + 16053865 16053905 41 GCTTTTCTTTTTACAGAAGAAGATAGTGGTGAGCTGGCAAA GCTTTTCTTTTTACAGAAGAGGATAGTGGTGAGCTGGCAAA Direct Gain 0 0.931649931574895 NA NA prediction 0.863299863149789 Functional Gain - STRAP ENSG00000023734 CDS Human protein_coding chr12:16053885 chr12:16053885 synonymous SNV . 0 21 hm7G_associated_SNPs_40833 0 0 1 0 2 STRAP chr12:16053946 5'GT 16053946 Upstream 62bp 37568 chr14 36333100 36333100 1 + C G CESC 36333100 + 36333080 36333120 41 GTGGAATGATGAGCTTCAGTCAAGAAAAAAGAGGAAGGATC GTGGAATGATGAGCTTCAGTGAAGAAAAAAGAGGAAGGATC Direct Gain 0 0.931633031313283 NA NA prediction 0.863266062626565 Functional Gain - BRMS1L ENSG00000100916 CDS Human protein_coding chr14:36333100 chr14:36333100 stopgain 1.000 1 21 hm7G_associated_SNPs_40835 0 0 1 0 1 BRMS1L chr14:36333076 3'AG 36333076 Downstream 25bp 37569 chr11 66366699 66366699 1 + C G CESC 66366699 + 66366679 66366719 41 ACGGGGCGGCAGGCGGTACTCAAGGGCATGGGCAGCGGCCA ACGGGGCGGCAGGCGGTACTGAAGGGCATGGGCAGCGGCCA Direct Gain 0 0.931632253281122 NA NA prediction 0.863264506562244 Functional Gain - CCS ENSG00000173992 CDS Human protein_coding chr11:66366699 chr11:66366699 synonymous SNV . 0 21 hm7G_associated_SNPs_40836 0 0 1 0 1 CCS chr11:66366724 5'GT 66366724 Upstream 26bp 37570 chr17 34945731 34945731 1 + A G LUSC 34945731 + 34945711 34945751 41 ACCAGTCTTTCTACAGCAATAGAGAACAATACCGACAGCAT ACCAGTCTTTCTACAGCAATGGAGAACAATACCGACAGCAT Direct Gain 0 0.931577522804667 NA NA prediction 0.863155045609334 Functional Gain - GGNBP2 ENSG00000005955 CDS Human other chr17:34945731 chr17:34945731 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40841 0 0 1 0 1 GGNBP2 chr17:34945638 3'AG 34945638 Downstream 94bp 37571 chr12 69993763 69993763 1 + A G OV 69993763 + 69993743 69993783 41 GGTGATTCTGCGTGTGGACAACATCATCAAAGCGGCACCCA GGTGATTCTGCGTGTGGACAGCATCATCAAAGCGGCACCCA Direct Gain 0 0.931532623512055 NA NA prediction 0.86306524702411 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69993763 chr12:69993763 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_40844 0 0 1 0 1 CCT2 chr12:69993784 5'GT 69993784 Upstream 22bp 37572 chr10 105139408 105139408 1 + T G HNSC 105139408 + 105139388 105139428 41 ACCAGAAATTGAGGTACCTTTGGATGACGAGGATGAAGAGG ACCAGAAATTGAGGTACCTTGGGATGACGAGGATGAAGAGG Direct Gain 0 0.93152908256536 NA NA prediction 0.86305816513072 Functional Gain - TAF5 ENSG00000148835 CDS Human protein_coding chr10:105139408 chr10:105139408 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_40845 0 0 1 0 1 TAF5 chr10:105139365 3'AG 105139365 Downstream 44bp 37573 chr1 186375381 186375381 1 + T G rs146527212 186375381 + 186375361 186375401 41 CAAATAGAAGATTTGGAAATTGCAGAGGAAACAAACACAGG CAAATAGAAGATTTGGAAATGGCAGAGGAAACAAACACAGG Direct Gain 0 0.931527496629298 NA NA prediction 0.863054993258597 Functional Gain - C1orf27 ENSG00000157181 CDS Human protein_coding chr1:186375381 chr1:186375381 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_40846 0 0 1 0 1 C1orf27 chr1:186375400 5'GT 186375400 Upstream 20bp 37574 chr9 96857687 96857687 1 + A G rs143078046 96857687 + 96857667 96857707 41 AAGGTGATGACATTTGCCTTACAGGAAGGAAAAGTAGCTAT AAGGTGATGACATTTGCCTTGCAGGAAGGAAAAGTAGCTAT Direct Gain 0 0.93152087921644 NA NA prediction 0.86304175843288 Functional Gain - PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96857687 chr9:96857687 synonymous SNV . 0 21 hm7G_associated_SNPs_40847 0 0 0 0 2 PTPDC1 chr9:96857599 3'AG 96857599 Downstream 89bp 37575 chr9 96857687 96857687 1 + A G rs143078046 96857687 + 96857667 96857707 41 AAGGTGATGACATTTGCCTTACAGGAAGGAAAAGTAGCTAT AAGGTGATGACATTTGCCTTGCAGGAAGGAAAAGTAGCTAT Direct Gain 0 0.93152087921644 NA NA prediction 0.86304175843288 Functional Gain - PTPDC1 ENSG00000158079 CDS Human protein_coding chr9:96857687 chr9:96857687 synonymous SNV . 0 21 hm7G_associated_SNPs_40847 0 0 0 0 2 PTPDC1 chr9:96857736 5'GT 96857736 Upstream 50bp 37576 chr7 31736617 31736617 1 + C G UCEC 31736617 + 31736597 31736637 41 TAATTAAAAGATACGATGTTCAAGAGAGACATCCAAAGGGC TAATTAAAAGATACGATGTTGAAGAGAGACATCCAAAGGGC Direct Gain 0 0.931483157643761 NA NA prediction 0.862966315287523 Functional Gain - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31736617 chr7:31736617 nonsynonymous SNV 0.990 0 21 hm7G_associated_SNPs_40849 0 0 0 0 1 PPP1R17 chr7:31736579 3'AG 31736579 Downstream 39bp 37577 chr11 67197060 67197060 1 + A G LUSC 67197060 + 67197040 67197080 41 ATATATGCCATGAAAGTCCTAAGGAAGGTGAGTCACTCGTT ATATATGCCATGAAAGTCCTGAGGAAGGTGAGTCACTCGTT Direct Gain 0 0.931482542617513 NA NA prediction 0.862965085235025 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67197060 chr11:67197060 synonymous SNV . 0 21 hm7G_associated_SNPs_40850 0 0 0 0 2 RPS6KB2 chr11:67196998 3'AG 67196998 Downstream 63bp 37578 chr11 67197060 67197060 1 + A G LUSC 67197060 + 67197040 67197080 41 ATATATGCCATGAAAGTCCTAAGGAAGGTGAGTCACTCGTT ATATATGCCATGAAAGTCCTGAGGAAGGTGAGTCACTCGTT Direct Gain 0 0.931482542617513 NA NA prediction 0.862965085235025 Functional Gain - RPS6KB2 ENSG00000175634 CDS Human protein_coding chr11:67197060 chr11:67197060 synonymous SNV . 0 21 hm7G_associated_SNPs_40850 0 0 0 0 2 RPS6KB2 chr11:67197066 5'GT 67197066 Upstream 7bp 37579 chr11 85576200 85576200 1 + A G UCEC 85576200 + 85576180 85576220 41 GGAAAGCAAATAAAAAGGATACACATGACGGGCCACCAAAA GGAAAGCAAATAAAAAGGATGCACATGACGGGCCACCAAAA Direct Gain 0 0.931472638229614 NA NA prediction 0.862945276459227 Functional Gain - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85576200 chr11:85576200 nonsynonymous SNV 0.116 0 21 hm7G_associated_SNPs_40851 0 0 0 0 2 CCDC83 chr11:85576139 3'AG 85576139 Downstream 62bp 37580 chr11 85576200 85576200 1 + A G UCEC 85576200 + 85576180 85576220 41 GGAAAGCAAATAAAAAGGATACACATGACGGGCCACCAAAA GGAAAGCAAATAAAAAGGATGCACATGACGGGCCACCAAAA Direct Gain 0 0.931472638229614 NA NA prediction 0.862945276459227 Functional Gain - CCDC83 ENSG00000150676 CDS Human protein_coding chr11:85576200 chr11:85576200 nonsynonymous SNV 0.116 0 21 hm7G_associated_SNPs_40851 0 0 0 0 2 CCDC83 chr11:85576261 5'GT 85576261 Upstream 62bp 37581 chr3 131080909 131080909 1 + A G UCEC 131080909 + 131080889 131080929 41 CTCCCTCTGCGCTACGCCATACTGGTGAGGAGGGCGCGCGC CTCCCTCTGCGCTACGCCATGCTGGTGAGGAGGGCGCGCGC Direct Gain 0 0.931466831978795 NA NA prediction 0.862933663957589 Functional Gain - NUDT16P1 ENSG00000246082 ncRNA_exonic Human transcribed_unitary_pseudogene chr3:131080909 chr3:131080909 . . 0 21 hm7G_associated_SNPs_40852 0 0 1 0 1 NUDT16P1 chr3:131080912 5'GT 131080912 Upstream 4bp 37582 chr18 71825417 71825417 1 + A G LGG 71825417 + 71825397 71825437 41 TCTCGACAGGTTCACTGAATATGTAAAAGATGGGCTGAAAC TCTCGACAGGTTCACTGAATGTGTAAAAGATGGGCTGAAAC Direct Gain 0 0.931449669653411 NA NA prediction 0.862899339306822 Functional Gain - TIMM21 ENSG00000075336 CDS Human protein_coding chr18:71825417 chr18:71825417 nonsynonymous SNV 0.666 4 21 hm7G_associated_SNPs_40854 0 0 1 0 2 TIMM21 chr18:71825406 3'AG 71825406 Downstream 12bp 37583 chr18 71825417 71825417 1 + A G LGG 71825417 + 71825397 71825437 41 TCTCGACAGGTTCACTGAATATGTAAAAGATGGGCTGAAAC TCTCGACAGGTTCACTGAATGTGTAAAAGATGGGCTGAAAC Direct Gain 0 0.931449669653411 NA NA prediction 0.862899339306822 Functional Gain - TIMM21 ENSG00000075336 CDS Human protein_coding chr18:71825417 chr18:71825417 nonsynonymous SNV 0.666 4 21 hm7G_associated_SNPs_40854 0 0 1 0 2 TIMM21 chr18:71825511 5'GT 71825511 Upstream 95bp 37584 chr6 44217799 44217799 1 + A G SKCM 44217799 + 44217779 44217819 41 CCAAAGTGATCCTCCATCTTAAAGAAGATCAGACAGAGTAC CCAAAGTGATCCTCCATCTTGAAGAAGATCAGACAGAGTAC Direct Gain 0 0.931434619636657 NA NA prediction 0.862869239273314 Functional Gain - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44217799 chr6:44217799 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40855 0 0 1 0 3 HSP90AB1 chr6:44217758 3'AG 44217758 Downstream 42bp 37585 chr6 44217799 44217799 1 + A G SKCM 44217799 + 44217779 44217819 41 CCAAAGTGATCCTCCATCTTAAAGAAGATCAGACAGAGTAC CCAAAGTGATCCTCCATCTTGAAGAAGATCAGACAGAGTAC Direct Gain 0 0.931434619636657 NA NA prediction 0.862869239273314 Functional Gain - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44217799 chr6:44217799 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40855 0 0 1 0 3 HSP90AB1 chr6:44217785 3'AG 44217785 Downstream 15bp 37586 chr6 44217799 44217799 1 + A G SKCM 44217799 + 44217779 44217819 41 CCAAAGTGATCCTCCATCTTAAAGAAGATCAGACAGAGTAC CCAAAGTGATCCTCCATCTTGAAGAAGATCAGACAGAGTAC Direct Gain 0 0.931434619636657 NA NA prediction 0.862869239273314 Functional Gain - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44217799 chr6:44217799 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40855 0 0 1 0 3 HSP90AB1 chr6:44217891 5'GT 44217891 Upstream 93bp 37587 chr11 118468489 118468489 1 + A G COAD 118468489 + 118468469 118468509 41 GACATGACAGTCGACGAAATACCCTGGAGTGGTGCCTGCCT GACATGACAGTCGACGAAATGCCCTGGAGTGGTGCCTGCCT Direct Gain 0 0.931419763622753 NA NA prediction 0.862839527245505 Functional Gain - ARCN1 ENSG00000095139 CDS Human protein_coding chr11:118468489 chr11:118468489 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40857 0 0 1 0 1 ARCN1 chr11:118468422 3'AG 118468422 Downstream 68bp 37588 chr1 63877667 63877667 1 + A G rs61755863 63877667 + 63877647 63877687 41 TCTGCTGGCTGCCATTCTTTACAGAAAGGGAACAAACCCTG TCTGCTGGCTGCCATTCTTTGCAGAAAGGGAACAAACCCTG Direct Gain 0 0.931412580611278 NA NA prediction 0.862825161222555 Functional Gain - ALG6 ENSG00000088035 CDS Human protein_coding chr1:63877667 chr1:63877667 nonsynonymous SNV 0.988 2 21 hm7G_associated_SNPs_40858 2 0 0 3 1 ALG6 chr1:63877597 3'AG 63877597 Downstream 71bp 37589 chr12 56527954 56527954 1 + C G LUSC 56527954 + 56527934 56527974 41 TGTCAATTCAGGATGTGACTCAGGAGAGCAAGGTGAGGGCC TGTCAATTCAGGATGTGACTGAGGAGAGCAAGGTGAGGGCC Direct Gain 0 0.931409862668564 NA NA prediction 0.862819725337128 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527954 chr12:56527954 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_40859 0 0 1 0 3 ESYT1 chr12:56527864 3'AG 56527864 Downstream 91bp 37590 chr12 56527954 56527954 1 + C G LUSC 56527954 + 56527934 56527974 41 TGTCAATTCAGGATGTGACTCAGGAGAGCAAGGTGAGGGCC TGTCAATTCAGGATGTGACTGAGGAGAGCAAGGTGAGGGCC Direct Gain 0 0.931409862668564 NA NA prediction 0.862819725337128 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527954 chr12:56527954 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_40859 0 0 1 0 3 ESYT1 chr12:56527894 3'AG 56527894 Downstream 61bp 37591 chr12 56527954 56527954 1 + C G LUSC 56527954 + 56527934 56527974 41 TGTCAATTCAGGATGTGACTCAGGAGAGCAAGGTGAGGGCC TGTCAATTCAGGATGTGACTGAGGAGAGCAAGGTGAGGGCC Direct Gain 0 0.931409862668564 NA NA prediction 0.862819725337128 Functional Gain - ESYT1 ENSG00000139641 CDS Human protein_coding chr12:56527954 chr12:56527954 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_40859 0 0 1 0 3 ESYT1 chr12:56527965 5'GT 56527965 Upstream 12bp 37592 chr3 133169167 133169167 1 + A G UCEC 133169167 + 133169147 133169187 41 GATGTGAAGCTGCTGCACAAACAGTTGGCAGGGTGTGAGCT GATGTGAAGCTGCTGCACAAGCAGTTGGCAGGGTGTGAGCT Direct Gain 0 0.931405647803648 NA NA prediction 0.862811295607296 Functional Gain - BFSP2 ENSG00000170819 CDS Human protein_coding chr3:133169167 chr3:133169167 synonymous SNV . 0 21 hm7G_associated_SNPs_40860 0 0 0 0 1 BFSP2 chr3:133169147 3'AG 133169147 Downstream 21bp 37593 chr15 45248923 45248923 1 + C G CESC 45248923 + 45248903 45248943 41 GGCTTGGCGACGCCATGTTTCAAGGGCAGCGCGGTTGGTTT GGCTTGGCGACGCCATGTTTGAAGGGCAGCGCGGTTGGTTT Direct Gain 0 0.931389329384708 NA NA prediction 0.862778658769415 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45248923 chr15:45248923 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_40862 0 0 0 0 1 TERB2 chr15:45248980 5'GT 45248980 Upstream 58bp 37594 chrX 54569708 54569708 1 + C G rs143190459 54569708 + 54569688 54569728 41 CCATTAGGCTGCCGCTGCTTCCAAATGGAGGAGGCTGTCCT CCATTAGGCTGCCGCTGCTTGCAAATGGAGGAGGCTGTCCT Direct Gain 0 0.931380563548889 NA NA prediction 0.862761127097778 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54569708 chrX:54569708 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40863 0 0 1 0 2 GNL3L chrX:54569640 3'AG 54569640 Downstream 69bp 37595 chrX 54569708 54569708 1 + C G rs143190459 54569708 + 54569688 54569728 41 CCATTAGGCTGCCGCTGCTTCCAAATGGAGGAGGCTGTCCT CCATTAGGCTGCCGCTGCTTGCAAATGGAGGAGGCTGTCCT Direct Gain 0 0.931380563548889 NA NA prediction 0.862761127097778 Functional Gain - GNL3L ENSG00000130119 CDS Human protein_coding chrX:54569708 chrX:54569708 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40863 0 0 1 0 2 GNL3L chrX:54569775 5'GT 54569775 Upstream 68bp 37596 chr11 105948563 105948563 1 + C G rs11553947 105948563 + 105948543 105948583 41 GCAGTGCGATCGATTCAGCCCGAGGAGAAGGAGCGCATTGG GCAGTGCGATCGATTCAGCCGGAGGAGAAGGAGCGCATTGG Direct Gain 0 0.931380539578263 NA NA prediction 0.862761079156526 Functional Gain - AASDHPPT ENSG00000149313 CDS Human protein_coding chr11:105948563 chr11:105948563 synonymous SNV . 0 21 hm7G_associated_SNPs_40864 0 0 1 0 1 AASDHPPT chr11:105948620 5'GT 105948620 Upstream 58bp 37597 chr9 95870078 95870078 1 + A G COAD 95870078 + 95870058 95870098 41 GTTACTACCCACAGATCCTTACCAACAAGGAGGCGGAAAAG GTTACTACCCACAGATCCTTGCCAACAAGGAGGCGGAAAAG Direct Gain 0 0.931347723299442 NA NA prediction 0.862695446598883 Functional Gain - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95870078 chr9:95870078 nonsynonymous SNV 0.984 1 21 hm7G_associated_SNPs_40865 0 0 1 0 2 CARD19 chr9:95870098 5'GT 95870098 Upstream 21bp 37598 chr9 95870078 95870078 1 + A G COAD 95870078 + 95870058 95870098 41 GTTACTACCCACAGATCCTTACCAACAAGGAGGCGGAAAAG GTTACTACCCACAGATCCTTGCCAACAAGGAGGCGGAAAAG Direct Gain 0 0.931347723299442 NA NA prediction 0.862695446598883 Functional Gain - CARD19 ENSG00000165233 CDS Human protein_coding chr9:95870078 chr9:95870078 nonsynonymous SNV 0.984 1 21 hm7G_associated_SNPs_40865 0 0 1 0 2 CARD19 chr9:95870109 5'GT 95870109 Upstream 32bp 37599 chr6 149901764 149901764 1 + C G BLCA 149901764 + 149901744 149901784 41 TGCAAACCACTAGCCAGTATCTTATCAGGAATGTGGAAACC TGCAAACCACTAGCCAGTATGTTATCAGGAATGTGGAAACC Direct Gain 0 0.931345322416511 NA NA prediction 0.862690644833022 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149901764 chr6:149901764 nonsynonymous SNV 0.909 1 21 hm7G_associated_SNPs_40867 0 0 1 0 2 GINM1 chr6:149901729 3'AG 149901729 Downstream 36bp 37600 chr6 149901764 149901764 1 + C G BLCA 149901764 + 149901744 149901784 41 TGCAAACCACTAGCCAGTATCTTATCAGGAATGTGGAAACC TGCAAACCACTAGCCAGTATGTTATCAGGAATGTGGAAACC Direct Gain 0 0.931345322416511 NA NA prediction 0.862690644833022 Functional Gain - GINM1 ENSG00000055211 CDS Human protein_coding chr6:149901764 chr6:149901764 nonsynonymous SNV 0.909 1 21 hm7G_associated_SNPs_40867 0 0 1 0 2 GINM1 chr6:149901859 5'GT 149901859 Upstream 96bp 37601 chr8 30032677 30032677 1 + A G SKCM 30032677 + 30032657 30032697 41 GTGATTGGCGAAGGGAACCTAATAGAAGAACAGGCCCTTAT GTGATTGGCGAAGGGAACCTGATAGAAGAACAGGCCCTTAT Direct Gain 0 0.931281197626334 NA NA prediction 0.862562395252669 Functional Gain - DCTN6 ENSG00000104671 CDS Human protein_coding chr8:30032677 chr8:30032677 synonymous SNV . 0 21 hm7G_associated_SNPs_40869 0 0 1 0 2 DCTN6 chr8:30032601 3'AG 30032601 Downstream 77bp 37602 chr8 30032677 30032677 1 + A G SKCM 30032677 + 30032657 30032697 41 GTGATTGGCGAAGGGAACCTAATAGAAGAACAGGCCCTTAT GTGATTGGCGAAGGGAACCTGATAGAAGAACAGGCCCTTAT Direct Gain 0 0.931281197626334 NA NA prediction 0.862562395252669 Functional Gain - DCTN6 ENSG00000104671 CDS Human protein_coding chr8:30032677 chr8:30032677 synonymous SNV . 0 21 hm7G_associated_SNPs_40869 0 0 1 0 2 DCTN6 chr8:30032706 5'GT 30032706 Upstream 30bp 37603 chr20 207923 207923 1 + C G rs112090903 207923 + 207903 207943 41 TCAAGGCTTCCTCTCTGGCACCCAACCATGAAGCTCCTTTT TCAAGGCTTCCTCTCTGGCAGCCAACCATGAAGCTCCTTTT Direct Gain 0 0.931280021607314 NA NA prediction 0.862560043214628 Functional Gain - DEFB129 ENSG00000125903 UTR5 Human protein_coding chr20:207923 chr20:207923 . . 0 21 hm7G_associated_SNPs_40870 0 0 0 0 1 DEFB129 chr20:207987 5'GT 207987 Upstream 65bp 37604 chr2 234173695 234173695 1 + A G rs557331294 234173695 + 234173675 234173715 41 TGGAGGGAAAACTGAGGAAAACTACGGAAGAGAACCAGGAG TGGAGGGAAAACTGAGGAAAGCTACGGAAGAGAACCAGGAG Direct Gain 0 0.931238236712775 NA NA prediction 0.86247647342555 Functional Gain - ATG16L1 ENSG00000085978 CDS Human protein_coding chr2:234173695 chr2:234173695 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40873 0 0 1 0 1 ATG16L1 chr2:234173789 5'GT 234173789 Upstream 95bp 37605 chr6 10697691 10697691 1 + T G STAD 10697691 + 10697671 10697711 41 TATGACATGAAAAAGAAGATTGAGCATGGGGCTCTAGTGCA TATGACATGAAAAAGAAGATGGAGCATGGGGCTCTAGTGCA Direct Gain 0 0.931235857531846 NA NA prediction 0.862471715063692 Functional Gain - PAK1IP1 ENSG00000111845 CDS Human protein_coding chr6:10697691 chr6:10697691 nonsynonymous SNV 0.992 0 21 hm7G_associated_SNPs_40874 0 0 1 0 1 PAK1IP1 chr6:10697719 5'GT 10697719 Upstream 29bp 37606 chr1 87043674 87043674 1 + C G BLCA 87043674 + 87043654 87043694 41 ATAGCTTAAAAGTTCGGGCTCATGGAGGAGCAAACACTGCC ATAGCTTAAAAGTTCGGGCTGATGGAGGAGCAAACACTGCC Direct Gain 0 0.931210682617741 NA NA prediction 0.862421365235483 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87043674 chr1:87043674 nonsynonymous SNV 0.004 0 21 hm7G_associated_SNPs_40876 0 0 0 0 2 CLCA4 chr1:87043585 3'AG 87043585 Downstream 90bp 37607 chr1 87043674 87043674 1 + C G BLCA 87043674 + 87043654 87043694 41 ATAGCTTAAAAGTTCGGGCTCATGGAGGAGCAAACACTGCC ATAGCTTAAAAGTTCGGGCTGATGGAGGAGCAAACACTGCC Direct Gain 0 0.931210682617741 NA NA prediction 0.862421365235483 Functional Gain - CLCA4 ENSG00000016602 CDS Human protein_coding chr1:87043674 chr1:87043674 nonsynonymous SNV 0.004 0 21 hm7G_associated_SNPs_40876 0 0 0 0 2 CLCA4 chr1:87043755 5'GT 87043755 Upstream 82bp 37608 chr11 62189796 62189796 1 + A G LIHC 62189796 + 62189776 62189816 41 GAACTTTTCAGCCCTGATCAAGACATGAGGGAGGCAGGGGC GAACTTTTCAGCCCTGATCAGGACATGAGGGAGGCAGGGGC Direct Gain 0 0.931159292431323 NA NA prediction 0.862318584862645 Functional Gain - SCGB1A1 ENSG00000149021 CDS Human protein_coding chr11:62189796 chr11:62189796 synonymous SNV . 0 21 hm7G_associated_SNPs_40879 0 0 0 0 1 SCGB1A1 chr11:62189880 5'GT 62189880 Upstream 85bp 37609 chrX 150154150 150154150 1 + A G UCEC 150154150 + 150154130 150154170 41 GTGCAGACATGCAGAGAAGAACATAAGAAGAAAAACCCAGA GTGCAGACATGCAGAGAAGAGCATAAGAAGAAAAACCCAGA Direct Gain 0 0.931118113648822 NA NA prediction 0.862236227297644 Functional Gain - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150154150 chrX:150154150 synonymous SNV . 0 21 hm7G_associated_SNPs_40881 0 0 1 0 2 HMGB3 chrX:150154068 3'AG 150154068 Downstream 83bp 37610 chrX 150154150 150154150 1 + A G UCEC 150154150 + 150154130 150154170 41 GTGCAGACATGCAGAGAAGAACATAAGAAGAAAAACCCAGA GTGCAGACATGCAGAGAAGAGCATAAGAAGAAAAACCCAGA Direct Gain 0 0.931118113648822 NA NA prediction 0.862236227297644 Functional Gain - HMGB3 ENSG00000029993 CDS Human protein_coding chrX:150154150 chrX:150154150 synonymous SNV . 0 21 hm7G_associated_SNPs_40881 0 0 1 0 2 HMGB3 chrX:150154222 5'GT 150154222 Upstream 73bp 37611 chr17 7126021 7126021 1 + C G BLCA 7126021 + 7126001 7126041 41 GAAGATGGGCATCAAGGCTTCAAACACAGCAGAGGTGTTCT GAAGATGGGCATCAAGGCTTGAAACACAGCAGAGGTGTTCT Direct Gain 0 0.931114131366875 NA NA prediction 0.86222826273375 Functional Gain - ACADVL ENSG00000072778 CDS Human protein_coding chr17:7126021 chr17:7126021 stopgain 0.680 1 21 hm7G_associated_SNPs_40882 0 0 1 0 1 ACADVL chr17:7125986 3'AG 7125986 Downstream 36bp 37612 chr7 120593419 120593419 1 + A G STAD 120593419 + 120593399 120593439 41 ATGAATGCAAAGAAAAATAAACCTGAGTGGAGGGAAGAGCA ATGAATGCAAAGAAAAATAAGCCTGAGTGGAGGGAAGAGCA Direct Gain 0 0.931105569889697 NA NA prediction 0.862211139779394 Functional Gain - ING3 ENSG00000071243 CDS Human protein_coding chr7:120593419 chr7:120593419 synonymous SNV . 0 21 hm7G_associated_SNPs_40883 0 0 1 0 2 ING3 chr7:120593358 3'AG 120593358 Downstream 62bp 37613 chr7 120593419 120593419 1 + A G STAD 120593419 + 120593399 120593439 41 ATGAATGCAAAGAAAAATAAACCTGAGTGGAGGGAAGAGCA ATGAATGCAAAGAAAAATAAGCCTGAGTGGAGGGAAGAGCA Direct Gain 0 0.931105569889697 NA NA prediction 0.862211139779394 Functional Gain - ING3 ENSG00000071243 CDS Human protein_coding chr7:120593419 chr7:120593419 synonymous SNV . 0 21 hm7G_associated_SNPs_40883 0 0 1 0 2 ING3 chr7:120593458 5'GT 120593458 Upstream 40bp 37614 chr5 140076157 140076157 1 + C G rs145104612 140076157 + 140076137 140076177 41 TGGTGAAGAAAGGCCTGGCTCCTGAGGTGGCTGATCGAATT TGGTGAAGAAAGGCCTGGCTGCTGAGGTGGCTGATCGAATT Direct Gain 0 0.931078472092415 NA NA prediction 0.862156944184831 Functional Gain - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076157 chr5:140076157 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40887 0 0 1 0 2 HARS2 chr5:140076106 3'AG 140076106 Downstream 52bp 37615 chr5 140076157 140076157 1 + C G rs145104612 140076157 + 140076137 140076177 41 TGGTGAAGAAAGGCCTGGCTCCTGAGGTGGCTGATCGAATT TGGTGAAGAAAGGCCTGGCTGCTGAGGTGGCTGATCGAATT Direct Gain 0 0.931078472092415 NA NA prediction 0.862156944184831 Functional Gain - HARS2 ENSG00000112855 CDS Human protein_coding chr5:140076157 chr5:140076157 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40887 0 0 1 0 2 HARS2 chr5:140076199 5'GT 140076199 Upstream 43bp 37616 chr16 8906896 8906896 1 + A G LUAD 8906896 + 8906876 8906916 41 TGATGGATGGGACAAGAGATACTGTCTGCGACATGTGGAAA TGATGGATGGGACAAGAGATGCTGTCTGCGACATGTGGAAA Direct Gain 0 0.931074152441394 NA NA prediction 0.862148304882788 Functional Gain - PMM2 ENSG00000140650 CDS Human protein_coding chr16:8906896 chr16:8906896 nonsynonymous SNV 0.803 3 21 hm7G_associated_SNPs_40888 0 0 1 1 2 PMM2 chr16:8906848 3'AG 8906848 Downstream 49bp 37617 chr16 8906896 8906896 1 + A G LUAD 8906896 + 8906876 8906916 41 TGATGGATGGGACAAGAGATACTGTCTGCGACATGTGGAAA TGATGGATGGGACAAGAGATGCTGTCTGCGACATGTGGAAA Direct Gain 0 0.931074152441394 NA NA prediction 0.862148304882788 Functional Gain - PMM2 ENSG00000140650 CDS Human protein_coding chr16:8906896 chr16:8906896 nonsynonymous SNV 0.803 3 21 hm7G_associated_SNPs_40888 0 0 1 1 2 PMM2 chr16:8906963 5'GT 8906963 Upstream 68bp 37618 chr10 82126484 82126484 1 + T G STAD 82126484 + 82126464 82126504 41 TTCCACGAAGAAGACCATATTCATGCAGGAGGACACAAACC TTCCACGAAGAAGACCATATGCATGCAGGAGGACACAAACC Direct Gain 0 0.931056601833234 NA NA prediction 0.862113203666468 Functional Gain - DYDC2 ENSG00000133665 CDS Human protein_coding chr10:82126484 chr10:82126484 nonsynonymous SNV 0.005 1 21 hm7G_associated_SNPs_40889 0 0 0 1 1 DYDC2 chr10:82126444 3'AG 82126444 Downstream 41bp 37619 chr20 55088446 55088446 1 + A G LUSC 55088446 + 55088426 55088466 41 ATGTGGACGTGCTGAAGACAAGGATGGAGGAGAGAAGGCTG ATGTGGACGTGCTGAAGACAGGGATGGAGGAGAGAAGGCTG Direct Gain 0 0.931037947607647 NA NA prediction 0.862075895215295 Functional Gain - RTFDC1 ENSG00000022277 CDS Human protein_coding chr20:55088446 chr20:55088446 nonsynonymous SNV 0.959 3 21 hm7G_associated_SNPs_40892 0 0 1 0 1 RTFDC1 chr20:55088484 5'GT 55088484 Upstream 39bp 37620 chr1 119923779 119923779 1 + T G COAD 119923779 + 119923759 119923799 41 GTCTAAGTCAACTCGGGATTTTATTGAAGGTGGAGCAGATG GTCTAAGTCAACTCGGGATTGTATTGAAGGTGGAGCAGATG Direct Gain 0 0.930980156904351 NA NA prediction 0.861960313808703 Functional Gain - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119923779 chr1:119923779 nonsynonymous SNV 0.926 3 21 hm7G_associated_SNPs_40893 0 0 0 0 2 HAO2 chr1:119923701 3'AG 119923701 Downstream 79bp 37621 chr1 119923779 119923779 1 + T G COAD 119923779 + 119923759 119923799 41 GTCTAAGTCAACTCGGGATTTTATTGAAGGTGGAGCAGATG GTCTAAGTCAACTCGGGATTGTATTGAAGGTGGAGCAGATG Direct Gain 0 0.930980156904351 NA NA prediction 0.861960313808703 Functional Gain - HAO2 ENSG00000116882 CDS Human protein_coding chr1:119923779 chr1:119923779 nonsynonymous SNV 0.926 3 21 hm7G_associated_SNPs_40893 0 0 0 0 2 HAO2 chr1:119923839 5'GT 119923839 Upstream 61bp 37622 chr4 3015478 3015478 1 + A G STAD 3015478 + 3015458 3015498 41 GCAAAAAGCTACAAAAAAAAAGAATAAAGAAGAGGAAAGGT GCAAAAAGCTACAAAAAAAAGGAATAAAGAAGAGGAAAGGT Direct Gain 0 0.930945591752618 NA NA prediction 0.861891183505236 Functional Gain - GRK4 ENSG00000125388 CDS Human protein_coding chr4:3015478 chr4:3015478 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_40896 0 0 0 0 2 GRK4 chr4:3015415 3'AG 3015415 Downstream 64bp 37623 chr4 3015478 3015478 1 + A G STAD 3015478 + 3015458 3015498 41 GCAAAAAGCTACAAAAAAAAAGAATAAAGAAGAGGAAAGGT GCAAAAAGCTACAAAAAAAAGGAATAAAGAAGAGGAAAGGT Direct Gain 0 0.930945591752618 NA NA prediction 0.861891183505236 Functional Gain - GRK4 ENSG00000125388 CDS Human protein_coding chr4:3015478 chr4:3015478 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_40896 0 0 0 0 2 GRK4 chr4:3015555 5'GT 3015555 Upstream 78bp 37624 chr7 23163416 23163416 1 + C G rs139162761 23163416 + 23163396 23163436 41 AAAACGTTGTGTGACGTGATCCTCATGGTCCAGGAAAGAAA AAAACGTTGTGTGACGTGATGCTCATGGTCCAGGAAAGAAA Direct Gain 0 0.930944373255149 NA NA prediction 0.861888746510297 Functional Gain - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23163416 chr7:23163416 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_40897 0 0 1 0 2 KLHL7 chr7:23163396 3'AG 23163396 Downstream 21bp 37625 chr7 23163416 23163416 1 + C G rs139162761 23163416 + 23163396 23163436 41 AAAACGTTGTGTGACGTGATCCTCATGGTCCAGGAAAGAAA AAAACGTTGTGTGACGTGATGCTCATGGTCCAGGAAAGAAA Direct Gain 0 0.930944373255149 NA NA prediction 0.861888746510297 Functional Gain - KLHL7 ENSG00000122550 CDS Human protein_coding chr7:23163416 chr7:23163416 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_40897 0 0 1 0 2 KLHL7 chr7:23163498 5'GT 23163498 Upstream 83bp 37626 chr15 98514373 98514373 1 + C G LUSC 98514373 + 98514353 98514393 41 TTTTGCAGGTTGACCCACATCCTAGCGACGTAGAAGAGAGC TTTTGCAGGTTGACCCACATGCTAGCGACGTAGAAGAGAGC Direct Gain 0 0.930920640631196 NA NA prediction 0.861841281262393 Functional Gain - ARRDC4 ENSG00000140450 CDS Human protein_coding chr15:98514373 chr15:98514373 nonsynonymous SNV 0.796 1 21 hm7G_associated_SNPs_40898 0 0 1 0 1 ARRDC4 chr15:98514361 3'AG 98514361 Downstream 13bp 37627 chr19 917741 917741 1 + A G LUAD 917741 + 917721 917761 41 GCGGACCGTGACCAACTTCTACATCGGTGAGTGCGGGCGCT GCGGACCGTGACCAACTTCTGCATCGGTGAGTGCGGGCGCT Direct Gain 0 0.930861883559398 NA NA prediction 0.861723767118796 Functional Gain - KISS1R ENSG00000116014 CDS Human protein_coding chr19:917741 chr19:917741 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_40901 0 0 1 0 1 KISS1R chr19:917746 5'GT 917746 Upstream 6bp 37628 chr7 31746831 31746831 1 + C G HNSC 31746831 + 31746811 31746851 41 TTTGCAGGTGTGACATTGCTCAGGGACGAGAGACCCAAAGC TTTGCAGGTGTGACATTGCTGAGGGACGAGAGACCCAAAGC Direct Gain 0 0.930856971315452 NA NA prediction 0.861713942630904 Functional Gain - PPP1R17 ENSG00000106341 CDS Human protein_coding chr7:31746831 chr7:31746831 synonymous SNV . 0 21 hm7G_associated_SNPs_40902 0 0 0 0 1 PPP1R17 chr7:31746818 3'AG 31746818 Downstream 14bp 37629 chr2 55746985 55746985 1 + C G BLCA 55746985 + 55746965 55747005 41 GAGTGGGTAGTGGAGAGCATCGCGGGGTTCCTGCGAGGCCC GAGTGGGTAGTGGAGAGCATGGCGGGGTTCCTGCGAGGCCC Direct Gain 0 0.930843911993673 NA NA prediction 0.861687823987347 Functional Gain - CFAP36 ENSG00000163001 CDS Human protein_coding chr2:55746985 chr2:55746985 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40903 0 0 1 0 1 CFAP36 chr2:55747052 5'GT 55747052 Upstream 68bp 37630 chr1 180241097 180241097 1 + C G BLCA 180241097 + 180241077 180241117 41 CAAGCAGGAGAAGGAGAGCTCTGCAGAGGACTGTGGGGTTA CAAGCAGGAGAAGGAGAGCTGTGCAGAGGACTGTGGGGTTA Direct Gain 0 0.930826497184906 NA NA prediction 0.861652994369813 Functional Gain - LHX4 ENSG00000121454 CDS Human protein_coding chr1:180241097 chr1:180241097 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_40906 0 0 0 0 1 LHX4 chr1:180241141 5'GT 180241141 Upstream 45bp 37631 chr7 129040190 129040190 1 + A G STAD 129040190 + 129040170 129040210 41 ACTTTTGGTGGTGTATCGATAGATGTGTGAATGTGGAGGGC ACTTTTGGTGGTGTATCGATGGATGTGTGAATGTGGAGGGC Direct Gain 0 0.930825081137864 NA NA prediction 0.861650162275727 Functional Gain - AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129040190 chr7:129040190 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40907 0 0 1 0 2 AHCYL2 chr7:129040131 3'AG 129040131 Downstream 60bp 37632 chr7 129040190 129040190 1 + A G STAD 129040190 + 129040170 129040210 41 ACTTTTGGTGGTGTATCGATAGATGTGTGAATGTGGAGGGC ACTTTTGGTGGTGTATCGATGGATGTGTGAATGTGGAGGGC Direct Gain 0 0.930825081137864 NA NA prediction 0.861650162275727 Functional Gain - AHCYL2 ENSG00000158467 CDS Human protein_coding chr7:129040190 chr7:129040190 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40907 0 0 1 0 2 AHCYL2 chr7:129040225 5'GT 129040225 Upstream 36bp 37633 chr12 57486281 57486281 1 + C G LUSC 57486281 + 57486261 57486301 41 TGCATGAGGGACAACACGCTCTTATTACGGAGAGTGGAGCT TGCATGAGGGACAACACGCTGTTATTACGGAGAGTGGAGCT Direct Gain 0 0.930821584511492 NA NA prediction 0.861643169022985 Functional Gain - NAB2 ENSG00000166886 CDS Human protein_coding chr12:57486281 chr12:57486281 synonymous SNV . 0 21 hm7G_associated_SNPs_40908 0 0 0 0 2 NAB2 chr12:57486231 3'AG 57486231 Downstream 51bp 37634 chr12 57486281 57486281 1 + C G LUSC 57486281 + 57486261 57486301 41 TGCATGAGGGACAACACGCTCTTATTACGGAGAGTGGAGCT TGCATGAGGGACAACACGCTGTTATTACGGAGAGTGGAGCT Direct Gain 0 0.930821584511492 NA NA prediction 0.861643169022985 Functional Gain - NAB2 ENSG00000166886 CDS Human protein_coding chr12:57486281 chr12:57486281 synonymous SNV . 0 21 hm7G_associated_SNPs_40908 0 0 0 0 2 NAB2 chr12:57486364 5'GT 57486364 Upstream 84bp 37635 chr19 54444760 54444760 1 + C G OV 54444760 + 54444740 54444780 41 GGGCTTGGTTCTTTACATCTCCAGCATCAACGACGAGGTCA GGGCTTGGTTCTTTACATCTGCAGCATCAACGACGAGGTCA Direct Gain 0 0.930799806886772 NA NA prediction 0.861599613773544 Functional Gain - CACNG7 ENSG00000105605 CDS Human protein_coding chr19:54444760 chr19:54444760 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_40909 0 0 0 0 1 CACNG7 chr19:54444724 3'AG 54444724 Downstream 37bp 37636 chr2 68401898 68401898 1 + T G KIRC 68401898 + 68401878 68401918 41 TCCAAGGTTTATGGCAATATTCGAGCTGTGGCTAGCAGATC TCCAAGGTTTATGGCAATATGCGAGCTGTGGCTAGCAGATC Direct Gain 0 0.930797831490406 NA NA prediction 0.861595662980812 Functional Gain - PNO1 ENSG00000115946 CDS Human protein_coding chr2:68401898 chr2:68401898 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_40910 0 0 1 0 1 PNO1 chr2:68401867 3'AG 68401867 Downstream 32bp 37637 chr5 170837534 170837534 1 + A G LIHC 170837534 + 170837514 170837554 41 TTTTTTTTTTTTTCCAGGCTATTCAAGATCTCTGGCAGTGG TTTTTTTTTTTTTCCAGGCTGTTCAAGATCTCTGGCAGTGG Direct Gain 0 0.93078924709393 NA NA prediction 0.86157849418786 Functional Gain - NPM1 ENSG00000181163 CDS Human protein_coding chr5:170837534 chr5:170837534 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_40911 0 0 1 0 1 NPM1 chr5:170837531 3'AG 170837531 Downstream 4bp 37638 chr12 4385304 4385304 1 + C G KIRC 4385304 + 4385284 4385324 41 TGTCTGCATGTTCCTGGCCTCCAAACTCAAAGAGACCAGCC TGTCTGCATGTTCCTGGCCTGCAAACTCAAAGAGACCAGCC Direct Gain 0 0.930769710318539 NA NA prediction 0.861539420637077 Functional Gain - CCND2 ENSG00000118971 CDS Human protein_coding chr12:4385304 chr12:4385304 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_40912 0 0 1 0 1 CCND2 chr12:4385386 5'GT 4385386 Upstream 83bp 37639 chr1 151546762 151546762 1 + A G STAD 151546762 + 151546742 151546782 41 TTAGGTCACACTCAGCCGGTACCAGAGGGAAGCAGAACAAA TTAGGTCACACTCAGCCGGTGCCAGAGGGAAGCAGAACAAA Direct Gain 0 0.930765738733593 NA NA prediction 0.861531477467185 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151546762 chr1:151546762 nonsynonymous SNV 0.945 2 21 hm7G_associated_SNPs_40913 0 0 1 0 1 TUFT1 chr1:151546746 3'AG 151546746 Downstream 17bp 37640 chr5 74646089 74646089 1 + C G SKCM 74646089 + 74646069 74646109 41 GACTTAATTTGTAGCTTTCTCGGGAAAGCCGCGAGGGTCGT GACTTAATTTGTAGCTTTCTGGGGAAAGCCGCGAGGGTCGT Direct Gain 0 0.930755725522065 NA NA prediction 0.861511451044129 Functional Gain - HMGCR ENSG00000113161 CDS Human protein_coding chr5:74646089 chr5:74646089 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40915 0 0 1 0 1 HMGCR chr5:74646083 3'AG 74646083 Downstream 7bp 37641 chr2 38903075 38903075 1 + A G COAD 38903075 + 38903055 38903095 41 ATACCTCCAAAAGCAGCCATACTTTGGAGCAGTTATTGGGA ATACCTCCAAAAGCAGCCATGCTTTGGAGCAGTTATTGGGA Direct Gain 0 0.930740604420091 NA NA prediction 0.861481208840183 Functional Gain - GALM ENSG00000143891 CDS Human protein_coding chr2:38903075 chr2:38903075 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_40918 0 0 1 0 1 GALM chr2:38903054 3'AG 38903054 Downstream 22bp 37642 chr20 39797733 39797733 1 + A G SARC 39797733 + 39797713 39797753 41 CCACAGGTGGCGAGGGGACTACGGAGGGAAGAAGCAGCTGT CCACAGGTGGCGAGGGGACTGCGGAGGGAAGAAGCAGCTGT Direct Gain 0 0.930700039102386 NA NA prediction 0.861400078204772 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39797733 chr20:39797733 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_40919 0 0 1 0 2 PLCG1 chr20:39797719 3'AG 39797719 Downstream 15bp 37643 chr20 39797733 39797733 1 + A G SARC 39797733 + 39797713 39797753 41 CCACAGGTGGCGAGGGGACTACGGAGGGAAGAAGCAGCTGT CCACAGGTGGCGAGGGGACTGCGGAGGGAAGAAGCAGCTGT Direct Gain 0 0.930700039102386 NA NA prediction 0.861400078204772 Functional Gain - PLCG1 ENSG00000124181 CDS Human protein_coding chr20:39797733 chr20:39797733 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_40919 0 0 1 0 2 PLCG1 chr20:39797815 5'GT 39797815 Upstream 83bp 37644 chr1 153631989 153631989 1 + C G KIRP 153631989 + 153631969 153632009 41 ACCCCTATGTTAAGAAGCTACTTAATGCCCGGCGACGCGTT ACCCCTATGTTAAGAAGCTAGTTAATGCCCGGCGACGCGTT Direct Gain 0 0.930696844481787 NA NA prediction 0.861393688963574 Functional Gain - SNAPIN ENSG00000143553 CDS Human protein_coding chr1:153631989 chr1:153631989 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_40920 0 0 1 0 2 SNAPIN chr1:153631924 3'AG 153631924 Downstream 66bp 37645 chr1 153631989 153631989 1 + C G KIRP 153631989 + 153631969 153632009 41 ACCCCTATGTTAAGAAGCTACTTAATGCCCGGCGACGCGTT ACCCCTATGTTAAGAAGCTAGTTAATGCCCGGCGACGCGTT Direct Gain 0 0.930696844481787 NA NA prediction 0.861393688963574 Functional Gain - SNAPIN ENSG00000143553 CDS Human protein_coding chr1:153631989 chr1:153631989 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_40920 0 0 1 0 2 SNAPIN chr1:153632042 5'GT 153632042 Upstream 54bp 37646 chr20 139425 139425 1 + A G SKCM 139425 + 139405 139445 41 CTGTGTATAGTAACCGAACAACTTAAGAAGTGCTGGAATAA CTGTGTATAGTAACCGAACAGCTTAAGAAGTGCTGGAATAA Direct Gain 0 0.930655761535663 NA NA prediction 0.861311523071326 Functional Gain - DEFB127 ENSG00000088782 CDS Human protein_coding chr20:139425 chr20:139425 synonymous SNV . 0 21 hm7G_associated_SNPs_40922 0 0 0 0 1 DEFB127 chr20:139415 3'AG 139415 Downstream 11bp 37647 chr3 169694764 169694764 1 + C G BLCA 169694764 + 169694744 169694784 41 AGTGGACTGTCTTTTGGATTCAAAGTGGGCAAAGGCCAAGA AGTGGACTGTCTTTTGGATTGAAAGTGGGCAAAGGCCAAGA Direct Gain 0 0.930594710373654 NA NA prediction 0.861189420747308 Functional Gain - SEC62 ENSG00000008952 CDS Human protein_coding chr3:169694764 chr3:169694764 stopgain 1.000 1 21 hm7G_associated_SNPs_40925 0 0 1 0 2 SEC62 chr3:169694734 3'AG 169694734 Downstream 31bp 37648 chr3 169694764 169694764 1 + C G BLCA 169694764 + 169694744 169694784 41 AGTGGACTGTCTTTTGGATTCAAAGTGGGCAAAGGCCAAGA AGTGGACTGTCTTTTGGATTGAAAGTGGGCAAAGGCCAAGA Direct Gain 0 0.930594710373654 NA NA prediction 0.861189420747308 Functional Gain - SEC62 ENSG00000008952 CDS Human protein_coding chr3:169694764 chr3:169694764 stopgain 1.000 1 21 hm7G_associated_SNPs_40925 0 0 1 0 2 SEC62 chr3:169694839 5'GT 169694839 Upstream 76bp 37649 chr1 24112241 24112241 1 + C G LUAD 24112241 + 24112221 24112261 41 CCTTTAGTCTGAACCGGGATCTTACAGGAGAATTAGAGTAT CCTTTAGTCTGAACCGGGATGTTACAGGAGAATTAGAGTAT Direct Gain 0 0.930570198372928 NA NA prediction 0.861140396745855 Functional Gain - PITHD1 ENSG00000057757 CDS Human protein_coding chr1:24112241 chr1:24112241 nonsynonymous SNV 0.934 0 21 hm7G_associated_SNPs_40926 0 0 1 0 2 PITHD1 chr1:24112165 3'AG 24112165 Downstream 77bp 37650 chr1 24112241 24112241 1 + C G LUAD 24112241 + 24112221 24112261 41 CCTTTAGTCTGAACCGGGATCTTACAGGAGAATTAGAGTAT CCTTTAGTCTGAACCGGGATGTTACAGGAGAATTAGAGTAT Direct Gain 0 0.930570198372928 NA NA prediction 0.861140396745855 Functional Gain - PITHD1 ENSG00000057757 CDS Human protein_coding chr1:24112241 chr1:24112241 nonsynonymous SNV 0.934 0 21 hm7G_associated_SNPs_40926 0 0 1 0 2 PITHD1 chr1:24112269 5'GT 24112269 Upstream 29bp 37651 chr12 50480099 50480099 1 + C G STAD 50480099 + 50480079 50480119 41 CCTCAGCAGATCCAGCAGGTCCAGCAGCAGGCGGTCCAAAA CCTCAGCAGATCCAGCAGGTGCAGCAGCAGGCGGTCCAAAA Direct Gain 0 0.930564956209389 NA NA prediction 0.861129912418779 Functional Gain - SMARCD1 ENSG00000066117 CDS Human protein_coding chr12:50480099 chr12:50480099 synonymous SNV . 0 21 hm7G_associated_SNPs_40928 0 0 1 0 1 SMARCD1 chr12:50480131 5'GT 50480131 Upstream 33bp 37652 chr11 22363248 22363248 1 + C G LUAD 22363248 + 22363228 22363268 41 TTCTGCATCTCCTTCGGTATCCGCTGCAACCTGGGCGTGGC TTCTGCATCTCCTTCGGTATGCGCTGCAACCTGGGCGTGGC Direct Gain 0 0.93055486754324 NA NA prediction 0.86110973508648 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22363248 chr11:22363248 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40929 0 0 0 0 1 SLC17A6 chr11:22363326 5'GT 22363326 Upstream 79bp 37653 chr4 142145644 142145644 1 + T G CESC 142145644 + 142145624 142145664 41 ATTTTTATATGTTACAGGAATGTGACAAGTGTCAGAGGTAA ATTTTTATATGTTACAGGAAGGTGACAAGTGTCAGAGGTAA Direct Gain 0 0.93054896892709 NA NA prediction 0.861097937854179 Functional Gain - ZNF330 ENSG00000109445 CDS Human protein_coding chr4:142145644 chr4:142145644 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40930 0 0 1 0 2 ZNF330 chr4:142145641 3'AG 142145641 Downstream 4bp 37654 chr4 142145644 142145644 1 + T G CESC 142145644 + 142145624 142145664 41 ATTTTTATATGTTACAGGAATGTGACAAGTGTCAGAGGTAA ATTTTTATATGTTACAGGAAGGTGACAAGTGTCAGAGGTAA Direct Gain 0 0.93054896892709 NA NA prediction 0.861097937854179 Functional Gain - ZNF330 ENSG00000109445 CDS Human protein_coding chr4:142145644 chr4:142145644 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40930 0 0 1 0 2 ZNF330 chr4:142145660 5'GT 142145660 Upstream 17bp 37655 chr8 55049131 55049131 1 + A G rs117264028 55049131 + 55049111 55049151 41 GCAGAGGCCATAAAGGAGAAAGGCAAAGAGGAACCCGGCCC GCAGAGGCCATAAAGGAGAAGGGCAAAGAGGAACCCGGCCC Direct Gain 0 0.930542483624495 NA NA prediction 0.86108496724899 Functional Gain - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55049131 chr8:55049131 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_40931 0 0 1 0 2 MRPL15 chr8:55049071 3'AG 55049071 Downstream 61bp 37656 chr8 55049131 55049131 1 + A G rs117264028 55049131 + 55049111 55049151 41 GCAGAGGCCATAAAGGAGAAAGGCAAAGAGGAACCCGGCCC GCAGAGGCCATAAAGGAGAAGGGCAAAGAGGAACCCGGCCC Direct Gain 0 0.930542483624495 NA NA prediction 0.86108496724899 Functional Gain - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55049131 chr8:55049131 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_40931 0 0 1 0 2 MRPL15 chr8:55049225 5'GT 55049225 Upstream 95bp 37657 chr4 49000548 49000548 1 + T G HNSC 49000548 + 49000528 49000568 41 GTGGTTTCGTGGTACTGGTTTGATCTGGTGGGTTACAGGTA GTGGTTTCGTGGTACTGGTTGGATCTGGTGGGTTACAGGTA Direct Gain 0 0.930536275159671 NA NA prediction 0.861072550319341 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49000548 chr4:49000548 nonsynonymous SNV 0.308 1 21 hm7G_associated_SNPs_40933 0 0 0 0 2 CWH43 chr4:49000477 3'AG 49000477 Downstream 72bp 37658 chr4 49000548 49000548 1 + T G HNSC 49000548 + 49000528 49000568 41 GTGGTTTCGTGGTACTGGTTTGATCTGGTGGGTTACAGGTA GTGGTTTCGTGGTACTGGTTGGATCTGGTGGGTTACAGGTA Direct Gain 0 0.930536275159671 NA NA prediction 0.861072550319341 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49000548 chr4:49000548 nonsynonymous SNV 0.308 1 21 hm7G_associated_SNPs_40933 0 0 0 0 2 CWH43 chr4:49000565 5'GT 49000565 Upstream 18bp 37659 chr20 10025086 10025086 1 + A G GBM 10025086 + 10025066 10025106 41 GAAGCGTCAAGAGAAGGGGTAGTGGAAATAGTTCGAGGCAT GAAGCGTCAAGAGAAGGGGTGGTGGAAATAGTTCGAGGCAT Direct Gain 0 0.930497778315868 NA NA prediction 0.860995556631736 Functional Gain - ANKEF1 ENSG00000132623 CDS Human protein_coding chr20:10025086 chr20:10025086 synonymous SNV . 0 21 hm7G_associated_SNPs_40934 0 0 1 0 1 ANKEF1 chr20:10025042 3'AG 10025042 Downstream 45bp 37660 chr1 192780193 192780193 1 + C G BLCA 192780193 + 192780173 192780213 41 TGGCTGGCCTGTGAAGACTTCAAAAAAACCAAATCACCCCA TGGCTGGCCTGTGAAGACTTGAAAAAAACCAAATCACCCCA Direct Gain 0 0.930496680589813 NA NA prediction 0.860993361179626 Functional Gain - RGS2 ENSG00000116741 CDS Human protein_coding chr1:192780193 chr1:192780193 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40935 0 0 1 0 2 RGS2 chr1:192780111 3'AG 192780111 Downstream 83bp 37661 chr1 192780193 192780193 1 + C G BLCA 192780193 + 192780173 192780213 41 TGGCTGGCCTGTGAAGACTTCAAAAAAACCAAATCACCCCA TGGCTGGCCTGTGAAGACTTGAAAAAAACCAAATCACCCCA Direct Gain 0 0.930496680589813 NA NA prediction 0.860993361179626 Functional Gain - RGS2 ENSG00000116741 CDS Human protein_coding chr1:192780193 chr1:192780193 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40935 0 0 1 0 2 RGS2 chr1:192780277 5'GT 192780277 Upstream 85bp 37662 chr3 184024572 184024572 1 + A G rs562725422 184024572 + 184024552 184024592 41 TGGGGATTGCCCTTATTGCTATGGGGGAGGAGATTGGTGCA TGGGGATTGCCCTTATTGCTGTGGGGGAGGAGATTGGTGCA Direct Gain 0 0.930485543219421 NA NA prediction 0.860971086438843 Functional Gain - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184024572 chr3:184024572 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40936 0 0 1 0 2 PSMD2 chr3:184024539 3'AG 184024539 Downstream 34bp 37663 chr3 184024572 184024572 1 + A G rs562725422 184024572 + 184024552 184024592 41 TGGGGATTGCCCTTATTGCTATGGGGGAGGAGATTGGTGCA TGGGGATTGCCCTTATTGCTGTGGGGGAGGAGATTGGTGCA Direct Gain 0 0.930485543219421 NA NA prediction 0.860971086438843 Functional Gain - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184024572 chr3:184024572 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40936 0 0 1 0 2 PSMD2 chr3:184024622 5'GT 184024622 Upstream 51bp 37664 chr17 34893000 34893000 1 + C G LGG 34893000 + 34892980 34893020 41 TGTCAGTAACCTCAATGGAACCACCGTGCTGGAAATCACCC TGTCAGTAACCTCAATGGAAGCACCGTGCTGGAAATCACCC Direct Gain 0 0.93045812017522 NA NA prediction 0.860916240350441 Functional Gain - PIGW ENSG00000184886 CDS Human other chr17:34893000 chr17:34893000 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40937 0 0 1 0 1 PIGW chr17:34892943 3'AG 34892943 Downstream 58bp 37665 chr12 95868070 95868070 1 + A G UCEC 95868070 + 95868050 95868090 41 AGGAAGCAGCCAAGAAAAAAAGACGAAAGAAGAAGAAGAGC AGGAAGCAGCCAAGAAAAAAGGACGAAAGAAGAAGAAGAGC Direct Gain 0 0.930452045337298 NA NA prediction 0.860904090674595 Functional Gain - METAP2 ENSG00000111142 CDS Human protein_coding chr12:95868070 chr12:95868070 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40938 0 0 1 0 1 METAP2 chr12:95868106 5'GT 95868106 Upstream 37bp 37666 chr21 37713699 37713699 1 + A G UCEC 37713699 + 37713679 37713719 41 TAAAAATTATTTTTACAGCTACAAAAATGCAACAGAGTTCG TAAAAATTATTTTTACAGCTGCAAAAATGCAACAGAGTTCG Direct Gain 0 0.930450411352074 NA NA prediction 0.860900822704148 Functional Gain - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37713699 chr21:37713699 nonsynonymous SNV 0.972 1 21 hm7G_associated_SNPs_40939 0 0 1 0 1 MORC3 chr21:37713697 3'AG 37713697 Downstream 3bp 37667 chr19 7742594 7742594 1 + T G LIHC 7742594 + 7742574 7742614 41 ACCATGCAAAGGGTGGTCATTCACGACCCACGAGCCAAGGT ACCATGCAAAGGGTGGTCATGCACGACCCACGAGCCAAGGT Direct Gain 0 0.930438658320524 NA NA prediction 0.860877316641048 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742594 chr19:7742594 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_40941 0 0 0 0 2 MCEMP1 chr19:7742523 3'AG 7742523 Downstream 72bp 37668 chr19 7742594 7742594 1 + T G LIHC 7742594 + 7742574 7742614 41 ACCATGCAAAGGGTGGTCATTCACGACCCACGAGCCAAGGT ACCATGCAAAGGGTGGTCATGCACGACCCACGAGCCAAGGT Direct Gain 0 0.930438658320524 NA NA prediction 0.860877316641048 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742594 chr19:7742594 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_40941 0 0 0 0 2 MCEMP1 chr19:7742612 5'GT 7742612 Upstream 19bp 37669 chr8 99962913 99962913 1 + A G UCEC 99962913 + 99962893 99962933 41 TTCCAAAGAAAAACCCTTCAAATGTCAGGAGTGTGGGAAAG TTCCAAAGAAAAACCCTTCAGATGTCAGGAGTGTGGGAAAG Direct Gain 0 0.930429103781163 NA NA prediction 0.860858207562325 Functional Gain - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99962913 chr8:99962913 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40943 0 0 0 0 2 OSR2 chr8:99962884 3'AG 99962884 Downstream 30bp 37670 chr8 99962913 99962913 1 + A G UCEC 99962913 + 99962893 99962933 41 TTCCAAAGAAAAACCCTTCAAATGTCAGGAGTGTGGGAAAG TTCCAAAGAAAAACCCTTCAGATGTCAGGAGTGTGGGAAAG Direct Gain 0 0.930429103781163 NA NA prediction 0.860858207562325 Functional Gain - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99962913 chr8:99962913 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40943 0 0 0 0 2 OSR2 chr8:99962983 5'GT 99962983 Upstream 71bp 37671 chr13 96438246 96438246 1 + C G LUSC 96438246 + 96438226 96438266 41 ATGAAAATGATCAGCAGATTCGAGAAGGTCTAGAGAAAGCA ATGAAAATGATCAGCAGATTGGAGAAGGTCTAGAGAAAGCA Direct Gain 0 0.930420288000823 NA NA prediction 0.860840576001645 Functional Gain - DNAJC3 ENSG00000102580 CDS Human protein_coding chr13:96438246 chr13:96438246 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40944 0 0 1 0 2 DNAJC3 chr13:96438193 3'AG 96438193 Downstream 54bp 37672 chr13 96438246 96438246 1 + C G LUSC 96438246 + 96438226 96438266 41 ATGAAAATGATCAGCAGATTCGAGAAGGTCTAGAGAAAGCA ATGAAAATGATCAGCAGATTGGAGAAGGTCTAGAGAAAGCA Direct Gain 0 0.930420288000823 NA NA prediction 0.860840576001645 Functional Gain - DNAJC3 ENSG00000102580 CDS Human protein_coding chr13:96438246 chr13:96438246 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40944 0 0 1 0 2 DNAJC3 chr13:96438325 5'GT 96438325 Upstream 80bp 37673 chr1 54423862 54423862 1 + T G COAD 54423862 + 54423842 54423882 41 AGCTTGAGGAGATTAAGTCTTTCCGGGAGCTGACCTGCCTG AGCTTGAGGAGATTAAGTCTGTCCGGGAGCTGACCTGCCTG Direct Gain 0 0.930419880598261 NA NA prediction 0.860839761196522 Functional Gain - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54423862 chr1:54423862 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40945 0 0 1 0 2 LRRC42 chr1:54423822 3'AG 54423822 Downstream 41bp 37674 chr1 54423862 54423862 1 + T G COAD 54423862 + 54423842 54423882 41 AGCTTGAGGAGATTAAGTCTTTCCGGGAGCTGACCTGCCTG AGCTTGAGGAGATTAAGTCTGTCCGGGAGCTGACCTGCCTG Direct Gain 0 0.930419880598261 NA NA prediction 0.860839761196522 Functional Gain - LRRC42 ENSG00000116212 CDS Human protein_coding chr1:54423862 chr1:54423862 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40945 0 0 1 0 2 LRRC42 chr1:54423953 5'GT 54423953 Upstream 92bp 37675 chr1 40726640 40726640 1 + T G COAD 40726640 + 40726620 40726660 41 GCTTCTGGTCAGGACTCTATTCAGAGACTGAAGGCACTGTG GCTTCTGGTCAGGACTCTATGCAGAGACTGAAGGCACTGTG Direct Gain 0 0.930393669585943 NA NA prediction 0.860787339171885 Functional Gain - ZMPSTE24 ENSG00000084073 CDS Human protein_coding chr1:40726640 chr1:40726640 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_40946 0 0 1 0 1 ZMPSTE24 chr1:40726657 5'GT 40726657 Upstream 18bp 37676 chr6 88046817 88046817 1 + C G rs370955656 88046817 + 88046797 88046837 41 AGAGAAAGAGTTTCAAAGCCCAGGGCTCAGAGGGGTGCGCA AGAGAAAGAGTTTCAAAGCCGAGGGCTCAGAGGGGTGCGCA Direct Gain 0 0.930391135358027 NA NA prediction 0.860782270716054 Functional Gain - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046817 chr6:88046817 nonsynonymous SNV 0.962 2 21 hm7G_associated_SNPs_40947 0 0 1 0 2 SMIM8 chr6:88046727 3'AG 88046727 Downstream 91bp 37677 chr6 88046817 88046817 1 + C G rs370955656 88046817 + 88046797 88046837 41 AGAGAAAGAGTTTCAAAGCCCAGGGCTCAGAGGGGTGCGCA AGAGAAAGAGTTTCAAAGCCGAGGGCTCAGAGGGGTGCGCA Direct Gain 0 0.930391135358027 NA NA prediction 0.860782270716054 Functional Gain - SMIM8 ENSG00000111850;ENSG00000226524 CDS Human other chr6:88046817 chr6:88046817 nonsynonymous SNV 0.962 2 21 hm7G_associated_SNPs_40947 0 0 1 0 2 SMIM8 chr6:88046884 5'GT 88046884 Upstream 68bp 37678 chr2 26678005 26678005 1 + C G rs114106015 26678005 + 26677985 26678025 41 TTTTCTGTCCAAAGCCTTGTCCTGACCCAGAGGGCCAAGCT TTTTCTGTCCAAAGCCTTGTGCTGACCCAGAGGGCCAAGCT Direct Gain 0 0.930390068986982 NA NA prediction 0.860780137973964 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26678005 chr2:26678005 synonymous SNV . 0 21 hm7G_associated_SNPs_40948 0 0 0 0 2 DRC1 chr2:26677999 3'AG 26677999 Downstream 7bp 37679 chr2 26678005 26678005 1 + C G rs114106015 26678005 + 26677985 26678025 41 TTTTCTGTCCAAAGCCTTGTCCTGACCCAGAGGGCCAAGCT TTTTCTGTCCAAAGCCTTGTGCTGACCCAGAGGGCCAAGCT Direct Gain 0 0.930390068986982 NA NA prediction 0.860780137973964 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26678005 chr2:26678005 synonymous SNV . 0 21 hm7G_associated_SNPs_40948 0 0 0 0 2 DRC1 chr2:26678101 5'GT 26678101 Upstream 97bp 37680 chr5 159854878 159854878 1 + C G LUAD 159854878 + 159854858 159854898 41 GCCCTCTCCACCATGGGAATCCAGTAAGTGAGCAAGTGCCC GCCCTCTCCACCATGGGAATGCAGTAAGTGAGCAAGTGCCC Direct Gain 0 0.930389314120787 NA NA prediction 0.860778628241573 Functional Gain - PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159854878 chr5:159854878 nonsynonymous SNV 0.961 0 21 hm7G_associated_SNPs_40949 0 0 1 0 1 PTTG1 chr5:159854880 5'GT 159854880 Upstream 3bp 37681 chr3 52282458 52282458 1 + C G rs116696868 52282458 + 52282438 52282478 41 GTTTTGTTCAGGGATCACCACATGAGTGGCTGGTGAGTGGG GTTTTGTTCAGGGATCACCAGATGAGTGGCTGGTGAGTGGG Direct Gain 0 0.930349523299354 NA NA prediction 0.860699046598709 Functional Gain - PPM1M ENSG00000164088 CDS Human protein_coding chr3:52282458 chr3:52282458 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_40951 0 0 1 0 1 PPM1M chr3:52282469 5'GT 52282469 Upstream 12bp 37682 chr1 16064426 16064426 1 + C G BLCA 16064426 + 16064406 16064446 41 TCCTCTCTGCTCCCATAGATCAAAACGCAGCTGCAAGCTCA TCCTCTCTGCTCCCATAGATGAAAACGCAGCTGCAAGCTCA Direct Gain 0 0.930334801822674 NA NA prediction 0.860669603645348 Functional Gain - SLC25A34 ENSG00000162461 CDS Human protein_coding chr1:16064426 chr1:16064426 nonsynonymous SNV 0.735 2 21 hm7G_associated_SNPs_40952 0 0 0 0 2 SLC25A34 chr1:16064424 3'AG 16064424 Downstream 3bp 37683 chr1 16064426 16064426 1 + C G BLCA 16064426 + 16064406 16064446 41 TCCTCTCTGCTCCCATAGATCAAAACGCAGCTGCAAGCTCA TCCTCTCTGCTCCCATAGATGAAAACGCAGCTGCAAGCTCA Direct Gain 0 0.930334801822674 NA NA prediction 0.860669603645348 Functional Gain - SLC25A34 ENSG00000162461 CDS Human protein_coding chr1:16064426 chr1:16064426 nonsynonymous SNV 0.735 2 21 hm7G_associated_SNPs_40952 0 0 0 0 2 SLC25A34 chr1:16064489 5'GT 16064489 Upstream 64bp 37684 chr1 11808623 11808623 1 + A G HNSC 11808623 + 11808603 11808643 41 GCTCTCCTGCTGCTTCGTCTACCACATGTACCGGGAGCGCG GCTCTCCTGCTGCTTCGTCTGCCACATGTACCGGGAGCGCG Direct Gain 0 0.930320062541151 NA NA prediction 0.860640125082302 Functional Gain - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808623 chr1:11808623 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40953 0 0 1 0 2 AGTRAP chr1:11808646 5'GT 11808646 Upstream 24bp 37685 chr1 11808623 11808623 1 + A G HNSC 11808623 + 11808603 11808643 41 GCTCTCCTGCTGCTTCGTCTACCACATGTACCGGGAGCGCG GCTCTCCTGCTGCTTCGTCTGCCACATGTACCGGGAGCGCG Direct Gain 0 0.930320062541151 NA NA prediction 0.860640125082302 Functional Gain - AGTRAP ENSG00000177674 CDS Human protein_coding chr1:11808623 chr1:11808623 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_40953 0 0 1 0 2 AGTRAP chr1:11808667 5'GT 11808667 Upstream 45bp 37686 chr1 15978369 15978369 1 + C G BLCA 15978369 + 15978349 15978389 41 AAGAATTAGCAGAAGCCCTTCAAAAATCAGCAGAGGATGCA AAGAATTAGCAGAAGCCCTTGAAAAATCAGCAGAGGATGCA Direct Gain 0 0.93030765554177 NA NA prediction 0.86061531108354 Functional Gain - DDI2 ENSG00000197312 CDS Human protein_coding chr1:15978369 chr1:15978369 nonsynonymous SNV 0.984 0 21 hm7G_associated_SNPs_40954 0 0 1 0 1 DDI2 chr1:15978390 5'GT 15978390 Upstream 22bp 37687 chr2 219314035 219314035 1 + C G HNSC 219314035 + 219314015 219314055 41 CGATGGAAGCAACAAAACCTCAAGAAAGAAAAAGGACTATT CGATGGAAGCAACAAAACCTGAAGAAAGAAAAAGGACTATT Direct Gain 0 0.930304088422599 NA NA prediction 0.860608176845198 Functional Gain - VIL1 ENSG00000127831 CDS Human protein_coding chr2:219314035 chr2:219314035 synonymous SNV . 0 21 hm7G_associated_SNPs_40955 0 0 0 0 1 VIL1 chr2:219313946 3'AG 219313946 Downstream 90bp 37688 chr1 23382467 23382467 1 + C G BLCA 23382467 + 23382447 23382487 41 TATTATAGGCTCTGGGGTCTCAGGCTTGGCAGCAGCTCGAC TATTATAGGCTCTGGGGTCTGAGGCTTGGCAGCAGCTCGAC Direct Gain 0 0.93029905099303 NA NA prediction 0.86059810198606 Functional Gain - KDM1A ENSG00000004487 CDS Human protein_coding chr1:23382467 chr1:23382467 stopgain 0.997 1 21 hm7G_associated_SNPs_40956 0 0 1 0 1 KDM1A chr1:23382425 3'AG 23382425 Downstream 43bp 37689 chrX 49173737 49173737 1 + A G UCEC 49173737 + 49173717 49173757 41 GCCAGGAGATGGGCCTGCCAAATCCAGAGGAGGTGAAAAGG GCCAGGAGATGGGCCTGCCAGATCCAGAGGAGGTGAAAAGG Direct Gain 0 0.9302838196086 NA NA prediction 0.860567639217199 Functional Gain - GAGE10 ENSG00000215274 CDS Human protein_coding chrX:49173737 chrX:49173737 nonsynonymous SNV 0.005 2 21 hm7G_associated_SNPs_40958 0 0 0 0 1 GAGE10 chrX:49173767 5'GT 49173767 Upstream 31bp 37690 chr11 1956113 1956113 1 + C G HNSC 1956113 + 1956093 1956133 41 CAGCTGGAGATTGACAAGTTCGAGTTTGGGGAGAAGCTGAA CAGCTGGAGATTGACAAGTTGGAGTTTGGGGAGAAGCTGAA Direct Gain 0 0.930271632428489 NA NA prediction 0.860543264856978 Functional Gain - TNNT3 ENSG00000130595 CDS Human protein_coding chr11:1956113 chr11:1956113 nonsynonymous SNV 0.718 4 21 hm7G_associated_SNPs_40959 0 0 0 0 1 TNNT3 chr11:1956059 3'AG 1956059 Downstream 55bp 37691 chr2 170663527 170663527 1 + T G UCEC 170663527 + 170663507 170663547 41 CATTGAATCTGCTAAGAAATTTGTAGAGACCCCTGGCCAGA CATTGAATCTGCTAAGAAATGTGTAGAGACCCCTGGCCAGA Direct Gain 0 0.930246283047581 NA NA prediction 0.860492566095163 Functional Gain - SSB ENSG00000138385 CDS Human protein_coding chr2:170663527 chr2:170663527 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40960 0 0 1 0 2 SSB chr2:170663481 3'AG 170663481 Downstream 47bp 37692 chr2 170663527 170663527 1 + T G UCEC 170663527 + 170663507 170663547 41 CATTGAATCTGCTAAGAAATTTGTAGAGACCCCTGGCCAGA CATTGAATCTGCTAAGAAATGTGTAGAGACCCCTGGCCAGA Direct Gain 0 0.930246283047581 NA NA prediction 0.860492566095163 Functional Gain - SSB ENSG00000138385 CDS Human protein_coding chr2:170663527 chr2:170663527 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_40960 0 0 1 0 2 SSB chr2:170663581 5'GT 170663581 Upstream 55bp 37693 chr10 114053590 114053590 1 + T G READ 114053590 + 114053570 114053610 41 AGGAGTGGAAGCCAAAGGGTTAAGCATTAGGTAAGTACATT AGGAGTGGAAGCCAAAGGGTGAAGCATTAGGTAAGTACATT Direct Gain 0 0.930206715583181 NA NA prediction 0.860413431166362 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053590 chr10:114053590 stopgain 0.181 1 21 hm7G_associated_SNPs_40966 0 0 0 0 2 TECTB chr10:114053496 3'AG 114053496 Downstream 95bp 37694 chr10 114053590 114053590 1 + T G READ 114053590 + 114053570 114053610 41 AGGAGTGGAAGCCAAAGGGTTAAGCATTAGGTAAGTACATT AGGAGTGGAAGCCAAAGGGTGAAGCATTAGGTAAGTACATT Direct Gain 0 0.930206715583181 NA NA prediction 0.860413431166362 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053590 chr10:114053590 stopgain 0.181 1 21 hm7G_associated_SNPs_40966 0 0 0 0 2 TECTB chr10:114053599 5'GT 114053599 Upstream 10bp 37695 chr6 12292703 12292703 1 + A G SKCM 12292703 + 12292683 12292723 41 GATGGATAAAGAGTGTGTCTACTTCTGCCACCTGGACATCA GATGGATAAAGAGTGTGTCTGCTTCTGCCACCTGGACATCA Direct Gain 0 0.930201043899617 NA NA prediction 0.860402087799234 Functional Gain - EDN1 ENSG00000078401 CDS Human protein_coding chr6:12292703 chr6:12292703 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40967 0 0 0 0 1 EDN1 chr6:12292742 5'GT 12292742 Upstream 40bp 37696 chr4 111430914 111430914 1 + C G BLCA 111430914 + 111430894 111430934 41 CCCTAAGGAATCAGCCTCATCAAACCAACAGAGGGTGGCCA CCCTAAGGAATCAGCCTCATGAAACCAACAGAGGGTGGCCA Direct Gain 0 0.930199720247773 NA NA prediction 0.860399440495547 Functional Gain - ENPEP ENSG00000138792 CDS Human protein_coding chr4:111430914 chr4:111430914 stopgain 0.703 0 21 hm7G_associated_SNPs_40968 0 0 0 0 1 ENPEP chr4:111430963 5'GT 111430963 Upstream 50bp 37697 chr10 118314941 118314941 1 + C G LUSC 118314941 + 118314921 118314961 41 TGGGCCACCTAGATTTCTTTCCAAATGGAGGAGTGGAAATG TGGGCCACCTAGATTTCTTTGCAAATGGAGGAGTGGAAATG Direct Gain 0 0.930193042219844 NA NA prediction 0.860386084439689 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118314941 chr10:118314941 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40969 0 0 0 0 1 PNLIP chr10:118315019 5'GT 118315019 Upstream 79bp 37698 chr16 88926351 88926351 1 + C G BLCA 88926351 + 88926331 88926371 41 GACGTGATGTGCAACCCCTTCTACAACCCGGGGGACCGCAT GACGTGATGTGCAACCCCTTGTACAACCCGGGGGACCGCAT Direct Gain 0 0.930168461201349 NA NA prediction 0.860336922402698 Functional Gain - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926351 chr16:88926351 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40972 0 0 1 0 2 TRAPPC2L chr16:88926301 3'AG 88926301 Downstream 51bp 37699 chr16 88926351 88926351 1 + C G BLCA 88926351 + 88926331 88926371 41 GACGTGATGTGCAACCCCTTCTACAACCCGGGGGACCGCAT GACGTGATGTGCAACCCCTTGTACAACCCGGGGGACCGCAT Direct Gain 0 0.930168461201349 NA NA prediction 0.860336922402698 Functional Gain - TRAPPC2L ENSG00000167515 CDS Human protein_coding chr16:88926351 chr16:88926351 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40972 0 0 1 0 2 TRAPPC2L chr16:88926380 5'GT 88926380 Upstream 30bp 37700 chr1 28864435 28864435 1 + A G rs2227977 28864435 + 28864415 28864455 41 CCTGTGGAGATGATGGGCAAACAGCTGGAGAACCGTGTGGT CCTGTGGAGATGATGGGCAAGCAGCTGGAGAACCGTGTGGT Direct Gain 0 0.930133448386714 NA NA prediction 0.860266896773429 Functional Gain - RCC1 ENSG00000180198 CDS Human protein_coding chr1:28864435 chr1:28864435 synonymous SNV . 0 21 hm7G_associated_SNPs_40973 0 0 1 0 1 RCC1 chr1:28864344 3'AG 28864344 Downstream 92bp 37701 chr7 97362019 97362019 1 + C G MESO 97362019 + 97361999 97362039 41 TGATGATCTGAATTACTGGTCCGACTGGTACGACAGCGACC TGATGATCTGAATTACTGGTGCGACTGGTACGACAGCGACC Direct Gain 0 0.930126937346105 NA NA prediction 0.86025387469221 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97362019 chr7:97362019 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40974 0 0 0 0 1 TAC1 chr7:97362047 5'GT 97362047 Upstream 29bp 37702 chr8 86115407 86115407 1 + A G STAD 86115407 + 86115387 86115427 41 GCTGAAATTGAAGATCTAGAACTGAAGGAAAGAGAACTTGA GCTGAAATTGAAGATCTAGAGCTGAAGGAAAGAGAACTTGA Direct Gain 0 0.930105178273385 NA NA prediction 0.86021035654677 Functional Gain - E2F5 ENSG00000133740 CDS Human protein_coding chr8:86115407 chr8:86115407 synonymous SNV . 0 21 hm7G_associated_SNPs_40976 0 0 0 0 1 E2F5 chr8:86115329 3'AG 86115329 Downstream 79bp 37703 chr12 109853414 109853414 1 + A G UCEC 109853414 + 109853394 109853434 41 CTATGCAGGAGAGGTCACATACTGCACCAAGGGTGAGTGGC CTATGCAGGAGAGGTCACATGCTGCACCAAGGGTGAGTGGC Direct Gain 0 0.930101636251133 NA NA prediction 0.860203272502266 Functional Gain - MYO1H ENSG00000174527 CDS Human protein_coding chr12:109853414 chr12:109853414 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_40977 0 0 0 0 1 MYO1H chr12:109853331 3'AG 109853331 Downstream 84bp 37704 chr10 12148384 12148384 1 + T G PRAD 12148384 + 12148364 12148404 41 CCAGATCATCTTTGACACATTCATCTCTGGAGGTTGGTGTC CCAGATCATCTTTGACACATGCATCTCTGGAGGTTGGTGTC Direct Gain 0 0.930079262529053 NA NA prediction 0.860158525058105 Functional Gain - DHTKD1 ENSG00000181192 CDS Human protein_coding chr10:12148384 chr10:12148384 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_40978 0 0 0 0 1 DHTKD1 chr10:12148395 5'GT 12148395 Upstream 12bp 37705 chr20 49354431 49354431 1 + C G BLCA 49354431 + 49354411 49354451 41 TCGGTTTTCGCTGGAAAGATCAAAACCTGGAAAATTTGAGG TCGGTTTTCGCTGGAAAGATGAAAACCTGGAAAATTTGAGG Direct Gain 0 0.930045368284097 NA NA prediction 0.860090736568193 Functional Gain - PARD6B ENSG00000124171 CDS Human protein_coding chr20:49354431 chr20:49354431 stopgain 1.000 1 21 hm7G_associated_SNPs_40979 0 0 1 0 1 PARD6B chr20:49354394 3'AG 49354394 Downstream 38bp 37706 chr14 45584108 45584108 1 + C G HNSC 45584108 + 45584088 45584128 41 GACAATATTATCCTCCCCCTCCAACCTGATGGGAAAAATGT GACAATATTATCCTCCCCCTGCAACCTGATGGGAAAAATGT Direct Gain 0 0.930035015135338 NA NA prediction 0.860070030270677 Functional Gain - PRPF39 ENSG00000185246 CDS Human protein_coding chr14:45584108 chr14:45584108 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_40980 0 0 1 0 1 PRPF39 chr14:45584060 3'AG 45584060 Downstream 49bp 37707 chr7 7622969 7622969 1 + C G CESC 7622969 + 7622949 7622989 41 TTGGATATTCGCCGAGCAATCCAAATCCTGAATGAAGGGGC TTGGATATTCGCCGAGCAATGCAAATCCTGAATGAAGGGGC Direct Gain 0 0.930016271898651 NA NA prediction 0.860032543797303 Functional Gain - MIOS ENSG00000164654 CDS Human protein_coding chr7:7622969 chr7:7622969 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_40983 0 0 0 0 1 MIOS chr7:7623003 5'GT 7623003 Upstream 35bp 37708 chr17 74729443 74729443 1 + A G LUSC 74729443 + 74729423 74729463 41 CCAAGGTCCAATTGTGGTCTACTTATCAAGTTAGGAGGCAA CCAAGGTCCAATTGTGGTCTGCTTATCAAGTTAGGAGGCAA Direct Gain 0 0.930009104654594 NA NA prediction 0.860018209309188 Functional Gain - METTL23 ENSG00000181038 CDS Human protein_coding chr17:74729443 chr17:74729443 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_40984 0 0 1 1 1 METTL23 chr17:74729375 3'AG 74729375 Downstream 69bp 37709 chr2 88402622 88402622 1 + A G BLCA 88402622 + 88402602 88402642 41 TGATACAATTCTCCAAGGATACATTGGAAAAGATAGACAAG TGATACAATTCTCCAAGGATGCATTGGAAAAGATAGACAAG Direct Gain 0 0.929991035296031 NA NA prediction 0.859982070592062 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88402622 chr2:88402622 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_40987 0 0 0 0 2 SMYD1 chr2:88402577 3'AG 88402577 Downstream 46bp 37710 chr2 88402622 88402622 1 + A G BLCA 88402622 + 88402602 88402642 41 TGATACAATTCTCCAAGGATACATTGGAAAAGATAGACAAG TGATACAATTCTCCAAGGATGCATTGGAAAAGATAGACAAG Direct Gain 0 0.929991035296031 NA NA prediction 0.859982070592062 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88402622 chr2:88402622 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_40987 0 0 0 0 2 SMYD1 chr2:88402669 5'GT 88402669 Upstream 48bp 37711 chr19 36159435 36159435 1 + C G BLCA 36159435 + 36159415 36159455 41 ATACCCACTGATGGGAGTCTCAGGCAAGGATGACGTCTTCG ATACCCACTGATGGGAGTCTGAGGCAAGGATGACGTCTTCG Direct Gain 0 0.929978761617403 NA NA prediction 0.859957523234806 Functional Gain - UPK1A ENSG00000105668 CDS Human protein_coding chr19:36159435 chr19:36159435 stopgain 0.986 1 21 hm7G_associated_SNPs_40988 0 0 0 0 1 UPK1A chr19:36159356 3'AG 36159356 Downstream 80bp 37712 chr4 79516549 79516549 1 + A G KIRP 79516549 + 79516529 79516569 41 GTTTAGGGCAGAAGAGATGAAAGTCTGAAAGTGGATGAGCA GTTTAGGGCAGAAGAGATGAGAGTCTGAAAGTGGATGAGCA Direct Gain 0 0.929968958791858 NA NA prediction 0.859937917583717 Functional Gain - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79516549 chr4:79516549 synonymous SNV . 0 21 hm7G_associated_SNPs_40990 0 0 0 0 2 ANXA3 chr4:79516535 3'AG 79516535 Downstream 15bp 37713 chr4 79516549 79516549 1 + A G KIRP 79516549 + 79516529 79516569 41 GTTTAGGGCAGAAGAGATGAAAGTCTGAAAGTGGATGAGCA GTTTAGGGCAGAAGAGATGAGAGTCTGAAAGTGGATGAGCA Direct Gain 0 0.929968958791858 NA NA prediction 0.859937917583717 Functional Gain - ANXA3 ENSG00000138772 CDS Human protein_coding chr4:79516549 chr4:79516549 synonymous SNV . 0 21 hm7G_associated_SNPs_40990 0 0 0 0 2 ANXA3 chr4:79516591 5'GT 79516591 Upstream 43bp 37714 chr10 5260719 5260719 1 + A G UCEC 5260719 + 5260699 5260739 41 TTATCCATTTTCAGATGAATATTAGCATAGAGGGTGTTGCA TTATCCATTTTCAGATGAATGTTAGCATAGAGGGTGTTGCA Direct Gain 0 0.929944446723325 NA NA prediction 0.859888893446651 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5260719 chr10:5260719 nonsynonymous SNV 0.080 4 21 hm7G_associated_SNPs_40991 0 0 0 0 1 AKR1C4 chr10:5260681 3'AG 5260681 Downstream 39bp 37715 chr17 7126511 7126511 1 + C G LUAD 7126511 + 7126491 7126531 41 ATTCACAACTTTGGGCTGATCCAGGAGAAGCTGGCACGGAT ATTCACAACTTTGGGCTGATGCAGGAGAAGCTGGCACGGAT Direct Gain 0 0.929910930720659 NA NA prediction 0.859821861441319 Functional Gain - ACADVL ENSG00000072778 CDS Human protein_coding chr17:7126511 chr17:7126511 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_40994 0 0 1 0 1 ACADVL chr17:7126452 3'AG 7126452 Downstream 60bp 37716 chr13 113975899 113975899 1 + C G SKCM 113975899 + 113975879 113975919 41 CTTTAAAGCTGCCAACGGCTCCCTGCGAGCGCTGCAGGCCA CTTTAAAGCTGCCAACGGCTGCCTGCGAGCGCTGCAGGCCA Direct Gain 0 0.929893288846447 NA NA prediction 0.859786577692893 Functional Gain - LAMP1 ENSG00000185896 CDS Human protein_coding chr13:113975899 chr13:113975899 nonsynonymous SNV 0.003 4 21 hm7G_associated_SNPs_40995 0 0 1 0 1 LAMP1 chr13:113975872 3'AG 113975872 Downstream 28bp 37717 chr19 2271908 2271908 1 + A G BLCA 2271908 + 2271888 2271928 41 GCTGAGTGGCGGCAGCCTCTACATCGAGATCCCGGGCGGCG GCTGAGTGGCGGCAGCCTCTGCATCGAGATCCCGGGCGGCG Direct Gain 0 0.929867223153526 NA NA prediction 0.859734446307052 Functional Gain - OAZ1 ENSG00000104904 CDS Human protein_coding chr19:2271908 chr19:2271908 nonsynonymous SNV 0.956 3 21 hm7G_associated_SNPs_40997 0 0 1 0 1 OAZ1 chr19:2271953 5'GT 2271953 Upstream 46bp 37718 chr7 12620766 12620766 1 + A G rs189312864 12620766 + 12620746 12620786 41 TCCTACATGTGAAGGGTCGTAGAGTGGTGAGAGCCACAGAA TCCTACATGTGAAGGGTCGTGGAGTGGTGAGAGCCACAGAA Direct Gain 0 0.929833506141765 NA NA prediction 0.859667012283531 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12620766 chr7:12620766 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_40999 0 0 0 1 2 SCIN chr7:12620685 3'AG 12620685 Downstream 82bp 37719 chr7 12620766 12620766 1 + A G rs189312864 12620766 + 12620746 12620786 41 TCCTACATGTGAAGGGTCGTAGAGTGGTGAGAGCCACAGAA TCCTACATGTGAAGGGTCGTGGAGTGGTGAGAGCCACAGAA Direct Gain 0 0.929833506141765 NA NA prediction 0.859667012283531 Functional Gain - SCIN ENSG00000006747 CDS Human protein_coding chr7:12620766 chr7:12620766 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_40999 0 0 0 1 2 SCIN chr7:12620846 5'GT 12620846 Upstream 81bp 37720 chr4 48490485 48490485 1 + C G CESC 48490485 + 48490465 48490505 41 GTGACTCTGGTGGTCCTTTTCATAATGACCGGCACTATGTT GTGACTCTGGTGGTCCTTTTGATAATGACCGGCACTATGTT Direct Gain 0 0.929832259330026 NA NA prediction 0.859664518660052 Functional Gain - SLC10A4 ENSG00000145248 CDS Human protein_coding chr4:48490485 chr4:48490485 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_41001 0 0 0 0 1 SLC10A4 chr4:48490444 3'AG 48490444 Downstream 42bp 37721 chr17 7350871 7350871 1 + C G CESC 7350871 + 7350851 7350891 41 TTGCACTATGGTGTTCAGCTCCTACAGCTACGACAGCTCGG TTGCACTATGGTGTTCAGCTGCTACAGCTACGACAGCTCGG Direct Gain 0 0.929771616598178 NA NA prediction 0.859543233196356 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350871 chr17:7350871 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_41004 0 0 0 0 2 CHRNB1 chr17:7350822 3'AG 7350822 Downstream 50bp 37722 chr17 7350871 7350871 1 + C G CESC 7350871 + 7350851 7350891 41 TTGCACTATGGTGTTCAGCTCCTACAGCTACGACAGCTCGG TTGCACTATGGTGTTCAGCTGCTACAGCTACGACAGCTCGG Direct Gain 0 0.929771616598178 NA NA prediction 0.859543233196356 Functional Gain - CHRNB1 ENSG00000170175 CDS Human protein_coding chr17:7350871 chr17:7350871 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_41004 0 0 0 0 2 CHRNB1 chr17:7350969 5'GT 7350969 Upstream 99bp 37723 chr7 138264006 138264006 1 + A G UCEC 138264006 + 138263986 138264026 41 TAAATAGCAGTCAGAGCTCTACTTCTGAGGAGACTGTGCTA TAAATAGCAGTCAGAGCTCTGCTTCTGAGGAGACTGTGCTA Direct Gain 0 0.929769718115679 NA NA prediction 0.859539436231359 Functional Gain - TRIM24 ENSG00000122779 CDS Human protein_coding chr7:138264006 chr7:138264006 nonsynonymous SNV 0.881 0 21 hm7G_associated_SNPs_41005 0 0 1 0 1 TRIM24 chr7:138263949 3'AG 138263949 Downstream 58bp 37724 chr2 55460509 55460509 1 + C G HNSC 55460509 + 55460489 55460529 41 ACACTCATAGGTTGAACCCTCGGATACGATAGAAAATGTAA ACACTCATAGGTTGAACCCTGGGATACGATAGAAAATGTAA Direct Gain 0 0.929761492423105 NA NA prediction 0.85952298484621 Functional Gain - RPS27A ENSG00000143947 CDS Human protein_coding chr2:55460509 chr2:55460509 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_41006 0 0 1 0 1 RPS27A chr2:55460499 3'AG 55460499 Downstream 11bp 37725 chr8 56702797 56702797 1 + A G UCEC 56702797 + 56702777 56702817 41 ACAGACCACATGCCAGTGGTACTGATGGAGATGAAAGTGAG ACAGACCACATGCCAGTGGTGCTGATGGAGATGAAAGTGAG Direct Gain 0 0.929739350797171 NA NA prediction 0.859478701594343 Functional Gain - TGS1 ENSG00000137574 CDS Human protein_coding chr8:56702797 chr8:56702797 nonsynonymous SNV 0.007 0 21 hm7G_associated_SNPs_41007 0 0 1 0 2 TGS1 chr8:56702741 3'AG 56702741 Downstream 57bp 37726 chr8 56702797 56702797 1 + A G UCEC 56702797 + 56702777 56702817 41 ACAGACCACATGCCAGTGGTACTGATGGAGATGAAAGTGAG ACAGACCACATGCCAGTGGTGCTGATGGAGATGAAAGTGAG Direct Gain 0 0.929739350797171 NA NA prediction 0.859478701594343 Functional Gain - TGS1 ENSG00000137574 CDS Human protein_coding chr8:56702797 chr8:56702797 nonsynonymous SNV 0.007 0 21 hm7G_associated_SNPs_41007 0 0 1 0 2 TGS1 chr8:56702858 5'GT 56702858 Upstream 62bp 37727 chr3 100447602 100447602 1 + C G LUSC 100447602 + 100447582 100447622 41 TCAAGTCAGGTGAAATATCTCCGTCGAGAACTGATAGAACT TCAAGTCAGGTGAAATATCTGCGTCGAGAACTGATAGAACT Direct Gain 0 0.929733307679115 NA NA prediction 0.85946661535823 Functional Gain - TFG ENSG00000114354 CDS Human protein_coding chr3:100447602 chr3:100447602 synonymous SNV . 0 21 hm7G_associated_SNPs_41008 0 0 1 0 1 TFG chr3:100447556 3'AG 100447556 Downstream 47bp 37728 chr6 35716341 35716341 1 + C G BLCA 35716341 + 35716321 35716361 41 TCCAACTTCCTAAACCTGTTCCAGCCCACACAGTCAGGGAG TCCAACTTCCTAAACCTGTTGCAGCCCACACAGTCAGGGAG Direct Gain 0 0.929722295352196 NA NA prediction 0.859444590704392 Functional Gain - ARMC12 ENSG00000157343 CDS Human protein_coding chr6:35716341 chr6:35716341 nonsynonymous SNV 0.990 0 21 hm7G_associated_SNPs_41009 0 0 0 0 1 ARMC12 chr6:35716315 3'AG 35716315 Downstream 27bp 37729 chr4 166215609 166215609 1 + T G UCEC 166215609 + 166215589 166215629 41 GTGACAAACTTACCATTTCTTCAGAAGAGAAGGTAAGGATA GTGACAAACTTACCATTTCTGCAGAAGAGAAGGTAAGGATA Direct Gain 0 0.929721738837121 NA NA prediction 0.859443477674242 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166215609 chr4:166215609 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_41010 0 0 1 0 2 KLHL2 chr4:166215511 3'AG 166215511 Downstream 99bp 37730 chr4 166215609 166215609 1 + T G UCEC 166215609 + 166215589 166215629 41 GTGACAAACTTACCATTTCTTCAGAAGAGAAGGTAAGGATA GTGACAAACTTACCATTTCTGCAGAAGAGAAGGTAAGGATA Direct Gain 0 0.929721738837121 NA NA prediction 0.859443477674242 Functional Gain - KLHL2 ENSG00000109466 CDS Human protein_coding chr4:166215609 chr4:166215609 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_41010 0 0 1 0 2 KLHL2 chr4:166215620 5'GT 166215620 Upstream 12bp 37731 chr3 197680935 197680935 1 + C G LUSC 197680935 + 197680915 197680955 41 TCATCTGGGGAAAAGTAACTCGGGCCCATGGAAACAGTGGC TCATCTGGGGAAAAGTAACTGGGGCCCATGGAAACAGTGGC Direct Gain 0 0.92972126214717 NA NA prediction 0.85944252429434 Functional Gain - RPL35A ENSG00000182899 CDS Human protein_coding chr3:197680935 chr3:197680935 nonsynonymous SNV 0.913 2 21 hm7G_associated_SNPs_41011 0 0 1 0 2 RPL35A chr3:197680874 3'AG 197680874 Downstream 62bp 37732 chr3 197680935 197680935 1 + C G LUSC 197680935 + 197680915 197680955 41 TCATCTGGGGAAAAGTAACTCGGGCCCATGGAAACAGTGGC TCATCTGGGGAAAAGTAACTGGGGCCCATGGAAACAGTGGC Direct Gain 0 0.92972126214717 NA NA prediction 0.85944252429434 Functional Gain - RPL35A ENSG00000182899 CDS Human protein_coding chr3:197680935 chr3:197680935 nonsynonymous SNV 0.913 2 21 hm7G_associated_SNPs_41011 0 0 1 0 2 RPL35A chr3:197681018 5'GT 197681018 Upstream 84bp 37733 chr2 108872071 108872071 1 + A G rs17035911 108872071 + 108872051 108872091 41 CAAGGATTGCCTGGTGTCCTACTACCACTTTCACAGGATGG CAAGGATTGCCTGGTGTCCTGCTACCACTTTCACAGGATGG Direct Gain 0 0.929707078552843 NA NA prediction 0.859414157105686 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108872071 chr2:108872071 nonsynonymous SNV 0.000 3 21 hm7G_associated_SNPs_41012 0 0 0 0 2 SULT1C3 chr2:108872028 3'AG 108872028 Downstream 44bp 37734 chr2 108872071 108872071 1 + A G rs17035911 108872071 + 108872051 108872091 41 CAAGGATTGCCTGGTGTCCTACTACCACTTTCACAGGATGG CAAGGATTGCCTGGTGTCCTGCTACCACTTTCACAGGATGG Direct Gain 0 0.929707078552843 NA NA prediction 0.859414157105686 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108872071 chr2:108872071 nonsynonymous SNV 0.000 3 21 hm7G_associated_SNPs_41012 0 0 0 0 2 SULT1C3 chr2:108872154 5'GT 108872154 Upstream 84bp 37735 chr19 50982320 50982320 1 + C G BLCA 50982320 + 50982300 50982340 41 GAGGAGGAGCGGGGCCGACTCCGGGTGAGGTGGGGCCCTCA GAGGAGGAGCGGGGCCGACTGCGGGTGAGGTGGGGCCCTCA Direct Gain 0 0.929699192018999 NA NA prediction 0.859398384037997 Functional Gain - EMC10 ENSG00000161671 CDS Human protein_coding chr19:50982320 chr19:50982320 nonsynonymous SNV 0.985 0 21 hm7G_associated_SNPs_41013 0 0 0 0 1 EMC10 chr19:50982323 5'GT 50982323 Upstream 4bp 37736 chr11 65338117 65338117 1 + C G rs35971725 65338117 + 65338097 65338137 41 GCCCCCGACTGAGGCGGAGACGAAGGTGCTGCAGGCGCGAC GCCCCCGACTGAGGCGGAGAGGAAGGTGCTGCAGGCGCGAC Direct Gain 0 0.929676103825595 NA NA prediction 0.859352207651191 Functional Gain - SSSCA1 ENSG00000173465 CDS Human protein_coding chr11:65338117 chr11:65338117 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41014 0 0 1 0 1 SSSCA1 chr11:65338075 3'AG 65338075 Downstream 43bp 37737 chr1 32502560 32502560 1 + T G SKCM 32502560 + 32502540 32502580 41 ATTTCTAGAGCTGTCCTACTTGAATGGAGTACCTGAACCCT ATTTCTAGAGCTGTCCTACTGGAATGGAGTACCTGAACCCT Direct Gain 0 0.929631522288055 NA NA prediction 0.85926304457611 Functional Gain - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502560 chr1:32502560 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41016 0 0 1 0 2 KHDRBS1 chr1:32502511 3'AG 32502511 Downstream 50bp 37738 chr1 32502560 32502560 1 + T G SKCM 32502560 + 32502540 32502580 41 ATTTCTAGAGCTGTCCTACTTGAATGGAGTACCTGAACCCT ATTTCTAGAGCTGTCCTACTGGAATGGAGTACCTGAACCCT Direct Gain 0 0.929631522288055 NA NA prediction 0.85926304457611 Functional Gain - KHDRBS1 ENSG00000121774 CDS Human protein_coding chr1:32502560 chr1:32502560 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41016 0 0 1 0 2 KHDRBS1 chr1:32502644 5'GT 32502644 Upstream 85bp 37739 chr22 50356473 50356473 1 + C G BLCA 50356473 + 50356453 50356493 41 TTCGAGCAGGACGAGGAGATCCTCCGAGGCCGCCTGCTCTT TTCGAGCAGGACGAGGAGATGCTCCGAGGCCGCCTGCTCTT Direct Gain 0 0.929626515519691 NA NA prediction 0.859253031039381 Functional Gain - PIM3 ENSG00000198355 CDS Human protein_coding chr22:50356473 chr22:50356473 nonsynonymous SNV 0.066 3 21 hm7G_associated_SNPs_41018 0 0 1 0 1 PIM3 chr22:50356513 5'GT 50356513 Upstream 41bp 37740 chr16 23700048 23700048 1 + T G LUAD 23700048 + 23700028 23700068 41 TCAGCAAGTGGGTGGACTATTCGGACAAGTACGGCCTTGGT TCAGCAAGTGGGTGGACTATGCGGACAAGTACGGCCTTGGT Direct Gain 0 0.929610764069606 NA NA prediction 0.859221528139211 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700048 chr16:23700048 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41020 0 0 1 0 2 PLK1 chr16:23699989 3'AG 23699989 Downstream 60bp 37741 chr16 23700048 23700048 1 + T G LUAD 23700048 + 23700028 23700068 41 TCAGCAAGTGGGTGGACTATTCGGACAAGTACGGCCTTGGT TCAGCAAGTGGGTGGACTATGCGGACAAGTACGGCCTTGGT Direct Gain 0 0.929610764069606 NA NA prediction 0.859221528139211 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700048 chr16:23700048 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41020 0 0 1 0 2 PLK1 chr16:23700066 5'GT 23700066 Upstream 19bp 37742 chr5 41911231 41911231 1 + C G HNSC 41911231 + 41911211 41911251 41 TGTATATGTATTGTCATTCTCTTACCAAAAGAAGAGAGTGG TGTATATGTATTGTCATTCTGTTACCAAAAGAAGAGAGTGG Direct Gain 0 0.929593861155162 NA NA prediction 0.859187722310325 Functional Gain - C5orf51 ENSG00000205765 CDS Human protein_coding chr5:41911231 chr5:41911231 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41021 0 0 1 0 2 C5orf51 chr5:41911150 3'AG 41911150 Downstream 82bp 37743 chr5 41911231 41911231 1 + C G HNSC 41911231 + 41911211 41911251 41 TGTATATGTATTGTCATTCTCTTACCAAAAGAAGAGAGTGG TGTATATGTATTGTCATTCTGTTACCAAAAGAAGAGAGTGG Direct Gain 0 0.929593861155162 NA NA prediction 0.859187722310325 Functional Gain - C5orf51 ENSG00000205765 CDS Human protein_coding chr5:41911231 chr5:41911231 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41021 0 0 1 0 2 C5orf51 chr5:41911281 5'GT 41911281 Upstream 51bp 37744 chr15 40457305 40457305 1 + A G LIHC 40457305 + 40457285 40457325 41 GAACTGAGTAAAGAAAATGTACAACCTTTAAGGCAAGGGCG GAACTGAGTAAAGAAAATGTGCAACCTTTAAGGCAAGGGCG Direct Gain 0 0.929539687760785 NA NA prediction 0.85907937552157 Functional Gain - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40457305 chr15:40457305 synonymous SNV . 0 21 hm7G_associated_SNPs_41025 0 0 1 0 2 BUB1B chr15:40457254 3'AG 40457254 Downstream 52bp 37745 chr15 40457305 40457305 1 + A G LIHC 40457305 + 40457285 40457325 41 GAACTGAGTAAAGAAAATGTACAACCTTTAAGGCAAGGGCG GAACTGAGTAAAGAAAATGTGCAACCTTTAAGGCAAGGGCG Direct Gain 0 0.929539687760785 NA NA prediction 0.85907937552157 Functional Gain - BUB1B ENSG00000156970 CDS Human protein_coding chr15:40457305 chr15:40457305 synonymous SNV . 0 21 hm7G_associated_SNPs_41025 0 0 1 0 2 BUB1B chr15:40457397 5'GT 40457397 Upstream 93bp 37746 chr21 30409640 30409640 1 + A G STAD 30409640 + 30409620 30409660 41 GAACTTGAAAATAAAAAATTAGAAAAAGAGAGTAAGAATGA GAACTTGAAAATAAAAAATTGGAAAAAGAGAGTAAGAATGA Direct Gain 0 0.92953881772913 NA NA prediction 0.859077635458261 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30409640 chr21:30409640 synonymous SNV . 0 21 hm7G_associated_SNPs_41026 0 0 1 0 2 USP16 chr21:30409597 3'AG 30409597 Downstream 44bp 37747 chr21 30409640 30409640 1 + A G STAD 30409640 + 30409620 30409660 41 GAACTTGAAAATAAAAAATTAGAAAAAGAGAGTAAGAATGA GAACTTGAAAATAAAAAATTGGAAAAAGAGAGTAAGAATGA Direct Gain 0 0.92953881772913 NA NA prediction 0.859077635458261 Functional Gain - USP16 ENSG00000156256 CDS Human protein_coding chr21:30409640 chr21:30409640 synonymous SNV . 0 21 hm7G_associated_SNPs_41026 0 0 1 0 2 USP16 chr21:30409600 3'AG 30409600 Downstream 41bp 37748 chr1 163044203 163044203 1 + C G HNSC 163044203 + 163044183 163044223 41 GAGGCCCAGAAGAAGATTTTCAACCTGATGGAGAAGGATTC GAGGCCCAGAAGAAGATTTTGAACCTGATGGAGAAGGATTC Direct Gain 0 0.929531477215613 NA NA prediction 0.859062954431227 Functional Gain - RGS4 ENSG00000117152 CDS Human protein_coding chr1:163044203 chr1:163044203 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_41027 0 0 0 1 1 RGS4 chr1:163044111 3'AG 163044111 Downstream 93bp 37749 chr10 90429652 90429652 1 + A G rs814628 90429652 + 90429632 90429672 41 TCGACTTCATTGTAAAGAAAACTGGACAGAAGCAGCTACAC TCGACTTCATTGTAAAGAAAGCTGGACAGAAGCAGCTACAC Direct Gain 0 0.929513705172484 NA NA prediction 0.859027410344967 Functional Gain - LIPF ENSG00000182333 CDS Human protein_coding chr10:90429652 chr10:90429652 nonsynonymous SNV 0.942 4 21 hm7G_associated_SNPs_41029 0 0 0 0 2 LIPF chr10:90429594 3'AG 90429594 Downstream 59bp 37750 chr10 90429652 90429652 1 + A G rs814628 90429652 + 90429632 90429672 41 TCGACTTCATTGTAAAGAAAACTGGACAGAAGCAGCTACAC TCGACTTCATTGTAAAGAAAGCTGGACAGAAGCAGCTACAC Direct Gain 0 0.929513705172484 NA NA prediction 0.859027410344967 Functional Gain - LIPF ENSG00000182333 CDS Human protein_coding chr10:90429652 chr10:90429652 nonsynonymous SNV 0.942 4 21 hm7G_associated_SNPs_41029 0 0 0 0 2 LIPF chr10:90429703 5'GT 90429703 Upstream 52bp 37751 chr1 168153206 168153206 1 + C G STAD 168153206 + 168153186 168153226 41 GGAGACAACGTTTTAAGAATCCAGCATGGGTCTGGCTTTGG GGAGACAACGTTTTAAGAATGCAGCATGGGTCTGGCTTTGG Direct Gain 0 0.929503157501709 NA NA prediction 0.859006315003419 Functional Gain - TIPRL ENSG00000143155 CDS Human protein_coding chr1:168153206 chr1:168153206 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41030 0 0 1 0 1 TIPRL chr1:168153140 3'AG 168153140 Downstream 67bp 37752 chr4 128725170 128725170 1 + C G STAD 128725170 + 128725150 128725190 41 TTCTATTTTCTCACAGGGCTCAATTTGAACAACTGTGTGCT TTCTATTTTCTCACAGGGCTGAATTTGAACAACTGTGTGCT Direct Gain 0 0.929445013382657 NA NA prediction 0.858890026765315 Functional Gain - HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128725170 chr4:128725170 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41033 0 0 0 0 2 HSPA4L chr4:128725166 3'AG 128725166 Downstream 5bp 37753 chr4 128725170 128725170 1 + C G STAD 128725170 + 128725150 128725190 41 TTCTATTTTCTCACAGGGCTCAATTTGAACAACTGTGTGCT TTCTATTTTCTCACAGGGCTGAATTTGAACAACTGTGTGCT Direct Gain 0 0.929445013382657 NA NA prediction 0.858890026765315 Functional Gain - HSPA4L ENSG00000164070 CDS Human protein_coding chr4:128725170 chr4:128725170 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41033 0 0 0 0 2 HSPA4L chr4:128725242 5'GT 128725242 Upstream 73bp 37754 chr12 58177060 58177060 1 + C G BLCA 58177060 + 58177040 58177080 41 GAGACTTGTGGCGGGGACCTCAAACAGGTGTGTGTGTGGAG GAGACTTGTGGCGGGGACCTGAAACAGGTGTGTGTGTGGAG Direct Gain 0 0.9294081273332 NA NA prediction 0.8588162546664 Functional Gain - TSFM ENSG00000123297;ENSG00000257921 CDS Human other chr12:58177060 chr12:58177060 nonsynonymous SNV 0.936 0 21 hm7G_associated_SNPs_41034 0 0 1 0 1 TSFM chr12:58177066 5'GT 58177066 Upstream 7bp 37755 chr1 84864347 84864347 1 + A G UCEC 84864347 + 84864327 84864367 41 CAGCAACAATTTCATGCAGAAATGAAGAAGGGAAAGCTGTG CAGCAACAATTTCATGCAGAGATGAAGAAGGGAAAGCTGTG Direct Gain 0 0.92940569522804 NA NA prediction 0.858811390456079 Functional Gain - DNASE2B ENSG00000137976 CDS Human protein_coding chr1:84864347 chr1:84864347 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_41035 0 0 0 0 1 DNASE2B chr1:84864372 5'GT 84864372 Upstream 26bp 37756 chr6 111213609 111213609 1 + A G KIRC 111213609 + 111213589 111213629 41 AGCAGTTATGGACCAGTTCTACATGAAAGATGGTGTTACTG AGCAGTTATGGACCAGTTCTGCATGAAAGATGGTGTTACTG Direct Gain 0 0.929383159447289 NA NA prediction 0.858766318894578 Functional Gain - AMD1 ENSG00000123505 CDS Human protein_coding chr6:111213609 chr6:111213609 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41038 0 0 1 0 1 AMD1 chr6:111213646 5'GT 111213646 Upstream 38bp 37757 chr1 173743491 173743491 1 + C G UCS 173743491 + 173743471 173743511 41 TCGGGTAGCTTCTATGAGTACCAGAAGACTAGGTGTGGCTG TCGGGTAGCTTCTATGAGTAGCAGAAGACTAGGTGTGGCTG Direct Gain 0 0.929377119410117 NA NA prediction 0.858754238820234 Functional Gain - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173743491 chr1:173743491 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_41040 0 0 1 0 2 KLHL20 chr1:173743444 3'AG 173743444 Downstream 48bp 37758 chr1 173743491 173743491 1 + C G UCS 173743491 + 173743471 173743511 41 TCGGGTAGCTTCTATGAGTACCAGAAGACTAGGTGTGGCTG TCGGGTAGCTTCTATGAGTAGCAGAAGACTAGGTGTGGCTG Direct Gain 0 0.929377119410117 NA NA prediction 0.858754238820234 Functional Gain - KLHL20 ENSG00000076321 CDS Human protein_coding chr1:173743491 chr1:173743491 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_41040 0 0 1 0 2 KLHL20 chr1:173743577 5'GT 173743577 Upstream 87bp 37759 chr1 163309231 163309231 1 + A G LUAD 163309231 + 163309211 163309251 41 TCAGATGGAATTCAGGAGCTACAACAATCACTAAATCAGGA TCAGATGGAATTCAGGAGCTGCAACAATCACTAAATCAGGA Direct Gain 0 0.929359358322871 NA NA prediction 0.858718716645741 Functional Gain - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163309231 chr1:163309231 synonymous SNV . 0 21 hm7G_associated_SNPs_41042 0 0 1 0 2 NUF2 chr1:163309171 3'AG 163309171 Downstream 61bp 37760 chr1 163309231 163309231 1 + A G LUAD 163309231 + 163309211 163309251 41 TCAGATGGAATTCAGGAGCTACAACAATCACTAAATCAGGA TCAGATGGAATTCAGGAGCTGCAACAATCACTAAATCAGGA Direct Gain 0 0.929359358322871 NA NA prediction 0.858718716645741 Functional Gain - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163309231 chr1:163309231 synonymous SNV . 0 21 hm7G_associated_SNPs_41042 0 0 1 0 2 NUF2 chr1:163309267 5'GT 163309267 Upstream 37bp 37761 chr1 153735821 153735821 1 + C G CESC 153735821 + 153735801 153735841 41 TCCCTGAGGGACAAAGTACTCCAGCTACAGAAGGGGAGGTG TCCCTGAGGGACAAAGTACTGCAGCTACAGAAGGGGAGGTG Direct Gain 0 0.929330091341216 NA NA prediction 0.858660182682431 Functional Gain - INTS3 ENSG00000143624 CDS Human protein_coding chr1:153735821 chr1:153735821 synonymous SNV . 0 21 hm7G_associated_SNPs_41044 0 0 1 0 1 INTS3 chr1:153735838 5'GT 153735838 Upstream 18bp 37762 chr11 66384488 66384488 1 + C G BLCA 66384488 + 66384468 66384508 41 CAGGAACTGCGCAGCCTCTTCGAGCGCCGCGGACGCGTCAT CAGGAACTGCGCAGCCTCTTGGAGCGCCGCGGACGCGTCAT Direct Gain 0 0.929234882780654 NA NA prediction 0.858469765561308 Functional Gain - RBM14;RBM14-RBM4 ENSG00000173933;ENSG00000239306;ENSG00000248643 CDS Human other chr11:66384488 chr11:66384488 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41051 0 0 1 0 1 RBM14;RBM14-RBM4 chr11:66384528 5'GT 66384528 Upstream 41bp 37763 chr7 5642993 5642993 1 + A G SKCM 5642993 + 5642973 5643013 41 CTTCCGTACCCACACGGGCAAGTACTGGACGCTGACGGCCA CTTCCGTACCCACACGGGCAGGTACTGGACGCTGACGGCCA Direct Gain 0 0.929157574441081 NA NA prediction 0.858315148882162 Functional Gain - FSCN1 ENSG00000075618 CDS Human protein_coding chr7:5642993 chr7:5642993 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41052 0 0 1 0 1 FSCN1 chr7:5643044 5'GT 5643044 Upstream 52bp 37764 chr10 95266787 95266787 1 + C G BLCA 95266787 + 95266767 95266807 41 ACTCATCAATAAATAATATTCATGAAATGGAAATACAGCTG ACTCATCAATAAATAATATTGATGAAATGGAAATACAGCTG Direct Gain 0 0.929131085208673 NA NA prediction 0.858262170417347 Functional Gain - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95266787 chr10:95266787 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_41055 0 0 1 0 2 CEP55 chr10:95266745 3'AG 95266745 Downstream 43bp 37765 chr10 95266787 95266787 1 + C G BLCA 95266787 + 95266767 95266807 41 ACTCATCAATAAATAATATTCATGAAATGGAAATACAGCTG ACTCATCAATAAATAATATTGATGAAATGGAAATACAGCTG Direct Gain 0 0.929131085208673 NA NA prediction 0.858262170417347 Functional Gain - CEP55 ENSG00000138180 CDS Human protein_coding chr10:95266787 chr10:95266787 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_41055 0 0 1 0 2 CEP55 chr10:95266813 5'GT 95266813 Upstream 27bp 37766 chr8 67428140 67428140 1 + C G CESC 67428140 + 67428120 67428160 41 TTCTTTAGATCCAGACATCTCAAGAAGATGACTGAAGAGTA TTCTTTAGATCCAGACATCTGAAGAAGATGACTGAAGAGTA Direct Gain 0 0.929112074125778 NA NA prediction 0.858224148251556 Functional Gain - C8orf46 ENSG00000169085 CDS Human protein_coding chr8:67428140 chr8:67428140 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41057 0 0 0 0 1 C8orf46 chr8:67428128 3'AG 67428128 Downstream 13bp 37767 chr3 190936734 190936734 1 + C G LUSC 190936734 + 190936714 190936754 41 TCTCAGCTGGCTCTGTAGATCACAAAGGTAAACAGAGGTAA TCTCAGCTGGCTCTGTAGATGACAAAGGTAAACAGAGGTAA Direct Gain 0 0.929085418554046 NA NA prediction 0.858170837108092 Functional Gain - OSTN ENSG00000188729 CDS Human protein_coding chr3:190936734 chr3:190936734 nonsynonymous SNV 0.978 0 21 hm7G_associated_SNPs_41058 0 0 0 0 1 OSTN chr3:190936750 5'GT 190936750 Upstream 17bp 37768 chr12 113348965 113348965 1 + A G COAD 113348965 + 113348945 113348985 41 TCCACCTGCTTCACAGAACTACAGAGAGACTTCCTGAAGCA TCCACCTGCTTCACAGAACTGCAGAGAGACTTCCTGAAGCA Direct Gain 0 0.929081082685906 NA NA prediction 0.858162165371813 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113348965 chr12:113348965 synonymous SNV . 0 21 hm7G_associated_SNPs_41059 0 0 0 0 2 OAS1 chr12:113348903 3'AG 113348903 Downstream 63bp 37769 chr12 113348965 113348965 1 + A G COAD 113348965 + 113348945 113348985 41 TCCACCTGCTTCACAGAACTACAGAGAGACTTCCTGAAGCA TCCACCTGCTTCACAGAACTGCAGAGAGACTTCCTGAAGCA Direct Gain 0 0.929081082685906 NA NA prediction 0.858162165371813 Functional Gain - OAS1 ENSG00000089127 CDS Human protein_coding chr12:113348965 chr12:113348965 synonymous SNV . 0 21 hm7G_associated_SNPs_41059 0 0 0 0 2 OAS1 chr12:113349040 5'GT 113349040 Upstream 76bp 37770 chr4 49005760 49005760 1 + T G LUAD 49005760 + 49005740 49005780 41 TCTCACAAACAGGAACAGCTTCAGCTGCGGGGCTCCTTTAC TCTCACAAACAGGAACAGCTGCAGCTGCGGGGCTCCTTTAC Direct Gain 0 0.929065524691521 NA NA prediction 0.858131049383041 Functional Gain - CWH43 ENSG00000109182 CDS Human protein_coding chr4:49005760 chr4:49005760 nonsynonymous SNV 0.017 0 21 hm7G_associated_SNPs_41061 0 0 0 0 1 CWH43 chr4:49005752 3'AG 49005752 Downstream 9bp 37771 chr17 2576020 2576020 1 + A G LGG 2576020 + 2576000 2576040 41 TAGTGTCTGCCTCAAGGGATAAAACTATAAAAATGTGGGAA TAGTGTCTGCCTCAAGGGATGAAACTATAAAAATGTGGGAA Direct Gain 0 0.929050567905595 NA NA prediction 0.858101135811189 Functional Gain - PAFAH1B1 ENSG00000007168 CDS Human protein_coding chr17:2576020 chr17:2576020 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41062 0 0 1 0 2 PAFAH1B1 chr17:2575949 3'AG 2575949 Downstream 72bp 37772 chr17 2576020 2576020 1 + A G LGG 2576020 + 2576000 2576040 41 TAGTGTCTGCCTCAAGGGATAAAACTATAAAAATGTGGGAA TAGTGTCTGCCTCAAGGGATGAAACTATAAAAATGTGGGAA Direct Gain 0 0.929050567905595 NA NA prediction 0.858101135811189 Functional Gain - PAFAH1B1 ENSG00000007168 CDS Human protein_coding chr17:2576020 chr17:2576020 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41062 0 0 1 0 2 PAFAH1B1 chr17:2576051 5'GT 2576051 Upstream 32bp 37773 chr1 242016693 242016693 1 + A G SKCM 242016693 + 242016673 242016713 41 AATCTTCTTAAGGGAAAGCAACTTCTTCGTGAGGGGAAAGT AATCTTCTTAAGGGAAAGCAGCTTCTTCGTGAGGGGAAAGT Direct Gain 0 0.929033775217557 NA NA prediction 0.858067550435115 Functional Gain - EXO1 ENSG00000174371 CDS Human protein_coding chr1:242016693 chr1:242016693 synonymous SNV . 0 21 hm7G_associated_SNPs_41064 0 0 1 0 2 EXO1 chr1:242016660 3'AG 242016660 Downstream 34bp 37774 chr1 242016693 242016693 1 + A G SKCM 242016693 + 242016673 242016713 41 AATCTTCTTAAGGGAAAGCAACTTCTTCGTGAGGGGAAAGT AATCTTCTTAAGGGAAAGCAGCTTCTTCGTGAGGGGAAAGT Direct Gain 0 0.929033775217557 NA NA prediction 0.858067550435115 Functional Gain - EXO1 ENSG00000174371 CDS Human protein_coding chr1:242016693 chr1:242016693 synonymous SNV . 0 21 hm7G_associated_SNPs_41064 0 0 1 0 2 EXO1 chr1:242016783 5'GT 242016783 Upstream 91bp 37775 chr19 804341 804341 1 + A G LIHC 804341 + 804321 804361 41 TGCCAACACCATGGTGAACTACTACACCTCGGTGACCCCTG TGCCAACACCATGGTGAACTGCTACACCTCGGTGACCCCTG Direct Gain 0 0.929003774116118 NA NA prediction 0.858007548232236 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804341 chr19:804341 nonsynonymous SNV 0.534 3 21 hm7G_associated_SNPs_41066 0 0 1 1 2 PTBP1 chr19:804292 3'AG 804292 Downstream 50bp 37776 chr19 804341 804341 1 + A G LIHC 804341 + 804321 804361 41 TGCCAACACCATGGTGAACTACTACACCTCGGTGACCCCTG TGCCAACACCATGGTGAACTGCTACACCTCGGTGACCCCTG Direct Gain 0 0.929003774116118 NA NA prediction 0.858007548232236 Functional Gain - PTBP1 ENSG00000011304 CDS Human protein_coding chr19:804341 chr19:804341 nonsynonymous SNV 0.534 3 21 hm7G_associated_SNPs_41066 0 0 1 1 2 PTBP1 chr19:804438 5'GT 804438 Upstream 98bp 37777 chr1 169099251 169099251 1 + C G LUSC 169099251 + 169099231 169099271 41 ATGGGTTTTATTTTTAGCCTCCCAAGAATGAGTCCTTGGAG ATGGGTTTTATTTTTAGCCTGCCAAGAATGAGTCCTTGGAG Direct Gain 0 0.928925152642208 NA NA prediction 0.857850305284416 Functional Gain - ATP1B1 ENSG00000143153 CDS Human protein_coding chr1:169099251 chr1:169099251 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41069 0 0 1 0 2 ATP1B1 chr1:169099248 3'AG 169099248 Downstream 4bp 37778 chr1 169099251 169099251 1 + C G LUSC 169099251 + 169099231 169099271 41 ATGGGTTTTATTTTTAGCCTCCCAAGAATGAGTCCTTGGAG ATGGGTTTTATTTTTAGCCTGCCAAGAATGAGTCCTTGGAG Direct Gain 0 0.928925152642208 NA NA prediction 0.857850305284416 Functional Gain - ATP1B1 ENSG00000143153 CDS Human protein_coding chr1:169099251 chr1:169099251 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41069 0 0 1 0 2 ATP1B1 chr1:169099328 5'GT 169099328 Upstream 78bp 37779 chr3 129251135 129251135 1 + A G UCEC 129251135 + 129251115 129251155 41 GTGCTCGTGTGGAATCGACTACTACACGCTCAAGCCGGAGG GTGCTCGTGTGGAATCGACTGCTACACGCTCAAGCCGGAGG Direct Gain 0 0.928850408083536 NA NA prediction 0.857700816167073 Functional Gain - RHO ENSG00000163914 CDS Human protein_coding chr3:129251135 chr3:129251135 nonsynonymous SNV 0.968 4 21 hm7G_associated_SNPs_41073 0 0 0 0 1 RHO chr3:129251094 3'AG 129251094 Downstream 42bp 37780 chr3 190127770 190127770 1 + A G UCEC 190127770 + 190127750 190127790 41 TGTTTCCATGGCCAAGTCATACTCAGCCCCTCGCACAGAGA TGTTTCCATGGCCAAGTCATGCTCAGCCCCTCGCACAGAGA Direct Gain 0 0.928846402090438 NA NA prediction 0.857692804180877 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190127770 chr3:190127770 nonsynonymous SNV 0.223 3 21 hm7G_associated_SNPs_41074 0 0 0 0 1 CLDN16 chr3:190127692 3'AG 190127692 Downstream 79bp 37781 chr1 236850036 236850036 1 + C G BLCA 236850036 + 236850016 236850056 41 GACGAGGATGAGTACATGATCCAGGAGGAGGAGTGGGACCG GACGAGGATGAGTACATGATGCAGGAGGAGGAGTGGGACCG Direct Gain 0 0.928824092772812 NA NA prediction 0.857648185545623 Functional Gain - ACTN2 ENSG00000077522 CDS Human protein_coding chr1:236850036 chr1:236850036 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41076 0 0 1 0 1 ACTN2 chr1:236850099 5'GT 236850099 Upstream 64bp 37782 chr13 53236822 53236822 1 + C G CESC 53236822 + 53236802 53236842 41 GTGTCTGGATTAAAAGGTGTCAAGAAGCTCAGAATGGTATG GTGTCTGGATTAAAAGGTGTGAAGAAGCTCAGAATGGTATG Direct Gain 0 0.928789861133971 NA NA prediction 0.857579722267942 Functional Gain - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53236822 chr13:53236822 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41078 0 0 1 0 2 SUGT1 chr13:53236784 3'AG 53236784 Downstream 39bp 37783 chr13 53236822 53236822 1 + C G CESC 53236822 + 53236802 53236842 41 GTGTCTGGATTAAAAGGTGTCAAGAAGCTCAGAATGGTATG GTGTCTGGATTAAAAGGTGTGAAGAAGCTCAGAATGGTATG Direct Gain 0 0.928789861133971 NA NA prediction 0.857579722267942 Functional Gain - SUGT1 ENSG00000165416 CDS Human protein_coding chr13:53236822 chr13:53236822 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41078 0 0 1 0 2 SUGT1 chr13:53236837 5'GT 53236837 Upstream 16bp 37784 chr3 108549554 108549554 1 + A G COAD 108549554 + 108549534 108549574 41 TTTTTCCTCTGGGGACTTCTAGCATTGTTGGGCTTGGCTTT TTTTTCCTCTGGGGACTTCTGGCATTGTTGGGCTTGGCTTT Direct Gain 0 0.928786949319136 NA NA prediction 0.857573898638272 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108549554 chr3:108549554 synonymous SNV . 0 21 hm7G_associated_SNPs_41079 0 0 0 0 2 TRAT1 chr3:108549517 3'AG 108549517 Downstream 38bp 37785 chr3 108549554 108549554 1 + A G COAD 108549554 + 108549534 108549574 41 TTTTTCCTCTGGGGACTTCTAGCATTGTTGGGCTTGGCTTT TTTTTCCTCTGGGGACTTCTGGCATTGTTGGGCTTGGCTTT Direct Gain 0 0.928786949319136 NA NA prediction 0.857573898638272 Functional Gain - TRAT1 ENSG00000163519 CDS Human protein_coding chr3:108549554 chr3:108549554 synonymous SNV . 0 21 hm7G_associated_SNPs_41079 0 0 0 0 2 TRAT1 chr3:108549627 5'GT 108549627 Upstream 74bp 37786 chr2 178081428 178081428 1 + T G UCEC 178081428 + 178081408 178081448 41 TGGAGGTGGATCTGGCAATTTTATGGGTCGCGGAGGGAACT TGGAGGTGGATCTGGCAATTGTATGGGTCGCGGAGGGAACT Direct Gain 0 0.928780723579285 NA NA prediction 0.85756144715857 Functional Gain - HNRNPA3 ENSG00000170144 CDS Human protein_coding chr2:178081428 chr2:178081428 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41080 0 0 1 0 1 HNRNPA3 chr2:178081499 5'GT 178081499 Upstream 72bp 37787 chr1 42922936 42922936 1 + A G UCEC 42922936 + 42922916 42922956 41 AGGCCCTTCTGCGATGTTTTACCTGGCTGCGGCTGTGTCAG AGGCCCTTCTGCGATGTTTTGCCTGGCTGCGGCTGTGTCAG Direct Gain 0 0.928779368206489 NA NA prediction 0.857558736412977 Functional Gain - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922936 chr1:42922936 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41081 0 0 1 0 2 PPCS chr1:42922918 3'AG 42922918 Downstream 19bp 37788 chr1 42922936 42922936 1 + A G UCEC 42922936 + 42922916 42922956 41 AGGCCCTTCTGCGATGTTTTACCTGGCTGCGGCTGTGTCAG AGGCCCTTCTGCGATGTTTTGCCTGGCTGCGGCTGTGTCAG Direct Gain 0 0.928779368206489 NA NA prediction 0.857558736412977 Functional Gain - PPCS ENSG00000127125 CDS Human protein_coding chr1:42922936 chr1:42922936 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41081 0 0 1 0 2 PPCS chr1:42923021 5'GT 42923021 Upstream 86bp 37789 chr20 31656683 31656683 1 + C G CESC 31656683 + 31656663 31656703 41 GAAGCTCCCACGGTCACACTCCACAACAAGAAGGCCTTGGT GAAGCTCCCACGGTCACACTGCACAACAAGAAGGCCTTGGT Direct Gain 0 0.928764237340945 NA NA prediction 0.857528474681889 Functional Gain - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31656683 chr20:31656683 synonymous SNV . 0 21 hm7G_associated_SNPs_41083 0 0 0 0 2 BPIFB3 chr20:31656609 3'AG 31656609 Downstream 75bp 37790 chr20 31656683 31656683 1 + C G CESC 31656683 + 31656663 31656703 41 GAAGCTCCCACGGTCACACTCCACAACAAGAAGGCCTTGGT GAAGCTCCCACGGTCACACTGCACAACAAGAAGGCCTTGGT Direct Gain 0 0.928764237340945 NA NA prediction 0.857528474681889 Functional Gain - BPIFB3 ENSG00000186190 CDS Human protein_coding chr20:31656683 chr20:31656683 synonymous SNV . 0 21 hm7G_associated_SNPs_41083 0 0 0 0 2 BPIFB3 chr20:31656779 5'GT 31656779 Upstream 97bp 37791 chr3 9406949 9406949 1 + T G UCEC 9406949 + 9406929 9406969 41 ACTTGGGTCATCATGCAAAATCAGCAGAGACCGTGGCAAGA ACTTGGGTCATCATGCAAAAGCAGCAGAGACCGTGGCAAGA Direct Gain 0 0.928757946629781 NA NA prediction 0.857515893259562 Functional Gain - THUMPD3 ENSG00000134077 CDS Human protein_coding chr3:9406949 chr3:9406949 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41084 0 0 1 0 1 THUMPD3 chr3:9407004 5'GT 9407004 Upstream 56bp 37792 chr13 41639388 41639388 1 + A G UCEC 41639388 + 41639368 41639408 41 GGCAGCTGCCCTGAAAGCATACCAAGAGGATTTGAAAAGAC GGCAGCTGCCCTGAAAGCATGCCAAGAGGATTTGAAAAGAC Direct Gain 0 0.928688469369693 NA NA prediction 0.857376938739386 Functional Gain - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41639388 chr13:41639388 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41087 0 0 1 0 2 WBP4 chr13:41639300 3'AG 41639300 Downstream 89bp 37793 chr13 41639388 41639388 1 + A G UCEC 41639388 + 41639368 41639408 41 GGCAGCTGCCCTGAAAGCATACCAAGAGGATTTGAAAAGAC GGCAGCTGCCCTGAAAGCATGCCAAGAGGATTTGAAAAGAC Direct Gain 0 0.928688469369693 NA NA prediction 0.857376938739386 Functional Gain - WBP4 ENSG00000120688 CDS Human protein_coding chr13:41639388 chr13:41639388 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41087 0 0 1 0 2 WBP4 chr13:41639423 5'GT 41639423 Upstream 36bp 37794 chr14 54997639 54997639 1 + A G LIHC 54997639 + 54997619 54997659 41 AGTATTAAAAAGGATAGCAAAGAAGAAATATATTGCCAGTT AGTATTAAAAAGGATAGCAAGGAAGAAATATATTGCCAGTT Direct Gain 0 0.928633961337103 NA NA prediction 0.857267922674206 Functional Gain - CGRRF1 ENSG00000100532 CDS Human protein_coding chr14:54997639 chr14:54997639 synonymous SNV . 0 21 hm7G_associated_SNPs_41090 0 0 0 2 1 CGRRF1 chr14:54997621 3'AG 54997621 Downstream 19bp 37795 chr12 56495406 56495406 1 + A G UCEC 56495406 + 56495386 56495426 41 TGAAGATGAGGAGTATGAATACATGAACCGGAGGAGAAGGC TGAAGATGAGGAGTATGAATGCATGAACCGGAGGAGAAGGC Direct Gain 0 0.928619834618462 NA NA prediction 0.857239669236924 Functional Gain - ERBB3 ENSG00000065361 CDS Human protein_coding chr12:56495406 chr12:56495406 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41091 0 0 0 1 1 ERBB3 chr12:56495313 3'AG 56495313 Downstream 94bp 37796 chr11 22387161 22387161 1 + A G rs570403497 22387161 + 22387141 22387181 41 AAAGTCCTGCAAAGCATCCTACTATTACAGATGAAGAACGT AAAGTCCTGCAAAGCATCCTGCTATTACAGATGAAGAACGT Direct Gain 0 0.928616522261746 NA NA prediction 0.857233044523493 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22387161 chr11:22387161 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41093 0 0 0 0 2 SLC17A6 chr11:22387093 3'AG 22387093 Downstream 69bp 37797 chr11 22387161 22387161 1 + A G rs570403497 22387161 + 22387141 22387181 41 AAAGTCCTGCAAAGCATCCTACTATTACAGATGAAGAACGT AAAGTCCTGCAAAGCATCCTGCTATTACAGATGAAGAACGT Direct Gain 0 0.928616522261746 NA NA prediction 0.857233044523493 Functional Gain - SLC17A6 ENSG00000091664 CDS Human protein_coding chr11:22387161 chr11:22387161 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41093 0 0 0 0 2 SLC17A6 chr11:22387235 5'GT 22387235 Upstream 75bp 37798 chr1 209773349 209773349 1 + C G rs146389830 209773349 + 209773329 209773369 41 GGAGCTTTCTCAGAAGTTTTCCTGGTGAAGCAAAGACTGAC GGAGCTTTCTCAGAAGTTTTGCTGGTGAAGCAAAGACTGAC Direct Gain 0 0.92860436903275 NA NA prediction 0.8572087380655 Functional Gain - CAMK1G ENSG00000008118 CDS Human protein_coding chr1:209773349 chr1:209773349 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41094 0 0 0 0 1 CAMK1G chr1:209773328 3'AG 209773328 Downstream 22bp 37799 chr20 39979026 39979026 1 + C G LUSC 39979026 + 39979006 39979046 41 CGGGCAGCCAGAGAGGGTCTCCAGGGGGAAAGGTGAGTGAC CGGGCAGCCAGAGAGGGTCTGCAGGGGGAAAGGTGAGTGAC Direct Gain 0 0.928597927294262 NA NA prediction 0.857195854588524 Functional Gain - LPIN3 ENSG00000132793 CDS Human protein_coding chr20:39979026 chr20:39979026 nonsynonymous SNV 0.448 2 21 hm7G_associated_SNPs_41095 0 0 1 0 1 LPIN3 chr20:39979037 5'GT 39979037 Upstream 12bp 37800 chr8 73951437 73951437 1 + C G rs576511615 73951437 + 73951417 73951457 41 CGGTAACTCCTGAAAAACATCGAGCTAGAAAAAGACAGGTA CGGTAACTCCTGAAAAACATGGAGCTAGAAAAAGACAGGTA Direct Gain 0 0.928594164304943 NA NA prediction 0.857188328609886 Functional Gain - TERF1 ENSG00000147601 CDS Human protein_coding chr8:73951437 chr8:73951437 nonsynonymous SNV 0.006 0 21 hm7G_associated_SNPs_41096 0 0 0 0 2 TERF1 chr8:73951351 3'AG 73951351 Downstream 87bp 37801 chr8 73951437 73951437 1 + C G rs576511615 73951437 + 73951417 73951457 41 CGGTAACTCCTGAAAAACATCGAGCTAGAAAAAGACAGGTA CGGTAACTCCTGAAAAACATGGAGCTAGAAAAAGACAGGTA Direct Gain 0 0.928594164304943 NA NA prediction 0.857188328609886 Functional Gain - TERF1 ENSG00000147601 CDS Human protein_coding chr8:73951437 chr8:73951437 nonsynonymous SNV 0.006 0 21 hm7G_associated_SNPs_41096 0 0 0 0 2 TERF1 chr8:73951454 5'GT 73951454 Upstream 18bp 37802 chr10 43604557 43604557 1 + T G rs139813765 43604557 + 43604537 43604577 41 GCTGGTCAATGACTCAGACTTCCAGGGCCCAGGAGCGGGCG GCTGGTCAATGACTCAGACTGCCAGGGCCCAGGAGCGGGCG Direct Gain 0 0.928593324644483 NA NA prediction 0.857186649288965 Functional Gain - RET ENSG00000165731 CDS Human protein_coding chr10:43604557 chr10:43604557 nonsynonymous SNV 0.989 4 21 hm7G_associated_SNPs_41098 0 0 0 0 1 RET chr10:43604479 3'AG 43604479 Downstream 79bp 37803 chr2 88474907 88474907 1 + A G UCEC 88474907 + 88474887 88474927 41 ACGGTGCTGAAGCAGAACGTACATGTGTTTGGAGGTGTGTG ACGGTGCTGAAGCAGAACGTGCATGTGTTTGGAGGTGTGTG Direct Gain 0 0.928553017529331 NA NA prediction 0.857106035058662 Functional Gain - THNSL2 ENSG00000144115 CDS Human protein_coding chr2:88474907 chr2:88474907 synonymous SNV . 0 21 hm7G_associated_SNPs_41099 0 0 0 0 1 THNSL2 chr2:88474920 5'GT 88474920 Upstream 14bp 37804 chr16 74419299 74419299 1 + A G UCEC 74419299 + 74419279 74419319 41 CATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTC CATGATGGATCCACGGATGTGCAGCAGAGAGCCTGGAGGTC Direct Gain 0 0.928548538049032 NA NA prediction 0.857097076098064 Functional Gain - NPIPB15 ENSG00000196436 CDS Human protein_coding chr16:74419299 chr16:74419299 synonymous SNV . 0 21 hm7G_associated_SNPs_41100 0 0 0 0 2 NPIPB15 chr16:74419240 3'AG 74419240 Downstream 60bp 37805 chr16 74419299 74419299 1 + A G UCEC 74419299 + 74419279 74419319 41 CATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTC CATGATGGATCCACGGATGTGCAGCAGAGAGCCTGGAGGTC Direct Gain 0 0.928548538049032 NA NA prediction 0.857097076098064 Functional Gain - NPIPB15 ENSG00000196436 CDS Human protein_coding chr16:74419299 chr16:74419299 synonymous SNV . 0 21 hm7G_associated_SNPs_41100 0 0 0 0 2 NPIPB15 chr16:74419339 5'GT 74419339 Upstream 41bp 37806 chr2 101186138 101186138 1 + A G rs143524977 101186138 + 101186118 101186158 41 TTATGTTCAAGAAGTTACCAAAGCTGGCGAGGGCTTGTGGG TTATGTTCAAGAAGTTACCAGAGCTGGCGAGGGCTTGTGGG Direct Gain 0 0.928514450729969 NA NA prediction 0.857028901459938 Functional Gain - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101186138 chr2:101186138 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41102 0 0 0 0 1 PDCL3 chr2:101186040 3'AG 101186040 Downstream 99bp 37807 chr3 136699372 136699372 1 + C G LUAD 136699372 + 136699352 136699392 41 TCAACCAACATGAAGCATCTCTTGATGTGGAGCCCAGTGAT TCAACCAACATGAAGCATCTGTTGATGTGGAGCCCAGTGAT Direct Gain 0 0.928474842311483 NA NA prediction 0.856949684622965 Functional Gain - IL20RB ENSG00000174564 CDS Human protein_coding chr3:136699372 chr3:136699372 synonymous SNV . 0 21 hm7G_associated_SNPs_41103 0 0 1 1 1 IL20RB chr3:136699434 5'GT 136699434 Upstream 63bp 37808 chr17 61628172 61628172 1 + A G UCEC 61628172 + 61628152 61628192 41 CTTCGTGGAGGAGTACAACAACAAGGTGGGCCGGGCAGGGG CTTCGTGGAGGAGTACAACAGCAAGGTGGGCCGGGCAGGGG Direct Gain 0 0.928433644800494 NA NA prediction 0.856867289600988 Functional Gain - DCAF7 ENSG00000136485 CDS Human protein_coding chr17:61628172 chr17:61628172 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41105 0 0 1 0 1 DCAF7 chr17:61628176 5'GT 61628176 Upstream 5bp 37809 chr17 40003602 40003602 1 + A G UCEC 40003602 + 40003582 40003622 41 AATCAGTGGACAGTCATAGCACCCATGAGAAGCAGGAGGAG AATCAGTGGACAGTCATAGCGCCCATGAGAAGCAGGAGGAG Direct Gain 0 0.928422300022386 NA NA prediction 0.856844600044772 Functional Gain - KLHL10 ENSG00000161594 CDS Human protein_coding chr17:40003602 chr17:40003602 synonymous SNV . 0 21 hm7G_associated_SNPs_41106 0 0 0 0 2 KLHL10 chr17:40003513 3'AG 40003513 Downstream 90bp 37810 chr17 40003602 40003602 1 + A G UCEC 40003602 + 40003582 40003622 41 AATCAGTGGACAGTCATAGCACCCATGAGAAGCAGGAGGAG AATCAGTGGACAGTCATAGCGCCCATGAGAAGCAGGAGGAG Direct Gain 0 0.928422300022386 NA NA prediction 0.856844600044772 Functional Gain - KLHL10 ENSG00000161594 CDS Human protein_coding chr17:40003602 chr17:40003602 synonymous SNV . 0 21 hm7G_associated_SNPs_41106 0 0 0 0 2 KLHL10 chr17:40003662 5'GT 40003662 Upstream 61bp 37811 chrY 22918696 22918696 1 + T G LUSC 22918696 + 22918676 22918716 41 AAGAAGCACTTGAAGCGTGTTGCAGCGCCGAAGCATTGGAT AAGAAGCACTTGAAGCGTGTGGCAGCGCCGAAGCATTGGAT Direct Gain 0 0.928420966198739 NA NA prediction 0.856841932397478 Functional Gain - RPS4Y2 ENSG00000157828 CDS Human other chrY:22918696 chrY:22918696 synonymous SNV . 0 21 hm7G_associated_SNPs_41107 0 0 0 0 2 RPS4Y2 chrY:22918664 3'AG 22918664 Downstream 33bp 37812 chrY 22918696 22918696 1 + T G LUSC 22918696 + 22918676 22918716 41 AAGAAGCACTTGAAGCGTGTTGCAGCGCCGAAGCATTGGAT AAGAAGCACTTGAAGCGTGTGGCAGCGCCGAAGCATTGGAT Direct Gain 0 0.928420966198739 NA NA prediction 0.856841932397478 Functional Gain - RPS4Y2 ENSG00000157828 CDS Human other chrY:22918696 chrY:22918696 synonymous SNV . 0 21 hm7G_associated_SNPs_41107 0 0 0 0 2 RPS4Y2 chrY:22918741 5'GT 22918741 Upstream 46bp 37813 chr10 17747022 17747022 1 + A G STAD 17747022 + 17747002 17747042 41 AAAAGCTGGAAGATATTGATAGGTAAAAGAACATGGGTGCA AAAAGCTGGAAGATATTGATGGGTAAAAGAACATGGGTGCA Direct Gain 0 0.928369200491828 NA NA prediction 0.856738400983656 Functional Gain - STAM ENSG00000136738 CDS Human protein_coding chr10:17747022 chr10:17747022 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41108 0 0 1 0 2 STAM chr10:17746969 3'AG 17746969 Downstream 54bp 37814 chr10 17747022 17747022 1 + A G STAD 17747022 + 17747002 17747042 41 AAAAGCTGGAAGATATTGATAGGTAAAAGAACATGGGTGCA AAAAGCTGGAAGATATTGATGGGTAAAAGAACATGGGTGCA Direct Gain 0 0.928369200491828 NA NA prediction 0.856738400983656 Functional Gain - STAM ENSG00000136738 CDS Human protein_coding chr10:17747022 chr10:17747022 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41108 0 0 1 0 2 STAM chr10:17747023 5'GT 17747023 Upstream 2bp 37815 chr6 159103965 159103965 1 + A G BRCA 159103965 + 159103945 159103985 41 TCATTTTTTCAGGAATGTCAAAATAAAAACTGGAGAATGGT TCATTTTTTCAGGAATGTCAGAATAAAAACTGGAGAATGGT Direct Gain 0 0.928363752669955 NA NA prediction 0.85672750533991 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159103965 chr6:159103965 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41109 0 0 0 0 2 SYTL3 chr6:159103957 3'AG 159103957 Downstream 9bp 37816 chr6 159103965 159103965 1 + A G BRCA 159103965 + 159103945 159103985 41 TCATTTTTTCAGGAATGTCAAAATAAAAACTGGAGAATGGT TCATTTTTTCAGGAATGTCAGAATAAAAACTGGAGAATGGT Direct Gain 0 0.928363752669955 NA NA prediction 0.85672750533991 Functional Gain - SYTL3 ENSG00000164674 CDS Human protein_coding chr6:159103965 chr6:159103965 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41109 0 0 0 0 2 SYTL3 chr6:159104021 5'GT 159104021 Upstream 57bp 37817 chr3 129009527 129009527 1 + T G KIRC 129009527 + 129009507 129009547 41 CACATTTTCCCTCAGGTGCCTCTGGGAAAGGGAAGACGCTG CACATTTTCCCTCAGGTGCCGCTGGGAAAGGGAAGACGCTG Direct Gain 0 0.928353632352945 NA NA prediction 0.856707264705889 Functional Gain - HMCES ENSG00000183624 CDS Human protein_coding chr3:129009527 chr3:129009527 synonymous SNV . 0 21 hm7G_associated_SNPs_41110 0 0 0 0 1 HMCES chr3:129009522 3'AG 129009522 Downstream 6bp 37818 chr17 37358641 37358641 1 + C G CESC 37358641 + 37358621 37358661 41 TGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTG TGACGGTCCATTCCCGGGCTGGATGCCGGAAAAACACCTTG Direct Gain 0 0.928331000473184 NA NA prediction 0.856662000946368 Functional Gain - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358641 chr17:37358641 nonsynonymous SNV 0.988 2 21 hm7G_associated_SNPs_41111 0 0 1 0 2 RPL19 chr17:37358570 3'AG 37358570 Downstream 72bp 37819 chr17 37358641 37358641 1 + C G CESC 37358641 + 37358621 37358661 41 TGACGGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTG TGACGGTCCATTCCCGGGCTGGATGCCGGAAAAACACCTTG Direct Gain 0 0.928331000473184 NA NA prediction 0.856662000946368 Functional Gain - RPL19 ENSG00000108298 CDS Human protein_coding chr17:37358641 chr17:37358641 nonsynonymous SNV 0.988 2 21 hm7G_associated_SNPs_41111 0 0 1 0 2 RPL19 chr17:37358692 5'GT 37358692 Upstream 52bp 37820 chr7 105207629 105207629 1 + A G GBM 105207629 + 105207609 105207649 41 GCACTACTGCTGAAAGATGTACTGCAGTCAGCTTCAGGGCA GCACTACTGCTGAAAGATGTGCTGCAGTCAGCTTCAGGGCA Direct Gain 0 0.928320595802182 NA NA prediction 0.856641191604365 Functional Gain - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105207629 chr7:105207629 synonymous SNV . 0 21 hm7G_associated_SNPs_41113 0 0 1 0 1 RINT1 chr7:105207566 3'AG 105207566 Downstream 64bp 37821 chr1 231475531 231475531 1 + A G UCEC 231475531 + 231475511 231475551 41 CTAGGTGTGCTGGGATATGCAGCTATGAAGGGAAGGGTGGA CTAGGTGTGCTGGGATATGCGGCTATGAAGGGAAGGGTGGA Direct Gain 0 0.928308169744717 NA NA prediction 0.856616339489433 Functional Gain - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231475531 chr1:231475531 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_41114 0 0 1 0 2 SPRTN chr1:231475515 3'AG 231475515 Downstream 17bp 37822 chr1 231475531 231475531 1 + A G UCEC 231475531 + 231475511 231475551 41 CTAGGTGTGCTGGGATATGCAGCTATGAAGGGAAGGGTGGA CTAGGTGTGCTGGGATATGCGGCTATGAAGGGAAGGGTGGA Direct Gain 0 0.928308169744717 NA NA prediction 0.856616339489433 Functional Gain - SPRTN ENSG00000010072 CDS Human protein_coding chr1:231475531 chr1:231475531 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_41114 0 0 1 0 2 SPRTN chr1:231475614 5'GT 231475614 Upstream 84bp 37823 chr14 60977843 60977843 1 + T G rs45549246 60977843 + 60977823 60977863 41 ACAGGGTTCCGGGCGGGCACTACGGGCGGAGGGCGACGGCA ACAGGGTTCCGGGCGGGCACGACGGGCGGAGGGCGACGGCA Direct Gain 0 0.928259056153551 NA NA prediction 0.856518112307102 Functional Gain - SIX6 ENSG00000184302 CDS Human protein_coding chr14:60977843 chr14:60977843 nonsynonymous SNV 0.525 2 21 hm7G_associated_SNPs_41116 0 0 0 0 1 SIX6 chr14:60977802 3'AG 60977802 Downstream 42bp 37824 chr17 3397679 3397679 1 + A G SKCM 3397679 + 3397659 3397699 41 CCTGCGCCATTGAGGTCTATAAAATTATAGAGAAAGTTGAT CCTGCGCCATTGAGGTCTATGAAATTATAGAGAAAGTTGAT Direct Gain 0 0.92824142193842 NA NA prediction 0.856482843876841 Functional Gain - ASPA ENSG00000108381 CDS Human protein_coding chr17:3397679 chr17:3397679 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41118 0 0 0 0 2 ASPA chr17:3397644 3'AG 3397644 Downstream 36bp 37825 chr17 3397679 3397679 1 + A G SKCM 3397679 + 3397659 3397699 41 CCTGCGCCATTGAGGTCTATAAAATTATAGAGAAAGTTGAT CCTGCGCCATTGAGGTCTATGAAATTATAGAGAAAGTTGAT Direct Gain 0 0.92824142193842 NA NA prediction 0.856482843876841 Functional Gain - ASPA ENSG00000108381 CDS Human protein_coding chr17:3397679 chr17:3397679 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41118 0 0 0 0 2 ASPA chr17:3397753 5'GT 3397753 Upstream 75bp 37826 chr8 90798863 90798863 1 + C G OV 90798863 + 90798843 90798883 41 TCCATGAAAATAGTGGTTCTCCTGAAACTTCAAGGTCCCTG TCCATGAAAATAGTGGTTCTGCTGAAACTTCAAGGTCCCTG Direct Gain 0 0.928221501883361 NA NA prediction 0.856443003766722 Functional Gain - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90798863 chr8:90798863 nonsynonymous SNV 0.230 0 21 hm7G_associated_SNPs_41120 0 0 1 0 2 RIPK2 chr8:90798821 3'AG 90798821 Downstream 43bp 37827 chr8 90798863 90798863 1 + C G OV 90798863 + 90798843 90798883 41 TCCATGAAAATAGTGGTTCTCCTGAAACTTCAAGGTCCCTG TCCATGAAAATAGTGGTTCTGCTGAAACTTCAAGGTCCCTG Direct Gain 0 0.928221501883361 NA NA prediction 0.856443003766722 Functional Gain - RIPK2 ENSG00000104312 CDS Human protein_coding chr8:90798863 chr8:90798863 nonsynonymous SNV 0.230 0 21 hm7G_associated_SNPs_41120 0 0 1 0 2 RIPK2 chr8:90798914 5'GT 90798914 Upstream 52bp 37828 chr15 27128320 27128320 1 + C G LUAD 27128320 + 27128300 27128340 41 GTCTGTCTTTCAGAGCGCATCACTCAGGTGAGGACCGACAT GTCTGTCTTTCAGAGCGCATGACTCAGGTGAGGACCGACAT Direct Gain 0 0.928214402417448 NA NA prediction 0.856428804834896 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128320 chr15:27128320 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41121 0 0 0 0 2 GABRA5 chr15:27128313 3'AG 27128313 Downstream 8bp 37829 chr15 27128320 27128320 1 + C G LUAD 27128320 + 27128300 27128340 41 GTCTGTCTTTCAGAGCGCATCACTCAGGTGAGGACCGACAT GTCTGTCTTTCAGAGCGCATGACTCAGGTGAGGACCGACAT Direct Gain 0 0.928214402417448 NA NA prediction 0.856428804834896 Functional Gain - GABRA5 ENSG00000186297 CDS Human protein_coding chr15:27128320 chr15:27128320 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41121 0 0 0 0 2 GABRA5 chr15:27128380 5'GT 27128380 Upstream 61bp 37830 chr20 60878716 60878716 1 + T G DLBC 60878716 + 60878696 60878736 41 GGAGTTTCGGGCGGGAAAGATGTCCCTGAAGGGGACCACCG GGAGTTTCGGGCGGGAAAGAGGTCCCTGAAGGGGACCACCG Direct Gain 0 0.928196169894978 NA NA prediction 0.856392339789955 Functional Gain - ADRM1 ENSG00000130706 CDS Human protein_coding chr20:60878716 chr20:60878716 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41124 0 0 1 0 1 ADRM1 chr20:60878624 3'AG 60878624 Downstream 93bp 37831 chr22 31592944 31592944 1 + C G BLCA 31592944 + 31592924 31592964 41 AGAAGACCCCTCCTCGTCCTCAAGGACAGAGGCCAGAGCCG AGAAGACCCCTCCTCGTCCTGAAGGACAGAGGCCAGAGCCG Direct Gain 0 0.928194352358719 NA NA prediction 0.856388704717438 Functional Gain - RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592944 chr22:31592944 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_41125 0 0 1 0 2 RNF185 chr22:31592922 3'AG 31592922 Downstream 23bp 37832 chr22 31592944 31592944 1 + C G BLCA 31592944 + 31592924 31592964 41 AGAAGACCCCTCCTCGTCCTCAAGGACAGAGGCCAGAGCCG AGAAGACCCCTCCTCGTCCTGAAGGACAGAGGCCAGAGCCG Direct Gain 0 0.928194352358719 NA NA prediction 0.856388704717438 Functional Gain - RNF185 ENSG00000138942 CDS Human protein_coding chr22:31592944 chr22:31592944 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_41125 0 0 1 0 2 RNF185 chr22:31592976 5'GT 31592976 Upstream 33bp 37833 chr17 40934832 40934832 1 + C G LUSC 40934832 + 40934812 40934852 41 TCAGAGGAGGTGGAGATGCTCAAGGGGCTGCAGCACCCCAA TCAGAGGAGGTGGAGATGCTGAAGGGGCTGCAGCACCCCAA Direct Gain 0 0.928188977509431 NA NA prediction 0.856377955018861 Functional Gain - WNK4 ENSG00000126562 CDS Human protein_coding chr17:40934832 chr17:40934832 synonymous SNV . 0 21 hm7G_associated_SNPs_41127 0 0 1 0 1 WNK4 chr17:40934776 3'AG 40934776 Downstream 57bp 37834 chr1 113212200 113212200 1 + C G LUAD 113212200 + 113212180 113212220 41 GCCAAGGAGTTTATTAAAATCATAGAGAATGCAGAAAATGA GCCAAGGAGTTTATTAAAATGATAGAGAATGCAGAAAATGA Direct Gain 0 0.928186255628017 NA NA prediction 0.856372511256033 Functional Gain - CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113212200 chr1:113212200 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41128 0 0 0 0 2 CAPZA1 chr1:113212165 3'AG 113212165 Downstream 36bp 37835 chr1 113212200 113212200 1 + C G LUAD 113212200 + 113212180 113212220 41 GCCAAGGAGTTTATTAAAATCATAGAGAATGCAGAAAATGA GCCAAGGAGTTTATTAAAATGATAGAGAATGCAGAAAATGA Direct Gain 0 0.928186255628017 NA NA prediction 0.856372511256033 Functional Gain - CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113212200 chr1:113212200 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41128 0 0 0 0 2 CAPZA1 chr1:113212227 5'GT 113212227 Upstream 28bp 37836 chr6 7414492 7414492 1 + C G CESC 7414492 + 7414472 7414512 41 TCCCTGCACTCCTAGAAAATCAAGTGGAGGAAAGGACTTGT TCCCTGCACTCCTAGAAAATGAAGTGGAGGAAAGGACTTGT Direct Gain 0 0.928165090747863 NA NA prediction 0.856330181495727 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7414492 chr6:7414492 nonsynonymous SNV 0.509 0 21 hm7G_associated_SNPs_41129 0 0 1 0 1 RIOK1 chr6:7414471 3'AG 7414471 Downstream 22bp 37837 chr11 60292780 60292780 1 + A G UCEC 60292780 + 60292760 60292800 41 TCATTTTAATTCTGTGTCATACAGGAATTATGGACAAGCAG TCATTTTAATTCTGTGTCATGCAGGAATTATGGACAAGCAG Direct Gain 0 0.928156481501182 NA NA prediction 0.856312963002364 Functional Gain - MS4A13 ENSG00000204979 CDS Human protein_coding chr11:60292780 chr11:60292780 nonsynonymous SNV 0.913 3 21 hm7G_associated_SNPs_41130 0 0 0 0 1 MS4A13 chr11:60292799 5'GT 60292799 Upstream 20bp 37838 chr16 69373742 69373742 1 + T G COAD 69373742 + 69373722 69373762 41 CAGGGGGAAAAATGCGGCCTTTGACTGAAGAGGAGACCCGT CAGGGGGAAAAATGCGGCCTGTGACTGAAGAGGAGACCCGT Direct Gain 0 0.928142026011598 NA NA prediction 0.856284052023196 Functional Gain - NIP7 ENSG00000132603 CDS Human protein_coding chr16:69373742 chr16:69373742 nonsynonymous SNV 0.981 4 21 hm7G_associated_SNPs_41131 0 0 1 0 1 NIP7 chr16:69373788 5'GT 69373788 Upstream 47bp 37839 chr5 78378649 78378649 1 + A G COAD 78378649 + 78378629 78378669 41 TAGTATTTTGAGCACGTTGAAGAAGCTGTGTGGGCTGTGGA TAGTATTTTGAGCACGTTGAGGAAGCTGTGTGGGCTGTGGA Direct Gain 0 0.928138780553625 NA NA prediction 0.856277561107251 Functional Gain - BHMT2 ENSG00000132840 CDS Human protein_coding chr5:78378649 chr5:78378649 synonymous SNV . 0 21 hm7G_associated_SNPs_41133 0 0 0 0 1 BHMT2 chr5:78378632 3'AG 78378632 Downstream 18bp 37840 chr12 108912274 108912274 1 + C G BLCA 108912274 + 108912254 108912294 41 AAGCTCTTCATGCACGCCCTCAAGATGGACCCGGACTTCGT AAGCTCTTCATGCACGCCCTGAAGATGGACCCGGACTTCGT Direct Gain 0 0.928136474268314 NA NA prediction 0.856272948536628 Functional Gain - FICD ENSG00000198855 CDS Human protein_coding chr12:108912274 chr12:108912274 synonymous SNV . 0 21 hm7G_associated_SNPs_41134 0 0 0 0 1 FICD chr12:108912177 3'AG 108912177 Downstream 98bp 37841 chr4 71497599 71497599 1 + A G SKCM 71497599 + 71497579 71497619 41 GAATGCCTGGATTTAGCAGTAAAAGTGAGGAGGTATGTACG GAATGCCTGGATTTAGCAGTGAAAGTGAGGAGGTATGTACG Direct Gain 0 0.928135448225931 NA NA prediction 0.856270896451862 Functional Gain - ENAM ENSG00000132464 CDS Human protein_coding chr4:71497599 chr4:71497599 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41135 0 0 0 0 2 ENAM chr4:71497566 3'AG 71497566 Downstream 34bp 37842 chr4 71497599 71497599 1 + A G SKCM 71497599 + 71497579 71497619 41 GAATGCCTGGATTTAGCAGTAAAAGTGAGGAGGTATGTACG GAATGCCTGGATTTAGCAGTGAAAGTGAGGAGGTATGTACG Direct Gain 0 0.928135448225931 NA NA prediction 0.856270896451862 Functional Gain - ENAM ENSG00000132464 CDS Human protein_coding chr4:71497599 chr4:71497599 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41135 0 0 0 0 2 ENAM chr4:71497610 5'GT 71497610 Upstream 12bp 37843 chr7 134346821 134346821 1 + C G ESCA 134346821 + 134346801 134346841 41 AAACCATTCTGATATCTGCTCATGGAAATAGCAGTAGGGCA AAACCATTCTGATATCTGCTGATGGAAATAGCAGTAGGGCA Direct Gain 0 0.928127313323342 NA NA prediction 0.856254626646685 Functional Gain - BPGM ENSG00000172331 CDS Human protein_coding chr7:134346821 chr7:134346821 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41136 0 0 1 0 1 BPGM chr7:134346860 5'GT 134346860 Upstream 40bp 37844 chr9 133569272 133569272 1 + A G UCEC 133569272 + 133569252 133569292 41 ATCTAGTGGTGCCGGGGGATACAATCACTACGGACACAGGA ATCTAGTGGTGCCGGGGGATGCAATCACTACGGACACAGGA Direct Gain 0 0.928109324947464 NA NA prediction 0.856218649894928 Functional Gain - EXOSC2 ENSG00000130713 CDS Human protein_coding chr9:133569272 chr9:133569272 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41138 0 0 1 0 1 EXOSC2 chr9:133569300 5'GT 133569300 Upstream 29bp 37845 chr6 6654820 6654820 1 + C G LUAD 6654820 + 6654800 6654840 41 ACTGTACACTGAAAAACGGTCCACCGTGGCCTGTGCCAATG ACTGTACACTGAAAAACGGTGCACCGTGGCCTGTGCCAATG Direct Gain 0 0.92809182265923 NA NA prediction 0.856183645318459 Functional Gain - LY86 ENSG00000112799 CDS Human protein_coding chr6:6654820 chr6:6654820 nonsynonymous SNV 0.129 1 21 hm7G_associated_SNPs_41140 0 0 0 5 1 LY86 chr6:6654777 3'AG 6654777 Downstream 44bp 37846 chr11 112100944 112100944 1 + A G UCEC 112100944 + 112100924 112100964 41 TCCATAGTTGTGGTGACAGTACATGGAGAGGTATGTGCAGA TCCATAGTTGTGGTGACAGTGCATGGAGAGGTATGTGCAGA Direct Gain 0 0.928065974002292 NA NA prediction 0.856131948004585 Functional Gain - PTS ENSG00000150787 CDS Human protein_coding chr11:112100944 chr11:112100944 synonymous SNV . 0 21 hm7G_associated_SNPs_41142 0 0 1 0 2 PTS chr11:112100931 3'AG 112100931 Downstream 14bp 37847 chr11 112100944 112100944 1 + A G UCEC 112100944 + 112100924 112100964 41 TCCATAGTTGTGGTGACAGTACATGGAGAGGTATGTGCAGA TCCATAGTTGTGGTGACAGTGCATGGAGAGGTATGTGCAGA Direct Gain 0 0.928065974002292 NA NA prediction 0.856131948004585 Functional Gain - PTS ENSG00000150787 CDS Human protein_coding chr11:112100944 chr11:112100944 synonymous SNV . 0 21 hm7G_associated_SNPs_41142 0 0 1 0 2 PTS chr11:112100953 5'GT 112100953 Upstream 10bp 37848 chr11 93127795 93127795 1 + A G LUAD 93127795 + 93127775 93127815 41 TTAAAAATGGAATTAGAAATAAAAGAAAAAATGTTAGCAAA TTAAAAATGGAATTAGAAATGAAAGAAAAAATGTTAGCAAA Direct Gain 0 0.928048111900898 NA NA prediction 0.856096223801795 Functional Gain - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93127795 chr11:93127795 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41143 0 0 0 0 1 DEUP1 chr11:93127822 5'GT 93127822 Upstream 28bp 37849 chr1 151065763 151065763 1 + C G BLCA 151065763 + 151065743 151065783 41 GATGTCGTAGAGTTACTTATCAAATATGGAGCTGATGTCCA GATGTCGTAGAGTTACTTATGAAATATGGAGCTGATGTCCA Direct Gain 0 0.928005241774498 NA NA prediction 0.856010483548997 Functional Gain - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151065763 chr1:151065763 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41144 0 0 1 0 1 GABPB2 chr1:151065862 5'GT 151065862 Upstream 100bp 37850 chr8 56708582 56708582 1 + A G rs61753686 56708582 + 56708562 56708602 41 CATCGGCAGGTCAGGTATTTAGAGAAGAATGTGAAGCTTAA CATCGGCAGGTCAGGTATTTGGAGAAGAATGTGAAGCTTAA Direct Gain 0 0.928003578710824 NA NA prediction 0.856007157421647 Functional Gain - TGS1 ENSG00000137574 CDS Human protein_coding chr8:56708582 chr8:56708582 synonymous SNV . 0 21 hm7G_associated_SNPs_41145 0 0 0 0 1 TGS1 chr8:56708537 3'AG 56708537 Downstream 46bp 37851 chr20 31812179 31812179 1 + T G UCEC 31812179 + 31812159 31812199 41 AGCATCAACATCACCAACATTCAGCTGGACTGTGGTGGGAT AGCATCAACATCACCAACATGCAGCTGGACTGTGGTGGGAT Direct Gain 0 0.927991771646585 NA NA prediction 0.85598354329317 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31812179 chr20:31812179 nonsynonymous SNV 0.159 0 21 hm7G_associated_SNPs_41146 0 0 0 0 2 BPIFA3 chr20:31812161 3'AG 31812161 Downstream 19bp 37852 chr20 31812179 31812179 1 + T G UCEC 31812179 + 31812159 31812199 41 AGCATCAACATCACCAACATTCAGCTGGACTGTGGTGGGAT AGCATCAACATCACCAACATGCAGCTGGACTGTGGTGGGAT Direct Gain 0 0.927991771646585 NA NA prediction 0.85598354329317 Functional Gain - BPIFA3 ENSG00000131059 CDS Human protein_coding chr20:31812179 chr20:31812179 nonsynonymous SNV 0.159 0 21 hm7G_associated_SNPs_41146 0 0 0 0 2 BPIFA3 chr20:31812268 5'GT 31812268 Upstream 90bp 37853 chrX 80457739 80457739 1 + A G STAD 80457739 + 80457719 80457759 41 TTGCATCTTCCTCTGGCTCTACAGCGGTAAGGAGAGTGGGG TTGCATCTTCCTCTGGCTCTGCAGCGGTAAGGAGAGTGGGG Direct Gain 0 0.927978786608743 NA NA prediction 0.855957573217486 Functional Gain - SH3BGRL ENSG00000131171 CDS Human protein_coding chrX:80457739 chrX:80457739 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41148 0 0 1 4 1 SH3BGRL chrX:80457744 5'GT 80457744 Upstream 6bp 37854 chr2 219256003 219256003 1 + A G OV 219256003 + 219255983 219256023 41 CACCGTGGCCGTGGACATTTACCAGGGGGTGAGCGCGGGTG CACCGTGGCCGTGGACATTTGCCAGGGGGTGAGCGCGGGTG Direct Gain 0 0.927945274873501 NA NA prediction 0.855890549747003 Functional Gain - SLC11A1 ENSG00000018280 CDS Human protein_coding chr2:219256003 chr2:219256003 nonsynonymous SNV 0.855 2 21 hm7G_associated_SNPs_41149 0 0 0 0 2 SLC11A1 chr2:219255921 3'AG 219255921 Downstream 83bp 37855 chr2 219256003 219256003 1 + A G OV 219256003 + 219255983 219256023 41 CACCGTGGCCGTGGACATTTACCAGGGGGTGAGCGCGGGTG CACCGTGGCCGTGGACATTTGCCAGGGGGTGAGCGCGGGTG Direct Gain 0 0.927945274873501 NA NA prediction 0.855890549747003 Functional Gain - SLC11A1 ENSG00000018280 CDS Human protein_coding chr2:219256003 chr2:219256003 nonsynonymous SNV 0.855 2 21 hm7G_associated_SNPs_41149 0 0 0 0 2 SLC11A1 chr2:219256010 5'GT 219256010 Upstream 8bp 37856 chr8 37635552 37635552 1 + C G UCEC 37635552 + 37635532 37635572 41 TTTTGGAGAGCGGGATTACTCAAAGAAACCCACCCCGGACA TTTTGGAGAGCGGGATTACTGAAAGAAACCCACCCCGGACA Direct Gain 0 0.927897746639584 NA NA prediction 0.855795493279169 Functional Gain - PLPBP ENSG00000147471 CDS Human protein_coding chr8:37635552 chr8:37635552 stopgain 0.993 1 21 hm7G_associated_SNPs_41153 0 0 1 0 1 PLPBP chr8:37635491 3'AG 37635491 Downstream 62bp 37857 chr5 176733119 176733119 1 + C G KIRC 176733119 + 176733099 176733139 41 GAATTTGGTCTTGCCCGATTCAAAAGCAACGTGACCAAGAC GAATTTGGTCTTGCCCGATTGAAAAGCAACGTGACCAAGAC Direct Gain 0 0.927889084524268 NA NA prediction 0.855778169048536 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733119 chr5:176733119 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41154 0 0 1 0 2 PRELID1 chr5:176733099 3'AG 176733099 Downstream 21bp 37858 chr5 176733119 176733119 1 + C G KIRC 176733119 + 176733099 176733139 41 GAATTTGGTCTTGCCCGATTCAAAAGCAACGTGACCAAGAC GAATTTGGTCTTGCCCGATTGAAAAGCAACGTGACCAAGAC Direct Gain 0 0.927889084524268 NA NA prediction 0.855778169048536 Functional Gain - PRELID1 ENSG00000169230 CDS Human protein_coding chr5:176733119 chr5:176733119 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41154 0 0 1 0 2 PRELID1 chr5:176733177 5'GT 176733177 Upstream 59bp 37859 chr17 57895087 57895087 1 + A G UCEC 57895087 + 57895067 57895107 41 TTACAGAAAATTTTTGTTATAATAACATTCAGCAAGCACAT TTACAGAAAATTTTTGTTATGATAACATTCAGCAAGCACAT Direct Gain 0 0.927882434540342 NA NA prediction 0.855764869080683 Functional Gain - VMP1 ENSG00000062716 CDS Human protein_coding chr17:57895087 chr17:57895087 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_41155 0 0 1 0 2 VMP1 chr17:57895073 3'AG 57895073 Downstream 15bp 37860 chr17 57895087 57895087 1 + A G UCEC 57895087 + 57895067 57895107 41 TTACAGAAAATTTTTGTTATAATAACATTCAGCAAGCACAT TTACAGAAAATTTTTGTTATGATAACATTCAGCAAGCACAT Direct Gain 0 0.927882434540342 NA NA prediction 0.855764869080683 Functional Gain - VMP1 ENSG00000062716 CDS Human protein_coding chr17:57895087 chr17:57895087 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_41155 0 0 1 0 2 VMP1 chr17:57895134 5'GT 57895134 Upstream 48bp 37861 chr5 23509610 23509610 1 + A G OV 23509610 + 23509590 23509630 41 CTTCAAAGACATTTCCATATACTTCACCAAGGAAGAATGGG CTTCAAAGACATTTCCATATGCTTCACCAAGGAAGAATGGG Direct Gain 0 0.927863578269969 NA NA prediction 0.855727156539938 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509610 chr5:23509610 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_41156 0 0 0 0 2 PRDM9 chr5:23509579 3'AG 23509579 Downstream 32bp 37862 chr5 23509610 23509610 1 + A G OV 23509610 + 23509590 23509630 41 CTTCAAAGACATTTCCATATACTTCACCAAGGAAGAATGGG CTTCAAAGACATTTCCATATGCTTCACCAAGGAAGAATGGG Direct Gain 0 0.927863578269969 NA NA prediction 0.855727156539938 Functional Gain - PRDM9 ENSG00000164256 CDS Human protein_coding chr5:23509610 chr5:23509610 nonsynonymous SNV 0.991 3 21 hm7G_associated_SNPs_41156 0 0 0 0 2 PRDM9 chr5:23509702 5'GT 23509702 Upstream 93bp 37863 chr9 74846080 74846080 1 + A G SKCM 74846080 + 74846060 74846100 41 AGTCCTGAAACATGAAGTCAAGATAGGGCTGGGTACAGGTT AGTCCTGAAACATGAAGTCAGGATAGGGCTGGGTACAGGTT Direct Gain 0 0.927838349682845 NA NA prediction 0.85567669936569 Functional Gain - GDA ENSG00000119125 CDS Human protein_coding chr9:74846080 chr9:74846080 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41158 0 0 1 0 2 GDA chr9:74846030 3'AG 74846030 Downstream 51bp 37864 chr9 74846080 74846080 1 + A G SKCM 74846080 + 74846060 74846100 41 AGTCCTGAAACATGAAGTCAAGATAGGGCTGGGTACAGGTT AGTCCTGAAACATGAAGTCAGGATAGGGCTGGGTACAGGTT Direct Gain 0 0.927838349682845 NA NA prediction 0.85567669936569 Functional Gain - GDA ENSG00000119125 CDS Human protein_coding chr9:74846080 chr9:74846080 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41158 0 0 1 0 2 GDA chr9:74846097 5'GT 74846097 Upstream 18bp 37865 chr4 71889340 71889340 1 + C G ESCA 71889340 + 71889320 71889360 41 AGACAGAGTGGACAATTTATCAAGACTGGCATGACTGGATG AGACAGAGTGGACAATTTATGAAGACTGGCATGACTGGATG Direct Gain 0 0.927837823012107 NA NA prediction 0.855675646024215 Functional Gain - DCK ENSG00000156136 CDS Human protein_coding chr4:71889340 chr4:71889340 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41159 0 0 1 0 2 DCK chr4:71889276 3'AG 71889276 Downstream 65bp 37866 chr4 71889340 71889340 1 + C G ESCA 71889340 + 71889320 71889360 41 AGACAGAGTGGACAATTTATCAAGACTGGCATGACTGGATG AGACAGAGTGGACAATTTATGAAGACTGGCATGACTGGATG Direct Gain 0 0.927837823012107 NA NA prediction 0.855675646024215 Functional Gain - DCK ENSG00000156136 CDS Human protein_coding chr4:71889340 chr4:71889340 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41159 0 0 1 0 2 DCK chr4:71889423 5'GT 71889423 Upstream 84bp 37867 chr13 77574603 77574603 1 + C G BLCA 77574603 + 77574583 77574623 41 TTTAAACTAGGAAACATGTTCAACCAAATGGCAAAGTGGGT TTTAAACTAGGAAACATGTTGAACCAAATGGCAAAGTGGGT Direct Gain 0 0.927806747890109 NA NA prediction 0.855613495780218 Functional Gain - CLN5 ENSG00000102805 CDS Human protein_coding chr13:77574603 chr13:77574603 nonsynonymous SNV 0.944 4 21 hm7G_associated_SNPs_41160 0 0 0 0 1 CLN5 chr13:77574593 3'AG 77574593 Downstream 11bp 37868 chr18 29784241 29784241 1 + C G CESC 29784241 + 29784221 29784261 41 ACAGTTCAACACGAGTTCCTCCACGCTCTGGGATTCTGGCA ACAGTTCAACACGAGTTCCTGCACGCTCTGGGATTCTGGCA Direct Gain 0 0.927759558142643 NA NA prediction 0.855519116285286 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29784241 chr18:29784241 synonymous SNV . 0 21 hm7G_associated_SNPs_41162 0 0 0 0 2 MEP1B chr18:29784145 3'AG 29784145 Downstream 97bp 37869 chr18 29784241 29784241 1 + C G CESC 29784241 + 29784221 29784261 41 ACAGTTCAACACGAGTTCCTCCACGCTCTGGGATTCTGGCA ACAGTTCAACACGAGTTCCTGCACGCTCTGGGATTCTGGCA Direct Gain 0 0.927759558142643 NA NA prediction 0.855519116285286 Functional Gain - MEP1B ENSG00000141434 CDS Human protein_coding chr18:29784241 chr18:29784241 synonymous SNV . 0 21 hm7G_associated_SNPs_41162 0 0 0 0 2 MEP1B chr18:29784323 5'GT 29784323 Upstream 83bp 37870 chr19 13051170 13051170 1 + C G rs79497711 13051170 + 13051150 13051190 41 TTGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAA TTGGAAGACGATTGGGACTTGCTGCCACCCAAGAAGATAAA Direct Gain 0 0.927746475012285 NA NA prediction 0.855492950024569 Functional Gain - CALR ENSG00000179218 CDS Human protein_coding chr19:13051170 chr19:13051170 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_41164 0 0 1 0 1 CALR chr19:13051266 5'GT 13051266 Upstream 97bp 37871 chr1 150054023 150054023 1 + T G COAD 150054023 + 150054003 150054043 41 TAAAGAATCTCATGGAAGATTTTCAGAAGAAGAAACCAAAA TAAAGAATCTCATGGAAGATGTTCAGAAGAAGAAACCAAAA Direct Gain 0 0.927723161415891 NA NA prediction 0.855446322831781 Functional Gain - VPS45 ENSG00000136631 CDS Human protein_coding chr1:150054023 chr1:150054023 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41165 0 0 1 1 1 VPS45 chr1:150053966 3'AG 150053966 Downstream 58bp 37872 chr12 100811853 100811853 1 + T G KIRP 100811853 + 100811833 100811873 41 GCCCCACGCTATGCCAGCATTCTCATGGGGATCTCAAACGG GCCCCACGCTATGCCAGCATGCTCATGGGGATCTCAAACGG Direct Gain 0 0.927712112726164 NA NA prediction 0.855424225452329 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100811853 chr12:100811853 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41166 0 0 0 0 2 SLC17A8 chr12:100811807 3'AG 100811807 Downstream 47bp 37873 chr12 100811853 100811853 1 + T G KIRP 100811853 + 100811833 100811873 41 GCCCCACGCTATGCCAGCATTCTCATGGGGATCTCAAACGG GCCCCACGCTATGCCAGCATGCTCATGGGGATCTCAAACGG Direct Gain 0 0.927712112726164 NA NA prediction 0.855424225452329 Functional Gain - SLC17A8 ENSG00000179520 CDS Human protein_coding chr12:100811853 chr12:100811853 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41166 0 0 0 0 2 SLC17A8 chr12:100811934 5'GT 100811934 Upstream 82bp 37874 chr19 39962366 39962366 1 + C G CESC 39962366 + 39962346 39962386 41 CCTGGTGCTGGCTGGGGGCTCAAAGGTGAGGTGGGCATGGC CCTGGTGCTGGCTGGGGGCTGAAAGGTGAGGTGGGCATGGC Direct Gain 0 0.927666268734758 NA NA prediction 0.855332537469516 Functional Gain - SUPT5H ENSG00000196235 CDS Human protein_coding chr19:39962366 chr19:39962366 stopgain 0.651 1 21 hm7G_associated_SNPs_41170 0 0 1 0 1 SUPT5H chr19:39962370 5'GT 39962370 Upstream 5bp 37875 chr12 6838552 6838552 1 + A G OV 6838552 + 6838532 6838572 41 CCAGCGGCTCGAGGTTGACTACAGCATCGGGCGGGACATCC CCAGCGGCTCGAGGTTGACTGCAGCATCGGGCGGGACATCC Direct Gain 0 0.927658201845159 NA NA prediction 0.855316403690318 Functional Gain - COPS7A ENSG00000111652 CDS Human protein_coding chr12:6838552 chr12:6838552 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41171 0 0 1 0 1 COPS7A chr12:6838615 5'GT 6838615 Upstream 64bp 37876 chr2 97462782 97462782 1 + A G LUSC 97462782 + 97462762 97462802 41 GGCCATCGTGCAGAAGGTAAACAACGAGGGTGAGGGTGACC GGCCATCGTGCAGAAGGTAAGCAACGAGGGTGAGGGTGACC Direct Gain 0 0.927655110610477 NA NA prediction 0.855310221220954 Functional Gain - CNNM4 ENSG00000158158 CDS Human protein_coding chr2:97462782 chr2:97462782 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_41172 0 0 1 0 1 CNNM4 chr2:97462749 3'AG 97462749 Downstream 34bp 37877 chr16 20801935 20801935 1 + A G UCEC 20801935 + 20801915 20801955 41 GATGTAAATGGCAATGTTCTACCTCCTGGACAAGAAGGAGA GATGTAAATGGCAATGTTCTGCCTCCTGGACAAGAAGGAGA Direct Gain 0 0.927624891741899 NA NA prediction 0.855249783483798 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20801935 chr16:20801935 synonymous SNV . 0 21 hm7G_associated_SNPs_41173 0 0 1 0 2 ACSM3 chr16:20801909 3'AG 20801909 Downstream 27bp 37878 chr16 20801935 20801935 1 + A G UCEC 20801935 + 20801915 20801955 41 GATGTAAATGGCAATGTTCTACCTCCTGGACAAGAAGGAGA GATGTAAATGGCAATGTTCTGCCTCCTGGACAAGAAGGAGA Direct Gain 0 0.927624891741899 NA NA prediction 0.855249783483798 Functional Gain - ACSM3 ENSG00000005187 CDS Human protein_coding chr16:20801935 chr16:20801935 synonymous SNV . 0 21 hm7G_associated_SNPs_41173 0 0 1 0 2 ACSM3 chr16:20802010 5'GT 20802010 Upstream 76bp 37879 chr6 142519697 142519697 1 + T G CESC 142519697 + 142519677 142519717 41 AACTATACTGGAATACAGATTCCTCCGGGTGCACACGCTCC AACTATACTGGAATACAGATGCCTCCGGGTGCACACGCTCC Direct Gain 0 0.927622437369736 NA NA prediction 0.855244874739473 Functional Gain - VTA1 ENSG00000009844 CDS Human protein_coding chr6:142519697 chr6:142519697 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_41174 0 0 1 0 1 VTA1 chr6:142519752 5'GT 142519752 Upstream 56bp 37880 chr16 88874608 88874608 1 + C G HNSC 88874608 + 88874588 88874628 41 ATCCGCACCGACACCTACGTCAAGCTGGACAAGGCCGCGGA ATCCGCACCGACACCTACGTGAAGCTGGACAAGGCCGCGGA Direct Gain 0 0.92759985813808 NA NA prediction 0.855199716276159 Functional Gain - CDT1 ENSG00000167513 CDS Human protein_coding chr16:88874608 chr16:88874608 synonymous SNV . 0 21 hm7G_associated_SNPs_41175 0 0 1 0 1 CDT1 chr16:88874523 3'AG 88874523 Downstream 86bp 37881 chrX 153543633 153543633 1 + C G CESC 153543633 + 153543613 153543653 41 TCTACTTTCTCTGAGATATTCAACAAGGAGTACCCTGAGCG TCTACTTTCTCTGAGATATTGAACAAGGAGTACCCTGAGCG Direct Gain 0 0.927580832889822 NA NA prediction 0.855161665779644 Functional Gain - TKTL1 ENSG00000007350 CDS Human protein_coding chrX:153543633 chrX:153543633 nonsynonymous SNV 0.933 1 21 hm7G_associated_SNPs_41176 0 0 0 0 1 TKTL1 chrX:153543687 5'GT 153543687 Upstream 55bp 37882 chr10 45486408 45486408 1 + T G LUSC 45486408 + 45486388 45486428 41 TTTTTCAGAGCGGACAAAATTAAAAGACTGCGAGTACCCGC TTTTTCAGAGCGGACAAAATGAAAAGACTGCGAGTACCCGC Direct Gain 0 0.927579877904781 NA NA prediction 0.855159755809562 Functional Gain - RASSF4 ENSG00000107551 CDS Human protein_coding chr10:45486408 chr10:45486408 stopgain 1.000 1 21 hm7G_associated_SNPs_41177 0 0 1 0 1 RASSF4 chr10:45486396 3'AG 45486396 Downstream 13bp 37883 chrX 79282315 79282315 1 + T G LGG 79282315 + 79282295 79282335 41 CACTGAAGGTGTTAAAACATTCTCCTTTAAAGAAACTGAGT CACTGAAGGTGTTAAAACATGCTCCTTTAAAGAAACTGAGT Direct Gain 0 0.927536928624643 NA NA prediction 0.855073857249285 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79282315 chrX:79282315 nonsynonymous SNV 0.995 5 21 hm7G_associated_SNPs_41180 0 0 0 0 1 TBX22 chrX:79282367 5'GT 79282367 Upstream 53bp 37884 chr4 48035098 48035098 1 + A G rs550140588 48035098 + 48035078 48035118 41 GGTGCTTTGAGTGTTCTCATAAGGTATGTGAGCAACAGGGA GGTGCTTTGAGTGTTCTCATGAGGTATGTGAGCAACAGGGA Direct Gain 0 0.927534617898399 NA NA prediction 0.855069235796797 Functional Gain - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48035098 chr4:48035098 nonsynonymous SNV 0.953 1 21 hm7G_associated_SNPs_41181 0 0 0 0 2 NIPAL1 chr4:48035010 3'AG 48035010 Downstream 89bp 37885 chr4 48035098 48035098 1 + A G rs550140588 48035098 + 48035078 48035118 41 GGTGCTTTGAGTGTTCTCATAAGGTATGTGAGCAACAGGGA GGTGCTTTGAGTGTTCTCATGAGGTATGTGAGCAACAGGGA Direct Gain 0 0.927534617898399 NA NA prediction 0.855069235796797 Functional Gain - NIPAL1 ENSG00000163293 CDS Human protein_coding chr4:48035098 chr4:48035098 nonsynonymous SNV 0.953 1 21 hm7G_associated_SNPs_41181 0 0 0 0 2 NIPAL1 chr4:48035100 5'GT 48035100 Upstream 3bp 37886 chr11 15098902 15098902 1 + A G LAML 15098902 + 15098882 15098922 41 GGCTGGCAGGCTTGCTGAGCAGATCAGGGGGCATGGTGAAG GGCTGGCAGGCTTGCTGAGCGGATCAGGGGGCATGGTGAAG Direct Gain 0 0.92753114868338 NA NA prediction 0.85506229736676 Functional Gain - CALCB ENSG00000175868 CDS Human protein_coding chr11:15098902 chr11:15098902 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41183 0 0 0 0 1 CALCB chr11:15098832 3'AG 15098832 Downstream 71bp 37887 chr10 88782084 88782084 1 + A G rs3802666 88782084 + 88782064 88782104 41 TGTTCAGTTCATGCCGTGGAAGAAGTGGTGAAGGAGGTGGT TGTTCAGTTCATGCCGTGGAGGAAGTGGTGAAGGAGGTGGT Direct Gain 0 0.927520589007011 NA NA prediction 0.855041178014021 Functional Gain - FAM25A ENSG00000188100 CDS Human protein_coding chr10:88782084 chr10:88782084 synonymous SNV . 0 21 hm7G_associated_SNPs_41184 0 0 0 1 2 FAM25A chr10:88782071 3'AG 88782071 Downstream 14bp 37888 chr10 88782084 88782084 1 + A G rs3802666 88782084 + 88782064 88782104 41 TGTTCAGTTCATGCCGTGGAAGAAGTGGTGAAGGAGGTGGT TGTTCAGTTCATGCCGTGGAGGAAGTGGTGAAGGAGGTGGT Direct Gain 0 0.927520589007011 NA NA prediction 0.855041178014021 Functional Gain - FAM25A ENSG00000188100 CDS Human protein_coding chr10:88782084 chr10:88782084 synonymous SNV . 0 21 hm7G_associated_SNPs_41184 0 0 0 1 2 FAM25A chr10:88782133 5'GT 88782133 Upstream 50bp 37889 chr4 74285239 74285239 1 + C G rs962004 74285239 + 74285219 74285259 41 CTCAGTGCACTTGTTGAGCTCGTGAAACACAAGCCCAAGGC CTCAGTGCACTTGTTGAGCTGGTGAAACACAAGCCCAAGGC Direct Gain 0 0.927514261860624 NA NA prediction 0.855028523721247 Functional Gain - ALB ENSG00000163631 CDS Human protein_coding chr4:74285239 chr4:74285239 synonymous SNV . 0 21 hm7G_associated_SNPs_41185 0 0 1 0 1 ALB chr4:74285224 3'AG 74285224 Downstream 16bp 37890 chr12 7473395 7473395 1 + T G BRCA 7473395 + 7473375 7473415 41 ATGCTCGTGCAAAAAGACCTTAAGAGGTACTTGGGCAGAAA ATGCTCGTGCAAAAAGACCTGAAGAGGTACTTGGGCAGAAA Direct Gain 0 0.927455890049444 NA NA prediction 0.854911780098888 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7473395 chr12:7473395 synonymous SNV . 0 21 hm7G_associated_SNPs_41186 0 0 0 0 2 ACSM4 chr12:7473321 3'AG 7473321 Downstream 75bp 37891 chr12 7473395 7473395 1 + T G BRCA 7473395 + 7473375 7473415 41 ATGCTCGTGCAAAAAGACCTTAAGAGGTACTTGGGCAGAAA ATGCTCGTGCAAAAAGACCTGAAGAGGTACTTGGGCAGAAA Direct Gain 0 0.927455890049444 NA NA prediction 0.854911780098888 Functional Gain - ACSM4 ENSG00000215009 CDS Human protein_coding chr12:7473395 chr12:7473395 synonymous SNV . 0 21 hm7G_associated_SNPs_41186 0 0 0 0 2 ACSM4 chr12:7473400 5'GT 7473400 Upstream 6bp 37892 chr9 72933463 72933463 1 + A G UCEC 72933463 + 72933443 72933483 41 CCCGATTAAAACAGATTTATACAGCAGAAGAAAAGTATGTG CCCGATTAAAACAGATTTATGCAGCAGAAGAAAAGTATGTG Direct Gain 0 0.927432763689389 NA NA prediction 0.854865527378779 Functional Gain - SMC5 ENSG00000198887 CDS Human protein_coding chr9:72933463 chr9:72933463 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41187 0 0 1 0 1 SMC5 chr9:72933430 3'AG 72933430 Downstream 34bp 37893 chr19 47111501 47111501 1 + A G HNSC 47111501 + 47111481 47111521 41 ACAAGGATGGAGATGGCACTATCACCACCAAGGAGTTGGGG ACAAGGATGGAGATGGCACTGTCACCACCAAGGAGTTGGGG Direct Gain 0 0.92742211777054 NA NA prediction 0.854844235541081 Functional Gain - CALM3 ENSG00000160014 CDS Human protein_coding chr19:47111501 chr19:47111501 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41188 0 0 1 0 1 CALM3 chr19:47111597 5'GT 47111597 Upstream 97bp 37894 chr3 101574243 101574243 1 + T G UCEC 101574243 + 101574223 101574263 41 TTTTTAAAATCTGCAGGCGATTCAGAAGGGAGCAGTGGGAA TTTTTAAAATCTGCAGGCGAGTCAGAAGGGAGCAGTGGGAA Direct Gain 0 0.927408525110861 NA NA prediction 0.854817050221722 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101574243 chr3:101574243 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_41189 0 0 1 0 2 NFKBIZ chr3:101574239 3'AG 101574239 Downstream 5bp 37895 chr3 101574243 101574243 1 + T G UCEC 101574243 + 101574223 101574263 41 TTTTTAAAATCTGCAGGCGATTCAGAAGGGAGCAGTGGGAA TTTTTAAAATCTGCAGGCGAGTCAGAAGGGAGCAGTGGGAA Direct Gain 0 0.927408525110861 NA NA prediction 0.854817050221722 Functional Gain - NFKBIZ ENSG00000144802 CDS Human protein_coding chr3:101574243 chr3:101574243 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_41189 0 0 1 0 2 NFKBIZ chr3:101574302 5'GT 101574302 Upstream 60bp 37896 chr5 139061005 139061005 1 + C G HNSC 139061005 + 139060985 139061025 41 TTCAGAAAATGTGAGGAACTCAAAAAGAAGCCTTCCGCTGC TTCAGAAAATGTGAGGAACTGAAAAAGAAGCCTTCCGCTGC Direct Gain 0 0.92737291674621 NA NA prediction 0.854745833492419 Functional Gain - CXXC5 ENSG00000171604 CDS Human protein_coding chr5:139061005 chr5:139061005 synonymous SNV . 0 21 hm7G_associated_SNPs_41192 0 0 1 0 1 CXXC5 chr5:139061032 5'GT 139061032 Upstream 28bp 37897 chr15 43635200 43635200 1 + A G rs145228643 43635200 + 43635180 43635220 41 TGTCCTTTCTAGGAATGACTAAAAAGACTTATGTGGAATCT TGTCCTTTCTAGGAATGACTGAAAAGACTTATGTGGAATCT Direct Gain 0 0.927335294300141 NA NA prediction 0.854670588600282 Functional Gain - ADAL ENSG00000168803 CDS Human protein_coding chr15:43635200 chr15:43635200 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41195 0 0 0 0 2 ADAL chr15:43635192 3'AG 43635192 Downstream 9bp 37898 chr15 43635200 43635200 1 + A G rs145228643 43635200 + 43635180 43635220 41 TGTCCTTTCTAGGAATGACTAAAAAGACTTATGTGGAATCT TGTCCTTTCTAGGAATGACTGAAAAGACTTATGTGGAATCT Direct Gain 0 0.927335294300141 NA NA prediction 0.854670588600282 Functional Gain - ADAL ENSG00000168803 CDS Human protein_coding chr15:43635200 chr15:43635200 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41195 0 0 0 0 2 ADAL chr15:43635273 5'GT 43635273 Upstream 74bp 37899 chrX 128887190 128887190 1 + A G BRCA 128887190 + 128887170 128887210 41 GATGACCAAGGCAGTGAAGAACAGCAAGGAGCAGGCCCTCC GATGACCAAGGCAGTGAAGAGCAGCAAGGAGCAGGCCCTCC Direct Gain 0 0.927277108325349 NA NA prediction 0.854554216650698 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128887190 chrX:128887190 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41199 0 0 0 0 2 XPNPEP2 chrX:128887135 3'AG 128887135 Downstream 56bp 37900 chrX 128887190 128887190 1 + A G BRCA 128887190 + 128887170 128887210 41 GATGACCAAGGCAGTGAAGAACAGCAAGGAGCAGGCCCTCC GATGACCAAGGCAGTGAAGAGCAGCAAGGAGCAGGCCCTCC Direct Gain 0 0.927277108325349 NA NA prediction 0.854554216650698 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128887190 chrX:128887190 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41199 0 0 0 0 2 XPNPEP2 chrX:128887224 5'GT 128887224 Upstream 35bp 37901 chr2 61118849 61118849 1 + A G SKCM 61118849 + 61118829 61118869 41 CCGTATATAGAGATAATTGAACAACCCAGGCAGAGGGGAAT CCGTATATAGAGATAATTGAGCAACCCAGGCAGAGGGGAAT Direct Gain 0 0.927223567311753 NA NA prediction 0.854447134623506 Functional Gain - REL ENSG00000162924 CDS Human protein_coding chr2:61118849 chr2:61118849 synonymous SNV . 0 21 hm7G_associated_SNPs_41203 0 0 1 0 1 REL chr2:61118818 3'AG 61118818 Downstream 32bp 37902 chr2 101185439 101185439 1 + A G COAD 101185439 + 101185419 101185459 41 GAAGAGCTGGAGGATCATGAAGACGAGTTTAATGAGGAGGA GAAGAGCTGGAGGATCATGAGGACGAGTTTAATGAGGAGGA Direct Gain 0 0.927204663275613 NA NA prediction 0.854409326551226 Functional Gain - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101185439 chr2:101185439 synonymous SNV . 0 21 hm7G_associated_SNPs_41206 0 0 1 0 2 PDCL3 chr2:101185393 3'AG 101185393 Downstream 47bp 37903 chr2 101185439 101185439 1 + A G COAD 101185439 + 101185419 101185459 41 GAAGAGCTGGAGGATCATGAAGACGAGTTTAATGAGGAGGA GAAGAGCTGGAGGATCATGAGGACGAGTTTAATGAGGAGGA Direct Gain 0 0.927204663275613 NA NA prediction 0.854409326551226 Functional Gain - PDCL3 ENSG00000115539 CDS Human protein_coding chr2:101185439 chr2:101185439 synonymous SNV . 0 21 hm7G_associated_SNPs_41206 0 0 1 0 2 PDCL3 chr2:101185483 5'GT 101185483 Upstream 45bp 37904 chr12 6878828 6878828 1 + A G LIHC 6878828 + 6878808 6878848 41 AGCCGGAAAGAGCGAAAGAAAGAAGTGGTGGAGGTGTGGAG AGCCGGAAAGAGCGAAAGAAGGAAGTGGTGGAGGTGTGGAG Direct Gain 0 0.927199827958945 NA NA prediction 0.854399655917889 Functional Gain - PTMS ENSG00000159335 CDS Human protein_coding chr12:6878828 chr12:6878828 synonymous SNV . 0 21 hm7G_associated_SNPs_41207 0 0 1 0 2 PTMS chr12:6878769 3'AG 6878769 Downstream 60bp 37905 chr12 6878828 6878828 1 + A G LIHC 6878828 + 6878808 6878848 41 AGCCGGAAAGAGCGAAAGAAAGAAGTGGTGGAGGTGTGGAG AGCCGGAAAGAGCGAAAGAAGGAAGTGGTGGAGGTGTGGAG Direct Gain 0 0.927199827958945 NA NA prediction 0.854399655917889 Functional Gain - PTMS ENSG00000159335 CDS Human protein_coding chr12:6878828 chr12:6878828 synonymous SNV . 0 21 hm7G_associated_SNPs_41207 0 0 1 0 2 PTMS chr12:6878840 5'GT 6878840 Upstream 13bp 37906 chr20 30816070 30816070 1 + T G UCEC 30816070 + 30816050 30816090 41 TCCATCTCCTGTCTAGATTTTCTCCAAAGGAACATCCGGTG TCCATCTCCTGTCTAGATTTGCTCCAAAGGAACATCCGGTG Direct Gain 0 0.927182598244573 NA NA prediction 0.854365196489146 Functional Gain - POFUT1 ENSG00000101346 CDS Human protein_coding chr20:30816070 chr20:30816070 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_41208 0 0 1 0 1 POFUT1 chr20:30816066 3'AG 30816066 Downstream 5bp 37907 chr3 148875312 148875312 1 + A G GBM 148875312 + 148875292 148875332 41 TGGGCACCTTGGGGACTGTTACAGCAGGTGGGTGACACCTC TGGGCACCTTGGGGACTGTTGCAGCAGGTGGGTGACACCTC Direct Gain 0 0.927168686327489 NA NA prediction 0.854337372654978 Functional Gain - HPS3 ENSG00000163755 CDS Human protein_coding chr3:148875312 chr3:148875312 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41209 0 0 1 0 1 HPS3 chr3:148875318 5'GT 148875318 Upstream 7bp 37908 chr3 169700668 169700668 1 + A G UCEC 169700668 + 169700648 169700688 41 AAAAAAAGAAAAAGAGAAAAAAAAAGATGGTGAAAAGGAAG AAAAAAAGAAAAAGAGAAAAGAAAAGATGGTGAAAAGGAAG Direct Gain 0 0.927166525355571 NA NA prediction 0.854333050711142 Functional Gain - SEC62 ENSG00000008952 CDS Human protein_coding chr3:169700668 chr3:169700668 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41210 0 0 1 0 1 SEC62 chr3:169700699 5'GT 169700699 Upstream 32bp 37909 chr1 182785868 182785868 1 + A G rs369325310 182785868 + 182785848 182785888 41 GATATCCTGATTAATTTCCTAAAGGAAGTGGCTGCTGCCGC GATATCCTGATTAATTTCCTGAAGGAAGTGGCTGCTGCCGC Direct Gain 0 0.92713794084069 NA NA prediction 0.85427588168138 Functional Gain - NPL ENSG00000135838 CDS Human protein_coding chr1:182785868 chr1:182785868 synonymous SNV . 0 21 hm7G_associated_SNPs_41211 0 0 0 0 1 NPL chr1:182785849 3'AG 182785849 Downstream 20bp 37910 chr12 57995122 57995122 1 + C G KIRC 57995122 + 57995102 57995142 41 GCTCATGCAGCCAAAACTGTCAAGCATGGGGTGAGAGTTCG GCTCATGCAGCCAAAACTGTGAAGCATGGGGTGAGAGTTCG Direct Gain 0 0.927126277470074 NA NA prediction 0.854252554940148 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57995122 chr12:57995122 synonymous SNV . 0 21 hm7G_associated_SNPs_41213 0 0 0 0 2 PIP4K2C chr12:57995028 3'AG 57995028 Downstream 95bp 37911 chr12 57995122 57995122 1 + C G KIRC 57995122 + 57995102 57995142 41 GCTCATGCAGCCAAAACTGTCAAGCATGGGGTGAGAGTTCG GCTCATGCAGCCAAAACTGTGAAGCATGGGGTGAGAGTTCG Direct Gain 0 0.927126277470074 NA NA prediction 0.854252554940148 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57995122 chr12:57995122 synonymous SNV . 0 21 hm7G_associated_SNPs_41213 0 0 0 0 2 PIP4K2C chr12:57995131 5'GT 57995131 Upstream 10bp 37912 chr1 209953947 209953947 1 + A G UCEC 209953947 + 209953927 209953967 41 GCAGCTCCAGGCCAAGGAAAAGGAGGTGAGAGGGTGACCTG GCAGCTCCAGGCCAAGGAAAGGGAGGTGAGAGGGTGACCTG Direct Gain 0 0.927092985403618 NA NA prediction 0.854185970807235 Functional Gain - TRAF3IP3 ENSG00000009790 CDS Human protein_coding chr1:209953947 chr1:209953947 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41215 0 0 0 0 1 TRAF3IP3 chr1:209953951 5'GT 209953951 Upstream 5bp 37913 chrX 133632439 133632439 1 + C G rs534390401 133632439 + 133632419 133632459 41 GCTTGCTGGTGAAAAGGACCCCACGAAGTGTTGGATATAAG GCTTGCTGGTGAAAAGGACCGCACGAAGTGTTGGATATAAG Direct Gain 0 0.927087051778766 NA NA prediction 0.854174103557531 Functional Gain - HPRT1 ENSG00000165704 CDS Human protein_coding chrX:133632439 chrX:133632439 nonsynonymous SNV 0.992 2 21 hm7G_associated_SNPs_41216 0 0 1 1 2 HPRT1 chrX:133632420 3'AG 133632420 Downstream 20bp 37914 chrX 133632439 133632439 1 + C G rs534390401 133632439 + 133632419 133632459 41 GCTTGCTGGTGAAAAGGACCCCACGAAGTGTTGGATATAAG GCTTGCTGGTGAAAAGGACCGCACGAAGTGTTGGATATAAG Direct Gain 0 0.927087051778766 NA NA prediction 0.854174103557531 Functional Gain - HPRT1 ENSG00000165704 CDS Human protein_coding chrX:133632439 chrX:133632439 nonsynonymous SNV 0.992 2 21 hm7G_associated_SNPs_41216 0 0 1 1 2 HPRT1 chrX:133632466 5'GT 133632466 Upstream 28bp 37915 chr2 69002491 69002491 1 + A G PRAD 69002491 + 69002471 69002511 41 GAAGAACTGGCAGCAGAGGTACTTTGTGCTGAGGGCGCAGC GAAGAACTGGCAGCAGAGGTGCTTTGTGCTGAGGGCGCAGC Direct Gain 0 0.927073101894051 NA NA prediction 0.854146203788102 Functional Gain - ARHGAP25 ENSG00000163219 CDS Human protein_coding chr2:69002491 chr2:69002491 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41217 0 0 0 0 1 ARHGAP25 chr2:69002552 5'GT 69002552 Upstream 62bp 37916 chr20 26061884 26061884 1 + C G rs78196071 26061884 + 26061864 26061904 41 GGAACACGAAGTGGGGATCTCCACTTGGGGTGGTCAGCACT GGAACACGAAGTGGGGATCTGCACTTGGGGTGGTCAGCACT Direct Gain 0 0.927072197602487 NA NA prediction 0.854144395204974 Functional Gain - FAM182A ENSG00000125804 ncRNA_exonic Human processed_transcript chr20:26061884 chr20:26061884 . . 0 21 hm7G_associated_SNPs_41218 0 0 0 0 1 FAM182A chr20:26061800 3'AG 26061800 Downstream 85bp 37917 chr19 52937242 52937242 1 + T G LUAD 52937242 + 52937222 52937262 41 CAGCGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAAT CAGCGATGTGGCCATAGAATGCTCTCAGGAGGAGTGGAAAT Direct Gain 0 0.927059595560938 NA NA prediction 0.854119191121876 Functional Gain - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52937242 chr19:52937242 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_41219 0 0 0 0 2 ZNF534 chr19:52937208 3'AG 52937208 Downstream 35bp 37918 chr19 52937242 52937242 1 + T G LUAD 52937242 + 52937222 52937262 41 CAGCGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAAT CAGCGATGTGGCCATAGAATGCTCTCAGGAGGAGTGGAAAT Direct Gain 0 0.927059595560938 NA NA prediction 0.854119191121876 Functional Gain - ZNF534 ENSG00000198633 CDS Human protein_coding chr19:52937242 chr19:52937242 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_41219 0 0 0 0 2 ZNF534 chr19:52937334 5'GT 52937334 Upstream 93bp 37919 chr20 37210007 37210007 1 + A G UCEC 37210007 + 37209987 37210027 41 ATCATCTGGCTACGCTTCTTACTTAGCCAAGGTGAGCTTCT ATCATCTGGCTACGCTTCTTGCTTAGCCAAGGTGAGCTTCT Direct Gain 0 0.926993133194904 NA NA prediction 0.853986266389808 Functional Gain - ADIG ENSG00000182035 CDS Human protein_coding chr20:37210007 chr20:37210007 synonymous SNV . 0 21 hm7G_associated_SNPs_41222 0 0 0 0 1 ADIG chr20:37210017 5'GT 37210017 Upstream 11bp 37920 chr4 100510816 100510816 1 + C G BLCA 100510816 + 100510796 100510836 41 CCAGGTCAAAGAGTTCTACTCATATCAAAATGAGGCAGTGG CCAGGTCAAAGAGTTCTACTGATATCAAAATGAGGCAGTGG Direct Gain 0 0.926972936433383 NA NA prediction 0.853945872866765 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100510816 chr4:100510816 stopgain 0.943 1 21 hm7G_associated_SNPs_41223 0 0 0 0 2 MTTP chr4:100510800 3'AG 100510800 Downstream 17bp 37921 chr4 100510816 100510816 1 + C G BLCA 100510816 + 100510796 100510836 41 CCAGGTCAAAGAGTTCTACTCATATCAAAATGAGGCAGTGG CCAGGTCAAAGAGTTCTACTGATATCAAAATGAGGCAGTGG Direct Gain 0 0.926972936433383 NA NA prediction 0.853945872866765 Functional Gain - MTTP ENSG00000138823 CDS Human protein_coding chr4:100510816 chr4:100510816 stopgain 0.943 1 21 hm7G_associated_SNPs_41223 0 0 0 0 2 MTTP chr4:100510907 5'GT 100510907 Upstream 92bp 37922 chr17 30800897 30800897 1 + C G BLCA 30800897 + 30800877 30800917 41 GGCATTTGAGGGTTATGACTCCATCGACAGCCCCAAGGCCA GGCATTTGAGGGTTATGACTGCATCGACAGCCCCAAGGCCA Direct Gain 0 0.926963319230216 NA NA prediction 0.853926638460431 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30800897 chr17:30800897 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41225 0 0 1 0 2 PSMD11 chr17:30800819 3'AG 30800819 Downstream 79bp 37923 chr17 30800897 30800897 1 + C G BLCA 30800897 + 30800877 30800917 41 GGCATTTGAGGGTTATGACTCCATCGACAGCCCCAAGGCCA GGCATTTGAGGGTTATGACTGCATCGACAGCCCCAAGGCCA Direct Gain 0 0.926963319230216 NA NA prediction 0.853926638460431 Functional Gain - PSMD11 ENSG00000108671 CDS Human protein_coding chr17:30800897 chr17:30800897 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41225 0 0 1 0 2 PSMD11 chr17:30800963 5'GT 30800963 Upstream 67bp 37924 chr16 50118116 50118116 1 + A G HNSC 50118116 + 50118096 50118136 41 CATTTATGGAGAATTCCTTCAGTGAGTGCGGGGGACAGCTG CATTTATGGAGAATTCCTTCGGTGAGTGCGGGGGACAGCTG Direct Gain 0 0.926958186976581 NA NA prediction 0.853916373953161 Functional Gain - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50118116 chr16:50118116 nonsynonymous SNV 0.924 0 21 hm7G_associated_SNPs_41226 0 0 1 0 2 HEATR3 chr16:50118045 3'AG 50118045 Downstream 72bp 37925 chr16 50118116 50118116 1 + A G HNSC 50118116 + 50118096 50118136 41 CATTTATGGAGAATTCCTTCAGTGAGTGCGGGGGACAGCTG CATTTATGGAGAATTCCTTCGGTGAGTGCGGGGGACAGCTG Direct Gain 0 0.926958186976581 NA NA prediction 0.853916373953161 Functional Gain - HEATR3 ENSG00000155393 CDS Human protein_coding chr16:50118116 chr16:50118116 nonsynonymous SNV 0.924 0 21 hm7G_associated_SNPs_41226 0 0 1 0 2 HEATR3 chr16:50118202 5'GT 50118202 Upstream 87bp 37926 chr17 49340701 49340701 1 + C G LUAD 49340701 + 49340681 49340721 41 CAAAAGGTAATTTTCCACCTCAAAAGAAGCCAGTTTGGGTG CAAAAGGTAATTTTCCACCTGAAAAGAAGCCAGTTTGGGTG Direct Gain 0 0.926917762102405 NA NA prediction 0.85383552420481 Functional Gain - UTP18 ENSG00000011260 CDS Human protein_coding chr17:49340701 chr17:49340701 nonsynonymous SNV 0.106 0 21 hm7G_associated_SNPs_41227 0 0 1 0 2 UTP18 chr17:49340635 3'AG 49340635 Downstream 67bp 37927 chr17 49340701 49340701 1 + C G LUAD 49340701 + 49340681 49340721 41 CAAAAGGTAATTTTCCACCTCAAAAGAAGCCAGTTTGGGTG CAAAAGGTAATTTTCCACCTGAAAAGAAGCCAGTTTGGGTG Direct Gain 0 0.926917762102405 NA NA prediction 0.85383552420481 Functional Gain - UTP18 ENSG00000011260 CDS Human protein_coding chr17:49340701 chr17:49340701 nonsynonymous SNV 0.106 0 21 hm7G_associated_SNPs_41227 0 0 1 0 2 UTP18 chr17:49340747 5'GT 49340747 Upstream 47bp 37928 chrX 128879196 128879196 1 + A G rs575430120 128879196 + 128879176 128879216 41 TAGAACGAGTACATCGGCCAACATGACGAGAGGCGTGCGTG TAGAACGAGTACATCGGCCAGCATGACGAGAGGCGTGCGTG Direct Gain 0 0.926914215561972 NA NA prediction 0.853828431123944 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128879196 chrX:128879196 synonymous SNV . 0 21 hm7G_associated_SNPs_41228 0 0 0 0 2 XPNPEP2 chrX:128879179 3'AG 128879179 Downstream 18bp 37929 chrX 128879196 128879196 1 + A G rs575430120 128879196 + 128879176 128879216 41 TAGAACGAGTACATCGGCCAACATGACGAGAGGCGTGCGTG TAGAACGAGTACATCGGCCAGCATGACGAGAGGCGTGCGTG Direct Gain 0 0.926914215561972 NA NA prediction 0.853828431123944 Functional Gain - XPNPEP2 ENSG00000122121 CDS Human protein_coding chrX:128879196 chrX:128879196 synonymous SNV . 0 21 hm7G_associated_SNPs_41228 0 0 0 0 2 XPNPEP2 chrX:128879242 5'GT 128879242 Upstream 47bp 37930 chr18 3272997 3272997 1 + T G UCEC 3272997 + 3272977 3273017 41 CCAGTCACAGATTCAGGAGTTCAAAGAGGCCTTCAACATGA CCAGTCACAGATTCAGGAGTGCAAAGAGGCCTTCAACATGA Direct Gain 0 0.926905606404473 NA NA prediction 0.853811212808945 Functional Gain - MYL12B ENSG00000118680 CDS Human protein_coding chr18:3272997 chr18:3272997 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41229 0 0 0 0 1 MYL12B chr18:3273080 5'GT 3273080 Upstream 84bp 37931 chr8 120430335 120430335 1 + C G HNSC 120430335 + 120430315 120430355 41 TGTGTGTTCGATGGGGTCATCTACCGCAGTGGAGAGAAATT TGTGTGTTCGATGGGGTCATGTACCGCAGTGGAGAGAAATT Direct Gain 0 0.926870168780098 NA NA prediction 0.853740337560197 Functional Gain - NOV ENSG00000136999 CDS Human protein_coding chr8:120430335 chr8:120430335 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_41233 0 0 0 0 1 NOV chr8:120430298 3'AG 120430298 Downstream 38bp 37932 chr3 89448494 89448494 1 + T G UCEC 89448494 + 89448474 89448514 41 CAAGAAACAAGTTATACCATTCTGAGGGCAAGAGGCACAAA CAAGAAACAAGTTATACCATGCTGAGGGCAAGAGGCACAAA Direct Gain 0 0.9268415425544 NA NA prediction 0.853683085108799 Functional Gain - EPHA3 ENSG00000044524 CDS Human protein_coding chr3:89448494 chr3:89448494 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_41234 0 0 0 0 1 EPHA3 chr3:89448468 3'AG 89448468 Downstream 27bp 37933 chr6 34850826 34850826 1 - G C rs15922 34850826 - 34850806 34850846 41 GGATGTCTCAGATTTAACAACAGTTGAAAGGGAAGACTCAT GGATGTCTCAGATTTAACAAGAGTTGAAAGGGAAGACTCAT Direct Gain 0 0.926841323936894 NA NA prediction 0.853682647873787 Functional Gain - TAF11 ENSG00000064995 CDS Human protein_coding chr6:34850826 chr6:34850826 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_41235 0 0 1 0 1 TAF11 chr6:34850857 3'AG 34850857 Downstream 32bp 37934 chr18 23731852 23731852 1 + A G KIRP 23731852 + 23731832 23731872 41 TGATGCTAGAGTAGTAATAAACAGAGCCCGTGTGGAGTGCC TGATGCTAGAGTAGTAATAAGCAGAGCCCGTGTGGAGTGCC Direct Gain 0 0.926840232439381 NA NA prediction 0.853680464878762 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23731852 chr18:23731852 nonsynonymous SNV 0.979 0 21 hm7G_associated_SNPs_41236 0 0 0 0 3 PSMA8 chr18:23731804 3'AG 23731804 Downstream 49bp 37935 chr18 23731852 23731852 1 + A G KIRP 23731852 + 23731832 23731872 41 TGATGCTAGAGTAGTAATAAACAGAGCCCGTGTGGAGTGCC TGATGCTAGAGTAGTAATAAGCAGAGCCCGTGTGGAGTGCC Direct Gain 0 0.926840232439381 NA NA prediction 0.853680464878762 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23731852 chr18:23731852 nonsynonymous SNV 0.979 0 21 hm7G_associated_SNPs_41236 0 0 0 0 3 PSMA8 chr18:23731822 3'AG 23731822 Downstream 31bp 37936 chr18 23731852 23731852 1 + A G KIRP 23731852 + 23731832 23731872 41 TGATGCTAGAGTAGTAATAAACAGAGCCCGTGTGGAGTGCC TGATGCTAGAGTAGTAATAAGCAGAGCCCGTGTGGAGTGCC Direct Gain 0 0.926840232439381 NA NA prediction 0.853680464878762 Functional Gain - PSMA8 ENSG00000154611 CDS Human protein_coding chr18:23731852 chr18:23731852 nonsynonymous SNV 0.979 0 21 hm7G_associated_SNPs_41236 0 0 0 0 3 PSMA8 chr18:23731946 5'GT 23731946 Upstream 95bp 37937 chr20 44003687 44003687 1 - G C BRCA 44003687 - 44003667 44003707 41 TTGAAATGCCTATGTGGCATCCATACAAGGTGGGTGTGACA TTGAAATGCCTATGTGGCATGCATACAAGGTGGGTGTGACA Direct Gain 0 0.926837142359351 NA NA prediction 0.853674284718702 Functional Gain - TP53TG5 ENSG00000124251 CDS Human protein_coding chr20:44003687 chr20:44003687 nonsynonymous SNV 0.594 0 21 hm7G_associated_SNPs_41238 0 0 0 0 1 TP53TG5 chr20:44003679 5'GT 44003679 Upstream 9bp 37938 chr3 148596285 148596285 1 + T G LUSC 148596285 + 148596265 148596305 41 CAGTTTGATGTTAAAGAAGATATCCCAGGCAGGCACAGCTA CAGTTTGATGTTAAAGAAGAGATCCCAGGCAGGCACAGCTA Direct Gain 0 0.92678320394337 NA NA prediction 0.85356640788674 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148596285 chr3:148596285 nonsynonymous SNV 0.082 0 21 hm7G_associated_SNPs_41240 0 0 0 0 2 CPA3 chr3:148596228 3'AG 148596228 Downstream 58bp 37939 chr3 148596285 148596285 1 + T G LUSC 148596285 + 148596265 148596305 41 CAGTTTGATGTTAAAGAAGATATCCCAGGCAGGCACAGCTA CAGTTTGATGTTAAAGAAGAGATCCCAGGCAGGCACAGCTA Direct Gain 0 0.92678320394337 NA NA prediction 0.85356640788674 Functional Gain - CPA3 ENSG00000163751 CDS Human protein_coding chr3:148596285 chr3:148596285 nonsynonymous SNV 0.082 0 21 hm7G_associated_SNPs_41240 0 0 0 0 2 CPA3 chr3:148596330 5'GT 148596330 Upstream 46bp 37940 chr3 38048503 38048503 1 + C G rs140326700 38048503 + 38048483 38048523 41 GGAATTCTACAGCATGGCCACGTGGAGGCAGCGGCAGGAGA GGAATTCTACAGCATGGCCAGGTGGAGGCAGCGGCAGGAGA Direct Gain 0 0.92675917243955 NA NA prediction 0.8535183448791 Functional Gain - VILL ENSG00000136059 CDS Human protein_coding chr3:38048503 chr3:38048503 nonsynonymous SNV 0.694 1 21 hm7G_associated_SNPs_41242 0 0 0 0 1 VILL chr3:38048433 3'AG 38048433 Downstream 71bp 37941 chr17 6561192 6561192 1 + T G rs1808214 6561192 + 6561172 6561212 41 GCCCTACAGGTGGGGAAACTTGAAGGATGGGTTAATTCTGA GCCCTACAGGTGGGGAAACTGGAAGGATGGGTTAATTCTGA Direct Gain 0 0.926755546873159 NA NA prediction 0.853511093746318 Functional Gain - ALOX15P1 ENSG00000264468;ENSG00000141485 intergenic Human other chr17:6561192 chr17:6561192 . . 0 21 hm7G_associated_SNPs_41243 0 0 0 0 1 ALOX15P1 chr17:6561181 3'AG 6561181 Downstream 12bp 37942 chr12 54411166 54411166 1 + A G rs530500367 54411166 + 54411146 54411186 41 AGTGGGAGAGAGAGAGGCAGAGAGGGAGAGAGGGAGAGTGA AGTGGGAGAGAGAGAGGCAGGGAGGGAGAGAGGGAGAGTGA Direct Gain 0 0.926751071319394 NA NA prediction 0.853502142638788 Functional Gain - HOXC4;HOXC6 ENSG00000273046 ncRNA_exonic Human processed_transcript chr12:54411166 chr12:54411166 . . 0 21 hm7G_associated_SNPs_41245 0 0 1 0 1 HOXC4;HOXC6 chr12:54411198 5'GT 54411198 Upstream 33bp 37943 chr16 23693389 23693389 1 + A G UCEC 23693389 + 23693369 23693409 41 TACCTTGTGCTTACAGGTATACCTTGTTAGTGGGCAAACCA TACCTTGTGCTTACAGGTATGCCTTGTTAGTGGGCAAACCA Direct Gain 0 0.926744925841065 NA NA prediction 0.85348985168213 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23693389 chr16:23693389 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41246 0 0 1 0 2 PLK1 chr16:23693385 3'AG 23693385 Downstream 5bp 37944 chr16 23693389 23693389 1 + A G UCEC 23693389 + 23693369 23693409 41 TACCTTGTGCTTACAGGTATACCTTGTTAGTGGGCAAACCA TACCTTGTGCTTACAGGTATGCCTTGTTAGTGGGCAAACCA Direct Gain 0 0.926744925841065 NA NA prediction 0.85348985168213 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23693389 chr16:23693389 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41246 0 0 1 0 2 PLK1 chr16:23693478 5'GT 23693478 Upstream 90bp 37945 chr12 113444398 113444398 1 + A G UCEC 113444398 + 113444378 113444418 41 TCGCCTGGTGAAGCACTGGTACAAAGAGGTAAGGACAGTCT TCGCCTGGTGAAGCACTGGTGCAAAGAGGTAAGGACAGTCT Direct Gain 0 0.926711799562685 NA NA prediction 0.85342359912537 Functional Gain - OAS2 ENSG00000111335 CDS Human protein_coding chr12:113444398 chr12:113444398 nonsynonymous SNV 0.968 3 21 hm7G_associated_SNPs_41247 0 0 0 0 1 OAS2 chr12:113444405 5'GT 113444405 Upstream 8bp 37946 chr18 43702441 43702441 1 + A G SKCM 43702441 + 43702421 43702461 41 TGCTTTTTAAAGGGATGTCAAGAAAGCAGAGTTGCATCTGT TGCTTTTTAAAGGGATGTCAGGAAAGCAGAGTTGCATCTGT Direct Gain 0 0.926693034322638 NA NA prediction 0.853386068645277 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43702441 chr18:43702441 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_41249 0 0 0 0 1 HAUS1 chr18:43702433 3'AG 43702433 Downstream 9bp 37947 chrX 64949534 64949534 1 + A G UCEC 64949534 + 64949514 64949554 41 ACTTCAATAAGGAAGTGCATAAGTCTGGCTACCTGGCCGGA ACTTCAATAAGGAAGTGCATGAGTCTGGCTACCTGGCCGGA Direct Gain 0 0.926689590710123 NA NA prediction 0.853379181420245 Functional Gain - MSN ENSG00000147065 CDS Human protein_coding chrX:64949534 chrX:64949534 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_41250 0 0 1 0 1 MSN chrX:64949574 5'GT 64949574 Upstream 41bp 37948 chr6 160557309 160557309 1 + A G STAD 160557309 + 160557289 160557329 41 AAAAGAAACACTGAAGCAATAAAGATAATGGACCACATCGC AAAAGAAACACTGAAGCAATGAAGATAATGGACCACATCGC Direct Gain 0 0.926660227943954 NA NA prediction 0.853320455887908 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557309 chr6:160557309 nonsynonymous SNV 0.014 0 21 hm7G_associated_SNPs_41252 0 0 0 0 2 SLC22A1 chr6:160557252 3'AG 160557252 Downstream 58bp 37949 chr6 160557309 160557309 1 + A G STAD 160557309 + 160557289 160557329 41 AAAAGAAACACTGAAGCAATAAAGATAATGGACCACATCGC AAAAGAAACACTGAAGCAATGAAGATAATGGACCACATCGC Direct Gain 0 0.926660227943954 NA NA prediction 0.853320455887908 Functional Gain - SLC22A1 ENSG00000175003 CDS Human protein_coding chr6:160557309 chr6:160557309 nonsynonymous SNV 0.014 0 21 hm7G_associated_SNPs_41252 0 0 0 0 2 SLC22A1 chr6:160557366 5'GT 160557366 Upstream 58bp 37950 chr1 104162265 104162265 1 + C G UCEC 104162265 + 104162245 104162285 41 GCCGAATATATGAACCATCTCATTGACATTGGTGTTGCAGG GCCGAATATATGAACCATCTGATTGACATTGGTGTTGCAGG Direct Gain 0 0.926647892885659 NA NA prediction 0.853295785771318 Functional Gain - AMY2A ENSG00000243480 CDS Human protein_coding chr1:104162265 chr1:104162265 synonymous SNV . 0 21 hm7G_associated_SNPs_41253 0 0 0 0 1 AMY2A chr1:104162176 3'AG 104162176 Downstream 90bp 37951 chr6 35438014 35438014 1 + C G HNSC 35438014 + 35437994 35438034 41 ATCAAGCAGATTCCACGAATCCTCGGCCCAGGTTTAAATAA ATCAAGCAGATTCCACGAATGCTCGGCCCAGGTTTAAATAA Direct Gain 0 0.926622706952987 NA NA prediction 0.853245413905974 Functional Gain - RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438014 chr6:35438014 nonsynonymous SNV 0.989 2 21 hm7G_associated_SNPs_41254 0 0 1 0 1 RPL10A chr6:35437956 3'AG 35437956 Downstream 59bp 37952 chr16 57486724 57486724 1 + A G LIHC 57486724 + 57486704 57486744 41 TTGTCTCAGGTATACAGACCAGGGCGGCGAGGAGGAGGAGG TTGTCTCAGGTATACAGACCGGGGCGGCGAGGAGGAGGAGG Direct Gain 0 0.926613221326571 NA NA prediction 0.853226442653142 Functional Gain - COQ9 ENSG00000088682 CDS Human protein_coding chr16:57486724 chr16:57486724 nonsynonymous SNV 0.760 3 21 hm7G_associated_SNPs_41256 0 0 1 0 1 COQ9 chr16:57486713 3'AG 57486713 Downstream 12bp 37953 chr2 190339994 190339994 1 + T G UCEC 190339994 + 190339974 190340014 41 AAGAAAAAGAAAGTGAAGATTCAGATGAAGAAAATGATTTT AAGAAAAAGAAAGTGAAGATGCAGATGAAGAAAATGATTTT Direct Gain 0 0.926604474612217 NA NA prediction 0.853208949224433 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190339994 chr2:190339994 nonsynonymous SNV 0.973 3 21 hm7G_associated_SNPs_41257 0 0 1 0 1 WDR75 chr2:190339939 3'AG 190339939 Downstream 56bp 37954 chr1 26098157 26098157 1 + C G UCEC 26098157 + 26098137 26098177 41 TCCCTTCACAGACCATGTCTCAGTTGGAGGACTCGGGGACA TCCCTTCACAGACCATGTCTGAGTTGGAGGACTCGGGGACA Direct Gain 0 0.926543293026743 NA NA prediction 0.853086586053487 Functional Gain - MAN1C1 ENSG00000117643 CDS Human protein_coding chr1:26098157 chr1:26098157 stopgain 0.873 1 21 hm7G_associated_SNPs_41261 0 0 0 0 1 MAN1C1 chr1:26098148 3'AG 26098148 Downstream 10bp 37955 chr7 95726870 95726870 1 + A G LUSC 95726870 + 95726850 95726890 41 TTCGTGCTAACAGAGCTGATAGCGAGGAGGAAGGCACTGTT TTCGTGCTAACAGAGCTGATGGCGAGGAGGAAGGCACTGTT Direct Gain 0 0.926543022347815 NA NA prediction 0.853086044695629 Functional Gain - DYNC1I1 ENSG00000158560 CDS Human protein_coding chr7:95726870 chr7:95726870 nonsynonymous SNV 0.969 1 21 hm7G_associated_SNPs_41262 0 0 0 0 1 DYNC1I1 chr7:95726795 3'AG 95726795 Downstream 76bp 37956 chr12 108956418 108956418 1 + T G rs10778648 108956418 + 108956398 108956438 41 GATGGCGGCGGCTGGGGCTTTCCGTCTGAGGCGGGCGGCAT GATGGCGGCGGCTGGGGCTTGCCGTCTGAGGCGGGCGGCAT Direct Gain 0 0.926538814460072 NA NA prediction 0.853077628920144 Functional Gain - ISCU ENSG00000136003 CDS Human protein_coding chr12:108956418 chr12:108956418 nonsynonymous SNV 0.597 0 21 hm7G_associated_SNPs_41263 0 0 1 0 1 ISCU chr12:108956512 5'GT 108956512 Upstream 95bp 37957 chr7 43843382 43843382 1 + T G UCEC 43843382 + 43843362 43843402 41 TTTCTCTTGTGTCTGCCACTTTGGAAGAGCGAAAGGAAGAT TTTCTCTTGTGTCTGCCACTGTGGAAGAGCGAAAGGAAGAT Direct Gain 0 0.926531085976825 NA NA prediction 0.85306217195365 Functional Gain - BLVRA ENSG00000106605 CDS Human protein_coding chr7:43843382 chr7:43843382 nonsynonymous SNV 0.875 0 21 hm7G_associated_SNPs_41264 0 0 1 0 1 BLVRA chr7:43843446 5'GT 43843446 Upstream 65bp 37958 chr1 179013321 179013321 1 + A G rs200608685 179013321 + 179013301 179013341 41 CAGCTGAAAGCCTTACTGATACTTGAAGGAGGCCAGAAAGT CAGCTGAAAGCCTTACTGATGCTTGAAGGAGGCCAGAAAGT Direct Gain 0 0.926526766178705 NA NA prediction 0.853053532357409 Functional Gain - FAM20B ENSG00000116199 CDS Human protein_coding chr1:179013321 chr1:179013321 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_41266 0 0 1 0 1 FAM20B chr1:179013359 5'GT 179013359 Upstream 39bp 37959 chr19 56392875 56392875 1 + T G rs302456 56392875 + 56392855 56392895 41 GATGAGGAAACCCAGGCACTTCTGACGGCTGAGGAAGAGAG GATGAGGAAACCCAGGCACTGCTGACGGCTGAGGAAGAGAG Direct Gain 0 0.926493301981622 NA NA prediction 0.852986603963244 Functional Gain - NLRP4 ENSG00000160505 CDS Human protein_coding chr19:56392875 chr19:56392875 synonymous SNV . 0 21 hm7G_associated_SNPs_41270 0 0 0 0 1 NLRP4 chr19:56392836 3'AG 56392836 Downstream 40bp 37960 chr19 39208691 39208691 1 + C G LUSC 39208691 + 39208671 39208711 41 GAAGTTCCGGCAGAAGGCCTCCATCCACGAGGCCTGGACTG GAAGTTCCGGCAGAAGGCCTGCATCCACGAGGCCTGGACTG Direct Gain 0 0.926477497052366 NA NA prediction 0.852954994104731 Functional Gain - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39208691 chr19:39208691 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41271 0 0 1 0 1 ACTN4 chr19:39208714 5'GT 39208714 Upstream 24bp 37961 chr8 98703359 98703359 1 + A G STAD 98703359 + 98703339 98703379 41 AAGACACTGGAGATGCTAATACAAATGGAAAAGACTGGGGA AAGACACTGGAGATGCTAATGCAAATGGAAAAGACTGGGGA Direct Gain 0 0.926470369120817 NA NA prediction 0.852940738241635 Functional Gain - MTDH ENSG00000147649 CDS Human protein_coding chr8:98703359 chr8:98703359 nonsynonymous SNV 0.870 0 21 hm7G_associated_SNPs_41273 0 0 1 0 1 MTDH chr8:98703416 5'GT 98703416 Upstream 58bp 37962 chr11 70265929 70265929 1 + C G BLCA 70265929 + 70265909 70265949 41 GCGCCGTTGGCTTTGAGTATCAAGGCAAAACGGAGAAGCAC GCGCCGTTGGCTTTGAGTATGAAGGCAAAACGGAGAAGCAC Direct Gain 0 0.926449762783286 NA NA prediction 0.852899525566571 Functional Gain - CTTN ENSG00000085733 CDS Human protein_coding chr11:70265929 chr11:70265929 nonsynonymous SNV 0.900 3 21 hm7G_associated_SNPs_41275 0 0 1 0 2 CTTN chr11:70265852 3'AG 70265852 Downstream 78bp 37963 chr11 70265929 70265929 1 + C G BLCA 70265929 + 70265909 70265949 41 GCGCCGTTGGCTTTGAGTATCAAGGCAAAACGGAGAAGCAC GCGCCGTTGGCTTTGAGTATGAAGGCAAAACGGAGAAGCAC Direct Gain 0 0.926449762783286 NA NA prediction 0.852899525566571 Functional Gain - CTTN ENSG00000085733 CDS Human protein_coding chr11:70265929 chr11:70265929 nonsynonymous SNV 0.900 3 21 hm7G_associated_SNPs_41275 0 0 1 0 2 CTTN chr11:70265962 5'GT 70265962 Upstream 34bp 37964 chr22 24124560 24124560 1 + A G COAD 24124560 + 24124540 24124580 41 CTTCTTCCGAGGCAGGGACTACTGGCGTTTCCACCCCAGCA CTTCTTCCGAGGCAGGGACTGCTGGCGTTTCCACCCCAGCA Direct Gain 0 0.926444687364995 NA NA prediction 0.85288937472999 Functional Gain - MMP11 ENSG00000099953;ENSG00000267954 CDS Human other chr22:24124560 chr22:24124560 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41277 0 0 1 0 1 MMP11 chr22:24124555 3'AG 24124555 Downstream 6bp 37965 chr1 153330854 153330854 1 + T G STAD 153330854 + 153330834 153330874 41 GCTGGGGCACCCAGACACCCTGAACCAGGGGGAATTCAAAG GCTGGGGCACCCAGACACCCGGAACCAGGGGGAATTCAAAG Direct Gain 0 0.926434184249844 NA NA prediction 0.852868368499689 Functional Gain - S100A9 ENSG00000163220 CDS Human protein_coding chr1:153330854 chr1:153330854 nonsynonymous SNV 0.015 4 21 hm7G_associated_SNPs_41278 0 0 0 0 1 S100A9 chr1:153330909 5'GT 153330909 Upstream 56bp 37966 chr8 27401985 27401985 1 + C G BLCA 27401985 + 27401965 27402005 41 ACCGAGGTGAATCAGATCCTCATTAAGTGGCTGGATTCTGA ACCGAGGTGAATCAGATCCTGATTAAGTGGCTGGATTCTGA Direct Gain 0 0.926410840884148 NA NA prediction 0.852821681768296 Functional Gain - EPHX2 ENSG00000120915 CDS Human protein_coding chr8:27401985 chr8:27401985 synonymous SNV . 0 21 hm7G_associated_SNPs_41280 0 0 1 0 1 EPHX2 chr8:27401961 3'AG 27401961 Downstream 25bp 37967 chr5 904328 904328 1 + T G UCEC 904328 + 904308 904348 41 AGAAATTGACAATTAGACTTTCAAGCAGGTAACTTTCGGTA AGAAATTGACAATTAGACTTGCAAGCAGGTAACTTTCGGTA Direct Gain 0 0.92639316595499 NA NA prediction 0.852786331909979 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:904328 chr5:904328 nonsynonymous SNV 0.807 2 21 hm7G_associated_SNPs_41281 0 0 1 0 2 TRIP13 chr5:904263 3'AG 904263 Downstream 66bp 37968 chr5 904328 904328 1 + T G UCEC 904328 + 904308 904348 41 AGAAATTGACAATTAGACTTTCAAGCAGGTAACTTTCGGTA AGAAATTGACAATTAGACTTGCAAGCAGGTAACTTTCGGTA Direct Gain 0 0.92639316595499 NA NA prediction 0.852786331909979 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:904328 chr5:904328 nonsynonymous SNV 0.807 2 21 hm7G_associated_SNPs_41281 0 0 1 0 2 TRIP13 chr5:904335 5'GT 904335 Upstream 8bp 37969 chr10 97684091 97684091 1 + C G CESC 97684091 + 97684071 97684111 41 ATTTAGATGCAGAAGAAAATCAAAATGTAGCAAAGACATTG ATTTAGATGCAGAAGAAAATGAAAATGTAGCAAAGACATTG Direct Gain 0 0.926381270997567 NA NA prediction 0.852762541995134 Functional Gain - CC2D2B ENSG00000173088 CDS Human other chr10:97684091 chr10:97684091 nonsynonymous SNV 0.198 1 21 hm7G_associated_SNPs_41282 0 0 0 0 2 CC2D2B chr10:97684071 3'AG 97684071 Downstream 21bp 37970 chr10 97684091 97684091 1 + C G CESC 97684091 + 97684071 97684111 41 ATTTAGATGCAGAAGAAAATCAAAATGTAGCAAAGACATTG ATTTAGATGCAGAAGAAAATGAAAATGTAGCAAAGACATTG Direct Gain 0 0.926381270997567 NA NA prediction 0.852762541995134 Functional Gain - CC2D2B ENSG00000173088 CDS Human other chr10:97684091 chr10:97684091 nonsynonymous SNV 0.198 1 21 hm7G_associated_SNPs_41282 0 0 0 0 2 CC2D2B chr10:97684147 5'GT 97684147 Upstream 57bp 37971 chr13 108955864 108955864 1 + C G LUSC 108955864 + 108955844 108955884 41 CAGAGGAAGAAGGTCCATGTCTTTGGGGATGAATTGAGTCT CAGAGGAAGAAGGTCCATGTGTTTGGGGATGAATTGAGTCT Direct Gain 0 0.926368362899432 NA NA prediction 0.852736725798863 Functional Gain - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108955864 chr13:108955864 synonymous SNV . 0 21 hm7G_associated_SNPs_41283 0 0 1 0 2 TNFSF13B chr13:108955802 3'AG 108955802 Downstream 63bp 37972 chr13 108955864 108955864 1 + C G LUSC 108955864 + 108955844 108955884 41 CAGAGGAAGAAGGTCCATGTCTTTGGGGATGAATTGAGTCT CAGAGGAAGAAGGTCCATGTGTTTGGGGATGAATTGAGTCT Direct Gain 0 0.926368362899432 NA NA prediction 0.852736725798863 Functional Gain - TNFSF13B ENSG00000102524 CDS Human protein_coding chr13:108955864 chr13:108955864 synonymous SNV . 0 21 hm7G_associated_SNPs_41283 0 0 1 0 2 TNFSF13B chr13:108955952 5'GT 108955952 Upstream 89bp 37973 chr7 97361936 97361936 1 + C G rs201382322 97361936 + 97361916 97361956 41 AAATCCAACATGAAAATCCTCGTGGCCTTGGCAGTCTTTTT AAATCCAACATGAAAATCCTGGTGGCCTTGGCAGTCTTTTT Direct Gain 0 0.926363612641596 NA NA prediction 0.852727225283191 Functional Gain - TAC1 ENSG00000006128 CDS Human protein_coding chr7:97361936 chr7:97361936 synonymous SNV . 0 21 hm7G_associated_SNPs_41285 0 0 0 0 1 TAC1 chr7:97361916 3'AG 97361916 Downstream 21bp 37974 chr10 127512263 127512263 1 + A G LUAD 127512263 + 127512243 127512283 41 TGATGACAGTGACAAGGAAAAGGATGAAGAGGACGAGGTCA TGATGACAGTGACAAGGAAAGGGATGAAGAGGACGAGGTCA Direct Gain 0 0.926321280845884 NA NA prediction 0.852642561691768 Functional Gain - BCCIP ENSG00000107949 CDS Human protein_coding chr10:127512263 chr10:127512263 nonsynonymous SNV 0.019 0 21 hm7G_associated_SNPs_41287 0 0 1 0 1 BCCIP chr10:127512291 5'GT 127512291 Upstream 29bp 37975 chr1 158260981 158260981 1 + C G LUSC 158260981 + 158260961 158261001 41 CTTCTCATTTGTCAACCAATCCTGGGCACGAGGTCAGGGCT CTTCTCATTTGTCAACCAATGCTGGGCACGAGGTCAGGGCT Direct Gain 0 0.926316744674479 NA NA prediction 0.852633489348959 Functional Gain - CD1C ENSG00000158481 CDS Human protein_coding chr1:158260981 chr1:158260981 nonsynonymous SNV 0.043 2 21 hm7G_associated_SNPs_41288 0 0 0 0 1 CD1C chr1:158260924 3'AG 158260924 Downstream 58bp 37976 chr5 135388753 135388753 1 + C G BRCA 135388753 + 135388733 135388773 41 ATCATCTCCAATAAAGACATCCTAGCCACCAACGGGGTGAT ATCATCTCCAATAAAGACATGCTAGCCACCAACGGGGTGAT Direct Gain 0 0.926308465921813 NA NA prediction 0.852616931843627 Functional Gain - TGFBI ENSG00000120708 CDS Human protein_coding chr5:135388753 chr5:135388753 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_41289 0 0 1 0 1 TGFBI chr5:135388808 5'GT 135388808 Upstream 56bp 37977 chr7 65554649 65554649 1 + C G GBM 65554649 + 65554629 65554669 41 GACACTATGAGTGCCGTGCTCCAGGTGGCCACTGGCGTCAT GACACTATGAGTGCCGTGCTGCAGGTGGCCACTGGCGTCAT Direct Gain 0 0.926255517123239 NA NA prediction 0.852511034246479 Functional Gain - ASL ENSG00000126522;ENSG00000249319 CDS Human other chr7:65554649 chr7:65554649 synonymous SNV . 0 21 hm7G_associated_SNPs_41292 0 0 1 0 1 ASL chr7:65554599 3'AG 65554599 Downstream 51bp 37978 chr3 132394705 132394705 1 + T G UCEC 132394705 + 132394685 132394725 41 CAGAAGAGGAACTGAAAAATTTTTCAGGTCCAGTTCCAGAC CAGAAGAGGAACTGAAAAATGTTTCAGGTCCAGTTCCAGAC Direct Gain 0 0.926255360226151 NA NA prediction 0.852510720452301 Functional Gain - UBA5 ENSG00000081307 CDS Human protein_coding chr3:132394705 chr3:132394705 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41293 0 0 1 0 2 UBA5 chr3:132394661 3'AG 132394661 Downstream 45bp 37979 chr3 132394705 132394705 1 + T G UCEC 132394705 + 132394685 132394725 41 CAGAAGAGGAACTGAAAAATTTTTCAGGTCCAGTTCCAGAC CAGAAGAGGAACTGAAAAATGTTTCAGGTCCAGTTCCAGAC Direct Gain 0 0.926255360226151 NA NA prediction 0.852510720452301 Functional Gain - UBA5 ENSG00000081307 CDS Human protein_coding chr3:132394705 chr3:132394705 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41293 0 0 1 0 2 UBA5 chr3:132394767 5'GT 132394767 Upstream 63bp 37980 chr16 56864576 56864576 1 + A G UCEC 56864576 + 56864556 56864596 41 TAAAACCTGGTTCCAGGAGTACATGAACAGCAAGGACAGAA TAAAACCTGGTTCCAGGAGTGCATGAACAGCAAGGACAGAA Direct Gain 0 0.926251087198932 NA NA prediction 0.852502174397865 Functional Gain - NUP93 ENSG00000102900 CDS Human protein_coding chr16:56864576 chr16:56864576 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41295 0 0 1 0 1 NUP93 chr16:56864597 5'GT 56864597 Upstream 22bp 37981 chr14 100706186 100706186 1 + A G rs371252181 100706186 + 100706166 100706206 41 CGGCGGCGCCGACCCGGGCAACAAGAAGTGGGAGCAGAAGC CGGCGGCGCCGACCCGGGCAGCAAGAAGTGGGAGCAGAAGC Direct Gain 0 0.926244344081725 NA NA prediction 0.85248868816345 Functional Gain - YY1 ENSG00000100811 CDS Human protein_coding chr14:100706186 chr14:100706186 nonsynonymous SNV 0.984 0 21 hm7G_associated_SNPs_41296 0 0 1 0 1 YY1 chr14:100706260 5'GT 100706260 Upstream 75bp 37982 chr7 107216881 107216881 1 + A G STAD 107216881 + 107216861 107216901 41 CAACAGGAGTTTCATGGATTACAGTCCATGGAAGAACTGCT CAACAGGAGTTTCATGGATTGCAGTCCATGGAAGAACTGCT Direct Gain 0 0.926236294570051 NA NA prediction 0.852472589140103 Functional Gain - DUS4L ENSG00000105865 CDS Human protein_coding chr7:107216881 chr7:107216881 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41298 0 0 0 0 2 DUS4L chr7:107216811 3'AG 107216811 Downstream 71bp 37983 chr7 107216881 107216881 1 + A G STAD 107216881 + 107216861 107216901 41 CAACAGGAGTTTCATGGATTACAGTCCATGGAAGAACTGCT CAACAGGAGTTTCATGGATTGCAGTCCATGGAAGAACTGCT Direct Gain 0 0.926236294570051 NA NA prediction 0.852472589140103 Functional Gain - DUS4L ENSG00000105865 CDS Human protein_coding chr7:107216881 chr7:107216881 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41298 0 0 0 0 2 DUS4L chr7:107216854 3'AG 107216854 Downstream 28bp 37984 chr5 176295177 176295177 1 + C G rs145214251 176295177 + 176295157 176295197 41 AATGTCTCAAGGCAGCAGGTCGAGAAGGTGTTCGGGCTGGA AATGTCTCAAGGCAGCAGGTGGAGAAGGTGTTCGGGCTGGA Direct Gain 0 0.926222937461142 NA NA prediction 0.852445874922284 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295177 chr5:176295177 synonymous SNV . 0 21 hm7G_associated_SNPs_41300 0 0 0 0 2 UNC5A chr5:176295131 3'AG 176295131 Downstream 47bp 37985 chr5 176295177 176295177 1 + C G rs145214251 176295177 + 176295157 176295197 41 AATGTCTCAAGGCAGCAGGTCGAGAAGGTGTTCGGGCTGGA AATGTCTCAAGGCAGCAGGTGGAGAAGGTGTTCGGGCTGGA Direct Gain 0 0.926222937461142 NA NA prediction 0.852445874922284 Functional Gain - UNC5A ENSG00000113763 CDS Human protein_coding chr5:176295177 chr5:176295177 synonymous SNV . 0 21 hm7G_associated_SNPs_41300 0 0 0 0 2 UNC5A chr5:176295274 5'GT 176295274 Upstream 98bp 37986 chr1 90473286 90473286 1 + A G PRAD 90473286 + 90473266 90473306 41 ATGCTTTTGGAGGACCATCAACAGGCAGAGGCCGAGGCCGA ATGCTTTTGGAGGACCATCAGCAGGCAGAGGCCGAGGCCGA Direct Gain 0 0.926214379731335 NA NA prediction 0.85242875946267 Functional Gain - ZNF326 ENSG00000162664 CDS Human protein_coding chr1:90473286 chr1:90473286 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41301 0 0 1 0 1 ZNF326 chr1:90473309 5'GT 90473309 Upstream 24bp 37987 chr19 49425651 49425651 1 + C G rs35750589 49425651 + 49425631 49425671 41 AAGAAACTTCTCGAGCGGCTCCCTGAGGTTGAGGTGCCCCA AAGAAACTTCTCGAGCGGCTGCCTGAGGTTGAGGTGCCCCA Direct Gain 0 0.926189961325144 NA NA prediction 0.852379922650289 Functional Gain - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49425651 chr19:49425651 synonymous SNV . 0 21 hm7G_associated_SNPs_41302 0 0 1 0 1 NUCB1 chr19:49425575 3'AG 49425575 Downstream 77bp 37988 chr11 33054274 33054274 1 + T G UCEC 33054274 + 33054254 33054294 41 CTATTGTTGACAATAAAAATTTATCCAAAGGCAAAACAGAT CTATTGTTGACAATAAAAATGTATCCAAAGGCAAAACAGAT Direct Gain 0 0.926165310840601 NA NA prediction 0.852330621681202 Functional Gain - DEPDC7 ENSG00000121690 CDS Human protein_coding chr11:33054274 chr11:33054274 nonsynonymous SNV 0.993 1 21 hm7G_associated_SNPs_41303 0 0 0 0 1 DEPDC7 chr11:33054339 5'GT 33054339 Upstream 66bp 37989 chr13 31543082 31543082 1 + A G LUSC 31543082 + 31543062 31543102 41 CACAAAGAAACAGACCACATACCAAAGTGACTACGACAAAA CACAAAGAAACAGACCACATGCCAAAGTGACTACGACAAAA Direct Gain 0 0.926156988100855 NA NA prediction 0.85231397620171 Functional Gain - TEX26 ENSG00000175664 CDS Human protein_coding chr13:31543082 chr13:31543082 nonsynonymous SNV 0.015 4 21 hm7G_associated_SNPs_41305 0 0 0 0 1 TEX26 chr13:31543022 3'AG 31543022 Downstream 61bp 37990 chr1 158261887 158261887 1 + A G STAD 158261887 + 158261867 158261907 41 CCTCCAGATCCCTTTGAAGTACAGGTGAAAGCGGGCTGTGA CCTCCAGATCCCTTTGAAGTGCAGGTGAAAGCGGGCTGTGA Direct Gain 0 0.92608994604099 NA NA prediction 0.85217989208198 Functional Gain - CD1C ENSG00000158481 CDS Human protein_coding chr1:158261887 chr1:158261887 synonymous SNV . 0 21 hm7G_associated_SNPs_41306 0 0 0 0 1 CD1C chr1:158261874 3'AG 158261874 Downstream 14bp 37991 chr1 8025453 8025453 1 + C G PRAD 8025453 + 8025433 8025473 41 GCCGTGATGTGGTCATTTGTCCTGATGCCAGCCTTGAAGAT GCCGTGATGTGGTCATTTGTGCTGATGCCAGCCTTGAAGAT Direct Gain 0 0.926066609491939 NA NA prediction 0.852133218983879 Functional Gain - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8025453 chr1:8025453 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41309 0 0 1 0 2 PARK7 chr1:8025384 3'AG 8025384 Downstream 70bp 37992 chr1 8025453 8025453 1 + C G PRAD 8025453 + 8025433 8025473 41 GCCGTGATGTGGTCATTTGTCCTGATGCCAGCCTTGAAGAT GCCGTGATGTGGTCATTTGTGCTGATGCCAGCCTTGAAGAT Direct Gain 0 0.926066609491939 NA NA prediction 0.852133218983879 Functional Gain - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8025453 chr1:8025453 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41309 0 0 1 0 2 PARK7 chr1:8025485 5'GT 8025485 Upstream 33bp 37993 chr5 128440953 128440953 1 + C G LUSC 128440953 + 128440933 128440973 41 AAGGTCTTGGGAGCACGGTTCAAGAAATTGATTTAACAGGT AAGGTCTTGGGAGCACGGTTGAAGAAATTGATTTAACAGGT Direct Gain 0 0.926065630585636 NA NA prediction 0.852131261171272 Functional Gain - ISOC1 ENSG00000066583 CDS Human protein_coding chr5:128440953 chr5:128440953 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41311 0 0 1 0 1 ISOC1 chr5:128440878 3'AG 128440878 Downstream 76bp 37994 chr7 30651771 30651771 1 + T G STAD 30651771 + 30651751 30651791 41 TTTCAAACGACTTTTGGAGTTCAACCAAGGAAAGTTGCCTT TTTCAAACGACTTTTGGAGTGCAACCAAGGAAAGTTGCCTT Direct Gain 0 0.926059686913501 NA NA prediction 0.852119373827003 Functional Gain - GARS ENSG00000106105 CDS Human protein_coding chr7:30651771 chr7:30651771 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41312 0 0 1 0 2 GARS chr7:30651712 3'AG 30651712 Downstream 60bp 37995 chr7 30651771 30651771 1 + T G STAD 30651771 + 30651751 30651791 41 TTTCAAACGACTTTTGGAGTTCAACCAAGGAAAGTTGCCTT TTTCAAACGACTTTTGGAGTGCAACCAAGGAAAGTTGCCTT Direct Gain 0 0.926059686913501 NA NA prediction 0.852119373827003 Functional Gain - GARS ENSG00000106105 CDS Human protein_coding chr7:30651771 chr7:30651771 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41312 0 0 1 0 2 GARS chr7:30651861 5'GT 30651861 Upstream 91bp 37996 chr17 7840087 7840087 1 + T G UCEC 7840087 + 7840067 7840107 41 ACAGAGGTTCTCAGGGGACTTCAAGAGGAACACCAGGCAGC ACAGAGGTTCTCAGGGGACTGCAAGAGGAACACCAGGCAGC Direct Gain 0 0.926035239120194 NA NA prediction 0.852070478240387 Functional Gain - CNTROB ENSG00000170037 CDS Human protein_coding chr17:7840087 chr17:7840087 synonymous SNV . 0 21 hm7G_associated_SNPs_41313 0 0 1 0 2 CNTROB chr17:7840019 3'AG 7840019 Downstream 69bp 37997 chr17 7840087 7840087 1 + T G UCEC 7840087 + 7840067 7840107 41 ACAGAGGTTCTCAGGGGACTTCAAGAGGAACACCAGGCAGC ACAGAGGTTCTCAGGGGACTGCAAGAGGAACACCAGGCAGC Direct Gain 0 0.926035239120194 NA NA prediction 0.852070478240387 Functional Gain - CNTROB ENSG00000170037 CDS Human protein_coding chr17:7840087 chr17:7840087 synonymous SNV . 0 21 hm7G_associated_SNPs_41313 0 0 1 0 2 CNTROB chr17:7840135 5'GT 7840135 Upstream 49bp 37998 chr1 40537148 40537148 1 + C G BLCA 40537148 + 40537128 40537168 41 TTCCCAGTTCCTGAGCAGTTCAAGACCCTATGGAACGGGCA TTCCCAGTTCCTGAGCAGTTGAAGACCCTATGGAACGGGCA Direct Gain 0 0.926006039972176 NA NA prediction 0.852012079944351 Functional Gain - CAP1 ENSG00000131236 CDS Human protein_coding chr1:40537148 chr1:40537148 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41316 0 0 1 0 1 CAP1 chr1:40537122 3'AG 40537122 Downstream 27bp 37999 chr19 57883181 57883181 1 + A G LUAD 57883181 + 57883161 57883201 41 TTTTGAAGACGTGGCCATATATTTCTCCCAGGAGGAGTGGG TTTTGAAGACGTGGCCATATGTTTCTCCCAGGAGGAGTGGG Direct Gain 0 0.925998831181047 NA NA prediction 0.851997662362094 Functional Gain - ZNF547 ENSG00000152433;ENSG00000268133 CDS Human other chr19:57883181 chr19:57883181 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_41317 0 0 1 0 1 ZNF547 chr19:57883276 5'GT 57883276 Upstream 96bp 38000 chr17 66040454 66040454 1 + A G rs147841208 66040454 + 66040434 66040474 41 TAGGCAGATTTTAAGACACAAAAGGAAGCTGTGTGGGCCGT TAGGCAGATTTTAAGACACAGAAGGAAGCTGTGTGGGCCGT Direct Gain 0 0.92599789642642 NA NA prediction 0.85199579285284 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66040454 chr17:66040454 synonymous SNV . 0 21 hm7G_associated_SNPs_41318 0 0 1 0 1 KPNA2 chr17:66040437 3'AG 66040437 Downstream 18bp 38001 chr8 38840539 38840539 1 + A G LUSC 38840539 + 38840519 38840559 41 GTTCTGGGGTTTATGTATGTAAAGTGGTTGAAGGAACAGCT GTTCTGGGGTTTATGTATGTGAAGTGGTTGAAGGAACAGCT Direct Gain 0 0.925978453132537 NA NA prediction 0.851956906265075 Functional Gain - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38840539 chr8:38840539 nonsynonymous SNV 0.901 0 21 hm7G_associated_SNPs_41321 0 0 0 0 2 HTRA4 chr8:38840472 3'AG 38840472 Downstream 68bp 38002 chr8 38840539 38840539 1 + A G LUSC 38840539 + 38840519 38840559 41 GTTCTGGGGTTTATGTATGTAAAGTGGTTGAAGGAACAGCT GTTCTGGGGTTTATGTATGTGAAGTGGTTGAAGGAACAGCT Direct Gain 0 0.925978453132537 NA NA prediction 0.851956906265075 Functional Gain - HTRA4 ENSG00000169495 CDS Human protein_coding chr8:38840539 chr8:38840539 nonsynonymous SNV 0.901 0 21 hm7G_associated_SNPs_41321 0 0 0 0 2 HTRA4 chr8:38840567 5'GT 38840567 Upstream 29bp 38003 chr17 37826086 37826086 1 + A G UCEC 37826086 + 37826066 37826106 41 TGCCTGCCTCATTGAGGGCAAGGGGTAAGGACTGGGGGGTG TGCCTGCCTCATTGAGGGCAGGGGGTAAGGACTGGGGGGTG Direct Gain 0 0.925970785509634 NA NA prediction 0.851941571019268 Functional Gain - PNMT ENSG00000141744 CDS Human protein_coding chr17:37826086 chr17:37826086 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41322 0 0 0 0 1 PNMT chr17:37826089 5'GT 37826089 Upstream 4bp 38004 chr1 198262109 198262109 1 + A G UCEC 198262109 + 198262089 198262129 41 TACATGTCTCCAGAGAGAATACATGAAAATGGATACAACTT TACATGTCTCCAGAGAGAATGCATGAAAATGGATACAACTT Direct Gain 0 0.925923365789079 NA NA prediction 0.851846731578157 Functional Gain - NEK7 ENSG00000151414 CDS Human protein_coding chr1:198262109 chr1:198262109 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41325 0 0 1 0 2 NEK7 chr1:198262075 3'AG 198262075 Downstream 35bp 38005 chr1 198262109 198262109 1 + A G UCEC 198262109 + 198262089 198262129 41 TACATGTCTCCAGAGAGAATACATGAAAATGGATACAACTT TACATGTCTCCAGAGAGAATGCATGAAAATGGATACAACTT Direct Gain 0 0.925923365789079 NA NA prediction 0.851846731578157 Functional Gain - NEK7 ENSG00000151414 CDS Human protein_coding chr1:198262109 chr1:198262109 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41325 0 0 1 0 2 NEK7 chr1:198262169 5'GT 198262169 Upstream 61bp 38006 chr2 178988562 178988562 1 + A G rs576495190 178988562 + 178988542 178988582 41 TTATTTTTTCCAGTCTCCTTAGAAAAATGGCAACACAGATG TTATTTTTTCCAGTCTCCTTGGAAAAATGGCAACACAGATG Direct Gain 0 0.925922530757149 NA NA prediction 0.851845061514299 Functional Gain - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178988562 chr2:178988562 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41327 0 0 1 0 2 RBM45 chr2:178988555 3'AG 178988555 Downstream 8bp 38007 chr2 178988562 178988562 1 + A G rs576495190 178988562 + 178988542 178988582 41 TTATTTTTTCCAGTCTCCTTAGAAAAATGGCAACACAGATG TTATTTTTTCCAGTCTCCTTGGAAAAATGGCAACACAGATG Direct Gain 0 0.925922530757149 NA NA prediction 0.851845061514299 Functional Gain - RBM45 ENSG00000155636 CDS Human protein_coding chr2:178988562 chr2:178988562 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41327 0 0 1 0 2 RBM45 chr2:178988639 5'GT 178988639 Upstream 78bp 38008 chr7 127236487 127236487 1 + A G HNSC 127236487 + 127236467 127236507 41 GCTTCGTTCAGCCAATGGCTACTACCTATCCCAGGTGAGAC GCTTCGTTCAGCCAATGGCTGCTACCTATCCCAGGTGAGAC Direct Gain 0 0.925919609481358 NA NA prediction 0.851839218962717 Functional Gain - FSCN3 ENSG00000106328 CDS Human protein_coding chr7:127236487 chr7:127236487 nonsynonymous SNV 0.958 0 21 hm7G_associated_SNPs_41328 0 0 0 0 1 FSCN3 chr7:127236500 5'GT 127236500 Upstream 14bp 38009 chr6 138726399 138726399 1 + C G LUAD 138726399 + 138726379 138726419 41 CGAAACTGAACAGCTACATTCAAGGCAAAAACGAGAAAGGT CGAAACTGAACAGCTACATTGAAGGCAAAAACGAGAAAGGT Direct Gain 0 0.925909550812525 NA NA prediction 0.85181910162505 Functional Gain - HEBP2 ENSG00000051620 CDS Human protein_coding chr6:138726399 chr6:138726399 nonsynonymous SNV 0.718 0 21 hm7G_associated_SNPs_41329 0 0 1 0 1 HEBP2 chr6:138726417 5'GT 138726417 Upstream 19bp 38010 chr11 18434300 18434300 1 + A G LUAD 18434300 + 18434280 18434320 41 GAGCAGCTAATTGAGAAGCTAATTGAGGATGATGAAAACTC GAGCAGCTAATTGAGAAGCTGATTGAGGATGATGAAAACTC Direct Gain 0 0.925907950705136 NA NA prediction 0.851815901410271 Functional Gain - LDHC ENSG00000166796 CDS Human protein_coding chr11:18434300 chr11:18434300 synonymous SNV . 0 21 hm7G_associated_SNPs_41330 0 0 0 0 1 LDHC chr11:18434390 5'GT 18434390 Upstream 91bp 38011 chr2 223386557 223386557 1 + A G rs3739000 223386557 + 223386537 223386577 41 CCCTCCTCCCCTCCAGTTGTAAAACTGGAAAAGAGACTGAT CCCTCCTCCCCTCCAGTTGTGAAACTGGAAAAGAGACTGAT Direct Gain 0 0.925879297323272 NA NA prediction 0.851758594646545 Functional Gain - SGPP2 ENSG00000163082 CDS Human protein_coding chr2:223386557 chr2:223386557 synonymous SNV . 0 21 hm7G_associated_SNPs_41332 0 0 1 0 1 SGPP2 chr2:223386486 3'AG 223386486 Downstream 72bp 38012 chr2 37586907 37586907 1 + A G rs115355165 37586907 + 37586887 37586927 41 GTATTTTTCCCACTGGAACAACAGAGTGTTTGTAGGAGCCA GTATTTTTCCCACTGGAACAGCAGAGTGTTTGTAGGAGCCA Direct Gain 0 0.925863677458429 NA NA prediction 0.851727354916858 Functional Gain - QPCT ENSG00000115828 CDS Human protein_coding chr2:37586907 chr2:37586907 nonsynonymous SNV 0.968 0 21 hm7G_associated_SNPs_41333 0 0 1 0 1 QPCT chr2:37587001 5'GT 37587001 Upstream 95bp 38013 chr1 166816793 166816793 1 + T G UCEC 166816793 + 166816773 166816813 41 GGGAGGAGGAGTCTCAGAATTCTGACGAGTGGCAGCTCCAA GGGAGGAGGAGTCTCAGAATGCTGACGAGTGGCAGCTCCAA Direct Gain 0 0.925863417303181 NA NA prediction 0.851726834606362 Functional Gain - POGK ENSG00000143157 CDS Human protein_coding chr1:166816793 chr1:166816793 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41334 0 0 1 0 2 POGK chr1:166816731 3'AG 166816731 Downstream 63bp 38014 chr1 166816793 166816793 1 + T G UCEC 166816793 + 166816773 166816813 41 GGGAGGAGGAGTCTCAGAATTCTGACGAGTGGCAGCTCCAA GGGAGGAGGAGTCTCAGAATGCTGACGAGTGGCAGCTCCAA Direct Gain 0 0.925863417303181 NA NA prediction 0.851726834606362 Functional Gain - POGK ENSG00000143157 CDS Human protein_coding chr1:166816793 chr1:166816793 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41334 0 0 1 0 2 POGK chr1:166816829 5'GT 166816829 Upstream 37bp 38015 chr12 112585930 112585930 1 + C G CESC 112585930 + 112585910 112585950 41 ACTCAATACTGGCAGCTCTTCCCCCAGAGGGGTGGAGGAAC ACTCAATACTGGCAGCTCTTGCCCCAGAGGGGTGGAGGAAC Direct Gain 0 0.925859792200326 NA NA prediction 0.851719584400652 Functional Gain - TRAFD1 ENSG00000135148 CDS Human protein_coding chr12:112585930 chr12:112585930 nonsynonymous SNV 0.955 2 21 hm7G_associated_SNPs_41335 0 0 1 2 1 TRAFD1 chr12:112585878 3'AG 112585878 Downstream 53bp 38016 chr17 635964 635964 1 + C G rs143771876 635964 + 635944 635984 41 CACCTGGGCGCTGCGCCGCTCCCAGCCCGGATGGAGCCGCA CACCTGGGCGCTGCGCCGCTGCCAGCCCGGATGGAGCCGCA Direct Gain 0 0.925845076871861 NA NA prediction 0.851690153743722 Functional Gain - FAM57A ENSG00000167695 CDS Human protein_coding chr17:635964 chr17:635964 nonsynonymous SNV 0.016 0 21 hm7G_associated_SNPs_41336 0 0 1 0 1 FAM57A chr17:636009 5'GT 636009 Upstream 46bp 38017 chr2 119750786 119750786 1 + T G SKCM 119750786 + 119750766 119750806 41 GTGGTACCTGGGGGACAATTTGCGATGACGAGTGGCAAAAT GTGGTACCTGGGGGACAATTGGCGATGACGAGTGGCAAAAT Direct Gain 0 0.925830630459399 NA NA prediction 0.851661260918797 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119750786 chr2:119750786 nonsynonymous SNV 0.874 4 21 hm7G_associated_SNPs_41338 0 0 0 0 2 MARCO chr2:119750700 3'AG 119750700 Downstream 87bp 38018 chr2 119750786 119750786 1 + T G SKCM 119750786 + 119750766 119750806 41 GTGGTACCTGGGGGACAATTTGCGATGACGAGTGGCAAAAT GTGGTACCTGGGGGACAATTGGCGATGACGAGTGGCAAAAT Direct Gain 0 0.925830630459399 NA NA prediction 0.851661260918797 Functional Gain - MARCO ENSG00000019169 CDS Human protein_coding chr2:119750786 chr2:119750786 nonsynonymous SNV 0.874 4 21 hm7G_associated_SNPs_41338 0 0 0 0 2 MARCO chr2:119750876 5'GT 119750876 Upstream 91bp 38019 chr19 38894028 38894028 1 + T G UCEC 38894028 + 38894008 38894048 41 GGGCGCCTCATGCCCAGACTTCAGGGGGCTGTGCGTGCGGC GGGCGCCTCATGCCCAGACTGCAGGGGGCTGTGCGTGCGGC Direct Gain 0 0.925810901353223 NA NA prediction 0.851621802706445 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38894028 chr19:38894028 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_41339 0 0 1 0 2 FAM98C chr19:38893978 3'AG 38893978 Downstream 51bp 38020 chr19 38894028 38894028 1 + T G UCEC 38894028 + 38894008 38894048 41 GGGCGCCTCATGCCCAGACTTCAGGGGGCTGTGCGTGCGGC GGGCGCCTCATGCCCAGACTGCAGGGGGCTGTGCGTGCGGC Direct Gain 0 0.925810901353223 NA NA prediction 0.851621802706445 Functional Gain - FAM98C ENSG00000130244 CDS Human protein_coding chr19:38894028 chr19:38894028 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_41339 0 0 1 0 2 FAM98C chr19:38894126 5'GT 38894126 Upstream 99bp 38021 chr11 810251 810251 1 + C G rs145622642 810251 + 810231 810271 41 CAGGATGCGCTACGTCGCCTCCTACCTGCTGGCTGCCCTAG CAGGATGCGCTACGTCGCCTGCTACCTGCTGGCTGCCCTAG Direct Gain 0 0.925808696179427 NA NA prediction 0.851617392358853 Functional Gain - RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810251 chr11:810251 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41340 0 0 1 0 1 RPLP2 chr11:810234 3'AG 810234 Downstream 18bp 38022 chr4 187005865 187005865 1 + C G rs73873710 187005865 + 187005845 187005885 41 GATTCCATTATATTGGTTTTCCTTGAGGAGATTCCAGATTA GATTCCATTATATTGGTTTTGCTTGAGGAGATTCCAGATTA Direct Gain 0 0.925806357651267 NA NA prediction 0.851612715302534 Functional Gain - TLR3 ENSG00000164342 CDS Human protein_coding chr4:187005865 chr4:187005865 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_41341 0 0 1 0 1 TLR3 chr4:187005799 3'AG 187005799 Downstream 67bp 38023 chr5 151183450 151183450 1 + T G MESO 151183450 + 151183430 151183470 41 ACCTTGATTCTTACAGCCCATCATGTTCAGAGGTGAGGTCC ACCTTGATTCTTACAGCCCAGCATGTTCAGAGGTGAGGTCC Direct Gain 0 0.925804006877067 NA NA prediction 0.851608013754134 Functional Gain - G3BP1 ENSG00000145907 CDS Human protein_coding chr5:151183450 chr5:151183450 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_41342 0 0 1 0 1 G3BP1 chr5:151183446 3'AG 151183446 Downstream 5bp 38024 chr11 85961421 85961421 1 + A G rs182106684 85961421 + 85961401 85961441 41 CCAAATGCACCTGGAAGGAAAAGTTGGGGAAAGGGAAAATG CCAAATGCACCTGGAAGGAAGAGTTGGGGAAAGGGAAAATG Direct Gain 0 0.925791899495169 NA NA prediction 0.851583798990337 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85961421 chr11:85961421 synonymous SNV . 0 21 hm7G_associated_SNPs_41343 0 0 1 0 2 EED chr11:85961338 3'AG 85961338 Downstream 84bp 38025 chr11 85961421 85961421 1 + A G rs182106684 85961421 + 85961401 85961441 41 CCAAATGCACCTGGAAGGAAAAGTTGGGGAAAGGGAAAATG CCAAATGCACCTGGAAGGAAGAGTTGGGGAAAGGGAAAATG Direct Gain 0 0.925791899495169 NA NA prediction 0.851583798990337 Functional Gain - EED ENSG00000074266 CDS Human protein_coding chr11:85961421 chr11:85961421 synonymous SNV . 0 21 hm7G_associated_SNPs_41343 0 0 1 0 2 EED chr11:85961490 5'GT 85961490 Upstream 70bp 38026 chrX 135584992 135584992 1 + A G UCEC 135584992 + 135584972 135585012 41 TGAAGATGAAATTAGAGGCTACAAATTACATGTTGAGGTGG TGAAGATGAAATTAGAGGCTGCAAATTACATGTTGAGGTGG Direct Gain 0 0.92578318792476 NA NA prediction 0.85156637584952 Functional Gain - HTATSF1 ENSG00000102241 CDS Human protein_coding chrX:135584992 chrX:135584992 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41344 0 0 1 0 1 HTATSF1 chrX:135584937 3'AG 135584937 Downstream 56bp 38027 chr1 158913588 158913588 1 + A G UCEC 158913588 + 158913568 158913608 41 TTTTTGTTGCAGAAAATTGTAAATAGGAAGACGACAATCTA TTTTTGTTGCAGAAAATTGTGAATAGGAAGACGACAATCTA Direct Gain 0 0.925776146183155 NA NA prediction 0.851552292366311 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158913588 chr1:158913588 synonymous SNV . 0 21 hm7G_associated_SNPs_41345 0 0 0 0 1 PYHIN1 chr1:158913580 3'AG 158913580 Downstream 9bp 38028 chr11 34492549 34492549 1 + C G BLCA 34492549 + 34492529 34492569 41 CCTGACTACGGGAGCCACATCCAGGCTCTTCTGGACAAGTA CCTGACTACGGGAGCCACATGCAGGCTCTTCTGGACAAGTA Direct Gain 0 0.925756662822192 NA NA prediction 0.851513325644384 Functional Gain - CAT ENSG00000121691 CDS Human protein_coding chr11:34492549 chr11:34492549 nonsynonymous SNV 0.033 2 21 hm7G_associated_SNPs_41346 0 0 1 0 2 CAT chr11:34492505 3'AG 34492505 Downstream 45bp 38029 chr11 34492549 34492549 1 + C G BLCA 34492549 + 34492529 34492569 41 CCTGACTACGGGAGCCACATCCAGGCTCTTCTGGACAAGTA CCTGACTACGGGAGCCACATGCAGGCTCTTCTGGACAAGTA Direct Gain 0 0.925756662822192 NA NA prediction 0.851513325644384 Functional Gain - CAT ENSG00000121691 CDS Human protein_coding chr11:34492549 chr11:34492549 nonsynonymous SNV 0.033 2 21 hm7G_associated_SNPs_41346 0 0 1 0 2 CAT chr11:34492588 5'GT 34492588 Upstream 40bp 38030 chr3 46944090 46944090 1 + A G STAD 46944090 + 46944070 46944110 41 TGTCTTCATGGCCACACCATACACCGAGGTCTCAGGGACGC TGTCTTCATGGCCACACCATGCACCGAGGTCTCAGGGACGC Direct Gain 0 0.925750627567371 NA NA prediction 0.851501255134742 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46944090 chr3:46944090 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_41347 0 0 0 0 2 PTH1R chr3:46944016 3'AG 46944016 Downstream 75bp 38031 chr3 46944090 46944090 1 + A G STAD 46944090 + 46944070 46944110 41 TGTCTTCATGGCCACACCATACACCGAGGTCTCAGGGACGC TGTCTTCATGGCCACACCATGCACCGAGGTCTCAGGGACGC Direct Gain 0 0.925750627567371 NA NA prediction 0.851501255134742 Functional Gain - PTH1R ENSG00000160801 CDS Human protein_coding chr3:46944090 chr3:46944090 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_41347 0 0 0 0 2 PTH1R chr3:46944157 5'GT 46944157 Upstream 68bp 38032 chr3 14174093 14174093 1 + A G STAD 14174093 + 14174073 14174113 41 GAAGGAGACGAGGTATTCCTACAGTGAGTGCTGGGCCCCTT GAAGGAGACGAGGTATTCCTGCAGTGAGTGCTGGGCCCCTT Direct Gain 0 0.925739050489715 NA NA prediction 0.85147810097943 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14174093 chr3:14174093 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41349 0 0 1 0 2 TMEM43 chr3:14174046 3'AG 14174046 Downstream 48bp 38033 chr3 14174093 14174093 1 + A G STAD 14174093 + 14174073 14174113 41 GAAGGAGACGAGGTATTCCTACAGTGAGTGCTGGGCCCCTT GAAGGAGACGAGGTATTCCTGCAGTGAGTGCTGGGCCCCTT Direct Gain 0 0.925739050489715 NA NA prediction 0.85147810097943 Functional Gain - TMEM43 ENSG00000170876 CDS Human protein_coding chr3:14174093 chr3:14174093 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41349 0 0 1 0 2 TMEM43 chr3:14174095 5'GT 14174095 Upstream 3bp 38034 chr1 43124576 43124576 1 + T G UCEC 43124576 + 43124556 43124596 41 GCCTAAGACGGCCGAGAACTTTAGGTAAGGACGTGCTCCAG GCCTAAGACGGCCGAGAACTGTAGGTAAGGACGTGCTCCAG Direct Gain 0 0.925679205292124 NA NA prediction 0.851358410584249 Functional Gain - PPIH ENSG00000171960 CDS Human protein_coding chr1:43124576 chr1:43124576 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41352 0 0 1 0 2 PPIH chr1:43124515 3'AG 43124515 Downstream 62bp 38035 chr1 43124576 43124576 1 + T G UCEC 43124576 + 43124556 43124596 41 GCCTAAGACGGCCGAGAACTTTAGGTAAGGACGTGCTCCAG GCCTAAGACGGCCGAGAACTGTAGGTAAGGACGTGCTCCAG Direct Gain 0 0.925679205292124 NA NA prediction 0.851358410584249 Functional Gain - PPIH ENSG00000171960 CDS Human protein_coding chr1:43124576 chr1:43124576 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41352 0 0 1 0 2 PPIH chr1:43124579 5'GT 43124579 Upstream 4bp 38036 chr1 62914153 62914153 1 + A G rs151062149 62914153 + 62914133 62914173 41 TAGTTTCTCCAGAGCCAAAAACAGAAATGAAGACCCTGAGA TAGTTTCTCCAGAGCCAAAAGCAGAAATGAAGACCCTGAGA Direct Gain 0 0.925638728955686 NA NA prediction 0.851277457911373 Functional Gain - USP1 ENSG00000162607 CDS Human protein_coding chr1:62914153 chr1:62914153 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41353 0 0 1 0 1 USP1 chr1:62914136 3'AG 62914136 Downstream 18bp 38037 chr19 17534379 17534379 1 + C G LUAD 17534379 + 17534359 17534399 41 GTGCCCAAGCCCCGAGGTCTCAGCCGGGACATGCAGGGCCT GTGCCCAAGCCCCGAGGTCTGAGCCGGGACATGCAGGGCCT Direct Gain 0 0.925635216143691 NA NA prediction 0.851270432287383 Functional Gain - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534379 chr19:17534379 stopgain 0.898 0 21 hm7G_associated_SNPs_41354 0 0 0 0 2 MVB12A chr19:17534307 3'AG 17534307 Downstream 73bp 38038 chr19 17534379 17534379 1 + C G LUAD 17534379 + 17534359 17534399 41 GTGCCCAAGCCCCGAGGTCTCAGCCGGGACATGCAGGGCCT GTGCCCAAGCCCCGAGGTCTGAGCCGGGACATGCAGGGCCT Direct Gain 0 0.925635216143691 NA NA prediction 0.851270432287383 Functional Gain - MVB12A ENSG00000141971 CDS Human protein_coding chr19:17534379 chr19:17534379 stopgain 0.898 0 21 hm7G_associated_SNPs_41354 0 0 0 0 2 MVB12A chr19:17534426 5'GT 17534426 Upstream 48bp 38039 chr11 60615460 60615460 1 + A G UCEC 60615460 + 60615440 60615480 41 CAGCGGAAGATGAAGGAACGACAGGAGAGGAAGCTGGCCAA CAGCGGAAGATGAAGGAACGGCAGGAGAGGAAGCTGGCCAA Direct Gain 0 0.925625390594862 NA NA prediction 0.851250781189723 Functional Gain - CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60615460 chr11:60615460 synonymous SNV . 0 21 hm7G_associated_SNPs_41355 0 0 1 0 2 CCDC86 chr11:60615397 3'AG 60615397 Downstream 64bp 38040 chr11 60615460 60615460 1 + A G UCEC 60615460 + 60615440 60615480 41 CAGCGGAAGATGAAGGAACGACAGGAGAGGAAGCTGGCCAA CAGCGGAAGATGAAGGAACGGCAGGAGAGGAAGCTGGCCAA Direct Gain 0 0.925625390594862 NA NA prediction 0.851250781189723 Functional Gain - CCDC86 ENSG00000110104 CDS Human protein_coding chr11:60615460 chr11:60615460 synonymous SNV . 0 21 hm7G_associated_SNPs_41355 0 0 1 0 2 CCDC86 chr11:60615526 5'GT 60615526 Upstream 67bp 38041 chr10 54053631 54053631 1 - G C HNSC 54053631 - 54053611 54053651 41 TATATCCCATCCTGAGTTGTCATCAGGTGGTGGTTCATCGT TATATCCCATCCTGAGTTGTGATCAGGTGGTGGTTCATCGT Direct Gain 0 0.925624356802326 NA NA prediction 0.851248713604651 Functional Gain - PRKG1 ENSG00000185532 CDS Human antisense chr10:54053631 chr10:54053631 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41356 0 0 0 0 1 PRKG1 chr10:54053727 3'AG 54053727 Downstream 97bp 38042 chr12 69753758 69753758 1 + C G READ 69753758 + 69753738 69753778 41 CTTCCGTGGGACAATATGTTCAAGAGAATGGCCGAATTTGG CTTCCGTGGGACAATATGTTGAAGAGAATGGCCGAATTTGG Direct Gain 0 0.925608368400687 NA NA prediction 0.851216736801375 Functional Gain - YEATS4 ENSG00000127337 CDS Human protein_coding chr12:69753758 chr12:69753758 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41357 0 0 1 0 1 YEATS4 chr12:69753803 5'GT 69753803 Upstream 46bp 38043 chr2 105716142 105716142 1 + A G SKCM 105716142 + 105716122 105716162 41 CTGCAGCTGGACTACTTACTACTGATCCACGTGTGAGGGAA CTGCAGCTGGACTACTTACTGCTGATCCACGTGTGAGGGAA Direct Gain 0 0.92558103049673 NA NA prediction 0.85116206099346 Functional Gain - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105716142 chr2:105716142 nonsynonymous SNV 0.000 0 21 hm7G_associated_SNPs_41359 0 0 1 0 1 MRPS9 chr2:105716128 3'AG 105716128 Downstream 15bp 38044 chr13 43174920 43174920 1 + C G rs189501562 43174920 + 43174900 43174940 41 ATCGTTGGATCACAGCACATCAGAGCAGAGAAAGGTAAGCA ATCGTTGGATCACAGCACATGAGAGCAGAGAAAGGTAAGCA Direct Gain 0 0.925576255524679 NA NA prediction 0.851152511049358 Functional Gain - TNFSF11 ENSG00000120659 CDS Human protein_coding chr13:43174920 chr13:43174920 nonsynonymous SNV 0.007 1 21 hm7G_associated_SNPs_41360 0 0 0 0 2 TNFSF11 chr13:43174888 3'AG 43174888 Downstream 33bp 38045 chr13 43174920 43174920 1 + C G rs189501562 43174920 + 43174900 43174940 41 ATCGTTGGATCACAGCACATCAGAGCAGAGAAAGGTAAGCA ATCGTTGGATCACAGCACATGAGAGCAGAGAAAGGTAAGCA Direct Gain 0 0.925576255524679 NA NA prediction 0.851152511049358 Functional Gain - TNFSF11 ENSG00000120659 CDS Human protein_coding chr13:43174920 chr13:43174920 nonsynonymous SNV 0.007 1 21 hm7G_associated_SNPs_41360 0 0 0 0 2 TNFSF11 chr13:43174933 5'GT 43174933 Upstream 14bp 38046 chr4 71064329 71064329 1 + C G OV 71064329 + 71064309 71064349 41 TATTCTCCTTCAAAATGCCTCAAGAGCAAGGACAGGTAAAT TATTCTCCTTCAAAATGCCTGAAGAGCAAGGACAGGTAAAT Direct Gain 0 0.925576000312792 NA NA prediction 0.851152000625583 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71064329 chr4:71064329 nonsynonymous SNV 0.966 2 21 hm7G_associated_SNPs_41361 0 0 1 0 2 ODAM chr4:71064296 3'AG 71064296 Downstream 34bp 38047 chr4 71064329 71064329 1 + C G OV 71064329 + 71064309 71064349 41 TATTCTCCTTCAAAATGCCTCAAGAGCAAGGACAGGTAAAT TATTCTCCTTCAAAATGCCTGAAGAGCAAGGACAGGTAAAT Direct Gain 0 0.925576000312792 NA NA prediction 0.851152000625583 Functional Gain - ODAM ENSG00000109205 CDS Human protein_coding chr4:71064329 chr4:71064329 nonsynonymous SNV 0.966 2 21 hm7G_associated_SNPs_41361 0 0 1 0 2 ODAM chr4:71064343 5'GT 71064343 Upstream 15bp 38048 chr14 94640889 94640889 1 + C G LUSC 94640889 + 94640869 94640909 41 GACCTGCAGGAGCTCACCATCATCGAGAGGCCGGTCCGCCG GACCTGCAGGAGCTCACCATGATCGAGAGGCCGGTCCGCCG Direct Gain 0 0.925567443688576 NA NA prediction 0.851134887377152 Functional Gain - PPP4R4 ENSG00000119698 CDS Human protein_coding chr14:94640889 chr14:94640889 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41362 0 0 0 0 1 PPP4R4 chr14:94640919 5'GT 94640919 Upstream 31bp 38049 chr9 103340782 103340782 1 + C G BLCA 103340782 + 103340762 103340802 41 CATGTTAAAAAAGTTGAAGTCAAGCAAGAGGAAATAATGAA CATGTTAAAAAAGTTGAAGTGAAGCAAGAGGAAATAATGAA Direct Gain 0 0.925555611580022 NA NA prediction 0.851111223160045 Functional Gain - CAVIN4 ENSG00000170681 CDS Human protein_coding chr9:103340782 chr9:103340782 synonymous SNV . 0 21 hm7G_associated_SNPs_41364 0 0 0 0 1 CAVIN4 chr9:103340833 5'GT 103340833 Upstream 52bp 38050 chr9 139974553 139974553 1 + A G LUAD 139974553 + 139974533 139974573 41 CCGCTAAAACCGAACGGGATAAAGATGGAGAAGTTTGTGTT CCGCTAAAACCGAACGGGATGAAGATGGAGAAGTTTGTGTT Direct Gain 0 0.925551907893921 NA NA prediction 0.851103815787841 Functional Gain - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139974553 chr9:139974553 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41365 0 0 0 0 2 UAP1L1 chr9:139974454 3'AG 139974454 Downstream 100bp 38051 chr9 139974553 139974553 1 + A G LUAD 139974553 + 139974533 139974573 41 CCGCTAAAACCGAACGGGATAAAGATGGAGAAGTTTGTGTT CCGCTAAAACCGAACGGGATGAAGATGGAGAAGTTTGTGTT Direct Gain 0 0.925551907893921 NA NA prediction 0.851103815787841 Functional Gain - UAP1L1 ENSG00000197355 CDS Human protein_coding chr9:139974553 chr9:139974553 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41365 0 0 0 0 2 UAP1L1 chr9:139974594 5'GT 139974594 Upstream 42bp 38052 chr2 242695290 242695290 1 + C G BLCA 242695290 + 242695270 242695310 41 TGGGCCCTGAGGGAAAGGATCACAGAGGCGCTGAGCCGGGA TGGGCCCTGAGGGAAAGGATGACAGAGGCGCTGAGCCGGGA Direct Gain 0 0.925549014063604 NA NA prediction 0.851098028127208 Functional Gain - D2HGDH ENSG00000180902 CDS Human protein_coding chr2:242695290 chr2:242695290 nonsynonymous SNV 0.304 5 21 hm7G_associated_SNPs_41366 0 0 1 0 1 D2HGDH chr2:242695264 3'AG 242695264 Downstream 27bp 38053 chr9 108484855 108484855 1 + A G rs113133534 108484855 + 108484835 108484875 41 ACGAATTTTGAGAGGTTGGTAAAAGGAGATTGGAAACCAGA ACGAATTTTGAGAGGTTGGTGAAAGGAGATTGGAAACCAGA Direct Gain 0 0.925546700923471 NA NA prediction 0.851093401846942 Functional Gain - TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108484855 chr9:108484855 synonymous SNV . 0 21 hm7G_associated_SNPs_41367 0 0 1 0 2 TMEM38B chr9:108484815 3'AG 108484815 Downstream 41bp 38054 chr9 108484855 108484855 1 + A G rs113133534 108484855 + 108484835 108484875 41 ACGAATTTTGAGAGGTTGGTAAAAGGAGATTGGAAACCAGA ACGAATTTTGAGAGGTTGGTGAAAGGAGATTGGAAACCAGA Direct Gain 0 0.925546700923471 NA NA prediction 0.851093401846942 Functional Gain - TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108484855 chr9:108484855 synonymous SNV . 0 21 hm7G_associated_SNPs_41367 0 0 1 0 2 TMEM38B chr9:108484902 5'GT 108484902 Upstream 48bp 38055 chr5 167933825 167933825 1 + A G COAD 167933825 + 167933805 167933845 41 GCTGGATTTGGTGTGGTGCTAGGGGAAGACAAGTAAGTCTG GCTGGATTTGGTGTGGTGCTGGGGGAAGACAAGTAAGTCTG Direct Gain 0 0.925442731542601 NA NA prediction 0.850885463085202 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167933825 chr5:167933825 synonymous SNV . 0 21 hm7G_associated_SNPs_41368 0 0 1 0 2 RARS chr5:167933727 3'AG 167933727 Downstream 99bp 38056 chr5 167933825 167933825 1 + A G COAD 167933825 + 167933805 167933845 41 GCTGGATTTGGTGTGGTGCTAGGGGAAGACAAGTAAGTCTG GCTGGATTTGGTGTGGTGCTGGGGGAAGACAAGTAAGTCTG Direct Gain 0 0.925442731542601 NA NA prediction 0.850885463085202 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167933825 chr5:167933825 synonymous SNV . 0 21 hm7G_associated_SNPs_41368 0 0 1 0 2 RARS chr5:167933836 5'GT 167933836 Upstream 12bp 38057 chr12 81112162 81112162 1 + C G BLCA 81112162 + 81112142 81112182 41 ATGTAACAGTCCTGTCTGGTCCAGAAAGAGCAGTACTTTTG ATGTAACAGTCCTGTCTGGTGCAGAAAGAGCAGTACTTTTG Direct Gain 0 0.925418407360077 NA NA prediction 0.850836814720154 Functional Gain - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112162 chr12:81112162 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41372 0 0 0 0 2 MYF5 chr12:81112137 3'AG 81112137 Downstream 26bp 38058 chr12 81112162 81112162 1 + C G BLCA 81112162 + 81112142 81112182 41 ATGTAACAGTCCTGTCTGGTCCAGAAAGAGCAGTACTTTTG ATGTAACAGTCCTGTCTGGTGCAGAAAGAGCAGTACTTTTG Direct Gain 0 0.925418407360077 NA NA prediction 0.850836814720154 Functional Gain - MYF5 ENSG00000111049 CDS Human protein_coding chr12:81112162 chr12:81112162 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41372 0 0 0 0 2 MYF5 chr12:81112212 5'GT 81112212 Upstream 51bp 38059 chr7 56062641 56062641 1 + C G LUAD 56062641 + 56062621 56062661 41 GAAGCCGTCGGAGGATTCTTCTCTCAGATTGGGCAGCTGTA GAAGCCGTCGGAGGATTCTTGTCTCAGATTGGGCAGCTGTA Direct Gain 0 0.925411139782331 NA NA prediction 0.850822279564663 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56062641 chr7:56062641 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41373 0 0 1 0 2 NIPSNAP2 chr7:56062587 3'AG 56062587 Downstream 55bp 38060 chr7 56062641 56062641 1 + C G LUAD 56062641 + 56062621 56062661 41 GAAGCCGTCGGAGGATTCTTCTCTCAGATTGGGCAGCTGTA GAAGCCGTCGGAGGATTCTTGTCTCAGATTGGGCAGCTGTA Direct Gain 0 0.925411139782331 NA NA prediction 0.850822279564663 Functional Gain - NIPSNAP2 ENSG00000146729 CDS Human protein_coding chr7:56062641 chr7:56062641 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41373 0 0 1 0 2 NIPSNAP2 chr7:56062681 5'GT 56062681 Upstream 41bp 38061 chr3 52842633 52842633 1 + A G UCEC 52842633 + 52842613 52842653 41 GGTTGTCTGCTGGTTCGTCCACAACAACGGAGAAGGGCTGA GGTTGTCTGCTGGTTCGTCCGCAACAACGGAGAAGGGCTGA Direct Gain 0 0.925358188238723 NA NA prediction 0.850716376477446 Functional Gain - ITIH3 ENSG00000162267 CDS Human protein_coding chr3:52842633 chr3:52842633 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_41374 0 0 1 0 1 ITIH3 chr3:52842568 3'AG 52842568 Downstream 66bp 38062 chr9 34990767 34990767 1 + T G BRCA 34990767 + 34990747 34990787 41 TAAAATTCAGCTGGAGCCCTTAAAACTTCGAGCGTGGACGC TAAAATTCAGCTGGAGCCCTGAAAACTTCGAGCGTGGACGC Direct Gain 0 0.925320586436713 NA NA prediction 0.850641172873425 Functional Gain - DNAJB5 ENSG00000137094 CDS Human protein_coding chr9:34990767 chr9:34990767 stopgain 1.000 0 21 hm7G_associated_SNPs_41375 0 0 0 0 1 DNAJB5 chr9:34990809 5'GT 34990809 Upstream 43bp 38063 chr12 54675202 54675202 1 + C G HNSC 54675202 + 54675182 54675222 41 CCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTT CCCGAACAGCTGAGGAAGCTGTTCATTGGAGGGTTGAGCTT Direct Gain 0 0.925313675744722 NA NA prediction 0.850627351489444 Functional Gain - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675202 chr12:54675202 synonymous SNV . 0 21 hm7G_associated_SNPs_41376 0 0 0 0 2 HNRNPA1 chr12:54675170 3'AG 54675170 Downstream 33bp 38064 chr12 54675202 54675202 1 + C G HNSC 54675202 + 54675182 54675222 41 CCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTT CCCGAACAGCTGAGGAAGCTGTTCATTGGAGGGTTGAGCTT Direct Gain 0 0.925313675744722 NA NA prediction 0.850627351489444 Functional Gain - HNRNPA1 ENSG00000135486 CDS Human protein_coding chr12:54675202 chr12:54675202 synonymous SNV . 0 21 hm7G_associated_SNPs_41376 0 0 0 0 2 HNRNPA1 chr12:54675286 5'GT 54675286 Upstream 85bp 38065 chr8 145094856 145094856 1 + C G rs60729674 145094856 + 145094836 145094876 41 GTGGCAAACGAACGAGTCCTCGAAGAAGTGGGGATCATGGC GTGGCAAACGAACGAGTCCTGGAAGAAGTGGGGATCATGGC Direct Gain 0 0.925267618651601 NA NA prediction 0.850535237303202 Functional Gain - SPATC1 ENSG00000186583 CDS Human protein_coding chr8:145094856 chr8:145094856 synonymous SNV . 0 21 hm7G_associated_SNPs_41381 0 0 0 0 1 SPATC1 chr8:145094810 3'AG 145094810 Downstream 47bp 38066 chr11 5719736 5719736 1 + C G LGG 5719736 + 5719716 5719756 41 AGCACGCTCATCTCAGATCTCCAGCGGAGGTTGAGGGGATC AGCACGCTCATCTCAGATCTGCAGCGGAGGTTGAGGGGATC Direct Gain 0 0.925212373314599 NA NA prediction 0.850424746629197 Functional Gain - TRIM22 ENSG00000132274 CDS Human protein_coding chr11:5719736 chr11:5719736 synonymous SNV . 0 21 hm7G_associated_SNPs_41382 0 0 0 0 1 TRIM22 chr11:5719775 5'GT 5719775 Upstream 40bp 38067 chr17 38458232 38458232 1 + C G STAD 38458232 + 38458212 38458252 41 AAAGCTTTAATTGGAAATATCTTAGCTACTGGATTGCCTTA AAAGCTTTAATTGGAAATATGTTAGCTACTGGATTGCCTTA Direct Gain 0 0.925188326732848 NA NA prediction 0.850376653465695 Functional Gain - CDC6 ENSG00000094804 CDS Human protein_coding chr17:38458232 chr17:38458232 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41383 0 0 1 0 1 CDC6 chr17:38458164 3'AG 38458164 Downstream 69bp 38068 chr11 93127816 93127816 1 + A G COAD 93127816 + 93127796 93127836 41 AAAGAAAAAATGTTAGCAAAACAAAAGGTATGCAAGCAGGC AAAGAAAAAATGTTAGCAAAGCAAAAGGTATGCAAGCAGGC Direct Gain 0 0.92517673267738 NA NA prediction 0.85035346535476 Functional Gain - DEUP1 ENSG00000165325 CDS Human protein_coding chr11:93127816 chr11:93127816 synonymous SNV . 0 21 hm7G_associated_SNPs_41385 0 0 0 0 1 DEUP1 chr11:93127822 5'GT 93127822 Upstream 7bp 38069 chr17 66033533 66033533 1 + C G UCEC 66033533 + 66033513 66033553 41 AGGAAAGCTAAGAAGGATGACCAGATGCTGAAGAGGAGAAA AGGAAAGCTAAGAAGGATGAGCAGATGCTGAAGAGGAGAAA Direct Gain 0 0.925171847743694 NA NA prediction 0.850343695487388 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033533 chr17:66033533 nonsynonymous SNV 0.895 0 21 hm7G_associated_SNPs_41386 0 0 1 0 2 KPNA2 chr17:66033474 3'AG 66033474 Downstream 60bp 38070 chr17 66033533 66033533 1 + C G UCEC 66033533 + 66033513 66033553 41 AGGAAAGCTAAGAAGGATGACCAGATGCTGAAGAGGAGAAA AGGAAAGCTAAGAAGGATGAGCAGATGCTGAAGAGGAGAAA Direct Gain 0 0.925171847743694 NA NA prediction 0.850343695487388 Functional Gain - KPNA2 ENSG00000182481 CDS Human protein_coding chr17:66033533 chr17:66033533 nonsynonymous SNV 0.895 0 21 hm7G_associated_SNPs_41386 0 0 1 0 2 KPNA2 chr17:66033611 5'GT 66033611 Upstream 79bp 38071 chr3 42982774 42982774 1 + C G HNSC 42982774 + 42982754 42982794 41 ACTACGAAGGAATGGGCCATCATGGTGCCTGCCGAGAGGGC ACTACGAAGGAATGGGCCATGATGGTGCCTGCCGAGAGGGC Direct Gain 0 0.925171436705304 NA NA prediction 0.850342873410609 Functional Gain - KRBOX1 ENSG00000240747;ENSG00000273291 CDS Human other chr3:42982774 chr3:42982774 nonsynonymous SNV 0.071 2 21 hm7G_associated_SNPs_41387 0 0 0 0 2 KRBOX1 chr3:42982718 3'AG 42982718 Downstream 57bp 38072 chr3 42982774 42982774 1 + C G HNSC 42982774 + 42982754 42982794 41 ACTACGAAGGAATGGGCCATCATGGTGCCTGCCGAGAGGGC ACTACGAAGGAATGGGCCATGATGGTGCCTGCCGAGAGGGC Direct Gain 0 0.925171436705304 NA NA prediction 0.850342873410609 Functional Gain - KRBOX1 ENSG00000240747;ENSG00000273291 CDS Human other chr3:42982774 chr3:42982774 nonsynonymous SNV 0.071 2 21 hm7G_associated_SNPs_41387 0 0 0 0 2 KRBOX1 chr3:42982844 5'GT 42982844 Upstream 71bp 38073 chr3 184023708 184023708 1 + C G HNSC 184023708 + 184023688 184023728 41 CTTCCTCTTGGACTGGGTCTCAACCACCTGGGTGAGGGGAT CTTCCTCTTGGACTGGGTCTGAACCACCTGGGTGAGGGGAT Direct Gain 0 0.925109539200001 NA NA prediction 0.850219078400003 Functional Gain - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184023708 chr3:184023708 synonymous SNV . 0 21 hm7G_associated_SNPs_41391 0 0 1 0 1 PSMD2 chr3:184023718 5'GT 184023718 Upstream 11bp 38074 chr14 20824535 20824535 1 + T G READ 20824535 + 20824515 20824555 41 ATACCATGACCTTGCTGGATTTGTTTGAAGTGGAGAAGGAT ATACCATGACCTTGCTGGATGTGTTTGAAGTGGAGAAGGAT Direct Gain 0 0.925090891849867 NA NA prediction 0.850181783699733 Functional Gain - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20824535 chr14:20824535 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_41395 0 0 1 0 2 PARP2 chr14:20824466 3'AG 20824466 Downstream 70bp 38075 chr14 20824535 20824535 1 + T G READ 20824535 + 20824515 20824555 41 ATACCATGACCTTGCTGGATTTGTTTGAAGTGGAGAAGGAT ATACCATGACCTTGCTGGATGTGTTTGAAGTGGAGAAGGAT Direct Gain 0 0.925090891849867 NA NA prediction 0.850181783699733 Functional Gain - PARP2 ENSG00000129484 CDS Human protein_coding chr14:20824535 chr14:20824535 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_41395 0 0 1 0 2 PARP2 chr14:20824593 5'GT 20824593 Upstream 59bp 38076 chr17 17948515 17948515 1 + A G UCEC 17948515 + 17948495 17948535 41 ACTTGAAGATTAAAGGCCTTACTGAGGTAAGCACTTGCTCA ACTTGAAGATTAAAGGCCTTGCTGAGGTAAGCACTTGCTCA Direct Gain 0 0.925060318162863 NA NA prediction 0.850120636325725 Functional Gain - GID4 ENSG00000141034 CDS Human protein_coding chr17:17948515 chr17:17948515 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41399 0 0 0 0 2 GID4 chr17:17948461 3'AG 17948461 Downstream 55bp 38077 chr17 17948515 17948515 1 + A G UCEC 17948515 + 17948495 17948535 41 ACTTGAAGATTAAAGGCCTTACTGAGGTAAGCACTTGCTCA ACTTGAAGATTAAAGGCCTTGCTGAGGTAAGCACTTGCTCA Direct Gain 0 0.925060318162863 NA NA prediction 0.850120636325725 Functional Gain - GID4 ENSG00000141034 CDS Human protein_coding chr17:17948515 chr17:17948515 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41399 0 0 0 0 2 GID4 chr17:17948520 5'GT 17948520 Upstream 6bp 38078 chr9 17747077 17747077 1 + A G LUSC 17747077 + 17747057 17747097 41 TCTACAGAAAGTGAGTGAGAAGGTTGGAGGAGCTGAAGGAA TCTACAGAAAGTGAGTGAGAGGGTTGGAGGAGCTGAAGGAA Direct Gain 0 0.925055232653487 NA NA prediction 0.850110465306973 Functional Gain - SH3GL2 ENSG00000107295 CDS Human protein_coding chr9:17747077 chr9:17747077 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41400 0 0 0 0 1 SH3GL2 chr9:17747064 3'AG 17747064 Downstream 14bp 38079 chr19 49547432 49547432 1 + A G LIHC 49547432 + 49547412 49547452 41 CCCCCACAACCCCGAGGTATAAAGCCAGGTACACGAGGCAG CCCCCACAACCCCGAGGTATGAAGCCAGGTACACGAGGCAG Direct Gain 0 0.925046827679733 NA NA prediction 0.850093655359467 Functional Gain - CGB5 ENSG00000189052 UTR5 Human protein_coding chr19:49547432 chr19:49547432 . . 0 21 hm7G_associated_SNPs_41402 0 0 0 0 1 CGB5 chr19:49547481 5'GT 49547481 Upstream 50bp 38080 chr1 220964850 220964850 1 + A G SKCM 220964850 + 220964830 220964870 41 CAGGTTTTGGCTTGTGATCAACCAGGAGGGAAACATGGTTA CAGGTTTTGGCTTGTGATCAGCCAGGAGGGAAACATGGTTA Direct Gain 0 0.925013573873677 NA NA prediction 0.850027147747355 Functional Gain - MARC1 ENSG00000186205 CDS Human protein_coding chr1:220964850 chr1:220964850 nonsynonymous SNV 0.686 1 21 hm7G_associated_SNPs_41405 0 0 1 0 1 MARC1 chr1:220964833 3'AG 220964833 Downstream 18bp 38081 chr2 101098755 101098755 1 + A G LUAD 101098755 + 101098735 101098775 41 TCAGCCCAGGAATGGAAGAAACATTGAAGATGAGGCCCAGT TCAGCCCAGGAATGGAAGAAGCATTGAAGATGAGGCCCAGT Direct Gain 0 0.925002731559955 NA NA prediction 0.85000546311991 Functional Gain - NMS ENSG00000204640 CDS Human protein_coding chr2:101098755 chr2:101098755 nonsynonymous SNV 0.805 0 21 hm7G_associated_SNPs_41406 0 0 0 0 2 NMS chr2:101098739 3'AG 101098739 Downstream 17bp 38082 chr2 101098755 101098755 1 + A G LUAD 101098755 + 101098735 101098775 41 TCAGCCCAGGAATGGAAGAAACATTGAAGATGAGGCCCAGT TCAGCCCAGGAATGGAAGAAGCATTGAAGATGAGGCCCAGT Direct Gain 0 0.925002731559955 NA NA prediction 0.85000546311991 Functional Gain - NMS ENSG00000204640 CDS Human protein_coding chr2:101098755 chr2:101098755 nonsynonymous SNV 0.805 0 21 hm7G_associated_SNPs_41406 0 0 0 0 2 NMS chr2:101098773 5'GT 101098773 Upstream 19bp 38083 chr16 28838251 28838251 1 + C G ESCA 28838251 + 28838231 28838271 41 AACACAAAGAGAAGGTGCTTCAGCGCTGGGAGGGGGGTGAC AACACAAAGAGAAGGTGCTTGAGCGCTGGGAGGGGGGTGAC Direct Gain 0 0.924994376946003 NA NA prediction 0.849988753892006 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28838251 chr16:28838251 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41407 0 0 1 0 2 ATXN2L chr16:28838183 3'AG 28838183 Downstream 69bp 38084 chr16 28838251 28838251 1 + C G ESCA 28838251 + 28838231 28838271 41 AACACAAAGAGAAGGTGCTTCAGCGCTGGGAGGGGGGTGAC AACACAAAGAGAAGGTGCTTGAGCGCTGGGAGGGGGGTGAC Direct Gain 0 0.924994376946003 NA NA prediction 0.849988753892006 Functional Gain - ATXN2L ENSG00000168488 CDS Human protein_coding chr16:28838251 chr16:28838251 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41407 0 0 1 0 2 ATXN2L chr16:28838307 5'GT 28838307 Upstream 57bp 38085 chr5 125960330 125960330 1 + A G COAD 125960330 + 125960310 125960350 41 AAGCTGCTAGGAAGAGGAGAACACAAGTGTTGGGGAAAAAG AAGCTGCTAGGAAGAGGAGAGCACAAGTGTTGGGGAAAAAG Direct Gain 0 0.924991064653438 NA NA prediction 0.849982129306875 Functional Gain - PHAX ENSG00000164902 CDS Human protein_coding chr5:125960330 chr5:125960330 nonsynonymous SNV 0.993 0 21 hm7G_associated_SNPs_41408 0 0 1 0 1 PHAX chr5:125960267 3'AG 125960267 Downstream 64bp 38086 chr6 150094297 150094297 1 + C G BLCA 150094297 + 150094277 150094317 41 TCCAAGCAACAATCAGTGCTCCACACATGGTAAGTTAAGTT TCCAAGCAACAATCAGTGCTGCACACATGGTAAGTTAAGTT Direct Gain 0 0.924971321819612 NA NA prediction 0.849942643639225 Functional Gain - PCMT1 ENSG00000120265 CDS Human protein_coding chr6:150094297 chr6:150094297 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41409 0 0 1 0 2 PCMT1 chr6:150094274 3'AG 150094274 Downstream 24bp 38087 chr6 150094297 150094297 1 + C G BLCA 150094297 + 150094277 150094317 41 TCCAAGCAACAATCAGTGCTCCACACATGGTAAGTTAAGTT TCCAAGCAACAATCAGTGCTGCACACATGGTAAGTTAAGTT Direct Gain 0 0.924971321819612 NA NA prediction 0.849942643639225 Functional Gain - PCMT1 ENSG00000120265 CDS Human protein_coding chr6:150094297 chr6:150094297 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41409 0 0 1 0 2 PCMT1 chr6:150094305 5'GT 150094305 Upstream 9bp 38088 chr11 71821647 71821647 1 - G C LUSC 71821647 - 71821627 71821667 41 CTGTGCCTTTGCCCACAGCTCCAAAGCATCGCGGAGAAAGA CTGTGCCTTTGCCCACAGCTGCAAAGCATCGCGGAGAAAGA Direct Gain 0 0.924948801607916 NA NA prediction 0.849897603215833 Functional Gain - ANAPC15 ENSG00000110200 CDS Human protein_coding chr11:71821647 chr11:71821647 synonymous SNV . 0 21 hm7G_associated_SNPs_41410 0 0 0 0 2 ANAPC15 chr11:71821590 5'GT 71821590 Upstream 58bp 38089 chr11 71821647 71821647 1 - G C LUSC 71821647 - 71821627 71821667 41 CTGTGCCTTTGCCCACAGCTCCAAAGCATCGCGGAGAAAGA CTGTGCCTTTGCCCACAGCTGCAAAGCATCGCGGAGAAAGA Direct Gain 0 0.924948801607916 NA NA prediction 0.849897603215833 Functional Gain - ANAPC15 ENSG00000110200 CDS Human protein_coding chr11:71821647 chr11:71821647 synonymous SNV . 0 21 hm7G_associated_SNPs_41410 0 0 0 0 2 ANAPC15 chr11:71821649 3'AG 71821649 Downstream 3bp 38090 chr2 198365932 198365932 1 + A G rs148530634 198365932 + 198365912 198365952 41 AAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTC AAAGTATTGCAAGCAACAGTGGTCGCTGTTGGATCGGGTTC Direct Gain 0 0.924944737473081 NA NA prediction 0.849889474946162 Functional Gain - HSPE1;HSPE1-MOB4 ENSG00000115541;ENSG00000270757 CDS Human other chr2:198365932 chr2:198365932 synonymous SNV . 0 21 hm7G_associated_SNPs_41411 0 0 1 0 1 HSPE1;HSPE1-MOB4 chr2:198365962 5'GT 198365962 Upstream 31bp 38091 chr14 74551687 74551687 1 + C G LUAD 74551687 + 74551667 74551707 41 TGGGTTGGAAGATGGCGTCTCCCACAGACGGTAAGAGCCGG TGGGTTGGAAGATGGCGTCTGCCACAGACGGTAAGAGCCGG Direct Gain 0 0.924926465179021 NA NA prediction 0.849852930358042 Functional Gain - LIN52 ENSG00000205659 CDS Human protein_coding chr14:74551687 chr14:74551687 nonsynonymous SNV 0.981 1 21 hm7G_associated_SNPs_41412 0 0 1 0 1 LIN52 chr14:74551696 5'GT 74551696 Upstream 10bp 38092 chr17 7840088 7840088 1 + C G BLCA 7840088 + 7840068 7840108 41 CAGAGGTTCTCAGGGGACTTCAAGAGGAACACCAGGCAGCA CAGAGGTTCTCAGGGGACTTGAAGAGGAACACCAGGCAGCA Direct Gain 0 0.924923548511252 NA NA prediction 0.849847097022505 Functional Gain - CNTROB ENSG00000170037 CDS Human protein_coding chr17:7840088 chr17:7840088 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41414 0 0 1 0 2 CNTROB chr17:7840019 3'AG 7840019 Downstream 70bp 38093 chr17 7840088 7840088 1 + C G BLCA 7840088 + 7840068 7840108 41 CAGAGGTTCTCAGGGGACTTCAAGAGGAACACCAGGCAGCA CAGAGGTTCTCAGGGGACTTGAAGAGGAACACCAGGCAGCA Direct Gain 0 0.924923548511252 NA NA prediction 0.849847097022505 Functional Gain - CNTROB ENSG00000170037 CDS Human protein_coding chr17:7840088 chr17:7840088 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41414 0 0 1 0 2 CNTROB chr17:7840135 5'GT 7840135 Upstream 48bp 38094 chr20 62505104 62505104 1 + C G LUAD 62505104 + 62505084 62505124 41 CTCAAGAGGAGGCTGGGCCTCTCCACCCTGGGGGAGCTGAA CTCAAGAGGAGGCTGGGCCTGTCCACCCTGGGGGAGCTGAA Direct Gain 0 0.924905460661623 NA NA prediction 0.849810921323245 Functional Gain - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505104 chr20:62505104 synonymous SNV . 0 21 hm7G_associated_SNPs_41415 0 0 1 0 2 TPD52L2 chr20:62505021 3'AG 62505021 Downstream 84bp 38095 chr20 62505104 62505104 1 + C G LUAD 62505104 + 62505084 62505124 41 CTCAAGAGGAGGCTGGGCCTCTCCACCCTGGGGGAGCTGAA CTCAAGAGGAGGCTGGGCCTGTCCACCCTGGGGGAGCTGAA Direct Gain 0 0.924905460661623 NA NA prediction 0.849810921323245 Functional Gain - TPD52L2 ENSG00000101150 CDS Human protein_coding chr20:62505104 chr20:62505104 synonymous SNV . 0 21 hm7G_associated_SNPs_41415 0 0 1 0 2 TPD52L2 chr20:62505169 5'GT 62505169 Upstream 66bp 38096 chr22 44323028 44323028 1 + C G SKCM 44323028 + 44323008 44323048 41 TCTGGTGTCTGACTTTCGGTCCAAAGACGAAGTCGTGGATG TCTGGTGTCTGACTTTCGGTGCAAAGACGAAGTCGTGGATG Direct Gain 0 0.924889954689083 NA NA prediction 0.849779909378166 Functional Gain - PNPLA3 ENSG00000100344 CDS Human protein_coding chr22:44323028 chr22:44323028 nonsynonymous SNV 0.900 4 21 hm7G_associated_SNPs_41418 0 0 1 0 1 PNPLA3 chr22:44323047 5'GT 44323047 Upstream 20bp 38097 chr17 49237423 49237423 1 + C G UCEC 49237423 + 49237403 49237443 41 CCTGGTGAAATACATGCACTCAGGGCCGGTAGTTGCCATGG CCTGGTGAAATACATGCACTGAGGGCCGGTAGTTGCCATGG Direct Gain 0 0.92487299685222 NA NA prediction 0.84974599370444 Functional Gain - NME1;NME1-NME2 ENSG00000011052;ENSG00000239672;ENSG00000243678 CDS Human other chr17:49237423 chr17:49237423 stopgain 0.665 0 21 hm7G_associated_SNPs_41419 0 0 1 0 2 NME1;NME1-NME2 chr17:49237341 3'AG 49237341 Downstream 83bp 38098 chr17 49237423 49237423 1 + C G UCEC 49237423 + 49237403 49237443 41 CCTGGTGAAATACATGCACTCAGGGCCGGTAGTTGCCATGG CCTGGTGAAATACATGCACTGAGGGCCGGTAGTTGCCATGG Direct Gain 0 0.92487299685222 NA NA prediction 0.84974599370444 Functional Gain - NME1;NME1-NME2 ENSG00000011052;ENSG00000239672;ENSG00000243678 CDS Human other chr17:49237423 chr17:49237423 stopgain 0.665 0 21 hm7G_associated_SNPs_41419 0 0 1 0 2 NME1;NME1-NME2 chr17:49237442 5'GT 49237442 Upstream 20bp 38099 chr1 54675780 54675780 1 + A G BLCA 54675780 + 54675760 54675800 41 TCGATCTTCATGAATGCAATATTTATGATGTGAAAAATGAC TCGATCTTCATGAATGCAATGTTTATGATGTGAAAAATGAC Direct Gain 0 0.924853980490362 NA NA prediction 0.849707960980725 Functional Gain - MRPL37 ENSG00000116221 CDS Human protein_coding chr1:54675780 chr1:54675780 nonsynonymous SNV 0.071 0 21 hm7G_associated_SNPs_41420 0 0 1 9 1 MRPL37 chr1:54675804 5'GT 54675804 Upstream 25bp 38100 chr16 84229911 84229911 1 + C G BLCA 84229911 + 84229891 84229931 41 ACCTGCCGTGGCCTGAGCCTCAACTGGAGCCTGGGGGACCC ACCTGCCGTGGCCTGAGCCTGAACTGGAGCCTGGGGGACCC Direct Gain 0 0.924843037935127 NA NA prediction 0.849686075870254 Functional Gain - ADAD2 ENSG00000140955 CDS Human protein_coding chr16:84229911 chr16:84229911 synonymous SNV . 0 21 hm7G_associated_SNPs_41421 0 0 0 0 1 ADAD2 chr16:84229976 5'GT 84229976 Upstream 66bp 38101 chr10 12200092 12200092 1 + A G rs61731911 12200092 + 12200072 12200112 41 AACTTTTTAGTAAATTTACTAGGACAGTGGGCCGTGAGTAT AACTTTTTAGTAAATTTACTGGGACAGTGGGCCGTGAGTAT Direct Gain 0 0.924777436287529 NA NA prediction 0.849554872575058 Functional Gain - SEC61A2 ENSG00000065665 CDS Human protein_coding chr10:12200092 chr10:12200092 synonymous SNV . 0 21 hm7G_associated_SNPs_41424 0 0 1 0 1 SEC61A2 chr10:12200104 5'GT 12200104 Upstream 13bp 38102 chr7 102580021 102580021 1 + T G LUAD 102580021 + 102580001 102580041 41 CAGCAGCAATGGCATTGAATTCATCGATCCTGGTAAGTTCC CAGCAGCAATGGCATTGAATGCATCGATCCTGGTAAGTTCC Direct Gain 0 0.924775082918963 NA NA prediction 0.849550165837927 Functional Gain - LRRC17 ENSG00000128606 CDS Human protein_coding chr7:102580021 chr7:102580021 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_41425 0 0 0 0 1 LRRC17 chr7:102580032 5'GT 102580032 Upstream 12bp 38103 chr9 12698628 12698628 1 + T G SKCM 12698628 + 12698608 12698648 41 TCTGTGACTCCTTGGAAGATTATGATACCCTGGGAACACTT TCTGTGACTCCTTGGAAGATGATGATACCCTGGGAACACTT Direct Gain 0 0.924772011338319 NA NA prediction 0.849544022676638 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12698628 chr9:12698628 nonsynonymous SNV 0.994 5 21 hm7G_associated_SNPs_41426 0 0 0 0 1 TYRP1 chr9:12698655 5'GT 12698655 Upstream 28bp 38104 chr12 105760448 105760448 1 + C G BRCA 105760448 + 105760428 105760468 41 TGAAGCTGTCAATATGGTGTCCAGTCAAACAAAGACGGTTC TGAAGCTGTCAATATGGTGTGCAGTCAAACAAAGACGGTTC Direct Gain 0 0.924769475208312 NA NA prediction 0.849538950416624 Functional Gain - C12orf75 ENSG00000235162 CDS Human protein_coding chr12:105760448 chr12:105760448 nonsynonymous SNV 0.958 1 21 hm7G_associated_SNPs_41427 0 0 1 2 2 C12orf75 chr12:105760395 3'AG 105760395 Downstream 54bp 38105 chr12 105760448 105760448 1 + C G BRCA 105760448 + 105760428 105760468 41 TGAAGCTGTCAATATGGTGTCCAGTCAAACAAAGACGGTTC TGAAGCTGTCAATATGGTGTGCAGTCAAACAAAGACGGTTC Direct Gain 0 0.924769475208312 NA NA prediction 0.849538950416624 Functional Gain - C12orf75 ENSG00000235162 CDS Human protein_coding chr12:105760448 chr12:105760448 nonsynonymous SNV 0.958 1 21 hm7G_associated_SNPs_41427 0 0 1 2 2 C12orf75 chr12:105760474 5'GT 105760474 Upstream 27bp 38106 chr19 48519284 48519284 1 + T G LIHC 48519284 + 48519264 48519304 41 AGAAACAGCAGTGGAAATTCTGTGAAACGAATGGTGAGCCC AGAAACAGCAGTGGAAATTCGGTGAAACGAATGGTGAGCCC Direct Gain 0 0.924759960264278 NA NA prediction 0.849519920528556 Functional Gain - ELSPBP1 ENSG00000169393 CDS Human protein_coding chr19:48519284 chr19:48519284 nonsynonymous SNV 0.915 5 21 hm7G_associated_SNPs_41428 0 0 0 0 1 ELSPBP1 chr19:48519296 5'GT 48519296 Upstream 13bp 38107 chr11 118983583 118983583 1 + A G CESC 118983583 + 118983563 118983603 41 CCCCGTATAGACGGCAAATTAGGTAAAGAGAAGGAGCCTGG CCCCGTATAGACGGCAAATTGGGTAAAGAGAAGGAGCCTGG Direct Gain 0 0.924733688454524 NA NA prediction 0.849467376909048 Functional Gain - C2CD2L ENSG00000172375 CDS Human protein_coding chr11:118983583 chr11:118983583 synonymous SNV . 0 21 hm7G_associated_SNPs_41431 0 0 0 0 1 C2CD2L chr11:118983584 5'GT 118983584 Upstream 2bp 38108 chr14 21500100 21500100 1 + A G LIHC 21500100 + 21500080 21500120 41 TTTGACAGACACCAGCAAGTACACCGGCACCCACAAGGAGC TTTGACAGACACCAGCAAGTGCACCGGCACCCACAAGGAGC Direct Gain 0 0.924700847134809 NA NA prediction 0.849401694269618 Functional Gain - TPPP2 ENSG00000179636 CDS Human protein_coding chr14:21500100 chr14:21500100 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41435 0 0 0 0 1 TPPP2 chr14:21500051 3'AG 21500051 Downstream 50bp 38109 chrX 37515009 37515009 1 + A G SKCM 37515009 + 37514989 37515029 41 TCTGGGAAGCAGTATGCCATAAAGAAGAGGAAACCATTCCC TCTGGGAAGCAGTATGCCATGAAGAAGAGGAAACCATTCCC Direct Gain 0 0.924693260887747 NA NA prediction 0.849386521775495 Functional Gain - LANCL3 ENSG00000147036 CDS Human protein_coding chrX:37515009 chrX:37515009 nonsynonymous SNV 0.790 0 21 hm7G_associated_SNPs_41436 0 0 0 0 2 LANCL3 chrX:37514941 3'AG 37514941 Downstream 69bp 38110 chrX 37515009 37515009 1 + A G SKCM 37515009 + 37514989 37515029 41 TCTGGGAAGCAGTATGCCATAAAGAAGAGGAAACCATTCCC TCTGGGAAGCAGTATGCCATGAAGAAGAGGAAACCATTCCC Direct Gain 0 0.924693260887747 NA NA prediction 0.849386521775495 Functional Gain - LANCL3 ENSG00000147036 CDS Human protein_coding chrX:37515009 chrX:37515009 nonsynonymous SNV 0.790 0 21 hm7G_associated_SNPs_41436 0 0 0 0 2 LANCL3 chrX:37515064 5'GT 37515064 Upstream 56bp 38111 chr6 97063516 97063516 1 + A G UCEC 97063516 + 97063496 97063536 41 GCCAAGTTTATCTGCTTTCAAGACAGCCAGTGGCATAGCGA GCCAAGTTTATCTGCTTTCAGGACAGCCAGTGGCATAGCGA Direct Gain 0 0.924692055309689 NA NA prediction 0.849384110619379 Functional Gain - FHL5 ENSG00000112214 CDS Human protein_coding chr6:97063516 chr6:97063516 synonymous SNV . 0 21 hm7G_associated_SNPs_41437 0 0 0 0 1 FHL5 chr6:97063485 3'AG 97063485 Downstream 32bp 38112 chr6 55120018 55120018 1 + A G PRAD 55120018 + 55119998 55120038 41 TCTGTCACCCTTTGATGTTTAAGAGCACAGCAAAGCGGGCC TCTGTCACCCTTTGATGTTTGAGAGCACAGCAAAGCGGGCC Direct Gain 0 0.924683063587397 NA NA prediction 0.849366127174793 Functional Gain - HCRTR2 ENSG00000137252 CDS Human protein_coding chr6:55120018 chr6:55120018 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41438 0 0 0 0 1 HCRTR2 chr6:55119934 3'AG 55119934 Downstream 85bp 38113 chr19 41086559 41086559 1 + A G LUAD 41086559 + 41086539 41086579 41 TACCCAGTTTCTAGTCTGCTACAGGTGCTTGGGGAGGGAGT TACCCAGTTTCTAGTCTGCTGCAGGTGCTTGGGGAGGGAGT Direct Gain 0 0.924672005593625 NA NA prediction 0.849344011187249 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41086559 chr19:41086559 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_41440 0 0 0 0 2 SHKBP1 chr19:41086472 3'AG 41086472 Downstream 88bp 38114 chr19 41086559 41086559 1 + A G LUAD 41086559 + 41086539 41086579 41 TACCCAGTTTCTAGTCTGCTACAGGTGCTTGGGGAGGGAGT TACCCAGTTTCTAGTCTGCTGCAGGTGCTTGGGGAGGGAGT Direct Gain 0 0.924672005593625 NA NA prediction 0.849344011187249 Functional Gain - SHKBP1 ENSG00000160410 CDS Human protein_coding chr19:41086559 chr19:41086559 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_41440 0 0 0 0 2 SHKBP1 chr19:41086562 5'GT 41086562 Upstream 4bp 38115 chr3 50131242 50131242 1 + C G CESC 50131242 + 50131222 50131262 41 CACGACTATAGGCATGACATCAGTGACGAGAGGGAGAGCAA CACGACTATAGGCATGACATGAGTGACGAGAGGGAGAGCAA Direct Gain 0 0.924667934913361 NA NA prediction 0.849335869826721 Functional Gain - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131242 chr3:50131242 stopgain 1.000 0 21 hm7G_associated_SNPs_41441 0 0 1 0 2 RBM5 chr3:50131153 3'AG 50131153 Downstream 90bp 38116 chr3 50131242 50131242 1 + C G CESC 50131242 + 50131222 50131262 41 CACGACTATAGGCATGACATCAGTGACGAGAGGGAGAGCAA CACGACTATAGGCATGACATGAGTGACGAGAGGGAGAGCAA Direct Gain 0 0.924667934913361 NA NA prediction 0.849335869826721 Functional Gain - RBM5 ENSG00000003756 CDS Human protein_coding chr3:50131242 chr3:50131242 stopgain 1.000 0 21 hm7G_associated_SNPs_41441 0 0 1 0 2 RBM5 chr3:50131308 5'GT 50131308 Upstream 67bp 38117 chr7 93551489 93551489 1 + A G UCEC 93551489 + 93551469 93551509 41 AAGATTTGCCAGAGAAGGAAAAACTGAAAATGGAAGTTGAG AAGATTTGCCAGAGAAGGAAGAACTGAAAATGGAAGTTGAG Direct Gain 0 0.924622545912791 NA NA prediction 0.849245091825582 Functional Gain - GNG11 ENSG00000127920 CDS Human protein_coding chr7:93551489 chr7:93551489 nonsynonymous SNV 0.980 2 21 hm7G_associated_SNPs_41443 0 0 0 0 1 GNG11 chr7:93551545 5'GT 93551545 Upstream 57bp 38118 chr19 49469092 49469092 1 + C G STAD 49469092 + 49469072 49469112 41 CACTTCTTCCGCGAATTGGCCGAGGAGAAGCGCGAGGGCTA CACTTCTTCCGCGAATTGGCGGAGGAGAAGCGCGAGGGCTA Direct Gain 0 0.924595998228068 NA NA prediction 0.849191996456137 Functional Gain - FTL ENSG00000087086 CDS Human protein_coding chr19:49469092 chr19:49469092 synonymous SNV . 0 21 hm7G_associated_SNPs_41447 0 0 1 0 2 FTL chr19:49469027 3'AG 49469027 Downstream 66bp 38119 chr19 49469092 49469092 1 + C G STAD 49469092 + 49469072 49469112 41 CACTTCTTCCGCGAATTGGCCGAGGAGAAGCGCGAGGGCTA CACTTCTTCCGCGAATTGGCGGAGGAGAAGCGCGAGGGCTA Direct Gain 0 0.924595998228068 NA NA prediction 0.849191996456137 Functional Gain - FTL ENSG00000087086 CDS Human protein_coding chr19:49469092 chr19:49469092 synonymous SNV . 0 21 hm7G_associated_SNPs_41447 0 0 1 0 2 FTL chr19:49469173 5'GT 49469173 Upstream 82bp 38120 chr17 46058612 46058612 1 + A G rs61758369 46058612 + 46058592 46058632 41 GAAGAAAGAGCTGATGGTGCAGAAGCAGCAGGAGGCACTTG GAAGAAAGAGCTGATGGTGCGGAAGCAGCAGGAGGCACTTG Direct Gain 0 0.924564586101487 NA NA prediction 0.849129172202975 Functional Gain - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46058612 chr17:46058612 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_41453 0 0 1 0 2 CDK5RAP3 chr17:46058529 3'AG 46058529 Downstream 84bp 38121 chr17 46058612 46058612 1 + A G rs61758369 46058612 + 46058592 46058632 41 GAAGAAAGAGCTGATGGTGCAGAAGCAGCAGGAGGCACTTG GAAGAAAGAGCTGATGGTGCGGAAGCAGCAGGAGGCACTTG Direct Gain 0 0.924564586101487 NA NA prediction 0.849129172202975 Functional Gain - CDK5RAP3 ENSG00000108465 CDS Human protein_coding chr17:46058612 chr17:46058612 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_41453 0 0 1 0 2 CDK5RAP3 chr17:46058700 5'GT 46058700 Upstream 89bp 38122 chr11 1862317 1862317 1 + A G rs201133081 1862317 + 1862297 1862337 41 GGCAAGTTCAAGCGGCCCCCACTGCGGAGGGTGCGCATGTC GGCAAGTTCAAGCGGCCCCCGCTGCGGAGGGTGCGCATGTC Direct Gain 0 0.924530632984573 NA NA prediction 0.849061265969145 Functional Gain - TNNI2 ENSG00000130598 CDS Human protein_coding chr11:1862317 chr11:1862317 synonymous SNV . 0 21 hm7G_associated_SNPs_41454 1 0 1 0 1 TNNI2 chr11:1862261 3'AG 1862261 Downstream 57bp 38123 chr2 220290711 220290711 1 + A G LUSC 220290711 + 220290691 220290731 41 GCAGCAGCATGAAGTGCTCTAAAGACAGAGACCCTCTGCCA GCAGCAGCATGAAGTGCTCTGAAGACAGAGACCCTCTGCCA Direct Gain 0 0.924526066260771 NA NA prediction 0.849052132521543 Functional Gain - DES ENSG00000175084 CDS Human protein_coding chr2:220290711 chr2:220290711 synonymous SNV . 0 21 hm7G_associated_SNPs_41455 0 0 0 0 1 DES chr2:220290671 3'AG 220290671 Downstream 41bp 38124 chr11 114310303 114310303 1 + A G PAAD 114310303 + 114310283 114310323 41 GCGGGGTGTAGGTGGGAGTCACGGACGGTTCGGGGCCCGAG GCGGGGTGTAGGTGGGAGTCGCGGACGGTTCGGGGCCCGAG Direct Gain 0 0.924516202815503 NA NA prediction 0.849032405631006 Functional Gain - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114310303 chr11:114310303 nonsynonymous SNV 0.967 0 21 hm7G_associated_SNPs_41456 0 0 1 0 1 REXO2 chr11:114310397 5'GT 114310397 Upstream 95bp 38125 chr15 66832447 66832447 1 + A G LIHC 66832447 + 66832427 66832467 41 TTTCCTTAGTGAGAAGCCACAGAAATGGAGAGTGGAAATAT TTTCCTTAGTGAGAAGCCACGGAAATGGAGAGTGGAAATAT Direct Gain 0 0.92450564466994 NA NA prediction 0.849011289339881 Functional Gain - ZWILCH ENSG00000174442 CDS Human protein_coding chr15:66832447 chr15:66832447 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41457 0 0 0 0 1 ZWILCH chr15:66832436 3'AG 66832436 Downstream 12bp 38126 chr14 50247447 50247447 1 + A G UCEC 50247447 + 50247427 50247467 41 CCTGGACTTACTGCATCAGTAAAAATGAATGGATACAATTT CCTGGACTTACTGCATCAGTGAAAATGAATGGATACAATTT Direct Gain 0 0.924486009422044 NA NA prediction 0.848972018844088 Functional Gain - KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50247447 chr14:50247447 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41458 0 0 1 0 2 KLHDC2 chr14:50247421 3'AG 50247421 Downstream 27bp 38127 chr14 50247447 50247447 1 + A G UCEC 50247447 + 50247427 50247467 41 CCTGGACTTACTGCATCAGTAAAAATGAATGGATACAATTT CCTGGACTTACTGCATCAGTGAAAATGAATGGATACAATTT Direct Gain 0 0.924486009422044 NA NA prediction 0.848972018844088 Functional Gain - KLHDC2 ENSG00000165516 CDS Human protein_coding chr14:50247447 chr14:50247447 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41458 0 0 1 0 2 KLHDC2 chr14:50247493 5'GT 50247493 Upstream 47bp 38128 chr12 56619991 56619991 1 + A G LIHC 56619991 + 56619971 56620011 41 TGGTTTATTCTGAGGTTCCTAACTTCAGTGAGCCAAACCCA TGGTTTATTCTGAGGTTCCTGACTTCAGTGAGCCAAACCCA Direct Gain 0 0.92448539425727 NA NA prediction 0.84897078851454 Functional Gain - NABP2 ENSG00000139579 CDS Human protein_coding chr12:56619991 chr12:56619991 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41459 0 0 1 0 2 NABP2 chr12:56619963 3'AG 56619963 Downstream 29bp 38129 chr12 56619991 56619991 1 + A G LIHC 56619991 + 56619971 56620011 41 TGGTTTATTCTGAGGTTCCTAACTTCAGTGAGCCAAACCCA TGGTTTATTCTGAGGTTCCTGACTTCAGTGAGCCAAACCCA Direct Gain 0 0.92448539425727 NA NA prediction 0.84897078851454 Functional Gain - NABP2 ENSG00000139579 CDS Human protein_coding chr12:56619991 chr12:56619991 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41459 0 0 1 0 2 NABP2 chr12:56620044 5'GT 56620044 Upstream 54bp 38130 chr4 4864494 4864494 1 + T G OV 4864494 + 4864474 4864514 41 CCGTAAGCCGCGGACGCCCTTCACCACCGCGCAGCTGCTGG CCGTAAGCCGCGGACGCCCTGCACCACCGCGCAGCTGCTGG Direct Gain 0 0.924449482767232 NA NA prediction 0.848898965534464 Functional Gain - MSX1 ENSG00000163132 CDS Human protein_coding chr4:4864494 chr4:4864494 nonsynonymous SNV 0.918 5 21 hm7G_associated_SNPs_41461 0 0 0 0 1 MSX1 chr4:4864428 3'AG 4864428 Downstream 67bp 38131 chr10 114917784 114917784 1 + A G LIHC 114917784 + 114917764 114917804 41 TCATCTCTTCATCTAGGGAAAGAAGAAGAAGAGGAAAAGGG TCATCTCTTCATCTAGGGAAGGAAGAAGAAGAGGAAAAGGG Direct Gain 0 0.924432959970651 NA NA prediction 0.848865919941302 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114917784 chr10:114917784 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_41463 0 0 1 0 2 TCF7L2 chr10:114917780 3'AG 114917780 Downstream 5bp 38132 chr10 114917784 114917784 1 + A G LIHC 114917784 + 114917764 114917804 41 TCATCTCTTCATCTAGGGAAAGAAGAAGAAGAGGAAAAGGG TCATCTCTTCATCTAGGGAAGGAAGAAGAAGAGGAAAAGGG Direct Gain 0 0.924432959970651 NA NA prediction 0.848865919941302 Functional Gain - TCF7L2 ENSG00000148737 CDS Human protein_coding chr10:114917784 chr10:114917784 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_41463 0 0 1 0 2 TCF7L2 chr10:114917828 5'GT 114917828 Upstream 45bp 38133 chr17 28506158 28506158 1 + A G KICH 28506158 + 28506138 28506178 41 GTTGAGATCAGAAAAAAGGAACAGGAAAAAAGAATGGAAAA GTTGAGATCAGAAAAAAGGAGCAGGAAAAAAGAATGGAAAA Direct Gain 0 0.924412936490514 NA NA prediction 0.848825872981028 Functional Gain - NSRP1 ENSG00000126653 CDS Human protein_coding chr17:28506158 chr17:28506158 synonymous SNV . 0 21 hm7G_associated_SNPs_41464 0 0 0 0 1 NSRP1 chr17:28506108 3'AG 28506108 Downstream 51bp 38134 chr17 18111625 18111625 1 + A G LUAD 18111625 + 18111605 18111645 41 TAGCTTCAGCTCTGAGAACTACTGGCGCAAGTCATACGAGT TAGCTTCAGCTCTGAGAACTGCTGGCGCAAGTCATACGAGT Direct Gain 0 0.92430169061151 NA NA prediction 0.84860338122302 Functional Gain - ALKBH5 ENSG00000091542 CDS Human protein_coding chr17:18111625 chr17:18111625 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41468 0 0 1 0 1 ALKBH5 chr17:18111533 3'AG 18111533 Downstream 93bp 38135 chr5 70945934 70945934 1 + C G CESC 70945934 + 70945914 70945954 41 TTGGCCAAATGCTCGTATCTCAGTGATGGGAGGAGAGCAGG TTGGCCAAATGCTCGTATCTGAGTGATGGGAGGAGAGCAGG Direct Gain 0 0.924298807171602 NA NA prediction 0.848597614343205 Functional Gain - MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70945934 chr5:70945934 stopgain 0.976 1 21 hm7G_associated_SNPs_41469 0 0 1 0 2 MCCC2 chr5:70945896 3'AG 70945896 Downstream 39bp 38136 chr5 70945934 70945934 1 + C G CESC 70945934 + 70945914 70945954 41 TTGGCCAAATGCTCGTATCTCAGTGATGGGAGGAGAGCAGG TTGGCCAAATGCTCGTATCTGAGTGATGGGAGGAGAGCAGG Direct Gain 0 0.924298807171602 NA NA prediction 0.848597614343205 Functional Gain - MCCC2 ENSG00000131844 CDS Human protein_coding chr5:70945934 chr5:70945934 stopgain 0.976 1 21 hm7G_associated_SNPs_41469 0 0 1 0 2 MCCC2 chr5:70946010 5'GT 70946010 Upstream 77bp 38137 chr1 180163447 180163447 1 + C G HNSC 180163447 + 180163427 180163467 41 CGAGCAGATGGCTGCTGCCTCCATGCACCGGGTGGGGAGTC CGAGCAGATGGCTGCTGCCTGCATGCACCGGGTGGGGAGTC Direct Gain 0 0.92429444412714 NA NA prediction 0.84858888825428 Functional Gain - QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180163447 chr1:180163447 nonsynonymous SNV 0.341 4 21 hm7G_associated_SNPs_41471 0 0 1 0 2 QSOX1 chr1:180163348 3'AG 180163348 Downstream 100bp 38138 chr1 180163447 180163447 1 + C G HNSC 180163447 + 180163427 180163467 41 CGAGCAGATGGCTGCTGCCTCCATGCACCGGGTGGGGAGTC CGAGCAGATGGCTGCTGCCTGCATGCACCGGGTGGGGAGTC Direct Gain 0 0.92429444412714 NA NA prediction 0.84858888825428 Functional Gain - QSOX1 ENSG00000116260 CDS Human protein_coding chr1:180163447 chr1:180163447 nonsynonymous SNV 0.341 4 21 hm7G_associated_SNPs_41471 0 0 1 0 2 QSOX1 chr1:180163527 5'GT 180163527 Upstream 81bp 38139 chr9 91930195 91930195 1 + A G STAD 91930195 + 91930175 91930215 41 GAGTCTAGGCTGGGTTCATTACATGATTCATGAGCCAGGTA GAGTCTAGGCTGGGTTCATTGCATGATTCATGAGCCAGGTA Direct Gain 0 0.924261315943842 NA NA prediction 0.848522631887684 Functional Gain - CKS2 ENSG00000123975 CDS Human protein_coding chr9:91930195 chr9:91930195 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41474 0 0 1 0 1 CKS2 chr9:91930212 5'GT 91930212 Upstream 18bp 38140 chr6 117045527 117045527 1 + A G PRAD 117045527 + 117045507 117045547 41 ATATTGTGACTGGTGATGATATTCAAACACAGGTGAGTTCA ATATTGTGACTGGTGATGATGTTCAAACACAGGTGAGTTCA Direct Gain 0 0.924222329070418 NA NA prediction 0.848444658140836 Functional Gain - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117045527 chr6:117045527 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41475 0 0 1 0 2 KPNA5 chr6:117045460 3'AG 117045460 Downstream 68bp 38141 chr6 117045527 117045527 1 + A G PRAD 117045527 + 117045507 117045547 41 ATATTGTGACTGGTGATGATATTCAAACACAGGTGAGTTCA ATATTGTGACTGGTGATGATGTTCAAACACAGGTGAGTTCA Direct Gain 0 0.924222329070418 NA NA prediction 0.848444658140836 Functional Gain - KPNA5 ENSG00000196911 CDS Human protein_coding chr6:117045527 chr6:117045527 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41475 0 0 1 0 2 KPNA5 chr6:117045538 5'GT 117045538 Upstream 12bp 38142 chr4 140291507 140291507 1 + T G ESCA 140291507 + 140291487 140291527 41 AAGAAGAAGGATGATGATGATGAGGAGATAGGAGGTCCAAA AAGAAGAAGGATGATGATGAGGAGGAGATAGGAGGTCCAAA Direct Gain 0 0.924167057677866 NA NA prediction 0.848334115355732 Functional Gain - NAA15 ENSG00000164134 CDS Human protein_coding chr4:140291507 chr4:140291507 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_41476 0 0 1 0 1 NAA15 chr4:140291558 5'GT 140291558 Upstream 52bp 38143 chr4 128808620 128808620 1 + A G rs112831813 128808620 + 128808600 128808640 41 ACACCTCAGACTGAAACCGTACAACAGTGGTTTGGGAATCT ACACCTCAGACTGAAACCGTGCAACAGTGGTTTGGGAATCT Direct Gain 0 0.92416005289735 NA NA prediction 0.8483201057947 Functional Gain - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128808620 chr4:128808620 synonymous SNV . 0 21 hm7G_associated_SNPs_41477 0 0 1 0 2 PLK4 chr4:128808551 3'AG 128808551 Downstream 70bp 38144 chr4 128808620 128808620 1 + A G rs112831813 128808620 + 128808600 128808640 41 ACACCTCAGACTGAAACCGTACAACAGTGGTTTGGGAATCT ACACCTCAGACTGAAACCGTGCAACAGTGGTTTGGGAATCT Direct Gain 0 0.92416005289735 NA NA prediction 0.8483201057947 Functional Gain - PLK4 ENSG00000142731 CDS Human protein_coding chr4:128808620 chr4:128808620 synonymous SNV . 0 21 hm7G_associated_SNPs_41477 0 0 1 0 2 PLK4 chr4:128808651 5'GT 128808651 Upstream 32bp 38145 chr15 40862066 40862066 1 + A G HNSC 40862066 + 40862046 40862086 41 CCGAGCTCAGCCCCTGGCCTACTATGAGGCCGCGGTCCGGG CCGAGCTCAGCCCCTGGCCTGCTATGAGGCCGCGGTCCGGG Direct Gain 0 0.924154196107696 NA NA prediction 0.848308392215393 Functional Gain - RPUSD2 ENSG00000166133 CDS Human protein_coding chr15:40862066 chr15:40862066 nonsynonymous SNV 0.951 4 21 hm7G_associated_SNPs_41478 0 0 0 0 1 RPUSD2 chr15:40862142 5'GT 40862142 Upstream 77bp 38146 chr3 8787493 8787493 1 + C G BLCA 8787493 + 8787473 8787513 41 CGCACCTTCTGCAACCCACTCTTCGCGGCCCTGGGCCAGGT CGCACCTTCTGCAACCCACTGTTCGCGGCCCTGGGCCAGGT Direct Gain 0 0.924141174519097 NA NA prediction 0.848282349038194 Functional Gain - CAV3 ENSG00000182533 CDS Human protein_coding chr3:8787493 chr3:8787493 synonymous SNV . 0 21 hm7G_associated_SNPs_41480 0 0 0 0 1 CAV3 chr3:8787559 5'GT 8787559 Upstream 67bp 38147 chr19 54396638 54396638 1 + T G COAD 54396638 + 54396618 54396658 41 TTGTAACTACCCCCTGGAATTGTATGAGGTGAGTAGAACCA TTGTAACTACCCCCTGGAATGGTATGAGGTGAGTAGAACCA Direct Gain 0 0.924139219618125 NA NA prediction 0.84827843923625 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54396638 chr19:54396638 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_41481 0 0 0 0 2 PRKCG chr19:54396616 3'AG 54396616 Downstream 23bp 38148 chr19 54396638 54396638 1 + T G COAD 54396638 + 54396618 54396658 41 TTGTAACTACCCCCTGGAATTGTATGAGGTGAGTAGAACCA TTGTAACTACCCCCTGGAATGGTATGAGGTGAGTAGAACCA Direct Gain 0 0.924139219618125 NA NA prediction 0.84827843923625 Functional Gain - PRKCG ENSG00000126583 CDS Human protein_coding chr19:54396638 chr19:54396638 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_41481 0 0 0 0 2 PRKCG chr19:54396645 5'GT 54396645 Upstream 8bp 38149 chr12 247613 247613 1 - G C LUSC 247613 - 247593 247633 41 TTTCTCGGCCGCCAGGCTCTCGGCCGTGGGTGACCGCACCT TTTCTCGGCCGCCAGGCTCTGGGCCGTGGGTGACCGCACCT Direct Gain 0 0.924106187676681 NA NA prediction 0.848212375353361 Functional Gain - IQSEC3 ENSG00000120645 CDS Human protein_coding chr12:247613 chr12:247613 nonsynonymous SNV 0.084 3 21 hm7G_associated_SNPs_41483 0 0 0 0 1 IQSEC3 chr12:247618 3'AG 247618 Downstream 6bp 38150 chr17 4701090 4701090 1 + C G UCEC 4701090 + 4701070 4701110 41 CATCATCGCAGGCTGGGACCCTCAAGAAGGAGGGCAGGTCA CATCATCGCAGGCTGGGACCGTCAAGAAGGAGGGCAGGTCA Direct Gain 0 0.92407306880918 NA NA prediction 0.84814613761836 Functional Gain - PSMB6 ENSG00000142507 CDS Human protein_coding chr17:4701090 chr17:4701090 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41484 0 0 1 0 1 PSMB6 chr17:4701106 5'GT 4701106 Upstream 17bp 38151 chrX 64956691 64956691 1 + A G LIHC 64956691 + 64956671 64956711 41 ATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAG ATGAGAAGAAGAAGCGTGAAGTGGCAGAGAAGGAGAAAGAG Direct Gain 0 0.924066046096967 NA NA prediction 0.848132092193933 Functional Gain - MSN ENSG00000147065 CDS Human protein_coding chrX:64956691 chrX:64956691 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_41485 0 0 1 0 2 MSN chrX:64956657 3'AG 64956657 Downstream 35bp 38152 chrX 64956691 64956691 1 + A G LIHC 64956691 + 64956671 64956711 41 ATGAGAAGAAGAAGCGTGAAATGGCAGAGAAGGAGAAAGAG ATGAGAAGAAGAAGCGTGAAGTGGCAGAGAAGGAGAAAGAG Direct Gain 0 0.924066046096967 NA NA prediction 0.848132092193933 Functional Gain - MSN ENSG00000147065 CDS Human protein_coding chrX:64956691 chrX:64956691 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_41485 0 0 1 0 2 MSN chrX:64956787 5'GT 64956787 Upstream 97bp 38153 chr1 192547498 192547498 1 + T G LUSC 192547498 + 192547478 192547518 41 TATATAAAGCATTTGTGCATTCAGATGCTGCTAAACAAGTG TATATAAAGCATTTGTGCATGCAGATGCTGCTAAACAAGTG Direct Gain 0 0.924055501286368 NA NA prediction 0.848111002572736 Functional Gain - RGS1 ENSG00000090104 CDS Human protein_coding chr1:192547498 chr1:192547498 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41487 0 0 0 0 1 RGS1 chr1:192547515 5'GT 192547515 Upstream 18bp 38154 chr12 21531175 21531175 1 + C G BLCA 21531175 + 21531155 21531195 41 TGTTCCATGTTACCAGTCATCAGGTGGAAAAGCGGAAATGC TGTTCCATGTTACCAGTCATGAGGTGGAAAAGCGGAAATGC Direct Gain 0 0.924050637509271 NA NA prediction 0.848101275018542 Functional Gain - IAPP ENSG00000121351 CDS Human protein_coding chr12:21531175 chr12:21531175 nonsynonymous SNV 0.275 1 21 hm7G_associated_SNPs_41488 0 0 0 0 1 IAPP chr12:21531171 3'AG 21531171 Downstream 5bp 38155 chr20 207970 207970 1 + A G LIHC 207970 + 207950 207990 41 CTTTGCCAGCCTCATGCTACAGTACCAGGTGAACACAGGTA CTTTGCCAGCCTCATGCTACGGTACCAGGTGAACACAGGTA Direct Gain 0 0.924017127661723 NA NA prediction 0.848034255323445 Functional Gain - DEFB129 ENSG00000125903 CDS Human protein_coding chr20:207970 chr20:207970 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41490 0 0 0 0 1 DEFB129 chr20:207987 5'GT 207987 Upstream 18bp 38156 chr3 139065752 139065752 1 + A G rs147561953 139065752 + 139065732 139065772 41 GCCCAGAGACCAAGAAACCTACATTTATGGATGAGGAAGTT GCCCAGAGACCAAGAAACCTGCATTTATGGATGAGGAAGTT Direct Gain 0 0.924009856920571 NA NA prediction 0.848019713841142 Functional Gain - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139065752 chr3:139065752 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41491 0 0 1 0 2 MRPS22 chr3:139065720 3'AG 139065720 Downstream 33bp 38157 chr3 139065752 139065752 1 + A G rs147561953 139065752 + 139065732 139065772 41 GCCCAGAGACCAAGAAACCTACATTTATGGATGAGGAAGTT GCCCAGAGACCAAGAAACCTGCATTTATGGATGAGGAAGTT Direct Gain 0 0.924009856920571 NA NA prediction 0.848019713841142 Functional Gain - MRPS22 ENSG00000175110 CDS Human protein_coding chr3:139065752 chr3:139065752 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41491 0 0 1 0 2 MRPS22 chr3:139065723 3'AG 139065723 Downstream 30bp 38158 chr3 129221661 129221661 1 + A G SKCM 129221661 + 129221641 129221681 41 TGGCTATGCTGCTGAGACCTACCTGAAGATGGGTGACCTCA TGGCTATGCTGCTGAGACCTGCCTGAAGATGGGTGACCTCA Direct Gain 0 0.92400169781142 NA NA prediction 0.84800339562284 Functional Gain - IFT122 ENSG00000163913 CDS Human protein_coding chr3:129221661 chr3:129221661 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_41492 0 0 1 0 1 IFT122 chr3:129221725 5'GT 129221725 Upstream 65bp 38159 chr21 37744789 37744789 1 + A G LIHC 37744789 + 37744769 37744809 41 CAACAGATGTTTCAACATCAAGTAACATTGAGGAGTCTGTA CAACAGATGTTTCAACATCAGGTAACATTGAGGAGTCTGTA Direct Gain 0 0.923981213935264 NA NA prediction 0.847962427870529 Functional Gain - MORC3 ENSG00000159256 CDS Human protein_coding chr21:37744789 chr21:37744789 nonsynonymous SNV 0.780 1 21 hm7G_associated_SNPs_41493 0 0 1 0 1 MORC3 chr21:37744829 5'GT 37744829 Upstream 41bp 38160 chr14 97347544 97347544 1 + A G SKCM 97347544 + 97347524 97347564 41 CAGAAAGAGAGTCCAGAAGTAATTCAGATGCTGTGAACCAG CAGAAAGAGAGTCCAGAAGTGATTCAGATGCTGTGAACCAG Direct Gain 0 0.923974842635723 NA NA prediction 0.847949685271446 Functional Gain - VRK1 ENSG00000100749 CDS Human protein_coding chr14:97347544 chr14:97347544 synonymous SNV . 0 21 hm7G_associated_SNPs_41494 0 0 1 0 1 VRK1 chr14:97347514 3'AG 97347514 Downstream 31bp 38161 chr2 242650850 242650850 1 + A G UCEC 242650850 + 242650830 242650870 41 GCGCTTTGAAGCAGATCTGAAGGACAAGATGGAGGGCAGTG GCGCTTTGAAGCAGATCTGAGGGACAAGATGGAGGGCAGTG Direct Gain 0 0.923970726831609 NA NA prediction 0.847941453663218 Functional Gain - ING5 ENSG00000168395 CDS Human protein_coding chr2:242650850 chr2:242650850 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_41495 0 0 1 0 1 ING5 chr2:242650792 3'AG 242650792 Downstream 59bp 38162 chr12 27944677 27944677 1 + C G STAD 27944677 + 27944657 27944697 41 GTGGCTGTTAATTCAAAACTCTATGCCATCGGAGGGCAGGC GTGGCTGTTAATTCAAAACTGTATGCCATCGGAGGGCAGGC Direct Gain 0 0.923953124281652 NA NA prediction 0.847906248563303 Functional Gain - KLHL42 ENSG00000087448 CDS Human protein_coding chr12:27944677 chr12:27944677 synonymous SNV . 0 21 hm7G_associated_SNPs_41496 0 0 1 0 1 KLHL42 chr12:27944641 3'AG 27944641 Downstream 37bp 38163 chr1 43125211 43125211 1 + A G UCEC 43125211 + 43125191 43125231 41 AGGAAAGATGGGGTTCCAATAGGATACAAAGGAAGCACCTT AGGAAAGATGGGGTTCCAATGGGATACAAAGGAAGCACCTT Direct Gain 0 0.92394251728299 NA NA prediction 0.847885034565981 Functional Gain - PPIH ENSG00000171960 CDS Human protein_coding chr1:43125211 chr1:43125211 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41497 0 0 1 0 2 PPIH chr1:43125193 3'AG 43125193 Downstream 19bp 38164 chr1 43125211 43125211 1 + A G UCEC 43125211 + 43125191 43125231 41 AGGAAAGATGGGGTTCCAATAGGATACAAAGGAAGCACCTT AGGAAAGATGGGGTTCCAATGGGATACAAAGGAAGCACCTT Direct Gain 0 0.92394251728299 NA NA prediction 0.847885034565981 Functional Gain - PPIH ENSG00000171960 CDS Human protein_coding chr1:43125211 chr1:43125211 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41497 0 0 1 0 2 PPIH chr1:43125237 5'GT 43125237 Upstream 27bp 38165 chr2 74650465 74650465 1 + A G rs147864992 74650465 + 74650445 74650485 41 GATGTACGAGTCCAATGGCTACACCATGGTCTACTGGCATG GATGTACGAGTCCAATGGCTGCACCATGGTCTACTGGCATG Direct Gain 0 0.92393216705053 NA NA prediction 0.84786433410106 Functional Gain - WDR54 ENSG00000005448 CDS Human protein_coding chr2:74650465 chr2:74650465 nonsynonymous SNV 0.810 1 21 hm7G_associated_SNPs_41498 0 0 1 0 2 WDR54 chr2:74650446 3'AG 74650446 Downstream 20bp 38166 chr2 74650465 74650465 1 + A G rs147864992 74650465 + 74650445 74650485 41 GATGTACGAGTCCAATGGCTACACCATGGTCTACTGGCATG GATGTACGAGTCCAATGGCTGCACCATGGTCTACTGGCATG Direct Gain 0 0.92393216705053 NA NA prediction 0.84786433410106 Functional Gain - WDR54 ENSG00000005448 CDS Human protein_coding chr2:74650465 chr2:74650465 nonsynonymous SNV 0.810 1 21 hm7G_associated_SNPs_41498 0 0 1 0 2 WDR54 chr2:74650512 5'GT 74650512 Upstream 48bp 38167 chr19 42821063 42821063 1 + A G READ 42821063 + 42821043 42821083 41 CTCCGTGAAGTTGTCTGTCTACATGACCCTGTACACGCTCA CTCCGTGAAGTTGTCTGTCTGCATGACCCTGTACACGCTCA Direct Gain 0 0.923904274071768 NA NA prediction 0.847808548143536 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42821063 chr19:42821063 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41500 0 0 0 0 2 TMEM145 chr19:42821022 3'AG 42821022 Downstream 42bp 38168 chr19 42821063 42821063 1 + A G READ 42821063 + 42821043 42821083 41 CTCCGTGAAGTTGTCTGTCTACATGACCCTGTACACGCTCA CTCCGTGAAGTTGTCTGTCTGCATGACCCTGTACACGCTCA Direct Gain 0 0.923904274071768 NA NA prediction 0.847808548143536 Functional Gain - TMEM145 ENSG00000167619 CDS Human protein_coding chr19:42821063 chr19:42821063 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41500 0 0 0 0 2 TMEM145 chr19:42821115 5'GT 42821115 Upstream 53bp 38169 chr1 47280781 47280781 1 + C G BLCA 47280781 + 47280761 47280801 41 AAACTGTCAGATGCAGACCTCCGGGCTGAAGTGGACACATT AAACTGTCAGATGCAGACCTGCGGGCTGAAGTGGACACATT Direct Gain 0 0.923885805834788 NA NA prediction 0.847771611669577 Functional Gain - CYP4B1 ENSG00000142973 CDS Human protein_coding chr1:47280781 chr1:47280781 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_41502 0 0 0 0 1 CYP4B1 chr1:47280746 3'AG 47280746 Downstream 36bp 38170 chr16 67234137 67234137 1 + A G UCEC 67234137 + 67234117 67234157 41 TGGGTGGGCTGCAGAGTAACAGTCCTGAAGGGCGCCGGGAA TGGGTGGGCTGCAGAGTAACGGTCCTGAAGGGCGCCGGGAA Direct Gain 0 0.923875064638801 NA NA prediction 0.847750129277602 Functional Gain - ELMO3 ENSG00000102890 CDS Human protein_coding chr16:67234137 chr16:67234137 nonsynonymous SNV 0.637 0 21 hm7G_associated_SNPs_41504 0 0 1 0 1 ELMO3 chr16:67234095 3'AG 67234095 Downstream 43bp 38171 chr4 74607297 74607297 1 + C G BLCA 74607297 + 74607277 74607317 41 GTGCTAAAGAACTTAGATGTCAGTGCATAAAGACATACTCC GTGCTAAAGAACTTAGATGTGAGTGCATAAAGACATACTCC Direct Gain 0 0.923867999462161 NA NA prediction 0.847735998924321 Functional Gain - CXCL8 ENSG00000169429 CDS Human protein_coding chr4:74607297 chr4:74607297 nonsynonymous SNV 0.056 1 21 hm7G_associated_SNPs_41505 0 0 1 0 2 CXCL8 chr4:74607259 3'AG 74607259 Downstream 39bp 38172 chr4 74607297 74607297 1 + C G BLCA 74607297 + 74607277 74607317 41 GTGCTAAAGAACTTAGATGTCAGTGCATAAAGACATACTCC GTGCTAAAGAACTTAGATGTGAGTGCATAAAGACATACTCC Direct Gain 0 0.923867999462161 NA NA prediction 0.847735998924321 Functional Gain - CXCL8 ENSG00000169429 CDS Human protein_coding chr4:74607297 chr4:74607297 nonsynonymous SNV 0.056 1 21 hm7G_associated_SNPs_41505 0 0 1 0 2 CXCL8 chr4:74607394 5'GT 74607394 Upstream 98bp 38173 chr5 42762610 42762610 1 + A G rs147393952 42762610 + 42762590 42762630 41 TTGGAAAAAAGTAATTGCCTATTAAAAGTAATGCAAGCAAA TTGGAAAAAAGTAATTGCCTGTTAAAAGTAATGCAAGCAAA Direct Gain 0 0.923850872718671 NA NA prediction 0.847701745437342 Functional Gain - CCDC152 ENSG00000198865 CDS Human protein_coding chr5:42762610 chr5:42762610 synonymous SNV . 0 21 hm7G_associated_SNPs_41506 0 0 0 0 2 CCDC152 chr5:42762545 3'AG 42762545 Downstream 66bp 38174 chr5 42762610 42762610 1 + A G rs147393952 42762610 + 42762590 42762630 41 TTGGAAAAAAGTAATTGCCTATTAAAAGTAATGCAAGCAAA TTGGAAAAAAGTAATTGCCTGTTAAAAGTAATGCAAGCAAA Direct Gain 0 0.923850872718671 NA NA prediction 0.847701745437342 Functional Gain - CCDC152 ENSG00000198865 CDS Human protein_coding chr5:42762610 chr5:42762610 synonymous SNV . 0 21 hm7G_associated_SNPs_41506 0 0 0 0 2 CCDC152 chr5:42762650 5'GT 42762650 Upstream 41bp 38175 chr11 43333700 43333700 1 + A G UCEC 43333700 + 43333680 43333720 41 GCCGACAGTAGAGGAGCTTTACCGCAATTATGGCATCCTGG GCCGACAGTAGAGGAGCTTTGCCGCAATTATGGCATCCTGG Direct Gain 0 0.923837809794436 NA NA prediction 0.847675619588872 Functional Gain - API5 ENSG00000166181 CDS Human protein_coding chr11:43333700 chr11:43333700 nonsynonymous SNV 0.990 4 21 hm7G_associated_SNPs_41508 0 0 1 0 1 API5 chr11:43333746 5'GT 43333746 Upstream 47bp 38176 chrX 69500065 69500065 1 + A G UCEC 69500065 + 69500045 69500085 41 TATTAGACCGGGAATGGACAAAGAGCTGCTGGGGATCCTGG TATTAGACCGGGAATGGACAGAGAGCTGCTGGGGATCCTGG Direct Gain 0 0.923837234807962 NA NA prediction 0.847674469615924 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500065 chrX:69500065 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_41509 0 0 0 0 2 ARR3 chrX:69500045 3'AG 69500045 Downstream 21bp 38177 chrX 69500065 69500065 1 + A G UCEC 69500065 + 69500045 69500085 41 TATTAGACCGGGAATGGACAAAGAGCTGCTGGGGATCCTGG TATTAGACCGGGAATGGACAGAGAGCTGCTGGGGATCCTGG Direct Gain 0 0.923837234807962 NA NA prediction 0.847674469615924 Functional Gain - ARR3 ENSG00000120500 CDS Human protein_coding chrX:69500065 chrX:69500065 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_41509 0 0 0 0 2 ARR3 chrX:69500128 5'GT 69500128 Upstream 64bp 38178 chrX 154444801 154444801 1 + C G LIHC 154444801 + 154444781 154444821 41 TGTGGCAAAGGAGAAATGGCCACAGGGAATGGGCGGCGGCT TGTGGCAAAGGAGAAATGGCGACAGGGAATGGGCGGCGGCT Direct Gain 0 0.923826804849155 NA NA prediction 0.84765360969831 Functional Gain - VBP1 ENSG00000155959 CDS Human protein_coding chrX:154444801 chrX:154444801 synonymous SNV . 0 21 hm7G_associated_SNPs_41510 0 0 1 0 1 VBP1 chrX:154444852 5'GT 154444852 Upstream 52bp 38179 chr20 42232421 42232421 1 + C G LUAD 42232421 + 42232401 42232441 41 TTGAAATCCTGAAGAAATATCTTGACACTGGTGGAGATGTC TTGAAATCCTGAAGAAATATGTTGACACTGGTGGAGATGTC Direct Gain 0 0.92382088158228 NA NA prediction 0.84764176316456 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42232421 chr20:42232421 nonsynonymous SNV 0.783 2 21 hm7G_associated_SNPs_41511 0 0 1 5 1 IFT52 chr20:42232400 3'AG 42232400 Downstream 22bp 38180 chr8 103572771 103572771 1 + C G BLCA 103572771 + 103572751 103572791 41 TATGCGGTTTTGAACCCGATCAAGTCAAAGTTCGAGTGAAG TATGCGGTTTTGAACCCGATGAAGTCAAAGTTCGAGTGAAG Direct Gain 0 0.923797935714251 NA NA prediction 0.847595871428502 Functional Gain - ODF1 ENSG00000155087 CDS Human protein_coding chr8:103572771 chr8:103572771 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_41512 0 0 0 0 1 ODF1 chr8:103572680 3'AG 103572680 Downstream 92bp 38181 chr11 134104923 134104923 1 + A G UCEC 134104923 + 134104903 134104943 41 GGAGAAGCCGTATGAGTCCTACACAGGGCAGAATGTGAAGC GGAGAAGCCGTATGAGTCCTGCACAGGGCAGAATGTGAAGC Direct Gain 0 0.92377072922927 NA NA prediction 0.84754145845854 Functional Gain - VPS26B ENSG00000151502 CDS Human protein_coding chr11:134104923 chr11:134104923 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41514 0 0 1 0 1 VPS26B chr11:134104947 5'GT 134104947 Upstream 25bp 38182 chr1 26524839 26524839 1 + A G LGG 26524839 + 26524819 26524859 41 CCCAAGCATTTCCAGAACATACAGGTTGCGCTGTACACCCT CCCAAGCATTTCCAGAACATGCAGGTTGCGCTGTACACCCT Direct Gain 0 0.923768165587077 NA NA prediction 0.847536331174155 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524839 chr1:26524839 nonsynonymous SNV 0.811 1 21 hm7G_associated_SNPs_41515 0 0 0 0 3 CATSPER4 chr1:26524777 3'AG 26524777 Downstream 63bp 38183 chr1 26524839 26524839 1 + A G LGG 26524839 + 26524819 26524859 41 CCCAAGCATTTCCAGAACATACAGGTTGCGCTGTACACCCT CCCAAGCATTTCCAGAACATGCAGGTTGCGCTGTACACCCT Direct Gain 0 0.923768165587077 NA NA prediction 0.847536331174155 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524839 chr1:26524839 nonsynonymous SNV 0.811 1 21 hm7G_associated_SNPs_41515 0 0 0 0 3 CATSPER4 chr1:26524825 3'AG 26524825 Downstream 15bp 38184 chr1 26524839 26524839 1 + A G LGG 26524839 + 26524819 26524859 41 CCCAAGCATTTCCAGAACATACAGGTTGCGCTGTACACCCT CCCAAGCATTTCCAGAACATGCAGGTTGCGCTGTACACCCT Direct Gain 0 0.923768165587077 NA NA prediction 0.847536331174155 Functional Gain - CATSPER4 ENSG00000188782 CDS Human protein_coding chr1:26524839 chr1:26524839 nonsynonymous SNV 0.811 1 21 hm7G_associated_SNPs_41515 0 0 0 0 3 CATSPER4 chr1:26524910 5'GT 26524910 Upstream 72bp 38185 chr1 110231746 110231746 1 + A G rs147668562 110231746 + 110231726 110231766 41 CTACATTGCCCGCAAGCACAACCTGTGTGAGTGTGGGTGGC CTACATTGCCCGCAAGCACAGCCTGTGTGAGTGTGGGTGGC Direct Gain 0 0.923733106176288 NA NA prediction 0.847466212352576 Functional Gain - GSTM1 ENSG00000134184 CDS Human protein_coding chr1:110231746 chr1:110231746 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_41518 0 0 0 0 2 GSTM1 chr1:110231670 3'AG 110231670 Downstream 77bp 38186 chr1 110231746 110231746 1 + A G rs147668562 110231746 + 110231726 110231766 41 CTACATTGCCCGCAAGCACAACCTGTGTGAGTGTGGGTGGC CTACATTGCCCGCAAGCACAGCCTGTGTGAGTGTGGGTGGC Direct Gain 0 0.923733106176288 NA NA prediction 0.847466212352576 Functional Gain - GSTM1 ENSG00000134184 CDS Human protein_coding chr1:110231746 chr1:110231746 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_41518 0 0 0 0 2 GSTM1 chr1:110231751 5'GT 110231751 Upstream 6bp 38187 chr8 17491622 17491622 1 + C G LUAD 17491622 + 17491602 17491642 41 AACAACCATCTTGGCTTCTTCAAACAAAGTGAAAAGTGGGG AACAACCATCTTGGCTTCTTGAAACAAAGTGAAAAGTGGGG Direct Gain 0 0.923732197431125 NA NA prediction 0.84746439486225 Functional Gain - PDGFRL ENSG00000104213 CDS Human protein_coding chr8:17491622 chr8:17491622 stopgain 0.969 0 21 hm7G_associated_SNPs_41519 0 0 0 0 1 PDGFRL chr8:17491583 3'AG 17491583 Downstream 40bp 38188 chr2 159663591 159663591 1 + A G LUAD 159663591 + 159663571 159663611 41 ATTGCAAATGTTGCCAAAATACAGACACTGGATGCCCTGAA ATTGCAAATGTTGCCAAAATGCAGACACTGGATGCCCTGAA Direct Gain 0 0.923723615430617 NA NA prediction 0.847447230861233 Functional Gain - DAPL1 ENSG00000163331 CDS Human protein_coding chr2:159663591 chr2:159663591 nonsynonymous SNV 0.965 0 21 hm7G_associated_SNPs_41520 0 0 0 0 2 DAPL1 chr2:159663567 3'AG 159663567 Downstream 25bp 38189 chr2 159663591 159663591 1 + A G LUAD 159663591 + 159663571 159663611 41 ATTGCAAATGTTGCCAAAATACAGACACTGGATGCCCTGAA ATTGCAAATGTTGCCAAAATGCAGACACTGGATGCCCTGAA Direct Gain 0 0.923723615430617 NA NA prediction 0.847447230861233 Functional Gain - DAPL1 ENSG00000163331 CDS Human protein_coding chr2:159663591 chr2:159663591 nonsynonymous SNV 0.965 0 21 hm7G_associated_SNPs_41520 0 0 0 0 2 DAPL1 chr2:159663627 5'GT 159663627 Upstream 37bp 38190 chr4 88732540 88732540 1 + A G STAD 88732540 + 88732520 88732560 41 GATATAACAAATAAAGCTACAAAAGAGAAGGAAAGTGATGA GATATAACAAATAAAGCTACGAAAGAGAAGGAAAGTGATGA Direct Gain 0 0.923712062447078 NA NA prediction 0.847424124894156 Functional Gain - IBSP ENSG00000029559 CDS Human protein_coding chr4:88732540 chr4:88732540 synonymous SNV . 0 21 hm7G_associated_SNPs_41521 0 0 0 0 1 IBSP chr4:88732514 3'AG 88732514 Downstream 27bp 38191 chr1 171303853 171303853 1 + C G ESCA 171303853 + 171303833 171303873 41 ATCGGCCTTAAAGGATCCATCTTATCAGGCACAGAGCTCCA ATCGGCCTTAAAGGATCCATGTTATCAGGCACAGAGCTCCA Direct Gain 0 0.923710533265216 NA NA prediction 0.847421066530432 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171303853 chr1:171303853 nonsynonymous SNV 0.946 1 21 hm7G_associated_SNPs_41522 0 0 0 0 1 FMO4 chr1:171303902 5'GT 171303902 Upstream 50bp 38192 chrX 47101852 47101852 1 + C G SKCM 47101852 + 47101832 47101872 41 CCTTAGCACCGGCTCGTGGTCCCCAAGAAAGGCAAGATCTC CCTTAGCACCGGCTCGTGGTGCCCAAGAAAGGCAAGATCTC Direct Gain 0 0.923698942884337 NA NA prediction 0.847397885768673 Functional Gain - USP11 ENSG00000102226 CDS Human protein_coding chrX:47101852 chrX:47101852 synonymous SNV . 0 21 hm7G_associated_SNPs_41524 0 0 0 0 1 USP11 chrX:47101838 3'AG 47101838 Downstream 15bp 38193 chr6 127471641 127471641 1 + A G HNSC 127471641 + 127471621 127471661 41 TGTAAAAGTGGATTTTACTTACACCTTGGAAAGTGCCTTGA TGTAAAAGTGGATTTTACTTGCACCTTGGAAAGTGCCTTGA Direct Gain 0 0.923697932769223 NA NA prediction 0.847395865538446 Functional Gain - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127471641 chr6:127471641 synonymous SNV . 0 21 hm7G_associated_SNPs_41525 0 0 0 0 2 RSPO3 chr6:127471571 3'AG 127471571 Downstream 71bp 38194 chr6 127471641 127471641 1 + A G HNSC 127471641 + 127471621 127471661 41 TGTAAAAGTGGATTTTACTTACACCTTGGAAAGTGCCTTGA TGTAAAAGTGGATTTTACTTGCACCTTGGAAAGTGCCTTGA Direct Gain 0 0.923697932769223 NA NA prediction 0.847395865538446 Functional Gain - RSPO3 ENSG00000146374 CDS Human protein_coding chr6:127471641 chr6:127471641 synonymous SNV . 0 21 hm7G_associated_SNPs_41525 0 0 0 0 2 RSPO3 chr6:127471717 5'GT 127471717 Upstream 77bp 38195 chr10 114053530 114053530 1 + T G UCEC 114053530 + 114053510 114053550 41 CATCAAGAAAGAAGCTCCCTTTGTCCTGGAGGCATCCGAAA CATCAAGAAAGAAGCTCCCTGTGTCCTGGAGGCATCCGAAA Direct Gain 0 0.923690641970264 NA NA prediction 0.847381283940528 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053530 chr10:114053530 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41526 0 0 0 0 2 TECTB chr10:114053496 3'AG 114053496 Downstream 35bp 38196 chr10 114053530 114053530 1 + T G UCEC 114053530 + 114053510 114053550 41 CATCAAGAAAGAAGCTCCCTTTGTCCTGGAGGCATCCGAAA CATCAAGAAAGAAGCTCCCTGTGTCCTGGAGGCATCCGAAA Direct Gain 0 0.923690641970264 NA NA prediction 0.847381283940528 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053530 chr10:114053530 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41526 0 0 0 0 2 TECTB chr10:114053599 5'GT 114053599 Upstream 70bp 38197 chr5 173473778 173473778 1 + A G UCEC 173473778 + 173473758 173473798 41 GATGGTGAAGCTGAACAGTAACCCCAGCGAGAAGGGAACCA GATGGTGAAGCTGAACAGTAGCCCCAGCGAGAAGGGAACCA Direct Gain 0 0.923667926951011 NA NA prediction 0.847335853902021 Functional Gain - HMP19 ENSG00000170091 CDS Human protein_coding chr5:173473778 chr5:173473778 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_41527 0 0 0 0 1 HMP19 chr5:173473737 3'AG 173473737 Downstream 42bp 38198 chr3 113798838 113798838 1 + C G BLCA 113798838 + 113798818 113798858 41 TTGAGAGTTTTTTCCCTTATCAAGTAACAGAGCGGGGATGT TTGAGAGTTTTTTCCCTTATGAAGTAACAGAGCGGGGATGT Direct Gain 0 0.923664832937351 NA NA prediction 0.847329665874702 Functional Gain - QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113798838 chr3:113798838 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41528 0 0 1 0 2 QTRT2 chr3:113798753 3'AG 113798753 Downstream 86bp 38199 chr3 113798838 113798838 1 + C G BLCA 113798838 + 113798818 113798858 41 TTGAGAGTTTTTTCCCTTATCAAGTAACAGAGCGGGGATGT TTGAGAGTTTTTTCCCTTATGAAGTAACAGAGCGGGGATGT Direct Gain 0 0.923664832937351 NA NA prediction 0.847329665874702 Functional Gain - QTRT2 ENSG00000151576 CDS Human protein_coding chr3:113798838 chr3:113798838 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41528 0 0 1 0 2 QTRT2 chr3:113798904 5'GT 113798904 Upstream 67bp 38200 chr2 48033468 48033468 1 + C G LUAD 48033468 + 48033448 48033488 41 CATTAGTAGAAGATTATTCTCAAAATGTTGCTGTGCGCCTA CATTAGTAGAAGATTATTCTGAAAATGTTGCTGTGCGCCTA Direct Gain 0 0.923647353655538 NA NA prediction 0.847294707311076 Functional Gain - MSH6 ENSG00000116062 CDS Human protein_coding chr2:48033468 chr2:48033468 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41530 3 0 1 0 1 MSH6 chr2:48033497 5'GT 48033497 Upstream 30bp 38201 chr12 16189270 16189270 1 + C G BLCA 16189270 + 16189250 16189290 41 GAGTGGCTGAAGCCAGAACTCTTTCGAATAGGTGCCAGTAC GAGTGGCTGAAGCCAGAACTGTTTCGAATAGGTGCCAGTAC Direct Gain 0 0.923641479250027 NA NA prediction 0.847282958500054 Functional Gain - DERA ENSG00000023697 CDS Human protein_coding chr12:16189270 chr12:16189270 synonymous SNV . 0 21 hm7G_associated_SNPs_41531 0 0 0 0 1 DERA chr12:16189315 5'GT 16189315 Upstream 46bp 38202 chr7 930603 930603 1 + T G LIHC 930603 + 930583 930623 41 CGAGGTATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGT CGAGGTATCATTTTCTGCACGCAGCGGACGGGGAGGGCTGT Direct Gain 0 0.923640030547221 NA NA prediction 0.847280061094443 Functional Gain - GET4 ENSG00000239857 CDS Human protein_coding chr7:930603 chr7:930603 nonsynonymous SNV 0.758 2 21 hm7G_associated_SNPs_41532 0 0 1 0 1 GET4 chr7:930565 3'AG 930565 Downstream 39bp 38203 chr5 154251406 154251406 1 + A G UCEC 154251406 + 154251386 154251426 41 ATCCATTTATGATGTGAAATACCTGATGAAGAGCTGCAAAA ATCCATTTATGATGTGAAATGCCTGATGAAGAGCTGCAAAA Direct Gain 0 0.923626089466979 NA NA prediction 0.847252178933959 Functional Gain - CNOT8 ENSG00000155508 CDS Human protein_coding chr5:154251406 chr5:154251406 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_41533 0 0 1 0 1 CNOT8 chr5:154251434 5'GT 154251434 Upstream 29bp 38204 chr12 51634238 51634238 1 + A G ESCA 51634238 + 51634218 51634258 41 TACCGATGCTCCACCTGCCTACTCAGAGGTGCTTCCAGTTT TACCGATGCTCCACCTGCCTGCTCAGAGGTGCTTCCAGTTT Direct Gain 0 0.923616174460462 NA NA prediction 0.847232348920924 Functional Gain - DAZAP2 ENSG00000183283 CDS Human protein_coding chr12:51634238 chr12:51634238 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41534 0 0 1 0 1 DAZAP2 chr12:51634245 5'GT 51634245 Upstream 8bp 38205 chr2 190327286 190327286 1 + T G UCEC 190327286 + 190327266 190327306 41 ACAGAGAAGAATAAGGAGTTTCTCCCGCGTTTAGGAGCTAC ACAGAGAAGAATAAGGAGTTGCTCCCGCGTTTAGGAGCTAC Direct Gain 0 0.923596157796365 NA NA prediction 0.847192315592731 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190327286 chr2:190327286 nonsynonymous SNV 0.952 4 21 hm7G_associated_SNPs_41536 0 0 1 0 2 WDR75 chr2:190327210 3'AG 190327210 Downstream 77bp 38206 chr2 190327286 190327286 1 + T G UCEC 190327286 + 190327266 190327306 41 ACAGAGAAGAATAAGGAGTTTCTCCCGCGTTTAGGAGCTAC ACAGAGAAGAATAAGGAGTTGCTCCCGCGTTTAGGAGCTAC Direct Gain 0 0.923596157796365 NA NA prediction 0.847192315592731 Functional Gain - WDR75 ENSG00000115368 CDS Human protein_coding chr2:190327286 chr2:190327286 nonsynonymous SNV 0.952 4 21 hm7G_associated_SNPs_41536 0 0 1 0 2 WDR75 chr2:190327368 5'GT 190327368 Upstream 83bp 38207 chr8 42022600 42022600 1 + A G UCEC 42022600 + 42022580 42022620 41 CTGTCTCAGGCTCCACAATTACTGCTGAGATCCAGGGGGTG CTGTCTCAGGCTCCACAATTGCTGCTGAGATCCAGGGGGTG Direct Gain 0 0.923575757547186 NA NA prediction 0.847151515094373 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42022600 chr8:42022600 nonsynonymous SNV 0.836 1 21 hm7G_associated_SNPs_41537 0 0 1 0 2 AP3M2 chr8:42022589 3'AG 42022589 Downstream 12bp 38208 chr8 42022600 42022600 1 + A G UCEC 42022600 + 42022580 42022620 41 CTGTCTCAGGCTCCACAATTACTGCTGAGATCCAGGGGGTG CTGTCTCAGGCTCCACAATTGCTGCTGAGATCCAGGGGGTG Direct Gain 0 0.923575757547186 NA NA prediction 0.847151515094373 Functional Gain - AP3M2 ENSG00000070718 CDS Human protein_coding chr8:42022600 chr8:42022600 nonsynonymous SNV 0.836 1 21 hm7G_associated_SNPs_41537 0 0 1 0 2 AP3M2 chr8:42022674 5'GT 42022674 Upstream 75bp 38209 chr19 12918083 12918083 1 + T G SKCM 12918083 + 12918063 12918103 41 GAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATG GAAAATGGAGGACACGGACTGTGTCGGCTGGGCGCTGGATG Direct Gain 0 0.923565270370988 NA NA prediction 0.847130540741977 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12918083 chr19:12918083 nonsynonymous SNV 0.988 2 21 hm7G_associated_SNPs_41538 0 0 1 0 2 RNASEH2A chr19:12918020 3'AG 12918020 Downstream 64bp 38210 chr19 12918083 12918083 1 + T G SKCM 12918083 + 12918063 12918103 41 GAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATG GAAAATGGAGGACACGGACTGTGTCGGCTGGGCGCTGGATG Direct Gain 0 0.923565270370988 NA NA prediction 0.847130540741977 Functional Gain - RNASEH2A ENSG00000104889 CDS Human protein_coding chr19:12918083 chr19:12918083 nonsynonymous SNV 0.988 2 21 hm7G_associated_SNPs_41538 0 0 1 0 2 RNASEH2A chr19:12918143 5'GT 12918143 Upstream 61bp 38211 chr15 74178859 74178859 1 + A G rs569820964 74178859 + 74178839 74178879 41 TTCTCTCCCCACAGAAGGGAAGGGTGCAGGGGCTGTGCAGT TTCTCTCCCCACAGAAGGGAGGGGTGCAGGGGCTGTGCAGT Direct Gain 0 0.923564170953175 NA NA prediction 0.847128341906351 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178859 chr15:74178859 nonsynonymous SNV 0.983 0 21 hm7G_associated_SNPs_41539 0 0 0 0 2 TBC1D21 chr15:74178853 3'AG 74178853 Downstream 7bp 38212 chr15 74178859 74178859 1 + A G rs569820964 74178859 + 74178839 74178879 41 TTCTCTCCCCACAGAAGGGAAGGGTGCAGGGGCTGTGCAGT TTCTCTCCCCACAGAAGGGAGGGGTGCAGGGGCTGTGCAGT Direct Gain 0 0.923564170953175 NA NA prediction 0.847128341906351 Functional Gain - TBC1D21 ENSG00000167139 CDS Human protein_coding chr15:74178859 chr15:74178859 nonsynonymous SNV 0.983 0 21 hm7G_associated_SNPs_41539 0 0 0 0 2 TBC1D21 chr15:74178953 5'GT 74178953 Upstream 95bp 38213 chr2 187371499 187371499 1 + A G LUAD 187371499 + 187371479 187371519 41 CTGTACATCCCAAGAGATGTAGATGAAACAGGTATTACTGT CTGTACATCCCAAGAGATGTGGATGAAACAGGTATTACTGT Direct Gain 0 0.923562012059286 NA NA prediction 0.847124024118571 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187371499 chr2:187371499 synonymous SNV . 0 21 hm7G_associated_SNPs_41540 0 0 1 0 2 ZC3H15 chr2:187371440 3'AG 187371440 Downstream 60bp 38214 chr2 187371499 187371499 1 + A G LUAD 187371499 + 187371479 187371519 41 CTGTACATCCCAAGAGATGTAGATGAAACAGGTATTACTGT CTGTACATCCCAAGAGATGTGGATGAAACAGGTATTACTGT Direct Gain 0 0.923562012059286 NA NA prediction 0.847124024118571 Functional Gain - ZC3H15 ENSG00000065548 CDS Human protein_coding chr2:187371499 chr2:187371499 synonymous SNV . 0 21 hm7G_associated_SNPs_41540 0 0 1 0 2 ZC3H15 chr2:187371563 5'GT 187371563 Upstream 65bp 38215 chr1 151089909 151089909 1 + A G STAD 151089909 + 151089889 151089929 41 AGGTTGCAGAGGAGACTGTAATTAAAGAGGAAGAAGAAGAG AGGTTGCAGAGGAGACTGTAGTTAAAGAGGAAGAAGAAGAG Direct Gain 0 0.923561086870601 NA NA prediction 0.847122173741202 Functional Gain - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151089909 chr1:151089909 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_41542 0 0 1 0 2 GABPB2 chr1:151089868 3'AG 151089868 Downstream 42bp 38216 chr1 151089909 151089909 1 + A G STAD 151089909 + 151089889 151089929 41 AGGTTGCAGAGGAGACTGTAATTAAAGAGGAAGAAGAAGAG AGGTTGCAGAGGAGACTGTAGTTAAAGAGGAAGAAGAAGAG Direct Gain 0 0.923561086870601 NA NA prediction 0.847122173741202 Functional Gain - GABPB2 ENSG00000143458 CDS Human protein_coding chr1:151089909 chr1:151089909 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_41542 0 0 1 0 2 GABPB2 chr1:151089992 5'GT 151089992 Upstream 84bp 38217 chr3 141622545 141622545 1 + C G HNSC 141622545 + 141622525 141622565 41 TGTGGGTTATGCTTCAGACTCTCAACGATGAGGTTCCAAAA TGTGGGTTATGCTTCAGACTGTCAACGATGAGGTTCCAAAA Direct Gain 0 0.923512866772396 NA NA prediction 0.847025733544793 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141622545 chr3:141622545 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_41545 0 0 1 0 2 ATP1B3 chr3:141622462 3'AG 141622462 Downstream 84bp 38218 chr3 141622545 141622545 1 + C G HNSC 141622545 + 141622525 141622565 41 TGTGGGTTATGCTTCAGACTCTCAACGATGAGGTTCCAAAA TGTGGGTTATGCTTCAGACTGTCAACGATGAGGTTCCAAAA Direct Gain 0 0.923512866772396 NA NA prediction 0.847025733544793 Functional Gain - ATP1B3 ENSG00000069849 CDS Human protein_coding chr3:141622545 chr3:141622545 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_41545 0 0 1 0 2 ATP1B3 chr3:141622590 5'GT 141622590 Upstream 46bp 38219 chr4 159627834 159627834 1 + C G HNSC 159627834 + 159627814 159627854 41 ATTGCACACCTATTGAGTATCCAAAACCCGATGGACAGATC ATTGCACACCTATTGAGTATGCAAAACCCGATGGACAGATC Direct Gain 0 0.923510174253952 NA NA prediction 0.847020348507904 Functional Gain - ETFDH ENSG00000171503 CDS Human protein_coding chr4:159627834 chr4:159627834 nonsynonymous SNV 0.996 5 21 hm7G_associated_SNPs_41546 0 0 0 0 1 ETFDH chr4:159627781 3'AG 159627781 Downstream 54bp 38220 chrX 108779158 108779158 1 + A G UCEC 108779158 + 108779138 108779178 41 TCAGGGAGACAGAGAAGGATACCAAAGAAGAAGTAACTATT TCAGGGAGACAGAGAAGGATGCCAAAGAAGAAGTAACTATT Direct Gain 0 0.92350368144647 NA NA prediction 0.847007362892939 Functional Gain - NXT2 ENSG00000101888 CDS Human protein_coding chrX:108779158 chrX:108779158 nonsynonymous SNV 0.012 0 21 hm7G_associated_SNPs_41548 0 0 0 0 1 NXT2 chrX:108779206 5'GT 108779206 Upstream 49bp 38221 chr16 67200484 67200484 1 + A G HNSC 67200484 + 67200464 67200504 41 ATCCAGTGTCTCTTTGGGCCACTTCAGGCGGGGCCGAGCAA ATCCAGTGTCTCTTTGGGCCGCTTCAGGCGGGGCCGAGCAA Direct Gain 0 0.923502143131563 NA NA prediction 0.847004286263126 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67200484 chr16:67200484 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_41550 0 0 1 0 2 HSF4 chr16:67200461 3'AG 67200461 Downstream 24bp 38222 chr16 67200484 67200484 1 + A G HNSC 67200484 + 67200464 67200504 41 ATCCAGTGTCTCTTTGGGCCACTTCAGGCGGGGCCGAGCAA ATCCAGTGTCTCTTTGGGCCGCTTCAGGCGGGGCCGAGCAA Direct Gain 0 0.923502143131563 NA NA prediction 0.847004286263126 Functional Gain - HSF4 ENSG00000102878 CDS Human protein_coding chr16:67200484 chr16:67200484 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_41550 0 0 1 0 2 HSF4 chr16:67200525 5'GT 67200525 Upstream 42bp 38223 chr2 98351734 98351734 1 + C G LUSC 98351734 + 98351714 98351754 41 AAGCAGATCGACGTGGCCATCAAGGTGCTGAAGCAGGGCAC AAGCAGATCGACGTGGCCATGAAGGTGCTGAAGCAGGGCAC Direct Gain 0 0.923468295535264 NA NA prediction 0.846936591070529 Functional Gain - ZAP70 ENSG00000115085 CDS Human protein_coding chr2:98351734 chr2:98351734 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_41551 0 0 0 0 1 ZAP70 chr2:98351713 3'AG 98351713 Downstream 22bp 38224 chr5 6753031 6753031 1 + C G SARC 6753031 + 6753011 6753051 41 CCCTAGGGGTTGCTCCTGTTCCTTGCAGACAAGCTGGTGTA CCCTAGGGGTTGCTCCTGTTGCTTGCAGACAAGCTGGTGTA Direct Gain 0 0.923464506722001 NA NA prediction 0.846929013444002 Functional Gain - PAPD7 ENSG00000112941 CDS Human protein_coding chr5:6753031 chr5:6753031 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_41552 0 0 1 0 1 PAPD7 chr5:6752986 3'AG 6752986 Downstream 46bp 38225 chr5 94785929 94785929 1 + A G LIHC 94785929 + 94785909 94785949 41 ATGGATTTAGAGAAATATAAAGTACAGAAAGACCTAAAGAA ATGGATTTAGAGAAATATAAGGTACAGAAAGACCTAAAGAA Direct Gain 0 0.923442527265842 NA NA prediction 0.846885054531685 Functional Gain - FAM81B ENSG00000153347 CDS Human protein_coding chr5:94785929 chr5:94785929 synonymous SNV . 0 21 hm7G_associated_SNPs_41555 0 0 0 3 1 FAM81B chr5:94785853 3'AG 94785853 Downstream 77bp 38226 chr9 27192585 27192585 1 + C G THCA 27192585 + 27192565 27192605 41 GAGAGGGTGGGGAAGGGCATCCTGGACCTGTGAGACGCTTC GAGAGGGTGGGGAAGGGCATGCTGGACCTGTGAGACGCTTC Direct Gain 0 0.923442185586187 NA NA prediction 0.846884371172375 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27192585 chr9:27192585 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_41556 0 0 0 0 2 TEK chr9:27192487 3'AG 27192487 Downstream 99bp 38227 chr9 27192585 27192585 1 + C G THCA 27192585 + 27192565 27192605 41 GAGAGGGTGGGGAAGGGCATCCTGGACCTGTGAGACGCTTC GAGAGGGTGGGGAAGGGCATGCTGGACCTGTGAGACGCTTC Direct Gain 0 0.923442185586187 NA NA prediction 0.846884371172375 Functional Gain - TEK ENSG00000120156 CDS Human protein_coding chr9:27192585 chr9:27192585 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_41556 0 0 0 0 2 TEK chr9:27192621 5'GT 27192621 Upstream 37bp 38228 chr1 44685131 44685131 1 + C G HNSC 44685131 + 44685111 44685151 41 GACTTCAAGTCTGCAGGTGTCACGCTGCGGAGCCAACGGGT GACTTCAAGTCTGCAGGTGTGACGCTGCGGAGCCAACGGGT Direct Gain 0 0.92343113647901 NA NA prediction 0.846862272958019 Functional Gain - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44685131 chr1:44685131 synonymous SNV . 0 21 hm7G_associated_SNPs_41557 0 0 1 0 2 DMAP1 chr1:44685078 3'AG 44685078 Downstream 54bp 38229 chr1 44685131 44685131 1 + C G HNSC 44685131 + 44685111 44685151 41 GACTTCAAGTCTGCAGGTGTCACGCTGCGGAGCCAACGGGT GACTTCAAGTCTGCAGGTGTGACGCTGCGGAGCCAACGGGT Direct Gain 0 0.92343113647901 NA NA prediction 0.846862272958019 Functional Gain - DMAP1 ENSG00000178028 CDS Human protein_coding chr1:44685131 chr1:44685131 synonymous SNV . 0 21 hm7G_associated_SNPs_41557 0 0 1 0 2 DMAP1 chr1:44685149 5'GT 44685149 Upstream 19bp 38230 chr18 48452221 48452221 1 + A G UCEC 48452221 + 48452201 48452241 41 TATTTGCATTAAGTAATCCTACAGCACAGGCAGAGTGCACG TATTTGCATTAAGTAATCCTGCAGCACAGGCAGAGTGCACG Direct Gain 0 0.923421900686403 NA NA prediction 0.846843801372807 Functional Gain - ME2 ENSG00000082212 CDS Human protein_coding chr18:48452221 chr18:48452221 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_41559 0 0 1 0 2 ME2 chr18:48452126 3'AG 48452126 Downstream 96bp 38231 chr18 48452221 48452221 1 + A G UCEC 48452221 + 48452201 48452241 41 TATTTGCATTAAGTAATCCTACAGCACAGGCAGAGTGCACG TATTTGCATTAAGTAATCCTGCAGCACAGGCAGAGTGCACG Direct Gain 0 0.923421900686403 NA NA prediction 0.846843801372807 Functional Gain - ME2 ENSG00000082212 CDS Human protein_coding chr18:48452221 chr18:48452221 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_41559 0 0 1 0 2 ME2 chr18:48452268 5'GT 48452268 Upstream 48bp 38232 chr6 96971131 96971131 1 + A G HNSC 96971131 + 96971111 96971151 41 ATATTACTCCAGCCCAAATTAGTAAAGAAATGAGAGATGAG ATATTACTCCAGCCCAAATTGGTAAAGAAATGAGAGATGAG Direct Gain 0 0.923344060025242 NA NA prediction 0.846688120050484 Functional Gain - UFL1 ENSG00000014123 CDS Human protein_coding chr6:96971131 chr6:96971131 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41564 0 0 0 1 1 UFL1 chr6:96971167 5'GT 96971167 Upstream 37bp 38233 chr16 314143 314143 1 + C G rs149439168 314143 + 314123 314163 41 GCCTTCTTCTTCTGGGGCCTCCACGAGCTGGGGAGCACCAG GCCTTCTTCTTCTGGGGCCTGCACGAGCTGGGGAGCACCAG Direct Gain 0 0.923322443028502 NA NA prediction 0.846644886057004 Functional Gain - FAM234A ENSG00000167930;ENSG00000269881 CDS Human other chr16:314143 chr16:314143 synonymous SNV . 0 21 hm7G_associated_SNPs_41567 0 0 0 0 1 FAM234A chr16:314170 5'GT 314170 Upstream 28bp 38234 chr5 162918123 162918123 1 + A G UCEC 162918123 + 162918103 162918143 41 CAATAATTCTTCTAGGCAATACAAACTGTTACCGAGCTCCT CAATAATTCTTCTAGGCAATGCAAACTGTTACCGAGCTCCT Direct Gain 0 0.923291467369472 NA NA prediction 0.846582934738944 Functional Gain - HMMR ENSG00000072571 CDS Human protein_coding chr5:162918123 chr5:162918123 nonsynonymous SNV 0.705 0 21 hm7G_associated_SNPs_41570 0 0 1 0 1 HMMR chr5:162918118 3'AG 162918118 Downstream 6bp 38235 chr7 35943875 35943875 1 + A G UCEC 35943875 + 35943855 35943895 41 ATCCTTTAGAACCTTGGAAAAGAACAAGAAGAAAGGGAAGA ATCCTTTAGAACCTTGGAAAGGAACAAGAAGAAAGGGAAGA Direct Gain 0 0.923276353994585 NA NA prediction 0.84655270798917 Functional Gain - SEPT7 ENSG00000122545 CDS Human protein_coding chr7:35943875 chr7:35943875 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41572 0 0 1 0 1 SEPT7 chr7:35943864 3'AG 35943864 Downstream 12bp 38236 chrX 152772366 152772366 1 + A G UCEC 152772366 + 152772346 152772386 41 ACTGGAGGACCTGCTTCGCTACTCCAAGCTGTACAGGTGAG ACTGGAGGACCTGCTTCGCTGCTCCAAGCTGTACAGGTGAG Direct Gain 0 0.923222998561686 NA NA prediction 0.846445997123372 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152772366 chrX:152772366 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41577 0 0 0 1 2 BGN chrX:152772288 3'AG 152772288 Downstream 79bp 38237 chrX 152772366 152772366 1 + A G UCEC 152772366 + 152772346 152772386 41 ACTGGAGGACCTGCTTCGCTACTCCAAGCTGTACAGGTGAG ACTGGAGGACCTGCTTCGCTGCTCCAAGCTGTACAGGTGAG Direct Gain 0 0.923222998561686 NA NA prediction 0.846445997123372 Functional Gain - BGN ENSG00000182492 CDS Human protein_coding chrX:152772366 chrX:152772366 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41577 0 0 0 1 2 BGN chrX:152772381 5'GT 152772381 Upstream 16bp 38238 chr2 191524715 191524715 1 + T G LUSC 191524715 + 191524695 191524735 41 GATGGGAAACATCTCACACTTCATGAGGTACAAAGCCCGCG GATGGGAAACATCTCACACTGCATGAGGTACAAAGCCCGCG Direct Gain 0 0.923219440244809 NA NA prediction 0.846438880489618 Functional Gain - NAB1 ENSG00000138386 CDS Human protein_coding chr2:191524715 chr2:191524715 synonymous SNV . 0 21 hm7G_associated_SNPs_41578 0 0 0 0 1 NAB1 chr2:191524721 5'GT 191524721 Upstream 7bp 38239 chr12 58112069 58112069 1 + A G rs187197216 58112069 + 58112049 58112089 41 GAGGATGAGGATGAGGATGAAGATGAGGATGAACGGCAGTT GAGGATGAGGATGAGGATGAGGATGAGGATGAACGGCAGTT Direct Gain 0 0.923216297515566 NA NA prediction 0.846432595031132 Functional Gain - OS9 ENSG00000135506 CDS Human protein_coding chr12:58112069 chr12:58112069 synonymous SNV . 0 21 hm7G_associated_SNPs_41579 0 0 1 0 1 OS9 chr12:58112159 5'GT 58112159 Upstream 91bp 38240 chr1 36055642 36055642 1 + A G UCEC 36055642 + 36055622 36055662 41 GTGACGCTGCTGACTTCGCTAGTGGAAGGTGAGTGAGGCCT GTGACGCTGCTGACTTCGCTGGTGGAAGGTGAGTGAGGCCT Direct Gain 0 0.923214507418013 NA NA prediction 0.846429014836025 Functional Gain - TFAP2E ENSG00000116819 CDS Human protein_coding chr1:36055642 chr1:36055642 synonymous SNV . 0 21 hm7G_associated_SNPs_41580 0 0 0 0 1 TFAP2E chr1:36055649 5'GT 36055649 Upstream 8bp 38241 chr8 79510760 79510760 1 + C G OV 79510760 + 79510740 79510780 41 AAATTAGCAGGTCTTGATATCAACAAGACAGGTAAGTCATC AAATTAGCAGGTCTTGATATGAACAAGACAGGTAAGTCATC Direct Gain 0 0.923208765886897 NA NA prediction 0.846417531773793 Functional Gain - PKIA ENSG00000171033 CDS Human protein_coding chr8:79510760 chr8:79510760 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41581 0 0 1 0 1 PKIA chr8:79510770 5'GT 79510770 Upstream 11bp 38242 chr9 33030454 33030454 1 + A G HNSC 33030454 + 33030434 33030474 41 TTAGGTAGAGGAGGTAAGAAAGGAGCAGTAGAGTGCTGTCC TTAGGTAGAGGAGGTAAGAAGGGAGCAGTAGAGTGCTGTCC Direct Gain 0 0.923195885243985 NA NA prediction 0.846391770487969 Functional Gain - DNAJA1 ENSG00000086061 CDS Human protein_coding chr9:33030454 chr9:33030454 synonymous SNV . 0 21 hm7G_associated_SNPs_41582 0 0 1 0 1 DNAJA1 chr9:33030438 3'AG 33030438 Downstream 17bp 38243 chr1 184476758 184476758 1 + A G UCEC 184476758 + 184476738 184476778 41 ACCAGTGGAAGAGGTCAAATACATGAAAAATGGGGCAGAAG ACCAGTGGAAGAGGTCAAATGCATGAAAAATGGGGCAGAAG Direct Gain 0 0.92316710503148 NA NA prediction 0.846334210062959 Functional Gain - C1orf21 ENSG00000116667 CDS Human protein_coding chr1:184476758 chr1:184476758 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41584 0 0 0 0 2 C1orf21 chr1:184476722 3'AG 184476722 Downstream 37bp 38244 chr1 184476758 184476758 1 + A G UCEC 184476758 + 184476738 184476778 41 ACCAGTGGAAGAGGTCAAATACATGAAAAATGGGGCAGAAG ACCAGTGGAAGAGGTCAAATGCATGAAAAATGGGGCAGAAG Direct Gain 0 0.92316710503148 NA NA prediction 0.846334210062959 Functional Gain - C1orf21 ENSG00000116667 CDS Human protein_coding chr1:184476758 chr1:184476758 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41584 0 0 0 0 2 C1orf21 chr1:184476816 5'GT 184476816 Upstream 59bp 38245 chr12 69050130 69050130 1 + A G SKCM 69050130 + 69050110 69050150 41 AAGTGTGACTTGGAAGATGAAAGAGTTGTAGGGAAGGAACA AAGTGTGACTTGGAAGATGAGAGAGTTGTAGGGAAGGAACA Direct Gain 0 0.92313792002379 NA NA prediction 0.84627584004758 Functional Gain - RAP1B ENSG00000127314 CDS Human protein_coding chr12:69050130 chr12:69050130 synonymous SNV . 0 21 hm7G_associated_SNPs_41586 0 0 0 0 2 RAP1B chr12:69050086 3'AG 69050086 Downstream 45bp 38246 chr12 69050130 69050130 1 + A G SKCM 69050130 + 69050110 69050150 41 AAGTGTGACTTGGAAGATGAAAGAGTTGTAGGGAAGGAACA AAGTGTGACTTGGAAGATGAGAGAGTTGTAGGGAAGGAACA Direct Gain 0 0.92313792002379 NA NA prediction 0.84627584004758 Functional Gain - RAP1B ENSG00000127314 CDS Human protein_coding chr12:69050130 chr12:69050130 synonymous SNV . 0 21 hm7G_associated_SNPs_41586 0 0 0 0 2 RAP1B chr12:69050229 5'GT 69050229 Upstream 100bp 38247 chr18 29100815 29100815 1 + A G rs2230232 29100815 + 29100795 29100835 41 ACTCAAAATTACTTACAAATACACTGGAAAAGGGATTACAG ACTCAAAATTACTTACAAATGCACTGGAAAAGGGATTACAG Direct Gain 0 0.923133511452198 NA NA prediction 0.846267022904397 Functional Gain - DSG2 ENSG00000046604 CDS Human protein_coding chr18:29100815 chr18:29100815 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_41587 2 0 1 0 1 DSG2 chr18:29100766 3'AG 29100766 Downstream 50bp 38248 chrX 100646777 100646777 1 + T G CHOL 100646777 + 100646757 100646797 41 GACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCCGAT GACAGGAAGCAGAGTGGCTAGGGTGGGCAAACTAAGCCGAT Direct Gain 0 0.923117742923064 NA NA prediction 0.846235485846129 Functional Gain - RPL36A;RPL36A-HNRNPH2 ENSG00000241343;ENSG00000257529 CDS Human other chrX:100646777 chrX:100646777 stopgain 1.000 0 21 hm7G_associated_SNPs_41588 0 0 1 0 2 RPL36A;RPL36A-HNRNPH2 chrX:100646743 3'AG 100646743 Downstream 35bp 38249 chrX 100646777 100646777 1 + T G CHOL 100646777 + 100646757 100646797 41 GACAGGAAGCAGAGTGGCTATGGTGGGCAAACTAAGCCGAT GACAGGAAGCAGAGTGGCTAGGGTGGGCAAACTAAGCCGAT Direct Gain 0 0.923117742923064 NA NA prediction 0.846235485846129 Functional Gain - RPL36A;RPL36A-HNRNPH2 ENSG00000241343;ENSG00000257529 CDS Human other chrX:100646777 chrX:100646777 stopgain 1.000 0 21 hm7G_associated_SNPs_41588 0 0 1 0 2 RPL36A;RPL36A-HNRNPH2 chrX:100646810 5'GT 100646810 Upstream 34bp 38250 chrX 21581449 21581449 1 + C G STAD 21581449 + 21581429 21581469 41 AAAGGACACAGGGAAGAAGTCAAAAAAGAAGGGTGATAAGA AAAGGACACAGGGAAGAAGTGAAAAAAGAAGGGTGATAAGA Direct Gain 0 0.92311576414376 NA NA prediction 0.846231528287519 Functional Gain - CNKSR2 ENSG00000149970 CDS Human protein_coding chrX:21581449 chrX:21581449 stopgain 1.000 1 21 hm7G_associated_SNPs_41589 0 0 1 0 1 CNKSR2 chrX:21581356 3'AG 21581356 Downstream 94bp 38251 chr11 117030674 117030674 1 + A G UCEC 117030674 + 117030654 117030694 41 ACAGATTTGTTTTGGACTGTAAAGACAAAGAGCCTGATGTA ACAGATTTGTTTTGGACTGTGAAGACAAAGAGCCTGATGTA Direct Gain 0 0.923107978158457 NA NA prediction 0.846215956316914 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117030674 chr11:117030674 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41590 0 0 1 2 2 PAFAH1B2 chr11:117030650 3'AG 117030650 Downstream 25bp 38252 chr11 117030674 117030674 1 + A G UCEC 117030674 + 117030654 117030694 41 ACAGATTTGTTTTGGACTGTAAAGACAAAGAGCCTGATGTA ACAGATTTGTTTTGGACTGTGAAGACAAAGAGCCTGATGTA Direct Gain 0 0.923107978158457 NA NA prediction 0.846215956316914 Functional Gain - PAFAH1B2 ENSG00000168092 CDS Human protein_coding chr11:117030674 chr11:117030674 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41590 0 0 1 2 2 PAFAH1B2 chr11:117030739 5'GT 117030739 Upstream 66bp 38253 chr2 17773470 17773470 1 + A G KIRC 17773470 + 17773450 17773490 41 GACTGTCCAAGTGGGAGGCTAAATCTCGAGGAATTTCAGCA GACTGTCCAAGTGGGAGGCTGAATCTCGAGGAATTTCAGCA Direct Gain 0 0.923080783214171 NA NA prediction 0.846161566428342 Functional Gain - VSNL1 ENSG00000163032 CDS Human protein_coding chr2:17773470 chr2:17773470 synonymous SNV . 0 21 hm7G_associated_SNPs_41592 0 0 1 0 1 VSNL1 chr2:17773503 5'GT 17773503 Upstream 34bp 38254 chr10 71853494 71853494 1 + A G LAML 71853494 + 71853474 71853514 41 TTGATTTTTACCGACAGTCCAAACCAAAGGACAGCGATAAA TTGATTTTTACCGACAGTCCGAACCAAAGGACAGCGATAAA Direct Gain 0 0.923072926229619 NA NA prediction 0.846145852459238 Functional Gain - H2AFY2 ENSG00000099284 CDS Human protein_coding chr10:71853494 chr10:71853494 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41594 0 0 1 1 1 H2AFY2 chr10:71853491 3'AG 71853491 Downstream 4bp 38255 chr1 156552222 156552222 1 + A G LIHC 156552222 + 156552202 156552242 41 CACCAGAAGGCTGCTGACCTACACGGTGGGTGCCTGGGGCC CACCAGAAGGCTGCTGACCTGCACGGTGGGTGCCTGGGGCC Direct Gain 0 0.923034111577008 NA NA prediction 0.846068223154015 Functional Gain - TTC24 ENSG00000187862 CDS Human protein_coding chr1:156552222 chr1:156552222 synonymous SNV . 0 21 hm7G_associated_SNPs_41596 0 0 0 0 1 TTC24 chr1:156552226 5'GT 156552226 Upstream 5bp 38256 chr12 8245311 8245311 1 + A G DLBC 8245311 + 8245291 8245331 41 GAGATTTCCAAGGAATCTCAAGAAATGGATGCTCGTCCTAA GAGATTTCCAAGGAATCTCAGGAAATGGATGCTCGTCCTAA Direct Gain 0 0.923027999681312 NA NA prediction 0.846055999362623 Functional Gain - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8245311 chr12:8245311 synonymous SNV . 0 21 hm7G_associated_SNPs_41597 0 0 0 0 2 NECAP1 chr12:8245272 3'AG 8245272 Downstream 40bp 38257 chr12 8245311 8245311 1 + A G DLBC 8245311 + 8245291 8245331 41 GAGATTTCCAAGGAATCTCAAGAAATGGATGCTCGTCCTAA GAGATTTCCAAGGAATCTCAGGAAATGGATGCTCGTCCTAA Direct Gain 0 0.923027999681312 NA NA prediction 0.846055999362623 Functional Gain - NECAP1 ENSG00000089818 CDS Human protein_coding chr12:8245311 chr12:8245311 synonymous SNV . 0 21 hm7G_associated_SNPs_41597 0 0 0 0 2 NECAP1 chr12:8245380 5'GT 8245380 Upstream 70bp 38258 chr2 67626314 67626314 1 + A G ESCA 67626314 + 67626294 67626334 41 TATATAGAAAGGTATGAAACACCAAAGAGAGCGCTGAAAAT TATATAGAAAGGTATGAAACGCCAAAGAGAGCGCTGAAAAT Direct Gain 0 0.923022568807947 NA NA prediction 0.846045137615894 Functional Gain - ETAA1 ENSG00000143971 CDS Human protein_coding chr2:67626314 chr2:67626314 synonymous SNV . 0 21 hm7G_associated_SNPs_41599 0 0 0 0 1 ETAA1 chr2:67626301 3'AG 67626301 Downstream 14bp 38259 chr5 162898226 162898226 1 + T G UCEC 162898226 + 162898206 162898246 41 AACCAGAAGAATTTGAGAATTCTAAGCTTGGAGTTGATGAA AACCAGAAGAATTTGAGAATGCTAAGCTTGGAGTTGATGAA Direct Gain 0 0.923016889420956 NA NA prediction 0.846033778841913 Functional Gain - HMMR ENSG00000072571 CDS Human protein_coding chr5:162898226 chr5:162898226 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_41600 0 0 1 0 1 HMMR chr5:162898191 3'AG 162898191 Downstream 36bp 38260 chr16 49407945 49407945 1 + C G LUSC 49407945 + 49407925 49407965 41 TAGGCGCATGTCTGACCTCACCTGTGTGCTGGAGTGGCTGG TAGGCGCATGTCTGACCTCAGCTGTGTGCTGGAGTGGCTGG Direct Gain 0 0.923016535399297 NA NA prediction 0.846033070798595 Functional Gain - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49407945 chr16:49407945 nonsynonymous SNV 0.465 4 21 hm7G_associated_SNPs_41601 0 0 0 0 1 C16orf78 chr16:49408000 5'GT 49408000 Upstream 56bp 38261 chr9 130151229 130151229 1 + C G ESCA 130151229 + 130151209 130151249 41 AAGATTCCACTTAGAAACCTCGTGGGCAGAAGCATCGAACG AAGATTCCACTTAGAAACCTGGTGGGCAGAAGCATCGAACG Direct Gain 0 0.923001965942354 NA NA prediction 0.846003931884708 Functional Gain - GARNL3 ENSG00000136895 CDS Human protein_coding chr9:130151229 chr9:130151229 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_41602 0 0 0 0 1 GARNL3 chr9:130151183 3'AG 130151183 Downstream 47bp 38262 chr12 58015624 58015624 1 + T G rs144286675 58015624 + 58015604 58015644 41 GATCCCGGGGGAAGTCGTCTTGGTGAGGATGGCCGTGCGCG GATCCCGGGGGAAGTCGTCTGGGTGAGGATGGCCGTGCGCG Direct Gain 0 0.922985281333932 NA NA prediction 0.845970562667865 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58015624 chr12:58015624 nonsynonymous SNV 0.983 3 21 hm7G_associated_SNPs_41603 0 0 1 3 1 SLC26A10 chr12:58015625 5'GT 58015625 Upstream 2bp 38263 chr22 27026330 27026330 1 + A G UCEC 27026330 + 27026310 27026350 41 TTGCTCCCAGTTTCCGGGCTACCGAGGATTTCAGTATGTGC TTGCTCCCAGTTTCCGGGCTGCCGAGGATTTCAGTATGTGC Direct Gain 0 0.922951808719431 NA NA prediction 0.845903617438862 Functional Gain - CRYBA4 ENSG00000196431 CDS Human protein_coding chr22:27026330 chr22:27026330 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_41604 0 0 0 0 1 CRYBA4 chr22:27026304 3'AG 27026304 Downstream 27bp 38264 chrX 48652265 48652265 1 + A G TGCT 48652265 + 48652245 48652285 41 AACCGCAAGGCATCTGGAAAAGGGAAAAAGAAACGGGGCTC AACCGCAAGGCATCTGGAAAGGGGAAAAAGAAACGGGGCTC Direct Gain 0 0.922950210789105 NA NA prediction 0.845900421578209 Functional Gain - GATA1 ENSG00000102145 CDS Human protein_coding chrX:48652265 chrX:48652265 synonymous SNV . 0 21 hm7G_associated_SNPs_41605 0 0 0 0 1 GATA1 chrX:48652200 3'AG 48652200 Downstream 66bp 38265 chr4 76726384 76726384 1 + A G KIRP 76726384 + 76726364 76726404 41 GGTAGATTGCGAGAAGAGATAGAAGAATTAAAACGTAATCA GGTAGATTGCGAGAAGAGATGGAAGAATTAAAACGTAATCA Direct Gain 0 0.922948380643106 NA NA prediction 0.845896761286211 Functional Gain - USO1 ENSG00000138768 CDS Human protein_coding chr4:76726384 chr4:76726384 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_41606 0 0 1 0 2 USO1 chr4:76726293 3'AG 76726293 Downstream 92bp 38266 chr4 76726384 76726384 1 + A G KIRP 76726384 + 76726364 76726404 41 GGTAGATTGCGAGAAGAGATAGAAGAATTAAAACGTAATCA GGTAGATTGCGAGAAGAGATGGAAGAATTAAAACGTAATCA Direct Gain 0 0.922948380643106 NA NA prediction 0.845896761286211 Functional Gain - USO1 ENSG00000138768 CDS Human protein_coding chr4:76726384 chr4:76726384 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_41606 0 0 1 0 2 USO1 chr4:76726456 5'GT 76726456 Upstream 73bp 38267 chr1 64707368 64707368 1 + A G STAD 64707368 + 64707348 64707388 41 AAATTTCATTGGACAGTATTACAAATGGAAGAAAATGGATC AAATTTCATTGGACAGTATTGCAAATGGAAGAAAATGGATC Direct Gain 0 0.922943852699004 NA NA prediction 0.845887705398009 Functional Gain - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64707368 chr1:64707368 nonsynonymous SNV 0.791 3 21 hm7G_associated_SNPs_41607 0 0 0 0 2 UBE2U chr1:64707335 3'AG 64707335 Downstream 34bp 38268 chr1 64707368 64707368 1 + A G STAD 64707368 + 64707348 64707388 41 AAATTTCATTGGACAGTATTACAAATGGAAGAAAATGGATC AAATTTCATTGGACAGTATTGCAAATGGAAGAAAATGGATC Direct Gain 0 0.922943852699004 NA NA prediction 0.845887705398009 Functional Gain - UBE2U ENSG00000177414 CDS Human protein_coding chr1:64707368 chr1:64707368 nonsynonymous SNV 0.791 3 21 hm7G_associated_SNPs_41607 0 0 0 0 2 UBE2U chr1:64707416 5'GT 64707416 Upstream 49bp 38269 chr1 25812218 25812218 1 + A G UCEC 25812218 + 25812198 25812238 41 GTAGAGAAACAGTTAATGGAAGAGAAAAAGAGGAAGAAGTT GTAGAGAAACAGTTAATGGAGGAGAAAAAGAGGAAGAAGTT Direct Gain 0 0.922941303714219 NA NA prediction 0.845882607428437 Functional Gain - TMEM57 ENSG00000204178 CDS Human protein_coding chr1:25812218 chr1:25812218 synonymous SNV . 0 21 hm7G_associated_SNPs_41609 0 0 1 0 1 TMEM57 chr1:25812286 5'GT 25812286 Upstream 69bp 38270 chr1 46976674 46976674 1 + A G LIHC 46976674 + 46976654 46976694 41 CCTGCAGAAGGAACAGCTCCAGAAGCAGAAGGAGGCTGAGG CCTGCAGAAGGAACAGCTCCGGAAGCAGAAGGAGGCTGAGG Direct Gain 0 0.922936251147244 NA NA prediction 0.845872502294489 Functional Gain - DMBX1 ENSG00000197587 CDS Human protein_coding chr1:46976674 chr1:46976674 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41610 0 0 0 0 1 DMBX1 chr1:46976607 3'AG 46976607 Downstream 68bp 38271 chr1 38488461 38488461 1 + C G OV 38488461 + 38488441 38488481 41 TCGTTATTGCTCAGAAAATTCAAACACGCAAAGATCTTATG TCGTTATTGCTCAGAAAATTGAAACACGCAAAGATCTTATG Direct Gain 0 0.922928933655249 NA NA prediction 0.845857867310498 Functional Gain - UTP11 ENSG00000183520 CDS Human protein_coding chr1:38488461 chr1:38488461 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41611 0 0 1 2 2 UTP11 chr1:38488371 3'AG 38488371 Downstream 91bp 38272 chr1 38488461 38488461 1 + C G OV 38488461 + 38488441 38488481 41 TCGTTATTGCTCAGAAAATTCAAACACGCAAAGATCTTATG TCGTTATTGCTCAGAAAATTGAAACACGCAAAGATCTTATG Direct Gain 0 0.922928933655249 NA NA prediction 0.845857867310498 Functional Gain - UTP11 ENSG00000183520 CDS Human protein_coding chr1:38488461 chr1:38488461 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41611 0 0 1 2 2 UTP11 chr1:38488481 5'GT 38488481 Upstream 21bp 38273 chr16 20430576 20430576 1 + C G BLCA 20430576 + 20430556 20430596 41 TGATGATTCCGGGTGTGACTCAGCTGACAGAGAAGGACCTC TGATGATTCCGGGTGTGACTGAGCTGACAGAGAAGGACCTC Direct Gain 0 0.922912082730287 NA NA prediction 0.845824165460574 Functional Gain - ACSM5 ENSG00000183549 CDS Human protein_coding chr16:20430576 chr16:20430576 nonsynonymous SNV 0.558 4 21 hm7G_associated_SNPs_41612 0 0 1 0 1 ACSM5 chr16:20430550 3'AG 20430550 Downstream 27bp 38274 chr1 153963266 153963266 1 + C G rs181547215 153963266 + 153963246 153963286 41 GCGGTGACGACCTACGCACACGAGAACATGCCTGTGAGTGC GCGGTGACGACCTACGCACAGGAGAACATGCCTGTGAGTGC Direct Gain 0 0.922911831087934 NA NA prediction 0.845823662175868 Functional Gain - RPS27 ENSG00000177954 UTR5 Human protein_coding chr1:153963266 chr1:153963266 . . 0 21 hm7G_associated_SNPs_41613 0 0 1 0 1 RPS27 chr1:153963278 5'GT 153963278 Upstream 13bp 38275 chr4 37848864 37848864 1 + A G LUAD 37848864 + 37848844 37848884 41 TGGATGGGAAACAGAGCCAAACAGCTAATAGACCAGGGGAA TGGATGGGAAACAGAGCCAAGCAGCTAATAGACCAGGGGAA Direct Gain 0 0.922896886125751 NA NA prediction 0.845793772251501 Functional Gain - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37848864 chr4:37848864 synonymous SNV . 0 21 hm7G_associated_SNPs_41614 0 0 1 0 2 PGM2 chr4:37848823 3'AG 37848823 Downstream 42bp 38276 chr4 37848864 37848864 1 + A G LUAD 37848864 + 37848844 37848884 41 TGGATGGGAAACAGAGCCAAACAGCTAATAGACCAGGGGAA TGGATGGGAAACAGAGCCAAGCAGCTAATAGACCAGGGGAA Direct Gain 0 0.922896886125751 NA NA prediction 0.845793772251501 Functional Gain - PGM2 ENSG00000169299 CDS Human protein_coding chr4:37848864 chr4:37848864 synonymous SNV . 0 21 hm7G_associated_SNPs_41614 0 0 1 0 2 PGM2 chr4:37848916 5'GT 37848916 Upstream 53bp 38277 chr16 46724917 46724917 1 + A G COAD 46724917 + 46724897 46724937 41 AACCAGGAAAGCAGAGGAGTACTTGCGCCTGTCCCGGGTGA AACCAGGAAAGCAGAGGAGTGCTTGCGCCTGTCCCGGGTGA Direct Gain 0 0.922885117032088 NA NA prediction 0.845770234064176 Functional Gain - ORC6 ENSG00000091651 CDS Human protein_coding chr16:46724917 chr16:46724917 nonsynonymous SNV 0.979 3 21 hm7G_associated_SNPs_41615 0 0 1 0 1 ORC6 chr16:46724903 3'AG 46724903 Downstream 15bp 38278 chr3 138117370 138117370 1 + T G OV 138117370 + 138117350 138117390 41 TTTGATGCACTTGAGGAAGATCACCAGGGAGCAAGGAAAAG TTTGATGCACTTGAGGAAGAGCACCAGGGAGCAAGGAAAAG Direct Gain 0 0.922872350915155 NA NA prediction 0.845744701830309 Functional Gain - MRAS ENSG00000158186 CDS Human protein_coding chr3:138117370 chr3:138117370 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_41617 0 0 0 0 2 MRAS chr3:138117311 3'AG 138117311 Downstream 60bp 38279 chr3 138117370 138117370 1 + T G OV 138117370 + 138117350 138117390 41 TTTGATGCACTTGAGGAAGATCACCAGGGAGCAAGGAAAAG TTTGATGCACTTGAGGAAGAGCACCAGGGAGCAAGGAAAAG Direct Gain 0 0.922872350915155 NA NA prediction 0.845744701830309 Functional Gain - MRAS ENSG00000158186 CDS Human protein_coding chr3:138117370 chr3:138117370 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_41617 0 0 0 0 2 MRAS chr3:138117410 5'GT 138117410 Upstream 41bp 38280 chr10 90562768 90562768 1 + A G UCEC 90562768 + 90562748 90562788 41 ATTCAGTACATATGCCAACTAAAGCTGTGGACCCAGAAGCA ATTCAGTACATATGCCAACTGAAGCTGTGGACCCAGAAGCA Direct Gain 0 0.922866174430304 NA NA prediction 0.845732348860609 Functional Gain - LIPM ENSG00000173239 CDS Human protein_coding chr10:90562768 chr10:90562768 nonsynonymous SNV 0.971 0 21 hm7G_associated_SNPs_41618 0 0 0 0 1 LIPM chr10:90562800 5'GT 90562800 Upstream 33bp 38281 chr9 35735117 35735117 1 + A G UCEC 35735117 + 35735097 35735137 41 TCCTTTCAGACAGAGGAACAAATTCTGAAACGTGTGCGGAG TCCTTTCAGACAGAGGAACAGATTCTGAAACGTGTGCGGAG Direct Gain 0 0.922856334517243 NA NA prediction 0.845712669034485 Functional Gain - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35735117 chr9:35735117 synonymous SNV . 0 21 hm7G_associated_SNPs_41620 0 0 0 0 2 CREB3 chr9:35735106 3'AG 35735106 Downstream 12bp 38282 chr9 35735117 35735117 1 + A G UCEC 35735117 + 35735097 35735137 41 TCCTTTCAGACAGAGGAACAAATTCTGAAACGTGTGCGGAG TCCTTTCAGACAGAGGAACAGATTCTGAAACGTGTGCGGAG Direct Gain 0 0.922856334517243 NA NA prediction 0.845712669034485 Functional Gain - CREB3 ENSG00000107175 CDS Human protein_coding chr9:35735117 chr9:35735117 synonymous SNV . 0 21 hm7G_associated_SNPs_41620 0 0 0 0 2 CREB3 chr9:35735212 5'GT 35735212 Upstream 96bp 38283 chr4 57356588 57356588 1 + A G rs17086879 57356588 + 57356568 57356608 41 AAGGAGGCAATTAGTGACCTACAACAGCTGTGGAAGTAAGC AAGGAGGCAATTAGTGACCTGCAACAGCTGTGGAAGTAAGC Direct Gain 0 0.922850017409169 NA NA prediction 0.845700034818337 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57356588 chr4:57356588 synonymous SNV . 0 21 hm7G_associated_SNPs_41621 1 0 1 0 2 SRP72 chr4:57356499 3'AG 57356499 Downstream 90bp 38284 chr4 57356588 57356588 1 + A G rs17086879 57356588 + 57356568 57356608 41 AAGGAGGCAATTAGTGACCTACAACAGCTGTGGAAGTAAGC AAGGAGGCAATTAGTGACCTGCAACAGCTGTGGAAGTAAGC Direct Gain 0 0.922850017409169 NA NA prediction 0.845700034818337 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57356588 chr4:57356588 synonymous SNV . 0 21 hm7G_associated_SNPs_41621 1 0 1 0 2 SRP72 chr4:57356602 5'GT 57356602 Upstream 15bp 38285 chr1 23406112 23406112 1 + A G UCEC 23406112 + 23406092 23406132 41 TGTTCGGGCATGTTGGCAGTACGACTGCCAGCAGGGGTGAG TGTTCGGGCATGTTGGCAGTGCGACTGCCAGCAGGGGTGAG Direct Gain 0 0.922848695148293 NA NA prediction 0.845697390296587 Functional Gain - KDM1A ENSG00000004487 CDS Human protein_coding chr1:23406112 chr1:23406112 nonsynonymous SNV 0.989 2 21 hm7G_associated_SNPs_41622 0 0 1 0 2 KDM1A chr1:23406046 3'AG 23406046 Downstream 67bp 38286 chr1 23406112 23406112 1 + A G UCEC 23406112 + 23406092 23406132 41 TGTTCGGGCATGTTGGCAGTACGACTGCCAGCAGGGGTGAG TGTTCGGGCATGTTGGCAGTGCGACTGCCAGCAGGGGTGAG Direct Gain 0 0.922848695148293 NA NA prediction 0.845697390296587 Functional Gain - KDM1A ENSG00000004487 CDS Human protein_coding chr1:23406112 chr1:23406112 nonsynonymous SNV 0.989 2 21 hm7G_associated_SNPs_41622 0 0 1 0 2 KDM1A chr1:23406160 5'GT 23406160 Upstream 49bp 38287 chr20 56140121 56140121 1 + C G LUAD 56140121 + 56140101 56140141 41 CCTCTAGTCTATGAAGCTCTCAGCTGGCAACATGGAGTCTT CCTCTAGTCTATGAAGCTCTGAGCTGGCAACATGGAGTCTT Direct Gain 0 0.922841172024054 NA NA prediction 0.845682344048109 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56140121 chr20:56140121 synonymous SNV . 0 21 hm7G_associated_SNPs_41623 0 0 1 0 2 PCK1 chr20:56140096 3'AG 56140096 Downstream 26bp 38288 chr20 56140121 56140121 1 + C G LUAD 56140121 + 56140101 56140141 41 CCTCTAGTCTATGAAGCTCTCAGCTGGCAACATGGAGTCTT CCTCTAGTCTATGAAGCTCTGAGCTGGCAACATGGAGTCTT Direct Gain 0 0.922841172024054 NA NA prediction 0.845682344048109 Functional Gain - PCK1 ENSG00000124253 CDS Human protein_coding chr20:56140121 chr20:56140121 synonymous SNV . 0 21 hm7G_associated_SNPs_41623 0 0 1 0 2 PCK1 chr20:56140191 5'GT 56140191 Upstream 71bp 38289 chr2 162251644 162251644 1 + A G LIHC 162251644 + 162251624 162251664 41 AGGTTTGACACTTCAGGACTACAGTGAACATTGTAAACACA AGGTTTGACACTTCAGGACTGCAGTGAACATTGTAAACACA Direct Gain 0 0.922835500770174 NA NA prediction 0.845671001540348 Functional Gain - PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162251644 chr2:162251644 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41624 0 0 1 0 2 PSMD14 chr2:162251589 3'AG 162251589 Downstream 56bp 38290 chr2 162251644 162251644 1 + A G LIHC 162251644 + 162251624 162251664 41 AGGTTTGACACTTCAGGACTACAGTGAACATTGTAAACACA AGGTTTGACACTTCAGGACTGCAGTGAACATTGTAAACACA Direct Gain 0 0.922835500770174 NA NA prediction 0.845671001540348 Functional Gain - PSMD14 ENSG00000115233 CDS Human protein_coding chr2:162251644 chr2:162251644 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41624 0 0 1 0 2 PSMD14 chr2:162251714 5'GT 162251714 Upstream 71bp 38291 chr19 49469158 49469158 1 + C G LUSC 49469158 + 49469138 49469178 41 CAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGGTAAC CAGCGTGGCGGCCGCGCTCTGTTCCAGGACATCAAGGTAAC Direct Gain 0 0.92283481951457 NA NA prediction 0.84566963902914 Functional Gain - FTL ENSG00000087086 CDS Human protein_coding chr19:49469158 chr19:49469158 synonymous SNV . 0 21 hm7G_associated_SNPs_41625 0 0 1 0 1 FTL chr19:49469173 5'GT 49469173 Upstream 16bp 38292 chrX 19377094 19377094 1 + C G BLCA 19377094 + 19377074 19377114 41 AGTGACCCTATTATGCTTCTCAAGGACAGGATGGTGAACAG AGTGACCCTATTATGCTTCTGAAGGACAGGATGGTGAACAG Direct Gain 0 0.922762834124907 NA NA prediction 0.845525668249814 Functional Gain - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19377094 chrX:19377094 synonymous SNV . 0 21 hm7G_associated_SNPs_41629 0 0 1 0 2 PDHA1 chrX:19377034 3'AG 19377034 Downstream 61bp 38293 chrX 19377094 19377094 1 + C G BLCA 19377094 + 19377074 19377114 41 AGTGACCCTATTATGCTTCTCAAGGACAGGATGGTGAACAG AGTGACCCTATTATGCTTCTGAAGGACAGGATGGTGAACAG Direct Gain 0 0.922762834124907 NA NA prediction 0.845525668249814 Functional Gain - PDHA1 ENSG00000131828 CDS Human protein_coding chrX:19377094 chrX:19377094 synonymous SNV . 0 21 hm7G_associated_SNPs_41629 0 0 1 0 2 PDHA1 chrX:19377142 5'GT 19377142 Upstream 49bp 38294 chr15 49775360 49775360 1 + T G UCS 49775360 + 49775340 49775380 41 CCTTGCAGATATCATGGAAATCAGGACAGTGGCAGTTGGAA CCTTGCAGATATCATGGAAAGCAGGACAGTGGCAGTTGGAA Direct Gain 0 0.922760603063006 NA NA prediction 0.845521206126012 Functional Gain - FGF7 ENSG00000140285 CDS Human protein_coding chr15:49775360 chr15:49775360 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_41630 0 0 0 0 2 FGF7 chr15:49775348 3'AG 49775348 Downstream 13bp 38295 chr15 49775360 49775360 1 + T G UCS 49775360 + 49775340 49775380 41 CCTTGCAGATATCATGGAAATCAGGACAGTGGCAGTTGGAA CCTTGCAGATATCATGGAAAGCAGGACAGTGGCAGTTGGAA Direct Gain 0 0.922760603063006 NA NA prediction 0.845521206126012 Functional Gain - FGF7 ENSG00000140285 CDS Human protein_coding chr15:49775360 chr15:49775360 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_41630 0 0 0 0 2 FGF7 chr15:49775451 5'GT 49775451 Upstream 92bp 38296 chr15 76630302 76630302 1 + A G PAAD 76630302 + 76630282 76630322 41 GACCTACTGCAAGCGGGACTATGTCAGGTGAGGCCGGCGGG GACCTACTGCAAGCGGGACTGTGTCAGGTGAGGCCGGCGGG Direct Gain 0 0.922751488735684 NA NA prediction 0.845502977471368 Functional Gain - ISL2 ENSG00000159556 CDS Human protein_coding chr15:76630302 chr15:76630302 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_41632 0 0 1 0 1 ISL2 chr15:76630308 5'GT 76630308 Upstream 7bp 38297 chr11 70052282 70052282 1 + A G BLCA 70052282 + 70052262 70052302 41 ATATGTGATAATGTGGGGAAAGATTGGAGAAGGCTGGCTCG ATATGTGATAATGTGGGGAAGGATTGGAGAAGGCTGGCTCG Direct Gain 0 0.922687069214467 NA NA prediction 0.845374138428933 Functional Gain - FADD ENSG00000168040 CDS Human protein_coding chr11:70052282 chr11:70052282 synonymous SNV . 0 21 hm7G_associated_SNPs_41635 0 0 1 0 1 FADD chr11:70052239 3'AG 70052239 Downstream 44bp 38298 chr15 64692982 64692982 1 + C G ESCA 64692982 + 64692962 64693002 41 AGATATTTTACAGCGTGACTCAAACAAGAGCCAGAAACTGC AGATATTTTACAGCGTGACTGAAACAAGAGCCAGAAACTGC Direct Gain 0 0.922682940192111 NA NA prediction 0.845365880384221 Functional Gain - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64692982 chr15:64692982 stopgain 1.000 1 21 hm7G_associated_SNPs_41637 0 0 0 0 2 TRIP4 chr15:64692942 3'AG 64692942 Downstream 41bp 38299 chr15 64692982 64692982 1 + C G ESCA 64692982 + 64692962 64693002 41 AGATATTTTACAGCGTGACTCAAACAAGAGCCAGAAACTGC AGATATTTTACAGCGTGACTGAAACAAGAGCCAGAAACTGC Direct Gain 0 0.922682940192111 NA NA prediction 0.845365880384221 Functional Gain - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64692982 chr15:64692982 stopgain 1.000 1 21 hm7G_associated_SNPs_41637 0 0 0 0 2 TRIP4 chr15:64693020 5'GT 64693020 Upstream 39bp 38300 chr1 113212635 113212635 1 + C G BLCA 113212635 + 113212615 113212655 41 CAGCAATTAGTGAAAACTATCAAACAATGTCAGATACCACA CAGCAATTAGTGAAAACTATGAAACAATGTCAGATACCACA Direct Gain 0 0.922676721917718 NA NA prediction 0.845353443835437 Functional Gain - CAPZA1 ENSG00000116489 CDS Human protein_coding chr1:113212635 chr1:113212635 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41638 0 0 1 0 1 CAPZA1 chr1:113212614 3'AG 113212614 Downstream 22bp 38301 chr5 42700035 42700035 1 + T G LUSC 42700035 + 42700015 42700055 41 GCACCACGCAATGCAGATATTCAGAAAGGATGGATGGTTCT GCACCACGCAATGCAGATATGCAGAAAGGATGGATGGTTCT Direct Gain 0 0.922665436723398 NA NA prediction 0.845330873446796 Functional Gain - GHR ENSG00000112964 CDS Human protein_coding chr5:42700035 chr5:42700035 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41640 0 0 0 0 1 GHR chr5:42700104 5'GT 42700104 Upstream 70bp 38302 chrX 49104139 49104139 1 + C G HNSC 49104139 + 49104119 49104159 41 GCAGCTCAGGAACAGGAGCTCGAGTCCCTTCGGGAGCAGCT GCAGCTCAGGAACAGGAGCTGGAGTCCCTTCGGGAGCAGCT Direct Gain 0 0.922654657319558 NA NA prediction 0.845309314639117 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49104139 chrX:49104139 synonymous SNV . 0 21 hm7G_associated_SNPs_41641 0 0 1 0 2 CCDC22 chrX:49104110 3'AG 49104110 Downstream 30bp 38303 chrX 49104139 49104139 1 + C G HNSC 49104139 + 49104119 49104159 41 GCAGCTCAGGAACAGGAGCTCGAGTCCCTTCGGGAGCAGCT GCAGCTCAGGAACAGGAGCTGGAGTCCCTTCGGGAGCAGCT Direct Gain 0 0.922654657319558 NA NA prediction 0.845309314639117 Functional Gain - CCDC22 ENSG00000101997 CDS Human protein_coding chrX:49104139 chrX:49104139 synonymous SNV . 0 21 hm7G_associated_SNPs_41641 0 0 1 0 2 CCDC22 chrX:49104229 5'GT 49104229 Upstream 91bp 38304 chr8 87162381 87162381 1 + C G OV 87162381 + 87162361 87162401 41 TTTTATCATCACTCTTAACTCCTTTGGCACTGAATTGAGCA TTTTATCATCACTCTTAACTGCTTTGGCACTGAATTGAGCA Direct Gain 0 0.922643571673237 NA NA prediction 0.845287143346473 Functional Gain - ATP6V0D2 ENSG00000147614 CDS Human protein_coding chr8:87162381 chr8:87162381 nonsynonymous SNV 0.993 4 21 hm7G_associated_SNPs_41642 0 0 0 0 1 ATP6V0D2 chr8:87162341 3'AG 87162341 Downstream 41bp 38305 chr5 55088578 55088578 1 + C G STAD 55088578 + 55088558 55088598 41 TTCTTGCCCAGGAATGCCATCAAAGGAACAGCGCCAAACCC TTCTTGCCCAGGAATGCCATGAAAGGAACAGCGCCAAACCC Direct Gain 0 0.922624628880736 NA NA prediction 0.845249257761472 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55088578 chr5:55088578 stopgain 1.000 1 21 hm7G_associated_SNPs_41643 0 0 0 0 1 DDX4 chr5:55088635 5'GT 55088635 Upstream 58bp 38306 chr17 9760880 9760880 1 + C G SARC 9760880 + 9760860 9760900 41 CAATGAGAATGGGTGGATGTCCTACCTGTCAGAGGTAATCC CAATGAGAATGGGTGGATGTGCTACCTGTCAGAGGTAATCC Direct Gain 0 0.922622829565487 NA NA prediction 0.845245659130974 Functional Gain - GLP2R ENSG00000065325 CDS Human protein_coding chr17:9760880 chr17:9760880 nonsynonymous SNV 0.967 3 21 hm7G_associated_SNPs_41644 0 0 0 0 1 GLP2R chr17:9760893 5'GT 9760893 Upstream 14bp 38307 chr12 52451140 52451140 1 + A G LUSC 52451140 + 52451120 52451160 41 CCCATCTGCCTGCCAGGTCTAAGCCAGGCGAGGGCAAGCTC CCCATCTGCCTGCCAGGTCTGAGCCAGGCGAGGGCAAGCTC Direct Gain 0 0.922617158916606 NA NA prediction 0.845234317833212 Functional Gain - NR4A1 ENSG00000123358 CDS Human protein_coding chr12:52451140 chr12:52451140 nonsynonymous SNV 0.373 2 21 hm7G_associated_SNPs_41646 0 0 1 0 1 NR4A1 chr12:52451136 3'AG 52451136 Downstream 5bp 38308 chr11 837606 837606 1 + C G LGG 837606 + 837586 837626 41 CGAGACCATGCCTCCAACATCTACAAGGTGGAGGTGGGTGT CGAGACCATGCCTCCAACATGTACAAGGTGGAGGTGGGTGT Direct Gain 0 0.922601667699483 NA NA prediction 0.845203335398965 Functional Gain - CD151 ENSG00000177697;ENSG00000177700 exonic;splicing Human protein_coding chr11:837606 chr11:837606 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41648 0 0 1 0 1 CD151 chr11:837618 5'GT 837618 Upstream 13bp 38309 chr9 2650372 2650372 1 + A G STAD 2650372 + 2650352 2650392 41 ATTTTTTTTCCTGACTAGGTAAAAATTGGTGTGAAGAAGAC ATTTTTTTTCCTGACTAGGTGAAAATTGGTGTGAAGAAGAC Direct Gain 0 0.922591489773266 NA NA prediction 0.845182979546531 Functional Gain - VLDLR ENSG00000147852 CDS Human protein_coding chr9:2650372 chr9:2650372 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_41650 0 0 0 0 1 VLDLR chr9:2650370 3'AG 2650370 Downstream 3bp 38310 chr1 78395041 78395041 1 + T G UCEC 78395041 + 78395021 78395061 41 CCAAGACACAGCAAAAATTTTTAAAGGGTACCGCCCTGGTA CCAAGACACAGCAAAAATTTGTAAAGGGTACCGCCCTGGTA Direct Gain 0 0.922587066798441 NA NA prediction 0.845174133596883 Functional Gain - NEXN ENSG00000162614 CDS Human protein_coding chr1:78395041 chr1:78395041 nonsynonymous SNV 0.064 0 21 hm7G_associated_SNPs_41651 0 0 1 0 1 NEXN chr1:78395001 3'AG 78395001 Downstream 41bp 38311 chr1 31811835 31811835 1 + C G CESC 31811835 + 31811815 31811855 41 TAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCAAG TAGAATAAAAGTATCCCTCTGCATGAAGGTTGTCAATCAAG Direct Gain 0 0.922524840206173 NA NA prediction 0.845049680412346 Functional Gain - ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811835 chr1:31811835 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41656 0 0 1 0 2 ZCCHC17 chr1:31811804 3'AG 31811804 Downstream 32bp 38312 chr1 31811835 31811835 1 + C G CESC 31811835 + 31811815 31811855 41 TAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCAAG TAGAATAAAAGTATCCCTCTGCATGAAGGTTGTCAATCAAG Direct Gain 0 0.922524840206173 NA NA prediction 0.845049680412346 Functional Gain - ZCCHC17 ENSG00000121766 CDS Human protein_coding chr1:31811835 chr1:31811835 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41656 0 0 1 0 2 ZCCHC17 chr1:31811895 5'GT 31811895 Upstream 61bp 38313 chr16 55362664 55362664 1 + C G LIHC 55362664 + 55362644 55362684 41 CGGCTGAGTGACCTGGAAGACCTGGAGGAAGAGGAGGAGGA CGGCTGAGTGACCTGGAAGAGCTGGAGGAAGAGGAGGAGGA Direct Gain 0 0.922510347727583 NA NA prediction 0.845020695455166 Functional Gain - IRX6 ENSG00000159387 CDS Human protein_coding chr16:55362664 chr16:55362664 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41657 0 0 0 0 1 IRX6 chr16:55362612 3'AG 55362612 Downstream 53bp 38314 chr4 156725753 156725753 1 + A G KIRP 156725753 + 156725733 156725773 41 TCTTTTTTGCAGATAACAATAGGGATACACACTGGAGAGGT TCTTTTTTGCAGATAACAATGGGGATACACACTGGAGAGGT Direct Gain 0 0.922498387142847 NA NA prediction 0.844996774285695 Functional Gain - GUCY1B3 ENSG00000061918 CDS Human protein_coding chr4:156725753 chr4:156725753 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_41658 0 0 0 0 1 GUCY1B3 chr4:156725745 3'AG 156725745 Downstream 9bp 38315 chr2 32361975 32361975 1 + A G LUSC 32361975 + 32361955 32361995 41 ATAGCCTTTTGTGTGAAAGAAGAGAAGGGGAGCACGATGCT ATAGCCTTTTGTGTGAAAGAGGAGAAGGGGAGCACGATGCT Direct Gain 0 0.922495836339821 NA NA prediction 0.844991672679642 Functional Gain - SPAST ENSG00000021574 CDS Human protein_coding chr2:32361975 chr2:32361975 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41659 0 0 0 0 2 SPAST chr2:32361946 3'AG 32361946 Downstream 30bp 38316 chr2 32361975 32361975 1 + A G LUSC 32361975 + 32361955 32361995 41 ATAGCCTTTTGTGTGAAAGAAGAGAAGGGGAGCACGATGCT ATAGCCTTTTGTGTGAAAGAGGAGAAGGGGAGCACGATGCT Direct Gain 0 0.922495836339821 NA NA prediction 0.844991672679642 Functional Gain - SPAST ENSG00000021574 CDS Human protein_coding chr2:32361975 chr2:32361975 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41659 0 0 0 0 2 SPAST chr2:32362037 5'GT 32362037 Upstream 63bp 38317 chr3 129007814 129007814 1 + A G UCEC 129007814 + 129007794 129007834 41 CTACCAACTGTCGTAGTGATACCGTAATGGAGAAACGGTCA CTACCAACTGTCGTAGTGATGCCGTAATGGAGAAACGGTCA Direct Gain 0 0.922481724366784 NA NA prediction 0.844963448733568 Functional Gain - HMCES ENSG00000183624 CDS Human protein_coding chr3:129007814 chr3:129007814 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41660 0 0 0 0 1 HMCES chr3:129007840 5'GT 129007840 Upstream 27bp 38318 chr16 85946766 85946766 1 + C G HNSC 85946766 + 85946746 85946786 41 GACGATTACATGGGGATGATCAAAAGGAGCCCTTCCCCGCC GACGATTACATGGGGATGATGAAAAGGAGCCCTTCCCCGCC Direct Gain 0 0.922459135161608 NA NA prediction 0.844918270323217 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85946766 chr16:85946766 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41663 0 0 1 0 2 IRF8 chr16:85946737 3'AG 85946737 Downstream 30bp 38319 chr16 85946766 85946766 1 + C G HNSC 85946766 + 85946746 85946786 41 GACGATTACATGGGGATGATCAAAAGGAGCCCTTCCCCGCC GACGATTACATGGGGATGATGAAAAGGAGCCCTTCCCCGCC Direct Gain 0 0.922459135161608 NA NA prediction 0.844918270323217 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85946766 chr16:85946766 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41663 0 0 1 0 2 IRF8 chr16:85946842 5'GT 85946842 Upstream 77bp 38320 chr7 8095089 8095089 1 + A G LUSC 8095089 + 8095069 8095109 41 GCCAAACTGAGGCAGCAACTACAACGCAGTAAACAGAGTAG GCCAAACTGAGGCAGCAACTGCAACGCAGTAAACAGAGTAG Direct Gain 0 0.922448156269247 NA NA prediction 0.844896312538495 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8095089 chr7:8095089 synonymous SNV . 0 21 hm7G_associated_SNPs_41665 0 0 1 0 2 GLCCI1 chr7:8095063 3'AG 8095063 Downstream 27bp 38321 chr7 8095089 8095089 1 + A G LUSC 8095089 + 8095069 8095109 41 GCCAAACTGAGGCAGCAACTACAACGCAGTAAACAGAGTAG GCCAAACTGAGGCAGCAACTGCAACGCAGTAAACAGAGTAG Direct Gain 0 0.922448156269247 NA NA prediction 0.844896312538495 Functional Gain - GLCCI1 ENSG00000106415 CDS Human protein_coding chr7:8095089 chr7:8095089 synonymous SNV . 0 21 hm7G_associated_SNPs_41665 0 0 1 0 2 GLCCI1 chr7:8095179 5'GT 8095179 Upstream 91bp 38322 chr9 133370345 133370345 1 + C G BLCA 133370345 + 133370325 133370365 41 AAAGTGCAGGTGTCCGTCCTCAAGGGCCAGGTGTACATCCT AAAGTGCAGGTGTCCGTCCTGAAGGGCCAGGTGTACATCCT Direct Gain 0 0.922440083104805 NA NA prediction 0.844880166209611 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133370345 chr9:133370345 synonymous SNV . 0 21 hm7G_associated_SNPs_41666 0 0 1 0 2 ASS1 chr9:133370254 3'AG 133370254 Downstream 92bp 38323 chr9 133370345 133370345 1 + C G BLCA 133370345 + 133370325 133370365 41 AAAGTGCAGGTGTCCGTCCTCAAGGGCCAGGTGTACATCCT AAAGTGCAGGTGTCCGTCCTGAAGGGCCAGGTGTACATCCT Direct Gain 0 0.922440083104805 NA NA prediction 0.844880166209611 Functional Gain - ASS1 ENSG00000130707 CDS Human protein_coding chr9:133370345 chr9:133370345 synonymous SNV . 0 21 hm7G_associated_SNPs_41666 0 0 1 0 2 ASS1 chr9:133370410 5'GT 133370410 Upstream 66bp 38324 chr7 128119554 128119554 1 + A G UCEC 128119554 + 128119534 128119574 41 TCCTGGATCCTCAGCCACCTACCGAATACTGGAGGTAACCT TCCTGGATCCTCAGCCACCTGCCGAATACTGGAGGTAACCT Direct Gain 0 0.922439686044356 NA NA prediction 0.844879372088712 Functional Gain - METTL2B ENSG00000165055 CDS Human protein_coding chr7:128119554 chr7:128119554 nonsynonymous SNV 0.985 1 21 hm7G_associated_SNPs_41667 0 0 0 0 1 METTL2B chr7:128119567 5'GT 128119567 Upstream 14bp 38325 chr5 147484546 147484546 1 + A G LGG 147484546 + 147484526 147484566 41 AAAGAGCAAGAGCAAAGGCTAAAAGAGAAGCTGCAAAGGTA AAAGAGCAAGAGCAAAGGCTGAAAGAGAAGCTGCAAAGGTA Direct Gain 0 0.922423900233241 NA NA prediction 0.844847800466482 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147484546 chr5:147484546 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41670 0 0 0 0 2 SPINK5 chr5:147484515 3'AG 147484515 Downstream 32bp 38326 chr5 147484546 147484546 1 + A G LGG 147484546 + 147484526 147484566 41 AAAGAGCAAGAGCAAAGGCTAAAAGAGAAGCTGCAAAGGTA AAAGAGCAAGAGCAAAGGCTGAAAGAGAAGCTGCAAAGGTA Direct Gain 0 0.922423900233241 NA NA prediction 0.844847800466482 Functional Gain - SPINK5 ENSG00000133710 CDS Human protein_coding chr5:147484546 chr5:147484546 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41670 0 0 0 0 2 SPINK5 chr5:147484563 5'GT 147484563 Upstream 18bp 38327 chr12 123467043 123467043 1 + A G COAD 123467043 + 123467023 123467063 41 AAGGGAGATGGCGAGGTCCTAGAGGAAATCGTAACCAAAGA AAGGGAGATGGCGAGGTCCTGGAGGAAATCGTAACCAAAGA Direct Gain 0 0.922405899098844 NA NA prediction 0.844811798197688 Functional Gain - ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123467043 chr12:123467043 synonymous SNV . 0 21 hm7G_associated_SNPs_41672 0 0 1 1 2 ARL6IP4 chr12:123467016 3'AG 123467016 Downstream 28bp 38328 chr12 123467043 123467043 1 + A G COAD 123467043 + 123467023 123467063 41 AAGGGAGATGGCGAGGTCCTAGAGGAAATCGTAACCAAAGA AAGGGAGATGGCGAGGTCCTGGAGGAAATCGTAACCAAAGA Direct Gain 0 0.922405899098844 NA NA prediction 0.844811798197688 Functional Gain - ARL6IP4 ENSG00000182196 CDS Human protein_coding chr12:123467043 chr12:123467043 synonymous SNV . 0 21 hm7G_associated_SNPs_41672 0 0 1 1 2 ARL6IP4 chr12:123467085 5'GT 123467085 Upstream 43bp 38329 chr14 24642246 24642246 1 + C G BLCA 24642246 + 24642226 24642266 41 TCTCAACAATGCCAGTACCTCGTGGGTAAGGCTGGGAACCC TCTCAACAATGCCAGTACCTGGTGGGTAAGGCTGGGAACCC Direct Gain 0 0.92237726848104 NA NA prediction 0.84475453696208 Functional Gain - REC8 ENSG00000100918 CDS Human protein_coding chr14:24642246 chr14:24642246 synonymous SNV . 0 21 hm7G_associated_SNPs_41675 0 0 1 0 1 REC8 chr14:24642250 5'GT 24642250 Upstream 5bp 38330 chr5 141511789 141511789 1 + A G UCEC 141511789 + 141511769 141511809 41 TTCTGCAGCATATTTTGACTACAAGGATGAGTCTGGGTTTC TTCTGCAGCATATTTTGACTGCAAGGATGAGTCTGGGTTTC Direct Gain 0 0.922369245717117 NA NA prediction 0.844738491434234 Functional Gain - NDFIP1 ENSG00000131507 CDS Human protein_coding chr5:141511789 chr5:141511789 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41676 0 0 1 0 2 NDFIP1 chr5:141511777 3'AG 141511777 Downstream 13bp 38331 chr5 141511789 141511789 1 + A G UCEC 141511789 + 141511769 141511809 41 TTCTGCAGCATATTTTGACTACAAGGATGAGTCTGGGTTTC TTCTGCAGCATATTTTGACTGCAAGGATGAGTCTGGGTTTC Direct Gain 0 0.922369245717117 NA NA prediction 0.844738491434234 Functional Gain - NDFIP1 ENSG00000131507 CDS Human protein_coding chr5:141511789 chr5:141511789 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41676 0 0 1 0 2 NDFIP1 chr5:141511848 5'GT 141511848 Upstream 60bp 38332 chr18 8624994 8624994 1 + C G HNSC 8624994 + 8624974 8625014 41 AAGAAAATTAGATTACAGATCTGGTAAGTGGGAGAGTGTGC AAGAAAATTAGATTACAGATGTGGTAAGTGGGAGAGTGTGC Direct Gain 0 0.922368209114911 NA NA prediction 0.844736418229821 Functional Gain - RAB12 ENSG00000206418 CDS Human protein_coding chr18:8624994 chr18:8624994 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_41677 0 0 1 0 2 RAB12 chr18:8624936 3'AG 8624936 Downstream 59bp 38333 chr18 8624994 8624994 1 + C G HNSC 8624994 + 8624974 8625014 41 AAGAAAATTAGATTACAGATCTGGTAAGTGGGAGAGTGTGC AAGAAAATTAGATTACAGATGTGGTAAGTGGGAGAGTGTGC Direct Gain 0 0.922368209114911 NA NA prediction 0.844736418229821 Functional Gain - RAB12 ENSG00000206418 CDS Human protein_coding chr18:8624994 chr18:8624994 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_41677 0 0 1 0 2 RAB12 chr18:8624996 5'GT 8624996 Upstream 3bp 38334 chr1 19018395 19018395 1 + A G STAD 19018395 + 19018375 19018415 41 GACCCACTACCCAGACATATACACCCGCGAGGAGCTGGCGC GACCCACTACCCAGACATATGCACCCGCGAGGAGCTGGCGC Direct Gain 0 0.922358684438169 NA NA prediction 0.844717368876339 Functional Gain - PAX7 ENSG00000009709 CDS Human protein_coding chr1:19018395 chr1:19018395 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_41678 0 0 0 0 1 PAX7 chr1:19018447 5'GT 19018447 Upstream 53bp 38335 chrX 147106438 147106438 1 + A G LGG 147106438 + 147106418 147106458 41 CAGAGTTGTAACGGGTTTGAAGAAACAAAGAAGGAAGCGAA CAGAGTTGTAACGGGTTTGAGGAAACAAAGAAGGAAGCGAA Direct Gain 0 0.922278107704033 NA NA prediction 0.844556215408066 Functional Gain - FMR1NB ENSG00000176988 CDS Human protein_coding chrX:147106438 chrX:147106438 nonsynonymous SNV 0.020 1 21 hm7G_associated_SNPs_41680 0 0 0 0 2 FMR1NB chrX:147106385 3'AG 147106385 Downstream 54bp 38336 chrX 147106438 147106438 1 + A G LGG 147106438 + 147106418 147106458 41 CAGAGTTGTAACGGGTTTGAAGAAACAAAGAAGGAAGCGAA CAGAGTTGTAACGGGTTTGAGGAAACAAAGAAGGAAGCGAA Direct Gain 0 0.922278107704033 NA NA prediction 0.844556215408066 Functional Gain - FMR1NB ENSG00000176988 CDS Human protein_coding chrX:147106438 chrX:147106438 nonsynonymous SNV 0.020 1 21 hm7G_associated_SNPs_41680 0 0 0 0 2 FMR1NB chrX:147106533 5'GT 147106533 Upstream 96bp 38337 chr3 160141381 160141381 1 + C G CESC 160141381 + 160141361 160141401 41 AAGCCACAAGAGTAGCATATCAAAAAGATAGAAGATGGAGA AAGCCACAAGAGTAGCATATGAAAAAGATAGAAGATGGAGA Direct Gain 0 0.922262935802623 NA NA prediction 0.844525871605246 Functional Gain - SMC4 ENSG00000113810 CDS Human protein_coding chr3:160141381 chr3:160141381 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_41681 0 0 1 0 1 SMC4 chr3:160141438 5'GT 160141438 Upstream 58bp 38338 chr15 69732743 69732743 1 + A G BLCA 69732743 + 69732723 69732763 41 AGGCTATTGTTACCGAACCTAAAACTGAGAAGCCAGAGAGA AGGCTATTGTTACCGAACCTGAAACTGAGAAGCCAGAGAGA Direct Gain 0 0.922236339588631 NA NA prediction 0.844472679177262 Functional Gain - KIF23 ENSG00000137807 CDS Human protein_coding chr15:69732743 chr15:69732743 nonsynonymous SNV 0.886 2 21 hm7G_associated_SNPs_41683 0 0 1 0 2 KIF23 chr15:69732647 3'AG 69732647 Downstream 97bp 38339 chr15 69732743 69732743 1 + A G BLCA 69732743 + 69732723 69732763 41 AGGCTATTGTTACCGAACCTAAAACTGAGAAGCCAGAGAGA AGGCTATTGTTACCGAACCTGAAACTGAGAAGCCAGAGAGA Direct Gain 0 0.922236339588631 NA NA prediction 0.844472679177262 Functional Gain - KIF23 ENSG00000137807 CDS Human protein_coding chr15:69732743 chr15:69732743 nonsynonymous SNV 0.886 2 21 hm7G_associated_SNPs_41683 0 0 1 0 2 KIF23 chr15:69732826 5'GT 69732826 Upstream 84bp 38340 chr3 9754491 9754491 1 + A G UCEC 9754491 + 9754471 9754511 41 AGACCCCTTCCTTGTGTTCTACAGGAGCAATGAGGATGGCA AGACCCCTTCCTTGTGTTCTGCAGGAGCAATGAGGATGGCA Direct Gain 0 0.922216628092066 NA NA prediction 0.844433256184132 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9754491 chr3:9754491 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41686 0 0 0 0 2 CPNE9 chr3:9754409 3'AG 9754409 Downstream 83bp 38341 chr3 9754491 9754491 1 + A G UCEC 9754491 + 9754471 9754511 41 AGACCCCTTCCTTGTGTTCTACAGGAGCAATGAGGATGGCA AGACCCCTTCCTTGTGTTCTGCAGGAGCAATGAGGATGGCA Direct Gain 0 0.922216628092066 NA NA prediction 0.844433256184132 Functional Gain - CPNE9 ENSG00000144550 CDS Human protein_coding chr3:9754491 chr3:9754491 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41686 0 0 0 0 2 CPNE9 chr3:9754512 5'GT 9754512 Upstream 22bp 38342 chr19 41285940 41285940 1 + C G LUSC 41285940 + 41285920 41285960 41 TCAGACTTCCTCTTCAAATTCCTGGTGATTGGCAGTGCAGG TCAGACTTCCTCTTCAAATTGCTGGTGATTGGCAGTGCAGG Direct Gain 0 0.922214991526023 NA NA prediction 0.844429983052046 Functional Gain - RAB4B ENSG00000167578;ENSG00000171570;ENSG00000268975 CDS Human other chr19:41285940 chr19:41285940 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41687 0 0 1 0 1 RAB4B chr19:41285924 3'AG 41285924 Downstream 17bp 38343 chr6 125550320 125550320 1 + A G rs140521544 125550320 + 125550300 125550340 41 TCAGCGAAAGAAAGGCATCTAGTTGAGATAAAACAAAAACT TCAGCGAAAGAAAGGCATCTGGTTGAGATAAAACAAAAACT Direct Gain 0 0.922211665628596 NA NA prediction 0.844423331257193 Functional Gain - TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550320 chr6:125550320 synonymous SNV . 0 21 hm7G_associated_SNPs_41688 0 0 1 0 2 TPD52L1 chr6:125550264 3'AG 125550264 Downstream 57bp 38344 chr6 125550320 125550320 1 + A G rs140521544 125550320 + 125550300 125550340 41 TCAGCGAAAGAAAGGCATCTAGTTGAGATAAAACAAAAACT TCAGCGAAAGAAAGGCATCTGGTTGAGATAAAACAAAAACT Direct Gain 0 0.922211665628596 NA NA prediction 0.844423331257193 Functional Gain - TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125550320 chr6:125550320 synonymous SNV . 0 21 hm7G_associated_SNPs_41688 0 0 1 0 2 TPD52L1 chr6:125550412 5'GT 125550412 Upstream 93bp 38345 chr9 95768333 95768333 1 + C G SKCM 95768333 + 95768313 95768353 41 AACCCACGGCTCGGGGACATCCTGCAGAAGCTGGCCCCATT AACCCACGGCTCGGGGACATGCTGCAGAAGCTGGCCCCATT Direct Gain 0 0.922194809966272 NA NA prediction 0.844389619932544 Functional Gain - FGD3 ENSG00000127084 CDS Human protein_coding chr9:95768333 chr9:95768333 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41689 0 0 0 0 1 FGD3 chr9:95768306 3'AG 95768306 Downstream 28bp 38346 chr16 25189412 25189412 1 + C G rs114290096 25189412 + 25189392 25189432 41 CTGGAGGAGACCTGCAAGCTCCCTGAGCGGTGGGCGGGCCT CTGGAGGAGACCTGCAAGCTGCCTGAGCGGTGGGCGGGCCT Direct Gain 0 0.922169426911309 NA NA prediction 0.844338853822618 Functional Gain - LCMT1 ENSG00000205629 CDS Human protein_coding chr16:25189412 chr16:25189412 unknown . 0 21 hm7G_associated_SNPs_41690 0 0 1 0 1 LCMT1 chr16:25189322 3'AG 25189322 Downstream 91bp 38347 chr14 67847404 67847404 1 + T G UCEC 67847404 + 67847384 67847424 41 CTATTTTGGATAGTTTAGATTTGAATGAAGATGAACGGGAA CTATTTTGGATAGTTTAGATGTGAATGAAGATGAACGGGAA Direct Gain 0 0.922161915811242 NA NA prediction 0.844323831622485 Functional Gain - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67847404 chr14:67847404 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41691 0 0 1 0 2 EIF2S1 chr14:67847376 3'AG 67847376 Downstream 29bp 38348 chr14 67847404 67847404 1 + T G UCEC 67847404 + 67847384 67847424 41 CTATTTTGGATAGTTTAGATTTGAATGAAGATGAACGGGAA CTATTTTGGATAGTTTAGATGTGAATGAAGATGAACGGGAA Direct Gain 0 0.922161915811242 NA NA prediction 0.844323831622485 Functional Gain - EIF2S1 ENSG00000134001 CDS Human protein_coding chr14:67847404 chr14:67847404 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41691 0 0 1 0 2 EIF2S1 chr14:67847482 5'GT 67847482 Upstream 79bp 38349 chr1 160326973 160326973 1 + C G LUAD 160326973 + 160326953 160326993 41 GTGGAGCTCTACTGAATACTCTACATGGACTGAGAGCCGCT GTGGAGCTCTACTGAATACTGTACATGGACTGAGAGCCGCT Direct Gain 0 0.92213489918547 NA NA prediction 0.84426979837094 Functional Gain - NCSTN ENSG00000162736 CDS Human protein_coding chr1:160326973 chr1:160326973 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_41693 0 0 1 0 1 NCSTN chr1:160327043 5'GT 160327043 Upstream 71bp 38350 chr10 103987391 103987391 1 + C G LUSC 103987391 + 103987371 103987411 41 TCTGCTTGCCAGGGCAACCTCATTCCCCATAGCCCTGATCT TCTGCTTGCCAGGGCAACCTGATTCCCCATAGCCCTGATCT Direct Gain 0 0.922133953594176 NA NA prediction 0.844267907188352 Functional Gain - ELOVL3 ENSG00000119915 CDS Human protein_coding chr10:103987391 chr10:103987391 stopgain 0.845 0 21 hm7G_associated_SNPs_41694 0 0 0 0 1 ELOVL3 chr10:103987383 3'AG 103987383 Downstream 9bp 38351 chr6 153019200 153019200 1 + A G STAD 153019200 + 153019180 153019220 41 TTATGGCTAATAACACAACAAGTTTAGGGAGTCCATGGCCA TTATGGCTAATAACACAACAGGTTTAGGGAGTCCATGGCCA Direct Gain 0 0.922130096417422 NA NA prediction 0.844260192834845 Functional Gain - MYCT1 ENSG00000120279 CDS Human protein_coding chr6:153019200 chr6:153019200 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41695 0 0 0 0 1 MYCT1 chr6:153019233 5'GT 153019233 Upstream 34bp 38352 chr2 27838044 27838044 1 + A G BRCA 27838044 + 27838024 27838064 41 TTGTCTTGTAGTTAAAATATACTCGTCCAGGGCTCCCTACC TTGTCTTGTAGTTAAAATATGCTCGTCCAGGGCTCCCTACC Direct Gain 0 0.922124333119154 NA NA prediction 0.844248666238308 Functional Gain - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27838044 chr2:27838044 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41697 0 0 1 0 2 ZNF512 chr2:27838035 3'AG 27838035 Downstream 10bp 38353 chr2 27838044 27838044 1 + A G BRCA 27838044 + 27838024 27838064 41 TTGTCTTGTAGTTAAAATATACTCGTCCAGGGCTCCCTACC TTGTCTTGTAGTTAAAATATGCTCGTCCAGGGCTCCCTACC Direct Gain 0 0.922124333119154 NA NA prediction 0.844248666238308 Functional Gain - ZNF512 ENSG00000243943 CDS Human protein_coding chr2:27838044 chr2:27838044 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41697 0 0 1 0 2 ZNF512 chr2:27838136 5'GT 27838136 Upstream 93bp 38354 chrX 48382414 48382414 1 + C G CESC 48382414 + 48382394 48382434 41 ATCGAGGGCTGGTTCGTTCTCTACTACGAAGACCTGCTTGG ATCGAGGGCTGGTTCGTTCTGTACTACGAAGACCTGCTTGG Direct Gain 0 0.922108792489049 NA NA prediction 0.844217584978098 Functional Gain - EBP ENSG00000147155 CDS Human protein_coding chrX:48382414 chrX:48382414 synonymous SNV . 0 21 hm7G_associated_SNPs_41698 0 0 1 0 1 EBP chrX:48382460 5'GT 48382460 Upstream 47bp 38355 chr19 5691620 5691620 1 + C G ESCA 5691620 + 5691600 5691640 41 GCCATGAGGAAAGCTGCTGCCAAGAAAGACTGAGCCCCTCC GCCATGAGGAAAGCTGCTGCGAAGAAAGACTGAGCCCCTCC Direct Gain 0 0.922094957742719 NA NA prediction 0.844189915485438 Functional Gain - RPL36 ENSG00000130255 CDS Human protein_coding chr19:5691620 chr19:5691620 synonymous SNV . 0 21 hm7G_associated_SNPs_41700 0 0 1 0 1 RPL36 chr19:5691543 3'AG 5691543 Downstream 78bp 38356 chr11 45926322 45926322 1 + C G HNSC 45926322 + 45926302 45926342 41 AACCCGCCCTCCAGCTGTGTCCTGGAGATCAGCGTGCGGGG AACCCGCCCTCCAGCTGTGTGCTGGAGATCAGCGTGCGGGG Direct Gain 0 0.922080337124995 NA NA prediction 0.84416067424999 Functional Gain - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926322 chr11:45926322 synonymous SNV . 0 21 hm7G_associated_SNPs_41702 0 0 0 0 2 MAPK8IP1 chr11:45926269 3'AG 45926269 Downstream 54bp 38357 chr11 45926322 45926322 1 + C G HNSC 45926322 + 45926302 45926342 41 AACCCGCCCTCCAGCTGTGTCCTGGAGATCAGCGTGCGGGG AACCCGCCCTCCAGCTGTGTGCTGGAGATCAGCGTGCGGGG Direct Gain 0 0.922080337124995 NA NA prediction 0.84416067424999 Functional Gain - MAPK8IP1 ENSG00000121653 CDS Human protein_coding chr11:45926322 chr11:45926322 synonymous SNV . 0 21 hm7G_associated_SNPs_41702 0 0 0 0 2 MAPK8IP1 chr11:45926385 5'GT 45926385 Upstream 64bp 38358 chr11 113266105 113266105 1 + A G LIHC 113266105 + 113266085 113266125 41 GCAATTGTCATCTGGGAGCTACTCACTCAGAAGAAACCATA GCAATTGTCATCTGGGAGCTGCTCACTCAGAAGAAACCATA Direct Gain 0 0.922075675932084 NA NA prediction 0.844151351864168 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113266105 chr11:113266105 synonymous SNV . 0 21 hm7G_associated_SNPs_41703 0 0 0 0 2 ANKK1 chr11:113266081 3'AG 113266081 Downstream 25bp 38359 chr11 113266105 113266105 1 + A G LIHC 113266105 + 113266085 113266125 41 GCAATTGTCATCTGGGAGCTACTCACTCAGAAGAAACCATA GCAATTGTCATCTGGGAGCTGCTCACTCAGAAGAAACCATA Direct Gain 0 0.922075675932084 NA NA prediction 0.844151351864168 Functional Gain - ANKK1 ENSG00000170209 CDS Human protein_coding chr11:113266105 chr11:113266105 synonymous SNV . 0 21 hm7G_associated_SNPs_41703 0 0 0 0 2 ANKK1 chr11:113266130 5'GT 113266130 Upstream 26bp 38360 chr7 130027667 130027667 1 + C G LUAD 130027667 + 130027647 130027687 41 ATTTTACTCCTGCCCCAGATCAAGCCAGTGGAAGCACTATT ATTTTACTCCTGCCCCAGATGAAGCCAGTGGAAGCACTATT Direct Gain 0 0.922051973477266 NA NA prediction 0.844103946954532 Functional Gain - CPA1 ENSG00000091704 CDS Human protein_coding chr7:130027667 chr7:130027667 nonsynonymous SNV 0.967 1 21 hm7G_associated_SNPs_41704 0 0 0 0 1 CPA1 chr7:130027665 3'AG 130027665 Downstream 3bp 38361 chr11 64795047 64795047 1 + A G UCEC 64795047 + 64795027 64795067 41 GGATGACTTCCTGCGGCACTACACAGTGTCGGACCCCAGGA GGATGACTTCCTGCGGCACTGCACAGTGTCGGACCCCAGGA Direct Gain 0 0.922037969914868 NA NA prediction 0.844075939829736 Functional Gain - SNX15 ENSG00000110025 CDS Human protein_coding chr11:64795047 chr11:64795047 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_41705 0 0 1 0 1 SNX15 chr11:64795108 5'GT 64795108 Upstream 62bp 38362 chr9 15453088 15453088 1 + C G HNSC 15453088 + 15453068 15453108 41 ATAGAGGCTATGGAAAGTTTCAGACTGCTAGAATGGAAGAT ATAGAGGCTATGGAAAGTTTGAGACTGCTAGAATGGAAGAT Direct Gain 0 0.921991718325946 NA NA prediction 0.843983436651892 Functional Gain - SNAPC3 ENSG00000164975 CDS Human protein_coding chr9:15453088 chr9:15453088 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41706 0 0 1 1 1 SNAPC3 chr9:15453039 3'AG 15453039 Downstream 50bp 38363 chr4 73003851 73003851 1 + A G UCEC 73003851 + 73003831 73003871 41 ACGTTAGTTGCAATTGCTGTAGATAGGTAAGTCTGCACCAA ACGTTAGTTGCAATTGCTGTGGATAGGTAAGTCTGCACCAA Direct Gain 0 0.92198950967909 NA NA prediction 0.843979019358181 Functional Gain - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:73003851 chr4:73003851 nonsynonymous SNV 0.958 1 21 hm7G_associated_SNPs_41707 0 0 0 0 2 NPFFR2 chr4:73003757 3'AG 73003757 Downstream 95bp 38364 chr4 73003851 73003851 1 + A G UCEC 73003851 + 73003831 73003871 41 ACGTTAGTTGCAATTGCTGTAGATAGGTAAGTCTGCACCAA ACGTTAGTTGCAATTGCTGTGGATAGGTAAGTCTGCACCAA Direct Gain 0 0.92198950967909 NA NA prediction 0.843979019358181 Functional Gain - NPFFR2 ENSG00000056291 CDS Human protein_coding chr4:73003851 chr4:73003851 nonsynonymous SNV 0.958 1 21 hm7G_associated_SNPs_41707 0 0 0 0 2 NPFFR2 chr4:73003856 5'GT 73003856 Upstream 6bp 38365 chr8 74891062 74891062 1 + A G UCEC 74891062 + 74891042 74891082 41 AAATCAGAAGATGGAAGGCTAATTTATACTGGCAATATGGC AAATCAGAAGATGGAAGGCTGATTTATACTGGCAATATGGC Direct Gain 0 0.921973868356112 NA NA prediction 0.843947736712224 Functional Gain - TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74891062 chr8:74891062 synonymous SNV . 0 21 hm7G_associated_SNPs_41708 0 0 1 0 3 TMEM70 chr8:74890991 3'AG 74890991 Downstream 72bp 38366 chr8 74891062 74891062 1 + A G UCEC 74891062 + 74891042 74891082 41 AAATCAGAAGATGGAAGGCTAATTTATACTGGCAATATGGC AAATCAGAAGATGGAAGGCTGATTTATACTGGCAATATGGC Direct Gain 0 0.921973868356112 NA NA prediction 0.843947736712224 Functional Gain - TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74891062 chr8:74891062 synonymous SNV . 0 21 hm7G_associated_SNPs_41708 0 0 1 0 3 TMEM70 chr8:74891096 5'GT 74891096 Upstream 35bp 38367 chr8 74891062 74891062 1 + A G UCEC 74891062 + 74891042 74891082 41 AAATCAGAAGATGGAAGGCTAATTTATACTGGCAATATGGC AAATCAGAAGATGGAAGGCTGATTTATACTGGCAATATGGC Direct Gain 0 0.921973868356112 NA NA prediction 0.843947736712224 Functional Gain - TMEM70 ENSG00000175606 CDS Human protein_coding chr8:74891062 chr8:74891062 synonymous SNV . 0 21 hm7G_associated_SNPs_41708 0 0 1 0 3 TMEM70 chr8:74891110 5'GT 74891110 Upstream 49bp 38368 chr9 136501793 136501793 1 + C G BLCA 136501793 + 136501773 136501813 41 GAGCTTGAGAACGCAGATCTCGTGGTGCTCTGGACCGATGG GAGCTTGAGAACGCAGATCTGGTGGTGCTCTGGACCGATGG Direct Gain 0 0.921963119130791 NA NA prediction 0.843926238261582 Functional Gain - DBH ENSG00000123454 CDS Human protein_coding chr9:136501793 chr9:136501793 synonymous SNV . 0 21 hm7G_associated_SNPs_41710 0 0 0 0 1 DBH chr9:136501832 5'GT 136501832 Upstream 40bp 38369 chr12 58018651 58018651 1 + C G LUAD 58018651 + 58018631 58018671 41 GATCCTTTGACCTCTTAGCTCCTCCAGGTCCCGGGGCTCTG GATCCTTTGACCTCTTAGCTGCTCCAGGTCCCGGGGCTCTG Direct Gain 0 0.921914518886319 NA NA prediction 0.843829037772638 Functional Gain - SLC26A10 ENSG00000135502 CDS Human protein_coding chr12:58018651 chr12:58018651 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_41712 0 0 0 0 1 SLC26A10 chr12:58018649 3'AG 58018649 Downstream 3bp 38370 chr12 9089904 9089904 1 + T G UCEC 9089904 + 9089884 9089924 41 GACATTGCCCGTGCCAAGATTCAGGGCAAGTGCCACCGGGT GACATTGCCCGTGCCAAGATGCAGGGCAAGTGCCACCGGGT Direct Gain 0 0.921884318761153 NA NA prediction 0.843768637522306 Functional Gain - PHC1 ENSG00000111752 CDS Human protein_coding chr12:9089904 chr12:9089904 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41714 0 0 0 0 1 PHC1 chr12:9089922 5'GT 9089922 Upstream 19bp 38371 chr22 29141932 29141932 1 + C G PRAD 29141932 + 29141912 29141952 41 CTCATAGAAATAATGGAAATCAATGAAAAACTCGCAGAAGC CTCATAGAAATAATGGAAATGAATGAAAAACTCGCAGAAGC Direct Gain 0 0.921850563610879 NA NA prediction 0.843701127221757 Functional Gain - HSCB ENSG00000100209 CDS Human protein_coding chr22:29141932 chr22:29141932 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41715 0 0 1 0 2 HSCB chr22:29141852 3'AG 29141852 Downstream 81bp 38372 chr22 29141932 29141932 1 + C G PRAD 29141932 + 29141912 29141952 41 CTCATAGAAATAATGGAAATCAATGAAAAACTCGCAGAAGC CTCATAGAAATAATGGAAATGAATGAAAAACTCGCAGAAGC Direct Gain 0 0.921850563610879 NA NA prediction 0.843701127221757 Functional Gain - HSCB ENSG00000100209 CDS Human protein_coding chr22:29141932 chr22:29141932 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41715 0 0 1 0 2 HSCB chr22:29141996 5'GT 29141996 Upstream 65bp 38373 chr1 24779932 24779932 1 + A G UCEC 24779932 + 24779912 24779952 41 TCTGTTCTGCTTGCTGCTCTACTTCTACAAGGAGAAGAACG TCTGTTCTGCTTGCTGCTCTGCTTCTACAAGGAGAAGAACG Direct Gain 0 0.921839309420609 NA NA prediction 0.843678618841219 Functional Gain - NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24779932 chr1:24779932 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_41716 0 0 1 0 2 NIPAL3 chr1:24779898 3'AG 24779898 Downstream 35bp 38374 chr1 24779932 24779932 1 + A G UCEC 24779932 + 24779912 24779952 41 TCTGTTCTGCTTGCTGCTCTACTTCTACAAGGAGAAGAACG TCTGTTCTGCTTGCTGCTCTGCTTCTACAAGGAGAAGAACG Direct Gain 0 0.921839309420609 NA NA prediction 0.843678618841219 Functional Gain - NIPAL3 ENSG00000001461 CDS Human protein_coding chr1:24779932 chr1:24779932 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_41716 0 0 1 0 2 NIPAL3 chr1:24779994 5'GT 24779994 Upstream 63bp 38375 chr17 61908556 61908556 1 + C G rs13030 61908556 + 61908536 61908576 41 CTGGAGTTGCTCAACCAGCTCGACGGCTTTGAGGCCACCAA CTGGAGTTGCTCAACCAGCTGGACGGCTTTGAGGCCACCAA Direct Gain 0 0.921833595333399 NA NA prediction 0.843667190666797 Functional Gain - PSMC5 ENSG00000087191 CDS Human protein_coding chr17:61908556 chr17:61908556 synonymous SNV . 0 21 hm7G_associated_SNPs_41717 0 0 1 0 1 PSMC5 chr17:61908586 5'GT 61908586 Upstream 31bp 38376 chr2 163215601 163215601 1 + A G rs146161584 163215601 + 163215581 163215621 41 CTACTATTGTTAAACGTTATAGCAAGAATGGCAGAATTTTC CTACTATTGTTAAACGTTATGGCAAGAATGGCAGAATTTTC Direct Gain 0 0.921805377474796 NA NA prediction 0.843610754949592 Functional Gain - GCA ENSG00000115271 CDS Human protein_coding chr2:163215601 chr2:163215601 nonsynonymous SNV 0.991 2 21 hm7G_associated_SNPs_41720 0 0 1 0 2 GCA chr2:163215554 3'AG 163215554 Downstream 48bp 38377 chr2 163215601 163215601 1 + A G rs146161584 163215601 + 163215581 163215621 41 CTACTATTGTTAAACGTTATAGCAAGAATGGCAGAATTTTC CTACTATTGTTAAACGTTATGGCAAGAATGGCAGAATTTTC Direct Gain 0 0.921805377474796 NA NA prediction 0.843610754949592 Functional Gain - GCA ENSG00000115271 CDS Human protein_coding chr2:163215601 chr2:163215601 nonsynonymous SNV 0.991 2 21 hm7G_associated_SNPs_41720 0 0 1 0 2 GCA chr2:163215667 5'GT 163215667 Upstream 67bp 38378 chrX 49597217 49597217 1 + C G LUAD 49597217 + 49597197 49597237 41 CTGATGTAAAAGAGAAGACTCCACCTAATCCTAAGCATGCT CTGATGTAAAAGAGAAGACTGCACCTAATCCTAAGCATGCT Direct Gain 0 0.921795870625355 NA NA prediction 0.843591741250711 Functional Gain - PAGE4 ENSG00000101951 CDS Human protein_coding chrX:49597217 chrX:49597217 nonsynonymous SNV 0.324 2 21 hm7G_associated_SNPs_41721 0 0 0 0 2 PAGE4 chrX:49597128 3'AG 49597128 Downstream 90bp 38379 chrX 49597217 49597217 1 + C G LUAD 49597217 + 49597197 49597237 41 CTGATGTAAAAGAGAAGACTCCACCTAATCCTAAGCATGCT CTGATGTAAAAGAGAAGACTGCACCTAATCCTAAGCATGCT Direct Gain 0 0.921795870625355 NA NA prediction 0.843591741250711 Functional Gain - PAGE4 ENSG00000101951 CDS Human protein_coding chrX:49597217 chrX:49597217 nonsynonymous SNV 0.324 2 21 hm7G_associated_SNPs_41721 0 0 0 0 2 PAGE4 chrX:49597253 5'GT 49597253 Upstream 37bp 38380 chr20 21367612 21367612 1 + C G CESC 21367612 + 21367592 21367632 41 TAGCTGGGCCTGGTGGGTATCCACCCAGACGAGATGATCGT TAGCTGGGCCTGGTGGGTATGCACCCAGACGAGATGATCGT Direct Gain 0 0.921795381468725 NA NA prediction 0.84359076293745 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21367612 chr20:21367612 nonsynonymous SNV 0.940 1 21 hm7G_associated_SNPs_41722 0 0 1 0 1 XRN2 chr20:21367644 5'GT 21367644 Upstream 33bp 38381 chr12 96252833 96252833 1 + A G rs17024783 96252833 + 96252813 96252853 41 TCGGCAGAGAGTAGCCTGCAACATTCGGCCGTGGTTACGAT TCGGCAGAGAGTAGCCTGCAGCATTCGGCCGTGGTTACGAT Direct Gain 0 0.921776563021572 NA NA prediction 0.843553126043144 Functional Gain - SNRPF ENSG00000139343 UTR5 Human protein_coding chr12:96252833 chr12:96252833 . . 0 21 hm7G_associated_SNPs_41724 0 0 1 0 1 SNRPF chr12:96252854 5'GT 96252854 Upstream 22bp 38382 chr3 126138534 126138534 1 + C G LUAD 126138534 + 126138514 126138554 41 TACAAGGTCTATAAGGATTTCCTATACAAGCTGTCGCCCAA TACAAGGTCTATAAGGATTTGCTATACAAGCTGTCGCCCAA Direct Gain 0 0.921764876210361 NA NA prediction 0.843529752420723 Functional Gain - CFAP100 ENSG00000163885 CDS Human protein_coding chr3:126138534 chr3:126138534 nonsynonymous SNV 0.750 4 21 hm7G_associated_SNPs_41725 0 0 0 0 1 CFAP100 chr3:126138480 3'AG 126138480 Downstream 55bp 38383 chr5 170819929 170819929 1 + A G LUSC 170819929 + 170819909 170819949 41 TTTTAAAAGAAAAAAGTAAAACTTGCTGCTGATGAAGATGA TTTTAAAAGAAAAAAGTAAAGCTTGCTGCTGATGAAGATGA Direct Gain 0 0.921754871247976 NA NA prediction 0.843509742495951 Functional Gain - NPM1 ENSG00000181163 CDS Human protein_coding chr5:170819929 chr5:170819929 synonymous SNV . 0 21 hm7G_associated_SNPs_41726 0 0 1 0 1 NPM1 chr5:170819918 3'AG 170819918 Downstream 12bp 38384 chr3 73004489 73004489 1 + A G UCEC 73004489 + 73004469 73004509 41 ATTTAACTCGGATAAGAAGTACCCAGTTCAAGGTAAACGAG ATTTAACTCGGATAAGAAGTGCCCAGTTCAAGGTAAACGAG Direct Gain 0 0.9217485141956 NA NA prediction 0.8434970283912 Functional Gain - GXYLT2 ENSG00000172986 CDS Human protein_coding chr3:73004489 chr3:73004489 nonsynonymous SNV 0.979 0 21 hm7G_associated_SNPs_41728 0 0 1 0 1 GXYLT2 chr3:73004500 5'GT 73004500 Upstream 12bp 38385 chr15 45253745 45253745 1 + T G UCEC 45253745 + 45253725 45253765 41 AAGAAGAAAAATTGGTAGTTTTATTTGGGAACAAGACCAAC AAGAAGAAAAATTGGTAGTTGTATTTGGGAACAAGACCAAC Direct Gain 0 0.921743557273407 NA NA prediction 0.843487114546814 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45253745 chr15:45253745 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41729 0 0 0 0 2 TERB2 chr15:45253721 3'AG 45253721 Downstream 25bp 38386 chr15 45253745 45253745 1 + T G UCEC 45253745 + 45253725 45253765 41 AAGAAGAAAAATTGGTAGTTTTATTTGGGAACAAGACCAAC AAGAAGAAAAATTGGTAGTTGTATTTGGGAACAAGACCAAC Direct Gain 0 0.921743557273407 NA NA prediction 0.843487114546814 Functional Gain - TERB2 ENSG00000167014 CDS Human protein_coding chr15:45253745 chr15:45253745 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41729 0 0 0 0 2 TERB2 chr15:45253782 5'GT 45253782 Upstream 38bp 38387 chr7 127230141 127230141 1 + A G LIHC 127230141 + 127230121 127230161 41 GCCTCATCTTTGTGGTGGACAGTAATGACCGGGAGCGGGTC GCCTCATCTTTGTGGTGGACGGTAATGACCGGGAGCGGGTC Direct Gain 0 0.921738089385124 NA NA prediction 0.843476178770249 Functional Gain - ARF5 ENSG00000004059 CDS Human protein_coding chr7:127230141 chr7:127230141 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41730 0 0 1 0 1 ARF5 chr7:127230120 3'AG 127230120 Downstream 22bp 38388 chr6 74115412 74115412 1 + T G UCEC 74115412 + 74115392 74115432 41 TTCTTTGAAGGAAAGAAAATTTTAATATAACGTGGGATGAC TTCTTTGAAGGAAAGAAAATGTTAATATAACGTGGGATGAC Direct Gain 0 0.921707972746875 NA NA prediction 0.84341594549375 Functional Gain - DDX43 ENSG00000080007 CDS Human protein_coding chr6:74115412 chr6:74115412 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_41732 0 0 0 1 1 DDX43 chr6:74115402 3'AG 74115402 Downstream 11bp 38389 chr5 179018663 179018663 1 + A G UCEC 179018663 + 179018643 179018683 41 CAAAGTTGAGCTGGAGACTTACAAGCAAACTCGGCAAGGTC CAAAGTTGAGCTGGAGACTTGCAAGCAAACTCGGCAAGGTC Direct Gain 0 0.921703173574918 NA NA prediction 0.843406347149837 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179018663 chr5:179018663 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41733 0 0 1 0 2 RUFY1 chr5:179018626 3'AG 179018626 Downstream 38bp 38390 chr5 179018663 179018663 1 + A G UCEC 179018663 + 179018643 179018683 41 CAAAGTTGAGCTGGAGACTTACAAGCAAACTCGGCAAGGTC CAAAGTTGAGCTGGAGACTTGCAAGCAAACTCGGCAAGGTC Direct Gain 0 0.921703173574918 NA NA prediction 0.843406347149837 Functional Gain - RUFY1 ENSG00000176783 CDS Human protein_coding chr5:179018663 chr5:179018663 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41733 0 0 1 0 2 RUFY1 chr5:179018742 5'GT 179018742 Upstream 80bp 38391 chr2 101885758 101885758 1 + A G LUSC 101885758 + 101885738 101885778 41 AATGTACAGGATTTGTTTATAGAAGTGCAGGCATTCTGTAT AATGTACAGGATTTGTTTATGGAAGTGCAGGCATTCTGTAT Direct Gain 0 0.921688982156112 NA NA prediction 0.843377964312224 Functional Gain - CNOT11 ENSG00000158435 CDS Human protein_coding chr2:101885758 chr2:101885758 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41735 0 0 1 0 1 CNOT11 chr2:101885678 3'AG 101885678 Downstream 81bp 38392 chr20 18724808 18724808 1 + C G COAD 18724808 + 18724788 18724828 41 AGCTAAGGGACCTTCTGAATCAAGCAAGGAAAGAAACACTC AGCTAAGGGACCTTCTGAATGAAGCAAGGAAAGAAACACTC Direct Gain 0 0.921686189576097 NA NA prediction 0.843372379152194 Functional Gain - DTD1 ENSG00000125821 CDS Human protein_coding chr20:18724808 chr20:18724808 stopgain 1.000 1 21 hm7G_associated_SNPs_41736 0 0 1 0 1 DTD1 chr20:18724744 3'AG 18724744 Downstream 65bp 38393 chr16 2017804 2017804 1 + T G rs146108433 2017804 + 2017784 2017824 41 AATAAACTCCGGAAAACCATTGGCCGCCTGGAAGTCAAGGT AATAAACTCCGGAAAACCATGGGCCGCCTGGAAGTCAAGGT Direct Gain 0 0.921681890081909 NA NA prediction 0.843363780163819 Functional Gain - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2017804 chr16:2017804 nonsynonymous SNV 0.984 4 21 hm7G_associated_SNPs_41737 0 0 0 0 2 RNF151 chr16:2017726 3'AG 2017726 Downstream 79bp 38394 chr16 2017804 2017804 1 + T G rs146108433 2017804 + 2017784 2017824 41 AATAAACTCCGGAAAACCATTGGCCGCCTGGAAGTCAAGGT AATAAACTCCGGAAAACCATGGGCCGCCTGGAAGTCAAGGT Direct Gain 0 0.921681890081909 NA NA prediction 0.843363780163819 Functional Gain - RNF151 ENSG00000179580 CDS Human protein_coding chr16:2017804 chr16:2017804 nonsynonymous SNV 0.984 4 21 hm7G_associated_SNPs_41737 0 0 0 0 2 RNF151 chr16:2017822 5'GT 2017822 Upstream 19bp 38395 chr19 36365430 36365430 1 + C G CESC 36365430 + 36365410 36365450 41 TCCAGTCCATTCTGCAGACTCTGGAGGAGCAGGTGTCTGGT TCCAGTCCATTCTGCAGACTGTGGAGGAGCAGGTGTCTGGT Direct Gain 0 0.921659870544276 NA NA prediction 0.843319741088552 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36365430 chr19:36365430 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_41738 0 0 0 0 1 APLP1 chr19:36365406 3'AG 36365406 Downstream 25bp 38396 chr20 42247631 42247631 1 + C G CESC 42247631 + 42247611 42247651 41 CATGTCACATGTTCAGTGATCAATATTTGGACAAAGAAGAA CATGTCACATGTTCAGTGATGAATATTTGGACAAAGAAGAA Direct Gain 0 0.921654791717025 NA NA prediction 0.843309583434051 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42247631 chr20:42247631 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41740 0 0 1 0 2 IFT52 chr20:42247580 3'AG 42247580 Downstream 52bp 38397 chr20 42247631 42247631 1 + C G CESC 42247631 + 42247611 42247651 41 CATGTCACATGTTCAGTGATCAATATTTGGACAAAGAAGAA CATGTCACATGTTCAGTGATGAATATTTGGACAAAGAAGAA Direct Gain 0 0.921654791717025 NA NA prediction 0.843309583434051 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42247631 chr20:42247631 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41740 0 0 1 0 2 IFT52 chr20:42247666 5'GT 42247666 Upstream 36bp 38398 chr20 1209144 1209144 1 + A G UCEC 1209144 + 1209124 1209164 41 TAAACGAGGGCCATTGGCCAAAATATGGCTTGCAGCTCACT TAAACGAGGGCCATTGGCCAGAATATGGCTTGCAGCTCACT Direct Gain 0 0.9216508288646 NA NA prediction 0.8433016577292 Functional Gain - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1209144 chr20:1209144 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41742 0 0 0 0 2 RAD21L1 chr20:1209066 3'AG 1209066 Downstream 79bp 38399 chr20 1209144 1209144 1 + A G UCEC 1209144 + 1209124 1209164 41 TAAACGAGGGCCATTGGCCAAAATATGGCTTGCAGCTCACT TAAACGAGGGCCATTGGCCAGAATATGGCTTGCAGCTCACT Direct Gain 0 0.9216508288646 NA NA prediction 0.8433016577292 Functional Gain - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1209144 chr20:1209144 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41742 0 0 0 0 2 RAD21L1 chr20:1209241 5'GT 1209241 Upstream 98bp 38400 chr1 43825190 43825190 1 + C G LUAD 43825190 + 43825170 43825210 41 GTTCCAAGGTTCAGACCACTCCTAGCAAACCTGGCGGTGAC GTTCCAAGGTTCAGACCACTGCTAGCAAACCTGGCGGTGAC Direct Gain 0 0.921647016694854 NA NA prediction 0.843294033389709 Functional Gain - CDC20 ENSG00000117399 CDS Human protein_coding chr1:43825190 chr1:43825190 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_41743 0 0 1 0 1 CDC20 chr1:43825161 3'AG 43825161 Downstream 30bp 38401 chr17 902102 902102 1 + A G COAD 902102 + 902082 902122 41 ACCCTAAGGATCCTTACCGTACACCGACTGCAAAAGAAGTG ACCCTAAGGATCCTTACCGTGCACCGACTGCAAAAGAAGTG Direct Gain 0 0.92164240783422 NA NA prediction 0.84328481566844 Functional Gain - TIMM22 ENSG00000177370 CDS Human protein_coding chr17:902102 chr17:902102 nonsynonymous SNV 0.933 1 21 hm7G_associated_SNPs_41744 0 0 1 0 1 TIMM22 chr17:902019 3'AG 902019 Downstream 84bp 38402 chr10 126519940 126519940 1 + A G LIHC 126519940 + 126519920 126519960 41 AGTGTGTGCAGATGTTGAAAAGAGTGAGCGAGTTGTTGAAT AGTGTGTGCAGATGTTGAAAGGAGTGAGCGAGTTGTTGAAT Direct Gain 0 0.921614947297338 NA NA prediction 0.843229894594676 Functional Gain - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126519940 chr10:126519940 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41746 0 0 1 0 2 ABRAXAS2 chr10:126519918 3'AG 126519918 Downstream 23bp 38403 chr10 126519940 126519940 1 + A G LIHC 126519940 + 126519920 126519960 41 AGTGTGTGCAGATGTTGAAAAGAGTGAGCGAGTTGTTGAAT AGTGTGTGCAGATGTTGAAAGGAGTGAGCGAGTTGTTGAAT Direct Gain 0 0.921614947297338 NA NA prediction 0.843229894594676 Functional Gain - ABRAXAS2 ENSG00000165660 CDS Human protein_coding chr10:126519940 chr10:126519940 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41746 0 0 1 0 2 ABRAXAS2 chr10:126520032 5'GT 126520032 Upstream 93bp 38404 chrX 153008970 153008970 1 + C G rs76637913 153008970 + 153008950 153008990 41 CACACACACTTGCTACAGTTCGATGGGGAGGGCGGCTGGAA CACACACACTTGCTACAGTTGGATGGGGAGGGCGGCTGGAA Direct Gain 0 0.921607513923709 NA NA prediction 0.843215027847418 Functional Gain - ABCD1 ENSG00000101986 CDS Human protein_coding chrX:153008970 chrX:153008970 nonsynonymous SNV 0.818 4 21 hm7G_associated_SNPs_41747 0 0 0 0 1 ABCD1 chrX:153008943 3'AG 153008943 Downstream 28bp 38405 chrX 152031145 152031145 1 + C G CESC 152031145 + 152031125 152031165 41 ACCTTCCTCTGTCAGAAACTCATTTTAACCAGCAGTGCCAG ACCTTCCTCTGTCAGAAACTGATTTTAACCAGCAGTGCCAG Direct Gain 0 0.921603587141603 NA NA prediction 0.843207174283205 Functional Gain - NSDHL ENSG00000147383 CDS Human protein_coding chrX:152031145 chrX:152031145 synonymous SNV . 0 21 hm7G_associated_SNPs_41749 0 0 1 0 1 NSDHL chrX:152031140 3'AG 152031140 Downstream 6bp 38406 chrY 22930849 22930849 1 + C G STAD 22930849 + 22930829 22930869 41 GGGAAGATAACCAGCTTTATCAAATTTGACACAGGTAAGGT GGGAAGATAACCAGCTTTATGAAATTTGACACAGGTAAGGT Direct Gain 0 0.921598133969061 NA NA prediction 0.843196267938122 Functional Gain - RPS4Y2 ENSG00000157828 CDS Human other chrY:22930849 chrY:22930849 nonsynonymous SNV 0.086 0 21 hm7G_associated_SNPs_41752 0 0 0 0 1 RPS4Y2 chrY:22930862 5'GT 22930862 Upstream 14bp 38407 chr3 122943997 122943997 1 + C G OV 122943997 + 122943977 122944017 41 GATATAATAATCCCAGGTCTCTTTCAACAAAGATAAATCTT GATATAATAATCCCAGGTCTGTTTCAACAAAGATAAATCTT Direct Gain 0 0.921584588000332 NA NA prediction 0.843169176000665 Functional Gain - SEC22A ENSG00000121542 CDS Human protein_coding chr3:122943997 chr3:122943997 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41753 0 0 1 0 1 SEC22A chr3:122943950 3'AG 122943950 Downstream 48bp 38408 chr9 129453255 129453255 1 + T G CESC 129453255 + 129453235 129453275 41 GCTACGCAAGGGCGACGAATTCGTGCTCAAGGAGGGCCAGC GCTACGCAAGGGCGACGAATGCGTGCTCAAGGAGGGCCAGC Direct Gain 0 0.921557449235332 NA NA prediction 0.843114898470663 Functional Gain - LMX1B ENSG00000136944 CDS Human protein_coding chr9:129453255 chr9:129453255 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_41758 0 0 1 0 1 LMX1B chr9:129453347 5'GT 129453347 Upstream 93bp 38409 chr1 10511509 10511509 1 + C G LUAD 10511509 + 10511489 10511529 41 GGTGGTTTGAGTGGACCTCCCAGGCCAGTGCCGGGCCCCTC GGTGGTTTGAGTGGACCTCCGAGGCCAGTGCCGGGCCCCTC Direct Gain 0 0.921555611079031 NA NA prediction 0.843111222158063 Functional Gain - CENPS-CORT;CORT ENSG00000175279;ENSG00000241563;ENSG00000251503 CDS Human other chr1:10511509 chr1:10511509 nonsynonymous SNV 0.905 1 21 hm7G_associated_SNPs_41759 0 0 0 0 1 CENPS-CORT;CORT chr1:10511434 3'AG 10511434 Downstream 76bp 38410 chr2 74173950 74173950 1 + A G COAD 74173950 + 74173930 74173970 41 TCCTTTTTGAGCCGCCTGAAAGTACAGCTGGAGCCCTTCCC TCCTTTTTGAGCCGCCTGAAGGTACAGCTGGAGCCCTTCCC Direct Gain 0 0.921544439250277 NA NA prediction 0.843088878500554 Functional Gain - DGUOK ENSG00000114956 CDS Human protein_coding chr2:74173950 chr2:74173950 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_41760 0 0 1 0 1 DGUOK chr2:74174033 5'GT 74174033 Upstream 84bp 38411 chr2 85770131 85770131 1 + C G BLCA 85770131 + 85770111 85770151 41 GAGATTGTGAAGAAGAATTTCGATCTCCGCCCTGGGGTCAT GAGATTGTGAAGAAGAATTTGGATCTCCGCCCTGGGGTCAT Direct Gain 0 0.921543218069068 NA NA prediction 0.843086436138137 Functional Gain - MAT2A ENSG00000168906 CDS Human protein_coding chr2:85770131 chr2:85770131 nonsynonymous SNV 0.997 5 21 hm7G_associated_SNPs_41761 0 0 1 0 1 MAT2A chr2:85770157 5'GT 85770157 Upstream 27bp 38412 chr1 163313614 163313614 1 + A G COAD 163313614 + 163313594 163313634 41 TCCAGAGAAGTTAAAGAATTATAAAGAAAAAATGAAAGATA TCCAGAGAAGTTAAAGAATTGTAAAGAAAAAATGAAAGATA Direct Gain 0 0.921510517643098 NA NA prediction 0.843021035286196 Functional Gain - NUF2 ENSG00000143228 CDS Human protein_coding chr1:163313614 chr1:163313614 nonsynonymous SNV 0.984 2 21 hm7G_associated_SNPs_41765 0 0 1 0 1 NUF2 chr1:163313523 3'AG 163313523 Downstream 92bp 38413 chr6 88769293 88769293 1 + C G LUSC 88769293 + 88769273 88769313 41 GCAACTATTAAATTCACAGTCTATACGAGCAGTGGTAAGTG GCAACTATTAAATTCACAGTGTATACGAGCAGTGGTAAGTG Direct Gain 0 0.921505616128099 NA NA prediction 0.843011232256198 Functional Gain - SPACA1 ENSG00000118434 CDS Human protein_coding chr6:88769293 chr6:88769293 synonymous SNV . 0 21 hm7G_associated_SNPs_41767 0 0 0 0 1 SPACA1 chr6:88769306 5'GT 88769306 Upstream 14bp 38414 chr19 4430557 4430557 1 + C G rs146690112 4430557 + 4430537 4430577 41 CCTTTTGAGGATGATGATGACGACATGGGAGAGGATGAAGA CCTTTTGAGGATGATGATGAGGACATGGGAGAGGATGAAGA Direct Gain 0 0.921486452045396 NA NA prediction 0.842972904090792 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4430557 chr19:4430557 nonsynonymous SNV 0.263 0 21 hm7G_associated_SNPs_41768 0 0 1 0 2 CHAF1A chr19:4430546 3'AG 4430546 Downstream 12bp 38415 chr19 4430557 4430557 1 + C G rs146690112 4430557 + 4430537 4430577 41 CCTTTTGAGGATGATGATGACGACATGGGAGAGGATGAAGA CCTTTTGAGGATGATGATGAGGACATGGGAGAGGATGAAGA Direct Gain 0 0.921486452045396 NA NA prediction 0.842972904090792 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4430557 chr19:4430557 nonsynonymous SNV 0.263 0 21 hm7G_associated_SNPs_41768 0 0 1 0 2 CHAF1A chr19:4430638 5'GT 4430638 Upstream 82bp 38416 chr14 73572975 73572975 1 + A G LIHC 73572975 + 73572955 73572995 41 AAAGAAGCTGAAAGAGAAGAAGAAAGAAGAAGAGAAATGGT AAAGAAGCTGAAAGAGAAGAGGAAAGAAGAAGAGAAATGGT Direct Gain 0 0.921411215117274 NA NA prediction 0.842822430234548 Functional Gain - RBM25 ENSG00000119707 CDS Human protein_coding chr14:73572975 chr14:73572975 synonymous SNV . 0 21 hm7G_associated_SNPs_41771 0 0 1 0 2 RBM25 chr14:73572904 3'AG 73572904 Downstream 72bp 38417 chr14 73572975 73572975 1 + A G LIHC 73572975 + 73572955 73572995 41 AAAGAAGCTGAAAGAGAAGAAGAAAGAAGAAGAGAAATGGT AAAGAAGCTGAAAGAGAAGAGGAAAGAAGAAGAGAAATGGT Direct Gain 0 0.921411215117274 NA NA prediction 0.842822430234548 Functional Gain - RBM25 ENSG00000119707 CDS Human protein_coding chr14:73572975 chr14:73572975 synonymous SNV . 0 21 hm7G_associated_SNPs_41771 0 0 1 0 2 RBM25 chr14:73572993 5'GT 73572993 Upstream 19bp 38418 chr10 94834568 94834568 1 + C G rs35355587 94834568 + 94834548 94834588 41 GCCTTCAGCCGCGAGGCACTCGAATGCTACGTGCCGGTGAT GCCTTCAGCCGCGAGGCACTGGAATGCTACGTGCCGGTGAT Direct Gain 0 0.92139409667185 NA NA prediction 0.842788193343699 Functional Gain - CYP26A1 ENSG00000095596 CDS Human protein_coding chr10:94834568 chr10:94834568 synonymous SNV . 0 21 hm7G_associated_SNPs_41772 0 0 0 0 1 CYP26A1 chr10:94834536 3'AG 94834536 Downstream 33bp 38419 chr12 57994848 57994848 1 + C G GBM 57994848 + 57994828 57994868 41 TTCATTGATGTCTATGCCATCCGGAGTGCTGAAGGTGAGAG TTCATTGATGTCTATGCCATGCGGAGTGCTGAAGGTGAGAG Direct Gain 0 0.921365555845277 NA NA prediction 0.842731111690554 Functional Gain - PIP4K2C ENSG00000166908 CDS Human protein_coding chr12:57994848 chr12:57994848 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41774 0 0 1 0 1 PIP4K2C chr12:57994861 5'GT 57994861 Upstream 14bp 38420 chr12 101876591 101876591 1 + T G UCEC 101876591 + 101876571 101876611 41 ACAGTGCTGCGGACTTCTATTTTGAAGGAAATATTCATCAA ACAGTGCTGCGGACTTCTATGTTGAAGGAAATATTCATCAA Direct Gain 0 0.921363898114298 NA NA prediction 0.842727796228596 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101876591 chr12:101876591 nonsynonymous SNV 0.913 0 21 hm7G_associated_SNPs_41775 0 0 0 0 2 SPIC chr12:101876570 3'AG 101876570 Downstream 22bp 38421 chr12 101876591 101876591 1 + T G UCEC 101876591 + 101876571 101876611 41 ACAGTGCTGCGGACTTCTATTTTGAAGGAAATATTCATCAA ACAGTGCTGCGGACTTCTATGTTGAAGGAAATATTCATCAA Direct Gain 0 0.921363898114298 NA NA prediction 0.842727796228596 Functional Gain - SPIC ENSG00000166211 CDS Human protein_coding chr12:101876591 chr12:101876591 nonsynonymous SNV 0.913 0 21 hm7G_associated_SNPs_41775 0 0 0 0 2 SPIC chr12:101876678 5'GT 101876678 Upstream 88bp 38422 chr14 20923812 20923812 1 + A G STAD 20923812 + 20923792 20923832 41 GTTCGTAACGGGAATGCCGAAGCGTGGGAAAAAGGGAGCGG GTTCGTAACGGGAATGCCGAGGCGTGGGAAAAAGGGAGCGG Direct Gain 0 0.921363893653263 NA NA prediction 0.842727787306527 Functional Gain - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20923812 chr14:20923812 nonsynonymous SNV 0.990 2 21 hm7G_associated_SNPs_41776 0 0 1 0 2 APEX1 chr14:20923737 3'AG 20923737 Downstream 76bp 38423 chr14 20923812 20923812 1 + A G STAD 20923812 + 20923792 20923832 41 GTTCGTAACGGGAATGCCGAAGCGTGGGAAAAAGGGAGCGG GTTCGTAACGGGAATGCCGAGGCGTGGGAAAAAGGGAGCGG Direct Gain 0 0.921363893653263 NA NA prediction 0.842727787306527 Functional Gain - APEX1 ENSG00000100823 CDS Human protein_coding chr14:20923812 chr14:20923812 nonsynonymous SNV 0.990 2 21 hm7G_associated_SNPs_41776 0 0 1 0 2 APEX1 chr14:20923862 5'GT 20923862 Upstream 51bp 38424 chr1 215759913 215759913 1 + A G UCEC 215759913 + 215759893 215759933 41 ACTATCGAACGAGTAGCTTTAAATGCAAAGGTGGTTGGAGG ACTATCGAACGAGTAGCTTTGAATGCAAAGGTGGTTGGAGG Direct Gain 0 0.921351036383341 NA NA prediction 0.842702072766682 Functional Gain - KCTD3 ENSG00000136636 CDS Human protein_coding chr1:215759913 chr1:215759913 synonymous SNV . 0 21 hm7G_associated_SNPs_41778 0 0 1 0 1 KCTD3 chr1:215759838 3'AG 215759838 Downstream 76bp 38425 chr17 40722180 40722180 1 + C G BLCA 40722180 + 40722160 40722200 41 GCGTGTGTCTTCAGCTGGATCGAGGAGCACTGTAAGCCTCA GCGTGTGTCTTCAGCTGGATGGAGGAGCACTGTAAGCCTCA Direct Gain 0 0.921344436465758 NA NA prediction 0.842688872931517 Functional Gain - MLX ENSG00000108788 CDS Human protein_coding chr17:40722180 chr17:40722180 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_41780 0 0 1 0 1 MLX chr17:40722201 5'GT 40722201 Upstream 22bp 38426 chr19 7742562 7742562 1 + T G STAD 7742562 + 7742542 7742582 41 TGAGAATATCACCTTGGCCTTCAAAAATCAGGACCATGCAA TGAGAATATCACCTTGGCCTGCAAAAATCAGGACCATGCAA Direct Gain 0 0.921316394537364 NA NA prediction 0.842632789074729 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742562 chr19:7742562 nonsynonymous SNV 0.952 1 21 hm7G_associated_SNPs_41782 0 0 0 0 2 MCEMP1 chr19:7742523 3'AG 7742523 Downstream 40bp 38427 chr19 7742562 7742562 1 + T G STAD 7742562 + 7742542 7742582 41 TGAGAATATCACCTTGGCCTTCAAAAATCAGGACCATGCAA TGAGAATATCACCTTGGCCTGCAAAAATCAGGACCATGCAA Direct Gain 0 0.921316394537364 NA NA prediction 0.842632789074729 Functional Gain - MCEMP1 ENSG00000183019 CDS Human protein_coding chr19:7742562 chr19:7742562 nonsynonymous SNV 0.952 1 21 hm7G_associated_SNPs_41782 0 0 0 0 2 MCEMP1 chr19:7742612 5'GT 7742612 Upstream 51bp 38428 chr6 7582922 7582922 1 + A G COAD 7582922 + 7582902 7582942 41 AATCAGTGTACTCAGGTGGTACAGGAAAGAGAGAGCCTTCT AATCAGTGTACTCAGGTGGTGCAGGAAAGAGAGAGCCTTCT Direct Gain 0 0.921304739976393 NA NA prediction 0.842609479952785 Functional Gain - DSP ENSG00000096696 CDS Human protein_coding chr6:7582922 chr6:7582922 synonymous SNV . 0 21 hm7G_associated_SNPs_41784 0 0 1 0 1 DSP chr6:7582875 3'AG 7582875 Downstream 48bp 38429 chr16 1837726 1837726 1 + A G STAD 1837726 + 1837706 1837746 41 GGCCTGGGGGGAGCTGGACTACCTGGTGGTGGACACGCCCC GGCCTGGGGGGAGCTGGACTGCCTGGTGGTGGACACGCCCC Direct Gain 0 0.921287428197999 NA NA prediction 0.842574856395999 Functional Gain - NUBP2 ENSG00000095906 CDS Human protein_coding chr16:1837726 chr16:1837726 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_41787 0 0 1 0 1 NUBP2 chr16:1837678 3'AG 1837678 Downstream 49bp 38430 chr11 111430916 111430916 1 + C G ESCA 111430916 + 111430896 111430936 41 GACCTAGAGGTCTACAATGTCATAAGAAAACAAAGCGAAGC GACCTAGAGGTCTACAATGTGATAAGAAAACAAAGCGAAGC Direct Gain 0 0.921272079653563 NA NA prediction 0.842544159307125 Functional Gain - LAYN ENSG00000204381 CDS Human protein_coding chr11:111430916 chr11:111430916 synonymous SNV . 0 21 hm7G_associated_SNPs_41788 0 0 0 1 1 LAYN chr11:111430820 3'AG 111430820 Downstream 97bp 38431 chr11 67052379 67052379 1 + C G BLCA 67052379 + 67052359 67052399 41 TCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCG TCCAAGATGGGCAACCCCTTGCTGACCCAGTGGCAGCGGCG Direct Gain 0 0.92126742400943 NA NA prediction 0.842534848018859 Functional Gain - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052379 chr11:67052379 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_41790 0 0 1 0 2 GRK2 chr11:67052318 3'AG 67052318 Downstream 62bp 38432 chr11 67052379 67052379 1 + C G BLCA 67052379 + 67052359 67052399 41 TCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCG TCCAAGATGGGCAACCCCTTGCTGACCCAGTGGCAGCGGCG Direct Gain 0 0.92126742400943 NA NA prediction 0.842534848018859 Functional Gain - GRK2 ENSG00000173020 CDS Human protein_coding chr11:67052379 chr11:67052379 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_41790 0 0 1 0 2 GRK2 chr11:67052454 5'GT 67052454 Upstream 76bp 38433 chr6 25682188 25682188 1 + T G OV 25682188 + 25682168 25682208 41 CTGCATTTCAGATGAAGATTTTTGACAGAAATAAAGATGGT CTGCATTTCAGATGAAGATTGTTGACAGAAATAAAGATGGT Direct Gain 0 0.921254129542002 NA NA prediction 0.842508259084004 Functional Gain - SCGN ENSG00000079689 CDS Human protein_coding chr6:25682188 chr6:25682188 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_41791 0 0 0 0 2 SCGN chr6:25682179 3'AG 25682179 Downstream 10bp 38434 chr6 25682188 25682188 1 + T G OV 25682188 + 25682168 25682208 41 CTGCATTTCAGATGAAGATTTTTGACAGAAATAAAGATGGT CTGCATTTCAGATGAAGATTGTTGACAGAAATAAAGATGGT Direct Gain 0 0.921254129542002 NA NA prediction 0.842508259084004 Functional Gain - SCGN ENSG00000079689 CDS Human protein_coding chr6:25682188 chr6:25682188 nonsynonymous SNV 0.988 4 21 hm7G_associated_SNPs_41791 0 0 0 0 2 SCGN chr6:25682234 5'GT 25682234 Upstream 47bp 38435 chr6 84798852 84798852 1 + T G SKCM 84798852 + 84798832 84798872 41 AGATTCAGAATGAACAGCTTTGTGTCAGACTTTGGAAGACC AGATTCAGAATGAACAGCTTGGTGTCAGACTTTGGAAGACC Direct Gain 0 0.921253656128158 NA NA prediction 0.842507312256316 Functional Gain - MRAP2 ENSG00000135324 CDS Human protein_coding chr6:84798852 chr6:84798852 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41792 0 0 0 0 1 MRAP2 chr6:84798810 3'AG 84798810 Downstream 43bp 38436 chr17 26554393 26554393 1 + A G UCEC 26554393 + 26554373 26554413 41 GCTTTTGGCCCTGCTCGTCTACCTGGGGGCGCTGGTCGACG GCTTTTGGCCCTGCTCGTCTGCCTGGGGGCGCTGGTCGACG Direct Gain 0 0.921240085381441 NA NA prediction 0.842480170762882 Functional Gain - PYY2 ENSG00000237575 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr17:26554393 chr17:26554393 . . 0 21 hm7G_associated_SNPs_41793 0 0 0 0 1 PYY2 chr17:26554332 3'AG 26554332 Downstream 62bp 38437 chr1 193045046 193045046 1 + T G STAD 193045046 + 193045026 193045066 41 TGTGGAGACTGAAAAATTATTAAAGTATCTGGAGGCTGTAG TGTGGAGACTGAAAAATTATGAAAGTATCTGGAGGCTGTAG Direct Gain 0 0.921229083697839 NA NA prediction 0.842458167395678 Functional Gain - TROVE2 ENSG00000116747 CDS Human protein_coding chr1:193045046 chr1:193045046 stopgain 0.985 1 21 hm7G_associated_SNPs_41795 0 0 1 0 1 TROVE2 chr1:193044950 3'AG 193044950 Downstream 97bp 38438 chr1 173456883 173456883 1 + A G GBM 173456883 + 173456863 173456903 41 TCTTTCAATAGGATGGGGATAGTGTGATGGTCCTTCCAACC TCTTTCAATAGGATGGGGATGGTGTGATGGTCCTTCCAACC Direct Gain 0 0.921226642758824 NA NA prediction 0.842453285517648 Functional Gain - PRDX6 ENSG00000117592 CDS Human protein_coding chr1:173456883 chr1:173456883 nonsynonymous SNV 0.871 2 21 hm7G_associated_SNPs_41796 0 0 1 0 1 PRDX6 chr1:173456874 3'AG 173456874 Downstream 10bp 38439 chr1 110230832 110230832 1 + C G BLCA 110230832 + 110230812 110230852 41 GCTCCTGGAATACACAGACTCAAGCTATGAGGAAAAGAAGT GCTCCTGGAATACACAGACTGAAGCTATGAGGAAAAGAAGT Direct Gain 0 0.921210260694499 NA NA prediction 0.842420521388997 Functional Gain - GSTM1 ENSG00000134184 CDS Human protein_coding chr1:110230832 chr1:110230832 stopgain 0.174 0 21 hm7G_associated_SNPs_41797 0 0 0 0 2 GSTM1 chr1:110230792 3'AG 110230792 Downstream 41bp 38440 chr1 110230832 110230832 1 + C G BLCA 110230832 + 110230812 110230852 41 GCTCCTGGAATACACAGACTCAAGCTATGAGGAAAAGAAGT GCTCCTGGAATACACAGACTGAAGCTATGAGGAAAAGAAGT Direct Gain 0 0.921210260694499 NA NA prediction 0.842420521388997 Functional Gain - GSTM1 ENSG00000134184 CDS Human protein_coding chr1:110230832 chr1:110230832 stopgain 0.174 0 21 hm7G_associated_SNPs_41797 0 0 0 0 2 GSTM1 chr1:110230867 5'GT 110230867 Upstream 36bp 38441 chr20 43943062 43943062 1 + A G BLCA 43943062 + 43943042 43943082 41 TTCCATTGCAGATCATCCGTAAAGTAGCAAAACAGTGTGCG TTCCATTGCAGATCATCCGTGAAGTAGCAAAACAGTGTGCG Direct Gain 0 0.921205312702664 NA NA prediction 0.842410625405328 Functional Gain - RBPJL ENSG00000124232 CDS Human protein_coding chr20:43943062 chr20:43943062 nonsynonymous SNV 0.989 4 21 hm7G_associated_SNPs_41798 0 0 0 0 1 RBPJL chr20:43943053 3'AG 43943053 Downstream 10bp 38442 chr12 100930764 100930764 1 + T G UCEC 100930764 + 100930744 100930784 41 GCAGAAGAAAATTTTCTCATTTTGACGGAAATGGCAACCAA GCAGAAGAAAATTTTCTCATGTTGACGGAAATGGCAACCAA Direct Gain 0 0.921195337965122 NA NA prediction 0.842390675930244 Functional Gain - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100930764 chr12:100930764 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_41799 0 0 0 0 2 NR1H4 chr12:100930726 3'AG 100930726 Downstream 39bp 38443 chr12 100930764 100930764 1 + T G UCEC 100930764 + 100930744 100930784 41 GCAGAAGAAAATTTTCTCATTTTGACGGAAATGGCAACCAA GCAGAAGAAAATTTTCTCATGTTGACGGAAATGGCAACCAA Direct Gain 0 0.921195337965122 NA NA prediction 0.842390675930244 Functional Gain - NR1H4 ENSG00000012504 CDS Human protein_coding chr12:100930764 chr12:100930764 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_41799 0 0 0 0 2 NR1H4 chr12:100930825 5'GT 100930825 Upstream 62bp 38444 chr5 137226194 137226194 1 + A G COAD 137226194 + 137226174 137226214 41 TTCGAAACATAAGTTGCATTACAGAAAGGAAGTAGAAATTA TTCGAAACATAAGTTGCATTGCAGAAAGGAAGTAGAAATTA Direct Gain 0 0.921180305586273 NA NA prediction 0.842360611172545 Functional Gain - PKD2L2 ENSG00000078795 CDS Human protein_coding chr5:137226194 chr5:137226194 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_41801 0 0 0 0 2 PKD2L2 chr5:137226170 3'AG 137226170 Downstream 25bp 38445 chr5 137226194 137226194 1 + A G COAD 137226194 + 137226174 137226214 41 TTCGAAACATAAGTTGCATTACAGAAAGGAAGTAGAAATTA TTCGAAACATAAGTTGCATTGCAGAAAGGAAGTAGAAATTA Direct Gain 0 0.921180305586273 NA NA prediction 0.842360611172545 Functional Gain - PKD2L2 ENSG00000078795 CDS Human protein_coding chr5:137226194 chr5:137226194 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_41801 0 0 0 0 2 PKD2L2 chr5:137226271 5'GT 137226271 Upstream 78bp 38446 chr17 35800639 35800639 1 + C G rs186965965 35800639 + 35800619 35800659 41 AATCAAATGTGCACCAAGACCAAGGAGGAGTGTGAGAAGCA AATCAAATGTGCACCAAGACGAAGGAGGAGTGTGAGAAGCA Direct Gain 0 0.921112135810941 NA NA prediction 0.842224271621882 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35800639 chr17:35800639 synonymous SNV . 0 21 hm7G_associated_SNPs_41805 0 0 1 0 1 TADA2A chr17:35800606 3'AG 35800606 Downstream 34bp 38447 chr10 101515429 101515429 1 + C G BLCA 101515429 + 101515409 101515449 41 ACTTTCTTGCTCAGAATATTCCCTAAAGGTAACAGATGTGA ACTTTCTTGCTCAGAATATTGCCTAAAGGTAACAGATGTGA Direct Gain 0 0.921093894761624 NA NA prediction 0.842187789523249 Functional Gain - CUTC ENSG00000119929 CDS Human protein_coding chr10:101515429 chr10:101515429 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41806 0 0 1 1 1 CUTC chr10:101515382 3'AG 101515382 Downstream 48bp 38448 chr10 15008554 15008554 1 + A G rs7079652 15008554 + 15008534 15008574 41 AATCTGTACAGATTTCAACAAGCAGGATATCGGGATGAAAC AATCTGTACAGATTTCAACAGGCAGGATATCGGGATGAAAC Direct Gain 0 0.921042468009739 NA NA prediction 0.842084936019478 Functional Gain - MEIG1 ENSG00000197889 CDS Human protein_coding chr10:15008554 chr10:15008554 synonymous SNV . 0 21 hm7G_associated_SNPs_41810 0 0 0 0 1 MEIG1 chr10:15008605 5'GT 15008605 Upstream 52bp 38449 chr7 39736294 39736294 1 + T G COAD 39736294 + 39736274 39736314 41 TCTTATCCAGGGAGCAGATTTTAAGAGTAAAAGAAGATGAG TCTTATCCAGGGAGCAGATTGTAAGAGTAAAAGAAGATGAG Direct Gain 0 0.921023046794704 NA NA prediction 0.842046093589408 Functional Gain - RALA ENSG00000006451 CDS Human protein_coding chr7:39736294 chr7:39736294 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41811 0 0 0 0 1 RALA chr7:39736284 3'AG 39736284 Downstream 11bp 38450 chr1 10464254 10464254 1 + T G SKCM 10464254 + 10464234 10464274 41 TCAAGGCCAAGGGAATTTTATTTGTGGGGAGCGGAGTCAGT TCAAGGCCAAGGGAATTTTAGTTGTGGGGAGCGGAGTCAGT Direct Gain 0 0.920985599931203 NA NA prediction 0.841971199862406 Functional Gain - PGD ENSG00000142657 CDS Human protein_coding chr1:10464254 chr1:10464254 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_41813 0 0 1 0 2 PGD chr1:10464218 3'AG 10464218 Downstream 37bp 38451 chr1 10464254 10464254 1 + T G SKCM 10464254 + 10464234 10464274 41 TCAAGGCCAAGGGAATTTTATTTGTGGGGAGCGGAGTCAGT TCAAGGCCAAGGGAATTTTAGTTGTGGGGAGCGGAGTCAGT Direct Gain 0 0.920985599931203 NA NA prediction 0.841971199862406 Functional Gain - PGD ENSG00000142657 CDS Human protein_coding chr1:10464254 chr1:10464254 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_41813 0 0 1 0 2 PGD chr1:10464336 5'GT 10464336 Upstream 83bp 38452 chr10 70412302 70412302 1 + A G UCEC 70412302 + 70412282 70412322 41 AAGGATAGAAATAGTAGTGTACACCGGTAAAGAAGGGAAAA AAGGATAGAAATAGTAGTGTGCACCGGTAAAGAAGGGAAAA Direct Gain 0 0.920958066975195 NA NA prediction 0.841916133950391 Functional Gain - TET1 ENSG00000138336 CDS Human protein_coding chr10:70412302 chr10:70412302 nonsynonymous SNV 0.748 4 21 hm7G_associated_SNPs_41814 0 0 1 0 2 TET1 chr10:70412258 3'AG 70412258 Downstream 45bp 38453 chr10 70412302 70412302 1 + A G UCEC 70412302 + 70412282 70412322 41 AAGGATAGAAATAGTAGTGTACACCGGTAAAGAAGGGAAAA AAGGATAGAAATAGTAGTGTGCACCGGTAAAGAAGGGAAAA Direct Gain 0 0.920958066975195 NA NA prediction 0.841916133950391 Functional Gain - TET1 ENSG00000138336 CDS Human protein_coding chr10:70412302 chr10:70412302 nonsynonymous SNV 0.748 4 21 hm7G_associated_SNPs_41814 0 0 1 0 2 TET1 chr10:70412351 5'GT 70412351 Upstream 50bp 38454 chr17 35836972 35836972 1 + A G LIHC 35836972 + 35836952 35836992 41 TGCTCTATTGAACGAATGTAACAAGCAAGGAGGCTTAAGAC TGCTCTATTGAACGAATGTAGCAAGCAAGGAGGCTTAAGAC Direct Gain 0 0.920934954642798 NA NA prediction 0.841869909285596 Functional Gain - TADA2A ENSG00000108264 CDS Human other chr17:35836972 chr17:35836972 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41816 0 0 1 0 1 TADA2A chr17:35836902 3'AG 35836902 Downstream 71bp 38455 chr2 128408376 128408376 1 + T G UCEC 128408376 + 128408356 128408396 41 CCCTGGCCACGGCAGAGCAATGTGGCCAGGAGACGCCACTG CCCTGGCCACGGCAGAGCAAGGTGGCCAGGAGACGCCACTG Direct Gain 0 0.920919903818377 NA NA prediction 0.841839807636754 Functional Gain - GPR17 ENSG00000144230 CDS Human protein_coding chr2:128408376 chr2:128408376 nonsynonymous SNV 0.954 2 21 hm7G_associated_SNPs_41818 0 0 0 0 1 GPR17 chr2:128408290 3'AG 128408290 Downstream 87bp 38456 chr6 35438059 35438059 1 + C G LUAD 35438059 + 35438039 35438079 41 GGAAAGTTCCCTTCCCTGCTCACACACAACGAAAACATGGT GGAAAGTTCCCTTCCCTGCTGACACACAACGAAAACATGGT Direct Gain 0 0.9209035950983 NA NA prediction 0.8418071901966 Functional Gain - RPL10A ENSG00000198755 CDS Human protein_coding chr6:35438059 chr6:35438059 synonymous SNV . 0 21 hm7G_associated_SNPs_41819 0 0 1 0 1 RPL10A chr6:35438128 5'GT 35438128 Upstream 70bp 38457 chr12 6837406 6837406 1 + C G BLCA 6837406 + 6837386 6837426 41 TAGCTGAAGCCCGGAATCTTCCTCCACTAACAGAGGCTCAG TAGCTGAAGCCCGGAATCTTGCTCCACTAACAGAGGCTCAG Direct Gain 0 0.920894625238125 NA NA prediction 0.841789250476251 Functional Gain - COPS7A ENSG00000111652 CDS Human protein_coding chr12:6837406 chr12:6837406 nonsynonymous SNV 0.709 3 21 hm7G_associated_SNPs_41820 0 0 1 0 2 COPS7A chr12:6837389 3'AG 6837389 Downstream 18bp 38458 chr12 6837406 6837406 1 + C G BLCA 6837406 + 6837386 6837426 41 TAGCTGAAGCCCGGAATCTTCCTCCACTAACAGAGGCTCAG TAGCTGAAGCCCGGAATCTTGCTCCACTAACAGAGGCTCAG Direct Gain 0 0.920894625238125 NA NA prediction 0.841789250476251 Functional Gain - COPS7A ENSG00000111652 CDS Human protein_coding chr12:6837406 chr12:6837406 nonsynonymous SNV 0.709 3 21 hm7G_associated_SNPs_41820 0 0 1 0 2 COPS7A chr12:6837477 5'GT 6837477 Upstream 72bp 38459 chr13 39613726 39613726 1 + T G UCEC 39613726 + 39613706 39613746 41 GGATAACATCCCAAAGATATTAGTGTTCACAGAGGATGGAT GGATAACATCCCAAAGATATGAGTGTTCACAGAGGATGGAT Direct Gain 0 0.920873022049564 NA NA prediction 0.841746044099128 Functional Gain - NHLRC3 ENSG00000188811 CDS Human protein_coding chr13:39613726 chr13:39613726 stopgain 1.000 1 21 hm7G_associated_SNPs_41821 0 0 1 0 1 NHLRC3 chr13:39613701 3'AG 39613701 Downstream 26bp 38460 chr8 109498777 109498777 1 + C G BRCA 109498777 + 109498757 109498797 41 AGAAGGAAACCAAATATTCTCTTAAGGCTGTCGAAGACATG AGAAGGAAACCAAATATTCTGTTAAGGCTGTCGAAGACATG Direct Gain 0 0.9208709029329 NA NA prediction 0.8417418058658 Functional Gain - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109498777 chr8:109498777 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41822 0 0 1 0 1 EMC2 chr8:109498741 3'AG 109498741 Downstream 37bp 38461 chr12 57628084 57628084 1 + C G CESC 57628084 + 57628064 57628104 41 AGTCAGCGTCTGGCCAACCTCAGGCAACGGGTGGAGCAGTT AGTCAGCGTCTGGCCAACCTGAGGCAACGGGTGGAGCAGTT Direct Gain 0 0.920857972305201 NA NA prediction 0.841715944610401 Functional Gain - SHMT2 ENSG00000182199 CDS Human protein_coding chr12:57628084 chr12:57628084 synonymous SNV . 0 21 hm7G_associated_SNPs_41823 0 0 1 0 1 SHMT2 chr12:57628017 3'AG 57628017 Downstream 68bp 38462 chr2 73899487 73899487 1 + A G LUSC 73899487 + 73899467 73899507 41 ACACACTCGAGCCAACTCCAAGTTCCAGCGAGGCTAAATTG ACACACTCGAGCCAACTCCAGGTTCCAGCGAGGCTAAATTG Direct Gain 0 0.920857006835394 NA NA prediction 0.841714013670789 Functional Gain - ALMS1P1 ENSG00000163016 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:73899487 chr2:73899487 . . 0 21 hm7G_associated_SNPs_41824 0 0 0 0 1 ALMS1P1 chr2:73899436 3'AG 73899436 Downstream 52bp 38463 chr17 65050180 65050180 1 + C G BLCA 65050180 + 65050160 65050200 41 AGATCTTCGAATTCACCACTCAGAAGGGTGAGCCTGGGTGG AGATCTTCGAATTCACCACTGAGAAGGGTGAGCCTGGGTGG Direct Gain 0 0.920828809954951 NA NA prediction 0.841657619909903 Functional Gain - CACNG1 ENSG00000108878 CDS Human protein_coding chr17:65050180 chr17:65050180 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_41828 0 0 0 0 1 CACNG1 chr17:65050112 3'AG 65050112 Downstream 69bp 38464 chr7 296640 296640 1 + A G UCEC 296640 + 296620 296660 41 GTGGGAGGTGGACCCTGACTACTGCGAGGAGGTGAAGCAGA GTGGGAGGTGGACCCTGACTGCTGCGAGGAGGTGAAGCAGA Direct Gain 0 0.92082590558259 NA NA prediction 0.84165181116518 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:296640 chr7:296640 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_41829 0 0 1 0 2 FAM20C chr7:296620 3'AG 296620 Downstream 21bp 38465 chr7 296640 296640 1 + A G UCEC 296640 + 296620 296660 41 GTGGGAGGTGGACCCTGACTACTGCGAGGAGGTGAAGCAGA GTGGGAGGTGGACCCTGACTGCTGCGAGGAGGTGAAGCAGA Direct Gain 0 0.92082590558259 NA NA prediction 0.84165181116518 Functional Gain - FAM20C ENSG00000177706 CDS Human protein_coding chr7:296640 chr7:296640 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_41829 0 0 1 0 2 FAM20C chr7:296729 5'GT 296729 Upstream 90bp 38466 chr5 33467675 33467675 1 + A G ESCA 33467675 + 33467655 33467695 41 TTTGTTTTAGTTGTTGGTGAAAAAGAGAAAATCAGTGGCAC TTTGTTTTAGTTGTTGGTGAGAAAGAGAAAATCAGTGGCAC Direct Gain 0 0.920811703492693 NA NA prediction 0.841623406985386 Functional Gain - TARS ENSG00000113407 CDS Human protein_coding chr5:33467675 chr5:33467675 synonymous SNV . 0 21 hm7G_associated_SNPs_41831 0 0 1 0 1 TARS chr5:33467665 3'AG 33467665 Downstream 11bp 38467 chr1 45232824 45232824 1 + A G SKCM 45232824 + 45232804 45232844 41 GAAGAGCAGGCTAGCAGACAAATAAGCAGCAAGAAACGGCC GAAGAGCAGGCTAGCAGACAGATAAGCAGCAAGAAACGGCC Direct Gain 0 0.920801795966064 NA NA prediction 0.841603591932127 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45232824 chr1:45232824 synonymous SNV . 0 21 hm7G_associated_SNPs_41833 0 0 0 0 1 KIF2C chr1:45232769 3'AG 45232769 Downstream 56bp 38468 chr1 24106358 24106358 1 + A G COAD 24106358 + 24106338 24106378 41 TTTTGCATTCTGGCAGATTTACGGGCAATGTCAAGCTCAAA TTTTGCATTCTGGCAGATTTGCGGGCAATGTCAAGCTCAAA Direct Gain 0 0.920796781422614 NA NA prediction 0.841593562845229 Functional Gain - PITHD1 ENSG00000057757 CDS Human protein_coding chr1:24106358 chr1:24106358 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41834 0 0 1 0 2 PITHD1 chr1:24106354 3'AG 24106354 Downstream 5bp 38469 chr1 24106358 24106358 1 + A G COAD 24106358 + 24106338 24106378 41 TTTTGCATTCTGGCAGATTTACGGGCAATGTCAAGCTCAAA TTTTGCATTCTGGCAGATTTGCGGGCAATGTCAAGCTCAAA Direct Gain 0 0.920796781422614 NA NA prediction 0.841593562845229 Functional Gain - PITHD1 ENSG00000057757 CDS Human protein_coding chr1:24106358 chr1:24106358 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41834 0 0 1 0 2 PITHD1 chr1:24106431 5'GT 24106431 Upstream 74bp 38470 chr17 72308264 72308264 1 + A G STAD 72308264 + 72308244 72308284 41 ACCGATGAGGAGCTGGCCGTAGACCTGGAGGCGCTGGTCAG ACCGATGAGGAGCTGGCCGTGGACCTGGAGGCGCTGGTCAG Direct Gain 0 0.920757937291167 NA NA prediction 0.841515874582334 Functional Gain - DNAI2 ENSG00000171595 CDS Human protein_coding chr17:72308264 chr17:72308264 synonymous SNV . 0 21 hm7G_associated_SNPs_41836 0 0 0 0 1 DNAI2 chr17:72308214 3'AG 72308214 Downstream 51bp 38471 chr7 7622975 7622975 1 + C G BLCA 7622975 + 7622955 7622995 41 ATTCGCCGAGCAATCCAAATCCTGAATGAAGGGGCATCTTC ATTCGCCGAGCAATCCAAATGCTGAATGAAGGGGCATCTTC Direct Gain 0 0.920740199033564 NA NA prediction 0.841480398067128 Functional Gain - MIOS ENSG00000164654 CDS Human protein_coding chr7:7622975 chr7:7622975 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41837 0 0 0 0 1 MIOS chr7:7623003 5'GT 7623003 Upstream 29bp 38472 chr6 31625065 31625065 1 + C G BLCA 31625065 + 31625045 31625085 41 ACTGAAGGGAGCACAGATCTCAGAACTGAAGGTTGGTTCTT ACTGAAGGGAGCACAGATCTGAGAACTGAAGGTTGGTTCTT Direct Gain 0 0.920738651361588 NA NA prediction 0.841477302723176 Functional Gain - APOM ENSG00000204444 CDS Human protein_coding chr6:31625065 chr6:31625065 synonymous SNV . 0 21 hm7G_associated_SNPs_41838 0 0 1 0 2 APOM chr6:31625002 3'AG 31625002 Downstream 64bp 38473 chr6 31625065 31625065 1 + C G BLCA 31625065 + 31625045 31625085 41 ACTGAAGGGAGCACAGATCTCAGAACTGAAGGTTGGTTCTT ACTGAAGGGAGCACAGATCTGAGAACTGAAGGTTGGTTCTT Direct Gain 0 0.920738651361588 NA NA prediction 0.841477302723176 Functional Gain - APOM ENSG00000204444 CDS Human protein_coding chr6:31625065 chr6:31625065 synonymous SNV . 0 21 hm7G_associated_SNPs_41838 0 0 1 0 2 APOM chr6:31625075 5'GT 31625075 Upstream 11bp 38474 chr7 65225483 65225483 1 + A G UCEC 65225483 + 65225463 65225503 41 AATAAATATAAGCTCAGTGTAAAGGGCAAGGCACAGCTTGG AATAAATATAAGCTCAGTGTGAAGGGCAAGGCACAGCTTGG Direct Gain 0 0.920731807937187 NA NA prediction 0.841463615874375 Functional Gain - CCT6P1 ENSG00000228409 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:65225483 chr7:65225483 . . 0 21 hm7G_associated_SNPs_41839 0 0 0 0 2 CCT6P1 chr7:65225411 3'AG 65225411 Downstream 73bp 38475 chr7 65225483 65225483 1 + A G UCEC 65225483 + 65225463 65225503 41 AATAAATATAAGCTCAGTGTAAAGGGCAAGGCACAGCTTGG AATAAATATAAGCTCAGTGTGAAGGGCAAGGCACAGCTTGG Direct Gain 0 0.920731807937187 NA NA prediction 0.841463615874375 Functional Gain - CCT6P1 ENSG00000228409 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr7:65225483 chr7:65225483 . . 0 21 hm7G_associated_SNPs_41839 0 0 0 0 2 CCT6P1 chr7:65225543 5'GT 65225543 Upstream 61bp 38476 chr3 8775658 8775658 1 + T G LUAD 8775658 + 8775638 8775678 41 AACCGAGACCCCAAGAACATTAACGAGGACATAGTCAAGGT AACCGAGACCCCAAGAACATGAACGAGGACATAGTCAAGGT Direct Gain 0 0.920679081552907 NA NA prediction 0.841358163105815 Functional Gain - CAV3 ENSG00000182533 CDS Human protein_coding chr3:8775658 chr3:8775658 nonsynonymous SNV 0.931 2 21 hm7G_associated_SNPs_41841 0 0 0 0 1 CAV3 chr3:8775676 5'GT 8775676 Upstream 19bp 38477 chr1 109756695 109756695 1 + C G CESC 109756695 + 109756675 109756715 41 GAGACGCAGGAGAAGCGCTTCAAGGACCCGGGACTAGTGGA GAGACGCAGGAGAAGCGCTTGAAGGACCCGGGACTAGTGGA Direct Gain 0 0.920572927046379 NA NA prediction 0.841145854092758 Functional Gain - SARS ENSG00000031698 CDS Human protein_coding chr1:109756695 chr1:109756695 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41847 0 0 1 0 1 SARS chr1:109756750 5'GT 109756750 Upstream 56bp 38478 chr17 1782952 1782952 1 + A G rs5030755 1782952 + 1782932 1782972 41 GGAATATCTACTTGATGGACACATCCGGGAAGGTGGTGACT GGAATATCTACTTGATGGACGCATCCGGGAAGGTGGTGACT Direct Gain 0 0.920572192132132 NA NA prediction 0.841144384264264 Functional Gain - RPA1 ENSG00000132383 CDS Human protein_coding chr17:1782952 chr17:1782952 nonsynonymous SNV 0.887 0 21 hm7G_associated_SNPs_41848 0 1 1 0 2 RPA1 chr17:1782854 3'AG 1782854 Downstream 99bp 38479 chr17 1782952 1782952 1 + A G rs5030755 1782952 + 1782932 1782972 41 GGAATATCTACTTGATGGACACATCCGGGAAGGTGGTGACT GGAATATCTACTTGATGGACGCATCCGGGAAGGTGGTGACT Direct Gain 0 0.920572192132132 NA NA prediction 0.841144384264264 Functional Gain - RPA1 ENSG00000132383 CDS Human protein_coding chr17:1782952 chr17:1782952 nonsynonymous SNV 0.887 0 21 hm7G_associated_SNPs_41848 0 1 1 0 2 RPA1 chr17:1782993 5'GT 1782993 Upstream 42bp 38480 chr2 8823008 8823008 1 + C G LUAD 8823008 + 8822988 8823028 41 TCTGAGTTAATGTCAAATGACAGCAAAGCACTGTGTGGCTG TCTGAGTTAATGTCAAATGAGAGCAAAGCACTGTGTGGCTG Direct Gain 0 0.920567246752797 NA NA prediction 0.841134493505593 Functional Gain - ID2 ENSG00000115738 CDS Human protein_coding chr2:8823008 chr2:8823008 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_41850 0 0 1 0 2 ID2 chr2:8822973 3'AG 8822973 Downstream 36bp 38481 chr2 8823008 8823008 1 + C G LUAD 8823008 + 8822988 8823028 41 TCTGAGTTAATGTCAAATGACAGCAAAGCACTGTGTGGCTG TCTGAGTTAATGTCAAATGAGAGCAAAGCACTGTGTGGCTG Direct Gain 0 0.920567246752797 NA NA prediction 0.841134493505593 Functional Gain - ID2 ENSG00000115738 CDS Human protein_coding chr2:8823008 chr2:8823008 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_41850 0 0 1 0 2 ID2 chr2:8823036 5'GT 8823036 Upstream 29bp 38482 chr7 56122148 56122148 1 + C G CESC 56122148 + 56122128 56122168 41 GATGGTACGACTTCTAATGTCCTAATCATTGGAGAGCTGCT GATGGTACGACTTCTAATGTGCTAATCATTGGAGAGCTGCT Direct Gain 0 0.920561073102719 NA NA prediction 0.841122146205437 Functional Gain - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56122148 chr7:56122148 synonymous SNV . 0 21 hm7G_associated_SNPs_41852 0 0 1 0 2 CCT6A chr7:56122062 3'AG 56122062 Downstream 87bp 38483 chr7 56122148 56122148 1 + C G CESC 56122148 + 56122128 56122168 41 GATGGTACGACTTCTAATGTCCTAATCATTGGAGAGCTGCT GATGGTACGACTTCTAATGTGCTAATCATTGGAGAGCTGCT Direct Gain 0 0.920561073102719 NA NA prediction 0.841122146205437 Functional Gain - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56122148 chr7:56122148 synonymous SNV . 0 21 hm7G_associated_SNPs_41852 0 0 1 0 2 CCT6A chr7:56122196 5'GT 56122196 Upstream 49bp 38484 chr16 2489821 2489821 1 + A G UCEC 2489821 + 2489801 2489841 41 GCTGCCAAAGGCTGCTGGGAAGCGCAGGTGAGGTGCGGGGC GCTGCCAAAGGCTGCTGGGAGGCGCAGGTGAGGTGCGGGGC Direct Gain 0 0.92055659517205 NA NA prediction 0.841113190344101 Functional Gain - CCNF ENSG00000162063 CDS Human protein_coding chr16:2489821 chr16:2489821 synonymous SNV . 0 21 hm7G_associated_SNPs_41854 0 0 1 0 2 CCNF chr16:2489750 3'AG 2489750 Downstream 72bp 38485 chr16 2489821 2489821 1 + A G UCEC 2489821 + 2489801 2489841 41 GCTGCCAAAGGCTGCTGGGAAGCGCAGGTGAGGTGCGGGGC GCTGCCAAAGGCTGCTGGGAGGCGCAGGTGAGGTGCGGGGC Direct Gain 0 0.92055659517205 NA NA prediction 0.841113190344101 Functional Gain - CCNF ENSG00000162063 CDS Human protein_coding chr16:2489821 chr16:2489821 synonymous SNV . 0 21 hm7G_associated_SNPs_41854 0 0 1 0 2 CCNF chr16:2489827 5'GT 2489827 Upstream 7bp 38486 chr17 38028566 38028566 1 + T G COAD 38028566 + 38028546 38028586 41 TATCAGATGGCTGTACGTTTTACCACAAGGTCTTGTATAGG TATCAGATGGCTGTACGTTTGACCACAAGGTCTTGTATAGG Direct Gain 0 0.920517502917003 NA NA prediction 0.841035005834005 Functional Gain - ZPBP2 ENSG00000186075 CDS Human protein_coding chr17:38028566 chr17:38028566 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_41857 0 0 0 0 1 ZPBP2 chr17:38028523 3'AG 38028523 Downstream 44bp 38487 chr12 113531851 113531851 1 + C G KIRC 113531851 + 113531831 113531871 41 GTGTCCCTGCAGGTAAGAATCCCGAGGATGTGGTTCGAAGA GTGTCCCTGCAGGTAAGAATGCCGAGGATGTGGTTCGAAGA Direct Gain 0 0.920506415079197 NA NA prediction 0.841012830158394 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113531851 chr12:113531851 nonsynonymous SNV 0.971 1 21 hm7G_associated_SNPs_41858 0 0 0 0 2 DTX1 chr12:113531843 3'AG 113531843 Downstream 9bp 38488 chr12 113531851 113531851 1 + C G KIRC 113531851 + 113531831 113531871 41 GTGTCCCTGCAGGTAAGAATCCCGAGGATGTGGTTCGAAGA GTGTCCCTGCAGGTAAGAATGCCGAGGATGTGGTTCGAAGA Direct Gain 0 0.920506415079197 NA NA prediction 0.841012830158394 Functional Gain - DTX1 ENSG00000135144 CDS Human protein_coding chr12:113531851 chr12:113531851 nonsynonymous SNV 0.971 1 21 hm7G_associated_SNPs_41858 0 0 0 0 2 DTX1 chr12:113531904 5'GT 113531904 Upstream 54bp 38489 chr16 55608623 55608623 1 + C G GBM 55608623 + 55608603 55608643 41 CCTTCCAACACAGAGGAGATCATCCAGGTGGCATTTAAGGT CCTTCCAACACAGAGGAGATGATCCAGGTGGCATTTAAGGT Direct Gain 0 0.920503974007555 NA NA prediction 0.841007948015111 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55608623 chr16:55608623 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41859 0 0 1 0 2 LPCAT2 chr16:55608543 3'AG 55608543 Downstream 81bp 38490 chr16 55608623 55608623 1 + C G GBM 55608623 + 55608603 55608643 41 CCTTCCAACACAGAGGAGATCATCCAGGTGGCATTTAAGGT CCTTCCAACACAGAGGAGATGATCCAGGTGGCATTTAAGGT Direct Gain 0 0.920503974007555 NA NA prediction 0.841007948015111 Functional Gain - LPCAT2 ENSG00000087253 CDS Human protein_coding chr16:55608623 chr16:55608623 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_41859 0 0 1 0 2 LPCAT2 chr16:55608641 5'GT 55608641 Upstream 19bp 38491 chr5 137780456 137780456 1 + A G UCEC 137780456 + 137780436 137780476 41 CCCATAGGAGATCGACGAGTACATCACGCAGGCCCGAGACA CCCATAGGAGATCGACGAGTGCATCACGCAGGCCCGAGACA Direct Gain 0 0.920477193672873 NA NA prediction 0.840954387345746 Functional Gain - REEP2 ENSG00000132563 CDS Human protein_coding chr5:137780456 chr5:137780456 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_41860 0 0 1 0 1 REEP2 chr5:137780443 3'AG 137780443 Downstream 14bp 38492 chr1 244852642 244852642 1 + T G UCEC 244852642 + 244852622 244852662 41 CTAGGAGAAACATTTAAATTTAAGTAAGTAGGGAGGATAAT CTAGGAGAAACATTTAAATTGAAGTAAGTAGGGAGGATAAT Direct Gain 0 0.920452449760005 NA NA prediction 0.84090489952001 Functional Gain - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244852642 chr1:244852642 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41861 0 0 1 0 2 DESI2 chr1:244852551 3'AG 244852551 Downstream 92bp 38493 chr1 244852642 244852642 1 + T G UCEC 244852642 + 244852622 244852662 41 CTAGGAGAAACATTTAAATTTAAGTAAGTAGGGAGGATAAT CTAGGAGAAACATTTAAATTGAAGTAAGTAGGGAGGATAAT Direct Gain 0 0.920452449760005 NA NA prediction 0.84090489952001 Functional Gain - DESI2 ENSG00000121644 CDS Human protein_coding chr1:244852642 chr1:244852642 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41861 0 0 1 0 2 DESI2 chr1:244852644 5'GT 244852644 Upstream 3bp 38494 chr22 21350158 21350158 1 + C G LUAD 21350158 + 21350138 21350178 41 GGCTATCCTGGCCGCCCGCTCCAGGTGGGTGGGGGCTGGAC GGCTATCCTGGCCGCCCGCTGCAGGTGGGTGGGGGCTGGAC Direct Gain 0 0.920442832597628 NA NA prediction 0.840885665195257 Functional Gain - LZTR1 ENSG00000099949 CDS Human protein_coding chr22:21350158 chr22:21350158 nonsynonymous SNV 0.947 4 21 hm7G_associated_SNPs_41862 0 0 0 0 1 LZTR1 chr22:21350161 5'GT 21350161 Upstream 4bp 38495 chr10 28906590 28906590 1 + C G CESC 28906590 + 28906570 28906610 41 ATTTCTTTAATTACAGGCATCAAGATTACGCGAAGAAGCGC ATTTCTTTAATTACAGGCATGAAGATTACGCGAAGAAGCGC Direct Gain 0 0.920433636533095 NA NA prediction 0.840867273066189 Functional Gain - WAC ENSG00000095787 CDS Human protein_coding chr10:28906590 chr10:28906590 stopgain 1.000 1 21 hm7G_associated_SNPs_41863 0 0 1 0 1 WAC chr10:28906586 3'AG 28906586 Downstream 5bp 38496 chr17 78055422 78055422 1 + A G STAD 78055422 + 78055402 78055442 41 CATCATGAAGGAGGAAGAAAAGAACGAGAAGCTGGCGAGCA CATCATGAAGGAGGAAGAAAGGAACGAGAAGCTGGCGAGCA Direct Gain 0 0.920432830692664 NA NA prediction 0.840865661385329 Functional Gain - CCDC40 ENSG00000141519 CDS Human protein_coding chr17:78055422 chr17:78055422 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41864 0 0 0 0 1 CCDC40 chr17:78055345 3'AG 78055345 Downstream 78bp 38497 chr11 59558006 59558006 1 + A G LIHC 59558006 + 59557986 59558026 41 CTTTAGGCATGGAGAAGCATATTGAAGAAGATGAGGTCAGG CTTTAGGCATGGAGAAGCATGTTGAAGAAGATGAGGTCAGG Direct Gain 0 0.920429439045486 NA NA prediction 0.840858878090973 Functional Gain - STX3 ENSG00000166900 CDS Human protein_coding chr11:59558006 chr11:59558006 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_41865 0 0 1 0 2 STX3 chr11:59557992 3'AG 59557992 Downstream 15bp 38498 chr11 59558006 59558006 1 + A G LIHC 59558006 + 59557986 59558026 41 CTTTAGGCATGGAGAAGCATATTGAAGAAGATGAGGTCAGG CTTTAGGCATGGAGAAGCATGTTGAAGAAGATGAGGTCAGG Direct Gain 0 0.920429439045486 NA NA prediction 0.840858878090973 Functional Gain - STX3 ENSG00000166900 CDS Human protein_coding chr11:59558006 chr11:59558006 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_41865 0 0 1 0 2 STX3 chr11:59558059 5'GT 59558059 Upstream 54bp 38499 chr8 109498794 109498794 1 + C G KIRP 109498794 + 109498774 109498814 41 TCTCTTAAGGCTGTCGAAGACATGTTGGAAACATTGCAGAT TCTCTTAAGGCTGTCGAAGAGATGTTGGAAACATTGCAGAT Direct Gain 0 0.920427718408364 NA NA prediction 0.840855436816728 Functional Gain - EMC2 ENSG00000104412 CDS Human protein_coding chr8:109498794 chr8:109498794 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41866 0 0 1 0 1 EMC2 chr8:109498741 3'AG 109498741 Downstream 54bp 38500 chr9 35801115 35801115 1 + T G LUSC 35801115 + 35801095 35801135 41 TCTGGGCACAGGAATCACCTTCATCATGTTTGGTGTTTCCA TCTGGGCACAGGAATCACCTGCATCATGTTTGGTGTTTCCA Direct Gain 0 0.92042605419775 NA NA prediction 0.8408521083955 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35801115 chr9:35801115 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41867 0 0 0 0 2 NPR2 chr9:35801067 3'AG 35801067 Downstream 49bp 38501 chr9 35801115 35801115 1 + T G LUSC 35801115 + 35801095 35801135 41 TCTGGGCACAGGAATCACCTTCATCATGTTTGGTGTTTCCA TCTGGGCACAGGAATCACCTGCATCATGTTTGGTGTTTCCA Direct Gain 0 0.92042605419775 NA NA prediction 0.8408521083955 Functional Gain - NPR2 ENSG00000159899 CDS Human protein_coding chr9:35801115 chr9:35801115 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41867 0 0 0 0 2 NPR2 chr9:35801151 5'GT 35801151 Upstream 37bp 38502 chr19 35512627 35512627 1 + C G ESCA 35512627 + 35512607 35512647 41 CCAAGGCTGAGAAGCTGTCTCTGGAGGAAGGCGGGAAGGAT CCAAGGCTGAGAAGCTGTCTGTGGAGGAAGGCGGGAAGGAT Direct Gain 0 0.920411388434132 NA NA prediction 0.840822776868264 Functional Gain - GRAMD1A ENSG00000089351 CDS Human protein_coding chr19:35512627 chr19:35512627 nonsynonymous SNV 0.950 1 21 hm7G_associated_SNPs_41870 0 0 1 0 1 GRAMD1A chr19:35512595 3'AG 35512595 Downstream 33bp 38503 chr3 169550788 169550788 1 + A G COAD 169550788 + 169550768 169550808 41 TTTTCAGCTTTGAAAGAATTACGGCTGGAGGACAACTTGCT TTTTCAGCTTTGAAAGAATTGCGGCTGGAGGACAACTTGCT Direct Gain 0 0.920393028925452 NA NA prediction 0.840786057850905 Functional Gain - LRRIQ4 ENSG00000188306 CDS Human protein_coding chr3:169550788 chr3:169550788 synonymous SNV . 0 21 hm7G_associated_SNPs_41871 0 0 0 0 1 LRRIQ4 chr3:169550775 3'AG 169550775 Downstream 14bp 38504 chr12 8289484 8289484 1 + A G BLCA 8289484 + 8289464 8289504 41 ATGGGTTGATCAGACACCATACAATGAAAGTTCCACGTGAG ATGGGTTGATCAGACACCATGCAATGAAAGTTCCACGTGAG Direct Gain 0 0.920387636902815 NA NA prediction 0.84077527380563 Functional Gain - CLEC4A ENSG00000111729 CDS Human protein_coding chr12:8289484 chr12:8289484 nonsynonymous SNV 0.552 3 21 hm7G_associated_SNPs_41872 0 0 1 0 1 CLEC4A chr12:8289499 5'GT 8289499 Upstream 16bp 38505 chr2 223795482 223795482 1 + A G COAD 223795482 + 223795462 223795502 41 ATGGACAAAGGTGGCTCTGTACTGGGGATATTGGAGAGTTT ATGGACAAAGGTGGCTCTGTGCTGGGGATATTGGAGAGTTT Direct Gain 0 0.920368648928244 NA NA prediction 0.840737297856487 Functional Gain - ACSL3 ENSG00000123983 CDS Human protein_coding chr2:223795482 chr2:223795482 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_41873 0 0 1 0 1 ACSL3 chr2:223795530 5'GT 223795530 Upstream 49bp 38506 chr4 69342019 69342019 1 + C G rs376619645 69342019 + 69341999 69342039 41 AAAACTCTAGGTCAGAGTCTCAGGATCGTTGGTGGGACAGA AAAACTCTAGGTCAGAGTCTGAGGATCGTTGGTGGGACAGA Direct Gain 0 0.920343189337109 NA NA prediction 0.840686378674217 Functional Gain - TMPRSS11E ENSG00000087128 CDS Human protein_coding chr4:69342019 chr4:69342019 synonymous SNV . 0 21 hm7G_associated_SNPs_41874 0 0 0 0 1 TMPRSS11E chr4:69341979 3'AG 69341979 Downstream 41bp 38507 chr3 49452277 49452277 1 + C G BLCA 49452277 + 49452257 49452297 41 ATGGCAGCAAACGAACCTCTCAAAACCCACAGAGAATAAGG ATGGCAGCAAACGAACCTCTGAAAACCCACAGAGAATAAGG Direct Gain 0 0.920338272729846 NA NA prediction 0.840676545459692 Functional Gain - TCTA ENSG00000145022 CDS Human protein_coding chr3:49452277 chr3:49452277 synonymous SNV . 0 21 hm7G_associated_SNPs_41875 0 0 1 0 1 TCTA chr3:49452253 3'AG 49452253 Downstream 25bp 38508 chr3 167512603 167512603 1 + A G LUSC 167512603 + 167512583 167512623 41 GAAGCAAAAAGTAGAAGTATACCTGCCCAGGTATGAGGTTC GAAGCAAAAAGTAGAAGTATGCCTGCCCAGGTATGAGGTTC Direct Gain 0 0.920337796555256 NA NA prediction 0.840675593110513 Functional Gain - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167512603 chr3:167512603 nonsynonymous SNV 0.987 4 21 hm7G_associated_SNPs_41876 0 0 1 0 1 SERPINI1 chr3:167512612 5'GT 167512612 Upstream 10bp 38509 chr6 7405582 7405582 1 + C G BRCA 7405582 + 7405562 7405602 41 GAGAACATGGATGCTTATCTCTCAAAGGTAAGATGGGGAGA GAGAACATGGATGCTTATCTGTCAAAGGTAAGATGGGGAGA Direct Gain 0 0.920335805118591 NA NA prediction 0.840671610237182 Functional Gain - RIOK1 ENSG00000124784 CDS Human protein_coding chr6:7405582 chr6:7405582 synonymous SNV . 0 21 hm7G_associated_SNPs_41877 0 0 1 0 1 RIOK1 chr6:7405588 5'GT 7405588 Upstream 7bp 38510 chr1 117629135 117629135 1 + C G BLCA 117629135 + 117629115 117629155 41 GAGATCCCAGGTGCAAACCTCAATGTGGAGGTGAGGCTGGG GAGATCCCAGGTGCAAACCTGAATGTGGAGGTGAGGCTGGG Direct Gain 0 0.920332215320122 NA NA prediction 0.840664430640244 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117629135 chr1:117629135 synonymous SNV . 0 21 hm7G_associated_SNPs_41878 0 0 1 0 2 TTF2 chr1:117629039 3'AG 117629039 Downstream 97bp 38511 chr1 117629135 117629135 1 + C G BLCA 117629135 + 117629115 117629155 41 GAGATCCCAGGTGCAAACCTCAATGTGGAGGTGAGGCTGGG GAGATCCCAGGTGCAAACCTGAATGTGGAGGTGAGGCTGGG Direct Gain 0 0.920332215320122 NA NA prediction 0.840664430640244 Functional Gain - TTF2 ENSG00000116830 CDS Human protein_coding chr1:117629135 chr1:117629135 synonymous SNV . 0 21 hm7G_associated_SNPs_41878 0 0 1 0 2 TTF2 chr1:117629144 5'GT 117629144 Upstream 10bp 38512 chr1 155698844 155698844 1 + A G LUSC 155698844 + 155698824 155698864 41 TGCTTTTAGATAAAAGTTCAAGAGAAGTATGTCTGGAATAA TGCTTTTAGATAAAAGTTCAGGAGAAGTATGTCTGGAATAA Direct Gain 0 0.920326519043804 NA NA prediction 0.840653038087608 Functional Gain - DAP3 ENSG00000132676 CDS Human protein_coding chr1:155698844 chr1:155698844 synonymous SNV . 0 21 hm7G_associated_SNPs_41879 0 0 1 0 2 DAP3 chr1:155698833 3'AG 155698833 Downstream 12bp 38513 chr1 155698844 155698844 1 + A G LUSC 155698844 + 155698824 155698864 41 TGCTTTTAGATAAAAGTTCAAGAGAAGTATGTCTGGAATAA TGCTTTTAGATAAAAGTTCAGGAGAAGTATGTCTGGAATAA Direct Gain 0 0.920326519043804 NA NA prediction 0.840653038087608 Functional Gain - DAP3 ENSG00000132676 CDS Human protein_coding chr1:155698844 chr1:155698844 synonymous SNV . 0 21 hm7G_associated_SNPs_41879 0 0 1 0 2 DAP3 chr1:155698913 5'GT 155698913 Upstream 70bp 38514 chr14 52187055 52187055 1 + C G BLCA 52187055 + 52187035 52187075 41 TCATGGCAGCTCCCACACCTCAGGGGTGGAGAGTGGCGGCA TCATGGCAGCTCCCACACCTGAGGGGTGGAGAGTGGCGGCA Direct Gain 0 0.920299603874289 NA NA prediction 0.840599207748578 Functional Gain - FRMD6 ENSG00000139926 CDS Human protein_coding chr14:52187055 chr14:52187055 stopgain 0.865 1 21 hm7G_associated_SNPs_41883 0 0 0 0 1 FRMD6 chr14:52187108 5'GT 52187108 Upstream 54bp 38515 chr1 92554330 92554330 1 + C G SARC 92554330 + 92554310 92554350 41 TTCAAAGCACACAAAGCAGTCCTTTTAGCAAGAGTTCCTGA TTCAAAGCACACAAAGCAGTGCTTTTAGCAAGAGTTCCTGA Direct Gain 0 0.920227882400716 NA NA prediction 0.840455764801432 Functional Gain - BTBD8 ENSG00000189195 CDS Human protein_coding chr1:92554330 chr1:92554330 synonymous SNV . 0 21 hm7G_associated_SNPs_41890 0 0 0 1 1 BTBD8 chr1:92554255 3'AG 92554255 Downstream 76bp 38516 chr1 109241358 109241358 1 + C G LUSC 109241358 + 109241338 109241378 41 CAGTTCAAAAGAATATTGATCAACAGATTAAAACCCGACCT CAGTTCAAAAGAATATTGATGAACAGATTAAAACCCGACCT Direct Gain 0 0.92020434461645 NA NA prediction 0.8404086892329 Functional Gain - PRPF38B ENSG00000134186 CDS Human protein_coding chr1:109241358 chr1:109241358 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41893 0 0 1 0 1 PRPF38B chr1:109241449 5'GT 109241449 Upstream 92bp 38517 chr5 96082069 96082069 1 + A G BLCA 96082069 + 96082049 96082089 41 AAAGCTAAAGAAGAAAAACTAGAGAAGTGTGGTGAGGATGA AAAGCTAAAGAAGAAAAACTGGAGAAGTGTGGTGAGGATGA Direct Gain 0 0.920185303512235 NA NA prediction 0.84037060702447 Functional Gain - CAST ENSG00000153113 CDS Human protein_coding chr5:96082069 chr5:96082069 synonymous SNV . 0 21 hm7G_associated_SNPs_41895 0 0 1 1 2 CAST chr5:96082046 3'AG 96082046 Downstream 24bp 38518 chr5 96082069 96082069 1 + A G BLCA 96082069 + 96082049 96082089 41 AAAGCTAAAGAAGAAAAACTAGAGAAGTGTGGTGAGGATGA AAAGCTAAAGAAGAAAAACTGGAGAAGTGTGGTGAGGATGA Direct Gain 0 0.920185303512235 NA NA prediction 0.84037060702447 Functional Gain - CAST ENSG00000153113 CDS Human protein_coding chr5:96082069 chr5:96082069 synonymous SNV . 0 21 hm7G_associated_SNPs_41895 0 0 1 1 2 CAST chr5:96082129 5'GT 96082129 Upstream 61bp 38519 chr17 26861480 26861480 1 + C G LUSC 26861480 + 26861460 26861500 41 GCCCTCAATCCGGCCAAGATCGACAAGATGCAAGAGGAGCT GCCCTCAATCCGGCCAAGATGGACAAGATGCAAGAGGAGCT Direct Gain 0 0.920178204754456 NA NA prediction 0.840356409508913 Functional Gain - FOXN1 ENSG00000109101 CDS Human protein_coding chr17:26861480 chr17:26861480 nonsynonymous SNV 0.853 4 21 hm7G_associated_SNPs_41896 0 0 0 0 1 FOXN1 chr17:26861556 5'GT 26861556 Upstream 77bp 38520 chr12 69986819 69986819 1 + A G MESO 69986819 + 69986799 69986839 41 CAGAAATAGAACATGCGGAAAAGGAAAAAATGAAGGAGAAA CAGAAATAGAACATGCGGAAGAGGAAAAAATGAAGGAGAAA Direct Gain 0 0.920152728418988 NA NA prediction 0.840305456837976 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69986819 chr12:69986819 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41899 0 0 1 1 2 CCT2 chr12:69986756 3'AG 69986756 Downstream 64bp 38521 chr12 69986819 69986819 1 + A G MESO 69986819 + 69986799 69986839 41 CAGAAATAGAACATGCGGAAAAGGAAAAAATGAAGGAGAAA CAGAAATAGAACATGCGGAAGAGGAAAAAATGAAGGAGAAA Direct Gain 0 0.920152728418988 NA NA prediction 0.840305456837976 Functional Gain - CCT2 ENSG00000166226 CDS Human protein_coding chr12:69986819 chr12:69986819 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41899 0 0 1 1 2 CCT2 chr12:69986883 5'GT 69986883 Upstream 65bp 38522 chr15 81426729 81426729 1 + A G UCEC 81426729 + 81426709 81426749 41 CAACTGGAATGAGGATGTCTACCTGGAGGAGGTACGCAGGG CAACTGGAATGAGGATGTCTGCCTGGAGGAGGTACGCAGGG Direct Gain 0 0.920127624493164 NA NA prediction 0.840255248986327 Functional Gain - CFAP161 ENSG00000156206 CDS Human protein_coding chr15:81426729 chr15:81426729 nonsynonymous SNV 0.981 2 21 hm7G_associated_SNPs_41901 0 0 0 0 1 CFAP161 chr15:81426739 5'GT 81426739 Upstream 11bp 38523 chr10 105765745 105765745 1 + A G rs805662 105765745 + 105765725 105765765 41 CAACAGCTCAATAGCAAACTACAGCAACAACGAGAACAAAT CAACAGCTCAATAGCAAACTGCAGCAACAACGAGAACAAAT Direct Gain 0 0.920105909123119 NA NA prediction 0.840211818246239 Functional Gain - SLK ENSG00000065613 CDS Human protein_coding chr10:105765745 chr10:105765745 synonymous SNV . 0 21 hm7G_associated_SNPs_41903 0 0 1 0 2 SLK chr10:105765670 3'AG 105765670 Downstream 76bp 38524 chr10 105765745 105765745 1 + A G rs805662 105765745 + 105765725 105765765 41 CAACAGCTCAATAGCAAACTACAGCAACAACGAGAACAAAT CAACAGCTCAATAGCAAACTGCAGCAACAACGAGAACAAAT Direct Gain 0 0.920105909123119 NA NA prediction 0.840211818246239 Functional Gain - SLK ENSG00000065613 CDS Human protein_coding chr10:105765745 chr10:105765745 synonymous SNV . 0 21 hm7G_associated_SNPs_41903 0 0 1 0 2 SLK chr10:105765793 5'GT 105765793 Upstream 49bp 38525 chr7 49951728 49951728 1 + T G LUAD 49951728 + 49951708 49951748 41 GTACTTATGAGGAAGGCACATGGAGAATCGAGCGGCAGGCC GTACTTATGAGGAAGGCACAGGGAGAATCGAGCGGCAGGCC Direct Gain 0 0.920092515547072 NA NA prediction 0.840185031094143 Functional Gain - VWC2 ENSG00000188730 CDS Human protein_coding chr7:49951728 chr7:49951728 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_41906 0 0 0 0 1 VWC2 chr7:49951630 3'AG 49951630 Downstream 99bp 38526 chrX 118604462 118604462 1 + C G CESC 118604462 + 118604442 118604482 41 CCGCCGCATGATGATGCAGTCAGGGCGCAAAGGAAGTAAGT CCGCCGCATGATGATGCAGTGAGGGCGCAAAGGAAGTAAGT Direct Gain 0 0.920089589136843 NA NA prediction 0.840179178273686 Functional Gain - SLC25A5 ENSG00000005022 CDS Human protein_coding chrX:118604462 chrX:118604462 stopgain 0.977 1 21 hm7G_associated_SNPs_41907 0 0 1 0 1 SLC25A5 chrX:118604476 5'GT 118604476 Upstream 15bp 38527 chr11 837482 837482 1 + A G STAD 837482 + 837462 837502 41 CCACTGCTGTGGCAGCAACAACTCACAGGACTGGCGAGACA CCACTGCTGTGGCAGCAACAGCTCACAGGACTGGCGAGACA Direct Gain 0 0.920058999380923 NA NA prediction 0.840117998761847 Functional Gain - CD151 ENSG00000177697 CDS Human protein_coding chr11:837482 chr11:837482 nonsynonymous SNV 0.995 1 21 hm7G_associated_SNPs_41908 0 0 1 0 1 CD151 chr11:837460 3'AG 837460 Downstream 23bp 38528 chr16 71406084 71406084 1 + A G rs144800285 71406084 + 71406064 71406104 41 TATATTGAAGGTAAAGAGCTAGAAAACTTTTTCCAAGAGCT TATATTGAAGGTAAAGAGCTGGAAAACTTTTTCCAAGAGCT Direct Gain 0 0.920051041469106 NA NA prediction 0.840102082938212 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71406084 chr16:71406084 synonymous SNV . 0 21 hm7G_associated_SNPs_41909 0 0 0 0 2 CALB2 chr16:71406056 3'AG 71406056 Downstream 29bp 38529 chr16 71406084 71406084 1 + A G rs144800285 71406084 + 71406064 71406104 41 TATATTGAAGGTAAAGAGCTAGAAAACTTTTTCCAAGAGCT TATATTGAAGGTAAAGAGCTGGAAAACTTTTTCCAAGAGCT Direct Gain 0 0.920051041469106 NA NA prediction 0.840102082938212 Functional Gain - CALB2 ENSG00000172137 CDS Human protein_coding chr16:71406084 chr16:71406084 synonymous SNV . 0 21 hm7G_associated_SNPs_41909 0 0 0 0 2 CALB2 chr16:71406132 5'GT 71406132 Upstream 49bp 38530 chr10 124920011 124920011 1 + A G COAD 124920011 + 124919991 124920031 41 GGACTTACGGAACATGGGTTACGTGCAGCAGCGCAGGGAGT GGACTTACGGAACATGGGTTGCGTGCAGCAGCGCAGGGAGT Direct Gain 0 0.920034757673748 NA NA prediction 0.840069515347495 Functional Gain - BUB3 ENSG00000154473 CDS Human protein_coding chr10:124920011 chr10:124920011 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_41912 0 0 1 0 2 BUB3 chr10:124919923 3'AG 124919923 Downstream 89bp 38531 chr10 124920011 124920011 1 + A G COAD 124920011 + 124919991 124920031 41 GGACTTACGGAACATGGGTTACGTGCAGCAGCGCAGGGAGT GGACTTACGGAACATGGGTTGCGTGCAGCAGCGCAGGGAGT Direct Gain 0 0.920034757673748 NA NA prediction 0.840069515347495 Functional Gain - BUB3 ENSG00000154473 CDS Human protein_coding chr10:124920011 chr10:124920011 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_41912 0 0 1 0 2 BUB3 chr10:124920081 5'GT 124920081 Upstream 71bp 38532 chr8 24256455 24256455 1 + A G LIHC 24256455 + 24256435 24256475 41 TGGTCTGATGGGGATAAGATAAAGGTGGTGCCCAGCGCAAG TGGTCTGATGGGGATAAGATGAAGGTGGTGCCCAGCGCAAG Direct Gain 0 0.920032200470849 NA NA prediction 0.840064400941698 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256455 chr8:24256455 nonsynonymous SNV 0.631 4 21 hm7G_associated_SNPs_41913 0 0 0 0 2 ADAMDEC1 chr8:24256387 3'AG 24256387 Downstream 69bp 38533 chr8 24256455 24256455 1 + A G LIHC 24256455 + 24256435 24256475 41 TGGTCTGATGGGGATAAGATAAAGGTGGTGCCCAGCGCAAG TGGTCTGATGGGGATAAGATGAAGGTGGTGCCCAGCGCAAG Direct Gain 0 0.920032200470849 NA NA prediction 0.840064400941698 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24256455 chr8:24256455 nonsynonymous SNV 0.631 4 21 hm7G_associated_SNPs_41913 0 0 0 0 2 ADAMDEC1 chr8:24256553 5'GT 24256553 Upstream 99bp 38534 chr1 112002163 112002163 1 + C G UCEC 112002163 + 112002143 112002183 41 TAAAGAATCGCCTGGACTATCATATATCTGTGCAGAACATG TAAAGAATCGCCTGGACTATGATATATCTGTGCAGAACATG Direct Gain 0 0.919994663529432 NA NA prediction 0.839989327058864 Functional Gain - ATP5F1 ENSG00000116459 CDS Human protein_coding chr1:112002163 chr1:112002163 nonsynonymous SNV 0.964 2 21 hm7G_associated_SNPs_41917 0 0 1 2 1 ATP5F1 chr1:112002079 3'AG 112002079 Downstream 85bp 38535 chr15 73852096 73852096 1 + C G LUSC 73852096 + 73852076 73852116 41 TTCTGGTATCCCTGCAGACTCTTCTGGCATCGGAGGAGCTG TTCTGGTATCCCTGCAGACTGTTCTGGCATCGGAGGAGCTG Direct Gain 0 0.919985274038045 NA NA prediction 0.83997054807609 Functional Gain - REC114 ENSG00000183324 CDS Human protein_coding chr15:73852096 chr15:73852096 nonsynonymous SNV 0.119 0 21 hm7G_associated_SNPs_41919 0 0 0 0 1 REC114 chr15:73852093 3'AG 73852093 Downstream 4bp 38536 chr4 109576775 109576775 1 + A G UCEC 109576775 + 109576755 109576795 41 GTCGGTTCTATGACTGATGAACATGGGCATCAGAGGCCAGT GTCGGTTCTATGACTGATGAGCATGGGCATCAGAGGCCAGT Direct Gain 0 0.919965847488736 NA NA prediction 0.839931694977472 Functional Gain - OSTC ENSG00000198856 CDS Human protein_coding chr4:109576775 chr4:109576775 synonymous SNV . 0 21 hm7G_associated_SNPs_41920 0 0 1 0 2 OSTC chr4:109576720 3'AG 109576720 Downstream 56bp 38537 chr4 109576775 109576775 1 + A G UCEC 109576775 + 109576755 109576795 41 GTCGGTTCTATGACTGATGAACATGGGCATCAGAGGCCAGT GTCGGTTCTATGACTGATGAGCATGGGCATCAGAGGCCAGT Direct Gain 0 0.919965847488736 NA NA prediction 0.839931694977472 Functional Gain - OSTC ENSG00000198856 CDS Human protein_coding chr4:109576775 chr4:109576775 synonymous SNV . 0 21 hm7G_associated_SNPs_41920 0 0 1 0 2 OSTC chr4:109576813 5'GT 109576813 Upstream 39bp 38538 chr8 67049375 67049375 1 + C G LUSC 67049375 + 67049355 67049395 41 TCCTCGTGGGCAGCAACGATCGAGTCCAGGGAGTGATCAGC TCCTCGTGGGCAGCAACGATGGAGTCCAGGGAGTGATCAGC Direct Gain 0 0.919940134589685 NA NA prediction 0.839880269179371 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67049375 chr8:67049375 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41921 0 0 0 0 2 TRIM55 chr8:67049330 3'AG 67049330 Downstream 46bp 38539 chr8 67049375 67049375 1 + C G LUSC 67049375 + 67049355 67049395 41 TCCTCGTGGGCAGCAACGATCGAGTCCAGGGAGTGATCAGC TCCTCGTGGGCAGCAACGATGGAGTCCAGGGAGTGATCAGC Direct Gain 0 0.919940134589685 NA NA prediction 0.839880269179371 Functional Gain - TRIM55 ENSG00000147573 CDS Human protein_coding chr8:67049375 chr8:67049375 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41921 0 0 0 0 2 TRIM55 chr8:67049425 5'GT 67049425 Upstream 51bp 38540 chr18 12955479 12955479 1 + A G ESCA 12955479 + 12955459 12955499 41 CAGACACATAGTGGATCTGTATGGCGTGTGACATGGGCCCA CAGACACATAGTGGATCTGTGTGGCGTGTGACATGGGCCCA Direct Gain 0 0.919936997887328 NA NA prediction 0.839873995774657 Functional Gain - SEH1L ENSG00000085415 CDS Human protein_coding chr18:12955479 chr18:12955479 synonymous SNV . 0 21 hm7G_associated_SNPs_41922 0 0 1 0 1 SEH1L chr18:12955462 3'AG 12955462 Downstream 18bp 38541 chr19 4236994 4236994 1 + A G SARC 4236994 + 4236974 4237014 41 GCGGCCCCGAGCCAGGTACTACGTCCAAGTGGCGGCTCAGG GCGGCCCCGAGCCAGGTACTGCGTCCAAGTGGCGGCTCAGG Direct Gain 0 0.919927426663245 NA NA prediction 0.839854853326491 Functional Gain - EBI3 ENSG00000105246 CDS Human protein_coding chr19:4236994 chr19:4236994 nonsynonymous SNV 0.002 0 21 hm7G_associated_SNPs_41923 0 0 0 0 1 EBI3 chr19:4236933 3'AG 4236933 Downstream 62bp 38542 chr19 14065241 14065241 1 + C G BLCA 14065241 + 14065221 14065261 41 ATTGTGGATGAGGACTTCCTCTATGCAGGGTGAGGCTGGGC ATTGTGGATGAGGACTTCCTGTATGCAGGGTGAGGCTGGGC Direct Gain 0 0.919906611998694 NA NA prediction 0.839813223997388 Functional Gain - DCAF15 ENSG00000132017 CDS Human protein_coding chr19:14065241 chr19:14065241 synonymous SNV . 0 21 hm7G_associated_SNPs_41926 0 0 1 0 1 DCAF15 chr19:14065152 3'AG 14065152 Downstream 90bp 38543 chr11 212439 212439 1 + A G LUSC 212439 + 212419 212459 41 CACAGGCTGAAGGAGAGTGTAGCTCCCGTGCTGAGCGTGCT CACAGGCTGAAGGAGAGTGTGGCTCCCGTGCTGAGCGTGCT Direct Gain 0 0.91990579238976 NA NA prediction 0.83981158477952 Functional Gain - RIC8A ENSG00000177963 CDS Human protein_coding chr11:212439 chr11:212439 synonymous SNV . 0 21 hm7G_associated_SNPs_41928 0 0 1 0 2 RIC8A chr11:212416 3'AG 212416 Downstream 24bp 38544 chr11 212439 212439 1 + A G LUSC 212439 + 212419 212459 41 CACAGGCTGAAGGAGAGTGTAGCTCCCGTGCTGAGCGTGCT CACAGGCTGAAGGAGAGTGTGGCTCCCGTGCTGAGCGTGCT Direct Gain 0 0.91990579238976 NA NA prediction 0.83981158477952 Functional Gain - RIC8A ENSG00000177963 CDS Human protein_coding chr11:212439 chr11:212439 synonymous SNV . 0 21 hm7G_associated_SNPs_41928 0 0 1 0 2 RIC8A chr11:212511 5'GT 212511 Upstream 73bp 38545 chr7 23757123 23757123 1 + C G BLCA 23757123 + 23757103 23757143 41 ATCAATAGAAATAAGGATATCATGAAGATTGGTTGCTCACT ATCAATAGAAATAAGGATATGATGAAGATTGGTTGCTCACT Direct Gain 0 0.919903690837969 NA NA prediction 0.839807381675939 Functional Gain - STK31 ENSG00000196335 CDS Human protein_coding chr7:23757123 chr7:23757123 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_41929 0 0 0 0 1 STK31 chr7:23757198 5'GT 23757198 Upstream 76bp 38546 chr22 44372665 44372665 1 + C G UCEC 44372665 + 44372645 44372685 41 GATTCTCGGAATTCTTCCATCTTACCAAGGAGAGGTGCTTT GATTCTCGGAATTCTTCCATGTTACCAAGGAGAGGTGCTTT Direct Gain 0 0.919885785315412 NA NA prediction 0.839771570630824 Functional Gain - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44372665 chr22:44372665 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_41930 0 0 1 0 2 SAMM50 chr22:44372630 3'AG 44372630 Downstream 36bp 38547 chr22 44372665 44372665 1 + C G UCEC 44372665 + 44372645 44372685 41 GATTCTCGGAATTCTTCCATCTTACCAAGGAGAGGTGCTTT GATTCTCGGAATTCTTCCATGTTACCAAGGAGAGGTGCTTT Direct Gain 0 0.919885785315412 NA NA prediction 0.839771570630824 Functional Gain - SAMM50 ENSG00000100347 CDS Human protein_coding chr22:44372665 chr22:44372665 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_41930 0 0 1 0 2 SAMM50 chr22:44372701 5'GT 44372701 Upstream 37bp 38548 chr2 38960696 38960696 1 + T G COAD 38960696 + 38960676 38960716 41 ACACCACCTGGTTCAAGTTTTCTGTGGCTTAAGGAAGTGTG ACACCACCTGGTTCAAGTTTGCTGTGGCTTAAGGAAGTGTG Direct Gain 0 0.919884237009969 NA NA prediction 0.839768474019938 Functional Gain - GALM ENSG00000143891 CDS Human protein_coding chr2:38960696 chr2:38960696 nonsynonymous SNV 0.817 1 21 hm7G_associated_SNPs_41931 0 0 1 0 1 GALM chr2:38960630 3'AG 38960630 Downstream 67bp 38549 chr12 4848403 4848403 1 + C G LIHC 4848403 + 4848383 4848423 41 ATTCGTGAATGAAGCTCTGTCCATTATACAACGGGCCATCA ATTCGTGAATGAAGCTCTGTGCATTATACAACGGGCCATCA Direct Gain 0 0.91988278557254 NA NA prediction 0.83976557114508 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4848403 chr12:4848403 nonsynonymous SNV 0.527 4 21 hm7G_associated_SNPs_41932 0 0 0 0 2 GALNT8 chr12:4848329 3'AG 4848329 Downstream 75bp 38550 chr12 4848403 4848403 1 + C G LIHC 4848403 + 4848383 4848423 41 ATTCGTGAATGAAGCTCTGTCCATTATACAACGGGCCATCA ATTCGTGAATGAAGCTCTGTGCATTATACAACGGGCCATCA Direct Gain 0 0.91988278557254 NA NA prediction 0.83976557114508 Functional Gain - GALNT8 ENSG00000130035 CDS Human protein_coding chr12:4848403 chr12:4848403 nonsynonymous SNV 0.527 4 21 hm7G_associated_SNPs_41932 0 0 0 0 2 GALNT8 chr12:4848495 5'GT 4848495 Upstream 93bp 38551 chr12 56396425 56396425 1 + C G HNSC 56396425 + 56396405 56396445 41 CACCTTCTCTGGTGATAACTCCAGCACCCAGGGATGGAGAG CACCTTCTCTGGTGATAACTGCAGCACCCAGGGATGGAGAG Direct Gain 0 0.919874165778699 NA NA prediction 0.839748331557398 Functional Gain - SUOX ENSG00000139531 CDS Human protein_coding chr12:56396425 chr12:56396425 nonsynonymous SNV 0.168 1 21 hm7G_associated_SNPs_41933 0 0 0 0 1 SUOX chr12:56396327 3'AG 56396327 Downstream 99bp 38552 chr13 45589160 45589160 1 + C G rs181252018 45589160 + 45589140 45589180 41 ACCAGTTAACTATAATGTAACGACAGAGTTTGAAAAAAGGG ACCAGTTAACTATAATGTAAGGACAGAGTTTGAAAAAAGGG Direct Gain 0 0.919862803925148 NA NA prediction 0.839725607850296 Functional Gain - GPALPP1 ENSG00000133114 CDS Human lincRNA chr13:45589160 chr13:45589160 nonsynonymous SNV 0.848 2 21 hm7G_associated_SNPs_41935 0 0 1 1 3 GPALPP1 chr13:45589067 3'AG 45589067 Downstream 94bp 38553 chr13 45589160 45589160 1 + C G rs181252018 45589160 + 45589140 45589180 41 ACCAGTTAACTATAATGTAACGACAGAGTTTGAAAAAAGGG ACCAGTTAACTATAATGTAAGGACAGAGTTTGAAAAAAGGG Direct Gain 0 0.919862803925148 NA NA prediction 0.839725607850296 Functional Gain - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45589160 chr13:45589160 nonsynonymous SNV 0.848 2 21 hm7G_associated_SNPs_41935 0 0 1 1 3 GPALPP1 chr13:45589087 3'AG 45589087 Downstream 74bp 38554 chr13 45589160 45589160 1 + C G rs181252018 45589160 + 45589140 45589180 41 ACCAGTTAACTATAATGTAACGACAGAGTTTGAAAAAAGGG ACCAGTTAACTATAATGTAAGGACAGAGTTTGAAAAAAGGG Direct Gain 0 0.919862803925148 NA NA prediction 0.839725607850296 Functional Gain - GPALPP1 ENSG00000133114 CDS Human protein_coding chr13:45589160 chr13:45589160 nonsynonymous SNV 0.848 2 21 hm7G_associated_SNPs_41935 0 0 1 1 3 GPALPP1 chr13:45589218 5'GT 45589218 Upstream 59bp 38555 chr1 33354567 33354567 1 + C G LUAD 33354567 + 33354547 33354587 41 GCGAGAGAACACAGAGTTCTCAGAGCTGGAGCTGCAGGAGT GCGAGAGAACACAGAGTTCTGAGAGCTGGAGCTGCAGGAGT Direct Gain 0 0.919858814831452 NA NA prediction 0.839717629662904 Functional Gain - HPCA ENSG00000121905 CDS Human protein_coding chr1:33354567 chr1:33354567 stopgain 0.995 1 21 hm7G_associated_SNPs_41936 0 0 0 0 1 HPCA chr1:33354479 3'AG 33354479 Downstream 89bp 38556 chr1 156261211 156261211 1 + C G LUSC 156261211 + 156261191 156261231 41 GACCTTTGCCGTGGGCCGCTCCTTCCGAGGCTTCGGCTACG GACCTTTGCCGTGGGCCGCTGCTTCCGAGGCTTCGGCTACG Direct Gain 0 0.919833116335558 NA NA prediction 0.839666232671116 Functional Gain - TMEM79 ENSG00000163472 CDS Human protein_coding chr1:156261211 chr1:156261211 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41937 0 0 0 0 1 TMEM79 chr1:156261176 3'AG 156261176 Downstream 36bp 38557 chr19 36370071 36370071 1 + C G OV 36370071 + 36370051 36370091 41 ATCGTCCTCTCCATGCTGCTCCTGCGCAGGAAGAAGCCCTA ATCGTCCTCTCCATGCTGCTGCTGCGCAGGAAGAAGCCCTA Direct Gain 0 0.919828098693534 NA NA prediction 0.839656197387067 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370071 chr19:36370071 synonymous SNV . 0 21 hm7G_associated_SNPs_41938 0 0 1 0 2 APLP1 chr19:36369976 3'AG 36369976 Downstream 96bp 38558 chr19 36370071 36370071 1 + C G OV 36370071 + 36370051 36370091 41 ATCGTCCTCTCCATGCTGCTCCTGCGCAGGAAGAAGCCCTA ATCGTCCTCTCCATGCTGCTGCTGCGCAGGAAGAAGCCCTA Direct Gain 0 0.919828098693534 NA NA prediction 0.839656197387067 Functional Gain - APLP1 ENSG00000105290 CDS Human protein_coding chr19:36370071 chr19:36370071 synonymous SNV . 0 21 hm7G_associated_SNPs_41938 0 0 1 0 2 APLP1 chr19:36370119 5'GT 36370119 Upstream 49bp 38559 chr4 190883020 190883020 1 + A G LUAD 190883020 + 190883000 190883040 41 ACCACAAACTTAAAATAAGTAAAGAAGACAGTAAAATTCTT ACCACAAACTTAAAATAAGTGAAGAAGACAGTAAAATTCTT Direct Gain 0 0.91981796289407 NA NA prediction 0.83963592578814 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190883020 chr4:190883020 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_41940 0 0 0 0 2 FRG1 chr4:190882977 3'AG 190882977 Downstream 44bp 38560 chr4 190883020 190883020 1 + A G LUAD 190883020 + 190883000 190883040 41 ACCACAAACTTAAAATAAGTAAAGAAGACAGTAAAATTCTT ACCACAAACTTAAAATAAGTGAAGAAGACAGTAAAATTCTT Direct Gain 0 0.91981796289407 NA NA prediction 0.83963592578814 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190883020 chr4:190883020 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_41940 0 0 0 0 2 FRG1 chr4:190883087 5'GT 190883087 Upstream 68bp 38561 chr13 32352677 32352677 1 + C G BLCA 32352677 + 32352657 32352697 41 TTAATAACTACTTAGAAGCTCTTCCCAAGCAGATGTGTGCC TTAATAACTACTTAGAAGCTGTTCCCAAGCAGATGTGTGCC Direct Gain 0 0.919806619602357 NA NA prediction 0.839613239204713 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32352677 chr13:32352677 nonsynonymous SNV 0.812 2 21 hm7G_associated_SNPs_41941 0 0 0 0 2 RXFP2 chr13:32352649 3'AG 32352649 Downstream 29bp 38562 chr13 32352677 32352677 1 + C G BLCA 32352677 + 32352657 32352697 41 TTAATAACTACTTAGAAGCTCTTCCCAAGCAGATGTGTGCC TTAATAACTACTTAGAAGCTGTTCCCAAGCAGATGTGTGCC Direct Gain 0 0.919806619602357 NA NA prediction 0.839613239204713 Functional Gain - RXFP2 ENSG00000133105 CDS Human protein_coding chr13:32352677 chr13:32352677 nonsynonymous SNV 0.812 2 21 hm7G_associated_SNPs_41941 0 0 0 0 2 RXFP2 chr13:32352720 5'GT 32352720 Upstream 44bp 38563 chr8 75272388 75272388 1 + A G UCEC 75272388 + 75272368 75272408 41 TTAGAAAGAACACCCAGGTTAATGCCTGATAAAGAAAGCAT TTAGAAAGAACACCCAGGTTGATGCCTGATAAAGAAAGCAT Direct Gain 0 0.919793934804587 NA NA prediction 0.839587869609174 Functional Gain - GDAP1 ENSG00000104381 CDS Human protein_coding chr8:75272388 chr8:75272388 synonymous SNV . 0 21 hm7G_associated_SNPs_41944 0 0 1 0 1 GDAP1 chr8:75272372 3'AG 75272372 Downstream 17bp 38564 chr20 44442079 44442079 1 + A G STAD 44442079 + 44442059 44442099 41 GAATACTCTTTTTTCAGGCTACAGCAGGAGCTGATGACCCT GAATACTCTTTTTTCAGGCTGCAGCAGGAGCTGATGACCCT Direct Gain 0 0.919787936492239 NA NA prediction 0.839575872984478 Functional Gain - UBE2C ENSG00000175063 CDS Human protein_coding chr20:44442079 chr20:44442079 synonymous SNV . 0 21 hm7G_associated_SNPs_41946 0 0 1 0 2 UBE2C chr20:44442076 3'AG 44442076 Downstream 4bp 38565 chr20 44442079 44442079 1 + A G STAD 44442079 + 44442059 44442099 41 GAATACTCTTTTTTCAGGCTACAGCAGGAGCTGATGACCCT GAATACTCTTTTTTCAGGCTGCAGCAGGAGCTGATGACCCT Direct Gain 0 0.919787936492239 NA NA prediction 0.839575872984478 Functional Gain - UBE2C ENSG00000175063 CDS Human protein_coding chr20:44442079 chr20:44442079 synonymous SNV . 0 21 hm7G_associated_SNPs_41946 0 0 1 0 2 UBE2C chr20:44442103 5'GT 44442103 Upstream 25bp 38566 chr1 24921959 24921959 1 + T G BRCA 24921959 + 24921939 24921979 41 TCTGGGGGATACCACCTTCTTCTCACTGAACATGACCACCA TCTGGGGGATACCACCTTCTGCTCACTGAACATGACCACCA Direct Gain 0 0.919769076607965 NA NA prediction 0.839538153215929 Functional Gain - NCMAP ENSG00000184454 CDS Human protein_coding chr1:24921959 chr1:24921959 nonsynonymous SNV 0.979 1 21 hm7G_associated_SNPs_41948 0 0 1 0 1 NCMAP chr1:24921915 3'AG 24921915 Downstream 45bp 38567 chr7 98257773 98257773 1 + C G STAD 98257773 + 98257753 98257793 41 GTCGGGGAGCTCAGCCAGTTCAACATATGGGACCGCGTCCT GTCGGGGAGCTCAGCCAGTTGAACATATGGGACCGCGTCCT Direct Gain 0 0.91975780797065 NA NA prediction 0.839515615941299 Functional Gain - NPTX2 ENSG00000106236 CDS Human protein_coding chr7:98257773 chr7:98257773 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41949 0 0 0 0 1 NPTX2 chr7:98257714 3'AG 98257714 Downstream 60bp 38568 chr1 193119499 193119499 1 + C G BLCA 193119499 + 193119479 193119519 41 AGATACGATCAGGAAAGATTCAAAGGAAAAGAAGGCAAGTT AGATACGATCAGGAAAGATTGAAAGGAAAAGAAGGCAAGTT Direct Gain 0 0.919757717277727 NA NA prediction 0.839515434555455 Functional Gain - CDC73 ENSG00000134371 CDS Human protein_coding chr1:193119499 chr1:193119499 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41950 0 0 1 0 1 CDC73 chr1:193119434 3'AG 193119434 Downstream 66bp 38569 chr9 132984969 132984969 1 + C G HNSC 132984969 + 132984949 132984989 41 TTGGACAATGATGGCTACATCACCAGGAATGAGATGCTGGA TTGGACAATGATGGCTACATGACCAGGAATGAGATGCTGGA Direct Gain 0 0.91975689309207 NA NA prediction 0.83951378618414 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132984969 chr9:132984969 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_41951 0 0 1 0 2 NCS1 chr9:132984929 3'AG 132984929 Downstream 41bp 38570 chr9 132984969 132984969 1 + C G HNSC 132984969 + 132984949 132984989 41 TTGGACAATGATGGCTACATCACCAGGAATGAGATGCTGGA TTGGACAATGATGGCTACATGACCAGGAATGAGATGCTGGA Direct Gain 0 0.91975689309207 NA NA prediction 0.83951378618414 Functional Gain - NCS1 ENSG00000107130 CDS Human protein_coding chr9:132984969 chr9:132984969 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_41951 0 0 1 0 2 NCS1 chr9:132985017 5'GT 132985017 Upstream 49bp 38571 chr3 190120149 190120149 1 + C G CESC 190120149 + 190120129 190120169 41 AGCACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAA AGCACAAAATGCCGAGGCCTGTGGTGGGAATGCGTCACAAA Direct Gain 0 0.919720198739206 NA NA prediction 0.839440397478411 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120149 chr3:190120149 synonymous SNV . 0 21 hm7G_associated_SNPs_41956 0 0 0 0 2 CLDN16 chr3:190120126 3'AG 190120126 Downstream 24bp 38572 chr3 190120149 190120149 1 + C G CESC 190120149 + 190120129 190120169 41 AGCACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAA AGCACAAAATGCCGAGGCCTGTGGTGGGAATGCGTCACAAA Direct Gain 0 0.919720198739206 NA NA prediction 0.839440397478411 Functional Gain - CLDN16 ENSG00000113946 CDS Human protein_coding chr3:190120149 chr3:190120149 synonymous SNV . 0 21 hm7G_associated_SNPs_41956 0 0 0 0 2 CLDN16 chr3:190120228 5'GT 190120228 Upstream 80bp 38573 chr19 59060788 59060788 1 + C G LUSC 59060788 + 59060768 59060808 41 TTATGGCTCTTGCGGAGGGTCCTGGTGCTGAGGGTCCCCGC TTATGGCTCTTGCGGAGGGTGCTGGTGCTGAGGGTCCCCGC Direct Gain 0 0.919692006546377 NA NA prediction 0.839384013092755 Functional Gain - TRIM28 ENSG00000130726 CDS Human protein_coding chr19:59060788 chr19:59060788 nonsynonymous SNV 0.009 0 21 hm7G_associated_SNPs_41959 0 0 1 0 1 TRIM28 chr19:59060698 3'AG 59060698 Downstream 91bp 38574 chr7 36462341 36462341 1 + C G LUSC 36462341 + 36462321 36462361 41 CCAAAGTGAATTTATGCCATCCAAAGGATCAGTTACTTTGT CCAAAGTGAATTTATGCCATGCAAAGGATCAGTTACTTTGT Direct Gain 0 0.919681350597741 NA NA prediction 0.839362701195482 Functional Gain - ANLN ENSG00000011426 CDS Human protein_coding chr7:36462341 chr7:36462341 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_41961 0 0 1 0 2 ANLN chr7:36462242 3'AG 36462242 Downstream 100bp 38575 chr7 36462341 36462341 1 + C G LUSC 36462341 + 36462321 36462361 41 CCAAAGTGAATTTATGCCATCCAAAGGATCAGTTACTTTGT CCAAAGTGAATTTATGCCATGCAAAGGATCAGTTACTTTGT Direct Gain 0 0.919681350597741 NA NA prediction 0.839362701195482 Functional Gain - ANLN ENSG00000011426 CDS Human protein_coding chr7:36462341 chr7:36462341 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_41961 0 0 1 0 2 ANLN chr7:36462418 5'GT 36462418 Upstream 78bp 38576 chr4 190883032 190883032 1 + A G READ 190883032 + 190883012 190883052 41 AAATAAGTAAAGAAGACAGTAAAATTCTTAAAAAGGCTCGG AAATAAGTAAAGAAGACAGTGAAATTCTTAAAAAGGCTCGG Direct Gain 0 0.919638200014192 NA NA prediction 0.839276400028385 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190883032 chr4:190883032 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_41965 0 0 0 0 2 FRG1 chr4:190882977 3'AG 190882977 Downstream 56bp 38577 chr4 190883032 190883032 1 + A G READ 190883032 + 190883012 190883052 41 AAATAAGTAAAGAAGACAGTAAAATTCTTAAAAAGGCTCGG AAATAAGTAAAGAAGACAGTGAAATTCTTAAAAAGGCTCGG Direct Gain 0 0.919638200014192 NA NA prediction 0.839276400028385 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190883032 chr4:190883032 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_41965 0 0 0 0 2 FRG1 chr4:190883087 5'GT 190883087 Upstream 56bp 38578 chr19 4423358 4423358 1 + A G LUAD 4423358 + 4423338 4423378 41 ACTTGAGGAAAAAAGGAAAAAGGAAGAAGAGAAACGGTTAA ACTTGAGGAAAAAAGGAAAAGGGAAGAAGAGAAACGGTTAA Direct Gain 0 0.919623354404852 NA NA prediction 0.839246708809705 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4423358 chr19:4423358 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_41967 0 0 1 0 2 CHAF1A chr19:4423332 3'AG 4423332 Downstream 27bp 38579 chr19 4423358 4423358 1 + A G LUAD 4423358 + 4423338 4423378 41 ACTTGAGGAAAAAAGGAAAAAGGAAGAAGAGAAACGGTTAA ACTTGAGGAAAAAAGGAAAAGGGAAGAAGAGAAACGGTTAA Direct Gain 0 0.919623354404852 NA NA prediction 0.839246708809705 Functional Gain - CHAF1A ENSG00000167670 CDS Human protein_coding chr19:4423358 chr19:4423358 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_41967 0 0 1 0 2 CHAF1A chr19:4423392 5'GT 4423392 Upstream 35bp 38580 chr4 88903656 88903656 1 + A G STAD 88903656 + 88903636 88903676 41 TGATTCAGTACCCTGATGCTACAGACGAGGACATCACCTCA TGATTCAGTACCCTGATGCTGCAGACGAGGACATCACCTCA Direct Gain 0 0.919613756537398 NA NA prediction 0.839227513074796 Functional Gain - SPP1 ENSG00000118785 CDS Human protein_coding chr4:88903656 chr4:88903656 nonsynonymous SNV 0.008 1 21 hm7G_associated_SNPs_41968 0 0 1 0 1 SPP1 chr4:88903644 3'AG 88903644 Downstream 13bp 38581 chr19 10736971 10736971 1 + A G UCEC 10736971 + 10736951 10736991 41 CACTTTCAAAGGACCCATTTACAATAGGTAAGAGCTCTGGG CACTTTCAAAGGACCCATTTGCAATAGGTAAGAGCTCTGGG Direct Gain 0 0.919605929255725 NA NA prediction 0.83921185851145 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10736971 chr19:10736971 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_41969 0 0 0 0 2 SLC44A2 chr19:10736929 3'AG 10736929 Downstream 43bp 38582 chr19 10736971 10736971 1 + A G UCEC 10736971 + 10736951 10736991 41 CACTTTCAAAGGACCCATTTACAATAGGTAAGAGCTCTGGG CACTTTCAAAGGACCCATTTGCAATAGGTAAGAGCTCTGGG Direct Gain 0 0.919605929255725 NA NA prediction 0.83921185851145 Functional Gain - SLC44A2 ENSG00000129353 CDS Human protein_coding chr19:10736971 chr19:10736971 nonsynonymous SNV 0.987 0 21 hm7G_associated_SNPs_41969 0 0 0 0 2 SLC44A2 chr19:10736977 5'GT 10736977 Upstream 7bp 38583 chr17 57676826 57676826 1 + A G rs144740311 57676826 + 57676806 57676846 41 GAAGCTCAACTTCGAGAACTAATCAGGAAGCTTAAACAGGT GAAGCTCAACTTCGAGAACTGATCAGGAAGCTTAAACAGGT Direct Gain 0 0.919602642435476 NA NA prediction 0.839205284870953 Functional Gain - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57676826 chr17:57676826 synonymous SNV . 0 21 hm7G_associated_SNPs_41970 0 0 0 0 2 DHX40 chr17:57676736 3'AG 57676736 Downstream 91bp 38584 chr17 57676826 57676826 1 + A G rs144740311 57676826 + 57676806 57676846 41 GAAGCTCAACTTCGAGAACTAATCAGGAAGCTTAAACAGGT GAAGCTCAACTTCGAGAACTGATCAGGAAGCTTAAACAGGT Direct Gain 0 0.919602642435476 NA NA prediction 0.839205284870953 Functional Gain - DHX40 ENSG00000108406 CDS Human protein_coding chr17:57676826 chr17:57676826 synonymous SNV . 0 21 hm7G_associated_SNPs_41970 0 0 0 0 2 DHX40 chr17:57676844 5'GT 57676844 Upstream 19bp 38585 chr12 13367498 13367498 1 + A G COAD 13367498 + 13367478 13367518 41 TCTTGTGGGGGTGTCCATCTACACTAGTCATTATGCGAATC TCTTGTGGGGGTGTCCATCTGCACTAGTCATTATGCGAATC Direct Gain 0 0.919589538040524 NA NA prediction 0.839179076081048 Functional Gain - EMP1 ENSG00000134531 CDS Human protein_coding chr12:13367498 chr12:13367498 nonsynonymous SNV 0.194 5 21 hm7G_associated_SNPs_41972 0 0 0 0 1 EMP1 chr12:13367468 3'AG 13367468 Downstream 31bp 38586 chr4 186278829 186278829 1 + T G COAD 186278829 + 186278809 186278849 41 CTGGTTTCTGTTTCAGTGTTTAAATGGGTGAGAAGAACATT CTGGTTTCTGTTTCAGTGTTGAAATGGGTGAGAAGAACATT Direct Gain 0 0.919588976178558 NA NA prediction 0.839177952357116 Functional Gain - SNX25 ENSG00000109762 CDS Human protein_coding chr4:186278829 chr4:186278829 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_41973 0 0 1 0 1 SNX25 chr4:186278891 5'GT 186278891 Upstream 63bp 38587 chr2 95943153 95943153 1 + A G LUSC 95943153 + 95943133 95943173 41 ACCTGCAAACCTTGAATGCTACAGTGGTAGAGCTGCAGGCC ACCTGCAAACCTTGAATGCTGCAGTGGTAGAGCTGCAGGCC Direct Gain 0 0.919574839291382 NA NA prediction 0.839149678582764 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95943153 chr2:95943153 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_41976 0 0 0 0 2 PROM2 chr2:95943112 3'AG 95943112 Downstream 42bp 38588 chr2 95943153 95943153 1 + A G LUSC 95943153 + 95943133 95943173 41 ACCTGCAAACCTTGAATGCTACAGTGGTAGAGCTGCAGGCC ACCTGCAAACCTTGAATGCTGCAGTGGTAGAGCTGCAGGCC Direct Gain 0 0.919574839291382 NA NA prediction 0.839149678582764 Functional Gain - PROM2 ENSG00000155066 CDS Human protein_coding chr2:95943153 chr2:95943153 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_41976 0 0 0 0 2 PROM2 chr2:95943244 5'GT 95943244 Upstream 92bp 38589 chr11 124954737 124954737 1 + A G UCEC 124954737 + 124954717 124954757 41 TCAGATGTTCCTGTACAACTACATTGGCCAGGACGGGATTG TCAGATGTTCCTGTACAACTGCATTGGCCAGGACGGGATTG Direct Gain 0 0.919568306470849 NA NA prediction 0.839136612941697 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124954737 chr11:124954737 nonsynonymous SNV 0.108 0 21 hm7G_associated_SNPs_41977 0 0 0 0 2 SLC37A2 chr11:124954721 3'AG 124954721 Downstream 17bp 38590 chr11 124954737 124954737 1 + A G UCEC 124954737 + 124954717 124954757 41 TCAGATGTTCCTGTACAACTACATTGGCCAGGACGGGATTG TCAGATGTTCCTGTACAACTGCATTGGCCAGGACGGGATTG Direct Gain 0 0.919568306470849 NA NA prediction 0.839136612941697 Functional Gain - SLC37A2 ENSG00000134955 CDS Human protein_coding chr11:124954737 chr11:124954737 nonsynonymous SNV 0.108 0 21 hm7G_associated_SNPs_41977 0 0 0 0 2 SLC37A2 chr11:124954769 5'GT 124954769 Upstream 33bp 38591 chrX 48564750 48564750 1 + A G OV 48564750 + 48564730 48564770 41 GGACTACGTGGAGGACGTGTACACCGTGGATGCCGCCTACT GGACTACGTGGAGGACGTGTGCACCGTGGATGCCGCCTACT Direct Gain 0 0.919563164920672 NA NA prediction 0.839126329841344 Functional Gain - SUV39H1 ENSG00000101945 CDS Human protein_coding chrX:48564750 chrX:48564750 nonsynonymous SNV 0.250 4 21 hm7G_associated_SNPs_41978 0 0 1 0 1 SUV39H1 chrX:48564656 3'AG 48564656 Downstream 95bp 38592 chr3 169710416 169710416 1 + A G UCEC 169710416 + 169710396 169710436 41 TTTCTCATCATTTGGCTCATAACTGGAGGAAGGCACCACTT TTTCTCATCATTTGGCTCATGACTGGAGGAAGGCACCACTT Direct Gain 0 0.919551340125932 NA NA prediction 0.839102680251864 Functional Gain - SEC62 ENSG00000008952 CDS Human protein_coding chr3:169710416 chr3:169710416 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_41979 0 0 1 0 1 SEC62 chr3:169710382 3'AG 169710382 Downstream 35bp 38593 chr1 235611678 235611678 1 + C G BLCA 235611678 + 235611658 235611698 41 TGATAGGCTCCATGACAATTCAAAAGGTGAAGGGATTGCTG TGATAGGCTCCATGACAATTGAAAAGGTGAAGGGATTGCTG Direct Gain 0 0.919543745489462 NA NA prediction 0.839087490978924 Functional Gain - TBCE ENSG00000116957 CDS Human protein_coding chr1:235611678 chr1:235611678 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41980 0 0 1 0 2 TBCE chr1:235611664 3'AG 235611664 Downstream 15bp 38594 chr1 235611678 235611678 1 + C G BLCA 235611678 + 235611658 235611698 41 TGATAGGCTCCATGACAATTCAAAAGGTGAAGGGATTGCTG TGATAGGCTCCATGACAATTGAAAAGGTGAAGGGATTGCTG Direct Gain 0 0.919543745489462 NA NA prediction 0.839087490978924 Functional Gain - TBCE ENSG00000116957 CDS Human protein_coding chr1:235611678 chr1:235611678 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_41980 0 0 1 0 2 TBCE chr1:235611755 5'GT 235611755 Upstream 78bp 38595 chrX 68749004 68749004 1 + A G COAD 68749004 + 68748984 68749024 41 GGCTCCCTGGCTTTATCTGTACAGGTAAAGGCAGGGCACTG GGCTCCCTGGCTTTATCTGTGCAGGTAAAGGCAGGGCACTG Direct Gain 0 0.919517735622605 NA NA prediction 0.839035471245209 Functional Gain - FAM155B ENSG00000130054 CDS Human protein_coding chrX:68749004 chrX:68749004 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_41982 0 0 0 0 1 FAM155B chrX:68749007 5'GT 68749007 Upstream 4bp 38596 chr16 67663410 67663410 1 + C G LGG 67663410 + 67663390 67663430 41 AAGAAAAAGAAAGATGCGCTCTAAGAAAGAAGATTCCTCTG AAGAAAAAGAAAGATGCGCTGTAAGAAAGAAGATTCCTCTG Direct Gain 0 0.919504214626444 NA NA prediction 0.839008429252889 Functional Gain - CTCF ENSG00000102974 CDS Human protein_coding chr16:67663410 chr16:67663410 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_41987 0 0 1 0 1 CTCF chr16:67663436 5'GT 67663436 Upstream 27bp 38597 chr14 21461286 21461286 1 + C G rs578104794 21461286 + 21461266 21461306 41 TATTTCTTCAGATCCGGGCTCGAAATCCAGCATTTCAGCCA TATTTCTTCAGATCCGGGCTGGAAATCCAGCATTTCAGCCA Direct Gain 0 0.919450522366823 NA NA prediction 0.838901044733646 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21461286 chr14:21461286 nonsynonymous SNV 0.869 3 21 hm7G_associated_SNPs_41989 0 0 1 0 2 METTL17 chr14:21461277 3'AG 21461277 Downstream 10bp 38598 chr14 21461286 21461286 1 + C G rs578104794 21461286 + 21461266 21461306 41 TATTTCTTCAGATCCGGGCTCGAAATCCAGCATTTCAGCCA TATTTCTTCAGATCCGGGCTGGAAATCCAGCATTTCAGCCA Direct Gain 0 0.919450522366823 NA NA prediction 0.838901044733646 Functional Gain - METTL17 ENSG00000165792 CDS Human protein_coding chr14:21461286 chr14:21461286 nonsynonymous SNV 0.869 3 21 hm7G_associated_SNPs_41989 0 0 1 0 2 METTL17 chr14:21461350 5'GT 21461350 Upstream 65bp 38599 chr7 99688560 99688560 1 + A G UCEC 99688560 + 99688540 99688580 41 TTTGAGTCTGTCATTGATATAATCAATGGAGAGGTAATACC TTTGAGTCTGTCATTGATATGATCAATGGAGAGGTAATACC Direct Gain 0 0.919441947013299 NA NA prediction 0.838883894026599 Functional Gain - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688560 chr7:99688560 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41990 0 0 1 0 2 COPS6 chr7:99688525 3'AG 99688525 Downstream 36bp 38600 chr7 99688560 99688560 1 + A G UCEC 99688560 + 99688540 99688580 41 TTTGAGTCTGTCATTGATATAATCAATGGAGAGGTAATACC TTTGAGTCTGTCATTGATATGATCAATGGAGAGGTAATACC Direct Gain 0 0.919441947013299 NA NA prediction 0.838883894026599 Functional Gain - COPS6 ENSG00000168090 CDS Human protein_coding chr7:99688560 chr7:99688560 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_41990 0 0 1 0 2 COPS6 chr7:99688572 5'GT 99688572 Upstream 13bp 38601 chr22 38212210 38212210 1 + C G SKCM 38212210 + 38212190 38212230 41 ACACCTTGTGCCCACAGGTTCCGTAGTAAGATGGAAGCTGC ACACCTTGTGCCCACAGGTTGCGTAGTAAGATGGAAGCTGC Direct Gain 0 0.919423903271854 NA NA prediction 0.838847806543707 Functional Gain - GCAT ENSG00000100116 CDS Human protein_coding chr22:38212210 chr22:38212210 nonsynonymous SNV 0.985 5 21 hm7G_associated_SNPs_41991 0 0 0 0 1 GCAT chr22:38212207 3'AG 38212207 Downstream 4bp 38602 chr2 71365639 71365639 1 + C G LUAD 71365639 + 71365619 71365659 41 GATGAATGAAAAAATTGCATCTTTAGAAAAAGAGTTGTTAG GATGAATGAAAAAATTGCATGTTTAGAAAAAGAGTTGTTAG Direct Gain 0 0.919403496059119 NA NA prediction 0.838806992118238 Functional Gain - MPHOSPH10 ENSG00000124383 CDS Human protein_coding chr2:71365639 chr2:71365639 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_41993 0 0 1 0 1 MPHOSPH10 chr2:71365620 3'AG 71365620 Downstream 20bp 38603 chr2 55461327 55461327 1 + A G UCEC 55461327 + 55461307 55461347 41 TGGACGTACTTTGTCTGACTACAATATTCAAAAGGTCTGTC TGGACGTACTTTGTCTGACTGCAATATTCAAAAGGTCTGTC Direct Gain 0 0.919389613560409 NA NA prediction 0.838779227120819 Functional Gain - RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461327 chr2:55461327 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41994 0 0 1 0 2 RPS27A chr2:55461255 3'AG 55461255 Downstream 73bp 38604 chr2 55461327 55461327 1 + A G UCEC 55461327 + 55461307 55461347 41 TGGACGTACTTTGTCTGACTACAATATTCAAAAGGTCTGTC TGGACGTACTTTGTCTGACTGCAATATTCAAAAGGTCTGTC Direct Gain 0 0.919389613560409 NA NA prediction 0.838779227120819 Functional Gain - RPS27A ENSG00000143947 CDS Human protein_coding chr2:55461327 chr2:55461327 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41994 0 0 1 0 2 RPS27A chr2:55461340 5'GT 55461340 Upstream 14bp 38605 chr7 2686796 2686796 1 + T G LUSC 2686796 + 2686776 2686816 41 CGCCGGCATCGCAGTGGGATTCTACGGCAACGGGGAGACCA CGCCGGCATCGCAGTGGGATGCTACGGCAACGGGGAGACCA Direct Gain 0 0.919385844326754 NA NA prediction 0.838771688653508 Functional Gain - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686796 chr7:2686796 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_41995 0 0 1 0 2 TTYH3 chr7:2686776 3'AG 2686776 Downstream 21bp 38606 chr7 2686796 2686796 1 + T G LUSC 2686796 + 2686776 2686816 41 CGCCGGCATCGCAGTGGGATTCTACGGCAACGGGGAGACCA CGCCGGCATCGCAGTGGGATGCTACGGCAACGGGGAGACCA Direct Gain 0 0.919385844326754 NA NA prediction 0.838771688653508 Functional Gain - TTYH3 ENSG00000136295 CDS Human protein_coding chr7:2686796 chr7:2686796 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_41995 0 0 1 0 2 TTYH3 chr7:2686887 5'GT 2686887 Upstream 92bp 38607 chr15 32976851 32976851 1 + A G CESC 32976851 + 32976831 32976871 41 CTTTGATCCGGAACATGACTATCCAGGCTTGGGCAAGTGGG CTTTGATCCGGAACATGACTGTCCAGGCTTGGGCAAGTGGG Direct Gain 0 0.919345333380424 NA NA prediction 0.838690666760847 Functional Gain - SCG5 ENSG00000166922 CDS Human protein_coding chr15:32976851 chr15:32976851 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41998 0 0 0 0 3 SCG5 chr15:32976758 3'AG 32976758 Downstream 94bp 38608 chr15 32976851 32976851 1 + A G CESC 32976851 + 32976831 32976871 41 CTTTGATCCGGAACATGACTATCCAGGCTTGGGCAAGTGGG CTTTGATCCGGAACATGACTGTCCAGGCTTGGGCAAGTGGG Direct Gain 0 0.919345333380424 NA NA prediction 0.838690666760847 Functional Gain - SCG5 ENSG00000166922 CDS Human protein_coding chr15:32976851 chr15:32976851 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41998 0 0 0 0 3 SCG5 chr15:32976761 3'AG 32976761 Downstream 91bp 38609 chr15 32976851 32976851 1 + A G CESC 32976851 + 32976831 32976871 41 CTTTGATCCGGAACATGACTATCCAGGCTTGGGCAAGTGGG CTTTGATCCGGAACATGACTGTCCAGGCTTGGGCAAGTGGG Direct Gain 0 0.919345333380424 NA NA prediction 0.838690666760847 Functional Gain - SCG5 ENSG00000166922 CDS Human protein_coding chr15:32976851 chr15:32976851 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_41998 0 0 0 0 3 SCG5 chr15:32976870 5'GT 32976870 Upstream 20bp 38610 chr5 55086521 55086521 1 + A G UCEC 55086521 + 55086501 55086541 41 GGAAGACTGATGGATATCATAGGCAAAGAAAAGGTACGCCT GGAAGACTGATGGATATCATGGGCAAAGAAAAGGTACGCCT Direct Gain 0 0.919332325642988 NA NA prediction 0.838664651285977 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55086521 chr5:55086521 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_41999 0 0 0 0 1 DDX4 chr5:55086533 5'GT 55086533 Upstream 13bp 38611 chr1 45232776 45232776 1 + C G LUSC 45232776 + 45232756 45232796 41 CCCTTTCTTCCAGATGTCATCAAGGCCTTGCGCCTGGCCAT CCCTTTCTTCCAGATGTCATGAAGGCCTTGCGCCTGGCCAT Direct Gain 0 0.919327461750089 NA NA prediction 0.838654923500179 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45232776 chr1:45232776 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42000 0 0 1 0 1 KIF2C chr1:45232769 3'AG 45232769 Downstream 8bp 38612 chr3 195955035 195955035 1 + T G UCEC 195955035 + 195955015 195955055 41 TGCTGGTCATGGTGGAAGGCTTTGGGGGGAAGGAGGCAGTG TGCTGGTCATGGTGGAAGGCGTTGGGGGGAAGGAGGCAGTG Direct Gain 0 0.919301539092446 NA NA prediction 0.838603078184892 Functional Gain - SLC51A ENSG00000163959 CDS Human protein_coding chr3:195955035 chr3:195955035 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42002 0 0 0 0 1 SLC51A chr3:195954986 3'AG 195954986 Downstream 50bp 38613 chr5 896854 896854 1 + T G COAD 896854 + 896834 896874 41 GATGGCCCCAGCAGTGAAAATCTGGAGGAAGAGACAGAAAA GATGGCCCCAGCAGTGAAAAGCTGGAGGAAGAGACAGAAAA Direct Gain 0 0.919293402461127 NA NA prediction 0.838586804922255 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:896854 chr5:896854 nonsynonymous SNV 0.822 0 21 hm7G_associated_SNPs_42004 0 0 1 0 2 TRIP13 chr5:896780 3'AG 896780 Downstream 75bp 38614 chr5 896854 896854 1 + T G COAD 896854 + 896834 896874 41 GATGGCCCCAGCAGTGAAAATCTGGAGGAAGAGACAGAAAA GATGGCCCCAGCAGTGAAAAGCTGGAGGAAGAGACAGAAAA Direct Gain 0 0.919293402461127 NA NA prediction 0.838586804922255 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:896854 chr5:896854 nonsynonymous SNV 0.822 0 21 hm7G_associated_SNPs_42004 0 0 1 0 2 TRIP13 chr5:896909 5'GT 896909 Upstream 56bp 38615 chr6 72003250 72003250 1 + C G LIHC 72003250 + 72003230 72003270 41 TAGCAGAACTTCAAAGATATCCGATATCAAAATGACTTGAG TAGCAGAACTTCAAAGATATGCGATATCAAAATGACTTGAG Direct Gain 0 0.919284093902068 NA NA prediction 0.838568187804136 Functional Gain - OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003250 chr6:72003250 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42006 0 0 1 0 2 OGFRL1 chr6:72003236 3'AG 72003236 Downstream 15bp 38616 chr6 72003250 72003250 1 + C G LIHC 72003250 + 72003230 72003270 41 TAGCAGAACTTCAAAGATATCCGATATCAAAATGACTTGAG TAGCAGAACTTCAAAGATATGCGATATCAAAATGACTTGAG Direct Gain 0 0.919284093902068 NA NA prediction 0.838568187804136 Functional Gain - OGFRL1 ENSG00000119900 CDS Human protein_coding chr6:72003250 chr6:72003250 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42006 0 0 1 0 2 OGFRL1 chr6:72003314 5'GT 72003314 Upstream 65bp 38617 chr5 169018183 169018183 1 + A G SKCM 169018183 + 169018163 169018203 41 CTGGAGAAATTGGAAGAACAACTAAGCAGAAGCCATGGACA CTGGAGAAATTGGAAGAACAGCTAAGCAGAAGCCATGGACA Direct Gain 0 0.919276480835716 NA NA prediction 0.838552961671431 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018183 chr5:169018183 synonymous SNV . 0 21 hm7G_associated_SNPs_42007 0 0 1 0 2 SPDL1 chr5:169018207 5'GT 169018207 Upstream 25bp 38618 chr5 169018183 169018183 1 + A G SKCM 169018183 + 169018163 169018203 41 CTGGAGAAATTGGAAGAACAACTAAGCAGAAGCCATGGACA CTGGAGAAATTGGAAGAACAGCTAAGCAGAAGCCATGGACA Direct Gain 0 0.919276480835716 NA NA prediction 0.838552961671431 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169018183 chr5:169018183 synonymous SNV . 0 21 hm7G_associated_SNPs_42007 0 0 1 0 2 SPDL1 chr5:169018228 5'GT 169018228 Upstream 46bp 38619 chr4 83375938 83375938 1 + C G BRCA 83375938 + 83375918 83375958 41 GCCGGAATGAAGGTGTACATCTATTCCTCAGGGAGTGTGGA GCCGGAATGAAGGTGTACATGTATTCCTCAGGGAGTGTGGA Direct Gain 0 0.919276428053267 NA NA prediction 0.838552856106533 Functional Gain - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83375938 chr4:83375938 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_42008 0 0 1 0 2 ENOPH1 chr4:83375875 3'AG 83375875 Downstream 64bp 38620 chr4 83375938 83375938 1 + C G BRCA 83375938 + 83375918 83375958 41 GCCGGAATGAAGGTGTACATCTATTCCTCAGGGAGTGTGGA GCCGGAATGAAGGTGTACATGTATTCCTCAGGGAGTGTGGA Direct Gain 0 0.919276428053267 NA NA prediction 0.838552856106533 Functional Gain - ENOPH1 ENSG00000145293 CDS Human protein_coding chr4:83375938 chr4:83375938 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_42008 0 0 1 0 2 ENOPH1 chr4:83376007 5'GT 83376007 Upstream 70bp 38621 chr3 58382831 58382831 1 + C G rs138800867 58382831 + 58382811 58382851 41 CACGCCTCCAATGTGATGCTCGATGGGGACACTTGCCGGCT CACGCCTCCAATGTGATGCTGGATGGGGACACTTGCCGGCT Direct Gain 0 0.919268748687164 NA NA prediction 0.838537497374327 Functional Gain - PXK ENSG00000168297 CDS Human protein_coding chr3:58382831 chr3:58382831 synonymous SNV . 0 21 hm7G_associated_SNPs_42009 0 0 1 0 2 PXK chr3:58382766 3'AG 58382766 Downstream 66bp 38622 chr3 58382831 58382831 1 + C G rs138800867 58382831 + 58382811 58382851 41 CACGCCTCCAATGTGATGCTCGATGGGGACACTTGCCGGCT CACGCCTCCAATGTGATGCTGGATGGGGACACTTGCCGGCT Direct Gain 0 0.919268748687164 NA NA prediction 0.838537497374327 Functional Gain - PXK ENSG00000168297 CDS Human protein_coding chr3:58382831 chr3:58382831 synonymous SNV . 0 21 hm7G_associated_SNPs_42009 0 0 1 0 2 PXK chr3:58382927 5'GT 58382927 Upstream 97bp 38623 chr1 193045081 193045081 1 + A G rs553098955 193045081 + 193045061 193045101 41 CTGTAGAGAAAGTGAAGCGCACAAGAGATGAGCTAGAAGTC CTGTAGAGAAAGTGAAGCGCGCAAGAGATGAGCTAGAAGTC Direct Gain 0 0.919264087409518 NA NA prediction 0.838528174819036 Functional Gain - TROVE2 ENSG00000116747 CDS Human protein_coding chr1:193045081 chr1:193045081 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_42010 0 0 1 0 1 TROVE2 chr1:193045170 5'GT 193045170 Upstream 90bp 38624 chr22 29885226 29885226 1 + C G LUAD 29885226 + 29885206 29885246 41 CACCGGCTGAGGCCAAGTCCCCAGAGAAGGAGGAAGCAAAA CACCGGCTGAGGCCAAGTCCGCAGAGAAGGAGGAAGCAAAA Direct Gain 0 0.919259192398262 NA NA prediction 0.838518384796524 Functional Gain - NEFH ENSG00000100285 CDS Human protein_coding chr22:29885226 chr22:29885226 nonsynonymous SNV 0.334 4 21 hm7G_associated_SNPs_42011 0 0 0 0 1 NEFH chr22:29885281 5'GT 29885281 Upstream 56bp 38625 chr1 26607338 26607338 1 + A G HNSC 26607338 + 26607318 26607358 41 AGTGGACATCTCCCAGGACAACGCCCTGAGGGATGAGATGC AGTGGACATCTCCCAGGACAGCGCCCTGAGGGATGAGATGC Direct Gain 0 0.919254883677444 NA NA prediction 0.838509767354889 Functional Gain - SH3BGRL3 ENSG00000142669 CDS Human protein_coding chr1:26607338 chr1:26607338 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42012 0 0 1 0 2 SH3BGRL3 chr1:26607256 3'AG 26607256 Downstream 83bp 38626 chr1 26607338 26607338 1 + A G HNSC 26607338 + 26607318 26607358 41 AGTGGACATCTCCCAGGACAACGCCCTGAGGGATGAGATGC AGTGGACATCTCCCAGGACAGCGCCCTGAGGGATGAGATGC Direct Gain 0 0.919254883677444 NA NA prediction 0.838509767354889 Functional Gain - SH3BGRL3 ENSG00000142669 CDS Human protein_coding chr1:26607338 chr1:26607338 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42012 0 0 1 0 2 SH3BGRL3 chr1:26607423 5'GT 26607423 Upstream 86bp 38627 chr15 83790730 83790730 1 + T G STAD 83790730 + 83790710 83790750 41 TCTATTATTATGAGTGTTGTTGTTTTTGTGCCAGGAAACAT TCTATTATTATGAGTGTTGTGGTTTTTGTGCCAGGAAACAT Direct Gain 0 0.919254715714069 NA NA prediction 0.838509431428138 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83790730 chr15:83790730 synonymous SNV . 0 21 hm7G_associated_SNPs_42013 0 0 0 0 2 TM6SF1 chr15:83790673 3'AG 83790673 Downstream 58bp 38628 chr15 83790730 83790730 1 + T G STAD 83790730 + 83790710 83790750 41 TCTATTATTATGAGTGTTGTTGTTTTTGTGCCAGGAAACAT TCTATTATTATGAGTGTTGTGGTTTTTGTGCCAGGAAACAT Direct Gain 0 0.919254715714069 NA NA prediction 0.838509431428138 Functional Gain - TM6SF1 ENSG00000136404 CDS Human protein_coding chr15:83790730 chr15:83790730 synonymous SNV . 0 21 hm7G_associated_SNPs_42013 0 0 0 0 2 TM6SF1 chr15:83790755 5'GT 83790755 Upstream 26bp 38629 chr5 55094377 55094377 1 + C G BLCA 55094377 + 55094357 55094397 41 TTCTCAAAAAGAGAAAAGCTCGTTGAAATTCTGCGAAACAT TTCTCAAAAAGAGAAAAGCTGGTTGAAATTCTGCGAAACAT Direct Gain 0 0.919254119371079 NA NA prediction 0.838508238742159 Functional Gain - DDX4 ENSG00000152670 CDS Human protein_coding chr5:55094377 chr5:55094377 synonymous SNV . 0 21 hm7G_associated_SNPs_42014 0 0 0 0 1 DDX4 chr5:55094399 5'GT 55094399 Upstream 23bp 38630 chr5 140024201 140024201 1 + A G KIRC 140024201 + 140024181 140024221 41 TGCAGAAAAGGGTCCTGCTTACTGCCAGCGGCTGTGGCCAG TGCAGAAAAGGGTCCTGCTTGCTGCCAGCGGCTGTGGCCAG Direct Gain 0 0.919248344764032 NA NA prediction 0.838496689528065 Functional Gain - TMCO6 ENSG00000113119 CDS Human protein_coding chr5:140024201 chr5:140024201 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42015 0 0 0 0 1 TMCO6 chr5:140024158 3'AG 140024158 Downstream 44bp 38631 chr6 44218791 44218791 1 + T G KICH 44218791 + 44218771 44218811 41 TTGGTTTCTTTCAGCACTTTTCTGTAGAAGGTCAGTTGGAA TTGGTTTCTTTCAGCACTTTGCTGTAGAAGGTCAGTTGGAA Direct Gain 0 0.919242156249981 NA NA prediction 0.838484312499963 Functional Gain - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218791 chr6:44218791 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_42016 0 0 1 0 1 HSP90AB1 chr6:44218785 3'AG 44218785 Downstream 7bp 38632 chr2 48896897 48896897 1 + A G rs33987892 48896897 + 48896877 48896917 41 TGGATTTAAGCATTCGGGTTACTGATGATGATATTGGTGAA TGGATTTAAGCATTCGGGTTGCTGATGATGATATTGGTGAA Direct Gain 0 0.919231550133102 NA NA prediction 0.838463100266204 Functional Gain - GTF2A1L;STON1-GTF2A1L ENSG00000068781;ENSG00000242441 CDS Human other chr2:48896897 chr2:48896897 nonsynonymous SNV 0.926 1 21 hm7G_associated_SNPs_42018 0 0 0 0 1 GTF2A1L;STON1-GTF2A1L chr2:48896861 3'AG 48896861 Downstream 37bp 38633 chr19 13885340 13885340 1 + A G STAD 13885340 + 13885320 13885360 41 CGCACAAACCCGCAAAGAGTAAGACGGCAGCGGCAGCCTCT CGCACAAACCCGCAAAGAGTGAGACGGCAGCGGCAGCCTCT Direct Gain 0 0.919228497863118 NA NA prediction 0.838456995726236 Functional Gain - C19orf53 ENSG00000104979 CDS Human protein_coding chr19:13885340 chr19:13885340 nonsynonymous SNV 0.236 1 21 hm7G_associated_SNPs_42019 0 0 1 0 1 C19orf53 chr19:13885388 5'GT 13885388 Upstream 49bp 38634 chr1 36762246 36762246 1 + A G READ 36762246 + 36762226 36762266 41 GATATTGAACGTCGTAAAAAACATAAGGAGAGAGATCTTAA GATATTGAACGTCGTAAAAAGCATAAGGAGAGAGATCTTAA Direct Gain 0 0.919215846207292 NA NA prediction 0.838431692414584 Functional Gain - THRAP3 ENSG00000054118 CDS Human protein_coding chr1:36762246 chr1:36762246 synonymous SNV . 0 21 hm7G_associated_SNPs_42021 0 0 1 0 1 THRAP3 chr1:36762184 3'AG 36762184 Downstream 63bp 38635 chr1 84945179 84945179 1 + A G UCEC 84945179 + 84945159 84945199 41 AATGTTCACGCGGTGGAAACAGCAGCAGCGGAAGGTACGCG AATGTTCACGCGGTGGAAACGGCAGCAGCGGAAGGTACGCG Direct Gain 0 0.919200868714062 NA NA prediction 0.838401737428123 Functional Gain - RPF1 ENSG00000117133 CDS Human protein_coding chr1:84945179 chr1:84945179 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_42022 0 0 1 0 1 RPF1 chr1:84945192 5'GT 84945192 Upstream 14bp 38636 chr22 20106642 20106642 1 + T G LUSC 20106642 + 20106622 20106662 41 TGAGCAAGAAATTAAAACACTGGAAGAAGATGAAGAGGAAC TGAGCAAGAAATTAAAACACGGGAAGAAGATGAAGAGGAAC Direct Gain 0 0.919191438293862 NA NA prediction 0.838382876587724 Functional Gain - RANBP1 ENSG00000099901 CDS Human protein_coding chr22:20106642 chr22:20106642 nonsynonymous SNV 0.950 3 21 hm7G_associated_SNPs_42023 0 0 1 0 1 RANBP1 chr22:20106672 5'GT 20106672 Upstream 31bp 38637 chr16 71663380 71663380 1 + A G STAD 71663380 + 71663360 71663400 41 GGAATGCCACAAATGCAAATACTTGTGCACTGGGAGAGGTG GGAATGCCACAAATGCAAATGCTTGTGCACTGGGAGAGGTG Direct Gain 0 0.91918161154562 NA NA prediction 0.83836322309124 Functional Gain - MARVELD3 ENSG00000140832 CDS Human protein_coding chr16:71663380 chr16:71663380 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_42024 0 0 1 0 1 MARVELD3 chr16:71663397 5'GT 71663397 Upstream 18bp 38638 chr8 38883375 38883375 1 + C G CESC 38883375 + 38883355 38883395 41 ATTTGTGGGAACAGTGTGTTCAAGGAGCCACGCAGGCGGGA ATTTGTGGGAACAGTGTGTTGAAGGAGCCACGCAGGCGGGA Direct Gain 0 0.919179807453505 NA NA prediction 0.838359614907011 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38883375 chr8:38883375 stopgain 1.000 1 21 hm7G_associated_SNPs_42025 0 0 1 0 2 ADAM9 chr8:38883322 3'AG 38883322 Downstream 54bp 38639 chr8 38883375 38883375 1 + C G CESC 38883375 + 38883355 38883395 41 ATTTGTGGGAACAGTGTGTTCAAGGAGCCACGCAGGCGGGA ATTTGTGGGAACAGTGTGTTGAAGGAGCCACGCAGGCGGGA Direct Gain 0 0.919179807453505 NA NA prediction 0.838359614907011 Functional Gain - ADAM9 ENSG00000168615 CDS Human protein_coding chr8:38883375 chr8:38883375 stopgain 1.000 1 21 hm7G_associated_SNPs_42025 0 0 1 0 2 ADAM9 chr8:38883403 5'GT 38883403 Upstream 29bp 38640 chr7 73631177 73631177 1 + C G rs144269935 73631177 + 73631157 73631197 41 GCAAAGAGGTCAGAGAAAATCTACCAGCAGAGAAGTCTGTG GCAAAGAGGTCAGAGAAAATGTACCAGCAGAGAAGTCTGTG Direct Gain 0 0.919173522463903 NA NA prediction 0.838347044927806 Functional Gain - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73631177 chr7:73631177 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_42026 0 0 0 0 2 LAT2 chr7:73631155 3'AG 73631155 Downstream 23bp 38641 chr7 73631177 73631177 1 + C G rs144269935 73631177 + 73631157 73631197 41 GCAAAGAGGTCAGAGAAAATCTACCAGCAGAGAAGTCTGTG GCAAAGAGGTCAGAGAAAATGTACCAGCAGAGAAGTCTGTG Direct Gain 0 0.919173522463903 NA NA prediction 0.838347044927806 Functional Gain - LAT2 ENSG00000086730 CDS Human protein_coding chr7:73631177 chr7:73631177 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_42026 0 0 0 0 2 LAT2 chr7:73631194 5'GT 73631194 Upstream 18bp 38642 chr17 1673237 1673237 1 + C G HNSC 1673237 + 1673217 1673257 41 CAAGCTGGCAGCGGCTGTCTCCAACTTCGGCTATGACCTGT CAAGCTGGCAGCGGCTGTCTGCAACTTCGGCTATGACCTGT Direct Gain 0 0.919132570278297 NA NA prediction 0.838265140556593 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1673237 chr17:1673237 nonsynonymous SNV 0.984 5 21 hm7G_associated_SNPs_42031 0 0 1 0 1 SERPINF1 chr17:1673146 3'AG 1673146 Downstream 92bp 38643 chr16 23700918 23700918 1 + A G STAD 23700918 + 23700898 23700938 41 TGAGCTCGCCCGGCTGCCCTACCTACGGACCTGGTTCCGCA TGAGCTCGCCCGGCTGCCCTGCCTACGGACCTGGTTCCGCA Direct Gain 0 0.919126445533171 NA NA prediction 0.838252891066342 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23700918 chr16:23700918 nonsynonymous SNV 0.772 1 21 hm7G_associated_SNPs_42032 0 0 1 0 1 PLK1 chr16:23700997 5'GT 23700997 Upstream 80bp 38644 chr1 99150448 99150448 1 + C G BRCA 99150448 + 99150428 99150468 41 TTTTATTTCTTAGGATGCCTCATTGATGGACATGAACTCCT TTTTATTTCTTAGGATGCCTGATTGATGGACATGAACTCCT Direct Gain 0 0.919116391716914 NA NA prediction 0.838232783433828 Functional Gain - SNX7 ENSG00000162627 CDS Human protein_coding chr1:99150448 chr1:99150448 stopgain 0.987 0 21 hm7G_associated_SNPs_42033 0 0 0 0 1 SNX7 chr1:99150441 3'AG 99150441 Downstream 8bp 38645 chr11 125787139 125787139 1 + T G UCEC 125787139 + 125787119 125787159 41 CATTGGTCAGGCCATCATCTTCTGCCAGGTACACTCTGTGG CATTGGTCAGGCCATCATCTGCTGCCAGGTACACTCTGTGG Direct Gain 0 0.919112269067046 NA NA prediction 0.838224538134093 Functional Gain - DDX25 ENSG00000109832 CDS Human protein_coding chr11:125787139 chr11:125787139 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42034 0 0 0 0 1 DDX25 chr11:125787146 5'GT 125787146 Upstream 8bp 38646 chr7 105189098 105189098 1 + C G HNSC 105189098 + 105189078 105189118 41 TCCAGGTTATGCTGACTCCTCTTCAGAAGAGGTTCAGGTAT TCCAGGTTATGCTGACTCCTGTTCAGAAGAGGTTCAGGTAT Direct Gain 0 0.919098577787982 NA NA prediction 0.838197155575963 Functional Gain - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105189098 chr7:105189098 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_42035 0 0 1 0 2 RINT1;RINT1 chr7:105189001 3'AG 105189001 Downstream 98bp 38647 chr7 105189098 105189098 1 + C G HNSC 105189098 + 105189078 105189118 41 TCCAGGTTATGCTGACTCCTCTTCAGAAGAGGTTCAGGTAT TCCAGGTTATGCTGACTCCTGTTCAGAAGAGGTTCAGGTAT Direct Gain 0 0.919098577787982 NA NA prediction 0.838197155575963 Functional Gain - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105189098 chr7:105189098 nonsynonymous SNV 0.996 2 21 hm7G_associated_SNPs_42035 0 0 1 0 2 RINT1 chr7:105189157 5'GT 105189157 Upstream 60bp 38648 chr5 169020517 169020517 1 + C G CESC 169020517 + 169020497 169020537 41 TGTCTTCAGAGATGCTGGCTCTTCAAATTGAGCTGACAGAA TGTCTTCAGAGATGCTGGCTGTTCAAATTGAGCTGACAGAA Direct Gain 0 0.91907009066457 NA NA prediction 0.838140181329139 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169020517 chr5:169020517 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_42037 0 0 1 0 1 SPDL1 chr5:169020552 5'GT 169020552 Upstream 36bp 38649 chr15 44853224 44853224 1 + A G STAD 44853224 + 44853204 44853244 41 TTTCATCTTTAGCAAAGCAAAGCCAAAAAGAAGAAGAAAGG TTTCATCTTTAGCAAAGCAAGGCCAAAAAGAAGAAGAAAGG Direct Gain 0 0.919069114244092 NA NA prediction 0.838138228488183 Functional Gain - EIF3J ENSG00000104131 CDS Human protein_coding chr15:44853224 chr15:44853224 synonymous SNV . 0 21 hm7G_associated_SNPs_42038 0 0 1 0 1 EIF3J chr15:44853216 3'AG 44853216 Downstream 9bp 38650 chr16 82131750 82131750 1 + A G UCEC 82131750 + 82131730 82131770 41 GACCACCTCCCCGCTGAGGTACAGGAAGACTACGGCCAGGA GACCACCTCCCCGCTGAGGTGCAGGAAGACTACGGCCAGGA Direct Gain 0 0.91906581191621 NA NA prediction 0.83813162383242 Functional Gain - HSD17B2 ENSG00000086696 CDS Human protein_coding chr16:82131750 chr16:82131750 synonymous SNV . 0 21 hm7G_associated_SNPs_42039 0 0 1 0 1 HSD17B2 chr16:82131680 3'AG 82131680 Downstream 71bp 38651 chr11 86055737 86055737 1 + C G LUSC 86055737 + 86055717 86055757 41 CCAAGCCCATCTGAAATGTTCATTCCGGCAAATGTGGTTCT CCAAGCCCATCTGAAATGTTGATTCCGGCAAATGTGGTTCT Direct Gain 0 0.919059363001399 NA NA prediction 0.838118726002798 Functional Gain - HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86055737 chr11:86055737 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42040 0 0 1 3 2 HIKESHI chr11:86055645 3'AG 86055645 Downstream 93bp 38652 chr11 86055737 86055737 1 + C G LUSC 86055737 + 86055717 86055757 41 CCAAGCCCATCTGAAATGTTCATTCCGGCAAATGTGGTTCT CCAAGCCCATCTGAAATGTTGATTCCGGCAAATGTGGTTCT Direct Gain 0 0.919059363001399 NA NA prediction 0.838118726002798 Functional Gain - HIKESHI ENSG00000149196 CDS Human protein_coding chr11:86055737 chr11:86055737 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42040 0 0 1 3 2 HIKESHI chr11:86055763 5'GT 86055763 Upstream 27bp 38653 chrX 49022442 49022442 1 + C G HNSC 49022442 + 49022422 49022462 41 GGCCAGATCGCAGCCCAGATCCTGGAGGGCCGGAGGTAACG GGCCAGATCGCAGCCCAGATGCTGGAGGGCCGGAGGTAACG Direct Gain 0 0.919046213749348 NA NA prediction 0.838092427498697 Functional Gain - MAGIX ENSG00000017621 CDS Human other chrX:49022442 chrX:49022442 nonsynonymous SNV 0.514 3 21 hm7G_associated_SNPs_42041 0 0 0 0 2 MAGIX chrX:49022413 3'AG 49022413 Downstream 30bp 38654 chrX 49022442 49022442 1 + C G HNSC 49022442 + 49022422 49022462 41 GGCCAGATCGCAGCCCAGATCCTGGAGGGCCGGAGGTAACG GGCCAGATCGCAGCCCAGATGCTGGAGGGCCGGAGGTAACG Direct Gain 0 0.919046213749348 NA NA prediction 0.838092427498697 Functional Gain - MAGIX ENSG00000017621 CDS Human other chrX:49022442 chrX:49022442 nonsynonymous SNV 0.514 3 21 hm7G_associated_SNPs_42041 0 0 0 0 2 MAGIX chrX:49022428 3'AG 49022428 Downstream 15bp 38655 chr20 35515883 35515883 1 + C G CESC 35515883 + 35515863 35515903 41 TAAGTGGACTGGAAGCAACTCTTTCTTTGTGAAGGGAGACT TAAGTGGACTGGAAGCAACTGTTTCTTTGTGAAGGGAGACT Direct Gain 0 0.919028227076874 NA NA prediction 0.838056454153748 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35515883 chr20:35515883 nonsynonymous SNV 0.990 4 21 hm7G_associated_SNPs_42044 0 0 0 0 2 TLDC2 chr20:35515858 3'AG 35515858 Downstream 26bp 38656 chr20 35515883 35515883 1 + C G CESC 35515883 + 35515863 35515903 41 TAAGTGGACTGGAAGCAACTCTTTCTTTGTGAAGGGAGACT TAAGTGGACTGGAAGCAACTGTTTCTTTGTGAAGGGAGACT Direct Gain 0 0.919028227076874 NA NA prediction 0.838056454153748 Functional Gain - TLDC2 ENSG00000101342 CDS Human protein_coding chr20:35515883 chr20:35515883 nonsynonymous SNV 0.990 4 21 hm7G_associated_SNPs_42044 0 0 0 0 2 TLDC2 chr20:35515931 5'GT 35515931 Upstream 49bp 38657 chr15 64698620 64698620 1 + C G BLCA 64698620 + 64698600 64698640 41 TCTGGTCTGGAGAAGGCTATCAAGCATAAAGACAAACTGTT TCTGGTCTGGAGAAGGCTATGAAGCATAAAGACAAACTGTT Direct Gain 0 0.919020806716868 NA NA prediction 0.838041613433735 Functional Gain - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64698620 chr15:64698620 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_42045 0 0 0 0 2 TRIP4 chr15:64698529 3'AG 64698529 Downstream 92bp 38658 chr15 64698620 64698620 1 + C G BLCA 64698620 + 64698600 64698640 41 TCTGGTCTGGAGAAGGCTATCAAGCATAAAGACAAACTGTT TCTGGTCTGGAGAAGGCTATGAAGCATAAAGACAAACTGTT Direct Gain 0 0.919020806716868 NA NA prediction 0.838041613433735 Functional Gain - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64698620 chr15:64698620 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_42045 0 0 0 0 2 TRIP4 chr15:64698658 5'GT 64698658 Upstream 39bp 38659 chr12 22215331 22215331 1 + A G LIHC 22215331 + 22215311 22215351 41 GTTGTAGATGAATGGAGAAAAGAAATGGGCCTGTGCTGGAA GTTGTAGATGAATGGAGAAAGGAAATGGGCCTGTGCTGGAA Direct Gain 0 0.919018709887492 NA NA prediction 0.838037419774984 Functional Gain - CMAS ENSG00000111726 CDS Human protein_coding chr12:22215331 chr12:22215331 synonymous SNV . 0 21 hm7G_associated_SNPs_42046 0 0 1 0 1 CMAS chr12:22215368 5'GT 22215368 Upstream 38bp 38660 chr5 41934116 41934116 1 + A G UCEC 41934116 + 41934096 41934136 41 ACATTCTAATCTTATATTCAACTACCAGGTAAGGCTACATA ACATTCTAATCTTATATTCAGCTACCAGGTAAGGCTACATA Direct Gain 0 0.919015355164279 NA NA prediction 0.838030710328559 Functional Gain - FBXO4 ENSG00000151876 CDS Human protein_coding chr5:41934116 chr5:41934116 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_42047 0 0 0 0 2 FBXO4 chr5:41934048 3'AG 41934048 Downstream 69bp 38661 chr5 41934116 41934116 1 + A G UCEC 41934116 + 41934096 41934136 41 ACATTCTAATCTTATATTCAACTACCAGGTAAGGCTACATA ACATTCTAATCTTATATTCAGCTACCAGGTAAGGCTACATA Direct Gain 0 0.919015355164279 NA NA prediction 0.838030710328559 Functional Gain - FBXO4 ENSG00000151876 CDS Human protein_coding chr5:41934116 chr5:41934116 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_42047 0 0 0 0 2 FBXO4 chr5:41934123 5'GT 41934123 Upstream 8bp 38662 chr15 89173308 89173308 1 + C G LUAD 89173308 + 89173288 89173328 41 GGTGGGCCAGCACGGGCACTCATCAGTAGAAGATGCCACGA GGTGGGCCAGCACGGGCACTGATCAGTAGAAGATGCCACGA Direct Gain 0 0.918976130481383 NA NA prediction 0.837952260962765 Functional Gain - AEN ENSG00000181026 CDS Human protein_coding chr15:89173308 chr15:89173308 stopgain 0.411 0 21 hm7G_associated_SNPs_42049 0 0 1 0 1 AEN chr15:89173289 3'AG 89173289 Downstream 20bp 38663 chr2 27293052 27293052 1 + A G UCEC 27293052 + 27293032 27293072 41 CTCCCCATCCTGGAATTGTTACAGCAGGGGTCCCTTGGGCC CTCCCCATCCTGGAATTGTTGCAGCAGGGGTCCCTTGGGCC Direct Gain 0 0.918963337144599 NA NA prediction 0.837926674289197 Functional Gain - AGBL5 ENSG00000084693 CDS Human protein_coding chr2:27293052 chr2:27293052 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_42052 0 0 0 0 1 AGBL5 chr2:27292960 3'AG 27292960 Downstream 93bp 38664 chr16 81319149 81319149 1 + A G COAD 81319149 + 81319129 81319169 41 CCTCATTTCCTTGTAGGCTTAGAGCTTCCACGGGTCAATTA CCTCATTTCCTTGTAGGCTTGGAGCTTCCACGGGTCAATTA Direct Gain 0 0.91895748285454 NA NA prediction 0.83791496570908 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81319149 chr16:81319149 synonymous SNV . 0 21 hm7G_associated_SNPs_42053 0 0 0 0 2 BCO1 chr16:81319145 3'AG 81319145 Downstream 5bp 38665 chr16 81319149 81319149 1 + A G COAD 81319149 + 81319129 81319169 41 CCTCATTTCCTTGTAGGCTTAGAGCTTCCACGGGTCAATTA CCTCATTTCCTTGTAGGCTTGGAGCTTCCACGGGTCAATTA Direct Gain 0 0.91895748285454 NA NA prediction 0.83791496570908 Functional Gain - BCO1 ENSG00000135697 CDS Human protein_coding chr16:81319149 chr16:81319149 synonymous SNV . 0 21 hm7G_associated_SNPs_42053 0 0 0 0 2 BCO1 chr16:81319239 5'GT 81319239 Upstream 91bp 38666 chr10 96361308 96361308 1 + A G rs147978849 96361308 + 96361288 96361328 41 AAATGAATGCTTCAGGACCAATTAAAGAGAAGATGGGGATA AAATGAATGCTTCAGGACCAGTTAAAGAGAAGATGGGGATA Direct Gain 0 0.918946867560448 NA NA prediction 0.837893735120896 Functional Gain - HELLS ENSG00000119969 CDS Human protein_coding chr10:96361308 chr10:96361308 nonsynonymous SNV 0.908 1 21 hm7G_associated_SNPs_42054 0 0 1 2 1 HELLS chr10:96361285 3'AG 96361285 Downstream 24bp 38667 chr16 85689970 85689970 1 + A G rs569636535 85689970 + 85689950 85689990 41 CTGCAGATGGACGAGGAGCTAAGGCGGGAGAGGGAGCGCGA CTGCAGATGGACGAGGAGCTGAGGCGGGAGAGGGAGCGCGA Direct Gain 0 0.91893921536021 NA NA prediction 0.837878430720421 Functional Gain - GSE1 ENSG00000131149 CDS Human protein_coding chr16:85689970 chr16:85689970 synonymous SNV . 0 21 hm7G_associated_SNPs_42055 0 0 1 0 1 GSE1 chr16:85689949 3'AG 85689949 Downstream 22bp 38668 chr2 68615552 68615552 1 + A G LUAD 68615552 + 68615532 68615572 41 TCTTCTGTGAAGAGAATTCCAGTGATGATGATGTGATTCTG TCTTCTGTGAAGAGAATTCCGGTGATGATGATGTGATTCTG Direct Gain 0 0.918916629956481 NA NA prediction 0.837833259912962 Functional Gain - PLEK ENSG00000115956 CDS Human protein_coding chr2:68615552 chr2:68615552 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_42061 0 0 0 0 2 PLEK chr2:68615519 3'AG 68615519 Downstream 34bp 38669 chr2 68615552 68615552 1 + A G LUAD 68615552 + 68615532 68615572 41 TCTTCTGTGAAGAGAATTCCAGTGATGATGATGTGATTCTG TCTTCTGTGAAGAGAATTCCGGTGATGATGATGTGATTCTG Direct Gain 0 0.918916629956481 NA NA prediction 0.837833259912962 Functional Gain - PLEK ENSG00000115956 CDS Human protein_coding chr2:68615552 chr2:68615552 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_42061 0 0 0 0 2 PLEK chr2:68615623 5'GT 68615623 Upstream 72bp 38670 chr1 155288033 155288033 1 + A G GBM 155288033 + 155288013 155288053 41 CTACCGCCTGCTGAAGCTCTATTGCCGGGAGCAGCCCTATT CTACCGCCTGCTGAAGCTCTGTTGCCGGGAGCAGCCCTATT Direct Gain 0 0.918914014227765 NA NA prediction 0.83782802845553 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155288033 chr1:155288033 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_42062 0 0 1 0 2 FDPS chr1:155287960 3'AG 155287960 Downstream 74bp 38671 chr1 155288033 155288033 1 + A G GBM 155288033 + 155288013 155288053 41 CTACCGCCTGCTGAAGCTCTATTGCCGGGAGCAGCCCTATT CTACCGCCTGCTGAAGCTCTGTTGCCGGGAGCAGCCCTATT Direct Gain 0 0.918914014227765 NA NA prediction 0.83782802845553 Functional Gain - FDPS ENSG00000160752 CDS Human protein_coding chr1:155288033 chr1:155288033 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_42062 0 0 1 0 2 FDPS chr1:155288082 5'GT 155288082 Upstream 50bp 38672 chr19 49468795 49468795 1 + A G CESC 49468795 + 49468775 49468815 41 AGATTCGTCAGAATTATTCCACCGACGTGGAGGCAGCCGTC AGATTCGTCAGAATTATTCCGCCGACGTGGAGGCAGCCGTC Direct Gain 0 0.91889281284778 NA NA prediction 0.837785625695561 Functional Gain - FTL ENSG00000087086 CDS Human protein_coding chr19:49468795 chr19:49468795 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_42065 0 0 1 0 1 FTL chr19:49468866 5'GT 49468866 Upstream 72bp 38673 chr1 154245866 154245866 1 + A G CESC 154245866 + 154245846 154245886 41 GATGAAGATGATGATGAGGAAGAAGAAGAAGAAGGGGGCTC GATGAAGATGATGATGAGGAGGAAGAAGAAGAAGGGGGCTC Direct Gain 0 0.918880296511224 NA NA prediction 0.837760593022447 Functional Gain - HAX1 ENSG00000143575 CDS Human protein_coding chr1:154245866 chr1:154245866 synonymous SNV . 0 21 hm7G_associated_SNPs_42066 0 0 1 0 1 HAX1 chr1:154245812 3'AG 154245812 Downstream 55bp 38674 chr3 197680898 197680898 1 + A G UCEC 197680898 + 197680878 197680918 41 ACAGTCACTCCTGGCGGCAAACCAAACAAAACCAGAGTCAT ACAGTCACTCCTGGCGGCAAGCCAAACAAAACCAGAGTCAT Direct Gain 0 0.918871360433415 NA NA prediction 0.83774272086683 Functional Gain - RPL35A ENSG00000182899 CDS Human protein_coding chr3:197680898 chr3:197680898 synonymous SNV . 0 21 hm7G_associated_SNPs_42067 0 0 1 0 1 RPL35A chr3:197680874 3'AG 197680874 Downstream 25bp 38675 chr17 45730168 45730168 1 + C G rs61750353 45730168 + 45730148 45730188 41 ACTCTTTGACATCTAAAGATCCAGATATCAAGGCACAATAT ACTCTTTGACATCTAAAGATGCAGATATCAAGGCACAATAT Direct Gain 0 0.918857306127491 NA NA prediction 0.837714612254982 Functional Gain - KPNB1 ENSG00000108424 CDS Human protein_coding chr17:45730168 chr17:45730168 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42068 0 0 1 0 1 KPNB1 chr17:45730242 5'GT 45730242 Upstream 75bp 38676 chr19 18245512 18245512 1 + C G rs2270623 18245512 + 18245492 18245532 41 AAGGACGCCCGAGAGTTCATCGACAAGCAGGTGGGCGGGCA AAGGACGCCCGAGAGTTCATGGACAAGCAGGTGGGCGGGCA Direct Gain 0 0.918841063252216 NA NA prediction 0.837682126504432 Functional Gain - MAST3 ENSG00000099308 CDS Human protein_coding chr19:18245512 chr19:18245512 nonsynonymous SNV 0.878 0 21 hm7G_associated_SNPs_42070 0 0 1 0 1 MAST3 chr19:18245521 5'GT 18245521 Upstream 10bp 38677 chr11 65116351 65116351 1 + C G LIHC 65116351 + 65116331 65116371 41 TCTTCTGTGATGACTGCGATCGTGGCTACCACATGTACTGT TCTTCTGTGATGACTGCGATGGTGGCTACCACATGTACTGT Direct Gain 0 0.91881760632208 NA NA prediction 0.837635212644161 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65116351 chr11:65116351 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_42074 0 0 1 0 2 DPF2 chr11:65116321 3'AG 65116321 Downstream 31bp 38678 chr11 65116351 65116351 1 + C G LIHC 65116351 + 65116331 65116371 41 TCTTCTGTGATGACTGCGATCGTGGCTACCACATGTACTGT TCTTCTGTGATGACTGCGATGGTGGCTACCACATGTACTGT Direct Gain 0 0.91881760632208 NA NA prediction 0.837635212644161 Functional Gain - DPF2 ENSG00000133884 CDS Human protein_coding chr11:65116351 chr11:65116351 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_42074 0 0 1 0 2 DPF2 chr11:65116402 5'GT 65116402 Upstream 52bp 38679 chr13 21714807 21714807 1 + T G KIRC 21714807 + 21714787 21714827 41 GAAGGAGCCAGAGAAACCGATCGACCGCGAGAAGGTGAAGG GAAGGAGCCAGAGAAACCGAGCGACCGCGAGAAGGTGAAGG Direct Gain 0 0.918790934927042 NA NA prediction 0.837581869854083 Functional Gain - SAP18 ENSG00000150459 CDS Human protein_coding chr13:21714807 chr13:21714807 nonsynonymous SNV 0.162 2 21 hm7G_associated_SNPs_42075 0 0 1 0 1 SAP18 chr13:21714820 5'GT 21714820 Upstream 14bp 38680 chr22 18607016 18607016 1 + A G LIHC 18607016 + 18606996 18607036 41 CAACAACTATGCCCGGGGCCACTACACGGTGGGCAAGGAGA CAACAACTATGCCCGGGGCCGCTACACGGTGGGCAAGGAGA Direct Gain 0 0.91877313330553 NA NA prediction 0.837546266611059 Functional Gain - TUBA8 ENSG00000183785 CDS Human protein_coding chr22:18607016 chr22:18607016 nonsynonymous SNV 0.936 4 21 hm7G_associated_SNPs_42077 0 0 1 0 2 TUBA8 chr22:18606923 3'AG 18606923 Downstream 94bp 38681 chr22 18607016 18607016 1 + A G LIHC 18607016 + 18606996 18607036 41 CAACAACTATGCCCGGGGCCACTACACGGTGGGCAAGGAGA CAACAACTATGCCCGGGGCCGCTACACGGTGGGCAAGGAGA Direct Gain 0 0.91877313330553 NA NA prediction 0.837546266611059 Functional Gain - TUBA8 ENSG00000183785 CDS Human protein_coding chr22:18607016 chr22:18607016 nonsynonymous SNV 0.936 4 21 hm7G_associated_SNPs_42077 0 0 1 0 2 TUBA8 chr22:18607071 5'GT 18607071 Upstream 56bp 38682 chr4 71390657 71390657 1 + A G UCEC 71390657 + 71390637 71390677 41 ACCCTGGGAGGGTTGAATGTACAACAGCAACTGCACCCACA ACCCTGGGAGGGTTGAATGTGCAACAGCAACTGCACCCACA Direct Gain 0 0.918768634870716 NA NA prediction 0.837537269741432 Functional Gain - AMTN ENSG00000187689 CDS Human protein_coding chr4:71390657 chr4:71390657 synonymous SNV . 0 21 hm7G_associated_SNPs_42078 0 0 0 0 2 AMTN chr4:71390589 3'AG 71390589 Downstream 69bp 38683 chr4 71390657 71390657 1 + A G UCEC 71390657 + 71390637 71390677 41 ACCCTGGGAGGGTTGAATGTACAACAGCAACTGCACCCACA ACCCTGGGAGGGTTGAATGTGCAACAGCAACTGCACCCACA Direct Gain 0 0.918768634870716 NA NA prediction 0.837537269741432 Functional Gain - AMTN ENSG00000187689 CDS Human protein_coding chr4:71390657 chr4:71390657 synonymous SNV . 0 21 hm7G_associated_SNPs_42078 0 0 0 0 2 AMTN chr4:71390678 5'GT 71390678 Upstream 22bp 38684 chr11 810350 810350 1 + T G LUAD 810350 + 810330 810370 41 CGAGGCGGACGACGACCGGCTCAACAAGGTAGCGGCCGCCC CGAGGCGGACGACGACCGGCGCAACAAGGTAGCGGCCGCCC Direct Gain 0 0.918767842591815 NA NA prediction 0.83753568518363 Functional Gain - RPLP2 ENSG00000177600 CDS Human protein_coding chr11:810350 chr11:810350 nonsynonymous SNV 0.989 3 21 hm7G_associated_SNPs_42079 0 0 1 0 1 RPLP2 chr11:810357 5'GT 810357 Upstream 8bp 38685 chr10 1058417 1058417 1 + T G BLCA 1058417 + 1058397 1058437 41 TTTTAAAGAAATTGGAAGAATTAGAAAAAGAAGAAGAGCTG TTTTAAAGAAATTGGAAGAAGTAGAAAAAGAAGAAGAGCTG Direct Gain 0 0.918743658683982 NA NA prediction 0.837487317367965 Functional Gain - GTPBP4 ENSG00000107937 CDS Human protein_coding chr10:1058417 chr10:1058417 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42080 0 0 1 0 1 GTPBP4 chr10:1058405 3'AG 1058405 Downstream 13bp 38686 chr9 140150496 140150496 1 + C G HNSC 140150496 + 140150476 140150516 41 CTGGAGCGAGTGTCAGCCATCGCTTCGGAGGGGAAGGCTGA CTGGAGCGAGTGTCAGCCATGGCTTCGGAGGGGAAGGCTGA Direct Gain 0 0.918727430247015 NA NA prediction 0.83745486049403 Functional Gain - NELFB ENSG00000188986 CDS Human protein_coding chr9:140150496 chr9:140150496 nonsynonymous SNV 0.885 1 21 hm7G_associated_SNPs_42081 0 0 1 0 1 NELFB chr9:140150522 5'GT 140150522 Upstream 27bp 38687 chr7 1275520 1275520 1 + A G TGCT 1275520 + 1275500 1275540 41 GAAGAAGGAGAACACGAAAAAGGGCCCGGGGCGGCCGGCGC GAAGAAGGAGAACACGAAAAGGGGCCCGGGGCGGCCGGCGC Direct Gain 0 0.918700885934829 NA NA prediction 0.837401771869658 Functional Gain - UNCX ENSG00000164853 CDS Human protein_coding chr7:1275520 chr7:1275520 nonsynonymous SNV 0.904 4 21 hm7G_associated_SNPs_42083 0 0 0 0 1 UNCX chr7:1275468 3'AG 1275468 Downstream 53bp 38688 chrX 57458421 57458421 1 + C G ESCA 57458421 + 57458401 57458441 41 ACTGAAGAAAATGAAGTACTCTTTTCAGTTGTGGATCGCAA ACTGAAGAAAATGAAGTACTGTTTTCAGTTGTGGATCGCAA Direct Gain 0 0.918698513395426 NA NA prediction 0.837397026790853 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57458421 chrX:57458421 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_42084 0 0 0 0 2 FAAH2 chrX:57458351 3'AG 57458351 Downstream 71bp 38689 chrX 57458421 57458421 1 + C G ESCA 57458421 + 57458401 57458441 41 ACTGAAGAAAATGAAGTACTCTTTTCAGTTGTGGATCGCAA ACTGAAGAAAATGAAGTACTGTTTTCAGTTGTGGATCGCAA Direct Gain 0 0.918698513395426 NA NA prediction 0.837397026790853 Functional Gain - FAAH2 ENSG00000165591 CDS Human protein_coding chrX:57458421 chrX:57458421 nonsynonymous SNV 0.994 2 21 hm7G_associated_SNPs_42084 0 0 0 0 2 FAAH2 chrX:57458470 5'GT 57458470 Upstream 50bp 38690 chr17 9501560 9501560 1 + T G COAD 9501560 + 9501540 9501580 41 TTTTTACATAGTGGGACAATTCGAGTATGGGAATTGGATCT TTTTTACATAGTGGGACAATGCGAGTATGGGAATTGGATCT Direct Gain 0 0.918696003299531 NA NA prediction 0.837392006599062 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9501560 chr17:9501560 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42085 0 0 0 0 2 CFAP52 chr17:9501551 3'AG 9501551 Downstream 10bp 38691 chr17 9501560 9501560 1 + T G COAD 9501560 + 9501540 9501580 41 TTTTTACATAGTGGGACAATTCGAGTATGGGAATTGGATCT TTTTTACATAGTGGGACAATGCGAGTATGGGAATTGGATCT Direct Gain 0 0.918696003299531 NA NA prediction 0.837392006599062 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9501560 chr17:9501560 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42085 0 0 0 0 2 CFAP52 chr17:9501650 5'GT 9501650 Upstream 91bp 38692 chr12 110346398 110346398 1 + A G rs141026601 110346398 + 110346378 110346418 41 ATCATCACCACAGGCGACCAAACTAAAGAAGGAGCAGGAGA ATCATCACCACAGGCGACCAGACTAAAGAAGGAGCAGGAGA Direct Gain 0 0.918693351095633 NA NA prediction 0.837386702191266 Functional Gain - TCHP ENSG00000139437 CDS Human protein_coding chr12:110346398 chr12:110346398 nonsynonymous SNV 0.990 0 21 hm7G_associated_SNPs_42087 0 0 1 0 1 TCHP chr12:110346391 3'AG 110346391 Downstream 8bp 38693 chr17 47121335 47121335 1 + C G BLCA 47121335 + 47121315 47121355 41 TCCTATCCTGGCAGCAGGCTCCCGAGCAGGAGATGGTGCAG TCCTATCCTGGCAGCAGGCTGCCGAGCAGGAGATGGTGCAG Direct Gain 0 0.918641945022903 NA NA prediction 0.837283890045805 Functional Gain - IGF2BP1 ENSG00000159217 CDS Human protein_coding chr17:47121335 chr17:47121335 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_42089 0 0 1 0 1 IGF2BP1 chr17:47121329 3'AG 47121329 Downstream 7bp 38694 chr4 78528861 78528861 1 + T G UCEC 78528861 + 78528841 78528881 41 CTGTGTTTACTTACAGGTGTTCTGGAGGTCTATTACACAAG CTGTGTTTACTTACAGGTGTGCTGGAGGTCTATTACACAAG Direct Gain 0 0.918630359206254 NA NA prediction 0.837260718412508 Functional Gain - CXCL13 ENSG00000156234 CDS Human protein_coding chr4:78528861 chr4:78528861 synonymous SNV . 0 21 hm7G_associated_SNPs_42090 0 0 0 0 1 CXCL13 chr4:78528857 3'AG 78528857 Downstream 5bp 38695 chr2 139318436 139318436 1 + A G COAD 139318436 + 139318416 139318456 41 AGAAATGATGAGATTCATTTACACAGGGAGAGCACCAAACC AGAAATGATGAGATTCATTTGCACAGGGAGAGCACCAAACC Direct Gain 0 0.918620364694442 NA NA prediction 0.837240729388884 Functional Gain - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139318436 chr2:139318436 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42091 0 0 1 0 2 SPOPL chr2:139318375 3'AG 139318375 Downstream 62bp 38696 chr2 139318436 139318436 1 + A G COAD 139318436 + 139318416 139318456 41 AGAAATGATGAGATTCATTTACACAGGGAGAGCACCAAACC AGAAATGATGAGATTCATTTGCACAGGGAGAGCACCAAACC Direct Gain 0 0.918620364694442 NA NA prediction 0.837240729388884 Functional Gain - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139318436 chr2:139318436 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42091 0 0 1 0 2 SPOPL chr2:139318497 5'GT 139318497 Upstream 62bp 38697 chr5 96103182 96103182 1 + C G BRCA 96103182 + 96103162 96103202 41 TACAAAGAAATCAGAGGATTCAAAGGTAAAGACCATAGGAA TACAAAGAAATCAGAGGATTGAAAGGTAAAGACCATAGGAA Direct Gain 0 0.918605701732197 NA NA prediction 0.837211403464395 Functional Gain - CAST ENSG00000153113 CDS Human protein_coding chr5:96103182 chr5:96103182 stopgain 0.094 0 21 hm7G_associated_SNPs_42093 0 0 1 0 2 CAST chr5:96103142 3'AG 96103142 Downstream 41bp 38698 chr5 96103182 96103182 1 + C G BRCA 96103182 + 96103162 96103202 41 TACAAAGAAATCAGAGGATTCAAAGGTAAAGACCATAGGAA TACAAAGAAATCAGAGGATTGAAAGGTAAAGACCATAGGAA Direct Gain 0 0.918605701732197 NA NA prediction 0.837211403464395 Functional Gain - CAST ENSG00000153113 CDS Human protein_coding chr5:96103182 chr5:96103182 stopgain 0.094 0 21 hm7G_associated_SNPs_42093 0 0 1 0 2 CAST chr5:96103186 5'GT 96103186 Upstream 5bp 38699 chr1 47564887 47564887 1 + A G STAD 47564887 + 47564867 47564907 41 CCTTTACTGCTTGGCAAAGTACCCTGAGCATCAGCAGAGAT CCTTTACTGCTTGGCAAAGTGCCCTGAGCATCAGCAGAGAT Direct Gain 0 0.918596953265276 NA NA prediction 0.837193906530552 Functional Gain - CYP4Z1 ENSG00000186160 CDS Human protein_coding chr1:47564887 chr1:47564887 nonsynonymous SNV 0.075 1 21 hm7G_associated_SNPs_42094 0 0 0 0 1 CYP4Z1 chr1:47564956 5'GT 47564956 Upstream 70bp 38700 chr15 40681810 40681810 1 + C G LUSC 40681810 + 40681790 40681830 41 ACCAGAAGTTGACTGAAACTCAGGTAAGAGACCCACCAGAG ACCAGAAGTTGACTGAAACTGAGGTAAGAGACCCACCAGAG Direct Gain 0 0.918569629116599 NA NA prediction 0.837139258233197 Functional Gain - KNSTRN ENSG00000128944 CDS Human protein_coding chr15:40681810 chr15:40681810 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_42097 0 0 1 2 1 KNSTRN chr15:40681812 5'GT 40681812 Upstream 3bp 38701 chr2 28002304 28002304 1 + A G LIHC 28002304 + 28002284 28002324 41 TTTTCTCCCTCCATAGTGAAACAAAGAGTCCTCTTCGTGGA TTTTCTCCCTCCATAGTGAAGCAAAGAGTCCTCTTCGTGGA Direct Gain 0 0.918550474574048 NA NA prediction 0.837100949148097 Functional Gain - MRPL33 ENSG00000243147 CDS Human protein_coding chr2:28002304 chr2:28002304 nonsynonymous SNV 0.012 0 21 hm7G_associated_SNPs_42099 0 0 1 0 1 MRPL33 chr2:28002300 3'AG 28002300 Downstream 5bp 38702 chr5 177569969 177569969 1 + C G rs61751560 177569969 + 177569949 177569989 41 CTGTATCAGCAGGGCATGCTCAGCGTGGCCGAGGAGCTGTG CTGTATCAGCAGGGCATGCTGAGCGTGGCCGAGGAGCTGTG Direct Gain 0 0.918543880043152 NA NA prediction 0.837087760086304 Functional Gain - RMND5B ENSG00000145916 CDS Human protein_coding chr5:177569969 chr5:177569969 synonymous SNV . 0 21 hm7G_associated_SNPs_42100 0 0 1 0 1 RMND5B chr5:177569993 5'GT 177569993 Upstream 25bp 38703 chr15 66781559 66781559 1 + C G HNSC 66781559 + 66781539 66781579 41 ACATGTGTTTGCAGCCTCCTCCAAAACTGCCCAGTGGAGTG ACATGTGTTTGCAGCCTCCTGCAAAACTGCCCAGTGGAGTG Direct Gain 0 0.918533462770676 NA NA prediction 0.837066925541351 Functional Gain - MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66781559 chr15:66781559 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42102 0 0 1 0 2 MAP2K1 chr15:66781553 3'AG 66781553 Downstream 7bp 38704 chr15 66781559 66781559 1 + C G HNSC 66781559 + 66781539 66781579 41 ACATGTGTTTGCAGCCTCCTCCAAAACTGCCCAGTGGAGTG ACATGTGTTTGCAGCCTCCTGCAAAACTGCCCAGTGGAGTG Direct Gain 0 0.918533462770676 NA NA prediction 0.837066925541351 Functional Gain - MAP2K1 ENSG00000169032 CDS Human protein_coding chr15:66781559 chr15:66781559 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42102 0 0 1 0 2 MAP2K1 chr15:66781614 5'GT 66781614 Upstream 56bp 38705 chr3 5216098 5216098 1 + A G GBM 5216098 + 5216078 5216118 41 TGCAAAGAAAAGGATAATATAGGTAAGAAATGACTGGTAAT TGCAAAGAAAAGGATAATATGGGTAAGAAATGACTGGTAAT Direct Gain 0 0.918528898375708 NA NA prediction 0.837057796751415 Functional Gain - ARL8B ENSG00000134108 CDS Human protein_coding chr3:5216098 chr3:5216098 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42103 0 0 1 0 2 ARL8B chr3:5216029 3'AG 5216029 Downstream 70bp 38706 chr3 5216098 5216098 1 + A G GBM 5216098 + 5216078 5216118 41 TGCAAAGAAAAGGATAATATAGGTAAGAAATGACTGGTAAT TGCAAAGAAAAGGATAATATGGGTAAGAAATGACTGGTAAT Direct Gain 0 0.918528898375708 NA NA prediction 0.837057796751415 Functional Gain - ARL8B ENSG00000134108 CDS Human protein_coding chr3:5216098 chr3:5216098 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42103 0 0 1 0 2 ARL8B chr3:5216099 5'GT 5216099 Upstream 2bp 38707 chr18 19203854 19203854 1 + A G STAD 19203854 + 19203834 19203874 41 AGTTTACCTCTGGATACACTACTTGTGGATGTTGAACCTAA AGTTTACCTCTGGATACACTGCTTGTGGATGTTGAACCTAA Direct Gain 0 0.918522949054693 NA NA prediction 0.837045898109386 Functional Gain - SNRPD1 ENSG00000167088 CDS Human protein_coding chr18:19203854 chr18:19203854 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42104 0 0 1 0 1 SNRPD1 chr18:19203900 5'GT 19203900 Upstream 47bp 38708 chr9 71144540 71144540 1 + A G LIHC 71144540 + 71144520 71144560 41 TATCCCAGATTCATGAGAGAACTGGCCGGAGGGGACCCACT TATCCCAGATTCATGAGAGAGCTGGCCGGAGGGGACCCACT Direct Gain 0 0.918521402019137 NA NA prediction 0.837042804038275 Functional Gain - PGM5 ENSG00000154330 CDS Human protein_coding chr9:71144540 chr9:71144540 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42105 0 0 0 0 1 PGM5 chr9:71144483 3'AG 71144483 Downstream 58bp 38709 chr2 234915540 234915540 1 + C G rs11563071 234915540 + 234915520 234915560 41 ACTCTGGCATGGGAGGGTGTCATGAAGGAAAACTACCTTGT ACTCTGGCATGGGAGGGTGTGATGAAGGAAAACTACCTTGT Direct Gain 0 0.918515811320147 NA NA prediction 0.837031622640295 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234915540 chr2:234915540 synonymous SNV . 0 21 hm7G_associated_SNPs_42106 0 0 0 4 2 TRPM8 chr2:234915497 3'AG 234915497 Downstream 44bp 38710 chr2 234915540 234915540 1 + C G rs11563071 234915540 + 234915520 234915560 41 ACTCTGGCATGGGAGGGTGTCATGAAGGAAAACTACCTTGT ACTCTGGCATGGGAGGGTGTGATGAAGGAAAACTACCTTGT Direct Gain 0 0.918515811320147 NA NA prediction 0.837031622640295 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234915540 chr2:234915540 synonymous SNV . 0 21 hm7G_associated_SNPs_42106 0 0 0 4 2 TRPM8 chr2:234915596 5'GT 234915596 Upstream 57bp 38711 chr20 26061815 26061815 1 + C G COAD 26061815 + 26061795 26061835 41 TTCAGTTTCTTTTGATTTCTCCTGCTTAGAAATGGTGAGAG TTCAGTTTCTTTTGATTTCTGCTGCTTAGAAATGGTGAGAG Direct Gain 0 0.918502051350421 NA NA prediction 0.837004102700843 Functional Gain - FAM182A ENSG00000125804 ncRNA_exonic Human processed_transcript chr20:26061815 chr20:26061815 . . 0 21 hm7G_associated_SNPs_42107 0 0 0 0 1 FAM182A chr20:26061800 3'AG 26061800 Downstream 16bp 38712 chr12 88436611 88436611 1 + A G STAD 88436611 + 88436591 88436631 41 TACTTTTTTAGATCAGCCATACCTTTGGGCTCGACTAGATA TACTTTTTTAGATCAGCCATGCCTTTGGGCTCGACTAGATA Direct Gain 0 0.918496819367808 NA NA prediction 0.836993638735616 Functional Gain - C12orf29 ENSG00000133641 CDS Human protein_coding chr12:88436611 chr12:88436611 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_42108 0 0 1 0 2 C12orf29 chr12:88436602 3'AG 88436602 Downstream 10bp 38713 chr12 88436611 88436611 1 + A G STAD 88436611 + 88436591 88436631 41 TACTTTTTTAGATCAGCCATACCTTTGGGCTCGACTAGATA TACTTTTTTAGATCAGCCATGCCTTTGGGCTCGACTAGATA Direct Gain 0 0.918496819367808 NA NA prediction 0.836993638735616 Functional Gain - C12orf29 ENSG00000133641 CDS Human protein_coding chr12:88436611 chr12:88436611 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_42108 0 0 1 0 2 C12orf29 chr12:88436697 5'GT 88436697 Upstream 87bp 38714 chr8 55049858 55049858 1 + C G KIRC 55049858 + 55049838 55049878 41 CAGTATAAGCCTTTGAGTCTCAATAGACTGCAGTATCTTAT CAGTATAAGCCTTTGAGTCTGAATAGACTGCAGTATCTTAT Direct Gain 0 0.918487485846889 NA NA prediction 0.836974971693779 Functional Gain - MRPL15 ENSG00000137547 CDS Human protein_coding chr8:55049858 chr8:55049858 synonymous SNV . 0 21 hm7G_associated_SNPs_42109 0 0 1 0 1 MRPL15 chr8:55049828 3'AG 55049828 Downstream 31bp 38715 chr22 31522647 31522647 1 + C G LUAD 31522647 + 31522627 31522667 41 AAGCGACTCAAGGACGCCCTCTTCACGGACCAGTGGAGTGA AAGCGACTCAAGGACGCCCTGTTCACGGACCAGTGGAGTGA Direct Gain 0 0.918477363434724 NA NA prediction 0.836954726869448 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31522647 chr22:31522647 synonymous SNV . 0 21 hm7G_associated_SNPs_42111 0 0 0 0 2 INPP5J chr22:31522599 3'AG 31522599 Downstream 49bp 38716 chr22 31522647 31522647 1 + C G LUAD 31522647 + 31522627 31522667 41 AAGCGACTCAAGGACGCCCTCTTCACGGACCAGTGGAGTGA AAGCGACTCAAGGACGCCCTGTTCACGGACCAGTGGAGTGA Direct Gain 0 0.918477363434724 NA NA prediction 0.836954726869448 Functional Gain - INPP5J ENSG00000185133 CDS Human protein_coding chr22:31522647 chr22:31522647 synonymous SNV . 0 21 hm7G_associated_SNPs_42111 0 0 0 0 2 INPP5J chr22:31522707 5'GT 31522707 Upstream 61bp 38717 chr1 184567589 184567589 1 + T G BLCA 184567589 + 184567569 184567609 41 AGAATGCTGGATGAAAAAATTGAAAAGGTAAGAAGTGAAAT AGAATGCTGGATGAAAAAATGGAAAAGGTAAGAAGTGAAAT Direct Gain 0 0.918473585090999 NA NA prediction 0.836947170181997 Functional Gain - C1orf21 ENSG00000116667 CDS Human protein_coding chr1:184567589 chr1:184567589 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_42112 0 0 1 0 2 C1orf21 chr1:184567535 3'AG 184567535 Downstream 55bp 38718 chr1 184567589 184567589 1 + T G BLCA 184567589 + 184567569 184567609 41 AGAATGCTGGATGAAAAAATTGAAAAGGTAAGAAGTGAAAT AGAATGCTGGATGAAAAAATGGAAAAGGTAAGAAGTGAAAT Direct Gain 0 0.918473585090999 NA NA prediction 0.836947170181997 Functional Gain - C1orf21 ENSG00000116667 CDS Human protein_coding chr1:184567589 chr1:184567589 nonsynonymous SNV 0.992 3 21 hm7G_associated_SNPs_42112 0 0 1 0 2 C1orf21 chr1:184567595 5'GT 184567595 Upstream 7bp 38719 chr7 16722416 16722416 1 + A G UVM 16722416 + 16722396 16722436 41 TTTTTTTAGGTCTTCAATAAACTCATCAGGAGATATAAGTA TTTTTTTAGGTCTTCAATAAGCTCATCAGGAGATATAAGTA Direct Gain 0 0.918473475308375 NA NA prediction 0.836946950616751 Functional Gain - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16722416 chr7:16722416 synonymous SNV . 0 21 hm7G_associated_SNPs_42113 0 0 1 0 2 BZW2 chr7:16722405 3'AG 16722405 Downstream 12bp 38720 chr7 16722416 16722416 1 + A G UVM 16722416 + 16722396 16722436 41 TTTTTTTAGGTCTTCAATAAACTCATCAGGAGATATAAGTA TTTTTTTAGGTCTTCAATAAGCTCATCAGGAGATATAAGTA Direct Gain 0 0.918473475308375 NA NA prediction 0.836946950616751 Functional Gain - BZW2 ENSG00000136261 CDS Human protein_coding chr7:16722416 chr7:16722416 synonymous SNV . 0 21 hm7G_associated_SNPs_42113 0 0 1 0 2 BZW2 chr7:16722470 5'GT 16722470 Upstream 55bp 38721 chr6 44217460 44217460 1 + T G SARC 44217460 + 44217440 44217480 41 AGTTTGGTGTTGGCTTTTATTCTGCCTACTTGGTGGCAGAG AGTTTGGTGTTGGCTTTTATGCTGCCTACTTGGTGGCAGAG Direct Gain 0 0.918428798727542 NA NA prediction 0.836857597455083 Functional Gain - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44217460 chr6:44217460 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_42116 0 0 1 0 3 HSP90AB1 chr6:44217412 3'AG 44217412 Downstream 49bp 38722 chr6 44217460 44217460 1 + T G SARC 44217460 + 44217440 44217480 41 AGTTTGGTGTTGGCTTTTATTCTGCCTACTTGGTGGCAGAG AGTTTGGTGTTGGCTTTTATGCTGCCTACTTGGTGGCAGAG Direct Gain 0 0.918428798727542 NA NA prediction 0.836857597455083 Functional Gain - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44217460 chr6:44217460 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_42116 0 0 1 0 3 HSP90AB1 chr6:44217442 3'AG 44217442 Downstream 19bp 38723 chr6 44217460 44217460 1 + T G SARC 44217460 + 44217440 44217480 41 AGTTTGGTGTTGGCTTTTATTCTGCCTACTTGGTGGCAGAG AGTTTGGTGTTGGCTTTTATGCTGCCTACTTGGTGGCAGAG Direct Gain 0 0.918428798727542 NA NA prediction 0.836857597455083 Functional Gain - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44217460 chr6:44217460 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_42116 0 0 1 0 3 HSP90AB1 chr6:44217483 5'GT 44217483 Upstream 24bp 38724 chr19 6828659 6828659 1 + C G HNSC 6828659 + 6828639 6828679 41 GCTCAGTGCGTGAACGAGGTCAAGCGAGACAACGAGACACT GCTCAGTGCGTGAACGAGGTGAAGCGAGACAACGAGACACT Direct Gain 0 0.918428507589647 NA NA prediction 0.836857015179294 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828659 chr19:6828659 synonymous SNV . 0 21 hm7G_associated_SNPs_42117 0 0 1 0 2 VAV1 chr19:6828633 3'AG 6828633 Downstream 27bp 38725 chr19 6828659 6828659 1 + C G HNSC 6828659 + 6828639 6828679 41 GCTCAGTGCGTGAACGAGGTCAAGCGAGACAACGAGACACT GCTCAGTGCGTGAACGAGGTGAAGCGAGACAACGAGACACT Direct Gain 0 0.918428507589647 NA NA prediction 0.836857015179294 Functional Gain - VAV1 ENSG00000141968 CDS Human protein_coding chr19:6828659 chr19:6828659 synonymous SNV . 0 21 hm7G_associated_SNPs_42117 0 0 1 0 2 VAV1 chr19:6828719 5'GT 6828719 Upstream 61bp 38726 chrX 49029742 49029742 1 + T G UCEC 49029742 + 49029722 49029762 41 CTACACCTCACAGGATTTCTTCCGAACCCTCATAGCGGCAA CTACACCTCACAGGATTTCTGCCGAACCCTCATAGCGGCAA Direct Gain 0 0.918395894239345 NA NA prediction 0.836791788478689 Functional Gain - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49029742 chrX:49029742 nonsynonymous SNV 0.976 4 21 hm7G_associated_SNPs_42121 0 0 1 0 2 PLP2 chrX:49029735 3'AG 49029735 Downstream 8bp 38727 chrX 49029742 49029742 1 + T G UCEC 49029742 + 49029722 49029762 41 CTACACCTCACAGGATTTCTTCCGAACCCTCATAGCGGCAA CTACACCTCACAGGATTTCTGCCGAACCCTCATAGCGGCAA Direct Gain 0 0.918395894239345 NA NA prediction 0.836791788478689 Functional Gain - PLP2 ENSG00000102007 CDS Human protein_coding chrX:49029742 chrX:49029742 nonsynonymous SNV 0.976 4 21 hm7G_associated_SNPs_42121 0 0 1 0 2 PLP2 chrX:49029830 5'GT 49029830 Upstream 89bp 38728 chr3 15062303 15062303 1 + C G LUSC 15062303 + 15062283 15062323 41 TGTGAAGGTTGCAAAGGTTTCTTCAAAAGGAGTGTGAGGAA TGTGAAGGTTGCAAAGGTTTGTTCAAAAGGAGTGTGAGGAA Direct Gain 0 0.918384861608227 NA NA prediction 0.836769723216454 Functional Gain - NR2C2 ENSG00000177463 CDS Human protein_coding chr3:15062303 chr3:15062303 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42122 0 0 1 0 1 NR2C2 chr3:15062260 3'AG 15062260 Downstream 44bp 38729 chr7 89909148 89909148 1 + A G UCEC 89909148 + 89909128 89909168 41 TCCTTTATTAATAGAAGAATACATGTCATGCCAGGGAAATG TCCTTTATTAATAGAAGAATGCATGTCATGCCAGGGAAATG Direct Gain 0 0.918356118072551 NA NA prediction 0.836712236145103 Functional Gain - CFAP69 ENSG00000105792 CDS Human protein_coding chr7:89909148 chr7:89909148 nonsynonymous SNV 0.976 3 21 hm7G_associated_SNPs_42123 0 0 1 0 1 CFAP69 chr7:89909207 5'GT 89909207 Upstream 60bp 38730 chr8 99963753 99963753 1 + C G HNSC 99963753 + 99963733 99963773 41 TCACATCTGAACAGGAATCTCCACACAAATGTCCCACATGT TCACATCTGAACAGGAATCTGCACACAAATGTCCCACATGT Direct Gain 0 0.918353172823444 NA NA prediction 0.836706345646887 Functional Gain - OSR2 ENSG00000164920 CDS Human protein_coding chr8:99963753 chr8:99963753 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42124 0 0 0 0 1 OSR2 chr8:99963747 3'AG 99963747 Downstream 7bp 38731 chr2 103136368 103136368 1 + C G rs373445180 103136368 + 103136348 103136388 41 TTCCCCTGAAGATGTGGAGTCCATAAGGGACATTCTGACAT TTCCCCTGAAGATGTGGAGTGCATAAGGGACATTCTGACAT Direct Gain 0 0.918342928193714 NA NA prediction 0.836685856387427 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103136368 chr2:103136368 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42125 0 0 0 0 1 SLC9A4 chr2:103136318 3'AG 103136318 Downstream 51bp 38732 chr1 1389795 1389795 1 + A G rs1610766 1389795 + 1389775 1389815 41 GACAGCCGTCACTGGCCGCTACATCGAGGCTCGGCTGGGGA GACAGCCGTCACTGGCCGCTGCATCGAGGCTCGGCTGGGGA Direct Gain 0 0.918340088768904 NA NA prediction 0.836680177537809 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389795 chr1:1389795 nonsynonymous SNV 0.000 4 21 hm7G_associated_SNPs_42126 0 0 0 0 2 ATAD3C chr1:1389725 3'AG 1389725 Downstream 71bp 38733 chr1 1389795 1389795 1 + A G rs1610766 1389795 + 1389775 1389815 41 GACAGCCGTCACTGGCCGCTACATCGAGGCTCGGCTGGGGA GACAGCCGTCACTGGCCGCTGCATCGAGGCTCGGCTGGGGA Direct Gain 0 0.918340088768904 NA NA prediction 0.836680177537809 Functional Gain - ATAD3C ENSG00000215915 CDS Human protein_coding chr1:1389795 chr1:1389795 nonsynonymous SNV 0.000 4 21 hm7G_associated_SNPs_42126 0 0 0 0 2 ATAD3C chr1:1389880 5'GT 1389880 Upstream 86bp 38734 chr1 8037744 8037744 1 + T G UCEC 8037744 + 8037724 8037764 41 TGTTGGCTCATGAAATAGGTTTTGGAAGTAAAGTTACAACA TGTTGGCTCATGAAATAGGTGTTGGAAGTAAAGTTACAACA Direct Gain 0 0.918338852408519 NA NA prediction 0.836677704817037 Functional Gain - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8037744 chr1:8037744 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42127 0 0 1 0 2 PARK7 chr1:8037712 3'AG 8037712 Downstream 33bp 38735 chr1 8037744 8037744 1 + T G UCEC 8037744 + 8037724 8037764 41 TGTTGGCTCATGAAATAGGTTTTGGAAGTAAAGTTACAACA TGTTGGCTCATGAAATAGGTGTTGGAAGTAAAGTTACAACA Direct Gain 0 0.918338852408519 NA NA prediction 0.836677704817037 Functional Gain - PARK7 ENSG00000116288 CDS Human protein_coding chr1:8037744 chr1:8037744 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42127 0 0 1 0 2 PARK7 chr1:8037798 5'GT 8037798 Upstream 55bp 38736 chr6 25670291 25670291 1 + A G CESC 25670291 + 25670271 25670311 41 TGAGGCTAAACTGGAAGAATACACTGGCACCATGGTAAGTA TGAGGCTAAACTGGAAGAATGCACTGGCACCATGGTAAGTA Direct Gain 0 0.918336993425899 NA NA prediction 0.836673986851799 Functional Gain - SCGN ENSG00000079689 CDS Human protein_coding chr6:25670291 chr6:25670291 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_42128 0 0 0 0 2 SCGN chr6:25670227 3'AG 25670227 Downstream 65bp 38737 chr6 25670291 25670291 1 + A G CESC 25670291 + 25670271 25670311 41 TGAGGCTAAACTGGAAGAATACACTGGCACCATGGTAAGTA TGAGGCTAAACTGGAAGAATGCACTGGCACCATGGTAAGTA Direct Gain 0 0.918336993425899 NA NA prediction 0.836673986851799 Functional Gain - SCGN ENSG00000079689 CDS Human protein_coding chr6:25670291 chr6:25670291 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_42128 0 0 0 0 2 SCGN chr6:25670304 5'GT 25670304 Upstream 14bp 38738 chr2 112863615 112863615 1 + C G HNSC 112863615 + 112863595 112863635 41 AAGAGCCTCAAAATCAGTTTCCAATGGAACAGCTAAGCCTG AAGAGCCTCAAAATCAGTTTGCAATGGAACAGCTAAGCCTG Direct Gain 0 0.91832661689466 NA NA prediction 0.83665323378932 Functional Gain - TMEM87B ENSG00000153214 CDS Human protein_coding chr2:112863615 chr2:112863615 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42129 0 0 0 0 2 TMEM87B chr2:112863579 3'AG 112863579 Downstream 37bp 38739 chr2 112863615 112863615 1 + C G HNSC 112863615 + 112863595 112863635 41 AAGAGCCTCAAAATCAGTTTCCAATGGAACAGCTAAGCCTG AAGAGCCTCAAAATCAGTTTGCAATGGAACAGCTAAGCCTG Direct Gain 0 0.91832661689466 NA NA prediction 0.83665323378932 Functional Gain - TMEM87B ENSG00000153214 CDS Human protein_coding chr2:112863615 chr2:112863615 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42129 0 0 0 0 2 TMEM87B chr2:112863652 5'GT 112863652 Upstream 38bp 38740 chr10 124050622 124050622 1 + A G PRAD 124050622 + 124050602 124050642 41 CACGGCCCTGAAGAACCTCTACATGAGTGAGGTGGAGATTA CACGGCCCTGAAGAACCTCTGCATGAGTGAGGTGGAGATTA Direct Gain 0 0.91831776835752 NA NA prediction 0.836635536715041 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124050622 chr10:124050622 nonsynonymous SNV 0.717 4 21 hm7G_associated_SNPs_42131 0 0 0 0 2 BTBD16 chr10:124050595 3'AG 124050595 Downstream 28bp 38741 chr10 124050622 124050622 1 + A G PRAD 124050622 + 124050602 124050642 41 CACGGCCCTGAAGAACCTCTACATGAGTGAGGTGGAGATTA CACGGCCCTGAAGAACCTCTGCATGAGTGAGGTGGAGATTA Direct Gain 0 0.91831776835752 NA NA prediction 0.836635536715041 Functional Gain - BTBD16 ENSG00000138152 CDS Human protein_coding chr10:124050622 chr10:124050622 nonsynonymous SNV 0.717 4 21 hm7G_associated_SNPs_42131 0 0 0 0 2 BTBD16 chr10:124050709 5'GT 124050709 Upstream 88bp 38742 chr15 76161330 76161330 1 + A G COAD 76161330 + 76161310 76161350 41 GTGACTTCAGAAGAAGAGGAAGAAGAAGAAGAGATGGCTGA GTGACTTCAGAAGAAGAGGAGGAAGAAGAAGAGATGGCTGA Direct Gain 0 0.918309595904126 NA NA prediction 0.836619191808252 Functional Gain - UBE2Q2 ENSG00000140367 CDS Human protein_coding chr15:76161330 chr15:76161330 synonymous SNV . 0 21 hm7G_associated_SNPs_42132 0 0 1 0 2 UBE2Q2 chr15:76161292 3'AG 76161292 Downstream 39bp 38743 chr15 76161330 76161330 1 + A G COAD 76161330 + 76161310 76161350 41 GTGACTTCAGAAGAAGAGGAAGAAGAAGAAGAGATGGCTGA GTGACTTCAGAAGAAGAGGAGGAAGAAGAAGAGATGGCTGA Direct Gain 0 0.918309595904126 NA NA prediction 0.836619191808252 Functional Gain - UBE2Q2 ENSG00000140367 CDS Human protein_coding chr15:76161330 chr15:76161330 synonymous SNV . 0 21 hm7G_associated_SNPs_42132 0 0 1 0 2 UBE2Q2 chr15:76161351 5'GT 76161351 Upstream 22bp 38744 chr4 123342504 123342504 1 + A G COAD 123342504 + 123342484 123342524 41 ACCTGCTTGCCAAAGAAGCTAAAAAAGAATTACTTGAAGCT ACCTGCTTGCCAAAGAAGCTGAAAAAGAATTACTTGAAGCT Direct Gain 0 0.918298870402174 NA NA prediction 0.836597740804349 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123342504 chr4:123342504 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42133 0 0 0 0 2 ADAD1 chr4:123342416 3'AG 123342416 Downstream 89bp 38745 chr4 123342504 123342504 1 + A G COAD 123342504 + 123342484 123342524 41 ACCTGCTTGCCAAAGAAGCTAAAAAAGAATTACTTGAAGCT ACCTGCTTGCCAAAGAAGCTGAAAAAGAATTACTTGAAGCT Direct Gain 0 0.918298870402174 NA NA prediction 0.836597740804349 Functional Gain - ADAD1 ENSG00000164113 CDS Human protein_coding chr4:123342504 chr4:123342504 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42133 0 0 0 0 2 ADAD1 chr4:123342545 5'GT 123342545 Upstream 42bp 38746 chr6 24503625 24503625 1 + C G BLCA 24503625 + 24503605 24503645 41 GACAGGCGGGCCCTGGTCCTCAAGCAGCCCATAGGCGTGGC GACAGGCGGGCCCTGGTCCTGAAGCAGCCCATAGGCGTGGC Direct Gain 0 0.918196569871474 NA NA prediction 0.836393139742947 Functional Gain - ALDH5A1 ENSG00000112294 CDS Human protein_coding chr6:24503625 chr6:24503625 synonymous SNV . 0 21 hm7G_associated_SNPs_42136 0 0 1 0 1 ALDH5A1 chr6:24503661 5'GT 24503661 Upstream 37bp 38747 chr5 61923047 61923047 1 + C G rs200779798 61923047 + 61923027 61923067 41 TCTACGAGAAGCTCAAGGCACAGCAGGAGATGCTAGGAGAA TCTACGAGAAGCTCAAGGCAGAGCAGGAGATGCTAGGAGAA Direct Gain 0 0.918187534013729 NA NA prediction 0.836375068027458 Functional Gain - IPO11 ENSG00000086200 CDS Human protein_coding chr5:61923047 chr5:61923047 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_42137 0 0 1 1 1 IPO11 chr5:61922981 3'AG 61922981 Downstream 67bp 38748 chr19 39214647 39214647 1 + A G UCEC 39214647 + 39214627 39214667 41 CAAGCGCGCGGCCCCCTTCAACAACTGGATGGAGAGCGCCA CAAGCGCGCGGCCCCCTTCAGCAACTGGATGGAGAGCGCCA Direct Gain 0 0.91816382317623 NA NA prediction 0.836327646352461 Functional Gain - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39214647 chr19:39214647 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42138 0 0 1 0 2 ACTN4 chr19:39214577 3'AG 39214577 Downstream 71bp 38749 chr19 39214647 39214647 1 + A G UCEC 39214647 + 39214627 39214667 41 CAAGCGCGCGGCCCCCTTCAACAACTGGATGGAGAGCGCCA CAAGCGCGCGGCCCCCTTCAGCAACTGGATGGAGAGCGCCA Direct Gain 0 0.91816382317623 NA NA prediction 0.836327646352461 Functional Gain - ACTN4 ENSG00000130402 CDS Human protein_coding chr19:39214647 chr19:39214647 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42138 0 0 1 0 2 ACTN4 chr19:39214717 5'GT 39214717 Upstream 71bp 38750 chrX 70777411 70777411 1 + A G GBM 70777411 + 70777391 70777431 41 AGTATTGTGGCTGACCAGTTAGAGAAGAATAGGTTGCCTTC AGTATTGTGGCTGACCAGTTGGAGAAGAATAGGTTGCCTTC Direct Gain 0 0.918160255995457 NA NA prediction 0.836320511990914 Functional Gain - OGT ENSG00000147162 CDS Human protein_coding chrX:70777411 chrX:70777411 synonymous SNV . 0 21 hm7G_associated_SNPs_42139 0 0 1 0 1 OGT chrX:70777343 3'AG 70777343 Downstream 69bp 38751 chrX 16669176 16669176 1 + A G UCEC 16669176 + 16669156 16669196 41 ACTGAAGAGGATTTTTGAAAAATATGCAGCCAAAGAAGGTG ACTGAAGAGGATTTTTGAAAGATATGCAGCCAAAGAAGGTG Direct Gain 0 0.918159434360702 NA NA prediction 0.836318868721405 Functional Gain - S100G ENSG00000169906 CDS Human protein_coding chrX:16669176 chrX:16669176 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42140 0 0 0 0 2 S100G chrX:16669122 3'AG 16669122 Downstream 55bp 38752 chrX 16669176 16669176 1 + A G UCEC 16669176 + 16669156 16669196 41 ACTGAAGAGGATTTTTGAAAAATATGCAGCCAAAGAAGGTG ACTGAAGAGGATTTTTGAAAGATATGCAGCCAAAGAAGGTG Direct Gain 0 0.918159434360702 NA NA prediction 0.836318868721405 Functional Gain - S100G ENSG00000169906 CDS Human protein_coding chrX:16669176 chrX:16669176 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42140 0 0 0 0 2 S100G chrX:16669264 5'GT 16669264 Upstream 89bp 38753 chr3 9729572 9729572 1 + A G UCEC 9729572 + 9729552 9729592 41 GTTCTCTGCTCTGAAGACCCAGAGGTAAGTGGAGGCCTGCA GTTCTCTGCTCTGAAGACCCGGAGGTAAGTGGAGGCCTGCA Direct Gain 0 0.918158577019553 NA NA prediction 0.836317154039107 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9729572 chr3:9729572 nonsynonymous SNV 0.986 1 21 hm7G_associated_SNPs_42141 0 0 1 2 2 MTMR14 chr3:9729505 3'AG 9729505 Downstream 68bp 38754 chr3 9729572 9729572 1 + A G UCEC 9729572 + 9729552 9729592 41 GTTCTCTGCTCTGAAGACCCAGAGGTAAGTGGAGGCCTGCA GTTCTCTGCTCTGAAGACCCGGAGGTAAGTGGAGGCCTGCA Direct Gain 0 0.918158577019553 NA NA prediction 0.836317154039107 Functional Gain - MTMR14 ENSG00000163719 CDS Human protein_coding chr3:9729572 chr3:9729572 nonsynonymous SNV 0.986 1 21 hm7G_associated_SNPs_42141 0 0 1 2 2 MTMR14 chr3:9729575 5'GT 9729575 Upstream 4bp 38755 chr8 37993209 37993209 1 + C G LUSC 37993209 + 37993189 37993229 41 ATATTTTATAAAAATGGTGTCAATCAAGGTGTGGCTTACAA ATATTTTATAAAAATGGTGTGAATCAAGGTGTGGCTTACAA Direct Gain 0 0.918156149135323 NA NA prediction 0.836312298270646 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37993209 chr8:37993209 synonymous SNV . 0 21 hm7G_associated_SNPs_42142 0 0 1 0 2 ASH2L chr8:37993186 3'AG 37993186 Downstream 24bp 38756 chr8 37993209 37993209 1 + C G LUSC 37993209 + 37993189 37993229 41 ATATTTTATAAAAATGGTGTCAATCAAGGTGTGGCTTACAA ATATTTTATAAAAATGGTGTGAATCAAGGTGTGGCTTACAA Direct Gain 0 0.918156149135323 NA NA prediction 0.836312298270646 Functional Gain - ASH2L ENSG00000129691 CDS Human protein_coding chr8:37993209 chr8:37993209 synonymous SNV . 0 21 hm7G_associated_SNPs_42142 0 0 1 0 2 ASH2L chr8:37993284 5'GT 37993284 Upstream 76bp 38757 chr5 76173644 76173644 1 + A G BRCA 76173644 + 76173624 76173664 41 CTTTGTAGAACAATTGAAGAAGAAAGGAAAATAAAGGTAAG CTTTGTAGAACAATTGAAGAGGAAAGGAAAATAAAGGTAAG Direct Gain 0 0.9181548186778 NA NA prediction 0.8363096373556 Functional Gain - S100Z ENSG00000171643 CDS Human protein_coding chr5:76173644 chr5:76173644 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42143 0 0 0 0 1 S100Z chr5:76173659 5'GT 76173659 Upstream 16bp 38758 chr4 89425464 89425464 1 + T G COAD 89425464 + 89425444 89425484 41 GAAGAATTTCGGAGAGGATTTTATAAAATGTGCGACGAAGA GAAGAATTTCGGAGAGGATTGTATAAAATGTGCGACGAAGA Direct Gain 0 0.918148446296834 NA NA prediction 0.836296892593667 Functional Gain - HERC5 ENSG00000138646 CDS Human protein_coding chr4:89425464 chr4:89425464 nonsynonymous SNV 0.975 4 21 hm7G_associated_SNPs_42144 0 0 1 0 1 HERC5 chr4:89425383 3'AG 89425383 Downstream 82bp 38759 chr3 167508190 167508190 1 + C G CESC 167508190 + 167508170 167508210 41 TTCTTTCTTGAAGGAGTTTTCAAACATGGTAACTGCTAAAG TTCTTTCTTGAAGGAGTTTTGAAACATGGTAACTGCTAAAG Direct Gain 0 0.918142949409672 NA NA prediction 0.836285898819344 Functional Gain - SERPINI1 ENSG00000163536 CDS Human protein_coding chr3:167508190 chr3:167508190 stopgain 0.929 1 21 hm7G_associated_SNPs_42146 0 0 0 0 1 SERPINI1 chr3:167508160 3'AG 167508160 Downstream 31bp 38760 chr6 44218120 44218120 1 + A G rs13296 44218120 + 44218100 44218140 41 GATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGG GATAAAGATGATGAAGAAAAGCCCAAGATCGAAGATGTGGG Direct Gain 0 0.91814048186693 NA NA prediction 0.83628096373386 Functional Gain - HSP90AB1 ENSG00000096384 CDS Human protein_coding chr6:44218120 chr6:44218120 synonymous SNV . 0 21 hm7G_associated_SNPs_42148 0 0 1 0 1 HSP90AB1 chr6:44218028 3'AG 44218028 Downstream 93bp 38761 chrX 138633371 138633371 1 + T G UCEC 138633371 + 138633351 138633391 41 CACCCAATCATTTAATGACTTCACTCGGGTTGTTGGTGGAG CACCCAATCATTTAATGACTGCACTCGGGTTGTTGGTGGAG Direct Gain 0 0.918106750765531 NA NA prediction 0.836213501531063 Functional Gain - F9 ENSG00000101981 CDS Human protein_coding chrX:138633371 chrX:138633371 nonsynonymous SNV 0.502 1 21 hm7G_associated_SNPs_42151 0 0 0 0 1 F9 chrX:138633423 5'GT 138633423 Upstream 53bp 38762 chr19 34916900 34916900 1 + T G UCEC 34916900 + 34916880 34916920 41 TGTGGTATTTTTCAGGTCTTTCTGTGGAATTTGGAACAATT TGTGGTATTTTTCAGGTCTTGCTGTGGAATTTGGAACAATT Direct Gain 0 0.918082866756159 NA NA prediction 0.836165733512318 Functional Gain - PDCD2L ENSG00000126249 CDS Human protein_coding chr19:34916900 chr19:34916900 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_42154 0 0 0 0 1 PDCD2L chr19:34916895 3'AG 34916895 Downstream 6bp 38763 chr11 49055851 49055851 1 + C G rs61743193 49055851 + 49055831 49055871 41 TAAGTAAAGCCAAAATGGCTCATAGGAGGGAGATTTTAAGA TAAGTAAAGCCAAAATGGCTGATAGGAGGGAGATTTTAAGA Direct Gain 0 0.91808135659475 NA NA prediction 0.836162713189499 Functional Gain - TRIM49B ENSG00000182053 CDS Human protein_coding chr11:49055851 chr11:49055851 nonsynonymous SNV 0.001 1 21 hm7G_associated_SNPs_42155 0 0 0 0 1 TRIM49B chr11:49055928 5'GT 49055928 Upstream 78bp 38764 chr12 27641434 27641434 1 + A G LIHC 27641434 + 27641414 27641454 41 CCTGAAGGGTCAAATTGAAAAGCTGGAGGACCGGGGCCTTG CCTGAAGGGTCAAATTGAAAGGCTGGAGGACCGGGGCCTTG Direct Gain 0 0.918072230743037 NA NA prediction 0.836144461486074 Functional Gain - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27641434 chr12:27641434 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_42157 0 0 1 0 2 SMCO2 chr12:27641393 3'AG 27641393 Downstream 42bp 38765 chr12 27641434 27641434 1 + A G LIHC 27641434 + 27641414 27641454 41 CCTGAAGGGTCAAATTGAAAAGCTGGAGGACCGGGGCCTTG CCTGAAGGGTCAAATTGAAAGGCTGGAGGACCGGGGCCTTG Direct Gain 0 0.918072230743037 NA NA prediction 0.836144461486074 Functional Gain - SMCO2 ENSG00000165935 CDS Human protein_coding chr12:27641434 chr12:27641434 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_42157 0 0 1 0 2 SMCO2 chr12:27641480 5'GT 27641480 Upstream 47bp 38766 chr2 233388488 233388488 1 + C G rs540536012 233388488 + 233388468 233388508 41 CCCGCCCGCAGCAGCCTCCTCCAGCCGCGAGCCCAGCTGCA CCCGCCCGCAGCAGCCTCCTGCAGCCGCGAGCCCAGCTGCA Direct Gain 0 0.918056669433861 NA NA prediction 0.836113338867722 Functional Gain - PRSS56 ENSG00000237412 CDS Human protein_coding chr2:233388488 chr2:233388488 nonsynonymous SNV 0.817 0 21 hm7G_associated_SNPs_42158 0 0 0 0 1 PRSS56 chr2:233388482 3'AG 233388482 Downstream 7bp 38767 chr14 57753022 57753022 1 + C G ESCA 57753022 + 57753002 57753042 41 AAGTTTTTGCATCAGGAAAACCAAAAATAAGTGCACGTAAG AAGTTTTTGCATCAGGAAAAGCAAAAATAAGTGCACGTAAG Direct Gain 0 0.918036107159492 NA NA prediction 0.836072214318984 Functional Gain - AP5M1 ENSG00000053770 CDS Human protein_coding chr14:57753022 chr14:57753022 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42160 0 0 1 0 2 AP5M1 chr14:57752941 3'AG 57752941 Downstream 82bp 38768 chr14 57753022 57753022 1 + C G ESCA 57753022 + 57753002 57753042 41 AAGTTTTTGCATCAGGAAAACCAAAAATAAGTGCACGTAAG AAGTTTTTGCATCAGGAAAAGCAAAAATAAGTGCACGTAAG Direct Gain 0 0.918036107159492 NA NA prediction 0.836072214318984 Functional Gain - AP5M1 ENSG00000053770 CDS Human protein_coding chr14:57753022 chr14:57753022 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42160 0 0 1 0 2 AP5M1 chr14:57753037 5'GT 57753037 Upstream 16bp 38769 chr2 108944119 108944119 1 + A G rs139934549 108944119 + 108944099 108944139 41 TGATACAAAATGATGGCGATATTGAGAAAAGCAGGCGCGCT TGATACAAAATGATGGCGATGTTGAGAAAAGCAGGCGCGCT Direct Gain 0 0.918027439459538 NA NA prediction 0.836054878919077 Functional Gain - SULT1C2P1 ENSG00000237223 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:108944119 chr2:108944119 . . 0 21 hm7G_associated_SNPs_42162 0 0 0 0 2 SULT1C2P1 chr2:108944069 3'AG 108944069 Downstream 51bp 38770 chr2 108944119 108944119 1 + A G rs139934549 108944119 + 108944099 108944139 41 TGATACAAAATGATGGCGATATTGAGAAAAGCAGGCGCGCT TGATACAAAATGATGGCGATGTTGAGAAAAGCAGGCGCGCT Direct Gain 0 0.918027439459538 NA NA prediction 0.836054878919077 Functional Gain - SULT1C2P1 ENSG00000237223 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr2:108944119 chr2:108944119 . . 0 21 hm7G_associated_SNPs_42162 0 0 0 0 2 SULT1C2P1 chr2:108944191 5'GT 108944191 Upstream 73bp 38771 chr11 86097120 86097120 1 + C G BLCA 86097120 + 86097100 86097140 41 TATTATCTGGGGGAATGTATCAGAATTTGTGAGACGGCAGT TATTATCTGGGGGAATGTATGAGAATTTGTGAGACGGCAGT Direct Gain 0 0.918003511551392 NA NA prediction 0.836007023102784 Functional Gain - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86097120 chr11:86097120 stopgain 0.949 1 21 hm7G_associated_SNPs_42166 0 0 0 0 2 CCDC81 chr11:86097093 3'AG 86097093 Downstream 28bp 38772 chr11 86097120 86097120 1 + C G BLCA 86097120 + 86097100 86097140 41 TATTATCTGGGGGAATGTATCAGAATTTGTGAGACGGCAGT TATTATCTGGGGGAATGTATGAGAATTTGTGAGACGGCAGT Direct Gain 0 0.918003511551392 NA NA prediction 0.836007023102784 Functional Gain - CCDC81 ENSG00000149201 CDS Human protein_coding chr11:86097120 chr11:86097120 stopgain 0.949 1 21 hm7G_associated_SNPs_42166 0 0 0 0 2 CCDC81 chr11:86097154 5'GT 86097154 Upstream 35bp 38773 chr4 99363148 99363148 1 + A G UCEC 99363148 + 99363128 99363168 41 TTTTGTCTTCCAGAATGTCTACACAAGGAAGTACAGGATTT TTTTGTCTTCCAGAATGTCTGCACAAGGAAGTACAGGATTT Direct Gain 0 0.917996939076545 NA NA prediction 0.83599387815309 Functional Gain - RAP1GDS1 ENSG00000138698 CDS Human protein_coding chr4:99363148 chr4:99363148 synonymous SNV . 0 21 hm7G_associated_SNPs_42167 0 0 0 0 1 RAP1GDS1 chr4:99363141 3'AG 99363141 Downstream 8bp 38774 chr3 179287650 179287650 1 + A G LUAD 179287650 + 179287630 179287670 41 TTTTTGACATTGGATCCTATACTGTGAGAGCTGGTTATGCT TTTTTGACATTGGATCCTATGCTGTGAGAGCTGGTTATGCT Direct Gain 0 0.917988789040108 NA NA prediction 0.835977578080217 Functional Gain - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179287650 chr3:179287650 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_42168 0 0 1 0 2 ACTL6A chr3:179287612 3'AG 179287612 Downstream 39bp 38775 chr3 179287650 179287650 1 + A G LUAD 179287650 + 179287630 179287670 41 TTTTTGACATTGGATCCTATACTGTGAGAGCTGGTTATGCT TTTTTGACATTGGATCCTATGCTGTGAGAGCTGGTTATGCT Direct Gain 0 0.917988789040108 NA NA prediction 0.835977578080217 Functional Gain - ACTL6A ENSG00000136518 CDS Human protein_coding chr3:179287650 chr3:179287650 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_42168 0 0 1 0 2 ACTL6A chr3:179287688 5'GT 179287688 Upstream 39bp 38776 chr7 98992106 98992106 1 + C G HNSC 98992106 + 98992086 98992126 41 GCCTTGAAGGACCTCAAGATCAAATGACCTGTGAGGAATAT GCCTTGAAGGACCTCAAGATGAAATGACCTGTGAGGAATAT Direct Gain 0 0.917965324032066 NA NA prediction 0.835930648064132 Functional Gain - ARPC1B ENSG00000130429 CDS Human protein_coding chr7:98992106 chr7:98992106 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_42171 0 0 1 0 1 ARPC1B chr7:98992074 3'AG 98992074 Downstream 33bp 38777 chr8 145135007 145135007 1 + C G LUSC 145135007 + 145134987 145135027 41 CAGACTTTCGAAGCAGCCATCCTCACACAGCTGCACCCACG CAGACTTTCGAAGCAGCCATGCTCACACAGCTGCACCCACG Direct Gain 0 0.917950544223171 NA NA prediction 0.835901088446342 Functional Gain - EXOSC4 ENSG00000178896 CDS Human protein_coding chr8:145135007 chr8:145135007 nonsynonymous SNV 0.997 4 21 hm7G_associated_SNPs_42172 0 0 1 0 1 EXOSC4 chr8:145135052 5'GT 145135052 Upstream 46bp 38778 chr1 40537150 40537150 1 + A G BLCA 40537150 + 40537130 40537170 41 CCCAGTTCCTGAGCAGTTCAAGACCCTATGGAACGGGCAGA CCCAGTTCCTGAGCAGTTCAGGACCCTATGGAACGGGCAGA Direct Gain 0 0.917941633405672 NA NA prediction 0.835883266811345 Functional Gain - CAP1 ENSG00000131236 CDS Human protein_coding chr1:40537150 chr1:40537150 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42174 0 0 1 0 1 CAP1 chr1:40537122 3'AG 40537122 Downstream 29bp 38779 chr4 57357634 57357634 1 + C G LUAD 57357634 + 57357614 57357654 41 CATCGTCAGATAGTATGTCTCTAAAAGTAGATGTTGAGGCT CATCGTCAGATAGTATGTCTGTAAAAGTAGATGTTGAGGCT Direct Gain 0 0.917939586125218 NA NA prediction 0.835879172250435 Functional Gain - SRP72 ENSG00000174780 CDS Human protein_coding chr4:57357634 chr4:57357634 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42175 0 0 1 0 1 SRP72 chr4:57357597 3'AG 57357597 Downstream 38bp 38780 chr17 32964221 32964221 1 + C G LUSC 32964221 + 32964201 32964241 41 CCTACTGAGCCTCTGGCTCTCCTACAGTGATGGCACCACAG CCTACTGAGCCTCTGGCTCTGCTACAGTGATGGCACCACAG Direct Gain 0 0.917922114284005 NA NA prediction 0.835844228568009 Functional Gain - TMEM132E ENSG00000181291 CDS Human protein_coding chr17:32964221 chr17:32964221 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42177 0 0 1 0 1 TMEM132E chr17:32964196 3'AG 32964196 Downstream 26bp 38781 chr10 12279185 12279185 1 + C G UCEC 12279185 + 12279165 12279205 41 ACAATACTATGATCATATTTCTAAACAAAAGGAAGAAATTC ACAATACTATGATCATATTTGTAAACAAAAGGAAGAAATTC Direct Gain 0 0.917918519872763 NA NA prediction 0.835837039745527 Functional Gain - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12279185 chr10:12279185 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_42178 0 0 1 0 2 CDC123 chr10:12279143 3'AG 12279143 Downstream 43bp 38782 chr10 12279185 12279185 1 + C G UCEC 12279185 + 12279165 12279205 41 ACAATACTATGATCATATTTCTAAACAAAAGGAAGAAATTC ACAATACTATGATCATATTTGTAAACAAAAGGAAGAAATTC Direct Gain 0 0.917918519872763 NA NA prediction 0.835837039745527 Functional Gain - CDC123 ENSG00000151465 CDS Human protein_coding chr10:12279185 chr10:12279185 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_42178 0 0 1 0 2 CDC123 chr10:12279265 5'GT 12279265 Upstream 81bp 38783 chr6 116558180 116558180 1 + A G LIHC 116558180 + 116558160 116558200 41 TCTGGATAAACCTGGCTGGTACTCCCAAGGGAACGCTGTCC TCTGGATAAACCTGGCTGGTGCTCCCAAGGGAACGCTGTCC Direct Gain 0 0.91790980448899 NA NA prediction 0.835819608977979 Functional Gain - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116558180 chr6:116558180 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42179 0 0 1 0 2 NT5DC1 chr6:116558129 3'AG 116558129 Downstream 52bp 38784 chr6 116558180 116558180 1 + A G LIHC 116558180 + 116558160 116558200 41 TCTGGATAAACCTGGCTGGTACTCCCAAGGGAACGCTGTCC TCTGGATAAACCTGGCTGGTGCTCCCAAGGGAACGCTGTCC Direct Gain 0 0.91790980448899 NA NA prediction 0.835819608977979 Functional Gain - NT5DC1 ENSG00000178425 CDS Human protein_coding chr6:116558180 chr6:116558180 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42179 0 0 1 0 2 NT5DC1 chr6:116558247 5'GT 116558247 Upstream 68bp 38785 chr1 100606442 100606442 1 + T G UCEC 100606442 + 100606422 100606462 41 TAACATTGAAAATTTAAAGTTACTTGGTCCAAGAAGATGCT TAACATTGAAAATTTAAAGTGACTTGGTCCAAGAAGATGCT Direct Gain 0 0.917888773645327 NA NA prediction 0.835777547290655 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606442 chr1:100606442 stopgain 1.000 1 21 hm7G_associated_SNPs_42181 0 0 1 0 1 TRMT13 chr1:100606408 3'AG 100606408 Downstream 35bp 38786 chr3 147130434 147130434 1 + A G READ 147130434 + 147130414 147130454 41 CAAGATGTGCGACAAGTCCTACACGCATCCCAGTTCGCTGC CAAGATGTGCGACAAGTCCTGCACGCATCCCAGTTCGCTGC Direct Gain 0 0.917856083579324 NA NA prediction 0.835712167158648 Functional Gain - ZIC1 ENSG00000152977 CDS Human protein_coding chr3:147130434 chr3:147130434 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42182 0 0 0 0 1 ZIC1 chr3:147130468 5'GT 147130468 Upstream 35bp 38787 chr20 10280025 10280025 1 + A G UCEC 10280025 + 10280005 10280045 41 ATATGGGCAATGAGATCGATACACAGAATCGCCAGATCGAC ATATGGGCAATGAGATCGATGCACAGAATCGCCAGATCGAC Direct Gain 0 0.917855239540736 NA NA prediction 0.835710479081472 Functional Gain - SNAP25 ENSG00000132639 CDS Human protein_coding chr20:10280025 chr20:10280025 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42183 0 0 1 0 1 SNAP25 chr20:10280060 5'GT 10280060 Upstream 36bp 38788 chr15 76222343 76222343 1 + C G BLCA 76222343 + 76222323 76222363 41 TTCAGTGATATGAATATCATCTTGGCTGGAGGCCAGGTGGA TTCAGTGATATGAATATCATGTTGGCTGGAGGCCAGGTGGA Direct Gain 0 0.917845402861371 NA NA prediction 0.835690805722743 Functional Gain - FBXO22 ENSG00000167196 CDS Human protein_coding chr15:76222343 chr15:76222343 nonsynonymous SNV 0.824 0 21 hm7G_associated_SNPs_42185 0 0 1 0 1 FBXO22 chr15:76222390 5'GT 76222390 Upstream 48bp 38789 chr3 140409844 140409844 1 + C G BRCA 140409844 + 140409824 140409864 41 TCCAGCAGAAGACGTGGACTCTTTTGAGATGGAATTCTATG TCCAGCAGAAGACGTGGACTGTTTTGAGATGGAATTCTATG Direct Gain 0 0.917839197070554 NA NA prediction 0.835678394141109 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140409844 chr3:140409844 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42187 0 0 0 0 1 TRIM42 chr3:140409810 3'AG 140409810 Downstream 35bp 38790 chr3 169498529 169498529 1 + T G UCEC 169498529 + 169498509 169498549 41 ACTTCTAGCAATCTCAAGATTCATGCAAGGTAAAAAACCAA ACTTCTAGCAATCTCAAGATGCATGCAAGGTAAAAAACCAA Direct Gain 0 0.917832624295766 NA NA prediction 0.835665248591532 Functional Gain - MYNN ENSG00000085274 CDS Human protein_coding chr3:169498529 chr3:169498529 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42189 0 0 1 0 1 MYNN chr3:169498537 5'GT 169498537 Upstream 9bp 38791 chr4 106575269 106575269 1 + A G rs17036076 106575269 + 106575249 106575289 41 GAAAAGCTGTTTAGAGCTTTAGAAAAGACTGTGAGGCTTTG GAAAAGCTGTTTAGAGCTTTGGAAAAGACTGTGAGGCTTTG Direct Gain 0 0.917826942934284 NA NA prediction 0.835653885868567 Functional Gain - ARHGEF38 ENSG00000236699 CDS Human protein_coding chr4:106575269 chr4:106575269 synonymous SNV . 0 21 hm7G_associated_SNPs_42190 0 0 0 0 2 ARHGEF38 chr4:106575222 3'AG 106575222 Downstream 48bp 38792 chr4 106575269 106575269 1 + A G rs17036076 106575269 + 106575249 106575289 41 GAAAAGCTGTTTAGAGCTTTAGAAAAGACTGTGAGGCTTTG GAAAAGCTGTTTAGAGCTTTGGAAAAGACTGTGAGGCTTTG Direct Gain 0 0.917826942934284 NA NA prediction 0.835653885868567 Functional Gain - ARHGEF38 ENSG00000236699 CDS Human protein_coding chr4:106575269 chr4:106575269 synonymous SNV . 0 21 hm7G_associated_SNPs_42190 0 0 0 0 2 ARHGEF38 chr4:106575326 5'GT 106575326 Upstream 58bp 38793 chr10 71025534 71025534 1 + A G COAD 71025534 + 71025514 71025554 41 GGCTAGAGCACCTGAGGATCACTGTGGGTGTGGACGGCACC GGCTAGAGCACCTGAGGATCGCTGTGGGTGTGGACGGCACC Direct Gain 0 0.917804863776035 NA NA prediction 0.835609727552069 Functional Gain - HKDC1 ENSG00000156510 CDS Human protein_coding chr10:71025534 chr10:71025534 nonsynonymous SNV 0.976 2 21 hm7G_associated_SNPs_42191 0 0 0 0 1 HKDC1 chr10:71025574 5'GT 71025574 Upstream 41bp 38794 chr11 20649626 20649626 1 + A G rs7944684 20649626 + 20649606 20649646 41 CAAATTCCACAACAACTGCTACAGGTATGTAGAGGTACTAC CAAATTCCACAACAACTGCTGCAGGTATGTAGAGGTACTAC Direct Gain 0 0.917794801429843 NA NA prediction 0.835589602859686 Functional Gain - SLC6A5 ENSG00000165970 CDS Human protein_coding chr11:20649626 chr11:20649626 nonsynonymous SNV 0.983 4 21 hm7G_associated_SNPs_42192 0 0 0 0 1 SLC6A5 chr11:20649629 5'GT 20649629 Upstream 4bp 38795 chr8 22277089 22277089 1 + C G BRCA 22277089 + 22277069 22277109 41 CTGAGATGAATGAGGTCTGTCAAGAGGATGAAAGGAAGGGC CTGAGATGAATGAGGTCTGTGAAGAGGATGAAAGGAAGGGC Direct Gain 0 0.917750720507799 NA NA prediction 0.835501441015598 Functional Gain - SLC39A14 ENSG00000104635 CDS Human protein_coding chr8:22277089 chr8:22277089 nonsynonymous SNV 0.998 0 21 hm7G_associated_SNPs_42195 0 0 1 0 1 SLC39A14 chr8:22277065 3'AG 22277065 Downstream 25bp 38796 chr8 125555516 125555516 1 + A G PAAD 125555516 + 125555496 125555536 41 CTATGAGAGATACGATTGCTACAAGGTAGGTGAGAATTATG CTATGAGAGATACGATTGCTGCAAGGTAGGTGAGAATTATG Direct Gain 0 0.917746973907117 NA NA prediction 0.835493947814234 Functional Gain - NDUFB9 ENSG00000147684 CDS Human protein_coding chr8:125555516 chr8:125555516 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_42196 0 0 1 0 1 NDUFB9 chr8:125555520 5'GT 125555520 Upstream 5bp 38797 chr15 90897925 90897925 1 + A G COAD 90897925 + 90897905 90897945 41 ACTTCAGGGAAGAGTGGGTTACCTGGACACTGCTTAGAGAA ACTTCAGGGAAGAGTGGGTTGCCTGGACACTGCTTAGAGAA Direct Gain 0 0.917696060038103 NA NA prediction 0.835392120076205 Functional Gain - ZNF774 ENSG00000196391 CDS Human protein_coding chr15:90897925 chr15:90897925 synonymous SNV . 0 21 hm7G_associated_SNPs_42201 0 0 1 0 1 ZNF774 chr15:90897874 3'AG 90897874 Downstream 52bp 38798 chr5 109178033 109178033 1 + A G LIHC 109178033 + 109178013 109178053 41 ATTTTTTTAAATTTAGGAATAGAAGGACAGTCTGTGGAAGT ATTTTTTTAAATTTAGGAATGGAAGGACAGTCTGTGGAAGT Direct Gain 0 0.917659821376639 NA NA prediction 0.835319642753278 Functional Gain - MAN2A1 ENSG00000112893 CDS Human protein_coding chr5:109178033 chr5:109178033 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_42202 0 0 0 0 1 MAN2A1 chr5:109178029 3'AG 109178029 Downstream 5bp 38799 chr10 98088572 98088572 1 + C G LIHC 98088572 + 98088552 98088592 41 CTTTTACAGAAAGTGATGAACTTATGGGAAAAGAAGGTGAG CTTTTACAGAAAGTGATGAAGTTATGGGAAAAGAAGGTGAG Direct Gain 0 0.917649931471155 NA NA prediction 0.835299862942309 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98088572 chr10:98088572 nonsynonymous SNV 0.841 0 21 hm7G_associated_SNPs_42203 0 0 0 0 2 DNTT chr10:98088482 3'AG 98088482 Downstream 91bp 38800 chr10 98088572 98088572 1 + C G LIHC 98088572 + 98088552 98088592 41 CTTTTACAGAAAGTGATGAACTTATGGGAAAAGAAGGTGAG CTTTTACAGAAAGTGATGAAGTTATGGGAAAAGAAGGTGAG Direct Gain 0 0.917649931471155 NA NA prediction 0.835299862942309 Functional Gain - DNTT ENSG00000107447 CDS Human protein_coding chr10:98088572 chr10:98088572 nonsynonymous SNV 0.841 0 21 hm7G_associated_SNPs_42203 0 0 0 0 2 DNTT chr10:98088587 5'GT 98088587 Upstream 16bp 38801 chr12 57178691 57178691 1 + C G LUAD 57178691 + 57178671 57178711 41 ATAGTTGAACCTGGCTACTTCAGAACGGGAATGACAAACAT ATAGTTGAACCTGGCTACTTGAGAACGGGAATGACAAACAT Direct Gain 0 0.917641250108658 NA NA prediction 0.835282500217315 Functional Gain - HSD17B6 ENSG00000025423 CDS Human protein_coding chr12:57178691 chr12:57178691 nonsynonymous SNV 0.991 4 21 hm7G_associated_SNPs_42205 0 0 1 0 1 HSD17B6 chr12:57178637 3'AG 57178637 Downstream 55bp 38802 chr6 160829798 160829798 1 + A G LGG 160829798 + 160829778 160829818 41 CCTTTAGTGACAGAAATAGTAGGTTCGAAACAAAGGAGGAT CCTTTAGTGACAGAAATAGTGGGTTCGAAACAAAGGAGGAT Direct Gain 0 0.917639835183224 NA NA prediction 0.835279670366448 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160829798 chr6:160829798 synonymous SNV . 0 21 hm7G_associated_SNPs_42206 0 0 1 0 1 SLC22A3 chr6:160829785 3'AG 160829785 Downstream 14bp 38803 chr4 57873112 57873112 1 + A G GBM 57873112 + 57873092 57873132 41 GCCTAAAATACTCTTTAGCTACTGGAAACTGGGGTGATCAA GCCTAAAATACTCTTTAGCTGCTGGAAACTGGGGTGATCAA Direct Gain 0 0.91759229158709 NA NA prediction 0.83518458317418 Functional Gain - POLR2B ENSG00000047315 CDS Human protein_coding chr4:57873112 chr4:57873112 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_42209 0 0 1 0 1 POLR2B chr4:57873168 5'GT 57873168 Upstream 57bp 38804 chr11 6261890 6261890 1 + A G COAD 6261890 + 6261870 6261910 41 TCATGCACTGGTGAAGAAGTACATGAAGCTGCAGCACGTCA TCATGCACTGGTGAAGAAGTGCATGAAGCTGCAGCACGTCA Direct Gain 0 0.917591310236226 NA NA prediction 0.835182620472453 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261890 chr11:6261890 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42210 0 0 0 0 2 CNGA4 chr11:6261869 3'AG 6261869 Downstream 22bp 38805 chr11 6261890 6261890 1 + A G COAD 6261890 + 6261870 6261910 41 TCATGCACTGGTGAAGAAGTACATGAAGCTGCAGCACGTCA TCATGCACTGGTGAAGAAGTGCATGAAGCTGCAGCACGTCA Direct Gain 0 0.917591310236226 NA NA prediction 0.835182620472453 Functional Gain - CNGA4 ENSG00000132259 CDS Human protein_coding chr11:6261890 chr11:6261890 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42210 0 0 0 0 2 CNGA4 chr11:6261941 5'GT 6261941 Upstream 52bp 38806 chrX 129545364 129545364 1 + C G LUSC 129545364 + 129545344 129545384 41 TGGATCATGTGTCTAACTATCGGGCTCCTAAGGACTCAGAA TGGATCATGTGTCTAACTATGGGGCTCCTAAGGACTCAGAA Direct Gain 0 0.917561633748487 NA NA prediction 0.835123267496975 Functional Gain - RBMX2 ENSG00000134597 CDS Human protein_coding chrX:129545364 chrX:129545364 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42213 0 0 1 0 1 RBMX2 chrX:129545322 3'AG 129545322 Downstream 43bp 38807 chr1 155255678 155255678 1 + T G LUSC 155255678 + 155255658 155255698 41 CGTGGGGAGGAAGATGTACTTCATCCAGCATGGGCTGCTCA CGTGGGGAGGAAGATGTACTGCATCCAGCATGGGCTGCTCA Direct Gain 0 0.917548562252449 NA NA prediction 0.835097124504898 Functional Gain - HCN3 ENSG00000143630 CDS Human protein_coding chr1:155255678 chr1:155255678 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42215 0 0 1 0 1 HCN3 chr1:155255755 5'GT 155255755 Upstream 78bp 38808 chr8 56715028 56715028 1 + A G UCEC 56715028 + 56715008 56715048 41 TATTTTAGCTGAAGTGAAAAAGAAGAAGAACAAGAAGAAGA TATTTTAGCTGAAGTGAAAAGGAAGAAGAACAAGAAGAAGA Direct Gain 0 0.917535313174525 NA NA prediction 0.83507062634905 Functional Gain - TGS1 ENSG00000137574 CDS Human protein_coding chr8:56715028 chr8:56715028 nonsynonymous SNV 0.989 0 21 hm7G_associated_SNPs_42216 0 0 1 0 1 TGS1 chr8:56715016 3'AG 56715016 Downstream 13bp 38809 chr12 7031509 7031509 1 + C G BLCA 7031509 + 7031489 7031529 41 TCCTTTGAAATGTTTCAGATCAAGACTGGTGCCCCGTGCCG TCCTTTGAAATGTTTCAGATGAAGACTGGTGCCCCGTGCCG Direct Gain 0 0.917533624677185 NA NA prediction 0.835067249354369 Functional Gain - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7031509 chr12:7031509 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42217 0 0 1 0 2 ENO2 chr12:7031507 3'AG 7031507 Downstream 3bp 38810 chr12 7031509 7031509 1 + C G BLCA 7031509 + 7031489 7031529 41 TCCTTTGAAATGTTTCAGATCAAGACTGGTGCCCCGTGCCG TCCTTTGAAATGTTTCAGATGAAGACTGGTGCCCCGTGCCG Direct Gain 0 0.917533624677185 NA NA prediction 0.835067249354369 Functional Gain - ENO2 ENSG00000111674 CDS Human protein_coding chr12:7031509 chr12:7031509 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42217 0 0 1 0 2 ENO2 chr12:7031565 5'GT 7031565 Upstream 57bp 38811 chr20 13098238 13098238 1 + A G UCEC 13098238 + 13098218 13098258 41 TCTACATAGATGAAGCTCACAGTATTGGGGCCGTGGGCCCA TCTACATAGATGAAGCTCACGGTATTGGGGCCGTGGGCCCA Direct Gain 0 0.917527905061742 NA NA prediction 0.835055810123485 Functional Gain - SPTLC3 ENSG00000172296 CDS Human protein_coding chr20:13098238 chr20:13098238 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42218 0 0 1 0 1 SPTLC3 chr20:13098153 3'AG 13098153 Downstream 86bp 38812 chr19 45303662 45303662 1 + C G BRCA 45303662 + 45303642 45303682 41 TCCTAAAGGGGAACTCCCCTCCAGCTGCGCTGGGACCCCAG TCCTAAAGGGGAACTCCCCTGCAGCTGCGCTGGGACCCCAG Direct Gain 0 0.917514151728957 NA NA prediction 0.835028303457914 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303662 chr19:45303662 nonsynonymous SNV 0.007 1 21 hm7G_associated_SNPs_42221 0 0 0 0 2 CBLC chr19:45303638 3'AG 45303638 Downstream 25bp 38813 chr19 45303662 45303662 1 + C G BRCA 45303662 + 45303642 45303682 41 TCCTAAAGGGGAACTCCCCTCCAGCTGCGCTGGGACCCCAG TCCTAAAGGGGAACTCCCCTGCAGCTGCGCTGGGACCCCAG Direct Gain 0 0.917514151728957 NA NA prediction 0.835028303457914 Functional Gain - CBLC ENSG00000142273 CDS Human protein_coding chr19:45303662 chr19:45303662 nonsynonymous SNV 0.007 1 21 hm7G_associated_SNPs_42221 0 0 0 0 2 CBLC chr19:45303707 5'GT 45303707 Upstream 46bp 38814 chr19 58904783 58904783 1 + A G BRCA 58904783 + 58904763 58904803 41 GTGGTCCCCGGGAGGACTCCACACGCATTGGGCGCGCCGGG GTGGTCCCCGGGAGGACTCCGCACGCATTGGGCGCGCCGGG Direct Gain 0 0.917500325588041 NA NA prediction 0.835000651176082 Functional Gain - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904783 chr19:58904783 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_42225 0 0 1 0 2 RPS5 chr19:58904726 3'AG 58904726 Downstream 58bp 38815 chr19 58904783 58904783 1 + A G BRCA 58904783 + 58904763 58904803 41 GTGGTCCCCGGGAGGACTCCACACGCATTGGGCGCGCCGGG GTGGTCCCCGGGAGGACTCCGCACGCATTGGGCGCGCCGGG Direct Gain 0 0.917500325588041 NA NA prediction 0.835000651176082 Functional Gain - RPS5 ENSG00000083845 CDS Human protein_coding chr19:58904783 chr19:58904783 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_42225 0 0 1 0 2 RPS5 chr19:58904854 5'GT 58904854 Upstream 72bp 38816 chr12 13366700 13366700 1 + C G CESC 13366700 + 13366680 13366720 41 GTCTTCGTGTTCCAGCTCTTCACCATGGAGAAGGGAAACCG GTCTTCGTGTTCCAGCTCTTGACCATGGAGAAGGGAAACCG Direct Gain 0 0.917499529515334 NA NA prediction 0.834999059030669 Functional Gain - EMP1 ENSG00000134531 CDS Human protein_coding chr12:13366700 chr12:13366700 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42226 0 0 1 0 2 EMP1 chr12:13366615 3'AG 13366615 Downstream 86bp 38817 chr12 13366700 13366700 1 + C G CESC 13366700 + 13366680 13366720 41 GTCTTCGTGTTCCAGCTCTTCACCATGGAGAAGGGAAACCG GTCTTCGTGTTCCAGCTCTTGACCATGGAGAAGGGAAACCG Direct Gain 0 0.917499529515334 NA NA prediction 0.834999059030669 Functional Gain - EMP1 ENSG00000134531 CDS Human protein_coding chr12:13366700 chr12:13366700 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42226 0 0 1 0 2 EMP1 chr12:13366755 5'GT 13366755 Upstream 56bp 38818 chr16 8738579 8738579 1 + A G rs1641067 8738579 + 8738559 8738599 41 GTTTACGAGCGCCTCCAGCAACTGGTAGGTCCAGGCCCCGA GTTTACGAGCGCCTCCAGCAGCTGGTAGGTCCAGGCCCCGA Direct Gain 0 0.917495713657151 NA NA prediction 0.834991427314302 Functional Gain - METTL22 ENSG00000067365 CDS Human protein_coding chr16:8738579 chr16:8738579 synonymous SNV . 0 21 hm7G_associated_SNPs_42227 0 0 1 0 1 METTL22 chr16:8738582 5'GT 8738582 Upstream 4bp 38819 chr16 85954755 85954755 1 + A G COAD 85954755 + 85954735 85954775 41 ACTGGCAGAAGAGGCTGGGAAGAGCTGTGGAGCCGGCTCTG ACTGGCAGAAGAGGCTGGGAGGAGCTGTGGAGCCGGCTCTG Direct Gain 0 0.917493184395773 NA NA prediction 0.834986368791546 Functional Gain - IRF8 ENSG00000140968 CDS Human protein_coding chr16:85954755 chr16:85954755 nonsynonymous SNV 0.896 2 21 hm7G_associated_SNPs_42229 0 0 0 0 1 IRF8 chr16:85954712 3'AG 85954712 Downstream 44bp 38820 chr6 127911248 127911248 1 + A G STAD 127911248 + 127911228 127911268 41 TTAGATATGATTATTATTCTAAAGCAGAAGCGCATTTTGAG TTAGATATGATTATTATTCTGAAGCAGAAGCGCATTTTGAG Direct Gain 0 0.917483938551761 NA NA prediction 0.834967877103523 Functional Gain - C6orf58 ENSG00000184530 CDS Human protein_coding chr6:127911248 chr6:127911248 nonsynonymous SNV 0.608 0 21 hm7G_associated_SNPs_42230 0 0 0 0 1 C6orf58 chr6:127911232 3'AG 127911232 Downstream 17bp 38821 chr22 42059649 42059649 1 + A G TGCT 42059649 + 42059629 42059669 41 ATGAAGGTTCTGGAAGCAAAAGGCCCAAGGTGGAGTATTCA ATGAAGGTTCTGGAAGCAAAGGGCCCAAGGTGGAGTATTCA Direct Gain 0 0.917480118183954 NA NA prediction 0.834960236367909 Functional Gain - XRCC6 ENSG00000196419 CDS Human protein_coding chr22:42059649 chr22:42059649 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42231 0 0 1 0 1 XRCC6 chr22:42059626 3'AG 42059626 Downstream 24bp 38822 chr19 7594522 7594522 1 + T G UCEC 7594522 + 7594502 7594542 41 CCTGCCCAGCGTCATGCGCTTCTGCTGCTGCGTGGCTGTCA CCTGCCCAGCGTCATGCGCTGCTGCTGCTGCGTGGCTGTCA Direct Gain 0 0.917466380918486 NA NA prediction 0.834932761836971 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7594522 chr19:7594522 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42233 0 0 1 0 2 MCOLN1 chr19:7594476 3'AG 7594476 Downstream 47bp 38823 chr19 7594522 7594522 1 + T G UCEC 7594522 + 7594502 7594542 41 CCTGCCCAGCGTCATGCGCTTCTGCTGCTGCGTGGCTGTCA CCTGCCCAGCGTCATGCGCTGCTGCTGCTGCGTGGCTGTCA Direct Gain 0 0.917466380918486 NA NA prediction 0.834932761836971 Functional Gain - MCOLN1 ENSG00000090674 CDS Human protein_coding chr19:7594522 chr19:7594522 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42233 0 0 1 0 2 MCOLN1 chr19:7594598 5'GT 7594598 Upstream 77bp 38824 chr1 43917505 43917505 1 - T C STAD 43917505 - 43917485 43917525 41 CTTACAGCGGCAGCCATCTTACAGAAGGTAGGAAGACCCAA CTTACAGCGGCAGCCATCTTGCAGAAGGTAGGAAGACCCAA Direct Gain 0 0.917439090129577 NA NA prediction 0.834878180259153 Functional Gain - HYI ENSG00000178922 CDS Human protein_coding chr1:43917505 chr1:43917505 synonymous SNV . 0 21 hm7G_associated_SNPs_42235 0 0 1 0 2 HYI chr1:43917469 5'GT 43917469 Upstream 37bp 38825 chr1 43917505 43917505 1 - T C STAD 43917505 - 43917485 43917525 41 CTTACAGCGGCAGCCATCTTACAGAAGGTAGGAAGACCCAA CTTACAGCGGCAGCCATCTTGCAGAAGGTAGGAAGACCCAA Direct Gain 0 0.917439090129577 NA NA prediction 0.834878180259153 Functional Gain - HYI ENSG00000178922 CDS Human protein_coding chr1:43917505 chr1:43917505 synonymous SNV . 0 21 hm7G_associated_SNPs_42235 0 0 1 0 2 HYI chr1:43917518 3'AG 43917518 Downstream 14bp 38826 chr2 88402583 88402583 1 + C G LUSC 88402583 + 88402563 88402603 41 TCTCTCTTTCCCAGCCCTCTCAGGAAGTGGTGAAGGAGATG TCTCTCTTTCCCAGCCCTCTGAGGAAGTGGTGAAGGAGATG Direct Gain 0 0.917433405159106 NA NA prediction 0.834866810318212 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88402583 chr2:88402583 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_42236 0 0 0 0 2 SMYD1 chr2:88402577 3'AG 88402577 Downstream 7bp 38827 chr2 88402583 88402583 1 + C G LUSC 88402583 + 88402563 88402603 41 TCTCTCTTTCCCAGCCCTCTCAGGAAGTGGTGAAGGAGATG TCTCTCTTTCCCAGCCCTCTGAGGAAGTGGTGAAGGAGATG Direct Gain 0 0.917433405159106 NA NA prediction 0.834866810318212 Functional Gain - SMYD1 ENSG00000115593 CDS Human protein_coding chr2:88402583 chr2:88402583 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_42236 0 0 0 0 2 SMYD1 chr2:88402669 5'GT 88402669 Upstream 87bp 38828 chr19 5664419 5664419 1 + C G HNSC 5664419 + 5664399 5664439 41 CCTTTTCAGGAGAGAAGGTTCAAGGTCAATGATGGGAGAAC CCTTTTCAGGAGAGAAGGTTGAAGGTCAATGATGGGAGAAC Direct Gain 0 0.91742837622402 NA NA prediction 0.834856752448041 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5664419 chr19:5664419 stopgain 0.994 1 21 hm7G_associated_SNPs_42237 0 0 1 0 2 SAFB chr19:5664408 3'AG 5664408 Downstream 12bp 38829 chr19 5664419 5664419 1 + C G HNSC 5664419 + 5664399 5664439 41 CCTTTTCAGGAGAGAAGGTTCAAGGTCAATGATGGGAGAAC CCTTTTCAGGAGAGAAGGTTGAAGGTCAATGATGGGAGAAC Direct Gain 0 0.91742837622402 NA NA prediction 0.834856752448041 Functional Gain - SAFB ENSG00000160633 CDS Human protein_coding chr19:5664419 chr19:5664419 stopgain 0.994 1 21 hm7G_associated_SNPs_42237 0 0 1 0 2 SAFB chr19:5664450 5'GT 5664450 Upstream 32bp 38830 chr1 220936278 220936278 1 + C G BLCA 220936278 + 220936258 220936298 41 TACCCAGACTACTGCCCGCTCCTGATCATGACAGATGCCTC TACCCAGACTACTGCCCGCTGCTGATCATGACAGATGCCTC Direct Gain 0 0.917411671691072 NA NA prediction 0.834823343382145 Functional Gain - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220936278 chr1:220936278 synonymous SNV . 0 21 hm7G_associated_SNPs_42241 0 0 1 0 1 MARC2 chr1:220936252 3'AG 220936252 Downstream 27bp 38831 chr5 159854773 159854773 1 + T G SARC 159854773 + 159854753 159854793 41 CCAGATTGCGCACCTCCCCTTGAGTGGAGTGCCTCTCATGA CCAGATTGCGCACCTCCCCTGGAGTGGAGTGCCTCTCATGA Direct Gain 0 0.917403047129948 NA NA prediction 0.834806094259896 Functional Gain - PTTG1 ENSG00000164611 CDS Human protein_coding chr5:159854773 chr5:159854773 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_42242 0 0 1 0 1 PTTG1 chr5:159854722 3'AG 159854722 Downstream 52bp 38832 chr12 8671683 8671683 1 + C G rs774176768 8671683 + 8671663 8671703 41 TCCTCTTACTGACAACAAGACGTGGGCTGAGAGTGAAAGGA TCCTCTTACTGACAACAAGAGGTGGGCTGAGAGTGAAAGGA Direct Gain 0 0.917398592837787 NA NA prediction 0.834797185675574 Functional Gain - CLEC4D ENSG00000166527 CDS Human protein_coding chr12:8671683 chr12:8671683 nonsynonymous SNV 0.004 3 21 hm7G_associated_SNPs_42243 0 0 0 0 2 CLEC4D chr12:8671605 3'AG 8671605 Downstream 79bp 38833 chr12 8671683 8671683 1 + C G rs774176768 8671683 + 8671663 8671703 41 TCCTCTTACTGACAACAAGACGTGGGCTGAGAGTGAAAGGA TCCTCTTACTGACAACAAGAGGTGGGCTGAGAGTGAAAGGA Direct Gain 0 0.917398592837787 NA NA prediction 0.834797185675574 Functional Gain - CLEC4D ENSG00000166527 CDS Human protein_coding chr12:8671683 chr12:8671683 nonsynonymous SNV 0.004 3 21 hm7G_associated_SNPs_42243 0 0 0 0 2 CLEC4D chr12:8671756 5'GT 8671756 Upstream 74bp 38834 chr10 102300481 102300481 1 + A G UCEC 102300481 + 102300461 102300501 41 TGGAACTGGATTAATAAGCAACAGGGAAAGCGTGGCTGGGG TGGAACTGGATTAATAAGCAGCAGGGAAAGCGTGGCTGGGG Direct Gain 0 0.917398582663214 NA NA prediction 0.834797165326429 Functional Gain - HIF1AN ENSG00000166135 CDS Human protein_coding chr10:102300481 chr10:102300481 synonymous SNV . 0 21 hm7G_associated_SNPs_42244 0 0 1 0 2 HIF1AN chr10:102300391 3'AG 102300391 Downstream 91bp 38835 chr10 102300481 102300481 1 + A G UCEC 102300481 + 102300461 102300501 41 TGGAACTGGATTAATAAGCAACAGGGAAAGCGTGGCTGGGG TGGAACTGGATTAATAAGCAGCAGGGAAAGCGTGGCTGGGG Direct Gain 0 0.917398582663214 NA NA prediction 0.834797165326429 Functional Gain - HIF1AN ENSG00000166135 CDS Human protein_coding chr10:102300481 chr10:102300481 synonymous SNV . 0 21 hm7G_associated_SNPs_42244 0 0 1 0 2 HIF1AN chr10:102300539 5'GT 102300539 Upstream 59bp 38836 chr4 110739145 110739145 1 + A G CESC 110739145 + 110739125 110739165 41 ACATAGTTTGTAAATGTACCACAGATGAAAATAAGGTGCCT ACATAGTTTGTAAATGTACCGCAGATGAAAATAAGGTGCCT Direct Gain 0 0.917398040825731 NA NA prediction 0.834796081651462 Functional Gain - GAR1 ENSG00000109534 CDS Human protein_coding chr4:110739145 chr4:110739145 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_42245 0 0 1 0 1 GAR1 chr4:110739092 3'AG 110739092 Downstream 54bp 38837 chr19 47653554 47653554 1 + C G BLCA 47653554 + 47653534 47653574 41 TTGGAGCGAGCTCAGAATCTCAACCCCATGGTGGATGTGAA TTGGAGCGAGCTCAGAATCTGAACCCCATGGTGGATGTGAA Direct Gain 0 0.917398009648771 NA NA prediction 0.834796019297541 Functional Gain - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47653554 chr19:47653554 synonymous SNV . 0 21 hm7G_associated_SNPs_42246 0 0 1 0 2 SAE1 chr19:47653459 3'AG 47653459 Downstream 96bp 38838 chr19 47653554 47653554 1 + C G BLCA 47653554 + 47653534 47653574 41 TTGGAGCGAGCTCAGAATCTCAACCCCATGGTGGATGTGAA TTGGAGCGAGCTCAGAATCTGAACCCCATGGTGGATGTGAA Direct Gain 0 0.917398009648771 NA NA prediction 0.834796019297541 Functional Gain - SAE1 ENSG00000142230 CDS Human protein_coding chr19:47653554 chr19:47653554 synonymous SNV . 0 21 hm7G_associated_SNPs_42246 0 0 1 0 2 SAE1 chr19:47653632 5'GT 47653632 Upstream 79bp 38839 chr2 211469849 211469849 1 + T G UCEC 211469849 + 211469829 211469869 41 TTTGCTATGACCAACCAAATTCTGGTGGAGAAGTCAGTGAC TTTGCTATGACCAACCAAATGCTGGTGGAGAAGTCAGTGAC Direct Gain 0 0.917397945063183 NA NA prediction 0.834795890126365 Functional Gain - CPS1 ENSG00000021826 CDS Human protein_coding chr2:211469849 chr2:211469849 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42247 0 0 1 0 1 CPS1 chr2:211469826 3'AG 211469826 Downstream 24bp 38840 chr2 233323582 233323582 1 + A G UCEC 233323582 + 233323562 233323602 41 CCTACCAGGGAGCCCCGATTACCAGCAGCAGGCGGCGGTGC CCTACCAGGGAGCCCCGATTGCCAGCAGCAGGCGGCGGTGC Direct Gain 0 0.917395041498758 NA NA prediction 0.834790082997515 Functional Gain - ALPI ENSG00000163295 CDS Human protein_coding chr2:233323582 chr2:233323582 nonsynonymous SNV 0.022 5 21 hm7G_associated_SNPs_42249 0 0 0 0 1 ALPI chr2:233323570 3'AG 233323570 Downstream 13bp 38841 chr20 54972890 54972890 1 + A G UCEC 54972890 + 54972870 54972910 41 AGCAAAAAGAGCCTTCAAATACATTCAGGTAGGAATCTTTA AGCAAAAAGAGCCTTCAAATGCATTCAGGTAGGAATCTTTA Direct Gain 0 0.917392867684009 NA NA prediction 0.834785735368019 Functional Gain - CSTF1 ENSG00000101138 CDS Human protein_coding chr20:54972890 chr20:54972890 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42250 0 0 1 0 1 CSTF1 chr20:54972897 5'GT 54972897 Upstream 8bp 38842 chr19 12864126 12864126 1 + T G LUAD 12864126 + 12864106 12864146 41 TCGAGAAGCTTGTGATTTATTGTGACCAGTATGCCAGCCTC TCGAGAAGCTTGTGATTTATGGTGACCAGTATGCCAGCCTC Direct Gain 0 0.917382984120449 NA NA prediction 0.834765968240897 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12864126 chr19:12864126 nonsynonymous SNV 0.996 5 21 hm7G_associated_SNPs_42251 0 0 0 0 2 BEST2 chr19:12864074 3'AG 12864074 Downstream 53bp 38843 chr19 12864126 12864126 1 + T G LUAD 12864126 + 12864106 12864146 41 TCGAGAAGCTTGTGATTTATTGTGACCAGTATGCCAGCCTC TCGAGAAGCTTGTGATTTATGGTGACCAGTATGCCAGCCTC Direct Gain 0 0.917382984120449 NA NA prediction 0.834765968240897 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12864126 chr19:12864126 nonsynonymous SNV 0.996 5 21 hm7G_associated_SNPs_42251 0 0 0 0 2 BEST2 chr19:12864168 5'GT 12864168 Upstream 43bp 38844 chr5 132409801 132409801 1 + A G UCEC 132409801 + 132409781 132409821 41 AAGTTTCTGTATGTGCATTTAATAGAGGAAAACTGAAAGTA AAGTTTCTGTATGTGCATTTGATAGAGGAAAACTGAAAGTA Direct Gain 0 0.91737220633418 NA NA prediction 0.834744412668359 Functional Gain - HSPA4 ENSG00000170606 CDS Human protein_coding chr5:132409801 chr5:132409801 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42253 0 0 1 0 1 HSPA4 chr5:132409818 5'GT 132409818 Upstream 18bp 38845 chr2 105665762 105665762 1 + A G GBM 105665762 + 105665742 105665782 41 AGGAAAGAGACATTTAGCCAACATGATGGGAGAAGATCCAG AGGAAAGAGACATTTAGCCAGCATGATGGGAGAAGATCCAG Direct Gain 0 0.917362480723528 NA NA prediction 0.834724961447055 Functional Gain - MRPS9 ENSG00000135972 CDS Human protein_coding chr2:105665762 chr2:105665762 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42254 0 0 1 0 1 MRPS9 chr2:105665808 5'GT 105665808 Upstream 47bp 38846 chr2 172951530 172951530 1 + T G LUSC 172951530 + 172951510 172951550 41 CAGCAAACTCAGTACCTAGCTCTGCCGGAGAGGGCGGAGCT CAGCAAACTCAGTACCTAGCGCTGCCGGAGAGGGCGGAGCT Direct Gain 0 0.917345737562216 NA NA prediction 0.834691475124432 Functional Gain - DLX1 ENSG00000144355 CDS Human protein_coding chr2:172951530 chr2:172951530 synonymous SNV . 0 21 hm7G_associated_SNPs_42256 0 0 1 0 1 DLX1 chr2:172951581 5'GT 172951581 Upstream 52bp 38847 chr1 185014741 185014741 1 + C G rs531474381 185014741 + 185014721 185014761 41 GCTGATACCAGAGTCTTGCTCCGGCCGCGGCCAGCGGAGCC GCTGATACCAGAGTCTTGCTGCGGCCGCGGCCAGCGGAGCC Direct Gain 0 0.917338775300378 NA NA prediction 0.834677550600756 Functional Gain - RNF2 ENSG00000121481 UTR5 Human protein_coding chr1:185014741 chr1:185014741 . . 0 21 hm7G_associated_SNPs_42258 0 0 1 0 1 RNF2 chr1:185014781 5'GT 185014781 Upstream 41bp 38848 chr6 146865208 146865208 1 + C G BLCA 146865208 + 146865188 146865228 41 GACTTCGCCCTCAAGGTCCTCAACTGGGACAGCAGGACTCT GACTTCGCCCTCAAGGTCCTGAACTGGGACAGCAGGACTCT Direct Gain 0 0.917337762890943 NA NA prediction 0.834675525781886 Functional Gain - RAB32 ENSG00000118508 CDS Human protein_coding chr6:146865208 chr6:146865208 synonymous SNV . 0 21 hm7G_associated_SNPs_42259 0 0 1 0 1 RAB32 chr6:146865257 5'GT 146865257 Upstream 50bp 38849 chr12 3701456 3701456 1 + A G LIHC 3701456 + 3701436 3701476 41 TCTACTTGGAAGATTACCTCACTGTCCGGAGGGGGGAGGAA TCTACTTGGAAGATTACCTCGCTGTCCGGAGGGGGGAGGAA Direct Gain 0 0.91729963586403 NA NA prediction 0.83459927172806 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701456 chr12:3701456 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42262 0 0 0 0 2 PRMT8 chr12:3701397 3'AG 3701397 Downstream 60bp 38850 chr12 3701456 3701456 1 + A G LIHC 3701456 + 3701436 3701476 41 TCTACTTGGAAGATTACCTCACTGTCCGGAGGGGGGAGGAA TCTACTTGGAAGATTACCTCGCTGTCCGGAGGGGGGAGGAA Direct Gain 0 0.91729963586403 NA NA prediction 0.83459927172806 Functional Gain - PRMT8 ENSG00000111218 CDS Human protein_coding chr12:3701456 chr12:3701456 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42262 0 0 0 0 2 PRMT8 chr12:3701518 5'GT 3701518 Upstream 63bp 38851 chr19 12866521 12866521 1 + A G STAD 12866521 + 12866501 12866541 41 GGTTACAAAGACCACGACCTAGACCTGTGTGTGCCCATCTT GGTTACAAAGACCACGACCTGGACCTGTGTGTGCCCATCTT Direct Gain 0 0.917297859955737 NA NA prediction 0.834595719911474 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12866521 chr19:12866521 synonymous SNV . 0 21 hm7G_associated_SNPs_42263 0 0 0 0 2 BEST2 chr19:12866429 3'AG 12866429 Downstream 93bp 38852 chr19 12866521 12866521 1 + A G STAD 12866521 + 12866501 12866541 41 GGTTACAAAGACCACGACCTAGACCTGTGTGTGCCCATCTT GGTTACAAAGACCACGACCTGGACCTGTGTGTGCCCATCTT Direct Gain 0 0.917297859955737 NA NA prediction 0.834595719911474 Functional Gain - BEST2 ENSG00000039987 CDS Human protein_coding chr19:12866521 chr19:12866521 synonymous SNV . 0 21 hm7G_associated_SNPs_42263 0 0 0 0 2 BEST2 chr19:12866581 5'GT 12866581 Upstream 61bp 38853 chr2 27891735 27891735 1 + T G BLCA 27891735 + 27891715 27891755 41 GAATTAGAATATGAATTTGATGAACAGGGACATAGCACTTG GAATTAGAATATGAATTTGAGGAACAGGGACATAGCACTTG Direct Gain 0 0.917296154410182 NA NA prediction 0.834592308820365 Functional Gain - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27891735 chr2:27891735 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42264 0 0 1 0 2 SLC4A1AP chr2:27891710 3'AG 27891710 Downstream 26bp 38854 chr2 27891735 27891735 1 + T G BLCA 27891735 + 27891715 27891755 41 GAATTAGAATATGAATTTGATGAACAGGGACATAGCACTTG GAATTAGAATATGAATTTGAGGAACAGGGACATAGCACTTG Direct Gain 0 0.917296154410182 NA NA prediction 0.834592308820365 Functional Gain - SLC4A1AP ENSG00000163798 CDS Human protein_coding chr2:27891735 chr2:27891735 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42264 0 0 1 0 2 SLC4A1AP chr2:27891770 5'GT 27891770 Upstream 36bp 38855 chr17 38127789 38127789 1 + C G LUAD 38127789 + 38127769 38127809 41 AATTCTAGGGATCCATAAATCACAAGGAGGCTGTAACCATC AATTCTAGGGATCCATAAATGACAAGGAGGCTGTAACCATC Direct Gain 0 0.917287356475587 NA NA prediction 0.834574712951174 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38127789 chr17:38127789 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_42266 0 0 0 0 2 GSDMA chr17:38127777 3'AG 38127777 Downstream 13bp 38856 chr17 38127789 38127789 1 + C G LUAD 38127789 + 38127769 38127809 41 AATTCTAGGGATCCATAAATCACAAGGAGGCTGTAACCATC AATTCTAGGGATCCATAAATGACAAGGAGGCTGTAACCATC Direct Gain 0 0.917287356475587 NA NA prediction 0.834574712951174 Functional Gain - GSDMA ENSG00000167914 CDS Human protein_coding chr17:38127789 chr17:38127789 nonsynonymous SNV 0.996 0 21 hm7G_associated_SNPs_42266 0 0 0 0 2 GSDMA chr17:38127873 5'GT 38127873 Upstream 85bp 38857 chr7 150557612 150557612 1 + A G UCEC 150557612 + 150557592 150557632 41 CCCCCTGGCAGTGACCAAGTACCGGGAGTCGGAGCTGTGCA CCCCCTGGCAGTGACCAAGTGCCGGGAGTCGGAGCTGTGCA Direct Gain 0 0.917248282329166 NA NA prediction 0.834496564658332 Functional Gain - AOC1 ENSG00000002726 CDS Human protein_coding chr7:150557612 chr7:150557612 nonsynonymous SNV 0.983 3 21 hm7G_associated_SNPs_42268 0 0 0 0 2 AOC1 chr7:150557532 3'AG 150557532 Downstream 81bp 38858 chr7 150557612 150557612 1 + A G UCEC 150557612 + 150557592 150557632 41 CCCCCTGGCAGTGACCAAGTACCGGGAGTCGGAGCTGTGCA CCCCCTGGCAGTGACCAAGTGCCGGGAGTCGGAGCTGTGCA Direct Gain 0 0.917248282329166 NA NA prediction 0.834496564658332 Functional Gain - AOC1 ENSG00000002726 CDS Human protein_coding chr7:150557612 chr7:150557612 nonsynonymous SNV 0.983 3 21 hm7G_associated_SNPs_42268 0 0 0 0 2 AOC1 chr7:150557589 3'AG 150557589 Downstream 24bp 38859 chr17 40818472 40818472 1 + C G BLCA 40818472 + 40818452 40818492 41 GCCCACCGGGTCAGCGGGCTCATGATGGCCAACCACACCAG GCCCACCGGGTCAGCGGGCTGATGATGGCCAACCACACCAG Direct Gain 0 0.917248204318636 NA NA prediction 0.834496408637273 Functional Gain - TUBG2 ENSG00000037042 CDS Human protein_coding chr17:40818472 chr17:40818472 synonymous SNV . 0 21 hm7G_associated_SNPs_42269 0 0 0 0 1 TUBG2 chr17:40818502 5'GT 40818502 Upstream 31bp 38860 chr21 45535786 45535786 1 + A G UCEC 45535786 + 45535766 45535806 41 GAAGACAGGAAAAGTGAAGTACTCACGGCTGGCCAAGTAGG GAAGACAGGAAAAGTGAAGTGCTCACGGCTGGCCAAGTAGG Direct Gain 0 0.917223350565208 NA NA prediction 0.834446701130416 Functional Gain - PWP2 ENSG00000241945 CDS Human protein_coding chr21:45535786 chr21:45535786 nonsynonymous SNV 0.989 4 21 hm7G_associated_SNPs_42272 0 0 0 0 1 PWP2 chr21:45535801 5'GT 45535801 Upstream 16bp 38861 chr17 63198172 63198172 1 + C G CESC 63198172 + 63198152 63198192 41 TATGGAGATCAGTCCAAAGTCAAGGAGAAAGCAGAGGAGAT TATGGAGATCAGTCCAAAGTGAAGGAGAAAGCAGAGGAGAT Direct Gain 0 0.917213221130771 NA NA prediction 0.834426442261542 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63198172 chr17:63198172 synonymous SNV . 0 21 hm7G_associated_SNPs_42273 0 0 0 0 2 RGS9 chr17:63198111 3'AG 63198111 Downstream 62bp 38862 chr17 63198172 63198172 1 + C G CESC 63198172 + 63198152 63198192 41 TATGGAGATCAGTCCAAAGTCAAGGAGAAAGCAGAGGAGAT TATGGAGATCAGTCCAAAGTGAAGGAGAAAGCAGAGGAGAT Direct Gain 0 0.917213221130771 NA NA prediction 0.834426442261542 Functional Gain - RGS9 ENSG00000108370 CDS Human protein_coding chr17:63198172 chr17:63198172 synonymous SNV . 0 21 hm7G_associated_SNPs_42273 0 0 0 0 2 RGS9 chr17:63198198 5'GT 63198198 Upstream 27bp 38863 chr5 139742562 139742562 1 + C G OV 139742562 + 139742542 139742582 41 CTGGCAGCCCTGGATGCATTCCTAGAGGAGGTGACAGTGCT CTGGCAGCCCTGGATGCATTGCTAGAGGAGGTGACAGTGCT Direct Gain 0 0.917170664538709 NA NA prediction 0.834341329077419 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139742562 chr5:139742562 nonsynonymous SNV 0.970 4 21 hm7G_associated_SNPs_42277 0 0 0 0 2 SLC4A9 chr5:139742497 3'AG 139742497 Downstream 66bp 38864 chr5 139742562 139742562 1 + C G OV 139742562 + 139742542 139742582 41 CTGGCAGCCCTGGATGCATTCCTAGAGGAGGTGACAGTGCT CTGGCAGCCCTGGATGCATTGCTAGAGGAGGTGACAGTGCT Direct Gain 0 0.917170664538709 NA NA prediction 0.834341329077419 Functional Gain - SLC4A9 ENSG00000113073 CDS Human protein_coding chr5:139742562 chr5:139742562 nonsynonymous SNV 0.970 4 21 hm7G_associated_SNPs_42277 0 0 0 0 2 SLC4A9 chr5:139742651 5'GT 139742651 Upstream 90bp 38865 chr12 53700043 53700043 1 + A G COAD 53700043 + 53700023 53700063 41 TCTGCAGAGATTAGATTTCTACCAACACAGCTGGCTGCCAG TCTGCAGAGATTAGATTTCTGCCAACACAGCTGGCTGCCAG Direct Gain 0 0.91716703367654 NA NA prediction 0.834334067353079 Functional Gain - C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700043 chr12:53700043 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42278 0 0 1 0 2 C12orf10 chr12:53699982 3'AG 53699982 Downstream 62bp 38866 chr12 53700043 53700043 1 + A G COAD 53700043 + 53700023 53700063 41 TCTGCAGAGATTAGATTTCTACCAACACAGCTGGCTGCCAG TCTGCAGAGATTAGATTTCTGCCAACACAGCTGGCTGCCAG Direct Gain 0 0.91716703367654 NA NA prediction 0.834334067353079 Functional Gain - C12orf10 ENSG00000139637 CDS Human protein_coding chr12:53700043 chr12:53700043 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42278 0 0 1 0 2 C12orf10 chr12:53700104 5'GT 53700104 Upstream 62bp 38867 chr6 133135884 133135884 1 + C G rs542049814 133135884 + 133135864 133135904 41 TTTTTAGTGCGTTCAAGATTCAACTTCACCCGTAACCCACC TTTTTAGTGCGTTCAAGATTGAACTTCACCCGTAACCCACC Direct Gain 0 0.917162641911077 NA NA prediction 0.834325283822154 Functional Gain - RPS12 ENSG00000112306 UTR5 Human protein_coding chr6:133135884 chr6:133135884 . . 0 21 hm7G_associated_SNPs_42279 0 0 1 0 1 RPS12 chr6:133135871 3'AG 133135871 Downstream 14bp 38868 chr1 150981120 150981120 1 + C G BLCA 150981120 + 150981100 150981140 41 GGCTTCATCATGGAGGACTACCTGCAGGGTTGTCGAGCTGC GGCTTCATCATGGAGGACTAGCTGCAGGGTTGTCGAGCTGC Direct Gain 0 0.917157872970661 NA NA prediction 0.834315745941322 Functional Gain - PRUNE1 ENSG00000143363 CDS Human protein_coding chr1:150981120 chr1:150981120 stopgain 1.000 1 21 hm7G_associated_SNPs_42280 0 0 1 0 1 PRUNE1 chr1:150981147 5'GT 150981147 Upstream 28bp 38869 chrX 70830565 70830565 1 + A G UCEC 70830565 + 70830545 70830585 41 ACGCATAGGCTGGAATAACAAGATGGTGAAAACTGCTGGCT ACGCATAGGCTGGAATAACAGGATGGTGAAAACTGCTGGCT Direct Gain 0 0.917155652697078 NA NA prediction 0.834311305394156 Functional Gain - GCNA ENSG00000147174 CDS Human protein_coding chrX:70830565 chrX:70830565 nonsynonymous SNV 0.957 1 21 hm7G_associated_SNPs_42281 0 0 0 0 1 GCNA chrX:70830531 3'AG 70830531 Downstream 35bp 38870 chr16 57719746 57719746 1 + C G BLCA 57719746 + 57719726 57719766 41 GCTCACCCTGCTGGGCCTCTCGAGCCTGGTGGGTGTGACAT GCTCACCCTGCTGGGCCTCTGGAGCCTGGTGGGTGTGACAT Direct Gain 0 0.917155346024276 NA NA prediction 0.834310692048552 Functional Gain - ADGRG3 ENSG00000182885 CDS Human protein_coding chr16:57719746 chr16:57719746 nonsynonymous SNV 0.936 3 21 hm7G_associated_SNPs_42282 0 0 0 0 1 ADGRG3 chr16:57719838 5'GT 57719838 Upstream 93bp 38871 chr20 58420272 58420272 1 + A G STAD 58420272 + 58420252 58420292 41 TCGTAAAGAATTAAATGAGTACAAAAGTAATGAAATGGAGG TCGTAAAGAATTAAATGAGTGCAAAAGTAATGAAATGGAGG Direct Gain 0 0.917143286128035 NA NA prediction 0.83428657225607 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58420272 chr20:58420272 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42283 0 0 0 0 2 PHACTR3 chr20:58420244 3'AG 58420244 Downstream 29bp 38872 chr20 58420272 58420272 1 + A G STAD 58420272 + 58420252 58420292 41 TCGTAAAGAATTAAATGAGTACAAAAGTAATGAAATGGAGG TCGTAAAGAATTAAATGAGTGCAAAAGTAATGAAATGGAGG Direct Gain 0 0.917143286128035 NA NA prediction 0.83428657225607 Functional Gain - PHACTR3 ENSG00000087495 CDS Human protein_coding chr20:58420272 chr20:58420272 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42283 0 0 0 0 2 PHACTR3 chr20:58420320 5'GT 58420320 Upstream 49bp 38873 chr1 201983128 201983128 1 + A G LUSC 201983128 + 201983108 201983148 41 AAAGAACAGCAACATGACCTACGAGAAGCTGAGCCGGGCCA AAAGAACAGCAACATGACCTGCGAGAAGCTGAGCCGGGCCA Direct Gain 0 0.917120659254297 NA NA prediction 0.834241318508594 Functional Gain - ELF3 ENSG00000163435 CDS Human protein_coding chr1:201983128 chr1:201983128 nonsynonymous SNV 0.971 4 21 hm7G_associated_SNPs_42285 0 0 0 0 1 ELF3 chr1:201983152 5'GT 201983152 Upstream 25bp 38874 chr3 140419735 140419735 1 + A G CESC 140419735 + 140419715 140419755 41 CGCTTCTGATTGCAGGTGGTAACACCAGATGGACATGGGAA CGCTTCTGATTGCAGGTGGTGACACCAGATGGACATGGGAA Direct Gain 0 0.917104661200195 NA NA prediction 0.834209322400389 Functional Gain - TRIM42 ENSG00000155890 CDS Human protein_coding chr3:140419735 chr3:140419735 synonymous SNV . 0 21 hm7G_associated_SNPs_42286 0 0 0 0 1 TRIM42 chr3:140419730 3'AG 140419730 Downstream 6bp 38875 chr13 31309784 31309784 1 + C G rs11542984 31309784 + 31309764 31309804 41 AATGTTGTCCTGTTGGCCATCGTCACCCTCATCAGCGTGGT AATGTTGTCCTGTTGGCCATGGTCACCCTCATCAGCGTGGT Direct Gain 0 0.917089658681053 NA NA prediction 0.834179317362105 Functional Gain - ALOX5AP ENSG00000132965 CDS Human protein_coding chr13:31309784 chr13:31309784 nonsynonymous SNV 0.882 1 21 hm7G_associated_SNPs_42289 0 0 0 0 2 ALOX5AP chr13:31309688 3'AG 31309688 Downstream 97bp 38876 chr13 31309784 31309784 1 + C G rs11542984 31309784 + 31309764 31309804 41 AATGTTGTCCTGTTGGCCATCGTCACCCTCATCAGCGTGGT AATGTTGTCCTGTTGGCCATGGTCACCCTCATCAGCGTGGT Direct Gain 0 0.917089658681053 NA NA prediction 0.834179317362105 Functional Gain - ALOX5AP ENSG00000132965 CDS Human protein_coding chr13:31309784 chr13:31309784 nonsynonymous SNV 0.882 1 21 hm7G_associated_SNPs_42289 0 0 0 0 2 ALOX5AP chr13:31309812 5'GT 31309812 Upstream 29bp 38877 chr6 49459874 49459874 1 + A G UCEC 49459874 + 49459854 49459894 41 CAGAAAGAAATTTTGGCGCTAATTCCAAACCAGAATGCTCT CAGAAAGAAATTTTGGCGCTGATTCCAAACCAGAATGCTCT Direct Gain 0 0.917081671362426 NA NA prediction 0.834163342724851 Functional Gain - CENPQ ENSG00000031691 CDS Human protein_coding chr6:49459874 chr6:49459874 synonymous SNV . 0 21 hm7G_associated_SNPs_42290 0 0 1 0 1 CENPQ chr6:49459857 3'AG 49459857 Downstream 18bp 38878 chr11 73105576 73105576 1 + C G LUSC 73105576 + 73105556 73105596 41 TGCCCGCACCGCCACCATCTCCACACCGTGCAGGGCCTGGC TGCCCGCACCGCCACCATCTGCACACCGTGCAGGGCCTGGC Direct Gain 0 0.917078748705321 NA NA prediction 0.834157497410642 Functional Gain - RELT ENSG00000054967 CDS Human protein_coding chr11:73105576 chr11:73105576 synonymous SNV . 0 21 hm7G_associated_SNPs_42291 0 0 0 0 1 RELT chr11:73105522 3'AG 73105522 Downstream 55bp 38879 chr11 114315274 114315274 1 + C G BLCA 114315274 + 114315254 114315294 41 CTCTTGCAGTCTGGCCTTACCAAGGCAGTGAAGGAGAGTAC CTCTTGCAGTCTGGCCTTACGAAGGCAGTGAAGGAGAGTAC Direct Gain 0 0.91707645805688 NA NA prediction 0.834152916113759 Functional Gain - REXO2 ENSG00000076043 CDS Human protein_coding chr11:114315274 chr11:114315274 synonymous SNV . 0 21 hm7G_associated_SNPs_42292 0 0 1 0 1 REXO2 chr11:114315263 3'AG 114315263 Downstream 12bp 38880 chr4 130030648 130030648 1 + C G LUAD 130030648 + 130030628 130030668 41 CAAGAACTTCCTTTATCGTTCAGAATGTCCAGAGGAGAGAC CAAGAACTTCCTTTATCGTTGAGAATGTCCAGAGGAGAGAC Direct Gain 0 0.91706686751812 NA NA prediction 0.834133735036241 Functional Gain - C4orf33 ENSG00000151470 CDS Human protein_coding chr4:130030648 chr4:130030648 stopgain 0.015 1 21 hm7G_associated_SNPs_42293 0 0 1 0 1 C4orf33 chr4:130030628 3'AG 130030628 Downstream 21bp 38881 chr5 36181987 36181987 1 + C G HNSC 36181987 + 36181967 36182007 41 TCGTGCCAGATGGTACCCTTCAACTGTTAAAGGAAGCCCTT TCGTGCCAGATGGTACCCTTGAACTGTTAAAGGAAGCCCTT Direct Gain 0 0.917058622386997 NA NA prediction 0.834117244773994 Functional Gain - SKP2 ENSG00000145604 CDS Human protein_coding chr5:36181987 chr5:36181987 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_42295 0 0 1 0 1 SKP2 chr5:36181920 3'AG 36181920 Downstream 68bp 38882 chr1 230827297 230827297 1 + A G COAD 230827297 + 230827277 230827317 41 GTTGGCCCTAGATGTTGAGTACTTGGGAGAGCAGGTAACCC GTTGGCCCTAGATGTTGAGTGCTTGGGAGAGCAGGTAACCC Direct Gain 0 0.917012012305226 NA NA prediction 0.834024024610452 Functional Gain - COG2 ENSG00000135775 CDS Human protein_coding chr1:230827297 chr1:230827297 nonsynonymous SNV 0.144 1 21 hm7G_associated_SNPs_42297 0 0 1 0 1 COG2 chr1:230827310 5'GT 230827310 Upstream 14bp 38883 chr3 111719786 111719786 1 + A G rs2292583 111719786 + 111719766 111719806 41 ATCTTTCAGACGGTGGATCTATGGGAAGGTAAACAGCCCCC ATCTTTCAGACGGTGGATCTGTGGGAAGGTAAACAGCCCCC Direct Gain 0 0.917001292230603 NA NA prediction 0.834002584461205 Functional Gain - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111719786 chr3:111719786 synonymous SNV . 0 21 hm7G_associated_SNPs_42299 0 0 0 0 1 TAGLN3 chr3:111719793 5'GT 111719793 Upstream 8bp 38884 chr16 23692315 23692315 1 + C G BRCA 23692315 + 23692295 23692335 41 GGACTCCTAATTACATAGCTCCCGAGGTGCTGAGCAAGAAA GGACTCCTAATTACATAGCTGCCGAGGTGCTGAGCAAGAAA Direct Gain 0 0.916988421063546 NA NA prediction 0.833976842127092 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23692315 chr16:23692315 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42300 0 0 1 0 2 PLK1 chr16:23692235 3'AG 23692235 Downstream 81bp 38885 chr16 23692315 23692315 1 + C G BRCA 23692315 + 23692295 23692335 41 GGACTCCTAATTACATAGCTCCCGAGGTGCTGAGCAAGAAA GGACTCCTAATTACATAGCTGCCGAGGTGCTGAGCAAGAAA Direct Gain 0 0.916988421063546 NA NA prediction 0.833976842127092 Functional Gain - PLK1 ENSG00000166851 CDS Human protein_coding chr16:23692315 chr16:23692315 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42300 0 0 1 0 2 PLK1 chr16:23692379 5'GT 23692379 Upstream 65bp 38886 chr10 43651197 43651197 1 + A G LIHC 43651197 + 43651177 43651217 41 CCTGATGAAGATGATGAACAAGAAGATGAGGAGGGTCCCCT CCTGATGAAGATGATGAACAGGAAGATGAGGAGGGTCCCCT Direct Gain 0 0.916978154729481 NA NA prediction 0.833956309458961 Functional Gain - CSGALNACT2 ENSG00000169826 CDS Human protein_coding chr10:43651197 chr10:43651197 synonymous SNV . 0 21 hm7G_associated_SNPs_42302 0 0 1 0 1 CSGALNACT2 chr10:43651258 5'GT 43651258 Upstream 62bp 38887 chr1 43805747 43805747 1 + C G BLCA 43805747 + 43805727 43805767 41 TGGGATCTCCCTCGGTGGCTCCTGGGGATCCTGGTCCCTCC TGGGATCTCCCTCGGTGGCTGCTGGGGATCCTGGTCCCTCC Direct Gain 0 0.916974203303235 NA NA prediction 0.833948406606469 Functional Gain - MPL ENSG00000117400 CDS Human protein_coding chr1:43805747 chr1:43805747 nonsynonymous SNV 0.982 4 21 hm7G_associated_SNPs_42303 0 0 0 0 1 MPL chr1:43805797 5'GT 43805797 Upstream 51bp 38888 chr1 45479618 45479618 1 + C G ESCA 45479618 + 45479598 45479638 41 CATGGTTGAGGGTGGTGGCTCAAGCACCATGGCTCAGGCCA CATGGTTGAGGGTGGTGGCTGAAGCACCATGGCTCAGGCCA Direct Gain 0 0.916968729259567 NA NA prediction 0.833937458519134 Functional Gain - UROD ENSG00000126088 CDS Human protein_coding chr1:45479618 chr1:45479618 stopgain 0.986 1 21 hm7G_associated_SNPs_42305 0 0 1 2 1 UROD chr1:45479581 3'AG 45479581 Downstream 38bp 38889 chr6 18399820 18399820 1 + C G LUSC 18399820 + 18399800 18399840 41 TGACTGCTGAAAATCCCACTCCTGGAGACCTGGCTCCGGCC TGACTGCTGAAAATCCCACTGCTGGAGACCTGGCTCCGGCC Direct Gain 0 0.916939225559601 NA NA prediction 0.833878451119202 Functional Gain - RNF144B ENSG00000137393 CDS Human protein_coding chr6:18399820 chr6:18399820 nonsynonymous SNV 0.004 0 21 hm7G_associated_SNPs_42308 0 0 1 0 1 RNF144B chr6:18399730 3'AG 18399730 Downstream 91bp 38890 chr20 56726068 56726068 1 + T G PRAD 56726068 + 56726048 56726088 41 GCGGCTGAACGCATGAACCTTGTGGGTCAGGATGAGATCTG GCGGCTGAACGCATGAACCTGGTGGGTCAGGATGAGATCTG Direct Gain 0 0.916916006623724 NA NA prediction 0.833832013247448 Functional Gain - C20orf85 ENSG00000124237 CDS Human protein_coding chr20:56726068 chr20:56726068 synonymous SNV . 0 21 hm7G_associated_SNPs_42310 0 0 0 0 1 C20orf85 chr20:56726088 5'GT 56726088 Upstream 21bp 38891 chr2 234975182 234975182 1 + T G UCEC 234975182 + 234975162 234975202 41 CCTGAATTTCTTTAGATGATTTTTGGGGACATGTTGGGATC CCTGAATTTCTTTAGATGATGTTTGGGGACATGTTGGGATC Direct Gain 0 0.916904469556609 NA NA prediction 0.833808939113218 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234975182 chr2:234975182 nonsynonymous SNV 0.708 0 21 hm7G_associated_SNPs_42311 0 0 0 0 2 SPP2 chr2:234975177 3'AG 234975177 Downstream 6bp 38892 chr2 234975182 234975182 1 + T G UCEC 234975182 + 234975162 234975202 41 CCTGAATTTCTTTAGATGATTTTTGGGGACATGTTGGGATC CCTGAATTTCTTTAGATGATGTTTGGGGACATGTTGGGATC Direct Gain 0 0.916904469556609 NA NA prediction 0.833808939113218 Functional Gain - SPP2 ENSG00000072080 CDS Human protein_coding chr2:234975182 chr2:234975182 nonsynonymous SNV 0.708 0 21 hm7G_associated_SNPs_42311 0 0 0 0 2 SPP2 chr2:234975231 5'GT 234975231 Upstream 50bp 38893 chr1 158914677 158914677 1 + A G GBM 158914677 + 158914657 158914697 41 ACTTTCAGATACAGAAAAATACAAACCAGAGAAGCCATGAC ACTTTCAGATACAGAAAAATGCAAACCAGAGAAGCCATGAC Direct Gain 0 0.916902105629663 NA NA prediction 0.833804211259326 Functional Gain - PYHIN1 ENSG00000163564 CDS Human protein_coding chr1:158914677 chr1:158914677 nonsynonymous SNV 0.001 0 21 hm7G_associated_SNPs_42312 0 0 0 0 1 PYHIN1 chr1:158914665 3'AG 158914665 Downstream 13bp 38894 chr4 113568940 113568940 1 + A G LUSC 113568940 + 113568920 113568960 41 AAACATAAGAAAAAACATAAAGAGAGACATAAAATGGGAGA AAACATAAGAAAAAACATAAGGAGAGACATAAAATGGGAGA Direct Gain 0 0.916898646904158 NA NA prediction 0.833797293808315 Functional Gain - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113568940 chr4:113568940 synonymous SNV . 0 21 hm7G_associated_SNPs_42313 0 0 0 0 2 LARP7 chr4:113568846 3'AG 113568846 Downstream 95bp 38895 chr4 113568940 113568940 1 + A G LUSC 113568940 + 113568920 113568960 41 AAACATAAGAAAAAACATAAAGAGAGACATAAAATGGGAGA AAACATAAGAAAAAACATAAGGAGAGACATAAAATGGGAGA Direct Gain 0 0.916898646904158 NA NA prediction 0.833797293808315 Functional Gain - LARP7 ENSG00000174720 CDS Human protein_coding chr4:113568940 chr4:113568940 synonymous SNV . 0 21 hm7G_associated_SNPs_42313 0 0 0 0 2 LARP7 chr4:113568990 5'GT 113568990 Upstream 51bp 38896 chr1 76257164 76257164 1 + A G UCEC 76257164 + 76257144 76257184 41 AGGGGAAGCTTGATGCTATTAATGTGGAAAAGGCAATCGAA AGGGGAAGCTTGATGCTATTGATGTGGAAAAGGCAATCGAA Direct Gain 0 0.916874444562756 NA NA prediction 0.833748889125511 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76257164 chr1:76257164 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_42314 0 0 1 0 2 RABGGTB chr1:76257146 3'AG 76257146 Downstream 19bp 38897 chr1 76257164 76257164 1 + A G UCEC 76257164 + 76257144 76257184 41 AGGGGAAGCTTGATGCTATTAATGTGGAAAAGGCAATCGAA AGGGGAAGCTTGATGCTATTGATGTGGAAAAGGCAATCGAA Direct Gain 0 0.916874444562756 NA NA prediction 0.833748889125511 Functional Gain - RABGGTB ENSG00000137955 CDS Human protein_coding chr1:76257164 chr1:76257164 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_42314 0 0 1 0 2 RABGGTB chr1:76257256 5'GT 76257256 Upstream 93bp 38898 chr1 52871508 52871508 1 + T G STAD 52871508 + 52871488 52871528 41 GTTTATCAAAAATGAAGATTTCAAGTGAGTGCAATGTTCAC GTTTATCAAAAATGAAGATTGCAAGTGAGTGCAATGTTCAC Direct Gain 0 0.916863654091779 NA NA prediction 0.833727308183558 Functional Gain - PRPF38A ENSG00000134748 CDS Human protein_coding chr1:52871508 chr1:52871508 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42316 0 0 1 0 1 PRPF38A chr1:52871511 5'GT 52871511 Upstream 4bp 38899 chr1 156105094 156105094 1 + C G KIRC 156105094 + 156105074 156105114 41 TCTGCCCAGCTCAGCCAGCTCCAGAAGCAGGTGATACCCCA TCTGCCCAGCTCAGCCAGCTGCAGAAGCAGGTGATACCCCA Direct Gain 0 0.91685725451228 NA NA prediction 0.833714509024559 Functional Gain - LMNA ENSG00000160789 CDS Human protein_coding chr1:156105094 chr1:156105094 synonymous SNV . 0 21 hm7G_associated_SNPs_42318 0 0 1 0 1 LMNA chr1:156105103 5'GT 156105103 Upstream 10bp 38900 chr17 60493432 60493432 1 + C G LUSC 60493432 + 60493412 60493452 41 CGAAAAGAGATGCTAAACCTCTGGCAGAAGATCCGAGGGGA CGAAAAGAGATGCTAAACCTGTGGCAGAAGATCCGAGGGGA Direct Gain 0 0.916840774376924 NA NA prediction 0.833681548753848 Functional Gain - EFCAB3 ENSG00000172421 CDS Human protein_coding chr17:60493432 chr17:60493432 synonymous SNV . 0 21 hm7G_associated_SNPs_42319 0 0 0 0 1 EFCAB3 chr17:60493364 3'AG 60493364 Downstream 69bp 38901 chr3 172499973 172499973 1 + A G LUAD 172499973 + 172499953 172499993 41 GATGATCTTGAAGACCTTATAGTTAATTGGGATGAGAGCAA GATGATCTTGAAGACCTTATGGTTAATTGGGATGAGAGCAA Direct Gain 0 0.916817746644497 NA NA prediction 0.833635493288993 Functional Gain - ECT2 ENSG00000114346 CDS Human protein_coding chr3:172499973 chr3:172499973 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_42322 0 0 1 0 2 ECT2 chr3:172499953 3'AG 172499953 Downstream 21bp 38902 chr3 172499973 172499973 1 + A G LUAD 172499973 + 172499953 172499993 41 GATGATCTTGAAGACCTTATAGTTAATTGGGATGAGAGCAA GATGATCTTGAAGACCTTATGGTTAATTGGGATGAGAGCAA Direct Gain 0 0.916817746644497 NA NA prediction 0.833635493288993 Functional Gain - ECT2 ENSG00000114346 CDS Human protein_coding chr3:172499973 chr3:172499973 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_42322 0 0 1 0 2 ECT2 chr3:172500021 5'GT 172500021 Upstream 49bp 38903 chr5 128368833 128368833 1 + T G UCEC 128368833 + 128368813 128368853 41 AACAGGAACATTCAAACTATTGAAGCATCAGTTGGTGGAAG AACAGGAACATTCAAACTATGGAAGCATCAGTTGGTGGAAG Direct Gain 0 0.916810116682038 NA NA prediction 0.833620233364075 Functional Gain - SLC27A6 ENSG00000113396 CDS Human protein_coding chr5:128368833 chr5:128368833 nonsynonymous SNV 0.587 1 21 hm7G_associated_SNPs_42323 0 0 0 0 1 SLC27A6 chr5:128368799 3'AG 128368799 Downstream 35bp 38904 chr16 4797371 4797371 1 + C G BLCA 4797371 + 4797351 4797391 41 ACCGGGAAAAGCCAGCTTCTCCAGCAGCTCAGGGCCTTTCA ACCGGGAAAAGCCAGCTTCTGCAGCAGCTCAGGGCCTTTCA Direct Gain 0 0.916800528096344 NA NA prediction 0.833601056192689 Functional Gain - C16orf71 ENSG00000166246 CDS Human protein_coding chr16:4797371 chr16:4797371 synonymous SNV . 0 21 hm7G_associated_SNPs_42325 0 0 0 0 1 C16orf71 chr16:4797344 3'AG 4797344 Downstream 28bp 38905 chr19 49994103 49994103 1 + C G rs142574485 49994103 + 49994083 49994123 41 CTCAAGGTGTTTGACGGCATCCCACCGCCCTACGACAAGGT CTCAAGGTGTTTGACGGCATGCCACCGCCCTACGACAAGGT Direct Gain 0 0.91678683259842 NA NA prediction 0.833573665196839 Functional Gain - RPL13A ENSG00000142541 CDS Human protein_coding chr19:49994103 chr19:49994103 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_42326 0 0 1 0 2 RPL13A chr19:49994036 3'AG 49994036 Downstream 68bp 38906 chr19 49994103 49994103 1 + C G rs142574485 49994103 + 49994083 49994123 41 CTCAAGGTGTTTGACGGCATCCCACCGCCCTACGACAAGGT CTCAAGGTGTTTGACGGCATGCCACCGCCCTACGACAAGGT Direct Gain 0 0.91678683259842 NA NA prediction 0.833573665196839 Functional Gain - RPL13A ENSG00000142541 CDS Human protein_coding chr19:49994103 chr19:49994103 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_42326 0 0 1 0 2 RPL13A chr19:49994121 5'GT 49994121 Upstream 19bp 38907 chr17 45913467 45913467 1 + C G rs77476216 45913467 + 45913447 45913487 41 GCACCAACCAGGATGGCTACCGGTAAGGAGTGGAGGGTGGG GCACCAACCAGGATGGCTACGGGTAAGGAGTGGAGGGTGGG Direct Gain 0 0.916766125860312 NA NA prediction 0.833532251720624 Functional Gain - LRRC46 ENSG00000141294 CDS Human protein_coding chr17:45913467 chr17:45913467 nonsynonymous SNV 0.970 4 21 hm7G_associated_SNPs_42327 0 0 0 0 2 LRRC46 chr17:45913399 3'AG 45913399 Downstream 69bp 38908 chr17 45913467 45913467 1 + C G rs77476216 45913467 + 45913447 45913487 41 GCACCAACCAGGATGGCTACCGGTAAGGAGTGGAGGGTGGG GCACCAACCAGGATGGCTACGGGTAAGGAGTGGAGGGTGGG Direct Gain 0 0.916766125860312 NA NA prediction 0.833532251720624 Functional Gain - LRRC46 ENSG00000141294 CDS Human protein_coding chr17:45913467 chr17:45913467 nonsynonymous SNV 0.970 4 21 hm7G_associated_SNPs_42327 0 0 0 0 2 LRRC46 chr17:45913468 5'GT 45913468 Upstream 2bp 38909 chr9 108457020 108457020 1 + C G BLCA 108457020 + 108457000 108457040 41 TTTTTGACATCGCGCACTATCTAGTGTCAGTGATGGCGGTG TTTTTGACATCGCGCACTATGTAGTGTCAGTGATGGCGGTG Direct Gain 0 0.916763754872282 NA NA prediction 0.833527509744563 Functional Gain - TMEM38B ENSG00000095209 CDS Human protein_coding chr9:108457020 chr9:108457020 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_42328 0 0 1 0 1 TMEM38B chr9:108457053 5'GT 108457053 Upstream 34bp 38910 chr6 150111138 150111138 1 + A G LGG 150111138 + 150111118 150111158 41 ATCAGTTGCATGAAGGAGCTAAAGCTCTTGATGTAGGATCT ATCAGTTGCATGAAGGAGCTGAAGCTCTTGATGTAGGATCT Direct Gain 0 0.916761849269781 NA NA prediction 0.833523698539563 Functional Gain - PCMT1 ENSG00000120265 CDS Human protein_coding chr6:150111138 chr6:150111138 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42329 0 0 1 0 2 PCMT1 chr6:150111090 3'AG 150111090 Downstream 49bp 38911 chr6 150111138 150111138 1 + A G LGG 150111138 + 150111118 150111158 41 ATCAGTTGCATGAAGGAGCTAAAGCTCTTGATGTAGGATCT ATCAGTTGCATGAAGGAGCTGAAGCTCTTGATGTAGGATCT Direct Gain 0 0.916761849269781 NA NA prediction 0.833523698539563 Functional Gain - PCMT1 ENSG00000120265 CDS Human protein_coding chr6:150111138 chr6:150111138 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42329 0 0 1 0 2 PCMT1 chr6:150111194 5'GT 150111194 Upstream 57bp 38912 chr18 9931887 9931887 1 + A G STAD 9931887 + 9931867 9931907 41 TGTGTTTCAAAGTGAAGACTACAGCACCTCGCCGGTACTGT TGTGTTTCAAAGTGAAGACTGCAGCACCTCGCCGGTACTGT Direct Gain 0 0.916758741439606 NA NA prediction 0.833517482879212 Functional Gain - VAPA ENSG00000101558 CDS Human protein_coding chr18:9931887 chr18:9931887 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42330 0 0 1 0 2 VAPA chr18:9931807 3'AG 9931807 Downstream 81bp 38913 chr18 9931887 9931887 1 + A G STAD 9931887 + 9931867 9931907 41 TGTGTTTCAAAGTGAAGACTACAGCACCTCGCCGGTACTGT TGTGTTTCAAAGTGAAGACTGCAGCACCTCGCCGGTACTGT Direct Gain 0 0.916758741439606 NA NA prediction 0.833517482879212 Functional Gain - VAPA ENSG00000101558 CDS Human protein_coding chr18:9931887 chr18:9931887 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42330 0 0 1 0 2 VAPA chr18:9931959 5'GT 9931959 Upstream 73bp 38914 chr4 145655948 145655948 1 + T G UCEC 145655948 + 145655928 145655968 41 AACCTGCACAGACACTGACTTCAGAGTGCTCCAGGCTCTGT AACCTGCACAGACACTGACTGCAGAGTGCTCCAGGCTCTGT Direct Gain 0 0.916742560185901 NA NA prediction 0.833485120371802 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145655948 chr4:145655948 nonsynonymous SNV 0.326 2 21 hm7G_associated_SNPs_42332 0 0 0 0 2 HHIP chr4:145655893 3'AG 145655893 Downstream 56bp 38915 chr4 145655948 145655948 1 + T G UCEC 145655948 + 145655928 145655968 41 AACCTGCACAGACACTGACTTCAGAGTGCTCCAGGCTCTGT AACCTGCACAGACACTGACTGCAGAGTGCTCCAGGCTCTGT Direct Gain 0 0.916742560185901 NA NA prediction 0.833485120371802 Functional Gain - HHIP ENSG00000164161 CDS Human protein_coding chr4:145655948 chr4:145655948 nonsynonymous SNV 0.326 2 21 hm7G_associated_SNPs_42332 0 0 0 0 2 HHIP chr4:145656041 5'GT 145656041 Upstream 94bp 38916 chr2 234905095 234905095 1 + A G LIHC 234905095 + 234905075 234905115 41 CATCGTCTTCGCTTACTTCTACATGGTGGTGAAGAAGTGCT CATCGTCTTCGCTTACTTCTGCATGGTGGTGAAGAAGTGCT Direct Gain 0 0.916739942266431 NA NA prediction 0.833479884532861 Functional Gain - TRPM8 ENSG00000144481 CDS Human protein_coding chr2:234905095 chr2:234905095 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42333 0 0 0 1 1 TRPM8 chr2:234905160 5'GT 234905160 Upstream 66bp 38917 chr5 94025225 94025225 1 + A G COAD 94025225 + 94025205 94025245 41 ATCATTAAAAAAATTGAAAAAGAAGTCAGAAGGAGAATTGT ATCATTAAAAAAATTGAAAAGGAAGTCAGAAGGAGAATTGT Direct Gain 0 0.91672604090093 NA NA prediction 0.833452081801861 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94025225 chr5:94025225 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42334 0 0 1 0 2 SLF1 chr5:94025178 3'AG 94025178 Downstream 48bp 38918 chr5 94025225 94025225 1 + A G COAD 94025225 + 94025205 94025245 41 ATCATTAAAAAAATTGAAAAAGAAGTCAGAAGGAGAATTGT ATCATTAAAAAAATTGAAAAGGAAGTCAGAAGGAGAATTGT Direct Gain 0 0.91672604090093 NA NA prediction 0.833452081801861 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94025225 chr5:94025225 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42334 0 0 1 0 2 SLF1 chr5:94025311 5'GT 94025311 Upstream 87bp 38919 chrX 69502164 69502164 1 + A G OV 69502164 + 69502144 69502184 41 ACCAGTCTCTGTGCAAATCTAAACTCTTATTCCTGGGAGAG ACCAGTCTCTGTGCAAATCTGAACTCTTATTCCTGGGAGAG Direct Gain 0 0.916723135212269 NA NA prediction 0.833446270424538 Functional Gain - RAB41 ENSG00000147127 CDS Human protein_coding chrX:69502164 chrX:69502164 nonsynonymous SNV 0.042 4 21 hm7G_associated_SNPs_42335 0 0 0 0 1 RAB41 chrX:69502191 5'GT 69502191 Upstream 28bp 38920 chr2 217288362 217288362 1 + A G COAD 217288362 + 217288342 217288382 41 TCTTGTCATTGCAGATGTCAAGACCAGGAAGTGGAGCTTTC TCTTGTCATTGCAGATGTCAGGACCAGGAAGTGGAGCTTTC Direct Gain 0 0.916711043867155 NA NA prediction 0.833422087734309 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217288362 chr2:217288362 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42336 0 0 1 0 2 SMARCAL1 chr2:217288356 3'AG 217288356 Downstream 7bp 38921 chr2 217288362 217288362 1 + A G COAD 217288362 + 217288342 217288382 41 TCTTGTCATTGCAGATGTCAAGACCAGGAAGTGGAGCTTTC TCTTGTCATTGCAGATGTCAGGACCAGGAAGTGGAGCTTTC Direct Gain 0 0.916711043867155 NA NA prediction 0.833422087734309 Functional Gain - SMARCAL1 ENSG00000138375 CDS Human protein_coding chr2:217288362 chr2:217288362 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42336 0 0 1 0 2 SMARCAL1 chr2:217288406 5'GT 217288406 Upstream 45bp 38922 chr18 43705734 43705734 1 + A G UCEC 43705734 + 43705714 43705754 41 CGTCTCTTGCTCAAGTGAAAATTGAAGAAGCAAAGCGAGAA CGTCTCTTGCTCAAGTGAAAGTTGAAGAAGCAAAGCGAGAA Direct Gain 0 0.916703840088036 NA NA prediction 0.833407680176073 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43705734 chr18:43705734 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42337 0 0 1 0 2 HAUS1 chr18:43705710 3'AG 43705710 Downstream 25bp 38923 chr18 43705734 43705734 1 + A G UCEC 43705734 + 43705714 43705754 41 CGTCTCTTGCTCAAGTGAAAATTGAAGAAGCAAAGCGAGAA CGTCTCTTGCTCAAGTGAAAGTTGAAGAAGCAAAGCGAGAA Direct Gain 0 0.916703840088036 NA NA prediction 0.833407680176073 Functional Gain - HAUS1 ENSG00000152240 CDS Human protein_coding chr18:43705734 chr18:43705734 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42337 0 0 1 0 2 HAUS1 chr18:43705757 5'GT 43705757 Upstream 24bp 38924 chr3 112715755 112715755 1 + T G UCEC 112715755 + 112715735 112715775 41 ATAGCTTGAAGAGAACATTTTTATTAGTGGATAGCGTTGTT ATAGCTTGAAGAGAACATTTGTATTAGTGGATAGCGTTGTT Direct Gain 0 0.916701015493115 NA NA prediction 0.833402030986231 Functional Gain - GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112715755 chr3:112715755 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42340 0 0 1 0 2 GTPBP8 chr3:112715739 3'AG 112715739 Downstream 17bp 38925 chr3 112715755 112715755 1 + T G UCEC 112715755 + 112715735 112715775 41 ATAGCTTGAAGAGAACATTTTTATTAGTGGATAGCGTTGTT ATAGCTTGAAGAGAACATTTGTATTAGTGGATAGCGTTGTT Direct Gain 0 0.916701015493115 NA NA prediction 0.833402030986231 Functional Gain - GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112715755 chr3:112715755 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42340 0 0 1 0 2 GTPBP8 chr3:112715838 5'GT 112715838 Upstream 84bp 38926 chr3 112718380 112718380 1 + C G CESC 112718380 + 112718360 112718400 41 AATTTGTTAACATGAAAACTCAAGGATGTTTTCCTCAGTTG AATTTGTTAACATGAAAACTGAAGGATGTTTTCCTCAGTTG Direct Gain 0 0.916690053197672 NA NA prediction 0.833380106395345 Functional Gain - GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112718380 chr3:112718380 nonsynonymous SNV 0.962 2 21 hm7G_associated_SNPs_42342 0 0 1 0 2 GTPBP8 chr3:112718293 3'AG 112718293 Downstream 88bp 38927 chr3 112718380 112718380 1 + C G CESC 112718380 + 112718360 112718400 41 AATTTGTTAACATGAAAACTCAAGGATGTTTTCCTCAGTTG AATTTGTTAACATGAAAACTGAAGGATGTTTTCCTCAGTTG Direct Gain 0 0.916690053197672 NA NA prediction 0.833380106395345 Functional Gain - GTPBP8 ENSG00000163607 CDS Human protein_coding chr3:112718380 chr3:112718380 nonsynonymous SNV 0.962 2 21 hm7G_associated_SNPs_42342 0 0 1 0 2 GTPBP8 chr3:112718411 5'GT 112718411 Upstream 32bp 38928 chr1 212533986 212533986 1 + A G LUSC 212533986 + 212533966 212534006 41 TGGTTTATCTACAGAGAGAAAAAGAAGGAATTGGAACGTGA TGGTTTATCTACAGAGAGAAGAAGAAGGAATTGGAACGTGA Direct Gain 0 0.91668772523438 NA NA prediction 0.833375450468761 Functional Gain - PPP2R5A ENSG00000066027 CDS Human protein_coding chr1:212533986 chr1:212533986 synonymous SNV . 0 21 hm7G_associated_SNPs_42343 0 0 1 0 1 PPP2R5A chr1:212533980 3'AG 212533980 Downstream 7bp 38929 chr6 96053653 96053653 1 + A G UCEC 96053653 + 96053633 96053673 41 TCATCCGGCCTTTTACAGGTACAAGACGAAGACTGGCAATG TCATCCGGCCTTTTACAGGTGCAAGACGAAGACTGGCAATG Direct Gain 0 0.916681183011329 NA NA prediction 0.833362366022658 Functional Gain - MANEA ENSG00000172469 CDS Human protein_coding chr6:96053653 chr6:96053653 nonsynonymous SNV 0.845 5 21 hm7G_associated_SNPs_42344 0 0 1 0 1 MANEA chr6:96053624 3'AG 96053624 Downstream 30bp 38930 chr4 15709251 15709251 1 + C G HNSC 15709251 + 15709231 15709271 41 CAGATTTCTTGAGCTGGTGTCGACAGAAAAATGACTCTGGT CAGATTTCTTGAGCTGGTGTGGACAGAAAAATGACTCTGGT Direct Gain 0 0.916669527775093 NA NA prediction 0.833339055550187 Functional Gain - BST1 ENSG00000109743 CDS Human protein_coding chr4:15709251 chr4:15709251 nonsynonymous SNV 0.995 0 21 hm7G_associated_SNPs_42346 0 0 0 0 1 BST1 chr4:15709269 5'GT 15709269 Upstream 19bp 38931 chr20 62904645 62904645 1 + C G LUAD 62904645 + 62904625 62904665 41 GCACCATTAAAAAGATTATTCATCAGGAAACTGTGAGCAAA GCACCATTAAAAAGATTATTGATCAGGAAACTGTGAGCAAA Direct Gain 0 0.916650483409799 NA NA prediction 0.833300966819598 Functional Gain - PCMTD2 ENSG00000203880 CDS Human protein_coding chr20:62904645 chr20:62904645 nonsynonymous SNV 0.419 0 21 hm7G_associated_SNPs_42348 0 0 1 0 1 PCMTD2 chr20:62904574 3'AG 62904574 Downstream 72bp 38932 chr19 45540760 45540760 1 + C G LUAD 45540760 + 45540740 45540780 41 CCCCCTGGCGGGCCTGACCTCCTGGACGATGGCTTTGCCTA CCCCCTGGCGGGCCTGACCTGCTGGACGATGGCTTTGCCTA Direct Gain 0 0.916647095761424 NA NA prediction 0.833294191522848 Functional Gain - RELB ENSG00000104856 CDS Human protein_coding chr19:45540760 chr19:45540760 synonymous SNV . 0 21 hm7G_associated_SNPs_42349 0 0 0 0 1 RELB chr19:45540663 3'AG 45540663 Downstream 98bp 38933 chr9 84604702 84604702 1 + A G UCEC 84604702 + 84604682 84604722 41 TTTGTTCTCAGCATCAGGGCAGAGCCAAGAGGAGAAGGAAA TTTGTTCTCAGCATCAGGGCGGAGCCAAGAGGAGAAGGAAA Direct Gain 0 0.916638930418499 NA NA prediction 0.833277860836998 Functional Gain - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84604702 chr9:84604702 nonsynonymous SNV 0.057 2 21 hm7G_associated_SNPs_42350 0 0 0 0 2 SPATA31D1 chr9:84604693 3'AG 84604693 Downstream 10bp 38934 chr9 84604702 84604702 1 + A G UCEC 84604702 + 84604682 84604722 41 TTTGTTCTCAGCATCAGGGCAGAGCCAAGAGGAGAAGGAAA TTTGTTCTCAGCATCAGGGCGGAGCCAAGAGGAGAAGGAAA Direct Gain 0 0.916638930418499 NA NA prediction 0.833277860836998 Functional Gain - SPATA31D1 ENSG00000214929 CDS Human protein_coding chr9:84604702 chr9:84604702 nonsynonymous SNV 0.057 2 21 hm7G_associated_SNPs_42350 0 0 0 0 2 SPATA31D1 chr9:84604738 5'GT 84604738 Upstream 37bp 38935 chr2 108868855 108868855 1 + T G UCEC 108868855 + 108868835 108868875 41 CATGAAATTTTAGACATGATTCTAAATGATGGTGATGTGGA CATGAAATTTTAGACATGATGCTAAATGATGGTGATGTGGA Direct Gain 0 0.916638795904001 NA NA prediction 0.833277591808001 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108868855 chr2:108868855 nonsynonymous SNV 0.008 4 21 hm7G_associated_SNPs_42351 0 0 0 0 2 SULT1C3 chr2:108868821 3'AG 108868821 Downstream 35bp 38936 chr2 108868855 108868855 1 + T G UCEC 108868855 + 108868835 108868875 41 CATGAAATTTTAGACATGATTCTAAATGATGGTGATGTGGA CATGAAATTTTAGACATGATGCTAAATGATGGTGATGTGGA Direct Gain 0 0.916638795904001 NA NA prediction 0.833277591808001 Functional Gain - SULT1C3 ENSG00000196228 CDS Human protein_coding chr2:108868855 chr2:108868855 nonsynonymous SNV 0.008 4 21 hm7G_associated_SNPs_42351 0 0 0 0 2 SULT1C3 chr2:108868949 5'GT 108868949 Upstream 95bp 38937 chr2 30480370 30480370 1 + A G LIHC 30480370 + 30480350 30480390 41 CTGCCCTCCATAGTGGTGGAACCCACAGAAGGGGAGGTGGA CTGCCCTCCATAGTGGTGGAGCCCACAGAAGGGGAGGTGGA Direct Gain 0 0.916621458720467 NA NA prediction 0.833242917440933 Functional Gain - LBH ENSG00000213626 CDS Human protein_coding chr2:30480370 chr2:30480370 synonymous SNV . 0 21 hm7G_associated_SNPs_42353 0 0 1 0 1 LBH chr2:30480299 3'AG 30480299 Downstream 72bp 38938 chr14 24607325 24607325 1 + A G OV 24607325 + 24607305 24607345 41 CAATTTTGGAGTGGCTGTCCAGGTGAGAGCGCTGCCCCACT CAATTTTGGAGTGGCTGTCCGGGTGAGAGCGCTGCCCCACT Direct Gain 0 0.916614929946789 NA NA prediction 0.833229859893577 Functional Gain - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607325 chr14:24607325 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42355 0 0 1 0 2 PSME1 chr14:24607258 3'AG 24607258 Downstream 68bp 38939 chr14 24607325 24607325 1 + A G OV 24607325 + 24607305 24607345 41 CAATTTTGGAGTGGCTGTCCAGGTGAGAGCGCTGCCCCACT CAATTTTGGAGTGGCTGTCCGGGTGAGAGCGCTGCCCCACT Direct Gain 0 0.916614929946789 NA NA prediction 0.833229859893577 Functional Gain - PSME1 ENSG00000092010 CDS Human protein_coding chr14:24607325 chr14:24607325 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42355 0 0 1 0 2 PSME1 chr14:24607326 5'GT 24607326 Upstream 2bp 38940 chr15 43641181 43641181 1 + A G rs77284705 43641181 + 43641161 43641201 41 CGGGCATGGAACATTTCTCAACTCCGGTGAGGGAGGATCCC CGGGCATGGAACATTTCTCAGCTCCGGTGAGGGAGGATCCC Direct Gain 0 0.916606557270282 NA NA prediction 0.833213114540564 Functional Gain - ADAL ENSG00000168803 CDS Human protein_coding chr15:43641181 chr15:43641181 nonsynonymous SNV 0.345 1 21 hm7G_associated_SNPs_42357 0 0 1 0 2 ADAL chr15:43641105 3'AG 43641105 Downstream 77bp 38941 chr15 43641181 43641181 1 + A G rs77284705 43641181 + 43641161 43641201 41 CGGGCATGGAACATTTCTCAACTCCGGTGAGGGAGGATCCC CGGGCATGGAACATTTCTCAGCTCCGGTGAGGGAGGATCCC Direct Gain 0 0.916606557270282 NA NA prediction 0.833213114540564 Functional Gain - ADAL ENSG00000168803 CDS Human protein_coding chr15:43641181 chr15:43641181 nonsynonymous SNV 0.345 1 21 hm7G_associated_SNPs_42357 0 0 1 0 2 ADAL chr15:43641243 5'GT 43641243 Upstream 63bp 38942 chr2 238925217 238925217 1 + A G STAD 238925217 + 238925197 238925237 41 TTTTTTGATAGATGAGGGTTACTACCAGGGTGGAAAATTTC TTTTTTGATAGATGAGGGTTGCTACCAGGGTGGAAAATTTC Direct Gain 0 0.916603090113029 NA NA prediction 0.833206180226057 Functional Gain - UBE2F ENSG00000184182;ENSG00000258984 CDS Human other chr2:238925217 chr2:238925217 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42358 0 0 0 2 2 UBE2F chr2:238925208 3'AG 238925208 Downstream 10bp 38943 chr2 238925217 238925217 1 + A G STAD 238925217 + 238925197 238925237 41 TTTTTTGATAGATGAGGGTTACTACCAGGGTGGAAAATTTC TTTTTTGATAGATGAGGGTTGCTACCAGGGTGGAAAATTTC Direct Gain 0 0.916603090113029 NA NA prediction 0.833206180226057 Functional Gain - UBE2F ENSG00000184182;ENSG00000258984 CDS Human other chr2:238925217 chr2:238925217 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42358 0 0 0 2 2 UBE2F chr2:238925275 5'GT 238925275 Upstream 59bp 38944 chr16 29857194 29857194 1 + C G LUAD 29857194 + 29857174 29857214 41 TCTCCTCCAGGCATGAGGCTCAGAGACTGGAGCAGGAAGCC TCTCCTCCAGGCATGAGGCTGAGAGACTGGAGCAGGAAGCC Direct Gain 0 0.916592767563729 NA NA prediction 0.833185535127459 Functional Gain - MVP ENSG00000013364 CDS Human protein_coding chr16:29857194 chr16:29857194 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42360 0 0 0 0 1 MVP chr16:29857184 3'AG 29857184 Downstream 11bp 38945 chr1 100606469 100606469 1 + A G LUAD 100606469 + 100606449 100606489 41 TCCAAGAAGATGCTTTGTTGAGTTTGGAGCGGGAAAGGGAA TCCAAGAAGATGCTTTGTTGGGTTTGGAGCGGGAAAGGGAA Direct Gain 0 0.916530576043828 NA NA prediction 0.833061152087655 Functional Gain - TRMT13 ENSG00000122435 CDS Human protein_coding chr1:100606469 chr1:100606469 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42361 0 0 1 2 1 TRMT13 chr1:100606408 3'AG 100606408 Downstream 62bp 38946 chr8 11683711 11683711 1 + T G UCEC 11683711 + 11683691 11683731 41 CCAGCAAGGAGGAAGAGAGTTCTGGCCTCAAGAGGTAACAG CCAGCAAGGAGGAAGAGAGTGCTGGCCTCAAGAGGTAACAG Direct Gain 0 0.916516488726918 NA NA prediction 0.833032977453837 Functional Gain - FDFT1 ENSG00000079459 CDS Human protein_coding chr8:11683711 chr8:11683711 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42363 0 0 1 0 1 FDFT1 chr8:11683724 5'GT 11683724 Upstream 14bp 38947 chr15 45556939 45556939 1 + A G LUSC 45556939 + 45556919 45556959 41 ACTGATCTTGGATATACTGTATTTCAGTGGCTGGGAGAGCA ACTGATCTTGGATATACTGTGTTTCAGTGGCTGGGAGAGCA Direct Gain 0 0.916508202377633 NA NA prediction 0.833016404755265 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45556939 chr15:45556939 synonymous SNV . 0 21 hm7G_associated_SNPs_42365 0 0 0 0 2 SLC28A2 chr15:45556853 3'AG 45556853 Downstream 87bp 38948 chr15 45556939 45556939 1 + A G LUSC 45556939 + 45556919 45556959 41 ACTGATCTTGGATATACTGTATTTCAGTGGCTGGGAGAGCA ACTGATCTTGGATATACTGTGTTTCAGTGGCTGGGAGAGCA Direct Gain 0 0.916508202377633 NA NA prediction 0.833016404755265 Functional Gain - SLC28A2 ENSG00000137860 CDS Human protein_coding chr15:45556939 chr15:45556939 synonymous SNV . 0 21 hm7G_associated_SNPs_42365 0 0 0 0 2 SLC28A2 chr15:45556966 5'GT 45556966 Upstream 28bp 38949 chr1 171289014 171289014 1 + C G STAD 171289014 + 171288994 171289034 41 TGGTGTGAGTGGCCTCTCCTCCATCAAATGCTGTGTGGATG TGGTGTGAGTGGCCTCTCCTGCATCAAATGCTGTGTGGATG Direct Gain 0 0.916496424749696 NA NA prediction 0.832992849499391 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171289014 chr1:171289014 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_42366 0 0 0 0 2 FMO4 chr1:171288957 3'AG 171288957 Downstream 58bp 38950 chr1 171289014 171289014 1 + C G STAD 171289014 + 171288994 171289034 41 TGGTGTGAGTGGCCTCTCCTCCATCAAATGCTGTGTGGATG TGGTGTGAGTGGCCTCTCCTGCATCAAATGCTGTGTGGATG Direct Gain 0 0.916496424749696 NA NA prediction 0.832992849499391 Functional Gain - FMO4 ENSG00000076258 CDS Human protein_coding chr1:171289014 chr1:171289014 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_42366 0 0 0 0 2 FMO4 chr1:171289096 5'GT 171289096 Upstream 83bp 38951 chr5 14607511 14607511 1 + A G LUSC 14607511 + 14607491 14607531 41 GTTTTGGTCCTGAGAAGTATACAGGCTCGAATGTGTTTGGA GTTTTGGTCCTGAGAAGTATGCAGGCTCGAATGTGTTTGGA Direct Gain 0 0.916469393044954 NA NA prediction 0.832938786089907 Functional Gain - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14607511 chr5:14607511 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_42368 0 0 1 0 2 FAM105A chr5:14607439 3'AG 14607439 Downstream 73bp 38952 chr5 14607511 14607511 1 + A G LUSC 14607511 + 14607491 14607531 41 GTTTTGGTCCTGAGAAGTATACAGGCTCGAATGTGTTTGGA GTTTTGGTCCTGAGAAGTATGCAGGCTCGAATGTGTTTGGA Direct Gain 0 0.916469393044954 NA NA prediction 0.832938786089907 Functional Gain - FAM105A ENSG00000145569 CDS Human protein_coding chr5:14607511 chr5:14607511 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_42368 0 0 1 0 2 FAM105A chr5:14607567 5'GT 14607567 Upstream 57bp 38953 chr4 187005868 187005868 1 + T G rs115677523 187005868 + 187005848 187005888 41 TCCATTATATTGGTTTTCCTTGAGGAGATTCCAGATTATAA TCCATTATATTGGTTTTCCTGGAGGAGATTCCAGATTATAA Direct Gain 0 0.916414514699878 NA NA prediction 0.832829029399755 Functional Gain - TLR3 ENSG00000164342 CDS Human protein_coding chr4:187005868 chr4:187005868 synonymous SNV . 0 21 hm7G_associated_SNPs_42373 0 0 1 0 1 TLR3 chr4:187005799 3'AG 187005799 Downstream 70bp 38954 chr8 37607969 37607969 1 + A G LUSC 37607969 + 37607949 37607989 41 GAAACAGAAGGTGGTGGAAAAGGAAGCAGAGACAGAGCGGA GAAACAGAAGGTGGTGGAAAGGGAAGCAGAGACAGAGCGGA Direct Gain 0 0.916397005832027 NA NA prediction 0.832794011664055 Functional Gain - ERLIN2 ENSG00000147475 CDS Human protein_coding chr8:37607969 chr8:37607969 nonsynonymous SNV 0.975 3 21 hm7G_associated_SNPs_42374 0 0 1 0 2 ERLIN2 chr8:37607913 3'AG 37607913 Downstream 57bp 38955 chr8 37607969 37607969 1 + A G LUSC 37607969 + 37607949 37607989 41 GAAACAGAAGGTGGTGGAAAAGGAAGCAGAGACAGAGCGGA GAAACAGAAGGTGGTGGAAAGGGAAGCAGAGACAGAGCGGA Direct Gain 0 0.916397005832027 NA NA prediction 0.832794011664055 Functional Gain - ERLIN2 ENSG00000147475 CDS Human protein_coding chr8:37607969 chr8:37607969 nonsynonymous SNV 0.975 3 21 hm7G_associated_SNPs_42374 0 0 1 0 2 ERLIN2 chr8:37608004 5'GT 37608004 Upstream 36bp 38956 chr8 16963031 16963031 1 + A G HNSC 16963031 + 16963011 16963051 41 CTCATATTCTTTTACGATATACAAATGTGGAAAATACATCA CTCATATTCTTTTACGATATGCAAATGTGGAAAATACATCA Direct Gain 0 0.916392147490914 NA NA prediction 0.832784294981828 Functional Gain - MICU3 ENSG00000155970 CDS Human protein_coding chr8:16963031 chr8:16963031 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42375 0 0 0 0 1 MICU3 chr8:16963093 5'GT 16963093 Upstream 63bp 38957 chr2 103121731 103121731 1 + A G UCEC 103121731 + 103121711 103121751 41 AGAATCACAGCCTGCGCAGTAACAATGAAAAAGTACGTGGA AGAATCACAGCCTGCGCAGTGACAATGAAAAAGTACGTGGA Direct Gain 0 0.916391524719843 NA NA prediction 0.832783049439687 Functional Gain - SLC9A4 ENSG00000180251 CDS Human protein_coding chr2:103121731 chr2:103121731 synonymous SNV . 0 21 hm7G_associated_SNPs_42376 0 0 0 0 1 SLC9A4 chr2:103121713 3'AG 103121713 Downstream 19bp 38958 chr3 30715613 30715613 1 + A G STAD 30715613 + 30715593 30715633 41 ATAGGTGGGAACTGCAAGATACATGGCTCCAGAAGTCCTAG ATAGGTGGGAACTGCAAGATGCATGGCTCCAGAAGTCCTAG Direct Gain 0 0.916382312055047 NA NA prediction 0.832764624110094 Functional Gain - TGFBR2 ENSG00000163513 CDS Human protein_coding chr3:30715613 chr3:30715613 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42377 1 0 1 0 1 TGFBR2 chr3:30715597 3'AG 30715597 Downstream 17bp 38959 chr4 156825222 156825222 1 + A G BRCA 156825222 + 156825202 156825242 41 GCGAAGAAGACAAATCACAAACTGGTGTGAATAGAGCCAGC GCGAAGAAGACAAATCACAAGCTGGTGTGAATAGAGCCAGC Direct Gain 0 0.916349606436679 NA NA prediction 0.832699212873358 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156825222 chr4:156825222 nonsynonymous SNV 0.483 0 21 hm7G_associated_SNPs_42379 0 0 0 0 2 TDO2 chr4:156825170 3'AG 156825170 Downstream 53bp 38960 chr4 156825222 156825222 1 + A G BRCA 156825222 + 156825202 156825242 41 GCGAAGAAGACAAATCACAAACTGGTGTGAATAGAGCCAGC GCGAAGAAGACAAATCACAAGCTGGTGTGAATAGAGCCAGC Direct Gain 0 0.916349606436679 NA NA prediction 0.832699212873358 Functional Gain - TDO2 ENSG00000151790 CDS Human protein_coding chr4:156825222 chr4:156825222 nonsynonymous SNV 0.483 0 21 hm7G_associated_SNPs_42379 0 0 0 0 2 TDO2 chr4:156825275 5'GT 156825275 Upstream 54bp 38961 chr14 90734649 90734649 1 + A G STAD 90734649 + 90734629 90734669 41 TGGCTCTGAACTTATTCAGAAGTACCTAGGTGATGGGCCCA TGGCTCTGAACTTATTCAGAGGTACCTAGGTGATGGGCCCA Direct Gain 0 0.916343360569672 NA NA prediction 0.832686721139345 Functional Gain - PSMC1 ENSG00000100764 CDS Human protein_coding chr14:90734649 chr14:90734649 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42380 0 0 0 0 1 PSMC1 chr14:90734568 3'AG 90734568 Downstream 82bp 38962 chr3 49211828 49211828 1 + A G ACC 49211828 + 49211808 49211848 41 CCTGCACGGGAACAAGATCTATGTCCTGGGTAAGGGCCTGG CCTGCACGGGAACAAGATCTGTGTCCTGGGTAAGGGCCTGG Direct Gain 0 0.91632415449007 NA NA prediction 0.83264830898014 Functional Gain - KLHDC8B ENSG00000185909 CDS Human protein_coding chr3:49211828 chr3:49211828 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42381 0 0 0 0 1 KLHDC8B chr3:49211836 5'GT 49211836 Upstream 9bp 38963 chr5 79809527 79809527 1 + C G CESC 79809527 + 79809507 79809547 41 AAACAAACAGTGATAATACTCTACAGGAGTGGCTGACTGAA AAACAAACAGTGATAATACTGTACAGGAGTGGCTGACTGAA Direct Gain 0 0.916317276007171 NA NA prediction 0.832634552014342 Functional Gain - FAM151B ENSG00000152380 CDS Human protein_coding chr5:79809527 chr5:79809527 nonsynonymous SNV 0.892 4 21 hm7G_associated_SNPs_42382 0 0 0 1 1 FAM151B chr5:79809588 5'GT 79809588 Upstream 62bp 38964 chr10 17276765 17276765 1 + A G STAD 17276765 + 17276745 17276785 41 AAAGCAGGAGTCCACTGAGTACCGGAGACAGGTGCAGTCCC AAAGCAGGAGTCCACTGAGTGCCGGAGACAGGTGCAGTCCC Direct Gain 0 0.916315083721337 NA NA prediction 0.832630167442673 Functional Gain - VIM ENSG00000026025 CDS Human protein_coding chr10:17276765 chr10:17276765 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42383 0 0 1 0 2 VIM chr10:17276692 3'AG 17276692 Downstream 74bp 38965 chr10 17276765 17276765 1 + A G STAD 17276765 + 17276745 17276785 41 AAAGCAGGAGTCCACTGAGTACCGGAGACAGGTGCAGTCCC AAAGCAGGAGTCCACTGAGTGCCGGAGACAGGTGCAGTCCC Direct Gain 0 0.916315083721337 NA NA prediction 0.832630167442673 Functional Gain - VIM ENSG00000026025 CDS Human protein_coding chr10:17276765 chr10:17276765 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42383 0 0 1 0 2 VIM chr10:17276817 5'GT 17276817 Upstream 53bp 38966 chr4 187005261 187005261 1 + C G BLCA 187005261 + 187005241 187005281 41 GAAGCAATTGTTAACAGCATCAAAAGAAGCAGAAAAATTAT GAAGCAATTGTTAACAGCATGAAAAGAAGCAGAAAAATTAT Direct Gain 0 0.916313924065738 NA NA prediction 0.832627848131476 Functional Gain - TLR3 ENSG00000164342 CDS Human protein_coding chr4:187005261 chr4:187005261 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_42384 0 0 0 0 1 TLR3 chr4:187005326 5'GT 187005326 Upstream 66bp 38967 chr3 178947161 178947161 1 + T G UCEC 178947161 + 178947141 178947181 41 AATTCAGTGCAAAGGCGGCTTGAAAGGTGCACTGCAGTTCA AATTCAGTGCAAAGGCGGCTGGAAAGGTGCACTGCAGTTCA Direct Gain 0 0.916303394288857 NA NA prediction 0.832606788577714 Functional Gain - PIK3CA ENSG00000121879 CDS Human protein_coding chr3:178947161 chr3:178947161 nonsynonymous SNV 0.972 3 21 hm7G_associated_SNPs_42385 0 0 0 0 1 PIK3CA chr3:178947230 5'GT 178947230 Upstream 70bp 38968 chr8 195160 195160 1 + C G UCEC 195160 + 195140 195180 41 ATTCCCAAAACCAGAGATCTCATACTCAAGAGGATCCTTTT ATTCCCAAAACCAGAGATCTGATACTCAAGAGGATCCTTTT Direct Gain 0 0.91630208095782 NA NA prediction 0.83260416191564 Functional Gain - ZNF596 ENSG00000172748 CDS Human protein_coding chr8:195160 chr8:195160 nonsynonymous SNV 0.184 3 21 hm7G_associated_SNPs_42386 0 0 0 0 1 ZNF596;ZNF596 chr8:195154 3'AG 195154 Downstream 7bp 38969 chr13 113900346 113900346 1 + A G LIHC 113900346 + 113900326 113900366 41 AATGGGCTACTGGCCAACATACACGCCCATGGAAGTGCACT AATGGGCTACTGGCCAACATGCACGCCCATGGAAGTGCACT Direct Gain 0 0.916286023404947 NA NA prediction 0.832572046809894 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113900346 chr13:113900346 nonsynonymous SNV 0.940 4 21 hm7G_associated_SNPs_42388 0 0 1 0 2 CUL4A chr13:113900270 3'AG 113900270 Downstream 77bp 38970 chr13 113900346 113900346 1 + A G LIHC 113900346 + 113900326 113900366 41 AATGGGCTACTGGCCAACATACACGCCCATGGAAGTGCACT AATGGGCTACTGGCCAACATGCACGCCCATGGAAGTGCACT Direct Gain 0 0.916286023404947 NA NA prediction 0.832572046809894 Functional Gain - CUL4A ENSG00000139842 CDS Human protein_coding chr13:113900346 chr13:113900346 nonsynonymous SNV 0.940 4 21 hm7G_associated_SNPs_42388 0 0 1 0 2 CUL4A chr13:113900377 5'GT 113900377 Upstream 32bp 38971 chr9 80912185 80912185 1 + C G BLCA 80912185 + 80912165 80912205 41 TCCCGCCAAGCTGCCGCACTCAGTAAGTCCCCGCGAGCGGG TCCCGCCAAGCTGCCGCACTGAGTAAGTCCCCGCGAGCGGG Direct Gain 0 0.916284501614849 NA NA prediction 0.832569003229698 Functional Gain - PSAT1 ENSG00000135069 CDS Human protein_coding chr9:80912185 chr9:80912185 stopgain 0.770 0 21 hm7G_associated_SNPs_42389 0 0 1 0 1 PSAT1 chr9:80912186 5'GT 80912186 Upstream 2bp 38972 chr19 50000542 50000542 1 + A G COAD 50000542 + 50000522 50000562 41 CAAGGAGAAGCTCCCGCGGTACTACAAGAACATCGGTCTGG CAAGGAGAAGCTCCCGCGGTGCTACAAGAACATCGGTCTGG Direct Gain 0 0.9162813207935 NA NA prediction 0.832562641587 Functional Gain - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50000542 chr19:50000542 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_42390 0 0 1 0 2 RPS11 chr19:50000451 3'AG 50000451 Downstream 92bp 38973 chr19 50000542 50000542 1 + A G COAD 50000542 + 50000522 50000562 41 CAAGGAGAAGCTCCCGCGGTACTACAAGAACATCGGTCTGG CAAGGAGAAGCTCCCGCGGTGCTACAAGAACATCGGTCTGG Direct Gain 0 0.9162813207935 NA NA prediction 0.832562641587 Functional Gain - RPS11 ENSG00000142534 CDS Human protein_coding chr19:50000542 chr19:50000542 nonsynonymous SNV 0.995 3 21 hm7G_associated_SNPs_42390 0 0 1 0 2 RPS11 chr19:50000582 5'GT 50000582 Upstream 41bp 38974 chr10 106153132 106153132 1 + C G UCEC 106153132 + 106153112 106153152 41 AGTTAAAGATTATGATCCATCAGGTAGATGAGCTGAAAGAA AGTTAAAGATTATGATCCATGAGGTAGATGAGCTGAAAGAA Direct Gain 0 0.916261566248535 NA NA prediction 0.832523132497071 Functional Gain - CFAP58 ENSG00000120051 CDS Human protein_coding chr10:106153132 chr10:106153132 nonsynonymous SNV 0.995 2 21 hm7G_associated_SNPs_42391 0 0 0 0 1 CFAP58 chr10:106153087 3'AG 106153087 Downstream 46bp 38975 chr19 39395894 39395894 1 + T G BLCA 39395894 + 39395874 39395914 41 GACATCCACGGTGGAGAAGCTGTACGCAGCAGGCGCCGGGC GACATCCACGGTGGAGAAGCGGTACGCAGCAGGCGCCGGGC Direct Gain 0 0.916237309879149 NA NA prediction 0.832474619758297 Functional Gain - NFKBIB ENSG00000104825 CDS Human protein_coding chr19:39395894 chr19:39395894 nonsynonymous SNV 0.969 4 21 hm7G_associated_SNPs_42396 0 0 1 0 1 NFKBIB chr19:39395842 3'AG 39395842 Downstream 53bp 38976 chr12 28605468 28605468 1 + A G STAD 28605468 + 28605448 28605488 41 TCGTAGAAGAAGAAAGAAAAAATTTAGAAAAAGCGCATGCT TCGTAGAAGAAGAAAGAAAAGATTTAGAAAAAGCGCATGCT Direct Gain 0 0.916233940014885 NA NA prediction 0.832467880029771 Functional Gain - CCDC91 ENSG00000123106 CDS Human protein_coding chr12:28605468 chr12:28605468 nonsynonymous SNV 0.754 0 21 hm7G_associated_SNPs_42397 0 0 1 1 1 CCDC91 chr12:28605411 3'AG 28605411 Downstream 58bp 38977 chr6 2785299 2785299 1 + A G UCEC 2785299 + 2785279 2785319 41 CCCAAAGTCCATTGAGGTGTACAGCGCCTACAACAACGTCA CCCAAAGTCCATTGAGGTGTGCAGCGCCTACAACAACGTCA Direct Gain 0 0.916218454688045 NA NA prediction 0.83243690937609 Functional Gain - WRNIP1 ENSG00000124535 CDS Human protein_coding chr6:2785299 chr6:2785299 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_42399 0 0 1 0 1 WRNIP1 chr6:2785241 3'AG 2785241 Downstream 59bp 38978 chr4 69978228 69978228 1 + A G LUAD 69978228 + 69978208 69978248 41 TCAACATGATCAACCAGTGAAGCCCCTGGATCGAGCAGTCT TCAACATGATCAACCAGTGAGGCCCCTGGATCGAGCAGTCT Direct Gain 0 0.916177122864988 NA NA prediction 0.832354245729975 Functional Gain - UGT2B7 ENSG00000171234 CDS Human protein_coding chr4:69978228 chr4:69978228 nonsynonymous SNV 0.893 1 21 hm7G_associated_SNPs_42402 0 0 0 0 1 UGT2B7 chr4:69978175 3'AG 69978175 Downstream 54bp 38979 chrX 134990730 134990730 1 + T G BRCA 134990730 + 134990710 134990750 41 AATGTTCTATCCGGGCTTATTAATATGGCAGGAGCTAGTAT AATGTTCTATCCGGGCTTATGAATATGGCAGGAGCTAGTAT Direct Gain 0 0.91615196760123 NA NA prediction 0.83230393520246 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134990730 chrX:134990730 nonsynonymous SNV 0.005 1 21 hm7G_associated_SNPs_42403 0 0 0 0 2 SAGE1 chrX:134990636 3'AG 134990636 Downstream 95bp 38980 chrX 134990730 134990730 1 + T G BRCA 134990730 + 134990710 134990750 41 AATGTTCTATCCGGGCTTATTAATATGGCAGGAGCTAGTAT AATGTTCTATCCGGGCTTATGAATATGGCAGGAGCTAGTAT Direct Gain 0 0.91615196760123 NA NA prediction 0.83230393520246 Functional Gain - SAGE1 ENSG00000181433 CDS Human protein_coding chrX:134990730 chrX:134990730 nonsynonymous SNV 0.005 1 21 hm7G_associated_SNPs_42403 0 0 0 0 2 SAGE1 chrX:134990776 5'GT 134990776 Upstream 47bp 38981 chr1 183208652 183208652 1 + A G THCA 183208652 + 183208632 183208672 41 TGCTGATGCACAGAGGGCAAAGAATGGGGCCGGGGAGGCCC TGCTGATGCACAGAGGGCAAGGAATGGGGCCGGGGAGGCCC Direct Gain 0 0.916104384192618 NA NA prediction 0.832208768385237 Functional Gain - LAMC2 ENSG00000058085 CDS Human protein_coding chr1:183208652 chr1:183208652 nonsynonymous SNV 0.296 0 21 hm7G_associated_SNPs_42407 0 0 0 0 1 LAMC2 chr1:183208698 5'GT 183208698 Upstream 47bp 38982 chr20 43530211 43530211 1 + A G LIHC 43530211 + 43530191 43530231 41 GTGAGCTGGTACAGAAAGCCAAACTCGCTGAGCAGGCTGAG GTGAGCTGGTACAGAAAGCCGAACTCGCTGAGCAGGCTGAG Direct Gain 0 0.916092906471043 NA NA prediction 0.832185812942087 Functional Gain - YWHAB ENSG00000166913 CDS Human protein_coding chr20:43530211 chr20:43530211 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_42409 0 0 1 0 1 YWHAB chr20:43530172 3'AG 43530172 Downstream 40bp 38983 chr17 47899067 47899067 1 + T G UCEC 47899067 + 47899047 47899087 41 TTTTCTGGACCACAAGACATTATATTATGATGTGGAGCCCT TTTTCTGGACCACAAGACATGATATTATGATGTGGAGCCCT Direct Gain 0 0.916090084438924 NA NA prediction 0.832180168877848 Functional Gain - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47899067 chr17:47899067 stopgain 0.955 1 21 hm7G_associated_SNPs_42410 0 0 0 0 2 KAT7 chr17:47899012 3'AG 47899012 Downstream 56bp 38984 chr17 47899067 47899067 1 + T G UCEC 47899067 + 47899047 47899087 41 TTTTCTGGACCACAAGACATTATATTATGATGTGGAGCCCT TTTTCTGGACCACAAGACATGATATTATGATGTGGAGCCCT Direct Gain 0 0.916090084438924 NA NA prediction 0.832180168877848 Functional Gain - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47899067 chr17:47899067 stopgain 0.955 1 21 hm7G_associated_SNPs_42410 0 0 0 0 2 KAT7 chr17:47899152 5'GT 47899152 Upstream 86bp 38985 chr12 110573210 110573210 1 + C G rs79498242 110573210 + 110573190 110573230 41 AAAAAGAGAGAGAAGAATATCTTGCACAACAGAAACAGGAA AAAAAGAGAGAGAAGAATATGTTGCACAACAGAAACAGGAA Direct Gain 0 0.916089984178854 NA NA prediction 0.832179968357708 Functional Gain - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110573210 chr12:110573210 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_42411 0 0 1 0 2 IFT81 chr12:110573132 3'AG 110573132 Downstream 79bp 38986 chr12 110573210 110573210 1 + C G rs79498242 110573210 + 110573190 110573230 41 AAAAAGAGAGAGAAGAATATCTTGCACAACAGAAACAGGAA AAAAAGAGAGAGAAGAATATGTTGCACAACAGAAACAGGAA Direct Gain 0 0.916089984178854 NA NA prediction 0.832179968357708 Functional Gain - IFT81 ENSG00000122970 CDS Human protein_coding chr12:110573210 chr12:110573210 nonsynonymous SNV 0.994 3 21 hm7G_associated_SNPs_42411 0 0 1 0 2 IFT81 chr12:110573242 5'GT 110573242 Upstream 33bp 38987 chr1 100740453 100740453 1 + T G UCEC 100740453 + 100740433 100740473 41 AACAATTGAACCCTATAAATTTAACTGAGCGTGGCTGTGTG AACAATTGAACCCTATAAATGTAACTGAGCGTGGCTGTGTG Direct Gain 0 0.916074897381499 NA NA prediction 0.832149794762998 Functional Gain - RTCA ENSG00000137996 CDS Human protein_coding chr1:100740453 chr1:100740453 nonsynonymous SNV 0.979 1 21 hm7G_associated_SNPs_42413 0 0 1 0 2 RTCA chr1:100740380 3'AG 100740380 Downstream 74bp 38988 chr1 100740453 100740453 1 + T G UCEC 100740453 + 100740433 100740473 41 AACAATTGAACCCTATAAATTTAACTGAGCGTGGCTGTGTG AACAATTGAACCCTATAAATGTAACTGAGCGTGGCTGTGTG Direct Gain 0 0.916074897381499 NA NA prediction 0.832149794762998 Functional Gain - RTCA ENSG00000137996 CDS Human protein_coding chr1:100740453 chr1:100740453 nonsynonymous SNV 0.979 1 21 hm7G_associated_SNPs_42413 0 0 1 0 2 RTCA chr1:100740521 5'GT 100740521 Upstream 69bp 38989 chr12 56436379 56436379 1 + C G HNSC 56436379 + 56436359 56436399 41 GACATTTCTGAAGCGAGCGTCTTCGATGGTAAGTGGGTCAC GACATTTCTGAAGCGAGCGTGTTCGATGGTAAGTGGGTCAC Direct Gain 0 0.916068299988558 NA NA prediction 0.832136599977115 Functional Gain - RPS26 ENSG00000197728 CDS Human protein_coding chr12:56436379 chr12:56436379 synonymous SNV . 0 21 hm7G_associated_SNPs_42414 0 0 1 0 1 RPS26 chr12:56436386 5'GT 56436386 Upstream 8bp 38990 chr8 23115855 23115855 1 + C G SARC 23115855 + 23115835 23115875 41 GCCTCCAGGCACTGAGGTCTCTCAAGGCCAAGCAACGGACA GCCTCCAGGCACTGAGGTCTGTCAAGGCCAAGCAACGGACA Direct Gain 0 0.916049771935169 NA NA prediction 0.832099543870338 Functional Gain - CHMP7 ENSG00000147457 CDS Human protein_coding chr8:23115855 chr8:23115855 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_42416 0 0 0 0 1 CHMP7 chr8:23115843 3'AG 23115843 Downstream 13bp 38991 chr1 45219450 45219450 1 + A G UCEC 45219450 + 45219430 45219470 41 GGAAGTGGAAAAAATGAAGAACAAGCGAGAAGAGAAGAAGG GGAAGTGGAAAAAATGAAGAGCAAGCGAGAAGAGAAGAAGG Direct Gain 0 0.916030853208386 NA NA prediction 0.832061706416773 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45219450 chr1:45219450 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42418 0 0 1 0 2 KIF2C chr1:45219405 3'AG 45219405 Downstream 46bp 38992 chr1 45219450 45219450 1 + A G UCEC 45219450 + 45219430 45219470 41 GGAAGTGGAAAAAATGAAGAACAAGCGAGAAGAGAAGAAGG GGAAGTGGAAAAAATGAAGAGCAAGCGAGAAGAGAAGAAGG Direct Gain 0 0.916030853208386 NA NA prediction 0.832061706416773 Functional Gain - KIF2C ENSG00000142945 CDS Human protein_coding chr1:45219450 chr1:45219450 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42418 0 0 1 0 2 KIF2C chr1:45219505 5'GT 45219505 Upstream 56bp 38993 chr1 220955184 220955184 1 + T G LUSC 220955184 + 220955164 220955204 41 CTCCACTTTTTGGGATCTATTATTCAGTGGAAAAAATTGGA CTCCACTTTTTGGGATCTATGATTCAGTGGAAAAAATTGGA Direct Gain 0 0.916019437566322 NA NA prediction 0.832038875132645 Functional Gain - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220955184 chr1:220955184 nonsynonymous SNV 0.937 1 21 hm7G_associated_SNPs_42419 0 0 1 0 2 MARC2 chr1:220955120 3'AG 220955120 Downstream 65bp 38994 chr1 220955184 220955184 1 + T G LUSC 220955184 + 220955164 220955204 41 CTCCACTTTTTGGGATCTATTATTCAGTGGAAAAAATTGGA CTCCACTTTTTGGGATCTATGATTCAGTGGAAAAAATTGGA Direct Gain 0 0.916019437566322 NA NA prediction 0.832038875132645 Functional Gain - MARC2 ENSG00000117791 CDS Human protein_coding chr1:220955184 chr1:220955184 nonsynonymous SNV 0.937 1 21 hm7G_associated_SNPs_42419 0 0 1 0 2 MARC2 chr1:220955274 5'GT 220955274 Upstream 91bp 38995 chr1 170135727 170135727 1 + T G UCEC 170135727 + 170135707 170135747 41 AACACGTCTTATTGCCTGTTTTCAACAGTGTGGAGCTGGTG AACACGTCTTATTGCCTGTTGTCAACAGTGTGGAGCTGGTG Direct Gain 0 0.916003816586503 NA NA prediction 0.832007633173007 Functional Gain - METTL11B ENSG00000203740 CDS Human protein_coding chr1:170135727 chr1:170135727 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42420 0 0 0 0 1 METTL11B chr1:170135643 3'AG 170135643 Downstream 85bp 38996 chr9 131296042 131296042 1 + A G SARC 131296042 + 131296022 131296062 41 CCACCTCTATGTTCTCAGAAACAAGGCGAGGAGGAAGTGGC CCACCTCTATGTTCTCAGAAGCAAGGCGAGGAGGAAGTGGC Direct Gain 0 0.915999384829048 NA NA prediction 0.831998769658096 Functional Gain - GLE1 ENSG00000119392 CDS Human protein_coding chr9:131296042 chr9:131296042 synonymous SNV . 0 21 hm7G_associated_SNPs_42421 0 0 1 0 1 GLE1 chr9:131296040 3'AG 131296040 Downstream 3bp 38997 chr7 105205897 105205897 1 + A G BRCA 105205897 + 105205877 105205917 41 GAAGCTGGATGTATACATCTACCAAGAAGTAAGTAAGAATA GAAGCTGGATGTATACATCTGCCAAGAAGTAAGTAAGAATA Direct Gain 0 0.91594911959228 NA NA prediction 0.831898239184559 Functional Gain - RINT1 ENSG00000135249 CDS Human protein_coding chr7:105205897 chr7:105205897 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42426 0 0 1 0 1 RINT1 chr7:105205904 5'GT 105205904 Upstream 8bp 38998 chr5 157158543 157158543 1 + A G LIHC 157158543 + 157158523 157158563 41 ATTGGGGGCGACCATGGCAAAAAGCAAGTTCGAGTACGTGA ATTGGGGGCGACCATGGCAAGAAGCAAGTTCGAGTACGTGA Direct Gain 0 0.915924905049549 NA NA prediction 0.831849810099099 Functional Gain - THG1L ENSG00000113272 CDS Human protein_coding chr5:157158543 chr5:157158543 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_42427 0 0 1 0 1 THG1L chr5:157158639 5'GT 157158639 Upstream 97bp 38999 chr6 160858109 160858109 1 + T G STAD 160858109 + 160858089 160858129 41 CCTCTATATAGACTTTTTCATCTCGGGCGTGGTGGAACTGC CCTCTATATAGACTTTTTCAGCTCGGGCGTGGTGGAACTGC Direct Gain 0 0.915924684526315 NA NA prediction 0.831849369052631 Functional Gain - SLC22A3 ENSG00000146477 CDS Human protein_coding chr6:160858109 chr6:160858109 nonsynonymous SNV 0.992 4 21 hm7G_associated_SNPs_42428 0 0 0 1 1 SLC22A3 chr6:160858029 3'AG 160858029 Downstream 81bp 39000 chr11 89891338 89891338 1 + A G SKCM 89891338 + 89891318 89891358 41 ACTTTCAGACTTGATGTTGAAGAAGGAGTGGGAATCCCCCG ACTTTCAGACTTGATGTTGAGGAAGGAGTGGGAATCCCCCG Direct Gain 0 0.915915782467869 NA NA prediction 0.831831564935738 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891338 chr11:89891338 synonymous SNV . 0 21 hm7G_associated_SNPs_42429 0 0 0 0 2 NAALAD2 chr11:89891313 3'AG 89891313 Downstream 26bp 39001 chr11 89891338 89891338 1 + A G SKCM 89891338 + 89891318 89891358 41 ACTTTCAGACTTGATGTTGAAGAAGGAGTGGGAATCCCCCG ACTTTCAGACTTGATGTTGAGGAAGGAGTGGGAATCCCCCG Direct Gain 0 0.915915782467869 NA NA prediction 0.831831564935738 Functional Gain - NAALAD2 ENSG00000077616 CDS Human protein_coding chr11:89891338 chr11:89891338 synonymous SNV . 0 21 hm7G_associated_SNPs_42429 0 0 0 0 2 NAALAD2 chr11:89891406 5'GT 89891406 Upstream 69bp 39002 chr19 10822906 10822906 1 + T G HNSC 10822906 + 10822886 10822926 41 GGGTGAGAGCAAGTCGCAGTTCTGGCGGATGGTGGCGCTGA GGGTGAGAGCAAGTCGCAGTGCTGGCGGATGGTGGCGCTGA Direct Gain 0 0.915914339134228 NA NA prediction 0.831828678268455 Functional Gain - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10822906 chr19:10822906 nonsynonymous SNV 0.972 3 21 hm7G_associated_SNPs_42430 0 0 1 0 2 QTRT1 chr19:10822837 3'AG 10822837 Downstream 70bp 39003 chr19 10822906 10822906 1 + T G HNSC 10822906 + 10822886 10822926 41 GGGTGAGAGCAAGTCGCAGTTCTGGCGGATGGTGGCGCTGA GGGTGAGAGCAAGTCGCAGTGCTGGCGGATGGTGGCGCTGA Direct Gain 0 0.915914339134228 NA NA prediction 0.831828678268455 Functional Gain - QTRT1 ENSG00000213339 CDS Human protein_coding chr19:10822906 chr19:10822906 nonsynonymous SNV 0.972 3 21 hm7G_associated_SNPs_42430 0 0 1 0 2 QTRT1 chr19:10822975 5'GT 10822975 Upstream 70bp 39004 chr7 105207932 105207932 1 - T C rs115463820 105207932 - 105207912 105207952 41 TTTTTGTTTCCTTAGGAACAAGAGGATGAAGGAAATATGGT TTTTTGTTTCCTTAGGAACAGGAGGATGAAGGAAATATGGT Direct Gain 0 0.915908314618132 NA NA prediction 0.831816629236264 Functional Gain - EFCAB10 ENSG00000185055 CDS Human protein_coding chr7:105207932 chr7:105207932 nonsynonymous SNV 0.951 0 21 hm7G_associated_SNPs_42431 0 0 1 0 2 EFCAB10 chr7:105207914 5'GT 105207914 Upstream 19bp 39005 chr7 105207932 105207932 1 - T C rs115463820 105207932 - 105207912 105207952 41 TTTTTGTTTCCTTAGGAACAAGAGGATGAAGGAAATATGGT TTTTTGTTTCCTTAGGAACAGGAGGATGAAGGAAATATGGT Direct Gain 0 0.915908314618132 NA NA prediction 0.831816629236264 Functional Gain - EFCAB10 ENSG00000185055 CDS Human protein_coding chr7:105207932 chr7:105207932 nonsynonymous SNV 0.951 0 21 hm7G_associated_SNPs_42431 0 0 1 0 2 EFCAB10 chr7:105207937 3'AG 105207937 Downstream 6bp 39006 chr6 130374062 130374062 1 + A G HNSC 130374062 + 130374042 130374082 41 AGGAAGAAGATCCTAAGTGTAGTCGGAAGAAAAAACCAAAA AGGAAGAAGATCCTAAGTGTGGTCGGAAGAAAAAACCAAAA Direct Gain 0 0.915885214148821 NA NA prediction 0.831770428297642 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130374062 chr6:130374062 nonsynonymous SNV 0.988 0 21 hm7G_associated_SNPs_42434 0 0 0 0 2 L3MBTL3 chr6:130374004 3'AG 130374004 Downstream 59bp 39007 chr6 130374062 130374062 1 + A G HNSC 130374062 + 130374042 130374082 41 AGGAAGAAGATCCTAAGTGTAGTCGGAAGAAAAAACCAAAA AGGAAGAAGATCCTAAGTGTGGTCGGAAGAAAAAACCAAAA Direct Gain 0 0.915885214148821 NA NA prediction 0.831770428297642 Functional Gain - L3MBTL3 ENSG00000198945 CDS Human protein_coding chr6:130374062 chr6:130374062 nonsynonymous SNV 0.988 0 21 hm7G_associated_SNPs_42434 0 0 0 0 2 L3MBTL3 chr6:130374136 5'GT 130374136 Upstream 75bp 39008 chr2 139316637 139316637 1 + A G UCEC 139316637 + 139316617 139316657 41 ACATATCAGGACATACTAATACAAATACTTTGAAGGTGCCT ACATATCAGGACATACTAATGCAAATACTTTGAAGGTGCCT Direct Gain 0 0.915882392864239 NA NA prediction 0.831764785728478 Functional Gain - SPOPL ENSG00000144228 CDS Human protein_coding chr2:139316637 chr2:139316637 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42436 0 0 1 0 1 SPOPL chr2:139316592 3'AG 139316592 Downstream 46bp 39009 chr5 74066480 74066480 1 + A G UCEC 74066480 + 74066460 74066500 41 AATGGGAAGTCCCTCTGCCTAAAGTACGTGCCCAGGGAGAA AATGGGAAGTCCCTCTGCCTGAAGTACGTGCCCAGGGAGAA Direct Gain 0 0.915878223682723 NA NA prediction 0.831756447365445 Functional Gain - NSA2 ENSG00000164346 CDS Human protein_coding chr5:74066480 chr5:74066480 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42437 0 0 1 0 1 NSA2 chr5:74066456 3'AG 74066456 Downstream 25bp 39010 chr11 56950151 56950151 1 + A G STAD 56950151 + 56950131 56950171 41 GAAACCGGATCCAGCGCTGTACAGCAGGTAATAGAGGGGCA GAAACCGGATCCAGCGCTGTGCAGCAGGTAATAGAGGGGCA Direct Gain 0 0.915866401870169 NA NA prediction 0.831732803740337 Functional Gain - LRRC55 ENSG00000183908 CDS Human protein_coding chr11:56950151 chr11:56950151 nonsynonymous SNV 0.964 1 21 hm7G_associated_SNPs_42438 0 0 0 0 1 LRRC55 chr11:56950157 5'GT 56950157 Upstream 7bp 39011 chr5 1814523 1814523 1 + C G rs192286856 1814523 + 1814503 1814543 41 GGTGGAGACTCGGGTGATAGCGTGCGATGGCGGCGGGGGAG GGTGGAGACTCGGGTGATAGGGTGCGATGGCGGCGGGGGAG Direct Gain 0 0.915857092285863 NA NA prediction 0.831714184571726 Functional Gain - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1814523 chr5:1814523 nonsynonymous SNV 0.004 0 21 hm7G_associated_SNPs_42441 0 0 1 0 2 NDUFS6 chr5:1814453 3'AG 1814453 Downstream 71bp 39012 chr5 1814523 1814523 1 + C G rs192286856 1814523 + 1814503 1814543 41 GGTGGAGACTCGGGTGATAGCGTGCGATGGCGGCGGGGGAG GGTGGAGACTCGGGTGATAGGGTGCGATGGCGGCGGGGGAG Direct Gain 0 0.915857092285863 NA NA prediction 0.831714184571726 Functional Gain - NDUFS6 ENSG00000145494 CDS Human protein_coding chr5:1814523 chr5:1814523 nonsynonymous SNV 0.004 0 21 hm7G_associated_SNPs_42441 0 0 1 0 2 NDUFS6 chr5:1814575 5'GT 1814575 Upstream 53bp 39013 chr7 74310302 74310302 1 + A G rs3209662 74310302 + 74310282 74310322 41 CAGATTTGCTCTGGGCCGGTAGTACTGAGTCTAAGCACTGC CAGATTTGCTCTGGGCCGGTGGTACTGAGTCTAAGCACTGC Direct Gain 0 0.915851176367638 NA NA prediction 0.831702352735275 Functional Gain - PMS2P5 ENSG00000123965 ncRNA_exonic Human unprocessed_pseudogene chr7:74310302 chr7:74310302 . . 0 21 hm7G_associated_SNPs_42443 0 0 0 0 3 PMS2P5 chr7:74310233 3'AG 74310233 Downstream 70bp 39014 chr7 74310302 74310302 1 + A G rs3209662 74310302 + 74310282 74310322 41 CAGATTTGCTCTGGGCCGGTAGTACTGAGTCTAAGCACTGC CAGATTTGCTCTGGGCCGGTGGTACTGAGTCTAAGCACTGC Direct Gain 0 0.915851176367638 NA NA prediction 0.831702352735275 Functional Gain - PMS2P5 ENSG00000123965 ncRNA_exonic Human unprocessed_pseudogene chr7:74310302 chr7:74310302 . . 0 21 hm7G_associated_SNPs_42443 0 0 0 0 3 PMS2P5 chr7:74310238 3'AG 74310238 Downstream 65bp 39015 chr7 74310302 74310302 1 + A G rs3209662 74310302 + 74310282 74310322 41 CAGATTTGCTCTGGGCCGGTAGTACTGAGTCTAAGCACTGC CAGATTTGCTCTGGGCCGGTGGTACTGAGTCTAAGCACTGC Direct Gain 0 0.915851176367638 NA NA prediction 0.831702352735275 Functional Gain - PMS2P5 ENSG00000123965 ncRNA_exonic Human unprocessed_pseudogene chr7:74310302 chr7:74310302 . . 0 21 hm7G_associated_SNPs_42443 0 0 0 0 3 PMS2P5 chr7:74310372 5'GT 74310372 Upstream 71bp 39016 chr5 169025560 169025560 1 + T G OV 169025560 + 169025540 169025580 41 ACCTATTATACAGATTTACTTCAGATGAAGCTGGATAACTT ACCTATTATACAGATTTACTGCAGATGAAGCTGGATAACTT Direct Gain 0 0.915839990193354 NA NA prediction 0.831679980386709 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169025560 chr5:169025560 synonymous SNV . 0 21 hm7G_associated_SNPs_42444 0 0 1 0 2 SPDL1 chr5:169025480 3'AG 169025480 Downstream 81bp 39017 chr5 169025560 169025560 1 + T G OV 169025560 + 169025540 169025580 41 ACCTATTATACAGATTTACTTCAGATGAAGCTGGATAACTT ACCTATTATACAGATTTACTGCAGATGAAGCTGGATAACTT Direct Gain 0 0.915839990193354 NA NA prediction 0.831679980386709 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169025560 chr5:169025560 synonymous SNV . 0 21 hm7G_associated_SNPs_42444 0 0 1 0 2 SPDL1 chr5:169025583 5'GT 169025583 Upstream 24bp 39018 chr18 2610840 2610840 1 + A G UCEC 2610840 + 2610820 2610860 41 GTCTGTTAGAGATGGTTGCTACACATGTTGGGTCTGTAGAG GTCTGTTAGAGATGGTTGCTGCACATGTTGGGTCTGTAGAG Direct Gain 0 0.915827563918117 NA NA prediction 0.831655127836235 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2610840 chr18:2610840 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42446 0 0 1 0 2 NDC80 chr18:2610758 3'AG 2610758 Downstream 83bp 39019 chr18 2610840 2610840 1 + A G UCEC 2610840 + 2610820 2610860 41 GTCTGTTAGAGATGGTTGCTACACATGTTGGGTCTGTAGAG GTCTGTTAGAGATGGTTGCTGCACATGTTGGGTCTGTAGAG Direct Gain 0 0.915827563918117 NA NA prediction 0.831655127836235 Functional Gain - NDC80 ENSG00000080986 CDS Human protein_coding chr18:2610840 chr18:2610840 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42446 0 0 1 0 2 NDC80 chr18:2610860 5'GT 2610860 Upstream 21bp 39020 chr1 11771988 11771988 1 + A G rs17037327 11771988 + 11771968 11772008 41 TGGACCGATTATGAAGACTTAAAACCTGATGGTTGGCCCTC TGGACCGATTATGAAGACTTGAAACCTGATGGTTGGCCCTC Direct Gain 0 0.91582702242999 NA NA prediction 0.83165404485998 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11771988 chr1:11771988 synonymous SNV . 0 21 hm7G_associated_SNPs_42447 0 0 0 0 2 DRAXIN chr1:11771908 3'AG 11771908 Downstream 81bp 39021 chr1 11771988 11771988 1 + A G rs17037327 11771988 + 11771968 11772008 41 TGGACCGATTATGAAGACTTAAAACCTGATGGTTGGCCCTC TGGACCGATTATGAAGACTTGAAACCTGATGGTTGGCCCTC Direct Gain 0 0.91582702242999 NA NA prediction 0.83165404485998 Functional Gain - DRAXIN ENSG00000162490 CDS Human protein_coding chr1:11771988 chr1:11771988 synonymous SNV . 0 21 hm7G_associated_SNPs_42447 0 0 0 0 2 DRAXIN chr1:11772022 5'GT 11772022 Upstream 35bp 39022 chr19 56204330 56204330 1 + C G rs202102235 56204330 + 56204310 56204350 41 CCCACAGCAGCCGGGGGATTCGACACGGAGCCCGACGAGTT CCCACAGCAGCCGGGGGATTGGACACGGAGCCCGACGAGTT Direct Gain 0 0.915821542081733 NA NA prediction 0.831643084163466 Functional Gain - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56204330 chr19:56204330 nonsynonymous SNV 0.012 0 21 hm7G_associated_SNPs_42448 0 0 0 0 3 EPN1 chr19:56204317 3'AG 56204317 Downstream 14bp 39023 chr19 56204330 56204330 1 + C G rs202102235 56204330 + 56204310 56204350 41 CCCACAGCAGCCGGGGGATTCGACACGGAGCCCGACGAGTT CCCACAGCAGCCGGGGGATTGGACACGGAGCCCGACGAGTT Direct Gain 0 0.915821542081733 NA NA prediction 0.831643084163466 Functional Gain - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56204330 chr19:56204330 nonsynonymous SNV 0.012 0 21 hm7G_associated_SNPs_42448 0 0 0 0 3 EPN1 chr19:56204320 3'AG 56204320 Downstream 11bp 39024 chr19 56204330 56204330 1 + C G rs202102235 56204330 + 56204310 56204350 41 CCCACAGCAGCCGGGGGATTCGACACGGAGCCCGACGAGTT CCCACAGCAGCCGGGGGATTGGACACGGAGCCCGACGAGTT Direct Gain 0 0.915821542081733 NA NA prediction 0.831643084163466 Functional Gain - EPN1 ENSG00000063245 CDS Human protein_coding chr19:56204330 chr19:56204330 nonsynonymous SNV 0.012 0 21 hm7G_associated_SNPs_42448 0 0 0 0 3 EPN1 chr19:56204403 5'GT 56204403 Upstream 74bp 39025 chr4 40337915 40337915 1 + C G HNSC 40337915 + 40337895 40337935 41 TTGAAGATTATTCTAATGCTCTTCGTCCAGTGGAAGATACA TTGAAGATTATTCTAATGCTGTTCGTCCAGTGGAAGATACA Direct Gain 0 0.915802897868288 NA NA prediction 0.831605795736575 Functional Gain - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40337915 chr4:40337915 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_42449 0 0 0 0 2 CHRNA9 chr4:40337844 3'AG 40337844 Downstream 72bp 39026 chr4 40337915 40337915 1 + C G HNSC 40337915 + 40337895 40337935 41 TTGAAGATTATTCTAATGCTCTTCGTCCAGTGGAAGATACA TTGAAGATTATTCTAATGCTGTTCGTCCAGTGGAAGATACA Direct Gain 0 0.915802897868288 NA NA prediction 0.831605795736575 Functional Gain - CHRNA9 ENSG00000174343 CDS Human protein_coding chr4:40337915 chr4:40337915 nonsynonymous SNV 0.993 3 21 hm7G_associated_SNPs_42449 0 0 0 0 2 CHRNA9 chr4:40337989 5'GT 40337989 Upstream 75bp 39027 chrX 129053461 129053461 1 + A G STAD 129053461 + 129053441 129053481 41 GAGAGAAGAAAATCAAAAGTAAAAAGTAAGGAGGCCCCTGT GAGAGAAGAAAATCAAAAGTGAAAAGTAAGGAGGCCCCTGT Direct Gain 0 0.915797434151595 NA NA prediction 0.831594868303189 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129053461 chrX:129053461 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_42450 0 0 1 0 2 UTP14A chrX:129053371 3'AG 129053371 Downstream 91bp 39028 chrX 129053461 129053461 1 + A G STAD 129053461 + 129053441 129053481 41 GAGAGAAGAAAATCAAAAGTAAAAAGTAAGGAGGCCCCTGT GAGAGAAGAAAATCAAAAGTGAAAAGTAAGGAGGCCCCTGT Direct Gain 0 0.915797434151595 NA NA prediction 0.831594868303189 Functional Gain - UTP14A ENSG00000156697 CDS Human protein_coding chrX:129053461 chrX:129053461 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_42450 0 0 1 0 2 UTP14A chrX:129053465 5'GT 129053465 Upstream 5bp 39029 chr19 49409111 49409111 1 + C G LUSC 49409111 + 49409091 49409131 41 TCACGGCTGCGGATGCTGCTCAAGGCCAAGATGGACGCCGA TCACGGCTGCGGATGCTGCTGAAGGCCAAGATGGACGCCGA Direct Gain 0 0.915784151990717 NA NA prediction 0.831568303981434 Functional Gain - NUCB1 ENSG00000104805 CDS Human protein_coding chr19:49409111 chr19:49409111 synonymous SNV . 0 21 hm7G_associated_SNPs_42451 0 0 1 0 1 NUCB1 chr19:49409142 5'GT 49409142 Upstream 32bp 39030 chr22 41865168 41865168 1 + A G BLCA 41865168 + 41865148 41865188 41 AAAATGGCGCCCTACAGCCTACTGGTGACTCGGCTGCAGGT AAAATGGCGCCCTACAGCCTGCTGGTGACTCGGCTGCAGGT Direct Gain 0 0.915739199699646 NA NA prediction 0.831478399399292 Functional Gain - ACO2 ENSG00000100412 CDS Human protein_coding chr22:41865168 chr22:41865168 synonymous SNV . 0 21 hm7G_associated_SNPs_42454 0 0 1 0 1 ACO2 chr22:41865186 5'GT 41865186 Upstream 19bp 39031 chr10 101117306 101117306 1 + T G SKCM 101117306 + 101117286 101117326 41 ATTGTCCAGCGGGTGAATAATGAGGGAGAAGGGGACCCTTT ATTGTCCAGCGGGTGAATAAGGAGGGAGAAGGGGACCCTTT Direct Gain 0 0.915725918506356 NA NA prediction 0.831451837012711 Functional Gain - CNNM1 ENSG00000119946 CDS Human protein_coding chr10:101117306 chr10:101117306 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_42459 0 0 1 0 1 CNNM1 chr10:101117269 3'AG 101117269 Downstream 38bp 39032 chr1 99150515 99150515 1 + C G BLCA 99150515 + 99150495 99150535 41 TTATCAATGATAAACCAAATCAAGTTTGAGGATGAACCAGA TTATCAATGATAAACCAAATGAAGTTTGAGGATGAACCAGA Direct Gain 0 0.915724347491413 NA NA prediction 0.831448694982826 Functional Gain - SNX7 ENSG00000162627 CDS Human protein_coding chr1:99150515 chr1:99150515 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42460 0 0 1 0 1 SNX7 chr1:99150441 3'AG 99150441 Downstream 75bp 39033 chr20 2398128 2398128 1 + C G OV 2398128 + 2398108 2398148 41 CGGGCCCAGCGGGTGAGGGTCAACCTGAGCGGTGCCACCAT CGGGCCCAGCGGGTGAGGGTGAACCTGAGCGGTGCCACCAT Direct Gain 0 0.915724233416645 NA NA prediction 0.83144846683329 Functional Gain - TGM6 ENSG00000166948 CDS Human protein_coding chr20:2398128 chr20:2398128 synonymous SNV . 0 21 hm7G_associated_SNPs_42461 0 0 0 0 1 TGM6 chr20:2398219 5'GT 2398219 Upstream 92bp 39034 chr3 179336307 179336307 1 + A G PAAD 179336307 + 179336287 179336327 41 GAAGCTGAAAAGGCTGAATTACGGTAGGAAAAACGAGGGGG GAAGCTGAAAAGGCTGAATTGCGGTAGGAAAAACGAGGGGG Direct Gain 0 0.915690518082815 NA NA prediction 0.83138103616563 Functional Gain - NDUFB5 ENSG00000136521 CDS Human protein_coding chr3:179336307 chr3:179336307 synonymous SNV . 0 21 hm7G_associated_SNPs_42466 0 0 1 3 1 NDUFB5 chr3:179336309 5'GT 179336309 Upstream 3bp 39035 chr20 31436533 31436533 1 + A G UCEC 31436533 + 31436513 31436553 41 GGAGGAGCAAGAAGAGTATTAACAGCCTGGACCAGCAGAGC GGAGGAGCAAGAAGAGTATTGACAGCCTGGACCAGCAGAGC Direct Gain 0 0.915679996412594 NA NA prediction 0.831359992825187 Functional Gain - MAPRE1 ENSG00000101367 CDS Human protein_coding chr20:31436533 chr20:31436533 synonymous SNV . 0 21 hm7G_associated_SNPs_42467 0 0 1 0 1 MAPRE1 chr20:31436478 3'AG 31436478 Downstream 56bp 39036 chr2 162036184 162036184 1 + A G UCEC 162036184 + 162036164 162036204 41 ACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATA ACGAAGAGGAATGGATAAAAGCATTGGCGAGCAACTCAATA Direct Gain 0 0.915677931059822 NA NA prediction 0.831355862119643 Functional Gain - TANK ENSG00000136560 CDS Human protein_coding chr2:162036184 chr2:162036184 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42468 0 0 1 0 2 TANK chr2:162036125 3'AG 162036125 Downstream 60bp 39037 chr2 162036184 162036184 1 + A G UCEC 162036184 + 162036164 162036204 41 ACGAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATA ACGAAGAGGAATGGATAAAAGCATTGGCGAGCAACTCAATA Direct Gain 0 0.915677931059822 NA NA prediction 0.831355862119643 Functional Gain - TANK ENSG00000136560 CDS Human protein_coding chr2:162036184 chr2:162036184 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42468 0 0 1 0 2 TANK chr2:162036272 5'GT 162036272 Upstream 89bp 39038 chr5 43246074 43246074 1 + C G HNSC 43246074 + 43246054 43246094 41 GAAGGTGGTGAGGGAGATCACGCTGGGGAAACGGATAGGCT GAAGGTGGTGAGGGAGATCAGGCTGGGGAAACGGATAGGCT Direct Gain 0 0.915640260187728 NA NA prediction 0.831280520375457 Functional Gain - NIM1K ENSG00000177453 CDS Human protein_coding chr5:43246074 chr5:43246074 nonsynonymous SNV 0.970 2 21 hm7G_associated_SNPs_42470 0 0 0 0 1 NIM1K chr5:43246169 5'GT 43246169 Upstream 96bp 39039 chr5 169023670 169023670 1 + C G CESC 169023670 + 169023650 169023690 41 AGAATGGTGAAATAAAACATCTTTTAGGTGAAATTAGAAAT AGAATGGTGAAATAAAACATGTTTTAGGTGAAATTAGAAAT Direct Gain 0 0.915614279888904 NA NA prediction 0.831228559777808 Functional Gain - SPDL1 ENSG00000040275 CDS Human protein_coding chr5:169023670 chr5:169023670 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42473 0 0 1 0 1 SPDL1 chr5:169023705 5'GT 169023705 Upstream 36bp 39040 chr17 9546391 9546391 1 + C G STAD 9546391 + 9546371 9546411 41 TTATAATGAGGGTGAAGTGACTCACGTTGGGGTGGGACACA TTATAATGAGGGTGAAGTGAGTCACGTTGGGGTGGGACACA Direct Gain 0 0.91559488636082 NA NA prediction 0.831189772721639 Functional Gain - CFAP52 ENSG00000166596 CDS Human protein_coding chr17:9546391 chr17:9546391 nonsynonymous SNV 0.999 2 21 hm7G_associated_SNPs_42475 0 0 0 0 1 CFAP52 chr17:9546340 3'AG 9546340 Downstream 52bp 39041 chr5 145878238 145878238 1 + A G SKCM 145878238 + 145878218 145878258 41 AGAAAGAAGATTCGAAGACCAGAGGTGAGAAGGTAAGATGG AGAAAGAAGATTCGAAGACCGGAGGTGAGAAGGTAAGATGG Direct Gain 0 0.915592285981964 NA NA prediction 0.831184571963928 Functional Gain - TCERG1 ENSG00000113649 CDS Human protein_coding chr5:145878238 chr5:145878238 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42476 0 0 1 0 1 TCERG1 chr5:145878249 5'GT 145878249 Upstream 12bp 39042 chr6 108668210 108668210 1 + C G rs147480760 108668210 + 108668190 108668230 41 AGCTTTTTTCAAGGAGCAAACCTCCAAGGGGCCTGTATGTT AGCTTTTTTCAAGGAGCAAAGCTCCAAGGGGCCTGTATGTT Direct Gain 0 0.915591356767149 NA NA prediction 0.831182713534298 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108668210 chr6:108668210 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_42477 0 0 0 0 2 AFG1L chr6:108668192 3'AG 108668192 Downstream 19bp 39043 chr6 108668210 108668210 1 + C G rs147480760 108668210 + 108668190 108668230 41 AGCTTTTTTCAAGGAGCAAACCTCCAAGGGGCCTGTATGTT AGCTTTTTTCAAGGAGCAAAGCTCCAAGGGGCCTGTATGTT Direct Gain 0 0.915591356767149 NA NA prediction 0.831182713534298 Functional Gain - AFG1L ENSG00000135537 CDS Human protein_coding chr6:108668210 chr6:108668210 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_42477 0 0 0 0 2 AFG1L chr6:108668243 5'GT 108668243 Upstream 34bp 39044 chr5 140037231 140037231 1 + T G LUAD 140037231 + 140037211 140037251 41 GGAACCCGTAACAAGAAGCTTAAGAAGAAGGATAAAGGTAC GGAACCCGTAACAAGAAGCTGAAGAAGAAGGATAAAGGTAC Direct Gain 0 0.915562976905866 NA NA prediction 0.831125953811732 Functional Gain - IK ENSG00000113141 CDS Human protein_coding chr5:140037231 chr5:140037231 synonymous SNV . 0 21 hm7G_associated_SNPs_42479 0 0 1 0 2 IK chr5:140037139 3'AG 140037139 Downstream 93bp 39045 chr5 140037231 140037231 1 + T G LUAD 140037231 + 140037211 140037251 41 GGAACCCGTAACAAGAAGCTTAAGAAGAAGGATAAAGGTAC GGAACCCGTAACAAGAAGCTGAAGAAGAAGGATAAAGGTAC Direct Gain 0 0.915562976905866 NA NA prediction 0.831125953811732 Functional Gain - IK ENSG00000113141 CDS Human protein_coding chr5:140037231 chr5:140037231 synonymous SNV . 0 21 hm7G_associated_SNPs_42479 0 0 1 0 2 IK chr5:140037247 5'GT 140037247 Upstream 17bp 39046 chr12 120878337 120878337 1 + A G LIHC 120878337 + 120878317 120878357 41 CCAACTGGCTACGAAGATGAATAAAGAGAATCTGGACCACT CCAACTGGCTACGAAGATGAGTAAAGAGAATCTGGACCACT Direct Gain 0 0.915532540197837 NA NA prediction 0.831065080395675 Functional Gain - COX6A1 ENSG00000111775 CDS Human protein_coding chr12:120878337 chr12:120878337 synonymous SNV . 0 21 hm7G_associated_SNPs_42481 0 0 1 0 1 COX6A1 chr12:120878257 3'AG 120878257 Downstream 81bp 39047 chr6 160237041 160237041 1 + C G BLCA 160237041 + 160237021 160237061 41 ATTCTGGACCAGAGATTGTTCACGCGAGCAGGTGTGAGAAA ATTCTGGACCAGAGATTGTTGACGCGAGCAGGTGTGAGAAA Direct Gain 0 0.915516791343199 NA NA prediction 0.831033582686399 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160237041 chr6:160237041 nonsynonymous SNV 0.712 0 21 hm7G_associated_SNPs_42482 0 0 1 0 2 PNLDC1 chr6:160237001 3'AG 160237001 Downstream 41bp 39048 chr6 160237041 160237041 1 + C G BLCA 160237041 + 160237021 160237061 41 ATTCTGGACCAGAGATTGTTCACGCGAGCAGGTGTGAGAAA ATTCTGGACCAGAGATTGTTGACGCGAGCAGGTGTGAGAAA Direct Gain 0 0.915516791343199 NA NA prediction 0.831033582686399 Functional Gain - PNLDC1 ENSG00000146453 CDS Human protein_coding chr6:160237041 chr6:160237041 nonsynonymous SNV 0.712 0 21 hm7G_associated_SNPs_42482 0 0 1 0 2 PNLDC1 chr6:160237065 5'GT 160237065 Upstream 25bp 39049 chr2 64796285 64796285 1 + A G UCEC 64796285 + 64796265 64796305 41 TGATGCACATGGCTTGAGATACCAGTGGGGCGGCTCCCATA TGATGCACATGGCTTGAGATGCCAGTGGGGCGGCTCCCATA Direct Gain 0 0.915514240513519 NA NA prediction 0.831028481027039 Functional Gain - AFTPH ENSG00000119844 CDS Human protein_coding chr2:64796285 chr2:64796285 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_42483 0 0 1 0 2 AFTPH chr2:64796226 3'AG 64796226 Downstream 60bp 39050 chr2 64796285 64796285 1 + A G UCEC 64796285 + 64796265 64796305 41 TGATGCACATGGCTTGAGATACCAGTGGGGCGGCTCCCATA TGATGCACATGGCTTGAGATGCCAGTGGGGCGGCTCCCATA Direct Gain 0 0.915514240513519 NA NA prediction 0.831028481027039 Functional Gain - AFTPH ENSG00000119844 CDS Human protein_coding chr2:64796285 chr2:64796285 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_42483 0 0 1 0 2 AFTPH chr2:64796352 5'GT 64796352 Upstream 68bp 39051 chr1 114508854 114508854 1 + C G LUAD 114508854 + 114508834 114508874 41 TCCAGCCCACAGCAATGATTCCAGAGGCCATGGGGAGTGGA TCCAGCCCACAGCAATGATTGCAGAGGCCATGGGGAGTGGA Direct Gain 0 0.915513046881694 NA NA prediction 0.831026093763388 Functional Gain - HIPK1 ENSG00000163349 CDS Human protein_coding chr1:114508854 chr1:114508854 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42484 0 0 1 0 1 HIPK1 chr1:114508755 3'AG 114508755 Downstream 100bp 39052 chr16 49407922 49407922 1 + A G ESCA 49407922 + 49407902 49407942 41 TACATGTGGAAGACTGCTGAAGATAGGCGCATGTCTGACCT TACATGTGGAAGACTGCTGAGGATAGGCGCATGTCTGACCT Direct Gain 0 0.91550967377845 NA NA prediction 0.831019347556899 Functional Gain - C16orf78 ENSG00000166152 CDS Human protein_coding chr16:49407922 chr16:49407922 synonymous SNV . 0 21 hm7G_associated_SNPs_42485 0 0 0 0 1 C16orf78 chr16:49408000 5'GT 49408000 Upstream 79bp 39053 chr4 144469148 144469148 1 + A G ACC 144469148 + 144469128 144469168 41 TACTAACAAAGGAAAAAACTATACTGAAGAAGAAGATCGTT TACTAACAAAGGAAAAAACTGTACTGAAGAAGAAGATCGTT Direct Gain 0 0.915497305443843 NA NA prediction 0.830994610887687 Functional Gain - SMARCA5 ENSG00000153147 CDS Human protein_coding chr4:144469148 chr4:144469148 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42487 0 0 1 0 1 SMARCA5 chr4:144469081 3'AG 144469081 Downstream 68bp 39054 chr2 98996743 98996743 1 + T G SKCM 98996743 + 98996723 98996763 41 CGTTTCCGTGGAGCCGAGCTTAAGGAGGTGTCCAGCCAAGA CGTTTCCGTGGAGCCGAGCTGAAGGAGGTGTCCAGCCAAGA Direct Gain 0 0.915486927558692 NA NA prediction 0.830973855117384 Functional Gain - CNGA3 ENSG00000144191 CDS Human protein_coding chr2:98996743 chr2:98996743 synonymous SNV . 0 21 hm7G_associated_SNPs_42489 0 0 0 0 1 CNGA3 chr2:98996817 5'GT 98996817 Upstream 75bp 39055 chr18 56892950 56892950 1 + A G COAD 56892950 + 56892930 56892970 41 AGCAGCAACTTCAAAGATGTAGGTTCAAAAGGCAAAGGTAA AGCAGCAACTTCAAAGATGTGGGTTCAAAAGGCAAAGGTAA Direct Gain 0 0.915483806836256 NA NA prediction 0.830967613672512 Functional Gain - GRP ENSG00000134443 CDS Human protein_coding chr18:56892950 chr18:56892950 synonymous SNV . 0 21 hm7G_associated_SNPs_42490 0 0 0 0 1 GRP chr18:56892966 5'GT 56892966 Upstream 17bp 39056 chrX 64721705 64721705 1 + A G UCEC 64721705 + 64721685 64721725 41 CGGCCACAAGTGCAAATACTACCATCCGGAGCGGGCCAACC CGGCCACAAGTGCAAATACTGCCATCCGGAGCGGGCCAACC Direct Gain 0 0.915478144620128 NA NA prediction 0.830956289240256 Functional Gain - ZC3H12B ENSG00000102053 CDS Human protein_coding chrX:64721705 chrX:64721705 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42491 0 0 0 0 1 ZC3H12B chrX:64721669 3'AG 64721669 Downstream 37bp 39057 chr11 64781688 64781688 1 + C G BLCA 64781688 + 64781668 64781708 41 GCTCCGGGGACCATGGGGCTCCTGACCATTCTGAAGAAGAT GCTCCGGGGACCATGGGGCTGCTGACCATTCTGAAGAAGAT Direct Gain 0 0.915461403024769 NA NA prediction 0.830922806049539 Functional Gain - ARL2 ENSG00000213465;ENSG00000273003 CDS Human other chr11:64781688 chr11:64781688 synonymous SNV . 0 21 hm7G_associated_SNPs_42493 0 0 1 0 1 ARL2 chr11:64781744 5'GT 64781744 Upstream 57bp 39058 chr3 15282038 15282038 1 + A G UCEC 15282038 + 15282018 15282058 41 TTTACGTTGGAAAGGAAGATACAGTGAAAATGATGTAAAAA TTTACGTTGGAAAGGAAGATGCAGTGAAAATGATGTAAAAA Direct Gain 0 0.915444304891682 NA NA prediction 0.830888609783363 Functional Gain - CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15282038 chr3:15282038 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42495 0 0 1 0 2 CAPN7 chr3:15281980 3'AG 15281980 Downstream 59bp 39059 chr3 15282038 15282038 1 + A G UCEC 15282038 + 15282018 15282058 41 TTTACGTTGGAAAGGAAGATACAGTGAAAATGATGTAAAAA TTTACGTTGGAAAGGAAGATGCAGTGAAAATGATGTAAAAA Direct Gain 0 0.915444304891682 NA NA prediction 0.830888609783363 Functional Gain - CAPN7 ENSG00000131375 CDS Human protein_coding chr3:15282038 chr3:15282038 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42495 0 0 1 0 2 CAPN7 chr3:15282124 5'GT 15282124 Upstream 87bp 39060 chr2 10053352 10053352 1 + A G BLCA 10053352 + 10053332 10053372 41 AAAGCTTTTGATGAGAAAAAACAAAAATGGGAAGAAGCAAG AAAGCTTTTGATGAGAAAAAGCAAAAATGGGAAGAAGCAAG Direct Gain 0 0.915435151627543 NA NA prediction 0.830870303255087 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10053352 chr2:10053352 synonymous SNV . 0 21 hm7G_associated_SNPs_42496 0 0 1 0 2 TAF1B chr2:10053288 3'AG 10053288 Downstream 65bp 39061 chr2 10053352 10053352 1 + A G BLCA 10053352 + 10053332 10053372 41 AAAGCTTTTGATGAGAAAAAACAAAAATGGGAAGAAGCAAG AAAGCTTTTGATGAGAAAAAGCAAAAATGGGAAGAAGCAAG Direct Gain 0 0.915435151627543 NA NA prediction 0.830870303255087 Functional Gain - TAF1B ENSG00000115750 CDS Human protein_coding chr2:10053352 chr2:10053352 synonymous SNV . 0 21 hm7G_associated_SNPs_42496 0 0 1 0 2 TAF1B chr2:10053378 5'GT 10053378 Upstream 27bp 39062 chr12 81102693 81102693 1 + C G CESC 81102693 + 81102673 81102713 41 CATCGTGGACAGTATTTCCTCGGAGGAACGCAAACTCCCCT CATCGTGGACAGTATTTCCTGGGAGGAACGCAAACTCCCCT Direct Gain 0 0.915421174416136 NA NA prediction 0.830842348832272 Functional Gain - MYF6 ENSG00000111046 CDS Human protein_coding chr12:81102693 chr12:81102693 nonsynonymous SNV 0.998 5 21 hm7G_associated_SNPs_42498 0 0 0 0 1 MYF6 chr12:81102621 3'AG 81102621 Downstream 73bp 39063 chr4 190878589 190878589 1 + A G rs561930100 190878589 + 190878569 190878609 41 TGGCCTCAAATAGCTGCTTTATTAGATGCAATGAAGCAGGG TGGCCTCAAATAGCTGCTTTGTTAGATGCAATGAAGCAGGG Direct Gain 0 0.915378827646052 NA NA prediction 0.830757655292105 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878589 chr4:190878589 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_42502 0 0 0 0 2 FRG1 chr4:190878553 3'AG 190878553 Downstream 37bp 39064 chr4 190878589 190878589 1 + A G rs561930100 190878589 + 190878569 190878609 41 TGGCCTCAAATAGCTGCTTTATTAGATGCAATGAAGCAGGG TGGCCTCAAATAGCTGCTTTGTTAGATGCAATGAAGCAGGG Direct Gain 0 0.915378827646052 NA NA prediction 0.830757655292105 Functional Gain - FRG1 ENSG00000109536 CDS Human protein_coding chr4:190878589 chr4:190878589 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_42502 0 0 0 0 2 FRG1 chr4:190878657 5'GT 190878657 Upstream 69bp 39065 chr3 186299796 186299796 1 + A G UCEC 186299796 + 186299776 186299816 41 TACCTCAGACTAGTGAATGAAGAACGAACGCTGGAAGTAGA TACCTCAGACTAGTGAATGAGGAACGAACGCTGGAAGTAGA Direct Gain 0 0.915370345815618 NA NA prediction 0.830740691631237 Functional Gain - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186299796 chr3:186299796 synonymous SNV . 0 21 hm7G_associated_SNPs_42503 0 0 1 0 2 DNAJB11 chr3:186299784 3'AG 186299784 Downstream 13bp 39066 chr3 186299796 186299796 1 + A G UCEC 186299796 + 186299776 186299816 41 TACCTCAGACTAGTGAATGAAGAACGAACGCTGGAAGTAGA TACCTCAGACTAGTGAATGAGGAACGAACGCTGGAAGTAGA Direct Gain 0 0.915370345815618 NA NA prediction 0.830740691631237 Functional Gain - DNAJB11 ENSG00000090520 CDS Human protein_coding chr3:186299796 chr3:186299796 synonymous SNV . 0 21 hm7G_associated_SNPs_42503 0 0 1 0 2 DNAJB11 chr3:186299866 5'GT 186299866 Upstream 71bp 39067 chr2 10136062 10136062 1 + T G PRAD 10136062 + 10136042 10136082 41 ATGACTTTGCTGTCCCTCCTTCTACCAAGCTGGCCCGGATA ATGACTTTGCTGTCCCTCCTGCTACCAAGCTGGCCCGGATA Direct Gain 0 0.915369539043893 NA NA prediction 0.830739078087786 Functional Gain - GRHL1 ENSG00000134317 CDS Human protein_coding chr2:10136062 chr2:10136062 nonsynonymous SNV 0.003 1 21 hm7G_associated_SNPs_42504 0 0 0 0 2 GRHL1 chr2:10136007 3'AG 10136007 Downstream 56bp 39068 chr2 10136062 10136062 1 + T G PRAD 10136062 + 10136042 10136082 41 ATGACTTTGCTGTCCCTCCTTCTACCAAGCTGGCCCGGATA ATGACTTTGCTGTCCCTCCTGCTACCAAGCTGGCCCGGATA Direct Gain 0 0.915369539043893 NA NA prediction 0.830739078087786 Functional Gain - GRHL1 ENSG00000134317 CDS Human protein_coding chr2:10136062 chr2:10136062 nonsynonymous SNV 0.003 1 21 hm7G_associated_SNPs_42504 0 0 0 0 2 GRHL1 chr2:10136098 5'GT 10136098 Upstream 37bp 39069 chr4 55595599 55595599 1 + C G ESCA 55595599 + 55595579 55595619 41 TTTGTTCAAAGCAGGAAGATCATGCAGAAGCTGCACTTTAT TTTGTTCAAAGCAGGAAGATGATGCAGAAGCTGCACTTTAT Direct Gain 0 0.915346076690623 NA NA prediction 0.830692153381245 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55595599 chr4:55595599 nonsynonymous SNV 0.928 0 21 hm7G_associated_SNPs_42507 0 0 0 0 2 KIT chr4:55595501 3'AG 55595501 Downstream 99bp 39070 chr4 55595599 55595599 1 + C G ESCA 55595599 + 55595579 55595619 41 TTTGTTCAAAGCAGGAAGATCATGCAGAAGCTGCACTTTAT TTTGTTCAAAGCAGGAAGATGATGCAGAAGCTGCACTTTAT Direct Gain 0 0.915346076690623 NA NA prediction 0.830692153381245 Functional Gain - KIT ENSG00000157404 CDS Human protein_coding chr4:55595599 chr4:55595599 nonsynonymous SNV 0.928 0 21 hm7G_associated_SNPs_42507 0 0 0 0 2 KIT chr4:55595651 5'GT 55595651 Upstream 53bp 39071 chr17 38024628 38024628 1 + A G UCEC 38024628 + 38024608 38024648 41 ATGATGCGAACGTGCGTCCTACTCTCCGCGGTGCTCTGGTG ATGATGCGAACGTGCGTCCTGCTCTCCGCGGTGCTCTGGTG Direct Gain 0 0.915345109194789 NA NA prediction 0.830690218389577 Functional Gain - ZPBP2 ENSG00000186075 CDS Human protein_coding chr17:38024628 chr17:38024628 synonymous SNV . 0 21 hm7G_associated_SNPs_42508 0 0 0 0 1 ZPBP2 chr17:38024659 5'GT 38024659 Upstream 32bp 39072 chr2 74683272 74683272 1 + C G ESCA 74683272 + 74683252 74683292 41 CTCTCCACTTCGGGACCTATCAGGAGGGTTAGGGGGTCAGG CTCTCCACTTCGGGACCTATGAGGAGGGTTAGGGGGTCAGG Direct Gain 0 0.91533640235124 NA NA prediction 0.83067280470248 Functional Gain - INO80B ENSG00000115274 CDS Human protein_coding chr2:74683272 chr2:74683272 stopgain 0.996 0 21 hm7G_associated_SNPs_42509 0 0 1 0 1 INO80B chr2:74683230 3'AG 74683230 Downstream 43bp 39073 chr19 18672950 18672950 1 + C G LUSC 18672950 + 18672930 18672970 41 GATGATGTCAACGCCATCATCCTGGCCCAGAAGAACATGTG GATGATGTCAACGCCATCATGCTGGCCCAGAAGAACATGTG Direct Gain 0 0.915335157471052 NA NA prediction 0.830670314942104 Functional Gain - KXD1 ENSG00000105700 CDS Human protein_coding chr19:18672950 chr19:18672950 nonsynonymous SNV 0.998 4 21 hm7G_associated_SNPs_42510 0 0 1 0 1 KXD1 chr19:18672967 5'GT 18672967 Upstream 18bp 39074 chr9 12702288 12702288 1 + A G rs568712212 12702288 + 12702268 12702308 41 CAGGCACCGAGGATGGGCCAATTAGGAGAAATCCAGCTGGA CAGGCACCGAGGATGGGCCAGTTAGGAGAAATCCAGCTGGA Direct Gain 0 0.915319186434338 NA NA prediction 0.830638372868676 Functional Gain - TYRP1 ENSG00000107165 CDS Human protein_coding chr9:12702288 chr9:12702288 nonsynonymous SNV 0.996 5 21 hm7G_associated_SNPs_42513 0 0 0 0 1 TYRP1 chr9:12702271 3'AG 12702271 Downstream 18bp 39075 chr8 92083424 92083424 1 + A G rs11557571 92083424 + 92083404 92083444 41 GACAAGAAGAGGAGGAAGCAACTCACCGAAGATGTGGCCAA GACAAGAAGAGGAGGAAGCAGCTCACCGAAGATGTGGCCAA Direct Gain 0 0.915315130063778 NA NA prediction 0.830630260127557 Functional Gain - OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92083424 chr8:92083424 synonymous SNV . 0 21 hm7G_associated_SNPs_42514 0 0 1 0 2 OTUD6B chr8:92083366 3'AG 92083366 Downstream 59bp 39076 chr8 92083424 92083424 1 + A G rs11557571 92083424 + 92083404 92083444 41 GACAAGAAGAGGAGGAAGCAACTCACCGAAGATGTGGCCAA GACAAGAAGAGGAGGAAGCAGCTCACCGAAGATGTGGCCAA Direct Gain 0 0.915315130063778 NA NA prediction 0.830630260127557 Functional Gain - OTUD6B ENSG00000155100 CDS Human protein_coding chr8:92083424 chr8:92083424 synonymous SNV . 0 21 hm7G_associated_SNPs_42514 0 0 1 0 2 OTUD6B chr8:92083517 5'GT 92083517 Upstream 94bp 39077 chr7 45930211 45930211 1 + C G LUAD 45930211 + 45930191 45930231 41 GAGGAGCTCCTGGATAATTTCCATCTGATGGCCCCTTCTGA GAGGAGCTCCTGGATAATTTGCATCTGATGGCCCCTTCTGA Direct Gain 0 0.915272595406962 NA NA prediction 0.830545190813925 Functional Gain - IGFBP1 ENSG00000146678 CDS Human protein_coding chr7:45930211 chr7:45930211 nonsynonymous SNV 0.021 0 21 hm7G_associated_SNPs_42517 0 0 1 0 1 IGFBP1 chr7:45930147 3'AG 45930147 Downstream 65bp 39078 chr12 123265748 123265748 1 + C G LUSC 123265748 + 123265728 123265768 41 ACTGAAATAATCAGGTCACTCACGAAGAAGGTAAAAGCTCT ACTGAAATAATCAGGTCACTGACGAAGAAGGTAAAAGCTCT Direct Gain 0 0.915268290225953 NA NA prediction 0.830536580451907 Functional Gain - CCDC62 ENSG00000130783 CDS Human protein_coding chr12:123265748 chr12:123265748 synonymous SNV . 0 21 hm7G_associated_SNPs_42519 0 0 1 0 1 CCDC62 chr12:123265711 3'AG 123265711 Downstream 38bp 39079 chr1 12066704 12066704 1 + C G ESCA 12066704 + 12066684 12066724 41 CATGGTTACCGGCCTGGCCTCCTTGACATCCAGGACCTCCA CATGGTTACCGGCCTGGCCTGCTTGACATCCAGGACCTCCA Direct Gain 0 0.915256138284778 NA NA prediction 0.830512276569557 Functional Gain - MFN2 ENSG00000116688 CDS Human protein_coding chr1:12066704 chr1:12066704 nonsynonymous SNV 0.996 3 21 hm7G_associated_SNPs_42523 0 0 1 0 1 MFN2 chr1:12066750 5'GT 12066750 Upstream 47bp 39080 chr17 40095264 40095264 1 + A G SKCM 40095264 + 40095244 40095284 41 AGTCTTCAGAAAGCTGAGAAAGTGCTGAAGAAGGTACTGGA AGTCTTCAGAAAGCTGAGAAGGTGCTGAAGAAGGTACTGGA Direct Gain 0 0.915248445094595 NA NA prediction 0.83049689018919 Functional Gain - TTC25 ENSG00000204815 ncRNA_exonic Human protein_coding chr17:40095264 chr17:40095264 . . 0 21 hm7G_associated_SNPs_42525 0 0 0 0 1 TTC25 chr17:40095218 3'AG 40095218 Downstream 47bp 39081 chr20 31609533 31609533 1 + C G CESC 31609533 + 31609513 31609553 41 TCTTTCTCGCCTGCAGCTCTCTTGGCCATGGGAATTGCCCT TCTTTCTCGCCTGCAGCTCTGTTGGCCATGGGAATTGCCCT Direct Gain 0 0.915217675799834 NA NA prediction 0.830435351599669 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31609533 chr20:31609533 synonymous SNV . 0 21 hm7G_associated_SNPs_42527 0 0 1 0 2 BPIFB2 chr20:31609529 3'AG 31609529 Downstream 5bp 39082 chr20 31609533 31609533 1 + C G CESC 31609533 + 31609513 31609553 41 TCTTTCTCGCCTGCAGCTCTCTTGGCCATGGGAATTGCCCT TCTTTCTCGCCTGCAGCTCTGTTGGCCATGGGAATTGCCCT Direct Gain 0 0.915217675799834 NA NA prediction 0.830435351599669 Functional Gain - BPIFB2 ENSG00000078898 CDS Human protein_coding chr20:31609533 chr20:31609533 synonymous SNV . 0 21 hm7G_associated_SNPs_42527 0 0 1 0 2 BPIFB2 chr20:31609605 5'GT 31609605 Upstream 73bp 39083 chr14 96389202 96389202 1 + A G SARC 96389202 + 96389182 96389222 41 AAGACAGAGGAGGTCAAGAAAAAGAAAGTAAAGAGGAGAGT AAGACAGAGGAGGTCAAGAAGAAGAAAGTAAAGAGGAGAGT Direct Gain 0 0.915216947148043 NA NA prediction 0.830433894296085 Functional Gain - TUNAR ENSG00000250366 ncRNA_exonic Human protein_coding chr14:96389202 chr14:96389202 . . 0 21 hm7G_associated_SNPs_42528 0 0 0 0 1 TUNAR chr14:96389118 3'AG 96389118 Downstream 85bp 39084 chr19 3938740 3938740 1 + C G MESO 3938740 + 3938720 3938760 41 ATCCTCCTCCTGGAAGGCTTCCTGCTCTACAGCTACAAGTA ATCCTCCTCCTGGAAGGCTTGCTGCTCTACAGCTACAAGTA Direct Gain 0 0.915213805199121 NA NA prediction 0.830427610398242 Functional Gain - NMRK2 ENSG00000077009 CDS Human protein_coding chr19:3938740 chr19:3938740 nonsynonymous SNV 0.956 0 21 hm7G_associated_SNPs_42529 0 0 0 0 1 NMRK2 chr19:3938757 5'GT 3938757 Upstream 18bp 39085 chr12 53836495 53836495 1 + A G UCEC 53836495 + 53836475 53836515 41 TCAGGCTGGAGGACACACCTAAACATGTGGAATCCCAATGC TCAGGCTGGAGGACACACCTGAACATGTGGAATCCCAATGC Direct Gain 0 0.915213289844739 NA NA prediction 0.830426579689479 Functional Gain - PRR13 ENSG00000205352 CDS Human protein_coding chr12:53836495 chr12:53836495 synonymous SNV . 0 21 hm7G_associated_SNPs_42530 0 0 1 0 2 PRR13 chr12:53836479 3'AG 53836479 Downstream 17bp 39086 chr12 53836495 53836495 1 + A G UCEC 53836495 + 53836475 53836515 41 TCAGGCTGGAGGACACACCTAAACATGTGGAATCCCAATGC TCAGGCTGGAGGACACACCTGAACATGTGGAATCCCAATGC Direct Gain 0 0.915213289844739 NA NA prediction 0.830426579689479 Functional Gain - PRR13 ENSG00000205352 CDS Human protein_coding chr12:53836495 chr12:53836495 synonymous SNV . 0 21 hm7G_associated_SNPs_42530 0 0 1 0 2 PRR13 chr12:53836517 5'GT 53836517 Upstream 23bp 39087 chr6 125541297 125541297 1 + C G CESC 125541297 + 125541277 125541317 41 GCTGACTTCTCTAGCATGCTCTCTGAGGAGGAAAAGGAAGA GCTGACTTCTCTAGCATGCTGTCTGAGGAGGAAAAGGAAGA Direct Gain 0 0.915189312354098 NA NA prediction 0.830378624708196 Functional Gain - TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125541297 chr6:125541297 synonymous SNV . 0 21 hm7G_associated_SNPs_42531 0 0 1 0 2 TPD52L1 chr6:125541224 3'AG 125541224 Downstream 74bp 39088 chr6 125541297 125541297 1 + C G CESC 125541297 + 125541277 125541317 41 GCTGACTTCTCTAGCATGCTCTCTGAGGAGGAAAAGGAAGA GCTGACTTCTCTAGCATGCTGTCTGAGGAGGAAAAGGAAGA Direct Gain 0 0.915189312354098 NA NA prediction 0.830378624708196 Functional Gain - TPD52L1 ENSG00000111907 CDS Human protein_coding chr6:125541297 chr6:125541297 synonymous SNV . 0 21 hm7G_associated_SNPs_42531 0 0 1 0 2 TPD52L1 chr6:125541339 5'GT 125541339 Upstream 43bp 39089 chr3 128525394 128525394 1 + T G GBM 128525394 + 128525374 128525414 41 GATCCTGAAAACTTCCCATTTGTTGTGTTGGGAAACAAGAT GATCCTGAAAACTTCCCATTGGTTGTGTTGGGAAACAAGAT Direct Gain 0 0.915180614951846 NA NA prediction 0.830361229903692 Functional Gain - RAB7A ENSG00000075785 CDS Human protein_coding chr3:128525394 chr3:128525394 nonsynonymous SNV 0.989 1 21 hm7G_associated_SNPs_42533 0 0 1 0 1 RAB7A chr3:128525433 5'GT 128525433 Upstream 40bp 39090 chr4 146042370 146042370 1 + A G COAD 146042370 + 146042350 146042390 41 GAATGCTTGCTGGAAGACTTAAACCTGATGAAGGAGGTACA GAATGCTTGCTGGAAGACTTGAACCTGATGAAGGAGGTACA Direct Gain 0 0.915174117140384 NA NA prediction 0.830348234280768 Functional Gain - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146042370 chr4:146042370 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42534 0 0 1 1 2 ABCE1 chr4:146042326 3'AG 146042326 Downstream 45bp 39091 chr4 146042370 146042370 1 + A G COAD 146042370 + 146042350 146042390 41 GAATGCTTGCTGGAAGACTTAAACCTGATGAAGGAGGTACA GAATGCTTGCTGGAAGACTTGAACCTGATGAAGGAGGTACA Direct Gain 0 0.915174117140384 NA NA prediction 0.830348234280768 Functional Gain - ABCE1 ENSG00000164163 CDS Human protein_coding chr4:146042370 chr4:146042370 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42534 0 0 1 1 2 ABCE1 chr4:146042385 5'GT 146042385 Upstream 16bp 39092 chr10 114053581 114053581 1 + C G SKCM 114053581 + 114053561 114053601 41 TCTGTTTGCAGGAGTGGAAGCCAAAGGGTTAAGCATTAGGT TCTGTTTGCAGGAGTGGAAGGCAAAGGGTTAAGCATTAGGT Direct Gain 0 0.915165537280923 NA NA prediction 0.830331074561846 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053581 chr10:114053581 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_42535 0 0 0 0 2 TECTB chr10:114053496 3'AG 114053496 Downstream 86bp 39093 chr10 114053581 114053581 1 + C G SKCM 114053581 + 114053561 114053601 41 TCTGTTTGCAGGAGTGGAAGCCAAAGGGTTAAGCATTAGGT TCTGTTTGCAGGAGTGGAAGGCAAAGGGTTAAGCATTAGGT Direct Gain 0 0.915165537280923 NA NA prediction 0.830331074561846 Functional Gain - TECTB ENSG00000119913 CDS Human protein_coding chr10:114053581 chr10:114053581 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_42535 0 0 0 0 2 TECTB chr10:114053599 5'GT 114053599 Upstream 19bp 39094 chr16 2034907 2034907 1 + T G UCEC 2034907 + 2034887 2034927 41 TACATTTATTTTCTAAGTTTTACCCCTGTGAGGAGTGTGCT TACATTTATTTTCTAAGTTTGACCCCTGTGAGGAGTGTGCT Direct Gain 0 0.915155794980069 NA NA prediction 0.830311589960138 Functional Gain - GFER ENSG00000127554 CDS Human protein_coding chr16:2034907 chr16:2034907 nonsynonymous SNV 0.987 3 21 hm7G_associated_SNPs_42536 0 0 1 0 1 GFER chr16:2034944 5'GT 2034944 Upstream 38bp 39095 chrX 117578414 117578414 1 + C G BLCA 117578414 + 117578394 117578434 41 TCTGAAAAATCAGAAGGGAACGAGAAAAGTGAAGATGCTGA TCTGAAAAATCAGAAGGGAAGGAGAAAAGTGAAGATGCTGA Direct Gain 0 0.915142272177968 NA NA prediction 0.830284544355935 Functional Gain - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117578414 chrX:117578414 nonsynonymous SNV 0.103 0 21 hm7G_associated_SNPs_42537 0 0 1 0 2 WDR44 chrX:117578323 3'AG 117578323 Downstream 92bp 39096 chrX 117578414 117578414 1 + C G BLCA 117578414 + 117578394 117578434 41 TCTGAAAAATCAGAAGGGAACGAGAAAAGTGAAGATGCTGA TCTGAAAAATCAGAAGGGAAGGAGAAAAGTGAAGATGCTGA Direct Gain 0 0.915142272177968 NA NA prediction 0.830284544355935 Functional Gain - WDR44 ENSG00000131725 CDS Human protein_coding chrX:117578414 chrX:117578414 nonsynonymous SNV 0.103 0 21 hm7G_associated_SNPs_42537 0 0 1 0 2 WDR44 chrX:117578457 5'GT 117578457 Upstream 44bp 39097 chr14 77928530 77928530 1 + A G LIHC 77928530 + 77928510 77928550 41 TAAGTCAGGAGTACAATACAAAGGACATGTGGAGATCCCCA TAAGTCAGGAGTACAATACAGAGGACATGTGGAGATCCCCA Direct Gain 0 0.915139840624643 NA NA prediction 0.830279681249287 Functional Gain - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77928530 chr14:77928530 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_42538 0 0 1 0 2 AHSA1 chr14:77928503 3'AG 77928503 Downstream 28bp 39098 chr14 77928530 77928530 1 + A G LIHC 77928530 + 77928510 77928550 41 TAAGTCAGGAGTACAATACAAAGGACATGTGGAGATCCCCA TAAGTCAGGAGTACAATACAGAGGACATGTGGAGATCCCCA Direct Gain 0 0.915139840624643 NA NA prediction 0.830279681249287 Functional Gain - AHSA1 ENSG00000100591 CDS Human protein_coding chr14:77928530 chr14:77928530 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_42538 0 0 1 0 2 AHSA1 chr14:77928585 5'GT 77928585 Upstream 56bp 39099 chr11 60482872 60482872 1 + C G LUAD 60482872 + 60482852 60482892 41 CCAAGTTATTCCAGTGAGATCCAAGCAAATAAGTAAGGCTA CCAAGTTATTCCAGTGAGATGCAAGCAAATAAGTAAGGCTA Direct Gain 0 0.915135358969897 NA NA prediction 0.830270717939794 Functional Gain - MS4A8 ENSG00000166959 CDS Human protein_coding chr11:60482872 chr11:60482872 nonsynonymous SNV 0.000 1 21 hm7G_associated_SNPs_42539 0 0 0 0 1 MS4A8 chr11:60482783 3'AG 60482783 Downstream 90bp 39100 chr3 190936667 190936667 1 + A G LUSC 190936667 + 190936647 190936687 41 GAAAATGATGTGATTGAGACAAAGAAGAAAAGGAGTTTCTC GAAAATGATGTGATTGAGACGAAGAAGAAAAGGAGTTTCTC Direct Gain 0 0.915130320040652 NA NA prediction 0.830260640081304 Functional Gain - OSTN ENSG00000188729 CDS Human protein_coding chr3:190936667 chr3:190936667 synonymous SNV . 0 21 hm7G_associated_SNPs_42540 0 0 0 0 1 OSTN chr3:190936750 5'GT 190936750 Upstream 84bp 39101 chr1 28600607 28600607 1 + A G rs2274848 28600607 + 28600587 28600627 41 TGTGCTTTGTGGAAGACCCTACTTTCGGATATGAGGACTTC TGTGCTTTGTGGAAGACCCTGCTTTCGGATATGAGGACTTC Direct Gain 0 0.915123624199871 NA NA prediction 0.830247248399742 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600607 chr1:28600607 nonsynonymous SNV 0.627 0 21 hm7G_associated_SNPs_42541 0 0 1 0 2 SESN2 chr1:28600551 3'AG 28600551 Downstream 57bp 39102 chr1 28600607 28600607 1 + A G rs2274848 28600607 + 28600587 28600627 41 TGTGCTTTGTGGAAGACCCTACTTTCGGATATGAGGACTTC TGTGCTTTGTGGAAGACCCTGCTTTCGGATATGAGGACTTC Direct Gain 0 0.915123624199871 NA NA prediction 0.830247248399742 Functional Gain - SESN2 ENSG00000130766 CDS Human protein_coding chr1:28600607 chr1:28600607 nonsynonymous SNV 0.627 0 21 hm7G_associated_SNPs_42541 0 0 1 0 2 SESN2 chr1:28600669 5'GT 28600669 Upstream 63bp 39103 chr11 124495764 124495764 1 + A G rs370182902 124495764 + 124495744 124495784 41 GAAGAAAACTAAGAAGGAGAAAAAAGAAAAAGGCAAAGAGA GAAGAAAACTAAGAAGGAGAGAAAAGAAAAAGGCAAAGAGA Direct Gain 0 0.915115682728544 NA NA prediction 0.830231365457089 Functional Gain - TBRG1 ENSG00000154144 CDS Human protein_coding chr11:124495764 chr11:124495764 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42543 0 0 1 0 1 TBRG1 chr11:124495799 5'GT 124495799 Upstream 36bp 39104 chr17 7606639 7606639 1 + A G rs140360074 7606639 + 7606619 7606659 41 CCCACAGAGAGTGGGGACGAAGGAGAGGAGCTGGGCCTTCC CCCACAGAGAGTGGGGACGAGGGAGAGGAGCTGGGCCTTCC Direct Gain 0 0.91511513033985 NA NA prediction 0.830230260679699 Functional Gain - WRAP53 ENSG00000141499 CDS Human protein_coding chr17:7606639 chr17:7606639 synonymous SNV . 0 21 hm7G_associated_SNPs_42544 1 0 0 0 1 WRAP53 chr17:7606561 3'AG 7606561 Downstream 79bp 39105 chr19 42791743 42791743 1 + T G LGG 42791743 + 42791723 42791763 41 CATGAATGCCTTCATGATCTTCAGCAAGCGGCACCGGGCCC CATGAATGCCTTCATGATCTGCAGCAAGCGGCACCGGGCCC Direct Gain 0 0.915109461283339 NA NA prediction 0.830218922566678 Functional Gain - CIC ENSG00000079432 CDS Human protein_coding chr19:42791743 chr19:42791743 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42546 0 0 1 0 1 CIC chr19:42791697 3'AG 42791697 Downstream 47bp 39106 chr7 63720697 63720697 1 + A G GBM 63720697 + 63720677 63720717 41 TTATATAGAGATGTGATGTTAGAGAACTACAGAAACCTGGT TTATATAGAGATGTGATGTTGGAGAACTACAGAAACCTGGT Direct Gain 0 0.915101000018952 NA NA prediction 0.830202000037905 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720697 chr7:63720697 synonymous SNV . 0 21 hm7G_associated_SNPs_42547 0 0 0 0 2 ZNF679 chr7:63720599 3'AG 63720599 Downstream 99bp 39107 chr7 63720697 63720697 1 + A G GBM 63720697 + 63720677 63720717 41 TTATATAGAGATGTGATGTTAGAGAACTACAGAAACCTGGT TTATATAGAGATGTGATGTTGGAGAACTACAGAAACCTGGT Direct Gain 0 0.915101000018952 NA NA prediction 0.830202000037905 Functional Gain - ZNF679 ENSG00000197123 CDS Human protein_coding chr7:63720697 chr7:63720697 synonymous SNV . 0 21 hm7G_associated_SNPs_42547 0 0 0 0 2 ZNF679 chr7:63720725 5'GT 63720725 Upstream 29bp 39108 chr3 73114267 73114267 1 + A G rs561953405 73114267 + 73114247 73114287 41 CACTGTACAGAAGAGGATGAAGAAGAGGATGAAGAGGAAGA CACTGTACAGAAGAGGATGAGGAAGAGGATGAAGAGGAAGA Direct Gain 0 0.91507479254125 NA NA prediction 0.8301495850825 Functional Gain - PPP4R2 ENSG00000163605 CDS Human protein_coding chr3:73114267 chr3:73114267 synonymous SNV . 0 21 hm7G_associated_SNPs_42548 0 0 1 0 1 PPP4R2 chr3:73114292 5'GT 73114292 Upstream 26bp 39109 chr7 139106914 139106914 1 + C G STAD 139106914 + 139106894 139106934 41 ATTAATATTTTTCAGATCCTCAAAAGAAAGATTCAGAGACC ATTAATATTTTTCAGATCCTGAAAAGAAAGATTCAGAGACC Direct Gain 0 0.915050001729446 NA NA prediction 0.830100003458892 Functional Gain - C7orf55-LUC7L2;LUC7L2 ENSG00000146963;ENSG00000269955 CDS Human other chr7:139106914 chr7:139106914 stopgain 1.000 0 21 hm7G_associated_SNPs_42549 0 0 1 0 1 C7orf55-LUC7L2;LUC7L2 chr7:139106909 3'AG 139106909 Downstream 6bp 39110 chr12 102069101 102069101 1 + T G COAD 102069101 + 102069081 102069121 41 CCACCCCAAATTGTGAAGATTGAGGATGTCTGGGGAGAAAA CCACCCCAAATTGTGAAGATGGAGGATGTCTGGGGAGAAAA Direct Gain 0 0.915047976221375 NA NA prediction 0.83009595244275 Functional Gain - MYBPC1 ENSG00000196091 CDS Human protein_coding chr12:102069101 chr12:102069101 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_42550 0 0 0 0 1 MYBPC1 chr12:102069070 3'AG 102069070 Downstream 32bp 39111 chr20 29847316 29847316 1 + A G KIRC 29847316 + 29847296 29847336 41 GCAGATGCAGGAAATCATGCAAAGAAATTGAGAGGAAGAAA GCAGATGCAGGAAATCATGCGAAGAAATTGAGAGGAAGAAA Direct Gain 0 0.915040154725133 NA NA prediction 0.830080309450265 Functional Gain - DEFB115 ENSG00000215547 CDS Human protein_coding chr20:29847316 chr20:29847316 nonsynonymous SNV 0.308 2 21 hm7G_associated_SNPs_42551 0 0 0 0 1 DEFB115 chr20:29847263 3'AG 29847263 Downstream 54bp 39112 chr13 103328682 103328682 1 + A G UCEC 103328682 + 103328662 103328702 41 ATAAACATGCATTAGTAAATAAAATGTATGGGAGAGGCCTT ATAAACATGCATTAGTAAATGAAATGTATGGGAGAGGCCTT Direct Gain 0 0.914980144536611 NA NA prediction 0.829960289073222 Functional Gain - TPP2 ENSG00000134900 CDS Human protein_coding chr13:103328682 chr13:103328682 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42554 0 0 0 0 2 TPP2 chr13:103328646 3'AG 103328646 Downstream 37bp 39113 chr13 103328682 103328682 1 + A G UCEC 103328682 + 103328662 103328702 41 ATAAACATGCATTAGTAAATAAAATGTATGGGAGAGGCCTT ATAAACATGCATTAGTAAATGAAATGTATGGGAGAGGCCTT Direct Gain 0 0.914980144536611 NA NA prediction 0.829960289073222 Functional Gain - TPP2 ENSG00000134900 CDS Human protein_coding chr13:103328682 chr13:103328682 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42554 0 0 0 0 2 TPP2 chr13:103328765 5'GT 103328765 Upstream 84bp 39114 chr7 102040073 102040073 1 + A G COAD 102040073 + 102040053 102040093 41 AGAATATCAGCGACAGGACTACATGGATGCCATGGCTGAGA AGAATATCAGCGACAGGACTGCATGGATGCCATGGCTGAGA Direct Gain 0 0.914952238798725 NA NA prediction 0.829904477597451 Functional Gain - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102040073 chr7:102040073 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42555 0 0 1 0 2 PRKRIP1 chr7:102039995 3'AG 102039995 Downstream 79bp 39115 chr7 102040073 102040073 1 + A G COAD 102040073 + 102040053 102040093 41 AGAATATCAGCGACAGGACTACATGGATGCCATGGCTGAGA AGAATATCAGCGACAGGACTGCATGGATGCCATGGCTGAGA Direct Gain 0 0.914952238798725 NA NA prediction 0.829904477597451 Functional Gain - PRKRIP1 ENSG00000128563 CDS Human protein_coding chr7:102040073 chr7:102040073 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42555 0 0 1 0 2 PRKRIP1 chr7:102040095 5'GT 102040095 Upstream 23bp 39116 chr13 21205194 21205194 1 + A G COAD 21205194 + 21205174 21205214 41 TGTTGGAAAAAAAGGACAGTAGAGTGAAAAGTGCAGCTGCA TGTTGGAAAAAAAGGACAGTGGAGTGAAAAGTGCAGCTGCA Direct Gain 0 0.914945226008827 NA NA prediction 0.829890452017653 Functional Gain - IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205194 chr13:21205194 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42557 0 0 0 0 2 IFT88 chr13:21205155 3'AG 21205155 Downstream 40bp 39117 chr13 21205194 21205194 1 + A G COAD 21205194 + 21205174 21205214 41 TGTTGGAAAAAAAGGACAGTAGAGTGAAAAGTGCAGCTGCA TGTTGGAAAAAAAGGACAGTGGAGTGAAAAGTGCAGCTGCA Direct Gain 0 0.914945226008827 NA NA prediction 0.829890452017653 Functional Gain - IFT88 ENSG00000032742 CDS Human protein_coding chr13:21205194 chr13:21205194 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42557 0 0 0 0 2 IFT88 chr13:21205241 5'GT 21205241 Upstream 48bp 39118 chr17 35297737 35297737 1 + C G LUSC 35297737 + 35297717 35297757 41 GGCGAGGAACTCTACATCATCGACGAGAATAAGTTCGTCTG GGCGAGGAACTCTACATCATGGACGAGAATAAGTTCGTCTG Direct Gain 0 0.914938119884432 NA NA prediction 0.829876239768863 Functional Gain - LHX1 ENSG00000132130 CDS Human other chr17:35297737 chr17:35297737 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_42558 0 0 0 0 1 LHX1 chr17:35297813 5'GT 35297813 Upstream 77bp 39119 chr10 75673797 75673797 1 + A G PRAD 75673797 + 75673777 75673817 41 TCGCTCAAGGCTTAACTCCAACACGCAAGGGGAGATGAAGT TCGCTCAAGGCTTAACTCCAGCACGCAAGGGGAGATGAAGT Direct Gain 0 0.914927461960288 NA NA prediction 0.829854923920577 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673797 chr10:75673797 nonsynonymous SNV 0.001 1 21 hm7G_associated_SNPs_42560 0 0 0 0 2 PLAU chr10:75673738 3'AG 75673738 Downstream 60bp 39120 chr10 75673797 75673797 1 + A G PRAD 75673797 + 75673777 75673817 41 TCGCTCAAGGCTTAACTCCAACACGCAAGGGGAGATGAAGT TCGCTCAAGGCTTAACTCCAGCACGCAAGGGGAGATGAAGT Direct Gain 0 0.914927461960288 NA NA prediction 0.829854923920577 Functional Gain - PLAU ENSG00000122861 CDS Human protein_coding chr10:75673797 chr10:75673797 nonsynonymous SNV 0.001 1 21 hm7G_associated_SNPs_42560 0 0 0 0 2 PLAU chr10:75673886 5'GT 75673886 Upstream 90bp 39121 chr17 1680578 1680578 1 + C G SKCM 1680578 + 1680558 1680598 41 CGGGCTGGCTTTGAGTGGAACGAGGATGGGGCGGGAACCAC CGGGCTGGCTTTGAGTGGAAGGAGGATGGGGCGGGAACCAC Direct Gain 0 0.914888084024556 NA NA prediction 0.829776168049113 Functional Gain - SERPINF1 ENSG00000132386 CDS Human protein_coding chr17:1680578 chr17:1680578 nonsynonymous SNV 0.869 3 21 hm7G_associated_SNPs_42564 0 0 1 0 1 SERPINF1 chr17:1680481 3'AG 1680481 Downstream 98bp 39122 chr2 173354325 173354325 1 + C G UCEC 173354325 + 173354305 173354345 41 TTATTTGGTGAAAGTAGAATCCAAAGGATTGGAAAAGGTAA TTATTTGGTGAAAGTAGAATGCAAAGGATTGGAAAAGGTAA Direct Gain 0 0.914883106157823 NA NA prediction 0.829766212315646 Functional Gain - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173354325 chr2:173354325 nonsynonymous SNV 0.954 3 21 hm7G_associated_SNPs_42566 0 0 1 0 2 ITGA6 chr2:173354341 5'GT 173354341 Upstream 17bp 39123 chr2 173354325 173354325 1 + C G UCEC 173354325 + 173354305 173354345 41 TTATTTGGTGAAAGTAGAATCCAAAGGATTGGAAAAGGTAA TTATTTGGTGAAAGTAGAATGCAAAGGATTGGAAAAGGTAA Direct Gain 0 0.914883106157823 NA NA prediction 0.829766212315646 Functional Gain - ITGA6 ENSG00000091409 CDS Human protein_coding chr2:173354325 chr2:173354325 nonsynonymous SNV 0.954 3 21 hm7G_associated_SNPs_42566 0 0 1 0 2 ITGA6 chr2:173354386 5'GT 173354386 Upstream 62bp 39124 chr19 39590977 39590977 1 + C G LUAD 39590977 + 39590957 39590997 41 ACATGACATGCCCTGGGAATCATGAAGAACGCTAGTGAGGA ACATGACATGCCCTGGGAATGATGAAGAACGCTAGTGAGGA Direct Gain 0 0.914875041266095 NA NA prediction 0.829750082532191 Functional Gain - ACP7 ENSG00000183760 CDS Human protein_coding chr19:39590977 chr19:39590977 nonsynonymous SNV 0.739 5 21 hm7G_associated_SNPs_42567 0 0 0 0 1 ACP7 chr19:39590990 5'GT 39590990 Upstream 14bp 39125 chr16 22826339 22826339 1 + A G rs208951 22826339 + 22826319 22826359 41 GTGCTGGAGTTTATCCGAGTACACCCGGACGTGCGGGCCTT GTGCTGGAGTTTATCCGAGTGCACCCGGACGTGCGGGCCTT Direct Gain 0 0.914869934646213 NA NA prediction 0.829739869292427 Functional Gain - HS3ST2 ENSG00000122254 CDS Human protein_coding chr16:22826339 chr16:22826339 synonymous SNV . 0 21 hm7G_associated_SNPs_42568 0 0 0 0 1 HS3ST2 chr16:22826416 5'GT 22826416 Upstream 78bp 39126 chr1 65876998 65876998 1 + A G COAD 65876998 + 65876978 65877018 41 CTTTCCACGATGCATACCGTACTATGGGCTGGGGAGACCAA CTTTCCACGATGCATACCGTGCTATGGGCTGGGGAGACCAA Direct Gain 0 0.914856325883747 NA NA prediction 0.829712651767494 Functional Gain - DNAJC6 ENSG00000116675 CDS Human protein_coding chr1:65876998 chr1:65876998 synonymous SNV . 0 21 hm7G_associated_SNPs_42569 0 0 1 0 1 DNAJC6 chr1:65876933 3'AG 65876933 Downstream 66bp 39127 chr16 67644809 67644809 1 + A G UCEC 67644809 + 67644789 67644829 41 AGGAAAGGAGAGAAAGACTTACCAGAGACGCCGGGAAGGGG AGGAAAGGAGAGAAAGACTTGCCAGAGACGCCGGGAAGGGG Direct Gain 0 0.914838363267567 NA NA prediction 0.829676726535134 Functional Gain - CTCF ENSG00000102974 CDS Human protein_coding chr16:67644809 chr16:67644809 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42573 0 0 1 0 1 CTCF chr16:67644727 3'AG 67644727 Downstream 83bp 39128 chr7 56123419 56123419 1 + A G COAD 56123419 + 56123399 56123439 41 GCAGAGAGATGGACAGGGAAACACTTATAGATGTGGCCAGA GCAGAGAGATGGACAGGGAAGCACTTATAGATGTGGCCAGA Direct Gain 0 0.914812193205002 NA NA prediction 0.829624386410003 Functional Gain - CCT6A ENSG00000146731 CDS Human protein_coding chr7:56123419 chr7:56123419 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_42578 0 0 1 0 1 CCT6A chr7:56123490 5'GT 56123490 Upstream 72bp 39129 chr12 31249285 31249285 1 + A G UCEC 31249285 + 31249265 31249305 41 GTTTTTGCAGGTGCAGCGATACTGTGAGAAGAGCATGATCA GTTTTTGCAGGTGCAGCGATGCTGTGAGAAGAGCATGATCA Direct Gain 0 0.914809925311599 NA NA prediction 0.829619850623198 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31249285 chr12:31249285 nonsynonymous SNV 0.829 4 21 hm7G_associated_SNPs_42579 0 0 0 2 2 DDX11 chr12:31249275 3'AG 31249275 Downstream 11bp 39130 chr12 31249285 31249285 1 + A G UCEC 31249285 + 31249265 31249305 41 GTTTTTGCAGGTGCAGCGATACTGTGAGAAGAGCATGATCA GTTTTTGCAGGTGCAGCGATGCTGTGAGAAGAGCATGATCA Direct Gain 0 0.914809925311599 NA NA prediction 0.829619850623198 Functional Gain - DDX11 ENSG00000013573 CDS Human protein_coding chr12:31249285 chr12:31249285 nonsynonymous SNV 0.829 4 21 hm7G_associated_SNPs_42579 0 0 0 2 2 DDX11 chr12:31249313 5'GT 31249313 Upstream 29bp 39131 chr22 38266210 38266210 1 + A G STAD 38266210 + 38266190 38266230 41 CATTCAGTCAGTACCGCTGTAAGACTGCCAAGAAGTCAGAG CATTCAGTCAGTACCGCTGTGAGACTGCCAAGAAGTCAGAG Direct Gain 0 0.914771127174965 NA NA prediction 0.82954225434993 Functional Gain - EIF3L ENSG00000100129 CDS Human protein_coding chr22:38266210 chr22:38266210 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_42583 0 0 1 0 1 EIF3L chr22:38266183 3'AG 38266183 Downstream 28bp 39132 chr19 4323176 4323176 1 + C G BLCA 4323176 + 4323156 4323196 41 GCCAAGCACGCCAACAAGGTCAAGGTGCTGGACGCCCCCGT GCCAAGCACGCCAACAAGGTGAAGGTGCTGGACGCCCCCGT Direct Gain 0 0.914768516321669 NA NA prediction 0.829537032643337 Functional Gain - FSD1 ENSG00000105255 CDS Human protein_coding chr19:4323176 chr19:4323176 nonsynonymous SNV . 0 21 hm7G_associated_SNPs_42584 0 0 1 0 1 FSD1 chr19:4323234 5'GT 4323234 Upstream 59bp 39133 chr20 36937422 36937422 1 + C G LUAD 36937422 + 36937402 36937442 41 TCCATCAGCAACGCCAATATCAAGATCAGCGGGAAATGGAA TCCATCAGCAACGCCAATATGAAGATCAGCGGGAAATGGAA Direct Gain 0 0.914768357101277 NA NA prediction 0.829536714202553 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36937422 chr20:36937422 nonsynonymous SNV 0.113 2 21 hm7G_associated_SNPs_42585 0 0 0 0 2 BPI chr20:36937332 3'AG 36937332 Downstream 91bp 39134 chr20 36937422 36937422 1 + C G LUAD 36937422 + 36937402 36937442 41 TCCATCAGCAACGCCAATATCAAGATCAGCGGGAAATGGAA TCCATCAGCAACGCCAATATGAAGATCAGCGGGAAATGGAA Direct Gain 0 0.914768357101277 NA NA prediction 0.829536714202553 Functional Gain - BPI ENSG00000101425 CDS Human protein_coding chr20:36937422 chr20:36937422 nonsynonymous SNV 0.113 2 21 hm7G_associated_SNPs_42585 0 0 0 0 2 BPI chr20:36937460 5'GT 36937460 Upstream 39bp 39135 chr2 37321281 37321281 1 + A G KIRC 37321281 + 37321261 37321301 41 AGGCTTGAAGAGGAGACTGAAGAAGATGAAGAAGAAAAAGA AGGCTTGAAGAGGAGACTGAGGAAGATGAAGAAGAAAAAGA Direct Gain 0 0.914750391210722 NA NA prediction 0.829500782421444 Functional Gain - GPATCH11 ENSG00000152133 CDS Human protein_coding chr2:37321281 chr2:37321281 synonymous SNV . 0 21 hm7G_associated_SNPs_42586 0 0 1 0 1 GPATCH11 chr2:37321225 3'AG 37321225 Downstream 57bp 39136 chr1 28282269 28282269 1 + C G CESC 28282269 + 28282249 28282289 41 GCATGGTTCCGGGAGGGCTTCAATGAAAAATACCTGAAGGT GCATGGTTCCGGGAGGGCTTGAATGAAAAATACCTGAAGGT Direct Gain 0 0.91473056245862 NA NA prediction 0.829461124917239 Functional Gain - SMPDL3B ENSG00000130768 CDS Human protein_coding chr1:28282269 chr1:28282269 nonsynonymous SNV 0.143 5 21 hm7G_associated_SNPs_42587 0 0 0 0 1 SMPDL3B chr1:28282195 3'AG 28282195 Downstream 75bp 39137 chr17 52993211 52993211 1 + A G UCEC 52993211 + 52993191 52993231 41 TCTGAAAACCATGAAGACATAGAGCTTCTGCAGGTGTTGTA TCTGAAAACCATGAAGACATGGAGCTTCTGCAGGTGTTGTA Direct Gain 0 0.914727695133055 NA NA prediction 0.829455390266109 Functional Gain - TOM1L1 ENSG00000141198 CDS Human protein_coding chr17:52993211 chr17:52993211 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42588 0 0 1 1 1 TOM1L1 chr17:52993223 5'GT 52993223 Upstream 13bp 39138 chr8 24257698 24257698 1 + A G COAD 24257698 + 24257678 24257718 41 TCCAGGCTAAAAAAAAGAATAATGTGGCTCTTGTAGGAGTG TCCAGGCTAAAAAAAAGAATGATGTGGCTCTTGTAGGAGTG Direct Gain 0 0.914719814975088 NA NA prediction 0.829439629950175 Functional Gain - ADAMDEC1 ENSG00000134028 CDS Human protein_coding chr8:24257698 chr8:24257698 nonsynonymous SNV 0.803 0 21 hm7G_associated_SNPs_42589 0 0 0 0 1 ADAMDEC1 chr8:24257683 3'AG 24257683 Downstream 16bp 39139 chr3 8543661 8543661 1 + A G STAD 8543661 + 8543641 8543681 41 AGGACCTCAACCCAGGAGTTAAAAAGGTGAGTGGAAAGCTG AGGACCTCAACCCAGGAGTTGAAAAGGTGAGTGGAAAGCTG Direct Gain 0 0.91468067839603 NA NA prediction 0.82936135679206 Functional Gain - LMCD1 ENSG00000071282 CDS Human protein_coding chr3:8543661 chr3:8543661 nonsynonymous SNV 0.814 0 21 hm7G_associated_SNPs_42593 0 0 0 0 1 LMCD1 chr3:8543666 5'GT 8543666 Upstream 6bp 39140 chr9 137777666 137777666 1 + C G rs146926928 137777666 + 137777646 137777686 41 CTTCTACCGGGACTGGGCCACGTACAAGCAGGGCTTCGGCA CTTCTACCGGGACTGGGCCAGGTACAAGCAGGGCTTCGGCA Direct Gain 0 0.914674179290876 NA NA prediction 0.829348358581752 Functional Gain - FCN2 ENSG00000160339 CDS Human protein_coding chr9:137777666 chr9:137777666 nonsynonymous SNV 0.124 2 21 hm7G_associated_SNPs_42595 0 0 0 0 1 FCN2 chr9:137777614 3'AG 137777614 Downstream 53bp 39141 chr6 144181649 144181649 1 + A G rs2092714 144181649 + 144181629 144181669 41 CAAGTGGACAGCAATCGCTTACAGGAAGTTTTGAATGACTA CAAGTGGACAGCAATCGCTTGCAGGAAGTTTTGAATGACTA Direct Gain 0 0.914652329672056 NA NA prediction 0.829304659344113 Functional Gain - LTV1 ENSG00000135521 CDS Human protein_coding chr6:144181649 chr6:144181649 synonymous SNV . 0 21 hm7G_associated_SNPs_42597 0 0 1 0 2 LTV1 chr6:144181563 3'AG 144181563 Downstream 87bp 39142 chr6 144181649 144181649 1 + A G rs2092714 144181649 + 144181629 144181669 41 CAAGTGGACAGCAATCGCTTACAGGAAGTTTTGAATGACTA CAAGTGGACAGCAATCGCTTGCAGGAAGTTTTGAATGACTA Direct Gain 0 0.914652329672056 NA NA prediction 0.829304659344113 Functional Gain - LTV1 ENSG00000135521 CDS Human protein_coding chr6:144181649 chr6:144181649 synonymous SNV . 0 21 hm7G_associated_SNPs_42597 0 0 1 0 2 LTV1 chr6:144181690 5'GT 144181690 Upstream 42bp 39143 chr15 64716342 64716342 1 + C G LUAD 64716342 + 64716322 64716362 41 TCCAGGCTACATATCGTCTTCTTCGTGGGAAAGGTAACAGC TCCAGGCTACATATCGTCTTGTTCGTGGGAAAGGTAACAGC Direct Gain 0 0.914640826897272 NA NA prediction 0.829281653794543 Functional Gain - TRIP4 ENSG00000103671 CDS Human protein_coding chr15:64716342 chr15:64716342 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_42598 0 0 1 0 1 TRIP4 chr15:64716354 5'GT 64716354 Upstream 13bp 39144 chr16 106559 106559 1 + A G UCEC 106559 + 106539 106579 41 GTCCTACGTGTGGAGGACGTACCATCTGACCTCTGCAGGAG GTCCTACGTGTGGAGGACGTGCCATCTGACCTCTGCAGGAG Direct Gain 0 0.914633702514311 NA NA prediction 0.829267405028621 Functional Gain - SNRNP25 ENSG00000161981 CDS Human protein_coding chr16:106559 chr16:106559 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_42600 0 0 1 1 1 SNRNP25 chr16:106539 3'AG 106539 Downstream 21bp 39145 chr20 21312985 21312985 1 + C G BLCA 21312985 + 21312965 21313005 41 ACCATTATTAGAGAAGAATTCAAACCAAACAAGCCCAAACC ACCATTATTAGAGAAGAATTGAAACCAAACAAGCCCAAACC Direct Gain 0 0.914613092560712 NA NA prediction 0.829226185121424 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312985 chr20:21312985 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42601 0 0 1 0 2 XRN2 chr20:21312921 3'AG 21312921 Downstream 65bp 39146 chr20 21312985 21312985 1 + C G BLCA 21312985 + 21312965 21313005 41 ACCATTATTAGAGAAGAATTCAAACCAAACAAGCCCAAACC ACCATTATTAGAGAAGAATTGAAACCAAACAAGCCCAAACC Direct Gain 0 0.914613092560712 NA NA prediction 0.829226185121424 Functional Gain - XRN2 ENSG00000088930 CDS Human protein_coding chr20:21312985 chr20:21312985 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42601 0 0 1 0 2 XRN2 chr20:21313078 5'GT 21313078 Upstream 94bp 39147 chr4 39274621 39274621 1 + C G LUSC 39274621 + 39274601 39274641 41 TTCATGTTAAAAATGGAGATCACATGAAAGGGGCTCGCATG TTCATGTTAAAAATGGAGATGACATGAAAGGGGCTCGCATG Direct Gain 0 0.914580594044669 NA NA prediction 0.829161188089339 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39274621 chr4:39274621 nonsynonymous SNV 0.961 3 21 hm7G_associated_SNPs_42605 0 0 0 0 2 WDR19 chr4:39274600 3'AG 39274600 Downstream 22bp 39148 chr4 39274621 39274621 1 + C G LUSC 39274621 + 39274601 39274641 41 TTCATGTTAAAAATGGAGATCACATGAAAGGGGCTCGCATG TTCATGTTAAAAATGGAGATGACATGAAAGGGGCTCGCATG Direct Gain 0 0.914580594044669 NA NA prediction 0.829161188089339 Functional Gain - WDR19 ENSG00000157796 CDS Human protein_coding chr4:39274621 chr4:39274621 nonsynonymous SNV 0.961 3 21 hm7G_associated_SNPs_42605 0 0 0 0 2 WDR19 chr4:39274681 5'GT 39274681 Upstream 61bp 39149 chr8 16962937 16962937 1 + C G PCPG 16962937 + 16962917 16962957 41 CATAGATTCATGGATAATCTCCAAACAGAAGTTCTAGAAAT CATAGATTCATGGATAATCTGCAAACAGAAGTTCTAGAAAT Direct Gain 0 0.914570888918902 NA NA prediction 0.829141777837805 Functional Gain - MICU3 ENSG00000155970 CDS Human protein_coding chr8:16962937 chr8:16962937 synonymous SNV . 0 21 hm7G_associated_SNPs_42606 0 0 0 0 1 MICU3 chr8:16962922 3'AG 16962922 Downstream 16bp 39150 chr7 141747658 141747658 1 + A G rs2960746 141747658 + 141747638 141747678 41 AAGGAGAACTTTTCTGGGATAATGGGGAAACGAAGGGTGAG AAGGAGAACTTTTCTGGGATGATGGGGAAACGAAGGGTGAG Direct Gain 0 0.914564749045172 NA NA prediction 0.829129498090345 Functional Gain - MGAM ENSG00000257335 CDS Human protein_coding chr7:141747658 chr7:141747658 nonsynonymous SNV 0.994 0 21 hm7G_associated_SNPs_42607 0 0 0 0 1 MGAM chr7:141747585 3'AG 141747585 Downstream 74bp 39151 chr9 140150783 140150783 1 + A G LUAD 140150783 + 140150763 140150803 41 TCCTGTGAGTTGTTCCAGGTACAAGAAGCTGGAAGACCTTC TCCTGTGAGTTGTTCCAGGTGCAAGAAGCTGGAAGACCTTC Direct Gain 0 0.914559596967592 NA NA prediction 0.829119193935185 Functional Gain - NELFB ENSG00000188986 CDS Human protein_coding chr9:140150783 chr9:140150783 nonsynonymous SNV 0.904 2 21 hm7G_associated_SNPs_42608 0 0 1 0 2 NELFB chr9:140150781 3'AG 140150781 Downstream 3bp 39152 chr9 140150783 140150783 1 + A G LUAD 140150783 + 140150763 140150803 41 TCCTGTGAGTTGTTCCAGGTACAAGAAGCTGGAAGACCTTC TCCTGTGAGTTGTTCCAGGTGCAAGAAGCTGGAAGACCTTC Direct Gain 0 0.914559596967592 NA NA prediction 0.829119193935185 Functional Gain - NELFB ENSG00000188986 CDS Human protein_coding chr9:140150783 chr9:140150783 nonsynonymous SNV 0.904 2 21 hm7G_associated_SNPs_42608 0 0 1 0 2 NELFB chr9:140150880 5'GT 140150880 Upstream 98bp 39153 chr16 57741439 57741439 1 + C G LUAD 57741439 + 57741419 57741459 41 CTCCTGGGTCCTTGTGCTATCGGGGAAGCGCGAGGTGCCTG CTCCTGGGTCCTTGTGCTATGGGGGAAGCGCGAGGTGCCTG Direct Gain 0 0.914553876531841 NA NA prediction 0.829107753063682 Functional Gain - DRC7 ENSG00000159625 CDS Human protein_coding chr16:57741439 chr16:57741439 nonsynonymous SNV 0.238 3 21 hm7G_associated_SNPs_42610 0 0 0 0 1 DRC7 chr16:57741372 3'AG 57741372 Downstream 68bp 39154 chr1 41250028 41250028 1 + A G STAD 41250028 + 41250008 41250048 41 CCGCCTGCAGAACTGGGTCTACAACGTGCTGGAGCGGCCCC CCGCCTGCAGAACTGGGTCTGCAACGTGCTGGAGCGGCCCC Direct Gain 0 0.914542725993204 NA NA prediction 0.829085451986407 Functional Gain - KCNQ4 ENSG00000117013 CDS Human protein_coding chr1:41250028 chr1:41250028 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42611 0 0 1 0 1 KCNQ4 chr1:41250079 5'GT 41250079 Upstream 52bp 39155 chr20 13251161 13251161 1 + A G UCEC 13251161 + 13251141 13251181 41 TTTGTTTTAGAATAACCTCAACGTGGGAAGTGACACCACAT TTTGTTTTAGAATAACCTCAGCGTGGGAAGTGACACCACAT Direct Gain 0 0.914535760809093 NA NA prediction 0.829071521618186 Functional Gain - ISM1 ENSG00000101230 CDS Human protein_coding chr20:13251161 chr20:13251161 nonsynonymous SNV 0.990 1 21 hm7G_associated_SNPs_42612 0 0 0 0 1 ISM1 chr20:13251151 3'AG 13251151 Downstream 11bp 39156 chr18 20577615 20577615 1 + A G LUAD 20577615 + 20577595 20577635 41 TCAAAATTAGGAGGAGAGACAGTGGACATGGACTGTACATT TCAAAATTAGGAGGAGAGACGGTGGACATGGACTGTACATT Direct Gain 0 0.914527378793919 NA NA prediction 0.829054757587838 Functional Gain - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20577615 chr18:20577615 synonymous SNV . 0 21 hm7G_associated_SNPs_42613 0 0 1 0 2 RBBP8 chr18:20577583 3'AG 20577583 Downstream 33bp 39157 chr18 20577615 20577615 1 + A G LUAD 20577615 + 20577595 20577635 41 TCAAAATTAGGAGGAGAGACAGTGGACATGGACTGTACATT TCAAAATTAGGAGGAGAGACGGTGGACATGGACTGTACATT Direct Gain 0 0.914527378793919 NA NA prediction 0.829054757587838 Functional Gain - RBBP8 ENSG00000101773 CDS Human protein_coding chr18:20577615 chr18:20577615 synonymous SNV . 0 21 hm7G_associated_SNPs_42613 0 0 1 0 2 RBBP8 chr18:20577697 5'GT 20577697 Upstream 83bp 39158 chr1 9022710 9022710 1 + A G UCEC 9022710 + 9022690 9022730 41 TCATCTGGCCAACATCAAGTACCCAGGTAAGGGAAGCCAAC TCATCTGGCCAACATCAAGTGCCCAGGTAAGGGAAGCCAAC Direct Gain 0 0.914521894054498 NA NA prediction 0.829043788108996 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9022710 chr1:9022710 nonsynonymous SNV 0.478 2 21 hm7G_associated_SNPs_42614 0 0 0 0 2 CA6 chr1:9022646 3'AG 9022646 Downstream 65bp 39159 chr1 9022710 9022710 1 + A G UCEC 9022710 + 9022690 9022730 41 TCATCTGGCCAACATCAAGTACCCAGGTAAGGGAAGCCAAC TCATCTGGCCAACATCAAGTGCCCAGGTAAGGGAAGCCAAC Direct Gain 0 0.914521894054498 NA NA prediction 0.829043788108996 Functional Gain - CA6 ENSG00000131686 CDS Human protein_coding chr1:9022710 chr1:9022710 nonsynonymous SNV 0.478 2 21 hm7G_associated_SNPs_42614 0 0 0 0 2 CA6 chr1:9022715 5'GT 9022715 Upstream 6bp 39160 chr10 5247784 5247784 1 + C G rs3829125 5247784 + 5247764 5247804 41 ATTCGACACAGTGGATCTCTCTGCCACATGGGAGGTGAGTG ATTCGACACAGTGGATCTCTGTGCCACATGGGAGGTGAGTG Direct Gain 0 0.914519512329201 NA NA prediction 0.829039024658403 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5247784 chr10:5247784 nonsynonymous SNV 0.974 0 21 hm7G_associated_SNPs_42615 0 0 0 0 2 AKR1C4 chr10:5247720 3'AG 5247720 Downstream 65bp 39161 chr10 5247784 5247784 1 + C G rs3829125 5247784 + 5247764 5247804 41 ATTCGACACAGTGGATCTCTCTGCCACATGGGAGGTGAGTG ATTCGACACAGTGGATCTCTGTGCCACATGGGAGGTGAGTG Direct Gain 0 0.914519512329201 NA NA prediction 0.829039024658403 Functional Gain - AKR1C4 ENSG00000198610 CDS Human protein_coding chr10:5247784 chr10:5247784 nonsynonymous SNV 0.974 0 21 hm7G_associated_SNPs_42615 0 0 0 0 2 AKR1C4 chr10:5247797 5'GT 5247797 Upstream 14bp 39162 chr9 75773638 75773638 1 + C G BLCA 75773638 + 75773618 75773658 41 TGAAGTCATCCAAAGGTGGTCCCGGATCAGCGGTGAGCCCC TGAAGTCATCCAAAGGTGGTGCCGGATCAGCGGTGAGCCCC Direct Gain 0 0.914488582126911 NA NA prediction 0.828977164253821 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75773638 chr9:75773638 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_42617 0 0 1 0 2 ANXA1 chr9:75773611 3'AG 75773611 Downstream 28bp 39163 chr9 75773638 75773638 1 + C G BLCA 75773638 + 75773618 75773658 41 TGAAGTCATCCAAAGGTGGTCCCGGATCAGCGGTGAGCCCC TGAAGTCATCCAAAGGTGGTGCCGGATCAGCGGTGAGCCCC Direct Gain 0 0.914488582126911 NA NA prediction 0.828977164253821 Functional Gain - ANXA1 ENSG00000135046 CDS Human protein_coding chr9:75773638 chr9:75773638 nonsynonymous SNV 0.997 0 21 hm7G_associated_SNPs_42617 0 0 1 0 2 ANXA1 chr9:75773719 5'GT 75773719 Upstream 82bp 39164 chr1 151551265 151551265 1 + A G rs16833395 151551265 + 151551245 151551285 41 CCACTTGGATGACATGCTCAAGAGCCAGCAGCGGAAAGTCC CCACTTGGATGACATGCTCAGGAGCCAGCAGCGGAAAGTCC Direct Gain 0 0.91447994552812 NA NA prediction 0.828959891056239 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151551265 chr1:151551265 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_42619 0 0 1 0 2 TUFT1 chr1:151551197 3'AG 151551197 Downstream 69bp 39165 chr1 151551265 151551265 1 + A G rs16833395 151551265 + 151551245 151551285 41 CCACTTGGATGACATGCTCAAGAGCCAGCAGCGGAAAGTCC CCACTTGGATGACATGCTCAGGAGCCAGCAGCGGAAAGTCC Direct Gain 0 0.91447994552812 NA NA prediction 0.828959891056239 Functional Gain - TUFT1 ENSG00000143367 CDS Human protein_coding chr1:151551265 chr1:151551265 nonsynonymous SNV 0.998 3 21 hm7G_associated_SNPs_42619 0 0 1 0 2 TUFT1 chr1:151551302 5'GT 151551302 Upstream 38bp 39166 chr14 23346022 23346022 1 + A G LUAD 23346022 + 23346002 23346042 41 ACTTTCCTACAGAGAATCCTAATGATGTAAGTCACTCCCCA ACTTTCCTACAGAGAATCCTGATGATGTAAGTCACTCCCCA Direct Gain 0 0.914471228818855 NA NA prediction 0.82894245763771 Functional Gain - LRP10 ENSG00000197324 CDS Human protein_coding chr14:23346022 chr14:23346022 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42621 0 0 1 0 1 LRP10 chr14:23346027 5'GT 23346027 Upstream 6bp 39167 chr16 72110257 72110257 1 + C G rs201615147 72110257 + 72110237 72110277 41 CAGCGGATCCTGGGTGGACACCTGGATGCCAAAGGCAGCTT CAGCGGATCCTGGGTGGACAGCTGGATGCCAAAGGCAGCTT Direct Gain 0 0.914457161230085 NA NA prediction 0.828914322460171 Functional Gain - HPR ENSG00000261701 CDS Human protein_coding chr16:72110257 chr16:72110257 nonsynonymous SNV 0.040 1 21 hm7G_associated_SNPs_42623 0 0 0 0 1 HPR chr16:72110202 3'AG 72110202 Downstream 56bp 39168 chr3 39116415 39116415 1 + T G UCEC 39116415 + 39116395 39116435 41 CTGACATTCGGGTGCTAATTTGTGAAGAAAAAGCACCAGTT CTGACATTCGGGTGCTAATTGGTGAAGAAAAAGCACCAGTT Direct Gain 0 0.914452001886894 NA NA prediction 0.828904003773787 Functional Gain - WDR48 ENSG00000114742 CDS Human protein_coding chr3:39116415 chr3:39116415 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42624 0 0 1 0 1 WDR48 chr3:39116441 5'GT 39116441 Upstream 27bp 39169 chr21 37443336 37443336 1 + C G CESC 37443336 + 37443316 37443356 41 GATGTGTGCACAGAATTACTCCCTCTAATAAAACCCCAAGG GATGTGTGCACAGAATTACTGCCTCTAATAAAACCCCAAGG Direct Gain 0 0.914396627240276 NA NA prediction 0.828793254480552 Functional Gain - CBR1 ENSG00000159228 CDS Human protein_coding chr21:37443336 chr21:37443336 synonymous SNV . 0 21 hm7G_associated_SNPs_42625 0 0 1 0 2 CBR1 chr21:37443248 3'AG 37443248 Downstream 89bp 39170 chr21 37443336 37443336 1 + C G CESC 37443336 + 37443316 37443356 41 GATGTGTGCACAGAATTACTCCCTCTAATAAAACCCCAAGG GATGTGTGCACAGAATTACTGCCTCTAATAAAACCCCAAGG Direct Gain 0 0.914396627240276 NA NA prediction 0.828793254480552 Functional Gain - CBR1 ENSG00000159228 CDS Human protein_coding chr21:37443336 chr21:37443336 synonymous SNV . 0 21 hm7G_associated_SNPs_42625 0 0 1 0 2 CBR1 chr21:37443355 5'GT 37443355 Upstream 20bp 39171 chrX 135618224 135618224 1 + A G rs3027859 135618224 + 135618204 135618244 41 ATCCGGCTGCCCAAAGGCAAACAGAAGCCTATAAAGACGGA ATCCGGCTGCCCAAAGGCAAGCAGAAGCCTATAAAGACGGA Direct Gain 0 0.914392355415345 NA NA prediction 0.82878471083069 Functional Gain - VGLL1 ENSG00000102243 CDS Human protein_coding chrX:135618224 chrX:135618224 synonymous SNV . 0 21 hm7G_associated_SNPs_42626 0 0 0 0 1 VGLL1 chrX:135618155 3'AG 135618155 Downstream 70bp 39172 chr22 18894235 18894235 1 + C G CESC 18894235 + 18894215 18894255 41 TGCGCCTACAGAACGAGCATCGAGGTGCGCGGGGGCAGCGG TGCGCCTACAGAACGAGCATGGAGGTGCGCGGGGGCAGCGG Direct Gain 0 0.914380687288972 NA NA prediction 0.828761374577943 Functional Gain - DGCR6 ENSG00000183628 CDS Human protein_coding chr22:18894235 chr22:18894235 nonsynonymous SNV 0.991 1 21 hm7G_associated_SNPs_42628 0 0 0 0 1 DGCR6 chr22:18894238 5'GT 18894238 Upstream 4bp 39173 chr2 216191603 216191603 1 + A G LUSC 216191603 + 216191583 216191623 41 AGATTATTTCAGGAAACAGTACAGCAAAGGCGTATCTCAGA AGATTATTTCAGGAAACAGTGCAGCAAAGGCGTATCTCAGA Direct Gain 0 0.914347846211101 NA NA prediction 0.828695692422201 Functional Gain - ATIC ENSG00000138363 CDS Human protein_coding chr2:216191603 chr2:216191603 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_42630 0 0 1 0 2 ATIC chr2:216191545 3'AG 216191545 Downstream 59bp 39174 chr2 216191603 216191603 1 + A G LUSC 216191603 + 216191583 216191623 41 AGATTATTTCAGGAAACAGTACAGCAAAGGCGTATCTCAGA AGATTATTTCAGGAAACAGTGCAGCAAAGGCGTATCTCAGA Direct Gain 0 0.914347846211101 NA NA prediction 0.828695692422201 Functional Gain - ATIC ENSG00000138363 CDS Human protein_coding chr2:216191603 chr2:216191603 nonsynonymous SNV 0.994 4 21 hm7G_associated_SNPs_42630 0 0 1 0 2 ATIC chr2:216191701 5'GT 216191701 Upstream 99bp 39175 chr6 84765089 84765089 1 + A G UCEC 84765089 + 84765069 84765109 41 CCTCCCAGCAATCGGCATCTAATTCTGATTACACCTGGGAA CCTCCCAGCAATCGGCATCTGATTCTGATTACACCTGGGAA Direct Gain 0 0.914324278909898 NA NA prediction 0.828648557819796 Functional Gain - MRAP2 ENSG00000135324 CDS Human protein_coding chr6:84765089 chr6:84765089 nonsynonymous SNV 0.807 2 21 hm7G_associated_SNPs_42633 0 0 1 0 2 MRAP2 chr6:84765031 3'AG 84765031 Downstream 59bp 39176 chr6 84765089 84765089 1 + A G UCEC 84765089 + 84765069 84765109 41 CCTCCCAGCAATCGGCATCTAATTCTGATTACACCTGGGAA CCTCCCAGCAATCGGCATCTGATTCTGATTACACCTGGGAA Direct Gain 0 0.914324278909898 NA NA prediction 0.828648557819796 Functional Gain - MRAP2 ENSG00000135324 CDS Human protein_coding chr6:84765089 chr6:84765089 nonsynonymous SNV 0.807 2 21 hm7G_associated_SNPs_42633 0 0 1 0 2 MRAP2 chr6:84765164 5'GT 84765164 Upstream 76bp 39177 chr16 85839468 85839468 1 + A G UCEC 85839468 + 85839448 85839488 41 TATCATGTGGCAGAAGCACTATGGTGAGTAGAGAGGGAGGA TATCATGTGGCAGAAGCACTGTGGTGAGTAGAGAGGGAGGA Direct Gain 0 0.914311898163154 NA NA prediction 0.828623796326307 Functional Gain - COX4I1 ENSG00000131143 CDS Human protein_coding chr16:85839468 chr16:85839468 nonsynonymous SNV 0.215 3 21 hm7G_associated_SNPs_42634 0 0 1 0 1 COX4I1 chr16:85839470 5'GT 85839470 Upstream 3bp 39178 chr7 96637007 96637007 1 + A G SARC 96637007 + 96636987 96637027 41 CAGGTTCAATGGAAAAGGGAAAAAGATTCGGAAGCCTCGGA CAGGTTCAATGGAAAAGGGAGAAAGATTCGGAAGCCTCGGA Direct Gain 0 0.914301276130501 NA NA prediction 0.828602552261001 Functional Gain - DLX6 ENSG00000006377 CDS Human protein_coding chr7:96637007 chr7:96637007 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42635 0 0 0 0 1 DLX6 chr7:96636950 3'AG 96636950 Downstream 58bp 39179 chr11 18357471 18357471 1 + A G SKCM 18357471 + 18357451 18357491 41 AATTCAAGAGGAAAGCAAATAAAGAACTGGAAGAGAAGAAC AATTCAAGAGGAAAGCAAATGAAGAACTGGAAGAGAAGAAC Direct Gain 0 0.914297956340941 NA NA prediction 0.828595912681882 Functional Gain - GTF2H1 ENSG00000110768 CDS Human protein_coding chr11:18357471 chr11:18357471 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42636 0 0 0 0 1 GTF2H1 chr11:18357493 5'GT 18357493 Upstream 23bp 39180 chr14 75989077 75989077 1 + C G rs35112650 75989077 + 75989057 75989097 41 GCTTCAGCCGCTCTCCTCCCCCTGGCAAACAGGTAGAGTCC GCTTCAGCCGCTCTCCTCCCGCTGGCAAACAGGTAGAGTCC Direct Gain 0 0.914272023041452 NA NA prediction 0.828544046082903 Functional Gain - BATF ENSG00000156127 CDS Human protein_coding chr14:75989077 chr14:75989077 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42639 0 0 0 0 1 BATF chr14:75989088 5'GT 75989088 Upstream 12bp 39181 chr10 103587992 103587992 1 + C G HNSC 103587992 + 103587972 103588012 41 TCTACAGTTCCCCGAAGAATCACGGACAAACCAGCCACAAA TCTACAGTTCCCCGAAGAATGACGGACAAACCAGCCACAAA Direct Gain 0 0.914269384494429 NA NA prediction 0.828538768988857 Functional Gain - KCNIP2 ENSG00000120049 CDS Human protein_coding chr10:103587992 chr10:103587992 synonymous SNV . 0 21 hm7G_associated_SNPs_42640 0 0 0 0 1 KCNIP2 chr10:103587938 3'AG 103587938 Downstream 55bp 39182 chr5 56526790 56526790 1 + A G UCEC 56526790 + 56526770 56526810 41 ATTCTGCTATTGGGCGTCCTAATGGAGGTAAAATTTGCTAA ATTCTGCTATTGGGCGTCCTGATGGAGGTAAAATTTGCTAA Direct Gain 0 0.914262586697492 NA NA prediction 0.828525173394984 Functional Gain - GPBP1 ENSG00000062194 CDS Human protein_coding chr5:56526790 chr5:56526790 nonsynonymous SNV 0.999 0 21 hm7G_associated_SNPs_42641 0 0 1 1 1 GPBP1 chr5:56526796 5'GT 56526796 Upstream 7bp 39183 chr14 23072882 23072882 1 + A G UCEC 23072882 + 23072862 23072902 41 GCTTTCCCCTCCGACCAACTAACCCCAGTGAGATCCGTGCA GCTTTCCCCTCCGACCAACTGACCCCAGTGAGATCCGTGCA Direct Gain 0 0.914259570881047 NA NA prediction 0.828519141762094 Functional Gain - ABHD4 ENSG00000100439 CDS Human protein_coding chr14:23072882 chr14:23072882 nonsynonymous SNV 0.943 1 21 hm7G_associated_SNPs_42642 0 0 0 0 1 ABHD4 chr14:23072830 3'AG 23072830 Downstream 53bp 39184 chr9 77755767 77755767 1 + A G STAD 77755767 + 77755747 77755787 41 AAGGTGCTAGAACAGACTTAAGAAACATTGAGAAGAAGCTG AAGGTGCTAGAACAGACTTAGGAAACATTGAGAAGAAGCTG Direct Gain 0 0.914258586295902 NA NA prediction 0.828517172591805 Functional Gain - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77755767 chr9:77755767 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42643 0 0 0 0 2 OSTF1 chr9:77755750 3'AG 77755750 Downstream 18bp 39185 chr9 77755767 77755767 1 + A G STAD 77755767 + 77755747 77755787 41 AAGGTGCTAGAACAGACTTAAGAAACATTGAGAAGAAGCTG AAGGTGCTAGAACAGACTTAGGAAACATTGAGAAGAAGCTG Direct Gain 0 0.914258586295902 NA NA prediction 0.828517172591805 Functional Gain - OSTF1 ENSG00000134996 CDS Human protein_coding chr9:77755767 chr9:77755767 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42643 0 0 0 0 2 OSTF1 chr9:77755848 5'GT 77755848 Upstream 82bp 39186 chr17 47904783 47904783 1 + A G rs147612239 47904783 + 47904763 47904803 41 GACCTGATTGATGAGTGGATAGCCAAAGAGGCCAAAAGGTC GACCTGATTGATGAGTGGATGGCCAAAGAGGCCAAAAGGTC Direct Gain 0 0.914227182188571 NA NA prediction 0.828454364377141 Functional Gain - KAT7 ENSG00000136504 CDS Human protein_coding chr17:47904783 chr17:47904783 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42648 0 0 1 0 1 KAT7 chr17:47904763 3'AG 47904763 Downstream 21bp 39187 chr6 84634296 84634296 1 + C G rs61382555 84634296 + 84634276 84634316 41 AGAATCATAATTCACTTATTCCAAGGAAAGATACAGGTATG AGAATCATAATTCACTTATTGCAAGGAAAGATACAGGTATG Direct Gain 0 0.914218161368874 NA NA prediction 0.828436322737747 Functional Gain - CYB5R4 ENSG00000065615 CDS Human protein_coding chr6:84634296 chr6:84634296 nonsynonymous SNV 0.999 1 21 hm7G_associated_SNPs_42649 0 0 1 0 1 CYB5R4 chr6:84634311 5'GT 84634311 Upstream 16bp 39188 chr8 126019726 126019726 1 + C G ACC 126019726 + 126019706 126019746 41 GATAAAGAGACTGGAGATATCAAGGTGAGAAATACCAAATG GATAAAGAGACTGGAGATATGAAGGTGAGAAATACCAAATG Direct Gain 0 0.914217947966836 NA NA prediction 0.828435895933671 Functional Gain - SQLE ENSG00000104549 CDS Human protein_coding chr8:126019726 chr8:126019726 nonsynonymous SNV 0.546 0 21 hm7G_associated_SNPs_42650 0 0 1 0 2 SQLE chr8:126019633 3'AG 126019633 Downstream 94bp 39189 chr8 126019726 126019726 1 + C G ACC 126019726 + 126019706 126019746 41 GATAAAGAGACTGGAGATATCAAGGTGAGAAATACCAAATG GATAAAGAGACTGGAGATATGAAGGTGAGAAATACCAAATG Direct Gain 0 0.914217947966836 NA NA prediction 0.828435895933671 Functional Gain - SQLE ENSG00000104549 CDS Human protein_coding chr8:126019726 chr8:126019726 nonsynonymous SNV 0.546 0 21 hm7G_associated_SNPs_42650 0 0 1 0 2 SQLE chr8:126019729 5'GT 126019729 Upstream 4bp 39190 chr16 30980962 30980962 1 + C G rs61744449 30980962 + 30980942 30980982 41 AAGATGAGGAAGATGAAGATCGAGAGGAAGCTGTGGATACC AAGATGAGGAAGATGAAGATGGAGAGGAAGCTGTGGATACC Direct Gain 0 0.914214610589248 NA NA prediction 0.828429221178495 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30980962 chr16:30980962 nonsynonymous SNV 0.948 1 21 hm7G_associated_SNPs_42651 0 0 1 0 2 SETD1A chr16:30980923 3'AG 30980923 Downstream 40bp 39191 chr16 30980962 30980962 1 + C G rs61744449 30980962 + 30980942 30980982 41 AAGATGAGGAAGATGAAGATCGAGAGGAAGCTGTGGATACC AAGATGAGGAAGATGAAGATGGAGAGGAAGCTGTGGATACC Direct Gain 0 0.914214610589248 NA NA prediction 0.828429221178495 Functional Gain - SETD1A ENSG00000099381 CDS Human protein_coding chr16:30980962 chr16:30980962 nonsynonymous SNV 0.948 1 21 hm7G_associated_SNPs_42651 0 0 1 0 2 SETD1A chr16:30981010 5'GT 30981010 Upstream 49bp 39192 chr5 169535124 169535124 1 + A G LUAD 169535124 + 169535104 169535144 41 ATGGAAATTTCCGCAGGAAAAGGAAGAGAAAATCAGATGTT ATGGAAATTTCCGCAGGAAAGGGAAGAGAAAATCAGATGTT Direct Gain 0 0.914186226685314 NA NA prediction 0.828372453370628 Functional Gain - FOXI1 ENSG00000168269 CDS Human protein_coding chr5:169535124 chr5:169535124 nonsynonymous SNV 0.999 4 21 hm7G_associated_SNPs_42654 0 0 0 0 1 FOXI1 chr5:169535053 3'AG 169535053 Downstream 72bp 39193 chr6 50696967 50696967 1 + C G STAD 50696967 + 50696947 50696987 41 TTGGATAGGCTTGGCTTAAACTTACCAGCAGGAAGACGGAA TTGGATAGGCTTGGCTTAAAGTTACCAGCAGGAAGACGGAA Direct Gain 0 0.914185953412994 NA NA prediction 0.828371906825988 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50696967 chr6:50696967 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_42655 0 0 0 1 2 TFAP2D chr6:50696907 3'AG 50696907 Downstream 61bp 39194 chr6 50696967 50696967 1 + C G STAD 50696967 + 50696947 50696987 41 TTGGATAGGCTTGGCTTAAACTTACCAGCAGGAAGACGGAA TTGGATAGGCTTGGCTTAAAGTTACCAGCAGGAAGACGGAA Direct Gain 0 0.914185953412994 NA NA prediction 0.828371906825988 Functional Gain - TFAP2D ENSG00000008197 CDS Human protein_coding chr6:50696967 chr6:50696967 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_42655 0 0 0 1 2 TFAP2D chr6:50697025 5'GT 50697025 Upstream 59bp 39195 chr20 42265791 42265791 1 + C G LUAD 42265791 + 42265771 42265811 41 TTATTTCCTTTTAGGTTTTTCCTCCCAGTTTCCGGGAGTTA TTATTTCCTTTTAGGTTTTTGCTCCCAGTTTCCGGGAGTTA Direct Gain 0 0.914161102659173 NA NA prediction 0.828322205318347 Functional Gain - IFT52 ENSG00000101052 CDS Human protein_coding chr20:42265791 chr20:42265791 nonsynonymous SNV 0.997 2 21 hm7G_associated_SNPs_42656 0 0 0 0 1 IFT52 chr20:42265785 3'AG 42265785 Downstream 7bp 39196 chr21 45220480 45220480 1 + A G COAD 45220480 + 45220460 45220500 41 TCAGAACAGAAAGCGTCTCTACAAAGTGATCCGGAAGTGAG TCAGAACAGAAAGCGTCTCTGCAAAGTGATCCGGAAGTGAG Direct Gain 0 0.914157278671768 NA NA prediction 0.828314557343537 Functional Gain - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45220480 chr21:45220480 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42657 0 0 1 0 2 RRP1 chr21:45220398 3'AG 45220398 Downstream 83bp 39197 chr21 45220480 45220480 1 + A G COAD 45220480 + 45220460 45220500 41 TCAGAACAGAAAGCGTCTCTACAAAGTGATCCGGAAGTGAG TCAGAACAGAAAGCGTCTCTGCAAAGTGATCCGGAAGTGAG Direct Gain 0 0.914157278671768 NA NA prediction 0.828314557343537 Functional Gain - RRP1 ENSG00000160214 CDS Human protein_coding chr21:45220480 chr21:45220480 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42657 0 0 1 0 2 RRP1 chr21:45220495 5'GT 45220495 Upstream 16bp 39198 chr3 42728228 42728228 1 + A G UCEC 42728228 + 42728208 42728248 41 CCTCTTCTACAACGAAGACAACAAAGAGGACCCCATGAGCG CCTCTTCTACAACGAAGACAGCAAAGAGGACCCCATGAGCG Direct Gain 0 0.914152617246116 NA NA prediction 0.828305234492231 Functional Gain - KLHL40 ENSG00000157119 CDS Human protein_coding chr3:42728228 chr3:42728228 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42658 0 0 0 0 1 KLHL40 chr3:42728262 5'GT 42728262 Upstream 35bp 39199 chr6 35253980 35253980 1 + A G LIHC 35253980 + 35253960 35254000 41 CATTCACCAGGTGACGGTACAGAAAGGTGAGGGCACCCCAA CATTCACCAGGTGACGGTACGGAAAGGTGAGGGCACCCCAA Direct Gain 0 0.914151629716405 NA NA prediction 0.828303259432811 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35253980 chr6:35253980 nonsynonymous SNV 0.916 1 21 hm7G_associated_SNPs_42659 0 0 1 0 2 ZNF76 chr6:35253905 3'AG 35253905 Downstream 76bp 39200 chr6 35253980 35253980 1 + A G LIHC 35253980 + 35253960 35254000 41 CATTCACCAGGTGACGGTACAGAAAGGTGAGGGCACCCCAA CATTCACCAGGTGACGGTACGGAAAGGTGAGGGCACCCCAA Direct Gain 0 0.914151629716405 NA NA prediction 0.828303259432811 Functional Gain - ZNF76 ENSG00000065029 CDS Human protein_coding chr6:35253980 chr6:35253980 nonsynonymous SNV 0.916 1 21 hm7G_associated_SNPs_42659 0 0 1 0 2 ZNF76 chr6:35253985 5'GT 35253985 Upstream 6bp 39201 chr5 167933029 167933029 1 + T G UCEC 167933029 + 167933009 167933049 41 TGTTTTTTACCCCCTAGGATTTGTGCAGGTGGATGATGGCA TGTTTTTTACCCCCTAGGATGTGTGCAGGTGGATGATGGCA Direct Gain 0 0.914115639493555 NA NA prediction 0.82823127898711 Functional Gain - RARS ENSG00000113643 CDS Human protein_coding chr5:167933029 chr5:167933029 nonsynonymous SNV 0.983 2 21 hm7G_associated_SNPs_42662 0 0 1 0 1 RARS chr5:167933026 3'AG 167933026 Downstream 4bp 39202 chr1 156039504 156039504 1 + C G BLCA 156039504 + 156039484 156039524 41 GGAGACCTCAGCCCTGGACTCTACCAATGTTGAGCTAGCCT GGAGACCTCAGCCCTGGACTGTACCAATGTTGAGCTAGCCT Direct Gain 0 0.914098217866455 NA NA prediction 0.828196435732909 Functional Gain - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156039504 chr1:156039504 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42663 0 0 0 0 2 RAB25 chr1:156039462 3'AG 156039462 Downstream 43bp 39203 chr1 156039504 156039504 1 + C G BLCA 156039504 + 156039484 156039524 41 GGAGACCTCAGCCCTGGACTCTACCAATGTTGAGCTAGCCT GGAGACCTCAGCCCTGGACTGTACCAATGTTGAGCTAGCCT Direct Gain 0 0.914098217866455 NA NA prediction 0.828196435732909 Functional Gain - RAB25 ENSG00000132698 CDS Human protein_coding chr1:156039504 chr1:156039504 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42663 0 0 0 0 2 RAB25 chr1:156039542 5'GT 156039542 Upstream 39bp 39204 chrX 16804661 16804661 1 + A G rs763931883 16804661 + 16804641 16804681 41 GGAAGAGGCGGCGGCGCCGAAGAGGCGACTGAGGCCGGACG GGAAGAGGCGGCGGCGCCGAGGAGGCGACTGAGGCCGGACG Direct Gain 0 0.914086878409306 NA NA prediction 0.828173756818611 Functional Gain - TXLNG ENSG00000086712 CDS Human protein_coding chrX:16804661 chrX:16804661 synonymous SNV . 0 21 hm7G_associated_SNPs_42665 0 0 1 0 1 TXLNG chrX:16804712 5'GT 16804712 Upstream 52bp 39205 chr2 201682996 201682996 1 + T G UCEC 201682996 + 201682976 201683016 41 GAACACTTCACAAAATATTTTACTGAGGCAGGCTTGAAAGA GAACACTTCACAAAATATTTGACTGAGGCAGGCTTGAAAGA Direct Gain 0 0.914080598789323 NA NA prediction 0.828161197578646 Functional Gain - BZW1 ENSG00000082153 CDS Human protein_coding chr2:201682996 chr2:201682996 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_42667 0 0 0 0 1 BZW1 chr2:201682946 3'AG 201682946 Downstream 51bp 39206 chr2 73451115 73451115 1 + T G PAAD 73451115 + 73451095 73451135 41 TGTGAAGGATCTGGCCTCTTTGTGCTTCAGAGCTGCTGTGA TGTGAAGGATCTGGCCTCTTGGTGCTTCAGAGCTGCTGTGA Direct Gain 0 0.91407602802879 NA NA prediction 0.828152056057581 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73451115 chr2:73451115 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_42668 0 0 1 0 2 SMYD5 chr2:73451075 3'AG 73451075 Downstream 41bp 39207 chr2 73451115 73451115 1 + T G PAAD 73451115 + 73451095 73451135 41 TGTGAAGGATCTGGCCTCTTTGTGCTTCAGAGCTGCTGTGA TGTGAAGGATCTGGCCTCTTGGTGCTTCAGAGCTGCTGTGA Direct Gain 0 0.91407602802879 NA NA prediction 0.828152056057581 Functional Gain - SMYD5 ENSG00000135632 CDS Human protein_coding chr2:73451115 chr2:73451115 nonsynonymous SNV 0.993 2 21 hm7G_associated_SNPs_42668 0 0 1 0 2 SMYD5 chr2:73451131 5'GT 73451131 Upstream 17bp 39208 chr5 130535268 130535268 1 + T G LUAD 130535268 + 130535248 130535288 41 TTGTAGAAAATGTGCCATATTGTGATGCACCAACTCAGAAG TTGTAGAAAATGTGCCATATGGTGATGCACCAACTCAGAAG Direct Gain 0 0.914063696348983 NA NA prediction 0.828127392697966 Functional Gain - LYRM7 ENSG00000186687 CDS Human protein_coding chr5:130535268 chr5:130535268 nonsynonymous SNV 0.997 1 21 hm7G_associated_SNPs_42669 0 0 1 0 1 LYRM7 chr5:130535224 3'AG 130535224 Downstream 45bp 39209 chr19 30102810 30102810 1 + A G UCEC 30102810 + 30102790 30102830 41 CCATGAACTCTGGAAACAGTACATCAGGGACCTGTGCAGTG CCATGAACTCTGGAAACAGTGCATCAGGGACCTGTGCAGTG Direct Gain 0 0.914049787406522 NA NA prediction 0.828099574813044 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30102810 chr19:30102810 nonsynonymous SNV 0.886 3 21 hm7G_associated_SNPs_42671 0 0 1 0 2 POP4 chr19:30102769 3'AG 30102769 Downstream 42bp 39210 chr19 30102810 30102810 1 + A G UCEC 30102810 + 30102790 30102830 41 CCATGAACTCTGGAAACAGTACATCAGGGACCTGTGCAGTG CCATGAACTCTGGAAACAGTGCATCAGGGACCTGTGCAGTG Direct Gain 0 0.914049787406522 NA NA prediction 0.828099574813044 Functional Gain - POP4 ENSG00000105171 CDS Human protein_coding chr19:30102810 chr19:30102810 nonsynonymous SNV 0.886 3 21 hm7G_associated_SNPs_42671 0 0 1 0 2 POP4 chr19:30102846 5'GT 30102846 Upstream 37bp 39211 chr2 113831950 113831950 1 + A G CHOL 113831950 + 113831930 113831970 41 TCTATACACAAGAGATGGCCAGCTGCTGGTGGGAGATCCTG TCTATACACAAGAGATGGCCGGCTGCTGGTGGGAGATCCTG Direct Gain 0 0.9140389250406 NA NA prediction 0.8280778500812 Functional Gain - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113831950 chr2:113831950 nonsynonymous SNV 0.894 1 21 hm7G_associated_SNPs_42673 0 0 0 0 2 IL1F10 chr2:113831906 3'AG 113831906 Downstream 45bp 39212 chr2 113831950 113831950 1 + A G CHOL 113831950 + 113831930 113831970 41 TCTATACACAAGAGATGGCCAGCTGCTGGTGGGAGATCCTG TCTATACACAAGAGATGGCCGGCTGCTGGTGGGAGATCCTG Direct Gain 0 0.9140389250406 NA NA prediction 0.8280778500812 Functional Gain - IL1F10 ENSG00000136697 CDS Human protein_coding chr2:113831950 chr2:113831950 nonsynonymous SNV 0.894 1 21 hm7G_associated_SNPs_42673 0 0 0 0 2 IL1F10 chr2:113831991 5'GT 113831991 Upstream 42bp 39213 chr4 119461453 119461453 1 + A G UCEC 119461453 + 119461433 119461473 41 TTCCAAAACACCAGAAGGAAACAACGGTCGATCTGGTGATC TTCCAAAACACCAGAAGGAAGCAACGGTCGATCTGGTGATC Direct Gain 0 0.914014898083125 NA NA prediction 0.82802979616625 Functional Gain - CEP170P1 ENSG00000154608 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119461453 chr4:119461453 . . 0 21 hm7G_associated_SNPs_42676 0 0 0 0 2 CEP170P1 chr4:119461374 3'AG 119461374 Downstream 80bp 39214 chr4 119461453 119461453 1 + A G UCEC 119461453 + 119461433 119461473 41 TTCCAAAACACCAGAAGGAAACAACGGTCGATCTGGTGATC TTCCAAAACACCAGAAGGAAGCAACGGTCGATCTGGTGATC Direct Gain 0 0.914014898083125 NA NA prediction 0.82802979616625 Functional Gain - CEP170P1 ENSG00000154608 ncRNA_exonic Human transcribed_unprocessed_pseudogene chr4:119461453 chr4:119461453 . . 0 21 hm7G_associated_SNPs_42676 0 0 0 0 2 CEP170P1 chr4:119461544 5'GT 119461544 Upstream 92bp 39215 chr17 72199860 72199860 1 + C G rs76423818 72199860 + 72199840 72199880 41 GCTGCTTGCTGTGAGTGTCTCTAGGGTGATACGTGGGTGAG GCTGCTTGCTGTGAGTGTCTGTAGGGTGATACGTGGGTGAG Direct Gain 0 0.914013689496331 NA NA prediction 0.828027378992662 Functional Gain - RPL38 ENSG00000172809 UTR5 Human protein_coding chr17:72199860 chr17:72199860 . . 0 21 hm7G_associated_SNPs_42677 0 0 1 0 1 RPL38 chr17:72199884 5'GT 72199884 Upstream 25bp 39216 chr10 7791218 7791218 1 + A G rs73628457 7791218 + 7791198 7791238 41 TACCTGCTGGTTTGTGCACAACAGTGGAAAAGGATTCATTG TACCTGCTGGTTTGTGCACAGCAGTGGAAAAGGATTCATTG Direct Gain 0 0.914012905782604 NA NA prediction 0.828025811565208 Functional Gain - ITIH2 ENSG00000151655 CDS Human protein_coding chr10:7791218 chr10:7791218 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42678 0 0 1 0 1 ITIH2 chr10:7791150 3'AG 7791150 Downstream 69bp 39217 chr12 51213428 51213428 1 + C G OV 51213428 + 51213408 51213448 41 TCATATTTAGAGAAGCTGCTCGAGAATGTCGCAGAAAGAAG TCATATTTAGAGAAGCTGCTGGAGAATGTCGCAGAAAGAAG Direct Gain 0 0.914010250278286 NA NA prediction 0.828020500556573 Functional Gain - ATF1 ENSG00000123268 CDS Human protein_coding chr12:51213428 chr12:51213428 nonsynonymous SNV 1.000 4 21 hm7G_associated_SNPs_42679 0 0 1 0 1 ATF1 chr12:51213418 3'AG 51213418 Downstream 11bp 39218 chr9 74810440 74810440 1 + C G CESC 74810440 + 74810420 74810460 41 TGTTTTTAGAAGAAGCATCTCAACAGGAAAAACTGGCCAAA TGTTTTTAGAAGAAGCATCTGAACAGGAAAAACTGGCCAAA Direct Gain 0 0.913974936883139 NA NA prediction 0.827949873766277 Functional Gain - GDA ENSG00000119125 CDS Human protein_coding chr9:74810440 chr9:74810440 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42682 0 0 1 0 3 GDA chr9:74810416 3'AG 74810416 Downstream 25bp 39219 chr9 74810440 74810440 1 + C G CESC 74810440 + 74810420 74810460 41 TGTTTTTAGAAGAAGCATCTCAACAGGAAAAACTGGCCAAA TGTTTTTAGAAGAAGCATCTGAACAGGAAAAACTGGCCAAA Direct Gain 0 0.913974936883139 NA NA prediction 0.827949873766277 Functional Gain - GDA ENSG00000119125 CDS Human protein_coding chr9:74810440 chr9:74810440 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42682 0 0 1 0 3 GDA chr9:74810420 3'AG 74810420 Downstream 21bp 39220 chr9 74810440 74810440 1 + C G CESC 74810440 + 74810420 74810460 41 TGTTTTTAGAAGAAGCATCTCAACAGGAAAAACTGGCCAAA TGTTTTTAGAAGAAGCATCTGAACAGGAAAAACTGGCCAAA Direct Gain 0 0.913974936883139 NA NA prediction 0.827949873766277 Functional Gain - GDA ENSG00000119125 CDS Human protein_coding chr9:74810440 chr9:74810440 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42682 0 0 1 0 3 GDA chr9:74810504 5'GT 74810504 Upstream 65bp 39221 chr5 94024337 94024337 1 + A G ESCA 94024337 + 94024317 94024357 41 CCTTACTAATGCTGAATGGTACTAAACAAAAACAAGTCGAA CCTTACTAATGCTGAATGGTGCTAAACAAAAACAAGTCGAA Direct Gain 0 0.913930989009884 NA NA prediction 0.827861978019768 Functional Gain - SLF1 ENSG00000133302 CDS Human protein_coding chr5:94024337 chr5:94024337 nonsynonymous SNV 0.992 0 21 hm7G_associated_SNPs_42684 0 0 1 0 1 SLF1 chr5:94024374 5'GT 94024374 Upstream 38bp 39222 chr13 26975607 26975607 1 + A G COAD 26975607 + 26975587 26975627 41 TGTTTAACCAATTGAGAAGAACCAGCAGCAGCAGCAGGGCA TGTTTAACCAATTGAGAAGAGCCAGCAGCAGCAGCAGGGCA Direct Gain 0 0.913922793562384 NA NA prediction 0.827845587124768 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26975607 chr13:26975607 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42685 0 0 0 0 2 CDK8 chr13:26975603 3'AG 26975603 Downstream 5bp 39223 chr13 26975607 26975607 1 + A G COAD 26975607 + 26975587 26975627 41 TGTTTAACCAATTGAGAAGAACCAGCAGCAGCAGCAGGGCA TGTTTAACCAATTGAGAAGAGCCAGCAGCAGCAGCAGGGCA Direct Gain 0 0.913922793562384 NA NA prediction 0.827845587124768 Functional Gain - CDK8 ENSG00000132964 CDS Human protein_coding chr13:26975607 chr13:26975607 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42685 0 0 0 0 2 CDK8 chr13:26975606 3'AG 26975606 Downstream 2bp 39224 chr5 176070106 176070106 1 + C G rs114992074 176070106 + 176070086 176070126 41 AGTGAAGCTGAGGGTGGAATCCGAGAGTGGGAGGAGGAGGA AGTGAAGCTGAGGGTGGAATGCGAGAGTGGGAGGAGGAGGA Direct Gain 0 0.913889174294154 NA NA prediction 0.827778348588309 Functional Gain - EIF4E1B ENSG00000175766 CDS Human protein_coding chr5:176070106 chr5:176070106 nonsynonymous SNV 0.027 1 21 hm7G_associated_SNPs_42687 0 0 0 0 1 EIF4E1B chr5:176070083 3'AG 176070083 Downstream 24bp 39225 chr14 68200507 68200507 1 + A G UCEC 68200507 + 68200487 68200527 41 TCCAAGGGCCCGAAATAACAAAACAGCTGAGCGCCTATGGA TCCAAGGGCCCGAAATAACAGAACAGCTGAGCGCCTATGGA Direct Gain 0 0.913886687914151 NA NA prediction 0.827773375828302 Functional Gain - RDH12 ENSG00000139988 CDS Human protein_coding chr14:68200507 chr14:68200507 nonsynonymous SNV 0.992 0 21 hm7G_associated_SNPs_42688 0 0 0 0 1 RDH12 chr14:68200463 3'AG 68200463 Downstream 45bp 39226 chrX 103295736 103295736 1 + A G rs782591108 103295736 + 103295716 103295756 41 ATGCCCTAGTGTACAGTGGTACAGCCAATGAGTGACCTGCA ATGCCCTAGTGTACAGTGGTGCAGCCAATGAGTGACCTGCA Direct Gain 0 0.913885546049455 NA NA prediction 0.827771092098909 Functional Gain - H2BFM ENSG00000101812 UTR3 Human protein_coding chrX:103295736 chrX:103295736 . . 0 21 hm7G_associated_SNPs_42689 0 0 0 0 1 H2BFM chrX:103295655 3'AG 103295655 Downstream 82bp 39227 chr18 29622210 29622210 1 + A G rs144268137 29622210 + 29622190 29622230 41 ATAGATAAGTATGGACCACTACAAGAACTTGAGGAGACAGC ATAGATAAGTATGGACCACTGCAAGAACTTGAGGAGACAGC Direct Gain 0 0.913883641872555 NA NA prediction 0.82776728374511 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29622210 chr18:29622210 synonymous SNV . 0 21 hm7G_associated_SNPs_42690 0 0 1 0 2 RNF125 chr18:29622142 3'AG 29622142 Downstream 69bp 39228 chr18 29622210 29622210 1 + A G rs144268137 29622210 + 29622190 29622230 41 ATAGATAAGTATGGACCACTACAAGAACTTGAGGAGACAGC ATAGATAAGTATGGACCACTGCAAGAACTTGAGGAGACAGC Direct Gain 0 0.913883641872555 NA NA prediction 0.82776728374511 Functional Gain - RNF125 ENSG00000101695 CDS Human protein_coding chr18:29622210 chr18:29622210 synonymous SNV . 0 21 hm7G_associated_SNPs_42690 0 0 1 0 2 RNF125 chr18:29622236 5'GT 29622236 Upstream 27bp 39229 chr5 78411646 78411646 1 + C G BLCA 78411646 + 78411626 78411666 41 ATTGGAGATGGAGGGTTTGTCTTTGCACTGGAGAAGAGGGG ATTGGAGATGGAGGGTTTGTGTTTGCACTGGAGAAGAGGGG Direct Gain 0 0.913867834674485 NA NA prediction 0.82773566934897 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78411646 chr5:78411646 synonymous SNV . 0 21 hm7G_associated_SNPs_42692 0 0 0 0 2 BHMT chr5:78411590 3'AG 78411590 Downstream 57bp 39230 chr5 78411646 78411646 1 + C G BLCA 78411646 + 78411626 78411666 41 ATTGGAGATGGAGGGTTTGTCTTTGCACTGGAGAAGAGGGG ATTGGAGATGGAGGGTTTGTGTTTGCACTGGAGAAGAGGGG Direct Gain 0 0.913867834674485 NA NA prediction 0.82773566934897 Functional Gain - BHMT ENSG00000145692 CDS Human protein_coding chr5:78411646 chr5:78411646 synonymous SNV . 0 21 hm7G_associated_SNPs_42692 0 0 0 0 2 BHMT chr5:78411722 5'GT 78411722 Upstream 77bp 39231 chr4 57314715 57314715 1 + A G LUAD 57314715 + 57314695 57314735 41 ACACAGGCTATATTTGAAATACTGGAGAAATCCTGGTTGCC ACACAGGCTATATTTGAAATGCTGGAGAAATCCTGGTTGCC Direct Gain 0 0.913852756512225 NA NA prediction 0.82770551302445 Functional Gain - PAICS ENSG00000128050 CDS Human protein_coding chr4:57314715 chr4:57314715 nonsynonymous SNV 0.995 4 21 hm7G_associated_SNPs_42693 0 0 1 0 1 PAICS chr4:57314763 5'GT 57314763 Upstream 49bp 39232 chr4 124322764 124322764 1 + A G rs115001600 124322764 + 124322744 124322784 41 CACATGGATCCCCAAAATCAACATGGCAGTGGCAGTTCGTT CACATGGATCCCCAAAATCAGCATGGCAGTGGCAGTTCGTT Direct Gain 0 0.913827080755083 NA NA prediction 0.827654161510166 Functional Gain - SPRY1 ENSG00000164056 CDS Human protein_coding chr4:124322764 chr4:124322764 synonymous SNV . 0 21 hm7G_associated_SNPs_42697 0 0 0 0 1 SPRY1 chr4:124322692 3'AG 124322692 Downstream 73bp 39233 chr3 197495447 197495447 1 + C G LUAD 197495447 + 197495427 197495467 41 GTCCTATGAATCGTCCACCTCTAAGTGACAAGGTAGGATGA GTCCTATGAATCGTCCACCTGTAAGTGACAAGGTAGGATGA Direct Gain 0 0.913812103866347 NA NA prediction 0.827624207732695 Functional Gain - FYTTD1 ENSG00000122068 CDS Human protein_coding chr3:197495447 chr3:197495447 nonsynonymous SNV 0.997 3 21 hm7G_associated_SNPs_42699 0 0 1 0 1 FYTTD1 chr3:197495458 5'GT 197495458 Upstream 12bp 39234 chrX 23700631 23700631 1 + A G BLCA 23700631 + 23700611 23700651 41 AAGCATTCCAGTACACTGACAAACACGGAGAAGGTACCTCT AAGCATTCCAGTACACTGACGAACACGGAGAAGGTACCTCT Direct Gain 0 0.913809128528784 NA NA prediction 0.827618257057569 Functional Gain - PRDX4 ENSG00000123131 CDS Human protein_coding chrX:23700631 chrX:23700631 nonsynonymous SNV 0.994 1 21 hm7G_associated_SNPs_42700 0 0 1 0 1 PRDX4 chrX:23700643 5'GT 23700643 Upstream 13bp 39235 chr5 41934241 41934241 1 + A G LIHC 41934241 + 41934221 41934261 41 AATTTTTTTTCTAGAAAGGAAAGAGATAGAGCAAGGGAAGA AATTTTTTTTCTAGAAAGGAGAGAGATAGAGCAAGGGAAGA Direct Gain 0 0.913808460125136 NA NA prediction 0.827616920250272 Functional Gain - FBXO4 ENSG00000151876 CDS Human protein_coding chr5:41934241 chr5:41934241 synonymous SNV . 0 21 hm7G_associated_SNPs_42701 0 0 0 0 1 FBXO4 chr5:41934235 3'AG 41934235 Downstream 7bp 39236 chr17 59557513 59557513 1 + C G BLCA 59557513 + 59557493 59557533 41 GCTCATCTCCCCCCAGCTCTCAGCCACACCGGACGTGGGCC GCTCATCTCCCCCCAGCTCTGAGCCACACCGGACGTGGGCC Direct Gain 0 0.913806362761894 NA NA prediction 0.827612725523789 Functional Gain - TBX4 ENSG00000121075 CDS Human protein_coding chr17:59557513 chr17:59557513 stopgain 0.298 0 21 hm7G_associated_SNPs_42702 0 0 0 0 1 TBX4 chr17:59557451 3'AG 59557451 Downstream 63bp 39237 chr15 41672294 41672294 1 + A G LIHC 41672294 + 41672274 41672314 41 TGACCTATCCCTCTCAGGGAAGAGCAACGGAAGAAACGCGA TGACCTATCCCTCTCAGGGAGGAGCAACGGAAGAAACGCGA Direct Gain 0 0.913788446123331 NA NA prediction 0.827576892246662 Functional Gain - NUSAP1 ENSG00000137804 CDS Human protein_coding chr15:41672294 chr15:41672294 synonymous SNV . 0 21 hm7G_associated_SNPs_42703 0 0 1 0 1 NUSAP1 chr15:41672291 3'AG 41672291 Downstream 4bp 39238 chr17 2224657 2224657 1 + C G UCEC 2224657 + 2224637 2224677 41 CAGAAGGCATCATGGTACATCCCAACCAGGAGCCTGCAGTG CAGAAGGCATCATGGTACATGCCAACCAGGAGCCTGCAGTG Direct Gain 0 0.913775051436603 NA NA prediction 0.827550102873206 Functional Gain - SRR ENSG00000167720 CDS Human protein_coding chr17:2224657 chr17:2224657 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_42705 0 0 0 0 2 SRR chr17:2224600 3'AG 2224600 Downstream 58bp 39239 chr17 2224657 2224657 1 + C G UCEC 2224657 + 2224637 2224677 41 CAGAAGGCATCATGGTACATCCCAACCAGGAGCCTGCAGTG CAGAAGGCATCATGGTACATGCCAACCAGGAGCCTGCAGTG Direct Gain 0 0.913775051436603 NA NA prediction 0.827550102873206 Functional Gain - SRR ENSG00000167720 CDS Human protein_coding chr17:2224657 chr17:2224657 nonsynonymous SNV 0.998 2 21 hm7G_associated_SNPs_42705 0 0 0 0 2 SRR chr17:2224719 5'GT 2224719 Upstream 63bp 39240 chr3 184020602 184020602 1 + A G UCEC 184020602 + 184020582 184020622 41 AACAGCAACTTCTTGGCCTTAGCTCGGGAGGTGAGACTGCC AACAGCAACTTCTTGGCCTTGGCTCGGGAGGTGAGACTGCC Direct Gain 0 0.913773345269531 NA NA prediction 0.827546690539062 Functional Gain - PSMD2 ENSG00000175166 CDS Human protein_coding chr3:184020602 chr3:184020602 synonymous SNV . 0 21 hm7G_associated_SNPs_42706 0 0 1 0 1 PSMD2 chr3:184020611 5'GT 184020611 Upstream 10bp 39241 chr4 100461595 100461595 1 + A G UCEC 100461595 + 100461575 100461615 41 AAGTCAAGGATCTGAAGAAAACAAGGAAGTACCAAAAGGTT AAGTCAAGGATCTGAAGAAAGCAAGGAAGTACCAAAAGGTT Direct Gain 0 0.913763827790078 NA NA prediction 0.827527655580156 Functional Gain - C4orf17 ENSG00000138813 CDS Human protein_coding chr4:100461595 chr4:100461595 nonsynonymous SNV 0.727 0 21 hm7G_associated_SNPs_42707 0 0 0 0 1 C4orf17 chr4:100461612 5'GT 100461612 Upstream 18bp 39242 chr5 158701630 158701630 1 + A G LUSC 158701630 + 158701610 158701650 41 TGGATTGAAGCTAAAATGAAAGTAAGTGTTAGAAAGCAATC TGGATTGAAGCTAAAATGAAGGTAAGTGTTAGAAAGCAATC Direct Gain 0 0.9137526672493 NA NA prediction 0.8275053344986 Functional Gain - UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158701630 chr5:158701630 synonymous SNV . 0 21 hm7G_associated_SNPs_42708 0 0 0 0 2 UBLCP1 chr5:158701593 3'AG 158701593 Downstream 38bp 39243 chr5 158701630 158701630 1 + A G LUSC 158701630 + 158701610 158701650 41 TGGATTGAAGCTAAAATGAAAGTAAGTGTTAGAAAGCAATC TGGATTGAAGCTAAAATGAAGGTAAGTGTTAGAAAGCAATC Direct Gain 0 0.9137526672493 NA NA prediction 0.8275053344986 Functional Gain - UBLCP1 ENSG00000164332 CDS Human protein_coding chr5:158701630 chr5:158701630 synonymous SNV . 0 21 hm7G_associated_SNPs_42708 0 0 0 0 2 UBLCP1 chr5:158701630 5'GT 158701630 Upstream 1bp 39244 chr1 150471045 150471045 1 + C G COAD 150471045 + 150471025 150471065 41 GACTAGCTGACTTTGGGGCTCTACACCGGGCCGAAGCCTCT GACTAGCTGACTTTGGGGCTGTACACCGGGCCGAAGCCTCT Direct Gain 0 0.913677796393064 NA NA prediction 0.827355592786129 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471045 chr1:150471045 nonsynonymous SNV 0.824 4 21 hm7G_associated_SNPs_42715 0 0 1 0 2 TARS2 chr1:150470978 3'AG 150470978 Downstream 68bp 39245 chr1 150471045 150471045 1 + C G COAD 150471045 + 150471025 150471065 41 GACTAGCTGACTTTGGGGCTCTACACCGGGCCGAAGCCTCT GACTAGCTGACTTTGGGGCTGTACACCGGGCCGAAGCCTCT Direct Gain 0 0.913677796393064 NA NA prediction 0.827355592786129 Functional Gain - TARS2 ENSG00000143374 CDS Human protein_coding chr1:150471045 chr1:150471045 nonsynonymous SNV 0.824 4 21 hm7G_associated_SNPs_42715 0 0 1 0 2 TARS2 chr1:150471140 5'GT 150471140 Upstream 96bp 39246 chr10 118310677 118310677 1 + A G UCEC 118310677 + 118310657 118310697 41 AGGTGGCTCCCGAACTGGATACACACAAGCCTCGCAGAACA AGGTGGCTCCCGAACTGGATGCACACAAGCCTCGCAGAACA Direct Gain 0 0.913671576017149 NA NA prediction 0.827343152034299 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118310677 chr10:118310677 nonsynonymous SNV 0.916 5 21 hm7G_associated_SNPs_42717 0 0 0 0 2 PNLIP chr10:118310610 3'AG 118310610 Downstream 68bp 39247 chr10 118310677 118310677 1 + A G UCEC 118310677 + 118310657 118310697 41 AGGTGGCTCCCGAACTGGATACACACAAGCCTCGCAGAACA AGGTGGCTCCCGAACTGGATGCACACAAGCCTCGCAGAACA Direct Gain 0 0.913671576017149 NA NA prediction 0.827343152034299 Functional Gain - PNLIP ENSG00000175535 CDS Human protein_coding chr10:118310677 chr10:118310677 nonsynonymous SNV 0.916 5 21 hm7G_associated_SNPs_42717 0 0 0 0 2 PNLIP chr10:118310744 5'GT 118310744 Upstream 68bp 39248 chr19 34957830 34957830 1 + C G rs45482396 34957830 + 34957810 34957850 41 TGAAGTTGTTGGTGATGCCCCGGAAAAAGTGGGGCCCAAAC TGAAGTTGTTGGTGATGCCCGGGAAAAAGTGGGGCCCAAAC Direct Gain 0 0.913670381554354 NA NA prediction 0.827340763108708 Functional Gain - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34957830 chr19:34957830 nonsynonymous SNV 0.479 1 21 hm7G_associated_SNPs_42718 0 0 1 0 2 UBA2 chr19:34957783 3'AG 34957783 Downstream 48bp 39249 chr19 34957830 34957830 1 + C G rs45482396 34957830 + 34957810 34957850 41 TGAAGTTGTTGGTGATGCCCCGGAAAAAGTGGGGCCCAAAC TGAAGTTGTTGGTGATGCCCGGGAAAAAGTGGGGCCCAAAC Direct Gain 0 0.913670381554354 NA NA prediction 0.827340763108708 Functional Gain - UBA2 ENSG00000126261 CDS Human protein_coding chr19:34957830 chr19:34957830 nonsynonymous SNV 0.479 1 21 hm7G_associated_SNPs_42718 0 0 1 0 2 UBA2 chr19:34957919 5'GT 34957919 Upstream 90bp 39250 chr9 37761953 37761953 1 + A G GBM 37761953 + 37761933 37761973 41 ACTGGAAATTGGAAGGGAGTACTCAGAAAGTAGAGTCACCT ACTGGAAATTGGAAGGGAGTGCTCAGAAAGTAGAGTCACCT Direct Gain 0 0.913655533666358 NA NA prediction 0.827311067332716 Functional Gain - TRMT10B ENSG00000165275 CDS Human protein_coding chr9:37761953 chr9:37761953 nonsynonymous SNV 0.184 0 21 hm7G_associated_SNPs_42720 0 0 0 0 1 TRMT10B chr9:37761900 3'AG 37761900 Downstream 54bp 39251 chr9 34493276 34493276 1 + A G BLCA 34493276 + 34493256 34493296 41 AGGCAAAGACCCCAGTGGCTAAAAAATCAGGGAAGATGGCC AGGCAAAGACCCCAGTGGCTGAAAAATCAGGGAAGATGGCC Direct Gain 0 0.913618146228537 NA NA prediction 0.827236292457073 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34493276 chr9:34493276 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_42726 0 0 0 0 2 DNAI1 chr9:34493192 3'AG 34493192 Downstream 85bp 39252 chr9 34493276 34493276 1 + A G BLCA 34493276 + 34493256 34493296 41 AGGCAAAGACCCCAGTGGCTAAAAAATCAGGGAAGATGGCC AGGCAAAGACCCCAGTGGCTGAAAAATCAGGGAAGATGGCC Direct Gain 0 0.913618146228537 NA NA prediction 0.827236292457073 Functional Gain - DNAI1 ENSG00000122735 CDS Human protein_coding chr9:34493276 chr9:34493276 nonsynonymous SNV 0.986 0 21 hm7G_associated_SNPs_42726 0 0 0 0 2 DNAI1 chr9:34493326 5'GT 34493326 Upstream 51bp 39253 chr4 90872782 90872782 1 + C G LUAD 90872782 + 90872762 90872802 41 ATTCAAGCTGTAGTCGGCATCCGTGCCAAAATGGGGGCACG ATTCAAGCTGTAGTCGGCATGCGTGCCAAAATGGGGGCACG Direct Gain 0 0.913597717429967 NA NA prediction 0.827195434859934 Functional Gain - MMRN1 ENSG00000138722 CDS Human protein_coding chr4:90872782 chr4:90872782 nonsynonymous SNV 0.041 5 21 hm7G_associated_SNPs_42727 0 0 0 0 1 MMRN1 chr4:90872756 3'AG 90872756 Downstream 27bp 39254 chr17 71201784 71201784 1 + C G COAD 71201784 + 71201764 71201804 41 GTTCTGACAGCCAAGGGTGACGAGGTGAAGAGTGGCCGGAG GTTCTGACAGCCAAGGGTGAGGAGGTGAAGAGTGGCCGGAG Direct Gain 0 0.913583490498464 NA NA prediction 0.827166980996927 Functional Gain - COG1 ENSG00000166685 CDS Human protein_coding chr17:71201784 chr17:71201784 nonsynonymous SNV 0.264 0 21 hm7G_associated_SNPs_42728 0 0 1 0 2 COG1 chr17:71201692 3'AG 71201692 Downstream 93bp 39255 chr17 71201784 71201784 1 + C G COAD 71201784 + 71201764 71201804 41 GTTCTGACAGCCAAGGGTGACGAGGTGAAGAGTGGCCGGAG GTTCTGACAGCCAAGGGTGAGGAGGTGAAGAGTGGCCGGAG Direct Gain 0 0.913583490498464 NA NA prediction 0.827166980996927 Functional Gain - COG1 ENSG00000166685 CDS Human protein_coding chr17:71201784 chr17:71201784 nonsynonymous SNV 0.264 0 21 hm7G_associated_SNPs_42728 0 0 1 0 2 COG1 chr17:71201819 5'GT 71201819 Upstream 36bp 39256 chr10 45920457 45920457 1 + C G THCA 45920457 + 45920437 45920477 41 CTGATGTTTGGCTACCAGTTCCTGAATGGCTGCAACCCTGT CTGATGTTTGGCTACCAGTTGCTGAATGGCTGCAACCCTGT Direct Gain 0 0.913577619694533 NA NA prediction 0.827155239389066 Functional Gain - ALOX5 ENSG00000012779 CDS Human protein_coding chr10:45920457 chr10:45920457 nonsynonymous SNV 0.999 3 21 hm7G_associated_SNPs_42729 0 0 1 0 1 ALOX5 chr10:45920408 3'AG 45920408 Downstream 50bp 39257 chr20 60701436 60701436 1 + A G KIRC 60701436 + 60701416 60701456 41 TTTCCGAGGGATGGCGCCCTACGGCCCGCTGGCGGCCAGCT TTTCCGAGGGATGGCGCCCTGCGGCCCGCTGGCGGCCAGCT Direct Gain 0 0.913569477610703 NA NA prediction 0.827138955221406 Functional Gain - LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701436 chr20:60701436 nonsynonymous SNV 0.880 4 21 hm7G_associated_SNPs_42731 0 0 1 0 2 LSM14B chr20:60701360 3'AG 60701360 Downstream 77bp 39258 chr20 60701436 60701436 1 + A G KIRC 60701436 + 60701416 60701456 41 TTTCCGAGGGATGGCGCCCTACGGCCCGCTGGCGGCCAGCT TTTCCGAGGGATGGCGCCCTGCGGCCCGCTGGCGGCCAGCT Direct Gain 0 0.913569477610703 NA NA prediction 0.827138955221406 Functional Gain - LSM14B ENSG00000149657 CDS Human protein_coding chr20:60701436 chr20:60701436 nonsynonymous SNV 0.880 4 21 hm7G_associated_SNPs_42731 0 0 1 0 2 LSM14B chr20:60701495 5'GT 60701495 Upstream 60bp 39259 chr3 111718352 111718352 1 + A G COAD 111718352 + 111718332 111718372 41 GTATGATGCGGACCTGGAGAACAAGCTGGTGGACTGGATCA GTATGATGCGGACCTGGAGAGCAAGCTGGTGGACTGGATCA Direct Gain 0 0.913532089690449 NA NA prediction 0.827064179380897 Functional Gain - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111718352 chr3:111718352 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42734 0 0 1 0 2 TAGLN3 chr3:111718268 3'AG 111718268 Downstream 85bp 39260 chr3 111718352 111718352 1 + A G COAD 111718352 + 111718332 111718372 41 GTATGATGCGGACCTGGAGAACAAGCTGGTGGACTGGATCA GTATGATGCGGACCTGGAGAGCAAGCTGGTGGACTGGATCA Direct Gain 0 0.913532089690449 NA NA prediction 0.827064179380897 Functional Gain - TAGLN3 ENSG00000144834 CDS Human protein_coding chr3:111718352 chr3:111718352 nonsynonymous SNV 1.000 0 21 hm7G_associated_SNPs_42734 0 0 1 0 2 TAGLN3 chr3:111718449 5'GT 111718449 Upstream 98bp 39261 chr17 73258685 73258685 1 + A G COAD 73258685 + 73258665 73258705 41 GCTAACTGAGGAGGAGAAATATGTTCGGGAGCTCAAGAAGA GCTAACTGAGGAGGAGAAATGTGTTCGGGAGCTCAAGAAGA Direct Gain 0 0.913520883090557 NA NA prediction 0.827041766181115 Functional Gain - MRPS7 ENSG00000125445 CDS Human protein_coding chr17:73258685 chr17:73258685 nonsynonymous SNV 0.938 1 21 hm7G_associated_SNPs_42736 0 0 1 0 1 MRPS7 chr17:73258769 5'GT 73258769 Upstream 85bp 39262 chr5 161580153 161580153 1 + A G BLCA 161580153 + 161580133 161580173 41 CCATTCAAATGAATAATGCTACACACCTTCAAGAGAGAGAT CCATTCAAATGAATAATGCTGCACACCTTCAAGAGAGAGAT Direct Gain 0 0.913516608881486 NA NA prediction 0.827033217762972 Functional Gain - GABRG2 ENSG00000113327 CDS Human protein_coding chr5:161580153 chr5:161580153 nonsynonymous SNV 0.974 2 21 hm7G_associated_SNPs_42737 0 0 0 0 1 GABRG2 chr5:161580099 3'AG 161580099 Downstream 55bp 39263 chr5 914627 914627 1 + A G UCEC 914627 + 914607 914647 41 CTGCTGACCCTCCGAGAGCTAGAGATGATTGGCTTCATTGA CTGCTGACCCTCCGAGAGCTGGAGATGATTGGCTTCATTGA Direct Gain 0 0.913516606582737 NA NA prediction 0.827033213165475 Functional Gain - TRIP13 ENSG00000071539 CDS Human protein_coding chr5:914627 chr5:914627 synonymous SNV . 0 21 hm7G_associated_SNPs_42738 0 0 1 0 1 TRIP13 chr5:914692 5'GT 914692 Upstream 66bp 39264 chr18 63489378 63489378 1 + C G rs8097752 63489378 + 63489358 63489398 41 AAAGACCAGTATTTGCTTGTCATTCAGGCAAAGGATATGGT AAAGACCAGTATTTGCTTGTGATTCAGGCAAAGGATATGGT Direct Gain 0 0.913512003630182 NA NA prediction 0.827024007260364 Functional Gain - CDH7 ENSG00000081138 CDS Human protein_coding chr18:63489378 chr18:63489378 synonymous SNV . 0 21 hm7G_associated_SNPs_42739 0 0 1 0 1 CDH7 chr18:63489317 3'AG 63489317 Downstream 62bp 39265 chr15 79186433 79186433 1 + A G LUAD 79186433 + 79186413 79186453 41 AATGAAGTTGTGGCAGGGATAAAAGAATACTTCAACGTAAT AATGAAGTTGTGGCAGGGATGAAAGAATACTTCAACGTAAT Direct Gain 0 0.913509854501234 NA NA prediction 0.827019709002468 Functional Gain - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79186433 chr15:79186433 nonsynonymous SNV 0.996 4 21 hm7G_associated_SNPs_42740 0 0 0 0 1 MORF4L1 chr15:79186400 3'AG 79186400 Downstream 34bp 39266 chr10 15145329 15145329 1 + C G BLCA 15145329 + 15145309 15145349 41 TCAAAATGGCTGCAGCTCCTCAAGCACCGGGGCGGGGATCT TCAAAATGGCTGCAGCTCCTGAAGCACCGGGGCGGGGATCT Direct Gain 0 0.913468673704817 NA NA prediction 0.826937347409634 Functional Gain - RPP38 ENSG00000152464 CDS Human protein_coding chr10:15145329 chr10:15145329 nonsynonymous SNV 0.825 0 21 hm7G_associated_SNPs_42742 0 0 1 0 1 RPP38 chr10:15145304 3'AG 15145304 Downstream 26bp 39267 chr14 92627534 92627534 1 + C G LUAD 92627534 + 92627514 92627554 41 TTCTCTTACGGGAGGGGATTCAAGCTGAATTTGTAGGAGGT TTCTCTTACGGGAGGGGATTGAAGCTGAATTTGTAGGAGGT Direct Gain 0 0.913416786202627 NA NA prediction 0.826833572405254 Functional Gain - CPSF2 ENSG00000165934 CDS Human protein_coding chr14:92627534 chr14:92627534 nonsynonymous SNV 1.000 1 21 hm7G_associated_SNPs_42746 0 0 1 0 1 CPSF2 chr14:92627456 3'AG 92627456 Downstream 79bp 39268 chr5 145609363 145609363 1 + A G HNSC 145609363 + 145609343 145609383 41 TGAATTGTACCGTGAGAAGTATGACTGGAGAAGAGGCAGGA TGAATTGTACCGTGAGAAGTGTGACTGGAGAAGAGGCAGGA Direct Gain 0 0.913399310163072 NA NA prediction 0.826798620326144 Functional Gain - RBM27 ENSG00000091009 CDS Human protein_coding chr5:145609363 chr5:145609363 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42747 0 0 1 0 1 RBM27 chr5:145609280 3'AG 145609280 Downstream 84bp 39269 chr6 123127407 123127407 1 + C G BLCA 123127407 + 123127387 123127427 41 TAAATTCTTTGTTTGTGGCTCCTGCTGTTACACCAGTGAAG TAAATTCTTTGTTTGTGGCTGCTGCTGTTACACCAGTGAAG Direct Gain 0 0.913368939818851 NA NA prediction 0.826737879637703 Functional Gain - SMPDL3A ENSG00000172594 CDS Human protein_coding chr6:123127407 chr6:123127407 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42750 0 0 0 0 2 SMPDL3A chr6:123127378 3'AG 123127378 Downstream 30bp 39270 chr6 123127407 123127407 1 + C G BLCA 123127407 + 123127387 123127427 41 TAAATTCTTTGTTTGTGGCTCCTGCTGTTACACCAGTGAAG TAAATTCTTTGTTTGTGGCTGCTGCTGTTACACCAGTGAAG Direct Gain 0 0.913368939818851 NA NA prediction 0.826737879637703 Functional Gain - SMPDL3A ENSG00000172594 CDS Human protein_coding chr6:123127407 chr6:123127407 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42750 0 0 0 0 2 SMPDL3A chr6:123127502 5'GT 123127502 Upstream 96bp 39271 chr17 2224653 2224653 1 + A G COAD 2224653 + 2224633 2224673 41 GAAACAGAAGGCATCATGGTACATCCCAACCAGGAGCCTGC GAAACAGAAGGCATCATGGTGCATCCCAACCAGGAGCCTGC Direct Gain 0 0.913367537430333 NA NA prediction 0.826735074860666 Functional Gain - SRR ENSG00000167720 CDS Human protein_coding chr17:2224653 chr17:2224653 synonymous SNV . 0 21 hm7G_associated_SNPs_42751 0 0 0 0 2 SRR chr17:2224600 3'AG 2224600 Downstream 54bp 39272 chr17 2224653 2224653 1 + A G COAD 2224653 + 2224633 2224673 41 GAAACAGAAGGCATCATGGTACATCCCAACCAGGAGCCTGC GAAACAGAAGGCATCATGGTGCATCCCAACCAGGAGCCTGC Direct Gain 0 0.913367537430333 NA NA prediction 0.826735074860666 Functional Gain - SRR ENSG00000167720 CDS Human protein_coding chr17:2224653 chr17:2224653 synonymous SNV . 0 21 hm7G_associated_SNPs_42751 0 0 0 0 2 SRR chr17:2224719 5'GT 2224719 Upstream 67bp 39273 chr8 17142065 17142065 1 + C G rs2285269 17142065 + 17142045 17142085 41 TCTGATAATATTGCAGAAGACTTCTTGGAGGGAAAGATGGA TCTGATAATATTGCAGAAGAGTTCTTGGAGGGAAAGATGGA Direct Gain 0 0.913359028059382 NA NA prediction 0.826718056118764 Functional Gain - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17142065 chr8:17142065 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_42753 0 0 1 0 2 VPS37A chr8:17141982 3'AG 17141982 Downstream 84bp 39274 chr8 17142065 17142065 1 + C G rs2285269 17142065 + 17142045 17142085 41 TCTGATAATATTGCAGAAGACTTCTTGGAGGGAAAGATGGA TCTGATAATATTGCAGAAGAGTTCTTGGAGGGAAAGATGGA Direct Gain 0 0.913359028059382 NA NA prediction 0.826718056118764 Functional Gain - VPS37A ENSG00000155975 CDS Human protein_coding chr8:17142065 chr8:17142065 nonsynonymous SNV 0.998 1 21 hm7G_associated_SNPs_42753 0 0 1 0 2 VPS37A chr8:17142125 5'GT 17142125 Upstream 61bp 39275 chr19 1428875 1428875 1 + A G KIRP 1428875 + 1428855 1428895 41 AGCTGAGCCTCGGGACAGCAAGAGCCAAGCGCCGGGACAGC AGCTGAGCCTCGGGACAGCAGGAGCCAAGCGCCGGGACAGC Direct Gain 0 0.913343404055533 NA NA prediction 0.826686808111065 Functional Gain - DAZAP1 ENSG00000071626 CDS Human protein_coding chr19:1428875 chr19:1428875 nonsynonymous SNV 0.992 1 21 hm7G_associated_SNPs_42754 0 0 1 0 1 DAZAP1 chr19:1428841 3'AG 1428841 Downstream 35bp 39276 chr20 1209175 1209175 1 + A G COAD 1209175 + 1209155 1209195 41 GCAGCTCACTGGGAGAAGAAACTCACAAAGGCCCATGTATT GCAGCTCACTGGGAGAAGAAGCTCACAAAGGCCCATGTATT Direct Gain 0 0.91334090879762 NA NA prediction 0.826681817595241 Functional Gain - RAD21L1 ENSG00000244588 CDS Human protein_coding chr20:1209175 chr20:1209175 synonymous SNV . 0 21 hm7G_associated_SNPs_42756 0 0 0 0 1 RAD21L1 chr20:1209241 5'GT 1209241 Upstream 67bp 39277 chr5 147793763 147793763 1 + C G LUAD 147793763 + 147793743 147793783 41 GTGGTAGAAAATCCTGGTATCATCACTGATATAGGGATGAA GTGGTAGAAAATCCTGGTATGATCACTGATATAGGGATGAA Direct Gain 0 0.913324421537477 NA NA prediction 0.826648843074954 Functional Gain - FBXO38 ENSG00000145868 CDS Human protein_coding chr5:147793763 chr5:147793763 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42757 0 0 1 0 1 FBXO38 chr5:147793699 3'AG 147793699 Downstream 65bp 39278 chr14 69702849 69702849 1 + A G LUAD 69702849 + 69702829 69702869 41 TAGAAGAAAAGCTCAGTGGTACCTGGACAAAGGCATTGGTG TAGAAGAAAAGCTCAGTGGTGCCTGGACAAAGGCATTGGTG Direct Gain 0 0.913304932260888 NA NA prediction 0.826609864521776 Functional Gain - EXD2 ENSG00000081177 CDS Human protein_coding chr14:69702849 chr14:69702849 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42760 0 0 1 0 2 EXD2 chr14:69702763 3'AG 69702763 Downstream 87bp 39279 chr14 69702849 69702849 1 + A G LUAD 69702849 + 69702829 69702869 41 TAGAAGAAAAGCTCAGTGGTACCTGGACAAAGGCATTGGTG TAGAAGAAAAGCTCAGTGGTGCCTGGACAAAGGCATTGGTG Direct Gain 0 0.913304932260888 NA NA prediction 0.826609864521776 Functional Gain - EXD2 ENSG00000081177 CDS Human protein_coding chr14:69702849 chr14:69702849 nonsynonymous SNV 1.000 5 21 hm7G_associated_SNPs_42760 0 0 1 0 2 EXD2 chr14:69702869 5'GT 69702869 Upstream 21bp 39280 chr19 36239657 36239657 1 + C G CESC 36239657 + 36239637 36239677 41 GAAGGTGAAAGTGGAGAAATCAGGTGAGGACCCTGACGTCG GAAGGTGAAAGTGGAGAAATGAGGTGAGGACCCTGACGTCG Direct Gain 0 0.91329864256971 NA NA prediction 0.82659728513942 Functional Gain - LIN37 ENSG00000267796 CDS Human protein_coding chr19:36239657 chr19:36239657 stopgain 1.000 0 21 hm7G_associated_SNPs_42762 0 0 1 0 1 LIN37 chr19:36239659 5'GT 36239659 Upstream 3bp 39281 chr20 57282250 57282250 1 + C G ESCA 57282250 + 57282230 57282270 41 GGGGCCTTCAGAGCCGCAATCAAGCAGGTGAGTGGGCCCTG GGGGCCTTCAGAGCCGCAATGAAGCAGGTGAGTGGGCCCTG Direct Gain 0 0.913293876282177 NA NA prediction 0.826587752564354 Functional Gain - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57282250 chr20:57282250 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_42763 0 0 1 0 2 NPEPL1 chr20:57282179 3'AG 57282179 Downstream 72bp 39282 chr20 57282250 57282250 1 + C G ESCA 57282250 + 57282230 57282270 41 GGGGCCTTCAGAGCCGCAATCAAGCAGGTGAGTGGGCCCTG GGGGCCTTCAGAGCCGCAATGAAGCAGGTGAGTGGGCCCTG Direct Gain 0 0.913293876282177 NA NA prediction 0.826587752564354 Functional Gain - NPEPL1 ENSG00000215440 CDS Human protein_coding chr20:57282250 chr20:57282250 nonsynonymous SNV 0.996 1 21 hm7G_associated_SNPs_42763 0 0 1 0 2 NPEPL1 chr20:57282256 5'GT 57282256 Upstream 7bp 39283 chr5 176072440 176072440 1 + C G HNSC 176072440 + 176072420 176072460 41 GAGGTATGTGGGGCCGTCGTCAACATCCGCACCAAGGGGGA GAGGTATGTGGGGCCGTCGTGAACATCCGCACCAAGGGGGA Direct Gain 0 0.913280832030137 NA NA prediction 0.826561664060273 Functional Gain - EIF4E1B ENSG00000175766 CDS Human protein_coding chr5:176072440 chr5:176072440 synonymous SNV . 0 21 hm7G_associated_SNPs_42764 0 0 0 0 2 EIF4E1B chr5:176072378 3'AG 176072378 Downstream 63bp 39284 chr5 176072440 176072440 1 + C G HNSC 176072440 + 176072420 176072460 41 GAGGTATGTGGGGCCGTCGTCAACATCCGCACCAAGGGGGA GAGGTATGTGGGGCCGTCGTGAACATCCGCACCAAGGGGGA Direct Gain 0 0.913280832030137 NA NA prediction 0.826561664060273 Functional Gain - EIF4E1B ENSG00000175766 CDS Human protein_coding chr5:176072440 chr5:176072440 synonymous SNV . 0 21 hm7G_associated_SNPs_42764 0 0 0 0 2 EIF4E1B chr5:176072517 5'GT 176072517 Upstream 78bp 39285 chr11 122828085 122828085 1 + A G UCEC 122828085 + 122828065 122828105 41 GAACAGACGCAAAAATTAATACAGCAAAAGGAATATGCAAA GAACAGACGCAAAAATTAATGCAGCAAAAGGAATATGCAAA Direct Gain 0 0.913260749602074 NA NA prediction 0.826521499204149 Functional Gain - C11orf63 ENSG00000109944 CDS Human protein_coding chr11:122828085 chr11:122828085 nonsynonymous SNV 0.040 0 21 hm7G_associated_SNPs_42766 0 0 0 0 1 C11orf63 chr11:122828071 3'AG 122828071 Downstream 15bp 39286 chr9 114688665 114688665 1 + A G COAD 114688665 + 114688645 114688685 41 CCTTTTTTTTAAATTGTAGTAATTCCAGATACGCTTACTGA CCTTTTTTTTAAATTGTAGTGATTCCAGATACGCTTACTGA Direct Gain 0 0.913260483258979 NA NA prediction 0.826520966517958 Functional Gain - UGCG ENSG00000148154 CDS Human protein_coding chr9:114688665 chr9:114688665 synonymous SNV . 0 21 hm7G_associated_SNPs_42767 0 0 1 0 1 UGCG chr9:114688664 3'AG 114688664 Downstream 2bp 39287 chr2 26654847 26654847 1 + C G BLCA 26654847 + 26654827 26654867 41 TGCGAAGAATACAACATGATCAAGATCAAGCTGGAGCAGGA TGCGAAGAATACAACATGATGAAGATCAAGCTGGAGCAGGA Direct Gain 0 0.91325721836123 NA NA prediction 0.82651443672246 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26654847 chr2:26654847 nonsynonymous SNV 0.958 1 21 hm7G_associated_SNPs_42768 0 0 0 1 2 DRC1 chr2:26654752 3'AG 26654752 Downstream 96bp 39288 chr2 26654847 26654847 1 + C G BLCA 26654847 + 26654827 26654867 41 TGCGAAGAATACAACATGATCAAGATCAAGCTGGAGCAGGA TGCGAAGAATACAACATGATGAAGATCAAGCTGGAGCAGGA Direct Gain 0 0.91325721836123 NA NA prediction 0.82651443672246 Functional Gain - DRC1 ENSG00000157856 CDS Human protein_coding chr2:26654847 chr2:26654847 nonsynonymous SNV 0.958 1 21 hm7G_associated_SNPs_42768 0 0 0 1 2 DRC1 chr2:26654874 5'GT 26654874 Upstream 28bp 39289 chr15 79165370 79165370 1 + A G UCEC 79165370 + 79165350 79165390 41 TCACTTATAAATGGCGCCGAAGCAGGACCCGAAGCCTAAAT TCACTTATAAATGGCGCCGAGGCAGGACCCGAAGCCTAAAT Direct Gain 0 0.913243148286596 NA NA prediction 0.826486296573193 Functional Gain - MORF4L1 ENSG00000185787 CDS Human protein_coding chr15:79165370 chr15:79165370 nonsynonymous SNV 1.000 2 21 hm7G_associated_SNPs_42771 0 0 1 0 1 MORF4L1 chr15:79165460 5'GT 79165460 Upstream 91bp 39290 chr22 20094117 20094117 1 + A G KICH 20094117 + 20094097 20094137 41 GTCTGTTTTCTCTTAAAGAAACCATGGGATGGGTGACACGT GTCTGTTTTCTCTTAAAGAAGCCATGGGATGGGTGACACGT Direct Gain 0 0.913235911641657 NA NA prediction 0.826471823283314 Functional Gain - DGCR8 ENSG00000128191 CDS Human protein_coding chr22:20094117 chr22:20094117 nonsynonymous SNV 1.000 3 21 hm7G_associated_SNPs_42773 0 0 1 0 1 DGCR8 chr22:20094115 3'AG 20094115 Downstream 3bp 39291 chr17 61611612 61611612 1 + C G LUAD 61611612 + 61611592 61611632 41 TACTTCAAGGGCTGGTTCCTCATTGACATGGTGGCCGCCAT TACTTCAAGGGCTGGTTCCTGATTGACATGGTGGCCGCCAT Direct Gain 0 0.913216297983698 NA NA prediction 0.826432595967397 Functional Gain - KCNH6 ENSG00000173826 CDS Human protein_coding chr17:61611612 chr17:61611612 synonymous SNV . 0 21 hm7G_associated_SNPs_42775 0 0 0 0 1 KCNH6 chr17:61611672 5'GT 61611672 Upstream 61bp 39292 chr8 67790820 67790820 1 + A G THYM 67790820 + 67790800 67790840 41 TTCTTTCAGGATTTCAGTATATAAGAGTGCATGTGCCTGGT TTCTTTCAGGATTTCAGTATGTAAGAGTGCATGTGCCTGGT Direct Gain 0 0.913205472500434 NA NA prediction 0.826410945000869 Functional Gain - MCMDC2 ENSG00000178460 CDS Human protein_coding chr8:67790820 chr8:67790820 nonsynonymous SNV 0.951 0 21 hm7G_associated_SNPs_42777 0 0 0 0 1 MCMDC2 chr8:67790809 3'AG 67790809 Downstream 12bp 39293 chrX 79277775 79277775 1 + C G LUAD 79277775 + 79277755 79277795 41 CACCCCCTCCAGGGATGGCTCTGAGCTCTCGGGCGCGTGCC CACCCCCTCCAGGGATGGCTGTGAGCTCTCGGGCGCGTGCC Direct Gain 0 0.913201593635181 NA NA prediction 0.826403187270361 Functional Gain - TBX22 ENSG00000122145 CDS Human protein_coding chrX:79277775 chrX:79277775 nonsynonymous SNV 0.999 5 21 hm7G_associated_SNPs_42778 0 0 0 0 1 TBX22 chrX:79277767 3'AG 79277767 Downstream 9bp